Sequence	Length	Modifications	Modified sequence	Carbamidomethyl (C) Probabilities	Oxidation (M) Probabilities	Carbamidomethyl (C) Score Diffs	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Carbamidomethyl (C)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	MS/MS scan numbers	MS3 scan numbers	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Carbamidomethyl (C) site IDs	Oxidation (M) site IDs	Taxonomy IDs	Taxonomy names	Mass deficit
AAAAAATELLL	11	Unmodified	_AAAAAATELLL_					0	0	0			REV__ENST00000401035.7_3_1:78354270-78381781:+|nuORF	REV__ENST00000401035.7_3_1:78354270-78381781:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	507.79541015625	2	507.795132	1013.57571	0.36338	0.00018452	0.22433	0.00011392	0.58771	0.00029844	507.7951597424546	51.171	0.36147	50.992	50.81	51.171	-0.17868					13	6	3	0	0	0	0.52409	1	19674	19674		43.858	7.7313	1	50014000	+		0	15394	0	0	0	0					0.06946609757460465
AAAAGSKVT	9	Unmodified	_AAAAGSKVT_					0	0	0		ENST00000241393.3_1_2:136875674-136875716:-|nuORF	ENST00000241393.3_1_2:136875674-136875716:-|nuORF	ENST00000241393.3_1_2:136875674-136875716:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.21759033203125	2	388.21906	774.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.118	1	24.839	24.339	25.339	-0.27958								0	0	0	0.76877	1	8885	8885		5.2307	0	1				1	6780	1	1	1	1					0.027332538005566676
AAAAMEAMPEP	11	Unmodified	_AAAAMEAMPEP_					0	0	0		ENST00000325192.7_1_14:45366516-45366663:+|nuORF	ENST00000325192.7_1_14:45366516-45366663:+|nuORF	ENST00000325192.7_1_14:45366516-45366663:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	544.74267578125	2	544.741185	1087.46782	0.4779	0.00026033	1.0458	0.00056971	1.5237	0.00083004	544.7416860866977	29.58	1.2474	29.231	28.566	29.813	-0.34921					29	23	2	0	0	0	0.73536	1	10573	10573		8.7454	8.7454	1	3445000			2	7133	2	2	2	2					-0.07241846159786292
AAAASTRGA	9	Unmodified	_AAAASTRGA_					0	0	0		ENST00000440812.7_1_1:183441537-183441705:+|nuORF	ENST00000440812.7_1_1:183441537-183441705:+|nuORF	ENST00000440812.7_1_1:183441537-183441705:+|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2077941894531	2	388.206484	774.398415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.08	1	24.801	24.301	25.301	-0.27958								0	0	0	0.7676	1	8870	8870		9.3474	0	1				3	7922	3	3	3	3					0.002191989979905884
AAAAVVVV	8	Unmodified	_AAAAVVVV_					0	0	0		ENST00000359204.4_1_10:95457906-95462310:-|nuORF	ENST00000359204.4_1_10:95457906-95462310:-|nuORF	ENST00000359204.4_1_10:95457906-95462310:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	699.4413452148438	1	699.439952	698.432676	0.50901	0.00035602	0.67425	0.0004716	1.1833	0.00082762	699.4402694444342	50.038	0.25544	49.875	49.737	49.993	-0.16369					7	4	2	0	0	0	0.59885	1	19193	19193		32.454	0	1	25452000			4	7331	4	4	4	4					0.07139647156907358
AAAAYGMP	8	Unmodified	_AAAAYGMP_					0	0	0			REV__nc|ENSG00000152102|A1KXE4-2|FAM168B	REV__nc|ENSG00000152102|A1KXE4-2|FAM168B	MSMS	HCT116MG_D190212_S3	3	376.1741943359375	2	376.175807	750.337061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.425	1	40.123	39.623	40.623	-0.30161								0	0	0	0.8837	1	15007	15007		6.3541	3.4649	1		+		5	12622	5	5	5	5					-0.04809449025640333
AAAEAAAAAA	10	Unmodified	_AAAEAAAAAA_					0	0	0		ENSG00000183304|ENST00000381003|FAM9A;DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant	ENSG00000183304|ENST00000381003|FAM9A	ENSG00000183304|ENST00000381003|FAM9A	MULTI-MSMS	HCT116MG_D190212_S2	2	787.3955688476562	1	787.394458	786.387182	0.85522	0.00067339	0.17346	0.00013658	1.0287	0.00080998	787.3945810958074	20.375	0.21144	19.995	19.865	20.076	-0.37949					5	3	2	0	0	0	0.042428	1	7125	7125		92.822	3.9185	1	6422100			6	5710	6	6	6	6					-0.014556230961602523
AAAEQDLSVNR	11	Unmodified	_AAAEQDLSVNR_					0	0	0		MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant;MUC17|p.N4205Tfs*18|1|0.07|ENSG00000169876|chr7:101048918-101048918|A/-|frameshift_variant;nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17	MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant	MUC17|p.S3486Qfs*18|1|0.41|ENSG00000169876|chr7:101041869-101041870|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	587.2568359375	2	587.296559	1172.57856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.277	1	21.891	21.391	22.391	-0.3852								0	0	0	0.87053	1	7883	7883		23.79	3.2088	1				7	5096	7	7	7	7					-0.000821668556682198
AAAGPLLK	8	Unmodified	_AAAGPLLK_					0	0	0		PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;nc|ENSG00000130653|Q6ZV29-2|PNPLA7	PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant	PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	370.73541259765625	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.8	1	61.546	61.046	62.046	-0.25457								0	0	0	0.8837	1	23324	23324		0.79363	0	1				8	3091	8	8	8	8					0.07907336048219804
AAAGRARGRAE	11	Unmodified	_AAAGRARGRAE_					0	0	0		ENST00000546481.1_1_12:57881846-57882986:+|nuORF;ENST00000550449.5_1_12:57881846-57883182:+|nuORF;ENST00000551842.5_1_12:57881873-57883359:+|nuORF;ENST00000553162.5_1_12:57881873-57883795:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1;ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENST00000546481.1_1_12:57881846-57882986:+|nuORF	ENST00000546481.1_1_12:57881846-57882986:+|nuORF	MSMS	HCT116MG_D190212_S2	2	362.5368347167969	3	362.535606	1084.58499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.19	1	15.856	15.356	16.356	-0.33451								0	0	0	0.94416	1	5432	5432		4.7159	0	1				9	4897	9	9	9	9					0.04607815886356548
AAALLPLRWRA	11	Unmodified	_AAALLPLRWRA_					0	0	0		ENST00000308027.6_1_17:6939675-6939873:+|nuORF	ENST00000308027.6_1_17:6939675-6939873:+|nuORF	ENST00000308027.6_1_17:6939675-6939873:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	619.8690185546875	2	619.380032	1236.74551	0.32082	0.00019871	0.049265	3.0514E-05	0.37008	0.00022922	619.3799899087263	49.241	0.45549	49.087	48.935	49.39	-0.15405					17	8	3	0	0	0	0.35538	1	18945	18945		8.7454	5.4641	1	165390000			10	7035	10	10	10	10					0.1366077055056394
AAALLPLRWRA	11	Unmodified	_AAALLPLRWRA_					0	0	0		ENST00000308027.6_1_17:6939675-6939873:+|nuORF	ENST00000308027.6_1_17:6939675-6939873:+|nuORF	ENST00000308027.6_1_17:6939675-6939873:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	619.380032	1236.74551	0.52458	0.00032491	-0.12211	-7.5629E-05	0.40247	0.00024928	619.3794117773216	49.214	0.25833	49.214	49.079	49.337	0	0.02623	-4.1825E-05	NaN	8.7454	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36315000			11	7035	10	10							0.1366077055056394
AAALQQQYSQP	11	Unmodified	_AAALQQQYSQP_					0	0	0		ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.Q102Pfs*17|1|0.25|ENSG00000060339|chr10:68740637-68740638|-/C|frameshift_variant;CCAR1|p.Q181Kfs*2|1|0.31|ENSG00000060339|chr10:68747178-68747178|C/-|frameshift_variant;CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant	ENSG00000060339|ENST00000265872|CCAR1	ENSG00000060339|ENST00000265872|CCAR1	MULTI-MSMS	HCT116MG_D190212_S3	3	603.4630126953125	2	602.801477	1203.5884	0.47654	0.00028726	0.33183	0.00020003	0.80837	0.00048729	602.8014292507274	38.553	0.88301	38.251	37.781	38.664	-0.30137					30	16	3	0	0	0	0.72373	2	14185	14185;14240		13.042	2.243	1	9810100			12	1108	11	11	11;12	11					-0.005249788503078889
AAALQQQYSQP	11	Unmodified	_AAALQQQYSQP_					0	0	0		ENSG00000060339|ENST00000265872|CCAR1;CCAR1|p.Q102Pfs*17|1|0.25|ENSG00000060339|chr10:68740637-68740638|-/C|frameshift_variant;CCAR1|p.Q181Kfs*2|1|0.31|ENSG00000060339|chr10:68747178-68747178|C/-|frameshift_variant;CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant;CCAR1|p.E816Kfs*75|1|0.25|ENSG00000060339|chr10:68771347-68771347|A/-|frameshift_variant	ENSG00000060339|ENST00000265872|CCAR1	ENSG00000060339|ENST00000265872|CCAR1	MULTI-MSMS	HCT116MG_D190212_S4	4	603.3038330078125	2	602.801477	1203.5884	1.0665	0.00064289	-0.47611	-0.000287	0.5904	0.00035589	602.8011839165176	38.63	0.72557	38.249	37.813	38.539	-0.38163					30	14	4	0	0	0	0.70991	2	14045	14045;14081		18.146	9.4009	1	9384100			13	1108	11	11	13;14	13					-0.005249788503078889
AAALSEQRLI	10	Unmodified	_AAALSEQRLI_					0	0	0			REV__CYP11B2|p.L496Pfs*8|1|0.14|ENSG00000179142|chr8:142912005-142912006|-/G|frameshift_variant	REV__CYP11B2|p.L496Pfs*8|1|0.14|ENSG00000179142|chr8:142912005-142912006|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	536.3119506835938	2	536.31148	1070.60841	0.44561	0.00023899	0.29316	0.00015722	0.73877	0.00039621	536.3114100608052	52.866	0.72451	52.676	52.293	53.018	-0.18922					31	13	3	0	0	0	0.7974	1	20262	20262		12.241	1.4411	1	26714000	+		14	10318	12	12	15	15					0.07592816880332975
AAALVWIRGP	10	Unmodified	_AAALVWIRGP_					0	0	0		ENSG00000143751|ENST00000272091|SDE2;nc|ENSG00000143751|Q6IQ49-2|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MSMS	HCT116MG_D190212_S1	1	527.3153076171875	2	527.313826	1052.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.943	1	15.943	15.443	16.443	0								0	0	0	0.91507	1	5332	5332		12.532	3.9383	1				15	3830	13	13	16	16					0.08889745813735317
AAAMAPIK	8	Unmodified	_AAAMAPIK_					0	0	0		ENSG00000126432|ENST00000265462|PRDX5;nc|ENSG00000126432|P30044-4|PRDX5;nc|ENSG00000126432|P30044-3|PRDX5	ENSG00000126432|ENST00000265462|PRDX5	ENSG00000126432|ENST00000265462|PRDX5	MULTI-SECPEP	HCT116MG_D190212_S1	1	386.22845458984375	2	386.722924	771.431295	-0.19086	-7.3812E-05	0.20494	7.9256E-05	0.014079	5.4447E-06	386.7228747135955	32.016	0.52163	32.016	31.596	32.118	0					13	9	2	0	0	0	0.21511	1	11763	11763		40.449	2.2974	1	3258500			16	2934	14	14	17	17					0.03643689796479066
AAAMAPIK	8	Unmodified	_AAAMAPIK_					0	0	0		ENSG00000126432|ENST00000265462|PRDX5;nc|ENSG00000126432|P30044-4|PRDX5;nc|ENSG00000126432|P30044-3|PRDX5	ENSG00000126432|ENST00000265462|PRDX5	ENSG00000126432|ENST00000265462|PRDX5	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	386.722924	771.431295	-0.19067	-7.3738E-05	0.070213	2.7153E-05	-0.12046	-4.6585E-05	386.7227400800438	32.186	0.4685	31.908	31.734	32.202	-0.27841	-0.082715	-3.9574E-05	NaN	40.449	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3361700			17	2934	14	14							0.03643689796479066
AAAMAPIK	8	Unmodified	_AAAMAPIK_					0	0	0		ENSG00000126432|ENST00000265462|PRDX5;nc|ENSG00000126432|P30044-4|PRDX5;nc|ENSG00000126432|P30044-3|PRDX5	ENSG00000126432|ENST00000265462|PRDX5	ENSG00000126432|ENST00000265462|PRDX5	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	386.722924	771.431295	-0.0046514	-1.7988E-06	0.081356	3.1462E-05	0.076704	2.9663E-05	386.72282148503615	32.427	0.67478	32.048	31.69	32.364	-0.37924	0.056935	-3.0956E-05	NaN	40.449	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3264800			18	2934	14	14							0.03643689796479066
AAAMESETEP	10	Unmodified	_AAAMESETEP_					0	0	0		ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000562914.1_1_16:56966069-56969248:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF	ENST00000570273.5_1_16:56966069-56976120:+|nuORF	ENST00000570273.5_1_16:56966069-56976120:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2189331054688	2	518.218597	1034.42264	0.25089	0.00013002	0.41703	0.00021611	0.66792	0.00034613	518.2186059649168	44.261	0.21585	44.261	44.141	44.357	0					5	3	2	0	0	0	0.82332	1	16778	16778		10.074	2.1638	1	6991700			19	8888	15	15	18	18					-0.09319373421294586
AAAPGAPRVKR	11	Unmodified	_AAAPGAPRVKR_					0	0	0			REV__ENST00000263511.8_1_1:16802353-16802998:-|nuORF	REV__ENST00000263511.8_1_1:16802353-16802998:-|nuORF	MSMS	HCT116MG_D190212_S4	4	547.3328857421875	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.146	1	37.763	37.263	38.263	-0.38283								0	0	0	0.94284	1	13969	13969		10.074	2.7847	1		+		20	14653	16	16	19	19					0.10899051448268438
AAAPGHRG	8	Unmodified	_AAAPGHRG_					0	0	0			REV__nc|ENSG00000181350|Q8NAA5-2|LRRC75A	REV__nc|ENSG00000181350|Q8NAA5-2|LRRC75A	MSMS	HCT116MG_D190212_S4	4	368.6971740722656	2	368.696087	735.37762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.078	1	30.711	30.211	31.211	-0.36642								0	0	0	0.8837	1	11264	11264		2.5775	0	1		+		21	17232	17	17	20	20					-0.0006534659099770579
AAAPVREAPPP	11	Unmodified	_AAAPVREAPPP_					0	0	0		ENST00000563532.1_1_16:34787289-34787544:+|nuORF	ENST00000563532.1_1_16:34787289-34787544:+|nuORF	ENST00000563532.1_1_16:34787289-34787544:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	359.2010498046875	3	359.201341	1074.58219	-0.66386	-0.00023846	0.37694	0.0001354	-0.28692	-0.00010306	359.20142776220735	15.462	1.4792	15.3	14.926	16.405	-0.16173					47	29	2	0	0	0	0.70991	1	5193	5193		14.218	0	1	1604700			22	8835	18	18	21	21					0.04788547708835722
AAARPRGGKPL	11	Unmodified	_AAARPRGGKPL_					0	0	0		ENST00000288607.2_1_7:1609485-1609569:-|nuORF	ENST00000288607.2_1_7:1609485-1609569:-|nuORF	ENST00000288607.2_1_7:1609485-1609569:-|nuORF	MSMS	HCT116MG_D190212_S3	3	547.332275390625	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.828	1	55.54	55.04	56.04	-0.28773								0	0	0	0.95113	1	21181	21181		5.7319	1.4026	1				23	6955	19	19	22	22					0.10899051448291175
AAASAVFGGGP	11	Unmodified	_AAASAVFGGGP_					0	0	0			REV__nc|ENSG00000115380|Q12805-5|EFEMP1	REV__nc|ENSG00000115380|Q12805-5|EFEMP1	MSMS	HCT116MG_D190212_S1	1	452.7317810058594	2	452.729792	903.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.745	1	16.745	16.245	17.245	0								0	0	0	0.93181	1	5656	5656		15.847	2.3393	1		+		24	11541	20	20	23	23					-0.01055361170699598
AAATAGKEMDS	11	Unmodified	_AAATAGKEMDS_					0	0	0		ENSG00000165821|ENST00000537235|SALL2;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000165821|ENST00000537235|SALL2	ENSG00000165821|ENST00000537235|SALL2	MSMS	HCT116MG_D190212_S2	2	526.240234375	2	526.239864	1050.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.875	1	14.555	14.055	15.055	-0.31952								0	0	0	0.90571	1	4902	4902		19.257	4.4187	1				25	4802	21	21	24	24					-0.05803978293079126
AAATDLEM	8	Unmodified	_AAATDLEM_					0	0	0			REV__PPP1R13L|p.Q440Sfs*10|1|0.42|ENSG00000104881|chr19:45395472-45395472|G/-|frameshift_variant	REV__PPP1R13L|p.Q440Sfs*10|1|0.42|ENSG00000104881|chr19:45395472-45395472|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	821.371826171875	1	821.370946	820.363669	0.74451	0.00061152	0.91136	0.00074856	1.6559	0.0013601	821.3716070681223	53.593	0.25817	53.403	53.274	53.532	-0.1894					6	4	2	0	0	0	0.73076	1	20654	20654		19.439	4.8573	1	7103400	+		26	11227	22	22	25	25					-0.05369804924964683
AAAWRTDNAH	10	Unmodified	_AAAWRTDNAH_					0	0	0			REV__ENSG00000171540|ENST00000306422|OTP	REV__ENSG00000171540|ENST00000306422|OTP	MSMS	HCT116MG_D190212_S1	1	556.7665405273438	2	556.765229	1111.5159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.481	1	23.481	22.981	23.981	0								0	0	0	0.90475	1	8364	8364		14.838	3.198	1		+		27	13351	23	23	26	26					-0.03539268133204132
AADDFRTKF	9	Unmodified	_AADDFRTKF_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	CON__P08727;CON__P19001;ENSG00000128422|ENST00000311208|KRT17	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S3	3	357.5134582519531	3	357.513696	1069.51926	-0.057475	-2.0548E-05	-0.54047	-0.00019322	-0.59794	-0.00021377	357.51355396649484	34.14	0.31248	33.845	33.663	33.975	-0.29419					9	5	2	0	0	0	0.22528	1	12583	12583		38.615	24.709	1	7534600		+	28	559;563;567	24	24	27	27					-0.012720180792030078
AADDFRTKF	9	Unmodified	_AADDFRTKF_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	CON__P08727;CON__P19001;ENSG00000128422|ENST00000311208|KRT17	CON__P08727	MSMS	HCT116MG_D190212_S4	4	535.7670288085938	2	535.766906	1069.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.209	1	33.824	33.324	34.324	-0.38558								0	0	0	0.11571	1	12482	12482		65.474	13.205	1			+	29	559;563;567	24	24	28	28					-0.012720180792030078
AADDFRTKF	9	Unmodified	_AADDFRTKF_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	CON__P08727;CON__P19001;ENSG00000128422|ENST00000311208|KRT17	CON__P08727	MULTI-SECPEP	HCT116MG_D190212_S4	4	357.84808349609375	3	357.513696	1069.51926	-0.011154	-3.9875E-06	-0.31655	-0.00011317	-0.32771	-0.00011716	357.51353276910515	34.227	0.20774	33.841	33.724	33.932	-0.38558					5	3	2	0	0	0	0.16347	1	12510	12510		47.594	27.968	1	4217100		+	30	559;563;567	24	24	29	29					-0.012720180792030078
AADDFRTKF	9	Unmodified	_AADDFRTKF_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	CON__P08727;CON__P19001;ENSG00000128422|ENST00000311208|KRT17	CON__P08727	MULTI-MATCH	HCT116MG_D190212_S2	2		3	357.513696	1069.51926	-0.16027	-5.7298E-05	-0.49353	-0.00017644	-0.6538	-0.00023374	357.5135181809388	33.931	0.25997	33.756	33.604	33.864	-0.17512	-0.058206	-8.5647E-05	NaN	47.594	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13410000		+	31	559;563;567	24	24							-0.012720180792030078
AADDHQAL	8	Unmodified	_AADDHQAL_					0	0	0		nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	MSMS	HCT116MG_D190212_S1	1	420.6962585449219	2	420.695949	839.377345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.698	1	21.698	21.198	22.198	0								0	0	0	0.55695	1	7646	7646		39.95	18.203	1				32	3418	25	25	30	30					-0.048768111015306204
AADDHQAL	8	Unmodified	_AADDHQAL_					0	0	0		nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	MSMS	HCT116MG_D190212_S2	2	420.69610595703125	2	420.695949	839.377345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.125	1	21.74	21.24	22.24	-0.38503								0	0	0	0.022504	1	7822	7822		103.75	59.341	1				33	3418	25	25	31	31					-0.048768111015306204
AADDHQALI	9	Unmodified	_AADDHQALI_					0	0	0		nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	MULTI-MSMS	HCT116MG_D190212_S2	2	477.2376708984375	2	477.237981	952.461409	0.26506	0.00012649	1.9703	0.0009403	2.2354	0.0010668	477.2377887925469	34.221	0.36301	34.046	33.864	34.227	-0.17512					11	6	3	0	0	0	0.035349	1	12730	12730		81.89	27.117	1	29018000			34	3418	26	26	32	32					-0.01672280004629556
AADDHQALI	9	Unmodified	_AADDHQALI_					0	0	0		nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	MULTI-MSMS	HCT116MG_D190212_S3	3	477.23809814453125	2	477.237981	952.461409	0.19167	9.1472E-05	0.70122	0.00033465	0.89289	0.00042612	477.23776167843414	34.345	0.36415	34.051	33.819	34.184	-0.2942					15	6	3	0	0	0	0.01389	1	12644	12644		103.75	50.173	1	14060000			35	3418	26	26	33	33					-0.01672280004629556
AADDHQALI	9	Unmodified	_AADDHQALI_					0	0	0		nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	nc|ENSG00000136485|P61962-2|DCAF7	MULTI-MSMS	HCT116MG_D190212_S4	4	477.2381591796875	2	477.237981	952.461409	0.40629	0.0001939	-0.17711	-8.4522E-05	0.22919	0.00010938	477.2377339479717	34.499	0.30421	34.113	33.984	34.288	-0.38558					8	5	2	0	0	0	0.016701	1	12604	12604		99.799	52.878	1	5598300			36	3418	26	26	34	34					-0.01672280004629556
AADDPEVRV	9	Unmodified	_AADDPEVRV_					0	0	0		nc|ENSG00000169242|P20827-2|EFNA1;ENST00000474413.5_1_1:155102304-155106540:+|nuORF;ENST00000497282.1_1_1:155103761-155106540:+|nuORF;ENSG00000169242|ENST00000368407|EFNA1;ENST00000469878.5_1_1:155106165-155106540:+|nuORF	nc|ENSG00000169242|P20827-2|EFNA1	nc|ENSG00000169242|P20827-2|EFNA1	MSMS	HCT116MG_D190212_S3	3	486.24334716796875	2	486.243264	970.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.792	1	29.556	29.056	30.056	-0.23655								0	0	0	0.37224	1	10835	10835		34.932	8.0484	1				37	5061	27	27	35	35					-0.01444297350190027
AADEPVTV	8	Unmodified	_AADEPVTV_					0	0	0		DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant;ENSG00000173402|ENST00000308775|DAG1	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	801.39892578125	1	801.398875	800.391599	0.89801	0.00071966	-1.0934	-0.00087621	-0.19535	-0.00015655	801.3985914926735	32.614	0.25964	32.234	32.105	32.364	-0.37924					6	4	2	0	0	0	0.36164	1	11923	11923		53.576	23.351	1	2263100			38	638	28	28	36	36					-0.016581586732399956
AADEPVTVL	9	Unmodified	_AADEPVTVL_					0	0	0		DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant;ENSG00000173402|ENST00000308775|DAG1	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	914.4827270507812	1	914.482939	913.475663	0.87397	0.00079923	0.033234	3.0392E-05	0.9072	0.00082962	914.482705565759	44.995	0.46163	44.686	44.532	44.993	-0.30927					11	8	2	0	0	0	0.084109	1	16845	16845		61.357	21.4	1	5811800			39	638	29	29	37	37					0.015463724236610688
AADEPVTVL	9	Unmodified	_AADEPVTVL_					0	0	0		DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant;ENSG00000173402|ENST00000308775|DAG1	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	914.482939	913.475663	0.91508	0.00083683	0.70614	0.00064576	1.6212	0.0014826	914.4830414686421	44.75	0.25939	44.665	44.535	44.794	-0.084797	-0.010201	0.00050948	NaN	61.357	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11380000			40	638	29	29							0.015463724236610688
AADEPVYI	8	Unmodified	_AADEPVYI_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-SECPEP	HCT116MG_D190212_S2	2	877.9654541015625	1	877.430175	876.422899	0.62678	0.00054996	0.74459	0.00065333	1.3714	0.0012033	877.4311860101915	44.122	0.20497	44.044	43.916	44.121	-0.078373					5	3	2	0	0	0	0.14479	1	16764	16764		63.563	20.595	1	13573000			41	3838	30	30	38	38					-0.020255856391486304
AADEPVYI	8	Unmodified	_AADEPVYI_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	HCT116MG_D190212_S3	3	877.4319458007812	1	877.430175	876.422899	1.0163	0.00089177	0.10171	8.9241E-05	1.1181	0.00098101	877.4303432404331	44.404	0.3111	44.097	43.864	44.175	-0.30759					7	5	2	0	0	0	0.23352	1	16609	16609		67.035	30.569	1	7503700			42	3838	30	30	39	39					-0.020255856391486304
AADEPVYI	8	Unmodified	_AADEPVYI_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	HCT116MG_D190212_S4	4	877.431396484375	1	877.430175	876.422899	0.80517	0.00070648	0.71303	0.00062563	1.5182	0.0013321	877.4307919173543	44.503	0.19542	44.129	43.977	44.172	-0.37341					6	3	2	0	0	0	0.19622	1	16392	16392		74.396	37.93	1	3961800			43	3838	30	30	40	40					-0.020255856391486304
AADGKGVVV	9	Unmodified	_AADGKGVVV_					0	0	0		nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	nc|ENSG00000108107|P46779-4|RPL28	nc|ENSG00000108107|P46779-4|RPL28	MULTI-MSMS	HCT116MG_D190212_S2	2	408.2348327636719	2	408.23471	814.454868	-0.07326	-2.9907E-05	0.53501	0.00021841	0.46175	0.0001885	408.23484666310736	26.296	0.30995	25.934	25.766	26.076	-0.36164					8	5	2	0	0	0	0.0201	1	9520	9520		96.367	21.944	1	21621000			44	2149	31	31	41	41					0.040218268346734476
AADGKGVVV	9	Unmodified	_AADGKGVVV_					0	0	0		nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	nc|ENSG00000108107|P46779-4|RPL28	nc|ENSG00000108107|P46779-4|RPL28	MULTI-MSMS	HCT116MG_D190212_S2	2	815.4623413085938	1	815.462144	814.454868	0.97268	0.00079318	-0.23614	-0.00019256	0.73654	0.00060062	815.4618146793646	26.297	0.20624	25.935	25.818	26.024	-0.36164					6	3	2	0	0	0	0.030039	1	9525	9525		86.332	34.063	1	9430800			45	2149	31	31	42	42					0.040218268346734476
AADGKGVVV	9	Unmodified	_AADGKGVVV_					0	0	0		nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	nc|ENSG00000108107|P46779-4|RPL28	nc|ENSG00000108107|P46779-4|RPL28	MULTI-MSMS	HCT116MG_D190212_S3	3	408.23468017578125	2	408.23471	814.454868	0.14992	6.1204E-05	-0.0055616	-2.2705E-06	0.14436	5.8934E-05	408.2346669113233	25.856	0.36506	25.729	25.546	25.911	-0.12795					12	6	3	0	0	0	0.012596	1	9252	9252		106.94	35.807	1	12439000			46	2149	31	31	43	43					0.040218268346734476
AADGKGVVV	9	Unmodified	_AADGKGVVV_					0	0	0		nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	nc|ENSG00000108107|P46779-4|RPL28	nc|ENSG00000108107|P46779-4|RPL28	MULTI-MSMS	HCT116MG_D190212_S4	4	408.2347717285156	2	408.23471	814.454868	0.099057	4.0438E-05	-0.25791	-0.00010529	-0.15886	-6.485E-05	408.2345200128285	26.144	0.31231	25.854	25.672	25.984	-0.29022					8	5	2	0	0	0	0.040027	1	9304	9304		79.596	20.917	1	4551700			47	2149	31	31	44	44					0.040218268346734476
AADGKGVVV	9	Unmodified	_AADGKGVVV_					0	0	0		nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	nc|ENSG00000108107|P46779-4|RPL28	nc|ENSG00000108107|P46779-4|RPL28	MULTI-MATCH	HCT116MG_D190212_S1	1		2	408.23471	814.454868	0.007055	2.8801E-06	0.28234	0.00011526	0.28939	0.00011814	408.234654948974	25.797	0.26146	25.797	25.666	25.927	0	-0.031692	0.00015308	NaN	106.94	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2030000			48	2149	31	31							0.040218268346734476
AADGKVQVL	9	Unmodified	_AADGKVQVL_					0	0	0		ENSG00000197766|ENST00000327726|CFD	ENSG00000197766|ENST00000327726|CFD	ENSG00000197766|ENST00000327726|CFD	MULTI-MSMS	HCT116MG_D190212_S3	3	450.7610778808594	2	450.761092	899.507631	0.2967	0.00013374	-0.56162	-0.00025316	-0.26492	-0.00011942	450.7607506290031	32.767	0.26042	32.482	32.3	32.56	-0.28511					7	4	2	0	0	0	0.012596	1	12015	12015		106.94	21.668	1	4005400			49	6173	32	32	45	45					0.053857848974644185
AADGKVQVL	9	Unmodified	_AADGKVQVL_					0	0	0		ENSG00000197766|ENST00000327726|CFD	ENSG00000197766|ENST00000327726|CFD	ENSG00000197766|ENST00000327726|CFD	MSMS	HCT116MG_D190212_S4	4	450.7609558105469	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.956	1	32.574	32.074	33.074	-0.38223								0	0	0	0.1947	1	12024	12024		47.749	13.347	1				50	6173	32	32	46	46					0.053857848974644185
AADGKVQVL	9	Unmodified	_AADGKVQVL_					0	0	0		ENSG00000197766|ENST00000327726|CFD	ENSG00000197766|ENST00000327726|CFD	ENSG00000197766|ENST00000327726|CFD	MULTI-MATCH	HCT116MG_D190212_S2	2		2	450.761092	899.507631	0.13978	6.3005E-05	0.35974	0.00016216	0.49952	0.00022516	450.7611056848764	32.687	0.26091	32.476	32.325	32.586	-0.21135	-0.0029635	0.00039111	NaN	106.94	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7886100			51	6173	32	32							0.053857848974644185
AADRPGVSL	9	Unmodified	_AADRPGVSL_					0	0	0		ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	443.2612609863281	2	443.243067	884.47158	0.15701	6.9595E-05	-0.10657	-4.7238E-05	0.050439	2.2357E-05	443.24303355969664	32.284	0.31174	32.054	31.787	32.098	-0.23009					7	5	2	0	0	0	0.14607	1	11870	11870		53.404	5.6553	1	10590000			52	170	33	33	47	47					0.024723277206248895
AAEAAAAAA	9	Unmodified	_AAEAAAAAA_					0	0	0		ENSG00000187954|ENST00000530374|ZFTRAF1;ENST00000528558.1_1_8:145677565-145687797:-|nuORF;ENST00000543067.5_1_X:21392559-21392961:+|nuORF;ENSG00000183304|ENST00000381003|FAM9A;DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant	ENSG00000187954|ENST00000530374|ZFTRAF1;ENSG00000183304|ENST00000381003|FAM9A	ENSG00000183304|ENST00000381003|FAM9A	MULTI-MSMS	HCT116MG_D190212_S2	2	716.3583984375	1	716.357345	715.350068	0.78245	0.00056051	0.48523	0.0003476	1.2677	0.00090811	716.3573750317463	18.241	0.31359	17.884	17.754	18.067	-0.35647					8	5	2	0	0	0	0.014796	1	6286	6286		101.72	4.6473	1	9596800			53	5710;5964	34	34	48	48					-0.01899294641918914
AAEAAAAAA	9	Unmodified	_AAEAAAAAA_					0	0	0		ENSG00000187954|ENST00000530374|ZFTRAF1;ENST00000528558.1_1_8:145677565-145687797:-|nuORF;ENST00000543067.5_1_X:21392559-21392961:+|nuORF;ENSG00000183304|ENST00000381003|FAM9A;DACH1|p.P16Lfs*178|1|0.44|ENSG00000276644|chr13:71866723-71866723|G/-|frameshift_variant	ENSG00000187954|ENST00000530374|ZFTRAF1;ENSG00000183304|ENST00000381003|FAM9A	ENSG00000183304|ENST00000381003|FAM9A	MULTI-MSMS	HCT116MG_D190212_S3	3	716.3580322265625	1	716.357345	715.350068	0.36399	0.00026075	0.25571	0.00018318	0.6197	0.00044393	716.3575583410599	17.738	0.31239	17.82	17.69	18.002	0.081358					7	5	2	0	0	0	0.026974	1	5995	5995		89.427	4.0701	1	3435700			54	5710;5964	34	34	49	49					-0.01899294641918914
AAEAAREDHE	10	Unmodified	_AAEAAREDHE_					0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	MULTI-MSMS	HCT116MG_D190212_S3	3	550.217529296875	2	549.744159	1097.47377	0.45148	0.0002482	-0.016719	-9.1912E-06	0.43476	0.00023901	549.7441529750655	15.189	0.93632	15.272	14.674	15.61	0.083271					38	17	3	0	0	0	0.85662	1	4930	4930		7.2892	0.18751	1	6651600			55	5243	35	35	50	50					-0.0710728833223584
AAEAGAPGAPG	11	Unmodified	_AAEAGAPGAPG_					0	0	0			REV__ENSG00000106031|ENST00000649031|HOXA13	REV__ENSG00000106031|ENST00000649031|HOXA13	MULTI-MSMS	HCT116MG_D190212_S2	2	868.4163208007812	1	868.415922	867.408646	0.78773	0.00068408	-0.05635	-4.8935E-05	0.73138	0.00063514	868.4157631245807	17.922	0.46989	17.565	17.284	17.754	-0.35647					19	8	3	0	0	0	0.034687	1	6104	6104		111.29	7.9335	1	16926000	+		56	11283	36	36	51	51					-0.03036238067420527
AAEAGAPGAPG	11	Unmodified	_AAEAGAPGAPG_					0	0	0			REV__ENSG00000106031|ENST00000649031|HOXA13	REV__ENSG00000106031|ENST00000649031|HOXA13	MULTI-MSMS	HCT116MG_D190212_S3	3	868.4170532226562	1	868.415922	867.408646	0.4895	0.00042509	0.1704	0.00014798	0.6599	0.00057307	868.4159422978419	17.459	0.7805	17.541	17.221	18.002	0.081358					31	14	3	0	0	0	0.034754	1	5827	5827		123.45	26.376	1	26946000	+		57	11283	36	36	52	52					-0.03036238067420527
AAEAGAPGAPG	11	Unmodified	_AAEAGAPGAPG_					0	0	0			REV__ENSG00000106031|ENST00000649031|HOXA13	REV__ENSG00000106031|ENST00000649031|HOXA13	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	868.415922	867.408646	0.78773	0.00068408	-0.05635	-4.8935E-05	0.73138	0.00063514	868.4157631245807	17.922	0.46989	17.565	17.284	17.754	-0.35647	0.043895	-0.00017973	NaN	111.29	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16926000	+		58	11283	36	36							-0.03036238067420527
AAEAGAPGAPG	11	Unmodified	_AAEAGAPGAPG_					0	0	0			REV__ENSG00000106031|ENST00000649031|HOXA13	REV__ENSG00000106031|ENST00000649031|HOXA13	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	868.415922	867.408646	0.4895	0.00042509	0.1704	0.00014798	0.6599	0.00057307	868.4159422978419	17.459	0.7805	17.541	17.221	18.002	0.081358	0.019189	1.7181E-05	NaN	111.29	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26946000	+		59	11283	36	36							-0.03036238067420527
AAEAGAPGAPG	11	Unmodified	_AAEAGAPGAPG_					0	0	0			REV__ENSG00000106031|ENST00000649031|HOXA13	REV__ENSG00000106031|ENST00000649031|HOXA13	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	868.415922	867.408646	0.47939	0.00041631	0.27214	0.00023633	0.75153	0.00065264	868.415944575778	17.629	0.83127	17.458	17.121	17.952	-0.17047	-0.063085	0.00010553	NaN	111.29	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17483000	+		60	11283	36	36							-0.03036238067420527
AAEAVAAAA	9	Unmodified	_AAEAVAAAA_					0	0	0		ENST00000327111.7_1_5:92920401-92920743:+|nuORF	ENST00000327111.7_1_5:92920401-92920743:+|nuORF	ENST00000327111.7_1_5:92920401-92920743:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	744.3893432617188	1	744.388645	743.381368	0.38307	0.00028515	0.50747	0.00037776	0.89054	0.00066291	744.3890587462945	22.93	0.25418	22.911	22.797	23.051	-0.018871					6	4	2	0	0	0	0.043314	1	8093	8093		77.984	7.2688	1	3253200			61	7140	37	37	53	53					-0.0005872160782018909
AAEEDEDCDD	10	Unmodified	_AAEEDEDCDD_					0	0	0			REV__nc|ENSG00000186283|Q9H497-2|TOR3A	REV__nc|ENSG00000186283|Q9H497-2|TOR3A	MSMS	HCT116MG_D190212_S2	2	371.10113525390625	3	371.117119	1110.32953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.331	1	11.049	10.549	11.549	-0.28186								0	0	0	0.97045	1	3644	3644		0.15932	0.15932	1		+		62	13881	38	38	54	54					-0.2212234266521591
AAEGFDADM	9	Unmodified	_AAEGFDADM_					0	0	0			REV__DSCAM|p.T1687M|1|0.17|ENSG00000171587|chr21:40052083-40052083|G/A|missense_variant	REV__DSCAM|p.T1687M|1|0.17|ENSG00000171587|chr21:40052083-40052083|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	463.6814880371094	2	463.68165	925.348747	0.15026	6.9673E-05	-0.37307	-0.00017299	-0.22281	-0.00010331	463.6815324458058	36.414	0.35249	36.028	35.773	36.126	-0.38558					11	6	2	0	0	0	0.51829	1	13308	13308		15.847	2.3393	1	1449200	+		63	10415	39	39	55	55					-0.11691296792980665
AAEGFDADM	9	Unmodified	_AAEGFDADM_					0	0	0			REV__DSCAM|p.T1687M|1|0.17|ENSG00000171587|chr21:40052083-40052083|G/A|missense_variant	REV__DSCAM|p.T1687M|1|0.17|ENSG00000171587|chr21:40052083-40052083|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	463.68165	925.348747	0.023778	1.1026E-05	-0.3932	-0.00018232	-0.36942	-0.00017129	463.68140294962944	36.331	0.41597	36.03	35.729	36.145	-0.30042	0.00083594	-1.1922E-05	NaN	15.847	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4026100	+		64	10415	39	39							-0.11691296792980665
AAEKTKDDKFH	11	Unmodified	_AAEKTKDDKFH_					0	0	0			REV__nc|ENSG00000169689|A8MT69-3|CENPX	REV__nc|ENSG00000169689|A8MT69-3|CENPX	MULTI-MSMS	HCT116MG_D190212_S4	4	645.3285522460938	2	645.327859	1288.64116	0.40786	0.0002632	0.38444	0.00024809	0.7923	0.00051129	645.3280867044467	32.18	1.1939	31.805	31.226	32.42	-0.37529					29	22	2	0	0	0	0.72419	1	11643	11643		12.873	0.69786	1	3259700	+		65	16620	40	40	56	56					0.00838979212517188
AAENRAICTYN	11	Unmodified	_AAENRAICTYN_					0	0	0			REV__DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant	REV__DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	612.9552612304688	2	613.285137	1224.55572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.115	1	29.115	28.615	29.615	0								0	0	0	0.94755	1	10629	10629		7.609	0.50723	1		+		66	10413	41	41	57	57					-0.047575092447686984
AAEPDVAGVSA	11	Unmodified	_AAEPDVAGVSA_					0	0	0			REV__ENSG00000251664|ENST00000398631|PCDHA12	REV__ENSG00000251664|ENST00000398631|PCDHA12	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7432556152344	2	493.743096	985.47164	0.18119	8.9464E-05	0.26402	0.00013036	0.44522	0.00021982	493.74311850992586	14.64	0.99031	14.32	14.088	15.079	-0.31952					48	18	4	0	0	0	0.52486	1	5019	5019		43.772	9.3707	1	19380000	+		67	14383	42	42	58	58					-0.021677170700399984
AAEPPPGQLDP	11	Unmodified	_AAEPPPGQLDP_					0	0	0		ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	MSMS	HCT116MG_D190212_S3	3	364.8413391113281	3	364.517106	1090.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.528	1	19.587	19.087	20.087	0.05983								0	0	0	0.93717	1	6701	6701		7.0371	0	1				68	6076	43	43	59	59					-0.012154551446201367
AAEQRKVNWP	10	Unmodified	_AAEQRKVNWP_					0	0	0			REV__ENST00000330692.11_1_11:3384610-3394821:-|nuORF	REV__ENST00000330692.11_1_11:3384610-3394821:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	400.2156982421875	3	400.215761	1197.62546	-0.12239	-4.8983E-05	0.13371	5.3511E-05	0.011314	4.5281E-06	400.2157578560826	26.558	0.25978	26.196	26.076	26.335	-0.36164					11	4	3	0	0	0	0.7199	1	9653	9653		18.721	9.745	1	8956900	+		69	10477	44	44	60	60					0.03454737486140402
AAEQRKVNWP	10	Unmodified	_AAEQRKVNWP_					0	0	0			REV__ENST00000330692.11_1_11:3384610-3394821:-|nuORF	REV__ENST00000330692.11_1_11:3384610-3394821:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	400.215761	1197.62546	0.11202	4.4834E-05	0.19008	7.6072E-05	0.3021	0.00012091	400.21611868800113	26.243	0.26062	26.094	25.994	26.255	-0.14924	-0.0511	4.2024E-05	NaN	18.721	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3476500	+		70	10477	44	44							0.03454737486140402
AAERSTTEM	9	Unmodified	_AAERSTTEM_					0	0	0			REV__LRRC41|p.A25T|1|0.32|ENSG00000132128|chr1:46303250-46303250|C/T|missense_variant	REV__LRRC41|p.A25T|1|0.32|ENSG00000132128|chr1:46303250-46303250|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	498.7591552734375	2	498.226756	994.438959	0.41409	0.00020631	0.5179	0.00025803	0.93199	0.00046434	498.2270745917221	34.85	0.20302	34.464	34.287	34.49	-0.38606					5	3	2	0	0	0	0.2458	1	12710	12710		18.146	1.0335	1	3311700	+		71	16988	45	45	61	61					-0.05848247464552969
AAETAKELTP	10	Unmodified	_AAETAKELTP_					0	0	0		nc|ENSG00000149124|Q6IB77-2|GLYAT;ENSG00000149124|ENST00000344743|GLYAT	nc|ENSG00000149124|Q6IB77-2|GLYAT	nc|ENSG00000149124|Q6IB77-2|GLYAT	MULTI-MSMS	HCT116MG_D190212_S1	1	515.7747802734375	2	515.774396	1029.53424	0.41634	0.00021474	0.21635	0.00011159	0.63268	0.00032632	515.7744098055575	33.631	0.62452	33.631	33.452	34.076	0					14	11	2	0	0	0	0.31047	1	12472	12472		49.554	1.8056	1	5441200			72	4042	46	46	62	62					0.02065428998139396
AAETAKELTP	10	Unmodified	_AAETAKELTP_					0	0	0		nc|ENSG00000149124|Q6IB77-2|GLYAT;ENSG00000149124|ENST00000344743|GLYAT	nc|ENSG00000149124|Q6IB77-2|GLYAT	nc|ENSG00000149124|Q6IB77-2|GLYAT	MULTI-MSMS	HCT116MG_D190212_S3	3	515.774658203125	2	515.774396	1029.53424	0.25262	0.00013029	0.24537	0.00012655	0.49798	0.00025685	515.7744502995536	34.259	0.62428	33.965	33.455	34.079	-0.29419					18	11	2	0	0	0	0.21913	1	12548	12548		57.722	6.0922	1	5566900			73	4042	46	46	63	63					0.02065428998139396
AAETTLTEL	9	Unmodified	_AAETTLTEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000565278.1_1_16:72763309-72763579:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S1	1	948.4884643554688	1	948.488418	947.481142	0.69879	0.00066279	-0.29926	-0.00028385	0.39953	0.00037895	948.4870843247209	44.223	0.26701	44.223	44.036	44.304	0					7	4	2	0	0	0	0.031005	1	16742	16742		85.357	23.999	1	12958000			74	2271	47	47	64	64					0.005300512154803982
AAETWTVKEP	10	Unmodified	_AAETWTVKEP_					0	0	0			REV__ENST00000490714.1_1_21:34975667-35014025:-|nuORF	REV__ENST00000490714.1_1_21:34975667-35014025:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	566.2818603515625	2	566.287671	1130.56079	0.7358	0.00041667	0.25444	0.00014408	0.99023	0.00056076	566.2876685246382	33.238	0.51804	33.045	32.758	33.276	-0.19297					14	9	3	0	0	0	0.77749	1	12259	12259		13.906	5.1606	1	96294000	+		75	14232	48	48	65	65					0.0007311788949664333
AAFDGDGDR	9	Unmodified	_AAFDGDGDR_					0	0	0		PGM1|p.G363Wfs*22|1|0.18|ENSG00000079739|chr1:63638736-63638737|-/T|frameshift_variant;PGM1|p.A512Pfs*33|1|0.23|ENSG00000079739|chr1:63654398-63654398|G/-|frameshift_variant;ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1;nc|ENSG00000079739|P36871-3|PGM1	PGM1|p.G363Wfs*22|1|0.18|ENSG00000079739|chr1:63638736-63638737|-/T|frameshift_variant	PGM1|p.G363Wfs*22|1|0.18|ENSG00000079739|chr1:63638736-63638737|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	462.1959228515625	2	462.196313	922.378074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.118	1	23.86	23.36	24.36	-0.25816								0	0	0	0.76834	1	8481	8481		6.7232	0.36906	1				76	1386	49	49	66	66					-0.08622016452466141
AAFDGGFTV	9	Unmodified	_AAFDGGFTV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	HCT116MG_D190212_S1	1	884.4156494140625	1	884.414859	883.407583	0.55059	0.00048695	-0.14418	-0.00012752	0.40641	0.00035944	884.4143771798597	51.117	0.25874	51.117	50.936	51.194	0					8	4	2	0	0	0	0.065014	1	19532	19532		67.344	27.387	1	14690000			77	1859	50	50	67	67					-0.03878452436322277
AAFDGGFTV	9	Unmodified	_AAFDGGFTV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	HCT116MG_D190212_S2	2	884.415771484375	1	884.414859	883.407583	0.79808	0.00070583	-0.18848	-0.00016669	0.6096	0.00053914	884.414599774537	51.273	0.36041	51.094	50.966	51.326	-0.17868					8	6	2	0	0	0	0.043314	1	19676	19676		77.984	38.027	1	17048000			78	1859	50	50	68	68					-0.03878452436322277
AAFEFDIHQV	10	Unmodified	_AAFEFDIHQV_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF;ENST00000578830.5_1_17:73221901-73228130:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MSMS	HCT116MG_D190212_S1	1	588.3491821289062	2	588.787838	1175.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.2	1	51.2	50.7	51.7	0								0	0	0	0.5023	1	19555	19555		47.594	23.805	1				79	2885	51	51	69	69					-0.019634623906767956
AAFVARGS	8	Unmodified	_AAFVARGS_					0	0	0		ENSG00000092931|ENST00000685175|MFSD11;nc|ENSG00000092931|O43934-2|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	MULTI-MSMS	HCT116MG_D190212_S3	3	389.7137451171875	2	389.713945	777.413337	-0.062173	-2.423E-05	-0.21331	-8.3129E-05	-0.27548	-0.00010736	389.7137546931358	21.802	0.83594	21.804	21.572	22.408	0.0024242					20	15	2	0	0	0	0.76189	1	7627	7627		15.847	1.0089	1	3119700			80	1591	52	52	70	70					0.015726908659985384
AAFVARGS	8	Unmodified	_AAFVARGS_					0	0	0		ENSG00000092931|ENST00000685175|MFSD11;nc|ENSG00000092931|O43934-2|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	389.713945	777.413337	0.2202	8.5815E-05	0.29113	0.00011346	0.51133	0.00019927	389.7138128492363	22.41	0.57074	22.025	21.739	22.31	-0.3852	0.12918	0.00032782	NaN	15.847	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6160400			81	1591	52	52							0.015726908659985384
AAGDRDLRAA	10	Unmodified	_AAGDRDLRAA_					0	0	0		nc|ENSG00000185347|Q86SX3-4|TEDC1;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1	nc|ENSG00000185347|Q86SX3-4|TEDC1	nc|ENSG00000185347|Q86SX3-4|TEDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	508.26727294921875	2	508.267604	1014.52066	0.39013	0.00019829	-0.29851	-0.00015172	0.091625	4.657E-05	508.26719257992727	17.196	0.2605	16.847	16.717	16.978	-0.34933					7	4	2	0	0	0	0.60826	1	5864	5864		27.629	3.839	1	7430100			82	5824	53	53	71	71					0.013976160095467094
AAGGAATP	8	Unmodified	_AAGGAATP_					0	0	0			REV__ENST00000301015.13_2_16:88800318-88802577:-|nuORF	REV__ENST00000301015.13_2_16:88800318-88802577:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	615.3096923828125	1	615.309666	614.30239	0.35364	0.0002176	0.271	0.00016675	0.62464	0.00038435	615.3097591212091	21.612	0.5284	21.63	21.219	21.747	0.018446					11	9	2	0	0	0	0.70465	1	7585	7585		22.453	5.3661	1	2126400	+		83	14786	54	54	72	72					-0.02018948842089685
AAGGNGSRG	9	Unmodified	_AAGGNGSRG_					0	0	0		ENST00000424171.5_2_20:49630363-49639580:-|nuORF;ENST00000439216.5_3_20:49626887-49639580:-|nuORF	ENST00000424171.5_2_20:49630363-49639580:-|nuORF	ENST00000424171.5_2_20:49630363-49639580:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	746.3556518554688	1	746.353991	745.346714	0.87377	0.00065214	0.43245	0.00032276	1.3062	0.0009749	746.3542639097801	31.622	0.72969	31.622	31.336	32.066	0					23	13	3	0	0	0	0.74258	1	11600	11600		2.3027	0.4585	1	55109000			84	7804	55	55	73	73					-0.03614544695903987
AAGGPGPNEPQ	11	Unmodified	_AAGGPGPNEPQ_					0	0	0			REV__nc|ENSG00000160208|Q14684-2|RRP1B	REV__nc|ENSG00000160208|Q14684-2|RRP1B	MSMS	HCT116MG_D190212_S3	3	497.7329406738281	2	497.733063	993.451573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.017	1	16.103	15.603	16.603	0.085424								0	0	0	0.89672	1	5285	5285		20.415	4.2654	1		+		85	12823	56	56	74	74					-0.04541468009995242
AAGLAAATP	9	Unmodified	_AAGLAAATP_					0	0	0		ENST00000522678.5_1_2:219125772-219125886:+|nuORF	ENST00000522678.5_1_2:219125772-219125886:+|nuORF	ENST00000522678.5_1_2:219125772-219125886:+|nuORF	MSMS	HCT116MG_D190212_S3	3	371.70831298828125	2	371.708328	741.402104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.018	1	20.066	19.566	20.566	0.048107								0	0	0	0.3563	1	6899	6899		36.044	3.7387	1				86	8565	57	57	75	75					0.021058687718550573
AAGLAVAGP	9	Unmodified	_AAGLAVAGP_					0	0	0		ENST00000451608.2_1_2:74475609-74479477:-|nuORF	ENST00000451608.2_1_2:74475609-74479477:-|nuORF	ENST00000451608.2_1_2:74475609-74479477:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	726.4141845703125	1	726.414465	725.407189	0.83046	0.00060326	-0.14792	-0.00010745	0.68254	0.00049581	726.4143146185337	20.904	0.88299	20.694	20.136	21.019	-0.20959					21	16	2	0	0	0	0.11088	1	7146	7146		56.048	10.298	1	2106200			87	7985	58	58	76	76					0.03350172634475257
AAGLLAGGP	9	Unmodified	_AAGLLAGGP_					0	0	0		ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	MULTI-MSMS	HCT116MG_D190212_S1	1	363.71087646484375	2	363.710871	725.407189	0.0063588	2.3128E-06	0.11208	4.0766E-05	0.11844	4.3079E-05	363.7107884765506	21.041	0.73931	21.041	20.54	21.279	0					24	13	3	0	0	0	0.24572	1	7305	7305		36.466	0	1	57113000			88	5826	59	59	77	77					0.033501726344866256
AAGLLAGGP	9	Unmodified	_AAGLLAGGP_					0	0	0		ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	MULTI-MSMS	HCT116MG_D190212_S2	2	363.7109680175781	2	363.710871	725.407189	-0.23842	-8.6715E-05	0.36787	0.0001338	0.12945	4.7082E-05	363.7109058591789	21.301	0.67484	20.918	20.39	21.065	-0.38288					19	12	2	0	0	0	0.24572	1	7469	7469		36.466	0	1	7015500			89	5826	59	59	78	78					0.033501726344866256
AAGLLAGGP	9	Unmodified	_AAGLLAGGP_					0	0	0		ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	MULTI-MSMS	HCT116MG_D190212_S3	3	363.7107238769531	2	363.710871	725.407189	-0.20651	-7.5109E-05	0.42146	0.00015329	0.21495	7.8179E-05	363.7109158793949	20.615	1.4578	20.65	19.725	21.183	0.034472					45	27	3	0	0	0	0.24572	1	7057	7057		36.466	0	1	9152200			90	5826	59	59	79	79					0.033501726344866256
AAGLLAGGP	9	Unmodified	_AAGLLAGGP_					0	0	0		ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	MULTI-MSMS	HCT116MG_D190212_S4	4	363.710693359375	2	363.710871	725.407189	0.0084033	3.0564E-06	0.024223	8.81E-06	0.032626	1.1866E-05	363.7107800693239	20.827	1.0388	20.617	20.032	21.071	-0.20959					33	19	2	0	0	0	0.1628	1	7100	7100		45.75	0	1	5455300			91	5826	59	59	80	80					0.033501726344866256
AAGLLAGGP	9	Unmodified	_AAGLLAGGP_					0	0	0		ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	MULTI-MATCH	HCT116MG_D190212_S3	3		2	363.710871	725.407189	-0.16628	-6.0479E-05	0.28807	0.00010477	0.12178	4.4294E-05	363.7108739795967	21.278	0.47468	21.297	21.167	21.641	0.018446	0.21162	1.402E-06	NaN	36.466	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1746000			92	5826	59	59							0.033501726344866256
AAGLPVGAS	9	Unmodified	_AAGLPVGAS_					0	0	0		ENSG00000168875|ENST00000306087|SOX14	ENSG00000168875|ENST00000306087|SOX14	ENSG00000168875|ENST00000306087|SOX14	MSMS	HCT116MG_D190212_S4	4	371.70806884765625	2	371.708328	741.402104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.519	1	20.317	19.817	20.817	-0.20133								0	0	0	0.46961	1	7029	7029		30.225	5.5509	1				93	5035	60	60	81	81					0.02105868771866426
AAGPAGPAGPR	11	Unmodified	_AAGPAGPAGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MSMS	HCT116MG_D190212_S4	4	461.2487487792969	2	461.248683	920.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.215	1	18.04	17.54	18.54	-0.17501								0	0	0	0.89672	1	6098	6098		20.415	5.5763	1				94	4715	61	61	82	82					0.01939149814757002
AAGPQGPK	8	Unmodified	_AAGPQGPK_					0	0	0		ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	MULTI-MSMS	HCT116MG_D190212_S4	4	363.7105407714844	2	363.20067	724.386788	0.0085753	3.1146E-06	-0.14298	-5.1929E-05	-0.1344	-4.8814E-05	363.2004877818084	22.034	0.62334	21.806	21.416	22.039	-0.22777					19	11	2	0	0	0	0.6854	1	7570	7570		24.674	3.8027	1	5216800			95	6038	62	62	83	83					0.013570019746566686
AAGPQGPK	8	Unmodified	_AAGPQGPK_					0	0	0		ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	MSMS	HCT116MG_D190212_S4	4	363.196044921875	2	363.20067	724.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.778	1	20.569	20.069	21.069	-0.20959								0	0	0	0.68119	1	7134	7134		32.117	8.9685	1				96	6038	62	62	84	84					0.013570019746566686
AAGPQGPK	8	Unmodified	_AAGPQGPK_					0	0	0		ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	MSMS	HCT116MG_D190212_S4	4	363.2007751464844	2	363.20067	724.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.878	1	20.668	20.168	21.168	-0.20959								0	0	0	0.68119	1	7174	7174		32.117	8.9685	1				97	6038	62	62	85	85					0.013570019746566686
AAGPTGPI	8	Unmodified	_AAGPTGPI_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF;ENST00000488298.5_1_7:94043536-94045869:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	683.3726806640625	1	683.372266	682.36499	0.60268	0.00041185	-0.032534	-2.2233E-05	0.57014	0.00038962	683.3722888103409	31.855	0.31142	31.479	31.278	31.59	-0.37529					7	5	2	0	0	0	0.13911	1	11600	11600		86.121	15.257	1	2158600			98	4715	63	63	86	86					0.01110197226080345
AAGRPLRE	8	Unmodified	_AAGRPLRE_					0	0	0		ENST00000420411.7_1_X:1520988-1531905:+|nuORF	ENST00000420411.7_1_X:1520988-1531905:+|nuORF	ENST00000420411.7_1_X:1520988-1531905:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	435.2587890625	2	435.251226	868.487899	-0.1091	-4.7488E-05	0.70205	0.00030557	0.59295	0.00025808	435.25141574174006	50.033	0.20583	50.033	49.905	50.111	0					5	3	2	0	0	0	0.85571	1	19078	19078		4.3292	2.0265	1	9559200			99	7779	64	64	87	87					0.048394536773685104
AAGRTRKFEVP	11	Unmodified	_AAGRTRKFEVP_					0	0	0			REV__ENST00000603798.5_1_12:51640581-51664197:-|nuORF	REV__ENST00000603798.5_1_12:51640581-51664197:-|nuORF	MSMS	HCT116MG_D190212_S2	2	616.3463745117188	2	616.348929	1230.6833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.193	1	54.003	53.503	54.503	-0.1894								0	0	0	0.9478	1	20858	20858		9.3831	2.66	1		+		100	16762	65	65	88	88					0.07718999411531513
AAGSLNQRGP	10	Unmodified	_AAGSLNQRGP_					0	0	0			REV__XYLT2|p.G529Afs*78|21|0.31|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant	REV__XYLT2|p.G529Afs*78|21|0.31|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	485.9358215332031	2	485.756872	969.499192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.719	1	14.399	13.899	14.899	-0.31952								0	0	0	0.86471	1	4839	4839		20.454	0.039092	1		+		101	10541	66	66	89	89					0.013222309808611499
AAGTPGPGI	9	Unmodified	_AAGTPGPGI_					0	0	0		nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-MSMS	HCT116MG_D190212_S3	3	740.394287109375	1	740.39373	739.386454	0.59485	0.00044042	0.57712	0.0004273	1.172	0.00086772	740.3940567473567	29.593	0.41712	29.357	29.083	29.5	-0.23655					9	7	2	0	0	0	0.014796	1	10771	10771		101.72	0	1	4676600			102	9428	67	67	90	90					0.0063358225481806585
AAGTVGYK	8	Unmodified	_AAGTVGYK_					0	0	0		tr|U7T5N7|U7T5N7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00029PE=4SV=1	tr|U7T5N7|U7T5N7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00029PE=4SV=1	tr|U7T5N7|U7T5N7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00029PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	383.7081298828125	2	383.708328	765.402104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.16	1	26.032	25.532	26.532	-0.12795								0	0	0	0.87079	1	9373	9373		16.942	3.4344	1				103	18634	68	68	91	91					0.010018687718570618
AAHAGALR	8	Unmodified	_AAHAGALR_					0	0	0			REV__ENST00000491911.5_1_9:140507208-140508236:+|nuORF	REV__ENST00000491911.5_1_9:140507208-140508236:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	766.4327392578125	1	766.431847	765.42457	0.87674	0.00067196	-0.015469	-1.1856E-05	0.86127	0.00066011	766.4318564431145	22.137	0.36353	21.91	21.728	22.091	-0.22777					9	6	2	0	0	0	0.81097	1	7691	7691		10.183	0	1	2283700	+		104	16046	69	69	92	92					0.03247512960126642
AAHFLWVLLA	10	Unmodified	_AAHFLWVLLA_					0	0	0		ENST00000223369.2_1_7:44253332-44253449:+|nuORF	ENST00000223369.2_1_7:44253332-44253449:+|nuORF	ENST00000223369.2_1_7:44253332-44253449:+|nuORF	MSMS	HCT116MG_D190212_S1	1	380.8902893066406	3	380.890327	1139.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.4724	1	4.4724	3.9724	4.9724	0								0	0	0	0.97045	1	1344	1344		0.15932	0	1				105	6760	70	70	93	93					0.08491202990603597
AAHFLWVLLA	10	Unmodified	_AAHFLWVLLA_					0	0	0		ENST00000223369.2_1_7:44253332-44253449:+|nuORF	ENST00000223369.2_1_7:44253332-44253449:+|nuORF	ENST00000223369.2_1_7:44253332-44253449:+|nuORF	MSMS	HCT116MG_D190212_S1	1	380.8907165527344	3	380.890327	1139.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5521	1	5.5521	5.0521	6.0521	0								0	0	0	0.97045	1	1671	1671		0.15932	0	1				106	6760	70	70	94	94					0.08491202990603597
AAHRLHRAP	9	Unmodified	_AAHRLHRAP_					0	0	0			REV__ENST00000407714.1_1_2:241564763-241570253:+|nuORF	REV__ENST00000407714.1_1_2:241564763-241570253:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	515.3189086914062	2	514.796666	1027.57878	0.29189	0.00015026	0.50668	0.00026084	0.79857	0.0004111	514.7969298549032	18.917	0.31281	18.917	18.662	18.975	0					13	5	3	0	0	0	0.49914	1	6515	6515		16.942	16.942	1	5669700	+		107	15426	71	71	95	95					0.06609342445494804
AAHRLHRAP	9	Unmodified	_AAHRLHRAP_					0	0	0			REV__ENST00000407714.1_1_2:241564763-241570253:+|nuORF	REV__ENST00000407714.1_1_2:241564763-241570253:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	514.796666	1027.57878	0.17605	9.0632E-05	0.59274	0.00030514	0.7688	0.00039577	514.7969700393944	18.822	0.3119	18.641	18.459	18.771	-0.18052	-0.13805	5.1372E-05	NaN	16.942	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1827400	+		108	15426	71	71							0.06609342445494804
AAKDGRIR	8	Unmodified	_AAKDGRIR_					0	0	0		PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant;nc|ENSG00000067840|Q76G19-2|PDZD4;nc|ENSG00000067840|Q76G19|PDZD4;ENSG00000067840|ENST00000393758|PDZD4;PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant;PDZD4|p.G344Afs*63|4|0.22|ENSG00000067840|chrX:153804632-153804632|C/-|frameshift_variant;ENST00000548316.1_1_12:41903559-41967689:+|nuORF;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3;nc|ENSG00000165966|Q6ZMN7-4|PDZRN4;nc|ENSG00000165966|Q6ZMN7-2|PDZRN4;PDZRN3|p.K1024Rfs*2|1|0.07|ENSG00000121440|chr3:73383495-73383495|T/-|frameshift_variant;ENSG00000165966|ENST00000402685|PDZRN4;ENSG00000121440|ENST00000263666|PDZRN3;PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant	PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant;PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant	PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	443.2974548339844	2	443.764501	885.514448	0.33219	0.00014741	-1.0284	-0.00045637	-0.69622	-0.00030896	443.76407746396836	41.768	0.26011	41.768	41.602	41.862	0					7	4	2	0	0	0	0.30262	1	15722	15722		19.439	4.8573	1	3904500			109	1192;9740	72	72	96	96					0.06711142568701689
AAKDGRIR	8	Unmodified	_AAKDGRIR_					0	0	0		PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant;nc|ENSG00000067840|Q76G19-2|PDZD4;nc|ENSG00000067840|Q76G19|PDZD4;ENSG00000067840|ENST00000393758|PDZD4;PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant;PDZD4|p.G344Afs*63|4|0.22|ENSG00000067840|chrX:153804632-153804632|C/-|frameshift_variant;ENST00000548316.1_1_12:41903559-41967689:+|nuORF;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3;nc|ENSG00000165966|Q6ZMN7-4|PDZRN4;nc|ENSG00000165966|Q6ZMN7-2|PDZRN4;PDZRN3|p.K1024Rfs*2|1|0.07|ENSG00000121440|chr3:73383495-73383495|T/-|frameshift_variant;ENSG00000165966|ENST00000402685|PDZRN4;ENSG00000121440|ENST00000263666|PDZRN3;PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant	PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant;PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant	PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	443.76446533203125	2	443.764501	885.514448	0.14052	6.236E-05	-0.078395	-3.4789E-05	0.062129	2.7571E-05	443.7643283609788	43.737	1.3401	43.659	42.886	44.227	-0.078373					40	25	2	0	0	0	0.79834	1	16409	16409		11.64	0.81637	1	19949000			110	1192;9740	72	72	97	97					0.06711142568701689
AAKFMRPQ	8	Unmodified	_AAKFMRPQ_					0	0	0			REV__ENST00000375098.7_1_9:100872213-100881366:-|nuORF	REV__ENST00000375098.7_1_9:100872213-100881366:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	474.2565612792969	2	474.75783	947.501106	0.36397	0.0001728	0.66875	0.0003175	1.0327	0.00049029	474.7579536858903	19.05	0.25993	18.863	18.661	18.921	-0.18674					6	4	2	0	0	0	0.32538	1	6416	6416		2.3027	2.3027	1	676070	+		111	15210	73	73	98	98					0.025255684651028787
AAKKAGLL	8	Unmodified	_AAKKAGLL_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	386.2579345703125	2	386.257988	770.501424	0.063114	2.4378E-05	0.13027	5.0319E-05	0.19339	7.4697E-05	386.25791357888545	52.664	0.3107	52.477	52.295	52.606	-0.18725					11	5	3	0	0	0	0.77285	1	20238	20238		14.582	1.0738	1	31514000			112	2872	74	74	99	99					0.1069931145660803
AAKKKKWHLQ	10	Unmodified	_AAKKKKWHLQ_					0	0	0		ENST00000532854.1_10:47241805-47241907:-|nuORF	ENST00000532854.1_10:47241805-47241907:-|nuORF	ENST00000532854.1_10:47241805-47241907:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	619.3800048828125	2	619.380032	1236.74551	0.28271	0.00017511	-0.17223	-0.00010667	0.11048	6.8432E-05	619.3799143887376	49.579	0.26167	49.263	49.079	49.341	-0.31596					6	4	2	0	0	0	0.81435	1	18700	18700		10.824	0.75	1	8973000			113	8641	75	75	100	100					0.136607705505412
AAKKNQMDIA	10	Unmodified	_AAKKNQMDIA_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;ANK3|p.K4020Rfs*45|4|0.35|ENSG00000151150|chr10:60068822-60068822|T/-|frameshift_variant;ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;ANK3|p.K3778Nfs*26|1|0.37|ENSG00000151150|chr10:60069547-60069547|T/-|frameshift_variant;ANK3|p.M3608Cfs*4|1|0.37|ENSG00000151150|chr10:60070059-60070059|T/-|frameshift_variant;ANK3|p.K3331Nfs*6|1|0.32|ENSG00000151150|chr10:60070888-60070888|T/-|frameshift_variant;ANK3|p.I3117Sfs*2|3|0.22|ENSG00000151150|chr10:60071532-60071532|T/-|frameshift_variant;ANK3|p.P2846Tfs*8|1|0.32|ENSG00000151150|chr10:60072346-60072347|-/C|frameshift_variant;ANK3|p.K1120Sfs*35|1|0.28|ENSG00000151150|chr10:60088328-60088328|T/-|frameshift_variant;ANK3|p.I2751Yfs*21|1|0.07|ENSG00000151150|chr10:60072630-60072630|T/-|frameshift_variant;ANK3|p.I2751Nfs*14|2|0.36|ENSG00000151150|chr10:60072629-60072630|-/T|frameshift_variant;ANK3|p.K2612Rfs*25|1|0.43|ENSG00000151150|chr10:60073046-60073046|T/-|frameshift_variant;ANK3|p.L1778Tfs*66|1|0.38|ENSG00000151150|chr10:60075550-60075551|-/G|frameshift_variant;ANK3|p.L1161Pfs*13|1|0.32|ENSG00000151150|chr10:60088205-60088206|-/G|frameshift_variant;ANK3|p.R961Kfs*27|1|0.13|ENSG00000151150|chr10:60114291-60114292|-/T|frameshift_variant;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-7|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MSMS	HCT116MG_D190212_S3	3	545.1327514648438	2	545.289691	1088.56483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.899	1	49.584	49.084	50.084	-0.31525								0	0	0	0.92272	1	18802	18802		10.824	0	1				114	129	76	76	101	101					0.024088841115371906
AAKKRKKDML	10	Unmodified	_AAKKRKKDML_					0	0	0		FBXO32|p.W83Mfs*10|1|0.24|ENSG00000156804|chr8:123533223-123533224|-/T|frameshift_variant;ENST00000520511.1_1_8:124539464-124553254:-|nuORF;ENST00000521719.5_1_8:124526414-124553254:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENSG00000156804|ENST00000517956|FBXO32	FBXO32|p.W83Mfs*10|1|0.24|ENSG00000156804|chr8:123533223-123533224|-/T|frameshift_variant	FBXO32|p.W83Mfs*10|1|0.24|ENSG00000156804|chr8:123533223-123533224|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	594.9057006835938	2	594.8659	1187.71725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.034	1	47.901	47.401	48.401	-0.13281								0	0	0	0.92272	1	18339	18339		10.824	0	1				115	4299	77	77	102	102					0.13089704578942474
AAKKVQHVL	9	Unmodified	_AAKKVQHVL_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MSMS	HCT116MG_D190212_S2	2	497.3275146484375	2	497.313826	992.613099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.554	1	49.39	48.89	49.89	-0.16369								0	0	0	0.61599	1	18969	18969		23.148	8.3102	1		+		116	13119	78	78	103	103					0.1164974581373599
AAKLFNLREG	10	Unmodified	_AAKLFNLREG_					0	0	0		AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant;ENST00000555122.1_1_14:105421221-105423995:-|nuORF;AHNAK2|p.D983Tfs*9|1|0.16|ENSG00000185567|chr14:104952504-104952504|C/-|frameshift_variant;AHNAK2|p.D1643Tfs*9|1|0.12|ENSG00000185567|chr14:104950524-104950524|C/-|frameshift_variant;AHNAK2|p.P2536Lfs*14|1|0.11|ENSG00000185567|chr14:104947844-104947844|G/-|frameshift_variant;AHNAK2|p.L4206Cfs*19|1|0.12|ENSG00000185567|chr14:104942835-104942835|G/-|frameshift_variant;AHNAK2|p.D4448Gfs*6|1|0.2|ENSG00000185567|chr14:104942108-104942109|-/C|frameshift_variant;AHNAK2|p.F346Sfs*42|1|0.12|ENSG00000185567|chr14:104954416-104954416|C/-|frameshift_variant	AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;AHNAK2|p.F346Sfs*42|1|0.12|ENSG00000185567|chr14:104954416-104954416|C/-|frameshift_variant	AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	559.9725952148438	2	559.819473	1117.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.928	1	48.774	48.274	49.274	-0.15405								0	0	0	0.92272	1	18709	18709		10.824	0	1				117	83;84	79	79	104	104					0.07028523117219265
AAKLPKIFHV	10	Unmodified	_AAKLPKIFHV_					0	0	0		nc|ENSG00000124253|P35558-2|PCK1;ENSG00000124253|ENST00000319441|PCK1	nc|ENSG00000124253|P35558-2|PCK1	nc|ENSG00000124253|P35558-2|PCK1	MSMS	HCT116MG_D190212_S3	3	375.2388000488281	3	375.237726	1122.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.66	1	36.358	35.858	36.858	-0.30113								0	0	0	0.96377	1	13553	13553		0.69767	0	1				118	2839	80	80	105	105					0.13491178398976444
AAKLTLLR	8	Unmodified	_AAKLTLLR_					0	0	0			REV__ENST00000496418.5_1_3:132277817-132297733:-|nuORF	REV__ENST00000496418.5_1_3:132277817-132297733:-|nuORF	MSMS	HCT116MG_D190212_S3	3	443.2975769042969	2	443.297645	884.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.671	1	41.368	40.868	41.868	-0.30257								0	0	0	0.85589	1	15501	15501		18.135	4.6271	1		+		119	14350	81	81	106	106					0.13382958410750234
AAKPDGWSDLQ	11	Unmodified	_AAKPDGWSDLQ_					0	0	0			REV__HOXC10|p.S210Qfs*4|1|0.28|ENSG00000180818|chr12:53985881-53985882|-/C|frameshift_variant	REV__HOXC10|p.S210Qfs*4|1|0.28|ENSG00000180818|chr12:53985881-53985882|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	594.2884521484375	2	594.288202	1186.56185	0.52791	0.00031373	-0.005221	-3.1028E-06	0.52268	0.00031063	594.2881440159375	38.507	1.056	38.206	37.66	38.716	-0.30137					48	20	3	0	0	0	0.6946	1	14338	14338		23.801	3.3865	1	43759000	+		120	13672	82	82	107	107					-0.023966677416183302
AAKPQSKLAQ	10	Unmodified	_AAKPQSKLAQ_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;nc|ENSG00000044115|P35221-3|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MSMS	HCT116MG_D190212_S2	2	521.2710571289062	2	521.306198	1040.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.333	1	48.19	47.69	48.69	-0.1437								0	0	0	0.90475	1	18463	18463		14.838	0.93222	1				121	1019	83	83	108	108					0.07916834225875391
AAKPYLLLKT	10	Unmodified	_AAKPYLLLKT_					0	0	0			REV__ENST00000254878.7_1_8:99115104-99118201:-|nuORF	REV__ENST00000254878.7_1_8:99115104-99118201:-|nuORF	MSMS	HCT116MG_D190212_S2	2	559.2777709960938	2	559.352617	1116.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.896	1	48.746	48.246	49.246	-0.15081								0	0	0	0.92272	1	18696	18696		10.824	2.9138	1		+		122	14601	84	84	109	109					0.13700338959301916
AAKQFGVLEK	10	Unmodified	_AAKQFGVLEK_					0	0	0		POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK;POGK|p.N230Tfs*8|1|0.35|ENSG00000143157|chr1:166849262-166849262|A/-|frameshift_variant;POGK|p.N230Kfs*89|1|0.26|ENSG00000143157|chr1:166849261-166849262|-/A|frameshift_variant	POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant	POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	546.0265502929688	2	545.816399	1089.61824	0.55409	0.00030243	0.35116	0.00019167	0.90524	0.0004941	545.8164904125318	50.549	0.67728	50.377	50.191	50.868	-0.1719					25	12	4	0	0	0	0.78781	1	19306	19306		13.042	1.4022	1	243690000			123	3788	85	85	110	110					0.07702004885709357
AAKTPSCKDI	10	Unmodified	_AAKTPSCKDI_					0	0	0		ENST00000608531.1_1_2:91831346-91843483:-|nuORF;ENST00000539543.1_1:148932830-148951295:+|nuORF;ENST00000457390.1_1:148932830-148933440:+|nuORF;ENST00000544283.5_1_2:91823926-91845846:-|nuORF;nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	ENST00000608531.1_1_2:91831346-91843483:-|nuORF	ENST00000608531.1_1_2:91831346-91843483:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	517.7730712890625	2	517.270967	1032.52738	0.34791	0.00017997	0.065801	3.4037E-05	0.41371	0.000214	517.2709383947914	16.436	0.3643	16.436	16.161	16.525	0					14	6	3	0	0	0	0.87059	1	5487	5487		5.7319	0.50118	1	14191000			124	3089	86	86	111	111					0.01241792845917189
AAKVHCYYVT	10	Unmodified	_AAKVHCYYVT_					0	0	0		ENST00000467738.1_1_3:58490953-58512473:-|nuORF;ENSG00000168306|ENST00000302819|ACOX2	ENST00000467738.1_1_3:58490953-58512473:-|nuORF	ENST00000467738.1_1_3:58490953-58512473:-|nuORF	MSMS	HCT116MG_D190212_S2	2	577.7861938476562	2	577.786784	1153.55902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.795	1	48.652	48.152	49.152	-0.1437								0	0	0	0.93854	1	18654	18654		7.2892	0	1				125	4999	87	87	112	112					-0.011622144001648849
AAKVPKMGP	9	Unmodified	_AAKVPKMGP_					0	0	0		PAK4|p.A66Pfs*29|1|0.29|ENSG00000130669|chr19:39169746-39169746|G/-|frameshift_variant	PAK4|p.A66Pfs*29|1|0.29|ENSG00000130669|chr19:39169746-39169746|G/-|frameshift_variant	PAK4|p.A66Pfs*29|1|0.29|ENSG00000130669|chr19:39169746-39169746|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	449.762451171875	2	449.762581	897.510608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.638	1	34.253	33.753	34.753	-0.38558								0	0	0	0.768	1	12656	12656		7.9102	1.5561	1				126	9725	88	88	113	113					0.057753367506279574
AAKVSKKELN	10	Unmodified	_AAKVSKKELN_					0	0	0		ENSG00000119335|ENST00000322030|SET;SET|p.P92Qfs*5|1|0.32|ENSG00000119335|chr9:128691960-128691960|C/-|frameshift_variant	ENSG00000119335|ENST00000322030|SET	ENSG00000119335|ENST00000322030|SET	MSMS	HCT116MG_D190212_S1	1	544.3275756835938	2	544.327131	1086.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.953	1	14.953	14.453	15.453	0								0	0	0	0.90669	1	4933	4933		14.405	0.79051	1				127	2635	89	89	114	114					0.09985389914436382
AALAALALA	9	Unmodified	_AALAALALA_					0	0	0		HTRA3|p.G307Dfs*4|1|0.67|ENSG00000170801|chr4:8292333-8292333|G/-|frameshift_variant;nc|ENSG00000170801|P83110-2|HTRA3;ENSG00000170801|ENST00000307358|HTRA3;ENSG00000267221|ENST00000587304|C17orf113	REV__ENST00000509436.1_1_5:141488539-141511465:+|nuORF	REV__ENST00000509436.1_1_5:141488539-141511465:+|nuORF	MSMS	HCT116MG_D190212_S3	3	392.7483215332031	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.916	1	56.637	56.137	57.137	-0.27913								0	0	0	0.77025	1	21618	21618		0	0	1				128	5156	90	90	115	115					0.08503605219675592
AALAALALA	9	Unmodified	_AALAALALA_					0	0	0		HTRA3|p.G307Dfs*4|1|0.67|ENSG00000170801|chr4:8292333-8292333|G/-|frameshift_variant;nc|ENSG00000170801|P83110-2|HTRA3;ENSG00000170801|ENST00000307358|HTRA3;ENSG00000267221|ENST00000587304|C17orf113	REV__ENST00000509436.1_1_5:141488539-141511465:+|nuORF	REV__ENST00000509436.1_1_5:141488539-141511465:+|nuORF	MSMS	HCT116MG_D190212_S4	4	392.7486267089844	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.102	1	55.796	55.296	56.296	-0.30626								0	0	0	0.77025	1	21023	21023		0	0	1				129	5156	90	90	116	116					0.08503605219675592
AALAGNPK	8	Unmodified	_AALAGNPK_					0	0	0		ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	ENSG00000170430|ENST00000651593|MGMT	MSMS	HCT116MG_D190212_S4	4	371.10107421875	2	371.216321	740.418088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.67	1	21.452	20.952	21.952	-0.21832								0	0	0	0.8837	1	7495	7495		2.3027	0.24298	1				130	5129	91	91	117	117					0.03749575008748707
AALANKHNDPL	11	Unmodified	_AALANKHNDPL_					0	0	0			REV__ENSG00000162972|ENST00000392290|MAIP1	REV__ENSG00000162972|ENST00000392290|MAIP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	388.254150390625	3	388.543767	1162.60947	-0.31201	-0.00012123	0.2867	0.0001114	-0.025306	-9.8326E-06	388.5437262844825	30.132	0.15483	29.848	29.718	29.873	-0.28453					4	2	2	0	0	0	0.36587	1	11051	11051		0.094841	0	1	8096000	+		131	12902	92	92	118	118					0.03467031249238062
AALARGRKS	9	Unmodified	_AALARGRKS_					0	0	0		ENST00000505686.5_1_5:124080234-124080321:-|nuORF	ENST00000505686.5_1_5:124080234-124080321:-|nuORF	ENST00000505686.5_1_5:124080234-124080321:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	464.5321044921875	2	465.2856	928.556647	0.25893	0.00012048	-0.13342	-6.208E-05	0.12551	5.8396E-05	465.2854597138626	49.369	1.9354	49.053	48.552	50.488	-0.31596					78	36	4	0	0	0	0.26608	1	19004	19004		0.6015	0.6015	1	362490000			132	8453	93	93	119	119					0.08951117977085232
AALASVGH	8	Unmodified	_AALASVGH_					0	0	0		ENSG00000205922|ENST00000382349|ONECUT3	ENSG00000205922|ENST00000382349|ONECUT3	ENSG00000205922|ENST00000382349|ONECUT3	MULTI-MSMS	HCT116MG_D190212_S3	3	363.2004089355469	2	363.20067	724.386788	-0.094366	-3.4274E-05	0.27205	9.8808E-05	0.17768	6.4534E-05	363.2006449692837	21.739	0.78597	21.758	21.43	22.216	0.018448					19	14	2	0	0	0	0.76257	1	7565	7565		15.768	0	1	5433600			133	6391	94	94	120	120					0.013570019746680373
AALDNLRKVVP	11	Unmodified	_AALDNLRKVVP_					0	0	0		NEUROD1|p.Y219Lfs*25|1|0.29|ENSG00000162992|chr2:181678206-181678207|-/G|frameshift_variant;ENSG00000162992|ENST00000295108|NEUROD1;ENSG00000171532|ENST00000302584|NEUROD2	NEUROD1|p.Y219Lfs*25|1|0.29|ENSG00000162992|chr2:181678206-181678207|-/G|frameshift_variant	NEUROD1|p.Y219Lfs*25|1|0.29|ENSG00000162992|chr2:181678206-181678207|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	598.3598022460938	2	598.361505	1194.70846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.475	1	58.189	57.689	58.689	-0.28614								0	0	0	0.95686	1	21979	21979		2.7352	1.0826	1				134	4572	95	95	121	121					0.11889054214134376
AALEVLHLIDH	11	Unmodified	_AALEVLHLIDH_					0	0	0			REV__nc|ENSG00000275074|Q6ZVK8-2|NUDT18	REV__nc|ENSG00000275074|Q6ZVK8-2|NUDT18	MSMS	HCT116MG_D190212_S1	1	615.846435546875	2	615.845687	1229.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.865	1	39.865	39.365	40.365	0								0	0	0	0.95113	1	14967	14967		5.7319	0	1		+		135	14455	96	96	122	122					0.07117061460189689
AALGPEGA	8	Unmodified	_AALGPEGA_					0	0	0		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;PTPRN|p.S677Pfs*18|1|0.2|ENSG00000054356|chr2:219297293-219297293|C/-|frameshift_variant;ENST00000462351.5_1_2:220160899-220172331:-|nuORF	nc|ENSG00000054356|Q16849-3|PTPRN	nc|ENSG00000054356|Q16849-3|PTPRN	MULTI-MSMS	HCT116MG_D190212_S4	4	685.3521118164062	1	685.351531	684.344254	0.79152	0.00054247	-0.092176	-6.3173E-05	0.69935	0.0004793	685.3512695597495	25.428	1.1968	25.148	24.902	26.099	-0.27958					29	22	2	0	0	0	0.11846	1	8995	8995		90.836	4.7145	1	9477000			136	1071	97	97	123	123					-0.010543931535835327
AALIHHYVIH	10	Unmodified	_AALIHHYVIH_					0	0	0		nc|ENSG00000204524|Q5CZA5-2|ZNF805;ENSG00000204524|ENST00000414468|ZNF805;ENSG00000083844|ENST00000263095|ZNF264	nc|ENSG00000204524|Q5CZA5-2|ZNF805	nc|ENSG00000204524|Q5CZA5-2|ZNF805	MSMS	HCT116MG_D190212_S3	3	587.146728515625	2	587.330008	1172.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.714	1	50.4	49.9	50.9	-0.31381								0	0	0	0.93576	1	19131	19131		7.9102	1.187	1				137	1437	98	98	124	124					0.06604533216750497
AALKDKKEVEL	11	Unmodified	_AALKDKKEVEL_					0	0	0			REV__nc|ENSG00000151849|Q9HC77-2|CENPJ	REV__nc|ENSG00000151849|Q9HC77-2|CENPJ	MSMS	HCT116MG_D190212_S3	3	622.0298461914062	2	622.366453	1242.71835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.158	1	44.849	44.349	45.349	-0.30927								0	0	0	0.95113	1	16900	16900		5.7319	0.43497	1		+		138	17164	99	99	125	125					0.10670197428862593
AALLGGSP	8	Unmodified	_AALLGGSP_					0	0	0			REV__ENST00000525250.5_1_11:821680-823850:+|nuORF	REV__ENST00000525250.5_1_11:821680-823850:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	685.38818359375	1	685.387916	684.38064	0.66723	0.00045731	-0.048187	-3.3027E-05	0.61904	0.00042428	685.387749581654	30.084	0.676	29.727	29.233	29.909	-0.3571					22	12	2	0	0	0	0.71835	1	10779	10779		20.871	0	1	14329000	+		139	16267	100	100	126	126					0.02582483743128705
AALLPGCRFP	10	Unmodified	_AALLPGCRFP_					0	0	0		ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	MSMS	HCT116MG_D190212_S1	1	522.7879638671875	2	522.786587	1043.55862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.631	1	24.631	24.131	25.131	0								0	0	0	0.92272	1	8826	8826		10.824	2.9138	1				140	7238	101	101	127	127					0.03858410670682133
AALPNVYEV	9	Unmodified	_AALPNVYEV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	HCT116MG_D190212_S1	1	975.5143432617188	1	975.514573	974.507297	0.415	0.00040484	-0.99857	-0.00097412	-0.58357	-0.00056928	975.5129301251604	48.248	0.25742	48.248	48.1	48.357	0					7	4	2	0	0	0	0.057285	1	18396	18396		71.134	22.788	1	17177000			141	1686;8354	102	102	128	128					0.01902365177613774
AALQYIFKLL	10	Unmodified	_AALQYIFKLL_					0	0	0		ENSG00000092020|ENST00000261475|PPP2R3C;nc|ENSG00000092020|Q969Q6-2|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	MSMS	HCT116MG_D190212_S1	1	590.3448486328125	2	590.360442	1178.70633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.558	1	14.558	14.058	15.058	0								0	0	0	0.95179	1	4774	4774		4.3292	0	1				142	1571	103	103	129	129					0.12412625476326866
AALVEAGAAP	10	Unmodified	_AALVEAGAAP_					0	0	0			REV__ENST00000401035.7_3_1:78354270-78381781:+|nuORF	REV__ENST00000401035.7_3_1:78354270-78381781:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	869.47314453125	1	869.472709	868.465432	0.69726	0.00060625	0.084102	7.3125E-05	0.78136	0.00067937	869.472745241429	36.652	0.31224	36.351	36.197	36.509	-0.30113					9	5	2	0	0	0	0.05249	1	13558	13558		85.357	7.3724	1	9434200	+		143	15394	104	104	130	130					0.025938094890875618
AALVSSKGT	9	Unmodified	_AALVSSKGT_					0	0	0			REV__tr|U7SWT6|U7SWT6_FUSNUOrotatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrEPE=3SV=1	REV__tr|U7SWT6|U7SWT6_FUSNUOrotatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrEPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	417.2395935058594	2	417.239993	832.465432	-0.11192	-4.6697E-05	-0.78213	-0.00032634	-0.89405	-0.00037303	417.2395935195874	47.672	0.2966	47.672	47.492	47.789	0					8	5	2	0	0	0	0.72399	1	18138	18138		3.5965	0.31518	1	11212000	+		144	17856	105	105	131	131					0.04249809489101608
AAMAPAIK	8	Unmodified	_AAMAPAIK_					0	0	0			REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	386.7226867675781	2	386.722924	771.431295	-0.19067	-7.3738E-05	0.070213	2.7153E-05	-0.12046	-4.6585E-05	386.7227400800438	32.186	0.4685	31.908	31.734	32.202	-0.27841					13	8	2	0	0	0	0.66848	1	11785	11785		26.341	1.6674	1	3361700	+		145	11637	106	106	132	132					0.03643689796479066
AAMAPAIK	8	Unmodified	_AAMAPAIK_					0	0	0			REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	387.2244873046875	2	386.722924	771.431295	-0.0046514	-1.7988E-06	0.081356	3.1462E-05	0.076704	2.9663E-05	386.72282148503615	32.427	0.67478	32.048	31.69	32.364	-0.37924					17	12	2	0	0	0	0.47906	1	11789	11789		42.968	2.5194	1	3264800	+		146	11637	106	106	133	133					0.03643689796479066
AAMDWCDPGL	10	Unmodified	_AAMDWCDPGL_					0	0	0			REV__DISP1|p.N862Tfs*64|1|0.45|ENSG00000154309|chr1:223003979-223003979|A/-|frameshift_variant	REV__DISP1|p.N862Tfs*64|1|0.45|ENSG00000154309|chr1:223003979-223003979|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	360.1498718261719	3	360.14926	1077.42595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.337	1	14.176	13.676	14.676	-0.16089								0	0	0	0.96291	1	4533	4533		0.77653	0.31819	1		+		147	10368	107	107	134	134					-0.10966401848304486
AAMGAKDR	8	Unmodified	_AAMGAKDR_					0	0	0			REV__ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant	REV__ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	410.2105407714844	2	410.210712	818.406871	-0.11699	-4.7989E-05	-0.761	-0.00031217	-0.87798	-0.00036016	410.2102464411572	18.532	0.15616	18.532	18.454	18.61	0					4	2	2	0	0	0	0.64404	1	6405	6405		28.487	0	1	2467800	+		148	12387	108	108	135	135					-0.009595703570312253
AANDSESN	8	Unmodified	_AANDSESN_					0	0	0			REV__ENSG00000239642|ENST00000442687|MEIKIN	REV__ENSG00000239642|ENST00000442687|MEIKIN	MSMS	HCT116MG_D190212_S2	2	404.1589660644531	2	404.159397	806.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.589	1	12.292	11.792	12.792	-0.29721								0	0	0	0.8837	1	4120	4120		0.79363	0	1		+		149	14344	109	109	136	136					-0.10665984614797708
AANDSESN	8	Unmodified	_AANDSESN_					0	0	0			REV__ENSG00000239642|ENST00000442687|MEIKIN	REV__ENSG00000239642|ENST00000442687|MEIKIN	MSMS	HCT116MG_D190212_S2	2	404.1589660644531	2	404.159397	806.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.168	1	13.856	13.356	14.356	-0.31202								0	0	0	0.8837	1	4626	4626		0.79363	0	1		+		150	14344	109	109	137	137					-0.10665984614797708
AANPHSFVF	9	Unmodified	_AANPHSFVF_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	HCT116MG_D190212_S2	2	495.2463684082031	2	495.245609	988.476666	0.62644	0.00031024	-0.32455	-0.00016073	0.3019	0.00014951	495.2453169668785	46.557	0.41145	46.445	46.317	46.729	-0.11121					11	7	2	0	0	0	0.01405	1	17764	17764		103.35	69.166	1	18348000			151	3105	110	110	138	138					-0.01803368416756257
AAPAALRAARR	11	Unmodified	_AAPAALRAARR_					0	0	0		ENST00000502486.5_2_4:42153705-42154329:-|nuORF	ENST00000502486.5_2_4:42153705-42154329:-|nuORF	ENST00000502486.5_2_4:42153705-42154329:-|nuORF	MSMS	HCT116MG_D190212_S4	4	562.34326171875	2	562.343981	1122.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.287	1	52.953	52.453	53.453	-0.33473								0	0	0	0.95581	1	19891	19891		3.2813	1.2216	1				152	8426	111	111	139	139					0.11697856196815337
AAPAPGPPPRR	11	Unmodified	_AAPAPGPPPRR_					0	0	0			REV__ENSG00000099822|ENST00000251287|HCN2	REV__ENSG00000099822|ENST00000251287|HCN2	MSMS	HCT116MG_D190212_S2	2	543.706787109375	2	543.811982	1085.60941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.075	1	48.921	48.421	49.421	-0.15405								0	0	0	0.93374	1	18770	18770		14.838	4.7643	1		+		153	11047	112	112	140	140					0.07003076039904954
AAPAPGRRARA	11	Unmodified	_AAPAPGRRARA_					0	0	0			REV__ENST00000289431.9_1_20:48525049-48532037:-|nuORF	REV__ENST00000289431.9_1_20:48525049-48532037:-|nuORF	MSMS	HCT116MG_D190212_S2	2	547.2105102539062	2	547.320506	1092.62646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.956	1	48.802	48.302	49.302	-0.15405								0	0	0	0.9414	1	18721	18721		10.824	1.4408	1		+		154	14743	113	113	141	141					0.0838499664569099
AAPAPRRRAP	10	Unmodified	_AAPAPRRRAP_					0	0	0			REV__ENST00000367178.7_2_6:155054552-155054825:+|nuORF	REV__ENST00000367178.7_2_6:155054552-155054825:+|nuORF	MSMS	HCT116MG_D190212_S2	2	531.33447265625	2	531.817599	1061.62064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.158	1	49.004	48.504	49.504	-0.15405								0	0	0	0.85468	1	18805	18805		21.747	0	1		+		155	15115	114	114	142	142					0.09229898134026371
AAPARVRPHLP	11	Unmodified	_AAPARVRPHLP_					0	0	0			REV__KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	REV__KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	592.8538208007812	2	592.854181	1183.69381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.172	1	17.172	16.672	17.672	0								0	0	0	0.94924	1	5828	5828		6.7232	0.99131	1		+		156	16916	115	115	143	143					0.1093102685665599
AAPATPGVPAG	11	Unmodified	_AAPATPGVPAG_					0	0	0		ENSG00000197576|ENST00000360046|HOXA4	ENSG00000197576|ENST00000360046|HOXA4	ENSG00000197576|ENST00000360046|HOXA4	MSMS	HCT116MG_D190212_S4	4	454.7453308105469	2	454.745442	907.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.659	1	31.288	30.788	31.788	-0.37026								0	0	0	0.58282	1	11499	11499		43.858	3.9086	1				157	6156	116	116	144	144					0.018892118633857535
AAPDSRRWLW	10	Unmodified	_AAPDSRRWLW_					0	0	0		nc|ENSG00000197965|O95297-5|MPZL1;ENST00000464954.1_1_1:167691199-167735064:+|nuORF;nc|ENSG00000197965|O95297-3|MPZL1;ENST00000465787.5_1_1:167691238-167742606:+|nuORF;nc|ENSG00000197965|O95297-2|MPZL1;ENSG00000197965|ENST00000359523|MPZL1	nc|ENSG00000197965|O95297-5|MPZL1	nc|ENSG00000197965|O95297-5|MPZL1	MSMS	HCT116MG_D190212_S2	2	629.328369140625	2	629.327996	1256.64144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.235	1	35.093	34.593	35.593	-0.14245								0	0	0	0.95179	1	13136	13136		4.3292	0	1				158	6191	117	117	145	145					0.023384437230333788
AAPDVPPGPA	10	Unmodified	_AAPDVPPGPA_					0	0	0		ENST00000264563.6_1_19:55877420-55879680:-|nuORF	ENST00000264563.6_1_19:55877420-55879680:-|nuORF	ENST00000264563.6_1_19:55877420-55879680:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	445.7450866699219	2	446.232168	890.449782	0.25969	0.00011588	0.071916	3.2091E-05	0.3316	0.00014797	446.23206995113657	29.755	0.58227	29.518	29.344	29.926	-0.23655					14	10	2	0	0	0	0.27023	1	10814	10814		19.257	4.4187	1	2382400			159	6894	118	118	146	146					0.00017522972052574914
AAPDVPPGPA	10	Unmodified	_AAPDVPPGPA_					0	0	0		ENST00000264563.6_1_19:55877420-55879680:-|nuORF	ENST00000264563.6_1_19:55877420-55879680:-|nuORF	ENST00000264563.6_1_19:55877420-55879680:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	446.232168	890.449782	0.25564	0.00011407	-0.35283	-0.00015744	-0.097192	-4.337E-05	446.23180041801294	30.051	0.67611	29.694	29.181	29.857	-0.35711	0.087714	-0.00010375	NaN	19.257	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2175500			160	6894	118	118							0.00017522972052574914
AAPEKRRAARP	11	Unmodified	_AAPEKRRAARP_					0	0	0			REV__ENST00000360614.7_1_19:5719818-5720154:-|nuORF	REV__ENST00000360614.7_1_19:5719818-5720154:-|nuORF	MSMS	HCT116MG_D190212_S2	2	611.9776611328125	2	611.859995	1221.70544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.649	1	49.485	48.985	49.985	-0.16369								0	0	0	0.95113	1	19008	19008		5.7319	0	1		+		161	15083	119	119	147	147					0.10345223879971854
AAPEPGTGVP	10	Unmodified	_AAPEPGTGVP_					0	0	0		ENST00000507735.5_1_4:169799281-169812093:+|nuORF	ENST00000507735.5_1_4:169799281-169812093:+|nuORF	ENST00000507735.5_1_4:169799281-169812093:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	895.4518432617188	1	895.451973	894.444697	0.83998	0.00075217	0.26728	0.00023933	1.1073	0.0009915	895.4515137664205	34.815	0.46779	34.518	34.284	34.752	-0.29707					14	8	2	0	0	0	0.032253	1	12841	12841		100.37	7.8801	1	6696000			162	8473	120	120	148	148					-0.006747808905629427
AAPEPGTGVP	10	Unmodified	_AAPEPGTGVP_					0	0	0		ENST00000507735.5_1_4:169799281-169812093:+|nuORF	ENST00000507735.5_1_4:169799281-169812093:+|nuORF	ENST00000507735.5_1_4:169799281-169812093:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	895.451973	894.444697	0.67167	0.00060145	0.22295	0.00019964	0.89462	0.00080109	895.4518862081829	34.85	0.46137	34.464	34.236	34.698	-0.38606	-0.026933	-9.2287E-06	NaN	100.37	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4580100			163	8473	120	120							-0.006747808905629427
AAPESYSLLR	10	Unmodified	_AAPESYSLLR_					0	0	0			REV__ENST00000505907.1_1_4:6621578-6622043:+|nuORF	REV__ENST00000505907.1_1_4:6621578-6622043:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	369.5326232910156	3	369.532868	1105.57677	-0.12522	-4.6273E-05	-0.43427	-0.00016048	-0.55949	-0.00020675	369.53265594564454	18.245	0.26052	18.321	18.153	18.413	0.076334					6	4	2	0	0	0	0.85662	1	6218	6218		3.8763	1.033	1	2898100	+		164	16143	121	121	149	149					0.028208241263882883
AAPFASLP	8	Unmodified	_AAPFASLP_					0	0	0			REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	MSMS	HCT116MG_D190212_S4	4	387.2125549316406	2	387.213246	772.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.906	1	28.565	28.065	29.065	-0.34059								0	0	0	0.8837	1	10415	10415		11.114	4.7604	1		+		165	14865	122	122	150	150					0.016630567772381255
AAPGPGSP	8	Unmodified	_AAPGPGSP_					0	0	0		nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-MSMS	HCT116MG_D190212_S1	1	653.3255615234375	1	653.325316	652.31804	0.78979	0.00051599	-0.022576	-1.4749E-05	0.76721	0.00050124	653.3251101447453	27.93	0.52037	27.93	27.748	28.268	0					21	9	3	0	0	0	0.81097	1	10136	10136		10.183	0	1	129220000			166	6425	123	123	151	151					-0.022026623250440025
AAPGQTAHP	9	Unmodified	_AAPGQTAHP_					0	0	0			REV__ENSG00000105364|ENST00000253099|MRPL4	REV__ENSG00000105364|ENST00000253099|MRPL4	MSMS	HCT116MG_D190212_S2	2	425.2153015136719	2	425.214309	848.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.162	1	10.88	10.38	11.38	-0.28186								0	0	0	0.76902	1	3582	3582		4.3292	1.44	1		+		167	11249	124	124	152	152					-0.016205144849664066
AAPGRHKA	8	Unmodified	_AAPGRHKA_					0	0	0			REV__ENSG00000165312|ENST00000376495|OTUD1	REV__ENSG00000165312|ENST00000376495|OTUD1	MULTI-MSMS	HCT116MG_D190212_S1	1	807.4576416015625	1	807.458396	806.45112	0.67372	0.000544	0.25479	0.00020573	0.9285	0.00074973	807.4581949111888	50.394	0.25779	50.394	50.214	50.472	0					7	4	2	0	0	0	0.86564	1	19243	19243		2.5775	1.7838	1	8158500	+		168	13047	125	125	153	153					0.04015201851461825
AAPHKPVLSLP	11	Unmodified	_AAPHKPVLSLP_					0	0	0		ENST00000396872.7_2_7:5343698-5343851:+|nuORF	ENST00000396872.7_2_7:5343698-5343851:+|nuORF	ENST00000396872.7_2_7:5343698-5343851:+|nuORF	MSMS	HCT116MG_D190212_S3	3	377.2280578613281	3	377.229119	1128.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.154	1	25.048	24.548	25.548	-0.10618								0	0	0	0.95621	1	8967	8967		3.0723	0.33707	1				169	7657	126	126	154	154					0.10634284156708418
AAPIASVP	8	Unmodified	_AAPIASVP_					0	0	0			REV__CELF3|p.Q389Rfs*38|1|0.16|ENSG00000159409|chr1:151705927-151705927|G/-|frameshift_variant	REV__CELF3|p.Q389Rfs*38|1|0.16|ENSG00000159409|chr1:151705927-151705927|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	363.21246337890625	2	363.213246	724.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.764	1	22.379	21.879	22.879	-0.3852								0	0	0	0.8837	1	8081	8081		11.114	4.7604	1		+		170	10145	127	127	155	155					0.03871056777245485
AAPKKAKKPT	10	Unmodified	_AAPKKAKKPT_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1;REV__ENSG00000168298|ENST00000304218|H1-4	REV__ENSG00000168298|ENST00000304218|H1-4	MSMS	HCT116MG_D190212_S2	2	520.2677001953125	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.579	1	50.407	49.907	50.907	-0.1719								0	0	0	0.88261	1	19386	19386		18.146	1.9972	1		+		171	11793;13194	128	128	156	156					0.13718301502285613
AAPKQQKSR	9	Unmodified	_AAPKQQKSR_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;DIP2A|p.T73M|1|0.47|ENSG00000160305|chr21:46490654-46490654|C/T|missense_variant;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;DIP2A|p.P1075Rfs*15|1|0.35|ENSG00000160305|chr21:46554640-46554640|C/-|frameshift_variant	nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MSMS	HCT116MG_D190212_S2	2	507.2627258300781	2	507.296165	1012.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.122	1	47.989	47.489	48.489	-0.13281								0	0	0	0.71969	1	18375	18375		18.135	8.7519	1				172	4445	129	129	157	157					0.07199083285956931
AAPLGDHVP	9	Unmodified	_AAPLGDHVP_					0	0	0			REV__ENST00000358825.9_1_11:129787049-129788476:-|nuORF	REV__ENST00000358825.9_1_11:129787049-129788476:-|nuORF	MSMS	HCT116MG_D190212_S2	2	438.7322082519531	2	438.732335	875.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.358	1	20.975	20.475	21.475	-0.38288								0	0	0	0.71969	1	7513	7513		18.135	3.2967	1		+		173	15066	130	130	158	158					0.007409426919025464
AAPMTPAARPE	11	Unmodified	_AAPMTPAARPE_					0	0	0		GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;GBE1|p.G429Vfs*7|2|0.09|ENSG00000114480|chr3:81586141-81586141|C/-|frameshift_variant	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	371.1010437011719	3	371.190336	1110.54918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.821	1	26.509	26.009	27.009	-0.3114								0	0	0	0.95925	1	9573	9573		0.50596	0.34663	1				174	2422	131	131	159	159					-0.0016740240550916496
AAPPAAPAAQC	11	Unmodified	_AAPPAAPAAQC_					0	0	0			REV__ENST00000258807.5_1_14:24777867-24780024:-|nuORF	REV__ENST00000258807.5_1_14:24777867-24780024:-|nuORF	MSMS	HCT116MG_D190212_S2	2	484.5281066894531	2	484.236927	966.459301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.605	1	49.442	48.942	49.942	-0.16369								0	0	0	0.9414	1	18990	18990		10.824	0.75	1		+		175	14617	132	132	160	160					-0.025270320140975855
AAPPARPRPR	10	Unmodified	_AAPPARPRPR_					0	0	0			REV__nc|ENSG00000116985|P34820-2|BMP8B	REV__nc|ENSG00000116985|P34820-2|BMP8B	MULTI-MSMS	HCT116MG_D190212_S3	3	544.8245239257812	2	544.825424	1087.63629	0.59917	0.00032644	-1.2364	-0.0006736	-0.63719	-0.00034716	544.824794302021	53.334	0.83642	53.031	52.669	53.505	-0.30304					25	15	2	0	0	0	0.84919	1	20360	20360		7.9102	0	1	4443500	+		176	11603	133	133	161	161					0.09598184651076735
AAPPEKEQLR	10	Unmodified	_AAPPEKEQLR_					0	0	0			REV__nc|ENSG00000015592|Q9H169-3|STMN4	REV__nc|ENSG00000015592|Q9H169-3|STMN4	MSMS	HCT116MG_D190212_S2	2	570.2269897460938	2	569.814387	1137.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.239	1	48.098	47.598	48.598	-0.14079								0	0	0	0.93576	1	18424	18424		7.9102	0	1		+		177	17067	134	134	162	162					0.050919153919721793
AAPPGKPV	8	Unmodified	_AAPPGKPV_					0	0	0		ENST00000263269.3_1_19:48947279-48947732:+|nuORF	ENST00000263269.3_1_19:48947279-48947732:+|nuORF	ENST00000263269.3_1_19:48947279-48947732:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	368.1307678222656	2	368.721239	735.427924	0.0061967	2.2849E-06	0.013609	5.018E-06	0.019806	7.3028E-06	368.7212550663907	27.301	0.20778	26.949	26.818	27.026	-0.35254					5	3	2	0	0	0	0.32196	1	9907	9907		0	0	1	4702600			178	6878	135	135	163	163					0.049627630141344525
AAPPGRGRRRQ	11	Unmodified	_AAPPGRGRRRQ_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MSMS	HCT116MG_D190212_S4	4	407.9066467285156	3	407.906033	1220.69627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.624	1	51.273	50.773	51.773	-0.35028								0	0	0	0.95113	1	19219	19219		2.6312	1.039	1		+		179	16744	136	136	164	164					0.09474875314299425
AAPPHPLSRW	10	Unmodified	_AAPPHPLSRW_					0	0	0		ENST00000342963.2_1_7:5459517-5460286:+|nuORF	ENST00000342963.2_1_7:5459517-5460286:+|nuORF	ENST00000342963.2_1_7:5459517-5460286:+|nuORF	MSMS	HCT116MG_D190212_S1	1	566.7254638671875	2	566.306532	1130.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.974	1	15.974	15.474	16.474	0								0	0	0	0.95507	1	5345	5345		3.5965	0.31518	1				180	7237	137	137	165	165					0.03843673665596725
AAPPPLSP	8	Unmodified	_AAPPPLSP_					0	0	0			REV__ENST00000455843.5_1_22:19705679-19706159:+|nuORF	REV__ENST00000455843.5_1_22:19705679-19706159:+|nuORF	MSMS	HCT116MG_D190212_S1	1	375.2138366699219	2	375.213246	748.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.061	1	23.061	22.561	23.561	0								0	0	0	0.8837	1	8195	8195		5.7604	0	1		+		181	15744	138	138	166	166					0.027670567772474897
AAPPPRRRAP	10	Unmodified	_AAPPPRRRAP_					0	0	0		ENST00000323303.8_1_2:198380622-198380796:+|nuORF	ENST00000323303.8_1_2:198380622-198380796:+|nuORF	ENST00000323303.8_1_2:198380622-198380796:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	545.43212890625	2	544.825424	1087.63629	0.59917	0.00032644	-1.2364	-0.0006736	-0.63719	-0.00034716	544.824794302021	53.334	0.83642	53.031	52.669	53.505	-0.30304					25	15	2	0	0	0	0.30961	1	20324	20324		0.45834	0	1	4443500			182	7116	139	139	167	167					0.09598184651076735
AAPRRLYLRA	10	Unmodified	_AAPRRLYLRA_					0	0	0			REV__ENSG00000014138|ENST00000265465|POLA2	REV__ENSG00000014138|ENST00000265465|POLA2	MSMS	HCT116MG_D190212_S1	1	396.24334716796875	3	396.243763	1185.70946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.368	1	56.368	55.868	56.868	0								0	0	0	0.96263	1	21668	21668		1.9064	1.2087	1		+		183	10538	140	140	168	168					0.12403313373692981
AAPRRRGYGL	10	Unmodified	_AAPRRRGYGL_					0	0	0			REV__ENST00000559228.5_1_15:59063709-59063856:+|nuORF	REV__ENST00000559228.5_1_15:59063709-59063856:+|nuORF	MSMS	HCT116MG_D190212_S2	2	372.882568359375	3	372.884346	1115.63121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.645	1	11.363	10.863	11.863	-0.28186								0	0	0	0.96804	1	3764	3764		0.69767	0.42865	1		+		184	16477	141	141	169	169					0.07801880788474591
AAPRRVRV	8	Unmodified	_AAPRRVRV_					0	0	0			REV__ENST00000320031.12_2_17:48145448-48145508:+|nuORF	REV__ENST00000320031.12_2_17:48145448-48145508:+|nuORF	MSMS	HCT116MG_D190212_S1	1	462.797607421875	2	462.796135	923.577717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.217	1	14.217	13.717	14.717	0								0	0	0	0.8837	1	4640	4640		0.79363	0	1		+		185	14883	142	142	170	170					0.11287128076617137
AAPSPLIH	8	Unmodified	_AAPSPLIH_					0	0	0		HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|246|1|anti-sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|246|1|anti-sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|246|1|anti-sense	MSMS	HCT116MG_D190212_S4	4	403.232177734375	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3157	1	9.106	8.606	9.606	-0.20971								0	0	0	0.8837	1	2847	2847		0.79363	0	1				186	9216	143	143	171	171					0.03934148042867491
AAPVGNSGPGP	11	Unmodified	_AAPVGNSGPGP_					0	0	0			REV__ENST00000343028.8_3_12:27156316-27167204:-|nuORF	REV__ENST00000343028.8_3_12:27156316-27167204:-|nuORF	MSMS	HCT116MG_D190212_S3	3	462.1466369628906	2	462.232699	922.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.409	1	23.37	22.87	23.87	-0.03968								0	0	0	0.9414	1	8264	8264		10.824	0.64053	1		+		187	14990	144	144	172	172					-0.01348262659030297
AAQGLNAP	8	Unmodified	_AAQGLNAP_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-4|WNK1	REV__nc|ENSG00000060237|Q9H4A3-4|WNK1	MSMS	HCT116MG_D190212_S3	3	371.1011047363281	2	371.198128	740.381703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.456	1	19.516	19.016	20.016	0.05983								0	0	0	0.8837	1	6673	6673		6.3541	0	1		+		188	10667	145	145	173	173					0.0011269811204783764
AAQHRAATSQL	11	Unmodified	_AAQHRAATSQL_					0	0	0		nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	MULTI-MSMS	HCT116MG_D190212_S2	2	577.3082275390625	2	577.307261	1152.59997	0.3784	0.00021845	0.38306	0.00022114	0.76145	0.00043959	577.3076061588793	22.046	0.20839	21.661	21.531	21.739	-0.38503					5	3	2	0	0	0	0.72594	1	7815	7815		15.248	6.5031	1	19277000			189	9363	146	146	174	174					0.029772629636909187
AAQLCGRRPD	10	Unmodified	_AAQLCGRRPD_					0	0	0		ENST00000537045.5_1_22:19025468-19025981:-|nuORF	ENST00000537045.5_1_22:19025468-19025981:-|nuORF	ENST00000537045.5_1_22:19025468-19025981:-|nuORF	MSMS	HCT116MG_D190212_S1	1	543.7752075195312	2	543.777282	1085.54001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.521	1	17.521	17.021	18.021	0								0	0	0	0.91279	1	5968	5968		13.042	2.2185	1				190	8671	147	147	175	175					0.0006624902882776951
AAQVEENVHL	10	Unmodified	_AAQVEENVHL_					0	0	0		ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	MULTI-SECPEP	HCT116MG_D190212_S3	3	370.243408203125	3	370.524372	1108.55129	-0.1227	-4.5463E-05	-0.34036	-0.00012611	-0.46306	-0.00017158	370.52416467386536	23.185	0.56082	23.145	22.73	23.291	-0.03968					10	6	3	0	0	0	0.3111	1	8229	8229		1.9064	1.8115	1	12086000			191	4747	148	148	176	176					0.001353496039428137
AAQWMSEYYFR	11	Unmodified	_AAQWMSEYYFR_					0	0	0		ENST00000485161.5_1_3:120424933-120449568:-|nuORF	ENST00000485161.5_1_3:120424933-120449568:-|nuORF	ENST00000485161.5_1_3:120424933-120449568:-|nuORF	MSMS	HCT116MG_D190212_S3	3	484.56939697265625	3	484.551933	1450.63397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.116	1	49.801	49.301	50.301	-0.31525								0	0	0	0.95954	1	18890	18890		1.3296	0.87513	1				192	8284	149	149	177	177					-0.07332076659577069
AAQWQDLK	8	Unmodified	_AAQWQDLK_					0	0	0		RNF216|p.R426Gfs*7|1|0.23|ENSG00000011275|chr7:5725381-5725381|T/-|frameshift_variant;RNF216|p.K414Nfs*19|1|0.24|ENSG00000011275|chr7:5725415-5725415|T/-|frameshift_variant;RNF216|p.S387Lfs*47|1|0.13|ENSG00000011275|chr7:5729492-5729493|-/GG|frameshift_variant;ENSG00000011275|ENST00000389902|RNF216	RNF216|p.R426Gfs*7|1|0.23|ENSG00000011275|chr7:5725381-5725381|T/-|frameshift_variant	RNF216|p.R426Gfs*7|1|0.23|ENSG00000011275|chr7:5725381-5725381|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	480.24957275390625	2	480.250892	958.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.014	1	15.098	14.598	15.598	0.083271								0	0	0	0.8837	1	4880	4880		5.7604	1.0044	1				193	890	150	150	178	178					0.006326142376451571
AARCQVEP	8	Unmodified	_AARCQVEP_					0	0	0		ENST00000367603.7_2_6:143158130-143266337:-|nuORF	ENST00000367603.7_2_6:143158130-143266337:-|nuORF	ENST00000367603.7_2_6:143158130-143266337:-|nuORF	MSMS	HCT116MG_D190212_S2	2	437.2156066894531	2	437.215995	872.417436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.421	1	11.139	10.639	11.639	-0.28186								0	0	0	0.8837	1	3679	3679		2.8892	0	1				194	7395	151	151	179	179					-0.023875877026057424
AARGGHRL	8	Unmodified	_AARGGHRL_					0	0	0		ENST00000333602.10_1_3:195615373-195635404:-|nuORF	ENST00000333602.10_1_3:195615373-195635404:-|nuORF	ENST00000333602.10_1_3:195615373-195635404:-|nuORF	MSMS	HCT116MG_D190212_S1	1	419.2435302734375	2	419.243735	836.472918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.143	1	28.143	27.643	28.643	0								0	0	0	0.8837	1	10241	10241		10.183	0.83596	1				195	7176	152	152	180	180					0.04814006600031462
AARGPVCN	8	Unmodified	_AARGPVCN_					0	0	0		ENST00000261192.11_1_12:25101865-25102168:-|nuORF	ENST00000261192.11_1_12:25101865-25102168:-|nuORF	ENST00000261192.11_1_12:25101865-25102168:-|nuORF	MSMS	HCT116MG_D190212_S4	4	394.1970520019531	2	394.197605	786.380657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.677	1	28.337	27.837	28.837	-0.33981								0	0	0	0.8837	1	10323	10323		5.2307	0	1				196	6846	153	153	181	181					-0.021078395285144325
AARLEENLRSR	11	Unmodified	_AARLEENLRSR_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MSMS	HCT116MG_D190212_S1	1	438.9124450683594	3	438.912742	1313.7164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.855	1	10.855	10.355	11.355	0								0	0	0	0.9619	1	3365	3365		0.094841	0	1				197	3701	154	154	182	182					0.07208581463578412
AARLKPHP	8	Unmodified	_AARLKPHP_					0	0	0			REV__ENST00000547077.1_1_10:102989368-102992212:+|nuORF	REV__ENST00000547077.1_1_10:102989368-102992212:+|nuORF	MSMS	HCT116MG_D190212_S4	4	445.27001953125	2	445.271961	888.52937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.219	1	44.846	44.346	45.346	-0.37266								0	0	0	0.8837	1	16673	16673		2.5775	0	1		+		198	16407	155	155	183	183					0.0806463443669827
AARLSVHNHEY	11	Unmodified	_AARLSVHNHEY_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	MSMS	HCT116MG_D190212_S2	2	432.5986022949219	3	432.886304	1295.63708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.671	1	11.389	10.889	11.889	-0.28186								0	0	0	0.96111	1	3774	3774		0.50596	0.23694	1		+		199	12213	156	156	184	184					0.0010893450946696248
AARLSVHNHEY	11	Unmodified	_AARLSVHNHEY_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	MSMS	HCT116MG_D190212_S2	2	432.88531494140625	3	432.886304	1295.63708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.817	1	11.527	11.027	12.027	-0.28953								0	0	0	0.96111	1	3830	3830		0.50596	0.23694	1		+		200	12213	156	156	185	185					0.0010893450946696248
AARPRPGGP	9	Unmodified	_AARPRPGGP_					0	0	0		ENST00000533069.1_1_11:394244-396720:+|nuORF;ENST00000589123.5_2_19:3462863-3463967:+|nuORF	ENST00000533069.1_1_11:394244-396720:+|nuORF	ENST00000533069.1_1_11:394244-396720:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	439.7512512207031	2	439.751393	877.488233	0.080484	3.5393E-05	-0.014467	-6.3621E-06	0.066017	2.9031E-05	439.75126148218345	15.406	0.20846	15.406	15.275	15.484	0					6	3	2	0	0	0	0.39063	1	5144	5144		23.148	6.2061	1	2303800			201	8643	157	157	186	186					0.04458873397231855
AARPRPGPG	9	Unmodified	_AARPRPGPG_					0	0	0		nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-MSMS	HCT116MG_D190212_S2	2	439.7513732910156	2	439.751393	877.488233	-0.02114	-9.2965E-06	0.23101	0.00010159	0.20987	9.2289E-05	439.75150348855	15.593	0.36464	15.266	15.071	15.436	-0.32684					10	6	2	0	0	0	0.32162	1	5204	5204		28.487	0	1	3453600			202	3362	158	158	187	187					0.04458873397231855
AARRPFRRV	9	Unmodified	_AARRPFRRV_					0	0	0			REV__ENST00000382643.7_1_15:40987429-40990957:+|nuORF	REV__ENST00000382643.7_1_15:40987429-40990957:+|nuORF	MSMS	HCT116MG_D190212_S1	1	564.8486938476562	2	564.84669	1127.67883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.247	1	11.247	10.747	11.747	0								0	0	0	0.77018	1	3523	3523		0	0	1		+		203	15293	159	159	188	188					0.12009579779305568
AARRRRRRHQQ	11	Unmodified	_AARRRRRRHQQ_					0	0	0			REV__ENST00000341744.7_2_20:56227391-56284786:-|nuORF	REV__ENST00000341744.7_2_20:56227391-56284786:-|nuORF	MSMS	HCT116MG_D190212_S2	2	497.62933349609375	3	497.629785	1489.86753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.05	1	48.896	48.396	49.396	-0.15405								0	0	0	0.96121	1	18760	18760		0.45452	0	1		+		204	14975	160	160	189	189					0.14218625405487728
AARSDALAA	9	Unmodified	_AARSDALAA_					0	0	0		ZIC4|p.W175Lfs*43|1|0.13|ENSG00000174963|chr3:147396018-147396019|-/A|frameshift_variant;nc|ENSG00000174963|Q8N9L1-2|ZIC4;ENSG00000174963|ENST00000383075|ZIC4;nc|ENSG00000174963|Q8N9L1-5|ZIC4;nc|ENSG00000174963|Q8N9L1-3|ZIC4;ENST00000493664.5_1_3:147108719-147114575:-|nuORF	ZIC4|p.W175Lfs*43|1|0.13|ENSG00000174963|chr3:147396018-147396019|-/A|frameshift_variant	ZIC4|p.W175Lfs*43|1|0.13|ENSG00000174963|chr3:147396018-147396019|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	423.2275390625	2	423.227417	844.44028	0.071774	3.0377E-05	-0.024758	-1.0478E-05	0.047016	1.9898E-05	423.22737513811546	22.357	0.2607	22.358	22.198	22.459	0.00074577					7	4	2	0	0	0	0.55223	1	7879	7879		13.906	0	1	2919100			205	5355	161	161	190	190					0.011837546864967408
AARSGGKG	8	Unmodified	_AARSGGKG_					0	0	0			REV__ENSG00000177551|ENST00000320238|NHLH2	REV__ENSG00000177551|ENST00000320238|NHLH2	MULTI-SECPEP	HCT116MG_D190212_S2	2	702.6196899414062	1	703.384562	702.377286	0.53502	0.00037633	4.2514	0.0029904	4.7864	0.0033667	703.3872911491934	49.987	0.20495	49.823	49.686	49.891	-0.16369					5	3	2	0	0	0	0.33109	1	19119	19119		2.3027	0	1	19781000	+		206	13577	162	162	191	191					0.01419233689136945
AARTRVWRCGP	11	Unmodified	_AARTRVWRCGP_					0	0	0		ENST00000380305.4_1_6:3259174-3267943:+|nuORF	ENST00000380305.4_1_6:3259174-3267943:+|nuORF	ENST00000380305.4_1_6:3259174-3267943:+|nuORF	MSMS	HCT116MG_D190212_S4	4	424.89666748046875	3	424.896257	1271.66694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.678	1	15.516	15.016	16.016	-0.16173								0	0	0	0.9593	1	5073	5073		1.4551	0	1				207	7563	163	163	192	192					0.04197594973811647
AASAESLPGRR	11	Unmodified	_AASAESLPGRR_					0	0	0		ENST00000389082.9_1_12:31743653-31743836:-|nuORF	ENST00000389082.9_1_12:31743653-31743836:-|nuORF	ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	557.8017578125	2	557.801811	1113.58907	-0.019906	-1.1103E-05	0.32422	0.00018085	0.30432	0.00016975	557.8018914760559	18.762	0.20775	18.399	18.269	18.477	-0.36325					7	3	3	0	0	0	0.67041	1	6480	6480		27.629	3.6082	1	10568000			208	7594	164	164	193	193					0.03681860589426833
AASAESLPGRR	11	Unmodified	_AASAESLPGRR_					0	0	0		ENST00000389082.9_1_12:31743653-31743836:-|nuORF	ENST00000389082.9_1_12:31743653-31743836:-|nuORF	ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	557.801811	1113.58907	-0.019906	-1.1103E-05	0.32422	0.00018085	0.30432	0.00016975	557.8018914760559	18.762	0.20775	18.399	18.269	18.477	-0.36325	0	0	NaN	27.629	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10568000			209	7594	164	164							0.03681860589426833
AASKAPPP	8	Unmodified	_AASKAPPP_					0	0	0			REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF	REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	369.7051696777344	2	369.710871	737.407189	-0.18555	-6.8601E-05	0.3194	0.00011808	0.13384	4.9484E-05	369.7108926164625	25.842	0.25874	25.473	25.291	25.55	-0.36914					7	4	2	0	0	0	0.84415	1	9278	9278		6.3541	3.4649	1	20747000	+		210	15162	165	165	194	194					0.02798172634459206
AASPDIIL	8	Unmodified	_AASPDIIL_					0	0	0		tr|U7T2B1|U7T2B1_FUSNUOsmoprotectanttransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00646PE=3SV=1	tr|U7T2B1|U7T2B1_FUSNUOsmoprotectanttransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00646PE=3SV=1	tr|U7T2B1|U7T2B1_FUSNUOsmoprotectanttransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00646PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	400.2324523925781	2	400.231636	798.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.704	1	11.422	10.922	11.922	-0.28186								0	0	0	0.8837	1	3787	3787		0.79363	0	1				211	18571	166	166	195	195					0.04143308603158857
AASPSVPPGQP	11	Unmodified	_AASPSVPPGQP_					0	0	0			REV__ENST00000355716.4_1_1:2487835-2487958:+|nuORF	REV__ENST00000355716.4_1_1:2487835-2487958:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1007.51513671875	1	1007.51564	1006.50836	0.60495	0.0006095	0.0091929	9.262E-06	0.61414	0.00061876	1007.5156804396894	28.014	0.82209	27.691	27.25	28.072	-0.32326					26	15	2	0	0	0	0.59037	1	10003	10003		36.506	3.7205	1	4505200	+		212	15039	167	167	196	196					0.005365795465195333
AASPVRRHVVM	11	Unmodified	_AASPVRRHVVM_					0	0	0			REV__ENST00000507907.1_1_6:146747775-146755929:+|nuORF	REV__ENST00000507907.1_1_6:146747775-146755929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	408.5670166015625	3	408.232758	1221.67644	0.14741	6.0178E-05	-0.8463	-0.00034549	-0.69889	-0.00028531	408.2326658049201	20.726	0.25982	20.518	20.346	20.605	-0.20806					10	4	3	0	0	0	0.74191	1	7131	7131		6.2344	0	1	3752600	+		213	12637	168	168	197	197					0.07447363259325357
AASQPQAVPP	10	Unmodified	_AASQPQAVPP_					0	0	0		ENST00000535739.5_1_12:6493425-6494510:+|nuORF;LTBR|p.S182Afs*33|1|0.33|ENSG00000111321|chr12:6386132-6386132|C/-|frameshift_variant;ENSG00000111321|ENST00000228918|LTBR	ENST00000535739.5_1_12:6493425-6494510:+|nuORF	ENST00000535739.5_1_12:6493425-6494510:+|nuORF	MSMS	HCT116MG_D190212_S4	4	483.256103515625	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.482	1	22.255	21.755	22.755	-0.22777								0	0	0	0.86471	1	7823	7823		20.454	1.1966	1				214	2287	169	169	198	198					0.014125968920893683
AASTKAMQML	10	Unmodified	_AASTKAMQML_					0	0	0			REV__tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1	REV__tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	526.26953125	2	526.26737	1050.52019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.81	1	22.81	22.31	23.31	0								0	0	0	0.88261	1	8094	8094		18.146	1.2041	1		+		215	17884	170	170	199	199					-0.0030526302614362066
AATADREAFY	10	Unmodified	_AATADREAFY_					0	0	0			REV__nc|ENSG00000110675|Q8N336-2|ELMOD1	REV__nc|ENSG00000110675|Q8N336-2|ELMOD1	MULTI-MSMS	HCT116MG_D190212_S2	2	372.1764221191406	3	372.176972	1113.50909	-0.11134	-4.1439E-05	-0.33001	-0.00012282	-0.44135	-0.00016426	372.1766282070471	25.217	0.2602	24.842	24.66	24.92	-0.37521					6	4	2	0	0	0	0.86868	1	9079	9079		6.1918	0.89496	1	11678000	+		216	11405	171	171	200	200					-0.043126258044367205
AATAPQAPSPG	11	Unmodified	_AATAPQAPSPG_					0	0	0			REV__ENSG00000183072|ENST00000329198|NKX2-5	REV__ENSG00000183072|ENST00000329198|NKX2-5	MULTI-MSMS	HCT116MG_D190212_S4	4	484.2461242675781	2	484.245806	966.47706	0.2411	0.00011675	-0.1649	-7.9853E-05	0.076195	3.6897E-05	484.24577668493254	24.74	0.98625	24.471	23.823	24.809	-0.26881					35	18	3	0	0	0	0.39766	1	8713	8713		55.235	3.6048	1	16006000	+		217	13741	172	172	201	201					-0.0075199348757450934
AATAPQAPSPG	11	Unmodified	_AATAPQAPSPG_					0	0	0			REV__ENSG00000183072|ENST00000329198|NKX2-5	REV__ENSG00000183072|ENST00000329198|NKX2-5	MULTI-MSMS	HCT116MG_D190212_S4	4	967.4862060546875	1	967.484336	966.47706	0.74272	0.00071857	0.034943	3.3807E-05	0.77766	0.00075238	967.4842657229668	24.755	0.36337	24.486	24.289	24.653	-0.26881					14	6	3	0	0	0	0.48205	1	8723	8723		47.732	3.8737	1	6130300	+		218	13741	172	172	202	202					-0.0075199348757450934
AATCIWDHGP	10	Unmodified	_AATCIWDHGP_					0	0	0		ENSG00000137558|ENST00000260113|PI15	ENSG00000137558|ENST00000260113|PI15	ENSG00000137558|ENST00000260113|PI15	MULTI-SECPEP	HCT116MG_D190212_S1	1	535.3339233398438	2	535.739834	1069.46511	0.38137	0.00020431	0.0094544	5.0651E-06	0.39082	0.00020938	535.7399116212638	16.082	0.15639	16.082	16.004	16.161	0					4	2	2	0	0	0	0.3029	1	5414	5414		3.5965	0	1	1599900			219	3487	173	173	203	203					-0.06683933502426953
AATGGNFR	8	Unmodified	_AATGGNFR_					0	0	0			REV__ENST00000566567.1_1_9:138999849-139000686:-|nuORF	REV__ENST00000566567.1_1_9:138999849-139000686:-|nuORF	MSMS	HCT116MG_D190212_S4	4	397.2010498046875	2	397.201202	792.387851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.557	1	18.377	17.877	18.877	-0.18052								0	0	0	0.8396	1	6237	6237		19.439	3.6708	1		+		220	16547	174	174	204	204					-0.01664783656428881
AATHARLPP	9	Unmodified	_AATHARLPP_					0	0	0			REV__ENST00000356432.7_1_16:129505-133057:+|nuORF	REV__ENST00000356432.7_1_16:129505-133057:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	467.2963562011719	2	467.266876	932.519199	0.22196	0.00010372	-0.059266	-2.7693E-05	0.1627	7.6024E-05	467.2667821596562	17.441	0.26132	17.091	16.978	17.239	-0.34933					8	4	3	0	0	0	0.55919	1	5898	5898		13.508	0.97634	1	18293000	+		221	15047	175	175	205	205					0.050240267114645576
AATHSEQAQ	9	Unmodified	_AATHSEQAQ_					0	0	0		ENSG00000152284|ENST00000282111|TCF7L1	ENSG00000152284|ENST00000282111|TCF7L1	ENSG00000152284|ENST00000282111|TCF7L1	MULTI-SECPEP	HCT116MG_D190212_S3	3	472.2276306152344	2	471.717413	941.420273	0.099199	4.6794E-05	0.19755	9.3187E-05	0.29675	0.00013998	471.7175198799827	16.594	0.6241	16.679	16.289	16.913	0.085424					19	11	2	0	0	0	0.16757	1	5520	5520		17.113	0	1	4617100			222	4146	176	176	206	206					-0.05278041044095971
AATHSEQAQ	9	Unmodified	_AATHSEQAQ_					0	0	0		ENSG00000152284|ENST00000282111|TCF7L1	ENSG00000152284|ENST00000282111|TCF7L1	ENSG00000152284|ENST00000282111|TCF7L1	MULTI-MSMS	HCT116MG_D190212_S4	4	471.7177734375	2	471.717413	941.420273	-0.29362	-0.00013851	0.93348	0.00044034	0.63986	0.00030183	471.7179164143161	16.748	0.56416	16.582	16.303	16.867	-0.16664					17	10	2	0	0	0	0.35128	1	5511	5511		25.399	2.2509	1	1718600			223	4146	176	176	207	207					-0.05278041044095971
AATKARVR	8	Unmodified	_AATKARVR_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-MSMS	HCT116MG_D190212_S2	2	436.7745056152344	2	436.774868	871.535184	-0.057004	-2.4898E-05	0.16555	7.2306E-05	0.10854	4.7408E-05	436.77484690197537	49.182	1.8451	49.028	48.783	50.628	-0.15405					78	35	5	0	0	0	0.81821	1	19283	19283		9.3474	4.1168	1	2630500000			224	4474	177	177	208	208					0.09427732948370249
AATLDEADSRA	11	Unmodified	_AATLDEADSRA_					0	0	0			REV__ENST00000507573.1_1_3:128890453-128902685:-|nuORF	REV__ENST00000507573.1_1_3:128890453-128902685:-|nuORF	MSMS	HCT116MG_D190212_S1	1	560.2687377929688	2	560.267467	1118.52038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.942	1	23.942	23.442	24.442	0								0	0	0	0.9387	1	8549	8549		12.241	2.1667	1		+		225	16117	178	178	209	209					-0.03413848500963468
AATLVEYYLP	10	Unmodified	_AATLVEYYLP_					0	0	0			REV__SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	REV__SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	570.6077880859375	2	570.30279	1138.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.952	1	32.952	32.452	33.452	0								0	0	0	0.90023	1	12178	12178		15.847	1.9411	1		+		226	12709	179	179	210	210					0.027274765546508206
AATNGKAG	8	Unmodified	_AATNGKAG_					0	0	0			REV__ENSG00000221887|ENST00000408945|HMSD	REV__ENSG00000221887|ENST00000408945|HMSD	MULTI-SECPEP	HCT116MG_D190212_S4	4	688.6923217773438	1	689.357679	688.350402	0.94982	0.00065477	-1.3299	-0.00091678	-0.38008	-0.00026201	689.3600853398137	35.983	0.14709	35.598	35.526	35.673	-0.38558					4	2	2	0	0	0	0.3238	1	13174	13174		2.5775	0	1	1774600	+		227	11790	180	180	211	211					-0.006238749220528916
AATPDRPR	8	Unmodified	_AATPDRPR_					0	0	0		ENST00000521702.1_1_X:148585792-148593066:-|nuORF;ENST00000340855.10_2_X:148585792-148586725:-|nuORF	ENST00000521702.1_1_X:148585792-148593066:-|nuORF	ENST00000521702.1_1_X:148585792-148593066:-|nuORF	MSMS	HCT116MG_D190212_S4	4	442.2411804199219	2	442.240858	882.467164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.017	1	21.79	21.29	22.29	-0.22777								0	0	0	0.75335	1	7635	7635		26.341	1.6674	1				228	7214	181	181	212	212					0.021228632976999506
AATPEMEEEWE	11	Unmodified	_AATPEMEEEWE_					0	0	0			REV__ENSG00000169575|ENST00000403807|VPREB1	REV__ENSG00000169575|ENST00000403807|VPREB1	MSMS	HCT116MG_D190212_S3	3	661.2648315429688	2	661.266275	1320.518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.498	1	33.208	32.708	33.708	-0.29013								0	0	0	0.95113	1	12296	12296		5.7319	0.43497	1		+		229	13249	182	182	213	213					-0.12944065020928974
AATPNLGPVGP	11	Unmodified	_AATPNLGPVGP_					0	0	0		nc|ENSG00000078900|O15350-9|TP73;TP73|p.Y487Tfs*11|1|0.33|ENSG00000078900|chr1:3731034-3731034|C/-|frameshift_variant;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000078900|O15350-9|TP73	nc|ENSG00000078900|O15350-9|TP73	MSMS	HCT116MG_D190212_S4	4	497.27154541015625	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.84	1	21.622	21.122	22.122	-0.21832								0	0	0	0.85804	1	7563	7563		25.399	3.6527	1				230	1376	183	183	214	214					0.03253169926188093
AATPQKPEPKP	11	Unmodified	_AATPQKPEPKP_					0	0	0		ENSG00000079482|ENST00000355520|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	MSMS	HCT116MG_D190212_S1	1	582.3238525390625	2	582.324588	1162.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.599	1	31.599	31.099	32.099	0								0	0	0	0.92235	1	11632	11632		17.113	3.2068	1				231	1384	184	184	215	215					0.05981086051792772
AATQDELLYY	10	Unmodified	_AATQDELLYY_					0	0	0			REV__ENST00000547182.1_1_12:49954113-49956838:-|nuORF	REV__ENST00000547182.1_1_12:49954113-49956838:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	593.1580810546875	2	593.784961	1185.55537	0.73329	0.00043541	2.4167	0.001435	3.15	0.0018704	593.7866402685781	20.93	0.2114	20.93	20.8	21.012	0					5	3	2	0	0	0	0.30812	1	7361	7361		3.9444	0.66309	1	4864400	+		232	16408	185	185	216	216					-0.029986056930056293
AATQQNWDYRW	11	Unmodified	_AATQQNWDYRW_					0	0	0		nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	nc|ENSG00000100897|Q8TEB1-3|DCAF11	nc|ENSG00000100897|Q8TEB1-3|DCAF11	MSMS	HCT116MG_D190212_S4	4	719.8309326171875	2	719.828557	1437.64256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.983	1	17.808	17.308	18.308	-0.17501								0	0	0	0.92983	1	6005	6005		16.149	3.2765	1				233	1736	186	186	217	217					-0.05875386698744478
AATQTRMTAMW	11	Unmodified	_AATQTRMTAMW_					0	0	0			REV__ENST00000522492.1_1_5:148651531-148685943:+|nuORF	REV__ENST00000522492.1_1_5:148651531-148685943:+|nuORF	MSMS	HCT116MG_D190212_S1	1	634.2978515625	2	634.299733	1266.58491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.742	1	24.742	24.242	25.242	0								0	0	0	0.94538	1	8871	8871		8.7454	2.0222	1		+		234	16249	187	187	218	218					-0.03771688220172109
AATRCSSRPP	10	Unmodified	_AATRCSSRPP_					0	0	0		INSM1|p.G141Afs*95|1|0.14|ENSG00000173404|chr20:20368685-20368685|G/-|frameshift_variant	INSM1|p.G141Afs*95|1|0.14|ENSG00000173404|chr20:20368685-20368685|G/-|frameshift_variant	INSM1|p.G141Afs*95|1|0.14|ENSG00000173404|chr20:20368685-20368685|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	523.2626342773438	2	523.264007	1044.51346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.388	1	31.388	30.888	31.888	0								0	0	0	0.91906	1	11547	11547		11.64	2.2572	1				235	9242	188	188	219	219					-0.0070143986249604495
AATRHQGIDTH	11	Unmodified	_AATRHQGIDTH_					0	0	0			REV__nc|ENSG00000138395|Q96Q40-6|CDK15	REV__nc|ENSG00000138395|Q96Q40-6|CDK15	MULTI-MSMS	HCT116MG_D190212_S3	3	603.8032836914062	2	603.802343	1205.59013	0.47981	0.00028971	0.085768	5.1787E-05	0.56558	0.0003415	603.8023719629316	16.23	0.57193	16.315	16.081	16.653	0.085424					26	10	3	0	0	0	0.62391	1	5361	5361		32.786	11.249	1	14851000	+		236	16014	189	189	220	220					-0.004439250416680807
AATSLHLQPPQ	11	Unmodified	_AATSLHLQPPQ_					0	0	0		SETD1A|p.C243Afs*254|1|0.08|ENSG00000099381|chr16:30964176-30964176|C/-|frameshift_variant	SETD1A|p.C243Afs*254|1|0.08|ENSG00000099381|chr16:30964176-30964176|C/-|frameshift_variant	SETD1A|p.C243Afs*254|1|0.08|ENSG00000099381|chr16:30964176-30964176|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	581.8310546875	2	581.814387	1161.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.071	1	29.787	29.287	30.287	-0.28453								0	0	0	0.94145	1	11041	11041		10.8	0	1				237	18147	190	190	221	221					0.0398791539200829
AATTEKTEP	9	Unmodified	_AATTEKTEP_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;LIMCH1|p.K805Rfs*20|1|0.37|ENSG00000064042|chr4:41680049-41680049|A/-|frameshift_variant;LIMCH1|p.T960Pfs*48|1|0.18|ENSG00000064042|chr4:41685768-41685768|A/-|frameshift_variant;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MSMS	HCT116MG_D190212_S1	1	473.7638244628906	2	474.237647	946.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.767	1	18.767	18.267	19.267	0								0	0	0	0.53872	1	6470	6470		26.884	6.43	1				238	1134	191	191	222	222					-0.0146311944433819
AATTHPGPQPA	11	Unmodified	_AATTHPGPQPA_					0	0	0			REV__PRRT2|p.N53H|1|0.15|ENSG00000167371|chr16:29813211-29813211|A/C|missense_variant	REV__PRRT2|p.N53H|1|0.15|ENSG00000167371|chr16:29813211-29813211|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	524.264404296875	2	524.26453	1046.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.848	1	23.786	23.286	24.286	-0.061449								0	0	0	0.26284	1	8440	8440		63.961	22.005	1		+		239	17443	192	192	223	223					-0.0068890222196387185
AATTRCSD	8	Unmodified	_AATTRCSD_					0	0	0			REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF	REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF	MSMS	HCT116MG_D190212_S3	3	412.6802978515625	2	412.681985	823.349416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.279	1	19.339	18.839	19.839	0.05983								0	0	0	0.8837	1	6601	6601		10.183	0	1		+		240	16209	193	193	224	224					-0.06932457353275367
AATVAGVH	8	Unmodified	_AATVAGVH_					0	0	0		ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MULTI-MSMS	HCT116MG_D190212_S4	4	363.2005615234375	2	363.20067	724.386788	0.0085753	3.1146E-06	-0.14298	-5.1929E-05	-0.1344	-4.8814E-05	363.2004877818084	22.034	0.62334	21.806	21.416	22.039	-0.22777					19	11	2	0	0	0	0.8029	1	7584	7584		11.114	0	1	5216800			241	6512	194	194	225	225					0.013570019746566686
AATVSYADERT	11	Unmodified	_AATVSYADERT_					0	0	0		tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	tr|U7SGM4|U7SGM4_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02244PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	592.7984619140625	2	592.283117	1182.55168	0.76736	0.00045449	-0.019292	-1.1426E-05	0.74806	0.00044307	592.2830038913871	28.619	0.31157	28.287	28.064	28.376	-0.33138					10	5	3	0	0	0	0.36231	1	10229	10229		5.2969	5.2969	1	3787300			242	18298	195	195	226	226					-0.03229275466878789
AATYNQAAQ	9	Unmodified	_AATYNQAAQ_					0	0	0		ENST00000536995.5_1_11:72535848-72537775:+|nuORF;nc|ENSG00000168010|Q8NAA4-2|ATG16L2;ENSG00000168010|ENST00000321297|ATG16L2	ENST00000536995.5_1_11:72535848-72537775:+|nuORF	ENST00000536995.5_1_11:72535848-72537775:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	469.22222900390625	2	469.222331	936.430109	-0.12682	-5.9508E-05	4.1207	0.0019335	3.9939	0.001874	469.22230118171836	17.828	0.41563	17.653	17.428	17.844	-0.17501					14	7	3	0	0	0	0.37539	1	5974	5974		24.021	3.606	1	2044900			243	4974	196	196	227	227					-0.04064853038721594
AAVACGYP	8	Unmodified	_AAVACGYP_					0	0	0		ENST00000513775.1_1_4:44680541-44682717:+|nuORF	ENST00000513775.1_1_4:44680541-44682717:+|nuORF	ENST00000513775.1_1_4:44680541-44682717:+|nuORF	MSMS	HCT116MG_D190212_S4	4	376.1745300292969	2	376.175807	750.337061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.669	1	40.291	39.791	40.791	-0.37828								0	0	0	0.8837	1	14929	14929		6.3541	3.4649	1				244	8515	197	197	228	228					-0.04809449025640333
AAVDAGFL	8	Unmodified	_AAVDAGFL_					0	0	0		ENSG00000189433|ENST00000339480|GJB4	ENSG00000189433|ENST00000339480|GJB4	ENSG00000189433|ENST00000339480|GJB4	MSMS	HCT116MG_D190212_S2	2	382.2027587890625	2	382.202879	762.391205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.882	1	41.814	41.314	42.314	-0.068199								0	0	0	0.8217	1	15838	15838		20.871	1.4322	1				245	6039	198	198	229	229					0.0005046639755619253
AAVGGRAG	8	Unmodified	_AAVGGRAG_					0	0	0		ENST00000359205.9_1_1:155657965-155658551:-|nuORF	ENST00000359205.9_1_1:155657965-155658551:-|nuORF	ENST00000359205.9_1_1:155657965-155658551:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	658.3642578125	1	658.363099	657.355822	0.50352	0.0003315	2.4088	0.0015859	2.9123	0.0019174	658.3645662242257	36.004	0.20762	35.704	35.574	35.781	-0.30042					5	3	2	0	0	0	0.84415	1	13317	13317		6.3541	3.4649	1	4332500			246	7332	199	199	230	230					0.013438486604172795
AAVPLAAP	8	Unmodified	_AAVPLAAP_					0	0	0			REV__ENSG00000145715|ENST00000274376|RASA1	REV__ENSG00000145715|ENST00000274376|RASA1	MSMS	HCT116MG_D190212_S2	2	355.2154235839844	2	355.215789	708.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.508	1	11.226	10.726	11.726	-0.28186								0	0	0	0.8837	1	3712	3712		0.79363	0	1		+		247	12456	200	200	231	231					0.051153606398429474
AAVQPAFMAAP	11	Unmodified	_AAVQPAFMAAP_					0	0	0			REV__nc|ENSG00000124523|Q9NXA8-4|SIRT5	REV__nc|ENSG00000124523|Q9NXA8-4|SIRT5	MULTI-MSMS	HCT116MG_D190212_S2	2	537.75634765625	2	537.276052	1072.53755	0.40211	0.00021604	1.5919	0.00085527	1.994	0.0010713	537.27712132154	21.519	0.77873	21.134	20.544	21.323	-0.38472					21	14	2	0	0	0	0.74191	1	7576	7576		6.2058	0	1	10345000	+		248	11786	201	201	232	232					0.004184005711294958
AAVVVVTG	8	Unmodified	_AAVVVVTG_					0	0	0		nc|ENSG00000257594|Q8N4A0-2|GALNT4;ENST00000547474.1_3_12:89916592-89919989:-|nuORF	nc|ENSG00000257594|Q8N4A0-2|GALNT4	nc|ENSG00000257594|Q8N4A0-2|GALNT4	MSMS	HCT116MG_D190212_S4	4	358.2221984863281	2	358.221072	714.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.764	1	57.469	56.969	57.969	-0.29465								0	0	0	0.8837	1	21691	21691		0.79363	0	1				249	8734	202	202	233	233					0.058953432942871586
AAWAGQIG	8	Unmodified	_AAWAGQIG_					0	0	0			REV__ENST00000219334.9_1_16:68405177-68405606:-|nuORF	REV__ENST00000219334.9_1_16:68405177-68405606:-|nuORF	MSMS	HCT116MG_D190212_S4	4	387.2007751464844	2	387.20067	772.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.303	1	53.979	53.479	54.479	-0.32349								0	0	0	0.8837	1	20300	20300		0.79363	0	1		+		250	14516	203	203	234	234					-0.00850998025350691
AAWVRCLPKL	10	Unmodified	_AAWVRCLPKL_					0	0	0			REV__nc|ENSG00000196943|Q86U38-2|NOP9	REV__nc|ENSG00000196943|Q86U38-2|NOP9	MSMS	HCT116MG_D190212_S1	1	386.22845458984375	3	386.226833	1155.65867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.924	1	31.924	31.424	32.424	0								0	0	0	0.92845	1	11763	11763		9.544	1.0997	1		+		251	14053	204	204	235	235					0.08706648004476847
AAYGEGPQ	8	Unmodified	_AAYGEGPQ_					0	0	0			REV__ENSG00000073861|ENST00000177694|TBX21	REV__ENSG00000073861|ENST00000177694|TBX21	MULTI-MSMS	HCT116MG_D190212_S3	3	396.6795654296875	2	396.679768	791.344983	-0.12117	-4.8065E-05	0.068559	2.7196E-05	-0.05261	-2.0869E-05	396.67970384084845	20.342	0.72904	20.39	19.895	20.624	0.048107					19	13	2	0	0	0	0.62424	1	6980	6980		30.225	2.0516	1	3553900	+		252	10792	205	205	236	236					-0.05903598504517049
AAYGEGPQ	8	Unmodified	_AAYGEGPQ_					0	0	0			REV__ENSG00000073861|ENST00000177694|TBX21	REV__ENSG00000073861|ENST00000177694|TBX21	MULTI-MSMS	HCT116MG_D190212_S4	4	792.3515014648438	1	792.352259	791.344983	0.90401	0.00071629	-0.71039	-0.00056288	0.19362	0.00015342	792.3516183621157	20.25	0.83174	20.049	19.625	20.456	-0.20133					23	15	2	0	0	0	0.55794	1	6892	6892		36.044	5.8194	1	2395600	+		253	10792	205	205	237	237					-0.05903598504517049
AAYHVPRWER	10	Unmodified	_AAYHVPRWER_					0	0	0			REV__nc|ENSG00000137494|Q8N9B4-2|ANKRD42	REV__nc|ENSG00000137494|Q8N9B4-2|ANKRD42	MSMS	HCT116MG_D190212_S2	2	428.89111328125	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.393	1	11.111	10.611	11.611	-0.28186								0	0	0	0.97045	1	3668	3668		0.15932	0.01943	1		+		254	12177	206	206	238	238					0.021858460973135152
AAYYAQRMIQY	11	Unmodified	_AAYYAQRMIQY_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;ENST00000529558.1_1_11:46526218-46534359:-|nuORF;nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MSMS	HCT116MG_D190212_S2	2	689.45458984375	2	689.33463	1376.65471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.494	1	49.335	48.835	49.835	-0.1589								0	0	0	0.95521	1	18944	18944		3.5965	0.31518	1				255	2250	207	207	239	239					-0.018554862798964677
ACHSCSED	8	Unmodified	_ACHSCSED_					0	0	0		ENSG00000163362|ENST00000413687|INAVA;nc|ENSG00000163362|Q3KP66|INAVA	ENSG00000163362|ENST00000413687|INAVA	ENSG00000163362|ENST00000413687|INAVA	MSMS	HCT116MG_D190212_S4	4	426.1371765136719	2	426.136553	850.258552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8768	1	9.6775	9.1775	10.177	-0.1993								0	0	0	0.8837	1	3027	3027		0.79363	0.79363	1				256	4594	208	208	240	240					-0.17256669393054835
ACLGAGEY	8	Unmodified	_ACLGAGEY_					0	0	0		ENST00000375128.4_1_9:100456034-100459626:-|nuORF	ENST00000375128.4_1_9:100456034-100459626:-|nuORF	ENST00000375128.4_1_9:100456034-100459626:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	783.3342895507812	1	783.334166	782.32689	0.62602	0.00049038	0.088282	6.9154E-05	0.7143	0.00055954	783.3340847420858	31.528	0.31325	31.258	31.064	31.378	-0.27028					7	5	2	0	0	0	0.71835	1	11547	11547		20.871	6.2895	1	4944200			257	7504	209	209	241	241					-0.07298056750892101
ACLVLSLRHVP	11	Unmodified	_ACLVLSLRHVP_					0	0	0			REV__ENST00000417262.5_1_1:202780753-202780990:+|nuORF	REV__ENST00000417262.5_1_1:202780753-202780990:+|nuORF	MSMS	HCT116MG_D190212_S4	4	604.1624145507812	2	604.352625	1206.6907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.811	1	43.437	42.937	43.937	-0.37433								0	0	0	0.94538	1	16118	16118		8.7454	2.0222	1		+		258	15487	210	210	242	242					0.09562015687629355
ACMCCCPS	8	Unmodified	_ACMCCCPS_					0	0	0			REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	MSMS	HCT116MG_D190212_S1	1	409.11041259765625	2	409.112123	816.209693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.377	1	13.377	12.877	13.877	0								0	0	0	0.8837	1	4343	4343		2.5775	1.7838	1		+		259	16002	211	211	243	243					-0.2057632054966234
ACMCCCPS	8	Unmodified	_ACMCCCPS_					0	0	0			REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	MSMS	HCT116MG_D190212_S2	2	409.1107177734375	2	409.112123	816.209693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.793	1	11.504	11.004	12.004	-0.28953								0	0	0	0.8837	1	3821	3821		0.69038	0.69038	1		+		260	16002	211	211	244	244					-0.2057632054966234
ACMCCCPS	8	Unmodified	_ACMCCCPS_					0	0	0			REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	MSMS	HCT116MG_D190212_S4	4	409.1106262207031	2	409.112123	816.209693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.25	1	11.069	10.569	11.569	-0.18135								0	0	0	0.8837	1	3471	3471		0.69038	0.69038	1		+		261	16002	211	211	245	245					-0.2057632054966234
ACMCCCPS	8	Unmodified	_ACMCCCPS_					0	0	0			REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	MSMS	HCT116MG_D190212_S4	4	409.1106262207031	2	409.112123	816.209693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.77	1	11.596	11.096	12.096	-0.17441								0	0	0	0.8837	1	3636	3636		0.69038	0.69038	1		+		262	16002	211	211	246	246					-0.2057632054966234
ACMCCCPS	8	Unmodified	_ACMCCCPS_					0	0	0			REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	MSMS	HCT116MG_D190212_S4	4	409.11041259765625	2	409.112123	816.209693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.944	1	14.783	14.283	15.283	-0.16089								0	0	0	0.8837	1	4777	4777		0.69038	0.69038	1		+		263	16002	211	211	247	247					-0.2057632054966234
ACMCCCPS	8	Unmodified	_ACMCCCPS_					0	0	0			REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	REV__ENST00000487159.5_2_3:42266898-42266988:+|nuORF	MSMS	HCT116MG_D190212_S4	4	409.1106262207031	2	409.112123	816.209693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.99	1	62.746	62.246	63.246	-0.24392								0	0	0	0.8837	1	23783	23783		0.69038	0.69038	1		+		264	16002	211	211	248	248					-0.2057632054966234
ACNRLWYVLF	10	Unmodified	_ACNRLWYVLF_					0	0	0			REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF	REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.890109	1283.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5409	1	1.2764	0.77637	1.7764	-0.26456								0	0	0	0.97045	1	466	466		0.15932	0.064481	1		+		265	15449	212	212	249	249					0.018020402792217283
ACPRPCGAGP	10	Unmodified	_ACPRPCGAGP_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-6|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-6|HDAC7	MULTI-MSMS	HCT116MG_D190212_S3	3	464.71014404296875	2	464.710022	927.405491	0.29628	0.00013768	0.87354	0.00040594	1.1698	0.00054363	464.71040245091984	19.875	1.0418	19.923	19.218	20.259	0.048109					26	19	2	0	0	0	0.76634	1	6692	6692		14.838	1.3304	1	4279500	+		266	17073	213	213	250	250					-0.06111527717439458
ACQFCEQDPP	10	Unmodified	_ACQFCEQDPP_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-MSMS	HCT116MG_D190212_S1	1	569.2208251953125	2	569.220617	1136.42668	0.19625	0.00011171	-0.22522	-0.0001282	-0.028972	-1.6491E-05	569.2205171807543	32.18	1.0423	32.18	31.492	32.534	0					32	19	3	0	0	0	0.77749	1	11879	11879		13.906	3.0821	1	9629300			267	1395	214	214	251	251					-0.1360760719924201
ACQFCEQDPP	10	Unmodified	_ACQFCEQDPP_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-MSMS	HCT116MG_D190212_S4	4	569.2206420898438	2	569.220617	1136.42668	0.50796	0.00028914	-0.10523	-5.99E-05	0.40273	0.00022924	569.220621856	32.629	1.4015	32.25	31.17	32.572	-0.37924					48	26	3	0	0	0	0.77749	1	11908	11908		13.906	3.0821	1	15771000			268	1395	214	214	252	252					-0.1360760719924201
ADAAPGAPAPQ	11	Unmodified	_ADAAPGAPAPQ_					0	0	0		GNB1L|p.R37Afs*150|1|0.25|ENSG00000185838|chr22:19821251-19821252|-/T|frameshift_variant	GNB1L|p.R37Afs*150|1|0.25|ENSG00000185838|chr22:19821251-19821252|-/T|frameshift_variant	GNB1L|p.R37Afs*150|1|0.25|ENSG00000185838|chr22:19821251-19821252|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2378234863281	2	483.237981	964.461409	0.18177	8.784E-05	0.029307	1.4162E-05	0.21108	0.000102	483.2378390930336	18.623	0.52079	18.693	18.406	18.927	0.069159					15	9	3	0	0	0	0.41825	1	6341	6341		53.404	1.7742	1	5262700			269	9183	215	215	253	253					-0.022242800046228695
ADAFLVCPQ	9	Unmodified	_ADAFLVCPQ_					0	0	0			REV__ENST00000528882.5_1_11:57067274-57087552:-|nuORF	REV__ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MSMS	HCT116MG_D190212_S4	4	482.2352294921875	2	482.233853	962.453153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.337	1	20.135	19.635	20.635	-0.20133								0	0	0	0.42657	1	6955	6955		32.305	1.6689	1		+		270	12558	216	216	254	254					-0.029575502456054892
ADAHDNSAICK	11	Unmodified	_ADAHDNSAICK_					0	0	0			REV__nc|ENSG00000179057|Q8N9C0|IGSF22	REV__nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-MSMS	HCT116MG_D190212_S2	2	572.7569580078125	2	572.756212	1143.49787	0.38259	0.00021913	-0.1717	-9.8342E-05	0.21089	0.00012079	572.7562181389354	16.847	0.57233	16.506	16.1	16.672	-0.34183					17	10	2	0	0	0	0.72792	1	5661	5661		11.495	2.5185	1	6881900	+		271	13625	217	217	255	255					-0.06813771170209293
ADASIRLLKA	10	Unmodified	_ADASIRLLKA_					0	0	0		nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF;ENSG00000056736|ENST00000288167|IL17RB	nc|ENSG00000056736|Q9NRM6-2|IL17RB	nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MSMS	HCT116MG_D190212_S1	1	529.3219604492188	2	529.321848	1056.62914	0.52063	0.00027558	-0.14306	-7.5723E-05	0.37758	0.00019986	529.3217581263266	33.099	0.25985	33.099	32.933	33.193	0					7	4	2	0	0	0	0.48296	1	12244	12244		41.956	3.78	1	27326000			272	1089	218	218	256	256					0.10309407260001535
ADASPAPGSPP	11	Unmodified	_ADASPAPGSPP_					0	0	0		ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	MULTI-MSMS	HCT116MG_D190212_S3	3	485.71832275390625	2	483.729989	965.445425	0.087184	4.2173E-05	0.12939	6.259E-05	0.21657	0.00010476	483.7299962283824	30.995	0.62605	30.735	30.5	31.126	-0.26071					32	11	5	0	0	0	0.69749	1	11242	11242		22.736	2.2827	1	94531000			273	5211	219	219	257	257					-0.03867986241516519
ADCMDGSDEE	10	Unmodified	_ADCMDGSDEE_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;ENST00000451724.6_1_12:57597195-57598570:+|nuORF	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	HCT116MG_D190212_S1	1	536.1653442382812	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.07	1	51.07	50.57	51.57	0								0	0	0	0.9696	1	19502	19502		0.35063	0.35063	1				274	2800	220	220	258	258					-0.21549077329086685
ADCMDGSDEE	10	Unmodified	_ADCMDGSDEE_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;ENST00000451724.6_1_12:57597195-57598570:+|nuORF	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	HCT116MG_D190212_S3	3	536.16552734375	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.929	1	15.013	14.513	15.513	0.083271								0	0	0	0.96377	1	4846	4846		1.6526	0	1				275	2800	220	220	259	259					-0.21549077329086685
ADEWEWAP	8	Unmodified	_ADEWEWAP_					0	0	0			REV__nc|ENSG00000074527|Q9HB63-3|NTN4	REV__nc|ENSG00000074527|Q9HB63-3|NTN4	MULTI-MSMS	HCT116MG_D190212_S4	4	502.7486267089844	2	502.211432	1002.40831	0.22501	0.000113	0.086232	4.3307E-05	0.31125	0.00015631	502.21142014018284	32.196	0.57088	31.82	31.538	32.109	-0.37529					20	10	3	0	0	0	0.85329	1	11631	11631		4.756	4.756	1	14648000	+		276	10798	221	221	260	260					-0.09279657787283213
ADFVRNGP	8	Unmodified	_ADFVRNGP_					0	0	0			REV__ENSG00000130956|ENST00000375249|HABP4	REV__ENSG00000130956|ENST00000375249|HABP4	MULTI-MSMS	HCT116MG_D190212_S2	2	438.22235107421875	2	438.222134	874.429715	-0.0036579	-1.603E-06	-0.016722	-7.3281E-06	-0.02038	-8.931E-06	438.222132926415	20.271	0.2088	19.891	19.761	19.969	-0.37949					6	3	2	0	0	0	0.62424	1	7105	7105		30.225	1.738	1	9757400	+		277	11949	222	222	261	261					-0.012522279679046733
ADFVRNGP	8	Unmodified	_ADFVRNGP_					0	0	0			REV__ENSG00000130956|ENST00000375249|HABP4	REV__ENSG00000130956|ENST00000375249|HABP4	MULTI-MATCH	HCT116MG_D190212_S1	1		2	438.222134	874.429715	-0.065747	-2.8812E-05	0.0038995	1.7089E-06	-0.061847	-2.7103E-05	438.2220441072136	19.591	0.15656	19.591	19.495	19.652	0	-0.14992	4.1304E-06	NaN	30.225	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1980900	+		278	11949	222	222							-0.012522279679046733
ADFVRNGP	8	Unmodified	_ADFVRNGP_					0	0	0			REV__ENSG00000130956|ENST00000375249|HABP4	REV__ENSG00000130956|ENST00000375249|HABP4	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	438.222134	874.429715	-0.0036579	-1.603E-06	-0.016722	-7.3281E-06	-0.02038	-8.931E-06	438.222132926415	20.271	0.2088	19.891	19.761	19.969	-0.37949	0.14992	-1.3943E-05	NaN	30.225	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9757400	+		279	11949	222	222							-0.012522279679046733
ADGDVYYPERC	11	Unmodified	_ADGDVYYPERC_					0	0	0		LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF	LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant	LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	644.2673950195312	2	644.269152	1286.52375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.697	1	22.46	21.96	22.96	-0.23758								0	0	0	0.93456	1	7910	7910		14.405	2.1647	1				280	3827	223	223	262	262					-0.10804921718590776
ADGEKATALY	10	Unmodified	_ADGEKATALY_					0	0	0		GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant;ENSG00000179562|ENST00000321407|GCC1	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	GCC1|p.T633Afs*8|1|0.05|ENSG00000179562|chr7:127582446-127582447|-/CA|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	519.32275390625	2	519.758746	1037.50294	0.63531	0.00033021	-0.24689	-0.00012832	0.38843	0.00020189	519.7586092037424	17.489	0.15672	17.489	17.359	17.516	0					4	2	2	0	0	0	0.29716	1	5932	5932		7.1017	0	1	2669500			281	5561	224	224	263	263					-0.014311440359733751
ADGLIQEIG	9	Unmodified	_ADGLIQEIG_					0	0	0			REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	458.2425537109375	2	458.242732	914.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.804	1	40.425	39.925	40.925	-0.37828								0	0	0	0.21855	1	14983	14983		46.021	0	1		+		282	17993	225	225	264	264					0.010254882809022092
ADGPEPQPQ	9	Unmodified	_ADGPEPQPQ_					0	0	0			REV__ENST00000337963.8_2_13:20436577-20437761:-|nuORF	REV__ENST00000337963.8_2_13:20436577-20437761:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	469.71441650390625	2	469.714339	937.414125	0.34666	0.00016283	-0.33635	-0.00015799	0.01031	4.8427E-06	469.714190461902	20.29	0.52166	20.29	20.07	20.592	0					15	9	2	0	0	0	0.26536	1	7109	7109		34.402	1.616	1	2555500	+		283	14957	226	226	265	265					-0.05708559275615244
ADGPEPQPQ	9	Unmodified	_ADGPEPQPQ_					0	0	0			REV__ENST00000337963.8_2_13:20436577-20437761:-|nuORF	REV__ENST00000337963.8_2_13:20436577-20437761:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	469.71405029296875	2	469.714339	937.414125	0.12344	5.7983E-05	0.19062	8.9536E-05	0.31406	0.00014752	469.71427476094595	20.329	1.2498	20.377	19.582	20.832	0.048107					59	23	3	0	0	0	0.13316	1	6847	6847		51.63	11.391	1	27240000	+		284	14957	226	226	266	266					-0.05708559275615244
ADGPEPQPQ	9	Unmodified	_ADGPEPQPQ_					0	0	0			REV__ENST00000337963.8_2_13:20436577-20437761:-|nuORF	REV__ENST00000337963.8_2_13:20436577-20437761:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	469.71441650390625	2	469.714339	937.414125	0.1388	6.5196E-05	0.11292	5.3041E-05	0.25172	0.00011824	469.7142482204321	20.625	1.1906	20.423	19.525	20.716	-0.20133					59	22	4	0	0	0	0.1935	1	6770	6770		41.956	4.8809	1	25880000	+		285	14957	226	226	267	267					-0.05708559275615244
ADIIGHLSEM	10	Unmodified	_ADIIGHLSEM_					0	0	0			REV__tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	REV__tr|U7SST5|U7SST5_FUSNUHistidineammonia-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hutHPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	543.26904296875	2	543.268424	1084.5223	0.73632	0.00040002	0.28796	0.00015644	1.0243	0.00055646	543.2685002737925	31.473	0.20684	31.225	31.095	31.302	-0.24883					5	3	2	0	0	0	0.71349	1	11617	11617		19.257	1.122	1	12587000	+		286	17779	227	227	268	268					-0.016585110166943196
ADKVHLMY	8	Unmodified	_ADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	488.7497863769531	2	488.74967	975.484787	0.41008	0.00020043	-0.18835	-9.2057E-05	0.22173	0.00010837	488.7495226593724	35.967	0.2606	35.967	35.837	36.098	0					8	4	2	0	0	0	0.094591	1	13413	13413		96.285	28.941	1	15905000			287	2724	228	228	269	269					-0.003935574916454243
ADKVHLMY	8	Unmodified	_ADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	488.7499084472656	2	488.74967	975.484787	0.59998	0.00029324	-0.21703	-0.00010607	0.38295	0.00018717	488.7496502604997	36.021	0.31037	35.893	35.761	36.071	-0.12799					13	5	3	0	0	0	0.049954	1	13466	13466		123.45	41.838	1	47468000			288	2724	228	228	270	270					-0.003935574916454243
ADLNRFVEE	9	Unmodified	_ADLNRFVEE_					0	0	0			REV__ENST00000392442.6_1_12:122990076-122998315:-|nuORF	REV__ENST00000392442.6_1_12:122990076-122998315:-|nuORF	MSMS	HCT116MG_D190212_S3	3	546.77001953125	2	546.769645	1091.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.351	1	25.245	24.745	25.745	-0.10618								0	0	0	0.67173	1	9046	9046		20.454	0	1		+		289	11418	229	229	271	271					-0.017363392873676275
ADMFKWQIIQ	10	Unmodified	_ADMFKWQIIQ_					0	0	0		CATSPER2|p.R369W|1|0.09|ENSG00000166762|chr15:43635743-43635743|G/A|missense_variant	CATSPER2|p.R369W|1|0.09|ENSG00000166762|chr15:43635743-43635743|G/A|missense_variant	CATSPER2|p.R369W|1|0.09|ENSG00000166762|chr15:43635743-43635743|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	640.3308715820312	2	640.328816	1278.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.596	1	14.676	14.176	15.176	0.079683								0	0	0	0.95507	1	4711	4711		3.5965	0.31518	1				290	334	230	230	272	272					0.014903166967769721
ADMGHLKY	8	Unmodified	_ADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S1	1	467.72613525390625	2	467.726195	933.437837	0.21457	0.00010036	-0.040548	-1.8965E-05	0.17402	8.1393E-05	467.7260589591856	33.841	0.2612	33.841	33.711	33.972	0					7	4	2	0	0	0	0.064348	1	12560	12560		108	47.607	1	19245000			291	3198	231	231	273	273					-0.03154417042787827
ADMGHLKY	8	Unmodified	_ADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S2	2	467.72613525390625	2	467.726195	933.437837	0.16326	7.636E-05	0.018997	8.8852E-06	0.18226	8.5246E-05	467.7260634228773	33.961	0.31089	33.786	33.657	33.967	-0.17512					12	5	3	0	0	0	0.04112	1	12641	12641		133.7	62.986	1	112010000			292	3198	231	231	274	274					-0.03154417042787827
ADMGHLKY	8	Unmodified	_ADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S3	3	467.7260437011719	2	467.726195	933.437837	0.3051	0.0001427	-0.4051	-0.00018948	-0.099998	-4.6772E-05	467.7259917656141	34.231	0.20809	33.937	33.819	34.027	-0.29419					5	3	2	0	0	0	0.33298	1	12604	12604		56.177	22.075	1	6668700			293	3198	231	231	275	275					-0.03154417042787827
ADNKIQCIYKG	11	Unmodified	_ADNKIQCIYKG_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	626.7994384765625	2	626.821355	1251.62816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.577	1	23.329	22.829	23.829	-0.24775								0	0	0	0.93607	1	8262	8262		13.615	2.1202	1		+		294	12706;18029	232	232	276	276					0.01240824828755649
ADPIDYYPQ	9	Unmodified	_ADPIDYYPQ_					0	0	0			REV__PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant	REV__PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	541.246337890625	2	541.245472	1080.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.52	1	35.134	34.634	35.634	-0.38606								0	0	0	0.76694	1	12999	12999		11.64	0	1		+		295	14356	233	233	277	277					-0.06062832927295858
ADRARRQRPLR	11	Unmodified	_ADRARRQRPLR_					0	0	0			REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	MSMS	HCT116MG_D190212_S1	1	697.916015625	2	697.913624	1393.8127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.186	1	28.186	27.686	28.686	0								0	0	0	0.95567	1	10259	10259		6.6304	3.3491	1		+		296	16116	234	234	278	278					0.13154193814216342
ADRNTPPPP	9	Unmodified	_ADRNTPPPP_					0	0	0		ENST00000587757.5_1_18:13612520-13612649:+|nuORF	ENST00000587757.5_1_18:13612520-13612649:+|nuORF	ENST00000587757.5_1_18:13612520-13612649:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	483.7363586425781	2	482.745973	963.477394	0.08877	4.2853E-05	0.22335	0.00010782	0.31212	0.00015067	482.7460220666331	19.574	0.36542	19.574	19.443	19.809	0					16	6	4	0	0	0	0.43775	1	6835	6835		20.454	1.0917	1	63431000			297	9011	235	235	279	279					-0.005805737677178513
ADTIFVTAP	9	Unmodified	_ADTIFVTAP_					0	0	0		nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant;CLTCL1|p.T738Qfs*24|1|0.03|ENSG00000070371|chr22:19223971-19223972|-/TTCTG|frameshift_variant;CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant	nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant	nc|ENSG00000070371|P53675-2|CLTCL1	MULTI-MSMS	HCT116MG_D190212_S1	1	934.3238525390625	1	934.488024	933.480748	0.75176	0.00070251	0.41878	0.00039135	1.1705	0.0010939	934.4882382869024	48.589	0.30871	48.589	48.408	48.717	0					13	5	3	0	0	0	0.016134	1	18469	18469		100.37	7.5494	1	48182000			298	1237;482	236	236	280	280					0.011346762862672222
ADTTLDESIY	10	Unmodified	_ADTTLDESIY_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2599487304688	2	564.258776	1126.503	0.35311	0.00019925	1.5402	0.00086906	1.8933	0.0010683	564.7613187980036	54.121	0.26084	53.821	53.665	53.925	-0.29946					6	4	2	0	0	0	0.64004	1	20515	20515		25.399	6.1423	1	4557200			299	5741	237	237	281	281					-0.05519188826588106
ADVEHLVGPQK	11	Unmodified	_ADVEHLVGPQK_					0	0	0			REV__tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	REV__tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	596.8201293945312	2	596.81967	1191.62479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.572	1	22.553	22.053	23.053	-0.018869								0	0	0	0.91979	1	7926	7926		17.443	1.2935	1		+		300	17778	238	238	282	282					0.036638980464203996
AEAAAAGP	8	Unmodified	_AEAAAAGP_					0	0	0			REV__ENST00000369214.2_1_6:100062108-100062660:+|nuORF	REV__ENST00000369214.2_1_6:100062108-100062660:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	657.1871337890625	1	657.320231	656.312954	0.68938	0.00045314	-0.15261	-0.00010031	0.53677	0.00035283	657.3202210688459	23.552	0.57319	23.512	23.187	23.76	-0.03968					14	10	2	0	0	0	0.19769	1	8247	8247		56.541	2.9657	1	2522200	+		301	15141	239	239	283	283					-0.028949661876708888
AEAAAAPAA	9	Unmodified	_AEAAAAPAA_					0	0	0		ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	MULTI-MSMS	HCT116MG_D190212_S3	3	742.3739624023438	1	742.372995	741.365718	0.43244	0.00032103	1.2077	0.00089653	1.6401	0.0012176	742.3737977294512	18.988	0.20818	19.057	18.927	19.135	0.069159					5	3	2	0	0	0	0.088989	1	6502	6502		60.39	2.9182	1	4217000			302	1639	240	240	284	284					-0.015310081248685492
AEAAAAPAAA	10	Unmodified	_AEAAAAPAAA_					0	0	0		ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	MULTI-MSMS	HCT116MG_D190212_S2	2	813.410400390625	1	813.410108	812.402832	0.81517	0.00066307	-0.20213	-0.00016441	0.61304	0.00049865	813.409879022173	19.995	0.25912	19.62	19.506	19.765	-0.37503					7	4	2	0	0	0	0.019944	1	6985	6985		120.45	12.453	1	7357000			303	1639	241	241	285	285					-0.010873365791098877
AEAAAAPAAA	10	Unmodified	_AEAAAAPAAA_					0	0	0		ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	MULTI-MSMS	HCT116MG_D190212_S3	3	813.4107055664062	1	813.410108	812.402832	0.94533	0.00076894	0.27355	0.00022251	1.2189	0.00099145	813.410186913363	19.56	0.3125	19.62	19.49	19.802	0.05983					8	5	2	0	0	0	0.019944	1	6721	6721		120.45	12.453	1	7251500			304	1639	241	241	286	286					-0.010873365791098877
AEAAAAPAAA	10	Unmodified	_AEAAAAPAAA_					0	0	0		ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	MULTI-MSMS	HCT116MG_D190212_S4	4	813.410400390625	1	813.410108	812.402832	0.88793	0.00072225	0.084673	6.8874E-05	0.9726	0.00079112	813.4098823744968	19.748	0.19822	19.554	19.434	19.632	-0.19367					5	3	2	0	0	0	0.032253	1	6725	6725		100.37	22.222	1	1567600			305	1639	241	241	287	287					-0.010873365791098877
AEAAAAPTV	9	Unmodified	_AEAAAAPTV_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-MSMS	HCT116MG_D190212_S2	2	800.4158935546875	1	800.414859	799.407583	0.9503	0.00076063	-0.14675	-0.00011746	0.80355	0.00064317	800.4148027571176	27.663	0.36098	27.321	27.139	27.5	-0.34201					9	6	2	0	0	0	0.012168	1	10067	10067		108	19.093	1	19787000			306	1993	242	242	288	288					-0.00014452436346346076
AEAAAAPTV	9	Unmodified	_AEAAAAPTV_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	800.414859	799.407583	0.95995	0.00076836	0.037731	3.0201E-05	0.99769	0.00079856	800.4146575824283	27.627	0.46791	27.439	27.257	27.725	-0.18847	0.044208	0.00013103	NaN	108	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9886200			307	1993	242	242							-0.00014452436346346076
AEAAAAPTV	9	Unmodified	_AEAAAAPTV_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	800.414859	799.407583	0.93062	0.00074489	-0.39694	-0.00031772	0.53368	0.00042717	800.4143245821728	27.746	0.30211	27.424	27.304	27.606	-0.32157	0.02933	-0.00021689	NaN	108	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4495500			308	1993	242	242							-0.00014452436346346076
AEAAAHRPPP	10	Unmodified	_AEAAAHRPPP_					0	0	0		ENST00000377321.5_1_11:64577571-64578006:-|nuORF	ENST00000377321.5_1_11:64577571-64578006:-|nuORF	ENST00000377321.5_1_11:64577571-64578006:-|nuORF	MSMS	HCT116MG_D190212_S1	1	508.7375793457031	2	508.76724	1015.51993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.678	1	30.678	30.178	31.178	0								0	0	0	0.90023	1	11261	11261		15.847	1.0089	1				309	7526	243	243	289	289					0.012788213605062992
AEAAALEVL	9	Unmodified	_AEAAALEVL_					0	0	0		nc|ENSG00000122952|O95229-2|ZWINT;ENSG00000122952|ENST00000373944|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	MULTI-MSMS	HCT116MG_D190212_S2	2	886.4885864257812	1	886.488024	885.480748	0.81625	0.0007236	1.1457	0.0010156	1.9619	0.0017392	886.4878823566473	51.533	0.30912	51.35	51.166	51.475	-0.18368					13	5	3	0	0	0	0.031005	1	19781	19781		85.357	10.934	1	28942000			310	9441	244	244	290	290					0.033426762862859505
AEAAALEVL	9	Unmodified	_AEAAALEVL_					0	0	0		nc|ENSG00000122952|O95229-2|ZWINT;ENSG00000122952|ENST00000373944|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	MULTI-MSMS	HCT116MG_D190212_S3	3	886.4881591796875	1	886.488024	885.480748	0.7737	0.00068587	-0.1839	-0.00016303	0.58979	0.00052284	886.4877843937206	51.72	0.31408	51.41	51.227	51.541	-0.30927					10	5	2	0	0	0	0.031005	1	19541	19541		85.357	7.3724	1	7102400			311	9441	244	244	291	291					0.033426762862859505
AEAAAMAYG	9	Unmodified	_AEAAAMAYG_					0	0	0			REV__nc|ENSG00000010295|Q0D2I5|IFFO1	REV__nc|ENSG00000010295|Q0D2I5|IFFO1	MSMS	HCT116MG_D190212_S4	4	427.6885681152344	2	427.689278	853.364004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.777	1	34.391	33.891	34.891	-0.38606								0	0	0	0.46961	1	12712	12712		30.225	3.8835	1		+		312	10514	245	245	292	292					-0.06854385205122071
AEAAAVHGA	9	Unmodified	_AEAAAVHGA_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	HCT116MG_D190212_S1	1	398.7010192871094	2	398.701035	795.387516	0.13507	5.3853E-05	-0.44608	-0.00017785	-0.311	-0.000124	398.7007872438657	17.426	0.20891	17.426	17.307	17.516	0					5	3	2	0	0	0	0.17018	1	5942	5942		44.407	12.102	1	3369400			313	9475	246	246	293	293					-0.01836203376285539
AEAAAVHGA	9	Unmodified	_AEAAAVHGA_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	HCT116MG_D190212_S2	2	398.70086669921875	2	398.701035	795.387516	-0.046602	-1.858E-05	0.083447	3.327E-05	0.036845	1.469E-05	398.70098211595837	17.875	0.36551	17.519	17.388	17.754	-0.35647					10	6	2	0	0	0	0.035402	1	6117	6117		81.864	24.393	1	30506000			314	9475	246	246	294	294					-0.01836203376285539
AEAAAVHGA	9	Unmodified	_AEAAAVHGA_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	HCT116MG_D190212_S2	2	796.394775390625	1	796.394793	795.387516	0.85916	0.00068423	-0.40407	-0.0003218	0.45508	0.00036243	796.3943768233521	17.875	0.26123	17.519	17.388	17.65	-0.35647					7	4	2	0	0	0	0.005725	1	6122	6122		131.3	69.94	1	16598000			315	9475	246	246	295	295					-0.01836203376285539
AEAAAVHGA	9	Unmodified	_AEAAAVHGA_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	HCT116MG_D190212_S3	3	398.70098876953125	2	398.701035	795.387516	-0.15392	-6.1367E-05	-0.017191	-6.854E-06	-0.17111	-6.8221E-05	398.7008831953066	16.854	0.20817	16.938	16.808	17.016	0.084467					5	3	2	0	0	0	0.10839	1	5650	5650		56.541	20.414	1	2702300			316	9475	246	246	296	296					-0.01836203376285539
AEAAEKTHDP	10	Unmodified	_AEAAEKTHDP_					0	0	0			REV__nc|ENSG00000132153|Q7L2E3-2|DHX30	REV__nc|ENSG00000132153|Q7L2E3-2|DHX30	MSMS	HCT116MG_D190212_S3	3	534.7509155273438	2	534.751453	1067.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.583	1	23.543	23.043	24.043	-0.03968								0	0	0	0.90892	1	8333	8333		13.906	1.3745	1		+		317	17130	247	247	297	297					-0.042692161840932386
AEAAERPPS	9	Unmodified	_AEAAERPPS_					0	0	0		ENST00000388995.10_2_17:18907286-18907481:-|nuORF	ENST00000388995.10_2_17:18907286-18907481:-|nuORF	ENST00000388995.10_2_17:18907286-18907481:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	464.2301025390625	2	464.230156	926.445759	0.21401	9.935E-05	0.010064	4.6719E-06	0.22407	0.00010402	464.2301342714576	17.144	0.83343	16.795	16.196	17.03	-0.34933					20	15	3	0	0	0	0.043159	1	5827	5827		78.06	15.488	1	15058000			318	7592	248	248	298	298					-0.02040566521668552
AEAAERPPS	9	Unmodified	_AEAAERPPS_					0	0	0		ENST00000388995.10_2_17:18907286-18907481:-|nuORF	ENST00000388995.10_2_17:18907286-18907481:-|nuORF	ENST00000388995.10_2_17:18907286-18907481:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	464.2303771972656	2	464.230156	926.445759	0.26818	0.0001245	0.16299	7.5667E-05	0.43117	0.00020016	464.2303014037929	16.23	0.67612	16.315	15.769	16.445	0.085424					19	12	3	0	0	0	0.064006	1	5372	5372		67.838	23.98	1	5525200			319	7592	248	248	299	299					-0.02040566521668552
AEAAERPPS	9	Unmodified	_AEAAERPPS_					0	0	0		ENST00000388995.10_2_17:18907286-18907481:-|nuORF	ENST00000388995.10_2_17:18907286-18907481:-|nuORF	ENST00000388995.10_2_17:18907286-18907481:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	464.230156	926.445759	0.21497	9.9795E-05	0.19906	9.241E-05	0.41403	0.0001922	464.230105245368	16.759	0.20811	16.759	16.629	16.837	0	-0.017742	0.00014346	NaN	78.06	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3152000			320	7592	248	248							-0.02040566521668552
AEAAESVRL	9	Unmodified	_AEAAESVRL_					0	0	0		ENST00000382580.6_1_22:29130686-29137805:-|nuORF	ENST00000382580.6_1_22:29130686-29137805:-|nuORF	ENST00000382580.6_1_22:29130686-29137805:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	473.76971435546875	2	473.253631	944.49271	0.35418	0.00016762	-0.11561	-5.4711E-05	0.23857	0.00011291	473.2535219811826	22.514	0.62291	22.128	21.947	22.57	-0.3852					28	11	4	0	0	0	0.35128	1	8118	8118		25.399	3.8623	1	209400000			321	7583	249	249	300	300					0.018242930294718462
AEAAGARPAGP	11	Unmodified	_AEAAGARPAGP_					0	0	0		ENST00000380283.4_1_6:3751974-3752178:-|nuORF	ENST00000380283.4_1_6:3751974-3752178:-|nuORF	ENST00000380283.4_1_6:3751974-3752178:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.25213623046875	2	484.251423	966.488293	0.061797	2.9925E-05	0.29256	0.00014167	0.35436	0.0001716	484.251629986034	18.127	0.36543	17.771	17.493	17.858	-0.35647					11	6	3	0	0	0	0.57532	1	6231	6231		38.176	7.539	1	7461800			322	7562	250	250	301	301					0.003708286065716493
AEAAGARPAGP	11	Unmodified	_AEAAGARPAGP_					0	0	0		ENST00000380283.4_1_6:3751974-3752178:-|nuORF	ENST00000380283.4_1_6:3751974-3752178:-|nuORF	ENST00000380283.4_1_6:3751974-3752178:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	484.2514343261719	2	484.251423	966.488293	-0.072951	-3.5327E-05	-0.020305	-9.8326E-06	-0.093256	-4.5159E-05	484.2514550340534	17.27	0.31227	17.354	17.173	17.485	0.084467					8	5	2	0	0	0	0.55672	1	5792	5792		40.239	16.219	1	3808100			323	7562	250	250	302	302					0.003708286065716493
AEAAGEVRA	9	Unmodified	_AEAAGEVRA_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	437.2248229980469	2	437.224874	872.435195	-0.0036142	-1.5802E-06	0.06179	2.7016E-05	0.058176	2.5436E-05	437.22484508771095	20.011	0.36345	19.636	19.506	19.869	-0.37503					12	6	3	0	0	0	0.030039	1	6993	6993		86.332	11.403	1	20886000			324	6818	251	251	303	303					-0.006125491760940349
AEAAGEVRA	9	Unmodified	_AEAAGEVRA_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	873.4426879882812	1	873.442471	872.435195	0.79836	0.00069732	-0.41617	-0.0003635	0.38219	0.00033382	873.4421391013313	20.011	0.25912	19.636	19.506	19.765	-0.37503					7	4	2	0	0	0	0.011132	1	7002	7002		110.55	28.023	1	7476200			325	6818	251	251	304	304					-0.006125491760940349
AEAAGEVRA	9	Unmodified	_AEAAGEVRA_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	437.224853515625	2	437.224874	872.435195	0.14063	6.1486E-05	-0.077422	-3.3851E-05	0.063205	2.7635E-05	437.22481519985183	19.196	0.25989	19.265	19.135	19.395	0.069159					8	4	2	0	0	0	0.012596	1	6589	6589		106.94	25.327	1	13160000			326	6818	251	251	305	305					-0.006125491760940349
AEAAGEVRA	9	Unmodified	_AEAAGEVRA_					0	0	0		ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	ENST00000256015.4_1_12:92539535-92539610:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	437.2250061035156	2	437.224874	872.435195	0.22517	9.8452E-05	-0.0061432	-2.6859E-06	0.21903	9.5766E-05	437.2248622658183	19.498	0.25999	19.311	19.181	19.441	-0.18674					7	4	2	0	0	0	0.040027	1	6623	6623		79.596	8.4627	1	3592900			327	6818	251	251	306	306					-0.006125491760940349
AEAAGKYSA	9	Unmodified	_AEAAGKYSA_					0	0	0		ENSG00000104450|ENST00000388798|SPAG1;ENST00000523302.1_1_8:101225364-101237414:+|nuORF	ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	MSMS	HCT116MG_D190212_S2	2	434.2140197753906	2	434.213975	866.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.524	1	18.161	17.661	18.661	-0.36325								0	0	0	0.32687	1	6371	6371		38.176	0.20157	1				328	1935	252	252	307	307					-0.02515353924673036
AEAAGLHKV	9	Unmodified	_AEAAGLHKV_					0	0	0		TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant	TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	448.4298400878906	2	448.253434	894.492316	0.14954	6.7033E-05	-0.083928	-3.7621E-05	0.065615	2.9412E-05	448.2533242743244	20.946	0.15577	20.563	20.443	20.598	-0.38288					4	2	2	0	0	0	0.18296	1	7335	7335		32.786	2.1491	1	3708000			329	1348	253	253	308	308					0.04084918100284085
AEAARGWKRI	10	Unmodified	_AEAARGWKRI_					0	0	0		ENST00000351554.7_1_11:33753007-33757986:-|nuORF	ENST00000351554.7_1_11:33753007-33757986:-|nuORF	ENST00000351554.7_1_11:33753007-33757986:-|nuORF	MSMS	HCT116MG_D190212_S2	2	579.3311157226562	2	579.330539	1156.64652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.379	1	35.237	34.737	35.737	-0.14245								0	0	0	0.94107	1	13195	13195		6.7232	0	1				330	7276	254	254	309	309					0.07446747585663616
AEAASKWAA	9	Unmodified	_AEAASKWAA_					0	0	0		PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	452.7301330566406	2	452.729792	903.445031	0.34417	0.00015581	-0.97328	-0.00044063	-0.62911	-0.00028482	452.72987700594297	27.476	0.25843	27.134	27.037	27.295	-0.34201					9	4	3	0	0	0	0.011132	1	9996	9996		110.55	53.304	1	23699000			331	3275	255	255	310	310					-0.010553611707223354
AEAASKWAA	9	Unmodified	_AEAASKWAA_					0	0	0		PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	452.7297058105469	2	452.729792	903.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.325	1	27.156	26.656	27.656	-0.16933								0	0	0	0.0099415	1	9842	9842		106.94	37.835	1				332	3275	255	255	311	311					-0.010553611707223354
AEAASKWAA	9	Unmodified	_AEAASKWAA_					0	0	0		PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	453.2270202636719	2	452.729792	903.445031	0.38001	0.00017204	-4.3492	-0.001969	-3.9692	-0.001797	452.7295368053113	27.507	0.41527	27.185	26.888	27.304	-0.32157					13	7	3	0	0	0	0.066823	2	9847	9847;9871		66.457	30.33	1	3474900			333	3275	255	255	312;313	312					-0.010553611707223354
AEAASKWAA	9	Unmodified	_AEAASKWAA_					0	0	0		PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	452.729792	903.445031	0.057919	2.6222E-05	0.57662	0.00026105	0.63453	0.00028727	452.72975972242284	27.006	0.20783	27.006	26.865	27.073	0	-0.1025	0.0013199	NaN	110.55	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3403500			334	3275	255	255							-0.010553611707223354
AEAASRNW	8	Unmodified	_AEAASRNW_					0	0	0		ENST00000388768.6_2_10:70166722-70166869:-|nuORF	ENST00000388768.6_2_10:70166722-70166869:-|nuORF	ENST00000388768.6_2_10:70166722-70166869:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	452.71728515625	2	452.717216	903.419879	0.085273	3.8605E-05	0.1918	8.6829E-05	0.27707	0.00012543	452.7172608050877	26.916	0.26297	26.563	26.45	26.713	-0.35254					6	4	2	0	0	0	0.53596	1	9794	9794		37.974	3.0419	1	11427000			335	7587	256	256	314	314					-0.035694159732884145
AEAATAFGA	9	Unmodified	_AEAATAFGA_					0	0	0		nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	808.3834228515625	1	808.383559	807.376283	0.8775	0.00070936	-0.026346	-2.1298E-05	0.85116	0.00068806	808.3834858963016	33.91	0.57127	33.735	33.552	34.124	-0.17512					12	10	2	0	0	0	0.031005	1	12603	12603		85.357	7.3724	1	45975000			336	2848	257	257	315	315					-0.03511025470425011
AEAAVVAVA	9	Unmodified	_AEAAVVAVA_					0	0	0		ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	MULTI-MSMS	HCT116MG_D190212_S2	2	800.4517822265625	1	800.451245	799.443968	1.1286	0.0009034	0.06185	4.9508E-05	1.1905	0.00095291	800.4511705619266	34.48	0.72456	34.305	34.124	34.848	-0.17512					33	13	4	0	0	0	0.050578	1	12809	12809		74.423	10.186	1	1343600000			337	6399	258	258	316	316					0.036224244603772604
AEAAVVAVA	9	Unmodified	_AEAAVVAVA_					0	0	0		ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	MULTI-MSMS	HCT116MG_D190212_S3	3	800.4515991210938	1	800.451245	799.443968	0.63765	0.00051041	0.0026021	2.0829E-06	0.64025	0.00051249	800.4511413087541	34.556	0.93469	34.259	34.025	34.959	-0.29707					54	17	5	0	0	0	0.031005	1	12696	12696		85.357	10.934	1	650040000			338	6399	258	258	317	317					0.036224244603772604
AEAAVVAVA	9	Unmodified	_AEAAVVAVA_					0	0	0		ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	MULTI-MSMS	HCT116MG_D190212_S4	4	800.4512939453125	1	800.451245	799.443968	0.83356	0.00066722	-0.07409	-5.9305E-05	0.75947	0.00060792	800.4510647206338	34.751	0.91968	34.365	34.087	35.006	-0.38606					46	17	4	0	0	0	0.050578	1	12662	12662		74.423	10.186	1	473070000			339	6399	258	258	318	318					0.036224244603772604
AEAAVVFAV	9	Unmodified	_AEAAVVFAV_					0	0	0		DOLK|p.D221Tfs*11|1|0.44|ENSG00000175283|chr9:128946643-128946643|C/-|frameshift_variant;ENSG00000175283|ENST00000372586|DOLK	DOLK|p.D221Tfs*11|1|0.44|ENSG00000175283|chr9:128946643-128946643|C/-|frameshift_variant	DOLK|p.D221Tfs*11|1|0.44|ENSG00000175283|chr9:128946643-128946643|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	876.4840698242188	1	876.482545	875.475269	0.7509	0.00065815	-0.013431	-1.1772E-05	0.73747	0.00064638	876.482841209097	53.792	0.20689	53.602	53.48	53.687	-0.1894					5	3	2	0	0	0	0.16144	1	20725	20725		46.021	3.053	1	11399000			340	726	259	259	319	319					0.03254997494479994
AEACSGERT	9	Unmodified	_AEACSGERT_					0	0	0		ENST00000510363.1_1_5:177580490-177580818:-|nuORF;ENSG00000145912|ENST00000274606|NHP2	ENST00000510363.1_1_5:177580490-177580818:-|nuORF	ENST00000510363.1_1_5:177580490-177580818:-|nuORF	MSMS	HCT116MG_D190212_S3	3	462.1466979980469	2	462.197999	922.381445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.196	1	33.902	33.402	34.402	-0.29419								0	0	0	0.76718	1	12578	12578		10.824	4.4698	1				341	3932	260	260	320	320					-0.08285089670107482
AEADKIGLLLA	11	Unmodified	_AEADKIGLLLA_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1;ENST00000485760.5_1_1:58809069-58993004:-|nuORF;ENST00000467509.5_1_1:58881067-58996314:-|nuORF	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.3009033203125	2	557.329339	1112.64412	0.3676	0.00020487	-0.43508	-0.00024248	-0.067481	-3.7609E-05	557.3289503706192	52.819	0.25737	52.63	52.449	52.706	-0.18922					6	4	2	0	0	0	0.33028	1	20307	20307		35.612	17.466	1	7689300			342	4533	261	261	321	321					0.09230854337351957
AEADKIGLLLA	11	Unmodified	_AEADKIGLLLA_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1;ENST00000485760.5_1_1:58809069-58993004:-|nuORF;ENST00000467509.5_1_1:58881067-58996314:-|nuORF	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-SECPEP	HCT116MG_D190212_S3	3	557.300537109375	2	557.329339	1112.64412	0.56901	0.00031713	-1.229	-0.00068496	-0.65999	-0.00036783	557.3284839336837	53.102	0.20912	52.799	52.669	52.878	-0.30305					5	3	2	0	0	0	0.31624	1	20095	20095		44.392	20.602	1	1791700			343	4533	261	261	322	322					0.09230854337351957
AEADKTIKV	9	Unmodified	_AEADKTIKV_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	HCT116MG_D190212_S1	1	487.77960205078125	2	487.779482	973.544411	0.43173	0.00021059	-0.2684	-0.00013092	0.16333	7.9671E-05	487.7793205564613	24.542	0.20888	24.542	24.412	24.621	0					6	3	2	0	0	0	0.021544	1	8813	8813		94.909	21.941	1	6231800			344	5205	262	262	323	323					0.056580367233777906
AEADKTIKV	9	Unmodified	_AEADKTIKV_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	HCT116MG_D190212_S2	2	487.7795104980469	2	487.779482	973.544411	0.30403	0.0001483	0.1011	4.9316E-05	0.40513	0.00019762	487.7794976206109	25.1	0.31247	24.725	24.556	24.868	-0.37521					11	5	3	0	0	0	0.0064513	1	9031	9031		124.95	32.3	1	49139000			345	5205	262	262	324	324					0.056580367233777906
AEADKTIKV	9	Unmodified	_AEADKTIKV_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	HCT116MG_D190212_S3	3	487.7796630859375	2	487.779482	973.544411	0.11736	5.7244E-05	0.20263	9.8837E-05	0.31998	0.00015608	487.7794982460868	24.555	0.26055	24.471	24.289	24.549	-0.083694					7	4	2	0	0	0	0.013592	1	8734	8734		104.48	21.955	1	7164900			346	5205	262	262	325	325					0.056580367233777906
AEAEAAAVHGA	11	Unmodified	_AEAEAAAVHGA_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MSMS	HCT116MG_D190212_S2	2	498.7402038574219	2	498.740888	995.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.884	1	20.502	20.002	21.002	-0.38288								0	0	0	0.49457	1	7321	7321		47.749	7.7914	1				347	9475	263	263	326	326					-0.030691814929582506
AEAEAAAVHGA	11	Unmodified	_AEAEAAAVHGA_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MSMS	HCT116MG_D190212_S3	3	498.7410888671875	2	498.740888	995.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.207	1	20.255	19.755	20.755	0.048107								0	0	0	0.00076726	1	6975	6975		103.75	36.404	1				348	9475	263	263	327	327					-0.030691814929582506
AEAEAALQKA	10	Unmodified	_AEAEAALQKA_					0	0	0		ENST00000529563.5_1_11:17515913-17538079:-|nuORF;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;ENSG00000006611|ENST00000005226|USH1C	ENST00000529563.5_1_11:17515913-17538079:-|nuORF	ENST00000529563.5_1_11:17515913-17538079:-|nuORF	MSMS	HCT116MG_D190212_S2	2	501.26641845703125	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.204	1	24.828	24.328	25.328	-0.37521								0	0	0	0.45592	1	9066	9066		49.933	21.446	1				349	832	264	264	328	328					0.01868562200957058
AEAEAFLKKA	10	Unmodified	_AEAEAFLKKA_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF;ENST00000487114.1_1_1:36644989-36645856:+|nuORF	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-SECPEP	HCT116MG_D190212_S2	2	539.7620239257812	2	539.300581	1076.58661	0.68994	0.00037208	0.2733	0.00014739	0.96324	0.00051947	539.3004441445811	31.733	0.20757	31.484	31.354	31.561	-0.24883					5	3	2	0	0	0	0.22894	1	11699	11699		55.235	38.122	1	9819200			350	2546	265	265	329	329					0.05138012131783398
AEAEALARSA	10	Unmodified	_AEAEALARSA_					0	0	0		ENSG00000146828|ENST00000354161|SLC12A9	ENSG00000146828|ENST00000354161|SLC12A9	ENSG00000146828|ENST00000354161|SLC12A9	MULTI-MSMS	HCT116MG_D190212_S1	1	494.75653076171875	2	494.756538	987.498523	0.2072	0.00010251	0.17157	8.4886E-05	0.37877	0.0001874	494.7565837392846	25.223	0.52168	25.223	25.04	25.561	0					20	9	3	0	0	0	0.2047	1	9129	9129		59.013	9.4856	1	45238000			351	3961	266	266	330	330					0.00427391541131783
AEAEARAEA	9	Unmodified	_AEAEARAEA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;TRO|p.A653D|1|0.64|ENSG00000067445|chrX:54928682-54928682|C/A|missense_variant;ENST00000494718.5_1_X:51643260-51645023:+|nuORF;ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;ENSG00000067445|ENST00000173898|TRO;TRO|p.S1034Rfs*10|1|0.07|ENSG00000067445|chrX:54929826-54929826|C/-|frameshift_variant	ENSG00000179222|ENST00000326587|MAGED1;ENST00000492706.5_1_X:54953428-54957450:+|nuORF	ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	917.4329833984375	1	917.4323	916.425024	0.60923	0.00055893	0.22055	0.00020234	0.82978	0.00076127	917.4324718288043	16.114	0.26133	15.78	15.689	15.951	-0.33451					5	4	2	0	0	0	0.0158	1	5429	5429		100.71	14.377	1	4196500			352	1185;5543	267	267	331	331					-0.03653156901339116
AEAEARSTP	9	Unmodified	_AEAEARSTP_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MSMS	HCT116MG_D190212_S1	1	466.2276306152344	2	466.227613	930.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.154	1	16.154	15.654	16.654	0								0	0	0	0.067027	1	5417	5417		65.474	11.898	1				353	5181	268	268	332	332					-0.027328703842840696
AEAEARSTP	9	Unmodified	_AEAEARSTP_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	HCT116MG_D190212_S2	2	466.22760009765625	2	466.227613	930.440674	0.15233	7.102E-05	0.15278	7.1232E-05	0.30511	0.00014225	466.2276148442534	16.363	0.62583	16.022	15.786	16.412	-0.34183					22	11	3	0	0	0	0.022505	1	5487	5487		93.938	29.978	1	28809000			354	5181	268	268	333	333					-0.027328703842840696
AEAEARSTP	9	Unmodified	_AEAEARSTP_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	HCT116MG_D190212_S2	2	931.4487915039062	1	931.44795	930.440674	0.80593	0.00075068	0.4093	0.00038124	1.2152	0.0011319	931.4484701985419	16.363	0.31342	16.022	15.839	16.152	-0.34183					7	5	2	0	0	0	0.043159	1	5526	5526		78.06	46.792	1	3819800			355	5181	268	268	334	334					-0.027328703842840696
AEAEASRSP	9	Unmodified	_AEAEASRSP_					0	0	0		ENST00000415912.6_1_1:21544206-21544590:-|nuORF	ENST00000415912.6_1_1:21544206-21544590:-|nuORF	ENST00000415912.6_1_1:21544206-21544590:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	459.7217102050781	2	459.219788	916.425024	0.10159	4.6653E-05	0.0091121	4.1844E-06	0.1107	5.0838E-05	459.2197040874916	15.926	0.26039	15.926	15.796	16.056	0					5	4	2	0	0	0	0.14768	1	5336	5336		43.772	10.327	1	3226600			356	7755	269	269	335	335					-0.036531569013277476
AEAEAVAA	8	Unmodified	_AEAEAVAA_					0	0	0		nc|ENSG00000139154|Q6ZN18|AEBP2;ENSG00000139154|ENST00000266508|AEBP2;ENST00000583350.1_1_18:14377547-14378720:-|nuORF;TERF1|p.L86Afs*29|1|0.3|ENSG00000147601|chr8:73009141-73009144|TCTT/-|frameshift_variant;nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1	nc|ENSG00000139154|Q6ZN18|AEBP2;TERF1|p.L86Afs*29|1|0.3|ENSG00000147601|chr8:73009141-73009144|TCTT/-|frameshift_variant	TERF1|p.L86Afs*29|1|0.3|ENSG00000147601|chr8:73009141-73009144|TCTT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	731.3575439453125	1	731.35701	730.349734	0.9316	0.00068133	-0.067465	-4.9341E-05	0.86413	0.00063199	731.3568012776802	21.98	0.46897	21.595	21.427	21.896	-0.38503					12	8	2	0	0	0	0.083541	1	7755	7755		98.807	12.686	1	22696000			357	3603;3993	270	270	336	336					-0.026227143617575166
AEAEAVAA	8	Unmodified	_AEAEAVAA_					0	0	0		nc|ENSG00000139154|Q6ZN18|AEBP2;ENSG00000139154|ENST00000266508|AEBP2;ENST00000583350.1_1_18:14377547-14378720:-|nuORF;TERF1|p.L86Afs*29|1|0.3|ENSG00000147601|chr8:73009141-73009144|TCTT/-|frameshift_variant;nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1	nc|ENSG00000139154|Q6ZN18|AEBP2;TERF1|p.L86Afs*29|1|0.3|ENSG00000147601|chr8:73009141-73009144|TCTT/-|frameshift_variant	TERF1|p.L86Afs*29|1|0.3|ENSG00000147601|chr8:73009141-73009144|TCTT/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	731.35701	730.349734	0.78566	0.00057459	0.30189	0.00022079	1.0875	0.00079539	731.357009281076	21.681	0.20837	21.681	21.542	21.75	0	0.043079	0.00021555	NaN	98.807	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5955000			358	3603;3993	270	270							-0.026227143617575166
AEAEAVAVA	9	Unmodified	_AEAEAVAVA_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	830.4268188476562	1	830.425424	829.418148	0.771	0.00064026	0.60835	0.00050519	1.3794	0.0011454	830.4258082644764	28.808	0.25415	28.492	28.352	28.606	-0.31613					7	4	2	0	0	0	0.019399	1	10554	10554		97.075	22.652	1	16037000			359	10730;4729;18167	271	271	337	337					-0.0033846978190013033
AEAEAVAVA	9	Unmodified	_AEAEAVAVA_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	830.42529296875	1	830.425424	829.418148	0.99894	0.00082954	-0.33106	-0.00027492	0.66788	0.00055462	830.4250256626782	28.825	0.36452	28.603	28.473	28.838	-0.22195					11	6	2	0	0	0	0.031005	1	10456	10456		85.357	10.934	1	13386000			360	10730;4729;18167	271	271	338	338					-0.0033846978190013033
AEAEAVAVA	9	Unmodified	_AEAEAVAVA_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	830.4252319335938	1	830.425424	829.418148	0.76185	0.00063266	-0.21598	-0.00017935	0.54587	0.00045331	830.4251376325863	28.979	0.4155	28.638	28.418	28.834	-0.34059					10	7	2	0	0	0	0.043314	1	10459	10459		77.984	0	1	5674300			361	10730;4729;18167	271	271	339	339					-0.0033846978190013033
AEAEAVREV	9	Unmodified	_AEAEAVREV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MSMS	HCT116MG_D190212_S2	2	487.25128173828125	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.618	1	25.249	24.749	25.749	-0.36914								0	0	0	0.34207	1	9233	9233		37.075	6.4381	1				362	1778	272	272	340	340					0.0002798916685833319
AEAEELLEP	9	Unmodified	_AEAEELLEP_					0	0	0		AluSz_dup37824|chr7:44800399-44800695:-|1.3496941177838604|0.0026438264880892|9.0|476.0|6|2|sense	AluSz_dup37824|chr7:44800399-44800695:-|1.3496941177838604|0.0026438264880892|9.0|476.0|6|2|sense	AluSz_dup37824|chr7:44800399-44800695:-|1.3496941177838604|0.0026438264880892|9.0|476.0|6|2|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	500.74505615234375	2	500.745305	999.476056	0.25333	0.00012686	-0.98761	-0.00049454	-0.73428	-0.00036769	500.74485052823013	18.174	0.41768	17.818	17.597	18.015	-0.35647					11	7	2	0	0	0	0.51829	1	6266	6266		15.847	15.847	1	5506300			363	114	273	273	341	341					-0.023702526471311103
AEAEEQPARIP	11	Unmodified	_AEAEEQPARIP_					0	0	0			REV__ENSG00000167702|ENST00000645548|KIFC2	REV__ENSG00000167702|ENST00000645548|KIFC2	MULTI-SECPEP	HCT116MG_D190212_S3	3	606.2681884765625	2	605.806759	1209.59897	0.50933	0.00030856	0.44907	0.00027205	0.9584	0.00058061	606.3085733493326	19.619	0.46879	19.678	19.386	19.854	0.05983					12	8	2	0	0	0	0.36367	1	6689	6689		0.26902	0	1	3274300	+		364	13162	274	274	342	342					0.002550038041363223
AEAEETARTA	10	Unmodified	_AEAEETARTA_					0	0	0		ENST00000520536.1_1_8:22475798-22477192:+|nuORF;nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2;ENST00000521436.5_1_8:22475932-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	524.7490234375	2	524.74891	1047.48327	0.34066	0.00017876	-0.070326	-3.6903E-05	0.27034	0.00014186	524.7488389197506	16.084	0.26061	16.084	15.952	16.213	0					10	4	3	0	0	0	0.048437	1	5413	5413		88.364	38.431	1	11532000			365	4391	275	275	343	343					-0.03857520046699392
AEAEETARTA	10	Unmodified	_AEAEETARTA_					0	0	0		ENST00000520536.1_1_8:22475798-22477192:+|nuORF;nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2;ENST00000521436.5_1_8:22475932-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	524.7490234375	2	524.74891	1047.48327	0.3503	0.00018382	0.088134	4.6248E-05	0.43843	0.00023007	524.7489209406978	16.36	0.62583	16.018	15.786	16.412	-0.34183					32	9	6	0	0	0	0.09647	1	5523	5523		74.772	20.939	1	101530000			366	4391	275	275	344	344					-0.03857520046699392
AEAEETARTA	10	Unmodified	_AEAEETARTA_					0	0	0		ENST00000520536.1_1_8:22475798-22477192:+|nuORF;nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2;ENST00000521436.5_1_8:22475932-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1048.49072265625	1	1048.49054	1047.48327	0.64126	0.00067235	-0.46981	-0.00049259	0.17145	0.00017976	1048.4899728791754	16.363	0.1567	16.022	15.943	16.1	-0.34183					4	2	2	0	0	0	0.01041	1	5527	5527		146.68	70.919	1	4502300			367	4391	275	275	345	345					-0.03857520046699392
AEAEETARTA	10	Unmodified	_AEAEETARTA_					0	0	0		ENST00000520536.1_1_8:22475798-22477192:+|nuORF;nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2;ENST00000521436.5_1_8:22475932-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7493286132812	2	524.74891	1047.48327	0.3526	0.00018502	0.19376	0.00010167	0.54635	0.0002867	524.7489283637332	15.501	0.36485	15.586	15.456	15.821	0.085423					17	6	4	0	0	0	0.017881	1	5079	5079		125.18	32.528	1	17944000			368	4391	275	275	346	346					-0.03857520046699392
AEAEETRGRLA	11	Unmodified	_AEAEETRGRLA_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	HCT116MG_D190212_S2	2	601.8103637695312	2	601.809833	1201.60511	0.68729	0.00041362	-0.028761	-1.7309E-05	0.65853	0.00039631	601.8097882160388	19.647	0.25961	19.272	19.091	19.351	-0.37503					9	4	3	0	0	0	0.38536	1	6839	6839		74.772	36.596	1	19981000			369	2004	276	276	347	347					0.012375220356716454
AEAEETRGRLA	11	Unmodified	_AEAEETRGRLA_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MSMS	HCT116MG_D190212_S3	3	601.8101196289062	2	601.809833	1201.60511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.64	1	18.71	18.21	19.21	0.069159								0	0	0	0.82783	1	6343	6343		35.612	18.499	1				370	2004	276	276	348	348					0.012375220356716454
AEAEETRGRLA	11	Unmodified	_AEAEETRGRLA_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MSMS	HCT116MG_D190212_S3	3	401.5422058105469	3	401.542314	1201.60511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.659	1	18.728	18.228	19.228	0.069159								0	0	0	0.91283	1	6351	6351		18.34	12.105	1				371	2004	276	276	349	349					0.012375220356716454
AEAEETRGRLA	11	Unmodified	_AEAEETRGRLA_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MATCH	HCT116MG_D190212_S1	1		2	601.809833	1201.60511	0.38911	0.00023417	0.61969	0.00037294	1.0088	0.00060711	601.8102188351795	19.001	0.20861	19.001	18.871	19.079	0	-0.13561	0.00050457	NaN	74.772	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2251000			372	2004	276	276							0.012375220356716454
AEAEGAPGP	9	Unmodified	_AEAEGAPGP_					0	0	0		ENSG00000206418|ENST00000649141|RAB12	ENSG00000206418|ENST00000649141|RAB12	ENSG00000206418|ENST00000649141|RAB12	MULTI-MSMS	HCT116MG_D190212_S3	3	798.3619384765625	1	798.362824	797.355547	0.64658	0.00051621	-0.44691	-0.00035679	0.19968	0.00015941	798.3626276783738	20.307	0.88492	20.355	20.103	20.988	0.048107					23	16	2	0	0	0	0.027492	1	7039	7039		88.904	18.188	1	3476300			373	6395	277	277	350	350					-0.051236158500842066
AEAEHQNLTA	10	Unmodified	_AEAEHQNLTA_					0	0	0		nc|ENSG00000141956|P57071|PRDM15;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15;PRDM15|p.E613Gfs*32|1|0.17|ENSG00000141956|chr21:41839754-41839755|-/C|frameshift_variant;PRDM15|p.E613Nfs*35|1|0.28|ENSG00000141956|chr21:41839755-41839755|C/-|frameshift_variant	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MSMS	HCT116MG_D190212_S1	1	542.257080078125	2	542.256902	1082.49925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.739	1	20.739	20.239	21.239	0								0	0	0	0.75242	1	7264	7264		34.932	8.0484	1				374	9482	278	278	351	351					-0.03869813809819789
AEAEHQNLTA	10	Unmodified	_AEAEHQNLTA_					0	0	0		nc|ENSG00000141956|P57071|PRDM15;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15;PRDM15|p.E613Gfs*32|1|0.17|ENSG00000141956|chr21:41839754-41839755|-/C|frameshift_variant;PRDM15|p.E613Nfs*35|1|0.28|ENSG00000141956|chr21:41839755-41839755|C/-|frameshift_variant	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2569580078125	2	542.256902	1082.49925	0.44825	0.00024307	-0.15637	-8.4795E-05	0.29188	0.00015827	542.2567059178557	21.169	0.36246	20.786	20.651	21.013	-0.38288					12	6	3	0	0	0	0.053614	1	7456	7456		84.522	31.118	1	20811000			375	9482	278	278	352	352					-0.03869813809819789
AEAEHQNLTA	10	Unmodified	_AEAEHQNLTA_					0	0	0		nc|ENSG00000141956|P57071|PRDM15;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15;PRDM15|p.E613Gfs*32|1|0.17|ENSG00000141956|chr21:41839754-41839755|-/C|frameshift_variant;PRDM15|p.E613Nfs*35|1|0.28|ENSG00000141956|chr21:41839755-41839755|C/-|frameshift_variant	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MULTI-MSMS	HCT116MG_D190212_S3	3	542.2567138671875	2	542.256902	1082.49925	0.33647	0.00018245	-0.38406	-0.00020826	-0.047587	-2.5804E-05	542.2567505482994	20.503	0.31244	20.537	20.402	20.714	0.034473					10	5	3	0	0	0	0.066546	1	7098	7098		80.676	36.904	1	6792500			376	9482	278	278	353	353					-0.03869813809819789
AEAEKIKAA	9	Unmodified	_AEAEKIKAA_					0	0	0		ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	MSMS	HCT116MG_D190212_S1	1	465.76629638671875	2	465.766374	929.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.08	1	17.08	16.58	17.58	0								0	0	0	0.27468	1	5790	5790		41.956	23.809	1				377	6636	279	279	354	354					0.050617675518992655
AEAEKIKAA	9	Unmodified	_AEAEKIKAA_					0	0	0		ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	MULTI-MSMS	HCT116MG_D190212_S2	2	465.76641845703125	2	465.766374	929.518196	0.2077	9.6739E-05	-0.10212	-4.7565E-05	0.10558	4.9174E-05	465.76626115273626	17.562	0.31321	17.213	17.082	17.395	-0.34933					12	5	3	0	0	0	0.0064416	1	6002	6002		125.04	48.213	1	33394000			378	6636	279	279	355	355					0.050617675518992655
AEAEKQLGA	9	Unmodified	_AEAEKQLGA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MSMS	HCT116MG_D190212_S2	2	458.7409362792969	2	458.740357	915.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.736	1	20.356	19.856	20.856	-0.37949								0	0	0	8.7364E-08	1	7261	7261		152.89	15.462	1				379	4018	280	280	356	356					0.005046041381433497
AEAEKQLGA	9	Unmodified	_AEAEKQLGA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S3	3	458.7403869628906	2	458.740357	915.46616	0.33162	0.00015213	-0.087675	-4.022E-05	0.24394	0.00011191	458.7402129510827	19.957	0.41674	20.005	19.843	20.259	0.048109					14	7	3	0	0	0	0.0046822	1	6878	6878		140.63	10.861	1	21239000			380	4018	280	280	357	357					0.005046041381433497
AEAEKQLGAA	10	Unmodified	_AEAEKQLGAA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2490234375	2	494.258914	986.503274	0.24649	0.00012183	-0.86376	-0.00042692	-0.61727	-0.00030509	494.2589592810122	21.422	0.20725	21.039	20.91	21.117	-0.38288					5	3	2	0	0	0	0.35312	1	7509	7509		45.74	15.103	1	5635100			381	4018	281	281	358	358					0.009482756839020112
AEAEKQLGAA	10	Unmodified	_AEAEKQLGAA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S3	3	493.8891296386719	2	494.258914	986.503274	0.10487	5.1834E-05	-3.9682	-0.0019613	-3.8633	-0.0019095	494.2590278323781	20.839	0.31219	20.874	20.662	20.975	0.034472					13	5	3	0	0	0	0.037651	2	7189	7189;7224		96.367	27.262	1	2882300			382	4018	281	281	359;360	359					0.009482756839020112
AEAEKQLQ	8	Unmodified	_AEAEKQLQ_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;nc|ENSG00000168496|P39748-2|FEN1	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	HCT116MG_D190212_S1	1	458.74041748046875	2	458.740357	915.46616	0.15832	7.263E-05	0.31233	0.00014328	0.47066	0.00021591	458.7402371094686	20.201	0.31307	20.201	20.07	20.383	0					6	5	2	0	0	0	0.094232	1	7056	7056		96.367	6.9659	1	6603400			383	5015	282	282	361	361					0.005046041381433497
AEAEKQLQ	8	Unmodified	_AEAEKQLQ_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;nc|ENSG00000168496|P39748-2|FEN1	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	HCT116MG_D190212_S4	4	458.7403869628906	2	458.740357	915.46616	0.1613	7.3996E-05	0.25907	0.00011884	0.42037	0.00019284	458.74034595752704	20.264	0.31187	20.062	19.936	20.248	-0.20133					10	5	3	0	0	0	0.12475	1	6950	6950		89.401	5.972	1	5199100			384	5015	282	282	362	362					0.005046041381433497
AEAELAAEEP	10	Unmodified	_AEAELAAEEP_					0	0	0			REV__ENST00000562289.1_1_16:67321760-67322708:+|nuORF	REV__ENST00000562289.1_1_16:67321760-67322708:+|nuORF	MSMS	HCT116MG_D190212_S3	3	515.2400512695312	2	515.240386	1028.46622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.022	1	18.099	17.599	18.599	0.076334								0	0	0	0.88261	1	6094	6094		18.146	0	1		+		385	14006	283	283	363	363					-0.046874406525148515
AEAEPAKETA	10	Unmodified	_AEAEPAKETA_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	HCT116MG_D190212_S1	1	508.7481384277344	2	508.748379	1015.4822	0.3601	0.0001832	-0.1294	-6.583E-05	0.2307	0.00011737	508.7482058857618	16.048	0.26053	16.048	15.9	16.161	0					6	4	2	0	0	0	0.61405	1	5401	5401		27.223	5.6863	1	1578500			386	6646	284	284	364	364					-0.0249173441561652
AEAEPAKETA	10	Unmodified	_AEAEPAKETA_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7485046386719	2	508.748379	1015.4822	0.29839	0.00015181	0.27144	0.00013809	0.56983	0.0002899	508.7483292333416	16.311	0.46948	15.969	15.786	16.256	-0.34183					17	8	3	0	0	0	0.05194	1	5481	5481		85.764	6.1681	1	19909000			387	6646	284	284	365	365					-0.0249173441561652
AEAEPAKETA	10	Unmodified	_AEAEPAKETA_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7484436035156	2	508.748379	1015.4822	0.21224	0.00010798	0.27967	0.00014228	0.49191	0.00025026	508.7483278611488	15.397	0.41665	15.482	15.352	15.769	0.085423					11	7	2	0	0	0	0.053614	1	5060	5060		84.522	8.7614	1	5032200			388	6646	284	284	366	366					-0.0249173441561652
AEAEPEPEL	9	Unmodified	_AEAEPEPEL_					0	0	0		nc|ENSG00000140939|O60936|NOL3;nc|ENSG00000140939|O60936-3|NOL3;ENSG00000141696|ENST00000393928|P3H4	nc|ENSG00000140939|O60936|NOL3	nc|ENSG00000140939|O60936|NOL3	MULTI-MSMS	HCT116MG_D190212_S3	3	984.452880859375	1	984.452033	983.444756	0.90114	0.00088713	0.10154	9.996E-05	1.0027	0.00098709	984.4522979867374	37.316	0.31208	37.015	36.821	37.133	-0.30137					9	5	2	0	0	0	0.0017266	1	13806	13806		188.58	32.421	1	5528000			389	9479	285	285	367	367					-0.047628256812231484
AEAEPPSEV	9	Unmodified	_AEAEPPSEV_					0	0	0		ENST00000513654.5_1_4:122731225-122735207:+|nuORF;nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9	ENST00000513654.5_1_4:122731225-122735207:+|nuORF	ENST00000513654.5_1_4:122731225-122735207:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	928.4271850585938	1	928.425818	927.418542	1.1568	0.001074	-0.37134	-0.00034476	0.78542	0.00072921	928.4254435396277	27.265	0.88451	26.912	26.554	27.439	-0.35254					28	16	2	0	0	0	0.010834	1	9839	9839		111.29	53.816	1	19970000			390	2817	286	286	368	368					-0.048070948526969914
AEAEPPSEV	9	Unmodified	_AEAEPPSEV_					0	0	0		ENST00000513654.5_1_4:122731225-122735207:+|nuORF;nc|ENSG00000123737|Q06265-3|EXOSC9;nc|ENSG00000123737|Q06265-4|EXOSC9;ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9	ENST00000513654.5_1_4:122731225-122735207:+|nuORF	ENST00000513654.5_1_4:122731225-122735207:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	928.4262084960938	1	928.425818	927.418542	1.0062	0.00093415	-0.20283	-0.00018832	0.80334	0.00074584	928.425596138377	27.211	0.781	27.042	26.703	27.484	-0.16933					27	14	2	0	0	0	0.016701	1	9746	9746		99.799	35.563	1	8606200			391	2817	286	286	369	369					-0.048070948526969914
AEAEQMAKKA	10	Unmodified	_AEAEQMAKKA_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MSMS	HCT116MG_D190212_S2	2	538.7742309570312	2	538.773874	1075.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.988	1	17.631	17.131	18.131	-0.35647								0	0	0	0.14477	1	6155	6155		73.196	21.566	1				392	3471	287	287	370	370					-0.001551086423887682
AEAEQMAKKA	10	Unmodified	_AEAEQMAKKA_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.773681640625	2	538.773874	1075.53319	0.3435	0.00018507	0.26881	0.00014483	0.61231	0.00032989	538.7739580715623	16.75	0.20816	16.834	16.704	16.912	0.084467					5	3	2	0	0	0	0.084931	1	5596	5596		77.049	40.542	1	3915200			393	3471	287	287	371	371					-0.001551086423887682
AEAERAREEA	10	Unmodified	_AEAERAREEA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	566.2734985351562	2	566.273084	1130.53161	0.30372	0.00017199	-0.25603	-0.00014498	0.047697	2.701E-05	566.273307361384	14.873	0.2605	14.554	14.453	14.714	-0.31952					6	4	2	0	0	0	0.52513	1	4919	4919		33.445	3.6043	1	933290			394	5492	288	288	372	372					-0.02843026406799254
AEAERKAAEAA	11	Unmodified	_AEAERKAAEAA_					0	0	0		ENSG00000170846|ENST00000635031|unknown;ENST00000307533.10_1_4:6675831-6676296:+|nuORF	ENSG00000170846|ENST00000635031|unknown	ENSG00000170846|ENST00000635031|unknown	MULTI-MSMS	HCT116MG_D190212_S2	2	558.7861938476562	2	558.785827	1115.5571	0.24467	0.00013672	0.14073	7.8639E-05	0.38541	0.00021536	558.7858280376329	15.216	0.3651	14.889	14.758	15.123	-0.32684					11	6	3	0	0	0	1.3724E-05	1	5049	5049		172.26	68.842	1	12259000			395	5162	289	289	373	373					0.003944481156167967
AEAERLDVKA	10	Unmodified	_AEAERLDVKA_					0	0	0		ENST00000561380.1_1_14:103805131-103805697:+|nuORF;ENSG00000100664|ENST00000216554|EIF5	ENST00000561380.1_1_14:103805131-103805697:+|nuORF	ENST00000561380.1_1_14:103805131-103805697:+|nuORF	MSMS	HCT116MG_D190212_S3	3	551.2984008789062	2	551.29857	1100.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.455	1	25.349	24.849	25.849	-0.10618								0	0	0	0.63876	1	9088	9088		53.317	24.235	1				396	1724	290	290	374	374					0.03631922638055585
AEAERLDVKA	10	Unmodified	_AEAERLDVKA_					0	0	0		ENST00000561380.1_1_14:103805131-103805697:+|nuORF;ENSG00000100664|ENST00000216554|EIF5	ENST00000561380.1_1_14:103805131-103805697:+|nuORF	ENST00000561380.1_1_14:103805131-103805697:+|nuORF	MSMS	HCT116MG_D190212_S4	4	551.2985229492188	2	551.29857	1100.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.709	1	25.419	24.919	25.919	-0.29022								0	0	0	0.88111	1	9124	9124		26.021	4.4306	1				397	1724	290	290	375	375					0.03631922638055585
AEAESAQTRVA	11	Unmodified	_AEAESAQTRVA_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	566.7832641601562	2	566.783284	1131.55202	0.30172	0.00017101	0.11451	6.4904E-05	0.41623	0.00023591	566.7831846183064	18.48	0.15617	18.48	18.402	18.558	0					4	2	2	0	0	0	0.13358	1	6378	6378		83.278	37.578	1	4734400			398	1981	291	291	376	376					-0.008498557469692969
AEAESAQTRVA	11	Unmodified	_AEAESAQTRVA_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	566.7835083007812	2	566.783284	1131.55202	0.24519	0.00013897	0.26141	0.00014817	0.50661	0.00028714	566.7833749526817	18.971	0.31315	18.601	18.471	18.784	-0.3695					13	5	3	0	0	0	0.004122	1	6573	6573		142.92	60.39	1	39952000			399	1981	291	291	377	377					-0.008498557469692969
AEAESAQTRVA	11	Unmodified	_AEAESAQTRVA_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	566.7833251953125	2	566.783284	1131.55202	0.35998	0.00020403	0.041798	2.3691E-05	0.40178	0.00022772	566.78331810221	18.154	0.41668	18.231	18.101	18.518	0.076334					13	7	3	0	0	0	3.9535E-10	1	6153	6153		203.78	130.81	1	22247000			400	1981	291	291	378	378					-0.008498557469692969
AEAESAQTRVA	11	Unmodified	_AEAESAQTRVA_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	566.7835693359375	2	566.783284	1131.55202	0.32991	0.00018699	0.31376	0.00017784	0.64368	0.00036482	566.783285028898	18.458	0.312	18.278	18.147	18.459	-0.18052					11	5	3	0	0	0	2.9679E-05	1	6198	6198		164.85	100.89	1	6455900			401	1981	291	291	379	379					-0.008498557469692969
AEAESMYQ	8	Unmodified	_AEAESMYQ_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	928.9140014648438	1	928.371674	927.364398	1.207	0.0011206	-0.47476	-0.00044075	0.73229	0.00067984	928.3713868802938	26.153	0.31096	25.792	25.662	25.972	-0.36164					9	5	2	0	0	0	0.054052	3	9490	9453;9490;9504		118.89	51.551	1	29458000		+	402	558;541	292	292	380;381;382	381					-0.10219010275920937
AEAESMYQI	9	Oxidation (M)	_AEAESM(Oxidation (M))YQI_		AEAESM(1)YQI		AEAESM(130)YQI	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	529.2291259765625	2	529.228965	1056.44338	0.41574	0.00022002	0.16403	8.6807E-05	0.57977	0.00030683	529.2290166779895	36.067	0.89288	36.067	35.682	36.574	0					42	16	4	0	0	0	0.0057285	1	13356	13356		131.27	69.91	1	149170000		+	403	558;541	293	293	383	383		10			-0.08258783041628703
AEAESMYQI	9	Oxidation (M)	_AEAESM(Oxidation (M))YQI_		AEAESM(1)YQI		AEAESM(110)YQI	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	1057.4510498046875	1	1057.45065	1056.44338	0.87628	0.00092662	-0.22162	-0.00023435	0.65466	0.00069227	1057.4505192613133	35.928	0.57913	35.928	35.733	36.312	0					28	10	4	0	0	0	0.012168	1	13361	13361		108	36.863	1	45736000		+	404	558;541	293	293	384	384		10			-0.08258783041628703
AEAESMYQI	9	Oxidation (M)	_AEAESM(Oxidation (M))YQI_		AEAESM(1)YQI		AEAESM(130)YQI	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2296142578125	2	529.228965	1056.44338	0.76584	0.0004053	0.11087	5.8678E-05	0.87671	0.00046398	529.2289781614393	36.121	1.2392	35.993	35.555	36.794	-0.12799					61	23	4	0	0	0	0.0057285	3	13415	13404;13415;13651		131.27	69.91	1	750120000		+	405	558;541	293	293	385;386;387	386		10			-0.08258783041628703
AEAESMYQI	9	Oxidation (M)	_AEAESM(Oxidation (M))YQI_		AEAESM(1)YQI		AEAESM(110)YQI	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	1057.450927734375	1	1057.45065	1056.44338	0.9547	0.0010096	-0.13692	-0.00014479	0.81778	0.00086476	1057.4506216348293	36.106	0.77602	35.978	35.658	36.434	-0.12799					43	14	4	0	0	0	0.012168	1	13435	13435		108	46.64	1	390290000		+	406	558;541	293	293	388	388		10			-0.08258783041628703
AEAESMYQI	9	Oxidation (M)	_AEAESM(Oxidation (M))YQI_		AEAESM(1)YQI		AEAESM(140)YQI	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	529.22900390625	2	529.228965	1056.44338	0.11988	6.3442E-05	0.18852	9.9773E-05	0.3084	0.00016321	529.2291299761694	36.315	1.2482	36.015	35.626	36.874	-0.30042					73	23	5	0	0	0	0.0048275	2	13331	13331;13562		139.14	77.781	1	512850000		+	407	558;541	293	293	389;390	389		10			-0.08258783041628703
AEAESMYQI	9	Oxidation (M)	_AEAESM(Oxidation (M))YQI_		AEAESM(1)YQI		AEAESM(100)YQI	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	1057.45068359375	1	1057.45065	1056.44338	0.29777	0.00031488	0.27171	0.00028732	0.56948	0.0006022	1057.4509717708136	36.161	0.936	35.86	35.574	36.51	-0.30042					52	17	5	0	0	0	0.01405	2	13332	13332;13570		103.35	33.004	1	145600000		+	408	558;541	293	293	391;392	391		10			-0.08258783041628703
AEAESMYQI	9	Oxidation (M)	_AEAESM(Oxidation (M))YQI_		AEAESM(1)YQI		AEAESM(140)YQI	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S4	4	529.2291259765625	2	529.228965	1056.44338	0.591	0.00031278	-0.23469	-0.0001242	0.35631	0.00018857	529.2288280537113	36.226	1.1464	35.84	35.623	36.769	-0.38558					70	22	5	0	0	0	0.0048275	2	13231	13231;13458		139.14	77.781	1	259370000		+	409	558;541	293	293	393;394	393		10			-0.08258783041628703
AEAESMYQI	9	Oxidation (M)	_AEAESM(Oxidation (M))YQI_		AEAESM(1)YQI		AEAESM(110)YQI	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S4	4	1057.4515380859375	1	1057.45065	1056.44338	0.73179	0.00077384	-0.24126	-0.00025513	0.49053	0.00051871	1057.450495833526	36.388	0.76128	36.003	35.673	36.434	-0.38558					41	14	4	0	0	0	0.010834	2	13233	13233;13462		111.29	40.153	1	64452000		+	410	558;541	293	293	395;396	395		10			-0.08258783041628703
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	1041.45654296875	1	1041.45574	1040.44846	0.7777	0.00080994	-0.18086	-0.00018836	0.59684	0.00062158	1041.4557460412893	43.186	0.46857	43.186	42.951	43.42	0					27	8	5	0	0	0	0.027492	1	16288	16288		88.904	36.635	1	543410000		+	411	558;541	293	294	397	397					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	521.2318725585938	2	521.231507	1040.44846	0.34184	0.00017818	0.18814	9.8063E-05	0.52998	0.00027624	521.2315634204367	43.185	0.46857	43.185	42.951	43.42	0					28	8	5	0	0	0	0.0066233	1	16289	16289		123.45	64.772	1	420320000		+	412	558;541	293	294	398	398					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	1041.4564208984375	1	1041.45574	1040.44846	0.43979	0.00045803	0.018687	1.9461E-05	0.45848	0.00047749	1041.4559357181658	43.057	1.0805	42.984	42.789	43.87	-0.073372					74	20	6	0	0	0	0.027492	4	16309	16298;16309;16431;16540		88.904	36.635	1	2557500000		+	413	558;541	293	294	399;400;401;402	400					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	521.231689453125	2	521.231507	1040.44846	0.0025363	1.322E-06	0.33746	0.0001759	0.34	0.00017722	521.2316900983511	43.093	1.2342	43.019	42.789	44.024	-0.073376					71	23	5	0	0	0	0.010834	2	16310	16310;16541		111.29	49.93	1	1725399999.9999998		+	414	558;541	293	294	403;404	403					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	521.2317504882812	2	521.231507	1040.44846	0.36546	0.00019049	-0.16594	-8.6494E-05	0.19952	0.000104	521.231568931093	43.416	1.3114	43.111	42.918	44.229	-0.30472					82	25	6	0	0	0	0.010834	2	16159	16159;16389		111.29	49.93	1	1383100000		+	415	558;541	293	294	405;406	405					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	1041.4569091796875	1	1041.45574	1040.44846	0.61162	0.00063697	-0.2063	-0.00021485	0.40532	0.00042212	1041.4557955996368	43.364	1.2596	43.059	42.918	44.178	-0.30472					78	24	5	0	0	0	0.027492	2	16161	16161;16391		88.904	36.635	1	1364100000		+	416	558;541	293	294	407;408	407					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S4	4	521.2332153320312	2	521.231507	1040.44846	0.30464	0.00015879	0.031901	1.6628E-05	0.33654	0.00017542	521.2315831235113	43.512	0.8341	43.138	42.944	43.778	-0.37433					63	19	6	0	0	0	0.071351	2	15945	15945;16188		64.236	30.134	1	621210000		+	417	558;541	293	294	409;410	409					-0.07014479179019872
AEAESMYQI	9	Unmodified	_AEAESMYQI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S4	4	1041.4564208984375	1	1041.45574	1040.44846	0.58221	0.00060635	0.017146	1.7856E-05	0.59936	0.0006242	1041.4558419280872	43.51	0.81887	43.136	42.959	43.778	-0.37433					55	18	5	0	0	0	0.042978	2	15954	15954;16187		78.149	28.216	1	414150000		+	418	558;541	293	294	411;412	411					-0.07014479179019872
AEAESMYQIKY	11	Unmodified	_AEAESMYQIKY_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-SECPEP	HCT116MG_D190212_S2	2	667.3458862304688	2	666.810653	1331.60675	0.5539	0.00036935	0.83034	0.00055368	1.3842	0.00092303	666.8112225819858	40.484	0.25868	40.415	40.261	40.519	-0.069622					7	4	2	0	0	0	0.29428	1	15274	15274		20.415	15.118	1	13570000		+	419	558;541	294	295	413	413					-0.04578604990592794
AEAESRAEAA	10	Unmodified	_AEAESRAEAA_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	HCT116MG_D190212_S2	2	502.73565673828125	2	502.735803	1003.45705	0.33512	0.00016847	-1.0586	-0.00053217	-0.72344	-0.0003637	502.73504642502826	15.789	0.26111	15.454	15.271	15.533	-0.33451					7	4	2	0	0	0	0.42108	1	5297	5297		40.725	11.643	1	3758800			420	910	295	296	414	414					-0.04453789218189286
AEAESRAEAAR	11	Unmodified	_AEAESRAEAAR_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	HCT116MG_D190212_S2	2	580.7863159179688	2	580.786358	1159.55816	0.3241	0.00018823	-0.059281	-3.443E-05	0.26482	0.0001538	580.7863198235236	14.992	0.2084	14.667	14.5	14.708	-0.32474					5	3	2	0	0	0	0.72218	1	4965	4965		13.615	0	1	1134500			421	910	296	297	415	415					-0.01523337515482126
AEAESTSMSK	10	Unmodified	_AEAESTSMSK_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	HCT116MG_D190212_S2	2	520.731689453125	2	520.731871	1039.44919	0.32763	0.00017061	-0.78502	-0.00040878	-0.45739	-0.00023818	520.7314480155698	17.6	0.20877	17.245	17.129	17.338	-0.35448					5	3	2	0	0	0	0.76143	1	6013	6013		15.248	15.248	1	7316300	+		422	14024	297	298	416	416					-0.06895684529968094
AEAETAKATP	10	Unmodified	_AEAETAKATP_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MULTI-MSMS	HCT116MG_D190212_S1	1	494.7511291503906	2	494.750921	987.48729	0.52642	0.00026045	2.0518	0.0010151	2.5783	0.0012756	494.75078343161147	17.253	0.41726	17.253	16.994	17.411	0					12	7	3	0	0	0	0.014951	1	5861	5861		132.13	70.533	1	5288000			423	1245	298	299	417	417					-0.006954305530030069
AEAETAKATP	10	Unmodified	_AEAETAKATP_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	494.751220703125	2	494.750921	987.48729	0.3251	0.00016084	0.68993	0.00034134	1.015	0.00050219	494.7508134709483	17.693	0.62694	17.336	16.97	17.597	-0.35647					28	11	4	0	0	0	0.25492	1	6130	6130		34.932	5.8505	1	33895000			424	1245	298	299	418	418					-0.006954305530030069
AEAETAKATP	10	Unmodified	_AEAETAKATP_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MULTI-MSMS	HCT116MG_D190212_S3	3	494.75128173828125	2	494.750921	987.48729	0.14213	7.0318E-05	1.7738	0.0008776	1.9159	0.00094792	494.7509488401373	16.774	0.52033	16.858	16.548	17.068	0.084467					20	9	3	0	0	0	0.028788	1	5567	5567		104.48	48.982	1	5994800			425	1245	298	299	419	419					-0.006954305530030069
AEAFGKIVA	9	Unmodified	_AEAFGKIVA_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S1	1	453.2576904296875	2	453.258185	904.501818	-0.43099	-0.00019535	-0.14358	-6.508E-05	-0.57458	-0.00026043	453.25801174347737	38.67	0.3117	38.67	38.488	38.8	0					13	5	3	0	0	0	0.012596	1	14469	14469		106.94	58.594	1	83774000			426	3098	299	300	420	420					0.04574686385797122
AEAFGKIVA	9	Unmodified	_AEAFGKIVA_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S2	2	453.258056640625	2	453.258185	904.501818	0.034425	1.5604E-05	0.28924	0.0001311	0.32366	0.0001467	453.258212823102	38.709	0.52702	38.624	38.382	38.909	-0.084618					26	9	4	0	0	0	0.0201	1	14526	14526		96.367	48.021	1	672970000			427	3098	299	300	421	421					0.04574686385797122
AEAFGKIVA	9	Unmodified	_AEAFGKIVA_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S2	2	905.5092163085938	1	905.509094	904.501818	0.66557	0.00060268	0.24042	0.0002177	0.90599	0.00082038	905.5090728550928	38.675	0.36896	38.591	38.437	38.806	-0.084618					14	6	3	0	0	0	0.030039	1	14532	14532		86.332	42.474	1	115080000			428	3098	299	300	422	422					0.04574686385797122
AEAFGKIVA	9	Unmodified	_AEAFGKIVA_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S3	3	453.2581787109375	2	453.258185	904.501818	0.122	5.5297E-05	0.096496	4.3738E-05	0.21849	9.9035E-05	453.25815315607684	38.94	0.52253	38.639	38.456	38.979	-0.30137					25	9	4	0	0	0	0.0201	1	14422	14422		96.367	48.021	1	255990000			429	3098	299	300	423	423					0.04574686385797122
AEAFGKIVA	9	Unmodified	_AEAFGKIVA_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S3	3	905.5097045898438	1	905.509094	904.501818	0.61519	0.00055706	0.12935	0.00011713	0.74455	0.00067419	905.5091402453621	38.94	0.36373	38.639	38.456	38.82	-0.30137					12	6	3	0	0	0	0.061422	1	14446	14446		69.105	32.978	1	25683000			430	3098	299	300	424	424					0.04574686385797122
AEAFGKIVA	9	Unmodified	_AEAFGKIVA_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S4	4	453.25762939453125	2	453.258185	904.501818	0.27958	0.00012672	-0.092739	-4.2035E-05	0.18684	8.4688E-05	453.25804335474527	39.045	0.43748	38.665	38.49	38.928	-0.38055					24	9	4	0	0	0	0.0201	1	14317	14317		96.367	48.021	1	88932000			431	3098	299	300	425	425					0.04574686385797122
AEAFGKIVA	9	Unmodified	_AEAFGKIVA_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S4	4	905.510498046875	1	905.509094	904.501818	0.68378	0.00061917	0.20907	0.00018932	0.89285	0.00080848	905.5090401801274	39.059	0.30925	38.679	38.54	38.849	-0.38055					10	6	2	0	0	0	0.0201	1	14342	14342		96.367	52.508	1	7860000			432	3098	299	300	426	426					0.04574686385797122
AEAFLRQQQA	10	Unmodified	_AEAFLRQQQA_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	HCT116MG_D190212_S3	3	581.3042602539062	2	581.304187	1160.59382	0.36564	0.00021255	-0.27213	-0.00015819	0.093514	5.436E-05	581.3041557989295	30.735	0.28069	30.474	30.324	30.604	-0.26071					10	5	3	0	0	0	0.053614	1	11205	11205		84.522	48.016	1	18445000			433	4797	300	301	427	427					0.019947447322010703
AEAFLRQQQA	10	Unmodified	_AEAFLRQQQA_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	HCT116MG_D190212_S4	4	581.8058471679688	2	581.304187	1160.59382	0.15392	8.9477E-05	0.073573	4.2769E-05	0.2275	0.00013225	581.303989513183	30.851	0.2453	30.487	30.371	30.616	-0.36416					10	4	3	0	0	0	0.040924	1	11183	11183		93.938	51.983	1	8955000			434	4797	300	301	428	428					0.019947447322010703
AEAGALPAAA	10	Unmodified	_AEAGALPAAA_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	HCT116MG_D190212_S2	2	841.4420776367188	1	841.441409	840.434132	0.49437	0.00041599	0.08501	7.1531E-05	0.57938	0.00048752	841.4411870763599	30.527	0.25643	30.242	30.13	30.387	-0.28453					7	4	2	0	0	0	0.037761	1	11258	11258		96.285	18.135	1	13455000			435	1468	301	302	429	429					0.007532364549888371
AEAGALPAAA	10	Unmodified	_AEAGALPAAA_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	HCT116MG_D190212_S3	3	841.4417724609375	1	841.441409	840.434132	0.66638	0.00056072	-0.48733	-0.00041006	0.17905	0.00015066	841.4413198304976	30.631	0.22355	30.382	30.288	30.511	-0.24946					7	5	2	0	0	0	0.052604	1	11189	11189		85.272	26.593	1	7004300			436	1468	301	302	430	430					0.007532364549888371
AEAGANMIV	9	Unmodified	_AEAGANMIV_					0	0	0		nc|ENSG00000197713|Q96AT9-5|RPE;nc|ENSG00000197713|Q96AT9-3|RPE;nc|ENSG00000197713|Q96AT9-2|RPE;ENSG00000197713|ENST00000359429|RPE	nc|ENSG00000197713|Q96AT9-5|RPE	nc|ENSG00000197713|Q96AT9-5|RPE	MULTI-MSMS	HCT116MG_D190212_S2	2	875.4288330078125	1	875.429129	874.421853	0.78164	0.00068427	0.056345	4.9326E-05	0.83798	0.0007336	875.4292587481392	41.075	0.25884	41.006	40.83	41.089	-0.068329					9	4	3	0	0	0	0.031089	1	15505	15505		85.272	17.928	1	30292000			437	6167	302	303	431	431					-0.020381232796921722
AEAGANMIV	9	Unmodified	_AEAGANMIV_					0	0	0		nc|ENSG00000197713|Q96AT9-5|RPE;nc|ENSG00000197713|Q96AT9-3|RPE;nc|ENSG00000197713|Q96AT9-2|RPE;ENSG00000197713|ENST00000359429|RPE	nc|ENSG00000197713|Q96AT9-5|RPE	nc|ENSG00000197713|Q96AT9-5|RPE	MULTI-MSMS	HCT116MG_D190212_S3	3	875.4302368164062	1	875.429129	874.421853	0.79175	0.00069312	0.46568	0.00040767	1.2574	0.0011008	875.4292243056908	41.273	0.26081	40.971	40.788	41.049	-0.30185					7	4	2	0	0	0	0.031089	1	15355	15355		85.272	17.928	1	4793400			438	6167	302	303	432	432					-0.020381232796921722
AEAGASLQAY	10	Unmodified	_AEAGASLQAY_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MSMS	HCT116MG_D190212_S2	2	490.7381591796875	2	490.737814	979.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.813	1	29.512	29.012	30.012	-0.30095								0	0	0	0.45592	1	10936	10936		49.933	2.1843	1				439	1704	303	304	433	433					-0.02947699724472841
AEAGDAVVA	9	Unmodified	_AEAGDAVVA_					0	0	0		ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	MULTI-MSMS	HCT116MG_D190212_S3	3	802.3941650390625	1	802.394124	801.386848	0.93661	0.00075153	-0.12318	-9.884E-05	0.81343	0.00065269	802.3939310824653	25.892	0.31286	25.764	25.546	25.859	-0.12795					10	5	2	0	0	0	0.065014	1	9239	9239		67.344	16.489	1	6355900			440	3755	304	305	434	434					-0.02179042815998855
AEAGDAVVA	9	Unmodified	_AEAGDAVVA_					0	0	0		ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	MULTI-MSMS	HCT116MG_D190212_S4	4	802.395751953125	1	802.394124	801.386848	0.91194	0.00073173	-0.23396	-0.00018773	0.67798	0.00054401	802.3941319853742	25.936	0.3644	25.646	25.516	25.88	-0.29022					10	6	2	0	0	0	0.065014	1	9246	9246		67.344	16.489	1	3638600			441	3755	304	305	435	435					-0.02179042815998855
AEAGGMHTV	9	Unmodified	_AEAGGMHTV_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MSMS	HCT116MG_D190212_S1	1	436.7003173828125	2	436.700177	871.385802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.882	1	22.882	22.382	23.382	0								0	0	0	0.0065761	1	8122	8122		112.59	27.236	1				442	5588	305	306	436	436					-0.05503580456536383
AEAGGMHTV	9	Unmodified	_AEAGGMHTV_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-MSMS	HCT116MG_D190212_S2	2	436.7001953125	2	436.700177	871.385802	-0.0051755	-2.2601E-06	0.38271	0.00016713	0.37753	0.00016487	436.70018651808886	23.345	0.41503	22.96	22.778	23.193	-0.3852					17	7	3	0	0	0	0.016134	1	8313	8313		100.37	25.949	1	82866000			443	5588	305	306	437	437					-0.05503580456536383
AEAGGMHTV	9	Unmodified	_AEAGGMHTV_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-MSMS	HCT116MG_D190212_S2	2	872.3934326171875	1	872.393078	871.385802	0.79722	0.00069549	-0.079782	-6.9602E-05	0.71744	0.00062589	872.3927737123031	23.345	0.25909	22.96	22.83	23.089	-0.3852					8	4	2	0	0	0	0.0034906	1	8323	8323		158.2	62.092	1	31430000			444	5588	305	306	438	438					-0.05503580456536383
AEAGGMHTV	9	Unmodified	_AEAGGMHTV_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-MSMS	HCT116MG_D190212_S3	3	436.70025634765625	2	436.700177	871.385802	0.093778	4.0953E-05	0.25644	0.00011199	0.35022	0.00015294	436.70018258050413	22.743	0.66459	22.724	22.543	23.208	-0.018871					22	12	3	0	0	0	0.007119	1	7998	7998		120.45	46.028	1	65858000			445	5588	305	306	439	439					-0.05503580456536383
AEAGGMHTV	9	Unmodified	_AEAGGMHTV_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-MSMS	HCT116MG_D190212_S3	3	872.3945922851562	1	872.393078	871.385802	0.74172	0.00064707	0.24031	0.00020965	0.98204	0.00085672	872.393354040947	22.744	0.24819	22.725	22.595	22.844	-0.018869					7	4	2	0	0	0	0.0051486	1	8017	8017		136.33	54.443	1	8016500			446	5588	305	306	440	440					-0.05503580456536383
AEAGGMHTV	9	Unmodified	_AEAGGMHTV_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-MSMS	HCT116MG_D190212_S4	4	436.70013427734375	2	436.700177	871.385802	0.065785	2.8728E-05	-0.028869	-1.2607E-05	0.036916	1.6121E-05	436.700114917911	23.074	0.31321	22.836	22.655	22.968	-0.23758					9	5	2	0	0	0	0.023611	1	8064	8064		92.822	18.399	1	11457000			447	5588	305	306	441	441					-0.05503580456536383
AEAGGMHTV	9	Oxidation (M)	_AEAGGM(Oxidation (M))HTV_		AEAGGM(1)HTV		AEAGGM(50)HTV	0	0	1		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-SECPEP	HCT116MG_D190212_S1	1	443.9483642578125	2	444.697635	887.380716	0.13283	5.9067E-05	-0.052619	-2.3399E-05	0.080207	3.5668E-05	444.6976323414808	16.863	0.20851	16.863	16.733	16.942	0					5	3	2	0	0	0	0.062754	1	5713	5713		49.933	19.296	1	2609200			448	5588	305	307	442	442		120			-0.06747884319145214
AEAGGMHTV	9	Oxidation (M)	_AEAGGM(Oxidation (M))HTV_		AEAGGM(1)HTV		AEAGGM(78)HTV	0	0	1		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MSMS	HCT116MG_D190212_S2	2	444.697509765625	2	444.697635	887.380716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.32	1	16.971	16.471	17.471	-0.34933								0	0	0	0.034673	1	5887	5887		78.149	20.678	1				449	5588	305	307	443	443		120			-0.06747884319145214
AEAGGSPEV	9	Unmodified	_AEAGGSPEV_					0	0	0		ENST00000320805.8_2_16:28977785-28977899:+|nuORF;chr4:456368-472575|425|12.28|0.0|20.23|-|2|TE_info:AluSx,AluSx_dup24773,Alu,SINE,acceptor,-,456051,456368|None,ZNF721|1;ENST00000376259.6_1_1:12267561-12267786:+|nuORF;ENST00000593704.1_1_19:35835757-35836128:+|nuORF;ENST00000371586.6_2_1:52816616-52816928:-|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF;ENST00000592624.1_1_19:1242319-1242811:+|nuORF	ENST00000320805.8_2_16:28977785-28977899:+|nuORF	ENST00000320805.8_2_16:28977785-28977899:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	816.3743896484375	1	816.373389	815.366112	1.1164	0.00091142	0.10983	8.9665E-05	1.2263	0.0010011	816.3733961888021	24.112	0.25877	23.731	23.562	23.821	-0.38081					7	4	2	0	0	0	0.007119	1	8634	8634		120.45	24.166	1	12752000			450	455	306	308	444	444					-0.04895633195656046
AEAGGSPEV	9	Unmodified	_AEAGGSPEV_					0	0	0		ENST00000320805.8_2_16:28977785-28977899:+|nuORF;chr4:456368-472575|425|12.28|0.0|20.23|-|2|TE_info:AluSx,AluSx_dup24773,Alu,SINE,acceptor,-,456051,456368|None,ZNF721|1;ENST00000376259.6_1_1:12267561-12267786:+|nuORF;ENST00000593704.1_1_19:35835757-35836128:+|nuORF;ENST00000371586.6_2_1:52816616-52816928:-|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF;ENST00000592624.1_1_19:1242319-1242811:+|nuORF	ENST00000320805.8_2_16:28977785-28977899:+|nuORF	ENST00000320805.8_2_16:28977785-28977899:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	816.3739624023438	1	816.373389	815.366112	0.95011	0.00077565	-0.049489	-4.0402E-05	0.90063	0.00073525	816.3732490541117	23.774	0.46899	23.712	23.478	23.947	-0.061449					13	8	2	0	0	0	0.0060607	1	8416	8416		128.37	20.368	1	11601000			451	455	306	308	445	445					-0.04895633195656046
AEAGGSPEV	9	Unmodified	_AEAGGSPEV_					0	0	0		ENST00000320805.8_2_16:28977785-28977899:+|nuORF;chr4:456368-472575|425|12.28|0.0|20.23|-|2|TE_info:AluSx,AluSx_dup24773,Alu,SINE,acceptor,-,456051,456368|None,ZNF721|1;ENST00000376259.6_1_1:12267561-12267786:+|nuORF;ENST00000593704.1_1_19:35835757-35836128:+|nuORF;ENST00000371586.6_2_1:52816616-52816928:-|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF;ENST00000592624.1_1_19:1242319-1242811:+|nuORF	ENST00000320805.8_2_16:28977785-28977899:+|nuORF	ENST00000320805.8_2_16:28977785-28977899:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	816.375732421875	1	816.373389	815.366112	0.94945	0.0007751	-0.066703	-5.4454E-05	0.88274	0.00072065	816.3735412861168	23.999	0.36395	23.741	23.521	23.885	-0.25816					10	6	2	0	0	0	0.007119	1	8429	8429		120.45	20.079	1	3642300			452	455	306	308	446	446					-0.04895633195656046
AEAGGSRLLP	10	Unmodified	_AEAGGSRLLP_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	HCT116MG_D190212_S2	2	485.769287109375	2	485.769448	969.524344	0.2938	0.00014272	-0.18185	-8.8338E-05	0.11195	5.4381E-05	485.76910849437104	36.536	0.25874	36.421	36.292	36.55	-0.11478					6	4	2	0	0	0	0.51403	1	13704	13704		34.222	1.436	1	11291000			453	4443	307	309	447	447					0.03836285783427229
AEAGGSRLLP	10	Unmodified	_AEAGGSRLLP_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	HCT116MG_D190212_S3	3	485.7692565917969	2	485.769448	969.524344	0.069483	3.3753E-05	-0.064445	-3.1305E-05	0.0050383	2.4475E-06	485.7693335525752	36.695	0.31224	36.394	36.197	36.509	-0.30113					8	5	2	0	0	0	0.42108	1	13588	13588		40.725	11.643	1	3793200			454	4443	307	309	448	448					0.03836285783427229
AEAGGSRLLP	10	Unmodified	_AEAGGSRLLP_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	485.769448	969.524344	0.2938	0.00014272	-0.18185	-8.8338E-05	0.11195	5.4381E-05	485.76910849437104	36.536	0.25874	36.421	36.292	36.55	-0.11478	0.0136	-6.8235E-05	NaN	40.725	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11291000			455	4443	307	309							0.03836285783427229
AEAGGYLHTA	10	Unmodified	_AEAGGYLHTA_					0	0	0		nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-MSMS	HCT116MG_D190212_S2	2	495.237548828125	2	495.237981	988.461409	0.34883	0.00017275	-0.33368	-0.00016525	0.015146	7.501E-06	495.23778634263294	28.254	0.56904	27.924	27.512	28.081	-0.32987					17	10	3	0	0	0	0.015946	1	10317	10317		129.77	69.698	1	31170000			456	2882	308	310	449	449					-0.033282800046322336
AEAGGYLHTA	10	Unmodified	_AEAGGYLHTA_					0	0	0		nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-MSMS	HCT116MG_D190212_S3	3	495.2381286621094	2	495.237981	988.461409	0.13978	6.9224E-05	0.18602	9.2126E-05	0.3258	0.00016135	495.23803065375097	28.234	0.36559	28.028	27.811	28.177	-0.20593					10	6	2	0	0	0	0.01404	1	10204	10204		134.3	74.222	1	14884000			457	2882	308	310	450	450					-0.033282800046322336
AEAGGYLHTA	10	Unmodified	_AEAGGYLHTA_					0	0	0		nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-MSMS	HCT116MG_D190212_S4	4	495.23809814453125	2	495.237981	988.461409	0.29441	0.0001458	-0.31262	-0.00015482	-0.018211	-9.0186E-06	495.23783102424477	28.406	0.26033	28.074	27.856	28.116	-0.33138					7	4	2	0	0	0	0.076419	1	10227	10227		78.728	45.942	1	5199900			458	2882	308	310	451	451					-0.033282800046322336
AEAGLSYH	8	Unmodified	_AEAGLSYH_					0	0	0		BSN|p.N1995S|1|0.17|ENSG00000164061|chr3:49655540-49655540|A/G|missense_variant	BSN|p.N1995S|1|0.17|ENSG00000164061|chr3:49655540-49655540|A/G|missense_variant	BSN|p.N1995S|1|0.17|ENSG00000164061|chr3:49655540-49655540|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	424.7032165527344	2	424.200867	846.387182	0.20634	8.7528E-05	0.38685	0.0001641	0.59319	0.00025163	424.20086585536956	25.371	0.83302	25.264	24.787	25.62	-0.10618					39	15	3	0	0	0	0.46267	1	8966	8966		44.407	17.523	1	14113000			459	283	309	311	452	452					-0.04215623096138188
AEAGNEIFCN	10	Unmodified	_AEAGNEIFCN_					0	0	0			REV__ENST00000432176.6_1_7:22984676-22984820:-|nuORF	REV__ENST00000432176.6_1_7:22984676-22984820:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2267456054688	2	534.226756	1066.43896	0.41643	0.00022247	0.26136	0.00013963	0.67779	0.00036209	534.2268162527142	47.247	0.20798	46.931	46.801	47.009	-0.31525					5	3	2	0	0	0	0.6277	1	17750	17750		26.268	0	1	6635000	+		460	15587	310	312	453	453					-0.09160247464524218
AEAGQLRAP	9	Unmodified	_AEAGQLRAP_					0	0	0		ENST00000460508.3_1_2:74730273-74730426:-|nuORF	ENST00000460508.3_1_2:74730273-74730426:-|nuORF	ENST00000460508.3_1_2:74730273-74730426:-|nuORF	MSMS	HCT116MG_D190212_S4	4	456.74884033203125	2	456.748516	911.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.314	1	27.003	26.503	27.503	-0.3114								0	0	0	0.30227	1	9772	9772		39.957	14.558	1				461	8043	311	313	454	454					0.023197300948936572
AEAGRLEM	8	Unmodified	_AEAGRLEM_					0	0	0			REV__nc|ENSG00000067842|Q16720-8|ATP2B3	REV__nc|ENSG00000067842|Q16720-8|ATP2B3	MULTI-MSMS	HCT116MG_D190212_S2	2	438.7159423828125	2	438.715827	875.417102	0.44944	0.00019718	0.78318	0.00034359	1.2326	0.00054077	438.71614984010205	46.954	0.41157	46.832	46.666	47.078	-0.12175					13	7	2	0	0	0	0.61955	1	17893	17893		30.637	5.9627	1	94326000	+		462	10733	312	314	455	455					-0.025590074224510317
AEAGRRVST	9	Unmodified	_AEAGRRVST_					0	0	0			REV__nc|ENSG00000160256|Q9NSI2-2|SLX9	REV__nc|ENSG00000160256|Q9NSI2-2|SLX9	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7566833496094	2	473.756872	945.499192	0.11675	5.5309E-05	-0.45529	-0.0002157	-0.33855	-0.00016039	473.7566492410639	15.216	0.26069	14.889	14.706	14.967	-0.32684					7	4	2	0	0	0	0.47809	1	5061	5061		18.146	2.2992	1	3645900	+		463	17181	313	315	456	456					0.024262309808477767
AEAGRSPEV	9	Unmodified	_AEAGRSPEV_					0	0	0		AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense;AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|1|1|sense;AluSp_dup42947|chr17:47950854-47951160:-|1.032795899586597|0.1918471209114514|2.43|482.0|5|2|sense;ENST00000530527.5_1_11:17308195-17312910:+|nuORF;ENST00000498576.1_1_1:11137245-11137690:-|nuORF;ENST00000595094.1_1_19:20736613-20844252:-|nuORF	AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense	AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense	MSMS	HCT116MG_D190212_S2	2	458.2305603027344	2	458.230156	914.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.356	1	20.973	20.473	21.473	-0.38288								0	0	0	0.029033	1	7512	7512		83.429	29.853	1				464	106	314	316	457	457					-0.0148856652166387
AEAGRSPEV	9	Unmodified	_AEAGRSPEV_					0	0	0		AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense;AluSx1_dup105715|chr19:17808831-17809133:-|1.057486810986726|0.069666496377167|3.92|481.0|1|1|sense;AluSp_dup42947|chr17:47950854-47951160:-|1.032795899586597|0.1918471209114514|2.43|482.0|5|2|sense;ENST00000530527.5_1_11:17308195-17312910:+|nuORF;ENST00000498576.1_1_1:11137245-11137690:-|nuORF;ENST00000595094.1_1_19:20736613-20844252:-|nuORF	AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense	AluSp_dup17171|chr6:42956085-42956345:+|2.9082291479174875|0.2092895351215914|3.8|479.0|1|1|sense	MULTI-MSMS	HCT116MG_D190212_S3	3	458.2301330566406	2	458.230156	914.445759	0.24272	0.00011122	-0.18593	-8.5197E-05	0.056792	2.6024E-05	458.2301489806464	20.55	0.31244	20.584	20.402	20.714	0.034473					10	5	3	0	0	0	0.043159	1	7127	7127		78.06	38.103	1	4324300			465	106	314	316	458	458					-0.0148856652166387
AEAGSGWRA	9	Unmodified	_AEAGSGWRA_					0	0	0		ENST00000285518.10_1_8:6565940-6566105:+|nuORF	ENST00000285518.10_1_8:6565940-6566105:+|nuORF	ENST00000285518.10_1_8:6565940-6566105:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	452.7174072265625	2	452.717216	903.419879	0.26082	0.00011808	-0.19264	-8.721E-05	0.068187	3.0869E-05	452.7171476136339	26.638	0.26006	26.489	26.359	26.619	-0.14924					7	4	2	0	0	0	0.016744	1	9590	9590		99.755	18.142	1	6943400			466	6948	315	317	459	459					-0.035694159732884145
AEAGSGWRA	9	Unmodified	_AEAGSGWRA_					0	0	0		ENST00000285518.10_1_8:6565940-6566105:+|nuORF	ENST00000285518.10_1_8:6565940-6566105:+|nuORF	ENST00000285518.10_1_8:6565940-6566105:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	452.717216	903.419879	0.085273	3.8605E-05	0.1918	8.6829E-05	0.27707	0.00012543	452.7172608050877	26.916	0.26297	26.563	26.45	26.713	-0.35254	0.037061	4.7543E-05	NaN	99.755	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11427000			467	6948	315	317							-0.035694159732884145
AEAGSPAMA	9	Unmodified	_AEAGSPAMA_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	MULTI-MSMS	HCT116MG_D190212_S3	3	804.3561401367188	1	804.35563	803.348354	0.81363	0.00065445	-0.17018	-0.00013689	0.64345	0.00051756	804.3550849826328	23.253	0.31272	23.213	23.083	23.396	-0.03968					6	5	2	0	0	0	0.031005	1	8216	8216		85.357	27.885	1	3355300			468	2686	316	318	460	460					-0.0611867172217444
AEAIGADSA	9	Unmodified	_AEAIGADSA_					0	0	0		ENST00000597415.5_2_19:49954735-49956720:-|nuORF;ENST00000599791.1_1_19:49952679-49954831:-|nuORF;nc|ENSG00000104872|Q9NWS0-2|PIH1D1;nc|ENSG00000104872|Q9NWS0-3|PIH1D1;ENST00000595074.1_1_19:49952471-49954831:-|nuORF;PIH1D1|p.Q250Sfs*6|1|0.25|ENSG00000104872|chr19:49446634-49446634|G/-|frameshift_variant;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000597415.5_2_19:49954735-49956720:-|nuORF	ENST00000597415.5_2_19:49954735-49956720:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	804.3739013671875	1	804.373389	803.366112	0.7946	0.00063915	0.044508	3.5801E-05	0.8391	0.00067495	804.3734014690189	23.445	0.20882	23.445	23.314	23.523	0					6	3	2	0	0	0	0.0090481	1	8371	8371		115.69	54.335	1	5190400			469	1960	317	319	461	461					-0.04343633195662733
AEAIGADSA	9	Unmodified	_AEAIGADSA_					0	0	0		ENST00000597415.5_2_19:49954735-49956720:-|nuORF;ENST00000599791.1_1_19:49952679-49954831:-|nuORF;nc|ENSG00000104872|Q9NWS0-2|PIH1D1;nc|ENSG00000104872|Q9NWS0-3|PIH1D1;ENST00000595074.1_1_19:49952471-49954831:-|nuORF;PIH1D1|p.Q250Sfs*6|1|0.25|ENSG00000104872|chr19:49446634-49446634|G/-|frameshift_variant;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000597415.5_2_19:49954735-49956720:-|nuORF	ENST00000597415.5_2_19:49954735-49956720:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	804.3732299804688	1	804.373389	803.366112	0.93642	0.00075323	-0.20547	-0.00016528	0.73095	0.00058796	804.3731682643898	23.749	0.51992	23.366	23.195	23.715	-0.38324					19	9	4	0	0	0	0.0034906	1	8479	8479		158.2	69.299	1	43709000			470	1960	317	319	462	462					-0.04343633195662733
AEAIGADSA	9	Unmodified	_AEAIGADSA_					0	0	0		ENST00000597415.5_2_19:49954735-49956720:-|nuORF;ENST00000599791.1_1_19:49952679-49954831:-|nuORF;nc|ENSG00000104872|Q9NWS0-2|PIH1D1;nc|ENSG00000104872|Q9NWS0-3|PIH1D1;ENST00000595074.1_1_19:49952471-49954831:-|nuORF;PIH1D1|p.Q250Sfs*6|1|0.25|ENSG00000104872|chr19:49446634-49446634|G/-|frameshift_variant;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000597415.5_2_19:49954735-49956720:-|nuORF	ENST00000597415.5_2_19:49954735-49956720:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	804.3738403320312	1	804.373389	803.366112	0.85521	0.00068791	-0.096537	-7.7652E-05	0.75867	0.00061025	804.3731778407995	23.461	0.57326	23.422	23.291	23.865	-0.03968					20	10	3	0	0	0	0.0034906	1	8287	8287		158.2	69.299	1	29597000			471	1960	317	319	463	463					-0.04343633195662733
AEAIGADSA	9	Unmodified	_AEAIGADSA_					0	0	0		ENST00000597415.5_2_19:49954735-49956720:-|nuORF;ENST00000599791.1_1_19:49952679-49954831:-|nuORF;nc|ENSG00000104872|Q9NWS0-2|PIH1D1;nc|ENSG00000104872|Q9NWS0-3|PIH1D1;ENST00000595074.1_1_19:49952471-49954831:-|nuORF;PIH1D1|p.Q250Sfs*6|1|0.25|ENSG00000104872|chr19:49446634-49446634|G/-|frameshift_variant;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000597415.5_2_19:49954735-49956720:-|nuORF	ENST00000597415.5_2_19:49954735-49956720:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	804.3740234375	1	804.373389	803.366112	0.85757	0.00068981	-0.19994	-0.00016083	0.65763	0.00052898	804.3732046101892	23.649	0.36402	23.402	23.22	23.584	-0.24775					10	6	2	0	0	0	0.0040473	1	8292	8292		149.99	68.382	1	6757300			472	1960	317	319	464	464					-0.04343633195662733
AEAIHSPQV	9	Unmodified	_AEAIHSPQV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S1	1	476.24847412109375	2	476.248349	950.482145	0.44336	0.00021115	-0.012773	-6.0833E-06	0.43059	0.00020507	476.2482853134278	28.428	0.94639	28.428	27.904	28.851	0					43	17	3	0	0	0	0.0038512	2	10472	10238;10472		152.89	91.528	1	17888000			473	1027	318	320	465;466	466					0.004923103750456903
AEAIHSPQV	9	Unmodified	_AEAIHSPQV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	476.2484130859375	2	476.248349	950.482145	0.2028	9.6583E-05	0.11732	5.5871E-05	0.32012	0.00015245	476.248274753818	28.917	0.97419	28.601	27.939	28.914	-0.31613					45	18	3	0	0	0	0.0040527	2	10649	10420;10649		149.91	87.341	1	106420000			474	1027	318	320	467;468	468					0.004923103750456903
AEAIHSPQV	9	Unmodified	_AEAIHSPQV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S3	3	476.2484130859375	2	476.248349	950.482145	0.36466	0.00017367	0.022069	1.051E-05	0.38672	0.00018418	476.2482610053047	28.842	1.2505	28.62	27.847	29.098	-0.22195					63	23	4	0	0	0	0.0034607	2	10513	10275;10513		163.04	94.955	1	43933000			475	1027	318	320	469;470	470					0.004923103750456903
AEAIHSPQV	9	Unmodified	_AEAIHSPQV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S4	4	476.2481384277344	2	476.248349	950.482145	0.48854	0.00023266	-0.19939	-9.4957E-05	0.28915	0.00013771	476.2482272741595	29.2	0.98656	28.86	28.055	29.041	-0.34059					31	18	2	0	0	0	0.0046822	1	10395	10395		140.63	84.456	1	11903000			476	1027	318	320	471	471					0.004923103750456903
AEAIIRSGA	9	Unmodified	_AEAIIRSGA_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	444.2509765625	2	444.250892	886.48723	0.2452	0.00010893	0.3019	0.00013412	0.5471	0.00024305	444.25090426847885	25.842	0.31153	25.473	25.343	25.654	-0.36914					12	5	3	0	0	0	0.0096585	1	9332	9332		114.19	7.2463	1	76377000			477	3828	319	321	472	472					0.039446142376732496
AEAIIRSGA	9	Unmodified	_AEAIIRSGA_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	887.4952392578125	1	887.494507	886.48723	0.90423	0.0008025	-0.20545	-0.00018233	0.69878	0.00062017	887.4944297642369	25.842	0.20732	25.473	25.343	25.55	-0.36914					6	3	2	0	0	0	0.0068642	1	9349	9349		121.35	14.406	1	22562000			478	3828	319	321	473	473					0.039446142376732496
AEAIIRSGA	9	Unmodified	_AEAIIRSGA_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	444.2520751953125	2	444.250892	886.48723	0.22673	0.00010072	0.55758	0.00024771	0.78431	0.00034843	444.2511000066827	25.493	0.3119	25.386	25.256	25.568	-0.10618					15	5	4	0	0	0	0.016412	1	9104	9104		100.09	0.33544	1	42319000			479	3828	319	321	474	474					0.039446142376732496
AEAIIRSGA	9	Unmodified	_AEAIIRSGA_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	887.4970703125	1	887.494507	886.48723	0.91741	0.0008142	0.17427	0.00015467	1.0917	0.00096887	887.4946825193581	25.492	0.25983	25.386	25.256	25.516	-0.10618					7	4	2	0	0	0	0.0068642	1	9117	9117		121.35	14.406	1	7578100			480	3828	319	321	475	475					0.039446142376732496
AEAIIRSGA	9	Unmodified	_AEAIIRSGA_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;CEP170|p.V1192Yfs*26|1|0.1|ENSG00000143702|chr1:243164387-243164387|T/-|frameshift_variant	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	444.24481201171875	2	444.250892	886.48723	0.35014	0.00015555	0.35217	0.00015645	0.70231	0.000312	444.25093606319876	25.73	0.26019	25.44	25.308	25.568	-0.29022					10	4	3	0	0	0	0.07468	1	9116	9116		63.227	1.6256	1	11680000			481	3828	319	321	476	476					0.039446142376732496
AEAIIRTN	8	Unmodified	_AEAIIRTN_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	HCT116MG_D190212_S1	1	444.251220703125	2	444.250892	886.48723	-0.053702	-2.3857E-05	0.83863	0.00037256	0.78493	0.0003487	444.2512006446686	25.383	0.25994	25.383	25.249	25.509	0					9	4	3	0	0	0	0.36353	1	9152	9152		53.404	3.471	1	9652400	+		482	11823	320	322	477	477					0.039446142376732496
AEAIIRTN	8	Unmodified	_AEAIIRTN_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	HCT116MG_D190212_S2	2	444.2508850097656	2	444.250892	886.48723	-0.17443	-7.7493E-05	0.53222	0.00023644	0.35778	0.00015895	444.25107779067025	30.132	0.2064	29.848	29.667	29.873	-0.28453					5	3	2	0	0	0	0.37603	1	11075	11075		52.268	0	1	25447000	+		483	11823	320	322	478	478					0.039446142376732496
AEAIIRTN	8	Unmodified	_AEAIIRTN_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	HCT116MG_D190212_S3	3	444.2515869140625	2	444.250892	886.48723	0.19499	8.6624E-05	0.41418	0.000184	0.60917	0.00027062	444.25099520125315	30.154	0.26205	29.905	29.755	30.017	-0.24946					11	4	3	0	0	0	0.21275	1	10991	10991		71.134	0	1	13989000	+		484	11823	320	322	479	479					0.039446142376732496
AEAIIRTN	8	Unmodified	_AEAIIRTN_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	HCT116MG_D190212_S4	4	444.2515563964844	2	444.250892	886.48723	0.35014	0.00015555	0.35217	0.00015645	0.70231	0.000312	444.25093606319876	25.73	0.26019	25.44	25.308	25.568	-0.29022					10	4	3	0	0	0	0.12475	1	9135	9135		89.401	4.8785	1	11680000	+		485	11823	320	322	480	480					0.039446142376732496
AEAIIRTN	8	Unmodified	_AEAIIRTN_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	444.250892	886.48723	0.19499	8.6624E-05	0.41418	0.000184	0.60917	0.00027062	444.25099520125315	30.154	0.26205	29.905	29.755	30.017	-0.24946	0.028645	-5.3737E-05	NaN	71.134	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13989000	+		486	11823	320	322							0.039446142376732496
AEAIKAWTA	9	Unmodified	_AEAIKAWTA_					0	0	0		ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	MSMS	HCT116MG_D190212_S1	1	480.7607727050781	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.981	1	36.981	36.481	37.481	0								0	0	0	0.014027	1	13802	13802		100.71	38.136	1				487	8855	321	323	481	481					0.026257848974523768
AEAIKAWTA	9	Unmodified	_AEAIKAWTA_					0	0	0		ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	480.7612609863281	2	480.761092	959.507631	0.14957	7.191E-05	-0.050445	-2.4252E-05	0.099129	4.7657E-05	480.76094093446	37.001	0.36019	36.886	36.757	37.117	-0.11478					15	6	3	0	0	0	0.01386	1	13858	13858		103.82	41.251	1	133780000			488	8855	321	323	482	482					0.026257848974523768
AEAIKAWTA	9	Unmodified	_AEAIKAWTA_					0	0	0		ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	960.5153198242188	1	960.514908	959.507631	0.57248	0.00054988	0.050279	4.8294E-05	0.62276	0.00059817	960.5145705891897	37.052	0.2067	36.937	36.808	37.014	-0.11478					7	3	3	0	0	0	0.0068642	1	13883	13883		121.35	46.417	1	32729000			489	8855	321	323	483	483					0.026257848974523768
AEAIKAWTA	9	Unmodified	_AEAIKAWTA_					0	0	0		ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	480.7611389160156	2	480.761092	959.507631	0.26164	0.00012579	-0.03002	-1.4433E-05	0.23162	0.00011135	480.7609417624743	37.204	0.41631	36.903	36.717	37.133	-0.30137					18	7	4	0	0	0	0.022505	1	13777	13777		93.938	37.761	1	55154000			490	8855	321	323	484	484					0.026257848974523768
AEAIKAWTA	9	Unmodified	_AEAIKAWTA_					0	0	0		ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	960.5147705078125	1	960.514908	959.507631	0.72721	0.00069849	-0.29698	-0.00028525	0.43023	0.00041324	960.5143681656432	37.219	0.26014	36.918	36.769	37.029	-0.30137					6	4	2	0	0	0	0.0068642	1	13797	13797		121.35	56.111	1	4575900			491	8855	321	323	485	485					0.026257848974523768
AEAIKAWTA	9	Unmodified	_AEAIKAWTA_					0	0	0		ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	480.7611389160156	2	480.761092	959.507631	0.17508	8.417E-05	0.15777	7.5848E-05	0.33284	0.00016002	480.7610439034753	37.336	0.36057	36.952	36.771	37.131	-0.3839					13	6	3	0	0	0	0.011034	2	13701	13682;13701		110.79	54.616	1	20963000			492	8855	321	323	486;487	487					0.026257848974523768
AEAILGQNA	9	Unmodified	_AEAILGQNA_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S3	3	886.464111328125	1	886.462872	885.455596	0.58072	0.00051479	-0.12999	-0.00011523	0.45074	0.00039956	886.4630573074992	34.815	0.26018	34.518	34.336	34.596	-0.29707					6	4	2	0	0	0	0.016701	1	12851	12851		99.799	21.65	1	5129200			493	3183	322	324	488	488					0.008286214837198713
AEAILGQNAA	10	Unmodified	_AEAILGQNAA_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	479.25360107421875	2	479.253631	956.49271	0.20652	9.8975E-05	0.05378	2.5774E-05	0.2603	0.00012475	479.2535803303368	34.415	0.31253	34.415	34.233	34.545	0					9	5	2	0	0	0	0.029378	1	12780	12780		103.42	55.671	1	19474000			494	3183	323	325	489	489					0.012722930294785328
AEAILGQNAA	10	Unmodified	_AEAILGQNAA_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2538757324219	2	479.253631	956.49271	0.46957	0.00022505	0.17668	8.4672E-05	0.64625	0.00030972	479.2536444557755	34.579	0.36157	34.42	34.191	34.553	-0.15948					15	6	3	0	0	0	0.025359	1	12854	12854		110.67	35.746	1	126650000			495	3183	323	325	490	490					0.012722930294785328
AEAILGQNAA	10	Unmodified	_AEAILGQNAA_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S2	2	957.5007934570312	1	957.499986	956.49271	0.8795	0.00084212	0.16039	0.00015358	1.0399	0.00099569	957.4999176268752	34.567	0.30965	34.403	34.239	34.549	-0.1635					13	5	3	0	0	0	0.027428	1	12857	12857		106.94	32.011	1	79460000			496	3183	323	325	491	491					0.012722930294785328
AEAILGQNAA	10	Unmodified	_AEAILGQNAA_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S3	3	479.2535095214844	2	479.253631	956.49271	0.0047972	2.2991E-06	0.062199	2.9809E-05	0.066996	3.2108E-05	479.25360840547273	34.711	0.57082	34.414	34.233	34.803	-0.29707					28	10	4	0	0	0	0.021264	1	12767	12767		118.07	42.308	1	173730000			497	3183	323	325	492	492					0.012722930294785328
AEAILGQNAA	10	Unmodified	_AEAILGQNAA_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S3	3	957.4998779296875	1	957.499986	956.49271	0.50988	0.00048821	-0.037493	-3.59E-05	0.47238	0.00045231	957.499795928397	34.711	0.46766	34.414	34.233	34.7	-0.29707					21	8	3	0	0	0	0.021264	1	12779	12779		118.07	43.139	1	60335000			498	3183	323	325	493	493					0.012722930294785328
AEAILGQNAA	10	Unmodified	_AEAILGQNAA_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S4	4	479.253662109375	2	479.253631	956.49271	0.31688	0.00015187	-0.10825	-5.1881E-05	0.20863	9.9986E-05	479.25348685955316	34.803	0.51331	34.417	34.236	34.75	-0.38606					22	9	3	0	0	0	0.027428	1	12703	12703		106.94	41.705	1	74934000			499	3183	323	325	494	494					0.012722930294785328
AEAILGQNAA	10	Unmodified	_AEAILGQNAA_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S4	4	957.5006103515625	1	957.499986	956.49271	0.509	0.00048736	0.1119	0.00010715	0.6209	0.00059451	957.4999915095656	34.803	0.40943	34.417	34.236	34.646	-0.38606					16	7	3	0	0	0	0.025359	1	12724	12724		110.67	33.85	1	25339000			500	3183	323	325	495	495					0.012722930294785328
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	HCT116MG_D190212_S1	1	927.56298828125	1	927.562192	926.554916	0.84538	0.00078414	-0.068493	-6.3532E-05	0.77689	0.00072061	927.5619400543454	43.082	0.2607	43.082	42.951	43.212	0					10	4	3	0	0	0	0.012596	2	16276	16221;16276		106.94	41.705	1	29498000			501	4761	324	326	496;497	497					0.08870064168456793
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	HCT116MG_D190212_S1	1	464.28466796875	2	464.284734	926.554916	0.10708	4.9717E-05	0.052841	2.4533E-05	0.15992	7.425E-05	464.284699010844	43.082	0.36479	43.082	42.9	43.264	0					19	6	4	0	0	0	0.064006	1	16267	16267		67.838	5.2655	1	251320000			502	4761	324	326	498	498					0.08870064168456793
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	HCT116MG_D190212_S2	2	464.2847595214844	2	464.284734	926.554916	-0.032235	-1.4966E-05	0.43256	0.00020083	0.40032	0.00018586	464.28486594978375	43.042	0.61786	42.968	42.84	43.458	-0.073376					29	11	4	0	0	0	0.045679	1	16311	16311		76.825	4.9025	1	1163300000			503	4761	324	326	499	499					0.08870064168456793
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	HCT116MG_D190212_S2	2	927.5629272460938	1	927.562192	926.554916	0.78897	0.00073182	0.13091	0.00012143	0.91989	0.00085325	927.5623138035545	43.042	0.25661	42.968	42.84	43.097	-0.073376					10	4	3	0	0	0	0.012596	1	16312	16312		106.94	41.705	1	186150000			504	4761	324	326	500	500					0.08870064168456793
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	HCT116MG_D190212_S3	3	927.5625610351562	1	927.562192	926.554916	0.99602	0.00092387	-0.046943	-4.3543E-05	0.94908	0.00088033	927.5620404799688	43.364	0.19201	43.059	42.945	43.137	-0.30472					6	3	2	0	0	0	0.012596	1	16186	16186		106.94	41.705	1	22652000			505	4761	324	326	501	501					0.08870064168456793
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	HCT116MG_D190212_S3	3	464.2846984863281	2	464.284734	926.554916	0.40367	0.00018742	-0.15831	-7.35E-05	0.24536	0.00011392	464.28457595788063	43.364	0.60614	43.059	42.896	43.502	-0.30472					27	12	4	0	0	0	0.22528	1	16221	16221		38.615	14.594	1	234350000			506	4761	324	326	502	502					0.08870064168456793
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	HCT116MG_D190212_S4	4	464.2851257324219	2	464.284734	926.554916	-0.027797	-1.2906E-05	0.36743	0.00017059	0.33963	0.00015769	464.2847942233817	43.512	0.40445	43.138	42.959	43.364	-0.37433					22	10	3	0	0	0	0.05892	1	15959	15959		70.332	1.2271	1	53613000			507	4761	324	326	503	503					0.08870064168456793
AEAIRILAA	9	Unmodified	_AEAIRILAA_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	HCT116MG_D190212_S4	4	927.56396484375	1	927.562192	926.554916	0.73023	0.00067733	0.48774	0.00045241	1.218	0.0011297	927.562763732478	43.512	0.14561	43.138	43.018	43.163	-0.37433					5	3	2	0	0	0	0.012596	1	16005	16005		106.94	41.705	1	4096100			508	4761	324	326	504	504					0.08870064168456793
AEAKEYVIKA	10	Unmodified	_AEAKEYVIKA_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	HCT116MG_D190212_S2	2	561.3138427734375	2	561.313689	1120.61282	0.42709	0.00023973	0.084405	4.7378E-05	0.51149	0.00028711	561.3137243402724	28.178	0.25909	27.848	27.667	27.926	-0.32987					7	4	2	0	0	0	0.016327	1	10274	10274		128.87	46.954	1	42902000			509	2195	325	327	505	505					0.05734281303239186
AEAKEYVIKA	10	Unmodified	_AEAKEYVIKA_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MATCH	HCT116MG_D190212_S1	1		2	561.313689	1120.61282	0.40209	0.0002257	0.22692	0.00012737	0.62901	0.00035307	561.3137165696854	27.703	0.15581	27.703	27.592	27.748	0	-0.099077	0.00014939	NaN	128.87	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4273800			510	2195	325	327							0.05734281303239186
AEAKEYVIKA	10	Unmodified	_AEAKEYVIKA_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MATCH	HCT116MG_D190212_S3	3		2	561.313689	1120.61282	0.33802	0.00018973	0.042901	2.4081E-05	0.38092	0.00021381	561.3136353848363	28.043	0.15602	27.855	27.725	27.881	-0.18847	0.052998	-5.7192E-05	NaN	128.87	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2925900			511	2195	325	327							0.05734281303239186
AEAKFFTES	9	Unmodified	_AEAKFFTES_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2478637695312	2	515.248015	1028.48148	0.21069	0.00010856	0.23778	0.00012251	0.44847	0.00023107	515.247996290177	36.685	0.31242	36.685	36.522	36.835	0					11	5	3	0	0	0	0.0060369	1	13671	13671		128.57	70.851	1	40513000			512	18180;6123	326	328	506	506					-0.03162529064661612
AEAKFFTES	9	Unmodified	_AEAKFFTES_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2479858398438	2	515.248015	1028.48148	0.26627	0.00013719	0.36103	0.00018602	0.6273	0.00032321	515.2481098129979	36.743	0.36083	36.628	36.447	36.808	-0.11478					24	6	5	0	0	0	0.0060369	1	13731	13731		128.57	70.851	1	252430000			513	18180;6123	326	328	507	507					-0.03162529064661612
AEAKFFTES	9	Unmodified	_AEAKFFTES_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1029.489013671875	1	1029.48875	1028.48148	0.44344	0.00045652	0.35329	0.00036371	0.79673	0.00082023	1029.4889715217957	36.743	0.30989	36.628	36.447	36.757	-0.11478					10	5	3	0	0	0	0.011034	1	13760	13760		110.79	59.163	1	30733000			514	18180;6123	326	328	508	508					-0.03162529064661612
AEAKFFTES	9	Unmodified	_AEAKFFTES_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2537231445312	2	515.248015	1028.48148	0.19107	9.8446E-05	0.15739	8.1093E-05	0.34845	0.00017954	515.2479933571474	36.889	0.52013	36.588	36.457	36.977	-0.30113					24	9	4	0	0	0	0.30117	2	13643	13643;13766		30.637	11.198	1	94959000			515	18180;6123	326	328	509;510	509					-0.03162529064661612
AEAKFFTES	9	Unmodified	_AEAKFFTES_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	ENSG00000197157|ENST00000354725|SND1;SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1029.4892578125	1	1029.48875	1028.48148	0.54304	0.00055905	-0.18946	-0.00019505	0.35358	0.00036401	1029.4886376792865	36.94	0.25987	36.639	36.457	36.717	-0.30113					7	4	2	0	0	0	0.051033	1	13670	13670		74.2	30.427	1	5509400			516	18180;6123	326	328	511	511					-0.03162529064661612
AEAKGRRDP	9	Unmodified	_AEAKGRRDP_					0	0	0		ENST00000405858.5_1_7:6746266-6746485:-|nuORF	ENST00000405858.5_1_7:6746266-6746485:-|nuORF	ENST00000405858.5_1_7:6746266-6746485:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	500.27032470703125	2	500.270147	998.525741	0.34016	0.00017017	0.5001	0.00025019	0.84026	0.00042036	500.27049614272386	16.646	0.31214	16.731	16.601	16.913	0.085424					7	5	2	0	0	0	0.51829	1	5575	5575		15.847	4.2069	1	1475600			517	7713	327	329	512	512					0.026419198721782777
AEAKNAITP	9	Unmodified	_AEAKNAITP_					0	0	0		tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	tr|U7T5N2|U7T5N2_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00023PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	457.75091552734375	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.218	1	20.218	19.718	20.718	0								0	0	0	0.59795	1	7054	7054		24.021	0.87215	1				518	18633	328	330	513	513					0.026691945178072274
AEAKQIVRKL	10	Unmodified	_AEAKQIVRKL_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MSMS	HCT116MG_D190212_S3	3	385.9115295410156	3	385.91179	1154.71354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.004	1	23.943	23.443	24.443	-0.061449								0	0	0	0.91667	1	8503	8503		12.175	5.073	1				519	2898	329	331	514	514					0.1423735807675257
AEAKSERLP	9	Unmodified	_AEAKSERLP_					0	0	0		KNCN|p.A121Lfs*111|2|0.32|ENSG00000162456|chr1:46547744-46547744|C/-|frameshift_variant	KNCN|p.A121Lfs*111|2|0.32|ENSG00000162456|chr1:46547744-46547744|C/-|frameshift_variant	KNCN|p.A121Lfs*111|2|0.32|ENSG00000162456|chr1:46547744-46547744|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7751770019531	2	500.774731	999.534909	0.39916	0.00019989	-0.12941	-6.4804E-05	0.26975	0.00013508	500.7747207568302	20.704	0.63334	20.325	19.813	20.446	-0.37949					13	11	2	0	0	0	0.16306	1	7242	7242		45.7	5.4604	1	4557700			520	9270	330	332	515	515					0.03512268437862076
AEAKTHWLGA	10	Unmodified	_AEAKTHWLGA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S1	1	361.8573913574219	3	361.857574	1082.55089	-0.18628	-6.7406E-05	-0.084706	-3.0652E-05	-0.27098	-9.8057E-05	361.8575367241239	31.987	0.36503	31.987	31.805	32.17	0					13	6	3	0	0	0	0.18147	1	11776	11776		47.053	22.096	1	29052000			521	5225	331	333	516	516					0.012919746747684258
AEAKTHWLGA	10	Unmodified	_AEAKTHWLGA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S1	1	542.28369140625	2	542.282723	1082.55089	0.42181	0.00022874	0.20578	0.00011159	0.62759	0.00034033	542.2827134670695	31.971	0.46891	31.971	31.805	32.274	0					19	8	4	0	0	0	0.013379	1	11777	11777		135.86	68.025	1	49473000			522	5225	331	333	517	517					0.012919746747684258
AEAKTHWLGA	10	Unmodified	_AEAKTHWLGA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2840576171875	2	542.282723	1082.55089	0.49507	0.00026847	0.17161	9.306E-05	0.66668	0.00036153	542.2827418499816	32.199	0.67602	31.969	31.735	32.411	-0.23009					36	12	4	0	0	0	0.025294	1	11880	11880		110.79	61.266	1	172000000			523	5225	331	333	518	518					0.012919746747684258
AEAKTHWLGA	10	Unmodified	_AEAKTHWLGA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S2	2	361.85736083984375	3	361.857574	1082.55089	-0.16729	-6.0537E-05	0.37819	0.00013685	0.2109	7.6315E-05	361.85760758982326	32.197	0.51944	31.967	31.735	32.254	-0.23009					24	9	4	0	0	0	0.15757	1	11886	11886		48.561	20.38	1	55421000			524	5225	331	333	519	519					0.012919746747684258
AEAKTHWLGA	10	Unmodified	_AEAKTHWLGA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MSMS	HCT116MG_D190212_S3	3	542.2826538085938	2	542.282723	1082.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.37	1	32.091	31.591	32.591	-0.27841								0	0	0	0.052334	1	11861	11861		96.936	45.306	1				525	5225	331	333	520	520					0.012919746747684258
AEAKTHWLGAA	11	Unmodified	_AEAKTHWLGAA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S1	1	577.8017578125	2	577.80128	1153.58801	0.28524	0.00016481	0.15949	9.2153E-05	0.44472	0.00025696	577.8013516172548	32.15	0.41659	32.15	31.961	32.378	0					21	7	4	0	0	0	0.086814	1	11842	11842		118.21	72.47	1	78370000			526	5225	332	334	521	521					0.017356462205270873
AEAKTHWLGAA	11	Unmodified	_AEAKTHWLGAA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S1	1	385.870849609375	3	385.536612	1153.58801	-0.30103	-0.00011606	0.18123	6.9869E-05	-0.1198	-4.6188E-05	385.5367290924112	32.144	0.26045	32.144	31.961	32.222	0					10	4	3	0	0	0	0.69585	1	11856	11856		23.34	4.9999	1	21212000			527	5225	332	334	522	522					0.017356462205270873
AEAKTHWLGAA	11	Unmodified	_AEAKTHWLGAA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S2	2	577.8016357421875	2	577.80128	1153.58801	0.27465	0.00015869	0.018006	1.0404E-05	0.29265	0.0001691	577.8013084373215	32.459	0.52098	32.229	32.046	32.567	-0.23009					34	9	5	0	0	0	0.086814	1	11999	11999		118.21	76.254	1	356630000			528	5225	332	334	523	523					0.017356462205270873
AEAKTHWLGAA	11	Unmodified	_AEAKTHWLGAA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S2	2	385.53662109375	3	385.536612	1153.58801	-0.16643	-6.4164E-05	0.061954	2.3885E-05	-0.10447	-4.0278E-05	385.53658298649214	32.458	0.46863	32.228	32.046	32.515	-0.23009					17	8	3	0	0	0	0.58633	1	12015	12015		36.955	8.7736	1	96087000			529	5225	332	334	524	524					0.017356462205270873
AEAKTHWLGAA	11	Unmodified	_AEAKTHWLGAA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S2	2	1154.5965576171875	1	1154.59528	1153.58801	0.32319	0.00037315	0.75464	0.0008713	1.0778	0.0012445	1154.5960985340341	32.458	0.20819	32.228	32.098	32.306	-0.23009					6	3	2	0	0	0	0.11044	1	12039	12039		112.04	112.04	1	17077000			530	5225	332	334	525	525					0.017356462205270873
AEAKTHWLGAA	11	Unmodified	_AEAKTHWLGAA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S3	3	577.80126953125	2	577.80128	1153.58801	0.49803	0.00028776	-0.0073885	-4.2691E-06	0.49064	0.00028349	577.801214593914	32.507	0.46883	32.228	31.994	32.463	-0.27841					23	8	4	0	0	0	0.038067	1	11917	11917		142.92	107.99	1	49712000			531	5225	332	334	526	526					0.017356462205270873
AEAKTHWLGAA	11	Unmodified	_AEAKTHWLGAA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S3	3	385.5365905761719	3	385.536612	1153.58801	-0.01864	-7.1864E-06	-0.1747	-6.7353E-05	-0.19334	-7.454E-05	385.5365816883909	32.507	0.31245	32.228	32.098	32.41	-0.27841					11	5	3	0	0	0	0.66462	1	11922	11922		28.271	0.08925	1	22477000			532	5225	332	334	527	527					0.017356462205270873
AEAKTHWLGAA	11	Unmodified	_AEAKTHWLGAA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S4	4	577.8016357421875	2	577.80128	1153.58801	0.36009	0.00020806	0.08359	4.8299E-05	0.44368	0.00025636	577.8011645717875	32.666	0.41528	32.287	32.157	32.572	-0.37924					10	7	2	0	0	0	0.032353	1	11912	11912		135.72	89.979	1	11416000			533	5225	332	334	528	528					0.017356462205270873
AEAKTHWLGAA	11	Unmodified	_AEAKTHWLGAA_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	HCT116MG_D190212_S4	4	385.53656005859375	3	385.536612	1153.58801	0.071425	2.7537E-05	0.010105	3.8959E-06	0.08153	3.1433E-05	385.5366087788505	32.666	0.25964	32.287	32.157	32.416	-0.37924					7	4	2	0	0	0	0.72068	1	11932	11932		14.171	7.9364	1	6315400			534	5225	332	334	529	529					0.017356462205270873
AEAKVAKVSP	10	Unmodified	_AEAKVAKVSP_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	HCT116MG_D190212_S3	3	500.240966796875	2	500.295299	998.576045	0.40857	0.00020441	-0.042228	-2.1127E-05	0.36634	0.00018328	500.2953052022864	19.925	0.2606	19.973	19.791	20.051	0.048107					7	4	2	0	0	0	0.2916	1	6793	6793		17.113	5.4726	1	3217700			535	1991	333	335	530	530					0.07670029477333173
AEALASTVTL	10	Unmodified	_AEALASTVTL_					0	0	0		ENST00000513432.5_1_18:13059017-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-2|CEP192;CEP192|p.N1674Kfs*6|1|0.25|ENSG00000101639|chr18:13069142-13069143|-/A|frameshift_variant;CEP192|p.K1891Nfs*8|1|0.19|ENSG00000101639|chr18:13087068-13087068|A/-|frameshift_variant;nc|ENSG00000101639|Q8TEP8-1|CEP192;CEP192|p.R2464Kfs*5|1|0.13|ENSG00000101639|chr18:13116476-13116477|-/AAATCCA|frameshift_variant;ENSG00000101639|ENST00000506447|CEP192	ENST00000513432.5_1_18:13059017-13124766:+|nuORF	ENST00000513432.5_1_18:13059017-13124766:+|nuORF	MSMS	HCT116MG_D190212_S4	4	488.2700500488281	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.678	1	34.293	33.793	34.793	-0.38558								0	0	0	0.92607	1	12672	12672		10.074	0	1				536	406	334	336	531	531					0.0401433048649551
AEALATHIL	9	Unmodified	_AEALATHIL_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.C1327Lfs*13|1|0.05|ENSG00000023516|chr13:42302724-42302725|-/CTTCTACTTTATAATC|frameshift_variant;AKAP11|p.F1607Sfs*48|1|0.11|ENSG00000023516|chr13:42303562-42303562|T/-|frameshift_variant;AKAP11|p.H1753Ifs*3|1|0.11|ENSG00000023516|chr13:42308589-42308589|T/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MSMS	HCT116MG_D190212_S2	2	469.7690734863281	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.904	1	43.825	43.325	44.325	-0.078373								0	0	0	0.1044	1	16660	16660		54.774	0	1				537	948	335	337	532	532					0.052020714145328384
AEALERKER	9	Unmodified	_AEALERKER_					0	0	0			REV__SIX1|p.G162S|1|0.36|ENSG00000126778|chr14:60648706-60648706|C/T|missense_variant	REV__SIX1|p.G162S|1|0.36|ENSG00000126778|chr14:60648706-60648706|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	368.2060852050781	3	367.871883	1100.59382	-0.35116	-0.00012918	0.29493	0.0001085	-0.056228	-2.0685E-05	367.8719813405529	11.746	0.21921	11.456	11.36	11.579	-0.28953					12	8	2	0	0	0	0.72796	1	3801	3801		3.3196	0	1	384900	+		538	11845	336	338	533	533					0.047547447321903746
AEALEYRQ	8	Unmodified	_AEALEYRQ_					0	0	0			REV__ENSG00000159459|ENST00000290650|UBR1	REV__ENSG00000159459|ENST00000290650|UBR1	MSMS	HCT116MG_D190212_S4	4	490.2450866699219	2	490.245806	978.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.865	1	34.479	33.979	34.979	-0.38606								0	0	0	0.28827	1	12747	12747		56.177	14.337	1		+		539	12805	337	339	534	534					-0.013039934875678227
AEALGSTEA	9	Unmodified	_AEALGSTEA_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S1	1	848.4002075195312	1	848.399603	847.392327	0.73918	0.00062712	-0.036945	-3.1344E-05	0.70223	0.00059577	848.39948668938	24.961	0.41917	24.961	24.778	25.197	0					15	7	3	0	0	0	0.023938	1	8959	8959		92.491	21.358	1	33961000			540	6638	338	340	535	535					-0.03747364024172839
AEALGSTEA	9	Unmodified	_AEALGSTEA_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S2	2	848.4000854492188	1	848.399603	847.392327	0.77955	0.00066137	0.030903	2.6218E-05	0.81045	0.00068759	848.3995303281887	25.283	0.72869	24.907	24.712	25.44	-0.37521					28	13	4	0	0	0	0.010834	1	9093	9093		111.29	18.796	1	260420000			541	6638	338	340	536	536					-0.03747364024172839
AEALGSTEA	9	Unmodified	_AEALGSTEA_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S3	3	848.3994140625	1	848.399603	847.392327	0.81469	0.00069118	-0.14414	-0.00012229	0.67055	0.0005689	848.3993840760196	25.079	0.93717	24.973	24.735	25.672	-0.10618					38	17	4	0	0	0	0.023938	1	8920	8920		92.491	21.358	1	179940000			542	6638	338	340	537	537					-0.03747364024172839
AEALHSGL	8	Unmodified	_AEALHSGL_					0	0	0		ENST00000563680.1_1_16:30004959-30006553:-|nuORF;ENST00000563053.1_1_16:30004823-30006050:-|nuORF;nc|ENSG00000149929|Q9BW71-3|HIRIP3	ENST00000563680.1_1_16:30004959-30006553:-|nuORF	ENST00000563680.1_1_16:30004959-30006553:-|nuORF	MSMS	HCT116MG_D190212_S4	4	399.155029296875	2	399.211235	796.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.462	1	36.076	35.576	36.576	-0.38558								0	0	0	0.8837	1	13344	13344		14.582	4.3983	1				543	8832	339	341	538	538					0.0015696728352168066
AEALIERGQA	10	Unmodified	_AEALIERGQA_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;VPS52|p.E618V|1|0.19|ENSG00000223501|chr6:33251913-33251913|T/A|missense_variant	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2855834960938	2	529.285463	1056.55637	0.45832	0.00024258	0.39019	0.00020652	0.84851	0.0004491	529.2859311363335	23.551	0.26053	23.512	23.343	23.604	-0.03968					6	4	2	0	0	0	0.55624	1	8334	8334		31.268	5.869	1	2843300			544	6478	340	342	539	539					0.030356534665770596
AEALIKHKP	9	Unmodified	_AEALIKHKP_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S1	1	503.8062438964844	2	503.805834	1005.59712	0.28464	0.0001434	0.24563	0.00012375	0.53027	0.00026715	503.80587899126397	18.897	0.67742	18.897	18.454	19.131	0					36	12	4	0	0	0	0.037825	1	6424	6424		80.676	40.726	1	115720000			545	3958	341	343	540	540					0.09454039576849027
AEALIKHKP	9	Unmodified	_AEALIKHKP_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S2	2	503.80584716796875	2	503.805834	1005.59712	0.45496	0.00022921	-0.26525	-0.00013363	0.18971	9.5578E-05	503.8057834385539	19.752	1.3574	19.377	18.83	20.188	-0.37503					65	25	5	0	0	0	0.026272	3	6731	6731;6945;6982		90.135	54.408	1	1218100000			546	3958	341	343	541;542;543	541					0.09454039576849027
AEALIKHKP	9	Unmodified	_AEALIKHKP_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S2	2	1006.6052856445312	1	1006.60439	1005.59712	0.58244	0.00058629	-0.017131	-1.7245E-05	0.56531	0.00056905	1006.6043167019028	19.752	0.46716	19.377	19.039	19.506	-0.37503					18	8	3	0	0	0	0.0201	1	6835	6835		96.367	52.508	1	44393000			547	3958	341	343	544	544					0.09454039576849027
AEALIKHKP	9	Unmodified	_AEALIKHKP_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S3	3	503.80560302734375	2	503.805834	1005.59712	0.3314	0.00016696	0.11731	5.9102E-05	0.44871	0.00022606	503.8058136004967	18.311	0.88492	18.387	17.893	18.778	0.076334					50	16	5	0	0	0	0.22528	2	6087	6087;6327		38.615	25.572	1	133620000			548	3958	341	343	545;546	545					0.09454039576849027
AEALIKHKP	9	Unmodified	_AEALIKHKP_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S4	4	503.80615234375	2	503.805834	1005.59712	0.21135	0.00010648	0.29219	0.00014721	0.50354	0.00025369	503.80587790698564	18.822	0.72778	18.641	18.251	18.979	-0.18052					34	13	4	0	0	0	0.037825	2	6263	6263;6384		80.676	54.408	1	29745000			549	3958	341	343	547;548	547					0.09454039576849027
AEALITHN	8	Unmodified	_AEALITHN_					0	0	0			REV__tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1	REV__tr|U7SU81|U7SU81_FUSNUAlpha-1,4glucanphosphorylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01135PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	434.7296142578125	2	434.729792	867.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.874	1	34.488	33.988	34.988	-0.38606								0	0	0	0.84187	1	12751	12751		19.257	2.3147	1		+		550	17823	342	344	549	549					0.006006388292803422
AEALKAPQS	9	Unmodified	_AEALKAPQS_					0	0	0			REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF	REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF	MSMS	HCT116MG_D190212_S4	4	457.7507629394531	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.299	1	20.097	19.597	20.597	-0.20133								0	0	0	0.24841	1	6940	6940		43.858	3.6191	1		+		551	11212	343	345	550	550					0.026691945178072274
AEALKARKEE	10	Unmodified	_AEALKARKEE_					0	0	0			REV__ENSG00000198168|ENST00000354193|SVIP	REV__ENSG00000198168|ENST00000354193|SVIP	MSMS	HCT116MG_D190212_S3	3	572.6331176757812	2	572.81967	1143.62479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.115	1	22.115	21.615	22.615	0.00074577								0	0	0	0.91279	1	7742	7742		13.042	0.80181	1		+		552	14111	344	346	551	551					0.058718980464163906
AEALPKQSV	9	Unmodified	_AEALPKQSV_					0	0	0		ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3	ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MSMS	HCT116MG_D190212_S2	2	471.7666320800781	2	471.766374	941.518196	0.27212	0.00012838	-0.13971	-6.5908E-05	0.13242	6.2469E-05	471.76659827086706	25.807	0.31096	25.438	25.291	25.602	-0.36914					7	5	2	0	0	0	0.1935	1	9340	9340		41.956	7.5538	1	9517400			553	3921	345	347	552	552					0.04509767551905952
AEALREVSA	9	Unmodified	_AEALREVSA_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	HCT116MG_D190212_S1	1	473.253662109375	2	473.253631	944.49271	0.19286	9.1274E-05	-0.34951	-0.00016541	-0.15664	-7.4132E-05	473.2534302948964	26.944	0.15607	26.944	26.865	27.022	0					4	2	2	0	0	0	0.12465	1	9784	9784		53.317	7.6171	1	9571500			554	3984	346	348	553	553					0.018242930294718462
AEALREVSA	9	Unmodified	_AEALREVSA_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2537536621094	2	473.253631	944.49271	0.51942	0.00024582	-0.3151	-0.00014912	0.20432	9.6696E-05	473.25339224651174	27.346	0.52102	26.994	26.659	27.18	-0.35254					20	9	4	0	0	0	0.060947	3	9947	9927;9947;9970		69.338	11.536	1	41939000			555	3984	346	348	554;555;556	555					0.018242930294718462
AEALREVSA	9	Unmodified	_AEALREVSA_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2532043457031	2	473.253631	944.49271	0.23834	0.00011279	-0.40491	-0.00019163	-0.16657	-7.883E-05	473.25326095501237	27.211	0.46857	27.042	26.859	27.328	-0.16933					18	8	3	0	0	0	0.060947	2	9799	9794;9799		69.338	9.5443	1	24654000			556	3984	346	348	557;558	558					0.018242930294718462
AEALREVSA	9	Unmodified	_AEALREVSA_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;tr|U7SK73|U7SK73_FUSNUV-typeATPsynthasebetachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpBPE=3SV=1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	473.253631	944.49271	0.40975	0.00019392	-1.0809	-0.00051153	-0.67113	-0.00031761	473.25285209591004	27.397	0.36346	27.085	26.845	27.209	-0.31248	0.068612	-0.00067567	NaN	69.338	10	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4802300			557	3984	346	348							0.018242930294718462
AEALRKRS	8	Unmodified	_AEALRKRS_					0	0	0			REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	465.77728271484375	2	465.777608	929.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.025	1	43.025	42.525	43.525	0								0	0	0	0.8837	1	16244	16244		7.9102	0	1		+		558	13181	347	349	559	559					0.07307411740180214
AEALWTEQL	9	Unmodified	_AEALWTEQL_					0	0	0			REV__ENST00000460438.5_1_7:13998579-14028701:-|nuORF	REV__ENST00000460438.5_1_7:13998579-14028701:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.2808837890625	2	530.769114	1059.52368	0.80748	0.00042858	4.1112	0.0021821	4.9187	0.0026107	530.7720519627627	36.043	0.15534	35.915	35.812	35.967	-0.12799					4	2	2	0	0	0	0.22781	1	13445	13445		16.942	2.104	1	3373200	+		559	10488	348	350	560	560					-0.0037055365630749293
AEAMAAQHTA	10	Unmodified	_AEAMAAQHTA_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7296142578125	2	500.729466	999.444379	0.12661	6.3399E-05	0.14413	7.2172E-05	0.27075	0.00013557	500.729577390217	18.345	0.3136	17.982	17.851	18.165	-0.36325					12	5	3	0	0	0	0.031798	1	6308	6308		100.71	33.628	1	18356000			560	3482	349	351	561	561					-0.055365238820854756
AEAMAAQHTA	10	Unmodified	_AEAMAAQHTA_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	MSMS	HCT116MG_D190212_S3	3	500.7445983886719	2	500.729466	999.444379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.412	1	17.494	16.994	17.994	0.081358								0	0	0	0.80906	1	5848	5848		27.629	11.48	1				561	3482	349	351	562	562					-0.055365238820854756
AEAMAAQHTA	10	Unmodified	_AEAMAAQHTA_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	MSMS	HCT116MG_D190212_S3	3	500.7296142578125	2	500.729466	999.444379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.457	1	17.539	17.039	18.039	0.081358								0	0	0	0.050408	1	5866	5866		100.71	43.601	1				562	3482	349	351	563	563					-0.055365238820854756
AEAMALGREA	10	Unmodified	_AEAMALGREA_					0	0	0		POLD1|p.V933Cfs*21|1|0.29|ENSG00000062822|chr19:50415796-50415797|-/A|frameshift_variant;ENSG00000062822|ENST00000440232|POLD1	POLD1|p.V933Cfs*21|1|0.29|ENSG00000062822|chr19:50415796-50415797|-/A|frameshift_variant	POLD1|p.V933Cfs*21|1|0.29|ENSG00000062822|chr19:50415796-50415797|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	509.75274658203125	2	509.752941	1017.49133	0.037831	1.9285E-05	0.04383	2.2342E-05	0.081661	4.1627E-05	509.7528867834105	30.389	0.25661	30.105	29.976	30.233	-0.28453					6	4	2	0	0	0	0.034465	1	11194	11194		98.73	29.625	1	50477000			563	1125	350	352	564	564					-0.016716643309337087
AEAMALGREA	10	Unmodified	_AEAMALGREA_					0	0	0		POLD1|p.V933Cfs*21|1|0.29|ENSG00000062822|chr19:50415796-50415797|-/A|frameshift_variant;ENSG00000062822|ENST00000440232|POLD1	POLD1|p.V933Cfs*21|1|0.29|ENSG00000062822|chr19:50415796-50415797|-/A|frameshift_variant	POLD1|p.V933Cfs*21|1|0.29|ENSG00000062822|chr19:50415796-50415797|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	509.75341796875	2	509.752941	1017.49133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.705	1	30.341	29.841	30.841	-0.36416								0	0	0	0.89486	1	11114	11114		16.566	0.71869	1				564	1125	350	352	565	565					-0.016716643309337087
AEANFRIYP	9	Unmodified	_AEANFRIYP_					0	0	0		ENSG00000122592|ENST00000242159|HOXA7	ENSG00000122592|ENST00000242159|HOXA7	ENSG00000122592|ENST00000242159|HOXA7	MULTI-MSMS	HCT116MG_D190212_S2	2	540.7772216796875	2	540.777274	1079.53999	0.77629	0.0004198	-0.65331	-0.00035329	0.12299	6.6508E-05	540.776755227706	43.747	0.41148	43.668	43.402	43.813	-0.078373					18	7	3	0	0	0	0.040372	1	16590	16590		96.367	46.812	1	40069000			565	2772	351	353	566	566					0.003405723004561878
AEANFRIYP	9	Unmodified	_AEANFRIYP_					0	0	0		ENSG00000122592|ENST00000242159|HOXA7	ENSG00000122592|ENST00000242159|HOXA7	ENSG00000122592|ENST00000242159|HOXA7	MULTI-MSMS	HCT116MG_D190212_S3	3	540.783447265625	2	540.777274	1079.53999	0.58699	0.00031743	-0.50084	-0.00027084	0.086152	4.6589E-05	540.7770277790063	44.041	0.3646	43.735	43.5	43.865	-0.30616					10	6	2	0	0	0	0.32403	1	16406	16406		36.506	9.6225	1	7248800			566	2772	351	353	567	567					0.003405723004561878
AEANFRIYP	9	Unmodified	_AEANFRIYP_					0	0	0		ENSG00000122592|ENST00000242159|HOXA7	ENSG00000122592|ENST00000242159|HOXA7	ENSG00000122592|ENST00000242159|HOXA7	MSMS	HCT116MG_D190212_S4	4	540.7774047851562	2	540.777274	1079.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.221	1	43.847	43.347	44.347	-0.37373								0	0	0	0.58014	1	16284	16284		32.786	16.637	1				567	2772	351	353	568	568					0.003405723004561878
AEANHFIDL	9	Unmodified	_AEANHFIDL_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2538452148438	2	515.253631	1028.49271	0.45014	0.00023194	0.28111	0.00014484	0.73125	0.00037678	515.2537500606787	46.933	0.41444	46.933	46.751	47.165	0					25	7	5	0	0	0	0.00446	1	17821	17821		143.91	72.776	1	779270000			568	3976	352	354	569	569					-0.020397069705268223
AEANHFIDL	9	Unmodified	_AEANHFIDL_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	HCT116MG_D190212_S1	1	1029.5955810546875	1	1029.49999	1028.49271	0.91228	0.00093919	0.2994	0.00030823	1.2117	0.0012474	1029.5005380236778	46.939	0.25902	46.939	46.803	47.062	0					10	4	3	0	0	0	0.0064416	2	17833	17833;17843		125.04	79.017	1	26589000			569	3976	352	354	570;571	570					-0.020397069705268223
AEANHFIDL	9	Unmodified	_AEANHFIDL_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	HCT116MG_D190212_S2	2	1029.500732421875	1	1029.49999	1028.49271	0.76203	0.00078451	0.51375	0.00052891	1.2758	0.0013134	1029.5004318182368	46.917	0.56661	46.795	46.615	47.182	-0.12175					26	10	3	0	0	0	0.0064416	1	17874	17874		125.04	72.769	1	268390000			570	3976	352	354	572	572					-0.020397069705268223
AEANHFIDL	9	Unmodified	_AEANHFIDL_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2537841796875	2	515.253631	1028.49271	0.58593	0.0003019	0.28288	0.00014575	0.86881	0.00044766	515.2537851689045	46.917	1.0316	46.795	46.563	47.595	-0.12175					62	19	5	0	0	0	0.0068642	1	18010	18010		121.35	54.002	1	3491099999.9999995			571	3976	352	354	573	573					-0.020397069705268223
AEANHFIDL	9	Unmodified	_AEANHFIDL_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2537841796875	2	515.253631	1028.49271	0.15819	8.1507E-05	0.19631	0.00010115	0.3545	0.00018266	515.2537305065777	47.247	0.92223	46.931	46.697	47.619	-0.31525					47	18	5	0	0	0	0.0029864	1	17717	17717		181.69	100.08	1	849930000			572	3976	352	354	574	574					-0.020397069705268223
AEANHFIDL	9	Unmodified	_AEANHFIDL_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	HCT116MG_D190212_S3	3	1029.5010986328125	1	1029.49999	1028.49271	0.51191	0.00052701	0.29568	0.00030441	0.80759	0.00083142	1029.500262610716	47.247	0.25854	46.931	46.801	47.06	-0.31525					10	4	3	0	0	0	0.0064416	1	17739	17739		125.04	72.769	1	19554000			573	3976	352	354	575	575					-0.020397069705268223
AEANHFIDL	9	Unmodified	_AEANHFIDL_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	HCT116MG_D190212_S4	4	515.2543334960938	2	515.253631	1028.49271	0.4061	0.00020924	-0.098935	-5.0977E-05	0.30716	0.00015827	515.2534809181062	47.316	0.37801	46.946	46.744	47.122	-0.37038					28	11	4	0	0	0	0.0035136	1	17485	17485		168.54	86.924	1	195570000			574	3976	352	354	576	576					-0.020397069705268223
AEANIEVGKP	10	Unmodified	_AEANIEVGKP_					0	0	0			REV__nc|ENSG00000170624|Q92629-3|SGCD	REV__nc|ENSG00000170624|Q92629-3|SGCD	MSMS	HCT116MG_D190212_S2	2	514.7384643554688	2	514.274564	1026.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.768	1	26.416	25.916	26.916	-0.35254								0	0	0	0.8981	1	9699	9699		16.149	0.30192	1		+		575	13311	353	355	577	577					0.022368487180074226
AEANLVGREA	10	Unmodified	_AEANLVGREA_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;PPP1R9A|p.F369*|1|0.04|ENSG00000158528|chr7:94911219-94911244|TCACCTCTCCTGATGCTTCTGCATCC/-|frameshift_variant;PPP1R9A|p.K495Nfs*3|2|0.28|ENSG00000158528|chr7:95111344-95111344|A/-|frameshift_variant;PPP1R9A|p.K592Nfs*5|1|0.07|ENSG00000158528|chr7:95198366-95198366|A/-|frameshift_variant;PPP1R9A|p.T716Nfs*11|1|0.27|ENSG00000158528|chr7:95250065-95250066|-/A|frameshift_variant	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	HCT116MG_D190212_S1	1	515.27001953125	2	515.269813	1028.52507	0.44486	0.00022922	0.065434	3.3716E-05	0.5103	0.00026294	515.2698141769674	26.437	0.26031	26.437	26.293	26.553	0					7	4	2	0	0	0	0.053324	1	9573	9573		84.738	24.664	1	9653300			576	4377	354	356	578	578					0.011950804324897035
AEANLVGREA	10	Unmodified	_AEANLVGREA_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;PPP1R9A|p.F369*|1|0.04|ENSG00000158528|chr7:94911219-94911244|TCACCTCTCCTGATGCTTCTGCATCC/-|frameshift_variant;PPP1R9A|p.K495Nfs*3|2|0.28|ENSG00000158528|chr7:95111344-95111344|A/-|frameshift_variant;PPP1R9A|p.K592Nfs*5|1|0.07|ENSG00000158528|chr7:95198366-95198366|A/-|frameshift_variant;PPP1R9A|p.T716Nfs*11|1|0.27|ENSG00000158528|chr7:95250065-95250066|-/A|frameshift_variant	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MSMS	HCT116MG_D190212_S2	2	515.2700805664062	2	515.269813	1028.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.851	1	26.499	25.999	26.999	-0.35254								0	0	0	0.00043345	1	9731	9731		146.48	46.727	1				577	4377	354	356	579	579					0.011950804324897035
AEANLVGREA	10	Unmodified	_AEANLVGREA_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;PPP1R9A|p.F369*|1|0.04|ENSG00000158528|chr7:94911219-94911244|TCACCTCTCCTGATGCTTCTGCATCC/-|frameshift_variant;PPP1R9A|p.K495Nfs*3|2|0.28|ENSG00000158528|chr7:95111344-95111344|A/-|frameshift_variant;PPP1R9A|p.K592Nfs*5|1|0.07|ENSG00000158528|chr7:95198366-95198366|A/-|frameshift_variant;PPP1R9A|p.T716Nfs*11|1|0.27|ENSG00000158528|chr7:95250065-95250066|-/A|frameshift_variant	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	HCT116MG_D190212_S3	3	515.27001953125	2	515.269813	1028.52507	0.31912	0.00016443	0.25722	0.00013254	0.57633	0.00029697	515.2698261781325	26.638	0.41626	26.489	26.307	26.723	-0.14924					11	7	2	0	0	0	0.017681	2	9568	9534;9568		125.66	46.06	1	23032000			578	4377	354	356	580;581	581					0.011950804324897035
AEANLVGREA	10	Unmodified	_AEANLVGREA_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A;PPP1R9A|p.F369*|1|0.04|ENSG00000158528|chr7:94911219-94911244|TCACCTCTCCTGATGCTTCTGCATCC/-|frameshift_variant;PPP1R9A|p.K495Nfs*3|2|0.28|ENSG00000158528|chr7:95111344-95111344|A/-|frameshift_variant;PPP1R9A|p.K592Nfs*5|1|0.07|ENSG00000158528|chr7:95198366-95198366|A/-|frameshift_variant;PPP1R9A|p.T716Nfs*11|1|0.27|ENSG00000158528|chr7:95250065-95250066|-/A|frameshift_variant	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	HCT116MG_D190212_S4	4	515.27001953125	2	515.269813	1028.52507	0.23732	0.00012228	0.30026	0.00015472	0.53758	0.000277	515.2700735808027	26.841	0.25961	26.53	26.379	26.639	-0.3114					6	4	2	0	0	0	0.09647	1	9599	9599		74.772	11.544	1	3967100			579	4377	354	356	582	582					0.011950804324897035
AEANSLVNA	9	Unmodified	_AEANSLVNA_					0	0	0		ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	MSMS	HCT116MG_D190212_S2	2	444.2348937988281	2	444.724707	887.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.299	1	31.044	30.544	31.544	-0.2554								0	0	0	0.46109	1	11541	11541		30.637	7.9003	1				580	1139	355	357	583	583					-0.013359688959440064
AEANSLVNA	9	Unmodified	_AEANSLVNA_					0	0	0		ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	MULTI-MSMS	HCT116MG_D190212_S3	3	888.442626953125	1	888.442137	887.43486	0.77687	0.00069021	-0.25531	-0.00022683	0.52157	0.00046338	888.4416606201346	31.37	0.3134	31.1	30.908	31.221	-0.27027					7	5	2	0	0	0	0.055677	1	11488	11488		71.922	10.565	1	2386900			581	1139	355	357	584	584					-0.013359688959440064
AEANSLVNAA	10	Unmodified	_AEANSLVNAA_					0	0	0		ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	MULTI-MSMS	HCT116MG_D190212_S3	3	480.2432556152344	2	480.243264	958.471974	0.46973	0.00022558	-0.32638	-0.00015674	0.14335	6.8843E-05	480.24316172152726	32.909	0.20823	32.624	32.456	32.664	-0.28511					5	3	2	0	0	0	0.35312	1	12086	12086		45.74	20.341	1	9807800			582	1139	356	358	585	585					-0.008922973501853448
AEAPAGPAL	9	Unmodified	_AEAPAGPAL_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	HCT116MG_D190212_S2	2	796.421630859375	1	796.419945	795.412668	1.0367	0.00082561	-0.11433	-9.1054E-05	0.92232	0.00073456	796.4197313842782	34.839	0.36304	34.681	34.45	34.813	-0.15834					13	6	3	0	0	0	0.0043177	1	12958	12958		146.01	28.409	1	56289000			583	1296	357	359	586	586					0.006778514262919089
AEAPAGPAL	9	Unmodified	_AEAPAGPAL_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	HCT116MG_D190212_S3	3	796.420166015625	1	796.419945	795.412668	0.70383	0.00056055	-0.025726	-2.0489E-05	0.6781	0.00054006	796.4198784951594	34.975	0.4151	34.678	34.492	34.907	-0.29707					16	7	3	0	0	0	0.0066639	1	12893	12893		123.1	13.467	1	22088000			584	1296	357	359	587	587					0.006778514262919089
AEAPAGPAL	9	Unmodified	_AEAPAGPAL_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	HCT116MG_D190212_S4	4	796.4207763671875	1	796.419945	795.412668	0.93031	0.00074091	-0.12143	-9.6713E-05	0.80887	0.0006442	796.4199217114639	35.11	0.41485	34.724	34.49	34.905	-0.38606					10	7	2	0	0	0	0.0066639	1	12849	12849		123.1	21.374	1	5035200			585	1296	357	359	588	588					0.006778514262919089
AEAPGAPAT	9	Unmodified	_AEAPGAPAT_					0	0	0		ENST00000586444.1_1_16:5147545-5147740:-|nuORF	ENST00000586444.1_1_16:5147545-5147740:-|nuORF	ENST00000586444.1_1_16:5147545-5147740:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	784.384033203125	1	784.383559	783.376283	0.9334	0.00073215	-0.55877	-0.00043829	0.37464	0.00029386	784.3831683491686	20.642	0.26388	20.262	20.13	20.394	-0.37949					6	4	2	0	0	0	0.061422	1	7258	7258		69.105	23.084	1	6757000			586	8994	358	360	589	589					-0.024070254704270155
AEAPGAVA	8	Unmodified	_AEAPGAVA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	685.3512573242188	1	685.351531	684.344254	0.74458	0.0005103	0.94258	0.000646	1.6872	0.0011563	685.3521089831538	22.072	0.26112	22.072	21.906	22.167	0					7	4	2	0	0	0	0.43493	1	7821	7821		46.921	0	1	3227800			587	927	359	361	590	590					-0.01054393153572164
AEAPGAVA	8	Unmodified	_AEAPGAVA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	685.3516235351562	1	685.351531	684.344254	0.6041	0.00041402	0.056201	3.8518E-05	0.6603	0.00045254	685.3514615557825	22.372	0.46683	21.986	21.739	22.206	-0.3852					13	8	2	0	0	0	0.1757	1	7919	7919		78.445	0	1	19562000			588	927	359	361	591	591					-0.01054393153572164
AEAPGAVA	8	Unmodified	_AEAPGAVA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	685.351531	684.344254	0.92307	0.00063263	-0.17505	-0.00011997	0.74802	0.00051266	685.3511619526271	22.001	0.46864	22.002	21.781	22.25	0.00074577	-0.018042	-0.00015502	NaN	78.445	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6602000			589	927	359	361							-0.01054393153572164
AEAPGAVAG	9	Unmodified	_AEAPGAVAG_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	742.373046875	1	742.372995	741.365718	0.90472	0.00067164	0.028473	2.1138E-05	0.93319	0.00069278	742.3728399668047	21.526	0.72674	21.141	20.857	21.583	-0.38503					27	13	3	0	0	0	0.043314	1	7549	7549		77.984	7.2688	1	66629000			590	927	360	362	592	592					-0.015310081248458118
AEAPGAVAGA	10	Unmodified	_AEAPGAVAGA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	813.4107666015625	1	813.410108	812.402832	0.90668	0.0007375	-1.1154	-0.00090728	-0.20872	-0.00016977	813.4094518662563	23.981	0.26105	23.981	23.837	24.098	0					6	4	2	0	0	0	0.13038	1	8577	8577		68.081	18.148	1	3215200			591	927	361	363	593	593					-0.010873365790871503
AEAPGAVAGA	10	Unmodified	_AEAPGAVAGA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	813.41064453125	1	813.410108	812.402832	1.0533	0.00085675	-0.1667	-0.00013559	0.88659	0.00072116	813.4098301939629	24.318	0.41637	23.938	23.718	24.135	-0.38003					13	7	2	0	0	0	0.30623	1	8720	8720		49.933	5.526	1	18582000			592	927	361	363	594	594					-0.010873365790871503
AEAPHIVVG	9	Unmodified	_AEAPHIVVG_					0	0	0		ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000495049.5_1_3:186502413-186503854:+|nuORF	ENST00000429589.5_1_3:186502413-186505273:+|nuORF	ENST00000429589.5_1_3:186502413-186505273:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	446.7482604980469	2	446.747985	891.481417	0.42077	0.00018798	0.029109	1.3005E-05	0.44988	0.00020098	446.7478381442761	33.649	0.15566	33.456	33.327	33.482	-0.19297					4	2	2	0	0	0	0.1037	1	12503	12503		57.471	25.354	1	22932000			593	4307	362	364	595	595					0.03133515726005953
AEAPHIVVG	9	Unmodified	_AEAPHIVVG_					0	0	0		ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000495049.5_1_3:186502413-186503854:+|nuORF	ENST00000429589.5_1_3:186502413-186505273:+|nuORF	ENST00000429589.5_1_3:186502413-186505273:+|nuORF	MSMS	HCT116MG_D190212_S3	3	446.7484436035156	2	446.747985	891.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.747	1	33.457	32.957	33.957	-0.29013								0	0	0	0.76718	1	12397	12397		10.824	1.4765	1				594	4307	362	364	596	596					0.03133515726005953
AEAPHLVHV	9	Unmodified	_AEAPHLVHV_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	486.7664489746094	2	486.766709	971.518865	0.42403	0.0002064	-0.27126	-0.00013204	0.15277	7.4364E-05	486.76619163121967	30.994	0.20826	30.994	30.867	31.076	0					7	3	3	0	0	0	0.011506	1	11404	11404		109.63	61.283	1	5425400			595	2963	363	365	597	597					0.03196606991616591
AEAPHLVHV	9	Unmodified	_AEAPHLVHV_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	486.76666259765625	2	486.766709	971.518865	0.35682	0.00017369	-0.13104	-6.3784E-05	0.22578	0.0001099	486.766544394458	31.314	0.31001	31.063	30.887	31.197	-0.25035					10	5	3	0	0	0	0.011506	1	11551	11551		109.63	71.478	1	33733000			596	2963	363	365	598	598					0.03196606991616591
AEAPHLVHV	9	Unmodified	_AEAPHLVHV_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	486.76605224609375	2	486.766709	971.518865	0.092633	4.5091E-05	-0.15154	-7.3763E-05	-0.058904	-2.8673E-05	486.7666221867472	31.361	0.20895	31.091	30.96	31.169	-0.27028					6	3	2	0	0	0	0.013464	1	11464	11464		104.8	56.453	1	6552800			597	2963	363	365	599	599					0.03196606991616591
AEAPHLVHVDA	11	Unmodified	_AEAPHLVHVDA_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	386.8680725097656	3	386.86825	1157.58292	-0.015945	-6.1687E-06	-0.4779	-0.00018488	-0.49384	-0.00019105	386.868215504034	30.581	0.2081	30.581	30.503	30.711	0					5	3	2	0	0	0	0.70662	1	11253	11253		11.631	4.5943	1	3097000			598	2963	364	366	600	600					0.010433423579115697
AEAPHLVHVDA	11	Unmodified	_AEAPHLVHVDA_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MSMS	HCT116MG_D190212_S1	1	579.7994995117188	2	579.798737	1157.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.674	1	30.674	30.174	31.174	0								0	0	0	0.61789	1	11259	11259		42.312	29.27	1				599	2963	364	366	601	601					0.010433423579115697
AEAPHLVHVDA	11	Unmodified	_AEAPHLVHVDA_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	579.799072265625	2	579.798737	1157.58292	0.37094	0.00021507	-0.26474	-0.00015349	0.1062	6.1573E-05	579.7986077454512	30.956	0.2594	30.689	30.456	30.716	-0.26704					8	4	3	0	0	0	0.090199	1	11403	11403		91.085	58.299	1	29474000			600	2963	364	366	602	602					0.010433423579115697
AEAPHLVHVDA	11	Unmodified	_AEAPHLVHVDA_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	579.798737	1157.58292	0.61019	0.00035379	0.34572	0.00020045	0.95591	0.00055423	580.300213203138	30.609	0.15605	30.609	30.503	30.659	0	-0.057918	0.00033115	NaN	91.085	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2962000			601	2963	364	366							0.010433423579115697
AEAPHLVHVDA	11	Unmodified	_AEAPHLVHVDA_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	579.798737	1157.58292	0.34559	0.00020037	-0.50599	-0.00029337	-0.1604	-9.3E-05	579.7987892067849	30.963	0.15627	30.702	30.604	30.761	-0.26071	0.035216	-0.00065649	NaN	91.085	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2468800			602	2963	364	366							0.010433423579115697
AEAPHLVHVDA	11	Unmodified	_AEAPHLVHVDA_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	386.86825	1157.58292	-0.16304	-6.3076E-05	-0.14275	-5.5224E-05	-0.30579	-0.0001183	386.8682456295919	30.943	0.20843	30.682	30.604	30.813	-0.26071	0.050614	0.00015923	NaN	11.631	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2167600			603	2963	364	366							0.010433423579115697
AEAPNMAVV	9	Unmodified	_AEAPNMAVV_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	HCT116MG_D190212_S3	3	901.4454956054688	1	901.444779	900.437503	0.80585	0.00072643	0.080483	7.2551E-05	0.88634	0.00079898	901.4449112970369	39.467	0.32075	39.166	38.924	39.245	-0.30137					9	5	2	0	0	0	0.041798	1	14658	14658		78.728	7.5945	1	6769100			604	3626	365	367	603	603					-0.016698367626418076
AEAPNMAVV	9	Unmodified	_AEAPNMAVV_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MATCH	HCT116MG_D190212_S2	2		1	901.444779	900.437503	1.1585	0.0010443	-1.5649	-0.0014106	-0.40636	-0.00036631	901.4439241852962	39.208	0.2581	39.13	38.968	39.226	-0.077835	-0.017871	-0.0013345	NaN	78.728	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10089000			605	3626	365	367							-0.016698367626418076
AEAPPAAAAR	10	Unmodified	_AEAPPAAAAR_					0	0	0		ENST00000396901.5_2_19:36389387-36389702:-|nuORF	ENST00000396901.5_2_19:36389387-36389702:-|nuORF	ENST00000396901.5_2_19:36389387-36389702:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	462.7486572265625	2	462.748516	923.482479	0.041861	1.9371E-05	0.33135	0.00015333	0.37321	0.0001727	462.7486144665348	19.501	0.78275	19.501	19.235	20.018	0					26	14	3	0	0	0	0.21913	1	6755	6755		57.722	1.5449	1	5619300			606	7658	366	368	604	604					0.01767730094888975
AEAPPAAAAR	10	Unmodified	_AEAPPAAAAR_					0	0	0		ENST00000396901.5_2_19:36389387-36389702:-|nuORF	ENST00000396901.5_2_19:36389387-36389702:-|nuORF	ENST00000396901.5_2_19:36389387-36389702:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	462.7482604980469	2	462.748516	923.482479	0.34166	0.0001581	-0.078255	-3.6213E-05	0.2634	0.00012189	462.7483764033952	19.191	1.1974	19.26	19.031	20.228	0.069159					53	22	4	0	0	0	0.16489	1	6547	6547		62.573	1.2152	1	21702000			607	7658	366	368	605	605					0.01767730094888975
AEAPPGVET	9	Unmodified	_AEAPPGVET_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000545388.2_1_16:71955203-71956613:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S2	2	870.4210815429688	1	870.420339	869.413062	0.83088	0.00072321	0.15277	0.00013298	0.98365	0.00085619	870.4203301661018	26.417	0.9885	26.055	25.662	26.65	-0.36164					29	18	2	0	0	0	0.0090481	1	9500	9500		115.69	36.964	1	27610000			608	9571	367	369	606	606					-0.026867736445183255
AEAPPGVET	9	Unmodified	_AEAPPGVET_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000545388.2_1_16:71955203-71956613:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S2	2	435.71380615234375	2	435.713808	869.413062	0.022847	9.9548E-06	0.23188	0.00010103	0.25473	0.00011099	435.7138424459221	26.371	0.62272	26.009	25.818	26.441	-0.36164					20	11	2	0	0	0	0.049545	1	9584	9584		74.929	34.972	1	11323000			609	9571	367	369	607	607					-0.026867736445183255
AEAPPGVET	9	Unmodified	_AEAPPGVET_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000545388.2_1_16:71955203-71956613:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S3	3	870.4201049804688	1	870.420339	869.413062	0.92112	0.00080176	-0.059542	-5.1826E-05	0.86158	0.00074993	870.4201990420121	26.36	1.1462	26.211	25.786	26.932	-0.14924					41	21	3	0	0	0	0.01389	2	9394	9394;9637		103.75	34.643	1	13985000			610	9571	367	369	608;609	608					-0.026867736445183255
AEAPPGVET	9	Unmodified	_AEAPPGVET_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000545388.2_1_16:71955203-71956613:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S3	3	435.7381286621094	2	435.713808	869.413062	0.27819	0.00012121	0.027075	1.1797E-05	0.30526	0.00013301	435.7136469914901	26.274	0.88545	26.124	25.838	26.723	-0.14924					30	16	2	0	0	0	0.069315	2	9495	9406;9495		65.235	25.278	1	5303500			611	9571	367	369	610;611	611					-0.026867736445183255
AEAPPPKIP	9	Unmodified	_AEAPPPKIP_					0	0	0		nc|ENSG00000107643|P45983-5|MAPK8;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF	nc|ENSG00000107643|P45983-5|MAPK8	nc|ENSG00000107643|P45983-5|MAPK8	MSMS	HCT116MG_D190212_S1	1	460.26629638671875	2	460.26601	918.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.002	1	30.002	29.502	30.502	0								0	0	0	0.077161	1	10987	10987		62.573	28.47	1				612	2122	368	370	612	612					0.054949729028635375
AEAPPPKIP	9	Unmodified	_AEAPPPKIP_					0	0	0		nc|ENSG00000107643|P45983-5|MAPK8;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF	nc|ENSG00000107643|P45983-5|MAPK8	nc|ENSG00000107643|P45983-5|MAPK8	MSMS	HCT116MG_D190212_S1	1	460.26556396484375	2	460.26601	918.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.603	1	30.603	30.103	31.103	0								0	0	0	0.22299	1	11230	11230		45.7	24.163	1				613	2122	368	370	613	613					0.054949729028635375
AEAPPPKIP	9	Unmodified	_AEAPPPKIP_					0	0	0		nc|ENSG00000107643|P45983-5|MAPK8;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF	nc|ENSG00000107643|P45983-5|MAPK8	nc|ENSG00000107643|P45983-5|MAPK8	MULTI-MSMS	HCT116MG_D190212_S2	2	460.2662658691406	2	460.26601	918.517468	0.076858	3.5375E-05	0.066152	3.0448E-05	0.14301	6.5823E-05	460.26594630560743	30.698	2.169	30.431	29.684	31.853	-0.26704					86	41	3	0	0	0	0.034046	3	11342	11105;11342;11580		82.529	42.572	1	49069000			614	2122	368	370	614;615;616	615					0.054949729028635375
AEAPPPKIP	9	Unmodified	_AEAPPPKIP_					0	0	0		nc|ENSG00000107643|P45983-5|MAPK8;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF	nc|ENSG00000107643|P45983-5|MAPK8	nc|ENSG00000107643|P45983-5|MAPK8	MULTI-MSMS	HCT116MG_D190212_S3	3	460.2659912109375	2	460.26601	918.517468	0.36171	0.00016648	-0.091259	-4.2003E-05	0.27045	0.00012448	460.2658500014332	30.586	2.1125	30.336	29.702	31.815	-0.24946					85	53	3	0	0	0	0.034046	3	11225	11008;11225;11456		82.529	42.572	1	23764000			615	2122	368	370	617;618;619	618					0.054949729028635375
AEAPPPKIP	9	Unmodified	_AEAPPPKIP_					0	0	0		nc|ENSG00000107643|P45983-5|MAPK8;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000471272.1_1_10:49633986-49635218:+|nuORF	nc|ENSG00000107643|P45983-5|MAPK8	nc|ENSG00000107643|P45983-5|MAPK8	MULTI-MSMS	HCT116MG_D190212_S4	4	460.7455749511719	2	460.26601	918.517468	0.047911	2.2052E-05	0.37968	0.00017475	0.42759	0.0001968	460.2660500589816	30.681	1.5241	30.317	30.181	31.705	-0.36416					56	36	2	0	0	0	0.15273	4	11267	11062;11267;11279;11517		47.749	17.112	1	7483100			616	2122	368	370	620;621;622;623	621					0.054949729028635375
AEAPPPPPP	9	Unmodified	_AEAPPPPPP_					0	0	0		ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	MSMS	HCT116MG_D190212_S3	3	436.7293395996094	2	436.729261	871.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.082	1	24.021	23.521	24.521	-0.061449								0	0	0	0.11425	1	8535	8535		53.576	9.1686	1				617	7285	369	371	624	624					0.00310424460383274
AEAPPPSVV	9	Unmodified	_AEAPPPSVV_					0	0	0		ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;DDX17|p.K121Sfs*4|1|0.59|ENSG00000100201|chr22:38501206-38501206|T/-|frameshift_variant	ENSG00000100201|ENST00000403230|DDX17	ENSG00000100201|ENST00000403230|DDX17	MULTI-MSMS	HCT116MG_D190212_S2	2	867.4669799804688	1	866.46181	865.454533	0.80721	0.00069942	0.23268	0.00020161	1.0399	0.00090102	866.4617913993745	32.212	0.93593	31.982	31.631	32.567	-0.23009					31	17	2	0	0	0	0.077982	1	11881	11881		62.573	14.227	1	20290000			618	1672	370	372	625	625					0.016424071148207986
AEAPPPSVV	9	Unmodified	_AEAPPPSVV_					0	0	0		ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;DDX17|p.K121Sfs*4|1|0.59|ENSG00000100201|chr22:38501206-38501206|T/-|frameshift_variant	ENSG00000100201|ENST00000403230|DDX17	ENSG00000100201|ENST00000403230|DDX17	MULTI-MSMS	HCT116MG_D190212_S3	3	866.4627075195312	1	866.46181	865.454533	0.73327	0.00063535	0.17758	0.00015386	0.91085	0.00078921	866.4619307985303	32.214	0.88498	31.936	31.682	32.567	-0.27841					31	16	2	0	0	0	0.0051486	2	11762	11762;12012		136.33	28.336	1	8073600			619	1672	370	372	626;627	626					0.016424071148207986
AEAPPSKSP	9	Unmodified	_AEAPPSKSP_					0	0	0		ENST00000483468.5_1_6:139251086-139262595:-|nuORF;REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant;REPS1|p.P550Lfs*14|1|0.22|ENSG00000135597|chr6:138915929-138915929|G/-|frameshift_variant;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	ENST00000483468.5_1_6:139251086-139262595:-|nuORF	ENST00000483468.5_1_6:139251086-139262595:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	442.22979736328125	2	442.229625	882.444697	0.084902	3.7546E-05	-0.79623	-0.00035212	-0.71133	-0.00031457	442.22919544211925	16.244	0.67823	15.909	15.689	16.367	-0.33451					17	12	2	0	0	0	0.14362	1	5492	5492		49.554	16.769	1	3333700			620	3360	371	373	628	628					-0.0012278089055826058
AEAPPSKSP	9	Unmodified	_AEAPPSKSP_					0	0	0		ENST00000483468.5_1_6:139251086-139262595:-|nuORF;REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant;REPS1|p.P550Lfs*14|1|0.22|ENSG00000135597|chr6:138915929-138915929|G/-|frameshift_variant;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	ENST00000483468.5_1_6:139251086-139262595:-|nuORF	ENST00000483468.5_1_6:139251086-139262595:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	442.22967529296875	2	442.229625	882.444697	0.13725	6.0695E-05	-0.078523	-3.4725E-05	0.058725	2.597E-05	442.2294470206349	15.376	0.67678	15.46	15.143	15.82	0.084557					22	12	3	0	0	0	0.066823	1	5016	5016		66.457	20.757	1	2045700			621	3360	371	373	629	629					-0.0012278089055826058
AEAPPSKSP	9	Unmodified	_AEAPPSKSP_					0	0	0		ENST00000483468.5_1_6:139251086-139262595:-|nuORF;REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant;REPS1|p.P550Lfs*14|1|0.22|ENSG00000135597|chr6:138915929-138915929|G/-|frameshift_variant;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	ENST00000483468.5_1_6:139251086-139262595:-|nuORF	ENST00000483468.5_1_6:139251086-139262595:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	442.22906494140625	2	442.229625	882.444697	-0.36888	-0.00016313	0.46721	0.00020661	0.098334	4.3486E-05	442.22972627425406	15.431	0.33394	15.269	15.075	15.409	-0.16173					10	6	2	0	0	0	0.22946	2	4986	4976;4986		38.176	11.292	1	711100			622	3360	371	373	630;631	631					-0.0012278089055826058
AEAPPSVAP	9	Unmodified	_AEAPPSVAP_					0	0	0		nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C;ENSG00000015133|ENST00000389857|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	MULTI-MSMS	HCT116MG_D190212_S2	2	838.4312133789062	1	838.430509	837.423233	0.78731	0.00066011	-0.095985	-8.0476E-05	0.69133	0.00057963	838.4302871115757	28.947	0.92377	28.631	28.453	29.377	-0.31613					26	17	2	0	0	0	0.007119	2	10586	10586;10853		120.45	23.376	1	39616000			623	923	372	374	632;633	632					-0.0019816591927792615
AEAPPSVAP	9	Unmodified	_AEAPPSVAP_					0	0	0		nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C;ENSG00000015133|ENST00000389857|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	MULTI-MSMS	HCT116MG_D190212_S2	2	419.7189025878906	2	419.718893	837.423233	0.05345	2.2434E-05	0.09706	4.0738E-05	0.15051	6.3172E-05	419.71876354101926	28.896	0.92377	28.58	28.453	29.377	-0.31613					20	17	2	0	0	0	0.057285	1	10588	10588		71.134	17.558	1	22408000			624	923	372	374	634	634					-0.0019816591927792615
AEAPPSVAP	9	Unmodified	_AEAPPSVAP_					0	0	0		nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C;ENSG00000015133|ENST00000389857|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	MULTI-MSMS	HCT116MG_D190212_S3	3	838.429931640625	1	838.430509	837.423233	0.85584	0.00071756	-0.19033	-0.00015958	0.66551	0.00055798	838.4302493483115	29.025	1.4156	28.803	28.525	29.941	-0.22195					56	26	3	0	0	0	0.007119	2	10480	10480;10723		120.45	29.848	1	25642000			625	923	372	374	635;636	635					-0.0019816591927792615
AEAPPSVAP	9	Unmodified	_AEAPPSVAP_					0	0	0		nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C;ENSG00000015133|ENST00000389857|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	MULTI-MSMS	HCT116MG_D190212_S3	3	419.71881103515625	2	419.718893	837.423233	0.20589	8.6414E-05	-0.054033	-2.2679E-05	0.15185	6.3736E-05	419.7187760907507	29.066	1.2045	28.844	28.525	29.73	-0.22196					46	22	3	0	0	0	0.020181	2	10491	10491;10751		96.285	25.151	1	18226000			626	923	372	374	637;638	637					-0.0019816591927792615
AEAPPSVAP	9	Unmodified	_AEAPPSVAP_					0	0	0		nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C;ENSG00000015133|ENST00000389857|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	MULTI-MSMS	HCT116MG_D190212_S4	4	838.43115234375	1	838.430509	837.423233	0.70618	0.00059208	-0.025823	-2.165E-05	0.68036	0.00057043	838.4303905856221	29.137	1.2993	28.796	28.522	29.822	-0.34059					43	24	3	0	0	0	0.012168	2	10470	10470;10708		108	26.133	1	11236000			627	923	372	374	639;640	639					-0.0019816591927792615
AEAPPSVAP	9	Unmodified	_AEAPPSVAP_					0	0	0		nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C;ENSG00000015133|ENST00000389857|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	MULTI-MSMS	HCT116MG_D190212_S4	4	419.71881103515625	2	419.718893	837.423233	0.14356	6.0255E-05	0.043144	1.8109E-05	0.1867	7.8363E-05	419.7188179345322	29.101	1.0392	28.76	28.522	29.561	-0.34059					37	19	3	0	0	0	0.035914	2	10476	10476;10707		81.613	24.142	1	12894000			628	923	372	374	641;642	641					-0.0019816591927792615
AEAPQLRPA	9	Unmodified	_AEAPQLRPA_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MSMS	HCT116MG_D190212_S3	3	476.7640686035156	2	476.764166	951.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.762	1	26.612	26.112	27.112	-0.14924								0	0	0	0.7663	1	9615	9615		13.906	2.2658	1				629	6131	373	375	643	643					0.036083031289877
AEAPSESKPAA	11	Unmodified	_AEAPSESKPAA_					0	0	0		LPIN2|p.I662Yfs*22|1|0.08|ENSG00000101577|chr18:2924502-2924503|-/G|frameshift_variant;ENSG00000101577|ENST00000677752|LPIN2	LPIN2|p.I662Yfs*22|1|0.08|ENSG00000101577|chr18:2924502-2924503|-/G|frameshift_variant	LPIN2|p.I662Yfs*22|1|0.08|ENSG00000101577|chr18:2924502-2924503|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	529.26171875	2	529.261653	1056.50875	0.35158	0.00018608	-0.27945	-0.0001479	0.072128	3.8174E-05	529.2614924001851	16.393	0.20805	16.478	16.393	16.601	0.085424					7	3	3	0	0	0	0.58525	1	5459	5459		37.075	0.94762	1	3177800			630	1798	374	376	644	644					-0.01724045524269968
AEAPWENF	8	Unmodified	_AEAPWENF_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MSMS	HCT116MG_D190212_S3	3	482.2485046386719	2	482.213975	962.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.965	1	16.051	15.551	16.551	0.085423								0	0	0	0.84187	1	5264	5264		19.257	1.1106	1		+		631	11519	375	377	645	645					-0.06931353924665018
AEAPWENF	8	Unmodified	_AEAPWENF_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MSMS	HCT116MG_D190212_S4	4	482.2120666503906	2	482.213975	962.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.737	1	15.575	15.075	16.075	-0.16173								0	0	0	0.8837	1	5097	5097		13.906	1.3745	1		+		632	11519	375	377	646	646					-0.06931353924665018
AEAPWLSKP	9	Unmodified	_AEAPWLSKP_					0	0	0		ENST00000525223.1_1_8:144671159-144671477:-|nuORF;ENSG00000104529|ENST00000618139|EEF1D	ENST00000525223.1_1_8:144671159-144671477:-|nuORF	ENST00000525223.1_1_8:144671159-144671477:-|nuORF	MSMS	HCT116MG_D190212_S2	2	499.7692565917969	2	499.768917	997.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.629	1	41.561	41.061	42.061	-0.068199								0	0	0	0.0047254	1	15736	15736		117.76	57.687	1				633	1939	376	378	647	647					0.024420714145207967
AEAPWLSKP	9	Unmodified	_AEAPWLSKP_					0	0	0		ENST00000525223.1_1_8:144671159-144671477:-|nuORF;ENSG00000104529|ENST00000618139|EEF1D	ENST00000525223.1_1_8:144671159-144671477:-|nuORF	ENST00000525223.1_1_8:144671159-144671477:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	500.270263671875	2	499.768917	997.523281	0.32822	0.00016404	-0.43303	-0.00021641	-0.10481	-5.238E-05	499.76860245076637	41.829	0.29494	41.526	41.382	41.677	-0.30257					11	6	2	0	0	0	0.029121	1	15583	15583		87.258	39.51	1	5828700			634	1939	376	378	648	648					0.024420714145207967
AEAPWLSKP	9	Unmodified	_AEAPWLSKP_					0	0	0		ENST00000525223.1_1_8:144671159-144671477:-|nuORF;ENSG00000104529|ENST00000618139|EEF1D	ENST00000525223.1_1_8:144671159-144671477:-|nuORF	ENST00000525223.1_1_8:144671159-144671477:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	500.27105712890625	2	499.768917	997.523281	0.42579	0.0002128	0.22902	0.00011446	0.65481	0.00032725	499.76882738810923	41.916	0.24115	41.539	41.442	41.683	-0.37637					5	4	2	0	0	0	0.16285	1	15396	15396		45.74	21.719	1	3215200			635	1939	376	378	649	649					0.024420714145207967
AEAQEGIR	8	Unmodified	_AEAQEGIR_					0	0	0			REV__ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant	REV__ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	437.22491455078125	2	437.224874	872.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.532	1	19.532	19.032	20.032	0								0	0	0	0.67283	1	6778	6778		32.786	0.4802	1		+		636	11037	377	379	650	650					-0.006125491760940349
AEAQHLYQS	9	Unmodified	_AEAQHLYQS_					0	0	0		nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG	nc|ENSG00000227345|Q86W56-3|PARG	nc|ENSG00000227345|Q86W56-3|PARG	MULTI-MSMS	HCT116MG_D190212_S2	2	523.7491455078125	2	523.748713	1045.48287	0.32337	0.00016936	0.79991	0.00041895	1.1233	0.00058831	523.749151383551	23.358	0.15503	22.973	22.882	23.037	-0.3852					4	2	2	0	0	0	0.30874	1	8346	8346		29.841	7.1043	1	11162000			637	6491	378	380	651	651					-0.038048949759058814
AEAQHLYQS	9	Unmodified	_AEAQHLYQS_					0	0	0		nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG	nc|ENSG00000227345|Q86W56-3|PARG	nc|ENSG00000227345|Q86W56-3|PARG	MULTI-MSMS	HCT116MG_D190212_S3	3	523.749267578125	2	523.748713	1045.48287	0.25229	0.00013214	0.42737	0.00022384	0.67966	0.00035597	523.7489218400673	22.836	0.24814	22.817	22.699	22.948	-0.018869					6	4	2	0	0	0	0.17423	1	8062	8062		43.982	11.196	1	4223100			638	6491	378	380	652	652					-0.038048949759058814
AEAQKLGKP	9	Unmodified	_AEAQKLGKP_					0	0	0		ENST00000414758.1_1_15:43739558-43748186:-|nuORF;ENST00000480860.1_1_15:43733722-43748345:-|nuORF;ENST00000605155.1_1_15:43738784-43748345:-|nuORF;TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	471.7762451171875	2	471.274367	940.53418	0.32239	0.00015194	-0.10657	-5.0225E-05	0.21582	0.00010171	471.2742006787247	18.167	0.78198	18.167	17.568	18.35	0					23	14	2	0	0	0	0.14376	1	6096	6096		49.527	13.4	1	11090000			639	1184	379	381	653	653					0.06153473788822339
AEAQKLGKP	9	Unmodified	_AEAQKLGKP_					0	0	0		ENST00000414758.1_1_15:43739558-43748186:-|nuORF;ENST00000480860.1_1_15:43733722-43748345:-|nuORF;ENST00000605155.1_1_15:43738784-43748345:-|nuORF;TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	471.2743225097656	2	471.274367	940.53418	-0.13467	-6.3469E-05	0.40333	0.00019008	0.26866	0.00012661	471.27445886687644	18.814	0.88662	18.451	17.799	18.686	-0.36325					40	16	3	0	0	0	0.031831	1	6334	6334		84.522	34.589	1	93925000			640	1184	379	381	654	654					0.06153473788822339
AEAQKLGKP	9	Unmodified	_AEAQKLGKP_					0	0	0		ENST00000414758.1_1_15:43739558-43748186:-|nuORF;ENST00000480860.1_1_15:43733722-43748345:-|nuORF;ENST00000605155.1_1_15:43738784-43748345:-|nuORF;TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	941.5419921875	1	941.541457	940.53418	0.29821	0.00028078	0.22341	0.00021035	0.52163	0.00049113	941.5416571205369	18.814	0.31169	18.451	18.217	18.529	-0.36325					9	5	2	0	0	0	0.0063854	1	6517	6517		125.53	45.933	1	5783000			641	1184	379	381	655	655					0.06153473788822339
AEAQKLGKP	9	Unmodified	_AEAQKLGKP_					0	0	0		ENST00000414758.1_1_15:43739558-43748186:-|nuORF;ENST00000480860.1_1_15:43733722-43748345:-|nuORF;ENST00000605155.1_1_15:43738784-43748345:-|nuORF;TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	471.2746276855469	2	471.274367	940.53418	-0.09732	-4.5864E-05	0.25991	0.00012249	0.16259	7.6627E-05	471.27439296912763	17.63	1.0408	17.711	16.961	18.002	0.081358					36	19	3	0	0	0	0.051033	1	5776	5776		74.2	30.341	1	15378000			642	1184	379	381	656	656					0.06153473788822339
AEAQKLGKP	9	Unmodified	_AEAQKLGKP_					0	0	0		ENST00000414758.1_1_15:43739558-43748186:-|nuORF;ENST00000480860.1_1_15:43733722-43748345:-|nuORF;ENST00000605155.1_1_15:43738784-43748345:-|nuORF;TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	ENST00000414758.1_1_15:43739558-43748186:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	471.2749328613281	2	471.274367	940.53418	0.0072379	3.411E-06	0.27026	0.00012736	0.27749	0.00013078	471.27445769298805	17.993	0.67536	17.818	17.22	17.896	-0.17501					17	12	2	0	0	0	0.068828	1	5957	5957		65.474	27.5	1	3979100			643	1184	379	381	657	657					0.06153473788822339
AEAQLWWAA	9	Unmodified	_AEAQLWWAA_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298;ENST00000483315.1_1_21:33975401-33976611:-|nuORF	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MULTI-MSMS	HCT116MG_D190212_S2	2	1045.5108642578125	1	1045.51016	1044.50288	0.8202	0.00085752	0.049252	5.1494E-05	0.86945	0.00090902	1045.5100087824603	56.734	0.21328	56.555	56.421	56.635	-0.17904					7	3	3	0	0	0	0.090581	1	21917	21917		60.074	24.03	1	42276000			644	4394	380	382	658	658					-0.017590992453051513
AEAQPEATA	9	Unmodified	_AEAQPEATA_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S1	1	887.4109497070312	1	887.410502	886.403226	0.71127	0.00063118	0.030506	2.7072E-05	0.74177	0.00065826	887.410335482977	18.272	0.26077	18.272	18.141	18.402	0					7	4	2	0	0	0	0.0043772	1	6302	6302		145.13	45.331	1	2375500			645	1517	381	383	659	659					-0.044519616498973846
AEAQPEATA	9	Unmodified	_AEAQPEATA_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S2	2	887.4112548828125	1	887.410502	886.403226	0.39378	0.00034945	0.4657	0.00041326	0.85948	0.00076271	887.4106792937092	18.604	0.573	18.241	18.008	18.581	-0.36325					22	10	3	0	0	0	0.0023719	2	6389	6389;6518		185.05	62.871	1	24076000			646	1517	381	383	660;661	660					-0.044519616498973846
AEAQPEATA	9	Unmodified	_AEAQPEATA_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S3	3	887.4114379882812	1	887.410502	886.403226	0.73687	0.0006539	0.13779	0.00012228	0.87466	0.00077618	887.4104314357722	18.154	0.93718	18.231	17.737	18.674	0.076334					36	17	4	0	0	0	0.0035381	1	6112	6112		171.09	47.635	1	24439000			647	1517	381	383	662	662					-0.044519616498973846
AEAQPEATA	9	Unmodified	_AEAQPEATA_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S4	4	887.411376953125	1	887.410502	886.403226	0.65795	0.00058387	0.20345	0.00018054	0.86139	0.00076441	887.4103281958241	18.256	0.51734	18.081	17.895	18.413	-0.1754					20	9	3	0	0	0	0.0023719	1	6106	6106		185.05	73.763	1	7410300			648	1517	381	383	663	663					-0.044519616498973846
AEAQPEATA	9	Unmodified	_AEAQPEATA_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S4	4	444.20782470703125	2	444.208889	886.403226	0.16352	7.2639E-05	-2.6558	-0.0011797	-2.4923	-0.0011071	444.2077315762911	18.235	0.3614	18.06	17.896	18.257	-0.17501					9	6	2	0	0	0	0.34272	1	6145	6145		26.268	3.5319	1	1128200			649	1517	381	383	664	664					-0.044519616498973846
AEAQRENLSA	10	Unmodified	_AEAQRENLSA_					0	0	0		nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170-2|GSPT1	nc|ENSG00000103342|P15170-2|GSPT1	MULTI-MSMS	HCT116MG_D190212_S1	1	544.7700805664062	2	544.770177	1087.5258	0.66407	0.00036177	-0.31263	-0.00017031	0.35144	0.00019146	544.7699227419204	20.566	0.2602	20.566	20.435	20.696	0					7	4	2	0	0	0	0.019431	1	7202	7202		121.5	48.307	1	11305000			650	1891	382	384	665	665					-0.01446124918447822
AEAQRENLSA	10	Unmodified	_AEAQRENLSA_					0	0	0		nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170-2|GSPT1	nc|ENSG00000103342|P15170-2|GSPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	544.7700805664062	2	544.770177	1087.5258	0.46803	0.00025497	0.35986	0.00019604	0.82789	0.00045101	544.7701883897104	21.098	0.26056	20.715	20.546	20.807	-0.38288					10	4	3	0	0	0	0.09647	1	7400	7400		74.772	17.664	1	53584000			651	1891	382	384	666	666					-0.01446124918447822
AEAQRENLSA	10	Unmodified	_AEAQRENLSA_					0	0	0		nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170-2|GSPT1	nc|ENSG00000103342|P15170-2|GSPT1	MSMS	HCT116MG_D190212_S3	3	544.7703857421875	2	544.770177	1087.5258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.453	1	20.499	19.999	20.999	0.046091								0	0	0	0.053368	1	7074	7074		94.909	21.712	1				652	1891	382	384	667	667					-0.01446124918447822
AEAQRENLSA	10	Unmodified	_AEAQRENLSA_					0	0	0		nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170-2|GSPT1	nc|ENSG00000103342|P15170-2|GSPT1	MULTI-SECPEP	HCT116MG_D190212_S4	4	544.291015625	2	544.770177	1087.5258	0.52239	0.00028458	0.24798	0.00013509	0.77037	0.00041967	544.770048560307	20.736	0.25978	20.526	20.396	20.656	-0.20959					6	4	2	0	0	0	0.25513	1	7118	7118		37.771	6.1356	1	2238000			653	1891	382	384	668	668					-0.01446124918447822
AEAQVTPKP	9	Unmodified	_AEAQVTPKP_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MSMS	HCT116MG_D190212_S2	2	470.75762939453125	2	470.758549	939.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.938	1	21.553	21.053	22.053	-0.38503								0	0	0	0.036088	1	7747	7747		76.825	29.076	1				654	5525	383	385	669	669					0.03037481034857592
AEAQVTPKP	9	Unmodified	_AEAQVTPKP_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MSMS	HCT116MG_D190212_S3	3	470.7586364746094	2	470.758549	939.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.205	1	21.224	20.724	21.724	0.018446								0	0	0	0.0095329	1	7378	7378		107.56	14.398	1				655	5525	383	385	670	670					0.03037481034857592
AEARGRRGPEV	11	Unmodified	_AEARGRRGPEV_					0	0	0		ENST00000262482.10_2_17:4843600-4843825:+|nuORF	ENST00000262482.10_2_17:4843600-4843825:+|nuORF	ENST00000262482.10_2_17:4843600-4843825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	399.88629150390625	3	399.886415	1196.63742	-0.0017448	-6.9771E-07	-0.33259	-0.000133	-0.33434	-0.0001337	399.8861985295101	14.835	0.31209	14.835	14.598	14.91	0					12	5	3	0	0	0	0.65047	1	4907	4907		23.964	8.2255	1	3446200			656	6866	384	386	671	671					0.04696354229326971
AEARHQQVQA	10	Unmodified	_AEARHQQVQA_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MSMS	HCT116MG_D190212_S2	2	569.2921142578125	2	569.291611	1136.56867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.481	1	15.154	14.654	15.654	-0.32684								0	0	0	0.3888	1	5146	5146		53.317	15.141	1				657	2765	385	387	672	672					0.005846899296102492
AEARPFEVL	9	Unmodified	_AEARPFEVL_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2800903320312	2	516.279649	1030.54475	0.57911	0.00029898	0.75755	0.00039111	1.3367	0.00069009	516.2798620771425	47.807	0.20655	47.674	47.532	47.738	-0.13281					7	3	3	0	0	0	0.082877	1	18265	18265		61.602	17.83	1	18572000			658	1648	386	388	673	673					0.030694564432451443
AEARPFEVL	9	Unmodified	_AEARPFEVL_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	516.2802124023438	2	516.279649	1030.54475	0.1704	8.7972E-05	0.67755	0.0003498	0.84794	0.00043777	516.2799633397517	48.1	0.26085	47.784	47.619	47.879	-0.31596					8	4	2	0	0	0	0.064006	1	18099	18099		67.838	33.436	1	5372900			659	1648	386	388	674	674					0.030694564432451443
AEARPFEVL	9	Unmodified	_AEARPFEVL_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	516.2796020507812	2	516.279649	1030.54475	0.24608	0.00012705	0.4543	0.00023454	0.70038	0.00036159	516.7814743802361	48.173	0.3109	47.806	47.573	47.883	-0.36728					8	5	2	0	0	0	0.1535	1	17824	17824		47.594	47.594	1	3459700			660	1648	386	388	675	675					0.030694564432451443
AEARPGATA	9	Unmodified	_AEARPGATA_					0	0	0		ENST00000590836.1_1_17:41132593-41133163:+|nuORF;RUNDC1|p.K513Qfs*16|1|0.27|ENSG00000198863|chr17:42991405-42991406|-/C|frameshift_variant;RUNDC1|p.F530Lfs*9|1|0.11|ENSG00000198863|chr17:42991461-42991461|T/-|frameshift_variant;nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1	ENST00000590836.1_1_17:41132593-41133163:+|nuORF	ENST00000590836.1_1_17:41132593-41133163:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	422.2196960449219	2	422.219591	842.42463	-0.009816	-4.1445E-06	0.24587	0.00010381	0.23606	9.9668E-05	422.2197546252645	16.078	0.47008	15.744	15.48	15.951	-0.33451					13	8	2	0	0	0	0.23993	1	5358	5358		37.075	6.4381	1	4120600			661	6289	387	389	676	676					-0.00288531830528882
AEARRILAA	9	Unmodified	_AEARRILAA_					0	0	0		nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	485.793212890625	2	485.793258	969.571963	0.34866	0.00016938	-0.29308	-0.00014237	0.055582	2.7001E-05	485.793037251987	25.945	0.20755	25.576	25.446	25.654	-0.36914					6	3	2	0	0	0	0.14171	1	9395	9395		49.933	9.9757	1	12517000			662	4357	388	390	677	677					0.08595984774274257
AEARSTPGP	9	Unmodified	_AEARSTPGP_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	HCT116MG_D190212_S2	2	443.22491455078125	2	443.224874	884.435195	0.15346	6.8017E-05	0.59811	0.0002651	0.75157	0.00033312	443.2252178316663	17.755	0.62694	17.398	16.97	17.597	-0.35647					19	11	2	0	0	0	0.037825	1	6037	6037		80.676	28.408	1	7615900			663	5181	389	391	678	678					-0.011645491760873483
AEARSTPGP	9	Unmodified	_AEARSTPGP_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MSMS	HCT116MG_D190212_S3	3	443.2249450683594	2	443.224874	884.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.639	1	16.724	16.224	17.224	0.085424								0	0	0	0.74436	1	5536	5536		16.942	0	1				664	5181	389	391	679	679					-0.011645491760873483
AEARSTPGPAG	11	Unmodified	_AEARSTPGPAG_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MSMS	HCT116MG_D190212_S4	4	507.2545166015625	2	507.254163	1012.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.466	1	17.296	16.796	17.796	-0.17047								0	0	0	0.93717	1	5796	5796		13.042	0.80181	1				665	5181	390	392	680	680					-0.011974926016137033
AEASASAAYKA	11	Unmodified	_AEASASAAYKA_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	HCT116MG_D190212_S2	2	520.2564697265625	2	520.256371	1038.49819	0.33325	0.00017337	-0.31896	-0.00016594	0.014282	7.4303E-06	520.2561960361332	20.747	0.31369	20.368	20.236	20.55	-0.37949					9	5	2	0	0	0	0.25847	1	7292	7292		68.76	30.786	1	11740000			666	1159	391	393	681	681					-0.019520281786981286
AEASASAAYKA	11	Unmodified	_AEASASAAYKA_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2564697265625	2	520.256371	1038.49819	0.21193	0.00011026	0.41264	0.00021468	0.62457	0.00032493	520.2565126868641	20.097	0.41654	20.145	19.999	20.416	0.048109					12	7	3	0	0	0	0.25847	1	6946	6946		68.76	32.633	1	8501400			667	1159	391	393	682	682					-0.019520281786981286
AEASASAAYKA	11	Unmodified	_AEASASAAYKA_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	HCT116MG_D190212_S4	4	520.2564086914062	2	520.256371	1038.49819	0.33048	0.00017193	-0.46833	-0.00024365	-0.13785	-7.1718E-05	520.2560987732245	20.432	0.36403	20.231	20.092	20.456	-0.20133					10	6	3	0	0	0	0.3975	1	7007	7007		55.249	21.804	1	2971600			668	1159	391	393	683	683					-0.019520281786981286
AEASFWTA	8	Unmodified	_AEASFWTA_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S1	1	882.3986206054688	1	882.399209	881.391933	0.56041	0.00049451	-0.40625	-0.00035847	0.15416	0.00013603	882.3986748030812	50.136	0.25725	50.136	49.957	50.214	0					7	4	2	0	0	0	0.23195	1	19145	19145		67.344	22.937	1	14822000			669	5216	392	394	684	684					-0.05350738953382006
AEASFWTA	8	Unmodified	_AEASFWTA_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S2	2	882.400634765625	1	882.399209	881.391933	0.76848	0.00067811	0.47463	0.00041881	1.2431	0.0010969	882.3994219994444	50.277	0.31136	50.105	49.934	50.245	-0.17191					11	5	3	0	0	0	0.12463	1	19271	19271		89.427	38.572	1	54119000			670	5216	392	394	685	685					-0.05350738953382006
AEASFWTA	8	Unmodified	_AEASFWTA_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S3	3	882.3999633789062	1	882.399209	881.391933	0.70495	0.00062205	0.0028995	2.5585E-06	0.70785	0.0006246	882.3990867506741	50.465	0.26099	50.151	49.968	50.229	-0.31381					7	4	2	0	0	0	0.17804	1	19043	19043		77.984	24.409	1	7816900			671	5216	392	394	686	686					-0.05350738953382006
AEASKEAAL	9	Unmodified	_AEASKEAAL_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8;ENST00000597917.1_1_19:17160685-17163834:-|nuORF	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MSMS	HCT116MG_D190212_S3	3	445.23492431640625	2	445.234907	888.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.374	1	19.434	18.934	19.934	0.05983								0	0	0	0.52331	1	6639	6639		27.629	6.0918	1				672	3132	393	395	687	687					0.006572017638518446
AEASMVIAV	9	Unmodified	_AEASMVIAV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000545930.5_1_11:61091835-61095006:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S1	1	890.4651489257812	1	890.46518	889.457904	0.60579	0.00053944	-0.058043	-5.1685E-05	0.54775	0.00048775	890.4649279099108	48.897	0.25829	48.897	48.768	49.027	0					7	4	2	0	0	0	0.050578	1	18624	18624		74.423	16.951	1	46067000			673	4969	394	396	688	688					0.008753338971700941
AEASMVIAV	9	Unmodified	_AEASMVIAV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000545930.5_1_11:61091835-61095006:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	890.466796875	1	890.46518	889.457904	0.8854	0.00078842	-0.068304	-6.0823E-05	0.8171	0.0007276	890.4650190843112	49.078	0.40374	48.924	48.733	49.137	-0.15405					14	7	3	0	0	0	0.050578	1	18769	18769		74.423	16.951	1	120110000			674	4969	394	396	689	689					0.008753338971700941
AEATGAYVP	9	Unmodified	_AEATGAYVP_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-2|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	HCT116MG_D190212_S3	3	878.4259643554688	1	878.425424	877.418148	0.81042	0.0007119	-0.30377	-0.00026684	0.50665	0.00044506	878.4248895020236	33.775	0.51974	33.485	33.304	33.823	-0.29013					16	9	2	0	0	0	0.071351	1	12403	12403		64.236	2.8788	1	7931800			675	2935;9448	395	397	690	690					-0.0254646978190749
AEATGAYVP	9	Unmodified	_AEATGAYVP_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-2|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	HCT116MG_D190212_S4	4	878.4255981445312	1	878.425424	877.418148	0.955	0.0008389	-0.53769	-0.00047232	0.41731	0.00036658	878.4249241115008	33.876	0.4665	33.491	33.311	33.777	-0.38426					11	8	2	0	0	0	0.050578	1	12359	12359		74.423	23.568	1	3425800			676	2935;9448	395	397	691	691					-0.0254646978190749
AEATGAYVP	9	Unmodified	_AEATGAYVP_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-2|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	878.425424	877.418148	1.0691	0.00093911	1.6252	0.0014276	2.6943	0.0023667	878.4251155673072	33.628	0.36405	33.435	33.327	33.691	-0.19296	-0.035227	0.0017561	NaN	74.423	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14060000			677	2935;9448	395	397							-0.0254646978190749
AEATQFLANT	10	Unmodified	_AEATQFLANT_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2642822265625	2	533.264196	1064.51384	0.44182	0.00023561	0.26161	0.00013951	0.70343	0.00037512	533.2642299601591	18.936	0.15615	19.005	18.927	19.083	0.069159					4	2	2	0	0	0	0.64492	1	6490	6490		24.991	1.2012	1	4063700			678	4269	396	398	692	692					-0.015837416616705013
AEATSMVSTG	10	Unmodified	_AEATSMVSTG_					0	0	0			REV__STAU2|p.S474_S475insVM|1|0.05|ENSG00000040341|chr8:73552119-73552120|-/CATCAC|inframe_insertion	REV__STAU2|p.S474_S475insVM|1|0.05|ENSG00000040341|chr8:73552119-73552120|-/CATCAC|inframe_insertion	MULTI-MSMS	HCT116MG_D190212_S4	4	477.2164001464844	2	477.215857	952.417161	0.51418	0.00024538	0.37025	0.00017669	0.88444	0.00042207	477.2161510912404	40.755	0.23585	40.377	40.234	40.47	-0.37828					7	4	2	0	0	0	0.82332	1	14988	14988		10.074	0.6908	1	1866900	+		679	17597	397	399	693	693					-0.06095052213095187
AEATSMVSTG	10	Unmodified	_AEATSMVSTG_					0	0	0			REV__STAU2|p.S474_S475insVM|1|0.05|ENSG00000040341|chr8:73552119-73552120|-/CATCAC|inframe_insertion	REV__STAU2|p.S474_S475insVM|1|0.05|ENSG00000040341|chr8:73552119-73552120|-/CATCAC|inframe_insertion	MULTI-MATCH	HCT116MG_D190212_S3	3		2	477.215857	952.417161	0.32835	0.0001567	0.24622	0.0001175	0.57458	0.0002742	477.2160170149678	40.699	0.15644	40.397	40.267	40.423	-0.30161	0.010373	-8.2472E-05	NaN	10.074	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2117300	+		680	17597	397	399							-0.06095052213095187
AEATSMVSTG	10	Unmodified	_AEATSMVSTG_					0	0	0			REV__STAU2|p.S474_S475insVM|1|0.05|ENSG00000040341|chr8:73552119-73552120|-/CATCAC|inframe_insertion	REV__STAU2|p.S474_S475insVM|1|0.05|ENSG00000040341|chr8:73552119-73552120|-/CATCAC|inframe_insertion	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	477.215857	952.417161	0.51418	0.00024538	0.37025	0.00017669	0.88444	0.00042207	477.2161510912404	40.755	0.23585	40.377	40.234	40.47	-0.37828	-0.010373	3.5907E-05	NaN	10.074	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1866900	+		681	17597	397	399							-0.06095052213095187
AEAVAHFEA	9	Unmodified	_AEAVAHFEA_					0	0	0		FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant;FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46	FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant	FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	472.5870666503906	2	472.727249	943.439946	0.044144	2.0868E-05	0.17677	8.3564E-05	0.22091	0.00010443	472.72714181588003	32.196	0.20827	32.196	32.014	32.222	0					5	3	2	0	0	0	0.23771	1	11835	11835		14.838	10.894	1	4030300			682	5447	398	400	694	694					-0.03403665033329162
AEAVAHFEA	9	Unmodified	_AEAVAHFEA_					0	0	0		FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant;FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46	FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant	FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.7272644042969	2	472.727249	943.439946	0.10413	4.9223E-05	0.44355	0.00020968	0.54768	0.0002589	472.72740321908	32.42	0.26007	32.19	32.046	32.306	-0.23009					9	4	3	0	0	0	0.35128	1	12011	12011		25.399	14.575	1	33889000			683	5447	398	400	695	695					-0.03403665033329162
AEAVAHFEA	9	Unmodified	_AEAVAHFEA_					0	0	0		FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant;FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46	FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant	FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	472.727294921875	2	472.727249	943.439946	0.24324	0.00011499	0.27997	0.00013235	0.52321	0.00024734	472.7272415801187	32.507	0.36472	32.228	31.994	32.358	-0.27841					9	6	2	0	0	0	0.14171	1	11923	11923		49.933	11.959	1	13870000			684	5447	398	400	696	696					-0.03403665033329162
AEAVAHFEA	9	Unmodified	_AEAVAHFEA_					0	0	0		FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant;FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46	FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant	FBXO46|p.R226H|1|0.32|ENSG00000177051|chr19:45712819-45712819|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	472.726806640625	2	472.727249	943.439946	0.28565	0.00013503	-0.4196	-0.00019836	-0.13395	-6.3323E-05	472.72700393456586	32.614	0.20773	32.234	32.105	32.312	-0.37924					6	3	2	0	0	0	0.23138	1	11895	11895		37.974	18.717	1	4262300			685	5447	398	400	697	697					-0.03403665033329162
AEAVARAEAA	10	Unmodified	_AEAVARAEAA_					0	0	0		LTBP4|p.P843Lfs*37|1|0.19|ENSG00000090006|chr19:40613089-40613089|C/-|frameshift_variant;LTBP4|p.P1326Hfs*103|1|0.2|ENSG00000090006|chr19:40624022-40624022|C/-|frameshift_variant;LTBP4|p.A1409Hfs*20|2|0.32|ENSG00000090006|chr19:40627006-40627006|C/-|frameshift_variant;ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4	LTBP4|p.P843Lfs*37|1|0.19|ENSG00000090006|chr19:40613089-40613089|C/-|frameshift_variant	LTBP4|p.P843Lfs*37|1|0.19|ENSG00000090006|chr19:40613089-40613089|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	479.7507629394531	2	479.751256	957.487959	0.18235	8.7483E-05	-0.6111	-0.00029318	-0.42875	-0.00020569	479.75082921707946	19.855	0.20715	19.48	19.351	19.558	-0.37503					5	3	2	0	0	0	0.56431	1	6939	6939		30.703	5.3041	1	5327600			686	1535	399	401	698	698					0.007514088867083046
AEAVESAQA	9	Unmodified	_AEAVESAQA_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant;MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	HCT116MG_D190212_S3	3	875.41064453125	1	875.410502	874.403226	0.78654	0.00068855	-0.0020246	-1.7724E-06	0.78452	0.00068677	875.410247486349	19.56	0.20846	19.62	19.49	19.698	0.05983					5	3	2	0	0	0	0.066823	1	6744	6744		66.457	1.2217	1	3306100			687	1329	400	402	699	699					-0.038999616498927026
AEAVFASEV	9	Unmodified	_AEAVFASEV_					0	0	0		FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	922.4498291015625	1	922.451639	921.444362	0.82645	0.00076236	-0.63826	-0.00058876	0.18819	0.0001736	922.450326405883	43.684	0.36116	43.684	43.42	43.781	0					8	6	2	0	0	0	0.035349	1	16472	16472		81.89	25.713	1	15832000			688	1989	401	403	700	700					-0.019502006104175962
AEAVFASEV	9	Unmodified	_AEAVFASEV_					0	0	0		FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	922.4526977539062	1	922.451639	921.444362	1.1924	0.0010999	-0.3873	-0.00035726	0.80511	0.00074267	922.4511934465756	43.725	0.36014	43.647	43.453	43.813	-0.078373					15	6	3	0	0	0	0.069315	1	16586	16586		65.235	4.8455	1	76478000			689	1989	401	403	701	701					-0.019502006104175962
AEAVFASEV	9	Unmodified	_AEAVFASEV_					0	0	0		FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	922.4533081054688	1	922.451639	921.444362	0.94967	0.00087603	0.0046006	4.2438E-06	0.95428	0.00088027	922.4515998668866	43.951	0.46874	43.645	43.448	43.917	-0.30616					21	8	4	0	0	0	0.069315	1	16414	16414		65.235	4.8455	1	26822000			690	1989	401	403	702	702					-0.019502006104175962
AEAVFASEV	9	Unmodified	_AEAVFASEV_					0	0	0		FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	922.4525756835938	1	922.451639	921.444362	0.73365	0.00067676	0.065429	6.0355E-05	0.79908	0.00073711	922.4515253995959	44.023	0.36275	43.649	43.468	43.83	-0.37373					12	6	3	0	0	0	0.097615	1	16209	16209		58.679	14.272	1	12541000			691	1989	401	403	703	703					-0.019502006104175962
AEAVFSHS	8	Unmodified	_AEAVFSHS_					0	0	0			REV__ENST00000502311.1_1_4:493115-495466:+|nuORF	REV__ENST00000502311.1_1_4:493115-495466:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	424.2008056640625	2	424.200867	846.387182	0.20634	8.7528E-05	0.38685	0.0001641	0.59319	0.00025163	424.20086585536956	25.371	0.83302	25.264	24.787	25.62	-0.10618					39	15	3	0	0	0	0.60268	1	9006	9006		32.117	0	1	14113000	+		692	13472	402	404	704	704					-0.04215623096126819
AEAVGASRVV	10	Unmodified	_AEAVGASRVV_					0	0	0		nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	MSMS	HCT116MG_D190212_S3	3	479.7700500488281	2	479.769448	957.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.883	1	25.755	25.255	26.255	-0.12795								0	0	0	0.42226	1	9261	9261		51.63	3.8811	1				693	9675	403	405	705	705					0.0438828578344328
AEAVLKHIA	9	Unmodified	_AEAVLKHIA_					0	0	0		nc|ENSG00000033178|A0AVT1-3|UBA6;ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF	nc|ENSG00000033178|A0AVT1-3|UBA6	nc|ENSG00000033178|A0AVT1-3|UBA6	MULTI-MSMS	HCT116MG_D190212_S1	1	476.28460693359375	2	476.284734	950.554916	0.25809	0.00012293	-0.18508	-8.8149E-05	0.073018	3.4777E-05	476.2845306732233	27.93	0.20829	27.93	27.8	28.008	0					5	3	2	0	0	0	0.10244	1	10169	10169		57.722	25.416	1	5703600			694	974	404	406	706	706					0.07766064168470166
AEAVLKHIA	9	Unmodified	_AEAVLKHIA_					0	0	0		nc|ENSG00000033178|A0AVT1-3|UBA6;ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF	nc|ENSG00000033178|A0AVT1-3|UBA6	nc|ENSG00000033178|A0AVT1-3|UBA6	MULTI-MSMS	HCT116MG_D190212_S2	2	476.2848815917969	2	476.284734	950.554916	0.22265	0.00010605	-0.1	-4.763E-05	0.12265	5.8416E-05	476.2846398706099	28.473	0.36047	28.143	27.977	28.338	-0.32987					9	6	2	0	0	0	0.071914	1	10391	10391		63.961	35.474	1	42051000			695	974	404	406	707	707					0.07766064168470166
AEAVLKHIA	9	Unmodified	_AEAVLKHIA_					0	0	0		nc|ENSG00000033178|A0AVT1-3|UBA6;ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF	nc|ENSG00000033178|A0AVT1-3|UBA6	nc|ENSG00000033178|A0AVT1-3|UBA6	MULTI-MSMS	HCT116MG_D190212_S3	3	476.28497314453125	2	476.284734	950.554916	0.10962	5.2212E-05	0.060775	2.8946E-05	0.1704	8.1158E-05	476.28470892151125	28.252	0.41775	28.046	27.811	28.229	-0.20593					13	7	3	0	0	0	0.064006	1	10223	10223		67.838	35.533	1	22652000			696	974	404	406	708	708					0.07766064168470166
AEAVLKHIA	9	Unmodified	_AEAVLKHIA_					0	0	0		nc|ENSG00000033178|A0AVT1-3|UBA6;ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF	nc|ENSG00000033178|A0AVT1-3|UBA6	nc|ENSG00000033178|A0AVT1-3|UBA6	MULTI-MSMS	HCT116MG_D190212_S4	4	476.28466796875	2	476.284734	950.554916	0.47176	0.00022469	-0.13266	-6.3182E-05	0.3391	0.00016151	476.28452103318233	28.526	0.31167	28.194	28.012	28.324	-0.33138					8	5	2	0	0	0	0.10244	1	10283	10283		57.722	32.323	1	8909900			697	974	404	406	709	709					0.07766064168470166
AEAVLREH	8	Unmodified	_AEAVLREH_					0	0	0		ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	MULTI-MSMS	HCT116MG_D190212_S2	2	462.74847412109375	2	462.748516	923.482479	0.11749	5.4367E-05	0.045469	2.1041E-05	0.16295	7.5407E-05	462.74846311335267	19.974	1.0996	19.599	19.403	20.502	-0.37503					49	20	4	0	0	0	0.10976	2	6935	6935;7171		92.822	7.1806	1	43195000			698	4636	405	407	710;711	710					0.01767730094900344
AEAVQRVRA	9	Unmodified	_AEAVQRVRA_					0	0	0		NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	500.2889099121094	2	500.28834	998.562127	0.40569	0.00020296	0.31627	0.00015823	0.72196	0.00036119	500.28854766190875	19.283	0.20834	18.914	18.784	18.992	-0.3695					5	3	2	0	0	0	0.05892	1	6685	6685		70.332	26.56	1	14356000			699	4758	406	408	712	712					0.06278796768901884
AEAVQRVRA	9	Unmodified	_AEAVQRVRA_					0	0	0		NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	NOL6|p.Q953Kfs*32|4|0.2|ENSG00000165271|chr9:33464084-33464084|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	500.71142578125	2	500.28834	998.562127	0.34325	0.00017172	0.63453	0.00031745	0.97778	0.00048917	500.28875406464505	18.102	0.20778	18.179	18.049	18.257	0.076334					5	3	2	0	0	0	0.20204	1	6132	6132		28.495	5.8364	1	2935500			700	4758	406	408	713	713					0.06278796768901884
AEAVRPHSA	9	Unmodified	_AEAVRPHSA_					0	0	0		nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-MSMS	HCT116MG_D190212_S1	1	469.2461242675781	2	469.246141	936.477728	0.29459	0.00013824	-0.19765	-9.2748E-05	0.096937	4.5487E-05	469.24601943336853	15.249	0.26105	15.249	15.118	15.38	0					9	4	3	0	0	0	0.0035136	1	5056	5056		168.54	109.86	1	35879000			701	5028	407	409	714	714					0.006948459521481709
AEAVRPHSA	9	Unmodified	_AEAVRPHSA_					0	0	0		nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-MSMS	HCT116MG_D190212_S2	2	469.2452697753906	2	469.246141	936.477728	0.090458	4.2447E-05	0.16582	7.7809E-05	0.25628	0.00012026	469.2461079631303	11.575	0.41131	11.293	11.083	11.495	-0.28186					37	16	3	0	0	0	0.15281	2	3700	3700;3759		47.732	18.65	1	2216800			702	5028	407	409	715;716	715					0.006948459521481709
AEAVRPHSA	9	Unmodified	_AEAVRPHSA_					0	0	0		nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-MSMS	HCT116MG_D190212_S2	2	469.2462463378906	2	469.246141	936.477728	0.091532	4.2951E-05	0.055433	2.6012E-05	0.14697	6.8963E-05	469.24611340987934	15.268	0.62528	14.941	14.758	15.384	-0.32684					33	11	4	0	0	0	0.0035136	1	5042	5042		168.54	109.86	1	94043000			703	5028	407	409	717	717					0.006948459521481709
AEAVRPHSA	9	Unmodified	_AEAVRPHSA_					0	0	0		nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-MSMS	HCT116MG_D190212_S2	2	937.4857177734375	1	937.485005	936.477728	0.49969	0.00046846	0.32737	0.00030691	0.82707	0.00077536	937.4855947491933	15.268	0.20861	14.941	14.81	15.019	-0.32684					5	3	2	0	0	0	0.0035136	1	5067	5067		168.54	107.18	1	4246000			704	5028	407	409	718	718					0.006948459521481709
AEAYADLVKQA	11	Unmodified	_AEAYADLVKQA_					0	0	0		USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;USP11|p.L617Sfs*19|1|0.06|ENSG00000102226|chrX:47243528-47243528|C/-|frameshift_variant	USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant	USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	589.8069458007812	2	589.806228	1177.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.527	1	37.424	36.924	37.924	-0.10318								0	0	0	0.0031028	1	14069	14069		92.201	59.895	1				705	1831	408	410	719	719					0.016207894352419316
AEAYLGKTVT	10	Unmodified	_AEAYLGKTVT_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	HCT116MG_D190212_S1	1	526.7847290039062	2	526.784764	1051.55498	0.32663	0.00017206	-0.17393	-9.1625E-05	0.1527	8.0439E-05	527.2861695571	29.739	0.20753	29.739	29.633	29.841	0					5	3	2	0	0	0	0.42108	1	10907	10907		40.725	17.576	1	7450500			706	2228	409	411	720	720					0.031260193778280154
AEAYLGKTVT	10	Unmodified	_AEAYLGKTVT_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	HCT116MG_D190212_S2	2	526.784912109375	2	526.784764	1051.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.146	1	29.862	29.362	30.362	-0.28453								0	0	0	0.04361	1	11071	11071		112.04	47.805	1				707	2228	409	411	721	721					0.031260193778280154
AEAYLGKTVT	10	Unmodified	_AEAYLGKTVT_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7848510742188	2	526.784764	1051.55498	0.45679	0.00024063	-0.18541	-9.7671E-05	0.27138	0.00014296	526.7846355235655	30.193	0.31394	29.943	29.755	30.069	-0.24946					12	5	3	0	0	0	0.034465	1	10994	10994		98.73	58.491	1	29062000			708	2228	409	411	722	722					0.031260193778280154
AEAYLGKTVT	10	Unmodified	_AEAYLGKTVT_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	HCT116MG_D190212_S4	4	526.8084716796875	2	526.784764	1051.55498	0.37281	0.00019639	0.022179	1.1683E-05	0.39499	0.00020807	526.7845664610012	30.377	0.17184	30.019	29.857	30.029	-0.3571					5	3	2	0	0	0	0.043265	2	11008	10995;11008		92.201	54.025	1	11864000			709	2228	409	411	723;724	724					0.031260193778280154
AECAGPPVP	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))AGPPVP_	AEC(1)AGPPVP		AEC(57)AGPPVP		0	1	0		TTC1|p.E59Gfs*28|1|0.08|ENSG00000113312|chr5:160010704-160010707|AAGA/-|frameshift_variant;TTC1|p.N103Tfs*17|1|0.08|ENSG00000113312|chr5:160010830-160010830|A/-|frameshift_variant;ENSG00000113312|ENST00000231238|TTC1	TTC1|p.E59Gfs*28|1|0.08|ENSG00000113312|chr5:160010704-160010707|AAGA/-|frameshift_variant	TTC1|p.E59Gfs*28|1|0.08|ENSG00000113312|chr5:160010704-160010707|AAGA/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	449.2108154296875	2	449.210378	896.406203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.553	1	32.323	31.823	32.823	-0.23009								0	0	0	0.094981	1	12049	12049		57.471	23.284	1				710	2380	410	412	725	725	10				-0.04614409796738528
AECAGPPVP	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))AGPPVP_	AEC(1)AGPPVP		AEC(78)AGPPVP		0	1	0		TTC1|p.E59Gfs*28|1|0.08|ENSG00000113312|chr5:160010704-160010707|AAGA/-|frameshift_variant;TTC1|p.N103Tfs*17|1|0.08|ENSG00000113312|chr5:160010830-160010830|A/-|frameshift_variant;ENSG00000113312|ENST00000231238|TTC1	TTC1|p.E59Gfs*28|1|0.08|ENSG00000113312|chr5:160010704-160010707|AAGA/-|frameshift_variant	TTC1|p.E59Gfs*28|1|0.08|ENSG00000113312|chr5:160010704-160010707|AAGA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	449.2109069824219	2	449.210378	896.406203	0.16163	7.2606E-05	0.11891	5.3416E-05	0.28054	0.00012602	449.2104454663867	32.538	0.78115	32.26	31.89	32.671	-0.27841					28	14	3	0	0	0	0.043314	1	11904	11904		77.984	33.577	1	8867400			711	2380	410	412	726	726	10				-0.04614409796738528
AECAGPPVP	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))AGPPVP_	AEC(1)AGPPVP		AEC(67)AGPPVP		0	1	0		TTC1|p.E59Gfs*28|1|0.08|ENSG00000113312|chr5:160010704-160010707|AAGA/-|frameshift_variant;TTC1|p.N103Tfs*17|1|0.08|ENSG00000113312|chr5:160010830-160010830|A/-|frameshift_variant;ENSG00000113312|ENST00000231238|TTC1	TTC1|p.E59Gfs*28|1|0.08|ENSG00000113312|chr5:160010704-160010707|AAGA/-|frameshift_variant	TTC1|p.E59Gfs*28|1|0.08|ENSG00000113312|chr5:160010704-160010707|AAGA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	897.4134521484375	1	897.413479	896.406203	1.0386	0.00093206	-0.53968	-0.00048432	0.49893	0.00044774	897.4128664076882	32.524	0.67733	32.246	31.942	32.619	-0.27841					20	12	2	0	0	0	0.065014	1	11911	11911		67.344	41.003	1	3002600			712	2380	410	412	727	727	10				-0.04614409796738528
AECEEAEV	8	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))EEAEV_	AEC(1)EEAEV		AEC(74)EEAEV		0	1	0		WNK3|p.T541A|1|0.11|ENSG00000196632|chrX:54294625-54294625|T/C|missense_variant	WNK3|p.T541A|1|0.11|ENSG00000196632|chrX:54294625-54294625|T/C|missense_variant	WNK3|p.T541A|1|0.11|ENSG00000196632|chrX:54294625-54294625|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	468.684814453125	2	468.68439	935.354227	0.37415	0.00017536	0.2875	0.00013475	0.66166	0.00031011	468.68456917746414	30.031	0.31584	29.795	29.662	29.978	-0.23655					9	5	2	0	0	0	0.19622	1	10941	10941		74.396	38.352	1	7872300			713	18696	411	413	728	728	69				-0.1160361800116334
AECEKSFNC	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))EKSFNC_	AEC(1)EKSFNC		AEC(97)EKSFNC(-97)		0	1	0		ENSG00000170265|ENST00000610704|ZNF282	ENSG00000170265|ENST00000610704|ZNF282	ENSG00000170265|ENST00000610704|ZNF282	MULTI-MSMS	HCT116MG_D190212_S2	2	544.2129516601562	2	544.212792	1086.41103	0.4136	0.00022509	-0.15197	-8.2703E-05	0.26163	0.00014238	544.2125444437893	25.53	0.2091	25.161	25.03	25.239	-0.36914					6	3	2	0	0	0	0.0081783	1	9222	9222		117.84	73.979	2	18373000			714	5120	412	414	729	729	28				-0.12871893716283012
AECIPKTHE	9	Unmodified	_AECIPKTHE_					0	0	0		ENSG00000135447|ENST00000257905|PPP1R1A	ENSG00000135447|ENST00000257905|PPP1R1A	ENSG00000135447|ENST00000257905|PPP1R1A	MSMS	HCT116MG_D190212_S3	3	514.2498168945312	2	514.247492	1026.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.375	1	38.074	37.574	38.574	-0.30137								0	0	0	0.76759	1	14213	14213		9.3831	0.035688	1				715	3351	413	415	730	730					-0.03175066705193785
AECIPKTHE	9	Unmodified	_AECIPKTHE_					0	0	0		ENSG00000135447|ENST00000257905|PPP1R1A	ENSG00000135447|ENST00000257905|PPP1R1A	ENSG00000135447|ENST00000257905|PPP1R1A	MSMS	HCT116MG_D190212_S4	4	514.2496337890625	2	514.247492	1026.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.322	1	37.939	37.439	38.439	-0.38283								0	0	0	0.7663	1	14040	14040		13.906	3.0821	1				716	3351	413	415	731	731					-0.03175066705193785
AECNAVRQA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))NAVRQA_	AEC(1)NAVRQA		AEC(170)NAVRQA		0	1	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;nc|ENSG00000066032|P26232-5|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;CTNNA2|p.E411Kfs*4|1|0.19|ENSG00000066032|chr2:80419542-80419542|G/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;CTNNA2|p.V332M|1|0.36|ENSG00000066032|chr2:79909735-79909735|G/A|missense_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S1	1	509.7406311035156	2	509.740365	1017.46618	0.53213	0.00027125	-0.21535	-0.00010977	0.31678	0.00016148	509.74022500562626	17.176	0.26068	17.176	17.046	17.307	0					8	4	2	0	0	0	0.0035631	1	5830	5830		173.69	113.61	1	18804000			717	1019	414	416	732	732	4				-0.04185719133499788
AECNAVRQA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))NAVRQA_	AEC(1)NAVRQA		AEC(150)NAVRQA		0	1	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;nc|ENSG00000066032|P26232-5|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;CTNNA2|p.E411Kfs*4|1|0.19|ENSG00000066032|chr2:80419542-80419542|G/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;CTNNA2|p.V332M|1|0.36|ENSG00000066032|chr2:79909735-79909735|G/A|missense_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.740478515625	2	509.740365	1017.46618	0.3328	0.00016964	-0.17312	-8.8247E-05	0.15968	8.1395E-05	509.74033505684497	17.614	0.47001	17.258	17.075	17.545	-0.35647					25	8	4	0	0	0	0.0041644	1	6006	6006		148.27	98.714	1	114820000			718	1019	414	416	733	733	4				-0.04185719133499788
AECNAVRQA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))NAVRQA_	AEC(1)NAVRQA		AEC(190)NAVRQA		0	1	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;nc|ENSG00000066032|P26232-5|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;CTNNA2|p.E411Kfs*4|1|0.19|ENSG00000066032|chr2:80419542-80419542|G/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;CTNNA2|p.V332M|1|0.36|ENSG00000066032|chr2:79909735-79909735|G/A|missense_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	1018.4735107421875	1	1018.47345	1017.46618	0.76688	0.00078105	-0.87008	-0.00088615	-0.1032	-0.0001051	1018.4728504414285	17.562	0.20877	17.213	17.135	17.343	-0.34933					7	3	3	0	0	0	0.0019609	1	6010	6010		187.3	105.41	1	6973200			719	1019	414	416	734	734	4				-0.04185719133499788
AECNAVRQA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))NAVRQA_	AEC(1)NAVRQA		AEC(130)NAVRQA		0	1	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;nc|ENSG00000066032|P26232-5|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;CTNNA2|p.E411Kfs*4|1|0.19|ENSG00000066032|chr2:80419542-80419542|G/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;CTNNA2|p.V332M|1|0.36|ENSG00000066032|chr2:79909735-79909735|G/A|missense_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S3	3	509.7405700683594	2	509.740365	1017.46618	0.070361	3.5866E-05	0.3862	0.00019686	0.45656	0.00023273	509.74051263954	16.646	0.57239	16.731	16.549	17.121	0.085424					18	10	2	0	0	0	0.0055242	1	5560	5560		133.05	85.304	1	35871000			720	1019	414	416	735	735	4				-0.04185719133499788
AECNAVRQA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))NAVRQA_	AEC(1)NAVRQA		AEC(130)NAVRQA		0	1	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;nc|ENSG00000066032|P26232-5|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;CTNNA2|p.E411Kfs*4|1|0.19|ENSG00000066032|chr2:80419542-80419542|G/-|frameshift_variant;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;CTNNA2|p.V332M|1|0.36|ENSG00000066032|chr2:79909735-79909735|G/A|missense_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S4	4	509.7405090332031	2	509.740365	1017.46618	-0.29114	-0.0001484	0.44965	0.00022921	0.15851	8.0801E-05	509.74061437799793	16.904	0.31165	16.738	16.608	16.919	-0.16664					10	5	3	0	0	0	0.0055242	1	5590	5590		133.05	93.102	1	3828100			721	1019	414	416	736	736	4				-0.04185719133499788
AECNDESFWF	10	Unmodified	_AECNDESFWF_					0	0	0		ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;OCIAD1|p.E233Kfs*4|2|0.22|ENSG00000109180|chr4:48857355-48857355|A/-|frameshift_variant;ENSG00000109180|ENST00000264312|OCIAD1;ENST00000507546.5_1_4:48833247-48850510:+|nuORF	ENST00000512981.5_1_4:48833247-48854006:+|nuORF	ENST00000512981.5_1_4:48833247-48854006:+|nuORF	MSMS	HCT116MG_D190212_S2	2	624.2364501953125	2	624.237321	1246.46009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2392	1	5.091	4.591	5.591	-0.14816								0	0	0	0.96911	1	1654	1654		0.45834	0.057624	1				722	2198	415	417	737	737					-0.15328282155701345
AECPPPRQP	9	Unmodified	_AECPPPRQP_					0	0	0		nc|ENSG00000255529|Q6EEV4-2|POLR2M;ENST00000380557.4_2_15:57998925-58001412:+|nuORF;ENST00000567643.1_1_15:57998925-57999700:+|nuORF;ENST00000299638.7_2_15:57998859-58000941:+|nuORF;nc|ENSG00000255529|Q6EEV4|POLR2M	nc|ENSG00000255529|Q6EEV4-2|POLR2M	nc|ENSG00000255529|Q6EEV4-2|POLR2M	MULTI-MSMS	HCT116MG_D190212_S2	2	497.742431640625	2	497.742376	993.4702	0.33108	0.00016479	0.15552	7.7409E-05	0.4866	0.0002422	497.74236105996806	20.477	1.6182	20.098	19.398	21.016	-0.37949					66	30	3	0	0	0	0.0080847	2	7068	7068;7294		118.07	39.34	1	37365000			723	6991	416	418	738;739	738					-0.026796296397947117
AECPPPRQP	9	Unmodified	_AECPPPRQP_					0	0	0		nc|ENSG00000255529|Q6EEV4-2|POLR2M;ENST00000380557.4_2_15:57998925-58001412:+|nuORF;ENST00000567643.1_1_15:57998925-57999700:+|nuORF;ENST00000299638.7_2_15:57998859-58000941:+|nuORF;nc|ENSG00000255529|Q6EEV4|POLR2M	nc|ENSG00000255529|Q6EEV4-2|POLR2M	nc|ENSG00000255529|Q6EEV4-2|POLR2M	MULTI-MSMS	HCT116MG_D190212_S3	3	497.7425231933594	2	497.742376	993.4702	0.32555	0.00016204	0.087637	4.3621E-05	0.41318	0.00020566	497.74239339443545	19.74	1.6145	19.8	19.281	20.896	0.05983					60	30	3	0	0	0	0.0080847	2	6800	6800;7132		118.07	48.963	1	12296000			724	6991	416	418	740;741	740					-0.026796296397947117
AECPRAEEA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))PRAEEA_	AEC(1)PRAEEA		AEC(97)PRAEEA		0	1	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	HCT116MG_D190212_S3	3	516.724609375	2	516.724381	1031.43421	0.13015	6.7253E-05	0.18802	9.7153E-05	0.31817	0.00016441	516.7244179449908	16.594	0.46823	16.679	16.549	17.017	0.085424					15	8	3	0	0	0	0.019537	1	5521	5521		96.936	36.862	1	9340600			725	6087	417	419	742	742	37				-0.08025131607314506
AECPRAEEA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))PRAEEA_					0	1	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	516.724381	1031.43421	-0.22915	-0.00011841	0.55908	0.00028889	0.32993	0.00017048	516.7247427127796	16.894	0.15587	16.727	16.608	16.763	-0.16664	0.023912	0.00029996	NaN	96.936	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1572600			726	6087	417	419			37				-0.08025131607314506
AECQHAALP	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))QHAALP_	AEC(1)QHAALP		AEC(96)QHAALP		0	1	0		ENST00000377698.3_1_9:38392680-38395774:+|nuORF	ENST00000377698.3_1_9:38392680-38395774:+|nuORF	ENST00000377698.3_1_9:38392680-38395774:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7322692871094	2	498.732009	995.449465	0.50387	0.0002513	2.2911	0.0011427	2.795	0.001394	498.73290988622887	27.611	1.0324	27.269	26.881	27.914	-0.34201					49	19	3	0	0	0	0.020353	2	9949	9949;10187		96.111	31.875	1	149260000			727	7529	418	420	743;744	743	45				-0.048442200194585894
AECQHAALP	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))QHAALP_	AEC(1)QHAALP		AEC(86)QHAALP		0	1	0		ENST00000377698.3_1_9:38392680-38395774:+|nuORF	ENST00000377698.3_1_9:38392680-38395774:+|nuORF	ENST00000377698.3_1_9:38392680-38395774:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	498.7320251464844	2	498.732009	995.449465	0.48923	0.00024399	-0.13494	-6.7301E-05	0.35429	0.00017669	498.73191696762785	27.219	1.1971	27.05	26.807	28.004	-0.16933					61	22	4	0	0	0	0.030723	2	9781	9781;10010		85.642	30.868	1	31989000			728	7529	418	420	745;746	745	45				-0.048442200194585894
AECQHAALP	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))QHAALP_	AEC(1)QHAALP		AEC(100)QHAALP		0	1	0		ENST00000377698.3_1_9:38392680-38395774:+|nuORF	ENST00000377698.3_1_9:38392680-38395774:+|nuORF	ENST00000377698.3_1_9:38392680-38395774:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	498.7320251464844	2	498.732009	995.449465	0.4837	0.00024124	-0.1986	-9.9046E-05	0.2851	0.00014219	498.7319227012008	27.678	1.0813	27.357	26.888	27.97	-0.32157					38	20	2	0	0	0	0.01405	2	9846	9846;10087		103.35	39.117	1	9178100			729	7529	418	420	747;748	747	45				-0.048442200194585894
AECTGGHFCPQ	11	Unmodified	_AECTGGHFCPQ_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MSMS	HCT116MG_D190212_S1	1	575.226806640625	2	575.226233	1148.43791	0.38488	0.00022139	0.12501	7.191E-05	0.50989	0.0002933	575.2262286725152	18.376	0.20835	18.376	18.246	18.454	0					6	3	2	0	0	0	0.69138	1	6321	6321		24.991	6.8446	1	11813000	+		730	14188	419	421	749	749					-0.13036785105100535
AECTGGHFCPQ	11	Unmodified	_AECTGGHFCPQ_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MSMS	HCT116MG_D190212_S2	2	575.2258911132812	2	575.226233	1148.43791	0.19342	0.00011126	-0.20453	-0.00011765	-0.011105	-6.388E-06	575.2263824349769	19.023	0.52149	18.653	18.471	18.992	-0.3695					20	9	5	0	0	0	0.65047	1	6566	6566		29.841	3.5724	1	92943000	+		731	14188	419	421	750	750					-0.13036785105100535
AECTGGHFCPQ	11	Unmodified	_AECTGGHFCPQ_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MSMS	HCT116MG_D190212_S3	3	575.2264404296875	2	575.226233	1148.43791	0.27185	0.00015637	0.88414	0.00050858	1.156	0.00066495	575.2262989469482	17.895	0.31193	17.976	17.846	18.158	0.081358					13	5	4	0	0	0	0.69464	2	6065	6056;6065		23.79	2.2528	1	14573000	+		732	14188	419	421	751;752	752					-0.13036785105100535
AECTGGHFCPQ	11	Unmodified	_AECTGGHFCPQ_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	HCT116MG_D190212_S3	3	575.7282104492188	2	575.226233	1148.43791	0.27185	0.00015637	0.88414	0.00050858	1.156	0.00066495	575.2262989469482	17.895	0.31193	17.976	17.846	18.158	0.081358					13	5	4	0	0	0	0.33772	1	6056	6056		18.373	8.2992	1	14573000	+		733	14188	419	421	753	753					-0.13036785105100535
AECTGGHFCPQ	11	Unmodified	_AECTGGHFCPQ_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MSMS	HCT116MG_D190212_S4	4	575.2266845703125	2	575.226233	1148.43791	0.32602	0.00018753	0.11997	6.9012E-05	0.44599	0.00025654	575.2261976328415	18.252	0.20538	18.077	17.948	18.153	-0.17501					8	3	3	0	0	0	0.69464	1	6124	6124		23.79	9.8837	1	4475200	+		734	14188	419	421	754	754					-0.13036785105100535
AECTGGHFCPQ	11	Unmodified	_AECTGGHFCPQ_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	575.226233	1148.43791	0.38488	0.00022139	0.12501	7.191E-05	0.50989	0.0002933	575.2262286725152	18.376	0.20835	18.376	18.246	18.454	0	-0.13886	7.2089E-05	NaN	29.841	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11813000	+		735	14188	419	421							-0.13036785105100535
AECTGGHFCPQ	11	Unmodified	_AECTGGHFCPQ_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	575.226233	1148.43791	0.32602	0.00018753	0.11997	6.9012E-05	0.44599	0.00025654	575.2261976328415	18.252	0.20538	18.077	17.948	18.153	-0.17501	0.050716	-0.00013524	NaN	23.79	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4475200	+		736	14188	419	421							-0.13036785105100535
AECTLKESA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))TLKESA_	AEC(1)TLKESA		AEC(100)TLKESA		0	1	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;ENST00000505328.1_1_4:108991620-108999477:-|nuORF;CHD7-TCF7L2|5|fusion;VTI1A-TCF7L2|9|fusion;VTI1A-TCF7L2|2|fusion;VTI1A-TCF7L2|5|fusion;CHD7-TCF7L2|3|fusion;CHD7-TCF7L2|1|fusion;CHD7-TCF7L2|7|fusion;CHD7-TCF7L2|4|fusion;CHD7-TCF7L2|6|fusion;CHD7-TCF7L2|8|fusion;CHD7-TCF7L2|2|fusion;ENST00000514444.5_1_4:108996615-108999477:-|nuORF;ENSG00000138795|ENST00000265165|LEF1;VTI1A-TCF7L2|8|fusion;nc|ENSG00000138795|Q9UJU2-3|LEF1;VTI1A-TCF7L2|4|fusion;ENST00000524342.5_1_5:133476457-133478640:+|nuORF;ENST00000503879.5_1_4:108969658-108999477:-|nuORF;ENST00000519238.1_1_5:133477768-133481991:+|nuORF;nc|ENSG00000081059|P36402-10|TCF7;nc|ENSG00000081059|P36402-14|TCF7;nc|ENSG00000081059|P36402-16|TCF7;ENST00000522653.5_1_5:133451068-133478640:+|nuORF;nc|ENSG00000081059|P36402-8|TCF7;nc|ENSG00000081059|P36402-6|TCF7;nc|ENSG00000081059|P36402-2|TCF7;nc|ENSG00000138795|Q9UJU2-7|LEF1;nc|ENSG00000148737|Q9NQB0-17|TCF7L2;nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;VTI1A-TCF7L2|3|fusion;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000138795|Q9UJU2-5|LEF1;VTI1A-TCF7L2|1|fusion;VTI1A-TCF7L2|7|fusion;nc|ENSG00000081059|P36402-7|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402|TCF7;nc|ENSG00000138795|Q9UJU2-6|LEF1;VTI1A-TCF7L2|6|fusion;CHD7-TCF7L2|9|fusion;ENSG00000152284|ENST00000282111|TCF7L1;nc|ENSG00000081059|P36402-12|TCF7;nc|ENSG00000081059|P36402-4|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7	nc|ENSG00000148737|Q9NQB0-9|TCF7L2;ENSG00000152284|ENST00000282111|TCF7L1;nc|ENSG00000081059|P36402-12|TCF7	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MULTI-MSMS	HCT116MG_D190212_S2	2	504.73699951171875	2	504.736957	1007.45936	0.46731	0.00023587	0.11221	5.6637E-05	0.57952	0.00029251	504.7368894090964	20.903	0.26016	20.52	20.39	20.651	-0.38288					11	4	3	0	0	0	0.0158	1	7332	7332		100.71	11.755	1	31184000			737	4033;4146;9387	420	422	755	755	22				-0.04407076804739063
AECTLKESA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))TLKESA_	AEC(1)TLKESA		AEC(140)TLKESA		0	1	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;ENST00000505328.1_1_4:108991620-108999477:-|nuORF;CHD7-TCF7L2|5|fusion;VTI1A-TCF7L2|9|fusion;VTI1A-TCF7L2|2|fusion;VTI1A-TCF7L2|5|fusion;CHD7-TCF7L2|3|fusion;CHD7-TCF7L2|1|fusion;CHD7-TCF7L2|7|fusion;CHD7-TCF7L2|4|fusion;CHD7-TCF7L2|6|fusion;CHD7-TCF7L2|8|fusion;CHD7-TCF7L2|2|fusion;ENST00000514444.5_1_4:108996615-108999477:-|nuORF;ENSG00000138795|ENST00000265165|LEF1;VTI1A-TCF7L2|8|fusion;nc|ENSG00000138795|Q9UJU2-3|LEF1;VTI1A-TCF7L2|4|fusion;ENST00000524342.5_1_5:133476457-133478640:+|nuORF;ENST00000503879.5_1_4:108969658-108999477:-|nuORF;ENST00000519238.1_1_5:133477768-133481991:+|nuORF;nc|ENSG00000081059|P36402-10|TCF7;nc|ENSG00000081059|P36402-14|TCF7;nc|ENSG00000081059|P36402-16|TCF7;ENST00000522653.5_1_5:133451068-133478640:+|nuORF;nc|ENSG00000081059|P36402-8|TCF7;nc|ENSG00000081059|P36402-6|TCF7;nc|ENSG00000081059|P36402-2|TCF7;nc|ENSG00000138795|Q9UJU2-7|LEF1;nc|ENSG00000148737|Q9NQB0-17|TCF7L2;nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;VTI1A-TCF7L2|3|fusion;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000138795|Q9UJU2-5|LEF1;VTI1A-TCF7L2|1|fusion;VTI1A-TCF7L2|7|fusion;nc|ENSG00000081059|P36402-7|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402|TCF7;nc|ENSG00000138795|Q9UJU2-6|LEF1;VTI1A-TCF7L2|6|fusion;CHD7-TCF7L2|9|fusion;ENSG00000152284|ENST00000282111|TCF7L1;nc|ENSG00000081059|P36402-12|TCF7;nc|ENSG00000081059|P36402-4|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7	nc|ENSG00000148737|Q9NQB0-9|TCF7L2;ENSG00000152284|ENST00000282111|TCF7L1;nc|ENSG00000081059|P36402-12|TCF7	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MULTI-MSMS	HCT116MG_D190212_S3	3	504.7370300292969	2	504.736957	1007.45936	0.24322	0.00012276	0.29087	0.00014681	0.53409	0.00026958	504.73694975373735	20.237	0.36444	20.285	20.103	20.468	0.048107					15	6	3	0	0	0	0.0047539	1	6988	6988		139.78	50.828	1	28213000			738	4033;4146;9387	420	422	756	756	22				-0.04407076804739063
AECTLKESA	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))TLKESA_	AEC(1)TLKESA		AEC(97)TLKESA		0	1	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;ENST00000505328.1_1_4:108991620-108999477:-|nuORF;CHD7-TCF7L2|5|fusion;VTI1A-TCF7L2|9|fusion;VTI1A-TCF7L2|2|fusion;VTI1A-TCF7L2|5|fusion;CHD7-TCF7L2|3|fusion;CHD7-TCF7L2|1|fusion;CHD7-TCF7L2|7|fusion;CHD7-TCF7L2|4|fusion;CHD7-TCF7L2|6|fusion;CHD7-TCF7L2|8|fusion;CHD7-TCF7L2|2|fusion;ENST00000514444.5_1_4:108996615-108999477:-|nuORF;ENSG00000138795|ENST00000265165|LEF1;VTI1A-TCF7L2|8|fusion;nc|ENSG00000138795|Q9UJU2-3|LEF1;VTI1A-TCF7L2|4|fusion;ENST00000524342.5_1_5:133476457-133478640:+|nuORF;ENST00000503879.5_1_4:108969658-108999477:-|nuORF;ENST00000519238.1_1_5:133477768-133481991:+|nuORF;nc|ENSG00000081059|P36402-10|TCF7;nc|ENSG00000081059|P36402-14|TCF7;nc|ENSG00000081059|P36402-16|TCF7;ENST00000522653.5_1_5:133451068-133478640:+|nuORF;nc|ENSG00000081059|P36402-8|TCF7;nc|ENSG00000081059|P36402-6|TCF7;nc|ENSG00000081059|P36402-2|TCF7;nc|ENSG00000138795|Q9UJU2-7|LEF1;nc|ENSG00000148737|Q9NQB0-17|TCF7L2;nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;VTI1A-TCF7L2|3|fusion;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000138795|Q9UJU2-5|LEF1;VTI1A-TCF7L2|1|fusion;VTI1A-TCF7L2|7|fusion;nc|ENSG00000081059|P36402-7|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402|TCF7;nc|ENSG00000138795|Q9UJU2-6|LEF1;VTI1A-TCF7L2|6|fusion;CHD7-TCF7L2|9|fusion;ENSG00000152284|ENST00000282111|TCF7L1;nc|ENSG00000081059|P36402-12|TCF7;nc|ENSG00000081059|P36402-4|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7	nc|ENSG00000148737|Q9NQB0-9|TCF7L2;ENSG00000152284|ENST00000282111|TCF7L1;nc|ENSG00000081059|P36402-12|TCF7	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MULTI-MSMS	HCT116MG_D190212_S4	4	504.73712158203125	2	504.736957	1007.45936	0.2771	0.00013986	0.30043	0.00015164	0.57752	0.0002915	504.73692167683447	20.547	0.36391	20.345	20.196	20.56	-0.20133					11	6	3	0	0	0	0.019537	1	7057	7057		96.936	27.831	1	8877500			739	4033;4146;9387	420	422	757	757	22				-0.04407076804739063
AECTLKESA	9	Unmodified	_AECTLKESA_					0	0	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;ENST00000505328.1_1_4:108991620-108999477:-|nuORF;CHD7-TCF7L2|5|fusion;VTI1A-TCF7L2|9|fusion;VTI1A-TCF7L2|2|fusion;VTI1A-TCF7L2|5|fusion;CHD7-TCF7L2|3|fusion;CHD7-TCF7L2|1|fusion;CHD7-TCF7L2|7|fusion;CHD7-TCF7L2|4|fusion;CHD7-TCF7L2|6|fusion;CHD7-TCF7L2|8|fusion;CHD7-TCF7L2|2|fusion;ENST00000514444.5_1_4:108996615-108999477:-|nuORF;ENSG00000138795|ENST00000265165|LEF1;VTI1A-TCF7L2|8|fusion;nc|ENSG00000138795|Q9UJU2-3|LEF1;VTI1A-TCF7L2|4|fusion;ENST00000524342.5_1_5:133476457-133478640:+|nuORF;ENST00000503879.5_1_4:108969658-108999477:-|nuORF;ENST00000519238.1_1_5:133477768-133481991:+|nuORF;nc|ENSG00000081059|P36402-10|TCF7;nc|ENSG00000081059|P36402-14|TCF7;nc|ENSG00000081059|P36402-16|TCF7;ENST00000522653.5_1_5:133451068-133478640:+|nuORF;nc|ENSG00000081059|P36402-8|TCF7;nc|ENSG00000081059|P36402-6|TCF7;nc|ENSG00000081059|P36402-2|TCF7;nc|ENSG00000138795|Q9UJU2-7|LEF1;nc|ENSG00000148737|Q9NQB0-17|TCF7L2;nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;VTI1A-TCF7L2|3|fusion;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000138795|Q9UJU2-5|LEF1;VTI1A-TCF7L2|1|fusion;VTI1A-TCF7L2|7|fusion;nc|ENSG00000081059|P36402-7|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402|TCF7;nc|ENSG00000138795|Q9UJU2-6|LEF1;VTI1A-TCF7L2|6|fusion;CHD7-TCF7L2|9|fusion;ENSG00000152284|ENST00000282111|TCF7L1;nc|ENSG00000081059|P36402-12|TCF7;nc|ENSG00000081059|P36402-4|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7	nc|ENSG00000148737|Q9NQB0-9|TCF7L2;ENSG00000152284|ENST00000282111|TCF7L1;nc|ENSG00000081059|P36402-12|TCF7	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MSMS	HCT116MG_D190212_S3	3	476.2259521484375	2	476.226225	950.437897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.161	1	23.121	22.621	23.621	-0.03968								0	0	0	0.6691	1	8163	8163		20.581	1.3239	1				740	4033;4146;9387	420	423	758	758					-0.039304618334540464
AEDAVRGSPA	10	Unmodified	_AEDAVRGSPA_					0	0	0		ENST00000535024.5_3_12:11199749-11324198:-|nuORF	ENST00000535024.5_3_12:11199749-11324198:-|nuORF	ENST00000535024.5_3_12:11199749-11324198:-|nuORF	MSMS	HCT116MG_D190212_S4	4	486.7404479980469	2	486.740888	971.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.397	1	18.216	17.716	18.716	-0.18052								0	0	0	0.88085	1	6172	6172		18.373	2.5259	1				741	8659	421	424	759	759					-0.019651814929488864
AEDDDDSFP	9	Unmodified	_AEDDDDSFP_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MSMS	HCT116MG_D190212_S2	2	505.6846618652344	2	505.682901	1009.35125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.488	1	22.103	21.603	22.603	-0.3852								0	0	0	0.7689	1	7969	7969		4.756	1.8668	1				742	2155	422	425	760	760					-0.15305169854320866
AEDDLNTVA	9	Unmodified	_AEDDLNTVA_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	HCT116MG_D190212_S3	3	947.4320678710938	1	947.431632	946.424355	0.63652	0.00060306	-0.19311	-0.00018296	0.44341	0.0004201	947.4313170645265	31.096	0.36548	30.836	30.709	31.074	-0.26071					11	6	3	0	0	0	0.020181	1	11358	11358		96.285	25.151	1	5497400			743	5502	423	426	761	761					-0.050999963410276905
AEDDLNTVA	9	Unmodified	_AEDDLNTVA_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	HCT116MG_D190212_S4	4	947.4326171875	1	947.431632	946.424355	0.5067	0.00048007	0.032473	3.0766E-05	0.53918	0.00051083	947.4321849399936	31.16	0.20534	30.79	30.662	30.868	-0.37026					6	3	2	0	0	0	0.057285	1	11308	11308		71.134	22.788	1	4102600			744	5502	423	426	762	762					-0.050999963410276905
AEDDLNTVAA	10	Unmodified	_AEDDLNTVAA_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	HCT116MG_D190212_S2	2	1018.4706420898438	1	1018.46875	1017.46147	0.99169	0.00101	0.42923	0.00043716	1.4209	0.0014472	1018.4690897525285	31.629	0.25963	31.38	31.198	31.458	-0.24883					7	4	2	0	0	0	0.076419	1	11677	11677		78.728	30.979	1	27353000			745	5502	424	427	763	763					-0.04656324795269029
AEDDLNTVAA	10	Unmodified	_AEDDLNTVAA_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	HCT116MG_D190212_S3	3	1018.468505859375	1	1018.46875	1017.46147	0.56808	0.00057857	-0.022534	-2.295E-05	0.54554	0.00055562	1018.468666632465	31.726	0.36463	31.456	31.273	31.638	-0.27028					16	6	4	0	0	0	0.023158	1	11586	11586		114.65	35.921	1	24838000			746	5502	424	427	764	764					-0.04656324795269029
AEDDLNTVAA	10	Unmodified	_AEDDLNTVAA_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	HCT116MG_D190212_S3	3	509.7380676269531	2	509.738011	1017.46147	0.13811	7.0397E-05	0.17222	8.7785E-05	0.31032	0.00015818	509.7379666157344	31.719	0.2606	31.449	31.273	31.534	-0.27027					6	4	2	0	0	0	0.40515	1	11619	11619		41.84	14.956	1	6582100			747	5502	424	427	765	765					-0.04656324795269029
AEDDLNTVAA	10	Unmodified	_AEDDLNTVAA_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	HCT116MG_D190212_S4	4	1018.4696655273438	1	1018.46875	1017.46147	0.51447	0.00052397	0.35609	0.00036266	0.87056	0.00088664	1018.4686776167689	31.816	0.31144	31.441	31.226	31.538	-0.37529					9	5	2	0	0	0	0.023158	1	11557	11557		114.65	52.076	1	8367100			748	5502	424	427	766	766					-0.04656324795269029
AEDDRKAFA	9	Unmodified	_AEDDRKAFA_					0	0	0		KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant;ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	511.7489318847656	2	511.748713	1021.48287	0.4987	0.00025521	-0.40061	-0.00020501	0.098087	5.0196E-05	511.7483959429916	20.461	0.20848	20.461	20.331	20.54	0					6	3	2	0	0	0	0.019537	1	7159	7159		96.936	62.833	1	5219400			749	9260	425	428	767	767					-0.02700894975907886
AEDDRKAFA	9	Unmodified	_AEDDRKAFA_					0	0	0		KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant;ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	511.7490539550781	2	511.748713	1021.48287	0.24758	0.0001267	-0.2153	-0.00011018	0.032273	1.6516E-05	511.7486480679259	21.082	0.51865	20.699	20.443	20.961	-0.38288					21	9	4	0	0	0	0.20983	1	7461	7461		40.239	12.61	1	37137000			750	9260	425	428	768	768					-0.02700894975907886
AEDDRKAFA	9	Unmodified	_AEDDRKAFA_					0	0	0		KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant;ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	511.7486572265625	2	511.748713	1021.48287	0.088871	4.548E-05	0.31669	0.00016206	0.40556	0.00020754	511.74879765483234	20.133	1.0935	20.181	19.843	20.936	0.048107					24	20	2	0	0	0	0.10482	1	6968	6968		57.249	17.299	1	12022000			751	9260	425	428	769	769					-0.02700894975907886
AEDDVPRKA	9	Unmodified	_AEDDVPRKA_					0	0	0		nc|ENSG00000133142|Q96EI5-2|TCEAL4;ENSG00000133142|ENST00000472484|TCEAL4;TCEAL4|p.R128I|1|0.58|ENSG00000133142|chrX:103587058-103587058|G/T|missense_variant	nc|ENSG00000133142|Q96EI5-2|TCEAL4	nc|ENSG00000133142|Q96EI5-2|TCEAL4	MSMS	HCT116MG_D190212_S1	1	500.75689697265625	2	500.756538	999.498523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.769	1	16.769	16.269	17.269	0								0	0	0	0.27468	1	5665	5665		41.956	16.556	1				752	3232	426	429	770	770					-0.001246084588501617
AEDDVPRKA	9	Unmodified	_AEDDVPRKA_					0	0	0		nc|ENSG00000133142|Q96EI5-2|TCEAL4;ENSG00000133142|ENST00000472484|TCEAL4;TCEAL4|p.R128I|1|0.58|ENSG00000133142|chrX:103587058-103587058|G/T|missense_variant	nc|ENSG00000133142|Q96EI5-2|TCEAL4	nc|ENSG00000133142|Q96EI5-2|TCEAL4	MSMS	HCT116MG_D190212_S2	2	500.756591796875	2	500.756538	999.498523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.197	1	16.847	16.347	17.347	-0.34933								0	0	0	0.0001246	1	5838	5838		133.05	81.422	1				753	3232	426	429	771	771					-0.001246084588501617
AEDDVPRKA	9	Unmodified	_AEDDVPRKA_					0	0	0		nc|ENSG00000133142|Q96EI5-2|TCEAL4;ENSG00000133142|ENST00000472484|TCEAL4;TCEAL4|p.R128I|1|0.58|ENSG00000133142|chrX:103587058-103587058|G/T|missense_variant	nc|ENSG00000133142|Q96EI5-2|TCEAL4	nc|ENSG00000133142|Q96EI5-2|TCEAL4	MULTI-MSMS	HCT116MG_D190212_S3	3	500.75665283203125	2	500.756538	999.498523	0.39933	0.00019997	-0.11352	-5.6848E-05	0.28581	0.00014312	500.7564774806444	16.039	0.31197	16.125	15.977	16.289	0.085424					12	5	3	0	0	0	0.037825	1	5310	5310		80.676	36.818	1	6967700			754	3232	426	429	772	772					-0.001246084588501617
AEDEWKAQV	9	Unmodified	_AEDEWKAQV_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;NUMA1|p.R1215W|1|0.33|ENSG00000137497|chr11:72013860-72013860|G/A|missense_variant	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2567749023438	2	538.256371	1074.49819	0.24709	0.000133	-0.089113	-4.7965E-05	0.15797	8.5031E-05	538.2563171456324	34.763	0.20813	34.466	34.388	34.596	-0.29707					6	3	2	0	0	0	0.051033	1	12838	12838		74.2	20.367	1	4862100			755	3482	427	430	773	773					-0.03608028178700806
AEDEWKAQV	9	Unmodified	_AEDEWKAQV_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;NUMA1|p.R1215W|1|0.33|ENSG00000137497|chr11:72013860-72013860|G/A|missense_variant	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	538.256371	1074.49819	0.39983	0.00021521	0.18763	0.00010099	0.58747	0.00031621	538.2563818870934	34.881	0.15119	34.495	34.391	34.542	-0.38606	0.014566	0.00012711	NaN	74.2	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2384500			756	3482	427	430							-0.03608028178700806
AEDFTIFKA	9	Unmodified	_AEDFTIFKA_					0	0	0		ENSG00000163001|ENST00000349456|CFAP36;nc|ENSG00000163001|Q96G28-2|CFAP36	ENSG00000163001|ENST00000349456|CFAP36	ENSG00000163001|ENST00000349456|CFAP36	MULTI-MSMS	HCT116MG_D190212_S3	3	521.265380859375	2	521.266207	1040.51786	0.1972	0.0001028	-0.63266	-0.00032979	-0.43546	-0.00022699	521.265827029219	49.93	0.26096	49.615	49.446	49.707	-0.31525					7	4	2	0	0	0	0.16285	1	18821	18821		45.74	20.341	1	12561000			757	4573	428	431	774	774					-0.0007765216791995044
AEDFTIFKA	9	Unmodified	_AEDFTIFKA_					0	0	0		ENSG00000163001|ENST00000349456|CFAP36;nc|ENSG00000163001|Q96G28-2|CFAP36	ENSG00000163001|ENST00000349456|CFAP36	ENSG00000163001|ENST00000349456|CFAP36	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	521.266207	1040.51786	0.21172	0.00011036	-1.0839	-0.00056501	-0.87219	-0.00045465	521.2655426686657	49.928	0.22374	49.566	49.462	49.686	-0.36213	-0.024571	-4.4287E-05	NaN	45.74	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7602900			758	4573	428	431							-0.0007765216791995044
AEDKKTALP	9	Unmodified	_AEDKKTALP_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93;ENST00000460781.1_1_2:118709253-118753033:-|nuORF	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	HCT116MG_D190212_S3	3	486.77191162109375	2	486.771657	971.528761	0.14198	6.9113E-05	0.15585	7.5862E-05	0.29783	0.00014498	486.77169359411556	21.972	0.78156	21.973	21.729	22.511	0.00074577					24	14	2	0	0	0	0.17622	1	7642	7642		43.772	3.8227	1	4861200			759	2895	429	432	775	775					0.04185750206318062
AEDKRHYSV	9	Unmodified	_AEDKRHYSV_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S1	1	552.7758178710938	2	552.775262	1103.53597	0.62408	0.00034498	-0.093541	-5.1707E-05	0.53054	0.00029327	552.7752994070667	17.854	0.20853	17.854	17.724	17.933	0					6	3	2	0	0	0	0.47413	1	6131	6131		18.373	3.1246	1	5045800			760	5176	430	433	776	776					-0.01165517193226151
AEDKRHYSV	9	Unmodified	_AEDKRHYSV_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S2	2	552.7757568359375	2	552.775262	1103.53597	-0.12214	-6.7514E-05	0.66639	0.00036837	0.54426	0.00030085	552.7757981970719	18.607	0.25969	18.244	18.113	18.373	-0.36325					7	4	2	0	0	0	0.035298	1	6430	6430		81.915	60.378	1	25277000			761	5176	430	433	777	777					-0.01165517193226151
AEDKSWRV	8	Unmodified	_AEDKSWRV_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	HCT116MG_D190212_S1	1	495.75445556640625	2	495.753798	989.493044	0.62056	0.00030764	0.086579	4.2922E-05	0.70714	0.00035057	495.75383061581164	28.772	0.31491	28.772	28.588	28.903	0					9	5	2	0	0	0	0.22945	1	10505	10505		67.838	31.794	1	9198500			762	2013	431	434	778	778					-0.0021228725065611798
AEDKSWRV	8	Unmodified	_AEDKSWRV_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	HCT116MG_D190212_S2	2	495.754150390625	2	495.753798	989.493044	0.54353	0.00026946	0.32195	0.00015961	0.86547	0.00042906	495.7536589442077	29.409	0.46339	29.108	28.929	29.392	-0.30095					15	8	3	0	0	0	0.02476	1	10757	10757		215.27	108.08	1	60393000			763	2013	431	434	779	779					-0.0021228725065611798
AEDKSWRV	8	Unmodified	_AEDKSWRV_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	HCT116MG_D190212_S3	3	495.7540283203125	2	495.753798	989.493044	0.42054	0.00020848	1.8937	0.0009388	2.3142	0.0011473	495.75523600812016	29.346	0.52126	29.124	28.942	29.463	-0.22195					14	9	2	0	0	0	0.12153	1	10659	10659		90.135	36.302	1	15066000			764	2013	431	434	780	780					-0.0021228725065611798
AEDLESHMQV	10	Unmodified	_AEDLESHMQV_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MSMS	HCT116MG_D190212_S3	3	579.7567749023438	2	579.75842	1157.50229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.333	1	15.417	14.917	15.917	0.083271								0	0	0	0.95648	1	5009	5009		3.2813	0	1				765	1861	432	435	781	781					-0.07016306747323142
AEDLIVTP	8	Unmodified	_AEDLIVTP_					0	0	0		nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A;PDE4A|p.K310Nfs*29|1|0.45|ENSG00000065989|chr19:10457927-10457927|A/-|frameshift_variant	nc|ENSG00000065989|P27815-6|PDE4A	nc|ENSG00000065989|P27815-6|PDE4A	MSMS	HCT116MG_D190212_S4	4	429.088623046875	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.582	1	25.3	24.8	25.8	-0.28162								0	0	0	0.8837	1	9072	9072		13.508	2.3934	1				766	1165	433	436	782	782					0.02022987394957454
AEDLNLLIA	9	Unmodified	_AEDLNLLIA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	971.5410766601562	1	971.540788	970.533512	0.70245	0.00068246	0.063138	6.1341E-05	0.76559	0.0007438	971.5407070432736	55.799	0.31166	55.613	55.327	55.639	-0.18565					6	5	2	0	0	0	0.055677	1	21524	21524		71.922	6.6873	1	74357000			767	4969	434	437	783	783					0.04706634349099659
AEDLNLLIA	9	Unmodified	_AEDLNLLIA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S4	4	971.5411987304688	1	971.540788	970.533512	0.71581	0.00069544	-0.052026	-5.0545E-05	0.66379	0.0006449	971.5407553677243	55.901	0.21135	55.589	55.506	55.718	-0.312					7	3	3	0	0	0	0.023938	1	20964	20964		92.491	20.569	1	7087900			768	4969	434	437	784	784					0.04706634349099659
AEDLNTRVA	9	Unmodified	_AEDLNTRVA_					0	0	0		ENST00000514548.1_1_5:114952016-114952166:-|nuORF;ENST00000503010.1_1_5:114951908-114961566:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	494.7565612792969	2	494.756538	987.498523	0.36077	0.00017849	-0.041665	-2.0614E-05	0.31911	0.00015788	494.756528535795	25.388	0.78094	25.282	25.048	25.829	-0.10618					34	14	3	0	0	0	0.0034865	1	9041	9041		165.72	76.766	1	473390000			769	3318	435	438	785	785					0.004273915411545204
AEDLNTRVA	9	Unmodified	_AEDLNTRVA_					0	0	0		ENST00000514548.1_1_5:114952016-114952166:-|nuORF;ENST00000503010.1_1_5:114951908-114961566:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	988.5059814453125	1	988.5058	987.498523	0.82634	0.00081684	-0.087984	-8.6973E-05	0.73836	0.00072987	988.5055338759579	25.388	0.25986	25.282	25.152	25.412	-0.10618					10	4	3	0	0	0	0.0035894	1	9066	9066		176.43	83.774	1	25123000			770	3318	435	438	786	786					0.004273915411545204
AEDLNTRVA	9	Unmodified	_AEDLNTRVA_					0	0	0		ENST00000514548.1_1_5:114952016-114952166:-|nuORF;ENST00000503010.1_1_5:114951908-114961566:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	988.5074462890625	1	988.5058	987.498523	0.70476	0.00069666	-0.063754	-6.3021E-05	0.641	0.00063364	988.5058160973257	25.572	0.2601	25.292	25.162	25.422	-0.27958					9	4	3	0	0	0	0.0034669	1	9077	9077		163.69	90.719	1	10334000			771	3318	435	438	787	787					0.004273915411545204
AEDLNTRVA	9	Unmodified	_AEDLNTRVA_					0	0	0		ENST00000514548.1_1_5:114952016-114952166:-|nuORF;ENST00000503010.1_1_5:114951908-114961566:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	494.7566223144531	2	494.756538	987.498523	0.42131	0.00020845	-0.028532	-1.4117E-05	0.39278	0.00019433	494.7564712966213	25.572	0.5203	25.292	25.11	25.63	-0.27958					27	9	4	0	0	0	0.02327	1	9153	9153		93.166	18.237	1	191030000			772	3318	435	438	788	788					0.004273915411545204
AEDLNTRVA	9	Unmodified	_AEDLNTRVA_					0	0	0		ENST00000514548.1_1_5:114952016-114952166:-|nuORF;ENST00000503010.1_1_5:114951908-114961566:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	ENST00000514548.1_1_5:114952016-114952166:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	494.756538	987.498523	0.23715	0.00011733	0.64529	0.00031926	0.88244	0.00043659	494.7568550704666	25.634	0.72776	25.265	24.822	25.55	-0.36914	-0.0004428	0.00065668	NaN	165.72	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492660000			773	3318	435	438							0.004273915411545204
AEDLSHVA	8	Unmodified	_AEDLSHVA_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000565246.6_2_16:70277537-70279514:-|nuORF;ENST00000566127.1_1_16:29562517-29572889:-|nuORF;ENST00000523028.5_1_16:21912870-21927266:-|nuORF;ENST00000522841.6_1_16:21481075-21531198:-|nuORF	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENST00000522841.6_1_16:21481075-21531198:-|nuORF	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	421.2060546875	2	421.20615	840.397747	0.21274	8.9609E-05	0.013345	5.6211E-06	0.22609	9.523E-05	421.20602475563453	26.295	0.20846	26.146	26.046	26.255	-0.14924					7	3	3	0	0	0	0.31873	1	9451	9451		57.471	10.55	1	3244900			774	4314;8566	436	439	789	789					-0.02883640441712032
AEDPETQVV	9	Unmodified	_AEDPETQVV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2483825683594	2	494.235104	986.455655	0.47747	0.00023598	-0.12568	-6.2115E-05	0.35179	0.00017387	494.2350506331398	31.341	0.4641	31.093	30.786	31.25	-0.24883					12	8	2	0	0	0	0.23138	1	11495	11495		37.974	19.839	1	7000200			775	3460	437	440	790	790					-0.03811423306933648
AEDPETQVV	9	Unmodified	_AEDPETQVV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S3	3	494.2353820800781	2	494.235104	986.455655	0.18996	9.3886E-05	0.18165	8.9779E-05	0.37162	0.00018367	494.2350985643058	31.42	0.57424	31.15	30.856	31.43	-0.27027					24	10	3	0	0	0	0.055677	1	11452	11452		71.922	31.965	1	10286000			776	3460	437	440	791	791					-0.03811423306933648
AEDPETQVV	9	Unmodified	_AEDPETQVV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S4	4	494.23516845703125	2	494.235104	986.455655	0.19842	9.8065E-05	0.040765	2.0148E-05	0.23918	0.00011821	494.235161159033	31.512	0.36383	31.142	30.919	31.283	-0.37027					10	6	2	0	0	0	0.035349	1	11425	11425		81.89	33.544	1	6607600			777	3460	437	440	792	792					-0.03811423306933648
AEDPGPAVA	9	Unmodified	_AEDPGPAVA_					0	0	0		nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	MULTI-MSMS	HCT116MG_D190212_S3	3	826.3950805664062	1	826.394124	825.386848	0.93147	0.00076976	-0.22881	-0.00018908	0.70267	0.00058068	826.3936687143258	24.748	0.52063	24.665	24.497	25.018	-0.083693					13	9	2	0	0	0	0.011506	1	8801	8801		109.63	58.774	1	4195300			778	2792	438	441	793	793					-0.03283042816008219
AEDPGPAVA	9	Unmodified	_AEDPGPAVA_					0	0	0		nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	MULTI-MSMS	HCT116MG_D190212_S4	4	826.3936157226562	1	826.394124	825.386848	0.97636	0.00080686	0.26005	0.0002149	1.2364	0.0010218	826.393982930905	24.931	0.51947	24.662	24.393	24.913	-0.26881					13	9	2	0	0	0	0.035914	1	8788	8788		81.613	43.462	1	1948600			779	2792	438	441	794	794					-0.03283042816008219
AEDPGSAGEAA	11	Unmodified	_AEDPGSAGEAA_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S3	3	487.25732421875	2	487.706711	973.398869	0.030373	1.4813E-05	-0.030992	-1.5115E-05	-0.00061937	-3.0207E-07	487.7067752145856	18.05	0.31201	18.127	17.997	18.309	0.076334					8	5	2	0	0	0	0.31512	1	6134	6134		62.573	20.733	1	1671600			780	5231	439	442	795	795					-0.0888947086347116
AEDPSQLP	8	Unmodified	_AEDPSQLP_					0	0	0		ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	856.4061279296875	1	856.404689	855.397412	0.85243	0.00073002	0.17329	0.0001484	1.0257	0.00087843	856.4047266818325	31.911	1.2978	31.67	31.207	32.505	-0.24043					41	24	2	0	0	0	0.15965	1	11687	11687		81.613	7.1903	1	22156000			781	3285	440	443	796	796					-0.03607060161550635
AEDPSQLP	8	Unmodified	_AEDPSQLP_					0	0	0		ENST00000482943.1_1_1:201932715-201938679:+|nuORF;ENSG00000134375|ENST00000367287|TIMM17A	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	ENST00000482943.1_1_1:201932715-201938679:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	856.4048461914062	1	856.404689	855.397412	0.64853	0.00055541	0.22882	0.00019596	0.87736	0.00075137	856.4047334099719	31.902	1.2495	31.631	31.273	32.523	-0.27027					42	23	2	0	0	0	0.21275	2	11612	11612;11841		71.134	6.8973	1	6829400			782	3285	440	443	797;798	797					-0.03607060161550635
AEDRGTLSA	9	Unmodified	_AEDRGTLSA_					0	0	0		nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14	nc|ENSG00000087269|P78316-2|NOP14	nc|ENSG00000087269|P78316-2|NOP14	MULTI-MSMS	HCT116MG_D190212_S1	1	460.2279052734375	2	460.227613	918.440674	0.19388	8.9229E-05	0.061196	2.8164E-05	0.25508	0.00011739	460.2276366807711	21.111	0.37602	21.111	20.956	21.333	0					16	6	3	0	0	0	0.031831	1	7411	7411		84.522	30.689	1	17878000			783	1483	441	444	799	799					-0.021808703842793875
AEDRGTLSA	9	Unmodified	_AEDRGTLSA_					0	0	0		nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14	nc|ENSG00000087269|P78316-2|NOP14	nc|ENSG00000087269|P78316-2|NOP14	MULTI-MSMS	HCT116MG_D190212_S2	2	460.2277526855469	2	460.227613	918.440674	0.071382	3.2852E-05	0.55467	0.00025528	0.62606	0.00028813	460.22781224081444	21.526	0.57238	21.141	21.011	21.583	-0.38503					24	10	3	0	0	0	0.031831	1	7582	7582		84.522	32.892	1	133120000			784	1483	441	444	800	800					-0.021808703842793875
AEDRGTLSA	9	Unmodified	_AEDRGTLSA_					0	0	0		nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14	nc|ENSG00000087269|P78316-2|NOP14	nc|ENSG00000087269|P78316-2|NOP14	MULTI-MSMS	HCT116MG_D190212_S2	2	919.4482421875	1	919.44795	918.440674	0.67188	0.00061776	0.24822	0.00022823	0.9201	0.00084599	919.4479820903356	21.526	0.3119	21.141	21.011	21.323	-0.38503					13	5	3	0	0	0	0.0051419	1	7584	7584		136.39	60.631	1	48983000			785	1483	441	444	801	801					-0.021808703842793875
AEDRGTLSA	9	Unmodified	_AEDRGTLSA_					0	0	0		nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14	nc|ENSG00000087269|P78316-2|NOP14	nc|ENSG00000087269|P78316-2|NOP14	MULTI-MSMS	HCT116MG_D190212_S3	3	460.2279968261719	2	460.227613	918.440674	0.27877	0.0001283	0.50004	0.00023013	0.7788	0.00035843	460.22759017961477	20.914	0.94408	20.949	20.766	21.71	0.034473					53	17	4	0	0	0	0.022505	2	7241	7241;7478		93.938	36.216	1	154250000			786	1483	441	444	802;803	802					-0.021808703842793875
AEDRGTLSA	9	Unmodified	_AEDRGTLSA_					0	0	0		nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14	nc|ENSG00000087269|P78316-2|NOP14	nc|ENSG00000087269|P78316-2|NOP14	MULTI-MSMS	HCT116MG_D190212_S4	4	460.2278137207031	2	460.227613	918.440674	0.12929	5.9502E-05	1.0443	0.00048061	1.1736	0.00054011	460.22766356697775	21.25	0.88278	21.041	20.863	21.746	-0.20959					40	16	4	0	0	0	0.031831	2	7306	7306;7437		84.522	32.892	1	47572000			787	1483	441	444	804;805	804					-0.021808703842793875
AEDRGTLSA	9	Unmodified	_AEDRGTLSA_					0	0	0		nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14	nc|ENSG00000087269|P78316-2|NOP14	nc|ENSG00000087269|P78316-2|NOP14	MULTI-MSMS	HCT116MG_D190212_S4	4	919.4488525390625	1	919.44795	918.440674	0.76943	0.00070745	-0.027835	-2.5592E-05	0.74159	0.00068185	919.4477436817467	21.255	0.2597	21.045	20.863	21.123	-0.20959					10	4	3	0	0	0	0.0051419	1	7314	7314		136.39	60.631	1	9584000			788	1483	441	444	806	806					-0.021808703842793875
AEDRQVSITA	10	Unmodified	_AEDRQVSITA_					0	0	0		CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.Q326Pfs*22|1|0.17|ENSG00000132361|chr17:2700760-2700761|-/G|frameshift_variant;ENST00000571539.1_1_17:2604432-2604736:-|nuORF	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.28076171875	2	545.280377	1088.5462	0.63476	0.00034612	0.34135	0.00018613	0.9761	0.00053225	545.2804327194169	27.559	0.25883	27.217	27.088	27.347	-0.34201					8	4	2	0	0	0	0.048437	1	10026	10026		88.364	44.591	1	34601000			789	483	442	445	807	807					0.0054704574135939765
AEDRQVSITA	10	Unmodified	_AEDRQVSITA_					0	0	0		CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.Q326Pfs*22|1|0.17|ENSG00000132361|chr17:2700760-2700761|-/G|frameshift_variant;ENST00000571539.1_1_17:2604432-2604736:-|nuORF	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	545.2808837890625	2	545.280377	1088.5462	0.55869	0.00030464	0.23253	0.00012679	0.79122	0.00043144	545.2804802691159	27.467	0.41625	27.298	27.068	27.484	-0.16933					14	7	3	0	0	0	0.092421	1	9886	9886		75.571	39.064	1	17227000			790	483	442	445	808	808					0.0054704574135939765
AEDRQVSITA	10	Unmodified	_AEDRQVSITA_					0	0	0		CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.Q326Pfs*22|1|0.17|ENSG00000132361|chr17:2700760-2700761|-/G|frameshift_variant;ENST00000571539.1_1_17:2604432-2604736:-|nuORF	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	545.2805786132812	2	545.280377	1088.5462	0.55523	0.00030276	0.61812	0.00033705	1.1734	0.00063981	545.2808189382088	27.651	0.30204	27.33	27.148	27.45	-0.32157					8	5	2	0	0	0	0.18147	2	9899	9899;9914		61.09	18.777	1	6381100			791	483	442	445	809;810	809					0.0054704574135939765
AEDRRINVA	9	Unmodified	_AEDRRINVA_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	522.2835693359375	2	522.283254	1042.55196	0.23042	0.00012034	0.83637	0.00043682	1.0668	0.00055716	522.2833239268501	21.838	0.36435	21.453	21.219	21.583	-0.38503					10	6	2	0	0	0	0.02327	1	7716	7716		93.166	29.205	1	22339000			792	3206	443	446	811	811					0.03238189043690909
AEDRSLQAEP	10	Unmodified	_AEDRSLQAEP_					0	0	0		ENSG00000111816|ENST00000606080|FRK	ENSG00000111816|ENST00000606080|FRK	ENSG00000111816|ENST00000606080|FRK	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2698364257812	2	558.27001	1114.52547	0.3608	0.00020142	-0.48911	-0.00027306	-0.12831	-7.1631E-05	558.2697666653728	22.975	0.62378	22.59	22.154	22.778	-0.3852					16	11	2	0	0	0	0.16489	1	8114	8114		62.573	8.7399	1	8746100			793	2317	444	447	812	812					-0.02721544638325213
AEDRSLQAEP	10	Unmodified	_AEDRSLQAEP_					0	0	0		ENSG00000111816|ENST00000606080|FRK	ENSG00000111816|ENST00000606080|FRK	ENSG00000111816|ENST00000606080|FRK	MULTI-MSMS	HCT116MG_D190212_S3	3	558.2699584960938	2	558.27001	1114.52547	0.35412	0.0001977	-1.1616	-0.00064849	-0.80749	-0.0004508	558.2696726533935	22.405	0.52103	22.396	22.137	22.658	-0.0085945					16	9	2	0	0	0	0.37752	1	7859	7859		43.772	11.467	1	2332700			794	2317	444	447	813	813					-0.02721544638325213
AEDSTSRLSA	10	Unmodified	_AEDSTSRLSA_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MULTI-MSMS	HCT116MG_D190212_S3	3	518.7490844726562	2	518.74891	1035.48327	0.21089	0.0001094	-0.20255	-0.00010507	0.0083448	4.3289E-06	518.7489511449213	21.454	0.2646	21.472	21.377	21.641	0.018446					5	4	2	0	0	0	0.39092	1	7504	7504		42.835	42.835	1	2323300			795	3287	445	448	814	814					-0.033055200467060786
AEDVLSGKVSA	11	Unmodified	_AEDVLSGKVSA_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	HCT116MG_D190212_S2	2	538.228515625	2	538.285128	1074.5557	0.73349	0.00039483	0.23177	0.00012476	0.96527	0.00051959	538.2852105714272	33.03	0.2077	32.819	32.688	32.896	-0.21135					8	3	3	0	0	0	0.17693	2	12261	12261;12264		78.116	43.272	1	85361000			796	5377	446	449	815;816	815					0.0214081402687043
AEDVLSGKVSA	11	Unmodified	_AEDVLSGKVSA_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	HCT116MG_D190212_S4	4	538.28515625	2	538.285128	1074.5557	0.66149	0.00035607	0.23604	0.00012706	0.89753	0.00048313	538.2852449347321	33.244	0.40626	32.862	32.765	33.171	-0.38223					43	28	2	0	0	0	0.70059	1	12088	12088		21.59	6.3417	1	37037000			797	5377	446	449	817	817					0.0214081402687043
AEDVLSGKVSA	11	Unmodified	_AEDVLSGKVSA_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	538.285128	1074.5557	0.61897	0.00033318	0.60283	0.0003245	1.2218	0.00065768	538.2855100376665	33.189	0.2685	32.904	32.786	33.054	-0.28511	0.042376	0.00023641	NaN	78.116	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89257000			798	5377	446	449							0.0214081402687043
AEDWKQIAE	9	Unmodified	_AEDWKQIAE_					0	0	0			REV__TTC33|p.S187Vfs*7|1|0.35|ENSG00000113638|chr5:40716375-40716375|T/-|frameshift_variant	REV__TTC33|p.S187Vfs*7|1|0.35|ENSG00000113638|chr5:40716375-40716375|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	545.2623291015625	2	545.264196	1088.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.885	1	22.5	22	23	-0.3852								0	0	0	0.2496	1	8129	8129		43.772	1.8168	1		+		799	11490	447	450	818	818					-0.026877416616798655
AEDYGEHHLA	10	Unmodified	_AEDYGEHHLA_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	HCT116MG_D190212_S2	2	571.2496337890625	2	571.249077	1140.4836	0.54428	0.00031092	0.17879	0.00010213	0.72307	0.00041305	571.2489668079862	22.41	0.25894	22.025	21.895	22.154	-0.3852					10	4	3	0	0	0	0.0093752	1	7942	7942		152.41	114.44	1	36511000			800	1285	448	451	819	819					-0.08102100326846084
AEDYGEHHLA	10	Unmodified	_AEDYGEHHLA_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	HCT116MG_D190212_S2	2	381.16845703125	3	381.168477	1140.4836	0.025849	9.8528E-06	0.0076376	2.9112E-06	0.033487	1.2764E-05	381.1685611210304	22.41	0.25894	22.025	21.895	22.154	-0.3852					9	4	3	0	0	0	0.76634	1	7971	7971		8.9762	4.8596	1	12714000			801	1285	448	451	820	820					-0.08102100326846084
AEDYGEHHLA	10	Unmodified	_AEDYGEHHLA_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	HCT116MG_D190212_S3	3	381.16845703125	3	381.168477	1140.4836	-0.065426	-2.4938E-05	0.08902	3.3932E-05	0.023594	8.9933E-06	381.1685231264435	21.807	0.20896	21.808	21.677	21.886	0.00074577					6	3	2	0	0	0	0.40515	1	7624	7624		29.437	17.262	1	10699000			802	1285	448	451	821	821					-0.08102100326846084
AEDYGEHHLA	10	Unmodified	_AEDYGEHHLA_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	HCT116MG_D190212_S4	4	571.2493286132812	2	571.249077	1140.4836	0.6214	0.00035497	-0.22844	-0.0001305	0.39296	0.00022448	571.248990927073	22.137	0.20771	21.91	21.78	21.988	-0.22777					6	3	2	0	0	0	0.033024	1	7693	7693		99.799	69.162	1	6391100			803	1285	448	451	822	822					-0.08102100326846084
AEDYGEHHLA	10	Unmodified	_AEDYGEHHLA_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	HCT116MG_D190212_S4	4	381.16845703125	3	381.168477	1140.4836	0.057074	2.1755E-05	-0.023358	-8.9032E-06	0.033716	1.2852E-05	381.1683810443503	22.137	0.20771	21.91	21.78	21.988	-0.22777					5	3	2	0	0	0	0.81435	1	7710	7710		9.544	6.4717	1	4000200			804	1285	448	451	823	823					-0.08102100326846084
AEDYGEHHLA	10	Unmodified	_AEDYGEHHLA_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	571.249077	1140.4836	0.33092	0.00018904	0.23121	0.00013208	0.56213	0.00032112	571.2488867611097	21.88	0.15664	21.88	21.802	21.959	0	-0.025333	0.00032415	NaN	152.41	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3327000			805	1285	448	451							-0.08102100326846084
AEDYGEHHLA	10	Unmodified	_AEDYGEHHLA_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;LLGL2|p.V866I|1|0.79|ENSG00000073350|chr17:75573149-75573149|G/A|missense_variant;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	571.249077	1140.4836	0.47002	0.0002685	-0.096209	-5.496E-05	0.37381	0.00021354	571.2489835433638	21.807	0.26114	21.808	21.677	21.938	0.00074577	-0.097986	-4.9929E-05	NaN	152.41	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15560000			806	1285	448	451							-0.08102100326846084
AEEADLRRK	9	Unmodified	_AEEADLRRK_					0	0	0			REV__CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	REV__CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	544.2966918945312	2	544.296362	1086.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.597	1	15.27	14.77	15.77	-0.32684								0	0	0	0.76739	1	5193	5193		10.074	0	1		+		807	10163	449	452	824	824					0.038344582151466966
AEEAKSAIA	9	Unmodified	_AEEAKSAIA_					0	0	0		ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENST00000532461.5_1_11:110102596-110108435:-|nuORF;nc|ENSG00000137710|P35241-2|RDX;nc|ENSG00000137710|P35241-4|RDX	ENSG00000137710|ENST00000645495|RDX	ENSG00000137710|ENST00000645495|RDX	MSMS	HCT116MG_D190212_S2	2	445.2350769042969	2	445.234907	888.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.309	1	19.929	19.429	20.429	-0.37949								0	0	0	0.44802	1	7092	7092		31.268	0.6318	1				808	3495	450	453	825	825					0.006572017638632133
AEEALEEEAA	10	Unmodified	_AEEALEEEAA_					0	0	0			REV__ENSG00000277535|ENST00000620151|CT47C1	REV__ENSG00000277535|ENST00000620151|CT47C1	MULTI-MSMS	HCT116MG_D190212_S3	3	531.236328125	2	531.235301	1060.45605	0.40698	0.0002162	1.1432	0.00060732	1.5502	0.00082352	531.2357339811546	41.95	0.52177	41.647	41.415	41.936	-0.30257					17	10	2	0	0	0	0.72678	1	15580	15580		18.146	5.1039	1	4283100	+		809	14465	451	454	826	826					-0.07176048377732513
AEEALEEEAA	10	Unmodified	_AEEALEEEAA_					0	0	0			REV__ENSG00000277535|ENST00000620151|CT47C1	REV__ENSG00000277535|ENST00000620151|CT47C1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	531.235301	1060.45605	0.56234	0.00029873	1.3189	0.00070064	1.8812	0.00099937	531.7375888058637	41.726	0.41353	41.657	41.447	41.861	-0.068199	0.0050433	0.00011362	NaN	18.146	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8857300	+		810	14465	451	454							-0.07176048377732513
AEEALEEEAA	10	Unmodified	_AEEALEEEAA_					0	0	0			REV__ENSG00000277535|ENST00000620151|CT47C1	REV__ENSG00000277535|ENST00000620151|CT47C1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	531.235301	1060.45605	0.40698	0.0002162	1.1432	0.00060732	1.5502	0.00082352	531.2357339811546	41.95	0.52177	41.647	41.415	41.936	-0.30257	-0.0050433	-7.3032E-05	NaN	18.146	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4283100	+		811	14465	451	454							-0.07176048377732513
AEEAPGARP	9	Unmodified	_AEEAPGARP_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MSMS	HCT116MG_D190212_S1	1	449.224609375	2	449.224874	896.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.058	1	18.058	17.558	18.558	0								0	0	0	0.24841	1	6185	6185		43.858	3.901	1				812	6627	452	455	827	827					-0.017165491760920304
AEEAPGARP	9	Unmodified	_AEEAPGARP_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	HCT116MG_D190212_S2	2	449.2247619628906	2	449.224874	896.435195	-0.21	-9.4337E-05	0.42728	0.00019195	0.21728	9.7609E-05	449.22496626651656	18.45	0.5742	18.087	17.695	18.269	-0.36325					16	10	2	0	0	0	0.012496	1	6325	6325		107.19	29.038	1	15296000			813	6627	452	455	828	828					-0.017165491760920304
AEEAPGARP	9	Unmodified	_AEEAPGARP_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	HCT116MG_D190212_S3	3	449.22430419921875	2	449.224874	896.435195	-0.22615	-0.00010159	0.18194	8.1731E-05	-0.044217	-1.9864E-05	449.2248600013356	17.582	0.72854	17.664	17.273	18.002	0.081358					27	13	3	0	0	0	0.13316	1	5879	5879		51.63	1.6968	1	15200000			814	6627	452	455	829	829					-0.017165491760920304
AEEAPPRQA	9	Unmodified	_AEEAPPRQA_					0	0	0		ENST00000468045.5_1_2:27357168-27357309:-|nuORF	ENST00000468045.5_1_2:27357168-27357309:-|nuORF	ENST00000468045.5_1_2:27357168-27357309:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	484.74359130859375	2	484.743431	967.472308	0.10361	5.0225E-05	0.085932	4.1655E-05	0.18954	9.188E-05	484.74346091984694	16.074	0.77994	16.159	15.977	16.757	0.085424					23	14	2	0	0	0	0.023778	2	5311	5311;5399		92.653	21.52	1	5271900			815	8123	453	456	830;831	830					-0.012728776303333689
AEEAPPRQA	9	Unmodified	_AEEAPPRQA_					0	0	0		ENST00000468045.5_1_2:27357168-27357309:-|nuORF	ENST00000468045.5_1_2:27357168-27357309:-|nuORF	ENST00000468045.5_1_2:27357168-27357309:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	484.74310302734375	2	484.743431	967.472308	-0.56509	-0.00027392	0.66409	0.00032191	0.099005	4.7992E-05	484.7435165064691	16.394	0.84463	16.231	15.922	16.766	-0.16364					22	16	2	0	0	0	0.055677	1	5338	5338		71.922	31.965	1	781100			816	8123	453	456	832	832					-0.012728776303333689
AEEARAGEH	9	Unmodified	_AEEARAGEH_					0	0	0			REV__ENSG00000196792|ENST00000357479|STRN3	REV__ENSG00000196792|ENST00000357479|STRN3	MSMS	HCT116MG_D190212_S2	2	485.2215270996094	2	485.222862	968.431172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.767	1	24.388	23.888	24.888	-0.37847								0	0	0	0.46109	1	8889	8889		30.637	0.41173	1		+		817	14047	454	457	833	833					-0.05430638669804466
AEEARQMAA	9	Unmodified	_AEEARQMAA_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;IPO5|p.V64A|1|0.21|ENSG00000065150|chr13:97985440-97985440|T/C|missense_variant	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	HCT116MG_D190212_S3	3	489.2314758300781	2	488.729466	975.444379	0.12663	6.1886E-05	0.14961	7.3117E-05	0.27623	0.000135	488.729518020329	18.603	0.36441	18.675	18.513	18.878	0.072006					9	6	2	0	0	0	0.030039	1	6338	6338		86.332	18.251	1	5374700			818	1150	455	458	834	834					-0.044325238820761115
AEEARQMAA	9	Unmodified	_AEEARQMAA_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;IPO5|p.V64A|1|0.21|ENSG00000065150|chr13:97985440-97985440|T/C|missense_variant	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MSMS	HCT116MG_D190212_S4	4	488.7303771972656	2	488.729466	975.444379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.945	1	18.759	18.259	19.259	-0.18674								0	0	0	0.24671	1	6393	6393		43.982	9.8794	1				819	1150	455	458	835	835					-0.044325238820761115
AEEDFYEKL	9	Unmodified	_AEEDFYEKL_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.S549Pfs*8|1|0.36|ENSG00000166508|chr7:100095422-100095422|G/-|frameshift_variant;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	HCT116MG_D190212_S2	2	572.2638549804688	2	572.263862	1142.51317	0.53365	0.00030539	-0.063043	-3.6077E-05	0.47061	0.00026931	572.2634463172626	43.557	0.30924	43.484	43.303	43.612	-0.073376					8	5	2	0	0	0	0.16285	1	16550	16550		45.74	16.658	1	16996000			820	4862	456	459	836	836					-0.05238581101366435
AEEDFYEKL	9	Unmodified	_AEEDFYEKL_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.S549Pfs*8|1|0.36|ENSG00000166508|chr7:100095422-100095422|G/-|frameshift_variant;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	HCT116MG_D190212_S3	3	572.2652587890625	2	572.263862	1142.51317	0.53768	0.00030769	0.19726	0.00011288	0.73494	0.00042058	572.2640351348657	43.82	0.2609	43.513	43.344	43.605	-0.30616					9	4	3	0	0	0	0.094138	1	16372	16372		59.368	24.967	1	4747100			821	4862	456	459	837	837					-0.05238581101366435
AEEDMPQRVV	10	Unmodified	_AEEDMPQRVV_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MSMS	HCT116MG_D190212_S3	3	587.2817993164062	2	587.282063	1172.54957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.764	1	31.494	30.994	31.994	-0.27028								0	0	0	0.82952	1	11617	11617		24.991	6.8446	1				822	3473	457	460	838	838					-0.029800274763147172
AEEDPPWAP	9	Unmodified	_AEEDPPWAP_					0	0	0		nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;ENST00000464761.1_1_2:204276063-204301494:+|nuORF	nc|ENSG00000138443|Q9NYB9-3|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	MULTI-MSMS	HCT116MG_D190212_S3	3	1011.4409790039062	1	1011.4418	1010.43453	0.63755	0.00064485	-0.33889	-0.00034276	0.29866	0.00030208	1011.4411669759081	45.381	0.41766	45.07	44.783	45.2	-0.31094					12	7	2	0	0	0	0.026974	1	16988	16988		89.427	55.239	1	3724200			823	3561	458	461	839	839					-0.07027388615813379
AEEDSGDMCD	10	Unmodified	_AEEDSGDMCD_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	HCT116MG_D190212_S3	3	536.1654663085938	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.38	1	22.381	21.881	22.881	0.00060844								0	0	0	0.96377	1	7849	7849		1.6526	0.96225	1		+		824	11761	459	462	840	840					-0.21549077329086685
AEEDSGDMCD	10	Unmodified	_AEEDSGDMCD_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	HCT116MG_D190212_S4	4	536.1655883789062	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.145	1	21.917	21.417	22.417	-0.22777								0	0	0	0.96377	1	7686	7686		1.6526	0.85899	1		+		825	11761	459	462	841	841					-0.21549077329086685
AEEDSGDMCD	10	Unmodified	_AEEDSGDMCD_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	HCT116MG_D190212_S4	4	536.1654663085938	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.519	1	43.145	42.645	43.645	-0.37433								0	0	0	0.96377	1	15999	15999		1.6526	1.6526	1		+		826	11761	459	462	842	842					-0.21549077329086685
AEEDVQGTQA	10	Unmodified	_AEEDVQGTQA_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;ENST00000523243.5_1_8:135490727-135577256:-|nuORF	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MSMS	HCT116MG_D190212_S3	3	524.2334594726562	2	524.233093	1046.45163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19	1	19.069	18.569	19.569	0.069159								0	0	0	0.53908	1	6488	6488		45.74	24.203	1				827	1177	460	463	843	843					-0.06973512800641402
AEEDVQGTQA	10	Unmodified	_AEEDVQGTQA_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;ENST00000523243.5_1_8:135490727-135577256:-|nuORF	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MSMS	HCT116MG_D190212_S4	4	524.2333984375	2	524.233093	1046.45163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.16	1	18.973	18.473	19.473	-0.18674								0	0	0	0.68912	1	6480	6480		38.176	21.233	1				828	1177	460	463	844	844					-0.06973512800641402
AEEEAQRANA	10	Unmodified	_AEEEAQRANA_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	HCT116MG_D190212_S2	2	544.7521362304688	2	544.751984	1087.48942	0.36299	0.00019774	0.69084	0.00037634	1.0538	0.00057408	544.7522930105285	14.851	0.4693	14.531	14.244	14.714	-0.31952					10	8	2	0	0	0	0.010123	1	4896	4896		148.27	59.314	1	3286700			829	1691;18247	461	464	845	845					-0.05083001815182797
AEEECDCLSP	10	Unmodified	_AEEECDCLSP_					0	0	0			REV__ENST00000525829.1_1_8:12225811-12225877:+|nuORF	REV__ENST00000525829.1_1_8:12225811-12225877:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	548.2021484375	2	548.202089	1094.38963	0.69449	0.00038072	0.38915	0.00021333	1.0836	0.00059405	548.202140583147	36.259	0.60677	35.873	35.673	36.28	-0.38558					25	11	3	0	0	0	0.86862	1	13262	13262		6.2058	0	1	8436200	+		830	15740	462	465	846	846					-0.15379323535648837
AEEEETSIKAA	11	Unmodified	_AEEEETSIKAA_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MSMS	HCT116MG_D190212_S1	1	589.2831420898438	2	589.282783	1176.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.796	1	22.796	22.296	23.296	0								0	0	0	0.90285	1	8088	8088		19.626	1.2529	1				831	6490	463	466	847	847					-0.030201149065533173
AEEEETSIKAA	11	Unmodified	_AEEEETSIKAA_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	HCT116MG_D190212_S2	2	589.2830200195312	2	589.282783	1176.55101	0.52497	0.00030936	0.14589	8.5969E-05	0.67086	0.00039533	589.2828659994459	23.137	0.20825	22.752	22.622	22.83	-0.3852					9	3	3	0	0	0	2.81E-05	1	8245	8245		165.58	123.63	1	32109000			832	6490	463	466	848	848					-0.030201149065533173
AEEEETSIKAA	11	Unmodified	_AEEEETSIKAA_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	HCT116MG_D190212_S3	3	589.2827758789062	2	589.282783	1176.55101	0.46297	0.00027282	0.1989	0.00011721	0.66187	0.00039003	589.282711990369	22.692	0.45603	22.673	22.543	22.999	-0.018869					16	8	3	0	0	0	0.00046842	2	7977	7969;7977		157.49	107.93	1	26541000			833	6490	463	466	849;850	850					-0.030201149065533173
AEEEETSIKAA	11	Unmodified	_AEEEETSIKAA_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	HCT116MG_D190212_S4	4	589.283203125	2	589.282783	1176.55101	0.48029	0.00028303	0.33632	0.00019819	0.81661	0.00048121	589.2829730832448	22.969	0.36576	22.731	22.55	22.916	-0.23758					12	6	3	0	0	0	0.025005	1	8019	8019		128.87	85.097	1	11136000			834	6490	463	466	851	851					-0.030201149065533173
AEEEETSIKAA	11	Unmodified	_AEEEETSIKAA_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MATCH	HCT116MG_D190212_S1	1		2	589.282783	1176.55101	0.59653	0.00035153	-0.39312	-0.00023166	0.20341	0.00011986	589.2826592108095	22.715	0.20835	22.715	22.585	22.793	0	-0.0030817	-0.00059791	NaN	165.58	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4713900			835	6490	463	466							-0.030201149065533173
AEEEGEDELE	10	Unmodified	_AEEEGEDELE_					0	0	0			REV__PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant	REV__PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	383.8199157714844	3	383.819179	1148.43571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.036	1	18.666	18.166	19.166	-0.3695								0	0	0	0.87399	1	6577	6577		12.175	3.8883	1		+		836	11592	464	467	852	852					-0.1325726382819994
AEEEGRKMAA	10	Unmodified	_AEEEGRKMAA_					0	0	0		ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENST00000590244.1_1_17:58543761-58603427:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	546.781005859375	2	546.26113	1090.50771	0.46317	0.00025301	-0.27545	-0.00015047	0.18772	0.00010255	546.2610840574592	16.72	0.52096	16.378	15.996	16.516	-0.34183					18	9	4	0	0	0	0.025294	1	5646	5646		110.79	54.616	1	27678000			837	9027	465	468	853	853					-0.03392583164827556
AEEEGVKMSA	10	Unmodified	_AEEEGVKMSA_					0	0	0		ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.2929077148438	2	525.742239	1049.46993	0.44688	0.00023495	-0.15116	-7.9472E-05	0.29572	0.00015547	525.7423020368959	25.321	0.26036	24.945	24.816	25.076	-0.37521					7	4	2	0	0	0	0.10502	1	9120	9120		94.909	41.505	1	10090000			838	5475	466	469	854	854					-0.05283094150308898
AEEEGVKMSA	10	Unmodified	_AEEEGVKMSA_					0	0	0		ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	525.74267578125	2	525.742239	1049.46993	0.47256	0.00024845	-0.076182	-4.0052E-05	0.39638	0.00020839	525.7420967376228	25.075	0.26089	24.969	24.839	25.1	-0.10618					9	4	3	0	0	0	0.021186	1	8947	8947		118.21	56.608	1	12602000			839	5475	466	469	855	855					-0.05283094150308898
AEEEGVKMSA	10	Unmodified	_AEEEGVKMSA_					0	0	0		ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.R303Kfs*10|1|0.3|ENSG00000177853|chr10:96157223-96157224|-/A|frameshift_variant;ZNF518A|p.N426Mfs*2|1|0.29|ENSG00000177853|chr10:96157595-96157595|A/-|frameshift_variant	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	525.7421264648438	2	525.742239	1049.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.319	1	25.04	24.54	25.54	-0.27958								0	0	0	0.19781	1	8966	8966		68.76	30.145	1				840	5475	466	469	856	856					-0.05283094150308898
AEEEKVLGETA	11	Unmodified	_AEEEKVLGETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S3	3	588.2935791015625	2	588.29315	1174.57175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.885	1	29.649	29.149	30.149	-0.23655								0	0	0	0.30665	1	10872	10872		59.013	26.975	1				841	3119	467	470	857	857					-0.008555245269008083
AEEEKVLGETA	11	Unmodified	_AEEEKVLGETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	588.2930297851562	2	588.29315	1174.57175	0.53319	0.00031367	0.34066	0.00020041	0.87384	0.00051407	588.29331784188	29.98	0.20801	29.623	29.493	29.701	-0.3571					5	3	2	0	0	0	0.54673	1	10856	10856		41.347	11.506	1	3138300			842	3119	467	470	858	858					-0.008555245269008083
AEEEKVLGETA	11	Unmodified	_AEEEKVLGETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH	HCT116MG_D190212_S2	2		2	588.29315	1174.57175	0.75478	0.00044403	0.038884	2.2875E-05	0.79367	0.00046691	588.2933777208301	29.719	0.20648	29.418	29.289	29.495	-0.30095	-0.10233	-0.00020791	NaN	41.347	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5885700			843	3119	467	470							-0.008555245269008083
AEEELEDDEAG	11	Unmodified	_AEEELEDDEAG_					0	0	0			REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	MULTI-MSMS	HCT116MG_D190212_S3	3	603.7373657226562	2	603.735862	1205.45717	0.28431	0.00017165	1.6205	0.00097833	1.9048	0.00115	603.736736038831	17.322	0.15631	17.403	17.325	17.482	0.081358					4	2	2	0	0	0	0.70073	1	5837	5837		21.537	1.1224	1	4924000	+		844	11364	468	471	859	859					-0.13733878799507693
AEEELEDDEAG	11	Unmodified	_AEEELEDDEAG_					0	0	0			REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	603.735862	1205.45717	0.28431	0.00017165	1.6205	0.00097833	1.9048	0.00115	603.736736038831	17.322	0.15631	17.403	17.325	17.482	0.081358	-0.077122	0.00073884	NaN	21.537	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4924000	+		845	11364	468	471							-0.13733878799507693
AEEELEDDEAG	11	Unmodified	_AEEELEDDEAG_					0	0	0			REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	603.735862	1205.45717	0.91509	0.00055247	0.7805	0.00047122	1.6956	0.0010237	603.73636475001	17.733	0.15566	17.558	17.428	17.584	-0.17501	0.077122	-0.00027539	NaN	21.537	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1334300	+		846	11364	468	471							-0.13733878799507693
AEEENFKKP	9	Unmodified	_AEEENFKKP_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	HCT116MG_D190212_S2	2	546.7715454101562	2	546.272021	1090.52949	0.41132	0.00022469	-3.0509	-0.0016666	-2.6396	-0.0014419	546.7714073212753	21.282	1.3078	20.899	19.862	21.169	-0.38288					75	24	6	0	0	0	0.0068642	3	7518	7243;7476;7518		121.35	71.792	1	572310000			847	2808	469	472	860;861;862	862					-0.012154551446201367
AEEENFKKP	9	Unmodified	_AEEENFKKP_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	HCT116MG_D190212_S2	2	364.51702880859375	3	364.517106	1090.52949	-0.24973	-9.1032E-05	-2.9389	-0.0010713	-3.1886	-0.0011623	364.8500413730993	21.285	0.88481	20.902	20.233	21.117	-0.38288					53	16	5	0	0	0	0.14171	1	7322	7322		38.615	22.049	1	170250000			848	2808	469	472	863	863					-0.012154551446201367
AEEENFKKP	9	Unmodified	_AEEENFKKP_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	HCT116MG_D190212_S3	3	546.272216796875	2	546.272021	1090.52949	0.3253	0.0001777	-0.25815	-0.00014102	0.067144	3.6679E-05	546.2720455245952	20.601	1.6142	20.636	19.517	21.131	0.034473					86	30	5	0	0	0	0.0035136	2	7051	6830;7051		168.54	103.3	1	180950000			849	2808	469	472	864;865	865					-0.012154551446201367
AEEENFKKP	9	Unmodified	_AEEENFKKP_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	HCT116MG_D190212_S3	3	364.51708984375	3	364.517106	1090.52949	-0.20114	-7.332E-05	-0.43823	-0.00015974	-0.63938	-0.00023306	364.51709205314125	20.602	1.2497	20.636	19.725	20.975	0.034473					74	23	5	0	0	0	0.14171	3	7093	6867;7093;7175		38.615	19.253	1	104780000			850	2808	469	472	866;867;868	867					-0.012154551446201367
AEEENFKKP	9	Unmodified	_AEEENFKKP_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MSMS	HCT116MG_D190212_S3	3	546.2717895507812	2	546.272021	1090.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.038	1	21.072	20.572	21.572	0.034473								0	0	0	0.5317	1	7310	7310		27.223	2.2323	1				851	2808	469	472	869	869					-0.012154551446201367
AEEENFKKP	9	Unmodified	_AEEENFKKP_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2723388671875	2	546.272021	1090.52949	0.54454	0.00029747	-0.019663	-1.0741E-05	0.52488	0.00028673	546.2719682274502	20.995	1.4027	20.785	19.72	21.123	-0.20959					74	26	4	0	0	0	0.0035136	2	7159	6924;7159		168.54	103.3	1	114650000			852	2808	469	472	870;871	871					-0.012154551446201367
AEEENFKKP	9	Unmodified	_AEEENFKKP_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	HCT116MG_D190212_S4	4	364.5169982910156	3	364.517106	1090.52949	0.01115	4.0644E-06	-0.14095	-5.138E-05	-0.1298	-4.7316E-05	364.5170140494465	20.995	1.0389	20.785	19.928	20.967	-0.20959					53	19	4	0	0	0	0.30117	2	7013	7013;7243		28.495	14.089	1	42101000			853	2808	469	472	872;873	872					-0.012154551446201367
AEEEPKLLA	9	Unmodified	_AEEEPKLLA_					0	0	0		ENSG00000149782|ENST00000279230|PLCB3;nc|ENSG00000149782|Q01970-2|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	MSMS	HCT116MG_D190212_S3	3	500.2713928222656	2	500.27149	998.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.513	1	36.211	35.711	36.711	-0.30113								0	0	0	0.22243	1	13494	13494		45.74	7.5643	1				854	4072	470	473	874	874					0.02910330486474777
AEEEPMDTSP	10	Unmodified	_AEEEPMDTSP_					0	0	0		POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	553.2990112304688	2	553.221336	1104.42812	0.30569	0.00016912	-0.097485	-5.3931E-05	0.20821	0.00011518	553.2215752689946	28.148	0.31274	27.942	27.707	28.02	-0.20593					7	5	2	0	0	0	0.27864	1	10166	10166		17.113	0	1	2017900			855	1100	471	474	875	875					-0.11991694629477934
AEEEPNRIP	9	Unmodified	_AEEEPNRIP_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	527.7626953125	2	527.76182	1053.50909	0.60065	0.000317	0.20158	0.00010639	0.80223	0.00042339	527.7617295127193	27.168	0.72837	26.816	26.659	27.388	-0.35254					23	13	2	0	0	0	0.053544	1	9886	9886		72.968	34.353	1	10217000			856	3473	472	475	876	876					-0.015526258044246788
AEEEPNRIP	9	Unmodified	_AEEEPNRIP_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-MSMS	HCT116MG_D190212_S3	3	527.76220703125	2	527.76182	1053.50909	0.46646	0.00024618	0.17337	9.1496E-05	0.63983	0.00033768	527.7617778862979	27.034	0.83304	26.865	26.651	27.484	-0.16933					29	15	2	0	0	0	0.0080847	1	9716	9716		118.07	58.7	1	10562000			857	3473	472	475	877	877					-0.015526258044246788
AEEEPNRIP	9	Unmodified	_AEEEPNRIP_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-MSMS	HCT116MG_D190212_S4	4	527.7614135742188	2	527.76182	1053.50909	0.48562	0.00025629	0.17811	9.3997E-05	0.66372	0.00035029	527.7616548352278	27.236	1.1853	26.925	26.69	27.876	-0.3114					39	22	2	0	0	0	0.071914	1	9736	9736		63.961	27.833	1	4861900			858	3473	472	475	878	878					-0.015526258044246788
AEEEPPTVTEP	11	Unmodified	_AEEEPPTVTEP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S2	2	599.7769165039062	2	599.777333	1197.54011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.663	1	31.414	30.914	31.914	-0.24883								0	0	0	0.58477	1	11688	11688		43.772	14.691	1				859	3119	473	476	879	879					-0.050755172808294446
AEEEPPTVTEP	11	Unmodified	_AEEEPPTVTEP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	599.775634765625	2	599.777333	1197.54011	0.49541	0.00029713	-0.214	-0.00012835	0.28141	0.00016878	599.7771112486134	31.9	0.46831	31.63	31.326	31.794	-0.27027					14	8	2	0	0	0	0.22179	1	11653	11653		72.968	45.339	1	3424100			860	3119	473	476	880	880					-0.050755172808294446
AEEEPRVAP	9	Unmodified	_AEEEPRVAP_					0	0	0		ENSG00000184144|ENST00000331830|CNTN2	ENSG00000184144|ENST00000331830|CNTN2	ENSG00000184144|ENST00000331830|CNTN2	MSMS	HCT116MG_D190212_S4	4	499.24853515625	2	499.251089	996.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.054	1	37.671	37.171	38.171	-0.38283								0	0	0	0.62451	1	13933	13933		22.736	0	1				861	5758	474	477	881	881					-0.010760108331396623
AEEEQRRLGA	10	Unmodified	_AEEEQRRLGA_					0	0	0		NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant;nc|ENSG00000073969|P46459-2|NSF;ENSG00000073969|ENST00000398238|NSF	NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant	NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	579.7971801757812	2	579.796726	1157.5789	0.38584	0.00022371	-0.29719	-0.00017231	0.088649	5.1398E-05	579.7968491491594	19.127	0.20823	18.758	18.68	18.888	-0.3695					6	3	2	0	0	0	0.51145	1	6644	6644		34.402	9.0024	1	8477000			862	1292	475	478	882	882					0.006412528641931203
AEEEQRRLGA	10	Unmodified	_AEEEQRRLGA_					0	0	0		NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant;nc|ENSG00000073969|P46459-2|NSF;ENSG00000073969|ENST00000398238|NSF	NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant	NSF|p.I556Lfs*18|1|0.09|ENSG00000073969|chr17:46713887-46713887|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	579.796726	1157.5789	0.4447	0.00025783	-0.04897	-2.8393E-05	0.39573	0.00022944	579.7968259658497	18.363	0.20856	18.439	18.309	18.518	0.076334	-0.15928	6.2451E-05	NaN	34.402	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5188600			863	1292	475	478							0.006412528641931203
AEEERLKAA	9	Unmodified	_AEEERLKAA_					0	0	0		ENST00000508837.1_1_5:169015420-169015759:+|nuORF;ENST00000510751.5_1_5:169015420-169022772:+|nuORF;nc|ENSG00000040275|Q96EA4-2|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;ENSG00000040275|ENST00000265295|SPDL1	ENST00000508837.1_1_5:169015420-169015759:+|nuORF	ENST00000508837.1_1_5:169015420-169015759:+|nuORF	MSMS	HCT116MG_D190212_S3	3	508.7720947265625	2	508.772188	1015.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.107	1	18.184	17.684	18.684	0.076334								0	0	0	0.04525	1	6128	6128		71.708	29.868	1				864	1000	476	479	883	883					0.022679645752305078
AEEERLKAA	9	Unmodified	_AEEERLKAA_					0	0	0		ENST00000508837.1_1_5:169015420-169015759:+|nuORF;ENST00000510751.5_1_5:169015420-169022772:+|nuORF;nc|ENSG00000040275|Q96EA4-2|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;ENSG00000040275|ENST00000265295|SPDL1	ENST00000508837.1_1_5:169015420-169015759:+|nuORF	ENST00000508837.1_1_5:169015420-169015759:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	508.7723388671875	2	508.772188	1015.52982	0.07805	3.971E-05	0.20554	0.00010457	0.28359	0.00014428	508.7722168393732	18.406	0.31075	18.225	18.097	18.407	-0.18052					6	5	2	0	0	0	0.23993	1	6204	6204		37.075	10.807	1	2029200			865	1000	476	479	884	884					0.022679645752305078
AEEERLRQEA	10	Unmodified	_AEEERLRQEA_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	HCT116MG_D190212_S2	2	615.8075561523438	2	615.807291	1229.60003	0.30251	0.00018629	-0.60222	-0.00037085	-0.29972	-0.00018457	615.8070162715071	20.271	0.2088	19.891	19.761	19.969	-0.37949					5	3	2	0	0	0	0.041584	1	7083	7083		93.448	21.74	1	14567000			866	2119	477	480	885	885					-0.005587818269532363
AEEERLRQEA	10	Unmodified	_AEEERLRQEA_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	HCT116MG_D190212_S3	3	615.8076782226562	2	615.807291	1229.60003	0.36408	0.0002242	0.036373	2.2399E-05	0.40045	0.0002466	615.8072119144648	19.422	0.31269	19.482	19.333	19.646	0.059828					8	5	2	0	0	0	0.065434	1	6676	6676		80.896	27.579	1	7707300			867	2119	477	480	886	886					-0.005587818269532363
AEEERLRQEA	10	Unmodified	_AEEERLRQEA_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	HCT116MG_D190212_S3	3	410.87396240234375	3	410.873953	1229.60003	0.016199	6.6556E-06	-0.35232	-0.00014476	-0.33612	-0.0001381	410.8739364382874	19.446	0.20841	19.506	19.386	19.594	0.05983					7	3	3	0	0	0	0.39092	1	6681	6681		32.518	8.5539	1	5599100			868	2119	477	480	887	887					-0.005587818269532363
AEEERLRQEA	10	Unmodified	_AEEERLRQEA_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	HCT116MG_D190212_S4	4	615.8078002929688	2	615.807291	1229.60003	0.62866	0.00038714	-0.073198	-4.5076E-05	0.55547	0.00034206	615.8072396331012	19.8	0.19824	19.606	19.486	19.684	-0.19367					8	3	3	0	0	0	0.019252	1	6742	6742		121.93	31.795	1	6364300			869	2119	477	480	888	888					-0.005587818269532363
AEEERLRQEA	10	Unmodified	_AEEERLRQEA_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MATCH	HCT116MG_D190212_S4	4		3	410.873953	1229.60003	0.12922	5.3092E-05	-0.02206	-9.0641E-06	0.10716	4.4028E-05	410.8739345257166	19.818	0.19824	19.624	19.486	19.684	-0.19367	0.059265	0.0001936	NaN	32.518	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1739100			870	2119	477	480							-0.005587818269532363
AEEERRIAA	9	Unmodified	_AEEERRIAA_					0	0	0		ENST00000515116.1_1_4:666291-667257:-|nuORF;ENSG00000169020|ENST00000304312|ATP5ME;ENST00000505852.1_1_4:666291-668103:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	522.7747192382812	2	522.775262	1043.53597	0.31464	0.00016448	0.1359	7.1043E-05	0.45053	0.00023553	522.7751675773039	18.533	0.26039	18.533	18.402	18.662	0					12	4	4	0	0	0	0.016412	1	6381	6381		100.09	56.318	1	21224000			871	5044	478	481	889	889					0.01594482806740416
AEEERRIAA	9	Unmodified	_AEEERRIAA_					0	0	0		ENST00000515116.1_1_4:666291-667257:-|nuORF;ENSG00000169020|ENST00000304312|ATP5ME;ENST00000505852.1_1_4:666291-668103:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	522.775390625	2	522.775262	1043.53597	0.34602	0.00018089	-0.086518	-4.5229E-05	0.2595	0.00013566	522.7751928302889	19.179	0.31251	18.81	18.68	18.992	-0.3695					18	5	4	0	0	0	0.0046822	1	6638	6638		140.63	68.711	1	163770000			872	5044	478	481	890	890					0.01594482806740416
AEEERRIAA	9	Unmodified	_AEEERRIAA_					0	0	0		ENST00000515116.1_1_4:666291-667257:-|nuORF;ENSG00000169020|ENST00000304312|ATP5ME;ENST00000505852.1_1_4:666291-668103:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1044.5439453125	1	1044.54325	1043.53597	0.71843	0.00075043	0.064593	6.747E-05	0.78302	0.0008179	1044.5430144120244	19.179	0.15602	18.81	18.732	18.888	-0.3695					4	2	2	0	0	0	0.0046822	1	6662	6662		140.63	78.06	1	7678300			873	5044	478	481	891	891					0.01594482806740416
AEEERRIAA	9	Unmodified	_AEEERRIAA_					0	0	0		ENST00000515116.1_1_4:666291-667257:-|nuORF;ENSG00000169020|ENST00000304312|ATP5ME;ENST00000505852.1_1_4:666291-668103:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	522.7755737304688	2	522.775262	1043.53597	0.21027	0.00010992	0.2362	0.00012348	0.44646	0.0002334	522.7753259925952	18.05	0.57271	18.127	17.997	18.57	0.076334					22	10	4	0	0	0	0.0059958	1	6107	6107		128.93	66.36	1	91949000			874	5044	478	481	892	892					0.01594482806740416
AEEERRIAA	9	Unmodified	_AEEERRIAA_					0	0	0		ENST00000515116.1_1_4:666291-667257:-|nuORF;ENSG00000169020|ENST00000304312|ATP5ME;ENST00000505852.1_1_4:666291-668103:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	ENST00000515116.1_1_4:666291-667257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	522.775390625	2	522.775262	1043.53597	0.25062	0.00013102	0.16551	8.6526E-05	0.41614	0.00021755	522.7753239815144	18.456	0.41478	18.276	18.097	18.511	-0.18051					19	7	4	0	0	0	0.012531	1	6184	6184		107.1	53.267	1	27312000			875	5044	478	481	893	893					0.01594482806740416
AEEERYFRA	9	Unmodified	_AEEERYFRA_					0	0	0		ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	MULTI-MSMS	HCT116MG_D190212_S2	2	585.7810668945312	2	585.780544	1169.54654	0.50119	0.00029359	0.056446	3.3065E-05	0.55764	0.00032665	585.7803532786655	29	0.20584	28.683	28.555	28.761	-0.31613					7	3	3	0	0	0	0.029255	1	10613	10613		103.82	63.874	1	44574000			876	3103	479	482	894	894					-0.03145534538816719
AEEERYFRA	9	Unmodified	_AEEERYFRA_					0	0	0		ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	MULTI-MSMS	HCT116MG_D190212_S3	3	391.19049072265625	3	390.856122	1169.54654	0.061587	2.4072E-05	-0.01581	-6.1795E-06	0.045777	1.7892E-05	390.8560111520658	29.001	0.2084	28.779	28.629	28.838	-0.22195					8	3	3	0	0	0	0.043159	1	10528	10528		78.06	50.972	1	6696200			877	3103	479	482	895	895					-0.03145534538816719
AEEERYFRA	9	Unmodified	_AEEERYFRA_					0	0	0		ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	MSMS	HCT116MG_D190212_S3	3	585.780517578125	2	585.780544	1169.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.006	1	28.784	28.284	29.284	-0.22195								0	0	0	0.04217	1	10520	10520		87.258	43.486	1				878	3103	479	482	896	896					-0.03145534538816719
AEEERYFRA	9	Unmodified	_AEEERYFRA_					0	0	0		ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	MULTI-MSMS	HCT116MG_D190212_S4	4	585.7807006835938	2	585.780544	1169.54654	0.4179	0.0002448	-0.43784	-0.00025648	-0.019939	-1.168E-05	585.7802543682618	29.148	0.2595	28.808	28.678	28.938	-0.34059					9	4	3	0	0	0	0.029255	1	10523	10523		103.82	63.874	1	7809900			879	3103	479	482	897	897					-0.03145534538816719
AEEERYFRA	9	Unmodified	_AEEERYFRA_					0	0	0		ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	ENSG00000130770|ENST00000335514|ATP5IF1	MULTI-MSMS	HCT116MG_D190212_S4	4	390.8562927246094	3	390.856122	1169.54654	0.056176	2.1957E-05	0.16009	6.2573E-05	0.21627	8.453E-05	390.85619085114723	29.148	0.20765	28.808	28.678	28.886	-0.34059					5	3	2	0	0	0	0.12465	1	10539	10539		53.317	53.317	1	4305600			880	3103	479	482	898	898					-0.03145534538816719
AEEETTNRP	9	Unmodified	_AEEETTNRP_					0	0	0		ENST00000582288.1_1_17:18684606-18692749:+|nuORF;nc|ENSG00000259024|Q96ET8-2|TVP23C;ENSG00000175106|ENST00000518321|TVP23C;ENSG00000171928|ENST00000307767|TVP23B;nc|ENSG00000259024|Q96ET8|TVP23C	ENST00000582288.1_1_17:18684606-18692749:+|nuORF	ENST00000582288.1_1_17:18684606-18692749:+|nuORF	MSMS	HCT116MG_D190212_S2	2	523.7412719726562	2	523.741085	1045.46762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.319	1	15.977	15.477	16.477	-0.34183								0	0	0	0.016874	1	5483	5483		96.367	32.406	1				881	5221	480	483	899	899					-0.05329806563759121
AEEETTNRP	9	Unmodified	_AEEETTNRP_					0	0	0		ENST00000582288.1_1_17:18684606-18692749:+|nuORF;nc|ENSG00000259024|Q96ET8-2|TVP23C;ENSG00000175106|ENST00000518321|TVP23C;ENSG00000171928|ENST00000307767|TVP23B;nc|ENSG00000259024|Q96ET8|TVP23C	ENST00000582288.1_1_17:18684606-18692749:+|nuORF	ENST00000582288.1_1_17:18684606-18692749:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	523.740966796875	2	523.741085	1045.46762	0.34067	0.00017842	0.030768	1.6115E-05	0.37144	0.00019454	523.7409958348017	15.397	0.46881	15.482	15.352	15.821	0.085423					12	8	2	0	0	0	0.0068427	1	5044	5044		121.53	57.574	1	10757000			882	5221	480	483	900	900					-0.05329806563759121
AEEFKVPAA	9	Unmodified	_AEEFKVPAA_					0	0	0		ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1	ENSG00000120686|ENST00000239878|UFM1	ENSG00000120686|ENST00000239878|UFM1	MULTI-MSMS	HCT116MG_D190212_S2	2	481.25347900390625	2	481.2531	960.491647	0.25456	0.00012251	0.472	0.00022715	0.72655	0.00034966	481.25314014426425	36.727	0.41286	36.612	36.395	36.808	-0.11478					15	7	3	0	0	0	0.02327	1	13743	13743		93.166	45.417	1	16399000			883	2705	481	484	901	901					0.009820786605587273
AEEFKVPAA	9	Unmodified	_AEEFKVPAA_					0	0	0		ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1	ENSG00000120686|ENST00000239878|UFM1	ENSG00000120686|ENST00000239878|UFM1	MULTI-MSMS	HCT116MG_D190212_S3	3	481.253173828125	2	481.2531	960.491647	0.17804	8.5683E-05	0.54776	0.00026361	0.7258	0.00034929	481.25318064376137	36.888	0.51998	36.587	36.353	36.873	-0.30113					20	9	3	0	0	0	0.040027	1	13620	13620		79.596	39.647	1	20157000			884	2705	481	484	902	902					0.009820786605587273
AEEFKVPAA	9	Unmodified	_AEEFKVPAA_					0	0	0		ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1	ENSG00000120686|ENST00000239878|UFM1	ENSG00000120686|ENST00000239878|UFM1	MULTI-MSMS	HCT116MG_D190212_S4	4	481.25323486328125	2	481.2531	960.491647	0.20589	9.9084E-05	0.52269	0.00025155	0.72858	0.00035063	481.25309069201006	37.058	0.43835	36.673	36.383	36.822	-0.38486					20	8	3	0	0	0	0.040027	1	13614	13614		79.596	39.647	1	12420000			885	2705	481	484	903	903					0.009820786605587273
AEEFPNLAV	9	Unmodified	_AEEFPNLAV_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	989.4945068359375	1	989.493838	988.486562	0.94559	0.00093565	-0.13727	-0.00013583	0.80831	0.00079982	989.4936768476501	52.554	0.77377	52.367	51.935	52.708	-0.18725					30	14	3	0	0	0	0.027442	1	20121	20121		88.954	48.997	1	27309000			886	5956	482	485	904	904					-0.00814225202043417
AEEFPNLAV	9	Unmodified	_AEEFPNLAV_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	HCT116MG_D190212_S3	3	989.4942626953125	1	989.493838	988.486562	0.81193	0.0008034	0.27948	0.00027654	1.0914	0.0010799	989.4938241090373	52.732	0.73178	52.425	52.038	52.77	-0.30639					29	13	3	0	0	0	0.027442	1	19887	19887		88.954	56.648	1	9383600			887	5956	482	485	905	905					-0.00814225202043417
AEEFPNLAV	9	Unmodified	_AEEFPNLAV_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	HCT116MG_D190212_S3	3	495.24993896484375	2	495.250557	988.486562	0.39092	0.0001936	-0.34966	-0.00017317	0.041263	2.0435E-05	495.25048008384823	52.766	0.31359	52.459	52.3	52.613	-0.3064					8	5	2	0	0	0	0.19461	1	19971	19971		41.84	23.705	1	3298300			888	5956	482	485	906	906					-0.00814225202043417
AEEFPNLAV	9	Unmodified	_AEEFPNLAV_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	HCT116MG_D190212_S4	4	989.4946899414062	1	989.493838	988.486562	0.62044	0.00061392	0.052655	5.2102E-05	0.6731	0.00066603	989.4939441712681	52.75	0.62432	52.409	52.093	52.717	-0.34023					18	11	2	0	0	0	0.041798	1	19672	19672		78.728	46.423	1	4025800			889	5956	482	485	907	907					-0.00814225202043417
AEEFSGRGTVA	11	Unmodified	_AEEFSGRGTVA_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	HCT116MG_D190212_S3	3	562.2731323242188	2	562.272552	1122.53055	0.48888	0.00027488	0.79047	0.00044446	1.2793	0.00071934	562.2727988715978	26.638	0.31214	26.489	26.307	26.619	-0.14924					7	5	2	0	0	0	0.47821	1	9589	9589		48.073	16.804	1	6229100			890	4936	483	486	908	908					-0.025812407757030087
AEEFSGRGTVA	11	Unmodified	_AEEFSGRGTVA_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	HCT116MG_D190212_S4	4	562.2727661132812	2	562.272552	1122.53055	0.2231	0.00012544	0.79443	0.00044669	1.0175	0.00057213	562.2726663219208	26.872	0.25961	26.561	26.379	26.639	-0.3114					6	4	2	0	0	0	0.71855	1	9624	9624		14.957	1.0511	1	2035000			891	4936	483	486	909	909					-0.025812407757030087
AEEFVIVKA	9	Unmodified	_AEEFVIVKA_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	HCT116MG_D190212_S1	1	503.2847900390625	2	503.2844	1004.55425	0.23911	0.00012034	0.20749	0.00010443	0.44661	0.00022477	503.28449119518416	42.769	0.20865	42.769	42.639	42.847	0					9	3	3	0	0	0	0.02327	1	16143	16143		93.166	45.417	1	16657000			892	6073	484	487	910	910					0.05215224728760859
AEEFVIVKA	9	Unmodified	_AEEFVIVKA_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-SECPEP	HCT116MG_D190212_S2	2	503.71661376953125	2	503.2844	1004.55425	0.71489	0.0003598	-0.40699	-0.00020483	0.30791	0.00015496	503.2841878876563	42.785	0.3106	42.715	42.533	42.844	-0.069984					7	5	2	0	0	0	0.099713	1	16180	16180		67.838	33.436	1	29546000			893	6073	484	487	911	911					0.05215224728760859
AEEFVIVKA	9	Unmodified	_AEEFVIVKA_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	HCT116MG_D190212_S3	3	503.71697998046875	2	503.2844	1004.55425	0.45569	0.00022934	0.064483	3.2453E-05	0.52017	0.00026179	503.28458305127003	43.014	0.25075	42.71	42.56	42.81	-0.30472					11	6	2	0	0	0	0.030039	2	16031	16031;16039		86.332	44.492	1	35716000			894	6073	484	487	912;913	912					0.05215224728760859
AEEFVIVKA	9	Unmodified	_AEEFVIVKA_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	HCT116MG_D190212_S4	4	503.2850341796875	2	503.2844	1004.55425	0.29001	0.00014596	0.50274	0.00025302	0.79275	0.00039898	503.28466512140625	43.158	0.22902	42.783	42.636	42.865	-0.37493					45	26	2	0	0	0	0.28073	1	15848	15848		32.786	18.88	1	28016000			895	6073	484	487	914	914					0.05215224728760859
AEEGDFSKGP	10	Unmodified	_AEEGDFSKGP_					0	0	0		REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST;REST|p.S578Vfs*7|3|0.26|ENSG00000084093|chr4:56930584-56930584|A/-|frameshift_variant;nc|ENSG00000084093|Q13127-2|REST;REST|p.P272Qfs*48|1|0.32|ENSG00000084093|chr4:56911448-56911448|T/-|frameshift_variant;nc|ENSG00000084093|Q13127-3|REST	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	518.7512817382812	2	518.732729	1035.4509	0.36657	0.00019015	0.14871	7.714E-05	0.51528	0.00026729	518.7328825055522	25.248	0.36463	24.873	24.712	25.076	-0.37521					8	6	2	0	0	0	0.65652	1	9020	9020		24.021	1.2843	1	6750300			896	1442	485	488	915	915					-0.06540307449699867
AEEGGFAVV	9	Unmodified	_AEEGGFAVV_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;KDM5B|p.A303Pfs*37|1|0.17|ENSG00000117139|chr1:202762711-202762711|T/-|frameshift_variant;KDM5B|p.K293Rfs*51|1|0.03|ENSG00000117139|chr1:202762741-202762742|-/TTCCCTTCCTT|frameshift_variant	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	HCT116MG_D190212_S4	4	878.4266967773438	1	878.425424	877.418148	0.8645	0.0007594	-0.13397	-0.00011768	0.73053	0.00064172	878.4252520878102	45.705	0.51343	45.332	44.988	45.501	-0.37252					15	9	2	0	0	0	0.14972	1	16815	16815		48.346	10.195	1	6492200			897	2558	486	489	916	916					-0.0254646978190749
AEEGKRAEA	9	Unmodified	_AEEGKRAEA_					0	0	0		nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	MULTI-MSMS	HCT116MG_D190212_S4	4	480.74102783203125	2	480.740888	959.467223	0.30202	0.00014519	-0.27542	-0.00013241	0.026592	1.2784E-05	480.74075638132507	20.736	0.25982	20.526	20.344	20.604	-0.20959					7	4	2	0	0	0	0.24534	1	7140	7140		36.506	1.5741	1	5044300			898	9458	487	490	917	917					-0.01413181492955573
AEEGKRAEAE	10	Unmodified	_AEEGKRAEAE_					0	0	0		nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	MULTI-MSMS	HCT116MG_D190212_S3	3	545.2620849609375	2	545.262185	1088.50982	0.42182	0.00023	-0.081255	-4.4305E-05	0.34056	0.0001857	545.2622316967476	22.216	0.36464	22.217	22.042	22.407	0.00074577					13	6	3	0	0	0	0.26742	1	7790	7790		53.404	0	1	9074000			899	9458	488	491	918	918					-0.03089831155398315
AEEGRLREAQ	10	Unmodified	_AEEGRLREAQ_					0	0	0			REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	HCT116MG_D190212_S3	3	579.7968139648438	2	579.796726	1157.5789	0.32814	0.00019026	0.4108	0.00023818	0.73894	0.00042844	579.7968107752245	18.05	0.20778	18.127	18.049	18.257	0.076334					5	3	2	0	0	0	0.57664	1	6133	6133		29.841	2.9569	1	2506900	+		900	14299	489	492	919	919					0.006412528642158577
AEEGTRNVVA	10	Unmodified	_AEEGTRNVVA_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	HCT116MG_D190212_S3	3	523.2674560546875	2	523.26727	1044.51999	0.19604	0.00010258	0.31391	0.00016426	0.50994	0.00026684	523.267464966565	20.758	0.20822	20.792	20.662	20.871	0.034473					6	3	2	0	0	0	0.58241	1	7227	7227		29.437	4.4462	1	3452600			901	2294	490	493	920	920					-0.0004922343014186481
AEEGTSLTA	9	Unmodified	_AEEGTSLTA_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	878.4105224609375	1	878.410168	877.402892	0.77439	0.00068023	0.10737	9.4315E-05	0.88175	0.00077454	878.4100830273408	26.768	0.26211	26.415	26.241	26.503	-0.35254					8	4	3	0	0	0	0.084109	1	9707	9707		61.357	3.8861	1	26753000			902	3473	491	494	921	921					-0.04071381369772098
AEEHKAIH	8	Unmodified	_AEEHKAIH_					0	0	0		ENSG00000283093|ENST00000634648|CENPVL2;ENSG00000224109|ENST00000417339|CENPVL3;ENSG00000223591|ENST00000602548|CENPVL1	ENSG00000283093|ENST00000634648|CENPVL2	ENSG00000283093|ENST00000634648|CENPVL2	MULTI-MSMS	HCT116MG_D190212_S3	3	467.740966796875	2	467.740691	933.466829	0.20227	9.4611E-05	-0.14997	-7.0146E-05	0.052305	2.4465E-05	467.74065718966256	22.588	1.0294	22.569	22.335	23.364	-0.018869					50	19	5	0	0	0	0.69106	1	8173	8173		24.021	2.2739	1	544170000			903	6479	492	495	922	922					-0.0025655642215269836
AEEIGIKAT	9	Unmodified	_AEEIGIKAT_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S3	3	466.25836181640625	2	466.258382	930.502212	0.45282	0.00021113	-0.65341	-0.00030466	-0.20059	-9.3528E-05	466.2581325064745	28.877	0.26046	28.655	28.525	28.786	-0.22195					6	4	2	0	0	0	0.094138	1	10498	10498		59.368	5.5356	1	4492400			904	1727	493	496	923	923					0.034180613149942474
AEEIGIKAT	9	Unmodified	_AEEIGIKAT_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MSMS	HCT116MG_D190212_S4	4	466.2586975097656	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.118	1	28.778	28.278	29.278	-0.34059								0	0	0	0.34992	1	10501	10501		36.506	9.6225	1				905	1727	493	496	924	924					0.034180613149942474
AEEIPEPPP	9	Unmodified	_AEEIPEPPP_					0	0	0			REV__ENSG00000138439|ENST00000392238|FAM117B	REV__ENSG00000138439|ENST00000392238|FAM117B	MSMS	HCT116MG_D190212_S2	2	489.7408142089844	2	489.742565	977.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.415	1	15.088	14.588	15.588	-0.32684								0	0	0	0.76641	1	5120	5120		13.508	4.9146	1		+		906	12225	494	497	925	925					-0.01905931438955122
AEEIPLKILA	10	Unmodified	_AEEIPLKILA_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000435000.2_1_1:146523151-146523364:+|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MSMS	HCT116MG_D190212_S2	2	548.8342895507812	2	548.834257	1095.65396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.679	1	52.492	51.992	52.992	-0.18725								0	0	0	0.078524	1	20241	20241		87.258	45.303	1				907	1288	495	498	926	926					0.10996042342731016
AEEIPLKILA	10	Unmodified	_AEEIPLKILA_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000435000.2_1_1:146523151-146523364:+|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	HCT116MG_D190212_S3	3	549.33642578125	2	548.834257	1095.65396	0.57028	0.00031299	0.001674	9.1873E-07	0.57195	0.00031391	548.8340885583758	52.93	0.36553	52.624	52.404	52.77	-0.3064					11	6	3	0	0	0	0.079802	1	20030	20030		78.06	43.128	1	8284000			908	1288	495	498	927	927					0.10996042342731016
AEEIPLKILA	10	Unmodified	_AEEIPLKILA_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;ENST00000435000.2_1_1:146523151-146523364:+|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	HCT116MG_D190212_S4	4	548.8345947265625	2	548.834257	1095.65396	0.5851	0.00032112	-0.2253	-0.00012365	0.3598	0.00019747	548.8340799717954	53.016	0.20745	52.68	52.513	52.721	-0.33635					5	3	2	0	0	0	0.15757	1	19776	19776		63.227	28.826	1	3332100			909	1288	495	498	928	928					0.10996042342731016
AEEKAHAF	8	Unmodified	_AEEKAHAF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	HCT116MG_D190212_S1	1	451.7225036621094	2	451.721967	901.429381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.132	1	20.132	19.632	20.632	0								0	0	0	0.72655	1	7020	7020		28.487	10.352	1				910	5492	496	499	929	929					-0.025276476877706955
AEEKAHAF	8	Unmodified	_AEEKAHAF_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	451.7218322753906	2	451.721967	901.429381	0.14162	6.3975E-05	0.11328	5.1171E-05	0.2549	0.00011515	451.72203137715695	20.852	0.20795	20.469	20.338	20.546	-0.38288					8	3	3	0	0	0	0.11121	1	7327	7327		92.491	37.718	1	16069000			911	5492	496	499	930	930					-0.025276476877706955
AEEKAILNAV	10	Unmodified	_AEEKAILNAV_					0	0	0		TRPC5|p.F36I|1|0.04|ENSG00000072315|chrX:111952315-111952315|A/T|missense_variant	TRPC5|p.F36I|1|0.04|ENSG00000072315|chrX:111952315-111952315|A/T|missense_variant	TRPC5|p.F36I|1|0.04|ENSG00000072315|chrX:111952315-111952315|A/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	529.2976684570312	2	529.298039	1056.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.636	1	34.25	33.75	34.75	-0.38558								0	0	0	0.89062	1	12655	12655		17.113	1.8644	1				912	18666	497	500	931	931					0.0554970826913177
AEEKAKEIA	9	Unmodified	_AEEKAKEIA_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7692565917969	2	494.769114	987.523675	0.33849	0.00016747	0.0071432	3.5342E-06	0.34563	0.00017101	494.7690739099409	17.458	0.26144	17.108	16.925	17.187	-0.34933					7	4	2	0	0	0	0.06555	1	5953	5953		67.081	13.677	1	8554300			913	5527	498	501	932	932					0.02941446343709231
AEEKDWKTA	9	Unmodified	_AEEKDWKTA_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S1	1	539.2648315429688	2	539.264196	1076.51384	0.547	0.00029498	0.073017	3.9376E-05	0.62002	0.00033435	539.2641754702568	20.253	0.20874	20.253	20.123	20.331	0					9	3	3	0	0	0	0.01206	1	7081	7081		108.26	64.49	1	18025000			914	2176	499	502	933	933					-0.021357416616638147
AEEKDWKTA	9	Unmodified	_AEEKDWKTA_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S2	2	539.264404296875	2	539.264196	1076.51384	0.48821	0.00026328	0.11186	6.032E-05	0.60007	0.0003236	539.2642357900953	20.852	0.57312	20.469	20.286	20.859	-0.38288					25	10	5	0	0	0	0.0080275	1	7310	7310		118.21	66.58	1	170600000			915	2176	499	502	934	934					-0.021357416616638147
AEEKDWKTA	9	Unmodified	_AEEKDWKTA_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S2	2	359.8450622558594	3	359.845223	1076.51384	-0.16245	-5.8456E-05	0.081821	2.9443E-05	-0.080628	-2.9014E-05	359.8452067061486	20.852	0.31283	20.469	20.286	20.598	-0.38288					12	5	3	0	0	0	0.094138	1	7312	7312		48.073	22.052	1	43651000			916	2176	499	502	935	935					-0.021357416616638147
AEEKDWKTA	9	Unmodified	_AEEKDWKTA_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S3	3	539.264404296875	2	539.264196	1076.51384	0.40521	0.00021852	0.088056	4.7485E-05	0.49327	0.000266	539.2642126283577	19.983	0.52081	20.032	19.843	20.363	0.048107					21	9	3	0	0	0	0.0060363	1	6884	6884		128.58	68.505	1	59684000			917	2176	499	502	936	936					-0.021357416616638147
AEEKDWKTA	9	Unmodified	_AEEKDWKTA_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S3	3	359.8451232910156	3	359.845223	1076.51384	-0.15023	-5.4059E-05	-0.016678	-6.0016E-06	-0.16691	-6.0061E-05	359.845172256627	19.977	0.52081	20.025	19.843	20.363	0.048107					21	9	4	0	0	0	0.064006	1	6889	6889		55.249	23.211	1	25546000			918	2176	499	502	937	937					-0.021357416616638147
AEEKDWKTA	9	Unmodified	_AEEKDWKTA_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S4	4	539.263916015625	2	539.264196	1076.51384	0.45063	0.00024301	-0.11909	-6.4222E-05	0.33154	0.00017879	539.2641250816043	20.419	0.41596	20.218	20.04	20.456	-0.20133					19	7	4	0	0	0	0.0080275	1	6971	6971		118.21	66.58	1	28536000			919	2176	499	502	938	938					-0.021357416616638147
AEEKDWKTA	9	Unmodified	_AEEKDWKTA_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S4	4	359.84515380859375	3	359.845223	1076.51384	-0.0078185	-2.8134E-06	-0.22388	-8.0561E-05	-0.2317	-8.3374E-05	359.8451878970686	20.418	0.31199	20.217	20.04	20.352	-0.20133					12	5	4	0	0	0	0.34272	1	6997	6997		24.882	10.476	1	8672500			920	2176	499	502	939	939					-0.021357416616638147
AEEKLTHKMEA	11	Unmodified	_AEEKLTHKMEA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S1	1	643.82421875	2	643.824095	1285.63364	0.58091	0.000374	0.1777	0.00011441	0.75861	0.00048841	643.8240187873245	19.521	0.15639	19.521	19.443	19.6	0					4	2	2	0	0	0	0.49596	1	6802	6802		59.935	27.898	1	6787800			921	2583	500	503	940	940					0.002245036205977158
AEEKLTHKMEA	11	Unmodified	_AEEKLTHKMEA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S2	2	429.5516052246094	3	429.551822	1285.63364	-0.040026	-1.7193E-05	-0.29243	-0.00012562	-0.33246	-0.00014281	429.5517194552649	20.271	0.31577	19.891	19.761	20.076	-0.37949					14	5	4	0	0	0	0.20862	1	7082	7082		74.48	48.359	1	61713000			922	2583	500	503	941	941					0.002245036205977158
AEEKLTHKMEA	11	Unmodified	_AEEKLTHKMEA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MSMS	HCT116MG_D190212_S2	2	643.8243408203125	2	643.824095	1285.63364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.283	1	19.904	19.404	20.404	-0.37949								0	0	0	1.1091E-10	1	7081	7081		186.46	124.85	1				923	2583	500	503	942	942					0.002245036205977158
AEEKLTHKMEA	11	Unmodified	_AEEKLTHKMEA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S3	3	429.5517883300781	3	429.551822	1285.63364	0.099873	4.2901E-05	-0.031388	-1.3483E-05	0.068486	2.9418E-05	429.55178599215014	19.144	0.41605	19.213	19.083	19.499	0.069159					24	7	5	0	0	0	0.20862	1	6551	6551		74.48	43.018	1	54819000			924	2583	500	503	943	943					0.002245036205977158
AEEKLTHKMEA	11	Unmodified	_AEEKLTHKMEA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S3	3	643.824951171875	2	643.824095	1285.63364	0.5335	0.00034348	0.046324	2.9825E-05	0.57982	0.0003733	643.8242373896243	19.144	0.31191	19.213	19.083	19.395	0.069159					15	5	4	0	0	0	0.037758	1	6555	6555		124.34	92.303	1	35001000			925	2583	500	503	944	944					0.002245036205977158
AEEKLTHKMEA	11	Unmodified	_AEEKLTHKMEA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S4	4	643.8241577148438	2	643.824095	1285.63364	0.47643	0.00030674	-0.0956	-6.1549E-05	0.38083	0.00024519	643.82408116159	19.602	0.30215	19.408	19.278	19.58	-0.19367					11	5	3	0	0	0	0.12222	1	6662	6662		106.29	67.674	1	21700000			926	2583	500	503	945	945					0.002245036205977158
AEEKLTHKMEA	11	Unmodified	_AEEKLTHKMEA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S4	4	429.5518493652344	3	429.551822	1285.63364	0.18951	8.1403E-05	-0.18798	-8.0748E-05	0.0015246	6.5488E-07	429.55177178651047	19.602	0.30215	19.408	19.278	19.58	-0.19367					12	5	3	0	0	0	0.13275	1	6663	6663		83.428	60.089	1	18696000			927	2583	500	503	946	946					0.002245036205977158
AEEKLTHKMEA	11	Unmodified	_AEEKLTHKMEA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MATCH	HCT116MG_D190212_S1	1		3	429.551822	1285.63364	-0.10519	-4.5184E-05	-0.20257	-8.7014E-05	-0.30776	-0.0001322	429.551784098766	19.547	0.15639	19.547	19.443	19.6	0	-0.17218	8.6091E-05	NaN	74.48	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4766600			928	2583	500	503							0.002245036205977158
AEEKLTHKMEA	11	Oxidation (M)	_AEEKLTHKM(Oxidation (M))EA_		AEEKLTHKM(1)EA		AEEKLTHKM(92)EA	0	0	1		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S2	2	652.3245239257812	2	651.821552	1301.62855	0.47558	0.00030999	0.074256	4.8402E-05	0.54984	0.0003584	651.8215395520403	15.22	0.31283	14.893	14.654	14.967	-0.32684					10	5	3	0	0	0	0.086814	1	5052	5052		91.694	72.973	1	3007800			929	2583	500	504	947	947		51			-0.010198002420338526
AEEKNNWMA	9	Unmodified	_AEEKNNWMA_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MSMS	HCT116MG_D190212_S2	2	546.7536010742188	2	546.742573	1091.47059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.126	1	32.915	32.415	33.415	-0.21135								0	0	0	0.74083	1	12281	12281		17.113	4.0704	1				930	1713	501	505	948	948					-0.07148254710591573
AEEKNNWMA	9	Unmodified	_AEEKNNWMA_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	HCT116MG_D190212_S3	3	546.7428588867188	2	546.742573	1091.47059	0.50399	0.00027555	-0.048713	-2.6633E-05	0.45528	0.00024892	546.7426218078645	33.464	0.29221	33.174	33.011	33.304	-0.29013					11	5	3	0	0	0	0.05892	1	12268	12268		70.332	34.288	1	12818000			931	1713	501	505	949	949					-0.07148254710591573
AEEKNNWMA	9	Unmodified	_AEEKNNWMA_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2;SOS1|p.I742Lfs*24|1|0.08|ENSG00000115904|chr2:39012292-39012292|T/-|frameshift_variant;SOS1|p.K1030Nfs*6|1|0.34|ENSG00000115904|chr2:38995379-38995379|T/-|frameshift_variant;ENSG00000115904|ENST00000402219|SOS1	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	HCT116MG_D190212_S4	4	546.7434692382812	2	546.742573	1091.47059	0.8093	0.00044248	0.13434	7.3448E-05	0.94363	0.00051593	546.7425736699814	33.533	0.2924	33.149	33.018	33.311	-0.38426					9	6	2	0	0	0	0.15273	1	12216	12216		47.749	26.002	1	4543700			932	1713	501	505	950	950					-0.07148254710591573
AEELDNQY	8	Unmodified	_AEELDNQY_					0	0	0		AFMID|p.E24D|1|0.18|ENSG00000183077|chr17:78190978-78190978|G/T|missense_variant	AFMID|p.E24D|1|0.18|ENSG00000183077|chr17:78190978-78190978|G/T|missense_variant	AFMID|p.E24D|1|0.18|ENSG00000183077|chr17:78190978-78190978|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	491.21197509765625	2	491.211629	980.408705	0.22352	0.0001098	1.1061	0.00054334	1.3296	0.00065313	491.2119445755482	43.865	0.31303	43.559	43.396	43.709	-0.30616					8	5	2	0	0	0	0.74206	1	16429	16429		18.135	2.2878	1	3085800			933	72	502	506	951	951					-0.08228282858090097
AEELGNNVKP	10	Unmodified	_AEELGNNVKP_					0	0	0		nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;nc|ENSG00000131373|Q9UJ83-2|HACL1;ENSG00000131373|ENST00000321169|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-MSMS	HCT116MG_D190212_S2	2	535.7780151367188	2	535.77747	1069.54039	0.45648	0.00024457	-0.19089	-0.00010228	0.26558	0.00014229	535.7773923562735	26.962	0.47385	26.609	26.345	26.818	-0.35254					13	8	2	0	0	0	0.032631	1	9790	9790		100.09	58.251	1	15232000			934	3134	503	507	952	952					0.00839947229678728
AEELGNNVKP	10	Unmodified	_AEELGNNVKP_					0	0	0		nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;nc|ENSG00000131373|Q9UJ83-2|HACL1;ENSG00000131373|ENST00000321169|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-MSMS	HCT116MG_D190212_S3	3	535.7776489257812	2	535.77747	1069.54039	0.53592	0.00028713	0.04753	2.5466E-05	0.58345	0.0003126	535.7773310448389	26.812	0.57267	26.663	26.307	26.88	-0.14924					23	10	3	0	0	0	0.025294	1	9630	9630		110.79	70.554	1	21138000			935	3134	503	507	953	953					0.00839947229678728
AEELGNNVKP	10	Unmodified	_AEELGNNVKP_					0	0	0		nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;nc|ENSG00000131373|Q9UJ83-2|HACL1;ENSG00000131373|ENST00000321169|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-MSMS	HCT116MG_D190212_S4	4	535.7775268554688	2	535.77747	1069.54039	0.46325	0.0002482	0.11349	6.0803E-05	0.57673	0.000309	535.7773520977805	27.003	0.46765	26.692	26.431	26.899	-0.3114					18	8	3	0	0	0	0.086065	1	9638	9638		76.825	40.698	1	8659300			936	3134	503	507	954	954					0.00839947229678728
AEELPHIHA	9	Unmodified	_AEELPHIHA_					0	0	0		ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	MSMS	HCT116MG_D190212_S3	3	508.7615661621094	2	508.761623	1015.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.623	1	32.338	31.838	32.838	-0.28511								0	0	0	0.034849	1	11963	11963		77.984	34.126	1				937	5083	504	508	955	955					0.0015599926638287798
AEENALQQKA	10	Unmodified	_AEENALQQKA_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S1	1	551.7396850585938	2	551.280377	1100.5462	0.50742	0.00027973	-0.82035	-0.00045225	-0.31294	-0.00017252	551.2798806149221	22.141	0.26112	22.141	21.959	22.22	0					6	4	2	0	0	0	0.072018	1	7841	7841		79.596	33.856	1	1435800			938	1620	505	509	956	956					-4.9542586793904775E-05
AEENALQQKA	10	Unmodified	_AEENALQQKA_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S3	3	551.2807006835938	2	551.280377	1100.5462	0.4024	0.00022183	0.13704	7.5548E-05	0.53944	0.00029738	551.2805256615983	22.119	0.67737	22.12	21.834	22.511	0.00074577					17	12	2	0	0	0	0.010123	1	7744	7744		148.27	64.839	1	28247000			939	1620	505	509	957	957					-4.9542586793904775E-05
AEENALQQKA	10	Unmodified	_AEENALQQKA_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S4	4	551.2807006835938	2	551.280377	1100.5462	0.49454	0.00027263	0.20417	0.00011255	0.69871	0.00038518	551.2805418523652	22.382	0.67518	22.154	21.832	22.507	-0.22777					21	12	4	0	0	0	0.011036	1	7789	7789		143.21	46.278	1	11772000			940	1620	505	509	958	958					-4.9542586793904775E-05
AEENFRSISA	10	Unmodified	_AEENFRSISA_					0	0	0		nc|ENSG00000085831|Q5SRH9-2|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	MULTI-MSMS	HCT116MG_D190212_S2	2	562.272705078125	2	562.272552	1122.53055	0.2835	0.0001594	-0.54815	-0.00030821	-0.26465	-0.00014881	562.2724827580059	32.51	0.26048	32.28	32.098	32.359	-0.23009					7	4	2	0	0	0	0.065434	1	12037	12037		80.896	33.301	1	27984000			941	1461	506	510	959	959					-0.025812407757030087
AEENFRSISA	10	Unmodified	_AEENFRSISA_					0	0	0		nc|ENSG00000085831|Q5SRH9-2|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	MULTI-MSMS	HCT116MG_D190212_S3	3	562.2725830078125	2	562.272552	1122.53055	0.50993	0.00028672	-0.7139	-0.0004014	-0.20396	-0.00011468	562.2722598033948	32.611	0.5211	32.326	32.039	32.56	-0.28511					14	9	2	0	0	0	0.019252	1	11961	11961		121.93	70.514	1	21821000			942	1461	506	510	960	960					-0.025812407757030087
AEENFRSISA	10	Unmodified	_AEENFRSISA_					0	0	0		nc|ENSG00000085831|Q5SRH9-2|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	MULTI-MSMS	HCT116MG_D190212_S4	4	562.2727661132812	2	562.272552	1122.53055	0.25965	0.00014599	0.22703	0.00012765	0.48668	0.00027364	562.272686495458	32.676	0.25964	32.296	32.157	32.416	-0.37923					10	4	3	0	0	0	0.024602	1	11917	11917		112.04	60.626	1	10153000			943	1461	506	510	961	961					-0.025812407757030087
AEENPKESKP	10	Unmodified	_AEENPKESKP_					0	0	0		ENSG00000167779|ENST00000301464|IGFBP6;ENST00000549628.1_1_12:53492723-53495948:+|nuORF	ENSG00000167779|ENST00000301464|IGFBP6	ENSG00000167779|ENST00000301464|IGFBP6	MULTI-MSMS	HCT116MG_D190212_S2	2	564.780029296875	2	564.78021	1127.54587	0.31887	0.00018009	-0.08093	-4.5708E-05	0.23794	0.00013439	564.7801548174907	14.486	0.29418	14.166	14.002	14.296	-0.31952					9	5	2	0	0	0	0.054788	1	4759	4759		93.448	47.426	1	4391700			944	4958	507	511	962	962					-0.01280373978534044
AEENQEPA	8	Unmodified	_AEENQEPA_					0	0	0			REV__DOK6|p.S308N|1|0.62|ENSG00000206052|chr18:69841310-69841310|G/A|missense_variant	REV__DOK6|p.S308N|1|0.62|ENSG00000206052|chr18:69841310-69841310|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	444.19073486328125	2	444.190697	886.36684	-0.038872	-1.7267E-05	0.11584	5.1457E-05	0.076973	3.4191E-05	444.19071002522475	17.421	0.57121	17.251	17.069	17.64	-0.17047					15	10	2	0	0	0	0.66231	1	5805	5805		26.884	3.7352	1	1695400	+		945	10406	508	512	963	963					-0.08088838546620991
AEEPASVTP	9	Unmodified	_AEEPASVTP_					0	0	0		ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	900.4315795898438	1	900.430903	899.423627	0.95179	0.00085702	-0.010252	-9.2312E-06	0.94154	0.00084779	900.4309449642407	27.311	0.781	27.141	26.703	27.484	-0.16933					29	14	3	0	0	0	0.012168	1	9812	9812		108	39.916	1	6317200			946	4214	509	513	964	964					-0.030107909900834784
AEEPASVTP	9	Unmodified	_AEEPASVTP_					0	0	0		ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	900.4302978515625	1	900.430903	899.423627	0.74929	0.00067468	0.35601	0.00032056	1.1053	0.00099524	900.4313254806209	27.562	0.61355	27.241	26.836	27.45	-0.32157					20	11	2	0	0	0	0.012168	1	9800	9800		108	22.64	1	2503400			947	4214	509	513	965	965					-0.030107909900834784
AEEPDLHGP	9	Unmodified	_AEEPDLHGP_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4;RECQL4|p.Q880Sfs*4|1|0.25|ENSG00000160957|chr8:144512965-144512966|-/G|frameshift_variant	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	MULTI-SECPEP	HCT116MG_D190212_S1	1	482.709716796875	2	482.722164	963.429775	0.31715	0.0001531	-0.57983	-0.0002799	-0.26268	-0.0001268	482.72224397403886	28.107	0.57279	28.107	27.748	28.321	0					11	10	2	0	0	0	0.21227	1	10111	10111		21.747	5.8995	1	2058400			948	4472	510	514	966	966					-0.05340272758564879
AEEPDLHGP	9	Unmodified	_AEEPDLHGP_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4;RECQL4|p.Q880Sfs*4|1|0.25|ENSG00000160957|chr8:144512965-144512966|-/G|frameshift_variant	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7223205566406	2	482.722164	963.429775	0.1813	8.7519E-05	0.13537	6.5344E-05	0.31667	0.00015286	482.72222685987873	28.234	0.77493	27.904	27.563	28.338	-0.32987					22	14	2	0	0	0	0.026974	2	10302	10302;10369		89.427	4.0701	1	13121000			949	4472	510	514	967;968	967					-0.05340272758564879
AEEPDLHGP	9	Unmodified	_AEEPDLHGP_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4;RECQL4|p.Q880Sfs*4|1|0.25|ENSG00000160957|chr8:144512965-144512966|-/G|frameshift_variant	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	MULTI-MSMS	HCT116MG_D190212_S3	3	482.7218933105469	2	482.722164	963.429775	0.24138	0.00011652	0.25498	0.00012309	0.49636	0.0002396	482.7220919364984	28.542	1.1984	28.336	27.603	28.802	-0.20593					47	22	3	0	0	0	0.026974	3	10393	10146;10160;10393		89.427	4.0701	1	11227000			950	4472	510	514	969;970;971	971					-0.05340272758564879
AEEPDLHGP	9	Unmodified	_AEEPDLHGP_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4;RECQL4|p.Q880Sfs*4|1|0.25|ENSG00000160957|chr8:144512965-144512966|-/G|frameshift_variant	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	MULTI-MSMS	HCT116MG_D190212_S4	4	482.7218933105469	2	482.722164	963.429775	0.13143	6.3446E-05	0.028687	1.3848E-05	0.16012	7.7294E-05	482.72212690690424	28.614	1.0393	28.282	27.752	28.791	-0.33138					32	19	2	0	0	0	0.058138	2	10414	10175;10414		70.716	13.244	1	5793200			951	4472	510	514	972;973	973					-0.05340272758564879
AEEPNAAVP	9	Unmodified	_AEEPNAAVP_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	449.21978759765625	2	449.219257	896.423961	0.20166	9.0589E-05	0.1747	7.8477E-05	0.37636	0.00016907	449.21926935093825	29.297	1.0998	29.075	28.577	29.677	-0.22196					37	20	3	0	0	0	0.049545	2	10558	10558;10797		74.929	17.458	1	7872600			952	1617	511	515	974;975	974					-0.02839371270238189
AEEPNAAVP	9	Unmodified	_AEEPNAAVP_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	897.43212890625	1	897.431238	896.423961	1.0915	0.00097959	-0.07147	-6.414E-05	1.0201	0.00091545	897.4310170700483	29.248	1.3109	29.026	28.525	29.836	-0.22196					48	24	3	0	0	0	0.084109	1	10577	10577		61.357	0.96792	1	14171000			953	1617	511	515	976	976					-0.02839371270238189
AEEPNAAVP	9	Unmodified	_AEEPNAAVP_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S4	4	897.4324951171875	1	897.431238	896.423961	0.66836	0.0005998	-0.10339	-9.2784E-05	0.56497	0.00050702	897.4310204539207	29.39	1.1952	29.041	28.514	29.709	-0.34921					37	22	2	0	0	0	0.031089	2	10557	10557;10792		85.272	17.928	1	7645800			954	1617	511	515	977;978	977					-0.02839371270238189
AEEPNAAVP	9	Unmodified	_AEEPNAAVP_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S4	4	449.2188415527344	2	449.219257	896.423961	0.28343	0.00012732	0.014871	6.6805E-06	0.2983	0.000134	449.219280647122	29.217	1.0393	28.873	28.623	29.663	-0.34331					25	19	2	0	0	0	0.16144	1	10588	10588		46.021	1.6139	1	3295900			955	1617	511	515	979	979					-0.02839371270238189
AEEPPAHAP	9	Unmodified	_AEEPPAHAP_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	459.7193298339844	2	459.719424	917.424296	0.19168	8.8119E-05	0.21406	9.841E-05	0.40574	0.00018653	459.71942091252646	20.253	0.52166	20.253	20.07	20.592	0					13	9	2	0	0	0	0.20784	1	7106	7106		40.449	17.3	1	3403600			956	8520	512	516	980	980					-0.03771951550390895
AEEPPAHAP	9	Unmodified	_AEEPPAHAP_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	459.7194519042969	2	459.719424	917.424296	0.15968	7.3407E-05	0.22863	0.0001051	0.38831	0.00017851	459.71947468443653	20.754	1.3601	20.374	19.761	21.121	-0.37949					48	25	3	0	0	0	0.22969	2	7239	7239;7466		38.151	3.7495	1	31257000			957	8520	512	516	981;982	981					-0.03771951550390895
AEEPPAHAP	9	Unmodified	_AEEPPAHAP_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	459.719482421875	2	459.719424	917.424296	0.31894	0.00014662	-0.0084589	-3.8887E-06	0.31049	0.00014274	459.7193188516284	20.128	1.5098	20.177	19.791	21.3	0.048109					60	28	4	0	0	0	0.10839	1	7115	7115		56.541	26.316	1	25783000			958	8520	512	516	983	983					-0.03771951550390895
AEEPPAHAP	9	Unmodified	_AEEPPAHAP_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	459.7195739746094	2	459.719424	917.424296	0.13896	6.3883E-05	0.30097	0.00013836	0.43993	0.00020225	459.71944213786094	20.485	1.5538	20.284	19.525	21.079	-0.20133					58	29	3	0	0	0	0.1569	1	7138	7138		46.921	16.696	1	18124000			959	8520	512	516	984	984					-0.03771951550390895
AEEPWGEEA	9	Unmodified	_AEEPWGEEA_					0	0	0		MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant;nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant	MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	509.2119140625	2	509.211629	1016.40871	0.11439	5.8249E-05	0.47381	0.00024127	0.5882	0.00029952	509.2119137689144	38.472	0.36351	38.17	37.989	38.352	-0.30137					9	6	2	0	0	0	0.055677	1	14283	14283		71.922	10.565	1	5282400			960	3256	513	517	985	985					-0.09884282858092774
AEEQAQARAQA	11	Unmodified	_AEEQAQARAQA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	HCT116MG_D190212_S3	3	586.7864990234375	2	586.786358	1171.55816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.111	1	15.195	14.695	15.695	0.083271								0	0	0	0.93295	1	4919	4919		15.248	3.0078	1				961	5492	514	518	986	986					-0.020753375154754394
AEEQKKFAL	9	Unmodified	_AEEQKKFAL_					0	0	0			REV__nc|ENSG00000292373|Q01113-3|IL9R	REV__nc|ENSG00000292373|Q01113-3|IL9R	MULTI-MSMS	HCT116MG_D190212_S3	3	532.2928466796875	2	532.292756	1062.57096	0.55344	0.00029459	-0.27141	-0.00014447	0.28202	0.00015012	532.2926304324545	28.461	0.26062	28.255	28.125	28.385	-0.20593					10	4	3	0	0	0	0.10482	1	10307	10307		71.922	19.654	1	14429000	+		962	11784	515	519	987	987					0.04217725614716983
AEEQNSQTP	9	Unmodified	_AEEQNSQTP_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-2|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MSMS	HCT116MG_D190212_S3	3	502.2204284667969	2	502.219985	1002.42542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.932	1	16.018	15.518	16.518	0.085423								0	0	0	0.32965	1	5250	5250		37.974	22.127	1				963	2256	516	520	988	988					-0.07569781972131295
AEEQRVHSPP	10	Unmodified	_AEEQRVHSPP_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S1	1	575.2883911132812	2	575.285994	1148.55744	0.57246	0.00032933	3.1942	0.0018376	3.7667	0.0021669	575.2883912007346	32.899	0.24255	32.899	32.794	33.037	0					8	4	3	0	0	0	0.72678	1	12192	12192		18.146	1.0335	1	7231800			964	6174	517	521	989	989					-0.010901321645178541
AEEQVGQEA	9	Unmodified	_AEEQVGQEA_					0	0	0		ENST00000524349.5_1_8:56986938-56987037:-|nuORF;ENST00000520627.1_1_8:56986320-56987037:-|nuORF;ENST00000009589.7_1_8:56986648-56987037:-|nuORF	ENST00000524349.5_1_8:56986938-56987037:-|nuORF	ENST00000524349.5_1_8:56986938-56987037:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	480.7170104980469	2	480.717079	959.419604	0.16913	8.1302E-05	0.055536	2.6697E-05	0.22466	0.000108	480.7170280171812	19.855	0.20715	19.48	19.351	19.558	-0.37503					8	3	3	0	0	0	0.060947	1	6933	6933		69.338	6.7655	1	8775200			965	6709	518	522	990	990					-0.06172880483802601
AEEQVGQEA	9	Unmodified	_AEEQVGQEA_					0	0	0		ENST00000524349.5_1_8:56986938-56987037:-|nuORF;ENST00000520627.1_1_8:56986320-56987037:-|nuORF;ENST00000009589.7_1_8:56986648-56987037:-|nuORF	ENST00000524349.5_1_8:56986938-56987037:-|nuORF	ENST00000524349.5_1_8:56986938-56987037:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	480.7180480957031	2	480.717079	959.419604	0.19293	9.2743E-05	0.24789	0.00011916	0.44081	0.00021191	480.71714025749554	19.456	0.3126	19.516	19.386	19.698	0.05983					13	5	3	0	0	0	0.0035136	1	6678	6678		168.54	72.171	1	12268000			966	6709	518	522	991	991					-0.06172880483802601
AEEQVGQEA	9	Unmodified	_AEEQVGQEA_					0	0	0		ENST00000524349.5_1_8:56986938-56987037:-|nuORF;ENST00000520627.1_1_8:56986320-56987037:-|nuORF;ENST00000009589.7_1_8:56986648-56987037:-|nuORF	ENST00000524349.5_1_8:56986938-56987037:-|nuORF	ENST00000524349.5_1_8:56986938-56987037:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	960.4279174804688	1	960.426881	959.419604	0.66036	0.00063423	0.45072	0.00043288	1.1111	0.0010671	960.4274454101164	19.456	0.26054	19.516	19.386	19.646	0.05983					6	4	2	0	0	0	0.030723	1	6704	6704		85.642	26.963	1	3278600			967	6709	518	522	992	992					-0.06172880483802601
AEEQVGQEA	9	Unmodified	_AEEQVGQEA_					0	0	0		ENST00000524349.5_1_8:56986938-56987037:-|nuORF;ENST00000520627.1_1_8:56986320-56987037:-|nuORF;ENST00000009589.7_1_8:56986648-56987037:-|nuORF	ENST00000524349.5_1_8:56986938-56987037:-|nuORF	ENST00000524349.5_1_8:56986938-56987037:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	480.71783447265625	2	480.717079	959.419604	0.27518	0.00013228	0.020383	9.7983E-06	0.29556	0.00014208	480.71717461815547	19.654	0.25023	19.46	19.33	19.58	-0.19367					7	4	2	0	0	0	0.0158	1	6686	6686		100.71	18.818	1	2404100			968	6709	518	522	993	993					-0.06172880483802601
AEERDKRLA	9	Unmodified	_AEERDKRLA_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S2	2	363.1998291015625	3	363.2	1086.57817	-0.32428	-0.00011778	0.03756	1.3642E-05	-0.28672	-0.00010414	363.19997813980535	11.649	0.36062	11.367	11.156	11.517	-0.28186					21	14	2	0	0	0	0.64246	1	3748	3748		12.873	8.9963	1	689220			969	6199	519	523	994	994					0.038344582151466966
AEERDKRLA	9	Unmodified	_AEERDKRLA_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S2	2	544.2954711914062	2	544.296362	1086.57817	0.36339	0.00019779	0.058013	3.1576E-05	0.42141	0.00022937	544.2962822565972	11.633	0.19919	11.351	11.244	11.443	-0.28186					10	7	2	0	0	0	0.72852	1	3752	3752		3.2813	0	1	355440			970	6199	519	523	995	995					0.038344582151466966
AEERDKRLAA	10	Unmodified	_AEERDKRLAA_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S1	1	579.8161010742188	2	579.814919	1157.61528	0.45853	0.00026586	0.071345	4.1367E-05	0.52987	0.00030723	579.8148518112118	16.343	0.2081	16.343	16.213	16.421	0					8	3	3	0	0	0	0.086065	1	5507	5507		76.825	34.869	1	20417000			971	6199	520	524	996	996					0.04278129760905358
AEERDKRLAA	10	Unmodified	_AEERDKRLAA_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S1	1	386.87896728515625	3	386.879038	1157.61528	-0.16771	-6.4884E-05	0.11924	4.6132E-05	-0.04847	-1.8752E-05	386.87905598681033	16.343	0.31217	16.343	16.213	16.525	0					11	5	3	0	0	0	0.079802	1	5515	5515		68.484	39.203	1	29478000			972	6199	520	524	997	997					0.04278129760905358
AEERDKRLAA	10	Unmodified	_AEERDKRLAA_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S2	2	579.8151245117188	2	579.814919	1157.61528	0.46923	0.00027207	-0.089078	-5.1649E-05	0.38015	0.00022042	579.8148763649393	16.884	0.52045	16.543	16.36	16.881	-0.34183					27	9	5	0	0	0	0.011036	1	5712	5712		143.21	79.253	1	384510000			973	6199	520	524	998	998					0.04278129760905358
AEERDKRLAA	10	Unmodified	_AEERDKRLAA_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S2	2	386.87896728515625	3	386.879038	1157.61528	0.032047	1.2398E-05	-0.099496	-3.8493E-05	-0.067449	-2.6095E-05	386.8790237980344	16.885	0.52045	16.543	16.36	16.881	-0.34183					31	9	6	0	0	0	0.031798	1	5713	5713		80.24	39.525	1	204140000			974	6199	520	524	999	999					0.04278129760905358
AEERDKRLAA	10	Unmodified	_AEERDKRLAA_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S2	2	1158.6231689453125	1	1158.62256	1157.61528	0.49866	0.00057776	-0.35373	-0.00040984	0.14494	0.00016793	1158.6221354175236	16.884	0.20788	16.543	16.412	16.62	-0.34183					6	3	2	0	0	0	0.048437	1	5742	5742		88.364	40.615	1	8159300			975	6199	520	524	1000	1000					0.04278129760905358
AEERDQLLP	9	Unmodified	_AEERDQLLP_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	HCT116MG_D190212_S4	4	536.2794799804688	2	535.77747	1069.54039	0.48049	0.00025744	0.51938	0.00027827	0.99987	0.00053571	535.7775866762703	39.441	0.21406	39.061	38.928	39.142	-0.38055					6	4	2	0	0	0	0.51301	1	14502	14502		16.149	1.7437	1	3627000			976	4832	521	525	1001	1001					0.008399472296559907
AEERIEGRVA	10	Unmodified	_AEERIEGRVA_					0	0	0		ENST00000380393.7_1_20:2844875-2903853:+|nuORF;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	565.3018188476562	2	565.301644	1128.58874	0.42268	0.00023894	-0.36745	-0.00020772	0.055236	3.1225E-05	565.3014016949282	21.252	0.21281	21.252	21.12	21.333	0					5	3	2	0	0	0	0.57664	1	7481	7481		29.841	10.584	1	5194800			977	6449	522	526	1002	1002					0.02958440869565493
AEERIEGRVA	10	Unmodified	_AEERIEGRVA_					0	0	0		ENST00000380393.7_1_20:2844875-2903853:+|nuORF;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	565.3017578125	2	565.301644	1128.58874	0.32001	0.0001809	0.055191	3.12E-05	0.3752	0.0002121	565.301571647072	21.837	0.26034	21.452	21.271	21.531	-0.38503					12	4	4	0	0	0	0.060266	1	7707	7707		81.915	36.216	1	59651000			978	6449	522	526	1003	1003					0.02958440869565493
AEERIEGRVA	10	Unmodified	_AEERIEGRVA_					0	0	0		ENST00000380393.7_1_20:2844875-2903853:+|nuORF;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	565.301513671875	2	565.301644	1128.58874	0.27251	0.00015405	-0.16138	-9.1227E-05	0.11113	6.2824E-05	565.3015244148747	21.07	0.31222	21.105	20.975	21.287	0.034473					9	5	2	0	0	0	0.024602	1	7325	7325		112.04	44.203	1	25053000			979	6449	522	526	1004	1004					0.02958440869565493
AEERIEGRVA	10	Unmodified	_AEERIEGRVA_					0	0	0		ENST00000380393.7_1_20:2844875-2903853:+|nuORF;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	565.30126953125	2	565.301644	1128.58874	0.39308	0.00022221	-0.11306	-6.3913E-05	0.28002	0.0001583	565.3014183792187	21.416	0.31164	21.197	21.062	21.374	-0.21832					12	5	3	0	0	0	0.030673	1	7395	7395		101.54	57.771	1	12091000			980	6449	522	526	1005	1005					0.02958440869565493
AEERIEGRVA	10	Unmodified	_AEERIEGRVA_					0	0	0		ENST00000380393.7_1_20:2844875-2903853:+|nuORF;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	377.203369140625	3	377.203522	1128.58874	0.053102	2.003E-05	-0.13878	-5.2348E-05	-0.085678	-3.2318E-05	377.2033959004509	21.411	0.25995	21.192	21.062	21.322	-0.21832					6	4	2	0	0	0	0.37453	1	7415	7415		32.616	2.2621	1	7258300			981	6449	522	526	1006	1006					0.02958440869565493
AEERKEYIP	9	Unmodified	_AEERKEYIP_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MSMS	HCT116MG_D190212_S3	3	567.7919311523438	2	567.793121	1133.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.357	1	43.052	42.552	43.552	-0.30472								0	0	0	0.76781	1	16176	16176		8.5933	0.68312	1				982	4785	523	527	1007	1007					0.010245202637634065
AEERKVEIAF	10	Unmodified	_AEERKVEIAF_					0	0	0		nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2	nc|ENSG00000055118|Q12809-5|KCNH2	nc|ENSG00000055118|Q12809-5|KCNH2	MULTI-MSMS	HCT116MG_D190212_S3	3	596.736572265625	2	596.322045	1190.62954	0.27855	0.0001661	0.32921	0.00019632	0.60776	0.00036242	596.3221860466253	36.316	0.41619	36.016	35.834	36.25	-0.30042					23	7	4	0	0	0	0.86339	1	13346	13346		6.7232	0.51738	1	86516000			983	1076	524	528	1008	1008					0.04184782189190628
AEERLCFPP	9	Unmodified	_AEERLCFPP_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	530.7565307617188	2	531.257859	1060.50117	0.36317	0.00019293	-0.3661	-0.00019449	-0.0029299	-1.5566E-06	531.2574192641639	28.103	0.26081	27.912	27.774	28.035	-0.19113					8	4	3	0	0	0	0.24195	1	10177	10177		12.532	0	1	5058200			984	5996	525	529	1009	1009					-0.026664763255666912
AEERPWLWVV	10	Unmodified	_AEERPWLWVV_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S2	2	642.8410034179688	2	642.840405	1283.66626	0.65515	0.00042116	-0.048475	-3.1162E-05	0.60668	0.00039	642.840400830184	57.67	0.25886	57.495	57.367	57.626	-0.17494					8	4	2	0	0	0	0.69766	1	22306	22306		20.581	1.3239	1	11319000			985	2954	526	530	1010	1010					0.035770788057106984
AEERTEFLHSQ	11	Unmodified	_AEERTEFLHSQ_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	HCT116MG_D190212_S3	3	449.54931640625	3	449.549357	1345.62624	-0.19889	-8.9412E-05	0.22576	0.00010149	0.026868	1.2079E-05	449.54934130987965	17.686	0.31239	17.768	17.69	18.002	0.081358					10	5	3	0	0	0	0.73536	1	5990	5990		4.4062	4.4062	1	4876300			986	6413	527	531	1011	1011					-0.03274512655457329
AEESGITNSA	10	Unmodified	_AEESGITNSA_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S2	2	489.722412109375	2	489.722361	977.430169	0.31254	0.00015306	0.00081528	3.9926E-07	0.31335	0.00015346	489.72234898847614	22.636	0.25955	22.251	22.103	22.362	-0.3852					9	4	3	0	0	0	0.025359	1	8047	8047		110.67	42.837	1	14492000			987	1618	528	532	1012	1012					-0.05944897829385809
AEESGITNSA	10	Unmodified	_AEESGITNSA_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S2	2	978.4376831054688	1	978.437445	977.430169	0.74131	0.00072532	-0.2306	-0.00022562	0.51071	0.0004997	978.4371115169356	22.669	0.25955	22.284	22.103	22.362	-0.3852					8	4	2	0	0	0	0.0084034	1	8049	8049		157.8	85.873	1	21038000			988	1618	528	532	1013	1013					-0.05944897829385809
AEESGITNSA	10	Unmodified	_AEESGITNSA_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S3	3	978.4375610351562	1	978.437445	977.430169	0.64187	0.00062803	0.0040237	3.9369E-06	0.6459	0.00063197	978.4374700976927	22.38	0.46896	22.38	22.198	22.667	0.00074577					14	8	3	0	0	0	0.0084034	1	7851	7851		157.8	75.905	1	21928000			989	1618	528	532	1014	1014					-0.05944897829385809
AEESGITNSA	10	Unmodified	_AEESGITNSA_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S3	3	489.7223205566406	2	489.722361	977.430169	0.086126	4.2178E-05	0.26294	0.00012877	0.34906	0.00017094	489.72240932420556	22.38	0.46896	22.38	22.198	22.667	0.00074577					18	8	3	0	0	0	0.021264	1	7854	7854		118.07	64.236	1	19352000			990	1618	528	532	1015	1015					-0.05944897829385809
AEESGITNSA	10	Unmodified	_AEESGITNSA_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S4	4	978.4381103515625	1	978.437445	977.430169	0.51389	0.00050281	0.25675	0.00025121	0.77063	0.00075402	978.4378164473449	22.553	0.36441	22.315	22.185	22.55	-0.23758					10	6	2	0	0	0	0.00081686	1	7854	7854		179.17	97.283	1	8436500			991	1618	528	532	1016	1016					-0.05944897829385809
AEESGITNSA	10	Unmodified	_AEESGITNSA_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S4	4	489.722412109375	2	489.722361	977.430169	-0.072268	-3.5391E-05	0.44967	0.00022021	0.3774	0.00018482	489.7224606001938	22.553	0.36441	22.315	22.185	22.55	-0.23758					11	6	2	0	0	0	0.029414	1	7874	7874		103.35	40.781	1	8800200			992	1618	528	532	1017	1017					-0.05944897829385809
AEESGITNSA	10	Unmodified	_AEESGITNSA_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MATCH	HCT116MG_D190212_S1	1		2	489.722361	977.430169	0.31947	0.00015645	-0.72132	-0.00035325	-0.40185	-0.00019679	489.7217554960561	22.364	0.15656	22.364	22.272	22.428	0	0.036633	-0.00092141	NaN	118.07	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2081000			993	1618	528	532							-0.05944897829385809
AEESMHIESP	10	Unmodified	_AEESMHIESP_					0	0	0			REV__NPAT|p.S548Vfs*11|5|0.3|ENSG00000149308|chr11:108173342-108173342|T/-|frameshift_variant	REV__NPAT|p.S548Vfs*11|5|0.3|ENSG00000149308|chr11:108173342-108173342|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	564.8098754882812	2	565.245146	1128.47574	0.39135	0.00022121	-1.9315	-0.0010918	-1.5402	-0.00087059	565.745209064875	21.319	0.51864	20.936	20.494	21.013	-0.38288					14	9	3	0	0	0	0.25173	1	7489	7489		27.629	6.0918	1	9258900	+		994	12563	529	533	1018	1018					-0.08335995638663007
AEESPVDQAP	10	Unmodified	_AEESPVDQAP_					0	0	0			REV__ENST00000576863.1_1_16:3188364-3191345:+|nuORF	REV__ENST00000576863.1_1_16:3188364-3191345:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.2831420898438	2	521.738011	1041.46147	0.20191	0.00010535	-2.1331	-0.0011129	-1.9312	-0.0010076	521.7370251342167	19.048	0.20898	18.679	18.523	18.732	-0.3695					5	3	2	0	0	0	0.29999	1	6526	6526		13.042	2.9685	1	5854500	+		995	16606	530	534	1019	1019					-0.05760324795278393
AEESSKIRA	9	Unmodified	_AEESSKIRA_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	HCT116MG_D190212_S2	2	495.76446533203125	2	495.764363	989.514173	0.29408	0.00014579	0.2723	0.000135	0.56638	0.00028079	495.76454047513147	17.996	0.15656	17.64	17.545	17.702	-0.35647					4	2	2	0	0	0	0.33364	1	6181	6181		27.223	1.8239	1	5569400			996	5693	531	535	1020	1020					0.01899678058180143
AEETKTYSP	9	Unmodified	_AEETKTYSP_					0	0	0		ENST00000356322.10_1_19:52528997-52529066:-|nuORF	ENST00000356322.10_1_19:52528997-52529066:-|nuORF	ENST00000356322.10_1_19:52528997-52529066:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	513.2432250976562	2	513.242929	1024.47131	0.080346	4.1237E-05	0.46797	0.00024018	0.54831	0.00028142	513.2431395571515	20.446	0.78095	20.494	20.051	20.832	0.048107					23	14	2	0	0	0	0.037825	1	7028	7028		80.676	36.818	1	4800700			997	7296	532	536	1021	1021					-0.03995136789922071
AEETKTYSP	9	Unmodified	_AEETKTYSP_					0	0	0		ENST00000356322.10_1_19:52528997-52529066:-|nuORF	ENST00000356322.10_1_19:52528997-52529066:-|nuORF	ENST00000356322.10_1_19:52528997-52529066:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	513.2430419921875	2	513.242929	1024.47131	0.25102	0.00012883	-0.053997	-2.7713E-05	0.19702	0.00010112	513.2429372116003	20.863	0.67521	20.654	20.136	20.811	-0.20959					16	12	2	0	0	0	0.17622	1	7191	7191		43.772	5.7984	1	1287500			998	7296	532	536	1022	1022					-0.03995136789922071
AEETPGSRP	9	Unmodified	_AEETPGSRP_					0	0	0		ENST00000471757.5_1_2:96687909-96690664:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2	ENST00000471757.5_1_2:96687909-96690664:-|nuORF	ENST00000471757.5_1_2:96687909-96690664:-|nuORF	MSMS	HCT116MG_D190212_S2	2	472.2275390625	2	472.227613	942.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.515	1	17.165	16.665	17.665	-0.34933								0	0	0	0.050056	1	5965	5965		70.332	15.558	1				999	5877	533	537	1023	1023					-0.03284870384277383
AEETPGSRP	9	Unmodified	_AEETPGSRP_					0	0	0		ENST00000471757.5_1_2:96687909-96690664:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2	ENST00000471757.5_1_2:96687909-96690664:-|nuORF	ENST00000471757.5_1_2:96687909-96690664:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	472.2276306152344	2	472.227613	942.440674	0.10257	4.8438E-05	0.2488	0.00011749	0.35137	0.00016593	472.22765231191084	16.542	0.3121	16.627	16.445	16.757	0.085424					9	5	2	0	0	0	0.10244	1	5520	5520		57.722	11.701	1	6959200			1000	5877	533	537	1024	1024					-0.03284870384277383
AEETPGSRP	9	Unmodified	_AEETPGSRP_					0	0	0		ENST00000471757.5_1_2:96687909-96690664:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2	ENST00000471757.5_1_2:96687909-96690664:-|nuORF	ENST00000471757.5_1_2:96687909-96690664:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	472.2278137207031	2	472.227613	942.440674	-0.24476	-0.00011558	0.54812	0.00025884	0.30336	0.00014325	472.2278843709601	16.794	0.31161	16.628	16.504	16.815	-0.16664					11	5	3	0	0	0	0.082877	1	5531	5531		61.602	11.669	1	2042200			1001	5877	533	537	1025	1025					-0.03284870384277383
AEETRGRLAA	10	Unmodified	_AEETRGRLAA_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2890014648438	2	537.288537	1072.56252	0.46798	0.00025144	0.94378	0.00050708	1.4118	0.00075852	537.2888728476768	19.335	0.20867	18.966	18.888	19.096	-0.3695					5	3	2	0	0	0	0.32158	1	6723	6723		63.227	31.959	1	10923000			1002	2004	534	538	1026	1026					0.029141716981030186
AEETRGRLAA	10	Unmodified	_AEETRGRLAA_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	HCT116MG_D190212_S3	3	537.28857421875	2	537.288537	1072.56252	0.38989	0.00020948	-0.14892	-8.0013E-05	0.24097	0.00012947	537.2883854730925	18.154	0.20812	18.231	18.101	18.309	0.076334					5	3	2	0	0	0	0.63157	1	6172	6172		29.841	8.3036	1	5008600			1003	2004	534	538	1027	1027					0.029141716981030186
AEETRGRLAA	10	Unmodified	_AEETRGRLAA_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;MYH14|p.M997*|1|0.19|ENSG00000105357|chr19:50271483-50271483|A/-|frameshift_variant	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MSMS	HCT116MG_D190212_S3	3	358.5279235839844	3	358.528117	1072.56252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.231	1	18.307	17.807	18.807	0.076334								0	0	0	0.8848	1	6178	6178		17.863	8.3192	1				1004	2004	534	538	1028	1028					0.029141716981030186
AEETTEMVSA	10	Unmodified	_AEETTEMVSA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S3	3	534.2316284179688	2	534.231704	1066.44886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.267	1	30.018	29.518	30.518	-0.24946								0	0	0	0.5764	1	11025	11025		43.858	21.122	1				1005	3119	535	539	1029	1029					-0.08171104249822747
AEEVWARVA	9	Unmodified	_AEEVWARVA_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7698364257812	2	515.769448	1029.52434	0.35671	0.00018398	0.18774	9.6828E-05	0.54445	0.00028081	515.7695650031311	40.304	0.25987	40.231	40.102	40.361	-0.072838					7	4	2	0	0	0	0.082877	1	15229	15229		61.602	19.762	1	17591000			1006	3964	536	540	1030	1030					0.010762857834379247
AEEVWARVA	9	Unmodified	_AEEVWARVA_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7696533203125	2	515.769448	1029.52434	0.26703	0.00013773	0.11682	6.0251E-05	0.38385	0.00019798	515.7694546917968	40.543	0.25992	40.241	40.059	40.319	-0.30161					9	4	3	0	0	0	0.02327	1	15060	15060		93.166	36.989	1	13824000			1007	3964	536	540	1031	1031					0.010762857834379247
AEEVWARVA	9	Unmodified	_AEEVWARVA_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MSMS	HCT116MG_D190212_S4	4	515.76953125	2	515.769448	1029.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.707	1	40.329	39.829	40.829	-0.37828								0	0	0	0.058768	1	14944	14944		67.838	17.905	1				1008	3964	536	540	1032	1032					0.010762857834379247
AEEVYTRVV	9	Unmodified	_AEEVYTRVV_					0	0	0		nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000477618.1_1_9:74817496-74842957:+|nuORF	nc|ENSG00000119125|Q9Y2T3-2|GDA	nc|ENSG00000119125|Q9Y2T3-2|GDA	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2825317382812	2	533.282389	1064.55022	0.27599	0.00014718	-0.22626	-0.00012066	0.049725	2.6518E-05	533.2822692207154	34.815	0.26027	34.518	34.388	34.648	-0.29707					7	4	2	0	0	0	0.056114	1	12840	12840		71.708	31.758	1	14936000			1009	2626	537	541	1033	1033					0.02053135235018999
AEEVYTRVV	9	Unmodified	_AEEVYTRVV_					0	0	0		nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000477618.1_1_9:74817496-74842957:+|nuORF	nc|ENSG00000119125|Q9Y2T3-2|GDA	nc|ENSG00000119125|Q9Y2T3-2|GDA	MULTI-MSMS	HCT116MG_D190212_S4	4	533.2828369140625	2	533.282389	1064.55022	0.42524	0.00022677	-0.26033	-0.00013883	0.16491	8.7945E-05	533.2823637491824	34.939	0.25491	34.553	34.391	34.646	-0.38605					8	4	2	0	0	0	0.030039	1	12777	12777		86.332	36.399	1	4409000			1010	2626	537	541	1034	1034					0.02053135235018999
AEEWSEAV	8	Unmodified	_AEEWSEAV_					0	0	0			REV__ENST00000475554.5_1_1:16693752-16717062:+|nuORF	REV__ENST00000475554.5_1_1:16693752-16717062:+|nuORF	MSMS	HCT116MG_D190212_S4	4	460.7029724121094	2	460.70344	919.392327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.226	1	29.869	29.369	30.369	-0.3571								0	0	0	0.23148	1	10949	10949		63.563	23.606	1		+		1011	10643	538	542	1035	1035					-0.07059364024189563
AEFAERSVA	9	Unmodified	_AEFAERSVA_					0	0	0		nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28	nc|ENSG00000143549|P06753-4|TPM3;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	HCT116MG_D190212_S1	1	490.2462463378906	2	490.245806	978.47706	0.30809	0.00015104	0.47405	0.0002324	0.78214	0.00038344	490.2460061800583	27.256	0.20847	27.256	27.125	27.334	0					6	3	2	0	0	0	0.07468	1	9906	9906		63.227	0.6548	1	11844000		+	1012	9605;3818;9486	539	543	1036	1036					-0.013039934875791914
AEFAERSVA	9	Unmodified	_AEFAERSVA_					0	0	0		nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28	nc|ENSG00000143549|P06753-4|TPM3;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	HCT116MG_D190212_S2	2	490.2459716796875	2	490.245806	978.47706	0.28431	0.00013938	0.20259	9.932E-05	0.48691	0.0002387	490.24577348208174	27.71	0.25698	27.368	27.243	27.5	-0.34201					10	4	3	0	0	0	0.029121	1	10083	10083		87.258	31.081	1	63799000		+	1013	9605;3818;9486	539	543	1037	1037					-0.013039934875791914
AEFAERSVA	9	Unmodified	_AEFAERSVA_					0	0	0		nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28	nc|ENSG00000143549|P06753-4|TPM3;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	HCT116MG_D190212_S3	3	490.2467041015625	2	490.245806	978.47706	0.28014	0.00013734	0.21058	0.00010323	0.49072	0.00024057	490.24588683408905	27.575	0.72798	27.387	27.101	27.829	-0.18847					21	13	3	0	0	0	0.019537	1	9929	9929		96.936	7.9817	1	65201000		+	1014	9605;3818;9486	539	543	1038	1038					-0.013039934875791914
AEFAERSVA	9	Unmodified	_AEFAERSVA_					0	0	0		nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;TPM3|p.R239H|1|0.1|ENSG00000143549|chr1:154170459-154170459|C/T|missense_variant;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;nc|ENSG00000143549|P06753-7|TPM3;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28	nc|ENSG00000143549|P06753-4|TPM3;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	HCT116MG_D190212_S4	4	490.2462158203125	2	490.245806	978.47706	0.069408	3.4027E-05	0.2389	0.00011712	0.30831	0.00015115	490.24588827357394	27.796	0.40584	27.475	27.252	27.658	-0.32157					16	7	4	0	0	0	0.029121	1	9952	9952		87.258	19.177	1	30748000		+	1015	9605;3818;9486	539	543	1039	1039					-0.013039934875791914
AEFAERTVA	9	Unmodified	_AEFAERTVA_					0	0	0		ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4	ENST00000520239.1_1_8:70042334-70042577:+|nuORF	ENST00000520239.1_1_8:70042334-70042577:+|nuORF	MSMS	HCT116MG_D190212_S1	1	497.2537841796875	2	497.253631	992.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.158	1	28.158	27.658	28.658	0								0	0	0	0.34207	1	10247	10247		37.075	2.6729	1				1016	4921	540	544	1040	1040					-0.003837069705241447
AEFAERTVA	9	Unmodified	_AEFAERTVA_					0	0	0		ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4	ENST00000520239.1_1_8:70042334-70042577:+|nuORF	ENST00000520239.1_1_8:70042334-70042577:+|nuORF	MSMS	HCT116MG_D190212_S2	2	497.2538757324219	2	497.253631	992.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.561	1	28.231	27.731	28.731	-0.32987								0	0	0	0.04525	1	10423	10423		71.708	4.364	1				1017	4921	540	544	1041	1041					-0.003837069705241447
AEFAERTVA	9	Unmodified	_AEFAERTVA_					0	0	0		ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4	ENST00000520239.1_1_8:70042334-70042577:+|nuORF	ENST00000520239.1_1_8:70042334-70042577:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	497.25384521484375	2	497.253631	992.49271	0.43499	0.0002163	-0.016497	-8.203E-06	0.41849	0.0002081	497.25354298288687	28.461	0.57281	28.255	28.125	28.697	-0.20593					15	10	2	0	0	0	0.019537	1	10302	10302		96.936	36.862	1	38312000			1018	4921	540	544	1042	1042					-0.003837069705241447
AEFAEVSK	8	Unmodified	_AEFAEVSK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	440.72393798828125	2	440.724175	879.433798	0.17088	7.5312E-05	0.0038616	1.7019E-06	0.17474	7.7014E-05	440.7240920855158	26.162	0.26085	26.162	26.032	26.293	0					7	4	2	0	0	0	0.1105	1	9451	9451		92.653	44.307	1	9311300		+	1019	554	541	545	1043	1043					-0.010741832648591298
AEFAEVSK	8	Unmodified	_AEFAEVSK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	440.7240905761719	2	440.724175	879.433798	0.27423	0.00012086	0.081187	3.5781E-05	0.35542	0.00015664	440.7240552972983	26.326	0.31266	26.177	25.994	26.307	-0.14924					11	5	3	0	0	0	0.095352	1	9447	9447		96.111	38.64	1	12300000		+	1020	554	541	545	1044	1044					-0.010741832648591298
AEFAEVSK	8	Unmodified	_AEFAEVSK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	440.72406005859375	2	440.724175	879.433798	0.18058	7.9587E-05	0.037692	1.6612E-05	0.21827	9.6199E-05	440.72404569133323	26.56	0.31189	26.26	26.078	26.389	-0.30087					11	5	3	0	0	0	0.065113	1	9469	9469		107.19	39.843	1	12201000		+	1021	554	541	545	1045	1045					-0.010741832648591298
AEFAEVSK	8	Unmodified	_AEFAEVSK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	880.4423217773438	1	880.441074	879.433798	0.73673	0.00064864	0.30508	0.0002686	1.0418	0.00091724	880.4409284551119	26.545	0.20798	26.244	26.13	26.338	-0.30087					5	3	2	0	0	0	0.1105	1	9483	9483		92.653	44.905	1	2373100		+	1022	554	541	545	1046	1046					-0.010741832648591298
AEFAEVSK	8	Unmodified	_AEFAEVSK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MATCH	HCT116MG_D190212_S2	2		2	440.724175	879.433798	0.033077	1.4578E-05	-0.61214	-0.00026979	-0.57907	-0.00025521	440.7238375671211	26.556	0.15605	26.195	26.076	26.232	-0.36164	-0.0034977	-0.00047476	NaN	107.19	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3718000		+	1023	554	541	545							-0.010741832648591298
AEFELPKTM	9	Unmodified	_AEFELPKTM_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MSMS	HCT116MG_D190212_S1	1	533.267578125	2	533.267893	1064.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.354	1	46.354	45.854	46.854	0								0	0	0	0.34992	1	17585	17585		36.506	14.76	1				1024	1527	542	546	1047	1047					-0.00844725385604761
AEFELPKTM	9	Unmodified	_AEFELPKTM_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	533.2678833007812	2	533.267893	1064.52123	0.42171	0.00022489	-0.70627	-0.00037663	-0.28455	-0.00015174	533.2677300695543	46.299	0.46415	46.188	45.853	46.317	-0.11121					17	8	3	0	0	0	0.0051419	1	17615	17615		136.39	85.537	1	39759000			1025	1527	542	546	1048	1048					-0.00844725385604761
AEFELPKTM	9	Unmodified	_AEFELPKTM_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2681274414062	2	533.267893	1064.52123	0.68413	0.00036483	-0.35078	-0.00018706	0.33336	0.00017777	533.267337316361	46.517	0.31246	46.205	46.075	46.387	-0.31237					9	5	2	0	0	0	0.064006	2	17476	17461;17476		67.838	35.721	1	6080900			1026	1527	542	546	1049;1050	1050					-0.00844725385604761
AEFELPKTM	9	Unmodified	_AEFELPKTM_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	533.267893	1064.52123	0.48003	0.00025598	-0.022816	-1.2167E-05	0.45721	0.00024382	533.267844130824	46.18	0.25851	46.18	46.079	46.337	0	-0.010725	0.00044179	NaN	136.39	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9362800			1027	1527	542	546							-0.00844725385604761
AEFGDEWP	8	Unmodified	_AEFGDEWP_					0	0	0			REV__nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	REV__nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	MULTI-MSMS	HCT116MG_D190212_S3	3	475.6986389160156	2	475.698158	949.381762	0.20738	9.8651E-05	-0.80739	-0.00038407	-0.60001	-0.00028542	475.6982358713042	18.494	0.88474	18.57	18.361	19.246	0.076334					20	16	2	0	0	0	0.73076	1	6326	6326		19.439	1.2926	1	3513200	+		1028	13147	543	547	1051	1051					-0.09495346678613714
AEFGGAARGP	10	Unmodified	_AEFGGAARGP_					0	0	0			REV__ENST00000564161.1_1_16:88690785-88691832:+|nuORF	REV__ENST00000564161.1_1_16:88690785-88691832:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	466.73291015625	2	466.732866	931.451179	0.16115	7.5214E-05	0.14073	6.5684E-05	0.30188	0.0001409	466.7328514737097	21.267	0.62263	20.884	20.443	21.065	-0.38288					19	11	2	0	0	0	0.4604	1	7426	7426		37.974	5.6685	1	16540000	+		1029	16521	544	548	1052	1052					-0.017288429392010585
AEFGGAARGP	10	Unmodified	_AEFGGAARGP_					0	0	0			REV__ENST00000564161.1_1_16:88690785-88691832:+|nuORF	REV__ENST00000564161.1_1_16:88690785-88691832:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	467.253662109375	2	466.732866	931.451179	0.13761	6.4226E-05	0.02988	1.3946E-05	0.16749	7.8172E-05	466.7327760947027	20.966	1.0445	21.001	20.454	21.499	0.034473					43	19	3	0	0	0	0.71349	1	7401	7401		19.257	1.122	1	22946000	+		1030	16521	544	548	1053	1053					-0.017288429392010585
AEFGQAESA	9	Unmodified	_AEFGQAESA_					0	0	0		ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	909.3955078125	1	909.394852	908.387576	0.85021	0.00077318	-0.23861	-0.00021699	0.61161	0.00055619	909.394571902886	27.731	0.36396	27.543	27.361	27.725	-0.18847					8	6	2	0	0	0	0.0062667	1	10012	10012		126.57	51.637	1	10519000			1031	4410	545	549	1054	1054					-0.07028248166955109
AEFGQAESA	9	Unmodified	_AEFGQAESA_					0	0	0		ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	909.39501953125	1	909.394852	908.387576	0.73688	0.00067012	-0.031293	-2.8458E-05	0.70559	0.00064166	909.3946687621616	27.849	0.30683	27.528	27.351	27.658	-0.32157					7	5	2	0	0	0	0.069315	1	10017	10017		65.235	23.14	1	5411100			1032	4410	545	549	1055	1055					-0.07028248166955109
AEFGQAESA	9	Unmodified	_AEFGQAESA_					0	0	0		ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	909.394852	908.387576	0.69299	0.0006302	-0.24042	-0.00021864	0.45257	0.00041157	909.3948970983342	27.766	0.20484	27.424	27.295	27.5	-0.34201	-0.074424	-6.0633E-05	NaN	126.57	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11982000			1033	4410	545	549							-0.07028248166955109
AEFHQIEGVVA	11	Unmodified	_AEFHQIEGVVA_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MSMS	HCT116MG_D190212_S2	2	600.3073120117188	2	600.306395	1198.59824	0.48204	0.00028937	0.21035	0.00012627	0.69239	0.00041565	600.3061222701263	39.909	0.25792	39.836	39.687	39.945	-0.072838					6	4	2	0	0	0	0.70591	1	15063	15063		19.626	5.7199	1	14085000			1034	5537	546	550	1056	1056					0.006882091551005942
AEFLDKHVT	9	Unmodified	_AEFLDKHVT_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2767944335938	2	530.277106	1058.53966	0.71873	0.00038112	-1.6477	-0.00087374	-0.92897	-0.00049261	530.2763618087573	29.631	0.30998	29.33	29.185	29.495	-0.30095					9	5	3	0	0	0	0.31258	1	10889	10889		29.437	0.35557	1	8973200			1035	1382	547	551	1057	1057					0.012731525806202626
AEFLQKLLP	9	Unmodified	_AEFLQKLLP_					0	0	0		ENST00000486048.2_1_1:151204736-151206704:+|nuORF;PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000107242|O14986-3|PIP5K1B;nc|ENSG00000143398|Q99755-4|PIP5K1A;PIP5K1C|p.A494Gfs*44|1|0.16|ENSG00000186111|chr19:3644116-3644117|-/C|frameshift_variant;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000107242|O14986-2|PIP5K1B;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	529.8163452148438	2	529.815867	1057.61718	0.48329	0.00025606	-0.0089919	-4.7641E-06	0.4743	0.00025129	529.8158675430893	55.694	0.25944	55.509	55.327	55.587	-0.18565					10	4	3	0	0	0	0.026999	1	21484	21484		89.401	26.828	1	45528000			1036	2107	548	552	1058	1058					0.09067790516814966
AEFLQKLLP	9	Unmodified	_AEFLQKLLP_					0	0	0		ENST00000486048.2_1_1:151204736-151206704:+|nuORF;PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000107242|O14986-3|PIP5K1B;nc|ENSG00000143398|Q99755-4|PIP5K1A;PIP5K1C|p.A494Gfs*44|1|0.16|ENSG00000186111|chr19:3644116-3644117|-/C|frameshift_variant;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000107242|O14986-2|PIP5K1B;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.8162231445312	2	529.815867	1057.61718	0.51946	0.00027522	-0.062382	-3.3051E-05	0.45707	0.00024216	529.8156815409542	55.78	0.31914	55.492	55.304	55.623	-0.28773					10	5	2	0	0	0	0.016744	1	21169	21169		99.755	27.833	1	4176700			1037	2107	548	552	1059	1059					0.09067790516814966
AEFMWMQP	8	Unmodified	_AEFMWMQP_					0	0	0			REV__ENST00000378024.8_2_11:62290097-62290190:-|nuORF	REV__ENST00000378024.8_2_11:62290097-62290190:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	520.2217407226562	2	520.222431	1038.43031	0.25033	0.00013023	-1.5779	-0.00082087	-1.3276	-0.00069064	520.2214414143727	22.53	0.25972	22.296	22.138	22.398	-0.2332					6	4	2	0	0	0	0.8506	1	7881	7881		5.2307	0.47466	1	1826700	+		1038	15245	549	553	1060	1060					-0.08736892634715332
AEFQVKITA	9	Unmodified	_AEFQVKITA_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	HCT116MG_D190212_S1	1	503.7825622558594	2	503.782025	1005.5495	0.6038	0.00030418	1.4152	0.00071294	2.019	0.0010171	503.7823417836924	41.367	0.26017	41.367	41.185	41.445	0					6	4	2	0	0	0	0.035298	1	15602	15602		81.915	46.983	1	16306000			1039	9548	550	554	1061	1061					0.046943405859906306
AEFQVKITA	9	Unmodified	_AEFQVKITA_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	HCT116MG_D190212_S2	2	503.78179931640625	2	503.782025	1005.5495	0.52091	0.00026243	0.10787	5.4343E-05	0.62878	0.00031677	503.78195893353114	41.42	0.5139	41.352	41.191	41.705	-0.068199					12	9	2	0	0	0	0.0068462	1	15660	15660		121.5	73.755	1	46887000			1040	9548	550	554	1062	1062					0.046943405859906306
AEFRAQLDP	9	Unmodified	_AEFRAQLDP_					0	0	0		nc|ENSG00000128309|P25325|MPST;ENST00000485587.1_1_22:37419962-37421138:+|nuORF;ENSG00000128309|ENST00000429360|MPST	nc|ENSG00000128309|P25325|MPST	nc|ENSG00000128309|P25325|MPST	MSMS	HCT116MG_D190212_S2	2	523.7660522460938	2	523.766906	1045.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.9	1	18.533	18.033	19.033	-0.36728								0	0	0	0.35515	1	6523	6523		36.127	1.7253	1				1041	2993	551	555	1063	1063					-0.0016801807919364364
AEFSKTWEF	9	Unmodified	_AEFSKTWEF_					0	0	0		nc|ENSG00000163590|Q5SGD2-4|PPM1L;ENSG00000163590|ENST00000498165|PPM1L	nc|ENSG00000163590|Q5SGD2-4|PPM1L	nc|ENSG00000163590|Q5SGD2-4|PPM1L	MSMS	HCT116MG_D190212_S2	2	572.6963500976562	2	572.769114	1143.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.345	1	51.167	50.667	51.667	-0.17868								0	0	0	0.2496	1	19698	19698		43.772	25.626	1				1042	4611	552	556	1064	1064					-0.04234553656283424
AEGAAALAA	9	Unmodified	_AEGAAALAA_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	744.389404296875	1	744.388645	743.381368	1.2233	0.0009106	0.48175	0.00035861	1.705	0.0012692	744.3888764386959	29.417	0.25777	29.116	28.979	29.237	-0.30095					6	4	2	0	0	0	0.050578	1	10793	10793		74.423	7.3874	1	13866000			1043	9115	553	557	1065	1065					-0.0005872160783155778
AEGAAALAA	9	Unmodified	_AEGAAALAA_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	744.3897094726562	1	744.388645	743.381368	0.6055	0.00045073	0.49736	0.00037023	1.1029	0.00082095	744.3888987201265	29.45	0.41718	29.213	29.031	29.448	-0.23655					11	7	2	0	0	0	0.050578	1	10705	10705		74.423	0.026461	1	11252000			1044	9115	553	557	1066	1066					-0.0005872160783155778
AEGAAALAA	9	Unmodified	_AEGAAALAA_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	744.388645	743.381368	0.81737	0.00060844	0.47323	0.00035227	1.2906	0.00096071	744.3888892760323	29.58	0.31204	29.231	29.033	29.345	-0.34921	0.04412	-6.4057E-06	NaN	74.423	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3502500			1045	9115	553	557							-0.0005872160783155778
AEGAEEDGRG	10	Unmodified	_AEGAEEDGRG_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	HCT116MG_D190212_S4	4	495.7092590332031	2	495.709785	989.405017	0.30497	0.00015118	-1.6084	-0.00079729	-1.3034	-0.00064611	495.7089667184299	31.11	0.30911	30.74	30.61	30.919	-0.37026					6	5	2	0	0	0	0.76634	1	11288	11288		14.838	0.93222	1	3294800			1046	2975	554	558	1067	1067					-0.09010952631933833
AEGAEGEARP	10	Unmodified	_AEGAEGEARP_					0	0	0		nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3	nc|ENSG00000256463|Q9BXA9-2|SALL3	nc|ENSG00000256463|Q9BXA9-2|SALL3	MULTI-MSMS	HCT116MG_D190212_S2	2	493.73101806640625	2	493.73052	985.446488	0.26378	0.00013024	0.4744	0.00023423	0.73818	0.00036446	493.7307456331073	16.428	0.26075	16.086	15.943	16.204	-0.34183					7	4	2	0	0	0	0.31047	1	5539	5539		49.554	3.8547	1	4168300			1047	6611	555	559	1068	1068					-0.04681771872617446
AEGAEGEARP	10	Unmodified	_AEGAEGEARP_					0	0	0		nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3	nc|ENSG00000256463|Q9BXA9-2|SALL3	nc|ENSG00000256463|Q9BXA9-2|SALL3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	493.73052	985.446488	0.32053	0.00015825	-0.24767	-0.00012228	0.07286	3.5973E-05	493.7304669432248	16.135	0.20852	16.135	16.004	16.213	0	0.024154	-0.00063998	NaN	49.554	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1227200			1048	6611	555	559							-0.04681771872617446
AEGAFLAEA	9	Unmodified	_AEGAFLAEA_					0	0	0		nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687;ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant	nc|ENSG00000143373|Q8N1G0-2|ZNF687	nc|ENSG00000143373|Q8N1G0-2|ZNF687	MULTI-MSMS	HCT116MG_D190212_S3	3	878.4261474609375	1	878.425424	877.418148	0.86456	0.00075945	0.39281	0.00034505	1.2574	0.0011045	878.4257237795726	45.642	0.46909	45.331	44.992	45.461	-0.31094					16	8	2	0	0	0	0.16144	1	17064	17064		46.021	0	1	11104000			1049	3804	556	560	1069	1069					-0.0254646978190749
AEGAFPNLA	9	Unmodified	_AEGAFPNLA_					0	0	0		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	HCT116MG_D190212_S2	2	889.4414672851562	1	889.441409	888.434132	0.86508	0.00076944	-0.53889	-0.00047931	0.32619	0.00029012	889.4409103779074	46.299	0.41196	46.188	45.957	46.369	-0.11121					14	7	2	0	0	0	0.010834	1	17600	17600		111.29	56.513	1	54865000			1050	4469	557	561	1070	1070					-0.014547635450185226
AEGAFPNLA	9	Unmodified	_AEGAFPNLA_					0	0	0		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	HCT116MG_D190212_S3	3	889.4429931640625	1	889.441409	888.434132	1.0964	0.00097515	-0.39348	-0.00034998	0.70288	0.00062517	889.4410935990287	46.477	0.49736	46.164	45.942	46.439	-0.31237					20	9	3	0	0	0	0.010834	2	17396	17396;17462		111.29	56.513	1	17977000			1051	4469	557	561	1071;1072	1071					-0.014547635450185226
AEGAFPNLA	9	Unmodified	_AEGAFPNLA_					0	0	0		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	HCT116MG_D190212_S4	4	889.442138671875	1	889.441409	888.434132	0.86728	0.00077139	-0.25852	-0.00022993	0.60876	0.00054146	889.4412213667381	46.514	0.40632	46.143	45.974	46.38	-0.37134					15	9	2	0	0	0	0.027442	1	17173	17173		88.954	50.803	1	7709500			1052	4469	557	561	1073	1073					-0.014547635450185226
AEGAGAPAA	9	Unmodified	_AEGAGAPAA_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-4|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	714.34228515625	1	714.341694	713.334418	0.93921	0.00067092	-0.40001	-0.00028574	0.5392	0.00038517	714.3415907421033	18.032	0.3131	17.676	17.545	17.858	-0.35647					7	5	2	0	0	0	0.031005	1	6199	6199		85.357	18.321	1	5039800			1053	3322	558	562	1074	1074					-0.03371581158955905
AEGAGAPAA	9	Unmodified	_AEGAGAPAA_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-4|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	HCT116MG_D190212_S3	3	714.3417358398438	1	714.341694	713.334418	0.31794	0.00022712	0.10313	7.367E-05	0.42107	0.00030079	714.341568625112	17.52	0.25987	17.601	17.482	17.742	0.081358					7	4	2	0	0	0	0.050578	1	5906	5906		74.423	10.186	1	2914400			1054	3322	558	562	1075	1075					-0.03371581158955905
AEGAGRHHVP	10	Unmodified	_AEGAGRHHVP_					0	0	0		ENST00000453867.6_3_15:40545446-40557015:+|nuORF	ENST00000453867.6_3_15:40545446-40557015:+|nuORF	ENST00000453867.6_3_15:40545446-40557015:+|nuORF	MSMS	HCT116MG_D190212_S3	3	515.761474609375	2	515.762489	1029.51043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.322	1	19.381	18.881	19.881	0.05983								0	0	0	0.87399	1	6618	6618		19.257	1.1106	1				1055	8006	559	563	1076	1076					-0.0031494692502747057
AEGAPQVEA	9	Unmodified	_AEGAPQVEA_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	871.416748046875	1	871.415588	870.408311	0.83391	0.00072668	-0.070938	-6.1816E-05	0.76297	0.00066487	871.4157757730222	25.78	0.31227	25.49	25.308	25.62	-0.29022					8	5	2	0	0	0	0.032914	1	9178	9178		83.429	33.496	1	4141500			1056	315	560	564	1077	1077					-0.03207657787288554
AEGAQTRP	8	Unmodified	_AEGAQTRP_					0	0	0			REV__ENST00000478260.5_1_11:3108637-3108949:-|nuORF	REV__ENST00000478260.5_1_11:3108637-3108949:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	415.2116394042969	2	415.211766	828.40898	-0.18383	-7.6329E-05	0.25019	0.00010388	0.06636	2.7554E-05	415.211667428418	14.883	0.3127	14.563	14.401	14.714	-0.31952					9	5	2	0	0	0	0.557	1	4901	4901		36.127	0	1	844020	+		1057	15932	561	565	1078	1078					-0.0120881834757256
AEGAVGYQP	9	Unmodified	_AEGAVGYQP_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	HCT116MG_D190212_S3	3	891.4218139648438	1	891.420673	890.413397	1.0942	0.00097538	0.14149	0.00012613	1.2357	0.0011015	891.4206684618778	28.787	0.57275	28.565	28.265	28.838	-0.22195					15	10	2	0	0	0	0.14171	1	10461	10461		49.933	1.5872	1	3189100			1058	1424	562	566	1079	1079					-0.03619353924659663
AEGDISNVA	9	Unmodified	_AEGDISNVA_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	HCT116MG_D190212_S3	3	875.4110107421875	1	875.410502	874.403226	0.69592	0.00060921	0.12813	0.00011217	0.82405	0.00072138	875.4105009496307	28.252	0.574	28.046	27.811	28.385	-0.20593					20	10	3	0	0	0	0.027492	1	10203	10203		88.904	17.77	1	32864000			1059	232	563	567	1080	1080					-0.03899961649904071
AEGDISNVA	9	Unmodified	_AEGDISNVA_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	HCT116MG_D190212_S4	4	875.4118041992188	1	875.410502	874.403226	0.75845	0.00066396	0.056581	4.9531E-05	0.81503	0.00071349	875.41064236295	28.327	0.36441	27.996	27.804	28.168	-0.33138					14	6	3	0	0	0	0.027492	1	10184	10184		88.904	24.667	1	8073300			1060	232	563	567	1081	1081					-0.03899961649904071
AEGDPLFLY	9	Unmodified	_AEGDPLFLY_					0	0	0			REV__ENST00000558161.5_1_15:91454616-91456971:+|nuORF	REV__ENST00000558161.5_1_15:91454616-91456971:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	512.7055053710938	2	512.752933	1023.49131	0.22717	0.00011648	0.29182	0.00014963	0.51899	0.00026611	513.2554618940742	29.84	0.3612	29.539	29.392	29.753	-0.30095					8	6	2	0	0	0	0.24195	1	11013	11013		18.135	2.2878	1	9754000	+		1061	14033	564	568	1082	1082					-0.01949341059287235
AEGDPLFLY	9	Unmodified	_AEGDPLFLY_					0	0	0			REV__ENST00000558161.5_1_15:91454616-91456971:+|nuORF	REV__ENST00000558161.5_1_15:91454616-91456971:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	512.752933	1023.49131	0.52286	0.0002681	-0.47612	-0.00024413	0.046734	2.3963E-05	512.7512108331762	29.467	0.26027	29.467	29.321	29.581	0	-0.03591	-0.00052039	NaN	18.135	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5674900	+		1062	14033	564	568							-0.01949341059287235
AEGEAFIQA	9	Unmodified	_AEGEAFIQA_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant;PPL|p.Q990Rfs*31|1|0.12|ENSG00000118898|chr16:4885688-4885688|C/-|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	HCT116MG_D190212_S3	3	935.4476928710938	1	935.446888	934.439611	0.72249	0.00067585	-0.092672	-8.669E-05	0.62982	0.00058916	935.4470942198391	40.479	0.20774	40.177	40.059	40.267	-0.30161					5	3	2	0	0	0	0.049545	1	15042	15042		74.929	22.661	1	5245600			1063	2618	565	569	1083	1083					-0.030230847531925065
AEGEDEESVS	10	Unmodified	_AEGEDEESVS_					0	0	0		ENSG00000176746|ENST00000379034|MAGEB6	ENSG00000176746|ENST00000379034|MAGEB6	ENSG00000176746|ENST00000379034|MAGEB6	MSMS	HCT116MG_D190212_S2	2	525.782958984375	2	526.206741	1050.39893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.263	1	44.184	43.684	44.684	-0.078373								0	0	0	0.91279	1	16807	16807		13.042	1.4022	1				1064	5432	566	570	1084	1084					-0.12425515654126684
AEGEKRADIQ	10	Unmodified	_AEGEKRADIQ_					0	0	0		ENST00000595108.5_1_19:6733949-6737021:-|nuORF	ENST00000595108.5_1_19:6733949-6737021:-|nuORF	ENST00000595108.5_1_19:6733949-6737021:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	558.7860717773438	2	558.785827	1115.5571	0.6228	0.00034801	-0.25891	-0.00014467	0.36389	0.00020334	558.7857737902237	17.333	0.20874	17.333	17.202	17.411	0					6	3	2	0	0	0	0.84626	1	5919	5919		8.1555	0.54658	1	3840600			1065	9058	567	571	1085	1085					0.003944481156167967
AEGEKRADIQ	10	Unmodified	_AEGEKRADIQ_					0	0	0		ENST00000595108.5_1_19:6733949-6737021:-|nuORF	ENST00000595108.5_1_19:6733949-6737021:-|nuORF	ENST00000595108.5_1_19:6733949-6737021:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	558.785827	1115.5571	0.6228	0.00034801	-0.25891	-0.00014467	0.36389	0.00020334	558.7857737902237	17.333	0.20874	17.333	17.202	17.411	0	0	0	NaN	8.1555	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3840600			1066	9058	567	571							0.003944481156167967
AEGEQGWPDGP	11	Unmodified	_AEGEQGWPDGP_					0	0	0			REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	571.7757568359375	2	571.741085	1141.46762	0.35171	0.00020109	1.7103	0.00097786	2.062	0.0011789	571.7429104524248	19.855	0.20715	19.48	19.351	19.558	-0.37503					8	3	3	0	0	0	0.71532	1	6864	6864		16.149	3.1066	1	10298000	+		1067	14306	568	572	1086	1086					-0.09745806563751103
AEGERHPPSV	10	Unmodified	_AEGERHPPSV_					0	0	0			REV__ENSG00000163624|ENST00000295887|CDS1	REV__ENSG00000163624|ENST00000295887|CDS1	MSMS	HCT116MG_D190212_S2	2	539.7673950195312	2	539.767437	1077.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.399	1	15.072	14.572	15.572	-0.32684								0	0	0	0.91638	1	5113	5113		12.241	0.74595	1		+		1068	12936	569	573	1087	1087					-0.01533803710299253
AEGERQPPP	9	Unmodified	_AEGERQPPP_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENST00000414331.5_1_9:131873765-131885338:+|nuORF	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MSMS	HCT116MG_D190212_S1	1	490.9078063964844	2	490.743431	979.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.917	1	15.917	15.417	16.417	0								0	0	0	0.44802	1	5322	5322		31.268	8.1199	1				1069	2636	570	574	1088	1088					-0.01824877630338051
AEGERQPPP	9	Unmodified	_AEGERQPPP_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENST00000414331.5_1_9:131873765-131885338:+|nuORF	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MULTI-MSMS	HCT116MG_D190212_S2	2	490.7435302734375	2	490.743431	979.472308	0.20466	0.00010043	0.14597	7.1633E-05	0.35063	0.00017207	490.7432841583987	16.298	0.99146	15.958	15.37	16.362	-0.34002					23	18	2	0	0	0	0.35128	1	5452	5452		25.399	9.5521	1	4375800			1070	2636	570	574	1089	1089					-0.01824877630338051
AEGERQPPP	9	Unmodified	_AEGERQPPP_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENST00000414331.5_1_9:131873765-131885338:+|nuORF	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MULTI-MATCH	HCT116MG_D190212_S1	1		2	490.743431	979.472308	0.30496	0.00014966	-1.3235	-0.0006495	-1.0185	-0.00049985	490.7435782730523	16.11	0.20852	16.11	16.004	16.213	0	0.07569	-0.0013491	NaN	25.399	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	736090			1071	2636	570	574							-0.01824877630338051
AEGGASRFSA	10	Unmodified	_AEGGASRFSA_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000533485.1_1_11:10828341-10828950:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S1	1	476.7277526855469	2	476.727781	951.441008	0.21656	0.00010324	0.17528	8.3562E-05	0.39185	0.0001868	476.7277043277646	23.915	0.2613	23.915	23.784	24.045	0					8	4	2	0	0	0	0.14756	1	8562	8562		64.692	17.097	1	10662000			1072	2243	571	575	1090	1090					-0.03665450664425407
AEGGASRFSA	10	Unmodified	_AEGGASRFSA_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000533485.1_1_11:10828341-10828950:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S2	2	476.72772216796875	2	476.727781	951.441008	0.35545	0.00016945	-0.068825	-3.2811E-05	0.28662	0.00013664	476.72769480134195	24.489	0.31287	24.108	23.926	24.239	-0.38003					13	5	3	0	0	0	0.026695	1	8770	8770		108.26	52.759	1	65794000			1073	2243	571	575	1091	1091					-0.03665450664425407
AEGGASRFSA	10	Unmodified	_AEGGASRFSA_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000533485.1_1_11:10828341-10828950:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S2	2	952.4501342773438	1	952.448285	951.441008	0.76078	0.0007246	1.2561	0.0011964	2.0169	0.001921	952.4499808365904	24.489	0.31306	24.108	23.979	24.292	-0.38003					6	5	2	0	0	0	0.226	1	8796	8796		57.108	22.176	1	7368000			1074	2243	571	575	1092	1092					-0.03665450664425407
AEGGASRFSA	10	Unmodified	_AEGGASRFSA_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000533485.1_1_11:10828341-10828950:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S3	3	476.7277526855469	2	476.727781	951.441008	0.12328	5.8771E-05	0.12965	6.1806E-05	0.25293	0.00012058	476.7277608636014	23.93	0.41682	23.869	23.739	24.155	-0.061449					15	7	3	0	0	0	0.026695	1	8475	8475		108.26	44.302	1	31609000			1075	2243	571	575	1093	1093					-0.03665450664425407
AEGGASRFSA	10	Unmodified	_AEGGASRFSA_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000533485.1_1_11:10828341-10828950:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S3	3	952.449951171875	1	952.448285	951.441008	0.70173	0.00066836	0.43477	0.0004141	1.1365	0.0010825	952.4495122845622	23.948	0.31275	23.887	23.739	24.051	-0.061447					7	5	2	0	0	0	0.45124	1	8513	8513		38.615	13.624	1	1583800			1076	2243	571	575	1094	1094					-0.03665450664425407
AEGGASRFSA	10	Unmodified	_AEGGASRFSA_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000533485.1_1_11:10828341-10828950:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S4	4	476.7279357910156	2	476.727781	951.441008	0.68199	0.00032512	-0.53185	-0.00025355	0.15014	7.1574E-05	476.72745908052616	24.268	0.25957	24.01	23.833	24.093	-0.25816					9	4	3	0	0	0	0.09647	1	8545	8545		74.772	23.142	1	4897500			1077	2243	571	575	1095	1095					-0.03665450664425407
AEGGDIYG	8	Unmodified	_AEGGDIYG_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	HCT116MG_D190212_S1	1	781.3363647460938	1	781.336275	780.328998	0.81661	0.00063805	-0.25494	-0.00019919	0.56168	0.00043886	781.3359985170268	27.256	0.20847	27.256	27.125	27.334	0					5	3	2	0	0	0	0.46267	1	9891	9891		44.407	1.439	1	5083200			1078	4129	572	576	1096	1096					-0.06995304741428754
AEGGGGGLKRE	11	Unmodified	_AEGGGGGLKRE_					0	0	0		ENSG00000123407|ENST00000243103|HOXC12	ENSG00000123407|ENST00000243103|HOXC12	ENSG00000123407|ENST00000243103|HOXC12	MULTI-SECPEP	HCT116MG_D190212_S2	2	516.2531127929688	2	515.767437	1029.52032	0.22908	0.00011815	0.57369	0.00029589	0.80277	0.00041404	515.7675644205466	17.614	0.20877	17.258	17.127	17.336	-0.35647					5	3	2	0	0	0	0.33772	1	6022	6022		18.373	0	1	6456500			1079	2802	573	577	1097	1097					0.006741962897194753
AEGGGLFVGA	10	Unmodified	_AEGGGLFVGA_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	877.4410400390625	1	877.441409	876.434132	0.79318	0.00069597	-0.042869	-3.7615E-05	0.75032	0.00065836	877.4411685516021	46.831	0.41496	46.831	46.647	47.062	0					14	7	3	0	0	0	0.13038	1	17769	17769		68.081	10.609	1	63396000			1080	6231	574	578	1098	1098					-0.009027635450024718
AEGGGLFVGA	10	Unmodified	_AEGGGLFVGA_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	877.4419555664062	1	877.441409	876.434132	1.2521	0.0010986	0.24148	0.00021188	1.4935	0.0013105	877.4414608563044	46.885	0.61825	46.769	46.519	47.137	-0.11512					24	11	3	0	0	0	0.095673	1	17850	17850		74.929	17.458	1	253870000			1081	6231	574	578	1099	1099					-0.009027635450024718
AEGGGLFVGA	10	Unmodified	_AEGGGLFVGA_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	877.4415893554688	1	877.441409	876.434132	0.77516	0.00068016	0.04801	4.2126E-05	0.82317	0.00072229	877.4412899202246	47.143	0.53734	46.829	46.594	47.131	-0.31405					18	10	3	0	0	0	0.13038	1	17677	17677		68.081	17.226	1	47718000			1082	6231	574	578	1100	1100					-0.009027635450024718
AEGGGLFVGA	10	Unmodified	_AEGGGLFVGA_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	439.22430419921875	2	439.224342	876.434132	0.14915	6.551E-05	0.45168	0.00019839	0.60083	0.0002639	439.2244458716806	47.157	0.31258	46.843	46.646	46.959	-0.31405					9	5	2	0	0	0	0.43205	1	17701	17701		39.957	1.8061	1	8417700			1083	6231	574	578	1101	1101					-0.009027635450024718
AEGGGLFVGA	10	Unmodified	_AEGGGLFVGA_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	877.441409	876.434132	0.96517	0.00084688	-0.36586	-0.00032102	0.59931	0.00052586	877.4410500592859	47.193	0.251	46.822	46.693	46.944	-0.37038	0.0093236	-0.00037859	NaN	74.929	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6929500			1084	6231	574	578							-0.009027635450024718
AEGGGRLQA	9	Unmodified	_AEGGGRLQA_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MSMS	HCT116MG_D190212_S2	2	429.72509765625	2	429.725041	857.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.821	1	20.44	19.94	20.94	-0.38092								0	0	0	0.10186	1	7295	7295		55.503	5.9485	1				1085	2400	575	579	1102	1102					0.001108705437673052
AEGGMTAVV	9	Unmodified	_AEGGMTAVV_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-MSMS	HCT116MG_D190212_S3	3	834.4020385742188	1	834.40258	833.395304	0.87003	0.00072595	-0.44296	-0.00036961	0.42706	0.00035634	834.4019797821024	38.022	0.26807	37.721	37.617	37.885	-0.30137					9	6	2	0	0	0	0.11731	1	14088	14088		54.774	11.806	1	7598800			1086	2250	576	580	1103	1103					-0.028058121710273554
AEGGMTAVV	9	Unmodified	_AEGGMTAVV_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	834.40258	833.395304	0.56969	0.00047535	-0.11687	-9.7518E-05	0.45282	0.00037784	834.4023817459608	37.82	0.20599	37.727	37.599	37.805	-0.09301	0.0032955	2.8033E-05	NaN	54.774	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18883000			1087	2250	576	580							-0.028058121710273554
AEGGTARPGAP	11	Unmodified	_AEGGTARPGAP_					0	0	0		ENST00000561585.1_1_16:89940059-89940164:+|nuORF	ENST00000561585.1_1_16:89940059-89940164:+|nuORF	ENST00000561585.1_1_16:89940059-89940164:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	492.2489013671875	2	492.24888	982.483208	0.17883	8.8031E-05	0.13892	6.8384E-05	0.31775	0.00015641	492.24888423620956	15.251	0.83286	15.334	15.09	15.923	0.083271					37	15	3	0	0	0	0.70991	1	5196	5196		18.146	2.2992	1	12310000			1088	8817	577	581	1104	1104					-0.008734752560485504
AEGHYCSSQP	10	Unmodified	_AEGHYCSSQP_					0	0	0		ENST00000457824.5_1_20:42157318-42157847:+|nuORF	ENST00000457824.5_1_20:42157318-42157847:+|nuORF	ENST00000457824.5_1_20:42157318-42157847:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7161865234375	2	539.716556	1077.41856	0.42986	0.000232	0.10721	5.7861E-05	0.53707	0.00028987	539.7163375643614	21.246	0.25838	20.863	20.755	21.013	-0.38288					6	4	2	0	0	0	0.67188	1	7490	7490		22.736	3.3743	1	8275400			1089	8033	578	582	1105	1105					-0.11705418124347489
AEGIGIRQP	9	Unmodified	_AEGIGIRQP_					0	0	0		ENST00000482570.5_1_2:3261147-3261237:-|nuORF;ENST00000382125.8_1_2:3261147-3341801:-|nuORF;ENST00000398659.8_2_2:3261147-3341801:-|nuORF	ENST00000482570.5_1_2:3261147-3261237:-|nuORF	ENST00000482570.5_1_2:3261147-3261237:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	470.7646179199219	2	470.764166	939.513779	0.11698	5.507E-05	0.028231	1.329E-05	0.14521	6.836E-05	470.7641815235202	31.178	0.57379	30.917	30.5	31.074	-0.26071					15	10	2	0	0	0	0.071914	1	11406	11406		63.961	22.121	1	2326100			1090	7581	579	583	1106	1106					0.04160303129003751
AEGIKVTDA	9	Unmodified	_AEGIKVTDA_					0	0	0		CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant;ENSG00000168564|ENST00000504169|CDKN2AIP	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	452.24267578125	2	452.242732	902.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.745	1	26.745	26.245	27.245	0								0	0	0	0.034768	1	9676	9676		78.06	36.221	1				1091	395	580	584	1107	1107					0.015774882809068913
AEGIKVTDA	9	Unmodified	_AEGIKVTDA_					0	0	0		CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant;ENSG00000168564|ENST00000504169|CDKN2AIP	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	452.2428894042969	2	452.242732	902.470912	0.21223	9.5979E-05	0.11773	5.3244E-05	0.32996	0.00014922	452.24270185251066	27.092	0.42044	26.739	26.554	26.975	-0.35254					10	7	2	0	0	0	0.0081783	1	9832	9832		117.84	61.661	1	62304000			1092	395	580	584	1108	1108					0.015774882809068913
AEGIKVTDA	9	Unmodified	_AEGIKVTDA_					0	0	0		CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant;ENSG00000168564|ENST00000504169|CDKN2AIP	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	903.479248046875	1	903.478188	902.470912	0.9237	0.00083454	0.17837	0.00016115	1.1021	0.00099569	903.4782322747654	27.092	0.21259	26.739	26.606	26.818	-0.35254					5	3	2	0	0	0	0.029121	1	9857	9857		87.258	27.184	1	12712000			1093	395	580	584	1109	1109					0.015774882809068913
AEGIKVTDA	9	Unmodified	_AEGIKVTDA_					0	0	0		CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant;ENSG00000168564|ENST00000504169|CDKN2AIP	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	452.2428894042969	2	452.242732	902.470912	0.1972	8.9183E-05	0.075544	3.4164E-05	0.27275	0.00012335	452.2426822053314	26.95	0.41686	26.781	26.599	27.016	-0.16933					18	7	3	0	0	0	0.0081783	1	9677	9677		117.84	60.116	1	37648000			1094	395	580	584	1110	1110					0.015774882809068913
AEGIKVTDA	9	Unmodified	_AEGIKVTDA_					0	0	0		CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant;ENSG00000168564|ENST00000504169|CDKN2AIP	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	903.4786987304688	1	903.478188	902.470912	0.79591	0.00071909	0.091048	8.226E-05	0.88696	0.00080135	903.4778309560222	26.95	0.26053	26.781	26.599	26.859	-0.16933					7	4	2	0	0	0	0.0158	1	9702	9702		100.71	28.786	1	3862200			1095	395	580	584	1111	1111					0.015774882809068913
AEGIKVTDA	9	Unmodified	_AEGIKVTDA_					0	0	0		CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant;ENSG00000168564|ENST00000504169|CDKN2AIP	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	452.2427062988281	2	452.242732	902.470912	0.3743	0.00016928	-0.27271	-0.00012333	0.10159	4.5944E-05	452.2425190454588	27.129	0.31188	26.818	26.639	26.95	-0.3114					13	5	3	0	0	0	0.0081783	1	9690	9690		117.84	51.381	1	17476000			1096	395	580	584	1112	1112					0.015774882809068913
AEGIKVTDA	9	Unmodified	_AEGIKVTDA_					0	0	0		CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant;ENSG00000168564|ENST00000504169|CDKN2AIP	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	CDKN2AIP|p.T161Pfs*19|1|0.4|ENSG00000168564|chr4:183446161-183446161|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	903.4790649414062	1	903.478188	902.470912	0.7521	0.00067951	0.58868	0.00053186	1.3408	0.0012114	903.4786400456134	27.132	0.20808	26.821	26.69	26.899	-0.3114					5	3	2	0	0	0	0.043159	1	9712	9712		78.06	15.488	1	2126300			1097	395	580	584	1113	1113					0.015774882809068913
AEGIRRRRWWR	11	Unmodified	_AEGIRRRRWWR_					0	0	0			REV__ENST00000510882.3_1_6:22569875-22570217:+|nuORF	REV__ENST00000510882.3_1_6:22569875-22570217:+|nuORF	MSMS	HCT116MG_D190212_S2	2	514.626220703125	3	514.62727	1540.85998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.941	1	35.813	35.313	36.313	-0.12799								0	0	0	0.96014	1	13424	13424		1.0136	0.55906	1		+		1098	16180	581	585	1114	1114					0.1111847308520737
AEGKGFIA	8	Unmodified	_AEGKGFIA_					0	0	0		nc|ENSG00000130038|Q9BSW2-1|CRACR2A;ENSG00000130038|ENST00000440314|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-MSMS	HCT116MG_D190212_S2	2	396.7159423828125	2	396.716153	791.417754	-0.093668	-3.716E-05	-0.44821	-0.00017781	-0.54188	-0.00021497	396.71607215577075	30.84	0.36298	30.573	30.353	30.716	-0.26704					11	6	2	0	0	0	0.557	1	11365	11365		36.127	5.4905	1	24667000			1099	3054	582	586	1115	1115					0.013701552888960578
AEGKGFIA	8	Unmodified	_AEGKGFIA_					0	0	0		nc|ENSG00000130038|Q9BSW2-1|CRACR2A;ENSG00000130038|ENST00000440314|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-MSMS	HCT116MG_D190212_S2	2	792.4256591796875	1	792.42503	791.417754	0.7919	0.00062752	-0.24472	-0.00019392	0.54718	0.0004336	792.4247496592761	30.853	0.20713	30.586	30.456	30.663	-0.26704					5	3	2	0	0	0	0.29007	1	11379	11379		60.074	20.117	1	13104000			1100	3054	582	586	1116	1116					0.013701552888960578
AEGKGFIA	8	Unmodified	_AEGKGFIA_					0	0	0		nc|ENSG00000130038|Q9BSW2-1|CRACR2A;ENSG00000130038|ENST00000440314|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-MSMS	HCT116MG_D190212_S3	3	396.7159729003906	2	396.716153	791.417754	-0.11848	-4.7004E-05	-0.068785	-2.7288E-05	-0.18727	-7.4292E-05	396.71607280050085	30.881	0.4172	30.62	30.5	30.917	-0.26071					10	7	2	0	0	0	0.40176	1	11271	11271		49.933	11.959	1	8106100			1101	3054	582	586	1117	1117					0.013701552888960578
AEGKHQAF	8	Unmodified	_AEGKHQAF_					0	0	0		OR10A4|p.P230S|1|0.15|ENSG00000170782|chr11:6877335-6877335|C/T|missense_variant;ENSG00000170782|ENST00000379829|OR10A4	OR10A4|p.P230S|1|0.15|ENSG00000170782|chr11:6877335-6877335|C/T|missense_variant	OR10A4|p.P230S|1|0.15|ENSG00000170782|chr11:6877335-6877335|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	444.2215881347656	2	444.222134	886.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.304	1	30.019	29.519	30.519	-0.28453								0	0	0	0.55681	1	11135	11135		39.957	11.47	1				1102	5154	583	587	1118	1118					-0.018042279679093554
AEGKISETTA	10	Unmodified	_AEGKISETTA_					0	0	0		ENST00000466134.5_1_21:45719988-45734072:+|nuORF;PFKL|p.P704Qfs*6|1|0.29|ENSG00000141959|chr21:44326177-44326177|C/-|frameshift_variant;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000466134.5_1_21:45719988-45734072:+|nuORF	ENST00000466134.5_1_21:45719988-45734072:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	504.2496643066406	2	503.756204	1005.49785	0.25782	0.00012988	-0.0036444	-1.8359E-06	0.25418	0.00012804	503.7560494240902	19.29	0.31204	19.103	18.973	19.285	-0.18674					7	5	2	0	0	0	0.24834	1	6539	6539		45.74	15.103	1	1741400			1103	3739	584	588	1119	1119					-0.004674478985748465
AEGKISETTA	10	Unmodified	_AEGKISETTA_					0	0	0		ENST00000466134.5_1_21:45719988-45734072:+|nuORF;PFKL|p.P704Qfs*6|1|0.29|ENSG00000141959|chr21:44326177-44326177|C/-|frameshift_variant;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000466134.5_1_21:45719988-45734072:+|nuORF	ENST00000466134.5_1_21:45719988-45734072:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	503.756204	1005.49785	0.33861	0.00017058	0.40906	0.00020607	0.74767	0.00037664	503.756394245648	18.988	0.20818	19.057	18.927	19.135	0.069159	-0.023019	1.2983E-05	NaN	45.74	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7243700			1104	3739	584	588							-0.004674478985748465
AEGKLLFPE	9	Unmodified	_AEGKLLFPE_					0	0	0		nc|ENSG00000122952|O95229-2|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	MSMS	HCT116MG_D190212_S2	2	502.2745361328125	2	502.276575	1002.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.395	1	16.053	15.553	16.553	-0.34183								0	0	0	0.7663	1	5514	5514		13.906	2.2658	1				1105	9441	585	589	1120	1120					0.03742938211712499
AEGKVRLLA	9	Unmodified	_AEGKVRLLA_					0	0	0		ENSG00000126432|ENST00000265462|PRDX5;nc|ENSG00000126432|P30044-2|PRDX5	ENSG00000126432|ENST00000265462|PRDX5	ENSG00000126432|ENST00000265462|PRDX5	MSMS	HCT116MG_D190212_S2	2	478.79840087890625	2	478.798009	955.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.25	1	30.983	30.483	31.483	-0.26704								0	0	0	0.76739	1	11521	11521		10.074	1.4806	1				1106	2934	586	590	1121	1121					0.10189753059796658
AEGKYMAEA	9	Unmodified	_AEGKYMAEA_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70;ENST00000492171.1_1_3:100096542-100100595:-|nuORF	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	HCT116MG_D190212_S3	3	485.2210693359375	2	485.220943	968.427332	0.057366	2.7835E-05	0.023592	1.1447E-05	0.080958	3.9283E-05	485.2209412714301	24.295	0.25989	24.233	24.051	24.311	-0.061449					8	4	2	0	0	0	0.051033	1	8624	8624		74.2	26.451	1	8951400			1107	4211	587	591	1122	1122					-0.058144444878848844
AEGLADARAAL	11	Unmodified	_AEGLADARAAL_					0	0	0		ENST00000465695.1_1_10:75532330-75533574:+|nuORF;ENST00000394790.2_1_10:75532144-75533060:+|nuORF;FUT11|p.R107Pfs*169|1|0.38|ENSG00000196968|chr10:73772649-73772650|-/C|frameshift_variant;FUT11|p.E35Gfs*241|1|0.17|ENSG00000196968|chr10:73772432-73772433|-/G|frameshift_variant	ENST00000465695.1_1_10:75532330-75533574:+|nuORF	ENST00000465695.1_1_10:75532330-75533574:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2864990234375	2	529.285463	1056.55637	0.64071	0.00033912	0.66946	0.00035434	1.3102	0.00069345	529.285990086101	33.035	0.33475	32.75	32.508	32.843	-0.2851					22	16	2	0	0	0	0.44062	1	12117	12117		51.415	14.341	1	30333000			1108	8096	588	592	1123	1123					0.030356534665543222
AEGLADARAAL	11	Unmodified	_AEGLADARAAL_					0	0	0		ENST00000465695.1_1_10:75532330-75533574:+|nuORF;ENST00000394790.2_1_10:75532144-75533060:+|nuORF;FUT11|p.R107Pfs*169|1|0.38|ENSG00000196968|chr10:73772649-73772650|-/C|frameshift_variant;FUT11|p.E35Gfs*241|1|0.17|ENSG00000196968|chr10:73772432-73772433|-/G|frameshift_variant	ENST00000465695.1_1_10:75532330-75533574:+|nuORF	ENST00000465695.1_1_10:75532330-75533574:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	529.2859497070312	2	529.285463	1056.55637	0.65506	0.00034671	0.74324	0.00039339	1.3983	0.0007401	529.2858833888237	33.207	0.163	32.824	32.726	32.889	-0.38223					31	21	2	0	0	0	0.59037	1	12083	12083		36.506	3.0613	1	25811000			1109	8096	588	592	1124	1124					0.030356534665543222
AEGLADARAAL	11	Unmodified	_AEGLADARAAL_					0	0	0		ENST00000465695.1_1_10:75532330-75533574:+|nuORF;ENST00000394790.2_1_10:75532144-75533060:+|nuORF;FUT11|p.R107Pfs*169|1|0.38|ENSG00000196968|chr10:73772649-73772650|-/C|frameshift_variant;FUT11|p.E35Gfs*241|1|0.17|ENSG00000196968|chr10:73772432-73772433|-/G|frameshift_variant	ENST00000465695.1_1_10:75532330-75533574:+|nuORF	ENST00000465695.1_1_10:75532330-75533574:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	529.285463	1056.55637	0.33405	0.00017681	0.16738	8.859E-05	0.50142	0.0002654	529.2853815723381	32.665	0.20872	32.665	32.482	32.691	0	-0.081396	-0.00050719	NaN	51.415	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5852100			1110	8096	588	592							0.030356534665543222
AEGLMKVEA	9	Unmodified	_AEGLMKVEA_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	HCT116MG_D190212_S1	1	474.2470703125	2	474.24696	946.479368	0.31324	0.00014855	0.65894	0.0003125	0.97218	0.00046105	474.2472534713056	34.987	0.25992	34.987	34.804	35.064	0					7	4	2	0	0	0	0.057703	1	13005	13005		70.929	5.6936	1	32408000			1111	4338	589	593	1125	1125					0.003987189258737089
AEGLMKVEA	9	Unmodified	_AEGLMKVEA_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	HCT116MG_D190212_S2	2	474.24713134765625	2	474.24696	946.479368	0.29418	0.00013952	0.20833	9.8798E-05	0.50251	0.00023831	474.2469791115089	35.048	0.3626	34.889	34.709	35.072	-0.15834					21	6	5	0	0	0	0.057703	1	13062	13062		70.929	14.752	1	240790000			1112	4338	589	593	1126	1126					0.003987189258737089
AEGLMKVEA	9	Oxidation (M)	_AEGLM(Oxidation (M))KVEA_		AEGLM(1)KVEA		AEGLM(57)KVEA	0	0	1		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MSMS	HCT116MG_D190212_S2	2	482.2445373535156	2	482.244418	962.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.474	1	26.112	25.612	26.612	-0.36164								0	0	0	0.096252	1	9579	9579		57.108	13.249	1				1113	4338	589	594	1127	1127		95			-0.00845584936735122
AEGLMKVEA	9	Oxidation (M)	_AEGLM(Oxidation (M))KVEA_		AEGLM(1)KVEA		AEGLM(50)KVEA	0	0	1		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MSMS	HCT116MG_D190212_S3	3	482.2442932128906	2	482.244418	962.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.26	1	26.111	25.611	26.611	-0.14924								0	0	0	0.16718	1	9413	9413		49.742	11.566	1				1114	4338	589	594	1128	1128		95			-0.00845584936735122
AEGLSHTP	8	Unmodified	_AEGLSHTP_					0	0	0		ENST00000358912.4_1_2:64322214-64322343:-|nuORF;ENSG00000197329|ENST00000358912|PELI1	ENST00000358912.4_1_2:64322214-64322343:-|nuORF	ENST00000358912.4_1_2:64322214-64322343:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	406.2007141113281	2	406.200867	810.387182	-0.054316	-2.2063E-05	0.17707	7.1926E-05	0.12275	4.9863E-05	406.2008647117067	22.203	0.26032	21.818	21.635	21.895	-0.3852					8	4	2	0	0	0	0.067369	1	7860	7860		104.8	3.0772	1	16844000			1115	6137	590	595	1129	1129					-0.025596230961355104
AEGLSTLQSP	10	Unmodified	_AEGLSTLQSP_					0	0	0		LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant;ENSG00000275183|ENST00000611161|LENG9;nc|ENSG00000275183|Q96B70|LENG9	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	501.75927734375	2	501.758746	1001.50294	0.38823	0.0001948	-0.019642	-9.8555E-06	0.36859	0.00018494	501.7586523731399	22.407	0.36495	22.398	22.188	22.552	-0.0097122					13	6	3	0	0	0	0.11091	1	7844	7844		71.922	19.654	1	4489200			1116	6677	591	596	1130	1130					0.0022485596406340846
AEGLSTLQSP	10	Unmodified	_AEGLSTLQSP_					0	0	0		LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant;ENSG00000275183|ENST00000611161|LENG9;nc|ENSG00000275183|Q96B70|LENG9	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	501.7584228515625	2	501.758746	1001.50294	0.25562	0.00012826	0.16377	8.2174E-05	0.41939	0.00021043	501.7586311230966	22.709	0.36547	22.471	22.237	22.603	-0.23758					10	6	2	0	0	0	0.43216	1	7929	7929		39.95	10.868	1	2397600			1117	6677	591	596	1131	1131					0.0022485596406340846
AEGLSTLQSP	10	Unmodified	_AEGLSTLQSP_					0	0	0		LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant;ENSG00000275183|ENST00000611161|LENG9;nc|ENSG00000275183|Q96B70|LENG9	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	LENG9|p.P468Afs*7|1|0.47|ENSG00000275183|chr19:54462125-54462126|-/C|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	501.758746	1001.50294	0.39932	0.00020036	-0.26758	-0.00013426	0.13174	6.6099E-05	501.75859007216104	22.929	0.31204	22.544	22.31	22.622	-0.3852	0.073004	-0.00023569	NaN	71.922	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6564100			1118	6677	591	596							0.0022485596406340846
AEGLTLRQAP	10	Unmodified	_AEGLTLRQAP_					0	0	0			REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	REV__ENST00000416636.2_1_7:23624683-23625604:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	528.8118286132812	2	528.29583	1054.57711	0.086635	4.5769E-05	-0.42634	-0.00022523	-0.3397	-0.00017946	528.2956446257135	18.398	0.20913	18.035	17.904	18.113	-0.36325					8	3	3	0	0	0	0.69918	1	6271	6271		20.454	3.3407	1	5692900	+		1119	15479	592	597	1132	1132					0.052002438462295686
AEGMKEHPE	9	Unmodified	_AEGMKEHPE_					0	0	0			REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	MSMS	HCT116MG_D190212_S4	4	514.2501220703125	2	514.229299	1026.44404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.898	1	30.534	30.034	31.034	-0.36416								0	0	0	0.56943	1	11192	11192		25.399	3.6527	1		+		1120	15386	593	598	1133	1133					-0.0681194360192876
AEGMSYLEE	9	Unmodified	_AEGMSYLEE_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MSMS	HCT116MG_D190212_S2	2	514.717041015625	2	514.71569	1027.41683	0.37934	0.00019525	1.3414	0.00069042	1.7207	0.00088568	514.7164751896561	23.904	0.52008	23.52	23.351	23.871	-0.38324					13	9	2	0	0	0	0.41514	1	8573	8573		21.747	0	1	10066000			1121	2893	594	599	1134	1134					-0.09578471932968569
AEGMSYLEE	9	Unmodified	_AEGMSYLEE_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	514.71569	1027.41683	0.37934	0.00019525	1.3414	0.00069042	1.7207	0.00088568	514.7164751896561	23.904	0.52008	23.52	23.351	23.871	-0.38324	0.12493	2.3132E-05	NaN	21.747	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10066000			1122	2893	594	599							-0.09578471932968569
AEGMSYLEE	9	Unmodified	_AEGMSYLEE_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	514.71569	1027.41683	0.20073	0.00010332	1.1315	0.00058241	1.3322	0.00068572	514.7162026742132	23.29	0.62533	23.25	23.135	23.76	-0.03968	-0.14517	-0.0001929	NaN	21.747	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5378700			1123	2893	594	599							-0.09578471932968569
AEGMSYLEE	9	Unmodified	_AEGMSYLEE_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	514.71569	1027.41683	0.20971	0.00010794	1.553	0.00079934	1.7627	0.00090728	514.716432796255	23.663	0.41602	23.416	23.272	23.688	-0.24775	0.020235	0.00024096	NaN	21.747	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3582100			1124	2893	594	599							-0.09578471932968569
AEGMVHGA	8	Unmodified	_AEGMVHGA_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB2|p.G1425Vfs*27|1|0.36|ENSG00000172037|chr3:49123003-49123003|C/-|frameshift_variant;LAMB2|p.N487Tfs*10|1|0.07|ENSG00000172037|chr3:49129664-49129664|G/-|frameshift_variant	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	HCT116MG_D190212_S1	1	386.17626953125	2	386.176338	770.338123	0.039045	1.5078E-05	-0.03144	-1.2141E-05	0.0076054	2.937E-06	386.17628403624497	20.629	0.26036	20.629	20.488	20.748	0					6	4	2	0	0	0	0.50777	1	7239	7239		40.449	19.577	1	4843700			1125	5230	595	600	1135	1135					-0.05623234656729892
AEGMVHGA	8	Unmodified	_AEGMVHGA_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB2|p.G1425Vfs*27|1|0.36|ENSG00000172037|chr3:49123003-49123003|C/-|frameshift_variant;LAMB2|p.N487Tfs*10|1|0.07|ENSG00000172037|chr3:49129664-49129664|G/-|frameshift_variant	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	386.1762390136719	2	386.176338	770.338123	-0.055382	-2.1387E-05	0.001638	6.3257E-07	-0.053744	-2.0755E-05	386.1762489600424	21.203	0.3107	20.82	20.651	20.961	-0.38288					8	5	2	0	0	0	0.50777	1	7457	7457		40.449	0	1	25955000			1126	5230	595	600	1136	1136					-0.05623234656729892
AEGMVHGA	8	Unmodified	_AEGMVHGA_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB2|p.G1425Vfs*27|1|0.36|ENSG00000172037|chr3:49123003-49123003|C/-|frameshift_variant;LAMB2|p.N487Tfs*10|1|0.07|ENSG00000172037|chr3:49129664-49129664|G/-|frameshift_variant	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	771.345703125	1	771.3454	770.338123	0.92134	0.00071067	0.068722	5.3008E-05	0.99006	0.00076368	771.3453323585358	21.204	0.25861	20.821	20.703	20.961	-0.38288					6	4	2	0	0	0	0.10511	1	7462	7462		93.883	50.915	1	10350000			1127	5230	595	600	1137	1137					-0.05623234656729892
AEGNEFWSA	9	Unmodified	_AEGNEFWSA_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	HCT116MG_D190212_S1	1	1010.4215698242188	1	1010.4214	1009.41412	0.89602	0.00090535	0.22323	0.00022556	1.1192	0.0011309	1010.4216440854207	47.097	0.20706	47.097	46.958	47.165	0					8	3	3	0	0	0	0.01405	1	17907	17907		103.35	59.495	1	9213000			1128	920	596	601	1138	1138					-0.09020559275620599
AEGNEFWSA	9	Unmodified	_AEGNEFWSA_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	HCT116MG_D190212_S2	2	1010.4226684570312	1	1010.4214	1009.41412	0.87761	0.00088676	0.26146	0.00026418	1.1391	0.0011509	1010.4215884670433	47.121	0.56664	47	46.769	47.336	-0.12175					21	10	3	0	0	0	0.01405	1	17949	17949		103.35	47.176	1	125430000			1129	920	596	601	1139	1139					-0.09020559275620599
AEGNEFWSA	9	Unmodified	_AEGNEFWSA_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	HCT116MG_D190212_S3	3	1010.421875	1	1010.4214	1009.41412	0.50063	0.00050584	0.01067	1.0781E-05	0.5113	0.00051663	1010.4213411178138	47.349	0.45423	47.034	46.853	47.308	-0.31525					23	9	4	0	0	0	0.041798	1	17763	17763		78.728	42.601	1	56670000			1130	920	596	601	1140	1140					-0.09020559275620599
AEGNEFWSA	9	Unmodified	_AEGNEFWSA_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7145080566406	2	505.714339	1009.41412	0.21866	0.00011058	0.24168	0.00012222	0.46034	0.0002328	505.71445682843887	47.35	0.24855	47.035	46.853	47.102	-0.31525					6	4	2	0	0	0	0.077982	1	17785	17785		62.573	30.267	1	11661000			1131	920	596	601	1141	1141					-0.09020559275620599
AEGNEFWSA	9	Unmodified	_AEGNEFWSA_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	HCT116MG_D190212_S4	4	1010.4217529296875	1	1010.4214	1009.41412	0.741	0.00074872	-0.27355	-0.0002764	0.46745	0.00047232	1010.4212559036539	47.4	0.34007	47.03	46.848	47.188	-0.37038					22	15	2	0	0	0	0.01405	1	17522	17522		103.35	47.176	1	15693000			1132	920	596	601	1142	1142					-0.09020559275620599
AEGPEVICA	9	Unmodified	_AEGPEVICA_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	HCT116MG_D190212_S2	2	888.414306640625	1	888.413145	887.405868	0.8536	0.00075835	0.25095	0.00022295	1.1046	0.0009813	888.413406666402	39.562	0.30249	39.484	39.328	39.631	-0.077839					9	5	2	0	0	0	0.063511	1	14906	14906		68.081	29.93	1	29964000			1133	878	597	602	1143	1143					-0.04233829516590504
AEGPNYLTA	9	Unmodified	_AEGPNYLTA_					0	0	0		ENSG00000106400|ENST00000305105|ZNHIT1;ENST00000485387.1_1_7:100865814-100867236:+|nuORF;ENST00000492315.5_1_7:100864992-100867236:+|nuORF	ENSG00000106400|ENST00000305105|ZNHIT1	ENSG00000106400|ENST00000305105|ZNHIT1	MULTI-MSMS	HCT116MG_D190212_S2	2	935.4482421875	1	935.446888	934.439611	0.67037	0.0006271	0.18038	0.00016874	0.85075	0.00079584	935.4466843791934	36.948	0.30934	36.833	36.653	36.963	-0.11478					10	5	3	0	0	0	0.02327	1	13836	13836		93.166	25.822	1	39937000			1134	2076	598	603	1144	1144					-0.030230847531925065
AEGPNYLTA	9	Unmodified	_AEGPNYLTA_					0	0	0		ENSG00000106400|ENST00000305105|ZNHIT1;ENST00000485387.1_1_7:100865814-100867236:+|nuORF;ENST00000492315.5_1_7:100864992-100867236:+|nuORF	ENSG00000106400|ENST00000305105|ZNHIT1	ENSG00000106400|ENST00000305105|ZNHIT1	MULTI-MSMS	HCT116MG_D190212_S3	3	935.447021484375	1	935.446888	934.439611	0.73636	0.00068883	0.29076	0.00027199	1.0271	0.00096082	935.4468057076184	37.148	0.31239	36.847	36.665	36.977	-0.30137					12	5	3	0	0	0	0.026999	1	13753	13753		89.401	31.929	1	13263000			1135	2076	598	603	1145	1145					-0.030230847531925065
AEGPPAMLP	9	Unmodified	_AEGPPAMLP_					0	0	0		ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;MAN2A2|p.V832Rfs*6|1|0.43|ENSG00000196547|chr15:90912894-90912895|-/C|frameshift_variant;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	882.4395141601562	1	882.438966	881.431689	0.82275	0.00072603	0.3303	0.00029147	1.1531	0.0010175	882.4390984446727	45.87	0.61528	45.769	45.505	46.12	-0.1014					18	11	2	0	0	0	0.050578	1	17451	17451		74.423	0.026461	1	30513000			1136	6082	599	604	1146	1146					-0.013769352743111085
AEGPPTNPP	9	Unmodified	_AEGPPTNPP_					0	0	0		ENSG00000161847|ENST00000617231|RAVER1	ENSG00000161847|ENST00000617231|RAVER1	ENSG00000161847|ENST00000617231|RAVER1	MULTI-MSMS	HCT116MG_D190212_S3	3	879.4210815429688	1	879.420673	878.413397	0.76931	0.00067655	-0.35415	-0.00031145	0.41516	0.0003651	879.4209223705436	24.659	1.041	24.575	23.82	24.861	-0.083694					26	19	2	0	0	0	0.053544	1	8608	8608		72.968	8.7316	1	2613300			1137	4499	600	605	1147	1147					-0.03067353924677718
AEGPVAVVV	9	Unmodified	_AEGPVAVVV_					0	0	0		ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	840.4832763671875	1	840.482545	839.475269	0.69988	0.00058824	0.1976	0.00016608	0.89748	0.00075432	840.4825283035609	44.592	0.4209	44.592	44.304	44.724	0					14	7	3	0	0	0	0.1037	1	16878	16878		57.471	3.8958	1	32538000			1138	18734	601	606	1148	1148					0.04910997494482672
AEGPVAVVV	9	Unmodified	_AEGPVAVVV_					0	0	0		ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	840.482177734375	1	840.482545	839.475269	0.99281	0.00083444	-0.1025	-8.6151E-05	0.89031	0.00074829	840.4823328901567	44.702	0.67999	44.617	44.376	45.056	-0.084797					23	12	3	0	0	0	0.050578	1	16958	16958		74.423	10.86	1	187830000			1139	18734	601	606	1149	1149					0.04910997494482672
AEGPVAVVV	9	Unmodified	_AEGPVAVVV_					0	0	0		ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	840.4828491210938	1	840.482545	839.475269	0.73463	0.00061744	0.011861	9.9689E-06	0.74649	0.00062741	840.4823245598479	44.998	0.30672	44.625	44.473	44.779	-0.37325					19	9	3	0	0	0	0.065014	1	16565	16565		67.344	3.781	1	14342000			1140	18734	601	606	1150	1150					0.04910997494482672
AEGPVAVVV	9	Unmodified	_AEGPVAVVV_					0	0	0		ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	840.482545	839.475269	0.92539	0.00077778	-0.14836	-0.00012469	0.77704	0.00065309	840.4821886989846	44.908	0.54663	44.598	44.394	44.941	-0.30927	-0.0096599	-7.6129E-05	NaN	74.423	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46746000			1141	18734	601	606							0.04910997494482672
AEGQEVFVP	9	Unmodified	_AEGQEVFVP_					0	0	0		nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1;ISYNA1|p.S124G|1|0.43|ENSG00000105655|chr19:18437018-18437018|T/C|missense_variant;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	nc|ENSG00000105655|Q9NPH2-3|ISYNA1	nc|ENSG00000105655|Q9NPH2-3|ISYNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	975.478759765625	1	975.478188	974.470912	0.83192	0.00081152	0.65673	0.00064062	1.4886	0.0014521	975.4788358812933	44.905	0.52105	44.82	44.639	45.161	-0.084797					18	9	3	0	0	0	0.041798	1	17066	17066		78.728	9.6231	1	58554000			1142	2021	602	607	1151	1151					-0.01734511719087095
AEGQEVFVP	9	Unmodified	_AEGQEVFVP_					0	0	0		nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1;ISYNA1|p.S124G|1|0.43|ENSG00000105655|chr19:18437018-18437018|T/C|missense_variant;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	nc|ENSG00000105655|Q9NPH2-3|ISYNA1	nc|ENSG00000105655|Q9NPH2-3|ISYNA1	MULTI-SECPEP	HCT116MG_D190212_S2	2	487.7908630371094	2	488.242732	974.470912	0.39836	0.0001945	0.36949	0.0001804	0.76785	0.0003749	488.24300552985346	44.957	0.31255	44.865	44.683	44.996	-0.092472					9	5	2	0	0	0	0.22011	1	17094	17094		21.537	0	1	11193000			1143	2021	602	607	1152	1152					-0.01734511719087095
AEGQEVFVP	9	Unmodified	_AEGQEVFVP_					0	0	0		nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1;ISYNA1|p.S124G|1|0.43|ENSG00000105655|chr19:18437018-18437018|T/C|missense_variant;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	nc|ENSG00000105655|Q9NPH2-3|ISYNA1	nc|ENSG00000105655|Q9NPH2-3|ISYNA1	MULTI-MSMS	HCT116MG_D190212_S3	3	975.4805297851562	1	975.478188	974.470912	0.65616	0.00064007	0.61131	0.00059632	1.2675	0.0012364	975.4790108379392	45.172	0.41722	44.863	44.68	45.098	-0.30927					14	7	3	0	0	0	0.016701	1	16901	16901		99.799	30.694	1	10547000			1144	2021	602	607	1153	1153					-0.01734511719087095
AEGQLEAA	8	Unmodified	_AEGQLEAA_					0	0	0			REV__ENSG00000146054|ENST00000274773|TRIM7	REV__ENSG00000146054|ENST00000274773|TRIM7	MULTI-MSMS	HCT116MG_D190212_S2	2	788.3795776367188	1	788.378474	787.371197	0.96333	0.00075947	0.10634	8.3839E-05	1.0697	0.00084331	788.3788572107717	23.747	0.26031	23.364	23.247	23.508	-0.38324					6	4	2	0	0	0	0.27593	1	8521	8521		61.357	0	1	5298200	+		1145	12470	603	608	1154	1154					-0.03099329333042533
AEGQRLFSA	9	Unmodified	_AEGQRLFSA_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MSMS	HCT116MG_D190212_S1	1	489.7539978027344	2	489.753798	977.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.628	1	35.628	35.128	36.128	0								0	0	0	0.38693	1	13259	13259		34.222	1.436	1				1146	3702	604	609	1155	1155					0.0033971274932582674
AEGQRLFSA	9	Unmodified	_AEGQRLFSA_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	HCT116MG_D190212_S2	2	489.75390625	2	489.753798	977.493044	0.32625	0.00015978	0.78718	0.00038553	1.1134	0.00054531	489.7537833392136	35.658	0.30822	35.515	35.335	35.643	-0.14245					8	5	2	0	0	0	0.048237	1	13319	13319		75.571	27.822	1	42377000			1147	3702	604	609	1156	1156					0.0033971274932582674
AEGQRLFSA	9	Unmodified	_AEGQRLFSA_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	HCT116MG_D190212_S3	3	490.2220153808594	2	489.753798	977.493044	0.22876	0.00011204	0.050206	2.4589E-05	0.27897	0.00013662	489.75381936419734	35.831	0.17663	35.53	35.449	35.626	-0.30042					5	3	2	0	0	0	0.26707	1	13200	13200		34.222	1.436	1	3667200			1148	3702	604	609	1157	1157					0.0033971274932582674
AEGRIIWPA	9	Unmodified	_AEGRIIWPA_					0	0	0		ENST00000457895.6_2_19:19516611-19516803:+|nuORF	ENST00000457895.6_2_19:19516611-19516803:+|nuORF	ENST00000457895.6_2_19:19516611-19516803:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	506.78216552734375	2	506.782359	1011.55016	0.36927	0.00018714	-0.45458	-0.00023037	-0.085312	-4.3235E-05	506.7821528881927	45.567	0.46278	45.474	45.256	45.719	-0.092472					18	8	3	0	0	0	0.071914	1	17360	17360		63.961	31.655	1	52704000			1149	8034	605	610	1158	1158					0.04485180025699265
AEGRIIWPA	9	Unmodified	_AEGRIIWPA_					0	0	0		ENST00000457895.6_2_19:19516611-19516803:+|nuORF	ENST00000457895.6_2_19:19516611-19516803:+|nuORF	ENST00000457895.6_2_19:19516611-19516803:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	507.28424072265625	2	506.782359	1011.55016	0.42986	0.00021785	-0.15432	-7.8206E-05	0.27554	0.00013964	506.7821645434813	45.901	0.39535	45.59	45.357	45.752	-0.31094					12	7	2	0	0	0	0.11363	1	17173	17173		55.503	30.103	1	22490000			1150	8034	605	610	1159	1159					0.04485180025699265
AEGRIIWPA	9	Unmodified	_AEGRIIWPA_					0	0	0		ENST00000457895.6_2_19:19516611-19516803:+|nuORF	ENST00000457895.6_2_19:19516611-19516803:+|nuORF	ENST00000457895.6_2_19:19516611-19516803:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	506.78240966796875	2	506.782359	1011.55016	0.26757	0.0001356	-0.19858	-0.00010063	0.068999	3.4967E-05	506.7823982800564	45.981	0.27716	45.609	45.398	45.675	-0.37206					7	5	2	0	0	0	0.05892	1	16975	16975		70.332	39.695	1	7187700			1151	8034	605	610	1160	1160					0.04485180025699265
AEGRLKQSL	9	Unmodified	_AEGRLKQSL_					0	0	0		ENST00000378406.5_2_9:35660722-35661181:+|nuORF;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107	ENST00000378406.5_2_9:35660722-35661181:+|nuORF	ENST00000378406.5_2_9:35660722-35661181:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	501.2906799316406	2	501.290548	1000.56654	0.47405	0.00023763	0.0045204	2.2661E-06	0.47857	0.0002399	501.2905130309798	46.785	1.8891	46.471	45.94	47.829	-0.31405					48	37	2	0	0	0	0.68648	1	17496	17496		6.2058	0.44535	1	7005800			1152	4426	606	611	1161	1161					0.06628261191792717
AEGSDDETLA	10	Unmodified	_AEGSDDETLA_					0	0	0			REV__ENSG00000089847|ENST00000318934|ANKRD24	REV__ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	HCT116MG_D190212_S2	2	1007.418212890625	1	1007.41638	1006.4091	0.92765	0.00093453	-0.17133	-0.0001726	0.75632	0.00076193	1007.4174763014964	33.392	0.20483	33.2	33.071	33.276	-0.19297					5	3	2	0	0	0	0.58749	1	12405	12405		29.082	2.1979	1	17494000	+		1153	10977	607	612	1162	1162					-0.09384907928892972
AEGSDDETLA	10	Unmodified	_AEGSDDETLA_					0	0	0			REV__ENSG00000089847|ENST00000318934|ANKRD24	REV__ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1007.41638	1006.4091	0.92765	0.00093453	-0.17133	-0.0001726	0.75632	0.00076193	1007.4174763014964	33.392	0.20483	33.2	33.071	33.276	-0.19297	-0.013365	-0.001134	NaN	29.082	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17494000	+		1154	10977	607	612							-0.09384907928892972
AEGSDDETLA	10	Unmodified	_AEGSDDETLA_					0	0	0			REV__ENSG00000089847|ENST00000318934|ANKRD24	REV__ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1007.41638	1006.4091	0.64263	0.0006474	1.0374	0.0010451	1.68	0.0016925	1007.4172736251433	33.516	0.20749	33.226	33.096	33.304	-0.29013	0.013365	8.3705E-05	NaN	29.082	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3588000	+		1155	10977	607	612							-0.09384907928892972
AEGSEFWSA	9	Unmodified	_AEGSEFWSA_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	983.4114990234375	1	983.410502	982.403226	0.93799	0.00092243	-0.084827	-8.342E-05	0.85316	0.00083901	983.4103582405876	47.179	0.51628	47.057	46.871	47.388	-0.12175					20	9	3	0	0	0	0.042978	1	17990	17990		78.149	34.377	1	84455000			1156	4567	608	613	1163	1163					-0.08867961649900735
AEGSEFWSA	9	Unmodified	_AEGSEFWSA_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	HCT116MG_D190212_S3	3	983.4107666015625	1	983.410502	982.403226	0.68822	0.00067681	0.039021	3.8373E-05	0.72724	0.00071518	983.4104710501897	47.448	0.45385	47.132	46.957	47.411	-0.31525					20	9	3	0	0	0	0.042978	1	17808	17808		78.149	34.377	1	43983000			1157	4567	608	613	1164	1164					-0.08867961649900735
AEGSEFWSA	9	Unmodified	_AEGSEFWSA_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	HCT116MG_D190212_S4	4	983.4105224609375	1	983.410502	982.403226	0.7075	0.00069576	-0.066374	-6.5273E-05	0.64112	0.00063049	983.4105295995486	47.479	0.26588	47.109	47.016	47.282	-0.37038					27	15	2	0	0	0	0.042978	1	17556	17556		78.149	42.022	1	18862000			1158	4567	608	613	1165	1165					-0.08867961649900735
AEGSFLPQL	9	Unmodified	_AEGSFLPQL_					0	0	0			REV__ENST00000219476.7_1_16:2097712-2098647:+|nuORF	REV__ENST00000219476.7_1_16:2097712-2098647:+|nuORF	MSMS	HCT116MG_D190212_S1	1	481.25115966796875	2	481.2531	960.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.382	1	15.382	14.882	15.882	0								0	0	0	0.768	1	5106	5106		7.9102	0.62092	1		+		1159	14517	609	614	1166	1166					0.00982078660570096
AEGSPLNGDQ	10	Unmodified	_AEGSPLNGDQ_					0	0	0			REV__ENST00000563013.1_1_15:75653860-75654411:-|nuORF	REV__ENST00000563013.1_1_15:75653860-75654411:-|nuORF	MSMS	HCT116MG_D190212_S1	1	494.2770080566406	2	494.222528	986.430503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.82	1	33.82	33.32	34.32	0								0	0	0	0.80906	1	12529	12529		27.629	3.6082	1		+		1160	16505	610	615	1167	1167					-0.06325478109511096
AEGSSKIQA	9	Unmodified	_AEGSSKIQA_					0	0	0		EAF1|p.P166Rfs*2|1|0.03|ENSG00000144597|chr3:15434508-15434509|-/G|frameshift_variant;nc|ENSG00000144597|Q96JC9-2|EAF1;ENSG00000144597|ENST00000396842|EAF1	EAF1|p.P166Rfs*2|1|0.03|ENSG00000144597|chr3:15434508-15434509|-/G|frameshift_variant	EAF1|p.P166Rfs*2|1|0.03|ENSG00000144597|chr3:15434508-15434509|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	445.7326354980469	2	445.732532	889.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.462	1	19.092	18.592	19.592	-0.3695								0	0	0	0.43211	1	6749	6749		32.037	9.3012	1				1161	747	611	616	1168	1168					0.0013631762109298506
AEGSTYVP	8	Unmodified	_AEGSTYVP_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S2	2	823.3843994140625	1	823.383225	822.375948	1.0347	0.00085194	-0.3312	-0.0002727	0.70348	0.00057924	823.3830252932731	31.836	0.67344	31.587	31.406	32.08	-0.24883					17	12	2	0	0	0	0.19622	1	11761	11761		74.396	40.209	1	24681000			1162	5152	612	617	1169	1169					-0.042344451902749825
AEGSTYVP	8	Unmodified	_AEGSTYVP_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S3	3	823.3834228515625	1	823.383225	822.375948	0.81247	0.00066897	0.14992	0.00012344	0.96239	0.00079242	823.3831770589518	31.986	0.31184	31.708	31.526	31.838	-0.27841					7	5	2	0	0	0	0.25164	1	11743	11743		63.563	29.376	1	3906900			1163	5152	612	617	1170	1170					-0.042344451902749825
AEGSVAEAA	9	Unmodified	_AEGSVAEAA_					0	0	0			REV__ENST00000607959.5_1_19:35761286-35770156:+|nuORF	REV__ENST00000607959.5_1_19:35761286-35770156:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	804.3751831054688	1	804.373389	803.366112	0.93874	0.0007551	0.66199	0.00053248	1.6007	0.0012876	804.3738027473277	25.269	0.46844	25.162	24.995	25.464	-0.10618					10	8	2	0	0	0	0.050578	1	9008	9008		74.423	7.0789	1	6835200	+		1164	11267	613	618	1171	1171					-0.04343633195662733
AEGSVAEAA	9	Unmodified	_AEGSVAEAA_					0	0	0			REV__ENST00000607959.5_1_19:35761286-35770156:+|nuORF	REV__ENST00000607959.5_1_19:35761286-35770156:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	804.373389	803.366112	0.83174	0.00066903	0.14714	0.00011836	0.97888	0.00078739	804.3734213642086	25.478	0.20933	25.109	24.978	25.187	-0.36914	-0.027084	-9.1744E-05	NaN	74.423	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12503000	+		1165	11267	613	618							-0.04343633195662733
AEGSVAEAA	9	Unmodified	_AEGSVAEAA_					0	0	0			REV__ENST00000607959.5_1_19:35761286-35770156:+|nuORF	REV__ENST00000607959.5_1_19:35761286-35770156:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	804.373389	803.366112	0.93874	0.0007551	0.66199	0.00053248	1.6007	0.0012876	804.3738027473277	25.269	0.46844	25.162	24.995	25.464	-0.10618	0.026696	0.00032238	NaN	74.423	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6835200	+		1166	11267	613	618							-0.04343633195662733
AEGSVAEAA	9	Unmodified	_AEGSVAEAA_					0	0	0			REV__ENST00000607959.5_1_19:35761286-35770156:+|nuORF	REV__ENST00000607959.5_1_19:35761286-35770156:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	804.373389	803.366112	1.055	0.00084864	0.025974	2.0893E-05	1.081	0.00086953	804.3737127535142	25.416	0.26007	25.136	25.006	25.266	-0.27958	0.00038881	-0.00018921	NaN	74.423	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3090700	+		1167	11267	613	618							-0.04343633195662733
AEGTKSYVP	9	Unmodified	_AEGTKSYVP_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;KIF5A|p.A268T|1|0.41|ENSG00000155980|chr12:57569050-57569050|G/A|missense_variant	ENSG00000155980|ENST00000455537|KIF5A	ENSG00000155980|ENST00000455537|KIF5A	MULTI-MSMS	HCT116MG_D190212_S2	2	476.2425231933594	2	476.242732	950.470912	0.25253	0.00012026	0.084099	4.0051E-05	0.33663	0.00016032	476.24219334732675	28.108	0.36271	27.778	27.563	27.926	-0.32987					11	6	2	0	0	0	0.22946	1	10276	10276		38.176	0.20157	1	10719000			1168	4270	614	619	1172	1172					-0.006305117191004683
AEGTKSYVP	9	Unmodified	_AEGTKSYVP_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A;KIF5A|p.A268T|1|0.41|ENSG00000155980|chr12:57569050-57569050|G/A|missense_variant	ENSG00000155980|ENST00000455537|KIF5A	ENSG00000155980|ENST00000455537|KIF5A	MULTI-MSMS	HCT116MG_D190212_S3	3	476.24261474609375	2	476.242732	950.470912	0.16731	7.9679E-05	0.7918	0.00037709	0.95911	0.00045677	476.2425342693778	27.991	0.31257	27.803	27.673	27.985	-0.18847					9	5	2	0	0	0	0.26536	1	10136	10136		34.402	2.2848	1	5749000			1169	4270	614	619	1173	1173					-0.006305117191004683
AEGTNLFL	8	Unmodified	_AEGTNLFL_					0	0	0			REV__PNLIPRP1|p.F343L|1|0.34|ENSG00000187021|chr10:116601167-116601167|C/A|missense_variant	REV__PNLIPRP1|p.F343L|1|0.34|ENSG00000187021|chr10:116601167-116601167|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	432.7266540527344	2	432.726718	863.438883	0.41604	0.00018003	-0.83922	-0.00036315	-0.42318	-0.00018312	432.7263583069476	35.914	0.25735	35.786	35.606	35.864	-0.12799					11	4	3	0	0	0	0.15965	1	13422	13422		81.613	0	1	24737000	+		1170	17428	615	620	1174	1174					0.0017012059777243849
AEGTSPNRIL	10	Unmodified	_AEGTSPNRIL_					0	0	0		ENST00000264657.9_1_17:40500547-40540577:-|nuORF	ENST00000264657.9_1_17:40500547-40540577:-|nuORF	ENST00000264657.9_1_17:40500547-40540577:-|nuORF	MSMS	HCT116MG_D190212_S2	2	529.2854614257812	2	529.285463	1056.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.016	1	23.633	23.133	24.133	-0.38324								0	0	0	0.79191	1	8587	8587		29.841	5.82	1				1171	6896	616	621	1175	1175					0.030356534665770596
AEGVFLVLDP	10	Unmodified	_AEGVFLVLDP_					0	0	0			REV__ENST00000532268.1_1_11:126133989-126134477:-|nuORF	REV__ENST00000532268.1_1_11:126133989-126134477:-|nuORF	MSMS	HCT116MG_D190212_S1	1	530.288330078125	2	530.289682	1058.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.144	1	18.144	17.644	18.644	0								0	0	0	0.87399	1	6219	6219		19.257	4.4187	1		+		1172	13735	617	622	1176	1176					0.037872073831977104
AEGVFLVLDP	10	Unmodified	_AEGVFLVLDP_					0	0	0			REV__ENST00000532268.1_1_11:126133989-126134477:-|nuORF	REV__ENST00000532268.1_1_11:126133989-126134477:-|nuORF	MSMS	HCT116MG_D190212_S1	1	530.2901000976562	2	530.289682	1058.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.192	1	20.192	19.692	20.692	0								0	0	0	0.92607	1	7044	7044		10.074	1.4806	1		+		1173	13735	617	622	1177	1177					0.037872073831977104
AEGVLATRS	9	Unmodified	_AEGVLATRS_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2;ENST00000361832.2_1_10:102045868-102046416:-|nuORF	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MSMS	HCT116MG_D190212_S3	3	452.2485046386719	2	452.248349	902.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.254	1	34.955	34.455	35.455	-0.29922								0	0	0	0.76818	1	13006	13006		7.2892	1.5288	1				1174	6041	618	623	1178	1178					0.0270031037505305
AEGVPVRGA	9	Unmodified	_AEGVPVRGA_					0	0	0		nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B	nc|ENSG00000167645|Q5BJH7-2|YIF1B	nc|ENSG00000167645|Q5BJH7-2|YIF1B	MULTI-MSMS	HCT116MG_D190212_S1	1	428.2374572753906	2	428.237784	854.461016	-0.027252	-1.167E-05	-0.096895	-4.1494E-05	-0.12415	-5.3164E-05	428.23767561210934	23.08	0.26022	23.08	22.949	23.21	0					7	4	2	0	0	0	0.12205	1	8215	8215		53.833	15.859	1	5275300			1175	4943	619	624	1179	1179					0.027963450661900424
AEGVPVRGA	9	Unmodified	_AEGVPVRGA_					0	0	0		nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B	nc|ENSG00000167645|Q5BJH7-2|YIF1B	nc|ENSG00000167645|Q5BJH7-2|YIF1B	MULTI-MSMS	HCT116MG_D190212_S2	2	428.2378845214844	2	428.237784	854.461016	-0.0031815	-1.3624E-06	0.26103	0.00011178	0.25785	0.00011042	428.2378382284062	23.552	0.25978	23.169	23.039	23.299	-0.38324					9	4	3	0	0	0	0.041798	1	8411	8411		78.728	17.371	1	20985000			1176	4943	619	624	1180	1180					0.027963450661900424
AEGVPVRGA	9	Unmodified	_AEGVPVRGA_					0	0	0		nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B	nc|ENSG00000167645|Q5BJH7-2|YIF1B	nc|ENSG00000167645|Q5BJH7-2|YIF1B	MULTI-MSMS	HCT116MG_D190212_S3	3	428.2377624511719	2	428.237784	854.461016	0.056696	2.4279E-05	0.41104	0.00017602	0.46774	0.0002003	428.2377749091355	23.029	0.4165	22.996	22.829	23.245	-0.03363					11	7	2	0	0	0	0.090581	1	8119	8119		60.074	12.325	1	6593800			1177	4943	619	624	1181	1181					0.027963450661900424
AEGVRVLGP	9	Unmodified	_AEGVRVLGP_					0	0	0		ENSG00000102967|ENST00000219240|DHODH	ENSG00000102967|ENST00000219240|DHODH	ENSG00000102967|ENST00000219240|DHODH	MULTI-MSMS	HCT116MG_D190212_S2	2	449.2611083984375	2	449.261259	896.507966	0.12308	5.5295E-05	-0.46135	-0.00020727	-0.33828	-0.00015197	449.26095298825726	34.152	0.36323	33.977	33.76	34.124	-0.17511					15	6	3	0	0	0	0.12421	1	12679	12679		53.404	15.43	1	43304000			1178	1862	620	625	1182	1182					0.05557204617332445
AEGVRVLGP	9	Unmodified	_AEGVRVLGP_					0	0	0		ENSG00000102967|ENST00000219240|DHODH	ENSG00000102967|ENST00000219240|DHODH	ENSG00000102967|ENST00000219240|DHODH	MULTI-MSMS	HCT116MG_D190212_S3	3	449.26116943359375	2	449.261259	896.507966	0.099994	4.4923E-05	-0.40973	-0.00018408	-0.30974	-0.00013915	449.2609556696127	34.248	0.52054	33.954	33.663	34.184	-0.29419					22	9	3	0	0	0	0.12421	1	12581	12581		53.404	5.0582	1	28926000			1179	1862	620	625	1183	1183					0.05557204617332445
AEGVRVLGP	9	Unmodified	_AEGVRVLGP_					0	0	0		ENSG00000102967|ENST00000219240|DHODH	ENSG00000102967|ENST00000219240|DHODH	ENSG00000102967|ENST00000219240|DHODH	MULTI-MSMS	HCT116MG_D190212_S4	4	449.7628479003906	2	449.261259	896.507966	0.26103	0.00011727	-1.3468	-0.00060508	-1.0858	-0.0004878	449.2603956213771	34.395	0.41158	34.009	33.776	34.187	-0.38558					13	7	2	0	0	0	0.082877	1	12560	12560		61.602	13.256	1	17165000			1180	1862	620	625	1184	1184					0.05557204617332445
AEGWETLQD	9	Unmodified	_AEGWETLQD_					0	0	0		ENST00000322764.9_1_7:143087806-143088163:+|nuORF	ENST00000322764.9_1_7:143087806-143088163:+|nuORF	ENST00000322764.9_1_7:143087806-143088163:+|nuORF	MSMS	HCT116MG_D190212_S2	2	350.15643310546875	3	350.157578	1047.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.185	1	10.903	10.403	11.403	-0.28186								0	0	0	0.76915	1	3590	3590		3.8763	0.59502	1				1181	7113	621	626	1185	1185					-0.0709230744969318
AEGWLREEDKY	11	Unmodified	_AEGWLREEDKY_					0	0	0			REV__ENSG00000152049|ENST00000281830|KCNE4	REV__ENSG00000152049|ENST00000281830|KCNE4	MSMS	HCT116MG_D190212_S2	2	466.0420837402344	3	465.889491	1394.64664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.093	1	15.758	15.258	16.258	-0.33451								0	0	0	0.95307	1	5393	5393		4.7159	0.59929	1		+		1182	12619	622	627	1186	1186					-0.034893419956461
AEGYSEEY	8	Unmodified	_AEGYSEEY_					0	0	0			REV__ENST00000554157.5_1_14:20763469-20774096:-|nuORF	REV__ENST00000554157.5_1_14:20763469-20774096:-|nuORF	MSMS	HCT116MG_D190212_S2	2	474.18756103515625	2	474.18508	946.355607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.969	1	26.616	26.116	27.116	-0.35254								0	0	0	0.8837	1	9778	9778		14.582	0	1		+		1183	12126	623	628	1187	1187					-0.11971660640756454
AEHAGVLQA	9	Unmodified	_AEHAGVLQA_					0	0	0		ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	448.234619140625	2	448.235242	894.45593	0.067978	3.047E-05	-0.1378	-6.1765E-05	-0.069818	-3.1295E-05	448.23510911352224	27.412	0.46613	27.412	27.282	27.748	0					15	8	2	0	0	0	0.031089	1	9948	9948		85.272	21.036	1	28142000			1184	6741	624	629	1188	1188					0.004480412035718473
AEHAGVLQA	9	Unmodified	_AEHAGVLQA_					0	0	0		ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	448.2353210449219	2	448.235242	894.45593	0.15203	6.8146E-05	-0.16102	-7.2174E-05	-0.0089861	-4.0279E-06	448.2351868939392	27.872	0.4112	27.53	27.347	27.758	-0.34201					26	7	5	0	0	0	0.023938	1	10142	10142		92.491	10.878	1	189770000			1185	6741	624	629	1189	1189					0.004480412035718473
AEHAGVLQA	9	Unmodified	_AEHAGVLQA_					0	0	0		ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	448.23529052734375	2	448.235242	894.45593	0.26441	0.00011852	0.010149	4.5492E-06	0.27456	0.00012307	448.2351699274589	27.679	0.51975	27.491	27.309	27.829	-0.18847					20	9	3	0	0	0	0.023938	1	9969	9969		92.491	10.878	1	79454000			1186	6741	624	629	1190	1190					0.004480412035718473
AEHAGVLQA	9	Unmodified	_AEHAGVLQA_					0	0	0		ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	895.4638671875	1	895.463207	894.45593	1.1906	0.0010662	-0.48494	-0.00043424	0.70569	0.00063192	895.4627530031016	27.661	0.25986	27.473	27.309	27.569	-0.18847					7	4	2	0	0	0	0.0094709	1	9991	9991		114.65	29.377	1	7531000			1187	6741	624	629	1191	1191					0.004480412035718473
AEHAGVLQA	9	Unmodified	_AEHAGVLQA_					0	0	0		ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	448.2354431152344	2	448.235242	894.45593	0.31323	0.0001404	-0.28791	-0.00012905	0.025314	1.1347E-05	448.23506207527294	27.901	0.31164	27.58	27.45	27.762	-0.32157					13	5	3	0	0	0	0.11023	1	10013	10013		56.177	10.156	1	22237000			1188	6741	624	629	1192	1192					0.004480412035718473
AEHAGVLQA	9	Unmodified	_AEHAGVLQA_					0	0	0		ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	ENST00000216446.8_1_14:67864469-67878840:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		1	895.463207	894.45593	0.71805	0.00064298	-0.052572	-4.7076E-05	0.66548	0.00059591	895.4627721143717	27.935	0.20767	27.614	27.45	27.658	-0.32157	0.070457	0.00034073	NaN	114.65	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2112500			1189	6741	624	629							0.004480412035718473
AEHDDQED	8	Unmodified	_AEHDDQED_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	HCT116MG_D190212_S3	3	479.672607421875	2	479.672868	957.331183	-0.077055	-3.6961E-05	-0.39785	-0.00019084	-0.4749	-0.0002278	479.6726023505178	17.36	0.72844	17.441	17.221	17.95	0.081358					20	13	2	0	0	0	0.82475	1	5840	5840		8.5933	8.5933	1	3724700			1190	2674	625	630	1193	1193					-0.14918920794275436
AEHDLWHII	9	Unmodified	_AEHDLWHII_					0	0	0		CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant;nc|ENSG00000155111|Q9BWU1-2|CDK19;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8;ENSG00000155111|ENST00000368911|CDK19	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	567.2907104492188	2	567.290548	1132.56654	0.46544	0.00026404	0.064249	3.6448E-05	0.52969	0.00030049	567.2905912357483	53.505	0.206	53.505	53.359	53.565	0					5	3	2	0	0	0	0.007119	1	20509	20509		120.45	92.822	1	32877000			1191	393	626	631	1194	1194					0.005562611918094262
AEHDLWHII	9	Unmodified	_AEHDLWHII_					0	0	0		CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant;nc|ENSG00000155111|Q9BWU1-2|CDK19;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8;ENSG00000155111|ENST00000368911|CDK19	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	567.290771484375	2	567.290548	1132.56654	0.32034	0.00018173	0.21255	0.00012058	0.5329	0.00030231	567.2906080806478	53.748	0.41342	53.558	53.325	53.739	-0.1894					17	7	4	0	0	0	0.004194	1	20680	20680		147.83	147.83	1	200650000			1192	393	626	631	1195	1195					0.005562611918094262
AEHDLWHII	9	Unmodified	_AEHDLWHII_					0	0	0		CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant;nc|ENSG00000155111|Q9BWU1-2|CDK19;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8;ENSG00000155111|ENST00000368911|CDK19	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	378.5294189453125	3	378.529458	1132.56654	-0.27614	-0.00010453	0.17624	6.6711E-05	-0.0999	-3.7815E-05	378.5295150805281	53.748	0.25851	53.558	53.429	53.687	-0.1894					12	4	3	0	0	0	0.010304	1	20683	20683		89.401	67.811	1	83315000			1193	393	626	631	1196	1196					0.005562611918094262
AEHDLWHII	9	Unmodified	_AEHDLWHII_					0	0	0		CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant;nc|ENSG00000155111|Q9BWU1-2|CDK19;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8;ENSG00000155111|ENST00000368911|CDK19	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	567.2906494140625	2	567.290548	1132.56654	0.43354	0.00024594	-0.0645	-3.659E-05	0.36904	0.00020935	567.2902977173134	53.908	0.20741	53.608	53.509	53.716	-0.29946					6	3	2	0	0	0	0.016134	1	20431	20431		100.37	74.972	1	4795300			1194	393	626	631	1197	1197					0.005562611918094262
AEHDLWHII	9	Unmodified	_AEHDLWHII_					0	0	0		CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant;nc|ENSG00000155111|Q9BWU1-2|CDK19;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8;ENSG00000155111|ENST00000368911|CDK19	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		3	378.529458	1132.56654	-0.011806	-4.4689E-06	0.17706	6.7024E-05	0.16526	6.2555E-05	378.52934197861174	53.511	0.15397	53.511	53.411	53.565	0	-0.058699	7.2221E-05	NaN	89.401	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8538000			1195	393	626	631							0.005562611918094262
AEHDLWHII	9	Unmodified	_AEHDLWHII_					0	0	0		CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant;nc|ENSG00000155111|Q9BWU1-2|CDK19;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8;ENSG00000155111|ENST00000368911|CDK19	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	CDK8|p.L359*|1|0.13|ENSG00000132964|chr13:26401309-26401309|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	378.529458	1132.56654	-0.070886	-2.6832E-05	-0.028329	-1.0723E-05	-0.099215	-3.7556E-05	378.5293787822165	53.938	0.20741	53.639	53.509	53.716	-0.29946	0.069602	-0.00016102	NaN	89.401	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3037800			1196	393	626	631							0.005562611918094262
AEHDRIARQWT	11	Unmodified	_AEHDRIARQWT_					0	0	0		ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	MULTI-MSMS	HCT116MG_D190212_S2	2	691.8501586914062	2	691.849824	1381.6851	0.54023	0.00037376	0.6318	0.00043711	1.172	0.00081087	691.8496375759927	25.478	0.26115	25.109	24.926	25.187	-0.36914					6	4	2	0	0	0	0.67125	1	9202	9202		38.559	24.944	1	18689000			1197	5110	627	632	1198	1198					0.009520084294990738
AEHDRIARQWT	11	Unmodified	_AEHDRIARQWT_					0	0	0		ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	MULTI-MSMS	HCT116MG_D190212_S2	2	461.9034729003906	3	461.568975	1381.6851	0.12257	5.6573E-05	-0.0090594	-4.1816E-06	0.11351	5.2391E-05	461.9034276162977	25.478	0.20933	25.109	24.978	25.187	-0.36914					9	3	3	0	0	0	0.5254	1	9204	9204		43.713	32.082	1	16020000			1198	5110	627	632	1199	1199					0.009520084294990738
AEHDRIARQWT	11	Unmodified	_AEHDRIARQWT_					0	0	0		ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	ENSG00000170035|ENST00000410062|UBE2E3	MULTI-MATCH	HCT116MG_D190212_S3	3		3	461.568975	1381.6851	0.49177	0.00022699	0.22987	0.0001061	0.72164	0.00033309	461.5688672086404	25.055	0.15642	24.949	24.839	24.995	-0.10618	-0.079885	0.00024318	NaN	43.713	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3447200			1199	5110	627	632							0.009520084294990738
AEHDSILAEKA	11	Unmodified	_AEHDSILAEKA_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MSMS	HCT116MG_D190212_S2	2	592.3014526367188	2	592.30131	1182.58807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.745	1	27.403	26.903	27.903	-0.34201								0	0	0	0.28826	1	10091	10091		61.09	36.099	1				1200	2386	628	633	1200	1200					0.004076014298789232
AEHENLRTP	9	Unmodified	_AEHENLRTP_					0	0	0		PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant	PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7673950195312	2	533.767437	1065.52032	0.39386	0.00021023	-0.17735	-9.4662E-05	0.21652	0.00011557	533.7674251187009	21.441	0.57112	21.058	20.546	21.117	-0.38288					23	10	3	0	0	0	0.057703	1	7514	7514		70.929	39.66	1	13077000			1201	2896	629	634	1201	1201					-0.009818037102832022
AEHENLRTP	9	Unmodified	_AEHENLRTP_					0	0	0		PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant	PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	355.8769226074219	3	356.180717	1065.52032	-0.21162	-7.5374E-05	0.25649	9.1357E-05	0.044873	1.5983E-05	356.5150982230257	21.4	0.62293	21.017	20.494	21.117	-0.38288					16	11	2	0	0	0	0.18678	1	7543	7543		20.871	0.4566	1	6020200			1202	2896	629	634	1202	1202					-0.009818037102832022
AEHFSIIRA	9	Unmodified	_AEHFSIIRA_					0	0	0		ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	MULTI-MSMS	HCT116MG_D190212_S1	1	522.2855224609375	2	522.285266	1042.55598	0.20488	0.00010701	0.275	0.00014363	0.47989	0.00025064	522.2853088614694	36.86	0.31137	36.86	36.679	36.99	0					12	5	3	0	0	0	0.00086357	1	13754	13754		193.29	111.4	1	137660000			1203	5638	630	635	1203	1203					0.03640278537386621
AEHFSIIRA	9	Unmodified	_AEHFSIIRA_					0	0	0		ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	MULTI-MSMS	HCT116MG_D190212_S2	2	522.2855224609375	2	522.285266	1042.55598	0.36452	0.00019038	-0.0029551	-1.5434E-06	0.36156	0.00018884	522.2852475646204	36.846	0.46397	36.731	36.499	36.963	-0.11478					26	8	5	0	0	0	0.034046	1	13789	13789		82.529	40.69	1	1004699999.9999999			1204	5638	630	635	1204	1204					0.03640278537386621
AEHFSIIRA	9	Unmodified	_AEHFSIIRA_					0	0	0		ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	MULTI-MSMS	HCT116MG_D190212_S2	2	1043.5638427734375	1	1043.56326	1042.55598	0.75961	0.00079271	-0.069433	-7.2458E-05	0.69018	0.00072025	1043.5630361685849	36.846	0.25768	36.731	36.602	36.859	-0.11478					8	4	2	0	0	0	0.0038512	1	13814	13814		152.89	80.964	1	75464000			1205	5638	630	635	1205	1205					0.03640278537386621
AEHFSIIRA	9	Unmodified	_AEHFSIIRA_					0	0	0		ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2853393554688	2	522.285266	1042.55598	0.3313	0.00017303	0.028023	1.4636E-05	0.35932	0.00018767	522.28524189055	37.096	0.46843	36.795	36.613	37.081	-0.30137					25	8	5	0	0	0	4.893E-05	1	13713	13713		208.15	115.65	1	173280000			1206	5638	630	635	1206	1206					0.03640278537386621
AEHFSIIRA	9	Unmodified	_AEHFSIIRA_					0	0	0		ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	MULTI-MSMS	HCT116MG_D190212_S4	4	522.2852783203125	2	522.285266	1042.55598	0.26385	0.0001378	0.016564	8.6511E-06	0.28041	0.00014645	522.285213670783	37.232	0.34283	36.849	36.685	37.028	-0.3839					16	6	4	0	0	0	0.0034469	1	13659	13659		179.17	97.283	1	57827000			1207	5638	630	635	1207	1207					0.03640278537386621
AEHFSIIRA	9	Unmodified	_AEHFSIIRA_					0	0	0		ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1043.56326	1042.55598	0.56542	0.00059006	-0.074871	-7.8133E-05	0.49055	0.00051192	1043.5637459190184	37.076	0.20828	36.775	36.665	36.873	-0.30128	0.021637	-4.786E-06	NaN	152.89	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1929200			1208	5638	630	635							0.03640278537386621
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	531.263916015625	2	531.263476	1060.5124	0.38849	0.00020639	0.33516	0.00017806	0.72365	0.00038445	531.2635709940491	34.727	0.36344	34.727	34.545	34.909	0					13	6	3	0	0	0	0.0035381	1	12895	12895		171.09	125.07	1	47017000			1209	5720	631	636	1208	1208					-0.015436542314091639
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	354.5114440917969	3	354.51141	1060.5124	-0.0037513	-1.3299E-06	0.055561	1.9697E-05	0.05181	1.8367E-05	354.51134598355287	34.727	0.36344	34.727	34.545	34.909	0					13	6	3	0	0	0	0.016744	1	12900	12900		81.915	64.802	1	48296000			1210	5720	631	636	1209	1209					-0.015436542314091639
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	531.2635498046875	2	531.263476	1060.5124	0.60184	0.00031974	-0.31932	-0.00016964	0.28252	0.00015009	531.2633134978231	34.789	0.41488	34.631	34.45	34.865	-0.15834					24	7	5	0	0	0	0.00086357	1	12940	12940		193.29	147.27	1	676120000			1211	5720	631	636	1210	1210					-0.015436542314091639
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	354.5113525390625	3	354.51141	1060.5124	0.019266	6.83E-06	-0.13631	-4.8323E-05	-0.11704	-4.1493E-05	354.5112836899151	34.789	0.36304	34.631	34.45	34.813	-0.15834					18	6	4	0	0	0	0.011082	1	12956	12956		91.085	67.295	1	338610000			1212	5720	631	636	1211	1211					-0.015436542314091639
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1061.5205078125	1	1061.51968	1060.5124	0.73964	0.00078514	-0.71064	-0.00075435	0.029004	3.0788E-05	1061.5189006006478	34.79	0.20756	34.631	34.502	34.709	-0.15834					5	3	2	0	0	0	0.0038512	1	12962	12962		152.89	100.62	1	48865000			1213	5720	631	636	1212	1212					-0.015436542314091639
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	354.5111083984375	3	354.51141	1060.5124	-0.096743	-3.4296E-05	0.085004	3.0135E-05	-0.011739	-4.1616E-06	354.5113466831223	35.023	0.4152	34.726	34.544	34.959	-0.29707					15	7	3	0	0	0	0.0068427	1	12910	12910		101.54	72.106	1	70990000			1214	5720	631	636	1213	1213					-0.015436542314091639
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	531.2636108398438	2	531.263476	1060.5124	0.4733	0.00025145	-0.036546	-1.9415E-05	0.43676	0.00023203	531.263387452352	35.023	0.36312	34.726	34.544	34.907	-0.29707					20	6	4	0	0	0	4.914E-08	1	12915	12915		223.81	169.04	1	142880000			1215	5720	631	636	1214	1214					-0.015436542314091639
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.263671875	2	531.263476	1060.5124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.25	1	34.951	34.451	35.451	-0.29922								0	0	0	0.67173	1	13004	13004		20.454	3.5113	1				1216	5720	631	636	1215	1215					-0.015436542314091639
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	531.2638549804688	2	531.263476	1060.5124	0.49856	0.00026487	0.10569	5.615E-05	0.60425	0.00032102	531.2633749803008	35.161	0.31103	34.775	34.594	34.905	-0.38605					14	5	4	0	0	0	0.00086357	1	12873	12873		193.29	138.52	1	28703000			1217	5720	631	636	1216	1216					-0.015436542314091639
AEHFSMIRA	9	Unmodified	_AEHFSMIRA_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	354.5113220214844	3	354.51141	1060.5124	0.0092043	3.263E-06	-0.23426	-8.3046E-05	-0.22505	-7.9783E-05	354.5112970200429	35.16	0.31113	34.774	34.646	34.957	-0.38606					12	5	3	0	0	0	0.026999	1	12874	12874		73.196	53.834	1	17196000			1218	5720	631	636	1217	1217					-0.015436542314091639
AEHFSMIRA	9	Oxidation (M)	_AEHFSM(Oxidation (M))IRA_		AEHFSM(1)IRA		AEHFSM(81)IRA	0	0	1		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	539.2614135742188	2	539.260933	1076.50731	0.55916	0.00030153	0.14779	7.9698E-05	0.70695	0.00038123	539.260903979307	27.714	0.41242	27.372	27.037	27.449	-0.34201					10	7	2	0	0	0	0.037825	1	10000	10000		80.676	46.274	1	38808000			1219	5720	631	637	1218	1218		125			-0.027879580940407322
AEHFSMIRA	9	Oxidation (M)	_AEHFSM(Oxidation (M))IRA_		AEHFSM(1)IRA		AEHFSM(51)IRA	0	0	1		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	539.2616577148438	2	539.260933	1076.50731	0.54823	0.00029564	0.36567	0.00019719	0.9139	0.00049283	539.261015741355	27.379	0.46825	27.21	26.964	27.432	-0.16933					15	8	2	0	0	0	0.13424	1	9823	9823		51.415	20.779	1	5938200			1220	5720	631	637	1219	1219		125			-0.027879580940407322
AEHFSMIRA	9	Oxidation (M)	_AEHFSM(Oxidation (M))IRA_		AEHFSM(1)IRA		AEHFSM(46)IRA	0	0	1		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	539.2610473632812	2	539.260933	1076.50731	0.49913	0.00026916	0.17663	9.525E-05	0.67576	0.00036441	539.2608690595623	27.495	0.20776	27.174	27.044	27.252	-0.32157					6	3	2	0	0	0	0.16285	1	9852	9852		45.74	15.103	1	3737800			1221	5720	631	637	1220	1220		125			-0.027879580940407322
AEHFSMIRA	9	Oxidation (M)	_AEHFSM(Oxidation (M))IRA_					0	0	1		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B;ENST00000442784.1_1_1:156047142-156051420:-|nuORF;MEX3A|p.P390Rfs*88|1|0.3|ENSG00000254726|chr1:156076968-156076968|G/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;MEX3B|p.G414Vfs*113|1|0.23|ENSG00000183496|chr15:82043629-82043629|C/-|frameshift_variant	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	539.260933	1076.50731	0.4599	0.00024801	0.40802	0.00022003	0.86792	0.00046804	539.2611508711759	27.204	0.15646	27.204	27.125	27.282	0	-0.036301	0.00011805	NaN	80.676	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6827600			1222	5720	631	637				125			-0.027879580940407322
AEHGFWLV	8	Unmodified	_AEHGFWLV_					0	0	0		ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2442626953125	2	479.742702	957.470852	0.28476	0.00013661	-0.30899	-0.00014823	-0.024231	-1.1625E-05	479.742609773253	32.824	0.72598	32.612	32.013	32.739	-0.21135					28	13	3	0	0	0	0.73076	1	12134	12134		19.439	0.18201	1	58402000			1223	8530	632	638	1221	1221					-0.009584669284436131
AEHGIFLPP	9	Unmodified	_AEHGIFLPP_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MULTI-MSMS	HCT116MG_D190212_S1	1	490.7635803222656	2	490.763635	979.512717	0.45151	0.00022158	-0.57876	-0.00028403	-0.12725	-6.2448E-05	490.76357817946433	46.349	0.41299	46.349	46.079	46.492	0					16	7	3	0	0	0	0.14972	1	17598	17598		48.346	14.243	1	15025000			1224	4394	633	639	1222	1222					0.022140887600926362
AEHGIFLPP	9	Unmodified	_AEHGIFLPP_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MULTI-MSMS	HCT116MG_D190212_S1	1	490.76416015625	2	490.763635	979.512717	0.38839	0.00019061	0.23142	0.00011357	0.61981	0.00030418	490.7636132638249	46.66	1.1028	46.66	46.492	47.595	0					29	21	2	0	0	0	0.14972	1	17852	17852		48.346	18.121	1	13184000			1225	4394	633	639	1223	1223					0.022140887600926362
AEHGIFLPP	9	Unmodified	_AEHGIFLPP_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MULTI-MSMS	HCT116MG_D190212_S2	2	490.763916015625	2	490.763635	979.512717	0.4856	0.00023832	-0.012017	-5.8975E-06	0.47358	0.00023242	490.7635582278078	46.546	2.2136	46.435	45.7	47.913	-0.11121					81	42	2	0	0	0	0.065014	4	17759	17521;17759;17991;18222		67.344	19.32	1	109590000			1226	4394	633	639	1224;1225;1226;1227	1225					0.022140887600926362
AEHGIFLPP	9	Unmodified	_AEHGIFLPP_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MULTI-MSMS	HCT116MG_D190212_S2	2	980.5186767578125	1	980.519993	979.512717	0.91897	0.00090107	0.23556	0.00023097	1.1545	0.001132	980.5203739282714	46.505	1.9068	46.394	45.905	47.812	-0.11121					43	36	2	0	0	0	0.031005	2	17665	17665;18112		85.357	27.885	1	19704000			1227	4394	633	639	1228;1229	1228					0.022140887600926362
AEHGIFLPP	9	Unmodified	_AEHGIFLPP_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MSMS	HCT116MG_D190212_S3	3	490.7632751464844	2	490.763635	979.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.871	1	48.555	48.055	49.055	-0.31596								0	0	0	0.18646	1	18391	18391		48.346	16.229	1				1228	4394	633	639	1230	1230					0.022140887600926362
AEHGIFLPP	9	Unmodified	_AEHGIFLPP_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MULTI-MSMS	HCT116MG_D190212_S4	4	490.7635498046875	2	490.763635	979.512717	0.20508	0.00010065	0.22676	0.00011129	0.43184	0.00021193	490.76366551361446	47.198	2.009	46.828	45.975	47.984	-0.37038					95	53	3	0	0	0	0.065014	2	17388	17155;17388		67.344	27.247	1	23096000			1229	4394	633	639	1231;1232	1232					0.022140887600926362
AEHGIFLPP	9	Unmodified	_AEHGIFLPP_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MSMS	HCT116MG_D190212_S4	4	490.7637939453125	2	490.763635	979.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.575	1	47.206	46.706	47.706	-0.36907								0	0	0	0.18646	1	17593	17593		48.346	18.121	1				1230	4394	633	639	1233	1233					0.022140887600926362
AEHGIFLPP	9	Unmodified	_AEHGIFLPP_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MSMS	HCT116MG_D190212_S4	4	490.76385498046875	2	490.763635	979.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.136	1	47.767	47.267	48.267	-0.36856								0	0	0	0.18646	1	17817	17817		48.346	16.229	1				1231	4394	633	639	1234	1234					0.022140887600926362
AEHGIFLPP	9	Unmodified	_AEHGIFLPP_					0	0	0		ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	ENSG00000159079|ENST00000290155|CFAP298	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	490.763635	979.512717	0.14462	7.0974E-05	0.36658	0.00017991	0.5112	0.00025088	490.76369951216566	46.779	2.4493	46.465	45.9	48.349	-0.31405	-0.18582	4.6999E-05	NaN	67.344	147	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59557000			1232	4394	633	639							0.022140887600926362
AEHGLLLGQP	10	Unmodified	_AEHGLLLGQP_					0	0	0		nc|ENSG00000225921|Q9UMY1-2|NOL7;NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	MSMS	HCT116MG_D190212_S1	1	517.7830810546875	2	517.785099	1033.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.874	1	41.874	41.374	42.374	0								0	0	0	0.57811	1	15779	15779		43.772	16.144	1				1233	6486	634	640	1235	1235					0.04020858817534645
AEHGLLLGQP	10	Unmodified	_AEHGLLLGQP_					0	0	0		nc|ENSG00000225921|Q9UMY1-2|NOL7;NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7222900390625	2	517.785099	1033.55564	0.30692	0.00015892	-3.3629	-0.0017413	-3.056	-0.0015824	518.2838573893005	41.975	0.51901	41.906	41.653	42.172	-0.068199					18	9	3	0	0	0	0.31047	1	15796	15796		49.554	5.1473	1	15317000			1234	6486	634	640	1236	1236					0.04020858817534645
AEHGSFRVT	9	Unmodified	_AEHGSFRVT_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-MSMS	HCT116MG_D190212_S2	2	502.25201416015625	2	502.251423	1002.48829	0.68126	0.00034216	-0.30209	-0.00015173	0.37917	0.00019044	502.251236520226	24.086	0.20697	23.704	23.561	23.768	-0.38237					5	3	2	0	0	0	0.028026	1	8636	8636		88.364	29.685	1	7785900			1235	3892	635	641	1237	1237					-0.012851713934196596
AEHGSFRVT	9	Unmodified	_AEHGSFRVT_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MSMS	HCT116MG_D190212_S4	4	502.2520446777344	2	502.251423	1002.48829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.763	1	23.514	23.014	24.014	-0.24974								0	0	0	0.11662	1	8337	8337		53.404	13.454	1				1236	3892	635	641	1238	1238					-0.012851713934196596
AEHGSFRVT	9	Unmodified	_AEHGSFRVT_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	502.251423	1002.48829	0.40481	0.00020332	-0.51195	-0.00025713	-0.10714	-5.381E-05	502.25136376598067	23.357	0.20843	23.317	23.187	23.396	-0.03968	-0.19341	-3.5708E-05	NaN	88.364	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4802900			1237	3892	635	641							-0.012851713934196596
AEHHEAVEA	9	Unmodified	_AEHHEAVEA_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant;SCRIB|p.T966Pfs*9|4|0.48|ENSG00000180900|chr8:143804682-143804682|G/-|frameshift_variant	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	HCT116MG_D190212_S2	2	496.72503662109375	2	496.725238	991.435923	0.36575	0.00018168	0.24492	0.00012166	0.61067	0.00030333	496.7250151663127	16.78	0.20848	16.438	16.308	16.516	-0.34183					7	3	3	0	0	0	0.16144	1	5673	5673		46.021	20.622	1	5898700			1238	5615	636	642	1239	1239					-0.06013754527054971
AEHHQYIA	8	Unmodified	_AEHHQYIA_					0	0	0		DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L	DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant	DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	484.73309326171875	2	484.732866	967.451179	0.36129	0.00017513	0.10403	5.0425E-05	0.46531	0.00022555	484.7326447661538	20.514	0.2086	20.514	20.383	20.592	0					6	3	2	0	0	0	0.37603	1	7187	7187		52.268	25.385	1	4852500			1239	661	637	643	1240	1240					-0.03384842939203736
AEHHQYIA	8	Unmodified	_AEHHQYIA_					0	0	0		DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L	DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant	DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	484.73309326171875	2	484.732866	967.451179	0.11692	5.6674E-05	0.22048	0.00010687	0.3374	0.00016355	484.7328751126918	21.267	0.31037	20.884	20.703	21.013	-0.38288					10	5	3	0	0	0	0.27593	1	7481	7481		61.357	39.611	1	22562000			1240	661	637	643	1241	1241					-0.03384842939203736
AEHHVATL	8	Unmodified	_AEHHVATL_					0	0	0		ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	439.2304992675781	2	439.229959	876.445365	0.04982	2.1882E-05	0.43688	0.00019189	0.4867	0.00021377	439.23005447336027	22.402	0.26098	22.402	22.272	22.533	0					6	4	2	0	0	0	0.3916	1	7970	7970		50.855	16.668	1	1957100			1241	2574	638	644	1242	1242					0.0022005854914368683
AEHHVATL	8	Unmodified	_AEHHVATL_					0	0	0		ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MSMS	HCT116MG_D190212_S2	2	439.229736328125	2	439.229959	876.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.225	1	22.84	22.34	23.34	-0.3852								0	0	0	0.72655	1	8267	8267		28.487	12.64	1				1242	2574	638	644	1243	1243					0.0022005854914368683
AEHKEFITA	9	Unmodified	_AEHKEFITA_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	HCT116MG_D190212_S1	1	523.2695922851562	2	523.269281	1044.52401	0.38647	0.00020223	-0.12398	-6.4876E-05	0.26249	0.00013735	523.2692292788316	27.722	0.25998	27.722	27.592	27.852	0					11	4	3	0	0	0	0.01386	2	10079	10079;10083		103.82	24.227	1	22804000			1243	1061	639	645	1244;1245	1244					0.0035286606357658457
AEHKEFITA	9	Unmodified	_AEHKEFITA_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2695922851562	2	523.269281	1044.52401	0.38352	0.00020068	0.062003	3.2444E-05	0.44552	0.00023313	523.269255847916	28.333	0.31104	28.003	27.822	28.133	-0.32987					18	5	4	0	0	0	0.022505	1	10313	10313		93.938	27.481	1	237580000			1244	1061	639	645	1246	1246					0.0035286606357658457
AEHKEFITA	9	Unmodified	_AEHKEFITA_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	HCT116MG_D190212_S3	3	523.2697143554688	2	523.269281	1044.52401	0.22687	0.00011871	0.090378	4.7292E-05	0.31724	0.000166	523.2693012245799	28.095	0.57367	27.907	27.725	28.298	-0.18847					27	10	4	0	0	0	0.022505	1	10152	10152		93.938	27.481	1	164420000			1245	1061	639	645	1247	1247					0.0035286606357658457
AEHKEFITA	9	Unmodified	_AEHKEFITA_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	HCT116MG_D190212_S4	4	523.2693481445312	2	523.269281	1044.52401	0.31594	0.00016532	0.062567	3.274E-05	0.37851	0.00019806	523.2692707446747	28.369	0.36409	28.038	27.908	28.272	-0.33138					11	6	2	0	0	0	0.01386	1	10200	10200		103.82	28.063	1	74951000			1246	1061	639	645	1248	1248					0.0035286606357658457
AEHKGLHP	8	Unmodified	_AEHKGLHP_					0	0	0			REV__ENST00000457542.6_2_15:42118039-42118483:+|nuORF	REV__ENST00000457542.6_2_15:42118039-42118483:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	444.7378234863281	2	444.737951	887.46135	0.11152	4.9598E-05	-0.082875	-3.6857E-05	0.028648	1.2741E-05	444.73788609114933	18.363	0.36493	18.439	18.205	18.57	0.076334					10	6	2	0	0	0	0.81821	1	6217	6217		9.3474	1.4373	1	3889400	+		1247	15761	640	646	1249	1249					0.013117647860326542
AEHKGLHP	8	Unmodified	_AEHKGLHP_					0	0	0			REV__ENST00000457542.6_2_15:42118039-42118483:+|nuORF	REV__ENST00000457542.6_2_15:42118039-42118483:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	444.737951	887.46135	0.19371	8.6151E-05	-0.17983	-7.9979E-05	0.013879	6.1727E-06	444.7378929379294	18.603	0.46793	18.422	18.147	18.615	-0.18052	-0.0085115	-5.1007E-05	NaN	9.3474	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4149900	+		1248	15761	640	646							0.013117647860326542
AEHKHIEVI	9	Unmodified	_AEHKHIEVI_					0	0	0		ENST00000461880.5_1_6:31852420-31852859:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;EHMT2|p.L855Cfs*36|2|0.23|ENSG00000204371|chr6:31884685-31884685|G/-|frameshift_variant;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	ENST00000461880.5_1_6:31852420-31852859:-|nuORF	ENST00000461880.5_1_6:31852420-31852859:-|nuORF	MSMS	HCT116MG_D190212_S1	1	538.29833984375	2	538.298373	1074.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.548	1	25.548	25.048	26.048	0								0	0	0	0.024942	1	9194	9194		87.258	42.851	1				1249	764	641	647	1250	1250					0.047885477088584594
AEHKHIEVI	9	Unmodified	_AEHKHIEVI_					0	0	0		ENST00000461880.5_1_6:31852420-31852859:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;EHMT2|p.L855Cfs*36|2|0.23|ENSG00000204371|chr6:31884685-31884685|G/-|frameshift_variant;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	ENST00000461880.5_1_6:31852420-31852859:-|nuORF	ENST00000461880.5_1_6:31852420-31852859:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	538.2984619140625	2	538.298373	1074.58219	0.70608	0.00038008	0.076179	4.1007E-05	0.78226	0.00042109	538.2981142928783	26.153	0.25925	25.792	25.662	25.921	-0.36164					8	4	3	0	0	0	0.043159	1	9474	9474		78.06	34.202	1	35428000			1250	764	641	647	1251	1251					0.047885477088584594
AEHKHIEVI	9	Unmodified	_AEHKHIEVI_					0	0	0		ENST00000461880.5_1_6:31852420-31852859:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;EHMT2|p.L855Cfs*36|2|0.23|ENSG00000204371|chr6:31884685-31884685|G/-|frameshift_variant;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	ENST00000461880.5_1_6:31852420-31852859:-|nuORF	ENST00000461880.5_1_6:31852420-31852859:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2991333007812	2	538.298373	1074.58219	0.5655	0.00030441	-0.03619	-1.9481E-05	0.52931	0.00028492	538.2982147816534	25.47	0.25983	25.364	25.204	25.464	-0.10618					7	4	2	0	0	0	0.043159	1	9093	9093		78.06	34.202	1	4279700			1251	764	641	647	1252	1252					0.047885477088584594
AEHLATYGAN	10	Unmodified	_AEHLATYGAN_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MSMS	HCT116MG_D190212_S3	3	523.7494506835938	2	523.748713	1045.48287	0.19318	0.00010118	0.25451	0.0001333	0.44769	0.00023448	523.7490172757998	28.2	0.20898	27.994	27.863	28.072	-0.20593					5	3	2	0	0	0	0.72678	1	10220	10220		18.146	3.3081	1	4411000	+		1252	10917	642	648	1253	1253					-0.038048949759058814
AEHLDLAGA	9	Unmodified	_AEHLDLAGA_					0	0	0		ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	449.2611083984375	2	448.727249	895.439946	0.10536	4.7277E-05	0.48933	0.00021958	0.59469	0.00026685	448.7274215978606	34.117	0.20754	33.941	33.812	34.02	-0.17512					5	3	2	0	0	0	0.073816	1	12679	12679		71.134	22.788	1	12276000			1253	2265	643	649	1254	1254					-0.011956650333445396
AEHLLAQH	8	Unmodified	_AEHLLAQH_					0	0	0		COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant	COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant	COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	459.74310302734375	2	459.743234	917.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.597	1	20.597	20.097	21.097	0								0	0	0	0.29906	1	7207	7207		54.774	0	1				1254	587	644	650	1255	1255					0.009877474404675013
AEHLLAQHSA	10	Unmodified	_AEHLLAQHSA_					0	0	0		COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant	COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant	COPS6|p.I222L|1|0.17|ENSG00000168090|chr7:100091252-100091252|A/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	538.77783203125	2	538.777805	1075.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.658	1	21.273	20.773	21.773	-0.38503								0	0	0	0.45971	1	7634	7634		49.742	0	1				1255	587	645	651	1256	1256					0.006307866693759934
AEHLMLLEA	9	Unmodified	_AEHLMLLEA_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7677612304688	2	513.76806	1025.52157	0.28767	0.0001478	-0.47339	-0.00024321	-0.18572	-9.5417E-05	513.7677797156624	50.411	0.3159	50.239	50.087	50.403	-0.1719					11	5	3	0	0	0	0.063511	1	19318	19318		68.081	22.06	1	43809000			1256	3790	646	652	1257	1257					0.009826943342659433
AEHLMLLEA	9	Unmodified	_AEHLMLLEA_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MSMS	HCT116MG_D190212_S3	3	513.76806640625	2	513.76806	1025.52157	0.14119	7.2541E-05	0.059849	3.0749E-05	0.20104	0.00010329	513.76801590702	50.621	0.26063	50.307	50.177	50.438	-0.31381					7	4	2	0	0	0	0.063511	1	19109	19109		68.081	10.609	1	12568000			1257	3790	646	652	1258	1258					0.009826943342659433
AEHNDKSDE	9	Unmodified	_AEHNDKSDE_					0	0	0			REV__ENSG00000164985|ENST00000380733|PSIP1	REV__ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	522.7156372070312	2	522.715067	1043.41558	0.38125	0.00019929	0.34685	0.00018131	0.72811	0.00038059	522.7153528858845	15.87	0.20823	15.87	15.744	15.952	0					8	3	3	0	0	0	0.35128	1	5306	5306		25.399	14.575	1	10174000	+		1258	13030	647	653	1259	1259					-0.1043896997750835
AEHNDKSDE	9	Unmodified	_AEHNDKSDE_					0	0	0			REV__ENSG00000164985|ENST00000380733|PSIP1	REV__ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	522.7157592773438	2	522.715067	1043.41558	0.28806	0.00015057	0.57474	0.00030043	0.8628	0.000451	522.7154863523019	16.104	0.52237	15.77	15.637	16.159	-0.33451					20	9	4	0	0	0	0.32978	1	5405	5405		27.629	10.516	1	36653000	+		1259	13030	647	653	1260	1260					-0.1043896997750835
AEHNDKSDE	9	Unmodified	_AEHNDKSDE_					0	0	0			REV__ENSG00000164985|ENST00000380733|PSIP1	REV__ENSG00000164985|ENST00000380733|PSIP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	522.715067	1043.41558	0.28806	0.00015057	0.57474	0.00030043	0.8628	0.000451	522.7154863523019	16.104	0.52237	15.77	15.637	16.159	-0.33451	-0.050159	7.9411E-05	NaN	27.629	20	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36653000	+		1260	13030	647	653							-0.1043896997750835
AEHNDLQYA	9	Unmodified	_AEHNDLQYA_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	530.7386474609375	2	530.738345	1059.46214	0.2744	0.00014564	0.22412	0.00011895	0.49852	0.00026459	530.7385163904336	26.944	0.31216	26.944	26.761	27.073	0					10	5	3	0	0	0	0.11023	1	9785	9785		56.177	32.156	1	11020000			1261	769	648	654	1261	1261					-0.06521485355574441
AEHNDLQYA	9	Unmodified	_AEHNDLQYA_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.73876953125	2	530.738345	1059.46214	0.72103	0.00038268	0.14318	7.599E-05	0.86421	0.00045867	530.7383381398644	27.404	0.41407	27.062	26.829	27.243	-0.34201					21	7	4	0	0	0	0.027442	1	9954	9954		88.954	47.114	1	79210000			1262	769	648	654	1262	1262					-0.06521485355574441
AEHNDLQYA	9	Unmodified	_AEHNDLQYA_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	530.7385864257812	2	530.738345	1059.46214	0.50899	0.00027014	0.14747	7.827E-05	0.65646	0.00034841	530.7383391658608	27.26	0.36444	27.091	26.912	27.276	-0.16933					17	6	4	0	0	0	0.027442	1	9801	9801		88.954	58.317	1	31701000			1263	769	648	654	1263	1263					-0.06521485355574441
AEHNDLQYA	9	Unmodified	_AEHNDLQYA_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	530.7389526367188	2	530.738345	1059.46214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.448	1	27.127	26.627	27.627	-0.32157								0	0	0	0.034054	1	9826	9826		78.728	40.754	1				1264	769	648	654	1264	1264					-0.06521485355574441
AEHNDLQYAA	10	Unmodified	_AEHNDLQYAA_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	566.2572631835938	2	566.256902	1130.49925	0.34822	0.00019718	-0.017582	-9.9557E-06	0.33063	0.00018722	566.2568792999011	27.308	0.31236	27.308	27.125	27.438	0					10	5	3	0	0	0	0.051175	1	9904	9904		86.332	38.583	1	23196000			1265	769	649	655	1265	1265					-0.0607781380981578
AEHNDLQYAA	10	Unmodified	_AEHNDLQYAA_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	566.2571411132812	2	566.256902	1130.49925	0.45362	0.00025687	0.10741	6.082E-05	0.56103	0.00031769	566.2568284401082	27.72	0.35946	27.378	27.243	27.602	-0.34201					16	6	3	0	0	0	0.037651	1	10082	10082		96.367	38.645	1	99610000			1266	769	649	655	1266	1266					-0.0607781380981578
AEHNDLQYAA	10	Unmodified	_AEHNDLQYAA_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	566.2571411132812	2	566.256902	1130.49925	0.60166	0.0003407	0.003695	2.0923E-06	0.60536	0.00034279	566.2569359859322	27.627	0.31187	27.439	27.257	27.569	-0.18847					11	5	3	0	0	0	0.10561	1	9971	9971		72.968	34.792	1	18579000			1267	769	649	655	1267	1267					-0.0607781380981578
AEHPDEDP	8	Unmodified	_AEHPDEDP_					0	0	0		nc|ENSG00000114631|Q9NZ53-2|PODXL2;ENSG00000114631|ENST00000342480|PODXL2	nc|ENSG00000114631|Q9NZ53-2|PODXL2	nc|ENSG00000114631|Q9NZ53-2|PODXL2	MSMS	HCT116MG_D190212_S4	4	455.181640625	2	455.182872	908.35119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.556	1	17.386	16.886	17.886	-0.17047								0	0	0	0.77419	1	5832	5832		24.674	4.2203	1				1268	2427	650	656	1268	1268					-0.10665125063655978
AEHPGFMKT	9	Unmodified	_AEHPGFMKT_					0	0	0		nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-6|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-MSMS	HCT116MG_D190212_S1	1	509.24542236328125	2	509.244752	1016.47495	0.50914	0.00025928	0.43417	0.0002211	0.94331	0.00048038	509.2450143684287	26.051	0.41781	26.051	25.77	26.188	0					17	7	3	0	0	0	0.026272	1	9427	9427		90.135	60.294	1	7195700			1269	498	651	657	1269	1269					-0.03262745497022479
AEHPGFMKT	9	Unmodified	_AEHPGFMKT_					0	0	0		nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-6|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.26251220703125	2	509.244752	1016.47495	0.25795	0.00013136	-0.14182	-7.222E-05	0.11613	5.9141E-05	509.24467601941245	26.515	0.36317	26.154	26.024	26.387	-0.36164					15	6	3	0	0	0	0.016591	1	9631	9631		96.936	96.936	1	76007000			1270	498	651	657	1270	1270					-0.03262745497022479
AEHPGFMKT	9	Unmodified	_AEHPGFMKT_					0	0	0		nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-6|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-MSMS	HCT116MG_D190212_S3	3	509.2455749511719	2	509.244752	1016.47495	0.32256	0.00016426	0.74248	0.00037811	1.065	0.00054237	509.2449662766294	26.222	0.57344	26.072	25.786	26.359	-0.14924					18	10	3	0	0	0	0.0060369	1	9378	9378		128.57	84.166	1	40580000			1271	498	651	657	1271	1271					-0.03262745497022479
AEHPGFMKT	9	Oxidation (M)	_AEHPGFM(Oxidation (M))KT_		AEHPGFM(1)KT		AEHPGFM(65)KT	0	0	1		nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-6|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-MSMS	HCT116MG_D190212_S2	2	517.242431640625	2	517.242209	1032.46987	0.25471	0.00013175	-0.55305	-0.00028606	-0.29834	-0.00015431	517.242158287321	19.41	0.52031	19.041	18.68	19.2	-0.3695					17	9	3	0	0	0	0.068828	1	6735	6735		65.474	36.987	1	6005800			1272	498	651	658	1272	1272		8			-0.0450704935963131
AEHPIVIVC	9	Unmodified	_AEHPIVIVC_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	HCT116MG_D190212_S2	2	490.7652893066406	2	490.76532	979.516088	0.13476	6.6133E-05	0.12925	6.3432E-05	0.26401	0.00012956	490.7652912054064	44.074	0.41082	43.996	43.762	44.173	-0.078373					18	7	3	0	0	0	0.071351	1	16713	16713		64.236	30.049	1	24002000			1273	4097	652	659	1273	1273					0.02551015542451296
AEHPIVIVC	9	Unmodified	_AEHPIVIVC_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-SECPEP	HCT116MG_D190212_S2	2	980.4945678710938	1	980.523364	979.516088	0.61027	0.00059838	-1.8394	-0.0018036	-1.2292	-0.0012052	980.5219459111452	44.02	0.25613	43.941	43.813	44.069	-0.078373					7	4	2	0	0	0	0.23771	1	16751	16751		20.454	2.3186	1	10273000			1274	4097	652	659	1274	1274					0.02551015542451296
AEHPKPSAC	9	Unmodified	_AEHPKPSAC_					0	0	0		CDKN1B|p.G97Vfs*22|1|0.17|ENSG00000111276|chr12:12718119-12718119|C/-|frameshift_variant;CDKN1B|p.K73Qfs*52|1|0.56|ENSG00000111276|chr12:12718051-12718052|-/G|frameshift_variant;CDKN1B|p.E126Gfs*10|1|0.67|ENSG00000111276|chr12:12718214-12718215|TG/-|frameshift_variant;CDKN1B|p.P137Rfs*8|1|0.56|ENSG00000111276|chr12:12718248-12718248|C/-|frameshift_variant;ENSG00000111276|ENST00000228872|CDKN1B	CDKN1B|p.G97Vfs*22|1|0.17|ENSG00000111276|chr12:12718119-12718119|C/-|frameshift_variant	CDKN1B|p.G97Vfs*22|1|0.17|ENSG00000111276|chr12:12718119-12718119|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2213134765625	2	470.221277	938.428001	0.096843	4.5537E-05	-0.041974	-1.9737E-05	0.054868	2.58E-05	470.2209715255118	15.173	0.57332	14.846	14.446	15.019	-0.32684					14	10	3	0	0	0	0.51301	1	5040	5040		16.149	1.3108	1	3886100			1275	394	653	660	1275	1275					-0.043676050481849416
AEHPLSRAEA	10	Unmodified	_AEHPLSRAEA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S1	1	540.7756958007812	2	540.775262	1079.53597	0.41052	0.000222	0.41885	0.0002265	0.82937	0.0004485	540.7755074159626	18.949	0.36492	18.949	18.714	19.079	0					11	6	3	0	0	0	0.39053	1	6558	6558		55.249	27.62	1	9943300			1276	3750	654	661	1276	1276					-0.000615171932395242
AEHPLSRAEA	10	Unmodified	_AEHPLSRAEA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MSMS	HCT116MG_D190212_S1	1	360.8527526855469	3	360.8526	1079.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.028	1	19.028	18.528	19.528	0								0	0	0	0.90752	1	6575	6575		14.218	8.8155	1				1277	3750	654	661	1277	1277					-0.000615171932395242
AEHPLSRAEA	10	Unmodified	_AEHPLSRAEA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S2	2	540.7755737304688	2	540.775262	1079.53597	0.48049	0.00025984	-0.098003	-5.2998E-05	0.38248	0.00020684	540.7751868304165	19.648	0.31176	19.273	19.091	19.403	-0.37503					17	5	4	0	0	0	0.051988	1	6813	6813		105.35	70.943	1	51485000			1278	3750	654	661	1278	1278					-0.000615171932395242
AEHPLSRAEA	10	Unmodified	_AEHPLSRAEA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S2	2	360.85247802734375	3	360.8526	1079.53597	-0.18265	-6.5909E-05	0.061454	2.2176E-05	-0.12119	-4.3733E-05	360.85261126019907	19.639	0.31176	19.264	19.091	19.403	-0.37503					11	5	3	0	0	0	0.31488	1	6831	6831		49.159	28.745	1	11950000			1279	3750	654	661	1279	1279					-0.000615171932395242
AEHPLSRAEA	10	Unmodified	_AEHPLSRAEA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S3	3	540.7758178710938	2	540.775262	1079.53597	0.46547	0.00025171	0.36585	0.00019784	0.83132	0.00044956	540.775484692507	18.519	0.26051	18.596	18.413	18.674	0.076334					8	4	2	0	0	0	0.6154	1	6297	6297		37.075	12.401	1	3978800			1280	3750	654	661	1280	1280					-0.000615171932395242
AEHPLSRAEAA	11	Unmodified	_AEHPLSRAEAA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S2	2	576.2938842773438	2	576.293819	1150.57309	0.3386	0.00019513	0.14831	8.5468E-05	0.48691	0.0002806	576.2939446483526	20.472	0.31816	20.092	19.865	20.183	-0.37949					13	5	3	0	0	0	0.035039	1	7144	7144		112.04	79.255	1	20842000			1281	3750	655	662	1281	1281					0.003821543525418747
AEHPLSRAEAA	11	Unmodified	_AEHPLSRAEAA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S3	3	576.2940673828125	2	576.293819	1150.57309	0.42925	0.00024738	0.35227	0.00020301	0.78152	0.00045038	576.2937278766565	19.435	0.31262	19.494	19.281	19.594	0.05983					11	5	3	0	0	0	0.31279	1	6666	6666		62.78	26.274	1	5439500			1282	3750	655	662	1282	1282					0.003821543525418747
AEHPLSRAEAA	11	Unmodified	_AEHPLSRAEAA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S3	3	384.5314025878906	3	384.531638	1150.57309	-0.093425	-3.5925E-05	-0.024185	-9.2999E-06	-0.11761	-4.5225E-05	384.5314786500232	19.456	0.31262	19.516	19.281	19.594	0.05983					9	5	2	0	0	0	0.48205	1	6688	6688		33.632	22.733	1	2939300			1283	3750	655	662	1283	1283					0.003821543525418747
AEHPLSRAEAA	11	Unmodified	_AEHPLSRAEAA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S4	4	576.29345703125	2	576.293819	1150.57309	0.40209	0.00023172	-0.21836	-0.00012584	0.18373	0.00010588	576.2935831729984	19.852	0.25513	19.658	19.533	19.788	-0.19367					7	4	2	0	0	0	0.6541	1	6789	6789		29.437	17.197	1	1318100			1284	3750	655	662	1284	1284					0.003821543525418747
AEHPTIKIFW	10	Unmodified	_AEHPTIKIFW_					0	0	0		ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	621.8388061523438	2	621.337498	1240.66044	0.32494	0.0002019	0.99838	0.00062033	1.3233	0.00082222	621.3372924739291	53.33	0.25764	53.14	52.966	53.223	-0.18922					10	4	3	0	0	0	0.056766	1	20523	20523		93.938	64.098	1	18483000			1285	4030	656	663	1285	1285					0.0497398029406213
AEHPVYNMV	9	Unmodified	_AEHPVYNMV_					0	0	0		TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant;TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant	TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	530.2503051757812	2	530.250034	1058.48552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.613	1	36.613	36.113	37.113	0								0	0	0	0.034673	1	13653	13653		78.149	44.047	1				1286	4629	657	664	1286	1286					-0.04138762842603683
AEHPVYNMV	9	Unmodified	_AEHPVYNMV_					0	0	0		TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant;TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant	TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2503662109375	2	530.250034	1058.48552	0.50231	0.00026635	0.6934	0.00036767	1.1957	0.00063402	530.2500455700821	36.674	0.61953	36.559	36.343	36.963	-0.11479					21	11	3	0	0	0	0.027492	1	13709	13709		88.904	52.859	1	74545000			1287	4629	657	664	1287	1287					-0.04138762842603683
AEHPVYNMV	9	Unmodified	_AEHPVYNMV_					0	0	0		TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant;TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant	TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	530.751708984375	2	530.250034	1058.48552	0.41331	0.00021916	-0.074527	-3.9518E-05	0.33878	0.00017964	530.2498782249266	36.836	0.46812	36.535	36.301	36.769	-0.30113					18	8	3	0	0	0	0.020181	1	13622	13622		96.285	63.979	1	29573000			1288	4629	657	664	1288	1288					-0.04138762842603683
AEHPVYNMV	9	Unmodified	_AEHPVYNMV_					0	0	0		TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant;TOPBP1|p.R964Efs*12|1|0.19|ENSG00000163781|chr3:133624090-133624090|T/-|frameshift_variant;TOPBP1|p.K1266Nfs*10|1|0.13|ENSG00000163781|chr3:133616887-133616887|T/-|frameshift_variant;TOPBP1|p.R1378Sfs*18|1|0.04|ENSG00000163781|chr3:133611043-133611044|-/AAAAGAGAATGTG|frameshift_variant;ENSG00000163781|ENST00000260810|TOPBP1	TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant	TOPBP1|p.F268Lfs*53|1|0.15|ENSG00000163781|chr3:133653463-133653463|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	530.2501220703125	2	530.250034	1058.48552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.025	1	36.641	36.141	37.141	-0.38486								0	0	0	0.038113	1	13572	13572		74.929	42.143	1				1289	4629	657	664	1289	1289					-0.04138762842603683
AEHQLPMPP	9	Unmodified	_AEHQLPMPP_					0	0	0		nc|ENSG00000237941|Q9H478|KCNQ1DN	nc|ENSG00000237941|Q9H478|KCNQ1DN	nc|ENSG00000237941|Q9H478|KCNQ1DN	MSMS	HCT116MG_D190212_S3	3	510.2538146972656	2	510.252577	1018.4906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.498	1	30.248	29.748	30.748	-0.24946								0	0	0	0.74436	1	11110	11110		16.942	1.0951	1				1290	9649	658	665	1290	1290					-0.017904589799968562
AEHRHRHVSPH	11	Unmodified	_AEHRHRHVSPH_					0	0	0			REV__ENST00000582788.5_1_17:37856514-37872404:+|nuORF	REV__ENST00000582788.5_1_17:37856514-37872404:+|nuORF	MSMS	HCT116MG_D190212_S1	1	454.9250183105469	3	454.901059	1361.68135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.905	1	15.905	15.405	16.405	0								0	0	0	0.94864	1	5317	5317		7.0371	1.8386	1		+		1291	16632	659	666	1291	1291					0.014973834463262392
AEHRIDFVA	9	Unmodified	_AEHRIDFVA_					0	0	0		ENST00000488235.1_1_3:195969427-195975126:-|nuORF;PCYT1A|p.K281Sfs*19|1|0.32|ENSG00000161217|chr3:196239602-196239602|T/-|frameshift_variant;ENSG00000161217|ENST00000431016|PCYT1A	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	529.2748413085938	2	529.274898	1056.53524	0.33695	0.00017834	0.0040263	2.131E-06	0.34097	0.00018047	529.2748399787836	34.118	0.46967	34.118	33.919	34.389	0					18	8	3	0	0	0	0.016412	1	12643	12643		100.09	54.391	1	41111000			1292	4484	660	667	1292	1292					0.009236881577180611
AEHRIDFVA	9	Unmodified	_AEHRIDFVA_					0	0	0		ENST00000488235.1_1_3:195969427-195975126:-|nuORF;PCYT1A|p.K281Sfs*19|1|0.32|ENSG00000161217|chr3:196239602-196239602|T/-|frameshift_variant;ENSG00000161217|ENST00000431016|PCYT1A	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	353.185546875	3	353.185691	1056.53524	-0.065091	-2.2989E-05	-0.11584	-4.0912E-05	-0.18093	-6.3901E-05	353.18556953898224	34.12	0.26085	34.12	33.972	34.233	0					6	4	2	0	0	0	0.32978	1	12669	12669		26.021	16.638	1	6053000			1293	4484	660	667	1293	1293					0.009236881577180611
AEHRIDFVA	9	Unmodified	_AEHRIDFVA_					0	0	0		ENST00000488235.1_1_3:195969427-195975126:-|nuORF;PCYT1A|p.K281Sfs*19|1|0.32|ENSG00000161217|chr3:196239602-196239602|T/-|frameshift_variant;ENSG00000161217|ENST00000431016|PCYT1A	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2750244140625	2	529.274898	1056.53524	0.54745	0.00028975	-0.25411	-0.00013449	0.29335	0.00015526	529.2747509997174	34.309	0.466	34.134	33.916	34.382	-0.17512					22	8	4	0	0	0	0.0068427	1	12749	12749		121.53	67.701	1	277060000			1294	4484	660	667	1294	1294					0.009236881577180611
AEHRIDFVA	9	Unmodified	_AEHRIDFVA_					0	0	0		ENST00000488235.1_1_3:195969427-195975126:-|nuORF;PCYT1A|p.K281Sfs*19|1|0.32|ENSG00000161217|chr3:196239602-196239602|T/-|frameshift_variant;ENSG00000161217|ENST00000431016|PCYT1A	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	353.1855163574219	3	353.185691	1056.53524	-0.017733	-6.2632E-06	-0.13461	-4.7541E-05	-0.15234	-5.3804E-05	353.18554313025885	34.319	0.25974	34.144	34.02	34.279	-0.17511					10	4	3	0	0	0	0.11023	1	12774	12774		43.982	16.759	1	37701000			1295	4484	660	667	1295	1295					0.009236881577180611
AEHRIDFVA	9	Unmodified	_AEHRIDFVA_					0	0	0		ENST00000488235.1_1_3:195969427-195975126:-|nuORF;PCYT1A|p.K281Sfs*19|1|0.32|ENSG00000161217|chr3:196239602-196239602|T/-|frameshift_variant;ENSG00000161217|ENST00000431016|PCYT1A	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	MSMS	HCT116MG_D190212_S3	3	353.18524169921875	3	353.185691	1056.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.514	1	34.217	33.717	34.717	-0.29707								0	0	0	0.64932	1	12706	12706		15.739	2.866	1				1296	4484	660	667	1296	1296					0.009236881577180611
AEHRIDFVA	9	Unmodified	_AEHRIDFVA_					0	0	0		ENST00000488235.1_1_3:195969427-195975126:-|nuORF;PCYT1A|p.K281Sfs*19|1|0.32|ENSG00000161217|chr3:196239602-196239602|T/-|frameshift_variant;ENSG00000161217|ENST00000431016|PCYT1A	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	ENST00000488235.1_1_3:195969427-195975126:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	529.2747192382812	2	529.274898	1056.53524	0.35125	0.00018591	-0.45129	-0.00023885	-0.10004	-5.2947E-05	529.2746069414875	34.647	0.40345	34.262	34.087	34.491	-0.38558					10	7	2	0	0	0	0.029121	1	12668	12668		87.258	49.083	1	11174000			1297	4484	660	667	1297	1297					0.009236881577180611
AEHRMLVVA	9	Unmodified	_AEHRMLVVA_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;ENST00000517465.1_1_8:103270587-103274193:-|nuORF	nc|ENSG00000104517|O95071-2|UBR5;ENST00000517465.1_1_8:103270587-103274193:-|nuORF	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2820434570312	2	513.281669	1024.54878	0.23168	0.00011892	0.37504	0.0001925	0.60672	0.00031142	513.2820167854852	32.667	0.36515	32.456	32.221	32.586	-0.21135					10	6	2	0	0	0	0.32155	1	12129	12129		28.495	18.421	1	9745200			1298	1937;8540	661	668	1298	1298					0.037492226653057514
AEHRSGLVP	9	Unmodified	_AEHRSGLVP_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;HDLBP|p.T180Lfs*48|1|0.33|ENSG00000115677|chr2:241256719-241256719|T/-|frameshift_variant;ENST00000449864.5_3_2:242206025-242206308:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S1	1	483.26165771484375	2	483.261791	964.509028	0.25822	0.00012479	0.074667	3.6084E-05	0.33289	0.00016087	483.2617388991418	26.527	0.52086	26.527	26.136	26.657	0					19	9	3	0	0	0	0.14362	1	9522	9522		49.554	7.4597	1	12203000			1299	2480	662	669	1299	1299					0.02535418986235527
AEHRSGLVP	9	Unmodified	_AEHRSGLVP_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;HDLBP|p.T180Lfs*48|1|0.33|ENSG00000115677|chr2:241256719-241256719|T/-|frameshift_variant;ENST00000449864.5_3_2:242206025-242206308:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S2	2	483.261962890625	2	483.261791	964.509028	0.13401	6.4761E-05	-0.01851	-8.945E-06	0.1155	5.5816E-05	483.2618013399916	26.878	0.67945	26.525	26.033	26.713	-0.35254					30	12	3	0	0	0	0.071914	1	9684	9684		63.961	13.105	1	37786000			1300	2480	662	669	1300	1300					0.02535418986235527
AEHRSYPP	8	Unmodified	_AEHRSYPP_					0	0	0		nc|ENSG00000156011|Q9NYI0-3|PSD3;PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;ENST00000518315.5_1_8:18393255-18632402:-|nuORF	nc|ENSG00000156011|Q9NYI0-3|PSD3	nc|ENSG00000156011|Q9NYI0-3|PSD3	MULTI-SECPEP	HCT116MG_D190212_S3	3	478.2275390625	2	478.732866	955.451179	0.16154	7.7334E-05	-3.2029	-0.0015333	-3.0413	-0.001456	478.73135135444306	22.588	0.36468	22.569	22.283	22.647	-0.018869					8	6	2	0	0	0	0.30262	1	7881	7881		4.756	0.42677	1	4585700			1301	4271	663	670	1301	1301					-0.02832842939199054
AEHSELKSP	9	Unmodified	_AEHSELKSP_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MSMS	HCT116MG_D190212_S2	2	499.2508239746094	2	499.251089	996.487624	0.24564	0.00012264	0.20596	0.00010283	0.4516	0.00022546	499.2511445530334	19.048	0.67779	18.679	18.314	18.992	-0.3695					26	12	3	0	0	0	0.01405	1	6570	6570		103.35	57.333	1	9601300			1302	1975	664	671	1302	1302					-0.010760108331396623
AEHSEPPQA	9	Unmodified	_AEHSEPPQA_					0	0	0		ENSG00000125534|ENST00000370179|PPDPF	ENSG00000125534|ENST00000370179|PPDPF	ENSG00000125534|ENST00000370179|PPDPF	MULTI-MSMS	HCT116MG_D190212_S1	1	483.219970703125	2	483.219788	964.425024	0.22777	0.00011006	-0.10538	-5.0922E-05	0.12239	5.9142E-05	483.219710763808	16.395	2.2931	16.395	16.213	18.506	0					76	43	3	0	0	0	0.012496	4	5737	5499;5702;5737;6100		107.19	71.06	1	10583000			1303	2894	665	672	1303;1304;1305;1306	1305					-0.05861156901335107
AEHSEPPQA	9	Unmodified	_AEHSEPPQA_					0	0	0		ENSG00000125534|ENST00000370179|PPDPF	ENSG00000125534|ENST00000370179|PPDPF	ENSG00000125534|ENST00000370179|PPDPF	MULTI-MSMS	HCT116MG_D190212_S2	2	483.2197265625	2	483.219788	964.425024	0.171	8.263E-05	0.10275	4.965E-05	0.27375	0.00013228	483.21975972214193	16.69	2.0344	16.348	16.152	18.186	-0.34183					93	38	3	0	0	0	0.0057285	3	5628	5628;5861;6096		131.27	87.409	1	40847000			1304	2894	665	672	1307;1308;1309	1307					-0.05861156901335107
AEHSEPPQA	9	Unmodified	_AEHSEPPQA_					0	0	0		ENSG00000125534|ENST00000370179|PPDPF	ENSG00000125534|ENST00000370179|PPDPF	ENSG00000125534|ENST00000370179|PPDPF	MULTI-MSMS	HCT116MG_D190212_S2	2	965.4320678710938	1	965.4323	964.425024	0.63221	0.00061036	-0.21508	-0.00020765	0.41713	0.00040271	965.4319136635726	16.728	0.67625	16.386	16.152	16.828	-0.34183					16	12	2	0	0	0	0.011082	1	5663	5663		110.67	70.717	1	3422300			1305	2894	665	672	1310	1310					-0.05861156901335107
AEHSEPPQA	9	Unmodified	_AEHSEPPQA_					0	0	0		ENSG00000125534|ENST00000370179|PPDPF	ENSG00000125534|ENST00000370179|PPDPF	ENSG00000125534|ENST00000370179|PPDPF	MSMS	HCT116MG_D190212_S3	3	483.2196044921875	2	483.219788	964.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.835	1	15.921	15.421	16.421	0.085423								0	0	0	0.017042	1	5211	5211		96.111	65.474	1				1306	2894	665	672	1311	1311					-0.05861156901335107
AEHSFSNGA	9	Unmodified	_AEHSFSNGA_					0	0	0		CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6	CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	460.1991271972656	2	460.198856	918.383159	0.0088662	4.0802E-06	0.16698	7.6842E-05	0.17584	8.0922E-05	460.19903306883685	19.626	0.15656	19.626	19.495	19.652	0					4	2	2	0	0	0	0.097615	1	6825	6825		58.679	26.373	1	4422500			1307	429	666	673	1312	1312					-0.07929712589850624
AEHSFSNGA	9	Unmodified	_AEHSFSNGA_					0	0	0		CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6	CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	460.1990051269531	2	460.198856	918.383159	0.072285	3.3265E-05	0.21487	9.8881E-05	0.28715	0.00013215	460.19889885139025	20.166	0.41724	19.791	19.61	20.027	-0.37503					11	7	3	0	0	0	0.027492	1	7035	7035		88.904	48.946	1	22078000			1308	429	666	673	1313	1313					-0.07929712589850624
AEHSFSNGA	9	Unmodified	_AEHSFSNGA_					0	0	0		CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6	CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	CHD6|p.I2312Sfs*13|1|0.15|ENSG00000124177|chr20:41415191-41415191|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	460.198856	918.383159	0.39543	0.00018198	-0.26398	-0.00012148	0.13145	6.0494E-05	460.19861162408034	19.3	0.20831	19.36	19.229	19.438	0.05983	-0.23266	-0.00040125	NaN	88.904	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2070000			1309	429	666	673							-0.07929712589850624
AEHSLLDLP	9	Unmodified	_AEHSLLDLP_					0	0	0		ENSG00000224051|ENST00000343938|CPTP	ENSG00000224051|ENST00000343938|CPTP	ENSG00000224051|ENST00000343938|CPTP	MSMS	HCT116MG_D190212_S2	2	497.763916015625	2	497.763832	993.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.625	1	51.441	50.941	51.941	-0.18369								0	0	0	0.038654	1	19812	19812		74.423	23.568	1				1310	6482	667	674	1314	1314					0.01609463689283075
AEHSNPAEP	9	Unmodified	_AEHSNPAEP_					0	0	0			REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	MSMS	HCT116MG_D190212_S2	2	476.2113342285156	2	476.211963	950.409374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.453	1	17.104	16.604	17.604	-0.34933								0	0	0	0.76669	1	5941	5941		12.532	3.9383	1		+		1311	11170	668	675	1315	1315					-0.06781443418390154
AEHSPYYEA	9	Unmodified	_AEHSPYYEA_					0	0	0		ENSG00000126602|ENST00000246957|TRAP1;nc|ENSG00000126602|Q12931-2|TRAP1	ENSG00000126602|ENST00000246957|TRAP1	ENSG00000126602|ENST00000246957|TRAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	533.7279663085938	2	533.727446	1065.44034	0.58527	0.00031237	0.95154	0.00050786	1.5368	0.00082024	533.728005018989	26.457	0.41655	26.308	26.098	26.515	-0.14924					16	7	3	0	0	0	0.042978	2	9485	9485;9500		78.149	55.413	1	17083000			1312	2942	669	676	1316;1317	1316					-0.08976290104146756
AEHSPYYEA	9	Unmodified	_AEHSPYYEA_					0	0	0		ENSG00000126602|ENST00000246957|TRAP1;nc|ENSG00000126602|Q12931-2|TRAP1	ENSG00000126602|ENST00000246957|TRAP1	ENSG00000126602|ENST00000246957|TRAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	533.727783203125	2	533.727446	1065.44034	0.39049	0.00020841	0.85529	0.00045649	1.2458	0.00066491	533.7278007639977	26.683	0.25978	26.382	26.234	26.493	-0.30087					10	4	3	0	0	0	0.12994	1	9517	9517		52.268	28.248	1	8136000			1313	2942	669	676	1318	1318					-0.08976290104146756
AEHWECQP	8	Unmodified	_AEHWECQP_					0	0	0		ENST00000330871.3_1_17:76353271-76353499:-|nuORF	ENST00000330871.3_1_17:76353271-76353499:-|nuORF	ENST00000330871.3_1_17:76353271-76353499:-|nuORF	MSMS	HCT116MG_D190212_S2	2	500.20489501953125	2	500.203084	998.391615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.532	1	24.152	23.652	24.652	-0.38003								0	0	0	0.8837	1	8795	8795		9.3474	0.75416	1				1314	7157	670	677	1319	1319					-0.10764481944875115
AEHYSSVYA	9	Unmodified	_AEHYSSVYA_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-SECPEP	HCT116MG_D190212_S2	2	513.2728271484375	2	513.729989	1025.44543	0.47553	0.00024429	-0.047875	-2.4595E-05	0.42766	0.0002197	513.729817621491	27.348	0.31007	26.996	26.818	27.128	-0.35254					12	5	3	0	0	0	0.17767	1	9964	9964		32.305	12.944	1	22143000			1315	5132	671	678	1320	1320					-0.06627986241505823
AEHYSSVYA	9	Unmodified	_AEHYSSVYA_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S3	3	513.7296142578125	2	513.729989	1025.44543	0.21754	0.00011176	0.49708	0.00025536	0.71462	0.00036712	513.7302631161072	27.159	0.20834	26.99	26.859	27.068	-0.16933					6	3	2	0	0	0	0.071351	1	9788	9788		64.236	37.968	1	5579200			1316	5132	671	678	1321	1321					-0.06627986241505823
AEIAESVQA	9	Unmodified	_AEIAESVQA_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	917.4579467773438	1	917.457453	916.450176	0.69029	0.00063332	0.010797	9.9058E-06	0.70109	0.00064322	917.4573893809826	30.789	0.32988	30.424	30.287	30.616	-0.36416					12	7	2	0	0	0	0.063511	1	11135	11135		68.081	2.8457	1	10404000			1317	1904	672	679	1322	1322					-0.011391020987616685
AEIAESVQA	9	Unmodified	_AEIAESVQA_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	459.2323303222656	2	459.232364	916.450176	0.086845	3.9882E-05	0.012141	5.5756E-06	0.098987	4.5458E-05	459.2322543476699	30.799	0.25804	30.435	30.307	30.565	-0.36416					10	5	2	0	0	0	0.35128	1	11161	11161		25.399	1.3787	1	7242200			1318	1904	672	679	1323	1323					-0.011391020987616685
AEIAESVQA	9	Unmodified	_AEIAESVQA_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		1	917.457453	916.450176	0.91829	0.0008425	0.10734	9.8477E-05	1.0256	0.00094097	917.4571106558051	30.321	0.1552	30.321	30.244	30.399	0	-0.047995	0.00011721	NaN	68.081	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1985500			1319	1904	672	679							-0.011391020987616685
AEIAESVQA	9	Unmodified	_AEIAESVQA_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	459.232364	916.450176	0.32925	0.0001512	-0.57295	-0.00026312	-0.24369	-0.00011191	459.2319758543663	30.683	0.33278	30.422	30.324	30.656	-0.26071	-0.0062752	-0.00038844	NaN	25.399	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6628900			1320	1904	672	679							-0.011391020987616685
AEIAHNVSS	9	Unmodified	_AEIAHNVSS_					0	0	0		ENST00000458542.1_1_3:25791186-25791384:+|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	464.2301025390625	2	464.230156	926.445759	0.058396	2.7109E-05	0.30545	0.0001418	0.36384	0.00016891	464.23031247324025	19.105	0.26029	19.105	18.975	19.235	0					7	4	2	0	0	0	0.019537	1	6615	6615		96.936	30.479	1	10253000			1321	3878	673	680	1324	1324					-0.02040566521668552
AEIAHNVSS	9	Unmodified	_AEIAHNVSS_					0	0	0		ENST00000458542.1_1_3:25791186-25791384:+|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	464.2301330566406	2	464.230156	926.445759	0.19076	8.8557E-05	0.009338	4.335E-06	0.2001	9.2892E-05	464.23009057974787	19.595	0.36391	19.22	19.039	19.403	-0.37503					15	6	3	0	0	0	0.029121	1	6805	6805		87.258	20.802	1	92485000			1322	3878	673	680	1325	1325					-0.02040566521668552
AEIAHNVSS	9	Unmodified	_AEIAHNVSS_					0	0	0		ENST00000458542.1_1_3:25791186-25791384:+|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	927.4540405273438	1	927.453036	926.445759	1.0178	0.00094399	-0.17167	-0.00015922	0.84616	0.00078478	927.4527421768214	19.595	0.20745	19.22	19.091	19.298	-0.37503					6	3	2	0	0	0	0.0050238	1	6828	6828		137.42	59.274	1	13192000			1323	3878	673	680	1326	1326					-0.02040566521668552
AEIAHNVSS	9	Unmodified	_AEIAHNVSS_					0	0	0		ENST00000458542.1_1_3:25791186-25791384:+|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	464.2301940917969	2	464.230156	926.445759	0.31712	0.00014722	-0.16552	-7.6838E-05	0.1516	7.0379E-05	464.23000240165504	18.832	0.41626	18.901	18.771	19.187	0.069159					21	7	4	0	0	0	0.029121	2	6423	6423;6476		87.258	29.536	1	77315000			1324	3878	673	680	1327;1328	1327					-0.02040566521668552
AEIAHNVSS	9	Unmodified	_AEIAHNVSS_					0	0	0		ENST00000458542.1_1_3:25791186-25791384:+|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	927.4532470703125	1	927.453036	926.445759	0.90874	0.00084281	-0.33325	-0.00030908	0.57549	0.00053374	927.4526711251827	18.832	0.26038	18.901	18.771	19.031	0.069159					6	4	2	0	0	0	0.0045841	1	6447	6447		142.08	63.93	1	5963000			1325	3878	673	680	1329	1329					-0.02040566521668552
AEIAHNVSS	9	Unmodified	_AEIAHNVSS_					0	0	0		ENST00000458542.1_1_3:25791186-25791384:+|nuORF;ENSG00000144713|ENST00000429711|RPL32	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	ENST00000458542.1_1_3:25791186-25791384:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	464.23004150390625	2	464.230156	926.445759	-0.048281	-2.2414E-05	0.1991	9.2427E-05	0.15082	7.0014E-05	464.2301204254548	19.134	0.41595	18.947	18.817	19.233	-0.18674					15	7	3	0	0	0	0.019537	1	6470	6470		96.936	36.862	1	20482000			1326	3878	673	680	1330	1330					-0.02040566521668552
AEIAKHSVA	9	Unmodified	_AEIAKHSVA_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	HCT116MG_D190212_S3	3	463.25823974609375	2	463.258717	924.50288	0.062792	2.9089E-05	-0.48913	-0.00022659	-0.42634	-0.0001975	463.25842371358317	17.426	0.20808	17.508	17.377	17.585	0.081358					5	3	2	0	0	0	0.58135	1	5882	5882		12.241	2.1667	1	2127700			1327	2812	674	681	1331	1331					0.037609007547075635
AEIAKLKAA	9	Unmodified	_AEIAKLKAA_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MSMS	HCT116MG_D190212_S3	3	457.7872009277344	2	457.78711	913.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.364	1	24.28	23.78	24.78	-0.083694								0	0	0	0.76603	1	8648	8648		14.838	3.198	1				1328	2600	675	682	1332	1332					0.09942948311220334
AEIAMELAR	9	Unmodified	_AEIAMELAR_					0	0	0			REV__ENSG00000136463|ENST00000258975|TACO1	REV__ENSG00000136463|ENST00000258975|TACO1	MULTI-MSMS	HCT116MG_D190212_S4	4	502.26568603515625	2	502.265684	1002.51682	0.34763	0.00017461	-0.10761	-5.4051E-05	0.24002	0.00012055	502.2655357275593	41.932	0.24115	41.556	41.442	41.683	-0.37637					6	4	2	0	0	0	0.21258	1	15420	15420		39.95	1.335	1	3368200	+		1329	12132	676	683	1333	1333					0.015658101914937106
AEIAMELAR	9	Unmodified	_AEIAMELAR_					0	0	0			REV__ENSG00000136463|ENST00000258975|TACO1	REV__ENSG00000136463|ENST00000258975|TACO1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	502.265684	1002.51682	0.34763	0.00017461	-0.10761	-5.4051E-05	0.24002	0.00012055	502.2655357275593	41.932	0.24115	41.556	41.442	41.683	-0.37637	-0.0022157	-0.0001536	NaN	39.95	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3368200	+		1330	12132	676	683							0.015658101914937106
AEIANDLHP	9	Unmodified	_AEIANDLHP_					0	0	0			REV__ENST00000233699.8_1_2:75185926-75196546:+|nuORF	REV__ENST00000233699.8_1_2:75185926-75196546:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	490.28570556640625	2	490.245806	978.47706	-0.091687	-4.4949E-05	-1.1499	-0.00056375	-1.2416	-0.0006087	490.24520324844053	34.712	0.31143	34.415	34.233	34.544	-0.29706					10	5	3	0	0	0	0.24622	1	12796	12796		11.64	0.81637	1	3380800	+		1331	14551	677	684	1334	1334					-0.013039934875905601
AEIDAHLV	8	Unmodified	_AEIDAHLV_					0	0	0		ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	434.2318115234375	2	434.232168	866.449782	-0.27048	-0.00011745	-0.0817	-3.5477E-05	-0.35218	-0.00015293	434.2320626624323	37.89	0.20819	37.89	37.759	37.968	0					5	3	2	0	0	0	0.23352	1	14195	14195		67.035	10.494	1	8207200			1332	1737	678	685	1335	1335					0.011215229720505704
AEIDAHLV	8	Unmodified	_AEIDAHLV_					0	0	0		ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	434.23162841796875	2	434.232168	866.449782	-0.22264	-9.6677E-05	-0.25825	-0.00011214	-0.48089	-0.00020882	434.2320210274317	37.975	0.25817	37.882	37.753	38.011	-0.09301					7	4	2	0	0	0	0.32897	1	14268	14268		56.541	0	1	22763000			1333	1737	678	685	1336	1336					0.011215229720505704
AEIDAHLVA	9	Unmodified	_AEIDAHLVA_					0	0	0		ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	469.75054931640625	2	469.750724	937.486896	0.14884	6.9918E-05	-0.14042	-6.596E-05	0.0084245	3.9574E-06	469.7507235968132	36.95	0.25926	36.95	36.783	37.042	0					6	4	2	0	0	0	0.050578	1	13804	13804		74.423	26.077	1	11244000			1334	1737	679	686	1337	1337					0.01565194517809232
AEIDAHLVA	9	Unmodified	_AEIDAHLVA_					0	0	0		ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	469.7509460449219	2	469.750724	937.486896	0.25078	0.00011781	-0.086001	-4.0399E-05	0.16478	7.7406E-05	469.75063332731787	37.2	0.41644	36.899	36.665	37.081	-0.30137					16	7	3	0	0	0	0.010304	1	13754	13754		112.59	48.357	1	40167000			1335	1737	679	686	1338	1338					0.01565194517809232
AEIDAHLVA	9	Unmodified	_AEIDAHLVA_					0	0	0		ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	ENST00000554457.1_1_14:35786443-35786509:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	469.75079345703125	2	469.750724	937.486896	0.033389	1.5684E-05	0.29868	0.0001403	0.33207	0.00015599	469.7507938834065	37.281	0.35357	36.897	36.726	37.079	-0.3839					14	6	3	0	0	0	0.013464	1	13671	13671		104.8	40.563	1	33533000			1336	1737	679	686	1339	1339					0.01565194517809232
AEIDASNIV	9	Unmodified	_AEIDASNIV_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000610253.5_1_11:108042863-108061204:-|nuORF;NPAT|p.K1038Efs*20|1|0.37|ENSG00000149308|chr11:108161974-108161975|-/C|frameshift_variant;NPAT|p.H1279Qfs*13|1|0.22|ENSG00000149308|chr11:108161248-108161249|TA/-|frameshift_variant;NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	ENSG00000149308|ENST00000278612|NPAT;NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	931.475341796875	1	931.473103	930.465826	0.90495	0.00084293	0.072872	6.7878E-05	0.97782	0.00091081	931.4731406837667	41.955	0.31105	41.887	41.705	42.016	-0.068199					8	5	2	0	0	0	0.063511	1	15887	15887		68.081	22.06	1	35815000			1337	4055;9703	680	687	1340	1340					-0.0021881558171799043
AEIDASNIV	9	Unmodified	_AEIDASNIV_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000610253.5_1_11:108042863-108061204:-|nuORF;NPAT|p.K1038Efs*20|1|0.37|ENSG00000149308|chr11:108161974-108161975|-/C|frameshift_variant;NPAT|p.H1279Qfs*13|1|0.22|ENSG00000149308|chr11:108161248-108161249|TA/-|frameshift_variant;NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	ENSG00000149308|ENST00000278612|NPAT;NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	931.4735107421875	1	931.473103	930.465826	0.89447	0.00083318	0.18966	0.00017666	1.0841	0.0010098	931.4729112868162	42.161	0.36378	41.857	41.676	42.04	-0.30352					12	6	3	0	0	0	0.063511	1	15703	15703		68.081	18.148	1	15493000			1338	4055;9703	680	687	1341	1341					-0.0021881558171799043
AEIDASNIV	9	Unmodified	_AEIDASNIV_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000610253.5_1_11:108042863-108061204:-|nuORF;NPAT|p.K1038Efs*20|1|0.37|ENSG00000149308|chr11:108161974-108161975|-/C|frameshift_variant;NPAT|p.H1279Qfs*13|1|0.22|ENSG00000149308|chr11:108161248-108161249|TA/-|frameshift_variant;NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	ENSG00000149308|ENST00000278612|NPAT;NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	931.4744873046875	1	931.473103	930.465826	0.72383	0.00067423	0.34687	0.0003231	1.0707	0.00099733	931.4733271895365	42.224	0.31081	41.848	41.684	41.994	-0.37565					9	5	2	0	0	0	0.042978	1	15505	15505		78.149	23.376	1	4520100			1339	4055;9703	680	687	1342	1342					-0.0021881558171799043
AEIDKHFLE	9	Unmodified	_AEIDKHFLE_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	HCT116MG_D190212_S3	3	551.2817993164062	2	551.282389	1100.55022	0.33651	0.00018551	-1.0522	-0.00058006	-0.71569	-0.00039455	551.2816804486221	23.93	0.20849	23.869	23.739	23.947	-0.061449					5	3	2	0	0	0	0.29516	1	8481	8481		31.268	31.268	1	3027700	+		1340	14099	681	688	1343	1343					0.003971352350617963
AEIDKHFLE	9	Unmodified	_AEIDKHFLE_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MATCH	HCT116MG_D190212_S1	1		2	551.282389	1100.55022	0.4445	0.00024505	1.245	0.00068637	1.6895	0.00093142	551.2842834430057	23.474	0.26097	23.474	23.314	23.575	0	-0.19756	0.0024368	NaN	31.268	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4347100	+		1341	14099	681	688							0.003971352350617963
AEIDRRISA	9	Unmodified	_AEIDRRISA_					0	0	0		nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP;nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	MULTI-MSMS	HCT116MG_D190212_S2	2	515.787353515625	2	515.78563	1029.55671	0.45729	0.00023586	0.22683	0.00011699	0.68411	0.00035286	515.7856908562306	24.073	0.41545	23.69	23.456	23.871	-0.3832					25	7	4	0	0	0	0.0060369	1	8592	8592		128.57	31.637	1	302240000			1342	4108	682	689	1344	1344					0.04311073186431713
AEIDRRISA	9	Unmodified	_AEIDRRISA_					0	0	0		nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP;nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7857666015625	2	515.78563	1029.55671	0.24297	0.00012532	0.070085	3.6149E-05	0.31306	0.00016147	515.7855997925836	23.566	0.46909	23.526	23.343	23.812	-0.03968					21	8	4	0	0	0	0.0081783	1	8327	8327		117.84	24.672	1	90580000			1343	4108	682	689	1345	1345					0.04311073186431713
AEIDRRISA	9	Unmodified	_AEIDRRISA_					0	0	0		nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP;nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	MULTI-MSMS	HCT116MG_D190212_S4	4	516.2874145507812	2	515.78563	1029.55671	0.27935	0.00014409	0.12575	6.4859E-05	0.4051	0.00020894	515.7856411179881	23.857	0.31199	23.599	23.417	23.729	-0.25816					12	5	3	0	0	0	0.0064513	2	8371	8371;8378		124.95	28.017	1	30093000			1344	4108	682	689	1346;1347	1346					0.04311073186431713
AEIDRVIGQ	9	Unmodified	_AEIDRVIGQ_					0	0	0		ENST00000492633.5_1_1:60370173-60378128:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;CYP2J2|p.P474Qfs*6|1|0.16|ENSG00000134716|chr1:59893739-59893739|G/-|frameshift_variant;ENSG00000134716|ENST00000371204|CYP2J2	ENST00000492633.5_1_1:60370173-60378128:-|nuORF	ENST00000492633.5_1_1:60370173-60378128:-|nuORF	MSMS	HCT116MG_D190212_S3	3	500.7752990722656	2	500.774731	999.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.406	1	31.136	30.636	31.636	-0.27028								0	0	0	0.52331	1	11473	11473		27.629	4.4804	1				1345	630	683	690	1348	1348					0.035122684378507074
AEIDSIHQL	9	Unmodified	_AEIDSIHQL_					0	0	0		ENST00000503692.5_1_4:4422578-4426973:-|nuORF;ENSG00000168818|ENST00000306200|STX18	ENST00000503692.5_1_4:4422578-4426973:-|nuORF	ENST00000503692.5_1_4:4422578-4426973:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2667236328125	2	513.266739	1024.51892	0.17392	8.9268E-05	0.18521	9.5061E-05	0.35913	0.00018433	513.2666035930246	38.55	0.31709	38.466	38.227	38.544	-0.084618					10	5	3	0	0	0	0.071914	1	14491	14491		63.961	11.692	1	29438000			1346	5033	684	691	1349	1349					0.007645622009476938
AEIDSIHQL	9	Unmodified	_AEIDSIHQL_					0	0	0		ENST00000503692.5_1_4:4422578-4426973:-|nuORF;ENSG00000168818|ENST00000306200|STX18	ENST00000503692.5_1_4:4422578-4426973:-|nuORF	ENST00000503692.5_1_4:4422578-4426973:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	513.266845703125	2	513.266739	1024.51892	0.070561	3.6217E-05	0.2174	0.00011159	0.28797	0.0001478	513.2668089619093	38.749	0.46836	38.448	38.196	38.664	-0.30137					10	8	2	0	0	0	0.0094709	1	14381	14381		114.65	49.414	1	7594800			1347	5033	684	691	1350	1350					0.007645622009476938
AEIDSSQIITS	11	Unmodified	_AEIDSSQIITS_					0	0	0		PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant;ENSG00000078142|ENST00000262039|PIK3C3	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	582.29345703125	2	582.29315	1162.57175	0.39773	0.00023159	0.787	0.00045827	1.1847	0.00068986	582.2927964737554	36.94	0.41595	36.639	36.301	36.717	-0.30113					9	7	2	0	0	0	0.52297	1	13682	13682		43.982	10.537	1	4495700			1348	1360	685	692	1351	1351					-0.0030352452690749487
AEIEDPPIP	9	Unmodified	_AEIEDPPIP_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	HCT116MG_D190212_S1	1	980.493408203125	1	980.493504	979.486227	0.48784	0.00047833	-0.20555	-0.00020154	0.28229	0.00027678	980.4930947879451	43.665	0.61948	43.665	43.316	43.936	0					17	11	2	0	0	0	0.019399	1	16468	16468		97.075	19.09	1	18682000			1349	5289	686	693	1352	1352					-0.004336449219067617
AEIEDPPIP	9	Unmodified	_AEIEDPPIP_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	HCT116MG_D190212_S2	2	980.4945678710938	1	980.493504	979.486227	0.83775	0.00082141	-0.10426	-0.00010223	0.73349	0.00071918	980.4932987196198	43.728	1.4511	43.649	43.298	44.749	-0.078373					71	27	4	0	0	0	0.019399	2	16751	16521;16751		97.075	29.731	1	149850000			1350	5289	686	693	1353;1354	1354					-0.004336449219067617
AEIEDPPIP	9	Unmodified	_AEIEDPPIP_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	HCT116MG_D190212_S2	2	490.7507019042969	2	490.75039	979.486227	0.42062	0.00020642	-0.17812	-8.7412E-05	0.2425	0.00011901	490.75030993224	43.814	1.1901	43.736	43.298	44.488	-0.078373					45	22	4	0	0	0	0.019399	2	16544	16544;16783		97.075	39.603	1	56694000			1351	5289	686	693	1355;1356	1355					-0.004336449219067617
AEIEDPPIP	9	Unmodified	_AEIEDPPIP_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	HCT116MG_D190212_S3	3	980.4942626953125	1	980.493504	979.486227	0.87298	0.00085595	-0.18612	-0.00018249	0.68686	0.00067346	980.4932049746708	43.9	1.0281	43.594	43.24	44.268	-0.30616					55	19	3	0	0	0	0.019399	2	16327	16327;16558		97.075	29.731	1	51580000			1352	5289	686	693	1357;1358	1357					-0.004336449219067617
AEIEDPPIP	9	Unmodified	_AEIEDPPIP_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	HCT116MG_D190212_S3	3	490.75030517578125	2	490.75039	979.486227	0.24853	0.00012197	0.092765	4.5524E-05	0.3413	0.00016749	490.7503479261207	43.844	0.976	43.538	43.292	44.268	-0.30616					40	18	3	0	0	0	0.026974	2	16580	16351;16580		89.427	31.955	1	18923000			1353	5289	686	693	1359;1360	1360					-0.004336449219067617
AEIEDPPIP	9	Unmodified	_AEIEDPPIP_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	HCT116MG_D190212_S4	4	980.4942626953125	1	980.493504	979.486227	0.57211	0.00056095	0.20963	0.00020554	0.78174	0.00076649	980.493558993865	44	1.0642	43.626	43.316	44.38	-0.37373					47	25	3	0	0	0	0.019399	2	16144	16144;16390		97.075	39.603	1	17460000			1354	5289	686	693	1361;1362	1361					-0.004336449219067617
AEIEDPPIP	9	Unmodified	_AEIEDPPIP_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant;SMARCC1|p.K261Q|1|0.31|ENSG00000173473|chr3:47714426-47714426|T/G|missense_variant	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	HCT116MG_D190212_S4	4	490.750732421875	2	490.75039	979.486227	0.049746	2.4413E-05	0.24034	0.00011795	0.29009	0.00014236	490.7504652738745	44.04	0.85592	43.666	43.316	44.172	-0.37373					31	16	2	0	0	0	0.026974	2	16149	16149;16398		89.427	27.892	1	7696400			1355	5289	686	693	1363;1364	1363					-0.004336449219067617
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	586.324951171875	2	586.325119	1170.63569	0.63222	0.00037069	-0.39032	-0.00022885	0.2419	0.00014183	586.3248113111011	24.025	0.26115	24.025	23.889	24.15	0					9	4	3	0	0	0	0.16173	1	8603	8603		94.909	45.354	1	11891000		+	1356	558;541	687	694	1365	1365					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	586.3255004882812	2	586.325119	1170.63569	0.63919	0.00037477	-0.14594	-8.5566E-05	0.49325	0.00028921	586.325014705079	24.541	0.31306	24.161	23.979	24.292	-0.38003					14	5	4	0	0	0	0.0047017	1	8799	8799		177.58	97.98	1	108240000		+	1357	558;541	687	694	1366	1366					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	391.21942138671875	3	391.219172	1170.63569	0.19953	7.8062E-05	0.18457	7.2209E-05	0.38411	0.00015027	391.219148679488	24.541	0.26118	24.161	24.03	24.292	-0.38003					10	4	3	0	0	0	0.055752	1	8806	8806		97.284	40.176	1	24688000		+	1358	558;541	687	694	1367	1367					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	586.3252563476562	2	586.325119	1170.63569	0.37003	0.00021696	0.17325	0.00010158	0.54329	0.00031854	586.3251644957556	24.035	0.31261	23.973	23.843	24.155	-0.061449					14	5	4	0	0	0	0.038067	1	8520	8520		154.04	74.44	1	36140000		+	1359	558;541	687	694	1368	1368					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	391.2191162109375	3	391.219172	1170.63569	-0.17271	-6.7568E-05	0.16313	6.382E-05	-0.0095796	-3.7477E-06	391.21920643452637	24.041	0.31261	23.979	23.843	24.155	-0.061447					14	5	4	0	0	0	0.12923	1	8540	8540		84.06	46.289	1	14182000		+	1360	558;541	687	694	1369	1369					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S4	4	586.325439453125	2	586.325119	1170.63569	0.63804	0.0003741	-0.44426	-0.00026048	0.19378	0.00011362	586.3249364672964	24.372	0.31128	24.104	23.927	24.239	-0.26782					10	5	3	0	0	0	0.1315	1	8586	8586		108.26	52.759	1	10150000		+	1361	558;541	687	694	1370	1370					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S4	4	391.2191467285156	3	391.219172	1170.63569	0.24856	9.7242E-05	-0.45398	-0.0001776	-0.20542	-8.0363E-05	391.218972479355	24.332	0.20768	24.072	23.988	24.195	-0.25951					7	3	3	0	0	0	0.61628	1	8588	8588		33.632	11.833	1	3434300		+	1362	558;541	687	694	1371	1371					0.057193004207192644
AEIEGLKGQRA	11	Unmodified	_AEIEGLKGQRA_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MATCH	HCT116MG_D190212_S1	1		3	391.219172	1170.63569	-0.060069	-2.35E-05	-0.42264	-0.00016534	-0.48271	-0.00018884	391.55319470830085	24.019	0.20876	24.019	23.889	24.098	0	-0.038483	-0.00052584	NaN	97.284	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3541000		+	1363	558;541	687	694							0.057193004207192644
AEIEHFVDP	9	Unmodified	_AEIEHFVDP_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.7344970703125	2	528.753464	1055.49238	0.25864	0.00013676	-0.15179	-8.026E-05	0.10685	5.6496E-05	528.7536354262425	39.918	0.41402	39.845	39.636	40.05	-0.072838					11	7	2	0	0	0	0.21838	1	14988	14988		14.838	0	1	6319200			1364	2057	688	695	1372	1372					-0.03315126690381476
AEIEHFVDP	9	Unmodified	_AEIEHFVDP_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MSMS	HCT116MG_D190212_S3	3	528.75244140625	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.217	1	39.915	39.415	40.415	-0.30137								0	0	0	0.32965	1	14923	14923		37.974	3.5723	1				1365	2057	688	695	1373	1373					-0.03315126690381476
AEIEHHEM	8	Unmodified	_AEIEHHEM_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	HCT116MG_D190212_S2	2	498.21612548828125	2	498.216192	994.41783	0.39896	0.00019877	0.054561	2.7183E-05	0.45352	0.00022595	498.21611322069936	20.799	0.20884	20.42	20.289	20.498	-0.37949					5	3	2	0	0	0	0.64404	1	7313	7313		28.487	10.352	1	10618000			1366	4651	689	696	1374	1374					-0.07960212773400599
AEIEHHEM	8	Unmodified	_AEIEHHEM_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	498.216192	994.41783	0.40502	0.00020179	0.17157	8.5481E-05	0.5766	0.00028727	498.21624466510684	20.149	0.20893	20.149	20.018	20.227	0	-0.13562	4.1721E-05	NaN	28.487	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8738100			1367	4651	689	696							-0.07960212773400599
AEIEHHEMA	9	Unmodified	_AEIEHHEMA_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7345581054688	2	533.734748	1065.45494	0.43762	0.00023357	-0.42408	-0.00022634	0.01354	7.2268E-06	533.7345394674851	20.536	0.26642	20.157	20.023	20.289	-0.37949					6	4	2	0	0	0	0.077982	1	7208	7208		62.573	41.036	1	9429000			1368	4651	690	697	1375	1375					-0.07516541227641937
AEIEHHEMA	9	Unmodified	_AEIEHHEMA_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	HCT116MG_D190212_S3	3	533.7351684570312	2	533.734748	1065.45494	0.45205	0.00024128	-0.12675	-6.7648E-05	0.32531	0.00017363	533.7348412227373	19.612	0.20823	19.672	19.594	19.802	0.05983					5	3	2	0	0	0	0.14171	1	6764	6764		49.933	35.095	1	3550700			1369	4651	690	697	1376	1376					-0.07516541227641937
AEIEPEAQA	9	Unmodified	_AEIEPEAQA_					0	0	0		ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	957.4534301757812	1	957.452367	956.445091	0.76032	0.00072797	0.070449	6.7452E-05	0.83077	0.00079542	957.4525979845615	27.013	0.26068	26.843	26.703	26.964	-0.16933					7	4	2	0	0	0	0.0058997	1	9743	9743		129.77	51.044	1	3959500			1370	3869	691	698	1377	1377					-0.034874059613798636
AEIEPEAQA	9	Unmodified	_AEIEPEAQA_					0	0	0		ENST00000473899.1_1_2:220473145-220474007:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000473899.1_1_2:220473145-220474007:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	479.22967529296875	2	479.229822	956.445091	0.24953	0.00011958	0.13977	6.6983E-05	0.3893	0.00018657	479.2299234951055	27.04	0.26068	26.871	26.703	26.964	-0.16933					7	4	2	0	0	0	0.32978	1	9747	9747		27.629	8.3718	1	3431500			1371	3869	691	698	1378	1378					-0.034874059613798636
AEIESFNLS	9	Unmodified	_AEIESFNLS_					0	0	0			REV__NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant	REV__NBEA|p.V2250Lfs*10|1|0.36|ENSG00000172915|chr13:35550967-35550967|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	505.24346923828125	2	505.245472	1008.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.997	1	29.997	29.497	30.497	0								0	0	0	0.49326	1	10985	10985		29.082	5.9332	1		+		1372	13408	692	699	1379	1379					-0.027508329272677656
AEIFHSADA	9	Unmodified	_AEIFHSADA_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	HCT116MG_D190212_S2	2	480.7246398925781	2	480.724707	959.43486	0.1527	7.3409E-05	0.089155	4.2859E-05	0.24186	0.00011627	480.7247586493212	30.961	0.31013	30.694	30.56	30.87	-0.26704					10	5	3	0	0	0	0.027492	1	11426	11426		88.904	17.77	1	22111000			1373	9417	693	700	1380	1380					-0.0464796889596073
AEIFHSADA	9	Unmodified	_AEIFHSADA_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	HCT116MG_D190212_S3	3	480.7245788574219	2	480.724707	959.43486	0.12227	5.8778E-05	-0.024261	-1.1663E-05	0.098008	4.7115E-05	480.7246955570204	31.047	0.41751	30.787	30.604	31.022	-0.26071					11	7	2	0	0	0	0.020181	1	11335	11335		96.285	41.511	1	12634000			1374	9417	693	700	1381	1381					-0.0464796889596073
AEIFHSADA	9	Unmodified	_AEIFHSADA_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MSMS	HCT116MG_D190212_S4	4	480.7247009277344	2	480.724707	959.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.229	1	30.859	30.359	31.359	-0.37026								0	0	0	0.016928	1	11325	11325		96.285	41.511	1				1375	9417	693	700	1382	1382					-0.0464796889596073
AEIGAVTL	8	Unmodified	_AEIGAVTL_					0	0	0		ENST00000496583.1_1_19:54695101-54695536:+|nuORF;ENSG00000170892|ENST00000396388|TSEN34	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	773.4409790039062	1	773.440346	772.433069	1.0871	0.00084084	-0.13098	-0.00010131	0.95616	0.00073954	773.4402107144838	47.278	0.25926	47.156	46.974	47.233	-0.12175					6	4	2	0	0	0	0.09113	1	18044	18044		97.075	26.359	1	15698000			1376	5165	694	701	1383	1383					0.03775022086097124
AEIGAVTLV	9	Unmodified	_AEIGAVTLV_					0	0	0		ENST00000496583.1_1_19:54695101-54695536:+|nuORF;ENSG00000170892|ENST00000396388|TSEN34	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MSMS	HCT116MG_D190212_S3	3	436.7581787109375	2	436.758018	871.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.53	1	51.218	50.718	51.718	-0.31166								0	0	0	0.18646	1	19458	19458		48.346	8.3885	1				1377	5165	695	702	1384	1384					0.0605926666595451
AEIGEHVAP	9	Unmodified	_AEIGEHVAP_					0	0	0		CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	461.7351989746094	2	461.735074	921.455596	0.17191	7.9379E-05	0.046477	2.146E-05	0.21839	0.00010084	461.73501583331466	27.817	0.25575	27.475	27.295	27.551	-0.34201					11	4	3	0	0	0	0.035914	1	10125	10125		81.613	14.269	1	47934000			1378	312	696	703	1385	1385					-0.00827378516294175
AEIGEHVAP	9	Unmodified	_AEIGEHVAP_					0	0	0		CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	461.73516845703125	2	461.735074	921.455596	0.57686	0.00026636	-0.41432	-0.00019131	0.16254	7.505E-05	461.73482534979263	27.689	0.31181	27.5	27.309	27.621	-0.18847					13	5	3	0	0	0	0.023611	1	9988	9988		92.822	25.478	1	26393000			1379	312	696	703	1386	1386					-0.00827378516294175
AEIINPKTA	9	Unmodified	_AEIINPKTA_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MULTI-MSMS	HCT116MG_D190212_S3	3	478.77410888671875	2	478.7742	955.533846	0.18522	8.8677E-05	-1.0935	-0.00052356	-0.90833	-0.00043489	478.7734138199243	28.39	0.72972	28.184	27.551	28.281	-0.20593					17	13	2	0	0	0	0.19011	1	10276	10276		42.312	13.231	1	3269800			1380	1313	697	704	1387	1387					0.0543005406894963
AEIIQLVNA	9	Unmodified	_AEIIQLVNA_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S2	2	970.5590209960938	1	970.556773	969.549496	0.62427	0.00060589	2.4572	0.0023849	3.0815	0.0029907	970.5592371350755	51.324	0.25699	51.145	50.966	51.223	-0.17868					7	4	2	0	0	0	0.11023	1	19694	19694		56.177	16.22	1	20178000			1381	2370	698	705	1388	1388					0.06350340585993308
AEIIQLVNA	9	Unmodified	_AEIIQLVNA_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S2	2	485.7820129394531	2	485.782025	969.549496	0.17131	8.3219E-05	1.5603	0.00075797	1.7316	0.00084119	485.782943642162	51.341	0.36041	51.162	50.966	51.326	-0.17869					8	6	2	0	0	0	0.39784	1	19716	19716		22.736	0.98964	1	15270000			1382	2370	698	705	1389	1389					0.06350340585993308
AEIIQLVNA	9	Unmodified	_AEIIQLVNA_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S3	3	485.7821044921875	2	485.782025	969.549496	0.14367	6.9793E-05	0.24261	0.00011785	0.38628	0.00018765	485.78212735061896	51.523	0.31461	51.211	51.067	51.382	-0.31166					9	5	2	0	0	0	0.31596	1	19476	19476		29.082	8.667	1	5152200			1383	2370	698	705	1390	1390					0.06350340585993308
AEIISEIRA	9	Unmodified	_AEIISEIRA_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2853698730469	2	501.284931	1000.55531	0.58861	0.00029506	0.32499	0.00016291	0.9136	0.00045797	501.2849470818177	40.821	0.36157	40.751	40.519	40.881	-0.069626					13	6	3	0	0	0	0.011132	1	15410	15410		110.55	28.023	1	96651000			1384	2288	699	706	1391	1391					0.055054390976465584
AEIISEIRA	9	Unmodified	_AEIISEIRA_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	HCT116MG_D190212_S3	3	501.2850036621094	2	501.284931	1000.55531	0.58591	0.00029371	-0.2669	-0.00013379	0.31901	0.00015991	501.28479316428843	41.012	0.41781	40.71	40.527	40.945	-0.30185					18	7	3	0	0	0	0.0096523	1	15244	15244		114.2	28.56	1	44663000			1385	2288	699	706	1392	1392					0.055054390976465584
AEIISEIRA	9	Unmodified	_AEIISEIRA_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	HCT116MG_D190212_S4	4	501.7868957519531	2	501.284931	1000.55531	0.38627	0.00019363	-0.012829	-6.431E-06	0.37344	0.0001872	501.2849570409173	41.107	0.32137	40.73	40.574	40.896	-0.37732					15	6	3	0	0	0	0.0068427	1	15108	15108		121.53	39.005	1	31250000			1386	2288	699	706	1393	1393					0.055054390976465584
AEIKDGERLP	10	Unmodified	_AEIKDGERLP_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	HCT116MG_D190212_S2	2	564.8095092773438	2	564.306395	1126.59824	0.5697	0.00032148	2.206	0.0012448	2.7757	0.0015663	564.8088009424911	27.577	0.825	27.235	27.037	27.862	-0.34201					25	15	3	0	0	0	0.10957	2	10022	10022;10046		89.609	29.454	1	26113000			1387	5770	700	707	1394;1395	1394					0.04000209155083212
AEIKDGERLP	10	Unmodified	_AEIKDGERLP_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MSMS	HCT116MG_D190212_S2	2	376.1744689941406	3	376.540022	1126.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.752	1	27.41	26.91	27.91	-0.34201								0	0	0	0.83749	1	10094	10094		23.964	5.2429	1				1388	5770	700	707	1396	1396					0.04000209155083212
AEIKDGERLP	10	Unmodified	_AEIKDGERLP_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	HCT116MG_D190212_S3	3	376.539794921875	3	376.540022	1126.59824	0.03573	1.3454E-05	-0.15418	-5.8055E-05	-0.11845	-4.4601E-05	376.53993058173853	27.367	0.62405	27.198	27.016	27.64	-0.16933					14	11	2	0	0	0	0.20425	1	9876	9876		59.052	30.558	1	3392500			1389	5770	700	707	1397	1397					0.04000209155083212
AEIKDGERLP	10	Unmodified	_AEIKDGERLP_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	HCT116MG_D190212_S3	3	564.3060913085938	2	564.306395	1126.59824	0.53867	0.00030397	-0.11217	-6.3298E-05	0.4265	0.00024067	564.306217530473	27.424	0.67603	27.254	27.016	27.692	-0.16933					18	12	2	0	0	0	0.25786	1	9890	9890		68.76	21.165	1	2804400			1390	5770	700	707	1398	1398					0.04000209155083212
AEIKTTNEV	9	Unmodified	_AEIKTTNEV_					0	0	0		EML4|p.K562Rfs*6|1|0.07|ENSG00000143924|chr2:42303145-42303145|A/-|frameshift_variant;ENST00000406175.3_1_2:42513330-42557344:+|nuORF;nc|ENSG00000143924|Q9HC35-2|EML4;ENSG00000143924|ENST00000318522|EML4	EML4|p.K562Rfs*6|1|0.07|ENSG00000143924|chr2:42303145-42303145|A/-|frameshift_variant	EML4|p.K562Rfs*6|1|0.07|ENSG00000143924|chr2:42303145-42303145|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7666015625	2	502.766571	1003.51859	0.32113	0.00016145	0.74267	0.00037339	1.0638	0.00053484	502.766695068653	23.891	0.31282	23.83	23.686	23.999	-0.061449					11	5	3	0	0	0	0.0050238	1	8457	8457		137.42	52.152	1	6086000			1391	777	701	708	1399	1399					0.016971424810890312
AEIKTTNEV	9	Unmodified	_AEIKTTNEV_					0	0	0		EML4|p.K562Rfs*6|1|0.07|ENSG00000143924|chr2:42303145-42303145|A/-|frameshift_variant;ENST00000406175.3_1_2:42513330-42557344:+|nuORF;nc|ENSG00000143924|Q9HC35-2|EML4;ENSG00000143924|ENST00000318522|EML4	EML4|p.K562Rfs*6|1|0.07|ENSG00000143924|chr2:42303145-42303145|A/-|frameshift_variant	EML4|p.K562Rfs*6|1|0.07|ENSG00000143924|chr2:42303145-42303145|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	502.76629638671875	2	502.766571	1003.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.188	1	23.93	23.43	24.43	-0.25816								0	0	0	0.52331	1	8509	8509		27.629	3.6082	1				1392	777	701	708	1400	1400					0.016971424810890312
AEIKVKLIEA	10	Unmodified	_AEIKVKLIEA_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;NCAPG|p.I662Nfs*7|1|0.37|ENSG00000109805|chr4:17834391-17834392|-/A|frameshift_variant	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-SECPEP	HCT116MG_D190212_S1	1	557.2604370117188	2	557.347532	1112.68051	0.19744	0.00011004	1.1007	0.00061349	1.2982	0.00072353	557.8497546266159	39.065	0.15618	39.065	38.955	39.111	0					4	2	2	0	0	0	0.27536	1	14658	14658		29.281	6.623	1	3702700			1393	2220	702	709	1401	1401					0.12867731234041457
AEIKVKLIEA	10	Unmodified	_AEIKVKLIEA_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;NCAPG|p.I662Nfs*7|1|0.37|ENSG00000109805|chr4:17834391-17834392|-/A|frameshift_variant	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.2603149414062	2	557.347532	1112.68051	0.45352	0.00025277	-0.028522	-1.5896E-05	0.425	0.00023687	557.3474149148699	39.039	0.20651	38.954	38.806	39.012	-0.084618					8	3	3	0	0	0	0.28378	1	14701	14701		24.957	3.3669	1	23561000			1394	2220	702	709	1402	1402					0.12867731234041457
AEILELAGNAA	11	Unmodified	_AEILELAGNAA_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MSMS	HCT116MG_D190212_S2	2	536.2884521484375	2	536.287671	1070.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.825	1	48.681	48.181	49.181	-0.1437								0	0	0	0.66492	1	18666	18666		40.239	16.219	1				1395	5603;1633	703	710	1403	1403					0.028331178894859477
AEILELAGNAA	11	Unmodified	_AEILELAGNAA_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2879638671875	2	536.287671	1070.56079	0.67388	0.00036139	0.46244	0.000248	1.1363	0.00060939	536.287596641941	48.976	0.37062	48.66	48.499	48.87	-0.31596					9	6	2	0	0	0	0.24477	1	18446	18446		70.332	11.653	1	6136800			1396	5603;1633	703	710	1404	1404					0.028331178894859477
AEILELAGNAA	11	Unmodified	_AEILELAGNAA_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MSMS	HCT116MG_D190212_S3	3	1071.5689697265625	1	1071.56807	1070.56079	0.71883	0.00077027	-0.15953	-0.00017095	0.55929	0.00059932	1071.5677635988004	48.984	0.26381	48.668	48.499	48.763	-0.31596					7	4	2	0	0	0	0.24477	1	18448	18448		70.332	22.6	1	5663400			1397	5603;1633	703	710	1405	1405					0.028331178894859477
AEILELAGNAA	11	Unmodified	_AEILELAGNAA_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MSMS	HCT116MG_D190212_S4	4	536.2886352539062	2	536.287671	1070.56079	0.26186	0.00014043	0.61164	0.00032801	0.8735	0.00046845	536.287927103559	48.998	0.23762	48.633	48.525	48.763	-0.365					7	4	2	0	0	0	0.24477	1	18168	18168		70.332	18.064	1	8844900			1398	5603;1633	703	710	1406	1406					0.028331178894859477
AEILELAGNAA	11	Unmodified	_AEILELAGNAA_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1071.56807	1070.56079	0.60001	0.00064296	-0.76334	-0.00081797	-0.16333	-0.00017502	1072.5697545685673	48.786	0.15269	48.643	48.54	48.693	-0.1437	0.00070456	-0.00078006	NaN	70.332	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25931000			1399	5603;1633	703	710							0.028331178894859477
AEILELAGNAA	11	Unmodified	_AEILELAGNAA_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000099284|ENST00000373255|MACROH2A2	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1071.56807	1070.56079	0.39543	0.00042373	0.15358	0.00016457	0.549	0.00058829	1071.5682663680118	48.98	0.18574	48.615	48.525	48.711	-0.365	-0.026592	0.00020248	NaN	70.332	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2873700			1400	5603;1633	703	710							0.028331178894859477
AEILNGKEISA	11	Unmodified	_AEILNGKEISA_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF;ENST00000554739.5_1_14:64855058-64855755:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S1	1	572.8147583007812	2	572.814053	1143.61355	0.43573	0.00024959	0.22098	0.00012658	0.65671	0.00037617	572.8141932675005	34.727	0.31129	34.727	34.545	34.857	0					12	5	3	0	0	0	2.9679E-05	1	12899	12899		164.85	67.915	1	47386000			1401	1727	704	711	1407	1407					0.04749075952304338
AEILNGKEISA	11	Unmodified	_AEILNGKEISA_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF;ENST00000554739.5_1_14:64855058-64855755:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S2	2	1144.6204833984375	1	1144.62083	1143.61355	0.71078	0.00081357	-0.62315	-0.00071328	0.087624	0.0001003	1144.6198104315154	34.79	0.25937	34.631	34.502	34.761	-0.15834					7	4	2	0	0	0	0.00052963	1	12979	12979		157.24	64.078	1	38909000			1402	1727	704	711	1408	1408					0.04749075952304338
AEILNGKEISA	11	Unmodified	_AEILNGKEISA_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF;ENST00000554739.5_1_14:64855058-64855755:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S2	2	572.8142700195312	2	572.814053	1143.61355	0.52564	0.0003011	-0.10085	-5.7766E-05	0.4248	0.00024333	572.8139113934661	34.79	0.46622	34.631	34.45	34.916	-0.15834					23	8	4	0	0	0	0.57187	1	12998	12998		38.559	5.1139	1	506210000			1403	1727	704	711	1409	1409					0.04749075952304338
AEILNGKEISA	11	Unmodified	_AEILNGKEISA_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF;ENST00000554739.5_1_14:64855058-64855755:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S3	3	572.8142700195312	2	572.814053	1143.61355	0.44061	0.00025239	-0.034602	-1.9821E-05	0.40601	0.00023257	572.8140254888526	34.979	0.46722	34.682	34.544	35.011	-0.29707					22	8	4	0	0	0	3.459E-07	1	12892	12892		188.38	98.977	1	157850000			1404	1727	704	711	1410	1410					0.04749075952304338
AEILNGKEISA	11	Unmodified	_AEILNGKEISA_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF;ENST00000554739.5_1_14:64855058-64855755:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S4	4	572.814697265625	2	572.814053	1143.61355	0.5696	0.00032627	-0.062519	-3.5812E-05	0.50708	0.00029046	572.8139678349239	35.11	0.36289	34.724	34.542	34.905	-0.38606					17	6	4	0	0	0	1.3724E-05	1	12835	12835		172.26	72.506	1	61698000			1405	1727	704	711	1411	1411					0.04749075952304338
AEILSEMRA	9	Unmodified	_AEILSEMRA_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	HCT116MG_D190212_S3	3	510.2632141113281	2	510.263142	1018.51173	0.29082	0.0001484	0.0033003	1.684E-06	0.29412	0.00015008	510.2631020016221	40.699	0.31276	40.397	40.215	40.528	-0.30161					11	5	3	0	0	0	0.032914	1	15124	15124		83.429	11.506	1	8028800			1406	2288	705	712	1412	1412					0.0032150632887351094
AEILSEMRA	9	Unmodified	_AEILSEMRA_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	HCT116MG_D190212_S4	4	510.26318359375	2	510.263142	1018.51173	0.22339	0.00011399	-0.12301	-6.277E-05	0.10037	5.1216E-05	510.26304472365564	40.81	0.2358	40.432	40.286	40.522	-0.37828					7	4	2	0	0	0	0.032914	1	14978	14978		83.429	20.856	1	4007600			1407	2288	705	712	1413	1413					0.0032150632887351094
AEIMGKLLA	9	Unmodified	_AEIMGKLLA_					0	0	0		ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2752685546875	2	473.275521	944.536489	0.2131	0.00010085	-0.054606	-2.5844E-05	0.15849	7.501E-05	473.27543846354524	46.35	0.41196	46.239	45.957	46.369	-0.11121					11	7	2	0	0	0	0.071914	1	17654	17654		63.961	29.858	1	42347000			1408	7288	706	713	1414	1414					0.06200186202272562
AEIMGKLLA	9	Unmodified	_AEIMGKLLA_					0	0	0		ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2754211425781	2	473.275521	944.536489	0.4515	0.00021368	-0.27425	-0.0001298	0.17725	8.3886E-05	473.2753349820304	46.674	0.24044	46.302	46.14	46.38	-0.37134					7	4	2	0	0	0	0.14362	1	17243	17243		49.554	17.249	1	8537800			1409	7288	706	713	1415	1415					0.06200186202272562
AEIMGKLLA	9	Unmodified	_AEIMGKLLA_					0	0	0		ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	473.275521	944.536489	0.39244	0.00018573	-0.47282	-0.00022377	-0.08038	-3.8042E-05	473.2752721666496	46.589	0.3648	46.276	46.126	46.491	-0.313	0.0033413	-6.6241E-05	NaN	63.961	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13261000			1410	7288	706	713							0.06200186202272562
AEINATMSV	9	Unmodified	_AEINATMSV_					0	0	0		ENST00000506047.1_1_4:77936059-77941836:+|nuORF;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENST00000506047.1_1_4:77936059-77941836:+|nuORF	ENST00000506047.1_1_4:77936059-77941836:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	935.449462890625	1	935.450259	934.442982	0.55452	0.00051873	-0.21524	-0.00020135	0.33928	0.00031738	935.4500222609745	39.683	0.51224	39.605	39.428	39.94	-0.077835					13	9	2	0	0	0	0.01405	1	14953	14953		103.35	28.425	1	58995000			1411	3584	707	714	1416	1416					-0.02686157970822478
AEINGTMNA	9	Unmodified	_AEINGTMNA_					0	0	0		nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	MULTI-MSMS	HCT116MG_D190212_S2	2	920.4148559570312	1	920.414208	919.406931	0.81294	0.00074824	-0.0065671	-6.0445E-06	0.80637	0.0007422	920.4139203760712	28.25	0.20772	27.92	27.822	28.029	-0.32987					6	3	2	0	0	0	0.061422	1	10321	10321		69.105	19.172	1	10296000			1412	2880	708	715	1417	1417					-0.05599615147696113
AEINGTMNA	9	Unmodified	_AEINGTMNA_					0	0	0		nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	MULTI-MSMS	HCT116MG_D190212_S3	3	920.414794921875	1	920.414208	919.406931	0.70061	0.00064485	-0.08698	-8.0058E-05	0.61363	0.0005648	920.4142846346233	28.252	0.31338	28.046	27.916	28.229	-0.20593					13	5	3	0	0	0	0.069315	1	10224	10224		65.235	10.461	1	14291000			1413	2880	708	715	1418	1418					-0.05599615147696113
AEINGTMNA	9	Unmodified	_AEINGTMNA_					0	0	0		nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	MULTI-MSMS	HCT116MG_D190212_S4	4	920.4139404296875	1	920.414208	919.406931	0.70745	0.00065115	-0.12093	-0.00011131	0.58652	0.00053984	920.4142817620482	28.407	0.31237	28.076	27.856	28.168	-0.33138					8	5	2	0	0	0	0.11023	1	10206	10206		56.177	1.4035	1	2915800			1414	2880	708	715	1419	1419					-0.05599615147696113
AEINHSFTP	9	Unmodified	_AEINHSFTP_					0	0	0		KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant;ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF;KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	508.24639892578125	2	508.245806	1014.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.12	1	32.835	32.335	33.335	-0.28511								0	0	0	0.30238	1	12155	12155		39.95	3.8227	1				1415	9260	709	716	1420	1420					-0.029599934875591316
AEINKSDHVA	10	Unmodified	_AEINKSDHVA_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2752685546875	2	542.275095	1082.53564	0.40434	0.00021926	-0.08551	-4.637E-05	0.31883	0.00017289	542.2749663248717	18.084	0.26087	17.728	17.597	17.858	-0.35647					8	4	2	0	0	0	0.14637	1	6216	6216		64.927	21.154	1	17286000			1416	4129	710	717	1421	1421					-0.0023293691308481357
AEINYNNP	8	Unmodified	_AEINYNNP_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MSMS	HCT116MG_D190212_S3	3	467.7151184082031	2	467.716882	933.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.548	1	18.625	18.125	19.125	0.076334								0	0	0	0.55681	1	6306	6306		39.957	0.0076237	1				1417	5231	711	718	1422	1422					-0.05016255413011095
AEIPAGPGREP	11	Unmodified	_AEIPAGPGREP_					0	0	0		ENST00000486701.1_1_2:27663271-27663376:+|nuORF;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000486701.1_1_2:27663271-27663376:+|nuORF	ENST00000486701.1_1_2:27663271-27663376:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	547.2852783203125	2	547.285463	1092.55637	0.51042	0.00027935	-0.098856	-5.4103E-05	0.41156	0.00022524	547.2853459851476	27.483	0.5703	27.483	27.282	27.852	0					23	10	3	0	0	0	0.22509	1	9971	9971		72.59	36.083	1	18411000			1418	2453	712	719	1423	1423					0.01379653466574382
AEIPAGPGREP	11	Unmodified	_AEIPAGPGREP_					0	0	0		ENST00000486701.1_1_2:27663271-27663376:+|nuORF;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000486701.1_1_2:27663271-27663376:+|nuORF	ENST00000486701.1_1_2:27663271-27663376:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	547.2855224609375	2	547.285463	1092.55637	0.45071	0.00024666	0.05527	3.0249E-05	0.50598	0.00027691	547.2854441483719	27.845	0.82602	27.503	27.243	28.069	-0.34201					41	15	4	0	0	0	0.025005	1	10112	10112		128.87	68.796	1	133180000			1419	2453	712	719	1424	1424					0.01379653466574382
AEIPAGPGREP	11	Unmodified	_AEIPAGPGREP_					0	0	0		ENST00000486701.1_1_2:27663271-27663376:+|nuORF;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000486701.1_1_2:27663271-27663376:+|nuORF	ENST00000486701.1_1_2:27663271-27663376:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	547.2853393554688	2	547.285463	1092.55637	0.48363	0.00026468	0.06032	3.3012E-05	0.54395	0.00029769	547.285416207421	27.814	0.8334	27.626	27.361	28.194	-0.18847					46	15	4	0	0	0	0.033687	3	10017	10017;10089;10245		109.15	65.164	1	48939000			1420	2453	712	719	1425;1426;1427	1425					0.01379653466574382
AEIPAGPGREP	11	Unmodified	_AEIPAGPGREP_					0	0	0		ENST00000486701.1_1_2:27663271-27663376:+|nuORF;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000486701.1_1_2:27663271-27663376:+|nuORF	ENST00000486701.1_1_2:27663271-27663376:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	547.2857666015625	2	547.285463	1092.55637	0.5295	0.00028979	0.066195	3.6228E-05	0.59569	0.00032601	547.2854389712502	28.005	0.83179	27.684	27.45	28.282	-0.32157					28	15	2	0	0	0	0.077066	1	10029	10029		93.448	47.749	1	17465000			1421	2453	712	719	1428	1428					0.01379653466574382
AEIPFEKKP	9	Unmodified	_AEIPFEKKP_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7974243164062	2	529.797675	1057.5808	0.50807	0.00026918	-0.081272	-4.3058E-05	0.4268	0.00022612	529.7975159825293	31.215	0.36197	30.948	30.663	31.025	-0.26704					13	6	3	0	0	0	0.14072	1	11493	11493		61.09	22.475	1	24855000			1422	1618	713	720	1429	1429					0.05430913620079991
AEIPFEKKP	9	Unmodified	_AEIPFEKKP_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S2	2	353.5341796875	3	353.534209	1057.5808	-0.059651	-2.1089E-05	-0.083836	-2.9639E-05	-0.14349	-5.0728E-05	353.534239661323	31.176	0.2574	30.909	30.768	31.025	-0.26704					10	4	3	0	0	0	0.19011	1	11508	11508		42.312	28.094	1	19740000			1423	1618	713	720	1430	1430					0.05430913620079991
AEIPFEKKP	9	Unmodified	_AEIPFEKKP_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MSMS	HCT116MG_D190212_S3	3	353.5340881347656	3	353.534209	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.347	1	31.079	30.579	31.579	-0.26774								0	0	0	0.64822	1	11449	11449		21.59	9.3495	1				1424	1618	713	720	1431	1431					0.05430913620079991
AEIPFEKKP	9	Unmodified	_AEIPFEKKP_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant;CDC5L|p.Y225Mfs*18|1|0.1|ENSG00000096401|chr6:44403938-44403938|T/-|frameshift_variant;CDC5L|p.K271Nfs*4|1|0.18|ENSG00000096401|chr6:44406376-44406377|-/C|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MATCH	HCT116MG_D190212_S1	1		2	529.797675	1057.5808	0.48306	0.00025592	-0.69096	-0.00036607	-0.2079	-0.00011015	529.7971771142742	30.893	0.2081	30.893	30.763	30.971	0	-0.069584	-0.00058413	NaN	61.09	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2831100			1425	1618	713	720							0.05430913620079991
AEIPKIFPSG	10	Unmodified	_AEIPKIFPSG_					0	0	0			REV__DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant	REV__DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	529.7977905273438	2	529.797675	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.371	1	31.101	30.601	31.601	-0.27028								0	0	0	0.83749	1	11458	11458		33.445	17.598	1		+		1426	10382	714	721	1432	1432					0.054309136201027286
AEIPKIFPSG	10	Unmodified	_AEIPKIFPSG_					0	0	0			REV__DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant	REV__DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	529.7977905273438	2	529.797675	1057.5808	0.38007	0.00020136	-0.037583	-1.9911E-05	0.34249	0.00018145	529.7975760223652	31.309	0.26118	31.048	30.865	31.126	-0.26071					6	4	2	0	0	0	0.27368	1	11458	11458		33.445	14.188	1	5312000	+		1427	10382	714	721	1433	1433					0.054309136201027286
AEIQGVIDA	9	Unmodified	_AEIQGVIDA_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2	ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	HCT116MG_D190212_S1	1	915.47802734375	1	915.478188	914.470912	0.61549	0.00056347	-0.44218	-0.00040481	0.17331	0.00015867	915.4778469621052	40.409	0.31094	40.409	40.176	40.487	0					7	5	2	0	0	0	0.026272	1	15192	15192		90.135	21.03	1	36794000			1428	5798;152	715	722	1434	1434					0.010254882809022092
AEIQGVIDA	9	Unmodified	_AEIQGVIDA_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2	ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	HCT116MG_D190212_S2	2	915.4789428710938	1	915.478188	914.470912	0.85298	0.00078088	0.10203	9.3411E-05	0.95501	0.00087429	915.4781777416337	40.511	0.61977	40.442	40.209	40.829	-0.069626					27	11	4	0	0	0	0.026272	1	15259	15259		90.135	30.061	1	352470000			1429	5798;152	715	722	1435	1435					0.010254882809022092
AEIQGVIDA	9	Unmodified	_AEIQGVIDA_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2	ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	HCT116MG_D190212_S3	3	915.4788818359375	1	915.478188	914.470912	0.86096	0.00078819	-0.069609	-6.3726E-05	0.79135	0.00072446	915.4780131410506	40.699	0.57296	40.397	40.163	40.736	-0.30161					26	10	4	0	0	0	0.016412	1	15097	15097		100.09	21.363	1	71805000			1430	5798;152	715	722	1436	1436					0.010254882809022092
AEIQGVIDA	9	Unmodified	_AEIQGVIDA_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2	ENSG00000185009|ENST00000355264|AP3M1;nc|ENSG00000070718|P53677-2|AP3M2	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	HCT116MG_D190212_S4	4	915.4788818359375	1	915.478188	914.470912	0.76231	0.00069788	0.10832	9.9164E-05	0.87063	0.00079704	915.478210279392	40.745	0.49251	40.367	40.182	40.675	-0.37828					22	9	4	0	0	0	0.037825	1	14941	14941		80.676	20.602	1	57463000			1431	5798;152	715	722	1437	1437					0.010254882809022092
AEIQPQTQV	9	Unmodified	_AEIQPQTQV_					0	0	0		nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;PTK7|p.P254Rfs*35|1|0.33|ENSG00000112655|chr6:43130606-43130606|C/-|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant	nc|ENSG00000112655|Q13308-4|PTK7	nc|ENSG00000112655|Q13308-4|PTK7	MULTI-MSMS	HCT116MG_D190212_S3	3	507.26690673828125	2	507.266739	1012.51892	0.40355	0.00020471	-0.2432	-0.00012337	0.16035	8.134E-05	507.2664388090265	30.031	0.31612	29.795	29.61	29.926	-0.23655					9	5	2	0	0	0	0.082877	1	10958	10958		61.602	23.426	1	9871000			1432	9429	716	723	1438	1438					0.013165622009637445
AEIQPQTQV	9	Unmodified	_AEIQPQTQV_					0	0	0		nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;PTK7|p.P254Rfs*35|1|0.33|ENSG00000112655|chr6:43130606-43130606|C/-|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant	nc|ENSG00000112655|Q13308-4|PTK7	nc|ENSG00000112655|Q13308-4|PTK7	MULTI-MSMS	HCT116MG_D190212_S4	4	507.26611328125	2	507.266739	1012.51892	0.14143	7.1743E-05	-0.10047	-5.0963E-05	0.040965	2.078E-05	507.26645746006733	30.136	0.31203	29.779	29.597	29.909	-0.3571					9	5	2	0	0	0	0.1935	1	10942	10942		41.956	13.461	1	3603100			1433	9429	716	723	1439	1439					0.013165622009637445
AEIRAINEA	9	Unmodified	_AEIRAINEA_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7670593261719	2	493.766906	985.519259	0.28974	0.00014306	0.11592	5.7236E-05	0.40565	0.0002003	493.7668155814244	28.54	0.2575	28.21	28.029	28.287	-0.32987					9	4	3	0	0	0	0.048237	1	10417	10417		75.571	2.6027	1	36081000			1434	6114	717	724	1440	1440					0.025919819207956607
AEIRAINEA	9	Unmodified	_AEIRAINEA_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MSMS	HCT116MG_D190212_S3	3	493.7669372558594	2	493.766906	985.519259	0.31356	0.00015482	0.13073	6.455E-05	0.44429	0.00021937	493.7669346265643	28.462	0.36469	28.256	28.125	28.489	-0.20593					17	6	4	0	0	0	0.022505	1	10304	10304		93.938	11.409	1	30043000			1435	6114	717	724	1441	1441					0.025919819207956607
AEIRAINEA	9	Unmodified	_AEIRAINEA_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MSMS	HCT116MG_D190212_S4	4	493.76690673828125	2	493.766906	985.519259	0.21739	0.00010734	-0.033334	-1.6459E-05	0.18405	9.0879E-05	493.7668068029721	28.634	0.31128	28.302	28.167	28.479	-0.33225					12	5	3	0	0	0	0.031831	1	10310	10310		84.522	12.6	1	12560000			1436	6114	717	724	1442	1442					0.025919819207956607
AEIRTLHFAA	10	Unmodified	_AEIRTLHFAA_					0	0	0		ENST00000504405.5_1_1:179112070-179112142:-|nuORF	ENST00000504405.5_1_1:179112070-179112142:-|nuORF	ENST00000504405.5_1_1:179112070-179112142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	565.3278198242188	2	564.811648	1127.60874	0.37164	0.00020991	0.30071	0.00016985	0.67235	0.00037975	565.3133802623568	38.402	0.15557	38.101	37.989	38.144	-0.30137					4	2	2	0	0	0	0.75557	1	14205	14205		15.739	5.5881	1	2913800			1437	8442	718	725	1443	1443					0.050042366001889604
AEISAFEL	8	Unmodified	_AEISAFEL_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	879.44677734375	1	879.445825	878.438549	0.88085	0.00077466	0.36376	0.00031991	1.2446	0.0010946	879.4458616255039	55.643	0.15506	55.457	55.38	55.535	-0.18565					4	2	2	0	0	0	0.23195	1	21479	21479		67.344	6.9543	1	36261000			1438	4567	719	726	1444	1444					-0.005532991220889016
AEISAMLKA	9	Unmodified	_AEISAMLKA_					0	0	0		ENSG00000104356|ENST00000401707|POP1;POP1|p.I399Lfs*23|2|0.09|ENSG00000104356|chr8:98136659-98136659|A/-|frameshift_variant;POP1|p.T752Lfs*12|3|0.32|ENSG00000104356|chr8:98156240-98156240|A/-|frameshift_variant	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MSMS	HCT116MG_D190212_S3	3	467.25714111328125	2	467.257328	932.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.666	1	41.363	40.863	41.863	-0.30257								0	0	0	0.050056	1	15499	15499		70.332	20.399	1				1439	1926	720	727	1445	1445					0.031153093055309
AEISDRYGAP	10	Unmodified	_AEISDRYGAP_					0	0	0		ENSG00000170788|ENST00000372202|DYDC1;nc|ENSG00000170788|Q8WWB3-2|DYDC1	ENSG00000170788|ENST00000372202|DYDC1	ENSG00000170788|ENST00000372202|DYDC1	MSMS	HCT116MG_D190212_S1	1	539.7633666992188	2	539.76182	1077.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.064	1	23.064	22.564	23.564	0								0	0	0	0.93854	1	8196	8196		7.2892	2.96	1				1440	5155	721	728	1446	1446					-0.02656625804434043
AEISHHISS	9	Unmodified	_AEISHHISS_					0	0	0		ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	490.7434387207031	2	490.743431	979.472308	0.43878	0.00021533	-0.18774	-9.2131E-05	0.25104	0.0001232	490.7432807566145	17.959	0.31283	17.959	17.776	18.089	0					13	5	4	0	0	0	0.0035731	1	6148	6148		174.73	106.65	1	45798000			1441	5147	722	729	1447	1447					-0.01824877630338051
AEISHHISS	9	Unmodified	_AEISHHISS_					0	0	0		ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	980.4803466796875	1	980.479585	979.472308	0.23051	0.00022601	0.43649	0.00042797	0.667	0.00065398	980.4798997308943	18.604	0.31189	18.241	18.061	18.373	-0.36325					10	5	3	0	0	0	0.0057285	1	6412	6412		131.27	76.494	1	26401000			1442	5147	722	729	1448	1448					-0.01824877630338051
AEISHHISS	9	Unmodified	_AEISHHISS_					0	0	0		ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	980.4800415039062	1	980.479585	979.472308	0.42898	0.00042061	-0.056682	-5.5575E-05	0.3723	0.00036503	980.4791824370077	17.426	0.20808	17.508	17.377	17.585	0.081358					5	3	2	0	0	0	0.012168	1	5883	5883		108	53.223	1	2240500			1443	5147	722	729	1449	1449					-0.01824877630338051
AEISHHISS	9	Unmodified	_AEISHHISS_					0	0	0		ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	490.7434997558594	2	490.743431	979.472308	-0.16258	-7.9784E-05	0.28426	0.0001395	0.12168	5.9715E-05	490.7435589781606	17.785	0.51972	17.61	17.48	18	-0.17501					15	9	3	0	0	0	0.0057285	1	5946	5946		131.27	81.335	1	11123000			1444	5147	722	729	1450	1450					-0.01824877630338051
AEISVPFRV	9	Unmodified	_AEISVPFRV_					0	0	0		ENST00000479435.1_1_13:108922691-108939174:+|nuORF;ENST00000430559.5_1_13:108922691-108955654:+|nuORF	ENST00000479435.1_1_13:108922691-108939174:+|nuORF	ENST00000479435.1_1_13:108922691-108939174:+|nuORF	MSMS	HCT116MG_D190212_S2	2	509.2879638671875	2	509.290017	1016.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.404	1	24.024	23.524	24.524	-0.38003								0	0	0	0.46109	1	8743	8743		30.637	3.4133	1				1445	7848	723	730	1451	1451					0.057860468229023354
AEIVKKVM	8	Unmodified	_AEIVKKVM_					0	0	0		tr|U7T5L9|U7T5L9_FUSNUHTHmerR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00102PE=4SV=1	tr|U7T5L9|U7T5L9_FUSNUHTHmerR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00102PE=4SV=1	tr|U7T5L9|U7T5L9_FUSNUHTHmerR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00102PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	459.2801513671875	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.518	1	37.414	36.914	37.914	-0.10318								0	0	0	0.8837	1	14065	14065		9.3474	3.587	1				1446	18632	724	731	1452	1452					0.07996490064874706
AEIYEQHVT	9	Unmodified	_AEIYEQHVT_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;TRIM37|p.P935Rfs*15|1|0.29|ENSG00000108395|chr17:59001606-59001606|G/-|frameshift_variant;ENSG00000108395|ENST00000262294|TRIM37;TRIM37|p.Q162Rfs*15|1|0.07|ENSG00000108395|chr17:59081105-59081106|GA/-|frameshift_variant	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MSMS	HCT116MG_D190212_S3	3	545.2642822265625	2	545.264196	1088.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.165	1	27.959	27.459	28.459	-0.20593								0	0	0	0.32081	1	10181	10181		38.615	12.347	1				1447	2158	725	732	1453	1453					-0.026877416616798655
AEKAEFYQI	9	Unmodified	_AEKAEFYQI_					0	0	0		ENST00000492449.5_1_3:184603882-184769810:+|nuORF;nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	550.3247680664062	2	549.776939	1097.53933	0.34131	0.00018765	-0.038939	-2.1408E-05	0.30237	0.00016624	549.7768912856726	42.664	0.20482	42.664	42.538	42.743	0					5	3	2	0	0	0	0.22899	1	16061	16061		13.042	11.39	1	7025800			1448	4304	726	733	1454	1454					-0.005542671392504417
AEKAEFYQI	9	Unmodified	_AEKAEFYQI_					0	0	0		ENST00000492449.5_1_3:184603882-184769810:+|nuORF;nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	549.77783203125	2	549.776939	1097.53933	0.62	0.00034086	0.24732	0.00013597	0.86732	0.00047683	549.7771360629517	42.559	0.57089	42.489	42.119	42.689	-0.069984					14	6	3	0	0	0	0.034046	1	16122	16122		82.529	38.671	1	44870000			1449	4304	726	733	1455	1455					-0.005542671392504417
AEKAEFYQI	9	Unmodified	_AEKAEFYQI_					0	0	0		ENST00000492449.5_1_3:184603882-184769810:+|nuORF;nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	ENST00000492449.5_1_3:184603882-184769810:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	549.7772216796875	2	549.776939	1097.53933	0.49665	0.00027305	-0.42581	-0.0002341	0.070848	3.8951E-05	549.7769521414531	42.89	0.2596	42.586	42.404	42.663	-0.30472					14	4	4	0	0	0	0.1935	1	16015	16015		41.956	11.319	1	19292000			1450	4304	726	733	1456	1456					-0.005542671392504417
AEKAFQEGI	9	Unmodified	_AEKAFQEGI_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	496.755859375	2	496.756007	991.497461	0.35558	0.00017664	0.20355	0.00010112	0.55913	0.00027775	496.75569635971976	33.822	0.31301	33.822	33.659	33.972	0					10	5	3	0	0	0	0.0050238	1	12547	12547		137.42	59.274	1	7079400			1451	253	727	734	1457	1457					0.001371771722460835
AEKAFQEGI	9	Unmodified	_AEKAFQEGI_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	496.75555419921875	2	496.756007	991.497461	0.28555	0.00014185	0.061306	3.0454E-05	0.34685	0.0001723	496.75590585333646	34.013	0.25891	33.838	33.709	33.967	-0.17512					8	4	2	0	0	0	0.0035631	1	12667	12667		173.69	69.938	1	30976000			1452	253	727	734	1458	1458					0.001371771722460835
AEKAFQEGI	9	Unmodified	_AEKAFQEGI_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	496.7556457519531	2	496.756007	991.497461	0.3665	0.00018206	-0.19025	-9.451E-05	0.17624	8.7551E-05	496.7559055430058	34.227	0.26019	33.933	33.767	34.027	-0.2942					7	4	2	0	0	0	0.0063854	1	12607	12607		125.53	62.956	1	4940100			1453	253	727	734	1459	1459					0.001371771722460835
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	425.7368469238281	2	425.737086	849.459619	-0.10925	-4.6511E-05	0.1939	8.2552E-05	0.084656	3.6041E-05	425.7370728640407	36.499	0.31399	36.499	36.365	36.679	0					13	5	3	0	0	0	0.068735	1	13612	13612		103.35	21.74	1	38437000			1454	9	728	735	1460	1460					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	850.4664916992188	1	850.466895	849.459619	0.65634	0.0005582	-0.40752	-0.00034658	0.24882	0.00021162	850.4664128025073	36.496	0.20974	36.496	36.365	36.574	0					5	3	2	0	0	0	0.1893	1	13632	13632		75.761	20.987	1	6681300			1455	9	728	735	1461	1461					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	425.737060546875	2	425.737086	849.459619	0.1616	6.8799E-05	0.1501	6.3905E-05	0.3117	0.0001327	425.7370634283642	36.588	0.36188	36.473	36.292	36.653	-0.11478					15	6	3	0	0	0	0.068735	1	13687	13687		103.35	32.22	1	104790000			1456	9	728	735	1462	1462					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	850.4652709960938	1	850.466895	849.459619	0.82509	0.00070171	-0.47315	-0.0004024	0.35194	0.00029931	850.4661936534334	36.588	0.25853	36.473	36.343	36.602	-0.11478					7	4	2	0	0	0	0.079387	1	13695	13695		99.755	25.333	1	40010000			1457	9	728	735	1463	1463					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	425.73699951171875	2	425.737086	849.459619	0.051604	2.197E-05	0.17394	7.4054E-05	0.22555	9.6023E-05	425.7370222645147	36.784	0.41595	36.483	36.301	36.717	-0.30113					15	7	3	0	0	0	0.068735	1	13605	13605		103.35	21.74	1	23134000			1458	9	728	735	1464	1464					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	850.4671630859375	1	850.466895	849.459619	0.65257	0.00055499	0.84198	0.00071607	1.4945	0.0012711	850.467497283482	36.784	0.20778	36.483	36.353	36.561	-0.30113					5	3	2	0	0	0	0.16987	1	13615	13615		79.596	15.36	1	4951900			1459	9	728	735	1465	1465					0.028867109774296296
AEKAFVSV	8	Unmodified	_AEKAFVSV_					0	0	0		ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	425.7369384765625	2	425.737086	849.459619	0.16319	6.9476E-05	0.17215	7.329E-05	0.33534	0.00014277	425.73697964418733	36.937	0.25578	36.552	36.383	36.639	-0.38486					7	4	2	0	0	0	0.068735	1	13533	13533		103.35	35.273	1	7225500			1460	9	728	735	1466	1466					0.028867109774296296
AEKAGMSAEQA	11	Unmodified	_AEKAGMSAEQA_					0	0	0		ENST00000473649.1_1_7:142961996-142965927:+|nuORF;nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	546.7523803710938	2	546.753138	1091.49172	0.2854	0.00015605	-0.9163	-0.00050099	-0.6309	-0.00034494	546.7525684002422	17.999	0.20781	18.075	17.945	18.153	0.076334					6	3	2	0	0	0	0.51928	1	6103	6103		44.392	9.9902	1	5612800			1461	6147	729	736	1467	1467					-0.05036289401732574
AEKAGMSAEQA	11	Unmodified	_AEKAGMSAEQA_					0	0	0		ENST00000473649.1_1_7:142961996-142965927:+|nuORF;nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	546.753138	1091.49172	0.41377	0.00022623	0.21186	0.00011584	0.62563	0.00034206	546.7538836909085	18.252	0.20537	18.077	18	18.205	-0.17501	0.0011632	0.0011641	NaN	44.392	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1282600			1462	6147	729	736							-0.05036289401732574
AEKAGTFGP	9	Unmodified	_AEKAGTFGP_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S1	1	439.224365234375	2	439.224342	876.434132	0.016717	7.3423E-06	0.12746	5.5983E-05	0.14417	6.3325E-05	439.22431702465735	26.944	0.57281	26.944	26.605	27.178	0					18	10	2	0	0	0	0.49914	1	9699	9699		16.942	1.1741	1	9177900			1463	6093	730	737	1468	1468					-0.009027635450024718
AEKAGTFGP	9	Unmodified	_AEKAGTFGP_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S2	2	439.2247619628906	2	439.224342	876.434132	0.30506	0.00013399	0.089528	3.9323E-05	0.39459	0.00017331	439.2242813002246	27.404	0.83342	27.062	26.565	27.398	-0.34201					43	15	3	0	0	0	0.037825	1	9842	9842		80.676	14.219	1	49896000			1464	6093	730	737	1469	1469					-0.009027635450024718
AEKAGTFGP	9	Unmodified	_AEKAGTFGP_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S2	2	877.4418334960938	1	877.441409	876.434132	1.0746	0.00094291	-0.24451	-0.00021454	0.83011	0.00072837	877.4412483326521	27.452	0.62547	27.11	26.67	27.295	-0.34201					18	11	2	0	0	0	0.0068427	1	9924	9924		121.53	52.429	1	11505000			1465	6093	730	737	1470	1470					-0.009027635450024718
AEKAGTFGP	9	Unmodified	_AEKAGTFGP_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MSMS	HCT116MG_D190212_S2	2	439.2244873046875	2	439.224342	876.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.754	1	27.412	26.912	27.912	-0.34201								0	0	0	0.1107	1	10095	10095		53.833	11.738	1				1466	6093	730	737	1471	1471					-0.009027635450024718
AEKAGTFGP	9	Unmodified	_AEKAGTFGP_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S3	3	439.2243347167969	2	439.224342	876.434132	0.20969	9.21E-05	0.029738	1.3062E-05	0.23943	0.00010516	439.22423152774894	27.174	1.1452	27.005	26.287	27.432	-0.16933					51	21	3	0	0	0	0.014023	2	9839	9610;9839		103.42	42.062	1	41333000			1467	6093	730	737	1472;1473	1473					-0.009027635450024718
AEKAGTFGP	9	Unmodified	_AEKAGTFGP_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S3	3	877.4405517578125	1	877.441409	876.434132	0.83419	0.00073196	-0.20063	-0.00017604	0.63356	0.00055592	877.4412976356213	27.091	0.83312	26.921	26.443	27.276	-0.16933					22	15	2	0	0	0	0.0068427	1	9732	9732		121.53	48.566	1	5393000			1468	6093	730	737	1474	1474					-0.009027635450024718
AEKAGTFGP	9	Unmodified	_AEKAGTFGP_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S4	4	439.2242736816406	2	439.224342	876.434132	0.32242	0.00014161	-0.02143	-9.4128E-06	0.30099	0.0001322	439.2241904814382	27.411	0.87347	27.096	26.583	27.456	-0.31526					42	16	3	0	0	0	0.037825	2	9910	9688;9910		80.676	14.219	1	15227000			1469	6093	730	737	1475;1476	1476					-0.009027635450024718
AEKAGTFGP	9	Unmodified	_AEKAGTFGP_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S4	4	877.4420776367188	1	877.441409	876.434132	0.88079	0.00077284	0.028579	2.5076E-05	0.90937	0.00079792	877.4414484973322	27.288	0.57148	26.977	26.69	27.262	-0.3114					16	10	2	0	0	0	0.016412	1	9793	9793		100.09	42.369	1	1784700			1470	6093	730	737	1477	1477					-0.009027635450024718
AEKALGKAA	9	Unmodified	_AEKALGKAA_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	HCT116MG_D190212_S1	1	429.7557678222656	2	429.75581	857.497067	-0.0059354	-2.5508E-06	-0.039017	-1.6768E-05	-0.044953	-1.9319E-05	429.75572102514974	16.082	0.31269	16.082	15.952	16.265	0					11	5	3	0	0	0	0.048237	1	5410	5410		75.571	7.7324	1	14869000			1471	943	731	738	1478	1478					0.06261802243022885
AEKALGKAA	9	Unmodified	_AEKALGKAA_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	HCT116MG_D190212_S2	2	430.2568359375	2	429.75581	857.497067	-0.09067	-3.8966E-05	-0.033619	-1.4448E-05	-0.12429	-5.3414E-05	429.75576623326947	12.402	0.16238	12.105	12.013	12.176	-0.29721					14	8	2	0	0	0	0.63131	1	4059	4059		9.3831	0.78985	1	589040			1472	943	731	738	1479	1479					0.06261802243022885
AEKALGKAA	9	Unmodified	_AEKALGKAA_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	HCT116MG_D190212_S2	2	430.2577819824219	2	429.75581	857.497067	0.004676	2.0096E-06	0.066676	2.8654E-05	0.071352	3.0664E-05	429.7557375445904	16.468	0.36459	16.126	15.996	16.36	-0.34183					13	6	3	0	0	0	0.0064416	1	5547	5547		125.04	18.098	1	38897000			1473	943	731	738	1480	1480					0.06261802243022885
AEKALGKAA	9	Unmodified	_AEKALGKAA_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MSMS	HCT116MG_D190212_S2	2	858.5048217773438	1	858.504343	857.497067	0.70179	0.00060249	-0.068364	-5.8691E-05	0.63343	0.0005438	858.5042789147882	16.468	0.15622	16.126	16.048	16.204	-0.34183					4	2	2	0	0	0	0.01386	1	5570	5570		103.82	21.294	1	3510200			1474	943	731	738	1481	1481					0.06261802243022885
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;nc|ENSG00000183785|Q9NY65-2|TUBA8;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;TUBA1A|p.I276V|1|0.05|ENSG00000167552|chr12:49185540-49185540|T/C|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S1	1	544.772216796875	2	544.772188	1087.52982	0.49378	0.000269	-0.032988	-1.7971E-05	0.4608	0.00025103	544.772136876128	22.825	0.31236	22.825	22.689	23.001	0					13	5	3	0	0	0	0.0034669	1	8101	8101		163.69	87.926	1	54962000			1475	1325	732	739	1482	1482					-0.010440354247748473
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;nc|ENSG00000183785|Q9NY65-2|TUBA8;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;TUBA1A|p.I276V|1|0.05|ENSG00000167552|chr12:49185540-49185540|T/C|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S2	2	545.274658203125	2	544.772188	1087.52982	0.43	0.00023425	-0.015946	-8.6869E-06	0.41406	0.00022557	544.772049966693	23.472	0.41452	23.088	22.935	23.35	-0.3843					21	7	4	0	0	0	0.0028865	1	8372	8372		182.24	110.31	1	135650000			1476	1325	732	739	1483	1483					-0.010440354247748473
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;nc|ENSG00000183785|Q9NY65-2|TUBA8;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;TUBA1A|p.I276V|1|0.05|ENSG00000167552|chr12:49185540-49185540|T/C|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S3	3	544.7726440429688	2	544.772188	1087.52982	0.37594	0.0002048	-0.47325	-0.00025781	-0.097311	-5.3012E-05	544.77189594775	22.661	0.20791	22.642	22.543	22.751	-0.018871					5	3	2	0	0	0	0.20983	1	7994	7994		40.239	2.0636	1	1887700			1477	1325	732	739	1484	1484					-0.010440354247748473
AEKDDDLKRTA	11	Unmodified	_AEKDDDLKRTA_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;ENST00000498250.1_1_3:37369266-37370614:+|nuORF	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	HCT116MG_D190212_S2	2	631.3231201171875	2	631.322773	1260.63099	0.41889	0.00026446	0.15239	9.621E-05	0.57129	0.00036067	631.3228091085444	16.207	0.20908	15.872	15.741	15.951	-0.33451					8	3	3	0	0	0	0.26018	1	5460	5460		68.563	33.631	1	9626600			1478	3876	733	740	1485	1485					0.011103714872888304
AEKDDDLKRTA	11	Unmodified	_AEKDDDLKRTA_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;ENST00000498250.1_1_3:37369266-37370614:+|nuORF	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	HCT116MG_D190212_S2	2	421.2176208496094	3	421.217608	1260.63099	-0.011485	-4.8376E-06	-0.26542	-0.0001118	-0.27691	-0.00011664	421.2175365253643	16.207	0.20908	15.872	15.741	15.951	-0.33451					7	3	3	0	0	0	0.64583	1	5464	5464		30.572	16.957	1	5287400			1479	3876	733	740	1486	1486					0.011103714872888304
AEKDFWELA	9	Unmodified	_AEKDFWELA_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S2	2	554.769287109375	2	554.769114	1107.52368	0.20513	0.0001138	0.21218	0.00011771	0.41731	0.00023151	554.769136653456	53.696	0.31017	53.506	53.325	53.636	-0.1894					10	5	2	0	0	0	0.045679	2	20656	20656;20674		76.825	38.851	1	78195000			1480	6591	734	741	1487;1488	1487					-0.025785536562807465
AEKDFWELA	9	Unmodified	_AEKDFWELA_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S3	3	554.7694091796875	2	554.769114	1107.52368	0.43695	0.00024241	0.51557	0.00028602	0.95253	0.00052843	554.7692243223341	53.829	0.31248	53.529	53.352	53.665	-0.29946					13	5	4	0	0	0	0.051033	1	20386	20386		74.2	34.25	1	14428000			1481	6591	734	741	1489	1489					-0.025785536562807465
AEKDFWELA	9	Unmodified	_AEKDFWELA_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S4	4	554.7692260742188	2	554.769114	1107.52368	0.46918	0.00026029	-1.1198	-0.00062123	-0.65063	-0.00036095	554.7684783135651	53.834	0.26	53.504	53.353	53.613	-0.32923					7	4	2	0	0	0	0.10244	1	20128	20128		57.722	33.701	1	3493600			1482	6591	734	741	1490	1490					-0.025785536562807465
AEKDGVKVP	9	Unmodified	_AEKDGVKVP_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	MULTI-MSMS	HCT116MG_D190212_S1	1	471.7663879394531	2	471.766374	941.518196	0.25351	0.0001196	-0.45281	-0.00021362	-0.1993	-9.4022E-05	471.7662021681644	23.774	0.41813	23.774	23.679	24.098	0					13	7	2	0	0	0	0.11363	1	8502	8502		55.503	1.6699	1	5861400			1483	2113	735	742	1491	1491					0.04509767551905952
AEKDGVKVP	9	Unmodified	_AEKDGVKVP_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	MULTI-MSMS	HCT116MG_D190212_S2	2	471.7664489746094	2	471.766374	941.518196	0.38151	0.00017999	-0.052823	-2.492E-05	0.32869	0.00015507	471.76625274705145	24.333	0.67736	23.953	23.822	24.499	-0.38003					27	12	3	0	0	0	0.048237	1	8727	8727		75.571	1.3709	1	59198000			1484	2113	735	742	1492	1492					0.04509767551905952
AEKDGVKVP	9	Unmodified	_AEKDGVKVP_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	MULTI-MSMS	HCT116MG_D190212_S3	3	471.7663269042969	2	471.766374	941.518196	0.14927	7.0423E-05	0.059621	2.8127E-05	0.2089	9.855E-05	471.7663625046416	23.759	0.7292	23.697	23.53	24.259	-0.061447					33	13	4	0	0	0	0.01386	1	8391	8391		103.82	10.658	1	29434000			1485	2113	735	742	1493	1493					0.04509767551905952
AEKDGVKVP	9	Unmodified	_AEKDGVKVP_					0	0	0		ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000107341|ENST00000263228|UBE2R2	MULTI-MSMS	HCT116MG_D190212_S4	4	471.766357421875	2	471.766374	941.518196	0.36781	0.00017352	-0.0030401	-1.4342E-06	0.36477	0.00017209	471.766306217627	24.084	0.67491	23.826	23.625	24.3	-0.25816					26	12	3	0	0	0	0.056114	1	8462	8462		71.708	10.106	1	13352000			1486	2113	735	742	1494	1494					0.04509767551905952
AEKDNNLVP	9	Unmodified	_AEKDNNLVP_					0	0	0		ENSG00000110200|ENST00000227618|ANAPC15;nc|ENSG00000110200|P60006-2|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	MULTI-MSMS	HCT116MG_D190212_S1	1	500.2592468261719	2	500.258914	998.503274	0.52865	0.00026446	-0.018069	-9.039E-06	0.51058	0.00025542	500.25889436350076	30.81	0.72832	30.81	30.347	31.076	0					18	13	2	0	0	0	0.030723	1	11271	11271		85.642	21.405	1	10743000			1487	2240	736	743	1495	1495					0.0039627568389732915
AEKDNNLVP	9	Unmodified	_AEKDNNLVP_					0	0	0		ENSG00000110200|ENST00000227618|ANAPC15;nc|ENSG00000110200|P60006-2|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	MULTI-MSMS	HCT116MG_D190212_S2	2	500.25921630859375	2	500.258914	998.503274	0.41743	0.00020882	-0.14761	-7.3843E-05	0.26982	0.00013498	500.25878767790715	31.112	0.72423	30.845	30.404	31.128	-0.26704					39	13	4	0	0	0	0.066823	1	11377	11377		66.457	20.436	1	124500000			1488	2240	736	743	1496	1496					0.0039627568389732915
AEKDNNLVP	9	Unmodified	_AEKDNNLVP_					0	0	0		ENSG00000110200|ENST00000227618|ANAPC15;nc|ENSG00000110200|P60006-2|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	MULTI-MSMS	HCT116MG_D190212_S2	2	999.5108642578125	1	999.510551	998.503274	0.50866	0.00050841	0.2233	0.00022319	0.73196	0.0007316	999.5107423887918	31.075	0.51744	30.808	30.456	30.974	-0.26704					14	9	2	0	0	0	0.047849	1	11481	11481		75.761	15.687	1	13493000			1489	2240	736	743	1497	1497					0.0039627568389732915
AEKDNNLVP	9	Unmodified	_AEKDNNLVP_					0	0	0		ENSG00000110200|ENST00000227618|ANAPC15;nc|ENSG00000110200|P60006-2|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	MULTI-MSMS	HCT116MG_D190212_S3	3	500.2589111328125	2	500.258914	998.503274	0.36822	0.0001842	0.17388	8.6986E-05	0.5421	0.00027119	500.25894194367567	31.196	1.0115	30.936	30.324	31.335	-0.26071					47	19	4	0	0	0	0.026999	1	11293	11293		89.401	18.267	1	55168000			1490	2240	736	743	1498	1498					0.0039627568389732915
AEKDNNLVP	9	Unmodified	_AEKDNNLVP_					0	0	0		ENSG00000110200|ENST00000227618|ANAPC15;nc|ENSG00000110200|P60006-2|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	ENSG00000110200|ENST00000227618|ANAPC15	MULTI-MSMS	HCT116MG_D190212_S4	4	500.2593078613281	2	500.258914	998.503274	0.32868	0.00016442	0.20448	0.00010229	0.53316	0.00026672	500.25902778999273	31.362	1.14	30.992	30.455	31.595	-0.37026					34	21	3	0	0	0	0.026999	2	11323	11296;11323		89.401	13.64	1	17783000			1491	2240	736	743	1499;1500	1500					0.0039627568389732915
AEKEALSSK	9	Unmodified	_AEKEALSSK_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	481.7613220214844	2	481.761289	961.508025	0.22959	0.00011061	-0.12751	-6.1429E-05	0.10209	4.9181E-05	481.7611864343167	15.197	0.20893	15.197	15.066	15.275	0					5	3	2	0	0	0	0.43843	1	5058	5058		20.415	1.1575	1	9924300			1492	7928	737	744	1501	1501					0.02573159826670235
AEKEALSSK	9	Unmodified	_AEKEALSSK_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	481.761289	961.508025	0.22959	0.00011061	-0.12751	-6.1429E-05	0.10209	4.9181E-05	481.7611864343167	15.197	0.20893	15.197	15.066	15.275	0	0.18012	-0.00019961	NaN	20.415	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9924300			1493	7928	737	744							0.02573159826670235
AEKEFNETM	9	Unmodified	_AEKEFNETM_					0	0	0		nc|ENSG00000066135|O75164-2|KDM4A;ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	nc|ENSG00000066135|O75164-2|KDM4A	nc|ENSG00000066135|O75164-2|KDM4A	MSMS	HCT116MG_D190212_S2	2	549.7426147460938	2	549.742239	1097.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.165	1	29.88	29.38	30.38	-0.28453								0	0	0	0.021869	1	11079	11079		90.135	23.678	1				1494	1168	738	745	1502	1502					-0.07491094150327626
AEKEFNETMA	10	Unmodified	_AEKEFNETMA_					0	0	0		nc|ENSG00000066135|O75164-2|KDM4A;ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	nc|ENSG00000066135|O75164-2|KDM4A	nc|ENSG00000066135|O75164-2|KDM4A	MULTI-MSMS	HCT116MG_D190212_S1	1	585.2614135742188	2	585.260796	1168.50704	0.73532	0.00043036	0.52238	0.00030573	1.2577	0.00073609	585.260980129889	29.347	0.31272	29.347	29.216	29.529	0					6	5	2	0	0	0	0.59588	1	10749	10749		28.495	10.348	1	5936700			1495	1168	739	746	1503	1503					-0.07047422604546227
AEKEFNETMA	10	Unmodified	_AEKEFNETMA_					0	0	0		nc|ENSG00000066135|O75164-2|KDM4A;ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	nc|ENSG00000066135|O75164-2|KDM4A	nc|ENSG00000066135|O75164-2|KDM4A	MULTI-MSMS	HCT116MG_D190212_S2	2	585.2611083984375	2	585.260796	1168.50704	0.72869	0.00042647	-0.030828	-1.8042E-05	0.69786	0.00040843	585.2605455331428	29.719	0.20648	29.418	29.289	29.495	-0.30095					6	3	2	0	0	0	0.13545	1	10922	10922		67.081	41.06	1	29190000			1496	1168	739	746	1504	1504					-0.07047422604546227
AEKEFNETMA	10	Unmodified	_AEKEFNETMA_					0	0	0		nc|ENSG00000066135|O75164-2|KDM4A;ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.K699Sfs*7|1|0.06|ENSG00000066135|chr1:43690902-43690902|A/-|frameshift_variant	nc|ENSG00000066135|O75164-2|KDM4A	nc|ENSG00000066135|O75164-2|KDM4A	MULTI-MATCH	HCT116MG_D190212_S3	3		2	585.260796	1168.50704	0.62945	0.00036839	0.44486	0.00026036	1.0743	0.00062875	585.2612390759178	29.785	0.21422	29.548	29.448	29.662	-0.23655	0.11025	0.000122	NaN	67.081	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3601000			1497	1168	739	746							-0.07047422604546227
AEKEKTVSA	9	Unmodified	_AEKEKTVSA_					0	0	0		ENSG00000113638|ENST00000337702|TTC33;ENST00000511730.2_1_5:40716249-40756023:-|nuORF	ENSG00000113638|ENST00000337702|TTC33	ENSG00000113638|ENST00000337702|TTC33	MULTI-SECPEP	HCT116MG_D190212_S2	2	481.1789245605469	2	481.761289	961.508025	0.057733	2.7814E-05	0.32518	0.00015666	0.38292	0.00018447	481.76141497457525	15.163	0.15636	14.837	14.706	14.863	-0.32684					4	2	2	0	0	0	0.20548	1	5017	5017		32.786	7.7947	1	696430			1498	2398	740	747	1505	1505					0.025731598266588662
AEKEMHNLA	9	Unmodified	_AEKEMHNLA_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	521.7531127929688	2	521.752941	1041.49133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.38	1	20.428	19.928	20.928	0.048107								0	0	0	0.69431	1	7045	7045		19.362	5.4559	1				1499	1806	741	748	1506	1506					-0.02775664330943073
AEKEMTSVVA	10	Unmodified	_AEKEMTSVVA_					0	0	0		BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	532.7686157226562	2	532.768257	1063.52196	0.64154	0.00034179	0.84865	0.00045213	1.4902	0.00079392	532.7682084706644	28.556	0.26658	28.556	28.375	28.641	0					10	4	3	0	0	0	0.31077	1	10417	10417		49.527	26.791	1	8515900			1500	255	742	749	1507	1507					-0.007259307365302448
AEKEMTSVVA	10	Unmodified	_AEKEMTSVVA_					0	0	0		BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7686157226562	2	532.768257	1063.52196	0.42014	0.00022384	0.25598	0.00013638	0.67612	0.00036021	532.7683524704746	29.051	0.30787	28.735	28.555	28.863	-0.31613					8	5	2	0	0	0	0.12401	1	10627	10627		69.338	38.07	1	87698000			1501	255	742	749	1508	1508					-0.007259307365302448
AEKEMTSVVA	10	Unmodified	_AEKEMTSVVA_					0	0	0		BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	533.270263671875	2	532.768257	1063.52196	0.58271	0.00031045	-0.078811	-4.1988E-05	0.5039	0.00026846	532.7681535556018	29.034	0.46844	28.812	28.577	29.046	-0.22195					19	8	4	0	0	0	0.12401	1	10517	10517		69.338	34.936	1	46106000			1502	255	742	749	1509	1509					-0.007259307365302448
AEKEMTSVVA	10	Unmodified	_AEKEMTSVVA_					0	0	0		BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	532.7684936523438	2	532.768257	1063.52196	0.42784	0.00022794	0.53398	0.00028449	0.96183	0.00051243	532.7683066713985	29.2	0.41534	28.86	28.522	28.938	-0.34059					13	7	3	0	0	0	0.12401	1	10536	10536		69.338	38.07	1	12065000			1503	255	742	749	1510	1510					-0.007259307365302448
AEKEMTSVVA	10	Oxidation (M)	_AEKEM(Oxidation (M))TSVVA_		AEKEM(1)TSVVA		AEKEM(50)TSVVA	0	0	1		BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant;BAZ2A|p.V772Sfs*9|1|0.34|ENSG00000076108|chr12:56606016-56606016|T/-|frameshift_variant;BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	BAZ2A|p.V259Dfs*14|1|0.23|ENSG00000076108|chr12:56614090-56614099|AACGATTCCA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	540.7658081054688	2	540.765714	1079.51688	0.33879	0.00018321	-0.543	-0.00029364	-0.20421	-0.00011043	540.7658136505047	21.15	0.26087	21.176	21.07	21.331	0.026037					9	4	3	0	0	0	0.31077	1	7375	7375		49.527	17.222	1	3849100			1504	255	742	750	1511	1511		3			-0.01970234599161813
AEKEPEQPP	9	Unmodified	_AEKEPEQPP_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7510375976562	2	512.750921	1023.48729	0.17139	8.7883E-05	0.52643	0.00026993	0.69783	0.00035781	512.7511717902379	18.78	0.88506	18.849	18.302	19.187	0.069159					20	16	2	0	0	0	0.05892	1	6424	6424		70.332	20.778	1	3818900			1505	4190	743	751	1512	1512					-0.023514305530056845
AEKEPEQPP	9	Unmodified	_AEKEPEQPP_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	HCT116MG_D190212_S4	4	512.7496337890625	2	512.750921	1023.48729	0.16619	8.5212E-05	0.47812	0.00024515	0.6443	0.00033037	512.7509037407041	19.03	0.67583	18.843	18.401	19.077	-0.18674					18	12	2	0	0	0	0.12205	1	6453	6453		53.833	15.657	1	1959200			1506	4190	743	751	1513	1513					-0.023514305530056845
AEKEPFLVP	9	Unmodified	_AEKEPFLVP_					0	0	0		ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2841186523438	2	515.2844	1028.55425	0.37038	0.00019085	-0.79946	-0.00041195	-0.42907	-0.00022109	515.2837762335301	47.212	0.36223	47.09	46.974	47.336	-0.12175					10	6	2	0	0	0	0.22946	1	18043	18043		38.176	5.8701	1	12021000			1507	3963	744	752	1514	1514					0.041112247287628634
AEKEPVPVP	9	Unmodified	_AEKEPVPVP_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	483.77044677734375	2	483.26875	964.522947	0.37379	0.00018064	-0.27992	-0.00013528	0.093871	4.5365E-05	483.26861248280073	33.094	0.62257	33.094	32.933	33.556	0					15	11	2	0	0	0	0.05892	1	12257	12257		70.332	2.2513	1	7208900			1508	927	745	753	1515	1515					0.03926651694666816
AEKEPVPVP	9	Unmodified	_AEKEPVPVP_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	483.2690734863281	2	483.26875	964.522947	0.48779	0.00023573	0.0017116	8.2716E-07	0.4895	0.00023656	483.2686370408332	33.443	0.77563	33.25	32.863	33.639	-0.19297					24	14	2	0	0	0	0.040027	1	12383	12383		79.596	11.516	1	40092000			1509	927	745	753	1516	1516					0.03926651694666816
AEKEPVPVP	9	Unmodified	_AEKEPVPVP_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.26904296875	2	483.26875	964.522947	0.24988	0.00012076	0.55494	0.00026819	0.80483	0.00038895	483.26888480248107	33.482	0.57342	33.191	32.937	33.511	-0.29013					18	12	2	0	0	0	0.082877	1	12295	12295		61.602	4.1306	1	7280600			1510	927	745	753	1517	1517					0.03926651694666816
AEKERLREA	9	Unmodified	_AEKERLREA_					0	0	0		EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant;nc|ENSG00000115109|Q9HCM4-2|EPB41L5;ENSG00000115109.14,EPB41L5,chr2,+,I25.1,120164911,120167465|105|7.95|6|intron;nc|ENSG00000115109|Q9HCM4-4|EPB41L5;EPB41L5|p.P702Qfs*6|1|0.31|ENSG00000115109|chr2:120167973-120167973|C/-|frameshift_variant;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5	EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant	EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	368.2059020996094	3	367.871883	1100.59382	-0.35116	-0.00012918	0.29493	0.0001085	-0.056228	-2.0685E-05	367.8719813405529	11.746	0.21921	11.456	11.36	11.579	-0.28953					12	8	2	0	0	0	0.62849	1	3817	3817		9.544	0.56773	1	384900			1511	2445	746	754	1518	1518					0.047547447321903746
AEKERLREA	9	Unmodified	_AEKERLREA_					0	0	0		EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant;nc|ENSG00000115109|Q9HCM4-2|EPB41L5;ENSG00000115109.14,EPB41L5,chr2,+,I25.1,120164911,120167465|105|7.95|6|intron;nc|ENSG00000115109|Q9HCM4-4|EPB41L5;EPB41L5|p.P702Qfs*6|1|0.31|ENSG00000115109|chr2:120167973-120167973|C/-|frameshift_variant;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5	EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant	EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	551.3042602539062	2	551.304187	1100.59382	0.28847	0.00015903	0.19574	0.00010791	0.48421	0.00026695	551.304179308289	15.998	0.4177	15.663	15.428	15.846	-0.33451					13	7	3	0	0	0	0.25384	1	5377	5377		31.268	0	1	19298000			1512	2445	746	754	1519	1519					0.047547447321903746
AEKERLREA	9	Unmodified	_AEKERLREA_					0	0	0		EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant;nc|ENSG00000115109|Q9HCM4-2|EPB41L5;ENSG00000115109.14,EPB41L5,chr2,+,I25.1,120164911,120167465|105|7.95|6|intron;nc|ENSG00000115109|Q9HCM4-4|EPB41L5;EPB41L5|p.P702Qfs*6|1|0.31|ENSG00000115109|chr2:120167973-120167973|C/-|frameshift_variant;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5	EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant	EPB41L5|p.W268Gfs*4|1|0.41|ENSG00000115109|chr2:120078574-120078574|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	367.8716125488281	3	367.871883	1100.59382	-0.30739	-0.00011308	-0.1176	-4.3261E-05	-0.42499	-0.00015634	367.87178633910247	16.002	0.261	15.668	15.48	15.741	-0.33451					8	4	3	0	0	0	0.12465	1	5381	5381		53.317	7.5768	1	7747200			1513	2445	746	754	1520	1520					0.047547447321903746
AEKFRNPKA	9	Unmodified	_AEKFRNPKA_					0	0	0		ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19;nc|ENSG00000165233|Q96LW7|CARD19	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	530.798828125	2	530.79854	1059.58253	0.45424	0.00024111	-0.018444	-9.7902E-06	0.4358	0.00023132	530.7984126355423	17.33	0.46967	16.98	16.613	17.082	-0.34933					18	8	3	0	0	0	0.022991	1	5866	5866		110.79	61.238	1	10127000			1514	4756	747	755	1521	1521					0.055119674287197995
AEKFRNPKA	9	Unmodified	_AEKFRNPKA_					0	0	0		ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19;nc|ENSG00000165233|Q96LW7|CARD19	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	354.2013854980469	3	354.201452	1059.58253	-0.12667	-4.4866E-05	-0.083956	-2.9737E-05	-0.21063	-7.4604E-05	354.2013781491875	17.316	0.3652	16.967	16.717	17.082	-0.34933					12	6	3	0	0	0	0.12465	1	5905	5905		53.317	34.944	1	5990100			1515	4756	747	755	1522	1522					0.055119674287197995
AEKFRNPKA	9	Unmodified	_AEKFRNPKA_					0	0	0		ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19;nc|ENSG00000165233|Q96LW7|CARD19	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	530.79854	1059.58253	0.3268	0.00017346	-0.32473	-0.00017237	0.0020646	1.0959E-06	530.7981848537247	16.707	0.15609	16.707	16.577	16.733	0	-0.13664	-0.00030163	NaN	110.79	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1136800			1516	4756	747	755							0.055119674287197995
AEKFWYDMA	9	Unmodified	_AEKFWYDMA_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-MSMS	HCT116MG_D190212_S1	1	580.7581176757812	2	580.757692	1159.50083	0.33776	0.00019616	-0.14559	-8.455E-05	0.19218	0.00011161	580.7577684342835	50.951	0.20704	50.951	50.833	51.04	0					8	3	3	0	0	0	0.064006	1	19469	19469		67.838	43.818	1	17082000			1517	2973;9450	748	756	1523	1523					-0.072538960454267
AEKFWYDMA	9	Unmodified	_AEKFWYDMA_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-MSMS	HCT116MG_D190212_S2	2	580.758056640625	2	580.757692	1159.50083	0.44217	0.0002568	0.43653	0.00025352	0.8787	0.00051031	580.7577769231499	51.222	0.30952	51.044	50.862	51.171	-0.17868					16	5	4	0	0	0	0.022505	1	19636	19636		93.938	60.493	1	95697000			1518	2973;9450	748	756	1524	1524					-0.072538960454267
AEKFWYDMA	9	Unmodified	_AEKFWYDMA_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-MSMS	HCT116MG_D190212_S3	3	580.7574462890625	2	580.757692	1159.50083	0.4156	0.00024136	-0.37578	-0.00021824	0.039822	2.3127E-05	580.7575425634559	51.353	0.26263	51.041	50.91	51.172	-0.31166					10	4	3	0	0	0	0.068828	1	19396	19396		65.474	43.937	1	6692400			1519	2973;9450	748	756	1525	1525					-0.072538960454267
AEKGDVGLVA	10	Unmodified	_AEKGDVGLVA_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MSMS	HCT116MG_D190212_S1	1	479.76385498046875	2	479.763832	957.513111	0.23195	0.00011128	0.033266	1.596E-05	0.26522	0.00012724	479.7638059657635	30.529	0.46771	30.529	30.296	30.763	0					13	8	2	0	0	0	0.12401	1	11181	11181		69.338	19.405	1	17481000			1520	2012;9413	749	757	1526	1526					0.032654636892857525
AEKGDVGLVA	10	Unmodified	_AEKGDVGLVA_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MSMS	HCT116MG_D190212_S2	2	479.763916015625	2	479.763832	957.513111	0.13298	6.3801E-05	0.18026	8.6483E-05	0.31325	0.00015028	479.76384773615166	30.904	0.46553	30.637	30.456	30.922	-0.26704					23	8	4	0	0	0	0.060266	1	11381	11381		81.915	3.1872	1	317200000			1521	2012;9413	749	757	1527	1527					0.032654636892857525
AEKGDVGLVA	10	Unmodified	_AEKGDVGLVA_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MSMS	HCT116MG_D190212_S2	2	958.5196533203125	1	958.520387	957.513111	0.54799	0.00052526	-0.090563	-8.6806E-05	0.45742	0.00043845	958.5201631631268	30.904	0.31129	30.637	30.508	30.819	-0.26704					11	5	3	0	0	0	0.060266	1	11389	11389		81.915	12.81	1	59579000			1522	2012;9413	749	757	1528	1528					0.032654636892857525
AEKGDVGLVA	10	Unmodified	_AEKGDVGLVA_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MSMS	HCT116MG_D190212_S3	3	479.7636413574219	2	479.763832	957.513111	0.12069	5.7902E-05	0.15232	7.3075E-05	0.273	0.00013098	479.7638130339394	30.995	0.73033	30.735	30.448	31.179	-0.26071					32	13	4	0	0	0	0.060266	1	11289	11289		81.915	3.1872	1	98901000			1523	2012;9413	749	757	1529	1529					0.032654636892857525
AEKGDVGLVA	10	Unmodified	_AEKGDVGLVA_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MSMS	HCT116MG_D190212_S3	3	958.5203247070312	1	958.520387	957.513111	0.61356	0.00058811	-0.51656	-0.00049514	0.096992	9.2969E-05	958.5197108900002	30.995	0.26075	30.735	30.604	30.865	-0.26071					8	4	2	0	0	0	0.060266	1	11311	11311		81.915	12.81	1	11743000			1524	2012;9413	749	757	1530	1530					0.032654636892857525
AEKGDVGLVA	10	Unmodified	_AEKGDVGLVA_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MSMS	HCT116MG_D190212_S4	4	479.7635498046875	2	479.763832	957.513111	0.27325	0.0001311	-0.001359	-6.5201E-07	0.2719	0.00013045	479.7637751962086	31.212	0.517	30.842	30.61	31.127	-0.37026					21	9	4	0	0	0	0.18147	1	11295	11295		61.09	11.157	1	24059000			1525	2012;9413	749	757	1531	1531					0.032654636892857525
AEKGDVGLVA	10	Unmodified	_AEKGDVGLVA_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MATCH	HCT116MG_D190212_S4	4		1	958.520387	957.513111	0.50182	0.00048101	0.79932	0.00076617	1.3011	0.0012472	958.5209646256664	31.16	0.15344	30.79	30.714	30.868	-0.37026	0.069186	0.0010308	NaN	81.915	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2483400			1526	2012;9413	749	757							0.032654636892857525
AEKGNFEAA	9	Unmodified	_AEKGNFEAA_					0	0	0		ENST00000569093.1_1_16:2479482-2485933:+|nuORF;ENSG00000162063|ENST00000397066|CCNF	ENST00000569093.1_1_16:2479482-2485933:+|nuORF	ENST00000569093.1_1_16:2479482-2485933:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	468.7243957519531	2	468.724707	935.43486	0.24653	0.00011555	-0.64097	-0.00030044	-0.39444	-0.00018488	468.7244528877626	21.792	0.52326	21.798	21.576	22.099	0.0057106					13	9	2	0	0	0	0.16306	1	7625	7625		45.7	3.86	1	3876200			1527	4507	750	758	1532	1532					-0.03543968895951366
AEKHNFAKP	9	Unmodified	_AEKHNFAKP_					0	0	0		ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	MULTI-MSMS	HCT116MG_D190212_S1	1	521.2776489257812	2	521.277441	1040.54033	0.5211	0.00027164	-0.23494	-0.00012247	0.28616	0.00014917	521.2775025356266	17.108	0.36513	17.108	16.837	17.202	0					9	6	2	0	0	0	0.030723	2	5818	5797;5818		85.642	41.783	1	2070400			1528	2377	751	759	1533;1534	1534					0.02167992020326892
AEKHNFAKP	9	Unmodified	_AEKHNFAKP_					0	0	0		ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	MULTI-MSMS	HCT116MG_D190212_S2	2	521.277099609375	2	521.277441	1040.54033	0.31496	0.00016418	0.028023	1.4608E-05	0.34298	0.00017879	521.2774418925894	17.875	0.78363	17.519	16.866	17.65	-0.35647					27	14	2	0	0	0	0.02327	1	6015	6015		93.166	55.192	1	29920000			1529	2377	751	759	1535	1535					0.02167992020326892
AEKIAQVA	8	Unmodified	_AEKIAQVA_					0	0	0		ENSG00000107566|ENST00000421367|ERLIN1	ENSG00000107566|ENST00000421367|ERLIN1	ENSG00000107566|ENST00000421367|ERLIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	415.24249267578125	2	415.242535	828.470518	0.0072272	3.001E-06	0.24629	0.00010227	0.25352	0.00010527	415.2424308707254	24.957	0.20722	24.582	24.452	24.66	-0.37521					6	3	2	0	0	0	0.079196	1	8976	8976		99.799	18.186	1	13549000			1530	2118	752	760	1536	1536					0.04942113351705757
AEKIASIGQTA	11	Unmodified	_AEKIASIGQTA_					0	0	0		nc|ENSG00000119844|Q6ULP2-7|AFTPH;ENST00000498706.5_1_2:64778608-64806757:+|nuORF;nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	MSMS	HCT116MG_D190212_S2	2	544.8017578125	2	544.800946	1087.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.007	1	28.691	28.191	29.191	-0.31613								0	0	0	0.63979	1	10606	10606		41.347	17.557	1				1531	2668	753	761	1537	1537					0.04704806780819126
AEKIDGVFAA	10	Unmodified	_AEKIDGVFAA_					0	0	0		ENSG00000163918|ENST00000296273|RFC4;ENST00000479307.5_1_3:186508099-186512490:-|nuORF	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	HCT116MG_D190212_S1	1	510.7714538574219	2	510.771657	1019.52876	0.089825	4.588E-05	-0.12936	-6.6073E-05	-0.039535	-2.0194E-05	510.7713721634072	40.67	0.25477	40.67	40.539	40.794	0					8	4	3	0	0	0	0.26839	1	15315	15315		53.317	24.822	1	12441000			1532	4648	754	762	1538	1538					0.019777502063334396
AEKIDGVFAA	10	Unmodified	_AEKIDGVFAA_					0	0	0		ENSG00000163918|ENST00000296273|RFC4;ENST00000479307.5_1_3:186508099-186512490:-|nuORF	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	HCT116MG_D190212_S2	2	510.771728515625	2	510.771657	1019.52876	0.49127	0.00025093	0.14662	7.4888E-05	0.63789	0.00032581	510.77159128258813	40.718	0.36092	40.648	40.468	40.829	-0.069626					14	6	3	0	0	0	0.10445	1	15367	15367		73.196	29.214	1	81803000			1533	4648	754	762	1539	1539					0.019777502063334396
AEKIDGVFAA	10	Unmodified	_AEKIDGVFAA_					0	0	0		ENSG00000163918|ENST00000296273|RFC4;ENST00000479307.5_1_3:186508099-186512490:-|nuORF	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	HCT116MG_D190212_S3	3	510.77130126953125	2	510.771657	1019.52876	0.37222	0.00019012	-0.1232	-6.2927E-05	0.24902	0.00012719	510.7715500775442	40.911	0.2605	40.61	40.475	40.736	-0.30185					10	4	3	0	0	0	0.14637	1	15206	15206		64.927	20.945	1	13186000			1534	4648	754	762	1540	1540					0.019777502063334396
AEKKDLPVT	9	Unmodified	_AEKKDLPVT_					0	0	0		ENSG00000179364|ENST00000447393|PACS2;nc|ENSG00000179364|Q86VP3-4|PACS2;nc|ENSG00000179364|Q86VP3|PACS2;ENST00000550790.1_1_14:105858932-105859698:+|nuORF;ENST00000551743.5_1_14:105849507-105861006:+|nuORF	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MULTI-MSMS	HCT116MG_D190212_S2	2	500.78717041015625	2	500.787307	999.560061	0.43503	0.00021786	0.013784	6.9028E-06	0.44881	0.00022476	500.78708019890934	22.098	0.26038	21.713	21.583	21.844	-0.38503					7	4	2	0	0	0	0.24534	1	7847	7847		36.506	1.5741	1	11285000			1535	5553	755	763	1541	1541					0.060263232404167866
AEKKFIDIA	9	Unmodified	_AEKKFIDIA_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	HCT116MG_D190212_S1	1	517.7974243164062	2	517.797675	1033.5808	0.34785	0.00018012	-0.07113	-3.6831E-05	0.27672	0.00014328	517.7972522431786	36.339	0.26792	36.339	36.202	36.47	0					6	4	2	0	0	0	0.25384	1	13573	13573		35.612	6.5307	1	6151100			1536	1845	756	764	1542	1542					0.06534913620112093
AEKKFIDIA	9	Unmodified	_AEKKFIDIA_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	HCT116MG_D190212_S2	2	517.79736328125	2	517.797675	1033.5808	0.41966	0.0002173	-0.14155	-7.3294E-05	0.27811	0.000144	517.7974936782027	36.433	0.25914	36.305	36.122	36.382	-0.12799					9	4	3	0	0	0	0.06555	1	13628	13628		67.081	30.575	1	47281000			1537	1845	756	764	1543	1543					0.06534913620112093
AEKKFIDIA	9	Unmodified	_AEKKFIDIA_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	HCT116MG_D190212_S3	3	517.746826171875	2	517.797675	1033.5808	0.10518	5.4463E-05	0.60412	0.00031281	0.7093	0.00036728	517.7979490369829	36.584	0.26056	36.283	36.145	36.405	-0.30113					9	4	3	0	0	0	0.13631	1	13544	13544		57.249	28.168	1	8686700			1538	1845	756	764	1544	1544					0.06534913620112093
AEKKFIDIAA	10	Unmodified	_AEKKFIDIAA_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	HCT116MG_D190212_S2	2	553.8146362304688	2	553.316232	1104.61791	0.28466	0.00015751	-4.0419	-0.0022365	-3.7573	-0.002079	553.8150423473743	37.045	0.30921	36.931	36.757	37.066	-0.11478					10	5	3	0	0	0	0.62981	1	13916	13916		35.612	10.621	1	17403000			1539	1845	757	765	1545	1545					0.06978585165870754
AEKLAELV	8	Unmodified	_AEKLAELV_					0	0	0			REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	872.5107421875	1	872.50876	871.501483	0.84227	0.00073489	1.3129	0.0011455	2.1552	0.0018804	872.5098451342215	51.222	0.41325	51.044	50.81	51.223	-0.17868					13	7	2	0	0	0	0.1772	1	19642	19642		78.149	7.0158	1	45413000	+		1540	16070	758	766	1546	1546					0.0605926666595451
AEKLAELV	8	Unmodified	_AEKLAELV_					0	0	0			REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	872.5095825195312	1	872.50876	871.501483	0.758	0.00066136	-0.13677	-0.00011933	0.62123	0.00054203	872.508597204022	51.422	0.31238	51.072	50.942	51.254	-0.35028					9	5	2	0	0	0	0.1772	1	19150	19150		78.149	7.0158	1	4100000	+		1541	16070	758	766	1547	1547					0.0605926666595451
AEKLAELV	8	Unmodified	_AEKLAELV_					0	0	0			REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	872.50876	871.501483	0.84227	0.00073489	1.3129	0.0011455	2.1552	0.0018804	872.5098451342215	51.222	0.41325	51.044	50.81	51.223	-0.17868	-0.014136	0.00078236	NaN	78.149	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45413000	+		1542	16070	758	766							0.0605926666595451
AEKLAELV	8	Unmodified	_AEKLAELV_					0	0	0			REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	REV__ENST00000494197.1_1_5:31847735-31848014:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	872.50876	871.501483	0.758	0.00066136	-0.13677	-0.00011933	0.62123	0.00054203	872.508597204022	51.422	0.31238	51.072	50.942	51.254	-0.35028	0.014136	-0.00048252	NaN	78.149	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4100000	+		1543	16070	758	766							0.0605926666595451
AEKLDWARE	9	Unmodified	_AEKLDWARE_					0	0	0		ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	HCT116MG_D190212_S2	2	559.2857055664062	2	559.285463	1116.55637	0.60501	0.00033837	0.036052	2.0163E-05	0.64106	0.00035854	559.2854264291835	31.651	0.26	31.402	31.25	31.51	-0.24883					7	4	2	0	0	0	0.049866	1	11707	11707		74.772	23.357	1	18991000			1544	1688	759	767	1548	1548					0.002756534665650179
AEKLDWARE	9	Unmodified	_AEKLDWARE_					0	0	0		ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	HCT116MG_D190212_S3	3	559.28564453125	2	559.285463	1116.55637	0.32127	0.00017968	-0.21615	-0.00012089	0.10513	5.8797E-05	559.2854600466076	31.83	0.26033	31.56	31.378	31.638	-0.27028					6	4	2	0	0	0	0.17033	1	11647	11647		44.392	16.763	1	4766900			1545	1688	759	767	1549	1549					0.002756534665650179
AEKLGFAGL	9	Unmodified	_AEKLGFAGL_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	HCT116MG_D190212_S1	1	453.2583312988281	2	453.258185	904.501818	0.032853	1.4891E-05	0.28068	0.00012722	0.31353	0.00014211	453.25815635762376	49.154	0.31178	49.154	48.974	49.286	0					12	5	3	0	0	0	0.01405	1	18731	18731		103.35	17.997	1	54486000			1546	4090	760	768	1550	1550					0.04574686385797122
AEKLGFAGL	9	Unmodified	_AEKLGFAGL_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	HCT116MG_D190212_S2	2	453.2580261230469	2	453.258185	904.501818	0.028703	1.301E-05	0.00024029	1.0891E-07	0.028944	1.3119E-05	453.2580976830295	49.195	0.4554	49.041	48.884	49.339	-0.15405					17	8	3	0	0	0	0.0094709	1	18813	18813		114.65	29.292	1	165150000			1547	4090	760	768	1551	1551					0.04574686385797122
AEKLGFAGL	9	Unmodified	_AEKLGFAGL_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	HCT116MG_D190212_S2	2	905.5100708007812	1	905.509094	904.501818	0.66403	0.00060128	0.29339	0.00026567	0.95742	0.00086695	905.5094344672855	49.215	0.25276	49.061	48.935	49.187	-0.15405					6	4	2	0	0	0	0.0080847	1	18856	18856		118.07	43.646	1	43781000			1548	4090	760	768	1552	1552					0.04574686385797122
AEKLGFAGL	9	Unmodified	_AEKLGFAGL_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	HCT116MG_D190212_S3	3	453.25823974609375	2	453.258185	904.501818	0.084821	3.8446E-05	0.35251	0.00015978	0.43733	0.00019822	453.2581952345847	49.44	0.36629	49.124	48.975	49.341	-0.31596					19	6	4	0	0	0	0.0094709	1	18613	18613		114.65	35.921	1	37078000			1549	4090	760	768	1553	1553					0.04574686385797122
AEKLGFAGL	9	Unmodified	_AEKLGFAGL_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	HCT116MG_D190212_S4	4	453.2582702636719	2	453.258185	904.501818	0.16023	7.2626E-05	-0.33579	-0.0001522	-0.17556	-7.9575E-05	453.2580152889589	49.516	0.25416	49.154	49.015	49.269	-0.36213					9	4	3	0	0	0	0.012596	1	18369	18369		106.94	21.583	1	9950800			1550	4090	760	768	1554	1554					0.04574686385797122
AEKLHIYT	8	Unmodified	_AEKLHIYT_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MSMS	HCT116MG_D190212_S2	2	487.7304992675781	2	487.768917	973.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.289	1	16.94	16.44	17.44	-0.34933								0	0	0	0.69969	1	5875	5875		30.637	5.2372	1		+		1551	12515	761	769	1555	1555					0.03546071414530161
AEKLKSEAS	9	Unmodified	_AEKLKSEAS_					0	0	0			REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant	REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	481.641357421875	2	481.761289	961.508025	0.057733	2.7814E-05	0.32518	0.00015666	0.38292	0.00018447	481.76141497457525	15.163	0.15636	14.837	14.706	14.863	-0.32684					4	2	2	0	0	0	0.47413	1	4984	4984		18.373	0.50992	1	696430	+		1552	14013	762	770	1556	1556					0.025731598266588662
AEKLLSHGA	9	Unmodified	_AEKLLSHGA_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1;ENST00000427650.2_1_9:69386004-69400453:+|nuORF	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MSMS	HCT116MG_D190212_S2	2	463.2591247558594	2	463.258717	924.50288	0.1969	9.1215E-05	0.92297	0.00042757	1.1199	0.00051879	463.25911635414406	22.774	0.15601	22.388	22.31	22.466	-0.3852					4	2	2	0	0	0	0.17622	1	8111	8111		43.772	1.6778	1	6065100			1553	6626	763	771	1557	1557					0.037609007547075635
AEKLSTAQSA	10	Unmodified	_AEKLSTAQSA_					0	0	0		ENSG00000143158|ENST00000271373|MPC2	ENSG00000143158|ENST00000271373|MPC2	ENSG00000143158|ENST00000271373|MPC2	MULTI-SECPEP	HCT116MG_D190212_S2	2	503.7794494628906	2	503.264196	1004.51384	0.44567	0.00022429	-0.32476	-0.00016344	0.12091	6.0848E-05	503.2639766591788	19.241	0.20817	18.872	18.732	18.94	-0.3695					5	3	2	0	0	0	0.26137	1	6674	6674		28.234	9.8605	1	4801700			1554	3789	764	772	1558	1558					0.011762583383301717
AEKLSTAQSA	10	Unmodified	_AEKLSTAQSA_					0	0	0		ENSG00000143158|ENST00000271373|MPC2	ENSG00000143158|ENST00000271373|MPC2	ENSG00000143158|ENST00000271373|MPC2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	503.264196	1004.51384	0.29383	0.00014788	-0.13647	-6.8682E-05	0.15736	7.9194E-05	503.26405216592093	18.74	0.15635	18.74	18.662	18.819	0	-0.065552	7.668E-05	NaN	37.771	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1911600			1555	3789	764	772							0.011762583383301717
AEKLVFEPS	9	Unmodified	_AEKLVFEPS_					0	0	0			REV__AATK|p.F1101Sfs*3|1|0.46|ENSG00000181409|chr17:81120634-81120634|A/-|frameshift_variant	REV__AATK|p.F1101Sfs*3|1|0.46|ENSG00000181409|chr17:81120634-81120634|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	510.27374267578125	2	510.274032	1018.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.696	1	57.422	56.922	57.922	-0.27434								0	0	0	0.76902	1	21932	21932		4.3292	0	1		+		1556	9814	765	773	1559	1559					0.02498634349092299
AEKMDANSA	9	Unmodified	_AEKMDANSA_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	HCT116MG_D190212_S2	2	468.7081298828125	2	468.708199	935.401846	0.2438	0.00011427	-0.01238	-5.8025E-06	0.23142	0.00010847	468.7080438691775	16.845	0.57256	16.504	16.308	16.881	-0.34183					15	10	3	0	0	0	0.0068427	1	5717	5717		121.53	61.46	1	12269000			1557	3340	766	774	1560	1560					-0.06843919010316313
AEKMKGKK	8	Unmodified	_AEKMKGKK_					0	0	0			REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	MSMS	HCT116MG_D190212_S3	3	460.2756042480469	2	460.273312	918.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.42	1	29.192	28.692	29.692	-0.22805								0	0	0	0.8837	1	10687	10687		7.9102	2.6795	1		+		1558	11531	767	775	1561	1561					0.06954721779356987
AEKMKGKK	8	Unmodified	_AEKMKGKK_					0	0	0			REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	MSMS	HCT116MG_D190212_S4	4	460.2752380371094	2	460.273312	918.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.468	1	29.118	28.618	29.618	-0.34921								0	0	0	0.8837	1	10642	10642		7.9102	2.1497	1		+		1559	11531	767	775	1562	1562					0.06954721779356987
AEKNFLTTV	9	Unmodified	_AEKNFLTTV_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-SECPEP	HCT116MG_D190212_S2	2	511.28765869140625	2	511.779482	1021.54441	0.64964	0.00033247	-0.31012	-0.00015871	0.33951	0.00017376	511.77945055005995	43.649	0.25697	43.572	43.454	43.711	-0.077309					7	4	2	0	0	0	0.14607	1	16579	16579		53.404	24.322	1	10314000			1560	6049	768	776	1563	1563					0.03450036723370431
AEKNGYVTV	9	Unmodified	_AEKNGYVTV_					0	0	0		ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	490.7555236816406	2	490.756007	979.497461	0.40586	0.00019918	-0.050722	-2.4892E-05	0.35513	0.00017428	490.7558665481247	29.588	0.31231	29.588	29.425	29.737	0					11	5	3	0	0	0	0.0059958	1	10814	10814		128.93	32.566	1	33958000			1561	4405	769	777	1564	1564					0.006891771722280282
AEKNGYVTV	9	Unmodified	_AEKNGYVTV_					0	0	0		ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	490.7562255859375	2	490.756007	979.497461	-0.062429	-3.0638E-05	0.35089	0.0001722	0.28846	0.00014157	490.7561066673504	30.08	0.36114	29.795	29.564	29.925	-0.28453					18	6	4	0	0	0	0.0046822	1	11026	11026		140.63	10.861	1	175170000			1562	4405	769	777	1565	1565					0.006891771722280282
AEKNGYVTV	9	Unmodified	_AEKNGYVTV_					0	0	0		ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	980.505126953125	1	980.504737	979.497461	0.39532	0.00038762	-0.018901	-1.8533E-05	0.37642	0.00036908	980.504935121176	30.029	0.25808	29.744	29.615	29.873	-0.28453					8	4	2	0	0	0	0.0068427	1	11046	11046		121.53	10.859	1	25454000			1563	4405	769	777	1566	1566					0.006891771722280282
AEKNGYVTV	9	Unmodified	_AEKNGYVTV_					0	0	0		ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	490.7554626464844	2	490.756007	979.497461	0.22389	0.00010988	-0.10822	-5.3109E-05	0.11567	5.6766E-05	490.75584461003655	30.086	0.42027	29.836	29.597	30.017	-0.24946					17	7	4	0	0	0	0.0038512	1	10955	10955		152.89	42.211	1	36016000			1564	4405	769	777	1567	1567					0.006891771722280282
AEKNGYVTV	9	Unmodified	_AEKNGYVTV_					0	0	0		ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF;ENSG00000159210|ENST00000502492|SNF8	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	ENST00000514089.5_1_17:47007839-47013524:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	490.7558898925781	2	490.756007	979.497461	0.025757	1.264E-05	0.48277	0.00023692	0.50853	0.00024956	490.7561511872198	30.292	0.15572	29.935	29.805	29.961	-0.3571					4	2	2	0	0	0	0.045679	1	10982	10982		76.825	21.322	1	8173800			1565	4405	769	777	1568	1568					0.006891771722280282
AEKPAFGTP	9	Unmodified	_AEKPAFGTP_					0	0	0		ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ARHGAP17|p.P543Lfs*55|1|0.3|ENSG00000140750|chr16:24939460-24939460|G/-|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2398681640625	2	459.239993	916.465432	-0.16547	-7.5991E-05	-0.21537	-9.8905E-05	-0.38084	-0.0001749	459.2398134640544	30.115	0.46471	29.831	29.512	29.976	-0.28453					13	8	2	0	0	0	0.02327	1	11053	11053		93.166	40.898	1	23456000			1566	172	770	778	1569	1569					0.0038580948910293955
AEKPAFGTP	9	Unmodified	_AEKPAFGTP_					0	0	0		ENST00000575656.5_1_16:24960717-24971282:-|nuORF;ARHGAP17|p.P543Lfs*55|1|0.3|ENSG00000140750|chr16:24939460-24939460|G/-|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	459.24017333984375	2	459.239993	916.465432	0.46995	0.00021582	-0.29252	-0.00013433	0.17743	8.1483E-05	459.2398054541249	30.189	0.41975	29.939	29.65	30.069	-0.24946					12	7	2	0	0	0	0.066823	1	10967	10967		66.457	14.188	1	12229000			1567	172	770	778	1570	1570					0.0038580948910293955
AEKPFYVNV	9	Unmodified	_AEKPFYVNV_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7820434570312	2	533.782025	1065.5495	0.2642	0.00014102	0.91504	0.00048843	1.1792	0.00062946	533.7826407678472	44.225	0.31303	44.147	44.019	44.332	-0.078373					9	5	2	0	0	0	0.077982	1	16843	16843		62.573	16.552	1	43846000			1568	5905	771	779	1571	1571					0.019343405859899576
AEKPFYVNV	9	Unmodified	_AEKPFYVNV_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MATCH	HCT116MG_D190212_S1	1		2	533.782025	1065.5495	0.21873	0.00011675	0.80268	0.00042846	1.0214	0.00054521	533.7826753031552	44.24	0.26852	44.24	44.088	44.357	0	0.046376	-4.6792E-05	NaN	62.573	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4711400			1569	5905	771	779							0.019343405859899576
AEKPLQVAA	9	Unmodified	_AEKPLQVAA_					0	0	0		ENST00000460295.1_1_3:38180152-38181542:+|nuORF;nc|ENSG00000172936|Q99836-3|MYD88;ENST00000481122.5_1_3:38180729-38182774:+|nuORF;ENST00000484513.1_1_3:38180924-38181542:+|nuORF;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88	ENST00000460295.1_1_3:38180152-38181542:+|nuORF	ENST00000460295.1_1_3:38180152-38181542:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	463.7686767578125	2	463.768917	925.523281	0.48277	0.0002239	-0.86741	-0.00040228	-0.38464	-0.00017838	463.76856704325945	28.513	0.20841	28.307	28.177	28.385	-0.20593					5	3	2	0	0	0	0.24895	1	10350	10350		36.127	13.391	1	3655500			1570	5265	772	780	1572	1572					0.05754071414514783
AEKPPGSVA	9	Unmodified	_AEKPPGSVA_					0	0	0		ENST00000483218.1_1_2:237076144-237122398:+|nuORF	ENST00000483218.1_1_2:237076144-237122398:+|nuORF	ENST00000483218.1_1_2:237076144-237122398:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	428.2320556640625	2	428.232168	854.449782	0.049654	2.1263E-05	-0.66399	-0.00028434	-0.61434	-0.00026308	428.23182129509354	19.544	0.41614	19.174	18.992	19.408	-0.3695					12	7	3	0	0	0	0.1935	1	6859	6859		41.956	5.8285	1	4378300			1571	8271	773	781	1573	1573					0.016735229720438838
AEKPVTIHA	9	Unmodified	_AEKPVTIHA_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MSMS	HCT116MG_D190212_S2	2	483.2745056152344	2	483.274367	964.53418	0.3342	0.00016151	0.12527	6.0541E-05	0.45947	0.00022205	483.2743173022327	23.917	0.20851	23.534	23.403	23.612	-0.38324					5	3	2	0	0	0	0.053544	1	8571	8571		72.968	31.128	1	14507000			1572	1288	774	782	1574	1574					0.05049473788812975
AEKPVTIHA	9	Unmodified	_AEKPVTIHA_					0	0	0		nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	483.274367	964.53418	0.14638	7.0743E-05	-0.030046	-1.452E-05	0.11634	5.6223E-05	483.2742006613041	23.375	0.20892	23.375	23.262	23.471	0	-0.07962	-9.2643E-05	NaN	72.968	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3254000			1573	1288	774	782							0.05049473788812975
AEKQEQPPP	9	Unmodified	_AEKQEQPPP_					0	0	0		nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2587280273438	2	512.258914	1022.50327	0.38198	0.00019567	-0.20254	-0.00010375	0.17944	9.1919E-05	512.2588526059673	15.732	1.1975	15.732	15.38	16.577	0					27	22	2	0	0	0	0.035349	1	5238	5238		81.89	25.713	1	2447900			1574	3131	775	783	1575	1575					-0.007077243161006663
AEKQEQPPP	9	Unmodified	_AEKQEQPPP_					0	0	0		nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2589721679688	2	512.258914	1022.50327	0.18459	9.456E-05	0.22306	0.00011427	0.40766	0.00020883	512.2589411013363	15.893	2.3978	15.559	14.542	16.94	-0.33451					85	45	3	0	0	0	0.035349	3	5462	4992;5234;5462		81.89	24.131	1	17358000			1575	3131	775	783	1576;1577;1578	1578					-0.007077243161006663
AEKQEQPPP	9	Unmodified	_AEKQEQPPP_					0	0	0		nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	MULTI-MSMS	HCT116MG_D190212_S3	3	512.8947143554688	2	512.258914	1022.50327	0.22044	0.00011292	-0.15767	-8.0766E-05	0.06277	3.2154E-05	512.2591139508897	14.834	0.62399	14.918	14.726	15.35	0.083271					15	11	2	0	0	0	0.43775	1	4884	4884		20.454	3.3407	1	645890			1576	3131	775	783	1579	1579					-0.007077243161006663
AEKQFASP	8	Unmodified	_AEKQFASP_					0	0	0			REV__ENSG00000122121|ENST00000371106|XPNPEP2	REV__ENSG00000122121|ENST00000371106|XPNPEP2	MULTI-SECPEP	HCT116MG_D190212_S2	2	438.7159423828125	2	439.224342	876.434132	0.52417	0.00023023	0.56842	0.00024966	1.0926	0.00047989	439.2244193864686	46.917	0.20535	46.795	46.615	46.82	-0.12175					6	3	2	0	0	0	0.26426	1	17893	17893		14.838	4.0143	1	16521000	+		1577	11728	776	784	1580	1580					-0.009027635450024718
AEKQFASP	8	Unmodified	_AEKQFASP_					0	0	0			REV__ENSG00000122121|ENST00000371106|XPNPEP2	REV__ENSG00000122121|ENST00000371106|XPNPEP2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	439.224342	876.434132	0.11976	5.2599E-05	0.79503	0.0003492	0.91479	0.0004018	439.2245763689384	46.829	0.25984	46.829	46.647	46.907	0	0.0065258	0.00024627	NaN	14.838	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3370400	+		1578	11728	776	784							-0.009027635450024718
AEKQLKEKQKI	11	Unmodified	_AEKQLKEKQKI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MSMS	HCT116MG_D190212_S3	3	448.27490234375	3	448.273276	1341.798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.878	1	26.716	26.216	27.216	-0.16127								0	0	0	0.95954	1	9662	9662		1.3296	0.11481	1				1579	9500	777	785	1581	1581					0.140772641028434
AEKQPSQEV	9	Unmodified	_AEKQPSQEV_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	HCT116MG_D190212_S2	2	508.25677490234375	2	508.256371	1014.49819	0.36863	0.00018736	-0.08923	-4.5352E-05	0.2794	0.000142	508.25623103840405	19.595	0.31183	19.22	18.987	19.298	-0.37503					7	5	2	0	0	0	0.030039	1	6834	6834		86.332	13.364	1	7721900			1580	1704	778	786	1582	1582					-0.008480281787115018
AEKQPSQEV	9	Unmodified	_AEKQPSQEV_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MATCH	HCT116MG_D190212_S1	1		2	508.256371	1014.49819	0.26723	0.00013582	0.19381	9.8507E-05	0.46104	0.00023433	508.7580552751866	19.105	0.15632	19.105	18.975	19.131	0	-0.057362	0.00010328	NaN	86.332	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1250300			1581	1704	778	786							-0.008480281787115018
AEKRDPQELVA	11	Unmodified	_AEKRDPQELVA_					0	0	0		ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	628.79638671875	2	628.335684	1254.65681	0.81787	0.0005139	-0.37968	-0.00023857	0.43819	0.00027533	628.335441746408	26.116	0.2609	26.116	25.98	26.24	0					9	4	3	0	0	0	0.43452	2	9438	9438;9442		68.484	36.197	1	16783000			1582	4488	779	787	1583;1584	1583					0.03967265729556857
AEKRDPQELVA	11	Unmodified	_AEKRDPQELVA_					0	0	0		ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	628.3363037109375	2	628.335684	1254.65681	0.41742	0.00026228	0.070806	4.449E-05	0.48823	0.00030677	628.3357272456932	26.515	0.36295	26.154	25.972	26.335	-0.36164					16	6	4	0	0	0	0.32693	1	9598	9598		80.896	45.963	1	164660000			1583	4488	779	787	1585	1585					0.03967265729556857
AEKRDPQELVA	11	Unmodified	_AEKRDPQELVA_					0	0	0		ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	419.2261047363281	3	419.226215	1254.65681	-0.064952	-2.7229E-05	0.083391	3.496E-05	0.018439	7.73E-06	419.22612972247595	26.515	0.25956	26.154	26.024	26.284	-0.36164					10	4	3	0	0	0	0.44925	1	9621	9621		50.648	29.406	1	48061000			1584	4488	779	787	1586	1586					0.03967265729556857
AEKRDPQELVA	11	Unmodified	_AEKRDPQELVA_					0	0	0		ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	628.3359985351562	2	628.335684	1254.65681	0.56771	0.00035671	-0.056047	-3.5216E-05	0.51166	0.00032149	628.335596722406	26.222	0.36494	26.072	25.89	26.255	-0.14924					18	6	4	0	0	0	0.36207	2	9398	9398;9412		76.416	41.484	1	79053000			1585	4488	779	787	1587;1588	1587					0.03967265729556857
AEKRDPQELVA	11	Unmodified	_AEKRDPQELVA_					0	0	0		ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	419.2259216308594	3	419.226215	1254.65681	0.20555	8.6172E-05	-0.324	-0.00013583	-0.11845	-4.9656E-05	419.2260607448152	26.222	0.36494	26.072	25.89	26.255	-0.14924					16	6	4	0	0	0	0.57546	1	9400	9400		38.161	16.919	1	34391000			1586	4488	779	787	1589	1589					0.03967265729556857
AEKRDPQELVA	11	Unmodified	_AEKRDPQELVA_					0	0	0		ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	628.3359375	2	628.335684	1254.65681	0.26543	0.00016678	0.13952	8.7666E-05	0.40495	0.00025445	628.3358169298314	26.508	0.31195	26.208	26.026	26.338	-0.30087					15	5	4	0	0	0	0.19589	1	9450	9450		89.609	47.653	1	24436000			1587	4488	779	787	1590	1590					0.03967265729556857
AEKRDPQELVA	11	Unmodified	_AEKRDPQELVA_					0	0	0		ENST00000577292.5_1_17:73663452-73698652:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	ENST00000577292.5_1_17:73663452-73698652:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	419.56085205078125	3	419.226215	1254.65681	0.066512	2.7884E-05	-0.38891	-0.00016304	-0.3224	-0.00013516	419.22603572306616	26.492	0.20801	26.191	26.078	26.286	-0.30087					6	3	2	0	0	0	0.65542	1	9456	9456		29.291	20.54	1	8443200			1588	4488	779	787	1591	1591					0.03967265729556857
AEKRKRWRRKL	11	Unmodified	_AEKRKRWRRKL_					0	0	0			REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	510.23492431640625	3	509.654937	1525.94298	0.25743	0.0001312	1.4056	0.00071637	1.663	0.00084757	509.98963625871903	19.244	0.26019	19.244	19.027	19.287	0					5	4	2	0	0	0	0.36618	1	6608	6608		0.45452	0.38125	1	990230	+		1589	13359	780	788	1592	1592					0.20104789813194657
AEKRQGSP	8	Unmodified	_AEKRQGSP_					0	0	0			REV__PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	REV__PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	437.70611572265625	2	436.732866	871.451179	0.027505	1.2012E-05	0.052635	2.2987E-05	0.080139	3.4999E-05	436.732876738974	20.81	0.20818	20.845	20.714	20.923	0.034473					6	3	2	0	0	0	0.79062	1	7188	7188		12.532	0.89125	1	3201000	+		1590	11188	781	789	1593	1593					0.010311570608109832
AEKRQGSP	8	Unmodified	_AEKRQGSP_					0	0	0			REV__PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	REV__PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	436.7328796386719	2	436.732866	871.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.889	1	20.923	20.423	21.423	0.034473								0	0	0	0.55681	1	7250	7250		39.957	5.8549	1		+		1591	11188	781	789	1594	1594					0.010311570608109832
AEKRQRRRPWG	11	Unmodified	_AEKRQRRRPWG_					0	0	0		ENST00000574306.1_1_17:1617278-1619543:-|nuORF;ENST00000577164.1_1_17:1617268-1619543:-|nuORF	ENST00000574306.1_1_17:1617278-1619543:-|nuORF	ENST00000574306.1_1_17:1617278-1619543:-|nuORF	MSMS	HCT116MG_D190212_S2	2	720.0697631835938	2	720.408175	1438.8018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.014	1	42.943	42.443	43.443	-0.071552								0	0	0	0.95581	1	16297	16297		3.2813	0.54611	1				1592	8912	782	790	1595	1595					0.0999479143993085
AEKSDFEAV	9	Unmodified	_AEKSDFEAV_					0	0	0		nc|ENSG00000155090|Q13118-3|KLF10;nc|ENSG00000155090|Q13118-4|KLF10;nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	MULTI-MSMS	HCT116MG_D190212_S2	2	498.239501953125	2	498.237647	994.460741	0.62177	0.00030979	0.21888	0.00010905	0.84065	0.00041884	498.23780222801116	31.572	0.41517	31.323	31.095	31.51	-0.24883					16	7	3	0	0	0	0.014023	1	11646	11646		103.42	40.847	1	58816000			1593	4238	783	791	1596	1596					-0.03671119444334181
AEKSDFEAV	9	Unmodified	_AEKSDFEAV_					0	0	0		nc|ENSG00000155090|Q13118-3|KLF10;nc|ENSG00000155090|Q13118-4|KLF10;nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	MULTI-MSMS	HCT116MG_D190212_S2	2	995.4690551757812	1	995.468017	994.460741	0.8611	0.0008572	0.37929	0.00037757	1.2404	0.0012348	995.4682557924989	31.577	0.25948	31.328	31.147	31.406	-0.24883					9	4	3	0	0	0	0.05892	1	11656	11656		70.332	24.592	1	14286000			1594	4238	783	791	1597	1597					-0.03671119444334181
AEKSDFEAV	9	Unmodified	_AEKSDFEAV_					0	0	0		nc|ENSG00000155090|Q13118-3|KLF10;nc|ENSG00000155090|Q13118-4|KLF10;nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	MULTI-MSMS	HCT116MG_D190212_S3	3	498.23773193359375	2	498.237647	994.460741	0.34656	0.00017267	0.17578	8.7581E-05	0.52234	0.00026025	498.2377221568268	31.637	0.41697	31.367	31.169	31.586	-0.27028					16	7	4	0	0	0	0.02327	1	11566	11566		93.166	39.333	1	33412000			1595	4238	783	791	1598	1598					-0.03671119444334181
AEKSDFEAV	9	Unmodified	_AEKSDFEAV_					0	0	0		nc|ENSG00000155090|Q13118-3|KLF10;nc|ENSG00000155090|Q13118-4|KLF10;nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	MULTI-MSMS	HCT116MG_D190212_S4	4	498.2376403808594	2	498.237647	994.460741	0.36847	0.00018358	-0.037106	-1.8488E-05	0.33136	0.0001651	498.2375647110097	31.78	0.31144	31.404	31.226	31.538	-0.37529					12	5	3	0	0	0	0.032914	1	11555	11555		83.429	37.408	1	13804000			1596	4238	783	791	1599	1599					-0.03671119444334181
AEKSDFEAVE	10	Unmodified	_AEKSDFEAVE_					0	0	0		nc|ENSG00000155090|Q13118-3|KLF10;nc|ENSG00000155090|Q13118-4|KLF10;nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	MULTI-SECPEP	HCT116MG_D190212_S3	3	562.2802734375	2	562.758943	1123.50333	0.47296	0.00026616	0.15127	8.5126E-05	0.62423	0.00035129	562.7587922892698	30.165	0.21004	29.916	29.755	29.965	-0.24946					5	3	2	0	0	0	0.23445	1	10977	10977		53.317	15.141	1	2108600			1597	4238	784	792	1600	1600					-0.05347769106742817
AEKSITQVA	9	Unmodified	_AEKSITQVA_					0	0	0		ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant	ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	473.76422119140625	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.025	1	26.025	25.525	26.525	0								0	0	0	0.11662	1	9386	9386		53.404	9.5457	1				1598	2333	785	793	1601	1601					0.03817463689279066
AEKSITQVA	9	Unmodified	_AEKSITQVA_					0	0	0		ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant	ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7641906738281	2	473.763832	945.513111	0.27517	0.00013036	-0.023112	-1.095E-05	0.25205	0.00011941	473.7638530423832	26.362	0.46634	26	25.713	26.18	-0.36164					19	8	4	0	0	0	0.02327	1	9535	9535		93.166	24.061	1	66560000			1599	2333	785	793	1602	1602					0.03817463689279066
AEKSITQVA	9	Unmodified	_AEKSITQVA_					0	0	0		ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant	ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	473.76373291015625	2	473.763832	945.513111	0.33574	0.00015906	-0.10954	-5.1896E-05	0.2262	0.00010717	473.7637087990513	26.097	0.41716	25.969	25.755	26.172	-0.12795					16	7	3	0	0	0	0.02327	1	9339	9339		93.166	24.061	1	41843000			1600	2333	785	793	1603	1603					0.03817463689279066
AEKSITQVA	9	Unmodified	_AEKSITQVA_					0	0	0		ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant	ZNF451|p.T701Nfs*2|1|0.1|ENSG00000112200|chr6:57148180-57148181|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	473.7638854980469	2	473.763832	945.513111	0.28641	0.00013569	-0.005418	-2.5669E-06	0.28099	0.00013312	473.7637136356412	26.32	0.31212	26.019	25.869	26.182	-0.30087					12	5	3	0	0	0	0.026999	1	9367	9367		89.401	20.296	1	16216000			1601	2333	785	793	1604	1604					0.03817463689279066
AEKSIVKG	8	Unmodified	_AEKSIVKG_					0	0	0			REV__tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1	REV__tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	416.24859619140625	2	416.25036	830.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.06	1	29.775	29.275	30.275	-0.28453								0	0	0	0.8837	1	11036	11036		7.9102	2.6795	1		+		1602	17684	786	794	1605	1605					0.06414399868765486
AEKSRTYVA	9	Unmodified	_AEKSRTYVA_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	HCT116MG_D190212_S1	1	512.7747192382812	2	512.774731	1023.53491	0.42778	0.00021936	-0.22079	-0.00011322	0.20699	0.00010614	512.7745463262049	18.167	0.41711	18.167	17.985	18.402	0					12	7	3	0	0	0	0.0158	1	6229	6229		100.71	38.136	1	23715000			1603	1448	787	795	1606	1606					0.02408268437852712
AEKSRTYVA	9	Unmodified	_AEKSRTYVA_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7745971679688	2	512.774731	1023.53491	-0.043429	-2.2269E-05	0.33085	0.00016965	0.28743	0.00014738	512.7748333746512	18.866	0.46945	18.503	18.321	18.79	-0.36325					25	8	4	0	0	0	0.025331	1	6498	6498		91.085	41.531	1	208170000			1604	1448	787	795	1607	1607					0.02408268437852712
AEKSRTYVA	9	Unmodified	_AEKSRTYVA_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	HCT116MG_D190212_S2	2	1024.542236328125	1	1024.54219	1023.53491	0.31558	0.00032333	0.072026	7.3794E-05	0.38761	0.00039712	1024.5424307441158	18.866	0.26099	18.503	18.373	18.634	-0.36325					7	4	2	0	0	0	0.0068642	1	6521	6521		121.35	63.624	1	12694000			1605	1448	787	795	1608	1608					0.02408268437852712
AEKTEEELQP	10	Unmodified	_AEKTEEELQP_					0	0	0			REV__ENDOU|p.E76K|1|0.22|ENSG00000111405|chr12:47718147-47718147|C/T|missense_variant	REV__ENDOU|p.E76K|1|0.22|ENSG00000111405|chr12:47718147-47718147|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	587.2857055664062	2	587.285325	1172.5561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.138	1	30.877	30.377	31.377	-0.26071								0	0	0	0.94107	1	11365	11365		6.7232	0	1		+		1606	10457	788	796	1609	1609					-0.023278110439377997
AEKVAQVA	8	Unmodified	_AEKVAQVA_					0	0	0		ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	MULTI-MSMS	HCT116MG_D190212_S2	2	408.23492431640625	2	408.23471	814.454868	-0.17556	-7.1668E-05	0.18578	7.5843E-05	0.010227	4.1749E-06	408.23478644131876	20.992	0.20827	20.609	20.494	20.703	-0.38288					5	3	2	0	0	0	0.51336	1	7399	7399		39.957	11.47	1	5126900			1607	3987	789	797	1610	1610					0.04021826834662079
AEKVEKMAA	9	Unmodified	_AEKVEKMAA_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MSMS	HCT116MG_D190212_S1	1	488.7608337402344	2	488.760235	975.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.62	1	18.62	18.12	19.12	0								0	0	0	0.24105	1	6411	6411		44.392	13.124	1				1608	1313	790	798	1611	1611					0.017184078172022055
AEKVEKMAA	9	Unmodified	_AEKVEKMAA_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MULTI-MSMS	HCT116MG_D190212_S2	2	488.76025390625	2	488.760235	975.505917	0.22898	0.00011192	0.086724	4.2387E-05	0.3157	0.0001543	488.7601908949764	19.231	0.31254	18.862	18.732	19.044	-0.3695					11	5	3	0	0	0	0.012343	1	6676	6676		107.56	50.314	1	40753000			1609	1313	790	798	1612	1612					0.017184078172022055
AEKVEKMAA	9	Unmodified	_AEKVEKMAA_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MULTI-MSMS	HCT116MG_D190212_S3	3	488.76019287109375	2	488.760235	975.505917	0.012579	6.1483E-06	0.39681	0.00019395	0.40939	0.0002001	488.7602609628288	18.05	0.36417	18.127	17.997	18.361	0.076334					8	6	2	0	0	0	0.040372	1	6127	6127		79.427	31.678	1	7925700			1610	1313	790	798	1613	1613					0.017184078172022055
AEKVFMVA	8	Unmodified	_AEKVFMVA_					0	0	0		ENSG00000164051|ENST00000395694|CCDC51	ENSG00000164051|ENST00000395694|CCDC51	ENSG00000164051|ENST00000395694|CCDC51	MULTI-MSMS	HCT116MG_D190212_S2	2	447.74078369140625	2	447.741314	893.468075	0.17879	8.0051E-05	-0.30334	-0.00013582	-0.12455	-5.5768E-05	447.7408500935619	41.387	0.25622	41.319	41.191	41.447	-0.068199					6	4	2	0	0	0	0.72231	1	15668	15668		20.415	7.883	1	22863000			1611	4661	791	799	1614	1614					0.017079416223964472
AEKVFMVA	8	Unmodified	_AEKVFMVA_					0	0	0		ENSG00000164051|ENST00000395694|CCDC51	ENSG00000164051|ENST00000395694|CCDC51	ENSG00000164051|ENST00000395694|CCDC51	MSMS	HCT116MG_D190212_S3	3	447.74114990234375	2	447.741314	893.468075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.636	1	41.333	40.833	41.833	-0.30257								0	0	0	0.41781	1	15488	15488		47.749	9.5975	1				1612	4661	791	799	1615	1615					0.017079416223964472
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2645263671875	2	508.263999	1014.51345	0.22382	0.00011376	0.15554	7.9055E-05	0.37936	0.00019281	508.26419252134804	30.85	1.4441	30.583	29.581	31.025	-0.26704					38	27	2	0	0	0	0.21258	1	11420	11420		39.95	17.213	1	12502000			1613	6274	792	800	1616	1616					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.26422119140625	2	508.263999	1014.51345	0.4816	0.00024478	-0.11756	-5.9752E-05	0.36404	0.00018503	508.26394901508723	32.497	1.71	32.267	31.01	32.721	-0.23009					48	32	2	0	0	0	0.041798	1	11658	11658		78.728	42.684	1	16493000			1614	6274	792	800	1617	1617					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2648620605469	2	508.263999	1014.51345	0.63673	0.00032363	-0.29175	-0.00014829	0.34497	0.00017534	508.26398607077834	33.224	0.98476	33.026	32.753	33.738	-0.19775					27	18	2	0	0	0	0.28073	1	12387	12387		32.786	13.424	1	11460000			1615	6274	792	800	1618	1618					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2637939453125	2	508.263999	1014.51345	0.49924	0.00025375	0.011825	6.0102E-06	0.51107	0.00025976	508.26395766270167	34.325	1.4438	34.15	33.76	35.204	-0.17512					47	27	2	0	0	0	0.15273	1	13029	13029		47.749	20.865	1	265940000			1616	6274	792	800	1619	1619					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2640380859375	2	508.263999	1014.51345	0.5107	0.00025957	0.020263	1.0299E-05	0.53096	0.00026987	508.2638750940343	36.331	1.9612	36.203	35.298	37.259	-0.12799					63	37	2	0	0	0	0.090581	4	13619	13348;13601;13619;13915		60.074	33.19	1	12422000			1617	6274	792	800	1620;1621;1622;1623	1622					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	508.2638244628906	2	508.263999	1014.51345	0.19829	0.00010078	0.05373	2.7309E-05	0.25202	0.00012809	508.26408062911287	32.438	2.3308	32.16	30.34	32.671	-0.27841					57	44	2	0	0	0	0.12994	3	11238	11199;11238;11480		52.268	29.883	1	8328400			1618	6274	792	800	1624;1625;1626	1625					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	508.26385498046875	2	508.263999	1014.51345	0.19025	9.6697E-05	0.074395	3.7812E-05	0.26464	0.00013451	508.2639584282887	34.504	2.021	34.207	33.042	35.063	-0.29707					60	38	2	0	0	0	0.061422	3	12918	12456;12832;12918		69.105	40.618	1	15692000			1619	6274	792	800	1627;1628;1629	1629					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	508.76513671875	2	508.263999	1014.51345	0.045014	2.2879E-05	0.6012	0.00030557	0.64621	0.00032845	508.26432637610384	36.066	1.7041	35.766	35.482	37.186	-0.30042					55	32	3	0	0	0	0.053544	2	13224	13224;13408		72.968	40.662	1	6558200			1620	6274	792	800	1630;1631	1630					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S3	3	508.264404296875	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.294	1	27.125	26.625	27.625	-0.16933								0	0	0	0.32965	1	9830	9830		37.974	1.9298	1				1621	6274	792	800	1632	1632					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S3	3	508.263916015625	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.084	1	27.895	27.395	28.395	-0.18847								0	0	0	0.16454	1	10149	10149		49.933	15.831	1				1622	6274	792	800	1633	1633					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S3	3	508.2645568847656	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.969	1	29.733	29.233	30.233	-0.23655								0	0	0	0.61599	1	10906	10906		23.148	8.3102	1				1623	6274	792	800	1634	1634					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S3	3	508.74713134765625	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.49	1	35.191	34.691	35.691	-0.29922								0	0	0	0.1323	1	13095	13095		52.268	17.867	1				1624	6274	792	800	1635	1635					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S3	3	508.2646484375	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.67	1	35.371	34.871	35.871	-0.29922								0	0	0	0.054343	1	13155	13155		69.105	27.265	1				1625	6274	792	800	1636	1636					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S3	3	508.2638244628906	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.903	1	36.602	36.102	37.102	-0.30113								0	0	0	0.054343	1	13651	13651		69.105	27.265	1				1626	6274	792	800	1637	1637					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S3	3	508.263916015625	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.475	1	37.174	36.674	37.674	-0.30137								0	0	0	0.034054	1	13882	13882		78.728	40.754	1				1627	6274	792	800	1638	1638					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.2641296386719	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.6	1	31.229	30.729	31.729	-0.37026								0	0	0	0.1947	1	11475	11475		47.749	17.112	1				1628	6274	792	800	1639	1639					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.2642517089844	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.6	1	33.216	32.716	33.716	-0.38426								0	0	0	0.53872	1	12237	12237		26.884	4.1474	1				1629	6274	792	800	1640	1640					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.23974609375	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.805	1	33.421	32.921	33.921	-0.38426								0	0	0	0.22299	1	12319	12319		45.7	7.7256	1				1630	6274	792	800	1641	1641					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.26409912109375	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.233	1	33.847	33.347	34.347	-0.38558								0	0	0	0.49326	1	12492	12492		29.082	5.061	1				1631	6274	792	800	1642	1642					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.26416015625	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.839	1	34.453	33.953	34.953	-0.38606								0	0	0	0.099502	1	12737	12737		56.177	25.541	1				1632	6274	792	800	1643	1643					0.006768834091303688
AEKVNNFPP	9	Unmodified	_AEKVNNFPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.2644348144531	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.16	1	36.775	36.275	37.275	-0.38429								0	0	0	0.27628	1	13626	13626		41.84	14.956	1				1633	6274	792	800	1644	1644					0.006768834091303688
AEKWFLDA	8	Unmodified	_AEKWFLDA_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MSMS	HCT116MG_D190212_S3	3	490.2479248046875	2	490.247818	978.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.423	1	51.111	50.611	51.611	-0.31166								0	0	0	0.31691	1	19415	19415		53.404	7.7044	1				1634	3062	793	801	1645	1645					-0.009019039938721107
AEKYEWDVA	9	Unmodified	_AEKYEWDVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S1	1	555.7581787109375	2	555.758746	1109.50294	0.15549	8.6415E-05	0.36637	0.00020361	0.52186	0.00029003	555.7587427881028	40.82	0.25737	40.82	40.64	40.897	0					9	4	3	0	0	0	0.05892	1	15359	15359		70.332	42.703	1	21818000			1635	4945	794	802	1646	1646					-0.04743144035955993
AEKYEWDVA	9	Unmodified	_AEKYEWDVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	555.7592163085938	2	555.758746	1109.50294	0.51533	0.0002864	0.45286	0.00025168	0.96819	0.00053808	555.7589710503539	40.769	0.46467	40.699	40.519	40.984	-0.069626					17	8	3	0	0	0	0.040027	1	15385	15385		79.596	40.982	1	160190000			1636	4945	794	802	1647	1647					-0.04743144035955993
AEKYEWDVA	9	Unmodified	_AEKYEWDVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S3	3	555.7589111328125	2	555.758746	1109.50294	0.54191	0.00030117	-0.058291	-3.2396E-05	0.48362	0.00026878	555.7586147193726	41.018	0.46965	40.716	40.527	40.997	-0.30185					24	8	4	0	0	0	0.019537	1	15229	15229		96.936	53.077	1	78472000			1637	4945	794	802	1648	1648					-0.04743144035955993
AEKYEWDVA	9	Unmodified	_AEKYEWDVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S3	3	1110.5111083984375	1	1110.51022	1109.50294	0.53451	0.00059358	-0.071959	-7.9911E-05	0.46255	0.00051367	1110.5102865165395	41.012	0.26037	40.71	40.58	40.84	-0.30185					6	4	2	0	0	0	0.040027	1	15278	15278		79.596	44.664	1	3394300			1638	4945	794	802	1649	1649					-0.04743144035955993
AEKYEWDVA	9	Unmodified	_AEKYEWDVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S4	4	555.7587890625	2	555.758746	1109.50294	0.39044	0.00021699	0.16028	8.9077E-05	0.55072	0.00030607	555.7587516955947	41.159	0.30479	40.781	40.625	40.93	-0.37732					15	6	3	0	0	0	0.037825	1	15110	15110		80.676	49.408	1	40527000			1639	4945	794	802	1650	1650					-0.04743144035955993
AEKYEWDVA	9	Unmodified	_AEKYEWDVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1110.51022	1109.50294	0.7603	0.00084432	0.27008	0.00029992	1.0304	0.0011442	1110.510481922702	40.792	0.25806	40.723	40.571	40.829	-0.069626	0.0064161	0.00028902	NaN	79.596	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15822000			1640	4945	794	802							-0.04743144035955993
AEKYIMTSA	9	Unmodified	_AEKYIMTSA_					0	0	0		ENST00000461115.5_1_13:21189938-21205265:+|nuORF;ENST00000482172.5_1_13:21189938-21228047:+|nuORF;IFT88|p.K453Rfs*5|3|0.37|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant;IFT88|p.M728*|1|0.4|ENSG00000032742|chr13:20663579-20663579|A/-|frameshift_variant;IFT88|p.S746Lfs*10|1|0.3|ENSG00000032742|chr13:20670999-20671000|-/G|frameshift_variant;nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	507.2523498535156	2	507.252243	1012.48993	0.21567	0.0001094	0.19416	9.849E-05	0.40984	0.00020789	507.2524132851793	31.479	0.31325	31.208	31.064	31.378	-0.27027					8	5	2	0	0	0	0.051033	1	11519	11519		74.2	26.605	1	10934000			1641	970	795	803	1651	1651					-0.015812984196941215
AEKYIMTSA	9	Unmodified	_AEKYIMTSA_					0	0	0		ENST00000461115.5_1_13:21189938-21205265:+|nuORF;ENST00000482172.5_1_13:21189938-21228047:+|nuORF;IFT88|p.K453Rfs*5|3|0.37|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant;IFT88|p.M728*|1|0.4|ENSG00000032742|chr13:20663579-20663579|A/-|frameshift_variant;IFT88|p.S746Lfs*10|1|0.3|ENSG00000032742|chr13:20670999-20671000|-/G|frameshift_variant;nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	507.2520751953125	2	507.252243	1012.48993	0.097303	4.9357E-05	0.39262	0.00019916	0.48992	0.00024851	507.25284937928234	31.605	0.20791	31.235	31.075	31.283	-0.37026					5	3	2	0	0	0	0.19011	1	11496	11496		42.312	3.6977	1	2481900			1642	970	795	803	1652	1652					-0.015812984196941215
AEKYIMTSA	9	Unmodified	_AEKYIMTSA_					0	0	0		ENST00000461115.5_1_13:21189938-21205265:+|nuORF;ENST00000482172.5_1_13:21189938-21228047:+|nuORF;IFT88|p.K453Rfs*5|3|0.37|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant;IFT88|p.M728*|1|0.4|ENSG00000032742|chr13:20663579-20663579|A/-|frameshift_variant;IFT88|p.S746Lfs*10|1|0.3|ENSG00000032742|chr13:20670999-20671000|-/G|frameshift_variant;nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	507.252243	1012.48993	0.57646	0.00029241	0.62588	0.00031748	1.2023	0.00060989	507.252623546862	31.351	0.25862	31.102	30.94	31.198	-0.24883	-0.079918	0.00031353	NaN	74.2	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6899200			1643	970	795	803							-0.015812984196941215
AEKYQTVIA	9	Unmodified	_AEKYQTVIA_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	HCT116MG_D190212_S1	1	511.7795715332031	2	511.779482	1021.54441	0.52846	0.00027046	-0.093525	-4.7864E-05	0.43494	0.00022259	511.7793059811098	31.102	0.31257	31.102	30.919	31.232	0					8	5	2	0	0	0	0.068828	1	11441	11441		65.474	23.634	1	11114000			1644	1382	796	804	1653	1653					0.03450036723370431
AEKYQTVIA	9	Unmodified	_AEKYQTVIA_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	HCT116MG_D190212_S2	2	511.7791748046875	2	511.779482	1021.54441	0.48919	0.00025036	-0.12654	-6.476E-05	0.36265	0.0001856	511.77932556946695	31.42	0.41408	31.171	30.94	31.354	-0.24883					20	7	4	0	0	0	0.068828	1	11576	11576		65.474	5.3998	1	93574000			1645	1382	796	804	1654	1654					0.03450036723370431
AEKYQTVIA	9	Unmodified	_AEKYQTVIA_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	HCT116MG_D190212_S2	2	1022.5526123046875	1	1022.55169	1021.54441	0.90041	0.00092072	0.18144	0.00018553	1.0819	0.0011062	1022.5517146876656	31.405	0.25836	31.157	30.992	31.25	-0.24883					7	4	2	0	0	0	0.032914	1	11602	11602		83.429	27.252	1	16524000			1646	1382	796	804	1655	1655					0.03450036723370431
AEKYQTVIA	9	Unmodified	_AEKYQTVIA_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	HCT116MG_D190212_S3	3	511.7794494628906	2	511.779482	1021.54441	0.13175	6.7427E-05	0.13525	6.9218E-05	0.267	0.00013664	511.7794998444316	31.465	0.52172	31.195	31.012	31.534	-0.27028					19	9	3	0	0	0	0.068828	1	11501	11501		65.474	23.634	1	45837000			1647	1382	796	804	1656	1656					0.03450036723370431
AEKYQTVIA	9	Unmodified	_AEKYQTVIA_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	HCT116MG_D190212_S4	4	511.77960205078125	2	511.779482	1021.54441	0.13164	6.7373E-05	0.15547	7.9569E-05	0.28712	0.00014694	511.77947690868666	31.628	0.31174	31.257	31.075	31.387	-0.37026					13	5	3	0	0	0	0.040027	1	11490	11490		79.596	43.469	1	15387000			1648	1382	796	804	1657	1657					0.03450036723370431
AEKYQTVIA	9	Unmodified	_AEKYQTVIA_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1022.55169	1021.54441	0.57596	0.00058895	-0.29578	-0.00030245	0.28018	0.0002865	1022.551839169069	31.484	0.20888	31.214	31.117	31.326	-0.27028	0.02855	-0.00046214	NaN	83.429	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1865000			1649	1382	796	804							0.03450036723370431
AEKYREYEA	9	Unmodified	_AEKYREYEA_					0	0	0		METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant;nc|ENSG00000169519|A6NJ78-3|METTL15;nc|ENSG00000174912|P0C7V9|METTL15P1;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000169519|A6NJ78-4|METTL15;ENSG00000169519|ENST00000407364|METTL15	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	580.27685546875	2	579.774928	1157.5353	0.6635	0.00038468	-0.093221	-5.4047E-05	0.57028	0.00033063	580.2765326898304	20.722	0.20821	20.722	20.592	20.8	0					6	3	2	0	0	0	0.49039	1	7286	7286		17.443	1.5955	1	4637700			1650	5077	797	805	1658	1658					-0.037163566329581954
AEKYREYEA	9	Unmodified	_AEKYREYEA_					0	0	0		METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant;nc|ENSG00000169519|A6NJ78-3|METTL15;nc|ENSG00000174912|P0C7V9|METTL15P1;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000169519|A6NJ78-4|METTL15;ENSG00000169519|ENST00000407364|METTL15	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	579.7750244140625	2	579.774928	1157.5353	0.37968	0.00022013	-0.11483	-6.6574E-05	0.26485	0.00015355	579.7747869986304	21.319	0.3106	20.936	20.755	21.065	-0.38288					11	5	3	0	0	0	0.025331	1	7519	7519		91.085	43.336	1	58552000			1651	5077	797	805	1659	1659					-0.037163566329581954
AEKYREYEA	9	Unmodified	_AEKYREYEA_					0	0	0		METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant;nc|ENSG00000169519|A6NJ78-3|METTL15;nc|ENSG00000174912|P0C7V9|METTL15P1;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000169519|A6NJ78-4|METTL15;ENSG00000169519|ENST00000407364|METTL15	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	579.7750244140625	2	579.774928	1157.5353	0.32031	0.00018571	-0.0033834	-1.9616E-06	0.31692	0.00018374	579.7749365362616	20.55	0.31244	20.584	20.402	20.714	0.034473					12	5	3	0	0	0	0.013592	1	7116	7116		104.48	64.245	1	15011000			1652	5077	797	805	1660	1660					-0.037163566329581954
AEKYREYEA	9	Unmodified	_AEKYREYEA_					0	0	0		METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant;nc|ENSG00000169519|A6NJ78-3|METTL15;nc|ENSG00000174912|P0C7V9|METTL15P1;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000169519|A6NJ78-4|METTL15;ENSG00000169519|ENST00000407364|METTL15	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	386.8520812988281	3	386.852377	1157.5353	-0.18824	-7.2822E-05	0.37567	0.00014533	0.18743	7.2507E-05	386.85244674195235	20.55	0.26031	20.584	20.454	20.714	0.034473					9	4	3	0	0	0	0.37942	1	7121	7121		17.863	2.1245	1	8317400			1653	5077	797	805	1661	1661					-0.037163566329581954
AEKYREYEA	9	Unmodified	_AEKYREYEA_					0	0	0		METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant;nc|ENSG00000169519|A6NJ78-3|METTL15;nc|ENSG00000174912|P0C7V9|METTL15P1;nc|ENSG00000169519|A6NJ78-2|METTL15;nc|ENSG00000169519|A6NJ78-4|METTL15;ENSG00000169519|ENST00000407364|METTL15	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	METTL15|p.Q51Lfs*14|1|0.04|ENSG00000169519|chr11:28113485-28113486|-/TAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	579.7744140625	2	579.774928	1157.5353	0.28788	0.00016691	-0.57183	-0.00033153	-0.28395	-0.00016463	579.7745396319216	20.995	0.41508	20.785	20.604	21.019	-0.20959					10	7	2	0	0	0	0.095731	1	7225	7225		59.052	24.651	1	6689300			1654	5077	797	805	1662	1662					-0.037163566329581954
AEKYYDLAA	9	Unmodified	_AEKYYDLAA_					0	0	0		ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2562866210938	2	522.25584	1042.49713	0.47461	0.00024787	0.72227	0.00037721	1.1969	0.00062508	522.2559531187762	35.74	0.41346	35.441	35.369	35.783	-0.29922					13	9	2	0	0	0	0.12421	1	13196	13196		53.404	25.775	1	10766000			1655	5536	798	806	1663	1663					-0.022422425476406715
AEKYYDLAA	9	Unmodified	_AEKYYDLAA_					0	0	0		ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	MSMS	HCT116MG_D190212_S4	4	522.2565307617188	2	522.25584	1042.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.916	1	35.529	35.029	36.029	-0.38606								0	0	0	0.76603	1	13123	13123		14.838	4.7643	1				1656	5536	798	806	1664	1664					-0.022422425476406715
AEKYYDLAA	9	Unmodified	_AEKYYDLAA_					0	0	0		ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	522.25584	1042.49713	0.27234	0.00014223	0.19279	0.00010069	0.46513	0.00024292	522.757333418409	35.528	0.25251	35.386	35.237	35.489	-0.14245	-0.027599	-0.00021773	NaN	53.404	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13381000			1657	5536	798	806							-0.022422425476406715
AELADHQK	8	Unmodified	_AELADHQK_					0	0	0		MECOM|p.K179Nfs*9|1|0.29|ENSG00000085276|chr3:169121087-169121088|-/TTGTG|frameshift_variant;MECOM|p.S389Rfs*46|1|0.33|ENSG00000085276|chr3:169116140-169116143|CTGA/-|frameshift_variant;MECOM|p.V498Sfs*27|1|0.34|ENSG00000085276|chr3:169115816-169115817|-/T|frameshift_variant;MECOM|p.P513Qfs*15|2|0.39|ENSG00000085276|chr3:169115772-169115772|A/-|frameshift_variant;MECOM|p.G614Efs*30|5|0.4|ENSG00000085276|chr3:169115469-169115469|T/-|frameshift_variant;MECOM|p.G611Efs*33|1|0.39|ENSG00000085276|chr3:169115476-169115476|C/-|frameshift_variant;nc|ENSG00000085276|Q03112-8|MECOM;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	MECOM|p.K179Nfs*9|1|0.29|ENSG00000085276|chr3:169121087-169121088|-/TTGTG|frameshift_variant	MECOM|p.K179Nfs*9|1|0.29|ENSG00000085276|chr3:169121087-169121088|-/TTGTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	456.2325744628906	2	456.232699	910.450845	0.16856	7.6905E-05	-0.1149	-5.242E-05	0.053668	2.4485E-05	456.2325809637856	22.721	0.31195	22.336	22.206	22.518	-0.3852					11	5	3	0	0	0	0.40176	1	8069	8069		49.933	0	1	37034000			1658	1451	799	807	1665	1665					-0.007962626590483524
AELATAEKY	9	Unmodified	_AELATAEKY_					0	0	0			REV__tr|U7T3P8|U7T3P8_FUSNURibonucleaseIIIfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00208PE=4SV=1	REV__tr|U7T3P8|U7T3P8_FUSNURibonucleaseIIIfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00208PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	498.2275085449219	2	498.25584	994.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.884	1	34.498	33.998	34.998	-0.38606								0	0	0	0.76694	1	12755	12755		11.64	0.81637	1		+		1659	17955	800	808	1666	1666					-0.0003424254762194323
AELATRALP	9	Unmodified	_AELATRALP_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S1	1	471.7761535644531	2	471.274367	940.53418	0.28657	0.00013505	-0.082913	-3.9075E-05	0.20366	9.5979E-05	471.27421801091833	34.259	0.78038	34.259	34.076	34.857	0					21	14	2	0	0	0	0.051033	1	12717	12717		74.2	0	1	21003000			1660	5303	801	809	1667	1667					0.061534737887996016
AELATRALP	9	Unmodified	_AELATRALP_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	471.2742614746094	2	471.274367	940.53418	0.44095	0.00020781	-0.93649	-0.00044134	-0.49554	-0.00023354	471.2742345990703	34.48	1.0873	34.305	33.812	34.899	-0.17511					48	20	3	0	0	0	0.016412	2	12783	12783;13030		100.09	0	1	120280000			1661	5303	801	809	1668;1669	1668					0.061534737887996016
AELATRALP	9	Unmodified	_AELATRALP_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	941.5427856445312	1	941.541457	940.53418	0.87569	0.0008245	0.027613	2.5999E-05	0.90331	0.0008505	941.5408543831686	34.454	0.51717	34.279	34.072	34.589	-0.17512					13	9	2	0	0	0	0.012531	1	12838	12838		107.1	0	1	12087000			1662	5303	801	809	1670	1670					0.061534737887996016
AELATRALP	9	Unmodified	_AELATRALP_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	471.2747802734375	2	471.274367	940.53418	0.18209	8.5813E-05	0.35068	0.00016527	0.53277	0.00025108	471.2744136068972	35.415	0.70982	35.272	35.036	35.746	-0.14245					28	13	3	0	0	0	0.026272	1	13267	13267		90.135	0	1	88098000			1663	5303	801	809	1671	1671					0.061534737887996016
AELATRALP	9	Unmodified	_AELATRALP_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S3	3	941.5411376953125	1	941.541457	940.53418	0.39805	0.00037478	-0.25151	-0.0002368	0.14655	0.00013798	941.541228036858	34.632	0.46756	34.335	34.129	34.596	-0.29707					12	8	2	0	0	0	0.019537	1	12780	12780		96.936	0	1	3305600			1664	5303	801	809	1672	1672					0.061534737887996016
AELATRALP	9	Unmodified	_AELATRALP_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S4	4	471.2748107910156	2	471.274367	940.53418	0.44034	0.00020752	0.78169	0.00036839	1.222	0.00057591	471.27463113890974	35.743	0.71007	35.356	35.208	35.918	-0.38605					72	33	3	0	0	0	0.016412	1	13081	13081		100.09	0	1	23091000			1665	5303	801	809	1673	1673					0.061534737887996016
AELATRALP	9	Unmodified	_AELATRALP_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	471.274367	940.53418	0.36106	0.00017016	-0.21464	-0.00010116	0.14642	6.9003E-05	471.2741702047827	35.345	0.46635	35.345	35.163	35.63	0	0.020597	-0.00053821	NaN	100.09	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10778000			1666	5303	801	809							0.061534737887996016
AELAVAPP	8	Unmodified	_AELAVAPP_					0	0	0		ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	HCT116MG_D190212_S2	2	767.8609619140625	1	767.429781	766.422505	0.88723	0.00068088	-0.42516	-0.00032628	0.46207	0.0003546	767.4290271269605	38.655	0.26208	38.57	38.492	38.754	-0.084618					6	4	2	0	0	0	0.13911	2	14544	14544;14553		86.121	15.257	1	16024000			1667	2844	802	810	1674;1675	1674					0.029950394316642814
AELDEKISA	9	Unmodified	_AELDEKISA_					0	0	0		nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	MSMS	HCT116MG_D190212_S3	3	488.25384521484375	2	488.253297	974.492041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.472	1	30.223	29.723	30.723	-0.24946								0	0	0	0.04525	1	11101	11101		71.708	12.34	1				1668	4108	803	811	1676	1676					0.0037745358976053467
AELDHHWV	8	Unmodified	_AELDHHWV_					0	0	0		ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	MULTI-MSMS	HCT116MG_D190212_S2	2	503.7403564453125	2	503.740691	1005.46683	0.32638	0.00016441	-1.0653	-0.00053661	-0.73888	-0.0003722	503.7401160837245	11.91	0.26419	11.621	11.487	11.751	-0.28953					14	10	2	0	0	0	0.78216	1	3866	3866		13.508	0.97634	1	723860			1669	6033	804	812	1677	1677					-0.03568556422146685
AELDIKRILHN	11	Unmodified	_AELDIKRILHN_					0	0	0			REV__ENSG00000196865|ENST00000369301|NHLRC2	REV__ENSG00000196865|ENST00000369301|NHLRC2	MSMS	HCT116MG_D190212_S1	1	661.3843383789062	2	661.382968	1320.75138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.54	1	21.54	21.04	22.04	0								0	0	0	0.95196	1	7582	7582		5.2969	2.3016	1		+		1670	14050	805	813	1678	1678					0.1038382427157103
AELDKVMGP	9	Unmodified	_AELDKVMGP_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	HCT116MG_D190212_S3	3	480.2613525390625	2	480.24696	958.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.054	1	34.757	34.257	35.257	-0.29707								0	0	0	0.22243	1	12925	12925		45.74	11.338	1				1671	1269	806	814	1679	1679					-0.0015328107411960445
AELDLTGPAA	10	Unmodified	_AELDLTGPAA_					0	0	0			REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	479.248046875	2	479.248015	956.481476	0.29258	0.00014022	0.19441	9.317E-05	0.48699	0.00023339	479.24809864689144	27.731	0.67636	27.543	27.309	27.985	-0.18847					20	12	2	0	0	0	0.40515	1	10169	10169		41.84	14.956	1	6341300	+		1672	10745	807	815	1680	1680					0.0014947093532100553
AELDLTGPAA	10	Unmodified	_AELDLTGPAA_					0	0	0			REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	479.248015	956.481476	0.21393	0.00010252	0.40578	0.00019447	0.61971	0.00029699	479.2482403758308	27.766	0.51496	27.424	27.243	27.758	-0.34201	-0.099046	9.9998E-05	NaN	41.84	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10275000	+		1673	10745	807	815							0.0014947093532100553
AELDQKKDI	9	Unmodified	_AELDQKKDI_					0	0	0			REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2877807617188	2	530.287671	1058.56079	0.46147	0.00024471	-0.34674	-0.00018387	0.11473	6.0838E-05	530.2877003399111	32.719	0.26091	32.508	32.325	32.586	-0.21135					6	4	2	0	0	0	0.13316	1	12120	12120		51.63	7.8574	1	38535000	+		1674	10150	808	816	1681	1681					0.03385117889456524
AELDQKKDI	9	Unmodified	_AELDQKKDI_					0	0	0			REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2880859375	2	530.287671	1058.56079	0.53609	0.00028428	-0.0049178	-2.6078E-06	0.53117	0.00028167	530.2876753624655	32.873	0.20755	32.494	32.364	32.572	-0.37924					6	3	2	0	0	0	0.047849	1	11995	11995		75.761	2.7929	1	8987500	+		1675	10150	808	816	1682	1682					0.03385117889456524
AELDQKKDI	9	Unmodified	_AELDQKKDI_					0	0	0			REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	530.287671	1058.56079	0.46147	0.00024471	-0.34674	-0.00018387	0.11473	6.0838E-05	530.2877003399111	32.719	0.26091	32.508	32.325	32.586	-0.21135	0.01296	-0.00025875	NaN	75.761	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38535000	+		1676	10150	808	816							0.03385117889456524
AELDQKKDI	9	Unmodified	_AELDQKKDI_					0	0	0			REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	530.287671	1058.56079	0.53609	0.00028428	-0.0049178	-2.6078E-06	0.53117	0.00028167	530.2876753624655	32.873	0.20755	32.494	32.364	32.572	-0.37924	-0.00037476	0.00010378	NaN	75.761	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8987500	+		1677	10150	808	816							0.03385117889456524
AELDSTWRA	9	Unmodified	_AELDSTWRA_					0	0	0		APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant;nc|ENSG00000115266|O95996-2|APC2;nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2	APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	524.7562866210938	2	524.756538	1047.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.27	1	36.968	36.468	37.468	-0.30137								0	0	0	0.34207	1	13799	13799		37.075	2.6729	1				1678	157	809	817	1683	1683					-0.023326084588461526
AELEAQLVQA	10	Unmodified	_AELEAQLVQA_					0	0	0		ENST00000580738.5_1_17:8339285-8349209:+|nuORF;nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1	ENST00000580738.5_1_17:8339285-8349209:+|nuORF	ENST00000580738.5_1_17:8339285-8349209:+|nuORF	MSMS	HCT116MG_D190212_S3	3	536.28759765625	2	536.287671	1070.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.595	1	42.292	41.792	42.792	-0.30352								0	0	0	0.90291	1	15872	15872		15.248	5.1746	1				1679	4868	810	818	1684	1684					0.028331178894632103
AELEDLRQRL	10	Unmodified	_AELEDLRQRL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MSMS	HCT116MG_D190212_S3	3	621.84375	2	621.843676	1241.6728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.056	1	23.995	23.495	24.495	-0.061449								0	0	0	0.88085	1	8524	8524		18.373	0	1				1680	4264	811	819	1685	1685					0.06162971966477926
AELEEKGHSA	10	Unmodified	_AELEEKGHSA_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	HCT116MG_D190212_S2	2	535.7589721679688	2	535.759278	1069.504	0.4545	0.0002435	-1.5219	-0.00081539	-1.0674	-0.00057189	535.7584374301412	16.632	0.31226	16.29	16.152	16.464	-0.34183					8	5	2	0	0	0	0.20425	1	5635	5635		59.052	24.12	1	5596500			1681	4091	812	820	1686	1686					-0.027969296670335098
AELEFAIQP	9	Unmodified	_AELEFAIQP_					0	0	0		ENSG00000092820|ENST00000367075|EZR;RDX|p.F45Lfs*6|1|0.23|ENSG00000137710|chr11:110264836-110264836|A/-|frameshift_variant;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;nc|ENSG00000137710|P35241-3|RDX;RDX|p.G213Efs*6|1|0.09|ENSG00000137710|chr11:110257829-110257829|T/-|frameshift_variant;MSN|p.P297Afs*2|1|0.34|ENSG00000147065|chrX:65735356-65735357|-/A|frameshift_variant;ENSG00000147065|ENST00000360270|MSN;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX	ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX	ENSG00000092820|ENST00000367075|EZR	MSMS	HCT116MG_D190212_S1	1	509.2658996582031	2	509.266207	1016.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.314	1	53.314	52.814	53.814	0								0	0	0	0.07135	1	20415	20415		64.236	28.109	1				1682	1586;3495	813	821	1687	1687					0.010263478320553077
AELEGKIQ	8	Unmodified	_AELEGKIQ_					0	0	0		CON__A2AB72	CON__A2AB72	CON__A2AB72	MULTI-MSMS	HCT116MG_D190212_S2	2	444.24493408203125	2	444.245275	886.475997	-0.08799	-3.9089E-05	0.16004	7.1099E-05	0.072054	3.201E-05	444.24523847897984	30.492	0.56617	30.208	30.028	30.594	-0.28453					20	10	3	0	0	0	0.33298	1	11325	11325		56.177	3.9087	1	219280000		+	1683	535	814	822	1688	1688					0.028217921435384596
AELEGKIQ	8	Unmodified	_AELEGKIQ_					0	0	0		CON__A2AB72	CON__A2AB72	CON__A2AB72	MULTI-MSMS	HCT116MG_D190212_S3	3	444.2452697753906	2	444.245275	886.475997	0.072452	3.2186E-05	0.020772	9.2281E-06	0.093224	4.1414E-05	444.24509656376927	30.502	0.7146	30.253	30.162	30.876	-0.24946					37	24	2	0	0	0	0.33298	1	11231	11231		56.177	3.9087	1	72339000		+	1684	535	814	822	1689	1689					0.028217921435384596
AELEGKIQ	8	Unmodified	_AELEGKIQ_					0	0	0		CON__A2AB72	CON__A2AB72	CON__A2AB72	MULTI-MSMS	HCT116MG_D190212_S4	4	444.2450866699219	2	444.245275	886.475997	0.23051	0.0001024	-0.14103	-6.2651E-05	0.089482	3.9752E-05	444.24510138412217	30.684	0.71609	30.32	30.21	30.926	-0.36416					27	18	2	0	0	0	0.24264	1	11218	11218		65.235	12.967	1	23516000		+	1685	535	814	822	1690	1690					0.028217921435384596
AELEGKIQ	8	Unmodified	_AELEGKIQ_					0	0	0		CON__A2AB72	CON__A2AB72	CON__A2AB72	MULTI-MATCH	HCT116MG_D190212_S1	1		2	444.245275	886.475997	0.093278	4.1438E-05	-0.38024	-0.00016892	-0.28696	-0.00012748	444.244830023307	30.373	0.25919	30.373	30.244	30.503	0	0.084881	-0.0003184	NaN	65.235	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2834500		+	1686	535	814	822							0.028217921435384596
AELEHGSSA	9	Unmodified	_AELEHGSSA_					0	0	0		ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	MULTI-MSMS	HCT116MG_D190212_S1	1	450.7064514160156	2	450.706514	899.398475	0.1736	7.8242E-05	-0.052582	-2.3699E-05	0.12102	5.4543E-05	450.70641271237713	16.968	0.20877	16.968	16.837	17.046	0					5	3	2	0	0	0	0.027492	1	5751	5751		88.904	40.558	1	4914900			1687	6469	815	823	1691	1691					-0.055248457926495576
AELEHGSSA	9	Unmodified	_AELEHGSSA_					0	0	0		ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	MULTI-MSMS	HCT116MG_D190212_S2	2	450.70648193359375	2	450.706514	899.398475	0.1501	6.7649E-05	0.16034	7.2268E-05	0.31044	0.00013992	450.70643373998934	17.354	0.41807	17.004	16.821	17.239	-0.34933					15	7	4	0	0	0	0.020181	1	5903	5903		96.285	38.813	1	27310000			1688	6469	815	823	1692	1692					-0.055248457926495576
AELEHGSSA	9	Unmodified	_AELEHGSSA_					0	0	0		ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	MULTI-MSMS	HCT116MG_D190212_S2	2	900.4058837890625	1	900.405751	899.398475	0.9797	0.00088212	-0.088164	-7.9384E-05	0.89153	0.00080274	900.4054384906715	17.353	0.26147	17.004	16.873	17.135	-0.34933					6	4	2	0	0	0	0.0066233	1	5910	5910		123.45	68.677	1	8017700			1689	6469	815	823	1693	1693					-0.055248457926495576
AELEHLRQA	9	Unmodified	_AELEHLRQA_					0	0	0		ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	MSMS	HCT116MG_D190212_S2	2	533.7857666015625	2	533.78563	1065.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.038	1	24.663	24.163	25.163	-0.37521								0	0	0	0.31255	1	8999	8999		41.956	9.1699	1				1690	4350	816	824	1694	1694					0.026550731864290356
AELEHLRQA	9	Unmodified	_AELEHLRQA_					0	0	0		ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	MULTI-MSMS	HCT116MG_D190212_S3	3	533.7857055664062	2	533.78563	1065.55671	0.43926	0.00023447	0.002681	1.4311E-06	0.44194	0.0002359	533.7854564546843	24.503	0.26055	24.419	24.289	24.549	-0.083694					8	4	3	0	0	0	0.095931	1	8730	8730		71.708	5.2512	1	6943600			1691	4350	816	824	1695	1695					0.026550731864290356
AELEHLRQA	9	Unmodified	_AELEHLRQA_					0	0	0		ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	MULTI-MSMS	HCT116MG_D190212_S4	4	533.7860107421875	2	533.78563	1065.55671	0.61234	0.00032686	-0.056981	-3.0416E-05	0.55536	0.00029645	533.7855734829361	24.792	0.25972	24.523	24.445	24.705	-0.26881					5	4	2	0	0	0	0.16686	1	8780	8780		47.732	12.8	1	4201400			1692	4350	816	824	1696	1696					0.026550731864290356
AELEKHMAA	9	Oxidation (M)	_AELEKHM(Oxidation (M))AA_		AELEKHM(1)AA		AELEKHM(70)AA	0	0	1		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	508.24798583984375	2	508.247492	1014.48043	0.3893	0.00019786	-0.32846	-0.00016694	0.060841	3.0922E-05	508.24739116463786	15.713	0.20815	15.713	15.588	15.796	0					7	3	3	0	0	0	0.05892	1	5251	5251		70.332	14.155	1	4301400			1693	2909	817	825	1697	1697		65			-0.026230667052118406
AELEKHMAA	9	Oxidation (M)	_AELEKHM(Oxidation (M))AA_		AELEKHM(1)AA		AELEKHM(53)AA	0	0	1		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2477722167969	2	508.247492	1014.48043	0.27935	0.00014198	0.17671	8.981E-05	0.45606	0.00023179	508.2475390846329	15.998	0.41772	15.663	15.376	15.794	-0.33451					11	7	2	0	0	0	0.12421	1	5355	5355		53.404	13.454	1	9702300			1694	2909	817	825	1698	1698		65			-0.026230667052118406
AELEKHMAA	9	Unmodified	_AELEKHMAA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	500.2506103515625	2	500.250034	998.485516	0.52708	0.00026367	-0.018256	-9.1323E-06	0.50882	0.00025454	500.2499574305843	20.805	0.31274	20.805	20.644	20.956	0					11	5	3	0	0	0	0.016412	1	7292	7292		100.09	50.158	1	25979000			1695	2909	817	826	1699	1699					-0.013787628426030096
AELEKHMAA	9	Unmodified	_AELEKHMAA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	500.25018310546875	2	500.250034	998.485516	0.33494	0.00016755	1.5844	0.00079259	1.9193	0.00096014	500.2500420621381	21.422	0.36239	21.039	20.859	21.221	-0.38288					23	6	6	0	0	0	0.016412	1	7539	7539		100.09	54.07	1	247650000			1696	2909	817	826	1700	1700					-0.013787628426030096
AELEKHMAA	9	Unmodified	_AELEKHMAA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	500.2500915527344	2	500.250034	998.485516	0.32703	0.0001636	0.045205	2.2614E-05	0.37224	0.00018621	500.2500376051175	20.55	0.36441	20.584	20.454	20.818	0.034473					13	6	3	0	0	0	0.016412	1	7117	7117		100.09	54.07	1	46548000			1697	2909	817	826	1701	1701					-0.013787628426030096
AELEKHMAA	9	Unmodified	_AELEKHMAA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;ENST00000468428.1_1_20:17600178-17600424:-|nuORF	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S4	4	500.2501220703125	2	500.250034	998.485516	0.41879	0.0002095	-0.14525	-7.2663E-05	0.27354	0.00013684	500.249964445008	20.943	0.25933	20.734	20.604	20.863	-0.20959					9	4	3	0	0	0	0.026272	1	7210	7210		90.135	44.114	1	6947000			1698	2909	817	826	1702	1702					-0.013787628426030096
AELEKSSAA	9	Unmodified	_AELEKSSAA_					0	0	0		HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;nc|ENSG00000072571|O75330-4|HMMR;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	453.2324523925781	2	453.232364	904.450176	0.085194	3.8612E-05	0.19343	8.7668E-05	0.27862	0.00012628	453.23237360180093	17.928	0.62645	17.571	17.127	17.754	-0.35647					17	11	3	0	0	0	0.01386	1	6132	6132		103.82	28.895	1	21503000			1699	1273	818	827	1703	1703					-0.005871020987569864
AELEKSSAA	9	Unmodified	_AELEKSSAA_					0	0	0		HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;nc|ENSG00000072571|O75330-4|HMMR;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	905.4581909179688	1	905.457453	904.450176	0.72516	0.0006566	0.33502	0.00030335	1.0602	0.00095995	905.4577295202939	17.928	0.20905	17.571	17.441	17.65	-0.35647					6	3	2	0	0	0	0.012531	1	6147	6147		107.1	21.458	1	7287500			1700	1273	818	827	1704	1704					-0.005871020987569864
AELEKSSAA	9	Unmodified	_AELEKSSAA_					0	0	0		HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;nc|ENSG00000072571|O75330-4|HMMR;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	453.232364	904.450176	0.3242	0.00014694	-0.015421	-6.9894E-06	0.30878	0.00013995	453.23230833288073	17.489	0.31314	17.489	17.255	17.568	0	-0.040897	-0.00014856	NaN	103.82	8	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3023600			1701	1273	818	827							-0.005871020987569864
AELELERAR	9	Unmodified	_AELELERAR_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-MSMS	HCT116MG_D190212_S2	2	543.7990112304688	2	543.798737	1085.58292	0.37358	0.00020315	0.0086367	4.6966E-06	0.38222	0.00020785	543.798961150503	21.89	0.3126	21.505	21.271	21.583	-0.38503					9	5	3	0	0	0	0.37942	1	7758	7758		23.79	0	1	11091000	+		1702	11326	819	828	1705	1705					0.043553423578941874
AELENLIRER	10	Unmodified	_AELENLIRER_					0	0	0		ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323	ENSG00000131738|ENST00000251646|KRT33B	ENSG00000131738|ENST00000251646|KRT33B	MULTI-SECPEP	HCT116MG_D190212_S2	2	415.2137145996094	3	414.89821	1241.6728	0.057583	2.3891E-05	-0.88718	-0.00036809	-0.82959	-0.0003442	414.8979732364528	24.489	0.2608	24.108	23.979	24.239	-0.38003					5	4	2	0	0	0	0.28645	1	8779	8779		29.281	8.41	1	4870200		+	1703	542	820	829	1706	1706					0.061629719664551885
AELENLVNQAA	11	Unmodified	_AELENLVNQAA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	586.3012084960938	2	586.30131	1170.58807	0.49502	0.00029023	-0.10036	-5.8839E-05	0.39467	0.00023139	586.3011810489135	44.676	0.20832	44.676	44.516	44.724	0					6	3	2	0	0	0	0.61797	1	16924	16924		33.445	19.04	1	10950000			1704	3431	821	830	1707	1707					0.009596014298722366
AELENLVNQAA	11	Unmodified	_AELENLVNQAA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	586.3018798828125	2	586.30131	1170.58807	0.77797	0.00045613	0.049847	2.9225E-05	0.82782	0.00048535	586.3013414183531	44.75	0.41792	44.665	44.428	44.846	-0.084797					14	7	3	0	0	0	0.0027806	1	17003	17003		148.27	104.5	1	52587000			1705	3431	821	830	1708	1708					0.009596014298722366
AELENLVNQAA	11	Unmodified	_AELENLVNQAA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MSMS	HCT116MG_D190212_S3	3	586.3019409179688	2	586.30131	1170.58807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.938	1	44.629	44.129	45.129	-0.30927								0	0	0	0.00046302	1	16811	16811		107.1	78.018	1				1706	3431	821	830	1709	1709					0.009596014298722366
AELEPGVAEP	10	Unmodified	_AELEPGVAEP_					0	0	0			REV__PWWP2A|p.A270Efs*45|1|0.04|ENSG00000170234|chr5:160093841-160093842|-/TAGTGCAACTGACT|frameshift_variant;REV__PWWP2A|p.E335Gfs*3|1|0.22|ENSG00000170234|chr5:160093648-160093649|-/T|frameshift_variant	REV__PWWP2A|p.A270Efs*45|1|0.04|ENSG00000170234|chr5:160093841-160093842|-/TAGTGCAACTGACT|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	505.7610778808594	2	506.253297	1010.49204	0.36455	0.00018456	-0.077692	-3.9332E-05	0.28686	0.00014522	506.2529039057877	24.857	0.31197	24.773	24.549	24.861	-0.083694					9	5	3	0	0	0	0.22544	1	8867	8867		52.268	6.5687	1	5655300	+		1707	17458;13283	822	831	1710	1710					-0.012785464102307742
AELEQNECQ	9	Unmodified	_AELEQNECQ_					0	0	0			REV__ENST00000470452.5_1_2:237994547-238002319:+|nuORF	REV__ENST00000470452.5_1_2:237994547-238002319:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	532.7725219726562	2	532.221671	1062.42879	0.11997	6.385E-05	2.5105	0.0013361	2.6304	0.0014	532.2228969060446	43.13	0.61786	43.056	42.84	43.458	-0.073372					17	11	2	0	0	0	0.21474	1	16282	16282		17.113	0	1	13831000	+		1708	10282	823	832	1711	1711					-0.09992855189784677
AELEREGAP	9	Unmodified	_AELEREGAP_					0	0	0			REV__ENSG00000186150|ENST00000334179|UBL4B	REV__ENSG00000186150|ENST00000334179|UBL4B	MULTI-MSMS	HCT116MG_D190212_S3	3	486.24884033203125	2	486.243264	970.471974	0.12929	6.2864E-05	0.30583	0.00014871	0.43512	0.00021157	486.24325467805045	19.821	0.41669	19.881	19.646	20.063	0.05983					14	7	3	0	0	0	0.39063	1	6726	6726		23.148	1.4018	1	10835000	+		1709	13878	824	833	1712	1712					-0.01444297350190027
AELERLAAE	9	Unmodified	_AELERLAAE_					0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	HCT116MG_D190212_S3	3	501.2669677734375	2	501.266739	1000.51892	0.53281	0.00026708	-0.4253	-0.00021319	0.10752	5.3894E-05	501.26652851288924	28.461	0.31271	28.255	28.125	28.437	-0.20593					8	5	2	0	0	0	0.05892	1	10325	10325		70.332	12.61	1	9334200	+		1710	12100	825	834	1713	1713					0.018685622009456893
AELETDIRA	9	Unmodified	_AELETDIRA_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	HCT116MG_D190212_S1	1	509.2641906738281	2	509.264196	1016.51384	0.54342	0.00027674	-0.032419	-1.651E-05	0.511	0.00026023	509.2643692428845	33.219	0.25871	33.219	33.089	33.348	0					5	4	2	0	0	0	0.13424	2	12304	12304;12332		51.415	7.6428	1	4960700			1711	1756	826	835	1714;1715	1714					0.006242583383254896
AELETDIRA	9	Unmodified	_AELETDIRA_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	HCT116MG_D190212_S2	2	509.26446533203125	2	509.264196	1016.51384	0.67901	0.00034579	0.01953	9.946E-06	0.69854	0.00035574	509.2641422704822	33.419	0.30806	33.226	33.019	33.327	-0.19297					9	5	3	0	0	0	0.13424	1	12419	12419		51.415	7.6428	1	19603000			1712	1756	826	835	1716	1716					0.006242583383254896
AELETELQA	9	Unmodified	_AELETELQA_					0	0	0		KIF4A|p.I912L|1|0.07|ENSG00000090889|chrX:70403978-70403978|A/C|missense_variant	KIF4A|p.I912L|1|0.07|ENSG00000090889|chrX:70403978-70403978|A/C|missense_variant	KIF4A|p.I912L|1|0.07|ENSG00000090889|chrX:70403978-70403978|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	502.2511901855469	2	502.250754	1002.48696	0.37277	0.00018722	-0.77553	-0.00038951	-0.40275	-0.00020228	502.2506719752474	38.437	0.31086	38.136	37.885	38.196	-0.30137					9	5	2	0	0	0	0.23138	1	14246	14246		37.974	0	1	2290500			1713	9267	827	836	1717	1717					-0.01418850272864347
AELETELQA	9	Unmodified	_AELETELQA_					0	0	0		KIF4A|p.I912L|1|0.07|ENSG00000090889|chrX:70403978-70403978|A/C|missense_variant	KIF4A|p.I912L|1|0.07|ENSG00000090889|chrX:70403978-70403978|A/C|missense_variant	KIF4A|p.I912L|1|0.07|ENSG00000090889|chrX:70403978-70403978|A/C|missense_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	502.250754	1002.48696	0.26732	0.00013426	-1.6364	-0.00082189	-1.3691	-0.00068763	502.24969224901884	38.193	0.3098	38.1	37.857	38.167	-0.09301	-0.018057	-0.0005134	NaN	37.974	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7322900			1714	9267	827	836							-0.01418850272864347
AELEWKKYFI	10	Unmodified	_AELEWKKYFI_					0	0	0			REV__nc|ENSG00000102854|Q13421-4|MSLN	REV__nc|ENSG00000102854|Q13421-4|MSLN	MSMS	HCT116MG_D190212_S1	1	442.86279296875	3	442.907934	1325.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.228	1	15.228	14.728	15.728	0								0	0	0	0.95511	1	5044	5044		3.5871	0.74377	1		+		1715	11163	828	837	1718	1718					0.05215116262752417
AELEWKKYFI	10	Unmodified	_AELEWKKYFI_					0	0	0			REV__nc|ENSG00000102854|Q13421-4|MSLN	REV__nc|ENSG00000102854|Q13421-4|MSLN	MSMS	HCT116MG_D190212_S1	1	442.7637023925781	3	442.907934	1325.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.699	1	15.699	15.199	16.199	0								0	0	0	0.96183	1	5234	5234		2.086	0.63089	1		+		1716	11163	828	837	1719	1719					0.05215116262752417
AELFIKAK	8	Unmodified	_AELFIKAK_					0	0	0			REV__tr|U7STJ5|U7STJ5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01507PE=3SV=1	REV__tr|U7STJ5|U7STJ5_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01507PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	460.2844543457031	2	460.284203	918.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.366	1	15.366	14.866	15.866	0								0	0	0	0.8837	1	5099	5099		5.2307	0	1		+		1717	17802	829	838	1720	1720					0.09131849799564407
AELGMEHQA	9	Unmodified	_AELGMEHQA_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA;ENST00000586280.1_1_19:13041410-13044450:-|nuORF;FARSA|p.G146Dfs*14|1|0.44|ENSG00000179115|chr19:12930289-12930289|C/-|frameshift_variant;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MSMS	HCT116MG_D190212_S1	1	493.22479248046875	2	493.224017	984.43348	0.28477	0.00014046	0.67223	0.00033156	0.957	0.00047202	493.224377194879	25.535	0.31314	25.535	25.353	25.666	0					8	5	2	0	0	0	0.082877	1	9198	9198		61.602	9.3336	1	8045800			1718	5537	830	839	1721	1721					-0.059359262563589255
AELGMEHQA	9	Unmodified	_AELGMEHQA_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA;ENST00000586280.1_1_19:13041410-13044450:-|nuORF;FARSA|p.G146Dfs*14|1|0.44|ENSG00000179115|chr19:12930289-12930289|C/-|frameshift_variant;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MSMS	HCT116MG_D190212_S2	2	493.22418212890625	2	493.224017	984.43348	0.47009	0.00023186	0.010591	5.2237E-06	0.48068	0.00023708	493.22391188161646	25.945	0.36405	25.576	25.394	25.758	-0.36914					14	6	3	0	0	0	0.012596	1	9367	9367		106.94	48.261	1	96840000			1719	5537	830	839	1722	1722					-0.059359262563589255
AELGMEHQA	9	Unmodified	_AELGMEHQA_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA;ENST00000586280.1_1_19:13041410-13044450:-|nuORF;FARSA|p.G146Dfs*14|1|0.44|ENSG00000179115|chr19:12930289-12930289|C/-|frameshift_variant;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MSMS	HCT116MG_D190212_S3	3	493.2240295410156	2	493.224017	984.43348	0.32138	0.00015851	0.0048812	2.4075E-06	0.32626	0.00016092	493.22396296906703	25.695	0.46888	25.567	25.39	25.859	-0.12795					24	8	4	0	0	0	0.012596	1	9169	9169		106.94	31.179	1	57189000			1720	5537	830	839	1723	1723					-0.059359262563589255
AELGMEHQA	9	Unmodified	_AELGMEHQA_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA;ENST00000586280.1_1_19:13041410-13044450:-|nuORF;FARSA|p.G146Dfs*14|1|0.44|ENSG00000179115|chr19:12930289-12930289|C/-|frameshift_variant;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MSMS	HCT116MG_D190212_S4	4	493.22412109375	2	493.224017	984.43348	0.2431	0.0001199	-0.11805	-5.8224E-05	0.12505	6.1677E-05	493.22397691735694	25.932	0.31221	25.642	25.464	25.776	-0.29022					12	5	3	0	0	0	0.0055242	1	9201	9201		133.05	67.817	1	19471000			1721	5537	830	839	1724	1724					-0.059359262563589255
AELGPSPPAP	10	Unmodified	_AELGPSPPAP_					0	0	0		ENSG00000149823|ENST00000279281|VPS51;nc|ENSG00000149823|Q9UID3-2|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MSMS	HCT116MG_D190212_S4	4	468.3336181640625	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.024	1	25.734	25.234	26.234	-0.29022								0	0	0	0.86471	1	9251	9251		20.454	1.1966	1				1722	4074	831	840	1725	1725					0.006137921435083626
AELGRPCL	8	Carbamidomethyl (C)	_AELGRPC(Carbamidomethyl (C))L_	AELGRPC(1)L		AELGRPC(44)L		0	1	0			REV__nc|ENSG00000136444|Q9HA92-2|RSAD1	REV__nc|ENSG00000136444|Q9HA92-2|RSAD1	MULTI-MSMS	HCT116MG_D190212_S4	4	458.23919677734375	2	458.23947	914.464386	0.11618	5.3237E-05	-0.25805	-0.00011825	-0.14187	-6.501E-05	458.2391881576473	30.73	0.20612	30.366	30.307	30.513	-0.36416					6	4	2	0	0	0	0.46892	1	11140	11140		43.858	7.7313	1	2844600	+		1723	17140	832	841	1726	1726	65				0.003732718485252917
AELGRPCL	8	Carbamidomethyl (C)	_AELGRPC(Carbamidomethyl (C))L_					0	1	0			REV__nc|ENSG00000136444|Q9HA92-2|RSAD1	REV__nc|ENSG00000136444|Q9HA92-2|RSAD1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	458.23947	914.464386	-0.10473	-4.7993E-05	-0.19754	-9.052E-05	-0.30227	-0.00013851	458.2392831335643	30.492	0.25643	30.208	30.13	30.387	-0.28453	-0.079289	1.2623E-05	NaN	43.858	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10846000	+		1724	17140	832	841			65				0.003732718485252917
AELGRPCL	8	Carbamidomethyl (C)	_AELGRPC(Carbamidomethyl (C))L_					0	1	0			REV__nc|ENSG00000136444|Q9HA92-2|RSAD1	REV__nc|ENSG00000136444|Q9HA92-2|RSAD1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	458.23947	914.464386	0.11618	5.3237E-05	-0.25805	-0.00011825	-0.14187	-6.501E-05	458.2391881576473	30.73	0.20612	30.366	30.307	30.513	-0.36416	0.079289	-4.2831E-05	NaN	43.858	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2844600	+		1725	17140	832	841			65				0.003732718485252917
AELIHQIEA	9	Unmodified	_AELIHQIEA_					0	0	0		CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant;CEP290|p.L2448Tfs*8|1|0.11|ENSG00000198707|chr12:88049282-88049283|-/T|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290	CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant	CEP290|p.I2385*|1|0.37|ENSG00000198707|chr12:88050410-88050410|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	512.278076171875	2	512.277106	1022.53966	0.18371	9.4109E-05	0.82207	0.00042113	1.0058	0.00051524	512.2777200054246	38.274	0.20712	37.972	37.833	38.04	-0.30137					7	3	3	0	0	0	0.15281	1	14199	14199		47.732	9.5564	1	4179100			1726	407	833	842	1727	1727					0.029291525806115715
AELISPTSPL	10	Unmodified	_AELISPTSPL_					0	0	0		ENST00000589204.1_1_18:56196243-56204256:-|nuORF;ENSG00000198796|ENST00000361673|ALPK2	ENST00000589204.1_1_18:56196243-56204256:-|nuORF	ENST00000589204.1_1_18:56196243-56204256:-|nuORF	MSMS	HCT116MG_D190212_S4	4	514.2859497070312	2	514.28714	1026.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.862	1	31.486	30.986	31.986	-0.37529								0	0	0	0.92607	1	11581	11581		10.074	0	1				1727	6275	834	843	1728	1728					0.04750903520562133
AELKDSSALA	10	Unmodified	_AELKDSSALA_					0	0	0		ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	MSMS	HCT116MG_D190212_S3	3	502.7660217285156	2	502.766571	1003.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.44	1	35.141	34.641	35.641	-0.29922								0	0	0	0.78084	1	13080	13080		31.268	2.1868	1				1728	5405	835	844	1729	1729					0.016971424810890312
AELKIKKVK	9	Unmodified	_AELKIKKVK_					0	0	0			REV__DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	REV__DACH1|p.R518Gfs*25|1|0.29|ENSG00000276644|chr13:71557042-71557042|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	352.90948486328125	3	352.909498	1055.70667	-0.14465	-5.1048E-05	0.14309	5.0496E-05	-0.0015638	-5.5188E-07	352.90958927735426	17.728	0.20877	17.372	17.232	17.441	-0.35647					6	3	2	0	0	0	0.76185	1	6077	6077		0.96228	0.33545	1	4117700	+		1729	10326	836	845	1730	1730					0.1810404519619624
AELKLQEQ	8	Unmodified	_AELKLQEQ_					0	0	0			REV__ENST00000449849.2_1_2:203789500-203789902:+|nuORF	REV__ENST00000449849.2_1_2:203789500-203789902:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	479.7638854980469	2	479.763832	957.513111	0.2375	0.00011394	0.037563	1.8022E-05	0.27506	0.00013197	479.7638553105809	27.064	0.20848	26.895	26.807	27.016	-0.16933					5	3	2	0	0	0	0.10825	1	9759	9759		93.166	6.834	1	3359000	+		1730	15701	837	846	1731	1731					0.03265463689297121
AELKLQEQ	8	Unmodified	_AELKLQEQ_					0	0	0			REV__ENST00000449849.2_1_2:203789500-203789902:+|nuORF	REV__ENST00000449849.2_1_2:203789500-203789902:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	479.22967529296875	2	479.763832	957.513111	0.2375	0.00011394	0.037563	1.8022E-05	0.27506	0.00013197	479.7638553105809	27.064	0.20848	26.895	26.807	27.016	-0.16933					5	3	2	0	0	0	0.15876	1	9747	9747		75.761	13.188	1	3359000	+		1731	15701	837	846	1732	1732					0.03265463689297121
AELKMQLAK	9	Unmodified	_AELKMQLAK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	MSMS	HCT116MG_D190212_S3	3	516.250244140625	2	516.299527	1030.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.336	1	32.058	31.558	32.558	-0.27841								0	0	0	0.76603	1	11848	11848		14.838	4.0143	1				1732	1691;18247	838	847	1733	1733					0.07043260122304673
AELKQVQT	8	Unmodified	_AELKQVQT_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;MACF1|p.N4824Kfs*19|1|0.33|ENSG00000127603|chr1:39387292-39387293|-/A|frameshift_variant;MACF1|p.T4896Lfs*29|1|0.27|ENSG00000127603|chr1:39387507-39387507|A/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3-3|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-MSMS	HCT116MG_D190212_S2	2	458.75823974609375	2	458.758549	915.502546	0.083628	3.8365E-05	-0.050859	-2.3332E-05	0.032768	1.5033E-05	458.7584757342063	16.243	0.20915	15.908	15.794	16.003	-0.33451					5	3	2	0	0	0	0.4699	1	5470	5470		43.772	0	1	4650300			1733	2973	839	848	1734	1734					0.04141481034866956
AELLHRMM	8	Unmodified	_AELLHRMM_					0	0	0			REV__nc|ENSG00000228696|Q8IVW1-4|ARL17A	REV__nc|ENSG00000228696|Q8IVW1-4|ARL17A	MULTI-MSMS	HCT116MG_D190212_S4	4	500.7567138671875	2	500.756972	999.499392	-0.25318	-0.00012678	-0.021618	-1.0825E-05	-0.2748	-0.00013761	500.7568780191238	16.364	0.23573	16.2	16.07	16.306	-0.16364					7	4	2	0	0	0	0.74206	1	5359	5359		18.135	18.135	1	1159900	+		1734	17298	840	849	1735	1735					-0.0003780861516133882
AELLQRAP	8	Unmodified	_AELLQRAP_					0	0	0		ENST00000471864.1_1_9:38621862-38622117:+|nuORF;nc|ENSG00000204860|Q5SY85|FAM201A	ENST00000471864.1_1_9:38621862-38622117:+|nuORF	ENST00000471864.1_1_9:38621862-38622117:+|nuORF	MSMS	HCT116MG_D190212_S1	1	449.2608947753906	2	449.261259	896.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.965	1	33.965	33.465	34.465	0								0	0	0	0.65638	1	12587	12587		34.102	2.065	1				1735	8165	841	850	1736	1736					0.055572046173210765
AELMQMFLP	9	Unmodified	_AELMQMFLP_					0	0	0		nc|ENSG00000101489|Q9BZC1-3|CELF4;nc|ENSG00000101489|Q9BZC1-2|CELF4;nc|ENSG00000101489|Q9BZC1-4|CELF4;ENSG00000101489|ENST00000420428|CELF4	nc|ENSG00000101489|Q9BZC1-3|CELF4	nc|ENSG00000101489|Q9BZC1-3|CELF4	MULTI-MSMS	HCT116MG_D190212_S3	3	540.3006591796875	2	540.266838	1078.51912	0.62998	0.00034036	-1.54	-0.00083199	-0.90998	-0.00049163	540.2659766310147	44.964	0.20077	44.654	44.532	44.732	-0.30927					5	3	2	0	0	0	0.65706	1	16802	16802		7.9102	0.62092	1	3419800			1736	1796	842	851	1737	1737					-0.01699477395050053
AELNSTKDSF	10	Unmodified	_AELNSTKDSF_					0	0	0			REV__ENSG00000146090|ENST00000361132|RASGEF1C	REV__ENSG00000146090|ENST00000361132|RASGEF1C	MULTI-MSMS	HCT116MG_D190212_S3	3	556.2673950195312	2	556.266936	1110.51932	0.58845	0.00032734	0.67152	0.00037355	1.26	0.00070088	556.2672803016353	57.202	0.26112	56.923	56.833	57.094	-0.27913					5	4	2	0	0	0	0.7974	1	21764	21764		12.241	1.4411	1	664030	+		1737	12473	843	852	1738	1738					-0.03152062869844485
AELPQSFTW	9	Unmodified	_AELPQSFTW_					0	0	0			REV__PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	REV__PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	539.7633056640625	2	539.763832	1077.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.621	1	27.432	26.932	27.932	-0.18847								0	0	0	0.69648	1	9962	9962		19.257	7.7623	1		+		1738	12250	844	853	1739	1739					-0.022545363107155936
AELQEGAR	8	Unmodified	_AELQEGAR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S1	1	437.2248229980469	2	437.224874	872.435195	0.11258	4.9224E-05	0.17932	7.8401E-05	0.2919	0.00012763	437.2249111688418	18.063	0.20847	18.063	17.933	18.141	0					6	3	2	0	0	0	0.057078	1	6195	6195		115.69	22.87	1	8351300			1739	2597	845	854	1740	1740					-0.006125491760940349
AELQEGAR	8	Unmodified	_AELQEGAR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	437.2248840332031	2	437.224874	872.435195	-0.12548	-5.4865E-05	0.047862	2.0927E-05	-0.077621	-3.3938E-05	437.2247546781578	17.634	0.15614	17.716	17.638	17.794	0.081358					4	2	2	0	0	0	0.20876	1	5960	5960		71.922	10.565	1	3353200			1740	2597	845	854	1741	1741					-0.006125491760940349
AELQENTP	8	Unmodified	_AELQENTP_					0	0	0		ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MSMS	HCT116MG_D190212_S4	4	451.2190246582031	2	451.216714	900.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.04	1	30.676	30.176	31.176	-0.36416								0	0	0	0.8837	1	11249	11249		14.582	2.0501	1				1741	4977	846	855	1742	1742					-0.03531675132842338
AELQGLFGAK	10	Unmodified	_AELQGLFGAK_					0	0	0			REV__ENST00000478998.5_1_3:108124174-108178278:-|nuORF	REV__ENST00000478998.5_1_3:108124174-108178278:-|nuORF	MSMS	HCT116MG_D190212_S1	1	517.28564453125	2	517.287474	1032.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.932	1	37.932	37.432	38.432	0								0	0	0	0.94746	1	14187	14187		5.2969	0.066215	1		+		1742	12433	847	856	1743	1743					0.04541742960304873
AELQKVRKA	9	Unmodified	_AELQKVRKA_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	HCT116MG_D190212_S2	2	521.8218994140625	2	521.822015	1041.62948	0.31516	0.00016446	-0.13987	-7.2986E-05	0.17529	9.1472E-05	521.8219158052581	16.52	0.20811	16.178	16.048	16.256	-0.34183					8	3	3	0	0	0	0.037825	1	5567	5567		80.676	36.904	1	41610000			1743	2119	848	857	1744	1744					0.11032826979840138
AELQKVRKA	9	Unmodified	_AELQKVRKA_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	521.822015	1041.62948	0.379	0.00019777	-0.13074	-6.8223E-05	0.24826	0.00012955	521.8219103008237	15.978	0.15627	15.978	15.9	16.056	0	-0.09996	4.8725E-06	NaN	80.676	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3321900			1744	2119	848	857							0.11032826979840138
AELQQHDVA	9	Unmodified	_AELQQHDVA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7501525878906	2	505.748713	1009.48287	0.30783	0.00015568	0.75249	0.00038057	1.0603	0.00053625	505.74924148172755	21.859	0.26057	21.86	21.729	21.99	0.00074577					9	4	3	0	0	0	0.040027	2	7639	7633;7639		79.596	10.491	1	12744000			1745	5087	849	858	1745;1746	1746					-0.02148894975903204
AELQQHDVA	9	Unmodified	_AELQQHDVA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S4	4	506.2408752441406	2	505.748713	1009.48287	0.23808	0.00012041	0.39218	0.00019835	0.63026	0.00031876	505.74893028802006	22.137	0.25965	21.91	21.78	22.039	-0.22777					6	4	2	0	0	0	0.05892	2	7677	7677;7709		70.332	10.258	1	6465700			1746	5087	849	858	1747;1748	1747					-0.02148894975903204
AELQRLVAA	9	Unmodified	_AELQRLVAA_					0	0	0		ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	MULTI-MSMS	HCT116MG_D190212_S1	1	485.7877502441406	2	485.787641	969.56073	0.67923	0.00032996	-0.66496	-0.00032303	0.014279	6.9366E-06	485.78731490568873	37.473	0.24973	37.473	37.301	37.55	0					7	4	2	0	0	0	0.082877	1	14004	14004		61.602	10.187	1	23525000			1747	4093	850	859	1749	1749					0.07473162680139467
AELQRLVAA	9	Unmodified	_AELQRLVAA_					0	0	0		ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	MSMS	HCT116MG_D190212_S2	2	485.7877502441406	2	485.787641	969.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.523	1	37.419	36.919	37.919	-0.10318								0	0	0	0.014652	1	14067	14067		99.755	22.93	1				1748	4093	850	859	1750	1750					0.07473162680139467
AELQSRLAA	9	Unmodified	_AELQSRLAA_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	HCT116MG_D190212_S3	3	479.76983642578125	2	479.769448	957.524344	0.3688	0.00017694	-0.11465	-5.5008E-05	0.25415	0.00012193	479.76952926854096	29.711	0.26331	29.474	29.292	29.555	-0.23655					7	4	2	0	0	0	0.032914	2	10809	10753;10809		83.429	16.972	1	8135800			1749	5619	851	860	1751;1752	1752					0.04388285783431911
AELQSRLAA	9	Unmodified	_AELQSRLAA_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	HCT116MG_D190212_S4	4	479.76959228515625	2	479.769448	957.524344	0.30951	0.00014849	0.083892	4.0249E-05	0.3934	0.00018874	479.7696458831388	29.862	0.2079	29.507	29.391	29.599	-0.35501					5	3	2	0	0	0	0.17423	1	10821	10821		43.982	3.7426	1	2823800			1750	5619	851	860	1753	1753					0.04388285783431911
AELQSRLAA	9	Unmodified	_AELQSRLAA_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	479.769448	957.524344	0.48477	0.00023258	-1.4122	-0.00067753	-0.92743	-0.00044495	479.76935967321765	29.667	0.20654	29.366	29.237	29.444	-0.30095	-0.083014	-0.0012033	NaN	83.429	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23018000			1751	5619	851	860							0.04388285783431911
AELQTRMEA	9	Unmodified	_AELQTRMEA_					0	0	0		ENST00000374723.5_1_9:108007154-108061535:+|nuORF	ENST00000374723.5_1_9:108007154-108061535:+|nuORF	ENST00000374723.5_1_9:108007154-108061535:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7584838867188	2	524.758223	1047.50189	0.60248	0.00031616	-0.51409	-0.00026978	0.088388	4.6382E-05	524.7579630396995	28.669	0.2602	28.463	28.333	28.593	-0.20593					7	4	2	0	0	0	0.043159	1	10397	10397		78.06	2.2997	1	12564000			1752	7501	852	861	1754	1754					-0.019956816764988616
AELQTRMEA	9	Unmodified	_AELQTRMEA_					0	0	0		ENST00000374723.5_1_9:108007154-108061535:+|nuORF	ENST00000374723.5_1_9:108007154-108061535:+|nuORF	ENST00000374723.5_1_9:108007154-108061535:+|nuORF	MSMS	HCT116MG_D190212_S4	4	524.7576293945312	2	524.758223	1047.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.91	1	28.57	28.07	29.07	-0.34059								0	0	0	0.074874	1	10417	10417		63.227	3.1536	1				1753	7501	852	861	1755	1755					-0.019956816764988616
AELRAGHQ	8	Unmodified	_AELRAGHQ_					0	0	0			REV__ENSG00000140795|ENST00000394809|MYLK3	REV__ENSG00000140795|ENST00000394809|MYLK3	MSMS	HCT116MG_D190212_S2	2	441.2335510253906	2	441.233033	880.451513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.192	1	16.843	16.343	17.343	-0.34933								0	0	0	0.85589	1	5836	5836		18.135	0	1		+		1754	12310	853	862	1756	1756					0.006505767806629592
AELRALEQSN	10	Unmodified	_AELRALEQSN_					0	0	0			REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	MULTI-MSMS	HCT116MG_D190212_S2	2	377.8661193847656	3	377.531527	1129.57275	-0.30974	-0.00011694	0.019731	7.4492E-06	-0.29001	-0.00010949	377.53135918273466	12.159	0.16271	11.869	11.751	11.914	-0.28953					7	4	2	0	0	0	0.88303	1	3970	3970		2.8433	0.10809	1	404260	+		1755	12950	854	863	1757	1757					0.013147346326604747
AELSELHSA	9	Unmodified	_AELSELHSA_					0	0	0		nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MSMS	HCT116MG_D190212_S2	2	478.7378234863281	2	478.737814	955.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.957	1	29.666	29.166	30.166	-0.29111								0	0	0	0.05792	1	10994	10994		68.081	19.735	1				1756	9546	855	864	1758	1758					-0.018436997244634767
AELSELHSA	9	Unmodified	_AELSELHSA_					0	0	0		nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	HCT116MG_D190212_S3	3	478.7379150390625	2	478.737814	955.461075	0.38561	0.00018461	-0.21918	-0.00010493	0.16644	7.968E-05	478.7376510115803	29.938	0.26649	29.702	29.555	29.822	-0.23655					7	4	2	0	0	0	0.031089	1	10914	10914		85.272	30.498	1	11690000			1757	9546	855	864	1759	1759					-0.018436997244634767
AELSELHSA	9	Unmodified	_AELSELHSA_					0	0	0		nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	HCT116MG_D190212_S4	4	478.7376708984375	2	478.737814	955.461075	0.36204	0.00017332	-0.34951	-0.00016732	0.012536	6.0017E-06	478.73752844519817	30.103	0.26012	29.746	29.597	29.857	-0.3571					6	4	2	0	0	0	0.049545	1	10916	10916		74.929	26.583	1	4944800			1758	9546	855	864	1760	1760					-0.018436997244634767
AELSLRQLV	9	Unmodified	_AELSLRQLV_					0	0	0		CON__A2VCT4	CON__A2VCT4	CON__A2VCT4	MULTI-MSMS	HCT116MG_D190212_S2	2	514.80908203125	2	514.808574	1027.60259	0.34473	0.00017747	-0.023229	-1.1959E-05	0.3215	0.00016551	514.8086778729877	40.324	0.20766	40.251	40.154	40.361	-0.072842					6	3	2	0	0	0	0.069315	1	15231	15231		65.235	2.6623	1	10145000		+	1759	536	856	865	1761	1761					0.08989718368638933
AELSQPLTA	9	Unmodified	_AELSQPLTA_					0	0	0		RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant;ENSG00000117222|ENST00000264515|RBBP5	RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant	RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	929.4944458007812	1	929.493838	928.486562	0.88403	0.0008217	0.21833	0.00020294	1.1024	0.0010246	929.4938012823281	36.784	0.31183	36.483	36.301	36.613	-0.30113					8	5	2	0	0	0	0.0035381	1	13617	13617		171.09	48.907	1	7263400			1760	2565	857	866	1762	1762					0.019457747979458873
AELSQPLTA	9	Unmodified	_AELSQPLTA_					0	0	0		RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant;ENSG00000117222|ENST00000264515|RBBP5	RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant	RBBP5|p.V520L|1|0.13|ENSG00000117222|chr1:205094903-205094903|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	929.49560546875	1	929.493838	928.486562	0.73059	0.00067908	-0.40761	-0.00037888	0.32298	0.0003002	929.4935757427044	36.864	0.25941	36.479	36.331	36.591	-0.38486					6	4	2	0	0	0	0.0058997	1	13528	13528		129.77	51.623	1	2707700			1761	2565	857	866	1763	1763					0.019457747979458873
AELTFRQH	8	Unmodified	_AELTFRQH_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MSMS	HCT116MG_D190212_S4	4	501.26104736328125	2	501.261791	1000.50903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.431	1	37.047	36.547	37.547	-0.3839								0	0	0	0.8396	1	13736	13736		19.439	3.5918	1				1762	851	858	867	1764	1764					0.008794189862328494
AELTPEAVTA	10	Unmodified	_AELTPEAVTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	1001.5159301757812	1	1001.51497	1000.50769	0.43479	0.00043545	0.69763	0.00069868	1.1324	0.0011341	1001.5156115252087	37.172	0.30902	37.069	36.871	37.18	-0.10318					9	5	2	0	0	0	0.015316	1	13928	13928		131.27	75.091	1	26260000			1763	3119	859	868	1765	1765					0.00745740106822268
AELTPEAVTA	10	Unmodified	_AELTPEAVTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	1001.51611328125	1	1001.51497	1000.50769	0.63422	0.00063518	-0.17488	-0.00017514	0.45934	0.00046004	1001.5147842564812	37.357	0.36411	37.055	36.821	37.185	-0.30137					17	6	3	0	0	0	0.015316	1	13820	13820		131.27	75.091	1	18656000			1764	3119	859	868	1766	1766					0.00745740106822268
AELTPEAVTA	10	Unmodified	_AELTPEAVTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	501.2611389160156	2	501.261122	1000.50769	0.51275	0.00025702	-3.4942	-0.0017515	-2.9815	-0.0014945	501.25917903043927	37.399	0.4159	37.098	36.821	37.237	-0.30137					16	7	3	0	0	0	0.060393	1	13825	13825		81.89	31.957	1	14918000			1765	3119	859	868	1767	1767					0.00745740106822268
AELTPEAVTA	10	Unmodified	_AELTPEAVTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	1001.5164184570312	1	1001.51497	1000.50769	0.49506	0.00049581	0.18628	0.00018656	0.68134	0.00068237	1001.5149685490351	37.437	0.2569	37.054	36.874	37.131	-0.3839					8	4	2	0	0	0	0.02502	1	13731	13731		111.29	52.608	1	5851000			1766	3119	859	868	1768	1768					0.00745740106822268
AELVKEAR	8	Unmodified	_AELVKEAR_					0	0	0			REV__nc|ENSG00000176974|P34896-4|SHMT1	REV__nc|ENSG00000176974|P34896-4|SHMT1	MSMS	HCT116MG_D190212_S2	2	458.266845703125	2	458.266542	914.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.56	1	21.175	20.675	21.675	-0.38503								0	0	0	0.45437	1	7594	7594		45.7	1.8413	1		+		1767	13558	860	869	1769	1769					0.05785187271760606
AELVKEAR	8	Unmodified	_AELVKEAR_					0	0	0			REV__nc|ENSG00000176974|P34896-4|SHMT1	REV__nc|ENSG00000176974|P34896-4|SHMT1	MSMS	HCT116MG_D190212_S3	3	458.2667236328125	2	458.266542	914.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.671	1	20.705	20.205	21.205	0.034473								0	0	0	0.84187	1	7162	7162		19.257	1.1106	1		+		1768	13558	860	869	1770	1770					0.05785187271760606
AELWENSF	8	Unmodified	_AELWENSF_					0	0	0		ENST00000575955.1_1_17:4120189-4167236:-|nuORF	ENST00000575955.1_1_17:4120189-4167236:-|nuORF	ENST00000575955.1_1_17:4120189-4167236:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2271728515625	2	498.227082	994.439611	0.16099	8.0209E-05	-0.51142	-0.00025481	-0.35044	-0.0001746	498.226734809989	34.711	0.25984	34.414	34.284	34.544	-0.29707					7	4	2	0	0	0	0.66231	1	12804	12804		26.884	3.7352	1	4679100			1769	8923	861	870	1771	1771					-0.05783084753181811
AELWKNPTA	9	Unmodified	_AELWKNPTA_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C;nc|ENSG00000175063|O00762-4|UBE2C;chr20:45814470-45815390|467|14.73|0.65|4.5|+|ENST00000335046|UBE2C,UBE2C	nc|ENSG00000175063|O00762-2|UBE2C;chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2714233398438	2	515.271824	1028.5291	0.2198	0.00011326	-0.25049	-0.00012907	-0.030695	-1.5816E-05	515.2715578737179	37.078	0.26027	36.776	36.613	36.873	-0.30128					6	4	2	0	0	0	0.15281	1	13720	13720		47.732	20.103	1	5633200			1770	5360;454	862	871	1772	1772					0.01597169926208153
AELWKNPTA	9	Unmodified	_AELWKNPTA_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C;nc|ENSG00000175063|O00762-4|UBE2C;chr20:45814470-45815390|467|14.73|0.65|4.5|+|ENST00000335046|UBE2C,UBE2C	nc|ENSG00000175063|O00762-2|UBE2C;chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MATCH	HCT116MG_D190212_S2	2		2	515.271824	1028.5291	0.22376	0.0001153	0.74969	0.00038629	0.97346	0.00050159	515.2721932728155	36.846	0.30973	36.731	36.602	36.912	-0.11478	-0.022556	0.00081712	NaN	47.732	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8794800			1771	5360;454	862	871							0.01597169926208153
AELYFHDSA	9	Unmodified	_AELYFHDSA_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7380981445312	2	526.737814	1051.46108	0.42899	0.00022597	-0.17732	-9.3403E-05	0.25167	0.00013256	526.7377705667099	37.148	0.31232	36.847	36.717	37.029	-0.30137					9	5	3	0	0	0	0.19461	1	13781	13781		41.84	11.203	1	6977500			1772	948	863	872	1773	1773					-0.06259699724478196
AELYFHDSA	9	Unmodified	_AELYFHDSA_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	HCT116MG_D190212_S4	4	526.7377319335938	2	526.737814	1051.46108	0.32917	0.00017339	-0.14556	-7.6673E-05	0.18361	9.6713E-05	526.7378226928323	37.232	0.2061	36.849	36.771	36.977	-0.3839					5	3	2	0	0	0	0.097615	1	13681	13681		58.679	29.597	1	4853900			1773	948	863	872	1774	1774					-0.06259699724478196
AELYQYCSS	9	Unmodified	_AELYQYCSS_					0	0	0			REV__ENST00000418115.5_1_3:49397482-49397617:-|nuORF	REV__ENST00000418115.5_1_3:49397482-49397617:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	532.2232055664062	2	532.223682	1062.43281	0.27429	0.00014598	-0.26684	-0.00014202	0.0074441	3.9619E-06	532.2235028582784	43.186	0.26123	43.186	43.003	43.264	0					7	4	2	0	0	0	0.30117	1	16318	16318		30.637	2.1497	1	12967000	+		1774	15495	864	873	1775	1775					-0.09590765696066228
AELYQYCSS	9	Unmodified	_AELYQYCSS_					0	0	0			REV__ENST00000418115.5_1_3:49397482-49397617:-|nuORF	REV__ENST00000418115.5_1_3:49397482-49397617:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	532.7723999023438	2	532.223682	1062.43281	0.27429	0.00014598	-0.26684	-0.00014202	0.0074441	3.9619E-06	532.2235028582784	43.186	0.26123	43.186	43.003	43.264	0					7	4	2	0	0	0	0.20889	1	16295	16295		24.021	24.021	1	12967000	+		1775	15495	864	873	1776	1776					-0.09590765696066228
AEMAPYMKR	9	Unmodified	_AEMAPYMKR_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MSMS	HCT116MG_D190212_S3	3	366.18072509765625	3	366.180783	1095.52052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.201	1	26.06	25.56	26.56	-0.1407								0	0	0	0.7663	1	9389	9389		9.544	0.79857	1				1776	4728	865	874	1777	1777					-0.023418433063170596
AEMDGAAAA	9	Unmodified	_AEMDGAAAA_					0	0	0		nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	MULTI-MSMS	HCT116MG_D190212_S3	3	806.3353881835938	1	806.334895	805.327618	0.85818	0.00069198	-0.14081	-0.00011354	0.71737	0.00057844	806.3345654844451	22.053	0.36447	22.054	21.834	22.198	0.00074577					8	6	2	0	0	0	0.031005	1	7729	7729		85.357	24.967	1	2768400			1777	3432	866	875	1778	1778					-0.08283262101849687
AEMEHGLHEA	10	Unmodified	_AEMEHGLHEA_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	HCT116MG_D190212_S2	2	562.2455444335938	2	562.24548	1122.47641	0.32414	0.00018225	0.0047341	2.6617E-06	0.32888	0.00018491	562.2453725830347	21.582	0.20761	21.197	21.115	21.323	-0.38503					7	3	3	0	0	0	0.11897	1	7629	7629		70.332	44.064	1	16331000			1778	4843	867	876	1779	1779					-0.07993156198926954
AEMEHGLHEA	10	Unmodified	_AEMEHGLHEA_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	HCT116MG_D190212_S3	3	562.246337890625	2	562.24548	1122.47641	0.24786	0.00013936	-0.57184	-0.00032151	-0.32398	-0.00018215	562.2455259909739	20.81	0.46837	20.845	20.662	21.131	0.034473					14	8	3	0	0	0	0.072018	1	7231	7231		79.596	45.195	1	10916000			1779	4843	867	876	1780	1780					-0.07993156198926954
AEMEHGLHEA	10	Unmodified	_AEMEHGLHEA_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	HCT116MG_D190212_S3	3	375.1659851074219	3	375.166079	1122.47641	-0.22344	-8.3826E-05	0.18557	6.962E-05	-0.037865	-1.4206E-05	375.1660685094044	20.81	0.20819	20.845	20.766	20.975	0.034473					5	3	2	0	0	0	0.53455	1	7244	7244		22.775	13.799	1	5203200			1780	4843	867	876	1781	1781					-0.07993156198926954
AEMEHGLHEA	10	Unmodified	_AEMEHGLHEA_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	HCT116MG_D190212_S4	4	562.7471313476562	2	562.24548	1122.47641	0.25757	0.00014482	0.034908	1.9627E-05	0.29247	0.00016444	562.2458053523638	21.203	0.31145	20.993	20.76	21.071	-0.20959					7	5	2	0	0	0	0.17574	2	7318	7279;7318		61.602	37.581	1	4688500			1781	4843	867	876	1782;1783	1783					-0.07993156198926954
AEMEKQKVA	9	Unmodified	_AEMEKQKVA_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	517.271240234375	2	517.270967	1032.52738	0.34791	0.00017997	0.065801	3.4037E-05	0.41371	0.000214	517.2709383947914	16.436	0.3643	16.436	16.161	16.525	0					14	6	3	0	0	0	0.0096585	1	5540	5540		114.19	62.557	1	14191000			1782	1331	868	877	1784	1784					0.012417928459399263
AEMEKQKVA	9	Unmodified	_AEMEKQKVA_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1033.5355224609375	1	1033.53466	1032.52738	0.5154	0.00053269	0.12401	0.00012817	0.63942	0.00066086	1033.5348999902349	16.884	0.26004	16.543	16.412	16.672	-0.34183					6	4	2	0	0	0	0.0096585	1	5738	5738		114.19	56.464	1	6750700			1783	1331	868	877	1785	1785					0.012417928459399263
AEMEKQKVA	9	Unmodified	_AEMEKQKVA_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	517.2709350585938	2	517.270967	1032.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.896	1	16.554	16.054	17.054	-0.34183								0	0	0	0.0060055	1	5716	5716		114.19	58.009	1				1784	1331	868	877	1786	1786					0.012417928459399263
AEMEKQKVA	9	Unmodified	_AEMEKQKVA_					0	0	0		PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant;ENSG00000076201|ENST00000265562|PTPN23	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	PTPN23|p.L1513Wfs*71|1|0.44|ENSG00000076201|chr3:47412805-47412805|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	517.27099609375	2	517.270967	1032.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.62	1	15.705	15.205	16.205	0.085423								0	0	0	0.17014	1	5124	5124		49.527	18.891	1				1785	1331	868	877	1787	1787					0.012417928459399263
AEMELQAKLTA	11	Unmodified	_AEMELQAKLTA_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-MSMS	HCT116MG_D190212_S2	2	602.8157958984375	2	602.815738	1203.61692	0.78801	0.00047502	0.082435	4.9693E-05	0.87044	0.00052472	602.815751445631	40.27	0.31172	40.197	40.05	40.361	-0.072838					8	5	2	0	0	0	0.25786	1	15212	15212		88.576	42.836	1	9000400			1786	5456	869	878	1788	1788					0.023260027346395873
AEMEMKNRQV	10	Unmodified	_AEMEMKNRQV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S1	1	618.2968139648438	2	618.29719	1234.57983	0.55799	0.000345	-0.50552	-0.00031256	0.052469	3.2442E-05	618.2968439637239	22.402	0.20882	22.402	22.272	22.481	0					8	3	3	0	0	0	0.0081677	1	7936	7936		159.1	109.57	1	12679000			1787	1778	870	879	1789	1789					-0.02807992082784949
AEMEMKNRQV	10	Unmodified	_AEMEMKNRQV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S1	1	412.53363037109375	3	412.533885	1234.57983	-0.034366	-1.4177E-05	0.12927	5.3329E-05	0.094906	3.9152E-05	412.8683394648741	22.402	0.20882	22.402	22.272	22.481	0					7	3	3	0	0	0	0.12519	1	7944	7944		51.488	32.767	1	5640400			1788	1778	870	879	1790	1790					-0.02807992082784949
AEMEMKNRQV	10	Unmodified	_AEMEMKNRQV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S2	2	618.2975463867188	2	618.29719	1234.57983	0.37937	0.00023456	-0.53571	-0.00033123	-0.15635	-9.6669E-05	618.2972323735926	22.945	0.36406	22.56	22.414	22.778	-0.3852					20	6	5	0	0	0	0.00070447	1	8169	8169		181.69	132.14	1	103040000			1789	1778	870	879	1791	1791					-0.02807992082784949
AEMEMKNRQV	10	Unmodified	_AEMEMKNRQV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S2	2	412.53399658203125	3	412.533885	1234.57983	-0.14811	-6.1101E-05	-0.44711	-0.00018445	-0.59522	-0.00024555	412.53391463000537	22.97	0.31198	22.585	22.414	22.726	-0.3852					13	5	4	0	0	0	0.047039	1	8174	8174		68.76	36.143	1	40334000			1790	1778	870	879	1792	1792					-0.02807992082784949
AEMEMKNRQV	10	Unmodified	_AEMEMKNRQV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S3	3	412.53387451171875	3	412.533885	1234.57983	0.021512	8.8746E-06	-0.62712	-0.00025871	-0.6056	-0.00024983	412.53382285426795	22.328	0.36497	22.328	22.146	22.511	0.00074577					19	6	5	0	0	0	0.047039	1	7829	7829		68.76	46.651	1	54523000			1791	1778	870	879	1793	1793					-0.02807992082784949
AEMEMKNRQV	10	Unmodified	_AEMEMKNRQV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S3	3	618.2973022460938	2	618.29719	1234.57983	0.37265	0.00023041	-0.44958	-0.00027798	-0.076934	-4.7568E-05	618.2972116011082	22.328	0.46901	22.328	22.146	22.615	0.00074577					24	8	5	0	0	0	0.040924	1	7870	7870		93.938	61.152	1	86708000			1792	1778	870	879	1794	1794					-0.02807992082784949
AEMEMKNRQV	10	Unmodified	_AEMEMKNRQV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S4	4	618.2975463867188	2	618.29719	1234.57983	0.43053	0.0002662	-0.73088	-0.0004519	-0.30035	-0.00018571	618.2972275816182	22.657	0.4163	22.419	22.133	22.55	-0.23758					17	7	4	0	0	0	0.0034649	1	7894	7894		171.46	113.74	1	39447000			1793	1778	870	879	1795	1795					-0.02807992082784949
AEMEMKNRQV	10	Unmodified	_AEMEMKNRQV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S4	4	412.5337829589844	3	412.533885	1234.57983	0.049963	2.0611E-05	-0.058966	-2.4326E-05	-0.0090031	-3.7141E-06	412.53384570385543	22.657	0.31352	22.419	22.289	22.603	-0.23758					9	5	2	0	0	0	0.042655	1	7895	7895		70.929	40.225	1	20544000			1794	1778	870	879	1796	1796					-0.02807992082784949
AEMEMKNRQV	10	Oxidation (M)	_AEMEM(Oxidation (M))KNRQV_		AEMEM(1)KNRQV		AEM(-54)EM(54)KNRQV	0	0	1		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S2	2	626.2948608398438	2	626.294647	1250.57474	0.51652	0.0003235	0.066419	4.1598E-05	0.58294	0.00036509	626.2948250357848	17.579	0.26093	17.227	17.132	17.393	-0.35161					9	4	3	0	0	0	0.019498	1	6008	6008		121.35	81.396	2	9145300			1795	1778	870	880	1797	1797		35;36			-0.040522959454165175
AEMEMKNRQV	10	Oxidation (M)	_AEM(Oxidation (M))EMKNRQV_		AEM(1)EMKNRQV		AEM(34)EM(-34)KNRQV	0	0	1		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S4	4	626.294677734375	2	626.294647	1250.57474	-0.064781	-4.0572E-05	0.071362	4.4694E-05	0.0065815	4.122E-06	626.2948038661946	17.198	0.41323	17.027	16.812	17.225	-0.17047					10	7	3	0	0	0	0.14637	1	5699	5699		64.927	38.659	2	2920500			1796	1778	870	880	1798	1798		35;36			-0.040522959454165175
AEMENIKAI	9	Unmodified	_AEMENIKAI_					0	0	0		ENSG00000029725|ENST00000537505|RABEP1;ENST00000575475.2_1_17:5185712-5281605:+|nuORF;nc|ENSG00000029725|Q15276-2|RABEP1	ENSG00000029725|ENST00000537505|RABEP1	ENSG00000029725|ENST00000537505|RABEP1	MULTI-MSMS	HCT116MG_D190212_S3	3	509.7655944824219	2	509.765517	1017.51648	0.19177	9.7756E-05	0.095327	4.8594E-05	0.28709	0.00014635	509.7655515324234	37.079	0.31228	36.777	36.613	36.925	-0.30129					11	5	3	0	0	0	0.0064416	1	13732	13732		125.04	71.205	1	9648400			1797	964	871	881	1799	1799					0.008423904716437391
AEMENIKAI	9	Unmodified	_AEMENIKAI_					0	0	0		ENSG00000029725|ENST00000537505|RABEP1;ENST00000575475.2_1_17:5185712-5281605:+|nuORF;nc|ENSG00000029725|Q15276-2|RABEP1	ENSG00000029725|ENST00000537505|RABEP1	ENSG00000029725|ENST00000537505|RABEP1	MULTI-MSMS	HCT116MG_D190212_S4	4	509.7654113769531	2	509.765517	1017.51648	0.11659	5.9435E-05	0.078043	3.9783E-05	0.19464	9.9219E-05	509.7654756645764	37.232	0.33678	36.849	36.64	36.977	-0.3839					8	6	2	0	0	0	0.053544	1	13667	13667		72.968	36.841	1	4097200			1798	964	871	881	1800	1800					0.008423904716437391
AEMESSHQQV	10	Unmodified	_AEMESSHQQV_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S3	3	573.2482299804688	2	573.24822	1144.48189	0.4394	0.00025188	-0.27078	-0.00015523	0.16861	9.6657E-05	573.2478948444867	19.768	0.31252	19.828	19.698	20.011	0.05983					9	5	3	0	0	0	0.71349	1	6817	6817		19.257	4.8516	1	6559800			1799	1666	872	882	1801	1801					-0.08457477407137048
AEMESSHQQV	10	Unmodified	_AEMESSHQQV_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MSMS	HCT116MG_D190212_S4	4	573.2484130859375	2	573.24822	1144.48189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.126	1	19.931	19.431	20.431	-0.19583								0	0	0	0.3563	1	6870	6870		55.503	17.529	1				1800	1666	872	882	1802	1802					-0.08457477407137048
AEMESSHQQV	10	Unmodified	_AEMESSHQQV_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MATCH	HCT116MG_D190212_S2	2		2	573.24822	1144.48189	0.34055	0.00019522	0.50627	0.00029022	0.84682	0.00048544	573.2483164051189	20.536	0.16058	20.157	20.023	20.183	-0.37949	0.16419	0.00059465	NaN	19.257	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4489800			1801	1666	872	882							-0.08457477407137048
AEMGPPHHHP	10	Unmodified	_AEMGPPHHHP_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	555.2503051757812	2	555.2509	1108.48725	0.35042	0.00019457	-0.19966	-0.00011086	0.15076	8.3709E-05	555.2508833011212	17.131	0.67705	16.781	16.301	16.978	-0.34933					25	12	3	0	0	0	0.032631	1	5766	5766		133.7	87.681	1	12038000			1802	434	873	883	1803	1803					-0.0626570903400534
AEMGPPHHHP	10	Unmodified	_AEMGPPHHHP_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	370.5027160644531	3	370.503025	1108.48725	-0.19106	-7.0788E-05	-0.34766	-0.00012881	-0.53872	-0.0001996	370.50288398816997	17.04	0.41628	16.691	16.509	16.925	-0.34933					12	7	2	0	0	0	0.64492	1	5812	5812		24.991	0	1	4397900			1803	434	873	883	1804	1804					-0.0626570903400534
AEMGPPHHHP	10	Unmodified	_AEMGPPHHHP_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	555.250732421875	2	555.2509	1108.48725	0.38248	0.00021237	-0.0012025	-6.6769E-07	0.38128	0.00021171	555.2508352570151	15.66	0.57295	15.746	15.352	15.925	0.085423					23	10	3	0	0	0	0.20072	1	5111	5111		81.613	51.388	1	2354200			1804	434	873	883	1805	1805					-0.0626570903400534
AEMGPPHHHP	10	Unmodified	_AEMGPPHHHP_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	370.50311279296875	3	370.503025	1108.48725	-0.10198	-3.7784E-05	0.19639	7.2763E-05	0.094411	3.498E-05	370.50302432404885	15.708	0.62494	15.793	15.352	15.977	0.085423					16	11	2	0	0	0	0.71224	1	5114	5114		19.362	8.5624	1	1257400			1805	434	873	883	1806	1806					-0.0626570903400534
AEMGTHTV	8	Unmodified	_AEMGTHTV_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.V2203A|1|0.08|ENSG00000196924|chrX:154352342-154352342|A/G|missense_variant;ENST00000474358.5_1_X:153580213-153581146:-|nuORF;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	423.1949768066406	2	423.194728	844.374903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.75	1	22.365	21.865	22.865	-0.3852								0	0	0	0.70483	1	8075	8075		30.225	3.8835	1				1806	6105	874	884	1807	1807					-0.053509828308278884
AEMGTRTFSA	10	Unmodified	_AEMGTRTFSA_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2;UGGT2|p.F198S|1|0.43|ENSG00000102595|chr13:96013374-96013374|A/G|missense_variant;ENST00000467305.1_1_13:96637506-96665674:-|nuORF;nc|ENSG00000102595|Q9NYU1-2|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	535.7508544921875	2	535.750398	1069.48624	0.36933	0.00019787	-0.028644	-1.5346E-05	0.34069	0.00018252	535.7503058374704	31.011	0.26098	30.75	30.656	30.917	-0.26071					6	4	2	0	0	0	0.72406	1	11343	11343		18.373	0.22675	1	2093000			1807	18679	875	885	1808	1808					-0.04571968193545217
AEMIPSTAWIP	11	Unmodified	_AEMIPSTAWIP_					0	0	0		ENST00000396595.7_1_4:41615083-41615657:+|nuORF	ENST00000396595.7_1_4:41615083-41615657:+|nuORF	ENST00000396595.7_1_4:41615083-41615657:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	608.3079223632812	2	608.307549	1214.60055	0.6803	0.00041383	-0.28697	-0.00017457	0.39333	0.00023926	608.3072771553472	17.646	0.15629	17.646	17.568	17.724	0					4	2	2	0	0	0	0.73111	1	6048	6048		13.042	0	1	5400600			1808	7654	876	886	1809	1809					0.0018292156853476627
AEMKEKYEA	9	Unmodified	_AEMKEKYEA_					0	0	0		ENST00000465771.3_1_1:39330344-39338266:-|nuORF;ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000465771.3_1_1:39330344-39338266:-|nuORF	ENST00000465771.3_1_1:39330344-39338266:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	550.2623901367188	2	549.760432	1097.50631	0.35614	0.00019579	0.10821	5.9492E-05	0.46435	0.00025528	549.7604955493873	19.936	0.25849	19.561	19.455	19.713	-0.37503					7	4	2	0	0	0	0.049866	1	6952	6952		74.772	47.143	1	11633000			1809	6431	877	887	1810	1810					-0.03854217253592651
AEMKEKYEA	9	Unmodified	_AEMKEKYEA_					0	0	0		ENST00000465771.3_1_1:39330344-39338266:-|nuORF;ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000465771.3_1_1:39330344-39338266:-|nuORF	ENST00000465771.3_1_1:39330344-39338266:-|nuORF	MSMS	HCT116MG_D190212_S3	3	549.7604370117188	2	549.760432	1097.50631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.007	1	19.076	18.576	19.576	0.069159								0	0	0	0.11783	1	6491	6491		53.317	16.811	1				1810	6431	877	887	1811	1811					-0.03854217253592651
AEMKEKYEA	9	Unmodified	_AEMKEKYEA_					0	0	0		ENST00000465771.3_1_1:39330344-39338266:-|nuORF;ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000465771.3_1_1:39330344-39338266:-|nuORF	ENST00000465771.3_1_1:39330344-39338266:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	549.7445068359375	2	549.760432	1097.50631	0.5472	0.00030083	0.43501	0.00023915	0.98221	0.00053998	550.2624205115933	19.394	0.25998	19.207	19.077	19.337	-0.18674					7	4	2	0	0	0	0.49039	1	6545	6545		17.443	0.32975	1	2220500			1811	6431	877	887	1812	1812					-0.03854217253592651
AEMLDQRQA	9	Unmodified	_AEMLDQRQA_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	HCT116MG_D190212_S3	3	531.2557373046875	2	531.255848	1060.49714	0.56356	0.00029939	0.14424	7.663E-05	0.7078	0.00037602	531.2560785205593	25.008	0.31271	24.902	24.735	25.048	-0.10618					7	5	2	0	0	0	0.43775	1	8913	8913		20.454	2.3073	1	4070800			1812	4264	878	888	1813	1813					-0.030685658192624032
AEMLSGHFRE	10	Unmodified	_AEMLSGHFRE_					0	0	0		MEI1|p.L226Sfs*22|2|0.33|ENSG00000167077|chr22:41718209-41718209|T/-|frameshift_variant;nc|ENSG00000167077|Q5TIA1-6|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1;MEI1|p.K750Rfs*6|1|0.45|ENSG00000167077|chr22:41763301-41763302|AA/-|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1	MEI1|p.L226Sfs*22|2|0.33|ENSG00000167077|chr22:41718209-41718209|T/-|frameshift_variant	MEI1|p.L226Sfs*22|2|0.33|ENSG00000167077|chr22:41718209-41718209|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	588.7747802734375	2	588.776948	1175.53934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.69	1	14.37	13.87	14.87	-0.31952								0	0	0	0.94339	1	4828	4828		6.2058	0.9089	1				1813	4901	879	889	1814	1814					-0.041405904109069525
AEMLYGLIHA	10	Unmodified	_AEMLYGLIHA_					0	0	0		ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENSG00000204435|ENST00000375882|CSNK2B	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	559.2896118164062	2	559.289159	1116.56377	0.52364	0.00029287	-0.0080437	-4.4987E-06	0.5156	0.00028837	559.2889582955397	54.44	0.15207	54.44	54.333	54.485	0					6	2	3	0	0	0	0.29592	1	20888	20888		50.855	31.598	1	80642000			1814	6334	880	890	1815	1815					0.010146697426534956
AEMLYGLIHA	10	Unmodified	_AEMLYGLIHA_					0	0	0		ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENSG00000204435|ENST00000375882|CSNK2B	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	559.2891845703125	2	559.289159	1116.56377	0.38859	0.00021734	-0.014696	-8.2193E-06	0.3739	0.00020912	559.2890678495748	54.619	0.20457	54.43	54.354	54.559	-0.1894					9	3	4	0	0	0	0.098238	1	21055	21055		74.423	43.154	1	197900000			1815	6334	880	890	1816	1816					0.010146697426534956
AEMLYGLIHA	10	Unmodified	_AEMLYGLIHA_					0	0	0		ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENSG00000204435|ENST00000375882|CSNK2B	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	559.2893676757812	2	559.289159	1116.56377	0.37153	0.00020779	0.027048	1.5127E-05	0.39858	0.00022292	559.2891514742364	54.769	0.20908	54.473	54.347	54.556	-0.29587					10	3	4	0	0	0	0.1893	1	20763	20763		60.39	41.133	1	21189000			1816	6334	880	890	1817	1817					0.010146697426534956
AEMLYGLIHA	10	Unmodified	_AEMLYGLIHA_					0	0	0		ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENSG00000204435|ENST00000375882|CSNK2B	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MSMS	HCT116MG_D190212_S4	4	559.2892456054688	2	559.289159	1116.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.85	1	54.532	54.032	55.032	-0.31823								0	0	0	0.90023	1	20521	20521		15.847	6.4997	1				1817	6334	880	890	1818	1818					0.010146697426534956
AEMLYGLIHA	10	Oxidation (M)	_AEM(Oxidation (M))LYGLIHA_		AEM(1)LYGLIHA		AEM(60)LYGLIHA	0	0	1		ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENSG00000204435|ENST00000375882|CSNK2B	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	567.7881469726562	2	567.286617	1132.55868	0.28653	0.00016255	0.054034	3.0653E-05	0.34057	0.0001932	567.2865932593512	47.987	0.41692	47.671	47.462	47.879	-0.31596					12	7	2	0	0	0	0.1893	1	18038	18038		60.39	41.133	1	4747700			1818	6334	880	891	1819	1819		135			-0.0022963411995533534
AEMLYGLIHA	10	Oxidation (M)	_AEM(Oxidation (M))LYGLIHA_		AEM(1)LYGLIHA		AEM(60)LYGLIHA	0	0	1		ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENSG00000204435|ENST00000375882|CSNK2B	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.2872924804688	2	567.286617	1132.55868	0.46368	0.00026304	0.091625	5.1978E-05	0.5553	0.00031502	567.286782585532	47.953	0.36031	47.584	47.418	47.778	-0.36907					11	6	2	0	0	0	0.1893	1	17745	17745		60.39	47.858	1	3519100			1819	6334	880	891	1820	1820		135			-0.0022963411995533534
AEMLYGLIHA	10	Oxidation (M)	_AEM(Oxidation (M))LYGLIHA_					0	0	1		ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF;ENSG00000204435|ENST00000375882|CSNK2B	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	567.286617	1132.55868	0.74454	0.00042236	0.95844	0.00054371	1.703	0.00096608	567.2869779020783	47.899	0.5144	47.767	47.428	47.943	-0.13281	0.092551	0.00097942	NaN	60.39	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24199000			1820	6334	880	891				135			-0.0022963411995533534
AEMMNMSHL	9	Unmodified	_AEMMNMSHL_					0	0	0			REV__BMPR2|p.I540Lfs*24|2|0.36|ENSG00000204217|chr2:202555279-202555279|A/-|frameshift_variant	REV__BMPR2|p.I540Lfs*24|2|0.36|ENSG00000204217|chr2:202555279-202555279|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	532.2228393554688	2	532.222105	1062.42966	0.11997	6.385E-05	1.6946	0.00090192	1.8146	0.00096577	532.2228969060446	43.13	0.61786	43.056	42.84	43.458	-0.073372					17	11	2	0	0	0	0.30117	1	16349	16349		30.637	3.0077	1	13831000	+		1821	10046	881	892	1821	1821					-0.09906055346073117
AEMNGKLIA	9	Unmodified	_AEMNGKLIA_					0	0	0		ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	473.7550354003906	2	473.754953	945.495352	0.42751	0.00020253	0.98019	0.00046437	1.4077	0.0006669	473.7557432435732	32.819	0.52057	32.534	32.144	32.664	-0.28511					13	9	2	0	0	0	0.041798	1	12046	12046		78.728	17.371	1	11771000			1822	2526	882	893	1822	1822					0.02042425162778727
AEMNGKLIA	9	Unmodified	_AEMNGKLIA_					0	0	0		ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	473.75506591796875	2	473.754953	945.495352	0.46911	0.00022224	-0.25481	-0.00012072	0.2143	0.00010153	473.754747993092	32.942	0.2015	32.559	32.413	32.615	-0.38223					6	3	2	0	0	0	0.11023	1	12036	12036		56.177	12.319	1	6063500			1823	2526	882	893	1823	1823					0.02042425162778727
AEMNGKLIA	9	Unmodified	_AEMNGKLIA_					0	0	0		ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	473.754953	945.495352	0.33413	0.00015829	-0.5422	-0.00025687	-0.20808	-9.8577E-05	473.7546410543139	32.761	0.25868	32.55	32.43	32.688	-0.21135	0.0018668	-0.00020285	NaN	78.728	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10950000			1824	2526	882	893							0.02042425162778727
AEMNGKLIAA	10	Unmodified	_AEMNGKLIAA_					0	0	0		ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.2641906738281	2	509.273509	1016.53247	0.53286	0.00027137	-0.7648	-0.00038949	-0.23194	-0.00011812	509.27294784234044	33.259	0.15482	33.259	33.141	33.296	0					4	2	2	0	0	0	0.25492	1	12304	12304		34.932	4.2955	1	7500800			1825	2526	883	894	1824	1824					0.024860967085373886
AEMNGKLIAA	10	Unmodified	_AEMNGKLIAA_					0	0	0		ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2737121582031	2	509.273509	1016.53247	0.68493	0.00034882	0.061396	3.1267E-05	0.74633	0.00038008	509.273412936641	33.494	0.25631	33.301	33.174	33.43	-0.19297					8	4	2	0	0	0	0.035798	1	12453	12453		97.741	28.636	1	59475000			1826	2526	883	894	1825	1825					0.024860967085373886
AEMNGKLIAA	10	Unmodified	_AEMNGKLIAA_					0	0	0		ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	509.27386474609375	2	509.273509	1016.53247	0.21019	0.00010705	0.29067	0.00014803	0.50086	0.00025508	509.27352408673084	33.62	0.41477	33.33	33.148	33.563	-0.29013					17	7	4	0	0	0	0.027082	1	12349	12349		107.56	38.458	1	35308000			1827	2526	883	894	1826	1826					0.024860967085373886
AEMNGKLIAA	10	Unmodified	_AEMNGKLIAA_					0	0	0		ENST00000491112.1_1_1:185269520-185270317:-|nuORF;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;IVNS1ABP|p.L465Yfs*9|1|0.03|ENSG00000116679|chr1:185300106-185300107|-/GTAT|frameshift_variant;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	ENST00000491112.1_1_1:185269520-185270317:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	509.2737121582031	2	509.273509	1016.53247	0.38315	0.00019513	-0.13324	-6.7857E-05	0.24991	0.00012727	509.27344824516666	33.771	0.30215	33.387	33.215	33.517	-0.38426					10	5	3	0	0	0	0.041964	1	12309	12309		93.166	24.061	1	13361000			1828	2526	883	894	1827	1827					0.024860967085373886
AEMPAVSTPP	10	Unmodified	_AEMPAVSTPP_					0	0	0			REV__ENST00000527895.1_1_19:42636742-42637128:+|nuORF	REV__ENST00000527895.1_1_19:42636742-42637128:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	500.24462890625	2	500.244418	998.474282	0.45624	0.00022823	0.25969	0.00012991	0.71592	0.00035814	500.24449233160703	27.547	0.25484	27.226	27.096	27.351	-0.32157					7	4	2	0	0	0	0.48679	1	9890	9890		36.127	7.6325	1	2898300	+		1829	16292	884	895	1828	1828					-0.025015849367491683
AEMPDSAAA	9	Unmodified	_AEMPDSAAA_					0	0	0		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	MULTI-MSMS	HCT116MG_D190212_S2	2	862.3621215820312	1	862.361109	861.353833	0.70635	0.00060913	-0.044854	-3.868E-05	0.66149	0.00057045	862.3610662818265	25.498	0.2614	25.129	24.978	25.239	-0.36914					6	4	2	0	0	0	0.11731	1	9201	9201		54.774	7.8527	1	10730000			1830	2045	885	896	1829	1829					-0.08238992930364475
AEMPDSAAA	9	Unmodified	_AEMPDSAAA_					0	0	0		nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME	nc|ENSG00000105928|O60443-3|GSDME	nc|ENSG00000105928|O60443-3|GSDME	MULTI-MSMS	HCT116MG_D190212_S3	3	862.3612060546875	1	862.361109	861.353833	0.85371	0.00073621	-0.10379	-8.9507E-05	0.74992	0.0006467	862.3608181957844	25.388	0.52043	25.282	24.995	25.516	-0.10618					11	9	2	0	0	0	0.050578	1	9067	9067		74.423	23.568	1	9843400			1831	2045	885	896	1830	1830					-0.08238992930364475
AEMPQHLP	8	Unmodified	_AEMPQHLP_					0	0	0			REV__ENST00000598038.5_1_19:17447996-17448320:+|nuORF	REV__ENST00000598038.5_1_19:17447996-17448320:+|nuORF	MSMS	HCT116MG_D190212_S3	3	461.72442626953125	2	461.726195	921.437837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.144	1	37.843	37.343	38.343	-0.30137								0	0	0	0.8217	1	14120	14120		20.871	1.4322	1		+		1832	16732	886	897	1831	1831					-0.02602417042783145
AEMPQNYRP	9	Oxidation (M)	_AEM(Oxidation (M))PQNYRP_		AEM(1)PQNYRP		AEM(75)PQNYRP	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	561.25634765625	2	561.255848	1120.49714	0.39483	0.0002216	-0.07159	-4.018E-05	0.32324	0.00018142	561.2557548702487	23.706	0.99335	23.706	23.314	24.307	0					42	18	3	0	0	0	0.049545	2	8379	8379;8607		74.929	33.089	1	9720800			1833	2724	887	898	1832;1833	1832		55			-0.05828565819297182
AEMPQNYRP	9	Oxidation (M)	_AEM(Oxidation (M))PQNYRP_		AEM(1)PQNYRP		AEM(85)PQNYRP	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	561.2561645507812	2	561.255848	1120.49714	0.58677	0.00032933	-0.15602	-8.7569E-05	0.43074	0.00024176	561.255743349158	24.148	1.0932	23.768	23.198	24.292	-0.38003					65	20	4	0	0	0	0.031089	2	8718	8493;8718		85.272	41.414	1	60101000			1834	2724	887	898	1834;1835	1835		55			-0.05828565819297182
AEMPQNYRP	9	Oxidation (M)	_AEM(Oxidation (M))PQNYRP_		AEM(1)PQNYRP		AEM(79)PQNYRP	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	561.2560424804688	2	561.255848	1120.49714	0.31606	0.00017739	0.051482	2.8895E-05	0.36754	0.00020629	561.2558606806864	23.824	1.3542	23.763	23.061	24.415	-0.061449					75	25	4	0	0	0	0.041798	2	8474	8238;8474		78.728	30.979	1	50139000			1835	2724	887	898	1836;1837	1837		55			-0.05828565819297182
AEMPQNYRP	9	Oxidation (M)	_AEM(Oxidation (M))PQNYRP_		AEM(1)PQNYRP		AEM(75)PQNYRP	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	561.2561645507812	2	561.255848	1120.49714	0.30868	0.00017325	0.10934	6.1369E-05	0.41802	0.00023462	561.2558686382092	24.067	1.2983	23.809	23.209	24.507	-0.25816					74	24	4	0	0	0	0.049545	2	8523	8302;8523		74.929	35.007	1	38470000			1836	2724	887	898	1838;1839	1839		55			-0.05828565819297182
AEMPQNYRP	9	Unmodified	_AEMPQNYRP_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	553.258544921875	2	553.258391	1104.50223	0.76252	0.00042187	-0.29536	-0.00016341	0.46716	0.00025846	553.2582850284975	28.668	0.73856	28.668	28.164	28.903	0					44	13	4	0	0	0	0.069315	1	10315	10315		65.235	41.214	1	95954000			1837	2724	887	899	1840	1840					-0.04584261956665614
AEMPQNYRP	9	Unmodified	_AEMPQNYRP_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2587280273438	2	553.258391	1104.50223	0.30376	0.00016806	0.25864	0.00014309	0.5624	0.00031115	553.2585425889537	28.947	1.0759	28.631	27.939	29.015	-0.31613					59	20	4	0	0	0	0.045679	3	10409	10409;10564;10646		76.825	32.966	1	892700000			1838	2724	887	899	1841;1842;1843	1841					-0.04584261956665614
AEMPQNYRP	9	Unmodified	_AEMPQNYRP_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1105.5096435546875	1	1105.5095	1104.50223	0.58528	0.00064703	-0.25239	-0.00027902	0.33289	0.00036801	1105.5094593205229	28.929	0.56248	28.613	28.249	28.812	-0.31613					18	10	3	0	0	0	0.0034469	1	10572	10572		179.17	107.25	1	52835000			1839	2724	887	899	1844	1844					-0.04584261956665614
AEMPQNYRP	9	Unmodified	_AEMPQNYRP_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2587280273438	2	553.258391	1104.50223	0.54282	0.00030032	-0.19778	-0.00010942	0.34505	0.0001909	553.258406885699	29.034	1.3022	28.812	28.004	29.306	-0.22195					85	24	5	0	0	0	0.016701	3	10511	10290;10467;10511		99.799	47.531	1	527960000			1840	2724	887	899	1845;1846;1847	1847					-0.04584261956665614
AEMPQNYRP	9	Unmodified	_AEMPQNYRP_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1105.5111083984375	1	1105.5095	1104.50223	0.51943	0.00057423	-0.020085	-2.2204E-05	0.49934	0.00055203	1105.5092508708092	29.051	0.78077	28.829	28.317	29.098	-0.22195					21	14	2	0	0	0	0.0034865	1	10484	10484		165.72	93.798	1	11546000			1841	2724	887	899	1848	1848					-0.04584261956665614
AEMPQNYRP	9	Unmodified	_AEMPQNYRP_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MSMS	HCT116MG_D190212_S3	3	553.26171875	2	553.258391	1104.50223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.232	1	29.982	29.482	30.482	-0.24946								0	0	0	0.53872	1	11011	11011		26.884	6.43	1				1842	2724	887	899	1849	1849					-0.04584261956665614
AEMPQNYRP	9	Unmodified	_AEMPQNYRP_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2586669921875	2	553.258391	1104.50223	0.43916	0.00024297	-0.033568	-1.8572E-05	0.40559	0.0002244	553.2584341048884	29.148	1.1946	28.808	28.055	29.249	-0.34059					69	22	5	0	0	0	0.031089	2	10556	10318;10556		85.272	47.298	1	201580000			1843	2724	887	899	1850;1851	1851					-0.04584261956665614
AEMPQNYRP	9	Unmodified	_AEMPQNYRP_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1105.5096435546875	1	1105.5095	1104.50223	0.51773	0.00057236	0.079757	8.8173E-05	0.59749	0.00066053	1105.5094675646933	29.185	0.46729	28.845	28.522	28.989	-0.34059					14	8	2	0	0	0	0.0038512	1	10495	10495		152.89	90.313	1	5236700			1844	2724	887	899	1852	1852					-0.04584261956665614
AEMPTQMSP	9	Unmodified	_AEMPTQMSP_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	HCT116MG_D190212_S3	3	496.2149963378906	2	496.214803	990.415053	0.25169	0.00012489	0.24231	0.00012024	0.494	0.00024513	496.2149019479507	34.983	0.62332	34.686	34.336	34.959	-0.29707					17	11	3	0	0	0	0.26031	1	12888	12888		34.932	2.1464	1	5129400			1845	4939	888	900	1853	1853					-0.0805380422257258
AEMPTQMSP	9	Unmodified	_AEMPTQMSP_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	HCT116MG_D190212_S3	3	991.4232788085938	1	991.422329	990.415053	0.60848	0.00060326	-0.063422	-6.2878E-05	0.54506	0.00054038	991.4223726477454	34.979	0.57127	34.682	34.388	34.959	-0.29707					17	10	2	0	0	0	0.023778	1	12896	12896		92.653	14.504	1	5531100			1846	4939	888	900	1854	1854					-0.0805380422257258
AEMQGKSAREA	11	Unmodified	_AEMQGKSAREA_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S2	2	589.2855224609375	2	589.285137	1176.55572	0.44893	0.00026455	-0.14493	-8.5403E-05	0.304	0.00017914	589.2851036404975	14.792	0.36495	14.472	14.296	14.661	-0.31952					17	6	4	0	0	0	0.031725	1	4853	4853		104.94	64.986	1	10355000			1847	1680	889	901	1855	1855					-0.02549509244795445
AEMQGKSAREA	11	Unmodified	_AEMQGKSAREA_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S2	2	393.1924743652344	3	393.192517	1176.55572	-0.05918	-2.3269E-05	-0.12797	-5.0318E-05	-0.18715	-7.3587E-05	393.1924929168635	14.799	0.26074	14.479	14.296	14.557	-0.31952					9	4	3	0	0	0	0.41751	1	4875	4875		51.264	40.949	1	1945100			1848	1680	889	901	1856	1856					-0.02549509244795445
AEMQSAMNLA	10	Unmodified	_AEMQSAMNLA_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MSMS	HCT116MG_D190212_S3	3	533.2386474609375	2	533.238809	1064.46307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.212	1	40.91	40.41	41.41	-0.30185								0	0	0	0.88085	1	15324	15324		18.373	3.5348	1				1849	2933	890	902	1857	1857					-0.06658730302524418
AEMREQYEA	9	Unmodified	_AEMREQYEA_					0	0	0		CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13	CON__P08730-1	CON__P08730-1	MULTI-MSMS	HCT116MG_D190212_S1	1	563.7455444335938	2	563.745313	1125.47607	0.33751	0.00019027	-0.78687	-0.0004436	-0.44936	-0.00025332	563.7453718736632	23.608	0.2088	23.608	23.471	23.679	0					8	3	3	0	0	0	0.10482	1	8419	8419		57.249	15.409	1	5872300		+	1850	534	891	903	1858	1858					-0.08164575918772243
AEMREQYEA	9	Unmodified	_AEMREQYEA_					0	0	0		CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13	CON__P08730-1	CON__P08730-1	MULTI-MSMS	HCT116MG_D190212_S2	2	563.7454223632812	2	563.745313	1125.47607	0.67773	0.00038207	-0.26512	-0.00014946	0.41261	0.00023261	563.7452189492127	24.072	0.36317	23.688	23.508	23.871	-0.38324					20	6	4	0	0	0	0.011034	1	8610	8610		110.79	60.86	1	72998000		+	1851	534	891	903	1859	1859					-0.08164575918772243
AEMREQYEA	9	Unmodified	_AEMREQYEA_					0	0	0		CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13	CON__P08730-1	CON__P08730-1	MULTI-MSMS	HCT116MG_D190212_S3	3	563.2622680664062	2	563.745313	1125.47607	0.39327	0.00022171	-0.052776	-2.9752E-05	0.3405	0.00019195	563.745252151042	23.669	0.57323	23.629	23.448	24.021	-0.03968					21	10	4	0	0	0	0.0039465	4	8343	8343;8352;8364;8465		151.48	82.375	1	64120000		+	1852	534	891	903	1860;1861;1862;1863	1860					-0.08164575918772243
AEMREQYEA	9	Unmodified	_AEMREQYEA_					0	0	0		CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13	CON__P08730-1	CON__P08730-1	MULTI-MSMS	HCT116MG_D190212_S4	4	563.7455444335938	2	563.745313	1125.47607	0.35585	0.00020061	0.18017	0.00010157	0.53602	0.00030218	563.7453368632915	23.943	0.41584	23.685	23.521	23.937	-0.25816					13	7	2	0	0	0	0.011034	1	8398	8398		110.79	54.616	1	24603000		+	1853	534	891	903	1864	1864					-0.08164575918772243
AEMREQYEA	9	Oxidation (M)	_AEM(Oxidation (M))REQYEA_		AEM(1)REQYEA		AEM(51)REQYEA	0	0	1		CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13	CON__P08730-1	CON__P08730-1	MSMS	HCT116MG_D190212_S4	4	571.7432861328125	2	571.74277	1141.47099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.465	1	19.278	18.778	19.778	-0.18674								0	0	0	0.14408	1	6603	6603		51.415	26.016	1			+	1854	534	891	904	1865	1865		9			-0.09408879781403812
AEMSTDPFAA	10	Unmodified	_AEMSTDPFAA_					0	0	0			REV__ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	REV__ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	520.2235717773438	2	520.223682	1038.43281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.316	1	35.93	35.43	36.43	-0.38558								0	0	0	0.92607	1	13285	13285		10.074	2.1638	1		+		1855	9971	892	905	1866	1866					-0.08486765696079601
AEMTNTTEP	9	Unmodified	_AEMTNTTEP_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	HCT116MG_D190212_S3	3	497.2133483886719	2	497.213314	992.412076	0.28919	0.00014379	0.13515	6.7196E-05	0.42433	0.00021098	497.21339863375056	23.755	0.57328	23.694	23.53	24.103	-0.061447					16	10	2	0	0	0	0.15273	1	8413	8413		47.749	15.443	1	4876700			1856	5361	893	906	1867	1867					-0.08443356075747488
AEMTNTTEP	9	Unmodified	_AEMTNTTEP_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	HCT116MG_D190212_S4	4	497.2139587402344	2	497.213314	992.412076	0.52627	0.00026167	-0.37491	-0.00018641	0.15136	7.5258E-05	497.21322252659877	23.928	0.46774	23.67	23.521	23.989	-0.25816					10	8	2	0	0	0	0.53593	1	8414	8414		14.838	2.3067	1	2336400			1857	5361	893	906	1868	1868					-0.08443356075747488
AEMTTRMVA	9	Unmodified	_AEMTTRMVA_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	HCT116MG_D190212_S3	3	505.2431335449219	2	505.243895	1008.47324	0.28067	0.0001418	-0.058143	-2.9376E-05	0.22252	0.00011243	505.2438275020557	30.431	0.25652	30.182	30.017	30.274	-0.24946					21	15	2	0	0	0	0.051033	1	11072	11072		74.2	43.563	1	23589000			1858	6372	894	907	1869	1869					-0.03066122577297392
AEMTTRMVA	9	Unmodified	_AEMTTRMVA_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	HCT116MG_D190212_S4	4	505.2430419921875	2	505.243895	1008.47324	0.19656	9.9312E-05	-0.5074	-0.00025636	-0.31084	-0.00015705	505.2438111486788	30.602	0.20625	30.238	30.165	30.371	-0.36416					20	12	2	0	0	0	0.10482	2	11067	11057;11067		57.249	26.613	1	18428000			1859	6372	894	907	1870;1871	1871					-0.03066122577297392
AEMTTRMVA	9	Oxidation (M)	_AEM(Oxidation (M))TTRMVA_		AEM(0.998)TTRM(0.002)VA		AEM(27)TTRM(-27)VA	0	0	1		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	HCT116MG_D190212_S4	4	513.2413940429688	2	513.241352	1024.46815	0.17594	9.0297E-05	0.36212	0.00018586	0.53806	0.00027615	513.24132861018	23.649	0.26007	23.402	23.22	23.48	-0.24775					7	4	2	0	0	0	0.20983	1	8311	8311		40.239	13.356	2	2611900			1860	6372	894	908	1872	1872		136			-0.04310426439906223
AEMVKPSTP	9	Unmodified	_AEMVKPSTP_					0	0	0		ENSG00000105771|ENST00000270066|SMG9;nc|ENSG00000105771|Q9H0W8-2|SMG9;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant	ENSG00000105771|ENST00000270066|SMG9	ENSG00000105771|ENST00000270066|SMG9	MSMS	HCT116MG_D190212_S2	2	480.2470703125	2	480.24696	958.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.561	1	25.192	24.692	25.692	-0.36914								0	0	0	0.080552	1	9210	9210		61.602	23.451	1				1861	2034	895	909	1873	1873					-0.0015328107413097314
AEMVKPSTP	9	Unmodified	_AEMVKPSTP_					0	0	0		ENSG00000105771|ENST00000270066|SMG9;nc|ENSG00000105771|Q9H0W8-2|SMG9;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant	ENSG00000105771|ENST00000270066|SMG9	ENSG00000105771|ENST00000270066|SMG9	MULTI-MSMS	HCT116MG_D190212_S3	3	480.24700927734375	2	480.24696	958.479368	0.31372	0.00015067	-0.17026	-8.1766E-05	0.14347	6.8899E-05	480.2468402951434	25.22	0.46903	25.114	24.839	25.308	-0.10618					15	8	2	0	0	0	0.019537	1	8994	8994		96.936	48.59	1	6359800			1862	2034	895	909	1874	1874					-0.0015328107413097314
AEMVKPSTP	9	Unmodified	_AEMVKPSTP_					0	0	0		ENSG00000105771|ENST00000270066|SMG9;nc|ENSG00000105771|Q9H0W8-2|SMG9;SMG9|p.H366Tfs*2|1|0.22|ENSG00000105771|chr19:43734395-43734395|G/-|frameshift_variant	ENSG00000105771|ENST00000270066|SMG9	ENSG00000105771|ENST00000270066|SMG9	MULTI-MSMS	HCT116MG_D190212_S4	4	480.2466735839844	2	480.24696	958.479368	0.45443	0.00021824	-0.63124	-0.00030315	-0.17681	-8.4913E-05	480.2465115058259	25.451	0.41608	25.171	24.902	25.318	-0.27958					9	7	2	0	0	0	0.32162	1	8981	8981		28.487	8.0332	1	1781000			1863	2034	895	909	1875	1875					-0.0015328107413097314
AEMYTKTGV	9	Unmodified	_AEMYTKTGV_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MSMS	HCT116MG_D190212_S3	3	500.7472839355469	2	500.244418	998.474282	0.53621	0.00026824	0.3074	0.00015378	0.84362	0.00042201	500.24440505599824	27.367	0.31224	27.198	27.016	27.328	-0.16933					8	5	2	0	0	0	0.026272	1	9865	9865		90.135	46.277	1	10791000			1864	2855	896	910	1876	1876					-0.02501584936726431
AEMYTKTGV	9	Unmodified	_AEMYTKTGV_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	500.244418	998.474282	0.63481	0.00031756	0.43594	0.00021808	1.0708	0.00053564	500.24471585374783	27.507	0.20629	27.165	27.037	27.243	-0.34201	-0.031563	0.00011929	NaN	90.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7814900			1865	2855	896	910							-0.02501584936726431
AEMYTKTGV	9	Unmodified	_AEMYTKTGV_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	500.244418	998.474282	0.45624	0.00022823	0.25969	0.00012991	0.71592	0.00035814	500.24449233160703	27.547	0.25484	27.226	27.096	27.351	-0.32157	0.029745	-5.7046E-05	NaN	90.135	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2898300			1866	2855	896	910							-0.02501584936726431
AENAGLSSTA	10	Unmodified	_AENAGLSSTA_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	HCT116MG_D190212_S2	2	920.4322509765625	1	920.431966	919.42469	0.73345	0.00067509	-0.024881	-2.2901E-05	0.70857	0.00065219	920.4319654027348	23.345	0.31092	22.96	22.83	23.141	-0.3852					8	5	2	0	0	0	0.099369	1	8326	8326		74.2	15.521	1	24010000			1867	5182	897	911	1877	1877					-0.03824576621184406
AENAGLSSTA	10	Unmodified	_AENAGLSSTA_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	HCT116MG_D190212_S3	3	920.4321899414062	1	920.431966	919.42469	0.74045	0.00068153	-0.12895	-0.00011869	0.6115	0.00056284	920.4316692993204	23.11	0.3123	23.07	22.875	23.187	-0.03968					10	5	3	0	0	0	0.032631	1	8144	8144		100.09	37.518	1	8016500			1868	5182	897	911	1878	1878					-0.03824576621184406
AENAGLSSTA	10	Unmodified	_AENAGLSSTA_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MSMS	HCT116MG_D190212_S3	3	460.719482421875	2	460.719621	919.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.137	1	23.097	22.597	23.597	-0.03968								0	0	0	0.80235	1	8154	8154		28.495	4.4739	1				1869	5182	897	911	1879	1879					-0.03824576621184406
AENAGLSSTA	10	Unmodified	_AENAGLSSTA_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	HCT116MG_D190212_S4	4	920.431640625	1	920.431966	919.42469	0.55794	0.00051354	-1.2682	-0.0011673	-0.71023	-0.00065372	920.4303571779759	23.244	0.21024	22.996	22.905	23.116	-0.24775					5	3	2	0	0	0	0.24395	1	8154	8154		55.503	24.866	1	1920900			1870	5182	897	911	1880	1880					-0.03824576621184406
AENALHLHLLK	11	Unmodified	_AENALHLHLLK_					0	0	0			REV__ENST00000296754.7_2_5:96098754-96098832:-|nuORF	REV__ENST00000296754.7_2_5:96098754-96098832:-|nuORF	MSMS	HCT116MG_D190212_S2	2	629.8659057617188	2	629.866954	1257.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.103	1	30.836	30.336	31.336	-0.26704								0	0	0	0.91257	1	11461	11461		18.373	6.1324	1		+		1871	14763	898	912	1881	1881					0.10080456588434572
AENAVECFQT	10	Unmodified	_AENAVECFQT_					0	0	0		AFP|p.N348Kfs*10|1|0.39|ENSG00000081051|chr4:73447654-73447655|-/A|frameshift_variant;AFP|p.N348Ifs*22|1|0.38|ENSG00000081051|chr4:73447655-73447655|A/-|frameshift_variant;AFP|p.E594Mfs*10|1|0.05|ENSG00000081051|chr4:73453890-73453891|-/AATGCTATTTT|frameshift_variant;ENSG00000081051|ENST00000395792|AFP	AFP|p.N348Kfs*10|1|0.39|ENSG00000081051|chr4:73447654-73447655|-/A|frameshift_variant	AFP|p.N348Kfs*10|1|0.39|ENSG00000081051|chr4:73447654-73447655|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	556.2415771484375	2	556.239864	1110.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.35	1	23.31	22.81	23.81	-0.03968								0	0	0	0.88261	1	8240	8240		18.146	2.2992	1				1872	73	899	913	1882	1882					-0.0856397829306843
AENAYHIHQA	10	Unmodified	_AENAYHIHQA_					0	0	0		INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant;INO80|p.R1318Gfs*6|1|0.16|ENSG00000128908|chr15:40984322-40984322|T/-|frameshift_variant;ENSG00000128908|ENST00000648947|INO80	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	577.2731323242188	2	577.272887	1152.53122	0.58918	0.00034012	-0.14782	-8.5332E-05	0.44136	0.00025479	577.2728051930048	20.826	0.31594	20.826	20.696	21.012	0					8	5	3	0	0	0	0.019431	1	7322	7322		121.5	90.235	1	12162000			1873	3017	900	914	1883	1883					-0.0389440133599237
AENAYHIHQA	10	Unmodified	_AENAYHIHQA_					0	0	0		INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant;INO80|p.R1318Gfs*6|1|0.16|ENSG00000128908|chr15:40984322-40984322|T/-|frameshift_variant;ENSG00000128908|ENST00000648947|INO80	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	385.1841125488281	3	385.18435	1152.53122	0.011932	4.5959E-06	-0.21549	-8.3004E-05	-0.20356	-7.8408E-05	385.18439091629824	20.826	0.31249	20.826	20.592	20.904	0					6	5	2	0	0	0	0.73913	1	7328	7328		14.957	12.326	1	4135500			1874	3017	900	914	1884	1884					-0.0389440133599237
AENAYHIHQA	10	Unmodified	_AENAYHIHQA_					0	0	0		INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant;INO80|p.R1318Gfs*6|1|0.16|ENSG00000128908|chr15:40984322-40984322|T/-|frameshift_variant;ENSG00000128908|ENST00000648947|INO80	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	385.6913757324219	3	385.18435	1152.53122	-0.11458	-4.4133E-05	-0.02801	-1.0789E-05	-0.14259	-5.4922E-05	385.1843294843254	21.422	0.20725	21.039	20.91	21.117	-0.38288					6	3	2	0	0	0	0.13861	2	7536	7536;7569		49.742	23.721	1	13057000			1875	3017	900	914	1885;1886	1885					-0.0389440133599237
AENAYHIHQA	10	Unmodified	_AENAYHIHQA_					0	0	0		INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant;INO80|p.R1318Gfs*6|1|0.16|ENSG00000128908|chr15:40984322-40984322|T/-|frameshift_variant;ENSG00000128908|ENST00000648947|INO80	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	577.27294921875	2	577.272887	1152.53122	0.32368	0.00018685	0.31713	0.00018307	0.64081	0.00036992	577.272932329337	21.422	0.25928	21.039	20.91	21.169	-0.38288					9	4	3	0	0	0	0.01344	1	7547	7547		135.72	97.104	1	44652000			1876	3017	900	914	1887	1887					-0.0389440133599237
AENDFSVSQA	10	Unmodified	_AENDFSVSQA_					0	0	0		ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	534.7373657226562	2	534.235635	1066.45672	0.52275	0.00027927	-0.11304	-6.0388E-05	0.40972	0.00021888	534.2354375051277	33.247	0.20652	33.247	33.141	33.348	0					6	3	2	0	0	0	0.42802	1	12322	12322		40.239	19.786	1	5366000			1877	13	901	915	1888	1888					-0.07385208938035248
AENDFSVSQA	10	Unmodified	_AENDFSVSQA_					0	0	0		ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1067.459228515625	1	1067.46399	1066.45672	0.86596	0.00092438	-2.7797	-0.0029673	-1.9138	-0.0020429	1067.4605787706932	33.443	0.25578	33.25	33.071	33.327	-0.19297					6	4	2	0	0	0	0.37453	1	12429	12429		43.982	22.445	1	16305000			1878	13	901	915	1889	1889					-0.07385208938035248
AENDFSVSQA	10	Unmodified	_AENDFSVSQA_					0	0	0		ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.7456665039062	2	534.235635	1066.45672	0.79918	0.00042695	-0.40851	-0.00021824	0.39067	0.00020871	534.2354552572125	33.392	0.25578	33.2	33.071	33.327	-0.19297					7	4	2	0	0	0	0.25942	1	12414	12414		40.239	27.999	1	27366000			1879	13	901	915	1890	1890					-0.07385208938035248
AENDFSVSQA	10	Unmodified	_AENDFSVSQA_					0	0	0		ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	534.236083984375	2	534.235635	1066.45672	0.48484	0.00025902	0.17422	9.3076E-05	0.65907	0.0003521	534.2356599026909	33.62	0.36272	33.33	33.148	33.511	-0.29013					13	6	3	0	0	0	0.28966	1	12351	12351		51.415	20.779	1	18745000			1880	13	901	915	1891	1891					-0.07385208938035248
AENDFSVSQA	10	Unmodified	_AENDFSVSQA_					0	0	0		ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1067.46533203125	1	1067.46399	1066.45672	0.56098	0.00059883	-0.25409	-0.00027123	0.30689	0.0003276	1067.4630034297343	33.62	0.20742	33.33	33.2	33.408	-0.29013					5	3	2	0	0	0	0.20072	1	12364	12364		59.368	41.222	1	4537200			1881	13	901	915	1892	1892					-0.07385208938035248
AENDFSVSQA	10	Unmodified	_AENDFSVSQA_					0	0	0		ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	534.2963256835938	2	534.235635	1066.45672	0.68246	0.0003646	0.13914	7.4331E-05	0.8216	0.00043893	534.2356516267126	33.669	0.23588	33.284	33.126	33.362	-0.38426					6	4	2	0	0	0	0.29174	1	12272	12272		23.79	13.716	1	2587700			1882	13	901	915	1893	1893					-0.07385208938035248
AENDFVHRI	9	Unmodified	_AENDFVHRI_					0	0	0		nc|ENSG00000104679|Q9Y3T6-3|R3HCC1;ENSG00000104679|ENST00000265806|R3HCC1	nc|ENSG00000104679|Q9Y3T6-3|R3HCC1	nc|ENSG00000104679|Q9Y3T6-3|R3HCC1	MULTI-MSMS	HCT116MG_D190212_S2	2	550.778076171875	2	550.777805	1099.54106	0.49954	0.00027514	-0.0065687	-3.6179E-06	0.49297	0.00027152	550.7775772140956	34.273	0.36343	34.097	33.967	34.331	-0.17512					10	6	2	0	0	0	0.18514	1	12779	12779		45.74	12.954	1	23573000			1883	1942	902	916	1894	1894					-0.004732133306106334
AENDFVHRI	9	Unmodified	_AENDFVHRI_					0	0	0		nc|ENSG00000104679|Q9Y3T6-3|R3HCC1;ENSG00000104679|ENST00000265806|R3HCC1	nc|ENSG00000104679|Q9Y3T6-3|R3HCC1	nc|ENSG00000104679|Q9Y3T6-3|R3HCC1	MSMS	HCT116MG_D190212_S2	2	367.52093505859375	3	367.520962	1099.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.367	1	34.192	33.692	34.692	-0.17512								0	0	0	0.76659	1	12784	12784		12.873	2.722	1				1884	1942	902	916	1895	1895					-0.004732133306106334
AENDKHLSV	9	Unmodified	_AENDKHLSV_					0	0	0		KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant;KIAA1522|p.H58Tfs*24|1|0.4|ENSG00000162522|chr1:32767894-32767894|C/-|frameshift_variant;nc|ENSG00000162522|Q9P206-4|NHSL3;nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522	KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant;nc|ENSG00000162522|Q9P206|NHSL3	KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	506.7564392089844	2	506.756538	1011.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.489	1	23.105	22.605	23.605	-0.38368								0	0	0	0.053528	1	8374	8374		69.338	20.992	1				1885	9259;4529	903	917	1896	1896					-0.006766084588434751
AENEGLLVA	9	Unmodified	_AENEGLLVA_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	915.4788818359375	1	915.478188	914.470912	1.0079	0.00092272	-0.5562	-0.00050919	0.4517	0.00041352	915.4774449877972	43.609	0.30831	43.536	43.407	43.715	-0.073376					8	5	2	0	0	0	0.047849	1	16569	16569		75.761	18.289	1	13620000			1886	6354	904	918	1897	1897					0.010254882809135779
AENEGLLVA	9	Unmodified	_AENEGLLVA_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S3	3	915.4799194335938	1	915.478188	914.470912	0.82499	0.00075526	-0.16252	-0.00014878	0.66247	0.00060648	915.4782827826714	43.937	0.46906	43.631	43.396	43.865	-0.30616					12	8	2	0	0	0	0.047849	1	16380	16380		75.761	3.8386	1	6887500			1887	6354	904	918	1898	1898					0.010254882809135779
AENEGLLVA	9	Unmodified	_AENEGLLVA_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH	HCT116MG_D190212_S4	4		1	915.478188	914.470912	0.71022	0.00065019	-0.47499	-0.00043485	0.23522	0.00021534	915.4778300813902	43.971	0.25923	43.597	43.468	43.727	-0.37373	0.0093894	-6.7976E-05	NaN	75.761	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5200400			1888	6354	904	918							0.010254882809135779
AENEHIAGA	9	Unmodified	_AENEHIAGA_					0	0	0		ENST00000398379.2_1_7:75104389-75113565:-|nuORF;ENST00000484974.5_1_7:102004612-102016337:+|nuORF;ENST00000396904.2_2_7:5085545-5096993:+|nuORF;ENST00000492837.1_1_7:102004828-102016337:+|nuORF	ENST00000398379.2_1_7:75104389-75113565:-|nuORF	ENST00000398379.2_1_7:75104389-75113565:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	456.2144470214844	2	456.214506	910.414459	0.099417	4.5355E-05	-0.27642	-0.00012611	-0.177	-8.0752E-05	456.21441596217744	20.483	0.2665	20.103	19.969	20.236	-0.37949					10	4	3	0	0	0	0.10244	1	7184	7184		57.722	12.022	1	29993000			1889	7659	905	919	1899	1899					-0.044331395557492215
AENEHIAGA	9	Unmodified	_AENEHIAGA_					0	0	0		ENST00000398379.2_1_7:75104389-75113565:-|nuORF;ENST00000484974.5_1_7:102004612-102016337:+|nuORF;ENST00000396904.2_2_7:5085545-5096993:+|nuORF;ENST00000492837.1_1_7:102004828-102016337:+|nuORF	ENST00000398379.2_1_7:75104389-75113565:-|nuORF	ENST00000398379.2_1_7:75104389-75113565:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	456.2145690917969	2	456.214506	910.414459	0.27545	0.00012566	-0.40079	-0.00018285	-0.12534	-5.7183E-05	456.21443476178365	19.716	0.41669	19.776	19.646	20.063	0.05983					12	7	3	0	0	0	0.0080847	1	6778	6778		118.07	46.146	1	16067000			1890	7659	905	919	1900	1900					-0.044331395557492215
AENEHIAGA	9	Unmodified	_AENEHIAGA_					0	0	0		ENST00000398379.2_1_7:75104389-75113565:-|nuORF;ENST00000484974.5_1_7:102004612-102016337:+|nuORF;ENST00000396904.2_2_7:5085545-5096993:+|nuORF;ENST00000492837.1_1_7:102004828-102016337:+|nuORF	ENST00000398379.2_1_7:75104389-75113565:-|nuORF	ENST00000398379.2_1_7:75104389-75113565:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	456.2145080566406	2	456.214506	910.414459	0.22621	0.0001032	-0.50518	-0.00023047	-0.27897	-0.00012727	456.21440002344997	20.06	0.2599	19.866	19.736	19.996	-0.19367					7	4	2	0	0	0	0.020353	1	6848	6848		96.111	38.64	1	5351100			1891	7659	905	919	1901	1901					-0.044331395557492215
AENELGVVVA	10	Unmodified	_AENELGVVVA_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MSMS	HCT116MG_D190212_S1	1	500.7691955566406	2	500.769114	999.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.188	1	44.188	43.688	44.688	0								0	0	0	0.17901	1	16713	16713		70.332	15.558	1				1892	5189	906	920	1902	1902					0.023894463437159175
AENELGVVVA	10	Unmodified	_AENELGVVVA_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7693786621094	2	500.769114	999.523675	0.23066	0.00011551	0.17452	8.7396E-05	0.40518	0.0002029	500.76897559206657	44.23	0.67867	44.152	43.967	44.646	-0.078373					16	12	3	0	0	0	0.22442	1	16795	16795		57.249	7.3161	1	113650000			1893	5189	906	920	1903	1903					0.023894463437159175
AENELGVVVA	10	Unmodified	_AENELGVVVA_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MSMS	HCT116MG_D190212_S2	2	1000.5320434570312	1	1000.53095	999.523675	0.32149	0.00032166	-0.012411	-1.2417E-05	0.30907	0.00030924	1000.5307618060878	44.225	0.26196	44.147	44.019	44.281	-0.078373					10	4	3	0	0	0	0.055088	1	16800	16800		83.429	27.252	1	98854000			1894	5189	906	920	1904	1904					0.023894463437159175
AENELGVVVA	10	Unmodified	_AENELGVVVA_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MSMS	HCT116MG_D190212_S3	3	500.7691650390625	2	500.769114	999.523675	0.69516	0.00034812	-0.28535	-0.00014289	0.40982	0.00020522	500.7688171846642	44.456	0.35985	44.149	43.967	44.327	-0.30759					13	7	2	0	0	0	0.055088	1	16623	16623		83.429	23.355	1	69904000			1895	5189	906	920	1905	1905					0.023894463437159175
AENELGVVVA	10	Unmodified	_AENELGVVVA_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MSMS	HCT116MG_D190212_S3	3	1000.5314331054688	1	1000.53095	999.523675	0.79338	0.0007938	-0.21636	-0.00021647	0.57702	0.00057733	1000.5306656910765	44.456	0.35985	44.149	43.967	44.327	-0.30759					13	7	2	0	0	0	0.055088	1	16625	16625		83.429	27.252	1	21444000			1896	5189	906	920	1906	1906					0.023894463437159175
AENELGVVVA	10	Unmodified	_AENELGVVVA_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MSMS	HCT116MG_D190212_S4	4	500.7690734863281	2	500.769114	999.523675	0.3834	0.00019199	0.10047	5.0312E-05	0.48387	0.00024231	500.7691167972653	44.52	0.30931	44.146	43.977	44.286	-0.37326					10	6	2	0	0	0	0.11897	1	16408	16408		70.332	6.3715	1	21455000			1897	5189	906	920	1907	1907					0.023894463437159175
AENELGVVVA	10	Unmodified	_AENELGVVVA_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1000.53095	999.523675	0.58781	0.00058812	0.22789	0.00022801	0.8157	0.00081613	1000.5311784582642	44.185	0.2641	44.185	43.986	44.25	0	0.020571	0.00025469	NaN	83.429	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11988000			1898	5189	906	920							0.023894463437159175
AENELGVVVA	10	Unmodified	_AENELGVVVA_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1000.53095	999.523675	0.60905	0.00060938	0.030614	3.063E-05	0.63967	0.00064001	1000.5309354334247	44.551	0.2729	44.177	43.977	44.25	-0.37326	0.012749	5.7311E-05	NaN	83.429	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7287900			1899	5189	906	920							0.023894463437159175
AENEQMLKP	9	Unmodified	_AENEQMLKP_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2607421875	2	530.260599	1058.50665	0.37255	0.00019755	0.14867	7.8832E-05	0.52122	0.00027638	530.2606762312006	29.688	0.6245	29.688	29.216	29.841	0					18	11	2	0	0	0	0.011034	1	10825	10825		110.79	51.424	1	8134500			1900	6063;18668	907	921	1908	1908					-0.020267975337219468
AENEQMLKP	9	Unmodified	_AENEQMLKP_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2609252929688	2	530.260599	1058.50665	0.2212	0.00011729	0.2045	0.00010844	0.42569	0.00022573	530.2606688804151	30.08	0.72278	29.796	29.254	29.976	-0.28453					30	13	3	0	0	0	0.07468	1	10951	10951		63.227	24.613	1	73437000			1901	6063;18668	907	921	1909	1909					-0.020267975337219468
AENEQMLKP	9	Unmodified	_AENEQMLKP_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S3	3	530.762451171875	2	530.260599	1058.50665	0.56918	0.00030181	-0.086318	-4.5771E-05	0.48286	0.00025604	530.2605836007721	30.14	0.79053	29.89	29.279	30.069	-0.24946					39	14	4	0	0	0	0.045679	1	10856	10856		76.825	27.27	1	26122000			1902	6063;18668	907	921	1910	1910					-0.020267975337219468
AENEQMLKP	9	Unmodified	_AENEQMLKP_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2605590820312	2	530.260599	1058.50665	0.40974	0.00021727	-0.31044	-0.00016462	0.099296	5.2653E-05	530.2604878769137	30.295	0.60937	29.938	29.441	30.05	-0.3571					18	13	3	0	0	0	0.11498	1	10900	10900		55.235	23.197	1	10301000			1903	6063;18668	907	921	1911	1911					-0.020267975337219468
AENEQMLKP	9	Oxidation (M)	_AENEQM(Oxidation (M))LKP_		AENEQM(1)LKP		AENEQM(77)LKP	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S3	3	538.257568359375	2	538.258056	1074.50156	0.39175	0.00021086	-1.0703	-0.0005761	-0.67855	-0.00036523	538.257686578638	23.065	0.45668	23.025	22.73	23.187	-0.03968					13	8	2	0	0	0	0.045679	2	8127	8092;8127		76.825	41.893	1	4480900			1904	6063;18668	907	922	1912;1913	1913		129			-0.03271101396353515
AENEYQTAI	9	Unmodified	_AENEYQTAI_					0	0	0		ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	519.7409057617188	2	519.740554	1037.46655	0.45479	0.00023637	-0.72457	-0.00037659	-0.26979	-0.00014022	519.7401608271265	34.528	0.20805	34.528	34.389	34.597	0					6	3	2	0	0	0	0.14171	1	12826	12826		49.933	7.8384	1	5477200			1905	2518	908	923	1914	1914					-0.050680209326628756
AENEYQTAI	9	Unmodified	_AENEYQTAI_					0	0	0		ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1038.474365234375	1	1038.47383	1037.46655	0.90738	0.00094229	-0.18325	-0.0001903	0.72413	0.000752	1038.4737907219942	34.634	0.30941	34.476	34.296	34.606	-0.15834					8	5	2	0	0	0	0.030723	1	12900	12900		85.642	20.406	1	29408000			1906	2518	908	923	1915	1915					-0.050680209326628756
AENEYQTAI	9	Unmodified	_AENEYQTAI_					0	0	0		ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7406005859375	2	519.740554	1037.46655	0.52732	0.00027407	-0.2017	-0.00010483	0.32561	0.00016923	519.7403547146487	34.617	0.36119	34.459	34.296	34.657	-0.15834					11	6	2	0	0	0	0.034046	1	12911	12911		82.529	27.756	1	16990000			1907	2518	908	923	1916	1916					-0.050680209326628756
AENEYQTAI	9	Unmodified	_AENEYQTAI_					0	0	0		ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	519.7401733398438	2	519.740554	1037.46655	0.12312	6.3988E-05	-0.45622	-0.00023711	-0.3331	-0.00017313	519.7403184185431	34.862	0.31229	34.565	34.388	34.7	-0.29707					12	5	3	0	0	0	0.59184	1	12842	12842		11.64	0.81637	1	6169500			1908	2518	908	923	1917	1917					-0.050680209326628756
AENEYQTAI	9	Unmodified	_AENEYQTAI_					0	0	0		ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1038.4749755859375	1	1038.47383	1037.46655	0.36145	0.00037536	0.46422	0.00048208	0.82567	0.00085744	1038.474448724782	34.828	0.36402	34.531	34.388	34.752	-0.29707					10	6	2	0	0	0	0.047849	1	12848	12848		75.761	4.6272	1	6387700			1909	2518	908	923	1918	1918					-0.050680209326628756
AENFSTATV	9	Unmodified	_AENFSTATV_					0	0	0		ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3;nc|ENSG00000198758|Q8TE67-2|EPS8L3	ENSG00000198758|ENST00000361965|EPS8L3	ENSG00000198758|ENST00000361965|EPS8L3	MULTI-MSMS	HCT116MG_D190212_S3	3	470.2247619628906	2	470.224539	938.434526	0.24506	0.00011523	0.012429	5.8445E-06	0.25748	0.00012108	470.22449053186017	37.165	0.31232	36.863	36.717	37.029	-0.30137					8	5	2	0	0	0	0.39063	1	13809	13809		23.148	8.5667	1	4335900			1910	6267	909	924	1919	1919					-0.037153886157966554
AENGQTAAVEF	11	Unmodified	_AENGQTAAVEF_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MSMS	HCT116MG_D190212_S3	3	568.3052368164062	2	568.76456	1135.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.517	1	40.215	39.715	40.715	-0.30161								0	0	0	0.81249	1	15044	15044		31.268	0.6318	1				1911	3639	910	925	1920	1920					-0.047769470126240776
AENIPVHLP	9	Unmodified	_AENIPVHLP_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	MSMS	HCT116MG_D190212_S2	2	495.27410888671875	2	495.274367	988.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.329	1	44.245	43.745	44.745	-0.084305								0	0	0	0.1947	1	16832	16832		47.749	9.7747	1				1912	9447	911	926	1921	1921					0.03945473788792242
AENITKHLP	9	Unmodified	_AENITKHLP_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1;ENST00000521939.5_1_5:167913503-167921691:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	511.7850341796875	2	511.785099	1021.55564	0.65532	0.00033538	-0.39761	-0.00020349	0.25771	0.00013189	511.7849594780784	28.72	0.47413	28.72	28.429	28.903	0					15	8	3	0	0	0	0.031831	1	10473	10473		84.522	34.968	1	21198000			1913	2399	912	927	1922	1922					0.04572858817505221
AENITKHLP	9	Unmodified	_AENITKHLP_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1;ENST00000521939.5_1_5:167913503-167921691:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	511.785400390625	2	511.785099	1021.55564	0.28299	0.00014483	0.03842	1.9663E-05	0.32142	0.0001645	511.7850846180543	29.153	0.40955	28.837	28.606	29.015	-0.31613					20	7	4	0	0	0	0.031831	1	10647	10647		84.522	29.019	1	203500000			1914	2399	912	927	1923	1923					0.04572858817505221
AENITKHLP	9	Unmodified	_AENITKHLP_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1;ENST00000521939.5_1_5:167913503-167921691:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	511.7856750488281	2	511.785099	1021.55564	0.28277	0.00014472	0.23136	0.00011841	0.51413	0.00026312	511.78512066779734	29.138	0.46848	28.916	28.629	29.098	-0.22195					18	8	3	0	0	0	0.022505	1	10536	10536		93.938	20.97	1	50361000			1915	2399	912	927	1924	1924					0.04572858817505221
AENITKHLP	9	Unmodified	_AENITKHLP_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1;ENST00000521939.5_1_5:167913503-167921691:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S4	4	511.7852783203125	2	511.785099	1021.55564	0.19598	0.0001003	0.36766	0.00018816	0.56364	0.00028846	511.78512349691425	29.304	0.36343	28.955	28.721	29.085	-0.34921					17	6	3	0	0	0	0.43775	1	10549	10549		20.454	3.3407	1	17708000			1916	2399	912	927	1925	1925					0.04572858817505221
AENIWQEQP	9	Unmodified	_AENIWQEQP_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7616577148438	2	557.76182	1113.50909	-0.14051	-7.8373E-05	0.21182	0.00011814	0.071305	3.9771E-05	557.7616503962031	43.196	0.30983	43.123	43.045	43.355	-0.073376					7	5	2	0	0	0	0.13387	1	16406	16406		63.961	27.833	1	20854000			1917	4306	913	928	1926	1926					-0.043126258044367205
AENIWQEQP	9	Unmodified	_AENIWQEQP_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	HCT116MG_D190212_S3	3	557.761962890625	2	557.76182	1113.50909	0.45616	0.00025443	0.50142	0.00027967	0.95759	0.00053411	557.7623207825536	43.468	0.51821	43.161	42.982	43.5	-0.30616					13	9	2	0	0	0	0.040372	1	16231	16231		96.367	37.688	1	10806000			1918	4306	913	928	1927	1927					-0.043126258044367205
AENIWQEQP	9	Unmodified	_AENIWQEQP_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MSMS	HCT116MG_D190212_S4	4	557.7617797851562	2	557.76182	1113.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.588	1	43.213	42.713	43.713	-0.37433								0	0	0	0.19023	1	16027	16027		59.368	0.68956	1				1919	4306	913	928	1928	1928					-0.043126258044367205
AENKIKRSTV	10	Unmodified	_AENKIKRSTV_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	HCT116MG_D190212_S1	1	573.3357543945312	2	573.335487	1144.65642	0.29874	0.00017128	0.82445	0.00047269	1.1232	0.00064397	573.3357645635809	51.761	0.31503	51.761	51.601	51.916	0					8	5	2	0	0	0	0.88076	1	19777	19777		3.2813	3.2813	1	19902000	+		1920	14286	914	929	1929	1929					0.089878908003584
AENKTVVAP	9	Unmodified	_AENKTVVAP_					0	0	0		ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	MULTI-MSMS	HCT116MG_D190212_S3	3	464.7588195800781	2	464.758549	927.502546	0.3146	0.00014621	0.041802	1.9428E-05	0.3564	0.00016564	464.75847778506625	23.686	0.20832	23.64	23.493	23.701	-0.046553					6	3	2	0	0	0	0.30117	1	8398	8398		30.637	3.0077	1	2087900			1921	3071	915	930	1930	1930					0.035894810348509054
AENLFRAF	8	Unmodified	_AENLFRAF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant;PRKDC|p.L201P|1|0.12|ENSG00000253729|chr8:47953826-47953826|A/G|missense_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	HCT116MG_D190212_S2	2	484.2536926269531	2	484.253434	966.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.779	1	52.592	52.092	53.092	-0.1877								0	0	0	0.23909	1	20282	20282		62.573	22.124	1				1922	6591	916	931	1931	1931					0.0077291810027873
AENLKGESA	9	Unmodified	_AENLKGESA_					0	0	0		nc|ENSG00000167110|Q08379|GOLGA2;GOLGA2|p.Y989Lfs*4|1|0.29|ENSG00000167110|chr9:128257110-128257111|-/A|frameshift_variant;GOLGA2|p.Y989Tfs*9|1|0.35|ENSG00000167110|chr9:128257111-128257111|A/-|frameshift_variant;ENSG00000167110|ENST00000611957|GOLGA2;nc|ENSG00000167110|Q08379-2|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	MULTI-MSMS	HCT116MG_D190212_S2	2	459.729736328125	2	459.729989	917.445425	-0.020357	-9.3587E-06	-0.10394	-4.7786E-05	-0.1243	-5.7145E-05	459.729778908071	18.203	0.31335	17.847	17.702	18.015	-0.35647					9	5	3	0	0	0	0.022505	1	6261	6261		93.938	27.481	1	11016000			1923	4906	917	932	1932	1932					-0.01659986241520528
AENLQWGKP	9	Unmodified	_AENLQWGKP_					0	0	0		ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	521.770263671875	2	521.769448	1041.52434	0.35548	0.00018548	0.59617	0.00031106	0.95165	0.00049654	521.7697882111052	36.339	0.52881	36.339	35.993	36.522	0					11	9	2	0	0	0	0.011034	2	13577	13477;13577		110.79	70.843	1	6513400			1924	7938	918	933	1933;1934	1934					0.005242857834218739
AENLQWGKP	9	Unmodified	_AENLQWGKP_					0	0	0		ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	521.7706298828125	2	521.769448	1041.52434	0.52514	0.000274	0.24904	0.00012994	0.77418	0.00040395	521.7694540449446	36.38	0.51785	36.252	35.916	36.434	-0.12799					18	9	3	0	0	0	0.0035136	2	13597	13557;13597		168.54	99.433	1	45212000			1925	7938	918	933	1935;1936	1936					0.005242857834218739
AENLQWGKP	9	Unmodified	_AENLQWGKP_					0	0	0		ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2724609375	2	521.769448	1041.52434	0.17936	9.3582E-05	1.4705	0.00076724	1.6498	0.00086082	521.7702588354232	36.59	0.72844	36.289	36.041	36.769	-0.30113					27	13	3	0	0	0	0.0068642	2	13510	13446;13510		121.35	61.272	1	8213400			1926	7938	918	933	1937;1938	1938					0.005242857834218739
AENLQWGKP	9	Unmodified	_AENLQWGKP_					0	0	0		ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	MSMS	HCT116MG_D190212_S4	4	521.7695922851562	2	521.769448	1041.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.776	1	36.391	35.891	36.891	-0.38486								0	0	0	0.2496	1	13471	13471		43.772	26.83	1				1927	7938	918	933	1939	1939					0.005242857834218739
AENLYIKG	8	Unmodified	_AENLYIKG_					0	0	0			REV__ENST00000563350.1_1_16:47460221-47493066:-|nuORF	REV__ENST00000563350.1_1_16:47460221-47493066:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	907.4893188476562	1	907.488359	906.481082	0.75609	0.00068615	0.78473	0.00071214	1.5408	0.0013983	907.4891730868159	26.892	0.2604	26.892	26.761	27.022	0					6	4	2	0	0	0	0.1772	1	9745	9745		78.149	10.806	1	11011000	+		1928	16511	919	934	1940	1940					0.024100960061332444
AENLYIKG	8	Unmodified	_AENLYIKG_					0	0	0			REV__ENST00000563350.1_1_16:47460221-47493066:-|nuORF	REV__ENST00000563350.1_1_16:47460221-47493066:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	906.9332275390625	1	907.488359	906.481082	0.75609	0.00068615	0.78473	0.00071214	1.5408	0.0013983	907.4891730868159	26.892	0.2604	26.892	26.761	27.022	0					6	4	2	0	0	0	0.2158	1	9781	9781		38.176	0	1	11011000	+		1929	16511	919	934	1941	1941					0.024100960061332444
AENNCRVM	8	Unmodified	_AENNCRVM_					0	0	0			REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2	REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2	MULTI-MSMS	HCT116MG_D190212_S1	1	936.404296875	1	936.402597	935.39532	1.1241	0.0010526	0.30408	0.00028474	1.4282	0.0013374	936.403059452792	17.521	0.31288	17.521	17.411	17.724	0					9	5	2	0	0	0	0.6854	1	6005	6005		24.674	1.5255	1	1903500	+		1930	12371	920	935	1942	1942					-0.07496135442670493
AENPDIFAV	9	Unmodified	_AENPDIFAV_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	975.4788818359375	1	975.478188	974.470912	0.73122	0.00071329	-0.12688	-0.00012377	0.60434	0.00058952	975.4778474418495	53.127	0.35891	53.127	52.948	53.307	0					13	6	3	0	0	0	0.041798	1	20348	20348		78.728	26.46	1	54578000			1931	3631	921	936	1943	1943					-0.017345117190984638
AENPDIFAV	9	Unmodified	_AENPDIFAV_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	975.4791259765625	1	975.478188	974.470912	0.52281	0.00050999	0.0062019	6.0498E-06	0.52901	0.00051604	975.4781337521162	53.387	0.6701	53.198	52.966	53.636	-0.18922					39	12	4	0	0	0	0.027442	1	20496	20496		88.954	27.596	1	354670000			1932	3631	921	936	1944	1944					-0.017345117190984638
AENPDIFAV	9	Unmodified	_AENPDIFAV_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	488.24310302734375	2	488.242732	974.470912	0.084744	4.1375E-05	0.28883	0.00014102	0.37357	0.00018239	488.2428786691021	53.387	0.46323	53.198	52.966	53.429	-0.18922					14	8	2	0	0	0	0.023938	1	20558	20558		92.491	21.358	1	22497000			1933	3631	921	936	1945	1945					-0.017345117190984638
AENPDIFAV	9	Unmodified	_AENPDIFAV_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	975.4788208007812	1	975.478188	974.470912	0.68078	0.00066409	0.10001	9.7557E-05	0.78079	0.00076165	975.4780928903175	53.625	0.57446	53.326	53.039	53.613	-0.29946					31	10	4	0	0	0	0.041798	1	20262	20262		78.728	26.46	1	64260000			1934	3631	921	936	1946	1946					-0.017345117190984638
AENPDIFAV	9	Unmodified	_AENPDIFAV_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	488.24267578125	2	488.242732	974.470912	0.23303	0.00011377	-0.196	-9.5694E-05	0.037032	1.8081E-05	488.2424789663488	53.573	0.4179	53.27	53.035	53.453	-0.30305					11	7	2	0	0	0	0.077982	1	20304	20304		62.573	18.714	1	4220900			1935	3631	921	936	1947	1947					-0.017345117190984638
AENPDIFAV	9	Unmodified	_AENPDIFAV_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	975.4788818359375	1	975.478188	974.470912	0.63671	0.0006211	-0.055197	-5.3844E-05	0.58151	0.00056725	975.4780591638483	53.622	0.4685	53.289	53.089	53.558	-0.33284					19	8	3	0	0	0	0.027442	1	20023	20023		88.954	27.596	1	16338000			1936	3631	921	936	1948	1948					-0.017345117190984638
AENPEHYIDI	10	Unmodified	_AENPEHYIDI_					0	0	0		ENST00000489338.6_1_6:88125312-88173965:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206;ENST00000296885.7_1_6:88117749-88144792:+|nuORF	ENST00000489338.6_1_6:88125312-88173965:+|nuORF	ENST00000489338.6_1_6:88125312-88173965:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	600.7803344726562	2	600.78021	1199.54587	1.2776	0.00076755	-0.13659	-8.2059E-05	1.141	0.00068549	600.7798307491727	41.734	0.64479	41.358	41.297	41.942	-0.37637					28	16	2	0	0	0	0.75066	1	15333	15333		16.149	3.1066	1	7076300			1937	6667	922	937	1949	1949					-0.04592373978516662
AENPEHYIDI	10	Unmodified	_AENPEHYIDI_					0	0	0		ENST00000489338.6_1_6:88125312-88173965:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206;ENST00000296885.7_1_6:88117749-88144792:+|nuORF	ENST00000489338.6_1_6:88125312-88173965:+|nuORF	ENST00000489338.6_1_6:88125312-88173965:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	600.78021	1199.54587	0.79605	0.00047825	1.8681	0.0011223	2.6642	0.0016006	600.7811631285032	41.402	0.56612	41.334	41.242	41.808	-0.068199	-0.061259	0.0021368	NaN	16.149	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8964100			1938	6667	922	937							-0.04592373978516662
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S1	1	503.2537536621094	2	503.253631	1004.49271	0.5666	0.00028514	-0.075593	-3.8042E-05	0.491	0.0002471	503.253487404624	29.243	0.36506	29.243	29.06	29.425	0					16	6	3	0	0	0	0.0063854	1	10665	10665		125.53	75.975	1	81870000			1939	4179	923	938	1950	1950					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S1	1	1005.5005493164062	1	1005.49999	1004.49271	0.97862	0.00098401	-1.085	-0.001091	-0.10641	-0.00010699	1005.4987276994759	29.243	0.26098	29.243	29.112	29.373	0					6	4	2	0	0	0	0.14362	1	10717	10717		49.554	24.563	1	4315000			1940	4179	923	938	1951	1951					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S2	2	503.2536926269531	2	503.253631	1004.49271	0.76372	0.00038434	-0.20712	-0.00010424	0.55659	0.00028011	503.2534377480717	29.615	0.46501	29.314	29.134	29.599	-0.30095					20	8	3	0	0	0	0.0096523	1	10851	10851		114.2	64.647	1	297690000			1941	4179	923	938	1952	1952					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S2	2	1005.5006713867188	1	1005.49999	1004.49271	0.88732	0.0008922	0.29346	0.00029508	1.1808	0.0011873	1005.5000873304017	29.612	0.30998	29.311	29.185	29.495	-0.30095					12	5	3	0	0	0	0.0051419	1	10858	10858		136.39	78.67	1	51464000			1942	4179	923	938	1953	1953					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S3	3	503.25372314453125	2	503.253631	1004.49271	0.53137	0.00026742	-0.12347	-6.2137E-05	0.4079	0.00020528	503.25349333593044	29.707	0.52774	29.47	29.187	29.715	-0.23655					22	9	4	0	0	0	0.016744	1	10786	10786		99.755	48.125	1	67298000			1943	4179	923	938	1954	1954					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S3	3	1005.50048828125	1	1005.49999	1004.49271	0.73986	0.00074393	-0.43052	-0.00043289	0.30934	0.00031104	1005.4995534846703	29.698	0.42337	29.462	29.292	29.715	-0.23655					10	7	2	0	0	0	0.012596	1	10817	10817		106.94	57.386	1	4640000			1944	4179	923	938	1955	1955					-0.009357069705288268
AENPGKYNI	9	Unmodified	_AENPGKYNI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S4	4	503.2811279296875	2	503.253631	1004.49271	0.27138	0.00013657	0.045679	2.2988E-05	0.31706	0.00015956	503.25348682433383	29.872	0.41596	29.516	29.285	29.701	-0.35657					14	7	3	0	0	0	0.066823	2	10781	10781;10791		66.457	28.281	1	16424000			1945	4179	923	938	1956;1957	1956					-0.009357069705288268
AENPGKYNIL	10	Unmodified	_AENPGKYNIL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S2	2	559.7952880859375	2	559.795663	1117.57677	0.47866	0.00026795	-0.36932	-0.00020675	0.10934	6.1206E-05	559.7954158240744	40.253	0.25979	40.18	40.05	40.31	-0.072838					8	4	2	0	0	0	0.072018	1	15202	15202		79.596	33.897	1	18271000			1946	4179	924	939	1958	1958					0.022688241263722375
AENPKLISA	9	Unmodified	_AENPKLISA_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	HCT116MG_D190212_S1	1	471.76629638671875	2	471.766374	941.518196	0.32435	0.00015302	-0.10409	-4.9106E-05	0.22026	0.00010391	471.76625420392344	29.559	0.52016	29.559	29.373	29.893	0					19	9	3	0	0	0	0.021544	1	10792	10792		94.909	35.54	1	39112000			1947	4588	925	940	1959	1959					0.045097675518945834
AENPKLISA	9	Unmodified	_AENPKLISA_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	HCT116MG_D190212_S2	2	471.7664794921875	2	471.766374	941.518196	-0.01249	-5.8924E-06	0.13781	6.5013E-05	0.12532	5.9121E-05	471.76636656556747	29.977	0.51624	29.693	29.46	29.976	-0.28453					29	9	4	0	0	0	0.0064513	1	11003	11003		124.95	48.128	1	326580000			1948	4588	925	940	1960	1960					0.045097675518945834
AENPKLISA	9	Unmodified	_AENPKLISA_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	HCT116MG_D190212_S2	2	942.5260009765625	1	942.525473	941.518196	0.40859	0.0003851	-0.0042232	-3.9805E-06	0.40436	0.00038112	942.5253081704541	30.023	0.46471	29.739	29.512	29.976	-0.28453					21	8	4	0	0	0	0.012343	1	11004	11004		107.56	45.961	1	78347000			1949	4588	925	940	1961	1961					0.045097675518945834
AENPKLISA	9	Unmodified	_AENPKLISA_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	HCT116MG_D190212_S3	3	471.7665710449219	2	471.766374	941.518196	0.32896	0.00015519	-0.16532	-7.7991E-05	0.16364	7.72E-05	471.7662638839272	30.031	0.52723	29.795	29.555	30.082	-0.23655					31	9	4	0	0	0	0.013592	1	10897	10897		104.48	36.646	1	212660000			1950	4588	925	940	1962	1962					0.045097675518945834
AENPKLISA	9	Unmodified	_AENPKLISA_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	HCT116MG_D190212_S3	3	942.5256958007812	1	942.525473	941.518196	0.72957	0.00068764	-0.1434	-0.00013516	0.58617	0.00055248	942.5252461515526	30.031	0.47216	29.795	29.61	30.082	-0.23655					19	8	3	0	0	0	0.0081783	1	10921	10921		117.84	56.236	1	27856000			1951	4588	925	940	1963	1963					0.045097675518945834
AENPKLISA	9	Unmodified	_AENPKLISA_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	HCT116MG_D190212_S4	4	472.2759704589844	2	471.766374	941.518196	0.20558	9.6984E-05	-0.17109	-8.0716E-05	0.034485	1.6269E-05	471.76627261305657	30.244	0.59439	29.886	29.545	30.139	-0.3571					37	22	4	0	0	0	0.018739	1	10940	10940		97.741	38.373	1	88955000			1952	4588	925	940	1964	1964					0.045097675518945834
AENPKLISA	9	Unmodified	_AENPKLISA_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	HCT116MG_D190212_S4	4	942.5255126953125	1	942.525473	941.518196	0.57257	0.00053966	0.090092	8.4914E-05	0.66266	0.00062458	942.5252577744324	30.21	0.31186	29.853	29.649	29.961	-0.3571					9	5	2	0	0	0	0.0060369	1	10944	10944		128.57	64.612	1	5859200			1953	4588	925	940	1965	1965					0.045097675518945834
AENPPPPPPP	10	Unmodified	_AENPPPPPPP_					0	0	0		nc|ENSG00000165244|Q7RTV3-2|ZNF367;ENSG00000165244|ENST00000375256|ZNF367	nc|ENSG00000165244|Q7RTV3-2|ZNF367	nc|ENSG00000165244|Q7RTV3-2|ZNF367	MSMS	HCT116MG_D190212_S1	1	506.7567138671875	2	506.758549	1011.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.91	1	22.91	22.41	23.41	0								0	0	0	0.89194	1	8134	8134		16.942	4.4107	1				1954	9531	926	941	1966	1966					-0.0027451896515913177
AENPQNTRA	9	Unmodified	_AENPQNTRA_					0	0	0		ENSG00000169087|ENST00000306103|HSPBAP1	ENSG00000169087|ENST00000306103|HSPBAP1	ENSG00000169087|ENST00000306103|HSPBAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	500.74407958984375	2	500.743962	999.473371	0.2854	0.00014291	-0.1365	-6.8352E-05	0.1489	7.4562E-05	500.74391512033515	15.358	0.46862	15.031	14.758	15.227	-0.32684					20	8	3	0	0	0	0.01386	1	5074	5074		103.82	56.075	1	10702000			1955	5050	927	942	1967	1967					-0.026386632614276095
AENPSPRSP	9	Unmodified	_AENPSPRSP_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MSMS	HCT116MG_D190212_S1	1	477.735107421875	2	477.735606	953.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.798	1	17.798	17.298	18.298	0								0	0	0	0.76759	1	6080	6080		9.3831	0.035688	1				1956	3815	928	943	1968	1968					-0.021931641473884156
AENPSPRSP	9	Unmodified	_AENPSPRSP_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-MSMS	HCT116MG_D190212_S2	2	477.7351379394531	2	477.735606	953.456658	0.021534	1.0287E-05	0.073712	3.5215E-05	0.095246	4.5502E-05	477.7356007696792	18.31	0.73132	17.947	17.434	18.165	-0.36325					19	13	2	0	0	0	0.090581	1	6248	6248		60.074	20.124	1	5191100			1957	3815	928	943	1969	1969					-0.021931641473884156
AENQAESRAA	10	Unmodified	_AENQAESRAA_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	HCT116MG_D190212_S2	2	523.7468872070312	2	523.746702	1045.47885	0.25158	0.00013176	0.3583	0.00018766	0.60988	0.00031942	523.7467955561581	11.657	0.14731	11.375	11.321	11.469	-0.28186					7	5	2	0	0	0	0.73519	1	3785	3785		17.443	3.0373	1	337470			1958	3211	929	944	1970	1970					-0.04206984469624331
AENQAESRAA	10	Unmodified	_AENQAESRAA_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	HCT116MG_D190212_S2	2	523.7470092773438	2	523.746702	1045.47885	0.25133	0.00013164	-0.21568	-0.00011296	0.035659	1.8676E-05	523.7466044990782	14.59	0.20877	14.27	14.14	14.349	-0.31952					6	3	2	0	0	0	0.65915	1	4806	4806		23.801	6.6882	1	5149100			1959	3211	929	944	1971	1971					-0.04206984469624331
AENQRITAV	9	Unmodified	_AENQRITAV_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2724304199219	2	501.272355	1000.53016	0.49172	0.00024648	0.055828	2.7985E-05	0.54755	0.00027447	501.2722984935724	26.214	0.31298	26.214	26.032	26.345	0					8	5	2	0	0	0	0.031831	1	9471	9471		84.522	33.667	1	17062000			1960	5408	930	945	1972	1972					0.029913842950691105
AENQRITAV	9	Unmodified	_AENQRITAV_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2724914550781	2	501.272355	1000.53016	0.34322	0.00017205	0.28097	0.00014084	0.6242	0.00031289	501.27244982595766	26.567	0.41466	26.206	25.921	26.335	-0.36164					16	7	3	0	0	0	0.012343	1	9623	9623		107.56	39.483	1	62096000			1961	5408	930	945	1973	1973					0.029913842950691105
AENQRITAV	9	Unmodified	_AENQRITAV_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S3	3	501.27294921875	2	501.272355	1000.53016	0.56217	0.0002818	0.13228	6.6311E-05	0.69446	0.00034811	501.2724438546417	26.274	0.52126	26.124	25.838	26.359	-0.14924					16	9	3	0	0	0	0.060947	1	9395	9395		69.338	23.639	1	14486000			1962	5408	930	945	1974	1974					0.029913842950691105
AENQRITAV	9	Unmodified	_AENQRITAV_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S4	4	501.272216796875	2	501.272355	1000.53016	0.28096	0.00014084	-0.74371	-0.0003728	-0.46275	-0.00023196	501.27202760043303	26.544	0.20798	26.243	26.13	26.338	-0.30087					5	3	2	0	0	0	0.051033	1	9479	9479		74.2	24.267	1	1831600			1963	5408	930	945	1975	1975					0.029913842950691105
AENRGAVVV	9	Unmodified	_AENRGAVVV_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant;TANC1|p.E735Lfs*10|1|0.14|ENSG00000115183|chr2:159178846-159178847|-/TC|frameshift_variant	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MSMS	HCT116MG_D190212_S2	2	457.75640869140625	2	457.756341	913.498129	0.42969	0.00019669	0.061006	2.7926E-05	0.4907	0.00022462	457.75616474346697	27.404	0.36179	27.062	26.881	27.243	-0.34201					10	6	2	0	0	0	0.01405	1	9957	9957		103.35	35.273	1	25444000			1964	2449	931	946	1976	1976					0.03792016611953386
AENRGAVVV	9	Unmodified	_AENRGAVVV_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.E735Sfs*8|1|0.27|ENSG00000115183|chr2:159178847-159178850|TCTC/-|frameshift_variant;TANC1|p.E735Lfs*10|1|0.14|ENSG00000115183|chr2:159178846-159178847|-/TC|frameshift_variant	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MSMS	HCT116MG_D190212_S3	3	457.7566833496094	2	457.756341	913.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.077	1	26.907	26.407	27.407	-0.16933								0	0	0	0.32687	1	9742	9742		38.176	3.9882	1				1965	2449	931	946	1977	1977					0.03792016611953386
AENRPAVKA	9	Unmodified	_AENRPAVKA_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811775-67815272:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-MSMS	HCT116MG_D190212_S1	1	478.7252197265625	2	478.269616	954.524678	0.21305	0.0001019	-0.49155	-0.0002351	-0.2785	-0.0001332	478.2693034245899	16.759	0.1561	16.759	16.681	16.837	0					4	2	2	0	0	0	0.35842	1	5652	5652		24.991	10.153	1	1858400			1966	2257	932	947	1978	1978					0.04559705503265832
AENRPAVKA	9	Unmodified	_AENRPAVKA_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811775-67815272:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-MSMS	HCT116MG_D190212_S2	2	478.2696533203125	2	478.269616	954.524678	0.23384	0.00011184	0.069471	3.3226E-05	0.30331	0.00014506	478.2695624950794	17.353	0.20919	17.004	16.873	17.082	-0.34933					8	3	3	0	0	0	0.01386	1	5902	5902		103.82	60.051	1	24360000			1967	2257	932	947	1979	1979					0.04559705503265832
AENRPAVKA	9	Unmodified	_AENRPAVKA_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811775-67815272:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-MSMS	HCT116MG_D190212_S3	3	478.2696228027344	2	478.269616	954.524678	0.166	7.9392E-05	0.18282	8.744E-05	0.34882	0.00016683	478.2696304886477	15.932	0.25998	16.018	15.873	16.133	0.085424					6	4	2	0	0	0	0.16285	1	5268	5268		45.74	24.203	1	3802100			1968	2257	932	947	1980	1980					0.04559705503265832
AENRPAVKAA	10	Unmodified	_AENRPAVKAA_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811775-67815272:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MULTI-MSMS	HCT116MG_D190212_S2	2	513.788330078125	2	513.788173	1025.56179	0.22508	0.00011564	-0.3498	-0.00017973	-0.12472	-6.4081E-05	513.7876804217715	16.709	0.31252	16.368	16.204	16.516	-0.34183					8	5	2	0	0	0	0.63124	1	5680	5680		26.021	0.62139	1	5016500			1969	2257	933	948	1981	1981					0.05003377049024493
AENSGTTVV	9	Unmodified	_AENSGTTVV_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-MSMS	HCT116MG_D190212_S3	3	877.4259643554688	1	877.426152	876.418876	0.89519	0.00078546	-0.16967	-0.00014887	0.72552	0.00063659	877.4259750049324	25.318	0.31227	25.212	25.048	25.36	-0.10618					7	5	2	0	0	0	0.066823	1	9052	9052		66.457	22.05	1	4504000			1970	1792	934	949	1982	1982					-0.024276751328443424
AENSRLQTP	9	Unmodified	_AENSRLQTP_					0	0	0		NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant;NES|p.V1249Cfs*11|1|0.37|ENSG00000132688|chr1:156670443-156670443|C/-|frameshift_variant;NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	508.2620849609375	2	508.261988	1014.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.12	1	23.74	23.24	24.24	-0.3803								0	0	0	0.04525	1	8629	8629		71.708	15.531	1				1971	3202	935	950	1983	1983					0.0027479391541191944
AENSRLQTP	9	Unmodified	_AENSRLQTP_					0	0	0		NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant;NES|p.V1249Cfs*11|1|0.37|ENSG00000132688|chr1:156670443-156670443|C/-|frameshift_variant;NES|p.P1439Qfs*11|1|0.19|ENSG00000132688|chr1:156669874-156669874|C/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	NES|p.A1050Pfs*14|1|0.36|ENSG00000132688|chr1:156671040-156671040|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	508.26226806640625	2	508.261988	1014.50942	0.23052	0.00011716	0.16278	8.2734E-05	0.3933	0.0001999	508.2620489208211	23.61	0.57314	23.57	23.135	23.708	-0.03968					18	10	2	0	0	0	0.13387	1	8295	8295		51.488	18.702	1	3416900			1972	3202	935	950	1984	1984					0.0027479391541191944
AENVAVPEA	9	Unmodified	_AENVAVPEA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	HCT116MG_D190212_S2	2	899.4476318359375	1	899.446888	898.439611	1.207	0.0010856	-0.19103	-0.00017182	1.0159	0.00091377	899.4465169313543	31.733	0.41443	31.484	31.25	31.665	-0.24883					17	7	3	0	0	0	0.034046	1	11706	11706		82.529	21.172	1	100140000			1973	2066	936	951	1985	1985					-0.013670847532011976
AENVAVPEA	9	Unmodified	_AENVAVPEA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	HCT116MG_D190212_S2	2	450.2271423339844	2	450.227082	898.439611	0.35196	0.00015846	-0.13484	-6.0707E-05	0.21712	9.7754E-05	450.2269199263382	31.733	0.36276	31.484	31.302	31.665	-0.24883					11	6	3	0	0	0	0.034046	1	11724	11724		82.529	11.396	1	26259000			1974	2066	936	951	1986	1986					-0.013670847532011976
AENVAVPEA	9	Unmodified	_AENVAVPEA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	HCT116MG_D190212_S3	3	899.4478759765625	1	899.446888	898.439611	0.81806	0.0007358	0.064797	5.8281E-05	0.88286	0.00079408	899.4467843177102	31.83	0.52025	31.559	31.326	31.846	-0.27027					20	9	4	0	0	0	0.034046	1	11614	11614		82.529	21.172	1	55231000			1975	2066	936	951	1987	1987					-0.013670847532011976
AENVAVPEA	9	Unmodified	_AENVAVPEA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	HCT116MG_D190212_S3	3	450.2265930175781	2	450.227082	898.439611	0.0059533	2.6803E-06	0.070124	3.1572E-05	0.076077	3.4252E-05	450.2270064646523	31.83	0.41666	31.56	31.273	31.69	-0.27028					16	7	3	0	0	0	0.034046	1	11634	11634		82.529	11.396	1	17777000			1976	2066	936	951	1988	1988					-0.013670847532011976
AENVAVPEA	9	Unmodified	_AENVAVPEA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	HCT116MG_D190212_S4	4	899.4466552734375	1	899.446888	898.439611	0.58773	0.00052863	0.0027545	2.4776E-06	0.59049	0.00053111	899.4467389262321	31.939	0.5191	31.564	31.33	31.849	-0.37529					20	9	3	0	0	0	0.053544	1	11594	11594		72.968	11.61	1	24068000			1977	2066	936	951	1989	1989					-0.013670847532011976
AENVAVPEA	9	Unmodified	_AENVAVPEA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	HCT116MG_D190212_S4	4	450.226318359375	2	450.227082	898.439611	0.21184	9.5378E-05	-0.33355	-0.00015017	-0.12171	-5.4796E-05	450.22685401038973	31.937	0.36336	31.562	31.382	31.745	-0.37529					14	6	3	0	0	0	0.061422	1	11601	11601		69.105	7.7474	1	9905100			1978	2066	936	951	1990	1990					-0.013670847532011976
AENVAVPEA	9	Unmodified	_AENVAVPEA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MATCH	HCT116MG_D190212_S1	1		2	450.227082	898.439611	0.18363	8.2673E-05	-0.1631	-7.3431E-05	0.020529	9.2426E-06	450.22683233185853	31.539	0.20826	31.539	31.44	31.648	0	0.0029928	-2.4772E-05	NaN	82.529	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2875600			1979	2066	936	951							-0.013670847532011976
AENVCNPFYLG	11	Unmodified	_AENVCNPFYLG_					0	0	0		ENST00000602172.1_1_19:48761247-48761370:+|nuORF	ENST00000602172.1_1_19:48761247-48761370:+|nuORF	ENST00000602172.1_1_19:48761247-48761370:+|nuORF	MSMS	HCT116MG_D190212_S3	3	613.781005859375	2	613.779156	1225.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.897	1	25.769	25.269	26.269	-0.12795								0	0	0	0.94012	1	9267	9267		11.495	2.1116	1				1980	9094	937	952	1991	1991					-0.059991259879780046
AENVFFVA	8	Unmodified	_AENVFFVA_					0	0	0		ENST00000510445.1_1_5:93120070-93217196:-|nuORF;nc|ENSG00000113391|Q8WUF8-4|ARB2A;FAM172A|p.V310Afs*9|1|0.04|ENSG00000113391|chr5:93784477-93784478|-/GTGCTGAGATGAATGGGTGTGAG|frameshift_variant;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	ENST00000510445.1_1_5:93120070-93217196:-|nuORF	ENST00000510445.1_1_5:93120070-93217196:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	896.77294921875	1	896.451245	895.443968	1.0448	0.00093661	-0.13161	-0.00011798	0.91319	0.00081863	896.4510775483623	55.454	0.21217	55.162	55.031	55.243	-0.2918					5	3	2	0	0	0	0.40176	2	21022	21022;21062		49.933	7.9221	1	6067200			1981	2385	938	953	1992;1993	1992					-0.007935755396260902
AENVFFVAH	9	Unmodified	_AENVFFVAH_					0	0	0		ENST00000510445.1_1_5:93120070-93217196:-|nuORF;nc|ENSG00000113391|Q8WUF8-4|ARB2A;FAM172A|p.V310Afs*9|1|0.04|ENSG00000113391|chr5:93784477-93784478|-/GTGCTGAGATGAATGGGTGTGAG|frameshift_variant;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	ENST00000510445.1_1_5:93120070-93217196:-|nuORF	ENST00000510445.1_1_5:93120070-93217196:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	517.259033203125	2	517.258717	1032.50288	0.39863	0.0002062	-0.29683	-0.00015354	0.1018	5.2659E-05	517.2583713899159	45.01	0.26202	44.917	44.787	45.049	-0.092472					6	4	2	0	0	0	0.1037	1	17139	17139		57.471	40.529	1	11656000			1982	2385	939	954	1994	1994					-0.012070992453118379
AENVMQIHA	9	Unmodified	_AENVMQIHA_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENST00000555311.1_1_14:31578566-31578662:-|nuORF	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	HCT116MG_D190212_S2	2	506.7475280761719	2	506.747659	1011.48076	0.58583	0.00029687	-0.037871	-1.9191E-05	0.54795	0.00027767	506.74767451730537	35.709	0.30861	35.566	35.437	35.746	-0.14245					6	5	2	0	0	0	0.047849	1	13356	13356		75.761	46.679	1	28843000			1983	1575	940	955	1995	1995					-0.024516469853665512
AENVMQIHA	9	Unmodified	_AENVMQIHA_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;ENST00000555311.1_1_14:31578566-31578662:-|nuORF	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MSMS	HCT116MG_D190212_S3	3	506.7481994628906	2	506.747659	1011.48076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.971	1	35.671	35.171	36.171	-0.30042								0	0	0	0.27628	1	13275	13275		41.84	25.992	1				1984	1575	940	955	1996	1996					-0.024516469853665512
AENYDIPSA	9	Unmodified	_AENYDIPSA_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	HCT116MG_D190212_S3	3	979.4368896484375	1	979.436717	978.429441	0.99697	0.00097647	-0.70442	-0.00068993	0.29256	0.00028654	979.435964416908	35.744	0.26064	35.445	35.314	35.575	-0.29922					15	9	2	0	0	0	0.090581	1	13170	13170		60.074	16.216	1	14215000			1985	3117	941	956	1997	1997					-0.060636924784148505
AENYDIPSA	9	Unmodified	_AENYDIPSA_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	HCT116MG_D190212_S4	4	979.4363403320312	1	979.436717	978.429441	0.82222	0.00080532	-0.25182	-0.00024664	0.5704	0.00055867	979.4364672954422	35.782	0.20546	35.396	35.32	35.526	-0.38606					14	10	2	0	0	0	0.090581	1	13078	13078		60.074	16.216	1	8565400			1986	3117	941	956	1998	1998					-0.060636924784148505
AENYLGHTA	9	Unmodified	_AENYLGHTA_					0	0	0		ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENSG00000113013|ENST00000297185|HSPA9	ENSG00000113013|ENST00000297185|HSPA9	MULTI-MSMS	HCT116MG_D190212_S1	1	488.23028564453125	2	488.230156	974.445759	0.26862	0.00013115	0.33603	0.00016406	0.60466	0.00029521	488.23029993978605	27.188	0.26037	27.188	27.022	27.282	0					7	4	2	0	0	0	0.069315	1	9889	9889		65.235	34.598	1	4450000			1987	2366	942	957	1999	1999					-0.04248566521653174
AENYLGHTA	9	Unmodified	_AENYLGHTA_					0	0	0		ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENSG00000113013|ENST00000297185|HSPA9	ENSG00000113013|ENST00000297185|HSPA9	MULTI-MSMS	HCT116MG_D190212_S2	2	488.23028564453125	2	488.230156	974.445759	0.33531	0.00016371	1.2085	0.00059004	1.5438	0.00075375	488.23035403695786	27.606	0.31013	27.264	27.139	27.449	-0.34201					12	5	3	0	0	0	0.0080847	1	10043	10043		118.07	57.994	1	52014000			1988	2366	942	957	2000	2000					-0.04248566521653174
AENYLGHTA	9	Unmodified	_AENYLGHTA_					0	0	0		ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENSG00000113013|ENST00000297185|HSPA9	ENSG00000113013|ENST00000297185|HSPA9	MULTI-MSMS	HCT116MG_D190212_S3	3	488.2308349609375	2	488.230156	974.445759	0.27042	0.00013203	0.20015	9.7718E-05	0.47056	0.00022974	488.23021918707343	27.471	0.26011	27.302	27.172	27.432	-0.16933					11	4	3	0	0	0	0.0068427	1	9904	9904		121.53	67.701	1	17463000			1989	2366	942	957	2001	2001					-0.04248566521653174
AENYLGHTA	9	Unmodified	_AENYLGHTA_					0	0	0		ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENSG00000113013|ENST00000297185|HSPA9	ENSG00000113013|ENST00000297185|HSPA9	MULTI-MSMS	HCT116MG_D190212_S4	4	488.2301025390625	2	488.230156	974.445759	-0.04538	-2.2156E-05	0.55701	0.00027195	0.51163	0.00024979	488.2303550896925	27.694	0.25009	27.372	27.252	27.502	-0.32157					7	4	2	0	0	0	0.012596	2	9926	9897;9926		106.94	52.167	1	6216100			1990	2366	942	957	2002;2003	2003					-0.04248566521653174
AENYYAGEY	9	Unmodified	_AENYYAGEY_					0	0	0			REV__ENSG00000129152|ENST00000250003|MYOD1	REV__ENSG00000129152|ENST00000250003|MYOD1	MSMS	HCT116MG_D190212_S1	1	540.2196044921875	2	540.219454	1078.42436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.996	1	35.996	35.496	36.496	0								0	0	0	0.76603	1	13408	13408		14.838	0.93222	1		+		1991	11886	943	958	2004	2004					-0.1117199634102235
AEPDANQKAEA	11	Unmodified	_AEPDANQKAEA_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	HCT116MG_D190212_S2	2	572.2679443359375	2	572.267467	1142.52038	0.30603	0.00017513	0.45892	0.00026263	0.76495	0.00043776	572.2675604001561	16.107	0.78274	15.773	15.533	16.315	-0.33451					34	14	3	0	0	0	0.037919	2	5390	5390;5454		118.21	62.707	1	7993700			1992	1159	944	959	2005;2006	2005					-0.04517848500927357
AEPDANQKAEA	11	Unmodified	_AEPDANQKAEA_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	HCT116MG_D190212_S3	3	572.2674560546875	2	572.267467	1142.52038	0.46829	0.00026799	0.13176	7.54E-05	0.60005	0.00034339	572.2674969024562	15.307	0.67678	15.39	15.142	15.819	0.083271					21	12	2	0	0	0	0.25847	1	5018	5018		68.76	35.974	1	2677600			1993	1159	944	959	2007	2007					-0.04517848500927357
AEPDANQKAEA	11	Unmodified	_AEPDANQKAEA_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MSMS	HCT116MG_D190212_S4	4	572.2658081054688	2	572.267467	1142.52038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.399	1	15.237	14.737	15.737	-0.16173								0	0	0	0.94493	1	4961	4961		8.9762	1.3673	1				1994	1159	944	959	2008	2008					-0.04517848500927357
AEPDHLREA	9	Unmodified	_AEPDHLREA_					0	0	0		ENSG00000081721|ENST00000367943|DUSP12	ENSG00000081721|ENST00000367943|DUSP12	ENSG00000081721|ENST00000367943|DUSP12	MULTI-MSMS	HCT116MG_D190212_S1	1	519.25439453125	2	519.254163	1036.49377	0.27159	0.00014102	-0.086891	-4.5118E-05	0.1847	9.5907E-05	519.2541467744215	19.261	0.26016	19.261	19.131	19.391	0					6	4	2	0	0	0	0.28785	1	6681	6681		32.037	4.4087	1	3069300			1995	1415	945	960	2009	2009					-0.0230149260160033
AEPDHLREA	9	Unmodified	_AEPDHLREA_					0	0	0		ENSG00000081721|ENST00000367943|DUSP12	ENSG00000081721|ENST00000367943|DUSP12	ENSG00000081721|ENST00000367943|DUSP12	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2539672851562	2	519.254163	1036.49377	0.2691	0.00013973	0.18702	9.711E-05	0.45612	0.00023684	519.2539378932274	19.855	0.2592	19.48	19.351	19.61	-0.37503					9	4	3	0	0	0	0.12465	1	6922	6922		53.317	7.6171	1	16692000			1996	1415	945	960	2010	2010					-0.0230149260160033
AEPGALASA	9	Unmodified	_AEPGALASA_					0	0	0		ENST00000304771.7_1_11:75378785-75379403:-|nuORF	ENST00000304771.7_1_11:75378785-75379403:-|nuORF	ENST00000304771.7_1_11:75378785-75379403:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	786.3994750976562	1	786.399209	785.391933	0.82756	0.00065079	-0.14355	-0.00011289	0.68401	0.0005379	786.3989378126122	29.622	0.31552	29.385	29.239	29.555	-0.23655					7	5	2	0	0	0	0.023611	1	10789	10789		92.822	0	1	5864600			1997	7020	946	961	2011	2011					-0.009347389533900241
AEPGQQQPAA	10	Unmodified	_AEPGQQQPAA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MSMS	HCT116MG_D190212_S1	1	498.7406921386719	2	498.740888	995.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.84	1	17.84	17.34	18.34	0								0	0	0	0.84701	1	6097	6097		22.736	6.5872	1				1998	2066	947	962	2012	2012					-0.030691814929582506
AEPGQQQPAA	10	Unmodified	_AEPGQQQPAA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7413024902344	2	498.740888	995.467223	0.299	0.00014912	-0.26677	-0.00013305	0.03223	1.6074E-05	498.7407390385368	18.064	0.83566	17.707	17.336	18.172	-0.35647					30	15	3	0	0	0	0.033024	1	6140	6140		99.799	38.441	1	13427000			1999	2066	947	962	2013	2013					-0.030691814929582506
AEPGQQQPAA	10	Unmodified	_AEPGQQQPAA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	HCT116MG_D190212_S3	3	498.740234375	2	498.740888	995.467223	0.10368	5.171E-05	-0.076028	-3.7918E-05	0.027654	1.3792E-05	498.74076849925814	17.56	0.83233	17.642	17.325	18.158	0.081356					33	15	3	0	0	0	0.052106	1	5860	5860		85.642	33.373	1	6594600			2000	2066	947	962	2014	2014					-0.030691814929582506
AEPHSTPGHP	10	Unmodified	_AEPHSTPGHP_					0	0	0		ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	MULTI-MSMS	HCT116MG_D190212_S1	1	515.3550415039062	2	515.241055	1028.46756	0.42128	0.00021706	-0.035951	-1.8524E-05	0.38533	0.00019854	515.742588537681	18.167	0.31293	18.167	18.037	18.35	0					7	5	2	0	0	0	0.86862	1	6264	6264		6.2058	0	1	1104100			2001	5562	948	963	2015	2015					-0.0455376177310427
AEPILGQVVH	10	Unmodified	_AEPILGQVVH_					0	0	0			REV__ENST00000323853.9_1_2:96943304-96943406:-|nuORF	REV__ENST00000323853.9_1_2:96943304-96943406:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	531.8003540039062	2	531.800749	1061.58694	0.45908	0.00024414	-0.18045	-9.5963E-05	0.27863	0.00014818	531.8004199646799	41.863	0.16706	41.487	41.413	41.58	-0.37637					5	3	2	0	0	0	0.74568	1	15381	15381		25.399	4.9848	1	3195400	+		2002	14893	949	964	2016	2016					0.058614318515992636
AEPLLVRHP	9	Unmodified	_AEPLLVRHP_					0	0	0		ENSG00000102901|ENST00000562787|CENPT;ENST00000574569.1_1_16:67862375-67862787:-|nuORF;ENST00000569862.5_1_16:67862172-67864187:-|nuORF;ENST00000562513.6_1_16:67862078-67865741:-|nuORF;ENST00000436104.6_1_16:67862410-67864187:-|nuORF;ENST00000568495.5_1_16:67862172-67864127:-|nuORF	ENSG00000102901|ENST00000562787|CENPT	ENSG00000102901|ENST00000562787|CENPT	MSMS	HCT116MG_D190212_S4	4	516.3010864257812	2	516.303458	1030.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.717	1	45.344	44.844	45.844	-0.37238								0	0	0	0.768	1	16874	16874		7.9102	3.1541	1				2003	1857	950	965	2017	2017					0.07829155434069435
AEPLRSKVY	9	Unmodified	_AEPLRSKVY_					0	0	0			REV__ENST00000480117.1_1_3:160600062-160753635:+|nuORF	REV__ENST00000480117.1_1_3:160600062-160753635:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	531.2363891601562	2	531.800749	1061.58694	0.45908	0.00024414	-0.18045	-9.5963E-05	0.27863	0.00014818	531.8004199646799	41.863	0.16706	41.487	41.413	41.58	-0.37637					5	3	2	0	0	0	0.22781	1	15348	15348		11.64	0	1	3195400	+		2004	12933	951	966	2018	2018					0.05861431851622001
AEPMRARAPP	10	Unmodified	_AEPMRARAPP_					0	0	0		ENST00000375344.7_1_9:97136898-97137102:+|nuORF	ENST00000375344.7_1_9:97136898-97137102:+|nuORF	ENST00000375344.7_1_9:97136898-97137102:+|nuORF	MSMS	HCT116MG_D190212_S1	1	548.2909545898438	2	548.290025	1094.5655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.141	1	36.141	35.641	36.641	0								0	0	0	0.93854	1	13466	13466		7.2892	0.56607	1				2005	7508	952	967	2019	2019					0.02199723551234456
AEPNFTSQQP	10	Unmodified	_AEPNFTSQQP_					0	0	0			REV__ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	REV__ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	559.7596435546875	2	559.759278	1117.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.451	1	38.07	37.57	38.57	-0.38163								0	0	0	0.94925	1	14093	14093		4.897	0.141	1		+		2006	13985	953	968	2020	2020					-0.05004929667029501
AEPNGVME	8	Unmodified	_AEPNGVME_					0	0	0			REV__ENST00000255198.2_2_5:76373702-76374514:-|nuORF	REV__ENST00000255198.2_2_5:76373702-76374514:-|nuORF	MSMS	HCT116MG_D190212_S2	2	423.6849060058594	2	423.686736	845.358918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.636	1	22.251	21.751	22.751	-0.3852								0	0	0	0.79325	1	8029	8029		23.148	5.0134	1		+		2007	14605	954	969	2021	2021					-0.06994689067732907
AEPNYHSLP	9	Unmodified	_AEPNYHSLP_					0	0	0		ENST00000541403.1_1_11:71809825-71814270:-|nuORF;ENST00000535872.1_1_11:71808870-71814295:-|nuORF;ENST00000539797.5_1_11:71808870-71811703:-|nuORF;ENSG00000149357|ENST00000278671|LAMTOR1	ENST00000541403.1_1_11:71809825-71814270:-|nuORF	ENST00000541403.1_1_11:71809825-71814270:-|nuORF	MSMS	HCT116MG_D190212_S3	3	514.2460327148438	2	514.245806	1026.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.19	1	43.883	43.383	44.383	-0.30759								0	0	0	0.76781	1	16512	16512		8.5933	0.68312	1				2008	4058	955	970	2022	2022					-0.03511993487563814
AEPPMWRIP	9	Unmodified	_AEPPMWRIP_					0	0	0			REV__nc|ENSG00000185483|Q01973-2|ROR1	REV__nc|ENSG00000185483|Q01973-2|ROR1	MSMS	HCT116MG_D190212_S4	4	548.7848510742188	2	548.784044	1095.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.505	1	32.126	31.626	32.626	-0.37924								0	0	0	0.76575	1	11842	11842		15.847	2.8047	1		+		2009	13847	956	971	2023	2023					0.009581068080478872
AEPPPRPPP	9	Unmodified	_AEPPPRPPP_					0	0	0		ENST00000602258.1_1_19:48204415-48205669:+|nuORF;nc|ENSG00000063169|Q9NZM4-2|BICRA;ENSG00000063169|ENST00000594866|BICRA	ENST00000602258.1_1_19:48204415-48205669:+|nuORF	ENST00000602258.1_1_19:48204415-48205669:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	479.2008361816406	2	479.261259	956.507966	0.11211	5.3732E-05	0.021337	1.0226E-05	0.13345	6.3958E-05	479.26118646682625	20.422	1.9856	20.471	19.738	21.724	0.048107					71	37	3	0	0	0	0.35128	1	7301	7301		25.399	2.2509	1	8694200			2010	1127	957	972	2024	2024					0.027972046173204035
AEPPPRPPP	9	Unmodified	_AEPPPRPPP_					0	0	0		ENST00000602258.1_1_19:48204415-48205669:+|nuORF;nc|ENSG00000063169|Q9NZM4-2|BICRA;ENSG00000063169|ENST00000594866|BICRA	ENST00000602258.1_1_19:48204415-48205669:+|nuORF	ENST00000602258.1_1_19:48204415-48205669:+|nuORF	MSMS	HCT116MG_D190212_S3	3	479.26129150390625	2	479.261259	956.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.719	1	26.57	26.07	27.07	-0.14924								0	0	0	0.76641	1	9598	9598		13.508	0.97634	1				2011	1127	957	972	2025	2025					0.027972046173204035
AEPPPRPPP	9	Unmodified	_AEPPPRPPP_					0	0	0		ENST00000602258.1_1_19:48204415-48205669:+|nuORF;nc|ENSG00000063169|Q9NZM4-2|BICRA;ENSG00000063169|ENST00000594866|BICRA	ENST00000602258.1_1_19:48204415-48205669:+|nuORF	ENST00000602258.1_1_19:48204415-48205669:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	479.26116943359375	2	479.261259	956.507966	0.39003	0.00018693	-0.39118	-0.00018748	-0.0011484	-5.504E-07	479.2609985947082	20.594	1.4546	20.393	19.885	21.339	-0.20133					46	27	2	0	0	0	0.33687	1	7166	7166		26.884	0.61551	1	3457500			2012	1127	957	972	2026	2026					0.027972046173204035
AEPQTLAPP	9	Unmodified	_AEPQTLAPP_					0	0	0			REV__PDLIM4|p.S169Afs*50|1|0.33|ENSG00000131435|chr5:132271086-132271086|C/-|frameshift_variant	REV__PDLIM4|p.S169Afs*50|1|0.33|ENSG00000131435|chr5:132271086-132271086|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	462.24432373046875	2	462.245275	922.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.054	1	17.698	17.198	18.198	-0.35647								0	0	0	0.76669	1	6182	6182		12.532	1.7076	1		+		2013	17403	958	973	2027	2027					0.011657921435244134
AEPQWHLAP	9	Unmodified	_AEPQWHLAP_					0	0	0			REV__ENST00000461023.5_1_16:338124-339729:-|nuORF	REV__ENST00000461023.5_1_16:338124-339729:-|nuORF	MSMS	HCT116MG_D190212_S3	3	524.7645263671875	2	524.764166	1047.51378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.486	1	24.403	23.903	24.903	-0.083694								0	0	0	0.56943	1	8698	8698		25.399	3.6527	1		+		2014	15778	959	974	2028	2028					-0.008076968710156507
AEPQWHLAP	9	Unmodified	_AEPQWHLAP_					0	0	0			REV__ENST00000461023.5_1_16:338124-339729:-|nuORF	REV__ENST00000461023.5_1_16:338124-339729:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	524.7645263671875	2	524.764166	1047.51378	0.29932	0.00015707	0.38321	0.0002011	0.68253	0.00035817	524.764169787583	24.399	0.26025	24.315	24.237	24.497	-0.083694					5	4	2	0	0	0	0.2025	1	8698	8698		25.399	11.493	1	2998200	+		2015	15778	959	974	2029	2029					-0.008076968710156507
AEPREPQQ	8	Unmodified	_AEPREPQQ_					0	0	0		FMN2|p.P1120Lfs*155|1|0.12|ENSG00000155816|chr1:240208167-240208167|C/-|frameshift_variant;FMN2|p.P1098Lfs*177|1|0.41|ENSG00000155816|chr1:240208101-240208101|C/-|frameshift_variant;ENSG00000155816|ENST00000319653|FMN2	FMN2|p.P1120Lfs*155|1|0.12|ENSG00000155816|chr1:240208167-240208167|C/-|frameshift_variant	FMN2|p.P1120Lfs*155|1|0.12|ENSG00000155816|chr1:240208167-240208167|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	477.7345275878906	2	477.735606	953.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.515	1	20.136	19.636	20.636	-0.37949								0	0	0	0.44863	1	7173	7173		46.021	8.047	1				2016	4263	960	975	2030	2030					-0.021931641473884156
AEPRPIRRRKL	11	Unmodified	_AEPRPIRRRKL_					0	0	0			REV__ENST00000468284.1_2_13:53029649-53035208:+|nuORF	REV__ENST00000468284.1_2_13:53029649-53035208:+|nuORF	MSMS	HCT116MG_D190212_S3	3	696.437744140625	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.454	1	43.148	42.648	43.648	-0.30577								0	0	0	0.95954	1	16215	16215		1.3295	0.36726	1		+		2017	15844	961	976	2031	2031					0.1835372313919379
AEPSFPFQVA	10	Unmodified	_AEPSFPFQVA_					0	0	0		CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant;CEP295|p.F1469Yfs*47|1|0.31|ENSG00000166004|chr11:93699317-93699318|-/ATCCAGCC|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.329833984375	2	546.771657	1091.52876	0.49324	0.00026969	-0.16802	-9.1871E-05	0.32521	0.00017782	546.7712046491428	55.592	0.25838	55.406	55.225	55.483	-0.18565					6	4	2	0	0	0	0.2945	1	21399	21399		16.149	6.8017	1	7261000			2018	408	962	977	2032	2032					-0.013342497936491782
AEPSFQDDD	9	Unmodified	_AEPSFQDDD_					0	0	0			REV__ENSG00000121057|ENST00000337714|AKAP1	REV__ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	512.1990356445312	2	512.198719	1022.38288	0.34251	0.00017543	-0.17224	-8.8223E-05	0.17027	8.7212E-05	512.1985649539986	25.842	0.31153	25.473	25.343	25.654	-0.36914					7	5	2	0	0	0	0.53593	1	9364	9364		14.838	0	1	8056000	+		2019	11705	963	978	2033	2033					-0.1274117710037217
AEPVPGPHLA	10	Unmodified	_AEPVPGPHLA_					0	0	0			REV__ENST00000380358.8_2_17:7814903-7815650:+|nuORF	REV__ENST00000380358.8_2_17:7814903-7815650:+|nuORF	MSMS	HCT116MG_D190212_S4	4	494.2686462402344	2	494.266542	986.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.476	1	36.09	35.59	36.59	-0.38558								0	0	0	0.85468	1	13350	13350		21.747	4.8044	1		+		2020	15269	964	979	2034	2034					0.02473187271743882
AEPVRSASPAR	11	Unmodified	_AEPVRSASPAR_					0	0	0		PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	380.8754577636719	3	380.875516	1139.60472	-0.08636	-3.2892E-05	-0.10583	-4.0306E-05	-0.19219	-7.3199E-05	380.87548919476706	15.553	0.20838	15.638	15.508	15.717	0.085423					5	3	2	0	0	0	0.73156	1	5128	5128		5.5233	0	1	2624700			2021	9750	965	980	2035	2035					0.04050147106477198
AEPVRSASPAR	11	Unmodified	_AEPVRSASPAR_					0	0	0		PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	380.875516	1139.60472	-0.08636	-3.2892E-05	-0.10583	-4.0306E-05	-0.19219	-7.3199E-05	380.87548919476706	15.553	0.20838	15.638	15.508	15.717	0.085423	0.075622	-8.6933E-06	NaN	5.5233	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2624700			2022	9750	965	980							0.04050147106477198
AEPVRSASPAR	11	Unmodified	_AEPVRSASPAR_					0	0	0		PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		3	380.875516	1139.60472	-0.59686	-0.00022733	-0.042845	-1.6319E-05	-0.6397	-0.00024365	381.2097322599749	15.649	0.15588	15.487	15.357	15.513	-0.16173	-0.075622	6.3269E-05	NaN	5.5233	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	823260			2023	9750	965	980							0.04050147106477198
AEQAAYLGR	9	Unmodified	_AEQAAYLGR_					0	0	0		ENST00000312838.8_1_16:88763521-88763863:-|nuORF	ENST00000312838.8_1_16:88763521-88763863:-|nuORF	ENST00000312838.8_1_16:88763521-88763863:-|nuORF	MSMS	HCT116MG_D190212_S3	3	489.7539367675781	2	489.753798	977.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.889	1	35.588	35.088	36.088	-0.30042								0	0	0	0.27468	1	13242	13242		41.956	2.0059	1				2024	7070	966	981	2036	2036					0.0033971274932582674
AEQAGAAALLP	11	Unmodified	_AEQAGAAALLP_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S3	3	506.2773742675781	2	506.277106	1010.53966	0.29499	0.00014935	0.4225	0.0002139	0.71749	0.00036325	506.27712116881906	48.196	0.31298	47.88	47.723	48.036	-0.31596					9	5	2	0	0	0	0.13274	1	18126	18126		83.429	35.68	1	3712600			2025	2861	967	982	2037	2037					0.034811525806162535
AEQAGAAALLP	11	Unmodified	_AEQAGAAALLP_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MSMS	HCT116MG_D190212_S4	4	506.27764892578125	2	506.277106	1010.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.27	1	47.903	47.403	48.403	-0.36728								0	0	0	0.70177	1	17872	17872		38.615	18.161	1				2026	2861	967	982	2038	2038					0.034811525806162535
AEQAGCMVSA	10	Carbamidomethyl (C)	_AEQAGC(Carbamidomethyl (C))MVSA_	AEQAGC(1)MVSA		AEQAGC(40)MVSA		0	1	0		nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2153930664062	2	512.215334	1022.41612	0.049452	2.533E-05	-0.19191	-9.8301E-05	-0.14246	-7.2971E-05	512.2153416283539	28.148	0.31337	27.942	27.811	28.125	-0.20593					10	5	2	0	0	0	0.42802	1	10202	10202		40.239	25.401	1	8282900			2027	4290	968	983	2039	2039	23				-0.09419589853666821
AEQAKQLVS	9	Unmodified	_AEQAKQLVS_					0	0	0		ENST00000520536.1_1_8:22475798-22477192:+|nuORF;nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2;ENST00000521436.5_1_8:22474947-22476312:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	MSMS	HCT116MG_D190212_S4	4	487.7487487792969	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.809	1	22.571	22.071	23.071	-0.23758								0	0	0	0.62613	1	7955	7955		22.658	0.91144	1				2028	4391	969	984	2040	2040					0.03664866063559202
AEQAKVVLA	9	Unmodified	_AEQAKVVLA_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	HCT116MG_D190212_S1	1	464.7767028808594	2	464.776742	927.538931	0.24125	0.00011213	0.12663	5.8854E-05	0.36788	0.00017098	464.77665889445154	29.607	0.2601	29.607	29.477	29.737	0					7	4	2	0	0	0	0.030039	1	10836	10836		86.332	24.974	1	20821000			2029	2308	970	985	2041	2041					0.07226357931551775
AEQAKVVLA	9	Unmodified	_AEQAKVVLA_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	HCT116MG_D190212_S2	2	928.5462036132812	1	928.546208	927.538931	0.64833	0.000602	-0.35668	-0.0003312	0.29164	0.00027081	928.5454964150907	30.259	0.25747	29.974	29.822	30.079	-0.28453					6	4	2	0	0	0	0.0055242	1	11132	11132		133.05	54.324	1	26182000			2030	2308	970	985	2042	2042					0.07226357931551775
AEQAKVVLA	9	Unmodified	_AEQAKVVLA_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MSMS	HCT116MG_D190212_S2	2	464.7762756347656	2	464.776742	927.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.271	1	29.986	29.486	30.486	-0.28453								0	0	0	0.031974	1	11122	11122		80.676	32.927	1				2031	2308	970	985	2043	2043					0.07226357931551775
AEQAKVVLA	9	Unmodified	_AEQAKVVLA_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	HCT116MG_D190212_S3	3	464.77679443359375	2	464.776742	927.538931	0.34346	0.00015963	0.025353	1.1783E-05	0.36881	0.00017141	464.7765742381507	30.246	0.39119	29.996	29.755	30.147	-0.24946					16	8	3	0	0	0	0.037825	1	11018	11018		80.676	24.499	1	66719000			2032	2308	970	985	2044	2044					0.07226357931551775
AEQAKVVLA	9	Unmodified	_AEQAKVVLA_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	HCT116MG_D190212_S3	3	928.5465087890625	1	928.546208	927.538931	0.95958	0.00089101	-0.20597	-0.00019126	0.7536	0.00069976	928.545815399177	30.276	0.2504	30.026	29.861	30.112	-0.24946					7	4	2	0	0	0	0.0035183	1	11021	11021		157.8	79.067	1	16408000			2033	2308	970	985	2045	2045					0.07226357931551775
AEQAKVVLA	9	Unmodified	_AEQAKVVLA_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	HCT116MG_D190212_S4	4	464.77679443359375	2	464.776742	927.538931	-0.058441	-2.7162E-05	-0.049129	-2.2834E-05	-0.10757	-4.9996E-05	464.7766965128179	30.5	0.27187	30.136	29.996	30.268	-0.36416					44	27	2	0	0	0	0.064006	1	11020	11020		67.838	23.98	1	34503000			2034	2308	970	985	2046	2046					0.07226357931551775
AEQATTVKA	9	Unmodified	_AEQATTVKA_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3;nc|ENSG00000167595|Q2NL68|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MSMS	HCT116MG_D190212_S2	2	459.74847412109375	2	459.748182	917.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.841	1	18.477	17.977	18.977	-0.36325								0	0	0	0.17014	1	6499	6499		49.527	13.021	1				2035	4935	971	986	2047	2047					0.019768906551689724
AEQATTVKA	9	Unmodified	_AEQATTVKA_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3;nc|ENSG00000167595|Q2NL68|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MULTI-SECPEP	HCT116MG_D190212_S2	2	459.2322998046875	2	459.748182	917.481811	-0.20409	-9.3831E-05	0.64096	0.00029468	0.43687	0.00020085	459.7484088679952	18.762	0.20775	18.399	18.269	18.477	-0.36325					5	3	2	0	0	0	0.066778	1	6476	6476		55.235	22.929	1	8079700			2036	4935	971	986	2048	2048					0.019768906551689724
AEQATTVKA	9	Unmodified	_AEQATTVKA_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3;nc|ENSG00000167595|Q2NL68|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	HCT116MG_D190212_S3	3	459.7481689453125	2	459.748182	917.481811	0.21131	9.715E-05	0.25601	0.0001177	0.46732	0.00021485	459.7480207339079	17.843	0.20825	17.924	17.846	18.054	0.081358					5	3	2	0	0	0	0.19011	1	6047	6047		42.312	2.0733	1	3591700			2037	4935	971	986	2049	2049					0.019768906551689724
AEQAVSRSA	9	Unmodified	_AEQAVSRSA_					0	0	0		nc|ENSG00000152229|Q9H939-2|PSTPIP2;ENSG00000152229|ENST00000409746|PSTPIP2	nc|ENSG00000152229|Q9H939-2|PSTPIP2	nc|ENSG00000152229|Q9H939-2|PSTPIP2	MULTI-MSMS	HCT116MG_D190212_S2	2	459.73565673828125	2	459.735606	917.456658	0.060985	2.8037E-05	0.25309	0.00011636	0.31408	0.00014439	459.7356371941894	15.893	0.26095	15.559	15.428	15.689	-0.33451					9	4	3	0	0	0	0.26707	1	5335	5335		34.222	7.3381	1	8512500			2038	4140	972	987	2050	2050					-0.00537164147385738
AEQCRKISA	9	Carbamidomethyl (C)	_AEQC(Carbamidomethyl (C))RKISA_	AEQC(1)RKISA		AEQC(50)RKISA		0	1	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MSMS	HCT116MG_D190212_S1	1	531.7720947265625	2	531.771665	1061.52878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.92	1	16.92	16.42	17.42	0								0	0	0	0.16718	1	5726	5726		49.742	27.995	1				2039	5347	973	988	2051	2051	30				0.0004742693467960635
AEQCRKISA	9	Carbamidomethyl (C)	_AEQC(Carbamidomethyl (C))RKISA_	AEQC(1)RKISA		AEQC(120)RKISA		0	1	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7718505859375	2	531.771665	1061.52878	0.4543	0.00024158	0.19452	0.00010344	0.64882	0.00034503	531.7715964354521	17.458	0.31353	17.108	16.978	17.291	-0.34933					11	5	3	0	0	0	0.0080275	1	5946	5946		118.21	68.276	1	49400000			2040	5347	973	988	2052	2052	30				0.0004742693467960635
AEQDLIREL	9	Unmodified	_AEQDLIREL_					0	0	0		ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENSG00000125124|ENST00000245157|BBS2	ENST00000561853.1_1_16:56536201-56536626:-|nuORF	ENST00000561853.1_1_16:56536201-56536626:-|nuORF	MSMS	HCT116MG_D190212_S1	1	543.79296875	2	543.793121	1085.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.6	1	46.6	46.1	47.1	0								0	0	0	0.01783	1	17685	17685		94.909	20.709	1				2041	257	974	989	2053	2053					0.032325202637593975
AEQDLIREL	9	Unmodified	_AEQDLIREL_					0	0	0		ENST00000561853.1_1_16:56536201-56536626:-|nuORF;ENST00000565781.5_1_16:56536201-56536402:-|nuORF;ENST00000561951.5_1_16:56535647-56545169:-|nuORF;BBS2|p.F575Lfs*8|1|0.19|ENSG00000125124|chr16:56497815-56497815|A/-|frameshift_variant;ENSG00000125124|ENST00000245157|BBS2	ENST00000561853.1_1_16:56536201-56536626:-|nuORF	ENST00000561853.1_1_16:56536201-56536626:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	543.7933349609375	2	543.793121	1085.57169	0.56119	0.00030517	0.089838	4.8853E-05	0.65103	0.00035402	543.7929935941569	46.778	0.3127	46.464	46.281	46.594	-0.31405					9	5	2	0	0	0	0.030601	1	17574	17574		85.764	15.432	1	10680000			2042	257	974	989	2054	2054					0.032325202637593975
AEQDPDELNKA	11	Unmodified	_AEQDPDELNKA_					0	0	0		ENSG00000146707|ENST00000310842|POMZP3;nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	ENSG00000146707|ENST00000310842|POMZP3	ENSG00000146707|ENST00000310842|POMZP3	MULTI-MSMS	HCT116MG_D190212_S1	1	615.2860107421875	2	615.285857	1228.55716	0.45934	0.00028262	-0.4696	-0.00028894	-0.010266	-6.3163E-06	615.2856009276488	23.132	0.26022	23.132	22.949	23.21	0					7	4	2	0	0	0	0.035922	1	8226	8226		142.94	95.346	1	19117000			2043	3957	975	990	2055	2055					-0.04797596675030036
AEQDPDELNKA	11	Unmodified	_AEQDPDELNKA_					0	0	0		ENSG00000146707|ENST00000310842|POMZP3;nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	ENSG00000146707|ENST00000310842|POMZP3	ENSG00000146707|ENST00000310842|POMZP3	MULTI-MSMS	HCT116MG_D190212_S2	2	615.2860107421875	2	615.285857	1228.55716	0.32554	0.0002003	-0.043765	-2.6928E-05	0.28178	0.00017337	615.2858536164291	23.5	0.46766	23.117	22.988	23.456	-0.38324					14	8	2	0	0	0	0.1462	1	8400	8400		96.034	64.766	1	142730000			2044	3957	975	990	2056	2056					-0.04797596675030036
AEQDPDELNKA	11	Unmodified	_AEQDPDELNKA_					0	0	0		ENSG00000146707|ENST00000310842|POMZP3;nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	ENSG00000146707|ENST00000310842|POMZP3	ENSG00000146707|ENST00000310842|POMZP3	MULTI-MSMS	HCT116MG_D190212_S3	3	615.2861328125	2	615.285857	1228.55716	0.34493	0.00021223	0.66181	0.0004072	1.0067	0.00061944	615.2857398977656	23.149	1.1855	23.109	22.47	23.656	-0.03968					39	22	3	0	0	0	0.0045065	2	8159	8146;8159		176.41	120.23	1	144730000			2045	3957	975	990	2057;2058	2058					-0.04797596675030036
AEQDPDELNKA	11	Unmodified	_AEQDPDELNKA_					0	0	0		ENSG00000146707|ENST00000310842|POMZP3;nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	ENSG00000146707|ENST00000310842|POMZP3	ENSG00000146707|ENST00000310842|POMZP3	MULTI-MSMS	HCT116MG_D190212_S4	4	615.2859497070312	2	615.285857	1228.55716	0.50815	0.00031265	0.72504	0.00044611	1.2332	0.00075876	615.2855890184106	23.389	0.9927	23.142	22.435	23.428	-0.24775					35	18	3	0	0	0	1.5157E-05	2	8187	8174;8187		213.63	155.91	1	67688000			2046	3957	975	990	2059;2060	2060					-0.04797596675030036
AEQDPEARAA	10	Unmodified	_AEQDPEARAA_					0	0	0		NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant;nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000462059.1_1_8:144660029-144660488:-|nuORF	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2493286132812	2	529.249077	1056.4836	0.4412	0.00023351	0.099182	5.2492E-05	0.54039	0.000286	529.2490954193263	17.353	0.47024	17.004	16.873	17.343	-0.34933					16	8	3	0	0	0	0.011898	1	5909	5909		139.38	71.54	1	25766000			2047	4001	976	991	2061	2061					-0.042381003268701534
AEQDPEARAA	10	Unmodified	_AEQDPEARAA_					0	0	0		NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant;nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000462059.1_1_8:144660029-144660488:-|nuORF	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2493286132812	2	529.249077	1056.4836	0.34228	0.00018115	0.13221	6.9974E-05	0.47449	0.00025113	529.2490835778278	16.49	0.52019	16.575	16.393	16.913	0.085424					24	9	4	0	0	0	0.0090819	1	5476	5476		154.04	77.212	1	22590000			2048	4001	976	991	2062	2062					-0.042381003268701534
AEQDSWYQA	9	Unmodified	_AEQDSWYQA_					0	0	0		ENSG00000169047|ENST00000305123|IRS1;IRS1|p.L110F|1|0.07|ENSG00000169047|chr2:226798411-226798411|G/A|missense_variant;IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant;IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant	ENSG00000169047|ENST00000305123|IRS1;IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant	ENSG00000169047|ENST00000305123|IRS1	MULTI-MSMS	HCT116MG_D190212_S3	3	549.2304077148438	2	549.230353	1096.44615	0.374	0.00020541	-0.22128	-0.00012153	0.15272	8.3877E-05	549.2303057397099	39.004	0.36363	38.703	38.508	38.872	-0.30137					15	6	3	0	0	0	0.10244	1	14474	14474		57.722	21.595	1	10244000			2049	5047;9246	977	992	2063	2063					-0.098211915924594
AEQDSWYQA	9	Unmodified	_AEQDSWYQA_					0	0	0		ENSG00000169047|ENST00000305123|IRS1;IRS1|p.L110F|1|0.07|ENSG00000169047|chr2:226798411-226798411|G/A|missense_variant;IRS1|p.H598Tfs*38|3|0.31|ENSG00000169047|chr2:226796948-226796948|C/-|frameshift_variant;IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant	ENSG00000169047|ENST00000305123|IRS1;IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant	ENSG00000169047|ENST00000305123|IRS1	MULTI-MSMS	HCT116MG_D190212_S4	4	549.2304077148438	2	549.230353	1096.44615	0.55404	0.00030429	-0.029044	-1.5952E-05	0.52499	0.00028834	549.230134274556	39.106	0.2928	38.725	38.592	38.884	-0.38055					10	6	2	0	0	0	0.14362	1	14379	14379		49.554	20.473	1	3499800			2050	5047;9246	977	992	2064	2064					-0.098211915924594
AEQEALQAK	9	Unmodified	_AEQEALQAK_					0	0	0		ENSG00000159197|ENST00000290310|KCNE2	ENSG00000159197|ENST00000290310|KCNE2	ENSG00000159197|ENST00000290310|KCNE2	MSMS	HCT116MG_D190212_S2	2	494.259033203125	2	494.258914	986.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.454	1	24.074	23.574	24.574	-0.38003								0	0	0	0.14112	1	8763	8763		51.63	3.8811	1				2051	4401	978	993	2065	2065					0.009482756838906425
AEQEALQAK	9	Unmodified	_AEQEALQAK_					0	0	0		ENSG00000159197|ENST00000290310|KCNE2	ENSG00000159197|ENST00000290310|KCNE2	ENSG00000159197|ENST00000290310|KCNE2	MULTI-MSMS	HCT116MG_D190212_S3	3	494.25872802734375	2	494.258914	986.503274	0.13525	6.6849E-05	0.70618	0.00034904	0.84143	0.00041589	494.2590657768785	24.002	0.26062	23.941	23.791	24.051	-0.061447					6	4	2	0	0	0	0.037825	1	8523	8523		80.676	12.595	1	4398200			2052	4401	978	993	2066	2066					0.009482756838906425
AEQEDGRAV	9	Unmodified	_AEQEDGRAV_					0	0	0		ENST00000341181.10_2_3:98240279-98241721:-|nuORF	ENST00000341181.10_2_3:98240279-98241721:-|nuORF	ENST00000341181.10_2_3:98240279-98241721:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	487.7308349609375	2	487.73052	973.446488	0.45242	0.00022066	-0.012048	-5.876E-06	0.44037	0.00021478	487.7303627242221	17.228	0.26071	17.228	17.098	17.359	0					9	4	3	0	0	0	0.0050238	1	5852	5852		137.42	37.669	1	15277000			2053	7218	979	994	2067	2067					-0.04129771872612764
AEQEDGRAV	9	Unmodified	_AEQEDGRAV_					0	0	0		ENST00000341181.10_2_3:98240279-98241721:-|nuORF	ENST00000341181.10_2_3:98240279-98241721:-|nuORF	ENST00000341181.10_2_3:98240279-98241721:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	974.4541015625	1	974.453764	973.446488	0.65476	0.00063803	-0.0060031	-5.8497E-06	0.64876	0.00063218	974.4537128579925	17.662	0.26093	17.305	17.127	17.388	-0.35647					9	4	3	0	0	0	0.004234	1	6032	6032		147.24	33.039	1	14947000			2054	7218	979	994	2068	2068					-0.04129771872612764
AEQEDGRAV	9	Unmodified	_AEQEDGRAV_					0	0	0		ENST00000341181.10_2_3:98240279-98241721:-|nuORF	ENST00000341181.10_2_3:98240279-98241721:-|nuORF	ENST00000341181.10_2_3:98240279-98241721:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	487.7304992675781	2	487.73052	973.446488	0.024354	1.1878E-05	0.22497	0.00010973	0.24933	0.0001216	487.73058011221553	16.698	0.46829	16.782	16.6	17.068	0.084467					15	8	3	0	0	0	0.0082095	1	5561	5561		117.76	31.429	1	18181000			2055	7218	979	994	2069	2069					-0.04129771872612764
AEQEDGRAV	9	Unmodified	_AEQEDGRAV_					0	0	0		ENST00000341181.10_2_3:98240279-98241721:-|nuORF	ENST00000341181.10_2_3:98240279-98241721:-|nuORF	ENST00000341181.10_2_3:98240279-98241721:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	487.73052	973.446488	0.21237	0.00010358	0.043153	2.1047E-05	0.25552	0.00012462	487.73047056805405	17.667	0.46997	17.31	17.127	17.597	-0.35647	0.040782	1.1465E-05	NaN	137.42	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122480000			2056	7218	979	994							-0.04129771872612764
AEQEKFLTC	9	Unmodified	_AEQEKFLTC_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant;ITPR3|p.K608Sfs*66|1|0.34|ENSG00000096433|chr6:33667898-33667898|A/-|frameshift_variant;ITPR3|p.G531Vfs*50|1|0.15|ENSG00000096433|chr6:33667164-33667164|G/-|frameshift_variant;ITPR2|p.E255K|1|0.22|ENSG00000123104|chr12:26715391-26715391|C/T|missense_variant;ITPR1|p.E255K|1|0.22|ENSG00000150995|chr3:4645636-4645636|G/A|missense_variant;ITPR2|p.Q260Tfs*18|1|0.28|ENSG00000123104|chr12:26715376-26715377|-/T|frameshift_variant;ENST00000467056.5_1_3:4536161-4687445:+|nuORF;ITPR2|p.F471Lfs*2|1|0.21|ENSG00000123104|chr12:26666048-26666048|A/-|frameshift_variant;ITPR2|p.L479Ffs*33|1|0.04|ENSG00000123104|chr12:26666026-26666027|-/GGAACAAA|frameshift_variant;ITPR2|p.D636Afs*14|1|0.07|ENSG00000123104|chr12:26658110-26658111|-/AATGG|frameshift_variant;ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.7550048828125	2	534.755149	1067.49575	0.24877	0.00013303	-2.3237	-0.0012426	-2.075	-0.0011096	534.7551070945168	38.078	0.41335	37.985	37.753	38.167	-0.09301					11	7	2	0	0	0	0.13424	1	14306	14306		51.415	23.786	1	16326000			2057	1619;2789;4098	980	995	2070	2070					-0.03530199908027498
AEQEKFLTC	9	Unmodified	_AEQEKFLTC_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant;ITPR3|p.K608Sfs*66|1|0.34|ENSG00000096433|chr6:33667898-33667898|A/-|frameshift_variant;ITPR3|p.G531Vfs*50|1|0.15|ENSG00000096433|chr6:33667164-33667164|G/-|frameshift_variant;ITPR2|p.E255K|1|0.22|ENSG00000123104|chr12:26715391-26715391|C/T|missense_variant;ITPR1|p.E255K|1|0.22|ENSG00000150995|chr3:4645636-4645636|G/A|missense_variant;ITPR2|p.Q260Tfs*18|1|0.28|ENSG00000123104|chr12:26715376-26715377|-/T|frameshift_variant;ENST00000467056.5_1_3:4536161-4687445:+|nuORF;ITPR2|p.F471Lfs*2|1|0.21|ENSG00000123104|chr12:26666048-26666048|A/-|frameshift_variant;ITPR2|p.L479Ffs*33|1|0.04|ENSG00000123104|chr12:26666026-26666027|-/GGAACAAA|frameshift_variant;ITPR2|p.D636Afs*14|1|0.07|ENSG00000123104|chr12:26658110-26658111|-/AATGG|frameshift_variant;ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7554321289062	2	534.755149	1067.49575	0.47624	0.00025467	-2.5584	-0.0013681	-2.0821	-0.0011134	534.7551269481073	38.264	0.51831	37.963	37.729	38.248	-0.30137					15	9	3	0	0	0	0.11498	1	14171	14171		55.235	25.394	1	12901000			2058	1619;2789;4098	980	995	2071	2071					-0.03530199908027498
AEQEKGLP	8	Unmodified	_AEQEKGLP_					0	0	0		nc|ENSG00000072952|Q9Y6F6-6|IRAG1;nc|ENSG00000072952|Q9Y6F6-8|IRAG1;nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1	nc|ENSG00000072952|Q9Y6F6-6|IRAG1	nc|ENSG00000072952|Q9Y6F6-6|IRAG1	MSMS	HCT116MG_D190212_S3	3	436.22869873046875	2	436.229625	870.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.589	1	25.464	24.964	25.964	-0.1251								0	0	0	0.8837	1	9143	9143		8.5933	0.68312	1				2059	1279	981	996	2072	2072					0.004292191094350528
AEQEMQRIKA	10	Unmodified	_AEQEMQRIKA_					0	0	0		nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2	nc|ENSG00000186575|P35240-4|NF2	nc|ENSG00000186575|P35240-4|NF2	MULTI-MSMS	HCT116MG_D190212_S2	2	602.3118286132812	2	602.311155	1202.60776	0.94434	0.00056879	0.054635	3.2907E-05	0.99898	0.0006017	602.3111724329092	24.124	0.20705	23.744	23.615	23.822	-0.38003					6	3	2	0	0	0	0.09647	1	8657	8657		74.772	32.816	1	11336000			2060	5896	982	997	2073	2073					0.014556541689671576
AEQEMQRIKA	10	Unmodified	_AEQEMQRIKA_					0	0	0		nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2	nc|ENSG00000186575|P35240-4|NF2	nc|ENSG00000186575|P35240-4|NF2	MULTI-MSMS	HCT116MG_D190212_S3	3	602.3114624023438	2	602.311155	1202.60776	0.57807	0.00034818	0.053964	3.2503E-05	0.63204	0.00038068	602.3114887415919	23.572	0.31264	23.532	23.343	23.656	-0.03968					10	5	3	0	0	0	0.26668	1	8351	8351		53.47	18.537	1	6495200			2061	5896	982	997	2074	2074					0.014556541689671576
AEQEMQRIKA	10	Unmodified	_AEQEMQRIKA_					0	0	0		nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2	nc|ENSG00000186575|P35240-4|NF2	nc|ENSG00000186575|P35240-4|NF2	MSMS	HCT116MG_D190212_S3	3	401.87664794921875	3	401.876529	1202.60776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.632	1	23.593	23.093	24.093	-0.03968								0	0	0	0.85631	1	8353	8353		23.801	18.278	1				2062	5896	982	997	2075	2075					0.014556541689671576
AEQEMQRIKA	10	Unmodified	_AEQEMQRIKA_					0	0	0		nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2	nc|ENSG00000186575|P35240-4|NF2	nc|ENSG00000186575|P35240-4|NF2	MSMS	HCT116MG_D190212_S4	4	602.3123779296875	2	602.311155	1202.60776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.971	1	23.713	23.213	24.213	-0.25816								0	0	0	0.80437	1	8421	8421		28.234	12.985	1				2063	5896	982	997	2076	2076					0.014556541689671576
AEQEPTAEQLA	11	Unmodified	_AEQEPTAEQLA_					0	0	0		nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	MULTI-MSMS	HCT116MG_D190212_S3	3	593.782958984375	2	593.78295	1185.55135	0.54949	0.00032628	0.61547	0.00036546	1.165	0.00069173	593.7826996059559	31.743	0.46929	31.472	31.117	31.586	-0.27028					10	8	2	0	0	0	0.50128	1	11635	11635		46.022	25.608	1	3302100			2064	3726	983	998	2077	2077					-0.03400695186701341
AEQEPTAEQLA	11	Unmodified	_AEQEPTAEQLA_					0	0	0		nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	593.78295	1185.55135	0.78379	0.0004654	0.46066	0.00027353	1.2444	0.00073893	593.7827208839311	31.783	0.2076	31.408	31.33	31.538	-0.37529	-0.032135	-8.6156E-05	NaN	46.022	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2663800			2065	3726	983	998							-0.03400695186701341
AEQEREDRQA	10	Unmodified	_AEQEREDRQA_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	HCT116MG_D190212_S2	2	616.7866821289062	2	616.286722	1230.55889	0.33741	0.00020794	3.8748	0.002388	4.2122	0.0025959	616.2908634755177	23.517	0.62351	23.133	22.624	23.247	-0.38324					18	11	3	0	0	0	0.33085	1	8394	8394		47.732	11.605	1	26326000			2066	5809	984	999	2078	2078					-0.04716542866435702
AEQERNEFV	9	Unmodified	_AEQERNEFV_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-SECPEP	HCT116MG_D190212_S2	2	561.2656860351562	2	561.264727	1120.5149	0.39718	0.00022292	0.26362	0.00014796	0.6608	0.00037088	561.2649981291416	31.016	0.30995	30.749	30.612	30.922	-0.26704					11	5	3	0	0	0	0.17064	1	11479	11479		45.74	34.94	1	25703000			2067	5573	985	1000	2079	2079					-0.040535272927627375
AEQERNEFV	9	Unmodified	_AEQERNEFV_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	HCT116MG_D190212_S3	3	561.2649536132812	2	561.264727	1120.5149	0.29977	0.00016825	0.25091	0.00014083	0.55068	0.00030908	561.2649389841378	31.165	0.36548	30.905	30.709	31.074	-0.26071					13	6	3	0	0	0	0.019537	1	11371	11371		96.936	64.15	1	10986000			2068	5573	985	1000	2080	2080					-0.040535272927627375
AEQERNEFV	9	Unmodified	_AEQERNEFV_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-MSMS	HCT116MG_D190212_S4	4	561.2650756835938	2	561.264727	1120.5149	0.12788	7.1775E-05	0.082856	4.6504E-05	0.21074	0.00011828	561.2650400897896	31.316	0.41455	30.945	30.765	31.179	-0.37026					10	7	2	0	0	0	0.060947	1	11367	11367		69.338	69.338	1	4437500			2069	5573	985	1000	2081	2081					-0.040535272927627375
AEQERVLCSI	10	Unmodified	_AEQERVLCSI_					0	0	0			REV__ENSG00000133265|ENST00000433386|HSPBP1	REV__ENSG00000133265|ENST00000433386|HSPBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	383.197265625	3	383.197379	1146.57031	-0.1556	-5.9626E-05	-0.16136	-6.1833E-05	-0.31696	-0.00012146	383.1972878084149	25.496	0.2614	25.127	24.978	25.239	-0.36914					12	4	3	0	0	0	0.77749	1	9198	9198		8.4443	8.4443	1	21307000	+		2070	12025	986	1001	2082	2082					0.0028856290334715595
AEQESARQL	9	Unmodified	_AEQESARQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2592163085938	2	516.259445	1030.50434	0.24837	0.00012822	0.84489	0.00043618	1.0933	0.00056441	516.2599412933974	22.098	0.41697	21.713	21.427	21.844	-0.38503					13	7	3	0	0	0	0.0041644	1	7825	7825		148.27	58.867	1	24751000			2071	5492	987	1002	2083	2083					-0.009695099471855428
AEQESARQL	9	Unmodified	_AEQESARQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	516.259521484375	2	516.259445	1030.50434	0.17322	8.9424E-05	0.59693	0.00030817	0.77015	0.0003976	516.259200829451	21.432	0.37063	21.451	21.271	21.641	0.018448					15	6	4	0	0	0	0.051033	1	7495	7495		74.2	5.0947	1	10371000			2072	5492	987	1002	2084	2084					-0.009695099471855428
AEQESKLNEA	10	Unmodified	_AEQESKLNEA_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	HCT116MG_D190212_S2	2	559.7691650390625	2	559.769842	1117.52513	0.38572	0.00021591	-0.073253	-4.1005E-05	0.31247	0.00017491	559.7692129078536	19.7	0.26015	19.324	19.194	19.455	-0.37503					9	4	3	0	0	0	0.36867	1	6873	6873		44.392	4.4422	1	10709000			2073	2979	988	1003	2085	2085					-0.028929643581932396
AEQESKLNEA	10	Unmodified	_AEQESKLNEA_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MSMS	HCT116MG_D190212_S3	3	559.7703247070312	2	559.769842	1117.52513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.998	1	19.067	18.567	19.567	0.069159								0	0	0	0.73996	1	6487	6487		35.612	1.2105	1				2074	2979	988	1003	2086	2086					-0.028929643581932396
AEQESQMRA	9	Unmodified	_AEQESQMRA_					0	0	0		ENST00000487869.1_1_21:40752343-40763801:+|nuORF;nc|ENSG00000182093|O00258-2|GET1;ENSG00000182093|ENST00000649170|GET1	ENST00000487869.1_1_21:40752343-40763801:+|nuORF	ENST00000487869.1_1_21:40752343-40763801:+|nuORF	MSMS	HCT116MG_D190212_S2	2	525.2379760742188	2	525.237655	1048.46076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.196	1	18.827	18.327	19.327	-0.3695								0	0	0	0.021869	1	6642	6642		90.135	32.413	1				2075	5652	989	1004	2087	2087					-0.0615344271595859
AEQESQMRA	9	Unmodified	_AEQESQMRA_					0	0	0		ENST00000487869.1_1_21:40752343-40763801:+|nuORF;nc|ENSG00000182093|O00258-2|GET1;ENSG00000182093|ENST00000649170|GET1	ENST00000487869.1_1_21:40752343-40763801:+|nuORF	ENST00000487869.1_1_21:40752343-40763801:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2379150390625	2	525.237655	1048.46076	0.35241	0.0001851	-0.032497	-1.7069E-05	0.31991	0.00016803	525.2378172193544	18.294	0.26073	18.37	18.257	18.518	0.076336					8	4	3	0	0	0	0.0055242	1	6216	6216		133.05	47.411	1	6711800			2076	5652	989	1004	2088	2088					-0.0615344271595859
AEQESQMRA	9	Unmodified	_AEQESQMRA_					0	0	0		ENST00000487869.1_1_21:40752343-40763801:+|nuORF;nc|ENSG00000182093|O00258-2|GET1;ENSG00000182093|ENST00000649170|GET1	ENST00000487869.1_1_21:40752343-40763801:+|nuORF	ENST00000487869.1_1_21:40752343-40763801:+|nuORF	MSMS	HCT116MG_D190212_S4	4	525.2379150390625	2	525.237655	1048.46076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.65	1	18.469	17.969	18.969	-0.18052								0	0	0	0.41664	1	6274	6274		32.786	5.1569	1				2077	5652	989	1004	2089	2089					-0.0615344271595859
AEQFAITEA	9	Unmodified	_AEQFAITEA_					0	0	0		ENST00000447882.1_1_1:16361675-16363149:-|nuORF;ENSG00000185519|ENST00000375662|FAM131C	ENST00000447882.1_1_1:16361675-16363149:-|nuORF	ENST00000447882.1_1_1:16361675-16363149:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	979.4734497070312	1	979.473103	978.465826	0.5923	0.00058014	0.09911	9.7076E-05	0.69141	0.00067722	979.4731028654662	42.389	0.77119	42.013	41.482	42.254	-0.37565					25	14	3	0	0	0	0.31596	1	15441	15441		29.082	5.9332	1	5754300			2078	5833	990	1005	2090	2090					-0.024268155817367187
AEQFDLEP	8	Unmodified	_AEQFDLEP_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-MSMS	HCT116MG_D190212_S4	4	475.22161865234375	2	474.71909	947.423627	0.2269	0.00010771	-2.2356	-0.0010613	-2.0087	-0.00095356	474.71718916565015	17.983	0.83125	17.808	17.22	18.051	-0.17501					23	15	2	0	0	0	0.77285	1	5963	5963		14.582	0.67564	1	1637600	+		2079	17170	991	1006	2091	2091					-0.05218790990090838
AEQFKFHMP	9	Unmodified	_AEQFKFHMP_					0	0	0		ENST00000437036.6_1_17:57189640-57232487:-|nuORF;ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF;ENST00000580541.1_1_17:57189640-57232487:-|nuORF	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	567.77392578125	2	567.773677	1133.5328	0.435	0.00024698	-0.37819	-0.00021473	0.056807	3.2253E-05	567.7733626909805	43.95	0.35983	43.872	43.659	44.019	-0.078369					9	6	2	0	0	0	0.16306	1	16721	16721		45.7	26.261	1	17987000			2080	5680	992	1007	2092	2092					-0.028624835716072994
AEQFKLIQA	9	Unmodified	_AEQFKLIQA_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	HCT116MG_D190212_S2	2	524.2952270507812	2	524.295299	1046.57605	-0.12601	-6.6067E-05	0.35456	0.0001859	0.22855	0.00011983	524.2954674164171	43.254	0.46415	43.18	42.943	43.407	-0.073376					13	8	3	0	0	0	0.011132	1	16405	16405		110.55	42.472	1	46149000			2081	5026	993	1008	2093	2093					0.05462029477325814
AEQFKLIQA	9	Unmodified	_AEQFKLIQA_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	HCT116MG_D190212_S3	3	524.2948608398438	2	524.295299	1046.57605	0.41598	0.0002181	-0.33455	-0.0001754	0.08143	4.2694E-05	524.2950405915657	43.496	0.3643	43.19	43.032	43.396	-0.30616					16	6	4	0	0	0	0.0064416	1	16228	16228		125.04	61.077	1	47882000			2082	5026	993	1008	2094	2094					0.05462029477325814
AEQFKLIQA	9	Unmodified	_AEQFKLIQA_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	HCT116MG_D190212_S4	4	524.2953491210938	2	524.295299	1046.57605	0.35035	0.00018368	0.035781	1.876E-05	0.38613	0.00020244	524.29532805158	43.615	0.39068	43.241	43.076	43.467	-0.37433					15	7	3	0	0	0	0.01386	1	16023	16023		103.82	30.856	1	23681000			2083	5026	993	1008	2095	2095					0.05462029477325814
AEQFSSLTP	9	Unmodified	_AEQFSSLTP_					0	0	0		ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	979.4729614257812	1	979.473103	978.465826	0.69359	0.00067935	-0.066482	-6.5117E-05	0.62711	0.00061423	979.4726073353324	42.091	0.51798	42.023	41.705	42.223	-0.068199					14	9	2	0	0	0	0.053544	1	15941	15941		72.968	10.395	1	17406000			2084	7371	994	1009	2096	2096					-0.024268155817139814
AEQFSSLTP	9	Unmodified	_AEQFSSLTP_					0	0	0		ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	490.240478515625	2	490.24019	978.465826	0.25652	0.00012576	-0.54269	-0.00026605	-0.28617	-0.00014029	490.24003342799756	42.068	0.51798	42	41.705	42.223	-0.068199					19	9	3	0	0	0	0.11363	1	15964	15964		55.503	9.8031	1	15389000			2085	7371	994	1009	2097	2097					-0.024268155817139814
AEQFSSLTP	9	Unmodified	_AEQFSSLTP_					0	0	0		ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	979.4728393554688	1	979.473103	978.465826	0.77088	0.00075506	0.21502	0.0002106	0.9859	0.00096566	979.4729775122801	42.317	0.78137	42.013	41.519	42.301	-0.30352					27	14	3	0	0	0	0.053544	1	15711	15711		72.968	10.395	1	13334000			2086	7371	994	1009	2098	2098					-0.024268155817139814
AEQFSSLTP	9	Unmodified	_AEQFSSLTP_					0	0	0		ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	490.2404479980469	2	490.24019	978.465826	0.17192	8.4281E-05	0.19977	9.7935E-05	0.37169	0.00018222	490.2402578418454	42.374	0.82151	42.071	41.479	42.301	-0.30352					28	15	3	0	0	0	0.11363	1	15722	15722		55.503	9.8031	1	13272000			2087	7371	994	1009	2099	2099					-0.024268155817139814
AEQFSSLTP	9	Unmodified	_AEQFSSLTP_					0	0	0		ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	ENST00000366535.3_1_1:244615028-244615205:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	978.988037109375	1	979.473103	978.465826	0.5923	0.00058014	0.09911	9.7076E-05	0.69141	0.00067722	979.4731028654662	42.389	0.77119	42.013	41.482	42.254	-0.37565					25	14	3	0	0	0	0.11363	2	15473	15473;15674		55.503	9.8031	1	5754300			2088	7371	994	1009	2100;2101	2100					-0.024268155817139814
AEQGHLPPP	9	Unmodified	_AEQGHLPPP_					0	0	0		ENST00000589167.1_1_18:55998140-56002796:+|nuORF;nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L	ENST00000589167.1_1_18:55998140-56002796:+|nuORF	ENST00000589167.1_1_18:55998140-56002796:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2431640625	2	473.243067	944.47158	0.29012	0.0001373	0.049964	2.3645E-05	0.34008	0.00016094	473.2430395300727	24.987	1.2996	24.611	24.244	25.544	-0.37521					33	24	2	0	0	0	0.069315	1	8985	8985		65.235	10.461	1	12783000			2089	1045	995	1010	2102	2102					-0.0028767227937578355
AEQGHLPPP	9	Unmodified	_AEQGHLPPP_					0	0	0		ENST00000589167.1_1_18:55998140-56002796:+|nuORF;nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L	ENST00000589167.1_1_18:55998140-56002796:+|nuORF	ENST00000589167.1_1_18:55998140-56002796:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	473.24298095703125	2	473.243067	944.47158	0.22918	0.00010846	-0.063595	-3.0096E-05	0.16559	7.8362E-05	473.2429330234645	24.67	1.5093	24.587	24.081	25.59	-0.083694					58	28	3	0	0	0	0.11023	1	8670	8670		56.177	10.156	1	8372800			2090	1045	995	1010	2103	2103					-0.0028767227937578355
AEQGHLPPP	9	Unmodified	_AEQGHLPPP_					0	0	0		ENST00000589167.1_1_18:55998140-56002796:+|nuORF;nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L	ENST00000589167.1_1_18:55998140-56002796:+|nuORF	ENST00000589167.1_1_18:55998140-56002796:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2434387207031	2	473.243067	944.47158	0.49414	0.00023385	-0.30297	-0.00014338	0.19117	9.0471E-05	473.24285589852406	24.863	1.2474	24.594	24.238	25.485	-0.26881					37	23	2	0	0	0	0.12994	1	8716	8716		52.268	18.166	1	6178300			2091	1045	995	1010	2104	2104					-0.0028767227937578355
AEQGPAATA	9	Unmodified	_AEQGPAATA_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MSMS	HCT116MG_D190212_S2	2	815.3908081054688	1	815.389373	814.382096	0.49275	0.00040179	0.28019	0.00022846	0.77294	0.00063025	815.3895238721382	18.462	0.41765	18.099	17.851	18.269	-0.36325					15	7	3	0	0	0	0.0068642	1	6336	6336		121.35	21.591	1	17003000			2092	4362	996	1011	2105	2105					-0.032519269587737654
AEQGPAATA	9	Unmodified	_AEQGPAATA_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MSMS	HCT116MG_D190212_S3	3	815.3904418945312	1	815.389373	814.382096	0.8278	0.00067498	0.16753	0.0001366	0.99533	0.00081158	815.3893882852099	17.943	0.46814	18.02	17.789	18.257	0.076677					19	8	3	0	0	0	0.0082095	1	6057	6057		117.76	21.65	1	10072000			2093	4362	996	1011	2106	2106					-0.032519269587737654
AEQGPAQQP	9	Unmodified	_AEQGPAQQP_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	463.2227783203125	2	463.222331	924.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.215	1	17.859	17.359	18.359	-0.35647								0	0	0	0.0099415	1	6247	6247		106.94	25.327	1				2094	2330	997	1012	2107	2107					-0.03512853038716912
AEQGQVCTV	9	Unmodified	_AEQGQVCTV_					0	0	0		ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	MULTI-MSMS	HCT116MG_D190212_S3	3	934.4296264648438	1	934.429858	933.422581	0.92396	0.00086338	-0.73988	-0.00069137	0.18408	0.00017201	934.4292978865427	29.925	0.31905	29.689	29.555	29.874	-0.23655					9	5	2	0	0	0	0.034046	1	10923	10923		82.529	13.424	1	4588900			2095	1759	998	1013	2108	2108					-0.046793286306410664
AEQGRQAP	8	Unmodified	_AEQGRQAP_					0	0	0			REV__ENST00000528273.5_1_17:43509005-43510572:-|nuORF	REV__ENST00000528273.5_1_17:43509005-43510572:-|nuORF	MSMS	HCT116MG_D190212_S2	2	428.7174987792969	2	428.717216	855.419879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.252	1	14.925	14.425	15.425	-0.32684								0	0	0	0.33717	1	5054	5054		52.268	0.63854	1		+		2096	16295	999	1014	2109	2109					-0.013614159733037923
AEQHGVWTA	9	Unmodified	_AEQHGVWTA_					0	0	0		CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant;ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant	CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	499.7384033203125	2	499.738148	997.461744	0.33521	0.00016752	0.53188	0.0002658	0.86709	0.00043332	499.7383598793197	31.949	0.2599	31.676	31.532	31.792	-0.27258					6	4	2	0	0	0	0.26031	1	11718	11718		34.932	13.185	1	3879200			2097	398	1000	1015	2110	2110					-0.0370886028475752
AEQIARWIA	9	Unmodified	_AEQIARWIA_					0	0	0		ENST00000476168.1_1_X:77112151-77150907:-|nuORF;ENSG00000102158|ENST00000618282|MAGT1	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2931518554688	2	529.293091	1056.57163	0.6175	0.00032684	-0.4154	-0.00021987	0.2021	0.00010697	529.2928420361625	45.936	0.26437	45.625	45.512	45.777	-0.31094					8	5	2	0	0	0	0.029121	1	17227	17227		87.258	47.309	1	7145700			2098	1827	1001	1016	2111	2111					0.04560565054430299
AEQIARWIA	9	Unmodified	_AEQIARWIA_					0	0	0		ENST00000476168.1_1_X:77112151-77150907:-|nuORF;ENSG00000102158|ENST00000618282|MAGT1	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	MSMS	HCT116MG_D190212_S4	4	529.2933349609375	2	529.293091	1056.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.05	1	45.678	45.178	46.178	-0.37206								0	0	0	0.11662	1	17008	17008		53.404	18.472	1				2099	1827	1001	1016	2112	2112					0.04560565054430299
AEQIARWIA	9	Unmodified	_AEQIARWIA_					0	0	0		ENST00000476168.1_1_X:77112151-77150907:-|nuORF;ENSG00000102158|ENST00000618282|MAGT1	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	529.293091	1056.57163	0.35287	0.00018677	-0.76261	-0.00040364	-0.40973	-0.00021687	529.7942236521725	45.402	0.20782	45.402	45.295	45.503	0	-0.11134	-0.00014082	NaN	87.258	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2468000			2100	1827	1001	1016							0.04560565054430299
AEQIKHILA	9	Unmodified	_AEQIKHILA_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S1	1	511.8034362792969	2	511.803291	1021.59203	0.52271	0.00026753	0.08763	4.4849E-05	0.61034	0.00031237	511.8032931862364	29.452	0.41667	29.452	29.269	29.685	0					18	7	4	0	0	0	0.026272	1	10766	10766		90.135	37.867	1	197340000			2101	3226	1002	1017	2113	2113					0.08209735714217459
AEQIKHILA	9	Unmodified	_AEQIKHILA_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	511.80364990234375	2	511.803291	1021.59203	0.066693	3.4134E-05	0.080257	4.1076E-05	0.14695	7.521E-05	511.80330390858524	29.977	0.46471	29.693	29.512	29.976	-0.28453					28	8	5	0	0	0	0.026272	1	10993	10993		90.135	44.114	1	889640000			2102	3226	1002	1017	2114	2114					0.08209735714217459
AEQIKHILA	9	Unmodified	_AEQIKHILA_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	1022.599853515625	1	1022.59931	1021.59203	0.47184	0.00048251	-0.21824	-0.00022317	0.2536	0.00025933	1022.5993048408756	29.977	0.20621	29.693	29.564	29.77	-0.28453					9	3	3	0	0	0	0.0068427	1	11011	11011		121.53	69.266	1	46202000			2103	3226	1002	1017	2115	2115					0.08209735714217459
AEQIKHILA	9	Unmodified	_AEQIKHILA_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S3	3	511.80352783203125	2	511.803291	1021.59203	0.34513	0.00017664	0.034725	1.7772E-05	0.37986	0.00019441	511.8032488198731	29.957	0.42586	29.72	29.5	29.926	-0.23655					20	7	4	0	0	0	0.016412	1	10890	10890		100.09	47.822	1	85162000			2104	3226	1002	1017	2116	2116					0.08209735714217459
AEQIKHILA	9	Unmodified	_AEQIKHILA_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S4	4	511.8034362792969	2	511.803291	1021.59203	0.17547	8.9808E-05	0.21799	0.00011157	0.39347	0.00020138	511.80336600982554	30.192	0.26004	29.835	29.649	29.909	-0.35711					10	4	3	0	0	0	0.037825	1	10937	10937		80.676	40.719	1	14401000			2105	3226	1002	1017	2117	2117					0.08209735714217459
AEQILQHMV	9	Unmodified	_AEQILQHMV_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1;ENST00000567762.1_1_15:72767286-72810465:+|nuORF	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7788696289062	2	534.778959	1067.54336	0.53085	0.00028389	2.3141	0.0012375	2.8449	0.0015214	534.7786341722427	43.461	0.30947	43.155	42.982	43.292	-0.30597					16	5	4	0	0	0	0.10554	1	16227	16227		70.332	38.215	1	18184000			2106	4833	1003	1018	2118	2118					0.012294990828195296
AEQILQHMV	9	Unmodified	_AEQILQHMV_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1;ENST00000567762.1_1_15:72767286-72810465:+|nuORF	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	534.778959	1067.54336	0.41659	0.00022279	-0.62767	-0.00033567	-0.21108	-0.00011288	534.7784054331427	43.55	0.19057	43.176	43.076	43.267	-0.37433	0.0104	-0.00039334	NaN	70.332	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3176100			2107	4833	1003	1018							0.012294990828195296
AEQINEHVSGP	11	Unmodified	_AEQINEHVSGP_					0	0	0		ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	590.7838134765625	2	590.783284	1179.55202	0.80506	0.00047562	0.035633	2.1052E-05	0.8407	0.00049667	590.7832287174697	24.021	0.57174	23.637	23.299	23.871	-0.38324					23	10	3	0	0	0	0.44062	1	8594	8594		51.415	5.6754	1	33743000			2108	4556	1004	1019	2119	2119					-0.030578557470107626
AEQINEHVSGP	11	Unmodified	_AEQINEHVSGP_					0	0	0		ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	590.7830810546875	2	590.783284	1179.55202	0.55736	0.00032928	-0.12419	-7.337E-05	0.43317	0.00025591	590.7831987474448	23.67	0.57323	23.63	23.239	23.812	-0.03968					27	10	3	0	0	0	0.52297	1	8304	8304		43.982	7.4756	1	25014000			2109	4556	1004	1019	2120	2120					-0.030578557470107626
AEQINEHVSGP	11	Unmodified	_AEQINEHVSGP_					0	0	0		ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	590.783284	1179.55202	0.80506	0.00047562	0.035633	2.1052E-05	0.8407	0.00049667	590.7832287174697	24.021	0.57174	23.637	23.299	23.871	-0.38324	0.0074223	0.0001299	NaN	51.415	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33743000			2110	4556	1004	1019							-0.030578557470107626
AEQINEHVSGP	11	Unmodified	_AEQINEHVSGP_					0	0	0		ENST00000468692.1_1_1:111730229-111731929:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	ENST00000468692.1_1_1:111730229-111731929:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	590.783284	1179.55202	0.55736	0.00032928	-0.12419	-7.337E-05	0.43317	0.00025591	590.7831987474448	23.67	0.57323	23.63	23.239	23.812	-0.03968	8.0349E-05	-5.8943E-05	NaN	51.415	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25014000			2111	4556	1004	1019							-0.030578557470107626
AEQINKMEA	9	Unmodified	_AEQINKMEA_					0	0	0		ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	517.252685546875	2	517.252774	1032.491	0.32579	0.00016852	-0.53539	-0.00027693	-0.20959	-0.00010841	517.2523757401344	25.061	0.26206	25.061	24.882	25.144	0					8	4	3	0	0	0	0.11491	1	9007	9007		55.249	18.174	1	7750600			2112	1744	1005	1020	2121	2121					-0.023950840507950488
AEQINKMEA	9	Unmodified	_AEQINKMEA_					0	0	0		ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	517.2529907226562	2	517.252774	1032.491	0.21134	0.00010932	0.0075663	3.9137E-06	0.21891	0.00011323	517.2527153120108	25.478	0.26115	25.109	24.926	25.187	-0.36914					13	4	4	0	0	0	0.0048001	1	9177	9177		139.38	59.782	1	81372000			2113	1744	1005	1020	2122	2122					-0.023950840507950488
AEQINKMEA	9	Unmodified	_AEQINKMEA_					0	0	0		ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	517.2528686523438	2	517.252774	1032.491	0.34305	0.00017744	0.18135	9.3801E-05	0.52439	0.00027124	517.2527836378209	25.18	0.26084	25.074	24.943	25.204	-0.10618					14	4	4	0	0	0	0.0048001	1	8981	8981		139.38	56.849	1	59548000			2114	1744	1005	1020	2123	2123					-0.023950840507950488
AEQINKMEA	9	Unmodified	_AEQINKMEA_					0	0	0		ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	517.2529296875	2	517.252774	1032.491	0.41991	0.0002172	-0.24284	-0.00012561	0.17707	9.1588E-05	517.2525829182775	25.416	0.26007	25.136	25.006	25.266	-0.27958					9	4	3	0	0	0	0.01206	1	9009	9009		108.26	44.302	1	13939000			2115	1744	1005	1020	2124	2124					-0.023950840507950488
AEQINKMEA	9	Oxidation (M)	_AEQINKM(Oxidation (M))EA_		AEQINKM(1)EA		AEQINKM(57)EA	0	0	1		ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2501831054688	2	525.250231	1048.48591	0.38149	0.00020038	-0.14547	-7.6406E-05	0.23602	0.00012397	525.2500635007368	17.811	0.52213	17.454	17.18	17.702	-0.35647					10	9	2	0	0	0	0.10554	1	6095	6095		57.108	24.322	1	8747600			2116	1744	1005	1021	2125	2125		31			-0.0363938791340388
AEQINKMEA	9	Oxidation (M)	_AEQINKM(Oxidation (M))EA_		AEQINKM(1)EA		AEQINKM(95)EA	0	0	1		ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2503662109375	2	525.250231	1048.48591	0.22255	0.00011689	0.65255	0.00034275	0.87509	0.00045964	525.2505326000233	16.906	0.41636	16.99	16.86	17.277	0.084467					10	7	2	0	0	0	0.021544	1	5646	5646		94.909	51.136	1	5525600			2117	1744	1005	1021	2126	2126		31			-0.0363938791340388
AEQIVPLSA	9	Unmodified	_AEQIVPLSA_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ENST00000507620.2_1_3:142215312-142218583:-|nuORF	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	HCT116MG_D190212_S3	3	927.5140991210938	1	927.514573	926.507297	1.0958	0.0010164	-0.84026	-0.00077935	0.25554	0.00023701	927.5138055869292	44.197	0.25953	43.89	43.708	43.967	-0.30759					8	4	2	0	0	0	0.066823	1	16542	16542		66.457	18.111	1	5683400			2118	5359	1006	1022	2127	2127					0.04110365177598396
AEQIVPLSA	9	Unmodified	_AEQIVPLSA_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ENST00000507620.2_1_3:142215312-142218583:-|nuORF	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	HCT116MG_D190212_S4	4	927.515625	1	927.514573	926.507297	0.74425	0.00069031	-0.040816	-3.7857E-05	0.70344	0.00065245	927.5144355867939	44.315	0.23896	43.941	43.83	44.069	-0.37373					6	4	2	0	0	0	0.026999	1	16334	16334		89.401	29.327	1	2299200			2119	5359	1006	1022	2128	2128					0.04110365177598396
AEQKAFEVI	9	Unmodified	_AEQKAFEVI_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2;CBFA2T2|p.A452V|1|0.3|ENSG00000078699|chr20:33640371-33640371|C/T|missense_variant	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MSMS	HCT116MG_D190212_S3	3	517.7796020507812	2	517.779482	1033.54441	0.31701	0.00016414	0.2932	0.00015181	0.61021	0.00031596	517.7794992402921	43.416	0.25737	43.111	42.984	43.241	-0.30472					7	4	2	0	0	0	0.051033	1	16232	16232		74.2	7.743	1	8542700			2120	1372	1007	1023	2129	2129					0.028980367233771176
AEQKAFEVI	9	Unmodified	_AEQKAFEVI_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2;CBFA2T2|p.A452V|1|0.3|ENSG00000078699|chr20:33640371-33640371|C/T|missense_variant	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MSMS	HCT116MG_D190212_S4	4	517.7796630859375	2	517.779482	1033.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.649	1	43.274	42.774	43.774	-0.37433								0	0	0	0.067027	1	16052	16052		65.474	7.7517	1				2121	1372	1007	1023	2130	2130					0.028980367233771176
AEQKAFEVI	9	Unmodified	_AEQKAFEVI_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2;CBFA2T2|p.A452V|1|0.3|ENSG00000078699|chr20:33640371-33640371|C/T|missense_variant	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MATCH	HCT116MG_D190212_S4	4		2	517.779482	1033.54441	0.25237	0.00013067	0.11384	5.8944E-05	0.36621	0.00018962	517.7795730918725	43.585	0.15298	43.21	43.114	43.267	-0.37433	0.049729	-0.00013726	NaN	74.2	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3431500			2122	1372	1007	1023							0.028980367233771176
AEQKKLEAA	9	Unmodified	_AEQKKLEAA_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	nc|ENSG00000181019|P15559-3|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	ENST00000569118.1_1_16:69751908-69760342:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	494.277099609375	2	494.277106	986.53966	0.33873	0.00016743	-0.074357	-3.6753E-05	0.26437	0.00013067	494.27692466926914	16.591	0.26026	16.591	16.421	16.681	0					8	4	3	0	0	0	0.051033	1	5603	5603		74.2	28.179	1	5692600			2123	5617;8878	1008	1024	2131	2131					0.0458515258060288
AEQKKLEAA	9	Unmodified	_AEQKKLEAA_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	nc|ENSG00000181019|P15559-3|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	ENST00000569118.1_1_16:69751908-69760342:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	494.27716064453125	2	494.277106	986.53966	0.34263	0.00016936	0.16554	8.1822E-05	0.50817	0.00025118	494.2770771519134	17.093	0.46905	16.743	16.561	17.03	-0.34933					13	8	2	0	0	0	0.0034297	1	5797	5797		159.1	48.308	1	40249000			2124	5617;8878	1008	1024	2132	2132					0.0458515258060288
AEQKLRIQA	9	Unmodified	_AEQKLRIQA_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.7738037109375	2	528.811648	1055.60874	0.54776	0.00028966	-0.15438	-8.1639E-05	0.39338	0.00020802	528.8115574237105	27.176	0.21154	26.823	26.659	26.871	-0.35254					6	3	2	0	0	0	0.17737	1	9823	9823		37.075	5.8063	1	7011300			2125	3182	1009	1025	2133	2133					0.08316236600194316
AEQKLRIQA	9	Unmodified	_AEQKLRIQA_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	HCT116MG_D190212_S3	3	528.8117065429688	2	528.811648	1055.60874	0.49133	0.00025982	-0.25233	-0.00013343	0.23901	0.00012639	528.8115776199636	26.898	0.26042	26.729	26.547	26.807	-0.16933					10	4	3	0	0	0	0.0158	1	9675	9675		100.71	27.741	1	7578800			2126	3182	1009	1025	2134	2134					0.08316236600194316
AEQKLRIQA	9	Unmodified	_AEQKLRIQA_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	HCT116MG_D190212_S4	4	528.811767578125	2	528.811648	1055.60874	0.50074	0.0002648	-0.19869	-0.00010507	0.30205	0.00015973	528.8115716295714	27.132	0.20808	26.821	26.69	26.899	-0.3114					6	3	2	0	0	0	0.056114	1	9706	9706		71.708	16.205	1	1896000			2127	3182	1009	1025	2135	2135					0.08316236600194316
AEQKQQIEP	9	Unmodified	_AEQKQQIEP_					0	0	0		ENST00000460374.1_1_13:21331509-21331737:-|nuORF;ENSG00000150456|ENST00000382758|EEF1AKMT1	ENST00000460374.1_1_13:21331509-21331737:-|nuORF	ENST00000460374.1_1_13:21331509-21331737:-|nuORF	MSMS	HCT116MG_D190212_S3	3	535.7777099609375	2	535.77747	1069.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.899	1	21.9	21.4	22.4	0.00074577								0	0	0	0.063593	1	7655	7655		66.457	20.436	1				2128	4084	1010	1026	2136	2136					0.00839947229678728
AEQKRLKTV	9	Unmodified	_AEQKRLKTV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	536.8276977539062	2	536.827298	1071.64004	0.48892	0.00026247	0.47703	0.00025608	0.96595	0.00051855	536.8273201710095	17.144	0.20832	16.795	16.665	16.873	-0.34933					7	3	3	0	0	0	0.066634	1	5842	5842		79.427	43.815	1	11371000			2129	3346	1011	1027	2137	2137					0.10708809634274985
AEQKSVETA	9	Unmodified	_AEQKSVETA_					0	0	0		ENSG00000133805|ENST00000396553|AMPD3;nc|ENSG00000133805|Q01432-5|AMPD3;nc|ENSG00000133805|Q01432-4|AMPD3;ENST00000529835.6_1_11:10471944-10503658:+|nuORF;nc|ENSG00000133805|Q01432-2|AMPD3;AMPD3|p.N217Tfs*42|1|0.13|ENSG00000133805|chr11:10484873-10484873|C/-|frameshift_variant;nc|ENSG00000133805|Q01432-3|AMPD3	ENSG00000133805|ENST00000396553|AMPD3	ENSG00000133805|ENST00000396553|AMPD3	MSMS	HCT116MG_D190212_S2	2	481.74261474609375	2	481.743096	961.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.409	1	16.067	15.567	16.567	-0.34183								0	0	0	0.14408	1	5520	5520		51.415	15.288	1				2130	3250	1012	1028	2138	2138					-0.010637170700533716
AEQLAEKINA	10	Unmodified	_AEQLAEKINA_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	HCT116MG_D190212_S3	3	543.7933349609375	2	543.793121	1085.57169	0.54136	0.00029439	-0.024846	-1.3511E-05	0.51651	0.00028088	543.7929591678362	30.115	0.21004	29.865	29.755	29.965	-0.24946					6	3	2	0	0	0	0.044769	1	10984	10984		91.085	47.103	1	3374900			2131	3926	1013	1029	2139	2139					0.032325202637593975
AEQLAEKINA	10	Unmodified	_AEQLAEKINA_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MATCH	HCT116MG_D190212_S4	4		2	543.793121	1085.57169	0.4505	0.00024498	0.5797	0.00031523	1.0302	0.00056022	544.2953213288496	30.292	0.20778	29.935	29.753	29.961	-0.3571	0.034799	0.00061725	NaN	91.085	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2422800			2132	3926	1013	1029							0.032325202637593975
AEQLEDKKRKA	11	Unmodified	_AEQLEDKKRKA_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	HCT116MG_D190212_S2	2	439.24920654296875	3	439.249131	1314.72556	-0.036808	-1.6168E-05	0.14177	6.2272E-05	0.10496	4.6104E-05	439.2491079991082	10.24	0.42107	9.9758	9.7558	10.177	-0.26472					43	26	2	0	0	0	0.56597	2	3247	3182;3247		32.518	24.232	1	901770			2133	912	1014	1030	2140;2141	2141					0.08078930029273579
AEQLEDKKRKA	11	Unmodified	_AEQLEDKKRKA_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	HCT116MG_D190212_S2	2	658.37060546875	2	658.370058	1314.72556	0.38141	0.00025111	0.080604	5.3067E-05	0.46201	0.00030418	658.3701767435754	10.193	0.20131	9.9285	9.8557	10.057	-0.26472					19	12	2	0	0	0	0.72786	2	3198	3198;3243		11.518	7.3284	1	390240			2134	912	1014	1030	2142;2143	2142					0.08078930029273579
AEQLHEPP	8	Unmodified	_AEQLHEPP_					0	0	0			REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MSMS	HCT116MG_D190212_S1	1	460.72882080078125	2	460.727249	919.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.374	1	21.374	20.874	21.874	0								0	0	0	0.77419	1	7515	7515		24.674	11.166	1		+		2135	17089	1015	1031	2144	2144					-0.02299665033342535
AEQLIKHAV	9	Unmodified	_AEQLIKHAV_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	HCT116MG_D190212_S1	1	504.7955627441406	2	504.795466	1007.57638	0.42612	0.00021511	0.63046	0.00031825	1.0566	0.00053336	504.7953026275634	26.475	0.46859	26.475	26.345	26.813	0					13	8	3	0	0	0	0.032914	1	9576	9576		83.429	39.656	1	16117000			2136	1124	1016	1032	2145	2145					0.07289449197173781
AEQLIKHAV	9	Unmodified	_AEQLIKHAV_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7956237792969	2	504.795466	1007.57638	0.4118	0.00020787	-0.090914	-4.5893E-05	0.32088	0.00016198	504.7953772308979	26.878	0.31629	26.526	26.396	26.713	-0.35254					14	5	4	0	0	0	0.02327	1	9746	9746		93.166	43.233	1	92159000			2137	1124	1016	1032	2146	2146					0.07289449197173781
AEQLIKHAV	9	Unmodified	_AEQLIKHAV_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	HCT116MG_D190212_S3	3	504.7956237792969	2	504.795466	1007.57638	0.43931	0.00022176	-0.039691	-2.0036E-05	0.39962	0.00020173	504.79535014389023	26.586	0.20811	26.437	26.307	26.515	-0.14924					9	3	3	0	0	0	0.014023	1	9545	9545		103.42	51.151	1	16077000			2138	1124	1016	1032	2147	2147					0.07289449197173781
AEQLIRVY	8	Unmodified	_AEQLIRVY_					0	0	0		ENST00000465985.1_1_20:35526176-35532601:-|nuORF;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1	ENST00000465985.1_1_20:35526176-35532601:-|nuORF	ENST00000465985.1_1_20:35526176-35532601:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	496.2828063964844	2	496.282192	990.549831	0.31605	0.00015685	0.61868	0.00030704	0.93474	0.00046389	496.2824613511261	42.162	0.30983	42.094	41.913	42.223	-0.068199					7	5	2	0	0	0	0.1893	1	15983	15983		75.761	31.903	1	12460000			2139	1779	1017	1033	2148	2148					0.05417760305851971
AEQLIRVY	8	Unmodified	_AEQLIRVY_					0	0	0		ENST00000465985.1_1_20:35526176-35532601:-|nuORF;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1	ENST00000465985.1_1_20:35526176-35532601:-|nuORF	ENST00000465985.1_1_20:35526176-35532601:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	496.95404052734375	2	496.282192	990.549831	0.38698	0.00019205	0.52079	0.00025846	0.90777	0.00045051	496.2824490583567	42.474	0.20908	42.17	42.04	42.249	-0.30352					5	3	2	0	0	0	0.22358	1	15837	15837		41.84	13.353	1	3813800			2140	1779	1017	1033	2149	2149					0.05417760305851971
AEQLLSGEP	9	Unmodified	_AEQLLSGEP_					0	0	0			REV__ENST00000525370.5_1_19:50310410-50314932:-|nuORF	REV__ENST00000525370.5_1_19:50310410-50314932:-|nuORF	MSMS	HCT116MG_D190212_S3	3	472.2400207519531	2	472.24019	942.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.608	1	25.48	24.98	25.98	-0.12795								0	0	0	0.61599	1	9150	9150		23.148	0	1		+		2141	10518	1018	1034	2150	2150					-0.007708155817113038
AEQLLSGEP	9	Unmodified	_AEQLLSGEP_					0	0	0			REV__ENST00000525370.5_1_19:50310410-50314932:-|nuORF	REV__ENST00000525370.5_1_19:50310410-50314932:-|nuORF	MSMS	HCT116MG_D190212_S4	4	472.23974609375	2	472.24019	942.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.392	1	29.043	28.543	29.543	-0.34921								0	0	0	0.53872	1	10612	10612		26.884	5.137	1		+		2142	10518	1018	1034	2151	2151					-0.007708155817113038
AEQLPRLQA	9	Unmodified	_AEQLPRLQA_					0	0	0		nc|ENSG00000103248|Q2M296-4|MTHFSD;nc|ENSG00000103248|Q2M296-3|MTHFSD;ENST00000546093.5_1_16:86580251-86588800:-|nuORF	nc|ENSG00000103248|Q2M296-4|MTHFSD	nc|ENSG00000103248|Q2M296-4|MTHFSD	MULTI-MSMS	HCT116MG_D190212_S3	3	513.2905883789062	2	513.290548	1024.56654	0.21405	0.00010987	1.2867	0.00066047	1.5008	0.00077034	513.2906126734808	37.096	0.31228	36.795	36.613	36.925	-0.30137					10	5	3	0	0	0	0.20983	1	13769	13769		40.239	4.1122	1	3321600			2143	9409	1019	1035	2152	2152					0.055242611917947215
AEQLRGFNA	9	Unmodified	_AEQLRGFNA_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MSMS	HCT116MG_D190212_S2	2	503.2595520019531	2	503.259248	1004.50394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.536	1	33.343	32.843	33.843	-0.19297								0	0	0	0.029033	1	12448	12448		83.429	19.192	1				2144	6104	1020	1036	2153	2153					0.0018711512360596316
AEQLRGFNA	9	Unmodified	_AEQLRGFNA_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	HCT116MG_D190212_S3	3	503.2596130371094	2	503.259248	1004.50394	0.39381	0.00019819	0.43725	0.00022005	0.83107	0.00041824	503.25952662277507	33.672	0.3107	33.382	33.2	33.511	-0.29013					7	5	2	0	0	0	0.051033	1	12373	12373		74.2	12.842	1	6871000			2145	6104	1020	1036	2154	2154					0.0018711512360596316
AEQLRGFNA	9	Unmodified	_AEQLRGFNA_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MATCH	HCT116MG_D190212_S4	4		2	503.259248	1004.50394	0.50437	0.00025383	-0.038904	-1.9579E-05	0.46547	0.00023425	503.76053826428466	33.721	0.1504	33.337	33.263	33.413	-0.38426	-0.022414	-0.00027192	NaN	74.2	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1848800			2146	6104	1020	1036							0.0018711512360596316
AEQLSHQA	8	Unmodified	_AEQLSHQA_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	MULTI-MSMS	HCT116MG_D190212_S1	1	442.2166748046875	2	442.217049	882.419545	0.26251	0.00011609	-0.31472	-0.00013918	-0.052215	-2.3091E-05	442.2168035587903	17.385	0.20877	17.385	17.255	17.463	0					6	3	2	0	0	0	0.2491	1	5916	5916		63.961	10.128	1	5673000			2147	4472	1021	1037	2155	2155					-0.02636835693147077
AEQLSHQA	8	Unmodified	_AEQLSHQA_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	MULTI-MSMS	HCT116MG_D190212_S2	2	442.21710205078125	2	442.217049	882.419545	0.12022	5.3163E-05	0.10014	4.4282E-05	0.22036	9.7445E-05	442.2169981864194	17.823	0.41774	17.467	17.284	17.702	-0.35647					11	7	2	0	0	0	0.061818	1	6091	6091		110.67	21.721	1	52596000			2148	4472	1021	1037	2156	2156					-0.02636835693147077
AEQLSHQA	8	Unmodified	_AEQLSHQA_					0	0	0		ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	ENSG00000160957|ENST00000617875|RECQL4	MULTI-MSMS	HCT116MG_D190212_S2	2	883.427001953125	1	883.426821	882.419545	0.79311	0.00070065	-0.031259	-2.7615E-05	0.76185	0.00067304	883.4267180650265	17.823	0.20896	17.467	17.336	17.545	-0.35647					6	3	2	0	0	0	0.055124	1	6102	6102		117.76	35.87	1	9130700			2149	4472	1021	1037	2157	2157					-0.02636835693147077
AEQLVHVVS	9	Unmodified	_AEQLVHVVS_					0	0	0		VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.I1913*|1|0.3|ENSG00000132549|chr8:99642246-99642246|A/-|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;ENST00000521932.1_1_8:100168860-100253210:+|nuORF	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	491.2719421386719	2	491.271824	980.529095	0.10087	4.9554E-05	-0.21328	-0.00010478	-0.11241	-5.5224E-05	491.27164663143924	34.382	0.26006	34.088	33.923	34.184	-0.29419					6	4	2	0	0	0	0.17423	1	12675	12675		43.982	17.641	1	3952300			2150	3192	1022	1038	2158	2158					0.038051699261814065
AEQLVKEGA	9	Unmodified	_AEQLVKEGA_					0	0	0		ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant;ENSG00000180357|ENST00000326648|ZNF609	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	472.7555847167969	2	472.756007	943.497461	0.18607	8.7964E-05	0.10962	5.1826E-05	0.29569	0.00013979	472.75562908288964	23.601	0.2088	23.601	23.471	23.679	0					5	3	2	0	0	0	0.22946	1	8440	8440		38.176	0.20157	1	4581000			2151	5596	1023	1039	2159	2159					0.023451771722307058
AEQLVKEGA	9	Unmodified	_AEQLVKEGA_					0	0	0		ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant;ENSG00000180357|ENST00000326648|ZNF609	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	472.7560119628906	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.092	1	23.71	23.21	24.21	-0.38204								0	0	0	0.031974	1	8617	8617		80.676	15.441	1				2152	5596	1023	1039	2160	2160					0.023451771722307058
AEQLVKEGA	9	Unmodified	_AEQLVKEGA_					0	0	0		ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant;ENSG00000180357|ENST00000326648|ZNF609	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	472.756103515625	2	472.756007	943.497461	0.21508	0.00010168	-0.075743	-3.5808E-05	0.13933	6.5871E-05	472.7559254672993	23.568	0.46897	23.528	23.396	23.865	-0.03968					14	8	3	0	0	0	0.0064416	1	8329	8329		125.04	21.684	1	18794000			2153	5596	1023	1039	2161	2161					0.023451771722307058
AEQLVKEGA	9	Unmodified	_AEQLVKEGA_					0	0	0		ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant;ENSG00000180357|ENST00000326648|ZNF609	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	472.75604248046875	2	472.756007	943.497461	0.31952	0.00015105	0.23544	0.0001113	0.55496	0.00026236	472.7559085623783	23.841	0.31199	23.583	23.417	23.729	-0.25816					8	5	2	0	0	0	0.022505	1	8380	8380		93.938	30.711	1	6413900			2154	5596	1023	1039	2162	2162					0.023451771722307058
AEQMASVQNA	10	Unmodified	_AEQMASVQNA_					0	0	0		TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant	TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2487182617188	2	524.740031	1047.46551	0.4713	0.00024731	-0.40989	-0.00021509	0.061404	3.2221E-05	524.7396818593438	25.659	0.26023	25.531	25.39	25.65	-0.12795					6	4	2	0	0	0	0.35312	2	9157	9157;9194		45.74	21.026	1	5726900			2155	2627	1024	1040	2163;2164	2163					-0.056325585732110994
AEQMASVQNA	10	Unmodified	_AEQMASVQNA_					0	0	0		TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant	TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	524.7400512695312	2	524.740031	1047.46551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.863	1	25.573	25.073	26.073	-0.29022								0	0	0	0.86501	1	9186	9186		20.415	3.3016	1				2156	2627	1024	1040	2165	2165					-0.056325585732110994
AEQMASVQNA	10	Unmodified	_AEQMASVQNA_					0	0	0		TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant;TJP2|p.T849Rfs*12|1|0.32|ENSG00000119139|chr9:69240120-69240120|A/-|frameshift_variant;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant	TJP2|p.F813Sfs*12|1|0.23|ENSG00000119139|chr9:69240013-69240013|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	524.740031	1047.46551	0.43707	0.00022935	-0.74527	-0.00039107	-0.3082	-0.00016173	524.7398065257561	25.78	0.15607	25.49	25.412	25.568	-0.29022	-0.020469	-0.00029124	NaN	45.74	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2315600			2157	2627	1024	1040							-0.056325585732110994
AEQMRLAQV	9	Unmodified	_AEQMRLAQV_					0	0	0		UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2;ENST00000459988.1_1_9:33998751-34011627:-|nuORF;ENST00000480885.5_1_9:33998751-34017161:-|nuORF	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	523.2770385742188	2	523.276583	1044.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.302	1	36.002	35.502	36.502	-0.30042								0	0	0	0.11662	1	13409	13409		53.404	22.767	1				2158	3459	1025	1041	2166	2166					0.018126149400586655
AEQMVMVI	8	Unmodified	_AEQMVMVI_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MULTI-SECPEP	HCT116MG_D190212_S2	2	460.313232421875	2	460.732632	919.45071	0.09268	4.2701E-05	1.2474	0.00057471	1.3401	0.00061742	460.73301352785455	16.154	0.20902	15.82	15.689	15.898	-0.33451					5	3	2	0	0	0	0.30262	1	5368	5368		13.508	1.8676	1	1391000			2159	1787	1026	1042	2167	2167					-0.012237219749067663
AEQMVMVI	8	Unmodified	_AEQMVMVI_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	460.732632	919.45071	0.4174	0.00019231	0.0039023	1.7979E-06	0.4213	0.00019411	460.73258848255625	15.345	0.26025	15.428	15.35	15.61	0.083271	-0.19588	-0.00021791	NaN	19.439	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811480			2160	1787	1026	1042							-0.012237219749067663
AEQNAHMEA	9	Unmodified	_AEQNAHMEA_					0	0	0		nc|ENSG00000101546|Q8N0V3-2|RBFA;RBFA|p.R253Gfs*19|1|0.36|ENSG00000101546|chr18:80045877-80045877|A/-|frameshift_variant;ENSG00000101546|ENST00000306735|RBFA	nc|ENSG00000101546|Q8N0V3-2|RBFA	nc|ENSG00000101546|Q8N0V3-2|RBFA	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7112121582031	2	500.711273	999.407994	0.2043	0.00010229	0.2134	0.00010685	0.4177	0.00020915	500.71123879912295	18.971	0.31329	18.601	18.366	18.68	-0.3695					7	5	2	0	0	0	0.053079	1	6560	6560		73.196	38.795	1	9255900			2161	1797	1027	1043	2168	2168					-0.09173400778797713
AEQNAHMEA	9	Unmodified	_AEQNAHMEA_					0	0	0		nc|ENSG00000101546|Q8N0V3-2|RBFA;RBFA|p.R253Gfs*19|1|0.36|ENSG00000101546|chr18:80045877-80045877|A/-|frameshift_variant;ENSG00000101546|ENST00000306735|RBFA	nc|ENSG00000101546|Q8N0V3-2|RBFA	nc|ENSG00000101546|Q8N0V3-2|RBFA	MULTI-MSMS	HCT116MG_D190212_S3	3	500.71142578125	2	500.711273	999.407994	0.34042	0.00017045	0.013135	6.5768E-06	0.35356	0.00017703	500.71129891775377	18.05	0.25985	18.127	17.997	18.257	0.076334					8	4	2	0	0	0	0.37942	1	6132	6132		23.79	6.8475	1	2762300			2162	1797	1027	1043	2169	2169					-0.09173400778797713
AEQNSNTTP	9	Unmodified	_AEQNSNTTP_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	HCT116MG_D190212_S2	2	481.0210266113281	2	481.214703	960.414853	0.13838	6.6592E-05	0.50595	0.00024347	0.64434	0.00031007	481.2149346185252	16.363	0.31342	16.022	15.839	16.152	-0.34183					7	5	2	0	0	0	0.31596	1	5474	5474		29.082	0.59474	1	2133600			2163	9548	1028	1044	2170	2170					-0.06693764626572829
AEQNTQITSI	10	Unmodified	_AEQNTQITSI_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2816162109375	2	552.78021	1103.54587	0.68993	0.00038138	-1.9058	-0.0010535	-1.2158	-0.0006721	553.2804147085047	36.057	0.56721	35.929	35.555	36.122	-0.12799					18	10	3	0	0	0	0.11897	2	13525	13496;13525		70.332	22.6	1	30780000			2164	741	1029	1045	2171;2172	2172					-0.0017637397852467984
AEQNTQITSI	10	Unmodified	_AEQNTQITSI_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7802734375	2	552.78021	1103.54587	0.087474	4.8354E-05	-1.1714	-0.00064751	-1.0839	-0.00059916	552.7801678962493	36.288	0.57189	35.987	35.626	36.198	-0.30041					28	10	4	0	0	0	0.11897	1	13436	13436		70.332	28.492	1	20513000			2165	741	1029	1045	2173	2173					-0.0017637397852467984
AEQNTQITSI	10	Unmodified	_AEQNTQITSI_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2794799804688	2	552.78021	1103.54587	0.61015	0.00033728	-1.5099	-0.00083466	-0.89978	-0.00049738	552.779855153032	36.321	0.50423	35.935	35.673	36.177	-0.38558					15	9	3	0	0	0	0.072018	2	13300	13300;13318		79.596	28.376	1	4078800			2166	741	1029	1045	2174;2175	2174					-0.0017637397852467984
AEQPAKEDP	9	Unmodified	_AEQPAKEDP_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MSMS	HCT116MG_D190212_S2	2	492.7351379394531	2	492.735271	983.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.51	1	21.126	20.626	21.626	-0.38436								0	0	0	0.76575	1	7574	7574		15.847	1.9411	1		+		2167	13435	1030	1046	2176	2176					-0.03640003587099727
AEQPEQKAA	9	Unmodified	_AEQPEQKAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	486.242919921875	2	486.243264	970.471974	0.33727	0.000164	0.0077308	3.7591E-06	0.345	0.00016776	486.2431557907752	14.832	0.26016	14.832	14.702	14.962	0					9	4	3	0	0	0	0.030723	1	4895	4895		85.642	16.537	1	9888000			2168	3119	1031	1047	2177	2177					-0.014442973502013956
AEQPEQKAA	9	Unmodified	_AEQPEQKAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	486.2431640625	2	486.243264	970.471974	0.059994	2.9171E-05	0.28801	0.00014004	0.348	0.00016922	486.2433307841631	11.667	0.38305	11.385	11.204	11.587	-0.28186					39	15	3	0	0	0	0.26536	1	3741	3741		34.402	3.7652	1	2881800			2169	3119	1031	1047	2178	2178					-0.014442973502013956
AEQPEQKAA	9	Unmodified	_AEQPEQKAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	486.2433166503906	2	486.243264	970.471974	0.061164	2.974E-05	0.26322	0.00012799	0.32438	0.00015773	486.2433579574598	14.539	0.72951	14.219	14.088	14.818	-0.31952					26	13	4	0	0	0	0.004234	1	4771	4771		147.24	17.468	1	60278000			2170	3119	1031	1047	2179	2179					-0.014442973502013956
AEQPEQKAA	9	Unmodified	_AEQPEQKAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	971.4799194335938	1	971.479251	970.471974	0.50979	0.00049525	0.070402	6.8394E-05	0.58019	0.00056365	971.4793724025388	14.538	0.15658	14.218	14.14	14.296	-0.31952					4	2	2	0	0	0	0.00446	1	4790	4790		143.91	25.841	1	4196500			2171	3119	1031	1047	2180	2180					-0.014442973502013956
AEQPHRAAAP	10	Unmodified	_AEQPHRAAAP_					0	0	0		ENST00000589291.1_1_19:3015738-3019979:-|nuORF	ENST00000589291.1_1_19:3015738-3019979:-|nuORF	ENST00000589291.1_1_19:3015738-3019979:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	523.7537231445312	2	524.270147	1046.52574	0.3976	0.00020845	-0.74177	-0.00038889	-0.34417	-0.00018044	524.7711052717743	20.788	0.51915	20.578	20.344	20.863	-0.20959					10	9	2	0	0	0	0.29442	1	7047	7047		14.838	4.7643	1	1703600			2172	9022	1032	1048	2181	2181					0.004339198721481807
AEQPLGEASQN	11	Unmodified	_AEQPLGEASQN_					0	0	0			REV__HTR1D|p.P173Rfs*18|1|0.14|ENSG00000179546|chr1:23193702-23193702|G/-|frameshift_variant	REV__HTR1D|p.P173Rfs*18|1|0.14|ENSG00000179546|chr1:23193702-23193702|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	572.5210571289062	2	572.267467	1142.52038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.726	1	15.726	15.226	16.226	0								0	0	0	0.94942	1	5244	5244		6.6304	0.89852	1		+		2173	13641	1033	1049	2182	2182					-0.045178485009500946
AEQPPGGGDSA	11	Unmodified	_AEQPPGGGDSA_					0	0	0		NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant;nc|ENSG00000166886|Q15742-2|NAB2;nc|ENSG00000166886|Q15742-3|NAB2;ENSG00000166886|ENST00000300131|NAB2	NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant	NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	493.215576171875	2	493.214703	984.414853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.992	1	16.825	16.325	17.325	-0.16664								0	0	0	0.89672	1	5604	5604		20.415	6.9067	1				2174	9358	1034	1050	2183	2183					-0.07797764626559456
AEQPPHLTP	9	Unmodified	_AEQPPHLTP_					0	0	0		ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	MULTI-MSMS	HCT116MG_D190212_S2	2	495.2563781738281	2	495.256174	988.497795	0.12182	6.0334E-05	-0.5499	-0.00027234	-0.42807	-0.00021201	495.2557316729894	30.629	1.2892	30.357	29.731	31.02	-0.27245					68	24	5	0	0	0	0.026999	2	11360	11123;11360		89.401	30.722	1	650480000			2175	3959	1035	1051	2184;2185	2185					0.003085968920800042
AEQPPHLTP	9	Unmodified	_AEQPPHLTP_					0	0	0		ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	MULTI-MSMS	HCT116MG_D190212_S3	3	495.7862854003906	2	495.256174	988.497795	0.22213	0.00011001	-0.067553	-3.3456E-05	0.15458	7.6556E-05	495.2560574218807	30.703	1.4867	30.442	29.744	31.231	-0.26071					123	41	5	0	0	0	0.0059958	4	11197	11040;11079;11197;11266		128.93	57.01	1	487420000			2176	3959	1035	1051	2186;2187;2188;2189	2188					0.003085968920800042
AEQPPHLTP	9	Unmodified	_AEQPPHLTP_					0	0	0		ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	MULTI-MSMS	HCT116MG_D190212_S4	4	495.2563171386719	2	495.256174	988.497795	0.29755	0.00014737	0.023499	1.1638E-05	0.32105	0.000159	495.25611084978	30.851	1.1149	30.487	30.071	31.186	-0.36416					109	41	4	0	0	0	0.0067688	2	11216	11046;11216		122.18	54.098	1	254520000			2177	3959	1035	1051	2190;2191	2191					0.003085968920800042
AEQPPHLTP	9	Unmodified	_AEQPPHLTP_					0	0	0		ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	MULTI-MSMS	HCT116MG_D190212_S4	4	989.5048217773438	1	989.505071	988.497795	0.54775	0.000542	-0.30895	-0.0003057	0.2388	0.00023629	989.5042297539666	30.815	0.64113	30.45	30.181	30.822	-0.36416					35	19	3	0	0	0	0.0046822	1	11093	11093		140.63	64.872	1	8525400			2178	3959	1035	1051	2192	2192					0.003085968920800042
AEQPPHLTP	9	Unmodified	_AEQPPHLTP_					0	0	0		ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	MSMS	HCT116MG_D190212_S4	4	495.2564697265625	2	495.256174	988.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.384	1	30.027	29.527	30.527	-0.3571								0	0	0	0.76603	1	11012	11012		14.838	0.25658	1				2179	3959	1035	1051	2193	2193					0.003085968920800042
AEQPSDLH	8	Unmodified	_AEQPSDLH_					0	0	0			REV__ENST00000556605.5_1_14:69928661-69928766:+|nuORF	REV__ENST00000556605.5_1_14:69928661-69928766:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	449.2014465332031	2	448.709057	895.40356	0.11106	4.9832E-05	-0.10315	-4.6285E-05	0.0079045	3.5468E-06	448.7091854545378	17.875	0.57428	17.519	17.284	17.858	-0.35647					12	10	2	0	0	0	0.23993	1	6098	6098		34.102	0	1	2986800	+		2180	16466	1036	1052	2194	2194					-0.04832541930056777
AEQPTRYDTL	10	Unmodified	_AEQPTRYDTL_					0	0	0		SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	597.7948608398438	2	597.293485	1192.57242	-0.31707	-0.00018938	-0.41914	-0.00025035	-0.73621	-0.00043973	597.7949822172786	38.253	0.31266	38.253	38.071	38.384	0					7	5	2	0	0	0	0.2615	1	14355	14355		31.268	0	1	7459000			2181	18160	1037	1053	2195	2195					-0.016166850871968563
AEQPTRYDTL	10	Unmodified	_AEQPTRYDTL_					0	0	0		SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	597.2935791015625	2	597.293485	1192.57242	0.567	0.00033866	-0.73836	-0.00044102	-0.17137	-0.00010236	597.293026087972	38.338	0.25824	38.245	38.063	38.322	-0.09301					10	4	3	0	0	0	0.45751	1	14402	14402		38.176	0	1	44626000			2182	18160	1037	1053	2196	2196					-0.016166850871968563
AEQPTRYDTL	10	Unmodified	_AEQPTRYDTL_					0	0	0		SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	597.2935791015625	2	597.293485	1192.57242	0.46944	0.00028039	0.050157	2.9959E-05	0.51959	0.00031035	597.2936562769831	38.575	0.31204	38.274	38.092	38.404	-0.30137					12	5	3	0	0	0	0.26262	1	14309	14309		53.833	8.1332	1	12422000			2183	18160	1037	1053	2197	2197					-0.016166850871968563
AEQPTRYDTL	10	Unmodified	_AEQPTRYDTL_					0	0	0		SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	SLC25A24|p.E25D|1|0.25|ENSG00000085491|chr1:108200064-108200064|C/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	597.293485	1192.57242	0.97405	0.00058179	-0.40306	-0.00024074	0.57099	0.00034105	597.293326966297	38.72	0.20787	38.338	38.232	38.44	-0.38163	0.060826	-0.00022226	NaN	31.268	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2301800			2184	18160	1037	1053							-0.016166850871968563
AEQPYFIEA	9	Unmodified	_AEQPYFIEA_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	HCT116MG_D190212_S2	2	1067.505126953125	1	1067.5044	1066.49713	0.85832	0.00091626	0.20668	0.00022063	1.065	0.0011369	1067.5039252051165	47.845	0.25815	47.713	47.532	47.79	-0.13281					7	4	2	0	0	0	0.02327	1	18267	18267		93.166	53.216	1	31361000			2185	2812	1038	1054	2198	2198					-0.03346242547627298
AEQPYFIEA	9	Unmodified	_AEQPYFIEA_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2559204101562	2	534.25584	1066.49713	0.37711	0.00020147	0.44907	0.00023992	0.82617	0.00044139	534.255934962506	48.065	0.4694	47.749	47.566	48.036	-0.31596					15	8	3	0	0	0	0.014023	1	18055	18055		103.42	67.375	1	18487000			2186	2812	1038	1054	2199	2199					-0.03346242547627298
AEQPYFIEA	9	Unmodified	_AEQPYFIEA_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	HCT116MG_D190212_S3	3	1067.50439453125	1	1067.5044	1066.49713	0.45142	0.0004819	0.15198	0.00016224	0.6034	0.00064414	1067.5044020812888	48.065	0.36512	47.749	47.566	47.932	-0.31596					16	6	3	0	0	0	0.026999	1	18057	18057		89.401	58.764	1	15617000			2187	2812	1038	1054	2200	2200					-0.03346242547627298
AEQPYFIEA	9	Unmodified	_AEQPYFIEA_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	HCT116MG_D190212_S4	4	534.2562866210938	2	534.25584	1066.49713	0.43929	0.00023469	0.34138	0.00018238	0.78067	0.00041708	534.2559820151761	48.051	0.31089	47.682	47.519	47.83	-0.36907					10	5	3	0	0	0	0.053544	1	17791	17791		72.968	42.331	1	7999900			2188	2812	1038	1054	2201	2201					-0.03346242547627298
AEQPYFIEA	9	Unmodified	_AEQPYFIEA_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	HCT116MG_D190212_S4	4	1067.5047607421875	1	1067.5044	1066.49713	0.57398	0.00061272	0.15963	0.0001704	0.7336	0.00078312	1067.504321034813	48.049	0.31089	47.68	47.519	47.83	-0.36907					8	5	2	0	0	0	0.05892	1	17792	17792		70.332	43.448	1	6078200			2189	2812	1038	1054	2202	2202					-0.03346242547627298
AEQPYFIEA	9	Unmodified	_AEQPYFIEA_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MATCH	HCT116MG_D190212_S2	2		2	534.25584	1066.49713	0.79214	0.0004232	0.19126	0.00010218	0.9834	0.00052538	534.2559245501212	47.845	0.25815	47.713	47.532	47.79	-0.13281	-0.0017939	-0.00023231	NaN	103.42	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17496000			2190	2812	1038	1054							-0.03346242547627298
AEQQAALLLA	10	Unmodified	_AEQQAALLLA_					0	0	0		ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	MSMS	HCT116MG_D190212_S4	4	514.2926635742188	2	514.292756	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.11	1	49.751	49.251	50.251	-0.35878								0	0	0	0.17901	1	18607	18607		70.332	18.917	1				2191	4149	1039	1055	2203	2203					0.058737256147196604
AEQQHNPAANP	11	Unmodified	_AEQQHNPAANP_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MSMS	HCT116MG_D190212_S2	2	588.8241577148438	2	588.773251	1175.53195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.823	1	16.481	15.981	16.981	-0.34183								0	0	0	0.44935	1	5687	5687		49.742	19.901	1				2192	2873	1040	1056	2204	2204					-0.048796066869499555
AEQQHNPAANP	11	Unmodified	_AEQQHNPAANP_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	HCT116MG_D190212_S3	3	589.2593994140625	2	588.773251	1175.53195	0.48812	0.00028739	-0.90577	-0.00053329	-0.41765	-0.0002459	588.7727142288612	15.762	0.2603	15.847	15.769	16.029	0.085423					6	4	2	0	0	0	0.72218	1	5197	5197		13.615	2.7909	1	656200			2193	2873	1040	1056	2205	2205					-0.048796066869499555
AEQQKAQFTA	10	Unmodified	_AEQQKAQFTA_					0	0	0		ENSG00000150779|ENST00000504148|TIMM8B;ENST00000445940.1_1_X:133300719-133300959:+|nuORF	ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	MULTI-MSMS	HCT116MG_D190212_S1	1	561.2828979492188	2	561.28292	1120.55129	0.51552	0.00028935	-0.16245	-9.1178E-05	0.35307	0.00019817	561.2828067205743	24.378	0.15685	24.378	24.255	24.412	0					6	2	3	0	0	0	0.017977	1	8733	8733		124.95	58.496	1	7482600			2194	4093	1041	1057	2206	2206					-0.004166503960504997
AEQQKAQFTA	10	Unmodified	_AEQQKAQFTA_					0	0	0		ENSG00000150779|ENST00000504148|TIMM8B;ENST00000445940.1_1_X:133300719-133300959:+|nuORF	ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	MULTI-MSMS	HCT116MG_D190212_S2	2	561.282470703125	2	561.28292	1120.55129	0.44093	0.00024749	0.099287	5.5728E-05	0.54022	0.00030321	561.2828248950252	24.807	0.36318	24.432	24.296	24.66	-0.37521					19	6	4	0	0	0	0.0090819	1	8917	8917		154.04	74.44	1	82625000			2195	4093	1041	1057	2207	2207					-0.004166503960504997
AEQQKAQFTA	10	Unmodified	_AEQQKAQFTA_					0	0	0		ENSG00000150779|ENST00000504148|TIMM8B;ENST00000445940.1_1_X:133300719-133300959:+|nuORF	ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	MULTI-MSMS	HCT116MG_D190212_S3	3	561.2823486328125	2	561.28292	1120.55129	0.30694	0.00017228	0.14053	7.8875E-05	0.44747	0.00025116	561.2828838807854	24.348	0.36413	24.264	24.133	24.497	-0.083694					16	6	4	0	0	0	0.011898	1	8643	8643		139.38	63.617	1	32622000			2196	4093	1041	1057	2208	2208					-0.004166503960504997
AEQQKAQFTA	10	Unmodified	_AEQQKAQFTA_					0	0	0		ENSG00000150779|ENST00000504148|TIMM8B;ENST00000445940.1_1_X:133300719-133300959:+|nuORF	ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	MULTI-MSMS	HCT116MG_D190212_S4	4	561.2831420898438	2	561.28292	1120.55129	0.37003	0.00020769	-0.13923	-7.8147E-05	0.2308	0.00012954	561.2829626181912	24.688	0.41513	24.419	24.238	24.653	-0.26881					14	7	3	0	0	0	0.05194	1	8717	8717		85.764	28.042	1	7655800			2197	4093	1041	1057	2209	2209					-0.004166503960504997
AEQQLLHHA	9	Unmodified	_AEQQLLHHA_					0	0	0		OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant;OSBPL1A|p.N883Mfs*4|1|0.46|ENSG00000141447|chr18:24166590-24166590|T/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A;ENST00000579764.5_1_18:21927761-21957497:-|nuORF;ENST00000581343.1_1_18:21948241-21957497:-|nuORF;ENST00000582618.1_1_18:21948255-21957497:-|nuORF;ENST00000582350.5_1_18:21927721-21957497:-|nuORF	OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant	OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	523.7725830078125	2	523.772522	1045.53049	0.40208	0.0002106	-0.06813	-3.5685E-05	0.33395	0.00017491	523.7724985514043	23.708	0.31239	23.325	23.143	23.456	-0.38324					12	5	3	0	0	0	0.0096523	1	8467	8467		114.2	37.377	1	26125000			2198	3717	1042	1058	2210	2210					0.009548040149411463
AEQQLLHHA	9	Unmodified	_AEQQLLHHA_					0	0	0		OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant;OSBPL1A|p.N883Mfs*4|1|0.46|ENSG00000141447|chr18:24166590-24166590|T/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A;ENST00000579764.5_1_18:21927761-21957497:-|nuORF;ENST00000581343.1_1_18:21948241-21957497:-|nuORF;ENST00000582618.1_1_18:21948255-21957497:-|nuORF;ENST00000582350.5_1_18:21927721-21957497:-|nuORF	OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant	OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	523.7726440429688	2	523.772522	1045.53049	0.26361	0.00013807	-0.0043986	-2.3039E-06	0.25921	0.00013577	523.7725299647453	22.992	0.35213	22.973	22.699	23.051	-0.018869					11	6	3	0	0	0	0.0096523	1	8101	8101		114.2	46.363	1	15825000			2199	3717	1042	1058	2211	2211					0.009548040149411463
AEQQLLHHA	9	Unmodified	_AEQQLLHHA_					0	0	0		OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant;OSBPL1A|p.N883Mfs*4|1|0.46|ENSG00000141447|chr18:24166590-24166590|T/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A;ENST00000579764.5_1_18:21927761-21957497:-|nuORF;ENST00000581343.1_1_18:21948241-21957497:-|nuORF;ENST00000582618.1_1_18:21948255-21957497:-|nuORF;ENST00000582350.5_1_18:21927721-21957497:-|nuORF	OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant	OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	523.772705078125	2	523.772522	1045.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.342	1	23.094	22.594	23.594	-0.24775								0	0	0	0.029033	1	8167	8167		83.429	20.856	1				2200	3717	1042	1058	2212	2212					0.009548040149411463
AEQQMRHIY	9	Unmodified	_AEQQMRHIY_					0	0	0			REV__ENSG00000185298|ENST00000329214|CCDC137	REV__ENSG00000185298|ENST00000329214|CCDC137	MSMS	HCT116MG_D190212_S2	2	588.2863159179688	2	588.28494	1174.55533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.365	1	31.116	30.616	31.616	-0.24883								0	0	0	0.76575	1	11568	11568		15.847	1.0089	1		+		2201	13840	1043	1059	2213	2213					-0.02496884173979197
AEQQPVQPNP	10	Unmodified	_AEQQPVQPNP_					0	0	0			REV__RAB42|p.V82Cfs*38|1|0.18|ENSG00000188060|chr1:28594034-28594035|-/G|frameshift_variant	REV__RAB42|p.V82Cfs*38|1|0.18|ENSG00000188060|chr1:28594034-28594035|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	554.7622680664062	2	554.275095	1106.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.897	1	15.982	15.482	16.482	0.085423								0	0	0	0.91638	1	5236	5236		12.241	0.74595	1		+		2202	17459	1044	1060	2214	2214					-0.013369369130941777
AEQQRRELA	9	Unmodified	_AEQQRRELA_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	HCT116MG_D190212_S1	1	550.7946166992188	2	550.793986	1099.57342	0.67024	0.00036917	-0.23292	-0.00012829	0.43733	0.00024088	550.7938780633735	17.228	0.20855	17.228	17.046	17.255	0					5	3	2	0	0	0	0.29516	1	5858	5858		31.268	7.2478	1	4976300			2203	1474	1045	1061	2215	2215					0.02761574072383155
AEQQRRELA	9	Unmodified	_AEQQRRELA_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	HCT116MG_D190212_S2	2	550.794189453125	2	550.793986	1099.57342	0.35736	0.00019683	0.10171	5.6022E-05	0.45907	0.00025285	550.7940091412722	17.825	0.46983	17.469	17.336	17.806	-0.35647					17	8	4	0	0	0	0.021544	1	6094	6094		94.909	25.57	1	37270000			2204	1474	1045	1061	2216	2216					0.02761574072383155
AEQRFWKKRRR	11	Unmodified	_AEQRFWKKRRR_					0	0	0		TRABD2A|p.R420W|1|0.33|ENSG00000186854|chr2:84824029-84824029|G/A|missense_variant	TRABD2A|p.R420W|1|0.33|ENSG00000186854|chr2:84824029-84824029|G/A|missense_variant	TRABD2A|p.R420W|1|0.33|ENSG00000186854|chr2:84824029-84824029|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	520.97314453125	3	520.970925	1559.89095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.604	1	20.604	20.104	21.104	0								0	0	0	0.9613	1	7210	7210		0.40827	0.31342	1				2205	18658	1046	1062	2217	2217					0.13339626399420013
AEQRGELAL	9	Unmodified	_AEQRGELAL_					0	0	0		CON__Q5XQN5;CON__P13647;ENSG00000186081|ENST00000252242|KRT5;CON__Q922U2;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q8N1N4-2;ENSG00000170454|ENST00000252245|KRT75;CON__Q8BGZ7;CON__O95678;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;CON__P07744;ENSG00000170423|ENST00000304620|KRT78;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q7RTT2	CON__Q5XQN5	CON__Q5XQN5	MULTI-MSMS	HCT116MG_D190212_S2	2	493.76678466796875	2	493.766906	985.519259	0.69707	0.00034419	-0.083414	-4.1187E-05	0.61365	0.000303	493.7666356710996	35.985	0.36182	35.857	35.709	36.071	-0.12799					10	6	2	0	0	0	0.32155	1	13462	13462		28.495	0	1	25053000		+	2206	579	1047	1063	2218	2218					0.025919819208070294
AEQRGELAL	9	Unmodified	_AEQRGELAL_					0	0	0		CON__Q5XQN5;CON__P13647;ENSG00000186081|ENST00000252242|KRT5;CON__Q922U2;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q8N1N4-2;ENSG00000170454|ENST00000252245|KRT75;CON__Q8BGZ7;CON__O95678;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;CON__P07744;ENSG00000170423|ENST00000304620|KRT78;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q7RTT2	CON__Q5XQN5	CON__Q5XQN5	MULTI-MSMS	HCT116MG_D190212_S3	3	493.7673645019531	2	493.766906	985.519259	-0.13734	-6.7815E-05	0.16892	8.3407E-05	0.031577	1.5592E-05	493.7669707426463	36.144	0.41582	35.844	35.678	36.093	-0.30042					10	7	2	0	0	0	0.029121	1	13341	13341		87.258	0	1	16602000		+	2207	579	1047	1063	2219	2219					0.025919819208070294
AEQRGELAL	9	Unmodified	_AEQRGELAL_					0	0	0		CON__Q5XQN5;CON__P13647;ENSG00000186081|ENST00000252242|KRT5;CON__Q922U2;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q8N1N4-2;ENSG00000170454|ENST00000252245|KRT75;CON__Q8BGZ7;CON__O95678;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;CON__P07744;ENSG00000170423|ENST00000304620|KRT78;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q7RTT2	CON__Q5XQN5	CON__Q5XQN5	MSMS	HCT116MG_D190212_S4	4	493.76678466796875	2	493.766906	985.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.297	1	35.911	35.411	36.411	-0.38558								0	0	0	0.067027	1	13277	13277		65.474	0	1			+	2208	579	1047	1063	2220	2220					0.025919819208070294
AEQRGELAL	9	Unmodified	_AEQRGELAL_					0	0	0		CON__Q5XQN5;CON__P13647;ENSG00000186081|ENST00000252242|KRT5;CON__Q922U2;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__Q8N1N4-2;ENSG00000170454|ENST00000252245|KRT75;CON__Q8BGZ7;CON__O95678;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;CON__P07744;ENSG00000170423|ENST00000304620|KRT78;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q7RTT2	CON__Q5XQN5	CON__Q5XQN5	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	493.766906	985.519259	0.69707	0.00034419	-0.083414	-4.1187E-05	0.61365	0.000303	493.7666356710996	35.985	0.36182	35.857	35.709	36.071	-0.12799	0.0066386	-0.0002265	NaN	87.258	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25053000		+	2209	579	1047	1063							0.025919819208070294
AEQRHRELAA	10	Unmodified	_AEQRHRELAA_					0	0	0		nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;ENST00000587125.1_1_17:58040633-58079710:-|nuORF	nc|ENSG00000108406|Q8IX18-4|DHX40	nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	HCT116MG_D190212_S2	2	591.3070068359375	2	590.81271	1179.61087	0.62636	0.00037006	0.24966	0.0001475	0.87602	0.00051756	590.8129626196717	16.936	0.25995	16.594	16.516	16.776	-0.34183					11	4	4	0	0	0	0.12858	2	5725	5725;5754		77.049	55.512	1	44959000			2210	2159	1048	1064	2221;2222	2221					0.0282466533801653
AEQRHRELAA	10	Unmodified	_AEQRHRELAA_					0	0	0		nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;ENST00000587125.1_1_17:58040633-58079710:-|nuORF	nc|ENSG00000108406|Q8IX18-4|DHX40	nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	HCT116MG_D190212_S2	2	394.2107849121094	3	394.210899	1179.61087	0.08308	3.2751E-05	-0.32245	-0.00012711	-0.23937	-9.4364E-05	394.2107536456071	16.936	0.25995	16.594	16.516	16.776	-0.34183					9	4	3	0	0	0	0.33093	1	5755	5755		47.724	31.587	1	20302000			2211	2159	1048	1064	2223	2223					0.0282466533801653
AEQRKMEAP	9	Unmodified	_AEQRKMEAP_					0	0	0		ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2662963867188	2	530.266216	1058.51788	0.43194	0.00022904	-1.8391	-0.0009752	-1.4071	-0.00074616	530.2655547010227	19.597	0.5194	19.222	18.987	19.506	-0.37503					23	9	4	0	0	0	0.0096585	1	6821	6821		114.19	46.106	1	35971000			2212	7440	1049	1065	2224	2224					-0.009039754396098942
AEQRKMEAP	9	Unmodified	_AEQRKMEAP_					0	0	0		ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	MSMS	HCT116MG_D190212_S2	2	353.4387512207031	3	353.846569	1058.51788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.641	1	19.265	18.765	19.765	-0.37503								0	0	0	0.46109	1	6822	6822		22.658	7.7009	1				2213	7440	1049	1065	2225	2225					-0.009039754396098942
AEQRKMEAP	9	Unmodified	_AEQRKMEAP_					0	0	0		ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2662963867188	2	530.266216	1058.51788	0.45673	0.00024219	-1.3923	-0.00073827	-0.93554	-0.00049609	530.2656669310079	18.469	0.72884	18.545	17.945	18.674	0.076334					24	13	4	0	0	0	0.026272	1	6278	6278		90.135	27.562	1	11578000			2214	7440	1049	1065	2226	2226					-0.009039754396098942
AEQRKMEAP	9	Unmodified	_AEQRKMEAP_					0	0	0		ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	353.84637451171875	3	353.846569	1058.51788	-0.093939	-3.324E-05	-0.25583	-9.0524E-05	-0.34977	-0.00012376	353.84648668818755	18.467	0.36453	18.544	18.413	18.778	0.076334					8	6	2	0	0	0	0.56733	1	6307	6307		8.9762	8.9762	1	1585700			2215	7440	1049	1065	2227	2227					-0.009039754396098942
AEQRKMEAP	9	Unmodified	_AEQRKMEAP_					0	0	0		ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	ENST00000371160.5_1_X:123095175-123095259:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2660522460938	2	530.266216	1058.51788	0.38298	0.00020308	-0.83451	-0.00044251	-0.45152	-0.00023943	530.2657903264703	18.874	0.25988	18.693	18.563	18.823	-0.18052					7	4	2	0	0	0	0.05892	1	6379	6379		70.332	26.474	1	3483500			2216	7440	1049	1065	2228	2228					-0.009039754396098942
AEQRLKAIVA	10	Unmodified	_AEQRLKAIVA_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	HCT116MG_D190212_S2	2	549.835693359375	2	549.835123	1097.65569	0.73022	0.0004015	-0.14759	-8.1151E-05	0.58263	0.00032035	549.8350243400563	29.615	0.25846	29.314	29.185	29.444	-0.30095					8	4	2	0	0	0	0.039761	1	10868	10868		117.84	72.138	1	74284000			2217	1872	1050	1066	2229	2229					0.1107709615132535
AEQRLKAIVA	10	Unmodified	_AEQRLKAIVA_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	HCT116MG_D190212_S2	2	366.8922424316406	3	366.892507	1097.65569	0.11519	4.2264E-05	-0.27617	-0.00010132	-0.16097	-5.906E-05	366.8922149023688	29.615	0.25846	29.314	29.185	29.444	-0.30095					7	4	2	0	0	0	0.70476	1	10882	10882		19.987	9.0879	1	20995000			2218	1872	1050	1066	2230	2230					0.1107709615132535
AEQRLKAIVA	10	Unmodified	_AEQRLKAIVA_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	HCT116MG_D190212_S3	3	366.89227294921875	3	366.892507	1097.65569	0.054527	2.0005E-05	-0.46633	-0.00017109	-0.4118	-0.00015109	366.8923159102923	29.554	0.2088	29.318	29.187	29.396	-0.23655					6	3	2	0	0	0	0.70476	1	10767	10767		19.987	6.4682	1	7324800			2219	1872	1050	1066	2231	2231					0.1107709615132535
AEQRLKAIVA	10	Unmodified	_AEQRLKAIVA_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MSMS	HCT116MG_D190212_S3	3	549.835205078125	2	549.835123	1097.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.572	1	29.335	28.835	29.835	-0.23655								0	0	0	0.17914	1	10748	10748		88.364	51.858	1				2220	1872	1050	1066	2232	2232					0.1107709615132535
AEQRLKAIVA	10	Unmodified	_AEQRLKAIVA_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	HCT116MG_D190212_S4	4	549.8350219726562	2	549.835123	1097.65569	0.54136	0.00029766	-0.15497	-8.5205E-05	0.38639	0.00021245	549.8350333518504	29.772	0.25995	29.423	29.293	29.553	-0.34921					7	4	2	0	0	0	0.70476	1	10771	10771		28.495	14.089	1	8341500			2221	1872	1050	1066	2233	2233					0.1107709615132535
AEQRNRDLQA	10	Unmodified	_AEQRNRDLQA_					0	0	0		ENST00000580738.5_1_17:8339285-8349209:+|nuORF;nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1	ENST00000580738.5_1_17:8339285-8349209:+|nuORF	ENST00000580738.5_1_17:8339285-8349209:+|nuORF	MSMS	HCT116MG_D190212_S2	2	600.8075561523438	2	600.807625	1199.6007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.993	1	17.636	17.136	18.136	-0.35647								0	0	0	0.3888	1	6157	6157		53.317	7.5768	1				2222	4868	1051	1067	2234	2234					0.00888057612769444
AEQRPGSILY	10	Unmodified	_AEQRPGSILY_					0	0	0		FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant;FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant;ENSG00000073910|ENST00000542859|FRY	FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant	FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	566.9120483398438	2	567.301113	1132.58767	0.53768	0.00030503	0.27567	0.00015639	0.81335	0.00046142	567.3010032008206	45.694	0.208	45.383	45.253	45.461	-0.31094					5	3	2	0	0	0	0.87037	1	17091	17091		6.2058	0	1	2781900			2223	1290	1052	1068	2235	2235					0.026682265006684247
AEQRPGVAP	9	Unmodified	_AEQRPGVAP_					0	0	0		ENSG00000179922|ENST00000325351|ZNF784;ENST00000591479.1_1_19:56133119-56135920:-|nuORF	ENSG00000179922|ENST00000325351|ZNF784	ENSG00000179922|ENST00000325351|ZNF784	MULTI-MSMS	HCT116MG_D190212_S2	2	462.74810791015625	2	462.748516	923.482479	0.12563	5.8134E-05	0.20356	9.4196E-05	0.32918	0.00015233	462.74845412739006	21.319	0.36259	20.936	20.703	21.065	-0.38288					11	6	2	0	0	0	0.047849	1	7506	7506		75.761	2.7929	1	13111000			2224	5572	1053	1069	2236	2236					0.01767730094900344
AEQRPGVAP	9	Unmodified	_AEQRPGVAP_					0	0	0		ENSG00000179922|ENST00000325351|ZNF784;ENST00000591479.1_1_19:56133119-56135920:-|nuORF	ENSG00000179922|ENST00000325351|ZNF784	ENSG00000179922|ENST00000325351|ZNF784	MULTI-MSMS	HCT116MG_D190212_S3	3	462.7486877441406	2	462.748516	923.482479	0.24706	0.00011433	0.23662	0.0001095	0.48368	0.00022382	462.74849325385344	20.569	0.52061	20.603	20.298	20.818	0.034473					14	9	2	0	0	0	0.030723	1	7118	7118		85.642	24.04	1	9839100			2225	5572	1053	1069	2237	2237					0.01767730094900344
AEQRPGVAP	9	Unmodified	_AEQRPGVAP_					0	0	0		ENSG00000179922|ENST00000325351|ZNF784;ENST00000591479.1_1_19:56133119-56135920:-|nuORF	ENSG00000179922|ENST00000325351|ZNF784	ENSG00000179922|ENST00000325351|ZNF784	MULTI-MSMS	HCT116MG_D190212_S4	4	462.7485046386719	2	462.748516	923.482479	0.058776	2.7198E-05	0.28587	0.00013228	0.34464	0.00015948	462.7485784546405	20.904	0.46714	20.695	20.448	20.915	-0.20959					15	8	3	0	0	0	0.047849	1	7182	7182		75.761	18.039	1	4062600			2226	5572	1053	1069	2238	2238					0.01767730094900344
AEQRRRRRRRR	11	Unmodified	_AEQRRRRRRRR_					0	0	0			REV__nc|ENSG00000149177|Q12913-3|PTPRJ	REV__nc|ENSG00000149177|Q12913-3|PTPRJ	MSMS	HCT116MG_D190212_S1	1	798.4859008789062	2	798.486145	1594.95774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.69	1	49.69	49.19	50.19	0								0	0	0	0.96157	1	18940	18940		0.26902	0.26902	1		+		2227	17159	1054	1070	2239	2239					0.1840567473389001
AEQRSIYN	8	Unmodified	_AEQRSIYN_					0	0	0		FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant;FAT3|p.P4078Rfs*36|1|0.42|ENSG00000165323|chr11:92883135-92883135|C/-|frameshift_variant;FAT3|p.V4210Cfs*6|1|0.05|ENSG00000165323|chr11:92889212-92889213|-/T|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.N1793Kfs*14|1|0.21|ENSG00000165323|chr11:92798835-92798836|-/A|frameshift_variant;FAT3|p.V1884Sfs*21|1|0.26|ENSG00000165323|chr11:92799110-92799110|G/-|frameshift_variant	FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant	FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	491.2173767089844	2	490.743431	979.472308	0.43641	0.00021416	-0.059941	-2.9415E-05	0.37647	0.00018475	490.74325656632635	24.281	0.20966	24.281	24.15	24.36	0					5	3	2	0	0	0	0.31449	1	8710	8710		10.824	6.4947	1	6215100			2228	4765	1055	1071	2240	2240					-0.01824877630338051
AEQRSPPPP	9	Unmodified	_AEQRSPPPP_					0	0	0		ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	MULTI-MSMS	HCT116MG_D190212_S1	1	489.7542724609375	2	489.753798	977.493044	0.4928	0.00024135	-0.085691	-4.1968E-05	0.40711	0.00019938	489.75373627314644	17.716	0.67787	17.716	17.359	18.037	0					19	12	3	0	0	0	0.047849	1	6062	6062		75.761	24.131	1	5922600			2229	6585	1056	1072	2241	2241					0.0033971274932582674
AEQRSPPPP	9	Unmodified	_AEQRSPPPP_					0	0	0		ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	MULTI-MSMS	HCT116MG_D190212_S2	2	490.255859375	2	489.753798	977.493044	0.069294	3.3937E-05	0.46332	0.00022691	0.53261	0.00026085	489.7539264546712	18.191	1.4604	17.834	17.388	18.849	-0.35647					53	27	4	0	0	0	0.05892	1	6168	6168		70.332	14.155	1	60524000			2230	6585	1056	1072	2242	2242					0.0033971274932582674
AEQSEIIQA	9	Unmodified	_AEQSEIIQA_					0	0	0		nc|ENSG00000182923|Q96MT8-4|CEP63;nc|ENSG00000182923|Q96MT8-3|CEP63;CEP63|p.D497Efs*14|1|0.02|ENSG00000182923|chr3:134558164-134558165|-/GATAAAGAATT|frameshift_variant;nc|ENSG00000182923|Q96MT8-2|CEP63;ENSG00000182923|ENST00000675561|CEP63	nc|ENSG00000182923|Q96MT8-4|CEP63	nc|ENSG00000182923|Q96MT8-4|CEP63	MULTI-MSMS	HCT116MG_D190212_S4	4	494.75091552734375	2	494.750921	987.48729	0.32173	0.00015918	0.132	6.5308E-05	0.45373	0.00022448	494.7508037037931	34.262	0.41542	33.876	33.672	34.087	-0.38558					16	7	3	0	0	0	0.047849	1	12497	12497		75.761	0.83183	1	10782000			2231	410	1057	1073	2243	2243					-0.0069543055299163825
AEQSKHSET	9	Unmodified	_AEQSKHSET_					0	0	0		REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant;nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1694Mfs*4|2|0.16|ENSG00000009413|chr6:111373274-111373274|T/-|frameshift_variant;REV3L|p.I1992Lfs*2|1|0.29|ENSG00000009413|chr6:111367814-111367814|T/-|frameshift_variant	REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant	REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	508.26416015625	2	508.735803	1015.45705	0.34287	0.00017443	-1.9723	-0.0010034	-1.6294	-0.00082896	509.235947665253	29.481	0.26062	29.245	29.031	29.292	-0.23655					5	4	2	0	0	0	0.22393	1	10664	10664		25.399	0	1	1257000			2232	867	1058	1074	2244	2244					-0.05005789218182599
AEQSKVLSA	9	Unmodified	_AEQSKVLSA_					0	0	0		ENST00000587774.1_1_17:73872720-73874251:-|nuORF;ENST00000587339.2_2_17:73870566-73874273:-|nuORF;ENSG00000132481|ENST00000254816|TRIM47	ENST00000587774.1_1_17:73872720-73874251:-|nuORF	ENST00000587774.1_1_17:73872720-73874251:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	466.7560729980469	2	466.756007	931.497461	0.31895	0.00014887	0.04204	1.9623E-05	0.36099	0.0001685	466.7559477014619	24.489	0.2608	24.108	23.979	24.239	-0.38003					11	4	3	0	0	0	0.012343	1	8787	8787		107.56	7.7645	1	29827000			2233	3189	1059	1075	2245	2245					0.02897177172235388
AEQSKVLSA	9	Unmodified	_AEQSKVLSA_					0	0	0		ENST00000587774.1_1_17:73872720-73874251:-|nuORF;ENST00000587339.2_2_17:73870566-73874273:-|nuORF;ENSG00000132481|ENST00000254816|TRIM47	ENST00000587774.1_1_17:73872720-73874251:-|nuORF	ENST00000587774.1_1_17:73872720-73874251:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	466.7557373046875	2	466.756007	931.497461	0.18971	8.8548E-05	-0.023509	-1.0973E-05	0.1662	7.7575E-05	466.75583732052246	23.982	0.41682	23.921	23.739	24.155	-0.061449					16	7	3	0	0	0	0.012343	1	8476	8476		107.56	7.7645	1	30206000			2234	3189	1059	1075	2246	2246					0.02897177172235388
AEQSKVLSA	9	Unmodified	_AEQSKVLSA_					0	0	0		ENST00000587774.1_1_17:73872720-73874251:-|nuORF;ENST00000587339.2_2_17:73870566-73874273:-|nuORF;ENSG00000132481|ENST00000254816|TRIM47	ENST00000587774.1_1_17:73872720-73874251:-|nuORF	ENST00000587774.1_1_17:73872720-73874251:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	466.75579833984375	2	466.756007	931.497461	0.10998	5.1332E-05	0.023313	1.0882E-05	0.13329	6.2213E-05	466.75586150222625	24.253	0.31148	23.995	23.833	24.145	-0.25816					12	5	3	0	0	0	0.011034	1	8527	8527		110.79	21.839	1	10601000			2235	3189	1059	1075	2247	2247					0.02897177172235388
AEQSLKDR	8	Unmodified	_AEQSLKDR_					0	0	0		ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	MSMS	HCT116MG_D190212_S3	3	473.7451171875	2	473.751256	945.487959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.597	1	20.632	20.132	21.132	0.034473								0	0	0	0.25831	1	7133	7133		60.074	1.0214	1				2236	4185	1060	1076	2248	2248					0.01303408886701618
AEQSSHIDV	9	Unmodified	_AEQSSHIDV_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	HCT116MG_D190212_S3	3	493.2322082519531	2	493.232896	984.451239	0.29508	0.00014554	-0.44356	-0.00021878	-0.14848	-7.3233E-05	493.2324880217016	26.69	0.31213	26.541	26.411	26.723	-0.14924					12	5	3	0	0	0	0.026272	1	9593	9593		90.135	22.054	1	8723700			2237	4735	1061	1077	2249	2249					-0.04160887729858587
AEQSTGMAA	9	Unmodified	_AEQSTGMAA_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1;NSD1|p.Q2246H|1|0.16|ENSG00000165671|chr5:177294106-177294106|G/T|missense_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	HCT116MG_D190212_S3	3	865.3726806640625	1	865.372008	864.364732	0.67032	0.00058008	-0.49754	-0.00043055	0.17279	0.00014953	865.3711049337755	20.289	0.31238	20.337	20.259	20.572	0.048107					8	5	2	0	0	0	0.061422	1	7043	7043		69.105	30.954	1	3291000			2238	4788	1062	1078	2250	2250					-0.07287590556063606
AEQSTGMAA	9	Unmodified	_AEQSTGMAA_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1;NSD1|p.Q2246H|1|0.16|ENSG00000165671|chr5:177294106-177294106|G/T|missense_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	865.372008	864.364732	0.81815	0.00070801	0.11558	0.00010002	0.93374	0.00080803	865.3723056583624	20.747	0.2101	20.368	20.236	20.446	-0.37949	0.015093	0.0001422	NaN	69.105	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4061700			2239	4788	1062	1078							-0.07287590556063606
AEQTAAREQA	10	Unmodified	_AEQTAAREQA_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7623901367188	2	537.762352	1073.51015	0.34092	0.00018334	-0.18415	-9.903E-05	0.15677	8.4305E-05	537.7622272950925	15.011	0.31272	14.685	14.55	14.863	-0.32684					9	5	3	0	0	0	0.36201	1	4980	4980		44.945	13.676	1	2429300			2240	5214	1063	1079	2251	2251					-0.023664114355142374
AEQTLSQLP	9	Unmodified	_AEQTLSQLP_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S3	3	493.7614440917969	2	493.761289	985.508025	0.35616	0.00017586	-0.29964	-0.00014795	0.056523	2.7909E-05	493.76119926474195	40.803	0.88599	40.502	40.111	40.997	-0.30161					28	16	2	0	0	0	0.066823	1	15133	15133		66.457	10.28	1	4747900			2241	5313	1064	1080	2252	2252					0.014691598266608707
AEQTLSQLP	9	Unmodified	_AEQTLSQLP_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S4	4	493.76116943359375	2	493.761289	985.508025	0.27582	0.00013619	-0.68599	-0.00033872	-0.41017	-0.00020253	493.76119062567597	40.92	0.63269	40.542	40.083	40.716	-0.37732					19	12	2	0	0	0	0.12205	1	15009	15009		53.833	15.859	1	2599000			2242	5313	1064	1080	2253	2253					0.014691598266608707
AEQTMSHLP	9	Unmodified	_AEQTMSHLP_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MSMS	HCT116MG_D190212_S1	1	507.23974609375	2	507.239667	1012.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.085	1	32.085	31.585	32.585	0								0	0	0	0.08589	1	11828	11828		60.074	29.437	1				2243	5312	1065	1081	2254	2254					-0.04095353222260201
AEQTMSHLP	9	Unmodified	_AEQTMSHLP_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	HCT116MG_D190212_S2	2	507.2394104003906	2	507.239667	1012.46478	0.42672	0.00021645	-0.093102	-4.7225E-05	0.33361	0.00016922	507.2395741703689	32.156	1.1425	31.926	31.425	32.567	-0.23009					37	21	2	0	0	0	0.041798	2	11830	11830;12111		78.728	20.05	1	15254000			2244	5312	1065	1081	2255;2256	2255					-0.04095353222260201
AEQTMSHLP	9	Unmodified	_AEQTMSHLP_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	HCT116MG_D190212_S3	3	507.2400817871094	2	507.239667	1012.46478	0.21027	0.00010666	-0.28356	-0.00014383	-0.073291	-3.7176E-05	507.23963144732403	32.128	1.0411	31.85	31.578	32.619	-0.27841					48	19	3	0	0	0	0.023778	2	11732	11732;11965		92.653	36.841	1	14374000			2245	5312	1065	1081	2257;2258	2257					-0.04095353222260201
AEQTMSHLP	9	Unmodified	_AEQTMSHLP_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	HCT116MG_D190212_S4	4	507.239501953125	2	507.239667	1012.46478	0.10839	5.4981E-05	-0.25265	-0.00012815	-0.14425	-7.3171E-05	507.2394466630132	32.402	0.93433	32.023	31.586	32.52	-0.37924					39	17	3	0	0	0	0.061422	1	11749	11749		69.105	31.131	1	4892200			2246	5312	1065	1081	2259	2259					-0.04095353222260201
AEQTMSHLP	9	Oxidation (M)	_AEQTM(Oxidation (M))SHLP_		AEQTM(1)SHLP		AEQTM(52)SHLP	0	0	1		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	HCT116MG_D190212_S3	3	515.23681640625	2	515.237124	1028.45969	0.29906	0.00015409	0.019626	1.0112E-05	0.31869	0.0001642	515.2370446047187	24.969	0.88515	24.864	24.476	25.361	-0.1051					21	16	2	0	0	0	0.13316	1	8862	8862		51.63	20.993	1	2735300			2247	5312	1065	1082	2260	2260		117			-0.05339657084891769
AEQTMSHLP	9	Oxidation (M)	_AEQTM(Oxidation (M))SHLP_					0	0	1		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MATCH	HCT116MG_D190212_S2	2		2	515.237124	1028.45969	0.30025	0.0001547	0.92545	0.00047683	1.2257	0.00063153	515.2377449057245	25.269	0.20809	24.894	24.712	24.92	-0.37521	0.01529	0.0004419	NaN	51.63	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5268100			2248	5312	1065	1082				117			-0.05339657084891769
AEQTPSRPP	9	Unmodified	_AEQTPSRPP_					0	0	0		ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L	ENSG00000186174|ENST00000683865|BCL9L	ENSG00000186174|ENST00000683865|BCL9L	MULTI-MSMS	HCT116MG_D190212_S3	3	491.751953125	2	491.751256	981.487959	0.14537	7.1488E-05	0.30748	0.0001512	0.45285	0.00022269	491.75149058235183	18.363	1.0411	18.439	18.049	19.09	0.076334					29	19	2	0	0	0	0.045679	1	6238	6238		76.825	22.992	1	7087900			2249	5871	1066	1083	2261	2261					-0.0035259111327832215
AEQTPSRPP	9	Unmodified	_AEQTPSRPP_					0	0	0		ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L	ENSG00000186174|ENST00000683865|BCL9L	ENSG00000186174|ENST00000683865|BCL9L	MULTI-MSMS	HCT116MG_D190212_S4	4	491.7514953613281	2	491.751256	981.487959	0.052013	2.5578E-05	0.50352	0.00024761	0.55553	0.00027318	491.75141715413184	18.645	0.7278	18.464	18.147	18.875	-0.18051					25	13	3	0	0	0	0.094138	1	6262	6262		59.368	13.669	1	3042200			2250	5871	1066	1083	2262	2262					-0.0035259111327832215
AEQTRAVLA	9	Unmodified	_AEQTRAVLA_					0	0	0		nc|ENSG00000111696|Q86UY8-2|NT5DC3;ENSG00000111696|ENST00000392876|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	MULTI-MSMS	HCT116MG_D190212_S2	2	479.76947021484375	2	479.769448	957.524344	0.34519	0.00016561	0.3078	0.00014767	0.65298	0.00031328	479.76949347997896	26.257	0.20678	25.895	25.766	25.972	-0.36164					5	3	2	0	0	0	0.32155	1	9519	9519		28.495	6.9575	1	9775300			2251	2310	1067	1084	2263	2263					0.043882857834205424
AEQTRAVLA	9	Unmodified	_AEQTRAVLA_					0	0	0		nc|ENSG00000111696|Q86UY8-2|NT5DC3;ENSG00000111696|ENST00000392876|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	MULTI-MATCH	HCT116MG_D190212_S3	3		2	479.769448	957.524344	0.33719	0.00016177	0.8589	0.00041207	1.1961	0.00057385	479.7700475748228	25.813	0.15644	25.686	25.598	25.755	-0.12795	-0.10483	0.00035851	NaN	28.495	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3667200			2252	2310	1067	1084							0.043882857834205424
AEQVSHHPP	9	Unmodified	_AEQVSHHPP_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000144909|ENST00000296220|OSBPL11;OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant;ENST00000531819.5_1_1:52237836-52249732:+|nuORF;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9	ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000117859|Q96SU4-7|OSBPL9	ENSG00000091039|ENST00000261183|OSBPL8	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2440185546875	2	501.243598	1000.47264	0.37595	0.00018844	0.23856	0.00011958	0.61451	0.00030802	501.243576712604	15.77	1.2495	15.77	15.432	16.681	0					29	23	3	0	0	0	0.23138	1	5280	5280		37.974	11.09	1	7039900			2253	1551;2589	1068	1085	2264	2264					-0.027574579104793884
AEQVSHHPP	9	Unmodified	_AEQVSHHPP_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000144909|ENST00000296220|OSBPL11;OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant;ENST00000531819.5_1_1:52237836-52249732:+|nuORF;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9	ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000117859|Q96SU4-7|OSBPL9	ENSG00000091039|ENST00000261183|OSBPL8	MULTI-MSMS	HCT116MG_D190212_S2	2	501.24383544921875	2	501.243598	1000.47264	0.36276	0.00018183	0.1429	7.1628E-05	0.50566	0.00025346	501.24359041341177	16.154	1.7203	15.82	15.168	16.888	-0.33451					72	32	3	0	0	0	0.0082095	3	5418	5184;5418;5658		117.76	62.258	1	47577000			2254	1551;2589	1068	1085	2265;2266;2267	2266					-0.027574579104793884
AEQVSHHPP	9	Unmodified	_AEQVSHHPP_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000144909|ENST00000296220|OSBPL11;OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant;ENST00000531819.5_1_1:52237836-52249732:+|nuORF;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9	ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000117859|Q96SU4-7|OSBPL9	ENSG00000091039|ENST00000261183|OSBPL8	MULTI-MSMS	HCT116MG_D190212_S3	3	501.74566650390625	2	501.243598	1000.47264	0.49165	0.00024644	-0.080453	-4.0326E-05	0.4112	0.00020611	501.24340936643233	14.669	1.3928	14.749	14.422	15.815	0.079683					34	26	3	0	0	0	0.0063854	2	4753	4753;5005		125.53	56.424	1	3873500			2255	1551;2589	1068	1085	2268;2269	2268					-0.027574579104793884
AEQVSHHPP	9	Unmodified	_AEQVSHHPP_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;ENSG00000144645|ENST00000396556|OSBPL10;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000144909|ENST00000296220|OSBPL11;OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant;ENST00000531819.5_1_1:52237836-52249732:+|nuORF;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9	ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000117859|Q96SU4-7|OSBPL9	ENSG00000091039|ENST00000261183|OSBPL8	MSMS	HCT116MG_D190212_S4	4	501.2437438964844	2	501.243598	1000.47264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.831	1	14.67	14.17	15.17	-0.16089								0	0	0	0.38321	1	4731	4731		34.402	19.563	1				2256	1551;2589	1068	1085	2270	2270					-0.027574579104793884
AEQVTGGIKA	10	Unmodified	_AEQVTGGIKA_					0	0	0		ENSG00000079462|ENST00000262890|PAFAH1B3	ENSG00000079462|ENST00000262890|PAFAH1B3	ENSG00000079462|ENST00000262890|PAFAH1B3	MSMS	HCT116MG_D190212_S3	3	487.2685241699219	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.051	1	25.923	25.423	26.423	-0.12795								0	0	0	0.75242	1	9329	9329		34.932	8.6639	1				2257	1383	1069	1086	2271	2271					0.03664866063570571
AEQVTGGIKA	10	Unmodified	_AEQVTGGIKA_					0	0	0		ENSG00000079462|ENST00000262890|PAFAH1B3	ENSG00000079462|ENST00000262890|PAFAH1B3	ENSG00000079462|ENST00000262890|PAFAH1B3	MSMS	HCT116MG_D190212_S4	4	487.2693786621094	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.284	1	25.983	25.483	26.483	-0.30087								0	0	0	0.83884	1	9356	9356		23.79	4.5328	1				2258	1383	1069	1086	2272	2272					0.03664866063570571
AEQVVARVA	9	Unmodified	_AEQVVARVA_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MSMS	HCT116MG_D190212_S3	3	471.7719421386719	2	471.771991	941.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.419	1	26.269	25.769	26.769	-0.14924								0	0	0	0.34992	1	9477	9477		36.506	10.238	1				2259	5027	1070	1087	2273	2273					0.05632589646040742
AEQWKTNEA	9	Unmodified	_AEQWKTNEA_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;ENST00000550657.1_1_12:93804504-93804684:-|nuORF	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-MSMS	HCT116MG_D190212_S2	2	538.7540283203125	2	538.753995	1075.49344	0.63195	0.00034047	-0.27564	-0.0001485	0.35631	0.00019196	538.7537936876056	24.436	0.62389	24.056	23.563	24.187	-0.38003					18	11	3	0	0	0	0.056114	1	8632	8632		71.708	20.078	1	45479000			2260	5478	1071	1088	2274	2274					-0.041289123214710344
AEQWKTNEA	9	Unmodified	_AEQWKTNEA_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;ENST00000550657.1_1_12:93804504-93804684:-|nuORF	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-MSMS	HCT116MG_D190212_S3	3	538.7542114257812	2	538.753995	1075.49344	0.44135	0.00023778	-0.077174	-4.1578E-05	0.36417	0.0001962	538.7539515459017	23.617	0.72955	23.578	23.396	24.125	-0.03968					21	13	3	0	0	0	0.031831	1	8369	8369		84.522	29.749	1	20031000			2261	5478	1071	1088	2275	2275					-0.041289123214710344
AEQWKTNEA	9	Unmodified	_AEQWKTNEA_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;ENST00000550657.1_1_12:93804504-93804684:-|nuORF	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-MSMS	HCT116MG_D190212_S4	4	538.75390625	2	538.753995	1075.49344	0.48496	0.00026127	0.047692	2.5694E-05	0.53265	0.00028697	538.7539429924793	23.909	0.312	23.651	23.521	23.833	-0.25816					11	5	3	0	0	0	0.028026	1	8399	8399		88.364	34.96	1	8776100			2262	5478	1071	1088	2276	2276					-0.041289123214710344
AEQYSTVPKH	10	Unmodified	_AEQYSTVPKH_					0	0	0			REV__ENSG00000166169|ENST00000370162|POLL	REV__ENSG00000166169|ENST00000370162|POLL	MULTI-MSMS	HCT116MG_D190212_S2	2	580.2896728515625	2	580.290745	1158.56694	-0.0099739	-5.7877E-06	-3.517	-0.0020409	-3.5269	-0.0020466	580.2890670141937	18.623	0.41619	18.26	18.113	18.529	-0.36325					9	7	2	0	0	0	0.8392	1	6442	6442		8.7454	0.58988	1	6923300	+		2263	13094	1072	1089	2277	2277					-0.006003638790161858
AEQYSTVPKH	10	Unmodified	_AEQYSTVPKH_					0	0	0			REV__ENSG00000166169|ENST00000370162|POLL	REV__ENSG00000166169|ENST00000370162|POLL	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	580.290745	1158.56694	-0.0099739	-5.7877E-06	-3.517	-0.0020409	-3.5269	-0.0020466	580.2890670141937	18.623	0.41619	18.26	18.113	18.529	-0.36325	0	0	NaN	8.7454	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6923300	+		2264	13094	1072	1089							-0.006003638790161858
AERAEQLD	8	Unmodified	_AERAEQLD_					0	0	0			REV__ENST00000432151.5_1_22:30070843-30090795:+|nuORF	REV__ENST00000432151.5_1_22:30070843-30090795:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	467.3593444824219	2	466.227613	930.440674	0.15233	7.102E-05	0.15278	7.1232E-05	0.30511	0.00014225	466.2276148442534	16.363	0.62583	16.022	15.786	16.412	-0.34183					22	11	3	0	0	0	0.69862	1	5515	5515		23.148	2.6948	1	28809000	+		2265	13891	1073	1090	2278	2278					-0.027328703842840696
AERAEWIEA	9	Unmodified	_AERAEWIEA_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7633056640625	2	537.764363	1073.51417	0.52156	0.00028047	-0.83942	-0.00045141	-0.31786	-0.00017093	537.7635472928915	38.967	0.46807	38.883	38.544	39.012	-0.084618					12	8	2	0	0	0	0.051033	1	14660	14660		74.2	36.024	1	42681000			2266	1717	1074	1091	2279	2279					-0.019643219418185254
AERAEWIEA	9	Unmodified	_AERAEWIEA_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7642211914062	2	537.764363	1073.51417	0.47343	0.00025459	-0.54141	-0.00029115	-0.067978	-3.6556E-05	537.7638570152902	39.196	0.36973	38.895	38.664	39.034	-0.30137					18	6	4	0	0	0	0.085458	1	14551	14551		61.09	21.14	1	24985000			2267	1717	1074	1091	2280	2280					-0.019643219418185254
AERAEWIEA	9	Unmodified	_AERAEWIEA_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MULTI-MSMS	HCT116MG_D190212_S4	4	537.7642822265625	2	537.764363	1073.51417	0.47568	0.00025581	-0.34011	-0.0001829	0.13557	7.2907E-05	537.7641074993196	39.349	0.28461	38.968	38.815	39.1	-0.38055					10	6	2	0	0	0	0.23993	1	14450	14450		37.075	15.538	1	8605800			2268	1717	1074	1091	2281	2281					-0.019643219418185254
AERAFAPQ	8	Unmodified	_AERAFAPQ_					0	0	0			REV__ENST00000302165.4_1_19:46389205-46389253:-|nuORF	REV__ENST00000302165.4_1_19:46389205-46389253:-|nuORF	MSMS	HCT116MG_D190212_S3	3	445.2292785644531	2	445.229959	888.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.833	1	21.834	21.334	22.334	0.00074577								0	0	0	0.69969	1	7628	7628		30.637	0	1		+		2269	14795	1075	1092	2282	2282					-0.0033194145087236393
AERAGAVRA	9	Unmodified	_AERAGAVRA_					0	0	0		ENSG00000116014|ENST00000234371|KISS1R	ENSG00000116014|ENST00000234371|KISS1R	ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	HCT116MG_D190212_S2	2	450.75390625	2	450.754133	899.493713	0.069612	3.1378E-05	-0.14922	-6.726E-05	-0.079604	-3.5882E-05	450.7539535007166	16.259	0.26137	15.924	15.794	16.055	-0.33451					7	4	2	0	0	0	0.1535	1	5468	5468		47.594	9.4188	1	4600000			2270	2497	1076	1093	2283	2283					0.03994552189033129
AERAGAVRA	9	Unmodified	_AERAGAVRA_					0	0	0		ENSG00000116014|ENST00000234371|KISS1R	ENSG00000116014|ENST00000234371|KISS1R	ENSG00000116014|ENST00000234371|KISS1R	MULTI-MATCH	HCT116MG_D190212_S1	1		2	450.754133	899.493713	0.075872	3.4199E-05	0.1029	4.6382E-05	0.17877	8.0582E-05	450.7543012700623	15.889	0.15615	15.889	15.796	15.952	0	-0.01769	0.00021069	NaN	47.594	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1201400			2271	2497	1076	1093							0.03994552189033129
AERASGVSA	9	Unmodified	_AERASGVSA_					0	0	0		NELFB|p.L128Tfs*7|1|0.42|ENSG00000188986|chr9:137256832-137256833|-/A|frameshift_variant;ENSG00000188986|ENST00000343053|NELFB	NELFB|p.L128Tfs*7|1|0.42|ENSG00000188986|chr9:137256832-137256833|-/A|frameshift_variant	NELFB|p.L128Tfs*7|1|0.42|ENSG00000188986|chr9:137256832-137256833|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	424.21685791015625	2	424.217049	846.419545	0.10486	4.4485E-05	-0.14544	-6.1699E-05	-0.040578	-1.7214E-05	424.21688692382776	17.107	0.26048	16.758	16.613	16.873	-0.34933					7	4	2	0	0	0	0.24534	1	5825	5825		36.506	7.4246	1	6902500			2272	6010	1077	1094	2284	2284					-0.009808356931443996
AERDALNIET	10	Unmodified	_AERDALNIET_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S1	1	566.2855834960938	2	566.28566	1130.55677	0.42086	0.00023833	0.036223	2.0512E-05	0.45709	0.00025884	566.285653846371	34.519	0.31198	34.519	34.337	34.649	0					10	5	2	0	0	0	0.016452	1	12798	12798		128.57	28.774	1	66067000			2273	5683	1078	1095	2285	2285					-0.003289716042445434
AERDALNIET	10	Unmodified	_AERDALNIET_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S2	2	566.2862548828125	2	566.28566	1130.55677	0.66833	0.00037846	0.13347	7.5582E-05	0.8018	0.00045405	566.2856358245225	34.632	0.41309	34.474	34.296	34.709	-0.15834					23	7	4	0	0	0	0.025294	1	12876	12876		110.79	28.903	1	354210000			2274	5683	1078	1095	2286	2286					-0.003289716042445434
AERDALNIET	10	Unmodified	_AERDALNIET_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S2	2	1131.5660400390625	1	1131.56404	1130.55677	0.82296	0.00093123	-0.12365	-0.00013992	0.69931	0.00079131	1131.5639851061092	34.616	0.2576	34.458	34.296	34.554	-0.15834					9	4	3	0	0	0	0.017977	1	12897	12897		124.95	67.704	1	31262000			2275	5683	1078	1095	2287	2287					-0.003289716042445434
AERDALNIET	10	Unmodified	_AERDALNIET_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S3	3	566.2858276367188	2	566.28566	1130.55677	0.25078	0.00014201	0.037178	2.1053E-05	0.28796	0.00016307	566.2856317927806	34.815	0.4675	34.518	34.336	34.803	-0.29707					22	8	4	0	0	0	0.011728	1	12829	12829		139.78	39.983	1	108370000			2276	5683	1078	1095	2288	2288					-0.003289716042445434
AERDALNIET	10	Unmodified	_AERDALNIET_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S3	3	1131.565185546875	1	1131.56404	1130.55677	0.2337	0.00026445	0.14185	0.00016052	0.37556	0.00042497	1131.5647254167384	34.815	0.26027	34.518	34.388	34.648	-0.29707					7	4	2	0	0	0	0.027082	1	12855	12855		107.56	50.314	1	5115300			2277	5683	1078	1095	2289	2289					-0.003289716042445434
AERDALNIET	10	Unmodified	_AERDALNIET_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S4	4	566.2853393554688	2	566.28566	1130.55677	0.3945	0.0002234	0.10775	6.1016E-05	0.50225	0.00028442	566.2855864776633	34.948	0.30685	34.562	34.391	34.698	-0.38606					12	5	3	0	0	0	0.021392	1	12770	12770		117.84	28.884	1	20265000			2278	5683	1078	1095	2290	2290					-0.003289716042445434
AERDALNIETA	11	Unmodified	_AERDALNIETA_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S2	2	601.8037109375	2	601.804217	1201.59388	0.76634	0.00046119	-0.046668	-2.8085E-05	0.71968	0.0004331	601.8039604464751	34.979	0.31062	34.82	34.657	34.968	-0.15834					9	5	2	0	0	0	0.55234	1	13034	13034		40.725	19.188	1	41303000			2279	5683	1079	1096	2291	2291					0.001146999415141181
AERDALNIETA	11	Unmodified	_AERDALNIETA_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S3	3	601.8040771484375	2	601.804217	1201.59388	0.74044	0.0004456	-0.03644	-2.193E-05	0.704	0.00042367	601.8039438703505	35.23	0.31105	34.931	34.75	35.061	-0.29922					15	5	4	0	0	0	0.012683	1	12980	12980		135.72	66.614	1	30666000			2280	5683	1079	1096	2292	2292					0.001146999415141181
AERDALNIETA	11	Unmodified	_AERDALNIETA_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S4	4	601.8043212890625	2	601.804217	1201.59388	1.3396	0.00080619	-0.58995	-0.00035503	0.74967	0.00045115	601.803816061813	35.313	0.20725	34.927	34.75	34.957	-0.38606					7	3	3	0	0	0	0.083997	1	12935	12935		92.201	40.571	1	7914200			2281	5683	1079	1096	2293	2293					0.001146999415141181
AERDALNIETA	11	Unmodified	_AERDALNIETA_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	601.804217	1201.59388	0.5904	0.0003553	1.0496	0.00063168	1.64	0.00098698	601.8044278246132	34.935	0.20827	34.935	34.804	35.013	0	0.031489	0.0014259	NaN	135.72	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7307300			2282	5683	1079	1096							0.001146999415141181
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2643432617188	2	530.26453	1058.51451	0.43636	0.00023139	0.23358	0.00012386	0.66994	0.00035525	530.2645844448933	28.05	0.46862	28.05	27.852	28.321	0					19	8	4	0	0	0	0.0015154	2	10200	10200;10236		189.73	124.26	1	99804000			2283	4018	1080	1097	2294;2295	2294					-0.012409022219571852
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S1	1	353.8453369140625	3	353.845446	1058.51451	0.043409	1.536E-05	0.21014	7.4357E-05	0.25355	8.9717E-05	353.84539126656597	28.068	0.41649	28.068	27.904	28.321	0					18	7	4	0	0	0	0.029121	1	10204	10204		72.59	44.356	1	53383000			2284	4018	1080	1097	2296	2296					-0.012409022219571852
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2646484375	2	530.26453	1058.51451	0.40692	0.00021578	-0.24144	-0.00012802	0.16549	8.7753E-05	530.2643411260224	28.54	0.46093	28.21	28.029	28.49	-0.32987					22	8	4	0	0	0	0.0035894	1	10399	10399		176.43	113.85	1	587680000			2285	4018	1080	1097	2297	2297					-0.012409022219571852
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S2	2	353.8453674316406	3	353.845446	1058.51451	-0.16867	-5.9682E-05	-0.010397	-3.6788E-06	-0.17906	-6.3361E-05	353.84531748040354	28.554	0.35918	28.224	28.029	28.389	-0.32987					17	6	4	0	0	0	0.022505	1	10402	10402		78.61	49.173	1	223190000			2286	4018	1080	1097	2298	2298					-0.012409022219571852
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S2	2	1059.5218505859375	1	1059.52178	1058.51451	0.56032	0.00059367	5.9766E-05	6.3323E-08	0.56038	0.00059373	1059.5217096842355	28.561	0.20582	28.231	28.081	28.287	-0.32987					5	3	2	0	0	0	0.0015154	1	10440	10440		189.73	106.3	1	24523000			2287	4018	1080	1097	2299	2299					-0.012409022219571852
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S3	3	353.84490966796875	3	353.845446	1058.51451	-0.013753	-4.8665E-06	0.082503	2.9193E-05	0.06875	2.4327E-05	353.84536601937214	28.461	0.88608	28.255	27.759	28.645	-0.20593					34	16	5	0	0	0	0.022505	1	10299	10299		78.61	47.907	1	91688000			2288	4018	1080	1097	2300	2300					-0.012409022219571852
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2647094726562	2	530.26453	1058.51451	0.54499	0.00028899	-0.17044	-9.0377E-05	0.37455	0.00019861	530.2644381297422	28.461	0.46886	28.255	28.072	28.541	-0.20593					26	8	4	0	0	0	0.0034669	1	10301	10301		163.69	102.08	1	164180000			2289	4018	1080	1097	2301	2301					-0.012409022219571852
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2642822265625	2	530.26453	1058.51451	0.4167	0.00022096	-0.18384	-9.7483E-05	0.23286	0.00012348	530.2644308574877	28.681	0.41516	28.34	28.159	28.574	-0.34059					19	7	4	0	0	0	0.0047539	1	10312	10312		139.78	78.18	1	55973000			2290	4018	1080	1097	2302	2302					-0.012409022219571852
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MSMS	HCT116MG_D190212_S4	4	353.8454284667969	3	353.845446	1058.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.681	1	28.341	27.841	28.841	-0.34059								0	0	0	0.04525	1	10325	10325		59.013	32.992	1				2291	4018	1080	1097	2303	2303					-0.012409022219571852
AERDFIHTA	9	Unmodified	_AERDFIHTA_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1059.52178	1058.51451	0.88771	0.00094055	-0.44414	-0.00047058	0.44357	0.00046997	1060.5237925258025	28.087	0.15622	28.087	27.956	28.113	0	-0.072118	-0.00044951	NaN	189.73	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2567700			2292	4018	1080	1097							-0.012409022219571852
AERDGVKVP	9	Unmodified	_AERDGVKVP_					0	0	0		ENST00000593036.4_1_19:541247-541549:+|nuORF;ENSG00000099804|ENST00000215574|CDC34	ENST00000593036.4_1_19:541247-541549:+|nuORF	ENST00000593036.4_1_19:541247-541549:+|nuORF	MSMS	HCT116MG_D190212_S1	1	485.7694396972656	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.349	1	24.349	23.849	24.849	0								0	0	0	0.27628	1	8712	8712		41.84	11.203	1				2293	1640	1081	1098	2304	2304					0.03836285783427229
AERDGVKVP	9	Unmodified	_AERDGVKVP_					0	0	0		ENST00000593036.4_1_19:541247-541549:+|nuORF;ENSG00000099804|ENST00000215574|CDC34	ENST00000593036.4_1_19:541247-541549:+|nuORF	ENST00000593036.4_1_19:541247-541549:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	485.76971435546875	2	485.769448	969.524344	0.22271	0.00010818	0.1414	6.8689E-05	0.36411	0.00017687	485.76946625631257	24.771	0.62399	24.393	24.241	24.865	-0.37803					27	11	3	0	0	0	0.040027	1	8892	8892		79.596	27.328	1	46494000			2294	1640	1081	1098	2305	2305					0.03836285783427229
AERDGVKVP	9	Unmodified	_AERDGVKVP_					0	0	0		ENST00000593036.4_1_19:541247-541549:+|nuORF;ENSG00000099804|ENST00000215574|CDC34	ENST00000593036.4_1_19:541247-541549:+|nuORF	ENST00000593036.4_1_19:541247-541549:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	485.76959228515625	2	485.769448	969.524344	0.066807	3.2453E-05	0.033558	1.6302E-05	0.10036	4.8754E-05	485.76939807212307	24.243	0.52044	24.181	24.051	24.572	-0.061449					20	9	3	0	0	0	0.14362	1	8605	8605		49.554	5.696	1	11044000			2295	1640	1081	1098	2306	2306					0.03836285783427229
AERDLQHHEA	10	Unmodified	_AERDLQHHEA_					0	0	0		ENSG00000103021|ENST00000219299|CCDC113	ENSG00000103021|ENST00000219299|CCDC113	ENSG00000103021|ENST00000219299|CCDC113	MULTI-MSMS	HCT116MG_D190212_S2	2	603.287109375	2	603.286525	1204.5585	0.56801	0.00034267	0.27079	0.00016336	0.8388	0.00050603	603.7882268781071	15.111	0.26068	14.784	14.654	14.915	-0.32684					5	4	2	0	0	0	0.58449	1	5006	5006		32.898	22.098	1	2235200			2296	1868	1082	1099	2307	2307					-0.035599177956328276
AERDLRDIEA	10	Unmodified	_AERDLRDIEA_					0	0	0		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	594.3048095703125	2	594.304384	1186.59421	0.70979	0.00042183	-0.62989	-0.00037435	0.079901	4.7485E-05	594.3041840542296	29.101	0.26018	28.879	28.733	28.994	-0.22195					6	4	2	0	0	0	0.13746	1	10579	10579		66.683	20.661	1	8454300			2297	1144	1083	1100	2308	2308					0.008381196613981956
AERDLRDIGA	10	Unmodified	_AERDLRDIGA_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MULTI-MSMS	HCT116MG_D190212_S1	1	558.2941284179688	2	558.293819	1114.57309	0.46206	0.00025796	-0.43678	-0.00024385	0.025279	1.4113E-05	558.2936679207046	27.826	0.26039	27.826	27.696	27.956	0					8	4	3	0	0	0	0.014915	1	10126	10126		132.22	64.382	1	13185000			2298	3641	1084	1101	2309	2309					0.02038154352521815
AERDLRDIGA	10	Unmodified	_AERDLRDIGA_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MULTI-MSMS	HCT116MG_D190212_S1	1	372.5314636230469	3	372.531638	1114.57309	-0.070228	-2.6162E-05	-0.57035	-0.00021247	-0.64058	-0.00023864	372.5314605017448	27.878	0.26039	27.878	27.696	27.956	0					7	4	2	0	0	0	0.63124	1	10143	10143		28.181	15.325	1	5848600			2299	3641	1084	1101	2310	2310					0.02038154352521815
AERDLRDIGA	10	Unmodified	_AERDLRDIGA_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2939453125	2	558.293819	1114.57309	0.38828	0.00021678	-0.09539	-5.3256E-05	0.29289	0.00016352	558.2937077788176	28.23	0.25938	27.9	27.77	28.029	-0.32987					10	4	3	0	0	0	0.014915	1	10291	10291		132.22	67.293	1	118850000			2300	3641	1084	1101	2311	2311					0.02038154352521815
AERDLRDIGA	10	Unmodified	_AERDLRDIGA_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MSMS	HCT116MG_D190212_S2	2	372.5312805175781	3	372.531638	1114.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.265	1	27.936	27.436	28.436	-0.32987								0	0	0	0.33597	1	10303	10303		45.004	11.372	1				2301	3641	1084	1101	2312	2312					0.02038154352521815
AERDLRDIGA	10	Unmodified	_AERDLRDIGA_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MULTI-MSMS	HCT116MG_D190212_S3	3	558.2940063476562	2	558.293819	1114.57309	0.24694	0.00013787	0.30565	0.00017064	0.55259	0.00030851	558.2938063842369	28.2	0.31337	27.994	27.811	28.125	-0.20593					11	5	3	0	0	0	0.019252	1	10198	10198		121.93	60.328	1	21185000			2302	3641	1084	1101	2313	2313					0.02038154352521815
AERDLRDIGA	10	Unmodified	_AERDLRDIGA_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MULTI-MSMS	HCT116MG_D190212_S3	3	372.5313720703125	3	372.531638	1114.57309	-0.22654	-8.4392E-05	-0.026572	-9.8989E-06	-0.25311	-9.4291E-05	372.53153991242453	28.2	0.26116	27.994	27.811	28.072	-0.20593					7	4	2	0	0	0	0.48296	1	10200	10200		32.518	9.5024	1	10439000			2303	3641	1084	1101	2314	2314					0.02038154352521815
AERDLRDIGA	10	Unmodified	_AERDLRDIGA_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MULTI-MSMS	HCT116MG_D190212_S4	4	558.2942504882812	2	558.293819	1114.57309	0.24406	0.00013626	0.5644	0.0003151	0.80846	0.00045136	558.2943048862106	28.369	0.31237	28.038	27.856	28.168	-0.33138					7	5	2	0	0	0	0.69766	1	10225	10225		20.581	1.3239	1	3721300			2304	3641	1084	1101	2315	2315					0.02038154352521815
AERDLRDIGA	10	Unmodified	_AERDLRDIGA_					0	0	0		nc|ENSG00000139697|A3KN83-4|SBNO1;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-4|SBNO1	MULTI-MATCH	HCT116MG_D190212_S4	4		3	372.531638	1114.57309	-0.027076	-1.0086E-05	-0.7196	-0.00026807	-0.74667	-0.00027816	372.53139332870853	28.357	0.20829	28.026	27.908	28.116	-0.33138	0.05965	-0.00039377	NaN	32.518	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2135200			2305	3641	1084	1101							0.02038154352521815
AERDRFAVA	9	Unmodified	_AERDRFAVA_					0	0	0		ENST00000454225.1_1_X:71525242-71526668:-|nuORF	ENST00000454225.1_1_X:71525242-71526668:-|nuORF	ENST00000454225.1_1_X:71525242-71526668:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	517.7728881835938	2	517.772522	1033.53049	0.36991	0.00019153	0.24146	0.00012502	0.61137	0.00031655	517.7726474742894	27.152	0.26037	27.152	27.022	27.282	0					5	4	2	0	0	0	0.21258	1	9852	9852		39.95	1.335	1	6094500			2306	8009	1085	1102	2316	2316					0.01506804014957197
AERDSGLGA	9	Unmodified	_AERDSGLGA_					0	0	0		ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	MULTI-MSMS	HCT116MG_D190212_S3	3	438.21466064453125	2	438.214506	874.414459	0.15917	6.975E-05	0.2108	9.2376E-05	0.36997	0.00016213	438.2144865743277	19.612	0.20823	19.672	19.594	19.802	0.05983					5	3	2	0	0	0	0.35842	1	6765	6765		24.991	4.5373	1	2961500			2307	6069	1086	1103	2317	2317					-0.027771395557579126
AERDYLDLTA	10	Unmodified	_AERDYLDLTA_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENST00000438277.5_1_2:128855105-128928859:+|nuORF	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	HCT116MG_D190212_S2	2	583.7880249023438	2	583.788035	1165.56152	0.49223	0.00028736	-0.071819	-4.1927E-05	0.42041	0.00024543	583.7879156625478	43.502	0.361	43.429	43.2	43.561	-0.073372					16	6	3	0	0	0	0.079802	1	16500	16500		78.06	44.616	1	59281000			2308	3428	1087	1104	2318	2318					-0.014640874614769928
AERDYLDLTA	10	Unmodified	_AERDYLDLTA_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENST00000438277.5_1_2:128855105-128928859:+|nuORF	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	HCT116MG_D190212_S3	3	584.2901611328125	2	583.788035	1165.56152	0.5049	0.00029475	0.05528	3.2272E-05	0.56018	0.00032702	583.7879578855236	43.728	0.313	43.422	43.292	43.605	-0.30616					15	5	4	0	0	0	0.049927	1	16330	16330		87.258	23.298	1	25319000			2309	3428	1087	1104	2319	2319					-0.014640874614769928
AERDYLDLTA	10	Unmodified	_AERDYLDLTA_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENST00000438277.5_1_2:128855105-128928859:+|nuORF	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	HCT116MG_D190212_S4	4	583.7880249023438	2	583.788035	1165.56152	0.29378	0.0001715	0.21617	0.0001262	0.50995	0.0002977	583.7880597454799	43.821	0.35569	43.447	43.267	43.623	-0.37433					12	6	3	0	0	0	0.039616	2	16123	16123;16190		94.909	41.505	1	14989000			2310	3428	1087	1104	2320;2321	2320					-0.014640874614769928
AEREADLTG	9	Unmodified	_AEREADLTG_					0	0	0			REV__nc|ENSG00000152969|Q96N16-7|JAKMIP1	REV__nc|ENSG00000152969|Q96N16-7|JAKMIP1	MULTI-MSMS	HCT116MG_D190212_S4	4	961.4606323242188	1	961.458515	960.451239	0.50932	0.00048969	0.52529	0.00050505	1.0346	0.00099474	961.4590358459366	19.03	0.20792	18.843	18.713	18.921	-0.18674					6	3	2	0	0	0	0.071914	1	6435	6435		63.961	1.3878	1	1812900	+		2311	12641	1088	1105	2322	2322					-0.030568877298605912
AEREAEKE	8	Unmodified	_AEREAEKE_					0	0	0		ENSG00000143751|ENST00000272091|SDE2;nc|ENSG00000143751|Q6IQ49-2|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-MSMS	HCT116MG_D190212_S1	1	481.2329406738281	2	481.232896	960.451239	0.064039	3.0818E-05	-0.29604	-0.00014247	-0.232	-0.00011165	481.23274864918193	19.001	0.31277	19.001	18.819	19.131	0					11	5	3	0	0	0	0.40593	1	6578	6578		49.554	0	1	9450800			2312	3830	1089	1106	2323	2323					-0.030568877298605912
AEREAEKE	8	Unmodified	_AEREAEKE_					0	0	0		ENSG00000143751|ENST00000272091|SDE2;nc|ENSG00000143751|Q6IQ49-2|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-MSMS	HCT116MG_D190212_S4	4	481.23297119140625	2	481.232896	960.451239	0.19372	9.3224E-05	0.1699	8.1763E-05	0.36362	0.00017499	481.2328303574191	19.03	0.41593	18.843	18.661	19.077	-0.18674					17	7	3	0	0	0	0.095352	1	6413	6413		96.111	0	1	21122000			2313	3830	1089	1106	2324	2324					-0.030568877298605912
AEREAETVG	9	Unmodified	_AEREAETVG_					0	0	0			REV__ENST00000469599.6_1_Y:21877495-21878275:-|nuORF	REV__ENST00000469599.6_1_Y:21877495-21878275:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	481.23284912109375	2	481.232896	960.451239	0.1908	9.1818E-05	0.0013986	6.7307E-07	0.1922	9.2491E-05	481.2327935623645	19.492	0.46795	19.122	18.992	19.46	-0.3695					19	8	3	0	0	0	0.016744	1	6766	6766		99.755	3.3887	1	80297000	+		2314	10528	1090	1107	2325	2325					-0.030568877298492225
AEREAETVG	9	Unmodified	_AEREAETVG_					0	0	0			REV__ENST00000469599.6_1_Y:21877495-21878275:-|nuORF	REV__ENST00000469599.6_1_Y:21877495-21878275:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	481.232896	960.451239	0.064039	3.0818E-05	-0.29604	-0.00014247	-0.232	-0.00011165	481.23274864918193	19.001	0.31277	19.001	18.819	19.131	0	0.060228	-0.00037103	NaN	99.755	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9450800	+		2315	10528	1090	1107							-0.030568877298492225
AEREAETVG	9	Unmodified	_AEREAETVG_					0	0	0			REV__ENST00000469599.6_1_Y:21877495-21878275:-|nuORF	REV__ENST00000469599.6_1_Y:21877495-21878275:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	481.232896	960.451239	0.1908	9.1818E-05	0.0013986	6.7307E-07	0.1922	9.2491E-05	481.2327935623645	19.492	0.46795	19.122	18.992	19.46	-0.3695	0.18166	-8.4756E-05	NaN	99.755	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80297000	+		2316	10528	1090	1107							-0.030568877298492225
AEREAETVG	9	Unmodified	_AEREAETVG_					0	0	0			REV__ENST00000469599.6_1_Y:21877495-21878275:-|nuORF	REV__ENST00000469599.6_1_Y:21877495-21878275:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	481.232896	960.451239	0.19859	9.5569E-05	0.14545	6.9993E-05	0.34404	0.00016556	481.23287350652436	18.728	0.5205	18.797	18.563	19.083	0.069159	-0.14414	5.3884E-05	NaN	99.755	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64063000	+		2317	10528	1090	1107							-0.030568877298492225
AEREAILP	8	Unmodified	_AEREAILP_					0	0	0			REV__nc|ENSG00000166349|P15918-2|RAG1	REV__nc|ENSG00000166349|P15918-2|RAG1	MULTI-MSMS	HCT116MG_D190212_S3	3	449.7532958984375	2	449.753267	897.491981	-0.07902	-3.5539E-05	0.46284	0.00020816	0.38382	0.00017262	449.7534586336973	36.024	0.30686	35.724	35.527	35.834	-0.30042					8	5	2	0	0	0	0.76257	1	13322	13322		15.768	0	1	2121900	+		2318	13101	1091	1108	2326	2326					0.03913498380427427
AEREKEFVA	9	Unmodified	_AEREKEFVA_					0	0	0		nc|ENSG00000079950|O15400-2|STX7;ENSG00000079950|ENST00000367941|STX7	nc|ENSG00000079950|O15400-2|STX7	nc|ENSG00000079950|O15400-2|STX7	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7799072265625	2	539.780013	1077.54547	0.53705	0.00028989	-0.56388	-0.00030437	-0.026833	-1.4484E-05	539.7798906391033	24.957	0.36327	24.582	24.4	24.764	-0.37521					10	6	3	0	0	0	0.14376	1	8979	8979		49.527	14.595	1	13801000			2319	1388	1092	1109	2327	2327					0.009802510922781948
AEREKEFVA	9	Unmodified	_AEREKEFVA_					0	0	0		nc|ENSG00000079950|O15400-2|STX7;ENSG00000079950|ENST00000367941|STX7	nc|ENSG00000079950|O15400-2|STX7	nc|ENSG00000079950|O15400-2|STX7	MULTI-SECPEP	HCT116MG_D190212_S3	3	539.7798461914062	2	539.780013	1077.54547	0.34439	0.00018589	0.19745	0.00010658	0.54184	0.00029247	539.7794125969482	24.27	0.25989	24.209	24.051	24.311	-0.061449					9	4	3	0	0	0	0.23782	1	8633	8633		11.495	2.7493	1	3138400			2320	1388	1092	1109	2328	2328					0.009802510922781948
AERERRVR	8	Unmodified	_AERERRVR_					0	0	0		nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000464199.5_1_20:9351789-9459633:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4	nc|ENSG00000101333|Q15147-2|PLCB4	nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-SECPEP	HCT116MG_D190212_S3	3	536.7861328125	2	536.310138	1070.60572	0.34771	0.00018648	-0.67888	-0.00036409	-0.33117	-0.00017761	536.309536993482	38.784	0.26057	38.482	38.3	38.561	-0.30137					5	4	2	0	0	0	0.32676	1	14370	14370		4.756	0	1	5729400			2321	1777	1093	1110	2329	2329					0.07324406266025107
AERFAPNLVQ	10	Unmodified	_AERFAPNLVQ_					0	0	0			REV__nc|ENSG00000087460|Q5JWF2|GNAS	REV__nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-SECPEP	HCT116MG_D190212_S2	2	572.0438232421875	2	572.809105	1143.60366	0.53363	0.00030567	-0.73197	-0.00041928	-0.19834	-0.00011361	572.8084571981908	32.874	0.15318	32.663	32.586	32.739	-0.21135					4	2	2	0	0	0	0.2916	1	12177	12177		2.4985	0	1	45785000	+		2322	17085	1094	1111	2330	2330					0.03759932737534655
AERFYGKYTA	10	Unmodified	_AERFYGKYTA_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	HCT116MG_D190212_S1	1	603.3019409179688	2	603.301113	1204.58767	0.48918	0.00029512	1.2658	0.00076365	1.755	0.0010588	603.301560894229	27.742	0.15613	27.742	27.644	27.8	0					4	2	2	0	0	0	0.39092	1	10102	10102		42.835	15.206	1	5337800			2323	2582	1095	1112	2331	2331					-0.006437734993369304
AERFYGKYTA	10	Unmodified	_AERFYGKYTA_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	HCT116MG_D190212_S2	2	603.3016967773438	2	603.301113	1204.58767	0.71757	0.00043291	-0.11523	-6.952E-05	0.60234	0.00036339	603.3009309746392	28.178	0.25909	27.848	27.667	27.926	-0.32987					10	4	3	0	0	0	0.016108	1	10269	10269		129.39	89.149	1	63143000			2324	2582	1095	1112	2332	2332					-0.006437734993369304
AERFYGKYTA	10	Unmodified	_AERFYGKYTA_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	HCT116MG_D190212_S2	2	402.870849609375	3	402.536501	1204.58767	-0.057815	-2.3273E-05	0.38805	0.0001562	0.33023	0.00013293	402.5366455987714	28.159	0.20716	27.829	27.719	27.926	-0.32987					8	3	3	0	0	0	0.10753	1	10272	10272		57.885	39.163	1	30983000			2325	2582	1095	1112	2333	2333					-0.006437734993369304
AERFYGKYTA	10	Unmodified	_AERFYGKYTA_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	HCT116MG_D190212_S3	3	603.301513671875	2	603.301113	1204.58767	0.47124	0.0002843	0.083709	5.0502E-05	0.55495	0.0003348	603.3008676353948	28.095	0.31307	27.907	27.777	28.09	-0.18847					9	5	3	0	0	0	0.022508	1	10159	10159		115.82	81.42	1	11217000			2326	2582	1095	1112	2334	2334					-0.006437734993369304
AERFYGKYTA	10	Unmodified	_AERFYGKYTA_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	HCT116MG_D190212_S3	3	402.87091064453125	3	402.536501	1204.58767	-0.086762	-3.4925E-05	0.087388	3.5177E-05	0.00062595	2.5197E-07	402.5365418614551	28.091	0.26045	27.903	27.725	27.985	-0.18847					10	4	3	0	0	0	0.2047	1	10162	10162		52.735	37.197	1	8528300			2327	2582	1095	1112	2335	2335					-0.006437734993369304
AERFYGKYTA	10	Unmodified	_AERFYGKYTA_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MATCH	HCT116MG_D190212_S1	1		3	402.536501	1204.58767	-0.064994	-2.6163E-05	-0.61727	-0.00024847	-0.68226	-0.00027464	402.5363131049566	27.722	0.15613	27.722	27.644	27.8	0	-0.13108	-0.00083631	NaN	57.885	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5598100			2328	2582	1095	1112							-0.006437734993369304
AERFYGKYTA	10	Unmodified	_AERFYGKYTA_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MATCH	HCT116MG_D190212_S4	4		3	402.536501	1204.58767	0.075852	3.0533E-05	-0.36911	-0.00014858	-0.29326	-0.00011805	402.87055000093176	28.29	0.20825	27.959	27.804	28.012	-0.33138	0.1058	-0.00053663	NaN	57.885	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1195700			2329	2582	1095	1112							-0.006437734993369304
AERGEWSAAK	10	Unmodified	_AERGEWSAAK_					0	0	0			REV__MANSC1|p.T354A|1|0.62|ENSG00000111261|chr12:12330263-12330263|T/C|missense_variant	REV__MANSC1|p.T354A|1|0.62|ENSG00000111261|chr12:12330263-12330263|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	368.8524169921875	3	368.8526	1103.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.672	1	18.309	17.809	18.809	-0.36325								0	0	0	0.75654	1	6431	6431		23.801	6.6882	1		+		2330	17002	1096	1113	2336	2336					-0.011655171932488884
AERGHPLPQ	9	Unmodified	_AERGHPLPQ_					0	0	0			REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	503.1076354980469	2	502.76724	1003.51993	0.31458	0.00015816	0.57868	0.00029094	0.89326	0.0004491	502.76751625962817	19.852	0.51007	19.658	19.278	19.788	-0.19367					13	9	2	0	0	0	0.53593	1	6643	6643		14.838	0	1	3501700	+		2331	11862	1097	1114	2337	2337					0.018308213605109813
AERGPPASA	9	Unmodified	_AERGPPASA_					0	0	0		ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	MSMS	HCT116MG_D190212_S1	1	428.2203369140625	2	428.219591	854.42463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.856	1	16.856	16.356	17.356	0								0	0	0	0.64822	1	5701	5701		21.59	3.4552	1				2332	5556	1098	1115	2338	2338					-0.008405318305449327
AERGPPASA	9	Unmodified	_AERGPPASA_					0	0	0		ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	MULTI-MSMS	HCT116MG_D190212_S2	2	428.2199401855469	2	428.219591	854.42463	0.074588	3.194E-05	-0.10849	-4.6456E-05	-0.033899	-1.4516E-05	428.2195066893252	17.105	0.83408	16.755	16.353	17.187	-0.34933					26	15	2	0	0	0	0.060947	1	5744	5744		69.338	15.505	1	12009000			2333	5556	1098	1115	2339	2339					-0.008405318305449327
AERGPPASA	9	Unmodified	_AERGPPASA_					0	0	0		ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	MULTI-MSMS	HCT116MG_D190212_S3	3	428.2193298339844	2	428.219591	854.42463	0.062073	2.6581E-05	0.070578	3.0223E-05	0.13265	5.6804E-05	428.2194881224737	16.17	0.78018	16.255	15.769	16.549	0.085424					30	14	3	0	0	0	0.11498	1	5274	5274		55.235	17.261	1	2953300			2334	5556	1098	1115	2340	2340					-0.008405318305449327
AERGRVPPP	9	Unmodified	_AERGRVPPP_					0	0	0		ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	MULTI-MSMS	HCT116MG_D190212_S1	1	489.7776794433594	2	489.777608	977.540663	0.48775	0.00023889	-0.37433	-0.00018334	0.11342	5.5553E-05	489.77739400578304	17.694	0.67759	17.694	17.516	18.193	0					24	12	3	0	0	0	0.020353	1	6040	6040		96.111	53.143	1	13459000			2335	5872	1099	1116	2341	2341					0.050994117401728545
AERGRVPPP	9	Unmodified	_AERGRVPPP_					0	0	0		ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	MULTI-MSMS	HCT116MG_D190212_S2	2	489.7775573730469	2	489.777608	977.540663	-0.087392	-4.2802E-05	0.28164	0.00013794	0.19425	9.5141E-05	489.7776843923077	18.382	1.147	18.018	17.799	18.946	-0.36325					48	21	3	0	0	0	0.0063854	2	6300	6300;6565		125.53	81.122	1	98776000			2336	5872	1099	1116	2342;2343	2342					0.050994117401728545
AERGRVPPP	9	Unmodified	_AERGRVPPP_					0	0	0		ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	MULTI-MSMS	HCT116MG_D190212_S3	3	489.7777099609375	2	489.777608	977.540663	-0.084228	-4.1253E-05	-0.15155	-7.4226E-05	-0.23578	-0.00011548	489.7774294257664	17.062	0.93665	17.146	16.912	17.849	0.084467					30	17	3	0	0	0	0.016744	1	5688	5688		99.755	55.897	1	14051000			2337	5872	1099	1116	2344	2344					0.050994117401728545
AERHAQPPP	9	Unmodified	_AERHAQPPP_					0	0	0		SCAF8|p.T1219A|1|0.18|ENSG00000213079|chr6:154833234-154833234|A/G|missense_variant	SCAF8|p.T1219A|1|0.18|ENSG00000213079|chr6:154833234-154833234|A/G|missense_variant	SCAF8|p.T1219A|1|0.18|ENSG00000213079|chr6:154833234-154833234|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	501.76019287109375	2	501.759415	1001.50428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.158	1	17.158	16.658	17.658	0								0	0	0	0.76694	1	5822	5822		11.64	0	1				2338	18135	1100	1117	2345	2345					0.003585348434626212
AERHLHPQ	8	Unmodified	_AERHLHPQ_					0	0	0		nc|ENSG00000081059|P36402-12|TCF7;nc|ENSG00000081059|P36402-4|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7	nc|ENSG00000081059|P36402-12|TCF7	nc|ENSG00000081059|P36402-12|TCF7	MSMS	HCT116MG_D190212_S4	4	494.2593688964844	2	494.259582	986.504612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.342	1	24.08	23.58	24.58	-0.26163								0	0	0	0.82692	1	8571	8571		20.454	2.3073	1				2339	9387	1101	1118	2346	2346					0.010819545633239613
AERKESSP	8	Unmodified	_AERKESSP_					0	0	0			REV__ENST00000541143.5_1_12:131438494-131438635:+|nuORF	REV__ENST00000541143.5_1_12:131438494-131438635:+|nuORF	MSMS	HCT116MG_D190212_S3	3	452.2305603027344	2	452.230156	902.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.638	1	21.656	21.156	22.156	0.018446								0	0	0	0.65638	1	7550	7550		34.102	0	1		+		2340	16368	1102	1119	2347	2347					-0.009365665216591879
AERKFKQVA	9	Unmodified	_AERKFKQVA_					0	0	0		ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6	ENST00000488001.5_1_7:157151266-157161444:+|nuORF	ENST00000488001.5_1_7:157151266-157161444:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	359.54534912109375	3	359.545219	1075.61383	-0.21457	-7.7147E-05	-0.14518	-5.2199E-05	-0.35975	-0.00012935	359.5452269201049	17.98	0.20888	17.623	17.493	17.702	-0.35647					5	3	2	0	0	0	0.51301	1	6172	6172		11.518	2.5416	1	6769400			2341	2051	1103	1120	2348	2348					0.07904540462800469
AERKFKQVA	9	Unmodified	_AERKFKQVA_					0	0	0		ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6	ENST00000488001.5_1_7:157151266-157161444:+|nuORF	ENST00000488001.5_1_7:157151266-157161444:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.7742309570312	2	538.81419	1075.61383	0.43359	0.00023362	-0.064703	-3.4863E-05	0.36889	0.00019876	538.8141138179908	17.98	0.20888	17.623	17.493	17.702	-0.35647					9	3	3	0	0	0	0.14607	1	6155	6155		53.404	24.917	1	12748000			2342	2051	1103	1120	2349	2349					0.07904540462800469
AERLDQEEA	9	Unmodified	_AERLDQEEA_					0	0	0		ENST00000589493.1_1_17:40967924-40970674:-|nuORF;ENSG00000126581|ENST00000590099|BECN1	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	530.7491455078125	2	530.74891	1059.48327	0.33847	0.00017964	-0.20086	-0.0001066	0.13761	7.3038E-05	530.7488562382787	21.63	0.25964	21.245	21.115	21.375	-0.38503					5	4	2	0	0	0	0.11363	1	7633	7633		55.503	3.2344	1	11493000			2343	2941	1104	1121	2350	2350					-0.044095200466927054
AERLDQEEA	9	Unmodified	_AERLDQEEA_					0	0	0		ENST00000589493.1_1_17:40967924-40970674:-|nuORF;ENSG00000126581|ENST00000590099|BECN1	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	ENST00000589493.1_1_17:40967924-40970674:-|nuORF	MSMS	HCT116MG_D190212_S3	3	530.7493286132812	2	530.74891	1059.48327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.134	1	21.165	20.665	21.665	0.030685								0	0	0	0.38693	1	7349	7349		34.222	5.1401	1				2344	2941	1104	1121	2351	2351					-0.044095200466927054
AERLKRKY	8	Unmodified	_AERLKRKY_					0	0	0			REV__ENSG00000155827|ENST00000389120|RNF20	REV__ENSG00000155827|ENST00000389120|RNF20	MSMS	HCT116MG_D190212_S2	2	532.3228759765625	2	532.322183	1062.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.105	1	27.775	27.275	28.275	-0.32987								0	0	0	0.8837	1	10238	10238		9.3474	0	1		+		2345	12710	1105	1122	2352	2352					0.101002466996988
AERLPDRTEA	10	Unmodified	_AERLPDRTEA_					0	0	0		MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant;MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant	MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	579.299560546875	2	579.299101	1156.58365	0.64748	0.00037509	-0.25425	-0.00014729	0.39323	0.0002278	579.2991114346603	20.746	0.20852	20.746	20.644	20.852	0					5	3	2	0	0	0	0.65404	1	7295	7295		27.088	9.6457	1	2262500			2346	4894	1106	1123	2353	2353					0.011621370069633485
AERLPDRTEA	10	Unmodified	_AERLPDRTEA_					0	0	0		MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant;MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant	MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	386.5352478027344	3	386.53516	1156.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.839	1	20.839	20.339	21.339	0								0	0	0	0.9133	1	7304	7304		12.929	0.072748	1				2347	4894	1106	1123	2354	2354					0.011621370069633485
AERLPDRTEA	10	Unmodified	_AERLPDRTEA_					0	0	0		MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant;MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant	MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	579.299072265625	2	579.299101	1156.58365	0.3757	0.00021764	-0.10019	-5.8041E-05	0.27551	0.0001596	579.2990895710184	21.319	0.31037	20.936	20.703	21.013	-0.38288					12	5	3	0	0	0	0.39053	1	7498	7498		55.249	18.174	1	26614000			2348	4894	1106	1123	2355	2355					0.011621370069633485
AERLPDRTEA	10	Unmodified	_AERLPDRTEA_					0	0	0		MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant;MAP1A|p.K1546Rfs*6|1|0.28|ENSG00000166963|chr15:43526107-43526107|A/-|frameshift_variant;MAP1A|p.L1905Pfs*9|1|0.27|ENSG00000166963|chr15:43527180-43527181|-/C|frameshift_variant;MAP1A|p.R2065Vfs*5|1|0.25|ENSG00000166963|chr15:43527660-43527660|C/-|frameshift_variant;MAP1A|p.G2418Afs*36|1|0.26|ENSG00000166963|chr15:43528722-43528722|G/-|frameshift_variant;MAP1A|p.S2460Ifs*4|1|0.32|ENSG00000166963|chr15:43528844-43528845|-/C|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant	MAP1A|p.V1503Sfs*16|1|0.28|ENSG00000166963|chr15:43525975-43525975|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	386.5351867675781	3	386.53516	1156.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.392	1	21.009	20.509	21.509	-0.38288								0	0	0	0.81671	1	7526	7526		26.644	7.4996	1				2349	4894	1106	1123	2356	2356					0.011621370069633485
AERLVQRQ	8	Unmodified	_AERLVQRQ_					0	0	0			REV__MEGF8|p.P499Rfs*19|1|0.53|ENSG00000105429|chr19:42337186-42337186|C/-|frameshift_variant;REV__MEGF8|p.D1331Tfs*8|1|0.35|ENSG00000105429|chr19:42353999-42353999|C/-|frameshift_variant	REV__MEGF8|p.D1331Tfs*8|1|0.35|ENSG00000105429|chr19:42353999-42353999|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	500.28900146484375	2	500.28834	998.562127	0.34325	0.00017172	0.63453	0.00031745	0.97778	0.00048917	500.28875406464505	18.102	0.20778	18.179	18.049	18.257	0.076334					5	3	2	0	0	0	0.7524	1	6152	6152		16.942	0	1	2935500	+		2350	17017;11254	1107	1124	2357	2357					0.06278796768890516
AERMGFTEL	9	Unmodified	_AERMGFTEL_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	HCT116MG_D190212_S1	1	527.255859375	2	527.255317	1052.49608	0.35939	0.00018949	0.45782	0.00024139	0.81721	0.00043088	527.2555022839895	45.321	0.2072	45.321	45.244	45.451	0					5	3	2	0	0	0	0.011132	1	17200	17200		110.55	58.284	1	9659600			2351	9517	1108	1125	2358	2358					-0.02806780188166158
AERMGFTEL	9	Unmodified	_AERMGFTEL_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2557373046875	2	527.255317	1052.49608	0.44285	0.0002335	-0.16377	-8.6347E-05	0.27908	0.00014715	527.2552635031378	45.296	0.36203	45.204	45.049	45.411	-0.092472					15	6	4	0	0	0	0.012531	1	17218	17218		107.1	53.267	1	73801000			2352	9517	1108	1125	2359	2359					-0.02806780188166158
AERMGFTEL	9	Unmodified	_AERMGFTEL_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	HCT116MG_D190212_S3	3	527.2554931640625	2	527.255317	1052.49608	0.47765	0.00025184	0.2523	0.00013302	0.72994	0.00038487	527.2553688249064	45.568	0.4165	45.257	45.096	45.512	-0.31094					11	7	2	0	0	0	0.0051419	1	17065	17065		136.39	84.124	1	20027000			2353	9517	1108	1125	2360	2360					-0.02806780188166158
AERMGFTEL	9	Unmodified	_AERMGFTEL_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	HCT116MG_D190212_S4	4	527.2554321289062	2	527.255317	1052.49608	0.47386	0.00024985	0.29227	0.0001541	0.76613	0.00040395	527.2555349949546	45.652	0.30626	45.279	45.091	45.398	-0.37265					9	5	2	0	0	0	0.029121	1	16857	16857		87.258	49.284	1	6835800			2354	9517	1108	1125	2361	2361					-0.02806780188166158
AERMGFTEV	9	Unmodified	_AERMGFTEV_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	HCT116MG_D190212_S1	1	520.2474975585938	2	520.247492	1038.48043	0.17785	9.2525E-05	-0.11643	-6.0571E-05	0.061421	3.1954E-05	520.2474080855408	39.32	0.21781	39.32	39.231	39.449	0					9	4	3	0	0	0	0.20521	1	14770	14770		40.725	0.77521	1	20782000			2355	4461	1109	1126	2362	2362					-0.03727066705209836
AERMGFTEV	9	Unmodified	_AERMGFTEV_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	HCT116MG_D190212_S2	2	520.248046875	2	520.247492	1038.48043	0.51192	0.00026633	0.34978	0.00018197	0.86171	0.0004483	520.2476411478848	39.33	0.35787	39.252	39.07	39.428	-0.077835					12	6	3	0	0	0	0.029121	2	14801	14801;14851		87.258	38.912	1	167320000			2356	4461	1109	1126	2363;2364	2363					-0.03727066705209836
AERMGFTEV	9	Unmodified	_AERMGFTEV_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2477416992188	2	520.247492	1038.48043	0.22666	0.00011792	0.097663	5.0809E-05	0.32433	0.00016873	520.2473966630384	39.572	0.31355	39.271	39.087	39.4	-0.30137					22	11	2	0	0	0	0.12465	1	14680	14680		53.317	20.531	1	102010000			2357	4461	1109	1126	2365	2365					-0.03727066705209836
AERMGFTEV	9	Unmodified	_AERMGFTEV_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MSMS	HCT116MG_D190212_S4	4	520.247802734375	2	520.247492	1038.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.68	1	39.301	38.801	39.801	-0.37936								0	0	0	0.10279	1	14569	14569		55.235	22.449	1				2358	4461	1109	1126	2366	2366					-0.03727066705209836
AERMGFTEV	9	Unmodified	_AERMGFTEV_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	520.247492	1038.48043	0.17785	9.2525E-05	-0.11643	-6.0571E-05	0.061421	3.1954E-05	520.2474080855408	39.32	0.21781	39.32	39.231	39.449	0	0.039144	-0.00026152	NaN	87.258	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20782000			2359	4461	1109	1126							-0.03727066705209836
AERMGFTEV	9	Oxidation (M)	_AERM(Oxidation (M))GFTEV_		AERM(1)GFTEV		AERM(69)GFTEV	0	0	1		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	HCT116MG_D190212_S2	2	528.2454223632812	2	528.244949	1054.47534	0.66426	0.00035089	0.16435	8.6818E-05	0.82861	0.00043771	528.2449326362216	31.588	0.36316	31.339	31.095	31.458	-0.24883					10	6	2	0	0	0	0.060947	1	11631	11631		69.338	27.244	1	15479000			2360	4461	1109	1127	2367	2367		99			-0.04971370567818667
AERMGFTEV	9	Oxidation (M)	_AERM(Oxidation (M))GFTEV_		AERM(1)GFTEV		AERM(74)GFTEV	0	0	1		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	HCT116MG_D190212_S3	3	528.244873046875	2	528.244949	1054.47534	0.38377	0.00020273	0.027803	1.4687E-05	0.41158	0.00021741	528.2448044547288	31.597	0.46929	31.327	31.117	31.586	-0.27028					18	8	3	0	0	0	0.051033	1	11543	11543		74.2	30.341	1	10459000			2361	4461	1109	1127	2368	2368		99			-0.04971370567818667
AERMGFTEV	9	Oxidation (M)	_AERM(Oxidation (M))GFTEV_		AERM(1)GFTEV		AERM(78)GFTEV	0	0	1		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	HCT116MG_D190212_S4	4	528.2449340820312	2	528.244949	1054.47534	0.34901	0.00018436	0.19053	0.00010065	0.53954	0.00028501	528.2449028713884	31.714	0.51917	31.341	31.176	31.695	-0.37364					17	9	3	0	0	0	0.043159	1	11515	11515		78.06	34.202	1	10974000			2362	4461	1109	1127	2369	2369		99			-0.04971370567818667
AERMGFTEV	9	Oxidation (M)	_AERM(Oxidation (M))GFTEV_					0	0	1		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MATCH	HCT116MG_D190212_S1	1		2	528.244949	1054.47534	0.46943	0.00024798	0.3921	0.00020712	0.86153	0.0004551	528.2451126301288	31.242	0.31251	31.242	31.023	31.336	0	-0.070683	0.00023742	NaN	78.06	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3524500			2363	4461	1109	1127				99			-0.04971370567818667
AERNSNLVGA	10	Unmodified	_AERNSNLVGA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF;ENST00000368298.2_1_1:156104977-156106341:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S1	1	515.7676391601562	2	515.767437	1029.52032	0.42348	0.00021842	-0.062537	-3.2254E-05	0.36095	0.00018616	515.7674036911342	23.967	0.31365	23.967	23.732	24.045	0					10	5	3	0	0	0	0.079802	1	8560	8560		78.06	35.748	1	29347000			2364	4464	1110	1128	2370	2370					0.006741962897194753
AERNSNLVGA	10	Unmodified	_AERNSNLVGA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF;ENST00000368298.2_1_1:156104977-156106341:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7677001953125	2	515.767437	1029.52032	0.35878	0.00018505	0.062154	3.2057E-05	0.42094	0.00021711	515.7674457131969	24.436	0.46955	24.056	23.874	24.344	-0.38003					21	8	4	0	0	0	0.031798	1	8754	8754		100.71	46.876	1	174550000			2365	4464	1110	1128	2371	2371					0.006741962897194753
AERNSNLVGA	10	Unmodified	_AERNSNLVGA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF;ENST00000368298.2_1_1:156104977-156106341:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S2	2	1030.5286865234375	1	1030.5276	1029.52032	0.50713	0.00052261	-0.1399	-0.00014417	0.36722	0.00037843	1030.527486471958	24.436	0.26055	24.056	23.926	24.187	-0.38003					7	4	2	0	0	0	0.031798	1	8782	8782		100.71	46.876	1	14184000			2366	4464	1110	1128	2372	2372					0.006741962897194753
AERNSNLVGA	10	Unmodified	_AERNSNLVGA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF;ENST00000368298.2_1_1:156104977-156106341:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7672729492188	2	515.767437	1029.52032	0.15432	7.9592E-05	0.32326	0.00016673	0.47758	0.00024632	515.7674805931911	23.878	0.41707	23.817	23.634	24.051	-0.061449					24	7	4	0	0	0	0.044769	1	8434	8434		91.085	45.345	1	84909000			2367	4464	1110	1128	2373	2373					0.006741962897194753
AERNSNLVGA	10	Unmodified	_AERNSNLVGA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF;ENST00000368298.2_1_1:156104977-156106341:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S3	3	1030.5277099609375	1	1030.5276	1029.52032	0.49643	0.00051158	-0.22721	-0.00023414	0.26922	0.00027744	1030.5274086490413	23.878	0.20852	23.817	23.686	23.895	-0.061449					6	3	2	0	0	0	0.031798	1	8479	8479		100.71	49.079	1	3212500			2368	4464	1110	1128	2374	2374					0.006741962897194753
AERNSNLVGA	10	Unmodified	_AERNSNLVGA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF;ENST00000368298.2_1_1:156104977-156106341:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S4	4	515.767578125	2	515.767437	1029.52032	0.40146	0.00020706	0.34004	0.00017538	0.7415	0.00038244	515.7674115829403	24.167	0.31153	23.908	23.781	24.093	-0.25816					15	5	3	0	0	0	0.10445	1	8502	8502		73.196	27.497	1	16672000			2369	4464	1110	1128	2375	2375					0.006741962897194753
AERPGPPTP	9	Unmodified	_AERPGPPTP_					0	0	0		ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-MSMS	HCT116MG_D190212_S2	2	461.2430114746094	2	461.243067	920.47158	0.15724	7.2524E-05	0.10542	4.8623E-05	0.26265	0.00012115	461.24304693958896	21.015	0.93873	20.632	20.127	21.065	-0.38288					32	17	2	0	0	0	0.37539	1	7320	7320		24.021	2.2739	1	9338000			2370	1503	1111	1129	2376	2376					0.00816327720622212
AERPPGVAA	9	Unmodified	_AERPPGVAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	434.23748779296875	2	434.237784	866.461016	0.031376	1.3625E-05	0.12273	5.3294E-05	0.15411	6.6919E-05	434.2377455661117	21.929	0.93916	21.929	21.594	22.533	0					38	17	3	0	0	0	0.34272	2	7916	7682;7916		26.268	9.1823	1	59200000			2371	8716	1112	1130	2377;2378	2378					0.022443450661853603
AERPPGVAA	9	Unmodified	_AERPPGVAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	867.4688720703125	1	867.468292	866.461016	0.73251	0.00063543	-0.0066657	-5.7823E-06	0.72584	0.00062964	867.4682102405563	21.967	0.52174	21.967	21.698	22.22	0					15	9	2	0	0	0	0.023778	1	7731	7731		92.653	27.418	1	4528200			2372	8716	1112	1130	2379	2379					0.022443450661853603
AERPPGVAA	9	Unmodified	_AERPPGVAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	434.2376708984375	2	434.237784	866.461016	0.14287	6.2039E-05	0.14062	6.1064E-05	0.28349	0.0001231	434.23776677137823	22.323	1.1951	21.938	21.635	22.83	-0.3852					61	22	4	0	0	0	0.023778	2	7875	7875;8106		92.653	33.975	1	399060000			2373	8716	1112	1130	2380;2381	2380					0.022443450661853603
AERPPGVAA	9	Unmodified	_AERPPGVAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	867.4688720703125	1	867.468292	866.461016	0.95062	0.00082463	-0.046258	-4.0128E-05	0.90436	0.0007845	867.4680970562488	22.307	0.83084	21.922	21.739	22.57	-0.3852					37	15	3	0	0	0	0.01405	2	7876	7876;8107		103.35	38.118	1	107220000			2374	8716	1112	1130	2382;2383	2382					0.022443450661853603
AERPPGVAA	9	Unmodified	_AERPPGVAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	434.23773193359375	2	434.237784	866.461016	0.15689	6.8126E-05	-0.10274	-4.4613E-05	0.054147	2.3513E-05	434.2377056182279	21.779	1.5041	21.789	21.369	22.873	0.010324					83	28	4	0	0	0	0.01405	2	7537	7537;7766		103.35	38.757	1	295820000			2375	8716	1112	1130	2384;2385	2384					0.022443450661853603
AERPPGVAA	9	Unmodified	_AERPPGVAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	867.4691162109375	1	867.468292	866.461016	0.78984	0.00068516	-0.0529	-4.5889E-05	0.73694	0.00063927	867.4681428376806	21.784	0.78469	21.793	21.525	22.31	0.0083408					32	14	3	0	0	0	0.01405	1	7580	7580		103.35	38.118	1	27525000			2376	8716	1112	1130	2386	2386					0.022443450661853603
AERPPGVAA	9	Unmodified	_AERPPGVAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	434.2376708984375	2	434.237784	866.461016	0.23497	0.00010203	-0.084676	-3.6769E-05	0.1503	6.5265E-05	434.23764870097017	22.086	1.2481	21.859	21.468	22.716	-0.22777					65	23	4	0	0	0	0.034046	2	7582	7582;7810		82.529	34.781	1	100220000			2377	8716	1112	1130	2387;2388	2387					0.022443450661853603
AERPPGVAA	9	Unmodified	_AERPPGVAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	867.4686889648438	1	867.468292	866.461016	0.77273	0.00067032	-0.067827	-5.8838E-05	0.7049	0.00061148	867.4681364084958	22.034	0.77908	21.806	21.572	22.351	-0.22777					33	14	3	0	0	0	0.01405	1	7622	7622		103.35	38.118	1	13340000			2378	8716	1112	1130	2389	2389					0.022443450661853603
AERPPGVAAA	10	Unmodified	_AERPPGVAAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	469.7566223144531	2	469.756341	937.498129	0.16868	7.9236E-05	0.24288	0.0001141	0.41156	0.00019333	469.756314433582	23.263	0.46741	22.877	22.57	23.037	-0.3852					13	8	2	0	0	0	0.47325	1	8289	8289		37.075	7.9931	1	8716100			2379	8716	1113	1131	2390	2390					0.02688016611944022
AERPPGVAAA	10	Unmodified	_AERPPGVAAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	469.75616455078125	2	469.756341	937.498129	0.14614	6.8652E-05	0.020273	9.5235E-06	0.16642	7.8175E-05	469.75618554025374	22.71	0.5606	22.692	22.387	22.948	-0.018869					17	10	2	0	0	0	0.52513	1	8002	8002		33.445	3.6043	1	7374500			2380	8716	1113	1131	2391	2391					0.02688016611944022
AERPPGVAAA	10	Unmodified	_AERPPGVAAA_					0	0	0		ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	ENST00000545260.5_2_10:35104042-35104177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	469.7561950683594	2	469.756341	937.498129	-0.031213	-1.4662E-05	0.2444	0.00011481	0.21319	0.00010015	469.75621417525275	22.952	0.52411	22.715	22.497	23.021	-0.23758					15	9	2	0	0	0	0.52513	1	7990	7990		33.445	8.0456	1	2899500			2381	8716	1113	1131	2392	2392					0.02688016611944022
AERPPSKPPP	10	Unmodified	_AERPPSKPPP_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S1	1	538.29833984375	2	538.298373	1074.58219	0.43123	0.00023213	-0.35428	-0.00019071	0.076948	4.1421E-05	538.2981206033387	16.275	0.93722	16.275	15.952	16.889	0					19	17	2	0	0	0	0.45124	1	5464	5464		38.615	5.8291	1	1584700			2382	6354	1114	1132	2393	2393					0.04788547708835722
AERPPSKPPP	10	Unmodified	_AERPPSKPPP_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.2986450195312	2	538.298373	1074.58219	0.47752	0.00025705	-0.043322	-2.332E-05	0.4342	0.00023373	538.298275754935	16.714	1.8256	16.373	15.839	17.664	-0.34183					78	34	3	0	0	0	0.14359	4	5781	5550;5667;5781;6064		65.474	17.725	1	16129000			2383	6354	1114	1132	2394;2395;2396;2397	2396					0.04788547708835722
AERPPSKPPP	10	Unmodified	_AERPPSKPPP_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	359.2013854980469	3	359.201341	1074.58219	-0.16833	-6.0465E-05	0.054517	1.9583E-05	-0.11381	-4.0882E-05	359.2013222217971	16.758	1.251	16.416	15.943	17.194	-0.34183					41	23	3	0	0	0	0.05194	1	5556	5556		76.068	29.593	1	6105800			2384	6354	1114	1132	2398	2398					0.04788547708835722
AERPPSKPPP	10	Unmodified	_AERPPSKPPP_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.298583984375	2	538.298373	1074.58219	0.43704	0.00023526	0.06195	3.3348E-05	0.49899	0.00026861	538.2982771952309	15.476	2.1329	15.561	14.936	17.069	0.085424					93	40	4	0	0	0	0.22442	2	5205	4973;5205		57.249	11.549	1	11126000			2385	6354	1114	1132	2399;2400	2400					0.04788547708835722
AERPPSKPPP	10	Unmodified	_AERPPSKPPP_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S3	3	359.2012634277344	3	359.201341	1074.58219	-0.11561	-4.1528E-05	0.0026555	9.5386E-07	-0.11296	-4.0574E-05	359.2012961087153	15.449	1.8206	15.535	14.988	16.809	0.085423					66	34	3	0	0	0	0.14637	3	5207	4977;5207;5439		57.477	27.045	1	7264900			2386	6354	1114	1132	2401;2402;2403	2402					0.04788547708835722
AERPPSKPPP	10	Unmodified	_AERPPSKPPP_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S4	4	359.2010498046875	3	359.201341	1074.58219	-0.66386	-0.00023846	0.37694	0.0001354	-0.28692	-0.00010306	359.20142776220735	15.462	1.4792	15.3	14.926	16.405	-0.16173					47	29	2	0	0	0	0.51403	1	4957	4957		25.155	9.6165	1	1604700			2387	6354	1114	1132	2404	2404					0.04788547708835722
AERPRRLVP	9	Unmodified	_AERPRRLVP_					0	0	0			REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF	REV__ENST00000474602.5_1_9:99381659-99381992:-|nuORF	MSMS	HCT116MG_D190212_S2	2	547.332763671875	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.996	1	40.926	40.426	41.426	-0.069626								0	0	0	0.76781	1	15476	15476		8.5933	0.68312	1		+		2388	15900	1115	1133	2405	2405					0.10899051448268438
AERQAVTPP	9	Unmodified	_AERQAVTPP_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	HCT116MG_D190212_S2	2	484.76190185546875	2	484.761623	967.508694	0.11068	5.3655E-05	-0.22062	-0.00010695	-0.10993	-5.3291E-05	484.7614273901069	23.465	0.67526	23.081	22.623	23.298	-0.38457					16	12	2	0	0	0	0.24534	1	8397	8397		36.506	4.2007	1	7271500			2389	912	1116	1134	2406	2406					0.023639992663675002
AERQRWLVA	9	Unmodified	_AERQRWLVA_					0	0	0		PLEKHA3|p.N164*|1|0.38|ENSG00000116095|chr2:178495533-178495534|-/T|frameshift_variant;ENST00000598554.1_1_19:42027644-42028339:-|nuORF;ENSG00000116095|ENST00000234453|PLEKHA3;ENST00000498106.1_1_7:30085848-30088836:+|nuORF;nc|ENSG00000106086|Q96JA3-3|PLEKHA8;nc|ENSG00000106086|Q96JA3-2|PLEKHA8;ENSG00000106086|ENST00000449726|PLEKHA8	PLEKHA3|p.N164*|1|0.38|ENSG00000116095|chr2:178495533-178495534|-/T|frameshift_variant	PLEKHA3|p.N164*|1|0.38|ENSG00000116095|chr2:178495533-178495534|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	564.8175659179688	2	564.817264	1127.61998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.013	1	36.898	36.398	37.398	-0.11478								0	0	0	0.047972	1	13859	13859		86.332	55.064	1				2390	2500	1117	1135	2407	2407					0.06127058694301013
AERREGRP	8	Unmodified	_AERREGRP_					0	0	0		nc|ENSG00000007264|P42679-2|MATK	nc|ENSG00000007264|P42679-2|MATK	nc|ENSG00000007264|P42679-2|MATK	MSMS	HCT116MG_D190212_S1	1	485.7605285644531	2	485.762489	969.510425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.337	1	27.337	26.837	27.837	0								0	0	0	0.67883	1	9915	9915		32.305	5.4218	1				2391	9364	1118	1136	2408	2408					0.024450530749959398
AERRFAGKKG	10	Unmodified	_AERRFAGKKG_					0	0	0			REV__ENST00000162391.7_1_12:8185630-8185789:+|nuORF	REV__ENST00000162391.7_1_12:8185630-8185789:+|nuORF	MSMS	HCT116MG_D190212_S2	2	560.3216552734375	2	560.322714	1118.63087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.784	1	15.45	14.95	15.95	-0.33451								0	0	0	0.94746	1	5269	5269		5.2969	1.7004	1		+		2392	14492	1119	1137	2409	2409					0.07630461068606564
AERRGWAAP	9	Unmodified	_AERRGWAAP_					0	0	0		ENST00000486462.1_1_22:17618913-17622310:-|nuORF;ENST00000477157.5_1_22:17618913-17622310:-|nuORF;nc|ENSG00000069998|Q9BXW7-2|HDHD5;ENSG00000069998|ENST00000336737|HDHD5	ENST00000486462.1_1_22:17618913-17622310:-|nuORF	ENST00000486462.1_1_22:17618913-17622310:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	507.2672119140625	2	507.267407	1012.52026	0.32548	0.0001651	0.05739	2.9112E-05	0.38287	0.00019422	507.26753735775065	26.649	0.3128	26.287	26.128	26.441	-0.36164					9	5	2	0	0	0	0.14362	1	9673	9673		49.554	13.51	1	9171000			2393	1227	1120	1138	2410	2410					0.014502410803629573
AERRRRRRWHW	11	Unmodified	_AERRRRRRWHW_					0	0	0		ENST00000321582.9_1_9:124855435-124855555:-|nuORF	ENST00000321582.9_1_9:124855435-124855555:-|nuORF	ENST00000321582.9_1_9:124855435-124855555:-|nuORF	MSMS	HCT116MG_D190212_S1	1	832.9614868164062	2	832.964514	1663.91448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.834	1	47.834	47.334	48.334	0								0	0	0	0.96163	1	18185	18185		0.23584	0.23584	1				2394	7104	1121	1139	2411	2411					0.10907484956624103
AERSEARP	8	Unmodified	_AERSEARP_					0	0	0		ENST00000380527.2_1_9:19049532-19049658:+|nuORF	ENST00000380527.2_1_9:19049532-19049658:+|nuORF	ENST00000380527.2_1_9:19049532-19049658:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	458.23590087890625	2	458.235773	914.456993	0.090514	4.1477E-05	0.4711	0.00021587	0.56161	0.00025735	458.2359154599116	16.551	0.1562	16.551	16.473	16.629	0					4	2	2	0	0	0	0.82475	1	5607	5607		8.5933	0	1	2510100			2395	7566	1122	1140	2412	2412					-0.0036574442752908
AERSGHVAV	9	Unmodified	_AERSGHVAV_					0	0	0		nc|ENSG00000165516|Q9Y2U9-2|KLHDC2;KLHDC2|p.F310Rfs*26|1|0.05|ENSG00000165516|chr14:49780745-49780746|-/GAGAGTAT|frameshift_variant;ENSG00000165516|ENST00000298307|KLHDC2	nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	MULTI-MSMS	HCT116MG_D190212_S2	2	463.2462463378906	2	463.246141	924.477728	0.10716	4.9642E-05	0.32315	0.0001497	0.43031	0.00019934	463.24622584658357	19.127	0.41715	18.758	18.523	18.94	-0.3695					16	7	4	0	0	0	0.026272	1	6616	6616		90.135	30.061	1	33456000			2396	4781	1123	1141	2413	2413					0.012468459521414843
AERSGHVAV	9	Unmodified	_AERSGHVAV_					0	0	0		nc|ENSG00000165516|Q9Y2U9-2|KLHDC2;KLHDC2|p.F310Rfs*26|1|0.05|ENSG00000165516|chr14:49780745-49780746|-/GAGAGTAT|frameshift_variant;ENSG00000165516|ENST00000298307|KLHDC2	nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	MULTI-MATCH	HCT116MG_D190212_S4	4		2	463.246141	924.477728	-0.037612	-1.7423E-05	0.52141	0.00024154	0.48379	0.00022412	463.2463164492925	18.942	0.20795	18.755	18.609	18.817	-0.18674	-0.0012489	0.00013235	NaN	90.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1227800			2397	4781	1123	1141							0.012468459521414843
AERSPVDVS	9	Unmodified	_AERSPVDVS_					0	0	0		nc|ENSG00000066135|O75164-2|KDM4A;ENSG00000066135|ENST00000372396|KDM4A	nc|ENSG00000066135|O75164-2|KDM4A	nc|ENSG00000066135|O75164-2|KDM4A	MSMS	HCT116MG_D190212_S2	2	480.4345397949219	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.788	1	24.411	23.911	24.911	-0.3765								0	0	0	0.32081	1	8898	8898		38.615	6.3093	1				2398	1168	1124	1142	2414	2414					-0.008922973501853448
AERSTNIAA	9	Unmodified	_AERSTNIAA_					0	0	0		ENSG00000111906|ENST00000398153|HDDC2;nc|ENSG00000111906|Q7Z4H3-2|HDDC2;ENST00000609021.1_1_6:125597294-125597426:-|nuORF	ENSG00000111906|ENST00000398153|HDDC2	ENSG00000111906|ENST00000398153|HDDC2	MULTI-MSMS	HCT116MG_D190212_S1	1	466.74371337890625	2	466.743431	931.472308	0.17483	8.1599E-05	0.28107	0.00013119	0.45589	0.00021278	466.74352719229057	19.869	0.26151	19.869	19.704	19.966	0					9	4	3	0	0	0	0.05892	1	6924	6924		70.332	20.778	1	14858000			2399	2322	1125	1143	2415	2415					0.003831223696465713
AERSTNIAA	9	Unmodified	_AERSTNIAA_					0	0	0		ENSG00000111906|ENST00000398153|HDDC2;nc|ENSG00000111906|Q7Z4H3-2|HDDC2;ENST00000609021.1_1_6:125597294-125597426:-|nuORF	ENSG00000111906|ENST00000398153|HDDC2	ENSG00000111906|ENST00000398153|HDDC2	MULTI-MSMS	HCT116MG_D190212_S2	2	466.7433776855469	2	466.743431	931.472308	0.16507	7.7047E-05	0.036583	1.7075E-05	0.20166	9.4122E-05	466.74336150359494	20.429	0.31866	20.05	19.917	20.236	-0.37949					19	5	4	0	0	0	0.02327	1	7140	7140		93.166	26.709	1	135850000			2400	2322	1125	1143	2416	2416					0.003831223696465713
AERSTNIAA	9	Unmodified	_AERSTNIAA_					0	0	0		ENSG00000111906|ENST00000398153|HDDC2;nc|ENSG00000111906|Q7Z4H3-2|HDDC2;ENST00000609021.1_1_6:125597294-125597426:-|nuORF	ENSG00000111906|ENST00000398153|HDDC2	ENSG00000111906|ENST00000398153|HDDC2	MULTI-MSMS	HCT116MG_D190212_S2	2	932.48046875	1	932.479585	931.472308	0.76846	0.00071657	-0.045397	-4.2332E-05	0.72306	0.00067424	932.4796967198253	20.429	0.26585	20.05	19.917	20.183	-0.37949					9	4	3	0	0	0	0.016412	1	7151	7151		100.09	43.914	1	29797000			2401	2322	1125	1143	2417	2417					0.003831223696465713
AERSTNIAA	9	Unmodified	_AERSTNIAA_					0	0	0		ENSG00000111906|ENST00000398153|HDDC2;nc|ENSG00000111906|Q7Z4H3-2|HDDC2;ENST00000609021.1_1_6:125597294-125597426:-|nuORF	ENSG00000111906|ENST00000398153|HDDC2	ENSG00000111906|ENST00000398153|HDDC2	MULTI-MSMS	HCT116MG_D190212_S3	3	466.74346923828125	2	466.743431	931.472308	0.2635	0.00012299	-0.091778	-4.2837E-05	0.17172	8.015E-05	466.7433071573756	19.56	0.52098	19.62	19.49	20.011	0.05983					19	9	4	0	0	0	0.051033	1	6718	6718		74.2	16.478	1	38585000			2402	2322	1125	1143	2418	2418					0.003831223696465713
AERSTNIAA	9	Unmodified	_AERSTNIAA_					0	0	0		ENSG00000111906|ENST00000398153|HDDC2;nc|ENSG00000111906|Q7Z4H3-2|HDDC2;ENST00000609021.1_1_6:125597294-125597426:-|nuORF	ENSG00000111906|ENST00000398153|HDDC2	ENSG00000111906|ENST00000398153|HDDC2	MULTI-MSMS	HCT116MG_D190212_S4	4	466.74359130859375	2	466.743431	931.472308	-0.064653	-3.0176E-05	0.032841	1.5328E-05	-0.031812	-1.4848E-05	466.7433730885326	19.904	0.30713	19.71	19.533	19.84	-0.19367					9	5	2	0	0	0	0.055677	1	6783	6783		71.922	5.4656	1	6270300			2403	2322	1125	1143	2419	2419					0.003831223696465713
AERVAAERA	9	Unmodified	_AERVAAERA_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36;DHX36|p.M705Nfs*20|1|0.33|ENSG00000174953|chr3:154284905-154284906|-/T|frameshift_variant;DHX36|p.R854Efs*4|3|0.36|ENSG00000174953|chr3:154280586-154280586|T/-|frameshift_variant	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MSMS	HCT116MG_D190212_S2	2	486.7644348144531	2	486.764697	971.514842	0.13768	6.7017E-05	0.079143	3.8524E-05	0.21682	0.00010554	486.76467265952834	16.311	0.20911	15.969	15.839	16.048	-0.34183					6	3	2	0	0	0	0.042037	1	5498	5498		78.61	2.8496	1	14823000			2404	5354	1126	1144	2420	2420					0.027945174978867726
AERVFMPGV	9	Unmodified	_AERVFMPGV_					0	0	0			REV__ENSG00000131126|ENST00000598265|TEX101	REV__ENSG00000131126|ENST00000598265|TEX101	MULTI-MSMS	HCT116MG_D190212_S2	2	503.2355651855469	2	503.262945	1004.51134	0.46453	0.00023378	3.1314	0.0015759	3.5959	0.0018097	503.2645042059444	17.405	0.26145	17.056	16.821	17.082	-0.34933					5	4	2	0	0	0	0.51829	1	5870	5870		15.847	2.3393	1	2217000	+		2405	11958	1127	1145	2421	2421					0.00926131399694441
AERVLSVEPK	10	Unmodified	_AERVLSVEPK_					0	0	0			REV__nc|ENSG00000183032|Q9BQT8-2|SLC25A21	REV__nc|ENSG00000183032|Q9BQT8-2|SLC25A21	MSMS	HCT116MG_D190212_S3	3	564.322509765625	2	564.324588	1126.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.12	1	36.819	36.319	37.319	-0.30137								0	0	0	0.95892	1	13739	13739		2.7352	0.67545	1		+		2406	13740	1128	1146	2422	2422					0.0763708605179545
AERYDDMAA	9	Unmodified	_AERYDDMAA_					0	0	0		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	521.21875	2	521.218931	1040.42331	0.49157	0.00025622	-0.15004	-7.8201E-05	0.34154	0.00017802	521.2191306186794	25.901	0.5224	25.901	25.666	26.188	0					16	9	3	0	0	0	0.05892	1	9341	9341		70.332	44.064	1	19138000			2407	4731	1129	1147	2423	2423					-0.09528533981620058
AERYDDMAA	9	Unmodified	_AERYDDMAA_					0	0	0		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	521.218994140625	2	521.218931	1040.42331	0.44684	0.0002329	-0.0051636	-2.6913E-06	0.44168	0.00023021	521.2189630095172	26.262	0.51822	25.9	25.713	26.232	-0.36164					22	9	4	0	0	0	0.068828	1	9493	9493		65.474	40.074	1	163780000			2408	4731	1129	1147	2424	2424					-0.09528533981620058
AERYDDMAA	9	Unmodified	_AERYDDMAA_					0	0	0		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1041.4317626953125	1	1041.43059	1040.42331	0.89232	0.00092929	0.89624	0.00093337	1.7886	0.0018627	1041.4315844432517	26.272	0.25837	25.91	25.766	26.024	-0.36164					11	4	3	0	0	0	0.068828	1	9503	9503		65.474	32.688	1	25066000			2409	4731	1129	1147	2425	2425					-0.09528533981620058
AERYDDMAA	9	Unmodified	_AERYDDMAA_					0	0	0		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	521.218994140625	2	521.218931	1040.42331	0.42901	0.00022361	-0.022128	-1.1533E-05	0.40688	0.00021207	521.218837013793	26.117	0.57352	25.989	25.755	26.328	-0.12795					24	10	4	0	0	0	0.051033	1	9338	9338		74.2	47.932	1	100400000			2410	4731	1129	1147	2426	2426					-0.09528533981620058
AERYDDMAA	9	Unmodified	_AERYDDMAA_					0	0	0		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1041.4317626953125	1	1041.43059	1040.42331	0.67442	0.00070236	0.49738	0.00051799	1.1718	0.0012204	1041.4313868394104	26.083	0.20869	25.956	25.859	26.068	-0.12795					6	3	2	0	0	0	0.032914	1	9360	9360		83.429	39.656	1	4649900			2411	4731	1129	1147	2427	2427					-0.09528533981620058
AERYDDMAA	9	Unmodified	_AERYDDMAA_					0	0	0		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	521.2190551757812	2	521.218931	1040.42331	0.25487	0.00013285	-0.20027	-0.00010438	0.054606	2.8462E-05	521.2189471497123	26.305	0.36415	26.004	25.869	26.234	-0.30087					17	6	4	0	0	0	0.068828	1	9363	9363		65.474	39.206	1	33261000			2412	4731	1129	1147	2428	2428					-0.09528533981620058
AERYDDMAA	9	Oxidation (M)	_AERYDDM(Oxidation (M))AA_		AERYDDM(1)AA		AERYDDM(46)AA	0	0	1		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2164306640625	2	529.216388	1056.41822	0.12344	6.5324E-05	0.21341	0.00011294	0.33685	0.00017826	529.2164424198986	18.866	0.46893	18.503	18.269	18.738	-0.36325					15	8	3	0	0	0	0.16306	1	6496	6496		45.7	22.963	1	18728000			2413	4731	1129	1148	2429	2429		102			-0.10772837844228889
AERYDDMAA	9	Oxidation (M)	_AERYDDM(Oxidation (M))AA_		AERYDDM(1)AA		AERYDDM(46)AA	0	0	1		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2164916992188	2	529.216388	1056.41822	0.33197	0.00017568	0.084358	4.4644E-05	0.41633	0.00022033	529.2162522653713	18.063	0.46839	18.139	17.997	18.465	0.076334					17	8	3	0	0	0	0.16285	1	6114	6114		45.74	21.95	1	6489900			2414	4731	1129	1148	2430	2430		102			-0.10772837844228889
AERYDDMAA	9	Oxidation (M)	_AERYDDM(Oxidation (M))AA_		AERYDDM(1)AA		AERYDDM(53)AA	0	0	1		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	529.216552734375	2	529.216388	1056.41822	0.33894	0.00017937	-0.19987	-0.00010577	0.13907	7.3598E-05	529.2163615126002	18.309	0.46534	18.128	17.942	18.407	-0.18052					15	8	3	0	0	0	0.12421	1	6136	6136		53.404	24.909	1	3381800			2415	4731	1129	1148	2431	2431		102			-0.10772837844228889
AESAERSGSP	10	Unmodified	_AESAERSGSP_					0	0	0			REV__ENST00000300006.8_2_16:15528491-15609213:+|nuORF	REV__ENST00000300006.8_2_16:15528491-15609213:+|nuORF	MSMS	HCT116MG_D190212_S2	2	495.7137756347656	2	495.727978	989.441402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.578	1	20.198	19.698	20.698	-0.37949								0	0	0	0.87399	1	7198	7198		19.257	1.1106	1		+		2416	14775	1130	1149	2432	2432					-0.05374075735232964
AESAERSGSP	10	Unmodified	_AESAERSGSP_					0	0	0			REV__ENST00000300006.8_2_16:15528491-15609213:+|nuORF	REV__ENST00000300006.8_2_16:15528491-15609213:+|nuORF	MSMS	HCT116MG_D190212_S3	3	495.7262878417969	2	495.727978	989.441402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.441	1	20.489	19.989	20.989	0.048107								0	0	0	0.82636	1	7070	7070		25.399	1.3787	1		+		2417	14775	1130	1149	2433	2433					-0.05374075735232964
AESAQTRVA	9	Unmodified	_AESAQTRVA_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	466.7437744140625	2	466.743431	931.472308	0.32799	0.00015309	-0.14215	-6.635E-05	0.18583	8.6736E-05	466.7433276077897	17.062	0.15652	17.062	16.942	17.098	0					4	2	2	0	0	0	0.082877	1	5794	5794		61.602	17.744	1	2003400			2418	1981	1131	1150	2434	2434					0.0038312236965794
AESAQTRVA	9	Unmodified	_AESAQTRVA_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	466.74365234375	2	466.743431	931.472308	0.21742	0.00010148	0.1395	6.511E-05	0.35692	0.00016659	466.74336082827983	17.458	0.47009	17.108	16.978	17.448	-0.34933					11	8	2	0	0	0	0.02327	1	5949	5949		93.166	26.709	1	23028000			2419	1981	1131	1150	2435	2435					0.0038312236965794
AESAQTRVA	9	Unmodified	_AESAQTRVA_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MSMS	HCT116MG_D190212_S3	3	466.7431945800781	2	466.743431	931.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.452	1	16.538	16.038	17.038	0.085424								0	0	0	0.067027	1	5460	5460		65.474	13.205	1				2420	1981	1131	1150	2436	2436					0.0038312236965794
AESAQTRVAP	10	Unmodified	_AESAQTRVAP_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MSMS	HCT116MG_D190212_S2	2	515.2702026367188	2	515.269813	1028.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.295	1	20.912	20.412	21.412	-0.38288								0	0	0	0.12168	1	7487	7487		78.06	21.883	1				2421	1981	1132	1151	2437	2437					0.011950804324442288
AESAQTRVAP	10	Unmodified	_AESAQTRVAP_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MSMS	HCT116MG_D190212_S3	3	515.2698364257812	2	515.269813	1028.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.588	1	20.622	20.122	21.122	0.034473								0	0	0	0.49957	1	7129	7129		47.732	20.103	1				2422	1981	1132	1151	2438	2438					0.011950804324442288
AESARRKIQ	9	Unmodified	_AESARRKIQ_					0	0	0			REV__ENST00000245865.10_2_17:61780961-61781237:-|nuORF	REV__ENST00000245865.10_2_17:61780961-61781237:-|nuORF	MSMS	HCT116MG_D190212_S4	4	529.8056640625	2	529.806897	1057.59924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.45	1	36.065	35.565	36.565	-0.38558								0	0	0	0.76575	1	13339	13339		15.847	3.3156	1		+		2423	14429	1133	1152	2439	2439					0.07274468314653859
AESATGKRA	9	Unmodified	_AESATGKRA_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000481928.1_1_2:232576581-232577558:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MSMS	HCT116MG_D190212_S2	2	445.7380676269531	2	445.738148	889.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.325	1	10.061	9.5608	10.561	-0.26472								0	0	0	0.76862	1	3260	3260		5.7319	0.50118	1				2424	5938	1134	1153	2440	2440					0.01259139715227775
AESDFLQT	8	Unmodified	_AESDFLQT_					0	0	0			REV__ENST00000476266.5_1_19:40748498-40748696:-|nuORF	REV__ENST00000476266.5_1_19:40748498-40748696:-|nuORF	MSMS	HCT116MG_D190212_S2	2	455.7352294921875	2	455.711265	909.407977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.873	1	24.497	23.997	24.997	-0.37521								0	0	0	0.52323	1	8932	8932		41.84	1.8823	1		+		2425	15915	1135	1154	2441	2441					-0.050350775071365206
AESDPSNAP	9	Unmodified	_AESDPSNAP_					0	0	0		ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	887.3734741210938	1	887.374117	886.36684	0.91378	0.00081087	-0.066394	-5.8916E-05	0.84739	0.00075195	887.3740109219766	17.503	0.73006	17.503	17.307	18.037	0					20	13	2	0	0	0	0.012168	1	5972	5972		108	26.107	1	3986600			2426	771	1136	1155	2442	2442					-0.08088838546620991
AESDPSNAP	9	Unmodified	_AESDPSNAP_					0	0	0		ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	887.3746948242188	1	887.374117	886.36684	0.79887	0.0007089	0.013365	1.186E-05	0.81224	0.00072076	887.3740593944394	17.767	0.94007	17.41	17.18	18.12	-0.35647					40	17	3	0	0	0	0.0060607	1	6050	6050		128.37	60.285	1	36131000			2427	771	1136	1155	2443	2443					-0.08088838546620991
AESDPSNAP	9	Unmodified	_AESDPSNAP_					0	0	0		ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	444.1904602050781	2	444.190697	886.36684	0.13829	6.1425E-05	0.1798	7.9865E-05	0.31808	0.00014129	444.190678767229	17.732	0.83548	17.376	17.18	18.015	-0.35647					32	15	3	0	0	0	0.023938	1	6057	6057		92.491	44.146	1	12478000			2428	771	1136	1155	2444	2444					-0.08088838546620991
AESDPSNAP	9	Unmodified	_AESDPSNAP_					0	0	0		ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	887.374267578125	1	887.374117	886.36684	0.53393	0.0004738	0.19853	0.00017617	0.73246	0.00064997	887.3742027491365	17.297	0.9883	17.379	17.171	18.159	0.082878					45	18	3	0	0	0	0.0090481	2	6007	5772;6007		115.69	58.221	1	22103000			2429	771	1136	1155	2445;2446	2446					-0.08088838546620991
AESDPSNAP	9	Unmodified	_AESDPSNAP_					0	0	0		ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	444.1906433105469	2	444.190697	886.36684	-0.16211	-7.2009E-05	0.29002	0.00012882	0.12791	5.6815E-05	444.1907173284145	17.322	0.88462	17.403	17.169	18.054	0.081358					27	16	2	0	0	0	0.020181	1	5793	5793		96.285	38.813	1	6552500			2430	771	1136	1155	2447	2447					-0.08088838546620991
AESDPSNAP	9	Unmodified	_AESDPSNAP_					0	0	0		ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant;nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	ELMO2|p.G335Wfs*48|1|0.2|ENSG00000062598|chr20:46375299-46375300|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	887.3748779296875	1	887.374117	886.36684	0.45971	0.00040793	0.28622	0.00025398	0.74592	0.00066191	887.37419233584	17.459	0.67519	17.288	17.069	17.744	-0.17047					23	12	2	0	0	0	0.020181	1	5770	5770		96.285	18.135	1	5293700			2431	771	1136	1155	2448	2448					-0.08088838546620991
AESEASSRVP	10	Unmodified	_AESEASSRVP_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7515869140625	2	516.751453	1031.48835	0.13362	6.9049E-05	0.31434	0.00016244	0.44796	0.00023149	516.7516036750621	21.644	0.52015	21.259	21.115	21.635	-0.38503					13	9	2	0	0	0	0.092421	1	7651	7651		75.571	16.892	1	10178000			2432	1230	1137	1156	2449	2449					-0.02613216184090561
AESEASSRVP	10	Unmodified	_AESEASSRVP_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	516.7515869140625	2	516.751453	1031.48835	0.10884	5.6242E-05	0.15729	8.128E-05	0.26613	0.00013752	516.7516151488692	21.07	0.73289	21.105	20.818	21.551	0.034473					21	13	2	0	0	0	0.019431	1	7328	7328		121.5	66.001	1	5534700			2433	1230	1137	1156	2450	2450					-0.02613216184090561
AESEEYDQV	9	Unmodified	_AESEEYDQV_					0	0	0		ENST00000511766.2_1_6:119215493-119222091:+|nuORF;ENSG00000111875|ENST00000229595|ASF1A	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	ENST00000511766.2_1_6:119215493-119222091:+|nuORF	MSMS	HCT116MG_D190212_S2	2	535.2212524414062	2	535.219651	1068.42475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.277	1	10.995	10.495	11.495	-0.28186								0	0	0	0.76954	1	3624	3624		0.45834	0	1				2434	2319	1138	1157	2451	2451					-0.10672621411868022
AESEGGYTTA	10	Unmodified	_AESEGGYTTA_					0	0	0		nc|ENSG00000137824|Q96TC7-2|RMDN3;ENSG00000137824|ENST00000338376|RMDN3	nc|ENSG00000137824|Q96TC7-2|RMDN3	nc|ENSG00000137824|Q96TC7-2|RMDN3	MULTI-MSMS	HCT116MG_D190212_S3	3	985.4108276367188	1	985.410896	984.40362	0.73167	0.00072099	-0.22683	-0.00022352	0.50484	0.00049748	985.4104639929833	21.349	0.31665	21.368	21.219	21.535	0.018446					7	5	2	0	0	0	0.30623	1	7455	7455		49.933	24.534	1	5084800			2435	3508	1139	1158	2452	2452					-0.08920586720728352
AESEGMRRA	9	Unmodified	_AESEGMRRA_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1;ENST00000513817.5_1_10:111637546-111643934:-|nuORF;ENST00000472336.5_1_10:111635284-111643934:-|nuORF;ENST00000488118.6_1_10:111637546-111648351:-|nuORF	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-MSMS	HCT116MG_D190212_S2	2	503.7405090332031	2	503.740365	1005.46618	0.3416	0.00017208	0.11681	5.8844E-05	0.45841	0.00023092	503.7402730552718	15.684	0.41768	15.35	15.219	15.637	-0.33451					14	7	2	0	0	0	0.053544	1	5230	5230		72.968	11.61	1	18850000			2436	2144	1140	1159	2453	2453					-0.036337191335064745
AESEGMRRA	9	Unmodified	_AESEGMRRA_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1;ENST00000513817.5_1_10:111637546-111643934:-|nuORF;ENST00000472336.5_1_10:111635284-111643934:-|nuORF;ENST00000488118.6_1_10:111637546-111648351:-|nuORF	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	503.740365	1005.46618	0.40716	0.0002051	-0.017928	-9.0309E-06	0.38924	0.00019607	503.7403110772662	15.506	0.15632	15.506	15.38	15.536	0	0.078096	-7.2867E-05	NaN	72.968	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1971500			2437	2144	1140	1159							-0.036337191335064745
AESEITIAP	9	Unmodified	_AESEITIAP_					0	0	0		nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10;ENST00000462327.1_1_10:120889049-120892241:+|nuORF;ENST00000498549.2_1_10:120879899-120896577:+|nuORF	nc|ENSG00000119979|Q8TCE6-2|DENND10	nc|ENSG00000119979|Q8TCE6-2|DENND10	MULTI-MSMS	HCT116MG_D190212_S2	2	930.4776000976562	1	930.477854	929.470577	1.0199	0.00094904	-0.33074	-0.00030774	0.68921	0.0006413	930.4773111344383	40.872	0.36207	40.803	40.622	40.984	-0.069626					12	6	3	0	0	0	0.019399	1	15430	15430		97.075	26.359	1	42580000			2438	2677	1141	1160	2454	2454					0.003020685610522378
AESEITIAP	9	Unmodified	_AESEITIAP_					0	0	0		nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10;ENST00000462327.1_1_10:120889049-120892241:+|nuORF;ENST00000498549.2_1_10:120879899-120896577:+|nuORF	nc|ENSG00000119979|Q8TCE6-2|DENND10	nc|ENSG00000119979|Q8TCE6-2|DENND10	MULTI-MSMS	HCT116MG_D190212_S3	3	930.4786987304688	1	930.477854	929.470577	1.0419	0.00096943	-0.22452	-0.00020891	0.81734	0.00076052	930.477345880857	41.061	0.46965	40.759	40.527	40.997	-0.30185					17	8	3	0	0	0	0.019399	1	15249	15249		97.075	29.731	1	15430000			2439	2677	1141	1160	2455	2455					0.003020685610522378
AESEKWQQA	9	Unmodified	_AESEKWQQA_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S1	1	538.9212646484375	2	538.753995	1075.49344	0.49507	0.00026672	0.2304	0.00012413	0.72548	0.00039085	538.7538212682495	23.915	0.31365	23.915	23.732	24.045	0					9	5	2	0	0	0	0.02327	2	8529	8529;8547		93.166	35.917	1	7930500			2440	6126	1142	1161	2456;2457	2456					-0.041289123214710344
AESENPPRA	9	Unmodified	_AESENPPRA_					0	0	0		ENSG00000105771|ENST00000270066|SMG9;nc|ENSG00000105771|Q9H0W8-2|SMG9	ENSG00000105771|ENST00000270066|SMG9	ENSG00000105771|ENST00000270066|SMG9	MULTI-MSMS	HCT116MG_D190212_S1	1	485.7330322265625	2	485.733063	969.451573	0.40051	0.00019454	-0.026854	-1.3044E-05	0.37366	0.0001815	485.7330541165778	17.176	0.20855	17.176	17.046	17.255	0					5	3	2	0	0	0	0.0096523	1	5840	5840		114.2	3.527	1	4584000			2441	2034	1143	1162	2458	2458					-0.03437468010008615
AESENPPRA	9	Unmodified	_AESENPPRA_					0	0	0		ENSG00000105771|ENST00000270066|SMG9;nc|ENSG00000105771|Q9H0W8-2|SMG9	ENSG00000105771|ENST00000270066|SMG9	ENSG00000105771|ENST00000270066|SMG9	MULTI-MSMS	HCT116MG_D190212_S2	2	485.73321533203125	2	485.733063	969.451573	0.18637	9.0525E-05	0.044848	2.1784E-05	0.23122	0.00011231	485.7330595189226	17.611	0.57461	17.255	17.023	17.598	-0.35603					21	10	3	0	0	0	0.0038512	1	5988	5988		152.89	30.707	1	30417000			2442	2034	1143	1162	2459	2459					-0.03437468010008615
AESENPPRA	9	Unmodified	_AESENPPRA_					0	0	0		ENSG00000105771|ENST00000270066|SMG9;nc|ENSG00000105771|Q9H0W8-2|SMG9	ENSG00000105771|ENST00000270066|SMG9	ENSG00000105771|ENST00000270066|SMG9	MULTI-MSMS	HCT116MG_D190212_S3	3	485.7331237792969	2	485.733063	969.451573	0.046591	2.2631E-05	0.32947	0.00016003	0.37606	0.00018267	485.7331552919899	16.698	0.36416	16.782	16.6	16.964	0.084467					14	6	3	0	0	0	0.14972	1	5581	5581		48.346	17.709	1	10749000			2443	2034	1143	1162	2460	2460					-0.03437468010008615
AESENPPRA	9	Unmodified	_AESENPPRA_					0	0	0		ENSG00000105771|ENST00000270066|SMG9;nc|ENSG00000105771|Q9H0W8-2|SMG9	ENSG00000105771|ENST00000270066|SMG9	ENSG00000105771|ENST00000270066|SMG9	MSMS	HCT116MG_D190212_S4	4	485.7333068847656	2	485.733063	969.451573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.975	1	16.809	16.309	17.309	-0.16664								0	0	0	0.53872	1	5597	5597		26.884	2.2098	1				2444	2034	1143	1162	2461	2461					-0.03437468010008615
AESGALIEA	9	Unmodified	_AESGALIEA_					0	0	0		nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-6|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-MSMS	HCT116MG_D190212_S3	3	860.4371337890625	1	860.435989	859.428712	0.75251	0.00064749	-0.054156	-4.6598E-05	0.69836	0.00060089	860.4359946676293	37.044	0.41644	36.743	36.613	37.029	-0.30113					14	7	3	0	0	0	0.057285	1	13724	13724		71.134	3.7897	1	10057000			2445	498	1144	1163	2462	2462					-0.0066248712747665195
AESGALIEA	9	Unmodified	_AESGALIEA_					0	0	0		nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-6|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-MATCH	HCT116MG_D190212_S2	2		1	860.435989	859.428712	0.74783	0.00064346	0.13905	0.00011964	0.88688	0.0007631	860.4359310540099	36.917	0.30973	36.802	36.602	36.912	-0.11478	0.038982	0.00015292	NaN	71.134	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12201000			2446	498	1144	1163							-0.0066248712747665195
AESGALIEA	9	Unmodified	_AESGALIEA_					0	0	0		nc|ENSG00000182973|Q9H9A5-4|CNOT10;CNOT10|p.P680Lfs*33|1|0.34|ENSG00000182973|chr3:32769917-32769917|C/-|frameshift_variant;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-6|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	860.435989	859.428712	0.66085	0.00056862	-0.039867	-3.4303E-05	0.62098	0.00053432	860.4358323789953	37.129	0.28611	36.744	36.639	36.925	-0.38486	-0.019199	-1.0232E-06	NaN	71.134	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3268000			2447	498	1144	1163							-0.0066248712747665195
AESGLLFY	8	Unmodified	_AESGLLFY_					0	0	0		LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	899.4515380859375	1	899.450911	898.443634	1.1026	0.00099177	-0.27072	-0.0002435	0.83192	0.00074827	899.4505605116755	56.161	0.25722	55.979	55.847	56.104	-0.18261					8	4	3	0	0	0	0.19622	1	21687	21687		74.396	11.003	1	45359000			2448	6086	1145	1164	2463	2463					-0.009649952594827482
AESGNLNTSP	10	Unmodified	_AESGNLNTSP_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MSMS	HCT116MG_D190212_S2	2	495.2306823730469	2	495.230353	988.446153	0.28289	0.0001401	0.13159	6.5169E-05	0.41449	0.00020527	495.23043547675536	23.085	0.46831	22.7	22.414	22.882	-0.3852					18	8	3	0	0	0	0.047039	1	8194	8194		89.401	20.296	1	25902000			2449	3624	1146	1165	2464	2464					-0.04853191592474104
AESGNLNTSP	10	Unmodified	_AESGNLNTSP_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MSMS	HCT116MG_D190212_S3	3	495.2306823730469	2	495.230353	988.446153	0.19004	9.4116E-05	-0.0239	-1.1836E-05	0.16614	8.2279E-05	495.230251079136	22.87	0.56021	22.851	22.491	23.051	-0.018869					14	10	2	0	0	0	0.43216	1	7982	7982		39.95	10.868	1	10026000			2450	3624	1146	1165	2465	2465					-0.04853191592474104
AESGQPVVP	9	Unmodified	_AESGQPVVP_					0	0	0		ENSG00000133393|ENST00000255759|CEP20	ENSG00000133393|ENST00000255759|CEP20	ENSG00000133393|ENST00000255759|CEP20	MULTI-MSMS	HCT116MG_D190212_S2	2	883.4522094726562	1	883.451973	882.444697	0.92027	0.00081302	-1.8272	-0.0016142	-0.90691	-0.00080121	883.4516963261772	31.23	0.77618	30.963	30.612	31.388	-0.26704					18	14	2	0	0	0	0.01389	1	11484	11484		103.75	48.975	1	10857000			2451	3238	1147	1166	2466	2466					-0.0012278089056962926
AESGTPSLTAA	11	Unmodified	_AESGTPSLTAA_					0	0	0		ENST00000515773.5_1_6:43152048-43164205:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;CUL9|p.R357Efs*138|1|0.33|ENSG00000112659|chr6:43186268-43186268|C/-|frameshift_variant;ENST00000451399.5_1_6:43152048-43155921:+|nuORF	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1004.4902954101562	1	1004.48948	1003.4822	0.78	0.0007835	-0.38318	-0.0003849	0.39682	0.0003986	1004.4887963080126	31.681	0.51766	31.432	31.25	31.768	-0.24883					14	9	3	0	0	0	0.19745	1	11698	11698		75.761	31.988	1	33953000			2452	2354	1148	1167	2467	2467					-0.019397344156232066
AESGTPSLTAA	11	Unmodified	_AESGTPSLTAA_					0	0	0		ENST00000515773.5_1_6:43152048-43164205:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;CUL9|p.R357Efs*138|1|0.33|ENSG00000112659|chr6:43186268-43186268|C/-|frameshift_variant;ENST00000451399.5_1_6:43152048-43155921:+|nuORF	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1004.4893798828125	1	1004.48948	1003.4822	0.52191	0.00052426	0.060145	6.0415E-05	0.58206	0.00058467	1004.4894426448408	31.762	0.31244	31.492	31.326	31.638	-0.27028					13	5	3	0	0	0	0.034401	1	11607	11607		110.67	64.975	1	22664000			2453	2354	1148	1167	2468	2468					-0.019397344156232066
AESGTPSLTAA	11	Unmodified	_AESGTPSLTAA_					0	0	0		ENST00000515773.5_1_6:43152048-43164205:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;CUL9|p.R357Efs*138|1|0.33|ENSG00000112659|chr6:43186268-43186268|C/-|frameshift_variant;ENST00000451399.5_1_6:43152048-43155921:+|nuORF	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7491760253906	2	502.748379	1003.4822	0.29392	0.00014777	-1.5339	-0.00077118	-1.24	-0.00062341	502.7478384959487	32.09	0.6242	31.812	31.317	31.942	-0.27841					14	11	2	0	0	0	0.57532	1	11630	11630		38.176	11.907	1	8508000			2454	2354	1148	1167	2469	2469					-0.019397344156232066
AESGTPSLTAA	11	Unmodified	_AESGTPSLTAA_					0	0	0		ENST00000515773.5_1_6:43152048-43164205:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;CUL9|p.R357Efs*138|1|0.33|ENSG00000112659|chr6:43186268-43186268|C/-|frameshift_variant;ENST00000451399.5_1_6:43152048-43155921:+|nuORF	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1004.4910278320312	1	1004.48948	1003.4822	0.51164	0.00051393	-0.065586	-6.588E-05	0.44605	0.00044805	1004.4899222886874	31.883	0.31142	31.507	31.33	31.642	-0.37529					11	5	3	0	0	0	0.13847	1	11577	11577		82.529	38.757	1	9310600			2455	2354	1148	1167	2470	2470					-0.019397344156232066
AESHIEIY	8	Unmodified	_AESHIEIY_					0	0	0		ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	ENSG00000171246|ENST00000306773|NPTX1	MULTI-MSMS	HCT116MG_D190212_S2	2	481.7344055175781	2	481.234907	960.455261	0.059255	2.8515E-05	-0.97645	-0.0004699	-0.91719	-0.00044138	481.2328909111819	10.423	0.6511	10.153	9.9231	10.574	-0.27021					60	30	3	0	0	0	0.8506	1	3248	3248		5.2307	0	1	596210			2456	5184	1149	1168	2471	2471					-0.026547982361535105
AESHKDAVE	9	Unmodified	_AESHKDAVE_					0	0	0		nc|ENSG00000261371|P16284-4|PECAM1	nc|ENSG00000261371|P16284-4|PECAM1	nc|ENSG00000261371|P16284-4|PECAM1	MULTI-MSMS	HCT116MG_D190212_S2	2	493.2325744628906	2	493.232896	984.451239	0.29266	0.00014435	-0.43498	-0.00021455	-0.14232	-7.0195E-05	493.23256988189496	26.977	0.31613	26.625	26.45	26.766	-0.35254					10	5	3	0	0	0	0.24895	1	9813	9813		36.127	13.391	1	11938000			2457	9657	1150	1169	2472	2472					-0.04160887729858587
AESHKDAVE	9	Unmodified	_AESHKDAVE_					0	0	0		nc|ENSG00000261371|P16284-4|PECAM1	nc|ENSG00000261371|P16284-4|PECAM1	nc|ENSG00000261371|P16284-4|PECAM1	MULTI-MSMS	HCT116MG_D190212_S4	4	493.2328796386719	2	493.232896	984.451239	0.23852	0.00011765	0.20319	0.00010022	0.44171	0.00021787	493.2328781617048	26.95	0.20769	26.639	26.535	26.742	-0.3114					7	3	3	0	0	0	0.23138	1	9645	9645		37.974	5.1883	1	3013600			2458	9657	1150	1169	2473	2473					-0.04160887729858587
AESKASLAA	9	Unmodified	_AESKASLAA_					0	0	0		ENSG00000159256|ENST00000400485|MORC3;ENST00000492336.5_1_21:37692562-37711220:+|nuORF	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	HCT116MG_D190212_S2	2	424.22943115234375	2	424.229625	846.444697	0.074105	3.1438E-05	-0.23532	-9.983E-05	-0.16122	-6.8393E-05	424.22946538444194	20.955	0.26004	20.572	20.443	20.703	-0.38288					7	4	2	0	0	0	0.07468	1	7374	7374		63.227	17.528	1	19792000			2459	4407	1151	1170	2474	2474					0.01533219109410311
AESKASLAA	9	Unmodified	_AESKASLAA_					0	0	0		ENSG00000159256|ENST00000400485|MORC3;ENST00000492336.5_1_21:37692562-37711220:+|nuORF	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	HCT116MG_D190212_S2	2	847.4526977539062	1	847.451973	846.444697	0.72274	0.00061249	-0.23863	-0.00020223	0.48411	0.00041026	847.4518460321895	20.955	0.20827	20.572	20.494	20.703	-0.38288					5	3	2	0	0	0	0.026272	1	7378	7378		90.135	33.958	1	7376200			2460	4407	1151	1170	2475	2475					0.01533219109410311
AESKASLAA	9	Unmodified	_AESKASLAA_					0	0	0		ENSG00000159256|ENST00000400485|MORC3;ENST00000492336.5_1_21:37692562-37711220:+|nuORF	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	HCT116MG_D190212_S3	3	424.2298889160156	2	424.229625	846.444697	0.027373	1.1612E-05	0.27972	0.00011867	0.30709	0.00013028	424.2296851048217	20.133	0.41654	20.181	20.051	20.468	0.048107					12	7	3	0	0	0	0.045679	1	6948	6948		76.825	15.467	1	13078000			2461	4407	1151	1170	2476	2476					0.01533219109410311
AESKASLAA	9	Unmodified	_AESKASLAA_					0	0	0		ENSG00000159256|ENST00000400485|MORC3;ENST00000492336.5_1_21:37692562-37711220:+|nuORF	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	424.229625	846.444697	0.19539	8.2888E-05	-0.25963	-0.00011014	-0.064242	-2.7253E-05	424.22945237272717	20.476	0.31206	20.274	20.144	20.456	-0.20133	-0.068293	-0.00013965	NaN	76.825	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4952000			2462	4407	1151	1170							0.01533219109410311
AESKSLLKA	9	Unmodified	_AESKSLLKA_					0	0	0		ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7820739746094	2	473.782025	945.549496	0.3502	0.00016592	0.13652	6.4682E-05	0.48673	0.0002306	473.781998988992	25.165	0.2602	24.79	24.66	24.92	-0.37521					7	4	2	0	0	0	0.011034	1	9061	9061		110.79	60.86	1	33296000			2463	5704	1152	1171	2477	2477					0.07454340586002672
AESKSLLKA	9	Unmodified	_AESKSLLKA_					0	0	0		ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	MULTI-MSMS	HCT116MG_D190212_S3	3	473.7818298339844	2	473.782025	945.549496	0.15992	7.5765E-05	-0.092917	-4.4022E-05	0.066998	3.1743E-05	473.78202484622034	24.46	0.26025	24.377	24.237	24.497	-0.083694					11	4	3	0	0	0	0.060947	1	8702	8702		69.338	29.381	1	8972100			2464	5704	1152	1171	2478	2478					0.07454340586002672
AESKSLLKA	9	Unmodified	_AESKSLLKA_					0	0	0		ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	MULTI-MSMS	HCT116MG_D190212_S4	4	473.7820129394531	2	473.782025	945.549496	0.53029	0.00025124	-0.4077	-0.00019316	0.12259	5.8079E-05	473.7817243984902	24.844	0.20773	24.575	24.445	24.653	-0.26881					5	3	2	0	0	0	0.23993	1	8786	8786		37.075	9.4458	1	2045200			2465	5704	1152	1171	2479	2479					0.07454340586002672
AESKVSVAV	9	Unmodified	_AESKVSVAV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;ENST00000550629.1_1_12:46313059-46318516:-|nuORF;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	HCT116MG_D190212_S1	1	445.2531433105469	2	445.2531	888.491647	0.32517	0.00014478	-0.096192	-4.283E-05	0.22898	0.00010195	445.2530076323206	28.772	0.26157	28.772	28.641	28.903	0					7	4	2	0	0	0	0.077982	1	10514	10514		62.573	24.599	1	12510000			2466	3612	1153	1172	2480	2480					0.04294078660575451
AESKVSVAV	9	Unmodified	_AESKVSVAV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;ENST00000550629.1_1_12:46313059-46318516:-|nuORF;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	HCT116MG_D190212_S2	2	445.2529602050781	2	445.2531	888.491647	0.2871	0.00012783	-0.016427	-7.3143E-06	0.27067	0.00012052	445.25296565520733	29.306	0.41029	28.99	28.812	29.222	-0.31613					12	7	3	0	0	0	0.026272	1	10732	10732		90.135	31.456	1	54332000			2467	3612	1153	1172	2481	2481					0.04294078660575451
AESKVSVAV	9	Unmodified	_AESKVSVAV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;ENST00000550629.1_1_12:46313059-46318516:-|nuORF;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	HCT116MG_D190212_S3	3	445.2533264160156	2	445.2531	888.491647	0.23214	0.00010336	-0.030502	-1.3581E-05	0.20164	8.9781E-05	445.25303070685464	29.243	0.46886	29.021	28.89	29.359	-0.22195					14	8	3	0	0	0	0.032914	1	10623	10623		83.429	15.348	1	21117000			2468	3612	1153	1172	2482	2482					0.04294078660575451
AESKVSVAV	9	Unmodified	_AESKVSVAV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;ENST00000550629.1_1_12:46313059-46318516:-|nuORF;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	HCT116MG_D190212_S4	4	445.2529602050781	2	445.2531	888.491647	0.26299	0.0001171	-0.079397	-3.5352E-05	0.18359	8.1744E-05	445.25303439657165	29.446	0.36355	29.096	28.825	29.189	-0.34921					8	6	2	0	0	0	0.10482	1	10643	10643		57.249	13.477	1	8242200			2469	3612	1153	1172	2483	2483					0.04294078660575451
AESLGQYAA	9	Unmodified	_AESLGQYAA_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	909.4317016601562	1	909.431238	908.423961	0.93906	0.00085401	-0.31204	-0.00028378	0.62702	0.00057023	909.430681861376	33.322	0.25867	33.322	33.193	33.452	0					7	4	2	0	0	0	0.020181	1	12356	12356		96.285	50.264	1	9312300			2470	2284	1154	1173	2484	2484					-0.03391371270242871
AESLGQYAA	9	Unmodified	_AESLGQYAA_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	909.4313354492188	1	909.431238	908.423961	1.0212	0.0009287	-0.58334	-0.0005305	0.43785	0.0003982	909.4308405724954	33.541	0.3597	33.348	33.123	33.482	-0.19296					13	6	3	0	0	0	0.027492	1	12446	12446		88.904	20.823	1	78437000			2471	2284	1154	1173	2485	2485					-0.03391371270242871
AESLGQYAA	9	Unmodified	_AESLGQYAA_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	455.2193603515625	2	455.219257	908.423961	0.45869	0.0002088	0.079488	3.6185E-05	0.53818	0.00024499	455.21930411197405	33.513	0.25631	33.32	33.174	33.43	-0.19297					8	4	2	0	0	0	0.057285	1	12463	12463		71.134	25.113	1	12435000			2472	2284	1154	1173	2486	2486					-0.03391371270242871
AESLGQYAA	9	Unmodified	_AESLGQYAA_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	909.4324340820312	1	909.431238	908.423961	0.69584	0.00063282	-0.0014871	-1.3524E-06	0.69436	0.00063147	909.4312494510909	33.721	0.46724	33.431	33.252	33.719	-0.29013					17	8	3	0	0	0	0.027442	1	12371	12371		88.954	20.873	1	50908000			2473	2284	1154	1173	2487	2487					-0.03391371270242871
AESLGQYAA	9	Unmodified	_AESLGQYAA_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	455.21905517578125	2	455.219257	908.423961	0.26639	0.00012127	-0.39287	-0.00017884	-0.12648	-5.7578E-05	455.2190572670598	33.76	0.36304	33.47	33.252	33.615	-0.29013					9	6	2	0	0	0	0.035914	1	12394	12394		81.613	43.639	1	6517900			2474	2284	1154	1173	2488	2488					-0.03391371270242871
AESLGQYAA	9	Unmodified	_AESLGQYAA_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;NAA25|p.V720Gfs*6|1|0.14|ENSG00000111300|chr12:112043716-112043717|-/C|frameshift_variant;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;NAA25|p.E958Sfs*3|1|0.51|ENSG00000111300|chr12:112029578-112029578|C/-|frameshift_variant;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	910.43359375	1	909.431238	908.423961	0.91085	0.00082835	-0.18302	-0.00016644	0.72783	0.00066191	909.4312137733199	33.771	0.35407	33.387	33.215	33.569	-0.38426					13	6	3	0	0	0	0.14972	1	12295	12295		48.346	21.462	1	18802000			2475	2284	1154	1173	2489	2489					-0.03391371270242871
AESLHSQPP	9	Unmodified	_AESLHSQPP_					0	0	0		nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7;nc|ENSG00000274211|O14512-2|SOCS7	nc|ENSG00000274211|O14512|SOCS7	nc|ENSG00000274211|O14512|SOCS7	MULTI-MSMS	HCT116MG_D190212_S1	1	483.2376403808594	2	483.237981	964.461409	0.23903	0.00011551	-0.84155	-0.00040667	-0.60252	-0.00029116	483.23732351542094	21.359	0.31678	21.359	21.173	21.489	0					8	5	2	0	0	0	0.12994	1	7519	7519		52.268	17.867	1	3039900			2476	6675	1155	1174	2490	2490					-0.022242800046228695
AESLHSQPP	9	Unmodified	_AESLHSQPP_					0	0	0		nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7;nc|ENSG00000274211|O14512-2|SOCS7	nc|ENSG00000274211|O14512|SOCS7	nc|ENSG00000274211|O14512|SOCS7	MULTI-MSMS	HCT116MG_D190212_S2	2	483.23785400390625	2	483.237981	964.461409	0.062449	3.0178E-05	0.17507	8.4602E-05	0.23752	0.00011478	483.2379800143073	21.771	0.57219	21.386	21.167	21.739	-0.38503					23	10	3	0	0	0	0.0053819	1	7680	7680		134.3	41.642	1	22275000			2477	6675	1155	1174	2491	2491					-0.022242800046228695
AESLHSQPP	9	Unmodified	_AESLHSQPP_					0	0	0		nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7;nc|ENSG00000274211|O14512-2|SOCS7	nc|ENSG00000274211|O14512|SOCS7	nc|ENSG00000274211|O14512|SOCS7	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2373352050781	2	483.237981	964.461409	0.080892	3.909E-05	0.079359	3.8349E-05	0.16025	7.7439E-05	483.2379046423705	21.191	0.89254	21.21	20.855	21.747	0.018446					27	16	2	0	0	0	0.084109	1	7335	7335		61.357	21.408	1	9846300			2478	6675	1155	1174	2492	2492					-0.022242800046228695
AESLHSQPP	9	Unmodified	_AESLHSQPP_					0	0	0		nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7;nc|ENSG00000274211|O14512-2|SOCS7	nc|ENSG00000274211|O14512|SOCS7	nc|ENSG00000274211|O14512|SOCS7	MULTI-MSMS	HCT116MG_D190212_S4	4	483.23809814453125	2	483.237981	964.461409	0.1626	7.8577E-05	-0.31336	-0.00015143	-0.15075	-7.285E-05	483.23781460947697	21.446	0.57112	21.228	21.01	21.581	-0.21832					17	10	2	0	0	0	0.12994	1	7409	7409		52.268	10.429	1	4318000			2479	6675	1155	1174	2493	2493					-0.022242800046228695
AESLLVTKVKK	11	Unmodified	_AESLLVTKVKK_					0	0	0			REV__JAKMIP3|p.E129K|1|0.08|ENSG00000188385|chr10:132117326-132117326|G/A|missense_variant	REV__JAKMIP3|p.E129K|1|0.08|ENSG00000188385|chr10:132117326-132117326|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	608.385498046875	2	608.387188	1214.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.621	1	44.313	43.813	44.813	-0.30759								0	0	0	0.95954	1	16686	16686		1.3295	0	1		+		2480	16914	1156	1175	2494	2494					0.16103378188176976
AESLQPVAA	9	Unmodified	_AESLQPVAA_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	885.4686279296875	1	885.467623	884.460347	0.68965	0.00061066	0.92026	0.00081486	1.6099	0.0014255	885.4681209799797	31.831	0.26089	31.831	31.7	31.961	0					6	4	2	0	0	0	0.041798	1	11754	11754		78.728	17.371	1	4902000			2481	991	1157	1176	2495	2495					0.013495056264673622
AESLQPVAA	9	Unmodified	_AESLQPVAA_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	885.4679565429688	1	885.467623	884.460347	0.94712	0.00083865	0.073482	6.5066E-05	1.0206	0.00090371	885.4674386716059	32.043	0.31099	31.813	31.631	31.942	-0.23009					11	5	3	0	0	0	0.0038833	1	11845	11845		152.41	59.59	1	39579000			2482	991	1157	1176	2496	2496					0.013495056264673622
AESLQPVAA	9	Unmodified	_AESLQPVAA_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	HCT116MG_D190212_S3	3	885.4679565429688	1	885.467623	884.460347	0.64529	0.00057139	0.088178	7.8079E-05	0.73347	0.00064947	885.4676484347599	32.09	0.36383	31.812	31.63	31.994	-0.27841					13	6	3	0	0	0	0.0038833	1	11754	11754		152.41	63.509	1	29817000			2483	991	1157	1176	2497	2497					0.013495056264673622
AESLQPVAA	9	Unmodified	_AESLQPVAA_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	HCT116MG_D190212_S3	3	443.2611999511719	2	443.23745	884.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.069	1	31.791	31.291	32.291	-0.27841								0	0	0	0.21855	1	11740	11740		46.021	0	1				2484	991	1157	1176	2498	2498					0.013495056264673622
AESLQPVAA	9	Unmodified	_AESLQPVAA_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	HCT116MG_D190212_S4	4	885.4679565429688	1	885.467623	884.460347	0.67215	0.00059516	0.17457	0.00015457	0.84671	0.00074974	885.4674069209813	32.251	0.31135	31.875	31.694	32.005	-0.37529					11	5	3	0	0	0	0.0038833	1	11742	11742		152.41	63.509	1	11280000			2485	991	1157	1176	2499	2499					0.013495056264673622
AESLSSGVAP	10	Unmodified	_AESLSSGVAP_					0	0	0			REV__nc|ENSG00000101057|P10244-2|MYBL2	REV__nc|ENSG00000101057|P10244-2|MYBL2	MULTI-MSMS	HCT116MG_D190212_S3	3	459.2318115234375	2	459.232364	916.450176	0.32925	0.0001512	-0.57295	-0.00026312	-0.24369	-0.00011191	459.2319758543663	30.683	0.33278	30.422	30.324	30.656	-0.26071					8	6	2	0	0	0	0.61891	1	11187	11187		26.884	0	1	6628900	+		2486	11112	1158	1177	2500	2500					-0.011391020987616685
AESLTLRGP	9	Unmodified	_AESLTLRGP_					0	0	0			REV__ENSG00000132702|ENST00000255039|HAPLN2	REV__ENSG00000132702|ENST00000255039|HAPLN2	MULTI-MSMS	HCT116MG_D190212_S3	3	472.2641296386719	2	472.263999	942.513445	-0.12488	-5.8978E-05	0.54947	0.0002595	0.42459	0.00020052	472.26412241097074	36.077	0.36399	35.776	35.626	35.99	-0.30042					9	6	2	0	0	0	0.049545	1	13336	13336		74.929	3.7954	1	6131900	+		2487	12000	1159	1178	2501	2501					0.03988883409135724
AESLVRNLQW	10	Unmodified	_AESLVRNLQW_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MSMS	HCT116MG_D190212_S1	1	608.3255615234375	2	608.327662	1214.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.49	1	27.49	26.99	27.99	0								0	0	0	0.88085	1	9977	9977		18.373	3.1246	1				2488	5239	1160	1179	2502	2502					0.042036042833160536
AESMATHHLP	10	Unmodified	_AESMATHHLP_					0	0	0		nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	MULTI-MSMS	HCT116MG_D190212_S3	3	547.2593994140625	2	547.258391	1092.50223	0.55645	0.00030452	0.53412	0.0002923	1.0906	0.00059682	547.2587651959124	25.961	0.93793	25.833	25.65	26.588	-0.12795					26	17	2	0	0	0	0.34996	2	9283	9283;9347		53.833	34.471	1	6706200			2489	4108	1161	1180	2503;2504	2503					-0.04032261956649563
AESNFRIYP	9	Unmodified	_AESNFRIYP_					0	0	0		ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MSMS	HCT116MG_D190212_S2	2	548.775146484375	2	548.774731	1095.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.656	1	42.586	42.086	43.086	-0.069984								0	0	0	0.22299	1	16151	16151		45.7	7.7256	1				2490	6622	1162	1181	2505	2505					-0.009037315621299058
AESNFRIYP	9	Unmodified	_AESNFRIYP_					0	0	0		ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MSMS	HCT116MG_D190212_S3	3	548.822509765625	2	548.774731	1095.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.811	1	42.506	42.006	43.006	-0.30472								0	0	0	0.019309	1	15959	15959		92.653	46.954	1				2491	6622	1162	1181	2506	2506					-0.009037315621299058
AESNFRIYP	9	Unmodified	_AESNFRIYP_					0	0	0		ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MSMS	HCT116MG_D190212_S3	3	548.7747802734375	2	548.774731	1095.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.863	1	42.558	42.058	43.058	-0.30472								0	0	0	0.022654	1	15980	15980		89.401	45.628	1				2492	6622	1162	1181	2507	2507					-0.009037315621299058
AESPASRQA	9	Unmodified	_AESPASRQA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	458.7275695800781	2	458.727781	915.441008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.114	1	15.114	14.614	15.614	0								0	0	0	0.014432	1	4998	4998		100.09	14.734	1				2493	4922	1163	1182	2508	2508					-0.02009450664434098
AESPASRQA	9	Unmodified	_AESPASRQA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	458.72784423828125	2	458.727781	915.441008	0.020609	9.4541E-06	0.30651	0.0001406	0.32712	0.00015006	458.7278484769765	15.04	0.78211	14.713	14.341	15.123	-0.32684					41	14	4	0	0	0	0.037825	2	4895	4895;4993		80.676	11.571	1	28799000			2494	4922	1163	1182	2509;2510	2509					-0.02009450664434098
AESPASRQA	9	Unmodified	_AESPASRQA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	916.4481811523438	1	916.448285	915.441008	0.54813	0.00050233	-0.32874	-0.00030127	0.2194	0.00020106	916.4479148306797	15.023	0.36472	14.696	14.446	14.81	-0.32684					11	6	2	0	0	0	0.0038512	1	4950	4950		152.89	53.087	1	2223000			2495	4922	1163	1182	2511	2511					-0.02009450664434098
AESPASRQAA	10	Unmodified	_AESPASRQAA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	494.246337890625	2	494.246338	986.478122	0.38589	0.00019072	-0.12108	-5.9844E-05	0.26481	0.00013088	494.24624737187014	15.353	0.36529	15.353	15.118	15.484	0					10	6	2	0	0	0	0.036884	1	5096	5096		96.936	36.862	1	6269500			2496	4922	1164	1183	2512	2512					-0.015657791186754366
AESPASRQAA	10	Unmodified	_AESPASRQAA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	494.74853515625	2	494.246338	986.478122	0.18688	9.2365E-05	-0.069906	-3.4551E-05	0.11697	5.7814E-05	494.2461976139784	12.148	0.26532	11.859	11.717	11.982	-0.28953					14	8	2	0	0	0	0.65928	1	3955	3955		23.79	4.5328	1	928810			2497	4922	1164	1183	2513	2513					-0.015657791186754366
AESPASRQAA	10	Unmodified	_AESPASRQAA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2464294433594	2	494.246338	986.478122	0.19015	9.3981E-05	0.10558	5.218E-05	0.29573	0.00014616	494.2463266081216	15.424	0.9385	15.097	14.758	15.697	-0.32684					41	17	4	0	0	0	0.010309	2	5103	5079;5103		147.24	83.28	1	50102000			2498	4922	1164	1183	2514;2515	2515					-0.015657791186754366
AESPASRQAA	10	Unmodified	_AESPASRQAA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	987.4871215820312	1	987.485399	986.478122	0.68869	0.00068007	-0.083077	-8.2038E-05	0.60561	0.00059803	987.4853490013336	15.424	0.26044	15.097	14.915	15.175	-0.32684					6	4	2	0	0	0	0.00046105	1	5128	5128		187.14	97.742	1	2358800			2499	4922	1164	1183	2516	2516					-0.015657791186754366
AESPASRQAAA	11	Unmodified	_AESPASRQAAA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	529.7651977539062	2	529.764894	1057.51524	0.31746	0.00016818	-0.33705	-0.00017856	-0.019595	-1.0381E-05	529.7647989015554	15.856	0.31227	15.856	15.588	15.9	0					7	5	2	0	0	0	0.69738	1	5314	5314		22.775	6.6259	1	1458400			2500	4922	1165	1184	2517	2517					-0.011221075729281438
AESPASRQAAA	11	Unmodified	_AESPASRQAAA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.765625	2	529.764894	1057.51524	0.34846	0.0001846	0.28639	0.00015172	0.63485	0.00033632	529.7648712679387	16.064	0.41778	15.73	15.48	15.898	-0.33451					16	7	3	0	0	0	0.0040483	1	5363	5363		143.21	79.253	1	15965000			2501	4922	1165	1184	2518	2518					-0.011221075729281438
AESPASRQAAA	11	Unmodified	_AESPASRQAAA_					0	0	0		GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant;nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	GATAD2A|p.P366Tfs*74|1|0.48|ENSG00000167491|chr19:19498606-19498607|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	529.7650756835938	2	529.764894	1057.51524	0.47214	0.00025012	-0.1389	-7.3582E-05	0.33324	0.00017654	529.7647971998066	15.193	0.41573	15.276	14.986	15.402	0.083271					18	7	3	0	0	0	0.37659	1	4915	4915		57.108	27.267	1	4162800			2502	4922	1165	1184	2519	2519					-0.011221075729281438
AESPFGVGA	9	Unmodified	_AESPFGVGA_					0	0	0		ENST00000457010.6_2_16:31477148-31477304:+|nuORF;nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5	ENST00000457010.6_2_16:31477148-31477304:+|nuORF	ENST00000457010.6_2_16:31477148-31477304:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	834.399169921875	1	834.399209	833.391933	0.96954	0.00080898	0.13607	0.00011354	1.1056	0.00092252	834.3996093055115	41.888	0.31276	41.888	41.706	42.019	0					8	5	2	0	0	0	0.050578	1	15816	15816		74.423	21.73	1	7400600			2503	3682	1166	1185	2520	2520					-0.031427389533746464
AESPFGVGA	9	Unmodified	_AESPFGVGA_					0	0	0		ENST00000457010.6_2_16:31477148-31477304:+|nuORF;nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5	ENST00000457010.6_2_16:31477148-31477304:+|nuORF	ENST00000457010.6_2_16:31477148-31477304:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	834.4000244140625	1	834.399209	833.391933	0.84121	0.00070191	0.31626	0.00026388	1.1575	0.00096579	834.3993768206743	41.955	0.36306	41.887	41.653	42.016	-0.068199					10	6	2	0	0	0	0.011506	1	15851	15851		109.63	53.088	1	59521000			2504	3682	1166	1185	2521	2521					-0.031427389533746464
AESPFGVGA	9	Unmodified	_AESPFGVGA_					0	0	0		ENST00000457010.6_2_16:31477148-31477304:+|nuORF;nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5	ENST00000457010.6_2_16:31477148-31477304:+|nuORF	ENST00000457010.6_2_16:31477148-31477304:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	834.4000244140625	1	834.399209	833.391933	0.80477	0.0006715	0.1352	0.00011281	0.93998	0.00078431	834.3991306254244	42.158	0.36378	41.855	41.676	42.04	-0.30348					15	6	3	0	0	0	0.0082751	1	15680	15680		117.6	64.906	1	18478000			2505	3682	1166	1185	2522	2522					-0.031427389533746464
AESPFGVGA	9	Unmodified	_AESPFGVGA_					0	0	0		ENST00000457010.6_2_16:31477148-31477304:+|nuORF;nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5	ENST00000457010.6_2_16:31477148-31477304:+|nuORF	ENST00000457010.6_2_16:31477148-31477304:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	834.3995361328125	1	834.399209	833.391933	0.76198	0.00063579	0.39281	0.00032776	1.1548	0.00096355	834.3991427474172	42.24	0.41451	41.865	41.632	42.046	-0.37565					11	7	2	0	0	0	0.035402	1	15525	15525		81.864	22.069	1	4957300			2506	3682	1166	1185	2523	2523					-0.031427389533746464
AESPGFSQA	9	Unmodified	_AESPGFSQA_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;FCHSD2|p.R701G|1|0.27|ENSG00000137478|chr11:72840915-72840915|T/C|missense_variant	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-MSMS	HCT116MG_D190212_S3	3	447.2034606933594	2	447.203607	892.392661	0.23787	0.00010638	0.057779	2.5839E-05	0.29565	0.00013222	447.20359625754924	28.53	0.36469	28.324	28.125	28.489	-0.20593					16	6	3	0	0	0	0.041798	1	10327	10327		78.728	28.795	1	12935000			2507	3480	1167	1186	2524	2524					-0.05783944304334909
AESPGFSQA	9	Unmodified	_AESPGFSQA_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;FCHSD2|p.R701G|1|0.27|ENSG00000137478|chr11:72840915-72840915|T/C|missense_variant	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-MSMS	HCT116MG_D190212_S3	3	893.4016723632812	1	893.399938	892.392661	1.0951	0.0009784	-0.31531	-0.0002817	0.77983	0.0006967	893.3996848347188	28.546	0.41664	28.34	28.125	28.541	-0.20593					11	7	2	0	0	0	0.030039	1	10328	10328		86.332	34.063	1	7657000			2508	3480	1167	1186	2525	2525					-0.05783944304334909
AESPGFSQA	9	Unmodified	_AESPGFSQA_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;FCHSD2|p.R701G|1|0.27|ENSG00000137478|chr11:72840915-72840915|T/C|missense_variant	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-MSMS	HCT116MG_D190212_S4	4	447.7049560546875	2	447.203607	892.392661	0.26279	0.00011752	0.12698	5.6785E-05	0.38977	0.00017431	447.20343037241236	28.637	0.25938	28.304	28.167	28.426	-0.33272					10	4	3	0	0	0	0.17622	1	10320	10320		43.772	11.467	1	5743900			2509	3480	1167	1186	2526	2526					-0.05783944304334909
AESPGFSQA	9	Unmodified	_AESPGFSQA_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;FCHSD2|p.R701G|1|0.27|ENSG00000137478|chr11:72840915-72840915|T/C|missense_variant	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	447.203607	892.392661	0.13582	6.0738E-05	-0.2562	-0.00011457	-0.12038	-5.3836E-05	447.2034506480726	28.54	0.20609	28.21	28.029	28.236	-0.32987	-0.069386	-0.00023883	NaN	78.728	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13665000			2510	3480	1167	1186							-0.05783944304334909
AESPGRPPP	9	Unmodified	_AESPGRPPP_					0	0	0		TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant	TNS2|p.K660Nfs*96|1|0.2|ENSG00000111077|chr12:53059615-53059615|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	454.2354736328125	2	454.235242	906.45593	0.061665	2.801E-05	-0.61288	-0.00027839	-0.55121	-0.00025038	454.2349057706284	17.045	0.78037	17.129	16.6	17.381	0.084467					24	14	2	0	0	0	0.097615	1	5577	5577		58.679	12.658	1	1377300			2511	2272	1168	1187	2527	2527					-0.0010395879644420347
AESPNHVVA	9	Unmodified	_AESPNHVVA_					0	0	0		ENST00000525968.1_1_11:73984627-74015361:-|nuORF;ENSG00000149380|ENST00000331597|P4HA3;nc|ENSG00000149380|Q7Z4N8-3|P4HA3	ENST00000525968.1_1_11:73984627-74015361:-|nuORF	ENST00000525968.1_1_11:73984627-74015361:-|nuORF	MSMS	HCT116MG_D190212_S3	3	462.23260498046875	2	462.232699	922.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.111	1	21.145	20.645	21.645	0.034473								0	0	0	0.14112	1	7340	7340		51.63	20.993	1				2512	4059	1169	1188	2528	2528					-0.013482626590530344
AESPRGWEA	9	Unmodified	_AESPRGWEA_					0	0	0		ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MSMS	HCT116MG_D190212_S4	4	501.6783752441406	2	501.735606	1001.45666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.78	1	17.605	17.105	18.105	-0.17501								0	0	0	0.74083	1	5923	5923		17.113	1.2657	1				2513	9084	1170	1189	2529	2529					-0.044011641473844065
AESPSWTP	8	Unmodified	_AESPSWTP_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-MSMS	HCT116MG_D190212_S3	3	874.393798828125	1	874.394124	873.386848	0.81512	0.00071274	-0.20307	-0.00017757	0.61205	0.00053517	874.3936972799337	39.33	0.4243	39.029	38.768	39.192	-0.30137					12	7	2	0	0	0	0.070772	1	14602	14602		101.72	27.326	1	3952900			2514	1462	1171	1190	2530	2530					-0.054910428159928415
AESPTSPVT	9	Unmodified	_AESPTSPVT_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	888.4312744140625	1	888.430903	887.423627	0.85495	0.00075956	-0.24494	-0.00021761	0.61001	0.00054195	888.4305526205088	24.542	0.3658	24.542	24.412	24.778	0					11	6	3	0	0	0	0.0057285	1	8796	8796		131.27	42.364	1	16176000			2515	3119	1172	1191	2531	2531					-0.024587909901015337
AESPTSPVT	9	Unmodified	_AESPTSPVT_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	888.4304809570312	1	888.430903	887.423627	0.91119	0.00080953	-0.25508	-0.00022662	0.65611	0.00058291	888.430646086468	24.886	0.51954	24.511	24.244	24.764	-0.37521					24	9	4	0	0	0	0.0044301	1	8906	8906		144.35	43.979	1	126080000			2516	3119	1172	1191	2532	2532					-0.024587909901015337
AESPTSPVT	9	Unmodified	_AESPTSPVT_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	444.7180480957031	2	444.71909	887.423627	0.21481	9.5528E-05	-0.75238	-0.0003346	-0.53758	-0.00023907	444.71857682016037	24.872	0.31107	24.497	24.349	24.66	-0.37521					10	5	2	0	0	0	0.0044301	1	8936	8936		144.35	48.066	1	17821000			2517	3119	1172	1191	2533	2533					-0.024587909901015337
AESPTSPVT	9	Unmodified	_AESPTSPVT_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	888.4335327148438	1	888.430903	887.423627	0.88047	0.00078224	-0.063977	-5.6839E-05	0.81649	0.0007254	888.430706255766	24.711	0.62487	24.627	24.393	25.018	-0.083694					31	11	4	0	0	0	0.0044301	1	8754	8754		144.35	43.979	1	87143000			2518	3119	1172	1191	2534	2534					-0.024587909901015337
AESPTSPVT	9	Unmodified	_AESPTSPVT_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	444.7192687988281	2	444.71909	887.423627	0.15526	6.9049E-05	-0.40297	-0.00017921	-0.2477	-0.00011016	444.7189377493643	24.711	0.31243	24.627	24.445	24.757	-0.083694					12	5	3	0	0	0	0.012496	1	8775	8775		107.19	21.915	1	12152000			2519	3119	1172	1191	2535	2535					-0.024587909901015337
AESPTSPVT	9	Unmodified	_AESPTSPVT_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	888.4306030273438	1	888.430903	887.423627	0.93211	0.00082812	-0.24136	-0.00021444	0.69075	0.00061368	888.430566992722	24.844	0.51943	24.575	24.341	24.861	-0.26881					22	9	3	0	0	0	0.0044301	1	8755	8755		144.35	43.979	1	32573000			2520	3119	1172	1191	2536	2536					-0.024587909901015337
AESPVALGP	9	Unmodified	_AESPVALGP_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S3	3	840.4470825195312	1	840.44616	839.438883	0.59727	0.00050198	-0.33908	-0.00028498	0.2582	0.000217	840.4457154669839	38.714	0.3124	38.413	38.196	38.508	-0.30137					9	5	2	0	0	0	0.005725	1	14374	14374		131.3	49.434	1	3129500			2521	5132	1173	1192	2537	2537					0.012741205977590653
AESPVNMMP	9	Unmodified	_AESPVNMMP_					0	0	0		ENST00000592056.5_1_19:45543470-45556151:+|nuORF;CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant;nc|ENSG00000104859|Q8N2M8-3|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	975.4288330078125	1	975.427415	974.420138	0.61443	0.00059933	0.0048794	4.7595E-06	0.61931	0.00060409	975.4272567264394	45.477	0.36074	45.385	45.153	45.514	-0.092472					9	6	2	0	0	0	0.069315	1	17313	17313		65.235	21.377	1	18530000			2522	470	1174	1193	2538	2538					-0.0680950035995238
AESPVNMMP	9	Unmodified	_AESPVNMMP_					0	0	0		ENST00000592056.5_1_19:45543470-45556151:+|nuORF;CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant;nc|ENSG00000104859|Q8N2M8-3|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	487.79083251953125	2	488.217346	974.420138	0.18609	9.0853E-05	0.031503	1.538E-05	0.21759	0.00010623	488.2173519277844	45.456	0.4127	45.364	45.101	45.514	-0.092472					14	7	3	0	0	0	0.073816	1	17341	17341		43.858	3.901	1	13408000			2523	470	1174	1193	2539	2539					-0.0680950035995238
AESPVNMMP	9	Unmodified	_AESPVNMMP_					0	0	0		ENST00000592056.5_1_19:45543470-45556151:+|nuORF;CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant;nc|ENSG00000104859|Q8N2M8-3|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	975.4285278320312	1	975.427415	974.420138	0.69167	0.00067467	-0.41794	-0.00040767	0.27373	0.000267	975.4270423911571	45.73	0.36391	45.419	45.2	45.564	-0.31094					11	6	2	0	0	0	0.031089	1	17132	17132		85.272	29.095	1	4093800			2524	470	1174	1193	2540	2540					-0.0680950035995238
AESPVNMMP	9	Unmodified	_AESPVNMMP_					0	0	0		ENST00000592056.5_1_19:45543470-45556151:+|nuORF;CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant;nc|ENSG00000104859|Q8N2M8-3|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	488.2174072265625	2	488.217346	974.420138	0.2495	0.00012181	-0.045492	-2.221E-05	0.20401	9.9602E-05	488.2171982004258	45.73	0.36391	45.419	45.2	45.564	-0.31094					10	6	2	0	0	0	0.057285	1	17144	17144		71.134	22.788	1	8910000			2525	470	1174	1193	2541	2541					-0.0680950035995238
AESPVNMMP	9	Oxidation (M)	_AESPVNM(Oxidation (M))MP_		AESPVNM(0.985)M(0.015)P		AESPVNM(18)M(-18)P	0	0	1		ENST00000592056.5_1_19:45543470-45556151:+|nuORF;CLASRP|p.P95Lfs*81|3|0.29|ENSG00000104859|chr19:45052871-45052871|C/-|frameshift_variant;nc|ENSG00000104859|Q8N2M8-3|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	495.7453918457031	2	496.214803	990.415053	0.25169	0.00012489	0.24231	0.00012024	0.494	0.00024513	496.2149019479507	34.983	0.62332	34.686	34.336	34.959	-0.29707					17	11	3	0	0	0	0.16306	1	12950	12950		45.7	19.431	2	5129400			2526	470	1174	1194	2542	2542		7			-0.08053804222561212
AESQPPPSPSP	11	Unmodified	_AESQPPPSPSP_					0	0	0			REV__ENST00000566963.1_1_16:77225382-77227709:+|nuORF	REV__ENST00000566963.1_1_16:77225382-77227709:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	365.1767272949219	3	365.176861	1092.50875	-0.095538	-3.4888E-05	-0.2171	-7.928E-05	-0.31264	-0.00011417	365.1767673088791	21.649	0.21091	21.668	21.588	21.799	0.018446					5	3	2	0	0	0	0.35538	1	7593	7593		4.4062	0.81909	1	1893100	+		2527	11175	1175	1195	2543	2543					-0.03380045524272646
AESQPPPSPSP	11	Unmodified	_AESQPPPSPSP_					0	0	0			REV__ENST00000566963.1_1_16:77225382-77227709:+|nuORF	REV__ENST00000566963.1_1_16:77225382-77227709:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		3	365.176861	1092.50875	-0.039738	-1.4511E-05	0.66428	0.00024258	0.62455	0.00022807	365.17714353108494	22.395	0.25941	22.01	21.791	22.051	-0.3852	0.17115	0.00078931	NaN	2.4348	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4924900	+		2528	11175	1175	1195							-0.03380045524272646
AESRDIIV	8	Unmodified	_AESRDIIV_					0	0	0			REV__tr|U7T059|U7T059_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	REV__tr|U7T059|U7T059_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	451.2224426269531	2	451.750724	901.486896	0.24347	0.00010999	0.19124	8.6394E-05	0.43471	0.00019638	451.75089551707714	23.865	0.20906	23.482	23.351	23.56	-0.38324					6	3	2	0	0	0	0.2314	1	8533	8533		46.021	0	1	11253000	+		2529	17890	1176	1196	2544	2544					0.032211945178119095
AESRRAVSA	9	Unmodified	_AESRRAVSA_					0	0	0		PINK1|p.G513Vfs*5|1|0.29|ENSG00000158828|chr1:20650480-20650480|G/-|frameshift_variant;ENSG00000158828|ENST00000321556|PINK1	PINK1|p.G513Vfs*5|1|0.29|ENSG00000158828|chr1:20650480-20650480|G/-|frameshift_variant	PINK1|p.G513Vfs*5|1|0.29|ENSG00000158828|chr1:20650480-20650480|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7569274902344	2	473.756872	945.499192	0.11559	5.476E-05	-0.19112	-9.0544E-05	-0.075531	-3.5783E-05	473.7567434585294	11.551	0.28051	11.269	11.11	11.391	-0.28186					16	11	2	0	0	0	0.55223	1	3736	3736		13.906	0	1	683190			2530	4389	1177	1197	2545	2545					0.024262309808477767
AESRTAQAAA	10	Unmodified	_AESRTAQAAA_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant;QSER1|p.A60Lfs*35|1|0.11|ENSG00000060749|chr11:32931813-32931814|-/TC|frameshift_variant;QSER1|p.S379Lfs*7|1|0.35|ENSG00000060749|chr11:32932776-32932776|T/-|frameshift_variant	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MSMS	HCT116MG_D190212_S2	2	488.2462463378906	2	488.246338	974.478122	0.092777	4.5298E-05	-0.30191	-0.00014741	-0.20913	-0.00010211	488.2462934597748	14.799	0.26061	14.479	14.349	14.609	-0.31952					10	4	3	0	0	0	0.26742	1	4893	4893		53.404	1.9888	1	2614500			2531	1112	1178	1198	2546	2546					-0.010137791186821232
AESSFSQEV	9	Unmodified	_AESSFSQEV_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	983.432373046875	1	983.431632	982.424355	0.91194	0.00089683	0.22517	0.00022144	1.1371	0.0011183	983.4321769903491	34.376	0.25974	34.201	34.02	34.279	-0.17512					7	4	2	0	0	0	0.027492	1	12796	12796		88.904	38.049	1	24913000			2532	1027;18285	1179	1199	2547	2547					-0.06755996341030368
AESSFSQEV	9	Unmodified	_AESSFSQEV_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S3	3	492.2193298339844	2	492.219454	982.424355	0.035558	1.7502E-05	-0.33206	-0.00016344	-0.2965	-0.00014594	492.2192623925333	34.576	0.25942	34.279	34.129	34.388	-0.29707					7	4	2	0	0	0	0.020181	1	12727	12727		96.285	58.311	1	6917900			2533	1027;18285	1179	1199	2548	2548					-0.06755996341030368
AESSFSQEV	9	Unmodified	_AESSFSQEV_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S3	3	983.4305419921875	1	983.431632	982.424355	0.69648	0.00068494	-0.53749	-0.00052858	0.159	0.00015636	983.431006441068	34.556	0.31141	34.259	34.077	34.388	-0.29707					10	5	3	0	0	0	0.016134	1	12732	12732		100.37	45.598	1	9641800			2534	1027;18285	1179	1199	2549	2549					-0.06755996341030368
AESSFSQEV	9	Unmodified	_AESSFSQEV_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	492.219454	982.424355	0.44557	0.00021932	-0.14443	-7.1089E-05	0.30115	0.00014823	492.21932917760677	34.343	0.25974	34.168	34.02	34.279	-0.17511	-0.055574	8.3509E-05	NaN	96.285	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18080000			2535	1027;18285	1179	1199							-0.06755996341030368
AESSLIPRRL	10	Unmodified	_AESSLIPRRL_					0	0	0		ENST00000406172.6_1_22:19708391-19710534:+|nuORF	ENST00000406172.6_1_22:19708391-19710534:+|nuORF	ENST00000406172.6_1_22:19708391-19710534:+|nuORF	MSMS	HCT116MG_D190212_S3	3	571.2667846679688	2	571.33803	1140.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.653	1	54.357	53.857	54.857	-0.29587								0	0	0	0.94107	1	20714	20714		6.7232	0	1				2536	7714	1180	1200	2550	2550					0.09680194662996655
AESSPTNSP	9	Unmodified	_AESSPTNSP_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	HCT116MG_D190212_S2	2	889.3901977539062	1	889.389767	888.38249	0.9113	0.0008105	-0.19415	-0.00017267	0.71715	0.00063783	889.3893500984386	17.04	0.46857	16.691	16.509	16.978	-0.34933					12	8	2	0	0	0	0.0012137	1	5801	5801		191.38	76.731	1	7594100			2537	2340	1181	1201	2551	2551					-0.06616552029561262
AESSPTNSP	9	Unmodified	_AESSPTNSP_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	HCT116MG_D190212_S3	3	889.3905639648438	1	889.389767	888.38249	0.76093	0.00067676	0.035051	3.1174E-05	0.79598	0.00070793	889.3897751829576	16.542	0.36412	16.627	16.445	16.809	0.085424					11	6	3	0	0	0	1.6274E-08	1	5506	5506		231.73	79.314	1	4231800			2538	2340	1181	1201	2552	2552					-0.06616552029561262
AESSRGLSA	9	Unmodified	_AESSRGLSA_					0	0	0		ENST00000480658.5_1_7:45108073-45112383:+|nuORF;ENST00000482714.5_1_7:45067303-45110133:+|nuORF;ENST00000472223.5_1_7:45067303-45110133:+|nuORF;nc|ENSG00000136280|Q9BSQ5-4|CCM2;ENSG00000136280|ENST00000258781|CCM2;nc|ENSG00000136280|Q9BSQ5-2|CCM2;ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000480658.5_1_7:45108073-45112383:+|nuORF	ENST00000480658.5_1_7:45108073-45112383:+|nuORF	MSMS	HCT116MG_D190212_S2	2	439.2228088378906	2	439.222331	876.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.529	1	20.15	19.65	20.65	-0.37949								0	0	0	0.75215	1	7179	7179		16.566	0.71869	1				2539	3411	1182	1202	2553	2553					-0.013048530387095525
AESSSKFKP	9	Unmodified	_AESSSKFKP_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MSMS	HCT116MG_D190212_S2	2	490.7563171386719	2	490.756007	979.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.923	1	20.54	20.04	21.04	-0.38288								0	0	0	0.0060055	1	7336	7336		114.19	36.037	1				2540	1313	1183	1203	2554	2554					0.006891771722393969
AESSSKFKP	9	Unmodified	_AESSSKFKP_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MULTI-MSMS	HCT116MG_D190212_S3	3	490.7561950683594	2	490.756007	979.497461	0.087599	4.299E-05	0.89626	0.00043984	0.98386	0.00048283	490.7560717352195	19.925	0.5731	19.973	19.478	20.051	0.048107					16	10	2	0	0	0	0.16285	1	6849	6849		45.74	12.954	1	3392100			2541	1313	1183	1203	2555	2555					0.006891771722393969
AESTLPGRHTV	11	Unmodified	_AESTLPGRHTV_					0	0	0		nc|ENSG00000181038|Q86XA0-2|METTL23;ENSG00000181038|ENST00000341249|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	MULTI-MSMS	HCT116MG_D190212_S2	2	584.31005859375	2	584.309469	1166.60439	0.45523	0.00026599	0.045075	2.6337E-05	0.5003	0.00029233	584.3094648201716	23.345	0.46728	22.96	22.674	23.141	-0.3852					14	8	2	0	0	0	0.035922	1	8308	8308		142.94	105.87	1	17127000			2542	5622	1184	1204	2556	2556					0.02774727386622544
AESTLPGRHTV	11	Unmodified	_AESTLPGRHTV_					0	0	0		nc|ENSG00000181038|Q86XA0-2|METTL23;ENSG00000181038|ENST00000341249|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	MULTI-MSMS	HCT116MG_D190212_S3	3	389.87518310546875	3	389.875405	1166.60439	-0.12956	-5.0512E-05	-0.19937	-7.7731E-05	-0.32893	-0.00012824	389.8753728784513	22.673	0.40443	22.654	22.439	22.844	-0.018869					12	7	2	0	0	0	0.7378	1	7952	7952		7.846	1.6117	1	3949300			2543	5622	1184	1204	2557	2557					0.02774727386622544
AESTLPGRHTV	11	Unmodified	_AESTLPGRHTV_					0	0	0		nc|ENSG00000181038|Q86XA0-2|METTL23;ENSG00000181038|ENST00000341249|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	MULTI-MSMS	HCT116MG_D190212_S3	3	584.3110961914062	2	584.309469	1166.60439	0.38053	0.00022235	0.51892	0.00030321	0.89945	0.00052556	584.3098645030248	22.692	0.50842	22.673	22.439	22.948	-0.018869					13	9	2	0	0	0	0.26018	1	7978	7978		89.609	58.34	1	5501600			2544	5622	1184	1204	2558	2558					0.02774727386622544
AESTLPGRHTV	11	Unmodified	_AESTLPGRHTV_					0	0	0		nc|ENSG00000181038|Q86XA0-2|METTL23;ENSG00000181038|ENST00000341249|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	MULTI-SECPEP	HCT116MG_D190212_S4	4	584.7826538085938	2	584.309469	1166.60439	0.19555	0.00011426	1.2414	0.00072537	1.437	0.00083963	584.3103814871802	22.969	0.20741	22.731	22.603	22.81	-0.23758					6	3	2	0	0	0	0.34342	1	8028	8028		37.771	18.409	1	1912600			2545	5622	1184	1204	2559	2559					0.02774727386622544
AESTNFATV	9	Unmodified	_AESTNFATV_					0	0	0		ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	ENST00000489243.5_1_9:6758133-6893415:+|nuORF	ENST00000489243.5_1_9:6758133-6893415:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	939.4422607421875	1	939.441802	938.434526	0.6021	0.00056564	0.51732	0.00048599	1.1194	0.0010516	939.4422261304466	37.2	0.26026	36.899	36.717	36.977	-0.30137					7	4	2	0	0	0	0.097615	1	13786	13786		58.679	12.979	1	4732900			2546	2101	1185	1205	2560	2560					-0.037153886157966554
AESTNFATV	9	Unmodified	_AESTNFATV_					0	0	0		ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	ENST00000489243.5_1_9:6758133-6893415:+|nuORF	ENST00000489243.5_1_9:6758133-6893415:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	939.441802	938.434526	0.60311	0.00056659	0.70932	0.00066637	1.3124	0.001233	939.4423308692307	37.001	0.25756	36.886	36.705	36.963	-0.11478	-0.0066195	0.00010948	NaN	58.679	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18404000			2547	2101	1185	1205							-0.037153886157966554
AESTVIAKV	9	Unmodified	_AESTVIAKV_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3;ENST00000560150.1_1_15:102255033-102261345:-|nuORF	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2685241699219	2	459.26875	916.522947	0.32514	0.00014933	-0.69006	-0.00031693	-0.36492	-0.0001676	459.26839071150056	31.926	0.25817	31.692	31.576	31.834	-0.23474					6	4	2	0	0	0	0.22946	1	11829	11829		38.176	11.292	1	11682000			2548	5828	1186	1206	2561	2561					0.06134651694662807
AESVANVA	8	Unmodified	_AESVANVA_					0	0	0		ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8	ENSG00000151491|ENST00000281172|EPS8	ENSG00000151491|ENST00000281172|EPS8	MULTI-MSMS	HCT116MG_D190212_S2	2	760.3841552734375	1	760.383559	759.376283	0.97538	0.00074167	0.36787	0.00027972	1.3433	0.0010214	760.383547119728	26.985	0.26297	26.632	26.45	26.713	-0.35254					6	4	2	0	0	0	0.23195	1	9814	9814		67.344	18.998	1	8592900			2549	4115	1187	1207	2562	2562					-0.0130302547042902
AESVANVA	8	Unmodified	_AESVANVA_					0	0	0		ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8	ENSG00000151491|ENST00000281172|EPS8	ENSG00000151491|ENST00000281172|EPS8	MULTI-MSMS	HCT116MG_D190212_S3	3	760.3846435546875	1	760.383559	759.376283	0.61188	0.00046526	-0.02801	-2.1298E-05	0.58387	0.00044396	760.3831597196079	26.846	0.26042	26.697	26.567	26.827	-0.14924					6	4	2	0	0	0	0.12463	1	9687	9687		89.427	28.069	1	2528700			2550	4115	1187	1207	2563	2563					-0.0130302547042902
AESVEGSPIA	10	Unmodified	_AESVEGSPIA_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MSMS	HCT116MG_D190212_S1	1	479.782470703125	2	480.237647	958.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.026	1	27.026	26.526	27.526	0								0	0	0	0.72975	1	9790	9790		36.127	1.7253	1		+		2551	13635	1188	1208	2564	2564					-0.020151194443201348
AESVNGANPEC	11	Unmodified	_AESVNGANPEC_					0	0	0			REV__nc|ENSG00000163697|Q92870-2|APBB2	REV__nc|ENSG00000163697|Q92870-2|APBB2	MSMS	HCT116MG_D190212_S2	2	363.82940673828125	3	364.153839	1089.43969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.712	1	22.327	21.827	22.827	-0.3852								0	0	0	0.95113	1	8060	8060		2.6312	0	1		+		2552	12944	1189	1209	2565	2565					-0.10145452815504541
AESVPMSKP	9	Unmodified	_AESVPMSKP_					0	0	0			REV__ASXL2|p.S466Ffs*8|1|0.28|ENSG00000143970|chr2:25750159-25750160|-/A|frameshift_variant	REV__ASXL2|p.S466Ffs*8|1|0.28|ENSG00000143970|chr2:25750159-25750160|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2297058105469	2	473.239135	944.463718	0.26388	0.00012488	-0.25265	-0.00011956	0.011233	5.3158E-06	473.2388291973677	26.267	0.78017	25.966	25.713	26.493	-0.30087					23	14	2	0	0	0	0.45867	1	9311	9311		19.257	1.1106	1	4690800	+		2553	9997	1190	1210	2566	2566					-0.010735675911632825
AESVQAFVV	9	Unmodified	_AESVQAFVV_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	950.5030517578125	1	949.498923	948.491647	0.53558	0.00050853	0.054249	5.1509E-05	0.58983	0.00056004	949.4989703934177	50.162	0.30809	49.993	49.886	50.194	-0.16864					8	5	2	0	0	0	0.19461	1	19240	19240		41.84	11.203	1	28897000			2554	1904	1191	1211	2567	2567					0.01534078660574778
AESVQAFVV	9	Unmodified	_AESVQAFVV_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	949.498923	948.491647	0.53558	0.00050853	0.054249	5.1509E-05	0.58983	0.00056004	949.4989703934177	50.162	0.30809	49.993	49.886	50.194	-0.16864	-0.05213	-0.00023526	NaN	41.84	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28897000			2555	1904	1191	1211							0.01534078660574778
AESVQAFVV	9	Unmodified	_AESVQAFVV_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	949.498923	948.491647	0.70515	0.00066954	0.42282	0.00040147	1.128	0.001071	949.4993212843214	50.413	0.26155	50.097	49.914	50.176	-0.31525	0.05213	0.0001147	NaN	41.84	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3644500			2556	1904	1191	1211							0.01534078660574778
AESVSQVTA	9	Unmodified	_AESVSQVTA_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	891.4425659179688	1	891.441802	890.434526	1.2155	0.0010835	0.021485	1.9153E-05	1.237	0.0011027	891.4415418381693	26.101	0.31218	25.74	25.557	25.87	-0.36164					12	5	3	0	0	0	0.010834	1	9430	9430		111.29	18.796	1	32988000			2557	5602	1192	1212	2568	2568					-0.015073886158006644
AESVSQVTA	9	Unmodified	_AESVSQVTA_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	HCT116MG_D190212_S3	3	891.4428100585938	1	891.441802	890.434526	1.0399	0.00092699	-0.25468	-0.00022703	0.7852	0.00069996	891.4416588097083	26.013	0.41734	25.885	25.65	26.068	-0.12795					14	7	3	0	0	0	0.010834	1	9303	9303		111.29	18.796	1	20194000			2558	5602	1192	1212	2569	2569					-0.015073886158006644
AESVSQVTA	9	Unmodified	_AESVSQVTA_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	HCT116MG_D190212_S3	3	446.2244873046875	2	446.224539	890.434526	0.23243	0.00010371	-0.016537	-7.379E-06	0.21589	9.6335E-05	446.224395024507	26.006	0.6258	25.878	25.65	26.276	-0.12795					17	11	3	0	0	0	0.24895	1	9314	9314		36.127	5.4905	1	14230000			2559	5602	1192	1212	2570	2570					-0.015073886158006644
AESVSQVTA	9	Unmodified	_AESVSQVTA_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	HCT116MG_D190212_S4	4	891.4423217773438	1	891.441802	890.434526	0.71446	0.0006369	0.44159	0.00039365	1.1561	0.0010306	891.4421805221815	26.144	0.31231	25.854	25.672	25.984	-0.29022					9	5	2	0	0	0	0.010834	1	9294	9294		111.29	18.796	1	6597500			2560	5602	1192	1212	2571	2571					-0.015073886158006644
AESVVKLTA	9	Unmodified	_AESVVKLTA_					0	0	0		ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	MULTI-MSMS	HCT116MG_D190212_S1	1	459.2687072753906	2	459.26875	916.522947	0.10991	5.048E-05	0.3382	0.00015533	0.44812	0.00020581	459.26884040971504	33.946	0.41772	33.946	33.815	34.233	0					9	7	2	0	0	0	0.011034	1	12597	12597		110.79	60.86	1	11950000			2561	4962	1193	1213	2572	2572					0.06134651694662807
AESVVKLTA	9	Unmodified	_AESVVKLTA_					0	0	0		ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2690124511719	2	459.26875	916.522947	0.16099	7.394E-05	0.029342	1.3476E-05	0.19034	8.7416E-05	459.26870904477846	34.169	0.3111	33.993	33.864	34.175	-0.17512					11	5	3	0	0	0	0.0068642	1	12706	12706		121.35	49.424	1	114310000			2562	4962	1193	1213	2573	2573					0.06134651694662807
AESVVKLTA	9	Unmodified	_AESVVKLTA_					0	0	0		ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	MULTI-MSMS	HCT116MG_D190212_S2	2	917.5307006835938	1	917.530224	916.522947	0.68727	0.00063059	0.088702	8.1387E-05	0.77597	0.00071198	917.5300499265735	34.169	0.20731	33.993	33.864	34.072	-0.17512					6	3	2	0	0	0	0.0068642	1	12713	12713		121.35	44.521	1	33508000			2563	4962	1193	1213	2574	2574					0.06134651694662807
AESVVKLTA	9	Unmodified	_AESVVKLTA_					0	0	0		ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	MULTI-MSMS	HCT116MG_D190212_S3	3	459.26885986328125	2	459.26875	916.522947	0.40156	0.00018442	-0.13867	-6.3687E-05	0.26289	0.00012074	459.2685942918673	34.343	0.41615	34.049	33.819	34.236	-0.2942					16	7	3	0	0	0	0.0060369	1	12619	12619		128.57	66	1	49052000			2564	4962	1193	1213	2575	2575					0.06134651694662807
AESVVKLTA	9	Unmodified	_AESVVKLTA_					0	0	0		ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	MULTI-MSMS	HCT116MG_D190212_S4	4	459.2688903808594	2	459.26875	916.522947	0.06495	2.9829E-05	0.40737	0.00018709	0.47232	0.00021692	459.26858497559016	34.458	0.87301	34.073	33.568	34.441	-0.38558					25	16	3	0	0	0	0.012531	1	12584	12584		107.1	57.167	1	23634000			2565	4962	1193	1213	2576	2576					0.06134651694662807
AESVVKLTA	9	Unmodified	_AESVVKLTA_					0	0	0		ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	917.530224	916.522947	0.75192	0.00068991	-0.43168	-0.00039608	0.32023	0.00029382	917.5293392483347	34.332	0.20804	34.038	33.871	34.079	-0.29419	0.022263	-0.00032849	NaN	121.35	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3810300			2566	4962	1193	1213							0.06134651694662807
AESWGTGRAVA	11	Unmodified	_AESWGTGRAVA_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2770385742188	2	552.775262	1103.53597	0.18657	0.00010313	0.65649	0.00036289	0.84306	0.00046602	553.2772759136254	30.722	0.2076	30.455	30.353	30.56	-0.26704					6	3	2	0	0	0	0.13358	1	11320	11320		83.278	43.328	1	24550000			2567	5331	1194	1214	2577	2577					-0.01165517193226151
AESWGTGRAVA	11	Unmodified	_AESWGTGRAVA_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7754516601562	2	552.775262	1103.53597	0.32585	0.00018012	-0.055746	-3.0815E-05	0.2701	0.00014931	552.7751382907999	30.839	0.41398	30.578	30.399	30.813	-0.26071					14	7	3	0	0	0	0.18623	1	11270	11270		77.049	35.209	1	16869000			2568	5331	1194	1214	2578	2578					-0.01165517193226151
AESWGTGRAVA	11	Unmodified	_AESWGTGRAVA_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	HCT116MG_D190212_S4	4	552.77587890625	2	552.775262	1103.53597	0.42476	0.00023479	0.62499	0.00034548	1.0497	0.00058027	552.7755415932647	30.975	0.25943	30.611	30.461	30.72	-0.36416					6	4	2	0	0	0	0.33394	2	11236	11225;11236		60.899	29.631	1	7057400			2569	5331	1194	1214	2579;2580	2580					-0.01165517193226151
AESWTHWAT	9	Unmodified	_AESWTHWAT_					0	0	0		ENST00000399767.5_1_22:18226574-18257190:-|nuORF	ENST00000399767.5_1_22:18226574-18257190:-|nuORF	ENST00000399767.5_1_22:18226574-18257190:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.7904663085938	2	544.743431	1087.47231	0.67306	0.00036664	0.24079	0.00013117	0.91385	0.00049781	544.7434487745581	43.814	0.15464	43.736	43.659	43.813	-0.078373					4	2	2	0	0	0	0.2458	1	16607	16607		18.146	9.4009	1	5737900			2570	7692	1195	1215	2581	2581					-0.06792877630323346
AESYHQHFA	9	Unmodified	_AESYHQHFA_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MSMS	HCT116MG_D190212_S1	1	545.2412109375	2	545.241055	1088.46756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.066	1	22.066	21.566	22.566	0								0	0	0	0.44802	1	7794	7794		31.268	13.122	1				2571	5809	1196	1216	2582	2582					-0.07313761773093574
AESYHQHFA	9	Unmodified	_AESYHQHFA_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	HCT116MG_D190212_S2	2	545.240966796875	2	545.241055	1088.46756	0.56452	0.0003078	-0.12578	-6.8583E-05	0.43874	0.00023922	545.2408725524442	22.617	0.31136	22.232	22.051	22.362	-0.3852					9	5	2	0	0	0	0.0058997	1	8032	8032		129.77	89.823	1	35586000			2572	5809	1196	1216	2583	2583					-0.07313761773093574
AESYHQHFA	9	Unmodified	_AESYHQHFA_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	HCT116MG_D190212_S3	3	545.742919921875	2	545.241055	1088.46756	0.44686	0.00024365	0.032068	1.7485E-05	0.47893	0.00026113	545.24102480478	21.859	0.26114	21.86	21.677	21.938	0.00074577					6	4	2	0	0	0	0.0201	1	7644	7644		96.367	70.098	1	6177100			2573	5809	1196	1216	2584	2584					-0.07313761773093574
AESYHQHFA	9	Unmodified	_AESYHQHFA_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	545.241055	1088.46756	0.51524	0.00028093	-0.25644	-0.00013982	0.2588	0.00014111	545.2409150547413	21.985	0.20881	21.985	21.854	22.063	0	-0.040696	-0.00019077	NaN	129.77	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5146500			2574	5809	1196	1216							-0.07313761773093574
AESYHQHFAA	10	Unmodified	_AESYHQHFAA_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	HCT116MG_D190212_S1	1	580.7600708007812	2	580.759612	1159.50467	0.49087	0.00028508	-0.048281	-2.804E-05	0.44259	0.00025704	580.7595964072501	23.653	0.20901	23.653	23.523	23.732	0					7	3	3	0	0	0	0.18147	2	8458	8406;8458		61.09	39.553	1	9715000			2575	5809	1197	1217	2585;2586	2586					-0.06870090227334913
AESYHQHFAA	10	Unmodified	_AESYHQHFAA_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	HCT116MG_D190212_S2	2	580.7598876953125	2	580.759612	1159.50467	0.66103	0.0003839	-0.085928	-4.9904E-05	0.5751	0.000334	580.7594316177826	24.28	0.31211	23.9	23.718	24.03	-0.38003					11	5	3	0	0	0	0.017942	1	8695	8695		125.04	79.338	1	41515000			2576	5809	1197	1217	2587	2587					-0.06870090227334913
AESYHQHFAA	10	Unmodified	_AESYHQHFAA_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	HCT116MG_D190212_S2	2	387.5089416503906	3	387.508834	1159.50467	0.22196	8.6011E-05	-0.22592	-8.7545E-05	-0.0039591	-1.5342E-06	387.508742511058	24.28	0.26024	23.9	23.718	23.979	-0.38003					9	4	3	0	0	0	0.68623	1	8708	8708		14.218	4.9744	1	11603000			2577	5809	1197	1217	2588	2588					-0.06870090227334913
AESYHQHFAA	10	Unmodified	_AESYHQHFAA_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MSMS	HCT116MG_D190212_S3	3	580.7594604492188	2	580.759612	1159.50467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.708	1	23.652	23.152	24.152	-0.055683								0	0	0	0.091362	1	8384	8384		84.522	58.254	1				2578	5809	1197	1217	2589	2589					-0.06870090227334913
AESYYRHAA	9	Unmodified	_AESYYRHAA_					0	0	0		SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	534.2493896484375	2	534.24888	1066.48321	0.31317	0.00016731	0.1968	0.00010514	0.50997	0.00027245	534.750369146578	18.506	0.20826	18.506	18.402	18.61	0					5	3	2	0	0	0	0.28785	1	6379	6379		32.037	15.888	1	2221300			2579	2530	1198	1218	2590	2590					-0.04737475256069956
AESYYRHAA	9	Unmodified	_AESYYRHAA_					0	0	0		SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2490234375	2	534.24888	1066.48321	0.39309	0.00021001	0.21543	0.00011509	0.60852	0.0003251	534.2489222884351	19.129	0.26052	18.759	18.627	18.888	-0.3695					12	4	4	0	0	0	0.016744	2	6639	6630;6639		99.755	59.806	1	28023000			2580	2530	1198	1218	2591;2592	2592					-0.04737475256069956
AESYYRHAA	9	Unmodified	_AESYYRHAA_					0	0	0		SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	534.751220703125	2	534.24888	1066.48321	0.30698	0.000164	1.0025	0.00053557	1.3094	0.00069957	534.7512470784144	18.05	0.98868	18.127	17.425	18.413	0.076334					40	18	3	0	0	0	0.026999	1	6129	6129		89.401	20.296	1	11800000			2581	2530	1198	1218	2593	2593					-0.04737475256069956
AESYYRHAA	9	Unmodified	_AESYYRHAA_					0	0	0		SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	356.5014953613281	3	356.501679	1066.48321	-0.2171	-7.7395E-05	0.17845	6.3617E-05	-0.03865	-1.3779E-05	356.501665069388	18.05	0.20779	18.127	17.997	18.205	0.076334					5	3	2	0	0	0	0.45867	1	6131	6131		23.79	12.99	1	3000800			2582	2530	1198	1218	2594	2594					-0.04737475256069956
AESYYRHAA	9	Unmodified	_AESYYRHAA_					0	0	0		SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	534.2489013671875	2	534.24888	1066.48321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.473	1	18.292	17.792	18.792	-0.18052								0	0	0	0.080552	1	6202	6202		61.602	25.096	1				2583	2530	1198	1218	2595	2595					-0.04737475256069956
AETAAVTVA	9	Unmodified	_AETAAVTVA_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	832.441162109375	1	832.441074	831.433798	1.0683	0.00088929	0.48577	0.00040438	1.5541	0.0012937	832.4415948805105	28.358	0.26542	28.358	28.216	28.482	0					7	4	2	0	0	0	0.031005	1	10342	10342		85.357	7.2073	1	7134900			2584	9115	1199	1219	2596	2596					0.011338167351482298
AETAAVTVA	9	Unmodified	_AETAAVTVA_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	832.4414672851562	1	832.441074	831.433798	0.75242	0.00062634	0.2319	0.00019305	0.98432	0.00081939	832.4410877533337	28.744	0.35653	28.428	28.249	28.606	-0.31613					11	6	3	0	0	0	0.031005	1	10500	10500		85.357	7.2073	1	67894000			2585	9115	1199	1219	2597	2597					0.011338167351482298
AETAAVTVA	9	Unmodified	_AETAAVTVA_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	832.4415283203125	1	832.441074	831.433798	1.0092	0.0008401	0.027563	2.2944E-05	1.0368	0.00086305	832.4410138905853	28.773	0.52069	28.551	28.317	28.838	-0.22195					23	9	4	0	0	0	0.031005	1	10410	10410		85.357	0	1	55404000			2586	9115	1199	1219	2598	2598					0.011338167351482298
AETAAVTVA	9	Unmodified	_AETAAVTVA_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	832.441650390625	1	832.441074	831.433798	0.74339	0.00061883	0.33188	0.00027627	1.0753	0.00089511	832.4411774189535	28.893	0.46742	28.552	28.366	28.834	-0.34059					15	8	3	0	0	0	0.031005	1	10409	10409		85.357	17.276	1	18569000			2587	9115	1199	1219	2599	2599					0.011338167351482298
AETAAVTVAAA	11	Unmodified	_AETAAVTVAAA_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	974.5158081054688	1	974.515302	973.508025	0.59855	0.0005833	0.11206	0.0001092	0.71061	0.0006925	974.5152640581919	30.917	0.25974	30.65	30.508	30.768	-0.26704					6	4	2	0	0	0	0.041776	1	11414	11414		99.799	17.909	1	11872000			2588	9115	1200	1220	2600	2600					0.02021159826665553
AETAETRSP	9	Unmodified	_AETAETRSP_					0	0	0		ENST00000497470.1_1_1:155231875-155232025:-|nuORF;ENST00000480219.1_1_1:155231512-155232061:-|nuORF	ENST00000497470.1_1_1:155231875-155232025:-|nuORF	ENST00000497470.1_1_1:155231875-155232025:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	481.22698974609375	2	481.232896	960.451239	0.1344	6.4677E-05	0.21046	0.00010128	0.34486	0.00016596	481.2330612655968	16.363	0.31354	16.022	15.786	16.1	-0.34183					9	5	2	0	0	0	0.068828	2	5446	5446;5497		65.474	27.298	1	3957100			2589	8237	1201	1221	2601;2602	2601					-0.030568877298605912
AETAETRSP	9	Unmodified	_AETAETRSP_					0	0	0		ENST00000497470.1_1_1:155231875-155232025:-|nuORF;ENST00000480219.1_1_1:155231512-155232061:-|nuORF	ENST00000497470.1_1_1:155231875-155232025:-|nuORF	ENST00000497470.1_1_1:155231875-155232025:-|nuORF	MSMS	HCT116MG_D190212_S3	3	481.2250671386719	2	481.232896	960.451239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.31	1	15.393	14.893	15.893	0.083271								0	0	0	0.403	1	4999	4999		33.445	3.2201	1				2590	8237	1201	1221	2603	2603					-0.030568877298605912
AETAETRSP	9	Unmodified	_AETAETRSP_					0	0	0		ENST00000497470.1_1_1:155231875-155232025:-|nuORF;ENST00000480219.1_1_1:155231512-155232061:-|nuORF	ENST00000497470.1_1_1:155231875-155232025:-|nuORF	ENST00000497470.1_1_1:155231875-155232025:-|nuORF	MSMS	HCT116MG_D190212_S3	3	481.23284912109375	2	481.232896	960.451239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.48	1	15.566	15.066	16.066	0.085423								0	0	0	0.24671	1	5068	5068		43.982	14.9	1				2591	8237	1201	1221	2604	2604					-0.030568877298605912
AETAVQLFI	9	Unmodified	_AETAVQLFI_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	HCT116MG_D190212_S1	1	991.5458984375	1	991.545874	990.538597	0.55096	0.0005463	0.30999	0.00030737	0.86095	0.00085367	991.5455466486263	57.438	0.15599	57.438	57.36	57.516	0					4	2	2	0	0	0	0.057285	1	22127	22127		71.134	27.275	1	7843300			2592	2710	1202	1222	2605	2605					0.04294938211717181
AETAVQLFI	9	Unmodified	_AETAVQLFI_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	HCT116MG_D190212_S2	2	991.5465087890625	1	991.545874	990.538597	0.83458	0.00082752	-0.33369	-0.00033087	0.50089	0.00049665	991.5454746781744	57.67	0.20655	57.495	57.367	57.574	-0.17494					5	3	2	0	0	0	0.031089	2	22296	22283;22296		85.272	23.915	1	60551000			2593	2710	1202	1222	2606;2607	2607					0.04294938211717181
AETAVQLFI	9	Unmodified	_AETAVQLFI_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MATCH	HCT116MG_D190212_S4	4		1	991.545874	990.538597	0.80626	0.00079945	-0.34138	-0.00033849	0.46489	0.00046096	991.5455677098239	57.782	0.15627	57.487	57.357	57.514	-0.29465	0.014022	-0.00014229	NaN	85.272	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1089600			2594	2710	1202	1222							0.04294938211717181
AETAVSVIP	9	Unmodified	_AETAVSVIP_					0	0	0		nc|ENSG00000126787|Q15398-1|DLGAP5;DLGAP5|p.E743Rfs*25|1|0.45|ENSG00000126787|chr14:55151836-55151837|-/T|frameshift_variant;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MSMS	HCT116MG_D190212_S1	1	886.4884643554688	1	886.488024	885.480748	0.64355	0.0005705	-0.49358	-0.00043755	0.14997	0.00013295	886.4873337287742	44.803	0.25949	44.803	44.621	44.88	0					7	4	2	0	0	0	0.019399	1	16965	16965		97.075	29.731	1	28359000			2595	687	1203	1223	2608	2608					0.033426762862859505
AETAVSVIP	9	Unmodified	_AETAVSVIP_					0	0	0		nc|ENSG00000126787|Q15398-1|DLGAP5;DLGAP5|p.E743Rfs*25|1|0.45|ENSG00000126787|chr14:55151836-55151837|-/T|frameshift_variant;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MSMS	HCT116MG_D190212_S2	2	886.4889526367188	1	886.488024	885.480748	1.0049	0.00089084	-0.10016	-8.8788E-05	0.90475	0.00080205	886.4878498862623	44.857	0.52141	44.772	44.535	45.056	-0.084797					22	9	3	0	0	0	0.019399	1	17044	17044		97.075	19.09	1	221630000			2596	687	1203	1223	2609	2609					0.033426762862859505
AETAVSVIP	9	Unmodified	_AETAVSVIP_					0	0	0		nc|ENSG00000126787|Q15398-1|DLGAP5;DLGAP5|p.E743Rfs*25|1|0.45|ENSG00000126787|chr14:55151836-55151837|-/T|frameshift_variant;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MSMS	HCT116MG_D190212_S2	2	443.7475891113281	2	443.74765	885.480748	0.3608	0.00016011	0.16449	7.2991E-05	0.52529	0.0002331	443.7475059827673	44.905	0.25903	44.82	44.639	44.899	-0.084797					7	4	2	0	0	0	0.043314	1	17074	17074		77.984	41.94	1	27553000			2597	687	1203	1223	2610	2610					0.033426762862859505
AETAVSVIP	9	Unmodified	_AETAVSVIP_					0	0	0		nc|ENSG00000126787|Q15398-1|DLGAP5;DLGAP5|p.E743Rfs*25|1|0.45|ENSG00000126787|chr14:55151836-55151837|-/T|frameshift_variant;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MSMS	HCT116MG_D190212_S3	3	886.489013671875	1	886.488024	885.480748	0.89574	0.00079406	-0.087024	-7.7146E-05	0.80871	0.00071692	886.4878531395015	45.12	0.62576	44.811	44.576	45.202	-0.30927					29	11	4	0	0	0	0.019399	1	16858	16858		97.075	26.359	1	76132000			2598	687	1203	1223	2611	2611					0.033426762862859505
AETAVSVIP	9	Unmodified	_AETAVSVIP_					0	0	0		nc|ENSG00000126787|Q15398-1|DLGAP5;DLGAP5|p.E743Rfs*25|1|0.45|ENSG00000126787|chr14:55151836-55151837|-/T|frameshift_variant;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MSMS	HCT116MG_D190212_S3	3	443.74774169921875	2	443.74765	885.480748	0.22899	0.00010162	-0.038182	-1.6943E-05	0.19081	8.4672E-05	443.7475504503877	45.12	0.3127	44.811	44.628	44.941	-0.30927					10	5	3	0	0	0	0.043314	1	16889	16889		77.984	27.129	1	11042000			2599	687	1203	1223	2612	2612					0.033426762862859505
AETAVSVIP	9	Unmodified	_AETAVSVIP_					0	0	0		nc|ENSG00000126787|Q15398-1|DLGAP5;DLGAP5|p.E743Rfs*25|1|0.45|ENSG00000126787|chr14:55151836-55151837|-/T|frameshift_variant;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MSMS	HCT116MG_D190212_S4	4	886.4893188476562	1	886.488024	885.480748	0.8117	0.00071956	0.13526	0.00011991	0.94696	0.00083947	886.4879654706225	45.231	0.49744	44.858	44.646	45.143	-0.37266					21	9	3	0	0	0	0.019399	1	16640	16640		97.075	26.359	1	38988000			2600	687	1203	1223	2613	2613					0.033426762862859505
AETAVSVIP	9	Unmodified	_AETAVSVIP_					0	0	0		nc|ENSG00000126787|Q15398-1|DLGAP5;DLGAP5|p.E743Rfs*25|1|0.45|ENSG00000126787|chr14:55151836-55151837|-/T|frameshift_variant;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	MSMS	HCT116MG_D190212_S4	4	443.7476806640625	2	443.74765	885.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.238	1	44.865	44.365	45.365	-0.37266								0	0	0	0.060494	1	16680	16680		67.344	29.193	1				2601	687	1203	1223	2614	2614					0.033426762862859505
AETDTPNRA	9	Unmodified	_AETDTPNRA_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S2	2	487.7303466796875	2	487.73052	973.446488	0.11153	5.4397E-05	0.081368	3.9686E-05	0.1929	9.4083E-05	487.7303332015533	15.841	0.41772	15.507	15.271	15.689	-0.33451					11	7	2	0	0	0	0.0080847	1	5296	5296		118.07	66.439	1	4433100			2602	2370	1204	1224	2615	2615					-0.04129771872624133
AETEARFGA	9	Unmodified	_AETEARFGA_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S1	1	476.2300720214844	2	476.230156	950.445759	0.28854	0.00013741	0.033299	1.5858E-05	0.32184	0.00015327	476.23008472534366	26.267	0.57341	26.267	25.98	26.553	0					22	10	4	0	0	0	0.012596	1	9465	9465		106.94	60.919	1	149830000		+	2603	559	1205	1225	2616	2616					-0.031445665216665475
AETEARFGA	9	Unmodified	_AETEARFGA_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S1	1	951.4523315429688	1	951.453036	950.445759	0.91889	0.00087428	-0.1853	-0.00017631	0.73359	0.00069797	951.4525544384994	26.267	0.26078	26.267	26.136	26.397	0					8	4	2	0	0	0	0.0035183	1	9496	9496		157.8	107.86	1	11903000		+	2604	559	1205	1225	2617	2617					-0.031445665216665475
AETEARFGA	9	Unmodified	_AETEARFGA_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S2	2	476.23016357421875	2	476.230156	950.445759	0.16323	7.7736E-05	0.15748	7.4997E-05	0.32071	0.00015273	476.23018169631416	26.619	0.62788	26.258	26.076	26.704	-0.36164					29	11	4	0	0	0	0.0080847	2	9639	9639;9657		118.07	68.135	1	566800000		+	2605	559	1205	1225	2618;2619	2618					-0.031445665216665475
AETEARFGA	9	Unmodified	_AETEARFGA_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S2	2	951.4537353515625	1	951.453036	950.445759	0.57653	0.00054854	0.23	0.00021883	0.80653	0.00076738	951.4532753697277	26.667	0.36605	26.305	26.128	26.494	-0.36164					15	6	3	0	0	0	0.0035381	1	9646	9646		171.09	118.82	1	79666000		+	2606	559	1205	1225	2620	2620					-0.031445665216665475
AETEARFGA	9	Unmodified	_AETEARFGA_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S3	3	476.2299499511719	2	476.230156	950.445759	0.32844	0.00015641	-0.034221	-1.6297E-05	0.29422	0.00014011	476.2300446312072	26.426	0.57263	26.277	26.046	26.619	-0.14924					27	10	4	0	0	0	0.012596	1	9464	9464		106.94	57.007	1	76338000		+	2607	559	1205	1225	2621	2621					-0.031445665216665475
AETEARFGA	9	Unmodified	_AETEARFGA_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S4	4	476.2300109863281	2	476.230156	950.445759	0.45072	0.00021465	-0.40721	-0.00019393	0.043514	2.0723E-05	476.22986942509976	26.661	0.31169	26.36	26.234	26.545	-0.30087					13	5	3	0	0	0	0.064006	1	9512	9512		67.838	31.711	1	9709800		+	2608	559	1205	1225	2622	2622					-0.031445665216665475
AETEFFSKA	9	Unmodified	_AETEFFSKA_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2478637695312	2	515.248015	1028.48148	-0.0020928	-1.0783E-06	0.21284	0.00010966	0.21075	0.00010859	515.2479310183095	37.942	0.31162	37.942	37.759	38.071	0					11	5	3	0	0	0	0.016412	1	14193	14193		100.09	48.461	1	26035000			2609	2804	1206	1226	2623	2623					-0.03162529064638875
AETEFFSKA	9	Unmodified	_AETEFFSKA_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	HCT116MG_D190212_S2	2	515.248046875	2	515.248015	1028.48148	-0.01405	-7.2394E-06	0.53087	0.00027353	0.51682	0.00026629	515.248155482188	38.027	0.36167	37.934	37.753	38.115	-0.09301					19	6	4	0	0	0	0.016412	1	14260	14260		100.09	48.461	1	196040000			2610	2804	1206	1226	2624	2624					-0.03162529064638875
AETEFFSKA	9	Unmodified	_AETEFFSKA_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2484130859375	2	515.248015	1028.48148	0.24717	0.00012735	0.59756	0.00030789	0.84473	0.00043524	515.2482200678907	38.212	0.45359	37.911	37.691	38.144	-0.30137					21	8	4	0	0	0	0.012531	1	14137	14137		107.1	49.378	1	66527000			2611	2804	1206	1226	2625	2625					-0.03162529064638875
AETEFFSKA	9	Unmodified	_AETEFFSKA_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7499389648438	2	515.248015	1028.48148	0.054361	2.8009E-05	0.87863	0.00045271	0.93299	0.00048072	515.2484449679948	38.36	0.3292	37.977	37.812	38.141	-0.38283					17	6	4	0	0	0	0.026272	1	14041	14041		90.135	38.505	1	18557000			2612	2804	1206	1226	2626	2626					-0.03162529064638875
AETEIIERV	9	Unmodified	_AETEIIERV_					0	0	0		tr|U7T8L6|U7T8L6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00095PE=4SV=1	tr|U7T8L6|U7T8L6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00095PE=4SV=1	tr|U7T8L6|U7T8L6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00095PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2879638671875	2	530.287671	1058.56079	0.047584	2.5233E-05	0.57423	0.00030451	0.62181	0.00032974	530.2879575338478	18.744	0.31169	18.381	18.217	18.529	-0.36325					10	5	3	0	0	0	0.2682	1	6473	6473		34.102	5.6079	1	11663000			2613	18654	1207	1227	2627	2627					0.03385117889456524
AETELQRAA	9	Unmodified	_AETELQRAA_					0	0	0		nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	MSMS	HCT116MG_D190212_S1	1	494.75714111328125	2	494.756538	987.498523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.885	1	23.885	23.385	24.385	0								0	0	0	0.74083	1	8526	8526		17.113	2.2746	1				2614	5979	1208	1228	2628	2628					0.00427391541131783
AETELQRAA	9	Unmodified	_AETELQRAA_					0	0	0		nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	MSMS	HCT116MG_D190212_S2	2	494.7565002441406	2	494.756538	987.498523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.337	1	23.957	23.457	24.457	-0.38003								0	0	0	0.0046152	1	8716	8716		118.07	48.963	1				2615	5979	1208	1228	2629	2629					0.00427391541131783
AETELQRAA	9	Unmodified	_AETELQRAA_					0	0	0		nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	MULTI-MSMS	HCT116MG_D190212_S3	3	494.7564697265625	2	494.756538	987.498523	0.19951	9.871E-05	-0.15471	-7.6546E-05	0.044799	2.2165E-05	494.75646668803677	23.826	0.36495	23.765	23.634	23.999	-0.061449					9	6	2	0	0	0	0.0034607	1	8433	8433		163.04	84.308	1	12368000			2616	5979	1208	1228	2630	2630					0.00427391541131783
AETELQRAA	9	Unmodified	_AETELQRAA_					0	0	0		nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	MSMS	HCT116MG_D190212_S4	4	494.75634765625	2	494.756538	987.498523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.148	1	23.89	23.39	24.39	-0.25816								0	0	0	0.080552	1	8493	8493		61.602	10.747	1				2617	5979	1208	1228	2631	2631					0.00427391541131783
AETELQRAA	9	Unmodified	_AETELQRAA_					0	0	0		nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	494.756538	987.498523	0.34803	0.00017219	-0.1695	-8.3862E-05	0.17853	8.8329E-05	494.75670779982636	23.81	0.2616	23.81	23.575	23.837	0	0.022865	-1.3627E-05	NaN	163.04	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3893100			2618	5979	1208	1228							0.00427391541131783
AETEPWAAA	9	Unmodified	_AETEPWAAA_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	HCT116MG_D190212_S3	3	945.4313354492188	1	945.431238	944.423961	0.80342	0.00075958	-0.44401	-0.00041978	0.35941	0.0003398	945.4310174244033	40.699	0.31276	40.397	40.215	40.528	-0.30161					9	5	2	0	0	0	0.019399	1	15135	15135		97.075	64.958	1	5087800			2619	6335	1209	1229	2632	2632					-0.05047371270245549
AETEPWAAA	9	Unmodified	_AETEPWAAA_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MATCH	HCT116MG_D190212_S2	2		1	945.431238	944.423961	0.8359	0.00079028	0.21971	0.00020772	1.0556	0.000998	945.4319615356304	40.511	0.15499	40.442	40.313	40.468	-0.069626	0.022206	0.00041637	NaN	97.075	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11669000			2620	6335	1209	1229							-0.05047371270245549
AETESHIY	8	Unmodified	_AETESHIY_					0	0	0		ENST00000490926.1_1_3:50388858-50395589:+|nuORF;ENSG00000114395|ENST00000425346|CYB561D2	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	474.7428894042969	2	475.216714	948.418876	0.30583	0.00014534	-0.37179	-0.00017668	-0.065959	-3.1345E-05	475.2166943083826	25.267	0.31283	25.161	24.943	25.256	-0.10618					7	5	2	0	0	0	0.26661	1	8985	8985		24.674	12.142	1	2329200			2621	2419	1210	1230	2633	2633					-0.05739675132861066
AETESHIYRA	10	Unmodified	_AETESHIYRA_					0	0	0		ENST00000490926.1_1_3:50388858-50395589:+|nuORF;ENSG00000114395|ENST00000425346|CYB561D2	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	392.85955810546875	3	392.859643	1175.5571	0.025469	1.0006E-05	-0.14326	-5.628E-05	-0.11779	-4.6274E-05	392.8595573527906	20.878	0.20857	20.878	20.748	20.956	0					6	3	2	0	0	0	0.51975	1	7348	7348		33.821	33.821	1	4859900			2622	2419	1211	1231	2634	2634					-0.023655518843725076
AETESHIYRA	10	Unmodified	_AETESHIYRA_					0	0	0		ENST00000490926.1_1_3:50388858-50395589:+|nuORF;ENSG00000114395|ENST00000425346|CYB561D2	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	588.7861328125	2	588.785827	1175.5571	0.73474	0.0004326	-0.42067	-0.00024768	0.31407	0.00018492	588.7853845601003	20.878	0.20857	20.878	20.748	20.956	0					7	3	3	0	0	0	0.098828	1	7349	7349		93.938	50.166	1	5785200			2623	2419	1211	1231	2635	2635					-0.023655518843725076
AETESHIYRA	10	Unmodified	_AETESHIYRA_					0	0	0		ENST00000490926.1_1_3:50388858-50395589:+|nuORF;ENSG00000114395|ENST00000425346|CYB561D2	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	588.7861938476562	2	588.785827	1175.5571	0.48623	0.00028629	-1.6018	-0.00094312	-1.1156	-0.00065683	588.7857195869435	21.474	0.46755	21.091	20.961	21.429	-0.38288					11	8	2	0	0	0	0.027746	1	7583	7583		132.38	80.75	1	31633000			2624	2419	1211	1231	2636	2636					-0.023655518843725076
AETESHIYRA	10	Unmodified	_AETESHIYRA_					0	0	0		ENST00000490926.1_1_3:50388858-50395589:+|nuORF;ENSG00000114395|ENST00000425346|CYB561D2	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	ENST00000490926.1_1_3:50388858-50395589:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	392.8597412109375	3	392.859643	1175.5571	-0.0047086	-1.8498E-06	0.58132	0.00022838	0.57661	0.00022653	392.85966413985904	21.474	0.25979	21.091	20.961	21.221	-0.38288					7	4	2	0	0	0	0.3449	1	7590	7590		46.475	37.231	1	13142000			2625	2419	1211	1231	2637	2637					-0.023655518843725076
AETHLSLEF	9	Unmodified	_AETHLSLEF_					0	0	0			REV__AGRN|p.R1898H|1|0.3|ENSG00000188157|chr1:1053794-1053794|G/A|missense_variant	REV__AGRN|p.R1898H|1|0.3|ENSG00000188157|chr1:1053794-1053794|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	524.258544921875	2	523.761289	1045.50803	0.42327	0.00022169	-0.52963	-0.0002774	-0.10636	-5.5708E-05	523.7612086046029	40.924	0.51608	40.855	40.673	41.19	-0.069626					23	9	4	0	0	0	0.45867	1	15578	15578		19.257	1.122	1	248660000	+		2626	9890	1212	1232	2638	2638					-0.012908401733284336
AETHVDSRY	9	Unmodified	_AETHVDSRY_					0	0	0			REV__DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	REV__DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	539.2518920898438	2	539.25162	1076.48869	0.49698	0.000268	-0.061709	-3.3277E-05	0.43528	0.00023472	539.2515524788985	24.75	0.20821	24.37	24.239	24.448	-0.38003					8	3	3	0	0	0	0.35128	1	8912	8912		25.399	2.663	1	14888000	+		2627	10367	1213	1233	2639	2639					-0.04649796464218525
AETHVDSRY	9	Unmodified	_AETHVDSRY_					0	0	0			REV__DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	REV__DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	539.25244140625	2	539.25162	1076.48869	0.34658	0.0001869	0.78445	0.00042302	1.131	0.00060991	539.2521773273459	24.254	0.20796	24.193	24.051	24.259	-0.061449					5	3	2	0	0	0	0.45867	1	8625	8625		19.257	1.1106	1	2834400	+		2628	10367	1213	1233	2640	2640					-0.04649796464218525
AETHVDSRY	9	Unmodified	_AETHVDSRY_					0	0	0			REV__DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	REV__DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	539.25162	1076.48869	0.49698	0.000268	-0.061709	-3.3277E-05	0.43528	0.00023472	539.2515524788985	24.75	0.20821	24.37	24.239	24.448	-0.38003	0.088489	-0.00018071	NaN	25.399	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14888000	+		2629	10367	1213	1233							-0.04649796464218525
AETHVDSRY	9	Unmodified	_AETHVDSRY_					0	0	0			REV__DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	REV__DIP2C|p.H1200Lfs*7|1|0.08|ENSG00000151240|chr10:329587-329588|-/GCCCA|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	539.25162	1076.48869	0.34658	0.0001869	0.78445	0.00042302	1.131	0.00060991	539.2521773273459	24.254	0.20796	24.193	24.051	24.259	-0.061449	-0.088489	0.00073187	NaN	25.399	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2834400	+		2630	10367	1213	1233							-0.04649796464218525
AETIKLIDP	9	Unmodified	_AETIKLIDP_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	MSMS	HCT116MG_D190212_S1	1	500.7115173339844	2	500.289682	998.564812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.511	1	18.511	18.011	19.011	0								0	0	0	0.76718	1	6367	6367		10.824	1.4765	1		+		2631	12142	1214	1234	2641	2641					0.06547207383187015
AETISSIDAP	10	Unmodified	_AETISSIDAP_					0	0	0			REV__NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant	REV__NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	502.25177001953125	2	502.250754	1002.48696	0.40481	0.00020332	0.81946	0.00041158	1.2243	0.00061489	502.25136376598067	23.357	0.20843	23.317	23.187	23.396	-0.03968					5	3	2	0	0	0	0.64004	1	8250	8250		25.399	1.3787	1	4802900	+		2632	10890	1215	1235	2642	2642					-0.01418850272864347
AETKDIPAA	9	Unmodified	_AETKDIPAA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	HCT116MG_D190212_S2	2	915.4781494140625	1	915.478188	914.470912	0.6427	0.00058838	0.28943	0.00026496	0.93213	0.00085334	915.4785101913527	23.596	0.31144	23.213	23.039	23.351	-0.38324					8	5	2	0	0	0	0.030039	1	8440	8440		86.332	4.4416	1	10038000			2633	2088	1216	1236	2643	2643					0.010254882808908405
AETKDIPAA	9	Unmodified	_AETKDIPAA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	HCT116MG_D190212_S3	3	458.24298095703125	2	458.242732	914.470912	0.30935	0.00014176	0.057501	2.635E-05	0.36685	0.00016811	458.24262930589975	23.099	0.56685	23.059	22.776	23.343	-0.03968					22	10	3	0	0	0	0.026272	1	8104	8104		90.135	4.8629	1	37110000			2634	2088	1216	1236	2644	2644					0.010254882808908405
AETKDIPAA	9	Unmodified	_AETKDIPAA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	HCT116MG_D190212_S3	3	915.4795532226562	1	915.478188	914.470912	0.67831	0.00062098	-0.14181	-0.00012982	0.5365	0.00049116	915.4778570886014	23.096	0.3123	23.057	22.875	23.187	-0.03968					9	5	2	0	0	0	0.045679	1	8167	8167		76.825	18.146	1	2809500			2635	2088	1216	1236	2645	2645					0.010254882808908405
AETKDIPAA	9	Unmodified	_AETKDIPAA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	HCT116MG_D190212_S4	4	458.2430114746094	2	458.242732	914.470912	0.0060819	2.787E-06	0.38913	0.00017832	0.39521	0.0001811	458.2428449297151	23.389	0.47158	23.142	22.8	23.272	-0.24775					19	8	3	0	0	0	0.026272	1	8153	8153		90.135	15.206	1	18261000			2636	2088	1216	1236	2646	2646					0.010254882808908405
AETKDIPAA	9	Unmodified	_AETKDIPAA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	HCT116MG_D190212_S4	4	915.47802734375	1	915.478188	914.470912	0.57455	0.00052598	0.28949	0.00026502	0.86404	0.00079101	915.4784479293253	23.389	0.31421	23.142	22.905	23.22	-0.24775					8	5	2	0	0	0	0.064006	1	8197	8197		67.838	17.905	1	2621600			2637	2088	1216	1236	2647	2647					0.010254882808908405
AETKDIPAA	9	Unmodified	_AETKDIPAA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MATCH	HCT116MG_D190212_S1	1		2	458.242732	914.470912	0.064434	2.9526E-05	-0.038511	-1.7648E-05	0.025923	1.1879E-05	458.24260717505473	23.165	0.41633	23.165	22.898	23.314	0	0.018485	-0.00021497	NaN	90.135	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4864400			2638	2088	1216	1236							0.010254882808908405
AETKDIPAA	9	Unmodified	_AETKDIPAA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	458.242732	914.470912	0.11346	5.1994E-05	0.14873	6.8156E-05	0.2622	0.00012015	458.2427074239609	23.605	0.41529	23.221	22.988	23.403	-0.38324	0.074398	-4.336E-05	NaN	90.135	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51353000			2639	2088	1216	1236							0.010254882808908405
AETKDLLVA	9	Unmodified	_AETKDLLVA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	HCT116MG_D190212_S1	1	480.2741394042969	2	480.274032	958.533512	0.40607	0.00019502	-0.052269	-2.5103E-05	0.3538	0.00016992	480.2738908915881	37.632	0.31258	37.632	37.447	37.759	0					12	5	3	0	0	0	0.071914	1	14074	14074		63.961	2.6031	1	18922000			2640	4181	1217	1237	2648	2648					0.05258634349092972
AETKDLLVA	9	Unmodified	_AETKDLLVA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2742004394531	2	480.274032	958.533512	-0.0066102	-3.1747E-06	0.15915	7.6438E-05	0.15254	7.3263E-05	480.27405866629397	37.718	0.41132	37.615	37.435	37.847	-0.10318					17	7	3	0	0	0	0.064006	1	14138	14138		67.838	9.1593	1	174200000			2641	4181	1217	1237	2649	2649					0.05258634349092972
AETKDLLVA	9	Unmodified	_AETKDLLVA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	HCT116MG_D190212_S2	2	959.5408935546875	1	959.540788	958.533512	0.41298	0.00039627	0.38038	0.00036499	0.79336	0.00076126	959.540800079777	37.718	0.2567	37.615	37.486	37.743	-0.10318					7	4	2	0	0	0	0.064006	1	14160	14160		67.838	9.1593	1	30964000			2642	4181	1217	1237	2650	2650					0.05258634349092972
AETKDLLVA	9	Unmodified	_AETKDLLVA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	HCT116MG_D190212_S3	3	480.27392578125	2	480.274032	958.533512	0.31871	0.00015307	0.23676	0.00011371	0.55546	0.00026678	480.27403868972584	37.924	0.54976	37.622	37.491	38.04	-0.30137					49	19	4	0	0	0	0.064006	1	14000	14000		67.838	15.57	1	138040000			2643	4181	1217	1237	2651	2651					0.05258634349092972
AETKDLLVA	9	Unmodified	_AETKDLLVA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	HCT116MG_D190212_S3	3	959.5413818359375	1	959.540788	958.533512	0.7982	0.0007659	0.26569	0.00025494	1.0639	0.0010208	959.5410466509884	37.921	0.27136	37.619	37.51	37.781	-0.30137					16	12	2	0	0	0	0.071914	1	14029	14029		63.961	11.692	1	13526000			2644	4181	1217	1237	2652	2652					0.05258634349092972
AETKDLLVA	9	Unmodified	_AETKDLLVA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	HCT116MG_D190212_S4	4	481.11572265625	2	480.274032	958.533512	0.082222	3.9489E-05	0.25335	0.00012168	0.33557	0.00016117	480.27401655810974	38.038	0.47692	37.655	37.525	38.002	-0.38282					37	16	3	0	0	0	0.064006	2	13932	13890;13932		67.838	15.57	1	53831000			2645	4181	1217	1237	2653;2654	2654					0.05258634349092972
AETKDLLVA	9	Unmodified	_AETKDLLVA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	HCT116MG_D190212_S4	4	959.541748046875	1	959.540788	958.533512	0.33737	0.00032372	0.40084	0.00038463	0.73821	0.00070835	959.5410843106735	38.02	0.19256	37.638	37.568	37.76	-0.38283					11	7	2	0	0	0	0.045679	1	13928	13928		76.825	24.556	1	5858500			2646	4181	1217	1237	2655	2655					0.05258634349092972
AETLIVSQL	9	Unmodified	_AETLIVSQL_					0	0	0		tr|U7SZQ1|U7SZQ1_FUSNUEthanolamineutilizationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00828PE=4SV=1	tr|U7SZQ1|U7SZQ1_FUSNUEthanolamineutilizationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00828PE=4SV=1	tr|U7SZQ1|U7SZQ1_FUSNUEthanolamineutilizationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00828PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	487.75079345703125	2	487.281857	972.549162	0.24283	0.00011832	-0.50589	-0.00024651	-0.26307	-0.00012819	487.2817519385473	45.271	0.46624	45.179	44.996	45.462	-0.092472					13	8	3	0	0	0	0.15894	1	17300	17300		37.974	9.4872	1	151310000			2647	18536	1218	1238	2656	2656					0.06178920866148019
AETLLSQAV	9	Unmodified	_AETLLSQAV_					0	0	0		nc|ENSG00000241839|Q8TD55-2|PLEKHO2;ENSG00000241839|ENST00000323544|PLEKHO2	nc|ENSG00000241839|Q8TD55-2|PLEKHO2	nc|ENSG00000241839|Q8TD55-2|PLEKHO2	MSMS	HCT116MG_D190212_S3	3	466.2586975097656	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.336	1	28.13	27.63	28.63	-0.20593								0	0	0	0.56943	1	10250	10250		25.399	1.3787	1				2648	6545	1219	1239	2657	2657					0.03418061315005616
AETLMTVTDP	10	Oxidation (M)	_AETLM(Oxidation (M))TVTDP_		AETLM(1)TVTDP		AETLM(42)TVTDP	0	0	1		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	HCT116MG_D190212_S3	3	547.259521484375	2	547.257722	1092.50089	0.55645	0.00030452	1.756	0.000961	2.3125	0.0012655	547.2587651959124	25.961	0.93793	25.833	25.65	26.588	-0.12795					26	17	2	0	0	0	0.40515	1	9535	9535		41.84	12.758	1	6706200			2649	1454	1220	1240	2658	2658		25			-0.04165940836082882
AETNSPPP	8	Unmodified	_AETNSPPP_					0	0	0			REV__nc|ENSG00000089737|Q9GZR7-2|DDX24	REV__nc|ENSG00000089737|Q9GZR7-2|DDX24	MSMS	HCT116MG_D190212_S2	2	406.6927490234375	2	406.692875	811.371197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.814	1	17.457	16.957	17.957	-0.35647								0	0	0	0.8837	1	6086	6086		15.768	2.2603	1		+		2650	10975	1221	1241	2659	2659					-0.042033293330405286
AETPAREA	8	Unmodified	_AETPAREA_					0	0	0		ENST00000507335.1_1_5:14664934-14673895:+|nuORF;ENSG00000154124|ENST00000284274|OTULIN	ENST00000507335.1_1_5:14664934-14673895:+|nuORF	ENST00000507335.1_1_5:14664934-14673895:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	422.7107238769531	2	422.711599	843.408646	0.0067243	2.8424E-06	-0.90345	-0.0003819	-0.89673	-0.00037906	422.711206132148	16.145	0.20902	15.81	15.689	15.898	-0.33451					5	3	2	0	0	0	0.72231	1	5437	5437		20.415	1.1575	1	2124700			2651	4206	1222	1242	2660	2660					-0.019322380674339
AETPAREAA	9	Unmodified	_AETPAREAA_					0	0	0		ENST00000507335.1_1_5:14664934-14673895:+|nuORF;ENSG00000154124|ENST00000284274|OTULIN	ENST00000507335.1_1_5:14664934-14673895:+|nuORF	ENST00000507335.1_1_5:14664934-14673895:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	458.2313537597656	2	458.230156	914.445759	0.14604	6.6918E-05	0.68341	0.00031316	0.82945	0.00038008	458.2305557213701	16.693	0.26035	16.351	16.204	16.464	-0.34183					7	4	2	0	0	0	0.016412	1	5642	5642		100.09	21.363	1	8097800			2652	4206	1223	1243	2661	2661					-0.014885665216752386
AETPGTVSP	9	Unmodified	_AETPGTVSP_					0	0	0		ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	MULTI-MSMS	HCT116MG_D190212_S1	1	858.4207763671875	1	858.420339	857.413062	0.61284	0.00052608	-0.06522	-5.5986E-05	0.54762	0.00047009	858.4204611863544	25.205	0.47023	25.205	24.935	25.405	0					14	8	2	0	0	0	0.010304	1	9060	9060		112.59	19.771	1	5799100			2653	6069	1224	1244	2662	2662					-0.021347736445136434
AETPGTVSP	9	Unmodified	_AETPGTVSP_					0	0	0		ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	MULTI-MSMS	HCT116MG_D190212_S2	2	858.4216918945312	1	858.420339	857.413062	0.67766	0.00058172	0.22726	0.00019508	0.90492	0.0007768	858.4202960315997	25.543	0.6767	25.174	24.77	25.446	-0.36914					30	12	3	0	0	0	0.013464	2	9149	9149;9213		104.8	16.489	1	33774000			2654	6069	1224	1244	2663;2664	2663					-0.021347736445136434
AETPGTVSP	9	Unmodified	_AETPGTVSP_					0	0	0		ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	MULTI-MSMS	HCT116MG_D190212_S3	3	858.419677734375	1	858.420339	857.413062	0.82698	0.00070989	0.27082	0.00023248	1.0978	0.00094237	858.4204401799219	25.44	0.72897	25.334	24.891	25.62	-0.10618					23	13	2	0	0	0	0.010304	1	9016	9016		112.59	38.17	1	11387000			2655	6069	1224	1244	2665	2665					-0.021347736445136434
AETPLRKGA	9	Unmodified	_AETPLRKGA_					0	0	0			REV__nc|ENSG00000144455|Q8NBK3-3|SUMF1	REV__nc|ENSG00000144455|Q8NBK3-3|SUMF1	MSMS	HCT116MG_D190212_S4	4	471.7722473144531	2	471.771991	941.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.641	1	26.34	25.84	26.84	-0.30087								0	0	0	0.50556	1	9500	9500		28.487	1.6032	1		+		2656	17155	1225	1245	2666	2666					0.05632589646052111
AETQQPPA	8	Unmodified	_AETQQPPA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S2	2	421.2061767578125	2	421.20615	840.397747	0.067843	2.8576E-05	0.043027	1.8123E-05	0.11087	4.6699E-05	421.206079184292	17.353	0.73059	17.004	16.717	17.448	-0.34933					23	13	2	0	0	0	0.23195	1	5889	5889		67.344	5.9864	1	9421900			2657	1164	1226	1246	2667	2667					-0.02883640441712032
AETQQPPA	8	Unmodified	_AETQQPPA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S2	2	841.40576171875	1	841.405023	840.397747	0.75196	0.0006327	-0.14904	-0.0001254	0.60292	0.0005073	841.404979273202	17.353	0.78288	17.004	16.717	17.5	-0.34933					22	14	2	0	0	0	0.068362	1	5891	5891		103.75	25.599	1	7806600			2658	1164	1226	1246	2668	2668					-0.02883640441712032
AETQQPPA	8	Unmodified	_AETQQPPA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S3	3	421.20623779296875	2	421.20615	840.397747	-0.056474	-2.3787E-05	0.11533	4.8577E-05	0.058854	2.479E-05	421.20620983691407	16.879	0.72839	16.963	16.6	17.329	0.084467					25	13	3	0	0	0	0.23195	1	5595	5595		67.344	12.57	1	2610000			2659	1164	1226	1246	2669	2669					-0.02883640441712032
AETQQPPA	8	Unmodified	_AETQQPPA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S3	3	841.4060668945312	1	841.405023	840.397747	0.57855	0.0004868	0.052824	4.4446E-05	0.63138	0.00053124	841.4049350965689	16.871	0.72839	16.955	16.6	17.329	0.084469					21	13	2	0	0	0	0.12463	1	5609	5609		89.427	20.322	1	3868200			2660	1164	1226	1246	2670	2670					-0.02883640441712032
AETQQPPA	8	Unmodified	_AETQQPPA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S4	4	421.20611572265625	2	421.20615	840.397747	-0.28358	-0.00011945	0.27871	0.00011739	-0.0048732	-2.0526E-06	421.20619504163363	16.985	0.56904	16.818	16.608	17.177	-0.16664					14	10	2	0	0	0	0.31873	1	5606	5606		57.471	17.514	1	896370			2661	1164	1226	1246	2671	2671					-0.02883640441712032
AETQQPPAA	9	Unmodified	_AETQQPPAA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S1	1	456.7248229980469	2	456.724707	911.43486	0.0236	1.0779E-05	0.18655	8.5202E-05	0.21015	9.5981E-05	456.7247177001019	18.588	0.57319	18.588	18.402	18.975	0					28	10	4	0	0	0	0.0038833	1	6397	6397		152.41	52.613	1	37528000			2662	1164	1227	1247	2672	2672					-0.024399688959533705
AETQQPPAA	9	Unmodified	_AETQQPPAA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S1	1	912.442138671875	1	912.442137	911.43486	0.76631	0.00069921	0.086924	7.9313E-05	0.85323	0.00077853	912.4419412473028	18.636	0.41676	18.636	18.454	18.871	0					13	7	2	0	0	0	0.003706	1	6404	6404		155.03	62.373	1	11199000			2663	1164	1227	1247	2673	2673					-0.024399688959533705
AETQQPPAA	9	Unmodified	_AETQQPPAA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S2	2	456.72381591796875	2	456.724707	911.43486	-0.085874	-3.9221E-05	0.41478	0.00018944	0.32891	0.00015022	456.7247971226876	18.919	0.88559	18.55	18.314	19.2	-0.3695					44	16	4	0	0	0	0.0034935	1	6508	6508		166.45	59.261	1	184730000			2664	1164	1227	1247	2674	2674					-0.024399688959533705
AETQQPPAA	9	Unmodified	_AETQQPPAA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S2	2	912.44287109375	1	912.442137	911.43486	0.45747	0.00041741	0.34692	0.00031655	0.80439	0.00073396	912.442386382193	18.918	0.62564	18.549	18.314	18.94	-0.3695					28	11	4	0	0	0	0.0001067	1	6515	6515		198.25	68.478	1	55648000			2665	1164	1227	1247	2675	2675					-0.024399688959533705
AETQQPPAA	9	Unmodified	_AETQQPPAA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S3	3	456.7244567871094	2	456.724707	911.43486	0.31233	0.00014265	-0.088565	-4.045E-05	0.22376	0.0001022	456.7246047794222	18.519	0.62497	18.596	18.361	18.986	0.076334					27	11	3	0	0	0	0.0062667	1	6257	6257		126.57	33.913	1	36536000			2666	1164	1227	1247	2676	2676					-0.024399688959533705
AETQQPPAA	9	Unmodified	_AETQQPPAA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S3	3	912.4424438476562	1	912.442137	911.43486	0.71205	0.0006497	-0.033425	-3.0498E-05	0.67863	0.00061921	912.4419823609554	18.499	0.46874	18.575	18.361	18.83	0.076334					19	8	3	0	0	0	0.0035147	1	6279	6279		168.66	61.472	1	8321400			2667	1164	1227	1247	2677	2677					-0.024399688959533705
AETQQPPAA	9	Unmodified	_AETQQPPAA_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S4	4	456.7247009277344	2	456.724707	911.43486	0.12501	5.7097E-05	-0.16438	-7.5077E-05	-0.039366	-1.798E-05	456.72455913555666	18.666	0.41583	18.485	18.304	18.719	-0.18052					12	7	2	0	0	0	0.24973	1	6266	6266		36.044	6.9626	1	3703100			2668	1164	1227	1247	2678	2678					-0.024399688959533705
AETQQVVGRE	10	Unmodified	_AETQQVVGRE_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-MSMS	HCT116MG_D190212_S3	3	558.7857055664062	2	558.785827	1115.5571	0.26968	0.00015069	0.11109	6.2077E-05	0.38077	0.00021277	558.7857831495878	16.768	0.20816	16.852	16.704	16.912	0.084467					6	3	2	0	0	0	0.57664	1	5607	5607		29.841	1.3461	1	1679200	+		2669	10464	1228	1248	2679	2679					0.003944481156167967
AETRQARGPGA	11	Unmodified	_AETRQARGPGA_					0	0	0			REV__ENSG00000130701|ENST00000252998|RBBP8NL	REV__ENSG00000130701|ENST00000252998|RBBP8NL	MSMS	HCT116MG_D190212_S3	3	557.2295532226562	2	557.291611	1112.56867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.698	1	19.758	19.258	20.258	0.05983								0	0	0	0.93552	1	6770	6770		13.906	0	1		+		2670	11936	1229	1249	2680	2680					0.016886899296196134
AETRSPSPA	9	Unmodified	_AETRSPSPA_					0	0	0		ENST00000497470.1_1_1:155231875-155232025:-|nuORF;ENST00000480219.1_1_1:155231512-155232061:-|nuORF	ENST00000497470.1_1_1:155231875-155232025:-|nuORF	ENST00000497470.1_1_1:155231875-155232025:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	458.2308654785156	2	458.230156	914.445759	0.33423	0.00015316	1.4436	0.00066149	1.7778	0.00081464	458.23074670635845	15.71	0.20855	15.795	15.665	15.873	0.085423					5	3	2	0	0	0	0.11363	1	5189	5189		55.503	21.101	1	1226900			2671	8237	1230	1250	2681	2681					-0.0148856652166387
AETTSGTFLSA	11	Unmodified	_AETTSGTFLSA_					0	0	0		ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1	ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	MULTI-MSMS	HCT116MG_D190212_S2	2	543.2777709960938	2	542.761486	1083.50842	0.49088	0.00026643	0.061169	3.32E-05	0.55205	0.00029963	542.7615315287487	42.11	0.31114	42.042	41.861	42.172	-0.068199					8	5	2	0	0	0	0.31512	1	15929	15929		62.573	12.64	1	8597900			2672	2688	1231	1251	2682	2682					-0.029994652441246217
AETTSGTFLSA	11	Unmodified	_AETTSGTFLSA_					0	0	0		ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1	ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	MULTI-MSMS	HCT116MG_D190212_S3	3	542.7617797851562	2	542.761486	1083.50842	0.52278	0.00028374	0.24574	0.00013338	0.76852	0.00041712	542.76157274339	42.304	0.41639	42.001	41.728	42.144	-0.30352					10	7	2	0	0	0	0.31512	1	15768	15768		62.573	22.615	1	6592000			2673	2688	1231	1251	2683	2683					-0.029994652441246217
AETTSGTFLSA	11	Unmodified	_AETTSGTFLSA_					0	0	0		ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1	ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	MULTI-MSMS	HCT116MG_D190212_S3	3	1084.5159912109375	1	1084.5157	1083.50842	0.46086	0.00049981	0.24174	0.00026217	0.7026	0.00076198	1084.515733333005	42.302	0.31266	41.999	41.832	42.144	-0.30352					9	5	2	0	0	0	0.48186	1	15771	15771		47.749	26.002	1	4885800			2674	2688	1231	1251	2684	2684					-0.029994652441246217
AETVNAFLA	9	Unmodified	_AETVNAFLA_					0	0	0		ENST00000343470.8_2_4:4283598-4285408:-|nuORF	ENST00000343470.8_2_4:4283598-4285408:-|nuORF	ENST00000343470.8_2_4:4283598-4285408:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	935.4844360351562	1	935.483273	934.475997	0.70313	0.00065776	-0.15014	-0.00014045	0.55299	0.00051731	935.4829893693369	49.317	0.20956	49.001	48.87	49.079	-0.31596					6	3	2	0	0	0	0.023938	1	18583	18583		92.491	33.813	1	3895600			2675	7244	1232	1252	2685	2685					0.006137921435197313
AETVQARLP	9	Unmodified	_AETVQARLP_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	HCT116MG_D190212_S2	2	492.7773132324219	2	492.777274	983.539994	0.26879	0.00013245	-0.63509	-0.00031296	-0.3663	-0.0001805	492.77703609295224	35.522	0.50429	35.38	35.19	35.695	-0.14245					14	9	2	0	0	0	0.11023	1	13274	13274		56.177	4.5472	1	41089000	+		2676	17134	1233	1253	2686	2686					0.04756572300470907
AETVQARLP	9	Unmodified	_AETVQARLP_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	HCT116MG_D190212_S2	2	492.74261474609375	2	492.777274	983.539994	0.26879	0.00013245	-0.63509	-0.00031296	-0.3663	-0.0001805	492.77703609295224	35.522	0.50429	35.38	35.19	35.695	-0.14245					14	9	2	0	0	0	0.15759	1	13314	13314		39.95	5.548	1	41089000	+		2677	17134	1233	1253	2687	2687					0.04756572300470907
AETVQARLP	9	Unmodified	_AETVQARLP_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	HCT116MG_D190212_S3	3	492.77752685546875	2	492.777274	983.539994	0.44646	0.00022001	-0.63921	-0.00031499	-0.19275	-9.4982E-05	492.7770530742059	35.72	0.49393	35.421	35.289	35.783	-0.29922					22	15	2	0	0	0	0.11023	1	13161	13161		56.177	6.244	1	11630000	+		2678	17134	1233	1253	2688	2688					0.04756572300470907
AETVQARLP	9	Unmodified	_AETVQARLP_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	492.777274	983.539994	0.43393	0.00021383	-0.74247	-0.00036587	-0.30854	-0.00015204	492.77689696870027	35.831	0.36742	35.445	35.357	35.724	-0.38606	0.029525	-4.2493E-05	NaN	56.177	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6112600	+		2679	17134	1233	1253							0.04756572300470907
AETVQYWP	8	Unmodified	_AETVQYWP_					0	0	0			REV__ENST00000457643.1_X:151867294-151869150:+|nuORF	REV__ENST00000457643.1_X:151867294-151869150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	497.2370910644531	2	497.23745	992.460347	0.37013	0.00018404	-0.41715	-0.00020742	-0.047022	-2.3381E-05	497.23698421470476	17.51	0.41791	17.161	16.978	17.395	-0.34933					10	7	2	0	0	0	0.77285	1	5985	5985		14.582	1.0738	1	6501000	+		2680	15762	1234	1254	2689	2689					-0.03618494373529302
AETVTAGKEP	10	Unmodified	_AETVTAGKEP_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20;TCF20|p.P1561Lfs*54|1|0.31|ENSG00000100207|chr22:42210624-42210624|G/-|frameshift_variant;TCF20|p.K1579Nfs*36|1|0.18|ENSG00000100207|chr22:42210569-42210569|T/-|frameshift_variant;TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MSMS	HCT116MG_D190212_S2	2	501.7587585449219	2	501.758746	1001.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.022	1	22.636	22.136	23.136	-0.3852								0	0	0	0.81962	1	8185	8185		26.268	0.86883	1				2681	1674	1235	1255	2690	2690					0.0022485596406340846
AETYMWEHE	9	Unmodified	_AETYMWEHE_					0	0	0			REV__SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant	REV__SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	598.2399291992188	2	598.239864	1194.46517	0.58162	0.00034795	-0.29722	-0.00017781	0.28441	0.00017014	598.2397498876768	16.029	0.20892	15.695	15.585	15.794	-0.33451					5	3	2	0	0	0	0.65706	1	5395	5395		7.9102	2.1783	1	2345500	+		2682	12910	1236	1256	2691	2691					-0.12427978293044362
AEVADKRD	8	Unmodified	_AEVADKRD_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-2|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-2|MYSM1	MSMS	HCT116MG_D190212_S2	2	452.23016357421875	2	452.230156	902.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.06	1	16.711	16.211	17.211	-0.34933								0	0	0	0.16719	1	5782	5782		71.922	6.6873	1		+		2683	12883	1237	1257	2692	2692					-0.009365665216705565
AEVAGAGRLA	10	Unmodified	_AEVAGAGRLA_					0	0	0		ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF	ENST00000233615.6_2_2:74685568-74685718:+|nuORF	ENST00000233615.6_2_2:74685568-74685718:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	457.7564392089844	2	457.756341	913.498129	0.14812	6.7804E-05	0.43229	0.00019788	0.58041	0.00026569	457.7565168115794	26.36	0.31032	25.999	25.87	26.18	-0.36164					7	5	2	0	0	0	0.13161	1	9564	9564		67.838	9.1593	1	13740000			2684	6771	1238	1258	2693	2693					0.03792016611942017
AEVAGAGRLA	10	Unmodified	_AEVAGAGRLA_					0	0	0		ENST00000233615.6_2_2:74685568-74685718:+|nuORF;ENST00000466835.5_1_2:74685568-74686813:+|nuORF	ENST00000233615.6_2_2:74685568-74685718:+|nuORF	ENST00000233615.6_2_2:74685568-74685718:+|nuORF	MSMS	HCT116MG_D190212_S3	3	457.7562561035156	2	457.756341	913.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.194	1	26.056	25.556	26.556	-0.13782								0	0	0	0.78084	1	9386	9386		31.268	2.1868	1				2685	6771	1238	1258	2694	2694					0.03792016611942017
AEVAGILEP	9	Unmodified	_AEVAGILEP_					0	0	0		nc|ENSG00000122952|O95229-2|ZWINT;ENSG00000122952|ENST00000373944|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	MULTI-MSMS	HCT116MG_D190212_S2	2	898.48876953125	1	898.488024	897.480748	1.2625	0.0011343	0.13515	0.00012143	1.3977	0.0012558	898.4878050725406	47.515	0.77573	47.394	46.922	47.698	-0.12175					27	14	3	0	0	0	0.057285	1	18140	18140		71.134	6.8973	1	23874000			2686	9441	1239	1259	2695	2695					0.027906762862698997
AEVAGILEP	9	Unmodified	_AEVAGILEP_					0	0	0		nc|ENSG00000122952|O95229-2|ZWINT;ENSG00000122952|ENST00000373944|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	MULTI-MSMS	HCT116MG_D190212_S3	3	898.4889526367188	1	898.488024	897.480748	0.70589	0.00063424	0.25563	0.00022968	0.96153	0.00086392	898.4878950313669	47.749	0.56464	47.433	47.211	47.776	-0.31525					22	10	3	0	0	0	0.057285	1	17911	17911		71.134	6.8973	1	7213100			2687	9441	1239	1259	2696	2696					0.027906762862698997
AEVAGILEP	9	Unmodified	_AEVAGILEP_					0	0	0		nc|ENSG00000122952|O95229-2|ZWINT;ENSG00000122952|ENST00000373944|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	nc|ENSG00000122952|O95229-2|ZWINT	MULTI-MSMS	HCT116MG_D190212_S4	4	898.4888916015625	1	898.488024	897.480748	0.74749	0.00067161	-0.088318	-7.9353E-05	0.65917	0.00059226	898.4877782473977	47.69	0.48476	47.321	47.19	47.674	-0.36907					18	12	2	0	0	0	0.057285	1	17646	17646		71.134	0.41806	1	4206300			2688	9441	1239	1259	2697	2697					0.027906762862698997
AEVAGPGAAA	10	Unmodified	_AEVAGPGAAA_					0	0	0		nc|ENSG00000165138|Q68DC2-4|ANKS6;ENSG00000165138|ENST00000353234|ANKS6;nc|ENSG00000165138|Q68DC2-3|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	MULTI-MSMS	HCT116MG_D190212_S2	2	813.4109497070312	1	813.410108	812.402832	0.82109	0.00066788	0.40624	0.00033044	1.2273	0.00099833	813.4100685344438	23.102	0.26018	22.717	22.57	22.83	-0.3852					8	4	2	0	0	0	0.13038	1	8228	8228		68.081	10.609	1	9672100			2689	4752	1240	1260	2698	2698					-0.01087336579098519
AEVAGPGAAA	10	Unmodified	_AEVAGPGAAA_					0	0	0		nc|ENSG00000165138|Q68DC2-4|ANKS6;ENSG00000165138|ENST00000353234|ANKS6;nc|ENSG00000165138|Q68DC2-3|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	MULTI-MSMS	HCT116MG_D190212_S3	3	813.4111328125	1	813.410108	812.402832	0.88066	0.00071633	0.40793	0.00033182	1.2886	0.0010482	813.4104162635298	22.807	0.45603	22.788	22.543	22.999	-0.018869					13	8	2	0	0	0	0.042428	1	8010	8010		92.822	32.433	1	5710300			2690	4752	1240	1260	2699	2699					-0.01087336579098519
AEVAMSRD	8	Unmodified	_AEVAMSRD_					0	0	0		AluSz_dup93949|chr19:17813592-17813897:-|3.833991762002796|0.3588066818941023|3.42|481.0|13|3|sense;AluSx1_dup107630|chr19:41713933-41714240:+|1.182438838059655|0.1247445926159485|3.24|476.0|10|3|sense	AluSz_dup93949|chr19:17813592-17813897:-|3.833991762002796|0.3588066818941023|3.42|481.0|13|3|sense	AluSz_dup93949|chr19:17813592-17813897:-|3.833991762002796|0.3588066818941023|3.42|481.0|13|3|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	439.7052917480469	2	439.70546	877.396366	-0.2023	-8.8952E-05	0.17561	7.7218E-05	-0.026686	-1.1734E-05	439.705418892716	18.821	0.2607	18.457	18.321	18.581	-0.36325					9	4	3	0	0	0	0.64404	1	6519	6519		28.487	1.2636	1	4633500			2691	112	1241	1261	2700	2700					-0.04723597802126278
AEVAQHNRP	9	Unmodified	_AEVAQHNRP_					0	0	0		ENST00000574357.1_1_17:7761431-7761827:+|nuORF;nc|ENSG00000182224|Q6P9G0-2|CYB5D1;ENSG00000182224|ENST00000332439|CYB5D1	ENST00000574357.1_1_17:7761431-7761827:+|nuORF	ENST00000574357.1_1_17:7761431-7761827:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2625732421875	2	511.262322	1020.51009	0.16184	8.274E-05	0.22746	0.00011629	0.3893	0.00019903	511.2624933853438	15.163	0.31282	14.837	14.706	15.019	-0.32684					6	5	2	0	0	0	0.12994	1	5046	5046		52.268	29.532	1	1395500			2692	5663	1242	1262	2701	2701					0.0006563335513192214
AEVASEKLTA	10	Unmodified	_AEVASEKLTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	509.77423095703125	2	509.774396	1017.53424	0.43493	0.00022171	-0.82224	-0.00041916	-0.38731	-0.00019744	509.7741355092529	27.128	0.36872	26.775	26.606	26.975	-0.35254					11	6	3	0	0	0	0.09647	1	9855	9855		74.772	23.142	1	17427000			2693	3119	1243	1263	2702	2702					0.026174289981213406
AEVASEKLTA	10	Unmodified	_AEVASEKLTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	509.7743835449219	2	509.774396	1017.53424	0.21789	0.00011107	-0.055804	-2.8448E-05	0.16208	8.2625E-05	509.7743512623	27.005	0.31272	26.836	26.651	26.964	-0.16933					14	5	4	0	0	0	0.09647	1	9715	9715		74.772	25.245	1	20428000			2694	3119	1243	1263	2703	2703					0.026174289981213406
AEVASEKLTA	10	Unmodified	_AEVASEKLTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	509.774658203125	2	509.774396	1017.53424	0.25895	0.00013201	0.14058	7.1665E-05	0.39953	0.00020367	509.77442277437723	27.184	0.208	26.873	26.742	26.95	-0.3114					8	3	3	0	0	0	0.05194	1	9726	9726		85.764	43.809	1	7612200			2695	3119	1243	1263	2704	2704					0.026174289981213406
AEVASEKLTA	10	Unmodified	_AEVASEKLTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH	HCT116MG_D190212_S1	1		2	509.774396	1017.53424	0.3628	0.00018494	-0.73046	-0.00037237	-0.36767	-0.00018743	509.7744238931639	26.755	0.2604	26.755	26.553	26.813	0	-0.054423	-0.00058271	NaN	85.764	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1948600			2696	3119	1243	1263							0.026174289981213406
AEVDAAMAA	9	Oxidation (M)	_AEVDAAM(Oxidation (M))AA_		AEVDAAM(1)AA		AEVDAAM(85)AA	0	0	1		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S1	1	864.3773193359375	1	864.376759	863.369483	0.73373	0.00063422	-0.11677	-0.00010093	0.61696	0.00053329	864.3767791171259	21.791	0.20831	21.791	21.646	21.854	0					5	3	2	0	0	0	0.031005	1	7705	7705		85.357	24.967	1	8675600			2697	2769	1244	1264	2705	2705		57			-0.06766706413316115
AEVDAAMAA	9	Oxidation (M)	_AEVDAAM(Oxidation (M))AA_		AEVDAAM(1)AA		AEVDAAM(110)AA	0	0	1		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S2	2	864.3767700195312	1	864.376759	863.369483	0.79397	0.00068629	-0.11697	-0.00010111	0.677	0.00058518	864.3764929654014	22.098	0.41632	21.713	21.531	21.947	-0.38503					12	7	2	0	0	0	0.011506	1	7799	7799		109.63	27.765	1	50358000			2698	2769	1244	1264	2706	2706		57			-0.06766706413316115
AEVDAAMAA	9	Oxidation (M)	_AEVDAAM(Oxidation (M))AA_		AEVDAAM(1)AA		AEVDAAM(110)AA	0	0	1		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S3	3	864.37744140625	1	864.376759	863.369483	0.77402	0.00066905	-0.076173	-6.5842E-05	0.69785	0.00060321	864.3766554605312	21.792	0.52326	21.798	21.575	22.099	0.0056114					21	9	4	0	0	0	0.011506	1	7602	7602		109.63	27.765	1	29427000			2699	2769	1244	1264	2707	2707		57			-0.06766706413316115
AEVDAAMAA	9	Oxidation (M)	_AEVDAAM(Oxidation (M))AA_		AEVDAAM(1)AA		AEVDAAM(48)AA	0	0	1		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S4	4	865.3798217773438	1	864.376759	863.369483	0.77244	0.00066768	-0.094375	-8.1575E-05	0.67807	0.00058611	864.3766580728411	21.93	0.46752	21.711	21.529	21.997	-0.21832					19	8	3	0	0	0	0.14972	1	7598	7598		48.346	8.3885	1	30345000			2700	2769	1244	1264	2708	2708		57			-0.06766706413316115
AEVDAAMAA	9	Oxidation (M)	_AEVDAAM(Oxidation (M))AA_		AEVDAAM(1)AA		AEVDAAM(55)AA	0	0	1		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S4	4	432.69171142578125	2	432.692018	863.369483	0.24421	0.00010567	-0.32874	-0.00014224	-0.08453	-3.6575E-05	432.6917971213987	21.93	0.2598	21.711	21.581	21.841	-0.21832					6	4	2	0	0	0	0.11731	1	7625	7625		54.774	12.679	1	3484000			2701	2769	1244	1264	2709	2709		57			-0.06766706413316115
AEVDAAMAA	9	Unmodified	_AEVDAAMAA_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S1	1	848.3834228515625	1	848.381845	847.374568	0.82833	0.00070274	0.18736	0.00015895	1.0157	0.00086169	848.3817368601287	30.436	0.36359	30.436	30.296	30.659	0					11	6	2	0	0	0	0.050578	1	11163	11163		74.423	23.568	1	11156000			2702	2769	1244	1265	2710	2710					-0.05522402550707284
AEVDAAMAA	9	Unmodified	_AEVDAAMAA_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S2	2	848.3818969726562	1	848.381845	847.374568	0.56537	0.00047965	-0.073158	-6.2066E-05	0.49222	0.00041759	848.3817854143842	30.697	0.5688	30.43	30.251	30.819	-0.26704					25	10	4	0	0	0	0.050578	1	11287	11287		74.423	26.077	1	269660000			2703	2769	1244	1265	2711	2711					-0.05522402550707284
AEVDAAMAA	9	Unmodified	_AEVDAAMAA_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S3	3	848.3816528320312	1	848.381845	847.374568	0.63793	0.0005412	-0.22182	-0.00018819	0.41611	0.00035302	848.3817760390485	30.79	0.87313	30.53	30.358	31.231	-0.26071					39	16	4	0	0	0	0.050578	1	11204	11204		74.423	26.077	1	197390000			2704	2769	1244	1265	2712	2712					-0.05522402550707284
AEVDAAMAA	9	Unmodified	_AEVDAAMAA_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S4	4	848.3831787109375	1	848.381845	847.374568	0.62243	0.00052806	-0.02286	-1.9394E-05	0.59957	0.00050866	848.3818693226411	30.903	0.71033	30.539	30.371	31.082	-0.36416					29	13	4	0	0	0	0.050578	2	11175	11175;11372		74.423	26.077	1	81169000			2705	2769	1244	1265	2713;2714	2713					-0.05522402550707284
AEVDGATDPPL	11	Unmodified	_AEVDGATDPPL_					0	0	0			REV__ENST00000468135.5_1_1:32542222-32557503:+|nuORF	REV__ENST00000468135.5_1_1:32542222-32557503:+|nuORF	MSMS	HCT116MG_D190212_S4	4	542.7609252929688	2	542.761486	1083.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.436	1	42.061	41.561	42.561	-0.37565								0	0	0	0.88801	1	15597	15597		21.537	1.0834	1		+		2706	15841	1245	1266	2715	2715					-0.02999465244147359
AEVDKLRAA	9	Unmodified	_AEVDKLRAA_					0	0	0		ENST00000487091.1_1_7:73790414-73795297:+|nuORF;nc|ENSG00000106665|Q9UDT6-2|CLIP2;ENSG00000106665|ENST00000223398|CLIP2	ENST00000487091.1_1_7:73790414-73795297:+|nuORF	ENST00000487091.1_1_7:73790414-73795297:+|nuORF	MSMS	HCT116MG_D190212_S2	2	486.77734375	2	486.777274	971.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.557	1	23.174	22.674	23.674	-0.38324								0	0	0	0.24671	1	8401	8401		43.982	21.246	1				2707	2091	1246	1267	2716	2716					0.05308572300452852
AEVDKLRAA	9	Unmodified	_AEVDKLRAA_					0	0	0		ENST00000487091.1_1_7:73790414-73795297:+|nuORF;nc|ENSG00000106665|Q9UDT6-2|CLIP2;ENSG00000106665|ENST00000223398|CLIP2	ENST00000487091.1_1_7:73790414-73795297:+|nuORF	ENST00000487091.1_1_7:73790414-73795297:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	486.77764892578125	2	486.777274	971.539994	0.06861	3.3398E-05	0.26528	0.00012913	0.33389	0.00016253	486.7774556026361	22.977	0.35848	22.958	22.797	23.156	-0.018869					11	6	3	0	0	0	0.06555	1	8098	8098		67.081	14.812	1	10234000			2708	2091	1246	1267	2717	2717					0.05308572300452852
AEVDKLRAA	9	Unmodified	_AEVDKLRAA_					0	0	0		ENST00000487091.1_1_7:73790414-73795297:+|nuORF;nc|ENSG00000106665|Q9UDT6-2|CLIP2;ENSG00000106665|ENST00000223398|CLIP2	ENST00000487091.1_1_7:73790414-73795297:+|nuORF	ENST00000487091.1_1_7:73790414-73795297:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	486.7774353027344	2	486.777274	971.539994	-0.27371	-0.00013323	0.84611	0.00041187	0.5724	0.00027863	486.77764506812986	23.247	0.21095	23	22.853	23.063	-0.24775					5	3	2	0	0	0	0.07468	1	8152	8152		63.227	19.369	1	5955600			2709	2091	1246	1267	2718	2718					0.05308572300452852
AEVDKLRAA	9	Unmodified	_AEVDKLRAA_					0	0	0		ENST00000487091.1_1_7:73790414-73795297:+|nuORF;nc|ENSG00000106665|Q9UDT6-2|CLIP2;ENSG00000106665|ENST00000223398|CLIP2	ENST00000487091.1_1_7:73790414-73795297:+|nuORF	ENST00000487091.1_1_7:73790414-73795297:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	486.777274	971.539994	0.22933	0.00011163	-0.25242	-0.00012287	-0.023091	-1.124E-05	486.7774298319679	23.028	0.15637	23.028	22.949	23.106	0	0.032513	-0.00077251	NaN	67.081	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1586300			2710	2091	1246	1267							0.05308572300452852
AEVDPDTILKA	11	Unmodified	_AEVDPDTILKA_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MSMS	HCT116MG_D190212_S2	2	586.3142700195312	2	586.313886	1170.61322	0.87078	0.00051055	-0.51368	-0.00030118	0.35709	0.00020937	586.3134632383446	43.681	0.46378	43.603	43.298	43.762	-0.078369					20	8	4	0	0	0	0.26087	1	16547	16547		68.484	42.216	1	63550000			2711	1679	1247	1268	2719	2719					0.03473656232426947
AEVDPDTILKA	11	Unmodified	_AEVDPDTILKA_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MSMS	HCT116MG_D190212_S3	3	586.314453125	2	586.313886	1170.61322	0.57341	0.0003362	0.075579	4.4313E-05	0.64899	0.00038051	586.3139262172663	43.885	0.46943	43.579	43.292	43.761	-0.30616					19	8	3	0	0	0	0.033687	1	16373	16373		109.15	75.701	1	12982000			2712	1679	1247	1268	2720	2720					0.03473656232426947
AEVDPDTILKA	11	Unmodified	_AEVDPDTILKA_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MSMS	HCT116MG_D190212_S4	4	586.3154907226562	2	586.313886	1170.61322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.995	1	43.621	43.121	44.121	-0.37373								0	0	0	0.30665	1	16192	16192		59.013	37.476	1				2713	1679	1247	1268	2721	2721					0.03473656232426947
AEVEGLGKGVA	11	Unmodified	_AEVEGLGKGVA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2821655273438	2	515.282389	1028.55022	0.55249	0.00028469	-0.64102	-0.00033031	-0.088538	-4.5622E-05	515.2824619538798	30.893	0.5206	30.893	30.659	31.18	0					17	9	3	0	0	0	0.062695	1	11350	11350		96.034	44.405	1	15100000			2714	5492	1248	1269	2722	2722					0.03709135235044414
AEVEGLGKGVA	11	Unmodified	_AEVEGLGKGVA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2824096679688	2	515.282389	1028.55022	0.3006	0.0001549	-1.4365	-0.00074021	-1.1359	-0.00058532	515.2823389540162	31.137	0.5164	30.87	30.716	31.232	-0.26704					22	9	3	0	0	0	0.036448	1	11478	11478		115.06	40.859	1	95744000			2715	5492	1248	1269	2723	2723					0.03709135235044414
AEVEGLGKGVA	11	Unmodified	_AEVEGLGKGVA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	1029.5594482421875	1	1029.5575	1028.55022	0.43608	0.00044897	0.85672	0.00088204	1.2928	0.001331	1029.557522016042	31.141	0.25804	30.874	30.716	30.974	-0.26704					6	4	2	0	0	0	0.012683	1	11513	11513		135.72	70.245	1	7509200			2716	5492	1248	1269	2724	2724					0.03709135235044414
AEVEGLGKGVA	11	Unmodified	_AEVEGLGKGVA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2823486328125	2	515.282389	1028.55022	0.15876	8.1804E-05	-1.7627	-0.00090826	-1.6039	-0.00082646	515.282323663748	31.352	0.52238	31.083	30.805	31.327	-0.26862					29	9	5	0	0	0	0.031913	1	11416	11416		105.35	48.096	1	38086000			2717	5492	1248	1269	2725	2725					0.03709135235044414
AEVEGLGKGVA	11	Unmodified	_AEVEGLGKGVA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S4	4	515.282470703125	2	515.282389	1028.55022	0.17861	9.2035E-05	-2.5347	-0.0013061	-2.3561	-0.001214	515.282233808498	31.503	0.46766	31.132	30.868	31.335	-0.37026					19	8	3	0	0	0	0.032082	1	11405	11405		101.54	26.614	1	8643500			2718	5492	1248	1269	2726	2726					0.03709135235044414
AEVEHVVNA	9	Unmodified	_AEVEHVVNA_					0	0	0		ENST00000577286.5_1_17:79993838-79994415:-|nuORF;ENST00000579842.5_1_17:79993838-79994531:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	484.245849609375	2	484.245806	966.47706	0.25066	0.00012138	0.25962	0.00012572	0.51028	0.0002471	484.2458495470664	25.744	0.41826	25.744	25.509	25.927	0					15	7	3	0	0	0	0.0040527	1	9275	9275		149.91	91.235	1	83289000			2719	5091	1249	1270	2727	2727					-0.0075199348757450934
AEVEHVVNA	9	Unmodified	_AEVEHVVNA_					0	0	0		ENST00000577286.5_1_17:79993838-79994415:-|nuORF;ENST00000579842.5_1_17:79993838-79994531:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.2491455078125	2	484.245806	966.47706	0.43559	0.00021093	0.11928	5.776E-05	0.55487	0.00026869	484.245833510268	26.101	0.51843	25.74	25.506	26.024	-0.36164					27	9	4	0	0	0	0.0050238	1	9414	9414		137.42	78.745	1	465210000			2720	5091	1249	1270	2728	2728					-0.0075199348757450934
AEVEHVVNA	9	Unmodified	_AEVEHVVNA_					0	0	0		ENST00000577286.5_1_17:79993838-79994415:-|nuORF;ENST00000579842.5_1_17:79993838-79994531:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	484.24591064453125	2	484.245806	966.47706	0.30141	0.00014596	0.20246	9.8042E-05	0.50387	0.000244	484.2458331073124	25.901	0.67767	25.773	25.442	26.12	-0.12795					30	12	5	0	0	0	0.011082	1	9251	9251		110.67	46.438	1	93917000			2721	5091	1249	1270	2729	2729					-0.0075199348757450934
AEVEHVVNA	9	Unmodified	_AEVEHVVNA_					0	0	0		ENST00000577286.5_1_17:79993838-79994415:-|nuORF;ENST00000579842.5_1_17:79993838-79994531:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	967.4837036132812	1	967.484336	966.47706	0.70928	0.00068622	-0.65601	-0.00063468	0.053274	5.1542E-05	967.4835665376467	25.877	0.26078	25.749	25.598	25.859	-0.12795					6	4	2	0	0	0	0.0201	1	9285	9285		96.367	50.346	1	2756600			2722	5091	1249	1270	2730	2730					-0.0075199348757450934
AEVEHVVNA	9	Unmodified	_AEVEHVVNA_					0	0	0		ENST00000577286.5_1_17:79993838-79994415:-|nuORF;ENST00000579842.5_1_17:79993838-79994531:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	484.2458190917969	2	484.245806	966.47706	0.055688	2.6967E-05	0.39696	0.00019223	0.45265	0.0002192	484.2459836020559	26.092	0.26031	25.802	25.672	25.932	-0.29022					8	4	2	0	0	0	0.011082	1	9281	9281		110.67	55.901	1	15559000			2723	5091	1249	1270	2731	2731					-0.0075199348757450934
AEVEHVVNA	9	Unmodified	_AEVEHVVNA_					0	0	0		ENST00000577286.5_1_17:79993838-79994415:-|nuORF;ENST00000579842.5_1_17:79993838-79994531:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	967.484336	966.47706	0.89877	0.00086955	-0.60453	-0.00058487	0.29425	0.00028468	967.4837079132877	26.101	0.25996	25.74	25.61	25.87	-0.36164	-0.0049355	6.5213E-06	NaN	96.367	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46496000			2724	5091	1249	1270							-0.0075199348757450934
AEVEPQSQP	9	Unmodified	_AEVEPQSQP_					0	0	0		QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant;ENSG00000198218|ENST00000395443|QRICH1;ENST00000479449.1_1_3:49070551-49094468:-|nuORF	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	492.7353210449219	2	492.735271	983.45599	0.066559	3.2796E-05	0.148	7.2925E-05	0.21456	0.00010572	492.7353525014467	21.208	0.26087	21.226	21.063	21.323	0.018446					8	4	2	0	0	0	0.032914	1	7371	7371		83.429	31.16	1	5528100			2725	6215	1250	1271	2732	2732					-0.036400035870883585
AEVETRIEA	9	Unmodified	_AEVETRIEA_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	HCT116MG_D190212_S1	1	509.26397705078125	2	509.264196	1016.51384	0.49192	0.00025052	-0.41953	-0.00021365	0.072399	3.687E-05	509.2639522443097	28.034	0.20829	28.034	27.904	28.113	0					6	3	2	0	0	0	0.16143	1	10215	10215		46.022	7.8467	1	10306000			2726	2355	1251	1272	2733	2733					0.006242583383254896
AEVETRIEA	9	Unmodified	_AEVETRIEA_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2641906738281	2	509.264196	1016.51384	0.33064	0.00016838	-0.12011	-6.1168E-05	0.21053	0.00010722	509.2640390841532	28.443	0.31053	28.114	27.874	28.184	-0.32987					10	5	3	0	0	0	0.0158	1	10380	10380		100.71	35.474	1	56256000			2727	2355	1251	1272	2734	2734					0.006242583383254896
AEVETRIEA	9	Unmodified	_AEVETRIEA_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	HCT116MG_D190212_S3	3	509.26434326171875	2	509.264196	1016.51384	0.21979	0.00011193	0.21714	0.00011058	0.43693	0.00022251	509.26428020125445	28.405	0.41718	28.199	28.02	28.437	-0.20593					15	7	3	0	0	0	0.035298	1	10283	10283		81.915	24.193	1	22415000			2728	2355	1251	1272	2735	2735					0.006242583383254896
AEVETRIEA	9	Unmodified	_AEVETRIEA_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	HCT116MG_D190212_S4	4	509.2641906738281	2	509.264196	1016.51384	0.14984	7.6308E-05	-0.13862	-7.0592E-05	0.011223	5.7154E-06	509.2641074032823	28.578	0.2595	28.246	28.116	28.376	-0.33138					8	4	2	0	0	0	0.069943	1	10284	10284		64.927	23.087	1	9853100			2729	2355	1251	1272	2736	2736					0.006242583383254896
AEVGGSPEV	9	Unmodified	_AEVGGSPEV_					0	0	0		AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|1|1|sense;AluSx1_dup14869|chr2:159900847-159901138:-|1.0392758270608995|0.1270827311353014|3.03|478.0|1|1|sense;ENST00000357585.3_2_17:71167612-71167879:+|nuORF;ENST00000489142.5_1_10:114207101-114244859:+|nuORF	AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|1|1|sense	AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|1|1|sense	MULTI-MSMS	HCT116MG_D190212_S3	3	844.404541015625	1	844.404689	843.397412	0.77126	0.00065126	-0.23423	-0.00019778	0.53704	0.00045348	844.4042732596647	28.409	0.20852	28.203	28.125	28.333	-0.20593					5	3	2	0	0	0	0.042978	1	10308	10308		78.149	29.804	1	3698400			2730	108	1252	1273	2737	2737					-0.0305506016156869
AEVGRGRREPA	11	Unmodified	_AEVGRGRREPA_					0	0	0		ENSG00000176396|ENST00000390658|EID2;EID2|p.L208*|1|0.39|ENSG00000176396|chr19:39539457-39539457|A/-|frameshift_variant;nc|ENSG00000176396|Q8N6I1-2|EID2	ENSG00000176396|ENST00000390658|EID2	ENSG00000176396|ENST00000390658|EID2	MULTI-MSMS	HCT116MG_D190212_S2	2	400.575439453125	3	399.886415	1196.63742	-0.16472	-6.5869E-05	-0.031932	-1.2769E-05	-0.19665	-7.8638E-05	399.8863926036323	14.538	0.71127	14.218	14.002	14.714	-0.31952					29	13	3	0	0	0	0.375	2	4748	4730;4748		47.053	14.436	1	21475000			2731	765	1253	1274	2738;2739	2739					0.04696354229326971
AEVGYDVFCLP	11	Unmodified	_AEVGYDVFCLP_					0	0	0			REV__TMEM245|p.K389Sfs*12|1|0.37|ENSG00000106771|chr9:109087327-109087327|T/-|frameshift_variant	REV__TMEM245|p.K389Sfs*12|1|0.37|ENSG00000106771|chr9:109087327-109087327|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	606.3232421875	2	606.783907	1211.55326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.128	1	17.953	17.453	18.453	-0.17501								0	0	0	0.94416	1	6063	6063		9.3831	0	1		+		2732	11309	1254	1275	2740	2740					-0.04405357702466972
AEVISDNYKA	10	Unmodified	_AEVISDNYKA_					0	0	0			REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	REV__tr|U7T0A2|U7T0A2_FUSNUPhosphate:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00913PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	555.27685546875	2	555.277303	1108.54005	0.65706	0.00036485	-0.22027	-0.00012231	0.43679	0.00024254	555.2771521830291	33.339	0.35632	32.957	32.909	33.265	-0.38223					15	12	2	0	0	0	0.77749	1	12141	12141		13.906	1.6654	1	6554400	+		2733	17893	1255	1276	2741	2741					-0.009874724901919762
AEVKEEPTG	9	Unmodified	_AEVKEEPTG_					0	0	0			REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2369689941406	2	480.237647	958.460741	0.071171	3.4179E-05	-1.3808	-0.00066312	-1.3096	-0.00062894	480.2373426922851	15.268	0.2608	14.941	14.81	15.071	-0.32684					7	4	3	0	0	0	0.24895	1	5065	5065		36.127	3.3413	1	4316600	+		2734	17270	1256	1277	2742	2742					-0.020151194443201348
AEVKEEPTG	9	Unmodified	_AEVKEEPTG_					0	0	0			REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	MULTI-MATCH	HCT116MG_D190212_S1	1		2	480.237647	958.460741	0.20358	9.7766E-05	-1.0077	-0.00048392	-0.80408	-0.00038615	480.23716661953966	15.249	0.15683	15.249	15.118	15.275	0	0.15419	3.9904E-05	NaN	36.127	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2115100	+		2735	17270	1256	1277							-0.020151194443201348
AEVKEEPTG	9	Unmodified	_AEVKEEPTG_					0	0	0			REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	480.237647	958.460741	0.071171	3.4179E-05	-1.3808	-0.00066312	-1.3096	-0.00062894	480.2373426922851	15.268	0.2608	14.941	14.81	15.071	-0.32684	-0.15419	-0.00031851	NaN	36.127	7	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4316600	+		2736	17270	1256	1277							-0.020151194443201348
AEVKGSVSA	9	Unmodified	_AEVKGSVSA_					0	0	0		ENST00000578865.5_1_17:73623504-73624919:-|nuORF;ENST00000443199.6_1_17:73623504-73629591:-|nuORF;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	424.2293395996094	2	424.229625	846.444697	-0.028554	-1.2113E-05	0.06851	2.9064E-05	0.039957	1.6951E-05	424.2296014867039	18.376	0.31244	18.376	18.246	18.558	0					7	5	2	0	0	0	0.094138	1	6338	6338		59.368	11.62	1	3516600			2737	2161	1257	1278	2743	2743					0.015332191094216796
AEVKGSVSA	9	Unmodified	_AEVKGSVSA_					0	0	0		ENST00000578865.5_1_17:73623504-73624919:-|nuORF;ENST00000443199.6_1_17:73623504-73629591:-|nuORF;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	424.2296142578125	2	424.229625	846.444697	-0.1628	-6.9063E-05	0.30455	0.0001292	0.14176	6.0137E-05	424.2296285149446	18.868	0.6258	18.504	18.372	18.998	-0.36342					19	11	3	0	0	0	0.032914	1	6534	6534		83.429	31.16	1	24099000			2738	2161	1257	1278	2744	2744					0.015332191094216796
AEVKGSVSA	9	Unmodified	_AEVKGSVSA_					0	0	0		ENST00000578865.5_1_17:73623504-73624919:-|nuORF;ENST00000443199.6_1_17:73623504-73629591:-|nuORF;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	847.4525146484375	1	847.451973	846.444697	0.47173	0.00039977	0.30603	0.00025935	0.77776	0.00065912	847.4520608738895	18.866	0.31329	18.503	18.373	18.686	-0.36325					8	5	2	0	0	0	0.043159	1	6539	6539		78.06	32.361	1	10140000			2739	2161	1257	1278	2745	2745					0.015332191094216796
AEVKGSVSA	9	Unmodified	_AEVKGSVSA_					0	0	0		ENST00000578865.5_1_17:73623504-73624919:-|nuORF;ENST00000443199.6_1_17:73623504-73629591:-|nuORF;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	424.2296142578125	2	424.229625	846.444697	-0.017734	-7.5234E-06	0.20415	8.6607E-05	0.18642	7.9084E-05	424.2296749740166	18.05	0.46833	18.127	17.945	18.413	0.076334					14	8	2	0	0	0	0.029121	1	6109	6109		87.258	43.4	1	10731000			2740	2161	1257	1278	2746	2746					0.015332191094216796
AEVKGSVSA	9	Unmodified	_AEVKGSVSA_					0	0	0		ENST00000578865.5_1_17:73623504-73624919:-|nuORF;ENST00000443199.6_1_17:73623504-73629591:-|nuORF;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	847.4530639648438	1	847.451973	846.444697	0.59467	0.00050395	-0.12845	-0.00010885	0.46622	0.0003951	847.4522572640477	18.05	0.31201	18.127	17.997	18.309	0.076334					6	5	2	0	0	0	0.029121	1	6120	6120		87.258	39.51	1	2587900			2741	2161	1257	1278	2747	2747					0.015332191094216796
AEVKGSVSA	9	Unmodified	_AEVKGSVSA_					0	0	0		ENST00000578865.5_1_17:73623504-73624919:-|nuORF;ENST00000443199.6_1_17:73623504-73629591:-|nuORF;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	424.2301330566406	2	424.229625	846.444697	0.064814	2.7496E-05	0.19694	8.3549E-05	0.26176	0.00011104	424.2296301319145	18.302	0.30943	18.121	17.994	18.304	-0.18052					9	5	2	0	0	0	0.032914	1	6140	6140		83.429	37.408	1	4789700			2742	2161	1257	1278	2748	2748					0.015332191094216796
AEVKKMEKEAP	11	Unmodified	_AEVKKMEKEAP_					0	0	0			REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	630.3344116210938	2	630.336838	1258.65912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.321	1	24.248	23.748	24.748	-0.072729								0	0	0	0.92983	1	8631	8631		16.149	1.7437	1		+		2743	18012	1258	1279	2749	2749					0.04013978143029817
AEVKKPAAA	9	Unmodified	_AEVKKPAAA_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	HCT116MG_D190212_S2	2	442.7635803222656	2	442.763635	883.512717	0.046652	2.0656E-05	0.10605	4.6953E-05	0.1527	6.7609E-05	442.76361673211477	15.841	0.46943	15.507	15.168	15.637	-0.33451					13	8	2	0	0	0	0.05892	1	5274	5274		70.332	30.382	1	4692100			2744	4048	1259	1280	2750	2750					0.0663008876007325
AEVKKPAAA	9	Unmodified	_AEVKKPAAA_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	442.763635	883.512717	0.075392	3.3381E-05	0.38195	0.00016911	0.45734	0.00020249	442.7636412186877	15.596	0.20833	15.596	15.432	15.64	0	0.044983	0.0002054	NaN	70.332	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	898960			2745	4048	1259	1280							0.0663008876007325
AEVKQELAA	9	Unmodified	_AEVKQELAA_					0	0	0		ENST00000505186.1_1_4:2743986-2747794:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000502256.1_1_4:2746342-2746588:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	479.7635803222656	2	479.763832	957.513111	0.25165	0.00012073	-0.42049	-0.00020174	-0.16883	-8.1E-05	479.76360045638864	25.321	0.26036	24.945	24.816	25.076	-0.37521					9	4	3	0	0	0	0.026272	1	9126	9126		90.135	30.061	1	22873000			2746	5036	1260	1281	2751	2751					0.032654636892857525
AEVKQELAA	9	Unmodified	_AEVKQELAA_					0	0	0		ENST00000505186.1_1_4:2743986-2747794:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000502256.1_1_4:2746342-2746588:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	479.7635803222656	2	479.763832	957.513111	0.30796	0.00014775	0.0074676	3.5827E-06	0.31543	0.00015133	479.76370027223277	24.971	0.41677	24.865	24.631	25.048	-0.10618					16	7	3	0	0	0	0.0068427	1	8887	8887		121.53	28.881	1	18927000			2747	5036	1260	1281	2752	2752					0.032654636892857525
AEVKQELAA	9	Unmodified	_AEVKQELAA_					0	0	0		ENST00000505186.1_1_4:2743986-2747794:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000502256.1_1_4:2746342-2746588:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	479.763916015625	2	479.763832	957.513111	0.50078	0.00024026	-0.12839	-6.1598E-05	0.37239	0.00017866	479.76364128501297	25.208	0.26	24.928	24.746	25.006	-0.27958					10	4	3	0	0	0	0.011132	1	8922	8922		110.55	47.98	1	5240800			2748	5036	1260	1281	2753	2753					0.032654636892857525
AEVKQELAA	9	Unmodified	_AEVKQELAA_					0	0	0		ENST00000505186.1_1_4:2743986-2747794:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000502256.1_1_4:2746342-2746588:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	479.763832	957.513111	0.17129	8.2176E-05	0.8932	0.00042853	1.0645	0.0005107	479.764035241387	24.856	0.20938	24.856	24.725	24.935	0	-0.042529	0.00097545	NaN	121.53	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2615700			2749	5036	1260	1281							0.032654636892857525
AEVLEEEAP	9	Unmodified	_AEVLEEEAP_					0	0	0			REV__FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant	REV__FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7369079589844	2	493.73748	985.460406	0.22791	0.00011253	-0.79808	-0.00039404	-0.57018	-0.00028152	493.73687945627137	20.271	0.26192	19.891	19.761	20.023	-0.37949					7	4	2	0	0	0	0.57626	1	7104	7104		12.532	0	1	9788300	+		2750	10734	1261	1282	2754	2754					-0.03290539164197526
AEVLEEEAP	9	Unmodified	_AEVLEEEAP_					0	0	0			REV__FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant	REV__FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	493.73748	985.460406	0.23707	0.00011705	-0.80918	-0.00039952	-0.5721	-0.00028247	493.73711916201296	19.574	0.15656	19.574	19.495	19.652	0	-0.15877	-9.3405E-07	NaN	12.532	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3992800	+		2751	10734	1261	1282							-0.03290539164197526
AEVMVLERP	9	Unmodified	_AEVMVLERP_					0	0	0		ROBO3|p.A248V|1|0.14|ENSG00000154134|chr11:124870045-124870045|C/T|missense_variant;ROBO3|p.P376Tfs*35|1|0.25|ENSG00000154134|chr11:124871098-124871099|-/C|frameshift_variant;nc|ENSG00000154134|Q96MS0-2|ROBO3;ROBO3|p.D1059Tfs*9|1|0.29|ENSG00000154134|chr11:124878121-124878121|G/-|frameshift_variant;ENSG00000154134|ENST00000397801|ROBO3	ROBO3|p.A248V|1|0.14|ENSG00000154134|chr11:124870045-124870045|C/T|missense_variant	ROBO3|p.A248V|1|0.14|ENSG00000154134|chr11:124870045-124870045|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	522.2831420898438	2	522.281334	1042.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.439	1	21.221	20.721	21.721	-0.21832								0	0	0	0.69648	1	7401	7401		19.257	4.4187	1				2752	4209	1262	1283	2755	2755					0.02854383225599122
AEVNGKKGYVP	11	Unmodified	_AEVNGKKGYVP_					0	0	0		nc|ENSG00000107554|Q6XZF7-2|DNMBP;ENSG00000107554|ENST00000324109|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	MSMS	HCT116MG_D190212_S2	2	581.3170166015625	2	581.316763	1160.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.913	1	23.529	23.029	24.029	-0.38324								0	0	0	0.79559	1	8545	8545		33.445	5.8161	1				2753	2116	1263	1284	2756	2756					0.04508799534755781
AEVNVKGL	8	Unmodified	_AEVNVKGL_					0	0	0		nc|ENSG00000152936|Q8N9Z9-2|LMNTD1;nc|ENSG00000152936|Q8N9Z9-3|LMNTD1;nc|ENSG00000152936|Q8N9Z9-4|LMNTD1;nc|ENSG00000152936|Q8N9Z9|LMNTD1;ENSG00000152936|ENST00000458174|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	MSMS	HCT116MG_D190212_S1	1	415.2423400878906	2	415.242535	828.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.564	1	24.564	24.064	25.064	0								0	0	0	0.43258	1	8799	8799		46.921	2.5139	1				2754	4166	1264	1285	2757	2757					0.049421133517171256
AEVNVKGL	8	Unmodified	_AEVNVKGL_					0	0	0		nc|ENSG00000152936|Q8N9Z9-2|LMNTD1;nc|ENSG00000152936|Q8N9Z9-3|LMNTD1;nc|ENSG00000152936|Q8N9Z9-4|LMNTD1;nc|ENSG00000152936|Q8N9Z9|LMNTD1;ENSG00000152936|ENST00000458174|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	MSMS	HCT116MG_D190212_S3	3	415.2425231933594	2	415.242535	828.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.538	1	24.455	23.955	24.955	-0.083694								0	0	0	0.58904	1	8719	8719		38.151	5.8457	1				2755	4166	1264	1285	2758	2758					0.049421133517171256
AEVPKRAF	8	Unmodified	_AEVPKRAF_					0	0	0			REV__nc|ENSG00000149262|Q96HW7-2|INTS4	REV__nc|ENSG00000149262|Q96HW7-2|INTS4	MULTI-MSMS	HCT116MG_D190212_S3	3	459.2638244628906	2	459.263802	916.513051	0.41862	0.00019225	-0.061961	-2.8456E-05	0.35665	0.0001638	459.2636722059433	33.779	0.20734	33.489	33.408	33.615	-0.29013					8	3	3	0	0	0	0.66231	1	12434	12434		26.884	1.4843	1	6256300	+		2756	12561	1265	1286	2759	2759					0.051455084799385986
AEVPPPFDPVL	11	Unmodified	_AEVPPPFDPVL_					0	0	0			REV__ENSG00000132825|ENST00000370996|PPP1R3D	REV__ENSG00000132825|ENST00000370996|PPP1R3D	MSMS	HCT116MG_D190212_S1	1	590.8147583007812	2	590.816064	1179.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.405	1	16.405	15.905	16.905	0								0	0	0	0.92235	1	5518	5518		17.113	0	1		+		2757	12006	1266	1287	2760	2760					0.034951654459973724
AEVPTQLV	8	Unmodified	_AEVPTQLV_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;CPNE1|p.V501M|1|0.46|ENSG00000214078|chr20:35626354-35626354|C/T|missense_variant;ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	HCT116MG_D190212_S1	1	856.4779663085938	1	856.47746	855.470183	0.68806	0.00058931	-0.47177	-0.00040406	0.21628	0.00018524	856.4771963274591	43.134	0.31306	43.134	42.951	43.264	0					8	5	2	0	0	0	0.068362	1	16310	16310		103.75	25.599	1	22964000			2758	6429	1267	1288	2761	2761					0.036666936318511034
AEVPTQLV	8	Unmodified	_AEVPTQLV_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;CPNE1|p.V501M|1|0.46|ENSG00000214078|chr20:35626354-35626354|C/T|missense_variant;ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	HCT116MG_D190212_S2	2	856.4782104492188	1	856.47746	855.470183	0.29336	0.00025126	0.088046	7.5409E-05	0.3814	0.00032666	856.4774300356136	43.174	0.4115	43.1	42.891	43.303	-0.073372					15	7	3	0	0	0	0.079196	2	16358	16348;16358		99.799	22.551	1	44449000			2759	6429	1267	1288	2762;2763	2763					0.036666936318511034
AEVQGMQEA	9	Unmodified	_AEVQGMQEA_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MULTI-MSMS	HCT116MG_D190212_S2	2	481.71600341796875	2	481.716024	961.417496	0.46375	0.00022339	0.023528	1.1334E-05	0.48727	0.00023473	481.7158782077206	26.101	0.26052	25.74	25.557	25.818	-0.36164					9	4	3	0	0	0	0.05892	1	9440	9440		70.332	16.499	1	11735000			2760	1426	1268	1289	2764	2764					-0.06475632493265948
AEVQGMQEA	9	Unmodified	_AEVQGMQEA_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MULTI-MSMS	HCT116MG_D190212_S3	3	481.71624755859375	2	481.716024	961.417496	0.3337	0.00016075	0.1159	5.5831E-05	0.4496	0.00021658	481.7159320634035	26.009	0.41734	25.881	25.65	26.068	-0.12795					13	7	3	0	0	0	0.032914	1	9315	9315		83.429	1.8157	1	13150000			2761	1426	1268	1289	2765	2765					-0.06475632493265948
AEVQGMQEA	9	Unmodified	_AEVQGMQEA_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MULTI-MSMS	HCT116MG_D190212_S3	3	962.4255981445312	1	962.424772	961.417496	0.78396	0.0007545	-0.15614	-0.00015027	0.62782	0.00060423	962.4247114667795	26.013	0.31303	25.885	25.702	26.016	-0.12795					8	5	2	0	0	0	0.012531	1	9325	9325		107.1	21.828	1	7247000			2762	1426	1268	1289	2766	2766					-0.06475632493265948
AEVQGMQEA	9	Unmodified	_AEVQGMQEA_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MULTI-MSMS	HCT116MG_D190212_S4	4	962.4246215820312	1	962.424772	961.417496	0.53524	0.00051512	-0.46188	-0.00044452	0.07336	7.0604E-05	962.4242321600598	26.159	0.20832	25.869	25.724	25.932	-0.29023					5	3	2	0	0	0	0.082877	1	9327	9327		61.602	9.3336	1	2703400			2763	1426	1268	1289	2767	2767					-0.06475632493265948
AEVQGMQEA	9	Unmodified	_AEVQGMQEA_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	481.716024	961.417496	0.19564	9.4243E-05	-0.97146	-0.00046797	-0.77582	-0.00037373	481.71583172445713	26.158	0.31231	25.868	25.672	25.984	-0.29022	0.038057	-0.0009803	NaN	83.429	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4057200			2764	1426	1268	1289							-0.06475632493265948
AEVQGRSDG	9	Unmodified	_AEVQGRSDG_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	HCT116MG_D190212_S2	2	459.7173767089844	2	459.717413	917.420273	0.04482	2.0604E-05	0.07543	3.4676E-05	0.12025	5.5281E-05	459.71743435105304	15.727	0.20897	15.393	15.271	15.48	-0.33451					5	3	2	0	0	0	0.1754	1	5257	5257		43.858	7.8141	1	3020800			2765	1474	1269	1290	2768	2768					-0.04174041044097976
AEVQKLQAL	9	Unmodified	_AEVQKLQAL_					0	0	0		KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant;nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	500.2957458496094	2	500.295299	998.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.268	1	20.268	19.768	20.768	0								0	0	0	0.76575	1	7074	7074		15.847	1.0089	1				2766	2947	1270	1291	2769	2769					0.07670029477310436
AEVQRAQA	8	Unmodified	_AEVQRAQA_					0	0	0		JAKMIP3|p.R549W|1|0.4|ENSG00000188385|chr10:132145149-132145149|C/T|missense_variant;nc|ENSG00000188385|Q5VZ66|JAKMIP3;ENSG00000188385|ENST00000684848|JAKMIP3	JAKMIP3|p.R549W|1|0.4|ENSG00000188385|chr10:132145149-132145149|C/T|missense_variant	JAKMIP3|p.R549W|1|0.4|ENSG00000188385|chr10:132145149-132145149|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	436.7329406738281	2	436.732866	871.451179	-0.036838	-1.6088E-05	0.34433	0.00015038	0.30749	0.00013429	436.73294026852295	21.526	0.25978	21.141	21.011	21.271	-0.38503					6	4	2	0	0	0	0.40176	1	7617	7617		49.933	2.3386	1	7054900			2767	5981	1271	1292	2770	2770					0.010311570607996146
AEVRRHEVA	9	Unmodified	_AEVRRHEVA_					0	0	0		nc|ENSG00000135439|Q99490-2|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-MSMS	HCT116MG_D190212_S2	2	533.79150390625	2	533.791247	1065.56794	0.32386	0.00017287	0.054823	2.9264E-05	0.37868	0.00020214	533.7912468227587	14.694	0.2609	14.375	14.244	14.505	-0.31952					7	4	2	0	0	0	0.27446	1	4836	4836		33.445	21.805	1	2709500			2768	9468	1272	1293	2771	2771					0.037778952805638255
AEVSQEVTR	9	Unmodified	_AEVSQEVTR_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MSMS	HCT116MG_D190212_S1	1	509.76165771484375	2	509.76182	1017.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.853	1	15.853	15.353	16.353	0								0	0	0	0.55145	1	5296	5296		26.268	0.86883	1				2769	3438	1273	1294	2772	2772					0.0010337419556663008
AEVSREIAP	9	Unmodified	_AEVSREIAP_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MSMS	HCT116MG_D190212_S2	2	486.2619323730469	2	486.261456	970.50836	-0.0033316	-1.62E-06	0.57172	0.00027801	0.56839	0.00027639	486.26173447717906	38.13	0.36145	38.037	37.805	38.167	-0.09301					11	6	2	0	0	0	0.066823	1	14319	14319		66.457	7.7779	1	51988000			2770	1048	1274	1295	2773	2773					0.02192579546522211
AEVSREIAP	9	Unmodified	_AEVSREIAP_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	486.261456	970.50836	0.13802	6.7116E-05	0.67136	0.00032646	0.80938	0.00039357	486.2617922820106	38.316	0.51867	38.014	37.781	38.3	-0.30137	-0.037862	-5.3701E-05	NaN	66.457	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35706000			2771	1048	1274	1295							0.02192579546522211
AEVSREIAP	9	Unmodified	_AEVSREIAP_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	486.261456	970.50836	-0.21892	-0.00010645	1.0089	0.00049061	0.79001	0.00038415	486.2619684058288	38.487	0.36713	38.105	37.865	38.232	-0.38163	0.052737	0.0002746	NaN	66.457	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18571000			2772	1048	1274	1295							0.02192579546522211
AEVTIEAQP	9	Unmodified	_AEVTIEAQP_					0	0	0		PSG9|p.P43S|1|0.09|ENSG00000183668|chr19:43268087-43268087|G/A|missense_variant;nc|ENSG00000183668|Q00887-2|PSG9;ENSG00000183668|ENST00000270077|PSG9	PSG9|p.P43S|1|0.09|ENSG00000183668|chr19:43268087-43268087|G/A|missense_variant	PSG9|p.P43S|1|0.09|ENSG00000183668|chr19:43268087-43268087|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	479.2481689453125	2	479.248015	956.481476	0.29258	0.00014022	0.19441	9.317E-05	0.48699	0.00023339	479.24809864689144	27.731	0.67636	27.543	27.309	27.985	-0.18847					20	12	2	0	0	0	0.32162	1	10019	10019		28.487	10.352	1	6341300			2773	5732	1275	1296	2774	2774					0.001494709353323742
AEVTPVERPP	10	Unmodified	_AEVTPVERPP_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-5|ANO1	REV__nc|ENSG00000131620|Q5XXA6-5|ANO1	MSMS	HCT116MG_D190212_S1	1	547.7978515625	2	547.795663	1093.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.914	1	31.914	31.414	32.414	0								0	0	0	0.92272	1	11759	11759		10.824	0.024421	1		+		2774	17129	1276	1297	2775	2775					0.03372824126358864
AEVTSHAA	8	Unmodified	_AEVTSHAA_					0	0	0		LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	393.1930236816406	2	393.193042	784.371532	-0.0059004	-2.32E-06	0.0064657	2.5423E-06	0.00056528	2.2227E-07	393.19297147121216	16.102	0.31353	15.768	15.637	15.951	-0.33451					7	5	2	0	0	0	0.46267	1	5427	5427		44.407	12.29	1	7950600			2775	1051	1277	1298	2776	2776					-0.029279096131972437
AEVVHRYY	8	Unmodified	_AEVVHRYY_					0	0	0		ENSG00000204954|ENST00000378090|UQCC6	ENSG00000204954|ENST00000378090|UQCC6	ENSG00000204954|ENST00000378090|UQCC6	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.138916015625	2	518.764166	1035.51378	0.12864	6.6733E-05	2.149	0.0011148	2.2776	0.0011816	518.7691020279245	35.947	0.79383	35.647	35.352	36.145	-0.30041					38	17	4	0	0	0	0.31507	1	13376	13376		9.3474	5.0182	1	30008000			2776	6358	1278	1299	2777	2777					-0.002556968710223373
AEVVYHVI	8	Unmodified	_AEVVYHVI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S3	3	465.26025390625	2	465.258185	928.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.246	1	36.944	36.444	37.444	-0.30137								0	0	0	0.8837	1	13790	13790		13.508	0.97634	1		+		2777	12706	1279	1300	2778	2778					0.034706863857991266
AEWDQVTVY	9	Unmodified	_AEWDQVTVY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MSMS	HCT116MG_D190212_S4	4	555.7592163085938	2	555.758746	1109.50294	0.23402	0.00013006	-0.63008	-0.00035017	-0.39606	-0.00022011	555.7583268208339	49.57	0.24928	49.207	49.067	49.316	-0.36213					7	4	2	0	0	0	0.19461	1	18393	18393		41.84	7.4379	1	4253800			2778	786	1280	1301	2779	2779					-0.047431440359332555
AEWEERISA	9	Unmodified	_AEWEERISA_					0	0	0		nc|ENSG00000070610|Q9HCG7-3|GBA2;nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2	nc|ENSG00000070610|Q9HCG7-3|GBA2	nc|ENSG00000070610|Q9HCG7-3|GBA2	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7615356445312	2	545.76182	1089.50909	0.54588	0.00029792	0.71476	0.00039009	1.2606	0.00068801	546.2640696557966	36.668	0.25865	36.553	36.395	36.653	-0.11478					6	4	2	0	0	0	0.17903	1	13748	13748		53.317	15.141	1	14164000			2779	1239	1281	1302	2780	2780					-0.03208625804427356
AEWEERISA	9	Unmodified	_AEWEERISA_					0	0	0		nc|ENSG00000070610|Q9HCG7-3|GBA2;nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2	nc|ENSG00000070610|Q9HCG7-3|GBA2	nc|ENSG00000070610|Q9HCG7-3|GBA2	MULTI-MSMS	HCT116MG_D190212_S3	3	545.7622680664062	2	545.76182	1089.50909	0.40246	0.00021964	0.62489	0.00034104	1.0273	0.00056069	545.7620795742728	36.888	0.25967	36.587	36.405	36.665	-0.30113					6	4	2	0	0	0	0.18514	1	13672	13672		38.615	13.624	1	5320600			2780	1239	1281	1302	2781	2781					-0.03208625804427356
AEWFGDPE	8	Unmodified	_AEWFGDPE_					0	0	0			REV__ENST00000373806.1_2_9:124089055-124094878:+|nuORF	REV__ENST00000373806.1_2_9:124089055-124094878:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	476.1986999511719	2	475.698158	949.381762	0.20738	9.8651E-05	-0.80739	-0.00038407	-0.60001	-0.00028542	475.6982358713042	18.494	0.88474	18.57	18.361	19.246	0.076334					20	16	2	0	0	0	0.71077	1	6271	6271		21.747	2.3076	1	3513200	+		2781	12531	1282	1303	2782	2782					-0.09495346678613714
AEWFGDPE	8	Unmodified	_AEWFGDPE_					0	0	0			REV__ENST00000373806.1_2_9:124089055-124094878:+|nuORF	REV__ENST00000373806.1_2_9:124089055-124094878:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	476.1986999511719	2	475.698158	949.381762	0.20738	9.8651E-05	-0.80739	-0.00038407	-0.60001	-0.00028542	475.6982358713042	18.494	0.88474	18.57	18.361	19.246	0.076334					20	16	2	0	0	0	0.2797	1	6271	6271		21.747	9.506	1	3513200	+		2782	12531	1282	1303	2783	2783					-0.09495346678613714
AEWGQMDGGGA	11	Unmodified	_AEWGQMDGGGA_					0	0	0			REV__nc|ENSG00000161847|Q8IY67|RAVER1	REV__nc|ENSG00000161847|Q8IY67|RAVER1	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7168579101562	2	539.716556	1077.41856	0.33583	0.00018125	0.09207	4.9692E-05	0.4279	0.00023095	539.7165245499859	20.602	0.26023	20.636	20.506	20.766	0.034473					8	4	2	0	0	0	0.6977	1	7138	7138		22.658	4.5117	1	11502000	+		2783	17184	1283	1304	2784	2784					-0.11705418124324751
AEWGQMDGGGA	11	Unmodified	_AEWGQMDGGGA_					0	0	0			REV__nc|ENSG00000161847|Q8IY67|RAVER1	REV__nc|ENSG00000161847|Q8IY67|RAVER1	MULTI-SECPEP	HCT116MG_D190212_S3	3	540.26708984375	2	539.716556	1077.41856	0.33583	0.00018125	0.09207	4.9692E-05	0.4279	0.00023095	539.7165245499859	20.602	0.26023	20.636	20.506	20.766	0.034473					8	4	2	0	0	0	0.35879	1	7141	7141		17.443	17.443	1	11502000	+		2784	17184	1283	1304	2785	2785					-0.11705418124324751
AEWIPEERY	9	Unmodified	_AEWIPEERY_					0	0	0		ENST00000369903.6_1_1:109825347-109825730:-|nuORF;ENST00000418914.2_2_1:109825350-109825479:-|nuORF	ENST00000369903.6_1_1:109825347-109825730:-|nuORF	ENST00000369903.6_1_1:109825347-109825730:-|nuORF	MSMS	HCT116MG_D190212_S3	3	596.7836303710938	2	596.785296	1191.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.595	1	32.312	31.812	32.812	-0.28302								0	0	0	0.56943	1	11952	11952		25.399	1.6095	1				2785	7418	1284	1305	2786	2786					-0.032077662532856266
AEWLARSG	8	Unmodified	_AEWLARSG_					0	0	0		nc|ENSG00000165244|Q7RTV3-2|ZNF367	nc|ENSG00000165244|Q7RTV3-2|ZNF367	nc|ENSG00000165244|Q7RTV3-2|ZNF367	MSMS	HCT116MG_D190212_S4	4	445.22930908203125	2	445.229959	888.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.799	1	25.509	25.009	26.009	-0.29022								0	0	0	0.8837	1	9160	9160		8.5933	0	1				2786	9531	1285	1306	2787	2787					-0.0033194145086099525
AEWSKLFEA	9	Unmodified	_AEWSKLFEA_					0	0	0		ENSG00000218823|ENST00000404991|PAPOLB;PAPOLB|p.K446Sfs*28|1|0.38|ENSG00000218823|chr7:4860474-4860474|T/-|frameshift_variant;ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	HCT116MG_D190212_S2	2	540.77197265625	2	540.771657	1079.52876	0.33541	0.00018138	0.18267	9.8781E-05	0.51807	0.00028016	540.7716548384235	53.216	0.20823	53.027	52.861	53.07	-0.18922					6	3	2	0	0	0	0.048237	1	20474	20474		75.571	29.871	1	12740000			2787	6461	1286	1307	2788	2788					-0.007822497936558648
AEWVIKSKP	9	Unmodified	_AEWVIKSKP_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	HCT116MG_D190212_S2	2	529.3062744140625	2	529.305667	1056.59678	0.46421	0.00024571	0.34386	0.00018201	0.80806	0.00042771	529.3060153076891	32.719	0.20863	32.508	32.377	32.586	-0.21135					6	3	2	0	0	0	0.23993	1	12141	12141		37.075	37.075	1	25247000			2788	3945	1287	1308	2789	2789					0.0707461985698501
AEWVQRGP	8	Unmodified	_AEWVQRGP_					0	0	0		ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	ENST00000465149.1_1_2:220420747-220435459:-|nuORF	ENST00000465149.1_1_2:220420747-220435459:-|nuORF	MSMS	HCT116MG_D190212_S2	2	471.7411193847656	2	471.743234	941.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.612	1	14.292	13.792	14.792	-0.31952								0	0	0	0.79325	1	4796	4796		23.148	1.4018	1				2789	8087	1288	1309	2790	2790					-0.0011625255953049418
AEYAHLVQA	9	Unmodified	_AEYAHLVQA_					0	0	0		ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	501.2562561035156	2	501.256174	1000.49779	0.45636	0.00022875	-0.28899	-0.00014486	0.16737	8.3897E-05	501.2559827593408	33.737	0.20727	33.447	33.356	33.563	-0.29013					5	3	2	0	0	0	0.34272	1	12414	12414		26.268	26.268	1	5614700			2790	1271	1289	1310	2791	2791					-0.0024340310790194053
AEYAHLVQA	9	Unmodified	_AEYAHLVQA_					0	0	0		ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	501.256174	1000.49779	0.72543	0.00036362	-0.95006	-0.00047622	-0.22463	-0.0001126	501.25548103968174	33.58	0.15461	33.387	33.276	33.43	-0.19297	-0.050154	-0.00050376	NaN	26.268	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7878300			2791	1271	1289	1310							-0.0024340310790194053
AEYAHLVQA	9	Unmodified	_AEYAHLVQA_					0	0	0		ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	501.256174	1000.49779	0.45636	0.00022875	-0.28899	-0.00014486	0.16737	8.3897E-05	501.2559827593408	33.737	0.20727	33.447	33.356	33.563	-0.29013	0.010077	0.00015896	NaN	26.268	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5614700			2792	1271	1289	1310							-0.0024340310790194053
AEYAHLVQA	9	Unmodified	_AEYAHLVQA_					0	0	0		ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	501.256174	1000.49779	0.52875	0.00026504	-0.4069	-0.00020396	0.12185	6.108E-05	501.25593336872527	33.861	0.15553	33.477	33.362	33.517	-0.38426	0.040077	4.0756E-05	NaN	26.268	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2631700			2793	1271	1289	1310							-0.0024340310790194053
AEYDANFG	8	Unmodified	_AEYDANFG_					0	0	0			REV__FOS|p.R146Gfs*16|1|0.3|ENSG00000170345|chr14:75280600-75280600|A/-|frameshift_variant	REV__FOS|p.R146Gfs*16|1|0.3|ENSG00000170345|chr14:75280600-75280600|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	886.3598022460938	1	886.357738	885.350462	0.80648	0.00071483	0.52174	0.00046245	1.3282	0.0011773	886.3583688591882	21.944	0.2598	21.723	21.579	21.838	-0.22102					6	4	2	0	0	0	0.73234	1	7632	7632		19.257	7.6167	1	1704700	+		2794	13293	1290	1311	2792	2792					-0.09679919712709761
AEYDLMVKA	9	Unmodified	_AEYDLMVKA_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	520.2603759765625	2	520.260068	1038.50558	0.3024	0.00015732	0.92904	0.00048334	1.2314	0.00064067	520.2602791220957	41.055	0.18721	41.055	40.946	41.133	0					8	3	3	0	0	0	0.032914	1	15456	15456		83.429	58.029	1	24465000			2795	1439	1291	1312	2793	2793					-0.012130119026551256
AEYDLMVKA	9	Unmodified	_AEYDLMVKA_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	520.2599487304688	2	520.260068	1038.50558	0.2547	0.00013251	0.32617	0.00016969	0.58088	0.00030221	520.2601095512051	41.045	0.31076	40.976	40.777	41.088	-0.069145					14	5	4	0	0	0	0.0068427	1	15494	15494		121.53	83.56	1	133430000			2796	1439	1291	1312	2794	2794					-0.012130119026551256
AEYDLMVKA	9	Unmodified	_AEYDLMVKA_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1039.512451171875	1	1039.51286	1038.50558	0.65119	0.00067692	-0.45991	-0.00047809	0.19128	0.00019884	1039.5119822800527	41.061	0.15491	40.992	40.882	41.037	-0.068707					4	2	2	0	0	0	0.0068427	1	15520	15520		121.53	75.513	1	15326000			2797	1439	1291	1312	2795	2795					-0.012130119026551256
AEYDLMVKA	9	Unmodified	_AEYDLMVKA_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2600708007812	2	520.260068	1038.50558	0.23255	0.00012099	-0.26564	-0.0001382	-0.033082	-1.7211E-05	520.2598696203073	41.325	0.20881	41.023	40.84	41.049	-0.30185					6	3	2	0	0	0	0.014023	1	15361	15361		103.42	65.445	1	21630000			2798	1439	1291	1312	2796	2796					-0.012130119026551256
AEYDLTTRIA	10	Unmodified	_AEYDLTTRIA_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S2	2	1152.590087890625	1	1152.58953	1151.58225	0.48383	0.00055766	0.79773	0.00091946	1.2816	0.0014771	1152.590982521226	38.901	0.25859	38.816	38.702	38.961	-0.084618					7	4	2	0	0	0	0.011898	1	14635	14635		139.38	39.623	1	16035000			2799	1931	1292	1313	2797	2797					0.012525029181688296
AEYDLTTRIA	10	Unmodified	_AEYDLTTRIA_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S3	3	576.7987060546875	2	576.798403	1151.58225	0.44723	0.00025796	0.37007	0.00021346	0.8173	0.00047142	576.7986387069333	39.162	0.47527	38.861	38.664	39.14	-0.30137					25	8	4	0	0	0	0.019431	1	14528	14528		121.5	71.949	1	67747000			2800	1931	1292	1313	2798	2798					0.012525029181688296
AEYDLTTRIA	10	Unmodified	_AEYDLTTRIA_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;EIF3E|p.L14Wfs*5|1|0.23|ENSG00000104408|chr8:108248662-108248662|A/-|frameshift_variant	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MSMS	HCT116MG_D190212_S4	4	576.799072265625	2	576.798403	1151.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.248	1	38.867	38.367	39.367	-0.38055								0	0	0	0.26824	1	14414	14414		62.869	33.787	1				2801	1931	1292	1313	2799	2799					0.012525029181688296
AEYDNFFQHL	10	Unmodified	_AEYDNFFQHL_					0	0	0		ENST00000491646.1_1_2:122217554-122217677:-|nuORF;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	ENST00000491646.1_1_2:122217554-122217677:-|nuORF	ENST00000491646.1_1_2:122217554-122217677:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	642.2886352539062	2	642.288202	1282.56185	0.56971	0.00036592	0.062121	3.99E-05	0.63183	0.00040582	642.2881790286272	55.232	0.15231	55.044	54.968	55.121	-0.18797					4	2	2	0	0	0	0.13861	1	21310	21310		66.457	48.31	1	65717000			2802	1294	1293	1314	2800	2800					-0.06812667741610312
AEYDRPNLLP	10	Unmodified	_AEYDRPNLLP_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	HCT116MG_D190212_S2	2	594.3062744140625	2	594.306395	1186.59824	0.96778	0.00057516	-0.3995	-0.00023743	0.56828	0.00033773	594.3057238851975	43.652	0.35981	43.575	43.403	43.762	-0.077641					15	6	3	0	0	0	0.37453	1	16545	16545		43.982	15.495	1	32874000			2803	836	1294	1315	2801	2801					0.012402091550939076
AEYEAMAAI	9	Unmodified	_AEYEAMAAI_					0	0	0		ENSG00000198909|ENST00000361733|MAP3K3;nc|ENSG00000198909|Q99759-2|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	MULTI-MSMS	HCT116MG_D190212_S3	3	968.4410400390625	1	968.43936	967.432083	0.6509	0.00063036	-0.38036	-0.00036835	0.27054	0.000262	968.4389703044858	41.12	0.31362	40.818	40.632	40.945	-0.30185					11	5	3	0	0	0	0.065014	1	15290	15290		67.344	3.1075	1	8923100			2804	6296	1295	1316	2802	2802					-0.05293560345114656
AEYEAMAAI	9	Unmodified	_AEYEAMAAI_					0	0	0		ENSG00000198909|ENST00000361733|MAP3K3;nc|ENSG00000198909|Q99759-2|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	MULTI-MSMS	HCT116MG_D190212_S4	4	968.4408569335938	1	968.43936	967.432083	0.59494	0.00057616	0.82902	0.00080286	1.424	0.001379	968.4401838184735	41.199	0.22017	40.822	40.676	40.896	-0.37732					6	4	2	0	0	0	0.1037	1	15147	15147		57.471	0	1	5938200			2805	6296	1295	1316	2803	2803					-0.05293560345114656
AEYEAMAAI	9	Unmodified	_AEYEAMAAI_					0	0	0		ENSG00000198909|ENST00000361733|MAP3K3;nc|ENSG00000198909|Q99759-2|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	ENSG00000198909|ENST00000361733|MAP3K3	MULTI-MATCH	HCT116MG_D190212_S2	2		1	968.43936	967.432083	0.71372	0.00069119	0.48307	0.00046782	1.1968	0.001159	968.4400085850945	40.924	0.156	40.855	40.725	40.881	-0.069626	0.02335	1.5286E-05	NaN	67.344	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14031000			2806	6296	1295	1316							-0.05293560345114656
AEYEFDSP	8	Unmodified	_AEYEFDSP_					0	0	0		ENST00000397277.6_1_3:9799496-9807558:-|nuORF;nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000134072|ENST00000256460|CAMK1;ENSG00000183049|ENST00000619168|CAMK1D	ENST00000397277.6_1_3:9799496-9807558:-|nuORF	ENST00000397277.6_1_3:9799496-9807558:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	479.1950378417969	2	479.195448	956.376342	0.16149	7.7386E-05	-0.42867	-0.00020542	-0.26718	-0.00012803	479.19522062366957	19.959	0.25849	19.584	19.455	19.713	-0.37503					6	4	2	0	0	0	0.66848	1	6990	6990		26.341	1.6674	1	5729800			2807	3263	1296	1317	2804	2804					-0.1035907026108589
AEYENLTNKL	10	Unmodified	_AEYENLTNKL_					0	0	0		nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;ENSG00000100503|ENST00000530997|NIN;NIN|p.E895Cfs*10|1|0.26|ENSG00000100503|chr14:50758344-50758347|TCTC/-|frameshift_variant;NIN|p.K1233Rfs*3|1|0.45|ENSG00000100503|chr14:50757332-50757332|T/-|frameshift_variant;NIN|p.N1391Kfs*8|1|0.03|ENSG00000100503|chr14:50756857-50756858|-/AGGAAAACAC|frameshift_variant	nc|ENSG00000100503|Q8N4C6-6|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	MSMS	HCT116MG_D190212_S2	2	597.9736328125	2	597.803685	1193.59282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.325	1	39.247	38.747	39.747	-0.077835								0	0	0	0.20883	1	14797	14797		67.838	32.906	1				2808	1714	1297	1318	2805	2805					0.003764855726103633
AEYGEIKNI	9	Unmodified	_AEYGEIKNI_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-MSMS	HCT116MG_D190212_S1	1	518.7692260742188	2	518.769114	1035.52368	0.52509	0.0002724	-0.29899	-0.00015511	0.2261	0.0001173	518.7688911641287	35.759	0.15552	35.759	35.682	35.837	0					4	2	2	0	0	0	0.01386	1	13335	13335		103.82	34.719	1	20089000			2809	6645	1298	1319	2806	2806					0.007334463437246086
AEYGEIKNI	9	Unmodified	_AEYGEIKNI_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-MSMS	HCT116MG_D190212_S2	2	518.769287109375	2	518.769114	1035.52368	0.60602	0.00031438	-0.043478	-2.2555E-05	0.56254	0.00029183	518.7689098835215	35.811	0.36003	35.669	35.489	35.849	-0.14245					13	6	3	0	0	0	0.0064416	1	13375	13375		125.04	54.706	1	115110000			2810	6645	1298	1319	2807	2807					0.007334463437246086
AEYGHFVDI	9	Unmodified	_AEYGHFVDI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	HCT116MG_D190212_S1	1	525.7484130859375	2	525.748182	1049.48181	0.46607	0.00024503	-0.058528	-3.0771E-05	0.40754	0.00021426	525.7481117004965	45.9	0.31409	45.9	45.713	46.027	0					13	5	3	0	0	0	0.0060607	1	17401	17401		128.37	61.022	1	77328000			2811	1138	1299	1320	2808	2808					-0.040951093448029496
AEYGHFVDI	9	Unmodified	_AEYGHFVDI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	HCT116MG_D190212_S1	1	1050.49072265625	1	1050.48909	1049.48181	0.93006	0.00097702	0.4741	0.00049804	1.4042	0.0014751	1050.489739063646	45.896	0.20923	45.896	45.765	45.975	0					5	3	2	0	0	0	0.049545	1	17427	17427		74.929	42.143	1	9074300			2812	1138	1299	1320	2809	2809					-0.040951093448029496
AEYGHFVDI	9	Unmodified	_AEYGHFVDI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	HCT116MG_D190212_S2	2	525.7484130859375	2	525.748182	1049.48181	0.4151	0.00021824	-0.18437	-9.6931E-05	0.23073	0.00012131	525.748011992555	45.888	0.51315	45.787	45.607	46.12	-0.1014					25	9	4	0	0	0	0.0060607	1	17444	17444		128.37	59.26	1	884900000			2813	1138	1299	1320	2810	2810					-0.040951093448029496
AEYGHFVDI	9	Unmodified	_AEYGHFVDI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	HCT116MG_D190212_S2	2	1050.48876953125	1	1050.48909	1049.48181	0.67818	0.00071242	-0.16088	-0.000169	0.51731	0.00054343	1050.4889156750016	45.888	0.30829	45.787	45.658	45.966	-0.1014					11	5	3	0	0	0	0.0090481	1	17465	17465		115.69	64.062	1	69161000			2814	1138	1299	1320	2811	2811					-0.040951093448029496
AEYGHFVDI	9	Unmodified	_AEYGHFVDI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	HCT116MG_D190212_S3	3	525.74853515625	2	525.748182	1049.48181	0.61218	0.00032185	-0.15994	-8.409E-05	0.45224	0.00023776	525.7480113067024	46.166	0.5119	45.854	45.667	46.179	-0.31237					44	15	4	0	0	0	0.0060607	1	17280	17280		128.37	61.022	1	203290000			2815	1138	1299	1320	2812	2812					-0.040951093448029496
AEYGHFVDI	9	Unmodified	_AEYGHFVDI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	HCT116MG_D190212_S4	4	525.748291015625	2	525.748182	1049.48181	0.48971	0.00025746	-0.064593	-3.396E-05	0.42511	0.0002235	525.7480635506577	46.218	0.30044	45.846	45.698	45.998	-0.37206					60	23	3	0	0	0	0.0054498	2	17037	17034;17037		133.7	66.358	1	72292000			2816	1138	1299	1320	2813;2814	2814					-0.040951093448029496
AEYGYIRTV	9	Unmodified	_AEYGYIRTV_					0	0	0		PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant;ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2	PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant	PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2771606445312	2	536.277106	1070.53966	0.52378	0.00028089	-0.25114	-0.00013468	0.27264	0.00014621	536.2767520453195	38.141	0.29802	37.84	37.691	37.989	-0.30137					10	5	3	0	0	0	0.41788	1	14136	14136		21.59	2.3332	1	7909900			2817	1091	1300	1321	2815	2815					0.007211525806042118
AEYGYIRTV	9	Unmodified	_AEYGYIRTV_					0	0	0		PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant;ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2	PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant	PKP2|p.K456Nfs*3|1|0.41|ENSG00000057294|chr12:32850776-32850776|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	536.277099609375	2	536.277106	1070.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.284	1	37.901	37.401	38.401	-0.38283								0	0	0	0.71477	1	14025	14025		18.373	6.7328	1				2818	1091	1300	1321	2816	2816					0.007211525806042118
AEYHAVVTC	9	Unmodified	_AEYHAVVTC_					0	0	0		ENSG00000215012|ENST00000328554|RTL10	ENSG00000215012|ENST00000328554|RTL10	ENSG00000215012|ENST00000328554|RTL10	MULTI-SECPEP	HCT116MG_D190212_S2	2	496.24053955078125	2	496.728935	991.443317	0.34097	0.00016937	-0.39663	-0.00019702	-0.055658	-2.7647E-05	496.72905190753767	31.04	0.20767	30.773	30.612	30.819	-0.26704					5	3	2	0	0	0	0.2025	1	11430	11430		19.257	0	1	6246400			2819	6443	1301	1322	2817	2817					-0.052747382509892304
AEYHQSILA	9	Unmodified	_AEYHQSILA_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	515.7747802734375	2	516.261456	1030.50836	0.42006	0.00021686	0.37374	0.00019295	0.7938	0.00040981	516.2616819777986	33.685	0.31136	33.685	33.504	33.815	0					11	5	3	0	0	0	0.21474	1	12472	12472		29.082	0	1	8194900			2820	5119	1302	1323	2818	2818					-0.005674204534670935
AEYHQSILA	9	Unmodified	_AEYHQSILA_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2616577148438	2	516.261456	1030.50836	0.20682	0.00010677	0.22985	0.00011866	0.43666	0.00022543	516.261344032816	33.961	0.25939	33.786	33.657	33.916	-0.17512					9	4	3	0	0	0	0.24534	1	12626	12626		36.506	7.4246	1	34234000			2821	5119	1302	1323	2819	2819					-0.005674204534670935
AEYHQSILA	9	Unmodified	_AEYHQSILA_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	516.2615356445312	2	516.261456	1030.50836	0.26906	0.00013891	0.49501	0.00025555	0.76407	0.00039446	516.261385535959	34.107	0.26048	33.813	33.663	33.923	-0.2942					8	4	2	0	0	0	0.34272	1	12559	12559		26.268	3.5319	1	7963200			2822	5119	1302	1323	2820	2820					-0.005674204534670935
AEYINEAAA	9	Unmodified	_AEYINEAAA_					0	0	0		nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	MULTI-MSMS	HCT116MG_D190212_S2	2	951.4417114257812	1	951.441802	950.434526	0.45583	0.0004337	0.28001	0.00026641	0.73584	0.00070011	951.441627400628	30.645	0.36084	30.378	30.199	30.56	-0.26704					13	6	3	0	0	0	0.023938	1	11282	11282		92.491	17.562	1	76191000			2823	4110	1303	1324	2821	2821					-0.04267388615812706
AEYINEAAA	9	Unmodified	_AEYINEAAA_					0	0	0		nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	MULTI-MSMS	HCT116MG_D190212_S2	2	476.2245788574219	2	476.224539	950.434526	0.052218	2.4868E-05	0.06034	2.8735E-05	0.11256	5.3603E-05	476.2245223641653	30.645	0.36114	30.378	30.251	30.612	-0.26704					12	6	2	0	0	0	0.040027	1	11301	11301		79.596	7.674	1	40595000			2824	4110	1303	1324	2822	2822					-0.04267388615812706
AEYINEAAA	9	Unmodified	_AEYINEAAA_					0	0	0		nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	MULTI-MSMS	HCT116MG_D190212_S3	3	951.4420166015625	1	951.441802	950.434526	0.72978	0.00069435	-0.20582	-0.00019582	0.52397	0.00049852	951.4414998600574	30.787	0.45508	30.526	30.358	30.813	-0.26071					19	8	3	0	0	0	0.023938	1	11211	11211		92.491	7.2194	1	49758000			2825	4110	1303	1324	2823	2823					-0.04267388615812706
AEYINEAAA	9	Unmodified	_AEYINEAAA_					0	0	0		nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	MULTI-MSMS	HCT116MG_D190212_S3	3	476.22430419921875	2	476.224539	950.434526	0.12981	6.1817E-05	0.14514	6.9119E-05	0.27494	0.00013094	476.2245505331617	30.787	0.55973	30.526	30.358	30.917	-0.26071					21	10	3	0	0	0	0.063511	1	11214	11214		68.081	0	1	16030000			2826	4110	1303	1324	2824	2824					-0.04267388615812706
AEYINEAAA	9	Unmodified	_AEYINEAAA_					0	0	0		nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	MULTI-MSMS	HCT116MG_D190212_S4	4	951.4418334960938	1	951.441802	950.434526	0.50124	0.0004769	0.058589	5.5744E-05	0.55983	0.00053264	951.4415686065629	30.838	0.4315	30.474	30.339	30.771	-0.36416					16	8	3	0	0	0	0.01389	1	11160	11160		103.75	7.4635	1	11661000			2827	4110	1303	1324	2825	2825					-0.04267388615812706
AEYINEAAA	9	Unmodified	_AEYINEAAA_					0	0	0		nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	nc|ENSG00000151353|Q96B42-2|TMEM18	MULTI-MSMS	HCT116MG_D190212_S4	4	476.22442626953125	2	476.224539	950.434526	0.45138	0.00021496	-0.20595	-9.8079E-05	0.24543	0.00011688	476.2243410526312	30.911	0.45054	30.547	30.371	30.822	-0.36416					14	8	2	0	0	0	0.12994	1	11182	11182		52.268	2.3353	1	7312000			2828	4110	1303	1324	2826	2826					-0.04267388615812706
AEYLGANSV	9	Unmodified	_AEYLGANSV_					0	0	0		ENST00000496669.1_1_3:87100344-87100812:-|nuORF;ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	923.447998046875	1	923.446888	922.439611	0.96807	0.00089396	0.76585	0.00070723	1.7339	0.0016012	923.4472828693645	36.648	0.25865	36.533	36.395	36.653	-0.11478					6	4	2	0	0	0	0.0034365	1	13739	13739		160.52	49.229	1	10625000			2829	2989	1304	1325	2827	2827					-0.024710847531878244
AEYLGANSVV	10	Unmodified	_AEYLGANSVV_					0	0	0		ENST00000496669.1_1_3:87100344-87100812:-|nuORF;ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1022.5160522460938	1	1022.5153	1021.50803	0.70489	0.00072076	0.53541	0.00054747	1.2403	0.0012682	1022.516102097457	42.369	0.41465	42.299	42.119	42.533	-0.069984					10	7	2	0	0	0	0.052106	1	16041	16041		85.642	41.783	1	39981000			2830	2989	1305	1326	2828	2828					-0.0018684017333043812
AEYLGANSVV	10	Unmodified	_AEYLGANSVV_					0	0	0		ENST00000496669.1_1_3:87100344-87100812:-|nuORF;ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	511.7612609863281	2	511.761289	1021.50803	0.28847	0.00014763	0.11904	6.0919E-05	0.40751	0.00020855	511.76132500783064	42.374	0.25928	42.304	42.17	42.429	-0.069984					9	4	3	0	0	0	0.11091	1	16044	16044		71.922	39.617	1	26678000			2831	2989	1305	1326	2829	2829					-0.0018684017333043812
AEYLGANSVV	10	Unmodified	_AEYLGANSVV_					0	0	0		ENST00000496669.1_1_3:87100344-87100812:-|nuORF;ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1022.51611328125	1	1022.5153	1021.50803	0.6901	0.00070564	0.22694	0.00023204	0.91704	0.00093769	1022.5155838912527	42.625	0.36496	42.321	42.092	42.457	-0.30352					12	6	3	0	0	0	0.052106	1	15875	15875		85.642	41.783	1	12579000			2832	2989	1305	1326	2830	2830					-0.0018684017333043812
AEYLGANSVV	10	Unmodified	_AEYLGANSVV_					0	0	0		ENST00000496669.1_1_3:87100344-87100812:-|nuORF;ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	511.761474609375	2	511.761289	1021.50803	0.24781	0.00012682	0.16987	8.6934E-05	0.41769	0.00021376	511.76135337146417	42.578	0.36496	42.275	42.092	42.457	-0.30352					12	6	3	0	0	0	0.11091	1	15890	15890		71.922	31.965	1	17123000			2833	2989	1305	1326	2831	2831					-0.0018684017333043812
AEYLGANSVV	10	Unmodified	_AEYLGANSVV_					0	0	0		ENST00000496669.1_1_3:87100344-87100812:-|nuORF;ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	511.7618408203125	2	511.761289	1021.50803	0.2127	0.00010885	0.28098	0.00014379	0.49368	0.00025264	511.7613975574131	42.655	0.20602	42.28	42.151	42.357	-0.37493					6	3	2	0	0	0	0.16489	1	15694	15694		62.573	30.267	1	5080300			2834	2989	1305	1326	2832	2832					-0.0018684017333043812
AEYLGANSVV	10	Unmodified	_AEYLGANSVV_					0	0	0		ENST00000496669.1_1_3:87100344-87100812:-|nuORF;ENST00000425339.2_1_4:57261520-57265668:-|nuORF;ENSG00000128059|ENST00000264220|PPAT	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1022.5164184570312	1	1022.5153	1021.50803	0.60526	0.00061889	-0.090374	-9.2408E-05	0.51489	0.00052648	1022.5153226636692	42.655	0.25779	42.28	42.099	42.357	-0.37493					7	4	2	0	0	0	0.16489	1	15704	15704		62.573	37.173	1	4195800			2835	2989	1305	1326	2833	2833					-0.0018684017333043812
AEYLIKEGY	9	Unmodified	_AEYLIKEGY_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	HCT116MG_D190212_S1	1	543.2787475585938	2	543.279315	1084.54408	-0.32995	-0.00017926	-0.50455	-0.00027411	-0.8345	-0.00045337	543.2791339450856	38.306	0.2084	38.306	38.175	38.384	0					6	3	2	0	0	0	0.35128	1	14363	14363		25.399	10.561	1	12237000			2836	1452	1306	1327	2834	2834					0.005186170035358373
AEYLIKEGY	9	Unmodified	_AEYLIKEGY_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	HCT116MG_D190212_S2	2	543.2787475585938	2	543.279315	1084.54408	0.40203	0.00021841	-1.0767	-0.00058494	-0.67466	-0.00036653	543.2784636914978	38.338	0.31343	38.245	38.115	38.428	-0.09301					11	5	3	0	0	0	0.21251	1	14422	14422		39.957	19.504	1	40768000			2837	1452	1306	1327	2835	2835					0.005186170035358373
AEYLIKEGY	9	Unmodified	_AEYLIKEGY_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	HCT116MG_D190212_S3	3	543.2785034179688	2	543.279315	1084.54408	0.33658	0.00018285	0.25559	0.00013886	0.59217	0.00032171	543.2793350915978	38.575	0.20793	38.274	38.144	38.352	-0.30137					8	3	3	0	0	0	0.13316	1	14312	14312		51.63	20.361	1	7298900			2838	1452	1306	1327	2836	2836					0.005186170035358373
AEYLKLANN	9	Unmodified	_AEYLKLANN_					0	0	0		TMCC1|p.S268N|1|0.28|ENSG00000172765|chr3:129671038-129671038|C/T|missense_variant;nc|ENSG00000133069|O75069-3|TMCC2;nc|ENSG00000133069|O75069-5|TMCC2;nc|ENSG00000133069|O75069-2|TMCC2;ENSG00000133069|ENST00000358024|TMCC2	TMCC1|p.S268N|1|0.28|ENSG00000172765|chr3:129671038-129671038|C/T|missense_variant	TMCC1|p.S268N|1|0.28|ENSG00000172765|chr3:129671038-129671038|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	518.77880859375	2	518.277106	1034.53966	0.20183	0.0001046	-0.73064	-0.00037867	-0.52881	-0.00027407	518.2765612391829	25.53	0.2614	25.161	24.978	25.239	-0.36914					7	4	2	0	0	0	0.32978	1	9217	9217		27.629	0.74515	1	16233000			2839	3224	1307	1328	2837	2837					0.023771525806068894
AEYLQPKAA	9	Unmodified	_AEYLQPKAA_					0	0	0		TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF	TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant	TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	495.7666320800781	2	495.766374	989.518196	0.43412	0.00021522	0.46069	0.00022839	0.8948	0.00044361	495.76655969199004	27.092	0.26486	26.739	26.606	26.871	-0.35254					7	4	2	0	0	0	0.22946	1	9867	9867		38.176	5.8701	1	7907800			2840	1222	1308	1329	2838	2838					0.023017675518985925
AEYLQPKAA	9	Unmodified	_AEYLQPKAA_					0	0	0		TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF	TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant	TGFBR3|p.K277Sfs*6|1|0.3|ENSG00000069702|chr1:91727714-91727714|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	495.76690673828125	2	495.766374	989.518196	0.33332	0.00016525	-0.26951	-0.00013361	0.063804	3.1632E-05	495.76628656039475	26.987	0.31266	26.817	26.599	26.912	-0.16933					8	5	2	0	0	0	0.16285	1	9723	9723		45.74	20.341	1	3649300			2841	1222	1308	1329	2839	2839					0.023017675518985925
AEYLSANVV	9	Unmodified	_AEYLSANVV_					0	0	0		nc|ENSG00000172167|Q96DY7-3|MTBP;MTBP|p.F354Lfs*11|1|0.23|ENSG00000172167|chr8:120470830-120470830|T/-|frameshift_variant;MTBP|p.K383Sfs*12|1|0.11|ENSG00000172167|chr8:120470916-120470916|A/-|frameshift_variant;ENSG00000172167|ENST00000305949|MTBP	nc|ENSG00000172167|Q96DY7-3|MTBP	nc|ENSG00000172167|Q96DY7-3|MTBP	MULTI-MSMS	HCT116MG_D190212_S2	2	965.4942626953125	1	965.493838	964.486562	0.59942	0.00057874	-0.38973	-0.00037629	0.20969	0.00020245	965.4931568635179	43.468	0.15532	43.395	43.303	43.458	-0.073372					4	2	2	0	0	0	0.055677	1	16505	16505		71.922	25.901	1	16556000			2842	5238	1309	1330	2840	2840					0.002897747979545784
AEYMKKDSA	9	Unmodified	_AEYMKKDSA_					0	0	0		ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;RAVER1|p.P366Qfs*169|1|0.32|ENSG00000161847|chr19:10322721-10322721|G/-|frameshift_variant;RAVER1|p.K358Sfs*177|2|0.26|ENSG00000161847|chr19:10323152-10323152|C/-|frameshift_variant;nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;RAVER1|p.G303Afs*232|1|0.29|ENSG00000161847|chr19:10323417-10323417|G/-|frameshift_variant	ENSG00000161847|ENST00000617231|RAVER1	ENSG00000161847|ENST00000617231|RAVER1	MULTI-MSMS	HCT116MG_D190212_S1	1	521.7468872070312	2	521.747324	1041.4801	0.39043	0.0002037	-0.32148	-0.00016773	0.06895	3.5974E-05	521.7471460271646	16.603	0.26021	16.603	16.473	16.733	0					10	4	3	0	0	0	0.022505	1	5606	5606		93.938	53.988	1	11146000			2843	4499	1310	1331	2841	2841					-0.038984864250551254
AEYMKKDSA	9	Unmodified	_AEYMKKDSA_					0	0	0		ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;RAVER1|p.P366Qfs*169|1|0.32|ENSG00000161847|chr19:10322721-10322721|G/-|frameshift_variant;RAVER1|p.K358Sfs*177|2|0.26|ENSG00000161847|chr19:10323152-10323152|C/-|frameshift_variant;nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;RAVER1|p.G303Afs*232|1|0.29|ENSG00000161847|chr19:10323417-10323417|G/-|frameshift_variant	ENSG00000161847|ENST00000617231|RAVER1	ENSG00000161847|ENST00000617231|RAVER1	MULTI-MSMS	HCT116MG_D190212_S2	2	521.7474365234375	2	521.747324	1041.4801	0.36758	0.00019178	0.018973	9.899E-06	0.38655	0.00020168	521.7472585799915	17.092	0.62629	16.742	16.613	17.239	-0.34933					20	11	4	0	0	0	0.018739	1	5799	5799		97.741	57.791	1	56443000			2844	4499	1310	1331	2842	2842					-0.038984864250551254
AEYNGRLAA	9	Unmodified	_AEYNGRLAA_					0	0	0		ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	MULTI-MSMS	HCT116MG_D190212_S1	1	483.2484436035156	2	482.745973	963.477394	0.329	0.00015882	-0.062573	-3.0207E-05	0.26643	0.00012862	482.7456734752094	26.14	0.31309	26.14	25.98	26.293	0					7	5	2	0	0	0	0.090581	1	9450	9450		60.074	27.768	1	4797000			2845	1788	1311	1332	2843	2843					-0.005805737677064826
AEYNGRLAA	9	Unmodified	_AEYNGRLAA_					0	0	0		ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7460021972656	2	482.745973	963.477394	0.10193	4.9204E-05	0.033226	1.604E-05	0.13515	6.5243E-05	482.7459529576494	26.515	0.41476	26.154	25.972	26.387	-0.36164					12	7	2	0	0	0	0.034046	1	9619	9619		82.529	48.128	1	48270000			2846	1788	1311	1332	2844	2844					-0.005805737677064826
AEYNGRLAA	9	Unmodified	_AEYNGRLAA_					0	0	0		ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	ENSG00000101413|ENST00000373433|RPRD1B	MULTI-MSMS	HCT116MG_D190212_S3	3	482.74609375	2	482.745973	963.477394	0.31629	0.00015269	-0.18206	-8.7887E-05	0.13424	6.4802E-05	482.74589114427926	26.326	0.36473	26.177	25.994	26.359	-0.14924					11	6	2	0	0	0	0.034046	1	9443	9443		82.529	46.402	1	22008000			2847	1788	1311	1332	2845	2845					-0.005805737677064826
AEYNKGGF	8	Unmodified	_AEYNKGGF_					0	0	0			REV__INPP5A|p.N116Tfs*25|3|0.35|ENSG00000068383|chr10:132690427-132690427|A/-|frameshift_variant	REV__INPP5A|p.N116Tfs*25|3|0.35|ENSG00000068383|chr10:132690427-132690427|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	443.2084045410156	2	443.208692	884.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.422	1	34.247	33.747	34.747	-0.17512								0	0	0	0.70483	1	12806	12806		30.225	1.738	1		+		2848	10737	1312	1333	2846	2846					-0.04399336579081137
AEYPAVKF	8	Unmodified	_AEYPAVKF_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-MSMS	HCT116MG_D190212_S1	1	462.7452392578125	2	462.744911	923.475269	0.082589	3.8218E-05	0.037778	1.7482E-05	0.12037	5.5699E-05	462.74503044697906	42.106	0.52098	42.106	41.862	42.383	0					16	9	2	0	0	0	0.27593	1	15876	15876		61.357	38.209	1	8963200			2849	3450	1313	1334	2847	2847					0.010469974944726346
AEYPAVKF	8	Unmodified	_AEYPAVKF_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-MSMS	HCT116MG_D190212_S2	2	462.74530029296875	2	462.744911	923.475269	0.18794	8.697E-05	0.12613	5.8367E-05	0.31407	0.00014534	462.7448577467848	42.125	0.67393	42.057	41.601	42.274	-0.068199					31	12	3	0	0	0	0.064348	1	15864	15864		108	63.59	1	61247000			2850	3450	1313	1334	2848	2848					0.010469974944726346
AEYPAVKF	8	Unmodified	_AEYPAVKF_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-MSMS	HCT116MG_D190212_S3	3	462.7451171875	2	462.744911	923.475269	0.44113	0.00020413	-0.23006	-0.00010646	0.21107	9.7672E-05	462.7446896220509	42.422	0.57303	42.118	41.728	42.301	-0.30352					19	10	2	0	0	0	0.37603	1	15755	15755		52.268	16.224	1	8278400			2851	3450	1313	1334	2849	2849					0.010469974944726346
AEYPGSSA	8	Unmodified	_AEYPGSSA_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.H353Pfs*16|1|0.31|ENSG00000119285|chr1:236595572-236595573|-/G|frameshift_variant;HEATR1|p.M758Dfs*47|1|0.08|ENSG00000119285|chr1:236583167-236583168|-/G|frameshift_variant	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	HCT116MG_D190212_S1	1	781.3367919921875	1	781.336275	780.328998	0.83921	0.00065571	0.096355	7.5285E-05	0.93557	0.00073099	781.3362556510788	22.391	0.31315	22.391	22.22	22.533	0					10	5	3	0	0	0	0.036086	1	7932	7932		139.54	61.56	1	13853000			2852	2629	1314	1335	2850	2850					-0.06995304741417385
AEYPGSSA	8	Unmodified	_AEYPGSSA_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.H353Pfs*16|1|0.31|ENSG00000119285|chr1:236595572-236595573|-/G|frameshift_variant;HEATR1|p.M758Dfs*47|1|0.08|ENSG00000119285|chr1:236583167-236583168|-/G|frameshift_variant	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	HCT116MG_D190212_S2	2	781.3368530273438	1	781.336275	780.328998	0.98606	0.00077045	-0.17257	-0.00013484	0.81349	0.00063561	781.3361535858311	22.669	0.41536	22.284	22.103	22.518	-0.3852					14	7	3	0	0	0	0.036086	1	8045	8045		139.54	65.121	1	81876000			2853	2629	1314	1335	2851	2851					-0.06995304741417385
AEYPGSSA	8	Unmodified	_AEYPGSSA_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.H353Pfs*16|1|0.31|ENSG00000119285|chr1:236595572-236595573|-/G|frameshift_variant;HEATR1|p.M758Dfs*47|1|0.08|ENSG00000119285|chr1:236583167-236583168|-/G|frameshift_variant	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	HCT116MG_D190212_S3	3	781.33642578125	1	781.336275	780.328998	0.61927	0.00048386	0.28238	0.00022063	0.90165	0.00070449	781.33636073853	22.397	0.41684	22.391	22.244	22.661	-0.0056477					14	7	3	0	0	0	0.036086	1	7860	7860		139.54	61.56	1	16220000			2854	2629	1314	1335	2852	2852					-0.06995304741417385
AEYQRNIVS	9	Unmodified	_AEYQRNIVS_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;ENST00000491694.1_1_3:111658417-111664240:+|nuORF	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	540.2777099609375	2	540.277638	1078.54072	0.36528	0.00019735	0.11543	6.2363E-05	0.48071	0.00025972	540.2776841663965	25.342	0.2602	25.342	25.197	25.457	0					8	4	2	0	0	0	0.19011	1	9131	9131		42.312	20.776	1	9632900			2855	3888	1315	1336	2853	2853					0.004593669495079666
AEYQRNIVS	9	Unmodified	_AEYQRNIVS_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;ENST00000491694.1_1_3:111658417-111664240:+|nuORF	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	540.2560424804688	2	540.277638	1078.54072	0.56616	0.00030588	-0.054995	-2.9713E-05	0.51116	0.00027617	540.277543706223	25.492	0.36398	25.386	25.256	25.62	-0.10618					12	6	3	0	0	0	0.14416	1	9120	9120		55.235	28.967	1	13256000			2856	3888	1315	1336	2854	2854					0.004593669495079666
AEYQRNIVS	9	Unmodified	_AEYQRNIVS_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;ENST00000491694.1_1_3:111658417-111664240:+|nuORF	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	540.277638	1078.54072	0.44353	0.00023963	0.089483	4.8346E-05	0.53301	0.00028798	540.2776074003224	25.737	0.25906	25.368	25.239	25.498	-0.36914	0.0027519	6.3721E-05	NaN	75.571	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48235000			2857	3888	1315	1336							0.004593669495079666
AEYRHPTVP	9	Unmodified	_AEYRHPTVP_					0	0	0		ASPM|p.N1062Rfs*28|1|0.1|ENSG00000066279|chr1:197124311-197124315|TAAGT/-|frameshift_variant;ASPM|p.N1680Kfs*11|1|0.33|ENSG00000066279|chr1:197104211-197104212|-/T|frameshift_variant;ASPM|p.I1717Nfs*24|1|0.43|ENSG00000066279|chr1:197104101-197104102|-/T|frameshift_variant;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.L1872Ffs*24|1|0.43|ENSG00000066279|chr1:197103635-197103636|-/A|frameshift_variant;ASPM|p.M2261*|1|0.44|ENSG00000066279|chr1:197102470-197102470|T/-|frameshift_variant;ASPM|p.Q2620Tfs*17|1|0.19|ENSG00000066279|chr1:197101393-197101394|-/T|frameshift_variant;ASPM|p.Q2620Nfs*22|1|0.15|ENSG00000066279|chr1:197101393-197101394|-/TT|frameshift_variant;ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant;ENSG00000066279|ENST00000367409|ASPM	ASPM|p.N1062Rfs*28|1|0.1|ENSG00000066279|chr1:197124311-197124315|TAAGT/-|frameshift_variant	ASPM|p.N1062Rfs*28|1|0.1|ENSG00000066279|chr1:197124311-197124315|TAAGT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	535.2742309570312	2	535.274898	1068.53524	0.49627	0.00026564	0.57454	0.00030754	1.0708	0.00057318	535.2752942851172	25.705	0.72822	25.336	25.03	25.758	-0.36914					22	13	2	0	0	0	0.13316	1	9319	9319		51.63	15.503	1	7240900			2858	202	1316	1337	2855	2855					0.0037168815770201036
AEYSGTVA	8	Unmodified	_AEYSGTVA_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	HCT116MG_D190212_S2	2	797.3680419921875	1	797.367575	796.360298	0.93042	0.00074189	-0.12056	-9.6134E-05	0.80986	0.00064575	797.3673849452503	24.905	0.25899	24.53	24.349	24.608	-0.37521					6	4	2	0	0	0	0.53394	1	8955	8955		38.151	6.0342	1	12160000			2859	5863	1317	1338	2856	2856					-0.04602731707325347
AEYSGTVA	8	Unmodified	_AEYSGTVA_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	HCT116MG_D190212_S3	3	797.3684692382812	1	797.367575	796.360298	0.76714	0.00061169	-0.37976	-0.00030281	0.38737	0.00030888	797.3671891734198	24.659	0.31237	24.575	24.393	24.705	-0.083694					8	5	2	0	0	0	0.60268	1	8792	8792		32.117	5.7757	1	3006800			2860	5863	1317	1338	2857	2857					-0.04602731707325347
AEYSGTVA	8	Unmodified	_AEYSGTVA_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	797.367575	796.360298	0.93042	0.00074189	-0.12056	-9.6134E-05	0.80986	0.00064575	797.3673849452503	24.905	0.25899	24.53	24.349	24.608	-0.37521	-0.022861	3.8293E-05	NaN	38.151	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12160000			2861	5863	1317	1338							-0.04602731707325347
AEYTAKIA	8	Unmodified	_AEYTAKIA_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MSMS	HCT116MG_D190212_S2	2	433.73455810546875	2	433.734543	865.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.167	1	26.814	26.314	27.314	-0.35254								0	0	0	0.8837	1	9856	9856		13.906	4.5586	1				2862	1586	1318	1339	2858	2858					0.016424071148207986
AEYTAKIA	8	Unmodified	_AEYTAKIA_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	HCT116MG_D190212_S3	3	433.7347106933594	2	433.734543	865.454533	0.20042	8.6927E-05	1.2077	0.00052382	1.4081	0.00061075	433.7343762513871	26.924	0.41686	26.754	26.599	27.016	-0.16933					9	7	2	0	0	0	0.46892	1	9703	9703		43.858	19.184	1	3299100			2863	1586	1318	1339	2859	2859					0.016424071148207986
AEYTKDVPP	9	Unmodified	_AEYTKDVPP_					0	0	0			REV__ENST00000585265.1_1_17:30807457-30807646:+|nuORF	REV__ENST00000585265.1_1_17:30807457-30807646:+|nuORF	MSMS	HCT116MG_D190212_S4	4	510.2544250488281	2	510.25584	1018.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.7	1	30.336	29.836	30.836	-0.36416								0	0	0	0.76641	1	11112	11112		13.508	0	1		+		2864	11351	1319	1340	2860	2860					-0.011382425476199387
AEYVGHLRA	9	Unmodified	_AEYVGHLRA_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6;ENST00000495515.1_1_X:48674602-48675118:+|nuORF;HDAC6|p.G751Afs*16|1|0.44|ENSG00000094631|chrX:48820165-48820165|G/-|frameshift_variant	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-MSMS	HCT116MG_D190212_S1	1	508.2701721191406	2	508.269616	1014.52468	0.34825	0.000177	0.32913	0.00016729	0.67738	0.00034429	508.2699204398261	26.787	0.31249	26.787	26.709	27.022	0					6	5	2	0	0	0	0.17622	1	9724	9724		43.772	1.6778	1	5887600			2865	1596	1320	1341	2861	2861					0.017997055032765275
AEYVGHLRA	9	Unmodified	_AEYVGHLRA_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6;ENST00000495515.1_1_X:48674602-48675118:+|nuORF;HDAC6|p.G751Afs*16|1|0.44|ENSG00000094631|chrX:48820165-48820165|G/-|frameshift_variant	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2701721191406	2	508.269616	1014.52468	0.59937	0.00030464	0.73522	0.00037369	1.3346	0.00067834	508.2697551954938	27.301	0.20778	26.949	26.818	27.026	-0.35254					6	3	2	0	0	0	0.030723	1	9918	9918		85.642	25.252	1	21440000			2866	1596	1320	1341	2862	2862					0.017997055032765275
AEYVHGSQA	9	Unmodified	_AEYVHGSQA_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MSMS	HCT116MG_D190212_S1	1	481.6280822753906	2	481.222331	960.430109	0.14171	6.8192E-05	0.6723	0.00032353	0.81401	0.00039172	481.2226393383624	18.376	0.15622	18.376	18.298	18.454	0					4	2	2	0	0	0	0.023778	1	6304	6304		92.653	28.417	1	1880500			2867	4840	1321	1342	2863	2863					-0.05168853038696852
AEYVHGSQA	9	Unmodified	_AEYVHGSQA_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MSMS	HCT116MG_D190212_S2	2	481.22222900390625	2	481.222331	960.430109	-0.062933	-3.0285E-05	0.27788	0.00013372	0.21495	0.00010344	481.22249501061657	18.904	0.41746	18.536	18.368	18.785	-0.36776					9	7	2	0	0	0	0.066823	1	6541	6541		66.457	14.188	1	8001600			2868	4840	1321	1342	2864	2864					-0.05168853038696852
AEYWPSME	8	Unmodified	_AEYWPSME_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;PTPRC|p.Q1150Pfs*6|1|0.27|ENSG00000081237|chr1:198752707-198752708|-/C|frameshift_variant;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;PTPRC|p.N1239Tfs*17|1|0.43|ENSG00000081237|chr1:198755972-198755972|A/-|frameshift_variant;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	HCT116MG_D190212_S2	2	1012.4116821289062	1	1012.40806	1011.40078	0.76477	0.00077426	2.4992	0.0025302	3.2639	0.0033044	1012.4113186632417	56.52	0.21037	56.338	56.207	56.418	-0.18261					7	3	3	0	0	0	0.31873	1	21829	21829		57.471	3.6386	1	19404000			2869	1412	1322	1343	2865	2865					-0.10446133379207367
AEYWPSME	8	Unmodified	_AEYWPSME_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;PTPRC|p.Q1150Pfs*6|1|0.27|ENSG00000081237|chr1:198752707-198752708|-/C|frameshift_variant;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;PTPRC|p.N1239Tfs*17|1|0.43|ENSG00000081237|chr1:198755972-198755972|A/-|frameshift_variant;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1012.40806	1011.40078	0.88154	0.00089248	3.9184	0.003967	4.7999	0.0048595	1012.4103462692802	56.327	0.15538	56.327	56.222	56.377	0	-0.0053504	0.0011563	NaN	57.471	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6408400			2870	1412	1322	1343							-0.10446133379207367
AEYYKVNP	8	Unmodified	_AEYYKVNP_					0	0	0			REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MSMS	HCT116MG_D190212_S1	1	492.2430725097656	2	492.245275	982.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.944	1	18.944	18.444	19.444	0								0	0	0	0.8396	1	6542	6542		19.439	2.4967	1		+		2871	12265	1323	1344	2866	2866					-0.015942078564762596
AEYYRQQAA	9	Unmodified	_AEYYRQQAA_					0	0	0		ENSG00000088247|ENST00000600480|KHSRP;FUBP1|p.Y625C|1|0.14|ENSG00000162613|chr1:77949207-77949207|T/C|missense_variant;ENST00000492724.1_1_1:78411324-78420943:-|nuORF;ENST00000487684.1_1_1:78414836-78421090:-|nuORF;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1;nc|ENSG00000088247|Q92945|KHSRP;KHSRP|p.Q699Sfs*24|1|0.35|ENSG00000088247|chr19:6415173-6415173|G/-|frameshift_variant	ENSG00000088247|ENST00000600480|KHSRP	ENSG00000088247|ENST00000600480|KHSRP	MULTI-MSMS	HCT116MG_D190212_S3	3	550.26171875	2	550.261988	1098.50942	0.2676	0.00014725	-0.13896	-7.6466E-05	0.12864	7.0783E-05	550.2618731947088	20.914	0.31225	20.949	20.818	21.131	0.034473					8	5	2	0	0	0	0.040027	1	7276	7276		79.596	33.897	1	6559700			2872	1493	1324	1345	2867	2867					-0.035892060845753804
AEYYRQQAA	9	Unmodified	_AEYYRQQAA_					0	0	0		ENSG00000088247|ENST00000600480|KHSRP;FUBP1|p.Y625C|1|0.14|ENSG00000162613|chr1:77949207-77949207|T/C|missense_variant;ENST00000492724.1_1_1:78411324-78420943:-|nuORF;ENST00000487684.1_1_1:78414836-78421090:-|nuORF;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1;nc|ENSG00000088247|Q92945|KHSRP;KHSRP|p.Q699Sfs*24|1|0.35|ENSG00000088247|chr19:6415173-6415173|G/-|frameshift_variant	ENSG00000088247|ENST00000600480|KHSRP	ENSG00000088247|ENST00000600480|KHSRP	MSMS	HCT116MG_D190212_S4	4	550.2623291015625	2	550.261988	1098.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.29	1	21.081	20.581	21.581	-0.20959								0	0	0	0.32965	1	7341	7341		37.974	15.238	1				2873	1493	1324	1345	2868	2868					-0.035892060845753804
AEYYRQQAA	9	Unmodified	_AEYYRQQAA_					0	0	0		ENSG00000088247|ENST00000600480|KHSRP;FUBP1|p.Y625C|1|0.14|ENSG00000162613|chr1:77949207-77949207|T/C|missense_variant;ENST00000492724.1_1_1:78411324-78420943:-|nuORF;ENST00000487684.1_1_1:78414836-78421090:-|nuORF;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1;nc|ENSG00000088247|Q92945|KHSRP;KHSRP|p.Q699Sfs*24|1|0.35|ENSG00000088247|chr19:6415173-6415173|G/-|frameshift_variant	ENSG00000088247|ENST00000600480|KHSRP	ENSG00000088247|ENST00000600480|KHSRP	MULTI-MATCH	HCT116MG_D190212_S4	4		2	550.261988	1098.50942	0.58787	0.00032348	0.35641	0.00019612	0.94428	0.0005196	550.2621607776296	21.203	0.20771	20.993	20.863	21.071	-0.20959	0.022281	0.00053677	NaN	79.596	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1617700			2874	1493	1324	1345							-0.035892060845753804
AEYYRQQVA	9	Unmodified	_AEYYRQQVA_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;ENST00000492199.1_1_9:133511276-133512406:+|nuORF	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2772216796875	2	564.277638	1126.54072	0.5015	0.00028298	-0.63513	-0.00035839	-0.13363	-7.5403E-05	564.2770878966007	25.075	0.20867	24.969	24.839	25.048	-0.10618					6	3	2	0	0	0	0.32155	1	8965	8965		28.495	10.121	1	6207400			2875	2104	1325	1346	2869	2869					-0.01748633050465287
AEYYWLRRRL	10	Unmodified	_AEYYWLRRRL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MSMS	HCT116MG_D190212_S3	3	713.3910522460938	2	713.391128	1424.7677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.978	1	53.679	53.179	54.179	-0.29946								0	0	0	0.96377	1	20443	20443		1.6526	0.17072	1				2876	6007	1326	1347	2870	2870					0.07230950228313304
AFAEKRALQMV	11	Unmodified	_AFAEKRALQMV_					0	0	0			REV__ENSG00000135776|ENST00000344517|ABCB10	REV__ENSG00000135776|ENST00000344517|ABCB10	MSMS	HCT116MG_D190212_S4	4	632.3492431640625	2	632.34754	1262.68053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.257	1	44.884	44.384	45.384	-0.37266								0	0	0	0.95636	1	16688	16688		2.9952	0.26005	1		+		2877	12107	1327	1348	2871	2871					0.059694079623795915
AFALRGGLAV	10	Unmodified	_AFALRGGLAV_					0	0	0			REV__ENST00000482692.1_1_7:28449401-28450235:+|nuORF	REV__ENST00000482692.1_1_7:28449401-28450235:+|nuORF	MSMS	HCT116MG_D190212_S2	2	487.89447021484375	2	487.792727	973.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.589	1	52.402	51.902	52.902	-0.18725								0	0	0	0.93576	1	20205	20205		7.9102	2.1497	1		+		2878	15967	1328	1349	2872	2872					0.08305770405377189
AFARKRRFPF	10	Unmodified	_AFARKRRFPF_					0	0	0		ENSG00000187533|ENST00000344526|PRR27	ENSG00000187533|ENST00000344526|PRR27	ENSG00000187533|ENST00000344526|PRR27	MSMS	HCT116MG_D190212_S3	3	648.3818969726562	2	648.377823	1294.74109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.8	1	43.494	42.994	43.994	-0.30616								0	0	0	0.96291	1	16354	16354		1.8442	0.36234	1				2879	5941	1329	1350	2873	2873					0.10551306127626958
AFDARYRHAY	10	Unmodified	_AFDARYRHAY_					0	0	0			REV__nc|ENSG00000211584|Q6P1K1-2|SLC48A1	REV__nc|ENSG00000211584|Q6P1K1-2|SLC48A1	MSMS	HCT116MG_D190212_S1	1	635.3092041015625	2	635.309803	1268.60505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.841	1	44.841	44.341	45.341	0								0	0	0	0.82636	1	16974	16974		25.399	4.9848	1		+		2880	14249	1330	1351	2874	2874					-0.01850433173649435
AFESYLSFM	9	Unmodified	_AFESYLSFM_					0	0	0		ENST00000514029.5_1_X:66900703-66914561:+|nuORF	ENST00000514029.5_1_X:66900703-66914561:+|nuORF	ENST00000514029.5_1_X:66900703-66914561:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.3330078125	2	547.746793	1093.47903	0.46934	0.00025708	-0.23442	-0.0001284	0.23492	0.00012868	547.7465056395641	44.406	0.26236	44.321	44.166	44.428	-0.084801					6	4	2	0	0	0	0.25004	1	16805	16805		15.847	5.0233	1	15458000			2881	8516	1331	1352	2875	2875					-0.06396700793970922
AFFEPPPGQGE	11	Unmodified	_AFFEPPPGQGE_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-MSMS	HCT116MG_D190212_S4	4	588.273681640625	2	588.272021	1174.52949	0.52763	0.00031039	-2.5929	-0.0015254	-2.0653	-0.001215	588.2705757871456	30.305	0.92143	29.948	29.129	30.05	-0.35711					24	19	2	0	0	0	0.70377	1	10737	10737		20.415	6.0092	1	7142000			2882	4858	1332	1353	2876	2876					-0.05079455144618805
AFIKIKMAFL	10	Unmodified	_AFIKIKMAFL_					0	0	0		RAD21|p.R90L|1|0.38|ENSG00000164754|chr8:116863135-116863135|C/A|missense_variant	RAD21|p.R90L|1|0.38|ENSG00000164754|chr8:116863135-116863135|C/A|missense_variant	RAD21|p.R90L|1|0.38|ENSG00000164754|chr8:116863135-116863135|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	591.3594360351562	2	591.359388	1180.70422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.768	1	51.417	50.917	51.917	-0.35028								0	0	0	0.89194	1	19277	19277		16.942	6.1184	1				2883	9799	1333	1354	2877	2877					0.12109873466874888
AFILTGIPYP	10	Unmodified	_AFILTGIPYP_					0	0	0		ENSG00000169208|ENST00000641040|OR10G3	ENSG00000169208|ENST00000641040|OR10G3	ENSG00000169208|ENST00000641040|OR10G3	MSMS	HCT116MG_D190212_S4	4	546.31201171875	2	546.310418	1090.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.57	1	37.186	36.686	37.686	-0.3839								0	0	0	0.91906	1	13792	13792		11.64	0.81637	1				2884	5056	1334	1355	2878	2878					0.06460388142522788
AFKEIFQSN	9	Unmodified	_AFKEIFQSN_					0	0	0		nc|ENSG00000155966|P51816-4|AFF2;AFF2|p.K978Rfs*65|1|0.46|ENSG00000155966|chrX:148966804-148966804|A/-|frameshift_variant;AFF2|p.Q1237Pfs*15|1|0.14|ENSG00000155966|chrX:148987448-148987449|-/C|frameshift_variant;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2	nc|ENSG00000155966|P51816-4|AFF2	nc|ENSG00000155966|P51816-4|AFF2	MULTI-MSMS	HCT116MG_D190212_S2	2	361.85369873046875	3	361.85383	1082.53966	-0.38651	-0.00013986	0.33908	0.0001227	-0.047436	-1.7165E-05	361.8537967877425	30.645	0.30879	30.378	30.199	30.508	-0.26704					12	5	3	0	0	0	0.45867	1	11283	11283		18.373	8.2225	1	63411000			2885	69	1335	1356	2879	2879					0.0016915258061089844
AFLPCLPP	8	Unmodified	_AFLPCLPP_					0	0	0			REV__UBR2|p.F881L|1|0.1|ENSG00000024048|chr6:42652519-42652519|C/A|missense_variant	REV__UBR2|p.F881L|1|0.1|ENSG00000024048|chr6:42652519-42652519|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	429.233642578125	2	429.233125	856.451696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24	1	23.938	23.438	24.438	-0.061449								0	0	0	0.8837	1	8501	8501		6.3541	0	1		+		2886	18039	1336	1357	2880	2880					0.017728604562989858
AFMLMYFVN	9	Unmodified	_AFMLMYFVN_					0	0	0			REV__ENST00000496416.1_1_21:43985963-43995993:+|nuORF	REV__ENST00000496416.1_1_21:43985963-43995993:+|nuORF	MSMS	HCT116MG_D190212_S3	3	379.180419921875	3	379.182013	1134.52421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.547	1	58.278	57.778	58.778	-0.26932								0	0	0	0.76995	1	22275	22275		1.0715	0.10919	1		+		2887	12819	1337	1358	2881	2881					-0.03767173532446577
AFNLWDGLQCP	11	Unmodified	_AFNLWDGLQCP_					0	0	0			REV__ENST00000450663.1_1_1:173111181-173111367:-|nuORF	REV__ENST00000450663.1_1_1:173111181-173111367:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	632.2945556640625	2	632.294973	1262.57539	0.58366	0.00036905	-0.9202	-0.00058184	-0.33654	-0.00021279	632.2941459942438	44.49	0.21156	44.49	44.357	44.568	0					8	3	3	0	0	0	0.73844	1	16858	16858		7.609	1.8771	1	12083000	+		2888	15707	1338	1359	2882	2882					-0.04539133234015935
AFPHVTSH	8	Unmodified	_AFPHVTSH_					0	0	0			REV__ENST00000541893.5_1_11:61557409-61557925:-|nuORF	REV__ENST00000541893.5_1_11:61557409-61557925:-|nuORF	MSMS	HCT116MG_D190212_S3	3	448.25091552734375	2	448.224677	894.434801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.788	1	15.874	15.374	16.374	0.085423								0	0	0	0.8837	1	5192	5192		13.508	4.1604	1		+		2889	16373	1339	1360	2883	2883					-0.0166392410529852
AFPQPDQPVTN	11	Unmodified	_AFPQPDQPVTN_					0	0	0			REV__CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant	REV__CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	607.2964477539062	2	607.296027	1212.5775	1.0654	0.00064703	-0.37909	-0.00023022	0.68634	0.00041681	607.2956892413027	27.797	1.0293	27.476	26.68	27.71	-0.32157					33	19	2	0	0	0	0.74109	1	10028	10028		6.6304	0.42459	1	3838500	+		2890	10111	1340	1361	2884	2884					-0.020283812245679655
AFSKGSNLTA	10	Unmodified	_AFSKGSNLTA_					0	0	0		nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181;ENSG00000197841|ENST00000492450|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	MULTI-MSMS	HCT116MG_D190212_S2	2	498.26165771484375	2	498.261456	994.50836	0.63648	0.00031713	0.016187	8.0652E-06	0.65266	0.0003252	498.2614271954569	39.226	0.15551	39.148	39.07	39.226	-0.077835					4	2	2	0	0	0	0.45751	1	14787	14787		38.176	3.7738	1	19786000			2891	6179	1341	1362	2885	2885					0.01088579546501478
AFVIGKGG	8	Unmodified	_AFVIGKGG_					0	0	0			REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	374.7210388183594	2	374.721239	747.427924	0.055635	2.0847E-05	0.051479	1.929E-05	0.10711	4.0138E-05	374.7211443164225	44.699	0.47008	44.614	44.428	44.899	-0.084797					17	8	3	0	0	0	0.66848	1	16981	16981		26.341	0	1	191420000	+		2892	17999	1342	1363	2886	2886					0.04410763014141139
AFVIGKGG	8	Unmodified	_AFVIGKGG_					0	0	0			REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	374.721239	747.427924	0.055635	2.0847E-05	0.051479	1.929E-05	0.10711	4.0138E-05	374.7211443164225	44.699	0.47008	44.614	44.428	44.899	-0.084797	-0.037962	0.00015792	NaN	26.341	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191420000	+		2893	17999	1342	1363							0.04410763014141139
AFVIGKGG	8	Unmodified	_AFVIGKGG_					0	0	0			REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	REV__tr|U7T6K5|U7T6K5_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00274PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	374.721239	747.427924	0.081684	3.0609E-05	-0.32564	-0.00012203	-0.24396	-9.1416E-05	374.72106765777505	44.999	0.25288	44.69	44.532	44.785	-0.30927	0.037962	-0.00012471	NaN	26.341	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6959400	+		2894	17999	1342	1363							0.04410763014141139
AFVSISIVV	9	Unmodified	_AFVSISIVV_					0	0	0			REV__tr|U7SSG8|U7SSG8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01445PE=4SV=1	REV__tr|U7SSG8|U7SSG8_FUSNUPolaraminoacidtransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01445PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	467.7848205566406	2	467.784036	933.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.412	1	44.038	43.538	44.538	-0.37373								0	0	0	0.7696	1	16361	16361		2.3027	0	1		+		2895	17766	1343	1364	2887	2887					0.08408430079725804
AFYMAWLS	8	Unmodified	_AFYMAWLS_					0	0	0		nc|ENSG00000111305|Q2KHT4-5|GSG1;nc|ENSG00000111305|Q2KHT4-2|GSG1;nc|ENSG00000111305|Q2KHT4-3|GSG1;nc|ENSG00000111305|Q2KHT4-6|GSG1;nc|ENSG00000111305|Q2KHT4|GSG1;ENSG00000111305|ENST00000651961|GSG1	nc|ENSG00000111305|Q2KHT4-5|GSG1	nc|ENSG00000111305|Q2KHT4-5|GSG1	MSMS	HCT116MG_D190212_S3	3	494.7322998046875	2	494.733489	987.452425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.932	1	55.645	55.145	56.145	-0.28773								0	0	0	0.8837	1	21223	21223		9.3474	0.75416	1				2896	2285	1344	1365	2888	2888					-0.041803448946552635
AGAAPDSAPGQ	11	Unmodified	_AGAAPDSAPGQ_					0	0	0		PNMT|p.A120Pfs*32|1|0.29|ENSG00000141744|chr17:39669780-39669780|G/-|frameshift_variant;PNMT|p.H210Tfs*20|1|0.23|ENSG00000141744|chr17:39670162-39670162|G/-|frameshift_variant;PNMT|p.H210Afs*27|1|0.46|ENSG00000141744|chr17:39670161-39670162|-/G|frameshift_variant;ENSG00000141744|ENST00000269582|PNMT	PNMT|p.A120Pfs*32|1|0.29|ENSG00000141744|chr17:39669780-39669780|G/-|frameshift_variant	PNMT|p.A120Pfs*32|1|0.29|ENSG00000141744|chr17:39669780-39669780|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	471.22052001953125	2	471.219788	940.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.686	1	15.772	15.272	16.272	0.085423								0	0	0	0.35655	1	5151	5151		53.833	15.657	1				2897	3733	1345	1366	2889	2889					-0.04757156901325743
AGAAPDSAPGQ	11	Unmodified	_AGAAPDSAPGQ_					0	0	0		PNMT|p.A120Pfs*32|1|0.29|ENSG00000141744|chr17:39669780-39669780|G/-|frameshift_variant;PNMT|p.H210Tfs*20|1|0.23|ENSG00000141744|chr17:39670162-39670162|G/-|frameshift_variant;PNMT|p.H210Afs*27|1|0.46|ENSG00000141744|chr17:39670161-39670162|-/G|frameshift_variant;ENSG00000141744|ENST00000269582|PNMT	PNMT|p.A120Pfs*32|1|0.29|ENSG00000141744|chr17:39669780-39669780|G/-|frameshift_variant	PNMT|p.A120Pfs*32|1|0.29|ENSG00000141744|chr17:39669780-39669780|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	471.2193298339844	2	471.219788	940.425024	-0.43166	-0.00020341	0.36333	0.00017121	-0.068331	-3.2199E-05	471.2199373117821	15.67	0.31176	15.508	15.305	15.617	-0.16173					8	5	2	0	0	0	0.54229	1	5079	5079		41.84	10.571	1	742720			2898	3733	1345	1366	2890	2890					-0.04757156901325743
AGAEEGEQTP	10	Unmodified	_AGAEEGEQTP_					0	0	0		ENST00000302926.6_1_17:7322009-7322306:+|nuORF	ENST00000302926.6_1_17:7322009-7322306:+|nuORF	ENST00000302926.6_1_17:7322009-7322306:+|nuORF	MSMS	HCT116MG_D190212_S3	3	494.7149658203125	2	494.714536	987.414519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.088	1	30.827	30.327	31.327	-0.26071								0	0	0	0.84701	1	11345	11345		22.736	4.5899	1				2899	7012	1346	1367	2891	2891					-0.07969184346427483
AGAFAPQP	8	Unmodified	_AGAFAPQP_					0	0	0		ENSG00000049283|ENST00000268933|EPN3;ENST00000512379.5_1_17:48610205-48619515:+|nuORF	ENSG00000049283|ENST00000268933|EPN3	ENSG00000049283|ENST00000268933|EPN3	MULTI-MSMS	HCT116MG_D190212_S2	2	758.3836669921875	1	758.383165	757.375889	1.2228	0.00092732	-0.28961	-0.00021964	0.93314	0.00070768	758.3828942571392	26.049	0.31218	25.68	25.55	25.862	-0.36914					8	5	2	0	0	0	0.79062	1	9411	9411		12.532	0	1	15857000			2900	1041	1347	1368	2892	2892					-0.012504003996241408
AGAGHRGV	8	Unmodified	_AGAGHRGV_					0	0	0			REV__ENST00000252934.9_1_22:46067795-46085660:+|nuORF	REV__ENST00000252934.9_1_22:46067795-46085660:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	724.0891723632812	1	724.384897	723.37762	1.2745	0.00092325	4.1464	0.0030036	5.4209	0.0039268	724.3878250422007	33.082	0.20834	32.871	32.739	32.948	-0.21135					5	3	2	0	0	0	0.84759	1	12252	12252		5.7604	0	1	28253000	+		2901	14590	1348	1369	2893	2893					0.004866534090069763
AGAGLAGGPL	10	Unmodified	_AGAGLAGGPL_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	392.2214660644531	2	392.221603	782.428653	-0.14723	-5.7745E-05	0.19352	7.5903E-05	0.046295	1.8158E-05	392.22163081940164	20.295	0.93748	20.343	19.738	20.676	0.048109					38	17	3	0	0	0	0.42503	1	6938	6938		40.449	0	1	13561000	+		2902	10284	1349	1370	2894	2894					0.02873557663201609
AGAGLAGGPL	10	Unmodified	_AGAGLAGGPL_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	392.2213439941406	2	392.221603	782.428653	-0.1729	-6.7816E-05	0.39036	0.00015311	0.21745	8.529E-05	392.2216259686109	21.203	1.3092	21.222	20.646	21.956	0.018448					53	24	3	0	0	0	0.54411	2	7179	7179;7290		32.117	0	1	18500000	+		2903	10284	1349	1370	2895;2896	2895					0.02873557663201609
AGAGLAGGPL	10	Unmodified	_AGAGLAGGPL_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	392.2214660644531	2	392.221603	782.428653	0.096378	3.7802E-05	0.10355	4.0613E-05	0.19993	7.8415E-05	392.2215071346418	20.627	0.88322	20.426	19.885	20.768	-0.20133					30	16	3	0	0	0	0.30919	1	6999	6999		49.669	11.518	1	9566200	+		2904	10284	1349	1370	2897	2897					0.02873557663201609
AGAGLAGGPL	10	Unmodified	_AGAGLAGGPL_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	392.2215576171875	2	392.221603	782.428653	0.10025	3.932E-05	0.13813	5.4176E-05	0.23838	9.3497E-05	392.22152374321166	21.449	1.194	21.23	20.699	21.893	-0.21832					48	22	3	0	0	0	0.42503	2	7248	7248;7474		40.449	6.3461	1	15902000	+		2905	10284	1349	1370	2898;2899	2898					0.02873557663201609
AGAGLAGGPL	10	Unmodified	_AGAGLAGGPL_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	392.221603	782.428653	0.072225	2.8328E-05	-0.039584	-1.5526E-05	0.032641	1.2803E-05	392.22153681055335	20.982	0.73036	20.599	20.18	20.91	-0.38288	0.14284	-0.00010819	NaN	49.669	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8297600	+		2906	10284	1349	1370							0.02873557663201609
AGAGLAGGPL	10	Unmodified	_AGAGLAGGPL_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	392.221603	782.428653	-0.14723	-5.7745E-05	0.19352	7.5903E-05	0.046295	1.8158E-05	392.22163081940164	20.295	0.93748	20.343	19.738	20.676	0.048109	-0.11271	7.4671E-05	NaN	49.669	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13561000	+		2907	10284	1349	1370							0.02873557663201609
AGAGLAGGPL	10	Unmodified	_AGAGLAGGPL_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	392.221603	782.428653	0.096378	3.7802E-05	0.10355	4.0613E-05	0.19993	7.8415E-05	392.2215071346418	20.627	0.88322	20.426	19.885	20.768	-0.20133	-0.030131	4.0917E-06	NaN	49.669	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9566200	+		2908	10284	1349	1370							0.02873557663201609
AGAGLPGLQ	9	Unmodified	_AGAGLPGLQ_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-SECPEP	HCT116MG_D190212_S2	2	392.8597412109375	2	392.221603	782.428653	-0.020469	-8.0283E-06	0.18788	7.3691E-05	0.16741	6.5663E-05	392.221544126522	21.811	0.77934	21.426	20.908	21.687	-0.38503					29	14	3	0	0	0	0.19551	1	7590	7590		26.884	12.302	1	15458000			2909	6630	1350	1371	2900	2900					0.028735576631788717
AGAGLPGLQ	9	Unmodified	_AGAGLPGLQ_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-MSMS	HCT116MG_D190212_S3	3	392.2215270996094	2	392.221603	782.428653	-0.1729	-6.7816E-05	0.39036	0.00015311	0.21745	8.529E-05	392.2216259686109	21.203	1.3092	21.222	20.646	21.956	0.018448					53	24	3	0	0	0	0.24973	1	7408	7408		36.044	1.8569	1	18500000			2910	6630	1350	1371	2901	2901					0.028735576631788717
AGAGLPGLQ	9	Unmodified	_AGAGLPGLQ_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	392.221603	782.428653	0.10025	3.932E-05	0.13813	5.4176E-05	0.23838	9.3497E-05	392.22152374321166	21.449	1.194	21.23	20.699	21.893	-0.21832	-0.062166	-9.6311E-05	NaN	36.044	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15902000			2911	6630	1350	1371							0.028735576631788717
AGAGLVPAGS	10	Unmodified	_AGAGLVPAGS_					0	0	0		ENST00000498121.1_1_21:47289198-47321357:+|nuORF	ENST00000498121.1_1_21:47289198-47321357:+|nuORF	ENST00000498121.1_1_21:47289198-47321357:+|nuORF	MSMS	HCT116MG_D190212_S2	2	400.2190246582031	2	400.21906	798.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.408	1	21.025	20.525	21.525	-0.38288								0	0	0	0.82636	1	7533	7533		25.399	3.6527	1				2912	8406	1351	1372	2902	2902					0.016292538005700408
AGAGLVPAGS	10	Unmodified	_AGAGLVPAGS_					0	0	0		ENST00000498121.1_1_21:47289198-47321357:+|nuORF	ENST00000498121.1_1_21:47289198-47321357:+|nuORF	ENST00000498121.1_1_21:47289198-47321357:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	400.2186584472656	2	400.21906	798.423567	0.10498	4.2016E-05	-0.94185	-0.00037695	-0.83687	-0.00033493	400.2185325896943	20.177	0.87387	19.976	19.322	20.196	-0.20133					21	16	2	0	0	0	0.4604	1	6818	6818		37.974	1.847	1	1614200			2913	8406	1351	1372	2903	2903					0.016292538005700408
AGAKTSRY	8	Unmodified	_AGAKTSRY_					0	0	0			REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	MSMS	HCT116MG_D190212_S1	1	427.22998046875	2	427.229959	852.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.767	1	21.767	21.267	22.267	0								0	0	0	0.70483	1	7674	7674		30.225	9.7712	1		+		2914	9832	1352	1373	2904	2904					0.013240585491303136
AGAKTSRY	8	Unmodified	_AGAKTSRY_					0	0	0			REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	427.23004150390625	2	427.229959	852.445365	0.17398	7.433E-05	-0.33778	-0.00014431	-0.1638	-6.998E-05	427.2298925131564	22.29	0.8314	21.905	21.375	22.206	-0.38521					33	15	3	0	0	0	0.55794	1	7845	7845		36.044	0	1	34591000	+		2915	9832	1352	1373	2905	2905					0.013240585491303136
AGAKTSRY	8	Unmodified	_AGAKTSRY_					0	0	0			REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	427.2298278808594	2	427.229959	852.445365	0.20919	8.9373E-05	-0.12151	-5.1911E-05	0.087685	3.7462E-05	427.22981363006164	22.037	0.9865	21.81	21.157	22.143	-0.22777					50	18	4	0	0	0	0.71077	1	7483	7483		21.747	4.6338	1	33929000	+		2916	9832	1352	1373	2906	2906					0.013240585491303136
AGAKTSRY	8	Unmodified	_AGAKTSRY_					0	0	0			REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	427.229959	852.445365	0.17398	7.433E-05	-0.33778	-0.00014431	-0.1638	-6.998E-05	427.2298925131564	22.29	0.8314	21.905	21.375	22.206	-0.38521	0.075014	-0.00022634	NaN	36.044	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34591000	+		2917	9832	1352	1373							0.013240585491303136
AGALGSPW	8	Unmodified	_AGALGSPW_					0	0	0		ENST00000588681.5_1_19:11494800-11494992:-|nuORF	ENST00000588681.5_1_19:11494800-11494992:-|nuORF	ENST00000588681.5_1_19:11494800-11494992:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	379.695068359375	2	379.695221	757.375889	0.064067	2.4326E-05	0.21704	8.241E-05	0.28111	0.00010674	379.6952067325616	26.045	0.26006	25.676	25.498	25.758	-0.36914					8	4	3	0	0	0	0.81821	1	9410	9410		9.3474	0	1	13768000			2918	9014	1353	1374	2907	2907					-0.012504003996241408
AGALRGVLDPA	11	Unmodified	_AGALRGVLDPA_					0	0	0		ENST00000196061.4_1_1:12034865-12035195:+|nuORF	ENST00000196061.4_1_1:12034865-12035195:+|nuORF	ENST00000196061.4_1_1:12034865-12035195:+|nuORF	MSMS	HCT116MG_D190212_S1	1	520.3165283203125	2	520.298373	1038.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.096	1	33.096	32.596	33.596	0								0	0	0	0.93552	1	12236	12236		13.906	3.0821	1				2919	6722	1354	1375	2908	2908					0.06444547708861137
AGAPGGGVL	9	Unmodified	_AGAPGGGVL_					0	0	0		ENSG00000153976|ENST00000284110|HS3ST3A1;HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant	ENSG00000153976|ENST00000284110|HS3ST3A1	ENSG00000153976|ENST00000284110|HS3ST3A1	MULTI-MSMS	HCT116MG_D190212_S1	1	698.3834838867188	1	698.383165	697.375889	0.75784	0.00052926	-0.32223	-0.00022504	0.4356	0.00030422	698.3829895207585	22.194	0.20893	22.194	22.063	22.272	0					5	3	2	0	0	0	0.54041	1	7865	7865		14.582	2.9414	1	3475800			2920	4201	1355	1376	2909	2909					0.015095996003765322
AGAPGPELQGG	11	Unmodified	_AGAPGPELQGG_					0	0	0			REV__ENSG00000135925|ENST00000258411|WNT10A	REV__ENSG00000135925|ENST00000258411|WNT10A	MULTI-MSMS	HCT116MG_D190212_S2	2	477.2376708984375	2	477.237981	952.461409	0.10176	4.8564E-05	0.076189	3.636E-05	0.17795	8.4924E-05	477.2378730212897	15.543	0.52116	15.216	14.967	15.488	-0.32684					13	9	2	0	0	0	0.39464	1	5168	5168		55.503	0.26809	1	5677200	+		2921	12111	1356	1377	2910	2910					-0.016722800046068187
AGAPGPELQGG	11	Unmodified	_AGAPGPELQGG_					0	0	0			REV__ENSG00000135925|ENST00000258411|WNT10A	REV__ENSG00000135925|ENST00000258411|WNT10A	MULTI-MATCH	HCT116MG_D190212_S1	1		2	477.237981	952.461409	0.21258	0.00010145	-0.36935	-0.00017627	-0.15677	-7.4817E-05	477.23772085861617	15.443	0.15637	15.443	15.327	15.484	0	0.11349	-0.00028538	NaN	55.503	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1613000	+		2922	12111	1356	1377							-0.016722800046068187
AGAPGPELQGG	11	Unmodified	_AGAPGPELQGG_					0	0	0			REV__ENSG00000135925|ENST00000258411|WNT10A	REV__ENSG00000135925|ENST00000258411|WNT10A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	477.237981	952.461409	0.10176	4.8564E-05	0.076189	3.636E-05	0.17795	8.4924E-05	477.2378730212897	15.543	0.52116	15.216	14.967	15.488	-0.32684	-0.11349	0.00013988	NaN	55.503	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5677200	+		2923	12111	1356	1377							-0.016722800046068187
AGAQGLRVFFP	11	Unmodified	_AGAQGLRVFFP_					0	0	0		ENST00000597648.5_1_19:17970943-17971054:+|nuORF	ENST00000597648.5_1_19:17970943-17971054:+|nuORF	ENST00000597648.5_1_19:17970943-17971054:+|nuORF	MSMS	HCT116MG_D190212_S1	1	388.2097473144531	3	388.217102	1161.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.769	1	24.769	24.269	25.269	0								0	0	0	0.93717	1	8881	8881		7.0371	1.2537	1				2924	9073	1357	1378	2911	2911					0.05512826979838792
AGAQKEQAAR	10	Unmodified	_AGAQKEQAAR_					0	0	0		ENST00000338624.10_1_19:54692188-54693320:-|nuORF	ENST00000338624.10_1_19:54692188-54693320:-|nuORF	ENST00000338624.10_1_19:54692188-54693320:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.7618408203125	2	515.275429	1028.53631	0.20344	0.00010483	-0.39815	-0.00020516	-0.19471	-0.00010033	515.2753518859926	19.231	0.20817	18.862	18.732	18.94	-0.3695					5	3	2	0	0	0	0.19558	1	6659	6659		49.554	21.925	1	8199400			2925	7202	1358	1379	2912	2912					0.02317902526601756
AGARGGSG	8	Unmodified	_AGARGGSG_					0	0	0		ENST00000371739.3_1_9:139256615-139258104:-|nuORF	ENST00000371739.3_1_9:139256615-139258104:-|nuORF	ENST00000371739.3_1_9:139256615-139258104:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	632.3138427734375	1	632.311063	631.303787	0.49205	0.00031113	3.1952	0.0020203	3.6872	0.0023315	632.3128631295621	39.251	0.21401	38.95	38.82	39.034	-0.30137					5	3	2	0	0	0	0.7524	1	14585	14585		16.942	0	1	3913800			2926	7446	1359	1380	2913	2913					-0.026613147533339543
AGARGGSG	8	Unmodified	_AGARGGSG_					0	0	0		ENST00000371739.3_1_9:139256615-139258104:-|nuORF	ENST00000371739.3_1_9:139256615-139258104:-|nuORF	ENST00000371739.3_1_9:139256615-139258104:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		1	632.311063	631.303787	0.42208	0.00026689	3.0431	0.0019242	3.4652	0.0021911	632.3128956828866	38.941	0.1556	38.941	38.851	39.007	0	-0.0046062	-4.339E-05	NaN	16.942	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5608800			2927	7446	1359	1380							-0.026613147533339543
AGATGSLY	8	Unmodified	_AGATGSLY_					0	0	0			REV__ENST00000575338.1_1_17:1998187-1998313:-|nuORF	REV__ENST00000575338.1_1_17:1998187-1998313:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	739.3632202148438	1	739.362096	738.354819	0.57932	0.00042833	0.82106	0.00060706	1.4004	0.0010354	739.3624571444318	18.71	0.25949	18.346	18.217	18.477	-0.36325					6	4	2	0	0	0	0.66848	1	6479	6479		26.341	1.6674	1	4957600	+		2928	16603	1360	1381	2914	2914					-0.02482410499146681
AGATPDPAGHV	11	Unmodified	_AGATPDPAGHV_					0	0	0			REV__ZSWIM6|p.E613Rfs*5|1|0.2|ENSG00000130449|chr5:61526387-61526388|-/A|frameshift_variant	REV__ZSWIM6|p.E613Rfs*5|1|0.2|ENSG00000130449|chr5:61526387-61526388|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	496.7436218261719	2	496.743431	991.472308	0.45926	0.00022814	-0.453	-0.00022503	0.0062629	3.111E-06	496.7433184805379	21.478	1.6619	21.26	20.179	21.841	-0.21832					57	31	4	0	0	0	0.71887	1	7108	7108		14.838	2.5976	1	10611000	+		2929	11922	1361	1382	2915	2915					-0.023768776303313643
AGCGKSCYGQA	11	Unmodified	_AGCGKSCYGQA_					0	0	0		ENST00000263856.8_1_2:86732285-86732549:-|nuORF	ENST00000263856.8_1_2:86732285-86732549:-|nuORF	ENST00000263856.8_1_2:86732285-86732549:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	523.7594604492188	2	522.715501	1043.41645	0.38125	0.00019929	-0.48381	-0.00025289	-0.10255	-5.3606E-05	522.7153528858845	15.87	0.20823	15.87	15.744	15.952	0					8	3	3	0	0	0	0.74191	1	5255	5255		5.7319	0.43497	1	10174000			2930	6885	1362	1383	2916	2916					-0.10352170133819527
AGCGRHAT	8	Unmodified	_AGCGRHAT_					0	0	0		ENST00000596373.1_1_19:53686195-53696578:-|nuORF	ENST00000596373.1_1_19:53686195-53696578:-|nuORF	ENST00000596373.1_1_19:53686195-53696578:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	772.351318359375	1	772.351882	771.344606	0.79064	0.00061065	-1.2277	-0.00094818	-0.43702	-0.00033753	772.3508361469097	37.413	0.25674	37.31	37.129	37.385	-0.10318					6	4	2	0	0	0	0.77285	1	14014	14014		14.582	0	1	38608000			2931	9064	1363	1384	2917	2917					-0.05021296705376699
AGCHGAIM	8	Unmodified	_AGCHGAIM_					0	0	0			REV__ENST00000590120.1_1_19:13213068-13213167:-|nuORF	REV__ENST00000590120.1_1_19:13213068-13213167:-|nuORF	MSMS	HCT116MG_D190212_S2	2	380.16717529296875	2	380.167459	758.320365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.833	1	29.532	29.032	30.032	-0.30095								0	0	0	0.8837	1	10943	10943		6.3541	4.0514	1		+		2932	16684	1364	1385	2918	2918					-0.06846273183236917
AGDDAPRAV	9	Unmodified	_AGDDAPRAV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ACTA1|p.G22D|1|0.25|ENSG00000143632|chr1:229433051-229433051|C/T|missense_variant;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MSMS	HCT116MG_D190212_S2	2	435.77374267578125	2	436.217049	870.419545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.043	1	20.66	20.16	21.16	-0.38288								0	0	0	0.054343	1	7385	7385		69.105	20.759	1				2933	1322;3824	1365	1386	2919	2919					-0.020848356931537637
AGDDTRTWG	9	Unmodified	_AGDDTRTWG_					0	0	0		nc|ENSG00000175600|Q9HAC7-4|SUGCT;SUGCT|p.S389Wfs*17|1|0.03|ENSG00000175600|chr7:40749486-40749487|-/ATGGCAAAACACAGAAGTG|frameshift_variant;nc|ENSG00000175600|Q9HAC7-2|SUGCT;ENSG00000175600|ENST00000335693|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT	nc|ENSG00000175600|Q9HAC7-4|SUGCT	nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-MSMS	HCT116MG_D190212_S2	2	978.4280395507812	1	978.427549	977.420273	0.5929	0.00058011	0.16011	0.00015666	0.75301	0.00073677	978.4275899692053	26.463	0.20762	26.102	26.024	26.232	-0.36164					5	3	2	0	0	0	0.23138	1	9605	9605		37.974	1.847	1	17263000			2934	5388	1366	1387	2920	2920					-0.06934041044110018
AGDQGGSAK	9	Unmodified	_AGDQGGSAK_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S1	1	790.3699340820312	1	790.368972	789.361695	0.41505	0.00032804	0.27886	0.0002204	0.69391	0.00054844	790.3689655821381	38.79	0.62355	38.79	38.332	38.955	0					16	11	3	0	0	0	0.73263	1	14472	14472		2.9952	0.10602	1	34644000	+		2935	12349	1367	1388	2921	2921					-0.04141097618571621
AGDTPKRSAI	10	Unmodified	_AGDTPKRSAI_					0	0	0			REV__nc|ENSG00000132780|P49321-2|NASP	REV__nc|ENSG00000132780|P49321-2|NASP	MULTI-SECPEP	HCT116MG_D190212_S1	1	507.8134460449219	2	508.28018	1014.54581	0.35748	0.0001817	1.055	0.00053624	1.4125	0.00071794	508.28061321660437	47.336	0.68779	47.336	46.907	47.595	0					15	13	2	0	0	0	0.3029	1	17952	17952		10.824	10.824	1	6424300	+		2936	12002	1368	1389	2922	2922					0.03911670812135526
AGEAFARDQ	9	Unmodified	_AGEAFARDQ_					0	0	0		ENST00000395395.6_1_9:97062480-97062831:+|nuORF	ENST00000395395.6_1_9:97062480-97062831:+|nuORF	ENST00000395395.6_1_9:97062480-97062831:+|nuORF	MSMS	HCT116MG_D190212_S3	3	482.7275695800781	2	482.727781	963.441008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.213	1	24.151	23.651	24.651	-0.061449								0	0	0	0.69648	1	8587	8587		19.257	1.1106	1				2937	7644	1369	1390	2923	2923					-0.04217450664430089
AGEAPTENPAP	11	Unmodified	_AGEAPTENPAP_					0	0	0		ENSG00000060138|ENST00000228251|YBX3;ENST00000542002.5_1_12:10853889-10868397:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3;ENST00000540447.5_1_12:10853889-10854789:-|nuORF;ENST00000536823.5_1_12:10853889-10856822:-|nuORF	ENSG00000060138|ENST00000228251|YBX3	ENSG00000060138|ENST00000228251|YBX3	MSMS	HCT116MG_D190212_S4	4	527.2459716796875	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.951	1	32.569	32.069	33.069	-0.38223								0	0	0	0.92235	1	12022	12022		17.113	0.96379	1				2938	1106	1370	1391	2924	2924					-0.04668618558389426
AGEAPTLRGP	10	Unmodified	_AGEAPTLRGP_					0	0	0			REV__SEMA6B|p.R276Afs*11|3|0.39|ENSG00000167680|chr19:4552585-4552585|G/-|frameshift_variant	REV__SEMA6B|p.R276Afs*11|3|0.39|ENSG00000167680|chr19:4552585-4552585|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	485.6441955566406	2	484.761623	967.508694	0.035713	1.7312E-05	0.28957	0.00014037	0.32528	0.00015768	484.7617267629472	14.725	0.4693	14.405	14.244	14.714	-0.31952					12	8	2	0	0	0	0.75427	1	4929	4929		15.847	1.9411	1	1289600	+		2939	13159	1371	1392	2925	2925					0.023639992663902376
AGEFHGEG	8	Unmodified	_AGEFHGEG_					0	0	0			REV__ENST00000591753.1_2_17:40715869-40717983:+|nuORF	REV__ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	804.41015625	1	803.331858	802.324582	0.64171	0.0005155	-1.1768	-0.00094539	-0.53513	-0.00042989	803.3312162082298	36.775	0.20803	36.775	36.627	36.835	0					6	3	2	0	0	0	0.84759	1	13679	13679		5.7604	2.8712	1	3711300	+		2940	16694	1372	1393	2926	2926					-0.08448769164317582
AGEGLLRSQA	10	Unmodified	_AGEGLLRSQA_					0	0	0		ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant;ARHGEF17|p.M1011Sfs*2|1|0.32|ENSG00000110237|chr11:73311670-73311670|T/-|frameshift_variant;ENSG00000110237|ENST00000263674|ARHGEF17	ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant	ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	501.272216796875	2	501.272355	1000.53016	0.32462	0.00016272	-0.11651	-5.8405E-05	0.20811	0.00010432	501.2723487229892	15.893	0.26102	15.559	15.376	15.637	-0.33451					6	4	2	0	0	0	0.60826	1	5340	5340		27.629	2.2295	1	3540700			2941	180	1373	1394	2927	2927					0.02991384295091848
AGEHAAGAGQP	11	Unmodified	_AGEHAAGAGQP_					0	0	0		ENST00000609471.1_1_9:139694428-139695055:+|nuORF;ENST00000430612.5_1_9:139694098-139697135:+|nuORF	ENST00000609471.1_1_9:139694428-139695055:+|nuORF	ENST00000609471.1_1_9:139694428-139695055:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	482.7275085449219	2	483.225405	964.436257	0.13944	6.738E-05	1.1232	0.00054276	1.2626	0.00061014	483.225754105644	20.008	0.92599	19.814	19.434	20.36	-0.19367					23	17	2	0	0	0	0.3177	1	6890	6890		20.415	4.5674	1	2654700			2942	7849	1374	1395	2928	2928					-0.047383348071889486
AGEKYNDNFWK	11	Unmodified	_AGEKYNDNFWK_					0	0	0		ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENST00000415545.2_1_1:92108345-92109332:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	686.31982421875	2	686.320034	1370.62551	0.65403	0.00044887	-0.71033	-0.00048752	-0.056308	-3.8645E-05	686.3194440352962	23.649	0.57203	23.402	23.116	23.688	-0.24775					16	10	2	0	0	0	0.7259	1	8304	8304		12.241	4.6317	1	2872700			2943	7752	1375	1396	2929	2929					-0.04497307304563947
AGENEARGSPC	11	Unmodified	_AGENEARGSPC_					0	0	0			REV__ENST00000461791.1_1_3:196381463-196381676:+|nuORF	REV__ENST00000461791.1_1_3:196381463-196381676:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7334594726562	2	545.732737	1089.45092	0.41926	0.0002288	1.0742	0.00058624	1.4935	0.00081504	545.7331382628138	23.327	0.6228	22.941	22.726	23.349	-0.38521					15	11	2	0	0	0	0.50445	1	8299	8299		45.74	7.5643	1	45201000	+		2944	15788	1376	1397	2930	2930					-0.09022630721347014
AGENEARGSPC	11	Unmodified	_AGENEARGSPC_					0	0	0			REV__ENST00000461791.1_1_3:196381463-196381676:+|nuORF	REV__ENST00000461791.1_1_3:196381463-196381676:+|nuORF	MSMS	HCT116MG_D190212_S4	4	545.7333374023438	2	545.732737	1089.45092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.082	1	22.845	22.345	23.345	-0.23758								0	0	0	0.83401	1	8063	8063		28.495	0.86571	1		+		2945	15788	1376	1397	2931	2931					-0.09022630721347014
AGEPGLPGR	9	Unmodified	_AGEPGLPGR_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-MSMS	HCT116MG_D190212_S3	3	427.2296447753906	2	427.229959	852.445365	0.11411	4.8751E-05	0.021696	9.2694E-06	0.13581	5.8021E-05	427.22988254035783	21.758	1.1012	21.775	21.166	22.267	0.017384					52	20	4	0	0	0	0.35128	1	7459	7459		25.399	2.2509	1	42816000			2946	511	1377	1398	2932	2932					0.013240585491416823
AGEREKSLP	9	Unmodified	_AGEREKSLP_					0	0	0		ENST00000374466.3_1_10:43633951-43650361:+|nuORF	ENST00000374466.3_1_10:43633951-43650361:+|nuORF	ENST00000374466.3_1_10:43633951-43650361:+|nuORF	MSMS	HCT116MG_D190212_S2	2	493.7675476074219	2	493.766906	985.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.484	1	29.183	28.683	29.683	-0.30095								0	0	0	0.44802	1	10802	10802		31.268	0.6318	1				2947	7496	1378	1399	2933	2933					0.025919819208070294
AGERPGPAA	9	Unmodified	_AGERPGPAA_					0	0	0			REV__ENSG00000130940|ENST00000377022|CASZ1	REV__ENSG00000130940|ENST00000377022|CASZ1	MULTI-MSMS	HCT116MG_D190212_S2	2	825.4205322265625	1	825.421342	824.414065	0.84921	0.00070096	-0.26326	-0.0002173	0.58595	0.00048366	825.4208812218524	17.667	0.20877	17.31	17.18	17.388	-0.35647					5	3	2	0	0	0	0.21251	1	6046	6046		39.957	1.9833	1	3890000	+		2948	11946	1379	1400	2934	2934					-0.005165144849570424
AGESWRRRPQ	10	Unmodified	_AGESWRRRPQ_					0	0	0			REV__ENST00000331238.6_1_17:1928400-1928577:-|nuORF	REV__ENST00000331238.6_1_17:1928400-1928577:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	621.288330078125	2	621.826152	1241.63775	0.53108	0.00033024	-0.85125	-0.00052933	-0.32018	-0.00019909	622.3272866582735	19.678	0.15668	19.678	19.6	19.756	0					4	2	2	0	0	0	0.28114	1	6850	6850		20.454	8.213	1	3119500	+		2949	14931	1380	1401	2935	2935					0.026597739491762695
AGETKSHYGTP	11	Unmodified	_AGETKSHYGTP_					0	0	0			REV__nc|ENSG00000156313|Q92834-4|RPGR	REV__nc|ENSG00000156313|Q92834-4|RPGR	MSMS	HCT116MG_D190212_S4	4	574.2722778320312	2	574.272552	1146.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.645	1	23.397	22.897	23.897	-0.24775								0	0	0	0.62599	1	8290	8290		41.956	10.687	1		+		2950	17174	1381	1402	2936	2936					-0.03685240775712373
AGEVGLLA	8	Unmodified	_AGEVGLLA_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	729.4141235351562	1	729.414131	728.406855	1.3369	0.00097515	-0.12801	-9.3374E-05	1.2089	0.00088178	729.4139021714747	43.711	0.30846	43.633	43.453	43.762	-0.078373					9	5	2	0	0	0	0.23352	1	16613	16613		67.035	7.2401	1	16532000	+		2951	12448	1382	1403	2937	2937					0.0317875291460723
AGEVQPHQ	8	Unmodified	_AGEVQPHQ_					0	0	0			REV__ENST00000487069.5_1_7:36320704-36320809:+|nuORF	REV__ENST00000487069.5_1_7:36320704-36320809:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	433.2117004394531	2	433.211766	864.40898	0.13241	5.7363E-05	0.054069	2.3423E-05	0.18648	8.0787E-05	433.2116498009639	19.53	0.52094	19.59	19.333	19.854	0.05983					22	9	3	0	0	0	0.51336	1	6697	6697		39.957	1.9833	1	11806000	+		2952	15999	1383	1404	2938	2938					-0.02864818347563869
AGEVQPHQ	8	Unmodified	_AGEVQPHQ_					0	0	0			REV__ENST00000487069.5_1_7:36320704-36320809:+|nuORF	REV__ENST00000487069.5_1_7:36320704-36320809:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	433.211766	864.40898	0.13241	5.7363E-05	0.054069	2.3423E-05	0.18648	8.0787E-05	433.2116498009639	19.53	0.52094	19.59	19.333	19.854	0.05983	0.031218	4.7775E-05	NaN	39.957	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11806000	+		2953	15999	1383	1404							-0.02864818347563869
AGFHPGGSCQV	11	Unmodified	_AGFHPGGSCQV_					0	0	0		ENST00000377245.8_3_9:71789208-71827482:+|nuORF	ENST00000377245.8_3_9:71789208-71827482:+|nuORF	ENST00000377245.8_3_9:71789208-71827482:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2376708984375	2	530.237458	1058.46036	0.55999	0.00029693	-0.58901	-0.00031232	-0.029019	-1.5387E-05	530.2369645888529	37.629	0.26055	37.629	37.499	37.759	0					9	4	3	0	0	0	0.67041	1	14101	14101		27.629	4.4804	1	6063400			2954	7523	1384	1405	2939	2939					-0.06652817645158393
AGFNKVDIAK	10	Unmodified	_AGFNKVDIAK_					0	0	0			REV__tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1	REV__tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	355.0697937011719	3	354.869591	1061.58694	-0.045792	-1.625E-05	-0.057042	-2.0243E-05	-0.10283	-3.6493E-05	354.86943507512774	26.934	0.31258	26.765	26.547	26.859	-0.16933					12	5	3	0	0	0	0.87949	1	9694	9694		3.5871	0.85186	1	7468700	+		2955	17691	1385	1406	2940	2940					0.058614318515992636
AGFNKVDIAK	10	Unmodified	_AGFNKVDIAK_					0	0	0			REV__tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1	REV__tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	355.0698547363281	3	354.869591	1061.58694	0.022398	7.9484E-06	-0.2797	-9.9257E-05	-0.2573	-9.1309E-05	354.8694964679169	27.186	0.208	26.875	26.742	26.95	-0.3114					5	3	2	0	0	0	0.87949	1	9720	9720		3.5871	0.85186	1	1643600	+		2956	17691	1385	1406	2941	2941					0.058614318515992636
AGFSGGMV	8	Unmodified	_AGFSGGMV_					0	0	0		ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000496153.5_1_7:73097949-73108381:+|nuORF;ENST00000487006.2_1_7:73101416-73107745:+|nuORF;ENST00000421744.5_1_7:73101164-73110778:+|nuORF;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENST00000436944.5_1_7:73101164-73117856:+|nuORF	ENSG00000071462|ENST00000265758|BUD23	ENSG00000071462|ENST00000265758|BUD23	MSMS	HCT116MG_D190212_S2	2	362.8826904296875	2	363.167982	724.32141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.949	1	38.865	38.365	39.365	-0.084618								0	0	0	0.8837	1	14644	14644		5.7604	0	1				2957	1254	1386	1407	2942	2942					-0.05177735542679329
AGFYGSGR	8	Unmodified	_AGFYGSGR_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-MSMS	HCT116MG_D190212_S2	2	407.6956481933594	2	407.695752	813.376952	-0.10067	-4.1042E-05	0.32998	0.00013453	0.22931	9.3489E-05	407.69569574873304	23.76	0.3126	23.377	23.195	23.508	-0.38324					10	5	3	0	0	0	0.58007	1	8487	8487		34.102	1.9855	1	25986000			2958	6456	1387	1408	2943	2943					-0.03720186030705008
AGGCCCFE	8	Unmodified	_AGGCCCFE_					0	0	0			REV__ENST00000345046.10_1_X:152988698-152989941:-|nuORF	REV__ENST00000345046.10_1_X:152988698-152989941:-|nuORF	MSMS	HCT116MG_D190212_S1	1	395.1207580566406	2	395.12186	788.229166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.91	1	64.91	64.41	65.41	0								0	0	0	0.8837	1	25008	25008		0.79363	0.79363	1		+		2959	15006	1388	1409	2944	2944					-0.17341904942884412
AGGFVYTY	8	Unmodified	_AGGFVYTY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000562722.1_1_16:70597761-70599451:+|nuORF;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	HCT116MG_D190212_S2	2	877.4094848632812	1	877.409046	876.401769	0.8133	0.0007136	-0.57044	-0.00050051	0.24286	0.00021309	877.4089320392501	45.426	0.51419	45.334	45.153	45.667	-0.092472					22	9	4	0	0	0	0.3344	1	17254	17254		56.048	31.374	1	266670000			2960	6018	1389	1410	2945	2945					-0.041375509480189976
AGGGSVLK	8	Unmodified	_AGGGSVLK_					0	0	0		ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	MULTI-MSMS	HCT116MG_D190212_S2	2	688.3990478515625	1	688.398815	687.391539	0.76179	0.00052441	0.30795	0.00021199	1.0697	0.00073641	688.3988075640942	24.124	0.20705	23.744	23.615	23.822	-0.38003					5	3	2	0	0	0	0.6854	1	8649	8649		24.674	6.5389	1	4447100			2961	6091	1390	1411	2946	2946					0.03533886117418206
AGGHLPAG	8	Unmodified	_AGGHLPAG_					0	0	0		ENST00000422725.3_1_1:1534667-1534814:-|nuORF	ENST00000422725.3_1_1:1534667-1534814:-|nuORF	ENST00000422725.3_1_1:1534667-1534814:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	679.3527221679688	1	679.3522	678.344923	0.72505	0.00049256	-0.0050028	-3.3987E-06	0.72005	0.00048916	679.3519908207985	19.952	0.26145	19.952	19.809	20.07	0					7	4	2	0	0	0	0.37531	1	6967	6967		52.334	19.881	1	7249700			2962	7794	1391	1412	2947	2947					-0.007115537138588479
AGGKKLAL	8	Unmodified	_AGGKKLAL_					0	0	0		nc|ENSG00000107771|Q9H7U1-2|CCSER2;nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2	nc|ENSG00000107771|Q9H7U1-2|CCSER2	nc|ENSG00000107771|Q9H7U1-2|CCSER2	MSMS	HCT116MG_D190212_S3	3	379.21661376953125	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.878	1	55.59	55.09	56.09	-0.28773								0	0	0	0.8837	1	21201	21201		0.79363	0	1				2963	2128	1392	1413	2948	2948					0.09779024939541614
AGGLPLTL	8	Unmodified	_AGGLPLTL_					0	0	0			REV__nc|ENSG00000188732|A4D161-2|FAM221A	REV__nc|ENSG00000188732|A4D161-2|FAM221A	MSMS	HCT116MG_D190212_S3	3	371.22735595703125	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.801	1	34.504	34.004	35.004	-0.29707								0	0	0	0.8837	1	12823	12823		6.3541	3.4649	1		+		2964	13967	1393	1414	2949	2949					0.06263629811314786
AGGMEQSRR	9	Unmodified	_AGGMEQSRR_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18;REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	HCT116MG_D190212_S3	3	496.21063232421875	2	496.240532	990.466512	0.22354	0.00011093	-0.41854	-0.0002077	-0.195	-9.6765E-05	496.2400581986561	31.152	0.31332	30.891	30.709	31.022	-0.26071					7	5	2	0	0	0	0.23301	1	11320	11320		15.847	0	1	3039000	+		2965	13703;17234	1394	1415	2950	2950					-0.029102994136451343
AGGPGPEWR	9	Unmodified	_AGGPGPEWR_					0	0	0			REV__ENST00000263377.6_1_19:15347909-15347945:-|nuORF	REV__ENST00000263377.6_1_19:15347909-15347945:-|nuORF	MSMS	HCT116MG_D190212_S4	4	463.7259521484375	2	463.727584	925.440614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.882	1	17.707	17.207	18.207	-0.17501								0	0	0	0.56943	1	5964	5964		25.399	4.9457	1		+		2966	14652	1395	1416	2951	2951					-0.025088255936225323
AGGQGRPV	8	Unmodified	_AGGQGRPV_					0	0	0			REV__ENST00000355803.8_1_16:1376254-1376458:+|nuORF	REV__ENST00000355803.8_1_16:1376254-1376458:+|nuORF	MSMS	HCT116MG_D190212_S2	2	371.2023010253906	2	371.203744	740.392936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.615	1	63.493	62.993	63.993	-0.12264								0	0	0	0.8837	1	24655	24655		0.69038	0	1		+		2967	15042	1396	1417	2952	2952					0.012355202061826276
AGGSSTAR	8	Unmodified	_AGGSSTAR_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000433366.6_1_10:75557251-75561274:+|nuORF	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-MSMS	HCT116MG_D190212_S2	2	706.347412109375	1	706.347842	705.340566	0.72081	0.00050915	-0.063117	-4.4582E-05	0.6577	0.00046456	706.3474493371059	37.499	0.46049	37.395	37.18	37.641	-0.10318					15	8	2	0	0	0	0.79062	1	14046	14046		12.532	5.2423	1	73780000			2968	6436	1397	1418	2953	2953					-0.02389062927420582
AGGYDAQY	8	Unmodified	_AGGYDAQY_					0	0	0		nc|ENSG00000172009|P52888-2|THOP1;ENSG00000172009|ENST00000307741|THOP1	nc|ENSG00000172009|P52888-2|THOP1	nc|ENSG00000172009|P52888-2|THOP1	MULTI-MSMS	HCT116MG_D190212_S2	2	844.3477783203125	1	844.347174	843.339897	0.81053	0.00068437	-0.35262	-0.00029773	0.4579	0.00038663	844.3469668570482	24.573	0.31329	24.193	24.03	24.344	-0.38003					11	5	3	0	0	0	0.25164	1	8811	8811		63.563	16.642	1	27163000			2969	5229	1398	1419	2954	2954					-0.08803902367139926
AGHGAGGPG	9	Unmodified	_AGHGAGGPG_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-MSMS	HCT116MG_D190212_S2	2	680.3106689453125	1	680.311063	679.303787	0.38374	0.00026106	-0.70561	-0.00048003	-0.32187	-0.00021897	680.3106909748481	32.762	0.26008	32.55	32.377	32.638	-0.21135					6	4	2	0	0	0	0.63193	1	12145	12145		9.3474	3.587	1	18404000			2970	2968	1399	1420	2955	2955					-0.04869314753329945
AGHQVEEQQP	10	Unmodified	_AGHQVEEQQP_					0	0	0			REV__ENST00000430365.6_1_3:11643369-11685017:-|nuORF	REV__ENST00000430365.6_1_3:11643369-11685017:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	561.7557983398438	2	561.762352	1121.51015	0.36166	0.00020317	-3.0381	-0.0017067	-2.6764	-0.0015035	561.7605914802341	19.308	1.9788	19.368	18.188	20.167	0.05983					62	37	2	0	0	0	0.50387	1	6825	6825		34.932	11.142	1	19813000	+		2971	15579	1400	1421	2956	2956					-0.04574411435510228
AGIFRFWFWHY	11	Unmodified	_AGIFRFWFWHY_					0	0	0		ENSG00000214711|ENST00000403897|CAPN14	ENSG00000214711|ENST00000403897|CAPN14	ENSG00000214711|ENST00000403897|CAPN14	MSMS	HCT116MG_D190212_S4	4	765.3777465820312	2	765.377489	1528.74043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.692	1	31.32	30.82	31.82	-0.37145								0	0	0	0.95521	1	11512	11512		3.5965	0.31518	1				2972	6437	1401	1422	2957	2957					-0.002795333120502619
AGIGRSTAKTP	11	Unmodified	_AGIGRSTAKTP_					0	0	0		ENST00000535538.1_1_7:64466697-64466990:-|nuORF;ENST00000427401.8_1_19:20736627-20748510:-|nuORF;ENST00000599885.1_2_19:21106143-21117778:+|nuORF;ENST00000596476.1_1_19:21106143-21116843:+|nuORF;ENST00000291750.6_1_19:20829180-20844320:-|nuORF;ENST00000394323.2_1_7:64453750-64466990:-|nuORF;ENST00000360204.5_1_19:20959154-20975331:+|nuORF;ENSG00000198039|ENST00000476120|ZNF273	ENST00000535538.1_1_7:64466697-64466990:-|nuORF	ENST00000535538.1_1_7:64466697-64466990:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	529.80126953125	2	529.80128	1057.58801	0.41575	0.00022026	0.18961	0.00010046	0.60536	0.00032072	529.8014160550684	29.999	0.31203	29.642	29.441	29.753	-0.3571					8	5	2	0	0	0	0.70073	1	10859	10859		21.537	2.28	1	2545400			2973	6200	1402	1423	2958	2958					0.06151646220496332
AGIKRPQTVVI	11	Unmodified	_AGIKRPQTVVI_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MSMS	HCT116MG_D190212_S1	1	591.3709716796875	2	591.371872	1180.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.556	1	36.556	36.056	37.056	0								0	0	0	0.95521	1	13630	13630		3.5965	0	1		+		2974	12721	1403	1424	2959	2959					0.14605644593802936
AGKNEGALNK	10	Unmodified	_AGKNEGALNK_					0	0	0			REV__nc|ENSG00000164161|Q96QV1-2|HHIP	REV__nc|ENSG00000164161|Q96QV1-2|HHIP	MULTI-MSMS	HCT116MG_D190212_S1	1	501.27227783203125	2	501.272355	1000.53016	0.4127	0.00020687	0.27594	0.00013832	0.68863	0.00034519	501.27225066213543	15.411	0.15637	15.411	15.327	15.484	0					6	2	3	0	0	0	0.67188	1	5145	5145		22.736	0.98964	1	2007900	+		2975	17190	1404	1425	2960	2960					0.02991384295091848
AGKSNHHC	8	Unmodified	_AGKSNHHC_					0	0	0		ENST00000551592.5_1_12:48474253-48490186:-|nuORF;nc|ENSG00000079387|Q9P0U3-2|SENP1;ENSG00000079387|ENST00000549518|SENP1	ENST00000551592.5_1_12:48474253-48490186:-|nuORF	ENST00000551592.5_1_12:48474253-48490186:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	427.18994140625	2	427.190311	852.366069	-0.04142	-1.7694E-05	-0.19739	-8.4323E-05	-0.23881	-0.00010202	427.19002427925767	41.117	0.30975	41.049	40.83	41.14	-0.068199					7	5	2	0	0	0	0.8506	1	15533	15533		5.2307	0	1	30033000			2976	1380	1405	1426	2961	2961					-0.06601911676648342
AGLCEEQLNQ	10	Unmodified	_AGLCEEQLNQ_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	HCT116MG_D190212_S1	1	552.751953125	2	552.753138	1103.49172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.378	1	17.378	16.878	17.878	0								0	0	0	0.78574	1	5911	5911		30.637	13.524	1				2977	5492	1406	1427	2962	2962					-0.05588289401748625
AGLDHGPA	8	Unmodified	_AGLDHGPA_					0	0	0			REV__ENST00000521731.1_1_8:28108019-28196754:-|nuORF	REV__ENST00000521731.1_1_8:28108019-28196754:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	737.3583984375	1	737.357679	736.350402	0.19902	0.00014675	0.74505	0.00054937	0.94407	0.00069612	737.3582328370303	17.803	0.31239	17.884	17.69	18.002	0.081358					8	5	2	0	0	0	0.62424	1	6009	6009		30.225	7.0764	1	2438700	+		2978	16243	1407	1428	2963	2963					-0.028318749220488826
AGLDHGPA	8	Unmodified	_AGLDHGPA_					0	0	0			REV__ENST00000521731.1_1_8:28108019-28196754:-|nuORF	REV__ENST00000521731.1_1_8:28108019-28196754:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	737.3584594726562	1	737.357679	736.350402	0.64782	0.00047767	0.29353	0.00021644	0.94135	0.00069411	737.3578784804803	17.941	0.36397	17.766	17.584	17.948	-0.17501					9	6	2	0	0	0	0.62424	1	6015	6015		30.225	5.5509	1	1801700	+		2979	16243	1407	1428	2964	2964					-0.028318749220488826
AGLGDHAPGA	10	Unmodified	_AGLGDHAPGA_					0	0	0		GRIK5|p.F603Lfs*55|1|0.22|ENSG00000105737|chr19:42021366-42021367|-/C|frameshift_variant	GRIK5|p.F603Lfs*55|1|0.22|ENSG00000105737|chr19:42021366-42021367|-/C|frameshift_variant	GRIK5|p.F603Lfs*55|1|0.22|ENSG00000105737|chr19:42021366-42021367|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	433.2123107910156	2	433.211766	864.40898	0.2128	9.219E-05	-0.087211	-3.7781E-05	0.12559	5.4409E-05	433.21169414058477	19.708	0.45803	19.515	19.278	19.736	-0.19367					16	8	3	0	0	0	0.51573	1	6680	6680		34.102	3.4659	1	10271000			2980	9199	1408	1429	2965	2965					-0.028648183475752376
AGLGDHAPGA	10	Unmodified	_AGLGDHAPGA_					0	0	0		GRIK5|p.F603Lfs*55|1|0.22|ENSG00000105737|chr19:42021366-42021367|-/C|frameshift_variant	GRIK5|p.F603Lfs*55|1|0.22|ENSG00000105737|chr19:42021366-42021367|-/C|frameshift_variant	GRIK5|p.F603Lfs*55|1|0.22|ENSG00000105737|chr19:42021366-42021367|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	865.4174194335938	1	865.416256	864.40898	0.74383	0.00064373	0.32502	0.00028128	1.0689	0.000925	865.4163376842739	19.748	0.3541	19.554	19.33	19.684	-0.19367					13	6	3	0	0	0	0.48679	1	6687	6687		36.127	3.8215	1	3975200			2981	9199	1408	1429	2966	2966					-0.028648183475752376
AGLGDHAPGA	10	Unmodified	_AGLGDHAPGA_					0	0	0		GRIK5|p.F603Lfs*55|1|0.22|ENSG00000105737|chr19:42021366-42021367|-/C|frameshift_variant	GRIK5|p.F603Lfs*55|1|0.22|ENSG00000105737|chr19:42021366-42021367|-/C|frameshift_variant	GRIK5|p.F603Lfs*55|1|0.22|ENSG00000105737|chr19:42021366-42021367|-/C|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	865.416256	864.40898	0.74288	0.0006429	-0.41594	-0.00035996	0.32694	0.00028294	865.415808915747	19.959	0.41444	19.584	19.403	19.817	-0.37503	0.0096695	-0.00056846	NaN	36.127	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4688000			2982	9199	1408	1429							-0.028648183475752376
AGLGWEVDL	9	Unmodified	_AGLGWEVDL_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MSMS	HCT116MG_D190212_S2	2	480.2452392578125	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.504	1	24.124	23.624	24.624	-0.38003								0	0	0	0.76611	1	8783	8783		14.582	0	1				2983	5990	1409	1430	2967	2967					-0.004902078564896328
AGLKRDKRRN	10	Unmodified	_AGLKRDKRRN_					0	0	0			REV__ENST00000483208.5_2_15:42646603-42694336:+|nuORF	REV__ENST00000483208.5_2_15:42646603-42694336:+|nuORF	MSMS	HCT116MG_D190212_S4	4	607.36572265625	2	607.365444	1212.71634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.893	1	41.516	41.016	42.016	-0.37637								0	0	0	0.96291	1	15376	15376		1.8442	0	1		+		2984	10089	1410	1431	2968	2968					0.11848626254254668
AGLQPPDS	8	Unmodified	_AGLQPPDS_					0	0	0		ENST00000495448.5_1_9:130687427-130688256:-|nuORF;ENST00000464108.5_1_9:130687427-130689571:-|nuORF;ENST00000490773.5_1_9:130687427-130690958:-|nuORF;ENST00000498783.5_1_9:130687427-130690958:-|nuORF	ENST00000495448.5_1_9:130687427-130688256:-|nuORF	ENST00000495448.5_1_9:130687427-130688256:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	392.6953125	2	392.695418	783.376283	-0.1674	-6.5739E-05	0.026461	1.0391E-05	-0.14094	-5.5347E-05	392.69539173919003	16.736	0.41619	16.82	16.6	17.016	0.084467					10	7	2	0	0	0	0.84759	1	5588	5588		5.7604	0.52976	1	2043200			2985	8079	1411	1432	2969	2969					-0.024070254704270155
AGLQPPDS	8	Unmodified	_AGLQPPDS_					0	0	0		ENST00000495448.5_1_9:130687427-130688256:-|nuORF;ENST00000464108.5_1_9:130687427-130689571:-|nuORF;ENST00000490773.5_1_9:130687427-130690958:-|nuORF;ENST00000498783.5_1_9:130687427-130690958:-|nuORF	ENST00000495448.5_1_9:130687427-130688256:-|nuORF	ENST00000495448.5_1_9:130687427-130688256:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	392.69537353515625	2	392.695418	783.376283	-0.43023	-0.00016895	0.026822	1.0533E-05	-0.40341	-0.00015842	392.69538408325894	16.852	0.25972	16.686	16.504	16.763	-0.16664					8	4	2	0	0	0	0.84759	1	5558	5558		5.7604	1.0044	1	1473100			2986	8079	1411	1432	2970	2970					-0.024070254704270155
AGLSPEWAMW	10	Unmodified	_AGLSPEWAMW_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-SECPEP	HCT116MG_D190212_S1	1	573.781005859375	2	574.265684	1146.51682	0.26881	0.00015437	-1.7068	-0.00098015	-1.438	-0.00082578	574.264709413784	19.105	0.20831	19.105	18.975	19.183	0					5	3	2	0	0	0	0.3029	1	6570	6570		10.824	9.1713	1	2345400	+		2987	17259	1412	1433	2971	2971					-0.05058189808528368
AGLSTALK	8	Unmodified	_AGLSTALK_					0	0	0			REV__ENST00000536971.1_1_12:7090970-7125761:-|nuORF	REV__ENST00000536971.1_1_12:7090970-7125761:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	380.1888427734375	2	380.731803	759.449054	-0.09853	-3.7514E-05	0.16801	6.3966E-05	0.069478	2.6453E-05	380.7317588535686	23.76	0.26032	23.377	23.195	23.456	-0.38324					7	4	2	0	0	0	0.33021	1	8448	8448		2.5775	0	1	21752000	+		2988	11435	1413	1434	2972	2972					0.059707283229954555
AGLTAAAY	8	Unmodified	_AGLTAAAY_					0	0	0		ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENSG00000174886|ENST00000308961|NDUFA11	ENSG00000174886|ENST00000308961|NDUFA11	MULTI-MSMS	HCT116MG_D190212_S3	3	369.19464111328125	2	369.195054	736.375555	-0.19406	-7.1645E-05	-0.075431	-2.7849E-05	-0.26949	-9.9494E-05	369.19492276965116	24.035	0.26058	23.973	23.843	24.103	-0.061449					6	4	2	0	0	0	0.73076	1	8531	8531		19.439	0	1	2236900			2989	5351	1414	1435	2973	2973					-0.003178201194941721
AGLTLATH	8	Unmodified	_AGLTLATH_					0	0	0			REV__IFITM5|p.P29L|1|0.5|ENSG00000206013|chr11:299405-299405|G/A|missense_variant	REV__IFITM5|p.P29L|1|0.5|ENSG00000206013|chr11:299405-299405|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	392.2215881347656	2	392.221603	782.428653	0.072225	2.8328E-05	-0.039584	-1.5526E-05	0.032641	1.2803E-05	392.22153681055335	20.982	0.73036	20.599	20.18	20.91	-0.38288					20	13	2	0	0	0	0.50777	1	7359	7359		40.449	0	1	8297600	+		2990	14239	1415	1436	2974	2974					0.028735576631788717
AGLTLATH	8	Unmodified	_AGLTLATH_					0	0	0			REV__IFITM5|p.P29L|1|0.5|ENSG00000206013|chr11:299405-299405|G/A|missense_variant	REV__IFITM5|p.P29L|1|0.5|ENSG00000206013|chr11:299405-299405|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	392.2215270996094	2	392.221603	782.428653	-0.020469	-8.0283E-06	0.18788	7.3691E-05	0.16741	6.5663E-05	392.221544126522	21.811	0.77934	21.426	20.908	21.687	-0.38503					29	14	3	0	0	0	0.5791	1	7670	7670		34.187	0.084896	1	15458000	+		2991	14239	1415	1436	2975	2975					0.028735576631788717
AGLYVRLDSL	10	Unmodified	_AGLYVRLDSL_					0	0	0			REV__ENST00000488788.2_1_20:629360-656142:-|nuORF	REV__ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	553.8137817382812	2	553.813856	1105.61316	0.417	0.00023094	-0.026899	-1.4897E-05	0.3901	0.00021604	553.8135954752827	43.564	0.22108	43.189	43.046	43.267	-0.37433					7	4	2	0	0	0	0.64004	1	16047	16047		25.399	0.51775	1	5332400	+		2992	14440	1416	1437	2976	2976					0.06457701023100526
AGNHDVRTP	9	Unmodified	_AGNHDVRTP_					0	0	0			REV__ADAMTS10|p.A70Pfs*20|1|0.07|ENSG00000142303|chr19:8605239-8605239|C/-|frameshift_variant	REV__ADAMTS10|p.A70Pfs*20|1|0.07|ENSG00000142303|chr19:8605239-8605239|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	483.7421875	2	483.741222	965.467892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.372	1	34.078	33.578	34.578	-0.29419								0	0	0	0.49326	1	12649	12649		29.082	0.59474	1		+		2993	9854	1417	1438	2977	2977					-0.01622342053246939
AGNPQDTRLP	10	Unmodified	_AGNPQDTRLP_					0	0	0		ADAMTS4|p.R797P|1|0.37|ENSG00000158859|chr1:161191262-161191262|C/G|missense_variant	ADAMTS4|p.R797P|1|0.37|ENSG00000158859|chr1:161191262-161191262|C/G|missense_variant	ADAMTS4|p.R797P|1|0.37|ENSG00000158859|chr1:161191262-161191262|C/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	534.7495727539062	2	534.775262	1067.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.465	1	15.138	14.638	15.638	-0.32684								0	0	0	0.92272	1	5140	5140		10.824	4.1008	1				2994	48	1418	1439	2978	2978					0.004904828067537892
AGNRHIKFWYL	11	Unmodified	_AGNRHIKFWYL_					0	0	0		ENST00000515164.1_1_15:42103000-42104860:+|nuORF;nc|ENSG00000137802|O60336-5|MAPKBP1;ENST00000502292.5_1_15:42067473-42104860:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1	ENST00000515164.1_1_15:42103000-42104860:+|nuORF	ENST00000515164.1_1_15:42103000-42104860:+|nuORF	MSMS	HCT116MG_D190212_S1	1	702.8816528320312	2	702.880396	1403.74624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.679	1	39.679	39.179	40.179	0								0	0	0	0.9465	1	14892	14892		8.1555	1.9497	1				2995	3501	1419	1440	2979	2979					0.060515651996183806
AGPADTVYSLP	11	Unmodified	_AGPADTVYSLP_					0	0	0			REV__SATB2|p.D136G|1|0.29|ENSG00000119042|chr2:199381760-199381760|T/C|missense_variant	REV__SATB2|p.D136G|1|0.29|ENSG00000119042|chr2:199381760-199381760|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	545.7406005859375	2	545.774396	1089.53424	0.40638	0.00022179	-0.93956	-0.00051279	-0.53318	-0.000291	545.7737876010484	19.04	0.46808	19.109	18.979	19.447	0.069159					13	8	3	0	0	0	0.3453	1	6549	6549		18.146	0	1	16837000	+		2996	17493	1420	1441	2980	2980					-0.006945710018726459
AGPAGPAGPR	10	Unmodified	_AGPAGPAGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	425.7301940917969	2	425.730126	849.4457	-0.19082	-8.1239E-05	0.24258	0.00010327	0.051756	2.2034E-05	425.7301342275976	17.464	0.57247	17.546	17.325	17.898	0.081358					14	10	2	0	0	0	0.037761	1	5858	5858		96.285	21.862	1	5562200			2997	4715	1421	1442	2981	2981					0.014954782689983404
AGPAGPAGPR	10	Unmodified	_AGPAGPAGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	426.2317810058594	2	425.730126	849.4457	-0.074731	-3.1815E-05	0.23136	9.8499E-05	0.15663	6.6684E-05	425.730135400508	17.729	0.4154	17.554	17.324	17.74	-0.17501					14	7	3	0	0	0	0.02258	1	5893	5893		115.69	19.407	1	3760800			2998	4715	1421	1442	2982	2982					0.014954782689983404
AGPAPGYSR	9	Unmodified	_AGPAPGYSR_					0	0	0			REV__nc|ENSG00000106305|Q13155-2|AIMP2	REV__nc|ENSG00000106305|Q13155-2|AIMP2	MSMS	HCT116MG_D190212_S4	4	438.22119140625	2	438.222134	874.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.029	1	21.801	21.301	22.301	-0.22777								0	0	0	0.56943	1	7640	7640		25.399	4.9457	1		+		2999	11293	1422	1443	2983	2983					-0.012522279679046733
AGPCSWAAAGP	11	Unmodified	_AGPCSWAAAGP_					0	0	0		ENST00000533277.5_1_11:66610899-66611226:+|nuORF	ENST00000533277.5_1_11:66610899-66611226:+|nuORF	ENST00000533277.5_1_11:66610899-66611226:+|nuORF	MSMS	HCT116MG_D190212_S1	1	494.2226257324219	2	494.221277	986.428001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.741	1	16.741	16.241	17.241	0								0	0	0	0.93374	1	5654	5654		14.838	1.3304	1				3000	8646	1423	1444	2984	2984					-0.06575605048180932
AGPDPPRASSD	11	Unmodified	_AGPDPPRASSD_					0	0	0			REV__ENST00000374897.2_1_6:32796530-32796803:-|nuORF	REV__ENST00000374897.2_1_6:32796530-32796803:-|nuORF	MSMS	HCT116MG_D190212_S3	3	535.2513427734375	2	535.249077	1068.4836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.622	1	22.603	22.103	23.103	-0.018869								0	0	0	0.94012	1	7946	7946		11.495	1.4208	1		+		3001	15208	1424	1445	2985	2985					-0.047901003268407294
AGPEAEARQLP	11	Unmodified	_AGPEAEARQLP_					0	0	0			REV__ENSG00000206418|ENST00000649141|RAB12	REV__ENSG00000206418|ENST00000649141|RAB12	MSMS	HCT116MG_D190212_S1	1	569.7946166992188	2	569.796195	1137.57784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.065	1	17.065	16.565	17.565	0								0	0	0	0.94924	1	5785	5785		6.7232	0	1		+		3002	14242	1425	1446	2986	2986					0.01455038495282679
AGPEGKVGPA	10	Unmodified	_AGPEGKVGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S1	1	882.468505859375	1	882.467958	881.460681	0.5572	0.00049171	0.039931	3.5237E-05	0.59713	0.00052695	882.4679106651131	25.261	0.20829	25.261	25.144	25.353	0					6	3	2	0	0	0	0.060393	1	9094	9094		81.89	3.1622	1	6055500	+		3003	13018	1426	1447	2987	2987					0.015209253463240202
AGPEGKVGPA	10	Unmodified	_AGPEGKVGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	441.7377624511719	2	441.737617	881.460681	0.24824	0.00010966	0.48531	0.00021438	0.73355	0.00032404	441.7377529475121	25.454	0.67661	25.348	25.048	25.724	-0.10618					15	12	2	0	0	0	0.20843	1	9090	9090		58.679	6.4105	1	12304000	+		3004	13018	1426	1447	2988	2988					0.015209253463240202
AGPEGKVGPA	10	Unmodified	_AGPEGKVGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	441.73760986328125	2	441.737617	881.460681	0.37297	0.00016475	0.1288	5.6897E-05	0.50177	0.00022165	441.7375639518547	25.576	0.6243	25.295	24.953	25.578	-0.28039					18	11	3	0	0	0	0.13038	1	9074	9074		68.081	6.7232	1	14224000	+		3005	13018	1426	1447	2989	2989					0.015209253463240202
AGPEGKVGPA	10	Unmodified	_AGPEGKVGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	441.737617	881.460681	0.035364	1.5622E-05	1.4877	0.00065718	1.5231	0.0006728	441.738353215406	25.655	0.41647	25.286	24.978	25.394	-0.36914	-0.024008	0.00089458	NaN	68.081	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6967300	+		3006	13018	1426	1447							0.015209253463240202
AGPEGKVGPA	10	Unmodified	_AGPEGKVGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	441.737617	881.460681	0.24824	0.00010966	0.48531	0.00021438	0.73355	0.00032404	441.7377529475121	25.454	0.67661	25.348	25.048	25.724	-0.10618	0.038484	8.9805E-06	NaN	68.081	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12304000	+		3007	13018	1426	1447							0.015209253463240202
AGPEGKVGPA	10	Unmodified	_AGPEGKVGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	441.737617	881.460681	0.37297	0.00016475	0.1288	5.6897E-05	0.50177	0.00022165	441.7375639518547	25.576	0.6243	25.295	24.953	25.578	-0.28039	-0.014476	-0.00030598	NaN	68.081	18	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14224000	+		3008	13018	1426	1447							0.015209253463240202
AGPEGKVGPAG	11	Unmodified	_AGPEGKVGPAG_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	939.4906005859375	1	939.489421	938.482145	0.81264	0.00076346	-0.01693	-1.5905E-05	0.79571	0.00074756	939.4896043108625	24.57	0.20739	24.302	24.186	24.393	-0.26881					6	3	2	0	0	0	0.25546	1	8699	8699		69.105	12.928	1	1615100	+		3009	13018	1427	1448	2990	2990					0.010443103750503724
AGPGEPEQGP	10	Unmodified	_AGPGEPEQGP_					0	0	0			REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	MULTI-SECPEP	HCT116MG_D190212_S4	4	470.2484436035156	2	469.714339	937.414125	0.1388	6.5196E-05	0.11292	5.3041E-05	0.25172	0.00011824	469.7142482204321	20.625	1.1906	20.423	19.525	20.716	-0.20133					59	22	4	0	0	0	0.27231	1	6781	6781		11.64	0	1	25880000	+		3010	17214	1428	1449	2991	2991					-0.05708559275615244
AGPGERPAGQ	10	Unmodified	_AGPGERPAGQ_					0	0	0			REV__ENST00000466256.6_1_1:17066814-17263353:+|nuORF	REV__ENST00000466256.6_1_1:17066814-17263353:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	470.2359619140625	2	470.235773	938.456993	0.2255	0.00010604	-0.0696	-3.2728E-05	0.1559	7.3311E-05	470.2356741597435	15.189	0.7804	15.273	14.986	15.767	0.083271					32	14	4	0	0	0	0.16489	1	4931	4931		62.573	4.8507	1	25771000	+		3011	15827	1429	1450	2992	2992					-0.014697444275270755
AGPGPEGPEGA	11	Unmodified	_AGPGPEGPEGA_					0	0	0		ENST00000502100.2_1_5:25190936-25302336:+|nuORF	ENST00000502100.2_1_5:25190936-25302336:+|nuORF	ENST00000502100.2_1_5:25190936-25302336:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	470.2482604980469	2	469.714339	937.414125	0.22005	0.00010336	-0.038405	-1.804E-05	0.18164	8.532E-05	469.7142171679035	20.674	0.84117	20.294	19.761	20.602	-0.37949					33	15	3	0	0	0	0.32355	1	7116	7116		17.113	8.3675	1	14798000			3012	8425	1430	1451	2993	2993					-0.05708559275615244
AGPKDRGPQ	9	Unmodified	_AGPKDRGPQ_					0	0	0			REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	463.2463073730469	2	463.246141	924.477728	0.10119	4.6875E-05	0.01502	6.9579E-06	0.11621	5.3833E-05	463.2461316904218	17.738	0.26033	17.82	17.69	17.95	0.081358					8	4	2	0	0	0	0.43775	1	6028	6028		20.454	2.3073	1	5199700	+		3013	12032	1431	1452	2994	2994					0.012468459521414843
AGPKDRGPQP	10	Unmodified	_AGPKDRGPQP_					0	0	0			REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	511.7725830078125	2	511.772522	1021.53049	0.15664	8.0163E-05	0.091211	4.6679E-05	0.24785	0.00012684	511.7725126091703	19.612	0.52095	19.672	19.386	19.907	0.05983					22	9	3	0	0	0	0.19283	1	6738	6738		60.074	16.092	1	26844000	+		3014	12032	1432	1453	2995	2995					0.020588040149505105
AGPKDRGPQP	10	Unmodified	_AGPKDRGPQP_					0	0	0			REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	511.2378234863281	2	511.772522	1021.53049	0.15664	8.0163E-05	0.091211	4.6679E-05	0.24785	0.00012684	511.7725126091703	19.612	0.52095	19.672	19.386	19.907	0.05983					22	9	3	0	0	0	0.23155	1	6771	6771		43.772	16.549	1	26844000	+		3015	12032	1432	1453	2996	2996					0.020588040149505105
AGPKDRGPQP	10	Unmodified	_AGPKDRGPQP_					0	0	0			REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	511.7726135253906	2	511.772522	1021.53049	0.21172	0.00010835	0.15389	7.8757E-05	0.36561	0.00018711	511.7725233013642	19.853	0.71795	19.66	19.33	20.048	-0.19368					28	13	4	0	0	0	0.33238	1	6740	6740		47.594	7.6447	1	19580000	+		3016	12032	1432	1453	2997	2997					0.020588040149505105
AGPKDRGPQP	10	Unmodified	_AGPKDRGPQP_					0	0	0			REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	511.4715576171875	2	511.772522	1021.53049	0.21172	0.00010835	0.15389	7.8757E-05	0.36561	0.00018711	511.7725233013642	19.853	0.71795	19.66	19.33	20.048	-0.19368					28	13	4	0	0	0	0.2568	1	6772	6772		32.786	22.635	1	19580000	+		3017	12032	1432	1453	2998	2998					0.020588040149505105
AGPKDRGPQP	10	Unmodified	_AGPKDRGPQP_					0	0	0			REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	REV__MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	511.772522	1021.53049	0.32224	0.00016491	0.0015303	7.8315E-07	0.32377	0.0001657	511.7725202827842	19.783	0.26139	19.783	19.6	19.861	0	0.029842	-0.00013779	NaN	60.074	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3175400	+		3018	12032	1432	1453							0.020588040149505105
AGPLDGTYYLP	11	Unmodified	_AGPLDGTYYLP_					0	0	0		ENSG00000228672|ENST00000434752|PROB1	ENSG00000228672|ENST00000434752|PROB1	ENSG00000228672|ENST00000434752|PROB1	MSMS	HCT116MG_D190212_S2	2	583.8002319335938	2	583.790047	1165.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.688	1	33.495	32.995	33.995	-0.19297								0	0	0	0.94284	1	12509	12509		10.074	0.6908	1				3019	6493	1433	1454	2999	2999					-0.010619979677585434
AGPLQRQKQSP	11	Unmodified	_AGPLQRQKQSP_					0	0	0		ENST00000394636.8_1_16:54964782-54965211:+|nuORF	ENST00000394636.8_1_16:54964782-54965211:+|nuORF	ENST00000394636.8_1_16:54964782-54965211:+|nuORF	MSMS	HCT116MG_D190212_S1	1	605.3397827148438	2	605.338561	1208.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.555	1	19.555	19.055	20.055	0								0	0	0	0.95023	1	6788	6788		6.2058	0.47393	1				3020	7636	1434	1455	3000	3000					0.06658409031888368
AGPPEGGPA	9	Unmodified	_AGPPEGGPA_					0	0	0			REV__ENSG00000144119|ENST00000272520|C1QL2	REV__ENSG00000144119|ENST00000272520|C1QL2	MSMS	HCT116MG_D190212_S3	3	376.68212890625	2	376.682311	751.350068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.797	1	18.866	18.366	19.366	0.069159								0	0	0	0.54994	1	6406	6406		26.341	1.6674	1		+		3021	12415	1435	1456	3001	3001					-0.03555294641898854
AGPPPLRDPQ	10	Unmodified	_AGPPPLRDPQ_					0	0	0			REV__ENST00000392401.3_1_6:132713415-132722602:-|nuORF	REV__ENST00000392401.3_1_6:132713415-132722602:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	524.2952270507812	2	524.282723	1046.55089	-0.053381	-2.7987E-05	-1.0344	-0.00054231	-1.0878	-0.00057029	524.2822126765843	43.144	0.4115	43.071	42.891	43.303	-0.073376					9	7	2	0	0	0	0.28233	1	16405	16405		16.149	16.149	1	10932000	+		3022	15311	1436	1457	3002	3002					0.029479746747256286
AGPPQADY	8	Unmodified	_AGPPQADY_					0	0	0			REV__ENSG00000111961|ENST00000367467|SASH1	REV__ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	HCT116MG_D190212_S2	2	818.3689575195312	1	818.367909	817.360633	0.79402	0.0006498	0.071561	5.8563E-05	0.86558	0.00070836	818.3680180994415	21.474	0.25928	21.091	20.91	21.169	-0.38288					6	4	2	0	0	0	0.60268	1	7568	7568		32.117	1.8922	1	15105000	+		3023	11442	1437	1458	3003	3003					-0.05535311987478053
AGPPRQHRPCP	11	Unmodified	_AGPPRQHRPCP_					0	0	0			REV__ENST00000470943.1_1_19:55177267-55178470:+|nuORF	REV__ENST00000470943.1_1_19:55177267-55178470:+|nuORF	MSMS	HCT116MG_D190212_S1	1	608.3130493164062	2	608.311823	1214.60909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.556	1	33.556	33.056	34.056	0								0	0	0	0.95521	1	12422	12422		3.5965	0.31518	1		+		3024	15798	1438	1459	3004	3004					0.010373330483844256
AGPRGEAPPPP	11	Unmodified	_AGPRGEAPPPP_					0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	MULTI-SECPEP	HCT116MG_D190212_S4	4	522.7637939453125	2	523.274898	1044.53524	0.35978	0.00018826	0.01214	6.3528E-06	0.37192	0.00019461	523.2748491175223	19.924	0.82209	19.73	19.486	20.308	-0.19367					19	15	2	0	0	0	0.34771	1	6790	6790		15.847	3.3156	1	1817700			3025	805	1439	1460	3005	3005					0.014756881576886371
AGPRRRPKRGP	11	Unmodified	_AGPRRRPKRGP_					0	0	0			REV__nc|ENSG00000164889|P04920-2|SLC4A2;REV__SLC4A2|p.E125Rfs*120|1|0.33|ENSG00000164889|chr7:151064677-151064677|G/-|frameshift_variant	REV__nc|ENSG00000164889|P04920-2|SLC4A2	MSMS	HCT116MG_D190212_S1	1	624.3804321289062	2	624.381429	1246.7483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.015	1	38.015	37.515	38.515	0								0	0	0	0.95925	1	14220	14220		1.4819	0.15237	1				3026	13028;17528	1440	1461	3006	3006					0.13480038728062027
AGPRVIEQTIR	11	Unmodified	_AGPRVIEQTIR_					0	0	0		tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1	tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1	tr|U7SZV2|U7SZV2_FUSNUAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=accDPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	620.6941528320312	2	620.362036	1238.70952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.91	1	15.576	15.076	16.076	-0.33451								0	0	0	0.95196	1	5319	5319		5.2969	2.0156	1				3027	18537	1441	1462	3007	3007					0.09971268583035453
AGPSLRGESNP	11	Unmodified	_AGPSLRGESNP_					0	0	0			REV__ENST00000579303.5_2_17:21030382-21081576:+|nuORF	REV__ENST00000579303.5_2_17:21030382-21081576:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	542.791015625	2	542.772719	1083.53089	0.37606	0.00020412	2.2526	0.0012227	2.6287	0.0014268	542.7737527266366	28.077	0.15628	27.889	27.777	27.933	-0.18847					4	2	2	0	0	0	0.3177	1	10147	10147		20.415	0	1	1498600	+		3028	16617	1442	1463	3008	3008					-0.007538210558550418
AGPSTAVQVHD	11	Unmodified	_AGPSTAVQVHD_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	HCT116MG_D190212_S4	4	541.2674560546875	2	541.26727	1080.51999	0.40945	0.00022162	0.5091	0.00027556	0.91855	0.00049718	541.2677222826262	22.405	0.83279	22.177	21.78	22.613	-0.22777					17	15	2	0	0	0	0.63759	1	7797	7797		31.268	7.4786	1	1356500			3029	6104	1443	1464	3009	3009					-0.01705223430121805
AGPSTQNGAPQ	11	Unmodified	_AGPSTQNGAPQ_					0	0	0			REV__nc|ENSG00000137868|Q9BX79-3|STRA6	REV__nc|ENSG00000137868|Q9BX79-3|STRA6	MSMS	HCT116MG_D190212_S4	4	514.0796508789062	2	514.243795	1026.47304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.352	1	16.189	15.689	16.689	-0.16364								0	0	0	0.88801	1	5346	5346		21.537	1.0834	1		+		3030	12197	1444	1465	3010	3010					-0.03914082981282263
AGPTALGPR	9	Unmodified	_AGPTALGPR_					0	0	0		ENSG00000198455|ENST00000374888|ZXDB	ENSG00000198455|ENST00000374888|ZXDB	ENSG00000198455|ENST00000374888|ZXDB	MULTI-MSMS	HCT116MG_D190212_S3	3	420.2401428222656	2	420.240327	838.466101	0.1793	7.5348E-05	-0.32714	-0.00013748	-0.14784	-6.2129E-05	420.2401994369242	25.092	0.31291	24.986	24.787	25.1	-0.10618					7	5	2	0	0	0	0.33687	1	8952	8952		26.884	3.7352	1	3749700			3031	6232	1445	1466	3011	3011					0.040406489287988734
AGPTALGPR	9	Unmodified	_AGPTALGPR_					0	0	0		ENSG00000198455|ENST00000374888|ZXDB	ENSG00000198455|ENST00000374888|ZXDB	ENSG00000198455|ENST00000374888|ZXDB	MSMS	HCT116MG_D190212_S4	4	420.24017333984375	2	420.240327	838.466101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.395	1	25.115	24.615	25.615	-0.27958								0	0	0	0.53872	1	8997	8997		26.884	3.7352	1				3032	6232	1445	1466	3012	3012					0.040406489287988734
AGPTGGLHG	9	Unmodified	_AGPTGGLHG_					0	0	0		ENST00000492950.5_3_1:161129274-161129415:+|nuORF	ENST00000492950.5_3_1:161129274-161129415:+|nuORF	ENST00000492950.5_3_1:161129274-161129415:+|nuORF	MSMS	HCT116MG_D190212_S2	2	383.6953430175781	2	383.695752	765.376952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.199	1	14.873	14.373	15.373	-0.32684								0	0	0	0.71969	1	5033	5033		18.135	3.5533	1				3033	8351	1446	1467	3013	3013					-0.01512186030720386
AGPTGPLG	8	Unmodified	_AGPTGPLG_					0	0	0			REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	669.357177734375	1	669.356616	668.34934	1.0341	0.00069218	1.9556	0.001309	2.9897	0.0020012	669.3563726269782	28.699	0.57272	28.493	28.229	28.802	-0.20593					20	10	3	0	0	0	0.052199	1	10394	10394		120.86	0	1	15592000	+		3034	10240	1447	1468	3014	3014					0.0018991070905940433
AGPTGPLG	8	Unmodified	_AGPTGPLG_					0	0	0			REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	669.3576049804688	1	669.356616	668.34934	0.63546	0.00042535	0.25117	0.00016812	0.88663	0.00059347	669.3566423371061	28.837	0.41545	28.496	28.314	28.73	-0.34059					12	7	2	0	0	0	0.03907	1	10373	10373		136.08	0	1	11161000	+		3035	10240	1447	1468	3015	3015					0.0018991070905940433
AGPTGPLG	8	Unmodified	_AGPTGPLG_					0	0	0			REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	669.356616	668.34934	0.63546	0.00042535	0.25117	0.00016812	0.88663	0.00059347	669.3566423371061	28.837	0.41545	28.496	28.314	28.73	-0.34059	0.0015596	-2.7191E-05	NaN	136.08	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11161000	+		3036	10240	1447	1468							0.0018991070905940433
AGPTPPKA	8	Unmodified	_AGPTPPKA_					0	0	0			REV__SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant	REV__SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	369.7108459472656	2	369.710871	737.407189	-0.18555	-6.8601E-05	0.3194	0.00011808	0.13384	4.9484E-05	369.7108926164625	25.842	0.25874	25.473	25.291	25.55	-0.36914					7	4	2	0	0	0	0.84759	1	9330	9330		5.7604	0.52976	1	20747000	+		3037	10702	1448	1469	3016	3016					0.02798172634470575
AGPVGINPA	9	Unmodified	_AGPVGINPA_					0	0	0		nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	MSMS	HCT116MG_D190212_S3	3	398.221435546875	2	398.221603	794.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.484	1	21.502	21.002	22.002	0.018446								0	0	0	0.50556	1	7489	7489		28.487	2.1456	1				3038	9673	1449	1470	3017	3017					0.023215576631855583
AGPWPEWGGW	10	Unmodified	_AGPWPEWGGW_					0	0	0		ENST00000258770.7_1_7:45139767-45139851:-|nuORF	ENST00000258770.7_1_7:45139767-45139851:-|nuORF	ENST00000258770.7_1_7:45139767-45139851:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	572.246826171875	2	571.756341	1141.49813	0.71764	0.00041031	-2.3489	-0.001343	-1.6312	-0.00093267	571.7552428369517	29.615	0.30998	29.314	29.134	29.444	-0.30095					7	5	2	0	0	0	0.30961	1	10790	10790		4.3292	0	1	36297000			3039	6833	1450	1471	3018	3018					-0.06695983388044624
AGQKVGTL	8	Unmodified	_AGQKVGTL_					0	0	0		CLIP4|p.N324Kfs*2|1|0.38|ENSG00000115295|chr2:29145311-29145312|-/A|frameshift_variant;nc|ENSG00000115295|Q8N3C7-4|CLIP4;CLIP4|p.D396Ifs*19|3|0.2|ENSG00000115295|chr2:29156367-29156367|A/-|frameshift_variant;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;CLIP4|p.N665Mfs*20|1|0.1|ENSG00000115295|chr2:29181764-29181764|A/-|frameshift_variant;ENSG00000115295|ENST00000320081|CLIP4	CLIP4|p.N324Kfs*2|1|0.38|ENSG00000115295|chr2:29145311-29145312|-/A|frameshift_variant	CLIP4|p.N324Kfs*2|1|0.38|ENSG00000115295|chr2:29145311-29145312|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	773.4523315429688	1	773.451579	772.444303	0.92614	0.00071632	-0.24392	-0.00018866	0.68221	0.00052766	773.4513284862421	21.112	0.20838	20.729	20.598	20.807	-0.38288					5	3	2	0	0	0	0.60268	1	7438	7438		32.117	3.6301	1	16770000			3040	478	1451	1472	3019	3019					0.048978441802432826
AGRNDQEGPA	10	Unmodified	_AGRNDQEGPA_					0	0	0			REV__ITGAD|p.E547D|1|0.39|ENSG00000156886|chr16:31411451-31411451|G/T|missense_variant	REV__ITGAD|p.E547D|1|0.39|ENSG00000156886|chr16:31411451-31411451|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	507.74609375	2	507.733594	1013.45264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.446	1	21.228	20.728	21.728	-0.21832								0	0	0	0.72975	1	7404	7404		36.127	5.4905	1		+		3041	16910	1452	1473	3020	3020					-0.05355253641096169
AGSALQGLLSA	11	Unmodified	_AGSALQGLLSA_					0	0	0		ENST00000232564.7_1_3:179144013-179169272:-|nuORF	ENST00000232564.7_1_3:179144013-179169272:-|nuORF	ENST00000232564.7_1_3:179144013-179169272:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	494.27703857421875	2	494.277106	986.53966	0.20676	0.0001022	-0.035834	-1.7712E-05	0.17093	8.4486E-05	494.2770256035345	40.004	0.31142	39.931	39.79	40.102	-0.072838					9	5	2	0	0	0	0.28711	1	15094	15094		65.474	7.7517	1	22542000			3042	6768	1453	1474	3021	3021					0.04585152580625618
AGSECVGV	8	Unmodified	_AGSECVGV_					0	0	0		ENSG00000125337|ENST00000643607|KIF25	ENSG00000125337|ENST00000643607|KIF25	ENSG00000125337|ENST00000643607|KIF25	MULTI-MSMS	HCT116MG_D190212_S2	2	721.3201904296875	1	721.318516	720.31124	0.85339	0.00061556	1.433	0.0010336	2.2864	0.0016492	721.3192727877292	37.349	0.25797	37.246	37.026	37.284	-0.10318					6	4	2	0	0	0	0.73076	1	14006	14006		19.439	0	1	27556000			3043	2878	1454	1475	3022	3022					-0.06010343267917051
AGSGGAWA	8	Unmodified	_AGSGGAWA_					0	0	0		GSX2|p.G84W|1|0.44|ENSG00000180613|chr4:54100594-54100594|G/T|missense_variant	GSX2|p.G84W|1|0.44|ENSG00000180613|chr4:54100594-54100594|G/T|missense_variant	GSX2|p.G84W|1|0.44|ENSG00000180613|chr4:54100594-54100594|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	676.3050537109375	1	676.304915	675.297639	0.19303	0.00013055	0.39942	0.00027013	0.59245	0.00040068	676.3051003200878	23.294	0.25928	22.908	22.778	23.037	-0.3852					6	4	2	0	0	0	0.6854	1	8318	8318		24.674	6.5389	1	17969000			3044	9202	1455	1476	3023	3023					-0.05299832984860586
AGSGGAWA	8	Unmodified	_AGSGGAWA_					0	0	0		GSX2|p.G84W|1|0.44|ENSG00000180613|chr4:54100594-54100594|G/T|missense_variant	GSX2|p.G84W|1|0.44|ENSG00000180613|chr4:54100594-54100594|G/T|missense_variant	GSX2|p.G84W|1|0.44|ENSG00000180613|chr4:54100594-54100594|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	676.303466796875	1	676.304915	675.297639	0.79321	0.00053645	-0.76688	-0.00051864	0.026337	1.7812E-05	676.3042664917729	22.926	0.25418	22.907	22.797	23.051	-0.018869					6	4	2	0	0	0	0.6854	1	8089	8089		24.674	5.2349	1	4258700			3045	9202	1455	1476	3024	3024					-0.05299832984860586
AGSGKRAPG	9	Unmodified	_AGSGKRAPG_					0	0	0		ENST00000575885.5_1_16:3017440-3017942:+|nuORF	ENST00000575885.5_1_16:3017440-3017942:+|nuORF	ENST00000575885.5_1_16:3017440-3017942:+|nuORF	MSMS	HCT116MG_D190212_S3	3	400.7210388183594	2	400.722301	799.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.902	1	19.95	19.45	20.45	0.048107								0	0	0	0.76641	1	6852	6852		13.508	0	1				3046	8922	1456	1477	3025	3025					0.022311917519459712
AGSLKANG	8	Unmodified	_AGSLKANG_					0	0	0			REV__ENST00000540578.6_1_18:9182415-9235682:+|nuORF	REV__ENST00000540578.6_1_18:9182415-9235682:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	717.3894653320312	1	717.388979	716.381703	1.027	0.00073679	-0.36468	-0.00026162	0.66236	0.00047517	717.3884615150201	17.144	0.26052	16.795	16.665	16.925	-0.34933					6	4	2	0	0	0	0.79834	1	5841	5841		11.64	2.2929	1	8018400	+		3047	16361	1457	1478	3026	3026					0.012166981120458331
AGSNQKIVNAE	11	Unmodified	_AGSNQKIVNAE_					0	0	0			REV__MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	REV__MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	565.7940063476562	2	565.793652	1129.57275	0.46439	0.00026275	0.28205	0.00015958	0.74643	0.00042233	565.7935102528137	16.968	0.31288	16.968	16.733	17.046	0					8	5	3	0	0	0	0.68267	1	5772	5772		26.268	0.86883	1	5517300	+		3048	13471	1458	1479	3027	3027					0.013147346326604747
AGSPGPLK	8	Unmodified	_AGSPGPLK_					0	0	0		nc|ENSG00000242520|P43359|MAGEA5P	REV__nc|ENSG00000130768|Q92485-2|SMPDL3B	REV__nc|ENSG00000130768|Q92485-2|SMPDL3B	MULTI-MSMS	HCT116MG_D190212_S1	1	726.4148559570312	1	726.414465	725.407189	0.88744	0.00064465	-0.14748	-0.00010713	0.73996	0.00053752	726.414379253298	21.016	0.26743	21.016	20.852	21.12	0					6	4	2	0	0	0	0.62424	1	7387	7387		30.225	1.738	1	3601200			3049	11938	1459	1480	3028	3028					0.03350172634475257
AGSYGDDGAP	10	Unmodified	_AGSYGDDGAP_					0	0	0			REV__ENSG00000179930|ENST00000339948|ZNF648	REV__ENSG00000179930|ENST00000339948|ZNF648	MSMS	HCT116MG_D190212_S3	3	455.1815185546875	2	455.182872	908.35119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.37	1	17.451	16.951	17.951	0.081358								0	0	0	0.81484	1	5831	5831		26.884	2.2098	1		+		3050	13648	1460	1481	3029	3029					-0.10665125063655978
AGTAWGASVGP	11	Unmodified	_AGTAWGASVGP_					0	0	0			REV__ENST00000377264.7_2_11:64681608-64684680:-|nuORF	REV__ENST00000377264.7_2_11:64681608-64684680:-|nuORF	MSMS	HCT116MG_D190212_S1	1	487.1874084472656	2	487.240524	972.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.968	1	21.968	21.468	22.468	0								0	0	0	0.86874	1	7755	7755		24.021	0.87215	1		+		3051	15235	1461	1482	3030	3030					-0.020839761419892966
AGTDGETTT	9	Unmodified	_AGTDGETTT_					0	0	0		ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	MULTI-MSMS	HCT116MG_D190212_S3	3	852.3602294921875	1	852.358132	851.350856	1.0707	0.00091263	1.1997	0.0010226	2.2704	0.0019352	852.3589352309883	48.725	0.36083	48.409	48.244	48.605	-0.31596					9	6	2	0	0	0	0.49914	1	18346	18346		16.942	2.3606	1	8660900			3052	2194	1462	1483	3031	3031					-0.08076544783523332
AGTELVNFLSY	11	Unmodified	_AGTELVNFLSY_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S3	3	607.3087158203125	2	607.308603	1212.60265	0.727	0.00044152	-0.24952	-0.00015154	0.47748	0.00028998	607.308352440705	57.608	0.31261	57.334	57.204	57.516	-0.27434					13	5	3	0	0	0	0.032657	1	21900	21900		106.94	42.98	1	11914000			3053	4390	1463	1484	3032	3032					0.004856735780094823
AGTELVNFLSY	11	Unmodified	_AGTELVNFLSY_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	607.308603	1212.60265	0.42781	0.00025981	0.63591	0.00038619	1.0637	0.000646	607.3089140039605	57.282	0.15585	57.282	57.152	57.308	0	-0.019626	0.00077431	NaN	106.94	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12025000			3054	4390	1463	1484							0.004856735780094823
AGTELVNFLSY	11	Unmodified	_AGTELVNFLSY_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	607.308603	1212.60265	0.71277	0.00043287	0.17742	0.00010775	0.89018	0.00054062	607.3087745064021	57.464	0.15624	57.289	57.211	57.367	-0.17494	-0.012602	0.00021742	NaN	106.94	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11481000			3055	4390	1463	1484							0.004856735780094823
AGTERAFDRFK	11	Unmodified	_AGTERAFDRFK_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MSMS	HCT116MG_D190212_S2	2	649.3370361328125	2	649.336018	1296.65748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.107	1	14.78	14.28	15.28	-0.32684								0	0	0	0.95686	1	4996	4996		2.7352	1.0826	1		+		3056	10751	1464	1485	3033	3033					0.021021051692514447
AGTETVLVQV	10	Unmodified	_AGTETVLVQV_					0	0	0			REV__PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant	REV__PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	1015.9205322265625	1	1016.56225	1015.55498	0.90312	0.00091808	-0.68945	-0.00070087	0.21368	0.00021722	1016.5614160073761	45.442	0.20782	45.442	45.295	45.503	0					5	3	2	0	0	0	0.20215	1	17185	17185		52.268	0	1	6941300	+		3057	12257	1465	1486	3034	3034					0.04782019377819324
AGTGSRGG	8	Unmodified	_AGTGSRGG_					0	0	0		ASXL2|p.P778Qfs*21|1|0.48|ENSG00000143970|chr2:25744004-25744004|G/-|frameshift_variant;nc|ENSG00000143970|Q76L83-2|ASXL2;ENSG00000143970|ENST00000435504|ASXL2	ASXL2|p.P778Qfs*21|1|0.48|ENSG00000143970|chr2:25744004-25744004|G/-|frameshift_variant	ASXL2|p.P778Qfs*21|1|0.48|ENSG00000143970|chr2:25744004-25744004|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	662.3226318359375	1	662.321628	661.314351	0.40062	0.00026534	0.024042	1.5924E-05	0.42466	0.00028126	662.3214499419244	35.309	1.1759	35.166	34.932	36.108	-0.14245					51	22	3	0	0	0	0.86564	1	13352	13352		2.5775	0	1	2124899999.9999998			3058	206	1466	1487	3035	3035					-0.029853320988877385
AGTPEVNVDVP	11	Unmodified	_AGTPEVNVDVP_					0	0	0		ENST00000594468.1_1_19:58989018-58989420:+|nuORF	ENST00000594468.1_1_19:58989018-58989420:+|nuORF	ENST00000594468.1_1_19:58989018-58989420:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2775268554688	2	549.277303	1096.54005	0.50391	0.00027679	-1.6492	-0.00090585	-1.1452	-0.00062906	549.2765532048528	33.812	0.20839	33.62	33.482	33.691	-0.19297					8	3	3	0	0	0	0.44062	1	12583	12583		51.415	13.441	1	13753000			3059	9056	1467	1488	3036	3036					-0.0043547249019866285
AGTSMVYERLF	11	Unmodified	_AGTSMVYERLF_					0	0	0			REV__AWAT2|p.D232Efs*45|1|0.07|ENSG00000147160|chrX:70042338-70042339|-/C|frameshift_variant	REV__AWAT2|p.D232Efs*45|1|0.07|ENSG00000147160|chrX:70042338-70042339|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	637.7482299804688	2	637.315906	1272.61726	0.42364	0.00026999	1.9509	0.0012433	2.3745	0.0015133	637.818829951474	32.615	0.26063	32.404	32.221	32.482	-0.21135					6	4	2	0	0	0	0.35938	1	12036	12036		11.495	0	1	6980000	+		3060	10022	1468	1489	3037	3037					-0.008145775455204785
AGVDEAYRQM	10	Unmodified	_AGVDEAYRQM_					0	0	0			REV__CWC25|p.K174Rfs*71|1|0.26|ENSG00000273559|chr17:38810573-38810573|T/-|frameshift_variant	REV__CWC25|p.K174Rfs*71|1|0.26|ENSG00000273559|chr17:38810573-38810573|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	570.2614135742188	2	570.26113	1138.50771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.863	1	32.863	32.363	33.363	0								0	0	0	0.94107	1	12142	12142		6.7232	0.99131	1		+		3061	10314	1469	1490	3038	3038					-0.056005831648462845
AGVDHRVILGN	11	Unmodified	_AGVDHRVILGN_					0	0	0		nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	nc|ENSG00000240065|P28065-2|PSMB9	nc|ENSG00000240065|P28065-2|PSMB9	MULTI-MSMS	HCT116MG_D190212_S2	2	384.8791809082031	3	384.215761	1149.62546	-0.075968	-2.9188E-05	1.3462	0.00051722	1.2702	0.00048803	384.21650144000165	16.617	0.26015	16.275	16.152	16.412	-0.34183					7	4	3	0	0	0	0.70073	1	5579	5579		12.856	0	1	6423100			3062	6538	1470	1491	3039	3039					0.056627374861591306
AGVFAKLW	8	Unmodified	_AGVFAKLW_					0	0	0			REV__NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant	REV__NBEAL2|p.Y1346Tfs*20|1|0.44|ENSG00000160796|chr3:47000132-47000132|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	446.25970458984375	2	446.257988	890.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.089	1	35.704	35.204	36.204	-0.38558								0	0	0	0.8837	1	13193	13193		2.8892	2.0956	1		+		3063	12843	1471	1492	3040	3040					0.051793114566066834
AGVKEPLR	8	Unmodified	_AGVKEPLR_					0	0	0			REV__ENST00000354336.7_1_22:21305412-21305550:+|nuORF	REV__ENST00000354336.7_1_22:21305412-21305550:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	435.263916015625	2	435.263802	868.513051	-0.10253	-4.4625E-05	0.085391	3.7167E-05	-0.017134	-7.458E-06	435.2637806861669	19.485	0.15609	19.485	19.391	19.548	0					4	2	2	0	0	0	0.51336	1	6780	6780		39.957	9.7325	1	2665700	+		3064	15029	1472	1493	3041	3041					0.07353508479957327
AGVRFNQP	8	Unmodified	_AGVRFNQP_					0	0	0			REV__ENST00000262646.11_1_8:61429433-61429637:+|nuORF	REV__ENST00000262646.11_1_8:61429433-61429637:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	444.20928955078125	2	444.737951	887.46135	0.11152	4.9598E-05	-0.082875	-3.6857E-05	0.028648	1.2741E-05	444.73788609114933	18.363	0.36493	18.439	18.205	18.57	0.076334					10	6	2	0	0	0	0.31111	1	6157	6157		10.183	0	1	3889400	+		3065	14641	1473	1494	3042	3042					0.013117647860326542
AGVSDVDY	8	Unmodified	_AGVSDVDY_					0	0	0		ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	MULTI-MSMS	HCT116MG_D190212_S2	2	825.3640747070312	1	825.36249	824.355213	0.9745	0.00080431	0.247	0.00020387	1.2215	0.0010082	825.3626523799421	32.043	0.31099	31.813	31.631	31.942	-0.23009					7	5	2	0	0	0	0.23352	1	11872	11872		67.035	22.628	1	11679000			3066	3605	1474	1495	3043	3043					-0.06399035569950229
AGVSNTVQQVN	11	Unmodified	_AGVSNTVQQVN_					0	0	0			REV__MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant	REV__MYH13|p.K1396Nfs*37|1|0.46|ENSG00000006788|chr17:10312751-10312751|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	558.785888671875	2	558.785827	1115.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.12	1	18.933	18.433	19.433	-0.18674								0	0	0	0.83401	1	6464	6464		28.495	1.2713	1		+		3067	10491	1475	1496	3044	3044					0.003944481156167967
AGWTVSSQEL	10	Unmodified	_AGWTVSSQEL_					0	0	0		ENST00000378887.3_1_19:36486765-36486891:+|nuORF	ENST00000378887.3_1_19:36486765-36486891:+|nuORF	ENST00000378887.3_1_19:36486765-36486891:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	359.8451843261719	3	359.845223	1076.51384	-0.025042	-9.0114E-06	-0.27927	-0.00010049	-0.30431	-0.00010951	359.84516078029145	20.253	0.20874	20.253	20.123	20.331	0					6	3	2	0	0	0	0.78781	1	7098	7098		7.9454	1.315	1	4433200			3068	7546	1476	1497	3045	3045					-0.021357416616638147
AGYCRYQGGHS	11	Unmodified	_AGYCRYQGGHS_					0	0	0			REV__ENST00000391735.3_19:54722514-54745001:-|nuORF	REV__ENST00000391735.3_19:54722514-54745001:-|nuORF	MSMS	HCT116MG_D190212_S2	2	599.7582397460938	2	599.756546	1197.49854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.017	1	15.683	15.183	16.183	-0.33451								0	0	0	0.95273	1	5362	5362		4.897	0.95262	1		+		3069	11260	1477	1498	3046	3046					-0.09230931730485281
AGYKKKFWK	9	Unmodified	_AGYKKKFWK_					0	0	0		ENST00000453682.1_1_X:12863046-12863286:-|nuORF	ENST00000453682.1_1_X:12863046-12863286:-|nuORF	ENST00000453682.1_1_X:12863046-12863286:-|nuORF	MSMS	HCT116MG_D190212_S1	1	385.89434814453125	3	385.89396	1154.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.05	1	10.05	9.5498	10.55	0								0	0	0	0.77008	1	3066	3066		0.26902	0	1				3070	8004	1478	1499	3047	3047					0.08890605364877047
AGYLPLPD	8	Unmodified	_AGYLPLPD_					0	0	0		ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	MSMS	HCT116MG_D190212_S2	2	423.2236328125	2	423.223811	844.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.218	1	28.902	28.402	29.402	-0.31613								0	0	0	0.8837	1	10693	10693		15.768	1.1865	1				3071	4437	1479	1500	3048	3048					0.004630220860917689
AGYNLLTSA	9	Unmodified	_AGYNLLTSA_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	HCT116MG_D190212_S1	1	455.73907470703125	2	455.23745	908.460347	0.12192	5.5504E-05	0.59913	0.00027275	0.72105	0.00032825	455.2376965919649	26.579	0.31218	26.579	26.345	26.657	0					7	5	2	0	0	0	0.47829	1	9624	9624		18.135	1.1927	1	7722900	+		3072	12449	1480	1501	3049	3049					0.00245505626457998
AHAVAGPR	8	Unmodified	_AHAVAGPR_					0	0	0			REV__nc|ENSG00000087116|O95450-2|ADAMTS2	REV__nc|ENSG00000087116|O95450-2|ADAMTS2	MULTI-MSMS	HCT116MG_D190212_S3	3	389.7195739746094	2	389.719562	777.42457	-0.18119	-7.0613E-05	0.19519	7.6069E-05	0.013998	5.4554E-06	389.71960726348647	24.254	0.41618	24.192	23.947	24.363	-0.061449					11	7	2	0	0	0	0.66848	1	8607	8607		26.341	0	1	2404900	+		3073	17084	1481	1502	3050	3050					0.02695512960144697
AHAVAGPR	8	Unmodified	_AHAVAGPR_					0	0	0			REV__nc|ENSG00000087116|O95450-2|ADAMTS2	REV__nc|ENSG00000087116|O95450-2|ADAMTS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	389.719562	777.42457	-0.18119	-7.0613E-05	0.19519	7.6069E-05	0.013998	5.4554E-06	389.71960726348647	24.254	0.41618	24.192	23.947	24.363	-0.061449	-0.035606	1.927E-05	NaN	26.341	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2404900	+		3074	17084	1481	1502							0.02695512960144697
AHAVAGPR	8	Unmodified	_AHAVAGPR_					0	0	0			REV__nc|ENSG00000087116|O95450-2|ADAMTS2	REV__nc|ENSG00000087116|O95450-2|ADAMTS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	389.719562	777.42457	0.24144	9.4095E-05	0.098021	3.8201E-05	0.33946	0.0001323	389.71947332661597	24.532	0.36314	24.263	24.03	24.393	-0.26881	0.035606	-5.6466E-05	NaN	26.341	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2343300	+		3075	17084	1481	1502							0.02695512960144697
AHDPDTYPVTR	11	Unmodified	_AHDPDTYPVTR_					0	0	0			REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1	REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1	MSMS	HCT116MG_D190212_S4	4	636.3032836914062	2	636.304384	1270.59421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.289	1	31.91	31.41	32.41	-0.37818								0	0	0	0.90489	1	11754	11754		19.362	3.2128	1		+		3076	11333	1482	1503	3051	3051					-0.030258803386232103
AHDRGDPDE	9	Unmodified	_AHDRGDPDE_					0	0	0			REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	MSMS	HCT116MG_D190212_S3	3	506.1015625	2	506.209952	1010.40535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.193	1	51.884	51.384	52.384	-0.30927								0	0	0	0.76694	1	19725	19725		11.64	3.047	1		+		3077	14865	1483	1504	3052	3052					-0.09943532912086539
AHKPPGGG	8	Unmodified	_AHKPPGGG_					0	0	0		TNFRSF4|p.D249N|1|0.6|ENSG00000186827|chr1:1211722-1211722|C/T|missense_variant;ENSG00000186827|ENST00000379236|TNFRSF4	TNFRSF4|p.D249N|1|0.6|ENSG00000186827|chr1:1211722-1211722|C/T|missense_variant	TNFRSF4|p.D249N|1|0.6|ENSG00000186827|chr1:1211722-1211722|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	360.69293212890625	2	360.693013	719.371472	-0.027953	-1.0082E-05	0.15512	5.595E-05	0.12717	4.5868E-05	360.69295524216096	15.04	0.2083	15.04	14.91	15.118	0					5	3	2	0	0	0	0.81821	1	4974	4974		9.3474	0	1	13447000			3078	5910	1484	1505	3053	3053					0.0005613517747633523
AHKPPGGG	8	Unmodified	_AHKPPGGG_					0	0	0		TNFRSF4|p.D249N|1|0.6|ENSG00000186827|chr1:1211722-1211722|C/T|missense_variant;ENSG00000186827|ENST00000379236|TNFRSF4	TNFRSF4|p.D249N|1|0.6|ENSG00000186827|chr1:1211722-1211722|C/T|missense_variant	TNFRSF4|p.D249N|1|0.6|ENSG00000186827|chr1:1211722-1211722|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	361.1946105957031	2	360.693013	719.371472	-0.31085	-0.00011212	0.78983	0.00028489	0.47897	0.00017276	360.69298344977574	11.434	0.31698	11.153	10.953	11.27	-0.28186					21	13	2	0	0	0	0.86564	1	3666	3666		2.5775	1.7838	1	603890			3079	5910	1484	1505	3054	3054					0.0005613517747633523
AHRRRLVP	8	Unmodified	_AHRRRLVP_					0	0	0		ENST00000531473.5_1_8:144699171-144699615:-|nuORF	ENST00000531473.5_1_8:144699171-144699615:-|nuORF	ENST00000531473.5_1_8:144699171-144699615:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1004.6221313476562	1	1004.62244	1003.61517	0.70494	0.0007082	-0.95906	-0.00096349	-0.25411	-0.00025529	1004.6212541221124	51.626	0.30658	51.626	51.5	51.807	0					10	5	2	0	0	0	0.87576	1	19735	19735		0.79363	0	1	137050000			3080	8620	1485	1506	3055	3055					0.11350219342216405
AHRRRLVP	8	Unmodified	_AHRRRLVP_					0	0	0		ENST00000531473.5_1_8:144699171-144699615:-|nuORF	ENST00000531473.5_1_8:144699171-144699615:-|nuORF	ENST00000531473.5_1_8:144699171-144699615:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1004.62244	1003.61517	0.70494	0.0007082	-0.95906	-0.00096349	-0.25411	-0.00025529	1004.6212541221124	51.626	0.30658	51.626	51.5	51.807	0	0	0	NaN	0.79363	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137050000			3081	8620	1485	1506							0.11350219342216405
AHRVADLRK	9	Unmodified	_AHRVADLRK_					0	0	0			REV__nc|ENSG00000090316|Q7L5Y9-3|MAEA	REV__nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-MSMS	HCT116MG_D190212_S2	2	534.0018310546875	2	533.317432	1064.62031	0.34782	0.0001855	-0.30449	-0.00016239	0.043323	2.3105E-05	533.3171974818296	15.827	0.2088	15.493	15.376	15.585	-0.33451					5	3	2	0	0	0	0.60612	1	5267	5267		10.824	0	1	4045900	+		3082	10980	1486	1507	3056	3056					0.09058478414158344
AHSCNPSC	8	Unmodified	_AHSCNPSC_					0	0	0		ENST00000584876.1_1_18:29506506-29522769:-|nuORF	ENST00000584876.1_1_18:29506506-29522769:-|nuORF	ENST00000584876.1_1_18:29506506-29522769:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	818.2930908203125	1	818.291984	817.284707	0.88499	0.00072418	0.68485	0.00056041	1.5698	0.0012846	818.2923913102782	21.099	0.36314	20.889	20.708	21.071	-0.20959					13	6	3	0	0	0	0.83066	1	7285	7285		7.9102	2.1497	1	8637800			3083	8981	1487	1508	3057	3057					-0.13124355430920787
AHSCNPSC	8	Unmodified	_AHSCNPSC_					0	0	0		ENST00000584876.1_1_18:29506506-29522769:-|nuORF	ENST00000584876.1_1_18:29506506-29522769:-|nuORF	ENST00000584876.1_1_18:29506506-29522769:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	818.291984	817.284707	0.81708	0.00066861	0.5687	0.00046536	1.3858	0.001134	818.2920614593886	21.267	0.20627	20.884	20.807	21.013	-0.38288	-0.054309	-3.4833E-06	NaN	7.9102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6846300			3084	8981	1487	1508							-0.13124355430920787
AHVAGAAY	8	Unmodified	_AHVAGAAY_					0	0	0		ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	MULTI-MSMS	HCT116MG_D190212_S2	2	759.379150390625	1	759.378414	758.371138	1.0668	0.00081011	-0.24173	-0.00018357	0.82508	0.00062655	759.3781042415471	22.617	0.31136	22.232	22.051	22.362	-0.3852					8	5	2	0	0	0	0.49217	1	8027	8027		41.817	7.6299	1	31605000			3085	3209	1488	1509	3058	3058					-0.01771284542394369
AHVGVGKN	8	Unmodified	_AHVGVGKN_					0	0	0		ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	MSMS	HCT116MG_D190212_S1	1	391.2193298339844	2	391.219395	780.424236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.43	1	19.43	18.93	19.93	0								0	0	0	0.54805	1	6737	6737		40.449	10.224	1				3086	2184	1489	1510	3059	3059					0.025240932402766703
AHVGVGKN	8	Unmodified	_AHVGVGKN_					0	0	0		ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	MULTI-MSMS	HCT116MG_D190212_S2	2	391.2193298339844	2	391.219395	780.424236	0.019394	7.5871E-06	-0.23165	-9.0628E-05	-0.21226	-8.3041E-05	391.2192960064596	20.114	0.20738	19.739	19.61	19.817	-0.37503					5	3	2	0	0	0	0.60268	1	7041	7041		32.117	11.246	1	8136100			3087	2184	1489	1510	3060	3060					0.025240932402766703
AHVWRRWHWVW	11	Unmodified	_AHVWRRWHWVW_					0	0	0			REV__ENST00000233202.10_1_2:219261288-219261426:+|nuORF	REV__ENST00000233202.10_1_2:219261288-219261426:+|nuORF	MSMS	HCT116MG_D190212_S1	1	809.916748046875	2	809.918178	1617.8218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.778	1	32.778	32.278	33.278	0								0	0	0	0.96141	1	12107	12107		0.35063	0.043601	1		+		3088	14550	1490	1511	3061	3061					0.0376058717054093
AIAALMPKF	9	Unmodified	_AIAALMPKF_					0	0	0			REV__LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant	REV__LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	481.2796936035156	2	481.280606	960.546659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.721	1	45.721	45.221	46.221	0								0	0	0	0.76818	1	17329	17329		7.2892	0	1		+		3089	13482	1491	1512	3062	3062					0.06480793927482864
AICPNNHEV	9	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))PNNHEV_	AIC(1)PNNHEV		AIC(75)PNNHEV		0	1	0		ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;ENSG00000130429|ENST00000646101|ARPC1B	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	527.242919921875	2	527.242741	1052.47093	0.37464	0.00019753	-0.23769	-0.00012532	0.13695	7.2207E-05	527.2426896268817	23.967	0.20892	23.967	23.837	24.045	0					8	3	3	0	0	0	0.049545	1	8566	8566		74.929	28.008	1	8740000			3090	3080	1492	1513	3063	3063	17				-0.05320834990743606
AICPNNHEV	9	Carbamidomethyl (C)	_AIC(Carbamidomethyl (C))PNNHEV_	AIC(1)PNNHEV		AIC(55)PNNHEV		0	1	0		ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;ENSG00000130429|ENST00000646101|ARPC1B	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2429809570312	2	527.242741	1052.47093	0.54727	0.00028855	0.18657	9.837E-05	0.73385	0.00038692	527.2427433550578	24.436	0.31287	24.056	23.874	24.187	-0.38003					10	5	2	0	0	0	0.11731	1	8778	8778		54.774	14.325	1	27512000			3091	3080	1492	1513	3064	3064	17				-0.05320834990743606
AIDDGRGAP	9	Unmodified	_AIDDGRGAP_					0	0	0			REV__ENSG00000197191|ENST00000650725|CYSRT1	REV__ENSG00000197191|ENST00000650725|CYSRT1	MSMS	HCT116MG_D190212_S2	2	436.2168884277344	2	436.217049	870.419545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.331	1	18.962	18.462	19.462	-0.3695								0	0	0	0.50556	1	6697	6697		28.487	3.0875	1		+		3092	14063	1493	1514	3065	3065					-0.020848356931537637
AIDEDVLRY	9	Unmodified	_AIDEDVLRY_					0	0	0		ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	MULTI-MSMS	HCT116MG_D190212_S1	1	547.280029296875	2	547.279846	1092.54514	0.4328	0.00023686	0.098094	5.3685E-05	0.53089	0.00029054	547.279861737652	43.029	0.26004	43.029	42.9	43.16	0					9	4	3	0	0	0	0.11363	1	16269	16269		55.503	24.866	1	16944000			3093	1655	1494	1515	3066	3066					0.002568313724395921
AIDEDVLRY	9	Unmodified	_AIDEDVLRY_					0	0	0		ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	MULTI-MSMS	HCT116MG_D190212_S2	2	547.2801513671875	2	547.279846	1092.54514	0.21546	0.00011792	0.37643	0.00020601	0.59189	0.00032393	547.2800705951399	43.019	0.41079	42.948	42.791	43.202	-0.071896					16	7	3	0	0	0	0.0201	1	16306	16306		96.367	61.965	1	81097000			3094	1655	1494	1515	3067	3067					0.002568313724395921
AIDEDVLRY	9	Unmodified	_AIDEDVLRY_					0	0	0		ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	MULTI-MSMS	HCT116MG_D190212_S3	3	547.2801513671875	2	547.279846	1092.54514	0.50074	0.00027405	0.072761	3.9821E-05	0.5735	0.00031387	547.279847616111	43.312	0.36275	43.007	42.878	43.241	-0.30472					16	8	3	0	0	0	0.05892	2	16158	16107;16158		70.332	40.491	1	29391000			3095	1655	1494	1515	3068;3069	3069					0.002568313724395921
AIDEDVLRY	9	Unmodified	_AIDEDVLRY_					0	0	0		ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	MULTI-MSMS	HCT116MG_D190212_S4	4	547.2799072265625	2	547.279846	1092.54514	0.51561	0.00028218	-0.13278	-7.267E-05	0.38282	0.00020951	547.2798175073509	43.408	0.30168	43.034	42.913	43.215	-0.37433					21	10	3	0	0	0	0.0201	1	15941	15941		96.367	56.417	1	12681000			3096	1655	1494	1515	3070	3070					0.002568313724395921
AIDEQPSAGPQ	11	Unmodified	_AIDEQPSAGPQ_					0	0	0			REV__ENST00000540272.1_1_11:60711109-60714230:-|nuORF	REV__ENST00000540272.1_1_11:60711109-60714230:-|nuORF	MSMS	HCT116MG_D190212_S4	4	556.7647705078125	2	556.76456	1111.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.519	1	19.33	18.83	19.83	-0.18963								0	0	0	0.91257	1	6625	6625		18.373	4.467	1		+		3097	11401	1495	1516	3071	3071					-0.036729470126147135
AIDEQPSSPQF	11	Unmodified	_AIDEQPSSPQF_					0	0	0			REV__ENST00000504904.7_1_19:56985387-56988693:-|nuORF	REV__ENST00000504904.7_1_19:56985387-56988693:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	609.7855834960938	2	609.785492	1217.55643	0.67	0.00040856	-0.68768	-0.00041934	-0.017673	-1.0777E-05	609.7852023745799	33.143	0.25964	33.143	32.985	33.244	0					9	4	3	0	0	0	0.7298	1	12295	12295		10.8	1.4164	1	5633900	+		3098	16134	1496	1517	3072	3072					-0.043643913241112386
AIDHNQMFQY	10	Unmodified	_AIDHNQMFQY_					0	0	0		ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MSMS	HCT116MG_D190212_S1	1	633.7828979492188	2	633.78223	1265.54991	0.79896	0.00050636	0.60496	0.00038341	1.4039	0.00088977	633.7825340518743	41.233	0.26047	41.233	41.081	41.341	0					7	4	2	0	0	0	0.021264	1	15536	15536		118.07	74.296	1	19055000			3099	1489	1497	1518	3073	3073					-0.0722460775646141
AIDHNQMFQY	10	Unmodified	_AIDHNQMFQY_					0	0	0		ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MSMS	HCT116MG_D190212_S2	2	633.7813720703125	2	633.78223	1265.54991	0.35097	0.00022244	-1.1205	-0.00071018	-0.76957	-0.00048774	633.7808952034583	41.216	0.41202	41.148	40.83	41.242	-0.068199					14	7	3	0	0	0	0.025359	2	15579	15579;15593		110.67	33.85	1	64248000			3100	1489	1497	1518	3074;3075	3074					-0.0722460775646141
AIDNPLHY	8	Unmodified	_AIDNPLHY_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant;CNOT1|p.S92F|1|0.14|ENSG00000125107|chr16:58587814-58587814|G/A|missense_variant	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	HCT116MG_D190212_S1	1	471.73736572265625	2	471.737617	941.460681	0.0245	1.1558E-05	-0.055094	-2.599E-05	-0.030594	-1.4432E-05	471.73749584254284	39.423	0.24141	39.423	39.259	39.501	0					6	4	2	0	0	0	0.76257	1	14804	14804		15.768	3.2367	1	7480100			3101	2873	1498	1519	3076	3076					-0.012390746536880215
AIDNPLHY	8	Unmodified	_AIDNPLHY_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant;CNOT1|p.S92F|1|0.14|ENSG00000125107|chr16:58587814-58587814|G/A|missense_variant	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	HCT116MG_D190212_S2	2	471.7375793457031	2	471.737617	941.460681	0.3945	0.0001861	-0.25572	-0.00012063	0.13878	6.5469E-05	471.7375598101069	39.363	0.40906	39.285	39.019	39.428	-0.077835					13	7	2	0	0	0	0.12463	1	14795	14795		89.427	25.19	1	35001000			3102	2873	1498	1519	3077	3077					-0.012390746536880215
AIDNPLHY	8	Unmodified	_AIDNPLHY_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant;CNOT1|p.S92F|1|0.14|ENSG00000125107|chr16:58587814-58587814|G/A|missense_variant	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MSMS	HCT116MG_D190212_S3	3	471.7380676269531	2	471.737617	941.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.516	1	39.214	38.714	39.714	-0.30137								0	0	0	0.23148	1	14671	14671		63.563	11.933	1				3103	2873	1498	1519	3078	3078					-0.012390746536880215
AIDQLHLEY	9	Unmodified	_AIDQLHLEY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	HCT116MG_D190212_S1	1	551.2828979492188	2	551.282389	1100.55022	0.6151	0.0003391	0.028976	1.5974E-05	0.64408	0.00035507	551.2824034770463	45.898	0.31409	45.898	45.713	46.027	0					14	5	4	0	0	0	0.0035136	1	17408	17408		168.54	114.7	1	58926000			3104	3079	1499	1520	3079	3079					0.003971352350617963
AIDQLHLEY	9	Unmodified	_AIDQLHLEY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	HCT116MG_D190212_S2	2	551.2817993164062	2	551.282389	1100.55022	0.38734	0.00021353	0.25927	0.00014293	0.64661	0.00035646	551.2824479989355	45.939	0.35934	45.837	45.658	46.017	-0.1014					18	6	4	0	0	0	0.0063854	1	17468	17468		125.53	77.78	1	231230000			3105	3079	1499	1520	3080	3080					0.003971352350617963
AIDRLVNIY	9	Unmodified	_AIDRLVNIY_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	HCT116MG_D190212_S2	2	538.808837890625	2	538.808574	1075.60259	0.49666	0.0002676	0.043773	2.3585E-05	0.54043	0.00029119	538.8086144970624	46.383	0.30965	46.272	46.11	46.42	-0.11122					8	5	2	0	0	0	0.061422	1	17681	17681		69.105	9.031	1	15234000			3106	1504	1500	1521	3081	3081					0.06781718368665679
AIDRLVNIY	9	Unmodified	_AIDRLVNIY_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	538.808574	1075.60259	0.58896	0.00031734	-0.67536	-0.00036389	-0.0864	-4.6553E-05	539.3095056767196	46.363	0.20685	46.363	46.182	46.389	0	0.045551	-0.00061284	NaN	69.105	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8492000			3107	1504	1500	1521							0.06781718368665679
AIDTEERL	8	Unmodified	_AIDTEERL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7455749511719	2	473.745639	945.476725	0.41246	0.0001954	-0.68875	-0.00032629	-0.27629	-0.00013089	473.7451137079544	31.318	0.25862	31.069	30.94	31.198	-0.24883					7	4	2	0	0	0	0.51345	1	11565	11565		39.95	1.9757	1	10467000			3108	2435	1501	1522	3082	3082					0.0018058679257819676
AIDTEERL	8	Unmodified	_AIDTEERL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	473.74560546875	2	473.745639	945.476725	0.1587	7.5181E-05	-0.39205	-0.00018573	-0.23335	-0.00011055	473.74538999517733	31.465	0.26112	31.195	31.012	31.273	-0.27028					6	4	2	0	0	0	0.33298	1	11505	11505		56.177	8.4284	1	4591300			3109	2435	1501	1522	3083	3083					0.0018058679257819676
AIETQKALD	9	Unmodified	_AIETQKALD_					0	0	0			REV__nc|ENSG00000155511|P42261-3|GRIA1	REV__nc|ENSG00000155511|P42261-3|GRIA1	MULTI-MSMS	HCT116MG_D190212_S2	2	988.5369262695312	1	988.530952	987.523675	0.91832	0.00090779	2.8448	0.0028121	3.7631	0.0037199	988.5338624027117	57.236	0.25985	57.057	56.947	57.207	-0.17904					6	4	2	0	0	0	0.35128	1	22122	22122		25.399	2.663	1	5865100	+		3110	12702	1502	1523	3084	3084					0.029414463436978622
AIGDAVIAA	9	Unmodified	_AIGDAVIAA_					0	0	0			REV__tr|U7SNA6|U7SNA6_FUSNUBiopolymertransporterExbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01721PE=3SV=1	REV__tr|U7SNA6|U7SNA6_FUSNUBiopolymertransporterExbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01721PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	800.4521484375	1	800.451245	799.443968	1.3634	0.0010913	-0.34375	-0.00027516	1.0197	0.00081619	800.4509779437238	46.814	0.25753	46.703	46.522	46.78	-0.11121					7	4	2	0	0	0	0.035402	1	17848	17848		81.864	7.4677	1	28220000	+		3111	17732	1503	1524	3085	3085					0.03622424460365892
AIGDAVIAA	9	Unmodified	_AIGDAVIAA_					0	0	0			REV__tr|U7SNA6|U7SNA6_FUSNUBiopolymertransporterExbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01721PE=3SV=1	REV__tr|U7SNA6|U7SNA6_FUSNUBiopolymertransporterExbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01721PE=3SV=1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	800.451245	799.443968	0.93909	0.00075169	0.25163	0.00020142	1.1907	0.00095311	800.4520111812266	46.673	0.15581	46.673	46.595	46.751	0	-0.031055	0.00020396	NaN	81.864	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4752400	+		3112	17732	1503	1524							0.03622424460365892
AIGDAVIAA	9	Unmodified	_AIGDAVIAA_					0	0	0			REV__tr|U7SNA6|U7SNA6_FUSNUBiopolymertransporterExbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01721PE=3SV=1	REV__tr|U7SNA6|U7SNA6_FUSNUBiopolymertransporterExbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01721PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	800.451245	799.443968	1.3634	0.0010913	-0.34375	-0.00027516	1.0197	0.00081619	800.4509779437238	46.814	0.25753	46.703	46.522	46.78	-0.11121	-0.0010418	-0.00027261	NaN	81.864	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28220000	+		3113	17732	1503	1524							0.03622424460365892
AIGSPGPA	8	Unmodified	_AIGSPGPA_					0	0	0		COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	669.3573608398438	1	669.356616	668.34934	0.76725	0.00051356	0.19335	0.00012942	0.9606	0.00064298	669.3566750499896	22.421	0.41684	22.406	22.235	22.652	-0.014679					11	7	2	0	0	0	0.21411	1	7878	7878		70.865	0	1	2811400			3114	519	1504	1525	3086	3086					0.0018991070903666696
AIGSPGPA	8	Unmodified	_AIGSPGPA_					0	0	0		COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	669.3565063476562	1	669.356616	668.34934	0.57323	0.0003837	-0.15335	-0.00010265	0.41988	0.00028105	669.3564816507711	22.648	0.52105	22.411	22.185	22.706	-0.23758					12	9	2	0	0	0	0.21411	1	7899	7899		70.865	0	1	2882200			3115	519	1504	1525	3087	3087					0.0018991070903666696
AIHAATWG	8	Unmodified	_AIHAATWG_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MSMS	HCT116MG_D190212_S1	1	413.7134704589844	2	413.713945	825.413337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.057	1	42.057	41.557	42.557	0								0	0	0	0.8837	1	15852	15852		2.3027	0	1		+		3116	10824	1505	1526	3088	3088					-0.0063530913402019
AIHLPTIGNQ	10	Unmodified	_AIHLPTIGNQ_					0	0	0			REV__KIAA0146-ANK1|4|fusion	REV__KIAA0146-ANK1|4|fusion	MSMS	HCT116MG_D190212_S1	1	532.2965087890625	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.088	1	42.088	41.588	42.588	0								0	0	0	0.94107	1	15865	15865		6.7232	0.51738	1		+		3117	16925	1506	1527	3089	3089					0.05340547708851773
AIIAHLQPTLM	11	Unmodified	_AIIAHLQPTLM_					0	0	0			REV__nc|ENSG00000157827|Q96PY5|FMNL2	REV__nc|ENSG00000157827|Q96PY5|FMNL2	MSMS	HCT116MG_D190212_S1	1	403.2323913574219	3	403.233765	1206.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.335	1	64.335	63.835	64.835	0								0	0	0	0.9619	1	24822	24822		0.094841	0	1		+		3118	12765	1507	1528	3090	3090					0.08439193593471828
AIIGGMFTV	9	Unmodified	_AIIGGMFTV_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	HCT116MG_D190212_S2	2	908.4915161132812	1	908.491001	907.483725	0.76833	0.00069802	-0.13798	-0.00012535	0.63035	0.00057267	908.4908521781795	57.464	0.20807	57.289	57.159	57.367	-0.17494					6	3	2	0	0	0	0.28709	1	22210	22210		32.117	5.7757	1	106710000			3119	2924	1508	1529	3091	3091					0.026282281394401252
AIILLQTPF	9	Unmodified	_AIILLQTPF_					0	0	0		ENST00000490863.5_1_1:54650890-54651175:-|nuORF	ENST00000490863.5_1_1:54650890-54651175:-|nuORF	ENST00000490863.5_1_1:54650890-54651175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2994079589844	2	508.312961	1014.61137	0.45349	0.00023052	-0.22493	-0.00011434	0.22856	0.00011618	508.312795544975	55.962	0.15297	55.776	55.691	55.844	-0.18565					6	2	3	0	0	0	0.31596	1	21604	21604		29.082	2.1979	1	7338700			3120	8336	1509	1530	3092	3092					0.10464692005120924
AIINTAKKNL	10	Unmodified	_AIINTAKKNL_					0	0	0			REV__EFCAB13|p.S342Afs*25|2|0.23|ENSG00000178852|chr17:47374612-47374612|A/-|frameshift_variant	REV__EFCAB13|p.S342Afs*25|2|0.23|ENSG00000178852|chr17:47374612-47374612|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	543.3353881835938	2	543.337498	1084.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.56	1	51.21	50.71	51.71	-0.35028								0	0	0	0.85468	1	19193	19193		21.747	2.4897	1		+		3121	10439	1510	1531	3093	3093					0.12149980294066154
AIIQRFWY	8	Unmodified	_AIIQRFWY_					0	0	0			REV__ENST00000491113.1_1_20:35234354-35236222:+|nuORF	REV__ENST00000491113.1_1_20:35234354-35236222:+|nuORF	MSMS	HCT116MG_D190212_S4	4	366.2021484375	3	366.202793	1095.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.793	1	27.471	26.971	27.971	-0.32157								0	0	0	0.8837	1	9966	9966		4.3292	0.38484	1		+		3122	11113	1511	1532	3094	3094					0.04258056922412834
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S2	2	944.56689453125	1	944.566275	943.558998	0.74128	0.00070019	0.10853	0.00010252	0.84981	0.00080271	944.5661143016441	57.412	0.25973	57.237	57.107	57.367	-0.17494					7	4	3	0	0	0	0.026974	2	22173	22164;22173		89.427	7.8137	1	20815000			3123	2243	1512	1533	3095;3096	3096					0.08496108871520391
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-SECPEP	HCT116MG_D190212_S2	2	472.2752990722656	2	472.786776	943.558998	0.32084	0.00015169	-0.053305	-2.5202E-05	0.26753	0.00012649	472.7868417281599	57.406	0.1557	57.231	57.107	57.263	-0.17494					6	2	3	0	0	0	0.19805	1	22168	22168		32.117	3.6301	1	8051700			3124	2243	1512	1533	3097	3097					0.08496108871520391
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	944.566275	943.558998	0.82368	0.00077802	0.096688	9.1328E-05	0.92037	0.00086935	944.5660693499772	57.178	0.15515	57.178	57.049	57.204	0	-0.029459	-6.8902E-06	NaN	89.427	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15401000			3125	2243	1512	1533							0.08496108871520391
AILGIHNEV	9	Unmodified	_AILGIHNEV_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MSMS	HCT116MG_D190212_S2	2	483.2740783691406	2	483.274367	964.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.638	1	40.568	40.068	41.068	-0.069626								0	0	0	0.30238	1	15331	15331		39.95	1.9757	1				3126	1262	1513	1534	3098	3098					0.05049473788812975
AILHIPLVLKI	11	Unmodified	_AILHIPLVLKI_					0	0	0		TP53BP1|p.I104Sfs*95|1|0.74|ENSG00000067369|chr15:43491716-43491716|G/-|frameshift_variant	TP53BP1|p.I104Sfs*95|1|0.74|ENSG00000067369|chr15:43491716-43491716|G/-|frameshift_variant	TP53BP1|p.I104Sfs*95|1|0.74|ENSG00000067369|chr15:43491716-43491716|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	615.4226684570312	2	615.420834	1228.82712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.053	1	38.968	38.468	39.468	-0.084618								0	0	0	0.95521	1	14686	14686		3.5965	1.7523	1				3127	18283	1514	1535	3099	3099					0.22185453189763393
AINLCLVTPV	10	Unmodified	_AINLCLVTPV_					0	0	0			REV__TMEM63C|p.N75Efs*2|1|0.35|ENSG00000165548|chr14:77219569-77219570|-/G|frameshift_variant	REV__TMEM63C|p.N75Efs*2|1|0.35|ENSG00000165548|chr14:77219569-77219570|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	521.3263549804688	2	521.801903	1041.58925	0.36849	0.00019228	-1.0093	-0.00052664	-0.64078	-0.00033436	522.3028571762728	56.737	0.2069	56.737	56.634	56.841	0					5	3	2	0	0	0	0.29999	1	21824	21824		18.146	5.1039	1	5621700	+		3128	13060	1515	1536	3100	3100					0.0701214426505885
AINSDGPYQPP	11	Unmodified	_AINSDGPYQPP_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-4|WNK1	REV__nc|ENSG00000060237|Q9H4A3-4|WNK1	MSMS	HCT116MG_D190212_S4	4	386.852294921875	3	386.852377	1157.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.052	1	20.842	20.342	21.342	-0.20959								0	0	0	0.95113	1	7244	7244		2.6312	0.19645	1		+		3129	10667	1516	1537	3101	3101					-0.03716356632935458
AIQDEIRSV	9	Unmodified	_AIQDEIRSV_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MSMS	HCT116MG_D190212_S1	1	515.7802124023438	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.149	1	37.149	36.649	37.649	0								0	0	0	0.29838	1	13870	13870		40.239	7.4535	1				3130	4669	1517	1538	3102	3102					0.03188251092274186
AIQDEIRSV	9	Unmodified	_AIQDEIRSV_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7802734375	2	515.780013	1029.54547	0.15428	7.9575E-05	0.091336	4.7109E-05	0.24562	0.00012668	515.7800699202801	37.103	0.25827	36.988	36.808	37.066	-0.11478					7	4	2	0	0	0	0.35842	1	13927	13927		24.991	0.97039	1	21098000			3131	4669	1517	1538	3103	3103					0.03188251092274186
AIQDEIRSV	9	Unmodified	_AIQDEIRSV_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	515.780013	1029.54547	0.41704	0.0002151	0.26472	0.00013654	0.68176	0.00035164	515.7801137606069	37.068	0.20761	37.068	36.938	37.146	0	0.039992	2.5882E-05	NaN	24.991	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9542300			3132	4669	1517	1538							0.03188251092274186
AIQDKLFQV	9	Unmodified	_AIQDKLFQV_					0	0	0		ENST00000514908.5_1_3:126423131-126653948:+|nuORF;ENSG00000159685|ENST00000290913|CHCHD6	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	531.3024291992188	2	531.303124	1060.5917	0.19592	0.00010409	-0.88338	-0.00046934	-0.68745	-0.00036525	531.3025851908731	48.841	0.25653	48.841	48.666	48.922	0					13	4	4	0	0	0	0.0055242	1	18589	18589		133.05	40.399	1	62408000			3133	4420	1518	1539	3104	3104					0.06382315994369492
AIQDKLFQV	9	Unmodified	_AIQDKLFQV_					0	0	0		ENST00000514908.5_1_3:126423131-126653948:+|nuORF;ENSG00000159685|ENST00000290913|CHCHD6	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	MSMS	HCT116MG_D190212_S2	2	531.302978515625	2	531.303124	1060.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.919	1	48.765	48.265	49.265	-0.15405								0	0	0	0.007573	1	18705	18705		110.55	41.448	1				3134	4420	1518	1539	3105	3105					0.06382315994369492
AIQDKLFQV	9	Unmodified	_AIQDKLFQV_					0	0	0		ENST00000514908.5_1_3:126423131-126653948:+|nuORF;ENSG00000159685|ENST00000290913|CHCHD6	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	531.3028564453125	2	531.303124	1060.5917	0.57046	0.00030309	-1.592	-0.00084582	-1.0215	-0.00054273	531.3025339975663	49.159	0.31772	48.843	48.605	48.922	-0.31596					7	5	2	0	0	0	0.22946	1	18524	18524		38.176	0.20157	1	3031700			3135	4420	1518	1539	3106	3106					0.06382315994369492
AIRAKECLP	9	Unmodified	_AIRAKECLP_					0	0	0			REV__ENSG00000178645|ENST00000374111|C10orf53	REV__ENSG00000178645|ENST00000374111|C10orf53	MSMS	HCT116MG_D190212_S3	3	500.78369140625	2	500.784044	999.553536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.183	1	43.876	43.376	44.376	-0.30759								0	0	0	0.58443	1	16509	16509		24.674	5.2349	1		+		3136	13609	1519	1540	3107	3107					0.05374106808051238
AIREARAQHT	10	Unmodified	_AIREARAQHT_					0	0	0		XDH|p.A1281E|1|0.41|ENSG00000158125|chr2:31337750-31337750|G/T|missense_variant	XDH|p.A1281E|1|0.41|ENSG00000158125|chr2:31337750-31337750|G/T|missense_variant	XDH|p.A1281E|1|0.41|ENSG00000158125|chr2:31337750-31337750|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	384.8808898925781	3	384.879261	1151.61595	-0.14601	-5.6197E-05	3.0644	0.0011794	2.9184	0.0011232	384.8807875269702	22.767	0.20852	22.767	22.637	22.845	0					5	3	2	0	0	0	0.83158	1	8102	8102		5.4027	0	1	5024900			3137	18699	1520	1541	3108	3108					0.04620969200595937
AIRHFEQA	8	Unmodified	_AIRHFEQA_					0	0	0		nc|ENSG00000090530|Q8IVL5-2|P3H2;ENSG00000090530|ENST00000319332|P3H2	nc|ENSG00000090530|Q8IVL5-2|P3H2	nc|ENSG00000090530|Q8IVL5-2|P3H2	MSMS	HCT116MG_D190212_S1	1	486.25482177734375	2	486.256508	970.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.076	1	31.076	30.576	31.576	0								0	0	0	0.8837	1	11421	11421		8.5933	0.68312	1				3138	1543	1521	1542	3109	3109					0.012034363317980024
AISDFYYTV	9	Unmodified	_AISDFYYTV_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-MSMS	HCT116MG_D190212_S2	2	1078.5089111328125	1	1078.50915	1077.50188	0.38434	0.00041452	-0.0059103	-6.3743E-06	0.37843	0.00040814	1078.5090024433962	53.972	0.25718	53.783	53.636	53.893	-0.1894					8	4	2	0	0	0	0.065014	1	20791	20791		67.344	25.249	1	33606000			3139	4520	1522	1543	3110	3110					-0.03377358404873121
AISERWWIAWQ	11	Unmodified	_AISERWWIAWQ_					0	0	0		ENST00000315367.3_1_8:96146033-96166318:+|nuORF	ENST00000315367.3_1_8:96146033-96166318:+|nuORF	ENST00000315367.3_1_8:96146033-96166318:+|nuORF	MSMS	HCT116MG_D190212_S2	2	723.3677368164062	2	723.369861	1444.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.455	1	25.086	24.586	25.586	-0.36914								0	0	0	0.95113	1	9167	9167		5.7319	1.203	1				3140	7081	1523	1544	3111	3111					0.020595551000951673
AISGTSEDAAL	11	Unmodified	_AISGTSEDAAL_					0	0	0			REV__ENST00000566012.1_1_16:30077179-30079547:+|nuORF	REV__ENST00000566012.1_1_16:30077179-30079547:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.2459716796875	2	517.753661	1033.49277	0.20564	0.00010647	1.484	0.00076836	1.6897	0.00087483	517.7543531542	23.294	0.41503	22.908	22.778	23.193	-0.3852					11	7	2	0	0	0	0.3453	1	8301	8301		24.021	2.2739	1	26331000	+		3141	9916	1524	1545	3112	3112					-0.022637517611883595
AISQYPTRSPQ	11	Unmodified	_AISQYPTRSPQ_					0	0	0		ENST00000484352.5_1_2:74757313-74758690:+|nuORF;nc|ENSG00000115317|O43464-4|HTRA2	ENST00000484352.5_1_2:74757313-74758690:+|nuORF	ENST00000484352.5_1_2:74757313-74758690:+|nuORF	MSMS	HCT116MG_D190212_S4	4	624.3226318359375	2	624.322576	1246.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.647	1	31.277	30.777	31.777	-0.37026								0	0	0	0.86121	1	11494	11494		24.991	8.8419	1				3142	8280	1525	1546	3113	3113					0.01714996558121129
AITHIGGL	8	Unmodified	_AITHIGGL_					0	0	0			REV__ENSG00000183559|ENST00000329446|C10orf120	REV__ENSG00000183559|ENST00000329446|C10orf120	MULTI-MSMS	HCT116MG_D190212_S2	2	391.2318420410156	2	391.231971	780.449388	-0.09591	-3.7523E-05	0.23218	9.0835E-05	0.13627	5.3312E-05	391.23195399830126	18.971	0.26118	18.601	18.471	18.732	-0.3695					8	4	2	0	0	0	0.53394	1	6562	6562		38.151	3.9638	1	18616000	+		3143	13767	1526	1547	3114	3114					0.05038148042865487
AITPPPAA	8	Unmodified	_AITPPPAA_					0	0	0		ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	MSMS	HCT116MG_D190212_S2	2	369.2120056152344	2	369.213246	736.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.646	1	38.561	38.061	39.061	-0.084618								0	0	0	0.8837	1	14522	14522		10.183	0	1				3144	6243	1527	1548	3115	3115					0.03319056777218066
AIVDADRI	8	Unmodified	_AIVDADRI_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	HCT116MG_D190212_S1	1	436.74542236328125	2	436.745442	871.476331	-0.11294	-4.9328E-05	-0.16213	-7.0807E-05	-0.27507	-0.00012014	436.74535999507896	36.867	0.20714	36.867	36.783	36.99	0					5	3	2	0	0	0	0.51336	1	13778	13778		39.957	3.8303	1	10376000			3145	6264	1528	1549	3116	3116					0.03545211863365694
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	464.27984619140625	2	464.279118	926.543683	0.5089	0.00023627	-0.10027	-4.6552E-05	0.40863	0.00018972	464.2790537430517	37.356	0.61235	37.356	36.99	37.602	0					25	11	3	0	0	0	0.0064416	2	13944	13853;13944		125.04	53.904	1	67190000			3146	5641	1529	1550	3117;3118	3118					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S2	2	464.2217102050781	2	464.279118	926.543683	0.028106	1.3049E-05	-0.30637	-0.00014224	-0.27826	-0.00012919	464.2789614390103	37.455	0.76968	37.352	36.819	37.589	-0.10318					38	14	4	0	0	0	0.0096585	3	13931	13931;13946;14101		114.19	49.95	1	183720000			3147	5641	1529	1550	3119;3120;3121	3119					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S2	2	927.5512084960938	1	927.550959	926.543683	0.8595	0.00079723	-0.3204	-0.00029718	0.5391	0.00050005	927.5507946535203	37.361	0.46085	37.258	36.974	37.435	-0.10318					11	8	2	0	0	0	0.056114	1	14032	14032		71.708	29.752	1	24886000			3148	5641	1529	1550	3122	3122					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MSMS	HCT116MG_D190212_S3	3	464.2796325683594	2	464.279118	926.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.539	1	37.237	36.737	37.737	-0.30137								0	0	0	0.040848	1	13908	13908		72.968	15.497	1				3149	5641	1529	1550	3123	3123					0.07747242074333371
AIVEAHSDNLI	11	Unmodified	_AIVEAHSDNLI_					0	0	0			REV__ADAT1|p.G358Rfs*17|1|0.13|ENSG00000065457|chr16:75608960-75608961|-/T|frameshift_variant;REV__ENSG00000065457|ENST00000564657|ADAT1	REV__ENSG00000065457|ENST00000564657|ADAT1	MULTI-MSMS	HCT116MG_D190212_S1	1	394.5433654785156	3	394.543544	1180.6088	-0.099889	-3.9411E-05	-0.28334	-0.00011179	-0.38323	-0.0001512	394.5433445071486	21.672	0.26051	21.672	21.489	21.75	0					6	4	2	0	0	0	0.65731	1	7642	7642		17.863	0.81459	1	10949000	+		3150	9864;10700	1530	1551	3124	3124					0.025721918095314322
AIVLVVTAKKN	11	Unmodified	_AIVLVVTAKKN_					0	0	0			REV__EIF2A|p.A234V|1|0.07|ENSG00000144895|chr3:150568182-150568182|C/T|missense_variant	REV__EIF2A|p.A234V|1|0.07|ENSG00000144895|chr3:150568182-150568182|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	578.3748779296875	2	578.376623	1154.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.046	1	43.74	43.24	44.24	-0.30629								0	0	0	0.94416	1	16453	16453		9.3831	1.473	1		+		3151	10445	1531	1552	3125	3125					0.16751412879307281
AIYMKFDF	8	Unmodified	_AIYMKFDF_					0	0	0			REV__ENSG00000112308|ENST00000378119|C6orf62	REV__ENSG00000112308|ENST00000378119|C6orf62	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7548217773438	2	517.754421	1033.49429	0.20563	0.00010647	0.015836	8.199E-06	0.22147	0.00011467	517.7543531542	23.294	0.41503	22.908	22.778	23.193	-0.3852					11	7	2	0	0	0	0.50777	1	8317	8317		40.449	0.49126	1	26331000	+		3152	11456	1532	1553	3126	3126					-0.021117892061283783
AIYYDPNPQ	9	Unmodified	_AIYYDPNPQ_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;ENST00000573603.1_1_17:7412268-7412987:+|nuORF	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MSMS	HCT116MG_D190212_S4	4	540.75146484375	2	540.753464	1079.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.763	1	18.583	18.083	19.083	-0.18052								0	0	0	0.76575	1	6320	6320		15.847	3.6065	1				3153	5627	1533	1554	3127	3127					-0.0441912669039084
AKAGSLGRTG	10	Unmodified	_AKAGSLGRTG_					0	0	0			REV__ENST00000471077.2_1_7:129844917-129845022:-|nuORF	REV__ENST00000471077.2_1_7:129844917-129845022:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2619323730469	2	459.261791	916.509028	0.050514	2.3199E-05	0.56041	0.00025738	0.61093	0.00028058	459.26203652532126	15.841	0.2088	15.507	15.376	15.585	-0.33451					5	3	2	0	0	0	0.45751	1	5307	5307		38.176	5.8701	1	3023400	+		3154	15869	1534	1555	3128	3128					0.04743418986231518
AKAKAQFYRVN	11	Unmodified	_AKAKAQFYRVN_					0	0	0		ENST00000476601.5_1_6:29760033-29760482:+|nuORF;ENST00000446817.1_1_6:29760033-29760488:+|nuORF;ENST00000457107.5_1_6:29760033-29761240:+|nuORF	ENST00000476601.5_1_6:29760033-29760482:+|nuORF	ENST00000476601.5_1_6:29760033-29760482:+|nuORF	MSMS	HCT116MG_D190212_S2	2	648.3673095703125	2	648.364579	1294.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.34	1	48.196	47.696	48.696	-0.1437								0	0	0	0.94012	1	18466	18466		11.495	2.1116	1				3155	7956	1535	1556	3129	3129					0.07903572445638929
AKALKLKKAVL	11	Unmodified	_AKALKLKKAVL_					0	0	0		ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MSMS	HCT116MG_D190212_S2	2	592.0789184570312	2	591.918458	1181.82236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.88	1	48.733	48.233	49.233	-0.1475								0	0	0	0.95196	1	18689	18689		5.2969	1.7004	1				3156	8247	1536	1557	3130	3130					0.2387256904703463
AKAPEKAA	8	Unmodified	_AKAPEKAA_					0	0	0			REV__ENSG00000157895|ENST00000288757|C12orf43	REV__ENSG00000157895|ENST00000288757|C12orf43	MSMS	HCT116MG_D190212_S4	4	393.2279968261719	2	393.229428	784.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.886	1	42.511	42.011	43.011	-0.37493								0	0	0	0.8837	1	15779	15779		2.3027	0	1		+		3157	12769	1537	1558	3131	3131					0.04345844180227232
AKAVAALP	8	Unmodified	_AKAVAALP_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	MSMS	HCT116MG_D190212_S4	4	370.735107421875	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.968	1	50.613	50.113	51.113	-0.35483								0	0	0	0.8837	1	18954	18954		0.79363	0	1				3158	6628	1538	1559	3132	3132					0.07907336048208435
AKDLDCNWEIN	11	Unmodified	_AKDLDCNWEIN_					0	0	0			REV__nc|ENSG00000083454|Q93086-2|P2RX5	REV__nc|ENSG00000083454|Q93086-2|P2RX5	MULTI-MSMS	HCT116MG_D190212_S2	2	661.3010864257812	2	660.798077	1319.5816	0.47096	0.00031121	-0.35374	-0.00023375	0.11722	7.7456E-05	661.2997627157644	16.734	0.26035	16.392	16.204	16.464	-0.34183					15	4	5	0	0	0	0.72004	1	5665	5665		14.405	0.79051	1	3643300	+		3159	10903	1539	1560	3133	3133					-0.06540659793154191
AKDLDCNWEIN	11	Unmodified	_AKDLDCNWEIN_					0	0	0			REV__nc|ENSG00000083454|Q93086-2|P2RX5	REV__nc|ENSG00000083454|Q93086-2|P2RX5	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	660.798077	1319.5816	0.47096	0.00031121	-0.35374	-0.00023375	0.11722	7.7456E-05	661.2997627157644	16.734	0.26035	16.392	16.204	16.464	-0.34183	0	0	NaN	14.405	15	4	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3643300	+		3160	10903	1539	1560							-0.06540659793154191
AKEDWRRAK	9	Unmodified	_AKEDWRRAK_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MSMS	HCT116MG_D190212_S1	1	580.3199462890625	2	580.320171	1158.62579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.992	1	16.992	16.492	17.492	0								0	0	0	0.76913	1	5755	5755		3.9444	0.3479	1		+		3161	10779	1540	1561	3134	3134					0.05282157205988369
AKEEVRESA	9	Unmodified	_AKEEVRESA_					0	0	0		nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.76080322265625	2	509.76182	1017.50909	0.24902	0.00012694	-0.76933	-0.00039217	-0.52031	-0.00026523	509.7612119933573	16.066	0.52228	15.732	15.428	15.951	-0.33451					14	9	2	0	0	0	0.090581	1	5398	5398		60.074	0	1	9429900			3162	3799	1541	1562	3135	3135					0.0010337419556663008
AKGEEAFQMS	10	Unmodified	_AKGEEAFQMS_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638;ENST00000492262.1_1_2:71654468-71655831:+|nuORF	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2503662109375	2	549.250231	1096.48591	0.64977	0.00035689	0.22415	0.00012311	0.87392	0.00048	549.2502508177071	43.557	0.36021	43.484	43.355	43.715	-0.073376					9	6	2	0	0	0	0.75066	1	16546	16546		16.149	1.3108	1	18053000			3163	1313	1542	1563	3136	3136					-0.05847387913399871
AKGRCIPP	8	Unmodified	_AKGRCIPP_					0	0	0		DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	421.22418212890625	2	421.239273	840.463992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.727	1	24.347	23.847	24.847	-0.38003								0	0	0	0.8837	1	8873	8873		9.3474	2.9933	1				3164	698	1543	1564	3137	3137					0.03737896919346895
AKIKRPGH	8	Unmodified	_AKIKRPGH_					0	0	0			REV__ENST00000489226.5_1_9:130492547-130493681:+|nuORF	REV__ENST00000489226.5_1_9:130492547-130493681:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	453.7850341796875	2	453.785236	905.555919	-0.003127	-1.419E-06	0.10254	4.6531E-05	0.099412	4.5112E-05	453.78537491119585	60.892	1.7061	60.892	60.698	62.404	0					50	32	3	0	0	0	0.87576	1	23847	23847		0.79363	0	1	103260000	+		3165	13136	1544	1565	3138	3138					0.09936323328042818
AKIKRPGH	8	Unmodified	_AKIKRPGH_					0	0	0			REV__ENST00000489226.5_1_9:130492547-130493681:+|nuORF	REV__ENST00000489226.5_1_9:130492547-130493681:+|nuORF	MSMS	HCT116MG_D190212_S2	2	453.78564453125	2	453.785236	905.555919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.938	1	60.789	60.289	61.289	-0.14852								0	0	0	0.8837	1	23595	23595		0.79363	0	1		+		3166	13136	1544	1565	3139	3139					0.09936323328042818
AKIKVLKLIK	10	Unmodified	_AKIKVLKLIK_					0	0	0		IQCH|p.S133L|1|0.07|ENSG00000103599|chr15:67336985-67336985|C/T|missense_variant	IQCH|p.S133L|1|0.07|ENSG00000103599|chr15:67336985-67336985|C/T|missense_variant	IQCH|p.S133L|1|0.07|ENSG00000103599|chr15:67336985-67336985|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	577.42138671875	2	577.423377	1152.8322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.731	1	32.731	32.231	33.231	0								0	0	0	0.9696	1	12088	12088		0.35063	0.35063	1				3167	9244	1545	1566	3140	3140					0.26189757052384266
AKKAMVFL	8	Unmodified	_AKKAMVFL_					0	0	0		nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	MSMS	HCT116MG_D190212_S3	3	454.2745056152344	2	454.275324	906.536095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.016	1	49.701	49.201	50.201	-0.31525								0	0	0	0.8837	1	18849	18849		8.5933	2.8329	1				3168	1001	1546	1567	3141	3141					0.0790881127306875
AKKFMMYYIF	10	Unmodified	_AKKFMMYYIF_					0	0	0			REV__ENSG00000121270|ENST00000356608|ABCC11	REV__ENSG00000121270|ENST00000356608|ABCC11	MSMS	HCT116MG_D190212_S2	2	671.40185546875	2	671.340338	1340.66612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.81	1	43.731	43.231	44.231	-0.078373								0	0	0	0.95507	1	16622	16622		3.5965	0.31518	1		+		3169	11712	1547	1568	3142	3142					0.009416194898903996
AKKKKKKKKKL	11	Unmodified	_AKKKKKKKKKL_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MSMS	HCT116MG_D190212_S1	1	678.5018920898438	2	678.500481	1354.98641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.756	1	41.756	41.256	42.256	0								0	0	0	0.96149	1	15731	15731		0.30703	0.30703	1				3170	5714	1548	1569	3143	3143					0.3231158653777584
AKKKKKKKKL	10	Unmodified	_AKKKKKKKKL_					0	0	0			REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S2	2	614.4525146484375	2	614.453	1226.89145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.531	1	14.211	13.711	14.711	-0.31952								0	0	0	0.96453	1	4764	4764		1.4819	0	1		+		3171	16197	1549	1570	3144	3144					0.28707653066589955
AKKKKRRA	8	Unmodified	_AKKKKRRA_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MSMS	HCT116MG_D190212_S4	4	493.34051513671875	2	493.34071	984.666866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.344	1	58.055	57.555	58.555	-0.28879								0	0	0	0.8837	1	21926	21926		0.69038	0.088878	1		+		3172	14028	1550	1571	3145	3145					0.1739196303611834
AKKKKRRRLKR	11	Unmodified	_AKKKKRRRLKR_					0	0	0			REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF	REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF	MSMS	HCT116MG_D190212_S4	4	734.5137329101562	2	734.512777	1467.011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.398	1	13.233	12.733	13.733	-0.16496								0	0	0	0.96121	1	4200	4200		0.30703	0.30703	1		+		3173	16312	1551	1572	3146	3146					0.2961765946383821
AKKKKRRRLKR	11	Unmodified	_AKKKKRRRLKR_					0	0	0			REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF	REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF	MSMS	HCT116MG_D190212_S4	4	490.010986328125	3	490.010944	1467.011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.356	1	14.195	13.695	14.695	-0.16089								0	0	0	0.96194	1	4540	4540		0.073264	0.073264	1		+		3174	16312	1551	1572	3147	3147					0.2961765946383821
AKKKNFFKL	9	Unmodified	_AKKKNFFKL_					0	0	0		ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1;ABCB1|p.F201Sfs*5|1|0.22|ENSG00000085563|chr7:87566170-87566170|A/-|frameshift_variant;ABCB1|p.N809Tfs*6|1|0.33|ENSG00000085563|chr7:87536513-87536513|T/-|frameshift_variant	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	375.2391052246094	3	375.237726	1122.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.707	1	36.322	35.822	36.822	-0.38486								0	0	0	0.76967	1	13443	13443		1.0715	0.3738	1				3175	7	1552	1573	3148	3148					0.13491178398976444
AKKLFKKYIKL	11	Unmodified	_AKKLFKKYIKL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MSMS	HCT116MG_D190212_S1	1	690.4633178710938	2	690.46049	1378.90643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.416	1	62.416	61.916	62.916	0								0	0	0	0.96141	1	24101	24101		0.35063	0.35063	1		+		3176	10635	1553	1574	3149	3149					0.23213100143925658
AKKPIWKH	8	Unmodified	_AKKPIWKH_					0	0	0		PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant	PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant	PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	504.691162109375	2	504.311087	1006.60762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.903	1	49.903	49.403	50.403	0								0	0	0	0.8837	1	19027	19027		4.756	0.42677	1				3177	9793	1554	1575	3150	3150					0.10458067021932038
AKKPKATKAKK	11	Unmodified	_AKKPKATKAKK_					0	0	0			REV__HIST1H1E|p.A178T|1|0.14|ENSG00000168298|chr6:26156922-26156922|G/A|missense_variant	REV__HIST1H1E|p.A178T|1|0.14|ENSG00000168298|chr6:26156922-26156922|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	600.00732421875	2	599.90334	1197.79213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.055	1	49.891	49.391	50.391	-0.16369								0	0	0	0.95343	1	19175	19175		4.5289	2.0304	1		+		3178	16886	1555	1576	3151	3151					0.20114210381802877
AKKQRQPG	8	Unmodified	_AKKQRQPG_					0	0	0			REV__nc|ENSG00000145864|P47870-3|GABRB2	REV__nc|ENSG00000145864|P47870-3|GABRB2	MULTI-MSMS	HCT116MG_D190212_S1	1	456.77239990234375	2	456.772326	911.530098	-0.086499	-3.951E-05	0.62612	0.00028599	0.53962	0.00024648	456.7725790034996	48.383	1.858	48.383	47.789	49.647	0					57	35	2	0	0	0	0.83066	1	18760	18760		7.9102	1.187	1	4944200000	+		3179	12464	1556	1577	3152	3152					0.07079429085752054
AKKQRQPG	8	Unmodified	_AKKQRQPG_					0	0	0			REV__nc|ENSG00000145864|P47870-3|GABRB2	REV__nc|ENSG00000145864|P47870-3|GABRB2	MULTI-MSMS	HCT116MG_D190212_S2	2	912.5381469726562	1	912.537375	911.530098	0.76185	0.00069521	0.17157	0.00015656	0.93342	0.00085178	912.5373697947631	48.811	0.55649	48.668	48.49	49.046	-0.1437					22	10	3	0	0	0	0.83066	1	18641	18641		7.9102	0.62092	1	371120000	+		3180	12464	1556	1577	3153	3153					0.07079429085752054
AKKQRQPG	8	Unmodified	_AKKQRQPG_					0	0	0			REV__nc|ENSG00000145864|P47870-3|GABRB2	REV__nc|ENSG00000145864|P47870-3|GABRB2	MULTI-MSMS	HCT116MG_D190212_S4	4	456.7723083496094	2	456.772326	911.530098	0.1677	7.6602E-05	0.40139	0.00018334	0.56909	0.00025994	456.77231693910875	51.131	0.88174	50.777	50.42	51.301	-0.35483					28	16	2	0	0	0	0.85329	1	19008	19008		4.756	2.1785	1	3689100	+		3181	12464	1556	1577	3154	3154					0.07079429085752054
AKKQRQPG	8	Unmodified	_AKKQRQPG_					0	0	0			REV__nc|ENSG00000145864|P47870-3|GABRB2	REV__nc|ENSG00000145864|P47870-3|GABRB2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	912.537375	911.530098	0.76185	0.00069521	0.17157	0.00015656	0.93342	0.00085178	912.5373697947631	48.811	0.55649	48.668	48.49	49.046	-0.1437	0.14254	-2.0558E-05	NaN	7.9102	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371120000	+		3182	12464	1556	1577							0.07079429085752054
AKKYMEKYY	9	Unmodified	_AKKYMEKYY_					0	0	0		tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	612.7744750976562	2	612.310092	1222.60563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.287	1	40.287	39.787	40.787	0								0	0	0	0.76655	1	15138	15138		13.042	2.2185	1				3183	18606	1557	1578	3155	3155					0.003232254311797078
AKLKKVKKKRR	11	Unmodified	_AKLKKVKKKRR_					0	0	0		INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant;INO80|p.R1318Gfs*6|1|0.16|ENSG00000128908|chr15:40984322-40984322|T/-|frameshift_variant;ENSG00000128908|ENST00000648947|INO80	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	INO80|p.R874Ifs*42|1|0.05|ENSG00000128908|chr15:41048233-41048234|-/AT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	691.9938354492188	2	691.993355	1381.97216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.258	1	24.883	24.383	25.383	-0.37521								0	0	0	0.96157	1	9088	9088		0.26902	0.26902	1				3184	3017	1558	1579	3156	3156					0.29644934109478527
AKLLVVLVL	9	Unmodified	_AKLLVVLVL_					0	0	0			REV__nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	REV__nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	MSMS	HCT116MG_D190212_S1	1	484.3479919433594	2	484.349346	966.684139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.847	1	61.847	61.347	62.347	0								0	0	0	0.77008	1	23871	23871		0.6015	0	1		+		3185	17324	1559	1580	3157	3157					0.1994644579855276
AKLWKRLEIF	10	Unmodified	_AKLWKRLEIF_					0	0	0			REV__nc|ENSG00000185917|Q9NVD3-2|SETD4	REV__nc|ENSG00000185917|Q9NVD3-2|SETD4	MSMS	HCT116MG_D190212_S1	1	652.3956909179688	2	652.39789	1302.78123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.007	1	60.007	59.507	60.507	0								0	0	0	0.96911	1	23124	23124		0.45834	0.057624	1		+		3186	13863	1560	1581	3158	3158					0.1419480800755082
AKMKELRKVL	10	Unmodified	_AKMKELRKVL_					0	0	0			REV__ENST00000478958.5_1_2:238678415-238688172:+|nuORF	REV__ENST00000478958.5_1_2:238678415-238688172:+|nuORF	MSMS	HCT116MG_D190212_S1	1	608.3549194335938	2	608.383926	1214.7533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.948	1	57.948	57.448	58.448	0								0	0	0	0.96453	1	22309	22309		1.4819	0	1		+		3187	11800	1561	1582	3159	3159					0.15451161755822795
AKNALGPV	8	Unmodified	_AKNALGPV_					0	0	0			REV__ENST00000409226.5_1_2:201676959-201677028:+|nuORF	REV__ENST00000409226.5_1_2:201676959-201677028:+|nuORF	MSMS	HCT116MG_D190212_S1	1	385.2305908203125	2	385.231971	768.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.664	1	41.664	41.164	42.164	0								0	0	0	0.8837	1	15694	15694		2.5775	0.27475	1		+		3188	15433	1562	1583	3160	3160					0.05590148042870169
AKNFRRIKVT	10	Unmodified	_AKNFRRIKVT_					0	0	0			REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-MSMS	HCT116MG_D190212_S2	2	616.8822631835938	2	616.882939	1231.75132	0.46913	0.0002894	-0.54972	-0.00033911	-0.080587	-4.9713E-05	616.8822605661426	59.724	0.2979	59.564	59.343	59.641	-0.16012					6	5	2	0	0	0	0.88823	1	23130	23130		1.4819	0.15237	1	9492300	+		3189	13279	1563	1584	3161	3161					0.1447186906218576
AKPALEDLR	9	Unmodified	_AKPALEDLR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	HCT116MG_D190212_S1	1	506.7936096191406	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.151	1	29.151	28.651	29.651	0								0	0	0	0.19683	1	10643	10643		47.594	9.4188	1				3190	2597	1564	1585	3162	3162					0.06597145334558263
AKPALEDLR	9	Unmodified	_AKPALEDLR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	506.7928466796875	2	506.792924	1011.57129	0.41488	0.00021026	-0.11708	-5.9334E-05	0.2978	0.00015092	506.79278653375536	29.607	0.26093	29.37	29.187	29.448	-0.23655					9	4	3	0	0	0	0.23993	1	10766	10766		37.075	8.5801	1	16896000			3191	2597	1564	1585	3163	3163					0.06597145334558263
AKPALEDLR	9	Unmodified	_AKPALEDLR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	HCT116MG_D190212_S4	4	506.7929992675781	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.796	1	29.447	28.947	29.947	-0.34921								0	0	0	0.11662	1	10775	10775		53.404	9.6316	1				3192	2597	1564	1585	3164	3164					0.06597145334558263
AKPHIKRT	8	Unmodified	_AKPHIKRT_					0	0	0		ENST00000573886.5_1_17:4620541-4621453:+|nuORF	ENST00000573886.5_1_17:4620541-4621453:+|nuORF	ENST00000573886.5_1_17:4620541-4621453:+|nuORF	MSMS	HCT116MG_D190212_S2	2	475.7983703613281	2	475.798343	949.582134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.842	1	60.693	60.193	61.193	-0.14852								0	0	0	0.8837	1	23556	23556		0.79363	0	1				3193	8910	1565	1586	3165	3165					0.10532592499498605
AKPKPQKVKEI	11	Unmodified	_AKPKPQKVKEI_					0	0	0		nc|ENSG00000163075|Q4G0U5-3|CFAP221;nc|ENSG00000163075|Q4G0U5-2|CFAP221;ENST00000413057.6_1_2:120317267-120388537:+|nuORF;ENSG00000163075|ENST00000413369|CFAP221	nc|ENSG00000163075|Q4G0U5-3|CFAP221	nc|ENSG00000163075|Q4G0U5-3|CFAP221	MSMS	HCT116MG_D190212_S2	2	633.15234375	2	633.40063	1264.78671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.452	1	48.308	47.808	48.808	-0.1437								0	0	0	0.94755	1	18512	18512		7.609	3.0801	1				3194	4578	1566	1587	3166	3166					0.16490486799375503
AKPKTRIVRA	10	Unmodified	_AKPKTRIVRA_					0	0	0			REV__ENST00000433104.2_1_3:48731651-48732212:-|nuORF	REV__ENST00000433104.2_1_3:48731651-48732212:-|nuORF	MSMS	HCT116MG_D190212_S2	2	570.6685791015625	2	570.372207	1138.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.429	1	48.285	47.785	48.785	-0.1437								0	0	0	0.93202	1	18502	18502		8.7454	1.1365	1		+		3195	15594	1567	1588	3167	3167					0.16604484033496192
AKPRGRAQQP	10	Unmodified	_AKPRGRAQQP_					0	0	0		ENST00000480549.5_1_1:36784746-36785403:+|nuORF	ENST00000480549.5_1_1:36784746-36785403:+|nuORF	ENST00000480549.5_1_1:36784746-36785403:+|nuORF	MSMS	HCT116MG_D190212_S2	2	369.8765563964844	3	370.215984	1107.62612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.532	1	20.152	19.652	20.652	-0.37949								0	0	0	0.95511	1	7180	7180		3.5871	0	1				3196	8245	1568	1589	3168	3168					0.0766157692582965
AKQVSIIAT	9	Unmodified	_AKQVSIIAT_					0	0	0			REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	465.7845764160156	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.598	1	29.598	29.098	30.098	0								0	0	0	0.76603	1	10824	10824		14.838	4.0143	1		+		3197	17932	1569	1590	3169	3169					0.08698644448622872
AKREKWRKAY	10	Unmodified	_AKREKWRKAY_					0	0	0			REV__nc|ENSG00000260916|Q9ULG6-4|CCPG1	REV__nc|ENSG00000260916|Q9ULG6-4|CCPG1	MSMS	HCT116MG_D190212_S1	1	668.3850708007812	2	668.385845	1334.75714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.764	1	21.764	21.264	22.264	0								0	0	0	0.95648	1	7673	7673		3.2813	0.28607	1		+		3198	17313	1570	1591	3170	3170					0.10314967573913236
AKRKFKETLR	10	Unmodified	_AKRKFKETLR_					0	0	0		nc|ENSG00000117013|P56696-2|KCNQ4;ENSG00000117013|ENST00000347132|KCNQ4;nc|ENSG00000185760|Q9NR82-5|KCNQ5;nc|ENSG00000185760|Q9NR82-2|KCNQ5;ENSG00000185760|ENST00000370398|KCNQ5;nc|ENSG00000185760|Q9NR82-7|KCNQ5;nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000185760|Q9NR82-6|KCNQ5	nc|ENSG00000117013|P56696-2|KCNQ4	nc|ENSG00000117013|P56696-2|KCNQ4	MULTI-MSMS	HCT116MG_D190212_S2	2	638.8958129882812	2	638.896046	1275.77754	0.56463	0.00036074	-1.056	-0.00067464	-0.49132	-0.0003139	638.8952591119113	59.569	0.4075	59.409	59.285	59.693	-0.16012					12	8	2	0	0	0	0.89248	1	23076	23076		0.45834	0	1	9917900			3199	2553	1571	1592	3171	3171					0.15068138233687023
AKRKWGRPRKK	11	Unmodified	_AKRKWGRPRKK_					0	0	0		RFX5|p.R466W|1|0.17|ENSG00000143390|chr1:151342641-151342641|G/A|missense_variant	RFX5|p.R466W|1|0.17|ENSG00000143390|chr1:151342641-151342641|G/A|missense_variant	RFX5|p.R466W|1|0.17|ENSG00000143390|chr1:151342641-151342641|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	705.9506225585938	2	705.949479	1409.8844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.178	1	51.832	51.332	52.332	-0.34538								0	0	0	0.95636	1	19443	19443		2.9952	1.3426	1				3200	18100	1572	1593	3172	3172					0.1958573323870496
AKSCGSNA	8	Unmodified	_AKSCGSNA_					0	0	0			REV__LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant	REV__LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	737.3258666992188	1	737.324664	736.317388	0.69756	0.00051433	-0.38122	-0.00028109	0.31634	0.00023324	737.3242424338567	62.313	1.3132	62.313	62.144	63.457	0					51	32	2	0	0	0	0.87576	2	24060	24060;24300		0.79363	0	1	3021200	+		3201	13254	1573	1594	3173;3174	3173					-0.061318250364138294
AKSCGSNA	8	Unmodified	_AKSCGSNA_					0	0	0			REV__LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant	REV__LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	737.324664	736.317388	1.0615	0.00078268	-0.67411	-0.00049704	0.3874	0.00028564	737.3240538401461	62.419	1.1202	62.283	61.786	62.906	-0.13585	-0.014995	-0.00010048	NaN	0.79363	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2328400	+		3202	13254	1573	1594							-0.061318250364138294
AKSKKVPLSK	10	Unmodified	_AKSKKVPLSK_					0	0	0		nc|ENSG00000138336|Q8NFU7-4|TET1;TET1|p.K776Nfs*19|2|0.36|ENSG00000138336|chr10:68645052-68645052|A/-|frameshift_variant;TET1|p.K775Lfs*23|1|0.07|ENSG00000138336|chr10:68645051-68645052|-/TTAGTTAC|frameshift_variant;nc|ENSG00000138336|Q8NFU7-3|TET1;TET1|p.N1409Tfs*2|1|0.24|ENSG00000138336|chr10:68646950-68646950|A/-|frameshift_variant;ENSG00000138336|ENST00000373644|TET1	nc|ENSG00000138336|Q8NFU7-4|TET1	nc|ENSG00000138336|Q8NFU7-4|TET1	MULTI-MSMS	HCT116MG_D190212_S1	1	543.3563232421875	2	543.355691	1084.69683	0.42109	0.0002288	0.95575	0.00051931	1.3768	0.00074812	543.35615948673	58.641	0.30596	58.641	58.514	58.82	0					9	5	2	0	0	0	0.88076	1	22625	22625		3.2813	1.2216	1	22157000			3203	3550	1574	1595	3175	3175					0.1578685719080113
AKTGGGKG	8	Unmodified	_AKTGGGKG_					0	0	0		tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	tr|U7T8D7|U7T8D7_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00019PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	675.3810424804688	1	675.378414	674.371138	0.59621	0.00040266	2.0905	0.0014119	2.6867	0.0018145	675.3797888514365	44.114	0.47479	44.114	43.936	44.41	0					10	8	2	0	0	0	0.87685	1	16694	16694		0.6015	0.6015	1	17609000			3204	18653	1575	1596	3176	3176					0.02092715457615668
AKWMRLYKKRL	11	Unmodified	_AKWMRLYKKRL_					0	0	0			REV__MYO5A|p.R790W|1|0.22|ENSG00000197535|chr15:52376399-52376399|G/A|missense_variant	REV__MYO5A|p.R790W|1|0.22|ENSG00000197535|chr15:52376399-52376399|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	746.9515380859375	2	746.950298	1491.88604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.456	1	14.536	14.036	15.036	0.079683								0	0	0	0.96149	1	4655	4655		0.30703	0	1		+		3205	17051	1576	1597	3177	3177					0.15977606212436513
ALAAALQP	8	Unmodified	_ALAAALQP_					0	0	0			REV__ENSG00000129932|ENST00000427575|DOHH	REV__ENSG00000129932|ENST00000427575|DOHH	MSMS	HCT116MG_D190212_S4	4	377.72528076171875	2	377.726521	753.438489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.916	1	38.534	38.034	39.034	-0.38163								0	0	0	0.8837	1	14280	14280		0.79363	0	1		+		3206	10664	1577	1598	3178	3178					0.05190745668551244
ALAAELVVAA	10	Unmodified	_ALAAELVVAA_					0	0	0			REV__nc|ENSG00000168061|A6NKF1-2|SAC3D1	REV__nc|ENSG00000168061|A6NKF1-2|SAC3D1	MSMS	HCT116MG_D190212_S2	2	464.2793273925781	2	464.279118	926.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.305	1	38.212	37.712	38.712	-0.09301								0	0	0	0.78574	1	14386	14386		30.637	1.555	1		+		3207	13183	1578	1599	3179	3179					0.07747242074310634
ALAAGQRR	8	Unmodified	_ALAAGQRR_					0	0	0			REV__NCAN|p.M504Wfs*14|1|0.14|ENSG00000130287|chr19:19226917-19226917|G/-|frameshift_variant	REV__NCAN|p.M504Wfs*14|1|0.14|ENSG00000130287|chr19:19226917-19226917|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	421.259521484375	2	421.751393	841.488233	-0.10334	-4.3584E-05	0.053472	2.2552E-05	-0.049869	-2.1032E-05	421.751338342516	49	0.61909	49	48.46	49.079	0					17	11	2	0	0	0	0.33109	1	18655	18655		5.2307	0.90143	1	52669000	+		3208	11911	1579	1600	3180	3180					0.06114873397223164
ALAAKIAAVLK	11	Unmodified	_ALAAKIAAVLK_					0	0	0			REV__ENSG00000178980|ENST00000601048|SELENOW	REV__ENSG00000178980|ENST00000601048|SELENOW	MSMS	HCT116MG_D190212_S1	1	356.9092712402344	3	356.909498	1067.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.358	1	11.358	10.858	11.858	0								0	0	0	0.96208	1	3568	3568		0	0	1		+		3209	13620	1580	1601	3181	3181					0.17552045196134713
ALAASVPCGLL	11	Unmodified	_ALAASVPCGLL_					0	0	0		FOXG1|p.S393L|1|0.18|ENSG00000176165|chr14:28768457-28768457|C/T|missense_variant	FOXG1|p.S393L|1|0.18|ENSG00000176165|chr14:28768457-28768457|C/T|missense_variant	FOXG1|p.S393L|1|0.18|ENSG00000176165|chr14:28768457-28768457|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	507.787841796875	2	507.786253	1013.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.652	1	51.652	51.152	52.152	0								0	0	0	0.82946	1	19740	19740		29.082	3.6823	1				3210	9164	1581	1602	3182	3182					0.05171571230960126
ALADGIKSFLL	11	Unmodified	_ALADGIKSFLL_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-MSMS	HCT116MG_D190212_S1	1	574.8318481445312	2	574.339707	1146.66486	0.35228	0.00020233	-1.7549	-0.0010079	-1.4026	-0.00080557	574.3372729960171	56.919	0.20796	56.919	56.789	56.997	0					6	3	2	0	0	0	0.2731	1	21877	21877		67.081	30.954	1	3843900			3211	2020	1582	1603	3183	3183					0.09739444716979051
ALADGIKSFLL	11	Unmodified	_ALADGIKSFLL_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-MSMS	HCT116MG_D190212_S2	2	574.831787109375	2	574.339707	1146.66486	0.44138	0.0002535	0.075036	4.3096E-05	0.51642	0.0002966	574.339791858473	57.1	0.20721	56.921	56.792	56.999	-0.17904					5	3	2	0	0	0	0.047716	1	22029	22029		98.73	50.981	1	5585100			3212	2020	1582	1603	3184	3184					0.09739444716979051
ALADIAQSQL	10	Unmodified	_ALADIAQSQL_					0	0	0		ENSG00000152944|ENST00000282892|MED21	ENSG00000152944|ENST00000282892|MED21	ENSG00000152944|ENST00000282892|MED21	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2827758789062	2	515.282389	1028.55022	0.30184	0.00015553	-0.060941	-3.1402E-05	0.2409	0.00012413	515.2823814465914	45.193	0.2095	45.1	44.943	45.153	-0.092472					6	3	2	0	0	0	0.1448	1	17200	17200		65.235	25.285	1	20270000			3213	4168	1583	1604	3185	3185					0.03709135235044414
ALADIVWRA	9	Unmodified	_ALADIVWRA_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	HCT116MG_D190212_S2	2	507.7903137207031	2	507.790184	1013.56581	0.47927	0.00024337	-0.61995	-0.00031481	-0.14068	-7.1437E-05	507.7897556850618	51.787	0.35888	51.603	51.321	51.68	-0.18369					8	6	2	0	0	0	0.16306	1	19907	19907		45.7	22.551	1	22756000			3214	2060	1584	1605	3186	3186					0.05957466542736256
ALAEALKEV	9	Unmodified	_ALAEALKEV_					0	0	0		ENST00000437111.1_1_10:52389508-52390123:-|nuORF;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	472.2769775390625	2	472.276575	942.538597	0.34341	0.00016219	0.50069	0.00023646	0.8441	0.00039865	472.27664387683507	41.451	0.20477	41.383	41.293	41.498	-0.068199					5	3	2	0	0	0	0.016412	1	15685	15685		100.09	42.369	1	22911000			3215	3881	1585	1606	3187	3187					0.06502938211701803
ALAEALKEV	9	Unmodified	_ALAEALKEV_					0	0	0		ENST00000437111.1_1_10:52389508-52390123:-|nuORF;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	MSMS	HCT116MG_D190212_S3	3	472.2769470214844	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.692	1	41.389	40.889	41.889	-0.30257								0	0	0	0.01225	1	15509	15509		103.42	34.315	1				3216	3881	1585	1606	3188	3188					0.06502938211701803
ALAEALKEV	9	Unmodified	_ALAEALKEV_					0	0	0		ENST00000437111.1_1_10:52389508-52390123:-|nuORF;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	MSMS	HCT116MG_D190212_S3	3	472.27667236328125	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.753	1	41.45	40.95	41.95	-0.30257								0	0	0	0.040848	1	15533	15533		72.968	1.0457	1				3217	3881	1585	1606	3189	3189					0.06502938211701803
ALAEIHQI	8	Unmodified	_ALAEIHQI_					0	0	0			REV__nc|ENSG808|P60509|ERVPABLB-1	REV__nc|ENSG808|P60509|ERVPABLB-1	MULTI-MSMS	HCT116MG_D190212_S2	2	447.755859375	2	447.75581	893.497067	0.12947	5.7971E-05	-0.084435	-3.7806E-05	0.045035	2.0165E-05	447.7556641630625	45.374	0.20609	45.281	45.205	45.411	-0.092472					5	3	2	0	0	0	0.41924	1	17288	17288		48.346	1.425	1	10226000	+		3218	17335	1586	1607	3190	3190					0.04605802243054313
ALAEKFKEL	9	Unmodified	_ALAEKFKEL_					0	0	0		nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	MULTI-MSMS	HCT116MG_D190212_S2	2	524.7929077148438	2	524.8055	1047.59645	0.41722	0.00021896	-0.37571	-0.00019717	0.041511	2.1785E-05	524.805254583451	36.83	0.20586	36.716	36.602	36.808	-0.11478					9	3	3	0	0	0	0.025331	2	13767	13767;13816		91.085	28.512	1	30506000			3219	2849	1587	1608	3191;3192	3191					0.07455200137133033
ALAEKFKEL	9	Unmodified	_ALAEKFKEL_					0	0	0		nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	MULTI-MATCH	HCT116MG_D190212_S1	1		2	524.8055	1047.59645	0.16059	8.4278E-05	0.50532	0.00026519	0.66591	0.00034947	524.8058160992339	36.86	0.15546	36.86	36.731	36.886	0	0.072383	0.00038772	NaN	91.085	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8686100			3220	2849	1587	1608							0.07455200137133033
ALAFLVLMP	9	Unmodified	_ALAFLVLMP_					0	0	0		ENST00000572785.1_1_15:74474685-74474796:-|nuORF;ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6	ENST00000572785.1_1_15:74474685-74474796:-|nuORF	ENST00000572785.1_1_15:74474685-74474796:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	487.7908630371094	2	487.790807	973.56706	0.24209	0.00011809	0.095659	4.6662E-05	0.33775	0.00016475	487.79076182041064	45.494	1.7551	45.402	44.683	46.439	-0.092472					63	33	2	0	0	0	0.63193	1	17094	17094		9.3474	9.3474	1	50057000			3221	3512	1588	1609	3193	3193					0.0792196458729677
ALAGVSFEI	9	Unmodified	_ALAGVSFEI_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-SECPEP	HCT116MG_D190212_S1	1	906.543212890625	1	906.49311	905.485833	0.79595	0.00072153	0.45425	0.00041178	1.2502	0.0011333	906.4938724834091	56.196	0.15422	56.196	56.119	56.273	0					4	2	2	0	0	0	0.016345	1	21626	21626		97.075	29.731	1	7552000			3222	1882;1899	1589	1610	3194	3194					0.029309801489034726
ALAHLVPT	8	Unmodified	_ALAHLVPT_					0	0	0		NLRC5|p.G450Wfs*105|2|0.23|ENSG00000140853|chr16:57026283-57026284|-/C|frameshift_variant	NLRC5|p.G450Wfs*105|2|0.23|ENSG00000140853|chr16:57026283-57026284|-/C|frameshift_variant	NLRC5|p.G450Wfs*105|2|0.23|ENSG00000140853|chr16:57026283-57026284|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	411.7271423339844	2	411.247621	820.480688	-0.18199	-7.4841E-05	0.49768	0.00020467	0.3157	0.00012983	411.2477272579705	23.229	0.312	22.844	22.674	22.986	-0.3852					9	5	3	0	0	0	0.30658	1	8266	8266		6.3541	0	1	30646000			3223	9697	1590	1611	3195	3195					0.06326721076936792
ALAKHLIKI	9	Unmodified	_ALAKHLIKI_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	HCT116MG_D190212_S2	2	503.8421936035156	2	503.84222	1005.66989	0.36676	0.00018479	0.22053	0.00011111	0.58729	0.0002959	503.84208540404956	32.354	0.20766	32.124	31.995	32.202	-0.23009					6	3	2	0	0	0	0.055677	1	11987	11987		71.922	19.654	1	22035000			3224	1911	1591	1612	3196	3196					0.16727793370273503
ALAPGLPTA	9	Unmodified	_ALAPGLPTA_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	HCT116MG_D190212_S1	1	810.4727172851562	1	810.47198	809.464704	0.66451	0.00053857	0.015893	1.2881E-05	0.6804	0.00055145	810.471930919063	42.265	0.25975	42.265	42.123	42.383	0					8	4	2	0	0	0	0.0093514	1	15935	15935		114.94	33.08	1	15961000			3225	2585	1592	1613	3197	3197					0.05235014840036456
ALAPGLPTA	9	Unmodified	_ALAPGLPTA_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	HCT116MG_D190212_S2	2	810.4740600585938	1	810.47198	809.464704	0.86766	0.00070322	0.070115	5.6826E-05	0.93778	0.00076004	810.4718598469185	42.354	0.57047	42.284	41.963	42.534	-0.069473					23	10	3	0	0	0	0.0093514	1	15980	15980		114.94	28.822	1	106850000			3226	2585	1592	1613	3198	3198					0.05235014840036456
ALAPGLPTA	9	Unmodified	_ALAPGLPTA_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	HCT116MG_D190212_S3	3	810.4727783203125	1	810.47198	809.464704	0.99905	0.0008097	0.044354	3.5948E-05	1.0434	0.00084565	810.4718643764253	42.536	0.52145	42.232	41.935	42.457	-0.30352					20	9	3	0	0	0	0.0059651	1	15810	15810		129.2	47.336	1	26543000			3227	2585	1592	1613	3199	3199					0.05235014840036456
ALAPGLPTA	9	Unmodified	_ALAPGLPTA_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	HCT116MG_D190212_S4	4	810.473388671875	1	810.47198	809.464704	0.91165	0.00073887	0.43364	0.00035146	1.3453	0.0010903	810.4722436811328	42.586	0.46169	42.21	41.942	42.404	-0.37565					13	8	2	0	0	0	0.012635	1	15649	15649		106.85	24.981	1	7276900			3228	2585	1592	1613	3200	3200					0.05235014840036456
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	HCT116MG_D190212_S2	2	427.2664794921875	2	427.266345	852.518136	0.17741	7.5802E-05	0.025861	1.1049E-05	0.20327	8.6852E-05	427.2662940556908	32.01	0.41496	31.78	31.631	32.046	-0.23009					11	7	2	0	0	0	0.1037	1	11851	11851		57.471	6.6163	1	14774000			3229	2837	1593	1614	3201	3201					0.08597812342554789
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MATCH	HCT116MG_D190212_S3	3		2	427.266345	852.518136	0.010388	4.4384E-06	-0.18771	-8.0201E-05	-0.17732	-7.5762E-05	427.26634838807786	32	0.20781	31.721	31.63	31.838	-0.27841	-0.029445	-4.4316E-05	NaN	57.471	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6090300			3230	2837	1593	1614							0.08597812342554789
ALAPHLDDA	9	Unmodified	_ALAPHLDDA_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	HCT116MG_D190212_S3	3	461.73516845703125	2	461.735074	921.455596	0.2703	0.00012481	0.36541	0.00016872	0.63572	0.00029353	461.73532143696616	32.246	0.4166	31.968	31.786	32.202	-0.27841					10	7	2	0	0	0	0.21251	1	11831	11831		39.957	1.8061	1	3994600			3231	4721	1594	1615	3202	3202					-0.008273785163055436
ALAPHLDDA	9	Unmodified	_ALAPHLDDA_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	461.735074	921.455596	0.23912	0.00011041	-0.12875	-5.9448E-05	0.11037	5.096E-05	461.73504994359484	32.007	0.46683	31.776	31.631	32.098	-0.23009	-0.095629	-0.00013779	NaN	39.957	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7736000			3232	4721	1594	1615							-0.008273785163055436
ALAPIWIF	8	Unmodified	_ALAPIWIF_					0	0	0		ENST00000488498.2_1_1:156377231-156377309:-|nuORF	ENST00000488498.2_1_1:156377231-156377309:-|nuORF	ENST00000488498.2_1_1:156377231-156377309:-|nuORF	MSMS	HCT116MG_D190212_S4	4	465.7778625488281	2	465.776014	929.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.121	1	51.776	51.276	52.276	-0.34538								0	0	0	0.8837	1	19420	19420		2.8892	0	1				3233	8318	1595	1616	3203	3203					0.06988768633459586
ALASGLSVLL	10	Unmodified	_ALASGLSVLL_					0	0	0			REV__ENST00000528108.1_1_11:74907538-74911433:+|nuORF	REV__ENST00000528108.1_1_11:74907538-74911433:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	472.2943420410156	2	472.294768	942.574983	0.1152	5.4409E-05	-0.54702	-0.00025835	-0.43182	-0.00020395	472.2944470027653	49.879	0.20635	49.879	49.75	49.957	0					5	3	2	0	0	0	0.17848	1	19041	19041		61.357	3.6355	1	16435000	+		3234	12176	1596	1617	3204	3204					0.10139815108436778
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	462.76104736328125	2	462.761092	923.507631	-0.63709	-0.00029482	0.11013	5.0962E-05	-0.52696	-0.00024386	462.7609983805694	38.358	0.31298	38.358	38.227	38.54	0					12	5	3	0	0	0	0.0063744	1	14366	14366		125.62	58.281	1	28634000			3235	951	1597	1618	3205	3205					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	462.7611389160156	2	462.761092	923.507631	0.10891	5.0399E-05	0.060943	2.8202E-05	0.16985	7.8601E-05	462.7610476023748	38.388	0.42083	38.295	38.115	38.536	-0.09301					12	7	2	0	0	0	0.0054498	1	14408	14408		133.7	52.089	1	153580000			3236	951	1597	1618	3206	3206					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	924.5157470703125	1	924.514908	923.507631	0.8615	0.00079647	0.037971	3.5105E-05	0.89947	0.00083157	924.5146229234814	38.374	0.20697	38.281	38.167	38.374	-0.09301					5	3	2	0	0	0	0.004194	1	14439	14439		147.83	50.757	1	13112000			3237	951	1597	1618	3207	3207					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	462.7611999511719	2	462.761092	923.507631	0.23375	0.00010817	0.12771	5.9098E-05	0.36145	0.00016727	462.76105220188117	38.627	0.41668	38.326	38.196	38.613	-0.30137					18	7	4	0	0	0	0.0063744	1	14316	14316		125.62	58.281	1	64929000			3238	951	1597	1618	3208	3208					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	462.7612609863281	2	462.761092	923.507631	-0.063824	-2.9535E-05	0.50837	0.00023525	0.44455	0.00020572	462.761213641856	38.743	0.30217	38.362	38.187	38.489	-0.38163					12	5	3	0	0	0	0.0063744	1	14213	14213		125.62	58.281	1	22506000			3239	951	1597	1618	3209	3209					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	924.514908	923.507631	0.72844	0.00067345	-0.3295	-0.00030463	0.39894	0.00036882	924.5145093822395	38.68	0.15649	38.378	38.248	38.404	-0.30137	0.048544	-1.8868E-05	NaN	147.83	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2612500			3240	951	1597	1618							0.04281784897466423
ALASVIKEL	9	Unmodified	_ALASVIKEL_					0	0	0		ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	MULTI-SECPEP	HCT116MG_D190212_S2	2	472.275390625	2	472.294768	942.574983	-0.029003	-1.3698E-05	0.95647	0.00045173	0.92746	0.00043804	472.2951647311347	50.043	0.30618	49.88	49.636	49.942	-0.16369					9	5	3	0	0	0	0.0037269	1	19169	19169		125.53	17.532	1	28422000			3241	2786	1598	1619	3210	3210					0.10139815108436778
ALASVIKEL	9	Unmodified	_ALASVIKEL_					0	0	0		ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	472.294768	942.574983	0.1152	5.4409E-05	-0.54702	-0.00025835	-0.43182	-0.00020395	472.2944470027653	49.879	0.20635	49.879	49.75	49.957	0	-0.000398	-0.00039318	NaN	125.53	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16435000			3242	2786	1598	1619							0.10139815108436778
ALASVIMGL	9	Unmodified	_ALASVIMGL_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	HCT116MG_D190212_S1	1	874.5067138671875	1	874.506651	873.499375	0.63334	0.00055386	-0.17714	-0.00015491	0.4562	0.00039895	874.5064244383034	57.8	0.15524	57.8	57.671	57.826	0					4	2	2	0	0	0	0.072989	1	22258	22258		63.563	9.9873	1	35913000			3243	2013	1599	1620	3211	3211					0.057565146565139
ALASVIMGL	9	Unmodified	_ALASVIMGL_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	HCT116MG_D190212_S2	2	874.507080078125	1	874.506651	873.499375	0.92155	0.0008059	-0.055	-4.8098E-05	0.86655	0.0007578	874.5065459831029	57.984	0.15701	57.809	57.678	57.835	-0.17494					6	2	3	0	0	0	0.02256	1	22400	22400		93.883	12.019	1	56407000			3244	2013	1599	1620	3212	3212					0.057565146565139
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	483.2921447753906	2	483.292559	964.570566	0.20759	0.00010033	-0.22309	-0.00010782	-0.015497	-7.4894E-06	483.2923845173924	45.223	0.25998	45.223	45.087	45.347	0					10	4	3	0	0	0	0.0044301	1	17144	17144		144.35	62.737	1	59446000			3245	588	1600	1621	3213	3213					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	483.2925109863281	2	483.292559	964.570566	0.21161	0.00010227	0.083437	4.0324E-05	0.29505	0.00014259	483.2924896926409	45.271	0.46624	45.179	44.996	45.462	-0.092472					22	8	4	0	0	0	0.0034906	1	17212	17212		158.2	72.846	1	386200000			3246	588	1600	1621	3214	3214					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2935485839844	2	483.292559	964.570566	0.24324	0.00011755	0.75467	0.00036472	0.9979	0.00048228	483.292866327024	45.538	0.26105	45.227	45.044	45.305	-0.31094					10	4	3	0	0	0	0.0034906	1	17035	17035		158.2	61.918	1	28801000			3247	588	1600	1621	3215	3215					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	483.292559	964.570566	0.18152	8.7727E-05	-0.0017653	-8.5315E-07	0.17975	8.6874E-05	483.2927772824249	45.594	0.15088	45.221	45.143	45.294	-0.37266	0.0087305	-0.00022079	NaN	158.2	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5016900			3248	588	1600	1621							0.08686350685502475
ALAWQQSL	8	Unmodified	_ALAWQQSL_					0	0	0		ENSG00000136492|ENST00000259008|BRIP1;nc|ENSG00000136492|Q9BX63-2|BRIP1;BRIP1|p.I504Nfs*7|1|0.53|ENSG00000136492|chr17:61784387-61784388|-/T|frameshift_variant	ENSG00000136492|ENST00000259008|BRIP1	ENSG00000136492|ENST00000259008|BRIP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	459.2797546386719	2	458.747985	915.481417	0.031926	1.4646E-05	-0.44823	-0.00020563	-0.41631	-0.00019098	458.7475812130546	43.454	0.15535	43.381	43.252	43.407	-0.073376					4	2	2	0	0	0	0.31111	1	16484	16484		10.183	0	1	5864000			3249	3419	1601	1622	3216	3216					0.020295157259852203
ALCPFQGNF	9	Unmodified	_ALCPFQGNF_					0	0	0		CEMIP|p.E181*|1|0.27|ENSG00000103888|chr15:80881052-80881053|-/T|frameshift_variant;CEMIP|p.F180Lfs*44|1|0.29|ENSG00000103888|chr15:80881053-80881053|T/-|frameshift_variant;nc|ENSG00000103888|Q8WUJ3-2|CEMIP;ENSG00000103888|ENST00000394685|CEMIP	CEMIP|p.E181*|1|0.27|ENSG00000103888|chr15:80881052-80881053|-/T|frameshift_variant	CEMIP|p.E181*|1|0.27|ENSG00000103888|chr15:80881052-80881053|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	498.7323913574219	2	498.73402	995.453487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.65	1	26.289	25.789	26.789	-0.36164								0	0	0	0.32721	1	9651	9651		38.151	2.0242	1				3250	399	1602	1623	3217	3217					-0.0444213052574014
ALDDFSISV	9	Unmodified	_ALDDFSISV_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	MULTI-MSMS	HCT116MG_D190212_S2	2	966.4784545898438	1	966.477854	965.470577	0.62654	0.00060553	-0.031468	-3.0414E-05	0.59507	0.00057512	966.4775320334204	55.283	0.20311	55.095	54.968	55.171	-0.18797					6	3	2	0	0	0	0.14972	1	21332	21332		48.346	14.243	1	44394000			3251	3320	1603	1624	3218	3218					-0.013539314389504398
ALDDMISTL	9	Unmodified	_ALDDMISTL_					0	0	0		CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;nc|ENSG00000163468|P49368-2|CCT3	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	978.4810791015625	1	978.481224	977.473948	0.72274	0.00070719	-0.23532	-0.00023026	0.48742	0.00047693	978.4808670453248	55.643	0.20733	55.457	55.327	55.535	-0.18565					7	3	3	0	0	0	0.065014	1	21463	21463		67.344	12.57	1	52496000			3252	365	1604	1625	3219	3219					-0.01569004656596462
ALDDYEHHY	9	Unmodified	_ALDDYEHHY_					0	0	0		ENST00000482153.1_1_10:135122453-135123793:+|nuORF;ENSG00000198546|ENST00000361518|ZNF511;nc|ENSG00000198546|Q8NB15-1|ZNF511	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MSMS	HCT116MG_D190212_S1	1	581.7551879882812	2	581.743628	1161.4727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.701	1	27.701	27.201	28.201	0								0	0	0	0.023185	1	10063	10063		88.904	59.822	1				3253	6238	1605	1626	3220	3220					-0.10157502701144949
ALDDYEHHY	9	Unmodified	_ALDDYEHHY_					0	0	0		ENST00000482153.1_1_10:135122453-135123793:+|nuORF;ENSG00000198546|ENST00000361518|ZNF511;nc|ENSG00000198546|Q8NB15-1|ZNF511	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MSMS	HCT116MG_D190212_S1	1	388.1647644042969	3	388.164844	1161.4727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.801	1	27.801	27.301	28.301	0								0	0	0	0.46961	1	10103	10103		21.537	18.694	1				3254	6238	1605	1626	3221	3221					-0.10157502701144949
ALDDYEHHY	9	Unmodified	_ALDDYEHHY_					0	0	0		ENST00000482153.1_1_10:135122453-135123793:+|nuORF;ENSG00000198546|ENST00000361518|ZNF511;nc|ENSG00000198546|Q8NB15-1|ZNF511	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	581.7439575195312	2	581.743628	1161.4727	0.48656	0.00028306	-2.3841	-0.0013869	-1.8975	-0.0011039	581.7429415665811	28.074	0.20717	27.744	27.615	27.822	-0.32987					7	3	3	0	0	0	0.016134	1	10233	10233		100.37	71.885	1	33298000			3255	6238	1605	1626	3222	3222					-0.10157502701144949
ALDEAQGVGL	10	Unmodified	_ALDEAQGVGL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1;SF3B1|p.F815Lfs*19|1|0.14|ENSG00000115524|chr2:197401451-197401451|A/-|frameshift_variant	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	HCT116MG_D190212_S2	2	972.5009155273438	1	972.499652	971.492375	0.65235	0.00063441	0.46031	0.00044765	1.1127	0.0010821	972.500227035812	42.058	0.25959	41.99	41.861	42.12	-0.068199					6	4	2	0	0	0	0.28726	1	15947	15947		51.63	15.124	1	13772000			3256	2471	1606	1627	3223	3223					0.005488733096171927
ALDEKLLNI	9	Unmodified	_ALDEKLLNI_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	514.8029174804688	2	514.802957	1027.59136	0.27744	0.00014283	-0.26197	-0.00013486	0.015475	7.9665E-06	514.8027155658056	50.39	0.57454	50.218	50.087	50.662	-0.1719					15	10	2	0	0	0	0.0035631	1	19320	19320		173.69	47.12	1	119620000			3257	594	1607	1628	3224	3224					0.0786689627452688
ALDENGNLWY	10	Unmodified	_ALDENGNLWY_					0	0	0		ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1	ENSG00000205356|ENST00000447648|TECPR1	ENSG00000205356|ENST00000447648|TECPR1	MULTI-MSMS	HCT116MG_D190212_S2	2	597.7752685546875	2	597.774928	1193.5353	0.70388	0.00042076	0.0067481	4.0339E-06	0.71063	0.0004248	597.7749751739158	52.775	0.41279	52.587	52.347	52.759	-0.18753					18	7	3	0	0	0	0.072876	2	20265	20265;20275		103.35	103.35	1	27593000			3258	6382	1608	1629	3225;3226	3225					-0.053723566329381356
ALDENGNLWY	10	Unmodified	_ALDENGNLWY_					0	0	0		ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1	ENSG00000205356|ENST00000447648|TECPR1	ENSG00000205356|ENST00000447648|TECPR1	MULTI-MSMS	HCT116MG_D190212_S3	3	597.775146484375	2	597.774928	1193.5353	0.72941	0.00043602	-0.19605	-0.0001172	0.53336	0.00031883	597.7746408640837	52.92	0.47033	52.613	52.404	52.875	-0.3064					17	8	3	0	0	0	0.048437	1	20011	20011		114.65	85.567	1	9461600			3259	6382	1608	1629	3227	3227					-0.053723566329381356
ALDENGNLWY	10	Unmodified	_ALDENGNLWY_					0	0	0		ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1	ENSG00000205356|ENST00000447648|TECPR1	ENSG00000205356|ENST00000447648|TECPR1	MSMS	HCT116MG_D190212_S4	4	597.7748413085938	2	597.774928	1193.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.015	1	52.678	52.178	53.178	-0.33646								0	0	0	0.90072	1	19781	19781		24.021	13.197	1				3260	6382	1608	1629	3228	3228					-0.053723566329381356
ALDESHNQNL	10	Unmodified	_ALDESHNQNL_					0	0	0		ENST00000517360.1_1_5:171471888-171480055:-|nuORF;ENSG00000072786|ENST00000176763|STK10	ENST00000517360.1_1_5:171471888-171480055:-|nuORF	ENST00000517360.1_1_5:171471888-171480055:-|nuORF	MSMS	HCT116MG_D190212_S2	2	570.7677001953125	2	570.767634	1139.52072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.613	1	25.244	24.744	25.744	-0.36914								0	0	0	0.88085	1	9231	9231		18.373	0.22675	1				3261	1275	1609	1630	3229	3229					-0.04346428781082068
ALDEYTSEL	9	Unmodified	_ALDEYTSEL_					0	0	0		nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1;ENST00000583309.1_1_19:18546312-18546668:-|nuORF;ENST00000582287.6_1_19:18545725-18546537:-|nuORF;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF	nc|ENSG00000105655|Q9NPH2-3|ISYNA1	nc|ENSG00000105655|Q9NPH2-3|ISYNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	1040.479736328125	1	1040.47825	1039.47097	0.90308	0.00093964	-0.21494	-0.00022364	0.68814	0.000716	1040.4776450961713	45	0.20939	44.907	44.787	44.996	-0.092472					5	3	2	0	0	0	0.19218	1	17135	17135		42.095	6.0504	1	10824000			3262	2021	1610	1631	3230	3230					-0.04718556509760674
ALDFQRGND	9	Unmodified	_ALDFQRGND_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	HCT116MG_D190212_S3	3	1035.4864501953125	1	1035.4854	1034.47812	0.63995	0.00066266	0.028356	2.9363E-05	0.66831	0.00069202	1035.4853608788828	29.039	0.41636	28.817	28.629	29.046	-0.22196					17	7	3	0	0	0	0.2853	1	10533	10533		32.305	32.305	1	32713000			3263	3164	1611	1632	3231	3231					-0.03773779118660059
ALDGGFQMHY	10	Unmodified	_ALDGGFQMHY_					0	0	0		ENSG00000255302|ENST00000530028|EID1;nc|ENSG00000255302|Q9Y6B2-2|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MSMS	HCT116MG_D190212_S1	1	569.7528076171875	2	569.752941	1137.49133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.312	1	44.312	43.812	44.812	0								0	0	0	0.84701	1	16762	16762		22.736	8.8302	1				3264	6603	1612	1633	3232	3232					-0.07191664330935055
ALDGGFQMHY	10	Unmodified	_ALDGGFQMHY_					0	0	0		ENSG00000255302|ENST00000530028|EID1;nc|ENSG00000255302|Q9Y6B2-2|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S2	2	569.75341796875	2	569.752941	1137.49133	0.16736	9.5355E-05	0.41428	0.00023604	0.58165	0.00033139	569.7531202141232	44.22	0.31327	44.141	43.967	44.281	-0.078373					13	5	3	0	0	0	0.12519	1	16797	16797		69.105	42.837	1	52548000			3265	6603	1612	1633	3233	3233					-0.07191664330935055
ALDGGFQMHY	10	Unmodified	_ALDGGFQMHY_					0	0	0		ENSG00000255302|ENST00000530028|EID1;nc|ENSG00000255302|Q9Y6B2-2|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	569.752941	1137.49133	0.19513	0.00011117	-0.11294	-6.4347E-05	0.082189	4.6827E-05	569.7528451913277	44.223	0.21516	44.223	44.088	44.304	0	0.040999	-0.00013727	NaN	69.105	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14829000			3266	6603	1612	1633							-0.07191664330935055
ALDGKIYEL	9	Unmodified	_ALDGKIYEL_					0	0	0		ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant	ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	511.28155517578125	2	511.281857	1020.54916	0.27817	0.00014222	-0.20784	-0.00010626	0.070332	3.5959E-05	511.28168321487817	45.772	0.25637	45.671	45.505	45.761	-0.1014					8	4	2	0	0	0	0.022505	1	17405	17405		93.938	19.009	1	46899000			3267	177	1613	1634	3234	3234					0.039709208661292905
ALDGKIYEL	9	Unmodified	_ALDGKIYEL_					0	0	0		ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ARHGAP5|p.F892Lfs*9|2|0.33|ENSG00000100852|chr14:32093339-32093339|T/-|frameshift_variant;ARHGAP5|p.S936*|1|0.32|ENSG00000100852|chr14:32093468-32093469|-/T|frameshift_variant;ARHGAP5|p.F935Lfs*5|1|0.32|ENSG00000100852|chr14:32093469-32093469|T/-|frameshift_variant;ARHGAP5|p.N943Kfs*10|1|0.43|ENSG00000100852|chr14:32093489-32093490|-/A|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant	ARHGAP5|p.E893*|2|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	511.281857	1020.54916	0.45986	0.00023512	0.015195	7.7691E-06	0.47506	0.00024289	511.2818626005265	45.739	0.1579	45.739	45.607	45.765	0	0.03399	6.6437E-05	NaN	93.938	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12477000			3268	177	1613	1634							0.039709208661292905
ALDGRETDFY	10	Unmodified	_ALDGRETDFY_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	HCT116MG_D190212_S1	1	593.7724609375	2	593.772385	1185.53022	-0.051413	-3.0528E-05	0.21278	0.00012634	0.16136	9.5812E-05	593.7720703794635	38.525	0.26072	38.525	38.384	38.644	0					7	4	2	0	0	0	0.027082	1	14426	14426		107.56	61.864	1	11253000			3269	3834	1614	1635	3235	3235					-0.05512660495583077
ALDGRETDFY	10	Unmodified	_ALDGRETDFY_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	HCT116MG_D190212_S2	2	593.7726440429688	2	593.772385	1185.53022	0.57441	0.00034107	0.18898	0.00011221	0.76338	0.00045328	593.772523451292	38.55	0.37204	38.466	38.278	38.65	-0.084618					12	6	3	0	0	0	0.027082	1	14490	14490		107.56	73.162	1	63604000			3270	3834	1614	1635	3236	3236					-0.05512660495583077
ALDGRETDFY	10	Unmodified	_ALDGRETDFY_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	HCT116MG_D190212_S3	3	593.7723999023438	2	593.772385	1185.53022	0.48486	0.0002879	0.25872	0.00015362	0.74358	0.00044152	593.7724736556613	38.784	0.31276	38.482	38.248	38.561	-0.30137					8	5	2	0	0	0	0.055088	1	14388	14388		83.429	54.347	1	8202400			3271	3834	1614	1635	3237	3237					-0.05512660495583077
ALDGRETDFY	10	Unmodified	_ALDGRETDFY_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MATCH	HCT116MG_D190212_S4	4		2	593.772385	1185.53022	0.81358	0.00048308	1.0488	0.00062275	1.8624	0.0011058	593.7727998602766	38.922	0.20271	38.54	38.388	38.591	-0.38163	0.037156	0.00092457	NaN	107.56	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1133200			3272	3834	1614	1635							-0.05512660495583077
ALDLGSRRPL	10	Unmodified	_ALDLGSRRPL_					0	0	0			REV__ENST00000392627.5_1_17:72443273-72443525:+|nuORF	REV__ENST00000392627.5_1_17:72443273-72443525:+|nuORF	MSMS	HCT116MG_D190212_S3	3	549.3231811523438	2	549.324922	1096.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.783	1	31.513	31.013	32.013	-0.27028								0	0	0	0.93854	1	11624	11624		7.2892	2.0586	1		+		3273	15313	1615	1636	3238	3238					0.0908392549151813
ALDQFQEKY	9	Unmodified	_ALDQFQEKY_					0	0	0		nc|ENSG00000033178|A0AVT1-3|UBA6;ENSG00000033178|ENST00000322244|UBA6;ENST00000429659.7_1_4:68528855-68528909:-|nuORF	nc|ENSG00000033178|A0AVT1-3|UBA6	nc|ENSG00000033178|A0AVT1-3|UBA6	MULTI-MSMS	HCT116MG_D190212_S2	2	571.2801513671875	2	571.279846	1140.54514	0.78453	0.00044818	0.29347	0.00016765	1.078	0.00061584	571.2801741662861	36.008	0.25816	35.88	35.709	35.967	-0.12799					8	4	3	0	0	0	0.13316	1	13474	13474		51.63	18.844	1	19918000			3274	974	1616	1637	3239	3239					-0.019511686275791362
ALDQFQEKY	9	Unmodified	_ALDQFQEKY_					0	0	0		nc|ENSG00000033178|A0AVT1-3|UBA6;ENSG00000033178|ENST00000322244|UBA6;ENST00000429659.7_1_4:68528855-68528909:-|nuORF	nc|ENSG00000033178|A0AVT1-3|UBA6	nc|ENSG00000033178|A0AVT1-3|UBA6	MULTI-MATCH	HCT116MG_D190212_S1	1		2	571.279846	1140.54514	0.45225	0.00025836	0.31745	0.00018135	0.76971	0.00043972	571.2800038634069	35.955	0.20844	35.955	35.837	36.046	0	0.037491	8.4923E-06	NaN	51.63	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5577100			3275	974	1616	1637							-0.019511686275791362
ALDSDEIRQL	10	Unmodified	_ALDSDEIRQL_					0	0	0			REV__nc|ENSG00000105784|Q96NL0-3|RUNDC3B	REV__nc|ENSG00000105784|Q96NL0-3|RUNDC3B	MULTI-SECPEP	HCT116MG_D190212_S2	2	386.8683166503906	3	387.203299	1158.58807	-0.059888	-2.3189E-05	-1.9288	-0.00074682	-1.9886	-0.00077001	387.2026662868013	30.956	0.20744	30.689	30.508	30.716	-0.26704					5	3	2	0	0	0	0.30784	1	11404	11404		7.4771	0	1	12688000	+		3276	11274	1617	1638	3240	3240					0.015116014298428126
ALDSHILDY	9	Unmodified	_ALDSHILDY_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-MSMS	HCT116MG_D190212_S1	1	523.7611083984375	2	523.761289	1045.50803	0.36731	0.00019238	-0.33615	-0.00017606	0.031164	1.6323E-05	523.761054398175	45.212	0.26102	45.212	45.034	45.295	0					10	4	3	0	0	0	0.0035556	1	17131	17131		172.91	111.55	1	38849000			3277	3264	1618	1639	3241	3241					-0.012908401733284336
ALDSHILDY	9	Unmodified	_ALDSHILDY_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-MSMS	HCT116MG_D190212_S2	2	523.7616577148438	2	523.761289	1045.50803	0.43427	0.00022745	-0.38321	-0.00020071	0.051056	2.6741E-05	523.7611293815739	45.236	0.46727	45.144	44.943	45.411	-0.092472					17	8	3	0	0	0	0.0035556	1	17195	17195		172.91	108.67	1	110760000			3278	3264	1618	1639	3242	3242					-0.012908401733284336
ALDSHILDY	9	Unmodified	_ALDSHILDY_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-MSMS	HCT116MG_D190212_S3	3	523.7610473632812	2	523.761289	1045.50803	0.38622	0.00020229	-0.79385	-0.00041579	-0.40763	-0.0002135	523.7609571909371	45.433	0.20897	45.122	45.044	45.253	-0.31094					5	3	2	0	0	0	0.16144	1	17050	17050		46.021	31.183	1	2588000			3279	3264	1618	1639	3243	3243					-0.012908401733284336
ALDSHPTIV	9	Unmodified	_ALDSHPTIV_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	MSMS	HCT116MG_D190212_S1	1	476.75836181640625	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.912	1	34.912	34.412	35.412	0								0	0	0	1.3832E-05	1	12969	12969		147.83	80.487	1				3280	2483	1619	1640	3244	3244					0.0248548103485291
ALDSHPTIV	9	Unmodified	_ALDSHPTIV_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	MULTI-MSMS	HCT116MG_D190212_S2	2	476.75848388671875	2	476.758549	951.502546	0.30277	0.00014435	0.033096	1.5779E-05	0.33587	0.00016013	476.75849401149696	34.999	0.363	34.841	34.657	35.02	-0.15834					19	6	4	0	0	0	0.0034599	1	13042	13042		162.95	84.967	1	65261000			3281	2483	1619	1640	3245	3245					0.0248548103485291
ALDSHPTIV	9	Unmodified	_ALDSHPTIV_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	MULTI-MSMS	HCT116MG_D190212_S2	2	952.5111694335938	1	952.509822	951.502546	0.72913	0.0006945	0.79776	0.00075987	1.5269	0.0014544	952.510306384455	34.997	0.2588	34.839	34.657	34.916	-0.15834					6	4	2	0	0	0	0.003294	1	13067	13067		180.01	91.106	1	18986000			3282	2483	1619	1640	3246	3246					0.0248548103485291
ALDSHPTIV	9	Unmodified	_ALDSHPTIV_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	MULTI-MSMS	HCT116MG_D190212_S3	3	476.7586669921875	2	476.758549	951.502546	0.34467	0.00016433	-0.05263	-2.5092E-05	0.29204	0.00013923	476.7583832773819	35.178	0.31099	34.879	34.698	35.009	-0.29922					8	5	2	0	0	0	0.16144	1	12999	12999		46.021	17.534	1	8862300			3283	2483	1619	1640	3247	3247					0.0248548103485291
ALDSSSILY	9	Unmodified	_ALDSSSILY_					0	0	0		nc|ENSG00000121749|Q8TC07|TBC1D15;ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;ENST00000546932.5_1_12:72265915-72278641:+|nuORF;TBC1D15|p.W365Gfs*22|1|0.37|ENSG00000121749|chr12:71896727-71896727|T/-|frameshift_variant;TBC1D15|p.L440Ffs*8|1|0.12|ENSG00000121749|chr12:71907102-71907103|-/T|frameshift_variant	nc|ENSG00000121749|Q8TC07|TBC1D15	nc|ENSG00000121749|Q8TC07|TBC1D15	MULTI-MSMS	HCT116MG_D190212_S2	2	968.494384765625	1	968.493504	967.486227	0.97548	0.00094474	0.24396	0.00023627	1.2194	0.001181	968.4934995857689	47.794	0.25815	47.662	47.532	47.79	-0.13281					7	4	2	0	0	0	0.043314	1	18249	18249		77.984	17.595	1	28580000			3284	9440	1620	1641	3248	3248					0.0011835507810928902
ALDSSSILY	9	Unmodified	_ALDSSSILY_					0	0	0		nc|ENSG00000121749|Q8TC07|TBC1D15;ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;ENST00000546932.5_1_12:72265915-72278641:+|nuORF;TBC1D15|p.W365Gfs*22|1|0.37|ENSG00000121749|chr12:71896727-71896727|T/-|frameshift_variant;TBC1D15|p.L440Ffs*8|1|0.12|ENSG00000121749|chr12:71907102-71907103|-/T|frameshift_variant	nc|ENSG00000121749|Q8TC07|TBC1D15	nc|ENSG00000121749|Q8TC07|TBC1D15	MULTI-MSMS	HCT116MG_D190212_S3	3	968.493896484375	1	968.493504	967.486227	0.42755	0.00041408	0.19655	0.00019035	0.6241	0.00060443	968.4937094916694	47.978	0.26069	47.662	47.514	47.775	-0.31596					7	4	2	0	0	0	0.12335	1	18062	18062		53.576	9.1686	1	2617200			3285	9440	1620	1641	3249	3249					0.0011835507810928902
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	HCT116MG_D190212_S1	1	919.4381713867188	1	919.436717	918.429441	1.0947	0.0010065	0.19475	0.00017906	1.2895	0.0011856	919.4367508301178	28.19	0.31436	28.19	28.06	28.375	0					10	5	3	0	0	0	0.012168	1	10268	10268		108	42.762	1	16908000			3286	1908	1621	1642	3250	3250					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	HCT116MG_D190212_S2	2	919.4371948242188	1	919.436717	918.429441	0.74143	0.0006817	-0.062329	-5.7307E-05	0.6791	0.00062439	919.4365373532333	28.489	0.3095	28.159	27.977	28.287	-0.32987					9	5	2	0	0	0	0.020181	1	10394	10394		96.285	40.108	1	91527000			3287	1908	1621	1642	3251	3251					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	HCT116MG_D190212_S3	3	919.4366455078125	1	919.436717	918.429441	0.91099	0.00083759	0.01842	1.6936E-05	0.92941	0.00085453	919.4364973708275	28.513	0.78167	28.307	27.968	28.749	-0.20593					27	14	4	0	0	0	0.012168	1	10309	10309		108	42.762	1	51973000			3288	1908	1621	1642	3252	3252					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MSMS	HCT116MG_D190212_S3	3	460.22210693359375	2	460.221997	918.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.521	1	28.315	27.815	28.815	-0.20593								0	0	0	0.030973	1	10324	10324		81.613	37.755	1				3289	1908	1621	1642	3253	3253					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	HCT116MG_D190212_S4	4	919.4375610351562	1	919.436717	918.429441	0.71213	0.00065476	-0.16604	-0.00015267	0.54608	0.00050209	919.4365153289301	28.629	0.4672	28.298	28.116	28.583	-0.33138					12	8	3	0	0	0	0.020181	1	10306	10306		96.285	36.211	1	12647000			3290	1908	1621	1642	3254	3254					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	HCT116MG_D190212_S4	4	460.2222900390625	2	460.221997	918.429441	0.074909	3.4475E-05	0.80214	0.00036916	0.87704	0.00040363	460.22245006100707	28.614	0.2595	28.283	28.116	28.376	-0.33138					7	4	2	0	0	0	0.24895	1	10327	10327		36.127	17.981	1	4482900			3291	1908	1621	1642	3255	3255					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MATCH	HCT116MG_D190212_S2	2		2	460.221997	918.429441	0.14583	6.7112E-05	-0.17925	-8.2495E-05	-0.033426	-1.5383E-05	460.2218891263286	28.489	0.20609	28.159	28.029	28.236	-0.32987	-0.062057	-0.00021664	NaN	36.127	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12140000			3292	1908	1621	1642							-0.03303692478425546
ALDSTNVEL	9	Unmodified	_ALDSTNVEL_					0	0	0		ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	961.4833984375	1	961.483667	960.476391	0.58727	0.00056465	0.27085	0.00026042	0.85812	0.00082507	961.4837413829317	42.664	0.25715	42.664	42.538	42.795	0					11	4	3	0	0	0	0.027492	1	16099	16099		88.904	34.13	1	69529000			3293	3204	1622	1643	3256	3256					-0.005428329272717747
ALDSTNVEL	9	Unmodified	_ALDSTNVEL_					0	0	0		ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	961.7711181640625	1	961.483667	960.476391	0.91055	0.00087548	-0.11833	-0.00011377	0.79222	0.00076171	961.4834372632685	42.734	0.41336	42.664	42.481	42.895	-0.069984					20	7	4	0	0	0	0.012168	2	16236	16169;16236		108	43.761	1	251530000			3294	3204	1622	1643	3257;3258	3258					-0.005428329272717747
ALDSTNVEL	9	Unmodified	_ALDSTNVEL_					0	0	0		ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	481.2456359863281	2	481.245472	960.476391	0.50087	0.00024104	-0.37557	-0.00018074	0.1253	6.0302E-05	481.2452505568203	42.734	0.25971	42.664	42.481	42.741	-0.069984					10	4	3	0	0	0	0.007119	1	16184	16184		120.45	46.028	1	60923000			3295	3204	1622	1643	3259	3259					-0.005428329272717747
ALDSTNVEL	9	Unmodified	_ALDSTNVEL_					0	0	0		ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	961.484130859375	1	961.483667	960.476391	0.74359	0.00071495	0.16152	0.0001553	0.90511	0.00087024	961.4835118133644	42.942	0.30591	42.638	42.456	42.762	-0.30472					11	6	2	0	0	0	0.027492	1	15993	15993		88.904	28.83	1	38010000			3296	3204	1622	1643	3260	3260					-0.005428329272717747
ALDSTNVEL	9	Unmodified	_ALDSTNVEL_					0	0	0		ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	481.2460021972656	2	481.245472	960.476391	0.28641	0.00013783	0.16908	8.1368E-05	0.45549	0.0002192	481.24555605636226	42.942	0.28129	42.638	42.456	42.737	-0.30472					7	5	2	0	0	0	0.007119	1	16018	16018		120.45	45.521	1	19243000			3297	3204	1622	1643	3261	3261					-0.005428329272717747
ALDSTNVEL	9	Unmodified	_ALDSTNVEL_					0	0	0		ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	961.4838256835938	1	961.483667	960.476391	0.55441	0.00053306	0.22348	0.00021487	0.77789	0.00074793	961.4832768002245	43.001	0.16611	42.626	42.499	42.665	-0.37493					6	4	2	0	0	0	0.027492	1	15828	15828		88.904	40.558	1	6677100			3298	3204	1622	1643	3262	3262					-0.005428329272717747
ALDTKIGRY	9	Unmodified	_ALDTKIGRY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	HCT116MG_D190212_S1	1	518.79296875	2	518.792924	1035.57129	0.33966	0.00017622	-0.16128	-8.3671E-05	0.17838	9.2544E-05	518.7927951486151	29.815	0.36398	29.815	29.581	29.945	0					8	6	2	0	0	0	0.0096523	1	10914	10914		114.2	36.052	1	17888000			3299	4176	1623	1644	3263	3263					0.05493145334571636
ALDTKIGRY	9	Unmodified	_ALDTKIGRY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	HCT116MG_D190212_S2	2	518.79345703125	2	518.792924	1035.57129	-0.052509	-2.7241E-05	-0.25741	-0.00013354	-0.30991	-0.00016078	518.7926632597975	30.183	0.25818	29.899	29.77	30.028	-0.28453					10	4	3	0	0	0	0.0035381	1	11090	11090		171.09	70.715	1	125170000			3300	4176	1623	1644	3264	3264					0.05493145334571636
ALDTKIGRY	9	Unmodified	_ALDTKIGRY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	HCT116MG_D190212_S3	3	518.79345703125	2	518.792924	1035.57129	0.2861	0.00014842	0.20476	0.00010623	0.49086	0.00025465	518.7930180348616	30.241	0.20817	29.991	29.861	30.069	-0.24946					6	3	2	0	0	0	0.0043772	1	11022	11022		145.13	56.226	1	30705000			3301	4176	1623	1644	3265	3265					0.05493145334571636
ALDTSNVMV	9	Unmodified	_ALDTSNVMV_					0	0	0		nc|ENSG00000203485|Q27J81-3|INF2;INF2|p.V530Wfs*28|3|0.32|ENSG00000203485|chr14:104707848-104707848|C/-|frameshift_variant;INF2|p.P472Qfs*86|1|0.43|ENSG00000203485|chr14:104707676-104707676|C/-|frameshift_variant;INF2|p.P438Lfs*120|1|1.0|ENSG00000203485|chr14:104707576-104707576|C/-|frameshift_variant;INF2|p.G1056Afs*31|1|0.29|ENSG00000203485|chr14:104714323-104714323|C/-|frameshift_variant;INF2|p.G1212Dfs*19|1|0.9|ENSG00000203485|chr14:104714794-104714810|GGGGCCGGGCCTCAAAG/-|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	nc|ENSG00000203485|Q27J81-3|INF2	nc|ENSG00000203485|Q27J81-3|INF2	MULTI-MSMS	HCT116MG_D190212_S2	2	949.466064453125	1	949.465909	948.458632	0.61271	0.00058175	0.041596	3.9494E-05	0.6543	0.00062124	949.4656905184327	42.215	0.25856	42.146	42.016	42.274	-0.068199					6	4	2	0	0	0	0.016134	1	16001	16001		100.37	48.103	1	14135000			3302	6310	1624	1645	3266	3266					-0.017658714537901687
ALDTTRHEL	9	Unmodified	_ALDTTRHEL_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-MSMS	HCT116MG_D190212_S2	2	528.2779541015625	2	528.277638	1054.54072	0.68382	0.00036125	-0.43908	-0.00023196	0.24474	0.00012929	528.2773568547469	26.063	0.26052	25.695	25.552	25.812	-0.36719					8	4	2	0	0	0	0.066362	1	9431	9431		80.676	36.818	1	16489000			3303	3132	1625	1646	3267	3267					0.015633669495173308
ALECNDQAL	9	Unmodified	_ALECNDQAL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	HCT116MG_D190212_S2	2	488.7239990234375	2	488.723849	975.433146	0.34783	0.00016999	0.2688	0.00013137	0.61663	0.00030136	488.72388952952355	35.658	0.25699	35.515	35.386	35.643	-0.14245					6	4	2	0	0	0	0.1754	1	13341	13341		43.858	7.7313	1	14254000	+		3304	11803	1626	1647	3268	3268					-0.0555534597622227
ALECNDQAL	9	Unmodified	_ALECNDQAL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	HCT116MG_D190212_S3	3	488.7237548828125	2	488.723849	975.433146	0.17948	8.7718E-05	0.072936	3.5646E-05	0.25242	0.00012336	488.7239244715241	35.848	0.30978	35.548	35.42	35.729	-0.30042					11	6	2	0	0	0	0.1754	1	13234	13234		43.858	7.7313	1	12854000	+		3305	11803	1626	1647	3269	3269					-0.0555534597622227
ALECNDQAL	9	Unmodified	_ALECNDQAL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	488.723849	975.433146	0.34783	0.00016999	0.2688	0.00013137	0.61663	0.00030136	488.72388952952355	35.658	0.25699	35.515	35.386	35.643	-0.14245	-0.030739	6.4366E-05	NaN	43.858	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14254000	+		3306	11803	1626	1647							-0.0555534597622227
ALECNDQAL	9	Unmodified	_ALECNDQAL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	488.723849	975.433146	0.17948	8.7718E-05	0.072936	3.5646E-05	0.25242	0.00012336	488.7239244715241	35.848	0.30978	35.548	35.42	35.729	-0.30042	0.0019525	-0.00012709	NaN	43.858	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12854000	+		3307	11803	1626	1647							-0.0555534597622227
ALECNDQAL	9	Unmodified	_ALECNDQAL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	488.723849	975.433146	0.20272	9.9076E-05	0.36529	0.00017853	0.56802	0.0002776	488.72386420786273	35.961	0.20932	35.575	35.413	35.622	-0.38579	0.028787	0.00015868	NaN	43.858	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1940500	+		3308	11803	1626	1647							-0.0555534597622227
ALEEQHERE	9	Unmodified	_ALEEQHERE_					0	0	0		HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	570.7676391601562	2	570.767634	1139.52072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.197	1	25.197	24.697	25.697	0								0	0	0	0.69648	1	9053	9053		19.257	4.4187	1				3309	5269	1627	1648	3270	3270					-0.04346428781104805
ALENEVDQRLQ	11	Unmodified	_ALENEVDQRLQ_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-5|RUFY2	MSMS	HCT116MG_D190212_S3	3	657.8363037109375	2	657.836048	1313.65754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.34	1	36.04	35.54	36.54	-0.30042								0	0	0	0.84337	1	13424	13424		39.213	12.945	1		+		3310	14181	1628	1649	3271	3271					0.013260603786193315
ALEPIDITV	9	Unmodified	_ALEPIDITV_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;ENST00000414579.2_1_X:100057007-100057235:+|nuORF	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	HCT116MG_D190212_S2	2	970.5462646484375	1	970.545539	969.538263	0.62381	0.00060543	0.87865	0.00085277	1.5025	0.0014582	970.5460573143235	55.08	0.20337	54.892	54.765	54.968	-0.18797					7	3	3	0	0	0	0.016134	1	21228	21228		100.37	15.015	1	57121000			3311	4719	1629	1650	3272	3272					0.052275184918471496
ALFKAWAL	8	Unmodified	_ALFKAWAL_					0	0	0		ENSG00000137265|ENST00000380956|IRF4;nc|ENSG00000137265|Q15306-2|IRF4	ENSG00000137265|ENST00000380956|IRF4	ENSG00000137265|ENST00000380956|IRF4	MSMS	HCT116MG_D190212_S1	1	460.27484130859375	2	460.273638	918.532724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.986	1	38.986	38.486	39.486	0								0	0	0	0.8837	1	14612	14612		5.7604	1.0044	1				3312	3470	1630	1651	3273	3273					0.07019884490705408
ALFNGAQKL	9	Unmodified	_ALFNGAQKL_					0	0	0		ENST00000495368.1_1_10:12184516-12209761:+|nuORF;SEC61A2|p.A387Kfs*3|1|0.04|ENSG00000065665|chr10:12161111-12161114|CAGC/-|frameshift_variant;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	MSMS	HCT116MG_D190212_S1	1	481.27752685546875	2	481.276909	960.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.86	1	41.86	41.36	42.36	0								0	0	0	0.67173	1	15773	15773		20.454	3.5113	1				3313	1097	1631	1652	3274	3274					0.05741777651417124
ALFNGAQKL	9	Unmodified	_ALFNGAQKL_					0	0	0		ENST00000495368.1_1_10:12184516-12209761:+|nuORF;SEC61A2|p.A387Kfs*3|1|0.04|ENSG00000065665|chr10:12161111-12161114|CAGC/-|frameshift_variant;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	481.277099609375	2	481.276909	960.539266	0.32559	0.0001567	-0.028342	-1.364E-05	0.29725	0.00014306	481.27672604694186	41.747	0.31017	41.679	41.498	41.808	-0.068199					7	5	2	0	0	0	0.071351	1	15801	15801		64.236	22.142	1	21215000			3314	1097	1631	1652	3275	3275					0.05741777651417124
ALFNGAQKL	9	Unmodified	_ALFNGAQKL_					0	0	0		ENST00000495368.1_1_10:12184516-12209761:+|nuORF;SEC61A2|p.A387Kfs*3|1|0.04|ENSG00000065665|chr10:12161111-12161114|CAGC/-|frameshift_variant;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	481.276909	960.539266	0.44902	0.0002161	0.17127	8.243E-05	0.62029	0.00029853	481.2770834508333	41.784	0.20814	41.784	41.602	41.81	0	0.052478	0.00010397	NaN	64.236	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5986500			3315	1097	1631	1652							0.05741777651417124
ALFPERITV	9	Unmodified	_ALFPERITV_					0	0	0		nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1	nc|ENSG00000137343|Q5SQI0-5|ATAT1	nc|ENSG00000137343|Q5SQI0-5|ATAT1	MULTI-MSMS	HCT116MG_D190212_S1	1	523.3056030273438	2	523.305667	1044.59678	0.20332	0.0001064	-0.29809	-0.00015599	-0.094765	-4.9591E-05	523.3053143930632	51.014	0.31026	51.014	50.833	51.143	0					9	5	3	0	0	0	0.05892	1	19486	19486		70.332	18.064	1	30119000			3316	9472	1632	1653	3276	3276					0.07626619856978323
ALFPERITV	9	Unmodified	_ALFPERITV_					0	0	0		nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1	nc|ENSG00000137343|Q5SQI0-5|ATAT1	nc|ENSG00000137343|Q5SQI0-5|ATAT1	MULTI-MSMS	HCT116MG_D190212_S2	2	523.3056030273438	2	523.305667	1044.59678	0.35849	0.0001876	0.22959	0.00012015	0.58808	0.00030774	523.3057154449276	51.171	0.46478	50.992	50.758	51.223	-0.17868					15	8	3	0	0	0	0.011082	1	19624	19624		110.67	49.317	1	65734000			3317	9472	1632	1653	3277	3277					0.07626619856978323
ALFPGDVDRL	10	Unmodified	_ALFPGDVDRL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MSMS	HCT116MG_D190212_S2	2	551.7981567382812	2	551.798206	1101.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.586	1	50.414	49.914	50.914	-0.1719								0	0	0	0.77487	1	19389	19389		32.037	12.78	1				3318	1748	1633	1654	3278	3278					0.03513127989003806
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	HCT116MG_D190212_S1	1	527.8236083984375	2	527.824027	1053.6335	0.41207	0.0002175	0.74507	0.00039327	1.1571	0.00061077	527.8234444804027	52.789	0.20679	52.789	52.639	52.845	0					6	3	2	0	0	0	0.11731	1	20220	20220		54.774	33.027	1	16728000			3319	3109	1634	1655	3279	3279					0.10882916473565274
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	HCT116MG_D190212_S2	2	527.82421875	2	527.824027	1053.6335	0.35846	0.0001892	0.026635	1.4059E-05	0.38509	0.00020326	527.8239763998382	52.936	0.41381	52.747	52.604	53.018	-0.18922					16	7	3	0	0	0	0.0047811	1	20354	20354		139.54	97.449	1	35158000			3320	3109	1634	1655	3280	3280					0.10882916473565274
ALGDIREV	8	Unmodified	_ALGDIREV_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40;ENST00000507114.1_1_17:48777854-48785015:-|nuORF;ANKRD40|p.G147Afs*26|2|0.23|ENSG00000154945|chr17:50699737-50699737|C/-|frameshift_variant;ANKRD40|p.A157Cfs*33|1|0.33|ENSG00000154945|chr17:50699709-50699710|-/G|frameshift_variant	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	HCT116MG_D190212_S2	2	436.745361328125	2	436.745442	871.476331	0.041379	1.8072E-05	0.1519	6.6343E-05	0.19328	8.4415E-05	436.74537693900294	36.913	0.20629	36.798	36.705	36.912	-0.11478					7	3	3	0	0	0	0.068735	1	13835	13835		103.35	21.463	1	19566000			3321	4235	1635	1656	3281	3281					0.035452118633770624
ALGDQGPFGHN	11	Unmodified	_ALGDQGPFGHN_					0	0	0			REV__COL2A1|p.R515H|1|0.26|ENSG00000139219|chr12:47985949-47985949|C/T|missense_variant	REV__COL2A1|p.R515H|1|0.26|ENSG00000139219|chr12:47985949-47985949|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	557.2630615234375	2	556.759612	1111.50467	0.25179	0.00014019	0.096659	5.3816E-05	0.34845	0.000194	556.75957990304	20.812	0.62451	20.847	20.558	21.183	0.034473					25	11	4	0	0	0	0.70662	1	7110	7110		19.362	19.362	1	57387000	+		3322	10235	1636	1657	3282	3282					-0.046620902273161846
ALGGHPLLGV	10	Unmodified	_ALGGHPLLGV_					0	0	0		ENSG00000107984|ENST00000373970|DKK1	ENSG00000107984|ENST00000373970|DKK1	ENSG00000107984|ENST00000373970|DKK1	MULTI-MSMS	HCT116MG_D190212_S1	1	467.27935791015625	2	467.279452	932.544351	0.29606	0.00013834	0.38936	0.00018194	0.68542	0.00032028	467.2795833134808	45.686	0.41928	45.686	45.451	45.87	0					14	7	3	0	0	0	0.010802	1	17339	17339		144.51	84.714	1	23066000			3323	2141	1637	1658	3283	3283					0.07538081514042005
ALGGHPLLGV	10	Unmodified	_ALGGHPLLGV_					0	0	0		ENSG00000107984|ENST00000373970|DKK1	ENSG00000107984|ENST00000373970|DKK1	ENSG00000107984|ENST00000373970|DKK1	MULTI-MSMS	HCT116MG_D190212_S2	2	467.27923583984375	2	467.279452	932.544351	0.18875	8.8201E-05	0.029291	1.3687E-05	0.21804	0.00010189	467.27933311625304	45.683	0.61616	45.581	45.299	45.915	-0.1014					15	11	2	0	0	0	0.017315	1	17378	17378		126.52	66.73	1	65409000			3324	2141	1637	1658	3284	3284					0.07538081514042005
ALGKAALK	8	Unmodified	_ALGKAALK_					0	0	0			REV__FAM25A|p.E11K|1|0.17|ENSG00000188100|chr10:87020355-87020355|G/A|missense_variant	REV__FAM25A|p.E11K|1|0.17|ENSG00000188100|chr10:87020355-87020355|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	386.2565612792969	2	386.257988	770.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.092	1	45.779	45.279	46.279	-0.31237								0	0	0	0.8837	1	17276	17276		0.79363	0	1		+		3325	16808	1638	1659	3285	3285					0.10699311456596661
ALGKILSV	8	Unmodified	_ALGKILSV_					0	0	0		nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1;ENST00000496123.6_1_11:61571226-61578532:-|nuORF;nc|ENSG00000149485|O60427-2|FADS1	nc|ENSG00000149485|O60427|FADS1	nc|ENSG00000149485|O60427|FADS1	MULTI-MSMS	HCT116MG_D190212_S2	2	400.7655334472656	2	400.765646	799.516739	0.19126	7.6652E-05	-0.30474	-0.00012213	-0.11348	-4.5478E-05	400.76546600394624	44.75	0.31265	44.665	44.482	44.794	-0.084797					7	5	2	0	0	0	0.49192	1	17036	17036		41.84	3.8656	1	17905000			3326	4064	1639	1660	3286	3286					0.10896178253801736
ALGLKFLYLSL	11	Unmodified	_ALGLKFLYLSL_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	619.3800659179688	2	619.381374	1236.7482	0.52458	0.00032491	-2.2899	-0.0014183	-1.7653	-0.0010934	619.3794117773216	49.214	0.25833	49.214	49.079	49.337	0					11	4	3	0	0	0	0.73981	1	18788	18788		7.1017	0	1	36315000	+		3327	12304	1640	1661	3287	3287					0.1392918116484907
ALGLSEDLA	9	Unmodified	_ALGLSEDLA_					0	0	0		ENST00000568763.1_1_16:30197020-30197302:+|nuORF	ENST00000568763.1_1_16:30197020-30197302:+|nuORF	ENST00000568763.1_1_16:30197020-30197302:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	888.9735107421875	1	888.467289	887.460012	0.41084	0.00036501	1.4552	0.0012929	1.866	0.0016579	888.4689452795319	40.747	0.20565	40.747	40.64	40.846	0					5	3	2	0	0	0	0.17936	1	15363	15363		23.148	0	1	4629000			3328	8876	1641	1662	3288	3288					0.011780859066107041
ALGPRQVS	8	Unmodified	_ALGPRQVS_					0	0	0			REV__ENST00000569862.5_1_16:67865068-67866179:-|nuORF	REV__ENST00000569862.5_1_16:67865068-67866179:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	414.24017333984375	2	414.240327	826.466101	-0.12968	-5.3718E-05	0.45642	0.00018907	0.32674	0.00013535	414.24045471237577	26.811	0.365	26.459	26.241	26.606	-0.35254					10	6	2	0	0	0	0.31873	1	9710	9710		57.471	0	1	20882000	+		3329	11167	1642	1663	3289	3289					0.045926489288035555
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	HCT116MG_D190212_S1	1	414.2403869628906	2	414.240327	826.466101	0.030513	1.264E-05	0.043125	1.7864E-05	0.073638	3.0504E-05	414.24027190157653	26.387	0.20834	26.387	26.293	26.501	0					5	3	2	0	0	0	0.097615	1	9559	9559		58.679	1.2075	1	3629000			3330	1719	1643	1664	3290	3290					0.04592648928814924
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	414.240327	826.466101	-0.12968	-5.3718E-05	0.45642	0.00018907	0.32674	0.00013535	414.24045471237577	26.811	0.365	26.459	26.241	26.606	-0.35254	0.043098	0.00018381	NaN	58.679	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20882000			3331	1719	1643	1664							0.04592648928814924
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	414.240327	826.466101	0.16515	6.8411E-05	-0.027021	-1.1193E-05	0.13813	5.7218E-05	414.2403101535636	26.55	0.46839	26.401	26.203	26.671	-0.14924	-0.014854	-0.00021672	NaN	58.679	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6806500			3332	1719	1643	1664							0.04592648928814924
ALGSSGHCSGP	11	Unmodified	_ALGSSGHCSGP_					0	0	0		ENST00000392001.6_1_2:238499158-238499395:-|nuORF	ENST00000392001.6_1_2:238499158-238499395:-|nuORF	ENST00000392001.6_1_2:238499158-238499395:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	486.7898864746094	2	486.713816	971.413079	0.095401	4.6433E-05	0.79839	0.00038859	0.89379	0.00043502	486.7142356490024	22.588	0.20827	22.569	22.439	22.647	-0.018869					5	3	2	0	0	0	0.64329	1	7936	7936		30.637	7.4881	1	4990300			3333	7603	1644	1665	3291	3291					-0.07377096916172832
ALGTDAEGQKV	11	Unmodified	_ALGTDAEGQKV_					0	0	0		STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3;ENST00000472099.1_1_1:109338858-109339065:+|nuORF	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	544.7818603515625	2	544.782753	1087.55095	0.54338	0.00029602	-0.79473	-0.00043295	-0.25135	-0.00013693	544.7820113861441	24.856	0.20938	24.856	24.725	24.935	0					5	3	2	0	0	0	0.55234	1	8925	8925		40.725	8.4194	1	4734000			3334	2511	1645	1666	3292	3292					0.010679298841068885
ALGTDAEGQKV	11	Unmodified	_ALGTDAEGQKV_					0	0	0		STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3;ENST00000472099.1_1_1:109338858-109339065:+|nuORF	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	544.782753	1087.55095	0.56895	0.00030995	-0.36089	-0.00019661	0.20806	0.00011335	544.7827383406737	25.269	0.2599	24.894	24.712	24.972	-0.37521	0.019001	0.00014568	NaN	40.725	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15401000			3335	2511	1645	1666							0.010679298841068885
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	HCT116MG_D190212_S1	1	512.7875366210938	2	512.787307	1023.56006	0.4905	0.00025152	0.62707	0.00032155	1.1176	0.00057308	512.7874015474694	54.308	0.20422	54.308	54.179	54.384	0					11	3	4	0	0	0	0.065014	1	20827	20827		67.344	25.249	1	544280000			3336	2292	1646	1667	3293	3293					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7871704101562	2	512.787307	1023.56006	0.25723	0.00013191	0.46871	0.00024035	0.72594	0.00037225	512.7874953767839	54.518	0.30598	54.329	54.201	54.507	-0.1894					18	5	5	0	0	0	0.019399	1	20992	20992		97.075	29.731	1	1151100000			3337	2292	1646	1667	3294	3294					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	HCT116MG_D190212_S2	2	1024.56884765625	1	1024.56734	1023.56006	0.60073	0.00061549	0.62341	0.00063873	1.2241	0.0012542	1024.5679158708717	54.518	0.2035	54.329	54.201	54.405	-0.1894					7	3	3	0	0	0	0.026974	1	21017	21017		89.427	22.083	1	94400000			3338	2292	1646	1667	3295	3295					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	HCT116MG_D190212_S3	3	512.2418823242188	2	512.787307	1023.56006	0.16127	8.2698E-05	0.23125	0.00011858	0.39253	0.00020128	512.7873512109345	54.651	0.2092	54.355	54.243	54.452	-0.29587					5	3	2	0	0	0	0.19551	1	20740	20740		34.102	17.16	1	5872900			3339	2292	1646	1667	3296	3296					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1024.56734	1023.56006	0.96474	0.00098844	0.2513	0.00025747	1.216	0.0012459	1024.567641308773	54.308	0.1523	54.308	54.231	54.384	0	-0.010428	-0.0003759	NaN	89.427	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27390000			3340	2292	1646	1667							0.04922323240418791
ALHGCFRMT	9	Unmodified	_ALHGCFRMT_					0	0	0			REV__ENSG00000128482|ENST00000461366|RNF112	REV__ENSG00000128482|ENST00000461366|RNF112	MULTI-MSMS	HCT116MG_D190212_S2	2	1035.486572265625	1	1035.48627	1034.47899	0.53891	0.00055804	-0.60905	-0.00063066	-0.070135	-7.2623E-05	1035.4855319944545	29	0.35869	28.683	28.504	28.863	-0.31613					13	6	3	0	0	0	0.24973	1	10604	10604		36.044	0	1	128700000	+		3341	11873	1647	1668	3297	3297					-0.03686979274971236
ALIAYIKGK	9	Unmodified	_ALIAYIKGK_					0	0	0		tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	tr|U7SWE4|U7SWE4_FUSNUAminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01001PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	488.814697265625	2	488.813128	975.611703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.034	1	51.689	51.189	52.189	-0.34538								0	0	0	0.76902	1	19385	19385		4.3292	0	1				3342	18501	1648	1669	3298	3298					0.12292111725002997
ALIDEQIL	8	Unmodified	_ALIDEQIL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	HCT116MG_D190212_S2	2	914.5201416015625	1	914.519325	913.512048	0.68995	0.00063097	0.26677	0.00024396	0.95672	0.00087494	914.5195651417133	54.569	0.15238	54.379	54.303	54.456	-0.1894					4	2	2	0	0	0	0.19622	1	21038	21038		74.396	3.6808	1	18603000			3343	2642	1649	1670	3299	3299					0.05183249320384675
ALIEDEHNL	9	Unmodified	_ALIEDEHNL_					0	0	0		nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	MSMS	HCT116MG_D190212_S2	2	527.2637329101562	2	527.264196	1052.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.583	1	36.468	35.968	36.968	-0.11478								0	0	0	0.094105	1	13685	13685		57.722	21.595	1				3344	5380	1650	1671	3300	3300					-0.01031741661677188
ALIKPRRN	8	Unmodified	_ALIKPRRN_					0	0	0			REV__ENSG00000132763|ENST00000401061|MMACHC	REV__ENSG00000132763|ENST00000401061|MMACHC	MULTI-MSMS	HCT116MG_D190212_S2	2	484.3116455078125	2	484.311618	966.608683	0.23186	0.00011229	0.12439	6.0245E-05	0.35626	0.00017254	484.31167267374	60.804	0.98602	60.656	60.527	61.513	-0.14852					29	18	2	0	0	0	0.86564	1	23549	23549		2.5775	1.7838	1	36747000	+		3345	12001	1651	1672	3301	3301					0.12404281390831784
ALILGGWG	8	Unmodified	_ALILGGWG_					0	0	0			REV__ENSG00000184113|ENST00000618236|CLDN5	REV__ENSG00000184113|ENST00000618236|CLDN5	MULTI-MSMS	HCT116MG_D190212_S2	2	393.7287902832031	2	393.729064	785.443575	0.061806	2.4335E-05	-0.29807	-0.00011736	-0.23626	-9.3022E-05	393.7288460534188	42.369	0.25879	42.299	42.119	42.377	-0.069984					7	4	2	0	0	0	0.49217	1	16038	16038		41.817	9.3636	1	25296000	+		3346	13785	1652	1673	3302	3302					0.04227049531186822
ALILKAHPKS	10	Unmodified	_ALILKAHPKS_					0	0	0			REV__ENSG00000124766|ENST00000244745|SOX4	REV__ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S2	2	539.3425903320312	2	539.342584	1076.67061	0.54243	0.00029255	-0.13391	-7.2222E-05	0.40852	0.00022033	539.3423688896852	60.023	0.77184	59.869	59.492	60.264	-0.15441					18	14	2	0	0	0	0.88943	1	23235	23235		1.1933	0.59184	1	10153000	+		3347	11796	1653	1674	3303	3303					0.13534588019319926
ALIPMMPP	8	Unmodified	_ALIPMMPP_					0	0	0		ENST00000300403.10_1_20:30345217-30345373:+|nuORF	ENST00000300403.10_1_20:30345217-30345373:+|nuORF	ENST00000300403.10_1_20:30345217-30345373:+|nuORF	MSMS	HCT116MG_D190212_S3	3	435.23602294921875	2	435.23481	868.455067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.9836	1	3.0289	2.5289	3.5289	0.045237								0	0	0	0.8837	1	904	904		0.79363	0	1				3348	6993	1654	1675	3304	3304					0.015577872386529634
ALISRGRGARR	11	Unmodified	_ALISRGRGARR_					0	0	0			REV__ENST00000361545.9_1_7:73703847-73704045:+|nuORF	REV__ENST00000361545.9_1_7:73703847-73704045:+|nuORF	MSMS	HCT116MG_D190212_S1	1	606.760009765625	2	606.873437	1211.73232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.534	1	52.534	52.034	53.034	0								0	0	0	0.95636	1	20096	20096		2.9952	1.5133	1		+		3349	15094	1655	1676	3305	3305					0.13492332491159686
ALITAALYKL	10	Unmodified	_ALITAALYKL_					0	0	0		ENSG00000169896|ENST00000544665|ITGAM;nc|ENSG00000169896|P11215-2|ITGAM	ENSG00000169896|ENST00000544665|ITGAM	ENSG00000169896|ENST00000544665|ITGAM	MULTI-MSMS	HCT116MG_D190212_S1	1	538.8392944335938	2	538.839342	1075.66413	0.54952	0.0002961	-0.22647	-0.00012203	0.32304	0.00017407	538.8389957828989	46.803	0.2079	46.803	46.699	46.907	0					7	3	3	0	0	0	0.48137	1	17781	17781		36.506	0	1	15617000			3350	5099	1656	1677	3306	3306					0.12932650067932627
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000436947.1_1_2:43711555-43732871:-|nuORF;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MSMS	HCT116MG_D190212_S2	2	495.2610168457031	2	495.310752	988.606951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.102	1	55.919	55.419	56.419	-0.18261								0	0	0	0.036088	1	21641	21641		76.825	29.904	1				3351	2494	1657	1678	3307	3307					0.11219227582228086
ALKDKIEKA	9	Unmodified	_ALKDKIEKA_					0	0	0		ENST00000415545.2_1_1:92108345-92109332:+|nuORF;ENSG00000166598|ENST00000299767|HSP90B1	ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENST00000415545.2_1_1:92108345-92109332:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.3109130859375	2	508.310949	1014.60735	0.33289	0.00016921	-0.0030036	-1.5268E-06	0.32988	0.00016768	508.3108362308207	21.164	0.2081	20.781	20.651	20.859	-0.38288					5	3	2	0	0	0	0.41881	1	7463	7463		21.537	0	1	11657000			3352	7752	1658	1679	3308	3308					0.10062602511425212
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S1	1	493.7796325683594	2	493.779482	985.544411	0.26558	0.00013114	-0.13228	-6.5319E-05	0.1333	6.5818E-05	493.7794538554535	43.031	0.26004	43.031	42.9	43.16	0					11	4	4	0	0	0	0.0055242	1	16252	16252		133.05	33.297	1	30505000			3353	3198	1659	1680	3309	3309					0.051060367233731085
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MSMS	HCT116MG_D190212_S2	2	493.7796630859375	2	493.779482	985.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.056	1	42.982	42.482	43.482	-0.073376								0	0	0	3.4079E-05	1	16314	16314		145.13	34.455	1				3354	3198	1659	1680	3310	3310					0.051060367233731085
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S3	3	493.77972412109375	2	493.779482	985.544411	0.29459	0.00014546	-0.50577	-0.00024974	-0.21118	-0.00010427	493.77941438405423	43.239	0.17345	42.934	42.86	43.033	-0.30472					10	5	2	0	0	0	0.0043772	2	16131	16122;16131		145.13	34.455	1	8615500			3355	3198	1659	1680	3311;3312	3312					0.051060367233731085
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S4	4	493.7795104980469	2	493.779482	985.544411	0.22972	0.00011343	0.46391	0.00022907	0.69362	0.0003425	493.7796524998262	43.367	0.11724	42.993	42.929	43.046	-0.37433					9	5	2	0	0	0	0.012596	1	15943	15943		106.94	7.1849	1	4120400			3356	3198	1659	1680	3313	3313					0.051060367233731085
ALKEKVIKA	9	Unmodified	_ALKEKVIKA_					0	0	0		ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A	ENSG00000168906|ENST00000306434|MAT2A	ENSG00000168906|ENST00000306434|MAT2A	MULTI-MSMS	HCT116MG_D190212_S2	2	500.3318786621094	2	500.331685	998.648816	0.37109	0.00018567	0.025789	1.2903E-05	0.39688	0.00019857	500.3316534502176	21.165	0.15601	20.782	20.703	20.859	-0.38288					6	2	3	0	0	0	0.060947	1	7460	7460		69.338	13.161	1	15876000			3357	5037	1660	1681	3314	3314					0.1494378327075765
ALKKKEEV	8	Unmodified	_ALKKKEEV_					0	0	0			REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	472.7740478515625	2	472.792392	943.570232	0.47673	0.0002254	1.5691	0.00074188	2.0459	0.00096727	472.79181493261086	42.807	0.20773	42.737	42.585	42.793	-0.069981					5	3	2	0	0	0	0.30262	1	16226	16226		13.508	11.448	1	9527100	+		3358	13359	1661	1682	3315	3315					0.0961893096566655
ALKKLRKKLEL	11	Unmodified	_ALKKLRKKLEL_					0	0	0			REV__nc|ENSG00000169756|P48059|LIMS1	REV__nc|ENSG00000169756|P48059|LIMS1	MSMS	HCT116MG_D190212_S1	1	670.4639892578125	2	670.461022	1338.90749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.214	1	44.214	43.714	44.714	0								0	0	0	0.96141	1	16724	16724		0.35063	0.043601	1		+		3359	13262	1662	1683	3316	3316					0.25159314512825404
ALKMQVLKG	9	Unmodified	_ALKMQVLKG_					0	0	0		ENST00000608279.1_1_2:133104147-133104555:-|nuORF	ENST00000608279.1_1_2:133104147-133104555:-|nuORF	ENST00000608279.1_1_2:133104147-133104555:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	494.35260009765625	2	494.304613	986.594672	0.29442	0.00014553	2.8906	0.0014288	3.185	0.0015744	494.3058932534291	49.429	0.25706	49.429	49.235	49.492	0					7	4	2	0	0	0	0.65706	1	18803	18803		7.9102	0	1	16889000			3360	9125	1663	1684	3317	3317					0.10083867847538386
ALKRHLRSH	9	Unmodified	_ALKRHLRSH_					0	0	0		ENST00000535379.1_1_11:114107968-114121274:+|nuORF;nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16	ENST00000535379.1_1_11:114107968-114121274:+|nuORF	ENST00000535379.1_1_11:114107968-114121274:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	372.4761657714844	3	373.228224	1116.66284	-0.1482	-5.5312E-05	2.1928	0.0008184	2.0446	0.00076309	373.56350722742906	27.051	0.15999	26.698	26.606	26.766	-0.35254					4	2	2	0	0	0	0.26745	1	9786	9786		2.4985	2.4036	1	3191700			3361	2223	1664	1685	3318	3318					0.10917873542439338
ALKRKKKKKR	10	Unmodified	_ALKRKKKKKR_					0	0	0		KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1	KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant	KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	642.370361328125	2	642.459148	1282.90374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.153	1	19.153	18.653	19.653	0								0	0	0	0.96937	1	6626	6626		0.40072	0.40072	1				3362	1903	1665	1686	3319	3319					0.2736068952963251
ALLAGSEYL	9	Unmodified	_ALLAGSEYL_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D;ENST00000462641.1_1_22:36907036-36908721:-|nuORF	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	HCT116MG_D190212_S1	1	936.5046997070312	1	936.503674	935.496398	0.96173	0.00090066	0.011249	1.0535E-05	0.97298	0.0009112	936.503652925572	52.617	0.25694	52.617	52.485	52.742	0					10	4	3	0	0	0	0.017683	1	20144	20144		98.807	13.535	1	31268000			3363	1695	1666	1687	3320	3320					0.026069628033155823
ALLAGSEYL	9	Unmodified	_ALLAGSEYL_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D;ENST00000462641.1_1_22:36907036-36908721:-|nuORF	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	HCT116MG_D190212_S2	2	936.5037231445312	1	936.503674	935.496398	0.63286	0.00059268	0.21022	0.00019687	0.84308	0.00078955	936.5036847070774	52.87	0.36013	52.681	52.501	52.861	-0.18922					16	6	3	0	0	0	0.0093514	1	20314	20314		114.94	25.99	1	54469000			3364	1695	1666	1687	3321	3321					0.026069628033155823
ALLATLAAYL	10	Unmodified	_ALLATLAAYL_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	HCT116MG_D190212_S1	1	510.31060791015625	2	510.310418	1018.60628	0.44697	0.00022809	0.13683	6.9824E-05	0.58379	0.00029792	510.31040901600255	55.374	0.15365	55.374	55.298	55.452	0					6	2	3	0	0	0	0.019944	2	21286	21253;21286		120.45	13.51	1	153760000	+		3365	11857	1667	1688	3322;3323	3323					0.09772388142516775
ALLATLAAYL	10	Unmodified	_ALLATLAAYL_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.82244873046875	2	510.310418	1018.60628	0.44697	0.00022809	0.13683	6.9824E-05	0.58379	0.00029792	510.31040901600255	55.374	0.15365	55.374	55.298	55.452	0					6	2	3	0	0	0	0.077385	1	21253	21253		112.59	5.653	1	153760000	+		3366	11857	1667	1688	3324	3324					0.09772388142516775
ALLAYHRWN	9	Unmodified	_ALLAYHRWN_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MSMS	HCT116MG_D190212_S1	1	381.8747863769531	3	381.873447	1142.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1313	1	9.1313	8.6313	9.6313	0								0	0	0	0.77008	1	2764	2764		0.26902	0	1				3367	2496	1668	1689	3325	3325					0.03291673665626149
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	HCT116MG_D190212_S2	2	510.310546875	2	510.310418	1018.60628	0.35083	0.00017903	0.22634	0.00011551	0.57717	0.00029454	510.3104194298609	55.592	0.25917	55.406	55.276	55.535	-0.18565					12	4	4	0	0	0	0.0058997	1	21437	21437		129.77	9.3219	1	531900000			3368	5480	1669	1690	3326	3326					0.09772388142516775
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MATCH	HCT116MG_D190212_S3	3		2	510.310418	1018.60628	0.2233	0.00011395	-0.012365	-6.3099E-06	0.21093	0.00010764	510.3102179906376	55.619	0.16391	55.331	55.247	55.411	-0.28773	-0.039588	-0.00017626	NaN	129.77	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2247600			3369	5480	1669	1690							0.09772388142516775
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	HCT116MG_D190212_S2	2	493.3057861328125	2	493.305667	984.596781	0.29149	0.00014379	-0.57296	-0.00028264	-0.28147	-0.00013885	493.3053188901092	51.324	0.30896	51.145	50.966	51.275	-0.17868					9	5	2	0	0	0	0.056114	1	19691	19691		71.708	10.106	1	31372000			3370	4256	1670	1691	3327	3327					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MSMS	HCT116MG_D190212_S3	3	493.3055725097656	2	493.305667	984.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.528	1	51.216	50.716	51.716	-0.31166								0	0	0	0.067027	1	19457	19457		65.474	3.8718	1				3371	4256	1670	1691	3328	3328					0.10386619857001733
ALLDSNEPLVY	11	Unmodified	_ALLDSNEPLVY_					0	0	0		ACSL1|p.D79N|1|0.31|ENSG00000151726|chr4:184788692-184788692|C/T|missense_variant	ACSL1|p.D79N|1|0.31|ENSG00000151726|chr4:184788692-184788692|C/T|missense_variant	ACSL1|p.D79N|1|0.31|ENSG00000151726|chr4:184788692-184788692|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	617.3206176757812	2	617.321711	1232.62887	0.60116	0.00037111	-0.59549	-0.00036761	0.0056681	3.499E-06	617.321302577276	52.716	0.25774	52.716	52.536	52.794	0					8	4	2	0	0	0	0.69138	1	20158	20158		24.991	2.3329	1	86378000			3372	28	1671	1692	3329	3329					0.021859427494746342
ALLDSNEPLVY	11	Unmodified	_ALLDSNEPLVY_					0	0	0		ACSL1|p.D79N|1|0.31|ENSG00000151726|chr4:184788692-184788692|C/T|missense_variant	ACSL1|p.D79N|1|0.31|ENSG00000151726|chr4:184788692-184788692|C/T|missense_variant	ACSL1|p.D79N|1|0.31|ENSG00000151726|chr4:184788692-184788692|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	617.321711	1232.62887	0.60116	0.00037111	-0.59549	-0.00036761	0.0056681	3.499E-06	617.321302577276	52.716	0.25774	52.716	52.536	52.794	0	-0.094201	-0.00012617	NaN	24.991	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86378000			3373	28	1671	1692							0.021859427494746342
ALLDSNEPLVY	11	Unmodified	_ALLDSNEPLVY_					0	0	0		ACSL1|p.D79N|1|0.31|ENSG00000151726|chr4:184788692-184788692|C/T|missense_variant	ACSL1|p.D79N|1|0.31|ENSG00000151726|chr4:184788692-184788692|C/T|missense_variant	ACSL1|p.D79N|1|0.31|ENSG00000151726|chr4:184788692-184788692|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	617.321711	1232.62887	0.58735	0.00036259	-0.1135	-7.0068E-05	0.47385	0.00029252	617.3214323550532	53.207	0.26175	52.904	52.773	53.035	-0.30305	0.094201	0.00046891	NaN	24.991	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3284300			3374	28	1671	1692							0.021859427494746342
ALLEMDARL	9	Unmodified	_ALLEMDARL_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	HCT116MG_D190212_S1	1	516.2814331054688	2	516.281334	1030.54812	0.24771	0.00012789	0.8893	0.00045913	1.137	0.00058702	516.2814256716119	50.058	0.25735	50.058	49.905	50.162	0					8	4	3	0	0	0	0.10244	1	19108	19108		57.722	9.9733	1	12908000			3375	5520	1672	1693	3330	3330					0.03406383225569698
ALLEMDARL	9	Unmodified	_ALLEMDARL_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MATCH	HCT116MG_D190212_S2	2		2	516.281334	1030.54812	0.12217	6.3076E-05	0.83509	0.00043114	0.95726	0.00049422	516.2818162052175	50.182	0.15365	50.01	49.934	50.087	-0.1719	-0.02385	-4.2107E-05	NaN	57.722	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17388000			3376	5520	1672	1693							0.03406383225569698
ALLENPKMEL	10	Unmodified	_ALLENPKMEL_					0	0	0		ENSG00000175087|ENST00000374269|PDIK1L;ENSG00000125834|ENST00000381482|STK35	ENSG00000175087|ENST00000374269|PDIK1L	ENSG00000175087|ENST00000374269|PDIK1L	MULTI-MSMS	HCT116MG_D190212_S2	2	579.3153076171875	2	579.315374	1156.6162	0.59371	0.00034394	-0.1275	-7.3864E-05	0.4662	0.00027008	579.3152148045702	47.402	0.36184	47.28	47.026	47.388	-0.12175					9	6	2	0	0	0	0.029154	1	18105	18105		103.82	46.102	1	12860000			3377	2908	1673	1694	3331	3331					0.04415208085606537
ALLGAGKA	8	Unmodified	_ALLGAGKA_					0	0	0		ENSG00000212123|ENST00000419421|PRR22	ENSG00000212123|ENST00000419421|PRR22	ENSG00000212123|ENST00000419421|PRR22	MULTI-MSMS	HCT116MG_D190212_S2	2	350.72119140625	2	350.721239	699.427924	0.059107	2.073E-05	-0.03901	-1.3682E-05	0.020098	7.0487E-06	350.7210598055079	31.836	0.41384	31.587	31.354	31.768	-0.24883					14	7	3	0	0	0	0.50777	1	11760	11760		40.449	0	1	189010000			3378	6401	1674	1695	3332	3332					0.06618763014125761
ALLGAGKA	8	Unmodified	_ALLGAGKA_					0	0	0		ENSG00000212123|ENST00000419421|PRR22	ENSG00000212123|ENST00000419421|PRR22	ENSG00000212123|ENST00000419421|PRR22	MULTI-MSMS	HCT116MG_D190212_S2	2	700.4357299804688	1	700.435201	699.427924	0.9723	0.00068103	-0.18253	-0.00012785	0.78976	0.00055318	700.4347775224076	31.836	0.20644	31.587	31.458	31.665	-0.24883					8	3	3	0	0	0	0.47906	1	11762	11762		42.968	0	1	103950000			3379	6401	1674	1695	3333	3333					0.06618763014125761
ALLGDLTKA	9	Unmodified	_ALLGDLTKA_					0	0	0		TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000423641.1_1_10:86150999-86151317:+|nuORF	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	451.2709045410156	2	451.271293	900.528032	-0.034452	-1.5547E-05	-0.80523	-0.00036338	-0.83968	-0.00037892	451.27091327307505	44.399	0.58424	44.399	44.088	44.673	0					13	10	2	0	0	0	0.1935	1	16852	16852		41.956	1.9982	1	7286500			3380	1430	1675	1696	3334	3334					0.07378955557271638
ALLGDLTKA	9	Unmodified	_ALLGDLTKA_					0	0	0		TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000423641.1_1_10:86150999-86151317:+|nuORF	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	451.2714538574219	2	451.271293	900.528032	0.24821	0.00011201	0.27064	0.00012213	0.51885	0.00023414	451.27127364928145	44.515	0.4194	44.43	44.22	44.639	-0.084797					11	7	2	0	0	0	0.066823	1	16903	16903		66.457	2.2204	1	22131000			3381	1430	1675	1696	3335	3335					0.07378955557271638
ALLGGLVNV	9	Unmodified	_ALLGGLVNV_					0	0	0		PAQR4|p.L212P|1|0.37|ENSG00000162073|chr16:2971761-2971761|T/C|missense_variant;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4;ENSG00000162073|ENST00000318782|PAQR4	PAQR4|p.L212P|1|0.37|ENSG00000162073|chr16:2971761-2971761|T/C|missense_variant	PAQR4|p.L212P|1|0.37|ENSG00000162073|chr16:2971761-2971761|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	855.5308227539062	1	855.52983	854.522553	0.82194	0.00070319	-0.059903	-5.1249E-05	0.76204	0.00065195	855.5296343802485	56.997	0.25976	56.818	56.687	56.947	-0.17904					9	4	3	0	0	0	0.02256	1	22003	22003		93.883	4.9798	1	111820000			3382	4508	1676	1697	3336	3336					0.0894727676546836
ALLGGLVNV	9	Unmodified	_ALLGGLVNV_					0	0	0		PAQR4|p.L212P|1|0.37|ENSG00000162073|chr16:2971761-2971761|T/C|missense_variant;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4;ENSG00000162073|ENST00000318782|PAQR4	PAQR4|p.L212P|1|0.37|ENSG00000162073|chr16:2971761-2971761|T/C|missense_variant	PAQR4|p.L212P|1|0.37|ENSG00000162073|chr16:2971761-2971761|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	855.52983	854.522553	0.72323	0.00061874	0.819	0.00070068	1.5422	0.0013194	855.5307185111701	56.815	0.15602	56.815	56.737	56.893	0	-0.0012473	0.00070131	NaN	93.883	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34146000			3383	4508	1676	1697							0.0894727676546836
ALLGKIEKV	9	Unmodified	_ALLGKIEKV_					0	0	0		nc|ENSG00000143641|Q10471-2|GALNT2;GALNT2|p.N516Mfs*16|1|0.24|ENSG00000143641|chr1:230274548-230274548|A/-|frameshift_variant;ENSG00000143641|ENST00000366672|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	MULTI-SECPEP	HCT116MG_D190212_S2	2	485.769287109375	2	485.81841	969.622267	0.25167	0.00012227	0.36306	0.00017638	0.61473	0.00029865	485.8185003152626	36.691	0.20663	36.576	36.447	36.653	-0.11478					5	3	2	0	0	0	0.11815	1	13704	13704		63.227	17.528	1	15642000			3384	3825	1677	1698	3337	3337					0.13624094379417784
ALLGKLDAINV	11	Unmodified	_ALLGKLDAINV_					0	0	0		ENSG00000137955|ENST00000319942|RABGGTB	ENSG00000137955|ENST00000319942|RABGGTB	ENSG00000137955|ENST00000319942|RABGGTB	MSMS	HCT116MG_D190212_S2	2	563.84521484375	2	563.845156	1125.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.113	1	51.928	51.428	52.428	-0.18483								0	0	0	0.9469	1	20011	20011		7.9454	1.315	1				3385	3519	1678	1699	3338	3338					0.11794847091255178
ALLHADFRV	9	Unmodified	_ALLHADFRV_					0	0	0		ENST00000593157.5_1_19:13216299-13227549:-|nuORF;nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1;ENST00000585435.5_1_19:13218480-13220441:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	521.2317504882812	2	521.295633	1040.57671	0.71306	0.00037171	0.035058	1.8275E-05	0.74812	0.00038999	521.2954978395247	43.66	0.2055	43.582	43.453	43.659	-0.078373					5	3	2	0	0	0	0.21635	1	16541	16541		29.841	8.0939	1	13620000			3386	1968	1679	1700	3339	3339					0.0580486891703913
ALLHELQA	8	Unmodified	_ALLHELQA_					0	0	0		ENST00000447443.1_1_16:58549735-58552314:+|nuORF;ENST00000470003.5_1_16:58549441-58550248:+|nuORF;nc|ENSG00000103037|Q8TBK2-2|SETD6;SETD6|p.T433Lfs*31|1|0.3|ENSG00000103037|chr16:58518900-58518900|A/-|frameshift_variant;ENSG00000103037|ENST00000219315|SETD6	ENST00000447443.1_1_16:58549735-58552314:+|nuORF	ENST00000447443.1_1_16:58549735-58552314:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	447.2399597167969	2	447.75581	893.497067	0.12947	5.7971E-05	-0.084435	-3.7806E-05	0.045035	2.0165E-05	447.7556641630625	45.374	0.20609	45.281	45.205	45.411	-0.092472					5	3	2	0	0	0	0.20735	1	17256	17256		53.576	2.7205	1	10226000			3387	1871	1680	1701	3340	3340					0.046058022430429446
ALLKIEGVYA	10	Unmodified	_ALLKIEGVYA_					0	0	0		ENST00000329092.12_1_3:197677808-197679492:+|nuORF;ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF	ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENST00000329092.12_1_3:197677808-197679492:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	538.821044921875	2	538.82115	1075.62775	0.62788	0.00033831	-0.67895	-0.00036583	-0.051071	-2.7518E-05	538.8208539580592	48.604	0.25364	48.461	48.286	48.54	-0.1437					10	4	3	0	0	0	0.20072	1	18579	18579		59.368	13.669	1	87674000			3388	5690	1681	1702	3341	3341					0.09295773171243127
ALLNGEYLL	9	Unmodified	_ALLNGEYLL_					0	0	0		WDR18|p.E207Sfs*15|1|0.3|ENSG00000065268|chr19:990869-990869|G/-|frameshift_variant;ENSG00000065268|ENST00000585809|WDR18	WDR18|p.E207Sfs*15|1|0.3|ENSG00000065268|chr19:990869-990869|G/-|frameshift_variant	WDR18|p.E207Sfs*15|1|0.3|ENSG00000065268|chr19:990869-990869|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1005.5621948242188	1	1005.56152	1004.55425	0.65686	0.00066051	-0.15234	-0.00015318	0.50452	0.00050733	1005.561216292159	57.256	0.20802	57.077	56.947	57.155	-0.17904					8	3	3	0	0	0	0.031005	1	22110	22110		85.357	0.084716	1	104560000			3389	1153	1682	1703	3342	3342					0.0521522472874949
ALLPQNHKL	9	Unmodified	_ALLPQNHKL_					0	0	0		SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	517.311279296875	2	517.311284	1032.60801	0.51643	0.00026715	-0.29927	-0.00015482	0.21716	0.00011234	517.3109648056783	31.362	0.20807	31.362	31.232	31.44	0					5	3	2	0	0	0	0.1037	1	11560	11560		57.471	15.377	1	8904800			3390	2905	1683	1704	3343	3343					0.09301441951129163
ALLPQNHKL	9	Unmodified	_ALLPQNHKL_					0	0	0		SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	517.3111572265625	2	517.311284	1032.60801	0.48374	0.00025024	-0.15494	-8.0153E-05	0.32879	0.00017009	517.3110328138781	31.642	0.26	31.393	31.25	31.51	-0.24883					9	4	3	0	0	0	0.035914	1	11702	11702		81.613	26.84	1	24576000			3391	2905	1683	1704	3344	3344					0.09301441951129163
ALLPSSPTL	9	Unmodified	_ALLPSSPTL_					0	0	0		ENST00000547374.5_1_14:105676890-105677657:-|nuORF;ENST00000546997.1_1_14:105676890-105678659:-|nuORF;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1	ENST00000547374.5_1_14:105676890-105677657:-|nuORF	ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	898.5247802734375	1	898.52441	897.517133	1.0936	0.0009826	-0.12902	-0.00011593	0.96455	0.00086667	898.5242093844231	50.639	0.25982	50.467	50.351	50.611	-0.1719					7	4	2	0	0	0	0.0082751	1	19446	19446		117.6	39.614	1	17304000			3392	5799	1684	1705	3345	3345					0.06427553183004875
ALLRMWGRRLY	11	Unmodified	_ALLRMWGRRLY_					0	0	0			REV__nc|ENSG00000107821|Q96I82-2|KAZALD1	REV__nc|ENSG00000107821|Q96I82-2|KAZALD1	MULTI-MSMS	HCT116MG_D190212_S3	3	478.943359375	3	478.943208	1433.80779	0.32649	0.00015637	0.073302	3.5108E-05	0.39979	0.00019148	478.9433904209866	44.017	0.83263	43.711	43.24	44.072	-0.30616					18	15	2	0	0	0	0.74191	1	16450	16450		0.50596	0.051438	1	3015000	+		3393	11327	1685	1706	3346	3346					0.10824173627247546
ALLRRLLQRE	10	Unmodified	_ALLRRLLQRE_					0	0	0		nc|ENSG00000103356|Q5JPH6-2|EARS2;ENST00000561859.5_1_16:23555925-23568664:-|nuORF;ENSG00000103356|ENST00000449606|EARS2	nc|ENSG00000103356|Q5JPH6-2|EARS2	nc|ENSG00000103356|Q5JPH6-2|EARS2	MSMS	HCT116MG_D190212_S1	1	634.4011840820312	2	634.401496	1266.78844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.392	1	46.392	45.892	46.892	0								0	0	0	0.96337	1	17600	17600		0.35063	0	1				3394	9410	1686	1707	3347	3347					0.165715406079471
ALLSGIVSI	9	Unmodified	_ALLSGIVSI_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	872.5457763671875	1	872.545145	871.537869	0.66315	0.00057863	0.12917	0.0001127	0.79232	0.00069133	872.5450949884959	57.386	0.20784	57.386	57.256	57.464	0					7	3	3	0	0	0	0.0082751	1	22085	22085		117.6	7.9694	1	39902000			3395	5276	1687	1708	3348	3348					0.09696143562666748
ALLSGIVSI	9	Unmodified	_ALLSGIVSI_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	872.5457763671875	1	872.545145	871.537869	0.93145	0.00081273	-0.038011	-3.3167E-05	0.89344	0.00077957	872.5449311621135	57.604	0.25834	57.429	57.315	57.574	-0.17493					12	4	4	0	0	0	0.0082751	1	22253	22253		117.6	15.877	1	91523000			3396	5276	1687	1708	3349	3349					0.09696143562666748
ALLSLDPAAV	10	Unmodified	_ALLSLDPAAV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S2	2	969.5618896484375	1	969.561524	968.554247	0.7042	0.00068277	-0.17861	-0.00017318	0.52559	0.00050959	969.5610853192549	55.851	0.25807	55.665	55.535	55.793	-0.18565					8	4	2	0	0	0	0.011828	1	21564	21564		139.54	54.272	1	51472000			3397	6591	1688	1709	3350	3350					0.06871224728740799
ALLSLDPAAV	10	Unmodified	_ALLSLDPAAV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	HCT116MG_D190212_S1	1		1	969.561524	968.554247	0.72466	0.0007026	0.11488	0.00011139	0.83954	0.00081399	969.5614424545632	55.684	0.25724	55.684	55.554	55.811	0	0.0091998	0.00020304	NaN	139.54	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8716600			3398	6591	1688	1709							0.06871224728740799
ALLSWYSAA	9	Unmodified	_ALLSWYSAA_					0	0	0			REV__ENST00000582179.5_1_17:70943804-71084903:-|nuORF	REV__ENST00000582179.5_1_17:70943804-71084903:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	491.255615234375	2	491.255643	980.496732	0.2086	0.00010248	0.070351	3.456E-05	0.27895	0.00013704	491.2556183067643	42.615	0.26048	42.311	42.196	42.457	-0.30352					6	4	2	0	0	0	0.22969	1	15905	15905		38.151	7.9264	1	4173000	+		3399	12022	1689	1710	3351	3351					0.005703825231762494
ALLVIKKVTP	10	Unmodified	_ALLVIKKVTP_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MSMS	HCT116MG_D190212_S1	1	361.34210205078125	3	361.249632	1080.72707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.137	1	58.137	57.637	58.637	0								0	0	0	0.96804	1	22387	22387		0.69767	0.46182	1		+		3400	10562	1690	1711	3352	3352					0.18993215855994094
ALLWRIPEM	9	Unmodified	_ALLWRIPEM_					0	0	0			REV__ENSG00000174156|ENST00000211122|GSTA3	REV__ENSG00000174156|ENST00000211122|GSTA3	MSMS	HCT116MG_D190212_S4	4	376.8804016113281	3	376.879322	1127.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.475	1	37.092	36.592	37.592	-0.3839								0	0	0	0.76954	1	13754	13754		2.4985	0.41248	1		+		3401	13470	1691	1712	3353	3353					0.05743252876254701
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	HCT116MG_D190212_S2	2	492.78106689453125	2	492.78097	983.547388	0.28955	0.00014268	0.40932	0.00020171	0.69887	0.00034439	492.7811169384381	54.927	0.30697	54.739	54.56	54.867	-0.18797					14	5	4	0	0	0	0.0035314	2	21164	21156;21164		170.4	106.83	1	89812000			3402	6477	1692	1713	3354;3355	3355					0.05495588576548016
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	HCT116MG_D190212_S2	2	984.5552368164062	1	984.554664	983.547388	0.76569	0.00075386	0.014192	1.3973E-05	0.77988	0.00076783	984.5542180061326	54.927	0.20512	54.739	54.611	54.816	-0.18797					6	3	2	0	0	0	0.0038257	1	21179	21179		153.26	89.699	1	28234000			3403	6477	1692	1713	3356	3356					0.05495588576548016
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	HCT116MG_D190212_S3	3	492.781005859375	2	492.78097	983.547388	0.19705	9.7103E-05	0.31287	0.00015418	0.50992	0.00025128	492.78107937407555	55.087	0.26163	54.796	54.613	54.874	-0.2918					7	4	2	0	0	0	0.030247	1	20893	20893		86.121	47.97	1	7344400			3404	6477	1692	1713	3357	3357					0.05495588576548016
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MATCH	HCT116MG_D190212_S1	1		2	492.78097	983.547388	0.44736	0.00022045	-1.4143	-0.00069692	-0.96689	-0.00047647	492.78061945767166	54.714	0.15235	54.714	54.637	54.79	0	-0.035817	-0.0016737	NaN	170.4	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7546600			3405	6477	1692	1713							0.05495588576548016
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_	ALMVC(1)ESTIAY	ALM(1)VCESTIAY	ALMVC(61)ESTIAY	ALM(61)VCESTIAY	0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	637.2946166992188	2	637.293782	1272.57301	0.70451	0.00044898	-0.24427	-0.00015567	0.46024	0.00029331	637.2937225306489	52.254	0.25792	52.254	52.125	52.383	0					12	4	4	0	0	0	0.32879	1	19991	19991		61.357	13.609	1	45119000	+		3406	17361	1693	1714	3358	3358	66	166			-0.052373497539747405
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_	ALMVC(1)ESTIAY	ALM(1)VCESTIAY	ALMVC(44)ESTIAY	ALM(44)VCESTIAY	0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	637.2943725585938	2	637.293782	1272.57301	0.80708	0.00051435	-0.58619	-0.00037357	0.22089	0.00014077	637.2936088454909	53.143	0.30747	53.143	52.948	53.255	0					11	5	3	0	0	0	0.52409	1	20349	20349		43.858	9.4566	1	50521000	+		3407	17361	1693	1714	3359	3359	66	166			-0.052373497539747405
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_	ALMVC(1)ESTIAY	ALM(1)VCESTIAY	ALMVC(61)ESTIAY	ALM(61)VCESTIAY	0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	637.2947387695312	2	637.293782	1272.57301	0.59122	0.00037678	-0.3127	-0.00019928	0.27852	0.0001775	637.2935914344246	52.511	0.36174	52.324	52.193	52.555	-0.18726					17	6	4	0	0	0	0.32879	1	20175	20175		61.357	21.408	1	77347000	+		3408	17361	1693	1714	3360	3360	66	166			-0.052373497539747405
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_	ALMVC(1)ESTIAY	ALM(1)VCESTIAY	ALMVC(61)ESTIAY	ALM(61)VCESTIAY	0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	637.2938842773438	2	637.293782	1272.57301	0.33418	0.00021297	-0.33965	-0.00021646	-0.005476	-3.4898E-06	637.2938609971104	53.438	0.35939	53.249	53.069	53.429	-0.1894					18	6	4	0	0	0	0.32879	1	20538	20538		61.357	21.408	1	90803000	+		3409	17361	1693	1714	3361	3361	66	166			-0.052373497539747405
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_					0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	637.293782	1272.57301	0.80708	0.00051435	-0.58619	-0.00037357	0.22089	0.00014077	637.2936088454909	53.143	0.30747	53.143	52.948	53.255	0	-0.096468	-0.00024729	NaN	61.357	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50521000	+		3410	17361	1693	1714			66	166			-0.052373497539747405
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_					0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	637.293782	1272.57301	0.70451	0.00044898	-0.24427	-0.00015567	0.46024	0.00029331	637.2937225306489	52.254	0.25792	52.254	52.125	52.383	0	-0.082073	-8.7588E-05	NaN	61.357	12	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45119000	+		3411	17361	1693	1714			66	166			-0.052373497539747405
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_					0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	637.293782	1272.57301	0.33418	0.00021297	-0.33965	-0.00021646	-0.005476	-3.4898E-06	637.2938609971104	53.438	0.35939	53.249	53.069	53.429	-0.1894	0.0096349	6.6947E-05	NaN	61.357	18	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90803000	+		3412	17361	1693	1714			66	166			-0.052373497539747405
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_					0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	637.293782	1272.57301	0.59122	0.00037678	-0.3127	-0.00019928	0.27852	0.0001775	637.2935914344246	52.511	0.36174	52.324	52.193	52.555	-0.18726	-0.012439	-0.00017481	NaN	61.357	17	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77347000	+		3413	17361	1693	1714			66	166			-0.052373497539747405
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_					0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	637.293782	1272.57301	0.60341	0.00038455	0.014705	9.3712E-06	0.61812	0.00039392	637.2939942107457	53.625	0.20893	53.326	53.195	53.404	-0.29946	0.086833	0.00051861	NaN	61.357	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4045100	+		3414	17361	1693	1714			66	166			-0.052373497539747405
ALMVCESTIAY	11	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))VC(Carbamidomethyl (C))ESTIAY_					0	1	1			REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	REV__OBSL1|p.H818Y|1|0.38|ENSG00000124006|chr2:219563583-219563583|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	637.293782	1272.57301	0.62196	0.00039637	1.1564	0.00073699	1.7784	0.0011334	637.2943606155524	52.737	0.26135	52.431	52.3	52.561	-0.30639	0.094511	0.0016977	NaN	61.357	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2122400	+		3415	17361	1693	1714			66	166			-0.052373497539747405
ALNDHFVKL	9	Unmodified	_ALNDHFVKL_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	MULTI-MSMS	HCT116MG_D190212_S1	1	528.7958374023438	2	528.795466	1055.57638	0.048233	2.5505E-05	0.21208	0.00011215	0.26031	0.00013765	528.795643916399	40.58	0.20238	40.58	40.487	40.69	0					5	3	2	0	0	0	0.011034	1	15274	15274		110.79	56.96	1	17271000			3416	2300	1694	1715	3362	3362					0.0508144919717779
ALNDHFVKL	9	Unmodified	_ALNDHFVKL_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	MULTI-MSMS	HCT116MG_D190212_S1	1	352.8658142089844	3	352.86607	1055.57638	-0.36117	-0.00012745	-0.27521	-9.7112E-05	-0.63638	-0.00022456	352.8659107147318	40.583	0.20238	40.583	40.487	40.69	0					6	3	2	0	0	0	0.19461	1	15276	15276		32.037	11.457	1	11938000			3417	2300	1694	1715	3363	3363					0.0508144919717779
ALNDHFVKL	9	Unmodified	_ALNDHFVKL_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	MULTI-MSMS	HCT116MG_D190212_S2	2	528.7957763671875	2	528.795466	1055.57638	0.60922	0.00032215	-1.347	-0.00071228	-0.73776	-0.00039012	528.7952883759247	40.631	0.36029	40.561	40.365	40.725	-0.069626					16	6	4	0	0	0	0.0068642	1	15324	15324		121.35	67.513	1	72429000			3418	2300	1694	1715	3364	3364					0.0508144919717779
ALNDHFVKL	9	Unmodified	_ALNDHFVKL_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	352.86607	1055.57638	0.045352	1.6003E-05	-0.508	-0.00017926	-0.46265	-0.00016325	352.8658717681746	40.615	0.25732	40.545	40.365	40.622	-0.069626	-0.01879	-7.9998E-05	NaN	32.037	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39420000			3419	2300	1694	1715							0.0508144919717779
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	HCT116MG_D190212_S1	1	507.3028259277344	2	507.303124	1012.5917	0.23563	0.00011954	-0.11348	-5.7569E-05	0.12215	6.1967E-05	507.3030667095797	44.168	0.31751	44.168	43.986	44.304	0					14	5	4	0	0	0	0.0019609	1	16710	16710		187.3	76.009	1	88203000			3420	5377	1695	1716	3365	3365					0.08590315994376851
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	HCT116MG_D190212_S2	2	1013.599365234375	1	1013.59897	1012.5917	0.42777	0.00043358	0.00084465	8.5614E-07	0.42861	0.00043444	1013.5991785545388	44.173	0.20527	44.095	43.967	44.173	-0.078373					6	3	2	0	0	0	0.0034607	1	16785	16785		163.04	41.502	1	23357000			3421	5377	1695	1716	3366	3366					0.08590315994376851
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	HCT116MG_D190212_S1	1	518.7920532226562	2	518.792924	1035.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.844	1	49.844	49.344	50.344	0								0	0	0	0.023131	1	19003	19003		88.954	41.205	1				3422	3460	1696	1717	3367	3367					0.05493145334571636
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	518.7926635742188	2	518.792924	1035.57129	-0.042881	-2.2246E-05	0.23616	0.00012252	0.19328	0.00010027	518.7929937822558	49.958	0.25554	49.794	49.636	49.891	-0.16369					10	4	3	0	0	0	0.023778	1	19144	19144		92.653	44.905	1	84504000			3423	3460	1696	1717	3368	3368					0.05493145334571636
ALNENINQV	9	Unmodified	_ALNENINQV_					0	0	0		nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2	nc|ENSG00000125779|Q9BZ23-2|PANK2	nc|ENSG00000125779|Q9BZ23-2|PANK2	MSMS	HCT116MG_D190212_S1	1	507.76519775390625	2	507.764363	1013.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.539	1	34.539	34.039	35.039	0								0	0	0	0.037224	1	12818	12818		75.761	6.6559	1				3424	2906	1697	1718	3369	3369					0.007956780581821477
ALNENINQV	9	Unmodified	_ALNENINQV_					0	0	0		nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2	nc|ENSG00000125779|Q9BZ23-2|PANK2	nc|ENSG00000125779|Q9BZ23-2|PANK2	MSMS	HCT116MG_D190212_S2	2	507.76470947265625	2	507.764363	1013.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.642	1	34.484	33.984	34.984	-0.15834								0	0	0	0.026669	1	12895	12895		85.642	13.719	1				3425	2906	1697	1718	3370	3370					0.007956780581821477
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	HCT116MG_D190212_S1	1	514.298583984375	2	514.298373	1026.58219	0.38684	0.00019895	0.16255	8.3599E-05	0.54939	0.00028255	514.2984218618778	41.145	0.20846	41.145	41.029	41.237	0					5	3	2	0	0	0	0.0034865	1	15492	15492		165.72	58.621	1	17537000			3426	1405	1698	1719	3371	3371					0.0699654770885445
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	514.298373	1026.58219	0.078907	4.0582E-05	0.85673	0.00044061	0.93563	0.00048119	514.298608804637	41.125	0.20564	41.057	40.934	41.14	-0.068199	-0.044003	0.00061451	NaN	165.72	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47462000			3427	1405	1698	1719							0.0699654770885445
ALNNLLHSL	9	Unmodified	_ALNNLLHSL_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	497.7872619628906	2	497.787641	993.56073	0.24312	0.00012102	0.24124	0.00012009	0.48436	0.00024111	497.7874223062908	53.627	0.20615	53.438	53.274	53.48	-0.1894					6	3	2	0	0	0	0.041798	1	20625	20625		78.728	38.778	1	13472000			3428	4314	1699	1720	3372	3372					0.0636916268015284
ALNSLGAQGAP	11	Unmodified	_ALNSLGAQGAP_					0	0	0			REV__ENSG00000135451|ENST00000257909|TROAP	REV__ENSG00000135451|ENST00000257909|TROAP	MSMS	HCT116MG_D190212_S3	3	499.7669982910156	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.271	1	20.319	19.819	20.819	0.048107								0	0	0	0.78817	1	7001	7001		34.402	5.3201	1		+		3429	12092	1700	1721	3373	3373					0.020399819208023473
ALNVSFCAAW	10	Unmodified	_ALNVSFCAAW_					0	0	0		ENST00000398527.6_1_X:11776774-11777916:+|nuORF	ENST00000398527.6_1_X:11776774-11777916:+|nuORF	ENST00000398527.6_1_X:11776774-11777916:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	361.1758728027344	3	361.176027	1080.50625	-0.23318	-8.4219E-05	-0.07086	-2.5593E-05	-0.30404	-0.00010981	361.1759784663945	38.441	0.26472	38.348	38.219	38.483	-0.09301					6	4	2	0	0	0	0.81435	1	14469	14469		6.1918	0	1	17361000			3430	7685	1701	1722	3374	3374					-0.030781724629378004
ALPDDLVEV	9	Unmodified	_ALPDDLVEV_					0	0	0		ENSG00000120756|ENST00000457734|PLS1;PLS1|p.Y599C|1|0.34|ENSG00000120756|chr3:142711913-142711913|A/G|missense_variant	ENSG00000120756|ENST00000457734|PLS1	ENSG00000120756|ENST00000457734|PLS1	MULTI-MSMS	HCT116MG_D190212_S2	2	970.509765625	1	970.509154	969.501877	0.76705	0.00074443	0.16693	0.00016201	0.93399	0.00090644	970.508984983891	52.404	0.67025	52.217	52.038	52.708	-0.18725					25	12	3	0	0	0	0.013464	1	20138	20138		104.8	11.977	1	17552000			3431	2713	1702	1723	3375	3375					0.015906415951462805
ALPDQGIAKA	10	Unmodified	_ALPDQGIAKA_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	492.27996826171875	2	492.279649	982.544745	0.19442	9.5708E-05	0.18969	9.3379E-05	0.3841	0.00018909	492.2796682821586	29.874	0.25828	29.573	29.444	29.702	-0.30095					7	4	2	0	0	0	0.24395	1	10998	10998		55.503	15.545	1	14753000			3432	1527	1703	1724	3376	3376					0.052774564432297666
ALPEVQKQV	9	Unmodified	_ALPEVQKQV_					0	0	0		ENST00000405489.7_2_2:27435269-27435350:+|nuORF	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	506.2955627441406	2	506.295299	1010.57605	0.54183	0.00027432	0.17456	8.8377E-05	0.71638	0.0003627	506.29550027950546	30.881	0.41647	30.881	30.763	31.18	0					10	7	2	0	0	0	0.1754	1	11361	11361		43.858	7.7313	1	2855800			3433	7710	1704	1725	3377	3377					0.0711802947733986
ALPEVQKQV	9	Unmodified	_ALPEVQKQV_					0	0	0		ENST00000405489.7_2_2:27435269-27435350:+|nuORF	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	506.2953186035156	2	506.295299	1010.57605	0.49507	0.00025065	-0.14186	-7.1821E-05	0.35321	0.00017883	506.29520981115	31.174	0.30893	30.907	30.768	31.077	-0.26704					7	5	2	0	0	0	0.12994	1	11509	11509		52.268	8.4101	1	8722300			3434	7710	1704	1725	3378	3378					0.0711802947733986
ALPGCHTGK	9	Unmodified	_ALPGCHTGK_					0	0	0		TRAPPC8|p.I1181Lfs*4|1|0.23|ENSG00000153339|chr18:31852462-31852466|ATGAT/-|frameshift_variant;nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8	TRAPPC8|p.I1181Lfs*4|1|0.23|ENSG00000153339|chr18:31852462-31852466|ATGAT/-|frameshift_variant	TRAPPC8|p.I1181Lfs*4|1|0.23|ENSG00000153339|chr18:31852462-31852466|ATGAT/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	442.22796630859375	2	442.226362	882.438172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.398	1	35.099	34.599	35.599	-0.29922								0	0	0	0.768	1	13064	13064		7.9102	2.1497	1				3435	4189	1705	1726	3379	3379					-0.007749973229351781
ALPKEDPTAV	10	Unmodified	_ALPKEDPTAV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MSMS	HCT116MG_D190212_S2	2	520.7855834960938	2	520.784764	1039.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.487	1	29.186	28.686	29.686	-0.30095								0	0	0	0.35951	1	10803	10803		55.235	7.486	1				3436	5641	1706	1727	3380	3380					0.036780193777985914
ALPLNIIAPK	10	Unmodified	_ALPLNIIAPK_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MSMS	HCT116MG_D190212_S2	2	525.3079223632812	2	525.33951	1048.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.732	1	15.398	14.898	15.898	-0.33451								0	0	0	0.92272	1	5248	5248		10.824	0.75	1				3437	6349	1707	1728	3381	3381					0.1420806978778728
ALPNGPPS	8	Unmodified	_ALPNGPPS_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-MSMS	HCT116MG_D190212_S2	2	376.70037841796875	2	376.700503	751.386454	-0.27585	-0.00010391	0.70474	0.00026548	0.4289	0.00016157	376.7004814520785	21.613	0.6762	21.228	20.959	21.635	-0.38503					16	12	2	0	0	0	0.73076	1	7585	7585		19.439	0	1	56572000			3438	2903	1708	1729	3382	3382					0.0008158225481338377
ALPNGPPS	8	Unmodified	_ALPNGPPS_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-MSMS	HCT116MG_D190212_S2	2	752.39404296875	1	752.39373	751.386454	0.89948	0.00067677	-0.31524	-0.00023719	0.58424	0.00043958	752.3933666234582	21.526	0.3119	21.141	21.011	21.323	-0.38503					9	5	2	0	0	0	0.78216	1	7589	7589		13.508	0	1	18376000			3439	2903	1708	1729	3383	3383					0.0008158225481338377
ALPPVLTTV	9	Unmodified	_ALPPVLTTV_					0	0	0		LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1	LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	910.5618286132812	1	910.560795	909.553519	0.70027	0.00063764	0.59721	0.00054379	1.2975	0.0011814	910.5612027252088	54.416	0.35705	54.227	54.048	54.405	-0.1894					11	6	3	0	0	0	0.0034497	1	20956	20956		161.89	52.265	1	47949000			3440	4252	1709	1730	3384	3384					0.09512430079689693
ALPRDARA	8	Unmodified	_ALPRDARA_					0	0	0		ENSG00000175315|ENST00000312134|CST6	ENSG00000175315|ENST00000312134|CST6	ENSG00000175315|ENST00000312134|CST6	MULTI-MSMS	HCT116MG_D190212_S2	2	435.25115966796875	2	435.251226	868.487899	0.0086968	3.7853E-06	0.034951	1.5213E-05	0.043648	1.8998E-05	435.25115739201703	19.208	0.83323	18.838	18.575	19.408	-0.3695					34	15	3	0	0	0	0.26254	1	6622	6622		62.573	8.9971	1	17197000			3441	5372	1710	1731	3385	3385					0.048394536773685104
ALPRTERLFPI	11	Unmodified	_ALPRTERLFPI_					0	0	0		ENST00000423313.5_1_1:175146771-175161810:-|nuORF	ENST00000423313.5_1_1:175146771-175161810:-|nuORF	ENST00000423313.5_1_1:175146771-175161810:-|nuORF	MSMS	HCT116MG_D190212_S4	4	438.2612609863281	3	438.262712	1311.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.895	1	42.52	42.02	43.02	-0.37493								0	0	0	0.95023	1	15783	15783		5.0475	2.9615	1				3442	7799	1711	1732	3386	3386					0.12289316139572293
ALPRTVKYVVN	11	Unmodified	_ALPRTVKYVVN_					0	0	0			REV__ENSG00000186912|ENST00000374519|P2RY4	REV__ENSG00000186912|ENST00000374519|P2RY4	MULTI-SECPEP	HCT116MG_D190212_S1	1	630.2860107421875	2	630.377155	1258.73976	0.68072	0.00042911	-0.045087	-2.8422E-05	0.63563	0.00040069	630.8784705798737	52.15	0.25905	52.15	52.021	52.28	0					7	4	2	0	0	0	0.35748	1	19945	19945		8.1555	2.4237	1	16398000	+		3443	13905	1712	1733	3387	3387					0.12073627248241792
ALPSDQIIAA	10	Unmodified	_ALPSDQIIAA_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	499.7795715332031	2	499.779482	997.544411	0.31935	0.0001596	-0.13522	-6.758E-05	0.18413	9.2024E-05	499.77945393049094	32.302	0.41632	32.072	31.942	32.359	-0.23009					11	7	2	0	0	0	0.37752	1	11978	11978		43.772	7.2662	1	15073000			3444	5996	1713	1734	3388	3388					0.04554036723379795
ALPSDQIIAA	10	Unmodified	_ALPSDQIIAA_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	499.7794189453125	2	499.779482	997.544411	0.41408	0.00020695	-0.18752	-9.3717E-05	0.22656	0.00011323	499.77919508197954	32.403	0.31275	32.124	31.994	32.306	-0.27841					9	5	2	0	0	0	0.28726	1	11897	11897		51.63	7.7715	1	7666100			3445	5996	1713	1734	3389	3389					0.04554036723379795
ALPTETLYPM	10	Unmodified	_ALPTETLYPM_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S2	2	568.2897338867188	2	568.288825	1134.5631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.133	1	30.866	30.366	31.366	-0.26704								0	0	0	0.92272	1	11473	11473		10.824	1.4408	1		+		3446	13681	1714	1735	3390	3390					0.0011983030292412877
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	HCT116MG_D190212_S2	2	550.8093872070312	2	550.808574	1099.60259	0.72693	0.0004004	0.23748	0.00013081	0.96441	0.00053121	550.8083735547247	47.778	0.3093	47.645	47.532	47.841	-0.13281					11	5	3	0	0	0	0.011132	1	18256	18256		110.55	50.479	1	21229000			3447	4050	1715	1736	3391	3391					0.05677718368656315
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	HCT116MG_D190212_S3	3	550.8085327148438	2	550.808574	1099.60259	0.32313	0.00017798	-1.4659	-0.00080741	-1.1427	-0.00062943	550.8075472614453	48.033	0.31295	47.717	47.566	47.879	-0.31596					9	5	2	0	0	0	0.14376	1	18076	18076		49.527	5.669	1	3669700			3448	4050	1715	1736	3392	3392					0.05677718368656315
ALQEQLSRL	9	Unmodified	_ALQEQLSRL_					0	0	0		nc|ENSG00000164488|Q5SW24-4|DACT2;DACT2|p.Q529Sfs*228|1|0.39|ENSG00000164488|chr6:168308172-168308172|G/-|frameshift_variant;ENSG00000164488|ENST00000366795|DACT2	nc|ENSG00000164488|Q5SW24-4|DACT2	nc|ENSG00000164488|Q5SW24-4|DACT2	MSMS	HCT116MG_D190212_S1	1	529.3038330078125	2	529.303655	1056.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.233	1	33.233	32.733	33.733	0								0	0	0	0.094105	1	12291	12291		57.722	2.2192	1				3449	637	1716	1737	3393	3393					0.0667253036326656
ALQEQLSRL	9	Unmodified	_ALQEQLSRL_					0	0	0		nc|ENSG00000164488|Q5SW24-4|DACT2;DACT2|p.Q529Sfs*228|1|0.39|ENSG00000164488|chr6:168308172-168308172|G/-|frameshift_variant;ENSG00000164488|ENST00000366795|DACT2	nc|ENSG00000164488|Q5SW24-4|DACT2	nc|ENSG00000164488|Q5SW24-4|DACT2	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.3223876953125	2	529.303655	1056.59276	0.75529	0.00039978	-4.3347	-0.0022944	-3.5794	-0.0018946	529.8017356066999	33.341	0.3097	33.148	32.966	33.276	-0.19297					9	5	2	0	0	0	0.089874	1	12370	12370		71.708	12.34	1	59464000			3450	637	1716	1737	3394	3394					0.0667253036326656
ALQEVLKTA	9	Unmodified	_ALQEVLKTA_					0	0	0		ENST00000484616.2_1_6:133135907-133136327:+|nuORF;ENSG00000112306|ENST00000230050|RPS12	ENST00000484616.2_1_6:133135907-133136327:+|nuORF	ENST00000484616.2_1_6:133135907-133136327:+|nuORF	MSMS	HCT116MG_D190212_S2	2	486.7904968261719	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.369	1	36.241	35.741	36.741	-0.12799								0	0	0	0.023761	1	13598	13598		88.364	30.642	1				3451	2341	1717	1738	3395	3395					0.07822627103053037
ALQEVLKTA	9	Unmodified	_ALQEVLKTA_					0	0	0		ENST00000484616.2_1_6:133135907-133136327:+|nuORF;ENSG00000112306|ENST00000230050|RPS12	ENST00000484616.2_1_6:133135907-133136327:+|nuORF	ENST00000484616.2_1_6:133135907-133136327:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	486.7899169921875	2	486.78985	971.565146	-0.067162	-3.2694E-05	0.31894	0.00015526	0.25178	0.00012256	486.7898855877309	36.472	0.26031	36.171	36.041	36.301	-0.30113					7	4	2	0	0	0	0.037825	1	13500	13500		80.676	36.818	1	5712500			3452	2341	1717	1738	3396	3396					0.07822627103053037
ALQKAKQDL	9	Unmodified	_ALQKAKQDL_					0	0	0		ENSG00000205420|ENST00000330722|KRT6A;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538	ENSG00000205420|ENST00000330722|KRT6A	ENSG00000205420|ENST00000330722|KRT6A	MSMS	HCT116MG_D190212_S3	3	507.80072021484375	2	507.800749	1013.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.018	1	39.717	39.217	40.217	-0.30137								0	0	0	0.1044	1	14843	14843		54.774	3.1437	1			+	3453	547	1718	1739	3397	3397					0.08069431851606623
ALQPLMTFL	9	Unmodified	_ALQPLMTFL_					0	0	0		ENST00000476917.5_1_10:126100559-126100658:-|nuORF;OAT|p.T33Qfs*28|1|0.19|ENSG00000065154|chr10:124412075-124412075|T/-|frameshift_variant	ENST00000476917.5_1_10:126100559-126100658:-|nuORF	ENST00000476917.5_1_10:126100559-126100658:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	516.7899780273438	2	517.291171	1032.56779	0.35595	0.00018413	0.13533	7.0007E-05	0.49128	0.00025414	517.2911933574982	30.164	0.5583	30.164	29.841	30.399	0					20	10	3	0	0	0	0.24195	1	11019	11019		7.9102	0	1	48187000			3454	8208	1719	1740	3398	3398					0.05280759236347876
ALRACWYWGWF	11	Unmodified	_ALRACWYWGWF_					0	0	0		ENST00000512411.5_1_4:8368690-8375449:-|nuORF	ENST00000512411.5_1_4:8368690-8375449:-|nuORF	ENST00000512411.5_1_4:8368690-8375449:-|nuORF	MSMS	HCT116MG_D190212_S3	3	486.8973693847656	3	486.897375	1457.6703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.581	1	11.634	11.134	12.134	0.053735								0	0	0	0.96208	1	3559	3559		0	0	1				3455	8507	1720	1741	3399	3399					-0.04023154972219345
ALRDVSEEL	9	Unmodified	_ALRDVSEEL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA;TXLNA|p.G94Afs*35|1|0.2|ENSG00000084652|chr1:32181348-32181348|G/-|frameshift_variant	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2720947265625	2	516.272021	1030.52949	0.078167	4.0356E-05	0.58113	0.00030002	0.6593	0.00034038	516.2721738002411	37.322	0.20639	37.219	37.078	37.284	-0.10318					5	3	2	0	0	0	0.053544	1	14002	14002		72.968	12.578	1	37752000			3456	1448	1721	1742	3400	3400					0.01544544855391905
ALRGNGGN	8	Unmodified	_ALRGNGGN_					0	0	0			REV__ENSG00000119638|ENST00000238616|NEK9	REV__ENSG00000119638|ENST00000238616|NEK9	MULTI-MSMS	HCT116MG_D190212_S2	2	758.3921508789062	1	758.390376	757.3831	1.0446	0.00079219	2.4938	0.0018913	3.5384	0.0026835	758.3916412293453	34.221	0.25949	34.046	33.916	34.175	-0.17512					7	4	2	0	0	0	0.86388	1	12752	12752		2.8892	0	1	24320000	+		3457	11661	1722	1743	3401	3401					-0.005296677991850629
ALRLLYLLM	9	Unmodified	_ALRLLYLLM_					0	0	0		ENST00000515773.5_1_6:43152048-43164205:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	ENST00000515773.5_1_6:43152048-43164205:+|nuORF	MSMS	HCT116MG_D190212_S1	1	369.2309875488281	3	369.231584	1104.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.558	1	10.558	10.058	11.058	0								0	0	0	0.7701	1	3249	3249		0.23584	0	1				3458	2354	1723	1744	3402	3402					0.12477300432760785
ALRRLRPRTR	10	Unmodified	_ALRRLRPRTR_					0	0	0		NCF4|p.D293Ifs*11|1|0.31|ENSG00000100365|chr22:36877676-36877676|G/-|frameshift_variant;ENSG00000100365|ENST00000248899|NCF4;nc|ENSG00000100365|Q15080-3|NCF4	NCF4|p.D293Ifs*11|1|0.31|ENSG00000100365|chr22:36877676-36877676|G/-|frameshift_variant	NCF4|p.D293Ifs*11|1|0.31|ENSG00000100365|chr22:36877676-36877676|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	432.2799987792969	3	432.281211	1293.8218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.86	1	39.48	38.98	39.98	-0.37936								0	0	0	0.9689	1	14614	14614		0.50596	0.17668	1				3459	1700	1724	1745	3403	3403					0.1866458717054229
ALRRLRPRTR	10	Unmodified	_ALRRLRPRTR_					0	0	0		NCF4|p.D293Ifs*11|1|0.31|ENSG00000100365|chr22:36877676-36877676|G/-|frameshift_variant;ENSG00000100365|ENST00000248899|NCF4;nc|ENSG00000100365|Q15080-3|NCF4	NCF4|p.D293Ifs*11|1|0.31|ENSG00000100365|chr22:36877676-36877676|G/-|frameshift_variant	NCF4|p.D293Ifs*11|1|0.31|ENSG00000100365|chr22:36877676-36877676|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	432.2801513671875	3	432.281211	1293.8218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.568	1	56.262	55.762	56.762	-0.30626								0	0	0	0.96836	1	21209	21209		0.62683	0.39098	1				3460	1700	1724	1745	3404	3404					0.1866458717054229
ALRRRELTRYL	11	Unmodified	_ALRRRELTRYL_					0	0	0			REV__MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	REV__MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	363.20001220703125	4	362.471755	1445.85791	-0.075999	-2.7547E-05	0.26597	9.6407E-05	0.18997	6.886E-05	362.7226498385324	15.591	0.1562	15.591	15.484	15.64	0					4	2	2	0	0	0	0.74191	1	5154	5154		0.50596	0	1	951130	+		3461	11897	1725	1746	3405	3405					0.15281999556736992
ALRRRELTRYL	11	Unmodified	_ALRRRELTRYL_					0	0	0			REV__MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	REV__MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		4	362.471755	1445.85791	-0.075999	-2.7547E-05	0.26597	9.6407E-05	0.18997	6.886E-05	362.7226498385324	15.591	0.1562	15.591	15.484	15.64	0	-0.062259	0.00017915	NaN	0.50596	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951130	+		3462	11897	1725	1746							0.15281999556736992
ALRRRELTRYL	11	Unmodified	_ALRRRELTRYL_					0	0	0			REV__MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	REV__MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		4	362.471755	1445.85791	-0.27503	-9.9692E-05	-0.46362	-0.00016805	-0.73865	-0.00026774	362.72249896319556	16.05	0.15668	15.715	15.585	15.741	-0.33451	0.062259	-0.00087867	NaN	0.50596	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1267000	+		3463	11897	1725	1746							0.15281999556736992
ALRYPMAVGLN	11	Unmodified	_ALRYPMAVGLN_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	HCT116MG_D190212_S1	1	602.8295288085938	2	602.828983	1203.64341	0.54045	0.0003258	0.38662	0.00023307	0.92708	0.00055887	602.8292698665173	45.599	0.26169	45.599	45.451	45.713	0					7	4	2	0	0	0	0.18818	1	17302	17302		76.825	36.875	1	11484000			3464	3067	1726	1747	3406	3406					0.04973736416650354
ALSAILYNAP	10	Unmodified	_ALSAILYNAP_					0	0	0			REV__ENSG00000135312|ENST00000369947|HTR1B	REV__ENSG00000135312|ENST00000369947|HTR1B	MULTI-MSMS	HCT116MG_D190212_S3	3	517.2933349609375	2	516.78985	1031.56515	0.1755	9.0697E-05	0.13428	6.9395E-05	0.30978	0.00016009	516.789847940405	30.683	0.65471	30.422	30.263	30.917	-0.26071					40	14	4	0	0	0	0.51145	1	11372	11372		34.402	0.29928	1	620980000	+		3465	12084	1727	1748	3407	3407					0.050626271030296266
ALSDGVHKI	9	Unmodified	_ALSDGVHKI_					0	0	0		nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM;ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF	nc|ENSG00000158234|Q9NVQ4|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	MULTI-MSMS	HCT116MG_D190212_S1	1	470.26641845703125	2	470.266542	938.51853	0.22836	0.00010739	-0.099479	-4.6782E-05	0.12888	6.0608E-05	470.2664189241581	27.047	0.31217	27.047	26.865	27.178	0					12	5	3	0	0	0	0.0045841	1	9801	9801		142.08	56.808	1	49970000			3466	4361	1728	1749	3408	3408					0.0468118727176261
ALSDGVHKI	9	Unmodified	_ALSDGVHKI_					0	0	0		nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM;ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF	nc|ENSG00000158234|Q9NVQ4|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	MULTI-MSMS	HCT116MG_D190212_S2	2	470.26666259765625	2	470.266542	938.51853	0.45747	0.00021513	0.09049	4.2554E-05	0.54796	0.00025769	470.26649675527926	27.506	0.36171	27.164	26.985	27.347	-0.34201					15	6	4	0	0	0	0.0067688	1	9985	9985		122.18	50.257	1	117390000			3467	4361	1728	1749	3409	3409					0.0468118727176261
ALSDGVHKI	9	Unmodified	_ALSDGVHKI_					0	0	0		nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM;ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF	nc|ENSG00000158234|Q9NVQ4|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	MULTI-MATCH	HCT116MG_D190212_S3	3		2	470.266542	938.51853	0.26617	0.00012517	-0.48146	-0.00022641	-0.21529	-0.00010125	470.26634403240143	27.273	0.15608	27.104	27.016	27.172	-0.16933	-0.0011114	-0.00035876	NaN	142.08	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3317300			3468	4361	1728	1749							0.0468118727176261
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	HCT116MG_D190212_S1	1	534.776611328125	2	534.777274	1067.53999	-0.085871	-4.5922E-05	-0.20232	-0.0001082	-0.28819	-0.00015412	534.777079878565	38.722	0.25907	38.722	38.592	38.851	0					10	4	3	0	0	0	0.10244	1	14507	14507		74.423	57.48	1	44689000			3469	4075	1729	1750	3410	3410					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	HCT116MG_D190212_S2	2	534.77734375	2	534.777274	1067.53999	0.38196	0.00020427	0.08978	4.8012E-05	0.47174	0.00025228	534.7772550049584	38.796	0.52045	38.712	38.492	39.012	-0.084621					17	9	3	0	0	0	0.030723	1	14550	14550		109.63	109.63	1	141080000			3470	4075	1729	1750	3411	3411					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	HCT116MG_D190212_S2	2	356.8539123535156	3	356.853941	1067.53999	-0.2504	-8.9356E-05	0.02861	1.021E-05	-0.22179	-7.9147E-05	356.85399332683585	38.761	0.26208	38.677	38.492	38.754	-0.084618					7	4	2	0	0	0	0.077982	1	14574	14574		62.573	34.944	1	27195000			3471	4075	1729	1750	3412	3412					0.008925723004722386
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant;ENSG00000110851|ENST00000228437|PRDM4	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	471.748291015625	2	471.748182	941.481811	0.23657	0.0001116	0.28718	0.00013548	0.52376	0.00024708	471.74819247095763	33.841	0.26064	33.841	33.659	33.919	0					7	4	2	0	0	0	0.1037	1	12543	12543		57.471	27.247	1	8264800			3472	2267	1730	1751	3413	3413					0.008728906551937143
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant;ENSG00000110851|ENST00000228437|PRDM4	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	471.7481994628906	2	471.748182	941.481811	0.18255	8.6119E-05	-0.16886	-7.9659E-05	0.013692	6.4593E-06	471.74803641424086	33.982	0.31089	33.807	33.657	33.967	-0.17512					11	5	3	0	0	0	0.0063744	1	12645	12645		125.62	68.153	1	35846000			3473	2267	1730	1751	3414	3414					0.008728906551937143
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant;ENSG00000110851|ENST00000228437|PRDM4	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	471.74835205078125	2	471.748182	941.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.206	1	33.912	33.412	34.412	-0.29419								0	0	0	0.01641	1	12582	12582		97.075	62.887	1				3474	2267	1730	1751	3415	3415					0.008728906551937143
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant;ENSG00000110851|ENST00000228437|PRDM4	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	471.7481994628906	2	471.748182	941.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.32	1	33.934	33.434	34.434	-0.38558								0	0	0	0.27276	1	12527	12527		42.095	18.946	1				3475	2267	1730	1751	3416	3416					0.008728906551937143
ALSDYDLVL	9	Unmodified	_ALSDYDLVL_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MSMS	HCT116MG_D190212_S2	2	1008.5255126953125	1	1008.5248	1007.51753	0.70925	0.0007153	0.16809	0.00016952	0.87734	0.00088482	1008.5247485215176	56.52	0.26374	56.338	56.207	56.471	-0.18261					10	4	4	0	0	0	0.065014	1	21835	21835		67.344	9.8725	1	122600000			3476	2983	1731	1752	3417	3417					0.014069281121805943
ALSDYDLVL	9	Unmodified	_ALSDYDLVL_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1008.5248	1007.51753	0.83352	0.00084062	-0.073221	-7.3845E-05	0.7603	0.00076678	1008.5245724771352	56.403	0.15498	56.403	56.273	56.428	0	0.027358	-0.00014934	NaN	67.344	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32509000			3477	2983	1731	1752							0.014069281121805943
ALSDYDLVL	9	Unmodified	_ALSDYDLVL_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1008.5248	1007.51753	0.74007	0.00074638	0.41695	0.0004205	1.157	0.0011669	1008.5252269080647	56.669	0.15678	56.385	56.255	56.412	-0.28367	0.010221	0.00034501	NaN	67.344	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1418300			3478	2983	1731	1752							0.014069281121805943
ALSEALTEL	9	Unmodified	_ALSEALTEL_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1;ENST00000582352.1_1_17:18236273-18236588:-|nuORF	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	946.509033203125	1	946.509154	945.501877	0.87874	0.00083173	-0.66536	-0.00062977	0.21338	0.00020196	946.5081223458899	52.386	0.30888	52.386	52.176	52.485	0					7	5	2	0	0	0	0.004194	1	20037	20037		147.83	43.032	1	13496000			3479	5445	1732	1753	3418	3418					0.026946415951329072
ALSEALTEL	9	Unmodified	_ALSEALTEL_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1;ENST00000582352.1_1_17:18236273-18236588:-|nuORF	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	946.5064086914062	1	946.509154	945.501877	0.76744	0.00072639	-1.182	-0.0011188	-0.41455	-0.00039238	946.5075802524358	52.595	0.51529	52.408	52.193	52.708	-0.18726					15	9	2	0	0	0	0.043314	1	20201	20201		77.984	10.64	1	52092000			3480	5445	1732	1753	3419	3419					0.026946415951329072
ALSEELVQL	9	Unmodified	_ALSEELVQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2791748046875	2	501.279315	1000.54408	0.48764	0.00024445	-0.24136	-0.00012099	0.24629	0.00012346	501.27916242104266	53.95	0.20383	53.95	53.822	54.026	0					8	3	3	0	0	0	0.013464	1	20679	20679		104.8	23.186	1	90371000			3481	5152	1733	1754	3420	3420					0.04382617003534506
ALSEELVQL	9	Unmodified	_ALSEELVQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S1	1	1001.5526733398438	1	1001.55135	1000.54408	0.85151	0.00085284	0.55205	0.00055291	1.4036	0.0014057	1001.5518994665011	53.95	0.20383	53.95	53.822	54.026	0					6	3	2	0	0	0	0.023611	1	20694	20694		92.822	24.741	1	46834000			3482	5152	1733	1754	3421	3421					0.04382617003534506
ALSEELVQL	9	Unmodified	_ALSEELVQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2793884277344	2	501.279315	1000.54408	0.40805	0.00020455	0.36587	0.0001834	0.77392	0.00038795	501.2791699515583	54.241	0.41053	54.052	53.842	54.252	-0.1894					25	7	5	0	0	0	0.0063744	1	20866	20866		125.62	29.34	1	261020000			3483	5152	1733	1754	3422	3422					0.04382617003534506
ALSEELVQL	9	Unmodified	_ALSEELVQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S2	2	1001.5519409179688	1	1001.55135	1000.54408	0.50936	0.00051015	0.26821	0.00026863	0.77757	0.00077877	1001.5513184787704	54.216	0.41053	54.026	53.842	54.252	-0.1894					21	7	4	0	0	0	0.013464	1	20869	20869		104.8	26.65	1	121680000			3484	5152	1733	1754	3423	3423					0.04382617003534506
ALSEELVQL	9	Unmodified	_ALSEELVQL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S3	3	501.27923583984375	2	501.279315	1000.54408	0.39093	0.00019596	-0.17916	-8.981E-05	0.21177	0.00010615	501.27922501823315	54.355	0.26153	54.06	53.929	54.19	-0.29587					7	4	2	0	0	0	0.031005	1	20612	20612		85.357	27.885	1	4231400			3485	5152	1733	1754	3424	3424					0.04382617003534506
ALSEGDIHTL	10	Unmodified	_ALSEGDIHTL_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000496854.1_1_2:187533488-187534577:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	HCT116MG_D190212_S2	2	528.27294921875	2	528.272021	1054.52949	0.20413	0.00010784	0.059433	3.1397E-05	0.26357	0.00013923	528.2719846521677	38.078	0.25821	37.985	37.805	38.063	-0.09301					7	4	2	0	0	0	0.079351	1	14308	14308		78.149	32.128	1	13374000			3486	3562	1734	1755	3425	3425					0.0044054485538254085
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MSMS	HCT116MG_D190212_S1	1	473.2838439941406	2	473.2844	944.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.635	1	38.635	38.135	39.135	0								0	0	0	0.018972	1	14470	14470		93.166	15.016	1				3487	2895	1735	1756	3426	3426					0.079752247287729
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2846374511719	2	473.2844	944.554247	0.17347	8.21E-05	0.26126	0.00012365	0.43473	0.00020575	473.284426383478	38.602	0.2154	38.518	38.382	38.597	-0.084618					6	3	2	0	0	0	0.0041644	1	14511	14511		148.27	32.576	1	32693000			3488	2895	1735	1756	3427	3427					0.079752247287729
ALSELIILT	9	Unmodified	_ALSELIILT_					0	0	0		CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1	CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	972.5982666015625	1	972.597575	971.590298	0.72116	0.0007014	0.078354	7.6207E-05	0.79952	0.00077761	972.5974767460261	57.568	0.1543	57.393	57.315	57.469	-0.17494					6	2	3	0	0	0	0.013464	1	22256	22256		104.8	33.666	1	39547000			3489	633	1736	1757	3428	3428					0.10336681905619116
ALSELIILT	9	Unmodified	_ALSELIILT_					0	0	0		CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1	CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	972.597575	971.590298	0.58657	0.0005705	0.14928	0.00014519	0.73586	0.00071569	972.5974522764933	57.386	0.15582	57.386	57.256	57.412	0	-0.0034411	6.2193E-05	NaN	104.8	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15464000			3490	633	1736	1757							0.10336681905619116
ALSEQILMV	9	Unmodified	_ALSEQILMV_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1004.5306396484375	1	1003.54924	1002.54197	0.6205	0.0006227	-0.15994	-0.00016051	0.46056	0.00046219	1003.5493629079081	55.851	0.15509	55.665	55.587	55.742	-0.18565					4	2	2	0	0	0	0.45867	1	21509	21509		19.257	4.4187	1	29112000			3491	5602	1737	1758	3429	3429					0.040798649940711584
ALSERAVAV	9	Unmodified	_ALSERAVAV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	HCT116MG_D190212_S2	2	458.26678466796875	2	458.266542	914.51853	0.38106	0.00017462	-0.52845	-0.00024217	-0.14739	-6.7546E-05	458.266388313309	31.629	0.25963	31.38	31.198	31.458	-0.24883					8	4	2	0	0	0	0.094138	1	11686	11686		59.368	5.9644	1	17194000			3492	2454	1738	1759	3430	3430					0.05785187271760606
ALSEYVARL	9	Unmodified	_ALSEYVARL_					0	0	0		GALNT15|p.V252*|1|0.19|ENSG00000131386|chr3:16200662-16200662|G/-|frameshift_variant;ENSG00000131386|ENST00000339732|GALNT15	GALNT15|p.V252*|1|0.19|ENSG00000131386|chr3:16200662-16200662|G/-|frameshift_variant	GALNT15|p.V252*|1|0.19|ENSG00000131386|chr3:16200662-16200662|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	511.28778076171875	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.935	1	46.813	46.313	47.313	-0.12175								0	0	0	0.08589	1	17891	17891		60.074	10.547	1				3493	3136	1739	1760	3431	3431					0.05093742960275449
ALSGAWNDKSK	11	Unmodified	_ALSGAWNDKSK_					0	0	0			REV__tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	REV__tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	588.8040771484375	2	588.80402	1175.59349	0.52686	0.00031022	0.11189	6.5883E-05	0.63876	0.0003761	588.8039810013578	31.46	0.41574	31.089	30.868	31.283	-0.37027					15	7	3	0	0	0	0.65047	1	11414	11414		29.841	3.5724	1	7949300	+		3494	17775	1740	1761	3432	3432					0.012713250123169928
ALSGAWNDKSK	11	Unmodified	_ALSGAWNDKSK_					0	0	0			REV__tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	REV__tr|U7SSR3|U7SSR3_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01351PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	588.80402	1175.59349	0.52686	0.00031022	0.11189	6.5883E-05	0.63876	0.0003761	588.8039810013578	31.46	0.41574	31.089	30.868	31.283	-0.37027	-0.016007	-0.00014307	NaN	29.841	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7949300	+		3495	17775	1740	1761							0.012713250123169928
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S1	1	463.75079345703125	2	463.750724	925.486896	0.31332	0.0001453	-0.27762	-0.00012874	0.035706	1.6559E-05	463.7505839402766	33.27	0.62216	33.27	33.037	33.659	0					23	11	4	0	0	0	0.0063744	1	12308	12308		125.62	54.909	1	76077000			3496	5683	1741	1762	3433	3433					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S2	2	463.7510070800781	2	463.750724	925.486896	0.5238	0.00024291	-0.25109	-0.00011644	0.27271	0.00012647	463.7505901836654	33.494	0.41253	33.301	33.174	33.587	-0.19297					19	7	4	0	0	0	0.0047811	1	12433	12433		139.54	68.828	1	284320000			3497	5683	1741	1762	3434	3434					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S2	2	926.494140625	1	926.494172	925.486896	1.3398	0.0012413	-0.83156	-0.00077044	0.50821	0.00047085	926.4935648415144	33.494	0.30831	33.301	33.174	33.482	-0.19297					7	5	2	0	0	0	0.0034599	1	12442	12442		162.95	91.029	1	56428000			3498	5683	1741	1762	3435	3435					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S3	3	463.750732421875	2	463.750724	925.486896	0.36283	0.00016826	-0.33539	-0.00015554	0.027447	1.2729E-05	463.75057670926304	33.672	0.72729	33.382	33.148	33.875	-0.29013					21	13	2	0	0	0	0.0063744	1	12352	12352		125.62	54.909	1	56990000			3499	5683	1741	1762	3436	3436					0.02117194517813914
ALSGHVSTV	9	Unmodified	_ALSGHVSTV_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	HCT116MG_D190212_S2	2	435.7374267578125	2	435.737617	869.460681	-0.037119	-1.6174E-05	-0.36963	-0.00016106	-0.40674	-0.00017723	435.737457333952	26.619	0.26074	26.258	26.18	26.441	-0.36164					6	4	2	0	0	0	0.035914	1	9672	9672		81.613	28.038	1	8404500			3500	2646	1742	1763	3437	3437					0.02072925346340071
ALSGSLLGIL	10	Unmodified	_ALSGSLLGIL_					0	0	0			REV__nc|ENSG00000171365|P51795-1|CLCN5	REV__nc|ENSG00000171365|P51795-1|CLCN5	MULTI-MSMS	HCT116MG_D190212_S1	1	472.2948913574219	2	472.294768	942.574983	0.28476	0.00013449	-0.0057263	-2.7045E-06	0.27903	0.00013178	472.29473135868597	45.558	0.31311	45.558	45.347	45.66	0					12	5	3	0	0	0	0.59599	1	17296	17296		28.487	1.6032	1	38650000	+		3501	13340	1743	1764	3438	3438					0.10139815108436778
ALSGTLSGV	9	Unmodified	_ALSGTLSGV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	HCT116MG_D190212_S2	2	804.4467163085938	1	804.44616	803.438883	1.0423	0.00083849	0.6512	0.00052386	1.6935	0.0013623	804.4463043029772	40.426	0.3105	40.356	40.209	40.519	-0.069626					8	5	2	0	0	0	0.0047811	1	15262	15262		139.54	42.469	1	40654000			3502	1686	1744	1765	3439	3439					0.02930120597761743
ALSGTLSGV	9	Unmodified	_ALSGTLSGV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	HCT116MG_D190212_S3	3	804.4473266601562	1	804.44616	803.438883	0.9275	0.00074612	0.58328	0.00046922	1.5108	0.0012153	804.4463405704656	40.613	0.26036	40.312	40.163	40.423	-0.30161					6	4	2	0	0	0	0.0082751	2	15109	15026;15109		117.6	35.735	1	4146000			3503	1686	1744	1765	3440;3441	3441					0.02930120597761743
ALSIAIALPV	10	Unmodified	_ALSIAIALPV_					0	0	0			REV__SLC7A4|p.L431*|1|0.39|ENSG00000099960|chr22:21030043-21030043|G/-|frameshift_variant	REV__SLC7A4|p.L431*|1|0.39|ENSG00000099960|chr22:21030043-21030043|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	484.31219482421875	2	484.312961	966.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.927	1	35.626	35.126	36.126	-0.30042								0	0	0	0.89194	1	13257	13257		16.942	4.4107	1		+		3504	11052	1745	1766	3442	3442					0.12672692005128283
ALSKEGIVAL	10	Unmodified	_ALSKEGIVAL_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S1	1	500.8055419921875	2	500.8055	999.596446	0.24561	0.000123	0.16016	8.0208E-05	0.40577	0.00020321	500.8054885273794	44.33	0.32258	44.33	44.141	44.464	0					12	5	3	0	0	0	0.031798	1	16770	16770		100.71	25.78	1	42716000			3505	3958	1746	1767	3443	3443					0.09663200137140393
ALSKEGIVAL	10	Unmodified	_ALSKEGIVAL_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S3	3	500.8058166503906	2	500.8055	999.596446	0.72013	0.00036064	-0.20286	-0.0001016	0.51726	0.00025905	500.8052914159236	44.572	0.22997	44.264	44.123	44.353	-0.30759					9	5	2	0	0	0	0.14359	1	16671	16671		65.474	9.2966	1	11604000			3506	3958	1746	1767	3444	3444					0.09663200137140393
ALSPAQRSL	9	Unmodified	_ALSPAQRSL_					0	0	0			REV__ENSG00000185561|ENST00000330676|TLCD2	REV__ENSG00000185561|ENST00000330676|TLCD2	MULTI-MSMS	HCT116MG_D190212_S1	1	472.2402038574219	2	471.771991	941.529429	0.2729	0.00012875	1.3392	0.00063178	1.6121	0.00076053	471.7720779430615	26.475	0.31222	26.475	26.397	26.709	0					8	5	2	0	0	0	0.47829	1	9564	9564		18.135	3.5533	1	2603000	+		3507	13849	1747	1768	3445	3445					0.05632589646052111
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	HCT116MG_D190212_S1	1	490.74359130859375	2	490.743431	979.472308	0.35562	0.00017452	-0.3757	-0.00018437	-0.02008	-9.8543E-06	490.743350194352	23.915	0.41813	23.915	23.679	24.098	0					16	7	3	0	0	0	0.020353	1	8523	8523		96.111	38.64	1	18173000			3508	6544	1748	1769	3446	3446					-0.01824877630338051
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	HCT116MG_D190212_S2	2	490.74334716796875	2	490.743431	979.472308	0.4169	0.00020459	-0.39203	-0.00019239	0.024868	1.2204E-05	490.7433626202702	24.387	0.46872	24.007	23.718	24.187	-0.38003					21	8	4	0	0	0	0.020353	1	8738	8738		96.111	44.481	1	63592000			3509	6544	1748	1769	3447	3447					-0.01824877630338051
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-SECPEP	HCT116MG_D190212_S3	3	490.2462158203125	2	490.743431	979.472308	0.009307	4.5674E-06	0.38992	0.00019135	0.39922	0.00019592	490.7435853926451	24.295	0.78088	24.233	23.686	24.467	-0.061449					18	14	2	0	0	0	0.099453	1	8460	8460		66.457	18.708	1	34322000			3510	6544	1748	1769	3448	3448					-0.01824877630338051
ALSQDIPEI	9	Unmodified	_ALSQDIPEI_					0	0	0		EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4	EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant	EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	985.5197143554688	1	985.520053	984.512776	0.8389	0.00082675	-0.78078	-0.00076947	0.058124	5.7282E-05	985.5195090087082	50.444	0.41853	50.272	49.985	50.403	-0.1719					11	7	2	0	0	0	0.01405	1	19321	19321		103.35	27.593	1	23183000			3511	754	1749	1770	3449	3449					0.01990043969431099
ALSQDIPEI	9	Unmodified	_ALSQDIPEI_					0	0	0		EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant;EDC4|p.D801Mfs*15|1|0.26|ENSG00000038358|chr16:67880857-67880857|G/-|frameshift_variant;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENSG00000038358|ENST00000358933|EDC4	EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant	EDC4|p.Q792Sfs*24|1|0.37|ENSG00000038358|chr16:67880829-67880829|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	493.2632141113281	2	493.263665	984.512776	0.35222	0.00017374	-0.56112	-0.00027678	-0.2089	-0.00010304	493.26342138375776	50.392	0.52231	50.22	49.985	50.507	-0.17191					16	9	3	0	0	0	0.063511	1	19335	19335		68.081	11.904	1	19493000			3512	754	1749	1770	3450	3450					0.01990043969431099
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MSMS	HCT116MG_D190212_S2	2	462.7792663574219	2	462.779285	923.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.108	1	53.919	53.419	54.419	-0.1894								0	0	0	0.24084	1	20824	20824		44.407	0	1				3513	8272	1750	1771	3451	3451					0.0791866179419003
ALSSSPEAAA	10	Unmodified	_ALSSSPEAAA_					0	0	0		ENST00000357736.8_1_17:79878238-79878646:-|nuORF	ENST00000357736.8_1_17:79878238-79878646:-|nuORF	ENST00000357736.8_1_17:79878238-79878646:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	452.22369384765625	2	452.224539	902.434526	0.021729	9.8264E-06	-0.50281	-0.00022738	-0.48108	-0.00021755	452.22412803030574	18.084	0.20867	17.728	17.65	17.858	-0.35647					6	3	2	0	0	0	0.079351	1	6229	6229		78.149	10.069	1	3336700			3514	7312	1751	1772	3452	3452					-0.020593886158053465
ALSSSTMTDT	10	Unmodified	_ALSSSTMTDT_					0	0	0			REV__SEMA3B|p.R418Afs*41|1|0.4|ENSG00000012171|chr3:50274471-50274471|G/-|frameshift_variant	REV__SEMA3B|p.R418Afs*41|1|0.4|ENSG00000012171|chr3:50274471-50274471|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	507.1748962402344	2	507.226422	1012.43829	0.42675	0.00021646	-0.27494	-0.00013946	0.15181	7.7002E-05	507.2262169344855	31.061	0.72404	30.794	30.612	31.336	-0.26704					24	13	3	0	0	0	0.30856	1	11469	11469		6.7232	6.7232	1	89309000	+		3515	17503	1752	1773	3453	3453					-0.06743086904259599
ALSSSTMTDT	10	Unmodified	_ALSSSTMTDT_					0	0	0			REV__SEMA3B|p.R418Afs*41|1|0.4|ENSG00000012171|chr3:50274471-50274471|G/-|frameshift_variant	REV__SEMA3B|p.R418Afs*41|1|0.4|ENSG00000012171|chr3:50274471-50274471|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	507.226422	1012.43829	0.54625	0.00027707	-0.11278	-5.7205E-05	0.43347	0.00021987	507.22627510840306	30.889	0.36427	30.889	30.659	31.023	0	0.00095934	-9.2779E-05	NaN	6.7232	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18781000	+		3516	17503	1752	1773							-0.06743086904259599
ALSSTVRSV	9	Unmodified	_ALSSTVRSV_					0	0	0			REV__ENSG00000170385|ENST00000367001|SLC30A1	REV__ENSG00000170385|ENST00000367001|SLC30A1	MULTI-MSMS	HCT116MG_D190212_S2	2	460.264404296875	2	460.263999	918.513445	0.25424	0.00011702	0.38639	0.00017784	0.64062	0.00029486	460.2641121106296	34.945	0.31062	34.787	34.657	34.968	-0.15834					8	5	2	0	0	0	0.090581	1	13043	13043		60.074	2.3519	1	16664000	+		3517	13295	1753	1774	3454	3454					0.05092883409145088
ALSVLKYML	9	Unmodified	_ALSVLKYML_					0	0	0		USP35|p.A325T|1|0.17|ENSG00000118369|chr11:78200169-78200169|G/A|missense_variant;ENST00000530546.5_1_11:77911190-77917082:+|nuORF;USP35|p.M354Wfs*119|1|0.4|ENSG00000118369|chr11:78200664-78200664|C/-|frameshift_variant;USP35|p.T655Pfs*23|1|0.33|ENSG00000118369|chr11:78209810-78209810|C/-|frameshift_variant;nc|ENSG00000118369|Q9P2H5-2|USP35;ENSG00000118369|ENST00000529308|USP35	USP35|p.A325T|1|0.17|ENSG00000118369|chr11:78200169-78200169|G/A|missense_variant	USP35|p.A325T|1|0.17|ENSG00000118369|chr11:78200169-78200169|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.1390380859375	2	519.306821	1036.59909	0.4713	0.00024475	1.0302	0.000535	1.5015	0.00077975	519.3072710381274	47.329	0.62056	47.207	46.922	47.543	-0.12175					16	11	2	0	0	0	0.22203	1	18167	18167		12.532	0	1	10066000			3518	2607	1754	1775	3455	3455					0.08225332270444596
ALSVNVIK	8	Unmodified	_ALSVNVIK_					0	0	0			REV__ENST00000510738.2_1_12:19413894-19459437:+|nuORF	REV__ENST00000510738.2_1_12:19413894-19459437:+|nuORF	MSMS	HCT116MG_D190212_S1	1	422.26751708984375	2	422.268553	842.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.485	1	54.485	53.985	54.985	0								0	0	0	0.8837	1	20895	20895		2.5775	0.27475	1		+		3519	10625	1755	1776	3456	3456					0.09499276765473041
ALTAAATLSV	10	Unmodified	_ALTAAATLSV_					0	0	0		ENST00000509549.5_1_22:19341546-19435194:-|nuORF;ENSG00000100084|ENST00000263208|HIRA	ENST00000509549.5_1_22:19341546-19435194:-|nuORF	ENST00000509549.5_1_22:19341546-19435194:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	458.77105712890625	2	459.26875	916.522947	0.46172	0.00021205	1.6107	0.00073976	2.0724	0.00095181	459.2696577140419	37.305	0.31208	37.003	36.821	37.133	-0.30137					9	5	2	0	0	0	0.062981	1	13794	13794		85.272	7.1226	1	7335000			3520	1662	1756	1777	3457	3457					0.06134651694662807
ALTAAATLSV	10	Unmodified	_ALTAAATLSV_					0	0	0		ENST00000509549.5_1_22:19341546-19435194:-|nuORF;ENSG00000100084|ENST00000263208|HIRA	ENST00000509549.5_1_22:19341546-19435194:-|nuORF	ENST00000509549.5_1_22:19341546-19435194:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	458.7715148925781	2	459.26875	916.522947	0.02965	1.3617E-05	1.4883	0.00068352	1.5179	0.00069714	459.2696636150317	37.423	0.2051	37.039	36.874	37.079	-0.3839					5	3	2	0	0	0	0.19481	1	13730	13730		39.95	10.868	1	2822100			3521	1662	1756	1777	3458	3458					0.06134651694662807
ALTERQRDLEM	11	Unmodified	_ALTERQRDLEM_					0	0	0		ENST00000578456.1_1_17:9820547-9830233:-|nuORF;nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7	ENST00000578456.1_1_17:9820547-9830233:-|nuORF	ENST00000578456.1_1_17:9820547-9830233:-|nuORF	MSMS	HCT116MG_D190212_S3	3	681.3435668945312	2	681.345726	1360.6769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.332	1	54.036	53.536	54.536	-0.29587								0	0	0	0.95196	1	20585	20585		5.2969	0.96765	1				3522	842	1757	1778	3459	3459					0.010986933978756497
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	HCT116MG_D190212_S1	1	484.75640869140625	2	484.756007	967.497461	0.35122	0.00017026	0.39571	0.00019182	0.74693	0.00036208	484.75616797758016	35.603	0.25791	35.603	35.424	35.682	0					6	4	2	0	0	0	0.004194	1	13251	13251		147.83	62.474	1	23110000			3523	3324	1758	1779	3460	3460					0.012411771722327103
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	HCT116MG_D190212_S2	2	484.7560119628906	2	484.756007	967.497461	0.266	0.00012894	0.086473	4.1918E-05	0.35247	0.00017086	484.7559568664209	35.658	0.30849	35.515	35.386	35.695	-0.14245					12	5	3	0	0	0	0.0036294	1	13310	13310		156.16	63.334	1	125110000			3524	3324	1758	1779	3461	3461					0.012411771722327103
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	HCT116MG_D190212_S2	2	968.5048828125	1	968.504737	967.497461	0.71259	0.00069015	-0.28693	-0.00027789	0.42566	0.00041226	968.5040700749748	35.658	0.20582	35.515	35.386	35.592	-0.14245					5	3	2	0	0	0	0.027492	1	13334	13334		88.904	36.635	1	23594000			3525	3324	1758	1779	3462	3462					0.012411771722327103
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	HCT116MG_D190212_S3	3	484.75579833984375	2	484.756007	967.497461	0.28158	0.0001365	-0.34533	-0.0001674	-0.063751	-3.0904E-05	484.7558089190215	35.835	0.28959	35.535	35.388	35.678	-0.30042					10	6	2	0	0	0	0.0054498	1	13226	13226		133.7	59.279	1	21083000			3526	3324	1758	1779	3463	3463					0.012411771722327103
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MSMS	HCT116MG_D190212_S4	4	484.75665283203125	2	484.756007	967.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.951	1	35.565	35.065	36.065	-0.38588								0	0	0	0.0037621	1	13137	13137		120.45	56.214	1				3527	3324	1758	1779	3464	3464					0.012411771722327103
ALTLHHVVLL	10	Unmodified	_ALTLHHVVLL_					0	0	0		nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;KIAA1549L|p.T1376Pfs*16|1|0.38|ENSG00000110427|chr11:33606772-33606772|C/-|frameshift_variant;KIAA1549L|p.T1376Hfs*62|1|0.19|ENSG00000110427|chr11:33606771-33606772|-/C|frameshift_variant;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	MSMS	HCT116MG_D190212_S2	2	558.3490600585938	2	558.350409	1114.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.528	1	49.364	48.864	49.864	-0.16369								0	0	0	0.92272	1	18958	18958		10.824	0.75	1				3528	2246	1759	1780	3465	3465					0.13350874536376978
ALTPVVVTL	9	Unmodified	_ALTPVVVTL_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	HCT116MG_D190212_S1	1	913.5367431640625	1	912.576445	911.569169	0.89974	0.00082108	-0.62337	-0.00056888	0.27637	0.00025221	912.5759971841027	55.58	0.25713	55.58	55.452	55.709	0					6	4	2	0	0	0	0.1037	1	21362	21362		57.471	2.6978	1	23399000			3529	3350	1760	1781	3466	3466					0.10984716596760791
ALTPVVVTL	9	Unmodified	_ALTPVVVTL_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	HCT116MG_D190212_S2	2	912.5771484375	1	912.576445	911.569169	0.74353	0.00067853	-0.09094	-8.299E-05	0.65259	0.00059554	912.5764173422783	55.746	0.20766	55.561	55.431	55.639	-0.18565					7	3	3	0	0	0	0.0082751	1	21517	21517		117.6	24.777	1	76937000			3530	3350	1760	1781	3467	3467					0.10984716596760791
ALTRNRRTRRW	11	Unmodified	_ALTRNRRTRRW_					0	0	0		ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	496.29290771484375	3	495.958908	1484.85489	0.34039	0.00016882	0.17886	8.8705E-05	0.51925	0.00025753	495.9588952868974	54.881	1.792	54.694	53.689	55.481	-0.18797					100	34	4	0	0	0	0.74191	1	21290	21290		0.40827	0.041592	1	178030000			3531	881	1761	1782	3468	3468					0.1318616922255842
ALTVLHPL	8	Unmodified	_ALTVLHPL_					0	0	0		YIPF5|p.T107A|1|0.34|ENSG00000145817|chr5:144164221-144164221|T/C|missense_variant	YIPF5|p.T107A|1|0.34|ENSG00000145817|chr5:144164221-144164221|T/C|missense_variant	YIPF5|p.T107A|1|0.34|ENSG00000145817|chr5:144164221-144164221|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	432.27020263671875	2	432.271096	862.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.973	1	26.973	26.473	27.473	0								0	0	0	0.8837	1	9768	9768		6.3541	0	1				3532	18704	1762	1783	3469	3469					0.09087580628079195
ALVKEGILK	9	Unmodified	_ALVKEGILK_					0	0	0			REV__tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	REV__tr|U7SPA0|U7SPA0_FUSNUMethionine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=metGPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	485.8185729980469	2	485.81841	969.622267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.771	1	36.656	36.156	37.156	-0.11478								0	0	0	0.55657	1	13761	13761		26.021	3.3626	1		+		3533	17746	1763	1784	3470	3470					0.1362409437944052
ALVQDLAKA	9	Unmodified	_ALVQDLAKA_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	HCT116MG_D190212_S2	2	464.7767333984375	2	464.776742	927.538931	0.12569	5.8416E-05	1.0573	0.0004914	1.183	0.00054981	464.77694017169864	38.403	0.31678	38.31	38.167	38.483	-0.09301					8	5	2	0	0	0	0.040027	1	14435	14435		79.596	19.207	1	16924000			3534	3261	1764	1785	3471	3471					0.07226357931551775
ALVTKLRRLR	10	Unmodified	_ALVTKLRRLR_					0	0	0			REV__BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	REV__BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	409.27923583984375	3	409.278696	1224.81426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.981	1	59.981	59.481	60.481	0								0	0	0	0.97045	1	23115	23115		0.15932	0	1		+		3535	10033	1765	1786	3472	3472					0.21084434850263278
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;HEXB|p.M522Kfs*9|1|0.15|ENSG00000049860|chr5:74720697-74720698|-/AA|frameshift_variant;ENSG00000049860|ENST00000261416|HEXB	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	MSMS	HCT116MG_D190212_S1	1	450.26300048828125	2	450.263468	898.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.067	1	42.067	41.567	42.567	0								0	0	0	0.084787	1	15856	15856		60.39	2.9182	1				3536	1047	1766	1787	3473	3473					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;HEXB|p.M522Kfs*9|1|0.15|ENSG00000049860|chr5:74720697-74720698|-/AA|frameshift_variant;ENSG00000049860|ENST00000261416|HEXB	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	899.5202026367188	1	899.519659	898.512382	0.97294	0.00087518	0.1071	9.634E-05	1.08	0.00097152	899.5196002591767	42.158	0.62286	42.09	41.808	42.431	-0.068199					25	11	4	0	0	0	0.035914	1	15920	15920		81.613	17.377	1	273230000			3537	1047	1766	1787	3474	3474					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;HEXB|p.M522Kfs*9|1|0.15|ENSG00000049860|chr5:74720697-74720698|-/AA|frameshift_variant;ENSG00000049860|ENST00000261416|HEXB	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	450.2637939453125	2	450.263468	898.512382	0.1207	5.4346E-05	0.36512	0.0001644	0.48582	0.00021875	450.2635451233979	42.124	0.41375	42.056	41.861	42.274	-0.068199					11	7	2	0	0	0	0.019399	1	15944	15944		97.075	15.211	1	78828000			3538	1047	1766	1787	3475	3475					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;HEXB|p.M522Kfs*9|1|0.15|ENSG00000049860|chr5:74720697-74720698|-/AA|frameshift_variant;ENSG00000049860|ENST00000261416|HEXB	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	899.5202026367188	1	899.519659	898.512382	0.9617	0.00086507	-0.072367	-6.5095E-05	0.88934	0.00079998	899.5194301404379	42.317	0.4693	42.013	41.832	42.301	-0.30352					14	8	3	0	0	0	0.043314	1	15763	15763		77.984	3.5616	1	19220000			3539	1047	1766	1787	3476	3476					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;HEXB|p.M522Kfs*9|1|0.15|ENSG00000049860|chr5:74720697-74720698|-/AA|frameshift_variant;ENSG00000049860|ENST00000261416|HEXB	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	450.263671875	2	450.263468	898.512382	0.14795	6.6618E-05	0.10656	4.7979E-05	0.25451	0.0001146	450.263389603047	42.334	0.31266	42.03	41.832	42.144	-0.30352					8	5	2	0	0	0	0.058138	1	15770	15770		70.716	7.1527	1	2888300			3540	1047	1766	1787	3477	3477					0.05906669040234647
ALWDTAGQEDY	11	Unmodified	_ALWDTAGQEDY_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;RHOA|p.S85Ffs*6|1|0.36|ENSG00000067560|chr3:49368451-49368452|-/A|frameshift_variant;ENSG00000143878|ENST00000272233|RHOB	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	HCT116MG_D190212_S1	1	634.7757568359375	2	634.775125	1267.5357	0.84885	0.00053883	0.22096	0.00014026	1.0698	0.00067909	634.7751590276744	31.031	0.26042	31.031	30.919	31.18	0					5	4	2	0	0	0	0.70991	1	11418	11418		18.146	5.9057	1	4598300			3541	1187	1767	1788	3478	3478					-0.08736981703737001
ALWEDEGVRA	10	Unmodified	_ALWEDEGVRA_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENSG00000087460|ENST00000371085|GNAS;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	HCT116MG_D190212_S1	1	573.2833251953125	2	573.28292	1144.55129	0.073011	4.1856E-05	-1.0544	-0.00060448	-0.98141	-0.00056262	573.281773744989	40.847	0.30669	40.847	40.591	40.897	0					11	5	3	0	0	0	0.057153	1	15356	15356		82.529	40.574	1	25805000			3542	9394	1768	1789	3479	3479					-0.015206503960371265
ALWEDEGVRA	10	Unmodified	_ALWEDEGVRA_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENSG00000087460|ENST00000371085|GNAS;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	HCT116MG_D190212_S2	2	573.2833251953125	2	573.28292	1144.55129	0.54597	0.000313	-0.025368	-1.4543E-05	0.5206	0.00029845	573.282809884628	40.769	0.31036	40.699	40.571	40.881	-0.069626					12	5	3	0	0	0	0.027428	1	15408	15408		106.94	57.386	1	55969000			3543	9394	1768	1789	3480	3480					-0.015206503960371265
ALWEGARS	8	Unmodified	_ALWEGARS_					0	0	0		ENST00000398061.5_1_21:45379519-45387977:+|nuORF	ENST00000398061.5_1_21:45379519-45387977:+|nuORF	ENST00000398061.5_1_21:45379519-45387977:+|nuORF	MSMS	HCT116MG_D190212_S3	3	445.22943115234375	2	445.229959	888.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.504	1	25.398	24.898	25.898	-0.10618								0	0	0	0.8837	1	9108	9108		9.3474	0.75416	1				3544	7680	1769	1790	3481	3481					-0.0033194145086099525
ALWERIEGV	9	Unmodified	_ALWERIEGV_					0	0	0		CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant;CARD10|p.K896Rfs*9|1|0.27|ENSG00000100065|chr22:37492501-37492501|G/-|frameshift_variant;ENSG00000100065|ENST00000251973|CARD10	CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant	CARD10|p.S527Vfs*31|2|0.24|ENSG00000100065|chr22:37504242-37504242|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	536.5559692382812	2	536.792924	1071.57129	0.35617	0.00019119	-0.78523	-0.00042151	-0.42907	-0.00023032	537.2938211018845	49.787	0.20823	49.472	49.342	49.55	-0.31525					5	3	2	0	0	0	0.2333	1	18759	18759		47.594	18.513	1	2864300			3545	326	1770	1791	3482	3482					0.03837145334568959
ALWGPDLQGP	10	Unmodified	_ALWGPDLQGP_					0	0	0		ZNF629|p.P77Qfs*23|1|0.59|ENSG00000102870|chr16:30784098-30784098|G/-|frameshift_variant;ENSG00000102870|ENST00000262525|ZNF629	ZNF629|p.P77Qfs*23|1|0.59|ENSG00000102870|chr16:30784098-30784098|G/-|frameshift_variant	ZNF629|p.P77Qfs*23|1|0.59|ENSG00000102870|chr16:30784098-30784098|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2726440429688	2	527.271824	1052.5291	0.26831	0.00014147	0.72596	0.00038278	0.99427	0.00052425	527.2723192513259	53.233	0.20736	53.044	52.913	53.121	-0.18922					6	3	2	0	0	0	0.48679	1	20492	20492		36.127	7.6402	1	16561000			3546	1854	1771	1792	3483	3483					0.004931699261760514
ALWTGMHTI	9	Unmodified	_ALWTGMHTI_					0	0	0		ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	515.2627563476562	2	515.262945	1028.51134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.066	1	50.066	49.566	50.566	0								0	0	0	0.034849	1	19094	19094		77.984	33.577	1				3547	131	1772	1793	3484	3484					-0.0017786860032629193
ALWTGMHTI	9	Unmodified	_ALWTGMHTI_					0	0	0		ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	515.262939453125	2	515.262945	1028.51134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.243	1	50.071	49.571	50.571	-0.1719								0	0	0	0.038654	1	19252	19252		74.423	40.021	1				3548	131	1772	1793	3485	3485					-0.0017786860032629193
ALYDATYET	9	Unmodified	_ALYDATYET_					0	0	0		ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1;ENST00000508046.1_1_5:68609355-68609532:-|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1046.4693603515625	1	1046.46768	1045.46041	0.80703	0.00084453	0.13363	0.00013984	0.94067	0.00098438	1046.467948809016	37.016	0.31105	37.016	36.835	37.146	0					12	5	3	0	0	0	0.11731	1	13823	13823		54.774	27.89	1	47281000			3549	5260	1773	1794	3486	3486					-0.06050539164198199
ALYDATYET	9	Unmodified	_ALYDATYET_					0	0	0		ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1;ENST00000508046.1_1_5:68609355-68609532:-|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1046.4681396484375	1	1046.46768	1045.46041	0.64182	0.00067164	0.10723	0.00011221	0.74905	0.00078385	1046.4677154275878	37.103	0.46389	36.988	36.757	37.221	-0.11478					19	8	3	0	0	0	0.11731	1	13882	13882		54.774	20.372	1	181280000			3550	5260	1773	1794	3487	3487					-0.06050539164198199
ALYDATYET	9	Unmodified	_ALYDATYET_					0	0	0		ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1;ENST00000508046.1_1_5:68609355-68609532:-|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1046.46826171875	1	1046.46768	1045.46041	0.63076	0.00066007	-0.18494	-0.00019353	0.44582	0.00046653	1046.4673868821596	37.257	0.31208	36.955	36.821	37.133	-0.30137					11	5	3	0	0	0	0.21251	1	13805	13805		39.957	11.47	1	8957600			3551	5260	1773	1794	3488	3488					-0.06050539164198199
ALYDENTKL	9	Unmodified	_ALYDENTKL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant;JAK1|p.K142Rfs*26|1|0.07|ENSG00000162434|chr1:64873428-64873428|T/-|frameshift_variant;JAK1|p.N339Ifs*3|2|0.36|ENSG00000162434|chr1:64864947-64864947|T/-|frameshift_variant;JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7748413085938	2	533.774396	1065.53424	0.40117	0.00021414	-0.49036	-0.00026174	-0.08919	-4.7607E-05	533.7743554526289	36.176	0.26342	36.176	35.993	36.257	0					6	4	2	0	0	0	0.066823	1	13491	13491		66.457	7.7779	1	8694300			3552	4522	1774	1795	3489	3489					0.004094289981367183
ALYDENTKL	9	Unmodified	_ALYDENTKL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant;JAK1|p.K142Rfs*26|1|0.07|ENSG00000162434|chr1:64873428-64873428|T/-|frameshift_variant;JAK1|p.N339Ifs*3|2|0.36|ENSG00000162434|chr1:64864947-64864947|T/-|frameshift_variant;JAK1|p.L346Tfs*4|1|0.28|ENSG00000162434|chr1:64864927-64864928|-/T|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7745971679688	2	533.774396	1065.53424	0.58065	0.00030994	0.050567	2.6991E-05	0.63122	0.00033693	533.7743667512	35.663	0.87609	35.521	35.283	36.16	-0.14245					37	16	5	0	0	0	0.16306	1	13553	13553		45.7	7.7256	1	855610000			3553	4522	1774	1795	3490	3490					0.004094289981367183
ALYEDRYLL	9	Unmodified	_ALYEDRYLL_					0	0	0		ASS1|p.Q138Rfs*2|2|0.18|ENSG00000130707|chr9:130464154-130464154|C/-|frameshift_variant;ENSG00000130707|ENST00000352480|ASS1	ASS1|p.Q138Rfs*2|2|0.18|ENSG00000130707|chr9:130464154-130464154|C/-|frameshift_variant	ASS1|p.Q138Rfs*2|2|0.18|ENSG00000130707|chr9:130464154-130464154|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	578.306640625	2	578.305864	1154.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.204	1	50.032	49.532	50.532	-0.1719								0	0	0	0.37224	1	19236	19236		34.932	17.819	1				3554	204	1775	1796	3491	3491					0.02605994786199517
ALYGKTEVV	9	Unmodified	_ALYGKTEVV_					0	0	0		CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2	CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant	CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	490.2767333984375	2	490.276575	978.538597	0.2775	0.00013605	0.22579	0.0001107	0.5033	0.00024675	490.27655904513006	33.91	0.20776	33.735	33.604	33.812	-0.17512					6	3	2	0	0	0	0.28073	1	12628	12628		32.786	4.2988	1	17194000			3555	328	1776	1797	3492	3492					0.048469382116991255
ALYGKTEVV	9	Unmodified	_ALYGKTEVV_					0	0	0		CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2	CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant	CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	489.7503356933594	2	490.276575	978.538597	0.14803	7.2574E-05	-0.097979	-4.8037E-05	0.050048	2.4537E-05	490.2763323471694	34.054	0.15639	33.759	33.663	33.819	-0.29419					4	2	2	0	0	0	0.18296	1	12541	12541		39.95	5.8473	1	2724200			3556	328	1776	1797	3493	3493					0.048469382116991255
ALYGKTEVV	9	Unmodified	_ALYGKTEVV_					0	0	0		CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant;nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2	CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant	CASKIN2|p.P339Rfs*95|3|0.33|ENSG00000177303|chr17:75504988-75504988|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	490.276575	978.538597	0.35935	0.00017618	-0.30367	-0.00014888	0.055679	2.7298E-05	490.2763295451977	33.685	0.20712	33.685	33.556	33.763	0	-0.041657	-0.00023266	NaN	39.95	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5259100			3557	328	1776	1797							0.048469382116991255
ALYIFWLA	8	Unmodified	_ALYIFWLA_					0	0	0		tr|U7SSC6|U7SSC6_FUSNUCysteine/O-acetylserineeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01686PE=4SV=1	tr|U7SSC6|U7SSC6_FUSNUCysteine/O-acetylserineeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01686PE=4SV=1	tr|U7SSC6|U7SSC6_FUSNUCysteine/O-acetylserineeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01686PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	498.279296875	2	498.781296	995.54804	0.39413	0.00019659	-0.19528	-9.7404E-05	0.19885	9.9182E-05	498.781160796558	45.888	0.30829	45.787	45.658	45.966	-0.1014					8	5	2	0	0	0	0.30658	1	17466	17466		17.087	5.4463	1	30688000			3558	18412	1777	1798	3494	3494					0.050087512878803864
ALYSKGILL	9	Unmodified	_ALYSKGILL_					0	0	0		NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	489.2338562011719	2	489.305136	976.595718	0.32611	0.00015957	0.53075	0.0002597	0.85686	0.00041927	489.3056674661417	50.444	0.31713	50.272	50.138	50.456	-0.1719					6	5	2	0	0	0	0.12897	1	19342	19342		57.722	11.701	1	11645000			3559	2394	1778	1799	3495	3495					0.10648405488097978
ALYVAVVNV	9	Unmodified	_ALYVAVVNV_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	HCT116MG_D190212_S1	1	947.5560302734375	1	947.556044	946.548768	0.95989	0.00090955	-0.77879	-0.00073795	0.1811	0.0001716	947.555026258469	53.178	0.20487	53.178	53.05	53.255	0					5	3	2	0	0	0	0.058138	1	20368	20368		70.716	26.309	1	21916000			3560	2026	1779	1800	3496	3496					0.07335545936950894
ALYVAVVNV	9	Unmodified	_ALYVAVVNV_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-MSMS	HCT116MG_D190212_S2	2	947.5558471679688	1	947.556044	946.548768	0.53233	0.00050442	-0.11735	-0.0001112	0.41498	0.00039322	947.5557731505781	53.387	0.30778	53.198	53.018	53.326	-0.18922					8	5	2	0	0	0	0.050632	1	20541	20541		74.396	26.05	1	21158000			3561	2026	1779	1800	3497	3497					0.07335545936950894
AMAARPHSI	9	Unmodified	_AMAARPHSI_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	HCT116MG_D190212_S2	2	476.5637512207031	2	477.252911	952.49127	0.36806	0.00017566	0.025503	1.2172E-05	0.39356	0.00018783	477.2530068497507	22.462	0.20726	22.077	21.947	22.154	-0.3852					6	3	2	0	0	0	0.1898	1	7948	7948		38.176	11.834	1	7413000			3562	2769	1780	1801	3498	3498					0.013123804597285016
AMAASPHAV	9	Unmodified	_AMAASPHAV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MSMS	HCT116MG_D190212_S1	1	427.7132568359375	2	427.713088	853.411622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.73	1	23.73	23.23	24.23	0								0	0	0	0.048716	1	8464	8464		70.716	30.758	1				3563	5472	1781	1802	3499	3499					-0.020946862142636746
AMAASPHAV	9	Unmodified	_AMAASPHAV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MSMS	HCT116MG_D190212_S2	2	427.71307373046875	2	427.713088	853.411622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.233	1	23.853	23.353	24.353	-0.38003								0	0	0	0.11425	1	8674	8674		53.576	11.481	1				3564	5472	1781	1802	3500	3500					-0.020946862142636746
AMAEEIRRL	9	Unmodified	_AMAEEIRRL_					0	0	0		ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-MSMS	HCT116MG_D190212_S2	2	544.7977294921875	2	544.797683	1087.58081	0.61947	0.00033749	-0.35029	-0.00019084	0.26918	0.00014665	544.7976861239144	34.842	0.31105	34.683	34.554	34.865	-0.15834					7	5	2	0	0	0	0.077982	1	13006	13006		62.573	18.714	1	20003000			3565	2528	1782	1803	3501	3501					0.04052590348442209
AMAEGKITV	9	Unmodified	_AMAEGKITV_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	HCT116MG_D190212_S1	1	460.2491455078125	2	460.249503	918.484453	0.14778	6.8016E-05	-0.062755	-2.8883E-05	0.085025	3.9133E-05	460.24930192395425	33.685	0.20712	33.685	33.556	33.763	0					6	3	2	0	0	0	0.34272	1	12504	12504		26.268	1.2772	1	5863300			3566	2618	1783	1804	3502	3502					0.02195022788487222
AMAEMVLQV	9	Unmodified	_AMAEMVLQV_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	HCT116MG_D190212_S2	2	496.25115966796875	2	496.251188	990.487824	0.34649	0.00017194	-0.075984	-3.7707E-05	0.2705	0.00013424	496.25128239917774	54.822	0.20531	54.634	54.509	54.714	-0.18797					7	3	3	0	0	0	0.43775	1	21127	21127		20.454	4.6064	1	22717000			3567	878	1784	1805	3503	3503					-0.007800504291594734
AMAEMVLQV	9	Unmodified	_AMAEMVLQV_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	496.251188	990.487824	0.46471	0.00023061	0.50079	0.00024852	0.9655	0.00047913	496.2514167463856	54.561	0.20309	54.561	54.434	54.637	0	-0.036128	0.00019527	NaN	20.454	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27177000			3568	878	1784	1805							-0.007800504291594734
AMAGTLLGA	9	Unmodified	_AMAGTLLGA_					0	0	0		nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3039642-3048038:-|nuORF	nc|ENSG00000110619|P49589-2|CARS1	nc|ENSG00000110619|P49589-2|CARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	804.4290771484375	1	804.428401	803.421125	0.84222	0.0006775	-0.30061	-0.00024182	0.5416	0.00043568	804.4283059359138	46.299	0.30959	46.188	46.008	46.317	-0.11121					8	5	2	0	0	0	0.058138	1	17633	17633		70.716	13.244	1	31863000			3569	2253	1785	1806	3504	3504					0.011550820712500354
AMAGTLLGA	9	Unmodified	_AMAGTLLGA_					0	0	0		nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3039642-3048038:-|nuORF	nc|ENSG00000110619|P49589-2|CARS1	nc|ENSG00000110619|P49589-2|CARS1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	804.428401	803.421125	1.0681	0.00085923	-0.23814	-0.00019156	0.82999	0.00066767	804.4280286055553	46.517	0.30866	46.205	46.026	46.335	-0.31237	0.0082611	1.525E-05	NaN	70.716	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2009000			3570	2253	1785	1806							0.011550820712500354
AMASHLTST	9	Unmodified	_AMASHLTST_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S1	1	459.7210693359375	2	459.72111	917.427666	0.05276	2.4255E-05	0.28546	0.00013123	0.33822	0.00015549	459.7212071098556	23.392	0.20892	23.392	23.262	23.471	0					5	3	2	0	0	0	0.057285	1	8341	8341		71.134	38.828	1	3255000			3571	5313	1786	1807	3505	3505					-0.034350247680322354
AMCWARVQP	9	Unmodified	_AMCWARVQP_					0	0	0			REV__ENST00000373209.2_1_10:72360428-72360569:-|nuORF	REV__ENST00000373209.2_1_10:72360428-72360569:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7356567382812	2	531.254597	1060.49464	0.37309	0.00019821	0.31284	0.0001662	0.68593	0.0003644	531.7563574329347	21.393	0.20658	21.01	20.859	21.065	-0.38288					5	3	2	0	0	0	0.57626	1	7493	7493		12.532	0	1	9923600	+		3572	15186	1787	1808	3506	3506					-0.033186927579208714
AMDPVSVSY	9	Unmodified	_AMDPVSVSY_					0	0	0		KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant;KLF3|p.Y107Ifs*72|1|0.36|ENSG00000109787|chr4:38688838-38688839|-/A|frameshift_variant;nc|ENSG00000109787|P57682-2|KLF3;KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant;KLF3|p.P226Rfs*52|3|0.26|ENSG00000109787|chr4:38689855-38689855|C/-|frameshift_variant;ENSG00000109787|ENST00000261438|KLF3	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	968.9600219726562	1	968.43936	967.432083	1.0133	0.00098137	0.14164	0.00013717	1.155	0.0011185	968.4395561624037	41.472	0.2606	41.472	41.289	41.55	0					9	4	3	0	0	0	0.020181	1	15626	15626		96.285	60.241	1	18953000			3573	2218	1788	1809	3507	3507					-0.05293560345114656
AMDPVSVSY	9	Unmodified	_AMDPVSVSY_					0	0	0		KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant;KLF3|p.Y107Ifs*72|1|0.36|ENSG00000109787|chr4:38688838-38688839|-/A|frameshift_variant;nc|ENSG00000109787|P57682-2|KLF3;KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant;KLF3|p.P226Rfs*52|3|0.26|ENSG00000109787|chr4:38689855-38689855|C/-|frameshift_variant;ENSG00000109787|ENST00000261438|KLF3	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	968.4402465820312	1	968.43936	967.432083	0.781	0.00075636	0.20131	0.00019496	0.98232	0.00095131	968.439414938132	41.541	0.41153	41.473	41.293	41.705	-0.068199					12	7	2	0	0	0	0.016134	1	15722	15722		100.37	55.964	1	150410000			3574	2218	1788	1809	3508	3508					-0.05293560345114656
AMDPVSVSY	9	Unmodified	_AMDPVSVSY_					0	0	0		KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant;KLF3|p.Y107Ifs*72|1|0.36|ENSG00000109787|chr4:38688838-38688839|-/A|frameshift_variant;nc|ENSG00000109787|P57682-2|KLF3;KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant;KLF3|p.P226Rfs*52|3|0.26|ENSG00000109787|chr4:38689855-38689855|C/-|frameshift_variant;ENSG00000109787|ENST00000261438|KLF3	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	484.7235412597656	2	484.723318	967.432083	0.3326	0.00016122	0.10869	5.2684E-05	0.44129	0.0002139	484.7232940927683	41.592	0.25568	41.523	41.345	41.601	-0.068199					8	4	2	0	0	0	0.071351	1	15739	15739		64.236	35.749	1	17140000			3575	2218	1788	1809	3509	3509					-0.05293560345114656
AMDPVSVSY	9	Unmodified	_AMDPVSVSY_					0	0	0		KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant;KLF3|p.Y107Ifs*72|1|0.36|ENSG00000109787|chr4:38688838-38688839|-/A|frameshift_variant;nc|ENSG00000109787|P57682-2|KLF3;KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant;KLF3|p.P226Rfs*52|3|0.26|ENSG00000109787|chr4:38689855-38689855|C/-|frameshift_variant;ENSG00000109787|ENST00000261438|KLF3	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	968.43994140625	1	968.43936	967.432083	0.42963	0.00041607	0.18256	0.0001768	0.61219	0.00059287	968.439263474643	41.769	0.23046	41.466	41.342	41.572	-0.30257					14	6	3	0	0	0	0.035914	1	15529	15529		81.613	45.569	1	21806000			3576	2218	1788	1809	3510	3510					-0.05293560345114656
AMDPVSVSY	9	Oxidation (M)	_AM(Oxidation (M))DPVSVSY_		AM(1)DPVSVSY		AM(52)DPVSVSY	0	0	1		KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant;KLF3|p.Y107Ifs*72|1|0.36|ENSG00000109787|chr4:38688838-38688839|-/A|frameshift_variant;nc|ENSG00000109787|P57682-2|KLF3;KLF3|p.Q227Afs*37|1|0.46|ENSG00000109787|chr4:38689854-38689855|-/C|frameshift_variant;KLF3|p.P226Rfs*52|3|0.26|ENSG00000109787|chr4:38689855-38689855|C/-|frameshift_variant;ENSG00000109787|ENST00000261438|KLF3	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	KLF3|p.K106Nfs*21|2|0.36|ENSG00000109787|chr4:38688839-38688839|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	984.4357299804688	1	984.434274	983.426998	0.49244	0.00048478	0.57392	0.00056498	1.0664	0.0010498	984.4349445280169	36.108	0.26017	35.807	35.678	35.938	-0.30042					8	4	2	0	0	0	0.12994	1	13350	13350		52.268	30.522	1	4647500			3577	2218	1788	1810	3511	3511		44			-0.06537864207723487
AMDVYKNLY	9	Oxidation (M)	_AM(Oxidation (M))DVYKNLY_		AM(1)DVYKNLY		AM(120)DVYKNLY	0	0	1		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S1	1	566.7716674804688	2	566.7708	1131.52705	0.29437	0.00016684	0.15322	8.684E-05	0.44759	0.00025368	566.7708366471074	36.391	0.31759	36.391	36.257	36.574	0					11	5	3	0	0	0	0.0080847	1	13576	13576		118.07	64.236	1	18145000			3578	1931	1789	1811	3512	3512		37			-0.0334562687394282
AMDVYKNLY	9	Oxidation (M)	_AM(Oxidation (M))DVYKNLY_		AM(1)DVYKNLY		AM(93)DVYKNLY	0	0	1		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S2	2	566.569091796875	2	566.7708	1131.52705	0.57689	0.00032696	-0.45184	-0.00025609	0.12505	7.0874E-05	566.7704017365668	36.446	0.25962	36.318	36.174	36.434	-0.12799					7	4	2	0	0	0	0.02327	1	13620	13620		93.166	49.393	1	11735000			3579	1931	1789	1811	3513	3513		37			-0.0334562687394282
AMDVYKNLY	9	Unmodified	_AMDVYKNLY_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S1	1	558.7736206054688	2	558.773342	1115.53213	0.19901	0.0001112	0.50506	0.00028222	0.70408	0.00039342	558.7734688698857	42.303	0.31189	42.303	42.123	42.435	0					13	5	4	0	0	0	0.0052024	1	15953	15953		163.04	84.308	1	83765000			3580	1931	1789	1812	3514	3514					-0.021013230113112513
AMDVYKNLY	9	Unmodified	_AMDVYKNLY_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S2	2	558.7735595703125	2	558.773342	1115.53213	0.32406	0.00018108	0.11224	6.2719E-05	0.43631	0.0002438	558.7734483129208	42.263	0.41385	42.195	41.913	42.327	-0.068199					17	7	4	0	0	0	0.0095327	1	15994	15994		137.42	89.078	1	103400000			3581	1931	1789	1812	3515	3515					-0.021013230113112513
AMDVYKNLY	9	Unmodified	_AMDVYKNLY_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S3	3	558.7738037109375	2	558.773342	1115.53213	0.46429	0.00025943	-0.52901	-0.0002956	-0.064729	-3.6169E-05	558.7730130247903	42.566	0.31301	42.262	42.092	42.405	-0.30352					7	5	2	0	0	0	0.053079	1	15869	15869		89.401	60.914	1	5344600			3582	1931	1789	1812	3516	3516					-0.021013230113112513
AMEGSMGTAP	10	Unmodified	_AMEGSMGTAP_					0	0	0			REV__ENST00000538033.2_1_2:114351940-114352102:+|nuORF	REV__ENST00000538033.2_1_2:114351940-114352102:+|nuORF	MSMS	HCT116MG_D190212_S4	4	476.1982116699219	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.207	1	22.959	22.459	23.459	-0.24775								0	0	0	0.86471	1	8113	8113		20.454	4.6064	1		+		3583	16354	1790	1813	3517	3517					-0.09342377256677992
AMFERIVKA	9	Unmodified	_AMFERIVKA_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MSMS	HCT116MG_D190212_S1	1	532.80029296875	2	532.799694	1063.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.765	1	36.765	36.265	37.265	0								0	0	0	0.074874	1	13714	13714		63.227	27.1	1				3584	2413	1791	1814	3518	3518					0.05558679842170022
AMIELVERL	9	Unmodified	_AMIELVERL_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MSMS	HCT116MG_D190212_S2	2	537.30517578125	2	537.30481	1072.59507	0.4579	0.00024603	0.26453	0.00014213	0.72242	0.00038816	537.3048984277399	55.03	0.30505	54.842	54.714	55.019	-0.18797					6	5	2	0	0	0	0.45684	1	21223	21223		19.362	5.4559	1	159830000			3585	4840	1792	1815	3519	3519					0.061672427767234694
AMISAHYGL	9	Unmodified	_AMISAHYGL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	482.26708984375	2	481.741845	961.469137	0.23284	0.00011217	0.17142	8.2582E-05	0.40426	0.00019475	481.74188924487856	41.955	0.20808	41.887	41.756	41.964	-0.068199					5	3	2	0	0	0	0.22203	1	15841	15841		24.674	7.7316	1	6742400			3586	9417	1793	1816	3520	3520					-0.013138440086891023
AMKILKKE	8	Unmodified	_AMKILKKE_					0	0	0		ENST00000556836.1_1_14:105241211-105241541:-|nuORF;ENST00000557552.1_1_14:105241211-105241541:-|nuORF;AKT3|p.P345Ffs*10|1|0.04|ENSG00000117020|chr1:243552859-243552860|-/ATCCAAA|frameshift_variant;nc|ENSG00000142208|P31749-2|AKT1;nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3;ENSG00000142208|ENST00000649815|AKT1	ENST00000556836.1_1_14:105241211-105241541:-|nuORF	ENST00000556836.1_1_14:105241211-105241541:-|nuORF	MSMS	HCT116MG_D190212_S4	4	480.80133056640625	2	480.799163	959.583773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.004	1	53.675	53.175	54.175	-0.32923								0	0	0	0.8837	1	20180	20180		2.3027	0	1				3587	90	1794	1817	3521	3521					0.10236465473246881
AMLPYDQYL	9	Unmodified	_AMLPYDQYL_					0	0	0		ENST00000586392.1_1_19:34884680-34890938:+|nuORF;GPI|p.E382Sfs*20|1|0.52|ENSG00000105220|chr19:34396377-34396377|G/-|frameshift_variant;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI	ENST00000586392.1_1_19:34884680-34890938:+|nuORF	ENST00000586392.1_1_19:34884680-34890938:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.0115966796875	2	557.267893	1112.52123	0.3792	0.00021131	0.0075088	4.1844E-06	0.3867	0.0002155	557.2678279213416	55.487	0.15375	55.301	55.174	55.327	-0.18565					4	2	2	0	0	0	0.11928	1	21376	21376		34.402	15.145	1	14345000		+	3588	578	1795	1818	3522	3522					-0.03052725385600752
AMLTGVLLA	9	Unmodified	_AMLTGVLLA_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S2	2	888.5228271484375	1	888.522301	887.515025	0.95651	0.00084988	-0.12932	-0.00011491	0.82719	0.00073498	888.5220103143845	56.945	0.1566	56.766	56.687	56.844	-0.17904					6	2	3	0	0	0	0.058138	1	22004	22004		70.716	10.326	1	24120000			3589	9390	1796	1819	3523	3523					0.06676801173534841
AMLTGVLLA	9	Unmodified	_AMLTGVLLA_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	888.522301	887.515025	0.68313	0.00060697	-0.076227	-6.7729E-05	0.6069	0.00053924	888.5224959057443	56.815	0.15545	56.815	56.686	56.841	0	0.024876	3.1175E-05	NaN	70.716	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9708300			3590	9390	1796	1819							0.06676801173534841
AMNARPHKV	9	Unmodified	_AMNARPHKV_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;chr12:54281941-54282052|473|46.5|0.0|22.15|+|ENST00000676842|HNRNPA1,HNRNPA1;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000484852.1_1_3:147884522-147885023:-|nuORF;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;chr12:54281945-54282090|465|21.34|0.0|21.03|+|ENST00000550994|HNRNPA1,HNRNPA1;chr12:54281908-54283827|478|50.47|0.0|22.27|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281896-54283827|481|161.31|0.0|23.94|+|ENST00000679273|HNRNPA1,HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2794799804688	2	512.27946	1022.54437	0.37929	0.0001943	0.16526	8.466E-05	0.54456	0.00027897	512.2793715865257	15.874	0.20823	15.874	15.744	15.952	0					5	3	2	0	0	0	0.012496	1	5309	5309		107.19	67.23	1	10314000			3591	441	1797	1820	3524	3524					0.0339975824240355
AMNARPHKV	9	Unmodified	_AMNARPHKV_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;chr12:54281941-54282052|473|46.5|0.0|22.15|+|ENST00000676842|HNRNPA1,HNRNPA1;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000484852.1_1_3:147884522-147885023:-|nuORF;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;chr12:54281945-54282090|465|21.34|0.0|21.03|+|ENST00000550994|HNRNPA1,HNRNPA1;chr12:54281908-54283827|478|50.47|0.0|22.27|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281896-54283827|481|161.31|0.0|23.94|+|ENST00000679273|HNRNPA1,HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2796020507812	2	512.27946	1022.54437	0.20815	0.00010663	0.060621	3.1055E-05	0.26877	0.00013768	512.2794457660681	16.363	0.36495	16.022	15.891	16.256	-0.34183					16	6	4	0	0	0	0.0034906	1	5503	5503		158.2	118.25	1	64096000			3592	441	1797	1820	3525	3525					0.0339975824240355
AMNARPHKV	9	Unmodified	_AMNARPHKV_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;chr12:54281941-54282052|473|46.5|0.0|22.15|+|ENST00000676842|HNRNPA1,HNRNPA1;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000484852.1_1_3:147884522-147885023:-|nuORF;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;chr12:54281945-54282090|465|21.34|0.0|21.03|+|ENST00000550994|HNRNPA1,HNRNPA1;chr12:54281908-54283827|478|50.47|0.0|22.27|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281896-54283827|481|161.31|0.0|23.94|+|ENST00000679273|HNRNPA1,HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MSMS	HCT116MG_D190212_S2	2	512.2802124023438	2	512.27946	1022.54437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.807	1	11.518	11.018	12.018	-0.28953								0	0	0	0.56943	1	3827	3827		25.399	11.493	1				3593	441	1797	1820	3526	3526					0.0339975824240355
AMNGHVPAV	9	Unmodified	_AMNGHVPAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	HCT116MG_D190212_S2	2	448.2262268066406	2	448.226362	894.438172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.313	1	31.063	30.563	31.563	-0.25041								0	0	0	0.15181	1	11547	11547		50.855	31.416	1				3594	3147	1798	1821	3527	3527					-0.013269973229398602
AMPPPPPQGV	10	Unmodified	_AMPPPPPQGV_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;ENST00000523986.5_1_8:117864120-117864294:-|nuORF	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MSMS	HCT116MG_D190212_S2	2	495.758544921875	2	495.757495	989.500437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.19	1	31.959	31.459	32.459	-0.23009								0	0	0	0.90023	1	11902	11902		15.847	0.078963	1				3595	4719	1799	1822	3528	3528					0.005267290253982537
AMRLRRLALFP	11	Unmodified	_AMRLRRLALFP_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	448.6084899902344	3	448.607936	1342.80198	0.22903	0.00010275	0.56687	0.0002543	0.79591	0.00035705	448.6081445390729	53.213	1.3068	52.91	52.146	53.453	-0.30305					42	24	2	0	0	0	0.74191	1	20050	20050		0.50596	0.50596	1	3172900			3596	8140	1800	1823	3529	3529					0.14429075115549495
AMRLRRLALFP	11	Unmodified	_AMRLRRLALFP_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	448.607936	1342.80198	0.1821	8.1691E-05	0.97216	0.00043612	1.1543	0.00051781	448.6082914255271	53.187	0.71965	53.187	52.794	53.514	0	0.17216	0.00033491	NaN	0.50596	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103740000			3597	8140	1800	1823							0.14429075115549495
AMRLRRLALFP	11	Unmodified	_AMRLRRLALFP_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	448.607936	1342.80198	0.34759	0.00015593	0.68628	0.00030787	1.0339	0.0004638	448.60812918602716	53.282	2.0308	52.947	52.15	54.181	-0.33473	-0.067267	-4.9841E-05	NaN	0.50596	98	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12324000			3598	8140	1800	1823							0.14429075115549495
AMSNLVPPVEL	11	Unmodified	_AMSNLVPPVEL_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENSG00000087460|ENST00000371085|GNAS;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	HCT116MG_D190212_S2	2	585.3154907226562	2	585.315374	1168.6162	0.6171	0.0003612	-0.32161	-0.00018825	0.29548	0.00017295	585.3151143685302	56.004	0.20411	55.818	55.691	55.895	-0.18565					8	3	3	0	0	0	0.6229	1	21616	21616		32.898	5.269	1	19732000			3599	9394	1801	1824	3530	3530					0.038632080856132234
AMTKDNNLL	9	Unmodified	_AMTKDNNLL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;HSPA2|p.G460C|1|0.37|ENSG00000126803|chr14:64542227-64542227|G/T|missense_variant;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000109971|ENST00000534624|HSPA8	MSMS	HCT116MG_D190212_S2	2	510.26318359375	2	510.263142	1018.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.543	1	35.4	34.9	35.9	-0.14245								0	0	0	0.007493	1	13262	13262		110.67	50.285	1				3600	2228;6330	1802	1825	3531	3531					0.0032150632887351094
AMWEHPITA	9	Unmodified	_AMWEHPITA_					0	0	0		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-MSMS	HCT116MG_D190212_S2	2	528.253173828125	2	528.252577	1054.4906	0.54316	0.00028693	0.097928	5.1731E-05	0.64109	0.00033866	528.2525049969698	40.872	0.31078	40.803	40.622	40.933	-0.069626					11	5	3	0	0	0	0.012168	1	15444	15444		108	60.248	1	36492000			3601	3571	1803	1826	3532	3532					-0.03446458979988165
AMWEHPITA	9	Unmodified	_AMWEHPITA_					0	0	0		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-MSMS	HCT116MG_D190212_S3	3	528.2529296875	2	528.252577	1054.4906	0.50765	0.00026817	0.18329	9.6822E-05	0.69094	0.00036499	528.2525592777654	41.111	0.26159	40.809	40.684	40.945	-0.30185					9	4	3	0	0	0	0.0060607	1	15288	15288		128.37	88.416	1	13128000			3602	3571	1803	1826	3533	3533					-0.03446458979988165
AMWEHPITA	9	Unmodified	_AMWEHPITA_					0	0	0		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-MSMS	HCT116MG_D190212_S4	4	528.2523803710938	2	528.252577	1054.4906	0.45979	0.00024289	0.15333	8.0997E-05	0.61312	0.00032388	528.2521737261144	41.251	0.14014	40.873	40.756	40.896	-0.37732					4	2	2	0	0	0	0.1754	2	15171	15158;15171		43.858	20.665	1	4030500			3603	3571	1803	1826	3534;3535	3535					-0.03446458979988165
AMWSKDSYL	9	Unmodified	_AMWSKDSYL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	HCT116MG_D190212_S2	2	550.269287109375	2	550.757692	1099.50083	0.33944	0.00018695	0.51393	0.00028305	0.85337	0.00047	550.7578459065105	45.455	0.20641	45.363	45.256	45.462	-0.092472					5	3	2	0	0	0	0.15759	1	17305	17305		47.749	13.347	1	6524000			3604	3846	1804	1827	3536	3536					-0.04493896045414658
AMYPDQVQL	9	Unmodified	_AMYPDQVQL_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	HCT116MG_D190212_S1	1	1064.2711181640625	1	1064.50811	1063.50083	0.71619	0.00076239	1.2554	0.0013364	1.9716	0.0020988	1064.509442108291	47.352	0.27502	47.352	47.217	47.492	0					7	5	2	0	0	0	0.0066233	1	17996	17996		123.45	63.377	1	9549700			3605	3330	1805	1828	3537	3537					-0.028378960453892432
AMYPDQVQL	9	Unmodified	_AMYPDQVQL_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7579956054688	2	532.757692	1063.50083	0.69264	0.00036901	-0.29851	-0.00015903	0.39413	0.00020998	532.7575937311177	47.504	0.41365	47.382	47.233	47.647	-0.12175					12	7	3	0	0	0	0.061422	1	18139	18139		69.105	32.599	1	18694000			3606	3330	1805	1828	3538	3538					-0.028378960453892432
AMYPDQVQL	9	Unmodified	_AMYPDQVQL_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	HCT116MG_D190212_S2	2	1064.509521484375	1	1064.50811	1063.50083	0.78947	0.00084039	0.043067	4.5846E-05	0.83253	0.00088624	1064.5082949526038	47.535	0.30988	47.413	47.233	47.543	-0.12175					9	5	2	0	0	0	0.01389	1	18143	18143		103.75	51.48	1	29810000			3607	3330	1805	1828	3539	3539					-0.028378960453892432
ANASKWSP	8	Unmodified	_ANASKWSP_					0	0	0		ENST00000560078.1_1_15:41101513-41102320:+|nuORF;ENST00000439365.6_2_19:47543749-47548643:+|nuORF;nc|ENSG00000166140|Q96K21-3|ZFYVE19;nc|ENSG00000166140|Q96K21-2|ZFYVE19;ENSG00000166140|ENST00000355341|ZFYVE19	ENST00000560078.1_1_15:41101513-41102320:+|nuORF	ENST00000560078.1_1_15:41101513-41102320:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	431.2082824707031	2	430.716685	859.418816	0.054328	2.34E-05	-0.22817	-9.8275E-05	-0.17384	-7.4875E-05	430.7165950274696	40.924	0.46551	40.855	40.622	41.088	-0.069626					13	8	2	0	0	0	0.63727	2	15443	15443;15485		29.082	2.2827	1	12745000			3608	4822	1806	1829	3540;3541	3540					-0.016516303421894918
ANDEDCMCSCC	11	Unmodified	_ANDEDCMCSCC_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MSMS	HCT116MG_D190212_S2	2	597.1563110351562	2	597.155444	1192.29634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.51	1	14.19	13.69	14.69	-0.31952								0	0	0	0.96208	1	4755	4755		0	0	1		+		3609	13393	1807	1830	3542	3542					-0.292120305763774
ANDEDCMCSCC	11	Unmodified	_ANDEDCMCSCC_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MSMS	HCT116MG_D190212_S2	2	596.7128295898438	2	597.155444	1192.29634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.723	1	14.404	13.904	14.904	-0.31952								0	0	0	0.96149	1	4841	4841		0.30703	0.30703	1		+		3610	13393	1807	1830	3543	3543					-0.292120305763774
ANDEDCMCSCC	11	Unmodified	_ANDEDCMCSCC_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MSMS	HCT116MG_D190212_S3	3	597.1566772460938	2	597.155444	1192.29634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.523	1	14.602	14.102	15.102	0.079683								0	0	0	0.96208	1	4681	4681		0	0	1		+		3611	13393	1807	1830	3544	3544					-0.292120305763774
ANDEDCMCSCC	11	Unmodified	_ANDEDCMCSCC_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MSMS	HCT116MG_D190212_S4	4	597.1568603515625	2	597.155444	1192.29634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.476	1	14.315	13.815	14.815	-0.16089								0	0	0	0.96208	1	4588	4588		0	0	1		+		3612	13393	1807	1830	3545	3545					-0.292120305763774
ANDEDCMCSCC	11	Unmodified	_ANDEDCMCSCC_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MSMS	HCT116MG_D190212_S4	4	597.1564331054688	2	597.155444	1192.29634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.72	1	14.559	14.059	15.059	-0.16089								0	0	0	0.96208	1	4687	4687		0	0	1		+		3613	13393	1807	1830	3546	3546					-0.292120305763774
ANGGLALA	8	Unmodified	_ANGGLALA_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5;SLC1A5|p.S177Qfs*33|1|0.37|ENSG00000105281|chr19:46787437-46787438|-/G|frameshift_variant	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-MSMS	HCT116MG_D190212_S4	4	686.3837280273438	1	686.383165	685.375889	0.68983	0.00047349	-0.31733	-0.00021781	0.3725	0.00025568	686.3828751669179	28.109	0.26003	27.778	27.648	27.908	-0.33138					6	4	2	0	0	0	0.46267	1	10120	10120		44.407	0	1	2808300			3614	1998	1808	1831	3547	3547					0.02061599600358477
ANGGNTAVAP	10	Unmodified	_ANGGNTAVAP_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	436.2171630859375	2	436.217049	870.419545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.567	1	18.643	18.143	19.143	0.076334								0	0	0	0.88261	1	6314	6314		18.146	1.2041	1		+		3615	17561	1809	1832	3548	3548					-0.020848356931537637
ANHHSFQMYT	10	Unmodified	_ANHHSFQMYT_					0	0	0		nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2	nc|ENSG00000160293|P52735-3|VAV2	nc|ENSG00000160293|P52735-3|VAV2	MSMS	HCT116MG_D190212_S2	2	618.2670288085938	2	618.266747	1234.51894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.686	1	10.412	9.912	10.912	-0.27365								0	0	0	0.96377	1	3396	3396		1.6526	0	1				3616	4442	1810	1833	3549	3549					-0.08893761070703476
ANLESAGAGL	10	Unmodified	_ANLESAGAGL_					0	0	0			REV__ENSG00000177508|ENST00000329734|IRX3	REV__ENSG00000177508|ENST00000329734|IRX3	MULTI-MSMS	HCT116MG_D190212_S1	1	902.302490234375	1	902.457787	901.45051	0.77437	0.00069883	-0.021256	-1.9183E-05	0.75311	0.00067965	902.4573510023265	34.259	0.15638	34.259	34.181	34.337	0					4	2	2	0	0	0	0.025359	1	12725	12725		110.67	3.5751	1	4448400	+		3617	13575	1811	1834	3550	3550					-0.0041568237888895965
ANLGSKTSVSN	11	Unmodified	_ANLGSKTSVSN_					0	0	0		ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	HCT116MG_D190212_S1	1	539.281494140625	2	539.280377	1076.5462	0.6207	0.00033473	1.0556	0.00056927	1.6763	0.00090401	539.280791999063	17.854	0.20853	17.854	17.724	17.933	0					7	3	3	0	0	0	0.72004	1	6112	6112		14.405	3.5815	1	9518900			3618	3842	1812	1835	3551	3551					0.010990457413299737
ANLGSKTSVSN	11	Unmodified	_ANLGSKTSVSN_					0	0	0		ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	539.280377	1076.5462	0.045785	2.4691E-05	0.45615	0.00024599	0.50194	0.00027069	539.2806720576002	18.502	0.1567	18.139	18.061	18.217	-0.36325	0.14239	-0.00051595	NaN	14.405	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3345000			3619	3842	1812	1835							0.010990457413299737
ANLPPQLIPY	10	Unmodified	_ANLPPQLIPY_					0	0	0		nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.T3266Rfs*18|1|0.31|ENSG00000140836|chr16:72788481-72788481|G/-|frameshift_variant;ZFHX3|p.A3407Lfs*78|2|0.3|ENSG00000140836|chr16:72788061-72788061|G/-|frameshift_variant;ZFHX3|p.H3611Tfs*83|1|0.4|ENSG00000140836|chr16:72787445-72787445|G/-|frameshift_variant;ENSG00000140836|ENST00000268489|ZFHX3	nc|ENSG00000140836|Q15911-2|ZFHX3	nc|ENSG00000140836|Q15911-2|ZFHX3	MSMS	HCT116MG_D190212_S1	1	563.3192138671875	2	563.318774	1124.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.843	1	41.843	41.343	42.343	0								0	0	0	0.90475	1	15766	15766		14.838	1.7958	1				3620	3687	1813	1836	3552	3552					0.06566889028476908
ANNTVSHVPA	10	Unmodified	_ANNTVSHVPA_					0	0	0		nc|ENSG00000056487|Q96EK2-4|PHF21B;nc|ENSG00000056487|Q96EK2-3|PHF21B;ENSG00000056487|ENST00000313237|PHF21B	nc|ENSG00000056487|Q96EK2-4|PHF21B	nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-MSMS	HCT116MG_D190212_S3	3	505.256591796875	2	505.256705	1008.49886	0.25157	0.00012711	0.52205	0.00026377	0.77362	0.00039088	505.2567070000271	20.082	0.41674	20.13	19.843	20.259	0.048107					16	7	3	0	0	0	0.67188	1	6933	6933		22.736	0.98964	1	11215000			3621	1087	1814	1837	3553	3553					-0.005051887389981857
ANQSSENQYE	10	Unmodified	_ANQSSENQYE_					0	0	0			REV__ACP2|p.R181Q|1|0.4|ENSG00000134575|chr11:47245481-47245481|C/T|missense_variant	REV__ACP2|p.R181Q|1|0.4|ENSG00000134575|chr11:47245481-47245481|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	585.2381591796875	2	585.238906	1168.46326	0.51794	0.00030312	-1.221	-0.00071457	-0.70305	-0.00041145	585.2380722761059	19.378	0.62434	19.008	18.68	19.304	-0.3695					19	11	2	0	0	0	0.40349	1	6658	6658		41.956	11.319	1	24333000	+		3622	9836	1815	1838	3554	3554					-0.11423315777324206
ANQSSENQYE	10	Unmodified	_ANQSSENQYE_					0	0	0			REV__ACP2|p.R181Q|1|0.4|ENSG00000134575|chr11:47245481-47245481|C/T|missense_variant	REV__ACP2|p.R181Q|1|0.4|ENSG00000134575|chr11:47245481-47245481|C/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	585.238906	1168.46326	0.45973	0.00026905	-1.2316	-0.00072081	-0.77191	-0.00045175	585.2377183940185	19.053	0.15632	19.053	18.975	19.131	0	0.022391	-1.1444E-05	NaN	41.956	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1802500	+		3623	9836	1815	1838							-0.11423315777324206
ANRTVVAR	8	Unmodified	_ANRTVVAR_					0	0	0		ENST00000233616.8_1_2:74692396-74692498:-|nuORF;ENST00000452063.6_1_2:74692055-74692498:-|nuORF;ENST00000462443.1_1_2:74690388-74692498:-|nuORF	ENST00000233616.8_1_2:74692396-74692498:-|nuORF	ENST00000233616.8_1_2:74692396-74692498:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	443.7647705078125	2	443.764501	885.514448	-0.061267	-2.7188E-05	-0.069384	-3.079E-05	-0.13065	-5.7979E-05	443.76438059985605	44.223	0.94445	44.223	43.884	44.829	0					26	17	2	0	0	0	0.83066	1	16738	16738		7.9102	0	1	20075000			3624	6772	1816	1839	3555	3555					0.0671114256869032
ANRTVVAR	8	Unmodified	_ANRTVVAR_					0	0	0		ENST00000233616.8_1_2:74692396-74692498:-|nuORF;ENST00000452063.6_1_2:74692055-74692498:-|nuORF;ENST00000462443.1_1_2:74690388-74692498:-|nuORF	ENST00000233616.8_1_2:74692396-74692498:-|nuORF	ENST00000233616.8_1_2:74692396-74692498:-|nuORF	MSMS	HCT116MG_D190212_S4	4	443.7645568847656	2	443.764501	885.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.005	1	41.629	41.129	42.129	-0.37637								0	0	0	0.8837	1	15422	15422		13.508	0	1				3625	6772	1816	1839	3556	3556					0.0671114256869032
ANRTVVAR	8	Unmodified	_ANRTVVAR_					0	0	0		ENST00000233616.8_1_2:74692396-74692498:-|nuORF;ENST00000452063.6_1_2:74692055-74692498:-|nuORF;ENST00000462443.1_1_2:74690388-74692498:-|nuORF	ENST00000233616.8_1_2:74692396-74692498:-|nuORF	ENST00000233616.8_1_2:74692396-74692498:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	443.764501	885.514448	-0.061267	-2.7188E-05	-0.069384	-3.079E-05	-0.13065	-5.7979E-05	443.76438059985605	44.223	0.94445	44.223	43.884	44.829	0	0	0	NaN	7.9102	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20075000			3626	6772	1816	1839							0.0671114256869032
ANTRIENFSAP	11	Unmodified	_ANTRIENFSAP_					0	0	0		DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant	DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant	DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	610.306884765625	2	610.306926	1218.5993	0.34556	0.00021089	-0.36431	-0.00022234	-0.018751	-1.1444E-05	610.3068354231817	16.594	0.93643	16.679	16.341	17.278	0.085424					24	17	2	0	0	0	0.73981	1	5453	5453		7.1017	0	1	2149300			3627	677	1817	1840	3557	3557					-0.0012557647601170174
ANTRIENFSAP	11	Unmodified	_ANTRIENFSAP_					0	0	0		DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;DIP2B|p.V893Gfs*91|1|0.06|ENSG00000066084|chr12:50714417-50714418|-/G|frameshift_variant;DIP2B|p.I979Afs*17|1|0.13|ENSG00000066084|chr12:50718790-50718815|AAATAGAAGAGAATGATTTGGTGAGG/-|frameshift_variant;DIP2B|p.A1021Cfs*11|1|0.32|ENSG00000066084|chr12:50721279-50721280|-/CTGTATGCAC|frameshift_variant	DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant	DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	610.306926	1218.5993	0.37614	0.00022956	0.069304	4.2297E-05	0.44545	0.00027186	610.3069991601317	16.782	0.95602	16.616	16.221	17.177	-0.16664	-0.031681	0.00013436	NaN	7.1017	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	938540			3628	677	1817	1840							-0.0012557647601170174
ANVGWNNSTFA	11	Unmodified	_ANVGWNNSTFA_					0	0	0		ENST00000498385.1_1_22:24236898-24237290:+|nuORF;ENSG00000240972|ENST00000215754|MIF;ENST00000465752.1_1_22:24237017-24237290:+|nuORF	ENST00000498385.1_1_22:24236898-24237290:+|nuORF	ENST00000498385.1_1_22:24236898-24237290:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	590.7738647460938	2	590.772719	1179.53089	0.58612	0.00034626	0.2858	0.00016884	0.87192	0.00051511	590.7729207355188	44.984	0.20663	44.984	44.88	45.087	0					6	3	2	0	0	0	0.081483	1	17048	17048		92.653	76.504	1	16231000			3629	6541	1818	1841	3558	3558					-0.05169821055869761
ANWFRRDGY	9	Unmodified	_ANWFRRDGY_					0	0	0			REV__CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant	REV__CNTNAP5|p.F1002Lfs*17|1|0.29|ENSG00000155052|chr2:124798108-124798108|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	395.1980285644531	3	395.524707	1183.55229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.502	1	26.14	25.64	26.64	-0.36164								0	0	0	0.76592	1	9591	9591		15.248	1.0303	1		+		3630	10218	1819	1842	3559	3559					-0.03214391236497249
APAAAAVEK	9	Unmodified	_APAAAAVEK_					0	0	0			REV__ENST00000463899.5_1_1:182781291-182795122:+|nuORF	REV__ENST00000463899.5_1_1:182781291-182795122:+|nuORF	MSMS	HCT116MG_D190212_S4	4	414.2597351074219	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.348	1	20.147	19.647	20.647	-0.20133								0	0	0	0.76641	1	6960	6960		13.508	0	1		+		3631	12108	1820	1843	3560	3560					0.03469826834657397
APAAALLVLL	10	Unmodified	_APAAALLVLL_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S2	2	951.6226806640625	1	951.62373	950.616454	0.51861	0.00049352	-1.5621	-0.0014865	-1.0435	-0.000993	951.6223252671139	15.012	0.20845	14.685	14.55	14.758	-0.32684					6	3	2	0	0	0	0.79392	1	4972	4972		12.532	2.3482	1	706920	+		3632	13219	1821	1844	3561	3561					0.13916995867759852
APAAATAAPAP	11	Unmodified	_APAAATAAPAP_					0	0	0		ENSG00000198648|ENST00000355999|STK39;STK39|p.K98Nfs*10|1|0.26|ENSG00000198648|chr2:168182005-168182005|T/-|frameshift_variant;STK39|p.K305Sfs*28|1|0.4|ENSG00000198648|chr2:168138148-168138148|T/-|frameshift_variant	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-MSMS	HCT116MG_D190212_S1	1	454.7450866699219	2	454.745442	907.476331	0.18679	8.4941E-05	0.12231	5.5619E-05	0.3091	0.00014056	454.7452342176895	18.011	0.31288	18.011	17.828	18.141	0					10	5	3	0	0	0	0.14645	1	6170	6170		81.613	8.6451	1	4107700			3633	6249	1822	1845	3562	3562					0.01889211863363016
APAACCWRSW	10	Unmodified	_APAACCWRSW_					0	0	0			REV__ENST00000367577.6_2_1:181057943-181058183:+|nuORF	REV__ENST00000367577.6_2_1:181057943-181058183:+|nuORF	MSMS	HCT116MG_D190212_S3	3	575.4893188476562	2	575.749679	1149.4848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.797	1	50.483	49.983	50.983	-0.31381								0	0	0	0.93576	1	19164	19164		7.9102	0.62092	1		+		3634	15126	1823	1846	3563	3563					-0.08395880763305286
APAAGKRLGRP	11	Unmodified	_APAAGKRLGRP_					0	0	0			REV__ENST00000536219.5_1_12:64173626-64178865:+|nuORF	REV__ENST00000536219.5_1_12:64173626-64178865:+|nuORF	MSMS	HCT116MG_D190212_S3	3	547.3323364257812	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.487	1	51.175	50.675	51.675	-0.31166								0	0	0	0.94924	1	19441	19441		6.7232	2.3939	1		+		3635	11640	1824	1847	3564	3564					0.10899051448268438
APAAGKRLGRP	11	Unmodified	_APAAGKRLGRP_					0	0	0			REV__ENST00000536219.5_1_12:64173626-64178865:+|nuORF	REV__ENST00000536219.5_1_12:64173626-64178865:+|nuORF	MSMS	HCT116MG_D190212_S3	3	547.3323364257812	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.521	1	52.214	51.714	52.714	-0.30639								0	0	0	0.94924	1	19857	19857		6.7232	2.7788	1		+		3636	11640	1824	1847	3565	3565					0.10899051448268438
APAAGKRLGRP	11	Unmodified	_APAAGKRLGRP_					0	0	0			REV__ENST00000536219.5_1_12:64173626-64178865:+|nuORF	REV__ENST00000536219.5_1_12:64173626-64178865:+|nuORF	MSMS	HCT116MG_D190212_S4	4	547.3329467773438	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.027	1	50.672	50.172	51.172	-0.35483								0	0	0	0.94924	1	18978	18978		6.7232	2.7788	1		+		3637	11640	1824	1847	3566	3566					0.10899051448268438
APAAHFALLV	10	Unmodified	_APAAHFALLV_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6	REV__nc|ENSG00000174233|O43306-2|ADCY6	MSMS	HCT116MG_D190212_S2	2	505.451171875	2	505.295102	1008.57565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.644	1	49.481	48.981	49.981	-0.16369								0	0	0	0.93576	1	19006	19006		7.9102	2.6795	1		+		3638	13473	1825	1848	3567	3567					0.0717065454813337
APAAHFQGFKN	11	Unmodified	_APAAHFQGFKN_					0	0	0		INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant	INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	594.33740234375	2	594.301447	1186.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.647	1	52.341	51.841	52.841	-0.30639								0	0	0	0.94284	1	19907	19907		10.074	3.3508	1				3639	2207	1826	1849	3568	3568					0.002510659403696991
APAALFGEAAP	11	Unmodified	_APAALFGEAAP_					0	0	0		nc|ENSG00000147144|Q96HB5|CCDC120;nc|ENSG00000147144|Q96HB5-3|CCDC120;ENSG00000147144|ENST00000603986|CCDC120;CCDC120|p.A127Gfs*11|1|0.07|ENSG00000147144|chrX:49064422-49064423|-/G|frameshift_variant;CCDC120|p.E464Sfs*170|1|0.7|ENSG00000147144|chrX:49067604-49067604|G/-|frameshift_variant;CCDC120|p.Q26Rfs*2|1|0.31|ENSG00000147144|chrX:49062489-49062489|C/-|frameshift_variant;ENST00000482476.1_1_X:48919453-48920147:+|nuORF	nc|ENSG00000147144|Q96HB5|CCDC120	nc|ENSG00000147144|Q96HB5|CCDC120	MSMS	HCT116MG_D190212_S2	2	507.6336669921875	2	507.766374	1013.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.728	1	48.584	48.084	49.084	-0.1437								0	0	0	0.93181	1	18626	18626		15.847	0	1				3640	3975	1827	1850	3569	3569					0.011977675518892283
APAANAVKAG	10	Unmodified	_APAANAVKAG_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-SECPEP	HCT116MG_D190212_S1	1	435.2272033691406	2	435.245609	868.476666	0.25897	0.00011272	-1.2945	-0.00056341	-1.0355	-0.0004507	435.2449406563903	17.437	0.26104	17.437	17.255	17.516	0					6	4	2	0	0	0	0.26542	1	5918	5918		26.884	8.7487	1	1895900			3641	3240	1828	1851	3570	3570					0.037166315832337204
APAANPDDEME	11	Unmodified	_APAANPDDEME_					0	0	0		ENSG00000170684|ENST00000303809|ZNF296	ENSG00000170684|ENST00000303809|ZNF296	ENSG00000170684|ENST00000303809|ZNF296	MSMS	HCT116MG_D190212_S2	2	580.222900390625	2	580.232235	1158.44992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.248	1	48.106	47.606	48.606	-0.14276								0	0	0	0.94924	1	18428	18428		6.7232	2.3939	1				3642	5151	1829	1852	3571	3571					-0.12296889880940398
APAAPDLLMK	10	Unmodified	_APAAPDLLMK_					0	0	0			REV__CHRNG|p.C252Vfs*58|1|0.29|ENSG00000196811|chr2:232543026-232543026|C/-|frameshift_variant	REV__CHRNG|p.C252Vfs*58|1|0.29|ENSG00000196811|chr2:232543026-232543026|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	514.048828125	2	513.786253	1025.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.622	1	49.306	48.806	49.806	-0.31596								0	0	0	0.91906	1	18691	18691		11.64	1.5664	1		+		3643	10191	1830	1853	3572	3572					0.04619571230955444
APAAPGGWPNT	11	Unmodified	_APAAPGGWPNT_					0	0	0			REV__nc|ENSG00000072134|O95208-5|EPN2	REV__nc|ENSG00000072134|O95208-5|EPN2	MULTI-MSMS	HCT116MG_D190212_S3	3	519.8046875	2	519.753798	1037.49304	0.24715	0.00012845	-0.63292	-0.00032896	-0.38578	-0.00020051	519.7533457005138	51.038	0.31375	50.724	50.594	50.907	-0.31381					13	5	3	0	0	0	0.72139	1	19226	19226		13.906	1.3745	1	12572000	+		3644	10772	1831	1854	3573	3573					-0.024202872506748463
APAAPMVSKGA	11	Unmodified	_APAAPMVSKGA_					0	0	0		nc|ENSG00000169925|Q15059-2|BRD3;ENSG00000169925|ENST00000303407|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	nc|ENSG00000169925|Q15059-2|BRD3	MSMS	HCT116MG_D190212_S2	2	500.26995849609375	2	500.268227	998.521901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.045	1	17.688	17.188	18.188	-0.35647								0	0	0	0.93552	1	6178	6178		13.906	1.3745	1				3645	5103	1832	1855	3574	3574					0.02258114054120597
APAAPQDLCPD	11	Unmodified	_APAAPQDLCPD_					0	0	0		ENST00000415732.1_3_10:127584838-127584991:-|nuORF	ENST00000415732.1_3_10:127584838-127584991:-|nuORF	ENST00000415732.1_3_10:127584838-127584991:-|nuORF	MSMS	HCT116MG_D190212_S2	2	548.8822631835938	2	549.250231	1096.48591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.909	1	49.745	49.245	50.245	-0.16369								0	0	0	0.9414	1	19115	19115		10.824	0	1				3646	7753	1833	1856	3575	3575					-0.05847387913399871
APAAPRRPMGP	11	Unmodified	_APAAPRRPMGP_					0	0	0			REV__ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	REV__ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	560.8037109375	2	560.805842	1119.59713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.586	1	50.272	49.772	50.772	-0.31381								0	0	0	0.9414	1	19079	19079		10.824	2.6684	1		+		3647	18082	1834	1857	3576	3576					0.04211716305189839
APAAPSLPQ	9	Unmodified	_APAAPSLPQ_					0	0	0		ENSG00000069696|ENST00000176183|DRD4	ENSG00000069696|ENST00000176183|DRD4	ENSG00000069696|ENST00000176183|DRD4	MSMS	HCT116MG_D190212_S3	3	426.234375	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.108	1	22.108	21.608	22.608	0.00074577								0	0	0	0.76641	1	7739	7739		13.508	0	1				3648	1221	1835	1858	3577	3577					0.023658268346594014
APAAPTSCDF	10	Unmodified	_APAAPTSCDF_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	490.3255615234375	2	490.213117	978.411682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.944	1	47.811	47.311	48.311	-0.13281								0	0	0	0.89194	1	18302	18302		16.942	6.7589	1				3649	2499;9344	1836	1859	3578	3578					-0.07838731004926558
APAAQEPLHPQ	11	Unmodified	_APAAQEPLHPQ_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MSMS	HCT116MG_D190212_S1	1	579.7978515625	2	579.798737	1157.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.871	1	18.871	18.371	19.371	0								0	0	0	0.94145	1	6512	6512		10.8	1.4164	1		+		3650	13043	1837	1860	3579	3579					0.010433423579115697
APAARRTL	8	Unmodified	_APAARRTL_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	HCT116MG_D190212_S2	2	428.26165771484375	2	428.261594	854.508634	-0.059695	-2.5565E-05	0.1224	5.2419E-05	0.062705	2.6854E-05	428.2615551346063	49.211	0.8623	49.057	48.834	49.696	-0.15405					45	16	4	0	0	0	0.86388	1	19052	19052		2.8892	0	1	890680000			3651	4753	1838	1861	3580	3580					0.07556044057048439
APAARRTL	8	Unmodified	_APAARRTL_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MATCH	HCT116MG_D190212_S3	3		2	428.261594	854.508634	0.25664	0.00010991	0.55677	0.00023844	0.81341	0.00034835	428.2616095324358	49.075	0.21243	48.759	48.657	48.87	-0.31596	-0.14915	0.00036113	NaN	2.8892	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1101600			3652	4753	1838	1861							0.07556044057048439
APAARRTLT	9	Unmodified	_APAARRTLT_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	HCT116MG_D190212_S1	1	478.78515625	2	478.785433	955.556313	0.107	5.1229E-05	0.31982	0.00015313	0.42682	0.00020435	478.78551142131914	49.415	1.8583	49.415	48.819	50.678	0					67	35	5	0	0	0	0.64512	1	19260	19260		8.5933	1.304	1	4632200000			3653	4753	1839	1862	3581	3581					0.07675698257230579
APAARRTLT	9	Unmodified	_APAARRTLT_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	HCT116MG_D190212_S3	3	478.785400390625	2	478.785433	955.556313	0.14863	7.1161E-05	0.14808	7.0898E-05	0.29671	0.00014206	478.7854059543937	50.445	1.4623	50.131	49.76	51.222	-0.31435					63	27	4	0	0	0	0.7005	1	19180	19180		5.2307	0.47466	1	67247000			3654	4753	1839	1862	3582	3582					0.07675698257230579
APAARRTLT	9	Unmodified	_APAARRTLT_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	HCT116MG_D190212_S4	4	478.78570556640625	2	478.785433	955.556313	0.30479	0.00014593	0.012508	5.9885E-06	0.3173	0.00015192	478.785324897491	50.386	1.7285	50.027	49.517	51.246	-0.35878					84	33	5	0	0	0	0.7005	1	19023	19023		5.2307	0	1	195590000			3655	4753	1839	1862	3583	3583					0.07675698257230579
APAARRTLT	9	Unmodified	_APAARRTLT_					0	0	0		ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	ENSG00000165152|ENST00000374848|PGAP4	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	478.785433	955.556313	0.30479	0.00014593	0.012508	5.9885E-06	0.3173	0.00015192	478.785324897491	50.386	1.7285	50.027	49.517	51.246	-0.35878	-0.051977	-6.6397E-05	NaN	5.2307	84	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195590000			3656	4753	1839	1862							0.07675698257230579
APAARVPGPGP	11	Unmodified	_APAARVPGPGP_					0	0	0		ENSG00000197380|ENST00000391916|DACT3	ENSG00000197380|ENST00000391916|DACT3	ENSG00000197380|ENST00000391916|DACT3	MSMS	HCT116MG_D190212_S4	4	495.2804260253906	2	495.279983	988.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.535	1	54.212	53.712	54.712	-0.32349								0	0	0	0.94924	1	20394	20394		6.7232	1.4925	1				3657	6139	1840	1863	3584	3584					0.05068295882949769
APAAVYVTRVT	11	Unmodified	_APAAVYVTRVT_					0	0	0			REV__ENST00000547344.5_1_12:58159017-58160836:-|nuORF	REV__ENST00000547344.5_1_12:58159017-58160836:-|nuORF	MSMS	HCT116MG_D190212_S2	2	574.1360473632812	2	574.327131	1146.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.278	1	52.091	51.591	52.591	-0.18725								0	0	0	0.94284	1	20078	20078		10.074	2.1638	1		+		3658	10321	1841	1864	3585	3585					0.07225389914401603
APAAWLLLQEW	11	Unmodified	_APAAWLLLQEW_					0	0	0			REV__ENST00000467558.5_1_7:2578584-2579570:-|nuORF	REV__ENST00000467558.5_1_7:2578584-2579570:-|nuORF	MSMS	HCT116MG_D190212_S3	3	649.3497924804688	2	649.350606	1296.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.531	1	50.217	49.717	50.717	-0.31381								0	0	0	0.94924	1	19057	19057		6.7232	0	1		+		3659	15836	1842	1865	3586	3586					0.05018249465570079
APACPRPAQ	9	Carbamidomethyl (C)	_APAC(Carbamidomethyl (C))PRPAQ_	APAC(1)PRPAQ		APAC(42)PRPAQ		0	1	0		ENST00000349394.5_1_12:57610696-57618781:+|nuORF	ENST00000349394.5_1_12:57610696-57618781:+|nuORF	ENST00000349394.5_1_12:57610696-57618781:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.7435607910156	2	484.242544	966.470534	0.19232	9.313E-05	2.6767	0.0012962	2.869	0.0013893	484.24574277936114	17.057	0.46845	16.708	16.457	16.925	-0.34933					15	8	3	0	0	0	0.19218	1	5763	5763		42.095	15.211	1	8067800			3660	7273	1843	1866	3587	3587	44				-0.014042099199400582
APAECPCEFH	10	Unmodified	_APAECPCEFH_					0	0	0		OTOG|p.Q1138Rfs*24|1|0.12|ENSG00000188162|chr11:17594130-17594130|C/-|frameshift_variant;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG	OTOG|p.Q1138Rfs*24|1|0.12|ENSG00000188162|chr11:17594130-17594130|C/-|frameshift_variant	OTOG|p.Q1138Rfs*24|1|0.12|ENSG00000188162|chr11:17594130-17594130|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	552.3063354492188	2	552.217877	1102.4212	0.423	0.00023359	-0.58825	-0.00032484	-0.16525	-9.1256E-05	552.2176623178058	49.053	0.26057	49.053	48.922	49.183	0					6	4	2	0	0	0	0.31093	1	18656	18656		0	0	1	6790400			3661	5971	1844	1867	3588	3588					-0.12591285991038603
APAEGPAG	8	Unmodified	_APAEGPAG_					0	0	0			REV__MYBPC3|p.P453Lfs*13|1|0.26|ENSG00000134571|chr11:47342929-47342929|G/-|frameshift_variant	REV__MYBPC3|p.P453Lfs*13|1|0.26|ENSG00000134571|chr11:47342929-47342929|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	669.3209838867188	1	669.320231	668.312954	0.36073	0.00024144	0.38721	0.00025917	0.74794	0.00050061	669.3202189078936	17.382	0.57437	17.033	16.769	17.343	-0.34933					15	10	2	0	0	0	0.1757	1	5917	5917		78.445	0	1	4104500	+		3662	12061	1845	1868	3589	3589					-0.034469661876528335
APAEGPAG	8	Unmodified	_APAEGPAG_					0	0	0			REV__MYBPC3|p.P453Lfs*13|1|0.26|ENSG00000134571|chr11:47342929-47342929|G/-|frameshift_variant	REV__MYBPC3|p.P453Lfs*13|1|0.26|ENSG00000134571|chr11:47342929-47342929|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	669.320231	668.312954	0.36073	0.00024144	0.38721	0.00025917	0.74794	0.00050061	669.3202189078936	17.382	0.57437	17.033	16.769	17.343	-0.34933	0.034169	0.00014786	NaN	78.445	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4104500	+		3663	12061	1845	1868							-0.034469661876528335
APAEKLIVGFP	11	Unmodified	_APAEKLIVGFP_					0	0	0		nc|ENSG00000134216|Q9BZP6-3|CHIA;nc|ENSG00000134216|Q9BZP6-2|CHIA;CHIA|p.N312Mfs*68|1|0.24|ENSG00000134216|chr1:111319135-111319135|A/-|frameshift_variant;ENSG00000134216|ENST00000369740|CHIA	nc|ENSG00000134216|Q9BZP6-3|CHIA	nc|ENSG00000134216|Q9BZP6-3|CHIA	MSMS	HCT116MG_D190212_S1	1	571.3373413085938	2	571.334424	1140.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.346	1	33.346	32.846	33.846	0								0	0	0	0.95023	1	12337	12337		6.2058	0.47393	1				3664	436	1846	1869	3590	3590					0.08959462062580315
APAERKRVHNQ	11	Unmodified	_APAERKRVHNQ_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	MSMS	HCT116MG_D190212_S4	4	653.362060546875	2	653.360359	1304.70617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.78	1	18.599	18.099	19.099	-0.18052								0	0	0	0.94538	1	6326	6326		8.7454	3.0136	1		+		3665	11036	1847	1870	3591	3591					0.06600018529047702
APAERSETQGP	11	Unmodified	_APAERSETQGP_					0	0	0			REV__ENST00000534885.5_1_12:6450992-6451268:-|nuORF	REV__ENST00000534885.5_1_12:6450992-6451268:-|nuORF	MSMS	HCT116MG_D190212_S3	3	571.7755737304688	2	571.775459	1141.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.145	1	18.222	17.722	18.722	0.076334								0	0	0	0.94416	1	6144	6144		9.3831	0.63772	1		+		3666	16334	1848	1871	3592	3592					-0.028741422640450764
APAFLMLLLMG	11	Unmodified	_APAFLMLLLMG_					0	0	0		ENST00000359947.8_1_1:44087898-44088009:+|nuORF	ENST00000359947.8_1_1:44087898-44088009:+|nuORF	ENST00000359947.8_1_1:44087898-44088009:+|nuORF	MSMS	HCT116MG_D190212_S3	3	588.8313598632812	2	588.829606	1175.64466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.686	1	50.372	49.872	50.872	-0.31381								0	0	0	0.94924	1	19119	19119		6.7232	0	1				3667	7343	1849	1872	3593	3593					0.06386234461160711
APAGAPVA	8	Unmodified	_APAGAPVA_					0	0	0		ENST00000377834.8_1_1:6478873-6479209:-|nuORF	ENST00000377834.8_1_1:6478873-6479209:-|nuORF	ENST00000377834.8_1_1:6478873-6479209:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	653.3621215820312	1	653.361702	652.354425	0.47452	0.00031004	0.1138	7.4354E-05	0.58833	0.00038439	653.3615222968145	19.075	0.26068	18.706	18.575	18.836	-0.3695					7	4	2	0	0	0	0.49217	1	6625	6625		41.817	0	1	6456500			3668	7532	1850	1873	3594	3594					0.014342145716682353
APAGAPVA	8	Unmodified	_APAGAPVA_					0	0	0		ENST00000377834.8_1_1:6478873-6479209:-|nuORF	ENST00000377834.8_1_1:6478873-6479209:-|nuORF	ENST00000377834.8_1_1:6478873-6479209:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	653.3617553710938	1	653.361702	652.354425	0.64365	0.00042054	0.15097	9.864E-05	0.79463	0.00051918	653.3614397208861	18.571	0.31241	18.648	18.465	18.778	0.076334					9	5	2	0	0	0	0.49217	1	6321	6321		41.817	0	1	4231200			3669	7532	1850	1873	3595	3595					0.014342145716682353
APAGAVPA	8	Unmodified	_APAGAVPA_					0	0	0			REV__ENST00000461979.1_1_7:150775105-150777853:-|nuORF	REV__ENST00000461979.1_1_7:150775105-150777853:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	653.3618774414062	1	653.361702	652.354425	0.6252	0.00040848	0.21501	0.00014048	0.84021	0.00054896	653.3616876075724	18.751	0.2606	18.751	18.61	18.871	0					6	4	2	0	0	0	0.68942	1	6482	6482		24.21	0	1	4241300	+		3670	15790	1851	1874	3596	3596					0.014342145716682353
APAGPEPQWE	10	Unmodified	_APAGPEPQWE_					0	0	0			REV__DUSP7|p.G209Afs*131|1|0.4|ENSG00000164086|chr3:52054266-52054266|C/-|frameshift_variant	REV__DUSP7|p.G209Afs*131|1|0.4|ENSG00000164086|chr3:52054266-52054266|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	540.9463500976562	2	541.251089	1080.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.283	1	49.967	49.467	50.467	-0.31525								0	0	0	0.91906	1	18957	18957		11.64	4.3511	1		+		3671	10422	1852	1875	3597	3597					-0.04940010833138331
APAGPNHG	8	Unmodified	_APAGPNHG_					0	0	0			REV__ENST00000374012.7_1_20:34535545-34535614:+|nuORF	REV__ENST00000374012.7_1_20:34535545-34535614:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	720.3419189453125	1	720.342363	719.335087	1.0804	0.00077827	-1.5475	-0.0011147	-0.46711	-0.00033648	720.3408780349437	34.273	0.25949	34.097	33.916	34.175	-0.17512					7	4	2	0	0	0	0.81097	1	12743	12743		10.183	0.83596	1	24035000	+		3672	15200	1853	1876	3598	3598					-0.035807417192359026
APAHFHRNF	9	Unmodified	_APAHFHRNF_					0	0	0		nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1	nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|O94854|MACF1	MSMS	HCT116MG_D190212_S1	1	548.7776489257812	2	548.7754	1095.53625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.913	1	14.913	14.413	15.413	0								0	0	0	0.76781	1	4917	4917		8.5933	1.8701	1				3673	9450	1854	1877	3599	3599					-0.007700526827193244
APAIDMPRETN	11	Unmodified	_APAIDMPRETN_					0	0	0			REV__ENSG00000083290|ENST00000395544|ULK2	REV__ENSG00000083290|ENST00000395544|ULK2	MSMS	HCT116MG_D190212_S3	3	607.7846069335938	2	607.795337	1213.57612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.508	1	49.192	48.692	49.692	-0.31596								0	0	0	0.94924	1	18645	18645		6.7232	0	1		+		3674	10900	1855	1878	3600	3600					-0.022123385849681654
APAILMRKKLD	11	Unmodified	_APAILMRKKLD_					0	0	0			REV__ENST00000369983.3_1_10:104142211-104142316:+|nuORF	REV__ENST00000369983.3_1_10:104142211-104142316:+|nuORF	MSMS	HCT116MG_D190212_S3	3	628.411376953125	2	628.381383	1254.74821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.915	1	49.6	49.1	50.1	-0.31525								0	0	0	0.94924	1	18809	18809		6.7232	1.4263	1		+		3675	15153	1856	1879	3601	3601					0.131028578932046
APAKDRRCEC	10	Unmodified	_APAKDRRCEC_					0	0	0			REV__ENST00000511815.1_3_5:141703462-141703594:-|nuORF	REV__ENST00000511815.1_3_5:141703462-141703594:-|nuORF	MSMS	HCT116MG_D190212_S4	4	574.7685546875	2	574.7686	1147.52265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.273	1	49.914	49.414	50.414	-0.35878								0	0	0	0.93854	1	18673	18673		7.2892	0	1		+		3676	16186	1857	1880	3602	3602					-0.04521414568466753
APAKEMWPVQH	11	Unmodified	_APAKEMWPVQH_					0	0	0			REV__nc|ENSG00000030582|P28799-3|GRN	REV__nc|ENSG00000030582|P28799-3|GRN	MSMS	HCT116MG_D190212_S3	3	647.6644287109375	2	647.324065	1292.63358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.762	1	50.448	49.948	50.948	-0.31381								0	0	0	0.93717	1	19150	19150		13.042	6.8367	1		+		3677	10571	1858	1881	3603	3603					-0.0010345158873406035
APAKKDVKGS	10	Unmodified	_APAKKDVKGS_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant;ENST00000431908.5_1_6:31504422-31508408:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MSMS	HCT116MG_D190212_S2	2	500.79150390625	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.142	1	48.988	48.488	49.488	-0.15405								0	0	0	0.92272	1	18798	18798		10.824	1.4765	1				3678	6241	1859	1882	3604	3604					0.07149145334574314
APAKKKAKL	9	Unmodified	_APAKKKAKL_					0	0	0			REV__ENST00000448062.1_1_2:222909560-222909710:-|nuORF	REV__ENST00000448062.1_1_2:222909560-222909710:-|nuORF	MSMS	HCT116MG_D190212_S2	2	477.9172668457031	2	477.826569	953.638586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.267	1	48.123	47.623	48.623	-0.1437								0	0	0	0.76781	1	18435	18435		8.5933	1.304	1		+		3679	15692	1860	1883	3605	3605					0.15991220336172773
APAKKKMKL	9	Unmodified	_APAKKKMKL_					0	0	0		nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant;SIN3B|p.F776Lfs*21|1|0.31|ENSG00000127511|chr19:16869880-16869880|T/-|frameshift_variant;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.R289C|1|0.51|ENSG00000127511|chr19:16853084-16853084|C/T|missense_variant	nc|ENSG00000127511|O75182-3|SIN3B	nc|ENSG00000127511|O75182-3|SIN3B	MSMS	HCT116MG_D190212_S4	4	507.82958984375	2	507.828255	1013.64196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.62	1	50.265	49.765	50.765	-0.35483								0	0	0	0.74436	1	18813	18813		16.942	12.613	1				3680	2967	1861	1884	3606	3606					0.1356814711853076
APAKKPKPEP	10	Unmodified	_APAKKPKPEP_					0	0	0			REV__ENST00000261249.6_1_14:61438965-61439184:-|nuORF	REV__ENST00000261249.6_1_14:61438965-61439184:-|nuORF	MSMS	HCT116MG_D190212_S2	2	531.530517578125	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.105	1	48.951	48.451	49.451	-0.15405								0	0	0	0.90475	1	18783	18783		14.838	2.3067	1		+		3681	14154	1862	1885	3607	3607					0.09498308748334239
APALKGVH	8	Unmodified	_APALKGVH_					0	0	0		PRAMEF1|p.R140Kfs*23|1|0.27|ENSG00000116721|chr1:12794043-12794044|-/A|frameshift_variant	PRAMEF1|p.R140Kfs*23|1|0.27|ENSG00000116721|chr1:12794043-12794044|-/A|frameshift_variant	PRAMEF1|p.R140Kfs*23|1|0.27|ENSG00000116721|chr1:12794043-12794044|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	396.739990234375	2	396.739963	791.465373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.303	1	18.303	17.803	18.803	0								0	0	0	0.5031	1	6283	6283		42.968	20.515	1				3682	9774	1863	1886	3608	3608					0.06129854279754454
APALRLLNRKP	11	Unmodified	_APALRLLNRKP_					0	0	0		nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	MSMS	HCT116MG_D190212_S2	2	624.89599609375	2	624.898589	1247.78262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.658	1	49.495	48.995	49.995	-0.16369								0	0	0	0.95521	1	19012	19012		3.5965	0.31518	1				3683	9503	1864	1887	3609	3609					0.16864442096311905
APALSLNVSY	10	Unmodified	_APALSLNVSY_					0	0	0			REV__ENSG00000164438|ENST00000296921|TLX3	REV__ENSG00000164438|ENST00000296921|TLX3	MULTI-MSMS	HCT116MG_D190212_S3	3	519.2394409179688	2	517.779482	1033.54441	0.20915	0.00010829	0.21765	0.0001127	0.4268	0.00022099	517.7795074041956	54.094	0.31229	53.795	53.613	53.925	-0.29946					16	5	4	0	0	0	0.87641	1	20419	20419		4.3292	0	1	20493000	+		3684	13006	1865	1888	3610	3610					0.028980367233771176
APALYGRQP	9	Unmodified	_APALYGRQP_					0	0	0		nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	MSMS	HCT116MG_D190212_S1	1	486.7651672363281	2	486.766709	971.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.139	1	19.139	18.639	19.639	0								0	0	0	0.71969	1	6620	6620		18.135	5.6034	1				3685	9374	1866	1889	3611	3611					0.031966069916279594
APANEKALR	9	Unmodified	_APANEKALR_					0	0	0			REV__ENST00000596386.1_1_19:40477100-40485896:+|nuORF	REV__ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MSMS	HCT116MG_D190212_S4	4	484.82940673828125	2	485.277441	968.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.481	1	52.141	51.641	52.641	-0.34023								0	0	0	0.76781	1	19565	19565		8.5933	0	1		+		3686	10531	1867	1890	3612	3612					0.05479992020332247
APANKRHIR	9	Unmodified	_APANKRHIR_					0	0	0			REV__ENSG00000120907|ENST00000380573|ADRA1A	REV__ENSG00000120907|ENST00000380573|ADRA1A	MULTI-MSMS	HCT116MG_D190212_S1	1	1062.6275634765625	1	1062.62792	1061.62064	0.77262	0.00082101	-0.60212	-0.00063983	0.1705	0.00018118	1062.6270040370744	47.324	1.1028	47.324	46.492	47.595	0					38	21	2	0	0	0	0.74607	1	17726	17726		2.0598	0.21551	1	20559000	+		3687	11704	1868	1891	3613	3613					0.09229898134026371
APANKRHIR	9	Unmodified	_APANKRHIR_					0	0	0			REV__ENSG00000120907|ENST00000380573|ADRA1A	REV__ENSG00000120907|ENST00000380573|ADRA1A	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1062.62792	1061.62064	0.59407	0.00063128	-0.53835	-0.00057206	0.055728	5.9218E-05	1062.6268017912698	47.957	0.30846	47.588	47.418	47.726	-0.36907	0.13178	4.71E-05	NaN	2.0598	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2025600	+		3688	11704	1868	1891							0.09229898134026371
APAPAGRP	8	Unmodified	_APAPAGRP_					0	0	0		ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	MULTI-MSMS	HCT116MG_D190212_S4	4	368.7084655761719	2	368.708663	735.402772	0.017895	6.598E-06	-0.32657	-0.00012041	-0.30867	-0.00011381	368.7084882558895	20.359	0.51981	20.158	19.885	20.404	-0.20133					11	9	2	0	0	0	0.32897	1	6995	6995		56.541	0	1	2749200			3689	1374	1869	1892	3614	3614					0.024487082115570047
APAPAGRP	8	Unmodified	_APAPAGRP_					0	0	0		ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	368.708663	735.402772	-0.15189	-5.6005E-05	-0.34023	-0.00012545	-0.49213	-0.00018145	368.70843944718507	20.061	0.41662	20.11	19.895	20.311	0.048107	-0.024273	-7.4936E-06	NaN	56.541	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3490900			3690	1374	1869	1892							0.024487082115570047
APAPAKPGPHA	11	Unmodified	_APAPAKPGPHA_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-MSMS	HCT116MG_D190212_S1	1	507.49761962890625	2	507.279983	1012.54541	0.31523	0.00015991	-0.41453	-0.00021028	-0.0993	-5.0373E-05	507.2793416541554	49.479	0.20614	49.479	49.337	49.543	0					5	3	2	0	0	0	0.72974	2	18802	18802;18873		10.824	2.9138	1	12578000			3691	1692	1870	1893	3615;3616	3615					0.03964295882940405
APAPALVVRP	10	Unmodified	_APAPALVVRP_					0	0	0			REV__ENST00000305784.6_1_2:242626263-242626392:-|nuORF	REV__ENST00000305784.6_1_2:242626263-242626392:-|nuORF	MSMS	HCT116MG_D190212_S2	2	495.55322265625	2	495.808377	989.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.739	1	48.595	48.095	49.095	-0.1437								0	0	0	0.89194	1	18631	18631		16.942	8.349	1		+		3692	14807	1871	1894	3617	3617					0.10698343439457858
APAPAPAPLYP	11	Unmodified	_APAPAPAPLYP_					0	0	0			REV__ENST00000329759.5_1_3:194408947-194409145:+|nuORF	REV__ENST00000329759.5_1_3:194408947-194409145:+|nuORF	MSMS	HCT116MG_D190212_S2	2	532.7942504882812	2	532.792392	1063.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.825	1	50.651	50.151	51.151	-0.17408								0	0	0	0.9414	1	19486	19486		10.824	0	1		+		3693	14924	1872	1895	3618	3618					0.04098930965665204
APAPARPYQGV	11	Unmodified	_APAPARPYQGV_					0	0	0		ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	MSMS	HCT116MG_D190212_S3	3	563.746337890625	2	563.803823	1125.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.096	1	49.78	49.28	50.28	-0.31525								0	0	0	0.9414	1	18882	18882		10.824	2.9138	1				3694	2260	1873	1896	3619	3619					0.035319500831292316
APAPATTTGTR	11	Unmodified	_APAPATTTGTR_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MSMS	HCT116MG_D190212_S2	2	522.57373046875	2	522.277638	1042.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.569	1	48.426	47.926	48.926	-0.1437								0	0	0	0.9414	1	18560	18560		10.824	2.0785	1				3695	1651	1874	1897	3620	3620					0.021153669495106442
APAPEWFTF	9	Unmodified	_APAPEWFTF_					0	0	0		ENST00000488477.2_1_2:223916946-223925378:+|nuORF	ENST00000488477.2_1_2:223916946-223925378:+|nuORF	ENST00000488477.2_1_2:223916946-223925378:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.3219604492188	2	533.255643	1064.49673	0.6661	0.0003552	4.0082	0.0021374	4.6743	0.0024926	533.7585878332286	48.328	0.20275	48.184	48.084	48.286	-0.1437					5	3	2	0	0	0	0.26096	1	18489	18489		9.3474	8.8891	1	15744000			3696	8316	1875	1898	3621	3621					-0.03293617476833788
APAPGHRRPP	10	Unmodified	_APAPGHRRPP_					0	0	0			REV__ENST00000262305.8_2_16:475669-476173:+|nuORF	REV__ENST00000262305.8_2_16:475669-476173:+|nuORF	MSMS	HCT116MG_D190212_S2	2	528.5482788085938	2	528.296499	1054.57845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.25	1	49.096	48.596	49.596	-0.15405								0	0	0	0.91507	1	18843	18843		12.532	0	1		+		3697	14636	1876	1899	3622	3622					0.0533392272564015
APAPHSLPEPV	11	Unmodified	_APAPHSLPEPV_					0	0	0		ETV5|p.G185V|1|0.07|ENSG00000244405|chr3:186079913-186079913|C/A|missense_variant	ETV5|p.G185V|1|0.07|ENSG00000244405|chr3:186079913-186079913|C/A|missense_variant	ETV5|p.G185V|1|0.07|ENSG00000244405|chr3:186079913-186079913|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	557.3137817382812	2	557.798206	1113.58186	0.1441	8.0376E-05	0.37948	0.00021167	0.52358	0.00029205	557.7984756464169	37.788	0.25763	37.688	37.593	37.85	-0.099514					5	4	2	0	0	0	0.73177	1	14145	14145		10.074	0.72649	1	15463000			3698	9141	1877	1900	3623	3623					0.029611279890104925
APAPHSLPEPV	11	Unmodified	_APAPHSLPEPV_					0	0	0		ETV5|p.G185V|1|0.07|ENSG00000244405|chr3:186079913-186079913|C/A|missense_variant	ETV5|p.G185V|1|0.07|ENSG00000244405|chr3:186079913-186079913|C/A|missense_variant	ETV5|p.G185V|1|0.07|ENSG00000244405|chr3:186079913-186079913|C/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	557.798206	1113.58186	0.40459	0.00022568	0.95575	0.00053312	1.3603	0.0007588	557.7982600026531	37.785	0.15627	37.785	37.655	37.811	0	0.048295	0.00059665	NaN	10.074	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9139200			3699	9141	1877	1900							0.029611279890104925
APAPKRLSVP	10	Unmodified	_APAPKRLSVP_					0	0	0		ENST00000438934.5_2_22:18958062-18975611:+|nuORF;ENST00000440005.6_2_22:18958062-18978324:+|nuORF	ENST00000438934.5_2_22:18958062-18975611:+|nuORF	ENST00000438934.5_2_22:18958062-18975611:+|nuORF	MSMS	HCT116MG_D190212_S4	4	518.5304565429688	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.82	1	51.473	50.973	51.973	-0.34713								0	0	0	0.95351	1	19298	19298		3.9444	1.8846	1				3700	7905	1878	1901	3624	3624					0.1077372846821163
APAPLPYQNW	10	Unmodified	_APAPLPYQNW_					0	0	0		ENST00000557373.1_1_14:35343833-35343968:+|nuORF	ENST00000557373.1_1_14:35343833-35343968:+|nuORF	ENST00000557373.1_1_14:35343833-35343968:+|nuORF	MSMS	HCT116MG_D190212_S2	2	579.1356201171875	2	578.792924	1155.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.025	1	47.892	47.392	48.392	-0.13281								0	0	0	0.93576	1	18335	18335		7.9102	0.62092	1				3701	8794	1879	1902	3625	3625					-0.0002685466542970971
APAPPAIWLAW	11	Unmodified	_APAPPAIWLAW_					0	0	0		ENST00000570099.5_1_16:30103671-30103908:-|nuORF	ENST00000570099.5_1_16:30103671-30103908:-|nuORF	ENST00000570099.5_1_16:30103671-30103908:-|nuORF	MSMS	HCT116MG_D190212_S3	3	596.8296508789062	2	596.829309	1191.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.804	1	50.49	49.99	50.99	-0.31381								0	0	0	0.94924	1	19167	19167		6.7232	0	1				3702	8886	1880	1903	3626	3626					0.05590899127992088
APAPQVRNH	9	Unmodified	_APAPQVRNH_					0	0	0		nc|ENSG00000204396|Q9Y334-2|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	MSMS	HCT116MG_D190212_S3	3	495.35687255859375	2	495.267407	988.520262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.918	1	49.602	49.102	50.102	-0.31525								0	0	0	0.7676	1	18810	18810		9.3474	0.75416	1				3703	9609	1881	1904	3627	3627					0.025542410803723214
APAPRLVGAPL	11	Unmodified	_APAPRLVGAPL_					0	0	0		ENST00000320431.7_1_3:49756545-49756929:-|nuORF	ENST00000320431.7_1_3:49756545-49756929:-|nuORF	ENST00000320431.7_1_3:49756545-49756929:-|nuORF	MSMS	HCT116MG_D190212_S4	4	531.324951171875	2	531.326934	1060.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.742	1	50.387	49.887	50.887	-0.35483								0	0	0	0.9414	1	18863	18863		10.824	0	1				3704	7099	1882	1905	3628	3628					0.1114201498521652
APAPSACLWYV	11	Unmodified	_APAPSACLWYV_					0	0	0		ENST00000564397.5_1_16:5075481-5078139:-|nuORF	ENST00000564397.5_1_16:5075481-5078139:-|nuORF	ENST00000564397.5_1_16:5075481-5078139:-|nuORF	MSMS	HCT116MG_D190212_S3	3	589.500732421875	2	589.289159	1176.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.678	1	49.362	48.862	49.862	-0.31596								0	0	0	0.94924	1	18714	18714		6.7232	0	1				3705	8844	1883	1906	3629	3629					-0.01745330257358546
APAQKRLRRR	10	Unmodified	_APAQKRLRRR_					0	0	0			REV__CDH5|p.R629P|1|0.38|ENSG00000179776|chr16:66402700-66402700|G/C|missense_variant	REV__CDH5|p.R629P|1|0.38|ENSG00000179776|chr16:66402700-66402700|G/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	626.1876831054688	2	626.397079	1250.7796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.09	1	47.957	47.457	48.457	-0.13281								0	0	0	0.90023	1	18362	18362		15.847	7.6917	1		+		3706	10136	1884	1907	3630	3630					0.16424611762158747
APAQRPRRVP	10	Unmodified	_APAQRPRRVP_					0	0	0			REV__ENST00000597060.1_1:2121284-2121554:+|nuORF	REV__ENST00000597060.1_1:2121284-2121554:+|nuORF	MSMS	HCT116MG_D190212_S4	4	574.3428344726562	2	574.343981	1146.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.358	1	36.974	36.474	37.474	-0.3839								0	0	0	0.93854	1	13706	13706		7.2892	2.96	1		+		3707	16727	1885	1908	3631	3631					0.10593856196851448
APAQSAGFEWC	11	Unmodified	_APAQSAGFEWC_					0	0	0			REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	MSMS	HCT116MG_D190212_S1	1	583.7503662109375	2	583.750398	1165.48624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.344	1	27.344	26.844	27.844	0								0	0	0	0.94538	1	9918	9918		8.7454	0.15213	1		+		3708	16557	1886	1909	3632	3632					-0.08987968193537199
APARAKRGRRR	11	Unmodified	_APARAKRGRRR_					0	0	0			REV__ENST00000489702.6_2_7:128588962-128589106:+|nuORF	REV__ENST00000489702.6_2_7:128588962-128589106:+|nuORF	MSMS	HCT116MG_D190212_S3	3	647.9078369140625	2	647.905602	1293.79665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.396	1	51.084	50.584	51.584	-0.31166								0	0	0	0.95521	1	19405	19405		3.5965	0	1		+		3709	16026	1887	1910	3633	3633					0.16150532367964843
APARGGAF	8	Unmodified	_APARGGAF_					0	0	0			REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	MSMS	HCT116MG_D190212_S2	2	373.7000732421875	2	373.700838	745.387122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.651	1	25.282	24.782	25.782	-0.36914								0	0	0	0.8837	1	9246	9246		6.3541	3.4649	1		+		3710	14695	1888	1911	3634	3634					0.004244216945153312
APARQPVLPL	10	Unmodified	_APARQPVLPL_					0	0	0			REV__ENST00000400451.6_1_22:20760237-20760540:+|nuORF	REV__ENST00000400451.6_1_22:20760237-20760540:+|nuORF	MSMS	HCT116MG_D190212_S2	2	531.3720092773438	2	531.326934	1060.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.227	1	50.055	49.555	50.555	-0.1719								0	0	0	0.91906	1	19246	19246		11.64	0.81637	1		+		3711	15390	1889	1912	3635	3635					0.11142014985239257
APARRSKQRRG	11	Unmodified	_APARRSKQRRG_					0	0	0			REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant	REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	641.883056640625	2	641.881793	1281.74903	0.56174	0.00036057	1.0103	0.00064847	1.572	0.001009	641.8822277472295	54.499	0.57314	54.176	53.932	54.505	-0.32348					15	10	3	0	0	0	0.74191	1	20368	20368		1.4819	0	1	2088400	+		3712	10418	1890	1913	3636	3636					0.11942833377111128
APARRSKQRRG	11	Unmodified	_APARRSKQRRG_					0	0	0			REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant	REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	641.881793	1281.74903	0.55364	0.00035537	1.1771	0.00075557	1.7308	0.0011109	641.8824596483349	54.381	1.1782	54.191	53.687	54.865	-0.1894	0.0076624	8.5041E-05	NaN	1.4819	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19398000	+		3713	10418	1890	1913							0.11942833377111128
APARRSKQRRG	11	Unmodified	_APARRSKQRRG_					0	0	0			REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant	REV__DTX3|p.G110Vfs*86|1|0.17|ENSG00000178498|chr12:57607187-57607187|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	641.881793	1281.74903	0.56174	0.00036057	1.0103	0.00064847	1.572	0.001009	641.8822277472295	54.499	0.57314	54.176	53.932	54.505	-0.32348	-0.0076624	-0.00012916	NaN	1.4819	15	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2088400	+		3714	10418	1890	1913							0.11942833377111128
APASPSPG	8	Unmodified	_APASPSPG_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	HCT116MG_D190212_S2	2	683.33642578125	1	683.335881	682.328604	0.22482	0.00015363	0.56489	0.00038601	0.78971	0.00053964	683.3362445035274	19.049	1.0947	18.68	17.95	19.044	-0.3695					29	20	2	0	0	0	0.23352	1	6691	6691		67.035	7.2401	1	6132300			3715	6665	1891	1914	3637	3637					-0.025266796706091554
APASRLHVPA	10	Unmodified	_APASRLHVPA_					0	0	0			REV__ENST00000542550.5_2_12:30907680-30907779:-|nuORF	REV__ENST00000542550.5_2_12:30907680-30907779:-|nuORF	MSMS	HCT116MG_D190212_S3	3	509.7953796386719	2	509.793258	1017.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.87	1	52.564	52.064	53.064	-0.30639								0	0	0	0.93576	1	19997	19997		7.9102	0.62092	1		+		3716	16360	1892	1915	3638	3638					0.06387984774266897
APASSPGPGPP	11	Unmodified	_APASSPGPGPP_					0	0	0			REV__ENSG00000188766|ENST00000691638|SPRED3	REV__ENSG00000188766|ENST00000691638|SPRED3	MSMS	HCT116MG_D190212_S4	4	467.7355041503906	2	467.735074	933.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.643	1	22.405	21.905	22.905	-0.23758								0	0	0	0.81739	1	7888	7888		30.637	0	1		+		3717	13970	1893	1916	3639	3639					-0.013793785162761196
APATKKSL	8	Unmodified	_APATKKSL_					0	0	0			REV__ENSG00000226650|ENST00000435029|KIF4B	REV__ENSG00000226650|ENST00000435029|KIF4B	MSMS	HCT116MG_D190212_S2	2	408.2514953613281	2	408.252903	814.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.53	1	49.367	48.867	49.867	-0.16369								0	0	0	0.8837	1	18959	18959		6.3541	1.1234	1		+		3718	14310	1894	1917	3640	3640					0.07658703731385685
APATLLMKQA	10	Unmodified	_APATLLMKQA_					0	0	0		nc|ENSG00000054965|Q92567-3|FAM168A;FAM168A|p.Y123Tfs*89|2|0.29|ENSG00000054965|chr11:73411475-73411475|G/-|frameshift_variant;ENSG00000054965|ENST00000356467|FAM168A	nc|ENSG00000054965|Q92567-3|FAM168A	nc|ENSG00000054965|Q92567-3|FAM168A	MSMS	HCT116MG_D190212_S3	3	522.3009643554688	2	522.299527	1042.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.801	1	51.492	50.992	51.992	-0.30927								0	0	0	0.93854	1	19567	19567		7.2892	1.5574	1				3719	1075	1895	1918	3641	3641					0.0649126012231136
APATRSRATP	10	Unmodified	_APATRSRATP_					0	0	0		nc|ENSG00000127586|Q8WVB6-3|CHTF18;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-3|CHTF18	nc|ENSG00000127586|Q8WVB6-3|CHTF18	MSMS	HCT116MG_D190212_S3	3	513.8125	2	514.285797	1026.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.858	1	50.545	50.045	51.045	-0.31381								0	0	0	0.91906	1	19189	19189		11.64	0.81637	1				3720	2972	1896	1919	3642	3642					0.044824929062770025
APAVYSSLIY	10	Unmodified	_APAVYSSLIY_					0	0	0			REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF	REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF	MSMS	HCT116MG_D190212_S3	3	542.5208740234375	2	542.289682	1082.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.288	1	50.977	50.477	51.477	-0.31166								0	0	0	0.75886	1	19362	19362		34.102	1.797	1		+		3721	15499	1897	1920	3643	3643					0.026832073832110837
APAWLRAPLR	10	Unmodified	_APAWLRAPLR_					0	0	0			REV__MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant	REV__MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	575.87353515625	2	575.845825	1149.6771	0.65997	0.00038004	-2.9111	-0.0016763	-2.2511	-0.0012963	576.3460056417337	48.063	1.1833	47.93	46.911	48.095	-0.13281					33	22	2	0	0	0	0.85662	1	18415	18415		7.2892	0	1	106300000	+		3722	17030	1898	1921	3644	3644					0.1082452597070187
APAWPSFDCWH	11	Unmodified	_APAWPSFDCWH_					0	0	0		ENST00000369774.8_3_10:105361047-105361260:-|nuORF	ENST00000369774.8_3_10:105361047-105361260:-|nuORF	ENST00000369774.8_3_10:105361047-105361260:-|nuORF	MSMS	HCT116MG_D190212_S3	3	658.7811889648438	2	658.77949	1315.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.273	1	49.958	49.458	50.458	-0.31525								0	0	0	0.95521	1	18953	18953		3.5965	0	1				3723	7414	1899	1922	3645	3645					-0.10072286548279408
APCYGYDE	8	Unmodified	_APCYGYDE_					0	0	0		ENST00000552852.1_1_12:76509499-76509865:+|nuORF	ENST00000552852.1_1_12:76509499-76509865:+|nuORF	ENST00000552852.1_1_12:76509499-76509865:+|nuORF	MSMS	HCT116MG_D190212_S3	3	459.17218017578125	2	459.170918	916.327284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.4	1	10.44	9.9398	10.94	0.039975								0	0	0	0.8837	1	3150	3150		0.79363	0.79363	1				3724	8766	1900	1923	3646	3646					-0.1342268182169164
APDAGGRPAQ	10	Unmodified	_APDAGGRPAQ_					0	0	0		ENST00000307161.5_1_4:187455227-187455620:-|nuORF	ENST00000307161.5_1_4:187455227-187455620:-|nuORF	ENST00000307161.5_1_4:187455227-187455620:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	470.23553466796875	2	470.235773	938.456993	0.24837	0.00011679	-0.002954	-1.3891E-06	0.24542	0.00011541	470.23563492480275	15.926	0.31246	15.926	15.744	16.056	0					11	5	3	0	0	0	0.33238	1	5326	5326		47.594	1.8948	1	13522000			3725	7031	1901	1924	3647	3647					-0.014697444275270755
APDAGGRPAQ	10	Unmodified	_APDAGGRPAQ_					0	0	0		ENST00000307161.5_1_4:187455227-187455620:-|nuORF	ENST00000307161.5_1_4:187455227-187455620:-|nuORF	ENST00000307161.5_1_4:187455227-187455620:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2361145019531	2	470.235773	938.456993	0.15413	7.2479E-05	0.11943	5.616E-05	0.27356	0.00012864	470.2357715723721	16.154	0.67892	15.82	15.48	16.159	-0.33451					28	12	4	0	0	0	0.15126	1	5403	5403		63.961	12.331	1	64285000			3726	7031	1901	1924	3648	3648					-0.014697444275270755
APDGSHRP	8	Unmodified	_APDGSHRP_					0	0	0			REV__ENST00000580710.5_1_7:86782123-86783706:+|nuORF	REV__ENST00000580710.5_1_7:86782123-86783706:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	418.2000427246094	2	418.704109	835.393664	-0.02248	-9.4125E-06	0.20345	8.5187E-05	0.18097	7.5774E-05	418.70411731735294	16.504	0.52007	16.589	16.341	16.861	0.085423					15	9	2	0	0	0	0.3238	1	5417	5417		5.7604	0.52976	1	6166800	+		3727	16623	1902	1925	3649	3649					-0.03061685144768944
APDPGPAG	8	Unmodified	_APDPGPAG_					0	0	0		ENST00000484824.2_1_20:32257487-32262158:-|nuORF;ENST00000606699.5_1_20:32258166-32262158:-|nuORF;nc|ENSG00000125967|Q96P71-3|NECAB3;nc|ENSG00000125967|Q96P71-2|NECAB3;ENSG00000125967|ENST00000246190|NECAB3	ENST00000484824.2_1_20:32257487-32262158:-|nuORF	ENST00000484824.2_1_20:32257487-32262158:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	681.3198852539062	1	681.320231	680.312954	0.064085	4.3662E-05	0.51636	0.00035181	0.58045	0.00039547	681.3204412434117	18.423	0.83411	18.06	17.591	18.425	-0.36325					24	15	2	0	0	0	0.19622	1	6221	6221		74.396	7.361	1	7417600			3728	2920	1903	1926	3650	3650					-0.039989661876575155
APDPGPAG	8	Unmodified	_APDPGPAG_					0	0	0		ENST00000484824.2_1_20:32257487-32262158:-|nuORF;ENST00000606699.5_1_20:32258166-32262158:-|nuORF;nc|ENSG00000125967|Q96P71-3|NECAB3;nc|ENSG00000125967|Q96P71-2|NECAB3;ENSG00000125967|ENST00000246190|NECAB3	ENST00000484824.2_1_20:32257487-32262158:-|nuORF	ENST00000484824.2_1_20:32257487-32262158:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	681.3202514648438	1	681.320231	680.312954	0.74731	0.00050916	-0.33284	-0.00022677	0.41446	0.00028238	681.3198465176291	17.947	2.1338	18.023	16.54	18.674	0.076334					74	40	2	0	0	0	0.10511	2	6067	5835;6067		93.883	7.361	1	8871100			3729	2920	1903	1926	3651;3652	3652					-0.039989661876575155
APEDASEESL	10	Unmodified	_APEDASEESL_					0	0	0			REV__IP6K2|p.S363P|1|0.4|ENSG00000068745|chr3:48688467-48688467|A/G|missense_variant	REV__IP6K2|p.S363P|1|0.4|ENSG00000068745|chr3:48688467-48688467|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	524.1226196289062	2	524.227476	1046.4404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.555	1	50.241	49.741	50.741	-0.31381								0	0	0	0.92607	1	19067	19067		10.074	1.4806	1		+		3730	16903	1904	1927	3653	3653					-0.08096334894798929
APEEEEDEADM	11	Unmodified	_APEEEEDEADM_					0	0	0		ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant;ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant	ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	632.9051513671875	2	632.729723	1263.44489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.342	1	48.199	47.699	48.699	-0.1437								0	0	0	0.95581	1	18467	18467		3.2813	1.6287	1				3731	5095	1905	1928	3654	3654					-0.17629238534186698
APEGEWFMEM	10	Unmodified	_APEGEWFMEM_					0	0	0			REV__ENST00000527010.1_1_11:66496354-66496435:-|nuORF	REV__ENST00000527010.1_1_11:66496354-66496435:-|nuORF	MSMS	HCT116MG_D190212_S2	2	613.878662109375	2	613.746467	1225.47838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.935	1	48.781	48.281	49.281	-0.15405								0	0	0	0.95351	1	18712	18712		3.9444	0	1		+		3732	16281	1906	1929	3655	3655					-0.1253386350533674
APEPILRDW	9	Unmodified	_APEPILRDW_					0	0	0		ENST00000498020.1_1_6:32904922-32905177:-|nuORF;ENSG00000242574|ENST00000418107|HLA-DMB	ENST00000498020.1_1_6:32904922-32905177:-|nuORF	ENST00000498020.1_1_6:32904922-32905177:-|nuORF	MSMS	HCT116MG_D190212_S2	2	548.7933959960938	2	548.792924	1095.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.764	1	42.694	42.194	43.194	-0.069984								0	0	0	0.76603	1	16195	16195		14.838	0	1				3733	6555	1907	1930	3656	3656					0.027331453345368573
APEQPQLKL	9	Unmodified	_APEQPQLKL_					0	0	0			REV__ENST00000588094.1_1_19:44405308-44405362:-|nuORF	REV__ENST00000588094.1_1_19:44405308-44405362:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	511.8259582519531	2	512.295299	1022.57605	0.40468	0.00020732	2.752	0.0014098	3.1566	0.0016171	512.2967813492917	48.565	0.35525	48.422	48.286	48.642	-0.1437					10	6	2	0	0	0	0.57626	1	18563	18563		12.532	1.7076	1	24433000	+		3734	16668	1908	1931	3657	3657					0.0656602947731244
APERDTDPP	9	Unmodified	_APERDTDPP_					0	0	0		nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;ARHGEF10L|p.F122Sfs*8|1|0.23|ENSG00000074964|chr1:17603521-17603521|T/-|frameshift_variant;ARHGEF10L|p.P650Hfs*34|1|0.39|ENSG00000074964|chr1:17637904-17637904|C/-|frameshift_variant	nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	MULTI-MSMS	HCT116MG_D190212_S2	2	499.2331237792969	2	499.232896	996.451239	0.30089	0.00015021	-0.16646	-8.3104E-05	0.13442	6.7109E-05	499.23298224247816	15.945	0.20876	15.611	15.48	15.689	-0.33451					7	3	3	0	0	0	0.63193	1	5359	5359		9.3474	0.60203	1	4315700			3735	1304	1909	1932	3658	3658					-0.047128877298746374
APERECWTLP	10	Unmodified	_APERECWTLP_					0	0	0		ENST00000253401.10_1_X:62974617-62974755:-|nuORF	ENST00000253401.10_1_X:62974617-62974755:-|nuORF	ENST00000253401.10_1_X:62974617-62974755:-|nuORF	MSMS	HCT116MG_D190212_S4	4	601.2877197265625	2	601.287148	1200.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.791	1	50.436	49.936	50.936	-0.35483								0	0	0	0.93854	1	18883	18883		7.2892	0.56607	1				3736	6806	1910	1933	3659	3659					-0.032514197510863596
APETLAPV	8	Unmodified	_APETLAPV_					0	0	0		ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	MSMS	HCT116MG_D190212_S3	3	399.2225036621094	2	399.223811	796.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.194	1	37.893	37.393	38.393	-0.30137								0	0	0	0.8837	1	14140	14140		15.768	4.6538	1				3737	4350	1911	1934	3660	3660					0.026710220860991285
APFLCPIP	8	Unmodified	_APFLCPIP_					0	0	0		ENST00000465550.5_1_2:220096599-220096731:+|nuORF	ENST00000465550.5_1_2:220096599-220096731:+|nuORF	ENST00000465550.5_1_2:220096599-220096731:+|nuORF	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	2	429.233125	856.451696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.331	1	26.181	25.681	26.681	-0.14924								0	0	0	0.8837	1	9441	9441		11.114	0	1				3738	8091	1912	1935	3661	3661					0.017728604562989858
APFLCPIP	8	Unmodified	_APFLCPIP_					0	0	0		ENST00000465550.5_1_2:220096599-220096731:+|nuORF	ENST00000465550.5_1_2:220096599-220096731:+|nuORF	ENST00000465550.5_1_2:220096599-220096731:+|nuORF	MSMS	HCT116MG_D190212_S3	3	429.088623046875	2	429.233125	856.451696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.47	1	31.2	30.7	31.7	-0.27028								0	0	0	0.8837	1	11498	11498		6.3541	0	1				3739	8091	1912	1935	3662	3662					0.017728604562989858
APGAAAPSSGP	11	Unmodified	_APGAAAPSSGP_					0	0	0		PREX1|p.L957Pfs*50|1|0.25|ENSG00000124126|chr20:48650154-48650155|-/G|frameshift_variant;nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1	PREX1|p.L957Pfs*50|1|0.25|ENSG00000124126|chr20:48650154-48650155|-/G|frameshift_variant	PREX1|p.L957Pfs*50|1|0.25|ENSG00000124126|chr20:48650154-48650155|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	441.71954345703125	2	441.719424	881.424296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.535	1	15.62	15.12	16.12	0.085423								0	0	0	0.93181	1	5090	5090		15.847	0.078963	1				3740	2825	1913	1936	3663	3663					-0.021159515503882176
APGAAGRLQED	11	Unmodified	_APGAAGRLQED_					0	0	0			REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7726440429688	2	542.772719	1083.53089	0.35875	0.00019472	0.43148	0.0002342	0.79023	0.00042892	542.7729831550354	14.561	0.521	14.242	14.088	14.609	-0.31952					12	9	2	0	0	0	0.59037	1	4783	4783		36.506	8.0117	1	1602400	+		3741	16705	1914	1937	3664	3664					-0.007538210558550418
APGADAGHAAQ	11	Unmodified	_APGADAGHAAQ_					0	0	0			REV__ENST00000480137.1_1_7:128446747-128451900:+|nuORF	REV__ENST00000480137.1_1_7:128446747-128451900:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	483.2249755859375	2	483.225405	964.436257	0.13944	6.738E-05	1.1232	0.00054276	1.2626	0.00061014	483.225754105644	20.008	0.92599	19.814	19.434	20.36	-0.19367					23	17	2	0	0	0	0.70377	1	6830	6830		20.415	1.0526	1	2654700	+		3742	15943	1915	1938	3665	3665					-0.04738334807200317
APGAEQNNY	9	Unmodified	_APGAEQNNY_					0	0	0			REV__SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant	REV__SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	481.73126220703125	2	482.211963	962.409374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.138	1	16.223	15.723	16.723	0.085424								0	0	0	0.76781	1	5333	5333		8.5933	0.68312	1		+		3743	14253	1916	1939	3666	3666					-0.07333443418383467
APGAPGPAPGR	11	Unmodified	_APGAPGPAPGR_					0	0	0		ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ADAMTS7|p.L864Wfs*93|2|0.38|ENSG00000136378|chr15:78768188-78768188|G/-|frameshift_variant;ENSG00000136378|ENST00000388820|ADAMTS7	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	MSMS	HCT116MG_D190212_S3	3	474.2569274902344	2	474.256508	946.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.7	1	18.769	18.269	19.269	0.069159								0	0	0	0.58282	1	6367	6367		43.858	7.8141	1				3744	49	1917	1940	3667	3667					0.02307436331795998
APGAPGPAPGR	11	Unmodified	_APGAPGPAPGR_					0	0	0		ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ADAMTS7|p.L864Wfs*93|2|0.38|ENSG00000136378|chr15:78768188-78768188|G/-|frameshift_variant;ENSG00000136378|ENST00000388820|ADAMTS7	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	MSMS	HCT116MG_D190212_S4	4	474.2565612792969	2	474.256508	946.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.002	1	18.815	18.315	19.315	-0.18674								0	0	0	0.0017892	1	6416	6416		92.491	3.5878	1				3745	49	1917	1940	3668	3668					0.02307436331795998
APGAPGPLGVP	11	Unmodified	_APGAPGPLGVP_					0	0	0			REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	466.76409912109375	2	466.763635	931.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.936	1	40.634	40.134	41.134	-0.30185								0	0	0	0.57038	1	15213	15213		44.407	8.3628	1		+		3746	10221	1918	1941	3669	3669					0.04422088760088627
APGAPGPLGVP	11	Unmodified	_APGAPGPLGVP_					0	0	0			REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	466.76385498046875	2	466.763635	931.512717	-0.035029	-1.635E-05	0.10517	4.9087E-05	0.070136	3.2737E-05	466.7636674859529	40.86	0.28642	40.483	40.338	40.625	-0.37757					8	5	2	0	0	0	0.51914	1	15015	15015		44.407	17.523	1	2892800	+		3747	10221	1918	1941	3670	3670					0.04422088760088627
APGDEGGKP	9	Unmodified	_APGDEGGKP_					0	0	0			REV__ENSG00000120756|ENST00000457734|PLS1	REV__ENSG00000120756|ENST00000457734|PLS1	MSMS	HCT116MG_D190212_S4	4	414.1982727050781	2	414.198325	826.382096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.136	1	19.939	19.439	20.439	-0.19721								0	0	0	0.71969	1	6874	6874		18.135	2.2878	1		+		3748	11698	1919	1942	3671	3671					-0.0380392695875571
APGDVAGTGQP	11	Unmodified	_APGDVAGTGQP_					0	0	0		ENST00000354293.9_1_19:50310018-50310102:+|nuORF	ENST00000354293.9_1_19:50310018-50310102:+|nuORF	ENST00000354293.9_1_19:50310018-50310102:+|nuORF	MSMS	HCT116MG_D190212_S4	4	485.23577880859375	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.173	1	16.009	15.509	16.509	-0.16364								0	0	0	0.85129	1	5273	5273		26.268	3.5319	1				3749	7283	1920	1943	3672	3672					-0.02916583867238387
APGEEKGEV	9	Unmodified	_APGEEKGEV_					0	0	0			REV__ENST00000465409.1_1_10:104183641-104183911:-|nuORF	REV__ENST00000465409.1_1_10:104183641-104183911:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	458.2247009277344	2	458.224539	914.434526	0.12847	5.887E-05	0.18936	8.6769E-05	0.31783	0.00014564	458.2244471842362	30.124	0.26004	29.767	29.649	29.909	-0.35711					7	4	2	0	0	0	0.30509	1	10931	10931		30.225	3.3412	1	3186500	+		3750	11330	1921	1944	3673	3673					-0.0261138861579866
APGEQAVAGPA	11	Unmodified	_APGEQAVAGPA_					0	0	0		nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;WNK1|p.F283Lfs*8|1|0.19|ENSG00000060237|chr12:813730-813733|TTTA/-|frameshift_variant	nc|ENSG00000060237|Q9H4A3-2|WNK1	nc|ENSG00000060237|Q9H4A3-2|WNK1	MULTI-MSMS	HCT116MG_D190212_S4	4	484.7439270019531	2	484.245806	966.47706	0.2411	0.00011675	-0.1649	-7.9853E-05	0.076195	3.6897E-05	484.24577668493254	24.74	0.98625	24.471	23.823	24.809	-0.26881					35	18	3	0	0	0	0.70367	1	8583	8583		20.454	5.2051	1	16006000			3751	1107	1922	1945	3674	3674					-0.0075199348757450934
APGEQAVAGPA	11	Unmodified	_APGEQAVAGPA_					0	0	0		nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;WNK1|p.F283Lfs*8|1|0.19|ENSG00000060237|chr12:813730-813733|TTTA/-|frameshift_variant	nc|ENSG00000060237|Q9H4A3-2|WNK1	nc|ENSG00000060237|Q9H4A3-2|WNK1	MULTI-MSMS	HCT116MG_D190212_S4	4	484.239990234375	2	484.245806	966.47706	0.093806	4.5425E-05	0.59613	0.00028868	0.68994	0.0003341	484.24631153211084	27.028	0.46764	26.716	26.379	26.847	-0.3114					15	8	3	0	0	0	0.71614	1	9560	9560		15.847	1.9411	1	13290000			3752	1107	1922	1945	3675	3675					-0.0075199348757450934
APGEYMYF	8	Unmodified	_APGEYMYF_					0	0	0			REV__ENPP3|p.N789Tfs*54|1|0.21|ENSG00000154269|chr6:131740285-131740285|A/-|frameshift_variant	REV__ENPP3|p.N789Tfs*54|1|0.21|ENSG00000154269|chr6:131740285-131740285|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	489.20947265625	2	489.207304	976.400055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.138	1	48.005	47.505	48.505	-0.13281								0	0	0	0.8837	1	18382	18382		6.3541	0.59368	1		+		3753	10459	1923	1946	3676	3676					-0.08908928028267837
APGGAAHGG	9	Unmodified	_APGGAAHGG_					0	0	0			REV__SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant	REV__SEMA6C|p.P861Lfs*37|2|0.24|ENSG00000143434|chr1:151132695-151132695|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	694.3283081054688	1	694.326713	693.319437	0.69967	0.0004858	1.7063	0.0011847	2.406	0.0016705	694.3276385554547	23.274	0.20855	23.274	23.158	23.366	0					5	3	2	0	0	0	0.63193	1	8310	8310		9.3474	0	1	4254200	+		3754	12391	1924	1947	3677	3677					-0.039490282362748985
APGGAQPWM	9	Unmodified	_APGGAQPWM_					0	0	0			REV__ENST00000509340.1_1_4:89204940-89205258:-|nuORF	REV__ENST00000509340.1_1_4:89204940-89205258:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	457.713623046875	2	457.713088	913.411622	0.5287	0.00024199	0.35235	0.00016127	0.88105	0.00040327	457.7132407724395	53.301	0.31392	52.998	52.773	53.087	-0.30305					8	5	2	0	0	0	0.65706	1	20183	20183		7.9102	7.9102	1	3452000	+		3755	16166	1925	1948	3678	3678					-0.04854686214264348
APGGAQPWM	9	Unmodified	_APGGAQPWM_					0	0	0			REV__ENST00000509340.1_1_4:89204940-89205258:-|nuORF	REV__ENST00000509340.1_1_4:89204940-89205258:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	457.713088	913.411622	0.5287	0.00024199	0.35235	0.00016127	0.88105	0.00040327	457.7132407724395	53.301	0.31392	52.998	52.773	53.087	-0.30305	0.055222	-5.3579E-05	NaN	7.9102	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3452000	+		3756	16166	1925	1948							-0.04854686214264348
APGGIEDFPKR	11	Unmodified	_APGGIEDFPKR_					0	0	0			REV__nc|ENSG00000135341|O43318-4|MAP3K7	REV__nc|ENSG00000135341|O43318-4|MAP3K7	MSMS	HCT116MG_D190212_S4	4	396.21234130859375	3	396.212017	1185.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.605	1	32.225	31.725	32.725	-0.37924								0	0	0	0.95244	1	11882	11882		5.0475	0.64137	1		+		3757	12086	1926	1949	3679	3679					0.028839153919761884
APGIHVSSEG	10	Unmodified	_APGIHVSSEG_					0	0	0		nc|ENSG00000079841|Q86UR5-12|RIMS1;nc|ENSG00000079841|Q86UR5-13|RIMS1	nc|ENSG00000079841|Q86UR5-12|RIMS1	nc|ENSG00000079841|Q86UR5-12|RIMS1	MSMS	HCT116MG_D190212_S1	1	477.23779296875	2	477.237981	952.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.543	1	15.543	15.043	16.043	0								0	0	0	0.90023	1	5171	5171		15.847	1.0089	1				3758	9383	1927	1950	3680	3680					-0.016722800046181874
APGKKRKREPE	11	Unmodified	_APGKKRKREPE_					0	0	0			REV__ENSG00000131408|ENST00000253727|NR1H2	REV__ENSG00000131408|ENST00000253727|NR1H2	MULTI-MSMS	HCT116MG_D190212_S2	2	647.9778442382812	2	648.38076	1294.74697	0.65764	0.0004264	-0.75542	-0.0004898	-0.097782	-6.34E-05	648.3801183279251	51.147	1.3999	50.969	50.132	51.532	-0.17869					41	26	2	0	0	0	0.74191	1	19282	19282		3.5965	3.5965	1	19750000	+		3759	11962	1928	1951	3681	3681					0.11138359848632717
APGKRLHRQT	10	Unmodified	_APGKRLHRQT_					0	0	0		ENST00000355508.3_1_7:2966407-2969665:-|nuORF;ENST00000396946.8_1_7:2966407-2969665:-|nuORF	ENST00000355508.3_1_7:2966407-2969665:-|nuORF	ENST00000355508.3_1_7:2966407-2969665:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	582.3411865234375	2	582.341438	1162.66832	0.46583	0.00027127	-1.071	-0.00062366	-0.60512	-0.00035239	582.3404946027001	49.075	0.72266	49.075	48.614	49.337	0					19	13	2	0	0	0	0.87945	1	18690	18690		3.5965	0	1	14731000			3760	7292	1929	1952	3682	3682					0.09349552334197142
APGLDQSPGH	10	Unmodified	_APGLDQSPGH_					0	0	0		ENST00000419895.3_1_11:112161044-112161188:+|nuORF	ENST00000419895.3_1_11:112161044-112161188:+|nuORF	ENST00000419895.3_1_11:112161044-112161188:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	489.7361145019531	2	489.735606	977.456658	-0.12368	-6.0571E-05	0.5022	0.00024594	0.37852	0.00018537	489.7358932034471	17.2	0.93656	17.284	16.704	17.641	0.084467					22	17	2	0	0	0	0.45751	1	5752	5752		38.176	1.6694	1	2411300			3761	7776	1930	1953	3683	3683					-0.032971641473750424
APGLGSCW	8	Unmodified	_APGLGSCW_					0	0	0		ENST00000396008.2_1_22:46447675-46449969:-|nuORF	ENST00000396008.2_1_22:46447675-46449969:-|nuORF	ENST00000396008.2_1_22:46447675-46449969:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	789.7041625976562	1	790.355236	789.34796	0.74928	0.0005922	-0.19824	-0.00015668	0.55104	0.00043552	790.3551245596904	28.481	0.26073	28.275	28.072	28.333	-0.20593					7	4	2	0	0	0	0.30658	1	10246	10246		17.087	10.732	1	1652900			3762	7650	1931	1954	3684	3684					-0.05514046651364879
APGLLDSLY	9	Unmodified	_APGLLDSLY_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000463580.5_1_2:95940333-95943708:+|nuORF;ENST00000487138.5_1_2:95940333-95943144:+|nuORF	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-MSMS	HCT116MG_D190212_S3	3	474.5082702636719	2	474.755475	947.496398	0.089843	4.2653E-05	-0.29854	-0.00014174	-0.2087	-9.9082E-05	474.75523994874766	49.683	0.26119	49.367	49.132	49.393	-0.31596					7	4	2	0	0	0	0.54041	1	18723	18723		14.582	3.4672	1	4711200			3763	4237	1932	1955	3685	3685					0.020549628033336376
APGLRKPP	8	Unmodified	_APGLRKPP_					0	0	0		SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant;SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.P368Qfs*21|1|0.28|ENSG00000087266|chr4:2830004-2830004|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant;ENST00000515737.5_1_4:2825262-2835558:+|nuORF;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2	SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant	SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	418.26116943359375	2	418.261062	834.507572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.596	1	16.254	15.754	16.754	-0.34183								0	0	0	0.8837	1	5595	5595		10.183	0.83596	1				3764	1482	1933	1956	3686	3686					0.08369829688126629
APGPAGRP	8	Unmodified	_APGPAGRP_					0	0	0		ENST00000560504.1_1_15:65115949-65116540:-|nuORF;nc|ENSG00000140451|Q9H611-2|PIF1;ENST00000560444.1_1_15:65114569-65116540:-|nuORF;PIF1|p.T248Kfs*34|1|0.52|ENSG00000140451|chr15:64822340-64822340|G/-|frameshift_variant;PIF1|p.A479Pfs*3|1|0.3|ENSG00000140451|chr15:64819122-64819122|C/-|frameshift_variant;nc|ENSG00000140451|Q9H611-4|PIF1;ENSG00000140451|ENST00000559239|PIF1;nc|ENSG00000140451|Q9H611-3|PIF1	ENST00000560504.1_1_15:65115949-65116540:-|nuORF	ENST00000560504.1_1_15:65115949-65116540:-|nuORF	MSMS	HCT116MG_D190212_S3	3	361.7004699707031	2	361.700838	721.387122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.015	1	16.1	15.6	16.6	0.085424								0	0	0	0.43258	1	5284	5284		46.921	0	1				3765	3664	1934	1957	3687	3687					0.01528421694501958
APGPDPAG	8	Unmodified	_APGPDPAG_					0	0	0			REV__ENST00000310771.8_1_7:99949952-99950487:+|nuORF	REV__ENST00000310771.8_1_7:99949952-99950487:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	681.3213500976562	1	681.320231	680.312954	0.36169	0.00024643	0.069075	4.7062E-05	0.43076	0.00029349	681.320125780048	17.51	1.7211	17.161	15.883	17.604	-0.34933					43	32	2	0	0	0	0.53394	1	5582	5582		38.151	3.9638	1	9502900	+		3766	14830	1935	1958	3688	3688					-0.03998966187668884
APGPDPAG	8	Unmodified	_APGPDPAG_					0	0	0			REV__ENST00000310771.8_1_7:99949952-99950487:+|nuORF	REV__ENST00000310771.8_1_7:99949952-99950487:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	681.320556640625	1	681.320231	680.312954	0.48973	0.00033367	-0.082258	-5.6044E-05	0.40747	0.00027762	681.3201190958385	18.163	2.0736	17.988	16.547	18.621	-0.17501					65	39	2	0	0	0	0.11846	1	5926	5926		90.836	4.7145	1	5053000	+		3767	14830	1935	1958	3689	3689					-0.03998966187668884
APGPPRRRYRK	11	Unmodified	_APGPPRRRYRK_					0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	MSMS	HCT116MG_D190212_S2	2	677.4036254882812	2	677.402361	1352.79017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.358	1	15.031	14.531	15.531	-0.32684								0	0	0	0.94924	1	5097	5097		6.7232	2.1943	1				3768	2129	1936	1959	3690	3690					0.1278859441658824
APGPTSSPGP	10	Unmodified	_APGPTSSPGP_					0	0	0		nc|ENSG00000174521|Q8N6N2-2|TTC9B;ENST00000593586.1_1_19:40723712-40724288:-|nuORF;ENSG00000174521|ENST00000311308|TTC9B	nc|ENSG00000174521|Q8N6N2-2|TTC9B	nc|ENSG00000174521|Q8N6N2-2|TTC9B	MULTI-MSMS	HCT116MG_D190212_S3	3	434.21343994140625	2	434.213975	866.413397	0.036222	1.5728E-05	-0.54547	-0.00023685	-0.50924	-0.00022112	434.21368999918576	16.769	0.41619	16.853	16.6	17.016	0.084467					11	7	2	0	0	0	0.51573	1	5630	5630		34.102	1.797	1	1215400			3769	5335	1937	1960	3691	3691					-0.025153539246616674
APGQERLSEP	10	Unmodified	_APGQERLSEP_					0	0	0			REV__ENST00000469464.1_1_10:1262554-1279682:-|nuORF	REV__ENST00000469464.1_1_10:1262554-1279682:-|nuORF	MSMS	HCT116MG_D190212_S4	4	361.8537292480469	3	361.852489	1082.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.95	1	30.586	30.086	31.086	-0.36416								0	0	0	0.90023	1	11213	11213		9.544	1.0997	1		+		3770	15854	1938	1961	3692	3692					-0.0023293691308481357
APGQGGAPSPP	11	Unmodified	_APGQGGAPSPP_					0	0	0		COL8A2|p.G226S|1|0.19|ENSG00000171812|chr1:36099005-36099005|C/T|missense_variant	COL8A2|p.G226S|1|0.19|ENSG00000171812|chr1:36099005-36099005|C/T|missense_variant	COL8A2|p.G226S|1|0.19|ENSG00000171812|chr1:36099005-36099005|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	468.23223876953125	2	468.232699	934.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.79	1	30.523	30.023	31.023	-0.26704								0	0	0	0.90571	1	11334	11334		19.257	2.3147	1				3771	531	1939	1962	3693	3693					-0.019002626590577165
APGQPLGPV	9	Unmodified	_APGQPLGPV_					0	0	0		ENST00000382172.3_1_13:24460628-24463343:-|nuORF	ENST00000382172.3_1_13:24460628-24463343:-|nuORF	ENST00000382172.3_1_13:24460628-24463343:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	835.4675903320312	1	835.467229	834.459953	0.78227	0.00065356	0.056222	4.6971E-05	0.8385	0.00070054	835.4672885493859	39.91	0.11839	39.53	39.47	39.588	-0.37936					19	12	2	0	0	0	0.050578	1	14625	14625		74.423	14.033	1	11170000			3772	7582	1940	1963	3694	3694					0.03610130697279601
APGRDEPGGPA	11	Unmodified	_APGRDEPGGPA_					0	0	0			REV__TRIP6|p.G87Afs*11|2|0.33|ENSG00000087077|chr7:100868124-100868124|G/-|frameshift_variant	REV__TRIP6|p.G87Afs*11|2|0.33|ENSG00000087077|chr7:100868124-100868124|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2467651367188	2	512.246338	1022.47812	0.43321	0.00022191	-0.11159	-5.7159E-05	0.32163	0.00016475	512.2463234121027	16.864	0.62513	16.864	16.421	17.046	0					15	11	2	0	0	0	0.69749	1	5711	5711		22.736	2.3217	1	2608300	+		3773	10942	1941	1964	3695	3695					-0.032217791186667455
APGSRRWPQ	9	Unmodified	_APGSRRWPQ_					0	0	0		ENST00000474511.1_1_1:16270449-16270866:-|nuORF	ENST00000474511.1_1_1:16270449-16270866:-|nuORF	ENST00000474511.1_1_1:16270449-16270866:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	527.2881469726562	2	527.780682	1053.54681	0.38966	0.00020566	-1.5593	-0.00082299	-1.1697	-0.00061733	527.7796990688298	15.672	0.20855	15.757	15.612	15.821	0.085423					5	3	2	0	0	0	0.24622	1	5095	5095		11.64	0	1	728720			3774	8187	1942	1965	3696	3696					0.022179299716981404
APGTHNQSGP	10	Unmodified	_APGTHNQSGP_					0	0	0			REV__nc|ENSG00000167461|P61006-2|RAB8A	REV__nc|ENSG00000167461|P61006-2|RAB8A	MULTI-MSMS	HCT116MG_D190212_S4	4	483.7274475097656	2	483.225405	964.436257	0.15666	7.5704E-05	0.32145	0.00015533	0.47812	0.00023104	483.225460615383	20.81	1.0388	20.601	20.032	21.071	-0.20959					26	19	2	0	0	0	0.4604	2	7111	7049;7111		37.974	1.847	1	2972800	+		3775	17200	1943	1966	3697;3698	3698					-0.0473833480717758
APGTLMWIIRY	11	Unmodified	_APGTLMWIIRY_					0	0	0		ENST00000581298.5_1_17:46189951-46190729:+|nuORF	ENST00000581298.5_1_17:46189951-46190729:+|nuORF	ENST00000581298.5_1_17:46189951-46190729:+|nuORF	MSMS	HCT116MG_D190212_S2	2	660.5115966796875	2	660.860283	1319.70601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.981	1	47.848	47.348	48.348	-0.13281								0	0	0	0.95023	1	18317	18317		6.2058	0	1				3776	8956	1944	1967	3699	3699					0.05894882484835762
APGVDPFY	8	Unmodified	_APGVDPFY_					0	0	0		ENSG00000179600|ENST00000621500|GPHB5	ENSG00000179600|ENST00000621500|GPHB5	ENSG00000179600|ENST00000621500|GPHB5	MULTI-MSMS	HCT116MG_D190212_S2	2	865.410888671875	1	865.409046	864.401769	0.65447	0.00056638	0.39484	0.0003417	1.0493	0.00090808	865.40945559052	53.336	0.25654	53.147	53.018	53.274	-0.18922					6	4	2	0	0	0	0.76257	1	20545	20545		15.768	1.1865	1	8131500			3777	5563	1945	1968	3700	3700					-0.03585550948002947
APIALESLAI	10	Unmodified	_APIALESLAI_					0	0	0			REV__LRIT2|p.T307I|1|0.26|ENSG00000204033|chr10:84222653-84222653|G/A|missense_variant	REV__LRIT2|p.T307I|1|0.26|ENSG00000204033|chr10:84222653-84222653|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	997.5934448242188	1	997.592824	996.585547	0.55241	0.00055108	-0.033007	-3.2927E-05	0.5194	0.00051815	997.5926561570476	54.722	0.20542	54.533	54.456	54.661	-0.1894					5	3	2	0	0	0	0.54141	1	21104	21104		32.305	0	1	40331000	+		3778	16980	1946	1969	3701	3701					0.08711797762850892
APIALESLAI	10	Unmodified	_APIALESLAI_					0	0	0			REV__LRIT2|p.T307I|1|0.26|ENSG00000204033|chr10:84222653-84222653|G/A|missense_variant	REV__LRIT2|p.T307I|1|0.26|ENSG00000204033|chr10:84222653-84222653|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	997.592824	996.585547	0.55241	0.00055108	-0.033007	-3.2927E-05	0.5194	0.00051815	997.5926561570476	54.722	0.20542	54.533	54.456	54.661	-0.1894	-0.052919	0.00012256	NaN	32.305	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40331000	+		3779	16980	1946	1969							0.08711797762850892
APIALESLAI	10	Unmodified	_APIALESLAI_					0	0	0			REV__LRIT2|p.T307I|1|0.26|ENSG00000204033|chr10:84222653-84222653|G/A|missense_variant	REV__LRIT2|p.T307I|1|0.26|ENSG00000204033|chr10:84222653-84222653|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		1	997.592824	996.585547	0.53395	0.00053267	-0.28494	-0.00028425	0.24901	0.00024841	997.5922509988674	54.931	0.15669	54.639	54.508	54.665	-0.2918	0.052919	-0.00012877	NaN	32.305	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1564700	+		3780	16980	1946	1969							0.08711797762850892
APIFLSSTF	9	Unmodified	_APIFLSSTF_					0	0	0		nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2;AOC2|p.N533Tfs*4|1|0.08|ENSG00000131480|chr17:42849091-42849091|A/-|frameshift_variant;AOC2|p.Q309Pfs*27|1|0.41|ENSG00000131480|chr17:42845549-42845567|TTCAGTTCTCGCCCCAGGG/-|frameshift_variant	nc|ENSG00000131480|O75106-2|AOC2	nc|ENSG00000131480|O75106-2|AOC2	MSMS	HCT116MG_D190212_S1	1	491.7646484375	2	491.765843	981.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.8	1	49.8	49.3	50.3	0								0	0	0	0.76641	1	18985	18985		13.508	0	1				3781	3146	1947	1970	3702	3702					0.025635531829948377
APKAKPHPVPH	11	Unmodified	_APKAKPHPVPH_					0	0	0			REV__ENST00000480549.5_1_1:36789799-36790015:+|nuORF	REV__ENST00000480549.5_1_1:36789799-36790015:+|nuORF	MSMS	HCT116MG_D190212_S2	2	589.8447875976562	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.317	1	51.139	50.639	51.639	-0.17868								0	0	0	0.94538	1	19687	19687		8.7454	0.83525	1		+		3782	15948	1948	1971	3703	3703					0.09028222108076989
APKARLHRLR	10	Unmodified	_APKARLHRLR_					0	0	0			REV__GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	REV__GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	609.3887939453125	2	609.388722	1216.76289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.16	1	50.848	50.348	51.348	-0.31166								0	0	0	0.94107	1	19310	19310		6.7232	3.1267	1		+		3783	16844	1949	1972	3704	3704					0.1631811087618189
APKARLHRLR	10	Unmodified	_APKARLHRLR_					0	0	0			REV__GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	REV__GAS6|p.N106Kfs*13|1|0.39|ENSG00000183087|chr13:113846552-113846553|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	609.3466186523438	2	609.388722	1216.76289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.842	1	51.533	51.033	52.033	-0.30927								0	0	0	0.95351	1	19583	19583		3.9444	0.3479	1		+		3784	16844	1949	1972	3705	3705					0.1631811087618189
APKAYLHTKDW	11	Unmodified	_APKAYLHTKDW_					0	0	0			REV__ENST00000540725.5_1_11:62622615-62622948:-|nuORF	REV__ENST00000540725.5_1_11:62622615-62622948:-|nuORF	MSMS	HCT116MG_D190212_S2	2	665.3521728515625	2	665.351137	1328.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.394	1	15.067	14.567	15.567	-0.32684								0	0	0	0.95113	1	5111	5111		5.7319	2.4505	1		+		3785	16363	1950	1973	3706	3706					0.03652463834418995
APKGLWSQNQL	11	Unmodified	_APKGLWSQNQL_					0	0	0		ENSG00000011590|ENST00000392197|ZBTB32;ZBTB32|p.Q323Rfs*94|1|0.19|ENSG00000011590|chr19:35715946-35715946|C/-|frameshift_variant	ENSG00000011590|ENST00000392197|ZBTB32	ENSG00000011590|ENST00000392197|ZBTB32	MSMS	HCT116MG_D190212_S1	1	621.31201171875	2	621.335487	1240.65642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.426	1	24.426	23.926	24.926	0								0	0	0	0.9387	1	8744	8744		12.241	0.74595	1				3786	899	1951	1974	3707	3707					0.04571890800366418
APKHLWFFK	9	Unmodified	_APKHLWFFK_					0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	MSMS	HCT116MG_D190212_S3	3	586.84619140625	2	587.332019	1172.64948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.787	1	50.474	49.974	50.974	-0.31381								0	0	0	0.76818	1	19160	19160		7.2892	0.56607	1		+		3787	13796	1952	1975	3708	3708					0.07006622710446209
APKHRPYLKK	10	Unmodified	_APKHRPYLKK_					0	0	0			REV__ENST00000562232.1_1_16:2619049-2619172:-|nuORF	REV__ENST00000562232.1_1_16:2619049-2619172:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	619.38037109375	2	619.380032	1236.74551	0.32082	0.00019871	0.049265	3.0514E-05	0.37008	0.00022922	619.3799899087263	49.241	0.45549	49.087	48.935	49.39	-0.15405					17	8	3	0	0	0	0.85662	1	18850	18850		7.2892	7.2892	1	165390000	+		3788	16498	1953	1976	3709	3709					0.13660770550518464
APKKAQRG	8	Unmodified	_APKKAQRG_					0	0	0		ENST00000609015.5_2_3:193767133-193776214:-|nuORF	ENST00000609015.5_2_3:193767133-193776214:-|nuORF	ENST00000609015.5_2_3:193767133-193776214:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	855.515869140625	1	855.515911	854.508634	0.63737	0.00054528	0.55529	0.00047506	1.1927	0.0010203	855.5163694588135	49.215	0.4554	49.061	48.884	49.339	-0.15405					10	8	2	0	0	0	0.78216	1	18858	18858		13.508	2.3934	1	50999000			3789	9131	1954	1977	3710	3710					0.0755604405703707
APKKASHRI	9	Unmodified	_APKKASHRI_					0	0	0		ANKRD11|p.N452Ifs*3|1|0.39|ENSG00000167522|chr16:89285187-89285187|T/-|frameshift_variant;ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant;ANKRD11|p.E1199Rfs*119|1|0.34|ENSG00000167522|chr16:89282948-89282948|T/-|frameshift_variant;ANKRD11|p.D1104Mfs*214|1|0.28|ENSG00000167522|chr16:89283233-89283233|T/-|frameshift_variant;ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ANKRD11|p.N452Ifs*3|1|0.39|ENSG00000167522|chr16:89285187-89285187|T/-|frameshift_variant	ANKRD11|p.N452Ifs*3|1|0.39|ENSG00000167522|chr16:89285187-89285187|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	504.00640869140625	2	504.309075	1006.6036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.911	1	49.595	49.095	50.095	-0.31525								0	0	0	0.76694	1	18807	18807		11.64	3.7301	1				3790	133	1955	1978	3711	3711					0.10055977528224957
APKKIKANRRS	11	Unmodified	_APKKIKANRRS_					0	0	0		nc|ENSG00000155307|Q9NSI8-2|SAMSN1;ENSG00000155307|ENST00000400566|SAMSN1;nc|ENSG00000155307|Q9NSI8-3|SAMSN1	nc|ENSG00000155307|Q9NSI8-2|SAMSN1	nc|ENSG00000155307|Q9NSI8-2|SAMSN1	MSMS	HCT116MG_D190212_S3	3	634.8980102539062	2	634.89912	1267.78369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.114	1	49.799	49.299	50.299	-0.31525								0	0	0	0.95113	1	18889	18889		5.7319	2.4505	1				3791	4248	1956	1979	3712	3712					0.1605065646519961
APKKKHQRN	9	Unmodified	_APKKKHQRN_					0	0	0		RAX2|p.R28Q|1|0.43|ENSG00000173976|chr19:3771660-3771660|C/T|missense_variant	RAX2|p.R28Q|1|0.43|ENSG00000173976|chr19:3771660-3771660|C/T|missense_variant	RAX2|p.R28Q|1|0.43|ENSG00000173976|chr19:3771660-3771660|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	553.8289184570312	2	553.830706	1105.64686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.824	1	50.469	49.969	50.969	-0.35483								0	0	0	0.76913	1	18896	18896		3.9444	0.3479	1				3792	9804	1957	1980	3713	3713					0.09826167305527633
APKKKIQTTL	10	Unmodified	_APKKKIQTTL_					0	0	0		MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	564.3601684570312	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.995	1	47.862	47.362	48.362	-0.13281								0	0	0	0.92607	1	18323	18323		10.074	3.8681	1				3793	1156	1958	1981	3714	3714					0.14910839845219925
APKKKIQTTL	10	Unmodified	_APKKKIQTTL_					0	0	0		MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant;MCM10|p.N701Tfs*35|2|0.27|ENSG00000065328|chr10:13197741-13197741|A/-|frameshift_variant;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MCM10|p.R719Gfs*17|1|0.35|ENSG00000065328|chr10:13198715-13198715|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	564.3585815429688	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.844	1	49.529	49.029	50.029	-0.31525								0	0	0	0.94107	1	18780	18780		6.7232	0.99131	1				3794	1156	1958	1981	3715	3715					0.14910839845219925
APKKKMDLE	9	Unmodified	_APKKKMDLE_					0	0	0		IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant;IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant;ENSG00000163395|ENST00000335211|IGFN1;nc|ENSG00000163395|Q86VF2-4|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1	IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant	IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	530.396728515625	2	530.296985	1058.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.958	1	47.825	47.325	48.325	-0.13281								0	0	0	0.76694	1	18307	18307		11.64	0.81637	1				3795	4597	1959	1982	3716	3716					0.052469562596797914
APKKKVTADSE	11	Unmodified	_APKKKVTADSE_					0	0	0			REV__nc|ENSG00000065534|Q15746-9|MYLK	REV__nc|ENSG00000065534|Q15746-9|MYLK	MSMS	HCT116MG_D190212_S2	2	587.4850463867188	2	587.327328	1172.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.893	1	47.76	47.26	48.26	-0.13281								0	0	0	0.94538	1	18281	18281		8.7454	2.0222	1		+		3796	10703	1960	1983	3717	3717					0.060687648435987285
APKKNRLRRK	10	Unmodified	_APKKNRLRRK_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1;BRCA1|p.K739Ifs*15|1|0.31|ENSG00000012048|chr17:43093315-43093316|-/TA|frameshift_variant	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MSMS	HCT116MG_D190212_S2	2	633.7177734375	2	633.915104	1265.81566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.887	1	34.728	34.228	35.228	-0.15834								0	0	0	0.96377	1	12995	12995		1.6526	0.17072	1				3797	903	1961	1984	3718	3718					0.19338068939009645
APKKVKKGPDD	11	Unmodified	_APKKVKKGPDD_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MSMS	HCT116MG_D190212_S3	3	591.7601318359375	2	591.845687	1181.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.588	1	50.275	49.775	50.775	-0.31381								0	0	0	0.94538	1	19080	19080		8.7454	0.58988	1		+		3798	10648	1962	1985	3719	3719					0.0932506146018568
APKLNRFYI	9	Unmodified	_APKLNRFYI_					0	0	0			REV__ENST00000278826.10_1_11:61129545-61131733:+|nuORF	REV__ENST00000278826.10_1_11:61129545-61131733:+|nuORF	MSMS	HCT116MG_D190212_S2	2	561.2626953125	2	561.326934	1120.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.067	1	49.903	49.403	50.403	-0.16369								0	0	0	0.76694	1	19180	19180		11.64	0.81637	1		+		3799	14712	1963	1986	3720	3720					0.08382014985227215
APKLPPDGAGP	11	Unmodified	_APKLPPDGAGP_					0	0	0			REV__ENST00000263033.9_1_X:99957056-99987090:-|nuORF	REV__ENST00000263033.9_1_X:99957056-99987090:-|nuORF	MSMS	HCT116MG_D190212_S1	1	510.2815246582031	2	510.279649	1018.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.792	1	23.792	23.292	24.292	0								0	0	0	0.92235	1	8489	8489		17.113	3.2068	1		+		3800	14645	1964	1987	3721	3721					0.03621456443227089
APKPSGQRR	9	Unmodified	_APKPSGQRR_					0	0	0			REV__ENST00000436944.5_1_7:73101164-73117856:+|nuORF	REV__ENST00000436944.5_1_7:73101164-73117856:+|nuORF	MSMS	HCT116MG_D190212_S2	2	498.789794921875	2	498.788507	995.562461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.112	1	50.933	50.433	51.433	-0.17868								0	0	0	0.74436	1	19603	19603		16.942	1.0951	1		+		3801	15630	1965	1988	3722	3722					0.06450216488758542
APKRCSEWL	9	Unmodified	_APKRCSEWL_					0	0	0			REV__ENSG00000147027|ENST00000275954|TMEM47	REV__ENSG00000147027|ENST00000275954|TMEM47	MSMS	HCT116MG_D190212_S1	1	545.2813110351562	2	545.279126	1088.5437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.454	1	14.454	13.954	14.954	0								0	0	0	0.76781	1	4732	4732		8.5933	0.68312	1		+		3802	12502	1966	1989	3723	3723					0.0029691880267819215
APKRKVVT	8	Unmodified	_APKRKVVT_					0	0	0			REV__ENST00000465224.5_1_2:97490916-97493694:+|nuORF	REV__ENST00000465224.5_1_2:97490916-97493694:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	898.5810546875	1	898.583262	897.575986	1.0591	0.0009517	2.2141	0.0019896	3.2733	0.0029413	898.5807680490976	60.357	2.0609	60.202	59.291	61.352	-0.15441					123	40	4	0	0	0	0.84759	1	23621	23621		5.7604	1.0044	1	18408000	+		3803	9986	1967	1990	3724	3724					0.12310074267998061
APKRRSKKKL	10	Unmodified	_APKRRSKKKL_					0	0	0			REV__ENSG00000111432|ENST00000229030|FZD10	REV__ENSG00000111432|ENST00000229030|FZD10	MSMS	HCT116MG_D190212_S3	3	606.405517578125	2	606.406581	1210.79861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.561	1	52.255	51.755	52.755	-0.30639								0	0	0	0.95351	1	19873	19873		3.9444	0.66309	1		+		3804	11428	1968	1991	3725	3725					0.201641483332196
APKRRSKKKL	10	Unmodified	_APKRRSKKKL_					0	0	0			REV__ENSG00000111432|ENST00000229030|FZD10	REV__ENSG00000111432|ENST00000229030|FZD10	MSMS	HCT116MG_D190212_S3	3	606.4061279296875	2	606.406581	1210.79861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.255	1	52.952	52.452	53.452	-0.30305								0	0	0	0.95351	1	20152	20152		3.9444	0.66309	1		+		3805	11428	1968	1991	3726	3726					0.201641483332196
APKRVRKKS	9	Unmodified	_APKRVRKKS_					0	0	0		ENST00000586178.5_1_17:49296359-49302518:-|nuORF	ENST00000586178.5_1_17:49296359-49302518:-|nuORF	ENST00000586178.5_1_17:49296359-49302518:-|nuORF	MSMS	HCT116MG_D190212_S3	3	357.23577880859375	3	357.236608	1068.688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.729	1	61.491	60.991	61.991	-0.2387								0	0	0	0.77019	1	23566	23566		0.23584	0.23584	1				3806	8991	1969	1992	3727	3727					0.1563992834499004
APKRYRILL	9	Unmodified	_APKRYRILL_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MSMS	HCT116MG_D190212_S3	3	565.623291015625	2	565.36385	1128.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.98	1	52.675	52.175	53.175	-0.30423								0	0	0	0.76967	1	20041	20041		2.0598	0.21551	1				3807	1224	1970	1993	3728	3728					0.15393983147555446
APKSRIIALA	10	Unmodified	_APKSRIIALA_					0	0	0			REV__ENSG00000269964|ENST00000684080|MEI4	REV__ENSG00000269964|ENST00000684080|MEI4	MSMS	HCT116MG_D190212_S3	3	520.3327026367188	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.569	1	50.255	49.755	50.755	-0.31381								0	0	0	0.93854	1	19073	19073		7.2892	0.56607	1		+		3808	14438	1971	1994	3729	3729					0.13718301502285613
APKWIKMFVL	10	Unmodified	_APKWIKMFVL_					0	0	0		ENST00000465792.1_1_3:186503888-186504086:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	616.8639526367188	2	616.864837	1231.71512	0.59009	0.000364	-1.4266	-0.00088	-0.83648	-0.00051599	616.8637584527514	15.04	0.15626	15.04	14.962	15.118	0					4	2	2	0	0	0	0.87801	1	4996	4996		3.9444	0.3479	1	2670600			3809	8098	1972	1995	3730	3730					0.1085327584114566
APKWRTIRPL	10	Unmodified	_APKWRTIRPL_					0	0	0			REV__TNFRSF13B|p.D191Ifs*30|1|0.38|ENSG00000240505|chr17:16940386-16940386|C/-|frameshift_variant	REV__TNFRSF13B|p.D191Ifs*30|1|0.38|ENSG00000240505|chr17:16940386-16940386|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	620.2477416992188	2	619.380032	1236.74551	0.28271	0.00017511	-0.17223	-0.00010667	0.11048	6.8432E-05	619.3799143887376	49.579	0.26167	49.263	49.079	49.341	-0.31596					6	4	2	0	0	0	0.78781	1	18659	18659		13.042	3.6593	1	8973000	+		3810	17651	1973	1996	3731	3731					0.136607705505412
APLAPPLVQR	10	Unmodified	_APLAPPLVQR_					0	0	0			REV__ENST00000461241.1_1_22:31518992-31523076:+|nuORF	REV__ENST00000461241.1_1_22:31518992-31523076:+|nuORF	MSMS	HCT116MG_D190212_S1	1	531.324951171875	2	531.326934	1060.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.579	1	49.579	49.079	50.079	0								0	0	0	0.94107	1	18895	18895		6.7232	0	1		+		3811	15781	1974	1997	3732	3732					0.1114201498521652
APLEALLREPV	11	Unmodified	_APLEALLREPV_					0	0	0			REV__ENSG00000188937|ENST00000378220|NYX	REV__ENSG00000188937|ENST00000378220|NYX	MSMS	HCT116MG_D190212_S2	2	604.3538208007812	2	604.355888	1206.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.825	1	41.756	41.256	42.256	-0.068199								0	0	0	0.95196	1	15815	15815		5.2969	1.7004	1		+		3812	13981	1975	1998	3733	3733					0.10214232119983535
APLELVSSVM	10	Unmodified	_APLELVSSVM_					0	0	0			REV__ENSG00000170191|ENST00000304788|NANP	REV__ENSG00000170191|ENST00000304788|NANP	MSMS	HCT116MG_D190212_S3	3	522.7998657226562	2	523.283543	1044.55253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.667	1	31.397	30.897	31.897	-0.27028								0	0	0	0.92272	1	11578	11578		10.824	0.75	1		+		3813	13282	1976	1999	3734	3734					0.03203847648478586
APLERTYLP	9	Unmodified	_APLERTYLP_					0	0	0		ENST00000380152.7_1_13:32889759-32890588:+|nuORF	ENST00000380152.7_1_13:32889759-32890588:+|nuORF	ENST00000380152.7_1_13:32889759-32890588:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2955322265625	2	530.295299	1058.57605	0.57856	0.00030681	-0.15508	-8.2237E-05	0.42348	0.00022457	530.2951338075873	29.306	0.83335	29.084	28.525	29.359	-0.22195					40	15	4	0	0	0	0.24895	1	10542	10542		36.127	0.082828	1	48630000			3814	7561	1977	2000	3735	3735					0.04910029477309763
APLHRPCWAS	10	Unmodified	_APLHRPCWAS_					0	0	0		ENST00000570217.1_1_16:89984311-89984464:+|nuORF	ENST00000570217.1_1_16:89984311-89984464:+|nuORF	ENST00000570217.1_1_16:89984311-89984464:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	569.285888671875	2	569.284743	1136.55493	0.21671	0.00012337	1.9321	0.0010999	2.1489	0.0012233	569.2858119055438	17.515	0.31151	17.345	17.225	17.536	-0.17047					7	5	2	0	0	0	0.77749	1	5830	5830		13.906	0.29118	1	2773400			3815	8887	1978	2001	3736	3736					-0.007882591031830088
APLHRSRRR	9	Unmodified	_APLHRSRRR_					0	0	0			REV__ZNF831|p.P1322L|1|0.39|ENSG00000124203|chr20:59206994-59206994|C/T|missense_variant	REV__ZNF831|p.P1322L|1|0.39|ENSG00000124203|chr20:59206994-59206994|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	574.8489379882812	2	574.847222	1147.67989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.511	1	34.336	33.836	34.836	-0.17512								0	0	0	0.76818	1	12842	12842		7.2892	1.0834	1		+		3816	18090	1979	2002	3737	3737					0.1119579414821601
APLRPPPFPTR	11	Unmodified	_APLRPPPFPTR_					0	0	0			REV__VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	REV__VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	624.806640625	2	624.864215	1247.71388	0.72522	0.00045317	-1.3715	-0.000857	-0.64628	-0.00040384	624.8635054507796	52.251	0.20721	52.064	51.935	52.142	-0.18725					8	3	3	0	0	0	0.74191	1	20017	20017		3.5965	0	1	36158000	+		3817	14194	1980	2003	3738	3738					0.09992777796583141
APLTVRHGLAS	11	Unmodified	_APLTVRHGLAS_					0	0	0		RASL12|p.A212V|1|0.28|ENSG00000103710|chr15:65055065-65055065|G/A|missense_variant	RASL12|p.A212V|1|0.28|ENSG00000103710|chr15:65055065-65055065|G/A|missense_variant	RASL12|p.A212V|1|0.28|ENSG00000103710|chr15:65055065-65055065|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	561.32421875	2	561.324922	1120.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.304	1	34.129	33.629	34.629	-0.17512								0	0	0	0.93717	1	12758	12758		13.042	0.80181	1				3818	9803	1981	2004	3739	3739					0.07979925491508766
APNPALPD	8	Unmodified	_APNPALPD_					0	0	0			REV__nc|ENSG00000058085|Q13753-2|LAMC2	REV__nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	HCT116MG_D190212_S2	2	794.4054565429688	1	794.404295	793.397018	0.83774	0.0006655	0.11495	9.1318E-05	0.95269	0.00075682	794.4043406405831	32.615	0.3128	32.404	32.221	32.534	-0.21135					7	5	2	0	0	0	0.53394	1	12083	12083		38.151	2.107	1	20176000	+		3819	10660	1982	2005	3740	3740					-0.0079443509076782
APNQRFHQ	8	Unmodified	_APNQRFHQ_					0	0	0			REV__nc|ENSG00000171016|Q9Y3Y4|PYGO1	REV__nc|ENSG00000171016|Q9Y3Y4|PYGO1	MSMS	HCT116MG_D190212_S3	3	499.2516784667969	2	499.251757	996.488962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.838	1	17.919	17.419	18.419	0.081358								0	0	0	0.8396	1	6020	6020		19.439	3.5918	1		+		3820	13327	1983	2006	3741	3741					-0.009423319537290809
APPASWRP	8	Unmodified	_APPASWRP_					0	0	0		ENST00000423473.6_1_17:20898860-20901274:+|nuORF	ENST00000423473.6_1_17:20898860-20901274:+|nuORF	ENST00000423473.6_1_17:20898860-20901274:+|nuORF	MSMS	HCT116MG_D190212_S3	3	440.7530822753906	2	441.235045	880.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.95	1	24.853	24.353	25.353	-0.097134								0	0	0	0.80194	1	8885	8885		22.453	0	1				3821	7801	1984	2007	3742	3742					0.010526662743814086
APPGFGKA	8	Unmodified	_APPGFGKA_					0	0	0			REV__nc|ENSG00000173482|P28827|PTPRM	REV__nc|ENSG00000173482|P28827|PTPRM	MULTI-MSMS	HCT116MG_D190212_S2	2	372.7053527832031	2	372.705589	743.396624	-0.22359	-8.3332E-05	-0.2136	-7.961E-05	-0.43719	-0.00016294	372.7054669309948	21.06	0.26056	20.677	20.546	20.807	-0.38288					8	4	2	0	0	0	0.73076	1	7397	7397		19.439	4.8573	1	11025000	+		3822	13440	1985	2008	3743	3743					0.01466189980044419
APPQAPRGV	9	Unmodified	_APPQAPRGV_					0	0	0			REV__ENST00000517894.5_3_8:143530803-143545560:+|nuORF	REV__ENST00000517894.5_3_8:143530803-143545560:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	446.75323486328125	2	446.753601	891.49265	0.12714	5.6798E-05	-0.20235	-9.0401E-05	-0.075215	-3.3603E-05	446.7533925305377	24.659	0.31243	24.575	24.445	24.757	-0.083694					7	5	2	0	0	0	0.43775	1	8793	8793		20.454	2.3186	1	2637600	+		3823	16218	1986	2009	3744	3744					0.042563378201293744
APPQAPRGV	9	Unmodified	_APPQAPRGV_					0	0	0			REV__ENST00000517894.5_3_8:143530803-143545560:+|nuORF	REV__ENST00000517894.5_3_8:143530803-143545560:+|nuORF	MSMS	HCT116MG_D190212_S4	4	446.7540588378906	2	446.753601	891.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.96	1	24.689	24.189	25.189	-0.27136								0	0	0	0.67173	1	8821	8821		20.454	2.3186	1		+		3824	16218	1986	2009	3745	3745					0.042563378201293744
APPQAPRGV	9	Unmodified	_APPQAPRGV_					0	0	0			REV__ENST00000517894.5_3_8:143530803-143545560:+|nuORF	REV__ENST00000517894.5_3_8:143530803-143545560:+|nuORF	MSMS	HCT116MG_D190212_S4	4	446.75390625	2	446.753601	891.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.539	1	25.259	24.759	25.759	-0.27958								0	0	0	0.76575	1	9055	9055		15.847	2.3393	1		+		3825	16218	1986	2009	3746	3746					0.042563378201293744
APPQPEYFYQP	11	Unmodified	_APPQPEYFYQP_					0	0	0		ENSG00000165923|ENST00000525123|AGBL2;ENST00000529712.5_1_11:47690447-47736202:-|nuORF	ENSG00000165923|ENST00000525123|AGBL2	ENSG00000165923|ENST00000525123|AGBL2	MSMS	HCT116MG_D190212_S1	1	668.8123779296875	2	668.814053	1335.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.363	1	47.363	46.863	47.863	0								0	0	0	0.95023	1	17994	17994		6.2058	0.47393	1				3826	4811	1987	2010	3747	3747					-0.040829240477251005
APPRGRRKK	9	Unmodified	_APPRGRRKK_					0	0	0			REV__nc|ENSG00000080503|P51531-2|SMARCA2	REV__nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	HCT116MG_D190212_S3	3	533.3409423828125	2	533.341241	1064.66793	0.60994	0.00032531	-1.5194	-0.00081037	-0.90947	-0.00048506	533.3403253709258	52.894	0.36553	52.587	52.404	52.77	-0.30639					8	6	2	0	0	0	0.74258	1	20040	20040		2.3027	0	1	2335800	+		3827	10862	1988	2011	3748	3748					0.13818177405005372
APPRGRRKK	9	Unmodified	_APPRGRRKK_					0	0	0			REV__nc|ENSG00000080503|P51531-2|SMARCA2	REV__nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	533.341241	1064.66793	0.39789	0.00021221	-0.89724	-0.00047853	-0.49934	-0.00026632	533.3406843142562	52.511	0.66919	52.511	52.125	52.794	0	-0.03827	2.9202E-05	NaN	2.3027	40	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1845799999.9999998	+		3828	10862	1988	2011							0.13818177405005372
APQAKPLAQPV	11	Unmodified	_APQAKPLAQPV_					0	0	0			REV__CDH16|p.K563Sfs*22|2|0.25|ENSG00000166589|chr16:66912003-66912003|G/-|frameshift_variant	REV__CDH16|p.K563Sfs*22|2|0.25|ENSG00000166589|chr16:66912003-66912003|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	560.3267211914062	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.268	1	34.093	33.593	34.593	-0.17512								0	0	0	0.93717	1	12744	12744		13.042	3.6593	1		+		3829	10132	1989	2012	3749	3749					0.09021693777026485
APQEGAATA	9	Unmodified	_APQEGAATA_					0	0	0		ENST00000330062.7_1_15:90626866-90627130:-|nuORF	ENST00000330062.7_1_15:90626866-90627130:-|nuORF	ENST00000330062.7_1_15:90626866-90627130:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	408.1983642578125	2	408.198325	814.382096	-0.11586	-4.7294E-05	0.21098	8.6121E-05	0.095119	3.8827E-05	408.19832899765856	17.947	0.93703	18.023	17.789	18.726	0.076334					17	17	2	0	0	0	0.12994	1	6080	6080		52.268	3.9225	1	4560100			3830	7156	1990	2013	3750	3750					-0.032519269587737654
APQEGAATA	9	Unmodified	_APQEGAATA_					0	0	0		ENST00000330062.7_1_15:90626866-90627130:-|nuORF	ENST00000330062.7_1_15:90626866-90627130:-|nuORF	ENST00000330062.7_1_15:90626866-90627130:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	408.198325	814.382096	-0.54058	-0.00022066	0.55964	0.00022845	0.019068	7.7836E-06	408.19844392984453	18.45	0.36591	18.087	17.851	18.217	-0.36325	0.031869	0.00012145	NaN	52.268	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6054100			3831	7156	1990	2013							-0.032519269587737654
APQFAMLKKEV	11	Unmodified	_APQFAMLKKEV_					0	0	0			REV__ENSG00000143811|ENST00000343818|PYCR2	REV__ENSG00000143811|ENST00000343818|PYCR2	MSMS	HCT116MG_D190212_S2	2	631.3544921875	2	631.352291	1260.69003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.935	1	47.802	47.302	48.302	-0.13281								0	0	0	0.94538	1	18298	18298		8.7454	2.5396	1		+		3832	12404	1991	2014	3751	3751					0.0701117624789731
APQGESSTQP	10	Unmodified	_APQGESSTQP_					0	0	0		nc|ENSG00000181322|Q86XW9-3|NME9;nc|ENSG00000181322|Q86XW9-2|NME9	nc|ENSG00000181322|Q86XW9-3|NME9	nc|ENSG00000181322|Q86XW9-3|NME9	MULTI-SECPEP	HCT116MG_D190212_S3	3	500.7445983886719	2	501.230353	1000.44615	0.14735	7.3855E-05	0.80063	0.0004013	0.94797	0.00047515	501.2305654439288	17.388	0.31202	17.469	17.273	17.585	0.081356					7	5	2	0	0	0	0.29442	1	5848	5848		6.2058	2.9245	1	2239300			3833	9568	1992	2015	3752	3752					-0.054051915924674176
APQHPGDGSP	10	Unmodified	_APQHPGDGSP_					0	0	0			REV__ENST00000377264.7_2_11:64669793-64670087:-|nuORF	REV__ENST00000377264.7_2_11:64669793-64670087:-|nuORF	MSMS	HCT116MG_D190212_S4	4	481.71868896484375	2	481.719956	961.425358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.985	1	16.818	16.318	17.318	-0.16664								0	0	0	0.86501	1	5601	5601		20.415	3.3016	1		+		3834	15234	1993	2016	3753	3753					-0.056897371814670805
APQKVERLRLK	11	Unmodified	_APQKVERLRLK_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1	MSMS	HCT116MG_D190212_S4	4	669.420166015625	2	669.422428	1336.8303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.985	1	50.63	50.13	51.13	-0.35483								0	0	0	0.95686	1	18961	18961		2.7352	1.0826	1		+		3835	17087	1994	2017	3754	3754					0.17536096296498727
APQLHKRRTRL	11	Unmodified	_APQLHKRRTRL_					0	0	0			REV__ENST00000599111.5_1_19:48613829-48613991:-|nuORF	REV__ENST00000599111.5_1_19:48613829-48613991:-|nuORF	MSMS	HCT116MG_D190212_S2	2	688.4241943359375	2	688.423294	1374.83203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.742	1	35.599	35.099	36.099	-0.14245								0	0	0	0.95113	1	13343	13343		5.7319	0	1		+		3836	16740	1995	2018	3755	3755					0.1596115010511312
APQPAWEAPQ	10	Unmodified	_APQPAWEAPQ_					0	0	0		ENSG00000254585|ENST00000650528|MAGEL2;MAGEL2|p.Q666Sfs*36|2|0.5|ENSG00000254585|chr15:23645747-23645747|G/-|frameshift_variant	ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	MSMS	HCT116MG_D190212_S4	4	548.0236206054688	2	547.766906	1093.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.279	1	51.934	51.434	52.434	-0.34538								0	0	0	0.91279	1	19484	19484		13.042	1.4022	1				3837	6597	1996	2019	3756	3756					-0.02376018079212372
APRKKRSS	8	Unmodified	_APRKKRSS_					0	0	0			REV__AFF4|p.G167Rfs*27|1|0.31|ENSG00000072364|chr5:132934566-132934567|-/T|frameshift_variant	REV__AFF4|p.G167Rfs*27|1|0.31|ENSG00000072364|chr5:132934566-132934567|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	465.2829284667969	2	465.2856	928.556647	0.25893	0.00012048	-0.13342	-6.208E-05	0.12551	5.8396E-05	465.2854597138626	49.369	1.9354	49.053	48.552	50.488	-0.31596					78	36	4	0	0	0	0.8506	1	18867	18867		5.2307	0.47466	1	362490000	+		3838	9879	1997	2020	3757	3757					0.08951117977085232
APRLQHGAQPP	11	Unmodified	_APRLQHGAQPP_					0	0	0		ENST00000569358.5_1_16:720470-721765:+|nuORF;ENST00000562333.5_1_16:720150-721765:+|nuORF;nc|ENSG00000140983|Q8IXI1-2|RHOT2;ENST00000568636.5_1_16:720150-721765:+|nuORF;ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF;ENST00000602564.5_1_16:719540-721765:+|nuORF	ENST00000569358.5_1_16:720470-721765:+|nuORF	ENST00000569358.5_1_16:720470-721765:+|nuORF	MSMS	HCT116MG_D190212_S2	2	586.31982421875	2	586.320171	1170.62579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.596	1	17.242	16.742	17.742	-0.35393								0	0	0	0.94284	1	5998	5998		10.074	2.465	1				3839	8825	1998	2021	3758	3758					0.047301572059723185
APRMILILP	9	Unmodified	_APRMILILP_					0	0	0		ENST00000368655.4_1_1:153781276-153781465:-|nuORF	ENST00000368655.4_1_1:153781276-153781465:-|nuORF	ENST00000368655.4_1_1:153781276-153781465:-|nuORF	MSMS	HCT116MG_D190212_S3	3	512.3416137695312	2	512.322805	1022.63106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.707	1	50.393	49.893	50.893	-0.31381								0	0	0	0.7676	1	19128	19128		9.3474	4.1168	1				3840	7404	1999	2022	3759	3759					0.12064744744259315
APRMSRSTW	9	Unmodified	_APRMSRSTW_					0	0	0		ENST00000510413.5_2_4:151186798-151186864:-|nuORF	ENST00000510413.5_2_4:151186798-151186864:-|nuORF	ENST00000510413.5_2_4:151186798-151186864:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	545.7732543945312	2	546.274375	1090.5342	0.37809	0.00020654	0.7483	0.00040878	1.1264	0.00061532	546.2746834479718	19.365	0.26015	19.365	19.235	19.495	0					6	4	2	0	0	0	0.26328	1	6733	6733		1.8442	1.8442	1	9142800			3841	8495	2000	2023	3760	3760					-0.007448494828395269
APRPHRRSRHH	11	Unmodified	_APRPHRRSRHH_					0	0	0		ENST00000427455.1_2_7:35734046-35734534:-|nuORF;ENST00000603731.1_2_7:35734046-35735162:-|nuORF;ENST00000396081.5_1_7:35734046-35734373:-|nuORF;ENST00000311350.7_1_7:35734046-35734675:-|nuORF	ENST00000427455.1_2_7:35734046-35734534:-|nuORF	ENST00000427455.1_2_7:35734046-35734534:-|nuORF	MSMS	HCT116MG_D190212_S1	1	703.89111328125	2	703.890484	1405.76641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.57	1	18.57	18.07	19.07	0								0	0	0	0.95925	1	6391	6391		1.4819	0	1				3842	7060	2001	2024	3761	3761					0.07976173702786582
APRRRRWRRRR	11	Unmodified	_APRRRRWRRRR_					0	0	0			REV__ENST00000556735.1_1_14:51134724-51134856:-|nuORF	REV__ENST00000556735.1_1_14:51134724-51134856:-|nuORF	MSMS	HCT116MG_D190212_S1	1	811.5003051757812	2	811.501598	1620.98864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.538	1	38.538	38.038	39.038	0								0	0	0	0.9598	1	14431	14431		1.1933	0	1		+		3843	16467	2002	2025	3762	3762					0.20298872838770876
APSDGYYRGE	10	Unmodified	_APSDGYYRGE_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A;SV2A|p.S127Efs*2|1|0.2|ENSG00000159164|chr1:149913466-149913467|-/C|frameshift_variant;SV2A|p.E138Gfs*16|1|0.03|ENSG00000159164|chr1:149913428-149913429|-/C|frameshift_variant;SV2A|p.E138Rfs*39|4|0.33|ENSG00000159164|chr1:149913429-149913429|C/-|frameshift_variant	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MSMS	HCT116MG_D190212_S4	4	557.7440185546875	2	557.743628	1113.4727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.541	1	15.379	14.879	15.879	-0.16173								0	0	0	0.90892	1	5018	5018		13.906	6.2971	1				3844	4400	2003	2026	3763	3763					-0.07949502701148958
APSEVSPPDLW	11	Unmodified	_APSEVSPPDLW_					0	0	0		USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	599.0218505859375	2	599.292953	1196.57135	0.77792	0.0004662	-0.57076	-0.00034205	0.20716	0.00012415	599.2925736414951	56.261	0.20668	56.078	55.949	56.156	-0.18261					5	3	2	0	0	0	0.32355	1	21714	21714		22.736	5.6234	1	11094000			3845	1012	2004	2027	3764	3764					-0.019068994560939245
APSEVSPPDLW	11	Unmodified	_APSEVSPPDLW_					0	0	0		USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	599.292953	1196.57135	0.69958	0.00041925	-0.76846	-0.00046053	-0.068876	-4.1277E-05	599.7943021591929	56.407	0.1573	56.124	55.993	56.15	-0.28367	0.022862	-0.00013709	NaN	22.736	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	849700			3846	1012	2004	2027							-0.019068994560939245
APSGGPGAPT	10	Unmodified	_APSGGPGAPT_					0	0	0		ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	811.3948364257812	1	811.394458	810.387182	0.87342	0.00070869	-0.20808	-0.00016883	0.66535	0.00053986	811.3943359375485	19.403	0.26056	19.034	18.888	19.148	-0.3695					6	4	2	0	0	0	0.023158	1	6758	6758		114.65	10.901	1	4421300			3847	8949	2005	2028	3765	3765					-0.025596230961355104
APSGGPGAPT	10	Unmodified	_APSGGPGAPT_					0	0	0		ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	811.3946533203125	1	811.394458	810.387182	0.82508	0.00066946	0.043549	3.5335E-05	0.86863	0.0007048	811.3944563836286	20.375	0.58113	19.995	19.813	20.394	-0.37949					20	10	3	0	0	0	0.015316	1	7108	7108		131.27	34.983	1	19124000			3848	8949	2005	2028	3766	3766					-0.025596230961355104
APSGGPGAPT	10	Unmodified	_APSGGPGAPT_					0	0	0		ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	811.39501953125	1	811.394458	810.387182	0.88147	0.00071522	-0.020171	-1.6367E-05	0.8613	0.00069885	811.3943589158075	19.979	0.9374	20.027	19.686	20.624	0.048107					31	17	4	0	0	0	0.0083298	1	6864	6864		158.2	42.511	1	24005000			3849	8949	2005	2028	3767	3767					-0.025596230961355104
APSGGPGAPT	10	Unmodified	_APSGGPGAPT_					0	0	0		ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	811.394775390625	1	811.394458	810.387182	0.86628	0.0007029	0.056116	4.5532E-05	0.9224	0.00074843	811.3945461395629	19.134	0.41583	18.947	18.765	19.181	-0.18674					10	7	2	0	0	0	0.015316	1	6476	6476		131.27	23.271	1	4102900			3850	8949	2005	2028	3768	3768					-0.025596230961355104
APSGGPGAPT	10	Unmodified	_APSGGPGAPT_					0	0	0		ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	811.3956298828125	1	811.394458	810.387182	0.91751	0.00074447	0.13323	0.0001081	1.0507	0.00085257	811.3944469476643	20.151	0.57183	19.952	19.678	20.25	-0.19947					22	10	3	0	0	0	0.010831	1	6850	6850		144.35	48.066	1	17178000			3851	8949	2005	2028	3769	3769					-0.025596230961355104
APSGGPGAPT	10	Unmodified	_APSGGPGAPT_					0	0	0		ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	406.2008056640625	2	406.200867	810.387182	0.12818	5.2065E-05	-0.13698	-5.5643E-05	-0.0088081	-3.5779E-06	406.20079441341727	20.136	0.57184	19.939	19.733	20.304	-0.19729					12	10	2	0	0	0	0.20843	1	6909	6909		58.679	6.4105	1	1418600			3852	8949	2005	2028	3770	3770					-0.025596230961355104
APSGGPGAPT	10	Unmodified	_APSGGPGAPT_					0	0	0		ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MSMS	HCT116MG_D190212_S4	4	406.20062255859375	2	406.200867	810.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.21	1	19.023	18.523	19.523	-0.18674								0	0	0	0.31833	1	6500	6500		58.679	3.9053	1				3853	8949	2005	2028	3771	3771					-0.025596230961355104
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S1	1	550.2176513671875	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7147	1	6.7147	6.2147	7.2147	0								0	0	0	0.96208	1	2023	2023		0	0	0				3854	9615	2006	2029	3772	3772					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.2175903320312	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.041332	1	0.037393	-0.46261	0.53739	-0.0039395								0	0	0	0.96208	1	16	16		0	0	0				3855	9615	2006	2029	3773	3773					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.2175903320312	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1605	1	3.1202	2.6202	3.6202	-0.040353								0	0	0	0.96208	1	1010	1010		0	0	0				3856	9615	2006	2029	3774	3774					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.2175903320312	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.677	1	3.6149	3.1149	4.1149	-0.062129								0	0	0	0.96208	1	1165	1165		0	0	0				3857	9615	2006	2029	3775	3775					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.2176513671875	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.1904	1	4.1013	3.6013	4.6013	-0.089082								0	0	0	0.96208	1	1325	1325		0	0	0				3858	9615	2006	2029	3776	3776					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.2175903320312	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7583	1	5.6101	5.1101	6.1101	-0.14816								0	0	0	0.96208	1	1823	1823		0	0	0				3859	9615	2006	2029	3777	3777					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.217529296875	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.345	1	10.08	9.5798	10.58	-0.26472								0	0	0	0.96208	1	3267	3267		0	0	0				3860	9615	2006	2029	3778	3778					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.2175903320312	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.977	1	12.679	12.179	13.179	-0.29721								0	0	0	0.96208	1	4247	4247		0	0	0				3861	9615	2006	2029	3779	3779					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S3	3	550.2176513671875	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.041221	1	0.10213	-0.39787	0.60213	0.060905								0	0	0	0.96208	1	16	16		0	0	0				3862	9615	2006	2029	3780	3780					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S3	3	550.2176513671875	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7268	1	8.7474	8.2474	9.2474	0.020599								0	0	0	0.96208	1	2634	2634		0	0	0				3863	9615	2006	2029	3781	3781					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S4	4	550.2174682617188	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.038812	1	-0.22575	-0.72575	0.27425	-0.26456								0	0	0	0.96208	1	15	15		0	0	0				3864	9615	2006	2029	3782	3782					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S4	4	550.217529296875	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6365	1	3.3719	2.8719	3.8719	-0.26456								0	0	0	0.96208	1	1110	1110		0	0	0				3865	9615	2006	2029	3783	3783					-0.12441489949969764
APSISGSSURS	11	Unmodified	_APSISGSSURS_					0	0	0		nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S4	4	550.2174682617188	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.1486	1	3.8841	3.3841	4.3841	-0.26456								0	0	0	0.96208	1	1266	1266		0	0	0				3866	9615	2006	2029	3784	3784					-0.12441489949969764
APSKKMWIKLR	11	Unmodified	_APSKKMWIKLR_					0	0	0		ENSG00000123360|ENST00000243052|PDE1B	ENSG00000123360|ENST00000243052|PDE1B	ENSG00000123360|ENST00000243052|PDE1B	MSMS	HCT116MG_D190212_S2	2	679.4092407226562	2	679.410475	1356.8064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.112	1	32.901	32.401	33.401	-0.21135								0	0	0	0.95023	1	12275	12275		6.2058	4.5532	1				3867	2799	2007	2030	3785	3785					0.14226539538458383
APSKKMWIKLR	11	Unmodified	_APSKKMWIKLR_					0	0	0		ENSG00000123360|ENST00000243052|PDE1B	ENSG00000123360|ENST00000243052|PDE1B	ENSG00000123360|ENST00000243052|PDE1B	MSMS	HCT116MG_D190212_S3	3	679.411865234375	2	679.410475	1356.8064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.136	1	43.829	43.329	44.329	-0.30759								0	0	0	0.95023	1	16490	16490		6.2058	2.9245	1				3868	2799	2007	2030	3786	3786					0.14226539538458383
APSLLLVL	8	Unmodified	_APSLLLVL_					0	0	0		nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	nc|ENSG00000168781|Q6PFW1-7|PPIP5K1	nc|ENSG00000168781|Q6PFW1-7|PPIP5K1	MSMS	HCT116MG_D190212_S1	1	413.2757873535156	2	413.275847	824.537141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.525	1	14.525	14.025	15.025	0								0	0	0	0.8837	1	4760	4760		6.3541	0	1				3869	5030	2008	2031	3787	3787					0.11785348913599591
APSQPQASQ	9	Unmodified	_APSQPQASQ_					0	0	0		POU6F1|p.Q244Rfs*3|1|0.4|ENSG00000184271|chr12:51190423-51190423|G/-|frameshift_variant;ENSG00000184271|ENST00000333640|POU6F1	POU6F1|p.Q244Rfs*3|1|0.4|ENSG00000184271|chr12:51190423-51190423|G/-|frameshift_variant	POU6F1|p.Q244Rfs*3|1|0.4|ENSG00000184271|chr12:51190423-51190423|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	457.2221374511719	2	457.222331	912.430109	0.33814	0.0001546	-0.23548	-0.00010767	0.10265	4.6935E-05	457.2223044700713	17.489	0.26082	17.489	17.359	17.62	0					7	4	2	0	0	0	0.24895	1	6003	6003		36.127	1.7253	1	5998000			3870	5763	2009	2032	3788	3788					-0.0296085303871223
APSQPSYSEQP	11	Unmodified	_APSQPSYSEQP_					0	0	0		ENSG00000268350|ENST00000622447|FAM156A;ENSG00000179304|ENST00000416841|FAM156B	ENSG00000268350|ENST00000622447|FAM156A	ENSG00000268350|ENST00000622447|FAM156A	MULTI-SECPEP	HCT116MG_D190212_S3	3	596.3040161132812	2	595.769842	1189.52513	0.4502	0.00026822	-0.30566	-0.0001821	0.14454	8.6115E-05	595.7695826684155	21.07	0.20817	21.105	20.975	21.183	0.034473					5	3	2	0	0	0	0.36231	1	7336	7336		5.2969	1.7004	1	3210200			3871	5548	2010	2033	3789	3789					-0.06204964358175857
APSTRPRSRK	10	Unmodified	_APSTRPRSRK_					0	0	0			REV__SRRM2|p.S1854P|1|0.28|ENSG00000167978|chr16:2766088-2766088|T/C|missense_variant	REV__SRRM2|p.S1854P|1|0.28|ENSG00000167978|chr16:2766088-2766088|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	578.3382568359375	2	578.338895	1154.66324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.651	1	31.651	31.151	32.151	0								0	0	0	0.94107	1	11653	11653		6.7232	0.99131	1		+		3872	17592	2011	2034	3790	3790					0.09209248471574938
APSVAAPAAP	10	Unmodified	_APSVAAPAAP_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MSMS	HCT116MG_D190212_S2	2	426.23345947265625	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.726	1	22.341	21.841	22.841	-0.3852								0	0	0	0.92272	1	8065	8065		10.824	0	1		+		3873	12835	2012	2035	3791	3791					0.023658268346480327
APSYGAAG	8	Unmodified	_APSYGAAG_					0	0	0		JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant;ENSG00000177606|ENST00000371222|JUN	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	JUN|p.R257Kfs*53|1|0.31|ENSG00000177606|chr1:58782301-58782302|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	693.3203735351562	1	693.320231	692.312954	0.92781	0.00064327	-0.51042	-0.00035388	0.41739	0.00028938	693.3197595166149	26.994	1.2504	26.825	25.765	27.016	-0.16933					30	23	2	0	0	0	0.40466	1	9414	9414		49.669	11.518	1	4030500			3874	5465	2013	2036	3792	3792					-0.045509661876621976
APTCHHWRPES	11	Unmodified	_APTCHHWRPES_					0	0	0			REV__AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|3|1|sense	REV__AluSc_dup13832|chr7:33006087-33006413:-|3.3176111198493|0.4159080058002372|3.0|482.0|3|1|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	662.2943725585938	2	660.798746	1319.58294	0.47096	0.00031121	-1.3657	-0.00090245	-0.89474	-0.00059125	661.2997627157644	16.734	0.26035	16.392	16.204	16.464	-0.34183					15	4	5	0	0	0	0.74191	1	5603	5603		5.7319	1.4026	1	3643300	+		3875	9922	2014	2037	3793	3793					-0.0640698091374361
APTDSTHSP	9	Unmodified	_APTDSTHSP_					0	0	0			REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	456.7063903808594	2	456.706514	911.398475	-0.14457	-6.6025E-05	1.0074	0.00046009	0.86283	0.00039406	456.70696679857025	17.449	0.72474	17.279	16.76	17.484	-0.17047					16	13	2	0	0	0	0.39063	1	5831	5831		23.148	2.6948	1	1785100	+		3876	9878	2015	2038	3794	3794					-0.060768457926542396
APTFIKEVRAP	11	Unmodified	_APTFIKEVRAP_					0	0	0			REV__TMEM165|p.G171Wfs*3|1|0.09|ENSG00000134851|chr4:55417143-55417144|-/T|frameshift_variant	REV__TMEM165|p.G171Wfs*3|1|0.09|ENSG00000134851|chr4:55417143-55417144|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	614.8541870117188	2	614.856055	1227.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.217	1	15.217	14.717	15.717	0								0	0	0	0.94924	1	5039	5039		6.7232	3.1267	1		+		3877	12071	2016	2039	3795	3795					0.09281651839864935
APTKTWRRWHR	11	Unmodified	_APTKTWRRWHR_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	HCT116MG_D190212_S3	3	747.9133911132812	2	747.913093	1493.81163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.931	1	42.626	42.126	43.126	-0.30472								0	0	0	0.95954	1	16008	16008		1.3295	0.13619	1				3878	5331	2017	2040	3796	3796					0.08447979445304554
APTKTWRRWHR	11	Unmodified	_APTKTWRRWHR_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	HCT116MG_D190212_S3	3	747.95947265625	2	747.913093	1493.81163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.617	1	50.303	49.803	50.803	-0.31381								0	0	0	0.95925	1	19092	19092		1.4819	0	1				3879	5331	2017	2040	3797	3797					0.08447979445304554
APTKTWRRWHR	11	Unmodified	_APTKTWRRWHR_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	HCT116MG_D190212_S4	4	498.9454650878906	3	498.944488	1493.81163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.97	1	49.612	49.112	50.112	-0.35878								0	0	0	0.95925	1	18551	18551		0.50596	0.051438	1				3880	5331	2017	2040	3798	3798					0.08447979445304554
APTSPGCTWTC	11	Unmodified	_APTSPGCTWTC_					0	0	0			REV__FKRP|p.A381Qfs*47|1|0.22|ENSG00000181027|chr19:46756586-46756586|G/-|frameshift_variant	REV__FKRP|p.A381Qfs*47|1|0.22|ENSG00000181027|chr19:46756586-46756586|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	561.772216796875	2	562.230984	1122.44742	0.26406	0.00014846	-0.54632	-0.00030716	-0.28226	-0.00015869	562.2305040514639	20.706	0.93696	20.74	20.142	21.079	0.034473					27	17	2	0	0	0	0.35748	1	7185	7185		17.113	17.113	1	3714100			3881	16824	2018	2041	3799	3799					-0.10891016819573451
APTSPMRCLWS	11	Unmodified	_APTSPMRCLWS_					0	0	0		SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	SLC4A2|p.H318Tfs*10|1|0.32|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	624.237060546875	2	624.796826	1247.5791	0.39382	0.00024606	0.1094	6.8355E-05	0.50322	0.00031441	624.7970182286266	27.571	0.5144	27.249	26.836	27.351	-0.32157					11	9	2	0	0	0	0.36183	1	9907	9907		5.7319	2.7366	1	2183000			3882	18167	2019	2042	3800	3800					-0.03478786731807304
APVAAAALA	9	Unmodified	_APVAAAALA_					0	0	0		ENSG00000176396|ENST00000390658|EID2;EID2|p.L208*|1|0.39|ENSG00000176396|chr19:39539457-39539457|A/-|frameshift_variant	ENSG00000176396|ENST00000390658|EID2	ENSG00000176396|ENST00000390658|EID2	MSMS	HCT116MG_D190212_S4	4	377.724853515625	2	377.726521	753.438489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.464	1	39.083	38.583	39.583	-0.38055								0	0	0	0.77025	1	14500	14500		0	0	1				3883	765	2020	2043	3801	3801					0.051907456685398756
APVAAAALA	9	Unmodified	_APVAAAALA_					0	0	0		ENSG00000176396|ENST00000390658|EID2;EID2|p.L208*|1|0.39|ENSG00000176396|chr19:39539457-39539457|A/-|frameshift_variant	ENSG00000176396|ENST00000390658|EID2	ENSG00000176396|ENST00000390658|EID2	MSMS	HCT116MG_D190212_S4	4	377.72479248046875	2	377.726521	753.438489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.087	1	39.708	39.208	40.208	-0.37936								0	0	0	0.77025	1	14695	14695		0	0	1				3884	765	2020	2043	3802	3802					0.051907456685398756
APVAATARR	9	Unmodified	_APVAATARR_					0	0	0		ENST00000542570.5_2_17:18212223-18218150:-|nuORF;ENST00000584582.5_1_17:18210215-18218150:-|nuORF	ENST00000542570.5_2_17:18212223-18218150:-|nuORF	ENST00000542570.5_2_17:18212223-18218150:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	912.5380249023438	1	912.537375	911.530098	0.65245	0.00059538	0.08397	7.6626E-05	0.73642	0.00067201	912.5372473738757	49.369	0.62997	49.053	48.763	49.393	-0.31596					25	11	3	0	0	0	0.7005	1	18553	18553		5.2307	2.3415	1	16919000			3885	8699	2021	2044	3803	3803					0.07079429085740685
APVAATARR	9	Unmodified	_APVAATARR_					0	0	0		ENST00000542570.5_2_17:18212223-18218150:-|nuORF;ENST00000584582.5_1_17:18210215-18218150:-|nuORF	ENST00000542570.5_2_17:18212223-18218150:-|nuORF	ENST00000542570.5_2_17:18212223-18218150:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	912.537375	911.530098	0.57394	0.00052375	0.31252	0.00028519	0.88647	0.00080894	912.5374096197197	49.352	0.80022	48.99	48.662	49.462	-0.36213	-0.031402	7.9837E-05	NaN	5.2307	41	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50207000			3886	8699	2021	2044							0.07079429085740685
APVDLFNFAPG	11	Unmodified	_APVDLFNFAPG_					0	0	0			REV__PDHB|p.A320V|1|0.34|ENSG00000168291|chr3:58428155-58428155|G/A|missense_variant	REV__PDHB|p.A320V|1|0.34|ENSG00000168291|chr3:58428155-58428155|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	383.197509765625	3	383.197596	1146.57096	0.20799	7.9703E-05	-0.54051	-0.00020712	-0.33252	-0.00012742	383.19734623046367	25.364	0.20813	25.084	24.954	25.162	-0.27958					5	3	2	0	0	0	0.72139	1	9011	9011		7.4771	3.0709	1	2644700	+		3887	17401	2022	2045	3804	3804					0.0035372561469557695
APVDLFNFAPG	11	Unmodified	_APVDLFNFAPG_					0	0	0			REV__PDHB|p.A320V|1|0.34|ENSG00000168291|chr3:58428155-58428155|G/A|missense_variant	REV__PDHB|p.A320V|1|0.34|ENSG00000168291|chr3:58428155-58428155|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		3	383.197596	1146.57096	0.023562	9.0289E-06	-0.61601	-0.00023605	-0.59245	-0.00022702	383.19736844686435	25.075	0.26089	24.969	24.839	25.1	-0.10618	-0.079029	-1.9961E-05	NaN	7.4771	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14349000	+		3888	17401	2022	2045							0.0035372561469557695
APVDLFNFAPG	11	Unmodified	_APVDLFNFAPG_					0	0	0			REV__PDHB|p.A320V|1|0.34|ENSG00000168291|chr3:58428155-58428155|G/A|missense_variant	REV__PDHB|p.A320V|1|0.34|ENSG00000168291|chr3:58428155-58428155|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	383.197596	1146.57096	0.20799	7.9703E-05	-0.54051	-0.00020712	-0.33252	-0.00012742	383.19734623046367	25.364	0.20813	25.084	24.954	25.162	-0.27958	0.035812	6.6833E-05	NaN	7.4771	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2644700	+		3889	17401	2022	2045							0.0035372561469557695
APVFLLLG	8	Unmodified	_APVFLLLG_					0	0	0		ENSG00000180042|ENST00000572493|OR1R1P	ENSG00000180042|ENST00000572493|OR1R1P	ENSG00000180042|ENST00000572493|OR1R1P	MSMS	HCT116MG_D190212_S2	2	415.2628173828125	2	415.262739	828.510926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.076	1	15.742	15.242	16.242	-0.33451								0	0	0	0.8837	1	5386	5386		6.3541	0	1				3890	5579	2023	2046	3805	3805					0.08981079742147813
APVQTPTWCTF	11	Unmodified	_APVQTPTWCTF_					0	0	0			REV__ENST00000471941.5_1_10:45479206-45479773:+|nuORF	REV__ENST00000471941.5_1_10:45479206-45479773:+|nuORF	MSMS	HCT116MG_D190212_S3	3	625.7947387695312	2	625.797349	1249.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.03	1	49.714	49.214	50.214	-0.31525								0	0	0	0.95113	1	18855	18855		5.7319	1.4026	1		+		3891	15878	2024	2047	3806	3806					-0.03466249091275131
APVSPLEPS	9	Unmodified	_APVSPLEPS_					0	0	0		ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	MULTI-SECPEP	HCT116MG_D190212_S3	3	449.26116943359375	2	448.739825	895.465098	0.092024	4.1295E-05	-0.35197	-0.00015794	-0.25995	-0.00011665	448.739620250317	34.296	0.31209	34.001	33.871	34.184	-0.29419					8	5	2	0	0	0	0.20553	1	12581	12581		23.148	0	1	5772400			3892	3941	2025	2048	3807	3807					0.013183897692329083
APVYRKIII	9	Unmodified	_APVYRKIII_					0	0	0			REV__tr|U7SL05|U7SL05_FUSNUHXXEEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02020PE=4SV=1	REV__tr|U7SL05|U7SL05_FUSNUHXXEEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02020PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	358.2333984375	3	358.234093	1071.68045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.281	1	42.281	41.781	42.781	0								0	0	0	0.76991	1	15943	15943		1.1933	0	1		+		3893	17704	2026	2049	3808	3808					0.14747776024705672
APWRWRWRRW	10	Unmodified	_APWRWRWRRW_					0	0	0		ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MSMS	HCT116MG_D190212_S2	2	778.4158935546875	2	778.418346	1554.82214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.569	1	47.44	46.94	47.94	-0.1289								0	0	0	0.96291	1	18149	18149		1.8442	0.77278	1				3894	6808	2027	2050	3809	3809					0.06692006890375524
APYDYLPLFYF	11	Unmodified	_APYDYLPLFYF_					0	0	0			REV__ENST00000521578.5_1_8:142431962-142432205:+|nuORF	REV__ENST00000521578.5_1_8:142431962-142432205:+|nuORF	MSMS	HCT116MG_D190212_S1	1	704.8460083007812	2	704.844822	1407.67509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.224	1	11.224	10.724	11.724	0								0	0	0	0.96121	1	3513	3513		0.30703	0	1		+		3895	16240	2028	2051	3810	3810					-0.0124399234844077
APYKNNPKIKL	11	Unmodified	_APYKNNPKIKL_					0	0	0		tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	643.38525390625	2	643.38498	1284.75541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.035	1	51.726	51.226	52.226	-0.30927								0	0	0	0.95521	1	19661	19661		3.5965	0	1				3896	18420	2029	2052	3811	3811					0.12441913765269419
APYRKALKKPL	11	Unmodified	_APYRKALKKPL_					0	0	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MSMS	HCT116MG_D190212_S3	3	643.0562133789062	2	642.911165	1283.80778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.713	1	54.417	53.917	54.917	-0.29587								0	0	0	0.95521	1	20738	20738		3.5965	0.31518	1		+		3897	14056	2030	2053	3812	3812					0.17722496898886675
APYVHAAPGP	10	Unmodified	_APYVHAAPGP_					0	0	0			REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	490.251953125	2	490.253434	978.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.73	1	22.493	21.993	22.993	-0.23758								0	0	0	0.83198	1	7923	7923		24.674	2.9272	1		+		3898	10449	2031	2054	3813	3813					0.002209181002854166
AQANVIGP	8	Unmodified	_AQANVIGP_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MSMS	HCT116MG_D190212_S2	2	385.21331787109375	2	385.213778	768.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.411	1	16.069	15.569	16.569	-0.34183								0	0	0	0.8837	1	5521	5521		14.582	1.0738	1				3899	1262	2032	2055	3814	3814					0.019532711461351937
AQASLTADAV	10	Unmodified	_AQASLTADAV_					0	0	0			REV__HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant	REV__HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	474.24365234375	2	473.745639	945.476725	0.14567	6.901E-05	-0.43315	-0.0002052	-0.28748	-0.00013619	473.7455849344755	21.438	0.63259	21.456	21.219	21.851	0.018446					19	11	2	0	0	0	0.65652	1	7606	7606		24.021	2.2739	1	52645000	+		3900	10939	2033	2056	3815	3815					0.001805867925554594
AQDEHLITF	9	Unmodified	_AQDEHLITF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2671508789062	2	537.266739	1072.51892	0.62155	0.00033394	-0.13014	-6.992E-05	0.49141	0.00026402	537.2665899626614	47.325	0.41342	47.203	47.026	47.439	-0.12175					19	7	3	0	0	0	0.045679	1	18037	18037		76.825	29.076	1	36021000			3901	3846	2034	2057	3816	3816					-0.014434377990482972
AQDLGVVNL	9	Unmodified	_AQDLGVVNL_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S3	3	928.51123046875	1	928.509822	927.502546	0.89833	0.00083411	0.57633	0.00053513	1.4747	0.0013692	928.5104364385631	49.369	0.20929	49.053	48.922	49.132	-0.31596					5	3	2	0	0	0	0.047849	1	18608	18608		75.761	28.012	1	3615000			3902	1349	2035	2058	3817	3817					0.03589481034839537
AQDPEIASL	9	Unmodified	_AQDPEIASL_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	HCT116MG_D190212_S2	2	943.4747314453125	1	943.473103	942.465826	0.76573	0.00072245	-0.87193	-0.00082264	-0.10619	-0.00010019	943.4728125019718	42.433	0.20878	42.363	42.273	42.481	-0.069981					5	3	2	0	0	0	0.05892	1	16094	16094		70.332	16.499	1	15778000			3903	2308	2036	2059	3818	3818					-0.007708155817113038
AQDPEIASL	9	Unmodified	_AQDPEIASL_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MSMS	HCT116MG_D190212_S3	3	943.4725952148438	1	943.473103	942.465826	0.69659	0.00065721	-0.59337	-0.00055983	0.10321	9.7379E-05	943.4727567476192	42.63	0.417	42.327	42.092	42.509	-0.30352					10	7	2	0	0	0	0.0058997	1	15912	15912		129.77	37.119	1	4089200			3904	2308	2036	2059	3819	3819					-0.007708155817113038
AQDPEIASL	9	Unmodified	_AQDPEIASL_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-MATCH	HCT116MG_D190212_S4	4		1	943.473103	942.465826	0.59899	0.00056513	-1.139	-0.0010746	-0.54002	-0.0005095	943.4730002311064	42.707	0.15427	42.332	42.202	42.357	-0.37493	-0.008648	-0.00042508	NaN	129.77	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1311500			3905	2308	2036	2059							-0.007708155817113038
AQEAAQKRLQA	11	Unmodified	_AQEAAQKRLQA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	HCT116MG_D190212_S2	2	607.3358154296875	2	607.336018	1212.65748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.875	1	16.533	16.033	17.033	-0.34183								0	0	0	0.93749	1	5708	5708		12.873	0.69786	1				3906	5492	2037	2060	3820	3820					0.059661051692728506
AQEERKEA	8	Unmodified	_AQEERKEA_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	HCT116MG_D190212_S3	3	480.7406005859375	2	480.740888	959.467223	0.10825	5.2038E-05	0.15976	7.6803E-05	0.26801	0.00012884	480.740794625454	20.341	0.52053	20.389	20.259	20.78	0.048107					14	9	2	0	0	0	0.22303	1	7042	7042		69.105	11.856	1	16409000	+		3907	14373	2038	2061	3821	3821					-0.01413181492955573
AQEIDSYFRQE	11	Unmodified	_AQEIDSYFRQE_					0	0	0		ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	MSMS	HCT116MG_D190212_S4	4	693.3199462890625	2	693.320231	1384.62591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.276	1	19.089	18.589	19.589	-0.18674								0	0	0	0.94385	1	6527	6527		9.544	0.79857	1				3908	6655	2039	2062	3822	3822					-0.05101932375305296
AQFAHSYEFY	10	Unmodified	_AQFAHSYEFY_					0	0	0			REV__ENSG00000113318|ENST00000265081|MSH3	REV__ENSG00000113318|ENST00000265081|MSH3	MSMS	HCT116MG_D190212_S3	3	421.52056884765625	3	421.520739	1261.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.875	1	26.715	26.215	27.215	-0.16036								0	0	0	0.94698	1	9661	9661		5.4027	1.5264	1		+		3909	11480	2040	2063	3823	3823					-0.0799205277035071
AQFEHTILL	9	Unmodified	_AQFEHTILL_					0	0	0		ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-3|METAP2;nc|ENSG00000111142|P50579-2|METAP2	ENSG00000111142|ENST00000323666|METAP2	ENSG00000111142|ENST00000323666|METAP2	MULTI-MSMS	HCT116MG_D190212_S1	1	536.7966918945312	2	536.295299	1070.57605	0.19909	0.00010677	0.29853	0.0001601	0.49761	0.00026687	536.2954806776568	50.6	0.25784	50.6	50.42	50.678	0					11	4	3	0	0	0	0.066823	1	19319	19319		66.457	14.188	1	56297000			3910	2273	2041	2064	3824	3824					0.04358029477339187
AQFEHTILL	9	Unmodified	_AQFEHTILL_					0	0	0		ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-3|METAP2;nc|ENSG00000111142|P50579-2|METAP2	ENSG00000111142|ENST00000323666|METAP2	ENSG00000111142|ENST00000323666|METAP2	MULTI-MSMS	HCT116MG_D190212_S2	2	536.2952270507812	2	536.295299	1070.57605	0.50785	0.00027236	-0.54781	-0.00029379	-0.039956	-2.1428E-05	536.2951600295039	50.704	0.36251	50.532	50.351	50.713	-0.1719					15	6	4	0	0	0	0.034046	1	19441	19441		82.529	30.261	1	107400000			3911	2273	2041	2064	3825	3825					0.04358029477339187
AQGEKYYH	8	Unmodified	_AQGEKYYH_					0	0	0			REV__ENSG00000113966|ENST00000463745|ARL6	REV__ENSG00000113966|ENST00000463745|ARL6	MSMS	HCT116MG_D190212_S2	2	498.2309265136719	2	498.232699	994.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.85	1	17.493	16.993	17.993	-0.35647								0	0	0	0.74658	1	6100	6100		26.884	1.8927	1		+		3912	11499	2042	2065	3826	3826					-0.04660262659047021
AQGPPGPAGPA	11	Unmodified	_AQGPPGPAGPA_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	460.24041748046875	2	460.235242	918.45593	0.40324	0.00018558	0.64536	0.00029702	1.0486	0.0004826	460.23558603728657	23.278	0.31272	23.238	23.083	23.396	-0.03968					9	5	2	0	0	0	0.17664	1	8196	8196		78.149	32.128	1	1669900			3913	513;514	2043	2066	3827	3827					-0.006559587964261482
AQGPPGPAGPA	11	Unmodified	_AQGPPGPAGPA_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	460.235242	918.45593	-0.018216	-8.3837E-06	0.10972	5.0497E-05	0.091504	4.2113E-05	460.2352113339448	23.441	0.3126	23.194	23.011	23.324	-0.24775	-0.022446	-0.00014176	NaN	78.149	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2555100			3914	513;514	2043	2066							-0.006559587964261482
AQIPTPGH	8	Unmodified	_AQIPTPGH_					0	0	0			REV__GTF2H1|p.S391A|1|0.23|ENSG00000110768|chr11:18352357-18352357|T/G|missense_variant	REV__GTF2H1|p.S391A|1|0.23|ENSG00000110768|chr11:18352357-18352357|T/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	410.71856689453125	2	410.719227	819.423902	0.30402	0.00012487	-1.2646	-0.0005194	-0.96059	-0.00039453	410.7185936979111	41.68	0.25999	41.68	41.498	41.758	0					7	4	2	0	0	0	0.85329	1	15708	15708		4.756	0	1	9442800	+		3915	16862	2044	2067	3828	3828					0.006966735204287033
AQIRLDTTK	9	Unmodified	_AQIRLDTTK_					0	0	0			REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	523.303466796875	2	523.303655	1044.59276	0.38243	0.00020013	0.21485	0.00011243	0.59728	0.00031256	523.3036513002883	47.414	1.968	47.414	46.44	48.408	0					106	38	4	0	0	0	0.64246	1	18369	18369		8.7454	0.58988	1	136680000	+		3916	9899	2045	2068	3829	3829					0.07224530363259873
AQKLPPGPVV	10	Unmodified	_AQKLPPGPVV_					0	0	0			REV__PHRF1|p.P669Q|1|0.21|ENSG00000070047|chr11:607462-607462|C/A|missense_variant	REV__PHRF1|p.P669Q|1|0.21|ENSG00000070047|chr11:607462-607462|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	503.305908203125	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.189	1	39.189	38.689	39.689	0								0	0	0	0.93854	1	14695	14695		7.2892	1.5288	1		+		3917	17417	2046	2069	3830	3830					0.09974923719607887
AQKQAAAAAK	10	Unmodified	_AQKQAAAAAK_					0	0	0			REV__ENST00000477040.1_1_1:36921391-36921985:-|nuORF	REV__ENST00000477040.1_1_1:36921391-36921985:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	479.77935791015625	2	479.277441	956.540328	0.42636	0.00020434	-0.078596	-3.7669E-05	0.34776	0.00016667	479.27721566234277	45.845	0.96188	45.472	44.736	45.698	-0.37206					35	19	2	0	0	0	0.87059	1	16978	16978		5.7319	0.43497	1	9310000	+		3918	11599	2047	2070	3831	3831					0.06031992020302823
AQLCAWPWP	9	Unmodified	_AQLCAWPWP_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2;MTIF2|p.G590Efs*2|2|0.27|ENSG00000085760|chr2:55240114-55240114|T/-|frameshift_variant;MTIF2|p.T194Rfs*37|1|0.38|ENSG00000085760|chr2:55254125-55254125|T/-|frameshift_variant	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	MSMS	HCT116MG_D190212_S4	4	536.1655883789062	2	536.257662	1070.50077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.916	1	15.753	15.253	16.253	-0.16364								0	0	0	0.768	1	5169	5169		7.9102	1.7044	1				3919	1460	2048	2071	3832	3832					-0.03165851254766494
AQLNAESAQ	9	Unmodified	_AQLNAESAQ_					0	0	0			REV__nc|ENSG00000055957|P19827-3|ITIH1	REV__nc|ENSG00000055957|P19827-3|ITIH1	MSMS	HCT116MG_D190212_S3	3	466.227783203125	2	466.227613	930.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.251	1	17.336	16.836	17.836	0.084467								0	0	0	0.32965	1	5783	5783		37.974	13.953	1		+		3920	10650	2049	2072	3833	3833					-0.027328703842840696
AQLQLERQLI	10	Unmodified	_AQLQLERQLI_					0	0	0		PLGRKT|p.R25Q|1|0.2|ENSG00000107020|chr9:5431904-5431904|C/T|missense_variant	PLGRKT|p.R25Q|1|0.2|ENSG00000107020|chr9:5431904-5431904|C/T|missense_variant	PLGRKT|p.R25Q|1|0.2|ENSG00000107020|chr9:5431904-5431904|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	606.6942138671875	2	606.358962	1210.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.818	1	39.818	39.318	40.318	0								0	0	0	0.94339	1	14948	14948		6.2058	0.9089	1				3921	9756	2050	2073	3834	3834					0.10644750351525545
AQLRKLISE	9	Unmodified	_AQLRKLISE_					0	0	0		ENSG00000178372|ENST00000380332|CALML5	ENSG00000178372|ENST00000380332|CALML5	ENSG00000178372|ENST00000380332|CALML5	MSMS	HCT116MG_D190212_S4	4	353.2169494628906	3	353.216991	1056.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.082	1	44.709	44.209	45.209	-0.37273								0	0	0	0.76998	1	16618	16618		0.96228	0.33545	1				3922	5498	2051	2074	3835	3835					0.10309407260024273
AQNIAKVIFIY	11	Unmodified	_AQNIAKVIFIY_					0	0	0			REV__nc|ENSG00000080561|Q9UJV3-2|MID2	REV__nc|ENSG00000080561|Q9UJV3-2|MID2	MSMS	HCT116MG_D190212_S4	4	427.2512512207031	3	427.251813	1278.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.21	1	61.961	61.461	62.461	-0.24919								0	0	0	0.95954	1	23487	23487		1.3296	0.11481	1		+		3923	10864	2052	2075	3836	3836					0.10539109016713155
AQPEQAPQ	8	Unmodified	_AQPEQAPQ_					0	0	0		ENST00000396987.7_1_8:41479719-41480088:+|nuORF	ENST00000396987.7_1_8:41479719-41480088:+|nuORF	ENST00000396987.7_1_8:41479719-41480088:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	434.7112121582031	2	434.711599	867.408646	-0.0185	-8.042E-06	-0.54652	-0.00023758	-0.56502	-0.00024562	434.71128379731545	17.894	0.31336	17.537	17.388	17.702	-0.35647					7	5	2	0	0	0	0.53596	1	6141	6141		37.974	1.847	1	5236200			3924	7661	2053	2076	3837	3837					-0.030362380674318956
AQPGPQAPNPR	11	Unmodified	_AQPGPQAPNPR_					0	0	0			REV__ENST00000370491.7_1_1:89435115-89458421:-|nuORF	REV__ENST00000370491.7_1_1:89435115-89458421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	566.7969360351562	2	566.796529	1131.5785	0.4505	0.00025534	-0.041217	-2.3362E-05	0.40928	0.00023198	566.7965063342714	20.995	0.31124	20.785	20.656	20.967	-0.20959					8	5	2	0	0	0	0.6626	1	7250	7250		28.495	2.2264	1	2481600	+		3925	14622	2054	2077	3838	3838					0.017978779349732577
AQQLQSTPAPP	11	Unmodified	_AQQLQSTPAPP_					0	0	0			REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF	REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF	MSMS	HCT116MG_D190212_S1	1	569.2968139648438	2	569.29857	1136.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.478	1	48.478	47.978	48.978	0								0	0	0	0.95196	1	18448	18448		5.2969	2.3016	1		+		3926	11301	2055	2078	3839	3839					0.019759226380301698
AQSQEKTRREM	11	Unmodified	_AQSQEKTRREM_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant;AGTPBP1|p.K1079Nfs*10|1|0.38|ENSG00000135049|chr9:85579025-85579025|T/-|frameshift_variant;ENST00000491784.3_1_9:88292482-88307697:-|nuORF;ENST00000376080.2_1_9:88272482-88307688:-|nuORF;ENST00000376081.8_1_9:88270186-88327448:-|nuORF	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MSMS	HCT116MG_D190212_S2	2	682.3406372070312	2	682.340975	1362.6674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.571	1	30.286	29.786	30.786	-0.28453								0	0	0	0.94012	1	11245	11245		11.495	2.7493	1				3927	3325	2056	2079	3840	3840					0.0005692511233519326
AQSTKSPW	8	Unmodified	_AQSTKSPW_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	HCT116MG_D190212_S1	1	452.7294006347656	2	452.729792	903.445031	-0.070102	-3.1737E-05	-0.64347	-0.00029132	-0.71358	-0.00032306	452.7292361819925	42.664	0.30947	42.664	42.538	42.847	0					6	5	2	0	0	0	0.85329	1	16134	16134		4.756	0	1	6117800			3928	1958	2057	2080	3841	3841					-0.010553611707223354
AQTRETWVRR	10	Unmodified	_AQTRETWVRR_					0	0	0			REV__ENST00000471600.6_1_1:21924475-21926051:-|nuORF	REV__ENST00000471600.6_1_1:21924475-21926051:-|nuORF	MSMS	HCT116MG_D190212_S4	4	434.90557861328125	3	434.905698	1301.69527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.006	1	15.842	15.342	16.342	-0.16364								0	0	0	0.96337	1	5206	5206		1.7423	0.28716	1		+		3929	15204	2058	2081	3842	3842					0.056486161547582014
AQVRRRLQELD	11	Unmodified	_AQVRRRLQELD_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S1	1	462.26641845703125	3	461.932025	1382.77424	0.10271	4.7443E-05	-0.071271	-3.2922E-05	0.031434	1.452E-05	461.93187953923706	16.291	0.20814	16.291	16.161	16.369	0					9	3	3	0	0	0	0.65047	1	5482	5482		19.144	5.6253	1	16546000			3930	1517	2059	2082	3843	3843					0.09816843389035057
AQWHEQILV	9	Unmodified	_AQWHEQILV_					0	0	0		ENST00000491911.5_1_9:140508423-140509541:+|nuORF;ENSG00000197070|ENST00000371421|ARRDC1	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	ENST00000491911.5_1_9:140508423-140509541:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	562.2982177734375	2	562.298373	1122.58219	0.51772	0.00029111	-0.059744	-3.3594E-05	0.45798	0.00025752	562.2980741440341	46.21	0.25851	46.21	46.079	46.337	0					9	4	3	0	0	0	0.21258	1	17553	17553		39.95	19.496	1	26707000			3931	6117	2060	2083	3844	3844					0.02580547708839731
AQYEHDLEVA	10	Unmodified	_AQYEHDLEVA_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENST00000413691.2_1_4:174554896-174555010:-|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	HCT116MG_D190212_S1	1	587.7727661132812	2	587.772385	1173.53022	0.79945	0.00046989	-0.0023048	-1.3547E-06	0.79714	0.00046854	587.7722738524045	33.016	0.29758	33.016	32.843	33.141	0					12	5	3	0	0	0	0.066546	1	12208	12208		80.676	38.72	1	19711000			3932	3179	2061	2084	3845	3845					-0.049606604955670264
AQYEHDLEVA	10	Unmodified	_AQYEHDLEVA_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENST00000413691.2_1_4:174554896-174555010:-|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	HCT116MG_D190212_S2	2	587.7725219726562	2	587.772385	1173.53022	0.85219	0.00050089	-0.47656	-0.00028011	0.37562	0.00022078	587.7720755309144	33.182	0.31092	32.97	32.845	33.156	-0.21135					11	5	3	0	0	0	0.066546	1	12307	12307		80.676	30.743	1	65157000			3933	3179	2061	2084	3846	3846					-0.049606604955670264
AQYENPPHI	9	Unmodified	_AQYENPPHI_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;MYO1F|p.N396Kfs*13|1|0.44|ENSG00000142347|chr19:8548117-8548118|-/T|frameshift_variant;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	HCT116MG_D190212_S2	2	534.7596435546875	2	534.759081	1067.50361	0.31653	0.00016927	0.78269	0.00041855	1.0992	0.00058782	534.7595404433363	32.42	0.20819	32.19	32.098	32.306	-0.23009					5	3	2	0	0	0	0.47829	1	12024	12024		18.135	3.2967	1	12413000			3934	4329	2062	2085	3847	3847					-0.027443045962399992
AQYNTRKKE	9	Unmodified	_AQYNTRKKE_					0	0	0			REV__RFC1|p.R383Q|1|0.42|ENSG00000035928|chr4:39316970-39316970|C/T|missense_variant	REV__RFC1|p.R383Q|1|0.42|ENSG00000035928|chr4:39316970-39316970|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.3042602539062	2	569.304187	1136.59382	0.31726	0.00018062	0.063578	3.6195E-05	0.38084	0.00021681	569.304084564066	15.998	0.20886	15.663	15.533	15.741	-0.33451					5	3	2	0	0	0	0.58135	1	5379	5379		12.241	0.72278	1	10493000	+		3935	10578	2063	2086	3848	3848					0.030987447321649597
ARAPGTRTL	9	Unmodified	_ARAPGTRTL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	471.7775573730469	2	471.777608	941.540663	0.21461	0.00010125	0.033645	1.5873E-05	0.24826	0.00011712	471.7775675380957	19.887	0.3138	19.887	19.756	20.07	0					13	5	3	0	0	0	0.0081783	1	6923	6923		117.84	10.738	1	36706000			3936	5276	2064	2087	3849	3849					0.0675541174019827
ARAPGTRTL	9	Unmodified	_ARAPGTRTL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	471.77764892578125	2	471.777608	941.540663	0.25059	0.00011822	-0.011797	-5.5657E-06	0.23879	0.00011266	471.77753388914664	20.695	0.3161	20.316	20.13	20.446	-0.37949					15	5	4	0	0	0	0.01386	1	7245	7245		103.82	7.457	1	85511000			3937	5276	2064	2087	3850	3850					0.0675541174019827
ARASHYAPQR	10	Unmodified	_ARASHYAPQR_					0	0	0			REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	MSMS	HCT116MG_D190212_S4	4	386.2031555175781	3	386.203856	1155.58974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.385	1	29.036	28.536	29.536	-0.34921								0	0	0	0.94528	1	10609	10609		5.7834	1.839	1		+		3938	15441	2065	2088	3851	3851					0.018167000291214208
ARDQTAAL	8	Unmodified	_ARDQTAAL_					0	0	0		IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant;ENSG00000167378|ENST00000422989|IRGQ	IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant	IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	423.2273864746094	2	423.227417	844.44028	0.038034	1.6097E-05	-0.060711	-2.5694E-05	-0.022676	-9.5973E-06	423.22732478517	23.043	0.36427	22.658	22.466	22.83	-0.3852					11	6	3	0	0	0	0.63727	1	8197	8197		29.082	0.59474	1	19079000			3939	4917	2066	2089	3852	3852					0.011837546865194781
AREPEERP	8	Unmodified	_AREPEERP_					0	0	0			REV__ENST00000569248.5_1_16:730446-730920:+|nuORF	REV__ENST00000569248.5_1_16:730446-730920:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	983.489990234375	1	983.490484	982.483208	0.68591	0.00067459	-0.31435	-0.00030916	0.37157	0.00036543	983.4901217924457	16.189	0.36586	15.855	15.689	16.055	-0.33451					10	6	2	0	0	0	0.17427	1	5436	5436		78.728	0	1	2394400	+		3940	16568	2067	2090	3853	3853					-0.008734752560485504
AREPPPPPP	9	Unmodified	_AREPPPPPP_					0	0	0			REV__PRDM6|p.E63G|1|0.14|ENSG00000061455|chr5:123090202-123090202|A/G|missense_variant	REV__PRDM6|p.E63G|1|0.14|ENSG00000061455|chr5:123090202-123090202|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	479.7466735839844	2	479.261259	956.507966	0.1832	8.7799E-05	-0.36908	-0.00017689	-0.18589	-8.9089E-05	479.26101220309545	20.964	1.7728	20.582	20.073	21.846	-0.38288					61	33	3	0	0	0	0.031089	2	7345	7238;7345		85.272	20.037	1	14654000	+		3941	10672	2068	2091	3854;3855	3855					0.027972046173204035
AREPPPPPP	9	Unmodified	_AREPPPPPP_					0	0	0			REV__PRDM6|p.E63G|1|0.14|ENSG00000061455|chr5:123090202-123090202|A/G|missense_variant	REV__PRDM6|p.E63G|1|0.14|ENSG00000061455|chr5:123090202-123090202|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	479.26123046875	2	479.261259	956.507966	0.11211	5.3732E-05	0.021337	1.0226E-05	0.13345	6.3958E-05	479.26118646682625	20.422	1.9856	20.471	19.738	21.724	0.048107					71	37	3	0	0	0	0.28073	2	6891	6891;7443		32.786	5.902	1	8694200	+		3942	10672	2068	2091	3856;3857	3856					0.027972046173204035
ARERKRRRQ	9	Unmodified	_ARERKRRRQ_					0	0	0		nc|ENSG00000145014|Q2T9K0|TMEM44;nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44	nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0|TMEM44	MULTI-MSMS	HCT116MG_D190212_S1	1	628.8348388671875	2	628.38196	1254.74937	0.51423	0.00032313	1.525	0.00095831	2.0393	0.0012814	628.3825852571941	48.007	0.41374	48.007	47.841	48.254	0					16	7	3	0	0	0	0.72852	2	18214	18214;18257		3.2813	1.7994	1	23078000			3943	9488	2069	2092	3858;3859	3858					0.13218253096965782
ARFGHGSDY	9	Unmodified	_ARFGHGSDY_					0	0	0		nc|ENSG00000137776|Q9NWH9-3|SLTM;ENSG00000137776|ENST00000380516|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	nc|ENSG00000137776|Q9NWH9-3|SLTM	MULTI-MSMS	HCT116MG_D190212_S2	2	505.2281188964844	2	505.227948	1008.44134	0.60516	0.00030574	-0.26161	-0.00013217	0.34354	0.00017357	505.227801075213	22.304	0.20734	21.919	21.791	21.999	-0.3852					8	3	3	0	0	0	0.066823	1	7903	7903		66.457	44.71	1	27811000			3944	3500	2070	2093	3860	3860					-0.0625403094458079
ARGGSGKGAP	10	Unmodified	_ARGGSGKGAP_					0	0	0			REV__ENST00000416247.3_1_6:11094319-11094565:+|nuORF	REV__ENST00000416247.3_1_6:11094319-11094565:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	2	429.233033	856.451513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.436	1	24.168	23.668	24.668	-0.26881								0	0	0	0.94107	1	8609	8609		6.7232	0.36906	1		+		3945	15474	2071	2094	3861	3861					0.01754576780649586
ARGPIQIL	8	Unmodified	_ARGPIQIL_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	HCT116MG_D190212_S2	2	867.5421142578125	1	867.541063	866.533787	0.80005	0.00069408	-0.053674	-4.6565E-05	0.74638	0.00064752	867.5409247911045	46.144	0.46325	46.043	45.812	46.275	-0.1014					19	8	3	0	0	0	0.050259	1	17544	17544		123.1	40.157	1	98614000			3946	1025	2072	2095	3862	3862					0.09518098859621205
ARGPIQIL	8	Unmodified	_ARGPIQIL_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	HCT116MG_D190212_S3	3	434.2742004394531	2	434.27417	866.533787	0.40342	0.00017519	-0.19536	-8.4841E-05	0.20806	9.0353E-05	434.2739656436664	46.465	0.54953	46.153	45.942	46.491	-0.31237					23	10	3	0	0	0	0.21487	1	17384	17384		70.716	3.6802	1	78523000			3947	1025	2072	2095	3863	3863					0.09518098859621205
ARGPIQIL	8	Unmodified	_ARGPIQIL_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	HCT116MG_D190212_S3	3	867.5408935546875	1	867.541063	866.533787	1.033	0.00089613	-0.71983	-0.00062448	0.31312	0.00027165	867.5398176973841	46.465	0.30473	46.153	45.978	46.283	-0.31237					8	5	2	0	0	0	0.12463	1	17445	17445		89.427	18.562	1	4990400			3948	1025	2072	2095	3864	3864					0.09518098859621205
ARGPQLLL	8	Unmodified	_ARGPQLLL_					0	0	0		ENST00000474629.6_1_3:122449243-122449357:+|nuORF	ENST00000474629.6_1_3:122449243-122449357:+|nuORF	ENST00000474629.6_1_3:122449243-122449357:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	434.2740173339844	2	434.27417	866.533787	0.16303	7.0798E-05	0.20239	8.7892E-05	0.36541	0.00015869	434.2741972100073	46.156	0.4148	46.156	45.922	46.337	0					17	7	3	0	0	0	0.15838	1	17495	17495		81.864	0	1	105620000			3949	8189	2073	2096	3865	3865					0.09518098859621205
ARGPQLLL	8	Unmodified	_ARGPQLLL_					0	0	0		ENST00000474629.6_1_3:122449243-122449357:+|nuORF	ENST00000474629.6_1_3:122449243-122449357:+|nuORF	ENST00000474629.6_1_3:122449243-122449357:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	435.2698974609375	2	434.27417	866.533787	0.33945	0.00014741	-0.18926	-8.2192E-05	0.15018	6.5221E-05	434.27403193567744	46.523	0.45808	46.152	45.974	46.432	-0.37134					20	10	3	0	0	0	0.73076	1	17147	17147		19.439	0	1	16186000			3950	8189	2073	2096	3866	3866					0.09518098859621205
ARKKKINRQ	9	Unmodified	_ARKKKINRQ_					0	0	0			REV__nc|ENSG00000123965|A8MQ11|PMS2P5	REV__nc|ENSG00000123965|A8MQ11|PMS2P5	MSMS	HCT116MG_D190212_S4	4	381.2483825683594	3	381.247396	1140.72036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.907	1	47.538	47.038	48.038	-0.36907								0	0	0	0.77018	1	17725	17725		0.26902	0.062163	1		+		3951	17081	2074	2097	3867	3867					0.15562715747978473
ARKLRVYKG	9	Unmodified	_ARKLRVYKG_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MSMS	HCT116MG_D190212_S3	3	364.23248291015625	3	364.232975	1089.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.796	1	57.521	57.021	58.021	-0.27434								0	0	0	0.77018	1	21972	21972		0.26902	0	1		+		3952	11489	2075	2098	3868	3868					0.13584525970668437
ARKLRVYKG	9	Unmodified	_ARKLRVYKG_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MSMS	HCT116MG_D190212_S3	3	364.23272705078125	3	364.232975	1089.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.855	1	57.58	57.08	58.08	-0.27434								0	0	0	0.77018	1	21996	21996		0.26902	0	1		+		3953	11489	2075	2098	3869	3869					0.13584525970668437
ARLFEEQNERD	11	Unmodified	_ARLFEEQNERD_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	HCT116MG_D190212_S2	2	703.8369750976562	2	703.836579	1405.65861	0.77768	0.00054736	-0.4381	-0.00030835	0.33958	0.00023901	703.8361964854661	19.402	1.4043	19.032	18.366	19.771	-0.3695					44	26	3	0	0	0	0.6229	2	6611	6611;6883		32.898	32.898	1	8709400	+		3954	11407	2076	2099	3870;3871	3870					-0.027997252524755822
ARLFEEQNERD	11	Unmodified	_ARLFEEQNERD_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	HCT116MG_D190212_S3	3	703.8372192382812	2	703.836579	1405.65861	0.73196	0.00051518	-0.16121	-0.00011347	0.57075	0.00040171	703.8364270154361	18.965	1.5099	19.035	18.146	19.655	0.069159					66	28	3	0	0	0	0.6229	3	6446	6221;6446;6684		32.898	32.898	1	9981200	+		3955	11407	2076	2099	3872;3873;3874	3873					-0.027997252524755822
ARLFEEQNERD	11	Unmodified	_ARLFEEQNERD_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-SECPEP	HCT116MG_D190212_S3	3	704.3386840820312	2	703.836579	1405.65861	0.73196	0.00051518	-0.16121	-0.00011347	0.57075	0.00040171	703.8364270154361	18.965	1.5099	19.035	18.146	19.655	0.069159					66	28	3	0	0	0	0.35033	1	6221	6221		23.801	23.801	1	9981200	+		3956	11407	2076	2099	3875	3875					-0.027997252524755822
ARLFEEQNERD	11	Unmodified	_ARLFEEQNERD_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	HCT116MG_D190212_S4	4	703.8365478515625	2	703.836579	1405.65861	0.69669	0.00049036	-0.30433	-0.0002142	0.39237	0.00027616	703.8362187185368	18.962	1.6007	18.775	18.09	19.691	-0.18674					80	30	3	0	0	0	0.56597	4	6247	6247;6473;6723;6767		39.213	39.213	1	6584400	+		3957	11407	2076	2099	3876;3877;3878;3879	3876					-0.027997252524755822
ARLFEEQNERD	11	Unmodified	_ARLFEEQNERD_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MATCH	HCT116MG_D190212_S1	1		2	703.836579	1405.65861	0.65529	0.00046122	0.29825	0.00020992	0.95354	0.00067113	703.8360970944445	18.972	0.26066	18.972	18.871	19.131	0	0.018274	0.00079921	NaN	39.213	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1007900	+		3958	11407	2076	2099							-0.027997252524755822
ARLFEEQNERD	11	Unmodified	_ARLFEEQNERD_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	703.836579	1405.65861	0.69669	0.00049036	-0.30433	-0.0002142	0.39237	0.00027616	703.8362187185368	18.962	1.6007	18.775	18.09	19.691	-0.18674	-0.17808	-4.9011E-05	NaN	39.213	80	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6584400	+		3959	11407	2076	2099							-0.027997252524755822
ARLGGSDWEHA	11	Unmodified	_ARLGGSDWEHA_					0	0	0			REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF	REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	400.8859558105469	3	400.191504	1197.55268	-0.12333	-4.9356E-05	-0.48715	-0.00019495	-0.61048	-0.00024431	400.1914547560301	20.132	0.20738	19.757	19.61	19.817	-0.37503					5	3	2	0	0	0	0.55243	1	7008	7008		40.714	22.375	1	2623200	+		3960	16593	2077	2100	3880	3880					-0.03819016307261336
ARLIEAAEM	9	Unmodified	_ARLIEAAEM_					0	0	0		ENSG00000179104|ENST00000321196|TMTC2;TMTC2|p.A737Qfs*4|1|0.25|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant	ENSG00000179104|ENST00000321196|TMTC2	ENSG00000179104|ENST00000321196|TMTC2	MULTI-MSMS	HCT116MG_D190212_S3	3	502.2658996582031	2	502.265684	1002.51682	0.31256	0.00015699	0.12543	6.2999E-05	0.43799	0.00021999	502.26562331599393	41.863	0.22695	41.56	41.45	41.677	-0.30257					6	4	2	0	0	0	0.41514	1	15584	15584		21.747	1.293	1	8808900			3961	5536	2078	2101	3881	3881					0.015658101914937106
ARLPLLLPDH	10	Unmodified	_ARLPLLLPDH_					0	0	0		ENST00000607532.5_1_6:13328532-13328775:-|nuORF;ENST00000607230.1_1_6:13327129-13328784:-|nuORF	ENST00000607532.5_1_6:13328532-13328775:-|nuORF	ENST00000607532.5_1_6:13328532-13328775:-|nuORF	MSMS	HCT116MG_D190212_S2	2	382.1845397949219	3	382.232752	1143.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.036	1	24.66	24.16	25.16	-0.37521								0	0	0	0.92272	1	8998	8998		6.1918	1.2948	1				3962	9118	2079	2102	3882	3882					0.11033686530981868
ARNERIYVY	9	Unmodified	_ARNERIYVY_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	HCT116MG_D190212_S1	1	592.3153076171875	2	592.314554	1182.61456	0.77596	0.00045961	0.2857	0.00016923	1.0617	0.00062884	592.3149064419631	31.108	0.26052	31.108	30.971	31.232	0					10	4	3	0	0	0	0.019537	1	11454	11454		96.936	69.307	1	8169100			3963	5440	2080	2103	3883	3883					0.030553351118669525
ARNERIYVY	9	Unmodified	_ARNERIYVY_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	HCT116MG_D190212_S2	2	592.3148193359375	2	592.314554	1182.61456	0.83667	0.00049557	-0.03684	-2.1821E-05	0.79983	0.00047375	592.3143905665089	31.421	0.36218	31.172	30.992	31.354	-0.24883					14	6	3	0	0	0	0.014023	1	11592	11592		103.42	68.487	1	53200000			3964	5440	2080	2103	3884	3884					0.030553351118669525
ARNERIYVY	9	Unmodified	_ARNERIYVY_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	HCT116MG_D190212_S2	2	395.2117614746094	3	395.212128	1182.61456	0.2638	0.00010426	-0.7565	-0.00029898	-0.4927	-0.00019472	395.21181046494314	31.398	0.25837	31.149	31.043	31.302	-0.24883					9	4	3	0	0	0	0.45684	1	11622	11622		18.721	3.7641	1	10359000			3965	5440	2080	2103	3885	3885					0.030553351118669525
ARNERIYVY	9	Unmodified	_ARNERIYVY_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	HCT116MG_D190212_S3	3	592.3151245117188	2	592.314554	1182.61456	0.55213	0.00032703	0.34322	0.00020329	0.89534	0.00053032	592.3146885544716	31.538	0.20866	31.268	31.169	31.378	-0.27027					7	3	3	0	0	0	0.20983	1	11544	11544		40.239	19.786	1	5709300			3966	5440	2080	2103	3886	3886					0.030553351118669525
ARNERIYVY	9	Unmodified	_ARNERIYVY_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MATCH	HCT116MG_D190212_S3	3		3	395.212128	1182.61456	-0.073051	-2.887E-05	-0.068807	-2.7193E-05	-0.14186	-5.6064E-05	395.5464257838108	31.518	0.15656	31.247	31.169	31.326	-0.27028	0.049081	0.00032875	NaN	18.721	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3138100			3967	5440	2080	2103							0.030553351118669525
ARQVHIRRQRR	11	Unmodified	_ARQVHIRRQRR_					0	0	0			REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	738.44873046875	2	738.448166	1474.88178	0.9013	0.00066556	0.053541	3.9537E-05	0.95484	0.0007051	738.4481181912531	53.848	2.1963	53.848	53.153	55.349	0					169	42	5	0	0	0	0.74191	2	20423	20423;20654		0.30703	0.03801	1	3168399999.9999995	+		3968	15353	2081	2104	3887;3888	3887					0.1633327783376899
ARQVHIRRQRR	11	Unmodified	_ARQVHIRRQRR_					0	0	0			REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	492.634765625	3	492.634536	1474.88178	0.44862	0.000221	0.16515	8.136E-05	0.61377	0.00030236	492.6345306457638	53.84	2.6071	53.84	52.742	55.349	0					165	50	4	0	0	0	0.74191	1	20822	20822		0.45452	0.38125	1	1040799999.9999999	+		3969	15353	2081	2104	3889	3889					0.1633327783376899
ARQVHIRRQRR	11	Unmodified	_ARQVHIRRQRR_					0	0	0			REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	738.9488525390625	2	738.448166	1474.88178	0.93063	0.00068722	0.046078	3.4026E-05	0.97671	0.00072125	738.4480784381832	54.802	2.3964	54.479	52.838	55.234	-0.32349					106	45	4	0	0	0	0.74191	2	19927	19927;20418		0.30703	0.03801	1	71084000	+		3970	15353	2081	2104	3890;3891	3890					0.1633327783376899
ARQVHIRRQRR	11	Unmodified	_ARQVHIRRQRR_					0	0	0			REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	REV__ENST00000396426.7_1_22:42373013-42377694:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	492.63482666015625	3	492.634536	1474.88178	0.28054	0.0001382	0.21477	0.0001058	0.49531	0.00024401	492.63453352561993	54.802	2.2403	54.479	52.838	55.078	-0.32349					107	42	4	0	0	0	0.74191	1	20523	20523		0.45452	0.45452	1	41964000	+		3971	15353	2081	2104	3892	3892					0.1633327783376899
ARRKKRWRRAP	11	Unmodified	_ARRKKRWRRAP_					0	0	0			REV__ENST00000524666.5_1_11:65108438-65113200:+|nuORF	REV__ENST00000524666.5_1_11:65108438-65113200:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	740.9639892578125	2	740.963452	1479.91235	0.70136	0.00051968	0.51137	0.00037891	1.2127	0.00089859	741.465611060945	60.905	2.2762	60.905	60.284	62.56	0					101	43	3	0	0	0	0.74191	3	23755	23755;23885;24035		0	0	1	33790000	+		3972	12040	2082	2105	3893;3894;3895	3893					0.1915905621881393
ARRREERRKRF	11	Unmodified	_ARRREERRKRF_					0	0	0		nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP;ENSG00000133030|ENST00000651222|MPRIP	nc|ENSG00000133030|Q6WCQ1-3|MPRIP	nc|ENSG00000133030|Q6WCQ1-3|MPRIP	MULTI-MSMS	HCT116MG_D190212_S1	1	780.4597778320312	2	780.45873	1558.90291	0.94112	0.00073451	-0.029652	-2.3142E-05	0.91147	0.00071137	780.4586293211966	54.082	1.5313	54.082	53.462	54.994	0					53	29	3	0	0	0	0.74191	1	21003	21003		0	0	1	58398000			3973	3222	2083	2106	3896	3896					0.1458124314260658
ARSDKPIFTL	10	Unmodified	_ARSDKPIFTL_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	HCT116MG_D190212_S1	1	574.3267822265625	2	574.327131	1146.63971	0.45271	0.00026	0.20698	0.00011888	0.65969	0.00037888	574.327144485677	45.64	0.46999	45.64	45.295	45.765	0					17	8	3	0	0	0	0.011728	1	17279	17279		139.78	79.708	1	25655000			3974	3390	2084	2107	3897	3897					0.0722538991442434
ARSDKPIFTL	10	Unmodified	_ARSDKPIFTL_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	HCT116MG_D190212_S2	2	574.327392578125	2	574.327131	1146.63971	0.31451	0.00018063	-0.098256	-5.6431E-05	0.21626	0.0001242	574.3269798893311	45.546	0.4625	45.454	45.205	45.667	-0.092476					24	8	4	0	0	0	0.030673	1	17297	17297		101.54	49.275	1	240880000			3975	3390	2084	2107	3898	3898					0.0722538991442434
ARSDKPIFTL	10	Unmodified	_ARSDKPIFTL_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	HCT116MG_D190212_S3	3	574.3272705078125	2	574.327131	1146.63971	0.61615	0.00035387	0.02765	1.588E-05	0.6438	0.00036975	574.3270200897133	45.878	0.47209	45.567	45.305	45.777	-0.31094					20	9	3	0	0	0	0.011728	2	17161	17161;17253		139.78	61.054	1	48619000			3976	3390	2084	2107	3899;3900	3899					0.0722538991442434
ARSDKPIFTL	10	Unmodified	_ARSDKPIFTL_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	HCT116MG_D190212_S4	4	574.8287963867188	2	574.327131	1146.63971	0.55635	0.00031952	-0.14397	-8.2685E-05	0.41238	0.00023684	574.3270860060718	45.951	0.31601	45.579	45.398	45.714	-0.37206					12	7	2	0	0	0	0.016452	1	16964	16964		128.57	55.605	1	16522000			3977	3390	2084	2107	3901	3901					0.0722538991442434
ARSMQVIDL	9	Unmodified	_ARSMQVIDL_					0	0	0			REV__ENST00000475622.5_1_5:1462636-1462876:-|nuORF	REV__ENST00000475622.5_1_5:1462636-1462876:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	516.2802124023438	2	516.778959	1031.54336	0.29003	0.00014988	-4.0783	-0.0021076	-3.7883	-0.0019577	516.7764050609495	48.221	0.31288	47.905	47.775	48.088	-0.31596					7	4	2	0	0	0	0.23771	1	18099	18099		10.074	0	1	2649100	+		3978	15906	2085	2108	3902	3902					0.02885499082822207
ARTRLDVR	8	Unmodified	_ARTRLDVR_					0	0	0			REV__ENST00000563229.5_1_15:74281313-74286901:-|nuORF	REV__ENST00000563229.5_1_15:74281313-74286901:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7972717285156	2	493.796332	985.578111	0.39398	0.00019455	0.66529	0.00032852	1.0593	0.00052306	493.79688730939574	36.64	0.25853	36.525	36.343	36.602	-0.11478					7	4	2	0	0	0	0.79834	1	13738	13738		11.64	1.5664	1	15392000	+		3979	10728	2086	2109	3903	3903					0.08474503005800216
ARTRRKEPL	9	Unmodified	_ARTRRKEPL_					0	0	0			REV__ENST00000605833.1_1_10:17258248-17271432:-|nuORF	REV__ENST00000605833.1_1_10:17258248-17271432:-|nuORF	MSMS	HCT116MG_D190212_S3	3	376.2117919921875	3	376.231634	1125.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.544	1	56.26	55.76	56.76	-0.28367								0	0	0	0.7701	1	21468	21468		0.23584	0	1		+		3980	16766	2087	2110	3904	3904					0.11526436476992785
ARWRRWWWRRR	11	Unmodified	_ARWRRWWWRRR_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MSMS	HCT116MG_D190212_S2	2	590.9967041015625	3	590.997809	1769.9716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.67	1	28.348	27.848	28.848	-0.32232								0	0	0	0.96208	1	10468	10468		0	0	1				3981	7434	2088	2111	3905	3905					0.1174095223295808
ASALEKFFY	9	Unmodified	_ASALEKFFY_					0	0	0		ENST00000586972.1_1_17:40265669-40266402:-|nuORF;nc|ENSG00000108773|Q92830-2|KAT2A;ENSG00000108773|ENST00000225916|KAT2A	ENST00000586972.1_1_17:40265669-40266402:-|nuORF	ENST00000586972.1_1_17:40265669-40266402:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	537.777099609375	2	538.276575	1074.5386	0.48335	0.00026017	2.6523	0.0014277	3.1357	0.0016879	538.2777650945	54.518	0.20341	54.329	54.252	54.456	-0.1894					5	3	2	0	0	0	0.2212	1	21026	21026		17.443	11.237	1	23285000			3982	2180	2089	2112	3906	3906					0.004309382117071436
ASDAAPLQY	9	Unmodified	_ASDAAPLQY_					0	0	0		ENST00000586523.1_1_18:43667267-43667453:-|nuORF;nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A	ENST00000586523.1_1_18:43667267-43667453:-|nuORF	ENST00000586523.1_1_18:43667267-43667453:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	935.4464111328125	1	935.446888	934.439611	0.48154	0.00045045	-0.0025814	-2.4148E-06	0.47896	0.00044804	935.4467892418329	36.42	0.26002	36.119	35.989	36.249	-0.30113					7	4	2	0	0	0	0.0066233	1	13496	13496		123.45	27.166	1	3487500			3983	4141	2090	2113	3907	3907					-0.030230847531925065
ASDALDKIRY	10	Unmodified	_ASDALDKIRY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000282100|Q58FF6|HSP90AB4P;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S1	1	576.3065185546875	2	576.306395	1150.59824	0.53865	0.00031043	0.65102	0.00037518	1.1897	0.00068561	576.3064661328316	35.327	0.26048	35.327	35.163	35.424	0					6	4	2	0	0	0	0.0052575	1	13157	13157		166.77	84.24	1	8337500			3984	1617	2091	2114	3908	3908					0.02896209155096585
ASDALDKIRY	10	Unmodified	_ASDALDKIRY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000282100|Q58FF6|HSP90AB4P;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S2	2	576.3060913085938	2	576.306395	1150.59824	0.32893	0.00018957	-0.81614	-0.00047035	-0.48721	-0.00028078	576.3061884491595	35.307	0.29865	35.165	35.036	35.335	-0.14245					9	5	2	0	0	0	1.2126E-06	1	13172	13172		208.35	115.7	1	64578000			3985	1617	2091	2114	3909	3909					0.02896209155096585
ASDDFDQASY	10	Unmodified	_ASDDFDQASY_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1118.4266357421875	1	1118.42727	1117.42	0.34885	0.00039016	-0.048612	-5.4369E-05	0.30024	0.0003358	1118.4272214346709	34.368	0.26006	34.073	33.923	34.184	-0.2942					7	4	2	0	0	0	0.017298	1	12667	12667		126.57	82.708	1	3618400			3986	3888	2092	2115	3910	3910					-0.13401505554611504
ASDFITKMDY	10	Unmodified	_ASDFITKMDY_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	HCT116MG_D190212_S1	1	595.7737426757812	2	595.773539	1189.53253	0.44929	0.00026767	0.023305	1.3885E-05	0.47259	0.00028156	595.7733617707735	44.335	0.26814	44.335	44.195	44.464	0					10	4	3	0	0	0	0.0057099	1	16776	16776		165.58	116.03	1	21915000			3987	9497	2093	2116	3911	3911					-0.05465948082132854
ASDGPGPPGSP	11	Unmodified	_ASDGPGPPGSP_					0	0	0			REV__ENST00000395756.5_1_17:17718546-17719313:-|nuORF	REV__ENST00000395756.5_1_17:17718546-17719313:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	470.2481689453125	2	469.714339	937.414125	0.12344	5.7983E-05	0.19062	8.9536E-05	0.31406	0.00014752	469.71427476094595	20.329	1.2498	20.377	19.582	20.832	0.048107					59	23	3	0	0	0	0.32753	1	6742	6742		27.629	0	1	27240000	+		3988	15349	2094	2117	3912	3912					-0.05708559275603875
ASDGTVRL	8	Unmodified	_ASDGTVRL_					0	0	0		HNRNPH3|p.D12N|1|0.19|ENSG00000096746|chr10:68337255-68337255|G/A|missense_variant;ENST00000481819.5_1_10:70096921-70097125:+|nuORF;ENST00000461310.5_1_10:70091580-70098360:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	HNRNPH3|p.D12N|1|0.19|ENSG00000096746|chr10:68337255-68337255|G/A|missense_variant	HNRNPH3|p.D12N|1|0.19|ENSG00000096746|chr10:68337255-68337255|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	409.720947265625	2	409.721967	817.429381	-0.4726	-0.00019364	-1.0931	-0.00044787	-1.5657	-0.0006415	409.7214119500457	30.293	0.25693	30.009	29.873	30.13	-0.28453					6	4	2	0	0	0	0.064348	1	11152	11152		108	15.175	1	25627000			3989	1622	2095	2118	3913	3913					0.01336352312227973
ASDGTVRL	8	Unmodified	_ASDGTVRL_					0	0	0		HNRNPH3|p.D12N|1|0.19|ENSG00000096746|chr10:68337255-68337255|G/A|missense_variant;ENST00000481819.5_1_10:70096921-70097125:+|nuORF;ENST00000461310.5_1_10:70091580-70098360:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	HNRNPH3|p.D12N|1|0.19|ENSG00000096746|chr10:68337255-68337255|G/A|missense_variant	HNRNPH3|p.D12N|1|0.19|ENSG00000096746|chr10:68337255-68337255|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	409.72174072265625	2	409.721967	817.429381	0.016101	6.5968E-06	-0.18739	-7.6779E-05	-0.17129	-7.0182E-05	409.72165211334215	30.308	0.23329	30.058	29.913	30.147	-0.24946					8	5	2	0	0	0	0.038852	1	11055	11055		136.33	15.883	1	17589000			3990	1622	2095	2118	3914	3914					0.01336352312227973
ASDGTVRL	8	Unmodified	_ASDGTVRL_					0	0	0		HNRNPH3|p.D12N|1|0.19|ENSG00000096746|chr10:68337255-68337255|G/A|missense_variant;ENST00000481819.5_1_10:70096921-70097125:+|nuORF;ENST00000461310.5_1_10:70091580-70098360:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	HNRNPH3|p.D12N|1|0.19|ENSG00000096746|chr10:68337255-68337255|G/A|missense_variant	HNRNPH3|p.D12N|1|0.19|ENSG00000096746|chr10:68337255-68337255|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	409.72113037109375	2	409.721967	817.429381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.586	1	30.221	29.721	30.721	-0.36416								0	0	0	0.091106	1	11070	11070		85.272	14.138	1				3991	1622	2095	2118	3915	3915					0.01336352312227973
ASDHPIASY	9	Unmodified	_ASDHPIASY_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	480.72491455078125	2	480.724707	959.43486	0.15385	7.3962E-05	0.1614	7.7588E-05	0.31525	0.00015155	480.7245693297024	26.735	0.2604	26.735	26.553	26.813	0					7	4	2	0	0	0	0.027492	1	9682	9682		88.904	52.859	1	3913500			3992	6484	2096	2119	3916	3916					-0.0464796889596073
ASDHPIASY	9	Unmodified	_ASDHPIASY_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;PLEKHM1|p.E649Rfs*62|1|0.26|ENSG00000225190|chr17:45453908-45453908|G/-|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	480.7247619628906	2	480.724707	959.43486	0.32236	0.00015497	-0.39728	-0.00019098	-0.07492	-3.6016E-05	480.72451765791106	27.127	0.36872	26.775	26.606	26.975	-0.35254					9	6	2	0	0	0	0.063511	1	9862	9862		68.081	25.986	1	9665900			3993	6484	2096	2119	3917	3917					-0.0464796889596073
ASDIAKHVY	9	Unmodified	_ASDIAKHVY_					0	0	0		ENSG00000122042|ENST00000380680|UBL3	ENSG00000122042|ENST00000380680|UBL3	ENSG00000122042|ENST00000380680|UBL3	MULTI-MSMS	HCT116MG_D190212_S1	1	502.2640380859375	2	502.263999	1002.51345	0.40914	0.0002055	0.46	0.00023104	0.86914	0.00043654	502.263889093155	23.932	0.31343	23.932	23.784	24.098	0					8	5	2	0	0	0	0.014023	1	8563	8563		103.42	63.462	1	8721100			3994	2748	2097	2120	3918	3918					0.012288834091350509
ASDIAKHVY	9	Unmodified	_ASDIAKHVY_					0	0	0		ENSG00000122042|ENST00000380680|UBL3	ENSG00000122042|ENST00000380680|UBL3	ENSG00000122042|ENST00000380680|UBL3	MULTI-MSMS	HCT116MG_D190212_S2	2	502.26416015625	2	502.263999	1002.51345	0.58298	0.00029281	1.673	0.00084031	2.256	0.0011331	502.76649667813194	24.385	0.6254	24.005	23.718	24.344	-0.38003					23	11	4	0	0	0	0.0050238	2	8784	8741;8784		137.42	91.403	1	18884000			3995	2748	2097	2120	3919;3920	3920					0.012288834091350509
ASDKETYEL	9	Unmodified	_ASDKETYEL_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S1	1	528.248291015625	2	528.248212	1054.48187	0.50846	0.00026859	-0.34401	-0.00018172	0.16446	8.6873E-05	528.2478710761924	33.167	0.31107	33.167	32.985	33.296	0					13	5	3	0	0	0	0.051033	1	12286	12286		74.2	15.521	1	35907000			3996	4610	2098	2121	3921	3921					-0.04319154135487224
ASDKETYEL	9	Unmodified	_ASDKETYEL_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S2	2	528.2478637695312	2	528.248212	1054.48187	0.76367	0.00040341	-0.30638	-0.00016185	0.45729	0.00024156	528.2479569960582	33.443	0.41173	33.25	33.019	33.43	-0.19297					18	7	3	0	0	0	0.012531	1	12401	12401		107.1	32.171	1	130910000			3997	4610	2098	2121	3922	3922					-0.04319154135487224
ASDKETYEL	9	Unmodified	_ASDKETYEL_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S3	3	528.2481689453125	2	528.248212	1054.48187	0.44866	0.00023701	0.062568	3.3051E-05	0.51123	0.00027006	528.2483038947947	33.62	0.74182	33.33	32.925	33.667	-0.29013					27	16	3	0	0	0	0.026272	1	12353	12353		90.135	35.361	1	25493000			3998	4610	2098	2121	3923	3923					-0.04319154135487224
ASDKETYEL	9	Unmodified	_ASDKETYEL_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S4	4	528.2488403320312	2	528.248212	1054.48187	0.65901	0.00034812	0.021869	1.1552E-05	0.68088	0.00035967	528.2480739368272	33.669	0.40047	33.284	33.169	33.569	-0.38426					11	7	3	0	0	0	0.12421	1	12287	12287		53.404	21.099	1	3736100			3999	4610	2098	2121	3924	3924					-0.04319154135487224
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S1	1	687.8321533203125	2	687.830431	1373.64631	0.92201	0.00063419	0.083947	5.7741E-05	1.006	0.00069193	687.8304662229555	32.959	0.34649	32.959	32.742	33.089	0					16	6	4	0	0	0	9.8403E-31	1	12163	12163		261.67	189.74	1	75531000			4000	4610	2099	2122	3925	3925					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S1	1	458.8896484375	3	458.88938	1373.64631	0.28612	0.0001313	-0.07166	-3.2884E-05	0.21446	9.8412E-05	458.88940895638524	32.959	0.34695	32.959	32.794	33.141	0					17	6	4	0	0	0	3.8035E-05	1	12164	12164		129.22	110.37	1	52092000			4001	4610	2099	2122	3926	3926					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S2	2	687.6754760742188	2	687.830431	1373.64631	0.78143	0.00053749	0.25083	0.00017253	1.0323	0.00071002	687.8305520314062	33.082	0.46727	32.871	32.688	33.156	-0.21135					24	8	5	0	0	0	9.8403E-31	1	12226	12226		261.67	189.74	1	698340000			4002	4610	2099	2122	3927	3927					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S2	2	458.8894958496094	3	458.88938	1373.64631	0.42729	0.00019608	0.16226	7.4461E-05	0.58955	0.00027054	458.8894512179415	33.082	0.41588	32.871	32.688	33.104	-0.21135					20	7	4	0	0	0	3.0487E-05	1	12265	12265		133.02	104.79	1	321550000			4003	4610	2099	2122	3928	3928					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S3	3	687.831787109375	2	687.830431	1373.64631	1.005	0.00069127	-0.10336	-7.1095E-05	0.90164	0.00062017	687.8302333458774	33.343	0.31445	33.053	32.937	33.252	-0.29013					21	7	4	0	0	0	2.1207E-22	1	12213	12213		248.11	211.61	1	81087000			4004	4610	2099	2122	3929	3929					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S3	3	458.88970947265625	3	458.88938	1373.64631	0.49227	0.0002259	-0.0063009	-2.8914E-06	0.48597	0.00022301	458.88940917009666	33.352	0.31445	33.062	32.937	33.252	-0.29013					20	7	4	0	0	0	3.0487E-05	2	12224	12216;12224		133.02	109.68	1	52351000			4005	4610	2099	2122	3930;3931	3931					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S4	4	688.3316040039062	2	687.830431	1373.64631	0.99222	0.00068248	-0.44357	-0.0003051	0.54865	0.00037738	687.8300884939589	33.403	0.25063	33.021	32.92	33.171	-0.38223					19	9	3	0	0	0	8.1381E-41	1	12148	12148		275.67	245.83	1	22360000			4006	4610	2099	2122	3932	3932					-0.025567617155275002
ASDKETYELRY	11	Unmodified	_ASDKETYELRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	HCT116MG_D190212_S4	4	459.22344970703125	3	458.88938	1373.64631	0.42651	0.00019572	-0.13666	-6.271E-05	0.28985	0.00013301	458.88940799693506	33.401	0.25063	33.018	32.92	33.171	-0.38223					20	9	3	0	0	0	0.030786	1	12149	12149		99.318	84.494	1	17343000			4007	4610	2099	2122	3933	3933					-0.025567617155275002
ASDLSQPDLVY	11	Unmodified	_ASDLSQPDLVY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	HCT116MG_D190212_S2	2	604.3541870117188	2	604.295693	1206.57683	0.78182	0.00047245	-0.12489	-7.547E-05	0.65693	0.00039698	604.295358309991	45.185	0.41663	45.092	44.891	45.307	-0.092472					11	7	2	0	0	0	0.35292	1	17205	17205		15.248	10.351	1	13119000			4008	3433	2100	2123	3934	3934					-0.018192206642879682
ASDMKDMSKY	10	Unmodified	_ASDMKDMSKY_					0	0	0		ENST00000462123.5_1_1:115321747-115323144:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1	ENST00000462123.5_1_1:115321747-115323144:-|nuORF	ENST00000462123.5_1_1:115321747-115323144:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	588.2578125	2	588.257199	1174.49985	0.52697	0.00031	0.22666	0.00013333	0.75363	0.00044333	588.2572925204372	25.478	0.20933	25.109	24.978	25.187	-0.36914					6	3	2	0	0	0	0.53295	1	9189	9189		32.898	3.0572	1	10133000			4009	1060	2101	2124	3935	3935					-0.08042478476613724
ASDMLQLEY	9	Unmodified	_ASDMLQLEY_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1069.48583984375	1	1069.48704	1068.47976	0.59959	0.00064125	-0.66887	-0.00071535	-0.069282	-7.4096E-05	1069.4861558530788	51.465	0.20033	51.465	51.349	51.549	0					5	3	2	0	0	0	0.031089	1	19689	19689		85.272	33.004	1	29208000			4010	2709	2102	2125	3936	3936					-0.05173906144932516
ASDMLQLEY	9	Unmodified	_ASDMLQLEY_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1069.4866943359375	1	1069.48704	1068.47976	0.5814	0.0006218	-0.45443	-0.00048601	0.12697	0.00013579	1069.4861450590342	51.69	0.35888	51.507	51.373	51.732	-0.18369					14	6	3	0	0	0	0.031089	1	19862	19862		85.272	30.498	1	45674000			4011	2709	2102	2125	3937	3937					-0.05173906144932516
ASDMLQLEY	9	Unmodified	_ASDMLQLEY_					0	0	0		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1069.4874267578125	1	1069.48704	1068.47976	0.51267	0.00054829	-0.23929	-0.00025591	0.27338	0.00029238	1069.4869457183283	51.877	0.30609	51.567	51.384	51.69	-0.30927					9	5	3	0	0	0	0.031089	1	19602	19602		85.272	30.498	1	14359000			4012	2709	2102	2125	3938	3938					-0.05173906144932516
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_		ASDM(1)LQLEY		ASDM(79)LQLEY	0	0	1		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	543.2446899414062	2	543.244615	1084.47468	0.55713	0.00030266	-0.22064	-0.00011986	0.33648	0.00018279	543.2443710928422	45.081	0.3127	44.772	44.628	44.941	-0.30927					10	5	2	0	0	0	0.041798	1	16881	16881		78.728	21.257	1	4984500			4013	2709	2102	2126	3939	3939		54			-0.06418210007564085
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_		ASDM(1)LQLEY		ASDM(52)LQLEY	0	0	1		KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.51|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	543.2452392578125	2	543.244615	1084.47468	0.51309	0.00027874	-0.01742	-9.4635E-06	0.49567	0.00026927	543.2446135479381	45.214	0.34975	44.841	44.586	44.936	-0.37266					9	7	2	0	0	0	0.13316	1	16682	16682		51.63	11.672	1	3498600			4014	2709	2102	2126	3940	3940		54			-0.06418210007564085
ASDNTGRYAY	10	Unmodified	_ASDNTGRYAY_					0	0	0		ENST00000492092.1_1_22:50644878-50655786:+|nuORF;ENST00000380903.6_1_22:50639465-50655786:+|nuORF;ENSG00000073169|ENST00000380903|SELENOO	ENST00000492092.1_1_22:50644878-50655786:+|nuORF	ENST00000492092.1_1_22:50644878-50655786:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	559.2494506835938	2	559.249077	1116.4836	0.56194	0.00031426	0.2565	0.00014345	0.81844	0.00045771	559.2493624796784	24.49	0.26107	24.49	24.36	24.621	0					5	4	2	0	0	0	0.70908	1	8804	8804		19.626	7.9857	1	3739400			4015	1284	2103	2127	3941	3941					-0.0699810032683672
ASDNTGRYAY	10	Unmodified	_ASDNTGRYAY_					0	0	0		ENST00000492092.1_1_22:50644878-50655786:+|nuORF;ENST00000380903.6_1_22:50639465-50655786:+|nuORF;ENSG00000073169|ENST00000380903|SELENOO	ENST00000492092.1_1_22:50644878-50655786:+|nuORF	ENST00000492092.1_1_22:50644878-50655786:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	559.2493286132812	2	559.249077	1116.4836	0.44418	0.00024841	-0.01943	-1.0866E-05	0.42475	0.00023754	559.2487939289653	24.96	0.15552	24.585	24.504	24.66	-0.37521					6	2	3	0	0	0	0.24695	1	8995	8995		55.235	27.606	1	14470000			4016	1284	2103	2127	3942	3942					-0.0699810032683672
ASDPDEAKL	9	Unmodified	_ASDPDEAKL_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2297058105469	2	473.229822	944.445091	0.52329	0.00024764	0.025691	1.2158E-05	0.54898	0.0002598	473.2297202744022	26.101	0.25996	25.74	25.61	25.87	-0.36164					7	4	2	0	0	0	0.012596	1	9432	9432		106.94	41.705	1	23677000			4017	5471	2104	2128	3943	3943					-0.029354059613751815
ASDPDEAKL	9	Unmodified	_ASDPDEAKL_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2303161621094	2	473.229822	944.445091	0.32549	0.00015403	0.27953	0.00013228	0.60502	0.00028631	473.22990524323984	25.84	0.20852	25.712	25.546	25.755	-0.12795					6	3	2	0	0	0	0.27446	1	9256	9256		33.445	1.1394	1	4988900			4018	5471	2104	2128	3944	3944					-0.029354059613751815
ASDPFFRHY	9	Unmodified	_ASDPFFRHY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	570.2664184570312	2	570.267073	1138.51959	-0.36029	-0.00020546	-0.050012	-2.852E-05	-0.4103	-0.00023398	570.2669090803759	38.498	0.36494	38.498	38.279	38.644	0					15	6	3	0	0	0	0.0034297	1	14402	14402		191.38	123.3	1	36340000			4019	3774	2105	2129	3945	3945					-0.04412598359340336
ASDPFFRHY	9	Unmodified	_ASDPFFRHY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	380.8475646972656	3	380.513807	1138.51959	-0.81769	-0.00031114	-0.2261	-8.6034E-05	-1.0438	-0.00039718	380.51372168761	38.476	0.31293	38.476	38.279	38.592	0					13	5	3	0	0	0	0.10244	1	14410	14410		57.722	57.722	1	19726000			4020	3774	2105	2129	3946	3946					-0.04412598359340336
ASDPFFRHY	9	Unmodified	_ASDPFFRHY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	570.2673950195312	2	570.267073	1138.51959	0.33579	0.00019149	0.26784	0.00015274	0.60364	0.00034423	570.2670409436784	38.498	0.42237	38.413	38.175	38.597	-0.084618					24	7	4	0	0	0	0.004234	1	14452	14452		176.84	176.84	1	137450000			4021	3774	2105	2129	3947	3947					-0.04412598359340336
ASDPFFRHY	9	Unmodified	_ASDPFFRHY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	380.5138244628906	3	380.513807	1138.51959	-0.21188	-8.0623E-05	0.16389	6.2361E-05	-0.047993	-1.8262E-05	380.51384878809097	38.492	0.4755	38.408	38.175	38.65	-0.084618					13	8	2	0	0	0	0.05892	1	14463	14463		70.332	70.332	1	69666000			4022	3774	2105	2129	3948	3948					-0.04412598359340336
ASDPFFRHY	9	Unmodified	_ASDPFFRHY_					0	0	0		ENST00000477418.2_1_1:27206170-27212721:-|nuORF;ENSG00000142751|ENST00000374135|GPN2	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	570.267073	1138.51959	0.32501	0.00018534	0.63471	0.00036195	0.95972	0.0005473	570.2671071088236	38.746	0.20838	38.445	38.3	38.508	-0.30137	-0.0071798	0.00054386	NaN	191.38	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1175400			4023	3774	2105	2129							-0.04412598359340336
ASDPGTATF	9	Unmodified	_ASDPGTATF_					0	0	0		nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	nc|ENSG00000008441|Q14938-6|NFIX	MULTI-MSMS	HCT116MG_D190212_S2	2	866.388916015625	1	866.389039	865.381762	1.0515	0.00091101	-0.025948	-2.2481E-05	1.0256	0.00088853	866.3889894324616	33.011	0.36265	32.799	32.638	33	-0.21135					9	6	2	0	0	0	0.0054498	1	12245	12245		133.7	73.312	1	38084000			4024	9366	2106	2130	3949	3949					-0.05631346678603677
ASDPYQVHV	9	Unmodified	_ASDPYQVHV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	HCT116MG_D190212_S1	1	508.2461853027344	2	508.245806	1014.47706	0.48284	0.0002454	0.62275	0.00031651	1.1056	0.00056191	508.24612312904765	35.09	0.41072	35.09	34.857	35.267	0					19	7	3	0	0	0	0.0090481	1	13023	13023		115.69	34.079	1	69137000			4025	1025	2107	2131	3950	3950					-0.029599934875591316
ASDPYQVHV	9	Unmodified	_ASDPYQVHV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2460021972656	2	508.245806	1014.47706	0.37972	0.00019299	0.0008954	4.5508E-07	0.38062	0.00019345	508.2457526997019	35.153	0.41338	34.994	34.761	35.174	-0.15834					23	7	4	0	0	0	0.012168	1	13072	13072		108	36.075	1	367770000			4026	1025	2107	2131	3951	3951					-0.029599934875591316
ASDPYQVHV	9	Unmodified	_ASDPYQVHV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	HCT116MG_D190212_S2	2	1015.4841918945312	1	1015.48434	1014.47706	0.72164	0.00073281	0.89158	0.00090538	1.6132	0.0016382	1015.4842840277902	35.153	0.31014	34.994	34.813	35.123	-0.15834					11	5	3	0	0	0	0.0034607	1	13113	13113		163.04	94.955	1	37732000			4027	1025	2107	2131	3952	3952					-0.029599934875591316
ASDPYQVHV	9	Unmodified	_ASDPYQVHV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	HCT116MG_D190212_S3	3	508.2461853027344	2	508.245806	1014.47706	0.56677	0.00028806	0.39808	0.00020232	0.96484	0.00049038	508.24607958457096	35.354	0.41499	35.054	34.801	35.216	-0.29922					25	16	3	0	0	0	0.020181	1	13035	13035		96.285	33.712	1	65130000			4028	1025	2107	2131	3953	3953					-0.029599934875591316
ASDPYQVHV	9	Unmodified	_ASDPYQVHV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MSMS	HCT116MG_D190212_S4	4	508.24664306640625	2	508.245806	1014.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.509	1	35.123	34.623	35.623	-0.38606								0	0	0	0.05792	1	12996	12996		68.081	15.812	1				4029	1025	2107	2131	3954	3954					-0.029599934875591316
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S1	1	525.78271484375	2	525.782556	1049.55056	0.15839	8.3276E-05	0.16073	8.4509E-05	0.31912	0.00016779	525.7827021837189	39.729	0.67571	39.729	39.501	40.176	0					40	12	5	0	0	0	0.035298	1	14894	14894		99.755	41.076	1	1126100000			4030	4733	2108	2132	3955	3955					0.027765549549030766
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S1	1	1050.5589599609375	1	1050.55784	1049.55056	0.62109	0.00065249	0.23689	0.00024886	0.85798	0.00090136	1050.558035082895	39.683	0.36416	39.683	39.553	39.917	0					18	6	4	0	0	0	0.0064513	1	14901	14901		149.91	84.679	1	88351000			4031	4733	2108	2132	3956	3956					0.027765549549030766
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S2	2	525.782958984375	2	525.782556	1049.55056	0.2778	0.00014606	-0.19195	-0.00010093	0.085846	4.5136E-05	525.7825278277782	39.632	1.5479	39.554	39.428	40.976	-0.077835					76	29	5	0	0	0	0.025331	3	14923	14923;15185;15224		99.755	41.076	1	5059200000			4032	4733	2108	2132	3957;3958;3959	3957					0.027765549549030766
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S2	2	1050.5584716796875	1	1050.55784	1049.55056	0.53087	0.00055771	-0.076318	-8.0176E-05	0.45456	0.00047754	1050.5576317308628	39.677	0.66862	39.599	39.428	40.097	-0.077835					34	12	4	0	0	0	0.0052024	1	14924	14924		163.04	91.902	1	587400000			4033	4733	2108	2132	3960	3960					0.027765549549030766
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S3	3	526.2833251953125	2	525.782556	1049.55056	0.23118	0.00012155	0.094463	4.9667E-05	0.32564	0.00017122	525.7826212277145	40.023	0.91805	39.721	39.558	40.476	-0.30137					64	22	5	0	0	0	0.053079	3	14800	14800;15037;15064		89.401	26.828	1	1001199999.9999999			4034	4733	2108	2132	3961;3962;3963	3961					0.027765549549030766
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S3	3	1050.55859375	1	1050.55784	1049.55056	0.4402	0.00046246	-5.307E-05	-5.5754E-08	0.44015	0.0004624	1050.5579417604076	40.023	0.30811	39.721	39.595	39.903	-0.30137					19	8	3	0	0	0	0.0064513	1	14829	14829		149.91	88.556	1	50997000			4035	4733	2108	2132	3964	3964					0.027765549549030766
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S4	4	525.783203125	2	525.782556	1049.55056	0.43387	0.00022812	-0.021015	-1.105E-05	0.41286	0.00021707	525.7825356048701	40.169	0.59289	39.79	39.588	40.181	-0.37936					47	14	5	0	0	0	0.10554	1	14680	14680		70.332	34.288	1	213580000			4036	4733	2108	2132	3965	3965					0.027765549549030766
ASDRNIVLY	9	Unmodified	_ASDRNIVLY_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S4	4	1050.5572509765625	1	1050.55784	1049.55056	0.62933	0.00066115	-0.25543	-0.00026835	0.3739	0.0003928	1050.557184258281	40.141	0.34358	39.761	39.643	39.987	-0.37936					13	8	2	0	0	0	0.0095327	1	14715	14715		137.42	76.066	1	10186000			4037	4733	2108	2132	3966	3966					0.027765549549030766
ASDYFDQLY	9	Unmodified	_ASDYFDQLY_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	1121.4840087890625	1	1121.47858	1120.47131	0.56334	0.00063178	0.51437	0.00057685	1.0777	0.0012086	1121.4794432914018	53.087	0.20912	52.784	52.669	52.878	-0.30304					6	3	2	0	0	0	0.027492	1	20109	20109		88.904	38.049	1	2298100			4038	5232	2109	2133	3967	3967					-0.08411136789891316
ASEASRLAHY	10	Unmodified	_ASEASRLAHY_					0	0	0		ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000146047|ENST00000274764|H2BC1;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	ENSG00000196890|ENST00000693095|H2BC26	ENSG00000196890|ENST00000693095|H2BC26	MULTI-MSMS	HCT116MG_D190212_S1	1	552.7755126953125	2	552.775262	1103.53597	0.34148	0.00018876	0.23384	0.00012926	0.57532	0.00031802	552.7753093358862	25.327	0.46921	25.327	25.092	25.561	0					17	8	4	0	0	0	1.3017E-10	1	9106	9106		218.2	121.91	1	41132000			4039	3936	2110	2134	3968	3968					-0.011655171932488884
ASEASRLAHY	10	Unmodified	_ASEASRLAHY_					0	0	0		ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000146047|ENST00000274764|H2BC1;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	ENSG00000196890|ENST00000693095|H2BC26	ENSG00000196890|ENST00000693095|H2BC26	MULTI-MSMS	HCT116MG_D190212_S1	1	368.8524169921875	3	368.8526	1103.53597	-0.2514	-9.2729E-05	-0.20327	-7.4977E-05	-0.45467	-0.00016771	368.8524746080319	25.327	0.31223	25.327	25.197	25.509	0					8	5	2	0	0	0	0.15126	1	9112	9112		48.073	22.052	1	13091000			4040	3936	2110	2134	3969	3969					-0.011655171932488884
ASEASRLAHY	10	Unmodified	_ASEASRLAHY_					0	0	0		ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000146047|ENST00000274764|H2BC1;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	ENSG00000196890|ENST00000693095|H2BC26	ENSG00000196890|ENST00000693095|H2BC26	MULTI-MSMS	HCT116MG_D190212_S2	2	552.7755737304688	2	552.775262	1103.53597	0.3647	0.0002016	0.31339	0.00017323	0.67809	0.00037483	552.7753479791489	25.79	0.31073	25.42	25.239	25.55	-0.36914					17	5	4	0	0	0	6.7757E-11	1	9303	9303		226.55	130.27	1	172320000			4041	3936	2110	2134	3970	3970					-0.011655171932488884
ASEASRLAHY	10	Unmodified	_ASEASRLAHY_					0	0	0		ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000146047|ENST00000274764|H2BC1;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	ENSG00000196890|ENST00000693095|H2BC26	ENSG00000196890|ENST00000693095|H2BC26	MULTI-MSMS	HCT116MG_D190212_S2	2	368.8525085449219	3	368.8526	1103.53597	-0.21555	-7.9507E-05	0.02618	9.6564E-06	-0.18937	-6.985E-05	368.8524959748226	25.785	0.25874	25.416	25.291	25.55	-0.36914					9	4	3	0	0	0	0.047039	1	9309	9309		68.76	38.056	1	29895000			4042	3936	2110	2134	3971	3971					-0.011655171932488884
ASEDSVLLY	9	Unmodified	_ASEDSVLLY_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	HCT116MG_D190212_S1	1	996.4869384765625	1	996.488418	995.481142	0.59683	0.00059473	-0.7933	-0.00079052	-0.19647	-0.00019578	996.4870504252854	49	0.25939	49	48.819	49.079	0					9	4	3	0	0	0	0.050578	1	18668	18668		74.423	23.568	1	22872000			4043	4408	2111	2135	3972	3972					-0.016779487845155927
ASEDSVLLY	9	Unmodified	_ASEDSVLLY_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	HCT116MG_D190212_S2	2	996.488525390625	1	996.488418	995.481142	0.55264	0.0005507	0.13037	0.00012991	0.68301	0.00068061	996.4883543851074	49.114	0.40412	48.96	48.783	49.187	-0.15405					10	7	2	0	0	0	0.050578	1	18777	18777		74.423	26.077	1	114840000			4044	4408	2111	2135	3973	3973					-0.016779487845155927
ASEDSVLLY	9	Unmodified	_ASEDSVLLY_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	HCT116MG_D190212_S3	3	996.4888305664062	1	996.488418	995.481142	0.49527	0.00049353	0.20211	0.0002014	0.69738	0.00069493	996.4884351372426	49.323	0.47253	49.007	48.816	49.289	-0.31596					22	8	4	0	0	0	0.050578	1	18555	18555		74.423	26.077	1	61036000			4045	4408	2111	2135	3974	3974					-0.016779487845155927
ASEDSVLLY	9	Unmodified	_ASEDSVLLY_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	HCT116MG_D190212_S4	4	996.4881591796875	1	996.488418	995.481142	0.45455	0.00045296	0.12827	0.00012782	0.58282	0.00058078	996.4879567525131	49.398	0.3485	49.036	48.869	49.218	-0.36213					15	6	3	0	0	0	0.019399	1	18309	18309		97.075	46.22	1	15172000			4046	4408	2111	2135	3975	3975					-0.016779487845155927
ASEFGNHYLY	10	Unmodified	_ASEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	HCT116MG_D190212_S1	1	600.76953125	2	600.769645	1199.52474	0.50879	0.00030567	0.27487	0.00016513	0.78366	0.0004708	600.7698695661694	42.045	0.20883	42.045	41.914	42.123	0					6	3	2	0	0	0	0.0066829	1	15860	15860		163.04	107.53	1	27854000			4047	6018	2112	2136	3976	3976					-0.0670433928737566
ASEFGNHYLY	10	Unmodified	_ASEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	HCT116MG_D190212_S2	2	600.7697143554688	2	600.769645	1199.52474	0.72763	0.00043714	-0.36113	-0.00021696	0.3665	0.00022018	600.7694162800032	41.956	0.31105	41.888	41.705	42.016	-0.068199					17	5	4	0	0	0	0.0066829	2	15869	15869;15903		163.04	115.44	1	100840000			4048	6018	2112	2136	3977;3978	3977					-0.0670433928737566
ASEFGNHYLY	10	Unmodified	_ASEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MATCH	HCT116MG_D190212_S3	3		2	600.769645	1199.52474	0.64486	0.00038741	0.055105	3.3105E-05	0.69996	0.00042052	601.2710180961906	42.317	0.15613	42.013	41.883	42.04	-0.30352	0.031265	0.00043075	NaN	163.04	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2277800			4049	6018	2112	2136							-0.0670433928737566
ASEFPGAQHY	10	Unmodified	_ASEFPGAQHY_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;ENST00000566509.5_1_15:73052730-73067416:-|nuORF	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	HCT116MG_D190212_S1	1	553.7490844726562	2	553.748713	1105.48287	0.31673	0.00017539	0.048633	2.6931E-05	0.36536	0.00020232	553.7487910192334	32.212	0.72964	32.212	31.857	32.587	0					31	13	3	0	0	0	0.017298	2	11804	11804;11906		126.57	80.545	1	24209000			4050	4409	2113	2137	3979;3980	3979					-0.06564894975895186
ASEFPGAQHY	10	Unmodified	_ASEFPGAQHY_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;ENST00000566509.5_1_15:73052730-73067416:-|nuORF	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7488403320312	2	553.748713	1105.48287	0.24988	0.00013837	0.10309	5.7088E-05	0.35298	0.00019546	553.7487505610953	32.392	0.8323	32.162	31.787	32.619	-0.23009					48	15	5	0	0	0	0.017298	1	11932	11932		126.57	80.545	1	101280000			4051	4409	2113	2137	3981	3981					-0.06564894975895186
ASEFPGAQHY	10	Unmodified	_ASEFPGAQHY_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;ENST00000566509.5_1_15:73052730-73067416:-|nuORF	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	HCT116MG_D190212_S2	2	1106.4893798828125	1	1106.49015	1105.48287	0.50838	0.00056251	0.010191	1.1276E-05	0.51857	0.00057379	1106.4900461459833	32.423	0.41632	32.192	31.942	32.359	-0.23009					13	7	2	0	0	0	0.00045417	1	12009	12009		187.3	137.36	1	11456000			4052	4409	2113	2137	3982	3982					-0.06564894975895186
ASEFPGAQHY	10	Unmodified	_ASEFPGAQHY_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;ENST00000566509.5_1_15:73052730-73067416:-|nuORF	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	HCT116MG_D190212_S3	3	553.7490234375	2	553.748713	1105.48287	0.48085	0.00026627	-0.10626	-5.8841E-05	0.37459	0.00020743	553.7486617770445	32.507	0.78115	32.228	31.89	32.671	-0.27841					34	14	3	0	0	0	0.029414	1	11878	11878		103.35	59.495	1	20931000			4053	4409	2113	2137	3983	3983					-0.06564894975895186
ASEFPGAQHY	10	Unmodified	_ASEFPGAQHY_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;ENST00000566509.5_1_15:73052730-73067416:-|nuORF	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	HCT116MG_D190212_S4	4	553.7489013671875	2	553.748713	1105.48287	0.43957	0.00024341	-0.21809	-0.00012077	0.22147	0.00012264	553.7486088703378	32.527	0.51914	32.147	31.949	32.468	-0.37923					16	9	2	0	0	0	0.057153	2	11855	11855;11964		82.529	50.224	1	5077500			4054	4409	2113	2137	3984;3985	3984					-0.06564894975895186
ASEIAVGHQY	10	Unmodified	_ASEIAVGHQY_					0	0	0		nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-MSMS	HCT116MG_D190212_S1	1	537.7645874023438	2	537.764363	1073.51417	0.69936	0.00037609	-0.22599	-0.00012153	0.47337	0.00025456	537.7643239367636	28.839	0.26157	28.839	28.641	28.903	0					6	4	2	0	0	0	0.055088	1	10542	10542		83.429	33.496	1	6477700			4055	2882	2114	2138	3986	3986					-0.01964321941795788
ASEIAVGHQY	10	Unmodified	_ASEIAVGHQY_					0	0	0		nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-MATCH	HCT116MG_D190212_S3	3		2	537.764363	1073.51417	0.70252	0.00037779	-0.74486	-0.00040056	-0.042337	-2.2767E-05	537.7637114029483	28.669	0.20813	28.463	28.333	28.541	-0.20593	-0.18802	-0.00033464	NaN	83.429	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7125400			4056	2882	2114	2138							-0.01964321941795788
ASEKDAAAMES	11	Unmodified	_ASEKDAAAMES_					0	0	0		ENST00000531257.1_1_11:126143236-126143371:+|nuORF;ENST00000534011.5_1_11:126142574-126144844:+|nuORF;ENST00000533395.5_1_11:126143098-126145243:+|nuORF;ENST00000527875.1_1_11:126143098-126144951:+|nuORF;ENST00000534315.5_1_11:126141345-126145243:+|nuORF;nc|ENSG00000110074|Q96CU9-3|FOXRED1;ENSG00000110074|ENST00000263578|FOXRED1	ENST00000531257.1_1_11:126143236-126143371:+|nuORF	ENST00000531257.1_1_11:126143236-126143371:+|nuORF	MSMS	HCT116MG_D190212_S1	1	555.2452392578125	2	555.242603	1108.47065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.076	1	32.076	31.576	32.576	0								0	0	0	0.92235	1	11824	11824		17.113	2.2746	1				4057	2232	2115	2139	3987	3987					-0.07924299501269161
ASEKHQHMY	9	Oxidation (M)	_ASEKHQHM(Oxidation (M))Y_		ASEKHQHM(1)Y		ASEKHQHM(150)Y	0	0	1		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S1	1	573.7537231445312	2	573.753472	1145.49239	0.45782	0.00026267	0.018947	1.0871E-05	0.47676	0.00027355	573.7534618424742	14.46	0.26022	14.46	14.286	14.546	0					12	4	4	0	0	0	0.0038512	1	4739	4739		152.89	120.1	1	8385800			4058	2235	2116	2140	3988	3988		45			-0.074534499620313
ASEKHQHMY	9	Unmodified	_ASEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S1	1	565.7561645507812	2	565.756015	1129.49748	0.32872	0.00018598	-0.22176	-0.00012546	0.10696	6.0515E-05	565.7560604700523	16.291	0.46851	16.291	16.109	16.577	0					27	8	6	0	0	0	0.0034865	1	5473	5473		165.72	116.17	1	253280000			4059	2235	2116	2141	3989	3989					-0.06209146099422469
ASEKHQHMY	9	Unmodified	_ASEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S1	1	377.5063171386719	3	377.506436	1129.49748	-0.1565	-5.9081E-05	-0.19779	-7.4668E-05	-0.35429	-0.00013375	377.50639188516277	16.291	0.36439	16.291	16.109	16.473	0					16	6	4	0	0	0	0.034046	1	5474	5474		67.081	46.627	1	133510000			4060	2235	2116	2141	3990	3990					-0.06209146099422469
ASEKHQHMY	9	Unmodified	_ASEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S2	2	377.50640869140625	3	377.506436	1129.49748	-0.30958	-0.00011687	0.14932	5.6368E-05	-0.16026	-6.0501E-05	377.50641993563266	12.258	0.34383	11.969	11.854	12.198	-0.28953					34	16	4	0	0	0	0.1754	1	3997	3997		47.594	47.594	1	7594300			4061	2235	2116	2141	3991	3991					-0.06209146099422469
ASEKHQHMY	9	Unmodified	_ASEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S2	2	565.7559814453125	2	565.756015	1129.49748	0.30678	0.00017356	0.033368	1.8878E-05	0.34015	0.00019244	565.7560546716528	12.273	0.27053	11.983	11.854	12.124	-0.28953					29	11	4	0	0	0	0.0050238	1	3998	3998		137.42	137.42	1	4503200			4062	2235	2116	2141	3992	3992					-0.06209146099422469
ASEKHQHMY	9	Unmodified	_ASEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S2	2	377.5063171386719	3	377.506436	1129.49748	-0.15039	-5.6775E-05	0.043533	1.6434E-05	-0.10686	-4.0341E-05	377.506433536001	16.884	0.5203	16.543	16.308	16.828	-0.34183					21	9	3	0	0	0	0.053544	2	5714	5640;5714		59.052	45.438	1	157970000			4063	2235	2116	2141	3993;3994	3994					-0.06209146099422469
ASEKHQHMY	9	Unmodified	_ASEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S2	2	565.7557373046875	2	565.756015	1129.49748	0.46574	0.00026349	-0.28652	-0.0001621	0.17922	0.00010139	565.7560041829147	16.884	1.0418	16.543	15.943	16.985	-0.34183					45	19	5	0	0	0	0.0201	1	5647	5647		96.367	64.061	1	525180000			4064	2235	2116	2141	3995	3995					-0.06209146099422469
ASEKHQHMY	9	Unmodified	_ASEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S2	2	1130.5054931640625	1	1130.50475	1129.49748	0.6099	0.00068949	-0.35751	-0.00040416	0.25239	0.00028533	1130.5045395531436	16.884	0.20788	16.543	16.412	16.62	-0.34183					6	3	2	0	0	0	0.011132	1	5734	5734		110.55	82.066	1	13928000			4065	2235	2116	2141	3996	3996					-0.06209146099422469
ASEKHQHMY	9	Unmodified	_ASEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1130.50475	1129.49748	0.56877	0.000643	-0.41245	-0.00046627	0.15632	0.00017673	1130.5047537550188	16.291	0.15615	16.291	16.161	16.317	0	-0.12587	-5.1165E-05	NaN	110.55	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1571200			4066	2235	2116	2141							-0.06209146099422469
ASELKALGY	9	Unmodified	_ASELKALGY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S1	1	476.26092529296875	2	476.260925	950.507297	-0.15013	-7.1502E-05	0.25042	0.00011926	0.10028	4.7761E-05	476.2609312248972	38.877	0.25888	38.877	38.696	38.955	0					6	4	2	0	0	0	0.0063854	1	14591	14591		125.53	47.38	1	29725000			4067	5408	2117	2142	3997	3997					0.030063651776117695
ASELKALGY	9	Unmodified	_ASELKALGY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S2	2	476.2607116699219	2	476.260925	950.507297	0.20373	9.7029E-05	-0.11253	-5.3596E-05	0.091197	4.3433E-05	476.2607213715912	38.895	0.31162	38.811	38.597	38.909	-0.084618					11	5	3	0	0	0	0.0040527	1	14617	14617		149.91	49.542	1	83036000			4068	5408	2117	2142	3998	3998					0.030063651776117695
ASELKALGY	9	Unmodified	_ASELKALGY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S2	2	951.5153198242188	1	951.514573	950.507297	0.61065	0.00058105	-0.47264	-0.00044972	0.13802	0.00013133	951.5147353572532	38.864	0.20671	38.78	38.65	38.857	-0.084618					5	3	2	0	0	0	0.0050238	1	14631	14631		137.42	34.07	1	40625000			4069	5408	2117	2142	3999	3999					0.030063651776117695
ASELKALGY	9	Unmodified	_ASELKALGY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S3	3	476.2606201171875	2	476.260925	950.507297	0.19561	9.3159E-05	-0.6851	-0.00032628	-0.48949	-0.00023312	476.2606605238656	39.106	0.20794	38.805	38.716	38.924	-0.30137					7	3	3	0	0	0	0.05892	1	14533	14533		70.332	20.399	1	7424600			4070	5408	2117	2142	4000	4000					0.030063651776117695
ASEPAELHVSY	11	Unmodified	_ASEPAELHVSY_					0	0	0		nc|ENSG00000124159|O95460-3|MATN4;nc|ENSG00000124159|O95460-4|MATN4;ENSG00000124159|ENST00000372756|MATN4;nc|ENSG00000124159|O95460|MATN4	nc|ENSG00000124159|O95460-3|MATN4	nc|ENSG00000124159|O95460-3|MATN4	MULTI-MSMS	HCT116MG_D190212_S3	3	602.2899780273438	2	601.788035	1201.56152	0.62112	0.00037378	0.0036237	2.1807E-06	0.62474	0.00037596	601.7879908676964	33.416	0.8982	33.126	32.925	33.823	-0.29013					35	19	2	0	0	0	0.71271	1	12233	12233		17.113	3.2068	1	6474200			4071	2828	2118	2143	4001	4001					-0.031200874614796703
ASEPSAQLSY	10	Unmodified	_ASEPSAQLSY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7487182617188	2	526.748379	1051.4822	0.58911	0.00031031	-0.31274	-0.00016474	0.27637	0.00014558	526.7484153030152	34.769	0.8801	34.61	34.14	35.02	-0.15834					25	16	2	0	0	0	0.50387	1	12904	12904		34.932	2.6266	1	15290000			4072	3148	2119	2144	4002	4002					-0.0414773441559646
ASEPSAQLSY	10	Unmodified	_ASEPSAQLSY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	HCT116MG_D190212_S2	2	1052.490234375	1	1052.48948	1051.4822	0.83159	0.00087524	0.19098	0.000201	1.0226	0.0010762	1052.4894759124215	34.738	0.67262	34.58	34.192	34.865	-0.15834					21	12	2	0	0	0	0.019498	1	12907	12907		121.35	31.945	1	16618000			4073	3148	2119	2144	4003	4003					-0.0414773441559646
ASEQDILKY	9	Unmodified	_ASEQDILKY_					0	0	0		nc|ENSG00000011114|Q9P203-5|BTBD7;ENSG00000011114|ENST00000334746|BTBD7;ENST00000554644.1_1_14:93723510-93760888:-|nuORF;BTBD7|p.N566Mfs*22|1|0.26|ENSG00000011114|chr14:93253702-93253702|T/-|frameshift_variant;BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant;BTBD7|p.P760Lfs*61|1|0.45|ENSG00000011114|chr14:93246129-93246129|G/-|frameshift_variant;BTBD7|p.H927Tfs*21|1|0.2|ENSG00000011114|chr14:93242893-93242894|-/T|frameshift_variant	nc|ENSG00000011114|Q9P203-5|BTBD7	nc|ENSG00000011114|Q9P203-5|BTBD7	MSMS	HCT116MG_D190212_S2	2	533.774658203125	2	533.774396	1065.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.817	1	38.733	38.233	39.233	-0.084618								0	0	0	0.088354	1	14590	14590		59.368	34.377	1				4074	886	2120	2145	4004	4004					0.004094289981367183
ASETAGSGFLY	11	Unmodified	_ASETAGSGFLY_					0	0	0		ENST00000587651.1_1_17:58296950-58303472:-|nuORF;USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1102.5052490234375	1	1102.50513	1101.49785	0.66848	0.00073701	-0.63316	-0.00069806	0.035323	3.8944E-05	1102.5047695074124	46.829	0.25984	46.829	46.647	46.907	0					6	4	2	0	0	0	0.48186	1	17791	17791		47.749	15.443	1	13592000			4075	5159	2121	2146	4005	4005					-0.04883447898532722
ASETAGSGFLY	11	Unmodified	_ASETAGSGFLY_					0	0	0		ENST00000587651.1_1_17:58296950-58303472:-|nuORF;USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1102.505859375	1	1102.50513	1101.49785	1.0975	0.00121	-0.044596	-4.9168E-05	1.0529	0.0011608	1102.5046491912508	46.866	0.30796	46.755	46.574	46.882	-0.11121					12	5	3	0	0	0	0.17159	1	17846	17846		78.728	38.489	1	89627000			4076	5159	2121	2146	4006	4006					-0.04883447898532722
ASETAGSGFLY	11	Unmodified	_ASETAGSGFLY_					0	0	0		ENST00000587651.1_1_17:58296950-58303472:-|nuORF;USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	551.756103515625	2	551.756204	1101.49785	0.82275	0.00045396	-0.43572	-0.00024041	0.38703	0.00021355	551.7558675259972	46.866	0.25697	46.755	46.574	46.831	-0.11121					11	4	3	0	0	0	0.28919	1	17871	17871		65.235	20.828	1	32680000			4077	5159	2121	2146	4007	4007					-0.04883447898532722
ASETAGSGFLY	11	Unmodified	_ASETAGSGFLY_					0	0	0		ENST00000587651.1_1_17:58296950-58303472:-|nuORF;USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	551.756591796875	2	551.756204	1101.49785	0.41315	0.00022796	0.27526	0.00015188	0.68841	0.00037983	551.7562915492668	47.09	0.46863	46.776	46.542	47.01	-0.31405					19	8	3	0	0	0	0.14404	1	17661	17661		81.89	40.051	1	24894000			4078	5159	2121	2146	4008	4008					-0.04883447898532722
ASETAGSGFLY	11	Unmodified	_ASETAGSGFLY_					0	0	0		ENST00000587651.1_1_17:58296950-58303472:-|nuORF;USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1102.506103515625	1	1102.50513	1101.49785	0.38842	0.00042823	0.13101	0.00014444	0.51943	0.00057267	1102.505326569598	47.084	0.36468	46.77	46.594	46.959	-0.31405					14	6	3	0	0	0	0.06227	1	17668	17668		96.111	61.709	1	19396000			4079	5159	2121	2146	4009	4009					-0.04883447898532722
ASETAGSGFLY	11	Unmodified	_ASETAGSGFLY_					0	0	0		ENST00000587651.1_1_17:58296950-58303472:-|nuORF;USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	551.7570190429688	2	551.756204	1101.49785	0.66966	0.00036949	0.10659	5.8809E-05	0.77624	0.0004283	551.7562595491208	47.141	0.25698	46.77	46.641	46.898	-0.37038					8	4	2	0	0	0	0.17159	1	17435	17435		78.728	44.326	1	6768600			4080	5159	2121	2146	4010	4010					-0.04883447898532722
ASETAGSGFLY	11	Unmodified	_ASETAGSGFLY_					0	0	0		ENST00000587651.1_1_17:58296950-58303472:-|nuORF;USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1102.50537109375	1	1102.50513	1101.49785	0.69221	0.00076316	-0.029152	-3.214E-05	0.66306	0.00073102	1102.5050899215423	47.164	0.35474	46.794	46.589	46.944	-0.37038					12	6	3	0	0	0	0.38706	1	17437	17437		56.177	18.001	1	6137300			4081	5159	2121	2146	4011	4011					-0.04883447898532722
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	HCT116MG_D190212_S1	1	988.4618530273438	1	988.462204	987.454927	0.5271	0.00052101	0.15078	0.00014904	0.67787	0.00067005	988.4622543794661	49.157	0.41437	49.157	48.974	49.389	0					22	7	4	0	0	0	0.031005	1	18706	18706		85.357	45.399	1	745600000			4082	6490	2122	2147	4012	4012					-0.03930217956008164
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	HCT116MG_D190212_S2	2	988.4620361328125	1	988.462204	987.454927	0.71196	0.00070374	-0.16017	-0.00015832	0.55179	0.00054542	988.4618826850246	49.215	0.86306	49.061	48.884	49.747	-0.15405					43	16	4	0	0	0	0.031005	1	18819	18819		85.357	45.399	1	1591999999.9999998			4083	6490	2122	2147	4013	4013					-0.03930217956008164
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7350158691406	2	494.73474	987.454927	0.22208	0.00010987	0.35689	0.00017657	0.57897	0.00028644	494.73485649402124	49.206	0.60858	49.052	48.935	49.543	-0.15405					15	11	3	0	0	0	0.013464	1	18852	18852		104.8	56.453	1	83637000			4084	6490	2122	2147	4014	4014					-0.03930217956008164
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	HCT116MG_D190212_S3	3	988.4628295898438	1	988.462204	987.454927	0.60637	0.00059938	-0.043874	-4.3367E-05	0.5625	0.00055601	988.4620250918931	49.511	0.47038	49.195	48.975	49.445	-0.31596					23	8	4	0	0	0	0.023611	1	18617	18617		92.822	46.801	1	100880000			4085	6490	2122	2147	4015	4015					-0.03930217956008164
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MSMS	HCT116MG_D190212_S3	3	494.7348937988281	2	494.73474	987.454927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.537	1	49.221	48.721	49.721	-0.31596								0	0	0	0.060494	1	18656	18656		67.344	37.119	1				4086	6490	2122	2147	4016	4016					-0.03930217956008164
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MATCH	HCT116MG_D190212_S1	1		2	494.73474	987.454927	0.29417	0.00014553	0.31016	0.00015344	0.60432	0.00029898	494.7347737445879	49.209	0.26047	49.209	48.974	49.235	0	0.078545	-3.7723E-05	NaN	104.8	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20135000			4087	6490	2122	2147							-0.03930217956008164
ASETSGHQGY	10	Unmodified	_ASETSGHQGY_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20;TCF20|p.P1561Lfs*54|1|0.31|ENSG00000100207|chr22:42210624-42210624|G/-|frameshift_variant;TCF20|p.K1579Nfs*36|1|0.18|ENSG00000100207|chr22:42210569-42210569|T/-|frameshift_variant;TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant;TCF20|p.L1388Efs*6|1|0.17|ENSG00000100207|chr22:42211143-42211144|AA/-|frameshift_variant;TCF20|p.L1424Gfs*21|1|0.32|ENSG00000100207|chr22:42211037-42211038|-/TCCT|frameshift_variant;TCF20|p.R570Dfs*37|1|0.61|ENSG00000100207|chr22:42213599-42213599|G/-|frameshift_variant;TCF20|p.G1028Efs*6|1|0.09|ENSG00000100207|chr22:42212223-42212223|C/-|frameshift_variant	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-MSMS	HCT116MG_D190212_S1	1	519.2217407226562	2	518.720153	1035.42575	0.49896	0.00025882	-0.33396	-0.00017323	0.165	8.5588E-05	518.7199031693319	17.003	0.36508	17.003	16.785	17.15	0					11	6	3	0	0	0	0.013156	1	5762	5762		136.39	96.442	1	11093000			4088	1674	2123	2148	4017	4017					-0.09054362252277315
ASETSGHQGY	10	Unmodified	_ASETSGHQGY_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20;TCF20|p.P1561Lfs*54|1|0.31|ENSG00000100207|chr22:42210624-42210624|G/-|frameshift_variant;TCF20|p.K1579Nfs*36|1|0.18|ENSG00000100207|chr22:42210569-42210569|T/-|frameshift_variant;TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant;TCF20|p.L1388Efs*6|1|0.17|ENSG00000100207|chr22:42211143-42211144|AA/-|frameshift_variant;TCF20|p.L1424Gfs*21|1|0.32|ENSG00000100207|chr22:42211037-42211038|-/TCCT|frameshift_variant;TCF20|p.R570Dfs*37|1|0.61|ENSG00000100207|chr22:42213599-42213599|G/-|frameshift_variant;TCF20|p.G1028Efs*6|1|0.09|ENSG00000100207|chr22:42212223-42212223|C/-|frameshift_variant	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-MSMS	HCT116MG_D190212_S2	2	518.7201538085938	2	518.720153	1035.42575	0.2975	0.00015432	0.15268	7.9201E-05	0.45018	0.00023352	518.7201265950329	17.405	0.41803	17.056	16.873	17.291	-0.34933					17	7	4	0	0	0	0.00081686	1	5928	5928		179.17	137.33	1	50294000			4089	1674	2123	2148	4018	4018					-0.09054362252277315
ASEVGSPPSY	10	Unmodified	_ASEVGSPPSY_					0	0	0		nc|ENSG00000179241|Q86YD5-2|LDLRAD3;LDLRAD3|p.Y293Tfs*20|2|0.4|ENSG00000179241|chr11:36229230-36229230|C/-|frameshift_variant;ENSG00000179241|ENST00000315571|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	MULTI-MSMS	HCT116MG_D190212_S2	2	993.4534301757812	1	993.452367	992.445091	0.84308	0.00083756	-0.11064	-0.00010991	0.73244	0.00072765	993.4521784687905	29.752	0.51669	29.451	29.134	29.65	-0.30095					15	9	2	0	0	0	0.00064427	1	10909	10909		183.04	101.15	1	36598000			4090	5544	2124	2149	4019	4019					-0.05143405961382541
ASEVGSPPSY	10	Unmodified	_ASEVGSPPSY_					0	0	0		nc|ENSG00000179241|Q86YD5-2|LDLRAD3;LDLRAD3|p.Y293Tfs*20|2|0.4|ENSG00000179241|chr11:36229230-36229230|C/-|frameshift_variant;ENSG00000179241|ENST00000315571|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	MSMS	HCT116MG_D190212_S2	2	497.2299499511719	2	497.229822	992.445091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.86	1	29.559	29.059	30.059	-0.30095								0	0	0	0.7978	1	10955	10955		29.082	10.935	1				4091	5544	2124	2149	4020	4020					-0.05143405961382541
ASEVGSPPSY	10	Unmodified	_ASEVGSPPSY_					0	0	0		nc|ENSG00000179241|Q86YD5-2|LDLRAD3;LDLRAD3|p.Y293Tfs*20|2|0.4|ENSG00000179241|chr11:36229230-36229230|C/-|frameshift_variant;ENSG00000179241|ENST00000315571|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	MULTI-MSMS	HCT116MG_D190212_S3	3	993.4531860351562	1	993.452367	992.445091	0.76445	0.00075945	-0.10121	-0.00010055	0.66324	0.0006589	993.4519927592971	29.909	0.58236	29.672	29.292	29.874	-0.23655					14	10	2	0	0	0	0.02502	1	10881	10881		111.29	52.608	1	6066700			4092	5544	2124	2149	4021	4021					-0.05143405961382541
ASEVGSPPSY	10	Unmodified	_ASEVGSPPSY_					0	0	0		nc|ENSG00000179241|Q86YD5-2|LDLRAD3;LDLRAD3|p.Y293Tfs*20|2|0.4|ENSG00000179241|chr11:36229230-36229230|C/-|frameshift_variant;ENSG00000179241|ENST00000315571|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	nc|ENSG00000179241|Q86YD5-2|LDLRAD3	MULTI-MATCH	HCT116MG_D190212_S1	1		1	993.452367	992.445091	0.76851	0.00076348	0.029392	2.92E-05	0.79791	0.00079268	993.4523202521817	29.531	0.41667	29.531	29.269	29.685	0	-0.020586	0.00011232	NaN	183.04	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5786500			4093	5544	2124	2149							-0.05143405961382541
ASEYDQIRY	9	Unmodified	_ASEYDQIRY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	HCT116MG_D190212_S1	1	572.767333984375	2	572.767103	1143.51965	0.42351	0.00024257	0.19316	0.00011064	0.61667	0.00035321	572.7672760409394	34.644	0.20753	34.644	34.493	34.701	0					5	3	2	0	0	0	0.24534	1	12879	12879		36.506	8.8774	1	6432300			4094	4593	2125	2150	4022	4022					-0.046366431500018734
ASEYDQIRY	9	Unmodified	_ASEYDQIRY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	HCT116MG_D190212_S2	2	572.7673950195312	2	572.767103	1143.51965	0.58339	0.00033414	-0.30093	-0.00017236	0.28245	0.00016178	572.767007064461	34.671	0.36235	34.513	34.399	34.761	-0.15834					10	6	3	0	0	0	0.011082	1	12918	12918		110.67	49.073	1	34699000			4095	4593	2125	2150	4023	4023					-0.046366431500018734
ASEYDQIRY	9	Unmodified	_ASEYDQIRY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;HIPK1|p.N462*|1|0.27|ENSG00000163349|chr1:113955620-113955621|-/T|frameshift_variant;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-SECPEP	HCT116MG_D190212_S3	3	572.8142700195312	2	572.767103	1143.51965	0.39062	0.00022373	-0.10908	-6.2477E-05	0.28154	0.00016126	572.7671784570352	34.935	0.25993	34.638	34.492	34.752	-0.29707					7	4	2	0	0	0	0.22961	1	12892	12892		24.991	13.351	1	8626300			4096	4593	2125	2150	4024	4024					-0.046366431500018734
ASFDYIVREGK	11	Unmodified	_ASFDYIVREGK_					0	0	0		ENST00000476655.5_1_9:130884882-130886033:-|nuORF;ENST00000496594.5_1_9:130885151-130886781:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2	ENST00000476655.5_1_9:130884882-130886033:-|nuORF	ENST00000476655.5_1_9:130884882-130886033:-|nuORF	MSMS	HCT116MG_D190212_S3	3	428.89129638671875	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1671	1	7.181	6.681	7.681	0.013901								0	0	0	0.9613	1	2165	2165		0.40827	0.041592	1				4097	4015	2126	2151	4025	4025					0.020521672178801964
ASFQRLSDA	9	Unmodified	_ASFQRLSDA_					0	0	0		SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;SBF2|p.E1445Sfs*15|1|0.09|ENSG00000133812|chr11:9808111-9808111|T/-|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant	SBF2|p.Y797*|1|0.08|ENSG00000133812|chr11:9853685-9853686|AT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	994.4969482421875	1	994.495235	993.487959	0.9092	0.00090419	-0.13151	-0.00013078	0.77769	0.00077341	994.4950885447349	31.473	0.20684	31.225	31.095	31.302	-0.24883					6	3	2	0	0	0	0.090581	1	11619	11619		60.074	3.8969	1	26358000			4098	3251	2127	2152	4026	4026					-0.009045911132830042
ASFVVWYAP	9	Unmodified	_ASFVVWYAP_					0	0	0			REV__OPCML|p.I218Nfs*28|1|0.22|ENSG00000183715|chr11:132437233-132437234|-/T|frameshift_variant	REV__OPCML|p.I218Nfs*28|1|0.22|ENSG00000183715|chr11:132437233-132437234|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	520.2689819335938	2	520.26601	1038.51747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.095	1	32.81	32.31	33.31	-0.28511								0	0	0	0.76781	1	12147	12147		8.5933	0.68312	1		+		4099	13775	2128	2153	4027	4027					-0.0002502709717191465
ASGASSLSLP	10	Unmodified	_ASGASSLSLP_					0	0	0			REV__ENST00000475693.1_1_2:242607884-242611676:+|nuORF	REV__ENST00000475693.1_1_2:242607884-242611676:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	891.4422607421875	1	889.462538	888.455261	1.0149	0.00090269	0.35208	0.00031317	1.367	0.0012159	889.4625653009361	27.611	0.25904	27.269	27.139	27.398	-0.34201					9	4	3	0	0	0	0.40515	1	10005	10005		41.84	1.8823	1	30793000	+		4100	15907	2129	2154	4028	4028					0.00657201763874582
ASGIPAETHT	10	Unmodified	_ASGIPAETHT_					0	0	0			REV__ENST00000359957.7_2_11:66109655-66112595:-|nuORF	REV__ENST00000359957.7_2_11:66109655-66112595:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2433776855469	2	492.243264	982.471974	0.25564	0.00012584	0.33619	0.00016549	0.59183	0.00029132	492.2434067815124	19.231	0.46932	18.862	18.575	19.044	-0.3695					15	8	2	0	0	0	0.60826	1	6664	6664		27.629	2.6378	1	6002500	+		4101	15079	2130	2155	4029	4029					-0.019962973502060777
ASHSSTKELY	10	Unmodified	_ASHSSTKELY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S2	2	562.1497802734375	2	561.774928	1121.5353	0.3797	0.00021331	-0.3862	-0.00021696	-0.006498	-3.6504E-06	562.2759058575314	28.947	0.20524	28.631	28.504	28.709	-0.31613					5	3	2	0	0	0	0.75427	1	10602	10602		15.847	4.3525	1	10420000			4102	4258;9506	2131	2156	4030	4030					-0.020603566329327805
ASIEDKRDP	9	Unmodified	_ASIEDKRDP_					0	0	0			REV__nc|ENSG00000112706|Q17R60-2|IMPG1	REV__nc|ENSG00000112706|Q17R60-2|IMPG1	MSMS	HCT116MG_D190212_S4	4	515.761962890625	2	515.76182	1029.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.751	1	21.532	21.032	22.032	-0.21832								0	0	0	0.59795	1	7527	7527		24.021	8.1734	1		+		4103	11467	2132	2157	4031	4031					-0.00448625804438052
ASKRKKPHP	9	Unmodified	_ASKRKKPHP_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A;KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant;KIF26A|p.L1096Wfs*152|1|0.43|ENSG00000066735|chr14:104176064-104176064|G/-|frameshift_variant;KIF26A|p.G1145Afs*103|1|0.2|ENSG00000066735|chr14:104176218-104176218|G/-|frameshift_variant;KIF26A|p.R1269Gfs*7|1|0.38|ENSG00000066735|chr14:104176588-104176588|C/-|frameshift_variant	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MSMS	HCT116MG_D190212_S4	4	350.21728515625	3	350.217325	1047.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.921	1	39.542	39.042	40.042	-0.37936								0	0	0	0.76991	1	14632	14632		1.1933	0	1				4104	1176	2133	2158	4032	4032					0.1082366641956014
ASKRKKPHP	9	Unmodified	_ASKRKKPHP_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A;KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant;KIF26A|p.L1096Wfs*152|1|0.43|ENSG00000066735|chr14:104176064-104176064|G/-|frameshift_variant;KIF26A|p.G1145Afs*103|1|0.2|ENSG00000066735|chr14:104176218-104176218|G/-|frameshift_variant;KIF26A|p.R1269Gfs*7|1|0.38|ENSG00000066735|chr14:104176588-104176588|C/-|frameshift_variant	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MSMS	HCT116MG_D190212_S4	4	350.21697998046875	3	350.217325	1047.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.977	1	39.598	39.098	40.098	-0.37936								0	0	0	0.76991	1	14652	14652		1.1933	0	1				4105	1176	2133	2158	4033	4033					0.1082366641956014
ASKRKKPHP	9	Unmodified	_ASKRKKPHP_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A;KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant;KIF26A|p.L1096Wfs*152|1|0.43|ENSG00000066735|chr14:104176064-104176064|G/-|frameshift_variant;KIF26A|p.G1145Afs*103|1|0.2|ENSG00000066735|chr14:104176218-104176218|G/-|frameshift_variant;KIF26A|p.R1269Gfs*7|1|0.38|ENSG00000066735|chr14:104176588-104176588|C/-|frameshift_variant	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MSMS	HCT116MG_D190212_S4	4	350.217041015625	3	350.217325	1047.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.985	1	56.685	56.185	57.185	-0.3004								0	0	0	0.76991	1	21377	21377		1.1933	0.79263	1				4106	1176	2133	2158	4034	4034					0.1082366641956014
ASLGAFAG	8	Unmodified	_ASLGAFAG_					0	0	0		FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1	FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	693.3567504882812	1	693.356616	692.34934	1.0813	0.00074974	-0.14147	-9.8087E-05	0.93986	0.00065166	693.3563400758932	35.293	0.43779	34.993	34.698	35.136	-0.29922					18	9	3	0	0	0	0.5791	1	12979	12979		34.187	1.7337	1	25834000			4107	2360	2134	2159	4035	4035					-0.009140892909499598
ASLGAFAG	8	Unmodified	_ASLGAFAG_					0	0	0		FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1	FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	693.3568725585938	1	693.356616	692.34934	0.81993	0.0005685	0.19885	0.00013787	1.0188	0.00070638	693.3565842364676	35.317	0.43535	34.931	34.646	35.081	-0.38606					19	11	3	0	0	0	0.5791	1	12892	12892		34.187	7.8461	1	26954000			4108	2360	2134	2159	4036	4036					-0.009140892909499598
ASLGEGEW	8	Unmodified	_ASLGEGEW_					0	0	0			REV__ENSG00000178015|ENST00000380007|GPR150	REV__ENSG00000178015|ENST00000380007|GPR150	MULTI-MSMS	HCT116MG_D190212_S4	4	848.3795166015625	1	848.378474	847.371197	0.73636	0.00062471	1.7957	0.0015234	2.532	0.0021481	848.3786014477789	27.516	0.41053	27.194	26.94	27.351	-0.32157					12	7	2	0	0	0	0.53394	1	9859	9859		38.151	3.9638	1	2106700	+		4109	13589	2135	2160	4037	4037					-0.05859329333043206
ASLGNLFA	8	Unmodified	_ASLGNLFA_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	HCT116MG_D190212_S2	2	792.42529296875	1	792.42503	791.417754	0.89385	0.00070831	0.12016	9.5214E-05	1.014	0.00080352	792.4249250086514	54.927	0.30667	54.739	54.611	54.918	-0.18797					12	5	3	0	0	0	0.12693	1	21161	21161		88.904	3.5469	1	277570000			4110	6107	2136	2161	4038	4038					0.013701552888960578
ASLLNFRNLP	10	Unmodified	_ASLLNFRNLP_					0	0	0		PSG5|p.W28R|1|0.16|ENSG00000204941|chr19:43185130-43185130|A/G|missense_variant	PSG5|p.W28R|1|0.16|ENSG00000204941|chr19:43185130-43185130|A/G|missense_variant	PSG5|p.W28R|1|0.16|ENSG00000204941|chr19:43185130-43185130|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	382.2203063964844	3	382.220624	1143.64004	0.21739	8.3092E-05	-0.1938	-7.4076E-05	0.023589	9.0161E-06	382.22049795841644	24.636	0.41467	24.367	24.082	24.497	-0.26881					13	7	2	0	0	0	0.76492	1	8642	8642		14.957	0.73899	1	9369300			4111	9786	2137	2162	4039	4039					0.07396809634292367
ASLMHSFIL	9	Unmodified	_ASLMHSFIL_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.77337646484375	2	509.773145	1017.53174	0.42657	0.00021745	0.054993	2.8034E-05	0.48156	0.00024549	509.7730364011449	56.106	0.15343	55.924	55.796	55.949	-0.18261					6	2	3	0	0	0	0.023611	1	21649	21649		92.822	41.967	1	53166000			4112	2922	2138	2163	4040	4040					0.02367302059508347
ASLPASTTILP	11	Unmodified	_ASLPASTTILP_					0	0	0		ENST00000014914.5_1_12:13065548-13065635:+|nuORF	ENST00000014914.5_1_12:13065548-13065635:+|nuORF	ENST00000014914.5_1_12:13065548-13065635:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	535.8087768554688	2	535.808239	1069.60193	0.49663	0.0002661	0.019683	1.0546E-05	0.51631	0.00027664	536.3097480351856	42.213	0.52036	41.909	41.572	42.092	-0.30352					17	9	2	0	0	0	0.55933	1	15714	15714		39.95	5.548	1	4331400			4113	6710	2139	2164	4041	4041					0.06990878928968414
ASLPVPALAP	10	Unmodified	_ASLPVPALAP_					0	0	0		ENST00000585421.5_1_17:76851400-76851721:-|nuORF	ENST00000585421.5_1_17:76851400-76851721:-|nuORF	ENST00000585421.5_1_17:76851400-76851721:-|nuORF	MSMS	HCT116MG_D190212_S4	4	468.2816162109375	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.838	1	33.454	32.954	33.954	-0.38426								0	0	0	0.82636	1	12332	12332		25.399	5.9603	1				4114	8987	2140	2165	4042	4042					0.07887545936944207
ASLSVGLA	8	Unmodified	_ASLSVGLA_					0	0	0			REV__ENST00000330560.7_2_8:25316850-25317784:+|nuORF	REV__ENST00000330560.7_2_8:25316850-25317784:+|nuORF	MSMS	HCT116MG_D190212_S3	3	359.2537841796875	2	359.210704	716.406855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.517	1	58.247	57.747	58.747	-0.26932								0	0	0	0.8837	1	22262	22262		2.8892	0	1		+		4115	14926	2141	2166	4043	4043					0.037307529146346496
ASLTELIHDID	11	Unmodified	_ASLTELIHDID_					0	0	0			REV__nc|ENSG00000159921|Q9Y223-5|GNE	REV__nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MSMS	HCT116MG_D190212_S1	1	614.3189086914062	2	613.816793	1225.61903	0.5545	0.00034036	-0.22707	-0.00013938	0.32743	0.00020098	613.8166412929212	33.545	0.31099	33.545	33.4	33.711	0					12	5	3	0	0	0	0.48186	1	12420	12420		47.749	11.242	1	32923000	+		4116	12815	2142	2167	4044	4044					0.015247547441049392
ASLTELIHDID	11	Unmodified	_ASLTELIHDID_					0	0	0			REV__nc|ENSG00000159921|Q9Y223-5|GNE	REV__nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MSMS	HCT116MG_D190212_S2	2	613.8167724609375	2	613.816793	1225.61903	0.57984	0.00035591	0.049622	3.0459E-05	0.62946	0.00038637	613.8167639544753	33.753	0.36405	33.56	33.327	33.691	-0.19297					17	6	4	0	0	0	0.48186	1	12525	12525		47.749	7.5095	1	210600000	+		4117	12815	2142	2167	4045	4045					0.015247547441049392
ASLTELIHDID	11	Unmodified	_ASLTELIHDID_					0	0	0			REV__nc|ENSG00000159921|Q9Y223-5|GNE	REV__nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MSMS	HCT116MG_D190212_S3	3	613.8173828125	2	613.816793	1225.61903	0.42818	0.00026282	0.089041	5.4655E-05	0.51722	0.00031748	613.8168329603772	33.931	0.41624	33.637	33.455	33.871	-0.29419					24	7	5	0	0	0	0.38706	1	12462	12462		56.177	18.001	1	60992000	+		4118	12815	2142	2167	4046	4046					0.015247547441049392
ASLTELIHDID	11	Unmodified	_ASLTELIHDID_					0	0	0			REV__nc|ENSG00000159921|Q9Y223-5|GNE	REV__nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	613.816793	1225.61903	0.5545	0.00034036	-0.22707	-0.00013938	0.32743	0.00020098	613.8166412929212	33.545	0.31099	33.545	33.4	33.711	0	-0.05149	-0.00026845	NaN	56.177	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32923000	+		4119	12815	2142	2167							0.015247547441049392
ASLTELIHDID	11	Unmodified	_ASLTELIHDID_					0	0	0			REV__nc|ENSG00000159921|Q9Y223-5|GNE	REV__nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	613.816793	1225.61903	0.8227	0.00050499	-0.42959	-0.00026369	0.39311	0.0002413	613.8165008064917	34.027	0.31163	33.643	33.466	33.777	-0.38426	0.046823	-0.00051707	NaN	56.177	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17720000	+		4120	12815	2142	2167							0.015247547441049392
ASNLQLKKAET	11	Unmodified	_ASNLQLKKAET_					0	0	0			REV__VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant	REV__VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	601.840576171875	2	601.840602	1201.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.118	1	32.118	31.618	32.618	0								0	0	0	0.85321	1	11841	11841		26.021	0.023308	1		+		4121	12273	2143	2168	4047	4047					0.07388453734938594
ASNTPGAPETH	11	Unmodified	_ASNTPGAPETH_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	HCT116MG_D190212_S4	4	1081.4913330078125	1	1081.49088	1080.4836	0.052842	5.7148E-05	0.37881	0.00040968	0.43166	0.00046683	1081.4910645337566	16.87	0.46389	16.704	16.351	16.815	-0.16664					12	8	2	0	0	0	0.41825	1	5556	5556		53.404	1.9888	1	784790			4122	3147	2144	2169	4048	4048					-0.0534210032685678
ASPPEFCVL	9	Unmodified	_ASPPEFCVL_					0	0	0		ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	MSMS	HCT116MG_D190212_S4	4	481.7379150390625	2	481.736228	961.457904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.653	1	20.452	19.952	20.952	-0.20133								0	0	0	0.74436	1	7083	7083		16.942	2.104	1				4123	5545	2145	2170	4049	4049					-0.02436666102835261
ASPSAVPNGPQ	11	Unmodified	_ASPSAVPNGPQ_					0	0	0		nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-5|FNBP1	nc|ENSG00000187239|Q96RU3-5|FNBP1	MULTI-MSMS	HCT116MG_D190212_S4	4	512.7568359375	2	512.756538	1023.49852	0.33027	0.00016935	-0.73669	-0.00037774	-0.40642	-0.00020839	512.7564071677219	24.066	0.25983	23.808	23.677	23.937	-0.25816					10	4	3	0	0	0	0.68491	1	8469	8469		26.021	2.2309	1	2579400			4124	5931	2146	2171	4050	4050					-0.012286084588595259
ASQDCCCCCYS	11	Unmodified	_ASQDCCCCCYS_					0	0	0		ENST00000373053.7_2_10:74647032-74647206:+|nuORF	ENST00000373053.7_2_10:74647032-74647206:+|nuORF	ENST00000373053.7_2_10:74647032-74647206:+|nuORF	MSMS	HCT116MG_D190212_S1	1	593.1583862304688	2	593.16053	1184.30651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.515	1	39.515	39.015	40.015	0								0	0	0	0.96157	1	14826	14826		0.26902	0.26902	1				4125	7470	2147	2172	4051	4051					-0.2782742285119184
ASQEHGLKY	9	Unmodified	_ASQEHGLKY_					0	0	0		nc|ENSG00000242485|Q9BYC9-2|MRPL20;ENSG00000242485|ENST00000344843|MRPL20	nc|ENSG00000242485|Q9BYC9-2|MRPL20	nc|ENSG00000242485|Q9BYC9-2|MRPL20	MSMS	HCT116MG_D190212_S1	1	516.7591552734375	2	516.759081	1031.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.422	1	22.422	21.922	22.922	0								0	0	0	0.04525	1	7937	7937		71.708	29.868	1				4126	6552	2148	2173	4052	4052					-0.010883045962373217
ASQEHGLKY	9	Unmodified	_ASQEHGLKY_					0	0	0		nc|ENSG00000242485|Q9BYC9-2|MRPL20;ENSG00000242485|ENST00000344843|MRPL20	nc|ENSG00000242485|Q9BYC9-2|MRPL20	nc|ENSG00000242485|Q9BYC9-2|MRPL20	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7594604492188	2	516.759081	1031.50361	0.19414	0.00010032	0.8058	0.0004164	0.99993	0.00051673	516.7594160564348	23.033	0.26015	22.648	22.466	22.726	-0.3852					10	4	3	0	0	0	0.13424	1	8216	8216		51.415	27.395	1	12163000			4127	6552	2148	2173	4053	4053					-0.010883045962373217
ASQFVINRIP	10	Unmodified	_ASQFVINRIP_					0	0	0			REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	MULTI-MSMS	HCT116MG_D190212_S1	1	382.2206115722656	3	382.220624	1143.64004	-0.034443	-1.3165E-05	-0.18771	-7.1747E-05	-0.22215	-8.4912E-05	382.22053175340056	24.261	0.57529	24.261	23.941	24.516	0					19	10	3	0	0	0	0.67142	1	8640	8640		22.775	3.149	1	13264000	+		4128	11066	2149	2174	4054	4054					0.07396809634292367
ASQFVINRIP	10	Unmodified	_ASQFVINRIP_					0	0	0			REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	382.220624	1143.64004	-0.077172	-2.9497E-05	0.13721	5.2443E-05	0.060035	2.2947E-05	382.2205987574228	24.829	0.57235	24.453	24.087	24.66	-0.37521	0.13157	0.00013641	NaN	22.775	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137810000	+		4129	11066	2149	2174							0.07396809634292367
ASQFVINRIP	10	Unmodified	_ASQFVINRIP_					0	0	0			REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	382.220624	1143.64004	-0.19169	-7.3268E-05	0.2612	9.9837E-05	0.069513	2.6569E-05	382.22058233763414	24.267	0.62467	24.206	23.739	24.363	-0.061449	-0.11593	0.00027859	NaN	22.775	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22465000	+		4130	11066	2149	2174							0.07396809634292367
ASQFVINRIP	10	Unmodified	_ASQFVINRIP_					0	0	0			REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	382.220624	1143.64004	0.21739	8.3092E-05	-0.1938	-7.4076E-05	0.023589	9.0161E-06	382.22049795841644	24.636	0.41467	24.367	24.082	24.497	-0.26881	0.04553	-0.00024315	NaN	22.775	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9369300	+		4131	11066	2149	2174							0.07396809634292367
ASRGHYRHY	9	Unmodified	_ASRGHYRHY_					0	0	0			REV__PIM1|p.R214C|1|0.34|ENSG00000137193|chr6:37173028-37173028|C/T|missense_variant	REV__PIM1|p.R214C|1|0.34|ENSG00000137193|chr6:37173028-37173028|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	382.9017639160156	3	382.856568	1145.54787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.511	1	10.511	10.011	11.011	0								0	0	0	0.76948	1	3231	3231		2.7352	0	1		+		4132	12165	2150	2175	4055	4055					-0.01907855659374036
ASRGVEGV	8	Unmodified	_ASRGVEGV_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-MSMS	HCT116MG_D190212_S2	2	387.7088928222656	2	387.70886	773.403166	0.054306	2.1055E-05	0.00073523	2.8505E-07	0.055042	2.134E-05	387.7088428616888	24.854	0.25926	24.478	24.296	24.556	-0.37521					6	4	2	0	0	0	0.34844	1	8928	8928		54.774	8.7526	1	15925000	+		4133	12131	2151	2176	4056	4056					0.007400831407608166
ASRRRNDYLIW	11	Unmodified	_ASRRRNDYLIW_					0	0	0			REV__nc|ENSG00000170364|Q53H47-3|SETMAR	REV__nc|ENSG00000170364|Q53H47-3|SETMAR	MULTI-MSMS	HCT116MG_D190212_S1	1	483.92974853515625	3	483.928503	1448.76368	0.43705	0.0002115	1.6791	0.00081255	2.1161	0.001024	483.92959580719304	29.034	0.20885	29.034	28.903	29.112	0					8	3	3	0	0	0	0.73111	1	10621	10621		10.315	6.4693	1	9516200	+		4134	13294	2152	2177	4057	4057					0.05724860734608228
ASSPGPEDIGP	11	Unmodified	_ASSPGPEDIGP_					0	0	0		ENST00000600466.1_1_19:50306188-50306263:+|nuORF	ENST00000600466.1_1_19:50306188-50306263:+|nuORF	ENST00000600466.1_1_19:50306188-50306263:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	513.7691650390625	2	513.740554	1025.46655	0.38623	0.00019842	-0.56229	-0.00028887	-0.17606	-9.045E-05	513.7405051621096	22.559	0.26091	22.559	22.324	22.585	0					5	4	2	0	0	0	0.3312	1	7996	7996		20.415	0	1	2995300			4135	9085	2153	2178	4058	4058					-0.045160209326922995
ASSQDALMY	9	Unmodified	_ASSQDALMY_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2;ADNP2|p.P500Qfs*7|1|0.18|ENSG00000101544|chr18:80136908-80136908|C/-|frameshift_variant;ADNP2|p.P628Lfs*39|1|0.11|ENSG00000101544|chr18:80137292-80137292|C/-|frameshift_variant;ADNP2|p.P324Lfs*8|2|0.52|ENSG00000101544|chr18:80136378-80136378|C/-|frameshift_variant;ADNP2|p.A325Cfs*59|1|0.31|ENSG00000101544|chr18:80136377-80136378|-/C|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	985.4300537109375	1	985.429523	984.422247	0.33659	0.00033169	-0.139	-0.00013697	0.1976	0.00019472	985.4297509253412	39.891	0.25989	39.891	39.761	40.021	0					7	4	2	0	0	0	0.049545	1	15002	15002		74.929	26.583	1	10598000			4136	65	2154	2179	4059	4059					-0.07058748350505084
ASSQDALMY	9	Unmodified	_ASSQDALMY_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2;ADNP2|p.P500Qfs*7|1|0.18|ENSG00000101544|chr18:80136908-80136908|C/-|frameshift_variant;ADNP2|p.P628Lfs*39|1|0.11|ENSG00000101544|chr18:80137292-80137292|C/-|frameshift_variant;ADNP2|p.P324Lfs*8|2|0.52|ENSG00000101544|chr18:80136378-80136378|C/-|frameshift_variant;ADNP2|p.A325Cfs*59|1|0.31|ENSG00000101544|chr18:80136377-80136378|-/C|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	985.4298706054688	1	985.429523	984.422247	0.65088	0.0006414	-0.335	-0.00033012	0.31588	0.00031128	985.4296166383241	39.96	0.4143	39.887	39.687	40.102	-0.072838					14	7	3	0	0	0	0.027442	1	15052	15052		88.954	31.483	1	47406000			4137	65	2154	2179	4060	4060					-0.07058748350505084
ASSQDALMY	9	Unmodified	_ASSQDALMY_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2;ADNP2|p.P500Qfs*7|1|0.18|ENSG00000101544|chr18:80136908-80136908|C/-|frameshift_variant;ADNP2|p.P628Lfs*39|1|0.11|ENSG00000101544|chr18:80137292-80137292|C/-|frameshift_variant;ADNP2|p.P324Lfs*8|2|0.52|ENSG00000101544|chr18:80136378-80136378|C/-|frameshift_variant;ADNP2|p.A325Cfs*59|1|0.31|ENSG00000101544|chr18:80136377-80136378|-/C|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	985.4296875	1	985.429523	984.422247	0.65747	0.00064789	-0.22586	-0.00022257	0.43161	0.00042532	985.429195303807	40.213	0.31237	39.911	39.747	40.06	-0.30137					10	5	3	0	0	0	0.027442	1	14931	14931		88.954	40.608	1	8638700			4138	65	2154	2179	4061	4061					-0.07058748350505084
ASSSPCPRC	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASSSPCPRC_					1	0	0			REV__ENST00000581546.1_1_17:45917528-45917771:-|nuORF	REV__ENST00000581546.1_1_17:45917528-45917771:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	475.1970520019531	2	475.196945	948.379336	0.30855	0.00014662	0.045649	2.1692E-05	0.35419	0.00016831	475.19696159420374	26.601	0.36422	26.452	26.307	26.671	-0.14924					11	6	2	0	0	0	0.057285	1	9554	9554		71.134	13.662	1	5863500	+		4139	16615	2155	2180	4062	4062					-0.09691841679580193
ASSWLQDEHPQ	11	Unmodified	_ASSWLQDEHPQ_					0	0	0		ENST00000489171.5_1_10:45488916-45489087:+|nuORF	ENST00000489171.5_1_10:45488916-45489087:+|nuORF	ENST00000489171.5_1_10:45488916-45489087:+|nuORF	MSMS	HCT116MG_D190212_S4	4	649.2946166992188	2	649.294016	1296.57348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.96	1	25.67	25.17	26.17	-0.29022								0	0	0	0.9465	1	9225	9225		8.1555	0.54658	1				4140	8323	2156	2181	4063	4063					-0.06294470718285083
ASSWPRAPPP	10	Unmodified	_ASSWPRAPPP_					0	0	0			REV__FBRS|p.P241Lfs*63|1|0.16|ENSG00000156860|chr16:30668891-30668891|C/-|frameshift_variant	REV__FBRS|p.P241Lfs*63|1|0.16|ENSG00000156860|chr16:30668891-30668891|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	533.2794189453125	2	533.277441	1064.54033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.387	1	29.387	28.887	29.887	0								0	0	0	0.92272	1	10739	10739		10.824	0	1		+		4141	12732	2157	2182	4064	4064					0.01063992020317528
ASTPTGEW	8	Unmodified	_ASTPTGEW_					0	0	0			REV__ENST00000586922.2_1_18:32864420-32870144:-|nuORF	REV__ENST00000586922.2_1_18:32864420-32870144:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	848.427001953125	1	848.378474	847.371197	0.68073	0.00057752	-0.067495	-5.7261E-05	0.61324	0.00052026	848.3783255345087	27.953	0.41556	27.632	27.398	27.814	-0.32157					10	7	2	0	0	0	0.28869	1	10102	10102		18.135	1.1927	1	2988500	+		4142	16661	2158	2183	4065	4065					-0.05859329333043206
ASTPTGEW	8	Unmodified	_ASTPTGEW_					0	0	0			REV__ENST00000586922.2_1_18:32864420-32870144:-|nuORF	REV__ENST00000586922.2_1_18:32864420-32870144:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	848.378474	847.371197	0.77737	0.0006595	0.011068	9.3897E-06	0.78843	0.00066889	848.3783628177786	27.92	0.36374	27.732	27.465	27.829	-0.18847	0.050041	2.55E-05	NaN	18.135	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3235500	+		4143	16661	2158	2183							-0.05859329333043206
ASVAIPALTT	10	Unmodified	_ASVAIPALTT_					0	0	0			REV__LTBP3|p.L294Sfs*94|1|0.48|ENSG00000168056|chr11:65553515-65553515|G/-|frameshift_variant	REV__LTBP3|p.L294Sfs*94|1|0.48|ENSG00000168056|chr11:65553515-65553515|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.275390625	2	472.276575	942.538597	-0.068278	-3.2246E-05	-2.1112	-0.00099707	-2.1795	-0.0010293	472.2755870124943	49.978	0.20495	49.814	49.686	49.891	-0.16369					5	3	2	0	0	0	0.58749	1	19169	19169		29.082	3.6823	1	20808000	+		4144	16992	2159	2184	4066	4066					0.06502938211690434
ASVIQFSG	8	Unmodified	_ASVIQFSG_					0	0	0			REV__ZNF354A|p.T185Nfs*6|1|0.36|ENSG00000169131|chr5:178713324-178713325|-/T|frameshift_variant	REV__ZNF354A|p.T185Nfs*6|1|0.36|ENSG00000169131|chr5:178713324-178713325|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	808.4199829101562	1	808.419945	807.412668	0.82328	0.00066555	-0.059711	-4.8271E-05	0.76357	0.00061728	808.4197190475079	23.085	0.26018	22.7	22.57	22.83	-0.3852					7	4	2	0	0	0	0.19608	1	8218	8218		74.423	10.86	1	18296000	+		4145	13225	2160	2185	4067	4067					0.0012585142628722679
ASVLGLQKNNK	11	Unmodified	_ASVLGLQKNNK_					0	0	0		nc|ENSG00000163755|Q969F9-2|HPS3;ENSG00000163755|ENST00000296051|HPS3	nc|ENSG00000163755|Q969F9-2|HPS3	nc|ENSG00000163755|Q969F9-2|HPS3	MSMS	HCT116MG_D190212_S2	2	586.3428955078125	2	586.343312	1170.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.872	1	47.739	47.239	48.239	-0.13281								0	0	0	0.49807	1	18272	18272		47.594	5.7548	1				4146	4628	2161	2186	4068	4068					0.09356177317408765
ATAAAEFQ	8	Unmodified	_ATAAAEFQ_					0	0	0		ENSG00000116819|ENST00000373235|TFAP2E	ENSG00000116819|ENST00000373235|TFAP2E	ENSG00000116819|ENST00000373235|TFAP2E	MULTI-MSMS	HCT116MG_D190212_S3	3	808.3840942382812	1	808.383559	807.376283	0.93261	0.00075391	-0.052105	-4.2121E-05	0.88051	0.00071179	808.3833510690789	34.087	0.46854	33.793	33.611	34.079	-0.29419					18	8	3	0	0	0	0.17804	1	12515	12515		77.984	3.5616	1	33691000			4147	2542	2162	2187	4069	4069					-0.0351102547043638
ATAAAEFQ	8	Unmodified	_ATAAAEFQ_					0	0	0		ENSG00000116819|ENST00000373235|TFAP2E	ENSG00000116819|ENST00000373235|TFAP2E	ENSG00000116819|ENST00000373235|TFAP2E	MULTI-MSMS	HCT116MG_D190212_S4	4	808.3840942382812	1	808.383559	807.376283	0.95506	0.00077206	-0.033728	-2.7266E-05	0.92133	0.00074479	808.383435087353	34.15	0.41542	33.764	33.568	33.984	-0.38558					11	7	2	0	0	0	0.12463	1	12457	12457		89.427	4.0701	1	8310200			4148	2542	2162	2187	4070	4070					-0.0351102547043638
ATAAAGHGSPP	11	Unmodified	_ATAAAGHGSPP_					0	0	0		ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000113319|ENST00000265080|RASGRF2	MULTI-MSMS	HCT116MG_D190212_S2	2	469.2225341796875	2	468.730323	935.446094	0.16574	7.7687E-05	-0.14477	-6.7857E-05	0.020971	9.8299E-06	468.7301933575991	16.526	0.93918	16.184	15.421	16.36	-0.34183					27	17	2	0	0	0	0.70073	1	5413	5413		21.537	0.66577	1	4652500			4149	2381	2163	2188	4071	4071					-0.02421146801816576
ATAAALVLLP	10	Unmodified	_ATAAALVLLP_					0	0	0		ENST00000472270.1_1_X:70752999-70756209:+|nuORF;ENST00000488174.5_1_X:70752999-70764494:+|nuORF	ENST00000472270.1_1_X:70752999-70756209:+|nuORF	ENST00000472270.1_1_X:70752999-70756209:+|nuORF	MSMS	HCT116MG_D190212_S4	4	470.2956848144531	2	470.29731	938.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.887	1	30.523	30.023	31.023	-0.36416								0	0	0	0.90023	1	11187	11187		15.847	1.0089	1				4150	8173	2164	2189	4072	4072					0.10832118971029558
ATAAAPTPK	9	Unmodified	_ATAAAPTPK_					0	0	0		POU6F1|p.Q244Rfs*3|1|0.4|ENSG00000184271|chr12:51190423-51190423|G/-|frameshift_variant;ENSG00000184271|ENST00000333640|POU6F1	POU6F1|p.Q244Rfs*3|1|0.4|ENSG00000184271|chr12:51190423-51190423|G/-|frameshift_variant	POU6F1|p.Q244Rfs*3|1|0.4|ENSG00000184271|chr12:51190423-51190423|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	414.23443603515625	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.791	1	21.572	21.072	22.072	-0.21832								0	0	0	0.64498	1	7543	7543		21.747	1.293	1				4151	5763	2165	2190	4073	4073					0.03469826834646028
ATAAARLV	8	Unmodified	_ATAAARLV_					0	0	0			REV__ENST00000312637.4_1_5:99871039-99871213:+|nuORF	REV__ENST00000312637.4_1_5:99871039-99871213:+|nuORF	MSMS	HCT116MG_D190212_S1	1	386.7373046875	2	386.73742	771.460287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.346	1	14.346	13.846	14.846	0								0	0	0	0.8837	1	4688	4688		12.532	0	1		+		4152	14844	2166	2191	4074	4074					0.06541550417125563
ATAAATDPPPP	11	Unmodified	_ATAAATDPPPP_					0	0	0		ENST00000309534.10_1_3:88107291-88108197:-|nuORF	ENST00000309534.10_1_3:88107291-88108197:-|nuORF	ENST00000309534.10_1_3:88107291-88108197:-|nuORF	MSMS	HCT116MG_D190212_S3	3	504.74151611328125	2	504.753464	1007.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.945	1	21.945	21.445	22.445	0.00074577								0	0	0	0.93552	1	7673	7673		13.906	0.86358	1				4153	7041	2167	2192	4075	4075					-0.011071266903854848
ATAAELALGVR	11	Unmodified	_ATAAELALGVR_					0	0	0			REV__CELSR1|p.G614Afs*54|3|0.27|ENSG00000075275|chr22:46535330-46535330|C/-|frameshift_variant	REV__CELSR1|p.G614Afs*54|3|0.27|ENSG00000075275|chr22:46535330-46535330|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	535.84912109375	2	536.31148	1070.60841	0.54001	0.00028961	-0.33159	-0.00017783	0.20842	0.00011178	536.3109957197294	41.913	0.46756	41.844	41.601	42.068	-0.068199					14	7	3	0	0	0	0.70332	1	15794	15794		20.581	3.1383	1	33309000	+		4154	10146	2168	2193	4076	4076					0.07592816880310238
ATAAEPPLG	9	Unmodified	_ATAAEPPLG_					0	0	0			REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF	REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	413.7191467285156	2	413.718893	825.423233	0.067666	2.7994E-05	-0.25334	-0.00010481	-0.18568	-7.6818E-05	413.71882753821	31.524	0.26	31.153	30.971	31.231	-0.37026					7	4	2	0	0	0	0.17018	1	11430	11430		44.407	2.3125	1	5063700	+		4155	14678	2169	2194	4077	4077					0.0035383408071538724
ATAAETGAHGG	11	Unmodified	_ATAAETGAHGG_					0	0	0			REV__nc|ENSG00000135297|Q9Y2Z2-3|MTO1	REV__nc|ENSG00000135297|Q9Y2Z2-3|MTO1	MULTI-MSMS	HCT116MG_D190212_S3	3	471.7172546386719	2	471.717413	941.420273	0.099199	4.6794E-05	0.19755	9.3187E-05	0.29675	0.00013998	471.7175198799827	16.594	0.6241	16.679	16.289	16.913	0.085424					19	11	2	0	0	0	0.62391	1	5447	5447		32.786	3.7041	1	4617100	+		4156	12082	2170	2195	4078	4078					-0.05278041044095971
ATAAFQNLIA	10	Unmodified	_ATAAFQNLIA_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MSMS	HCT116MG_D190212_S3	3	510.27984619140625	2	510.279649	1018.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.091	1	41.788	41.288	42.288	-0.30257								0	0	0	0.76907	1	15669	15669		32.786	2.1491	1		+		4157	10915	2171	2196	4079	4079					0.03621456443227089
ATAAFQNLIA	10	Unmodified	_ATAAFQNLIA_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MSMS	HCT116MG_D190212_S4	4	510.27996826171875	2	510.279649	1018.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.158	1	41.783	41.283	42.283	-0.37565								0	0	0	0.75654	1	15484	15484		34.402	3.7652	1		+		4158	10915	2171	2196	4080	4080					0.03621456443227089
ATAAGEHDSIQ	11	Unmodified	_ATAAGEHDSIQ_					0	0	0			REV__ENSG00000186393|ENST00000335552|KRT26	REV__ENSG00000186393|ENST00000335552|KRT26	MULTI-MSMS	HCT116MG_D190212_S4	4	550.2554321289062	2	550.25436	1098.49417	0.58354	0.00032109	0.89331	0.00049155	1.4769	0.00081264	550.254864701294	20.39	0.20807	20.188	20.092	20.3	-0.20133					5	3	2	0	0	0	0.7093	1	7002	7002		18.373	2.224	1	1543700	+	+	4159	10275	2172	2197	4081	4081					-0.0511411767242862
ATAAPGSGSAP	11	Unmodified	_ATAAPGSGSAP_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MULTI-MSMS	HCT116MG_D190212_S2	2	443.7170715332031	2	443.716882	885.41921	0.16783	7.447E-05	-0.089974	-3.9923E-05	0.07786	3.4548E-05	443.716725217564	19.388	0.31269	19.018	18.836	19.148	-0.3695					9	5	2	0	0	0	0.69401	1	6739	6739		24.021	5.8742	1	6562700			4160	6390	2173	2198	4082	4082					-0.02808255413003735
ATACADVEER	10	Unmodified	_ATACADVEER_					0	0	0			REV__ENST00000475972.1_1_3:136705553-136729062:+|nuORF	REV__ENST00000475972.1_1_3:136705553-136729062:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	533.251953125	2	532.737488	1063.46042	0.35047	0.00018671	-0.47315	-0.00025206	-0.12267	-6.5352E-05	532.737159733404	18.542	0.26002	18.361	18.199	18.459	-0.18052					6	4	2	0	0	0	0.30526	1	6256	6256		6.2058	1.8765	1	1008600	+		4161	13488	2174	2199	4083	4083					-0.06876862435842668
ATADDLIDVV	10	Unmodified	_ATADDLIDVV_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000438989.1_1_2:20440064-20440208:-|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-SECPEP	HCT116MG_D190212_S3	3	515.762939453125	2	516.266404	1030.51826	0.34685	0.00017906	0.63529	0.00032798	0.98214	0.00050704	516.2665618634758	26.496	2.0834	26.347	25.421	27.504	-0.14924					58	39	3	0	0	0	0.29734	1	9362	9362		13.906	7.7003	1	16467000			4162	5841	2175	2200	4084	4084					0.004217227612343777
ATADMTGPQS	10	Unmodified	_ATADMTGPQS_					0	0	0			REV__ZNF653|p.S376G|1|0.16|ENSG00000161914|chr19:11487337-11487337|T/C|missense_variant	REV__ZNF653|p.S376G|1|0.16|ENSG00000161914|chr19:11487337-11487337|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	489.7135925292969	2	489.713482	977.41241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.444	1	17.095	16.595	17.595	-0.34933								0	0	0	0.91279	1	5937	5937		13.042	2.9685	1		+		4163	18085	2176	2201	4085	4085					-0.0771993635586341
ATADYICKV	9	Unmodified	_ATADYICKV_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	HCT116MG_D190212_S2	2	492.24725341796875	2	492.24696	982.479368	0.22891	0.00011268	-0.17654	-8.69E-05	0.052373	2.578E-05	492.24692882472215	38.492	0.26569	38.408	38.278	38.544	-0.084618					6	4	2	0	0	0	0.1935	1	14497	14497		41.956	9.6501	1	10026000			4164	3145	2177	2202	4086	4086					-0.012572810741403373
ATAEDLPLPP	10	Unmodified	_ATAEDLPLPP_					0	0	0		ENSG00000168334|ENST00000340369|XIRP1;XIRP1|p.F441Lfs*39|1|0.24|ENSG00000168334|chr3:39188123-39188123|A/-|frameshift_variant;nc|ENSG00000168334|Q702N8-2|XIRP1;XIRP1|p.W1135Gfs*2|1|0.26|ENSG00000168334|chr3:39186044-39186044|C/-|frameshift_variant;XIRP1|p.G1198Afs*29|1|0.11|ENSG00000168334|chr3:39185853-39185853|C/-|frameshift_variant	ENSG00000168334|ENST00000340369|XIRP1	ENSG00000168334|ENST00000340369|XIRP1	MSMS	HCT116MG_D190212_S4	4	512.2709350585938	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.986	1	38.606	38.106	39.106	-0.38079								0	0	0	0.90023	1	14309	14309		15.847	5.0233	1				4165	5002	2178	2203	4087	4087					0.01806330486465413
ATAEDSGNSSD	11	Unmodified	_ATAEDSGNSSD_					0	0	0		nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	MSMS	HCT116MG_D190212_S3	3	527.20361328125	2	527.20199	1052.38943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.769	1	14.851	14.351	15.351	0.082965								0	0	0	0.94416	1	4781	4781		9.3831	2.0939	1				4166	3753	2179	2204	4088	4088					-0.13467283939644403
ATAEGHPAGPG	11	Unmodified	_ATAEGHPAGPG_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	HCT116MG_D190212_S3	3	482.72772216796875	2	482.727781	963.441008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.452	1	19.511	19.011	20.011	0.05983								0	0	0	0.71631	1	6671	6671		37.974	10.345	1				4167	2966	2180	2205	4089	4089					-0.042174506644187204
ATAEGHPAGPG	11	Unmodified	_ATAEGHPAGPG_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	HCT116MG_D190212_S4	4	482.7278747558594	2	482.727781	963.441008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.59	1	19.397	18.897	19.897	-0.19367								0	0	0	0.81739	1	6654	6654		30.637	0	1				4168	2966	2180	2205	4090	4090					-0.042174506644187204
ATAEIIDKD	9	Unmodified	_ATAEIIDKD_					0	0	0		tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	488.2527770996094	2	488.253297	974.492041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.63	1	30.266	29.766	30.766	-0.36416								0	0	0	0.50556	1	11085	11085		28.487	0	1				4169	18401	2181	2206	4091	4091					0.0037745358976053467
ATAEPQSAP	9	Unmodified	_ATAEPQSAP_					0	0	0			REV__ENST00000606448.1_1_13:103047077-103047416:+|nuORF	REV__ENST00000606448.1_1_13:103047077-103047416:+|nuORF	MSMS	HCT116MG_D190212_S4	4	436.2113037109375	2	436.211432	870.408311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.463	1	25.184	24.684	25.684	-0.27958								0	0	0	0.71969	1	9025	9025		18.135	4.6271	1		+		4170	16770	2182	2207	4092	4092					-0.03207657787288554
ATAEQQERF	9	Unmodified	_ATAEQQERF_					0	0	0		ENST00000591857.5_1_17:73953534-73975166:-|nuORF;ACOX1|p.N501Tfs*6|1|0.47|ENSG00000161533|chr17:75949577-75949577|T/-|frameshift_variant;nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	ENST00000591857.5_1_17:73953534-73975166:-|nuORF	ENST00000591857.5_1_17:73953534-73975166:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	540.259033203125	2	540.259445	1078.50434	0.43758	0.00023641	0.012544	6.777E-06	0.45013	0.00024319	540.2593235577392	19.852	1.2898	19.658	18.862	20.152	-0.19367					39	24	2	0	0	0	0.49914	1	6957	6957		16.942	3.0362	1	2863200			4171	26	2183	2208	4093	4093					-0.03177509947181534
ATAERIDEF	9	Unmodified	_ATAERIDEF_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MSMS	HCT116MG_D190212_S4	4	526.2569580078125	2	526.256371	1050.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.143	1	27.811	27.311	28.311	-0.33138								0	0	0	0.67254	1	10107	10107		20.415	1.1575	1				4172	2225	2184	2209	4094	4094					-0.025040281787141794
ATAERIDEFI	10	Unmodified	_ATAERIDEFI_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MSMS	HCT116MG_D190212_S4	4	582.7960815429688	2	582.798403	1163.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.442	1	22.214	21.714	22.714	-0.22777								0	0	0	0.90892	1	7807	7807		13.906	4.5229	1				4173	2225	2185	2210	4095	4095					0.007005029181982536
ATAERIHQ	8	Unmodified	_ATAERIHQ_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MSMS	HCT116MG_D190212_S4	4	463.2464599609375	2	463.246141	924.477728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.018	1	18.832	18.332	19.332	-0.18674								0	0	0	0.87079	1	6423	6423		16.942	2.104	1		+		4174	10648	2186	2211	4096	4096					0.012468459521414843
ATAERSSGVAP	11	Unmodified	_ATAERSSGVAP_					0	0	0		nc|ENSG00000008056|P17600-2|SYN1;ENSG00000008056|ENST00000295987|SYN1	nc|ENSG00000008056|P17600-2|SYN1	nc|ENSG00000008056|P17600-2|SYN1	MSMS	HCT116MG_D190212_S3	3	523.266845703125	2	523.26727	1044.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.034	1	17.119	16.619	17.619	0.084467								0	0	0	0.93552	1	5695	5695		13.906	3.0821	1				4175	856	2187	2212	4097	4097					-0.0004922343014186481
ATAESDHYKQ	10	Unmodified	_ATAESDHYKQ_					0	0	0		ENST00000312814.10_1_7:112424973-112430236:-|nuORF	ENST00000312814.10_1_7:112424973-112430236:-|nuORF	ENST00000312814.10_1_7:112424973-112430236:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	575.2626953125	2	575.262185	1148.50982	0.35196	0.00020247	0.0094045	5.41E-06	0.36136	0.00020788	575.2621248072787	23.507	0.31207	23.259	23.116	23.428	-0.24775					7	5	2	0	0	0	0.77749	1	8244	8244		13.906	2.4113	1	1826500			4176	7068	2188	2213	4098	4098					-0.05849831155387619
ATAESMSAY	9	Unmodified	_ATAESMSAY_					0	0	0		tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1	tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1	tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	465.239990234375	2	465.6973	929.380048	0.3165	0.00014739	0.022633	1.054E-05	0.33913	0.00015793	465.6971343028135	23.847	0.26077	23.464	23.351	23.612	-0.38324					6	4	2	0	0	0	0.25723	1	8480	8480		4.3292	0	1	3156700			4177	18523	2189	2214	4099	4099					-0.08746723758883945
ATAESMSAY	9	Unmodified	_ATAESMSAY_					0	0	0		tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1	tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1	tr|U7SYZ5|U7SYZ5_FUSNUEthanolamineammonia-lyasesmallsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=eutCPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	465.6983947753906	2	465.6973	929.380048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.909	1	19.957	19.457	20.457	0.048107								0	0	0	0.76575	1	6855	6855		15.847	1.2655	1				4178	18523	2189	2214	4100	4100					-0.08746723758883945
ATAESRSLSPP	11	Unmodified	_ATAESRSLSPP_					0	0	0			REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	MSMS	HCT116MG_D190212_S3	3	558.2888793945312	2	558.288202	1114.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.676	1	22.657	22.157	23.157	-0.018869								0	0	0	0.93552	1	7968	7968		13.906	2.2658	1		+		4179	16631	2190	2215	4101	4101					0.00915332258387025
ATAETDLAKRF	11	Unmodified	_ATAETDLAKRF_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MSMS	HCT116MG_D190212_S1	1	611.9885864257812	2	611.824952	1221.63535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.274	1	32.274	31.774	32.774	0								0	0	0	0.93456	1	11904	11904		14.405	5.66	1				4180	4260	2191	2216	4102	4102					0.03339880700832509
ATAFILLFF	9	Unmodified	_ATAFILLFF_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	HCT116MG_D190212_S1	1	521.8043212890625	2	521.802229	1041.5899	0.31516	0.00016445	2.6953	0.0014064	3.0105	0.0015709	521.8038080297988	25.483	0.26084	25.483	25.353	25.614	0					7	4	2	0	0	0	0.26009	1	9202	9202		6.7232	1.9672	1	4025100	+		4181	13952	2192	2217	4103	4103					0.07077306976430009
ATAFLDVPP	9	Unmodified	_ATAFLDVPP_					0	0	0			REV__nc|ENSG00000065609|O60641-3|SNAP91	REV__nc|ENSG00000065609|O60641-3|SNAP91	MULTI-MSMS	HCT116MG_D190212_S3	3	466.73358154296875	2	465.750193	929.485833	0.30416	0.00014166	-3.2521	-0.0015147	-2.9479	-0.001373	465.7483493103492	21.808	0.62561	21.809	21.677	22.302	0.00074577					17	11	3	0	0	0	0.47829	2	7613	7613;7652		18.135	1.4171	1	2577100	+		4182	10705	2193	2218	4104;4105	4104					0.018269801488941084
ATAFWWGEW	9	Unmodified	_ATAFWWGEW_					0	0	0		ADAMTSL2|p.D44N|1|0.44|ENSG00000197859|chr9:133537444-133537444|G/A|missense_variant;ADAMTSL2|p.T91Rfs*126|1|0.27|ENSG00000197859|chr9:133538387-133538387|C/-|frameshift_variant;ADAMTSL2|p.R420Gfs*50|2|0.36|ENSG00000197859|chr9:133554669-133554669|C/-|frameshift_variant;ENSG00000197859|ENST00000651351|ADAMTSL2	ADAMTSL2|p.D44N|1|0.44|ENSG00000197859|chr9:133537444-133537444|G/A|missense_variant	ADAMTSL2|p.D44N|1|0.44|ENSG00000197859|chr9:133537444-133537444|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	577.1265258789062	2	577.258717	1152.50288	0.25578	0.00014765	1.7213	0.00099365	1.9771	0.0011413	577.2594769816777	18.562	0.88138	18.381	17.63	18.511	-0.18052					18	16	2	0	0	0	0.23301	1	6275	6275		15.847	3.6065	1	1369400			4183	52	2194	2219	4106	4106					-0.06727099245313184
ATAGCCVLLAP	11	Unmodified	_ATAGCCVLLAP_					0	0	0			REV__ENSG00000130876|ENST00000253188|SLC7A10	REV__ENSG00000130876|ENST00000253188|SLC7A10	MSMS	HCT116MG_D190212_S4	4	509.75732421875	2	509.756638	1017.49872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.688	1	18.507	18.007	19.007	-0.18052								0	0	0	0.91433	1	6289	6289		18.146	0.011366	1		+		4184	11944	2195	2220	4107	4107					-0.009326480548565996
ATAGCTCNVKT	11	Unmodified	_ATAGCTCNVKT_					0	0	0			REV__SPO11|p.D340Efs*6|1|0.03|ENSG00000054796|chr20:57342788-57342789|-/ATGTC|frameshift_variant	REV__SPO11|p.D340Efs*6|1|0.03|ENSG00000054796|chr20:57342788-57342789|-/ATGTC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7466430664062	2	534.744259	1067.47396	0.44492	0.00023792	4.2848	0.0022913	4.7298	0.0025292	534.7456446535726	19.56	0.46885	19.62	19.542	20.011	0.05983					12	8	2	0	0	0	0.7259	1	6752	6752		12.241	2.1667	1	1894300	+		4185	10638	2196	2221	4108	4108					-0.05707327928257655
ATAGDDVSSE	10	Unmodified	_ATAGDDVSSE_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MSMS	HCT116MG_D190212_S4	4	476.1878356933594	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.133	1	21.905	21.405	22.405	-0.22777								0	0	0	0.90892	1	7682	7682		13.906	1.6654	1		+		4186	16744	2197	2222	4109	4109					-0.09429177100366815
ATAGDDVSSE	10	Unmodified	_ATAGDDVSSE_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MSMS	HCT116MG_D190212_S4	4	476.198486328125	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.567	1	22.33	21.83	22.83	-0.23758								0	0	0	0.92607	1	7857	7857		10.074	0.6908	1		+		4187	16744	2197	2222	4110	4110					-0.09429177100366815
ATAGDIAHY	9	Unmodified	_ATAGDIAHY_					0	0	0		OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant;ENSG00000140961|ENST00000393306|OSGIN1	OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant	OSGIN1|p.T288Pfs*18|1|0.47|ENSG00000140961|chr16:83965181-83965181|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	459.7196044921875	2	459.719424	917.424296	0.13896	6.3883E-05	0.30097	0.00013836	0.43993	0.00020225	459.71944213786094	20.485	1.5538	20.284	19.525	21.079	-0.20133					58	29	3	0	0	0	0.33687	1	6898	6898		26.884	1.4843	1	18124000			4188	3695	2198	2223	4111	4111					-0.03771951550390895
ATAGDYLQDH	10	Unmodified	_ATAGDYLQDH_					0	0	0			REV__nc|ENSG00000154065|Q8N6D5-3|ANKRD29	REV__nc|ENSG00000154065|Q8N6D5-3|ANKRD29	MSMS	HCT116MG_D190212_S4	4	545.7691040039062	2	545.743628	1089.4727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.979	1	17.804	17.304	18.304	-0.17501								0	0	0	0.90475	1	6003	6003		14.838	1.7958	1		+		4189	12668	2199	2224	4112	4112					-0.06845502701139594
ATAGECVPESC	11	Unmodified	_ATAGECVPESC_					0	0	0		ENST00000332896.7_1_12:94244043-94244259:+|nuORF	ENST00000332896.7_1_12:94244043-94244259:+|nuORF	ENST00000332896.7_1_12:94244043-94244259:+|nuORF	MSMS	HCT116MG_D190212_S3	3	533.7105712890625	2	533.712624	1065.4107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.687	1	23.64	23.14	24.14	-0.046839								0	0	0	0.93295	1	8375	8375		15.248	7.3383	1				4190	7170	2200	2225	4113	4113					-0.11939313436141674
ATAGEPSPHGQ	11	Unmodified	_ATAGEPSPHGQ_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	MULTI-MSMS	HCT116MG_D190212_S4	4	526.7455444335938	2	526.243795	1050.47304	-0.13936	-7.3335E-05	0.48084	0.00025304	0.34148	0.0001797	526.2440053393573	16.762	1.2031	16.595	15.716	16.919	-0.16664					43	23	3	0	0	0	0.70377	1	5617	5617		20.415	3.3016	1	1882500	+		4191	14476	2201	2226	4114	4114					-0.05018082981291627
ATAGFNQVLNY	11	Unmodified	_ATAGFNQVLNY_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MULTI-MSMS	HCT116MG_D190212_S4	4	599.299072265625	2	599.29857	1196.58259	1.1981	0.000718	-0.62843	-0.00037662	0.56963	0.00034138	599.2983748556599	27.947	0.87377	27.626	27.096	27.97	-0.32157					37	16	3	0	0	0	0.70377	1	9958	9958		20.415	1.0526	1	6342400			4192	3381	2202	2227	4115	4115					-0.007840773619591346
ATAGFNQVLNY	11	Unmodified	_ATAGFNQVLNY_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MULTI-MATCH	HCT116MG_D190212_S2	2		2	599.29857	1196.58259	0.70693	0.00042366	0.29217	0.0001751	0.9991	0.00059876	599.2986652332888	27.719	0.46383	27.377	27.191	27.655	-0.34201	-0.12429	0.00092214	NaN	20.415	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8164000			4193	3381	2202	2227							-0.007840773619591346
ATAGFSYEKW	10	Unmodified	_ATAGFSYEKW_					0	0	0		ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	MSMS	HCT116MG_D190212_S3	3	580.2725830078125	2	580.274564	1158.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.335	1	33.045	32.545	33.545	-0.29013								0	0	0	0.25519	1	12230	12230		63.961	37.692	1				4194	1305	2203	2228	4116	4116					-0.03835151282009974
ATAGFSYEKW	10	Unmodified	_ATAGFSYEKW_					0	0	0		ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	MSMS	HCT116MG_D190212_S4	4	580.2727661132812	2	580.274564	1158.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.281	1	32.898	32.398	33.398	-0.38223								0	0	0	0.32977	1	12115	12115		57.722	27.881	1				4195	1305	2203	2228	4117	4117					-0.03835151282009974
ATAGFSYEKW	10	Unmodified	_ATAGFSYEKW_					0	0	0		ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	MSMS	HCT116MG_D190212_S4	4	580.2657470703125	2	580.274564	1158.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.855	1	33.471	32.971	33.971	-0.38426								0	0	0	0.88261	1	12339	12339		18.146	6.6516	1				4196	1305	2203	2228	4118	4118					-0.03835151282009974
ATAGFYEYG	9	Unmodified	_ATAGFYEYG_					0	0	0		RBM20|p.L408Sfs*17|2|0.33|ENSG00000203867|chr10:110781826-110781826|C/-|frameshift_variant;RBM20|p.L538Gfs*12|1|0.05|ENSG00000203867|chr10:110797590-110797591|-/TGGCTAT|frameshift_variant;RBM20|p.H797Ifs*113|1|0.28|ENSG00000203867|chr10:110812782-110812782|C/-|frameshift_variant;RBM20|p.N1096Tfs*8|1|0.27|ENSG00000203867|chr10:110821903-110821903|A/-|frameshift_variant;RBM20|p.A1208Gfs*3|1|0.41|ENSG00000203867|chr10:110835911-110835912|-/G|frameshift_variant;ENSG00000203867|ENST00000369519|RBM20	RBM20|p.L408Sfs*17|2|0.33|ENSG00000203867|chr10:110781826-110781826|C/-|frameshift_variant	RBM20|p.L408Sfs*17|2|0.33|ENSG00000203867|chr10:110781826-110781826|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	489.71343994140625	2	489.713808	977.413062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.107	1	16.937	16.437	17.437	-0.17014								0	0	0	0.76694	1	5651	5651		11.64	0	1				4197	6314	2204	2229	4119	4119					-0.07654773644526358
ATAGLLLGEPD	11	Unmodified	_ATAGLLLGEPD_					0	0	0			REV__SIX5|p.G712Vfs*14|2|0.39|ENSG00000177045|chr19:45765586-45765586|C/-|frameshift_variant	REV__SIX5|p.G712Vfs*14|2|0.39|ENSG00000177045|chr19:45765586-45765586|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	528.7825927734375	2	528.782222	1055.54989	0.42837	0.00022651	1.8291	0.00096722	2.2575	0.0011937	528.7828289439457	25.373	0.41724	24.998	24.764	25.181	-0.37521					11	7	2	0	0	0	0.67041	1	9172	9172		27.629	4.8925	1	7905100	+		4198	13560	2205	2230	4120	4120					0.024337155151897605
ATAGLRHSE	9	Unmodified	_ATAGLRHSE_					0	0	0		ENST00000490203.5_1_1:201979803-201981353:+|nuORF	ENST00000490203.5_1_1:201979803-201981353:+|nuORF	ENST00000490203.5_1_1:201979803-201981353:+|nuORF	MSMS	HCT116MG_D190212_S4	4	471.7246398925781	2	471.243598	940.472643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.884	1	36.499	35.999	36.999	-0.38486								0	0	0	0.76575	1	13515	13515		15.847	0.078963	1				4199	8331	2206	2231	4121	4121					2.5420895212846517E-05
ATAGPGPRPA	10	Unmodified	_ATAGPGPRPA_					0	0	0			REV__nc|ENSG00000277200|A0A8I5KY20|CCDC92B	REV__nc|ENSG00000277200|A0A8I5KY20|CCDC92B	MULTI-MSMS	HCT116MG_D190212_S3	3	447.7431335449219	2	447.743234	893.471915	0.076636	3.4313E-05	-0.028352	-1.2694E-05	0.048284	2.1619E-05	447.7431808575383	22.163	0.41659	22.164	21.938	22.354	0.00074577					10	7	2	0	0	0	0.73913	1	7771	7771		17.113	0.96379	1	4702300	+		4200	17319	2207	2232	4122	4122					0.020917474404654968
ATAGPGPRPA	10	Unmodified	_ATAGPGPRPA_					0	0	0			REV__nc|ENSG00000277200|A0A8I5KY20|CCDC92B	REV__nc|ENSG00000277200|A0A8I5KY20|CCDC92B	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	447.743234	893.471915	0.076636	3.4313E-05	-0.028352	-1.2694E-05	0.048284	2.1619E-05	447.7431808575383	22.163	0.41659	22.164	21.938	22.354	0.00074577	0	0	NaN	17.113	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4702300	+		4201	17319	2207	2232							0.020917474404654968
ATAGPHPSTPS	11	Unmodified	_ATAGPHPSTPS_					0	0	0			REV__ENST00000533465.1_1_11:65349377-65351970:+|nuORF	REV__ENST00000533465.1_1_11:65349377-65351970:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	511.7491455078125	2	511.748713	1021.48287	0.25231	0.00012912	0.32504	0.00016634	0.57735	0.00029546	511.7488151682145	19.503	0.36466	19.503	19.287	19.652	0					9	6	2	0	0	0	0.52486	1	6782	6782		43.772	5.1576	1	2235500	+		4202	16326	2208	2233	4123	4123					-0.027008949759192546
ATAGPHPSTPS	11	Unmodified	_ATAGPHPSTPS_					0	0	0			REV__ENST00000533465.1_1_11:65349377-65351970:+|nuORF	REV__ENST00000533465.1_1_11:65349377-65351970:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	511.7487487792969	2	511.748713	1021.48287	0.16247	8.3142E-05	-0.728	-0.00037255	-0.56553	-0.00028941	511.7485398672527	18.607	0.72927	18.678	18.2	18.929	0.071436					21	13	2	0	0	0	0.48186	1	6345	6345		47.749	2.0491	1	4002300	+		4203	16326	2208	2233	4124	4124					-0.027008949759192546
ATAGPHPSTPS	11	Unmodified	_ATAGPHPSTPS_					0	0	0			REV__ENST00000533465.1_1_11:65349377-65351970:+|nuORF	REV__ENST00000533465.1_1_11:65349377-65351970:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	512.250244140625	2	511.748713	1021.48287	0.20096	0.00010284	0.15649	8.0084E-05	0.35745	0.00018292	511.74876406361795	19.602	0.87403	19.408	19.122	19.996	-0.19367					22	16	2	0	0	0	0.27854	1	6628	6628		66.457	9.3491	1	22784000	+		4204	16326	2208	2233	4125	4125					-0.027008949759192546
ATAGPHPSTPS	11	Unmodified	_ATAGPHPSTPS_					0	0	0			REV__ENST00000533465.1_1_11:65349377-65351970:+|nuORF	REV__ENST00000533465.1_1_11:65349377-65351970:+|nuORF	MSMS	HCT116MG_D190212_S4	4	511.7486267089844	2	511.748713	1021.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.636	1	20.435	19.935	20.935	-0.20133								0	0	0	0.35655	1	7076	7076		53.833	9.9745	1		+		4205	16326	2208	2233	4126	4126					-0.027008949759192546
ATAGPPDGHVS	11	Unmodified	_ATAGPPDGHVS_					0	0	0			REV__CRLF1|p.E86*|1|0.35|ENSG00000006016|chr19:18599707-18599708|-/G|frameshift_variant	REV__CRLF1|p.E86*|1|0.35|ENSG00000006016|chr19:18599707-18599708|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	504.7411193847656	2	504.740888	1007.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.754	1	18.823	18.323	19.323	0.069159								0	0	0	0.81249	1	6389	6389		31.268	2.7738	1		+		4206	10295	2209	2234	4127	4127					-0.03621181492951564
ATAGPSHGQG	10	Unmodified	_ATAGPSHGQG_					0	0	0			REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	441.7069396972656	2	441.706848	881.399144	0.04699	2.0756E-05	0.30197	0.00013338	0.34896	0.00015414	441.7068670925123	16.542	0.36406	16.627	16.393	16.757	0.085424					10	6	2	0	0	0	0.40515	1	5487	5487		41.84	13.353	1	1811300	+		4207	9895	2210	2235	4128	4128					-0.04630006352942928
ATAGPSHGQG	10	Unmodified	_ATAGPSHGQG_					0	0	0			REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	441.7068786621094	2	441.706848	881.399144	-0.30014	-0.00013257	0.86787	0.00038334	0.56773	0.00025077	441.70719714921165	16.658	0.34692	16.491	16.261	16.608	-0.16664					10	6	3	0	0	0	0.51145	1	5468	5468		34.402	12.655	1	920730	+		4208	9895	2210	2235	4129	4129					-0.04630006352942928
ATAGPSHGQG	10	Unmodified	_ATAGPSHGQG_					0	0	0			REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	441.706848	881.399144	0.04699	2.0756E-05	0.30197	0.00013338	0.34896	0.00015414	441.7068670925123	16.542	0.36406	16.627	16.393	16.757	0.085424	0.067993	-0.00023042	NaN	41.84	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1811300	+		4209	9895	2210	2235							-0.04630006352942928
ATAGPSHGQG	10	Unmodified	_ATAGPSHGQG_					0	0	0			REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	441.706848	881.399144	-0.30014	-0.00013257	0.86787	0.00038334	0.56773	0.00025077	441.70719714921165	16.658	0.34692	16.491	16.261	16.608	-0.16664	-0.067993	0.0002695	NaN	41.84	10	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920730	+		4210	9895	2210	2235							-0.04630006352942928
ATAGRRPE	8	Unmodified	_ATAGRRPE_					0	0	0			REV__ENST00000474461.1_1_1:876467-878232:+|nuORF	REV__ENST00000474461.1_1_1:876467-878232:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.2336730957031	2	429.233033	856.451513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.03	1	23.772	23.272	24.272	-0.25816								0	0	0	0.8837	1	8445	8445		8.5933	2.8329	1		+		4211	15898	2211	2236	4130	4130					0.01754576780649586
ATAGRWLPLCW	11	Unmodified	_ATAGRWLPLCW_					0	0	0		sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1;sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2;sp|C0H677|UL298_HCMVAProteinUL29/UL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=1SV=1	sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1	sp|P16847|UL28_HCMVAUncharacterizedproteinUL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL28PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	637.7985229492188	2	637.32915	1272.64375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.495	1	32.217	31.717	32.717	-0.27841								0	0	0	0.94538	1	11912	11912		8.7454	0.58988	1				4212	18187	2212	2237	4131	4131					0.018331561364902882
ATAGRWTSTAP	11	Unmodified	_ATAGRWTSTAP_					0	0	0			REV__HGFAC|p.R190Gfs*57|1|0.54|ENSG00000109758|chr4:3444127-3444127|C/-|frameshift_variant	REV__HGFAC|p.R190Gfs*57|1|0.54|ENSG00000109758|chr4:3444127-3444127|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	560.248779296875	2	559.783087	1117.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.222	1	19.286	18.786	19.786	0.064419								0	0	0	0.8787	1	6578	6578		22.736	4.5899	1		+		4213	16884	2213	2238	4132	4132					-0.0024523067620521033
ATAGVVTSV	9	Unmodified	_ATAGVVTSV_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-MSMS	HCT116MG_D190212_S1	1	804.4471435546875	1	804.44616	803.438883	1.0203	0.00082075	0.33152	0.00026669	1.3518	0.0010874	804.4460303022137	32.889	0.29427	32.889	32.742	33.037	0					8	5	2	0	0	0	0.016134	1	12186	12186		100.37	32.291	1	7821100			4214	916	2214	2239	4133	4133					0.02930120597750374
ATAGWLVSLVL	11	Unmodified	_ATAGWLVSLVL_					0	0	0		ENST00000584246.1_1_17:72773463-72781743:+|nuORF;nc|ENSG00000109066|Q8NE00-2|TMEM104;TMEM104|p.V362Sfs*13|1|0.42|ENSG00000109066|chr17:74836276-74836276|C/-|frameshift_variant;TMEM104|p.F356Sfs*19|1|0.13|ENSG00000109066|chr17:74836259-74836259|T/-|frameshift_variant;ENSG00000109066|ENST00000335464|TMEM104	ENST00000584246.1_1_17:72773463-72781743:+|nuORF	ENST00000584246.1_1_17:72773463-72781743:+|nuORF	MSMS	HCT116MG_D190212_S2	2	565.3334350585938	2	565.334424	1128.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.519	1	21.135	20.635	21.635	-0.38475								0	0	0	0.94538	1	7578	7578		8.7454	2.0222	1				4215	2192	2215	2240	4134	4134					0.0951146206255089
ATAGWPRPQAE	11	Unmodified	_ATAGWPRPQAE_					0	0	0			REV__ENST00000514773.1_1_5:141248719-141258783:-|nuORF	REV__ENST00000514773.1_1_5:141248719-141258783:-|nuORF	MSMS	HCT116MG_D190212_S3	3	592.2958374023438	2	592.296362	1182.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.599	1	19.658	19.158	20.158	0.05983								0	0	0	0.92983	1	6730	6730		16.149	1.3108	1		+		4216	16202	2216	2241	4135	4135					-0.0058154178489076
ATAHSPLSA	9	Unmodified	_ATAHSPLSA_					0	0	0		ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-5|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80	ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	MULTI-MSMS	HCT116MG_D190212_S2	2	427.7220764160156	2	427.721967	853.429381	0.23458	0.00010033	0.1183	5.0598E-05	0.35287	0.00015093	427.72191227672243	23.936	0.20765	23.553	23.456	23.663	-0.38324					8	3	3	0	0	0	0.11731	1	8574	8574		54.774	7.0249	1	8126100			4217	3863	2217	2242	4136	4136					-0.0031964768776333585
ATAHSPLSA	9	Unmodified	_ATAHSPLSA_					0	0	0		ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-5|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80	ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	MULTI-MSMS	HCT116MG_D190212_S3	3	427.7218017578125	2	427.721967	853.429381	0.13493	5.7711E-05	-0.51058	-0.00021839	-0.37565	-0.00016067	427.72186502566865	23.422	0.26059	23.382	23.239	23.5	-0.03968					6	4	2	0	0	0	0.14972	1	8290	8290		48.346	0	1	4428400			4218	3863	2217	2242	4137	4137					-0.0031964768776333585
ATAIAIHRA	9	Unmodified	_ATAIAIHRA_					0	0	0		nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4;ENSG00000196440|ENST00000423738|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	MSMS	HCT116MG_D190212_S2	2	462.2747497558594	2	462.274701	922.534849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.655	1	16.313	15.813	16.813	-0.34183								0	0	0	0.76834	1	5619	5619		6.7232	1.4925	1				4219	6071	2218	2243	4138	4138					0.07048313228506231
ATAKLDKV	8	Unmodified	_ATAKLDKV_					0	0	0		ENST00000478998.5_1_3:108124174-108178278:-|nuORF;MYH15|p.T1279Ifs*7|1|0.04|ENSG00000144821|chr3:108421141-108421142|-/ATAA|frameshift_variant;MYH15|p.E1364Vfs*7|1|0.04|ENSG00000144821|chr3:108414346-108414347|-/GGAGTTA|frameshift_variant;ENSG00000144821|ENST00000693548|MYH15	ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENST00000478998.5_1_3:108124174-108178278:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	423.25811767578125	2	423.258185	844.501818	-0.028209	-1.194E-05	0.36038	0.00015254	0.33217	0.0001406	423.2581660618547	21.122	0.20811	21.157	21.079	21.287	0.034473					5	3	2	0	0	0	0.095352	1	7374	7374		96.111	14.221	1	5568300			4220	3887	2219	2244	4139	4139					0.07334686385809164
ATAKSGPVKPP	11	Unmodified	_ATAKSGPVKPP_					0	0	0			REV__nc|ENSG00000131233|P57773-2|GJA9	REV__nc|ENSG00000131233|P57773-2|GJA9	MSMS	HCT116MG_D190212_S3	3	351.5412292480469	3	351.541475	1051.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.389	1	29.167	28.667	29.667	-0.22195								0	0	0	0.94012	1	10675	10675		6.2344	0.83165	1		+		4221	17128	2220	2245	4140	4140					0.07885718368675043
ATALLHFPFF	10	Unmodified	_ATALLHFPFF_					0	0	0			REV__ENST00000357606.7_1_12:56221676-56222300:-|nuORF	REV__ENST00000357606.7_1_12:56221676-56222300:-|nuORF	MSMS	HCT116MG_D190212_S3	3	582.3158569335938	2	582.316035	1162.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.333	1	30.084	29.584	30.584	-0.24946								0	0	0	0.92272	1	11052	11052		10.824	0.75	1		+		4222	10392	2221	2246	4141	4141					0.04271210236652223
ATALRWWRR	9	Unmodified	_ATALRWWRR_					0	0	0		ENST00000419234.8_1_12:112123634-112123766:-|nuORF	ENST00000419234.8_1_12:112123634-112123766:-|nuORF	ENST00000419234.8_1_12:112123634-112123766:-|nuORF	MSMS	HCT116MG_D190212_S4	4	608.3494262695312	2	608.346523	1214.67849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.353	1	34.967	34.467	35.467	-0.38606								0	0	0	0.76902	1	12945	12945		4.3292	1.0479	1				4223	7772	2222	2247	4142	4142					0.07974160059416135
ATANLKDADH	10	Unmodified	_ATANLKDADH_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MSMS	HCT116MG_D190212_S2	2	528.2955322265625	2	528.259445	1054.50434	0.054228	2.8647E-05	-0.2671	-0.0001411	-0.21287	-0.00011245	528.2592928323505	18.45	0.3136	18.087	17.851	18.165	-0.36325					7	5	2	0	0	0	0.48679	1	6356	6356		36.127	1.195	1	6182400	+		4224	14241	2223	2248	4143	4143					-0.020735099472176444
ATAPCCLRCPP	11	Unmodified	_ATAPCCLRCPP_					0	0	0			REV__ENSG00000131116|ENST00000300811|ZNF428	REV__ENSG00000131116|ENST00000300811|ZNF428	MSMS	HCT116MG_D190212_S4	4	566.2570190429688	2	566.259022	1130.50349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.109	1	26.797	26.297	27.297	-0.3114								0	0	0	0.91433	1	9689	9689		18.146	2.2992	1		+		4225	11957	2224	2249	4144	4144					-0.056540871837569284
ATAPEARVLPK	11	Unmodified	_ATAPEARVLPK_					0	0	0		nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	MSMS	HCT116MG_D190212_S2	2	576.7859497070312	2	576.840405	1151.66626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.222	1	24.847	24.347	25.347	-0.37521								0	0	0	0.94012	1	9073	9073		11.495	0.67078	1				4226	4431	2225	2250	4145	4145					0.09649078805750833
ATAPGHGPQ	9	Unmodified	_ATAPGHGPQ_					0	0	0		AXL|p.P337Lfs*29|1|0.33|ENSG00000167601|chr19:41238480-41238480|C/-|frameshift_variant;ENST00000599659.5_1_19:41725288-41749617:+|nuORF;nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL;AXL|p.R190H|1|0.5|ENSG00000167601|chr19:41222039-41222039|G/A|missense_variant	AXL|p.P337Lfs*29|1|0.33|ENSG00000167601|chr19:41238480-41238480|C/-|frameshift_variant	AXL|p.P337Lfs*29|1|0.33|ENSG00000167601|chr19:41238480-41238480|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	417.8655700683594	2	418.206484	834.398415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.937	1	17.021	16.521	17.521	0.084467								0	0	0	0.59795	1	5656	5656		24.021	0.87215	1				4227	240	2226	2251	4146	4146					-0.025408010020100846
ATAPHHRHSSP	11	Unmodified	_ATAPHHRHSSP_					0	0	0			REV__ENST00000602130.5_1_19:41808830-41812642:+|nuORF	REV__ENST00000602130.5_1_19:41808830-41812642:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	598.7928466796875	2	599.297227	1196.5799	0.58699	0.00035178	-0.50429	-0.00030222	0.0827	4.9562E-05	599.2963057497188	28.191	1.5102	27.985	26.875	28.385	-0.20593					54	28	3	0	0	0	0.34567	1	10197	10197		10.151	0	1	7453500	+		4228	16750	2227	2252	4147	4147					-0.010524879762670025
ATAPIHHSIP	10	Unmodified	_ATAPIHHSIP_					0	0	0			REV__RNF111|p.P773Hfs*44|5|0.42|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	REV__RNF111|p.P773Hfs*44|5|0.42|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	522.2831420898438	2	522.285266	1042.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.907	1	18.539	18.039	19.039	-0.36812								0	0	0	0.90475	1	6526	6526		14.838	0.93222	1		+		4229	12752	2228	2253	4148	4148					0.03640278537386621
ATAPNKPPA	9	Unmodified	_ATAPNKPPA_					0	0	0		ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	MSMS	HCT116MG_D190212_S4	4	433.7400817871094	2	433.74016	865.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.566	1	28.235	27.735	28.735	-0.33138								0	0	0	0.64498	1	10278	10278		21.747	1.293	1				4230	2692	2229	2254	4149	4149					0.0276522920894422
ATAPNYGSHGN	11	Unmodified	_ATAPNYGSHGN_					0	0	0			REV__COL8A2|p.G610A|1|0.43|ENSG00000171812|chr1:36097852-36097852|C/G|missense_variant	REV__COL8A2|p.G610A|1|0.43|ENSG00000171812|chr1:36097852-36097852|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	544.7423095703125	2	544.741419	1087.46829	0.50533	0.00027527	-0.033933	-1.8485E-05	0.4714	0.00025679	544.7413491553567	28.075	1.4971	27.744	26.827	28.324	-0.33138					34	28	2	0	0	0	0.71643	1	10251	10251		15.739	1.8326	1	3003800	+		4231	10247	2230	2255	4150	4150					-0.07194967124041796
ATAPTATRPAP	11	Unmodified	_ATAPTATRPAP_					0	0	0			REV__ENST00000249014.4_2_22:37962663-37964285:+|nuORF	REV__ENST00000249014.4_2_22:37962663-37964285:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2877197265625	2	527.288005	1052.56146	0.43564	0.00022971	-0.15136	-7.9811E-05	0.28428	0.00014989	527.2878487062995	16.861	0.41639	16.519	16.256	16.672	-0.34183					13	7	2	0	0	0	0.48186	1	5726	5726		47.749	5.9091	1	3879500	+		4232	14579	2231	2256	4151	4151					0.0372795732916984
ATAPTATRPAP	11	Unmodified	_ATAPTATRPAP_					0	0	0			REV__ENST00000249014.4_2_22:37962663-37964285:+|nuORF	REV__ENST00000249014.4_2_22:37962663-37964285:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	527.288005	1052.56146	0.43564	0.00022971	-0.15136	-7.9811E-05	0.28428	0.00014989	527.2878487062995	16.861	0.41639	16.519	16.256	16.672	-0.34183	0	0	NaN	47.749	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3879500	+		4233	14579	2231	2256							0.0372795732916984
ATAQGGNF	8	Unmodified	_ATAQGGNF_					0	0	0		ENST00000607322.1_1_9:99973694-100000842:-|nuORF	ENST00000607322.1_1_9:99973694-100000842:-|nuORF	ENST00000607322.1_1_9:99973694-100000842:-|nuORF	MSMS	HCT116MG_D190212_S2	2	383.1800842285156	2	383.179935	764.345317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.268	1	22.883	22.383	23.383	-0.3852								0	0	0	0.70483	1	8284	8284		30.225	12.09	1				4234	9119	2232	2257	4152	4152					-0.046281787846623956
ATAQQCPHRTG	11	Unmodified	_ATAQQCPHRTG_					0	0	0		nc|ENSG00000099958|Q96Q80-3|DERL3	nc|ENSG00000099958|Q96Q80-3|DERL3	nc|ENSG00000099958|Q96Q80-3|DERL3	MULTI-MSMS	HCT116MG_D190212_S4	4	390.5205383300781	3	390.520856	1168.54074	0.027784	1.085E-05	-0.64014	-0.00024999	-0.61236	-0.00023914	390.5205219411007	28.385	0.26033	28.053	27.908	28.168	-0.33138					6	4	2	0	0	0	0.7259	1	10228	10228		6.6235	1.9075	1	3404000			4235	9403	2233	2258	4153	4153					-0.036789563221418575
ATAQSITYIG	10	Unmodified	_ATAQSITYIG_					0	0	0			REV__ENSG00000140740|ENST00000268379|UQCRC2	REV__ENSG00000140740|ENST00000268379|UQCRC2	MULTI-MSMS	HCT116MG_D190212_S1	1	513.2445068359375	2	512.769114	1023.52368	0.35595	0.00018252	1.2081	0.00061947	1.564	0.00080199	512.7690788274119	27.047	0.5206	27.047	26.813	27.334	0					15	9	3	0	0	0	0.64004	1	9774	9774		25.399	2.663	1	12811000	+		4236	12308	2234	2259	4154	4154					0.012854463437065533
ATAQSPPLSGP	11	Unmodified	_ATAQSPPLSGP_					0	0	0			REV__GRB10|p.A165T|1|0.24|ENSG00000106070|chr7:50669733-50669733|C/T|missense_variant	REV__GRB10|p.A165T|1|0.24|ENSG00000106070|chr7:50669733-50669733|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	513.2667236328125	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.985	1	23.727	23.227	24.227	-0.25816								0	0	0	0.91433	1	8427	8427		18.146	1.2041	1		+		4237	16857	2235	2260	4155	4155					0.0076456220097043115
ATAQVPVRSRR	11	Unmodified	_ATAQVPVRSRR_					0	0	0			REV__ENST00000478927.5_1_3:119298448-119301006:+|nuORF	REV__ENST00000478927.5_1_3:119298448-119301006:+|nuORF	MSMS	HCT116MG_D190212_S3	3	621.3484497070312	2	620.865277	1239.716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.717	1	35.418	34.918	35.918	-0.29922								0	0	0	0.95113	1	13173	13173		5.7319	0	1		+		4238	15876	2236	2261	4156	4156					0.10573206534400015
ATARIEEML	9	Unmodified	_ATARIEEML_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-4|HIP1	ENSG00000127946|ENST00000336926|HIP1	ENSG00000127946|ENST00000336926|HIP1	MSMS	HCT116MG_D190212_S1	1	517.2691650390625	2	517.270967	1032.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.651	1	18.651	18.151	19.151	0								0	0	0	0.76669	1	6423	6423		12.532	1.7076	1				4239	2981	2237	2262	4157	4157					0.01241792845917189
ATARTAFANA	10	Unmodified	_ATARTAFANA_					0	0	0			REV__TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant	REV__TNXB|p.G314Afs*257|1|0.07|ENSG00000168477|chr6:32096912-32096912|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	497.26495361328125	2	497.259248	992.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.297	1	15.957	15.457	16.457	-0.3399								0	0	0	0.88261	1	5475	5475		18.146	4.2403	1		+		4240	17652	2238	2263	4158	4158					0.007391151236106452
ATASCRQHPP	10	Unmodified	_ATASCRQHPP_					0	0	0		ENST00000466757.7_1_10:73472535-73475261:+|nuORF	ENST00000466757.7_1_10:73472535-73475261:+|nuORF	ENST00000466757.7_1_10:73472535-73475261:+|nuORF	MSMS	HCT116MG_D190212_S4	4	534.2965698242188	2	534.256182	1066.49781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.843	1	22.606	22.106	23.106	-0.23758								0	0	0	0.92607	1	7968	7968		10.074	0.6908	1				4241	8109	2239	2264	4159	4159					-0.03277726379565138
ATASSLSPD	9	Unmodified	_ATASSLSPD_					0	0	0			REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	424.70318603515625	2	424.70344	847.392327	0.13409	5.695E-05	-0.49816	-0.00021157	-0.36406	-0.00015462	424.7031575204525	25.269	0.31264	24.894	24.764	25.076	-0.37521					10	5	2	0	0	0	0.49914	1	9122	9122		16.942	5.302	1	20007000	+		4242	9899	2240	2265	4160	4160					-0.03747364024172839
ATASVIQAS	9	Unmodified	_ATASVIQAS_					0	0	0			REV__TEAD1|p.Y306Mfs*3|1|0.42|ENSG00000187079|chr11:12924950-12924950|T/-|frameshift_variant	REV__TEAD1|p.Y306Mfs*3|1|0.42|ENSG00000187079|chr11:12924950-12924950|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	425.3121337890625	2	424.229625	846.444697	-0.1628	-6.9063E-05	0.30455	0.0001292	0.14176	6.0137E-05	424.2296285149446	18.868	0.6258	18.504	18.372	18.998	-0.36342					19	11	3	0	0	0	0.41514	1	6524	6524		21.747	1.293	1	24099000	+		4243	13912	2241	2266	4161	4161					0.015332191094216796
ATATGTLGVD	10	Unmodified	_ATATGTLGVD_					0	0	0			REV__nc|ENSG00000140945|P55290-5|CDH13	REV__nc|ENSG00000140945|P55290-5|CDH13	MULTI-MSMS	HCT116MG_D190212_S3	3	453.232421875	2	453.232364	904.450176	0.026847	1.2168E-05	0.1495	6.7757E-05	0.17634	7.9925E-05	453.2323764021539	16.958	0.31233	17.042	16.912	17.225	0.084467					8	5	2	0	0	0	0.65652	1	5689	5689		24.021	5.8742	1	3158900	+		4244	12316	2242	2267	4162	4162					-0.005871020987456177
ATATPEEPPP	10	Unmodified	_ATATPEEPPP_					0	0	0			REV__SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant	REV__SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	505.244873046875	2	505.245472	1008.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.868	1	26.71	26.21	27.21	-0.15764								0	0	0	0.90023	1	9658	9658		15.847	1.9411	1		+		4245	12272	2243	2268	4163	4163					-0.027508329272791343
ATAVVSQGNIE	11	Unmodified	_ATAVVSQGNIE_					0	0	0			REV__nc|ENSG00000034053|Q99767-2|APBA2	REV__nc|ENSG00000034053|Q99767-2|APBA2	MSMS	HCT116MG_D190212_S2	2	544.7828979492188	2	544.782753	1087.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.35	1	24.975	24.475	25.475	-0.37521								0	0	0	0.85321	1	9125	9125		26.021	0.62139	1		+		4246	10575	2244	2269	4164	4164					0.010679298841068885
ATAVWHAYPI	10	Unmodified	_ATAVWHAYPI_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586;KIAA1586|p.S537Qfs*20|1|0.31|ENSG00000168116|chr6:57054105-57054105|T/-|frameshift_variant	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MSMS	HCT116MG_D190212_S3	3	564.7938232421875	2	564.795466	1127.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.967	1	34.67	34.17	35.17	-0.29707								0	0	0	0.92272	1	12890	12890		10.824	1.4408	1				4247	4984	2245	2270	4165	4165					0.017694491971724347
ATAWFTTWWVP	11	Unmodified	_ATAWFTTWWVP_					0	0	0			REV__ENST00000492555.5_1_3:52562203-52563345:-|nuORF	REV__ENST00000492555.5_1_3:52562203-52563345:-|nuORF	MSMS	HCT116MG_D190212_S4	4	683.3358764648438	2	683.334956	1364.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.472	1	24.203	23.703	24.703	-0.26881								0	0	0	0.94416	1	8624	8624		9.3831	0	1		+		4248	16054	2246	2271	4166	4166					-0.012383235685547334
ATAWGLAAV	9	Unmodified	_ATAWGLAAV_					0	0	0			REV__ENST00000595467.1_1_19:36037522-36037810:+|nuORF	REV__ENST00000595467.1_1_19:36037522-36037810:+|nuORF	MSMS	HCT116MG_D190212_S3	3	430.2354431152344	2	430.237253	858.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.279	1	23.24	22.74	23.74	-0.03968								0	0	0	0.74436	1	8211	8211		16.942	1.0951	1		+		4249	11265	2247	2272	4167	4167					0.02506130697270237
ATAWLARL	8	Unmodified	_ATAWLARL_					0	0	0		ENST00000607927.1_1_22:18560886-18561522:-|nuORF	ENST00000607927.1_1_22:18560886-18561522:-|nuORF	ENST00000607927.1_1_22:18560886-18561522:-|nuORF	MSMS	HCT116MG_D190212_S2	2	451.2662048339844	2	451.266345	900.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.303	1	27.973	27.473	28.473	-0.32987								0	0	0	0.8396	1	10318	10318		19.439	3.6708	1				4250	9123	2248	2273	4168	4168					0.06389812342570167
ATAWYTPDSAP	11	Unmodified	_ATAWYTPDSAP_					0	0	0			REV__nc|ENSG00000172478|Q08AI8-3|MAB21L4	REV__nc|ENSG00000172478|Q08AI8-3|MAB21L4	MSMS	HCT116MG_D190212_S4	4	590.268310546875	2	590.269478	1178.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.66	1	20.459	19.959	20.959	-0.20133								0	0	0	0.93552	1	7086	7086		13.906	0.86358	1		+		4251	13390	2249	2274	4169	4169					-0.05771759007234323
ATAYRPDWNRL	11	Unmodified	_ATAYRPDWNRL_					0	0	0		ENSG00000198832|ENST00000400299|SELENOM;ENST00000465536.5_1_22:31502146-31503491:-|nuORF;ENST00000460642.5_1_22:31502029-31503518:-|nuORF;ENST00000402395.5_1_22:31501939-31503518:-|nuORF;ENST00000491958.5_1_22:31502068-31503518:-|nuORF;ENST00000490967.5_1_22:31503065-31503518:-|nuORF	ENSG00000198832|ENST00000400299|SELENOM	ENSG00000198832|ENST00000400299|SELENOM	MSMS	HCT116MG_D190212_S2	2	454.6910705566406	3	454.901954	1361.68403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.608	1	16.266	15.766	16.766	-0.34183								0	0	0	0.95307	1	5600	5600		4.7159	1.1289	1				4252	6279	2250	2275	4170	4170					0.017657940606113698
ATCHFALGEY	10	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))HFALGEY_	ATC(1)HFALGEY		ATC(89)HFALGEY		0	1	0		ENST00000519493.1_1_8:19690706-19694700:+|nuORF;ENSG00000104613|ENST00000397977|INTS10	ENST00000519493.1_1_8:19690706-19694700:+|nuORF	ENST00000519493.1_1_8:19690706-19694700:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	584.7579956054688	2	584.758223	1167.50189	0.44305	0.00025908	-0.34151	-0.0001997	0.10154	5.9375E-05	584.7581565811616	42.839	0.26104	42.839	42.69	42.951	0					9	4	3	0	0	0	0.047641	1	16192	16192		88.954	62.07	1	14385000			4253	1941	2251	2276	4171	4171	8				-0.07515681676500208
ATCHFALGEY	10	Carbamidomethyl (C)	_ATC(Carbamidomethyl (C))HFALGEY_	ATC(1)HFALGEY		ATC(65)HFALGEY		0	1	0		ENST00000519493.1_1_8:19690706-19694700:+|nuORF;ENSG00000104613|ENST00000397977|INTS10	ENST00000519493.1_1_8:19690706-19694700:+|nuORF	ENST00000519493.1_1_8:19690706-19694700:+|nuORF	MSMS	HCT116MG_D190212_S2	2	584.75732421875	2	584.758223	1167.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.863	1	42.793	42.293	43.293	-0.069984								0	0	0	0.23995	1	16235	16235		65.235	41.445	1				4254	1941	2251	2276	4172	4172	8				-0.07515681676500208
ATCMSMIP	8	Unmodified	_ATCMSMIP_					0	0	0			REV__nc|ENSG00000148848|O43184-3|ADAM12	REV__nc|ENSG00000148848|O43184-3|ADAM12	MSMS	HCT116MG_D190212_S3	3	427.18487548828125	2	427.18446	852.354367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.648	1	34.351	33.851	34.851	-0.29707								0	0	0	0.8837	1	12761	12761		10.183	0.83596	1		+		4255	9848	2252	2277	4173	4173					-0.07771612806493522
ATCPPRWAAP	10	Unmodified	_ATCPPRWAAP_					0	0	0			REV__ENST00000249075.3_1_22:30637085-30637283:-|nuORF	REV__ENST00000249075.3_1_22:30637085-30637283:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	535.2653198242188	2	535.266019	1068.51748	0.35264	0.00018876	-1.0226	-0.00054736	-0.66995	-0.0003586	535.2653709630848	34.539	0.25936	34.242	34.077	34.336	-0.29707					7	4	2	0	0	0	0.30856	1	12738	12738		3.5965	0	1	2742300	+		4256	14581	2253	2278	4174	4174					-0.014033503688096971
ATDAHVEWSSS	11	Unmodified	_ATDAHVEWSSS_					0	0	0		ENST00000372073.5_1_X:109247367-109388033:+|nuORF	ENST00000372073.5_1_X:109247367-109388033:+|nuORF	ENST00000372073.5_1_X:109247367-109388033:+|nuORF	MSMS	HCT116MG_D190212_S4	4	595.2603759765625	2	595.259642	1188.50473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.817	1	35.431	34.931	35.931	-0.38606								0	0	0	0.95113	1	13084	13084		5.7319	0	1				4257	7453	2254	2279	4175	4175					-0.08198135017983077
ATDAPLRK	8	Unmodified	_ATDAPLRK_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MSMS	HCT116MG_D190212_S1	1	436.253662109375	2	436.253434	870.492316	0.04491	1.9592E-05	0.48022	0.0002095	0.52513	0.00022909	436.25357850247116	16.627	0.20818	16.627	16.525	16.733	0					5	3	2	0	0	0	0.21275	1	5635	5635		71.134	29.039	1	1282300			4258	1417	2255	2280	4176	4176					0.051889181002820806
ATDDSLYY	8	Unmodified	_ATDDSLYY_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MULTI-MSMS	HCT116MG_D190212_S3	3	947.4005126953125	1	947.399269	946.391992	0.70526	0.00066816	0.032257	3.056E-05	0.73752	0.00069872	947.3992875629307	39.453	0.21355	39.152	38.979	39.192	-0.30137					6	3	2	0	0	0	0.13911	1	14644	14644		86.121	45.673	1	6054000			4259	4049	2256	2281	4177	4177					-0.08334783744055585
ATDEEIYRAA	10	Unmodified	_ATDEEIYRAA_					0	0	0		tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	tr|U7SV15|U7SV15_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01476PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	569.7730712890625	2	569.772385	1137.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.535	1	32.305	31.805	32.805	-0.23009								0	0	0	0.92272	1	12041	12041		10.824	0.75	1				4260	18484	2257	2282	4178	4178					-0.03304660495564349
ATDGIGKAY	9	Unmodified	_ATDGIGKAY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-SECPEP	HCT116MG_D190212_S1	1	447.52105712890625	2	448.229625	894.444697	0.072138	3.2335E-05	-0.31053	-0.00013919	-0.23839	-0.00010685	448.2296212161498	25.679	0.20916	25.679	25.561	25.77	0					5	3	2	0	0	0	0.1195	1	9242	9242		36.506	16.053	1	2309400			4261	1877	2258	2283	4179	4179					-0.006747808905743113
ATDGIGKAY	9	Unmodified	_ATDGIGKAY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-SECPEP	HCT116MG_D190212_S2	2	447.5215148925781	2	448.229625	894.444697	0.42827	0.00019197	-0.49333	-0.00022113	-0.065061	-2.9162E-05	448.2293917475789	26.101	0.20829	25.74	25.61	25.818	-0.36164					5	3	2	0	0	0	0.20548	1	9397	9397		20.415	4.5674	1	5299900			4262	1877	2258	2283	4180	4180					-0.006747808905743113
ATDICDPNPI	10	Unmodified	_ATDICDPNPI_					0	0	0		CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;ENSG00000165164|ENST00000378653|CFAP47	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.2732543945312	2	529.744782	1057.47501	0.047414	2.5117E-05	0.29034	0.00015381	0.33776	0.00017892	530.2464818117655	43.093	0.4115	43.019	42.891	43.303	-0.073376					12	7	2	0	0	0	0.30526	1	16443	16443		6.2058	2.2614	1	16656000			4263	416	2259	2284	4181	4181					-0.05142790287709431
ATDICDPNPI	10	Unmodified	_ATDICDPNPI_					0	0	0		CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;ENSG00000165164|ENST00000378653|CFAP47	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	529.744782	1057.47501	0.26468	0.00014021	0.76809	0.00040689	1.0328	0.00054711	529.7450429195242	43.186	0.26123	43.186	43.003	43.264	0	0.092451	0.00050703	NaN	6.2058	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5564900			4264	416	2259	2284							-0.05142790287709431
ATDICDPNPI	10	Unmodified	_ATDICDPNPI_					0	0	0		CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;ENSG00000165164|ENST00000378653|CFAP47	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	529.744782	1057.47501	0.5112	0.0002708	0.026747	1.4169E-05	0.53794	0.00028497	529.7448309656662	43.38	0.57036	43.075	42.984	43.554	-0.30472	-0.018255	-0.00027842	NaN	6.2058	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13454000			4265	416	2259	2284							-0.05142790287709431
ATDIDKNGY	9	Unmodified	_ATDIDKNGY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MSMS	HCT116MG_D190212_S1	1	498.73565673828125	2	498.735271	995.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.844	1	22.844	22.344	23.344	0								0	0	0	0.019309	1	8107	8107		92.653	38.821	1				4266	3562	2260	2285	4182	4182					-0.041920035870930406
ATDIDKNGY	9	Unmodified	_ATDIDKNGY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7351989746094	2	498.735271	995.45599	0.32694	0.00016306	-0.48015	-0.00023947	-0.15321	-7.6411E-05	498.734956507956	23.294	0.41545	22.908	22.674	23.089	-0.3852					9	7	2	0	0	0	0.0094709	1	8305	8305		114.65	50.413	1	12885000			4267	3562	2260	2285	4183	4183					-0.041920035870930406
ATDIDKNGY	9	Unmodified	_ATDIDKNGY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	HCT116MG_D190212_S3	3	498.7351989746094	2	498.735271	995.45599	0.31364	0.00015642	-0.42397	-0.00021145	-0.11033	-5.5027E-05	498.7350171864719	22.807	0.24828	22.788	22.647	22.896	-0.018869					7	4	2	0	0	0	0.023938	1	8041	8041		92.491	37.718	1	4501400			4268	3562	2260	2285	4184	4184					-0.041920035870930406
ATDIKITVY	9	Unmodified	_ATDIKITVY_					0	0	0		ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2899169921875	2	512.289682	1022.56481	0.50368	0.00025803	-0.139	-7.1209E-05	0.36468	0.00018682	512.2896305659206	41.94	0.26082	41.94	41.758	42.019	0					12	4	3	0	0	0	0.02327	1	15791	15791		93.166	47.145	1	50854000			4269	2856	2261	2286	4185	4185					0.05443207383166282
ATDIKITVY	9	Unmodified	_ATDIKITVY_					0	0	0		ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	MULTI-MSMS	HCT116MG_D190212_S2	2	512.289794921875	2	512.289682	1022.56481	0.31889	0.00016336	0.060679	3.1085E-05	0.37957	0.00019445	512.2896449614733	41.903	0.51901	41.834	41.653	42.172	-0.068199					19	9	4	0	0	0	0.022505	1	15847	15847		93.938	47.917	1	101130000			4270	2856	2261	2286	4186	4186					0.05443207383166282
ATDIKITVY	9	Unmodified	_ATDIKITVY_					0	0	0		ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	MULTI-MSMS	HCT116MG_D190212_S2	2	1023.572265625	1	1023.57209	1022.56481	0.70127	0.0007178	-0.094504	-9.6732E-05	0.60677	0.00062107	1023.5718128131318	41.911	0.25963	41.843	41.705	41.964	-0.068199					6	4	2	0	0	0	0.026999	1	15881	15881		89.401	39.468	1	12064000			4271	2856	2261	2286	4187	4187					0.05443207383166282
ATDIKITVY	9	Unmodified	_ATDIKITVY_					0	0	0		ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	512.289682	1022.56481	0.21019	0.00010768	-0.078305	-4.0115E-05	0.13189	6.7565E-05	512.2898516953235	42.171	0.20758	41.868	41.728	41.935	-0.30352	-0.013105	-8.5357E-06	NaN	93.938	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2322500			4272	2856	2261	2286							0.05443207383166282
ATDILPKW	8	Unmodified	_ATDILPKW_					0	0	0		ENSG00000126602|ENST00000246957|TRAP1;nc|ENSG00000126602|Q12931-2|TRAP1;TRAP1|p.K439Vfs*3|1|0.06|ENSG00000126602|chr16:3666038-3666039|TT/-|frameshift_variant	ENSG00000126602|ENST00000246957|TRAP1	ENSG00000126602|ENST00000246957|TRAP1	MSMS	HCT116MG_D190212_S4	4	471.9382629394531	2	472.26601	942.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.273	1	35.888	35.388	36.388	-0.38558								0	0	0	0.55681	1	13268	13268		39.957	0.0076237	1				4273	2942	2262	2287	4188	4188					0.043909729028428046
ATDINGDDY	9	Unmodified	_ATDINGDDY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	HCT116MG_D190212_S1	1	983.3935546875	1	983.395246	982.38797	0.60129	0.00059131	-0.25784	-0.00025356	0.34346	0.00033775	983.3945379896442	27.874	0.26037	27.874	27.748	28.008	0					9	4	3	0	0	0	0.0058997	1	10147	10147		129.77	71.094	1	11724000			4274	3562	2263	2288	4189	4189					-0.10392873237753975
ATDINGDDY	9	Unmodified	_ATDINGDDY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	HCT116MG_D190212_S2	2	983.397216796875	1	983.395246	982.38797	0.78013	0.00076717	-0.67101	-0.00065987	0.10911	0.0001073	983.3939799423387	28.178	0.25891	27.848	27.719	27.977	-0.32987					9	4	3	0	0	0	0.00046881	1	10287	10287		195.45	132.88	1	35533000			4275	3562	2263	2288	4190	4190					-0.10392873237753975
ATDINGDDY	9	Unmodified	_ATDINGDDY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	HCT116MG_D190212_S3	3	983.3930053710938	1	983.395246	982.38797	0.69402	0.0006825	-1.1826	-0.001163	-0.48857	-0.00048046	983.3938257162129	28.201	0.41775	27.995	27.811	28.229	-0.20593					18	7	4	0	0	0	0.0094709	1	10182	10182		114.65	46.568	1	27574000			4276	3562	2263	2288	4191	4191					-0.10392873237753975
ATDINGDDY	9	Unmodified	_ATDINGDDY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	HCT116MG_D190212_S3	3	492.2012023925781	2	492.201261	982.38797	0.031101	1.5308E-05	0.15199	7.481E-05	0.18309	9.0117E-05	492.2012946768102	28.148	0.31341	27.942	27.863	28.177	-0.20593					7	5	2	0	0	0	0.32162	1	10208	10208		28.487	3.0875	1	6114000			4277	3562	2263	2288	4192	4192					-0.10392873237753975
ATDISRQNEY	10	Unmodified	_ATDISRQNEY_					0	0	0		nc|ENSG00000205268|Q13946-3|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A;ENSG00000205268|ENST00000401827|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	MSMS	HCT116MG_D190212_S1	1	598.7809448242188	2	598.780741	1195.54693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.084	1	23.084	22.584	23.584	0								0	0	0	0.03817	1	8204	8204		114.5	56.775	1				4278	6375	2264	2289	4193	4193					-0.043021596096195935
ATDISRQNEY	10	Unmodified	_ATDISRQNEY_					0	0	0		nc|ENSG00000205268|Q13946-3|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A;ENSG00000205268|ENST00000401827|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	MULTI-MSMS	HCT116MG_D190212_S2	2	598.7810668945312	2	598.780741	1195.54693	0.60923	0.0003648	-0.12985	-7.7752E-05	0.47938	0.00028704	598.7806772941849	23.5	0.20734	23.117	22.988	23.195	-0.38324					6	3	2	0	0	0	1.247E-10	1	8385	8385		218.93	158.86	1	38329000			4279	6375	2264	2289	4194	4194					-0.043021596096195935
ATDISRQNEY	10	Unmodified	_ATDISRQNEY_					0	0	0		nc|ENSG00000205268|Q13946-3|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A;ENSG00000205268|ENST00000401827|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	MULTI-MSMS	HCT116MG_D190212_S3	3	598.7803955078125	2	598.780741	1195.54693	0.52057	0.00031171	-0.47396	-0.0002838	0.046607	2.7907E-05	598.7803318501234	23.064	0.3644	23.024	22.875	23.239	-0.03968					14	6	3	0	0	0	0.0052575	1	8141	8141		166.77	124.81	1	9960200			4280	6375	2264	2289	4195	4195					-0.043021596096195935
ATDISRQNEY	10	Unmodified	_ATDISRQNEY_					0	0	0		nc|ENSG00000205268|Q13946-3|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A;ENSG00000205268|ENST00000401827|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	nc|ENSG00000205268|Q13946-3|PDE7A	MULTI-MATCH	HCT116MG_D190212_S4	4		2	598.780741	1195.54693	0.99287	0.00059451	-1.1059	-0.00066217	-0.113	-6.7664E-05	599.2813855571846	23.337	0.1573	23.09	22.958	23.116	-0.24775	0.012662	-0.0010912	NaN	218.93	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3983500			4281	6375	2264	2289							-0.043021596096195935
ATDLAYYLV	9	Unmodified	_ATDLAYYLV_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	HCT116MG_D190212_S2	2	1028.53076171875	1	1028.52989	1027.52261	0.52449	0.00053946	0.025665	2.6398E-05	0.55016	0.00056585	1028.5300274024576	56.68	0.16022	56.498	56.418	56.578	-0.18261					4	2	2	0	0	0	0.065014	1	21899	21899		67.344	16.489	1	12960000			4282	2940	2265	2290	4196	4196					0.009952319747981164
ATDLAYYLV	9	Unmodified	_ATDLAYYLV_					0	0	0		nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	nc|ENSG00000126522|P04424-3|ASL	nc|ENSG00000126522|P04424-3|ASL	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1028.52989	1027.52261	0.73451	0.00075547	0.084566	8.6979E-05	0.81908	0.00084245	1028.5298107297085	56.813	0.15665	56.533	56.415	56.572	-0.28024	0.01759	4.0026E-05	NaN	67.344	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	698510			4283	2940	2265	2290							0.009952319747981164
ATDLHLMD	8	Unmodified	_ATDLHLMD_					0	0	0			REV__EVC|p.L221M|1|0.25|ENSG00000072840|chr4:5733394-5733394|C/A|missense_variant	REV__EVC|p.L221M|1|0.25|ENSG00000072840|chr4:5733394-5733394|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	458.21417236328125	2	458.21566	914.416767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.291	1	39.989	39.489	40.489	-0.30161								0	0	0	0.70483	1	14952	14952		30.225	5.5509	1		+		4284	16799	2266	2291	4197	4197					-0.04386427142310367
ATDLIELMC	9	Carbamidomethyl (C),Oxidation (M)	_ATDLIELM(Oxidation (M))C(Carbamidomethyl (C))_	ATDLIELMC(1)	ATDLIELM(1)C	ATDLIELMC(85)	ATDLIELM(85)C	0	1	1			REV__nc|ENSG00000127314|P61224-2|RAP1B	REV__nc|ENSG00000127314|P61224-2|RAP1B	MULTI-MSMS	HCT116MG_D190212_S2	2	541.248779296875	2	541.248843	1080.48313	0.51825	0.0002805	0.16241	8.7906E-05	0.68066	0.00036841	541.2489126854516	23.708	0.36466	23.325	23.143	23.508	-0.38324					10	6	2	0	0	0	0.031005	1	8471	8471		85.357	7.2073	1	24546000	+		4285	11584	2267	2292	4198	4198	52	153			-0.05388979362578539
ATDLIELMC	9	Carbamidomethyl (C),Oxidation (M)	_ATDLIELM(Oxidation (M))C(Carbamidomethyl (C))_					0	1	1			REV__nc|ENSG00000127314|P61224-2|RAP1B	REV__nc|ENSG00000127314|P61224-2|RAP1B	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	541.248843	1080.48313	0.46791	0.00025325	0.63718	0.00034487	1.1051	0.00059813	541.2488999253443	23.236	0.20855	23.236	23.158	23.366	0	-0.054647	0.00025703	NaN	85.357	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7414400	+		4286	11584	2267	2292			52	153			-0.05388979362578539
ATDLIELMC	9	Carbamidomethyl (C),Oxidation (M)	_ATDLIELM(Oxidation (M))C(Carbamidomethyl (C))_					0	1	1			REV__nc|ENSG00000127314|P61224-2|RAP1B	REV__nc|ENSG00000127314|P61224-2|RAP1B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	541.248843	1080.48313	0.51825	0.0002805	0.16241	8.7906E-05	0.68066	0.00036841	541.2489126854516	23.708	0.36466	23.325	23.143	23.508	-0.38324	0.034488	-0.00025691	NaN	85.357	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24546000	+		4287	11584	2267	2292			52	153			-0.05388979362578539
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	HCT116MG_D190212_S1	1	534.2724609375	2	534.272021	1066.52949	0.43301	0.00023135	0.28086	0.00015005	0.71387	0.0003814	534.2721304700112	33.569	0.36315	33.569	33.4	33.763	0					12	6	3	0	0	0	0.0041644	1	12438	12438		148.27	98.335	1	18676000			4288	950	2268	2293	4199	4199					-0.0011145514461077255
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	HCT116MG_D190212_S2	2	534.271728515625	2	534.272021	1066.52949	0.59671	0.00031881	0.074381	3.974E-05	0.67109	0.00035855	534.2720558167829	33.753	0.31211	33.56	33.43	33.742	-0.19297					13	5	3	0	0	0	0.016412	1	12540	12540		100.09	57.996	1	77154000			4289	950	2268	2293	4200	4200					-0.0011145514461077255
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2728271484375	2	534.272021	1066.52949	0.49372	0.00026378	1.7147	0.00091614	2.2085	0.0011799	534.2730773296197	33.95	0.41578	33.656	33.404	33.819	-0.2942					15	7	3	0	0	0	0.016412	2	12494	12491;12494		100.09	54.07	1	6794800			4290	950	2268	2293	4201;4202	4202					-0.0011145514461077255
ATDMPVKNQY	10	Unmodified	_ATDMPVKNQY_					0	0	0		ENST00000597440.5_1_19:7913809-7917719:+|nuORF;EVI5L|p.K693Rfs*7|1|0.22|ENSG00000142459|chr19:7863251-7863251|A/-|frameshift_variant;nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	583.7792358398438	2	583.779156	1165.54376	0.52511	0.00030655	-0.13704	-7.9998E-05	0.38807	0.00022655	583.7790608071256	26.996	0.25998	26.996	26.813	27.073	0					8	4	2	0	0	0	0.0015699	1	9782	9782		176.43	130.69	1	22892000			4291	3757	2269	2294	4203	4203					-0.032391259879887
ATDMPVKNQY	10	Unmodified	_ATDMPVKNQY_					0	0	0		ENST00000597440.5_1_19:7913809-7917719:+|nuORF;EVI5L|p.K693Rfs*7|1|0.22|ENSG00000142459|chr19:7863251-7863251|A/-|frameshift_variant;nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	583.77978515625	2	583.779156	1165.54376	0.78342	0.00045734	0.069698	4.0688E-05	0.85312	0.00049803	583.7790882290549	27.353	0.41407	27	26.818	27.232	-0.35254					17	7	3	0	0	0	1.7489E-24	1	9934	9934		258.17	187.83	1	105280000			4292	3757	2269	2294	4204	4204					-0.032391259879887
ATDMPVKNQY	10	Unmodified	_ATDMPVKNQY_					0	0	0		ENST00000597440.5_1_19:7913809-7917719:+|nuORF;EVI5L|p.K693Rfs*7|1|0.22|ENSG00000142459|chr19:7863251-7863251|A/-|frameshift_variant;nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	584.2807006835938	2	583.779156	1165.54376	0.48753	0.00028461	0.18579	0.00010846	0.67332	0.00039307	583.7792615966816	27.263	0.36444	27.094	26.912	27.276	-0.16933					10	6	2	0	0	0	6.9231E-07	1	9814	9814		211.85	150.25	1	35712000			4293	3757	2269	2294	4205	4205					-0.032391259879887
ATDMPVKNQY	10	Unmodified	_ATDMPVKNQY_					0	0	0		ENST00000597440.5_1_19:7913809-7917719:+|nuORF;EVI5L|p.K693Rfs*7|1|0.22|ENSG00000142459|chr19:7863251-7863251|A/-|frameshift_variant;nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	583.7791137695312	2	583.779156	1165.54376	0.397	0.00023176	-0.19496	-0.00011381	0.20204	0.00011795	583.7791356244494	27.408	0.31152	27.093	26.947	27.259	-0.31464					11	5	3	0	0	0	0.01069	1	9820	9820		145.13	116.05	1	6495600			4294	3757	2269	2294	4206	4206					-0.032391259879887
ATDMPVKNQY	10	Oxidation (M)	_ATDM(Oxidation (M))PVKNQY_		ATDM(1)PVKNQY		ATDM(42)PVKNQY	0	0	1		ENST00000597440.5_1_19:7913809-7917719:+|nuORF;EVI5L|p.K693Rfs*7|1|0.22|ENSG00000142459|chr19:7863251-7863251|A/-|frameshift_variant;nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	ENST00000597440.5_1_19:7913809-7917719:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	592.2783813476562	2	591.776613	1181.53867	0.42869	0.00025369	0.27326	0.00016171	0.70195	0.0004154	591.7765096917265	21.032	0.36424	21.066	20.818	21.183	0.034473					11	6	2	0	0	0	0.40515	1	7294	7294		41.84	27.934	1	2661700			4295	3757	2269	2295	4207	4207		85			-0.04483429850597531
ATDPDDTHAY	10	Unmodified	_ATDPDDTHAY_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-MSMS	HCT116MG_D190212_S1	1	553.2256469726562	2	553.225268	1104.43598	0.51967	0.00028749	-0.47569	-0.00026316	0.043978	2.433E-05	553.2254673100393	21.354	0.31763	21.354	21.12	21.437	0					11	5	3	0	0	0	0.060393	1	7511	7511		81.89	45.846	1	9719400			4296	511	2270	2296	4208	4208					-0.11205799317713172
ATDPDDTHAY	10	Unmodified	_ATDPDDTHAY_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2255859375	2	553.225268	1104.43598	0.22974	0.0001271	0.135	7.4688E-05	0.36474	0.00020178	553.2253826230468	21.729	0.31153	21.344	21.167	21.479	-0.38503					13	5	4	0	0	0	0.20843	1	7686	7686		58.679	30.192	1	55197000			4297	511	2270	2296	4209	4209					-0.11205799317713172
ATDPDDTHAY	10	Unmodified	_ATDPDDTHAY_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2251586914062	2	553.225268	1104.43598	0.30985	0.00017142	0.176	9.7367E-05	0.48585	0.00026878	553.225267458128	21.278	0.4727	21.297	21.063	21.535	0.018446					14	8	3	0	0	0	0.02258	1	7410	7410		115.69	79.565	1	26275000			4298	511	2270	2296	4210	4210					-0.11205799317713172
ATDPDDTHAY	10	Unmodified	_ATDPDDTHAY_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;COL12A1|p.G3027Wfs*19|1|0.1|ENSG00000111799|chr6:75087680-75087681|-/G|frameshift_variant;ENSG00000111799|ENST00000322507|COL12A1;COL12A1|p.L2085Hfs*4|1|0.22|ENSG00000111799|chr6:75128382-75128383|-/T|frameshift_variant;COL12A1|p.F2273Lfs*20|1|0.26|ENSG00000111799|chr6:75124000-75124000|A/-|frameshift_variant;COL12A1|p.P2307Lfs*21|1|0.25|ENSG00000111799|chr6:75123356-75123356|G/-|frameshift_variant;COL12A1|p.G2777Wfs*37|1|0.15|ENSG00000111799|chr6:75102684-75102685|-/G|frameshift_variant	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2250366210938	2	553.225268	1104.43598	0.48074	0.00026596	0.16039	8.8734E-05	0.64113	0.00035469	553.22518226235	21.515	0.36324	21.296	21.166	21.529	-0.21832					11	6	3	0	0	0	0.095673	1	7441	7441		74.929	51.781	1	4231600			4299	511	2270	2296	4211	4211					-0.11205799317713172
ATDPKAIGH	9	Unmodified	_ATDPKAIGH_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B;ENST00000496131.1_1_1:44442124-44442513:+|nuORF	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	HCT116MG_D190212_S1	1	455.2431335449219	2	455.243067	908.47158	0.1013	4.6118E-05	0.15531	7.0705E-05	0.25662	0.00011682	455.2430556347514	16.603	0.26022	16.603	16.525	16.785	0					9	4	3	0	0	0	0.012596	1	5622	5622		106.94	64.846	1	5462300			4300	2576	2271	2297	4212	4212					0.013683277206041566
ATDPKAIGH	9	Unmodified	_ATDPKAIGH_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B;ENST00000496131.1_1_1:44442124-44442513:+|nuORF	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MSMS	HCT116MG_D190212_S2	2	455.2431640625	2	455.243067	908.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.048	1	16.699	16.199	17.199	-0.34933								0	0	0	0.0046152	1	5777	5777		118.07	75.974	1				4301	2576	2271	2297	4213	4213					0.013683277206041566
ATDPTIHTV	9	Unmodified	_ATDPTIHTV_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MSMS	HCT116MG_D190212_S1	1	477.7482604980469	2	477.748182	953.481811	0.2746	0.00013119	-0.045569	-2.177E-05	0.22903	0.00010942	477.74797513168363	27.982	0.26042	27.982	27.852	28.113	0					7	4	2	0	0	0	0.035914	1	10201	10201		81.613	37.206	1	12054000			4302	1476	2272	2298	4214	4214					0.0032089065518903226
ATDPTIHTV	9	Unmodified	_ATDPTIHTV_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MSMS	HCT116MG_D190212_S2	2	477.748291015625	2	477.748182	953.481811	0.21481	0.00010262	-0.079547	-3.8004E-05	0.13526	6.4621E-05	477.7481584644403	28.437	0.20689	28.107	27.977	28.184	-0.32987					6	3	2	0	0	0	0.016134	1	10397	10397		100.37	58.277	1	21814000			4303	1476	2272	2298	4215	4215					0.0032089065518903226
ATDPVTGDLY	10	Unmodified	_ATDPVTGDLY_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF;TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant;TENM3|p.Y2250Mfs*4|1|0.24|ENSG00000218336|chr4:182793414-182793414|T/-|frameshift_variant	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MSMS	HCT116MG_D190212_S3	3	526.2511596679688	2	526.250754	1050.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.731	1	41.429	40.929	41.929	-0.30257								0	0	0	0.13638	1	15525	15525		74.929	36.955	1				4304	6459	2273	2299	4216	4216					-0.03626850272848969
ATDRFRSLY	9	Unmodified	_ATDRFRSLY_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-10|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	564.7938842773438	2	564.793455	1127.57236	0.70139	0.00039614	-0.24974	-0.00014105	0.45165	0.00025509	564.7933723813277	34.583	0.20552	34.424	34.296	34.502	-0.15834					8	3	3	0	0	0	0.14362	1	12902	12902		49.554	26.818	1	27564000			4305	735	2274	2300	4217	4217					0.0136735970349946
ATDRFRSLY	9	Unmodified	_ATDRFRSLY_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-10|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	564.793455	1127.57236	0.24093	0.00013608	0.56927	0.00032152	0.8102	0.00045759	564.7935944516103	34.842	0.15611	34.545	34.44	34.596	-0.29707	0.060401	0.00025723	NaN	49.554	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4119300			4306	735	2274	2300							0.0136735970349946
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000539304.1_1_12:7344181-7354515:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	HCT116MG_D190212_S1	1	609.7567138671875	2	609.756735	1217.49892	0.18653	0.00011374	-0.19427	-0.00011846	-0.0077411	-4.7202E-06	609.7565122087127	40.768	0.20565	40.768	40.64	40.846	0					6	3	2	0	0	0	0.25384	1	15339	15339		35.612	23.372	1	24844000			4307	3609	2275	2301	4218	4218					-0.10113233529659738
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000539304.1_1_12:7344181-7354515:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	HCT116MG_D190212_S2	2	609.7562255859375	2	609.756735	1217.49892	0.73855	0.00045034	-0.35763	-0.00021807	0.38092	0.00023227	609.7565251525679	40.717	0.46503	40.647	40.468	40.933	-0.069626					20	8	4	0	0	0	0.0035631	1	15360	15360		173.69	123.75	1	190390000			4308	3609	2275	2301	4219	4219					-0.10113233529659738
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000539304.1_1_12:7344181-7354515:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-SECPEP	HCT116MG_D190212_S2	2	1218.5069580078125	1	1218.50619	1217.49892	0.71465	0.00087081	-0.5903	-0.00071929	0.12435	0.00015152	1218.5055020884654	40.689	0.20557	40.62	40.519	40.725	-0.069626					5	3	2	0	0	0	0.00010305	1	15382	15382		140.63	102.02	1	11260000			4309	3609	2275	2301	4220	4220					-0.10113233529659738
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000539304.1_1_12:7344181-7354515:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	HCT116MG_D190212_S3	3	609.7572631835938	2	609.756735	1217.49892	0.62782	0.00038282	-0.076287	-4.6517E-05	0.55153	0.0003363	609.7566716255739	41.013	0.36512	40.711	40.527	40.893	-0.30185					17	6	4	0	0	0	0.0059958	1	15232	15232		128.93	99.851	1	33640000			4310	3609	2275	2301	4221	4221					-0.10113233529659738
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000539304.1_1_12:7344181-7354515:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	HCT116MG_D190212_S4	4	610.2586669921875	2	609.756735	1217.49892	0.9256	0.00056439	-0.41224	-0.00025137	0.51336	0.00031303	609.7564425465365	41.159	0.22253	40.781	40.625	40.848	-0.37732					7	4	2	0	0	0	0.25384	1	15135	15135		35.612	21.207	1	8564800			4311	3609	2275	2301	4222	4222					-0.10113233529659738
ATDRYVRT	8	Unmodified	_ATDRYVRT_					0	0	0			REV__ENST00000419722.6_1_22:23634729-23652357:+|nuORF	REV__ENST00000419722.6_1_22:23634729-23652357:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.7331848144531	2	491.259248	980.503943	0.2829	0.00013898	-1.1404	-0.00056024	-0.85751	-0.00042126	491.25854797728744	20.759	0.41805	20.379	20.236	20.654	-0.37949					10	7	2	0	0	0	0.26171	1	7325	7325		36.127	15.712	1	11542000	+		4312	13896	2276	2302	4223	4223					0.012911151236153273
ATDSYKVTHY	10	Unmodified	_ATDSYKVTHY_					0	0	0		ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	592.7830200195312	2	592.782753	1183.55095	0.62665	0.00037147	0.16819	9.9703E-05	0.79485	0.00047117	592.7826572981568	23.81	0.26157	23.81	23.679	23.941	0					13	4	4	0	0	0	0.0033534	1	8498	8498		208.35	168.4	1	38030000			4313	2039	2277	2303	4224	4224					-0.03348070115907831
ATDSYKVTHY	10	Unmodified	_ATDSYKVTHY_					0	0	0		ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	395.5243225097656	3	395.524261	1183.55095	-0.091251	-3.6092E-05	0.12275	4.8552E-05	0.031502	1.246E-05	395.52430590098487	23.81	0.26157	23.81	23.679	23.941	0					7	4	2	0	0	0	0.12694	1	8503	8503		68.76	51.711	1	17545000			4314	2039	2277	2303	4225	4225					-0.03348070115907831
ATDSYKVTHY	10	Unmodified	_ATDSYKVTHY_					0	0	0		ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	592.7833251953125	2	592.782753	1183.55095	0.79636	0.00047207	-0.20431	-0.00012111	0.59205	0.00035096	592.7826166364838	24.333	0.26053	23.953	23.822	24.082	-0.38003					14	4	4	0	0	0	0.0033534	1	8724	8724		208.35	164.58	1	107900000			4315	2039	2277	2303	4226	4226					-0.03348070115907831
ATDSYKVTHY	10	Unmodified	_ATDSYKVTHY_					0	0	0		ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	395.5242919921875	3	395.524261	1183.55095	0.20562	8.1326E-05	-0.31249	-0.0001236	-0.10687	-4.2271E-05	395.524149774328	24.338	0.31278	23.958	23.822	24.135	-0.38003					10	5	3	0	0	0	0.065434	1	8733	8733		80.896	59.096	1	32164000			4316	2039	2277	2303	4227	4227					-0.03348070115907831
ATDTETGSAY	10	Unmodified	_ATDTETGSAY_					0	0	0		ENSG00000173846|ENST00000372201|PLK3;PLK3|p.N338Tfs*35|2|0.36|ENSG00000173846|chr1:44803325-44803325|C/-|frameshift_variant;ENST00000465443.5_1_1:45266117-45270174:+|nuORF;PLK3|p.L455Wfs*90|1|0.24|ENSG00000173846|chr1:44804354-44804354|C/-|frameshift_variant	ENSG00000173846|ENST00000372201|PLK3	ENSG00000173846|ENST00000372201|PLK3	MULTI-MSMS	HCT116MG_D190212_S3	3	1015.4215698242188	1	1015.42146	1014.41418	0.61039	0.00061981	-0.22315	-0.00022659	0.38724	0.00039322	1015.4215081784128	21.911	0.31236	21.912	21.781	22.094	0.00074577					8	5	2	0	0	0	0.032253	1	7694	7694		100.37	65.97	1	2080400			4317	5307	2278	2304	4228	4228					-0.09244604066282136
ATDVAKGMHY	10	Unmodified	_ATDVAKGMHY_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20;nc|ENSG00000091436|Q9NYL2-3|MAP3K20;ENST00000476618.5_1_2:173940647-174074648:+|nuORF;nc|ENSG00000091436|Q9NYL2-2|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MSMS	HCT116MG_D190212_S1	1	546.7610473632812	2	546.760766	1091.50698	0.58454	0.0003196	-3.3178	-0.001814	-2.7332	-0.0014944	546.7608592769394	25.822	0.31369	25.822	25.666	25.98	0					12	5	4	0	0	0	0.15126	1	9360	9360		63.961	37.692	1	4454100			4318	1560	2279	2305	4229	4229					-0.03511377813879335
ATDVAKGMHY	10	Unmodified	_ATDVAKGMHY_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20;nc|ENSG00000091436|Q9NYL2-3|MAP3K20;ENST00000476618.5_1_2:173940647-174074648:+|nuORF;nc|ENSG00000091436|Q9NYL2-2|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MSMS	HCT116MG_D190212_S2	2	364.843017578125	3	364.842936	1091.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.346	1	25.985	25.485	26.485	-0.36164								0	0	0	0.84701	1	9528	9528		19.626	0.90473	1				4319	1560	2279	2305	4230	4230					-0.03511377813879335
ATDVVTSHI	9	Unmodified	_ATDVVTSHI_					0	0	0			REV__nc|ENSG00000205176|Q8IX06|REXO1L1P	REV__nc|ENSG00000205176|Q8IX06|REXO1L1P	MULTI-MSMS	HCT116MG_D190212_S2	2	472.756103515625	2	471.748182	941.481811	0.18255	8.6119E-05	-0.16886	-7.9659E-05	0.013692	6.4593E-06	471.74803641424086	33.982	0.31089	33.807	33.657	33.967	-0.17512					11	5	3	0	0	0	0.21251	1	12589	12589		39.957	13.074	1	35846000	+		4320	17271	2280	2306	4231	4231					0.00872890655205083
ATDWGDTQAY	10	Unmodified	_ATDWGDTQAY_					0	0	0		NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2359008789062	2	564.235635	1126.45672	0.34614	0.00019531	-0.23312	-0.00013154	0.11302	6.3772E-05	564.2355313632779	38.313	0.47239	38.22	38.063	38.536	-0.09301					12	8	3	0	0	0	0.16489	1	14401	14401		62.573	38.552	1	30443000			4321	4071	2281	2307	4232	4232					-0.1014520893804729
ATDWGDTQAY	10	Unmodified	_ATDWGDTQAY_					0	0	0		NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	564.23583984375	2	564.235635	1126.45672	0.31956	0.00018031	0.2021	0.00011403	0.52167	0.00029434	564.2356585263055	38.478	0.41565	38.177	37.989	38.404	-0.30137					20	7	3	0	0	0	0.052106	2	14257	14257;14329		85.642	41.869	1	35447000			4322	4071	2281	2307	4233;4234	4233					-0.1014520893804729
ATDWGDTQAY	10	Unmodified	_ATDWGDTQAY_					0	0	0		NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1127.4642333984375	1	1127.46399	1126.45672	0.30835	0.00034766	-0.35194	-0.0003968	-0.043588	-4.9144E-05	1127.4636756936413	38.508	0.36397	38.207	38.04	38.404	-0.30137					14	6	3	0	0	0	0.037995	1	14262	14262		96.111	44.481	1	13620000			4323	4071	2281	2307	4235	4235					-0.1014520893804729
ATDWGDTQAY	10	Unmodified	_ATDWGDTQAY_					0	0	0		NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	564.2355346679688	2	564.235635	1126.45672	0.19307	0.00010894	-0.026336	-1.486E-05	0.16673	9.4077E-05	564.2355119953794	38.594	0.29131	38.213	38.096	38.388	-0.38163					12	5	3	0	0	0	0.15126	1	14171	14171		63.961	34.879	1	6196400			4324	4071	2281	2307	4236	4236					-0.1014520893804729
ATDWGDTQAY	10	Unmodified	_ATDWGDTQAY_					0	0	0		NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1127.4635009765625	1	1127.46399	1126.45672	0.37711	0.00042518	0.073368	8.2719E-05	0.45048	0.00050789	1127.4640563018065	38.628	0.19338	38.247	38.142	38.336	-0.38163					5	3	2	0	0	0	0.35357	1	14182	14182		45.7	9.1934	1	2271200			4325	4071	2281	2307	4237	4237					-0.1014520893804729
ATDWGDTQAY	10	Unmodified	_ATDWGDTQAY_					0	0	0		NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	NUDT22|p.G106C|1|0.5|ENSG00000149761|chr11:64226968-64226968|G/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	564.235635	1126.45672	-0.52092	-0.00029392	0.35197	0.00019859	-0.16896	-9.5332E-05	564.2360236882326	38.253	0.26055	38.253	38.071	38.332	0	0.037638	0.00028896	NaN	85.642	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9291000			4326	4071	2281	2307							-0.1014520893804729
ATDYHFHFY	9	Unmodified	_ATDYHFHFY_					0	0	0		nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	MULTI-MSMS	HCT116MG_D190212_S1	1	600.75927734375	2	600.759081	1199.50361	0.38503	0.00023131	0.45948	0.00027604	0.84451	0.00050735	600.7591230816703	44.384	0.266	44.384	44.25	44.516	0					9	4	3	0	0	0	0.0034366	1	16814	16814		179.23	146.92	1	22595000			4327	2870	2282	2308	4238	4238					-0.08816304596234659
ATDYHFHFY	9	Unmodified	_ATDYHFHFY_					0	0	0		nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	MSMS	HCT116MG_D190212_S2	2	600.7587280273438	2	600.759081	1199.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.394	1	44.309	43.809	44.809	-0.084797								0	0	0	8.7462E-13	1	16858	16858		179.23	131.48	1				4328	2870	2282	2308	4239	4239					-0.08816304596234659
ATDYHFHFY	9	Unmodified	_ATDYHFHFY_					0	0	0		nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	MSMS	HCT116MG_D190212_S2	2	400.8418273925781	3	400.841813	1199.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.445	1	44.36	43.86	44.86	-0.084797								0	0	0	0.20613	1	16879	16879		34.402	20.883	1				4329	2870	2282	2308	4240	4240					-0.08816304596234659
ATDYHFHFY	9	Unmodified	_ATDYHFHFY_					0	0	0		nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	600.759081	1199.50361	0.84324	0.00050659	-0.31815	-0.00019113	0.52509	0.00031545	601.2601646764764	44.62	0.10045	44.313	44.227	44.327	-0.30759	-0.035427	-0.00065005	NaN	179.23	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5430700			4330	2870	2282	2308							-0.08816304596234659
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	HCT116MG_D190212_S1	1	562.2804565429688	2	562.28018	1122.54581	0.43349	0.00024374	-0.038978	-2.1916E-05	0.39451	0.00022183	562.280068517472	29.641	0.364	29.641	29.477	29.841	0					17	6	4	0	0	0	0.0024989	1	10831	10831		223.06	144.91	1	92574000			4331	1317	2283	2309	4241	4241					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	HCT116MG_D190212_S1	1	375.5229797363281	3	375.189212	1122.54581	-0.070145	-2.6318E-05	-0.097001	-3.6394E-05	-0.16715	-6.2711E-05	375.18917594110957	29.607	0.364	29.607	29.477	29.841	0					11	6	2	0	0	0	0.082877	1	10847	10847		61.602	8.1979	1	53413000			4332	1317	2283	2309	4242	4242					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	HCT116MG_D190212_S2	2	562.2805786132812	2	562.28018	1122.54581	0.17495	9.8371E-05	0.23165	0.00013025	0.4066	0.00022862	562.2802362251654	30.024	0.30969	29.739	29.564	29.873	-0.28453					13	5	3	0	0	0	0.0035417	1	11010	11010		206.75	128.6	1	173030000			4333	1317	2283	2309	4243	4243					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	HCT116MG_D190212_S2	2	375.18896484375	3	375.189212	1122.54581	-0.43548	-0.00016339	0.034925	1.3103E-05	-0.40056	-0.00015029	375.18918794786146	29.986	0.25804	29.702	29.564	29.822	-0.28453					10	4	3	0	0	0	0.082877	1	11012	11012		61.602	8.1979	1	69152000			4334	1317	2283	2309	4244	4244					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	HCT116MG_D190212_S2	2	1123.552001953125	1	1123.55308	1122.54581	0.31967	0.00035917	-0.21514	-0.00024172	0.10454	0.00011745	1123.5525911691893	30.01	0.15461	29.726	29.615	29.77	-0.28453					4	2	2	0	0	0	0.0064513	1	11033	11033		149.91	78.78	1	14188000			4335	1317	2283	2309	4245	4245					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	HCT116MG_D190212_S3	3	562.2802734375	2	562.28018	1122.54581	0.49934	0.00028077	-0.19486	-0.00010956	0.30448	0.0001712	562.2799878417507	30.105	0.21112	29.855	29.702	29.913	-0.24946					5	3	2	0	0	0	0.12465	1	10977	10977		57.722	24.936	1	5760400			4336	1317	2283	2309	4246	4246					-0.010563291878725067
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	612.7802734375	2	612.78021	1223.54587	0.60216	0.00036899	0.051579	3.1607E-05	0.65373	0.0004006	612.7802253299875	37.163	0.8212	37.163	36.886	37.707	0					46	15	6	0	0	0	4.4552E-34	1	13834	13834		284.66	140.75	1	1216200000			4337	3640	2284	2310	4247	4247					-0.056963739785032885
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1224.5548095703125	1	1224.55314	1223.54587	0.75962	0.00093019	0.3012	0.00036883	1.0608	0.001299	1224.5529582697322	37.196	0.31102	37.196	36.938	37.249	0					11	5	3	0	0	0	1.5235E-24	1	13867	13867		260.19	116.28	1	28125000			4338	3640	2284	2310	4248	4248					-0.056963739785032885
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	612.7803344726562	2	612.78021	1223.54587	0.34861	0.00021362	0.10125	6.2047E-05	0.44986	0.00027567	612.7803385320003	37.155	0.82062	37.052	36.768	37.589	-0.10318					53	15	6	0	0	0	4.4552E-34	2	13879	13879;13973		284.66	140.75	1	3107699999.9999995			4339	3640	2284	2310	4249;4250	4249					-0.056963739785032885
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1224.5538330078125	1	1224.55314	1223.54587	0.43134	0.0005282	0.17267	0.00021144	0.60401	0.00073964	1224.5534136204415	37.186	0.41285	37.083	36.871	37.284	-0.10318					23	7	4	0	0	0	1.5235E-24	1	13900	13900		260.19	116.28	1	177020000			4340	3640	2284	2310	4251	4251					-0.056963739785032885
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	612.7801513671875	2	612.78021	1223.54587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.763	1	37.66	37.16	38.16	-0.10318								0	0	0	0.051923	1	14166	14166		97.741	42.506	1				4341	3640	2284	2310	4252	4252					-0.056963739785032885
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	612.7797241210938	2	612.78021	1223.54587	0.49766	0.00030496	-0.0067953	-4.1641E-06	0.49086	0.00030079	612.7801726552086	37.409	0.4159	37.107	36.821	37.237	-0.30137					24	7	5	0	0	0	9.795E-18	1	13830	13830		253.32	120.94	1	123550000			4342	3640	2284	2310	4253	4253					-0.056963739785032885
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	612.7802124023438	2	612.78021	1223.54587	0.64073	0.00039263	-0.1892	-0.00011594	0.45153	0.00027669	612.7802597271234	37.541	0.20617	37.157	36.977	37.183	-0.3839					6	3	2	0	0	0	0.0081677	1	13787	13787		159.1	59.01	1	8584100			4343	3640	2284	2310	4254	4254					-0.056963739785032885
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1224.55314	1223.54587	0.71704	0.00087806	-0.10357	-0.00012682	0.61348	0.00075124	1224.5525872151043	37.43	0.20807	37.129	36.977	37.185	-0.30137	-0.0070895	-0.00029886	NaN	260.19	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3307800			4344	3640	2284	2310							-0.056963739785032885
ATEERPLP	8	Unmodified	_ATEERPLP_					0	0	0		ENST00000265052.9_1_3:127409300-127409504:-|nuORF	ENST00000265052.9_1_3:127409300-127409504:-|nuORF	ENST00000265052.9_1_3:127409300-127409504:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	456.7427978515625	2	456.742899	911.471246	0.13933	6.3636E-05	0.098214	4.4858E-05	0.23754	0.00010849	456.7428980385164	24.822	1.1494	24.822	24.412	25.561	0					31	21	2	0	0	0	0.28659	1	8810	8810		60.39	1.7107	1	7749500			4345	6899	2285	2311	4255	4255					0.01196908000770236
ATEERPLP	8	Unmodified	_ATEERPLP_					0	0	0		ENST00000265052.9_1_3:127409300-127409504:-|nuORF	ENST00000265052.9_1_3:127409300-127409504:-|nuORF	ENST00000265052.9_1_3:127409300-127409504:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	456.7431640625	2	456.742899	911.471246	0.37022	0.0001691	-0.016713	-7.6335E-06	0.35351	0.00016146	456.74278876346483	24.872	1.6138	24.788	24.185	25.799	-0.083694					81	30	3	0	0	0	0.48901	1	9182	9182		42.095	3.9434	1	37990000			4346	6899	2285	2311	4256	4256					0.01196908000770236
ATEERPLP	8	Unmodified	_ATEERPLP_					0	0	0		ENST00000265052.9_1_3:127409300-127409504:-|nuORF	ENST00000265052.9_1_3:127409300-127409504:-|nuORF	ENST00000265052.9_1_3:127409300-127409504:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	456.7430419921875	2	456.742899	911.471246	0.36173	0.00016522	0.017906	8.1783E-06	0.37964	0.0001734	456.74277640113314	25.026	1.4039	24.746	24.383	25.787	-0.27958					57	26	3	0	0	0	0.48901	1	9169	9169		42.095	4.1206	1	12562000			4347	6899	2285	2311	4257	4257					0.01196908000770236
ATEESDLAQQY	11	Unmodified	_ATEESDLAQQY_					0	0	0		ENSG00000185624|ENST00000331483|P4HB;P4HB|p.N387Tfs*118|1|0.25|ENSG00000185624|chr17:81845888-81845888|T/-|frameshift_variant;ENST00000576380.5_1_17:79813102-79817234:-|nuORF;ENST00000466567.2_1_17:79817024-79818356:-|nuORF	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	HCT116MG_D190212_S2	2	627.7774047851562	2	627.777864	1253.54118	0.79521	0.00049921	-0.78032	-0.00048987	0.014889	9.347E-06	627.7772590036423	33.133	0.31242	32.921	32.792	33.104	-0.21135					7	5	2	0	0	0	0.70073	1	12319	12319		21.537	7.6309	1	21135000			4348	5837	2286	2312	4258	4258					-0.07545302911944418
ATEESDLAQQY	11	Unmodified	_ATEESDLAQQY_					0	0	0		ENSG00000185624|ENST00000331483|P4HB;P4HB|p.N387Tfs*118|1|0.25|ENSG00000185624|chr17:81845888-81845888|T/-|frameshift_variant;ENST00000576380.5_1_17:79813102-79817234:-|nuORF;ENST00000466567.2_1_17:79817024-79818356:-|nuORF	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MSMS	HCT116MG_D190212_S3	3	627.7783813476562	2	627.777864	1253.54118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.472	1	33.182	32.682	33.682	-0.29013								0	0	0	0.25155	1	12285	12285		65.235	39.836	1				4349	5837	2286	2312	4259	4259					-0.07545302911944418
ATEESDLAQQY	11	Unmodified	_ATEESDLAQQY_					0	0	0		ENSG00000185624|ENST00000331483|P4HB;P4HB|p.N387Tfs*118|1|0.25|ENSG00000185624|chr17:81845888-81845888|T/-|frameshift_variant;ENST00000576380.5_1_17:79813102-79817234:-|nuORF;ENST00000466567.2_1_17:79817024-79818356:-|nuORF	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	HCT116MG_D190212_S4	4	627.7786865234375	2	627.777864	1253.54118	0.63266	0.00039717	0.40662	0.00025527	1.0393	0.00065244	627.7779889958404	33.414	0.18558	33.032	32.943	33.128	-0.38223					9	6	2	0	0	0	0.31512	2	12152	12144;12152		62.573	37.173	1	7280600			4350	5837	2286	2312	4260;4261	4261					-0.07545302911944418
ATEESDLAQQY	11	Unmodified	_ATEESDLAQQY_					0	0	0		ENSG00000185624|ENST00000331483|P4HB;P4HB|p.N387Tfs*118|1|0.25|ENSG00000185624|chr17:81845888-81845888|T/-|frameshift_variant;ENST00000576380.5_1_17:79813102-79817234:-|nuORF;ENST00000466567.2_1_17:79817024-79818356:-|nuORF	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MATCH	HCT116MG_D190212_S1	1		2	627.777864	1253.54118	0.89692	0.00056307	0.21187	0.00013301	1.1088	0.00069608	627.7776622119601	33.042	0.20798	33.042	32.933	33.141	0	0.043785	0.00025285	NaN	62.573	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4443100			4351	5837	2286	2312							-0.07545302911944418
ATEFIMNEY	9	Unmodified	_ATEFIMNEY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	559.3413696289062	2	559.247157	1116.47976	0.37689	0.00021077	0.5901	0.00033001	0.96699	0.00054079	559.749473907952	49.287	0.15411	49.287	49.183	49.337	0					4	2	2	0	0	0	0.031089	2	18776	18776;18796		85.272	54.635	1	5936900			4352	741	2287	2313	4262;4263	4262					-0.07381906144928507
ATEFIMNEY	9	Unmodified	_ATEFIMNEY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1117.487548828125	1	1117.48704	1116.47976	0.55781	0.00062335	0.59915	0.00066955	1.157	0.0012929	1117.4869544503265	49.261	0.20605	49.261	49.131	49.337	0					6	3	2	0	0	0	0.0090481	1	18792	18792		115.69	63.424	1	19957000			4353	741	2287	2313	4264	4264					-0.07381906144928507
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S1	1	608.3148193359375	2	608.314417	1214.61428	0.42364	0.0002577	0.1188	7.227E-05	0.54244	0.00032997	608.3145261085565	23.392	0.20892	23.392	23.262	23.471	0					5	3	2	0	0	0	2.7322E-15	1	8352	8352		221.57	173.97	1	13963000			4354	2597	2288	2314	4265	4265					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	HCT116MG_D190212_S1	1	405.8786315917969	3	405.878704	1214.61428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.457	1	23.457	22.957	23.957	0								0	0	0	6.6251E-05	1	8354	8354		87.442	67.456	1				4355	2597	2288	2314	4266	4266					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S2	2	608.3146362304688	2	608.314417	1214.61428	0.76692	0.00046653	-0.50259	-0.00030573	0.26433	0.00016079	608.314049699076	23.917	0.15614	23.534	23.456	23.612	-0.38324					4	2	2	0	0	0	2.7322E-15	1	8575	8575		221.57	168.16	1	11874000			4356	2597	2288	2314	4267	4267					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	608.31494140625	2	608.314417	1214.61428	0.48689	0.00029618	0.13919	8.4673E-05	0.62608	0.00038085	608.3143054888915	23.357	0.2606	23.317	23.187	23.448	-0.03968					10	4	3	0	0	0	2.7322E-15	1	8245	8245		221.57	168.16	1	12715000			4357	2597	2288	2314	4268	4268					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	405.8785400390625	3	405.878704	1214.61428	0.010735	4.3573E-06	-0.11225	-4.5561E-05	-0.10152	-4.1204E-05	405.878586707479	23.357	0.2606	23.317	23.187	23.448	-0.03968					11	4	3	0	0	0	0.002302	1	8253	8253		118.97	79.045	1	11183000			4358	2597	2288	2314	4269	4269					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S4	4	608.3146362304688	2	608.314417	1214.61428	0.92503	0.00056271	-0.26284	-0.00015989	0.66219	0.00040282	608.3141791480049	23.677	0.36398	23.429	23.272	23.636	-0.24775					14	6	4	0	0	0	1.1793E-16	1	8313	8313		235.01	173.41	1	12975000			4359	2597	2288	2314	4270	4270					0.015558706013280243
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S4	4	405.87872314453125	3	405.878704	1214.61428	0.0808	3.2795E-05	0.12108	4.9145E-05	0.20188	8.194E-05	405.8786136744714	23.67	0.20798	23.422	23.324	23.532	-0.24775					6	3	2	0	0	0	0.038201	1	8314	8314		93.336	50.501	1	6947600			4360	2597	2288	2314	4271	4271					0.015558706013280243
ATEIRLLK	8	Unmodified	_ATEIRLLK_					0	0	0			REV__ENSG00000184571|ENST00000616349|PIWIL3	REV__ENSG00000184571|ENST00000616349|PIWIL3	MSMS	HCT116MG_D190212_S2	2	472.3001403808594	2	472.300384	942.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.487	1	16.145	15.645	16.645	-0.34183								0	0	0	0.8837	1	5551	5551		12.532	3.1841	1		+		4361	13806	2289	2315	4272	4272					0.11262637202571568
ATEKHLQKY	9	Unmodified	_ATEKHLQKY_					0	0	0		DCPS|p.R145H|1|0.42|ENSG00000110063|chr11:126331462-126331462|G/A|missense_variant;ENSG00000110063|ENST00000263579|DCPS	DCPS|p.R145H|1|0.42|ENSG00000110063|chr11:126331462-126331462|G/A|missense_variant	DCPS|p.R145H|1|0.42|ENSG00000110063|chr11:126331462-126331462|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	559.8060913085938	2	559.303655	1116.59276	0.38061	0.00021288	-0.023587	-1.3192E-05	0.35703	0.00019969	559.303566514484	16.676	0.26035	16.334	16.204	16.464	-0.34183					11	4	4	0	0	0	4.893E-05	1	5643	5643		208.15	154.31	1	48237000			4362	651	2290	2316	4273	4273					0.03912530363277256
ATEKHLQKY	9	Unmodified	_ATEKHLQKY_					0	0	0		DCPS|p.R145H|1|0.42|ENSG00000110063|chr11:126331462-126331462|G/A|missense_variant;ENSG00000110063|ENST00000263579|DCPS	DCPS|p.R145H|1|0.42|ENSG00000110063|chr11:126331462-126331462|G/A|missense_variant	DCPS|p.R145H|1|0.42|ENSG00000110063|chr11:126331462-126331462|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	373.2046813964844	3	373.204862	1116.59276	-0.20171	-7.5278E-05	-0.12105	-4.5176E-05	-0.32276	-0.00012045	373.2047801587401	16.676	0.26035	16.334	16.204	16.464	-0.34183					12	4	4	0	0	0	0.010834	1	5650	5650		90.135	60.698	1	19925000			4363	651	2290	2316	4274	4274					0.03912530363277256
ATELKNNSY	9	Unmodified	_ATELKNNSY_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D;ENST00000462641.1_1_22:36907036-36908721:-|nuORF	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	HCT116MG_D190212_S1	1	520.2565307617188	2	520.256371	1038.49819	0.40084	0.00020854	-0.080504	-4.1883E-05	0.32034	0.00016666	520.2562874007398	22.037	0.36557	22.037	21.854	22.22	0					19	6	4	0	0	0	4.4167E-08	1	7784	7784		225.01	146.28	1	56418000			4364	1695	2291	2317	4275	4275					-0.019520281786981286
ATELKNNSY	9	Unmodified	_ATELKNNSY_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D;ENST00000462641.1_1_22:36907036-36908721:-|nuORF	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	HCT116MG_D190212_S2	2	520.2564086914062	2	520.256371	1038.49819	0.43977	0.00022879	0.0045683	2.3767E-06	0.44434	0.00023117	520.2563230094294	22.514	0.3628	22.128	21.947	22.31	-0.3852					16	6	4	0	0	0	7.2446E-08	1	7964	7964		218.2	139.47	1	177420000			4365	1695	2291	2317	4276	4276					-0.019520281786981286
ATELKNNSY	9	Unmodified	_ATELKNNSY_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D;ENST00000462641.1_1_22:36907036-36908721:-|nuORF	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	HCT116MG_D190212_S2	2	1039.5062255859375	1	1039.50547	1038.49819	0.8406	0.00087381	0.22269	0.00023149	1.0633	0.0011053	1039.5056659255795	22.514	0.20729	22.128	21.999	22.206	-0.3852					6	3	2	0	0	0	3.8859E-05	1	7981	7981		209.87	157.6	1	26201000			4366	1695	2291	2317	4277	4277					-0.019520281786981286
ATELKNNSY	9	Unmodified	_ATELKNNSY_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D;ENST00000462641.1_1_22:36907036-36908721:-|nuORF	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2562866210938	2	520.256371	1038.49819	0.28359	0.00014754	-0.045476	-2.3659E-05	0.23812	0.00012388	520.2562522590034	21.963	0.36445	21.964	21.781	22.146	0.00074577					14	6	3	0	0	0	3.8859E-05	1	7678	7678		209.87	124.23	1	16341000			4367	1695	2291	2317	4278	4278					-0.019520281786981286
ATELKNNSY	9	Unmodified	_ATELKNNSY_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D;ENST00000462641.1_1_22:36907036-36908721:-|nuORF	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1039.50547	1038.49819	0.83787	0.00087097	-0.34135	-0.00035484	0.49652	0.00051613	1039.5048135506252	22.037	0.15654	22.037	21.906	22.063	0	-0.045819	-0.00049349	NaN	209.87	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2311600			4368	1695	2291	2317							-0.019520281786981286
ATELQSMMY	9	Oxidation (M)	_ATELQSMM(Oxidation (M))Y_		ATELQSM(0.117)M(0.883)Y		ATELQSM(-8.8)M(8.8)Y	0	0	1		ENSG00000196284|ENST00000371459|SUPT3H;SUPT3H|p.V80Dfs*3|1|0.04|ENSG00000196284|chr6:45020615-45020616|-/ATATATCC|frameshift_variant;SUPT3H|p.L97*|1|0.21|ENSG00000196284|chr6:45020562-45020562|A/-|frameshift_variant	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.7562866210938	2	545.233193	1088.45183	0.27831	0.00015174	-0.55434	-0.00030224	-0.27603	-0.0001505	545.2329040288577	39.786	0.20579	39.713	39.584	39.79	-0.072838					6	3	2	0	0	0	0.1393	1	14972	14972		50.855	44.132	2	10629000			4369	6057	2292	2318	4279	4279		128			-0.08885552396668572
ATELQSMMY	9	Oxidation (M)	_ATELQSMM(Oxidation (M))Y_		ATELQSM(0.004)M(0.996)Y		ATELQSM(-24)M(24)Y	0	0	1		ENSG00000196284|ENST00000371459|SUPT3H;SUPT3H|p.V80Dfs*3|1|0.04|ENSG00000196284|chr6:45020615-45020616|-/ATATATCC|frameshift_variant;SUPT3H|p.L97*|1|0.21|ENSG00000196284|chr6:45020562-45020562|A/-|frameshift_variant	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	HCT116MG_D190212_S3	3	545.2330322265625	2	545.233193	1088.45183	0.2964	0.0001616	-0.012151	-6.6251E-06	0.28424	0.00015498	545.2329048707609	39.978	0.18779	39.676	39.611	39.799	-0.30137					7	5	2	0	0	0	0.027442	1	14857	14857		88.954	66.218	2	7095400			4370	6057	2292	2318	4280	4280		128			-0.08885552396668572
ATELQSMMY	9	Oxidation (M)	_ATELQSMM(Oxidation (M))Y_		ATELQSM(0.038)M(0.962)Y		ATELQSM(-14)M(14)Y	0	0	1		ENSG00000196284|ENST00000371459|SUPT3H;SUPT3H|p.V80Dfs*3|1|0.04|ENSG00000196284|chr6:45020615-45020616|-/ATATATCC|frameshift_variant;SUPT3H|p.L97*|1|0.21|ENSG00000196284|chr6:45020562-45020562|A/-|frameshift_variant	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MSMS	HCT116MG_D190212_S4	4	545.233154296875	2	545.233193	1088.45183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.092	1	39.713	39.213	40.213	-0.37936								0	0	0	0.023131	1	14697	14697		88.954	58.317	2				4371	6057	2292	2318	4281	4281		128			-0.08885552396668572
ATELQSMMY	9	Unmodified	_ATELQSMMY_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;SUPT3H|p.V80Dfs*3|1|0.04|ENSG00000196284|chr6:45020615-45020616|-/ATATATCC|frameshift_variant;SUPT3H|p.L97*|1|0.21|ENSG00000196284|chr6:45020562-45020562|A/-|frameshift_variant	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	HCT116MG_D190212_S3	3	537.2357788085938	2	537.235735	1072.45692	0.8098	0.00043505	-0.29241	-0.0001571	0.51738	0.00027796	537.2354200722028	48.655	0.35914	48.339	48.14	48.499	-0.31596					10	6	2	0	0	0	0.016701	1	18308	18308		99.799	69.162	1	12089000			4372	6057	2292	2319	4282	4282					-0.07641248534059741
ATELQSMMY	9	Unmodified	_ATELQSMMY_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;SUPT3H|p.V80Dfs*3|1|0.04|ENSG00000196284|chr6:45020615-45020616|-/ATATATCC|frameshift_variant;SUPT3H|p.L97*|1|0.21|ENSG00000196284|chr6:45020562-45020562|A/-|frameshift_variant	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	HCT116MG_D190212_S3	3	1073.4635009765625	1	1073.46419	1072.45692	0.8236	0.0008841	-0.62788	-0.000674	0.19572	0.0002101	1073.4637361604377	48.638	0.25927	48.322	48.14	48.399	-0.31596					7	4	2	0	0	0	0.042978	1	18316	18316		78.149	38.192	1	9483700			4373	6057	2292	2319	4283	4283					-0.07641248534059741
ATELQSMMY	9	Unmodified	_ATELQSMMY_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;SUPT3H|p.V80Dfs*3|1|0.04|ENSG00000196284|chr6:45020615-45020616|-/ATATATCC|frameshift_variant;SUPT3H|p.L97*|1|0.21|ENSG00000196284|chr6:45020562-45020562|A/-|frameshift_variant	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MSMS	HCT116MG_D190212_S4	4	537.235595703125	2	537.235735	1072.45692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.747	1	48.381	47.881	48.881	-0.36621								0	0	0	0.32965	1	18060	18060		37.974	12.575	1				4374	6057	2292	2319	4284	4284					-0.07641248534059741
ATELQSMMY	9	Unmodified	_ATELQSMMY_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;SUPT3H|p.V80Dfs*3|1|0.04|ENSG00000196284|chr6:45020615-45020616|-/ATATATCC|frameshift_variant;SUPT3H|p.L97*|1|0.21|ENSG00000196284|chr6:45020562-45020562|A/-|frameshift_variant	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MSMS	HCT116MG_D190212_S4	4	537.5676879882812	2	537.235735	1072.45692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.771	1	48.405	47.905	48.905	-0.365								0	0	0	0.59795	1	18069	18069		24.021	4.7636	1				4375	6057	2292	2319	4285	4285					-0.07641248534059741
ATELSDSGY	9	Unmodified	_ATELSDSGY_					0	0	0			REV__ENSG00000086288|ENST00000199447|NME8	REV__ENSG00000086288|ENST00000199447|NME8	MSMS	HCT116MG_D190212_S2	2	471.70745849609375	2	471.70618	941.397806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.766	1	15.431	14.931	15.931	-0.33451								0	0	0	0.64498	1	5261	5261		21.747	3.6117	1		+		4376	10932	2293	2320	4286	4286					-0.0752368523237692
ATELTHEDY	9	Unmodified	_ATELTHEDY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	HCT116MG_D190212_S1	1	539.7380981445312	2	539.738011	1077.46147	0.45784	0.00024711	0.04229	2.2826E-05	0.50013	0.00026994	539.7378996759056	26.947	0.25998	26.947	26.813	27.073	0					12	4	3	0	0	0	0.00024997	1	9758	9758		196.65	152.79	1	39059000			4377	4810	2294	2321	4287	4287					-0.0741632479528107
ATELTHEDY	9	Unmodified	_ATELTHEDY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	HCT116MG_D190212_S2	2	539.738525390625	2	539.738011	1077.46147	0.75744	0.00040882	-0.12289	-6.6328E-05	0.63455	0.00034249	539.7379096659018	27.353	0.46556	27	26.871	27.336	-0.35254					14	8	3	0	0	0	0.00024997	1	9936	9936		196.65	152.79	1	61425000			4378	4810	2294	2321	4288	4288					-0.0741632479528107
ATEPLGLEPP	10	Unmodified	_ATEPLGLEPP_					0	0	0		ENST00000222345.10_1_19:38571927-38572134:+|nuORF	ENST00000222345.10_1_19:38571927-38572134:+|nuORF	ENST00000222345.10_1_19:38571927-38572134:+|nuORF	MSMS	HCT116MG_D190212_S3	3	512.2698974609375	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.067	1	30.806	30.306	31.306	-0.26071								0	0	0	0.90475	1	11336	11336		14.838	4.7643	1				4379	6757	2295	2322	4289	4289					0.018063304864767815
ATEQDETAPAQ	11	Unmodified	_ATEQDETAPAQ_					0	0	0			REV__MAGEA12|p.E35D|1|0.86|ENSG00000213401|chrX:152736266-152736266|G/T|missense_variant	REV__MAGEA12|p.E35D|1|0.86|ENSG00000213401|chrX:152736266-152736266|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	580.7577514648438	2	580.756932	1159.49931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.251	1	16.337	15.837	16.837	0.085424								0	0	0	0.94269	1	5379	5379		10.151	1.4052	1		+		4380	16999	2296	2323	4290	4290					-0.07405858600463944
ATERDLMAW	9	Unmodified	_ATERDLMAW_					0	0	0		BRWD3|p.A1140Lfs*42|2|0.13|ENSG00000165288|chrX:80691886-80691886|C/-|frameshift_variant;BRWD3|p.F1372Qfs*6|1|0.03|ENSG00000165288|chrX:80684129-80684130|-/AATTG|frameshift_variant;nc|ENSG00000165288|Q6RI45-5|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000497335.1_1_X:79973070-79975054:-|nuORF;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3	BRWD3|p.A1140Lfs*42|2|0.13|ENSG00000165288|chrX:80691886-80691886|C/-|frameshift_variant	BRWD3|p.A1140Lfs*42|2|0.13|ENSG00000165288|chrX:80691886-80691886|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	546.259033203125	2	546.760766	1091.50698	0.41298	0.0002258	-1.5846	-0.00086637	-1.1716	-0.00064057	546.759764258808	19.456	0.36459	19.516	19.386	19.75	0.05983					8	6	2	0	0	0	0.2025	1	6659	6659		25.399	0	1	7473800			4381	282	2297	2324	4291	4291					-0.035113778139020724
ATESALHF	8	Unmodified	_ATESALHF_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;SHPRH|p.K420Ifs*4|1|0.09|ENSG00000146414|chr6:145946295-145946296|-/ATATA|frameshift_variant;SHPRH|p.G458Rfs*9|1|0.36|ENSG00000146414|chr6:145945587-145945588|-/T|frameshift_variant;nc|ENSG00000146414|Q149N8-5|SHPRH;SHPRH|p.G458Efs*26|2|0.28|ENSG00000146414|chr6:145945588-145945588|T/-|frameshift_variant;SHPRH|p.L762Wfs*6|1|0.29|ENSG00000146414|chr6:145941828-145941828|A/-|frameshift_variant;nc|ENSG00000146414|Q149N8-2|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MSMS	HCT116MG_D190212_S2	2	438.21441650390625	2	438.216517	874.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.083	1	14.756	14.256	15.256	-0.32684								0	0	0	0.75335	1	4986	4986		26.341	0	1				4382	3948	2298	2325	4292	4292					-0.02375050062050832
ATESFGIMKDP	11	Unmodified	_ATESFGIMKDP_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-MSMS	HCT116MG_D190212_S2	2	599.2516479492188	2	598.286814	1194.55907	0.64496	0.00038587	0.41106	0.00024593	1.056	0.0006318	598.2872084382689	21.045	0.41507	20.662	20.546	20.961	-0.38288					9	7	2	0	0	0	0.71532	1	7346	7346		16.149	1.3108	1	4918200	+		4383	10794	2299	2326	4293	4293					-0.030422591907608876
ATESSNQEY	9	Unmodified	_ATESSNQEY_					0	0	0		HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;nc|ENSG00000072571|O75330-4|HMMR;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	514.7117919921875	2	514.711993	1027.40943	0.32565	0.00016762	-0.0545	-2.8052E-05	0.27115	0.00013956	514.7118367292201	19.775	0.20921	19.775	19.652	19.861	0					7	3	3	0	0	0	0.063511	1	6889	6889		68.081	46.334	1	5005700			4384	1273	2300	2327	4294	4294					-0.10317488209011572
ATESSNQEY	9	Unmodified	_ATESSNQEY_					0	0	0		HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;nc|ENSG00000072571|O75330-4|HMMR;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	514.7125854492188	2	514.711993	1027.40943	0.12744	6.5592E-05	-0.14985	-7.7129E-05	-0.022413	-1.1536E-05	514.712070894009	20.109	0.73572	19.734	19.558	20.293	-0.37503					22	13	3	0	0	0	0.0060607	1	7011	7011		128.37	61.022	1	31116000			4385	1273	2300	2327	4295	4295					-0.10317488209011572
ATESSNQEY	9	Unmodified	_ATESSNQEY_					0	0	0		HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;nc|ENSG00000072571|O75330-4|HMMR;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1028.41748046875	1	1028.41671	1027.40943	0.34989	0.00035983	0.49126	0.00050522	0.84114	0.00086505	1028.4172200191522	20.114	0.25965	19.739	19.61	19.869	-0.37503					8	4	2	0	0	0	0.027492	1	7024	7024		88.904	45.045	1	8806700			4386	1273	2300	2327	4296	4296					-0.10317488209011572
ATESSNQEY	9	Unmodified	_ATESSNQEY_					0	0	0		HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant;nc|ENSG00000072571|O75330-4|HMMR;HMMR|p.K666Nfs*11|1|0.36|ENSG00000072571|chr5:163490420-163490420|A/-|frameshift_variant;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	HMMR|p.I537Nfs*3|1|0.34|ENSG00000072571|chr5:163483093-163483094|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1028.4168701171875	1	1028.41671	1027.40943	0.56304	0.00057904	-0.098675	-0.00010148	0.46437	0.00047756	1028.4163481847402	19.612	0.20823	19.672	19.594	19.802	0.05983					5	3	2	0	0	0	0.071351	1	6772	6772		64.236	39.562	1	1649200			4387	1273	2300	2327	4297	4297					-0.10317488209011572
ATETAPSWYVP	11	Unmodified	_ATETAPSWYVP_					0	0	0			REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	REV__tr|U7SZN4|U7SZN4_FUSNUIsoleucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ileSPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	611.2908325195312	2	611.292953	1220.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.22	1	26.908	26.408	27.408	-0.3114								0	0	0	0.93717	1	9734	9734		13.042	1.5478	1		+		4388	17882	2301	2328	4298	4298					-0.030108994561032887
ATETQPIVY	9	Unmodified	_ATETQPIVY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S1	1	1021.51904296875	1	1021.52005	1020.51278	1.1016	0.0011253	-0.2786	-0.00028459	0.823	0.00084071	1021.5195216123557	37.629	0.52074	37.629	37.395	37.916	0					19	9	3	0	0	0	0.0090481	1	14052	14052		115.69	60.918	1	67988000			4389	3710	2302	2329	4299	4299					0.003340439694284214
ATETQPIVY	9	Unmodified	_ATETQPIVY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S1	1	511.2634582519531	2	511.263665	1020.51278	0.62258	0.0003183	-0.42848	-0.00021907	0.1941	9.9235E-05	511.2634161308056	37.629	0.4167	37.629	37.447	37.863	0					14	7	3	0	0	0	0.01389	1	14068	14068		103.75	55.402	1	27428000			4390	3710	2302	2329	4300	4300					0.003340439694284214
ATETQPIVY	9	Unmodified	_ATETQPIVY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	1021.5201416015625	1	1021.52005	1020.51278	0.51026	0.00052125	0.045275	4.6249E-05	0.55554	0.00056749	1021.5198878692437	37.718	0.4627	37.615	37.435	37.898	-0.10318					19	8	3	0	0	0	0.0090481	1	14131	14131		115.69	41.269	1	240640000			4391	3710	2302	2329	4301	4301					0.003340439694284214
ATETQPIVY	9	Unmodified	_ATETQPIVY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	511.26318359375	2	511.263665	1020.51278	0.081562	4.17E-05	0.057534	2.9415E-05	0.1391	7.1114E-05	511.2636170193868	37.669	0.35968	37.566	37.435	37.795	-0.10318					13	6	3	0	0	0	0.071351	1	14134	14134		64.236	35.749	1	64861000			4392	3710	2302	2329	4302	4302					0.003340439694284214
ATETQPIVY	9	Unmodified	_ATETQPIVY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S3	3	1022.5249633789062	1	1021.52005	1020.51278	0.72528	0.00074089	0.061361	6.2682E-05	0.78665	0.00080357	1021.5198480094829	37.902	0.35088	37.601	37.534	37.885	-0.30137					26	12	3	0	0	0	0.027492	1	14022	14022		88.904	58.267	1	16917000			4393	3710	2302	2329	4303	4303					0.003340439694284214
ATETQPIVY	9	Unmodified	_ATETQPIVY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S3	3	511.26312255859375	2	511.263665	1020.51278	0.26918	0.00013762	-0.12689	-6.4872E-05	0.14229	7.2748E-05	511.26347709761285	37.93	0.22621	37.628	37.555	37.781	-0.30137					14	8	2	0	0	0	0.023938	1	14026	14026		92.491	50.397	1	10738000			4394	3710	2302	2329	4304	4304					0.003340439694284214
ATEYKNEEY	9	Unmodified	_ATEYKNEEY_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.R102I|1|0.43|ENSG00000083896|chr4:68337726-68337726|C/A|missense_variant	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	HCT116MG_D190212_S1	1	573.751220703125	2	573.751118	1145.48768	0.37953	0.00021776	0.036998	2.1228E-05	0.41653	0.00023898	573.7510747884419	22.298	0.31319	22.298	22.115	22.428	0					11	5	3	0	0	0	7.5242E-05	1	7889	7889		203.64	124.04	1	28648000			4395	1440	2303	2330	4305	4305					-0.0792405562381191
ATEYKNEEY	9	Unmodified	_ATEYKNEEY_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.R102I|1|0.43|ENSG00000083896|chr4:68337726-68337726|C/A|missense_variant	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	573.7515258789062	2	573.751118	1145.48768	0.37414	0.00021466	0.00022711	1.303E-07	0.37437	0.00021479	573.7511660478781	22.774	0.3123	22.388	22.258	22.57	-0.3852					12	5	3	0	0	0	0.02327	1	8088	8088		93.166	45.417	1	25868000			4396	1440	2303	2330	4306	4306					-0.0792405562381191
ATEYKNEEY	9	Unmodified	_ATEYKNEEY_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.R102I|1|0.43|ENSG00000083896|chr4:68337726-68337726|C/A|missense_variant	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	HCT116MG_D190212_S3	3	573.7518920898438	2	573.751118	1145.48768	0.43783	0.00025121	0.084003	4.8197E-05	0.52184	0.00029941	573.7511873030637	22.276	0.36497	22.276	22.146	22.511	0.00074577					12	6	3	0	0	0	7.9226E-08	1	7816	7816		216.57	120.2	1	12289000			4397	1440	2303	2330	4307	4307					-0.0792405562381191
ATEYKNEEY	9	Unmodified	_ATEYKNEEY_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.R102I|1|0.43|ENSG00000083896|chr4:68337726-68337726|C/A|missense_variant	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MSMS	HCT116MG_D190212_S4	4	573.7516479492188	2	573.751118	1145.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.641	1	22.403	21.903	22.903	-0.23758								0	0	0	0.37224	1	7887	7887		34.932	7.3033	1				4398	1440	2303	2330	4308	4308					-0.0792405562381191
ATFGTTTTTPV	11	Unmodified	_ATFGTTTTTPV_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	HCT116MG_D190212_S1	1	549.282958984375	2	548.779679	1095.5448	0.39585	0.00021724	-0.047743	-2.62E-05	0.34811	0.00019103	548.7794390100142	25.164	0.41853	25.164	24.882	25.301	0					13	7	3	0	0	0	0.74191	1	8969	8969		5.7319	0	1	7558600	+		4399	11626	2304	2331	4309	4309					0.0008541165254882799
ATFPPNPVAP	10	Unmodified	_ATFPPNPVAP_					0	0	0			REV__nc|ENSG00000204209|Q9UER7-5|DAXX	REV__nc|ENSG00000204209|Q9UER7-5|DAXX	MULTI-SECPEP	HCT116MG_D190212_S3	3	505.256591796875	2	505.768917	1009.52328	0.2191	0.00011081	1.6534	0.00083622	1.8725	0.00094704	506.2709106281661	20.145	0.36448	20.193	19.999	20.363	0.048107					8	6	2	0	0	0	0.30526	1	6933	6933		14.838	2.3067	1	6393700	+		4400	17268	2305	2332	4310	4310					0.018900714145161146
ATGDAVEGYEP	11	Unmodified	_ATGDAVEGYEP_					0	0	0			REV__ENST00000529747.5_1_8:144917890-144921694:-|nuORF	REV__ENST00000529747.5_1_8:144917890-144921694:-|nuORF	MSMS	HCT116MG_D190212_S3	3	554.7422485351562	2	554.743293	1107.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.599	1	39.297	38.797	39.797	-0.30137								0	0	0	0.92983	1	14704	14704		16.149	1.3108	1		+		4401	13832	2306	2333	4311	4311					-0.07740342140846224
ATGLDSDY	8	Unmodified	_ATGLDSDY_					0	0	0			REV__ENST00000582986.5_1_17:62801160-62833227:-|nuORF	REV__ENST00000582986.5_1_17:62801160-62833227:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	840.9142456054688	1	841.357404	840.350128	0.93888	0.00078993	0.3131	0.00026343	1.252	0.0010534	841.3575765746035	31.785	0.25846	31.536	31.406	31.665	-0.24883					7	4	2	0	0	0	0.62424	1	11711	11711		30.225	3.8835	1	39111000	+		4402	15369	2307	2334	4312	4312					-0.07643339432570428
ATGLPGVQGPP	11	Unmodified	_ATGLPGVQGPP_					0	0	0		ENST00000486080.5_1_6:70926602-70955360:-|nuORF;ENST00000489611.5_1_6:70926602-70990065:-|nuORF;nc|ENSG00000112280|P20849-2|COL9A1;ENSG00000112280|ENST00000357250|COL9A1	ENST00000486080.5_1_6:70926602-70955360:-|nuORF	ENST00000486080.5_1_6:70926602-70955360:-|nuORF	MSMS	HCT116MG_D190212_S4	4	497.23553466796875	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.764	1	26.463	25.963	26.963	-0.30087								0	0	0	0.86121	1	9550	9550		24.991	6.8446	1				4403	2336	2308	2335	4313	4313					0.03253169926199462
ATGPGPAEPAP	11	Unmodified	_ATGPGPAEPAP_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MSMS	HCT116MG_D190212_S1	1	482.7409362792969	2	482.740357	963.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.189	1	22.189	21.689	22.689	0								0	0	0	0.92235	1	7844	7844		17.113	1.2657	1		+		4404	13685	2309	2336	4314	4314					-0.0170339586186401
ATGPPGPPGP	10	Unmodified	_ATGPPGPPGP_					0	0	0			REV__COL9A1|p.P396Qfs*33|1|0.39|ENSG00000112280|chr6:70270324-70270324|G/-|frameshift_variant;REV__CON__P04258;REV__COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	REV__CON__P04258	MSMS	HCT116MG_D190212_S4	4	424.21820068359375	2	424.21906	846.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.82	1	24.552	24.052	25.052	-0.26881								0	0	0	0.92272	1	8765	8765		10.824	0	1		+	+	4405	10248;10256;10236	2310	2337	4315	4315					-0.005787461994259502
ATGPPRPP	8	Unmodified	_ATGPPRPP_					0	0	0		ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S1	1	396.72174072265625	2	396.72177	791.428987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.842	1	23.842	23.342	24.342	0								0	0	0	0.8837	1	8509	8509		12.532	3.9383	1				4406	7902	2311	2338	4316	4316					0.024929773830308477
ATGRRRRP	8	Unmodified	_ATGRRRRP_					0	0	0			REV__nc|ENSG00000126217|O15068-3|MCF2L	REV__nc|ENSG00000126217|O15068-3|MCF2L	MSMS	HCT116MG_D190212_S3	3	485.27239990234375	2	485.294291	968.574029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.541	1	37.24	36.74	37.74	-0.30137								0	0	0	0.8837	1	13909	13909		7.9102	0	1		+		4407	17118	2312	2339	4317	4317					0.08848458302747986
ATHADEER	8	Unmodified	_ATHADEER_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	HCT116MG_D190212_S4	4	464.23028564453125	2	464.709588	927.404623	-0.58457	-0.00027166	0.75969	0.00035304	0.17512	8.1382E-05	464.70990187596	16.593	0.49093	16.426	16.221	16.712	-0.16664					14	9	2	0	0	0	0.8506	1	5428	5428		5.2307	0	1	1489300			4408	5396	2313	2340	4318	4318					-0.06198327561139649
ATHLSPAL	8	Unmodified	_ATHLSPAL_					0	0	0		TRIM9|p.N657Kfs*9|1|0.29|ENSG00000100505|chr14:50979486-50979487|-/T|frameshift_variant;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9;TRIM9|p.A268Pfs*14|1|0.38|ENSG00000100505|chr14:51094138-51094138|C/-|frameshift_variant;nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9	TRIM9|p.N657Kfs*9|1|0.29|ENSG00000100505|chr14:50979486-50979487|-/T|frameshift_variant	TRIM9|p.N657Kfs*9|1|0.29|ENSG00000100505|chr14:50979486-50979487|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	405.2278137207031	2	405.229428	808.444303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.582	1	40.582	40.082	41.082	0								0	0	0	0.8837	1	15257	15257		5.7604	0	1				4409	1716	2314	2341	4319	4319					0.03241844180217868
ATHTQRFCI	9	Unmodified	_ATHTQRFCI_					0	0	0		nc|ENSG00000159588|Q96LX7-3|CCDC17;nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17	nc|ENSG00000159588|Q96LX7-3|CCDC17	nc|ENSG00000159588|Q96LX7-3|CCDC17	MSMS	HCT116MG_D190212_S1	1	538.5940551757812	2	538.768926	1075.5233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.331	1	26.331	25.831	26.831	0								0	0	0	0.76818	1	9509	9509		7.2892	1.5574	1				4410	4416	2315	2342	4320	4320					-0.011442518571357141
ATIFLLFLLSA	11	Unmodified	_ATIFLLFLLSA_					0	0	0		CD79A|p.R131Gfs*61|2|0.5|ENSG00000105369|chr19:41879540-41879540|C/-|frameshift_variant;nc|ENSG00000105369|P11912-2|CD79A;ENSG00000105369|ENST00000221972|CD79A	CD79A|p.R131Gfs*61|2|0.5|ENSG00000105369|chr19:41879540-41879540|C/-|frameshift_variant	CD79A|p.R131Gfs*61|2|0.5|ENSG00000105369|chr19:41879540-41879540|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	605.32177734375	2	604.8681	1207.72165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.539	1	55.249	54.749	55.749	-0.28951								0	0	0	0.95686	1	21067	21067		2.7352	0	1				4411	377	2316	2343	4321	4321					0.12609492273509204
ATIGELAQV	9	Unmodified	_ATIGELAQV_					0	0	0		MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant;ENSG00000198793|ENST00000361445|MTOR	MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant	MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	901.4999389648438	1	901.498923	900.491647	0.92448	0.00083342	-0.065972	-5.9474E-05	0.85851	0.00077394	901.4988282301891	46.006	0.25642	45.905	45.761	46.017	-0.10139					7	4	2	0	0	0	0.0090481	1	17524	17524		115.69	19.407	1	25694000			4412	6273	2317	2344	4322	4322					0.03742078660570769
ATIQQAIKAQ	10	Unmodified	_ATIQQAIKAQ_					0	0	0		ZNF622|p.A131T|1|0.18|ENSG00000173545|chr5:16465275-16465275|C/T|missense_variant	ZNF622|p.A131T|1|0.18|ENSG00000173545|chr5:16465275-16465275|C/T|missense_variant	ZNF622|p.A131T|1|0.18|ENSG00000173545|chr5:16465275-16465275|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	536.3113403320312	2	536.31148	1070.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.739	1	23.677	23.177	24.177	-0.061449								0	0	0	0.85631	1	8396	8396		21.537	1.1224	1				4413	18736	2318	2345	4323	4323					0.07592816880310238
ATITSILQP	9	Unmodified	_ATITSILQP_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MSMS	HCT116MG_D190212_S3	3	472.2759704589844	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.044	1	25.916	25.416	26.416	-0.12795								0	0	0	0.64498	1	9326	9326		21.747	2.4897	1		+		4414	10969	2319	2346	4324	4324					0.06502938211713172
ATKIGLPK	8	Unmodified	_ATKIGLPK_					0	0	0			REV__RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	REV__RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	414.26953125	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.56	1	38.178	37.678	38.678	-0.38163								0	0	0	0.8837	1	14136	14136		5.7319	0.43497	1		+		4415	13455	2320	2347	4325	4325					0.10743580628093241
ATKIGLPK	8	Unmodified	_ATKIGLPK_					0	0	0			REV__RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	REV__RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	414.2696228027344	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.726	1	40.347	39.847	40.847	-0.37828								0	0	0	0.8837	1	14952	14952		3.5965	1.019	1		+		4416	13455	2320	2347	4326	4326					0.10743580628093241
ATKKLDRI	8	Unmodified	_ATKKLDRI_					0	0	0			REV__ENSG00000102547|ENST00000409308|CAB39L	REV__ENSG00000102547|ENST00000409308|CAB39L	MULTI-MSMS	HCT116MG_D190212_S1	1	472.79791259765625	2	472.798009	943.581465	0.29924	0.00014148	-0.20834	-9.8502E-05	0.090898	4.2976E-05	472.7977798610849	15.002	0.26027	15.002	14.806	15.066	0					6	4	2	0	0	0	0.83066	1	4935	4935		7.9102	2.1497	1	2293400	+		4417	11156	2321	2348	4327	4327					0.10741753059789971
ATKKSRNDL	9	Unmodified	_ATKKSRNDL_					0	0	0		CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B;CACNA1B|p.A419T|1|0.11|ENSG00000148408|chr9:137957609-137957609|G/A|missense_variant	CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	516.7935791015625	2	516.793455	1031.57236	0.39449	0.00020387	0.45617	0.00023575	0.85067	0.00043962	516.7936373375201	47.394	1.4527	47.394	46.492	47.944	0					43	28	2	0	0	0	0.41514	1	17864	17864		21.747	13.836	1	16441000			4418	303	2322	2349	4328	4328					0.057833597034687045
ATKRFVQLTP	10	Unmodified	_ATKRFVQLTP_					0	0	0			REV__nc|ENSG00000137868|Q9BX79-3|STRA6	REV__nc|ENSG00000137868|Q9BX79-3|STRA6	MSMS	HCT116MG_D190212_S2	2	387.5655822753906	3	387.564391	1159.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.755	1	18.392	17.892	18.892	-0.36325								0	0	0	0.95511	1	6465	6465		3.5871	0.26742	1		+		4419	12197	2323	2350	4329	4329					0.09789382668373037
ATLALGVP	8	Unmodified	_ATLALGVP_					0	0	0			REV__ENST00000477592.2_1_6:3723492-3723609:-|nuORF	REV__ENST00000477592.2_1_6:3723492-3723609:-|nuORF	MSMS	HCT116MG_D190212_S3	3	371.2288818359375	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.787	1	24.703	24.203	25.203	-0.083694								0	0	0	0.8837	1	8819	8819		10.183	0.83596	1		+		4420	15923	2324	2351	4330	4330					0.06263629811326155
ATLALGVP	8	Unmodified	_ATLALGVP_					0	0	0			REV__ENST00000477592.2_1_6:3723492-3723609:-|nuORF	REV__ENST00000477592.2_1_6:3723492-3723609:-|nuORF	MSMS	HCT116MG_D190212_S4	4	371.2286071777344	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.972	1	24.698	24.198	25.198	-0.27379								0	0	0	0.8837	1	8826	8826		10.183	0.83596	1		+		4421	15923	2324	2351	4331	4331					0.06263629811326155
ATLGDPQLP	9	Unmodified	_ATLGDPQLP_					0	0	0		ENST00000583079.1_1_17:18023566-18025792:+|nuORF;MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant;MYO15A|p.E2245Kfs*8|1|0.44|ENSG00000091536|chr17:18148533-18148533|G/-|frameshift_variant;ENSG00000091536|ENST00000647165|MYO15A	ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENST00000583079.1_1_17:18023566-18025792:+|nuORF	MSMS	HCT116MG_D190212_S3	3	456.2445983886719	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.825	1	35.525	35.025	36.025	-0.30042								0	0	0	0.76718	1	13216	13216		10.824	3.5347	1				4422	1563	2325	2352	4332	4332					0.017177921435177268
ATLGDPQLP	9	Unmodified	_ATLGDPQLP_					0	0	0		ENST00000583079.1_1_17:18023566-18025792:+|nuORF;MYO15A|p.P2208Rfs*45|1|0.09|ENSG00000091536|chr17:18148138-18148138|C/-|frameshift_variant;MYO15A|p.E2245Kfs*8|1|0.44|ENSG00000091536|chr17:18148533-18148533|G/-|frameshift_variant;ENSG00000091536|ENST00000647165|MYO15A	ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENST00000583079.1_1_17:18023566-18025792:+|nuORF	MSMS	HCT116MG_D190212_S4	4	456.2448425292969	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.445	1	26.144	25.644	26.644	-0.30087								0	0	0	0.64498	1	9421	9421		21.747	0	1				4423	1563	2325	2352	4333	4333					0.017177921435177268
ATLGHGVTAS	10	Unmodified	_ATLGHGVTAS_					0	0	0			REV__FAM114A1|p.L320Ffs*5|1|0.25|ENSG00000197712|chr4:38922778-38922779|-/T|frameshift_variant	REV__FAM114A1|p.L320Ffs*5|1|0.25|ENSG00000197712|chr4:38922778-38922779|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	457.2403564453125	2	457.240524	912.466495	0.0081599	3.731E-06	0.18961	8.6699E-05	0.19777	9.043E-05	457.24063510587615	15.174	0.15644	14.847	14.758	14.915	-0.32684					4	2	2	0	0	0	0.48679	1	5041	5041		36.127	0	1	1466300	+		4424	14087	2326	2353	4334	4334					0.006760238580113764
ATLILYEDLV	10	Unmodified	_ATLILYEDLV_					0	0	0		ENST00000592560.1_1_17:42436899-42441082:-|nuORF;ENSG00000161682|ENST00000293443|FAM171A2	ENST00000592560.1_1_17:42436899-42441082:-|nuORF	ENST00000592560.1_1_17:42436899-42441082:-|nuORF	MSMS	HCT116MG_D190212_S4	4	383.88629150390625	3	383.884907	1148.63289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.984	1	27.663	27.163	28.163	-0.32157								0	0	0	0.90892	1	10043	10043		8.4443	0	1				4425	4493	2327	2354	4335	4335					0.06452032243191752
ATLIVLLVVFF	11	Unmodified	_ATLIVLLVVFF_					0	0	0		sp|F5HI32|IR10_HCMVMProteinIRL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL10PE=3SV=1;sp|P16808|IR10_HCMVAProteinIRL10OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	sp|F5HI32|IR10_HCMVMProteinIRL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL10PE=3SV=1	sp|F5HI32|IR10_HCMVMProteinIRL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL10PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	412.2288513183594	3	412.265171	1233.77368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.822	1	22.804	22.304	23.304	-0.018869								0	0	0	0.95954	1	8027	8027		1.3296	0.55311	1				4426	18203	2328	2355	4336	4336					0.1661465568724907
ATLQPPIGQP	10	Unmodified	_ATLQPPIGQP_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MSMS	HCT116MG_D190212_S4	4	511.2874450683594	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.45	1	28.119	27.619	28.619	-0.33138								0	0	0	0.72223	1	10231	10231		36.506	5.2379	1		+		4427	11659	2329	2356	4337	4337					0.05093742960286818
ATMERLEKV	9	Unmodified	_ATMERLEKV_					0	0	0		nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1;nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	MULTI-MSMS	HCT116MG_D190212_S1	1	538.7923583984375	2	538.792066	1075.56958	0.647	0.0003486	0.17127	9.2277E-05	0.81827	0.00044088	538.791923964921	28.19	0.20793	28.19	28.06	28.268	0					5	3	2	0	0	0	0.39716	1	10285	10285		22.775	9.9024	1	8161000			4428	2633	2330	2357	4338	4338					0.03481768254300732
ATMERLEKV	9	Unmodified	_ATMERLEKV_					0	0	0		nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1;nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.791748046875	2	538.792066	1075.56958	0.43036	0.00023187	-0.5478	-0.00029515	-0.11744	-6.3274E-05	538.7916766163798	28.643	0.15309	28.313	28.236	28.389	-0.32987					4	2	2	0	0	0	0.32403	1	10480	10480		28.234	11.121	1	21410000			4429	2633	2330	2357	4339	4339					0.03481768254300732
ATMEWGYPP	9	Unmodified	_ATMEWGYPP_					0	0	0			REV__FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant;REV__FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant	REV__FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	526.231689453125	2	526.23131	1050.44807	0.27095	0.00014258	-0.055194	-2.9045E-05	0.21576	0.00011354	526.2310844681654	18.149	0.67338	17.974	17.584	18.257	-0.17501					15	12	2	0	0	0	0.57626	1	6099	6099		12.532	1.7076	1	1654900	+		4430	16839;16840	2331	2358	4340	4340					-0.07513854108196938
ATNGPGSGHGV	11	Unmodified	_ATNGPGSGHGV_					0	0	0		ENST00000557808.1_1_15:40566252-40568292:+|nuORF	ENST00000557808.1_1_15:40566252-40568292:+|nuORF	ENST00000557808.1_1_15:40566252-40568292:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	477.22564697265625	2	477.225405	952.436257	0.18308	8.7372E-05	1.423	0.00067907	1.606	0.00076644	477.22600871476544	23.566	0.36303	23.183	22.988	23.351	-0.38324					11	6	2	0	0	0	0.71271	1	8423	8423		17.113	17.113	1	12919000			4431	8797	2332	2359	4341	4341					-0.041863348071842665
ATNQYTGAVA	10	Unmodified	_ATNQYTGAVA_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MSMS	HCT116MG_D190212_S1	1	498.2433166503906	2	498.243264	994.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.808	1	22.808	22.308	23.308	0								0	0	0	0.78084	1	8093	8093		31.268	5.0002	1		+		4432	14117	2333	2360	4342	4342					-0.025482973501880224
ATNVNYKQP	9	Unmodified	_ATNVNYKQP_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	HCT116MG_D190212_S4	4	517.7669067382812	2	517.766906	1033.51926	0.020305	1.0513E-05	-0.05584	-2.8912E-05	-0.035535	-1.8399E-05	517.7668390300257	17.803	0.67531	17.628	17.168	17.844	-0.17501					19	12	2	0	0	0	0.32978	1	5850	5850		27.629	2.6717	1	2511700			4433	5702	2334	2361	4343	4343					0.0038398192079966975
ATPAGPGDPP	10	Unmodified	_ATPAGPGDPP_					0	0	0			REV__MAP10|p.A79T|1|0.27|ENSG00000212916|chr1:232805258-232805258|G/A|missense_variant	REV__MAP10|p.A79T|1|0.27|ENSG00000212916|chr1:232805258-232805258|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	440.21246337890625	2	440.213975	878.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.159	1	27.159	26.659	27.659	0								0	0	0	0.92272	1	9843	9843		10.824	0.64053	1		+		4434	17003	2335	2362	4344	4344					-0.03067353924677718
ATPAPRGAP	9	Unmodified	_ATPAPRGAP_					0	0	0			REV__ENST00000393067.7_1_11:111224109-111224400:-|nuORF	REV__ENST00000393067.7_1_11:111224109-111224400:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	419.2325439453125	2	419.232502	836.450451	0.0074755	3.134E-06	0.13733	5.7572E-05	0.1448	6.0706E-05	419.2324579383063	23.337	0.62712	23.09	22.853	23.48	-0.24775					25	11	3	0	0	0	0.24895	1	8136	8136		36.127	1.7253	1	26199000	+		4435	15322	2336	2363	4345	4345					0.025683624117505133
ATPDARGGAAP	11	Unmodified	_ATPDARGGAAP_					0	0	0			REV__PPOX|p.T193Nfs*30|1|0.39|ENSG00000143224|chr1:161168534-161168535|-/A|frameshift_variant	REV__PPOX|p.T193Nfs*30|1|0.39|ENSG00000143224|chr1:161168534-161168535|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	492.2489929199219	2	492.24888	982.483208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.912	1	17.555	17.055	18.055	-0.35647								0	0	0	0.78405	1	6125	6125		34.932	0.53034	1		+		4436	17437	2337	2364	4346	4346					-0.008734752560485504
ATPGRSDPSQP	11	Unmodified	_ATPGRSDPSQP_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	HCT116MG_D190212_S2	2	556.7713012695312	2	556.770177	1111.5258	0.48201	0.00026837	2.5683	0.0014299	3.0503	0.0016983	556.7714817770932	27.611	0.20776	27.269	27.139	27.347	-0.34201					5	3	2	0	0	0	0.69138	1	10065	10065		24.991	3.2443	1	11903000	+		4437	17259	2338	2365	4347	4347					-0.025501249184799235
ATPHSHPRW	9	Unmodified	_ATPHSHPRW_					0	0	0		PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	544.771728515625	2	544.772857	1087.53116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.289	1	27.958	27.458	28.458	-0.33138								0	0	0	0.64498	1	10166	10166		21.747	2.4897	1				4438	9743	2339	2366	4348	4348					-0.009103565453415285
ATPHTPTPPP	10	Unmodified	_ATPHTPTPPP_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|36|2|sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|36|2|sense	MSMS	HCT116MG_D190212_S3	3	508.263916015625	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.314	1	33.023	32.523	33.523	-0.29013								0	0	0	0.86471	1	12222	12222		20.454	0	1		+		4439	16960	2340	2367	4349	4349					0.006768834091303688
ATPNLQQFFPQ	11	Unmodified	_ATPNLQQFFPQ_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MSMS	HCT116MG_D190212_S3	3	645.8301391601562	2	645.827495	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.78	1	30.519	30.019	31.019	-0.26071								0	0	0	0.92886	1	11221	11221		26.268	13.226	1				4440	466;8207	2341	2368	4350	4350					0.007201845634881465
ATPNPYLW	8	Unmodified	_ATPNPYLW_					0	0	0		FOXI1|p.S105Afs*14|2|0.16|ENSG00000168269|chr5:170106264-170106264|G/-|frameshift_variant;FOXI1|p.E265Rfs*15|1|0.21|ENSG00000168269|chr5:170108261-170108262|-/C|frameshift_variant;nc|ENSG00000168269|Q12951-2|FOXI1;FOXI1|p.G259Afs*27|1|0.56|ENSG00000168269|chr5:170108246-170108246|G/-|frameshift_variant;ENSG00000168269|ENST00000306268|FOXI1	FOXI1|p.S105Afs*14|2|0.16|ENSG00000168269|chr5:170106264-170106264|G/-|frameshift_variant	FOXI1|p.S105Afs*14|2|0.16|ENSG00000168269|chr5:170106264-170106264|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	481.2418518066406	2	481.242535	960.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.637	1	20.637	20.137	21.137	0								0	0	0	0.85589	1	7223	7223		18.135	2.2878	1				4441	4995	2342	2369	4351	4351					-0.011298866483002712
ATPPAHPP	8	Unmodified	_ATPPAHPP_					0	0	0		nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;ATAT1|p.P300Hfs*31|2|0.39|ENSG00000137343|chr6:30642937-30642937|C/-|frameshift_variant	nc|ENSG00000137343|Q5SQI0-5|ATAT1;ATAT1|p.P300Hfs*31|2|0.39|ENSG00000137343|chr6:30642937-30642937|C/-|frameshift_variant	nc|ENSG00000137343|Q5SQI0-5|ATAT1	MSMS	HCT116MG_D190212_S3	3	394.2070617675781	2	394.208495	786.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.431	1	23.391	22.891	23.891	-0.03968								0	0	0	0.8837	1	8272	8272		5.7604	0	1				4442	9472;209	2343	2370	4352	4352					0.0006928849170435569
ATPQDPNSAAP	11	Unmodified	_ATPQDPNSAAP_					0	0	0		ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant;nc|ENSG00000140265|Q8IWY8-3|ZSCAN29;nc|ENSG00000140265|Q8IWY8-2|ZSCAN29;ENSG00000140265|ENST00000684362|ZSCAN29	ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant	ZSCAN29|p.P548Qfs*5|1|0.53|ENSG00000140265|chr15:43363962-43363962|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	534.2958374023438	2	534.751453	1067.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.577	1	22.558	22.058	23.058	-0.018869								0	0	0	0.91257	1	7928	7928		18.373	0.93045	1				4443	3658	2344	2371	4353	4353					-0.042692161840932386
ATPSIESYYY	10	Unmodified	_ATPSIESYYY_					0	0	0		tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	597.2892456054688	2	597.271687	1192.52882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.845	1	45.534	45.034	46.034	-0.31094								0	0	0	0.92272	1	17177	17177		10.824	0	1				4444	18477	2345	2372	4354	4354					-0.05974294584325435
ATPSSSHLPA	10	Unmodified	_ATPSSSHLPA_					0	0	0		CLPB|p.G646Afs*86|1|0.4|ENSG00000162129|chr11:72293554-72293554|C/-|frameshift_variant	CLPB|p.G646Afs*86|1|0.4|ENSG00000162129|chr11:72293554-72293554|C/-|frameshift_variant	CLPB|p.G646Afs*86|1|0.4|ENSG00000162129|chr11:72293554-72293554|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	484.24603271484375	2	484.245806	966.47706	0.18431	8.9249E-05	0.33058	0.00016008	0.51489	0.00024933	484.2458778516961	24.637	0.57244	24.553	24.237	24.809	-0.083694					21	10	3	0	0	0	0.34998	1	8732	8732		46.021	2.2486	1	11779000			4445	480	2346	2373	4355	4355					-0.0075199348757450934
ATPTTTATATP	11	Unmodified	_ATPTTTATATP_					0	0	0			REV__ENSG00000126500|ENST00000682287|FLRT1	REV__ENSG00000126500|ENST00000682287|FLRT1	MULTI-MSMS	HCT116MG_D190212_S1	1	516.763916015625	2	516.764029	1031.5135	0.48633	0.00025132	-0.43636	-0.0002255	0.049967	2.5821E-05	516.763803521119	21.004	0.74058	21.004	20.592	21.333	0					19	13	2	0	0	0	0.48186	1	7372	7372		47.749	5.9091	1	4562500	+		4446	11841	2347	2374	4356	4356					-0.0009916138151311316
ATPTTTATATP	11	Unmodified	_ATPTTTATATP_					0	0	0			REV__ENSG00000126500|ENST00000682287|FLRT1	REV__ENSG00000126500|ENST00000682287|FLRT1	MULTI-MSMS	HCT116MG_D190212_S3	3	516.7642822265625	2	516.764029	1031.5135	0.10107	5.2227E-05	0.37041	0.00019141	0.47148	0.00024364	516.7641699492611	20.84	0.8849	20.875	20.246	21.131	0.034473					38	16	3	0	0	0	0.55933	1	7106	7106		39.95	5.548	1	8825900	+		4447	11841	2347	2374	4357	4357					-0.0009916138151311316
ATPTTTATATP	11	Unmodified	_ATPTTTATATP_					0	0	0			REV__ENSG00000126500|ENST00000682287|FLRT1	REV__ENSG00000126500|ENST00000682287|FLRT1	MULTI-SECPEP	HCT116MG_D190212_S3	3	516.2354736328125	2	516.764029	1031.5135	0.10107	5.2227E-05	0.37041	0.00019141	0.47148	0.00024364	516.7641699492611	20.84	0.8849	20.875	20.246	21.131	0.034473					38	16	3	0	0	0	0.33998	1	7044	7044		21.537	21.537	1	8825900	+		4448	11841	2347	2374	4358	4358					-0.0009916138151311316
ATQERTDLY	9	Unmodified	_ATQERTDLY_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	HCT116MG_D190212_S1	1	548.7674560546875	2	548.767103	1095.51965	0.50713	0.0002783	0.2031	0.00011145	0.71023	0.00038975	548.7672074045973	27.567	0.36213	27.567	27.386	27.748	0					8	6	2	0	0	0	0.10244	1	10016	10016		57.722	21.595	1	7915000			4449	2145	2348	2375	4359	4359					-0.02428643149983145
ATQERTDLY	9	Unmodified	_ATQERTDLY_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MATCH	HCT116MG_D190212_S2	2		2	548.767103	1095.51965	0.43122	0.00023664	0.26563	0.00014577	0.69685	0.00038241	548.7673559379887	28.023	0.30884	27.693	27.461	27.77	-0.32987	0.063049	2.9802E-05	NaN	57.722	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8120800			4450	2145	2348	2375							-0.02428643149983145
ATQHIQEIVQ	10	Unmodified	_ATQHIQEIVQ_					0	0	0		SLC9C2|p.K843Nfs*2|1|0.57|ENSG00000162753|chr1:173524080-173524080|T/-|frameshift_variant;ENSG00000162753|ENST00000367714|SLC9C2	SLC9C2|p.K843Nfs*2|1|0.57|ENSG00000162753|chr1:173524080-173524080|T/-|frameshift_variant	SLC9C2|p.K843Nfs*2|1|0.57|ENSG00000162753|chr1:173524080-173524080|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	583.8121337890625	2	583.811845	1165.60914	0.5678	0.00033149	0.31543	0.00018415	0.88323	0.00051564	583.8117103261299	26.222	0.20847	26.072	25.942	26.151	-0.14924					5	3	2	0	0	0	0.73913	1	9427	9427		17.113	3.498	1	6153000			4451	4552	2349	2376	4360	4360					0.03295611529370035
ATQISRRK	8	Unmodified	_ATQISRRK_					0	0	0		BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant;BAZ1A|p.E440Gfs*4|1|0.21|ENSG00000198604|chr14:34794793-34794794|-/C|frameshift_variant;BAZ1A|p.F476Sfs*3|1|0.51|ENSG00000198604|chr14:34792858-34792858|A/-|frameshift_variant;BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant;BAZ1A|p.S944Qfs*34|1|0.38|ENSG00000198604|chr14:34775922-34775922|A/-|frameshift_variant;BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant;BAZ1A|p.R1409Kfs*11|1|0.36|ENSG00000198604|chr14:34761774-34761774|C/-|frameshift_variant;BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant	BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	480.2914733886719	2	480.290882	958.567212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.913	1	30.652	30.152	31.152	-0.26071								0	0	0	0.87079	1	11274	11274		16.942	1.0951	1				4452	252	2350	2377	4361	4361					0.0862710063152008
ATQLAADLLKY	11	Unmodified	_ATQLAADLLKY_					0	0	0		nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1;CTNNAL1|p.C505Vfs*15|1|0.24|ENSG00000119326|chr9:108965456-108965456|A/-|frameshift_variant	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	MULTI-MSMS	HCT116MG_D190212_S2	2	603.840087890625	2	603.840071	1205.66559	0.68288	0.00041235	0.97392	0.00058809	1.6568	0.0010004	603.8400270189182	50.967	0.31086	50.789	50.655	50.966	-0.17869					16	5	4	0	0	0	0.018354	1	19567	19567		132.57	70.965	1	37148000			4453	2633	2351	2378	4362	4362					0.07098239366041525
ATQNCFMQ	8	Unmodified	_ATQNCFMQ_					0	0	0			REV__THBD|p.P496Rfs*10|1|0.4|ENSG00000178726|chr20:23048018-23048018|G/-|frameshift_variant	REV__THBD|p.P496Rfs*10|1|0.4|ENSG00000178726|chr20:23048018-23048018|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	471.6940612792969	2	471.694038	941.373522	0.14182	6.6898E-05	-0.16965	-8.0023E-05	-0.027827	-1.3126E-05	471.6937039343618	16.103	0.31192	16.189	16.029	16.341	0.085424					8	5	2	0	0	0	0.79062	1	5322	5322		12.532	1.7076	1	1004300	+		4454	13612	2352	2379	4363	4363					-0.09950940191242807
ATQPQAEA	8	Unmodified	_ATQPQAEA_					0	0	0			REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	408.1982727050781	2	408.198325	814.382096	-0.54058	-0.00022066	0.55964	0.00022845	0.019068	7.7836E-06	408.19844392984453	18.45	0.36591	18.087	17.851	18.217	-0.36325					11	6	2	0	0	0	0.48901	1	6373	6373		42.095	0	1	6054100	+		4455	10050	2353	2380	4364	4364					-0.03251926958762397
ATQRQIQIK	9	Unmodified	_ATQRQIQIK_					0	0	0		ENSG00000183396|ENST00000330862|TMEM89	ENSG00000183396|ENST00000330862|TMEM89	ENSG00000183396|ENST00000330862|TMEM89	MULTI-SECPEP	HCT116MG_D190212_S2	2	543.2476806640625	2	543.324922	1084.63529	0.41511	0.00022554	-0.071261	-3.8718E-05	0.34385	0.00018682	543.3247574121975	20.292	0.15673	19.913	19.813	19.969	-0.37949					4	2	2	0	0	0	0.25004	1	7048	7048		3.5965	0	1	3593800			4456	5716	2354	2381	4365	4365					0.09635925491511443
ATRDADRIIG	10	Unmodified	_ATRDADRIIG_					0	0	0		tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1	tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1	tr|U7T2F2|U7T2F2_FUSNUSeptumsite-determiningproteinMinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00429PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	363.2001037597656	3	363.2	1086.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.602	1	15.275	14.775	15.775	-0.32684								0	0	0	0.93711	1	5195	5195		4.4062	0.21665	1				4457	18577	2355	2382	4366	4366					0.038344582151466966
ATREPSSGAP	10	Unmodified	_ATREPSSGAP_					0	0	0		ENST00000568924.1_1_16:89367250-89379742:-|nuORF;ENST00000567736.5_1_16:89367250-89371640:-|nuORF	ENST00000568924.1_1_16:89367250-89379742:-|nuORF	ENST00000568924.1_1_16:89367250-89379742:-|nuORF	MSMS	HCT116MG_D190212_S3	3	486.74066162109375	2	486.740888	971.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.127	1	18.203	17.703	18.703	0.076334								0	0	0	0.75654	1	6136	6136		34.402	0.18002	1				4458	8870	2356	2383	4367	4367					-0.019651814929488864
ATRERRLDYQE	11	Unmodified	_ATRERRLDYQE_					0	0	0		ENST00000468472.1_1_3:52847439-52852236:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4	ENST00000468472.1_1_3:52847439-52852236:-|nuORF	ENST00000468472.1_1_3:52847439-52852236:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	479.5796813964844	3	479.57954	1435.71679	0.20133	9.6554E-05	0.10027	4.8087E-05	0.3016	0.00014464	479.5794452049656	18.78	0.31236	18.849	18.667	18.979	0.069159					6	5	2	0	0	0	0.74191	1	6439	6439		2.2527	0.32522	1	1615400			4459	1084	2357	2384	4368	4368					0.0163595639282903
ATRESDKHPP	10	Unmodified	_ATRESDKHPP_					0	0	0		ENST00000395471.7_1_7:56118944-56119136:-|nuORF;ENST00000421312.5_1_7:56099714-56119136:-|nuORF	ENST00000395471.7_1_7:56118944-56119136:-|nuORF	ENST00000395471.7_1_7:56118944-56119136:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	379.68414306640625	3	379.859755	1136.55744	-0.29251	-0.00011111	-0.23874	-9.0689E-05	-0.53125	-0.0002018	379.85966244975367	17.173	0.20804	17.257	17.12	17.329	0.084467					8	3	3	0	0	0	0.86862	1	5723	5723		3.3196	0.68841	1	3529500			4460	7647	2358	2385	4369	4369					-0.005381321645245407
ATRGYSPPP	9	Unmodified	_ATRGYSPPP_					0	0	0			REV__ENST00000375050.5_1_6:32157573-32157942:-|nuORF	REV__ENST00000375050.5_1_6:32157573-32157942:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2428283691406	2	473.243067	944.47158	0.49414	0.00023385	-0.30297	-0.00014338	0.19117	9.0471E-05	473.24285589852406	24.863	1.2474	24.594	24.238	25.485	-0.26881					37	23	2	0	0	0	0.19461	1	8960	8960		41.84	0	1	6178300	+		4461	15209	2359	2386	4370	4370					-0.0028767227937578355
ATRLAEALP	9	Unmodified	_ATRLAEALP_					0	0	0			REV__ENSG00000203883|ENST00000340356|SOX18	REV__ENSG00000203883|ENST00000340356|SOX18	MULTI-MSMS	HCT116MG_D190212_S1	1	471.2744445800781	2	471.274367	940.53418	0.36106	0.00017016	-0.21464	-0.00010116	0.14642	6.9003E-05	471.2741702047827	35.345	0.46635	35.345	35.163	35.63	0					14	8	2	0	0	0	0.33687	1	13150	13150		26.884	7.4447	1	10778000	+		4462	14176	2360	2387	4371	4371					0.061534737887996016
ATRQWQNTL	9	Unmodified	_ATRQWQNTL_					0	0	0			REV__ENST00000564642.1_1_16:2042626-2043070:+|nuORF	REV__ENST00000564642.1_1_16:2042626-2043070:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	559.2922973632812	2	559.291079	1116.56761	0.41651	0.00023295	-0.083444	-4.667E-05	0.33307	0.00018628	559.2909830890698	27.195	0.3125	27.026	26.807	27.12	-0.16933					8	5	2	0	0	0	0.60612	1	9807	9807		10.824	0.75	1	4577000	+		4463	11859	2361	2388	4372	4372					0.013984755607225452
ATRRVRGPG	9	Unmodified	_ATRRVRGPG_					0	0	0			REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	485.2900085449219	2	485.288674	968.562795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.399	1	61.139	60.639	61.639	-0.2602								0	0	0	0.76978	1	23162	23162		1.6526	0	1		+		4464	16986	2362	2389	4373	4373					0.07725636208624564
ATRTLPLSSLP	11	Unmodified	_ATRTLPLSSLP_					0	0	0			REV__ENST00000262958.3_1_19:3163029-3163218:+|nuORF	REV__ENST00000262958.3_1_19:3163029-3163218:+|nuORF	MSMS	HCT116MG_D190212_S3	3	578.1196899414062	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.344	1	33.054	32.554	33.554	-0.29013								0	0	0	0.93552	1	12234	12234		13.906	3.0821	1		+		4465	14644	2363	2390	4374	4374					0.09477659085905543
ATRTSLPTV	9	Unmodified	_ATRTSLPTV_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MSMS	HCT116MG_D190212_S2	2	473.272216796875	2	473.271824	944.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.383	1	33.19	32.69	33.69	-0.19297								0	0	0	0.76694	1	12385	12385		11.64	0.81637	1				4466	9548	2364	2391	4375	4375					0.05461169926184084
ATRYLGLGPL	10	Unmodified	_ATRYLGLGPL_					0	0	0			REV__ENSG00000224940|ENST00000446477|PRRT4	REV__ENSG00000224940|ENST00000446477|PRRT4	MSMS	HCT116MG_D190212_S4	4	530.8124389648438	2	530.811116	1059.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.942	1	50.587	50.087	51.087	-0.35483								0	0	0	0.91906	1	18944	18944		11.64	0.81637	1		+		4467	14305	2365	2392	4376	4376					0.0802602223127451
ATRYPLLIDPQ	11	Unmodified	_ATRYPLLIDPQ_					0	0	0		DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	643.858642578125	2	643.858795	1285.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.153	1	34.767	34.267	35.267	-0.38606								0	0	0	0.94012	1	12864	12864		11.495	0.6952	1				4468	708	2366	2393	4377	4377					0.07161330631652163
ATSAVSLDPP	10	Unmodified	_ATSAVSLDPP_					0	0	0		nc|ENSG00000272398|P25063-2|CD24	nc|ENSG00000272398|P25063-2|CD24	nc|ENSG00000272398|P25063-2|CD24	MULTI-MSMS	HCT116MG_D190212_S4	4	479.2577209472656	2	479.248015	956.481476	0.38058	0.00018239	0.14312	6.8592E-05	0.52371	0.00025099	479.24807799052905	27.923	0.57171	27.602	27.398	27.97	-0.32157					13	10	2	0	0	0	0.51573	1	10048	10048		34.102	3.4659	1	3173900			4469	9661	2367	2394	4378	4378					0.001494709353323742
ATSAWTIHSDV	11	Unmodified	_ATSAWTIHSDV_					0	0	0			REV__ENST00000589335.5_1_17:58329793-58422939:-|nuORF	REV__ENST00000589335.5_1_17:58329793-58422939:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	594.2877197265625	2	594.288202	1186.56185	-0.22731	-0.00013509	0.078038	4.6377E-05	-0.14927	-8.871E-05	594.2882015894045	38.258	0.52052	38.258	37.968	38.488	0					14	9	2	0	0	0	0.70377	1	14330	14330		20.415	2.0414	1	5314200	+		4470	16679	2368	2395	4379	4379					-0.023966677416410676
ATSERDEESS	10	Unmodified	_ATSERDEESS_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4	REV__ENSG00000109920|ENST00000263773|FNBP4	MULTI-SECPEP	HCT116MG_D190212_S3	3	555.3158569335938	2	555.730914	1109.44728	0.31992	0.00017779	0.49238	0.00027363	0.81231	0.00045142	555.731191010281	21.35	0.26389	21.369	21.219	21.483	0.018446					7	4	2	0	0	0	0.30738	1	7399	7399		13.906	13.906	1	7896500	+		4471	11385	2369	2396	4380	4380					-0.1030702201423992
ATSGSGRA	8	Unmodified	_ATSGSGRA_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	HCT116MG_D190212_S2	2	706.3397216796875	1	706.347842	705.340566	0.72081	0.00050915	-0.063117	-4.4582E-05	0.6577	0.00046456	706.3474493371059	37.499	0.46049	37.395	37.18	37.641	-0.10318					15	8	2	0	0	0	0.81821	1	13970	13970		9.3474	0.75416	1	73780000			4472	4701	2370	2397	4381	4381					-0.023890629274319508
ATSHQQYFY	9	Unmodified	_ATSHQQYFY_					0	0	0		ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1;nc|ENSG00000105889|Q6NZ63|STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;nc|ENSG00000105889|Q6NZ63-2|STEAP1B	ENST00000475789.1_1_7:89789075-89791404:+|nuORF	ENST00000475789.1_1_7:89789075-89791404:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	573.2994384765625	2	572.756538	1143.49852	0.38259	0.00021913	-0.74081	-0.00042431	-0.35822	-0.00020518	572.7562181389354	16.847	0.57233	16.506	16.1	16.672	-0.34183					17	10	2	0	0	0	0.24622	1	5592	5592		11.64	0	1	6881900			4473	4711	2371	2398	4382	4382					-0.06748608458860872
ATSHSWEMP	9	Unmodified	_ATSHSWEMP_					0	0	0		ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;ENST00000601147.2_1_19:15514284-15529746:-|nuORF	ENSG00000011243|ENST00000397410|AKAP8L	ENSG00000011243|ENST00000397410|AKAP8L	MSMS	HCT116MG_D190212_S4	4	523.2225952148438	2	523.224017	1044.43348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.083	1	17.908	17.408	18.408	-0.17501								0	0	0	0.76669	1	6045	6045		12.532	0	1				4474	888	2372	2399	4383	4383					-0.08695926256336861
ATSIYCECAK	10	Unmodified	_ATSIYCECAK_					0	0	0			REV__ENST00000523028.5_1_16:21892164-21910369:-|nuORF	REV__ENST00000523028.5_1_16:21892164-21910369:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	544.7401123046875	2	544.741185	1087.46782	0.50533	0.00027527	0.39655	0.00021602	0.90188	0.00049129	544.7413491553567	28.075	1.4971	27.744	26.827	28.324	-0.33138					34	28	2	0	0	0	0.76143	1	9999	9999		15.248	1.3424	1	3003800	+		4475	14826	2373	2400	4384	4384					-0.07241846159786292
ATSLDIMTCLQ	11	Unmodified	_ATSLDIMTCLQ_					0	0	0		PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant;PEAR1|p.P997Lfs*65|1|0.35|ENSG00000187800|chr1:156914670-156914670|C/-|frameshift_variant	PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant	PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	598.2877197265625	2	598.288499	1194.56245	0.58437	0.00034962	0.81407	0.00048705	1.3984	0.00083667	598.2886327426017	28.298	1.1984	28.092	27.603	28.802	-0.20593					42	22	2	0	0	0	0.69464	1	10483	10483		23.79	1.0535	1	20779000			4476	9741	2374	2401	4385	4385					-0.02705332408436334
ATSLDIMTCLQ	11	Unmodified	_ATSLDIMTCLQ_					0	0	0		PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant;PEAR1|p.P997Lfs*65|1|0.35|ENSG00000187800|chr1:156914670-156914670|C/-|frameshift_variant	PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant	PEAR1|p.G1005Afs*57|3|0.33|ENSG00000187800|chr1:156914691-156914691|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	598.289306640625	2	598.288499	1194.56245	1.1064	0.00066194	-0.016059	-9.6082E-06	1.0903	0.00065233	598.2883147348704	28.505	1.4547	28.173	27.492	28.947	-0.33138					57	27	4	0	0	0	0.65047	1	10160	10160		29.841	8.3036	1	17712000			4477	9741	2374	2401	4386	4386					-0.02705332408436334
ATSLGNLTNHG	11	Unmodified	_ATSLGNLTNHG_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	MULTI-MSMS	HCT116MG_D190212_S4	4	542.773193359375	2	542.772719	1083.53089	0.35746	0.00019402	0.30983	0.00016817	0.66729	0.00036219	542.7727444192808	23.541	0.93935	23.293	22.696	23.636	-0.24775					37	17	3	0	0	0	0.6626	1	8132	8132		28.495	2.2264	1	13591000			4478	4126	2375	2402	4387	4387					-0.007538210558550418
ATSPESEITD	10	Unmodified	_ATSPESEITD_					0	0	0			REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	525.2354736328125	2	525.235301	1048.45605	0.34431	0.00018085	-0.55656	-0.00029233	-0.21225	-0.00011148	525.2349957190506	19.116	0.57197	18.929	18.661	19.233	-0.18674					13	10	2	0	0	0	0.82332	1	6521	6521		10.074	0.72649	1	2230000	+		4479	10586	2376	2403	4388	4388					-0.06624048377761937
ATSPFTWPES	10	Unmodified	_ATSPFTWPES_					0	0	0			REV__ENST00000375743.8_1_1:16274950-16302558:-|nuORF	REV__ENST00000375743.8_1_1:16274950-16302558:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	561.7634887695312	2	561.758746	1121.50294	0.36167	0.00020317	3.3798	0.0018986	3.7415	0.0021018	561.7605914802341	19.308	1.9788	19.368	18.188	20.167	0.05983					62	37	2	0	0	0	0.37629	1	6590	6590		43.858	2.0187	1	19813000	+		4480	15219	2377	2404	4389	4389					-0.05295144035949306
ATSPFTWPES	10	Unmodified	_ATSPFTWPES_					0	0	0			REV__ENST00000375743.8_1_1:16274950-16302558:-|nuORF	REV__ENST00000375743.8_1_1:16274950-16302558:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	561.758746	1121.50294	0.36167	0.00020317	3.3798	0.0018986	3.7415	0.0021018	561.7605914802341	19.308	1.9788	19.368	18.188	20.167	0.05983	0.035107	-2.5685E-05	NaN	43.858	62	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19813000	+		4481	15219	2377	2404							-0.05295144035949306
ATSPICRY	8	Unmodified	_ATSPICRY_					0	0	0		HELZ2|p.R1676C|1|0.14|ENSG00000130589|chr20:63563796-63563796|G/A|missense_variant	HELZ2|p.R1676C|1|0.14|ENSG00000130589|chr20:63563796-63563796|G/A|missense_variant	HELZ2|p.R1676C|1|0.14|ENSG00000130589|chr20:63563796-63563796|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	455.7263488769531	2	455.726195	909.437837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.9	1	19.525	19.025	20.025	-0.37503								0	0	0	0.8837	1	6927	6927		14.582	0.67564	1				4482	9212	2378	2405	4390	4390					-0.020504170427898316
ATSPPAHQGEK	11	Unmodified	_ATSPPAHQGEK_					0	0	0		ENST00000262428.4_1_16:84600338-84600413:-|nuORF;COTL1|p.G134Efs*48|1|0.2|ENSG00000103187|chr16:84566873-84566873|C/-|frameshift_variant	ENST00000262428.4_1_16:84600338-84600413:-|nuORF	ENST00000262428.4_1_16:84600338-84600413:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	561.7803955078125	2	561.780544	1121.54654	0.37196	0.00020896	-0.84913	-0.00047702	-0.47717	-0.00026807	561.7802223419919	18.865	0.93671	18.934	18.406	19.343	0.069159					22	17	2	0	0	0	0.3318	2	6453	6430;6453		61.09	32.595	1	2564400			4483	590	2379	2406	4391;4392	4392					-0.009375345388207279
ATSPPAHQGEK	11	Unmodified	_ATSPPAHQGEK_					0	0	0		ENST00000262428.4_1_16:84600338-84600413:-|nuORF;COTL1|p.G134Efs*48|1|0.2|ENSG00000103187|chr16:84566873-84566873|C/-|frameshift_variant	ENST00000262428.4_1_16:84600338-84600413:-|nuORF	ENST00000262428.4_1_16:84600338-84600413:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	561.781005859375	2	561.780544	1121.54654	0.17097	9.6045E-05	-0.44416	-0.00024952	-0.2732	-0.00015348	561.7802623794541	19.097	0.88387	18.911	18.349	19.233	-0.18674					26	16	3	0	0	0	0.46185	1	6342	6342		49.527	25.737	1	1988900			4484	590	2379	2406	4393	4393					-0.009375345388207279
ATSPPEDRP	9	Unmodified	_ATSPPEDRP_					0	0	0		ENSG00000183691|ENST00000332822|NOG	ENSG00000183691|ENST00000332822|NOG	ENSG00000183691|ENST00000332822|NOG	MSMS	HCT116MG_D190212_S2	2	485.23583984375	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.425	1	24.045	23.545	24.545	-0.38003								0	0	0	0.56943	1	8752	8752		25.399	1.3787	1				4485	5734	2380	2407	4394	4394					-0.02916583867238387
ATSPPPHFP	9	Unmodified	_ATSPPPHFP_					0	0	0		ENSG00000153443|ENST00000283474|UBALD1;nc|ENSG00000153443|Q8TB05-2|UBALD1	ENSG00000153443|ENST00000283474|UBALD1	ENSG00000153443|ENST00000283474|UBALD1	MSMS	HCT116MG_D190212_S3	3	475.7378845214844	2	475.74016	949.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.051	1	17.135	16.635	17.635	0.084467								0	0	0	0.64498	1	5702	5702		21.747	0	1				4486	4191	2381	2408	4395	4395					-0.010987707910544486
ATSPRLRAKF	10	Unmodified	_ATSPRLRAKF_					0	0	0		OXCT2|p.P256Rfs*7|1|0.16|ENSG00000198754|chr1:39770489-39770490|GG/-|frameshift_variant;ENSG00000198754|ENST00000327582|OXCT2	OXCT2|p.P256Rfs*7|1|0.16|ENSG00000198754|chr1:39770489-39770490|GG/-|frameshift_variant	OXCT2|p.P256Rfs*7|1|0.16|ENSG00000198754|chr1:39770489-39770490|GG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	573.84130859375	2	573.840739	1145.66693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.837	1	24.753	24.253	25.253	-0.083694								0	0	0	0.91961	1	8839	8839		18.146	9.4009	1				4487	6265	2382	2409	4396	4396					0.09991918245464149
ATSPRSEW	8	Unmodified	_ATSPRSEW_					0	0	0			REV__ENST00000498173.2_1_1:1256180-1260054:-|nuORF	REV__ENST00000498173.2_1_1:1256180-1260054:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	467.2243347167969	2	467.224874	932.435195	0.25541	0.00011933	-0.35437	-0.00016557	-0.098955	-4.6234E-05	467.2245795429785	21.74	1.101	21.758	21.115	22.216	0.018446					33	20	2	0	0	0	0.67912	1	7753	7753		25.399	2.663	1	4695300	+		4488	16107	2383	2410	4397	4397					-0.03372549176094708
ATSPRSEW	8	Unmodified	_ATSPRSEW_					0	0	0			REV__ENST00000498173.2_1_1:1256180-1260054:-|nuORF	REV__ENST00000498173.2_1_1:1256180-1260054:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	467.2249755859375	2	467.224874	932.435195	-0.0091766	-4.2875E-06	0.040139	1.8754E-05	0.030963	1.4467E-05	467.2247664026788	21.913	1.1424	21.694	20.958	22.101	-0.21832					32	21	2	0	0	0	0.76189	1	7645	7645		15.847	15.847	1	5347800	+		4489	16107	2383	2410	4398	4398					-0.03372549176094708
ATSQEEVPP	9	Unmodified	_ATSQEEVPP_					0	0	0		ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3|CECR2	ENSG00000099954|ENST00000262608|CECR2	ENSG00000099954|ENST00000262608|CECR2	MSMS	HCT116MG_D190212_S2	2	479.22943115234375	2	479.229822	956.445091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.548	1	17.199	16.699	17.699	-0.34933								0	0	0	0.71969	1	5979	5979		18.135	2.2878	1				4490	1649	2384	2411	4399	4399					-0.03487405961368495
ATSQFQPASLN	11	Unmodified	_ATSQFQPASLN_					0	0	0		ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	MULTI-MSMS	HCT116MG_D190212_S4	4	582.2874755859375	2	582.288202	1162.56185	0.085273	4.9653E-05	0.24628	0.00014341	0.33156	0.00019306	582.2882762033339	18.223	1.4008	18.048	17.376	18.777	-0.17501					43	26	2	0	0	0	0.69168	1	5962	5962		24.882	9.1429	1	4546400			4491	6597	2385	2412	4400	4400					-0.01292667741608966
ATSRYEPV	8	Unmodified	_ATSRYEPV_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;ENST00000551706.1_1_12:58145281-58145962:-|nuORF	ENSG00000135446|ENST00000257904|CDK4	ENSG00000135446|ENST00000257904|CDK4	MULTI-MSMS	HCT116MG_D190212_S2	2	461.735107421875	2	461.735074	921.455596	0.23912	0.00011041	-0.12875	-5.9448E-05	0.11037	5.096E-05	461.73504994359484	32.007	0.46683	31.776	31.631	32.098	-0.23009					13	8	2	0	0	0	0.62424	1	11862	11862		30.225	2.596	1	7736000			4492	3350	2386	2413	4401	4401					-0.008273785162828062
ATSRYSQAP	9	Unmodified	_ATSRYSQAP_					0	0	0		ENST00000393674.6_1_4:175205011-175205404:-|nuORF	ENST00000393674.6_1_4:175205011-175205404:-|nuORF	ENST00000393674.6_1_4:175205011-175205404:-|nuORF	MSMS	HCT116MG_D190212_S4	4	490.7433776855469	2	490.743431	979.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.692	1	18.512	18.012	19.012	-0.18052								0	0	0	0.53872	1	6291	6291		26.884	1.4843	1				4493	7627	2387	2414	4402	4402					-0.01824877630338051
ATSSQRSWAQW	11	Unmodified	_ATSSQRSWAQW_					0	0	0			REV__ENST00000597017.5_1_19:48886578-48887549:-|nuORF	REV__ENST00000597017.5_1_19:48886578-48887549:-|nuORF	MSMS	HCT116MG_D190212_S3	3	654.3138427734375	2	654.31	1306.60545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.04	1	29.802	29.302	30.302	-0.23868								0	0	0	0.93607	1	10933	10933		13.615	0.5724	1		+		4494	16725	2388	2415	4403	4403					-0.03559058244491098
ATTDPETF	8	Unmodified	_ATTDPETF_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	881.3894653320312	1	881.388704	880.381428	0.5658	0.00049869	0.19946	0.0001758	0.76526	0.00067449	881.388915088768	34.711	0.20787	34.414	34.284	34.492	-0.29707					5	3	2	0	0	0	0.25164	1	12803	12803		63.563	9.9873	1	2655400	+		4495	11201	2389	2416	4404	4404					-0.06354766398453648
ATTLTQALP	9	Unmodified	_ATTLTQALP_					0	0	0			REV__ENST00000585057.5_3_3:127784057-127787523:-|nuORF	REV__ENST00000585057.5_3_3:127784057-127787523:-|nuORF	MSMS	HCT116MG_D190212_S4	4	458.2601318359375	2	458.260925	914.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.505	1	29.156	28.656	29.656	-0.34921								0	0	0	0.76781	1	10658	10658		8.5933	0	1		+		4496	16646	2390	2417	4405	4405					0.04662365177614447
ATTPVSAPPP	10	Unmodified	_ATTPVSAPPP_					0	0	0			REV__DMRT1|p.G259Afs*17|1|0.3|ENSG00000137090|chr9:894146-894146|G/-|frameshift_variant	REV__DMRT1|p.G259Afs*17|1|0.3|ENSG00000137090|chr9:894146-894146|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	469.2520751953125	2	469.2531	936.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.337	1	30.967	30.467	31.467	-0.37026								0	0	0	0.85468	1	11369	11369		21.747	3.6117	1		+		4497	10373	2391	2418	4406	4406					0.020860786605680914
ATVAGEIHLD	10	Unmodified	_ATVAGEIHLD_					0	0	0			REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	513.2672729492188	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.672	1	30.414	29.914	30.914	-0.25796								0	0	0	0.87399	1	11177	11177		19.257	4.0085	1		+		4498	17897	2392	2419	4407	4407					0.007645622009476938
ATVAGEIHLD	10	Unmodified	_ATVAGEIHLD_					0	0	0			REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	REV__tr|U7T0I5|U7T0I5_FUSNUFormate--tetrahydrofolateligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fhsPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	513.2667846679688	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.825	1	30.461	29.961	30.961	-0.36416								0	0	0	0.87399	1	11162	11162		19.257	4.0085	1		+		4499	17897	2392	2419	4408	4408					0.007645622009476938
ATVAPTRAGP	10	Unmodified	_ATVAPTRAGP_					0	0	0		ENST00000429791.5_1_2:242255490-242255664:+|nuORF	ENST00000429791.5_1_2:242255490-242255664:+|nuORF	ENST00000429791.5_1_2:242255490-242255664:+|nuORF	MSMS	HCT116MG_D190212_S2	2	470.7641296386719	2	470.764166	939.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.096	1	30.829	30.329	31.329	-0.26704								0	0	0	0.86471	1	11458	11458		20.454	1.0146	1				4500	7843	2393	2420	4409	4409					0.04160303129003751
ATVARMNSQD	10	Unmodified	_ATVARMNSQD_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-MSMS	HCT116MG_D190212_S2	2	547.259521484375	2	546.758755	1091.50296	0.50944	0.00027854	-0.72574	-0.00039681	-0.21631	-0.00011827	547.2585286005301	26.391	0.93654	26.029	25.713	26.65	-0.36164					37	17	3	0	0	0	0.57664	1	9517	9517		29.841	3.5724	1	22361000			4501	2914	2394	2421	4410	4410					-0.039134673075977844
ATVATATPSTP	11	Unmodified	_ATVATATPSTP_					0	0	0		ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	MSMS	HCT116MG_D190212_S2	2	508.7654113769531	2	508.766571	1015.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.347	1	20.964	20.464	21.464	-0.38288								0	0	0	0.33176	1	7508	7508		56.177	2.3442	1				4502	4528	2395	2422	4411	4411					0.011451424810957178
ATVAVGLQP	9	Unmodified	_ATVAVGLQP_					0	0	0			REV__ENST00000552050.5_2_17:3593972-3595295:-|nuORF	REV__ENST00000552050.5_2_17:3593972-3595295:-|nuORF	MSMS	HCT116MG_D190212_S4	4	428.2501220703125	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.03	1	22.792	22.292	23.292	-0.23758								0	0	0	0.76575	1	8042	8042		15.847	1.2655	1		+		4503	16425	2396	2423	4412	4412					0.053103998687561216
ATVFMSEVTN	10	Unmodified	_ATVFMSEVTN_					0	0	0		CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1;CAMTA1|p.K1259Ifs*22|1|0.18|ENSG00000171735|chr1:7738075-7738076|-/TACAACT|frameshift_variant	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	549.7612915039062	2	549.760432	1097.50631	0.5472	0.00030083	0.43501	0.00023915	0.98221	0.00053998	550.2624205115933	19.394	0.25998	19.207	19.077	19.337	-0.18674					7	4	2	0	0	0	0.77749	1	6592	6592		13.906	0.39817	1	2220500			4504	319	2397	2424	4413	4413					-0.03854217253569914
ATVHFSYAP	9	Unmodified	_ATVHFSYAP_					0	0	0			REV__ENSG00000196781|ENST00000376499|TLE1	REV__ENSG00000196781|ENST00000376499|TLE1	MULTI-MSMS	HCT116MG_D190212_S2	2	496.7452697753906	2	496.745442	991.476331	0.061904	3.075E-05	-1.2939	-0.00064274	-1.232	-0.00061199	496.7448930924598	18.293	0.41765	17.93	17.851	18.269	-0.36325					11	7	2	0	0	0	0.30509	1	6303	6303		30.225	0	1	19166000	+		4505	14045	2398	2425	4414	4414					-0.019747881366242837
ATVLSLSQP	9	Unmodified	_ATVLSLSQP_					0	0	0		ATG9B|p.R10Efs*96|1|0.3|ENSG00000181652|chr7:151024397-151024397|C/-|frameshift_variant	ATG9B|p.R10Efs*96|1|0.3|ENSG00000181652|chr7:151024397-151024397|C/-|frameshift_variant	ATG9B|p.R10Efs*96|1|0.3|ENSG00000181652|chr7:151024397-151024397|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	458.2611389160156	2	458.260925	914.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.126	1	26.774	26.274	27.274	-0.35254								0	0	0	0.74436	1	9840	9840		16.942	2.104	1				4506	217	2399	2426	4415	4415					0.04662365177614447
ATVNHIRLAA	10	Unmodified	_ATVNHIRLAA_					0	0	0			REV__ENST00000480110.5_1_6:26444219-26444576:+|nuORF	REV__ENST00000480110.5_1_6:26444219-26444576:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	533.3118896484375	2	533.311815	1064.60908	0.3815	0.00020346	-0.089294	-4.7622E-05	0.2922	0.00015584	533.3117382604892	21.37	0.25865	20.987	20.859	21.117	-0.38288					8	4	3	0	0	0	0.63157	1	7540	7540		36.506	5.2379	1	27621000	+		4507	10064	2400	2427	4416	4416					0.07935656320023554
ATVNHIRLAA	10	Unmodified	_ATVNHIRLAA_					0	0	0			REV__ENST00000480110.5_1_6:26444219-26444576:+|nuORF	REV__ENST00000480110.5_1_6:26444219-26444576:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	355.8769226074219	3	355.876969	1064.60908	-0.22277	-7.9278E-05	0.29613	0.00010539	0.073363	2.6108E-05	355.8769774660927	21.37	0.31068	20.987	20.859	21.169	-0.38288					10	5	3	0	0	0	0.68309	1	7543	7543		21.799	0.20931	1	19477000	+		4508	10064	2400	2427	4417	4417					0.07935656320023554
ATVNYFTKRG	10	Unmodified	_ATVNYFTKRG_					0	0	0		GABRA5|p.A356Pfs*15|1|0.24|ENSG00000186297|chr15:26943397-26943397|A/-|frameshift_variant;GABRA1|p.P402Tfs*9|1|0.29|ENSG00000022355|chr5:161897251-161897261|CAAGCCCGAAA/-|frameshift_variant;ENSG00000151834|ENST00000381620|GABRA2;nc|ENSG00000151834|P47869-2|GABRA2;ENSG00000022355|ENST00000393943|GABRA1;ENSG00000186297|ENST00000335625|GABRA5	GABRA5|p.A356Pfs*15|1|0.24|ENSG00000186297|chr15:26943397-26943397|A/-|frameshift_variant	GABRA5|p.A356Pfs*15|1|0.24|ENSG00000186297|chr15:26943397-26943397|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	386.20709228515625	3	386.208495	1155.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.999	1	17.083	16.583	17.583	0.084467								0	0	0	0.9356	1	5681	5681		7.9454	0	1				4509	944	2401	2428	4418	4418					0.03207932737564079
ATVTFATQP	9	Unmodified	_ATVTFATQP_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-2|EMSY	REV__nc|ENSG00000158636|Q7Z589-2|EMSY	MSMS	HCT116MG_D190212_S4	4	468.24542236328125	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.103	1	33.718	33.218	34.218	-0.38475								0	0	0	0.74436	1	12439	12439		16.942	1.0951	1		+		4510	12788	2402	2429	4419	4419					0.006137921435083626
ATVVPRPRAER	11	Unmodified	_ATVVPRPRAER_					0	0	0		ENST00000348513.10_1_17:38804349-38804502:-|nuORF	ENST00000348513.10_1_17:38804349-38804502:-|nuORF	ENST00000348513.10_1_17:38804349-38804502:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	626.8692626953125	2	626.367653	1250.72075	0.59853	0.0003749	-0.87163	-0.00054596	-0.2731	-0.00017106	626.3667837230021	49.621	1.5489	49.621	48.819	50.368	0					42	29	2	0	0	0	0.74191	1	18719	18719		3.5871	0.30575	1	31774000			4511	7269	2403	2430	4420	4420					0.1054209067717693
ATVVYLVT	8	Unmodified	_ATVVYLVT_					0	0	0		ENST00000503755.5_1_5:87502254-87524301:-|nuORF;ENST00000457388.1_1_10:37626656-37627235:+|nuORF;TMEM161B|p.F179Lfs*20|1|0.22|ENSG00000164180|chr5:88207093-88207094|-/A|frameshift_variant;nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;TMEM161B|p.L243Ffs*90|1|0.27|ENSG00000164180|chr5:88205885-88205886|-/A|frameshift_variant;ENSG00000164180|ENST00000296595|TMEM161B	ENST00000503755.5_1_5:87502254-87524301:-|nuORF	ENST00000503755.5_1_5:87502254-87524301:-|nuORF	MSMS	HCT116MG_D190212_S1	1	433.25396728515625	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.266	1	33.266	32.766	33.766	0								0	0	0	0.8837	1	12305	12305		4.756	2.1785	1				4512	4677	2404	2431	4421	4421					0.05800168154291896
ATWCLHHICT	10	Unmodified	_ATWCLHHICT_					0	0	0		RHOBTB1|p.A614T|1|0.41|ENSG00000072422|chr10:60872266-60872266|C/T|missense_variant	RHOBTB1|p.A614T|1|0.41|ENSG00000072422|chr10:60872266-60872266|C/T|missense_variant	RHOBTB1|p.A614T|1|0.41|ENSG00000072422|chr10:60872266-60872266|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	593.1576538085938	2	592.770611	1183.52667	0.57597	0.00034142	-1.8103	-0.0010731	-1.2343	-0.00073166	592.7697036703092	51.615	0.31438	51.304	51.12	51.434	-0.31166					7	5	2	0	0	0	0.30895	1	19522	19522		10.074	1.4806	1	3578200			4513	18105	2405	2432	4422	4422					-0.057753250747737184
ATWCLHHICT	10	Unmodified	_ATWCLHHICT_					0	0	0		RHOBTB1|p.A614T|1|0.41|ENSG00000072422|chr10:60872266-60872266|C/T|missense_variant	RHOBTB1|p.A614T|1|0.41|ENSG00000072422|chr10:60872266-60872266|C/T|missense_variant	RHOBTB1|p.A614T|1|0.41|ENSG00000072422|chr10:60872266-60872266|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	592.770611	1183.52667	0.61733	0.00036593	-1.172	-0.00069475	-0.55472	-0.00032882	592.7694802695054	51.472	0.36036	51.289	51.116	51.476	-0.18297	-0.0071847	0.00040278	NaN	10.074	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30929000			4514	18105	2405	2432							-0.057753250747737184
ATWSDPHKA	9	Unmodified	_ATWSDPHKA_					0	0	0		ENST00000577286.5_1_17:79993838-79994415:-|nuORF;ENST00000579842.5_1_17:79993838-79994531:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	MSMS	HCT116MG_D190212_S1	1	506.26080322265625	2	506.745973	1011.47739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.017	1	21.017	20.517	21.517	0								0	0	0	0.2496	1	7374	7374		43.772	16.144	1				4515	5091	2406	2433	4423	4423					-0.02788573767725211
ATWSDPHKA	9	Unmodified	_ATWSDPHKA_					0	0	0		ENST00000577286.5_1_17:79993838-79994415:-|nuORF;ENST00000579842.5_1_17:79993838-79994531:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	ENST00000577286.5_1_17:79993838-79994415:-|nuORF	MSMS	HCT116MG_D190212_S1	1	506.7457275390625	2	506.745973	1011.47739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.089	1	21.089	20.589	21.589	0								0	0	0	0.76718	1	7403	7403		10.824	2.9138	1				4516	5091	2406	2433	4424	4424					-0.02788573767725211
ATWSLCFGDP	10	Unmodified	_ATWSLCFGDP_					0	0	0			REV__TNC|p.R1637C|1|0.41|ENSG00000041982|chr9:115046626-115046626|G/A|missense_variant	REV__TNC|p.R1637C|1|0.41|ENSG00000041982|chr9:115046626-115046626|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	548.741455078125	2	548.742042	1095.46953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.785	1	22.766	22.266	23.266	-0.018869								0	0	0	0.5764	1	8012	8012		43.858	18.459	1		+		4517	17649	2407	2434	4425	4425					-0.07438469079488641
ATYNQLFQL	9	Unmodified	_ATYNQLFQL_					0	0	0			REV__ENST00000486023.1_1_21:47422428-47423924:+|nuORF	REV__ENST00000486023.1_1_21:47422428-47423924:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	550.00244140625	2	549.284931	1096.55531	0.48004	0.00026368	-1.263	-0.00069373	-0.78292	-0.00043004	549.2847079072081	43.667	0.26084	43.36	43.24	43.5	-0.30616					7	4	2	0	0	0	0.25004	1	16299	16299		6.7232	0	1	2993300	+		4518	12345	2408	2435	4426	4426					0.010894390976545765
ATYSRQTEMYK	11	Unmodified	_ATYSRQTEMYK_					0	0	0			REV__ENSG00000106560|ENST00000223293|GIMAP2	REV__ENSG00000106560|ENST00000223293|GIMAP2	MSMS	HCT116MG_D190212_S1	1	689.3270874023438	2	689.327002	1376.63945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.726	1	25.726	25.226	26.226	0								0	0	0	0.92983	1	9266	9266		16.149	3.1066	1		+		4519	11302	2409	2436	4427	4427					-0.0338039786772697
ATYWNELP	8	Unmodified	_ATYWNELP_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MSMS	HCT116MG_D190212_S3	3	497.2364196777344	2	497.23745	992.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.431	1	35.131	34.631	35.631	-0.29922								0	0	0	0.8837	1	13076	13076		10.183	0.83596	1				4520	3254	2410	2437	4428	4428					-0.03618494373529302
ATYYCLQDY	9	Unmodified	_ATYYCLQDY_					0	0	0		nc|ENSG00000239855|A0A0C4DH72|IGKV1-6	nc|ENSG00000239855|A0A0C4DH72|IGKV1-6	nc|ENSG00000239855|A0A0C4DH72|IGKV1-6	MSMS	HCT116MG_D190212_S1	1	570.2411499023438	2	570.239332	1138.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.402	1	30.402	29.902	30.902	0								0	0	0	0.76669	1	11149	11149		12.532	3.1484	1				4521	9650	2411	2438	4429	4429					-0.09958192661974863
AVAAAAPEESA	11	Unmodified	_AVAAAAPEESA_					0	0	0		ENSG00000165506|ENST00000298292|DNAAF2;nc|ENSG00000165506|Q9NVR5-2|DNAAF2	ENSG00000165506|ENST00000298292|DNAAF2	ENSG00000165506|ENST00000298292|DNAAF2	MULTI-MSMS	HCT116MG_D190212_S1	1	493.742919921875	2	493.743096	985.47164	0.41755	0.00020616	-0.1025	-5.0611E-05	0.31504	0.00015555	493.7429217487939	14.9	0.4166	14.9	14.754	15.171	0					12	7	2	0	0	0	0.65731	1	4921	4921		29.082	1.4528	1	1889000			4522	4779	2412	2439	4430	4430					-0.02167717070051367
AVAARCSF	8	Unmodified	_AVAARCSF_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MSMS	HCT116MG_D190212_S3	3	412.7083435058594	2	412.707805	823.401058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.615	1	34.318	33.818	34.818	-0.29707								0	0	0	0.8217	1	12747	12747		20.871	2.7362	1		+		4523	13602	2413	2440	4431	4431					-0.017706688686985217
AVAARCSF	8	Unmodified	_AVAARCSF_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MULTI-MSMS	HCT116MG_D190212_S4	4	412.7080383300781	2	412.707805	823.401058	0.067036	2.7666E-05	0.60477	0.00024959	0.6718	0.00027726	412.7079579240665	34.742	0.35526	34.356	34.187	34.542	-0.38598					10	6	2	0	0	0	0.71835	1	12705	12705		20.871	1.6142	1	6637100	+		4524	13602	2413	2440	4432	4432					-0.017706688686985217
AVAEAEQK	8	Unmodified	_AVAEAEQK_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-SECPEP	HCT116MG_D190212_S2	2	423.20843505859375	2	423.2218	844.429047	0.32538	0.00013771	2.0936	0.00088604	2.4189	0.0010237	423.2236337159382	34.429	0.30968	34.253	34.124	34.433	-0.17512					8	5	2	0	0	0	0.29766	1	12776	12776		14.582	0	1	12658000			4525	1372	2414	2441	4433	4433					0.0006093259238468818
AVAFGAEV	8	Unmodified	_AVAFGAEV_					0	0	0		ENST00000524409.1_1_8:38126642-38126717:-|nuORF;ENST00000528814.1_1_8:38126264-38126717:-|nuORF;nc|ENSG00000147535|Q8NEB5-4|PLPP5;nc|ENSG00000147535|Q8NEB5-2|PLPP5;ENSG00000147535|ENST00000424479|PLPP5	ENST00000524409.1_1_8:38126642-38126717:-|nuORF	ENST00000524409.1_1_8:38126642-38126717:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	763.3990478515625	1	763.398481	762.391205	1.07	0.00081682	0.1103	8.4202E-05	1.1803	0.00090102	763.3983714685447	41.834	0.31248	41.765	41.601	41.913	-0.068199					8	5	2	0	0	0	0.40466	1	15857	15857		49.669	9.2203	1	11923000			4526	3991	2415	2442	4434	4434					0.0005046639756756122
AVAGAKSY	8	Unmodified	_AVAGAKSY_					0	0	0			REV__ENSG00000004846|ENST00000404938|ABCB5	REV__ENSG00000004846|ENST00000404938|ABCB5	MULTI-MSMS	HCT116MG_D190212_S2	2	766.4093017578125	1	766.40938	765.402104	1.043	0.00079933	-0.156	-0.00011956	0.88695	0.00067977	766.4091389278227	26.308	0.25781	25.946	25.818	26.076	-0.36164					7	4	2	0	0	0	0.74206	1	9522	9522		18.135	1.1927	1	29587000	+		4527	10468	2416	2443	4435	4435					0.010018687718456931
AVAGPSGP	8	Unmodified	_AVAGPSGP_					0	0	0		ENST00000473610.5_1_7:150648470-150652738:-|nuORF;ENST00000461280.1_1_7:150646989-150652738:-|nuORF	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	655.341796875	1	655.340966	654.33369	0.77895	0.00051048	-0.022632	-1.4831E-05	0.75632	0.00049565	655.3407850920955	26.438	1.5623	26.289	25.213	26.775	-0.14924					56	29	3	0	0	0	0.11846	1	9243	9243		90.836	31.041	1	26055000			4528	8052	2417	2444	4436	4436					-0.007303758079956424
AVAGPSGP	8	Unmodified	_AVAGPSGP_					0	0	0		ENST00000473610.5_1_7:150648470-150652738:-|nuORF;ENST00000461280.1_1_7:150646989-150652738:-|nuORF	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	655.3413696289062	1	655.340966	654.33369	0.53048	0.00034764	0.24105	0.00015797	0.77153	0.00050562	655.3409502563318	26.638	1.5602	26.337	25.297	26.857	-0.30087					62	29	3	0	0	0	0.21411	1	9208	9208		70.865	11.069	1	23332000			4529	8052	2417	2444	4437	4437					-0.007303758079956424
AVAKNTLQL	9	Unmodified	_AVAKNTLQL_					0	0	0			REV__ENST00000331334.4_1_14:96001039-96001186:+|nuORF	REV__ENST00000331334.4_1_14:96001039-96001186:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2898864746094	2	479.290017	956.565481	0.19536	9.3636E-05	-0.24852	-0.00011911	-0.053159	-2.5478E-05	479.2898136932022	50.927	0.25785	50.749	50.604	50.862	-0.17869					8	4	2	0	0	0	0.59184	1	19568	19568		11.64	0.81637	1	27638000	+		4530	14932	2418	2445	4438	4438					0.0854604682289164
AVAKNTLQL	9	Unmodified	_AVAKNTLQL_					0	0	0			REV__ENST00000331334.4_1_14:96001039-96001186:+|nuORF	REV__ENST00000331334.4_1_14:96001039-96001186:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	479.290017	956.565481	0.19536	9.3636E-05	-0.24852	-0.00011911	-0.053159	-2.5478E-05	479.2898136932022	50.927	0.25785	50.749	50.604	50.862	-0.17869	-0.008223	9.927E-05	NaN	11.64	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27638000	+		4531	14932	2418	2445							0.0854604682289164
AVALRAMK	8	Unmodified	_AVALRAMK_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MSMS	HCT116MG_D190212_S4	4	430.2644958496094	2	430.262748	858.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.67	1	30.306	29.806	30.806	-0.36416								0	0	0	0.8837	1	11100	11100		2.5775	0	1				4532	6627	2419	2446	4439	4439					0.07602756470487293
AVARAEQLRW	10	Unmodified	_AVARAEQLRW_					0	0	0		ENST00000505073.5_1_4:91048743-91048815:+|nuORF	ENST00000505073.5_1_4:91048743-91048815:+|nuORF	ENST00000505073.5_1_4:91048743-91048815:+|nuORF	MSMS	HCT116MG_D190212_S3	3	600.3358764648438	2	600.335821	1198.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.317	1	48.001	47.501	48.501	-0.31596								0	0	0	0.95351	1	18169	18169		3.9444	1.6417	1				4533	8447	2420	2447	4440	4440					0.06570730240082412
AVARENAGPA	10	Unmodified	_AVARENAGPA_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	478.25115966796875	2	478.251423	954.488293	0.28919	0.0001383	-0.43433	-0.00020772	-0.14514	-6.9415E-05	478.25121706639897	18.192	0.56944	18.017	17.688	18.257	-0.17501					14	10	2	0	0	0	0.71349	1	6047	6047		19.257	0	1	1583700			4534	3631	2421	2448	4441	4441					0.00922828606553594
AVASFPKKQE	10	Unmodified	_AVASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	HCT116MG_D190212_S2	2	552.8062133789062	2	552.806031	1103.59751	0.38577	0.00021326	0.070303	3.8864E-05	0.45608	0.00025212	552.8060347835345	22.092	0.67614	21.707	21.427	22.103	-0.38503					35	12	4	0	0	0	0.02711	1	7775	7775		132.13	69.562	1	59287000			4535	2356	2422	2449	4442	4442					0.04985414506040797
AVASFPKKQE	10	Unmodified	_AVASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	HCT116MG_D190212_S2	2	368.87286376953125	3	368.873113	1103.59751	-0.18862	-6.9576E-05	-0.12047	-4.4437E-05	-0.30909	-0.00011401	368.8730604189262	22.022	0.62408	21.637	21.479	22.103	-0.38503					25	11	3	0	0	0	0.12834	1	7798	7798		68.484	36.446	1	16215000			4536	2356	2422	2449	4443	4443					0.04985414506040797
AVASVVAV	8	Unmodified	_AVASVVAV_					0	0	0		PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	715.4354248046875	1	715.434867	714.42759	0.68519	0.00049021	-0.042435	-3.036E-05	0.64276	0.00045985	715.4346760884428	43.586	0.25805	43.586	43.42	43.678	0					8	4	2	0	0	0	0.21411	1	16483	16483		70.865	0	1	23943000			4537	9769	2423	2450	4444	4444					0.0589534329427579
AVASVVAV	8	Unmodified	_AVASVVAV_					0	0	0		PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	715.4352416992188	1	715.434867	714.42759	0.75554	0.00054054	-0.2333	-0.00016691	0.52224	0.00037363	715.4347161763004	43.971	0.311	43.597	43.416	43.727	-0.37373					8	5	2	0	0	0	0.21411	1	16186	16186		70.865	0	1	6550000			4538	9769	2423	2450	4445	4445					0.0589534329427579
AVCPSWKQIAG	11	Unmodified	_AVCPSWKQIAG_					0	0	0			REV__ENST00000447136.1_2_7:2376752-2393878:-|nuORF	REV__ENST00000447136.1_2_7:2376752-2393878:-|nuORF	MSMS	HCT116MG_D190212_S4	4	387.3581237792969	3	387.202465	1158.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.809	1	57.514	57.014	58.014	-0.29465								0	0	0	0.95954	1	21709	21709		0.45452	0	1		+		4539	15681	2424	2451	4446	4446					0.012614744912070819
AVCSAHYKEWN	11	Unmodified	_AVCSAHYKEWN_					0	0	0		ENST00000515007.6_1_5:77784418-77784583:-|nuORF	ENST00000515007.6_1_5:77784418-77784583:-|nuORF	ENST00000515007.6_1_5:77784418-77784583:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	436.5329284667969	3	436.532762	1306.57646	0.065793	2.8721E-05	0.1266	5.5264E-05	0.19239	8.3984E-05	436.53281552655255	32.199	0.25985	31.969	31.838	32.098	-0.23009					7	4	2	0	0	0	0.71498	1	11924	11924		16.275	4.047	1	15919000			4540	8527	2425	2452	4447	4447					-0.06456918865137595
AVDAVYVYKQD	11	Unmodified	_AVDAVYVYKQD_					0	0	0			REV__ENST00000442770.5_1_7:94989287-95024046:-|nuORF	REV__ENST00000442770.5_1_7:94989287-95024046:-|nuORF	MSMS	HCT116MG_D190212_S3	3	636.3070068359375	2	635.819335	1269.62412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.73	1	24.647	24.147	25.147	-0.083694								0	0	0	0.71174	1	8796	8796		38.176	22.026	1		+		4541	11278	2426	2453	4448	4448					9.05860672446579E-05
AVDDDDDS	8	Unmodified	_AVDDDDDS_					0	0	0			REV__ENST00000462135.1_1_7:73118646-73133961:-|nuORF	REV__ENST00000462135.1_1_7:73118646-73133961:-|nuORF	MSMS	HCT116MG_D190212_S3	3	426.1461181640625	2	426.148694	850.282836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.219	1	11.266	10.766	11.766	0.04739								0	0	0	0.8837	1	3433	3433		0.79363	0.10326	1		+		4542	11285	2427	2454	4449	4449					-0.1482941443417758
AVDDDDEGMET	11	Unmodified	_AVDDDDEGMET_					0	0	0		nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;PARD3|p.S1335Lfs*15|1|0.17|ENSG00000148498|chr10:34111237-34111238|-/G|frameshift_variant;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3;nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-5|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3	nc|ENSG00000148498|Q8TEW0-3|PARD3	nc|ENSG00000148498|Q8TEW0-3|PARD3	MSMS	HCT116MG_D190212_S1	1	598.71435546875	2	598.716615	1195.41868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.716	1	19.716	19.216	20.216	0								0	0	0	0.95686	1	6853	6853		2.7352	0.89096	1				4543	4027	2428	2455	4450	4450					-0.17121507705678596
AVDDFNLKY	9	Unmodified	_AVDDFNLKY_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S1	1	542.7691650390625	2	542.769114	1083.52368	0.41157	0.00022338	0.015399	8.3581E-06	0.42696	0.00023174	542.7690444439374	43.756	0.25777	43.756	43.626	43.884	0					12	4	4	0	0	0	0.0081783	1	16542	16542		142.08	88.676	1	114770000		+	4544	585	2429	2456	4451	4451					-0.014745536562713824
AVDDFNLKY	9	Unmodified	_AVDDFNLKY_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7692260742188	2	542.769114	1083.52368	0.75031	0.00040725	-0.32478	-0.00017628	0.42553	0.00023096	542.7688666151568	43.763	0.36007	43.685	43.505	43.865	-0.078373					22	6	4	0	0	0	0.0052024	1	16603	16603		163.04	93.931	1	487230000		+	4545	585	2429	2456	4452	4452					-0.014745536562713824
AVDDFNLKY	9	Unmodified	_AVDDFNLKY_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S2	2	1084.531982421875	1	1084.53095	1083.52368	0.76852	0.00083349	0.085011	9.2197E-05	0.85353	0.00092568	1084.531082367454	43.763	0.25723	43.685	43.556	43.813	-0.078373					10	4	3	0	0	0	0.0035707	1	16628	16628		208.15	126.26	1	40755000		+	4546	585	2429	2456	4453	4453					-0.014745536562713824
AVDDFNLKY	9	Unmodified	_AVDDFNLKY_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S3	3	542.769287109375	2	542.769114	1083.52368	0.57874	0.00031412	0.05904	3.2045E-05	0.63778	0.00034617	542.7689935464908	44.041	0.36434	43.735	43.553	43.917	-0.30616					19	6	4	0	0	0	0.012343	1	16436	16436		129.77	74.27	1	38978000		+	4547	585	2429	2456	4454	4454					-0.014745536562713824
AVDDFNLKY	9	Unmodified	_AVDDFNLKY_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S4	4	542.7691040039062	2	542.769114	1083.52368	0.45734	0.00024823	-0.17548	-9.5248E-05	0.28186	0.00015298	542.7689251034949	44.07	0.31091	43.697	43.571	43.882	-0.37373					9	5	3	0	0	0	0.018739	1	16231	16231		118.07	64.236	1	7601300		+	4548	585	2429	2456	4455	4455					-0.014745536562713824
AVDDFRHKAR	10	Unmodified	_AVDDFRHKAR_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MSMS	HCT116MG_D190212_S3	3	405.910400390625	3	405.551144	1213.6316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.124	1	13.193	12.693	13.693	0.069158								0	0	0	0.96804	1	4143	4143		0.69767	0	1				4549	4240	2430	2457	4456	4456					0.03333255717643624
AVDEDRKMYL	10	Unmodified	_AVDEDRKMYL_					0	0	0		ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	ENSG00000108094|ENST00000374749|CUL2	ENSG00000108094|ENST00000374749|CUL2	MULTI-MSMS	HCT116MG_D190212_S2	2	620.3056640625	2	620.305538	1238.59652	0.40252	0.00024969	-0.096492	-5.9854E-05	0.30603	0.00018983	620.3053274595883	33.981	0.25939	33.806	33.657	33.916	-0.17512					7	4	2	0	0	0	0.060266	1	12651	12651		81.915	54.286	1	21843000			4550	2147	2431	2458	4457	4457					-0.013231679251475725
AVDEDRKMYL	10	Unmodified	_AVDEDRKMYL_					0	0	0		ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	ENSG00000108094|ENST00000374749|CUL2	ENSG00000108094|ENST00000374749|CUL2	MSMS	HCT116MG_D190212_S2	2	413.8726501464844	3	413.872784	1238.59652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.047	1	33.872	33.372	34.372	-0.17512								0	0	0	0.87318	1	12654	12654		12.856	0	1				4551	2147	2431	2458	4458	4458					-0.013231679251475725
AVDEDRKMYL	10	Unmodified	_AVDEDRKMYL_					0	0	0		ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	ENSG00000108094|ENST00000374749|CUL2	ENSG00000108094|ENST00000374749|CUL2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	620.305538	1238.59652	0.59383	0.00036836	-0.11055	-6.8576E-05	0.48328	0.00029978	620.3054692166775	33.767	0.31205	33.767	33.607	33.919	0	-0.019281	-8.7115E-06	NaN	81.915	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5896800			4552	2147	2431	2458							-0.013231679251475725
AVDFAERHGY	10	Unmodified	_AVDFAERHGY_					0	0	0		ENST00000528296.5_1_8:146015816-146017457:-|nuORF;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENSG00000161016|ENST00000528957|RPL8	ENST00000528296.5_1_8:146015816-146017457:-|nuORF	ENST00000528296.5_1_8:146015816-146017457:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	582.775390625	2	582.775262	1163.53597	0.76805	0.0004476	-0.31616	-0.00018425	0.45189	0.00026335	582.7747849454443	29.034	0.2611	29.034	28.903	29.164	0					10	4	3	0	0	0	0.014847	1	10606	10606		132.38	90.54	1	11552000			4553	4476	2432	2459	4459	4459					-0.03925517193238193
AVDFAERHGY	10	Unmodified	_AVDFAERHGY_					0	0	0		ENST00000528296.5_1_8:146015816-146017457:-|nuORF;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENSG00000161016|ENST00000528957|RPL8	ENST00000528296.5_1_8:146015816-146017457:-|nuORF	ENST00000528296.5_1_8:146015816-146017457:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	388.8526611328125	3	388.8526	1163.53597	0.10235	3.98E-05	-0.066734	-2.595E-05	0.035618	1.385E-05	388.8525954659923	29.034	0.20885	29.034	28.903	29.112	0					7	3	3	0	0	0	0.26262	1	10620	10620		39.213	30.461	1	8061200			4554	4476	2432	2459	4460	4460					-0.03925517193238193
AVDFAERHGY	10	Unmodified	_AVDFAERHGY_					0	0	0		ENST00000528296.5_1_8:146015816-146017457:-|nuORF;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF;ENSG00000161016|ENST00000528957|RPL8	ENST00000528296.5_1_8:146015816-146017457:-|nuORF	ENST00000528296.5_1_8:146015816-146017457:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	582.7759399414062	2	582.775262	1163.53597	0.69565	0.00040541	-0.099159	-5.7787E-05	0.59649	0.00034762	582.7751561409818	29.418	0.20585	29.117	28.979	29.185	-0.30095					6	3	2	0	0	0	0.12401	1	10784	10784		69.338	40.257	1	16281000			4555	4476	2432	2459	4461	4461					-0.03925517193238193
AVDGNTVEL	9	Unmodified	_AVDGNTVEL_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	HCT116MG_D190212_S1	1	917.45849609375	1	917.457453	916.450176	0.64801	0.00059452	-0.31922	-0.00029287	0.32879	0.00030165	917.4573812256555	38.998	0.25985	38.998	38.851	39.111	0					6	4	2	0	0	0	0.069315	1	14638	14638		65.235	4.8455	1	7573800			4556	5472	2433	2460	4462	4462					-0.011391020987502998
AVDGNTVEL	9	Unmodified	_AVDGNTVEL_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	HCT116MG_D190212_S2	2	917.4586791992188	1	917.457453	916.450176	0.82404	0.00075603	0.32281	0.00029617	1.1469	0.0010522	917.4576752479791	39.071	0.30925	38.987	38.806	39.115	-0.084618					8	5	2	0	0	0	0.049545	1	14695	14695		74.929	14.539	1	73360000			4557	5472	2433	2460	4463	4463					-0.011391020987502998
AVDGNTVEL	9	Unmodified	_AVDGNTVEL_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	HCT116MG_D190212_S3	3	917.45849609375	1	917.457453	916.450176	0.76157	0.00069871	0.052725	4.8373E-05	0.8143	0.00074708	917.4575242478861	39.27	0.4243	38.969	38.768	39.192	-0.30137					16	7	3	0	0	0	0.069315	1	14572	14572		65.235	4.8455	1	20760000			4558	5472	2433	2460	4464	4464					-0.011391020987502998
AVDGNTVEL	9	Unmodified	_AVDGNTVEL_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	HCT116MG_D190212_S4	4	917.4583129882812	1	917.457453	916.450176	0.78115	0.00071667	0.051235	4.7006E-05	0.83238	0.00076368	917.457365755143	39.369	0.32687	38.989	38.815	39.142	-0.38055					10	7	2	0	0	0	0.069315	1	14466	14466		65.235	4.8455	1	7746800			4559	5472	2433	2460	4465	4465					-0.011391020987502998
AVDHLRSGV	9	Unmodified	_AVDHLRSGV_					0	0	0		AluSx_dup91179|chr16:18786126-18786367:+|16.05338004258843|0.0045621159872568|11.78|480.0|1|1|sense	AluSx_dup91179|chr16:18786126-18786367:+|16.05338004258843|0.0045621159872568|11.78|480.0|1|1|sense	AluSx_dup91179|chr16:18786126-18786367:+|16.05338004258843|0.0045621159872568|11.78|480.0|1|1|sense	MSMS	HCT116MG_D190212_S2	2	477.260986328125	2	477.261791	952.509028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.735	1	23.351	22.851	23.851	-0.38324								0	0	0	0.46961	1	8473	8473		30.225	3.3412	1				4560	111	2434	2461	4466	4466					0.03087418986240209
AVDKLGHLEEI	11	Unmodified	_AVDKLGHLEEI_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MSMS	HCT116MG_D190212_S3	3	612.3355102539062	2	612.335153	1222.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.624	1	34.327	33.827	34.827	-0.29707								0	0	0	0.92235	1	12751	12751		17.113	0.96379	1		+		4561	13678	2435	2462	4467	4467					0.05333051360662466
AVDLQETPAEP	11	Unmodified	_AVDLQETPAEP_					0	0	0			REV__nc|ENSG00000170364|Q53H47-3|SETMAR	REV__nc|ENSG00000170364|Q53H47-3|SETMAR	MSMS	HCT116MG_D190212_S2	2	585.2879638671875	2	585.287868	1168.56118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.491	1	29.19	28.69	29.69	-0.30095								0	0	0	0.8787	1	10805	10805		22.736	2.3217	1		+		4562	13294	2436	2463	4468	4468					-0.016355071813450195
AVDLSHQPPAG	11	Unmodified	_AVDLSHQPPAG_					0	0	0		NOS1|p.C331Pfs*61|1|0.11|ENSG00000089250|chr12:117288210-117288211|-/AAGGG|frameshift_variant;nc|ENSG00000089250|P29475-4|NOS1;NOS1|p.M688Cfs*52|1|0.39|ENSG00000089250|chr12:117265391-117265391|G/-|frameshift_variant;NOS1|p.G676Afs*64|2|0.23|ENSG00000089250|chr12:117265425-117265425|C/-|frameshift_variant;NOS1|p.L911Qfs*6|1|0.04|ENSG00000089250|chr12:117247436-117247439|CCCA/-|frameshift_variant;nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1	NOS1|p.C331Pfs*61|1|0.11|ENSG00000089250|chr12:117288210-117288211|-/AAGGG|frameshift_variant	NOS1|p.C331Pfs*61|1|0.11|ENSG00000089250|chr12:117288210-117288211|-/AAGGG|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	546.2772827148438	2	546.277638	1090.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.285	1	25.178	24.678	25.678	-0.10618								0	0	0	0.90571	1	9020	9020		19.257	0	1				4563	1525	2437	2464	4469	4469					-0.0009263305048534676
AVDPGLLGY	9	Unmodified	_AVDPGLLGY_					0	0	0		ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	HCT116MG_D190212_S2	2	904.4781494140625	1	904.47746	903.470183	0.70021	0.00063333	-0.27943	-0.00025274	0.42078	0.00038059	904.4774550963091	50.215	0.30809	50.043	49.883	50.191	-0.1719					8	5	2	0	0	0	0.019399	1	19258	19258		97.075	26.359	1	24629000			4564	2307	2438	2465	4470	4470					0.014586936318664812
AVDPLGNYMV	10	Unmodified	_AVDPLGNYMV_					0	0	0		SPAG5|p.P250Lfs*21|1|0.43|ENSG00000076382|chr17:28592495-28592495|G/-|frameshift_variant;SPAG5|p.N715Tfs*4|1|0.09|ENSG00000076382|chr17:28584669-28584669|T/-|frameshift_variant;ENSG00000076382|ENST00000321765|SPAG5	SPAG5|p.P250Lfs*21|1|0.43|ENSG00000076382|chr17:28592495-28592495|G/-|frameshift_variant	SPAG5|p.P250Lfs*21|1|0.43|ENSG00000076382|chr17:28592495-28592495|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	539.2958374023438	2	539.765517	1077.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.613	1	54.423	53.923	54.923	-0.1894								0	0	0	0.89062	1	21031	21031		17.113	0	1				4565	1336	2439	2466	4471	4471					-0.019176095283455652
AVDPQHNGY	9	Unmodified	_AVDPQHNGY_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	HCT116MG_D190212_S1	1	500.7279357910156	2	500.727781	999.441008	0.49051	0.00024561	-0.40814	-0.00020437	0.082372	4.1246E-05	500.727512336338	20.982	0.31956	20.982	20.8	21.12	0					9	5	2	0	0	0	0.030723	1	7367	7367		85.642	24.284	1	8652400			4566	5116	2440	2467	4472	4472					-0.058734506644327666
AVDPQHNGY	9	Unmodified	_AVDPQHNGY_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7286682128906	2	500.727781	999.441008	0.34224	0.00017137	0.71321	0.00035713	1.0555	0.0005285	500.7280694020158	21.418	0.31068	21.036	20.859	21.169	-0.38288					12	5	3	0	0	0	0.19218	1	7567	7567		42.095	0	1	17304000			4567	5116	2440	2467	4473	4473					-0.058734506644327666
AVDPRFLAY	9	Unmodified	_AVDPRFLAY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.7608642578125	2	526.282192	1050.54983	0.89723	0.0004722	-0.24103	-0.00012685	0.6562	0.00034535	526.2818880585781	46.762	0.30876	46.651	46.471	46.78	-0.11121					10	5	3	0	0	0	0.20548	1	17798	17798		26.268	15.444	1	16769000			4568	432	2441	2468	4474	4474					0.026577603058285604
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	HCT116MG_D190212_S1	1	1050.5111083984375	1	1050.51022	1049.50294	0.90614	0.00095191	-0.19668	-0.00020661	0.70947	0.0007453	1050.509874360341	37.12	0.36267	37.12	36.938	37.301	0					19	6	4	0	0	0	0.0089033	1	13844	13844		155.03	58.915	1	118900000			4569	3171	2442	2469	4475	4475					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	HCT116MG_D190212_S1	1	525.7589721679688	2	525.758746	1049.50294	0.45441	0.00023891	-0.21276	-0.00011186	0.24166	0.00012705	525.7587088853153	37.128	0.31102	37.128	36.938	37.249	0					12	5	3	0	0	0	0.015946	1	13865	13865		129.77	40.818	1	34264000			4570	3171	2442	2469	4476	4476					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	HCT116MG_D190212_S2	2	1050.5108642578125	1	1050.51022	1049.50294	0.55376	0.00058173	0.23978	0.00025189	0.79353	0.00083361	1050.510433384228	37.206	0.51417	37.103	36.871	37.385	-0.10318					28	9	4	0	0	0	0.0045361	1	13899	13899		168.66	72.548	1	958860000			4571	3171	2442	2469	4477	4477					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.5112915039062	2	525.758746	1049.50294	0.28943	0.00015217	0.29447	0.00015482	0.58389	0.00030699	525.7588739327781	37.206	0.77185	37.103	36.613	37.385	-0.10318					25	14	3	0	0	0	3.2683E-06	1	13950	13950		168.66	76.167	1	655780000			4572	3171	2442	2469	4478	4478					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	HCT116MG_D190212_S3	3	1050.5106201171875	1	1050.51022	1049.50294	0.67201	0.00070596	0.068202	7.1646E-05	0.74021	0.0007776	1050.5101962011167	37.408	0.49094	37.107	36.873	37.364	-0.30137					37	15	5	0	0	0	0.00064427	1	13816	13816		183.04	79.685	1	300630000			4573	3171	2442	2469	4479	4479					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MSMS	HCT116MG_D190212_S3	3	525.759033203125	2	525.758746	1049.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.315	1	37.013	36.513	37.513	-0.30137								0	0	0	1.4154E-06	1	13817	13817		149.91	68.024	1				4574	3171	2442	2469	4480	4480					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	HCT116MG_D190212_S4	4	1050.510498046875	1	1050.51022	1049.50294	0.47414	0.00049809	0.32496	0.00034137	0.7991	0.00083946	1050.5104116458606	37.483	0.3677	37.099	36.874	37.242	-0.3839					22	8	4	0	0	0	0.0045361	1	13727	13727		168.66	65.305	1	68837000			4575	3171	2442	2469	4481	4481					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	HCT116MG_D190212_S4	4	526.2606201171875	2	525.758746	1049.50294	0.27763	0.00014597	-0.16403	-8.624E-05	0.1136	5.9725E-05	525.7586139187981	37.489	0.35642	37.105	36.874	37.231	-0.3839					20	7	4	0	0	0	0.0098262	1	13728	13728		149.91	57.423	1	58172000			4576	3171	2442	2469	4482	4482					-0.01983144035943951
AVDTSSEI	8	Unmodified	_AVDTSSEI_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	HCT116MG_D190212_S3	3	821.38818359375	1	821.388704	820.381428	1.0481	0.0008609	-1.0611	-0.00087159	-0.013019	-1.0693E-05	821.3874386453306	29.19	0.41646	28.968	28.733	29.15	-0.22195					9	7	2	0	0	0	0.23352	1	10613	10613		67.035	10.494	1	4118900			4577	5938	2443	2470	4483	4483					-0.03594766398464344
AVEFPLTHPEY	11	Unmodified	_AVEFPLTHPEY_					0	0	0		ENST00000434820.1_1_2:17566863-17567166:+|nuORF	ENST00000434820.1_1_2:17566863-17567166:+|nuORF	ENST00000434820.1_1_2:17566863-17567166:+|nuORF	MSMS	HCT116MG_D190212_S4	4	434.82843017578125	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.448	1	13.285	12.785	13.785	-0.16233								0	0	0	0.96111	1	4217	4217		0.50596	0.34663	1				4578	7877	2444	2471	4484	4484					-0.009546375306854316
AVEGNVHRME	10	Unmodified	_AVEGNVHRME_					0	0	0		ARHGEF16|p.R698H|1|1.0|ENSG00000130762|chr1:3480550-3480550|G/A|missense_variant	ARHGEF16|p.R698H|1|1.0|ENSG00000130762|chr1:3480550-3480550|G/A|missense_variant	ARHGEF16|p.R698H|1|1.0|ENSG00000130762|chr1:3480550-3480550|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	571.2581176757812	2	571.274572	1140.53459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.429	1	21.447	20.947	21.947	0.018446								0	0	0	0.85631	1	7467	7467		21.537	7.6309	1				4579	179	2445	2472	4485	4485					-0.03005474553674503
AVEQRPNPGP	10	Unmodified	_AVEQRPNPGP_					0	0	0		nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-MSMS	HCT116MG_D190212_S1	1	532.7777099609375	2	532.777805	1063.54106	0.42931	0.00022873	0.239	0.00012734	0.66832	0.00035607	532.7777644655184	20.328	0.41729	20.328	20.07	20.488	0					11	7	2	0	0	0	0.65652	1	7114	7114		24.021	9.1823	1	4084400			4580	3924	2446	2473	4486	4486					0.011827866693920441
AVEQRPNPGP	10	Unmodified	_AVEQRPNPGP_					0	0	0		nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7780151367188	2	532.777805	1063.54106	0.43626	0.00023243	0.0064916	3.4586E-06	0.44276	0.00023589	532.7778737254079	20.941	0.62452	20.558	20.286	20.91	-0.38288					23	11	3	0	0	0	0.65652	1	7351	7351		24.021	3.5669	1	20100000			4581	3924	2446	2473	4487	4487					0.011827866693920441
AVEQRPNPGP	10	Unmodified	_AVEQRPNPGP_					0	0	0		nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7780151367188	2	532.777805	1063.54106	0.40063	0.00021345	0.34035	0.00018133	0.74099	0.00039478	532.777779236776	20.059	0.67707	20.107	19.738	20.416	0.048107					19	12	2	0	0	0	0.65652	1	6932	6932		24.021	4.6586	1	4919500			4582	3924	2446	2473	4488	4488					0.011827866693920441
AVEQRPNPGP	10	Unmodified	_AVEQRPNPGP_					0	0	0		nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	532.777805	1063.54106	0.43626	0.00023243	0.0064916	3.4586E-06	0.44276	0.00023589	532.7778737254079	20.941	0.62452	20.558	20.286	20.91	-0.38288	0.22678	-0.00010622	NaN	24.021	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20100000			4583	3924	2446	2473							0.011827866693920441
AVFLTFLMLFR	11	Unmodified	_AVFLTFLMLFR_					0	0	0		ENST00000548477.5_1_12:113758097-113758427:-|nuORF;ENSG00000089060|ENST00000680972|SLC8B1	ENST00000548477.5_1_12:113758097-113758427:-|nuORF	ENST00000548477.5_1_12:113758097-113758427:-|nuORF	MSMS	HCT116MG_D190212_S1	1	679.3887329101562	2	679.388677	1356.7628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.815	1	15.815	15.315	16.315	0								0	0	0	0.95636	1	5281	5281		2.9952	0.26005	1				4584	1511	2447	2474	4489	4489					0.09868930041307067
AVGDGPPRV	9	Unmodified	_AVGDGPPRV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MSMS	HCT116MG_D190212_S1	1	434.2376708984375	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.857	1	26.857	26.357	27.357	0								0	0	0	0.099502	1	9721	9721		56.177	18.203	1				4585	6342	2448	2475	4490	4490					0.022443450661853603
AVGDGPPRV	9	Unmodified	_AVGDGPPRV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-MSMS	HCT116MG_D190212_S2	2	434.23748779296875	2	434.237784	866.461016	0.16812	7.3003E-05	-0.53962	-0.00023432	-0.3715	-0.00016132	434.2374927058769	27.183	0.47209	26.83	26.554	27.026	-0.35254					12	8	2	0	0	0	0.01389	1	9888	9888		103.75	45.069	1	10706000			4586	6342	2448	2475	4491	4491					0.022443450661853603
AVGIKDPQ	8	Unmodified	_AVGIKDPQ_					0	0	0		nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	nc|ENSG00000173120|Q9Y2K7-4|KDM2A	nc|ENSG00000173120|Q9Y2K7-4|KDM2A	MSMS	HCT116MG_D190212_S1	1	414.2346496582031	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.152	1	22.152	21.652	22.652	0								0	0	0	0.8217	1	7828	7828		20.871	1.4322	1				4587	5273	2449	2476	4492	4492					0.03469826834657397
AVGVKKTV	8	Unmodified	_AVGVKKTV_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;NKRF|p.R664Dfs*7|1|0.22|ENSG00000186416|chrX:119589435-119589435|T/-|frameshift_variant;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MSMS	HCT116MG_D190212_S4	4	401.26171875	2	401.263271	800.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.875	1	57.585	57.085	58.085	-0.29008								0	0	0	0.8837	1	21736	21736		0.79363	0	1				4588	5882	2450	2477	4493	4493					0.10375294111031508
AVGVPLIRPLP	11	Unmodified	_AVGVPLIRPLP_					0	0	0			REV__ENST00000381782.6_2_4:40751996-40752257:+|nuORF	REV__ENST00000381782.6_2_4:40751996-40752257:+|nuORF	MSMS	HCT116MG_D190212_S4	4	566.0208740234375	2	566.366059	1130.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.716	1	50.361	49.861	50.861	-0.35483								0	0	0	0.95521	1	18852	18852		3.5965	0.60125	1		+		4589	15285	2451	2478	4494	4494					0.15743447570457647
AVGVQRLHKTI	11	Unmodified	_AVGVQRLHKTI_					0	0	0			REV__IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant	REV__IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	611.34228515625	2	611.374946	1220.73534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.19	1	56.008	55.508	56.508	-0.18261								0	0	0	0.95196	1	21677	21677		5.2969	0.39987	1		+		4590	12130	2452	2479	4495	4495					0.1338016282531953
AVGVRPRT	8	Unmodified	_AVGVRPRT_					0	0	0		ENST00000261867.4_1_15:45814615-45814984:-|nuORF	ENST00000261867.4_1_15:45814615-45814984:-|nuORF	ENST00000261867.4_1_15:45814615-45814984:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	428.2614440917969	2	428.261594	854.508634	0.022637	9.6944E-06	-0.38068	-0.00016303	-0.35804	-0.00015334	428.26133871333855	49.801	1.9832	49.485	49.028	51.011	-0.31524					82	37	4	0	0	0	0.86388	1	18674	18674		2.8892	0	1	279890000			4591	6858	2453	2480	4496	4496					0.07556044057025701
AVHHHGVS	8	Unmodified	_AVHHHGVS_					0	0	0		ENST00000430252.6_1_6:116575456-116720403:+|nuORF	ENST00000430252.6_1_6:116575456-116720403:+|nuORF	ENST00000430252.6_1_6:116575456-116720403:+|nuORF	MSMS	HCT116MG_D190212_S1	1	422.2144470214844	2	422.214643	842.414734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.745	1	10.745	10.245	11.245	0								0	0	0	0.8837	1	3320	3320		0.79363	0	1				4592	7847	2454	2481	4497	4497					-0.012776750452417218
AVHKCSPK	8	Unmodified	_AVHKCSPK_					0	0	0		ENSG00000156853|ENST00000287461|ZNF689	ENSG00000156853|ENST00000287461|ZNF689	ENSG00000156853|ENST00000287461|ZNF689	MSMS	HCT116MG_D190212_S4	4	435.2353210449219	2	435.23673	868.458907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.829	1	13.666	13.166	14.166	-0.16233								0	0	0	0.8837	1	4353	4353		2.5775	0.27475	1				4593	4301	2455	2482	4498	4498					0.01941593056722013
AVHRLFGK	8	Unmodified	_AVHRLFGK_					0	0	0		nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;ENST00000487020.5_1_7:24844051-24854692:-|nuORF	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MSMS	HCT116MG_D190212_S1	1	464.2779846191406	2	464.279786	926.54502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.788	1	54.788	54.288	55.288	0								0	0	0	0.8837	1	21020	21020		2.5775	0.27475	1				4594	1246	2456	2483	4499	4499					0.07880920953755322
AVIDVGINRV	10	Unmodified	_AVIDVGINRV_					0	0	0		nc|ENSG00000065911|P13995-2|MTHFD2;ENSG00000065911|ENST00000394053|MTHFD2	nc|ENSG00000065911|P13995-2|MTHFD2	nc|ENSG00000065911|P13995-2|MTHFD2	MULTI-MSMS	HCT116MG_D190212_S1	1	528.314208984375	2	528.314023	1054.61349	0.19227	0.00010158	0.031732	1.6765E-05	0.22401	0.00011835	528.313909308474	42.769	0.261	42.769	42.639	42.9	0					8	4	2	0	0	0	0.021264	1	16141	16141		118.07	55.496	1	47946000			4595	1162	2457	2484	4500	4500					0.08837120742941806
AVIDVGINRV	10	Unmodified	_AVIDVGINRV_					0	0	0		nc|ENSG00000065911|P13995-2|MTHFD2;ENSG00000065911|ENST00000394053|MTHFD2	nc|ENSG00000065911|P13995-2|MTHFD2	nc|ENSG00000065911|P13995-2|MTHFD2	MULTI-MSMS	HCT116MG_D190212_S2	2	528.3140869140625	2	528.314023	1054.61349	0.59025	0.00031184	0.3165	0.00016721	0.90675	0.00047905	528.3140062755747	42.806	0.3098	42.736	42.585	42.895	-0.069981					9	5	2	0	0	0	0.021264	1	16225	16225		118.07	45.1	1	72096000			4596	1162	2457	2484	4501	4501					0.08837120742941806
AVIEHLERL	9	Unmodified	_AVIEHLERL_					0	0	0		ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	MSMS	HCT116MG_D190212_S2	2	540.3135375976562	2	540.314023	1078.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.274	1	38.181	37.681	38.681	-0.09301								0	0	0	0.14408	1	14374	14374		51.415	5.3943	1				4597	6615	2458	2485	4502	4502					0.0773312074295518
AVIGDVIRV	9	Unmodified	_AVIGDVIRV_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	HCT116MG_D190212_S1	1	471.29248046875	2	471.292559	940.570566	0.034991	1.6491E-05	-0.046702	-2.201E-05	-0.011711	-5.5193E-06	471.29251328584763	48.216	0.2061	48.216	48.1	48.306	0					5	3	2	0	0	0	0.49616	1	18375	18375		17.113	17.113	1	12244000			4598	4796	2459	2486	4503	4503					0.09790350685523208
AVISNFDQRL	10	Unmodified	_AVISNFDQRL_					0	0	0		HDHD3|p.R139Q|1|0.56|ENSG00000119431|chr9:113373939-113373939|C/T|missense_variant	HDHD3|p.R139Q|1|0.56|ENSG00000119431|chr9:113373939-113373939|C/T|missense_variant	HDHD3|p.R139Q|1|0.56|ENSG00000119431|chr9:113373939-113373939|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	581.8140869140625	2	581.814387	1161.61422	0.5587	0.00032506	-0.02539	-1.4772E-05	0.53331	0.00031029	581.8143284571937	29.108	1.6154	28.886	27.9	29.515	-0.22196					93	30	4	0	0	0	0.75066	1	10294	10294		16.149	0.90062	1	136790000			4599	9209	2460	2487	4504	4504					0.0398791539200829
AVKGRLVSIP	10	Unmodified	_AVKGRLVSIP_					0	0	0			REV__ENST00000392341.5_1_17:80196852-80197050:+|nuORF	REV__ENST00000392341.5_1_17:80196852-80197050:+|nuORF	MSMS	HCT116MG_D190212_S4	4	520.467529296875	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.763	1	35.377	34.877	35.877	-0.38606								0	0	0	0.93854	1	13065	13065		7.2892	2.96	1		+		4600	15309	2461	2488	4505	4505					0.13718301502262875
AVKHKLVFK	9	Unmodified	_AVKHKLVFK_					0	0	0			REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MSMS	HCT116MG_D190212_S4	4	357.23565673828125	3	357.234205	1068.68079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.746	1	61.492	60.992	61.992	-0.25457								0	0	0	0.77018	1	23302	23302		0.26902	0.26902	1		+		4601	11520	2462	2489	4506	4506					0.14919195744550962
AVKLSRFFDKV	11	Unmodified	_AVKLSRFFDKV_					0	0	0		ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	MSMS	HCT116MG_D190212_S2	2	655.3848266601562	2	655.38498	1308.75541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.076	1	22.691	22.191	23.191	-0.3852								0	0	0	0.9465	1	8207	8207		8.1555	1.9497	1				4602	3889	2463	2490	4507	4507					0.11337913765260055
AVKNVGLP	8	Unmodified	_AVKNVGLP_					0	0	0			REV__ENSG00000173276|ENST00000310826|ZBTB21	REV__ENSG00000173276|ENST00000310826|ZBTB21	MSMS	HCT116MG_D190212_S4	4	399.2461853027344	2	399.247621	796.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.935	1	42.56	42.06	43.06	-0.37493								0	0	0	0.8837	1	15799	15799		11.114	0	1		+		4603	13431	2464	2491	4508	4508					0.07430721076946156
AVKQLFYLP	9	Unmodified	_AVKQLFYLP_					0	0	0			REV__ENST00000559082.5_1_15:78832772-78834893:+|nuORF	REV__ENST00000559082.5_1_15:78832772-78834893:+|nuORF	MSMS	HCT116MG_D190212_S2	2	539.8169555664062	2	539.81841	1077.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.236	1	37.133	36.633	37.633	-0.10318								0	0	0	0.76611	1	13951	13951		14.582	1.0738	1		+		4604	14486	2465	2492	4509	4509					0.0865609437942112
AVKRHISF	8	Unmodified	_AVKRHISF_					0	0	0			REV__BICD1|p.E218Dfs*13|1|0.07|ENSG00000151746|chr12:32305770-32305771|-/CCTAATC|frameshift_variant	REV__BICD1|p.E218Dfs*13|1|0.07|ENSG00000151746|chr12:32305770-32305771|-/CCTAATC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	479.28668212890625	2	479.285069	956.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.146	1	37.146	36.646	37.646	0								0	0	0	0.8837	1	13869	13869		14.582	3.4672	1		+		4605	10040	2466	2493	4510	4510					0.075569036081788
AVLAAVTEV	9	Unmodified	_AVLAAVTEV_					0	0	0		nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;RRP12|p.R136H|1|0.52|ENSG00000052749|chr10:97396264-97396264|C/T|missense_variant	nc|ENSG00000052749|Q5JTH9-2|RRP12	nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	HCT116MG_D190212_S2	2	872.5101318359375	1	872.50876	871.501483	1.0768	0.00093948	-0.15072	-0.0001315	0.92603	0.00080797	872.5085866705725	46.543	0.36023	46.432	46.265	46.626	-0.11121					10	6	2	0	0	0	0.072989	1	17734	17734		63.563	9.9873	1	48775000			4606	1061	2467	2494	4511	4511					0.060592666659431416
AVLGKGHQY	9	Unmodified	_AVLGKGHQY_					0	0	0		nc|ENSG00000030066|Q12769|NUP160;ENSG00000030066|ENST00000378460|NUP160	nc|ENSG00000030066|Q12769|NUP160	nc|ENSG00000030066|Q12769|NUP160	MULTI-SECPEP	HCT116MG_D190212_S2	2	486.75372314453125	2	486.766709	971.518865	0.10336	5.031E-05	-1.0453	-0.00050882	-0.94194	-0.00045851	486.7660766604449	21.942	0.26059	21.557	21.427	21.687	-0.38503					10	4	3	0	0	0	0.086606	1	7759	7759		68.081	49.934	1	11196000			4607	965	2468	2495	4512	4512					0.03196606991616591
AVLKRRLLQP	10	Unmodified	_AVLKRRLLQP_					0	0	0		ENSG00000167543|ENST00000301057|TP53I13	ENSG00000167543|ENST00000301057|TP53I13	ENSG00000167543|ENST00000301057|TP53I13	MSMS	HCT116MG_D190212_S1	1	398.6007995605469	3	398.599547	1192.77681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.385	1	19.385	18.885	19.885	0								0	0	0	0.96263	1	6719	6719		1.9064	0.1641	1				4608	4930	2469	2496	4513	4513					0.1881334358465665
AVLSSGLTAAR	11	Unmodified	_AVLSSGLTAAR_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	HCT116MG_D190212_S1	1	523.303466796875	2	523.303655	1044.59276	0.58967	0.00030858	-0.17601	-9.2104E-05	0.41366	0.00021647	523.3033499713955	33.026	0.20798	33.026	32.933	33.141	0					6	3	2	0	0	0	0.29187	1	12226	12226		64.927	13.297	1	8815800			4609	1244	2470	2497	4514	4514					0.07224530363282611
AVMKEHYDDLE	11	Unmodified	_AVMKEHYDDLE_					0	0	0			REV__ENSG00000153790|ENST00000283905|C7orf31	REV__ENSG00000153790|ENST00000283905|C7orf31	MSMS	HCT116MG_D190212_S2	2	675.7732543945312	2	675.305735	1348.59692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.334	1	43.261	42.761	43.761	-0.073376								0	0	0	0.9387	1	16428	16428		12.241	0	1		+		4610	12658	2471	2498	4515	4515					-0.06343792995949116
AVNESNSFQP	10	Unmodified	_AVNESNSFQP_					0	0	0			REV__ENSG00000163596|ENST00000358299|ICA1L	REV__ENSG00000163596|ENST00000358299|ICA1L	MSMS	HCT116MG_D190212_S3	3	546.7535400390625	2	546.751453	1091.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.764	1	26.615	26.115	27.115	-0.14924								0	0	0	0.86471	1	9616	9616		20.454	5.6154	1		+		4611	12934	2472	2499	4516	4516					-0.05373216184102603
AVNFGQYDW	9	Unmodified	_AVNFGQYDW_					0	0	0		nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-3|ALOX5	nc|ENSG00000012779|P09917-3|ALOX5	MULTI-SECPEP	HCT116MG_D190212_S2	2	549.7446899414062	2	550.245806	1098.47706	0.26428	0.00014542	0.44887	0.00024699	0.71314	0.0003924	550.2462822882607	15.034	0.31283	14.707	14.602	14.915	-0.32684					8	5	2	0	0	0	0.26422	1	5002	5002		1.6526	0	1	492260			4612	907	2473	2500	4517	4517					-0.06823993487591906
AVNLAESFNNA	11	Unmodified	_AVNLAESFNNA_					0	0	0		tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	575.2807006835938	2	575.280377	1148.5462	0.4302	0.00024749	0.52491	0.00030197	0.95511	0.00054946	575.2804284526102	25.85	1.2997	25.481	24.614	25.913	-0.36914					67	24	4	0	0	0	0.62391	2	9307	9082;9307		32.786	7.7947	1	37704000			4613	18657	2474	2501	4518;4519	4519					-0.02212954258652644
AVNLAESFNNA	11	Unmodified	_AVNLAESFNNA_					0	0	0		tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	575.2806396484375	2	575.280377	1148.5462	0.57172	0.0003289	0.19157	0.0001102	0.76329	0.00043911	575.2802596074171	25.751	1.9274	25.623	24.349	26.276	-0.12795					106	36	4	0	0	0	0.68267	2	9125	9125;9356		26.268	3.6101	1	47068000			4614	18657	2474	2501	4520;4521	4520					-0.02212954258652644
AVNLAESFNNA	11	Unmodified	_AVNLAESFNNA_					0	0	0		tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	575.2803955078125	2	575.280377	1148.5462	0.48328	0.00027802	0.32749	0.0001884	0.81077	0.00046642	575.2803311360592	25.907	2.2359	25.617	24.372	26.608	-0.29023					116	42	4	0	0	0	0.68267	1	9027	9027		26.268	0	1	45755000			4615	18657	2474	2501	4522	4522					-0.02212954258652644
AVPPALRGP	9	Unmodified	_AVPPALRGP_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-MSMS	HCT116MG_D190212_S1	1	439.265625	2	439.266345	876.518136	0.1455	6.3911E-05	0.036841	1.6183E-05	0.18234	8.0094E-05	439.266118975731	30.49	0.98842	30.49	30.296	31.284	0					27	18	3	0	0	0	0.12335	1	11185	11185		53.576	0	1	7742000	+		4616	14414	2475	2502	4523	4523					0.07493812342568162
AVPPALRGP	9	Unmodified	_AVPPALRGP_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-MSMS	HCT116MG_D190212_S2	2	439.2666931152344	2	439.266345	876.518136	0.075829	3.3309E-05	0.040462	1.7774E-05	0.11629	5.1083E-05	439.26627295492403	30.818	1.9698	30.551	30.404	32.374	-0.26704					48	37	2	0	0	0	0.24973	1	11351	11351		36.044	0	1	47992000	+		4617	14414	2475	2502	4524	4524					0.07493812342568162
AVPPALRGP	9	Unmodified	_AVPPALRGP_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-SECPEP	HCT116MG_D190212_S2	2	439.2065124511719	2	439.266345	876.518136	0.075829	3.3309E-05	0.040462	1.7774E-05	0.11629	5.1083E-05	439.26627295492403	30.818	1.9698	30.551	30.404	32.374	-0.26704					48	37	2	0	0	0	0.15971	1	11397	11397		28.487	0	1	47992000	+		4618	14414	2475	2502	4525	4525					0.07493812342568162
AVPTSGSG	8	Unmodified	_AVPTSGSG_					0	0	0			REV__ZRANB1|p.R128T|1|0.3|ENSG00000019995|chr10:124942876-124942876|G/C|missense_variant	REV__ZRANB1|p.R128T|1|0.3|ENSG00000019995|chr10:124942876-124942876|G/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	675.3370971679688	1	675.330795	674.323519	0.6494	0.00043856	4.1167	0.0027801	4.7661	0.0032187	675.3346618429192	34.362	0.31144	33.976	33.776	34.087	-0.38558					11	5	3	0	0	0	0.73076	1	12546	12546		19.439	0	1	2894300	+		4619	18094	2476	2503	4526	4526					-0.026669835332313596
AVQEKVFEL	9	Unmodified	_AVQEKVFEL_					0	0	0		ENST00000560420.1_1_14:24606925-24607473:+|nuORF;nc|ENSG00000092010|Q06323-3|PSME1;ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-2|PSME1	ENST00000560420.1_1_14:24606925-24607473:+|nuORF	ENST00000560420.1_1_14:24606925-24607473:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	531.7827758789062	2	531.795132	1061.57571	0.73702	0.00039194	-0.39836	-0.00021184	0.33866	0.0001801	532.2964219551658	47.639	0.20734	47.506	47.377	47.584	-0.13281					5	3	2	0	0	0	0.15584	1	18183	18183		34.932	17.819	1	7839800			4620	1570	2477	2504	4527	4527					0.04738609757487211
AVQELERTNYS	11	Unmodified	_AVQELERTNYS_					0	0	0		ENST00000296597.9_1_5:60241069-60368994:+|nuORF	ENST00000296597.9_1_5:60241069-60368994:+|nuORF	ENST00000296597.9_1_5:60241069-60368994:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	655.3233642578125	2	655.322773	1308.63099	0.64541	0.00042295	0.28305	0.00018549	0.92845	0.00060843	655.3229447495936	22.235	0.93749	22.236	21.781	22.719	0.00074387					20	17	2	0	0	0	0.64514	1	7709	7709		38.176	13.185	1	3388800			4621	6985	2478	2505	4528	4528					-0.010976285126844232
AVQELERTNYS	11	Unmodified	_AVQELERTNYS_					0	0	0		ENST00000296597.9_1_5:60241069-60368994:+|nuORF	ENST00000296597.9_1_5:60241069-60368994:+|nuORF	ENST00000296597.9_1_5:60241069-60368994:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	655.323974609375	2	655.322773	1308.63099	0.55351	0.00036273	0.31286	0.00020502	0.86637	0.00056775	655.3230585498513	22.39	0.72711	22.162	21.78	22.507	-0.22777					25	13	3	0	0	0	0.64514	1	7735	7735		31.268	11.906	1	3692100			4622	6985	2478	2505	4529	4529					-0.010976285126844232
AVQTKLIM	8	Unmodified	_AVQTKLIM_					0	0	0		POGZ|p.E1016Rfs*3|1|0.42|ENSG00000143442|chr1:151405989-151405989|C/-|frameshift_variant;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	POGZ|p.E1016Rfs*3|1|0.42|ENSG00000143442|chr1:151405989-151405989|C/-|frameshift_variant	POGZ|p.E1016Rfs*3|1|0.42|ENSG00000143442|chr1:151405989-151405989|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	452.270751953125	2	452.270238	902.525924	0.15677	7.0905E-05	-0.017645	-7.9802E-06	0.13913	6.2924E-05	452.2702757141715	45.652	0.26217	45.652	45.503	45.765	0					7	4	2	0	0	0	0.46892	1	17327	17327		43.858	1.9027	1	8770700			4623	3813	2479	2506	4530	4530					0.07076203547831028
AVRKLHKQWK	10	Unmodified	_AVRKLHKQWK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;SYNE1|p.M2832Nfs*53|1|0.25|ENSG00000131018|chr6:152385831-152385832|-/T|frameshift_variant;SYNE1|p.I2756*|1|0.12|ENSG00000131018|chr6:152387293-152387293|T/-|frameshift_variant;SYNE1|p.N2333Kfs*2|1|0.32|ENSG00000131018|chr6:152401168-152401169|-/T|frameshift_variant;SYNE1|p.S2126Pfs*10|1|0.33|ENSG00000131018|chr6:152409564-152409564|A/-|frameshift_variant;SYNE1|p.S1244Ffs*10|1|0.17|ENSG00000131018|chr6:152444519-152444520|-/G|frameshift_variant;nc|ENSG00000131018|Q8NF91-6|SYNE1;SYNE1|p.F1451Nfs*13|1|0.06|ENSG00000131018|chr6:152433905-152433906|-/TT|frameshift_variant;nc|ENSG00000131018|Q8NF91-5|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MSMS	HCT116MG_D190212_S3	3	431.9351501464844	3	431.934929	1292.78296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.78	1	13.855	13.355	14.355	0.074899								0	0	0	0.97045	1	4392	4392		0.15932	0.064481	1				4624	3120	2480	2507	4531	4531					0.14827861816161203
AVSANYSTGSP	11	Unmodified	_AVSANYSTGSP_					0	0	0		ENST00000368895.2_1_10:124641150-124648192:+|nuORF	ENST00000368895.2_1_10:124641150-124648192:+|nuORF	ENST00000368895.2_1_10:124641150-124648192:+|nuORF	MSMS	HCT116MG_D190212_S3	3	527.3967895507812	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.393	1	34.099	33.599	34.599	-0.29419								0	0	0	0.91433	1	12658	12658		18.146	1.0335	1				4625	7406	2481	2508	4532	4532					-0.04668618558389426
AVSDHISKV	9	Unmodified	_AVSDHISKV_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B;FAM120B|p.Y298Ifs*24|1|0.3|ENSG00000112584|chr6:170318277-170318277|T/-|frameshift_variant	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	HCT116MG_D190212_S2	2	478.2640075683594	2	478.263999	954.513445	0.25169	0.00012037	0.11499	5.4994E-05	0.36667	0.00017537	478.2640269638396	23.708	0.31239	23.325	23.143	23.456	-0.38324					7	5	2	0	0	0	0.037825	1	8488	8488		80.676	47.89	1	11679000			4626	2350	2482	2509	4533	4533					0.03436883409131042
AVSDVLAE	8	Unmodified	_AVSDVLAE_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MSMS	HCT116MG_D190212_S1	1	402.2119445800781	2	402.210901	802.407249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.992	1	17.992	17.492	18.492	0								0	0	0	0.77419	1	6158	6158		24.674	0	1		+		4627	11353	2483	2510	4534	4534					-0.0018587215619163544
AVSEVSVF	8	Unmodified	_AVSEVSVF_					0	0	0		ENST00000523401.5_1_8:67624996-67705900:+|nuORF	ENST00000523401.5_1_8:67624996-67705900:+|nuORF	ENST00000523401.5_1_8:67624996-67705900:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	838.5402221679688	1	837.435261	836.427984	0.77746	0.00065107	-0.060675	-5.0811E-05	0.71678	0.00060026	837.4350633699237	55.334	0.35855	55.146	55.019	55.377	-0.18797					16	6	4	0	0	0	0.77285	1	21298	21298		14.582	1.0738	1	309220000			4628	8571	2484	2511	4535	4535					0.0032271822348093337
AVSIWTTTPD	10	Unmodified	_AVSIWTTTPD_					0	0	0			REV__ENST00000443950.6_1_10:43892036-43892144:-|nuORF	REV__ENST00000443950.6_1_10:43892036-43892144:-|nuORF	MSMS	HCT116MG_D190212_S1	1	545.7408447265625	2	545.774396	1089.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.557	1	19.557	19.057	20.057	0								0	0	0	0.87399	1	6789	6789		19.257	3.1079	1		+		4629	15660	2485	2512	4536	4536					-0.006945710018953832
AVSKEQPPVQN	11	Unmodified	_AVSKEQPPVQN_					0	0	0			REV__CTTNBP2NL|p.R375Q|1|0.45|ENSG00000143079|chr1:112456616-112456616|G/A|missense_variant	REV__CTTNBP2NL|p.R375Q|1|0.45|ENSG00000143079|chr1:112456616-112456616|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	598.8176879882812	2	598.817127	1195.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.769	1	17.769	17.269	18.269	0								0	0	0	0.94538	1	6068	6068		8.7454	0.58988	1		+		4630	10306	2486	2513	4537	4537					0.029715941838276194
AVSLERWAG	9	Unmodified	_AVSLERWAG_					0	0	0		ENST00000474652.1_1_2:73441746-73447117:+|nuORF	ENST00000474652.1_1_2:73441746-73447117:+|nuORF	ENST00000474652.1_1_2:73441746-73447117:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	494.12713623046875	2	494.764166	987.513779	0.41919	0.0002074	-0.68598	-0.0003394	-0.26678	-0.00013199	494.7650113382769	14.998	0.15621	14.998	14.91	15.066	0					8	2	4	0	0	0	0.24622	1	4954	4954		3.9444	0	1	2228300			4631	8190	2487	2514	4538	4538					0.01952303128996391
AVSLMLKHWRL	11	Unmodified	_AVSLMLKHWRL_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S2	2	451.9330139160156	3	451.932309	1352.7751	0.33385	0.00015088	0.7406	0.0003347	1.0744	0.00048558	451.93261217811994	52.219	0.72147	52.032	51.625	52.347	-0.18725					18	13	2	0	0	0	0.74191	1	20084	20084		0.45452	0.046251	1	12407000	+		4632	10913	2488	2515	4539	4539					0.11281966504361662
AVTELGRSI	9	Unmodified	_AVTELGRSI_					0	0	0		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MSMS	HCT116MG_D190212_S1	1	473.2715148925781	2	473.271824	944.529095	0.25912	0.00012264	-0.42174	-0.0001996	-0.16262	-7.6963E-05	473.2715586980297	37.734	0.20881	37.734	37.602	37.811	0					6	3	2	0	0	0	0.15273	1	14135	14135		47.749	3.8904	1	6579500			4633	6511	2489	2516	4540	4540					0.05461169926195453
AVTELGRSI	9	Unmodified	_AVTELGRSI_					0	0	0		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2720947265625	2	473.271824	944.529095	0.095842	4.5359E-05	0.33987	0.00016085	0.43571	0.00020621	473.27192895991135	38.063	0.17876	37.68	37.633	37.812	-0.38282					8	4	2	0	0	0	0.11023	1	13950	13950		56.177	6.6498	1	2461300			4634	6511	2489	2516	4541	4541					0.05461169926195453
AVTGRPGLTYQ	11	Unmodified	_AVTGRPGLTYQ_					0	0	0		ENST00000553853.1_1_14:35297835-35331506:-|nuORF;BAZ1A|p.A74Qfs*12|5|0.35|ENSG00000198604|chr14:34862217-34862217|T/-|frameshift_variant;BAZ1A|p.E200Nfs*25|1|0.39|ENSG00000198604|chr14:34810976-34810976|T/-|frameshift_variant;BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant;BAZ1A|p.E440Gfs*4|1|0.21|ENSG00000198604|chr14:34794793-34794794|-/C|frameshift_variant;BAZ1A|p.F476Sfs*3|1|0.51|ENSG00000198604|chr14:34792858-34792858|A/-|frameshift_variant;BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant;BAZ1A|p.S944Qfs*34|1|0.38|ENSG00000198604|chr14:34775922-34775922|A/-|frameshift_variant;BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant;BAZ1A|p.R1409Kfs*11|1|0.36|ENSG00000198604|chr14:34761774-34761774|C/-|frameshift_variant;BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	ENST00000553853.1_1_14:35297835-35331506:-|nuORF;BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant	BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	581.8146362304688	2	581.814387	1161.61422	0.5587	0.00032506	-0.02539	-1.4772E-05	0.53331	0.00031029	581.8143284571937	29.108	1.6154	28.886	27.9	29.515	-0.22196					93	30	4	0	0	0	0.70662	1	10765	10765		19.362	2.249	1	136790000			4635	8772;252	2490	2517	4542	4542					0.0398791539200829
AVTGRPGLTYQ	11	Unmodified	_AVTGRPGLTYQ_					0	0	0		ENST00000553853.1_1_14:35297835-35331506:-|nuORF;BAZ1A|p.A74Qfs*12|5|0.35|ENSG00000198604|chr14:34862217-34862217|T/-|frameshift_variant;BAZ1A|p.E200Nfs*25|1|0.39|ENSG00000198604|chr14:34810976-34810976|T/-|frameshift_variant;BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant;BAZ1A|p.E440Gfs*4|1|0.21|ENSG00000198604|chr14:34794793-34794794|-/C|frameshift_variant;BAZ1A|p.F476Sfs*3|1|0.51|ENSG00000198604|chr14:34792858-34792858|A/-|frameshift_variant;BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant;BAZ1A|p.S944Qfs*34|1|0.38|ENSG00000198604|chr14:34775922-34775922|A/-|frameshift_variant;BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant;BAZ1A|p.R1409Kfs*11|1|0.36|ENSG00000198604|chr14:34761774-34761774|C/-|frameshift_variant;BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	ENST00000553853.1_1_14:35297835-35331506:-|nuORF;BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant	BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	581.8145141601562	2	581.814387	1161.61422	0.56185	0.00032689	-1.7058	-0.00099244	-1.1439	-0.00066555	581.8142895629321	30.077	0.53	29.829	29.489	30.019	-0.24756					23	9	3	0	0	0	0.69138	1	10997	10997		24.991	6.8446	1	12030000			4636	8772;252	2490	2517	4543	4543					0.0398791539200829
AVTGRPGLTYQ	11	Unmodified	_AVTGRPGLTYQ_					0	0	0		ENST00000553853.1_1_14:35297835-35331506:-|nuORF;BAZ1A|p.A74Qfs*12|5|0.35|ENSG00000198604|chr14:34862217-34862217|T/-|frameshift_variant;BAZ1A|p.E200Nfs*25|1|0.39|ENSG00000198604|chr14:34810976-34810976|T/-|frameshift_variant;BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant;BAZ1A|p.E440Gfs*4|1|0.21|ENSG00000198604|chr14:34794793-34794794|-/C|frameshift_variant;BAZ1A|p.F476Sfs*3|1|0.51|ENSG00000198604|chr14:34792858-34792858|A/-|frameshift_variant;BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant;BAZ1A|p.S944Qfs*34|1|0.38|ENSG00000198604|chr14:34775922-34775922|A/-|frameshift_variant;BAZ1A|p.F1348Hfs*8|1|0.02|ENSG00000198604|chr14:34761959-34761960|-/CAAGTGA|frameshift_variant;BAZ1A|p.R1409Kfs*11|1|0.36|ENSG00000198604|chr14:34761774-34761774|C/-|frameshift_variant;BAZ1A|p.L1455*|1|0.27|ENSG00000198604|chr14:34758726-34758726|A/-|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	ENST00000553853.1_1_14:35297835-35331506:-|nuORF;BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant	BAZ1A|p.I355Nfs*3|1|0.16|ENSG00000198604|chr14:34800288-34800289|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	581.8146362304688	2	581.814387	1161.61422	0.16052	9.3393E-05	0.093214	5.4233E-05	0.25373	0.00014763	581.8143951579108	30.209	0.45817	29.852	29.545	30.003	-0.35711					14	8	2	0	0	0	0.69138	1	10979	10979		24.991	5.629	1	9329600			4637	8772;252	2490	2517	4544	4544					0.0398791539200829
AVTPANDVP	9	Unmodified	_AVTPANDVP_					0	0	0		ENST00000602927.1_1_4:57254011-57254110:+|nuORF	ENST00000602927.1_1_4:57254011-57254110:+|nuORF	ENST00000602927.1_1_4:57254011-57254110:+|nuORF	MSMS	HCT116MG_D190212_S4	4	442.2282409667969	2	442.229625	882.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.808	1	33.423	32.923	33.923	-0.38426								0	0	0	0.76781	1	12320	12320		8.5933	2.2392	1				4638	9100	2491	2518	4545	4545					-0.0012278089056962926
AVTQQPVEEQR	11	Unmodified	_AVTQQPVEEQR_					0	0	0			REV__ENSG00000173535|ENST00000356864|TNFRSF10C	REV__ENSG00000173535|ENST00000356864|TNFRSF10C	MSMS	HCT116MG_D190212_S3	3	429.088623046875	3	428.889603	1283.64698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.749	1	12.812	12.312	13.312	0.06246								0	0	0	0.9613	1	4000	4000		0.40827	0.13925	1		+		4639	13443	2492	2519	4546	4546					0.016500777241844844
AVTWFRDRWRL	11	Unmodified	_AVTWFRDRWRL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MSMS	HCT116MG_D190212_S2	2	502.7650146484375	3	502.608993	1504.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.322	1	50.15	49.65	50.65	-0.1719								0	0	0	0.95581	1	19285	19285		1.3296	0.21989	1		+		4640	11448	2493	2520	4547	4547					0.07294041493923942
AVVARARLI	9	Unmodified	_AVVARARLI_					0	0	0			REV__ENSG00000138083|ENST00000260653|SIX3	REV__ENSG00000138083|ENST00000260653|SIX3	MULTI-MSMS	HCT116MG_D190212_S2	2	485.8001708984375	2	484.821818	967.629084	0.65687	0.00031847	-0.055124	-2.6725E-05	0.60175	0.00029174	484.82152696884714	46.762	0.30876	46.651	46.471	46.78	-0.11121					10	5	3	0	0	0	0.63193	1	17753	17753		9.3474	0	1	36004000	+		4641	12210	2494	2521	4548	4548					0.14397452050650372
AVVGGISYIF	10	Unmodified	_AVVGGISYIF_					0	0	0		ENST00000435287.1_1_6:132272117-132398394:+|nuORF	ENST00000435287.1_1_6:132272117-132398394:+|nuORF	ENST00000435287.1_1_6:132272117-132398394:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	512.9851684570312	2	513.286943	1024.55933	0.18938	9.7206E-05	0.056092	2.8791E-05	0.24547	0.000126	513.7883334530858	54.878	0.20893	54.582	54.452	54.661	-0.29587					5	3	2	0	0	0	0.26542	1	20787	20787		26.884	7.6267	1	2764500			4642	7879	2495	2522	4549	4549					0.048035285913556436
AVVKFKKLLR	10	Unmodified	_AVVKFKKLLR_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MSMS	HCT116MG_D190212_S1	1	401.27587890625	3	401.276293	1200.80705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.409	1	26.409	25.909	26.909	0								0	0	0	0.96404	1	9541	9541		1.5923	0.81575	1		+		4643	12612	2496	2523	4550	4550					0.21467702249833565
AVVRVIRPHKT	11	Unmodified	_AVVRVIRPHKT_					0	0	0			REV__tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	REV__tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	638.3021240234375	2	638.404038	1274.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.547	1	58.547	58.047	59.047	0								0	0	0	0.95686	1	22556	22556		2.7352	1.6637	1		+		4644	17861	2497	2524	4551	4551					0.16711844470569304
AVVRVIRPHKT	11	Unmodified	_AVVRVIRPHKT_					0	0	0			REV__tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	REV__tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	638.4037475585938	2	638.404038	1274.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.994	1	58.994	58.494	59.494	0								0	0	0	0.96141	1	22740	22740		0.35063	0	1		+		4645	17861	2497	2524	4552	4552					0.16711844470569304
AVVYAVPATP	10	Unmodified	_AVVYAVPATP_					0	0	0			REV__ENSG00000205639|ENST00000338315|MFSD2B	REV__ENSG00000205639|ENST00000338315|MFSD2B	MULTI-SECPEP	HCT116MG_D190212_S1	1	493.8034362792969	2	494.279118	986.543683	0.17851	8.8235E-05	-0.41817	-0.00020669	-0.23965	-0.00011846	494.278957384437	42.224	0.31173	42.224	42.019	42.33	0					8	5	2	0	0	0	0.27694	1	15961	15961		15.847	6.4997	1	2880300	+		4646	14228	2498	2525	4553	4553					0.04987242074309961
AVWILEKYYHD	11	Unmodified	_AVWILEKYYHD_					0	0	0		ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	MSMS	HCT116MG_D190212_S4	4	479.57958984375	3	479.578477	1435.7136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.969	1	18.782	18.282	19.282	-0.18674								0	0	0	0.95522	1	6403	6403		3.5927	1.1579	1				4647	4550	2499	2526	4554	4554					0.01317313286085664
AVYDYQGEGS	10	Unmodified	_AVYDYQGEGS_					0	0	0		ENSG00000180353|ENST00000314583|HCLS1;HCLS1|p.V434M|1|0.39|ENSG00000180353|chr3:121632125-121632125|C/T|missense_variant	ENSG00000180353|ENST00000314583|HCLS1	ENSG00000180353|ENST00000314583|HCLS1	MSMS	HCT116MG_D190212_S3	3	544.7322998046875	2	544.730186	1087.44582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.395	1	37.093	36.593	37.593	-0.30137								0	0	0	0.90669	1	13850	13850		14.405	2.7651	1				4648	5594	2500	2527	4555	4555					-0.09440611312334113
AVYEGHVS	8	Unmodified	_AVYEGHVS_					0	0	0		ENSG00000105887|ENST00000393085|MTPN	ENSG00000105887|ENST00000393085|MTPN	ENSG00000105887|ENST00000393085|MTPN	MULTI-MSMS	HCT116MG_D190212_S2	2	431.20867919921875	2	431.208692	860.402832	-0.082466	-3.556E-05	0.14856	6.406E-05	0.066092	2.85E-05	431.20863748232915	21.734	0.20776	21.349	21.219	21.427	-0.38503					6	3	2	0	0	0	0.51336	1	7681	7681		39.957	1.8061	1	14223000			4649	2043	2501	2528	4556	4556					-0.0329533657909451
AVYRRYFHWRR	11	Unmodified	_AVYRRYFHWRR_					0	0	0		ENSG00000196371|ENST00000358752|FUT4;nc|ENSG00000196371|P22083-2|FUT4	ENSG00000196371|ENST00000358752|FUT4	ENSG00000196371|ENST00000358752|FUT4	MSMS	HCT116MG_D190212_S1	1	805.43017578125	2	805.434193	1608.85383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.527	1	42.527	42.027	43.027	0								0	0	0	0.95954	1	16042	16042		1.3295	1.0605	1				4650	6064	2502	2529	4557	4557					0.07375954853660005
AWCASAMRGPT	11	Unmodified	_AWCASAMRGPT_					0	0	0		LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant	LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant	LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	575.7587890625	2	575.760243	1149.50593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.477	1	15.15	14.65	15.65	-0.32684								0	0	0	0.91257	1	5145	5145		18.373	3.1246	1				4651	9305	2503	2530	4558	4558					-0.0628391545442355
AWNWNCWLIPV	11	Unmodified	_AWNWNCWLIPV_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MSMS	HCT116MG_D190212_S1	1	701.3431396484375	2	701.342258	1400.66996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.737	1	57.737	57.237	58.237	0								0	0	0	0.95581	1	22224	22224		3.2813	0.28607	1				4652	1240	2504	2531	4559	4559					-0.014345746920525926
AWRLRRRLLV	10	Unmodified	_AWRLRRRLLV_					0	0	0			REV__ENSG00000154252|ENST00000192314|GAL3ST2	REV__ENSG00000154252|ENST00000192314|GAL3ST2	MSMS	HCT116MG_D190212_S3	3	669.93603515625	2	669.933297	1337.85204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.051	1	56.772	56.272	57.272	-0.27913								0	0	0	0.96911	1	21672	21672		0.45834	0.10771	1		+		4653	12673	2505	2532	4560	4560					0.19662945835716528
AWSKPFPGPFS	11	Unmodified	_AWSKPFPGPFS_					0	0	0			REV__ENST00000456754.6_1_X:47444724-47445414:+|nuORF	REV__ENST00000456754.6_1_X:47444724-47445414:+|nuORF	MSMS	HCT116MG_D190212_S3	3	407.8766174316406	3	407.541475	1219.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.13	1	15.213	14.713	15.713	0.083271								0	0	0	0.95343	1	4927	4927		2.084	0	1		+		4654	15753	2506	2533	4561	4561					0.001577183686549688
AWWTVSWWRRR	11	Unmodified	_AWWTVSWWRRR_					0	0	0			REV__ENST00000380486.3_2_21:43339056-43362335:-|nuORF	REV__ENST00000380486.3_2_21:43339056-43362335:-|nuORF	MSMS	HCT116MG_D190212_S2	2	530.4892578125	3	530.612738	1588.81638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.832	1	48.688	48.188	49.188	-0.1437								0	0	0	0.95954	1	18669	18669		1.3296	0.82369	1		+		4655	15270	2507	2534	4562	4562					0.04552863588037326
AYDKNKNDYS	10	Unmodified	_AYDKNKNDYS_					0	0	0			REV__tr|U7SWF9|U7SWF9_FUSNUPHdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01021PE=4SV=1	REV__tr|U7SWF9|U7SWF9_FUSNUPHdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01021PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	609.2753295898438	2	609.275292	1216.53603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.925	1	26.572	26.072	27.072	-0.35254								0	0	0	0.94107	1	9761	9761		6.7232	0.51738	1		+		4656	17850	2508	2535	4563	4563					-0.06357561983895721
AYDSIYAA	8	Unmodified	_AYDSIYAA_					0	0	0			REV__ENST00000484975.5_1_20:44472013-44472349:-|nuORF	REV__ENST00000484975.5_1_20:44472013-44472349:-|nuORF	MSMS	HCT116MG_D190212_S3	3	437.2017822265625	2	437.203076	872.391599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.742	1	34.445	33.945	34.945	-0.29707								0	0	0	0.8837	1	12799	12799		6.3541	1.1234	1		+		4657	11125	2509	2536	4564	4564					-0.04970158673233982
AYEMFRNERA	10	Unmodified	_AYEMFRNERA_					0	0	0		nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.T1476Hfs*7|1|0.28|ENSG00000076555|chr12:109235620-109235621|-/T|frameshift_variant;ACACB|p.L1398Sfs*26|1|0.18|ENSG00000076555|chr12:109233795-109233795|C/-|frameshift_variant	nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-3|ACACB	MSMS	HCT116MG_D190212_S1	1	643.8028564453125	2	643.800954	1285.58736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.603	1	37.603	37.103	38.103	0								0	0	0	0.90475	1	14054	14054		14.838	4.0143	1				4658	1337	2510	2537	4565	4565					-0.044015164908387305
AYGGLTSPPP	10	Unmodified	_AYGGLTSPPP_					0	0	0		ENST00000551916.1_1_12:62273577-62274426:+|nuORF	ENST00000551916.1_1_12:62273577-62274426:+|nuORF	ENST00000551916.1_1_12:62273577-62274426:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	480.24542236328125	2	480.245275	958.475997	0.27817	0.00013359	-0.30239	-0.00014522	-0.024219	-1.1631E-05	480.2453006615801	26.792	2.343	26.642	26.255	28.598	-0.14924					70	44	2	0	0	0	0.4015	1	9553	9553		42.095	2.1449	1	8890600			4659	8761	2511	2538	4566	4566					-0.0049020785647826415
AYGGLTSPPP	10	Unmodified	_AYGGLTSPPP_					0	0	0		ENST00000551916.1_1_12:62273577-62274426:+|nuORF	ENST00000551916.1_1_12:62273577-62274426:+|nuORF	ENST00000551916.1_1_12:62273577-62274426:+|nuORF	MSMS	HCT116MG_D190212_S4	4	480.2546081542969	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.687	1	27.365	26.865	27.865	-0.32157								0	0	0	0.56552	1	9923	9923		44.407	4.4497	1				4660	8761	2511	2538	4567	4567					-0.0049020785647826415
AYGGLTSPPP	10	Unmodified	_AYGGLTSPPP_					0	0	0		ENST00000551916.1_1_12:62273577-62274426:+|nuORF	ENST00000551916.1_1_12:62273577-62274426:+|nuORF	ENST00000551916.1_1_12:62273577-62274426:+|nuORF	MSMS	HCT116MG_D190212_S4	4	480.24432373046875	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.098	1	27.766	27.266	28.266	-0.33138								0	0	0	0.88269	1	10089	10089		18.135	4.6271	1				4661	8761	2511	2538	4568	4568					-0.0049020785647826415
AYGGLTSPPP	10	Unmodified	_AYGGLTSPPP_					0	0	0		ENST00000551916.1_1_12:62273577-62274426:+|nuORF	ENST00000551916.1_1_12:62273577-62274426:+|nuORF	ENST00000551916.1_1_12:62273577-62274426:+|nuORF	MSMS	HCT116MG_D190212_S4	4	480.2449035644531	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.724	1	28.383	27.883	28.883	-0.34059								0	0	0	0.73139	1	10342	10342		36.044	1.9418	1				4662	8761	2511	2538	4569	4569					-0.0049020785647826415
AYGPGGFG	8	Unmodified	_AYGPGGFG_					0	0	0		ENST00000551454.1_1_10:94449743-94451337:+|nuORF;ENSG00000152804|ENST00000282728|HHEX	ENST00000551454.1_1_10:94449743-94451337:+|nuORF	ENST00000551454.1_1_10:94449743-94451337:+|nuORF	MSMS	HCT116MG_D190212_S2	2	363.1650085449219	2	363.166296	724.31804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.274	1	55.086	54.586	55.586	-0.18797								0	0	0	0.8837	1	21303	21303		2.8892	0.31174	1				4663	4163	2512	2539	4570	4570					-0.05514662325037989
AYKALLTPSI	10	Unmodified	_AYKALLTPSI_					0	0	0			REV__ENST00000433306.1_1_X:25212500-25212860:-|nuORF	REV__ENST00000433306.1_1_X:25212500-25212860:-|nuORF	MSMS	HCT116MG_D190212_S1	1	538.7196655273438	2	538.82115	1075.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.937	1	37.937	37.437	38.437	0								0	0	0	0.94339	1	14189	14189		6.2058	0.47393	1		+		4664	15595	2513	2540	4571	4571					0.09295773171243127
AYKHAKTTE	9	Unmodified	_AYKHAKTTE_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MSMS	HCT116MG_D190212_S4	4	350.18646240234375	3	350.185579	1047.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.048	1	27.718	27.218	28.218	-0.32966								0	0	0	0.7689	1	10069	10069		5.2969	3.2109	1				4665	5702	2514	2541	4572	4572					0.013042684378206104
AYKRIADTLTI	11	Unmodified	_AYKRIADTLTI_					0	0	0			REV__tr|U7SGF0|U7SGF0_FUSNURibosomehibernationpromotingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hpfPE=3SV=1	REV__tr|U7SGF0|U7SGF0_FUSNURibosomehibernationpromotingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hpfPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	632.866943359375	2	632.86662	1263.71869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.879	1	40.501	40.001	41.001	-0.37732								0	0	0	0.95196	1	15013	15013		5.2969	0.39987	1		+		4666	17667	2515	2542	4573	4573					0.09737617148698519
AYLYISPV	8	Unmodified	_AYLYISPV_					0	0	0			REV__ENSG00000255713|ENST00000545221|OR4D2	REV__ENSG00000255713|ENST00000545221|OR4D2	MSMS	HCT116MG_D190212_S1	1	463.2536926269531	2	463.255111	924.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.358	1	47.358	46.858	47.858	0								0	0	0	0.8837	1	17992	17992		10.183	1.5901	1		+		4667	14397	2516	2543	4574	4574					0.030401681542798542
AYMTSSKV	8	Unmodified	_AYMTSSKV_					0	0	0			REV__ENST00000608576.5_1_X:11129126-11129240:-|nuORF	REV__ENST00000608576.5_1_X:11129126-11129240:-|nuORF	MSMS	HCT116MG_D190212_S4	4	443.72100830078125	2	443.720578	885.426604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.412	1	35.026	34.526	35.526	-0.38606								0	0	0	0.8837	1	12969	12969		14.582	1.0738	1		+		4668	16785	2517	2544	4575	4575					-0.02069239136926626
AYNGTDGL	8	Unmodified	_AYNGTDGL_					0	0	0		nc|ENSG00000099260|Q9NP74-3|PALMD;nc|ENSG00000099260|Q9NP74-2|PALMD;ENSG00000099260|ENST00000263174|PALMD	nc|ENSG00000099260|Q9NP74-3|PALMD	nc|ENSG00000099260|Q9NP74-3|PALMD	MSMS	HCT116MG_D190212_S4	4	405.6868591308594	2	405.68505	809.355547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.707	1	28.367	27.867	28.867	-0.34059								0	0	0	0.8837	1	10335	10335		13.508	0.97634	1				4669	1632	2518	2545	4576	4576					-0.05675615850088889
AYPLDMSQY	9	Unmodified	_AYPLDMSQY_					0	0	0		ENSG00000157184|ENST00000371486|CPT2	ENSG00000157184|ENST00000371486|CPT2	ENSG00000157184|ENST00000371486|CPT2	MSMS	HCT116MG_D190212_S2	2	544.2404174804688	2	544.241875	1086.4692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.875	1	26.522	26.022	27.022	-0.35254								0	0	0	0.76077	1	9741	9741		23.148	8.3102	1				4670	4319	2519	2546	4577	4577					-0.07057888799340617
AYPLLLCLL	9	Unmodified	_AYPLLLCLL_					0	0	0		GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant;GPR158|p.K1143Rfs*23|1|0.32|ENSG00000151025|chr10:25599048-25599048|A/-|frameshift_variant;ENSG00000151025|ENST00000376351|GPR158	GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	509.8038330078125	2	509.803914	1017.59328	0.31675	0.00016148	0.18323	9.3409E-05	0.49998	0.00025489	509.8037508404217	47.185	2.1092	46.814	45.875	47.984	-0.37038					157	59	5	0	0	0	0.74258	1	17562	17562		2.3027	0	1	34949000			4671	4100	2520	2547	4578	4578					0.08518233758763927
AYPSHTPVSA	10	Unmodified	_AYPSHTPVSA_					0	0	0			REV__TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant	REV__TP73|p.P335Lfs*10|2|0.29|ENSG00000078900|chr1:3728142-3728142|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	515.2536010742188	2	515.253631	1028.49271	0.27124	0.00013976	0.40953	0.00021101	0.68078	0.00035077	515.2536196033483	41.251	0.21715	40.873	40.756	40.973	-0.37732					11	7	2	0	0	0	0.30623	1	15169	15169		49.933	2.1843	1	15048000	+		4672	10845	2521	2548	4579	4579					-0.020397069705268223
AYRWRERL	8	Unmodified	_AYRWRERL_					0	0	0			REV__ENST00000397054.7_1_1:43232626-43232671:-|nuORF	REV__ENST00000397054.7_1_1:43232626-43232671:-|nuORF	MSMS	HCT116MG_D190212_S3	3	383.8800964355469	3	383.880713	1148.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.184	1	36.883	36.383	37.383	-0.30137								0	0	0	0.8837	1	13765	13765		4.3292	0.45291	1		+		4673	15365	2522	2549	4580	4580					0.051944784141596756
AYSEHYIEYAK	11	Unmodified	_AYSEHYIEYAK_					0	0	0			REV__LCT|p.G928Afs*16|1|0.18|ENSG00000115850|chr2:135809566-135809566|T/-|frameshift_variant	REV__LCT|p.G928Afs*16|1|0.18|ENSG00000115850|chr2:135809566-135809566|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	687.5121459960938	2	687.322242	1372.62993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.475	1	44.39	43.89	44.89	-0.084797								0	0	0	0.92983	1	16892	16892		16.149	0	1		+		4674	11560	2523	2550	4581	4581					-0.04147842881639008
AYSEHYIEYAK	11	Unmodified	_AYSEHYIEYAK_					0	0	0			REV__LCT|p.G928Afs*16|1|0.18|ENSG00000115850|chr2:135809566-135809566|T/-|frameshift_variant	REV__LCT|p.G928Afs*16|1|0.18|ENSG00000115850|chr2:135809566-135809566|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	686.989013671875	2	687.322242	1372.62993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.705	1	44.332	43.832	44.832	-0.37326								0	0	0	0.92983	1	16478	16478		16.149	0	1		+		4675	11560	2523	2550	4582	4582					-0.04147842881639008
AYSRSMTKLAK	11	Unmodified	_AYSRSMTKLAK_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MSMS	HCT116MG_D190212_S1	1	628.3468017578125	2	628.344997	1254.67544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.081	1	29.081	28.581	29.581	0								0	0	0	0.93552	1	10616	10616		13.906	0.86358	1				4676	4315	2524	2551	4583	4583					0.05829104099780125
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	HCT116MG_D190212_S1	1	559.2513427734375	2	559.251089	1116.48762	0.58543	0.0003274	-0.1049	-5.8668E-05	0.48052	0.00026873	559.2509894718353	30.843	0.31223	30.843	30.659	30.971	0					14	5	4	0	0	0	0.0046012	1	11327	11327		141.83	79.254	1	31115000			4677	1124	2525	2552	4584	4584					-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	559.2511596679688	2	559.251089	1116.48762	0.36274	0.00020286	-0.14758	-8.2533E-05	0.21516	0.00012033	559.2509335507403	31.009	0.41342	30.742	30.56	30.974	-0.26704					18	7	4	0	0	0	0.0066233	1	11423	11423		123.45	60.878	1	215450000			4678	1124	2525	2552	4585	4585					-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	1117.4949951171875	1	1117.4949	1116.48762	0.52933	0.00059152	-0.28125	-0.00031429	0.24808	0.00027723	1117.4941640431548	31.009	0.25856	30.742	30.612	30.87	-0.26704					8	4	2	0	0	0	5.2262E-08	1	11447	11447		223.06	144.33	1	41649000			4679	1124	2525	2552	4586	4586					-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	HCT116MG_D190212_S3	3	559.251220703125	2	559.251089	1116.48762	0.31622	0.00017685	0.066491	3.7185E-05	0.38271	0.00021403	559.2509921649157	31.256	0.36583	30.996	30.813	31.179	-0.26071					12	6	3	0	0	0	0.0046012	1	11414	11414		141.83	79.254	1	17489000			4680	1124	2525	2552	4587	4587					-0.06596010833141008
AYVQKLVKVCT	11	Unmodified	_AYVQKLVKVCT_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B;ENSG00000183508|ENST00000369448|TENT5C	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MSMS	HCT116MG_D190212_S2	2	626.3604125976562	2	626.360116	1250.70568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.386	1	33.193	32.693	33.693	-0.19297								0	0	0	0.95023	1	12386	12386		6.2058	2.6093	1				4681	4362	2526	2553	4588	4588					0.09035462764950353
AYYGPSHD	8	Unmodified	_AYYGPSHD_					0	0	0			REV__HOXB4|p.P30S|1|0.19|ENSG00000182742|chr17:48578232-48578232|G/A|missense_variant	REV__HOXB4|p.P30S|1|0.19|ENSG00000182742|chr17:48578232-48578232|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	455.1885681152344	2	455.1905	908.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.634	1	63.395	62.895	63.895	-0.2389								0	0	0	0.8837	1	23989	23989		0.69038	0	1		+		4682	13725	2527	2554	4589	4589					-0.09140213475802739
AYYLRGYFK	9	Unmodified	_AYYLRGYFK_					0	0	0			REV__PIKFYVE|p.C1822G|1|0.41|ENSG00000115020|chr2:208350800-208350800|T/G|missense_variant	REV__PIKFYVE|p.C1822G|1|0.41|ENSG00000115020|chr2:208350800-208350800|T/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	394.210693359375	3	394.209836	1179.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.417	1	16.417	15.917	16.917	0								0	0	0	0.76902	1	5523	5523		2.4985	0.59211	1		+		4683	17421	2528	2555	4590	4590					0.02506022231273164
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S1	1	833.2423706054688	1	832.239102	831.231826	0.90254	0.00075113	0.60696	0.00050514	1.5095	0.0012563	832.2404893736738	1.5765	0.62869	1.5765	1.2985	1.9272	0					95	66	2	0	0	0	0.88026	3	412	412;513;574		0	0	1	619920	+		4684	11100	2529	2556	4591;4592;4593	4591					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S1	1	833.241943359375	1	832.239102	831.231826	0.90243	0.00075104	0.1271	0.00010578	1.0295	0.00085681	832.2403076407014	3.215	0.41903	3.215	3.0966	3.5156	0					63	42	2	0	0	0	0.88026	2	971	971;977		0	0	1	472790	+		4685	11100	2529	2556	4594;4595	4594					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S1	1	832.2420654296875	1	832.239102	831.231826	0.90252	0.00075111	0.6242	0.00051949	1.5267	0.0012706	832.2405257003209	5.5243	0.37546	5.5243	5.2433	5.6187	0					60	40	2	0	0	0	0.88026	1	1595	1595		0	0	1	397430	+		4686	11100	2529	2556	4596	4596					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S1	1	833.2429809570312	1	832.239102	831.231826	0.90241	0.00075102	0.32232	0.00026824	1.2247	0.0010193	832.2404061248407	5.8998	0.54692	5.8998	5.6106	6.1575	0					103	55	2	0	0	0	0.88026	2	1733	1733;1747		0	0	1	418980	+		4687	11100	2529	2556	4597;4598	4597					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S1	1	832.2418823242188	1	832.239102	831.231826	0.90239	0.00075101	0.42738	0.00035568	1.3298	0.0011067	832.2404600948859	6.2571	0.29431	6.2571	6.1575	6.4518	0					43	29	2	0	0	0	0.88026	1	1903	1903		0	0	1	384850	+		4688	11100	2529	2556	4599	4599					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S1	1	833.2421875	1	832.239102	831.231826	0.90238	0.000751	0.21709	0.00018067	1.1195	0.00093166	832.2403558250394	6.6182	0.48496	6.6182	6.4185	6.9034	0					85	48	2	0	0	0	0.88026	2	1970	1970;2061		0	0	1	340620	+		4689	11100	2529	2556	4600;4601	4600					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S1	1	833.2410278320312	1	832.239102	831.231826	0.90247	0.00075107	0.38344	0.00031912	1.2859	0.0010702	832.2403693623064	8.2525	0.6181	8.2525	7.903	8.5211	0					89	63	2	0	0	0	0.88026	1	2449	2449		0	0	1	434880	+		4690	11100	2529	2556	4602	4602					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S1	1	832.2416381835938	1	832.239102	831.231826	0.90238	0.00075099	0.20951	0.00017436	1.1119	0.00092536	832.2403460739915	8.6326	0.73122	8.6326	8.3352	9.0665	0					96	70	2	0	0	0	0.88026	1	2688	2688		0	0	1	452020	+		4691	11100	2529	2556	4603	4603					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S1	1	833.2415161132812	1	832.239102	831.231826	0.90243	0.00075104	0.1548	0.00012883	1.0572	0.00087987	832.2401466947542	9.7962	0.97233	9.7962	9.0384	10.011	0					114	88	2	0	0	0	0.88026	2	2751	2751;3037		0	0	1	403750	+		4692	11100	2529	2556	4604;4605	4604					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-SECPEP	HCT116MG_D190212_S1	1	832.24169921875	1	832.239102	831.231826	0.90243	0.00075104	0.1548	0.00012883	1.0572	0.00087987	832.2401466947542	9.7962	0.97233	9.7962	9.0384	10.011	0					114	88	2	0	0	0	0.33627	1	2849	2849		0	0	1	403750	+		4693	11100	2529	2556	4606	4606					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-SECPEP	HCT116MG_D190212_S1	1	832.2413330078125	1	832.239102	831.231826	0.90262	0.0007512	0.59311	0.00049361	1.4957	0.0012448	832.2403737314528	2.9611	0.49383	2.9611	2.6486	3.1424	0					77	49	2	0	0	0	0.33627	1	821	821		0	0	1	505330	+		4694	11100	2529	2556	4607	4607					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-SECPEP	HCT116MG_D190212_S1	1	832.2412109375	1	832.239102	831.231826	0.90254	0.00075113	0.60696	0.00050514	1.5095	0.0012563	832.2404893736738	1.5765	0.62869	1.5765	1.2985	1.9272	0					95	66	2	0	0	0	0.33627	1	513	513		0	0	1	619920	+		4695	11100	2529	2556	4608	4608					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S3	3	833.2423706054688	1	832.239102	831.231826	0.87354	0.00072699	0.41901	0.00034871	1.2925	0.0010757	832.2405261545787	6.1983	0.66016	6.2127	6.0097	6.6699	0.01438					104	70	2	0	0	0	0.88026	2	1820	1820;1926		0	0	1	554200	+		4696	11100	2529	2556	4609;4610	4609					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S3	3	832.2410888671875	1	832.239102	831.231826	0.87345	0.00072692	0.26911	0.00022396	1.1426	0.00095088	832.2402872181705	8.8054	0.34221	8.826	8.6405	8.9827	0.020599					41	31	2	0	0	0	0.88026	1	2701	2701		0	0	1	438800	+		4697	11100	2529	2556	4611	4611					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S3	3	833.2392578125	1	832.239102	831.231826	0.87341	0.00072689	0.43211	0.00035962	1.3055	0.0010865	832.2405321379628	9.0513	0.81653	9.0774	8.9027	9.7192	0.026101					132	85	2	0	0	0	0.88026	1	2745	2745		0	0	1	482380	+		4698	11100	2529	2556	4612	4612					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S3	3	832.2410888671875	1	832.239102	831.231826	0.87375	0.00072717	0.55596	0.00046269	1.4297	0.0011899	832.2405132538294	11.222	0.5725	11.269	10.777	11.349	0.047391					75	40	2	0	0	0	0.88026	3	3361	3361;3377;3394		0	0	1	538690	+		4699	11100	2529	2556	4613;4614;4615	4613					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S3	3	832.24169921875	1	832.239102	831.231826	0.8733	0.0007268	0.29672	0.00024694	1.17	0.00097374	832.2404251209508	11.669	0.66835	11.724	11.345	12.014	0.055045					67	41	2	0	0	0	0.88026	1	3539	3539		0	0	1	454300	+		4700	11100	2529	2556	4616	4616					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S3	3	832.2422485351562	1	832.239102	831.231826	1.0468	0.00087116	0.33468	0.00027854	1.3815	0.0011497	832.2403227305487	63.414	3.3219	63.199	61.463	64.784	-0.21454					460	237	2	0	0	0	0.88026	10	23759	23759;23921;23963;24140;24151;24304;24308;24461;24471;24617		0	0	1	668570	+		4701	11100	2529	2556	4617;4618;4619;4620;4621;4622;4623;4624;4625;4626	4617					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-SECPEP	HCT116MG_D190212_S3	3	832.2410888671875	1	832.239102	831.231826	0.87341	0.00072689	0.43211	0.00035962	1.3055	0.0010865	832.2405321379628	9.0513	0.81653	9.0774	8.9027	9.7192	0.026101					132	85	2	0	0	0	0.33627	1	2701	2701		0	0	1	482380	+		4702	11100	2529	2556	4627	4627					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-SECPEP	HCT116MG_D190212_S3	3	832.2411499023438	1	832.239102	831.231826	1.0468	0.00087116	0.33468	0.00027854	1.3815	0.0011497	832.2403227305487	63.414	3.3219	63.199	61.463	64.784	-0.21454					460	237	2	0	0	0	0.33627	1	24617	24617		0	0	1	668570	+		4703	11100	2529	2556	4628	4628					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S4	4	833.241455078125	1	832.239102	831.231826	0.12904	0.00010739	0.96469	0.00080285	1.0937	0.00091024	832.2410112426911	0.98745	0.37464	0.72289	0.49127	0.86591	-0.26456					67	39	2	0	0	0	0.88026	1	277	277		0	0	1	434240	+		4704	11100	2529	2556	4629	4629					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S4	4	832.2407836914062	1	832.239102	831.231826	0.12923	0.00010755	0.9994	0.00083174	1.1286	0.00093929	832.240975332872	11.204	0.56094	11.023	10.802	11.363	-0.18135					77	49	2	0	0	0	0.88026	2	3404	3404;3505		0	0	1	494560	+		4705	11100	2529	2556	4630;4631	4630					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	HCT116MG_D190212_S4	4	832.240478515625	1	832.239102	831.231826	0.97675	0.00081289	0.34809	0.00028969	1.3248	0.0011026	832.2402937189573	63.542	3.2507	63.303	61.505	64.755	-0.2389					429	232	2	0	0	0	0.88026	9	23396	23396;23608;23793;23800;23962;24025;24125;24215;24288		0	0	1	530110	+		4706	11100	2529	2556	4632;4633;4634;4635;4636;4637;4638;4639;4640	4632					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-SECPEP	HCT116MG_D190212_S4	4	832.24072265625	1	832.239102	831.231826	0.97675	0.00081289	0.34809	0.00028969	1.3248	0.0011026	832.2402937189573	63.542	3.2507	63.303	61.505	64.755	-0.2389					429	232	2	0	0	0	0.33627	1	23962	23962		0	0	1	530110	+		4707	11100	2529	2556	4641	4641					-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	832.239102	831.231826	0.90241	0.00075102	0.32232	0.00026824	1.2247	0.0010193	832.2404061248407	5.8998	0.54692	5.8998	5.6106	6.1575	0	-0.1075	0.000163	NaN	0	103	55	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	418980	+		4708	11100	2529	2556							-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	832.239102	831.231826	0.90238	0.00075099	0.20951	0.00017436	1.1119	0.00092536	832.2403460739915	8.6326	0.73122	8.6326	8.3352	9.0665	0	-0.096694	-1.4925E-05	NaN	0	96	70	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452020	+		4709	11100	2529	2556							-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	832.239102	831.231826	0.90239	0.00075101	0.42738	0.00035568	1.3298	0.0011067	832.2404600948859	6.2571	0.29431	6.2571	6.1575	6.4518	0	0.022215	5.3336E-06	NaN	0	43	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384850	+		4710	11100	2529	2556							-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	832.239102	831.231826	0.90252	0.00075111	0.6242	0.00051949	1.5267	0.0012706	832.2405257003209	5.5243	0.37546	5.5243	5.2433	5.6187	0	-0.0010639	-0.00019676	NaN	0	60	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397430	+		4711	11100	2529	2556							-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	832.239102	831.231826	0.87345	0.00072692	0.26911	0.00022396	1.1426	0.00095088	832.2402872181705	8.8054	0.34221	8.826	8.6405	8.9827	0.020599	0.096694	3.4674E-05	NaN	0	41	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438800	+		4712	11100	2529	2556							-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	832.239102	831.231826	0.87354	0.00072699	0.41901	0.00034871	1.2925	0.0010757	832.2405261545787	6.1983	0.66016	6.2127	6.0097	6.6699	0.01438	-0.022215	-1.6364E-06	NaN	0	104	70	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	554200	+		4713	11100	2529	2556							-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	832.239102	831.231826	0.87375	0.00072717	0.55596	0.00046269	1.4297	0.0011899	832.2405132538294	11.222	0.5725	11.269	10.777	11.349	0.047391	0.12309	-0.00020318	NaN	0	75	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	538690	+		4714	11100	2529	2556							-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	832.239102	831.231826	0.12676	0.00010549	-0.52488	-0.00043682	-0.39812	-0.00033133	832.2411162307052	6.3716	0.56642	6.1148	5.7187	6.2852	-0.25685	0.1075	-0.00054207	NaN	0	104	55	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562660	+		4715	11100	2529	2556							-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	832.239102	831.231826	0.12923	0.00010755	0.9994	0.00083174	1.1286	0.00093929	832.240975332872	11.204	0.56094	11.023	10.802	11.363	-0.18135	-0.12309	0.00016588	NaN	0	77	49	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494560	+		4716	11100	2529	2556							-0.19054096081242733
CACCCCRA	8	Unmodified	_CACCCCRA_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	832.239102	831.231826	0.12908	0.00010743	1.0012	0.00083327	1.1303	0.0009407	832.2408716839317	5.788	0.54868	5.5264	5.1654	5.7141	-0.26151	0.0010639	0.00011703	NaN	0	95	55	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419850	+		4717	11100	2529	2556							-0.19054096081242733
CACYEESL	8	Unmodified	_CACYEESL_					0	0	0		NCOR2|p.R1501C|1|0.41|ENSG00000196498|chr12:124344810-124344810|G/A|missense_variant	NCOR2|p.R1501C|1|0.41|ENSG00000196498|chr12:124344810-124344810|G/A|missense_variant	NCOR2|p.R1501C|1|0.41|ENSG00000196498|chr12:124344810-124344810|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	459.17193603515625	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.117	1	63.117	62.617	63.617	0								0	0	0	0.8837	1	24384	24384		0.79363	0	1				4718	9689	2530	2557	4642	4642					-0.13085755039321612
CACYEESL	8	Unmodified	_CACYEESL_					0	0	0		NCOR2|p.R1501C|1|0.41|ENSG00000196498|chr12:124344810-124344810|G/A|missense_variant	NCOR2|p.R1501C|1|0.41|ENSG00000196498|chr12:124344810-124344810|G/A|missense_variant	NCOR2|p.R1501C|1|0.41|ENSG00000196498|chr12:124344810-124344810|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	459.1719665527344	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.636	1	62.507	62.007	63.007	-0.12924								0	0	0	0.8837	1	24281	24281		0.79363	0	1				4719	9689	2530	2557	4643	4643					-0.13085755039321612
CAEAGKALIKF	11	Unmodified	_CAEAGKALIKF_					0	0	0		ENSG00000225526|ENST00000564146|MKRN2OS	ENSG00000225526|ENST00000564146|MKRN2OS	ENSG00000225526|ENST00000564146|MKRN2OS	MSMS	HCT116MG_D190212_S1	1	384.5450134277344	3	384.214482	1149.62162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.546	1	27.546	27.046	28.046	0								0	0	0	0.96121	1	10000	10000		0.45452	0.1855	1				4720	6485	2531	2558	4644	4644					0.05278931668067344
CAFDVGWDHLY	11	Unmodified	_CAFDVGWDHLY_					0	0	0			REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__nc|ENSG00000115919|Q16719-2|KYNU	MSMS	HCT116MG_D190212_S1	1	663.2850952148438	2	663.284605	1324.55466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.485	1	31.485	30.985	31.985	0								0	0	0	0.86874	1	11586	11586		24.021	4.7636	1		+		4721	11563	2532	2559	4645	4645					-0.09463723613680486
CAFDVGWDHLY	11	Unmodified	_CAFDVGWDHLY_					0	0	0			REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__nc|ENSG00000115919|Q16719-2|KYNU	MULTI-MSMS	HCT116MG_D190212_S2	2	663.8257446289062	2	663.284605	1324.55466	0.66579	0.00044161	-0.90652	-0.00060128	-0.24073	-0.00015967	663.2842930958936	31.629	0.31164	31.38	31.198	31.51	-0.24883					11	5	3	0	0	0	0.69401	1	11663	11663		24.021	2.4836	1	61769000	+		4722	11563	2532	2559	4646	4646					-0.09463723613680486
CAFDVGWDHLY	11	Unmodified	_CAFDVGWDHLY_					0	0	0			REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__nc|ENSG00000115919|Q16719-2|KYNU	MULTI-SECPEP	HCT116MG_D190212_S2	2	663.8257446289062	2	663.284605	1324.55466	0.66579	0.00044161	-0.90652	-0.00060128	-0.24073	-0.00015967	663.2842930958936	31.629	0.31164	31.38	31.198	31.51	-0.24883					11	5	3	0	0	0	0.3453	1	11663	11663		24.021	5.8742	1	61769000	+		4723	11563	2532	2559	4647	4647					-0.09463723613680486
CAHGGGCAQN	10	Unmodified	_CAHGGGCAQN_					0	0	0			REV__RNF208|p.D81Gfs*20|1|0.34|ENSG00000212864|chr9:137220971-137220972|-/C|frameshift_variant	REV__RNF208|p.D81Gfs*20|1|0.34|ENSG00000212864|chr9:137220971-137220972|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	459.172119140625	2	459.171261	916.327969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.725	1	3.4604	2.9604	3.9604	-0.26456								0	0	0	0.96911	1	1139	1139		0.45834	0.45834	1		+		4724	17476	2533	2560	4648	4648					-0.1335416565362948
CAISEPQFRVF	11	Unmodified	_CAISEPQFRVF_					0	0	0			REV__ENSG00000221978|ENST00000400809|CCNL2;REV__ENST00000505849.5_1_1:1324040-1326969:-|nuORF	REV__ENSG00000221978|ENST00000400809|CCNL2	MSMS	HCT116MG_D190212_S2	2	432.8852233886719	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.504	1	12.207	11.707	12.707	-0.29721								0	0	0	0.9619	1	4089	4089		0.094841	0	1		+		4725	14294;16141	2534	2561	4649	4649					-0.0027487130862482445
CAISEPQFRVF	11	Unmodified	_CAISEPQFRVF_					0	0	0			REV__ENSG00000221978|ENST00000400809|CCNL2;REV__ENST00000505849.5_1_1:1324040-1326969:-|nuORF	REV__ENSG00000221978|ENST00000400809|CCNL2	MSMS	HCT116MG_D190212_S4	4	432.8853759765625	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.38	1	11.199	10.699	11.699	-0.18135								0	0	0	0.9619	1	3513	3513		0.094841	0	1		+		4726	14294;16141	2534	2561	4650	4650					-0.0027487130862482445
CANKLTAF	8	Unmodified	_CANKLTAF_					0	0	0		EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant	EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	434.2229919433594	2	434.223288	866.432024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1557	1	8.9007	8.4007	9.4007	-0.25508								0	0	0	0.8837	1	2861	2861		0.79363	0	1				4727	767	2535	2562	4651	4651					-0.006535155544838744
CCARYSKDRR	10	Unmodified	_CCARYSKDRR_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MSMS	HCT116MG_D190212_S2	2	629.3014526367188	2	629.300598	1256.58664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.441	1	62.305	61.805	62.805	-0.13585								0	0	0	0.96291	1	24202	24202		1.8442	0	1				4728	6460	2536	2563	4652	4652					-0.03138634411561725
CCCCCCFV	8	Unmodified	_CCCCCCFV_					0	0	0			REV__ENST00000318348.8_1_12:110289098-110289272:-|nuORF	REV__ENST00000318348.8_1_12:110289098-110289272:-|nuORF	MSMS	HCT116MG_D190212_S1	1	442.110107421875	2	442.108526	882.202499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.805	1	36.805	36.305	37.305	0								0	0	0	0.8837	1	13731	13731		0	0	1		+		4729	10803	2537	2564	4653	4653					-0.2433137642173051
CCCCCCGTCM	10	Unmodified	_CCCCCCGTCM_					0	0	0			REV__ENST00000379661.7_1_16:57770947-57770980:+|nuORF	REV__ENST00000379661.7_1_16:57770947-57770980:+|nuORF	MSMS	HCT116MG_D190212_S2	2	515.1918334960938	2	515.099518	1028.18448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.775	1	48.631	48.131	49.131	-0.1437								0	0	0	0.97116	1	18645	18645		0	0	1		+		4730	15262	2538	2565	4654	4654					-0.3284820273038349
CCCCCCSH	8	Unmodified	_CCCCCCSH_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	HCT116MG_D190212_S4	4	431.384033203125	2	431.085582	860.156612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.799	1	58.516	58.016	59.016	-0.28305								0	0	0	0.8837	1	22110	22110		0	0	1				4731	7987	2539	2566	4655	4655					-0.2790602160397384
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	HCT116MG_D190212_S1	1	505.374755859375	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.516	1	16.516	16.016	17.016	0								0	0	0	0.97116	1	5563	5563		0	0	1				4732	5113	2540	2567	4656	4656					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	HCT116MG_D190212_S1	1	505.51715087890625	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.575	1	17.575	17.075	18.075	0								0	0	0	0.97116	1	5990	5990		0	0	1				4733	5113	2540	2567	4657	4657					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	HCT116MG_D190212_S3	3	505.31817626953125	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.502	1	53.199	52.699	53.699	-0.30305								0	0	0	0.97116	1	20251	20251		0	0	1				4734	5113	2540	2567	4658	4658					-0.30998394848859334
CCCCCEECGG	10	Unmodified	_CCCCCEECGG_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	HCT116MG_D190212_S4	4	505.143310546875	2	505.104169	1008.19379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.661	1	52.32	51.82	52.82	-0.34023								0	0	0	0.97116	1	19638	19638		0	0	1				4735	5113	2540	2567	4659	4659					-0.30998394848859334
CCCCCSSQPP	10	Unmodified	_CCCCCSSQPP_					0	0	0		ENSG00000180758|ENST00000377411|GPR157	ENSG00000180758|ENST00000377411|GPR157	ENSG00000180758|ENST00000377411|GPR157	MSMS	HCT116MG_D190212_S1	1	515.6486206054688	2	515.649601	1029.28465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.332	1	14.332	13.832	14.832	0								0	0	0	0.9696	1	4682	4682		0.35063	0.35063	1				4736	5608	2541	2568	4660	4660					-0.22882182809075857
CCCCCYPQRC	10	Unmodified	_CCCCCYPQRC_					0	0	0			REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF	REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF	MSMS	HCT116MG_D190212_S4	4	591.1782836914062	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.1826	1	1.9181	1.4181	2.4181	-0.26456								0	0	0	0.96937	1	669	669		0.40072	0.40072	1		+		4737	15243	2542	2569	4661	4661					-0.24150458524218266
CCCCFPCCRGS	11	Unmodified	_CCCCFPCCRGS_					0	0	0		nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA	nc|ENSG00000188877|Q6S8J7-2|POTEA	nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S4	4	591.1780395507812	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.69	1	64.458	63.958	64.958	-0.2319								0	0	0	0.96208	1	24327	24327		0	0	1				4738	9589	2543	2570	4662	4662					-0.24150458524241003
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	HCT116MG_D190212_S3	3	449.4473876953125	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.491	1	27.314	26.814	27.814	-0.17643								0	0	0	0.8837	1	9909	9909		0.69038	0.69038	1				4739	6355	2544	2571	4663	4663					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	HCT116MG_D190212_S3	3	449.2216796875	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.453	1	54.158	53.658	54.658	-0.29587								0	0	0	0.8837	1	20634	20634		0.69038	0.69038	1				4740	6355	2544	2571	4664	4664					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	HCT116MG_D190212_S4	4	449.1142883300781	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.696	1	19.503	19.003	20.003	-0.19367								0	0	0	0.8837	1	6697	6697		0	0	1				4741	6355	2544	2571	4665	4665					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	HCT116MG_D190212_S4	4	449.11407470703125	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.404	1	25.125	24.625	25.625	-0.27958								0	0	0	0.8837	1	9001	9001		0	0	1				4742	6355	2544	2571	4666	4666					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	HCT116MG_D190212_S4	4	449.1131591796875	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.254	1	34.868	34.368	35.368	-0.38606								0	0	0	0.8837	1	12905	12905		0.79363	0.79363	1				4743	6355	2544	2571	4667	4667					-0.24150106180752573
CCCHCCEP	8	Unmodified	_CCCHCCEP_					0	0	0		ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	ENSG00000204887|ENST00000377747|KRTAP1-4	MSMS	HCT116MG_D190212_S4	4	449.11370849609375	2	449.112654	896.210756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.923	1	42.548	42.048	43.048	-0.37493								0	0	0	0.8837	1	15794	15794		0.79363	0.79363	1				4744	6355	2544	2571	4668	4668					-0.24150106180752573
CCCHTCCCSCA	11	Unmodified	_CCCHTCCCSCA_					0	0	0			REV__ENSG00000204323|ENST00000375215|SMIM5	REV__ENSG00000204323|ENST00000375215|SMIM5	MSMS	HCT116MG_D190212_S3	3	379.42449951171875	3	379.424139	1135.25059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.362	1	13.431	12.931	13.931	0.069158								0	0	0	0.96208	1	4232	4232		0	0	1		+		4745	14190	2545	2572	4669	4669					-0.3116267056398101
CCCNCCCGHC	10	Unmodified	_CCCNCCCGHC_					0	0	0		DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant;ENSG00000147570|ENST00000276570|DNAJC5B	DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	350.0742492675781	3	350.073329	1047.19816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.414	1	62.414	61.914	62.914	0								0	0	0	0.97116	1	24100	24100		0	0	1				4746	717	2546	2573	4670	4670					-0.3235520890693806
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	HCT116MG_D190212_S1	1	506.10675048828125	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.73016	1	0.73016	0.23016	1.2302	0								0	0	0	0.97116	1	232	232		0	0	1				4747	7992	2547	2574	4671	4671					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	HCT116MG_D190212_S2	2	506.4202880859375	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0609	1	2.0367	1.5367	2.5367	-0.024288								0	0	0	0.97116	1	668	668		0	0	1				4748	7992	2547	2574	4672	4672					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	HCT116MG_D190212_S4	4	506.1058349609375	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.52909	1	0.26453	-0.23547	0.76453	-0.26456								0	0	0	0.97116	1	165	165		0	0	1				4749	7992	2547	2574	4673	4673					-0.3130114685832268
CCCPCCSCCS	10	Unmodified	_CCCPCCSCCS_					0	0	0		ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000609309.2_3_7:99955758-99956429:+|nuORF;ENST00000452089.5_3_7:99950889-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MSMS	HCT116MG_D190212_S4	4	506.2462463378906	2	506.103115	1010.19168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.949	1	15.785	15.285	16.285	-0.16364								0	0	0	0.97116	1	5183	5183		0	0	1				4750	7992	2547	2574	4674	4674					-0.3130114685832268
CCCSPCCV	8	Unmodified	_CCCSPCCV_					0	0	0		ENSG00000240542|ENST00000398470|KRTAP9-1	ENSG00000240542|ENST00000398470|KRTAP9-1	ENSG00000240542|ENST00000398470|KRTAP9-1	MSMS	HCT116MG_D190212_S4	4	409.11053466796875	2	409.112123	816.209693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2342	1	1.9697	1.4697	2.4697	-0.26456								0	0	0	0.8837	1	687	687		0.79363	0	1				4751	6539	2548	2575	4675	4675					-0.2057632054966234
CCCWCFCCTN	10	Unmodified	_CCCWCFCCTN_					0	0	0			REV__ENSG00000091844|ENST00000206262|RGS17	REV__ENSG00000091844|ENST00000206262|RGS17	MSMS	HCT116MG_D190212_S1	1	593.1580810546875	2	593.159279	1184.304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.834	1	10.834	10.334	11.334	0								0	0	0	0.97116	1	3356	3356		0	0	1		+		4752	11006	2549	2576	4676	4676					-0.2807754978982757
CCDPCATCYC	10	Unmodified	_CCDPCATCYC_					0	0	0		ENSG00000159723|ENST00000290953|AGRP	ENSG00000159723|ENST00000290953|AGRP	ENSG00000159723|ENST00000290953|AGRP	MSMS	HCT116MG_D190212_S3	3	541.148193359375	2	541.149434	1080.28431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.541	1	50.227	49.727	50.727	-0.31381								0	0	0	0.96911	1	19061	19061		0.45834	0.45834	1				4753	4423	2550	2577	4677	4677					-0.25261602528939875
CCFLRLKFFN	10	Unmodified	_CCFLRLKFFN_					0	0	0			REV__NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	REV__NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	430.8879699707031	3	430.887711	1289.6413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.962	1	62.833	62.333	63.333	-0.12924								0	0	0	0.97045	1	24410	24410		0.15932	0.01943	1		+		4754	12432	2551	2578	4678	4678					0.008069844071769694
CCGGAGGGGGS	11	Unmodified	_CCGGAGGGGGS_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2;RUSC2|p.A585Pfs*62|2|0.49|ENSG00000198853|chr9:35548269-35548269|G/-|frameshift_variant	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MSMS	HCT116MG_D190212_S2	2	391.6301574707031	2	391.631437	781.248322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.598	1	10.325	9.8248	10.825	-0.27365								0	0	0	0.96149	1	3363	3363		0.30703	0.30703	1				4755	6287	2552	2579	4679	4679					-0.1510523232760761
CCGGCCGR	8	Unmodified	_CCGGCCGR_					0	0	0			REV__nc|ENSG00000284667|A0A286YF46|SCYGR5	REV__nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S4	4	758.2219848632812	1	758.220081	757.212805	0.99765	0.00075644	-0.69827	-0.00052944	0.29938	0.000227	758.2215020786244	55.731	1.5218	55.419	54.881	56.403	-0.312					51	28	3	0	0	0	0.87635	1	21064	21064		0.69038	0.69038	1	1580300	+		4756	17322	2553	2580	4680	4680					-0.1755130938062166
CCGGCCGR	8	Unmodified	_CCGGCCGR_					0	0	0			REV__nc|ENSG00000284667|A0A286YF46|SCYGR5	REV__nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S4	4	758.2225341796875	1	758.220081	757.212805	1.0463	0.00079331	0.81124	0.0006151	1.8575	0.0014084	758.2215905399963	57.535	1.826	57.24	55.948	57.774	-0.29465					54	34	2	0	0	0	0.87635	1	21360	21360		0.69038	0.69038	1	1445900	+		4757	17322	2553	2580	4681	4681					-0.1755130938062166
CCKKLKILGM	10	Unmodified	_CCKKLKILGM_					0	0	0		PRAMEF15|p.F385Sfs*17|1|0.12|ENSG00000204501|chr1:13321980-13321980|T/-|frameshift_variant;PRAMEF5|p.R417Pfs*5|1|0.29|ENSG00000270601|chr1:13262923-13262924|-/C|frameshift_variant;ENSG00000270601|ENST00000622421|PRAMEF5;ENSG00000232423|ENST00000376189|PRAMEF6;ENSG00000280267|ENST00000624207|PRAMEF26;ENSG00000274764|ENST00000436041|PRAMEF27;ENSG00000243073|ENST00000235349|PRAMEF4;ENSG00000239810|ENST00000619922|PRAMEF11;ENSG00000229571|ENST00000619661|PRAMEF25;ENSG00000204505|ENST00000415919|PRAMEF9;ENSG00000204501|ENST00000376152|PRAMEF15	PRAMEF15|p.F385Sfs*17|1|0.12|ENSG00000204501|chr1:13321980-13321980|T/-|frameshift_variant	PRAMEF15|p.F385Sfs*17|1|0.12|ENSG00000204501|chr1:13321980-13321980|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	568.822021484375	2	568.821258	1135.62796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.702	1	11.702	11.202	12.202	0								0	0	0	0.96911	1	3706	3706		0.45834	0	1				4758	6339	2554	2581	4682	4682					0.06557410303571487
CCLLEHLAERI	11	Unmodified	_CCLLEHLAERI_					0	0	0			REV__nc|ENSG00000149262|Q96HW7-2|INTS4	REV__nc|ENSG00000149262|Q96HW7-2|INTS4	MSMS	HCT116MG_D190212_S1	1	434.0468444824219	3	433.889781	1298.64751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3403	1	1.3403	0.84032	1.8403	0								0	0	0	0.96141	1	409	409		0.094841	0	1		+		4759	12561	2555	2582	4683	4683					0.010134578480347045
CCMVSTLLI	9	Unmodified	_CCMVSTLLI_					0	0	0		tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	982.4752197265625	1	982.477007	981.469731	0.82717	0.00081268	-1.7176	-0.0016876	-0.89048	-0.00087487	982.4752789959405	57.075	0.36309	56.896	56.792	57.155	-0.17904					11	6	3	0	0	0	0.39063	1	22055	22055		23.148	3.7094	1	7030500			4760	18441	2556	2583	4684	4684					-0.021745086754890508
CCNQHDRCY	9	Unmodified	_CCNQHDRCY_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-MSMS	HCT116MG_D190212_S2	2	571.2030029296875	2	571.202235	1140.38992	0.29331	0.00016754	0.59852	0.00034187	0.89183	0.00050942	571.2025202796962	21.53	0.3119	21.145	21.011	21.323	-0.38503					11	5	3	0	0	0	0.74607	1	7606	7606		2.0598	0.21551	1	20606000			4761	2818	2557	2584	4685	4685					-0.17466182296789157
CCPCCVCM	8	Unmodified	_CCPCCVCM_					0	0	0			REV__ENSG00000155890|ENST00000286349|TRIM42;REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	431.2554931640625	2	431.116351	860.218149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.302	1	24.044	23.544	24.544	-0.25816								0	0	0	0.8837	1	8555	8555		0.79363	0	1		+		4762	12711;18014	2558	2585	4686	4686					-0.21755089904684155
CCPSTNFE	8	Unmodified	_CCPSTNFE_					0	0	0			REV__ENST00000395184.5_1_4:86396313-86396598:+|nuORF	REV__ENST00000395184.5_1_4:86396313-86396598:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	900.3230590820312	1	900.322615	899.315339	0.94748	0.00085303	-0.30061	-0.00027065	0.64686	0.00058238	900.3223535134081	46.144	0.36055	46.043	45.863	46.223	-0.1014					11	6	2	0	0	0	0.66231	1	17581	17581		26.884	5.137	1	23035000	+		4763	15345	2559	2586	4687	4687					-0.1383462183652
CCRGCCGG	8	Unmodified	_CCRGCCGG_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S4	4	757.8690185546875	1	758.220081	757.212805	0.96027	0.0007281	0.68048	0.00051596	1.6408	0.0012441	758.2213111549618	36.22	0.94365	35.834	35.491	36.434	-0.38558					23	18	2	0	0	0	0.87576	1	13186	13186		0.79363	0.79363	1	1663700			4764	9667	2560	2587	4688	4688					-0.1755130938062166
CCRQLPPPP	9	Unmodified	_CCRQLPPPP_					0	0	0			REV__ENST00000561463.1_1_15:102312101-102312521:+|nuORF	REV__ENST00000561463.1_1_15:102312101-102312521:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7486267089844	2	505.749147	1009.48374	0.3767	0.00019051	-0.88202	-0.00044608	-0.50532	-0.00025557	505.7486488979891	27.337	0.26024	27.168	27.016	27.276	-0.16933					7	4	2	0	0	0	0.45549	1	9875	9875		19.439	1.0659	1	2182600	+		4765	16493	2561	2588	4689	4689					-0.020620951322030123
CCSCMCDE	8	Unmodified	_CCSCMCDE_					0	0	0		ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	MSMS	HCT116MG_D190212_S1	1	447.100341796875	2	447.101952	892.189352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.203	1	28.203	27.703	28.703	0								0	0	0	0.8837	1	10265	10265		0.69038	0.69038	1				4766	5252	2562	2589	4690	4690					-0.26105536000136453
CCSCMCDEDNA	11	Unmodified	_CCSCMCDEDNA_					0	0	0		ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	MSMS	HCT116MG_D190212_S2	2	597.1544799804688	2	597.155444	1192.29634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.165	1	13.853	13.353	14.353	-0.31202								0	0	0	0.96208	1	4625	4625		0	0	1				4767	5252	2563	2590	4691	4691					-0.2921203057640014
CCSCMCDEDNA	11	Unmodified	_CCSCMCDEDNA_					0	0	0		ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	MSMS	HCT116MG_D190212_S4	4	597.1323852539062	2	597.155444	1192.29634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.328	1	11.147	10.647	11.647	-0.18135								0	0	0	0.96208	1	3495	3495		0	0	1				4768	5252	2563	2590	4692	4692					-0.2921203057640014
CCSCMCDEDNA	11	Unmodified	_CCSCMCDEDNA_					0	0	0		ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	MSMS	HCT116MG_D190212_S4	4	597.1329345703125	2	597.155444	1192.29634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.785	1	11.61	11.11	12.11	-0.17441								0	0	0	0.96208	1	3641	3641		0	0	1				4769	5252	2563	2590	4693	4693					-0.2921203057640014
CCSDTCGE	8	Unmodified	_CCSDTCGE_					0	0	0			REV__ENST00000515867.1_1_3:126668128-126668617:+|nuORF	REV__ENST00000515867.1_1_3:126668128-126668617:+|nuORF	MSMS	HCT116MG_D190212_S2	2	409.1103515625	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4589	1	7.243	6.743	7.743	-0.21581								0	0	0	0.8837	1	2341	2341		0.69038	0	1		+		4770	16211	2564	2591	4694	4694					-0.20663120393351164
CCSPCCCT	8	Unmodified	_CCSPCCCT_					0	0	0			REV__ENSG00000198271|ENST00000343246|KRTAP4-5	REV__ENSG00000198271|ENST00000343246|KRTAP4-5	MSMS	HCT116MG_D190212_S2	2	410.10174560546875	2	410.101755	818.188958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.551	1	11.269	10.769	11.769	-0.28186								0	0	0	0.8837	1	3728	3728		0	0	1		+		4771	14118	2565	2592	4695	4695					-0.22740910929337588
CCTESLVNR	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))C(Carbamidomethyl (C))TESLVNR_	C(1)C(1)TESLVNR		C(96)C(96)TESLVNR		0	2	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB;CON__P02769	ENSG00000163631|ENST00000295897|ALB;CON__P02769	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	569.7525024414062	2	569.752615	1137.49068	0.25309	0.0001442	0.48586	0.00027682	0.73895	0.00042102	569.752694164318	25.085	0.26207	25.085	24.935	25.197	0					7	4	2	0	0	0	0.020353	1	9027	9027		96.111	73.375	1	6351100		+	4772	554;555	2566	2593	4696	4696	0;1				-0.07256827042306213
CCTESLVNR	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))C(Carbamidomethyl (C))TESLVNR_	C(1)C(1)TESLVNR		C(73)C(73)TESLVNR		0	2	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB;CON__P02769	ENSG00000163631|ENST00000295897|ALB;CON__P02769	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	569.7528686523438	2	569.752615	1137.49068	0.54669	0.00031148	-0.52051	-0.00029656	0.026174	1.4913E-05	569.7522652703867	25.232	0.2606	25.126	24.995	25.256	-0.10618					8	4	2	0	0	0	0.053544	1	9009	9009		72.968	46.084	1	8344900		+	4773	554;555	2566	2593	4697	4697	0;1				-0.07256827042306213
CCTESLVNR	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))C(Carbamidomethyl (C))TESLVNR_	C(1)C(1)TESLVNR		C(130)C(130)TESLVNR		0	2	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB;CON__P02769	ENSG00000163631|ENST00000295897|ALB;CON__P02769	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S4	4	569.7523193359375	2	569.752615	1137.49068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.478	1	25.198	24.698	25.698	-0.27958								0	0	0	0.001572	1	9030	9030		126.57	90.439	1			+	4774	554;555	2566	2593	4698	4698	0;1				-0.07256827042306213
CCTTQCCQP	9	Unmodified	_CCTTQCCQP_					0	0	0			REV__ENSG00000171396|ENST00000390661|KRTAP4-4	REV__ENSG00000171396|ENST00000390661|KRTAP4-4	MULTI-MSMS	HCT116MG_D190212_S3	3	986.318603515625	1	986.319855	985.312578	0.7753	0.00076469	-0.36233	-0.00035737	0.41297	0.00040732	986.3192134036924	18.714	0.46844	18.783	18.615	19.083	0.069159					12	8	2	0	0	0	0.74607	1	6393	6393		2.0598	0	1	2355600	+	+	4775	13341	2567	2594	4699	4699					-0.18066536557353174
CCTTQCCQP	9	Unmodified	_CCTTQCCQP_					0	0	0			REV__ENSG00000171396|ENST00000390661|KRTAP4-4	REV__ENSG00000171396|ENST00000390661|KRTAP4-4	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	986.319855	985.312578	0.7753	0.00076469	-0.36233	-0.00035737	0.41297	0.00040732	986.3192134036924	18.714	0.46844	18.783	18.615	19.083	0.069159	0.1166	-0.0003271	NaN	2.0598	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2355600	+	+	4776	13341	2567	2594							-0.18066536557353174
CCTTQCCQP	9	Unmodified	_CCTTQCCQP_					0	0	0			REV__ENSG00000171396|ENST00000390661|KRTAP4-4	REV__ENSG00000171396|ENST00000390661|KRTAP4-4	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	986.319855	985.312578	0.51509	0.00050805	0.063039	6.2177E-05	0.57813	0.00057023	986.3197715757084	18.73	0.41594	18.55	18.355	18.771	-0.18052	-0.1166	9.2452E-05	NaN	2.0598	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1672500	+	+	4777	13341	2567	2594							-0.18066536557353174
CDCCDGTDEY	10	Unmodified	_CDCCDGTDEY_					0	0	0		PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant;nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH	PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	562.1563720703125	2	562.154282	1122.29401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.289	1	45.917	45.417	46.417	-0.37206								0	0	0	0.96911	1	17088	17088		0.45834	0.45834	1				4778	3061	2568	2595	4700	4700					-0.262244197182099
CDECGKSIC	9	Unmodified	_CDECGKSIC_					0	0	0		ZNF155|p.E509Gfs*7|1|0.27|ENSG00000204920|chr19:43997378-43997379|-/G|frameshift_variant;ENSG00000204920|ENST00000270014|ZNF155;nc|ENSG00000204920|Q12901-2|ZNF155	ZNF155|p.E509Gfs*7|1|0.27|ENSG00000204920|chr19:43997378-43997379|-/G|frameshift_variant	ZNF155|p.E509Gfs*7|1|0.27|ENSG00000204920|chr19:43997378-43997379|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	479.1647644042969	2	479.177363	956.340173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9326	1	1.9194	1.4194	2.4194	-0.013221								0	0	0	0.77012	1	625	625		0.45834	0.45834	1				4779	18719	2569	2596	4701	4701					-0.13974310025457726
CDEYESDDED	10	Unmodified	_CDEYESDDED_					0	0	0			REV__ENSG00000041802|ENST00000265245|LSG1	REV__ENSG00000041802|ENST00000265245|LSG1	MSMS	HCT116MG_D190212_S2	2	610.2423095703125	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.079	1	16.729	16.229	17.229	-0.34933								0	0	0	0.96937	1	5790	5790		0.40072	0.40072	1		+		4780	10591	2570	2597	4702	4702					-0.24978377356342207
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	HCT116MG_D190212_S1	1	594.1578979492188	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.157	1	25.157	24.657	25.657	0								0	0	0	0.96208	1	9037	9037		0	0	1				4781	3291	2571	2598	4703	4703					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	HCT116MG_D190212_S1	1	594.1578369140625	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.316	1	59.316	58.816	59.816	0								0	0	0	0.96208	1	22860	22860		0	0	1				4782	3291	2571	2598	4704	4704					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	HCT116MG_D190212_S3	3	594.1587524414062	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.311	1	22.312	21.812	22.812	0.00074577								0	0	0	0.96208	1	7821	7821		0	0	1				4783	3291	2571	2598	4705	4705					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	HCT116MG_D190212_S3	3	594.1060791015625	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.179	1	43.871	43.371	44.371	-0.30759								0	0	0	0.96208	1	16507	16507		0	0	1				4784	3291	2571	2598	4706	4706					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	HCT116MG_D190212_S4	4	593.79443359375	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.153	1	43.779	43.279	44.279	-0.37373								0	0	0	0.96208	1	16256	16256		0	0	1				4785	3291	2571	2598	4707	4707					-0.283037745480442
CDGDNDCEDDS	11	Unmodified	_CDGDNDCEDDS_					0	0	0		ENSG00000134569|ENST00000378623|LRP4;LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	HCT116MG_D190212_S4	4	593.9007568359375	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.568	1	50.211	49.711	50.711	-0.35678								0	0	0	0.96208	1	18792	18792		0	0	1				4786	3291	2571	2598	4708	4708					-0.283037745480442
CDIDECDADYD	11	Unmodified	_CDIDECDADYD_					0	0	0			REV__nc|ENSG00000147133|P21675-25|TAF1	REV__nc|ENSG00000147133|P21675-25|TAF1	MSMS	HCT116MG_D190212_S2	2	426.13714599609375	3	426.137526	1275.39075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.73398	1	0.72772	0.22772	1.2277	-0.00626								0	0	0	0.9619	1	247	247		0.094841	0	1		+		4787	11742	2572	2599	4709	4709					-0.23593153957426694
CDLDDDCGDRS	11	Unmodified	_CDLDDDCGDRS_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant;LRP1|p.D1283Ifs*50|1|0.09|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant;LRP1|p.D1366Rfs*54|1|0.17|ENSG00000123384|chr12:57177143-57177144|-/CA|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	HCT116MG_D190212_S4	4	607.20947265625	2	607.208434	1212.40232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.568	1	36.183	35.683	36.683	-0.38515								0	0	0	0.9598	1	13387	13387		1.1933	0.59184	1				4788	2800	2573	2600	4710	4710					-0.19538912143434572
CDMHWHHL	8	Unmodified	_CDMHWHHL_					0	0	0			REV__ENST00000444380.5_1_2:85828554-85829758:-|nuORF	REV__ENST00000444380.5_1_2:85828554-85829758:-|nuORF	MSMS	HCT116MG_D190212_S1	1	360.14996337890625	3	360.149706	1077.42729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.483	1	14.483	13.983	14.983	0								0	0	0	0.8837	1	4743	4743		0.45834	0.18932	1		+		4789	14810	2574	2601	4711	4711					-0.10832722968893904
CDSEEDCQFS	10	Unmodified	_CDSEEDCQFS_					0	0	0			REV__HSPG2|p.H387Q|1|0.3|ENSG00000142798|chr1:21885369-21885369|G/C|missense_variant	REV__HSPG2|p.H387Q|1|0.3|ENSG00000142798|chr1:21885369-21885369|G/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	388.1276550292969	3	388.126961	1161.35905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.5	1	64.5	64	65	0								0	0	0	0.97045	1	24877	24877		0.15932	0.075971	1		+		4790	16891	2575	2602	4712	4712					-0.21517101920699133
CDSFCDCMGT	10	Unmodified	_CDSFCDCMGT_					0	0	0			REV__ENSG00000145287|ENST00000311507|PLAC8	REV__ENSG00000145287|ENST00000311507|PLAC8	MSMS	HCT116MG_D190212_S2	2	541.1597290039062	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8866	1	4.7679	4.2679	5.2679	-0.11871								0	0	0	0.97045	1	1547	1547		0	0	1		+		4791	12446	2576	2603	4713	4713					-0.23486564002428167
CDTDGDCA	8	Unmodified	_CDTDGDCA_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MSMS	HCT116MG_D190212_S1	1	400.115234375	2	400.115286	798.216019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.025	1	63.025	62.525	63.525	0								0	0	0	0.8837	1	24347	24347		0.79363	0.10326	1		+		4792	12183	2577	2604	4714	4714					-0.19116064521290355
CDTDGDCA	8	Unmodified	_CDTDGDCA_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MSMS	HCT116MG_D190212_S2	2	400.1151123046875	2	400.115286	798.216019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.377	1	62.241	61.741	62.741	-0.13585								0	0	0	0.8837	1	24176	24176		0.79363	0.79363	1		+		4793	12183	2577	2604	4715	4715					-0.19116064521290355
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S1	1	615.1798095703125	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3588	1	2.3588	1.8588	2.8588	0								0	0	0	0.96208	1	714	714		0	0	1		+		4794	11587	2578	2605	4716	4716					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S1	1	615.1809692382812	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0522	1	3.0522	2.5522	3.5522	0								0	0	0	0.96208	1	911	911		0	0	1		+		4795	11587	2578	2605	4717	4717					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S1	1	615.1777954101562	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6799	1	3.6799	3.1799	4.1799	0								0	0	0	0.96208	1	1102	1102		0	0	1		+		4796	11587	2578	2605	4718	4718					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S1	1	615.1793212890625	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9649	1	3.9649	3.4649	4.4649	0								0	0	0	0.96208	1	1190	1190		0	0	1		+		4797	11587	2578	2605	4719	4719					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S1	1	615.1802978515625	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.4906	1	4.4906	3.9906	4.9906	0								0	0	0	0.96208	1	1349	1349		0	0	1		+		4798	11587	2578	2605	4720	4720					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S1	1	615.1797485351562	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8185	1	7.8185	7.3185	8.3185	0								0	0	0	0.96208	1	2363	2363		0	0	1		+		4799	11587	2578	2605	4721	4721					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S1	1	615.1798706054688	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3378	1	8.3378	7.8378	8.8378	0								0	0	0	0.96208	1	2518	2518		0	0	1		+		4800	11587	2578	2605	4722	4722					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S1	1	615.1798095703125	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.083	1	10.083	9.5828	10.583	0								0	0	0	0.96208	1	3078	3078		0	0	1		+		4801	11587	2578	2605	4723	4723					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S1	1	615.1792602539062	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.947	1	64.947	64.447	65.447	0								0	0	0	0.96208	1	25020	25020		0	0	1		+		4802	11587	2578	2605	4724	4724					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1799926757812	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.16868	1	0.16474	-0.33526	0.66474	-0.0039395								0	0	0	0.96208	1	67	67		0	0	1		+		4803	11587	2578	2605	4725	4725					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1796264648438	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.71491	1	0.70865	0.20865	1.2086	-0.00626								0	0	0	0.96208	1	240	240		0	0	1		+		4804	11587	2578	2605	4726	4726					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1799926757812	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2406	1	1.2343	0.73434	1.7343	-0.0062599								0	0	0	0.96208	1	405	405		0	0	1		+		4805	11587	2578	2605	4727	4727					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1804809570312	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7802	1	1.7669	1.2669	2.2669	-0.013221								0	0	0	0.96208	1	580	580		0	0	1		+		4806	11587	2578	2605	4728	4728					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1785278320312	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9798	1	1.9555	1.4555	2.4555	-0.024288								0	0	0	0.96208	1	638	638		0	0	1		+		4807	11587	2578	2605	4729	4729					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1810913085938	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8171	1	2.7767	2.2767	3.2767	-0.040353								0	0	0	0.96208	1	904	904		0	0	1		+		4808	11587	2578	2605	4730	4730					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.179931640625	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0381	1	3.949	3.449	4.449	-0.089082								0	0	0	0.96208	1	1281	1281		0	0	1		+		4809	11587	2578	2605	4731	4731					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1800537109375	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.1275	1	5.0088	4.5088	5.5088	-0.11871								0	0	0	0.96208	1	1617	1617		0	0	1		+		4810	11587	2578	2605	4732	4732					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1777954101562	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6346	1	5.4864	4.9864	5.9864	-0.14816								0	0	0	0.96208	1	1784	1784		0	0	1		+		4811	11587	2578	2605	4733	4733					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1785888671875	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.6989	1	6.5016	6.0016	7.0016	-0.19725								0	0	0	0.96208	1	2108	2108		0	0	1		+		4812	11587	2578	2605	4734	4734					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.5042724609375	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6007	1	7.3849	6.8849	7.8849	-0.21581								0	0	0	0.96208	1	2379	2379		0	0	1		+		4813	11587	2578	2605	4735	4735					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1792602539062	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.7841	1	7.5682	7.0682	8.0682	-0.21581								0	0	0	0.96208	1	2435	2435		0	0	1		+		4814	11587	2578	2605	4736	4736					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1790161132812	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8474	1	8.6034	8.1034	9.1034	-0.24401								0	0	0	0.96208	1	2763	2763		0	0	1		+		4815	11587	2578	2605	4737	4737					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1795043945312	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0955	1	8.8515	8.3515	9.3515	-0.24401								0	0	0	0.96208	1	2844	2844		0	0	1		+		4816	11587	2578	2605	4738	4738					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1797485351562	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3745	1	9.1194	8.6194	9.6194	-0.25508								0	0	0	0.96208	1	2927	2927		0	0	1		+		4817	11587	2578	2605	4739	4739					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1782836914062	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9051	1	9.6404	9.1404	10.14	-0.26472								0	0	0	0.96208	1	3111	3111		0	0	1		+		4818	11587	2578	2605	4740	4740					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1778564453125	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.505	1	13.201	12.701	13.701	-0.30453								0	0	0	0.96208	1	4417	4417		0	0	1		+		4819	11587	2578	2605	4741	4741					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S2	2	615.1803588867188	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.738	1	63.615	63.115	64.115	-0.12264								0	0	0	0.96208	1	24702	24702		0	0	1		+		4820	11587	2578	2605	4742	4742					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.178955078125	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0579	1	1.1189	0.61885	1.6189	0.060905								0	0	0	0.96208	1	328	328		0	0	1		+		4821	11587	2578	2605	4743	4743					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.1806640625	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.4152	1	1.4761	0.97613	1.9761	0.060905								0	0	0	0.96208	1	441	441		0	0	1		+		4822	11587	2578	2605	4744	4744					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.18017578125	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5368	1	1.5977	1.0977	2.0977	0.060905								0	0	0	0.96208	1	472	472		0	0	1		+		4823	11587	2578	2605	4745	4745					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.1817016601562	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9838	1	2.0447	1.5447	2.5447	0.060905								0	0	0	0.96208	1	604	604		0	0	1		+		4824	11587	2578	2605	4746	4746					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.1810302734375	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6172	1	7.6311	7.1311	8.1311	0.013901								0	0	0	0.96208	1	2294	2294		0	0	1		+		4825	11587	2578	2605	4747	4747					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.1812133789062	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3275	1	9.3536	8.8536	9.8536	0.026101								0	0	0	0.96208	1	2817	2817		0	0	1		+		4826	11587	2578	2605	4748	4748					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.1813354492188	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.409	1	10.449	9.949	10.949	0.039975								0	0	0	0.96208	1	3153	3153		0	0	1		+		4827	11587	2578	2605	4749	4749					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.1792602539062	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.955	1	11.002	10.502	11.502	0.04739								0	0	0	0.96208	1	3343	3343		0	0	1		+		4828	11587	2578	2605	4750	4750					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.1812133789062	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.47	1	11.517	11.017	12.017	0.04739								0	0	0	0.96208	1	3522	3522		0	0	1		+		4829	11587	2578	2605	4751	4751					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.1796875	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.107	1	62.883	62.383	63.383	-0.22315								0	0	0	0.96208	1	24101	24101		0	0	1		+		4830	11587	2578	2605	4752	4752					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S3	3	615.1798706054688	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.765	1	64.564	64.064	65.064	-0.2009								0	0	0	0.96141	1	24611	24611		0.35063	0	1		+		4831	11587	2578	2605	4753	4753					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1793212890625	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.4041	1	1.1395	0.63951	1.6395	-0.26456								0	0	0	0.96208	1	432	432		0	0	1		+		4832	11587	2578	2605	4754	4754					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1800537109375	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9387	1	1.6742	1.1742	2.1742	-0.26456								0	0	0	0.96208	1	594	594		0	0	1		+		4833	11587	2578	2605	4755	4755					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1809692382812	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.234	1	2.9694	2.4694	3.4694	-0.26456								0	0	0	0.96208	1	992	992		0	0	1		+		4834	11587	2578	2605	4756	4756					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1798095703125	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3213	1	3.0567	2.5567	3.5567	-0.26456								0	0	0	0.96208	1	1022	1022		0	0	1		+		4835	11587	2578	2605	4757	4757					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1781616210938	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8934	1	4.6292	4.1292	5.1292	-0.26424								0	0	0	0.96208	1	1503	1503		0	0	1		+		4836	11587	2578	2605	4758	4758					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.179443359375	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4942	1	7.2527	6.7527	7.7527	-0.24153								0	0	0	0.96208	1	2294	2294		0	0	1		+		4837	11587	2578	2605	4759	4759					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1801147460938	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5341	1	8.3026	7.8026	8.8026	-0.23148								0	0	0	0.96208	1	2606	2606		0	0	1		+		4838	11587	2578	2605	4760	4760					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1802368164062	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0416	1	8.8208	8.3208	9.3208	-0.22071								0	0	0	0.96208	1	2764	2764		0	0	1		+		4839	11587	2578	2605	4761	4761					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1796264648438	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.643	1	11.469	10.969	11.969	-0.17441								0	0	0	0.96208	1	3596	3596		0	0	1		+		4840	11587	2578	2605	4762	4762					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1787109375	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.242	1	12.073	11.573	12.573	-0.16903								0	0	0	0.96208	1	3791	3791		0	0	1		+		4841	11587	2578	2605	4763	4763					-0.2610833158553305
CECCEHVSCNC	11	Unmodified	_CECCEHVSCNC_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MSMS	HCT116MG_D190212_S4	4	615.1781005859375	2	615.179254	1228.34395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.535	1	13.373	12.873	13.873	-0.16233								0	0	0	0.96208	1	4249	4249		0	0	1		+		4842	11587	2578	2605	4764	4764					-0.2610833158553305
CECDGTMCYGR	11	Unmodified	_CECDGTMCYGR_					0	0	0		FSCN3|p.V82M|1|0.11|ENSG00000106328|chr7:127595406-127595406|G/A|missense_variant	FSCN3|p.V82M|1|0.11|ENSG00000106328|chr7:127595406-127595406|G/A|missense_variant	FSCN3|p.V82M|1|0.11|ENSG00000106328|chr7:127595406-127595406|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	413.141845703125	3	413.141671	1236.40318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.187	1	61.956	61.456	62.456	-0.23129								0	0	0	0.96192	1	23751	23751		0.08335	0.08335	1				4843	9168	2579	2606	4765	4765					-0.20556112299732376
CEDHCCQNPN	10	Unmodified	_CEDHCCQNPN_					0	0	0			REV__ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant	REV__ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	388.1278381347656	3	388.128531	1161.36376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3551	1	7.3551	6.8551	7.8551	0								0	0	0	0.97054	1	2222	2222		0.13989	0.056541	1		+		4844	10699	2580	2607	4766	4766					-0.2104649625894126
CEEDEDFEY	9	Unmodified	_CEEDEDFEY_					0	0	0			REV__ENSG00000166233|ENST00000379887|ARIH1	REV__ENSG00000166233|ENST00000379887|ARIH1	MULTI-MSMS	HCT116MG_D190212_S3	3	1178.38232421875	1	1178.38303	1177.37575	0.49635	0.00058489	-0.24151	-0.00028459	0.25484	0.0003003	1178.3826268897433	18.936	0.67621	19.005	18.667	19.343	0.069159					21	12	2	0	0	0	0.74607	1	6426	6426		2.0598	0.40713	1	6365700	+		4845	13096	2581	2608	4767	4767					-0.20584277763100545
CEEDEDFEY	9	Unmodified	_CEEDEDFEY_					0	0	0			REV__ENSG00000166233|ENST00000379887|ARIH1	REV__ENSG00000166233|ENST00000379887|ARIH1	MULTI-MSMS	HCT116MG_D190212_S4	4	1178.3831787109375	1	1178.38303	1177.37575	0.39297	0.00046307	0.11812	0.00013919	0.51109	0.00060226	1178.3829094810906	18.913	0.62379	18.727	18.455	19.079	-0.18515					27	11	3	0	0	0	0.74607	1	6334	6334		2.0598	0	1	5166500	+		4846	13096	2581	2608	4768	4768					-0.20584277763100545
CEEDEDFEY	9	Unmodified	_CEEDEDFEY_					0	0	0			REV__ENSG00000166233|ENST00000379887|ARIH1	REV__ENSG00000166233|ENST00000379887|ARIH1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1178.38303	1177.37575	0.49635	0.00058489	-0.24151	-0.00028459	0.25484	0.0003003	1178.3826268897433	18.936	0.67621	19.005	18.667	19.343	0.069159	0.13877	-0.00014703	NaN	2.0598	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6365700	+		4847	13096	2581	2608							-0.20584277763100545
CEEDEDFEY	9	Unmodified	_CEEDEDFEY_					0	0	0			REV__ENSG00000166233|ENST00000379887|ARIH1	REV__ENSG00000166233|ENST00000379887|ARIH1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	1178.38303	1177.37575	0.39297	0.00046307	0.11812	0.00013919	0.51109	0.00060226	1178.3829094810906	18.913	0.62379	18.727	18.455	19.079	-0.18515	-0.13877	0.00027675	NaN	2.0598	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5166500	+		4848	13096	2581	2608							-0.20584277763100545
CEEPATHNA	9	Unmodified	_CEEPATHNA_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1;CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	486.19793701171875	2	486.197999	970.381445	0.1162	5.6497E-05	0.098222	4.7755E-05	0.21442	0.00010425	486.1979993314389	16.154	0.26133	15.82	15.689	15.951	-0.33451					7	4	2	0	0	0	0.24534	1	5450	5450		36.506	11.107	1	3709200			4849	3710;1237	2582	2609	4769	4769					-0.1049308967012621
CEIEKWEDQEN	11	Unmodified	_CEIEKWEDQEN_					0	0	0		nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1;nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	MULTI-MSMS	HCT116MG_D190212_S1	1	711.7966918945312	2	711.795731	1421.57691	0.90684	0.00064549	1.2396	0.00088237	2.1465	0.0015279	711.7962921473004	24.595	0.2613	24.595	24.464	24.725	0					7	4	2	0	0	0	0.6946	1	8824	8824		23.801	2.2109	1	9954400			4850	2633	2583	2610	4770	4770					-0.11701588726600676
CELCGESHPY	10	Unmodified	_CELCGESHPY_					0	0	0		MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;ENST00000485061.2_1_13:77667458-77671775:-|nuORF	MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant	MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2203369140625	2	569.220617	1136.42668	0.38655	0.00022003	0.11784	6.7075E-05	0.50439	0.00028711	569.2206336305727	32.41	1.6088	32.18	30.959	32.567	-0.23009					66	30	3	0	0	0	0.85662	1	11729	11729		7.2892	0	1	79557000			4851	818	2584	2611	4771	4771					-0.13607607199219274
CEMCCDCRM	9	Unmodified	_CEMCCDCRM_					0	0	0		PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF	PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant	PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	365.1052551269531	3	365.106916	1092.29892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.515	1	13.21	12.71	13.71	-0.30453								0	0	0	0.76991	1	4420	4420		1.1933	0.41681	1				4852	4233	2585	2612	4772	4772					-0.24353853652451107
CEQNNGGCSEI	11	Unmodified	_CEQNNGGCSEI_					0	0	0		nc|ENSG00000138315|Q8WWZ8-2|OIT3;ENSG00000138315|ENST00000334011|OIT3	nc|ENSG00000138315|Q8WWZ8-2|OIT3	nc|ENSG00000138315|Q8WWZ8-2|OIT3	MSMS	HCT116MG_D190212_S3	3	577.299560546875	2	577.216063	1152.41757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.87	1	51.561	51.061	52.061	-0.30927								0	0	0	0.9465	1	19595	19595		8.1555	0.8663	1				4853	3549	2586	2613	4773	4773					-0.15254000555546554
CESCDGAP	8	Unmodified	_CESCDGAP_					0	0	0			REV__ENST00000486200.1_1_14:51258793-51261178:-|nuORF	REV__ENST00000486200.1_1_14:51258793-51261178:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	781.2492065429688	1	781.249116	780.24184	0.88813	0.00069385	-0.3214	-0.00025109	0.56673	0.00044276	781.2487223507181	25.755	0.31369	25.755	25.666	25.98	0					8	5	2	0	0	0	0.86564	1	9342	9342		2.5775	0.27475	1	6674000	+		4854	15993	2587	2614	4774	4774					-0.15707170279006277
CESCDGAP	8	Unmodified	_CESCDGAP_					0	0	0			REV__ENST00000486200.1_1_14:51258793-51261178:-|nuORF	REV__ENST00000486200.1_1_14:51258793-51261178:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		1	781.249116	780.24184	0.87288	0.00068194	-0.7177	-0.0005607	0.15518	0.00012123	781.2484609002967	26.084	0.41647	25.794	25.568	25.984	-0.29023	0.019357	-0.0002546	NaN	2.5775	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3973800	+		4855	15993	2587	2614							-0.15707170279006277
CEVGDCSDK	9	Unmodified	_CEVGDCSDK_					0	0	0			REV__nc|ENSG00000070404|O95633-2|FSTL3	REV__nc|ENSG00000070404|O95633-2|FSTL3	MSMS	HCT116MG_D190212_S1	1	478.1781311035156	2	478.178417	954.342282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.1965	1	0.1965	-0.3035	0.6965	0								0	0	0	0.76973	1	76	76		1.8442	1.1539	1		+		4856	10754	2588	2615	4775	4775					-0.13671558015994378
CEWRLKRWN	9	Unmodified	_CEWRLKRWN_					0	0	0			REV__ENST00000369046.8_1_6:107097010-107100239:+|nuORF	REV__ENST00000369046.8_1_6:107097010-107100239:+|nuORF	MSMS	HCT116MG_D190212_S1	1	430.8868103027344	3	430.888991	1289.64514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.066	1	12.066	11.566	12.566	0								0	0	0	0.77018	1	3847	3847		0.26902	0.1097	1		+		4857	15140	2589	2616	4776	4776					0.01190790225246019
CEWRLKRWN	9	Unmodified	_CEWRLKRWN_					0	0	0			REV__ENST00000369046.8_1_6:107097010-107100239:+|nuORF	REV__ENST00000369046.8_1_6:107097010-107100239:+|nuORF	MSMS	HCT116MG_D190212_S1	1	430.8876647949219	3	430.888991	1289.64514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.618	1	12.618	12.118	13.118	0								0	0	0	0.77018	1	4059	4059		0.26902	0.1097	1		+		4858	15140	2589	2616	4777	4777					0.01190790225246019
CFDKEVAPT	9	Unmodified	_CFDKEVAPT_					0	0	0			REV__ENST00000585964.1_1_19:9806866-9811207:-|nuORF	REV__ENST00000585964.1_1_19:9806866-9811207:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1009.4679565429688	1	1009.46591	1008.45863	0.7761	0.00078345	0.012781	1.2902E-05	0.78889	0.00079635	1009.4661980973739	43.361	0.31237	43.361	43.16	43.472	0					9	5	2	0	0	0	0.19461	1	16422	16422		41.84	12.758	1	8414700	+		4859	16651	2590	2617	4778	4778					-0.04525871453790842
CFDKEVAPT	9	Unmodified	_CFDKEVAPT_					0	0	0			REV__ENST00000585964.1_1_19:9806866-9811207:-|nuORF	REV__ENST00000585964.1_1_19:9806866-9811207:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	504.7716064453125	2	505.236593	1008.45863	0.37715	0.00019055	0.13224	6.6811E-05	0.50938	0.00025736	505.23680583928524	43.684	0.31295	43.378	43.188	43.5	-0.30616					8	5	2	0	0	0	0.22899	1	16296	16296		24.021	3.5669	1	1500700	+		4860	16651	2590	2617	4779	4779					-0.04525871453790842
CFDWTTRKVF	10	Unmodified	_CFDWTTRKVF_					0	0	0			REV__nc|ENSG00000183873|Q14524-5|SCN5A	REV__nc|ENSG00000183873|Q14524-5|SCN5A	MSMS	HCT116MG_D190212_S1	1	434.9708557128906	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.278	1	13.278	12.778	13.778	0								0	0	0	0.96937	1	4306	4306		0.13989	0.04505	1		+		4861	13784	2591	2618	4780	4780					-0.01606853963062349
CFHASHPTN	9	Unmodified	_CFHASHPTN_					0	0	0			REV__ENST00000409419.5_1_19:40854624-40872398:+|nuORF	REV__ENST00000409419.5_1_19:40854624-40872398:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	506.7147521972656	2	507.216526	1012.4185	0.37141	0.00018838	-0.89953	-0.00045626	-0.52812	-0.00026787	507.2160373350903	22.663	0.2604	22.663	22.481	22.741	0					6	4	2	0	0	0	0.25004	1	8047	8047		6.7232	0	1	5776300	+		4862	15435	2592	2619	4781	4781					-0.08721373333708016
CFLKERFIHFL	11	Unmodified	_CFLKERFIHFL_					0	0	0		ENST00000454309.6_1_3:192126033-192126612:-|nuORF	ENST00000454309.6_1_3:192126033-192126612:-|nuORF	ENST00000454309.6_1_3:192126033-192126612:-|nuORF	MSMS	HCT116MG_D190212_S1	1	484.9325866699219	3	484.932197	1451.77476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.416	1	53.416	52.916	53.916	0								0	0	0	0.95705	1	20456	20456		2.6312	0	1				4863	8011	2593	2620	4782	4782					0.06694546784524391
CFNDECCCF	9	Unmodified	_CFNDECCCF_					0	0	0			REV__ACVR2B|p.G106D|1|0.07|ENSG00000114739|chr3:38477917-38477917|G/A|missense_variant	REV__ACVR2B|p.G106D|1|0.07|ENSG00000114739|chr3:38477917-38477917|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	542.1549072265625	2	542.155573	1082.29659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2919	1	1.2856	0.78561	1.7856	-0.0062599								0	0	0	0.77025	1	422	422		0	0	1		+		4864	9844	2594	2621	4783	4783					-0.24126242794272912
CFPLISLIL	9	Unmodified	_CFPLISLIL_					0	0	0		PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant;nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1	PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant	PGAP1|p.K723Yfs*11|1|0.11|ENSG00000197121|chr2:196846002-196846003|-/CTATGTGTTTAAGGTAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	509.8040771484375	2	509.803914	1017.59328	0.48279	0.00024613	-0.12574	-6.4102E-05	0.35705	0.00018202	509.80375680977505	46.274	1.7665	46.274	45.295	47.062	0					96	33	3	0	0	0	0.71345	1	17758	17758		4.3292	0.73274	1	212600000			4865	6121	2595	2622	4784	4784					0.08518233758786664
CFQVYEQGKM	10	Unmodified	_CFQVYEQGKM_					0	0	0		ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	MSMS	HCT116MG_D190212_S1	1	616.7742919921875	2	616.775559	1231.53657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.11	1	36.11	35.61	36.61	0								0	0	0	0.88261	1	13454	13454		18.146	2.2992	1				4866	2448	2596	2623	4785	4785					-0.06994181860068238
CGAHCGGGGG	10	Unmodified	_CGAHCGGGGG_					0	0	0		ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	775.2615356445312	1	775.261018	774.253742	0.89893	0.00069691	0.32759	0.00025397	1.2265	0.00095087	775.2611151345204	23.033	0.26019	22.648	22.518	22.778	-0.3852					6	4	2	0	0	0	0.89438	1	8217	8217		0	0	1	8763300			4867	7488	2597	2624	4786	4786					-0.14241508745124065
CGGKRGTL	8	Unmodified	_CGGKRGTL_					0	0	0			REV__nc|ENSG00000131828|P08559-3|PDHA1	REV__nc|ENSG00000131828|P08559-3|PDHA1	MSMS	HCT116MG_D190212_S4	4	396.2127685546875	2	396.213255	790.411957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.355	1	34.969	34.469	35.469	-0.38606								0	0	0	0.8837	1	12946	12946		5.7604	0	1		+		4868	11972	2598	2625	4787	4787					0.008367335055822878
CGGSKGGY	8	Unmodified	_CGGSKGGY_					0	0	0		ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	MULTI-MSMS	HCT116MG_D190212_S1	1	364.6552429199219	2	364.655238	727.295924	-0.03248	-1.1844E-05	0.5641	0.0002057	0.53162	0.00019386	364.65532865696156	34.623	0.25951	34.623	34.441	34.701	0					8	4	2	0	0	0	0.81821	1	12859	12859		9.3474	0	1	15433000			4869	6543	2599	2626	4788	4788					-0.07863210065124804
CGMHPCGC	8	Unmodified	_CGMHPCGC_					0	0	0			REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	REV__ENST00000594950.5_1_19:58865190-58865298:+|nuORF	MSMS	HCT116MG_D190212_S3	3	404.1244812011719	2	404.123879	806.233206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.574	1	62.351	61.851	62.851	-0.22315								0	0	0	0.8837	1	23904	23904		0	0	1		+		4870	16715	2600	2627	4789	4789					-0.177661387208218
CGNDNDDPC	9	Unmodified	_CGNDNDDPC_					0	0	0		ENST00000469537.1_1_1:156169610-156169919:+|nuORF;ENST00000423538.6_1_1:156163924-156169919:+|nuORF	ENST00000469537.1_1_1:156169610-156169919:+|nuORF	ENST00000469537.1_1_1:156169610-156169919:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	952.2769165039062	1	952.277122	951.269845	0.84065	0.00080053	-0.12409	-0.00011817	0.71656	0.00068237	952.2767855102975	24.839	0.31406	24.839	24.673	24.987	0					9	5	2	0	0	0	0.74607	1	8923	8923		2.0598	0	1	4364700			4871	7802	2601	2628	4790	4790					-0.20773892089573565
CGNGSSKV	8	Unmodified	_CGNGSSKV_					0	0	0		GCFC2|p.V549Sfs*42|1|0.27|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant;GCFC2|p.W710Mfs*3|1|0.22|ENSG00000005436|chr2:75666029-75666030|-/T|frameshift_variant;nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2;ENST00000470197.5_1_2:75917809-75928342:-|nuORF	GCFC2|p.V549Sfs*42|1|0.27|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant	GCFC2|p.V549Sfs*42|1|0.27|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	376.8773193359375	2	376.173795	750.333038	-0.12337	-4.6409E-05	1.407	0.00052928	1.2836	0.00048287	376.17443623852887	27.663	0.15504	27.321	27.243	27.398	-0.34201					4	2	2	0	0	0	0.32676	1	10045	10045		2.0598	0	1	9599900			4872	815	2602	2629	4791	4791					-0.052115385193587827
CGNLMHLMMCC	11	Unmodified	_CGNLMHLMMCC_					0	0	0			REV__ENST00000586644.1_1_17:43348295-43350966:-|nuORF	REV__ENST00000586644.1_1_17:43348295-43350966:-|nuORF	MSMS	HCT116MG_D190212_S4	4	628.2327880859375	2	628.232778	1254.451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.85	1	13.688	13.188	14.188	-0.16233								0	0	0	0.96208	1	4361	4361		0	0	1		+		4873	10486	2603	2630	4792	4792					-0.1660445290485768
CGPRGGGGS	9	Unmodified	_CGPRGGGGS_					0	0	0			REV__FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant	REV__FBXO46|p.P424Rfs*34|1|0.44|ENSG00000177051|chr19:45712225-45712225|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	747.320068359375	1	747.320248	746.312971	1.1061	0.00082662	-0.84446	-0.00063108	0.26165	0.00019554	747.3194737993161	32.824	0.46723	32.612	32.377	32.845	-0.21135					17	8	3	0	0	0	0.71345	1	12137	12137		4.3292	1.44	1	119460000	+		4874	13561	2604	2631	4793	4793					-0.07033289459297976
CHELCCTF	8	Unmodified	_CHELCCTF_					0	0	0			REV__ENST00000298569.8_1_5:175773184-175773430:-|nuORF	REV__ENST00000298569.8_1_5:175773184-175773430:-|nuORF	MSMS	HCT116MG_D190212_S3	3	478.17791748046875	2	478.177166	954.339779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.309	1	63.094	62.594	63.594	-0.21454								0	0	0	0.8837	1	24171	24171		0.69038	0	1		+		4875	14771	2605	2632	4794	4794					-0.13921684954641478
CHGCDEPPCMP	11	Unmodified	_CHGCDEPPCMP_					0	0	0		ENST00000451147.5_1_2:85828554-85828698:-|nuORF;ENST00000425160.1_1_2:85828206-85828698:-|nuORF;ENST00000444380.5_1_2:85828554-85829758:-|nuORF;ENST00000306353.7_2_2:85828206-85829758:-|nuORF;ENST00000455852.1_1_2:85828554-85830202:-|nuORF	ENST00000451147.5_1_2:85828554-85828698:-|nuORF	ENST00000451147.5_1_2:85828554-85828698:-|nuORF	MSMS	HCT116MG_D190212_S4	4	396.80133056640625	3	396.802878	1187.38681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.547	1	49.185	48.685	49.685	-0.36213								0	0	0	0.96111	1	18382	18382		0.50596	0.051438	1				4876	7027	2606	2633	4795	4795					-0.19939193465825156
CHGTSGSC	8	Unmodified	_CHGTSGSC_					0	0	0		ENSG00000135925|ENST00000258411|WNT10A;ENSG00000169884|ENST00000301061|WNT10B	ENSG00000135925|ENST00000258411|WNT10A;ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	MSMS	HCT116MG_D190212_S1	1	376.12933349609375	2	376.128531	750.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.916	1	62.916	62.416	63.416	0								0	0	0	0.8837	1	24303	24303		0.79363	0.79363	1				4877	5097;3382	2607	2634	4796	4796					-0.14260330839283597
CHKRYLNEVLT	11	Unmodified	_CHKRYLNEVLT_					0	0	0			REV__ENSG00000118017|ENST00000236709|A4GNT	REV__ENSG00000118017|ENST00000236709|A4GNT	MSMS	HCT116MG_D190212_S1	1	688.3599853515625	2	688.361179	1374.7078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.416	1	48.416	47.916	48.916	0								0	0	0	0.95196	1	18422	18422		5.2969	0	1		+		4878	11627	2608	2635	4797	4797					0.0354389150274983
CHNELMDEY	9	Unmodified	_CHNELMDEY_					0	0	0			REV__ENST00000430308.1_1_13:22105114-22105396:+|nuORF	REV__ENST00000430308.1_1_13:22105114-22105396:+|nuORF	MSMS	HCT116MG_D190212_S3	3	385.1854248046875	3	385.147808	1152.42159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.384	1	58.114	57.614	58.614	-0.26932								0	0	0	0.77008	1	22209	22209		0.26902	0.033176	1		+		4879	15578	2609	2636	4798	4798					-0.14851911061850842
CHPERKWKV	9	Unmodified	_CHPERKWKV_					0	0	0		nc|ENSG00000198105|Q8NDW4-2|ZNF248;ZNF248|p.R196Kfs*5|1|0.13|ENSG00000198105|chr10:37832768-37832769|-/T|frameshift_variant;ENSG00000198105|ENST00000395867|ZNF248	nc|ENSG00000198105|Q8NDW4-2|ZNF248	nc|ENSG00000198105|Q8NDW4-2|ZNF248	MSMS	HCT116MG_D190212_S1	1	394.8775939941406	3	394.878204	1181.61278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.035	1	9.035	8.535	9.535	0								0	0	0	0.77018	1	2734	2734		0.26902	0	1				4880	6205	2610	2637	4799	4799					0.02924002822237526
CHTANIQTLIP	11	Unmodified	_CHTANIQTLIP_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MSMS	HCT116MG_D190212_S1	1	605.8137817382812	2	605.816073	1209.61759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.188	1	49.188	48.688	49.688	0								0	0	0	0.95273	1	18736	18736		4.897	1.3005	1				4881	3503	2611	2638	4800	4800					0.021168421743368526
CHWLWSKETL	10	Unmodified	_CHWLWSKETL_					0	0	0			REV__ENST00000577083.1_1_16:4491378-4492529:+|nuORF	REV__ENST00000577083.1_1_16:4491378-4492529:+|nuORF	MSMS	HCT116MG_D190212_S3	3	435.3260192871094	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.167	1	11.214	10.714	11.714	0.04739								0	0	0	0.96911	1	3415	3415		0.15932	0.01943	1		+		4882	16609	2612	2639	4801	4801					-0.016068539630396117
CIEDTLGTMH	10	Unmodified	_CIEDTLGTMH_					0	0	0			REV__ENSG00000184571|ENST00000616349|PIWIL3	REV__ENSG00000184571|ENST00000616349|PIWIL3	MSMS	HCT116MG_D190212_S4	4	560.2467651367188	2	560.244092	1118.47363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.803	1	47.434	46.934	47.934	-0.36907								0	0	0	0.92272	1	17683	17683		10.824	3.5347	1		+		4883	13806	2613	2640	4802	4802					-0.08086747648076198
CIKWRRRRRRR	11	Unmodified	_CIKWRRRRRRR_					0	0	0		ENST00000303961.8_1_19:41306371-41306464:+|nuORF	ENST00000303961.8_1_19:41306371-41306464:+|nuORF	ENST00000303961.8_1_19:41306371-41306464:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	547.2979125976562	3	548.002565	1640.98587	0.61771	0.00033851	-1.2056	-0.00066065	-0.58785	-0.00032214	548.3359316345797	54.153	0.25634	54.153	53.975	54.231	0					6	4	2	0	0	0	0.36631	1	20739	20739		0	0	1	7107100			4884	7017	2614	2641	4803	4803					0.19101281389612268
CISIEGDSYFA	11	Unmodified	_CISIEGDSYFA_					0	0	0			REV__ENST00000425818.2_1_15:66679685-66737158:+|nuORF	REV__ENST00000425818.2_1_15:66679685-66737158:+|nuORF	MSMS	HCT116MG_D190212_S2	2	602.7608032226562	2	602.763171	1203.51179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.074	1	16.725	16.225	17.225	-0.34933								0	0	0	0.93717	1	5788	5788		13.042	3.6593	1		+		4885	11849	2615	2642	4804	4804					-0.08182538461778677
CITATPTS	8	Unmodified	_CITATPTS_					0	0	0		ENST00000538721.6_2_17:79867404-79869149:-|nuORF	ENST00000538721.6_2_17:79867404-79869149:-|nuORF	ENST00000538721.6_2_17:79867404-79869149:-|nuORF	MSMS	HCT116MG_D190212_S4	4	397.1911926269531	2	397.191654	792.368755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.236	1	56.936	56.436	57.436	-0.3004								0	0	0	0.8837	1	21478	21478		5.2307	2.6532	1				4886	8677	2616	2643	4805	4805					-0.035735010623625385
CKCLFSREGPT	11	Unmodified	_CKCLFSREGPT_					0	0	0			REV__ENST00000475659.1_1_1:197237491-197326220:+|nuORF	REV__ENST00000475659.1_1_1:197237491-197326220:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	621.2965698242188	2	620.794283	1239.57401	0.3831	0.00023782	-0.13042	-8.0961E-05	0.25268	0.00015686	620.7937147914525	19.322	0.6247	19.382	19.178	19.802	0.05983					19	11	2	0	0	0	0.71498	1	6604	6604		26.268	0	1	2688200	+		4887	10291	2617	2644	4806	4806					-0.036190905944522456
CKHARRVHV	9	Unmodified	_CKHARRVHV_					0	0	0		ENST00000204005.13_1_19:41112319-41113358:+|nuORF	ENST00000204005.13_1_19:41112319-41113358:+|nuORF	ENST00000204005.13_1_19:41112319-41113358:+|nuORF	MSMS	HCT116MG_D190212_S1	1	369.2115173339844	3	369.210176	1104.6087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.45	1	40.45	39.95	40.95	0								0	0	0	0.76995	1	15204	15204		1.0715	0.3738	1				4888	6724	2618	2645	4807	4807					0.06057958119185969
CKILVFVAV	9	Unmodified	_CKILVFVAV_					0	0	0		nc|ENSG00000145979|Q9P0N9-3|TBC1D7;nc|ENSG00000145979|Q9P0N9-4|TBC1D7;nc|ENSG00000145979|Q9P0N9-2|TBC1D7;ENSG00000145979|ENST00000379300|TBC1D7;ENST00000607658.5_1_6:13306617-13307865:-|nuORF	nc|ENSG00000145979|Q9P0N9-3|TBC1D7	nc|ENSG00000145979|Q9P0N9-3|TBC1D7	MULTI-MSMS	HCT116MG_D190212_S2	2	496.94671630859375	2	496.304081	990.59361	0.38383	0.0001905	-0.00076285	-3.7861E-07	0.38307	0.00019012	496.3039977621679	52.686	1.806	52.499	51.832	53.638	-0.18726					45	34	3	0	0	0	0.70732	1	20212	20212		4.756	4.756	1	13621000			4889	9491	2619	2646	4808	4808					0.09793653478629949
CKLIARVL	8	Unmodified	_CKLIARVL_					0	0	0			REV__nc|ENSG00000094880|Q9UJX2-2|CDC23	REV__nc|ENSG00000094880|Q9UJX2-2|CDC23	MSMS	HCT116MG_D190212_S4	4	458.2964782714844	2	458.294048	914.573543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.95	1	40.572	40.072	41.072	-0.37732								0	0	0	0.8837	1	15042	15042		2.5775	0.27475	1		+		4890	17092	2620	2647	4809	4809					0.11283902538662005
CKLLRLDDLFI	11	Unmodified	_CKLLRLDDLFI_					0	0	0		nc|ENSG00000076356|O75051-2|PLXNA2;ENSG00000076356|ENST00000367033|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	MULTI-MSMS	HCT116MG_D190212_S1	1	675.3775024414062	2	674.886498	1347.75844	0.71434	0.0004821	-0.053804	-3.6311E-05	0.66054	0.00044579	674.8862665524125	52.099	0.72992	52.099	51.704	52.434	0					22	13	3	0	0	0	0.74191	1	19894	19894		2.7352	0	1	27783000			4891	1335	2621	2648	4810	4810					0.09847420827759379
CKRELEEW	8	Unmodified	_CKRELEEW_					0	0	0			REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	MSMS	HCT116MG_D190212_S3	3	364.4966735839844	3	364.842936	1091.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.125	1	19.194	18.694	19.694	0.069159								0	0	0	0.8837	1	6539	6539		5.7319	1.5423	1		+		4892	17567	2622	2649	4811	4811					-0.035113778139020724
CKVPRGPV	8	Unmodified	_CKVPRGPV_					0	0	0			REV__ENST00000432802.6_1_20:25028753-25038655:-|nuORF	REV__ENST00000432802.6_1_20:25028753-25038655:-|nuORF	MSMS	HCT116MG_D190212_S3	3	428.2489929199219	2	428.247098	854.479642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.332	1	27.163	26.663	27.663	-0.16933								0	0	0	0.8837	1	9845	9845		9.3474	0.75416	1		+		4893	15591	2623	2650	4812	4812					0.046581834364019414
CLGCCEMC	8	Unmodified	_CLGCCEMC_					0	0	0			REV__ENSG00000112559|ENST00000230321|MDFI	REV__ENSG00000112559|ENST00000230321|MDFI	MULTI-MSMS	HCT116MG_D190212_S4	4	861.24560546875	1	861.243184	860.235908	0.56068	0.00048288	1.262	0.0010869	1.8227	0.0015698	861.2453338422846	23.115	0.78305	22.877	22.603	23.386	-0.23758					38	14	4	0	0	0	0.88026	1	8044	8044		0	0	1	12670000	+		4894	11463	2624	2651	4813	4813					-0.19980051378172448
CLLGSTRSLPL	11	Unmodified	_CLLGSTRSLPL_					0	0	0		nc|ENSG00000187689|Q6UX39-2|AMTN	nc|ENSG00000187689|Q6UX39-2|AMTN	nc|ENSG00000187689|Q6UX39-2|AMTN	MSMS	HCT116MG_D190212_S4	4	387.22222900390625	3	387.221636	1158.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.787	1	23.532	23.032	24.032	-0.25445								0	0	0	0.95521	1	8347	8347		1.4551	0.26178	1				4895	9586	2625	2652	4814	4814					0.07010316696778318
CLLLCVGLN	9	Unmodified	_CLLLCVGLN_					0	0	0		ENST00000488495.1_1_20:746921-748985:-|nuORF	ENST00000488495.1_1_20:746921-748985:-|nuORF	ENST00000488495.1_1_20:746921-748985:-|nuORF	MSMS	HCT116MG_D190212_S1	1	473.7820739746094	2	474.256274	946.497995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.695	1	24.695	24.195	25.195	0								0	0	0	0.76575	1	8852	8852		15.847	1.2655	1				4896	8317	2626	2653	4815	4815					0.02260557296085608
CLMPNPHSE	9	Unmodified	_CLMPNPHSE_					0	0	0		ENST00000423038.1_1_X:47132767-47133175:-|nuORF	ENST00000423038.1_1_X:47132767-47133175:-|nuORF	ENST00000423038.1_1_X:47132767-47133175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	514.2200317382812	2	514.22042	1026.42629	0.27075	0.00013922	-0.76613	-0.00039396	-0.49538	-0.00025474	514.2198714405613	19.137	0.31234	19.137	18.975	19.287	0					10	5	3	0	0	0	0.1754	1	6629	6629		43.858	5.8843	1	5534600			4897	7797	2627	2654	4816	4816					-0.08586982128440468
CLPYCGCY	8	Unmodified	_CLPYCGCY_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	MSMS	HCT116MG_D190212_S2	2	461.169189453125	2	461.16881	920.323067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9721	1	1.9478	1.4478	2.4478	-0.024288								0	0	0	0.8837	1	636	636		0.79363	0.10326	1		+		4898	11724	2628	2655	4817	4817					-0.14028185840606966
CLPYCGCY	8	Unmodified	_CLPYCGCY_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	MSMS	HCT116MG_D190212_S2	2	461.16986083984375	2	461.16881	920.323067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.538	1	13.234	12.734	13.734	-0.30453								0	0	0	0.8837	1	4428	4428		0.79363	0.10326	1		+		4899	11724	2628	2655	4818	4818					-0.14028185840606966
CLPYCGCY	8	Unmodified	_CLPYCGCY_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	MSMS	HCT116MG_D190212_S3	3	461.1690979003906	2	461.16881	920.323067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.89147	1	0.95238	0.45238	1.4524	0.060905								0	0	0	0.8837	1	286	286		0.79363	0.10326	1		+		4900	11724	2628	2655	4819	4819					-0.14028185840606966
CLPYCGCY	8	Unmodified	_CLPYCGCY_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	MSMS	HCT116MG_D190212_S3	3	461.3411560058594	2	461.16881	920.323067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.016	1	13.085	12.585	13.585	0.069158								0	0	0	0.8837	1	4102	4102		0.79363	0	1		+		4901	11724	2628	2655	4820	4820					-0.14028185840606966
CLPYCGCY	8	Unmodified	_CLPYCGCY_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	MSMS	HCT116MG_D190212_S4	4	461.1688232421875	2	461.16881	920.323067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.565	1	64.331	63.831	64.831	-0.23412								0	0	0	0.8837	1	24289	24289		0.79363	0.10326	1		+		4902	11724	2628	2655	4821	4821					-0.14028185840606966
CLRCWPELSA	10	Unmodified	_CLRCWPELSA_					0	0	0		ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	MSMS	HCT116MG_D190212_S2	2	589.2764892578125	2	589.278269	1176.54198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.893	1	35.765	35.265	36.265	-0.12799								0	0	0	0.78084	1	13405	13405		31.268	0.6318	1				4903	6530	2629	2656	4822	4822					-0.03922458277588703
CLRCWPELSA	10	Unmodified	_CLRCWPELSA_					0	0	0		ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	MULTI-MSMS	HCT116MG_D190212_S4	4	589.2776489257812	2	589.278269	1176.54198	0.91475	0.00053904	-0.96585	-0.00056915	-0.051098	-3.0111E-05	589.2776744463582	33.463	0.19316	33.081	32.978	33.171	-0.38223					7	5	2	0	0	0	0.68623	1	12199	12199		21.537	2.175	1	3906200			4904	6530	2629	2656	4823	4823					-0.03922458277588703
CLRCWPELSA	10	Unmodified	_CLRCWPELSA_					0	0	0		ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	MULTI-MATCH	HCT116MG_D190212_S2	2		2	589.278269	1176.54198	0.87989	0.0005185	-0.50546	-0.00029786	0.37443	0.00022064	589.2778535980398	33.238	0.31092	33.045	32.863	33.174	-0.19297	-0.017887	0.00014541	NaN	21.537	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16203000			4905	6530	2629	2656							-0.03922458277588703
CLRCWPELSA	10	Unmodified	_CLRCWPELSA_					0	0	0		ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	589.278269	1176.54198	0.91475	0.00053904	-0.96585	-0.00056915	-0.051098	-3.0111E-05	589.2776744463582	33.463	0.19316	33.081	32.978	33.171	-0.38223	0.017887	-0.00039718	NaN	21.537	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3906200			4906	6530	2629	2656							-0.03922458277588703
CLRFTCKGL	9	Unmodified	_CLRFTCKGL_					0	0	0		nc|ENSG00000151287|Q5JUR7-2|TEX30;ENSG00000151287|ENST00000376032|TEX30	nc|ENSG00000151287|Q5JUR7-2|TEX30	nc|ENSG00000151287|Q5JUR7-2|TEX30	MSMS	HCT116MG_D190212_S4	4	520.772216796875	2	520.772622	1039.53069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.889	1	22.651	22.151	23.151	-0.23758								0	0	0	0.76718	1	7986	7986		10.824	0.75	1				4907	4105	2630	2657	4824	4824					0.012507644189327038
CLSKKDGL	8	Unmodified	_CLSKKDGL_					0	0	0		ENSG00000174236|ENST00000310791|REP15	ENSG00000174236|ENST00000310791|REP15	ENSG00000174236|ENST00000310791|REP15	MSMS	HCT116MG_D190212_S1	1	432.23809814453125	2	432.236396	862.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.804	1	55.804	55.304	56.304	0								0	0	0	0.8837	1	21438	21438		9.3474	1.4373	1				4908	5322	2631	2658	4825	4825					0.021507536170247477
CLSKKLVAVP	10	Unmodified	_CLSKKLVAVP_					0	0	0			REV__nc|ENSG00000167615|Q96PV6-1|LENG8	REV__nc|ENSG00000167615|Q96PV6-1|LENG8	MSMS	HCT116MG_D190212_S3	3	529.323486328125	2	529.325545	1056.63654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.841	1	39.539	39.039	40.039	-0.30137								0	0	0	0.95507	1	14777	14777		3.5965	0.60125	1		+		4909	13156	2632	2659	4826	4826					0.11048423536067276
CLSPILERDLC	11	Unmodified	_CLSPILERDLC_					0	0	0			REV__ENSG00000166153|ENST00000550587|DEPDC4	REV__ENSG00000166153|ENST00000550587|DEPDC4	MSMS	HCT116MG_D190212_S2	2	631.2481079101562	2	631.317591	1260.62063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.919	1	31.681	31.181	32.181	-0.2376								0	0	0	0.94416	1	11792	11792		9.3831	0	1		+		4910	13092	2633	2660	4827	4827					0.0007434923686560069
CLWFRCDVP	9	Unmodified	_CLWFRCDVP_					0	0	0		ITGAX|p.R1029W|1|0.42|ENSG00000140678|chr16:31380290-31380290|C/T|missense_variant	ITGAX|p.R1029W|1|0.42|ENSG00000140678|chr16:31380290-31380290|C/T|missense_variant	ITGAX|p.R1029W|1|0.42|ENSG00000140678|chr16:31380290-31380290|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	570.2642822265625	2	569.762255	1137.50996	0.23315	0.00013284	0.021139	1.2044E-05	0.25429	0.00014489	570.2640473132792	36.517	0.20974	36.517	36.365	36.574	0					6	3	2	0	0	0	0.49914	1	13634	13634		16.942	4.4107	1	7847500			4911	9248	2634	2661	4828	4828					-0.053298259607345244
CLYELPENI	9	Unmodified	_CLYELPENI_					0	0	0		ENST00000461762.5_1_9:132591268-132595829:-|nuORF;ENSG00000136819|ENST00000372447|C9orf78	ENST00000461762.5_1_9:132591268-132595829:-|nuORF	ENST00000461762.5_1_9:132591268-132595829:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	547.5164184570312	2	547.26535	1092.51615	0.22928	0.00012548	1.6534	0.00090486	1.8827	0.0010303	547.2661595636933	41.617	0.21851	41.315	41.231	41.45	-0.30257					14	10	2	0	0	0	0.21227	1	15503	15503		21.747	2.4897	1	18245000			4912	3435	2635	2662	4829	4829					-0.026410292482069053
CLYELPENI	9	Unmodified	_CLYELPENI_					0	0	0		ENST00000461762.5_1_9:132591268-132595829:-|nuORF;ENSG00000136819|ENST00000372447|C9orf78	ENST00000461762.5_1_9:132591268-132595829:-|nuORF	ENST00000461762.5_1_9:132591268-132595829:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	547.5167846679688	2	547.26535	1092.51615	0.53337	0.00029189	0.10035	5.4918E-05	0.63372	0.00034681	547.2653383986177	44.405	0.45527	44.032	43.83	44.286	-0.37373					14	9	2	0	0	0	0.25874	1	16278	16278		7.2892	7.2892	1	5954300			4913	3435	2635	2662	4830	4830					-0.026410292482069053
CLYPKDNW	8	Unmodified	_CLYPKDNW_					0	0	0			REV__nc|ENSG00000145113|Q99102-12|MUC4	REV__nc|ENSG00000145113|Q99102-12|MUC4	MSMS	HCT116MG_D190212_S2	2	519.7388305664062	2	519.739302	1037.46405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.229	1	9.9643	9.4643	10.464	-0.26472								0	0	0	0.8837	1	3225	3225		2.5775	0.51773	1		+		4914	12441	2636	2663	4831	4831					-0.05318147871321344
CMIVEFSRY	9	Unmodified	_CMIVEFSRY_					0	0	0		ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000279804|ENST00000624297|PRAMEF18	MSMS	HCT116MG_D190212_S1	1	383.2149963378906	3	383.180672	1146.52019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.06	1	39.06	38.56	39.56	0								0	0	0	0.76913	1	14642	14642		2.2828	0.5405	1				4915	6694	2637	2664	4832	4832					-0.047212630261356026
CMPCTCHE	8	Unmodified	_CMPCTCHE_					0	0	0			REV__nc|ENSG00000113269|Q86XS8-2|RNF130	REV__nc|ENSG00000113269|Q86XS8-2|RNF130	MSMS	HCT116MG_D190212_S1	1	462.30548095703125	2	462.147551	922.28055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.108	1	60.108	59.608	60.608	0								0	0	0	0.8837	1	23163	23163		0.79363	0.10326	1		+		4916	11478	2638	2665	4833	4833					-0.18369904240501
CMYFNWNQ	8	Unmodified	_CMYFNWNQ_					0	0	0			REV__tr|U7SXZ6|U7SXZ6_FUSNUTIGR01619familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00936PE=4SV=1	REV__tr|U7SXZ6|U7SXZ6_FUSNUTIGR01619familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00936PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	553.1962890625	2	553.215137	1104.41572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7151	1	4.4505	3.9505	4.9505	-0.26456								0	0	0	0.8837	1	1442	1442		0.79363	0.10326	1		+		4917	17866	2639	2666	4834	4834					-0.13230964782883348
CNELLTFYYQL	11	Unmodified	_CNELLTFYYQL_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MSMS	HCT116MG_D190212_S3	3	703.8394165039062	2	703.836671	1405.65879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.971	1	51.662	51.162	52.162	-0.30927								0	0	0	0.95273	1	19636	19636		4.897	0	1		+		4918	12612	2640	2667	4835	4835					-0.027814415768261824
CNGHGVCNN	9	Unmodified	_CNGHGVCNN_					0	0	0		ENST00000517951.5_1_5:156822576-156936463:-|nuORF;ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant;ENSG00000135074|ENST00000257527|ADAM19;nc|ENSG00000135074|Q9H013|ADAM19	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MSMS	HCT116MG_D190212_S1	1	458.7651062011719	2	459.171261	916.327969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.027	1	63.027	62.527	63.527	0								0	0	0	0.76973	1	24348	24348		1.8442	1.0506	1				4919	36	2641	2668	4836	4836					-0.1335416565362948
CNLRLWLHL	9	Unmodified	_CNLRLWLHL_					0	0	0			REV__ENST00000300853.7_1_19:45912063-45912522:-|nuORF	REV__ENST00000300853.7_1_19:45912063-45912522:-|nuORF	MSMS	HCT116MG_D190212_S4	4	584.327880859375	2	584.326411	1166.63827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.222	1	61.973	61.473	62.473	-0.24919								0	0	0	0.7701	1	23492	23492		0.52476	0	1		+		4920	14781	2642	2669	4837	4837					0.06161477344676314
CPCCPAHCCC	10	Unmodified	_CPCCPAHCCC_					0	0	0		nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;ILDR1|p.P304Lfs*32|1|0.31|ENSG00000145103|chr3:121993838-121993838|G/-|frameshift_variant;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	MSMS	HCT116MG_D190212_S1	1	520.2020874023438	2	520.140889	1038.26722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.95	1	50.95	50.45	51.45	0								0	0	0	0.97116	1	19454	19454		0	0	1				4921	3896	2643	2670	4838	4838					-0.25037801615758326
CPCCPAHCCC	10	Unmodified	_CPCCPAHCCC_					0	0	0		nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;ILDR1|p.P304Lfs*32|1|0.31|ENSG00000145103|chr3:121993838-121993838|G/-|frameshift_variant;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	MSMS	HCT116MG_D190212_S4	4	520.1380004882812	2	520.140889	1038.26722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.848	1	58.565	58.065	59.065	-0.28305								0	0	0	0.97116	1	22130	22130		0	0	1				4922	3896	2643	2670	4839	4839					-0.25037801615758326
CPCCRGGD	8	Unmodified	_CPCCRGGD_					0	0	0		ENST00000493082.5_1_5:879964-880063:-|nuORF	ENST00000493082.5_1_5:879964-880063:-|nuORF	ENST00000493082.5_1_5:879964-880063:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	810.2701416015625	1	810.26914	809.261863	0.83708	0.00067826	0.013033	1.056E-05	0.85011	0.00068882	810.2690656889603	22.836	0.50808	22.817	22.491	22.999	-0.018869					13	9	2	0	0	0	0.87685	1	7987	7987		0.6015	0.6015	1	6031300			4923	8355	2644	2671	4840	4840					-0.1503969782003196
CPCCRGGD	8	Unmodified	_CPCCRGGD_					0	0	0		ENST00000493082.5_1_5:879964-880063:-|nuORF	ENST00000493082.5_1_5:879964-880063:-|nuORF	ENST00000493082.5_1_5:879964-880063:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	810.26914	809.261863	0.82883	0.00067157	0.18379	0.00014892	1.0126	0.00082049	810.2692523993591	22.975	0.72961	22.975	22.741	23.471	0	0.10953	2.6401E-05	NaN	0.6015	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28315000			4924	8355	2644	2671							-0.1503969782003196
CPCCRGGD	8	Unmodified	_CPCCRGGD_					0	0	0		ENST00000493082.5_1_5:879964-880063:-|nuORF	ENST00000493082.5_1_5:879964-880063:-|nuORF	ENST00000493082.5_1_5:879964-880063:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	810.26914	809.261863	0.82029	0.00066466	0.48173	0.00039033	1.302	0.001055	810.2691103232767	23.189	0.36389	22.804	22.622	22.986	-0.3852	-0.061452	0.00026781	NaN	0.6015	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14564000			4925	8355	2644	2671							-0.1503969782003196
CPCCYEYDH	9	Unmodified	_CPCCYEYDH_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MSMS	HCT116MG_D190212_S1	1	566.6788940429688	2	566.68027	1131.34599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.539	1	50.539	50.039	51.039	0								0	0	0	0.76967	1	19287	19287		2.0598	0.21551	1		+		4926	13601	2645	2672	4841	4841					-0.21443211513792448
CPERFSKKNK	10	Unmodified	_CPERFSKKNK_					0	0	0		nc|ENSG00000021461|Q9HB55-6|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43	nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-6|CYP3A43	MSMS	HCT116MG_D190212_S1	1	412.8882751464844	3	412.888768	1235.64448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4357	1	9.4357	8.9357	9.9357	0								0	0	0	0.96804	1	2859	2859		0.69767	0.07084	1				4927	942	2646	2673	4842	4842					0.03607950785522007
CPLKLRGP	8	Unmodified	_CPLKLRGP_					0	0	0			REV__ENST00000278550.11_1_11:78859783-78926862:-|nuORF	REV__ENST00000278550.11_1_11:78859783-78926862:-|nuORF	MSMS	HCT116MG_D190212_S4	4	442.2646179199219	2	442.262748	882.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.616	1	38.235	37.735	38.735	-0.38163								0	0	0	0.8837	1	14159	14159		9.3474	0.75416	1		+		4928	14711	2647	2674	4843	4843					0.06498756470489297
CPLSGEKA	8	Unmodified	_CPLSGEKA_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MSMS	HCT116MG_D190212_S4	4	402.70013427734375	2	402.699646	803.384739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.285	1	34.898	34.398	35.398	-0.38606								0	0	0	0.8837	1	12917	12917		8.5933	0.68312	1				4929	3371	2648	2675	4844	4844					-0.024817948254508337
CPNRTWMK	8	Unmodified	_CPNRTWMK_					0	0	0			REV__ENST00000450663.1_1_1:173111181-173111367:-|nuORF	REV__ENST00000450663.1_1_1:173111181-173111367:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2470703125	2	518.246772	1034.47899	0.56887	0.00029482	-0.95153	-0.00049313	-0.38266	-0.00019831	518.2464486217339	17.228	0.46948	17.228	16.994	17.463	0					11	8	2	0	0	0	0.79834	1	5888	5888		11.64	2.8949	1	1908100	+		4930	15707	2649	2676	4845	4845					-0.03686979274971236
CPPCPLLA	8	Unmodified	_CPPCPLLA_					0	0	0			REV__ENSG00000147571|ENST00000276571|CRH	REV__ENSG00000147571|ENST00000276571|CRH	MSMS	HCT116MG_D190212_S2	2	407.203857421875	2	407.20351	812.392467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.918	1	11.629	11.129	12.129	-0.28953								0	0	0	0.8837	1	3869	3869		0.79363	0	1		+		4931	12517	2650	2677	4846	4846					-0.021233588295217487
CPPRKPLP	8	Unmodified	_CPPRKPLP_					0	0	0			REV__ENSG00000206260|ENST00000383163|PRR23A	REV__ENSG00000206260|ENST00000383163|PRR23A	MSMS	HCT116MG_D190212_S3	3	454.38922119140625	2	454.262748	906.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.891	1	58.627	58.127	59.127	-0.26405								0	0	0	0.8837	1	22413	22413		2.3027	0	1		+		4932	14240	2651	2678	4847	4847					0.05394756470491302
CPQCGNHDS	9	Unmodified	_CPQCGNHDS_					0	0	0		tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	tr|U7SXE1|U7SXE1_FUSNUAnaerobicribonucleoside-triphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00945PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	480.6675720214844	2	480.668551	959.322549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.335	1	2.3107	1.8107	2.8107	-0.024288								0	0	0	0.7701	1	763	763		0.52476	0.52476	1				4933	18512	2652	2679	4848	4848					-0.15873889236104333
CPRGGLHQQGP	11	Unmodified	_CPRGGLHQQGP_					0	0	0			REV__PGBD4|p.R506G|1|0.27|ENSG00000182405|chr15:34104047-34104047|C/G|missense_variant	REV__PGBD4|p.R506G|1|0.27|ENSG00000182405|chr15:34104047-34104047|C/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	575.2882080078125	2	575.282731	1148.55091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.743	1	26.442	25.942	26.942	-0.30087								0	0	0	0.81249	1	9541	9541		31.268	0.6318	1		+		4934	17409	2653	2680	4849	4849					-0.017423485968947716
CPRVLLKKL	9	Unmodified	_CPRVLLKKL_					0	0	0		SLC34A2|p.P584L|1|0.32|ENSG00000157765|chr4:25676427-25676427|C/T|missense_variant	SLC34A2|p.P584L|1|0.32|ENSG00000157765|chr4:25676427-25676427|C/T|missense_variant	SLC34A2|p.P584L|1|0.32|ENSG00000157765|chr4:25676427-25676427|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	357.2355041503906	3	357.235328	1068.68416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.394	1	56.11	55.61	56.61	-0.28367								0	0	0	0.77018	1	21408	21408		0.26902	0	1				4935	18161	2654	2681	4850	4850					0.1525612252692099
CQGRVLPA	8	Unmodified	_CQGRVLPA_					0	0	0			REV__ENST00000314228.9_1_19:44037472-44038033:+|nuORF	REV__ENST00000314228.9_1_19:44037472-44038033:+|nuORF	MSMS	HCT116MG_D190212_S3	3	422.228759765625	2	422.228905	842.443257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.825	1	24.741	24.241	25.241	-0.083694								0	0	0	0.68119	1	8834	8834		32.117	0	1		+		4936	14853	2655	2682	4851	4851					0.015733065396716484
CQKPRSLAAIE	11	Unmodified	_CQKPRSLAAIE_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MSMS	HCT116MG_D190212_S1	1	608.0606689453125	2	608.329347	1214.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.521	1	44.521	44.021	45.021	0								0	0	0	0.94012	1	16845	16845		11.495	0.6952	1				4937	5560	2656	2683	4852	4852					0.045405310656633446
CREQGLRGKP	10	Unmodified	_CREQGLRGKP_					0	0	0		ENST00000370828.3_1_X:132445305-132458320:-|nuORF	ENST00000370828.3_1_X:132445305-132458320:-|nuORF	ENST00000370828.3_1_X:132445305-132458320:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	572.3053588867188	2	572.306207	1142.59786	0.15177	8.686E-05	-2.126	-0.0012167	-1.9743	-0.0011299	572.3053072895044	32.254	0.26006	32.254	32.118	32.378	0					9	4	3	0	0	0	0.72678	1	11918	11918		18.146	1.9972	1	8027500			4938	7433	2657	2684	4853	4853					0.032265109542322534
CRERGLQERWP	11	Unmodified	_CRERGLQERWP_					0	0	0		ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	MSMS	HCT116MG_D190212_S4	4	715.3622436523438	2	715.359502	1428.70445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.168	1	26.856	26.356	27.356	-0.3114								0	0	0	0.95025	1	9713	9713		6.1918	0.46	1				4939	2970	2658	2685	4854	4854					0.007246414487781294
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S3	3	758.22216796875	1	758.220081	757.212805	0.30013	0.00022756	1.1501	0.00087204	1.4502	0.0010996	758.2220664939503	17.497	1.2487	17.578	17.065	18.314	0.081356					34	23	2	0	0	0	0.88026	1	5890	5890		0	0	1	1621100			4940	9667	2659	2686	4855	4855					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S3	3	758.222900390625	1	758.220081	757.212805	0.60609	0.00045955	1.4002	0.0010616	2.0062	0.0015212	758.2220414681623	24.763	0.7815	24.68	24.393	25.174	-0.083694					17	14	2	0	0	0	0.88026	1	8869	8869		0	0	1	1578000			4941	9667	2659	2686	4856	4856					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S3	3	758.221435546875	1	758.220081	757.212805	0.63906	0.00048455	0.99975	0.00075803	1.6388	0.0012426	758.2218173930082	56.482	3.0953	56.199	54.359	57.455	-0.28367					81	58	2	0	0	0	0.88026	3	21153	21153;21405;21869		0	0	1	1296300			4942	9667	2659	2686	4857;4858;4859	4857					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S4	4	758.2221069335938	1	758.220081	757.212805	0.87438	0.00066297	0.63097	0.00047841	1.5053	0.0011414	758.2217909871254	20.633	1.6106	20.432	19.625	21.235	-0.20133					47	30	2	0	0	0	0.88026	2	6922	6922;7194		0	0	1	1854100			4943	9667	2659	2686	4860;4861	4860					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S4	4	758.2230834960938	1	758.220081	757.212805	0.93406	0.00070822	1.0761	0.00081596	2.0102	0.0015242	758.2216333566586	34.339	1.9499	33.953	32.956	34.906	-0.38558					50	40	2	0	0	0	0.88026	2	12296	12296;12556		0	0	1	1889000			4944	9667	2659	2686	4862;4863	4862					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S4	4	758.2224731445312	1	758.220081	757.212805	0.96027	0.0007281	0.68048	0.00051596	1.6408	0.0012441	758.2213111549618	36.22	0.94365	35.834	35.491	36.434	-0.38558					23	18	2	0	0	0	0.88026	1	13343	13343		0	0	1	1663700			4945	9667	2659	2686	4864	4864					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S4	4	758.2211303710938	1	758.220081	757.212805	0.88228	0.00066896	0.33234	0.00025199	1.2146	0.00092095	758.2212968128064	40.885	0.66088	40.507	40.235	40.896	-0.37732					15	13	2	0	0	0	0.88026	1	15089	15089		0	0	1	2107800			4946	9667	2659	2686	4865	4865					-0.1755130938062166
CRGCCGGC	8	Unmodified	_CRGCCGGC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S4	4	758.2223510742188	1	758.220081	757.212805	1.0463	0.00079331	0.81124	0.0006151	1.8575	0.0014084	758.2215905399963	57.535	1.826	57.24	55.948	57.774	-0.29465					54	34	2	0	0	0	0.88026	1	21603	21603		0	0	1	1445900			4947	9667	2659	2686	4866	4866					-0.1755130938062166
CRGGGCHCVHC	11	Unmodified	_CRGGGCHCVHC_					0	0	0			REV__ENST00000425806.2_1_1:101406941-101407361:-|nuORF	REV__ENST00000425806.2_1_1:101406941-101407361:-|nuORF	MSMS	HCT116MG_D190212_S1	1	566.2064819335938	2	566.206798	1130.39904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.234	1	39.234	38.734	39.734	0								0	0	0	0.96208	1	14712	14712		0	0	1		+		4948	15548	2660	2687	4867	4867					-0.16094112212113032
CRGGVDTAAA	10	Unmodified	_CRGGVDTAAA_					0	0	0		ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	MULTI-MSMS	HCT116MG_D190212_S2	2	920.4267578125	1	920.425441	919.418164	0.67317	0.00061961	0.25624	0.00023585	0.92941	0.00085545	920.4256889802247	15.673	0.31327	15.34	15.221	15.534	-0.33286					6	5	2	0	0	0	0.6277	1	5236	5236		26.268	0.86883	1	3751200			4949	6111	2661	2688	4868	4868					-0.04476793053561323
CRGRTWADAVR	11	Unmodified	_CRGRTWADAVR_					0	0	0			REV__ENST00000369214.2_1_6:100062108-100062660:+|nuORF	REV__ENST00000369214.2_1_6:100062108-100062660:+|nuORF	MSMS	HCT116MG_D190212_S2	2	430.88763427734375	3	430.88765	1289.64112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.75254	1	0.74628	0.24628	1.2463	-0.00626								0	0	0	0.96208	1	253	253		0	0	1		+		4950	15141	2662	2689	4869	4869					0.007887007314820949
CRHLTDYFTF	10	Unmodified	_CRHLTDYFTF_					0	0	0		nc|ENSG00000120910|P48454-2|PPP3CC;ENSG00000120910|ENST00000240139|PPP3CC;nc|ENSG00000120910|P48454-3|PPP3CC	nc|ENSG00000120910|P48454-2|PPP3CC	nc|ENSG00000120910|P48454-2|PPP3CC	MSMS	HCT116MG_D190212_S4	4	651.8018188476562	2	651.800423	1301.58629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.525	1	40.147	39.647	40.647	-0.37828								0	0	0	0.92917	1	14871	14871		9.3831	2.2814	1				4951	2717	2663	2690	4870	4870					-0.05243730859774587
CRLHPASAMDL	11	Unmodified	_CRLHPASAMDL_					0	0	0		ENST00000490837.1_1_2:239103269-239112329:-|nuORF;ENST00000467133.5_1_2:239098583-239112329:-|nuORF	ENST00000490837.1_1_2:239103269-239112329:-|nuORF	ENST00000490837.1_1_2:239103269-239112329:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	607.2953491210938	2	607.29445	1212.57435	0.46565	0.00028279	-0.34664	-0.00021051	0.11901	7.2272E-05	607.2943143795426	23.843	0.57325	23.781	23.374	23.947	-0.061447					16	10	2	0	0	0	0.70073	1	8400	8400		21.537	7.1316	1	3315400			4952	8113	2664	2691	4871	4871					-0.023436708745748547
CRPAGIASPP	10	Unmodified	_CRPAGIASPP_					0	0	0		ENST00000333082.7_2_20:1145765-1146050:+|nuORF	ENST00000333082.7_2_20:1145765-1146050:+|nuORF	ENST00000333082.7_2_20:1145765-1146050:+|nuORF	MSMS	HCT116MG_D190212_S1	1	484.75445556640625	2	484.752744	967.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.292	1	15.292	14.792	15.792	0								0	0	0	0.90892	1	5070	5070		13.906	3.0821	1				4953	7174	2665	2692	4872	4872					0.005889607398557928
CRPCCEGE	8	Unmodified	_CRPCCEGE_					0	0	0			REV__nc|ENSG00000165973|Q92832-2|NELL1	REV__nc|ENSG00000165973|Q92832-2|NELL1	MULTI-MSMS	HCT116MG_D190212_S1	1	896.3069458007812	1	896.305919	895.298643	0.70085	0.00062818	0.22126	0.00019832	0.92211	0.0008265	896.3061904159468	23.706	0.67971	23.706	23.523	24.202	0					23	12	2	0	0	0	0.8506	1	8435	8435		5.2307	0.47466	1	28282000	+		4954	13085	2666	2693	4873	4873					-0.1531944599412327
CRPLLLIEL	9	Unmodified	_CRPLLLIEL_					0	0	0			REV__ENST00000397042.7_1_20:37204638-37204872:+|nuORF	REV__ENST00000397042.7_1_20:37204638-37204872:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	535.3259887695312	2	535.325545	1068.63654	0.40603	0.00021736	0.5555	0.00029737	0.96153	0.00051473	535.3255450398042	56.299	0.36114	56.299	56.067	56.428	0					11	6	3	0	0	0	0.21251	1	21649	21649		39.957	19.543	1	27684000	+		4955	15363	2667	2694	4874	4874					0.10496423536051225
CRPLLLIEL	9	Unmodified	_CRPLLLIEL_					0	0	0			REV__ENST00000397042.7_1_20:37204638-37204872:+|nuORF	REV__ENST00000397042.7_1_20:37204638-37204872:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	535.3255615234375	2	535.325545	1068.63654	0.56552	0.00030273	0.068746	3.6801E-05	0.63426	0.00033954	535.325323250983	56.364	0.30999	56.182	55.949	56.259	-0.18261					12	5	3	0	0	0	0.21251	1	21774	21774		39.957	18.211	1	31932000	+		4956	15363	2667	2694	4875	4875					0.10496423536051225
CRPLLLIEL	9	Unmodified	_CRPLLLIEL_					0	0	0			REV__ENST00000397042.7_1_20:37204638-37204872:+|nuORF	REV__ENST00000397042.7_1_20:37204638-37204872:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	535.325545	1068.63654	0.40603	0.00021736	0.5555	0.00029737	0.96153	0.00051473	535.3255450398042	56.299	0.36114	56.299	56.067	56.428	0	0.058815	0.00034846	NaN	39.957	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27684000	+		4957	15363	2667	2694							0.10496423536051225
CRPLLLIEL	9	Unmodified	_CRPLLLIEL_					0	0	0			REV__ENST00000397042.7_1_20:37204638-37204872:+|nuORF	REV__ENST00000397042.7_1_20:37204638-37204872:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	535.325545	1068.63654	0.56552	0.00030273	0.068746	3.6801E-05	0.63426	0.00033954	535.325323250983	56.364	0.30999	56.182	55.949	56.259	-0.18261	-0.058815	-0.00017268	NaN	39.957	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31932000	+		4958	15363	2667	2694							0.10496423536051225
CRQNCLWCSP	10	Unmodified	_CRQNCLWCSP_					0	0	0			REV__ENSG00000168939|ENST00000695325|SPRY3	REV__ENSG00000168939|ENST00000695325|SPRY3	MSMS	HCT116MG_D190212_S2	2	605.2507934570312	2	605.251728	1208.4889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.335	1	35.193	34.693	35.693	-0.14245								0	0	0	0.95648	1	13177	13177		3.2813	0.28607	1		+		4959	13216	2668	2695	4876	4876					-0.1070015933189552
CRQPYCCCCC	10	Unmodified	_CRQPYCCCCC_					0	0	0		ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	MSMS	HCT116MG_D190212_S1	1	591.1788330078125	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9543	1	4.9543	4.4543	5.4543	0								0	0	0	0.96911	1	1495	1495		0.45834	0	1				4960	7533	2669	2696	4877	4877					-0.24150458524218266
CRQPYCCCCC	10	Unmodified	_CRQPYCCCCC_					0	0	0		ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	MSMS	HCT116MG_D190212_S2	2	591.1781616210938	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2095	1	6.9937	6.4937	7.4937	-0.21581								0	0	0	0.96911	1	2261	2261		0.45834	0	1				4961	7533	2669	2696	4878	4878					-0.24150458524218266
CRRTMKKIKRR	11	Unmodified	_CRRTMKKIKRR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S2	2	738.4490356445312	2	738.447931	1474.88131	0.8852	0.00065367	0.32129	0.00023725	1.2065	0.00089093	738.4479797743926	53.415	1.3941	53.226	52.293	53.687	-0.18932					86	26	4	0	0	0	0.74191	1	20268	20268		2.4985	1.0166	1	114620000			4962	4258;9506	2670	2697	4879	4879					0.16286398798024493
CRRVEITP	8	Unmodified	_CRRVEITP_					0	0	0			REV__ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant	REV__ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	486.7649230957031	2	487.266019	972.517485	0.20275	9.8795E-05	0.77031	0.00037534	0.97306	0.00047414	487.26639895839037	19.709	0.15655	19.334	19.246	19.403	-0.37503					4	2	2	0	0	0	0.31097	1	6870	6870		7.2892	0	1	6469100	+		4963	9939	2671	2698	4880	4880					0.03012649631205022
CSCQCLCVY	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))SCQCLC(Carbamidomethyl (C))VY_	C(0.461)SC(0.461)QC(0.217)LC(0.862)VY		C(0)SC(0)QC(-6.1)LC(8)VY		0	2	0		ENST00000256031.8_1_3:194126792-194134563:-|nuORF	ENST00000256031.8_1_3:194126792-194134563:-|nuORF	ENST00000256031.8_1_3:194126792-194134563:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	567.8173217773438	2	568.205598	1134.39664	0.33759	0.00019182	-0.44015	-0.00025009	-0.10256	-5.8273E-05	568.2052779880794	22.734	0.20835	22.734	22.585	22.793	0					5	3	2	0	0	0	0.19218	1	8074	8074		42.095	21.641	6	3228100			4964	6819	2672	2699	4881	4881	40;41;42				-0.1651800546044342
CSCQCLCVY	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))SCQCLC(Carbamidomethyl (C))VY_	C(0.461)SC(0.461)QC(0.217)LC(0.862)VY		C(0)SC(0)QC(-6.1)LC(8)VY		0	2	0		ENST00000256031.8_1_3:194126792-194134563:-|nuORF	ENST00000256031.8_1_3:194126792-194134563:-|nuORF	ENST00000256031.8_1_3:194126792-194134563:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	568.2052612304688	2	568.205598	1134.39664	0.36412	0.0002069	-1.0015	-0.00056908	-0.63742	-0.00036219	568.2051775073706	23.067	0.31223	22.682	22.466	22.778	-0.38521					8	5	2	0	0	0	0.19218	1	8204	8204		42.095	13.013	6	9853500			4965	6819	2672	2699	4882	4882	40;41;42				-0.1651800546044342
CSDCSHEA	8	Unmodified	_CSDCSHEA_					0	0	0			REV__ZNF521|p.V46E|1|0.29|ENSG00000198795|chr18:25322091-25322091|A/T|missense_variant	REV__ZNF521|p.V46E|1|0.29|ENSG00000198795|chr18:25322091-25322091|A/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	426.1370544433594	2	426.136553	850.258552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7428	1	8.4988	7.9988	8.9988	-0.24401								0	0	0	0.8837	1	2730	2730		0.69038	0.69038	1		+		4966	18083	2673	2700	4883	4883					-0.17256669393054835
CSDTSCCC	8	Unmodified	_CSDTSCCC_					0	0	0			REV__BMPR2|p.L122S|1|0.34|ENSG00000204217|chr2:202467636-202467636|T/C|missense_variant	REV__BMPR2|p.L122S|1|0.34|ENSG00000204217|chr2:202467636-202467636|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	411.0993347167969	2	411.100267	820.185981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.61	1	11.61	11.11	12.11	0								0	0	0	0.8837	1	3669	3669		0	0	1		+		4967	10047	2674	2701	4884	4884					-0.23130462782489758
CSDTSCCC	8	Unmodified	_CSDTSCCC_					0	0	0			REV__BMPR2|p.L122S|1|0.34|ENSG00000204217|chr2:202467636-202467636|T/C|missense_variant	REV__BMPR2|p.L122S|1|0.34|ENSG00000204217|chr2:202467636-202467636|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	411.0987243652344	2	411.100267	820.185981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.94	1	11.94	11.44	12.44	0								0	0	0	0.8837	1	3801	3801		0	0	1		+		4968	10047	2674	2701	4885	4885					-0.23130462782489758
CSDTSCCC	8	Unmodified	_CSDTSCCC_					0	0	0			REV__BMPR2|p.L122S|1|0.34|ENSG00000204217|chr2:202467636-202467636|T/C|missense_variant	REV__BMPR2|p.L122S|1|0.34|ENSG00000204217|chr2:202467636-202467636|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	411.0993347167969	2	411.100267	820.185981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.044	1	63.044	62.544	63.544	0								0	0	0	0.8837	1	24355	24355		0	0	1		+		4969	10047	2674	2701	4886	4886					-0.23130462782489758
CSDWYSSP	8	Unmodified	_CSDWYSSP_					0	0	0			REV__SLC12A1|p.A390Sfs*58|1|0.33|ENSG00000074803|chr15:48234945-48234946|-/T|frameshift_variant	REV__SLC12A1|p.A390Sfs*58|1|0.33|ENSG00000074803|chr15:48234945-48234946|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	944.3455200195312	1	944.345459	943.338183	0.098346	9.2872E-05	0.24906	0.0002352	0.34741	0.00032808	944.3455300253623	16.888	0.41549	16.722	16.504	16.919	-0.16664					9	7	2	0	0	0	0.86564	1	5572	5572		2.5775	2.5775	1	2193700	+		4970	17519	2675	2702	4887	4887					-0.13575279447400135
CSEHINKTV	9	Unmodified	_CSEHINKTV_					0	0	0			REV__ENST00000497281.5_1_X:153763381-153774262:-|nuORF	REV__ENST00000497281.5_1_X:153763381-153774262:-|nuORF	MSMS	HCT116MG_D190212_S2	2	515.7512817382812	2	515.752941	1029.49133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.164	1	32.953	32.453	33.453	-0.21135								0	0	0	0.74436	1	12296	12296		16.942	0	1		+		4971	12824	2676	2703	4888	4888					-0.022236643309497595
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S1	1	593.1577758789062	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6811	1	7.6811	7.1811	8.1811	0								0	0	0	0.96149	1	2321	2321		0.30703	0.30703	1				4972	7107	2677	2704	4889	4889					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S1	1	593.157958984375	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.313	1	25.313	24.813	25.813	0								0	0	0	0.96157	1	9100	9100		0.26902	0.26902	1				4973	7107	2677	2704	4890	4890					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S1	1	593.1580810546875	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.949	1	25.949	25.449	26.449	0								0	0	0	0.96157	1	9356	9356		0.26902	0.26902	1				4974	7107	2677	2704	4891	4891					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	592.9739990234375	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.376	1	14.057	13.557	14.557	-0.31854								0	0	0	0.96157	1	4701	4701		0.26902	0.26902	1				4975	7107	2677	2704	4892	4892					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	593.1580200195312	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.116	1	14.789	14.289	15.289	-0.32684								0	0	0	0.96157	1	4999	4999		0.26902	0.26902	1				4976	7107	2677	2704	4893	4893					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	593.15771484375	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.695	1	15.36	14.86	15.86	-0.33451								0	0	0	0.96157	1	5232	5232		0.26902	0.26902	1				4977	7107	2677	2704	4894	4894					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	593.1578369140625	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.101	1	17.745	17.245	18.245	-0.35647								0	0	0	0.96157	1	6201	6201		0.26902	0.26902	1				4978	7107	2677	2704	4895	4895					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	592.7518310546875	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.111	1	18.742	18.242	19.242	-0.3695								0	0	0	0.96157	1	6608	6608		0.26902	0.26902	1				4979	7107	2677	2704	4896	4896					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	593.3158569335938	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.371	1	19.002	18.502	19.502	-0.3695								0	0	0	0.96157	1	6713	6713		0.26902	0.26902	1				4980	7107	2677	2704	4897	4897					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	593.1578979492188	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.485	1	19.116	18.616	19.616	-0.3695								0	0	0	0.96157	1	6759	6759		0.26902	0.26902	1				4981	7107	2677	2704	4898	4898					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	593.1577758789062	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.214	1	19.835	19.335	20.335	-0.37911								0	0	0	0.96157	1	7054	7054		0.26902	0.26902	1				4982	7107	2677	2704	4899	4899					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	593.15771484375	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.091	1	20.708	20.208	21.208	-0.38288								0	0	0	0.96163	1	7404	7404		0.23584	0.23584	1				4983	7107	2677	2704	4900	4900					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S4	4	593.1581420898438	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.753	1	16.586	16.086	17.086	-0.16664								0	0	0	0.96157	1	5507	5507		0.26902	0.26902	1				4984	7107	2677	2704	4901	4901					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S4	4	593.1577758789062	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.318	1	17.147	16.647	17.647	-0.17047								0	0	0	0.96157	1	5736	5736		0.26902	0.26902	1				4985	7107	2677	2704	4902	4902					-0.28001022538592224
CSGDDDDDNDD	11	Unmodified	_CSGDDDDDNDD_					0	0	0		ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	ENST00000322002.4_1_2:5834175-5834352:+|nuORF	MSMS	HCT116MG_D190212_S4	4	593.1577758789062	2	593.159661	1184.30477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.466	1	18.285	17.785	18.785	-0.18052								0	0	0	0.96157	1	6199	6199		0.26902	0.26902	1				4986	7107	2677	2704	4903	4903					-0.28001022538592224
CSGDSDCM	8	Unmodified	_CSGDSDCM_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MSMS	HCT116MG_D190212_S2	2	409.11041259765625	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3132	1	3.2511	2.7511	3.7511	-0.062129								0	0	0	0.8837	1	1059	1059		0.69038	0	1		+		4987	10793	2678	2705	4904	4904					-0.20663120393351164
CSHCCSCK	8	Unmodified	_CSHCCSCK_					0	0	0			REV__ENST00000409484.5_1_2:172378760-172398215:+|nuORF	REV__ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	870.2725219726562	1	870.272511	869.265234	0.2534	0.00022053	0.11581	0.00010079	0.36921	0.00032132	870.2723725795736	16.537	1.3195	16.371	16.221	17.54	-0.16664					53	25	3	0	0	0	0.87635	1	5633	5633		0.69038	0.69038	1	7022400	+		4988	15437	2679	2706	4905	4905					-0.17462771037685343
CSLHCDSYQ	9	Unmodified	_CSLHCDSYQ_					0	0	0			REV__ENST00000379868.5_1_9:32467845-32467908:-|nuORF	REV__ENST00000379868.5_1_9:32467845-32467908:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	528.1994018554688	2	528.199684	1054.38482	0.39309	0.00020763	0.043507	2.298E-05	0.4366	0.00023061	528.1995190068226	22.046	0.26059	21.661	21.531	21.792	-0.38503					7	4	2	0	0	0	0.23138	1	7807	7807		37.974	5.6685	1	14086000	+		4989	15263	2680	2707	4906	4906					-0.1402016288775485
CSPHQHWG	8	Unmodified	_CSPHQHWG_					0	0	0			REV__ENST00000525334.5_1_11:843618-847263:+|nuORF	REV__ENST00000525334.5_1_11:843618-847263:+|nuORF	MSMS	HCT116MG_D190212_S4	4	476.198486328125	2	476.198136	950.381719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7678	1	8.5471	8.0471	9.0471	-0.22071								0	0	0	0.8837	1	2681	2681		0.69038	0	1		+		4990	16270	2681	2708	4907	4907					-0.09545625159603333
CTGCGCHC	8	Unmodified	_CTGCGCHC_					0	0	0		ENST00000394430.5_1_11:64511414-64511849:-|nuORF	ENST00000394430.5_1_11:64511414-64511849:-|nuORF	ENST00000394430.5_1_11:64511414-64511849:-|nuORF	MSMS	HCT116MG_D190212_S2	2	392.10418701171875	2	392.105687	782.19682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2374	1	2.2131	1.7131	2.7131	-0.024288								0	0	0	0.8837	1	731	731		0	0	1				4991	7634	2682	2709	4908	4908					-0.20299015617536043
CTGCGCHC	8	Unmodified	_CTGCGCHC_					0	0	0		ENST00000394430.5_1_11:64511414-64511849:-|nuORF	ENST00000394430.5_1_11:64511414-64511849:-|nuORF	ENST00000394430.5_1_11:64511414-64511849:-|nuORF	MSMS	HCT116MG_D190212_S4	4	392.1040344238281	2	392.105687	782.19682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0322	1	1.7677	1.2677	2.2677	-0.26456								0	0	0	0.8837	1	620	620		0	0	1				4992	7634	2682	2709	4909	4909					-0.20299015617536043
CTGIVMVPKKV	11	Unmodified	_CTGIVMVPKKV_					0	0	0			REV__ENSG00000136999|ENST00000259526|CCN3	REV__ENSG00000136999|ENST00000259526|CCN3	MSMS	HCT116MG_D190212_S4	4	392.23907470703125	3	392.227734	1173.66137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.402	1	56.096	55.596	56.596	-0.30626								0	0	0	0.9598	1	21142	21142		0.40827	0.13925	1		+		4993	12159	2683	2710	4910	4910					0.08148735347117508
CTPESCYCCC	10	Unmodified	_CTPESCYCCC_					0	0	0			REV__ENSG00000188581|ENST00000306271|KRTAP1-1	REV__ENSG00000188581|ENST00000306271|KRTAP1-1	MSMS	HCT116MG_D190212_S3	3	556.5433959960938	2	556.154716	1110.29488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.301	1	17.384	16.884	17.884	0.082605								0	0	0	0.97116	1	5803	5803		0	0	1		+		4994	13960	2684	2711	4911	4911					-0.2558561987450503
CTPESCYCCC	10	Unmodified	_CTPESCYCCC_					0	0	0			REV__ENSG00000188581|ENST00000306271|KRTAP1-1	REV__ENSG00000188581|ENST00000306271|KRTAP1-1	MSMS	HCT116MG_D190212_S4	4	371.1060791015625	3	371.10557	1110.29488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.448	1	49.086	48.586	49.586	-0.36213								0	0	0	0.97116	1	18342	18342		0	0	1		+		4995	13960	2684	2711	4912	4912					-0.2558561987450503
CTPHMLSDAPQ	11	Unmodified	_CTPHMLSDAPQ_					0	0	0			REV__ENST00000524342.5_1_5:133478626-133478800:+|nuORF	REV__ENST00000524342.5_1_5:133478626-133478800:+|nuORF	MSMS	HCT116MG_D190212_S3	3	600.2625732421875	2	600.262816	1198.51108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.096	1	18.172	17.672	18.672	0.076334								0	0	0	0.85129	1	6124	6124		26.268	4.7312	1		+		4996	16259	2685	2712	4913	4913					-0.08023656382488298
CVASHMKE	8	Unmodified	_CVASHMKE_					0	0	0			REV__TBC1D1|p.G892C|1|0.34|ENSG00000065882|chr4:38115826-38115826|G/T|missense_variant	REV__TBC1D1|p.G892C|1|0.34|ENSG00000065882|chr4:38115826-38115826|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	452.7042541503906	2	452.704405	903.394258	0.07505	3.3975E-05	0.01858	8.4114E-06	0.09363	4.2387E-05	452.7043457012691	15.978	0.20831	15.978	15.848	16.056	0					8	3	3	0	0	0	0.09113	1	5353	5353		97.075	26.359	1	19049000	+		4997	17617	2686	2713	4914	4914					-0.06130349811576252
CVASHMKE	8	Unmodified	_CVASHMKE_					0	0	0			REV__TBC1D1|p.G892C|1|0.34|ENSG00000065882|chr4:38115826-38115826|G/T|missense_variant	REV__TBC1D1|p.G892C|1|0.34|ENSG00000065882|chr4:38115826-38115826|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	452.7046813964844	2	452.704405	903.394258	0.071357	3.2304E-05	-0.0089247	-4.0402E-06	0.062432	2.8263E-05	452.7042910183881	16.363	0.5213	16.022	15.891	16.412	-0.34183					10	9	2	0	0	0	0.14246	1	5511	5511		85.357	31.781	1	13957000	+		4998	17617	2686	2713	4915	4915					-0.06130349811576252
CVASHMKE	8	Unmodified	_CVASHMKE_					0	0	0			REV__TBC1D1|p.G892C|1|0.34|ENSG00000065882|chr4:38115826-38115826|G/T|missense_variant	REV__TBC1D1|p.G892C|1|0.34|ENSG00000065882|chr4:38115826-38115826|G/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	452.704405	903.394258	0.07505	3.3975E-05	0.01858	8.4114E-06	0.09363	4.2387E-05	452.7043457012691	15.978	0.20831	15.978	15.848	16.056	0	-0.021713	7.6667E-06	NaN	97.075	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19049000	+		4999	17617	2686	2713							-0.06130349811576252
CVASHMKE	8	Unmodified	_CVASHMKE_					0	0	0			REV__TBC1D1|p.G892C|1|0.34|ENSG00000065882|chr4:38115826-38115826|G/T|missense_variant	REV__TBC1D1|p.G892C|1|0.34|ENSG00000065882|chr4:38115826-38115826|G/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	452.704405	903.394258	0.071357	3.2304E-05	-0.0089247	-4.0402E-06	0.062432	2.8263E-05	452.7042910183881	16.363	0.5213	16.022	15.891	16.412	-0.34183	0.021713	-1.7237E-05	NaN	97.075	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13957000	+		5000	17617	2686	2713							-0.06130349811576252
CVHLFHHHK	9	Unmodified	_CVHLFHHHK_					0	0	0			REV__ENST00000451085.5_1_7:110731500-110737175:+|nuORF	REV__ENST00000451085.5_1_7:110731500-110737175:+|nuORF	MSMS	HCT116MG_D190212_S2	2	579.293212890625	2	579.292902	1156.57125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.364	1	11.082	10.582	11.582	-0.28186								0	0	0	0.7701	1	3657	3657		0.52476	0	1		+		5001	15711	2687	2714	4916	4916					-0.0007713314641932811
CVHPHPAGRP	10	Unmodified	_CVHPHPAGRP_					0	0	0		nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-5|MAEA	MULTI-MSMS	HCT116MG_D190212_S4	4	536.2693481445312	2	535.76926	1069.52397	-0.19875	-0.00010648	-0.71182	-0.00038137	-0.91057	-0.00048785	535.7689328208858	15.737	1.004	15.575	15.172	16.176	-0.16173					30	19	2	0	0	0	0.82332	1	5035	5035		10.074	2.1638	1	1397300			5002	9398	2688	2715	4917	4917					-0.00801412417422398
CVKKKLSVV	9	Unmodified	_CVKKKLSVV_					0	0	0		ENST00000338447.10_1_11:63706445-63713674:+|nuORF	ENST00000338447.10_1_11:63706445-63713674:+|nuORF	ENST00000338447.10_1_11:63706445-63713674:+|nuORF	MSMS	HCT116MG_D190212_S1	1	502.3215026855469	2	502.320263	1002.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.776	1	53.776	53.276	54.276	0								0	0	0	0.76973	1	20603	20603		1.8442	1.1539	1				5003	7201	2689	2716	4918	4918					0.12476440881641793
CVKYILEVIV	10	Unmodified	_CVKYILEVIV_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MSMS	HCT116MG_D190212_S1	1	589.8465576171875	2	589.84631	1177.67807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.021	1	54.021	53.521	54.521	0								0	0	0	0.94551	1	20704	20704		5.7319	0.83484	1		+		5004	11885	2690	2717	4919	4919					0.0963355950470941
CVLILNQE	8	Unmodified	_CVLILNQE_					0	0	0			REV__ZFYVE16|p.N22_P23insLILVC|1|0.03|ENSG00000039319|chr5:80434212-80434213|-/TTTAATTCTTGTATG|inframe_insertion	REV__ZFYVE16|p.N22_P23insLILVC|1|0.03|ENSG00000039319|chr5:80434212-80434213|-/TTTAATTCTTGTATG|inframe_insertion	MULTI-MSMS	HCT116MG_D190212_S2	2	466.2500305175781	2	466.249503	930.484453	0.271	0.00012635	-0.994	-0.00046345	-0.723	-0.0003371	466.2497092688305	61.461	1.8385	61.319	60.637	62.475	-0.14227					96	35	4	0	0	0	0.87576	1	23766	23766		0.79363	0.10326	1	7710300	+		5005	18070	2691	2718	4920	4920					0.016430227884939086
CVSGHPTMTQY	11	Unmodified	_CVSGHPTMTQY_					0	0	0		nc|ENSG00000145088|Q96CJ1-2|EAF2;ENSG00000145088|ENST00000273668|EAF2	nc|ENSG00000145088|Q96CJ1-2|EAF2	nc|ENSG00000145088|Q96CJ1-2|EAF2	MULTI-MSMS	HCT116MG_D190212_S1	1	612.3175659179688	2	612.262816	1222.51108	0.40919	0.00025053	-0.26121	-0.00015993	0.14798	9.0601E-05	612.26264396706	36.471	0.58101	36.471	36.098	36.679	0					25	10	3	0	0	0	0.60935	1	13597	13597		34.402	0.29928	1	25682000			5006	3895	2692	2719	4921	4921					-0.09127656382474925
CVVPPEAV	8	Unmodified	_CVVPPEAV_					0	0	0			REV__ZNF492|p.S128Pfs*9|1|0.03|ENSG00000229676|chr19:22664049-22664050|-/TCCACATT|frameshift_variant	REV__ZNF492|p.S128Pfs*9|1|0.03|ENSG00000229676|chr19:22664049-22664050|-/TCCACATT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	407.2116394042969	2	407.212389	812.410226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.434	1	58.264	57.764	58.764	-0.1703								0	0	0	0.8837	1	22584	22584		2.8892	0	1		+		5007	14317	2693	2720	4922	4922					-0.003483203030327786
CWFCHCCFG	9	Unmodified	_CWFCHCCFG_					0	0	0			REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|128|2|anti-sense	REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|128|2|anti-sense	MSMS	HCT116MG_D190212_S4	4	369.1216735839844	3	369.121883	1104.34382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.441	1	12.272	11.772	12.772	-0.16903								0	0	0	0.77025	1	3864	3864		0	0	1		+		5008	16952	2694	2721	4923	4923					-0.20417918732619
CWFCHCCFG	9	Unmodified	_CWFCHCCFG_					0	0	0			REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|128|2|anti-sense	REV__L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|128|2|anti-sense	MSMS	HCT116MG_D190212_S4	4	369.1214904785156	3	369.121883	1104.34382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.495	1	13.332	12.832	13.832	-0.16233								0	0	0	0.77025	1	4234	4234		0	0	1		+		5009	16952	2694	2721	4924	4924					-0.20417918732619
CWIPLLKA	8	Unmodified	_CWIPLLKA_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2;IGHMBP2|p.C395Y|1|0.13|ENSG00000132740|chr11:68929306-68929306|G/A|missense_variant	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MSMS	HCT116MG_D190212_S2	2	472.27484130859375	2	472.275324	942.536095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.603	1	61.461	60.961	61.961	-0.14227								0	0	0	0.8837	1	23863	23863		0.79363	0	1				5010	3206	2695	2722	4925	4925					0.06252811273066072
CWWERRYKRRP	11	Unmodified	_CWWERRYKRRP_					0	0	0		ENST00000492991.5_1_9:132595938-132597442:-|nuORF	ENST00000492991.5_1_9:132595938-132597442:-|nuORF	ENST00000492991.5_1_9:132595938-132597442:-|nuORF	MSMS	HCT116MG_D190212_S2	2	545.95166015625	3	545.952766	1634.83647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.564	1	15.237	14.737	15.737	-0.32684								0	0	0	0.9619	1	5180	5180		0.094841	0	1				5011	8352	2696	2723	4926	4926					0.0444429125636816
CYCHTCSD	8	Unmodified	_CYCHTCSD_					0	0	0			REV__CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant	REV__CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	466.1400146484375	2	466.140781	930.267008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3179	1	1.3047	0.80471	1.8047	-0.013221								0	0	0	0.8837	1	431	431		0	0	1		+		5012	10294	2697	2724	4927	4927					-0.20091438748090695
CYCHTCSD	8	Unmodified	_CYCHTCSD_					0	0	0			REV__CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant	REV__CRIM1|p.P856Lfs*67|1|0.19|ENSG00000150938|chr2:36537485-36537485|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	466.1388244628906	2	466.140781	930.267008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.663	1	2.3984	1.8984	2.8984	-0.26456								0	0	0	0.8837	1	811	811		0	0	1		+		5013	10294	2697	2724	4928	4928					-0.20091438748090695
CYGLGPGH	8	Unmodified	_CYGLGPGH_					0	0	0			REV__ENST00000578839.5_1_17:61562212-61574724:+|nuORF	REV__ENST00000578839.5_1_17:61562212-61574724:+|nuORF	MSMS	HCT116MG_D190212_S3	3	402.1800842285156	2	402.178881	802.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.135	1	10.167	9.6672	10.667	0.032559								0	0	0	0.8837	1	3063	3063		0.79363	0	1		+		5014	16614	2698	2725	4929	4929					-0.0658693079412842
CYGLGPGH	8	Unmodified	_CYGLGPGH_					0	0	0			REV__ENST00000578839.5_1_17:61562212-61574724:+|nuORF	REV__ENST00000578839.5_1_17:61562212-61574724:+|nuORF	MSMS	HCT116MG_D190212_S4	4	402.1796875	2	402.178881	802.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3992	1	9.1895	8.6895	9.6895	-0.20971								0	0	0	0.8837	1	2873	2873		0.79363	0	1		+		5015	16614	2698	2725	4930	4930					-0.0658693079412842
CYLMGMPH	8	Unmodified	_CYLMGMPH_					0	0	0			REV__NUP210L|p.R484C|1|0.35|ENSG00000143552|chr1:154118685-154118685|G/A|missense_variant	REV__NUP210L|p.R484C|1|0.35|ENSG00000143552|chr1:154118685-154118685|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	476.19842529296875	2	476.197902	950.38125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.61493	1	0.61493	0.11493	1.1149	0								0	0	0	0.8837	1	190	190		0.79363	0	1		+		5016	17358	2699	2726	4931	4931					-0.09592504195313722
CYNCRCHHHQC	11	Unmodified	_CYNCRCHHHQC_					0	0	0		SHROOM4|p.G1268Rfs*28|1|0.77|ENSG00000158352|chrX:50602774-50602775|-/G|frameshift_variant;nc|ENSG00000158352|Q9ULL8-2|SHROOM4;ENSG00000158352|ENST00000376020|SHROOM4	SHROOM4|p.G1268Rfs*28|1|0.77|ENSG00000158352|chrX:50602774-50602775|-/G|frameshift_variant	SHROOM4|p.G1268Rfs*28|1|0.77|ENSG00000158352|chrX:50602774-50602775|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	702.2521362304688	2	702.252268	1402.48998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4432	1	6.1863	5.6863	6.6863	-0.25684								0	0	0	0.96208	1	1972	1972		0	0	1				5017	4368	2700	2727	4932	4932					-0.19516268234633571
CYQSQKLWQI	10	Unmodified	_CYQSQKLWQI_					0	0	0		ENSG00000189299|ENST00000339140|FOXR2	ENSG00000189299|ENST00000339140|FOXR2	ENSG00000189299|ENST00000339140|FOXR2	MSMS	HCT116MG_D190212_S4	4	432.8851318359375	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7104	1	4.4458	3.9458	4.9458	-0.26456								0	0	0	0.97045	1	1440	1440		0.15932	0	1				5018	6031	2701	2728	4933	4933					-0.002748713086020871
DAAELYLWQCL	11	Unmodified	_DAAELYLWQCL_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MSMS	HCT116MG_D190212_S4	4	662.8150024414062	2	662.815738	1323.61692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.121	1	17.946	17.446	18.446	-0.17501								0	0	0	0.88801	1	6060	6060		21.537	1.1224	1		+		5019	10572	2702	2729	4934	4934					-0.03193997265361759
DAAGVLLRFS	10	Unmodified	_DAAGVLLRFS_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MSMS	HCT116MG_D190212_S3	3	524.7927856445312	2	524.792924	1047.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.689	1	25.561	25.061	26.061	-0.12795								0	0	0	0.89062	1	9183	9183		17.113	0.1706	1		+		5020	10335	2703	2730	4935	4935					0.049411453345555856
DAAPGPQSSAP	11	Unmodified	_DAAPGPQSSAP_					0	0	0		PPP1R15A|p.E283D|1|0.33|ENSG00000087074|chr19:48874082-48874082|A/T|missense_variant	PPP1R15A|p.E283D|1|0.33|ENSG00000087074|chr19:48874082-48874082|A/T|missense_variant	PPP1R15A|p.E283D|1|0.33|ENSG00000087074|chr19:48874082-48874082|A/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	499.2325744628906	2	499.232896	996.451239	0.30496	0.00015224	-0.78223	-0.00039052	-0.47728	-0.00023827	499.2324862337005	20.378	0.20827	20.426	20.311	20.52	0.048107					6	3	2	0	0	0	0.32604	1	7067	7067		61.602	15.862	1	3897000			5021	9770	2704	2731	4936	4936					-0.04712887729863269
DAAPGPQSSAP	11	Unmodified	_DAAPGPQSSAP_					0	0	0		PPP1R15A|p.E283D|1|0.33|ENSG00000087074|chr19:48874082-48874082|A/T|missense_variant	PPP1R15A|p.E283D|1|0.33|ENSG00000087074|chr19:48874082-48874082|A/T|missense_variant	PPP1R15A|p.E283D|1|0.33|ENSG00000087074|chr19:48874082-48874082|A/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	499.2330017089844	2	499.232896	996.451239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.151	1	21.177	20.677	21.677	0.025614								0	0	0	0.28372	1	7356	7356		61.602	13.87	1				5022	9770	2704	2731	4937	4937					-0.04712887729863269
DAAPGPQSSAP	11	Unmodified	_DAAPGPQSSAP_					0	0	0		PPP1R15A|p.E283D|1|0.33|ENSG00000087074|chr19:48874082-48874082|A/T|missense_variant	PPP1R15A|p.E283D|1|0.33|ENSG00000087074|chr19:48874082-48874082|A/T|missense_variant	PPP1R15A|p.E283D|1|0.33|ENSG00000087074|chr19:48874082-48874082|A/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	499.232896	996.451239	0.40526	0.00020232	-0.036495	-1.8219E-05	0.36876	0.0001841	499.2327061884731	20.676	0.2107	20.296	20.183	20.394	-0.37949	-0.070789	0.00063698	NaN	61.602	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4059700			5023	9770	2704	2731							-0.04712887729863269
DAAVTCSKESL	11	Unmodified	_DAAVTCSKESL_					0	0	0		nc|ENSG00000137103|A6NDV4-3|TMEM8B;nc|ENSG00000137103|A6NDV4-2|TMEM8B;nc|ENSG00000137103|A6NDV4|TMEM8B;ENSG00000137103|ENST00000643932|TMEM8B	nc|ENSG00000137103|A6NDV4-3|TMEM8B	nc|ENSG00000137103|A6NDV4-3|TMEM8B	MULTI-MSMS	HCT116MG_D190212_S2	2	563.2984008789062	2	562.268621	1122.52269	0.42348	0.00023811	0.17655	9.9266E-05	0.60002	0.00033737	562.2685827400712	54.731	0.46025	54.542	54.252	54.713	-0.18914					15	8	3	0	0	0	0.73844	1	21007	21007		7.609	1.4032	1	89569000			5024	3461	2705	2732	4938	4938					-0.033671360874905076
DAEDLVFV	8	Unmodified	_DAEDLVFV_					0	0	0			REV__ENST00000567012.5_1_16:70398922-70400166:+|nuORF	REV__ENST00000567012.5_1_16:70398922-70400166:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	907.4410400390625	1	907.44074	906.433463	0.6827	0.00061951	0.65136	0.00059107	1.3341	0.0012106	907.4410392032386	55.14	0.31392	54.848	54.717	55.031	-0.2918					7	5	2	0	0	0	0.23352	1	20920	20920		67.035	10.494	1	5359200	+		5025	10346	2706	2733	4939	4939					-0.023496029847024147
DAFCCVCLDD	10	Unmodified	_DAFCCVCLDD_					0	0	0		BRPF3|p.P854Rfs*6|3|0.23|ENSG00000096070|chr6:36213952-36213952|C/-|frameshift_variant;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3;BRPF3|p.K1034Nfs*18|1|0.36|ENSG00000096070|chr6:36222178-36222178|C/-|frameshift_variant;ENSG00000096070|ENST00000357641|BRPF3	BRPF3|p.P854Rfs*6|3|0.23|ENSG00000096070|chr6:36213952-36213952|C/-|frameshift_variant	BRPF3|p.P854Rfs*6|3|0.23|ENSG00000096070|chr6:36213952-36213952|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	552.1966552734375	2	552.195753	1102.37695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2837	1	3.2837	2.7837	3.7837	0								0	0	0	0.96937	1	990	990		0.40072	0	1				5026	279	2707	2734	4940	4940					-0.1701405819953834
DAFRRRRWRRR	11	Unmodified	_DAFRRRRWRRR_					0	0	0		ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-7|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-15|DYSF;DYSF|p.F1960Lfs*6|1|0.23|ENSG00000135636|chr2:71679165-71679165|T/-|frameshift_variant;DYSF|p.F1290Lfs*55|1|0.1|ENSG00000135636|chr2:71601522-71601522|T/-|frameshift_variant	ENSG00000135636|ENST00000410020|DYSF	ENSG00000135636|ENST00000410020|DYSF	MULTI-MSMS	HCT116MG_D190212_S1	1	544.8019409179688	3	544.317318	1629.93013	0.61963	0.00033728	-1.4882	-0.00081005	-0.86857	-0.00047278	544.6510801674635	54.714	0.35612	54.714	54.587	54.943	0					8	6	2	0	0	0	0.74191	2	20943	20943;21024		0	0	1	23521000			5027	3365	2708	2735	4941;4942	4941					0.14035771473641034
DAGQDPCLRPG	11	Unmodified	_DAGQDPCLRPG_					0	0	0		ENST00000489097.5_1_1:6527238-6527559:-|nuORF	ENST00000489097.5_1_1:6527238-6527559:-|nuORF	ENST00000489097.5_1_1:6527238-6527559:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	564.7579345703125	2	564.758755	1127.50296	0.37176	0.00020996	-0.098448	-5.56E-05	0.27331	0.00015436	564.7583887216898	21.411	0.41529	21.192	21.01	21.426	-0.21832					13	7	3	0	0	0	0.7259	1	7398	7398		12.241	0	1	3853900			5028	8322	2709	2736	4943	4943					-0.05569467307623199
DAGRKYRF	8	Unmodified	_DAGRKYRF_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant;TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant;TNXB|p.G2152Afs*46|1|0.18|ENSG00000168477|chr6:32067750-32067750|C/-|frameshift_variant	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MSMS	HCT116MG_D190212_S3	3	506.7713928222656	2	506.769783	1011.52501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5559	1	9.582	9.082	10.082	0.026101								0	0	0	0.8837	1	2890	2890		0.69038	0.088878	1				5029	5012	2710	2737	4944	4944					0.019711252231331855
DAHIYSELPAS	11	Unmodified	_DAHIYSELPAS_					0	0	0		ENST00000393992.5_2_16:67244178-67260689:-|nuORF	ENST00000393992.5_2_16:67244178-67260689:-|nuORF	ENST00000393992.5_2_16:67244178-67260689:-|nuORF	MSMS	HCT116MG_D190212_S4	4	601.7880859375	2	601.788035	1201.56152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.895	1	32.515	32.015	33.015	-0.38048								0	0	0	0.92235	1	11999	11999		17.113	3.605	1				5030	7630	2711	2738	4945	4945					-0.03120087461456933
DAIITPLMR	9	Unmodified	_DAIITPLMR_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.7456665039062	2	515.291702	1028.56885	-0.0085819	-4.4222E-06	0.63834	0.00032893	0.62976	0.00032451	515.2921850226328	39.889	0.25792	39.816	39.687	39.945	-0.072838					7	4	2	0	0	0	0.20889	1	15011	15011		30.637	5.2372	1	23310000	+		5031	13095	2712	2739	4946	4946					0.05570973605267682
DAKVVRQSQEI	11	Unmodified	_DAKVVRQSQEI_					0	0	0			REV__ENSG00000157869|ENST00000330852|RAB28	REV__ENSG00000157869|ENST00000330852|RAB28	MULTI-MSMS	HCT116MG_D190212_S1	1	637.7879638671875	2	636.848958	1271.68336	0.77269	0.00049209	-0.20852	-0.00013279	0.56417	0.00035929	636.849130807842	16.895	0.15648	16.895	16.785	16.942	0					4	2	2	0	0	0	0.74191	1	5680	5680		2.7352	0.89096	1	675650	+		5032	12767	2713	2740	4947	4947					0.058389546208900356
DALRHRHRL	9	Unmodified	_DALRHRHRL_					0	0	0		ENST00000379339.5_2_1:1017356-1017647:-|nuORF	ENST00000379339.5_2_1:1017356-1017647:-|nuORF	ENST00000379339.5_2_1:1017356-1017647:-|nuORF	MSMS	HCT116MG_D190212_S1	1	587.3394165039062	2	587.33923	1172.66391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.888	1	47.888	47.388	48.388	0								0	0	0	0.76669	1	18207	18207		12.532	0.29089	1				5033	7551	2714	2741	4948	4948					0.08448087911301627
DAPAGSPQASP	11	Unmodified	_DAPAGSPQASP_					0	0	0		RGL3|p.P571Q|1|0.5|ENSG00000205517|chr19:11399889-11399889|G/T|missense_variant	RGL3|p.P571Q|1|0.5|ENSG00000205517|chr19:11399889-11399889|G/T|missense_variant	RGL3|p.P571Q|1|0.5|ENSG00000205517|chr19:11399889-11399889|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	997.4591674804688	1	997.458515	996.451239	0.62971	0.00062811	-0.16777	-0.00016734	0.46194	0.00046077	997.4582983229822	21.359	0.41548	21.14	20.958	21.374	-0.21832					14	7	3	0	0	0	0.35116	1	7363	7363		59.368	9.8411	1	3829700			5034	18101	2715	2742	4949	4949					-0.04712887729863269
DAPAGSPQASP	11	Unmodified	_DAPAGSPQASP_					0	0	0		RGL3|p.P571Q|1|0.5|ENSG00000205517|chr19:11399889-11399889|G/T|missense_variant	RGL3|p.P571Q|1|0.5|ENSG00000205517|chr19:11399889-11399889|G/T|missense_variant	RGL3|p.P571Q|1|0.5|ENSG00000205517|chr19:11399889-11399889|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	499.2337341308594	2	499.232896	996.451239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.333	1	21.119	20.619	21.619	-0.21402								0	0	0	0.3401	1	7358	7358		55.235	5.7074	1				5035	18101	2715	2742	4950	4950					-0.04712887729863269
DAPAGSPQASP	11	Unmodified	_DAPAGSPQASP_					0	0	0		RGL3|p.P571Q|1|0.5|ENSG00000205517|chr19:11399889-11399889|G/T|missense_variant	RGL3|p.P571Q|1|0.5|ENSG00000205517|chr19:11399889-11399889|G/T|missense_variant	RGL3|p.P571Q|1|0.5|ENSG00000205517|chr19:11399889-11399889|G/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	997.458515	996.451239	0.47861	0.00047739	0.13941	0.00013905	0.61802	0.00061645	997.4587119663134	21.497	0.25928	21.113	20.909	21.168	-0.38382	-0.013587	0.0002092	NaN	59.368	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6132300			5036	18101	2715	2742							-0.04712887729863269
DAPCAQSGPRV	11	Unmodified	_DAPCAQSGPRV_					0	0	0			REV__ENSG00000130701|ENST00000252998|RBBP8NL	REV__ENSG00000130701|ENST00000252998|RBBP8NL	MSMS	HCT116MG_D190212_S4	4	550.7597045898438	2	550.761297	1099.50804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.102	1	15.939	15.439	16.439	-0.16364								0	0	0	0.95113	1	5245	5245		5.7319	1.4026	1		+		5037	11936	2716	2743	4951	4951					-0.0377316344497558
DAPTLKCNRVL	11	Unmodified	_DAPTLKCNRVL_					0	0	0			REV__SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	REV__SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	615.7264404296875	2	615.337172	1228.65979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.661	1	36.546	36.046	37.046	-0.11478								0	0	0	0.94538	1	13716	13716		8.7454	0.83525	1		+		5038	14116	2717	2744	4952	4952					0.0546081758272976
DAQKQYHKIM	10	Unmodified	_DAQKQYHKIM_					0	0	0			REV__LYN|p.D206N|1|0.18|ENSG00000254087|chr8:55952094-55952094|G/A|missense_variant	REV__LYN|p.D206N|1|0.18|ENSG00000254087|chr8:55952094-55952094|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	631.3187866210938	2	631.321522	1260.62849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.339	1	21.954	21.454	22.454	-0.3852								0	0	0	0.8981	1	7909	7909		16.149	0.90062	1		+		5039	14390	2718	2745	4953	4953					0.008602445486076249
DARHVVKVEY	10	Unmodified	_DARHVVKVEY_					0	0	0		nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2;VRK2|p.I420Sfs*45|1|0.11|ENSG00000028116|chr2:58159419-58159419|A/-|frameshift_variant;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	nc|ENSG00000028116|Q86Y07-5|VRK2	MSMS	HCT116MG_D190212_S2	2	608.3295288085938	2	608.327662	1214.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.979	1	34.821	34.321	35.321	-0.15834								0	0	0	0.92272	1	13032	13032		10.824	3.5347	1				5040	960	2719	2746	4954	4954					0.04203604283338791
DASNAVLDL	9	Unmodified	_DASNAVLDL_					0	0	0			REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2;REV__ENSG00000115896|ENST00000428675|PLCL1	REV__ENSG00000115896|ENST00000428675|PLCL1	MULTI-MSMS	HCT116MG_D190212_S3	3	459.2325744628906	2	459.232364	916.450176	0.41246	0.00018942	-0.29113	-0.0001337	0.12133	5.5717E-05	459.23219569033836	39.251	0.31955	38.95	38.82	39.14	-0.30137					8	5	2	0	0	0	0.37539	1	14593	14593		24.021	2.2739	1	6075100	+		5041	12686;11562	2720	2747	4955	4955					-0.011391020987502998
DASNAVLDL	9	Unmodified	_DASNAVLDL_					0	0	0			REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2;REV__ENSG00000115896|ENST00000428675|PLCL1	REV__ENSG00000115896|ENST00000428675|PLCL1	MULTI-MSMS	HCT116MG_D190212_S4	4	459.2329406738281	2	459.232364	916.450176	0.17881	8.2113E-05	1.2116	0.00055641	1.3904	0.00063852	459.23302354491847	39.369	0.17281	38.989	38.884	39.057	-0.38055					5	3	2	0	0	0	0.45867	1	14482	14482		19.257	3.4098	1	2777900	+		5042	12686;11562	2720	2747	4956	4956					-0.011391020987502998
DASRPCRFH	9	Unmodified	_DASRPCRFH_					0	0	0			REV__ENSG00000159459|ENST00000290650|UBR1	REV__ENSG00000159459|ENST00000290650|UBR1	MULTI-MSMS	HCT116MG_D190212_S2	2	544.7562866210938	2	544.75635	1087.49815	0.3588	0.00019546	-0.058482	-3.1858E-05	0.30032	0.0001636	544.756074217949	39.67	0.35719	39.592	39.428	39.785	-0.077835					10	6	2	0	0	0	0.43775	1	14972	14972		20.454	1.1966	1	24719000	+		5043	12805	2721	2748	4957	4957					-0.04210306659706475
DASRTYSTAPG	11	Unmodified	_DASRTYSTAPG_					0	0	0		SP140|p.A258S|1|0.41|ENSG00000079263|chr2:230247945-230247945|G/T|missense_variant	SP140|p.A258S|1|0.41|ENSG00000079263|chr2:230247945-230247945|G/T|missense_variant	SP140|p.A258S|1|0.41|ENSG00000079263|chr2:230247945-230247945|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	563.280517578125	2	563.262185	1124.50982	0.33132	0.00018662	-0.13172	-7.419E-05	0.19961	0.00011243	563.2621051913544	18.225	0.93714	18.302	17.633	18.57	0.076334					32	17	3	0	0	0	0.31184	1	5987	5987		23.79	0	1	4962900			5044	18223	2722	2749	4958	4958					-0.047458311554009924
DAVAPAAGFRC	11	Carbamidomethyl (C)	_DAVAPAAGFRC(Carbamidomethyl (C))_	DAVAPAAGFRC(1)		DAVAPAAGFRC(44)		0	1	0		ENSG00000198597|ENST00000355537|ZNF536;ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant;ZNF536|p.P299Afs*74|1|0.33|ENSG00000198597|chr19:30444453-30444454|-/A|frameshift_variant	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MULTI-MSMS	HCT116MG_D190212_S3	3	567.7744750976562	2	567.771665	1133.52878	0.54155	0.00030748	3.1759	0.0018032	3.7174	0.0021106	567.7746767751217	27.523	1.6663	27.335	26.476	28.142	-0.18847					41	31	2	0	0	0	0.52486	1	9870	9870		43.772	7.2662	1	10859000			5045	6245	2723	2750	4959	4959	38				-0.032645730653030114
DAVAPRKR	8	Unmodified	_DAVAPRKR_					0	0	0		ENSG00000203896|ENST00000309546|LIME1;ENST00000465591.1_1_20:62368003-62369414:+|nuORF	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	HCT116MG_D190212_S4	4	456.7724609375	2	456.772326	911.530098	0.052707	2.4075E-05	0.010915	4.9858E-06	0.063622	2.9061E-05	456.77223386445604	49.348	1.7456	48.986	48.46	50.205	-0.36234					96	37	5	0	0	0	0.82475	1	18684	18684		8.5933	0.68312	1	346040000			5046	6315	2724	2751	4960	4960					0.07079429085752054
DAVPVGRADP	10	Unmodified	_DAVPVGRADP_					0	0	0			REV__ENSG00000125650|ENST00000245810|PSPN	REV__ENSG00000125650|ENST00000245810|PSPN	MULTI-MSMS	HCT116MG_D190212_S4	4	498.7591247558594	2	498.759081	995.503609	0.42537	0.00021216	-0.24343	-0.00012141	0.18194	9.0743E-05	498.7590468127309	29.304	0.36355	28.955	28.825	29.189	-0.34921					8	6	2	0	0	0	0.37752	1	10604	10604		43.772	1.8168	1	3584900	+		5047	11812	2725	2752	4961	4961					0.005676954037539872
DAVQSFYGAP	10	Unmodified	_DAVQSFYGAP_					0	0	0			REV__ENST00000481436.5_1_5:177642388-177652501:-|nuORF	REV__ENST00000481436.5_1_5:177642388-177652501:-|nuORF	MSMS	HCT116MG_D190212_S4	4	527.7442016601562	2	527.745639	1053.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.401	1	21.183	20.683	21.683	-0.21832								0	0	0	0.76907	1	7386	7386		32.786	4.2988	1		+		5048	15956	2726	2753	4962	4962					-0.047874132074412046
DAVQVQEYRE	10	Unmodified	_DAVQVQEYRE_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	HCT116MG_D190212_S4	4	619.2976684570312	2	618.796392	1235.57823	0.16996	0.00010517	-0.042529	-2.6317E-05	0.12743	7.8855E-05	618.7961926755298	17.533	1.2961	17.362	16.448	17.744	-0.17046					46	24	3	0	0	0	0.83158	1	5961	5961		9.3831	0	1	2850000			5049	1020	2727	2754	4963	4963					-0.030135865755482882
DAVQVQEYREA	11	Unmodified	_DAVQVQEYREA_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	HCT116MG_D190212_S4	4	654.8167114257812	2	654.314948	1306.61534	0.21848	0.00014296	0.26071	0.00017059	0.47919	0.00031354	654.3150712610271	17.313	1.4001	17.142	16.448	17.848	-0.17046					43	26	2	0	0	0	0.72218	1	5625	5625		13.615	13.615	1	3583100			5050	1020	2728	2755	4964	4964					-0.025699150297668893
DAVSEPHGA	9	Unmodified	_DAVSEPHGA_					0	0	0		ENST00000468963.1_1_9:139301473-139302406:-|nuORF	ENST00000468963.1_1_9:139301473-139302406:-|nuORF	ENST00000468963.1_1_9:139301473-139302406:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	441.7012634277344	2	441.701232	881.38791	-0.17006	-7.5114E-05	-0.12782	-5.6459E-05	-0.29788	-0.00013157	441.70110383074467	17.096	0.62099	16.927	16.605	17.226	-0.1693					17	11	2	0	0	0	0.39063	1	5698	5698		23.148	0	1	2716600			5051	8133	2729	2756	4965	4965					-0.05752828447089087
DAVSSTPFLKY	11	Unmodified	_DAVSSTPFLKY_					0	0	0			REV__ENSG00000117016|ENST00000372684|RIMS3	REV__ENSG00000117016|ENST00000372684|RIMS3	MULTI-MSMS	HCT116MG_D190212_S2	2	614.3145141601562	2	614.316428	1226.6183	0.39523	0.0002428	0.57997	0.00035628	0.9752	0.00059908	614.8196716633469	19.354	0.36462	18.984	18.784	19.148	-0.3695					15	6	3	0	0	0	0.7259	1	6690	6690		12.241	2.8575	1	28523000	+		5052	11605	2730	2757	4966	4966					0.014059600950531603
DAWREYVFWKN	11	Unmodified	_DAWREYVFWKN_					0	0	0		ENST00000541972.5_1_12:7651687-7653742:-|nuORF	ENST00000541972.5_1_12:7651687-7653742:-|nuORF	ENST00000541972.5_1_12:7651687-7653742:-|nuORF	MSMS	HCT116MG_D190212_S4	4	757.366943359375	2	757.364776	1512.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.563	1	34.177	33.677	34.677	-0.38558								0	0	0	0.94864	1	12625	12625		5.2969	0.39987	1				5053	8697	2731	2758	4967	4967					-0.020850526251479096
DAWYPHNAQ	9	Unmodified	_DAWYPHNAQ_					0	0	0			REV__nc|ENSG00000100038|O95985-3|TOP3B	REV__nc|ENSG00000100038|O95985-3|TOP3B	MULTI-SECPEP	HCT116MG_D190212_S2	2	551.749755859375	2	551.241055	1100.46756	-0.037897	-2.089E-05	0.63344	0.00034918	0.59554	0.00032829	551.2416571175819	18.502	0.2091	18.138	18.008	18.217	-0.36325					7	3	3	0	0	0	0.25874	1	6315	6315		0.40072	0	1	4582300	+		5054	11061	2732	2759	4968	4968					-0.07865761773109625
DAYAGKEYII	10	Unmodified	_DAYAGKEYII_					0	0	0		ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	MSMS	HCT116MG_D190212_S3	3	571.973876953125	2	571.790047	1141.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.588	1	32.306	31.806	32.806	-0.28212								0	0	0	0.91638	1	11949	11949		12.241	0	1				5055	2780	2733	2760	4969	4969					0.0004200203222808341
DAYFQLCQDP	10	Unmodified	_DAYFQLCQDP_					0	0	0		CCT8L2|p.I552Sfs*4|2|0.37|ENSG00000198445|chr22:16590897-16590897|T/-|frameshift_variant;ENSG00000198445|ENST00000359963|CCT8L2	CCT8L2|p.I552Sfs*4|2|0.37|ENSG00000198445|chr22:16590897-16590897|T/-|frameshift_variant	CCT8L2|p.I552Sfs*4|2|0.37|ENSG00000198445|chr22:16590897-16590897|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	600.2847290039062	2	600.255514	1198.49647	1.1479	0.00068904	0.56188	0.00033727	1.7098	0.0010263	600.2557877116167	18.653	0.62266	18.472	18.097	18.719	-0.18052					16	11	2	0	0	0	0.84626	1	6354	6354		8.1555	1.4324	1	1874800			5056	366	2734	2761	4970	4970					-0.09483405258970379
DCDGNPFIA	9	Unmodified	_DCDGNPFIA_					0	0	0			REV__ENSG00000204128|ENST00000373640|C2orf72	REV__ENSG00000204128|ENST00000373640|C2orf72	MSMS	HCT116MG_D190212_S2	2	476.1985168457031	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.141	1	63.012	62.512	63.512	-0.12924								0	0	0	0.77008	1	24481	24481		0.6015	0.6015	1		+		5057	14180	2735	2762	4971	4971					-0.09679304039013914
DCETCEHS	8	Unmodified	_DCETCEHS_					0	0	0			REV__ZNF260|p.G61D|1|0.19|ENSG00000254004|chr19:36515057-36515057|C/T|missense_variant	REV__ZNF260|p.G61D|1|0.19|ENSG00000254004|chr19:36515057-36515057|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	462.1466369628906	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1769	1	8.9219	8.4219	9.4219	-0.25508								0	0	0	0.8837	1	2868	2868		0.79363	0	1		+		5058	18075	2736	2763	4972	4972					-0.18456704084189823
DCGDWSDESDC	11	Unmodified	_DCGDWSDESDC_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MSMS	HCT116MG_D190212_S1	1	616.179443359375	2	616.179343	1230.34413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.394	1	64.394	63.894	64.894	0								0	0	0	0.96208	1	24840	24840		0	0	1				5059	3291	2737	2764	4973	4973					-0.261825937886897
DCHCENAK	8	Unmodified	_DCHCENAK_					0	0	0		nc|ENSG00000112038|P35372-9|OPRM1	nc|ENSG00000112038|P35372-9|OPRM1	nc|ENSG00000112038|P35372-9|OPRM1	MSMS	HCT116MG_D190212_S2	2	460.17236328125	2	460.173469	918.332386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.618	1	12.32	11.82	12.82	-0.29721								0	0	0	0.8837	1	4128	4128		0.69038	0	1				5060	9426	2738	2765	4974	4974					-0.13004701230727278
DCILKLLAK	9	Unmodified	_DCILKLLAK_					0	0	0			REV__ENSG00000129696|ENST00000431156|TTI2	REV__ENSG00000129696|ENST00000431156|TTI2	MSMS	HCT116MG_D190212_S1	1	509.0001525878906	2	508.81227	1015.60999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.851	1	36.851	36.351	37.351	0								0	0	0	0.76575	1	13750	13750		15.847	0	1		+		5061	11899	2739	2766	4975	4975					0.10280734644720724
DCLSEASW	8	Unmodified	_DCLSEASW_					0	0	0		MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	455.6841735839844	2	455.684193	909.353833	-0.21609	-9.8471E-05	0.2755	0.00012554	0.05941	2.7072E-05	455.6843541333542	43.127	0.46254	43.053	42.84	43.303	-0.073372					12	8	2	0	0	0	0.62424	1	16387	16387		30.225	10.786	1	13577000			5062	2157	2740	2767	4976	4976					-0.10446992930360466
DCLSEASW	8	Unmodified	_DCLSEASW_					0	0	0		MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	455.68414306640625	2	455.684193	909.353833	0.33405	0.00015222	-0.21394	-9.7487E-05	0.12012	5.4735E-05	455.68405506458845	43.429	0.40031	43.124	42.945	43.345	-0.3051					13	7	2	0	0	0	0.62424	1	16214	16214		30.225	3.8835	1	8231100			5063	2157	2740	2767	4977	4977					-0.10446992930360466
DCLSEASW	8	Unmodified	_DCLSEASW_					0	0	0		MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	455.684193	909.353833	0.33405	0.00015222	-0.21394	-9.7487E-05	0.12012	5.4735E-05	455.68405506458845	43.429	0.40031	43.124	42.945	43.345	-0.3051	0.019254	-0.00025911	NaN	30.225	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8231100			5064	2157	2740	2767							-0.10446992930360466
DCLSEASW	8	Unmodified	_DCLSEASW_					0	0	0		MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	455.684193	909.353833	0.21361	9.7337E-05	-0.24332	-0.00011088	-0.029712	-1.3539E-05	455.68400970663123	43.512	0.24925	43.138	43.018	43.267	-0.37433	0.03245	-0.00028589	NaN	30.225	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6263800			5065	2157	2740	2767							-0.10446992930360466
DCSDNSDSDND	11	Unmodified	_DCSDNSDSDND_					0	0	0		ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENST00000598292.1_1_19:15511553-15512083:-|nuORF	ENSG00000011243|ENST00000397410|AKAP8L	ENSG00000011243|ENST00000397410|AKAP8L	MSMS	HCT116MG_D190212_S3	3	396.1187438964844	3	396.119411	1185.3364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.885	1	62.662	62.162	63.162	-0.22315								0	0	0	0.96208	1	24021	24021		0	0	1				5066	888	2741	2768	4978	4978					-0.24885029784627477
DCSTNCNG	8	Unmodified	_DCSTNCNG_					0	0	0		TENM1|p.P1166Qfs*6|1|0.82|ENSG00000009694|chrX:124497214-124497214|G/-|frameshift_variant;TENM1|p.L1382Ffs*3|1|0.63|ENSG00000009694|chrX:124422576-124422577|-/A|frameshift_variant;TENM1|p.M1863Wfs*25|1|0.38|ENSG00000009694|chrX:124392132-124392132|T/-|frameshift_variant;ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	TENM1|p.P1166Qfs*6|1|0.82|ENSG00000009694|chrX:124497214-124497214|G/-|frameshift_variant	TENM1|p.P1166Qfs*6|1|0.82|ENSG00000009694|chrX:124497214-124497214|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	407.12957763671875	2	407.128728	812.242902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.722	1	21.74	21.24	22.24	0.018446								0	0	0	0.8837	1	7583	7583		0.69038	0.16561	1				5067	868	2742	2769	4979	4979					-0.1707295591008915
DCVVPFLT	8	Unmodified	_DCVVPFLT_					0	0	0		ENST00000546481.1_1_12:57881846-57882986:+|nuORF;ENST00000550449.5_1_12:57881846-57883182:+|nuORF;ENST00000551842.5_1_12:57881873-57883359:+|nuORF;ENST00000553162.5_1_12:57881873-57883795:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1;ENSG00000166986|ENST00000262027|MARS1	ENST00000546481.1_1_12:57881846-57882986:+|nuORF	ENST00000546481.1_1_12:57881846-57882986:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	893.4443359375	1	893.443717	892.43644	1.0889	0.00097283	-0.25242	-0.00022552	0.83644	0.00074731	893.4435541297563	57.1	0.46725	56.921	56.739	57.207	-0.17904					20	8	4	0	0	0	0.28659	1	22043	22043		60.39	3.8483	1	239750000			5068	4897	2743	2770	4980	4980					-0.014080511315682998
DCYMRIWSL	9	Unmodified	_DCYMRIWSL_					0	0	0		DCAF4L2|p.T338M|2|0.34|ENSG00000176566|chr8:87872959-87872959|G/A|missense_variant	DCAF4L2|p.T338M|2|0.34|ENSG00000176566|chr8:87872959-87872959|G/A|missense_variant	DCAF4L2|p.T338M|2|0.34|ENSG00000176566|chr8:87872959-87872959|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	593.7724609375	2	593.772819	1185.53109	0.36811	0.00021858	-1.2443	-0.00073883	-0.87619	-0.00052026	593.7719063758873	39.033	0.25991	39.033	38.903	39.163	0					9	4	3	0	0	0	0.24895	1	14657	14657		36.127	6.2864	1	28966000			5069	645	2744	2771	4981	4981					-0.054258606518487795
DDDDDDDCDDD	11	Unmodified	_DDDDDDDCDDD_					0	0	0			REV__ENSG00000189269|ENST00000317749|DRICH1	REV__ENSG00000189269|ENST00000317749|DRICH1	MSMS	HCT116MG_D190212_S3	3	636.651123046875	2	636.651866	1271.28918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.994	1	41.691	41.191	42.191	-0.30257								0	0	0	0.96208	1	15630	15630		0	0	1		+		5070	13995	2745	2772	4982	4982					-0.3356135384628942
DDDDDGDEGE	10	Unmodified	_DDDDDGDEGE_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MSMS	HCT116MG_D190212_S2	2	541.159423828125	2	541.157445	1080.30034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.14274	1	0.1388	-0.3612	0.6388	-0.0039395								0	0	0	0.97045	1	57	57		0	0	1				5071	6501	2746	2773	4983	4983					-0.2366016368982855
DDDDDWNPC	9	Unmodified	_DDDDDWNPC_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MSMS	HCT116MG_D190212_S1	1	547.6722412109375	2	547.672011	1093.32947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.75	1	61.75	61.25	62.25	0								0	0	0	0.77025	1	23832	23832		0	0	1				5072	2160	2747	2774	4984	4984					-0.21346297874538323
DDDDGYGE	8	Unmodified	_DDDDGYGE_					0	0	0			REV__RIOK1|p.D64G|1|0.37|ENSG00000124784|chr6:7393218-7393218|A/G|missense_variant	REV__RIOK1|p.D64G|1|0.37|ENSG00000124784|chr6:7393218-7393218|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	443.14080810546875	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4261	1	8.4261	7.9261	8.9261	0								0	0	0	0.8837	1	2548	2548		0.69038	0	1		+		5073	17470	2748	2775	4985	4985					-0.17957700951217248
DDDDGYGE	8	Unmodified	_DDDDGYGE_					0	0	0			REV__RIOK1|p.D64G|1|0.37|ENSG00000124784|chr6:7393218-7393218|A/G|missense_variant	REV__RIOK1|p.D64G|1|0.37|ENSG00000124784|chr6:7393218-7393218|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	443.1408386230469	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7961	1	2.7557	2.2557	3.2557	-0.040353								0	0	0	0.8837	1	897	897		0.69038	0.69038	1		+		5074	17470	2748	2775	4986	4986					-0.17957700951217248
DDDDQDNS	8	Unmodified	_DDDDQDNS_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	462.1466369628906	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6105	1	8.6105	8.1105	9.1105	0								0	0	0	0.8837	1	2597	2597		0.69038	0	1		+		5075	10417	2749	2776	4987	4987					-0.18543503927890015
DDDDQDNS	8	Unmodified	_DDDDQDNS_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	462.14666748046875	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.268	1	10.986	10.486	11.486	-0.28186								0	0	0	0.8837	1	3620	3620		0.69038	0	1		+		5076	10417	2749	2776	4988	4988					-0.18543503927890015
DDDEFDEDY	9	Unmodified	_DDDEFDEDY_					0	0	0			REV__HBS1L|p.G196Dfs*40|1|0.3|ENSG00000112339|chr6:134997611-134997611|T/-|frameshift_variant	REV__HBS1L|p.G196Dfs*40|1|0.3|ENSG00000112339|chr6:134997611-134997611|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	388.1277160644531	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.157	1	4.0679	3.5679	4.5679	-0.089082								0	0	0	0.77019	1	1313	1313		0.23584	0.23584	1		+		5077	11458	2750	2777	4989	4989					-0.21201812270692244
DDDSDDDEESK	11	Unmodified	_DDDSDDDEESK_					0	0	0		ENST00000538548.5_1_12:132198725-132271134:+|nuORF;SFSWAP|p.H761Afs*23|1|0.09|ENSG00000061936|chr12:131778196-131778197|-/A|frameshift_variant;SFSWAP|p.K760Sfs*72|2|0.23|ENSG00000061936|chr12:131778197-131778197|A/-|frameshift_variant;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	MSMS	HCT116MG_D190212_S3	3	423.8132629394531	3	423.812753	1268.41643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.832	1	10.872	10.372	11.372	0.039975								0	0	0	0.96149	1	3299	3299		0.08335	0	1				5078	1118	2751	2778	4990	4990					-0.2070426490979571
DDECSPLCCC	10	Unmodified	_DDECSPLCCC_					0	0	0			REV__ENST00000379095.4_1_15:90818360-90818948:+|nuORF	REV__ENST00000379095.4_1_15:90818360-90818948:+|nuORF	MSMS	HCT116MG_D190212_S2	2	363.1112060546875	3	363.111489	1086.31264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.779	1	11.49	10.99	11.99	-0.28953								0	0	0	0.97116	1	3816	3816		0	0	1		+		5079	15255	2752	2779	4991	4991					-0.22706581347983956
DDECSPLCCC	10	Unmodified	_DDECSPLCCC_					0	0	0			REV__ENST00000379095.4_1_15:90818360-90818948:+|nuORF	REV__ENST00000379095.4_1_15:90818360-90818948:+|nuORF	MSMS	HCT116MG_D190212_S4	4	363.0223388671875	3	363.111489	1086.31264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8937	1	6.6436	6.1436	7.1436	-0.25015								0	0	0	0.97116	1	2112	2112		0	0	1		+		5080	15255	2752	2779	4992	4992					-0.22706581347983956
DDEEDSLELQE	11	Unmodified	_DDEEDSLELQE_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;FBXO38|p.N697Tfs*32|1|0.21|ENSG00000145868|chr5:148427377-148427377|A/-|frameshift_variant;FBXO38|p.N697Kfs*44|1|0.3|ENSG00000145868|chr5:148427376-148427377|-/A|frameshift_variant;FBXO38|p.S849Afs*20|1|0.38|ENSG00000145868|chr5:148427834-148427834|G/-|frameshift_variant	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MSMS	HCT116MG_D190212_S1	1	661.267333984375	2	661.267526	1320.5205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.031	1	31.031	30.531	31.531	0								0	0	0	0.95113	1	11403	11403		5.7319	0	1				5081	3927	2753	2780	4993	4993					-0.1269393808224777
DDEWSEYR	8	Unmodified	_DDEWSEYR_					0	0	0			REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	MSMS	HCT116MG_D190212_S1	1	550.2175903320312	2	550.219985	1098.42542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5913	1	1.5913	1.0913	2.0913	0								0	0	0	0.8837	1	473	473		0.69038	0.088878	1		+		5082	14134	2754	2781	4994	4994					-0.11985781972134646
DDEYSDDDDM	10	Unmodified	_DDEYSDDDDM_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1;CAND1|p.N680Kfs*3|1|0.24|ENSG00000111530|chr12:67305701-67305702|-/A|frameshift_variant	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MSMS	HCT116MG_D190212_S1	1	610.1842651367188	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.778	1	48.778	48.278	49.278	0								0	0	0	0.96937	1	18570	18570		0.40072	0.093686	1				5083	2294	2755	2782	4995	4995					-0.24978377356342207
DDEYSDDDDM	10	Unmodified	_DDEYSDDDDM_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1;CAND1|p.N680Kfs*3|1|0.24|ENSG00000111530|chr12:67305701-67305702|-/A|frameshift_variant	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MSMS	HCT116MG_D190212_S1	1	610.1846313476562	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.216	1	53.216	52.716	53.716	0								0	0	0	0.96453	1	20375	20375		1.4819	0.8804	1				5084	2294	2755	2782	4996	4996					-0.24978377356342207
DDEYSDDDDM	10	Unmodified	_DDEYSDDDDM_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1;CAND1|p.N680Kfs*3|1|0.24|ENSG00000111530|chr12:67305701-67305702|-/A|frameshift_variant	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MSMS	HCT116MG_D190212_S2	2	610.1843872070312	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0426	1	1.0363	0.53632	1.5363	-0.0062599								0	0	0	0.96911	1	334	334		0.45834	0	1				5085	2294	2755	2782	4997	4997					-0.24978377356342207
DDEYSDDDDM	10	Unmodified	_DDEYSDDDDM_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1;CAND1|p.N680Kfs*3|1|0.24|ENSG00000111530|chr12:67305701-67305702|-/A|frameshift_variant	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MSMS	HCT116MG_D190212_S3	3	610.1843872070312	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.472	1	18.548	18.048	19.048	0.076334								0	0	0	0.96937	1	6275	6275		0.40072	0.050084	1				5086	2294	2755	2782	4998	4998					-0.24978377356342207
DDFGECCC	8	Unmodified	_DDFGECCC_					0	0	0		ENSG00000105427|ENST00000222032|CNFN	ENSG00000105427|ENST00000222032|CNFN	ENSG00000105427|ENST00000222032|CNFN	MSMS	HCT116MG_D190212_S1	1	446.16546630859375	2	446.119514	890.224475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.425	1	52.425	51.925	52.925	0								0	0	0	0.8837	1	20051	20051		0	0	1				5087	2008	2756	2783	4999	4999					-0.22502833876319528
DDFHIYVY	8	Unmodified	_DDFHIYVY_					0	0	0		ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A;ENSG00000106723|ENST00000375859|SPIN1;ENSG00000204271|ENST00000374919|SPIN3	ENSG00000186787|ENST00000434397|SPIN2B	ENSG00000186787|ENST00000434397|SPIN2B	MULTI-MSMS	HCT116MG_D190212_S2	2	536.24267578125	2	536.242732	1070.47091	0.45971	0.00024652	-0.29213	-0.00015665	0.16758	8.9864E-05	536.242475676317	51.48	0.36036	51.296	51.115	51.475	-0.18369					16	6	4	0	0	0	0.23352	1	19757	19757		67.035	34.918	1	73890000			5088	2093	2757	2784	5000	5000					-0.06150511719079077
DDFHIYVY	8	Unmodified	_DDFHIYVY_					0	0	0		ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A;ENSG00000106723|ENST00000375859|SPIN1;ENSG00000204271|ENST00000374919|SPIN3	ENSG00000186787|ENST00000434397|SPIN2B	ENSG00000186787|ENST00000434397|SPIN2B	MULTI-MSMS	HCT116MG_D190212_S2	2	1071.4755859375	1	1071.47819	1070.47091	0.48983	0.00052484	-0.73309	-0.00078549	-0.24326	-0.00026064	1071.4770724069792	51.428	0.20677	51.249	51.171	51.378	-0.17868					6	3	2	0	0	0	0.25164	1	19768	19768		63.563	38.889	1	13607000			5089	2093	2757	2784	5001	5001					-0.06150511719079077
DDFHIYVY	8	Unmodified	_DDFHIYVY_					0	0	0		ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A;ENSG00000106723|ENST00000375859|SPIN1;ENSG00000204271|ENST00000374919|SPIN3	ENSG00000186787|ENST00000434397|SPIN2B	ENSG00000186787|ENST00000434397|SPIN2B	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2428588867188	2	536.242732	1070.47091	0.449	0.00024077	-0.068016	-3.6473E-05	0.38099	0.0002043	536.242645810958	51.615	0.36671	51.304	51.12	51.486	-0.31166					10	6	2	0	0	0	0.43493	1	19497	19497		46.921	22.247	1	18199000			5090	2093	2757	2784	5002	5002					-0.06150511719079077
DDFHIYVY	8	Unmodified	_DDFHIYVY_					0	0	0		ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A;ENSG00000106723|ENST00000375859|SPIN1;ENSG00000204271|ENST00000374919|SPIN3	ENSG00000186787|ENST00000434397|SPIN2B	ENSG00000186787|ENST00000434397|SPIN2B	MULTI-MSMS	HCT116MG_D190212_S4	4	536.2425537109375	2	536.242732	1070.47091	0.41935	0.00022488	0.28612	0.00015343	0.70548	0.00037831	536.2426675380941	51.664	0.25997	51.314	51.15	51.41	-0.35028					11	4	3	0	0	0	0.43493	1	19247	19247		46.921	26.05	1	8351100			5091	2093	2757	2784	5003	5003					-0.06150511719079077
DDFHIYVY	8	Unmodified	_DDFHIYVY_					0	0	0		ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A;ENSG00000106723|ENST00000375859|SPIN1;ENSG00000204271|ENST00000374919|SPIN3	ENSG00000186787|ENST00000434397|SPIN2B	ENSG00000186787|ENST00000434397|SPIN2B	MULTI-MATCH	HCT116MG_D190212_S1	1		2	536.242732	1070.47091	0.26772	0.00014357	0.035847	1.9223E-05	0.30357	0.00016279	536.242632599598	51.22	0.1547	51.22	51.091	51.246	0	-0.062876	0.00013886	NaN	67.035	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8716800			5092	2093	2757	2784							-0.06150511719079077
DDFKAEDF	8	Unmodified	_DDFKAEDF_					0	0	0		ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000581920.1_1_18:667730-672994:+|nuORF	ENST00000581920.1_1_18:667730-672994:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	493.70880126953125	2	493.708722	985.402892	0.22695	0.00011205	0.39174	0.00019341	0.61869	0.00030545	493.7088362368206	39.342	0.2676	39.04	38.872	39.14	-0.30137					6	4	2	0	0	0	0.24264	1	14620	14620		65.235	25.278	1	4686400			5093	5437	2758	2785	5004	5004					-0.09039381369757393
DDFPHVGY	8	Unmodified	_DDFPHVGY_					0	0	0		ENSG00000261236|ENST00000569669|BOP1;nc|ENSG00000261236|Q14137-2|BOP1;ENST00000529231.1_8:145488904-145515052:-|nuORF	ENSG00000261236|ENST00000569669|BOP1	ENSG00000261236|ENST00000569669|BOP1	MULTI-MSMS	HCT116MG_D190212_S1	1	475.2072448730469	2	475.20615	948.397747	0.31849	0.00015135	1.1627	0.00055253	1.4812	0.00070388	475.20686113373284	41.229	0.20819	41.229	41.133	41.341	0					5	3	2	0	0	0	0.13911	1	15556	15556		86.121	65.25	1	14412000			5094	6629	2759	2786	5005	5005					-0.07851640441708696
DDFPHVGY	8	Unmodified	_DDFPHVGY_					0	0	0		ENSG00000261236|ENST00000569669|BOP1;nc|ENSG00000261236|Q14137-2|BOP1;ENST00000529231.1_8:145488904-145515052:-|nuORF	ENSG00000261236|ENST00000569669|BOP1	ENSG00000261236|ENST00000569669|BOP1	MULTI-MSMS	HCT116MG_D190212_S2	2	475.2059326171875	2	475.20615	948.397747	0.15198	7.2222E-05	-0.61086	-0.00029029	-0.45888	-0.00021806	475.20587034755374	41.247	0.25598	41.179	41.037	41.293	-0.068199					7	4	2	0	0	0	0.03907	1	15600	15600		136.08	95.632	1	29032000			5095	6629	2759	2786	5006	5006					-0.07851640441708696
DDFRFKDRF	9	Unmodified	_DDFRFKDRF_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	416.2491760253906	3	415.871883	1244.59382	-0.26947	-0.00011207	-0.28645	-0.00011913	-0.55592	-0.00023119	415.8718092176752	37.898	0.15474	37.805	37.702	37.857	-0.09301					4	2	2	0	0	0	0.24849	1	14222	14222		13.615	3.4643	1	23778000			5096	1806	2760	2787	5007	5007					-0.018692552678203356
DDFYMRRFR	9	Unmodified	_DDFYMRRFR_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;SIPA1L1|p.R58Kfs*2|1|0.38|ENSG00000197555|chr14:71588038-71588039|CC/-|frameshift_variant;SIPA1L1|p.R58Efs*8|1|0.35|ENSG00000197555|chr14:71588038-71588038|C/-|frameshift_variant	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MSMS	HCT116MG_D190212_S2	2	435.8757629394531	3	435.876751	1304.60842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9052	1	4.7865	4.2865	5.2865	-0.11871								0	0	0	0.77018	1	1553	1553		0.26902	0.1097	1				5097	6154	2761	2788	5008	5008					-0.03169506391327559
DDGDDDDDDDN	11	Unmodified	_DDGDDDDDDDN_					0	0	0			REV__ENST00000483012.1_1_7:148516133-148534012:-|nuORF	REV__ENST00000483012.1_1_7:148516133-148534012:-|nuORF	MSMS	HCT116MG_D190212_S2	2	613.1661376953125	2	613.165998	1224.31744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5729	1	4.4635	3.9635	4.9635	-0.10939								0	0	0	0.96208	1	1440	1440		0	0	1		+		5098	11298	2762	2789	5009	5009					-0.28574287874675974
DDGDDGGTDG	10	Unmodified	_DDGDDGGTDG_					0	0	0		nc|ENSG00000152583|Q14515-2|SPARCL1;ENSG00000152583|ENST00000282470|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	MSMS	HCT116MG_D190212_S3	3	462.146728515625	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.661	1	58.393	57.893	58.893	-0.2683								0	0	0	0.97116	1	22320	22320		0	0	1				5099	4158	2763	2790	5010	5010					-0.18543503927867278
DDGNDDNS	8	Unmodified	_DDGNDDNS_					0	0	0		nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2	nc|ENSG00000145147|O94813-3|SLIT2	nc|ENSG00000145147|O94813-3|SLIT2	MSMS	HCT116MG_D190212_S1	1	426.1372985839844	2	426.136118	850.257684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9726	1	1.9726	1.4726	2.4726	0								0	0	0	0.8837	1	588	588		0.79363	0	1				5100	3898	2764	2791	5011	5011					-0.17343469236743658
DDIHIYVY	8	Unmodified	_DDIHIYVY_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2508544921875	2	519.250557	1036.48656	0.48443	0.00025154	-0.068386	-3.5509E-05	0.41604	0.00021603	519.250410181146	47.174	0.51628	47.052	46.871	47.388	-0.12175					20	9	3	0	0	0	0.23352	1	17989	17989		67.035	17.366	1	176800000			5101	5906	2765	2792	5012	5012					-0.03022225202039408
DDIHIYVY	8	Unmodified	_DDIHIYVY_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	HCT116MG_D190212_S2	2	1037.4940185546875	1	1037.49384	1036.48656	0.84299	0.0008746	-0.059245	-6.1466E-05	0.78375	0.00081313	1037.4930713321796	47.18	0.25924	47.058	46.922	47.182	-0.12175					10	4	3	0	0	0	0.19622	1	18000	18000		74.396	17.855	1	29456000			5102	5906	2765	2792	5013	5013					-0.03022225202039408
DDIHIYVY	8	Unmodified	_DDIHIYVY_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	HCT116MG_D190212_S3	3	519.2504272460938	2	519.250557	1036.48656	0.1542	8.0067E-05	0.21839	0.0001134	0.37259	0.00019347	519.2505052746808	47.413	0.3057	47.098	46.905	47.211	-0.31525					11	6	2	0	0	0	0.43493	1	17803	17803		46.921	14.615	1	24346000			5103	5906	2765	2792	5014	5014					-0.03022225202039408
DDIHIYVY	8	Unmodified	_DDIHIYVY_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	HCT116MG_D190212_S4	4	519.2509155273438	2	519.250557	1036.48656	0.42487	0.00022062	0.020054	1.0413E-05	0.44493	0.00023103	519.2504858926619	47.436	0.2906	47.065	46.898	47.188	-0.37038					21	14	2	0	0	0	0.53394	1	17535	17535		38.151	5.8457	1	24324000			5104	5906	2765	2792	5015	5015					-0.03022225202039408
DDIKDLKV	8	Unmodified	_DDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2664489746094	2	473.266207	944.517862	0.61788	0.00029242	-0.31561	-0.00014937	0.30227	0.00014305	473.26608355786567	43.711	0.20544	43.633	43.505	43.71	-0.078373					5	3	2	0	0	0	0.53366	1	16612	16612		38.176	2.0485	1	16058000			5105	4249	2766	2793	5016	5016					0.04338347832049294
DDIRAITF	8	Unmodified	_DDIRAITF_					0	0	0		ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	HCT116MG_D190212_S2	2	475.7510070800781	2	475.750724	949.486896	0.43428	0.00020661	-0.24016	-0.00011426	0.19412	9.2351E-05	475.75055385212517	47.435	0.41284	47.313	47.13	47.543	-0.12175					15	7	3	0	0	0	0.051049	1	18099	18099		122.18	67.406	1	39830000			5106	2760	2767	2794	5017	5017					0.010131945177931811
DDIRAITF	8	Unmodified	_DDIRAITF_					0	0	0		ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	HCT116MG_D190212_S3	3	475.7511901855469	2	475.750724	949.486896	-0.010355	-4.9262E-06	0.68805	0.00032734	0.6777	0.00032242	475.75118289319835	47.7	0.25925	47.385	47.256	47.515	-0.31525					6	4	2	0	0	0	0.29007	1	17931	17931		60.074	25.971	1	5836900			5107	2760	2767	2794	5018	5018					0.010131945177931811
DDKPIRHWA	9	Unmodified	_DDKPIRHWA_					0	0	0			REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	REV__OLAH|p.K164Sfs*10|2|0.24|ENSG00000152463|chr10:15065666-15065666|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	569.2939453125	2	569.293622	1136.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.413	1	29.187	28.687	29.687	-0.22609								0	0	0	0.76655	1	10684	10684		13.042	1.5478	1		+		5108	12629	2768	2795	5019	5019					0.00986779423351436
DDLHVERY	8	Unmodified	_DDLHVERY_					0	0	0		ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	MULTI-SECPEP	HCT116MG_D190212_S2	2	523.2695922851562	2	523.748713	1045.48287	0.40291	0.00021103	0.19591	0.00010261	0.59883	0.00031364	523.7488233807085	28.23	0.20739	27.9	27.77	27.977	-0.32987					6	3	2	0	0	0	0.2951	1	10313	10313		13.042	0	1	20681000			5109	4568	2769	2796	5020	5020					-0.03804894975883144
DDLLGPNKTL	10	Unmodified	_DDLLGPNKTL_					0	0	0			REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant	REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	543.29443359375	2	543.295496	1084.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.194	1	58.917	58.417	59.417	-0.27731								0	0	0	0.95648	1	22270	22270		3.2813	1.7994	1		+		5110	12003	2770	2797	5021	5021					0.03753404406529626
DDLMRATPCSP	11	Unmodified	_DDLMRATPCSP_					0	0	0			REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	MSMS	HCT116MG_D190212_S1	1	603.2681274414062	2	603.268098	1204.52164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.662	1	26.662	26.162	27.162	0								0	0	0	0.93717	1	9643	9643		13.042	0	1		+		5111	12900	2771	2798	5022	5022					-0.07243673728066824
DDLNNKKDSCM	11	Unmodified	_DDLNNKKDSCM_					0	0	0		SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant	SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1282.53955078125	1	1282.54021	1281.53294	0.75459	0.0009678	-0.69503	-0.0008914	0.059566	7.6396E-05	1282.5388177711363	55.172	0.25396	55.172	55.044	55.298	0					10	4	3	0	0	0	0.74191	1	21206	21206		1.1933	0.59184	1	66415000			5112	3857	2772	2799	5023	5023					-0.09656896424576189
DDLNNKKDSCM	11	Unmodified	_DDLNNKKDSCM_					0	0	0		SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant	SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1282.54021	1281.53294	0.75459	0.0009678	-0.69503	-0.0008914	0.059566	7.6396E-05	1282.5388177711363	55.172	0.25396	55.172	55.044	55.298	0	-0.0199	-3.4832E-06	NaN	1.1933	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66415000			5113	3857	2772	2799							-0.09656896424576189
DDLNNKKDSCM	11	Unmodified	_DDLNNKKDSCM_					0	0	0		SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant	SCN1A|p.N1126Kfs*8|1|0.17|ENSG00000144285|chr2:166036099-166036100|-/T|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1282.54021	1281.53294	0.60313	0.00077353	-0.67551	-0.00086637	-0.072383	-9.2834E-05	1282.5383511585499	55.397	0.20455	55.212	55.123	55.327	-0.18565	0.0199	2.155E-05	NaN	1.1933	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11930000			5114	3857	2772	2799							-0.09656896424576189
DDMKHLWDY	9	Unmodified	_DDMKHLWDY_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	HCT116MG_D190212_S1	1	611.7639770507812	2	611.763506	1221.51246	0.55817	0.00034147	-0.13971	-8.5467E-05	0.41847	0.000256	611.7634666780489	45.682	0.36692	45.682	45.451	45.818	0					12	6	3	0	0	0	0.0068642	1	17323	17323		121.35	86.944	1	16742000			5115	3526	2773	2800	5024	5024					-0.08943699022074725
DDMKHLWDY	9	Unmodified	_DDMKHLWDY_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MSMS	HCT116MG_D190212_S2	2	611.7633056640625	2	611.763506	1221.51246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.639	1	45.538	45.038	46.038	-0.1014								0	0	0	4.3226E-05	1	17361	17361		143.91	101.81	1				5116	3526	2773	2800	5025	5025					-0.08943699022074725
DDMKHLWDY	9	Unmodified	_DDMKHLWDY_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	611.763506	1221.51246	0.59188	0.00036209	0.16708	0.00010221	0.75895	0.0004643	611.7636883308637	45.882	0.15561	45.571	45.461	45.616	-0.31094	-0.055237	0.00017013	NaN	121.35	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4392900			5117	3526	2773	2800							-0.08943699022074725
DDMSAVEF	8	Unmodified	_DDMSAVEF_					0	0	0		ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;NOMO1|p.E577D|1|0.48|ENSG00000103512|chr16:14866616-14866616|G/T|missense_variant	ENSG00000103512|ENST00000287667|NOMO1	ENSG00000103512|ENST00000287667|NOMO1	MULTI-MSMS	HCT116MG_D190212_S3	3	913.361083984375	1	913.360775	912.353498	0.55025	0.00050258	-0.0043812	-4.0016E-06	0.54587	0.00049858	913.360759273172	47.96	0.41692	47.645	47.462	47.879	-0.31596					11	7	2	0	0	0	0.25164	1	18031	18031		63.563	23.114	1	9368900			5118	1899	2774	2801	5026	5026					-0.10618412650205755
DDMSAVEF	8	Unmodified	_DDMSAVEF_					0	0	0		ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant;NOMO1|p.E577D|1|0.48|ENSG00000103512|chr16:14866616-14866616|G/T|missense_variant	ENSG00000103512|ENST00000287667|NOMO1	ENSG00000103512|ENST00000287667|NOMO1	MULTI-MSMS	HCT116MG_D190212_S4	4	913.3618774414062	1	913.360775	912.353498	0.74522	0.00068065	-0.2048	-0.00018706	0.54041	0.00049359	913.3605509325172	47.966	0.30846	47.597	47.418	47.726	-0.36907					7	5	2	0	0	0	0.25164	1	17781	17781		63.563	29.376	1	3962900			5119	1899	2774	2801	5027	5027					-0.10618412650205755
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	615.1807861328125	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8502	1	5.8502	5.3502	6.3502	0								0	0	0	0.96208	1	1762	1762		0	0	1		+		5120	12598	2775	2802	5028	5028					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	615.1788940429688	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.5429	1	6.5429	6.0429	7.0429	0								0	0	0	0.96208	1	1971	1971		0	0	1		+		5121	12598	2775	2802	5029	5029					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	615.178955078125	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.071	1	9.071	8.571	9.571	0								0	0	0	0.96208	1	2745	2745		0	0	1		+		5122	12598	2775	2802	5030	5030					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	615.1793823242188	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.228	1	13.228	12.728	13.728	0								0	0	0	0.96208	1	4287	4287		0	0	1		+		5123	12598	2775	2802	5031	5031					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	615.177978515625	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.49137	1	0.48743	-0.012569	0.98743	-0.0039395								0	0	0	0.96208	1	159	159		0	0	1		+		5124	12598	2775	2802	5032	5032					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	615.1796875	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5266	1	3.4645	2.9645	3.9645	-0.062129								0	0	0	0.96208	1	1118	1118		0	0	1		+		5125	12598	2775	2802	5033	5033					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	615.1802368164062	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.955	1	12.658	12.158	13.158	-0.29721								0	0	0	0.96208	1	4239	4239		0	0	1		+		5126	12598	2775	2802	5034	5034					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	615.1798095703125	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.041	1	13.729	13.229	14.229	-0.31202								0	0	0	0.96208	1	4585	4585		0	0	1		+		5127	12598	2775	2802	5035	5035					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	615.1785278320312	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.193	1	63.069	62.569	63.569	-0.1236								0	0	0	0.96208	1	24501	24501		0	0	1		+		5128	12598	2775	2802	5036	5036					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	615.1793823242188	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.368	1	64.252	63.752	64.752	-0.11585								0	0	0	0.96208	1	24914	24914		0	0	1		+		5129	12598	2775	2802	5037	5037					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	615.1783447265625	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.5475	1	6.5614	6.0614	7.0614	0.013901								0	0	0	0.96208	1	1976	1976		0	0	1		+		5130	12598	2775	2802	5038	5038					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	615.1788330078125	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.626	1	63.412	62.912	63.912	-0.21454								0	0	0	0.96208	1	24267	24267		0	0	1		+		5131	12598	2775	2802	5039	5039					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	615.177001953125	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.83545	1	0.57089	0.070891	1.0709	-0.26456								0	0	0	0.96208	1	267	267		0	0	1		+		5132	12598	2775	2802	5040	5040					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	615.1793823242188	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.814	1	3.5495	3.0495	4.0495	-0.26456								0	0	0	0.96208	1	1169	1169		0	0	1		+		5133	12598	2775	2802	5041	5041					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	615.1790161132812	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0176	1	7.7862	7.2862	8.2862	-0.23148								0	0	0	0.96208	1	2451	2451		0	0	1		+		5134	12598	2775	2802	5042	5042					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	615.178466796875	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.6	1	10.41	9.9098	10.91	-0.18973								0	0	0	0.96208	1	3249	3249		0	0	1		+		5135	12598	2775	2802	5043	5043					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	614.7933959960938	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.717	1	62.468	61.968	62.968	-0.24919								0	0	0	0.96208	1	23682	23682		0	0	1		+		5136	12598	2775	2802	5044	5044					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	615.1798095703125	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.818	1	62.574	62.074	63.074	-0.24392								0	0	0	0.96208	1	23722	23722		0	0	1		+		5137	12598	2775	2802	5045	5045					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	615.1788330078125	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.366	1	63.127	62.627	63.627	-0.2389								0	0	0	0.96208	1	23897	23897		0	0	1		+		5138	12598	2775	2802	5046	5046					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	615.1760864257812	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.883	1	63.644	63.144	64.144	-0.2389								0	0	0	0.96208	1	24072	24072		0	0	1		+		5139	12598	2775	2802	5047	5047					-0.26195131429221874
DDNCNMDNDCA	11	Unmodified	_DDNCNMDNDCA_					0	0	0			REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	REV__NPAS3|p.L707Cfs*103|1|0.35|ENSG00000151322|chr14:33800420-33800420|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	615.1777954101562	2	615.17882	1228.34309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.918	1	63.68	63.18	64.18	-0.2389								0	0	0	0.96208	1	24084	24084		0	0	1		+		5140	12598	2775	2802	5048	5048					-0.26195131429221874
DDNELMTSGP	10	Unmodified	_DDNELMTSGP_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MSMS	HCT116MG_D190212_S4	4	360.15020751953125	3	360.150095	1077.42845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.179	1	12.005	11.505	12.505	-0.17441								0	0	0	0.97116	1	3769	3769		0	0	1				5141	2789	2776	2803	5049	5049					-0.10716274909600543
DDNPNLPR	8	Unmodified	_DDNPNLPR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	470.7279968261719	2	470.727781	939.441008	0.21001	9.8856E-05	0.050733	2.3881E-05	0.26074	0.00012274	470.7276875704328	23.584	0.78337	23.584	23.158	23.941	0					20	14	2	0	0	0	0.076688	1	8382	8382		100.37	45.598	1	8134900		+	5142	554	2777	2804	5050	5050					-0.03113450664420725
DDNPNLPR	8	Unmodified	_DDNPNLPR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	470.7277526855469	2	470.727781	939.441008	0.18955	8.9229E-05	0.2356	0.0001109	0.42515	0.00020013	470.72789853556594	23.685	0.62538	23.639	23.285	23.91	-0.046234					20	11	2	0	0	0	0.2477	1	8313	8313		64.236	40.216	1	7880300		+	5143	554	2777	2804	5051	5051					-0.03113450664420725
DDNPNLPR	8	Unmodified	_DDNPNLPR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	470.7276916503906	2	470.727781	939.441008	0.20147	9.4836E-05	0.080028	3.7671E-05	0.28149	0.00013251	470.7277638372559	23.835	0.62397	23.577	23.261	23.885	-0.25816					18	11	2	0	0	0	0.12693	1	8348	8348		88.904	54.801	1	6386900		+	5144	554	2777	2804	5052	5052					-0.03113450664420725
DDNPNLPR	8	Unmodified	_DDNPNLPR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	470.727781	939.441008	0.42103	0.00019819	0.10051	4.7312E-05	0.52154	0.0002455	470.7276281637961	24.004	0.36377	23.621	23.403	23.767	-0.38324	0.015774	-2.1579E-05	NaN	100.37	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6768900		+	5145	554	2777	2804							-0.03113450664420725
DDNVKKILQY	10	Unmodified	_DDNVKKILQY_					0	0	0		tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1	tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1	tr|U7T4W0|U7T4W0_FUSNUDNArepairproteinRecOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recOPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	412.55963134765625	3	412.559194	1234.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.214	1	13.283	12.783	13.783	0.069158								0	0	0	0.96453	1	4177	4177		0.62683	0	1				5146	18620	2778	2805	5053	5053					0.0478105136069189
DDPDIVVKGW	10	Unmodified	_DDPDIVVKGW_					0	0	0		ENST00000592974.5_1_17:40825317-40826415:-|nuORF;PLEKHH3|p.V192Wfs*6|1|0.27|ENSG00000068137|chr17:42673473-42673473|C/-|frameshift_variant;PLEKHH3|p.A280Rfs*7|1|0.2|ENSG00000068137|chr17:42672324-42672324|C/-|frameshift_variant;nc|ENSG00000068137|Q7Z736-4|PLEKHH3;ENST00000456950.6_1_17:40821512-40828020:-|nuORF;nc|ENSG00000068137|Q7Z736-3|PLEKHH3;nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF;ENSG00000068137|ENST00000591022|PLEKHH3	ENST00000592974.5_1_17:40825317-40826415:-|nuORF	ENST00000592974.5_1_17:40825317-40826415:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	572.3245849609375	2	572.287671	1142.56079	0.55827	0.00031949	0.81208	0.00046474	1.3704	0.00078423	572.2881473095617	40.662	0.30875	40.593	40.416	40.725	-0.069626					7	5	2	0	0	0	0.71349	1	15276	15276		19.257	2.3147	1	9653600			5147	1199	2779	2806	5054	5054					-0.004788821105194074
DDQIAIVF	8	Unmodified	_DDQIAIVF_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA;nc|ENSG00000119383|Q15257-3|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MULTI-MSMS	HCT116MG_D190212_S2	2	920.4724731445312	1	920.472374	919.465098	0.89415	0.00082304	0.48579	0.00044716	1.3799	0.0012702	920.4723014817729	56.787	0.42386	56.608	56.368	56.792	-0.17904					13	7	3	0	0	0	0.076688	1	21932	21932		100.37	15.015	1	67298000			5148	2636	2780	2807	5055	5055					0.002143897692462815
DDQIAIVF	8	Unmodified	_DDQIAIVF_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA;nc|ENSG00000119383|Q15257-3|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MULTI-MSMS	HCT116MG_D190212_S3	3	920.4720458984375	1	920.472374	919.465098	0.96204	0.00088553	0.38806	0.0003572	1.3501	0.0012427	920.4720323684152	56.93	0.31258	56.651	56.521	56.833	-0.27913					9	5	2	0	0	0	0.1772	1	21629	21629		78.149	13.913	1	8413000			5149	2636	2780	2807	5056	5056					0.002143897692462815
DDQIAIVF	8	Unmodified	_DDQIAIVF_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA;nc|ENSG00000119383|Q15257-3|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MULTI-MSMS	HCT116MG_D190212_S4	4	920.4730834960938	1	920.472374	919.465098	0.92599	0.00085235	0.16958	0.0001561	1.0956	0.0010084	920.4724820071789	56.949	0.36446	56.649	56.519	56.883	-0.3004					11	6	3	0	0	0	0.1772	1	21364	21364		78.149	13.913	1	10652000			5150	2636	2780	2807	5057	5057					0.002143897692462815
DDQIAIVF	8	Unmodified	_DDQIAIVF_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA;nc|ENSG00000119383|Q15257-3|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MULTI-MATCH	HCT116MG_D190212_S1	1		1	920.472374	919.465098	0.9086	0.00083634	-0.30749	-0.00028303	0.60111	0.00055331	920.4718481329843	56.608	0.15463	56.608	56.531	56.686	0	-0.020784	-0.00032836	NaN	100.37	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11095000			5151	2636	2780	2807							0.002143897692462815
DDRIVHEL	8	Unmodified	_DDRIVHEL_					0	0	0		ENSG00000160124|ENST00000291458|MIX23;ENST00000498466.1_1_3:122087016-122102071:-|nuORF	ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	MULTI-MSMS	HCT116MG_D190212_S1	1	498.7592468261719	2	498.759081	995.503609	0.39872	0.00019886	-1.0232	-0.00051031	-0.62444	-0.00031144	498.7594283476116	34.224	0.31291	34.224	34.024	34.337	0					9	5	3	0	0	0	0.52866	1	12706	12706		38.615	9.5332	1	31210000			5152	4432	2781	2808	5058	5058					0.005676954037653559
DDRVVVEY	8	Unmodified	_DDRVVVEY_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3;nc|ENSG00000074356|Q53F19-2|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	HCT116MG_D190212_S2	2	497.7454833984375	2	497.745639	993.476725	0.43463	0.00021634	1.3108	0.00065246	1.7455	0.00086879	497.745618809249	35.614	0.30822	35.471	35.335	35.643	-0.14245					12	5	3	0	0	0	0.22303	1	13321	13321		69.105	12.928	1	19442000			5153	1296	2782	2809	5059	5059					-0.02027413207429163
DDRVVVEY	8	Unmodified	_DDRVVVEY_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3;nc|ENSG00000074356|Q53F19-2|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2471618652344	2	497.745639	993.476725	0.43799	0.00021801	0.40911	0.00020364	0.84711	0.00042164	497.7456999826958	35.848	0.3415	35.548	35.388	35.729	-0.30042					12	7	2	0	0	0	0.14122	2	13222	13222;13233		85.642	12.928	1	18527000			5154	1296	2782	2809	5060;5061	5060					-0.02027413207429163
DDRVVVEY	8	Unmodified	_DDRVVVEY_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3;nc|ENSG00000074356|Q53F19-2|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	HCT116MG_D190212_S4	4	497.745849609375	2	497.745639	993.476725	0.73099	0.00036385	-1.0987	-0.00054685	-0.36767	-0.000183	497.7452727678229	35.932	0.18935	35.546	35.433	35.622	-0.38606					7	4	2	0	0	0	0.17427	1	13136	13136		78.728	13.493	1	8485000			5155	1296	2782	2809	5062	5062					-0.02027413207429163
DDSKLKIIYI	10	Unmodified	_DDSKLKIIYI_					0	0	0			REV__tr|U7SSP0|U7SSP0_FUSNUNudixhydrolasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01331PE=4SV=1	REV__tr|U7SSP0|U7SSP0_FUSNUNudixhydrolasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01331PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	604.3506469726562	2	604.350271	1206.68599	0.66875	0.00040416	0.61278	0.00037033	1.2815	0.00077449	604.3507057435729	54.125	0.15448	53.935	53.842	53.996	-0.1894					4	2	2	0	0	0	0.24395	1	20851	20851		55.503	4.0875	1	15618000	+		5156	17774	2783	2810	5063	5063					0.09091410025871483
DDSLVSLF	8	Unmodified	_DDSLVSLF_					0	0	0		PRDX5|p.I172L|1|0.15|ENSG00000126432|chr11:64321043-64321043|A/C|missense_variant	PRDX5|p.I172L|1|0.15|ENSG00000126432|chr11:64321043-64321043|A/C|missense_variant	PRDX5|p.I172L|1|0.15|ENSG00000126432|chr11:64321043-64321043|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	895.4422607421875	1	895.44074	894.433463	1.2439	0.0011138	0.51369	0.00045998	1.7576	0.0015738	895.4406283680489	57.972	0.31397	57.698	57.516	57.83	-0.27434					8	5	3	0	0	0	0.32897	1	22046	22046		56.541	0	1	5328000			5157	9779	2784	2811	5064	5064					-0.017976029846977326
DDSLVSLF	8	Unmodified	_DDSLVSLF_					0	0	0		PRDX5|p.I172L|1|0.15|ENSG00000126432|chr11:64321043-64321043|A/C|missense_variant	PRDX5|p.I172L|1|0.15|ENSG00000126432|chr11:64321043-64321043|A/C|missense_variant	PRDX5|p.I172L|1|0.15|ENSG00000126432|chr11:64321043-64321043|A/C|missense_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	895.44074	894.433463	1.1198	0.0010027	-0.020081	-1.7981E-05	1.0997	0.00098476	895.4406759966241	57.879	0.15696	57.704	57.574	57.73	-0.17494	0.0030433	1.3455E-06	NaN	56.541	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10644000			5158	9779	2784	2811							-0.017976029846977326
DDTRKEKNE	9	Unmodified	_DDTRKEKNE_					0	0	0			REV__nc|ENSG00000113558|P63208-2|SKP1	REV__nc|ENSG00000113558|P63208-2|SKP1	MSMS	HCT116MG_D190212_S2	2	567.7749633789062	2	567.772916	1133.53128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.543	1	27.201	26.701	27.701	-0.34201								0	0	0	0.38321	1	10009	10009		34.402	2.3642	1		+		5159	11487	2785	2812	5065	5065					-0.030144461266672806
DDVNAVAF	8	Unmodified	_DDVNAVAF_					0	0	0		nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	nc|ENSG00000100897|Q8TEB1-3|DCAF11	nc|ENSG00000100897|Q8TEB1-3|DCAF11	MULTI-MSMS	HCT116MG_D190212_S3	3	850.3946533203125	1	850.394124	849.386848	0.81953	0.00069692	0.10257	8.7228E-05	0.9221	0.00078415	850.3942291713306	43.937	0.31294	43.631	43.448	43.761	-0.30616					7	5	2	0	0	0	0.21275	1	16441	16441		71.134	22.788	1	3058200			5160	1736	2786	2813	5066	5066					-0.04387042815994846
DDVSAVEF	8	Unmodified	_DDVSAVEF_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	HCT116MG_D190212_S1	1	881.3889770507812	1	881.388704	880.381428	0.69977	0.00061677	-0.39387	-0.00034715	0.3059	0.00026962	881.388390637687	45.113	0.15749	45.113	45.034	45.192	0					4	2	2	0	0	0	0.25164	1	17111	17111		63.563	25.412	1	12413000			5161	1882	2787	2814	5067	5067					-0.06354766398465017
DDVSAVEF	8	Unmodified	_DDVSAVEF_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	HCT116MG_D190212_S2	2	881.3908081054688	1	881.388704	880.381428	0.87049	0.00076724	0.18981	0.0001673	1.0603	0.00093454	881.3888476132503	45.219	0.46727	45.127	44.943	45.411	-0.092472					14	8	2	0	0	0	0.21487	1	17203	17203		70.716	23.795	1	40339000			5162	1882	2787	2814	5068	5068					-0.06354766398465017
DDVSAVEF	8	Unmodified	_DDVSAVEF_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	HCT116MG_D190212_S3	3	881.39013671875	1	881.388704	880.381428	0.82547	0.00072756	0.078609	6.9285E-05	0.90408	0.00079684	881.3886255396992	45.47	0.67717	45.159	44.887	45.564	-0.31094					30	12	4	0	0	0	0.21487	1	16995	16995		70.716	21.047	1	53845000			5163	1882	2787	2814	5069	5069					-0.06354766398465017
DDVSAVEF	8	Unmodified	_DDVSAVEF_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	HCT116MG_D190212_S4	4	881.3895263671875	1	881.388704	880.381428	0.86818	0.0007652	-0.15608	-0.00013757	0.7121	0.00062764	881.3883603458786	45.49	0.46193	45.117	44.936	45.398	-0.37266					19	8	3	0	0	0	0.21487	1	16772	16772		70.716	21.047	1	19747000			5164	1882	2787	2814	5070	5070					-0.06354766398465017
DDWDNRTSY	9	Unmodified	_DDWDNRTSY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	HCT116MG_D190212_S2	2	586.7379760742188	2	586.236167	1170.45778	0.74911	0.00043916	0.014896	8.7328E-06	0.76401	0.00044789	586.2361791410314	31.733	0.25875	31.484	31.354	31.613	-0.24883					7	4	2	0	0	0	0.0082095	1	11730	11730		117.76	57.687	1	27250000			5165	2558	2788	2815	5071	5071					-0.12062994569123475
DDWDNRTSY	9	Unmodified	_DDWDNRTSY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	HCT116MG_D190212_S3	3	586.2362060546875	2	586.236167	1170.45778	0.38415	0.0002252	0.20588	0.00012069	0.59003	0.0003459	586.2361509310061	31.986	0.36378	31.708	31.526	31.89	-0.27841					14	6	3	0	0	0	0.00046881	1	11708	11708		195.45	88.265	1	37841000			5166	2558	2788	2815	5072	5072					-0.12062994569123475
DDWDNRTSY	9	Unmodified	_DDWDNRTSY_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	HCT116MG_D190212_S4	4	586.2368774414062	2	586.236167	1170.45778	0.35417	0.00020763	0.14911	8.7411E-05	0.50327	0.00029504	586.2362082384981	31.991	0.31147	31.616	31.486	31.797	-0.37529					11	5	3	0	0	0	8.7331E-05	1	11637	11637		201.57	94.381	1	17931000			5167	2558	2788	2815	5073	5073					-0.12062994569123475
DDYLDPIGK	9	Unmodified	_DDYLDPIGK_					0	0	0			REV__ENST00000518604.1_1_8:126030245-126031031:+|nuORF	REV__ENST00000518604.1_1_8:126030245-126031031:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2540283203125	2	518.253297	1034.49204	0.40576	0.00021029	0.056831	2.9453E-05	0.4626	0.00023974	518.2532488991046	47.315	0.31025	47.194	47.026	47.336	-0.12175					9	5	2	0	0	0	0.63131	1	18102	18102		9.3831	0	1	23828000	+		5168	11216	2789	2816	5074	5074					-0.023825464102401384
DDYYGYDYHDY	11	Unmodified	_DDYYGYDYHDY_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	MSMS	HCT116MG_D190212_S3	3	744.7633666992188	2	744.764954	1487.51536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.378	1	50.063	49.563	50.563	-0.31525								0	0	0	0.95954	1	18995	18995		1.3295	0.9789	1				5169	2918	2790	2817	5075	5075					-0.20890197154221823
DEAAAVAL	8	Unmodified	_DEAAAVAL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	HCT116MG_D190212_S2	2	759.3888549804688	1	759.38831	758.381034	1.1594	0.0008804	-0.079382	-6.0282E-05	1.08	0.00082012	759.3881509561432	39.33	0.45787	39.252	39.07	39.528	-0.077835					13	8	2	0	0	0	0.13911	1	14784	14784		86.121	19.086	1	92117000			5170	1378	2791	2818	5076	5076					-0.007821413276587919
DEAAAVAL	8	Unmodified	_DEAAAVAL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.Q488Rfs*29|1|0.06|ENSG00000079246|chr2:216141305-216141305|C/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	HCT116MG_D190212_S3	3	759.388916015625	1	759.38831	758.381034	0.49786	0.00037807	-0.17449	-0.0001325	0.32337	0.00024556	759.388009142952	39.535	0.42924	39.234	38.979	39.408	-0.30137					24	14	3	0	0	0	0.13911	1	14654	14654		86.121	22.558	1	67289000			5171	1378	2791	2818	5077	5077					-0.007821413276587919
DEAAFLERL	9	Unmodified	_DEAAFLERL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	532.2747802734375	2	532.274564	1062.53457	0.43969	0.00023404	0.13612	7.2454E-05	0.57581	0.00030649	532.2745299846748	53.523	0.25756	53.523	53.359	53.616	0					10	4	3	0	0	0	0.0034865	1	20500	20500		165.72	99.264	1	86535000			5172	315	2792	2819	5078	5078					0.00580848718004745
DEAAFLERL	9	Unmodified	_DEAAFLERL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	532.2747802734375	2	532.274564	1062.53457	0.35034	0.00018648	0.11733	6.2454E-05	0.46768	0.00024893	532.2745897081879	53.799	0.36156	53.61	53.429	53.79	-0.1894					10	6	2	0	0	0	0.0035631	1	20698	20698		173.69	100.72	1	181330000			5173	315	2792	2819	5079	5079					0.00580848718004745
DEAAFLERL	9	Unmodified	_DEAAFLERL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	532.2749633789062	2	532.274564	1062.53457	0.46979	0.00025006	0.019718	1.0495E-05	0.48951	0.00026055	532.2745328613928	53.938	0.41671	53.639	53.404	53.821	-0.29946					12	7	2	0	0	0	0.0040527	1	20429	20429		149.91	96.081	1	27413000			5174	315	2792	2819	5080	5080					0.00580848718004745
DEAAFLERL	9	Unmodified	_DEAAFLERL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	532.275146484375	2	532.274564	1062.53457	0.51104	0.00027201	0.32395	0.00017243	0.83498	0.00044444	532.2746910635602	53.968	0.26021	53.639	53.457	53.717	-0.32923					6	4	2	0	0	0	0.040027	1	20168	20168		79.596	46.811	1	7706600			5175	315	2792	2819	5081	5081					0.00580848718004745
DEAAFQKL	8	Unmodified	_DEAAFQKL_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S1	1	461.2369079589844	2	461.23745	920.460347	-0.7671	-0.00035382	0.18519	8.5414E-05	-0.58192	-0.0002684	461.23745338887136	38.201	0.36441	38.201	38.019	38.384	0					14	6	3	0	0	0	0.033555	1	14289	14289		141.83	67.404	1	61260000			5176	6044	2793	2820	5082	5082					-0.003064943735239467
DEAAFQKL	8	Unmodified	_DEAAFQKL_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S1	1	921.4669189453125	1	921.467623	920.460347	0.0070489	6.4953E-06	-0.10608	-9.775E-05	-0.099032	-9.1255E-05	921.4674829290548	38.201	0.20844	38.201	38.071	38.279	0					6	3	2	0	0	0	0.033555	1	14325	14325		141.83	67.404	1	7562900			5177	6044	2793	2820	5083	5083					-0.003064943735239467
DEAAFQKL	8	Unmodified	_DEAAFQKL_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S2	2	461.2375183105469	2	461.23745	920.460347	0.040198	1.8541E-05	0.29643	0.00013673	0.33663	0.00015527	461.23747070673187	38.233	0.46863	38.14	37.96	38.428	-0.09301					21	8	4	0	0	0	0.045718	1	14359	14359		128.37	53.943	1	326960000			5178	6044	2793	2820	5084	5084					-0.003064943735239467
DEAAFQKL	8	Unmodified	_DEAAFQKL_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S2	2	921.467529296875	1	921.467623	920.460347	0.70122	0.00064615	-0.061961	-5.7095E-05	0.63926	0.00058906	921.4675234953306	38.233	0.25865	38.14	38.011	38.27	-0.09301					11	4	3	0	0	0	0.01592	1	14365	14365		223.6	97.979	1	73796000			5179	6044	2793	2820	5085	5085					-0.003064943735239467
DEAAFQKL	8	Unmodified	_DEAAFQKL_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S3	3	461.23748779296875	2	461.23745	920.460347	0.32552	0.00015014	0.01411	6.5082E-06	0.33963	0.00015665	461.2373788189977	38.472	0.57191	38.17	37.989	38.561	-0.30137					24	10	4	0	0	0	0.04808	1	14235	14235		125.62	51.202	1	101610000			5180	6044	2793	2820	5086	5086					-0.003064943735239467
DEAAFQKL	8	Unmodified	_DEAAFQKL_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S3	3	921.4683227539062	1	921.467623	920.460347	0.73612	0.00067831	0.11159	0.00010283	0.84771	0.00078114	921.4677404070942	38.472	0.25967	38.17	38.04	38.3	-0.30137					7	4	2	0	0	0	0.01592	1	14276	14276		223.6	111.01	1	8026700			5181	6044	2793	2820	5087	5087					-0.003064943735239467
DEAAFQKL	8	Unmodified	_DEAAFQKL_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S4	4	461.2379455566406	2	461.23745	920.460347	-0.060727	-2.801E-05	0.50916	0.00023484	0.44843	0.00020683	461.2376115878337	38.588	0.4387	38.206	38.051	38.489	-0.38163					16	8	3	0	0	0	0.060005	1	14135	14135		112.59	48.357	1	23905000			5182	6044	2793	2820	5088	5088					-0.003064943735239467
DEAAFQKL	8	Unmodified	_DEAAFQKL_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MATCH	HCT116MG_D190212_S4	4		1	921.467623	920.460347	0.61094	0.00056296	0.040686	3.7491E-05	0.65163	0.00060045	921.4674081004812	38.615	0.1873	38.234	38.096	38.284	-0.38163	0.047334	1.1549E-05	NaN	223.6	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2136300			5183	6044	2793	2820							-0.003064943735239467
DEAANSNN	8	Unmodified	_DEAANSNN_					0	0	0			REV__F13A1|p.P290Hfs*72|1|0.45|ENSG00000124491|chr6:6224790-6224790|G/-|frameshift_variant	REV__F13A1|p.P290Hfs*72|1|0.45|ENSG00000124491|chr6:6224790-6224790|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	834.3232421875	1	834.322416	833.315139	0.8831	0.00073679	0.033685	2.8104E-05	0.91679	0.0007649	834.3225376995834	35.635	0.35972	35.492	35.335	35.695	-0.14245					11	6	2	0	0	0	0.85571	1	13315	13315		4.3292	4.3292	1	32967000	+		5184	16802	2794	2821	5089	5089					-0.10818582240517571
DEAAYIWKV	9	Unmodified	_DEAAYIWKV_					0	0	0		ENSG00000143476|ENST00000366991|DTL;DTL|p.I387Sfs*4|1|0.34|ENSG00000143476|chr1:212080644-212080644|A/-|frameshift_variant	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-MSMS	HCT116MG_D190212_S2	2	547.7796020507812	2	547.779482	1093.54441	0.46673	0.00025567	-0.11924	-6.5315E-05	0.3475	0.00019035	547.7792285686157	51.634	0.25663	51.45	51.321	51.578	-0.18369					10	4	3	0	0	0	0.041798	1	19838	19838		78.728	78.728	1	25807000			5185	3815	2795	2822	5090	5090					0.0013803672338781325
DEAAYIWKV	9	Unmodified	_DEAAYIWKV_					0	0	0		ENSG00000143476|ENST00000366991|DTL;DTL|p.I387Sfs*4|1|0.34|ENSG00000143476|chr1:212080644-212080644|A/-|frameshift_variant	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-SECPEP	HCT116MG_D190212_S3	3	547.5159912109375	2	547.779482	1093.54441	0.41842	0.0002292	0.34498	0.00018897	0.76341	0.00041818	547.7796390048406	51.877	0.20938	51.567	51.384	51.594	-0.30927					5	3	2	0	0	0	0.16566	1	19585	19585		45.7	37.106	1	2177800			5186	3815	2795	2822	5091	5091					0.0013803672338781325
DEADYYCETW	10	Unmodified	_DEADYYCETW_					0	0	0		nc|ENSG00000211639|A0A075B6I1|IGLV4-60	nc|ENSG00000211639|A0A075B6I1|IGLV4-60	nc|ENSG00000211639|A0A075B6I1|IGLV4-60	MSMS	HCT116MG_D190212_S2	2	647.6229858398438	2	647.732068	1293.44958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.149	1	28.833	28.333	29.333	-0.31613								0	0	0	0.95351	1	10665	10665		3.9444	0.94915	1				5187	9616	2796	2823	5092	5092					-0.18540309600803084
DEAEREKQQY	10	Unmodified	_DEAEREKQQY_					0	0	0		ENST00000483417.1_1_19:3575543-3576359:+|nuORF;ENST00000486028.1_1_19:3574329-3575756:+|nuORF;nc|ENSG00000064961|Q9P0W2-2|HMG20B;ENST00000488973.6_1_19:3574329-3578516:+|nuORF;nc|ENSG00000064961|Q9P0W2-3|HMG20B;ENSG00000064961|ENST00000333651|HMG20B	ENST00000483417.1_1_19:3575543-3576359:+|nuORF	ENST00000483417.1_1_19:3575543-3576359:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	648.297607421875	2	648.296756	1294.57896	0.66522	0.00043126	-0.37298	-0.0002418	0.29225	0.00018946	648.2970095697485	17.51	0.20883	17.161	17.082	17.291	-0.34933					5	3	2	0	0	0	0.025008	1	5989	5989		111.31	76.377	1	5734900			5188	1145	2797	2824	5093	5093					-0.056547919264630764
DEAEWVVT	8	Unmodified	_DEAEWVVT_					0	0	0		ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	948.4308471679688	1	948.430903	947.423627	0.89406	0.00084795	-0.095704	-9.0768E-05	0.79835	0.00075718	948.4310649934775	45.868	0.31128	45.557	45.357	45.668	-0.31094					7	5	2	0	0	0	0.21487	1	17198	17198		70.716	26.309	1	4551500			5189	951	2798	2825	5094	5094					-0.05218790990079469
DEAFSLQSI	9	Unmodified	_DEAFSLQSI_					0	0	0			REV__nc|ENSG00000160208|Q14684-2|RRP1B	REV__nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-SECPEP	HCT116MG_D190212_S2	2	505.2639465332031	2	505.245472	1008.47639	0.39589	0.00020002	-0.62679	-0.00031668	-0.2309	-0.00011666	505.24497346729373	42.266	0.20638	42.197	42.068	42.274	-0.068199					5	3	2	0	0	0	0.16908	1	15955	15955		26.884	1.4843	1	9212500	+		5190	12823	2799	2826	5095	5095					-0.027508329272677656
DEAGCPTRPP	10	Unmodified	_DEAGCPTRPP_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.2238159179688	2	521.734748	1041.45494	0.11028	5.7535E-05	-0.0070771	-3.6924E-06	0.1032	5.3842E-05	521.7344876638605	18.195	0.73133	17.838	17.493	18.224	-0.35647					17	13	2	0	0	0	0.2916	1	6126	6126		17.113	10.39	1	4162700			5191	1413	2800	2827	5096	5096					-0.06412541227632573
DEAGGRFVAF	10	Unmodified	_DEAGGRFVAF_					0	0	0		nc|ENSG00000070010|Q92890-1|UFD1;ENSG00000070010|ENST00000263202|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	MULTI-MSMS	HCT116MG_D190212_S1	1	535.2607421875	2	534.759081	1067.50361	0.50431	0.00026969	-0.99822	-0.00053381	-0.49391	-0.00026412	535.2605581761484	46.336	0.20685	46.336	46.182	46.389	0					6	3	2	0	0	0	0.37453	1	17595	17595		43.982	20.833	1	13053000			5192	1228	2801	2828	5097	5097					-0.027443045962399992
DEAGGRFVAF	10	Unmodified	_DEAGGRFVAF_					0	0	0		nc|ENSG00000070010|Q92890-1|UFD1;ENSG00000070010|ENST00000263202|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	MULTI-MSMS	HCT116MG_D190212_S2	2	534.758056640625	2	534.759081	1067.50361	0.44858	0.00023988	-0.092319	-4.9368E-05	0.35626	0.00019051	534.7589957679517	46.346	0.46368	46.234	45.905	46.369	-0.11121					16	8	3	0	0	0	0.036884	1	17659	17659		96.936	62.833	1	46934000			5193	1228	2801	2828	5098	5098					-0.027443045962399992
DEAGGRFVAF	10	Unmodified	_DEAGGRFVAF_					0	0	0		nc|ENSG00000070010|Q92890-1|UFD1;ENSG00000070010|ENST00000263202|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7595825195312	2	534.759081	1067.50361	0.66129	0.00035363	-0.31358	-0.00016769	0.34771	0.00018594	534.758870426062	46.602	0.26048	46.289	46.125	46.386	-0.31344					8	4	2	0	0	0	0.20072	1	17502	17502		59.368	37.622	1	4858800			5194	1228	2801	2828	5099	5099					-0.027443045962399992
DEAHLASVY	9	Unmodified	_DEAHLASVY_					0	0	0		ENST00000506400.1_1_5:64906824-64920129:-|nuORF;nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	ENST00000506400.1_1_5:64906824-64920129:-|nuORF	ENST00000506400.1_1_5:64906824-64920129:-|nuORF	MSMS	HCT116MG_D190212_S3	3	502.7379455566406	2	502.737814	1003.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.554	1	35.255	34.755	35.755	-0.29922								0	0	0	0.038654	1	13116	13116		74.423	44.198	1				5195	2396	2802	2829	5100	5100					-0.040516997244708364
DEAIMYKEY	9	Unmodified	_DEAIMYKEY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	581.2608642578125	2	581.260265	1160.50598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.006	1	33.622	33.122	34.122	-0.38426								0	0	0	0.76694	1	12400	12400		11.64	0	1		+		5196	12706	2803	2830	5101	5101					-0.06785636973449982
DEAKLIAV	8	Unmodified	_DEAKLIAV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	HCT116MG_D190212_S2	2	429.7502746582031	2	429.750193	857.485833	0.055907	2.4026E-05	-0.085541	-3.6761E-05	-0.029634	-1.2735E-05	429.7501372369553	40.969	0.31091	40.899	40.725	41.036	-0.069626					8	5	2	0	0	0	0.33298	1	15486	15486		56.177	21.775	1	17118000			5197	469	2804	2831	5102	5102					0.05138980148910832
DEAKLIAV	8	Unmodified	_DEAKLIAV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	HCT116MG_D190212_S2	2	858.4940185546875	1	858.49311	857.485833	0.74037	0.0006356	0.27105	0.00023269	1.0114	0.00086829	858.4932213505889	40.977	0.25913	40.907	40.777	41.036	-0.069626					7	4	2	0	0	0	0.24264	1	15506	15506		65.235	19.214	1	11573000			5198	469	2804	2831	5103	5103					0.05138980148910832
DEAKLIAV	8	Unmodified	_DEAKLIAV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	HCT116MG_D190212_S3	3	429.7499694824219	2	429.750193	857.485833	0.18203	7.8228E-05	-0.27079	-0.00011637	-0.088765	-3.8147E-05	429.7499310209257	41.168	0.20942	40.866	40.736	40.945	-0.30185					5	3	2	0	0	0	0.33298	1	15326	15326		56.177	16.22	1	5190000			5199	469	2804	2831	5104	5104					0.05138980148910832
DEAKSLIERY	10	Unmodified	_DEAKSLIERY_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1;RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	HCT116MG_D190212_S2	2	612.3167724609375	2	612.31696	1222.61937	0.63752	0.00039036	0.019517	1.1951E-05	0.65704	0.00040231	612.3166637705649	36.386	0.31066	36.258	36.071	36.382	-0.12799					12	5	3	0	0	0	0.26839	1	13626	13626		53.317	25.688	1	41966000			5200	985	2805	2832	5105	5105					0.01696174463972966
DEAMSLWTH	9	Unmodified	_DEAMSLWTH_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.8107299804688	2	545.237124	1088.45969	0.48912	0.00026669	-0.0055429	-3.0222E-06	0.48358	0.00026367	545.2372611151164	46.023	0.30781	45.921	45.71	46.017	-0.1014					9	5	3	0	0	0	0.18552	1	17533	17533		37.974	24.068	1	15319000			5201	30	2806	2833	5106	5106					-0.08099657084881073
DEANIAWKY	9	Unmodified	_DEANIAWKY_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.L629Ffs*8|1|0.4|ENSG00000108510|chr17:62010630-62010631|-/A|frameshift_variant;MED13|p.H726Tfs*9|1|0.29|ENSG00000108510|chr17:61995157-61995158|-/T|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	HCT116MG_D190212_S2	2	555.2672119140625	2	555.266739	1108.51892	0.58895	0.00032703	0.46166	0.00025634	1.0506	0.00058337	555.2668351222658	42.577	0.31211	42.507	42.377	42.689	-0.069984					9	5	2	0	0	0	0.1754	1	16145	16145		43.858	23.405	1	25747000			5202	2164	2807	2834	5107	5107					-0.030994377990509747
DEANIAWKY	9	Unmodified	_DEANIAWKY_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.L629Ffs*8|1|0.4|ENSG00000108510|chr17:62010630-62010631|-/A|frameshift_variant;MED13|p.H726Tfs*9|1|0.29|ENSG00000108510|chr17:61995157-61995158|-/T|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MATCH	HCT116MG_D190212_S1	1		2	555.266739	1108.51892	0.28668	0.00015919	0.37089	0.00020594	0.65757	0.00036513	555.7687198621759	42.613	0.20394	42.613	42.486	42.69	0	0.052787	-9.755E-05	NaN	43.858	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4083800			5203	2164	2807	2834							-0.030994377990509747
DEAPEELTF	9	Unmodified	_DEAPEELTF_					0	0	0		nc|ENSG00000225921|Q9UMY1-2|NOL7;NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	MULTI-MSMS	HCT116MG_D190212_S3	3	1050.462890625	1	1050.4626	1049.45532	0.50465	0.00053011	-0.3993	-0.00041945	0.10534	0.00011066	1050.4624210707198	50.135	0.31232	49.82	49.654	49.967	-0.31525					8	5	2	0	0	0	0.012168	1	18937	18937		108	26.384	1	4585300			5204	6486	2808	2835	5108	5108					-0.06742843026813716
DEAPEELTF	9	Unmodified	_DEAPEELTF_					0	0	0		nc|ENSG00000225921|Q9UMY1-2|NOL7;NOL7|p.N240Mfs*14|1|0.23|ENSG00000225921|chr6:13620769-13620769|A/-|frameshift_variant;NOL7|p.K238Nfs*16|1|0.31|ENSG00000225921|chr6:13620760-13620760|A/-|frameshift_variant;ENSG00000225921|ENST00000451315|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	nc|ENSG00000225921|Q9UMY1-2|NOL7	MULTI-MSMS	HCT116MG_D190212_S4	4	1050.4637451171875	1	1050.4626	1049.45532	0.49586	0.00052088	0.24142	0.00025361	0.73728	0.00077448	1050.462713007762	50.159	0.26006	49.801	49.689	49.949	-0.35878					7	4	2	0	0	0	0.007119	1	18666	18666		120.45	27.628	1	2743100			5205	6486	2808	2835	5109	5109					-0.06742843026813716
DEAPLRAL	8	Unmodified	_DEAPLRAL_					0	0	0		ENSG00000167779|ENST00000301464|IGFBP6	ENSG00000167779|ENST00000301464|IGFBP6	ENSG00000167779|ENST00000301464|IGFBP6	MULTI-MSMS	HCT116MG_D190212_S2	2	442.74517822265625	2	442.745442	883.476331	0.12319	5.454E-05	-0.076789	-3.3998E-05	0.046398	2.0542E-05	442.74534525690837	40.106	0.36362	40.033	39.842	40.206	-0.072838					11	6	2	0	0	0	0.19352	1	15135	15135		74.929	10.693	1	22372000			5206	4958	2809	2836	5110	5110					0.02993211863383749
DEAPLRAL	8	Unmodified	_DEAPLRAL_					0	0	0		ENSG00000167779|ENST00000301464|IGFBP6	ENSG00000167779|ENST00000301464|IGFBP6	ENSG00000167779|ENST00000301464|IGFBP6	MULTI-MSMS	HCT116MG_D190212_S3	3	442.7456359863281	2	442.745442	883.476331	0.051723	2.29E-05	0.16219	7.1809E-05	0.21391	9.4709E-05	442.74548665021194	40.335	0.2604	40.033	39.903	40.163	-0.30161					7	4	2	0	0	0	0.19352	1	14974	14974		74.929	17.458	1	10521000			5207	4958	2809	2836	5111	5111					0.02993211863383749
DEAPPEHSF	9	Unmodified	_DEAPPEHSF_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MULTI-MSMS	HCT116MG_D190212_S3	3	514.71826171875	2	514.719621	1027.42469	0.34329	0.0001767	-2.2497	-0.001158	-1.9065	-0.00098129	514.718052106553	28.488	0.41664	28.283	28.125	28.541	-0.20593					10	7	2	0	0	0	0.12994	1	10334	10334		52.268	14.093	1	3587600			5208	3708	2810	2837	5112	5112					-0.0879257662118107
DEAPVLDVRY	10	Unmodified	_DEAPVLDVRY_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	HCT116MG_D190212_S2	2	588.7991333007812	2	588.798403	1175.58225	0.81761	0.00048141	-0.18679	-0.00010998	0.63082	0.00037143	588.7983761397559	44.75	0.41792	44.665	44.428	44.846	-0.084797					12	7	3	0	0	0	0.023414	1	16994	16994		114.19	70.414	1	40323000			5209	1534	2811	2838	5113	5113					0.0014850291820494022
DEAPVLDVRY	10	Unmodified	_DEAPVLDVRY_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	HCT116MG_D190212_S3	3	588.7996826171875	2	588.798403	1175.58225	0.71278	0.00041968	-0.13473	-7.9329E-05	0.57805	0.00034035	588.7986793053057	44.912	0.29519	44.602	44.489	44.785	-0.30927					6	5	2	0	0	0	0.49415	1	16832	16832		35.612	23.972	1	5826600			5210	1534	2811	2838	5114	5114					0.0014850291820494022
DEAPVLDVRY	10	Unmodified	_DEAPVLDVRY_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	588.798403	1175.58225	0.51926	0.00030574	0.44578	0.00026247	0.96504	0.00056822	588.7985041723716	44.647	0.20832	44.647	44.516	44.724	0	0.0087626	0.00050611	NaN	114.19	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6194100			5211	1534	2811	2838							0.0014850291820494022
DEARAVSSGP	10	Unmodified	_DEARAVSSGP_					0	0	0			REV__ENST00000500185.2_1_11:70244451-70244499:-|nuORF	REV__ENST00000500185.2_1_11:70244451-70244499:-|nuORF	MSMS	HCT116MG_D190212_S2	2	494.751220703125	2	494.738345	987.462138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.923	1	17.567	17.067	18.067	-0.35647								0	0	0	0.89062	1	6130	6130		17.113	0.1706	1		+		5212	16112	2812	2839	5115	5115					-0.032094853555577174
DEARDLIQRY	10	Unmodified	_DEARDLIQRY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S1	1	639.8250732421875	2	639.825483	1277.63641	0.50896	0.00032565	-0.32516	-0.00020805	0.1838	0.0001176	639.8253116747842	36.697	0.26022	36.697	36.574	36.835	0					9	4	3	0	0	0	0.077015	1	13702	13702		78.61	53.619	1	15758000			5213	5321	2813	2840	5116	5116					0.008700950697630105
DEARDLIQRY	10	Unmodified	_DEARDLIQRY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S2	2	639.8259887695312	2	639.825483	1277.63641	0.58838	0.00037646	0.10773	6.8931E-05	0.69611	0.00044539	639.8257501893625	36.691	0.20663	36.576	36.447	36.653	-0.11478					9	3	3	0	0	0	0.024602	1	13735	13735		112.04	73.426	1	49440000			5214	5321	2813	2840	5117	5117					0.008700950697630105
DEARDLIQRY	10	Unmodified	_DEARDLIQRY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S2	2	426.8861083984375	3	426.886081	1277.63641	0.12857	5.4884E-05	-0.2575	-0.00010992	-0.12893	-5.504E-05	426.8860703309557	36.676	0.20663	36.561	36.447	36.653	-0.11478					8	3	3	0	0	0	0.05194	1	13754	13754		68.436	55.58	1	24982000			5215	5321	2813	2840	5118	5118					0.008700950697630105
DEARFAGH	8	Unmodified	_DEARFAGH_					0	0	0		nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2	nc|ENSG00000111674|P09104-2|ENO2	nc|ENSG00000111674|P09104-2|ENO2	MSMS	HCT116MG_D190212_S2	2	451.7094421386719	2	451.709391	901.404229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.783	1	19.408	18.908	19.908	-0.37503								0	0	0	0.65264	1	6879	6879		34.402	16.267	1				5216	2306	2814	2841	5119	5119					-0.05041702490325406
DEARIQKV	8	Unmodified	_DEARIQKV_					0	0	0		nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MSMS	HCT116MG_D190212_S1	1	479.7699279785156	2	479.769448	957.524344	0.19766	9.4831E-05	0.61234	0.00029378	0.81	0.00038861	479.7696874922496	21.306	0.21257	21.306	21.173	21.385	0					5	3	2	0	0	0	0.42581	2	7501	7458;7501		47.749	7.7914	1	3646300			5217	2883	2815	2842	5120;5121	5121					0.04388285783431911
DEARIQKV	8	Unmodified	_DEARIQKV_					0	0	0		nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MSMS	HCT116MG_D190212_S2	2	479.7697448730469	2	479.769448	957.524344	0.082146	3.9411E-05	0.84239	0.00040415	0.92454	0.00044356	479.769873505148	21.838	0.20822	21.453	21.323	21.531	-0.38503					8	3	3	0	0	0	0.065113	1	7708	7708		107.19	61.166	1	23812000			5218	2883	2815	2842	5122	5122					0.04388285783431911
DEARIQKV	8	Unmodified	_DEARIQKV_					0	0	0		nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MSMS	HCT116MG_D190212_S3	3	479.7696228027344	2	479.769448	957.524344	0.074314	3.5653E-05	0.38855	0.00018642	0.46287	0.00022207	479.7698149163722	21.07	0.20813	21.105	21.027	21.235	0.034473					5	3	2	0	0	0	0.4699	1	7352	7352		43.772	5.7984	1	3941100			5219	2883	2815	2842	5123	5123					0.04388285783431911
DEARVQYEGF	10	Unmodified	_DEARVQYEGF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1;ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	HCT116MG_D190212_S2	2	607.7802124023438	2	607.277835	1212.54112	0.88053	0.00053472	0.11487	6.9759E-05	0.9954	0.00060448	607.2777603916605	39.205	0.2581	39.127	38.968	39.226	-0.077835					8	4	2	0	0	0	0.017942	1	14763	14763		125.04	93.769	1	25388000			5220	4797	2816	2843	5124	5124					-0.05665258121302941
DEAVAYGA	8	Unmodified	_DEAVAYGA_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000044574|ENST00000324460|HSPA5;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000044574|ENST00000324460|HSPA5	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	HCT116MG_D190212_S2	2	795.352294921875	1	795.351925	794.344648	0.99965	0.00079508	0.49713	0.00039539	1.4968	0.0011905	795.3520903229056	27.611	0.41242	27.269	27.037	27.449	-0.34201					11	7	2	0	0	0	0.083541	1	10044	10044		98.807	31.772	1	22842000			5221	2228;6330;1021	2817	2844	5125	5125					-0.06075018224373707
DEAVAYGA	8	Unmodified	_DEAVAYGA_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000044574|ENST00000324460|HSPA5;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000044574|ENST00000324460|HSPA5	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	HCT116MG_D190212_S3	3	795.352783203125	1	795.351925	794.344648	0.89735	0.00071371	0.086729	6.898E-05	0.98408	0.00078269	795.3519676824744	27.627	0.51984	27.439	27.257	27.777	-0.18847					18	9	3	0	0	0	0.23352	1	9970	9970		67.035	10.494	1	16239000			5222	2228;6330;1021	2817	2844	5126	5126					-0.06075018224373707
DEAVAYGA	8	Unmodified	_DEAVAYGA_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000044574|ENST00000324460|HSPA5;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000044574|ENST00000324460|HSPA5	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	HCT116MG_D190212_S4	4	795.3525390625	1	795.351925	794.344648	0.93299	0.00074205	-0.33567	-0.00026698	0.59731	0.00047507	795.3517623340449	27.728	0.25009	27.407	27.252	27.502	-0.32157					8	4	2	0	0	0	0.29313	1	9953	9953		59.795	10.126	1	3086400			5223	2228;6330;1021	2817	2844	5127	5127					-0.06075018224373707
DEAYMNKV	8	Unmodified	_DEAYMNKV_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	484.7801208496094	2	485.220943	968.427332	0.14694	7.1297E-05	-0.20906	-0.00010144	-0.062119	-3.0142E-05	485.22073062766316	29.875	0.20821	29.875	29.737	29.945	0					7	3	3	0	0	0	0.14246	2	10948	10948;10956		85.357	37.011	1	11097000		+	5224	558;541	2818	2845	5128;5129	5128					-0.05814444487873516
DEAYMNKV	8	Unmodified	_DEAYMNKV_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	485.22125244140625	2	485.220943	968.427332	-0.16747	-8.126E-05	0.29862	0.00014489	0.13115	6.3634E-05	485.22097074071957	30.183	0.30954	29.899	29.718	30.028	-0.28453					11	5	3	0	0	0	0.076688	1	11088	11088		100.37	52.026	1	62900000		+	5225	558;541	2818	2845	5130	5130					-0.05814444487873516
DEAYMNKV	8	Unmodified	_DEAYMNKV_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	485.2210693359375	2	485.220943	968.427332	0.17204	8.3478E-05	0.32692	0.00015863	0.49897	0.00024211	485.22091528686724	30.298	0.27257	30.048	29.861	30.134	-0.24946					10	5	3	0	0	0	0.10976	1	11037	11037		92.822	44.476	1	22224000		+	5226	558;541	2818	2845	5131	5131					-0.05814444487873516
DECCDCVGMC	10	Unmodified	_DECCDCVGMC_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MSMS	HCT116MG_D190212_S1	1	539.1453247070312	2	539.144348	1076.27414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8664	1	2.8664	2.3664	3.3664	0								0	0	0	0.97116	1	863	863		0	0	1				5227	3013	2819	2846	5132	5132					-0.2609421025415486
DECCDCVGMC	10	Unmodified	_DECCDCVGMC_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MSMS	HCT116MG_D190212_S1	1	539.1495361328125	2	539.144348	1076.27414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.0696	1	6.0696	5.5696	6.5696	0								0	0	0	0.97116	1	1827	1827		0	0	1				5228	3013	2819	2846	5133	5133					-0.2609421025415486
DECCDCVGMC	10	Unmodified	_DECCDCVGMC_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MSMS	HCT116MG_D190212_S1	1	539.1449584960938	2	539.144348	1076.27414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.106	1	10.106	9.6064	10.606	0								0	0	0	0.97116	1	3086	3086		0	0	1				5229	3013	2819	2846	5134	5134					-0.2609421025415486
DECCDCVGMC	10	Unmodified	_DECCDCVGMC_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MSMS	HCT116MG_D190212_S2	2	539.5032958984375	2	539.144348	1076.27414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7348	1	5.5866	5.0866	6.0866	-0.14816								0	0	0	0.97116	1	1815	1815		0	0	1				5230	3013	2819	2846	5135	5135					-0.2609421025415486
DECCDCVGMC	10	Unmodified	_DECCDCVGMC_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MSMS	HCT116MG_D190212_S2	2	539.5035400390625	2	539.144348	1076.27414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.057	1	11.768	11.268	12.268	-0.28953								0	0	0	0.97116	1	3923	3923		0	0	1				5231	3013	2819	2846	5136	5136					-0.2609421025415486
DECCDCVGMC	10	Unmodified	_DECCDCVGMC_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MSMS	HCT116MG_D190212_S2	2	539.1444702148438	2	539.144348	1076.27414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.96	1	12.663	12.163	13.163	-0.29721								0	0	0	0.97116	1	4241	4241		0	0	1				5232	3013	2819	2846	5137	5137					-0.2609421025415486
DECCDCVGMC	10	Unmodified	_DECCDCVGMC_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MSMS	HCT116MG_D190212_S3	3	539.1441650390625	2	539.144348	1076.27414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4609	1	5.4784	4.9784	5.9784	0.017489								0	0	0	0.97116	1	1652	1652		0	0	1				5233	3013	2819	2846	5138	5138					-0.2609421025415486
DECCDCVGMC	10	Unmodified	_DECCDCVGMC_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MSMS	HCT116MG_D190212_S3	3	539.1480712890625	2	539.144348	1076.27414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5006	1	5.5181	5.0181	6.0181	0.017489								0	0	0	0.97116	1	1662	1662		0	0	1				5234	3013	2819	2846	5139	5139					-0.2609421025415486
DECCDCVGMC	10	Unmodified	_DECCDCVGMC_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MSMS	HCT116MG_D190212_S4	4	539.1448974609375	2	539.144348	1076.27414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.483	1	13.321	12.821	13.821	-0.16233								0	0	0	0.97116	1	4230	4230		0	0	1				5235	3013	2819	2846	5140	5140					-0.2609421025415486
DEDAYKKQF	9	Unmodified	_DEDAYKKQF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	HCT116MG_D190212_S2	2	572.2691040039062	2	572.269478	1142.5244	0.55172	0.00031573	-0.48452	-0.00027728	0.0672	3.8457E-05	572.2690173752951	25.947	0.31173	25.578	25.446	25.758	-0.36914					10	5	3	0	0	0	0.35842	1	9412	9412		24.991	5.734	1	20111000			5236	2762;8236	2820	2847	5141	5141					-0.04115759007231645
DEDAYKKQF	9	Unmodified	_DEDAYKKQF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5;ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	HCT116MG_D190212_S3	3	572.2694702148438	2	572.269478	1142.5244	0.58529	0.00033494	-0.74699	-0.00042748	-0.1617	-9.2534E-05	572.2689567473723	25.765	0.2606	25.637	25.494	25.755	-0.12795					6	4	2	0	0	0	0.0201	1	9233	9233		96.367	58.191	1	5242400			5237	2762;8236	2820	2847	5142	5142					-0.04115759007231645
DEDCHGSC	8	Unmodified	_DEDCHGSC_					0	0	0		nc|ENSG00000138315|Q8WWZ8-2|OIT3;ENSG00000138315|ENST00000334011|OIT3	nc|ENSG00000138315|Q8WWZ8-2|OIT3	nc|ENSG00000138315|Q8WWZ8-2|OIT3	MULTI-MSMS	HCT116MG_D190212_S3	3	865.2477416992188	1	865.245093	864.237817	0.69096	0.00059785	1.7353	0.0015015	2.4263	0.0020993	865.2470250732227	22.888	0.56066	22.87	22.699	23.26	-0.018869					18	10	3	0	0	0	0.87576	1	8064	8064		0.79363	0	1	6412900			5238	3549	2821	2848	5143	5143					-0.19973259772700658
DEDCHGSC	8	Unmodified	_DEDCHGSC_					0	0	0		nc|ENSG00000138315|Q8WWZ8-2|OIT3;ENSG00000138315|ENST00000334011|OIT3	nc|ENSG00000138315|Q8WWZ8-2|OIT3	nc|ENSG00000138315|Q8WWZ8-2|OIT3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	865.245093	864.237817	0.57479	0.00049733	2.7494	0.0023789	3.3242	0.0028762	865.2474125899663	23.06	0.52248	22.823	22.655	23.178	-0.23758	-0.023396	0.00018388	NaN	0.79363	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2923400			5239	3549	2821	2848							-0.19973259772700658
DEDDSEYEDC	10	Unmodified	_DEDDSEYEDC_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MSMS	HCT116MG_D190212_S1	1	610.1845703125	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.16	1	37.16	36.66	37.66	0								0	0	0	0.96911	1	13875	13875		0.45834	0.15131	1				5240	1004	2822	2849	5144	5144					-0.2497837735631947
DEDDSEYEDC	10	Unmodified	_DEDDSEYEDC_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MSMS	HCT116MG_D190212_S2	2	610.1849975585938	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.661	1	40.592	40.092	41.092	-0.069626								0	0	0	0.96377	1	15341	15341		1.6526	1.0511	1				5241	1004	2822	2849	5145	5145					-0.2497837735631947
DEDDSEYEDC	10	Unmodified	_DEDDSEYEDC_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MSMS	HCT116MG_D190212_S3	3	610.1843872070312	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.574	1	44.266	43.766	44.766	-0.30759								0	0	0	0.96937	1	16667	16667		0.40072	0.40072	1				5242	1004	2822	2849	5146	5146					-0.2497837735631947
DEDDSEYEDC	10	Unmodified	_DEDDSEYEDC_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MSMS	HCT116MG_D190212_S3	3	610.1842041015625	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.135	1	44.825	44.325	45.325	-0.30927								0	0	0	0.96911	1	16890	16890		0.45834	0.45834	1				5243	1004	2822	2849	5147	5147					-0.2497837735631947
DEDKLYQGVRE	11	Unmodified	_DEDKLYQGVRE_					0	0	0			REV__ENST00000505842.5_1_4:25404608-25415394:+|nuORF	REV__ENST00000505842.5_1_4:25404608-25415394:+|nuORF	MSMS	HCT116MG_D190212_S3	3	676.3309936523438	2	676.328056	1350.64156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.981	1	40.679	40.179	41.179	-0.30185								0	0	0	0.9387	1	15231	15231		12.241	4.0851	1		+		5244	10630	2823	2850	5148	5148					-0.019736458583111016
DEDLFTDLY	9	Unmodified	_DEDLFTDLY_					0	0	0		ENST00000540725.5_1_11:62623069-62623132:-|nuORF	ENST00000540725.5_1_11:62623069-62623132:-|nuORF	ENST00000540725.5_1_11:62623069-62623132:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	565.7482299804688	2	565.748044	1129.48154	0.57669	0.00032626	-0.16759	-9.4811E-05	0.40911	0.00023145	565.7480062788267	57.314	0.15597	57.019	56.941	57.097	-0.29465					4	2	2	0	0	0	0.32162	1	21535	21535		28.487	20.577	1	3122900			5245	8691	2824	2851	5149	5149					-0.07802573855315131
DEDLKKAY	8	Unmodified	_DEDLKKAY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12;ENST00000398991.3_1_4:100831524-100867699:-|nuORF;ENST00000567680.1_1_15:66064063-66064450:-|nuORF;DNAJB14|p.F206Lfs*48|2|0.34|ENSG00000164031|chr4:99908730-99908730|A/-|frameshift_variant;nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14;ENST00000474664.5_1_4:100844167-100867674:-|nuORF	ENSG00000148719|ENST00000444643|DNAJB12;ENST00000474664.5_1_4:100844167-100867674:-|nuORF	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MSMS	HCT116MG_D190212_S2	2	491.2479553222656	2	491.248015	980.481476	0.14821	7.2809E-05	-0.038893	-1.9106E-05	0.10932	5.3703E-05	491.2479733599117	21.786	0.26034	21.401	21.271	21.531	-0.38503					6	4	2	0	0	0	0.17427	2	7717	7662;7717		78.728	0	1	7591500			5246	4031;8191	2825	2852	5150;5151	5151					-0.009545290646656213
DEDLKKAY	8	Unmodified	_DEDLKKAY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12;ENST00000398991.3_1_4:100831524-100867699:-|nuORF;ENST00000567680.1_1_15:66064063-66064450:-|nuORF;DNAJB14|p.F206Lfs*48|2|0.34|ENSG00000164031|chr4:99908730-99908730|A/-|frameshift_variant;nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14;ENST00000474664.5_1_4:100844167-100867674:-|nuORF	ENSG00000148719|ENST00000444643|DNAJB12;ENST00000474664.5_1_4:100844167-100867674:-|nuORF	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MATCH	HCT116MG_D190212_S3	3		2	491.248015	980.481476	0.036833	1.8094E-05	0.17866	8.7768E-05	0.2155	0.00010586	491.2482910041828	21.29	0.15809	21.309	21.219	21.377	0.018446	-0.045941	0.00019504	NaN	78.728	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1807800			5247	4031;8191	2825	2852							-0.009545290646656213
DEDLVARVF	9	Unmodified	_DEDLVARVF_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;ENST00000465525.6_1_1:29647190-29652170:+|nuORF;TRNAU1AP-PTPRU|3|fusion;TRNAU1AP-PTPRU|2|fusion;TRNAU1AP-PTPRU|1|fusion	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MSMS	HCT116MG_D190212_S2	2	532.2750854492188	2	532.274564	1062.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.063	1	52.874	52.374	53.374	-0.18922								0	0	0	0.094105	1	20398	20398		57.722	13.864	1				5248	1110	2826	2853	5152	5152					0.0058084871798200766
DEDLVARVF	9	Unmodified	_DEDLVARVF_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;ENST00000465525.6_1_1:29647190-29652170:+|nuORF;TRNAU1AP-PTPRU|3|fusion;TRNAU1AP-PTPRU|2|fusion;TRNAU1AP-PTPRU|1|fusion	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	HCT116MG_D190212_S3	3	532.274658203125	2	532.274564	1062.53457	0.6575	0.00034997	0.47598	0.00025335	1.1335	0.00060332	532.2743307440153	53.162	0.26171	52.859	52.721	52.983	-0.30305					10	4	3	0	0	0	0.35842	1	20141	20141		24.991	10.153	1	3079200			5249	1110	2826	2853	5153	5153					0.0058084871798200766
DEDLYWYVY	9	Unmodified	_DEDLYWYVY_					0	0	0			REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	REV__tr|U7SJI8|U7SJI8_FUSNUPenicillin-bindingprotein1COS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02062PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	633.2721557617188	2	633.271687	1264.52882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.135	1	14.809	14.309	15.309	-0.32684								0	0	0	0.76877	1	5007	5007		5.2307	1.2863	1		+		5250	17694	2827	2854	5154	5154					-0.09286294584308052
DEDQWEEK	8	Unmodified	_DEDQWEEK_					0	0	0			REV__ENST00000595916.5_1_19:3880927-3893658:+|nuORF	REV__ENST00000595916.5_1_19:3880927-3893658:+|nuORF	MSMS	HCT116MG_D190212_S3	3	360.14984130859375	3	360.148971	1077.42508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.155	1	11.203	10.703	11.703	0.04739								0	0	0	0.8837	1	3411	3411		0.40072	0.16487	1		+		5251	10002	2828	2855	5155	5155					-0.11053201691993308
DEDRAVQV	8	Unmodified	_DEDRAVQV_					0	0	0		EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP	EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant	EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	466.22735595703125	2	466.227613	930.440674	0.41381	0.00019293	-0.34509	-0.00016089	0.068716	3.2037E-05	466.22746264631854	25.752	0.31275	25.624	25.494	25.807	-0.12795					8	5	2	0	0	0	0.3588	1	9242	9242		53.833	17.706	1	3390600			5252	748	2829	2856	5156	5156					-0.02732870384272701
DEDRAVQV	8	Unmodified	_DEDRAVQV_					0	0	0		EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP	EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant	EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	466.227613	930.440674	0.39804	0.00018558	-0.12531	-5.8422E-05	0.27273	0.00012716	466.22755499073327	25.99	0.26006	25.621	25.498	25.758	-0.36914	-0.019048	-3.4336E-05	NaN	53.833	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6354500			5253	748	2829	2856							-0.02732870384272701
DEDRAVQV	8	Unmodified	_DEDRAVQV_					0	0	0		EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP	EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant	EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	466.227613	930.440674	-0.040859	-1.905E-05	0.58104	0.0002709	0.54018	0.00025185	466.22824871121753	25.965	0.31226	25.675	25.516	25.828	-0.29023	0.034757	0.0006243	NaN	53.833	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1517700			5254	748	2829	2856							-0.02732870384272701
DEDRLDPNAG	10	Unmodified	_DEDRLDPNAG_					0	0	0			REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	551.2588500976562	2	551.243992	1100.47343	0.46548	0.00025659	-0.3518	-0.00019393	0.11368	6.2664E-05	551.2430253348806	36.623	0.31022	36.508	36.292	36.602	-0.11478					9	5	3	0	0	0	0.77151	1	13701	13701		14.405	3.5815	1	7037300	+		5255	11013	2830	2857	5157	5157					-0.07278708052103866
DEDRLLVVF	9	Unmodified	_DEDRLLVVF_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;ENST00000463046.5_1_2:61435991-61439052:-|nuORF	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2982788085938	2	553.298039	1104.58152	0.43149	0.00023875	0.21954	0.00012147	0.65104	0.00036022	553.2981200936842	56.787	0.21226	56.608	56.475	56.687	-0.17904					7	3	3	0	0	0	0.16143	1	21938	21938		57.722	31.454	1	21064000			5256	2470	2831	2858	5158	5158					0.033417082691585165
DEDRLLVVF	9	Unmodified	_DEDRLLVVF_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;ENST00000463046.5_1_2:61435991-61439052:-|nuORF	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-MATCH	HCT116MG_D190212_S3	3		2	553.298039	1104.58152	0.57229	0.00031665	0.5839	0.00032307	1.1562	0.00063972	553.2980859785565	56.93	0.15631	56.651	56.521	56.677	-0.27913	0.021206	0.00040162	NaN	57.722	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1378400			5257	2470	2831	2858							0.033417082691585165
DEDSCTAQP	9	Unmodified	_DEDSCTAQP_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MULTI-SECPEP	HCT116MG_D190212_S2	2	482.7325744628906	2	483.179472	964.34439	-0.040015	-1.9334E-05	4.3806	0.0021166	4.3406	0.0020973	483.18053864304005	18.941	0.36549	18.571	18.366	18.732	-0.3695					10	6	2	0	0	0	0.23301	1	6547	6547		15.847	8.558	1	2311300			5258	3708	2832	2859	5159	5159					-0.13920806006547082
DEDSECCSDD	10	Unmodified	_DEDSECCSDD_					0	0	0		ZNF597|p.R324C|3|0.32|ENSG00000167981|chr16:3436729-3436729|G/A|missense_variant	ZNF597|p.R324C|3|0.32|ENSG00000167981|chr16:3436729-3436729|G/A|missense_variant	ZNF597|p.R324C|3|0.32|ENSG00000167981|chr16:3436729-3436729|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	559.105712890625	2	559.150251	1116.28595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.583	1	48.439	47.939	48.939	-0.1437								0	0	0	0.96911	1	18566	18566		0.45834	0.45834	1				5259	18733	2833	2860	5160	5160					-0.26754275433972907
DEDSNDND	8	Unmodified	_DEDSNDND_					0	0	0		nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15;ENST00000549101.1_1_12:62794944-62798152:+|nuORF	nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	MSMS	HCT116MG_D190212_S2	2	462.1467590332031	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.727	1	44.642	44.142	45.142	-0.084797								0	0	0	0.8837	1	16992	16992		2.5775	0	1				5260	3366	2834	2861	5161	5161					-0.18543503927890015
DEDTFHLY	8	Unmodified	_DEDTFHLY_					0	0	0			REV__ENST00000510393.5_1_1:16083186-16084742:+|nuORF	REV__ENST00000510393.5_1_1:16083186-16084742:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	520.3162231445312	2	520.221997	1038.42944	0.084998	4.4218E-05	0.18905	9.8346E-05	0.27404	0.00014256	520.222067860009	47.875	0.4686	47.56	47.359	47.828	-0.31551					13	8	2	0	0	0	0.33021	1	18096	18096		2.5775	0	1	4745900	+		5261	16176	2835	2862	5162	5162					-0.08823692478404155
DEDTGTFRIY	10	Unmodified	_DEDTGTFRIY_					0	0	0		ENST00000473375.1_1_3:180669142-180671642:+|nuORF;FXR1|p.K274Rfs*23|1|0.23|ENSG00000114416|chr3:180953776-180953776|A/-|frameshift_variant;FXR1|p.N300Mfs*8|1|0.11|ENSG00000114416|chr3:180957832-180957832|A/-|frameshift_variant;nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	608.778076171875	2	608.777667	1215.54078	0.4022	0.00024485	-0.021272	-1.295E-05	0.38093	0.0002319	608.777559089448	44.67	0.26058	44.67	44.516	44.777	0					7	4	2	0	0	0	0.036884	1	16922	16922		96.936	47.003	1	10898000			5262	2420	2836	2863	5163	5163					-0.05836677841125493
DEDTGTFRIY	10	Unmodified	_DEDTGTFRIY_					0	0	0		ENST00000473375.1_1_3:180669142-180671642:+|nuORF;FXR1|p.K274Rfs*23|1|0.23|ENSG00000114416|chr3:180953776-180953776|A/-|frameshift_variant;FXR1|p.N300Mfs*8|1|0.11|ENSG00000114416|chr3:180957832-180957832|A/-|frameshift_variant;nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	608.7778930664062	2	608.777667	1215.54078	0.82935	0.00050489	0.0016607	1.011E-06	0.83101	0.0005059	608.7775606748263	44.725	0.41792	44.64	44.428	44.846	-0.084801					16	7	3	0	0	0	0.00070447	1	16993	16993		181.69	113.61	1	50772000			5263	2420	2836	2863	5164	5164					-0.05836677841125493
DEDTGTFRIY	10	Unmodified	_DEDTGTFRIY_					0	0	0		ENST00000473375.1_1_3:180669142-180671642:+|nuORF;FXR1|p.K274Rfs*23|1|0.23|ENSG00000114416|chr3:180953776-180953776|A/-|frameshift_variant;FXR1|p.N300Mfs*8|1|0.11|ENSG00000114416|chr3:180957832-180957832|A/-|frameshift_variant;nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	608.7775268554688	2	608.777667	1215.54078	0.65719	0.00040008	-0.015159	-9.2287E-06	0.64203	0.00039085	608.777462888716	44.96	0.29519	44.651	44.489	44.785	-0.30927					12	5	4	0	0	0	0.019498	1	16825	16825		121.35	71.413	1	14238000			5264	2420	2836	2863	5165	5165					-0.05836677841125493
DEDTGTFRIY	10	Unmodified	_DEDTGTFRIY_					0	0	0		ENST00000473375.1_1_3:180669142-180671642:+|nuORF;FXR1|p.K274Rfs*23|1|0.23|ENSG00000114416|chr3:180953776-180953776|A/-|frameshift_variant;FXR1|p.N300Mfs*8|1|0.11|ENSG00000114416|chr3:180957832-180957832|A/-|frameshift_variant;nc|ENSG00000114416|P51114-3|FXR1;FXR1|p.T526Sfs*13|1|0.07|ENSG00000114416|chr3:180970330-180970331|-/TCTGTATTATC|frameshift_variant;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	608.7786254882812	2	608.777667	1215.54078	0.96935	0.00059012	-0.043926	-2.6741E-05	0.92543	0.00056338	608.7779188351212	45.037	0.20566	44.664	44.529	44.735	-0.37326					7	5	2	0	0	0	0.31077	1	16610	16610		49.527	21.898	1	4909900			5265	2420	2836	2863	5166	5166					-0.05836677841125493
DEDVTGQEDY	10	Unmodified	_DEDVTGQEDY_					0	0	0			REV__ENST00000557141.1_1_14:68265771-68265831:+|nuORF	REV__ENST00000557141.1_1_14:68265771-68265831:+|nuORF	MSMS	HCT116MG_D190212_S3	3	585.7615356445312	2	585.725298	1169.43604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.415	1	45.104	44.604	45.604	-0.31094								0	0	0	0.94107	1	17003	17003		6.7232	0	1		+		5266	14255	2837	2864	5167	5167					-0.14189844108341276
DEDWEEQREER	11	Unmodified	_DEDWEEQREER_					0	0	0		ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	MSMS	HCT116MG_D190212_S3	3	507.5505676269531	3	507.546453	1519.61753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.093	1	49.778	49.278	50.278	-0.31525								0	0	0	0.96111	1	18881	18881		0.50596	0.051438	1				5267	4495	2838	2865	5168	5168					-0.12149531082604881
DEEDDEESESK	11	Unmodified	_DEEDDEESESK_					0	0	0			REV__nc|ENSG00000108312|P17480-2|UBTF	REV__nc|ENSG00000108312|P17480-2|UBTF	MSMS	HCT116MG_D190212_S3	3	437.82843017578125	3	437.828403	1310.46338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.944	1	11.999	11.499	12.499	0.055045								0	0	0	0.96149	1	3692	3692		0.08335	0	1		+		5268	11342	2839	2866	5169	5169					-0.1794340535864194
DEEDRRYF	8	Unmodified	_DEEDRRYF_					0	0	0		ENSG00000122958|ENST00000263559|VPS26A	ENSG00000122958|ENST00000263559|VPS26A	ENSG00000122958|ENST00000263559|VPS26A	MULTI-MSMS	HCT116MG_D190212_S1	1	565.787841796875	2	565.249077	1128.4836	0.30155	0.00017045	0.45035	0.00025456	0.7519	0.00042501	565.2491297375491	25.513	0.26084	25.513	25.353	25.614	0					9	4	3	0	0	0	0.81821	1	9138	9138		9.3474	2.6243	1	8458100			5269	2784	2840	2867	5170	5170					-0.07550100326852771
DEEEDEEEWVY	11	Unmodified	_DEEEDEEEWVY_					0	0	0			REV__nc|ENSG00000146063|Q8WV44-4|TRIM41	REV__nc|ENSG00000146063|Q8WV44-4|TRIM41	MSMS	HCT116MG_D190212_S1	1	736.27392578125	2	736.272809	1470.53106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.632	1	36.632	36.132	37.132	0								0	0	0	0.95954	1	13661	13661		1.3295	0	1		+		5270	12471	2841	2868	5171	5171					-0.18537955427837005
DEEEDHYSTD	10	Unmodified	_DEEEDHYSTD_					0	0	0			REV__ENSG00000109445|ENST00000262990|ZNF330	REV__ENSG00000109445|ENST00000262990|ZNF330	MSMS	HCT116MG_D190212_S1	1	620.2177124023438	2	620.217837	1238.42112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.052	1	25.052	24.552	25.552	0								0	0	0	0.94107	1	8995	8995		6.7232	0	1		+		5271	11370	2842	2869	5172	5172					-0.1885533597637732
DEEEEEIEA	9	Unmodified	_DEEEEEIEA_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	546.3132934570312	2	546.714398	1091.41424	0.38753	0.00021187	-0.67488	-0.00036897	-0.28735	-0.0001571	546.7140892298667	41.079	0.20721	41.011	40.83	41.037	-0.068199					5	3	2	0	0	0	0.24622	1	15451	15451		7.2892	0	1	8987200			5272	934	2843	2870	5173	5173					-0.1278064885693766
DEEENDDIMEF	11	Unmodified	_DEEENDDIMEF_					0	0	0			REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	MSMS	HCT116MG_D190212_S3	3	693.2581176757812	2	693.256105	1384.49766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.987	1	52.683	52.183	53.183	-0.30378								0	0	0	0.95636	1	20044	20044		2.9952	1.3426	1		+		5273	10505	2844	2871	5174	5174					-0.17921280471409773
DEEEWLIHY	9	Unmodified	_DEEEWLIHY_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1;ENST00000496016.1_1_22:24483558-24487884:+|nuORF	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	617.2749633789062	2	617.274761	1232.53497	0.27891	0.00017217	-0.98154	-0.00060588	-0.70262	-0.00043371	617.2739676082356	53.489	0.25674	53.3	53.172	53.429	-0.1894					10	4	3	0	0	0	0.0082751	1	20595	20595		117.6	57.525	1	19940000			5274	1651	2845	2872	5175	5175					-0.07199776352786103
DEEGKGAVY	9	Unmodified	_DEEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S1	1	484.2221374511719	2	484.221997	966.429441	0.20033	9.7002E-05	0.23201	0.00011234	0.43234	0.00020935	484.22201161590743	22.872	0.31236	22.872	22.689	23.001	0					12	5	3	0	0	0	0.0063854	1	8123	8123		125.53	54.396	1	17082000			5275	855	2846	2873	5176	5176					-0.05511692478421537
DEEGKGAVY	9	Unmodified	_DEEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S2	2	484.2219543457031	2	484.221997	966.429441	0.11158	5.4029E-05	0.5543	0.0002684	0.66587	0.00032243	484.22212898199143	23.242	0.41545	22.856	22.674	23.089	-0.3852					18	7	3	0	0	0	0.0096523	1	8268	8268		114.2	59.428	1	106280000			5276	855	2846	2873	5177	5177					-0.05511692478421537
DEEGKGAVY	9	Unmodified	_DEEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S2	2	967.4371337890625	1	967.436717	966.429441	0.56916	0.00055063	-0.09334	-9.03E-05	0.47582	0.00046033	967.4366011886536	23.223	0.25977	22.838	22.726	22.986	-0.3852					7	4	2	0	0	0	0.0063854	1	8279	8279		125.53	70.756	1	20930000			5277	855	2846	2873	5178	5178					-0.05511692478421537
DEEGKGAVY	9	Unmodified	_DEEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S3	3	484.22216796875	2	484.221997	966.429441	0.091522	4.4317E-05	0.53313	0.00025815	0.62465	0.00030247	484.22205920205903	22.84	0.45629	22.822	22.647	23.104	-0.018869					22	8	3	0	0	0	0.49914	1	8021	8021		16.942	3.4344	1	39749000			5278	855	2846	2873	5179	5179					-0.05511692478421537
DEEGKGAVY	9	Unmodified	_DEEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S3	3	967.4385986328125	1	967.436717	966.429441	0.50061	0.00048431	0.051876	5.0187E-05	0.55249	0.00053449	967.4372508639722	22.824	0.30001	22.805	22.699	22.999	-0.018869					9	5	2	0	0	0	0.0096523	1	8044	8044		114.2	55.523	1	4811700			5279	855	2846	2873	5180	5180					-0.05511692478421537
DEEGKGAVY	9	Unmodified	_DEEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S4	4	484.2219543457031	2	484.221997	966.429441	-0.10839	-5.2486E-05	0.64908	0.0003143	0.54069	0.00026181	484.22211519980476	23.078	0.31481	22.841	22.706	23.021	-0.23758					11	5	3	0	0	0	0.040027	1	8066	8066		79.596	41.622	1	9239800			5280	855	2846	2873	5181	5181					-0.05511692478421537
DEEGLKLTF	9	Unmodified	_DEEGLKLTF_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	HCT116MG_D190212_S2	2	526.26904296875	2	526.268947	1050.52334	0.41029	0.00021592	-0.39478	-0.00020776	0.015512	8.1632E-06	526.2686844833264	51.549	0.25734	51.366	51.218	51.475	-0.18368					6	4	2	0	0	0	0.051033	1	19807	19807		74.2	36.226	1	11804000			5281	432	2847	2874	5182	5182					0.00010026623840531101
DEEGLKLTF	9	Unmodified	_DEEGLKLTF_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MATCH	HCT116MG_D190212_S3	3		2	526.268947	1050.52334	0.37273	0.00019616	-0.57969	-0.00030507	-0.20696	-0.00010892	526.2687832232905	51.772	0.15683	51.463	51.332	51.489	-0.30927	0.048487	-4.5487E-05	NaN	74.2	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2270500			5282	432	2847	2874							0.00010026623840531101
DEEIIVKAM	9	Unmodified	_DEEIIVKAM_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	HCT116MG_D190212_S3	3	524.273681640625	2	524.273175	1046.5318	0.42459	0.0002226	0.00073844	3.8714E-07	0.42532	0.00022299	524.273145232378	42.64	0.20824	42.337	42.249	42.457	-0.30352					6	3	2	0	0	0	0.030723	1	15910	15910		85.642	61.621	1	3747100			5283	2776	2848	2875	5183	5183					0.01039257268826077
DEEIIVKAM	9	Unmodified	_DEEIIVKAM_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MATCH	HCT116MG_D190212_S2	2		2	524.273175	1046.5318	0.72649	0.00038088	-0.60779	-0.00031865	0.1187	6.223E-05	524.2727131788275	42.717	0.20796	42.647	42.481	42.689	-0.069981	0.1553	-0.00025533	NaN	85.642	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11444000			5284	2776	2848	2875							0.01039257268826077
DEEIKRAY	8	Unmodified	_DEEIKRAY_					0	0	0		DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	512.2588500976562	2	512.258914	1022.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.111	1	22.111	21.611	22.611	0								0	0	0	0.67883	1	7812	7812		32.305	8.2849	1				5285	709	2849	2876	5184	5184					-0.007077243161006663
DEEIKRAY	8	Unmodified	_DEEIKRAY_					0	0	0		DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	512.2590942382812	2	512.258914	1022.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.566	1	22.181	21.681	22.681	-0.3852								0	0	0	0.69969	1	8001	8001		30.637	14.789	1				5286	709	2849	2876	5185	5185					-0.007077243161006663
DEEIKRAY	8	Unmodified	_DEEIKRAY_					0	0	0		DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	512.259033203125	2	512.258914	1022.50327	0.17679	9.056E-05	0.25035	0.00012824	0.42713	0.0002188	512.2588581481202	21.966	0.20834	21.967	21.834	22.042	0.00074577					8	3	3	0	0	0	0.068362	1	7705	7705		103.75	71.443	1	6049200			5287	709	2849	2876	5186	5186					-0.007077243161006663
DEEIKRAY	8	Unmodified	_DEEIKRAY_					0	0	0		DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;DNAJB1|p.K195Hfs*4|1|0.03|ENSG00000132002|chr19:14516676-14516677|-/AAGAGAGATGG|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	512.258914	1022.50327	0.20734	0.00010621	0.28566	0.00014633	0.49301	0.00025255	512.2590681927793	22.274	0.1558	22.046	21.936	22.091	-0.22777	0.039766	2.2654E-05	NaN	103.75	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1297600			5288	709	2849	2876							-0.007077243161006663
DEELLGDGHSY	11	Unmodified	_DEELLGDGHSY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	617.7644653320312	2	617.764757	1233.51496	0.42443	0.0002622	-0.27752	-0.00017144	0.14691	9.0755E-05	617.7646626719218	37.819	0.31313	37.819	37.602	37.916	0					8	5	2	0	0	0	0.02915	1	14154	14154		126.57	95.929	1	12798000			5289	4411	2850	2877	5187	5187					-0.0924557208340957
DEELLGDGHSY	11	Unmodified	_DEELLGDGHSY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MSMS	HCT116MG_D190212_S2	2	617.764892578125	2	617.764757	1233.51496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.883	1	37.79	37.29	38.29	-0.09301								0	0	0	1.5811E-05	1	14214	14214		126.57	95.298	1				5290	4411	2850	2877	5188	5188					-0.0924557208340957
DEELLGDGHSY	11	Unmodified	_DEELLGDGHSY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	617.765380859375	2	617.764757	1233.51496	0.48473	0.00029945	-0.0018516	-1.1439E-06	0.48288	0.00029831	617.7646121182058	38.056	0.31996	37.754	37.617	37.937	-0.30137					19	7	4	0	0	0	0.009615	1	14068	14068		137.42	99.248	1	40562000			5291	4411	2850	2877	5189	5189					-0.0924557208340957
DEELLGDGHSY	11	Unmodified	_DEELLGDGHSY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MSMS	HCT116MG_D190212_S4	4	617.7646484375	2	617.764757	1233.51496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.183	1	37.801	37.301	38.301	-0.38283								0	0	0	0.0008031	1	13984	13984		103.35	68.421	1				5292	4411	2850	2877	5190	5190					-0.0924557208340957
DEENLPEKL	9	Unmodified	_DEENLPEKL_					0	0	0		ENST00000478257.1_1_9:133972232-133987208:+|nuORF;nc|ENSG00000126878|Q9BQI0-4|AIF1L;ENST00000472942.5_1_9:133986989-133989557:+|nuORF;nc|ENSG00000126878|Q9BQI0-3|AIF1L;ENSG00000126878|ENST00000247291|AIF1L;nc|ENSG00000126878|Q9BQI0-2|AIF1L	ENST00000478257.1_1_9:133972232-133987208:+|nuORF	ENST00000478257.1_1_9:133972232-133987208:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	543.7700805664062	2	543.769311	1085.52407	0.52891	0.00028761	-0.0045364	-2.4667E-06	0.52438	0.00028514	543.7694013542358	36.794	0.2579	36.679	36.499	36.757	-0.11478					6	4	2	0	0	0	0.32978	2	13787	13787;13799		27.629	14.586	1	18218000			5293	2951	2851	2878	5191;5192	5191					-0.015271787270876303
DEENNPLETE	10	Unmodified	_DEENNPLETE_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MSMS	HCT116MG_D190212_S1	1	595.23388671875	2	595.246397	1188.47824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.536	1	24.536	24.036	25.036	0								0	0	0	0.90475	1	8788	8788		14.838	0	1				5294	9427	2852	2879	5193	5193					-0.10845868699971106
DEENQSMEGDE	11	Unmodified	_DEENQSMEGDE_					0	0	0		STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion	STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	428.1501770019531	3	428.150711	1281.4303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.954	1	11.664	11.164	12.164	-0.28953								0	0	0	0.96157	1	3883	3883		0.073264	0	1				5295	2595	2853	2880	5194	5194					-0.19915310682335985
DEENRDLHVG	10	Unmodified	_DEENRDLHVG_					0	0	0			REV__ENST00000551090.1_1_12:93252174-93252306:+|nuORF	REV__ENST00000551090.1_1_12:93252174-93252306:+|nuORF	MSMS	HCT116MG_D190212_S1	1	592.3744506835938	2	592.270541	1182.52653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.526	1	24.526	24.026	25.026	0								0	0	0	0.92272	1	8784	8784		10.824	2.9138	1		+		5296	13213	2854	2881	5195	5195					-0.05743330269456237
DEEQDDIVSAD	11	Unmodified	_DEEQDDIVSAD_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S4	4	618.797119140625	2	618.249137	1234.48372	-0.10792	-6.6721E-05	-0.53994	-0.00033381	-0.64786	-0.00040054	618.2488681605157	15.545	0.70109	15.383	15.124	15.825	-0.16173					17	13	2	0	0	0	0.74191	1	5039	5039		4.1895	0.59301	1	2612100			5297	1937	2855	2882	5196	5196					-0.12414189908190565
DEEQIAKY	8	Unmodified	_DEEQIAKY_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-MSMS	HCT116MG_D190212_S1	1	498.23822021484375	2	498.237647	994.460741	0.42378	0.00021114	0.66461	0.00033113	1.0884	0.00054228	498.2378902831641	27.878	0.15629	27.878	27.8	27.956	0					4	2	2	0	0	0	0.66231	1	10160	10160		26.884	9.9414	1	9147000			5298	1509	2856	2883	5197	5197					-0.0367111944434555
DEEQIAKY	8	Unmodified	_DEEQIAKY_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7313537597656	2	498.237647	994.460741	0.39434	0.00019648	0.56888	0.00028344	0.96323	0.00047992	498.23761239281225	28.281	0.31106	27.952	27.77	28.081	-0.32987					11	5	3	0	0	0	0.0082805	1	10301	10301		166.45	88.298	1	53736000			5299	1509	2856	2883	5198	5198					-0.0367111944434555
DEEQIAKY	8	Unmodified	_DEEQIAKY_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2377624511719	2	498.237647	994.460741	0.27132	0.00013518	0.34669	0.00017273	0.61801	0.00030792	498.2376430097957	28.252	0.46971	28.046	27.863	28.333	-0.20593					13	8	2	0	0	0	0.02101	1	10217	10217		152.41	74.263	1	43228000			5300	1509	2856	2883	5199	5199					-0.0367111944434555
DEEQIAKY	8	Unmodified	_DEEQIAKY_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-MSMS	HCT116MG_D190212_S4	4	498.2378845214844	2	498.237647	994.460741	0.4146	0.00020657	0.065341	3.2556E-05	0.47994	0.00023912	498.2374486393679	28.376	0.31233	28.045	27.908	28.22	-0.33138					12	5	3	0	0	0	0.02101	1	10204	10204		152.41	84.332	1	10579000			5301	1509	2856	2883	5200	5200					-0.0367111944434555
DEEQNYVHV	9	Unmodified	_DEEQNYVHV_					0	0	0			REV__ENSG00000136045|ENST00000412830|PWP1	REV__ENSG00000136045|ENST00000412830|PWP1	MSMS	HCT116MG_D190212_S1	1	566.7052001953125	2	566.74891	1131.48327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.735	1	23.735	23.235	24.235	0								0	0	0	0.71969	1	8466	8466		18.135	1.1927	1		+		5302	12118	2857	2884	5201	5201					-0.07721520046720798
DEEQQLALS	9	Unmodified	_DEEQQLALS_					0	0	0			REV__EVC2|p.Q581Pfs*3|1|0.3|ENSG00000173040|chr4:5628705-5628706|-/A|frameshift_variant	REV__EVC2|p.Q581Pfs*3|1|0.3|ENSG00000173040|chr4:5628705-5628706|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	516.7457275390625	2	516.745836	1031.47712	0.14311	7.3953E-05	-0.034573	-1.7865E-05	0.10854	5.6088E-05	516.7455324933322	38.523	0.2599	38.222	38.092	38.352	-0.30137					6	4	2	0	0	0	0.53593	1	14306	14306		14.838	0	1	3738400	+		5303	13413	2858	2885	5202	5202					-0.03736038278248088
DEEQVFHFY	9	Unmodified	_DEEQVFHFY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	HCT116MG_D190212_S1	1	607.2612915039062	2	607.261653	1212.50875	0.5007	0.00030405	-0.18034	-0.00010951	0.32036	0.00019454	607.2615592640242	52.357	0.30888	52.357	52.176	52.485	0					7	5	2	0	0	0	0.26031	1	20052	20052		46.021	23.285	1	10868000			5304	1810	2859	2886	5203	5203					-0.08900045524273992
DEEQVFHFY	9	Unmodified	_DEEQVFHFY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	HCT116MG_D190212_S2	2	607.261474609375	2	607.261653	1212.50875	0.71496	0.00043417	0.031792	1.9306E-05	0.74675	0.00045348	607.2616055091509	52.639	0.4129	52.451	52.244	52.657	-0.18726					18	7	3	0	0	0	0.0095327	1	20218	20218		137.42	89.675	1	44857000			5305	1810	2859	2886	5204	5204					-0.08900045524273992
DEEQVFHFY	9	Unmodified	_DEEQVFHFY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	HCT116MG_D190212_S3	3	607.2620849609375	2	607.261653	1212.50875	0.62812	0.00038143	0.14663	8.9044E-05	0.77475	0.00047048	607.2616794284041	52.792	0.31359	52.486	52.3	52.613	-0.3064					10	5	3	0	0	0	0.05892	1	19991	19991		88.904	56.118	1	6922500			5306	1810	2859	2886	5205	5205					-0.08900045524273992
DEERFVKMSV	10	Unmodified	_DEERFVKMSV_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-1|RNF17	REV__nc|ENSG00000132972|Q9BXT8-1|RNF17	MSMS	HCT116MG_D190212_S1	1	620.3054809570312	2	620.305538	1238.59652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.139	1	24.139	23.639	24.639	0								0	0	0	0.90892	1	8628	8628		13.906	3.0821	1		+		5307	12012	2860	2887	5206	5206					-0.013231679251703099
DEERLWGE	8	Unmodified	_DEERLWGE_					0	0	0		ENSG00000152049|ENST00000281830|KCNE4;nc|ENSG00000152049|Q8WWG9|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	MULTI-MSMS	HCT116MG_D190212_S3	3	517.2332153320312	2	517.232896	1032.45124	0.35604	0.00018415	-0.058921	-3.0476E-05	0.29712	0.00015368	517.232843838972	25.608	0.52058	25.48	25.286	25.807	-0.12795					12	9	2	0	0	0	0.73076	1	9203	9203		19.439	2.3261	1	2667900			5308	4132	2861	2888	5207	5207					-0.06368887729854578
DEERMITHF	9	Unmodified	_DEERMITHF_					0	0	0		ENST00000568067.1_1_15:42503908-42510186:-|nuORF;nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A	ENST00000568067.1_1_15:42503908-42510186:-|nuORF	ENST00000568067.1_1_15:42503908-42510186:-|nuORF	MSMS	HCT116MG_D190212_S1	1	588.9639282226562	2	589.268955	1176.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.97	1	37.97	37.47	38.47	0								0	0	0	0.76718	1	14202	14202		10.824	0.75	1				5309	1912	2862	2889	5208	5208					-0.057842966478119706
DEERMITHF	9	Unmodified	_DEERMITHF_					0	0	0		ENST00000568067.1_1_15:42503908-42510186:-|nuORF;nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A	ENST00000568067.1_1_15:42503908-42510186:-|nuORF	ENST00000568067.1_1_15:42503908-42510186:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	589.2691650390625	2	589.268955	1176.52336	0.3532	0.00020813	0.29827	0.00017576	0.65147	0.00038389	589.2691518546279	38.027	0.20626	37.934	37.805	38.011	-0.09301					8	3	3	0	0	0	0.011034	1	14298	14298		110.79	79.524	1	32191000			5310	1912	2862	2889	5209	5209					-0.057842966478119706
DEERMITHF	9	Unmodified	_DEERMITHF_					0	0	0		ENST00000568067.1_1_15:42503908-42510186:-|nuORF;nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A	ENST00000568067.1_1_15:42503908-42510186:-|nuORF	ENST00000568067.1_1_15:42503908-42510186:-|nuORF	MSMS	HCT116MG_D190212_S3	3	589.2692260742188	2	589.268955	1176.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.3	1	37.998	37.498	38.498	-0.30137								0	0	0	0.038892	1	14183	14183		74.2	42.931	1				5311	1912	2862	2889	5210	5210					-0.057842966478119706
DEERVHHLV	9	Unmodified	_DEERVHHLV_					0	0	0		PCDHGA7|p.E203D|1|0.17|ENSG00000253537|chr5:141383508-141383508|G/T|missense_variant	PCDHGA7|p.E203D|1|0.17|ENSG00000253537|chr5:141383508-141383508|G/T|missense_variant	PCDHGA7|p.E203D|1|0.17|ENSG00000253537|chr5:141383508-141383508|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	567.9868774414062	2	567.288537	1132.56252	0.45293	0.00025694	-0.043607	-2.4738E-05	0.40932	0.0002322	567.2887114181749	24.247	0.26205	24.247	24.098	24.36	0					8	4	2	0	0	0	0.24195	1	8638	8638		12.532	5.2423	1	4686300			5312	9735	2863	2890	5211	5211					0.001541716980682395
DEERVHHLV	9	Unmodified	_DEERVHHLV_					0	0	0		PCDHGA7|p.E203D|1|0.17|ENSG00000253537|chr5:141383508-141383508|G/T|missense_variant	PCDHGA7|p.E203D|1|0.17|ENSG00000253537|chr5:141383508-141383508|G/T|missense_variant	PCDHGA7|p.E203D|1|0.17|ENSG00000253537|chr5:141383508-141383508|G/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	567.288537	1132.56252	0.5084	0.00028841	0.47887	0.00027166	0.98727	0.00056007	567.28857373925	24.544	0.57232	24.164	23.979	24.551	-0.38003	-0.10819	0.00057884	NaN	7.9102	20	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33179000			5313	9735	2863	2890							0.001541716980682395
DEETDMVV	8	Unmodified	_DEETDMVV_					0	0	0			REV__nc|ENSG00000214960|A4D126-2|CRPPA	REV__nc|ENSG00000214960|A4D126-2|CRPPA	MSMS	HCT116MG_D190212_S1	1	469.19451904296875	2	469.19459	936.374628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.008	1	29.008	28.508	29.508	0								0	0	0	0.8837	1	10586	10586		6.3541	3.4649	1		+		5314	14275	2864	2891	5212	5212					-0.09610447341344752
DEETVYNVF	9	Unmodified	_DEETVYNVF_					0	0	0		TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant;ENSG00000116830|ENST00000369466|TTF2	TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant	TTF2|p.K1134Efs*22|1|0.25|ENSG00000116830|chr1:117101426-117101427|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	557.9114990234375	2	558.248212	1114.48187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.941	1	53.611	53.111	54.111	-0.32923								0	0	0	0.76694	1	20154	20154		11.64	5.2862	1				5315	2543	2865	2892	5213	5213					-0.07079154135476529
DEFAKLQDY	9	Unmodified	_DEFAKLQDY_					0	0	0		nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1;nc|ENSG00000188343|A1XBS5-5|CIBAR1;ENST00000523577.5_1_8:94712794-94713716:+|nuORF	nc|ENSG00000188343|A1XBS5-2|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	MULTI-MSMS	HCT116MG_D190212_S3	3	565.2657470703125	2	564.764029	1127.5135	0.24268	0.00013706	-0.19212	-0.0001085	0.050563	2.8556E-05	564.7635915544415	41.688	0.32114	41.385	41.303	41.625	-0.30257					13	9	2	0	0	0	0.0047539	1	15513	15513		139.78	95.924	1	16228000			5316	5979	2866	2893	5214	5214					-0.045151613815278324
DEFAKLQDY	9	Unmodified	_DEFAKLQDY_					0	0	0		nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1;nc|ENSG00000188343|A1XBS5-5|CIBAR1;ENST00000523577.5_1_8:94712794-94713716:+|nuORF	nc|ENSG00000188343|A1XBS5-2|CIBAR1	nc|ENSG00000188343|A1XBS5-2|CIBAR1	MULTI-MSMS	HCT116MG_D190212_S4	4	564.7633666992188	2	564.764029	1127.5135	0.35958	0.00020308	-0.58994	-0.00033318	-0.23035	-0.00013009	564.7634738528571	41.745	0.28362	41.369	41.297	41.58	-0.37637					14	9	3	0	0	0	0.0068427	1	15312	15312		121.53	69.266	1	9234500			5317	5979	2866	2893	5215	5215					-0.045151613815278324
DEFEFLEKA	9	Unmodified	_DEFEFLEKA_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25;ENST00000570473.5_1_17:54973221-54981672:-|nuORF;TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1127.5245361328125	1	1127.52553	1126.51826	0.55211	0.00062251	0.096708	0.00010904	0.64881	0.00073156	1127.52522437416	51.801	0.26453	51.801	51.704	51.968	0					7	4	2	0	0	0	0.019537	1	19852	19852		96.936	35.578	1	7385500			5318	2724	2867	2894	5216	5216					-0.03994277238757604
DEFEFLEKA	9	Unmodified	_DEFEFLEKA_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25;ENST00000570473.5_1_17:54973221-54981672:-|nuORF;TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	564.2670288085938	2	564.266404	1126.51826	0.33802	0.00019073	0.41046	0.00023161	0.74848	0.00042234	564.2667968529212	51.942	0.31709	51.942	51.704	52.021	0					9	5	3	0	0	0	0.0080847	1	19867	19867		118.07	70.32	1	39238000			5319	2724	2867	2894	5217	5217					-0.03994277238757604
DEFEFLEKA	9	Unmodified	_DEFEFLEKA_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25;ENST00000570473.5_1_17:54973221-54981672:-|nuORF;TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2655029296875	2	564.266404	1126.51826	0.66816	0.00037702	-0.25301	-0.00014276	0.41515	0.00023426	564.2660097299445	52.251	0.36166	52.064	51.78	52.142	-0.18725					15	6	3	0	0	0	0.011132	2	20063	20060;20063		110.55	62.804	1	36436000			5320	2724	2867	2894	5218;5219	5219					-0.03994277238757604
DEFEFLEKA	9	Unmodified	_DEFEFLEKA_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25;ENST00000570473.5_1_17:54973221-54981672:-|nuORF;TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2664184570312	2	564.266404	1126.51826	0.45151	0.00025477	-0.21512	-0.00012138	0.23639	0.00013339	564.2663620536816	52.371	0.57465	52.064	51.83	52.404	-0.30639					19	10	3	0	0	0	0.014023	1	19794	19794		103.42	61.58	1	23585000			5321	2724	2867	2894	5220	5220					-0.03994277238757604
DEFEFLEKA	9	Unmodified	_DEFEFLEKA_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25;ENST00000570473.5_1_17:54973221-54981672:-|nuORF;TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	564.7682495117188	2	564.266404	1126.51826	0.33422	0.00018859	0.23381	0.00013193	0.56803	0.00032052	564.2664253450608	52.385	0.31245	52.043	51.882	52.195	-0.34238					14	5	3	0	0	0	0.0201	1	19538	19538		96.367	54.527	1	11829000			5322	2724	2867	2894	5221	5221					-0.03994277238757604
DEFEFLEKA	9	Unmodified	_DEFEFLEKA_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25;ENST00000570473.5_1_17:54973221-54981672:-|nuORF;TRIM25|p.S361Vfs*20|1|0.13|ENSG00000121060|chr17:56901426-56901426|G/-|frameshift_variant	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1127.52553	1126.51826	0.51539	0.00058111	0.91869	0.0010358	1.4341	0.001617	1127.5266686665248	52.355	0.26007	52.009	51.827	52.087	-0.34538	0.077665	0.0008398	NaN	96.936	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1414100			5323	2724	2867	2894							-0.03994277238757604
DEFEKEETF	9	Unmodified	_DEFEKEETF_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	587.0674438476562	2	587.250951	1172.48735	1.0397	0.00061054	-0.58112	-0.00034126	0.45854	0.00026928	587.2507134858084	37.501	0.2028	37.501	37.348	37.55	0					5	3	2	0	0	0	0.016412	1	13991	13991		100.09	32.747	1	4300600			5324	5641	2868	2895	5222	5222					-0.09199475343666563
DEFEKEETF	9	Unmodified	_DEFEKEETF_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	587.7531127929688	2	587.250951	1172.48735	0.59565	0.0003498	0.42778	0.00025121	1.0234	0.00060101	587.2512064226715	37.739	0.17419	37.437	37.37	37.545	-0.30137					30	20	2	0	0	0	0.016412	2	13963	13963;13966		100.09	32.747	1	58335000			5325	5641	2868	2895	5223;5224	5223					-0.09199475343666563
DEFEKEETF	9	Unmodified	_DEFEKEETF_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S4	4	587.7529907226562	2	587.250951	1172.48735	0.322	0.00018909	0.08631	5.0686E-05	0.40831	0.00023978	587.2508979809446	37.841	0.15265	37.458	37.401	37.554	-0.38283					27	17	2	0	0	0	0.016412	2	13858	13858;13861		100.09	42.619	1	25428000			5326	5641	2868	2895	5225;5226	5225					-0.09199475343666563
DEFESHRIL	9	Unmodified	_DEFESHRIL_					0	0	0		ENST00000463195.5_1_7:99702669-99703627:+|nuORF;ENSG00000221838|ENST00000359593|AP4M1	ENST00000463195.5_1_7:99702669-99703627:+|nuORF	ENST00000463195.5_1_7:99702669-99703627:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	573.2833251953125	2	573.28292	1144.55129	0.27552	0.00015795	0.15945	9.1408E-05	0.43496	0.00024936	573.2831154765688	37.152	0.30902	37.048	36.87	37.179	-0.10392					11	5	3	0	0	0	0.23993	1	13945	13945		37.075	16.66	1	29457000			5327	6466	2869	2896	5227	5227					-0.015206503960371265
DEFESHRIL	9	Unmodified	_DEFESHRIL_					0	0	0		ENST00000463195.5_1_7:99702669-99703627:+|nuORF;ENSG00000221838|ENST00000359593|AP4M1	ENST00000463195.5_1_7:99702669-99703627:+|nuORF	ENST00000463195.5_1_7:99702669-99703627:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	573.28292	1144.55129	0.53991	0.00030952	0.86031	0.0004932	1.4002	0.00080272	573.7849969913245	37.357	0.26017	37.055	36.925	37.185	-0.30137	-0.019104	0.00053952	NaN	37.075	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4610100			5328	6466	2869	2896							-0.015206503960371265
DEFGHTSQL	9	Unmodified	_DEFGHTSQL_					0	0	0		SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	517.2332763671875	2	517.232896	1032.45124	0.5029	0.00026012	0.23562	0.00012187	0.73852	0.00038199	517.2330095664283	33.636	0.20773	33.443	33.327	33.534	-0.19297					6	3	2	0	0	0	0.012496	1	12502	12502		107.19	21.915	1	26498000			5329	1799	2870	2897	5228	5228					-0.06368887729854578
DEFGHTSQL	9	Unmodified	_DEFGHTSQL_					0	0	0		SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	517.23291015625	2	517.232896	1032.45124	0.26352	0.0001363	0.055897	2.8912E-05	0.31942	0.00016521	517.2328969769122	33.827	0.31134	33.537	33.356	33.667	-0.29013					10	5	2	0	0	0	0.0045841	1	12436	12436		142.08	38.331	1	8438100			5330	1799	2870	2897	5229	5229					-0.06368887729854578
DEFGHTSQL	9	Unmodified	_DEFGHTSQL_					0	0	0		SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	517.2322998046875	2	517.232896	1032.45124	0.43037	0.0002226	-0.52222	-0.00027011	-0.09185	-4.7508E-05	517.232448688479	33.887	0.20745	33.502	33.362	33.569	-0.38426					7	3	3	0	0	0	0.016701	1	12364	12364		99.799	21.65	1	2421600			5331	1799	2870	2897	5230	5230					-0.06368887729854578
DEFGHTSQL	9	Unmodified	_DEFGHTSQL_					0	0	0		SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	517.232896	1032.45124	0.48775	0.00025228	-0.54725	-0.00028305	-0.059495	-3.0773E-05	517.2325198249985	33.461	0.15602	33.461	33.348	33.504	0	-0.024789	-0.00053319	NaN	142.08	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4610700			5332	1799	2870	2897							-0.06368887729854578
DEFHISVI	8	Unmodified	_DEFHISVI_					0	0	0		ENSG00000110721|ENST00000265689|CHKA;nc|ENSG00000110721|P35790-2|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MSMS	HCT116MG_D190212_S2	2	480.24493408203125	2	480.245275	958.475997	0.060569	2.9088E-05	0.16429	7.8897E-05	0.22485	0.00010799	480.2453052643146	53.166	0.31158	52.977	52.809	53.121	-0.18922					13	5	3	0	0	0	0.17804	1	20430	20430		77.984	25.291	1	42811000			5333	2258	2871	2898	5231	5231					-0.004902078564896328
DEFHISVI	8	Unmodified	_DEFHISVI_					0	0	0		ENSG00000110721|ENST00000265689|CHKA;nc|ENSG00000110721|P35790-2|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MSMS	HCT116MG_D190212_S2	2	959.4838256835938	1	959.483273	958.475997	0.48023	0.00046077	-0.0055275	-5.3035E-06	0.4747	0.00045547	959.4832319271865	53.143	0.26027	52.954	52.809	53.07	-0.18922					6	4	2	0	0	0	0.19608	1	20458	20458		74.423	24.754	1	10096000			5334	2258	2871	2898	5232	5232					-0.004902078564896328
DEFHISVI	8	Unmodified	_DEFHISVI_					0	0	0		ENSG00000110721|ENST00000265689|CHKA;nc|ENSG00000110721|P35790-2|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MSMS	HCT116MG_D190212_S3	3	480.2454528808594	2	480.245275	958.475997	0.38347	0.00018416	-0.059465	-2.8558E-05	0.32401	0.0001556	480.2451424027001	53.348	0.4184	53.045	52.826	53.244	-0.30305					10	7	2	0	0	0	0.21487	1	20202	20202		70.716	27.748	1	3925300			5335	2258	2871	2898	5233	5233					-0.004902078564896328
DEFHISVI	8	Unmodified	_DEFHISVI_					0	0	0		ENSG00000110721|ENST00000265689|CHKA;nc|ENSG00000110721|P35790-2|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MSMS	HCT116MG_D190212_S4	4	480.2452392578125	2	480.245275	958.475997	0.35552	0.00017074	0.16945	8.1378E-05	0.52497	0.00025211	480.24532320988095	53.379	0.26052	53.045	52.879	53.139	-0.33473					6	4	2	0	0	0	0.74206	1	19965	19965		18.135	8.7875	1	2007100			5336	2258	2871	2898	5234	5234					-0.004902078564896328
DEFHNPLAY	9	Unmodified	_DEFHNPLAY_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2510986328125	2	553.251089	1104.48762	0.32996	0.00018255	-0.024222	-1.3401E-05	0.30574	0.00016915	553.2510537273217	46.168	0.56515	46.066	45.607	46.172	-0.10139					15	10	2	0	0	0	0.012168	1	17596	17596		108	70.023	1	14993000			5337	669	2872	2899	5235	5235					-0.06044010833147695
DEFHNPLAY	9	Unmodified	_DEFHNPLAY_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2513427734375	2	553.251089	1104.48762	0.66647	0.00036872	0.023688	1.3106E-05	0.69016	0.00038183	553.752602253495	46.383	0.43309	46.071	45.902	46.335	-0.31238					12	9	2	0	0	0	0.069315	2	17430	17430;17483		65.235	44.781	1	7749000			5338	669	2872	2899	5236;5237	5236					-0.06044010833147695
DEFHNPLAY	9	Unmodified	_DEFHNPLAY_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	553.2511596679688	2	553.251089	1104.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.605	1	46.233	45.733	46.733	-0.37134								0	0	0	0.76759	1	17211	17211		9.3831	1.2276	1				5339	669	2872	2899	5238	5238					-0.06044010833147695
DEFIAHRL	8	Unmodified	_DEFIAHRL_					0	0	0		ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	500.2713928222656	2	500.764166	999.513779	0.27402	0.00013722	0.06414	3.2119E-05	0.33816	0.00016934	500.7640770130256	36.542	0.31244	36.241	36.041	36.353	-0.30113					10	5	3	0	0	0	0.21611	1	13494	13494		50.855	26.181	1	5201800			5340	1864	2873	2900	5239	5239					0.01400303128991709
DEFIAHRL	8	Unmodified	_DEFIAHRL_					0	0	0		ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	MSMS	HCT116MG_D190212_S4	4	500.7641296386719	2	500.764166	999.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.726	1	36.341	35.841	36.841	-0.38486								0	0	0	0.81076	1	13451	13451		21.747	8.2388	1				5341	1864	2873	2900	5240	5240					0.01400303128991709
DEFIGEKTF	9	Unmodified	_DEFIGEKTF_					0	0	0		ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant;ENSG00000152348|ENST00000282185|ATG10;nc|ENSG00000152348|Q9H0Y0-2|ATG10	ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant	ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	543.2610473632812	2	543.261122	1084.50769	0.50941	0.00027674	0.026845	1.4584E-05	0.53626	0.00029133	543.260923189734	43.728	0.31299	43.422	43.24	43.553	-0.30616					7	5	2	0	0	0	0.082877	1	16360	16360		61.602	25.475	1	4617200			5342	210	2874	2901	5241	5241					-0.03118259893199138
DEFIGEKTF	9	Unmodified	_DEFIGEKTF_					0	0	0		ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant;ENSG00000152348|ENST00000282185|ATG10;nc|ENSG00000152348|Q9H0Y0-2|ATG10	ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant	ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	543.261122	1084.50769	0.45132	0.00024518	-0.053125	-2.8861E-05	0.39819	0.00021632	543.2612226183622	43.867	0.15534	43.493	43.364	43.519	-0.37433	0.035484	-6.1126E-05	NaN	61.602	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2397500			5343	210	2874	2901							-0.03118259893199138
DEFIIKTV	8	Unmodified	_DEFIIKTV_					0	0	0		ENST00000486048.2_1_1:151204736-151206704:+|nuORF;PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000107242|O14986-3|PIP5K1B;nc|ENSG00000143398|Q99755-4|PIP5K1A;PIP5K1C|p.A494Gfs*44|1|0.16|ENSG00000186111|chr19:3644116-3644117|-/C|frameshift_variant;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000107242|O14986-2|PIP5K1B;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	482.77081298828125	2	482.771126	963.527698	0.29379	0.00014184	-0.60662	-0.00029286	-0.31283	-0.00015102	482.77086666685295	46.532	0.46558	46.532	46.337	46.803	0					10	8	2	0	0	0	0.065113	1	17675	17675		107.19	32.258	1	30624000			5344	2107	2875	2902	5242	5242					0.044475358374370444
DEFIIKTV	8	Unmodified	_DEFIIKTV_					0	0	0		ENST00000486048.2_1_1:151204736-151206704:+|nuORF;PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000107242|O14986-3|PIP5K1B;nc|ENSG00000143398|Q99755-4|PIP5K1A;PIP5K1C|p.A494Gfs*44|1|0.16|ENSG00000186111|chr19:3644116-3644117|-/C|frameshift_variant;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000107242|O14986-2|PIP5K1B;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7712707519531	2	482.771126	963.527698	0.50316	0.00024291	0.058575	2.8278E-05	0.56173	0.00027119	482.77105524314607	46.607	0.41145	46.496	46.317	46.729	-0.11122					18	7	4	0	0	0	0.054052	1	17761	17761		118.89	33.623	1	75784000			5345	2107	2875	2902	5243	5243					0.044475358374370444
DEFIIKTV	8	Unmodified	_DEFIIKTV_					0	0	0		ENST00000486048.2_1_1:151204736-151206704:+|nuORF;PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000107242|O14986-3|PIP5K1B;nc|ENSG00000143398|Q99755-4|PIP5K1A;PIP5K1C|p.A494Gfs*44|1|0.16|ENSG00000186111|chr19:3644116-3644117|-/C|frameshift_variant;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000107242|O14986-2|PIP5K1B;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	482.77117919921875	2	482.771126	963.527698	0.28077	0.00013555	0.027541	1.3296E-05	0.30831	0.00014884	482.77107160638	46.83	0.57342	46.516	46.333	46.907	-0.31405					24	10	4	0	0	0	0.037913	1	17571	17571		137.42	48.47	1	47868000			5346	2107	2875	2902	5244	5244					0.044475358374370444
DEFIIKTV	8	Unmodified	_DEFIIKTV_					0	0	0		ENST00000486048.2_1_1:151204736-151206704:+|nuORF;PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000107242|O14986-3|PIP5K1B;nc|ENSG00000143398|Q99755-4|PIP5K1A;PIP5K1C|p.A494Gfs*44|1|0.16|ENSG00000186111|chr19:3644116-3644117|-/C|frameshift_variant;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000107242|O14986-2|PIP5K1B;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	964.5363159179688	1	964.534975	963.527698	0.71996	0.00069443	0.048491	4.6771E-05	0.76845	0.0007412	964.5349106672496	46.863	0.26069	46.549	46.385	46.646	-0.31405					7	4	2	0	0	0	0.079387	1	17600	17600		99.755	21.027	1	4078300			5347	2107	2875	2902	5245	5245					0.044475358374370444
DEFIIKTV	8	Unmodified	_DEFIIKTV_					0	0	0		ENST00000486048.2_1_1:151204736-151206704:+|nuORF;PIP5K1A|p.L296Wfs*25|1|0.38|ENSG00000143398|chr1:151234438-151234438|T/-|frameshift_variant;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000107242|O14986-3|PIP5K1B;nc|ENSG00000143398|Q99755-4|PIP5K1A;PIP5K1C|p.A494Gfs*44|1|0.16|ENSG00000186111|chr19:3644116-3644117|-/C|frameshift_variant;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000143398|Q99755-3|PIP5K1A;nc|ENSG00000107242|O14986-2|PIP5K1B;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	ENST00000486048.2_1_1:151204736-151206704:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	482.77117919921875	2	482.771126	963.527698	0.29488	0.00014236	-0.29306	-0.00014148	0.0018243	8.8071E-07	482.77096808140817	46.933	0.46688	46.563	46.381	46.848	-0.37038					15	8	3	0	0	0	0.065113	1	17345	17345		107.19	29.038	1	20269000			5348	2107	2875	2902	5246	5246					0.044475358374370444
DEFILPTGA	9	Unmodified	_DEFILPTGA_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	HCT116MG_D190212_S1	1	962.4845581054688	1	962.482939	961.475663	0.68972	0.00066384	0.12697	0.00012221	0.81669	0.00078605	962.4830616302959	51.889	0.26453	51.889	51.704	51.968	0					6	4	2	0	0	0	0.071351	1	19851	19851		64.236	19.829	1	10868000			5349	5502	2876	2903	5247	5247					-0.006616275763349222
DEFILPTGA	9	Unmodified	_DEFILPTGA_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	HCT116MG_D190212_S3	3	962.4833374023438	1	962.482939	961.475663	0.69542	0.00066933	-0.017105	-1.6463E-05	0.67831	0.00065286	962.4829340493432	52.387	0.41824	52.081	51.882	52.3	-0.3064					16	7	3	0	0	0	0.031005	1	19798	19798		85.357	40.95	1	10128000			5350	5502	2876	2903	5248	5248					-0.006616275763349222
DEFILPTGA	9	Unmodified	_DEFILPTGA_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	HCT116MG_D190212_S4	4	962.483154296875	1	962.482939	961.475663	0.57423	0.00055268	0.50198	0.00048315	1.0762	0.0010358	962.4831532950511	52.402	0.31245	52.062	51.884	52.196	-0.34066					11	5	3	0	0	0	0.050578	1	19541	19541		74.423	38.379	1	5271500			5351	5502	2876	2903	5249	5249					-0.006616275763349222
DEFKELVY	8	Unmodified	_DEFKELVY_					0	0	0		ENST00000478914.1_1_22:42052971-42057696:+|nuORF;nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	ENST00000478914.1_1_22:42052971-42057696:+|nuORF	ENST00000478914.1_1_22:42052971-42057696:+|nuORF	MSMS	HCT116MG_D190212_S3	3	521.758056640625	2	521.758215	1041.50188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.178	1	45.866	45.366	46.366	-0.31237								0	0	0	0.34856	1	17309	17309		51.63	7.8574	1				5352	6067	2877	2904	5250	5250					-0.017213584048704433
DEFKIGEL	8	Unmodified	_DEFKIGEL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant;PRKDC|p.K165Nfs*11|1|0.12|ENSG00000253729|chr8:47954350-47954351|TT/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S2	2	475.7452697753906	2	475.745108	949.475663	0.33238	0.00015813	0.15461	7.3555E-05	0.48699	0.00023168	475.7451419694588	50.512	0.26444	50.34	50.191	50.456	-0.1719					8	4	2	0	0	0	0.023971	1	19379	19379		149.91	35.265	1	17663000			5353	6591	2878	2905	5251	5251					-0.0010962757631887143
DEFKIGELF	9	Unmodified	_DEFKIGELF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant;PRKDC|p.K165Nfs*11|1|0.12|ENSG00000253729|chr8:47954350-47954351|TT/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2796630859375	2	549.279315	1096.54408	0.49962	0.00027443	0.20942	0.00011503	0.70904	0.00038946	549.2793779065604	56.945	0.26046	56.766	56.635	56.895	-0.17904					9	4	3	0	0	0	0.051033	1	22000	22000		74.2	39.798	1	83273000			5354	6591	2879	2906	5252	5252					-0.0003338299648021348
DEFKIGELF	9	Unmodified	_DEFKIGELF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant;PRKDC|p.K165Nfs*11|1|0.12|ENSG00000253729|chr8:47954350-47954351|TT/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S3	3	549.2794799804688	2	549.279315	1096.54408	0.59888	0.00032895	0.16636	9.1379E-05	0.76525	0.00042033	549.2793402512459	57.034	0.15627	56.755	56.677	56.833	-0.27913					6	2	3	0	0	0	0.1535	1	21691	21691		47.594	22.195	1	3185300			5355	6591	2879	2906	5253	5253					-0.0003338299648021348
DEFKVVVV	8	Unmodified	_DEFKVVVV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	467.7657470703125	2	467.765843	933.517133	0.13301	6.2216E-05	0.016683	7.8039E-06	0.14969	7.002E-05	467.76574454886685	47.672	0.2966	47.672	47.492	47.789	0					9	5	2	0	0	0	0.14283	1	18124	18124		85.272	36.926	1	45516000			5356	5641;4383	2880	2907	5254	5254					0.04771553183002197
DEFKVVVV	8	Unmodified	_DEFKVVVV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S2	2	467.7661437988281	2	467.765843	933.517133	0.55393	0.00025911	0.24129	0.00011287	0.79522	0.00037198	467.7658308491507	47.798	0.46259	47.665	47.48	47.943	-0.13281					22	8	4	0	0	0	0.14283	1	18241	18241		85.272	36.926	1	321330000			5357	5641;4383	2880	2907	5255	5255					0.04771553183002197
DEFKVVVV	8	Unmodified	_DEFKVVVV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S2	2	934.525390625	1	934.52441	933.517133	1.0661	0.00099633	0.11653	0.0001089	1.1827	0.0011052	934.5243307101773	47.794	0.3093	47.662	47.532	47.841	-0.13281					15	5	4	0	0	0	0.049954	1	18244	18244		123.45	75.105	1	139480000			5358	5641;4383	2880	2907	5256	5256					0.04771553183002197
DEFKVVVV	8	Unmodified	_DEFKVVVV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	467.7658996582031	2	467.765843	933.517133	0.17474	8.1738E-05	0.2438	0.00011404	0.41854	0.00019578	467.76581861592115	48.065	0.57357	47.749	47.566	48.14	-0.31596					25	10	4	0	0	0	0.19352	1	18054	18054		74.929	34.972	1	93478000			5359	5641;4383	2880	2907	5257	5257					0.04771553183002197
DEFKVVVV	8	Unmodified	_DEFKVVVV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	934.5242309570312	1	934.52441	933.517133	0.66058	0.00061733	0.36088	0.00033725	1.0215	0.00095458	934.524487110672	48.065	0.41727	47.749	47.566	47.984	-0.31596					15	7	3	0	0	0	0.094591	1	18059	18059		96.285	51.878	1	25885000			5360	5641;4383	2880	2907	5258	5258					0.04771553183002197
DEFKVVVV	8	Unmodified	_DEFKVVVV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S4	4	467.7657470703125	2	467.765843	933.517133	0.0033201	1.553E-06	0.437	0.00020441	0.44032	0.00020597	467.76593456025506	48.069	0.36277	47.7	47.519	47.882	-0.36907					16	6	4	0	0	0	0.14283	1	17777	17777		85.272	36.926	1	37862000			5361	5641;4383	2880	2907	5259	5259					0.04771553183002197
DEFKVVVV	8	Unmodified	_DEFKVVVV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S4	4	934.5254516601562	1	934.52441	933.517133	0.68395	0.00063916	0.18636	0.00017415	0.8703	0.00081332	934.524415140679	48.053	0.31089	47.684	47.519	47.83	-0.36907					12	5	3	0	0	0	0.094591	1	17784	17784		96.285	51.878	1	11874000			5362	5641;4383	2880	2907	5260	5260					0.04771553183002197
DEFLGLTH	8	Unmodified	_DEFLGLTH_					0	0	0		ENST00000531406.1_1_14:24661338-24662280:-|nuORF;nc|ENSG00000100926|O15321-2|TM9SF1;ENSG00000100926|ENST00000261789|TM9SF1	ENST00000531406.1_1_14:24661338-24662280:-|nuORF	ENST00000531406.1_1_14:24661338-24662280:-|nuORF	MSMS	HCT116MG_D190212_S1	1	466.22833251953125	2	466.229625	930.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.737	1	44.737	44.237	45.237	0								0	0	0	0.8837	1	16932	16932		13.508	7.7475	1				5363	1741	2881	2908	5261	5261					-0.023307808905883576
DEFLRISTA	9	Unmodified	_DEFLRISTA_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENSG00000087460|ENST00000371085|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	HCT116MG_D190212_S1	1	526.274658203125	2	526.274564	1050.53457	0.26513	0.00013953	0.13319	7.0095E-05	0.39832	0.00020962	526.2743594598942	44.655	0.36617	44.655	44.41	44.777	0					13	6	3	0	0	0	0.060947	1	16905	16905		69.338	21.744	1	29041000			5364	9394	2882	2909	5262	5262					0.011328487179980584
DEFLRISTA	9	Unmodified	_DEFLRISTA_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENSG00000087460|ENST00000371085|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	HCT116MG_D190212_S2	2	526.274169921875	2	526.274564	1050.53457	0.66281	0.00034882	0.096341	5.0702E-05	0.75915	0.00039952	526.2743627301269	44.646	0.26095	44.561	44.482	44.743	-0.084797					7	4	2	0	0	0	0.051033	1	16991	16991		74.2	36.226	1	19047000			5365	9394	2882	2909	5263	5263					0.011328487179980584
DEFLRISTA	9	Unmodified	_DEFLRISTA_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENSG00000087460|ENST00000371085|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MSMS	HCT116MG_D190212_S3	3	526.274658203125	2	526.274564	1050.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.978	1	44.669	44.169	45.169	-0.30927								0	0	0	0.095757	1	16827	16827		57.249	31.85	1				5366	9394	2882	2909	5264	5264					0.011328487179980584
DEFLRISTA	9	Unmodified	_DEFLRISTA_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENSG00000087460|ENST00000371085|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-MSMS	HCT116MG_D190212_S4	4	526.2745971679688	2	526.274564	1050.53457	0.42771	0.0002251	0.14378	7.5667E-05	0.57149	0.00030076	526.2746328739211	44.962	0.19608	44.589	44.494	44.69	-0.37326					8	6	2	0	0	0	0.10482	1	16589	16589		57.249	26.613	1	5155900			5367	9394	2882	2909	5265	5265					0.011328487179980584
DEFLWIGL	8	Unmodified	_DEFLWIGL_					0	0	0			REV__ENST00000343455.7_1_14:95562307-95562397:-|nuORF	REV__ENST00000343455.7_1_14:95562307-95562397:-|nuORF	MSMS	HCT116MG_D190212_S2	2	496.75970458984375	2	496.758018	991.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.378	1	56.196	55.696	56.696	-0.18261								0	0	0	0.8837	1	21753	21753		14.582	1.0738	1		+		5368	14995	2883	2910	5266	5266					0.005392666659417955
DEFLWREQF	9	Unmodified	_DEFLWREQF_					0	0	0		nc|ENSG00000159069|Q969U6-2|FBXW5;ENSG00000159069|ENST00000325285|FBXW5	nc|ENSG00000159069|Q969U6-2|FBXW5	nc|ENSG00000159069|Q969U6-2|FBXW5	MULTI-MSMS	HCT116MG_D190212_S3	3	635.2981567382812	2	635.29857	1268.58259	0.50374	0.00032002	0.42768	0.00027171	0.93142	0.00059173	635.2987327989928	55.035	0.26163	54.743	54.613	54.874	-0.2918					5	4	2	0	0	0	0.28073	1	20886	20886		32.786	20.545	1	4930400			5369	4393	2884	2911	5267	5267					-0.0409607736196449
DEFLWREQF	9	Unmodified	_DEFLWREQF_					0	0	0		nc|ENSG00000159069|Q969U6-2|FBXW5;ENSG00000159069|ENST00000325285|FBXW5	nc|ENSG00000159069|Q969U6-2|FBXW5	nc|ENSG00000159069|Q969U6-2|FBXW5	MULTI-MATCH	HCT116MG_D190212_S2	2		2	635.29857	1268.58259	0.46351	0.00029447	-0.43366	-0.00027551	0.02985	1.8964E-05	635.2981682705306	54.927	0.20512	54.739	54.611	54.816	-0.18797	-0.0020222	-0.00026546	NaN	32.786	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13901000			5370	4393	2884	2911							-0.0409607736196449
DEFNEEDECA	10	Unmodified	_DEFNEEDECA_					0	0	0		ENST00000489621.1_1_3:101431466-101431589:+|nuORF	ENST00000489621.1_1_3:101431466-101431589:+|nuORF	ENST00000489621.1_1_3:101431466-101431589:+|nuORF	MSMS	HCT116MG_D190212_S4	4	600.7056274414062	2	600.703508	1199.39246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.996	1	52.658	52.158	53.158	-0.33847								0	0	0	0.95507	1	19773	19773		3.5965	1.5367	1				5371	8328	2885	2912	5268	5268					-0.19925776877130374
DEFNGVPSY	9	Unmodified	_DEFNGVPSY_					0	0	0		ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	MULTI-MSMS	HCT116MG_D190212_S2	2	1027.4383544921875	1	1027.43672	1026.42944	0.6409	0.00065848	0.11955	0.00012283	0.76045	0.00078132	1027.4369181522732	41.637	0.30863	41.569	41.396	41.705	-0.068199					12	5	3	0	0	0	0.084109	1	15734	15734		61.357	34.474	1	38066000			5372	4232	2886	2913	5269	5269					-0.08271692478410841
DEFNGVPSY	9	Unmodified	_DEFNGVPSY_					0	0	0		ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	MULTI-MSMS	HCT116MG_D190212_S3	3	1027.4381103515625	1	1027.43672	1026.42944	0.48962	0.00050305	0.16926	0.0001739	0.65887	0.00067695	1027.4368815815196	41.849	0.5546	41.546	41.382	41.936	-0.30257					22	11	3	0	0	0	0.084109	1	15552	15552		61.357	34.474	1	38556000			5373	4232	2886	2913	5270	5270					-0.08271692478410841
DEFNGVPSY	9	Unmodified	_DEFNGVPSY_					0	0	0		ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	MULTI-MSMS	HCT116MG_D190212_S4	4	1027.4366455078125	1	1027.43672	1026.42944	0.61892	0.0006359	0.33391	0.00034307	0.95282	0.00097897	1027.43713767586	41.932	0.43011	41.556	41.356	41.786	-0.37637					19	9	3	0	0	0	0.084109	1	15362	15362		61.357	34.474	1	15433000			5374	4232	2886	2913	5271	5271					-0.08271692478410841
DEFNLQKM	8	Unmodified	_DEFNLQKM_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7421264648438	2	512.742042	1023.46953	0.25647	0.0001315	-0.21413	-0.00010979	0.042341	2.171E-05	512.7420655886189	43.265	0.15483	42.96	42.878	43.033	-0.30472					7	4	2	0	0	0	0.1772	1	16149	16149		78.149	49.663	1	8323500			5375	774	2887	2914	5272	5272					-0.041264690794946546
DEFNLQKM	8	Unmodified	_DEFNLQKM_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	512.742042	1023.46953	0.070871	3.6339E-05	0.6198	0.0003178	0.69067	0.00035414	512.7424347849302	42.99	0.1535	42.92	42.844	42.997	-0.069984	-0.01988	0.00044817	NaN	78.149	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23701000			5376	774	2887	2914							-0.041264690794946546
DEFPDLSAH	9	Unmodified	_DEFPDLSAH_					0	0	0		ENSG00000166165|ENST00000348956|CKB;ENST00000555770.1_1_14:103988551-103989144:-|nuORF	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.7698364257812	2	515.727446	1029.44034	0.29634	0.00015283	-0.11827	-6.0994E-05	0.17807	9.1837E-05	515.7274033322315	40.45	1.086	40.38	39.639	40.725	-0.069626					34	20	2	0	0	0	0.12926	1	15229	15229		54.774	33.027	1	9920200			5377	4824	2888	2915	5273	5273					-0.07320290104166816
DEFPDLSAH	9	Unmodified	_DEFPDLSAH_					0	0	0		ENSG00000166165|ENST00000348956|CKB;ENST00000555770.1_1_14:103988551-103989144:-|nuORF	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7276000976562	2	515.727446	1029.44034	0.24662	0.00012719	0.014533	7.4949E-06	0.26116	0.00013469	515.727358305156	40.301	1.0374	39.999	39.699	40.736	-0.30161					33	19	2	0	0	0	0.11731	1	14979	14979		54.774	26.287	1	4646400			5378	4824	2888	2915	5274	5274					-0.07320290104166816
DEFPDLSAH	9	Unmodified	_DEFPDLSAH_					0	0	0		ENSG00000166165|ENST00000348956|CKB;ENST00000555770.1_1_14:103988551-103989144:-|nuORF	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MSMS	HCT116MG_D190212_S4	4	515.727294921875	2	515.727446	1029.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.853	1	40.475	39.975	40.975	-0.37771								0	0	0	0.30227	1	15003	15003		39.957	26.449	1				5379	4824	2888	2915	5275	5275					-0.07320290104166816
DEFPEVYRF	9	Unmodified	_DEFPEVYRF_					0	0	0		ENST00000604689.1_1_6:112397497-112397677:-|nuORF;TUBE1|p.K249Sfs*10|2|0.19|ENSG00000074935|chr6:112076003-112076003|T/-|frameshift_variant;ENSG00000074935|ENST00000368662|TUBE1	ENST00000604689.1_1_6:112397497-112397677:-|nuORF	ENST00000604689.1_1_6:112397497-112397677:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	601.28076171875	2	601.279846	1200.54514	0.69381	0.00041718	0.71103	0.00042753	1.4048	0.00084471	601.2795721820548	52.819	0.41222	52.63	52.449	52.861	-0.18922					15	7	3	0	0	0	0.12205	2	20335	20253;20335		53.833	21.527	1	11297000			5380	1303	2889	2916	5276;5277	5277					-0.04711168627591178
DEFPGSSATY	10	Unmodified	_DEFPGSSATY_					0	0	0		nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A;nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2244873046875	2	537.224736	1072.43492	0.2742	0.00014731	0.22774	0.00012235	0.50194	0.00026965	537.2246788036953	38.009	1.0413	37.916	37.548	38.589	-0.09301					29	19	2	0	0	0	0.65652	1	14266	14266		24.021	11.489	1	21091000			5381	1491	2890	2917	5278	5278					-0.09840013686584825
DEFPGSSATY	10	Unmodified	_DEFPGSSATY_					0	0	0		nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A;nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	MULTI-MSMS	HCT116MG_D190212_S3	3	537.2237548828125	2	537.224736	1072.43492	0.48991	0.00026319	-0.21936	-0.00011785	0.27055	0.00014534	537.2243485369855	38.244	1.0263	37.943	37.534	38.561	-0.30137					63	25	3	0	0	0	0.095673	2	14035	14035;14274		74.929	49.53	1	23936000			5382	1491	2890	2917	5279;5280	5279					-0.09840013686584825
DEFPGSSATY	10	Unmodified	_DEFPGSSATY_					0	0	0		nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A;nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	MULTI-MSMS	HCT116MG_D190212_S3	3	1073.4434814453125	1	1073.4422	1072.43492	0.49708	0.00053359	0.19824	0.00021279	0.69531	0.00074638	1073.442254109569	38.336	0.88839	38.034	37.568	38.456	-0.30137					30	20	2	0	0	0	0.018611	1	14114	14114		123.45	85.299	1	4730500			5383	1491	2890	2917	5281	5281					-0.09840013686584825
DEFPGSSATY	10	Unmodified	_DEFPGSSATY_					0	0	0		nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A;nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	MULTI-MSMS	HCT116MG_D190212_S4	4	537.224609375	2	537.224736	1072.43492	0.23832	0.00012803	-0.0537	-2.8849E-05	0.18462	9.9185E-05	537.22454671197	38.382	0.81891	38	37.568	38.387	-0.38232					32	20	2	0	0	0	0.37629	2	13929	13929;14156		43.858	24.601	1	3957600			5384	1491	2890	2917	5282;5283	5282					-0.09840013686584825
DEFPLTRL	8	Unmodified	_DEFPLTRL_					0	0	0		nc|ENSG00000026559|Q9UIX4-2|KCNG1;ENSG00000026559|ENST00000371571|KCNG1;KCNG1|p.L244Tfs*274|1|0.11|ENSG00000026559|chr20:51009609-51009610|-/CACCTTTCAAAATGTCAGCCGCTGACAGGAATGGTTGTTTTCCTATATGCAATGT|frameshift_variant	nc|ENSG00000026559|Q9UIX4-2|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	MULTI-SECPEP	HCT116MG_D190212_S2	2	495.2873840332031	2	495.766374	989.518196	0.48657	0.00024123	-0.038653	-1.9163E-05	0.44792	0.00022206	495.76648764184915	51.889	0.30879	51.706	51.527	51.835	-0.18369					8	5	2	0	0	0	0.27659	1	19913	19913		30.637	3.7529	1	12027000			5385	958	2891	2918	5284	5284					0.023017675518872238
DEFQQLME	8	Unmodified	_DEFQQLME_					0	0	0			REV__TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	REV__TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	520.3328247070312	2	520.223682	1038.43281	0.25574	0.00013304	1.0355	0.00053871	1.2913	0.00067175	520.2240151816615	54.617	0.20914	54.321	54.19	54.4	-0.29587					5	3	2	0	0	0	0.30323	1	20704	20704		16.149	0.30192	1	3543400	+		5386	12826	2892	2919	5285	5285					-0.08486765696079601
DEFQTGILIY	10	Unmodified	_DEFQTGILIY_					0	0	0		ENSG00000275342|ENST00000615670|PRAG1;ENSG00000173517|ENST00000682557|PEAK1	ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	MULTI-MSMS	HCT116MG_D190212_S2	2	599.8034057617188	2	599.803154	1197.59175	0.76672	0.00045988	-0.13509	-8.1026E-05	0.63164	0.00037886	599.8030086788633	56.929	0.20896	56.75	56.635	56.844	-0.17904					8	3	3	0	0	0	0.24395	1	21991	21991		55.503	31.482	1	16321000			5387	6678	2893	2920	5286	5286					0.0008627120373603248
DEFRMPYL	8	Unmodified	_DEFRMPYL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-SECPEP	HCT116MG_D190212_S1	1	535.3161010742188	2	535.75241	1069.49027	0.48658	0.00026068	0.89022	0.00047694	1.3768	0.00073762	535.7529314465027	55.172	0.25396	55.172	54.994	55.247	0					6	4	2	0	0	0	0.17509	1	21177	21177		58.679	39.422	1	14749000			5388	2836	2894	2921	5287	5287					-0.04169878699826768
DEFRMPYL	8	Unmodified	_DEFRMPYL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	HCT116MG_D190212_S2	2	535.7527465820312	2	535.75241	1069.49027	0.47438	0.00025415	0.094415	5.0583E-05	0.5688	0.00030473	535.7523038408488	55.334	0.30502	55.146	54.968	55.273	-0.18797					15	5	4	0	0	0	0.057078	1	21334	21334		115.69	79.648	1	111670000			5389	2836	2894	2921	5288	5288					-0.04169878699826768
DEFRMPYL	8	Unmodified	_DEFRMPYL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	HCT116MG_D190212_S3	3	535.7525634765625	2	535.75241	1069.49027	0.50626	0.00027123	-0.26152	-0.00014011	0.24474	0.00013112	535.75229267175	55.426	0.26449	55.134	54.979	55.243	-0.2918					11	4	4	0	0	0	0.12693	1	21038	21038		88.904	56.598	1	6371600			5390	2836	2894	2921	5289	5289					-0.04169878699826768
DEFRMPYLSH	10	Unmodified	_DEFRMPYLSH_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	HCT116MG_D190212_S1	1	647.79833984375	2	647.79788	1293.58121	0.79945	0.00051788	-0.060635	-3.9279E-05	0.73881	0.0004786	647.7976940353866	45.861	0.57578	45.861	45.451	46.027	0					14	10	2	0	0	0	0.041584	2	17396	17290;17396		93.448	74.086	1	6038400			5391	2836	2895	2922	5290;5291	5291					-0.05384034722351316
DEFRMPYLSH	10	Unmodified	_DEFRMPYLSH_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	HCT116MG_D190212_S2	2	647.7979736328125	2	647.79788	1293.58121	0.66223	0.00042899	-0.34451	-0.00022317	0.31771	0.00020582	647.7979279707857	45.801	0.51313	45.7	45.453	45.966	-0.1014					16	9	3	0	0	0	0.0040532	2	17452	17387;17452		169.92	144.93	1	24708000			5392	2836	2895	2922	5292;5293	5293					-0.05384034722351316
DEFRMPYLSH	10	Unmodified	_DEFRMPYLSH_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	HCT116MG_D190212_S2	2	432.200927734375	3	432.201012	1293.58121	0.016564	7.159E-06	0.14299	6.1799E-05	0.15955	6.8958E-05	432.201027477838	45.803	0.71893	45.702	45.299	46.017	-0.1014					20	13	2	0	0	0	0.040924	1	17477	17477		82.445	82.445	1	23730000			5393	2836	2895	2922	5294	5294					-0.05384034722351316
DEFRMPYLSH	10	Unmodified	_DEFRMPYLSH_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MATCH	HCT116MG_D190212_S1	1		3	432.201012	1293.58121	0.10865	4.6958E-05	-0.2366	-0.00010226	-0.12795	-5.5299E-05	432.20091026541957	45.741	0.4715	45.741	45.451	45.922	0	0.019817	-0.00039158	NaN	82.445	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4879100			5394	2836	2895	2922							-0.05384034722351316
DEFSDFDRL	9	Unmodified	_DEFSDFDRL_					0	0	0		EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;ENST00000586194.1_1_19:56204029-56204606:+|nuORF	EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant	EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	572.2515258789062	2	572.251286	1142.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.447	1	51.447	50.947	51.947	0								0	0	0	0.22243	1	19656	19656		45.74	14.472	1				5395	1131	2896	2923	5295	5295					-0.07752635903943883
DEFSDFDRL	9	Unmodified	_DEFSDFDRL_					0	0	0		EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;ENST00000586194.1_1_19:56204029-56204606:+|nuORF	EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant	EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	572.2517700195312	2	572.251286	1142.48802	0.45046	0.00025778	0.030673	1.7552E-05	0.48113	0.00027533	572.2511418044888	51.736	0.41087	51.553	51.373	51.784	-0.18369					18	7	4	0	0	0	0.0080847	1	19843	19843		118.07	56.711	1	116780000			5396	1131	2896	2923	5296	5296					-0.07752635903943883
DEFSDFDRL	9	Unmodified	_DEFSDFDRL_					0	0	0		EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1;ENST00000586194.1_1_19:56204029-56204606:+|nuORF	EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant	EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	572.2523193359375	2	572.251286	1142.48802	0.45493	0.00026033	0.25239	0.00014443	0.70732	0.00040476	572.2513592811109	51.824	0.35828	51.515	51.332	51.69	-0.30927					11	6	3	0	0	0	0.0201	1	19580	19580		96.367	35.009	1	22112000			5397	1131	2896	2923	5297	5297					-0.07752635903943883
DEFSVVIH	8	Unmodified	_DEFSVVIH_					0	0	0			REV__ENST00000528392.5_2_8:146219922-146225127:-|nuORF	REV__ENST00000528392.5_2_8:146219922-146225127:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	945.4680786132812	1	945.467623	944.460347	0.50559	0.00047802	2.8922	0.0027345	3.3978	0.0032125	945.4702809037938	47.92	0.36478	47.604	47.462	47.827	-0.31596					9	6	2	0	0	0	0.43493	1	18034	18034		46.921	27.482	1	3314100	+		5398	15554	2897	2924	5298	5298					-0.014104943735219422
DEFSVVSY	8	Unmodified	_DEFSVVSY_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	HCT116MG_D190212_S3	3	945.4205932617188	1	945.420004	944.412728	0.47007	0.00044442	0.08426	7.9661E-05	0.55434	0.00052408	945.419923907897	47.905	0.46887	47.589	47.411	47.879	-0.31592					18	8	3	0	0	0	0.17804	1	17990	17990		77.984	24.409	1	26803000			5399	1811	2898	2925	5299	5299					-0.0617019336436897
DEFSVVSY	8	Unmodified	_DEFSVVSY_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	HCT116MG_D190212_S4	4	945.4207153320312	1	945.420004	944.412728	0.61651	0.00058286	0.35561	0.0003362	0.97211	0.00091905	945.4200590790948	47.866	0.38503	47.497	47.341	47.726	-0.36907					18	7	3	0	0	0	0.25164	1	17697	17697		63.563	7.0216	1	23995000			5400	1811	2898	2925	5300	5300					-0.0617019336436897
DEFSVVSY	8	Unmodified	_DEFSVVSY_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	945.420004	944.412728	0.82462	0.00077961	0.55011	0.00052008	1.3747	0.0012997	945.4211590583203	47.495	0.19466	47.495	47.349	47.543	0	-0.031972	0.00034055	NaN	77.984	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4030000			5401	1811	2898	2925							-0.0617019336436897
DEFTAQSI	8	Unmodified	_DEFTAQSI_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000489375.5_1_19:40739781-40741265:-|nuORF;ENST00000496089.6_1_19:40739781-40742062:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	HCT116MG_D190212_S3	3	910.4168090820312	1	910.415253	909.407977	0.84806	0.00077209	-0.12318	-0.00011214	0.72488	0.00065994	910.4152308360929	41.012	0.36512	40.71	40.527	40.893	-0.30185					12	6	3	0	0	0	0.04808	1	15237	15237		125.62	58.281	1	13400000			5402	1990	2899	2926	5301	5301					-0.050350775071365206
DEFTHLYTL	9	Unmodified	_DEFTHLYTL_					0	0	0		CALR|p.P264Qfs*2|1|0.3|ENSG00000179218|chr19:12940625-12940625|C/-|frameshift_variant;ENSG00000179218|ENST00000316448|CALR	CALR|p.P264Qfs*2|1|0.3|ENSG00000179218|chr19:12940625-12940625|C/-|frameshift_variant	CALR|p.P264Qfs*2|1|0.3|ENSG00000179218|chr19:12940625-12940625|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.7743530273438	2	569.774396	1137.53424	0.4283	0.00024404	-0.23265	-0.00013256	0.19565	0.00011148	569.774148423545	52.768	0.25737	52.581	52.451	52.708	-0.18725					6	4	2	0	0	0	0.0060607	1	20291	20291		128.37	92.238	1	14400000			5403	316	2900	2927	5302	5302					-0.029025710018458994
DEFVQLKVYP	10	Unmodified	_DEFVQLKVYP_					0	0	0			REV__ENST00000381061.8_1_22:46239551-46239644:+|nuORF	REV__ENST00000381061.8_1_22:46239551-46239644:+|nuORF	MSMS	HCT116MG_D190212_S4	4	619.3281860351562	2	619.326796	1236.63904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.555	1	33.171	32.671	33.671	-0.38426								0	0	0	0.90475	1	12219	12219		14.838	1.7958	1		+		5404	15276	2901	2928	5303	5303					0.030185504747350933
DEFVTHNL	8	Unmodified	_DEFVTHNL_					0	0	0		ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENSG00000197894|ENST00000296412|ADH5;ENST00000414059.2_1_1:52625935-52626067:-|nuORF	ENST00000512621.5_1_4:99993722-100006301:-|nuORF	ENST00000512621.5_1_4:99993722-100006301:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	487.73291015625	2	487.732532	973.45051	0.038601	1.8827E-05	0.46603	0.0002273	0.50463	0.00024612	487.73281064974094	38.575	0.2599	38.274	38.092	38.352	-0.30137					7	4	2	0	0	0	0.37603	1	14301	14301		52.268	10.174	1	5896900			5405	6185	2902	2929	5304	5304					-0.03727682378917052
DEFYKTPSL	9	Unmodified	_DEFYKTPSL_					0	0	0		ENST00000483212.1_1_3:49315728-49316342:-|nuORF;ARL8B-USP4|1|fusion;ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000483212.1_1_3:49315728-49316342:-|nuORF	ENST00000483212.1_1_3:49315728-49316342:-|nuORF	MSMS	HCT116MG_D190212_S1	1	550.27099609375	2	550.268947	1098.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.267	1	43.267	42.767	43.767	0								0	0	0	0.71946	1	16341	16341		18.146	3.3081	1				5406	189	2903	2930	5305	5305					-0.021979733761327225
DEGIAYLV	8	Unmodified	_DEGIAYLV_					0	0	0		ENSG00000163918|ENST00000296273|RFC4;ENST00000479307.5_1_3:186508099-186512490:-|nuORF;nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	HCT116MG_D190212_S3	3	879.4463500976562	1	879.445825	878.438549	0.77687	0.00068321	0.086005	7.5637E-05	0.86287	0.00075885	879.4459300767111	54.826	0.26126	54.53	54.4	54.661	-0.29587					7	4	2	0	0	0	0.53394	1	20815	20815		38.151	13.477	1	3427600			5407	4648	2904	2931	5306	5306					-0.005532991221002703
DEGKLHVL	8	Unmodified	_DEGKLHVL_					0	0	0		NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant;ENSG00000136937|ENST00000375147|NCBP1	NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant	NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	455.75335693359375	2	455.753267	909.491981	0.34232	0.00015601	-0.21872	-9.9684E-05	0.1236	5.6329E-05	455.75316016331897	34.686	0.30972	34.528	34.348	34.657	-0.15834					10	5	2	0	0	0	0.049954	1	12916	12916		123.45	45.301	1	52273000			5408	3448	2905	2932	5307	5307					0.03361498380422745
DEGKMKLDY	9	Unmodified	_DEGKMKLDY_					0	0	0		ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	HCT116MG_D190212_S1	1	549.9226684570312	2	549.760432	1097.50631	0.39349	0.00021633	-0.54221	-0.00029808	-0.14871	-8.1757E-05	549.7600062695788	32.021	0.26089	32.021	31.857	32.118	0					8	4	2	0	0	0	0.0037246	2	11806	11806;11812		154.75	86.672	1	11704000			5409	5164	2906	2933	5308;5309	5308					-0.03854217253569914
DEGKMKLDY	9	Unmodified	_DEGKMKLDY_					0	0	0		ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	HCT116MG_D190212_S2	2	549.7662963867188	2	549.760432	1097.50631	0.38599	0.0002122	-0.58198	-0.00031995	-0.19598	-0.00010774	549.7596295807635	32.248	0.25991	32.018	31.89	32.15	-0.23009					11	4	3	0	0	0	0.0068462	1	11920	11920		121.5	62.824	1	72597000			5410	5164	2906	2933	5310	5310					-0.03854217253569914
DEGKMKLDY	9	Unmodified	_DEGKMKLDY_					0	0	0		ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MATCH	HCT116MG_D190212_S3	3		2	549.760432	1097.50631	0.37	0.00020341	0.66708	0.00036673	1.0371	0.00057015	549.7605610386122	32.403	0.20864	32.124	31.994	32.202	-0.27841	0.069676	0.0010802	NaN	154.75	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11681000			5411	5164	2906	2933							-0.03854217253569914
DEGKVIRF	8	Unmodified	_DEGKVIRF_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	HCT116MG_D190212_S1	1	482.2666320800781	2	482.266542	962.51853	0.31447	0.00015166	0.27356	0.00013193	0.58803	0.00028359	482.26656855898733	35.917	0.41679	35.917	35.733	36.15	0					20	7	4	0	0	0	0.027354	1	13378	13378		147.06	39.062	1	108810000			5412	1086	2907	2934	5311	5311					0.03577187271753246
DEGKVIRF	8	Unmodified	_DEGKVIRF_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	HCT116MG_D190212_S2	2	963.52587890625	1	963.525807	962.51853	1.0118	0.00097487	-0.25835	-0.00024893	0.75342	0.00072594	963.5258483921305	36.003	0.30967	35.875	35.658	35.967	-0.12799					8	5	2	0	0	0	0.012121	1	13460	13460		160.52	64.231	1	29946000			5413	1086	2907	2934	5312	5312					0.03577187271753246
DEGKVIRF	8	Unmodified	_DEGKVIRF_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	HCT116MG_D190212_S2	2	482.266845703125	2	482.266542	962.51853	0.56944	0.00027462	0.015637	7.5414E-06	0.58508	0.00028216	482.2664561139703	36.018	0.46489	35.89	35.709	36.174	-0.12799					26	8	4	0	0	0	0.051049	1	13477	13477		122.18	36.907	1	568830000			5414	1086	2907	2934	5313	5313					0.03577187271753246
DEGKVIRF	8	Unmodified	_DEGKVIRF_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	HCT116MG_D190212_S3	3	482.2664794921875	2	482.266542	962.51853	-0.17115	-8.2539E-05	0.33546	0.00016178	0.16431	7.9243E-05	482.26659567376487	36.212	0.62376	35.912	35.574	36.198	-0.30042					28	11	4	0	0	0	0.012121	1	13373	13373		160.52	52.519	1	97953000			5415	1086	2907	2934	5314	5314					0.03577187271753246
DEGLIIHVF	9	Unmodified	_DEGLIIHVF_					0	0	0		ENSG00000067606|ENST00000378567|PRKCZ;ENST00000479566.5_1_1:1986898-2002796:+|nuORF;PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant	ENSG00000067606|ENST00000378567|PRKCZ	ENSG00000067606|ENST00000378567|PRKCZ	MULTI-MSMS	HCT116MG_D190212_S1	1	521.7821655273438	2	521.782025	1041.5495	0.40254	0.00021004	0.38646	0.00020165	0.789	0.00041169	521.7820423471138	56.247	0.15488	56.247	56.171	56.326	0					6	2	3	0	0	0	0.22969	1	21645	21645		38.151	25.62	1	20197000			5416	1189	2908	2935	5315	5315					0.030383405859993218
DEGLIIHVF	9	Unmodified	_DEGLIIHVF_					0	0	0		ENSG00000067606|ENST00000378567|PRKCZ;ENST00000479566.5_1_1:1986898-2002796:+|nuORF;PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant	ENSG00000067606|ENST00000378567|PRKCZ	ENSG00000067606|ENST00000378567|PRKCZ	MULTI-MSMS	HCT116MG_D190212_S2	2	521.7826538085938	2	521.782025	1041.5495	0.4475	0.0002335	-0.16129	-8.4157E-05	0.28621	0.00014934	521.7818858993619	56.364	0.25953	56.182	56.052	56.312	-0.18261					10	4	3	0	0	0	0.00010515	1	21757	21757		198.52	127.8	1	231970000			5417	1189	2908	2935	5316	5316					0.030383405859993218
DEGLIIHVF	9	Unmodified	_DEGLIIHVF_					0	0	0		ENSG00000067606|ENST00000378567|PRKCZ;ENST00000479566.5_1_1:1986898-2002796:+|nuORF;PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant	ENSG00000067606|ENST00000378567|PRKCZ	ENSG00000067606|ENST00000378567|PRKCZ	MULTI-MSMS	HCT116MG_D190212_S2	2	1042.55810546875	1	1042.55677	1041.5495	0.86422	0.000901	0.1999	0.00020841	1.0641	0.0011094	1042.5570615682805	56.364	0.20726	56.182	56.052	56.259	-0.18261					5	3	2	0	0	0	0.035914	1	21775	21775		81.613	41.656	1	24453000			5418	1189	2908	2935	5317	5317					0.030383405859993218
DEGLIIHVF	9	Unmodified	_DEGLIIHVF_					0	0	0		ENSG00000067606|ENST00000378567|PRKCZ;ENST00000479566.5_1_1:1986898-2002796:+|nuORF;PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant	ENSG00000067606|ENST00000378567|PRKCZ	ENSG00000067606|ENST00000378567|PRKCZ	MULTI-MSMS	HCT116MG_D190212_S3	3	521.7821044921875	2	521.782025	1041.5495	0.43512	0.00022704	-0.0033437	-1.7447E-06	0.43178	0.00022529	521.7820223754813	56.46	0.15739	56.176	56.097	56.255	-0.28367					4	2	2	0	0	0	0.22969	1	21457	21457		38.151	25.62	1	9727600			5419	1189	2908	2935	5318	5318					0.030383405859993218
DEGLIIHVF	9	Unmodified	_DEGLIIHVF_					0	0	0		ENSG00000067606|ENST00000378567|PRKCZ;ENST00000479566.5_1_1:1986898-2002796:+|nuORF;PRKCZ|p.S262Afs*10|1|0.39|ENSG00000067606|chr1:2150886-2150886|A/-|frameshift_variant	ENSG00000067606|ENST00000378567|PRKCZ	ENSG00000067606|ENST00000378567|PRKCZ	MULTI-MSMS	HCT116MG_D190212_S4	4	521.7821655273438	2	521.782025	1041.5495	0.49573	0.00025866	-0.11722	-6.1162E-05	0.37851	0.0001975	521.7820285028331	56.48	0.1573	56.174	56.095	56.252	-0.30626					6	2	3	0	0	0	0.30509	1	21198	21198		30.225	22.315	1	3372100			5420	1189	2908	2935	5319	5319					0.030383405859993218
DEGRSFSH	8	Unmodified	_DEGRSFSH_					0	0	0		PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;ENST00000549774.5_1_12:42720030-42749025:+|nuORF;ENST00000550535.5_1_12:42720030-42753098:+|nuORF	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	PPHLN1|p.D323Ifs*4|1|0.17|ENSG00000134283|chr12:42441367-42441367|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	467.7040100097656	2	467.704306	933.394058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.273	1	16.923	16.423	17.423	-0.34933								0	0	0	0.67283	1	5868	5868		32.786	4.2988	1				5421	3275	2909	2936	5320	5320					-0.07530310215554437
DEGVHEPSGP	10	Unmodified	_DEGVHEPSGP_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	MULTI-MSMS	HCT116MG_D190212_S4	4	512.223388671875	2	512.222528	1022.4305	0.24323	0.00012459	0.8805	0.00045101	1.1237	0.0005756	512.2230458837712	21.584	0.3113	21.365	21.166	21.478	-0.21832					8	5	3	0	0	0	0.56527	1	7480	7480		30.637	10.222	1	1779700	+		5422	12864	2910	2937	5321	5321					-0.07981478109513773
DEGVHEPSGP	10	Unmodified	_DEGVHEPSGP_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	MULTI-SECPEP	HCT116MG_D190212_S4	4	511.59051513671875	2	512.222528	1022.4305	0.24323	0.00012459	0.8805	0.00045101	1.1237	0.0005756	512.2230458837712	21.584	0.3113	21.365	21.166	21.478	-0.21832					8	5	3	0	0	0	0.25856	1	7461	7461		18.146	11.423	1	1779700	+		5423	12864	2910	2937	5322	5322					-0.07981478109513773
DEGVYVNTY	9	Unmodified	_DEGVYVNTY_					0	0	0		nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-2|TNIK;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000154310|Q9UKE5-3|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000154310|Q9UKE5-7|TNIK;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000141503|Q8N4C8-2|MINK1	nc|ENSG00000141503|Q8N4C8-2|MINK1	MULTI-MSMS	HCT116MG_D190212_S1	1	1059.4647216796875	1	1059.46293	1058.45566	0.62701	0.00066429	0.18062	0.00019136	0.80763	0.00085565	1059.4634299379973	36.912	0.20714	36.912	36.783	36.99	0					5	3	2	0	0	0	0.1037	1	13800	13800		57.471	23.369	1	11221000			5424	3723	2911	2938	5323	5323					-0.07123423306939003
DEGVYVNTY	9	Unmodified	_DEGVYVNTY_					0	0	0		nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-2|TNIK;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000154310|Q9UKE5-3|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000154310|Q9UKE5-7|TNIK;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000141503|Q8N4C8-2|MINK1	nc|ENSG00000141503|Q8N4C8-2|MINK1	MULTI-MSMS	HCT116MG_D190212_S2	2	1059.4638671875	1	1059.46293	1058.45566	0.54906	0.00058171	0.046078	4.8818E-05	0.59514	0.00063053	1059.4628270281146	37.001	0.36069	36.886	36.705	37.066	-0.11478					13	6	3	0	0	0	0.007119	1	13862	13862		120.45	65.677	1	39065000			5425	3723	2911	2938	5324	5324					-0.07123423306939003
DEGVYVNTY	9	Unmodified	_DEGVYVNTY_					0	0	0		nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-2|TNIK;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000154310|Q9UKE5-3|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000154310|Q9UKE5-7|TNIK;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000141503|Q8N4C8-2|MINK1	nc|ENSG00000141503|Q8N4C8-2|MINK1	MULTI-MSMS	HCT116MG_D190212_S3	3	1059.4638671875	1	1059.46293	1058.45566	0.67352	0.00071357	0.08158	8.6431E-05	0.7551	0.0008	1059.4628048779005	37.2	0.46833	36.899	36.717	37.185	-0.30137					20	8	3	0	0	0	0.0051486	1	13758	13758		136.33	72.097	1	37977000			5426	3723	2911	2938	5325	5325					-0.07123423306939003
DEGVYVNTY	9	Unmodified	_DEGVYVNTY_					0	0	0		nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-2|TNIK;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000154310|Q9UKE5-3|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000154310|Q9UKE5-7|TNIK;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000141503|Q8N4C8-2|MINK1	nc|ENSG00000141503|Q8N4C8-2|MINK1	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2349853515625	2	530.235104	1058.45566	0.50267	0.00026653	-0.51076	-0.00027082	-0.0080915	-4.2904E-06	530.2346597941848	37.211	0.31214	36.91	36.769	37.081	-0.30137					10	5	2	0	0	0	0.24895	1	13783	13783		36.127	16.87	1	4825400			5427	3723	2911	2938	5326	5326					-0.07123423306939003
DEGVYVNTY	9	Unmodified	_DEGVYVNTY_					0	0	0		nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;TNIK|p.F1336Lfs*15|1|0.15|ENSG00000154310|chr3:171063956-171063956|A/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-2|TNIK;MAP4K4|p.G1177Efs*5|1|0.19|ENSG00000071054|chr2:101888826-101888826|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000154310|Q9UKE5-3|TNIK;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000154310|Q9UKE5-7|TNIK;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000141503|Q8N4C8-2|MINK1	nc|ENSG00000141503|Q8N4C8-2|MINK1	MULTI-MSMS	HCT116MG_D190212_S4	4	1059.4635009765625	1	1059.46293	1058.45566	0.49968	0.0005294	0.28755	0.00030465	0.78723	0.00083405	1059.462933118432	37.284	0.39474	36.9	36.685	37.079	-0.3839					13	7	2	0	0	0	0.1037	1	13665	13665		57.471	23.369	1	9540000			5428	3723	2911	2938	5327	5327					-0.07123423306939003
DEHAGVISV	9	Unmodified	_DEHAGVISV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	463.7322998046875	2	463.732532	925.45051	-0.014471	-6.7106E-06	0.043164	2.0017E-05	0.028693	1.3306E-05	463.7324013265297	36.702	0.36469	36.702	36.47	36.835	0					13	6	3	0	0	0	0.016134	1	13672	13672		100.37	22.222	1	36458000			5429	3269	2912	2939	5328	5328					-0.015196823788869551
DEHAGVISV	9	Unmodified	_DEHAGVISV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	463.73272705078125	2	463.732532	925.45051	0.23268	0.0001079	0.28856	0.00013382	0.52124	0.00024172	463.7325491685903	36.743	0.41265	36.628	36.447	36.859	-0.11478					17	7	3	0	0	0	0.0063744	1	13752	13752		125.62	25.253	1	122020000			5430	3269	2912	2939	5329	5329					-0.015196823788869551
DEHAGVISV	9	Unmodified	_DEHAGVISV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	926.4600830078125	1	926.457787	925.45051	1.0525	0.00097509	0.69429	0.00064323	1.7468	0.0016183	926.4587024999587	36.743	0.2579	36.628	36.499	36.757	-0.11478					7	4	2	0	0	0	0.012168	1	13768	13768		108	46.64	1	30457000			5431	3269	2912	2939	5330	5330					-0.015196823788869551
DEHAGVISV	9	Unmodified	_DEHAGVISV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	463.732177734375	2	463.732532	925.45051	0.32164	0.00014915	-0.49095	-0.00022767	-0.16932	-7.8518E-05	463.73231843639917	36.94	0.36409	36.639	36.457	36.821	-0.30113					17	6	4	0	0	0	0.057285	1	13647	13647		71.134	27.275	1	20133000			5432	3269	2912	2939	5331	5331					-0.015196823788869551
DEHATQLPF	9	Unmodified	_DEHATQLPF_					0	0	0		ENST00000467100.1_1_9:133456332-133456455:+|nuORF	ENST00000467100.1_1_9:133456332-133456455:+|nuORF	ENST00000467100.1_1_9:133456332-133456455:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2509155273438	2	529.251089	1056.48762	0.40779	0.00021582	-0.23106	-0.00012229	0.17673	9.3535E-05	529.2508799194694	46.35	0.36091	46.239	46.008	46.369	-0.11121					11	6	2	0	0	0	0.069315	1	17645	17645		65.235	25.278	1	24685000			5433	8111	2913	2940	5332	5332					-0.03836010833151704
DEHATQLPF	9	Unmodified	_DEHATQLPF_					0	0	0		ENST00000467100.1_1_9:133456332-133456455:+|nuORF	ENST00000467100.1_1_9:133456332-133456455:+|nuORF	ENST00000467100.1_1_9:133456332-133456455:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2509155273438	2	529.251089	1056.48762	0.63485	0.00033599	-0.59813	-0.00031656	0.03672	1.9434E-05	529.2506736478713	46.569	0.3646	46.257	46.075	46.439	-0.31237					13	6	3	0	0	0	0.12994	1	17484	17484		52.268	25.927	1	9561400			5434	8111	2913	2940	5333	5333					-0.03836010833151704
DEHATQLPF	9	Unmodified	_DEHATQLPF_					0	0	0		ENST00000467100.1_1_9:133456332-133456455:+|nuORF	ENST00000467100.1_1_9:133456332-133456455:+|nuORF	ENST00000467100.1_1_9:133456332-133456455:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	529.251220703125	2	529.251089	1056.48762	0.56945	0.00030138	-0.25369	-0.00013427	0.31576	0.00016712	529.2510111343005	46.61	0.24044	46.238	46.14	46.38	-0.37134					6	4	2	0	0	0	0.1754	1	17245	17245		43.858	22.987	1	2636800			5435	8111	2913	2940	5334	5334					-0.03836010833151704
DEHATQLPF	9	Unmodified	_DEHATQLPF_					0	0	0		ENST00000467100.1_1_9:133456332-133456455:+|nuORF	ENST00000467100.1_1_9:133456332-133456455:+|nuORF	ENST00000467100.1_1_9:133456332-133456455:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	529.251089	1056.48762	0.44299	0.00023446	-0.33429	-0.00017692	0.1087	5.7532E-05	529.7520528080357	46.292	0.25856	46.292	46.13	46.389	0	0.035069	7.1155E-05	NaN	65.235	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5112700			5436	8111	2913	2940							-0.03836010833151704
DEHCVMPPP	9	Unmodified	_DEHCVMPPP_					0	0	0		PYDC2|p.A88S|1|0.3|ENSG00000253548|chr3:191461424-191461424|G/T|missense_variant;ENSG00000253548|ENST00000518817|PYDC2	PYDC2|p.A88S|1|0.3|ENSG00000253548|chr3:191461424-191461424|G/T|missense_variant	PYDC2|p.A88S|1|0.3|ENSG00000253548|chr3:191461424-191461424|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	512.7163696289062	2	512.71497	1023.41539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.82	1	14.501	14.001	15.001	-0.31952								0	0	0	0.76877	1	4880	4880		5.2307	0.90143	1				5437	6587	2914	2941	5335	5335					-0.095383845027186
DEHDFLGQF	9	Unmodified	_DEHDFLGQF_					0	0	0		nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	MULTI-MSMS	HCT116MG_D190212_S2	2	554.2399291992188	2	554.240721	1106.46689	0.18488	0.00010247	-0.060836	-3.3718E-05	0.12405	6.8751E-05	554.2406556936543	53.371	0.30778	53.181	53.018	53.326	-0.18922					14	5	3	0	0	0	0.012168	1	20515	20515		108	44.037	1	51024000			5438	3688	2915	2942	5336	5336					-0.08208601212777467
DEHDFLGQF	9	Unmodified	_DEHDFLGQF_					0	0	0		nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	MULTI-MSMS	HCT116MG_D190212_S3	3	554.2408447265625	2	554.240721	1106.46689	0.52986	0.00029367	-0.23441	-0.00012992	0.29545	0.00016375	554.2406491165405	53.504	0.47036	53.201	53.035	53.505	-0.30305					12	8	2	0	0	0	0.010304	1	20260	20260		112.59	48.633	1	8547300			5439	3688	2915	2942	5337	5337					-0.08208601212777467
DEHDFLGQF	9	Unmodified	_DEHDFLGQF_					0	0	0		nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	554.240721	1106.46689	0.58243	0.00032281	-0.42516	-0.00023564	0.15727	8.7165E-05	554.2403565741697	53.076	0.20504	53.076	52.948	53.153	0	-0.084748	-0.00020781	NaN	112.59	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9002300			5440	3688	2915	2942							-0.08208601212777467
DEHDFLGQF	9	Unmodified	_DEHDFLGQF_					0	0	0		nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	MULTI-MATCH	HCT116MG_D190212_S4	4		2	554.240721	1106.46689	0.47618	0.00026392	-0.35707	-0.0001979	0.1191	6.6012E-05	554.2403509548578	53.52	0.15636	53.185	53.087	53.244	-0.33473	0.024466	-0.00013233	NaN	112.59	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2191500			5441	3688	2915	2942							-0.08208601212777467
DEHEGPAL	8	Unmodified	_DEHEGPAL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	434.1954345703125	2	434.195782	866.377011	-0.021053	-9.1412E-06	0.17706	7.6877E-05	0.156	6.7736E-05	434.1957357503306	29.02	0.25682	28.703	28.555	28.812	-0.31613					7	4	2	0	0	0	0.13911	1	10639	10639		86.121	39.2	1	13652000			5442	2925	2916	2943	5338	5338					-0.061522308213625365
DEHEGPAL	8	Unmodified	_DEHEGPAL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S3	3	434.19573974609375	2	434.195782	866.377011	0.27057	0.00011748	-0.21469	-9.3218E-05	0.055879	2.4262E-05	434.19558247861755	29.018	0.31227	28.796	28.629	28.942	-0.22196					9	5	2	0	0	0	0.15838	1	10537	10537		81.864	37.457	1	4420000			5443	2925	2916	2943	5339	5339					-0.061522308213625365
DEHEGPALY	9	Unmodified	_DEHEGPALY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S1	1	515.7273559570312	2	515.727446	1029.44034	0.38379	0.00019793	0.090951	4.6906E-05	0.47474	0.00024484	515.7273868523664	33.841	0.46949	33.841	33.659	34.128	0					18	8	3	0	0	0	0.035914	1	12526	12526		81.613	47.211	1	48779000			5444	2925	2917	2944	5340	5340					-0.07320290104121341
DEHEGPALY	9	Unmodified	_DEHEGPALY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7274780273438	2	515.727446	1029.44034	0.16757	8.6421E-05	0.097578	5.0324E-05	0.26515	0.00013674	515.7274151443897	34.066	0.46694	33.89	33.657	34.124	-0.17512					25	8	4	0	0	0	0.050578	1	12646	12646		74.423	32.583	1	247600000			5445	2925	2917	2944	5341	5341					-0.07320290104121341
DEHEGPALY	9	Unmodified	_DEHEGPALY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	1030.4505615234375	1	1030.44762	1029.44034	0.31602	0.00032565	0.12928	0.00013321	0.4453	0.00045886	1030.4475565636865	34.066	0.36311	33.89	33.709	34.072	-0.17512					10	6	2	0	0	0	0.0034599	1	12670	12670		162.95	112.1	1	38462000			5446	2925	2917	2944	5342	5342					-0.07320290104121341
DEHEGPALY	9	Unmodified	_DEHEGPALY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7274169921875	2	515.727446	1029.44034	0.24776	0.00012778	0.17342	8.9435E-05	0.42117	0.00021721	515.7274315653862	34.245	0.52038	33.951	33.715	34.236	-0.29419					26	9	4	0	0	0	0.050578	1	12586	12586		74.423	28.723	1	53526000			5447	2925	2917	2944	5343	5343					-0.07320290104121341
DEHEGPALY	9	Unmodified	_DEHEGPALY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S3	3	1030.4488525390625	1	1030.44762	1029.44034	0.59575	0.00061389	1.0562	0.0010883	1.6519	0.0017022	1030.4478624624944	34.244	0.2601	33.949	33.819	34.079	-0.29419					6	4	2	0	0	0	0.0063744	1	12630	12630		125.62	81.766	1	3096900			5448	2925	2917	2944	5344	5344					-0.07320290104121341
DEHEGPALY	9	Unmodified	_DEHEGPALY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7274169921875	2	515.727446	1029.44034	0.23388	0.00012062	-0.092404	-4.7655E-05	0.14147	7.2961E-05	515.727345890176	34.355	0.31144	33.97	33.776	34.087	-0.38558					12	5	3	0	0	0	0.16144	2	12538	12531;12538		46.021	9.8939	1	9109100			5449	2925	2917	2944	5345;5346	5346					-0.07320290104121341
DEHEGPALYY	10	Unmodified	_DEHEGPALYY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	597.2603759765625	2	597.259111	1192.50367	0.831	0.00049632	1.3584	0.00081132	2.1894	0.0013076	597.2597386858093	40.501	0.36172	40.431	40.209	40.571	-0.069626					9	6	2	0	0	0	0.51145	1	15330	15330		34.402	13.987	1	12296000			5450	2925	2918	2945	5347	5347					-0.08488349386880145
DEHELLEHL	9	Unmodified	_DEHELLEHL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MSMS	HCT116MG_D190212_S2	2	567.7748413085938	2	567.774928	1133.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.075	1	44.983	44.483	45.483	-0.092472								0	0	0	0.00013797	1	17132	17132		131.27	89.173	1				5451	2507	2919	2946	5348	5348					-0.026123566329488312
DEHELNQLL	9	Unmodified	_DEHELNQLL_					0	0	0		nc|ENSG00000138031|O60266-2|ADCY3;ENSG00000138031|ENST00000679454|ADCY3	nc|ENSG00000138031|O60266-2|ADCY3	nc|ENSG00000138031|O60266-2|ADCY3	MULTI-MSMS	HCT116MG_D190212_S2	2	555.7753295898438	2	555.774928	1109.5353	0.55495	0.00030843	0.30857	0.00017149	0.86352	0.00047992	555.7751511758363	47.484	0.36132	47.362	47.182	47.543	-0.12175					12	6	2	0	0	0	0.031089	1	18130	18130		85.272	38.351	1	11357000			5452	3524	2920	2947	5349	5349					-0.015083566329394671
DEHEMDDYEY	10	Unmodified	_DEHEMDDYEY_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	HCT116MG_D190212_S3	3	673.3197021484375	2	673.22989	1344.44523	0.97763	0.00065817	-0.37107	-0.00024982	0.60656	0.00040835	673.229724554441	26.101	0.46935	25.973	25.755	26.224	-0.12795					17	8	3	0	0	0	0.31168	1	9265	9265		0.45834	0	1	9258900	+		5453	13163	2921	2948	5350	5350					-0.2132181881431734
DEHEMDDYEY	10	Unmodified	_DEHEMDDYEY_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	HCT116MG_D190212_S4	4	673.2298583984375	2	673.22989	1344.44523	0.65982	0.00044421	-0.32936	-0.00022174	0.33046	0.00022247	673.2295563663586	26.056	0.57255	25.766	25.516	26.088	-0.29022					22	10	3	0	0	0	0.88673	1	9248	9248		1.8442	1.3859	1	9570200	+		5454	13163	2921	2948	5351	5351					-0.2132181881431734
DEHEVNNTF	9	Unmodified	_DEHEVNNTF_					0	0	0		RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant;nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	552.7335815429688	2	552.73326	1103.45197	0.66616	0.00036821	0.45493	0.00025146	1.1211	0.00061967	552.733285816002	29.295	0.31284	29.295	29.112	29.425	0					8	5	2	0	0	0	0.023938	1	10719	10719		92.491	54.316	1	5473000			5455	3181	2922	2949	5352	5352					-0.09562093080808154
DEHEVNNTF	9	Unmodified	_DEHEVNNTF_					0	0	0		RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant;nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	552.7329711914062	2	552.73326	1103.45197	0.53	0.00029295	-0.26606	-0.00014706	0.26393	0.00014589	552.733252638201	29.74	0.41348	29.44	29.185	29.599	-0.30095					13	7	3	0	0	0	0.055677	1	10907	10907		71.922	39.805	1	35089000			5456	3181	2922	2949	5353	5353					-0.09562093080808154
DEHEVNNTF	9	Unmodified	_DEHEVNNTF_					0	0	0		RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant;nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7334594726562	2	552.73326	1103.45197	0.57203	0.00031618	-1.272	-0.00070305	-0.69992	-0.00038687	552.7332085341907	29.837	0.47758	29.601	29.344	29.822	-0.23655					18	8	3	0	0	0	0.023938	1	10843	10843		92.491	54.316	1	9422400			5457	3181	2922	2949	5354	5354					-0.09562093080808154
DEHEVNNTF	9	Unmodified	_DEHEVNNTF_					0	0	0		RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant;nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	552.7337036132812	2	552.73326	1103.45197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.945	1	29.588	29.088	30.088	-0.3571								0	0	0	0.38321	1	10835	10835		34.402	18.555	1				5458	3181	2922	2949	5355	5355					-0.09562093080808154
DEHGFDNCL	9	Unmodified	_DEHGFDNCL_					0	0	0		TXNL1|p.C161Lfs*20|1|0.21|ENSG00000091164|chr18:56618014-56618014|C/-|frameshift_variant;ENST00000587807.5_1_18:54270260-54293401:-|nuORF;ENSG00000091164|ENST00000217515|TXNL1	TXNL1|p.C161Lfs*20|1|0.21|ENSG00000091164|chr18:56618014-56618014|C/-|frameshift_variant	TXNL1|p.C161Lfs*20|1|0.21|ENSG00000091164|chr18:56618014-56618014|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	524.5785522460938	2	525.203281	1048.39201	0.35992	0.00018903	0.22942	0.00012049	0.58934	0.00030953	525.2033449929837	42.19	0.20693	42.122	42.016	42.223	-0.068199					5	3	2	0	0	0	0.26128	1	15925	15925		6.2058	6.2058	1	6860100			5459	1557	2923	2950	5356	5356					-0.13025107015687354
DEHGIDPTGTY	11	Unmodified	_DEHGIDPTGTY_					0	0	0		TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B	TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant	TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	602.7595825195312	2	602.759475	1203.5044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.192	1	31.962	31.462	32.462	-0.23009								0	0	0	0.31808	1	11903	11903		57.722	36.185	1				5460	1955	2924	2951	5357	5357					-0.08921554737844417
DEHGIDPTGTY	11	Unmodified	_DEHGIDPTGTY_					0	0	0		TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant;TUBB|p.G142Afs*23|1|0.35|ENSG00000196230|chr6:30723483-30723483|G/-|frameshift_variant;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B	TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant	TUBB4A|p.G141Vfs*24|2|0.35|ENSG00000104833|chr19:6496077-6496077|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	603.26953125	2	602.759475	1203.5044	0.7967	0.00048022	0.18162	0.00010947	0.97832	0.00058969	602.7595533912546	32.057	0.25914	31.827	31.683	31.942	-0.23009					6	4	2	0	0	0	0.10932	1	11834	11834		82.529	65.416	1	8806000			5461	1955	2924	2951	5358	5358					-0.08921554737844417
DEHGLHTKY	9	Unmodified	_DEHGLHTKY_					0	0	0		nc|ENSG00000056972|O43734-4|TRAF3IP2;nc|ENSG00000056972|O43734-3|TRAF3IP2;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	nc|ENSG00000056972|O43734-4|TRAF3IP2	nc|ENSG00000056972|O43734-4|TRAF3IP2	MULTI-MSMS	HCT116MG_D190212_S2	2	550.2625732421875	2	550.261988	1098.50942	0.31902	0.00017554	0.38189	0.00021014	0.70091	0.00038568	550.2623942922237	20.271	0.20985	19.891	19.813	20.023	-0.37949					5	3	2	0	0	0	0.082877	1	7111	7111		61.602	41.148	1	6353500			5462	1090	2925	2952	5359	5359					-0.035892060845753804
DEHHFVAV	8	Unmodified	_DEHHFVAV_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	HCT116MG_D190212_S2	2	477.2273254394531	2	477.227417	952.44028	0.1656	7.9029E-05	0.36087	0.00017222	0.52647	0.00025125	477.22762850890587	32.302	0.57252	32.072	31.89	32.463	-0.23009					25	10	4	0	0	0	0.060038	1	11933	11933		112.56	76.092	1	203350000			5463	4056	2926	2953	5360	5360					-0.03784245313477186
DEHHFVAV	8	Unmodified	_DEHHFVAV_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	HCT116MG_D190212_S2	2	953.4473266601562	1	953.447557	952.44028	0.58156	0.00055449	-0.36748	-0.00035037	0.21408	0.00020412	953.4472784171041	32.335	0.36402	32.105	31.89	32.254	-0.23009					10	6	2	0	0	0	0.10511	1	11949	11949		93.883	57.839	1	20254000			5464	4056	2926	2953	5361	5361					-0.03784245313477186
DEHHFVAV	8	Unmodified	_DEHHFVAV_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	HCT116MG_D190212_S3	3	477.2275390625	2	477.227417	952.44028	0.18689	8.9188E-05	0.25376	0.0001211	0.44065	0.00021029	477.22744455886834	32.403	0.62525	32.124	31.942	32.567	-0.27841					25	11	4	0	0	0	0.060038	1	11863	11863		112.56	76.092	1	71056000			5465	4056	2926	2953	5362	5362					-0.03784245313477186
DEHHFVAV	8	Unmodified	_DEHHFVAV_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MATCH	HCT116MG_D190212_S3	3		1	953.447557	952.44028	0.74841	0.00071357	-0.19659	-0.00018744	0.55182	0.00052613	953.4476202431902	32.403	0.20864	32.124	31.994	32.202	-0.27841	0.0094648	0.00012295	NaN	93.883	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2820700			5466	4056	2926	2953							-0.03784245313477186
DEHHFVAVA	9	Unmodified	_DEHHFVAVA_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	HCT116MG_D190212_S1	1	512.745849609375	2	512.745973	1023.47739	0.37757	0.0001936	0.056269	2.8852E-05	0.43383	0.00022245	512.7457987015132	30.27	0.29883	30.27	30.1	30.399	0					8	5	2	0	0	0	0.41514	1	11115	11115		21.747	8.2388	1	4346700			5467	4056	2927	2954	5363	5363					-0.03340573767718524
DEHHFVAVA	9	Unmodified	_DEHHFVAVA_					0	0	0		ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	ENSG00000149313|ENST00000278618|AASDHPPT	MSMS	HCT116MG_D190212_S2	2	512.7457275390625	2	512.745973	1023.47739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.762	1	30.495	29.995	30.995	-0.26704								0	0	0	0.46109	1	11322	11322		30.637	10.183	1				5468	4056	2927	2954	5364	5364					-0.03340573767718524
DEHHSVNF	8	Unmodified	_DEHHSVNF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S1	1	492.7120666503906	2	492.712131	983.409708	0.31173	0.00015359	-0.19157	-9.4387E-05	0.12016	5.9205E-05	492.71194932752593	26.996	0.46844	26.996	26.865	27.334	0					14	8	3	0	0	0	0.064348	1	9779	9779		108	61.976	1	58537000			5469	1393	2928	2955	5365	5365					-0.08266023698524805
DEHHSVNF	8	Unmodified	_DEHHSVNF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S2	2	492.7121887207031	2	492.712131	983.409708	0.54112	0.00026662	0.053886	2.655E-05	0.59501	0.00029317	492.7120881219883	27.455	0.46486	27.113	26.933	27.398	-0.34201					20	8	4	0	0	0	0.064348	1	9975	9975		108	50.526	1	158180000			5470	1393	2928	2955	5366	5366					-0.08266023698524805
DEHHSVNF	8	Unmodified	_DEHHSVNF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S2	2	984.4180908203125	1	984.416985	983.409708	1.019	0.0010031	-0.22614	-0.00022261	0.79286	0.0007805	984.4164412070971	27.455	0.25794	27.113	26.985	27.243	-0.34201					6	4	2	0	0	0	0.045718	1	10013	10013		128.37	90.214	1	7359000			5471	1393	2928	2955	5367	5367					-0.08266023698524805
DEHHSVNF	8	Unmodified	_DEHHSVNF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	HCT116MG_D190212_S3	3	492.71221923828125	2	492.712131	983.409708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.228	1	27.059	26.559	27.559	-0.16933								0	0	0	0.042031	1	9803	9803		96.285	44.016	1				5472	1393	2928	2955	5368	5368					-0.08266023698524805
DEHIQVQL	8	Unmodified	_DEHIQVQL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S2	2	491.25372314453125	2	491.253631	980.49271	0.39998	0.00019649	0.76107	0.00037388	1.1611	0.00057037	491.25398697479085	41.747	0.36109	41.679	41.447	41.808	-0.068199					10	6	2	0	0	0	0.34844	1	15811	15811		54.774	12.679	1	15790000			5473	3750	2929	2956	5369	5369					0.0016829302946916869
DEHIYPYMY	9	Unmodified	_DEHIYPYMY_					0	0	0		MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant;nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant	MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	615.7606811523438	2	615.760432	1229.50631	0.87979	0.00054174	-0.51641	-0.00031799	0.36338	0.00022375	615.7600805795502	46.787	0.30876	46.676	46.471	46.78	-0.11122					15	5	4	0	0	0	0.050578	1	17827	17827		74.423	56.276	1	43889000			5474	3256	2930	2957	5370	5370					-0.09926217253610048
DEHIYPYMY	9	Unmodified	_DEHIYPYMY_					0	0	0		MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant;nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant	MEN1|p.R521Gfs*43|3|0.32|ENSG00000133895|chr11:64804621-64804621|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	615.7604370117188	2	615.760432	1229.50631	0.41758	0.00025713	-0.092179	-5.676E-05	0.3254	0.00020037	615.760470702956	47.015	0.31279	46.701	46.542	46.855	-0.31405					12	5	3	0	0	0	0.1037	1	17641	17641		57.471	46.647	1	7133800			5475	3256	2930	2957	5371	5371					-0.09926217253610048
DEHLNQLLT	9	Unmodified	_DEHLNQLLT_					0	0	0			REV__ENSG00000185215|ENST00000560869|TNFAIP2	REV__ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	HCT116MG_D190212_S1	1	361.52056884765625	3	361.520739	1081.54039	-0.018389	-6.6479E-06	-0.32465	-0.00011737	-0.34304	-0.00012402	361.5206424866007	21.146	0.26752	21.146	21.012	21.279	0					7	4	2	0	0	0	0.59439	1	7452	7452		11.495	0	1	4476100	+		5476	13833	2931	2958	5372	5372					0.0028794722966267727
DEHLQLISL	9	Unmodified	_DEHLQLISL_					0	0	0		ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2906494140625	2	534.290214	1066.56587	0.45362	0.00024236	-0.093571	-4.9994E-05	0.36005	0.00019237	534.2901643141598	54.876	0.205	54.688	54.56	54.765	-0.18797					8	3	3	0	0	0	0.0044301	1	21151	21151		144.35	40.602	1	80134000			5477	4648	2932	2959	5373	5373					0.035254217521242026
DEHLQLISL	9	Unmodified	_DEHLQLISL_					0	0	0		ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	ENSG00000163918|ENST00000296273|RFC4	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2904052734375	2	534.290214	1066.56587	0.47127	0.0002518	0.20268	0.00010829	0.67395	0.00036008	534.2901031080941	54.983	0.20908	54.691	54.56	54.77	-0.2918					7	3	3	0	0	0	0.32978	1	20876	20876		27.629	6.0918	1	7943600			5478	4648	2932	2959	5374	5374					0.035254217521242026
DEHLYVAF	8	Unmodified	_DEHLYVAF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S2	2	497.2378845214844	2	497.23745	992.460347	0.34994	0.000174	0.34004	0.00016908	0.68998	0.00034308	497.23770407254017	51.291	0.25699	51.112	50.966	51.223	-0.17868					7	4	2	0	0	0	0.46267	2	19699	19660;19699		44.407	23.953	1	14332000			5479	1778	2933	2960	5375;5376	5376					-0.03618494373529302
DEHLYVAF	8	Unmodified	_DEHLYVAF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	HCT116MG_D190212_S3	3	496.5797424316406	2	497.23745	992.460347	0.32479	0.0001615	1.8788	0.00093423	2.2036	0.0010957	497.237853619019	51.458	0.26267	51.146	51.015	51.277	-0.31166					6	4	2	0	0	0	0.31855	1	19470	19470		8.5933	7.9029	1	1662500			5480	1778	2933	2960	5377	5377					-0.03618494373529302
DEHNIQNY	8	Unmodified	_DEHNIQNY_					0	0	0		ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7230224609375	2	516.722695	1031.43084	0.26649	0.0001377	0.34766	0.00017964	0.61415	0.00031734	516.7227148291839	24.75	0.31152	24.37	24.239	24.551	-0.38003					8	5	2	0	0	0	0.12693	1	8909	8909		88.904	36.635	1	18989000			5481	222	2934	2961	5378	5378					-0.08362058389661797
DEHNIQNY	8	Unmodified	_DEHNIQNY_					0	0	0		ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	516.7225952148438	2	516.722695	1031.43084	0.21147	0.00010927	0.16855	8.7092E-05	0.38002	0.00019636	516.7226420804787	24.503	0.20852	24.419	24.341	24.549	-0.083694					5	3	2	0	0	0	0.21275	1	8736	8736		71.134	33.16	1	5430000			5482	222	2934	2961	5379	5379					-0.08362058389661797
DEHVISNNF	9	Unmodified	_DEHVISNNF_					0	0	0		ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7455444335938	2	537.74617	1073.47779	0.64424	0.00034644	-1.0997	-0.00059136	-0.45546	-0.00024492	537.7457472846129	36.38	0.25912	36.252	36.071	36.33	-0.12799					9	4	3	0	0	0	0.20983	1	13630	13630		40.239	17.503	1	21164000			5483	1341	2935	2962	5380	5380					-0.05601198838530763
DEIDFKETGF	10	Unmodified	_DEIDFKETGF_					0	0	0		nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	MULTI-MSMS	HCT116MG_D190212_S1	1	600.7747192382812	2	600.774593	1199.53463	0.59055	0.00035479	0.534	0.00032081	1.1245	0.0006756	600.7746175048167	46.674	0.25946	46.674	46.543	46.803	0					12	4	4	0	0	0	0.0095435	1	17739	17739		151.48	99.85	1	17402000			5484	2233	2936	2963	5381	5381					-0.05715196072674189
DEIDFKETGF	10	Unmodified	_DEIDFKETGF_					0	0	0		nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	MULTI-MSMS	HCT116MG_D190212_S2	2	600.7750244140625	2	600.774593	1199.53463	1.1754	0.00070615	-0.58471	-0.00035128	0.59069	0.00035487	600.7741191745132	46.762	0.46236	46.651	46.369	46.831	-0.11121					17	8	4	0	0	0	0.027082	1	17824	17824		107.56	59.815	1	125880000			5485	2233	2936	2963	5382	5382					-0.05715196072674189
DEIDFKETGF	10	Unmodified	_DEIDFKETGF_					0	0	0		nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	MULTI-MSMS	HCT116MG_D190212_S3	3	600.7757568359375	2	600.774593	1199.53463	0.62177	0.00037354	0.83226	0.0005	1.454	0.00087354	600.7749385849885	46.934	0.20856	46.62	46.542	46.75	-0.31405					5	3	2	0	0	0	0.13545	1	17642	17642		67.081	39.452	1	4598100			5486	2233	2936	2963	5383	5383					-0.05715196072674189
DEIDISSY	8	Unmodified	_DEIDISSY_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000376177.6_1_6:31498213-31498830:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	HCT116MG_D190212_S2	2	941.4110107421875	1	941.409834	940.402557	0.62454	0.00058795	0.14114	0.00013287	0.76567	0.00072081	941.4098341826013	42.151	0.25885	42.083	41.913	42.172	-0.068199					6	4	2	0	0	0	0.062806	1	15967	15967		109.63	2.7838	1	18360000			5487	6241	2937	2964	5384	5384					-0.07002801089606692
DEIDISSY	8	Unmodified	_DEIDISSY_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000376177.6_1_6:31498213-31498830:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	HCT116MG_D190212_S3	3	941.4100952148438	1	941.409834	940.402557	0.64797	0.00061	-0.1239	-0.00011664	0.52407	0.00049336	941.4097267261753	42.382	0.46955	42.078	41.883	42.353	-0.30352					17	8	3	0	0	0	0.15838	1	15785	15785		81.864	7.4677	1	13363000			5488	6241	2937	2964	5385	5385					-0.07002801089606692
DEIDISSY	8	Unmodified	_DEIDISSY_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000376177.6_1_6:31498213-31498830:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	HCT116MG_D190212_S4	4	941.4111938476562	1	941.409834	940.402557	0.6251	0.00058848	0.21077	0.00019842	0.83587	0.0007869	941.4098624428515	42.397	0.41487	42.021	41.839	42.254	-0.37565					18	7	4	0	0	0	0.12463	1	15590	15590		89.427	15.03	1	15669000			5489	6241	2937	2964	5386	5386					-0.07002801089606692
DEIEANVK	8	Unmodified	_DEIEANVK_					0	0	0		tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1	tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1	tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	459.232666015625	2	459.232364	916.450176	0.013829	6.3509E-06	0.073573	3.3787E-05	0.087402	4.0138E-05	459.23254987261004	18.201	0.20658	18.026	17.896	18.102	-0.17501					5	3	2	0	0	0	0.79062	1	6121	6121		12.532	3.1484	1	1513000			5490	18313	2938	2965	5387	5387					-0.011391020987616685
DEIEMLERL	9	Unmodified	_DEIEMLERL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	HCT116MG_D190212_S2	2	574.2870483398438	2	574.286814	1146.55907	0.34362	0.00019734	0.14686	8.434E-05	0.49048	0.00028168	574.2868666184396	55.03	0.2038	54.842	54.714	54.918	-0.18797					5	3	2	0	0	0	0.25891	1	21224	21224		43.982	13.345	1	85368000			5491	2010	2939	2966	5388	5388					-0.008342591907648966
DEIEPAAM	8	Unmodified	_DEIEPAAM_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S3	3	875.3818969726562	1	875.38151	874.374234	0.59604	0.00052176	-0.38864	-0.00034021	0.2074	0.00018155	875.3811340113291	36.472	0.36426	36.171	35.989	36.353	-0.30113					11	6	2	0	0	0	0.052199	1	13489	13489		120.86	53.821	1	6260700			5492	2442	2940	2967	5389	5389					-0.06797822270550569
DEIEQKRIA	9	Unmodified	_DEIEQKRIA_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	HCT116MG_D190212_S2	2	551.7999877929688	2	551.29857	1100.58259	0.30168	0.00016632	-0.14956	-8.2453E-05	0.15212	8.3865E-05	551.2984871349126	25.695	0.36332	25.325	25.135	25.498	-0.36914					11	6	2	0	0	0	0.2333	1	9270	9270		40.239	3.733	1	21955000	+		5493	10635	2941	2968	5390	5390					0.03631922638055585
DEIEQKRIA	9	Unmodified	_DEIEQKRIA_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	551.29857	1100.58259	0.30168	0.00016632	-0.14956	-8.2453E-05	0.15212	8.3865E-05	551.2984871349126	25.695	0.36332	25.325	25.135	25.498	-0.36914	-0.0040712	-1.1011E-05	NaN	40.239	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21955000	+		5494	10635	2941	2968							0.03631922638055585
DEIEQKRIA	9	Unmodified	_DEIEQKRIA_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	HCT116MG_D190212_S4	4		2	551.29857	1100.58259	0.62959	0.00034709	-0.064143	-3.5362E-05	0.56545	0.00031173	551.298479892561	25.624	0.20812	25.334	25.204	25.412	-0.29022	0.0040712	8.317E-05	NaN	40.239	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1758700	+		5495	10635	2941	2968							0.03631922638055585
DEIEVLVGK	9	Unmodified	_DEIEVLVGK_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	HCT116MG_D190212_S2	2	1003.5604858398438	1	1001.55135	1000.54408	0.50936	0.00051015	0.26821	0.00026863	0.77757	0.00077877	1001.5513184787704	54.216	0.41053	54.026	53.842	54.252	-0.1894					21	7	4	0	0	0	0.2853	1	20947	20947		32.305	3.2239	1	121680000	+		5496	13783	2942	2969	5391	5391					0.043826170035458745
DEIEWHIVQN	10	Unmodified	_DEIEWHIVQN_					0	0	0			REV__ENST00000541190.5_1_18:33709896-33716400:+|nuORF	REV__ENST00000541190.5_1_18:33709896-33716400:+|nuORF	MSMS	HCT116MG_D190212_S3	3	428.2055969238281	3	428.206932	1281.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.964	1	22.945	22.445	23.445	-0.018869								0	0	0	0.76907	1	8084	8084		22.775	0.9755	1		+		5497	12065	2943	2970	5392	5392					-0.030569961958690328
DEIEWHIVQN	10	Unmodified	_DEIEWHIVQN_					0	0	0			REV__ENST00000541190.5_1_18:33709896-33716400:+|nuORF	REV__ENST00000541190.5_1_18:33709896-33716400:+|nuORF	MSMS	HCT116MG_D190212_S3	3	641.804443359375	2	641.806759	1281.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.969	1	22.95	22.45	23.45	-0.018869								0	0	0	0.85631	1	8086	8086		21.537	0	1		+		5498	12065	2943	2970	5393	5393					-0.030569961958690328
DEIFHDVAY	9	Unmodified	_DEIFHDVAY_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;SLC4A7|p.S1176Kfs*13|1|0.68|ENSG00000033867|chr3:27383191-27383192|-/C|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;SLC4A7|p.L1003Wfs*11|1|0.39|ENSG00000033867|chr3:27394600-27394600|A/-|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;ENST00000550211.1_1_12:51855003-51860258:+|nuORF;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;SLC4A8|p.F597Lfs*4|1|0.04|ENSG00000050438|chr12:51471417-51471417|T/-|frameshift_variant;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8	ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8	ENSG00000033867|ENST00000454389|SLC4A7	MULTI-MSMS	HCT116MG_D190212_S2	2	554.7517700195312	2	554.750921	1107.48729	0.42331	0.00023483	0.68632	0.00038074	1.1096	0.00061557	554.7514743857802	45.115	0.36588	45.022	44.839	45.205	-0.092472					12	6	2	0	0	0	0.020181	1	17163	17163		96.285	62.182	1	42182000			5499	976;1052	2944	2971	5394	5394					-0.06215430552992984
DEIFHDVAY	9	Unmodified	_DEIFHDVAY_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;SLC4A7|p.S1176Kfs*13|1|0.68|ENSG00000033867|chr3:27383191-27383192|-/C|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;SLC4A7|p.L1003Wfs*11|1|0.39|ENSG00000033867|chr3:27394600-27394600|A/-|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;ENST00000550211.1_1_12:51855003-51860258:+|nuORF;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;SLC4A8|p.F597Lfs*4|1|0.04|ENSG00000050438|chr12:51471417-51471417|T/-|frameshift_variant;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8	ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8	ENSG00000033867|ENST00000454389|SLC4A7	MULTI-MSMS	HCT116MG_D190212_S3	3	554.751220703125	2	554.750921	1107.48729	0.43073	0.00023895	0.15901	8.8209E-05	0.58974	0.00032716	554.7509329492918	45.312	0.26103	45.002	44.888	45.149	-0.31042					7	4	2	0	0	0	0.012168	1	16976	16976		108	57.142	1	5627600			5500	976;1052	2944	2971	5395	5395					-0.06215430552992984
DEIGKMELF	9	Unmodified	_DEIGKMELF_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	541.2651977539062	2	541.26535	1080.51615	0.41281	0.00022344	-0.57009	-0.00030857	-0.15727	-8.5126E-05	541.2649580947373	53.954	0.25745	53.764	53.584	53.842	-0.1894					8	4	2	0	0	0	0.026272	1	20776	20776		90.135	36.559	1	17473000			5501	3374	2945	2972	5396	5396					-0.020890292482363293
DEIHSIAW	8	Unmodified	_DEIHSIAW_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S1	1	485.7353210449219	2	485.735074	969.455596	0.061181	2.9718E-05	0.51758	0.00025141	0.57876	0.00028113	485.7352394844039	48.107	0.25869	48.107	47.944	48.203	0					9	4	3	0	0	0	0.25164	1	18320	18320		63.563	31.446	1	11210000			5502	1423	2946	2973	5397	5397					-0.030353785162787972
DEIHSIAW	8	Unmodified	_DEIHSIAW_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S3	3	485.7350158691406	2	485.735074	969.455596	0.30319	0.00014727	-0.10144	-4.9274E-05	0.20175	9.7998E-05	485.7350026443927	48.378	0.20845	48.062	47.932	48.14	-0.31596					6	3	2	0	0	0	0.23352	1	18204	18204		67.035	20.114	1	6293100			5503	1423	2946	2973	5398	5398					-0.030353785162787972
DEIKIGTSC	9	Unmodified	_DEIKIGTSC_					0	0	0		ENST00000582850.1_1_18:2945885-2946149:-|nuORF;nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	ENST00000582850.1_1_18:2945885-2946149:-|nuORF	ENST00000582850.1_1_18:2945885-2946149:-|nuORF	MSMS	HCT116MG_D190212_S2	2	483.2344970703125	2	483.23405	964.453547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.51	1	33.317	32.817	33.817	-0.19297								0	0	0	0.054343	1	12437	12437		69.105	31.131	1				5504	2239	2947	2974	5399	5399					-0.030101753163989997
DEIKKNKF	8	Unmodified	_DEIKKNKF_					0	0	0			REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	REV__tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	511.26953125	2	511.287474	1020.5604	0.21102	0.00010789	0.26279	0.00013436	0.47381	0.00024225	511.78949537663937	44.571	0.19532	44.198	44.019	44.215	-0.37326					5	3	2	0	0	0	0.2797	1	16412	16412		28.487	0	1	2572700	+		5505	17666	2948	2975	5400	5400					0.05093742960286818
DEILIKKLR	9	Unmodified	_DEILIKKLR_					0	0	0			REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	564.3583374023438	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.298	1	54.109	53.609	54.609	-0.1894								0	0	0	0.76902	1	20901	20901		4.3292	0	1		+		5506	11907	2949	2976	5401	5401					0.14910839845219925
DEILKTRF	8	Unmodified	_DEILKTRF_					0	0	0		REV3L|p.E2691D|1|0.35|ENSG00000009413|chr6:111329700-111329700|T/G|missense_variant	REV3L|p.E2691D|1|0.35|ENSG00000009413|chr6:111329700-111329700|T/G|missense_variant	REV3L|p.E2691D|1|0.35|ENSG00000009413|chr6:111329700-111329700|T/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	511.2695007324219	2	511.287474	1020.5604	0.40216	0.00020562	-0.87141	-0.00044554	-0.46924	-0.00023992	511.2869061844108	44.474	0.20775	44.166	44.019	44.227	-0.30759					6	3	2	0	0	0	0.22358	1	16626	16626		41.84	0	1	13793000			5507	18099	2950	2977	5402	5402					0.05093742960275449
DEINKHTEM	9	Unmodified	_DEINKHTEM_					0	0	0		CON__H-INV:HIT000292931;ENST00000551916.1_1_12:62273577-62274426:+|nuORF	CON__H-INV:HIT000292931;ENST00000551916.1_1_12:62273577-62274426:+|nuORF	CON__H-INV:HIT000292931	MULTI-MSMS	HCT116MG_D190212_S3	3	558.7528686523438	2	558.753138	1115.49172	0.53031	0.00029631	-0.73783	-0.00041226	-0.20752	-0.00011595	558.7529809087793	44.093	0.36434	43.786	43.551	43.916	-0.30759					13	6	3	0	0	0	0.60612	1	16458	16458		10.824	2.2306	1	11530000		+	5508	541;8761	2951	2978	5403	5403					-0.061402894017419385
DEINLPDM	8	Unmodified	_DEINLPDM_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	946.418212890625	1	946.418624	945.411348	0.60485	0.00057244	-0.14081	-0.00013327	0.46404	0.00043917	946.4181790478121	50.234	0.41512	50.062	49.883	50.298	-0.1719					11	7	2	0	0	0	0.12693	1	19259	19259		88.904	40.558	1	62697000			5509	741	2952	2979	5404	5404					-0.06354150724791907
DEINLPDM	8	Unmodified	_DEINLPDM_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	946.4189453125	1	946.418624	945.411348	0.6325	0.00059861	-0.033079	-3.1306E-05	0.59943	0.00056731	946.4184664036234	50.446	0.46987	50.132	49.915	50.385	-0.31433					19	8	3	0	0	0	0.12693	1	19012	19012		88.904	40.558	1	35080000			5510	741	2952	2979	5405	5405					-0.06354150724791907
DEINLPDM	8	Unmodified	_DEINLPDM_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	473.7128601074219	2	473.71295	945.411348	0.13641	6.4618E-05	-0.096139	-4.5542E-05	0.040267	1.9075E-05	473.71293692739516	50.413	0.31287	50.097	49.967	50.28	-0.31525					8	5	2	0	0	0	0.60054	1	19041	19041		32.305	15.363	1	6006200			5511	741	2952	2979	5406	5406					-0.06354150724791907
DEINLPDM	8	Unmodified	_DEINLPDM_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	946.4182739257812	1	946.418624	945.411348	0.49014	0.00046387	-0.68096	-0.00064447	-0.19082	-0.0001806	946.4179006020464	50.438	0.2077	50.079	49.949	50.157	-0.35878					6	3	2	0	0	0	0.1772	1	18748	18748		78.149	29.804	1	7848200			5512	741	2952	2979	5407	5407					-0.06354150724791907
DEINLPDM	8	Unmodified	_DEINLPDM_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	946.418624	945.411348	0.72238	0.00068367	-0.0081236	-7.6883E-06	0.71425	0.00067598	946.4186128750089	50.033	0.15424	50.033	49.905	50.059	0	-0.043102	0.0001165	NaN	88.904	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10047000			5513	741	2952	2979							-0.06354150724791907
DEINLPDM	8	Oxidation (M)	_DEINLPDM(Oxidation (M))_		DEINLPDM(1)		DEINLPDM(100)	0	0	1		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	962.4132080078125	1	962.413539	961.406262	0.34345	0.00033054	0.072374	6.9653E-05	0.41582	0.00040019	962.413906191931	38.004	0.21824	37.622	37.542	37.76	-0.38283					12	9	2	0	0	0	0.076688	1	13930	13930		100.37	46.796	1	4871400			5514	741	2952	2980	5408	5408		15			-0.07598454587400738
DEIRLKIV	8	Unmodified	_DEIRLKIV_					0	0	0		ENST00000525455.5_1_11:62530233-62533976:+|nuORF;ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	493.3058166503906	2	493.305667	984.596781	0.12855	6.3413E-05	-3.5904	-0.0017711	-3.4618	-0.0017077	493.30586866871084	42.307	0.31189	42.307	42.123	42.435	0					11	5	3	0	0	0	0.14122	2	15997	15961;15997		85.642	3.86	1	11968000			5515	4973	2953	2981	5409;5410	5410					0.10386619856990364
DEIRLKIV	8	Unmodified	_DEIRLKIV_					0	0	0		ENST00000525455.5_1_11:62530233-62533976:+|nuORF;ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	493.3056335449219	2	493.305667	984.596781	0.28377	0.00013998	-1.6367	-0.00080742	-1.353	-0.00066743	493.3057035294918	42.307	0.311	42.239	42.068	42.379	-0.068195					16	5	4	0	0	0	0.095352	2	16037	16000;16037		96.111	14.221	1	50618000			5516	4973	2953	2981	5411;5412	5412					0.10386619856990364
DEIRLKIV	8	Unmodified	_DEIRLKIV_					0	0	0		ENST00000525455.5_1_11:62530233-62533976:+|nuORF;ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	493.30609130859375	2	493.305667	984.596781	0.28227	0.00013924	0.48954	0.00024149	0.77181	0.00038074	493.3058307850795	42.63	0.20853	42.327	42.196	42.405	-0.30352					6	3	2	0	0	0	0.1893	1	15894	15894		75.761	13.188	1	9829100			5517	4973	2953	2981	5413	5413					0.10386619856990364
DEIRLKIV	8	Unmodified	_DEIRLKIV_					0	0	0		ENST00000525455.5_1_11:62530233-62533976:+|nuORF;ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	493.3059387207031	2	493.305667	984.596781	0.2218	0.00010942	0.18833	9.2905E-05	0.41013	0.00020232	493.3057554751615	42.677	0.20234	42.302	42.202	42.405	-0.37493					6	3	2	0	0	0	0.14122	1	15710	15710		85.642	13.719	1	2748600			5518	4973	2953	2981	5414	5414					0.10386619856990364
DEISFVNF	8	Unmodified	_DEISFVNF_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;SSRP1|p.R370C|1|0.21|ENSG00000149136|chr11:57331783-57331783|G/A|missense_variant;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	HCT116MG_D190212_S2	2	970.4522705078125	1	970.451639	969.444362	0.72638	0.00070491	0.099324	9.6389E-05	0.8257	0.0008013	970.4516024571107	56.945	0.26046	56.766	56.635	56.895	-0.17904					12	4	4	0	0	0	0.19622	1	21979	21979		74.396	24.727	1	131870000			5519	4043	2954	2982	5415	5415					-0.04158200610413587
DEISFVNF	8	Unmodified	_DEISFVNF_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;SSRP1|p.R370C|1|0.21|ENSG00000149136|chr11:57331783-57331783|G/A|missense_variant;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	HCT116MG_D190212_S2	2	485.7295227050781	2	485.729458	969.444362	0.27311	0.00013266	0.060419	2.9347E-05	0.33353	0.000162	485.72943179379473	56.945	0.20896	56.766	56.635	56.844	-0.17904					7	3	3	0	0	0	0.25164	1	21989	21989		63.563	27.519	1	21162000			5520	4043	2954	2982	5416	5416					-0.04158200610413587
DEISFVNF	8	Unmodified	_DEISFVNF_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;SSRP1|p.R370C|1|0.21|ENSG00000149136|chr11:57331783-57331783|G/A|missense_variant;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	HCT116MG_D190212_S3	3	970.452392578125	1	970.451639	969.444362	0.72072	0.00069942	0.036018	3.4953E-05	0.75674	0.00073438	970.4515722676882	57.035	0.31264	56.755	56.625	56.937	-0.27913					15	5	4	0	0	0	0.15965	1	21668	21668		81.613	18.05	1	34257000			5521	4043	2954	2982	5417	5417					-0.04158200610413587
DEISFVNF	8	Unmodified	_DEISFVNF_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;SSRP1|p.R370C|1|0.21|ENSG00000149136|chr11:57331783-57331783|G/A|missense_variant;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	HCT116MG_D190212_S3	3	485.7294921875	2	485.729458	969.444362	0.33679	0.00016359	-0.071181	-3.4575E-05	0.26561	0.00012901	485.7293143643653	57.034	0.26043	56.755	56.625	56.885	-0.27913					10	4	3	0	0	0	0.25164	1	21688	21688		63.563	25.412	1	7488600			5522	4043	2954	2982	5418	5418					-0.04158200610413587
DEISFVNF	8	Unmodified	_DEISFVNF_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;SSRP1|p.R370C|1|0.21|ENSG00000149136|chr11:57331783-57331783|G/A|missense_variant;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	HCT116MG_D190212_S4	4	970.452392578125	1	970.451639	969.444362	0.75594	0.00073361	0.15653	0.00015191	0.91248	0.00088552	970.4516179207643	57.053	0.20824	56.753	56.623	56.831	-0.3004					9	3	3	0	0	0	0.19622	1	21408	21408		74.396	24.727	1	13698000			5523	4043	2954	2982	5419	5419					-0.04158200610413587
DEISFVNF	8	Unmodified	_DEISFVNF_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;SSRP1|p.R370C|1|0.21|ENSG00000149136|chr11:57331783-57331783|G/A|missense_variant;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	HCT116MG_D190212_S4	4	485.7297058105469	2	485.729458	969.444362	0.16325	7.9297E-05	0.64826	0.00031488	0.81151	0.00039418	485.7295625058998	57.053	0.26035	56.753	56.623	56.883	-0.3004					5	4	2	0	0	0	0.21487	1	21411	21411		70.716	26.309	1	2990800			5524	4043	2954	2982	5420	5420					-0.04158200610413587
DEISFVNF	8	Unmodified	_DEISFVNF_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;SSRP1|p.R370C|1|0.21|ENSG00000149136|chr11:57331783-57331783|G/A|missense_variant;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	970.451639	969.444362	0.64744	0.00062831	-0.32374	-0.00031418	0.3237	0.00031414	970.4510805475229	56.748	0.15491	56.748	56.634	56.789	0	-0.0076334	-0.00039315	NaN	81.613	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12795000			5525	4043	2954	2982							-0.04158200610413587
DEITNFSI	8	Unmodified	_DEITNFSI_					0	0	0			REV__tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1	REV__tr|U7STK8|U7STK8_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01522PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	469.7509460449219	2	469.726915	937.439277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.873	1	46.559	46.059	47.059	-0.31405								0	0	0	0.8396	1	17587	17587		19.439	0.18201	1		+		5526	17804	2955	2983	5421	5421					-0.03194504473037796
DEITVDDVF	9	Unmodified	_DEITVDDVF_					0	0	0			REV__ENSG00000132823|ENST00000255174|OSER1	REV__ENSG00000132823|ENST00000255174|OSER1	MULTI-MSMS	HCT116MG_D190212_S3	3	527.0142822265625	2	526.742762	1051.47097	0.30151	0.00015882	0.82377	0.00043392	1.1253	0.00059273	526.7431460026352	50.048	0.31228	49.733	49.602	49.914	-0.31525					7	5	2	0	0	0	0.57626	1	18929	18929		12.532	4.6214	1	6255200	+		5527	12005	2956	2984	5422	5422					-0.05270556509776725
DEIVAQPRR	9	Unmodified	_DEIVAQPRR_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MSMS	HCT116MG_D190212_S1	1	542.7308959960938	2	542.298904	1082.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.327	1	24.327	23.827	24.827	0								0	0	0	0.76694	1	8704	8704		11.64	0.81637	1		+		5528	14071	2957	2985	5423	5423					0.04526762077762214
DEIVVSTY	8	Unmodified	_DEIVVSTY_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-MSMS	HCT116MG_D190212_S3	3	925.4511108398438	1	925.451305	924.444028	0.7168	0.00066336	-0.13246	-0.00012258	0.58434	0.00054078	925.4508511565144	40.126	0.20798	39.825	39.747	39.955	-0.30137					5	3	2	0	0	0	0.28659	1	14927	14927		60.39	28.273	1	3442500			5529	3577	2958	2986	5424	5424					-0.02121620330285623
DEKDFYLY	8	Unmodified	_DEKDFYLY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S3	3	546.7481079101562	2	546.747847	1091.48114	0.51385	0.00028095	0.31611	0.00017283	0.82996	0.00045378	546.7479118096704	48.274	0.36494	47.958	47.775	48.14	-0.31596					15	6	3	0	0	0	0.20876	1	18158	18158		71.922	23.576	1	20490000			5530	1532	2959	2987	5425	5425					-0.06093948784518943
DEKDFYLY	8	Unmodified	_DEKDFYLY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S4	4	546.7485961914062	2	546.747847	1091.48114	0.47107	0.00025756	0.70947	0.0003879	1.1805	0.00064546	546.7481986872257	48.328	0.20731	47.961	47.832	48.039	-0.36728					6	3	2	0	0	0	0.40176	1	17907	17907		49.933	1.5872	1	5999900			5531	1532	2959	2987	5426	5426					-0.06093948784518943
DEKDFYLYY	9	Unmodified	_DEKDFYLYY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-SECPEP	HCT116MG_D190212_S3	3	628.3828735351562	2	628.279512	1254.54447	0.429	0.00026953	-0.39429	-0.00024772	0.034713	2.181E-05	628.2790152546469	51.861	0.20938	51.552	51.384	51.594	-0.30927					5	3	2	0	0	0	0.26234	1	19598	19598		5.7319	0	1	2564800			5532	1532	2960	2988	5427	5427					-0.07262008067277748
DEKEFIHF	8	Unmodified	_DEKEFIHF_					0	0	0		MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant;ENSG00000066697|ENST00000395067|MSANTD3	MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant	MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7562866210938	2	532.756007	1063.49746	0.45806	0.00024403	0.0097631	5.2014E-06	0.46782	0.00024923	532.7559436683689	45.99	0.25676	45.889	45.71	45.966	-0.1014					10	4	3	0	0	0	0.058063	2	17534	17460;17534		114.65	76.675	1	28286000			5533	1175	2961	2989	5428;5429	5429					-0.03174822827782009
DEKEFIHF	8	Unmodified	_DEKEFIHF_					0	0	0		MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant;ENSG00000066697|ENST00000395067|MSANTD3	MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant	MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	533.2587280273438	2	532.756007	1063.49746	0.72709	0.00038736	0.16249	8.6569E-05	0.88958	0.00047393	533.2578149088614	46.265	0.12443	45.952	45.902	46.026	-0.31237					5	3	2	0	0	0	0.12799	1	17360	17360		81.613	49.308	1	4664200			5534	1175	2961	2989	5430	5430					-0.03174822827782009
DEKEISHVL	9	Unmodified	_DEKEISHVL_					0	0	0		nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-MSMS	HCT116MG_D190212_S1	1	535.2799072265625	2	535.279846	1068.54514	0.43067	0.00023053	-0.17765	-9.5093E-05	0.25302	0.00013544	535.2796984001867	34.311	0.20856	34.311	34.181	34.389	0					6	3	2	0	0	0	0.0043772	1	12738	12738		145.13	83.772	1	10059000			5535	4691	2962	2990	5431	5431					0.013608313724262189
DEKEISHVL	9	Unmodified	_DEKEISHVL_					0	0	0		nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-MSMS	HCT116MG_D190212_S2	2	535.2800903320312	2	535.279846	1068.54514	0.69928	0.00037431	-0.088999	-4.7639E-05	0.61028	0.00032667	535.2795817794448	34.429	0.25845	34.253	34.124	34.382	-0.17512					8	4	3	0	0	0	0.0096585	1	12834	12834		114.19	70.328	1	21144000			5536	4691	2962	2990	5432	5432					0.013608313724262189
DEKIAWAL	8	Unmodified	_DEKIAWAL_					0	0	0		GLO1|p.K96E|1|0.2|ENSG00000124767|chr6:38684396-38684396|T/C|missense_variant;nc|ENSG00000124767|Q04760-2|GLO1;ENSG00000124767|ENST00000373365|GLO1	GLO1|p.K96E|1|0.2|ENSG00000124767|chr6:38684396-38684396|T/C|missense_variant	GLO1|p.K96E|1|0.2|ENSG00000124767|chr6:38684396-38684396|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	473.25506591796875	2	473.255643	944.496732	0.16436	7.7786E-05	-0.18918	-8.9531E-05	-0.024818	-1.1745E-05	473.2553767083715	53.881	0.36041	53.691	53.532	53.893	-0.1894					10	6	2	0	0	0	0.33298	1	20746	20746		56.177	9.2562	1	17544000			5537	2862	2963	2991	5433	5433					0.02226382523178927
DEKIAWAL	8	Unmodified	_DEKIAWAL_					0	0	0		GLO1|p.K96E|1|0.2|ENSG00000124767|chr6:38684396-38684396|T/C|missense_variant;nc|ENSG00000124767|Q04760-2|GLO1;ENSG00000124767|ENST00000373365|GLO1	GLO1|p.K96E|1|0.2|ENSG00000124767|chr6:38684396-38684396|T/C|missense_variant	GLO1|p.K96E|1|0.2|ENSG00000124767|chr6:38684396-38684396|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2558898925781	2	473.255643	944.496732	0.17925	8.4831E-05	0.14721	6.9667E-05	0.32646	0.0001545	473.2556621367629	54.042	0.31186	53.743	53.561	53.873	-0.29946					11	5	3	0	0	0	0.19352	1	20473	20473		74.929	11.366	1	6186200			5538	2862	2963	2991	5434	5434					0.02226382523178927
DEKIISGL	8	Unmodified	_DEKIISGL_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	HCT116MG_D190212_S2	2	437.7474670410156	2	437.74765	873.480748	0.023895	1.046E-05	-0.37191	-0.0001628	-0.34801	-0.00015234	437.74749049672107	42.328	0.25877	42.259	42.068	42.326	-0.068592					7	4	2	0	0	0	0.061818	1	16039	16039		110.67	13.6	1	15744000			5539	1276	2964	2992	5435	5435					0.03894676286279264
DEKIISGL	8	Unmodified	_DEKIISGL_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	HCT116MG_D190212_S3	3	437.7477722167969	2	437.74765	873.480748	0.25033	0.00010958	-0.096651	-4.2309E-05	0.15368	6.7274E-05	437.74752463656614	42.578	0.26105	42.275	42.092	42.353	-0.30352					7	4	2	0	0	0	0.46892	1	15881	15881		43.858	7.7313	1	3223100			5540	1276	2964	2992	5436	5436					0.03894676286279264
DEKILIQH	8	Unmodified	_DEKILIQH_					0	0	0		ZNF207|p.K107Rfs*57|1|0.46|ENSG00000010244|chr17:32360604-32360604|A/-|frameshift_variant;ENST00000577324.1_1_17:30677304-30687987:+|nuORF;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	ZNF207|p.K107Rfs*57|1|0.46|ENSG00000010244|chr17:32360604-32360604|A/-|frameshift_variant	ZNF207|p.K107Rfs*57|1|0.46|ENSG00000010244|chr17:32360604-32360604|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	498.2797546386719	2	498.279649	994.544745	0.44088	0.00021968	-0.093685	-4.6682E-05	0.3472	0.000173	498.2795397027335	27.93	0.36459	27.93	27.748	28.113	0					9	6	2	0	0	0	0.044506	1	10180	10180		129.77	62.428	1	11760000			5541	875	2965	2993	5437	5437					0.04725456443236453
DEKILIQH	8	Unmodified	_DEKILIQH_					0	0	0		ZNF207|p.K107Rfs*57|1|0.46|ENSG00000010244|chr17:32360604-32360604|A/-|frameshift_variant;ENST00000577324.1_1_17:30677304-30687987:+|nuORF;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	ZNF207|p.K107Rfs*57|1|0.46|ENSG00000010244|chr17:32360604-32360604|A/-|frameshift_variant	ZNF207|p.K107Rfs*57|1|0.46|ENSG00000010244|chr17:32360604-32360604|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	498.2798156738281	2	498.279649	994.544745	0.3809	0.00018979	-0.12245	-6.1014E-05	0.25845	0.00012878	498.2795965327929	28.369	0.20732	28.04	27.874	28.081	-0.32987					5	3	2	0	0	0	0.017913	1	10358	10358		155.03	83.104	1	25619000			5542	875	2965	2993	5438	5438					0.04725456443236453
DEKILIQH	8	Unmodified	_DEKILIQH_					0	0	0		ZNF207|p.K107Rfs*57|1|0.46|ENSG00000010244|chr17:32360604-32360604|A/-|frameshift_variant;ENST00000577324.1_1_17:30677304-30687987:+|nuORF;nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	ZNF207|p.K107Rfs*57|1|0.46|ENSG00000010244|chr17:32360604-32360604|A/-|frameshift_variant	ZNF207|p.K107Rfs*57|1|0.46|ENSG00000010244|chr17:32360604-32360604|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2798767089844	2	498.279649	994.544745	0.31819	0.00015855	0.060843	3.0317E-05	0.37903	0.00018886	498.27963403054474	28.304	0.26114	28.098	27.968	28.229	-0.20593					7	4	2	0	0	0	0.054833	1	10263	10263		118.07	69.723	1	8376300			5543	875	2965	2993	5439	5439					0.04725456443236453
DEKKFDEAL	9	Unmodified	_DEKKFDEAL_					0	0	0		nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF	nc|ENSG00000152556|P08237-2|PFKM	nc|ENSG00000152556|P08237-2|PFKM	MULTI-MSMS	HCT116MG_D190212_S1	1	547.771728515625	2	547.771854	1093.52915	0.71134	0.00038965	-0.2795	-0.0001531	0.43185	0.00023655	547.771633690079	32.986	0.29758	32.986	32.843	33.141	0					11	5	3	0	0	0	0.0082095	1	12196	12196		117.76	62.258	1	21510000			5544	4154	2966	2994	5440	5440					-0.013868748644881634
DEKKFDEAL	9	Unmodified	_DEKKFDEAL_					0	0	0		nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF	nc|ENSG00000152556|P08237-2|PFKM	nc|ENSG00000152556|P08237-2|PFKM	MULTI-MSMS	HCT116MG_D190212_S2	2	548.2738037109375	2	547.771854	1093.52915	0.74097	0.00040588	-0.0094265	-5.1636E-06	0.73155	0.00040072	547.7717218284208	33.239	0.41262	33.046	32.863	33.276	-0.19297					20	7	4	0	0	0	0.043159	1	12318	12318		78.06	39.885	1	154640000			5545	4154	2966	2994	5441	5441					-0.013868748644881634
DEKKFDEAL	9	Unmodified	_DEKKFDEAL_					0	0	0		nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF	nc|ENSG00000152556|P08237-2|PFKM	nc|ENSG00000152556|P08237-2|PFKM	MULTI-MSMS	HCT116MG_D190212_S3	3	548.2745361328125	2	547.771854	1093.52915	0.51183	0.00028036	0.1243	6.8087E-05	0.63612	0.00034845	547.7719135034645	33.412	0.37594	33.122	32.98	33.356	-0.29013					18	7	4	0	0	0	0.029121	1	12245	12245		87.258	45.419	1	52903000			5546	4154	2966	2994	5442	5442					-0.013868748644881634
DEKKFDEAL	9	Unmodified	_DEKKFDEAL_					0	0	0		nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF	nc|ENSG00000152556|P08237-2|PFKM	nc|ENSG00000152556|P08237-2|PFKM	MULTI-MSMS	HCT116MG_D190212_S4	4	547.7718505859375	2	547.771854	1093.52915	0.8369	0.00045843	0.079459	4.3526E-05	0.91636	0.00050196	547.7717088308412	33.466	0.28716	33.084	32.978	33.265	-0.38223					19	7	4	0	0	0	0.032914	1	12168	12168		83.429	35.083	1	18470000			5547	4154	2966	2994	5443	5443					-0.013868748644881634
DEKKMANF	8	Unmodified	_DEKKMANF_					0	0	0		ENST00000478787.1_1_10:102296230-102304880:+|nuORF;ENSG00000166135|ENST00000299163|HIF1AN	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	MSMS	HCT116MG_D190212_S2	2	491.73699951171875	2	491.73676	981.458967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.798	1	27.456	26.956	27.956	-0.34201								0	0	0	0.14782	1	10113	10113		74.929	38.885	1				5548	4821	2967	2995	5444	5444					-0.03250451733936188
DEKKMANF	8	Unmodified	_DEKKMANF_					0	0	0		ENST00000478787.1_1_10:102296230-102304880:+|nuORF;ENSG00000166135|ENST00000299163|HIF1AN	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	491.73712158203125	2	491.73676	981.458967	0.30322	0.0001491	-0.40557	-0.00019943	-0.10235	-5.0331E-05	491.736538217982	27.575	0.26011	27.387	27.205	27.465	-0.18847					6	4	2	0	0	0	0.46892	1	9932	9932		43.858	18.459	1	2171900			5549	4821	2967	2995	5445	5445					-0.03250451733936188
DEKKMEKL	8	Unmodified	_DEKKMEKL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant;ENST00000378192.2_1_9:35723947-35725691:-|nuORF;TLN1|p.S405Afs*84|1|0.3|ENSG00000137076|chr9:35720503-35720503|T/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	HCT116MG_D190212_S2	2	510.7730712890625	2	510.773342	1019.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.022	1	20.639	20.139	21.139	-0.38288								0	0	0	9.9196E-05	1	7376	7376		129.77	40.372	1				5550	3460	2968	2996	5446	5446					0.023146769886807306
DEKLKAYL	8	Unmodified	_DEKLKAYL_					0	0	0			REV__tr|U7SGI4|U7SGI4_FUSNUAdhesionproteinFadA(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02180PE=4SV=1	REV__tr|U7SGI4|U7SGI4_FUSNUAdhesionproteinFadA(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02180PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	490.2760009765625	2	490.276575	978.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.704	1	51.52	51.02	52.02	-0.18369								0	0	0	0.8837	1	19844	19844		5.7604	0	1		+		5551	17670	2969	2997	5447	5447					0.04846938211687757
DEKLLYDTF	9	Unmodified	_DEKLLYDTF_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MSMS	HCT116MG_D190212_S3	3	572.2822875976562	2	572.282054	1142.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.969	1	51.66	51.16	52.16	-0.30927								0	0	0	0.10186	1	19635	19635		55.503	31.482	1				5552	3803	2970	2998	5448	5448					-0.016017042046769348
DEKLRDYI	8	Unmodified	_DEKLRDYI_					0	0	0		ENST00000546585.1_1_12:56668545-56668962:-|nuORF;ENST00000546621.5_1_12:56667289-56669828:-|nuORF;ENSG00000062485|ENST00000351328|CS	ENST00000546585.1_1_12:56668545-56668962:-|nuORF	ENST00000546585.1_1_12:56668545-56668962:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	526.2745971679688	2	526.274564	1050.53457	0.46616	0.00024533	0.040829	2.1487E-05	0.50699	0.00026682	526.2745180235147	31.435	0.2081	31.435	31.336	31.544	0					5	3	2	0	0	0	0.36353	1	11588	11588		53.404	0	1	4092400			5553	1121	2971	2999	5449	5449					0.011328487179980584
DEKLRDYI	8	Unmodified	_DEKLRDYI_					0	0	0		ENST00000546585.1_1_12:56668545-56668962:-|nuORF;ENST00000546621.5_1_12:56667289-56669828:-|nuORF;ENSG00000062485|ENST00000351328|CS	ENST00000546585.1_1_12:56668545-56668962:-|nuORF	ENST00000546585.1_1_12:56668545-56668962:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	526.274564	1050.53457	0.64007	0.00033685	-0.3099	-0.00016309	0.33017	0.00017376	526.2744759395935	31.629	0.20799	31.38	31.25	31.458	-0.24883	-0.027385	-5.3941E-05	NaN	53.404	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20741000			5554	1121	2971	2999							0.011328487179980584
DEKMIPGYPQ	10	Unmodified	_DEKMIPGYPQ_					0	0	0		ANO10|p.R285Gfs*49|1|0.15|ENSG00000160746|chr3:43577001-43577001|G/-|frameshift_variant;nc|ENSG00000160746|Q9NW15-2|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10	ANO10|p.R285Gfs*49|1|0.15|ENSG00000160746|chr3:43577001-43577001|G/-|frameshift_variant	ANO10|p.R285Gfs*49|1|0.15|ENSG00000160746|chr3:43577001-43577001|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	589.2637939453125	2	589.281531	1176.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.618	1	17.618	17.118	18.118	0								0	0	0	0.90475	1	6007	6007		14.838	2.3067	1				5555	144	2972	3000	5450	5450					-0.032702418452117854
DEKNFVVV	8	Unmodified	_DEKNFVVV_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B;ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MSMS	HCT116MG_D190212_S2	2	475.2528076171875	2	475.2531	948.491647	0.49624	0.00023584	-0.49718	-0.00023629	-0.0009415	-4.4745E-07	475.25293389785327	42.785	0.20773	42.715	42.585	42.793	-0.069984					5	3	2	0	0	0	0.094591	1	16219	16219		96.285	44.016	1	13001000			5556	2631	2973	3001	5451	5451					0.01534078660574778
DEKQQHIVY	9	Unmodified	_DEKQQHIVY_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-8|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	387.1960754394531	3	387.196256	1158.56694	0.035801	1.3862E-05	-0.034278	-1.3272E-05	0.0015227	5.896E-07	387.19612671036805	26.586	0.20802	26.437	26.359	26.567	-0.14924					6	3	2	0	0	0	0.26536	1	9573	9573		32.037	26.169	1	5010200			5557	3368	2974	3002	5452	5452					-0.006003638790161858
DEKQQHIVY	9	Unmodified	_DEKQQHIVY_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-8|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		3	387.196256	1158.56694	-0.068567	-2.6549E-05	0.20405	7.9008E-05	0.13548	5.2459E-05	387.19628616888053	26.475	0.26031	26.475	26.293	26.553	0	0.01195	8.6884E-05	NaN	32.037	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8016100			5558	3368	2974	3002							-0.006003638790161858
DEKQQHIVY	9	Unmodified	_DEKQQHIVY_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-8|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		3	387.196256	1158.56694	-0.045017	-1.743E-05	0.27222	0.0001054	0.2272	8.7971E-05	387.1964724064383	26.829	0.26126	26.477	26.345	26.606	-0.35254	0.013956	0.00016606	NaN	32.037	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42701000			5559	3368	2974	3002							-0.006003638790161858
DEKRDFRTY	9	Unmodified	_DEKRDFRTY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.R563H|1|0.3|ENSG00000166851|chr16:23689939-23689939|G/A|missense_variant	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	410.53509521484375	3	410.53516	1228.58365	-0.073207	-3.0054E-05	0.13854	5.6876E-05	0.065335	2.6822E-05	410.5351154587696	22.924	0.26039	22.924	22.793	23.054	0					9	4	3	0	0	0	0.010825	1	8155	8155		111.31	40.38	1	30565000			5560	4883	2975	3003	5453	5453					-0.021498629930420066
DEKRDFRTY	9	Unmodified	_DEKRDFRTY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.R563H|1|0.3|ENSG00000166851|chr16:23689939-23689939|G/A|missense_variant	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	615.2991943359375	2	615.299101	1228.58365	0.47207	0.00029046	-0.11448	-7.0442E-05	0.35758	0.00022002	615.2991206450639	22.924	0.20807	22.924	22.793	23.001	0					5	3	2	0	0	0	0.054316	1	8164	8164		69.338	32.264	1	12992000			5561	4883	2975	3003	5454	5454					-0.021498629930420066
DEKRDFRTY	9	Unmodified	_DEKRDFRTY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.R563H|1|0.3|ENSG00000166851|chr16:23689939-23689939|G/A|missense_variant	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	410.53497314453125	3	410.53516	1228.58365	-0.20076	-8.2417E-05	-0.052515	-2.1559E-05	-0.25327	-0.00010398	410.53508902119756	23.5	0.31137	23.117	22.988	23.299	-0.38324					13	5	3	0	0	0	0.058586	1	8383	8383		70.496	15.247	1	126020000			5562	4883	2975	3003	5455	5455					-0.021498629930420066
DEKRDFRTY	9	Unmodified	_DEKRDFRTY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.R563H|1|0.3|ENSG00000166851|chr16:23689939-23689939|G/A|missense_variant	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	615.2992553710938	2	615.299101	1228.58365	0.32313	0.00019882	0.066239	4.0757E-05	0.38937	0.00023958	615.2989847789837	23.5	0.36287	23.117	22.936	23.299	-0.38324					15	6	4	0	0	0	0.15109	1	8387	8387		51.415	22.921	1	76843000			5563	4883	2975	3003	5456	5456					-0.021498629930420066
DEKRDFRTY	9	Unmodified	_DEKRDFRTY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.R563H|1|0.3|ENSG00000166851|chr16:23689939-23689939|G/A|missense_variant	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	410.5352478027344	3	410.53516	1228.58365	-0.052691	-2.1632E-05	0.11119	4.5646E-05	0.058495	2.4014E-05	410.53512489322395	22.941	0.24812	22.922	22.751	22.999	-0.018869					8	4	2	0	0	0	0.049866	1	8079	8079		74.772	31.937	1	14379000			5564	4883	2975	3003	5457	5457					-0.021498629930420066
DEKRDFRTY	9	Unmodified	_DEKRDFRTY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.R563H|1|0.3|ENSG00000166851|chr16:23689939-23689939|G/A|missense_variant	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	615.2991333007812	2	615.299101	1228.58365	0.29517	0.00018162	0.10523	6.475E-05	0.40041	0.00024637	615.299135248698	22.941	0.20206	22.922	22.797	22.999	-0.018869					5	3	2	0	0	0	0.46065	1	8082	8082		24.882	2.2235	1	7196000			5565	4883	2975	3003	5458	5458					-0.021498629930420066
DEKRDFRTY	9	Unmodified	_DEKRDFRTY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.R563H|1|0.3|ENSG00000166851|chr16:23689939-23689939|G/A|missense_variant	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		3	410.53516	1228.58365	-0.061052	-2.5064E-05	0.059471	2.4415E-05	-0.0015803	-6.4876E-07	410.53510305120415	23.232	0.15812	22.985	22.905	23.063	-0.24775	-0.0020862	8.1869E-05	NaN	111.31	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2342700			5566	4883	2975	3003							-0.021498629930420066
DEKRFLVTV	9	Unmodified	_DEKRFLVTV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S1	1	553.813720703125	2	553.813856	1105.61316	0.42183	0.00023362	0.054367	3.0109E-05	0.4762	0.00026373	553.8139257716206	43.165	0.26123	43.165	43.003	43.264	0					8	4	2	0	0	0	0.085458	1	16317	16317		61.09	28.304	1	16028000			5567	1425	2976	3004	5459	5459					0.06457701023077789
DEKRFLVTV	9	Unmodified	_DEKRFLVTV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S2	2	553.814208984375	2	553.813856	1105.61316	-0.075685	-4.1915E-05	0.51599	0.00028576	0.4403	0.00024385	553.8140023314243	43.173	0.41117	43.1	42.84	43.252	-0.073376					21	7	3	0	0	0	0.029121	1	16333	16333		87.258	37.704	1	63027000			5568	1425	2976	3004	5460	5460					0.06457701023077789
DEKRFLVTV	9	Unmodified	_DEKRFLVTV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S3	3	553.813720703125	2	553.813856	1105.61316	0.47126	0.00026099	0.065382	3.6209E-05	0.53665	0.0002972	553.8136340332636	43.393	0.2961	43.088	42.945	43.241	-0.30472					12	5	3	0	0	0	0.060947	1	16210	16210		69.338	29.389	1	9576700			5569	1425	2976	3004	5461	5461					0.06457701023077789
DEKRFLVTV	9	Unmodified	_DEKRFLVTV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	HCT116MG_D190212_S4	4	553.6932983398438	2	553.813856	1105.61316	0.417	0.00023094	-0.026899	-1.4897E-05	0.3901	0.00021604	553.8135954752827	43.564	0.22108	43.189	43.046	43.267	-0.37433					7	4	2	0	0	0	0.11815	1	16008	16008		55.235	20.833	1	5332400			5570	1425	2976	3004	5462	5462					0.06457701023077789
DEKRVEEF	8	Unmodified	_DEKRVEEF_					0	0	0		ENSG00000138413|ENST00000345146|IDH1;ENST00000462386.5_1_2:209112975-209118617:-|nuORF	ENSG00000138413|ENST00000345146|IDH1	ENSG00000138413|ENST00000345146|IDH1	MSMS	HCT116MG_D190212_S1	1	526.2564697265625	2	526.256371	1050.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.527	1	27.527	27.027	28.027	0								0	0	0	0.48875	1	9992	9992		43.772	15.278	1				5571	3557	2977	3005	5463	5463					-0.025040281787141794
DEKRVEEF	8	Unmodified	_DEKRVEEF_					0	0	0		ENSG00000138413|ENST00000345146|IDH1;ENST00000462386.5_1_2:209112975-209118617:-|nuORF	ENSG00000138413|ENST00000345146|IDH1	ENSG00000138413|ENST00000345146|IDH1	MULTI-MSMS	HCT116MG_D190212_S2	2	526.2705688476562	2	526.256371	1050.49819	0.41609	0.00021897	0.16389	8.625E-05	0.57999	0.00030522	526.2564997546624	27.971	0.30884	27.629	27.449	27.758	-0.34201					9	5	2	0	0	0	0.1105	3	10194	10180;10194;10209		92.653	25.309	1	23580000			5572	3557	2977	3005	5464;5465;5466	5465					-0.025040281787141794
DEKRVEEF	8	Unmodified	_DEKRVEEF_					0	0	0		ENSG00000138413|ENST00000345146|IDH1;ENST00000462386.5_1_2:209112975-209118617:-|nuORF	ENSG00000138413|ENST00000345146|IDH1	ENSG00000138413|ENST00000345146|IDH1	MULTI-MSMS	HCT116MG_D190212_S3	3	526.2567749023438	2	526.256371	1050.49819	0.48861	0.00025713	0.61299	0.00032259	1.1016	0.00057972	526.2564827640426	27.816	0.31182	27.627	27.465	27.777	-0.18847					9	5	2	0	0	0	0.068735	1	10058	10058		103.35	25.204	1	6864800			5573	3557	2977	3005	5467	5467					-0.025040281787141794
DEKSIITY	8	Unmodified	_DEKSIITY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S1	1	484.74896240234375	2	484.75039	967.486227	-0.60626	-0.00029389	-0.39427	-0.00019112	-1.0005	-0.00048501	484.7500536153616	38.306	0.26065	38.306	38.175	38.436	0					7	4	2	0	0	0	0.17427	1	14342	14342		78.728	11.384	1	24366000			5574	5492;2459;1233;4450;5311	2978	3006	5468	5468					0.0011835507808655166
DEKSIITY	8	Unmodified	_DEKSIITY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	484.7505187988281	2	484.75039	967.486227	0.084273	4.0851E-05	0.12481	6.0503E-05	0.20908	0.00010135	484.75039638445736	38.338	0.42001	38.245	38.063	38.483	-0.09301					17	7	3	0	0	0	0.079196	1	14400	14400		99.799	17.909	1	70841000			5575	5492;2459;1233;4450;5311	2978	3006	5469	5469					0.0011835507808655166
DEKSIITY	8	Unmodified	_DEKSIITY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	484.7503662109375	2	484.75039	967.486227	0.043279	2.098E-05	0.085432	4.1413E-05	0.12871	6.2393E-05	484.75031081836727	38.624	0.41634	38.323	38.144	38.561	-0.30137					21	7	4	0	0	0	0.12671	1	14317	14317		88.954	17.032	1	27746000			5576	5492;2459;1233;4450;5311	2978	3006	5470	5470					0.0011835507808655166
DEKSIITY	8	Unmodified	_DEKSIITY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	968.494384765625	1	968.493504	967.486227	0.44515	0.00043113	0.49263	0.00047711	0.93778	0.00090823	968.4936703401645	38.59	0.36415	38.289	38.144	38.508	-0.30137					8	6	2	0	0	0	0.20346	1	14324	14324		72.968	1.8344	1	4860500			5577	5492;2459;1233;4450;5311	2978	3006	5471	5471					0.0011835507808655166
DEKSIITY	8	Unmodified	_DEKSIITY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;SPTBN2|p.P924Qfs*35|1|0.39|ENSG00000173898|chr11:66701629-66701629|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC;PLEC|p.E574Gfs*11|1|0.22|ENSG00000178209|chr8:143933305-143933306|-/C|frameshift_variant;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000178209|Q15149-7|PLEC;ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	HCT116MG_D190212_S4	4	484.7498779296875	2	484.75039	967.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.708	1	38.327	37.827	38.827	-0.38163								0	0	0	0.62663	1	14196	14196		36.044	1.9418	1				5578	5492;2459;1233;4450;5311	2978	3006	5472	5472					0.0011835507808655166
DEKTFLLLDSY	11	Unmodified	_DEKTFLLLDSY_					0	0	0			REV__nc|ENSG00000138835|P49796-9|RGS3	REV__nc|ENSG00000138835|P49796-9|RGS3	MSMS	HCT116MG_D190212_S1	1	672.3372192382812	2	672.340101	1342.66565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.38	1	19.38	18.88	19.88	0								0	0	0	0.94012	1	6717	6717		11.495	3.8858	1		+		5579	12245	2979	3007	5473	5473					0.008021945754080662
DEKTKDVPF	9	Unmodified	_DEKTKDVPF_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S2	2	539.7744750976562	2	539.774396	1077.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.803	1	32.591	32.091	33.091	-0.21135								0	0	0	0.03065	1	12149	12149		81.915	28.082	1				5580	3119	2980	3008	5474	5474					-0.001425710018565951
DEKTKDVPF	9	Unmodified	_DEKTKDVPF_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7900390625	2	539.774396	1077.53424	0.71897	0.00038808	0.16977	9.1639E-05	0.88874	0.00047972	539.7742838023851	32.871	0.20853	32.586	32.404	32.612	-0.28511					5	3	2	0	0	0	0.16285	1	12060	12060		45.74	18.111	1	3137500			5581	3119	2980	3008	5475	5475					-0.001425710018565951
DEKTKDVPF	9	Unmodified	_DEKTKDVPF_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S3	3	539.7748413085938	2	539.774396	1077.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.954	1	32.669	32.169	33.169	-0.28511								0	0	0	0.5054	1	12097	12097		28.495	9.2375	1				5582	3119	2980	3008	5476	5476					-0.001425710018565951
DEKTKDVPF	9	Unmodified	_DEKTKDVPF_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH	HCT116MG_D190212_S1	1		2	539.774396	1077.53424	0.45363	0.00024486	0.95415	0.00051503	1.4078	0.00075989	539.7745096217196	32.508	0.26082	32.508	32.43	32.691	0	-0.039042	0.0004265	NaN	45.74	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3298200			5583	3119	2980	3008							-0.001425710018565951
DEKYFISH	8	Unmodified	_DEKYFISH_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	HCT116MG_D190212_S1	1	519.7485961914062	2	519.748182	1037.48181	0.51026	0.00026521	0.2698	0.00014023	0.78006	0.00040543	519.7483671409293	30.624	0.26013	30.624	30.451	30.711	0					8	4	2	0	0	0	0.037913	1	11249	11249		137.42	95.329	1	4647900			5584	1033	2981	3009	5477	5477					-0.03543109344809636
DEKYFISH	8	Unmodified	_DEKYFISH_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MSMS	HCT116MG_D190212_S2	2	519.748046875	2	519.748182	1037.48181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.922	1	30.655	30.155	31.155	-0.26704								0	0	0	1.6846E-06	1	11387	11387		137.42	89.078	1				5585	1033	2981	3009	5478	5478					-0.03543109344809636
DEKYFISH	8	Unmodified	_DEKYFISH_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	HCT116MG_D190212_S3	3	519.748291015625	2	519.748182	1037.48181	0.18106	9.4106E-05	0.10399	5.4049E-05	0.28505	0.00014816	519.7481158107676	31.016	0.31308	30.755	30.604	30.917	-0.26071					8	5	2	0	0	0	0.027354	1	11332	11332		147.06	97.126	1	11240000			5586	1033	2981	3009	5479	5479					-0.03543109344809636
DEKYFISH	8	Unmodified	_DEKYFISH_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	HCT116MG_D190212_S4	4	519.7483520507812	2	519.748182	1037.48181	0.24606	0.00012789	0.024576	1.2773E-05	0.27064	0.00014066	519.7481173667611	31.16	0.2572	30.79	30.61	30.868	-0.37026					7	4	2	0	0	0	0.079387	1	11305	11305		99.755	69.119	1	5493800			5587	1033	2981	3009	5480	5480					-0.03543109344809636
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1013.4472045898438	1	1013.44622	1012.43894	1.04	0.001054	-0.57816	-0.00058594	0.46183	0.00046804	1013.4457099741421	30.893	0.36434	30.893	30.711	31.076	0					11	6	3	0	0	0	0.6854	1	11349	11349		24.674	0	1	13622000	+		5588	11771	2982	3010	5481	5481					-0.06677924192899809
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	507.22674560546875	2	507.226748	1012.43894	0.18701	9.4856E-05	-0.43799	-0.00022216	-0.25099	-0.00012731	507.2264389941673	31.237	0.78297	30.976	30.709	31.492	-0.26071					32	14	3	0	0	0	0.6854	1	11375	11375		24.674	0	1	24210000	+		5589	11771	2982	3010	5482	5482					-0.06677924192899809
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1013.44580078125	1	1013.44622	1012.43894	0.5355	0.0005427	-0.43176	-0.00043757	0.10374	0.00010513	1013.445595165174	31.209	0.52229	30.949	30.709	31.231	-0.26071					23	9	3	0	0	0	0.60268	1	11382	11382		32.117	0	1	29924000	+		5590	11771	2982	3010	5483	5483					-0.06677924192899809
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	507.2523498535156	2	507.226748	1012.43894	0.18701	9.4856E-05	-0.43799	-0.00022216	-0.25099	-0.00012731	507.2264389941673	31.237	0.78297	30.976	30.709	31.492	-0.26071					32	14	3	0	0	0	0.30703	1	11519	11519		18.135	0	1	24210000	+		5591	11771	2982	3010	5484	5484					-0.06677924192899809
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1013.4466552734375	1	1013.44622	1012.43894	0.54357	0.00055087	-0.55551	-0.00056298	-0.011948	-1.2109E-05	1013.4455510864207	31.216	0.51716	30.846	30.662	31.179	-0.37026					18	9	3	0	0	0	0.60268	1	11327	11327		32.117	0	1	8423900	+		5592	11771	2982	3010	5485	5485					-0.06677924192899809
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	507.2270202636719	2	507.226748	1012.43894	0.11535	5.851E-05	-0.46221	-0.00023444	-0.34686	-0.00017593	507.2264667722502	31.264	0.673	30.894	30.662	31.335	-0.37026					22	12	3	0	0	0	0.6854	1	11329	11329		24.674	0	1	11544000	+		5593	11771	2982	3010	5486	5486					-0.06677924192899809
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1013.44622	1012.43894	1.04	0.001054	-0.57816	-0.00058594	0.46183	0.00046804	1013.4457099741421	30.893	0.36434	30.893	30.711	31.076	0	0.014575	2.1834E-06	NaN	32.117	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13622000	+		5594	11771	2982	3010							-0.06677924192899809
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1013.44622	1012.43894	0.71273	0.00072231	-0.6984	-0.00070779	0.01433	1.4522E-05	1013.4454820936646	31.094	0.67188	30.827	30.612	31.284	-0.26704	-0.051435	-0.00011967	NaN	32.117	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152820000	+		5595	11771	2982	3010							-0.06677924192899809
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1013.44622	1012.43894	0.5355	0.0005427	-0.43176	-0.00043757	0.10374	0.00010513	1013.445595165174	31.209	0.52229	30.949	30.709	31.231	-0.26071	0.069861	0.00015055	NaN	32.117	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29924000	+		5596	11771	2982	3010							-0.06677924192899809
DELDFDLF	8	Unmodified	_DELDFDLF_					0	0	0			REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	REV__ENST00000460812.1_1_2:152226661-152230117:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	1013.44622	1012.43894	0.54357	0.00055087	-0.55551	-0.00056298	-0.011948	-1.2109E-05	1013.4455510864207	31.216	0.51716	30.846	30.662	31.179	-0.37026	-0.033002	2.5137E-05	NaN	32.117	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8423900	+		5597	11771	2982	3010							-0.06677924192899809
DELDLLSIEK	10	Unmodified	_DELDLLSIEK_					0	0	0			REV__ENST00000543938.5_1_15:83328314-83349061:-|nuORF	REV__ENST00000543938.5_1_15:83328314-83349061:-|nuORF	MSMS	HCT116MG_D190212_S3	3	587.8154907226562	2	587.813719	1173.61288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.48	1	54.184	53.684	54.684	-0.29587								0	0	0	0.91279	1	20644	20644		13.042	1.4022	1		+		5598	11202	2983	3011	5487	5487					0.033022365125589204
DELEIIEGMKF	11	Oxidation (M)	_DELEIIEGM(Oxidation (M))KF_		DELEIIEGM(1)KF		DELEIIEGM(51)KF	0	0	1		ENSG00000144381|ENST00000388968|HSPD1;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENST00000482167.1_1_2:198358046-198358962:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S1	1	670.8068237304688	2	670.326136	1338.63772	0.58258	0.00039052	0.60068	0.00040265	1.1833	0.00079317	670.3264034969384	51.194	0.1547	51.194	51.091	51.246	0					4	2	2	0	0	0	0.4398	1	19559	19559		51.488	25.467	1	6931300			5599	3862	2984	3012	5488	5488		87			-0.018054516763868378
DELEIKAYY	9	Unmodified	_DELEIKAYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	HCT116MG_D190212_S2	2	572.2825317382812	2	572.282054	1142.54956	0.5836	0.00033398	0.2333	0.00013351	0.8169	0.00046749	572.2820261750043	44.808	0.46878	44.723	44.535	45.004	-0.084797					16	8	3	0	0	0	0.0201	1	17045	17045		96.367	52.508	1	44926000			5600	2955	2985	3013	5489	5489					-0.016017042046769348
DELEIKAYY	9	Unmodified	_DELEIKAYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MATCH	HCT116MG_D190212_S1	1		2	572.282054	1142.54956	0.27244	0.00015591	0.16958	9.7049E-05	0.44203	0.00025296	572.2819164673816	44.738	0.15594	44.738	44.621	44.777	0	0.0074265	-6.1825E-05	NaN	96.367	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8821500			5601	2955	2985	3013							-0.016017042046769348
DELEIVLH	8	Unmodified	_DELEIVLH_					0	0	0			REV__ENST00000475972.1_1_3:136705553-136729062:+|nuORF	REV__ENST00000475972.1_1_3:136705553-136729062:+|nuORF	MSMS	HCT116MG_D190212_S1	1	484.2586364746094	2	484.258382	966.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.952	1	52.952	52.452	53.452	0								0	0	0	0.8837	1	20267	20267		13.508	0	1		+		5602	13488	2986	3014	5490	5490					0.017620613149915698
DELESTNRRY	10	Unmodified	_DELESTNRRY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	HCT116MG_D190212_S1	1	641.8052368164062	2	641.804748	1281.59494	0.68002	0.00043644	-0.5653	-0.00036281	0.11472	7.3627E-05	641.8041265113908	22.872	0.26025	22.872	22.741	23.001	0					7	4	2	0	0	0	0.2047	1	8127	8127		59.368	13.629	1	10297000			5603	1025	2987	3015	5491	5491					-0.03459085689564745
DELESTNRRY	10	Unmodified	_DELESTNRRY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MSMS	HCT116MG_D190212_S2	2	641.804931640625	2	641.804748	1281.59494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.411	1	23.026	22.526	23.526	-0.3852								0	0	0	0.2693	1	8342	8342		80.676	31.122	1				5604	1025	2987	3015	5492	5492					-0.03459085689564745
DELESTNRRY	10	Unmodified	_DELESTNRRY_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MATCH	HCT116MG_D190212_S3	3		2	641.804748	1281.59494	0.45841	0.00029421	-0.42749	-0.00027437	0.030921	1.9845E-05	641.8043665372617	22.941	0.15019	22.922	22.797	22.948	-0.018869	0.025035	6.91E-05	NaN	59.368	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4481400			5605	1025	2987	3015							-0.03459085689564745
DELEVIHL	8	Unmodified	_DELEVIHL_					0	0	0		TROVE2|p.K316Rfs*10|1|0.16|ENSG00000116747|chr1:193076641-193076641|A/-|frameshift_variant;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60	TROVE2|p.K316Rfs*10|1|0.16|ENSG00000116747|chr1:193076641-193076641|A/-|frameshift_variant	TROVE2|p.K316Rfs*10|1|0.16|ENSG00000116747|chr1:193076641-193076641|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	484.2586669921875	2	484.258382	966.502212	0.036681	1.7763E-05	0.083065	4.0225E-05	0.11975	5.7988E-05	484.25824319307355	53.129	0.51707	52.94	52.655	53.172	-0.18922					12	9	3	0	0	0	0.5791	1	20468	20468		34.187	7.8461	1	39097000			5606	2534	2988	3016	5493	5493					0.017620613150143072
DELEVIHL	8	Unmodified	_DELEVIHL_					0	0	0		TROVE2|p.K316Rfs*10|1|0.16|ENSG00000116747|chr1:193076641-193076641|A/-|frameshift_variant;nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60	TROVE2|p.K316Rfs*10|1|0.16|ENSG00000116747|chr1:193076641-193076641|A/-|frameshift_variant	TROVE2|p.K316Rfs*10|1|0.16|ENSG00000116747|chr1:193076641-193076641|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	484.2589111328125	2	484.258382	966.502212	0.35912	0.00017391	0.54074	0.00026186	0.89986	0.00043577	484.2586439622098	53.312	0.31386	53.009	52.826	53.139	-0.30305					8	5	2	0	0	0	0.40466	1	20205	20205		49.669	9.2203	1	3419600			5607	2534	2988	3016	5494	5494					0.017620613150143072
DELFYQVSMLV	11	Unmodified	_DELFYQVSMLV_					0	0	0			REV__ENSG00000163932|ENST00000330452|PRKCD	REV__ENSG00000163932|ENST00000330452|PRKCD	MSMS	HCT116MG_D190212_S4	4	448.5570068359375	3	448.556573	1342.64789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.262	1	24.003	23.503	24.503	-0.25816								0	0	0	0.95196	1	8539	8539		2.4348	1.1051	1		+		5608	12962	2989	3017	5495	5495					-0.009728439511263787
DELGQPFRH	9	Unmodified	_DELGQPFRH_					0	0	0			REV__ENST00000575203.5_1_16:68021411-68021937:-|nuORF	REV__ENST00000575203.5_1_16:68021411-68021937:-|nuORF	MSMS	HCT116MG_D190212_S2	2	549.7700805664062	2	549.76998	1097.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.872	1	26.52	26.02	27.02	-0.35254								0	0	0	0.64498	1	9740	9740		21.747	1.1657	1		+		5609	16600	2990	3018	5496	5496					-0.019454998476703622
DELHIVEA	8	Unmodified	_DELHIVEA_					0	0	0		ENST00000513394.1_1_8:57014234-57014760:-|nuORF;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	463.2349853515625	2	463.234907	924.455261	0.36692	0.00016997	-0.48561	-0.00022495	-0.11869	-5.4981E-05	463.23448520378537	39.199	0.26595	38.898	38.768	39.034	-0.30137					8	4	2	0	0	0	0.46267	1	14557	14557		44.407	14.182	1	7740200			5610	5625	2991	3019	5497	5497					-0.009987982361394643
DELHIVEA	8	Unmodified	_DELHIVEA_					0	0	0		ENST00000513394.1_1_8:57014234-57014760:-|nuORF;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	463.234907	924.455261	0.2227	0.00010316	-0.14956	-6.9282E-05	0.07314	3.3881E-05	463.23487318800875	38.953	0.20697	38.868	38.754	38.961	-0.084618	-0.015012	4.6062E-05	NaN	44.407	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18223000			5611	5625	2991	3019							-0.009987982361394643
DELIDFTEY	9	Unmodified	_DELIDFTEY_					0	0	0			REV__GLRX3|p.E277G|1|0.37|ENSG00000108010|chr10:130174872-130174872|A/G|missense_variant	REV__GLRX3|p.E277G|1|0.37|ENSG00000108010|chr10:130174872-130174872|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	572.7545166015625	2	572.755869	1143.49719	0.55036	0.00031522	-1.7208	-0.00098562	-1.1705	-0.0006704	572.7544509561851	40.601	0.25732	40.531	40.365	40.622	-0.069626					7	4	2	0	0	0	0.14972	1	15325	15325		48.346	6.2513	1	26456000	+		5612	11334	2992	3020	5498	5498					-0.06882287338271453
DELIFMSSPV	10	Unmodified	_DELIFMSSPV_					0	0	0			REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	569.7677001953125	2	569.278457	1136.54236	0.54761	0.00031174	-1.7775	-0.0010119	-1.2299	-0.00070017	569.2777451638927	41.846	0.16706	41.469	41.413	41.58	-0.37637					6	3	2	0	0	0	0.60826	1	15391	15391		27.629	11.782	1	1871100	+		5613	13000	2993	3021	5499	5499					-0.020447600767511176
DELIREVY	8	Unmodified	_DELIREVY_					0	0	0		ENST00000495790.1_1_10:32581422-32635732:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1;EPC1|p.V808Rfs*9|1|0.18|ENSG00000120616|chr10:32271569-32271570|AC/-|frameshift_variant;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1	ENST00000495790.1_1_10:32581422-32635732:-|nuORF	ENST00000495790.1_1_10:32581422-32635732:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	518.7691650390625	2	518.769114	1035.52368	0.14108	7.3188E-05	-0.025222	-1.3084E-05	0.11586	6.0104E-05	518.7690743916994	38.221	0.25893	38.128	37.96	38.219	-0.09301					7	4	2	0	0	0	0.66231	1	14387	14387		26.884	4.1474	1	10050000			5614	2703	2994	3022	5500	5500					0.007334463437246086
DELIVQHY	8	Unmodified	_DELIVQHY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MSMS	HCT116MG_D190212_S3	3	508.7566223144531	2	508.756007	1015.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.069	1	37.768	37.268	38.268	-0.30137								0	0	0	0.62663	1	14089	14089		36.044	14.298	1				5615	3148	2995	3023	5501	5501					-0.009668228277632807
DELIVQHY	8	Unmodified	_DELIVQHY_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	HCT116MG_D190212_S4	4	508.75653076171875	2	508.756007	1015.49746	-0.046658	-2.3738E-05	0.83586	0.00042525	0.7892	0.00040151	508.756449304146	38.046	0.201	37.664	37.611	37.812	-0.38282					8	5	2	0	0	0	0.46267	1	13943	13943		44.407	19.008	1	4379800			5616	3148	2995	3023	5502	5502					-0.009668228277632807
DELKKYREEAK	11	Unmodified	_DELKKYREEAK_					0	0	0			REV__NELFB|p.L128Tfs*7|1|0.42|ENSG00000188986|chr9:137256832-137256833|-/A|frameshift_variant	REV__NELFB|p.L128Tfs*7|1|0.42|ENSG00000188986|chr9:137256832-137256833|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	704.8732299804688	2	704.875173	1407.73579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.77	1	43.77	43.27	44.27	0								0	0	0	0.85129	1	16545	16545		26.268	14.027	1		+		5617	13983	2996	3024	5503	5503					0.04823492963873832
DELKLKQL	8	Unmodified	_DELKLKQL_					0	0	0		FER|p.K652R|1|0.05|ENSG00000151422|chr5:109100426-109100426|A/G|missense_variant;nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000151422|P16591-2|FER;ENSG00000151422|ENST00000281092|FER	FER|p.K652R|1|0.05|ENSG00000151422|chr5:109100426-109100426|A/G|missense_variant	FER|p.K652R|1|0.05|ENSG00000151422|chr5:109100426-109100426|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7975158691406	2	493.797675	985.580796	0.39398	0.00019455	-2.0538	-0.0010142	-1.6598	-0.00081961	493.79688730939574	36.64	0.25853	36.525	36.343	36.602	-0.11478					7	4	2	0	0	0	0.42581	1	13720	13720		47.749	9.5731	1	15392000			5618	4113	2997	3025	5504	5504					0.08742913620085346
DELKLLDVY	9	Unmodified	_DELKLLDVY_					0	0	0			REV__NAA15|p.N614Mfs*22|1|0.12|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant	REV__NAA15|p.N614Mfs*22|1|0.12|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	556.7437744140625	2	554.300247	1106.58594	0.56636	0.00031394	-0.13552	-7.5117E-05	0.43085	0.00023882	554.3000869917157	53.002	0.4183	52.699	52.512	52.931	-0.30305					23	7	5	0	0	0	0.72399	1	20005	20005		3.5965	3.5965	1	61442000	+		5619	12982	2998	3026	5505	5505					0.036911726920379806
DELKTFRL	8	Unmodified	_DELKTFRL_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-SECPEP	HCT116MG_D190212_S1	1	511.2693176269531	2	511.287474	1020.5604	0.23556	0.00012044	-1.0125	-0.00051766	-0.77692	-0.00039723	511.2868600954289	44.242	0.21516	44.242	44.088	44.304	0					6	3	2	0	0	0	0.26171	1	16750	16750		36.127	1.7253	1	12462000			5620	1766	2999	3027	5506	5506					0.050937429602981865
DELKVLKI	8	Unmodified	_DELKVLKI_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	HCT116MG_D190212_S2	2	479.30303955078125	2	479.302593	956.590633	0.041473	1.9878E-05	0.64219	0.00030781	0.68367	0.00032768	479.30286860529105	44.071	0.25616	43.993	43.865	44.121	-0.078373					6	4	2	0	0	0	0.061818	1	16757	16757		110.67	24.343	1	17087000			5621	1138	3000	3028	5507	5507					0.11060101625469088
DELLQKGY	8	Unmodified	_DELLQKGY_					0	0	0		ENST00000495368.1_1_10:12184516-12209761:+|nuORF;SEC61A2|p.A387Kfs*3|1|0.04|ENSG00000065665|chr10:12161111-12161114|CAGC/-|frameshift_variant;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2503967285156	2	483.250557	964.486562	0.20658	9.9832E-05	-0.13126	-6.3434E-05	0.07532	3.6398E-05	483.250479748096	34.296	0.20804	34.001	33.871	34.079	-0.29419					5	3	2	0	0	0	0.51336	1	12631	12631		39.957	9.7325	1	3124400			5622	1097	3001	3029	5508	5508					0.002897747979545784
DELNHASL	8	Unmodified	_DELNHASL_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MSMS	HCT116MG_D190212_S2	2	449.71697998046875	2	449.716882	897.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.457	1	31.208	30.708	31.708	-0.24883								0	0	0	0.71912	1	11605	11605		29.082	0	1				5623	1719	3002	3030	5509	5509					-0.033602554129970486
DELPGACLTC	10	Unmodified	_DELPGACLTC_					0	0	0			REV__nc|ENSG00000204610|Q9C019-2|TRIM15	REV__nc|ENSG00000204610|Q9C019-2|TRIM15	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2204284667969	2	511.220085	1020.42562	0.52669	0.00026925	-0.062967	-3.219E-05	0.46372	0.00023706	511.22002061952986	34.63	0.30941	34.472	34.296	34.606	-0.15834					12	5	3	0	0	0	0.60826	1	12882	12882		27.629	0.74515	1	49569000	+		5624	14203	3003	3031	5510	5510					-0.0837782156816047
DELPGACLTC	10	Unmodified	_DELPGACLTC_					0	0	0			REV__nc|ENSG00000204610|Q9C019-2|TRIM15	REV__nc|ENSG00000204610|Q9C019-2|TRIM15	MULTI-MSMS	HCT116MG_D190212_S3	3	511.2205810546875	2	511.220085	1020.42562	-0.0052337	-2.6756E-06	-0.36711	-0.00018768	-0.37235	-0.00019035	511.22018599957323	34.815	0.51923	34.518	34.284	34.803	-0.29707					24	9	4	0	0	0	0.56527	1	12827	12827		30.637	6.616	1	23310000	+		5625	14203	3003	3031	5511	5511					-0.0837782156816047
DELPGACLTC	10	Unmodified	_DELPGACLTC_					0	0	0			REV__nc|ENSG00000204610|Q9C019-2|TRIM15	REV__nc|ENSG00000204610|Q9C019-2|TRIM15	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	511.220085	1020.42562	0.52669	0.00026925	-0.062967	-3.219E-05	0.46372	0.00023706	511.22002061952986	34.63	0.30941	34.472	34.296	34.606	-0.15834	-0.023231	1.848E-05	NaN	30.637	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49569000	+		5626	14203	3003	3031							-0.0837782156816047
DELPGACLTC	10	Unmodified	_DELPGACLTC_					0	0	0			REV__nc|ENSG00000204610|Q9C019-2|TRIM15	REV__nc|ENSG00000204610|Q9C019-2|TRIM15	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	511.220085	1020.42562	-0.0052337	-2.6756E-06	-0.36711	-0.00018768	-0.37235	-0.00019035	511.22018599957323	34.815	0.51923	34.518	34.284	34.803	-0.29707	0.023231	-0.00029249	NaN	30.637	24	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23310000	+		5627	14203	3003	3031							-0.0837782156816047
DELPKFHQY	9	Unmodified	_DELPKFHQY_					0	0	0		nc|ENSG00000107554|Q6XZF7-2|DNMBP;ENSG00000107554|ENST00000324109|DNMBP;DNMBP|p.A1175T|1|0.36|ENSG00000107554|chr10:99886395-99886395|C/T|missense_variant;DNMBP|p.S1398Lfs*25|1|0.16|ENSG00000107554|chr10:99880168-99880168|C/-|frameshift_variant	nc|ENSG00000107554|Q6XZF7-2|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	MULTI-MSMS	HCT116MG_D190212_S2	2	588.7882080078125	2	588.787838	1175.56112	0.60884	0.00035848	-0.18154	-0.00010689	0.4273	0.00025159	588.7879193370145	35.153	0.41449	34.994	34.657	35.072	-0.15834					11	7	2	0	0	0	0.01405	2	13112	13010;13112		103.35	51.724	1	21723000			5628	2116	3004	3032	5512;5513	5513					-0.019634623906540583
DELQAILNY	9	Unmodified	_DELQAILNY_					0	0	0		LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	540.31982421875	2	539.774396	1077.53424	0.52105	0.00028125	0.30314	0.00016363	0.82419	0.00044487	539.7743515626539	55.939	0.20422	55.939	55.811	56.015	0					5	3	2	0	0	0	0.23771	1	21477	21477		20.454	9.6297	1	14064000			5629	6244	3005	3033	5514	5514					-0.001425710018565951
DELQAILNY	9	Unmodified	_DELQAILNY_					0	0	0		LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	540.2942504882812	2	539.774396	1077.53424	0.57994	0.00031304	0.019068	1.0293E-05	0.59901	0.00032333	539.7744507125698	56.106	0.2047	55.924	55.796	56.001	-0.18261					6	3	2	0	0	0	0.012496	2	21658	21658;21666		107.19	57.633	1	54870000			5630	6244	3005	3033	5515;5516	5515					-0.001425710018565951
DELQAILNY	9	Unmodified	_DELQAILNY_					0	0	0		LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7748413085938	2	539.774396	1077.53424	0.5692	0.00030724	-0.15944	-8.6062E-05	0.40976	0.00022118	539.7742851379878	56.25	0.20903	55.966	55.836	56.045	-0.28367					7	3	3	0	0	0	0.49616	1	21365	21365		17.113	7.039	1	2709000			5631	6244	3005	3033	5517	5517					-0.001425710018565951
DELQLVQY	8	Unmodified	_DELQLVQY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	504.2557067871094	2	504.25584	1006.49713	0.50021	0.00025223	-0.19744	-9.9558E-05	0.30277	0.00015267	504.2556562311873	49.068	0.52787	48.752	48.499	49.027	-0.31596					18	9	3	0	0	0	0.064348	1	18449	18449		108	36.863	1	24356000			5632	1439	3006	3034	5518	5518					-0.005862425476038879
DELQLVQY	8	Unmodified	_DELQLVQY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1007.5042114257812	1	1007.5044	1006.49713	0.75006	0.00075569	-0.28012	-0.00028222	0.46995	0.00047347	1007.504138567133	49.052	0.42242	48.736	48.552	48.975	-0.31596					16	7	3	0	0	0	0.04112	1	18456	18456		133.7	31.98	1	16414000			5633	1439	3006	3034	5519	5519					-0.005862425476038879
DELQLVQY	8	Unmodified	_DELQLVQY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1007.5045776367188	1	1007.5044	1006.49713	0.43655	0.00043983	-0.0015097	-1.521E-06	0.43504	0.00043831	1007.5044704834647	49.102	0.30143	48.737	48.565	48.866	-0.365					8	5	2	0	0	0	0.09113	1	18204	18204		97.075	11.718	1	8333100			5634	1439	3006	3034	5520	5520					-0.005862425476038879
DELQLVQY	8	Unmodified	_DELQLVQY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant;FAT1|p.K1225Nfs*9|1|0.03|ENSG00000083857|chr4:186636885-186636885|G/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.23|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	504.2559814453125	2	504.25584	1006.49713	0.10107	5.0968E-05	0.063274	3.1906E-05	0.16435	8.2874E-05	504.25596084839935	49.106	0.30143	48.741	48.565	48.866	-0.365					10	5	3	0	0	0	0.15965	1	18206	18206		81.613	24.142	1	9745900			5635	1439	3006	3034	5521	5521					-0.005862425476038879
DELQQPLEL	9	Unmodified	_DELQQPLEL_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	HCT116MG_D190212_S3	3	542.779052734375	2	542.779679	1083.5448	0.43905	0.00023831	-0.68609	-0.0003724	-0.24704	-0.00013409	542.7791471495372	51.72	0.36641	51.41	51.227	51.594	-0.30927					9	6	2	0	0	0	0.066823	1	19563	19563		66.457	35.82	1	3771700			5636	5142	3007	3035	5522	5522					0.0063741165256487875
DELQSVISH	9	Unmodified	_DELQSVISH_					0	0	0		nc|ENSG00000114520|O95219-2|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4	nc|ENSG00000114520|O95219-2|SNX4	nc|ENSG00000114520|O95219-2|SNX4	MSMS	HCT116MG_D190212_S2	2	514.25634765625	2	514.256371	1026.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.996	1	36.881	36.381	37.381	-0.11478								0	0	0	0.403	1	13853	13853		33.445	11.698	1				5637	2424	3008	3036	5523	5523					-0.014000281787048152
DELRAVMF	8	Unmodified	_DELRAVMF_					0	0	0		MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3	MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	490.7469482421875	2	490.747127	979.479702	0.097793	4.7991E-05	1.3108	0.00064329	1.4086	0.00069128	490.7478185831127	51.563	0.52454	51.251	50.857	51.382	-0.31166					12	9	2	0	0	0	0.40176	1	19484	19484		49.933	28.186	1	3809300			5638	3042	3009	3037	5524	5524					-0.010858613542609419
DELRVNQL	8	Unmodified	_DELRVNQL_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7666320800781	2	493.766906	985.519259	0.2568	0.0001268	-0.21116	-0.00010426	0.04564	2.2535E-05	493.76672700305807	38.444	0.37032	38.351	38.219	38.589	-0.092537					10	6	3	0	0	0	0.045718	1	14455	14455		128.37	28.566	1	37299000			5639	6590	3010	3038	5525	5525					0.025919819208070294
DELRVNQL	8	Unmodified	_DELRVNQL_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	HCT116MG_D190212_S3	3	493.7669372558594	2	493.766906	985.519259	0.084316	4.1632E-05	0.19035	9.3986E-05	0.27466	0.00013562	493.7668361158626	38.68	0.41668	38.378	38.196	38.613	-0.30137					11	7	2	0	0	0	0.057078	1	14342	14342		115.69	15.893	1	13871000			5640	6590	3010	3038	5526	5526					0.025919819208070294
DELRVNQL	8	Unmodified	_DELRVNQL_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	493.766906	985.519259	0.15454	7.6308E-05	0.47954	0.00023678	0.63408	0.00031309	493.76679688025575	38.743	0.30688	38.362	38.232	38.539	-0.38163	-0.0018962	0.00044063	NaN	128.37	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4797800			5641	6590	3010	3038							0.025919819208070294
DELSLLDPLPR	11	Unmodified	_DELSLLDPLPR_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MSMS	HCT116MG_D190212_S1	1	634.3506469726562	2	634.34826	1266.68197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.469	1	24.469	23.969	24.969	0								0	0	0	0.94538	1	8761	8761		8.7454	1.1365	1				5642	851	3011	3039	5527	5527					0.059293205321409914
DELTVARL	8	Unmodified	_DELTVARL_					0	0	0			REV__ENSG00000197599|ENST00000389176|CCDC154	REV__ENSG00000197599|ENST00000389176|CCDC154	MSMS	HCT116MG_D190212_S2	2	458.758544921875	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.634	1	47.501	47.001	48.001	-0.13281								0	0	0	0.52323	1	18176	18176		41.84	1.8899	1		+		5643	14081	3012	3040	5528	5528					0.04141481034844219
DEMFHPFEWD	10	Unmodified	_DEMFHPFEWD_					0	0	0			REV__TMEM117|p.G265E|1|0.1|ENSG00000139173|chr12:44376620-44376620|G/A|missense_variant	REV__TMEM117|p.G265E|1|0.1|ENSG00000139173|chr12:44376620-44376620|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	676.7671508789062	2	676.766245	1351.51794	0.7207	0.00048774	0.753	0.00050961	1.4737	0.00099735	676.7666778839053	25.64	0.20906	25.64	25.509	25.718	0					8	3	3	0	0	0	0.77749	1	9258	9258		13.906	5.1606	1	8908200	+		5644	17643	3013	3041	5529	5529					-0.14376020230270115
DEMKVLVL	8	Unmodified	_DEMKVLVL_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7674560546875	2	473.767529	945.520504	0.18293	8.6668E-05	-0.18441	-8.7368E-05	-0.0014768	-6.9968E-07	473.76722131146516	52.948	0.30944	52.759	52.604	52.913	-0.18922					8	5	2	0	0	0	0.42581	1	20374	20374		47.749	11.704	1	7274700			5645	2459	3014	3042	5530	5530					0.04556479965344806
DEMKVLVL	8	Unmodified	_DEMKVLVL_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MSMS	HCT116MG_D190212_S3	3	473.7674560546875	2	473.767529	945.520504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.277	1	52.974	52.474	53.474	-0.30305								0	0	0	0.37884	1	20160	20160		49.933	9.4844	1				5646	2459	3014	3042	5531	5531					0.04556479965344806
DEMKVLVL	8	Unmodified	_DEMKVLVL_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MSMS	HCT116MG_D190212_S3	3	473.7679443359375	2	473.767529	945.520504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.317	1	53.014	52.514	53.514	-0.30305								0	0	0	0.73727	1	20176	20176		27.629	2.9549	1				5647	2459	3014	3042	5532	5532					0.04556479965344806
DEMLSRGF	8	Unmodified	_DEMLSRGF_					0	0	0		ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MSMS	HCT116MG_D190212_S1	1	477.72088623046875	2	477.72111	953.427666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.884	1	40.884	40.384	41.384	0								0	0	0	2.5311E-06	1	15379	15379		131.27	76.494	1				5648	4307;4501;8098	3015	3043	5533	5533					-0.05091024768023544
DEMLSRGF	8	Unmodified	_DEMLSRGF_					0	0	0		ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	477.7210388183594	2	477.72111	953.427666	0.32481	0.00015517	-0.035202	-1.6817E-05	0.28961	0.00013835	477.72101901817047	40.876	0.25937	40.806	40.673	40.933	-0.069626					10	4	3	0	0	0	0.02101	1	15431	15431		152.41	77.989	1	50434000			5649	4307;4501;8098	3015	3043	5534	5534					-0.05091024768023544
DEMLSRGF	8	Unmodified	_DEMLSRGF_					0	0	0		ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	954.435791015625	1	954.434943	953.427666	0.73415	0.00070069	0.19717	0.00018819	0.93132	0.00088888	954.4351523672977	40.884	0.156	40.815	40.725	40.881	-0.069626					4	2	2	0	0	0	0.051049	1	15456	15456		122.18	40.566	1	15407000			5650	4307;4501;8098	3015	3043	5535	5535					-0.05091024768023544
DEMLSRGF	8	Unmodified	_DEMLSRGF_					0	0	0		ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	477.72113037109375	2	477.72111	953.427666	0.30923	0.00014773	-0.09379	-4.4805E-05	0.21544	0.00010292	477.721041542282	41.098	0.46965	40.796	40.527	40.997	-0.30185					12	8	2	0	0	0	0.036435	1	15267	15267		139.14	84.365	1	27848000			5651	4307;4501;8098	3015	3043	5536	5536					-0.05091024768023544
DEMLSRGF	8	Unmodified	_DEMLSRGF_					0	0	0		ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	954.4359130859375	1	954.434943	953.427666	0.86056	0.00082135	-0.016709	-1.5948E-05	0.84385	0.0008054	954.4349492876053	41.116	0.31362	40.814	40.632	40.945	-0.30185					8	5	2	0	0	0	0.12475	1	15313	15313		89.401	45.542	1	5553600			5652	4307;4501;8098	3015	3043	5537	5537					-0.05091024768023544
DEMLSRGF	8	Unmodified	_DEMLSRGF_					0	0	0		ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000466362.1_1_3:186502860-186504086:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;EIF4A2|p.Q209Lfs*23|1|0.03|ENSG00000156976|chr3:186786269-186786270|-/ACTGTCATTTCTAGATCTAC|frameshift_variant;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	477.7210388183594	2	477.72111	953.427666	0.48347	0.00023096	-0.44984	-0.0002149	0.033625	1.6064E-05	477.7209387300895	41.214	0.2142	40.836	40.716	40.93	-0.37732					7	4	2	0	0	0	0.068362	1	15145	15145		103.75	61.654	1	10186000			5653	4307;4501;8098	3015	3043	5538	5538					-0.05091024768023544
DEMLTHDI	8	Unmodified	_DEMLTHDI_					0	0	0		ENST00000540884.1_1_19:48232905-48244686:+|nuORF;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENST00000540884.1_1_19:48232905-48244686:+|nuORF	MSMS	HCT116MG_D190212_S4	4	487.21771240234375	2	487.2184	972.422247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.007	1	39.628	39.128	40.128	-0.37936								0	0	0	0.65638	1	14664	14664		34.102	3.4659	1				5654	951	3016	3044	5539	5539					-0.06506748350511771
DEMMKSYVA	9	Unmodified	_DEMMKSYVA_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S3	3	537.2357177734375	2	537.235735	1072.45692	0.27171	0.00014597	-0.34782	-0.00018686	-0.076107	-4.0887E-05	537.2354718474309	34.802	0.26027	34.505	34.388	34.648	-0.29707					7	4	2	0	0	0	0.14376	1	12853	12853		49.527	30.27	1	6366000			5655	6591	3017	3045	5540	5540					-0.07641248534059741
DEMMKSYVA	9	Unmodified	_DEMMKSYVA_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	HCT116MG_D190212_S2	2		2	537.235735	1072.45692	0.72527	0.00038964	0.1279	6.8712E-05	0.85317	0.00045835	537.2357050575703	34.583	0.20552	34.424	34.296	34.502	-0.15834	-0.040331	0.00027794	NaN	49.527	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8738900			5656	6591	3017	3045							-0.07641248534059741
DEMNVKVL	8	Unmodified	_DEMNVKVL_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	474.2469177246094	2	474.24696	946.479368	0.15302	7.2568E-05	-0.026438	-1.2538E-05	0.12658	6.0029E-05	474.24681637948504	41.082	0.4141	41.014	40.675	41.089	-0.068199					13	7	3	0	0	0	0.038852	1	15521	15521		136.33	91.926	1	70198000			5657	1587	3018	3046	5541	5541					0.003987189258737089
DEMNVKVL	8	Unmodified	_DEMNVKVL_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	474.24761962890625	2	474.24696	946.479368	0.1497	7.0997E-05	-0.13932	-6.6071E-05	0.010386	4.9253E-06	474.2467502781001	41.325	0.31247	41.023	40.788	41.1	-0.30185					9	5	2	0	0	0	0.0044015	1	15367	15367		181.33	117.76	1	25298000			5658	1587	3018	3046	5542	5542					0.003987189258737089
DEMNVKVL	8	Unmodified	_DEMNVKVL_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	474.24696	946.479368	0.14868	7.0512E-05	-0.062139	-2.9469E-05	0.086544	4.1043E-05	474.2468204256475	41.091	0.1473	41.091	40.986	41.133	0	0.048656	2.9708E-05	NaN	181.33	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7991200			5659	1587	3018	3046							0.003987189258737089
DEMNVKVL	8	Oxidation (M)	_DEM(Oxidation (M))NVKVL_		DEM(1)NVKVL		DEM(42)NVKVL	0	0	1		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	482.75872802734375	2	482.244418	962.474282	0.44958	0.00021681	-0.57718	-0.00027834	-0.1276	-6.1537E-05	482.243927079939	32.909	0.26034	32.624	32.404	32.664	-0.28511					7	4	2	0	0	0	0.49192	1	12083	12083		41.84	11.615	1	4279400			5660	1587	3018	3047	5543	5543		27			-0.00845584936735122
DEMNVKVL	8	Oxidation (M)	_DEM(Oxidation (M))NVKVL_		DEM(1)NVKVL		DEM(75)NVKVL	0	0	1		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MSMS	HCT116MG_D190212_S3	3	482.244140625	2	482.244418	962.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.949	1	32.664	32.164	33.164	-0.28511								0	0	0	0.14782	1	12095	12095		74.929	28.008	1				5661	1587	3018	3047	5544	5544		27			-0.00845584936735122
DEMPVYINL	9	Unmodified	_DEMPVYINL_					0	0	0			REV__nc|ENSG00000165246|Q8NFZ3|NLGN4Y	REV__nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-SECPEP	HCT116MG_D190212_S4	4	547.516357421875	2	547.26535	1092.51615	0.38944	0.00021313	-1	-0.00054727	-0.61058	-0.00033415	547.7663025364458	49.611	0.69079	49.249	48.714	49.404	-0.36213					21	13	2	0	0	0	0.21838	1	18280	18280		26.884	25.554	1	6149800	+		5662	13044	3019	3048	5545	5545					-0.026410292482296427
DEMTSLSEY	9	Unmodified	_DEMTSLSEY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7188720703125	2	537.71843	1073.42231	0.53964	0.00029017	-0.15313	-8.234E-05	0.38651	0.00020783	537.7182402110677	42.838	0.20798	42.534	42.404	42.612	-0.30472					6	3	2	0	0	0	0.51829	1	15994	15994		15.847	4.2069	1	7019400			5663	1617	3020	3049	5546	5546					-0.1114679314116529
DEMTSLSEY	9	Unmodified	_DEMTSLSEY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	1074.430419921875	1	1074.42958	1073.42231	0.5476	0.00058835	-0.057193	-6.145E-05	0.4904	0.0005269	1074.4292895736835	42.87	0.20798	42.565	42.404	42.612	-0.30472					6	3	2	0	0	0	0.065014	1	15995	15995		67.344	38.857	1	6775100			5664	1617	3020	3049	5547	5547					-0.1114679314116529
DEMTSLSEY	9	Unmodified	_DEMTSLSEY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S4	4	1074.4302978515625	1	1074.42958	1073.42231	0.56171	0.00060351	0.68109	0.00073178	1.2428	0.0013353	1074.4301278663397	42.885	0.19509	42.51	42.405	42.6	-0.37493					5	3	2	0	0	0	0.1037	1	15788	15788		57.471	34.323	1	3699200			5665	1617	3020	3049	5548	5548					-0.1114679314116529
DEMTSLSEY	9	Unmodified	_DEMTSLSEY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	HCT116MG_D190212_S4	4	537.7955932617188	2	537.71843	1073.42231	0.42844	0.00023038	-0.1123	-6.0385E-05	0.31614	0.00017	537.7182288744267	42.878	0.19509	42.503	42.405	42.6	-0.37493					5	3	2	0	0	0	0.24622	1	15797	15797		16.942	9.0321	1	2119200			5666	1617	3020	3049	5549	5549					-0.1114679314116529
DEMTSLSEY	9	Oxidation (M)	_DEM(Oxidation (M))TSLSEY_		DEM(1)TSLSEY		DEM(42)TSLSEY	0	0	1		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MSMS	HCT116MG_D190212_S4	4	545.715576171875	2	545.715887	1089.41722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.671	1	34.286	33.786	34.786	-0.38558								0	0	0	0.27276	1	12669	12669		42.095	18.946	1				5667	1617	3020	3050	5550	5550		28			-0.12391097003796858
DENEHQLSL	9	Unmodified	_DENEHQLSL_					0	0	0		ENST00000513394.1_1_8:57014234-57014760:-|nuORF;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000436123.1_1_3:24138699-24138891:-|nuORF;ENST00000523339.1_1_5:170814874-170817152:+|nuORF	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7490234375	2	542.74891	1083.48327	0.50123	0.00027204	0.080687	4.3793E-05	0.58191	0.00031583	542.749002497154	36.849	0.30916	36.734	36.55	36.859	-0.11479					13	5	3	0	0	0	0.01386	1	13801	13801		103.82	47.647	1	28080000			5668	5625	3021	3051	5551	5551					-0.055135200467020695
DENEIEKL	8	Unmodified	_DENEIEKL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MSMS	HCT116MG_D190212_S1	1	495.2417907714844	2	495.242929	988.471305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.589	1	36.589	36.089	37.089	0								0	0	0	0.85589	1	13644	13644		18.135	0	1				5669	1270	3022	3052	5552	5552					-0.023391367898966564
DENELKEFF	9	Unmodified	_DENELKEFF_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MSMS	HCT116MG_D190212_S2	2	585.7698364257812	2	585.769311	1169.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.594	1	54.405	53.905	54.905	-0.1894								0	0	0	0.040051	1	21023	21023		73.196	25.602	1				5670	3583	3023	3053	5553	5553					-0.05391178727086299
DENELKEFF	9	Unmodified	_DENELKEFF_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MSMS	HCT116MG_D190212_S3	3	585.7698364257812	2	585.769311	1169.52407	0.44887	0.00026294	0.41546	0.00024336	0.86433	0.0005063	585.7695366103301	54.617	0.20914	54.321	54.19	54.4	-0.29587					8	3	3	0	0	0	0.22528	1	20726	20726		38.615	10.986	1	6823100			5671	3583	3023	3053	5554	5554					-0.05391178727086299
DENELKEFF	9	Unmodified	_DENELKEFF_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	585.769311	1169.52407	0.54508	0.00031929	0.26779	0.00015686	0.81287	0.00047616	585.7693368839837	54.518	0.2035	54.329	54.201	54.405	-0.1894	0.0037221	-0.0001589	NaN	38.615	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37560000			5672	3583	3023	3053							-0.05391178727086299
DENENKIEF	9	Unmodified	_DENENKIEF_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-3|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-SECPEP	HCT116MG_D190212_S2	2	569.2571411132812	2	569.256568	1136.49858	0.59161	0.00033678	0.076775	4.3705E-05	0.66838	0.00038048	569.2564100156923	39.122	0.25794	39.045	38.916	39.174	-0.077835					7	4	2	0	0	0	0.13631	1	14748	14748		49.527	18.259	1	16840000			5673	3426	3024	3054	5555	5555					-0.06420653249506358
DENENKIEF	9	Unmodified	_DENENKIEF_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-3|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	HCT116MG_D190212_S3	3	569.2567749023438	2	569.256568	1136.49858	0.45408	0.00025849	-0.19145	-0.00010898	0.26263	0.0001495	569.2564727968314	39.335	0.2676	39.034	38.872	39.14	-0.30137					7	4	2	0	0	0	0.0039465	1	14611	14611		151.48	48.126	1	7095900			5674	3426	3024	3054	5556	5556					-0.06420653249506358
DENEVRTLF	9	Unmodified	_DENEVRTLF_					0	0	0		ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000467388.1_1_2:216203501-216211697:+|nuORF;ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	561.7755737304688	2	561.774928	1121.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.822	1	47.69	47.19	48.19	-0.13281								0	0	0	0.60249	1	18252	18252		23.801	6.6882	1				5675	218	3025	3055	5557	5557					-0.02060356632955518
DENEVRTLF	9	Unmodified	_DENEVRTLF_					0	0	0		ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000467388.1_1_2:216203501-216211697:+|nuORF;ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	561.77490234375	2	561.774928	1121.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.042	1	47.726	47.226	48.226	-0.31596								0	0	0	0.26976	1	18058	18058		42.312	18.292	1				5676	218	3025	3055	5558	5558					-0.02060356632955518
DENFHNYEF	9	Unmodified	_DENFHNYEF_					0	0	0		TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant;TBC1D32|p.F1022Sfs*5|1|0.3|ENSG00000146350|chr6:121113166-121113166|A/-|frameshift_variant;ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;TBC1D32|p.K717Nfs*29|1|0.1|ENSG00000146350|chr6:121242207-121242207|T/-|frameshift_variant;nc|ENSG00000146350|Q96NH3-5|TBC1D32	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	607.3292236328125	2	607.741085	1213.46762	0.88305	0.00053666	-0.7993	-0.00048577	0.083744	5.0895E-05	607.7407587655674	43.625	0.20527	43.55	43.405	43.611	-0.074951					5	3	2	0	0	0	0.22961	1	16554	16554		24.991	22.931	1	5907000			5677	3944	3026	3056	5559	5559					-0.13057806563756458
DENFILKH	8	Unmodified	_DENFILKH_					0	0	0		NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENSG00000114857|ENST00000232978|NKTR;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENST00000482751.5_1_1:40208803-40219024:+|nuORF;PPIE|p.T229M|1|0.16|ENSG00000084072|chr1:39749080-39749080|C/T|missense_variant;ENST00000470213.5_1_1:40214588-40218763:+|nuORF;ENST00000441944.2_1_9:7597894-7598236:+|nuORF;ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000468735.6_1_3:42662892-42668896:+|nuORF;ENST00000567565.3_1_15:76039287-76039500:+|nuORF;ENST00000466553.1_1_3:42662892-42672698:+|nuORF;ENST00000414193.2_1_X:100698832-100699039:-|nuORF;ENST00000452411.1_1_7:98083525-98083918:-|nuORF;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENSG00000196262|ENST00000468812|PPIA;ENST00000527147.1_1_11:100537243-100537690:+|nuORF	NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF	NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2646789550781	2	508.263999	1014.51345	0.49924	0.00025375	0.011825	6.0102E-06	0.51107	0.00025976	508.26395766270167	34.325	1.4438	34.15	33.76	35.204	-0.17512					47	27	2	0	0	0	0.068735	1	12756	12756		103.35	63.396	1	265940000			5678	9696;6056;8593	3027	3057	5560	5560					0.006768834091417375
DENFILKH	8	Unmodified	_DENFILKH_					0	0	0		NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENSG00000114857|ENST00000232978|NKTR;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENST00000482751.5_1_1:40208803-40219024:+|nuORF;PPIE|p.T229M|1|0.16|ENSG00000084072|chr1:39749080-39749080|C/T|missense_variant;ENST00000470213.5_1_1:40214588-40218763:+|nuORF;ENST00000441944.2_1_9:7597894-7598236:+|nuORF;ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000577627.1_1_18:5002795-5003119:-|nuORF;ENST00000468735.6_1_3:42662892-42668896:+|nuORF;ENST00000567565.3_1_15:76039287-76039500:+|nuORF;ENST00000466553.1_1_3:42662892-42672698:+|nuORF;ENST00000414193.2_1_X:100698832-100699039:-|nuORF;ENST00000452411.1_1_7:98083525-98083918:-|nuORF;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENSG00000196262|ENST00000468812|PPIA;ENST00000527147.1_1_11:100537243-100537690:+|nuORF	NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF	NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	508.2640380859375	2	508.263999	1014.51345	0.19025	9.6697E-05	0.074395	3.7812E-05	0.26464	0.00013451	508.2639584282887	34.504	2.021	34.207	33.042	35.063	-0.29707					60	38	2	0	0	0	0.079196	1	12688	12688		99.799	39.725	1	15692000			5679	9696;6056;8593	3027	3057	5561	5561					0.006768834091417375
DENGGGAGGS	10	Unmodified	_DENGGGAGGS_					0	0	0		DUSP4|p.R21Q|1|0.35|ENSG00000120875|chr8:29350217-29350217|C/T|missense_variant;DUSP4|p.P196Sfs*42|1|0.52|ENSG00000120875|chr8:29338496-29338497|-/C|frameshift_variant;ENSG00000120875|ENST00000240100|DUSP4	DUSP4|p.R21Q|1|0.35|ENSG00000120875|chr8:29350217-29350217|C/T|missense_variant	DUSP4|p.R21Q|1|0.35|ENSG00000120875|chr8:29350217-29350217|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	820.3067016601562	1	820.306766	819.299489	0.88265	0.00072405	0.066396	5.4465E-05	0.94905	0.00077851	820.3063263431021	34.154	0.41714	34.154	34.024	34.441	0					9	7	2	0	0	0	0.87945	1	12685	12685		3.5965	1.2938	1	14676000			5680	738	3028	3058	5562	5562					-0.1173886875754988
DENGKISRL	9	Unmodified	_DENGKISRL_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENST00000591758.1_1_16:61089351-61089522:-|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S1	1	516.2775268554688	2	516.277638	1030.54072	0.32113	0.00016579	-0.10851	-5.6023E-05	0.21261	0.00010977	516.2774491782656	25.058	0.20967	25.058	24.935	25.144	0					7	3	3	0	0	0	0.012343	1	9004	9004		107.56	59.218	1	13421000			5681	3840	3029	3059	5563	5563					0.026673669495039576
DENGKIVGY	9	Unmodified	_DENGKIVGY_					0	0	0		ENST00000478177.1_1_X:153199394-153200402:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	497.7455139160156	2	497.745639	993.476725	0.27191	0.00013534	-0.66247	-0.00032974	-0.39055	-0.0001944	497.7452876811522	29.971	0.20771	29.971	29.841	30.049	0					5	3	2	0	0	0	0.0058997	1	11000	11000		129.77	40.869	1	13130000			5682	1820	3030	3060	5564	5564					-0.02027413207429163
DENGKIVGY	9	Unmodified	_DENGKIVGY_					0	0	0		ENST00000478177.1_1_X:153199394-153200402:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	497.74542236328125	2	497.745639	993.476725	0.064528	3.2118E-05	-0.66427	-0.00033064	-0.59974	-0.00029852	497.74526957226976	30.338	0.30829	30.054	29.925	30.233	-0.28453					9	5	2	0	0	0	0.0045841	1	11153	11153		142.08	41.708	1	59780000			5683	1820	3030	3060	5565	5565					-0.02027413207429163
DENGKIVGY	9	Unmodified	_DENGKIVGY_					0	0	0		ENST00000478177.1_1_X:153199394-153200402:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	497.74578857421875	2	497.745639	993.476725	0.32164	0.0001601	-0.28247	-0.0001406	0.039169	1.9496E-05	497.74539682809353	30.445	0.3515	30.195	30.017	30.369	-0.24946					31	19	2	0	0	0	0.0045841	1	11077	11077		142.08	41.708	1	35025000			5684	1820	3030	3060	5566	5566					-0.02027413207429163
DENGKIVGY	9	Unmodified	_DENGKIVGY_					0	0	0		ENST00000478177.1_1_X:153199394-153200402:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	ENST00000478177.1_1_X:153199394-153200402:-|nuORF	MSMS	HCT116MG_D190212_S4	4	497.7456359863281	2	497.745639	993.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.562	1	30.198	29.698	30.698	-0.36416								0	0	0	5.6938E-05	1	11061	11061		142.08	41.708	1				5685	1820	3030	3060	5567	5567					-0.02027413207429163
DENLENELSDY	11	Unmodified	_DENLENELSDY_					0	0	0			REV__ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant	REV__ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	670.7797241210938	2	670.778061	1339.54157	0.94204	0.0006319	0.64079	0.00042983	1.5828	0.0010617	670.7786185984073	25.752	0.31275	25.624	25.494	25.807	-0.12795					12	5	3	0	0	0	0.2665	1	9216	9216		67.838	17.905	1	29759000	+		5686	9974	3031	3061	5568	5568					-0.11461927982736597
DENLENELSDY	11	Unmodified	_DENLENELSDY_					0	0	0			REV__ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant	REV__ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	670.7786865234375	2	670.778061	1339.54157	0.67638	0.0004537	0.8657	0.00058069	1.5421	0.0010344	670.7785311447683	25.986	0.26025	25.696	25.568	25.828	-0.29023					11	4	4	0	0	0	0.39766	1	9242	9242		55.235	5.3016	1	13642000	+		5687	9974	3031	3061	5569	5569					-0.11461927982736597
DENLENELSDY	11	Unmodified	_DENLENELSDY_					0	0	0			REV__ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant	REV__ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	670.778061	1339.54157	0.94204	0.0006319	0.64079	0.00042983	1.5828	0.0010617	670.7786185984073	25.752	0.31275	25.624	25.494	25.807	-0.12795	-0.035826	-9.8958E-05	NaN	67.838	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29759000	+		5688	9974	3031	3061							-0.11461927982736597
DENLENELSDY	11	Unmodified	_DENLENELSDY_					0	0	0			REV__ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant	REV__ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	670.778061	1339.54157	0.67638	0.0004537	0.8657	0.00058069	1.5421	0.0010344	670.7785311447683	25.986	0.26025	25.696	25.568	25.828	-0.29023	0.035826	0.00020276	NaN	67.838	11	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13642000	+		5689	9974	3031	3061							-0.11461927982736597
DENLVEVKF	9	Unmodified	_DENLVEVKF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-SECPEP	HCT116MG_D190212_S1	1	547.3314819335938	2	546.782222	1091.54989	0.41112	0.00022479	-0.10603	-5.7977E-05	0.30508	0.00016681	546.7822951816443	48.91	0.206	48.91	48.768	48.974	0					5	3	2	0	0	0	0.24524	1	18587	18587		14.405	12.923	1	6746700			5690	3707	3032	3062	5570	5570					0.007777155151870829
DENLVEVKF	9	Unmodified	_DENLVEVKF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MATCH	HCT116MG_D190212_S3	3		2	546.782222	1091.54989	0.46318	0.00025326	0.56013	0.00030627	1.0233	0.00055953	546.7822906576906	49.229	0.21058	48.913	48.816	49.027	-0.31596	0.0011171	0.00027819	NaN	14.405	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2248200			5691	3707	3032	3062							0.007777155151870829
DENNKFNEF	9	Unmodified	_DENNKFNEF_					0	0	0		FNIP1|p.P733Tfs*4|1|0.29|ENSG00000217128|chr5:131672247-131672248|-/T|frameshift_variant;FNIP1|p.K732Nfs*23|1|0.16|ENSG00000217128|chr5:131672248-131672248|T/-|frameshift_variant;FNIP1|p.N877Kfs*2|1|0.45|ENSG00000217128|chr5:131671813-131671814|-/T|frameshift_variant;FNIP1|p.I925Nfs*6|1|0.21|ENSG00000217128|chr5:131671670-131671671|-/T|frameshift_variant;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1	FNIP1|p.P733Tfs*4|1|0.29|ENSG00000217128|chr5:131672247-131672248|-/T|frameshift_variant	FNIP1|p.P733Tfs*4|1|0.29|ENSG00000217128|chr5:131672247-131672248|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	578.8689575195312	2	578.74891	1155.48327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.861	1	37.768	37.268	38.268	-0.09301								0	0	0	0.38321	1	14206	14206		34.402	10.381	1				5692	6458	3033	3063	5571	5571					-0.08825520046730162
DENQFVAV	8	Unmodified	_DENQFVAV_					0	0	0		ENSG00000072832|ENST00000324989|CRMP1;nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3	ENSG00000072832|ENST00000324989|CRMP1	ENSG00000072832|ENST00000324989|CRMP1	MULTI-MSMS	HCT116MG_D190212_S3	3	921.4312744140625	1	921.431238	920.423961	0.88591	0.0008163	0.0314	2.8933E-05	0.91731	0.00084524	921.4311192289607	42.682	0.31252	42.379	42.196	42.509	-0.30352					8	5	2	0	0	0	0.19608	1	15909	15909		74.423	3.2892	1	6167300			5693	1277	3034	3064	5572	5572					-0.039433712702361845
DENQFVAV	8	Unmodified	_DENQFVAV_					0	0	0		ENSG00000072832|ENST00000324989|CRMP1;nc|ENSG00000092964|Q16555-2|DPYSL2;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;nc|ENSG00000092964|Q16555|DPYSL2;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;DPYSL3|p.A516Qfs*15|1|0.31|ENSG00000113657|chr5:147395638-147395638|G/-|frameshift_variant;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000113657|ENST00000343218|DPYSL3	ENSG00000072832|ENST00000324989|CRMP1	ENSG00000072832|ENST00000324989|CRMP1	MULTI-MATCH	HCT116MG_D190212_S4	4		1	921.431238	920.423961	0.74887	0.00069003	0.0016521	1.5223E-06	0.75052	0.00069155	921.4316515894758	42.722	0.15051	42.347	42.254	42.405	-0.37493	-0.015721	-2.2683E-05	NaN	74.423	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1196000			5694	1277	3034	3064							-0.039433712702361845
DENSAFLQF	9	Unmodified	_DENSAFLQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	HCT116MG_D190212_S3	3	535.7432250976562	2	535.743096	1069.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.198	1	55.915	55.415	56.415	-0.28367								0	0	0	0.24841	1	21330	21330		43.858	23.405	1				5695	6166	3035	3065	5573	5573					-0.06031717070072773
DENSAFLQF	9	Unmodified	_DENSAFLQF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	HCT116MG_D190212_S4	4	535.743408203125	2	535.743096	1069.47164	0.58567	0.00031377	-0.27659	-0.00014818	0.30908	0.00016559	535.7431221501679	56.145	0.16046	55.839	55.723	55.884	-0.30626					4	2	2	0	0	0	0.21258	1	21053	21053		39.95	22.837	1	3420500			5696	6166	3035	3065	5574	5574					-0.06031717070072773
DENSLEYKY	9	Unmodified	_DENSLEYKY_					0	0	0		ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-3|SUGP2;nc|ENSG00000064607|Q8IX01-4|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MSMS	HCT116MG_D190212_S1	1	580.7593383789062	2	580.758943	1159.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.626	1	33.626	33.126	34.126	0								0	0	0	0.080552	1	12451	12451		61.602	42.345	1				5697	9074	3036	3066	5575	5575					-0.07003769106768232
DENSLEYKY	9	Unmodified	_DENSLEYKY_					0	0	0		ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-3|SUGP2;nc|ENSG00000064607|Q8IX01-4|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	580.7590942382812	2	580.758943	1159.50333	0.66023	0.00038343	0.37209	0.00021609	1.0323	0.00059952	580.7592067416235	33.701	0.36405	33.508	33.327	33.691	-0.19297					10	6	2	0	0	0	0.0082095	1	12523	12523		117.76	73.988	1	36079000			5698	9074	3036	3066	5576	5576					-0.07003769106768232
DENSLEYKY	9	Unmodified	_DENSLEYKY_					0	0	0		ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-3|SUGP2;nc|ENSG00000064607|Q8IX01-4|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	580.7589721679688	2	580.758943	1159.50333	0.46262	0.00026867	0.081471	4.7315E-05	0.54409	0.00031599	580.758826375442	33.931	0.25994	33.637	33.455	33.715	-0.29419					8	4	2	0	0	0	0.0035136	1	12477	12477		168.54	112.36	1	10610000			5699	9074	3036	3066	5577	5577					-0.07003769106768232
DENSLEYKY	9	Unmodified	_DENSLEYKY_					0	0	0		ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-3|SUGP2;nc|ENSG00000064607|Q8IX01-4|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	580.758943	1159.50333	0.5894	0.0003423	0.26876	0.00015608	0.85816	0.00049838	580.7593119662982	33.546	0.20778	33.546	33.4	33.607	0	-0.017981	0.00010581	NaN	168.54	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3366700			5700	9074	3036	3066							-0.07003769106768232
DENSVIKSF	9	Unmodified	_DENSVIKSF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	HCT116MG_D190212_S1	1	519.7592163085938	2	519.758746	1037.50294	0.62025	0.00032238	-0.062721	-3.26E-05	0.55752	0.00028978	519.75867270946	41.83	0.26028	41.83	41.654	41.914	0					12	4	3	0	0	0	0.0034669	1	15743	15743		163.69	74.733	1	53277000			5701	3114	3037	3067	5578	5578					-0.014311440359506378
DENSVIKSF	9	Unmodified	_DENSVIKSF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7587890625	2	519.758746	1037.50294	0.41118	0.00021372	0.021724	1.1291E-05	0.43291	0.00022501	519.7586995852594	41.799	0.51781	41.731	41.498	42.016	-0.068199					27	9	4	0	0	0	1.0364E-10	1	15785	15785		236.66	122.01	1	387330000			5702	3114	3037	3067	5579	5579					-0.014311440359506378
DENSVIKSF	9	Unmodified	_DENSVIKSF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	HCT116MG_D190212_S2	2	1038.5107421875	1	1038.51022	1037.50294	0.79662	0.0008273	-0.033308	-3.4591E-05	0.76331	0.00079271	1038.5097192990333	41.794	0.31181	41.726	41.549	41.861	-0.068199					11	5	3	0	0	0	0.00054449	1	15809	15809		195.04	65.266	1	36669000			5703	3114	3037	3067	5580	5580					-0.014311440359506378
DENSVIKSF	9	Unmodified	_DENSVIKSF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	HCT116MG_D190212_S3	3	519.7588500976562	2	519.758746	1037.50294	0.26312	0.00013676	0.23427	0.00012176	0.49738	0.00025852	519.7587985224783	42.057	0.57241	41.755	41.52	42.093	-0.30257					28	10	4	0	0	0	0.0034268	1	15635	15635		179.28	90.33	1	116270000			5704	3114	3037	3067	5581	5581					-0.014311440359506378
DENSVIKSF	9	Unmodified	_DENSVIKSF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	HCT116MG_D190212_S3	3	1038.51171875	1	1038.51022	1037.50294	0.51152	0.00053122	0.23705	0.00024618	0.74857	0.0007774	1038.5101770723036	42.057	0.20789	41.755	41.625	41.833	-0.30257					5	3	2	0	0	0	0.005219	1	15671	15671		135.72	49.387	1	7593700			5705	3114	3037	3067	5582	5582					-0.014311440359506378
DENSVIKSF	9	Unmodified	_DENSVIKSF_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.T327Nfs*8|1|0.06|ENSG00000130935|chr17:67735945-67735946|-/T|frameshift_variant	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	HCT116MG_D190212_S4	4	519.7589721679688	2	519.758746	1037.50294	0.31374	0.00016307	0.18124	9.4203E-05	0.49498	0.00025727	519.7587825413896	42.085	0.41311	41.709	41.581	41.994	-0.37565					18	7	3	0	0	0	0.0035894	1	15457	15457		176.43	97.699	1	37153000			5706	3114	3037	3067	5583	5583					-0.014311440359506378
DENYFVNY	8	Unmodified	_DENYFVNY_					0	0	0		KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant;nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant	KBTBD4|p.L138Wfs*13|1|0.08|ENSG00000123444|chr11:47577587-47577587|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	532.2215576171875	2	532.221997	1062.42944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.629	1	47.26	46.76	47.76	-0.36907								0	0	0	0.8837	1	17614	17614		11.64	3.047	1				5707	2803	3038	3068	5584	5584					-0.09927692478413519
DEPEHISQRM	10	Unmodified	_DEPEHISQRM_					0	0	0		ENST00000417098.5_1_2:200233407-200246524:-|nuORF	ENST00000417098.5_1_2:200233407-200246524:-|nuORF	ENST00000417098.5_1_2:200233407-200246524:-|nuORF	MSMS	HCT116MG_D190212_S3	3	620.8724975585938	2	621.282594	1240.55064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.536	1	50.222	49.722	50.722	-0.31381								0	0	0	0.94339	1	19059	19059		6.2058	0.9089	1				5708	7762	3039	3069	5585	5585					-0.06001813107400267
DEPLIHVF	8	Unmodified	_DEPLIHVF_					0	0	0		ENSG00000157778|ENST00000288607|PSMG3	ENSG00000157778|ENST00000288607|PSMG3	ENSG00000157778|ENST00000288607|PSMG3	MULTI-MSMS	HCT116MG_D190212_S2	2	486.2213439941406	2	485.255643	968.496732	0.16924	8.2124E-05	0.13199	6.4051E-05	0.30123	0.00014618	485.25567634700684	54.876	0.205	54.688	54.56	54.765	-0.18797					5	3	2	0	0	0	0.76257	1	21107	21107		15.768	1.1865	1	13282000			5709	4343	3040	3070	5586	5586					0.011223825231923001
DEPLIHVF	8	Unmodified	_DEPLIHVF_					0	0	0		ENSG00000157778|ENST00000288607|PSMG3	ENSG00000157778|ENST00000288607|PSMG3	ENSG00000157778|ENST00000288607|PSMG3	MULTI-MSMS	HCT116MG_D190212_S3	3	485.2557067871094	2	485.255643	968.496732	0.1706	8.2786E-05	0.3036	0.00014732	0.4742	0.00023011	485.25567015427634	54.983	0.20908	54.691	54.56	54.77	-0.2918					5	3	2	0	0	0	0.62454	1	20875	20875		30.198	19.084	1	4984100			5710	4343	3040	3070	5587	5587					0.011223825231923001
DEPNTLDEMRD	11	Unmodified	_DEPNTLDEMRD_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	HCT116MG_D190212_S2	2	667.7804565429688	2	667.780081	1333.54561	0.52123	0.00034806	0.62234	0.00041558	1.1436	0.00076365	667.7805793738899	33.73	0.36397	33.537	33.43	33.794	-0.19296					8	6	2	0	0	0	0.71532	1	12541	12541		16.149	3.1066	1	22188000	+		5711	13075	3041	3071	5588	5588					-0.10782161760698727
DEPPQSPWDR	10	Unmodified	_DEPPQSPWDR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	613.7757568359375	2	613.775459	1225.53637	0.42696	0.00026206	0.36015	0.00022105	0.78711	0.00048311	614.2776378644436	33.774	1.0865	33.484	33.049	34.136	-0.29013					33	20	3	0	0	0	0.52513	1	12402	12402		33.445	20.402	1	4275600			5712	2597	3042	3072	5589	5589					-0.06738142264066482
DEPPQSPWDR	10	Unmodified	_DEPPQSPWDR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S4	4	614.2787475585938	2	613.775459	1225.53637	0.87757	0.00053863	0.11205	6.8771E-05	0.98962	0.0006074	613.7753430963525	33.92	1.0372	33.536	33.051	34.089	-0.38427					35	20	2	0	0	0	0.54524	4	12220	12220;12245;12488;12503		32.037	18.131	1	3278100			5713	2597	3042	3072	5590;5591;5592;5593	5590					-0.06738142264066482
DEPSPLEM	8	Unmodified	_DEPSPLEM_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	HCT116MG_D190212_S3	3	459.2799987792969	2	459.199676	916.384799	0.3443	0.0001581	0.65324	0.00029997	0.99754	0.00045807	459.1999368077818	49.33	0.36676	49.014	48.87	49.237	-0.31596					9	6	2	0	0	0	0.28869	1	18564	18564		24.674	24.674	1	2871800	+		5714	11544	3043	3073	5594	5594					-0.07673839616109035
DEPSWPNF	8	Unmodified	_DEPSWPNF_					0	0	0			REV__ENSG00000159495|ENST00000452443|TGM7	REV__ENSG00000159495|ENST00000452443|TGM7	MSMS	HCT116MG_D190212_S3	3	495.8390197753906	2	496.211432	990.408311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.084	1	52.781	52.281	53.281	-0.30305								0	0	0	0.8837	1	20083	20083		9.3474	0	1		+		5715	12807	3044	3074	5595	5595					-0.087276577872899
DEQGLCRKH	9	Unmodified	_DEQGLCRKH_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MSMS	HCT116MG_D190212_S3	3	543.2630004882812	2	543.261465	1084.50838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.626	1	40.324	39.824	40.824	-0.30161								0	0	0	0.76739	1	15088	15088		10.074	0	1				5716	2032	3045	3075	5596	5596					-0.030497437251369774
DEQISERIR	9	Unmodified	_DEQISERIR_					0	0	0			REV__nc|ENSG00000165458|O15357-2|INPPL1	REV__nc|ENSG00000165458|O15357-2|INPPL1	MSMS	HCT116MG_D190212_S4	4	573.2987060546875	2	573.299101	1144.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.857	1	51.512	51.012	52.012	-0.34538								0	0	0	0.76603	1	19313	19313		14.838	1.7958	1		+		5717	13054	3046	3076	5597	5597					0.017141370069339246
DEQISLLPP	9	Unmodified	_DEQISLLPP_					0	0	0		IL5RA|p.K27Q|1|0.07|ENSG00000091181|chr3:3104906-3104906|T/G|missense_variant	IL5RA|p.K27Q|1|0.07|ENSG00000091181|chr3:3104906-3104906|T/G|missense_variant	IL5RA|p.K27Q|1|0.07|ENSG00000091181|chr3:3104906-3104906|T/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	506.6898498535156	2	506.27149	1010.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.062	1	49.898	49.398	50.398	-0.16369								0	0	0	0.64498	1	19178	19178		21.747	0.87544	1				5718	9239	3047	3077	5598	5598					0.02358330486470095
DEQLKYWKY	9	Unmodified	_DEQLKYWKY_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	MULTI-MSMS	HCT116MG_D190212_S2	2	636.81787109375	2	636.816596	1271.61864	0.64974	0.00041376	-0.007456	-4.7481E-06	0.64228	0.00040902	636.8165545822991	40.751	0.25735	40.681	40.519	40.777	-0.069626					6	4	2	0	0	0	0.068828	2	15401	15334;15401		65.474	39.206	1	12705000			5719	1429	3048	3078	5599;5600	5600					-0.0063062018509754125
DEQLKYWKYWH	11	Unmodified	_DEQLKYWKYWH_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	MSMS	HCT116MG_D190212_S1	1	798.3858032226562	2	798.385708	1594.75686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.295	1	21.295	20.795	21.795	0								0	0	0	0.96141	1	7484	7484		0.35063	0	1				5720	1429	3049	3079	5601	5601					-0.016724969366350706
DEQLLTNVL	9	Unmodified	_DEQLLTNVL_					0	0	0		CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	522.7822875976562	2	522.782222	1043.54989	0.37735	0.00019727	0.053718	2.8083E-05	0.43107	0.00022536	522.782185078732	55.564	0.16577	55.277	55.192	55.358	-0.28773					4	2	2	0	0	0	0.64246	1	21104	21104		8.7454	2.0222	1	2179300			5721	595	3050	3080	5602	5602					0.029857155152058112
DEQNHLVVA	9	Unmodified	_DEQNHLVVA_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MSMS	HCT116MG_D190212_S2	2	512.7567749023438	2	512.756538	1023.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.535	1	31.286	30.786	31.786	-0.24883								0	0	0	0.019309	1	11636	11636		92.653	42.72	1				5722	1822	3051	3081	5603	5603					-0.012286084588708945
DEQNHLVVA	9	Unmodified	_DEQNHLVVA_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MSMS	HCT116MG_D190212_S3	3	512.7567138671875	2	512.756538	1023.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.634	1	31.364	30.864	31.864	-0.27028								0	0	0	0.029994	1	11564	11564		82.529	32.596	1				5723	1822	3051	3081	5604	5604					-0.012286084588708945
DEQNHLVVA	9	Unmodified	_DEQNHLVVA_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	HCT116MG_D190212_S4	4	512.7568969726562	2	512.756538	1023.49852	0.13434	6.8885E-05	0.07296	3.741E-05	0.2073	0.0001063	512.7565828819382	31.731	0.36334	31.356	31.226	31.59	-0.37529					8	6	2	0	0	0	0.069315	1	11546	11546		65.235	25.278	1	8449100			5724	1822	3051	3081	5605	5605					-0.012286084588708945
DEQQVNVL	8	Unmodified	_DEQQVNVL_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	944.4688110351562	1	944.468352	943.461075	0.90818	0.00085775	0.35311	0.0003335	1.2613	0.0011913	944.4685134550014	39.226	0.30957	39.148	38.968	39.277	-0.077835					10	5	3	0	0	0	0.12693	1	14759	14759		88.904	28.83	1	69132000			5725	2921	3052	3082	5606	5606					-0.01291699724481532
DEQQVNVL	8	Unmodified	_DEQQVNVL_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.73797607421875	2	472.737814	943.461075	0.4938	0.00023344	0.085887	4.0602E-05	0.57969	0.00027404	472.7378407536047	39.226	0.25818	39.148	39.019	39.277	-0.077835					9	4	3	0	0	0	0.060005	1	14783	14783		112.59	41.878	1	36108000			5726	2921	3052	3082	5607	5607					-0.01291699724481532
DEQQVNVL	8	Unmodified	_DEQQVNVL_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	472.7378845214844	2	472.737814	943.461075	0.18376	8.6872E-05	0.19231	9.091E-05	0.37607	0.00017778	472.7378326239179	39.451	0.41771	39.15	38.872	39.29	-0.30137					17	7	3	0	0	0	0.060005	1	14619	14619		112.59	41.878	1	23360000			5727	2921	3052	3082	5608	5608					-0.01291699724481532
DEQQVNVL	8	Unmodified	_DEQQVNVL_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	944.974365234375	1	944.468352	943.461075	0.63492	0.00059966	0.19835	0.00018734	0.83327	0.000787	944.4684611075494	39.415	0.46966	39.113	38.82	39.29	-0.30137					21	8	3	0	0	0	0.04708	1	14580	14580		96.285	45.43	1	37868000			5728	2921	3052	3082	5609	5609					-0.01291699724481532
DEQQVNVL	8	Unmodified	_DEQQVNVL_					0	0	0		ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant;nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	ID1|p.G120Afs*20|1|0.38|ENSG00000125968|chr20:31605737-31605737|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	472.73773193359375	2	472.737814	943.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.476	1	39.095	38.595	39.595	-0.38055								0	0	0	0.031338	1	14505	14505		100.37	39.982	1				5729	2921	3052	3082	5610	5610					-0.01291699724481532
DEQRLRDEY	9	Unmodified	_DEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MSMS	HCT116MG_D190212_S2	2	612.2859497070312	2	612.286191	1222.55783	0.49968	0.00030595	-0.67279	-0.00041194	-0.17312	-0.000106	612.285553087071	24.802	0.25926	24.426	24.296	24.556	-0.37521					7	4	2	0	0	0	0.082877	1	8920	8920		61.602	30.334	1	21381000			5730	1962	3053	3083	5611	5611					-0.04454757235339457
DEQRLRDEY	9	Unmodified	_DEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MSMS	HCT116MG_D190212_S4	4	612.2859497070312	2	612.286191	1222.55783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.816	1	24.547	24.047	25.047	-0.26881								0	0	0	0.76759	1	8763	8763		9.3831	2.2814	1				5731	1962	3053	3083	5612	5612					-0.04454757235339457
DEQRLRDEY	9	Unmodified	_DEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	612.286191	1222.55783	0.38861	0.00023794	-0.21412	-0.0001311	0.17449	0.00010684	612.2862547869183	24.503	0.26025	24.419	24.237	24.497	-0.083694	-0.0036806	9.7784E-05	NaN	61.602	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4923200			5732	1962	3053	3083							-0.04454757235339457
DEQYAWES	8	Unmodified	_DEQYAWES_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	1027.400634765625	1	1027.40033	1026.39306	0.48424	0.00049751	-0.15177	-0.00015592	0.33248	0.00034159	1027.3997559593233	38.836	0.31218	38.534	38.352	38.664	-0.30137					8	5	2	0	0	0	0.12671	1	14413	14413		88.954	42.933	1	4957900			5733	1617;1401	3054	3084	5613	5613					-0.11908569375145817
DERAIEAL	8	Unmodified	_DERAIEAL_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	HCT116MG_D190212_S2	2	458.74029541015625	2	458.740357	915.46616	-0.049481	-2.2699E-05	0.22712	0.00010419	0.17764	8.149E-05	458.7404945404049	38.078	0.3098	37.985	37.857	38.167	-0.09301					9	5	2	0	0	0	0.3588	1	14327	14327		53.833	13.883	1	12677000			5734	3337	3055	3085	5614	5614					0.005046041381433497
DERAIEAL	8	Unmodified	_DERAIEAL_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	HCT116MG_D190212_S3	3	458.7402038574219	2	458.740357	915.46616	0.37394	0.00017154	-0.48354	-0.00022182	-0.1096	-5.028E-05	458.7402073290282	38.327	0.31102	38.025	37.833	38.144	-0.30137					9	5	2	0	0	0	0.26254	1	14195	14195		62.573	12.64	1	6202900			5735	3337	3055	3085	5615	5615					0.005046041381433497
DERAIEAL	8	Unmodified	_DERAIEAL_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MATCH	HCT116MG_D190212_S4	4		2	458.740357	915.46616	-0.048953	-2.2457E-05	0.59107	0.00027115	0.54212	0.00024869	458.7404835732095	38.383	0.23737	38.001	37.813	38.05	-0.38228	-0.0029818	0.00042994	NaN	62.573	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1791700			5736	3337	3055	3085							0.005046041381433497
DEREVVRM	8	Unmodified	_DEREVVRM_					0	0	0		ENSG00000099821|ENST00000588649|POLRMT	ENSG00000099821|ENST00000588649|POLRMT	ENSG00000099821|ENST00000588649|POLRMT	MULTI-MSMS	HCT116MG_D190212_S2	2	517.2584838867188	2	517.258391	1032.50223	0.22246	0.00011507	0.2092	0.00010821	0.43166	0.00022328	517.2585586625102	29	0.25682	28.683	28.555	28.812	-0.31613					6	4	2	0	0	0	0.20984	1	10635	10635		71.708	43.221	1	26169000			5737	1644	3056	3086	5616	5616					-0.012722619566375215
DEREVVRM	8	Unmodified	_DEREVVRM_					0	0	0		ENSG00000099821|ENST00000588649|POLRMT	ENSG00000099821|ENST00000588649|POLRMT	ENSG00000099821|ENST00000588649|POLRMT	MULTI-MATCH	HCT116MG_D190212_S4	4		2	517.258391	1032.50223	0.25626	0.00013255	0.90958	0.00047049	1.1658	0.00060304	517.258558071757	29.148	0.15574	28.808	28.73	28.886	-0.34059	0.057604	0.00056165	NaN	71.708	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1997300			5738	1644	3056	3086							-0.012722619566375215
DERISVPAKR	10	Unmodified	_DERISVPAKR_					0	0	0		SYNPO2|p.R670Q|1|0.24|ENSG00000172403|chr4:119030784-119030784|G/A|missense_variant;nc|ENSG00000172403|Q9UMS6-5|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2	SYNPO2|p.R670Q|1|0.24|ENSG00000172403|chr4:119030784-119030784|G/A|missense_variant	SYNPO2|p.R670Q|1|0.24|ENSG00000172403|chr4:119030784-119030784|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	391.2841796875	3	390.891166	1169.65167	-0.030482	-1.1915E-05	-0.15482	-6.0519E-05	-0.18531	-7.2434E-05	390.8910740077246	10.717	0.33109	10.444	10.296	10.627	-0.27365					19	12	2	0	0	0	0.88752	1	3443	3443		0.69767	0.07084	1	655170			5739	5249	3057	3087	5617	5617					0.07363006657601545
DERKDFYRT	9	Unmodified	_DERKDFYRT_					0	0	0		nc|ENSG00000135164|Q9Y222-4|DMTF1;nc|ENSG00000135164|Q9Y222-2|DMTF1;nc|ENSG00000135164|Q9Y222-3|DMTF1;DMTF1|p.N415Tfs*28|1|0.3|ENSG00000135164|chr7:87188128-87188128|A/-|frameshift_variant;nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1	nc|ENSG00000135164|Q9Y222-4|DMTF1	nc|ENSG00000135164|Q9Y222-4|DMTF1	MSMS	HCT116MG_D190212_S4	4	410.5350341796875	3	410.53516	1228.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.328	1	23.08	22.58	23.58	-0.24775								0	0	0	0.76785	1	8162	8162		8.4443	0	1				5740	693	3058	3088	5618	5618					-0.02149862993064744
DERKLIQF	8	Unmodified	_DERKLIQF_					0	0	0		ENSG00000114388|ENST00000232501|NPRL2;ENST00000461020.5_1_3:50385039-50386041:-|nuORF;ENST00000487632.5_1_3:50385039-50386411:-|nuORF	ENSG00000114388|ENST00000232501|NPRL2	ENSG00000114388|ENST00000232501|NPRL2	MULTI-MSMS	HCT116MG_D190212_S1	1	524.7920532226562	2	524.792924	1047.57129	0.26785	0.00014057	-0.87104	-0.00045712	-0.60319	-0.00031655	524.7921972973729	42.977	0.20818	42.977	42.847	43.056	0					5	3	2	0	0	0	0.57666	1	16253	16253		34.402	5.3201	1	8933300			5741	2417	3059	3089	5619	5619					0.049411453345555856
DERKLIQF	8	Unmodified	_DERKLIQF_					0	0	0		ENSG00000114388|ENST00000232501|NPRL2;ENST00000461020.5_1_3:50385039-50386041:-|nuORF;ENST00000487632.5_1_3:50385039-50386411:-|nuORF	ENSG00000114388|ENST00000232501|NPRL2	ENSG00000114388|ENST00000232501|NPRL2	MULTI-MSMS	HCT116MG_D190212_S2	2	524.792236328125	2	524.792924	1047.57129	0.53978	0.00028327	-0.51459	-0.00027005	0.025192	1.3221E-05	524.7926814066863	42.837	0.20634	42.767	42.637	42.844	-0.069984					5	3	2	0	0	0	0.23645	1	16243	16243		66.457	28.483	1	26547000			5742	2417	3059	3089	5620	5620					0.049411453345555856
DERKLRTFY	9	Unmodified	_DERKLRTFY_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S1	1	409.88751220703125	3	409.887533	1226.64077	0.092544	3.7933E-05	-0.83134	-0.00034075	-0.73879	-0.00030282	409.88726185708805	31.189	0.20847	31.189	31.023	31.232	0					5	3	2	0	0	0	0.21959	1	11477	11477		31.462	21.147	1	6157200			5743	3464	3060	3090	5621	5621					0.036516042833454776
DERKLRTFY	9	Unmodified	_DERKLRTFY_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S2	2	409.8872985839844	3	409.887533	1226.64077	0.089739	3.6783E-05	-0.34766	-0.0001425	-0.25792	-0.00010572	409.88735692300713	31.468	0.31052	31.219	31.043	31.354	-0.24883					14	5	3	0	0	0	0.013592	1	11603	11603		88.576	46.263	1	57077000			5744	3464	3060	3090	5622	5622					0.036516042833454776
DERKLRTFY	9	Unmodified	_DERKLRTFY_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S2	2	614.327392578125	2	614.327662	1226.64077	0.64202	0.00039441	0.13689	8.4096E-05	0.77891	0.0004785	614.3274531719229	31.45	0.31052	31.201	31.043	31.354	-0.24883					12	5	3	0	0	0	0.011034	1	11613	11613		110.79	66.811	1	39271000			5745	3464	3060	3090	5623	5623					0.036516042833454776
DERKLRTFY	9	Unmodified	_DERKLRTFY_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S3	3	409.8873596191406	3	409.887533	1226.64077	0.0014183	5.8133E-07	0.19229	7.8817E-05	0.19371	7.9398E-05	409.8875182988918	31.577	0.26074	31.306	31.169	31.43	-0.27028					10	4	3	0	0	0	0.025331	1	11550	11550		84.738	35.21	1	12198000			5746	3464	3060	3090	5624	5624					0.036516042833454776
DERKLRTFY	9	Unmodified	_DERKLRTFY_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S3	3	614.8295288085938	2	614.327662	1226.64077	0.362	0.00022239	0.24315	0.00014937	0.60514	0.00037176	614.8294870084428	31.57	0.26074	31.299	31.169	31.43	-0.27028					9	4	3	0	0	0	0.28785	1	11565	11565		32.037	0.76914	1	6879000			5747	3464	3060	3090	5625	5625					0.036516042833454776
DERKLRTFY	9	Unmodified	_DERKLRTFY_					0	0	0		ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MATCH	HCT116MG_D190212_S4	4		3	409.887533	1226.64077	0.042895	1.7582E-05	0.17899	7.3365E-05	0.22188	9.0947E-05	409.88741479140253	31.766	0.20768	31.391	31.226	31.434	-0.37529	0.11432	0.00047153	NaN	88.576	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3064100			5748	3464	3060	3090							0.036516042833454776
DERKVNEL	8	Unmodified	_DERKVNEL_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant;ENST00000557005.1_1_14:64490935-64514966:+|nuORF;SYNE2|p.F2563Ifs*28|1|0.34|ENSG00000054654|chr14:64051593-64051594|-/A|frameshift_variant;SYNE2|p.F2840Lfs*3|1|0.38|ENSG00000054654|chr14:64052427-64052427|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	501.76434326171875	2	501.764363	1001.51417	0.41866	0.00021007	-1.1633	-0.00058371	-0.74465	-0.00037364	501.7638548575057	23.656	0.36476	23.616	23.396	23.76	-0.03968					8	6	2	0	0	0	0.4906	1	8371	8371		41.956	5.8285	1	4382400			5749	1073	3061	3091	5626	5626					0.013476780581868297
DERLKDLF	8	Unmodified	_DERLKDLF_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2774047851562	2	518.277106	1034.53966	0.28726	0.00014888	0.39723	0.00020587	0.68449	0.00035475	518.2772287910797	45.943	0.35878	45.842	45.71	46.068	-0.10139					13	6	3	0	0	0	0.24143	1	17496	17496		65.474	6.7949	1	28452000			5750	1241	3062	3092	5627	5627					0.02377152580584152
DERLKDLF	8	Unmodified	_DERLKDLF_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	518.277106	1034.53966	0.51997	0.00026949	0.51315	0.00026595	1.0331	0.00053544	518.2775959671627	46.001	0.20851	46.001	45.87	46.079	0	0.079411	9.4863E-05	NaN	65.474	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12797000			5751	1241	3062	3092							0.02377152580584152
DERLQELEK	9	Unmodified	_DERLQELEK_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;ENST00000435830.6_1_3:37336478-37354923:+|nuORF;GOLGA4|p.T426Qfs*8|1|0.29|ENSG00000144674|chr3:37315456-37315456|A/-|frameshift_variant;GOLGA4|p.T447Qfs*13|1|0.31|ENSG00000144674|chr3:37315519-37315519|A/-|frameshift_variant;GOLGA4|p.N1805Tfs*6|1|0.38|ENSG00000144674|chr3:37327294-37327294|A/-|frameshift_variant;GOLGA4|p.N1805Kfs*18|1|0.11|ENSG00000144674|chr3:37327293-37327294|-/A|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	HCT116MG_D190212_S4	4	580.30078125	2	580.30131	1158.58807	0.13179	7.648E-05	0.11051	6.4127E-05	0.2423	0.00014061	580.301209753159	32.262	0.20753	31.886	31.745	31.952	-0.37613					5	3	2	0	0	0	0.37942	1	11767	11767		19.257	0	1	2646000			5752	3876	3063	3093	5628	5628					0.015116014298428126
DERLQKEF	8	Unmodified	_DERLQKEF_					0	0	0		ENST00000471997.1_1_2:147345807-147346347:+|nuORF	ENST00000471997.1_1_2:147345807-147346347:+|nuORF	ENST00000471997.1_1_2:147345807-147346347:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	532.3048095703125	2	532.772188	1063.52982	0.20628	0.0001099	0.051884	2.7642E-05	0.25817	0.00013754	532.772236171249	44.188	0.36451	44.11	43.916	44.281	-0.078373					12	6	3	0	0	0	0.63727	1	16824	16824		29.082	2.8134	1	86299000			5753	8169	3064	3094	5629	5629					0.0005996457521177945
DERLWFKGP	9	Unmodified	_DERLWFKGP_					0	0	0		GABRA5|p.R110W|1|0.52|ENSG00000186297|chr15:26883388-26883388|C/T|missense_variant	GABRA5|p.R110W|1|0.52|ENSG00000186297|chr15:26883388-26883388|C/T|missense_variant	GABRA5|p.R110W|1|0.52|ENSG00000186297|chr15:26883388-26883388|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	573.8407592773438	2	574.298373	1146.58219	0.41878	0.0002405	-0.63985	-0.00036746	-0.22107	-0.00012696	574.2977260221912	25.269	0.26021	24.894	24.764	25.024	-0.37521					6	4	2	0	0	0	0.23771	1	9124	9124		3.2813	0	1	8990200			5754	9176	3065	3095	5630	5630					0.014765477088303669
DERPIKVAHY	10	Unmodified	_DERPIKVAHY_					0	0	0			REV__nc|ENSG00000135424|Q13683-13|ITGA7	REV__nc|ENSG00000135424|Q13683-13|ITGA7	MSMS	HCT116MG_D190212_S1	1	614.3279418945312	2	614.327662	1226.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.247	1	31.247	30.747	31.747	0								0	0	0	0.89062	1	11490	11490		17.113	0.96379	1		+		5755	12089	3066	3096	5631	5631					0.0365160428332274
DERPTEQY	8	Unmodified	_DERPTEQY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	HCT116MG_D190212_S1	1	519.2304077148438	2	519.230353	1036.44615	0.39617	0.00020571	0.022218	1.1536E-05	0.41839	0.00021724	519.2302782131152	21.743	0.26044	21.743	21.594	21.854	0					7	4	2	0	0	0	0.15501	1	7679	7679		82.529	40.435	1	7842100			5756	4810	3067	3097	5632	5632					-0.07061191592470095
DERPTEQY	8	Unmodified	_DERPTEQY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2305908203125	2	519.230353	1036.44615	0.30913	0.00016051	0.090763	4.7127E-05	0.39989	0.00020764	519.2303409772508	22.101	0.31264	21.716	21.531	21.844	-0.38503					20	5	5	0	0	0	0.058063	2	7803	7803;7855		114.65	72.554	1	57714000			5757	4810	3067	3097	5633;5634	5633					-0.07061191592470095
DERPTEQY	8	Unmodified	_DERPTEQY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	HCT116MG_D190212_S3	3	519.23046875	2	519.230353	1036.44615	0.27412	0.00014233	0.2405	0.00012488	0.51462	0.00026721	519.2303461928885	21.703	0.57625	21.721	21.535	22.112	0.018446					20	10	4	0	0	0	0.068735	1	7578	7578		103.35	61.259	1	31151000			5758	4810	3067	3097	5635	5635					-0.07061191592470095
DERPTEQY	8	Unmodified	_DERPTEQY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	HCT116MG_D190212_S4	4	519.230712890625	2	519.230353	1036.44615	0.3198	0.00016605	0.02021	1.0493E-05	0.34001	0.00017654	519.2302946285572	21.93	0.36364	21.711	21.581	21.945	-0.21832					9	6	2	0	0	0	0.64404	1	7612	7612		28.487	17.663	1	7982600			5759	4810	3067	3097	5636	5636					-0.07061191592470095
DERRFQDAV	9	Unmodified	_DERRFQDAV_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP;PFKP|p.A370V|1|0.33|ENSG00000067057|chr10:3112241-3112241|C/T|missense_variant	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MSMS	HCT116MG_D190212_S1	1	568.2780151367188	2	568.278169	1134.54179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.238	1	28.238	27.738	28.738	0								0	0	0	0.4859	1	10280	10280		31.268	9.7314	1				5760	9376	3068	3098	5637	5637					-0.020104186815842695
DERRFQDAV	9	Unmodified	_DERRFQDAV_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP;PFKP|p.A370V|1|0.33|ENSG00000067057|chr10:3112241-3112241|C/T|missense_variant	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MSMS	HCT116MG_D190212_S2	2	568.2784423828125	2	568.278169	1134.54179	0.37926	0.00021552	-0.06781	-3.8535E-05	0.31145	0.00017699	568.2781870557056	28.61	0.20515	28.281	28.133	28.338	-0.32987					5	3	2	0	0	0	0.15281	1	10466	10466		60.074	28.806	1	25212000			5761	9376	3068	3098	5638	5638					-0.020104186815842695
DERRFQDAV	9	Unmodified	_DERRFQDAV_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP;PFKP|p.A370V|1|0.33|ENSG00000067057|chr10:3112241-3112241|C/T|missense_variant	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MSMS	HCT116MG_D190212_S3	3	568.2777099609375	2	568.278169	1134.54179	0.59986	0.00034089	-0.91727	-0.00052127	-0.31741	-0.00018038	568.2775691605169	28.565	0.31247	28.359	28.177	28.489	-0.20593					7	5	2	0	0	0	0.16143	1	10355	10355		57.722	23.32	1	4479200			5762	9376	3068	3098	5639	5639					-0.020104186815842695
DERRFQDAV	9	Unmodified	_DERRFQDAV_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP;PFKP|p.A370V|1|0.33|ENSG00000067057|chr10:3112241-3112241|C/T|missense_variant	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MATCH	HCT116MG_D190212_S1	1		2	568.278169	1134.54179	0.51594	0.0002932	-0.59828	-0.00033999	-0.082346	-4.6795E-05	568.2779591458612	28.159	0.15578	28.159	28.06	28.216	0	-0.10716	0.00013434	NaN	60.074	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3360800			5763	9376	3068	3098							-0.020104186815842695
DERRGDFQP	9	Unmodified	_DERRGDFQP_					0	0	0			REV__nc|ENSG00000165643|Q5JUK2|SOHLH1	REV__nc|ENSG00000165643|Q5JUK2|SOHLH1	MULTI-MSMS	HCT116MG_D190212_S3	3	560.2633666992188	2	560.262519	1118.51048	0.2823	0.00015816	-0.96208	-0.00053902	-0.67979	-0.00038086	560.2620756857044	16.542	0.3121	16.627	16.497	16.809	0.085424					6	5	2	0	0	0	0.53593	1	5528	5528		14.838	0.93222	1	1184100	+		5764	13069	3069	3099	5640	5640					-0.04402991715664939
DERRNAEQY	9	Unmodified	_DERRNAEQY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	HCT116MG_D190212_S1	1	590.7711181640625	2	590.770708	1179.52686	0.78147	0.00046167	-0.3657	-0.00021605	0.41577	0.00024562	590.7705148984636	17.802	0.20845	17.802	17.672	17.88	0					5	3	2	0	0	0	0.34272	1	6085	6085		26.268	11.43	1	6252500			5765	1691;18247	3070	3100	5641	5641					-0.055719105495882104
DERRNAEQY	9	Unmodified	_DERRNAEQY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9;SYNDIG1-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	HCT116MG_D190212_S2	2	590.771484375	2	590.770708	1179.52686	0.34767	0.00020539	0.48723	0.00028784	0.8349	0.00049323	590.7708991644137	18.293	0.26144	17.93	17.799	18.061	-0.36325					15	4	4	0	0	0	0.17622	1	6289	6289		43.772	19.752	1	37341000			5766	1691;18247	3070	3100	5642	5642					-0.055719105495882104
DERSNFQEA	9	Unmodified	_DERSNFQEA_					0	0	0		MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant;nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant	MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	548.2388916015625	2	548.238709	1094.46287	0.68019	0.00037291	-0.40227	-0.00022054	0.27792	0.00015237	548.2387336658803	24.124	0.31091	23.744	23.511	23.822	-0.38003					7	5	2	0	0	0	0.11363	1	8653	8653		55.503	28.619	1	10917000			5767	2658	3071	3101	5643	5643					-0.08058690706502603
DERSNFQEA	9	Unmodified	_DERSNFQEA_					0	0	0		MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant;nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant	MLH3|p.R593Tfs*22|1|0.05|ENSG00000119684|chr14:75047878-75047879|-/AGAACGAATATAAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	548.77294921875	2	548.238709	1094.46287	0.35457	0.00019439	0.14916	8.1775E-05	0.50373	0.00027617	548.2386689646969	23.878	0.41707	23.817	23.634	24.051	-0.061449					10	7	2	0	0	0	0.17622	2	8464	8464;8477		43.772	14.083	1	5159500			5768	2658	3071	3101	5644;5645	5644					-0.08058690706502603
DERSVHKV	8	Unmodified	_DERSVHKV_					0	0	0		ENSG00000106588|ENST00000223321|PSMA2;ENST00000411875.1_1_7:42961455-42966220:-|nuORF	ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	MULTI-MSMS	HCT116MG_D190212_S2	2	485.25958251953125	2	485.259248	968.503943	0.043403	2.1062E-05	0.057101	2.7709E-05	0.1005	4.877E-05	485.259185584037	11.705	0.25103	11.423	11.244	11.495	-0.28186					14	9	2	0	0	0	0.78619	1	3756	3756		13.042	4.2971	1	391370			5769	2086	3072	3102	5646	5646					0.018431151236200094
DERSVHKV	8	Unmodified	_DERSVHKV_					0	0	0		ENSG00000106588|ENST00000223321|PSMA2;ENST00000411875.1_1_7:42961455-42966220:-|nuORF	ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	MULTI-MSMS	HCT116MG_D190212_S2	2	485.25927734375	2	485.259248	968.503943	0.048791	2.3676E-05	0.20357	9.8783E-05	0.25236	0.00012246	485.2592980905656	15.58	0.46898	15.253	15.071	15.54	-0.32684					14	8	3	0	0	0	0.15091	1	5189	5189		83.429	41.589	1	14887000			5770	2086	3072	3102	5647	5647					0.018431151236200094
DERTFHIFY	9	Unmodified	_DERTFHIFY_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;MYH10|p.A411Pfs*11|1|0.15|ENSG00000133026|chr17:8546562-8546562|T/-|frameshift_variant	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	HCT116MG_D190212_S2	2	614.2933349609375	2	614.293288	1226.57202	0.30843	0.00018947	-0.32531	-0.00019984	-0.016883	-1.0371E-05	614.2928708531078	50.234	0.2554	50.062	49.883	50.138	-0.1719					6	4	2	0	0	0	0.45684	1	19276	19276		19.362	3.2128	1	30224000			5771	3221	3073	3103	5648	5648					-0.03220060016383286
DERVLVAF	8	Unmodified	_DERVLVAF_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-SECPEP	HCT116MG_D190212_S2	2	474.7916564941406	2	474.761092	947.507631	0.23746	0.00011274	0.40685	0.00019316	0.64432	0.0003059	474.76127223103924	51.286	0.25731	51.107	50.914	51.171	-0.17868					5	4	2	0	0	0	0.27344	1	19665	19665		26.268	7.0112	1	11915000			5772	6093	3074	3104	5649	5649					0.03177784897479796
DERYFNEM	8	Unmodified	_DERYFNEM_					0	0	0		ENSG00000108091|ENST00000263102|CCDC6	ENSG00000108091|ENST00000263102|CCDC6	ENSG00000108091|ENST00000263102|CCDC6	MULTI-MSMS	HCT116MG_D190212_S2	2	552.2265014648438	2	552.226756	1102.43896	0.1256	6.936E-05	0.063496	3.5064E-05	0.1891	0.00010442	552.2265352491211	39.837	0.25792	39.764	39.687	39.945	-0.072838					6	4	2	0	0	0	0.40176	1	15035	15035		49.933	15.831	1	20894000			5773	2146	3075	3105	5650	5650					-0.10816247464549633
DERYFNEM	8	Unmodified	_DERYFNEM_					0	0	0		ENSG00000108091|ENST00000263102|CCDC6	ENSG00000108091|ENST00000263102|CCDC6	ENSG00000108091|ENST00000263102|CCDC6	MSMS	HCT116MG_D190212_S4	4	552.2393188476562	2	552.226756	1102.43896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.205	1	39.826	39.326	40.326	-0.37858								0	0	0	0.8837	1	14742	14742		13.508	4.1604	1				5774	2146	3075	3105	5651	5651					-0.10816247464549633
DESAGAYAY	9	Unmodified	_DESAGAYAY_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-MSMS	HCT116MG_D190212_S3	3	946.3793334960938	1	946.378868	945.371591	0.64249	0.00060804	-0.11313	-0.00010706	0.52937	0.00050098	946.3786628832258	31.356	0.41787	31.086	30.856	31.274	-0.26933					15	7	3	0	0	0	0.026974	1	11437	11437		89.427	15.004	1	10396000			5775	1207	3076	3106	5652	5652					-0.10327954403862805
DESAGAYAY	9	Unmodified	_DESAGAYAY_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-MSMS	HCT116MG_D190212_S4	4	946.3788452148438	1	946.378868	945.371591	0.50626	0.00047911	0.28229	0.00026715	0.78855	0.00074627	946.3791655108848	31.346	0.31176	30.976	30.816	31.127	-0.37026					8	5	2	0	0	0	0.19218	1	11418	11418		42.095	26.247	1	2294000			5776	1207	3076	3106	5653	5653					-0.10327954403862805
DESALLLHQNP	11	Unmodified	_DESALLLHQNP_					0	0	0		ZNF337|p.T229P|1|0.24|ENSG00000130684|chr20:25676603-25676603|T/G|missense_variant	ZNF337|p.T229P|1|0.24|ENSG00000130684|chr20:25676603-25676603|T/G|missense_variant	ZNF337|p.T229P|1|0.24|ENSG00000130684|chr20:25676603-25676603|T/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	618.7547607421875	2	618.814584	1235.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.676	1	25.676	25.176	26.176	0								0	0	0	0.94012	1	9246	9246		11.495	0	1				5777	18727	3077	3107	5654	5654					0.006232903212094243
DESFARVV	8	Unmodified	_DESFARVV_					0	0	0		nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;PTK7|p.P254Rfs*35|1|0.33|ENSG00000112655|chr6:43130606-43130606|C/-|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant	nc|ENSG00000112655|Q13308-4|PTK7	nc|ENSG00000112655|Q13308-4|PTK7	MULTI-MSMS	HCT116MG_D190212_S3	3	461.7348937988281	2	461.735074	921.455596	0.39414	0.00018199	0.065217	3.0113E-05	0.45936	0.0002121	461.73495461515944	39.169	0.26279	38.868	38.716	38.979	-0.30137					6	4	2	0	0	0	0.72197	1	14560	14560		20.454	4.6064	1	5435400			5778	9429	3078	3108	5655	5655					-0.008273785162828062
DESFARVV	8	Unmodified	_DESFARVV_					0	0	0		nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;PTK7|p.P254Rfs*35|1|0.33|ENSG00000112655|chr6:43130606-43130606|C/-|frameshift_variant;PTK7|p.P510Hfs*39|1|0.35|ENSG00000112655|chr6:43139435-43139435|C/-|frameshift_variant;PTK7|p.D618Gfs*36|1|0.42|ENSG00000112655|chr6:43142009-43142010|-/G|frameshift_variant	nc|ENSG00000112655|Q13308-4|PTK7	nc|ENSG00000112655|Q13308-4|PTK7	MULTI-MATCH	HCT116MG_D190212_S2	2		2	461.735074	921.455596	0.17973	8.2988E-05	0.098374	4.5423E-05	0.27811	0.00012841	461.735124273492	38.934	0.20676	38.849	38.702	38.909	-0.084618	-0.0091886	2.2545E-05	NaN	20.454	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9181900			5779	9429	3078	3108							-0.008273785162828062
DESFAVKH	8	Unmodified	_DESFAVKH_					0	0	0		ENSG00000138398|ENST00000260970|PPIG;ENST00000530152.5_1_2:170460551-170487284:+|nuORF;nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant	ENSG00000138398|ENST00000260970|PPIG	ENSG00000138398|ENST00000260970|PPIG	MULTI-MSMS	HCT116MG_D190212_S1	1	466.7274169921875	2	466.727249	931.439946	0.20737	9.6784E-05	0.13099	6.1138E-05	0.33836	0.00015792	466.7272548921388	22.576	0.26055	22.576	22.428	22.689	0					6	4	2	0	0	0	0.37603	1	8022	8022		52.268	23.782	1	4970300			5780	3555	3079	3109	5656	5656					-0.028516650333358484
DESFAVKH	8	Unmodified	_DESFAVKH_					0	0	0		ENSG00000138398|ENST00000260970|PPIG;ENST00000530152.5_1_2:170460551-170487284:+|nuORF;nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant	ENSG00000138398|ENST00000260970|PPIG	ENSG00000138398|ENST00000260970|PPIG	MULTI-MSMS	HCT116MG_D190212_S2	2	466.7273254394531	2	466.727249	931.439946	0.15602	7.2817E-05	0.49439	0.00023074	0.6504	0.00030356	466.7272152402209	22.981	0.41647	22.596	22.466	22.882	-0.3852					16	7	3	0	0	0	0.1772	1	8190	8190		78.149	42.105	1	24482000			5781	3555	3079	3109	5657	5657					-0.028516650333358484
DESFAVKH	8	Unmodified	_DESFAVKH_					0	0	0		ENSG00000138398|ENST00000260970|PPIG;ENST00000530152.5_1_2:170460551-170487284:+|nuORF;nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant	ENSG00000138398|ENST00000260970|PPIG	ENSG00000138398|ENST00000260970|PPIG	MULTI-MSMS	HCT116MG_D190212_S3	3	466.7269287109375	2	466.727249	931.439946	0.23472	0.00010955	0.10318	4.8155E-05	0.3379	0.00015771	466.72716355665716	22.536	0.31257	22.517	22.335	22.647	-0.018869					8	5	2	0	0	0	0.46892	1	7916	7916		43.858	20.71	1	7266400			5782	3555	3079	3109	5658	5658					-0.028516650333358484
DESFAVKH	8	Unmodified	_DESFAVKH_					0	0	0		ENSG00000138398|ENST00000260970|PPIG;ENST00000530152.5_1_2:170460551-170487284:+|nuORF;nc|ENSG00000138398|Q13427-2|PPIG;PPIG|p.N420Mfs*33|1|0.4|ENSG00000138398|chr2:169636512-169636512|A/-|frameshift_variant	ENSG00000138398|ENST00000260970|PPIG	ENSG00000138398|ENST00000260970|PPIG	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	466.727249	931.439946	-0.16145	-7.5354E-05	3.2395	0.0015119	3.078	0.0014366	466.7271898803473	22.814	0.31322	22.576	22.393	22.706	-0.23758	0.010027	0.0028438	NaN	78.149	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3656500			5783	3555	3079	3109							-0.028516650333358484
DESGVFIY	8	Unmodified	_DESGVFIY_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	HCT116MG_D190212_S3	3	929.4247436523438	1	929.42509	928.417813	0.93963	0.00087332	-0.35686	-0.00033167	0.58277	0.00054164	929.4247631372059	52.018	0.33731	51.709	51.594	51.931	-0.30927					10	6	2	0	0	0	0.13911	1	19663	19663		86.121	39.2	1	8964200			5784	2753	3080	3110	5659	5659					-0.04925889501760139
DESGVFIY	8	Unmodified	_DESGVFIY_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MATCH	HCT116MG_D190212_S2	2		1	929.42509	928.417813	1.0731	0.00099735	-0.61257	-0.00056934	0.46052	0.00042802	929.4240880142625	51.838	0.15381	51.655	51.578	51.732	-0.18369	-0.027246	-0.00017548	NaN	86.121	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11209000			5785	2753	3080	3110							-0.04925889501760139
DESIPIMY	8	Unmodified	_DESIPIMY_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MULTI-MSMS	HCT116MG_D190212_S2	2	967.4451904296875	1	967.444111	966.436834	0.86077	0.00083274	0.2422	0.00023431	1.103	0.0010671	967.4444332905564	52.148	0.36135	51.96	51.832	52.193	-0.18725					11	6	3	0	0	0	0.053926	1	20054	20054		119.03	48.164	1	32049000			5786	987	3081	3111	5660	5660					-0.04772676202344428
DESIPIMY	8	Unmodified	_DESIPIMY_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MULTI-MSMS	HCT116MG_D190212_S3	3	967.4440307617188	1	967.444111	966.436834	0.64325	0.00062231	-0.15198	-0.00014703	0.49128	0.00047528	967.4439248087696	52.441	0.36604	52.134	51.934	52.3	-0.30639					11	6	2	0	0	0	0.03097	1	19819	19819		144.01	73.143	1	10195000			5787	987	3081	3111	5661	5661					-0.04772676202344428
DESIPIMY	8	Oxidation (M)	_DESIPIM(Oxidation (M))Y_		DESIPIM(1)Y		DESIPIM(53)Y	0	0	1		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MULTI-MSMS	HCT116MG_D190212_S3	3	983.4398193359375	1	983.439025	982.431749	0.99577	0.00097928	-0.68616	-0.0006748	0.30961	0.00030448	983.4385584781751	44.168	0.25906	43.86	43.76	44.019	-0.30759					7	4	2	0	0	0	0.37136	1	16530	16530		52.693	36.846	1	2582900			5788	987	3081	3112	5662	5662		16			-0.06016980064964628
DESKEFVKF	9	Unmodified	_DESKEFVKF_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;PCM1|p.N1992Tfs*15|1|0.25|ENSG00000078674|chr8:18025580-18025580|A/-|frameshift_variant;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	HCT116MG_D190212_S2	2	564.7824096679688	2	564.782222	1127.54989	0.27112	0.00015312	0.26072	0.00014725	0.53183	0.00030037	564.7822478177608	39.91	0.31101	39.837	39.739	40.05	-0.072838					11	5	3	0	0	0	0.37922	1	15050	15050		24.991	21.394	1	22656000			5789	1370	3082	3113	5663	5663					-0.008782844847928573
DESKFNAV	8	Unmodified	_DESKFNAV_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MSMS	HCT116MG_D190212_S3	3	454.86419677734375	2	455.219257	908.423961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.704	1	29.468	28.968	29.968	-0.23655								0	0	0	0.24844	1	10802	10802		61.357	21.4	1				5790	2759	3083	3114	5664	5664					-0.033913712702315024
DESKIVYVM	9	Unmodified	_DESKIVYVM_					0	0	0			REV__ENSG00000169375|ENST00000394947|SIN3A	REV__ENSG00000169375|ENST00000394947|SIN3A	MSMS	HCT116MG_D190212_S1	1	542.2738037109375	2	542.273175	1082.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.736	1	21.736	21.236	22.236	0								0	0	0	0.76669	1	7661	7661		12.532	0	1		+		5791	13240	3084	3115	5665	5665					-0.006167427311766005
DESLPGLAA	9	Unmodified	_DESLPGLAA_					0	0	0		REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	872.4359741210938	1	872.435989	871.428712	0.8879	0.00077464	-0.32289	-0.0002817	0.56501	0.00049294	872.435734909792	43.78	0.31306	43.474	43.344	43.657	-0.30616					7	5	2	0	0	0	0.0093514	1	16358	16358		114.94	68.023	1	3529400			5792	1442	3085	3116	5666	5666					-0.01214487127481334
DESLPGLAA	9	Unmodified	_DESLPGLAA_					0	0	0		REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	872.435989	871.428712	1.1652	0.0010165	-0.41593	-0.00036287	0.74923	0.00065366	872.4353328304342	43.622	0.20527	43.547	43.406	43.611	-0.074631	0.036446	-7.0841E-05	NaN	114.94	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9768000			5793	1442	3085	3116							-0.01214487127481334
DESPEGPDRRL	11	Unmodified	_DESPEGPDRRL_					0	0	0			REV__ENST00000455359.5_2_22:35653519-35659991:+|nuORF	REV__ENST00000455359.5_2_22:35653519-35659991:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	636.3067016601562	2	635.804748	1269.59494	0.68961	0.00043846	0.075984	4.8311E-05	0.7656	0.00048677	635.8046571147694	23.863	0.57488	23.863	23.418	23.993	0					16	10	2	0	0	0	0.73364	1	8490	8490		9.3831	0	1	7397800	+		5794	15742	3086	3117	5667	5667					-0.029070856895714314
DESPPVIDMP	10	Unmodified	_DESPPVIDMP_					0	0	0			REV__ENST00000463021.1_1_6:99858595-99858832:-|nuORF	REV__ENST00000463021.1_1_6:99858595-99858832:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	550.2174682617188	2	550.25244	1098.49033	0.46098	0.00025365	-0.54446	-0.00029959	-0.083477	-4.5933E-05	550.2522069215842	41.16	0.20942	40.858	40.736	40.945	-0.30185					5	3	2	0	0	0	0.30991	1	15257	15257		1.6526	0	1	2565100	+		5795	11988	3087	3118	5668	5668					-0.05497923490497669
DESQVVTRY	9	Unmodified	_DESQVVTRY_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S1	1	548.7676391601562	2	548.767103	1095.51965	0.80304	0.00044068	0.40599	0.00022279	1.209	0.00066348	548.7672477755499	28.561	0.15974	28.561	28.482	28.641	0					4	2	2	0	0	0	0.019537	1	10438	10438		96.936	45.306	1	5763700			5796	5231	3088	3119	5669	5669					-0.024286431500058825
DESQVVTRY	9	Unmodified	_DESQVVTRY_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2230224609375	2	548.767103	1095.51965	0.3846	0.00021105	0.18305	0.00010045	0.56765	0.00031151	548.7672095881958	28.937	0.20411	28.621	28.453	28.657	-0.31613					6	3	2	0	0	0	0.00446	2	10552	10552;10585		143.91	65.181	1	23255000			5797	5231	3088	3119	5670;5671	5670					-0.024286431500058825
DESQVVTRY	9	Unmodified	_DESQVVTRY_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S3	3	548.7677001953125	2	548.767103	1095.51965	0.56357	0.00030927	0.30504	0.0001674	0.86861	0.00047667	548.7672518020748	28.971	0.36452	28.749	28.473	28.838	-0.22196					13	6	3	0	0	0	0.097615	1	10504	10504		58.679	26.373	1	9826200			5798	5231	3088	3119	5672	5672					-0.024286431500058825
DESQVVTRY	9	Unmodified	_DESQVVTRY_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;ENST00000483667.1_1_3:49147547-49148163:-|nuORF	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MSMS	HCT116MG_D190212_S4	4	548.7676391601562	2	548.767103	1095.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.17	1	28.83	28.33	29.33	-0.34059								0	0	0	0.71477	1	10522	10522		18.373	0.22675	1				5799	5231	3088	3119	5673	5673					-0.024286431500058825
DESRSTQY	8	Unmodified	_DESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	HCT116MG_D190212_S2	2	493.214599609375	2	493.214703	984.414853	-0.046548	-2.2958E-05	0.66698	0.00032896	0.62043	0.00030601	493.21470719179774	18.398	0.36538	18.035	17.904	18.269	-0.36325					13	6	3	0	0	0	0.22303	1	6344	6344		69.105	29.148	1	14598000			5800	5705	3089	3120	5674	5674					-0.07797764626559456
DESRSTQY	8	Unmodified	_DESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	493.214703	984.414853	-0.065884	-3.2495E-05	2.5714	0.0012683	2.5055	0.0012358	493.2160370350393	17.686	0.31237	17.768	17.638	17.95	0.081358	-0.13345	0.0013836	NaN	69.105	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1569800			5801	5705	3089	3120							-0.07797764626559456
DESTGSIA	8	Unmodified	_DESTGSIA_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ALDOA|p.E156Rfs*45|1|0.04|ENSG00000149925|chr16:30068902-30068903|-/AA|frameshift_variant	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	HCT116MG_D190212_S2	2	779.3424682617188	1	779.341754	778.334478	0.8937	0.0006965	0.18591	0.00014488	1.0796	0.00084138	779.3417467347733	22.929	0.52025	22.544	22.362	22.882	-0.3852					14	9	2	0	0	0	0.32897	1	8150	8150		56.541	6.8724	1	35369000			5802	4075	3090	3121	5675	5675					-0.06355625949618116
DESTGSIA	8	Unmodified	_DESTGSIA_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ALDOA|p.E156Rfs*45|1|0.04|ENSG00000149925|chr16:30068902-30068903|-/AA|frameshift_variant	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	HCT116MG_D190212_S3	3	779.3421020507812	1	779.341754	778.334478	0.56363	0.00043926	0.25848	0.00020145	0.82212	0.00064071	779.3417931698399	22.744	0.50816	22.725	22.543	23.051	-0.018869					16	9	2	0	0	0	0.32897	1	8003	8003		56.541	6.8724	1	27545000			5803	4075	3090	3121	5676	5676					-0.06355625949618116
DESTGSIA	8	Unmodified	_DESTGSIA_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ALDOA|p.E156Rfs*45|1|0.04|ENSG00000149925|chr16:30068902-30068903|-/AA|frameshift_variant	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	779.341754	778.334478	0.81929	0.0006385	-0.055727	-4.3431E-05	0.76356	0.00059507	779.341601522691	22.715	0.26058	22.715	22.585	22.845	0	0.051949	-0.00019832	NaN	56.541	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4870000			5804	4075	3090	3121							-0.06355625949618116
DESTGSIA	8	Unmodified	_DESTGSIA_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ALDOA|p.E156Rfs*45|1|0.04|ENSG00000149925|chr16:30068902-30068903|-/AA|frameshift_variant	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	779.341754	778.334478	0.73738	0.00057467	0.57372	0.00044713	1.3111	0.0010218	779.3419238918992	22.905	0.41842	22.668	22.497	22.916	-0.23758	0.0047049	0.00029224	NaN	56.541	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6481800			5805	4075	3090	3121							-0.06355625949618116
DESVGNVTF	9	Unmodified	_DESVGNVTF_					0	0	0		IFNAR1|p.S62Ffs*11|1|0.21|ENSG00000142166|chr21:33335626-33335627|-/T|frameshift_variant;nc|ENSG00000142166|P17181-2|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1	IFNAR1|p.S62Ffs*11|1|0.21|ENSG00000142166|chr21:33335626-33335627|-/T|frameshift_variant	IFNAR1|p.S62Ffs*11|1|0.21|ENSG00000142166|chr21:33335626-33335627|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	967.4367065429688	1	967.436717	966.429441	0.79952	0.00077349	-0.82713	-0.0008002	-0.02761	-2.6711E-05	967.4358616825622	44.86	0.22977	44.55	44.451	44.68	-0.30927					7	4	2	0	0	0	0.027492	1	16804	16804		88.904	54.801	1	6096900			5806	3744	3091	3122	5677	5677					-0.05511692478421537
DESVGNVTF	9	Unmodified	_DESVGNVTF_					0	0	0		IFNAR1|p.S62Ffs*11|1|0.21|ENSG00000142166|chr21:33335626-33335627|-/T|frameshift_variant;nc|ENSG00000142166|P17181-2|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1	IFNAR1|p.S62Ffs*11|1|0.21|ENSG00000142166|chr21:33335626-33335627|-/T|frameshift_variant	IFNAR1|p.S62Ffs*11|1|0.21|ENSG00000142166|chr21:33335626-33335627|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	484.22222900390625	2	484.221997	966.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.985	1	44.676	44.176	45.176	-0.30927								0	0	0	0.59795	1	16830	16830		24.021	8.2524	1				5807	3744	3091	3122	5678	5678					-0.05511692478421537
DETAKKIQY	9	Unmodified	_DETAKKIQY_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	HCT116MG_D190212_S2	2	548.2883911132812	2	548.287671	1094.56079	0.60998	0.00033445	0.095869	5.2564E-05	0.70585	0.00038701	548.2877738436385	23.95	0.2596	23.567	23.456	23.715	-0.38324					6	4	2	0	0	0	0.51829	1	8600	8600		15.847	1.0089	1	5771200			5808	2733	3092	3123	5679	5679					0.01729117889499321
DETAKSFI	8	Unmodified	_DETAKSFI_					0	0	0		nc|ENSG00000101353|Q9H579|MROH8;MROH8|p.F768Lfs*38|1|0.13|ENSG00000101353|chr20:37120510-37120510|A/-|frameshift_variant;MROH8|p.N894Tfs*7|1|0.08|ENSG00000101353|chr20:37114081-37114081|T/-|frameshift_variant;nc|ENSG00000101353|Q9H579-2|MROH8;ENSG00000101353|ENST00000343811|MROH8	nc|ENSG00000101353|Q9H579|MROH8	nc|ENSG00000101353|Q9H579|MROH8	MSMS	HCT116MG_D190212_S3	3	455.7291259765625	2	455.729458	909.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.686	1	33.396	32.896	33.896	-0.29013								0	0	0	0.62515	1	12372	12372		36.127	5.9022	1				5809	1781	3093	3124	5680	5680					-0.013982006104129141
DETDLLFTD	9	Unmodified	_DETDLLFTD_					0	0	0		BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant	BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.7398681640625	2	534.740219	1067.46589	0.4224	0.00022587	-1.3038	-0.00069719	-0.88139	-0.00047131	534.7396542857663	16.259	1.4596	15.924	15.48	16.94	-0.33451					41	27	2	0	0	0	0.52876	1	5453	5453		10.824	0	1	6318200			5810	275	3094	3125	5681	5681					-0.06514860372362818
DETEARKY	8	Unmodified	_DETEARKY_					0	0	0		ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000496153.5_1_7:73097949-73108381:+|nuORF;nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENST00000421304.5_3_7:73097949-73098135:+|nuORF	ENSG00000071462|ENST00000265758|BUD23	ENSG00000071462|ENST00000265758|BUD23	MULTI-MSMS	HCT116MG_D190212_S1	1	506.2409973144531	2	506.240721	1010.46689	0.40296	0.000204	0.051538	2.6091E-05	0.4545	0.00023009	506.24067414220553	16.707	0.20813	16.707	16.577	16.785	0					7	3	3	0	0	0	0.065113	1	5646	5646		107.19	49.716	1	9916600			5811	1254	3095	3126	5682	5682					-0.03792601212808222
DETEARKY	8	Unmodified	_DETEARKY_					0	0	0		ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000496153.5_1_7:73097949-73108381:+|nuORF;nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENST00000421304.5_3_7:73097949-73098135:+|nuORF	ENSG00000071462|ENST00000265758|BUD23	ENSG00000071462|ENST00000265758|BUD23	MULTI-MSMS	HCT116MG_D190212_S2	2	506.2406005859375	2	506.240721	1010.46689	0.44544	0.0002255	-0.19504	-9.8735E-05	0.2504	0.00012676	506.24050817400536	17.093	0.46905	16.743	16.561	17.03	-0.34933					21	8	4	0	0	0	0.0044015	1	5802	5802		181.33	91.901	1	75358000			5812	1254	3095	3126	5683	5683					-0.03792601212808222
DETEARKY	8	Unmodified	_DETEARKY_					0	0	0		ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;ENST00000496153.5_1_7:73097949-73108381:+|nuORF;nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENST00000421304.5_3_7:73097949-73098135:+|nuORF	ENSG00000071462|ENST00000265758|BUD23	ENSG00000071462|ENST00000265758|BUD23	MULTI-MSMS	HCT116MG_D190212_S3	3	506.2406311035156	2	506.240721	1010.46689	0.23917	0.00012108	-0.35462	-0.00017952	-0.11545	-5.8443E-05	506.2404961536238	15.97	0.20794	16.055	15.925	16.133	0.085424					5	3	2	0	0	0	0.557	1	5289	5289		36.127	9.2434	1	2529500			5813	1254	3095	3126	5684	5684					-0.03792601212808222
DETEGALD	8	Unmodified	_DETEGALD_					0	0	0			REV__tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	REV__tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	849.3471069335938	1	849.347233	848.339957	0.70698	0.00060047	-0.74866	-0.00063588	-0.041684	-3.5404E-05	849.3464506023629	23.485	0.26097	23.485	23.314	23.575	0					6	4	2	0	0	0	0.12463	1	8377	8377		89.427	7.5627	1	5370500	+		5814	17990	3096	3127	5685	5685					-0.09027947157790095
DETEGALD	8	Unmodified	_DETEGALD_					0	0	0			REV__tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	REV__tr|U7T5T2|U7T5T2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00074PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	849.347233	848.339957	0.70698	0.00060047	-0.74866	-0.00063588	-0.041684	-3.5404E-05	849.3464506023629	23.485	0.26097	23.485	23.314	23.575	0	-0.014848	-0.00056149	NaN	89.427	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5370500	+		5815	17990	3096	3127							-0.09027947157790095
DETELARQM	9	Unmodified	_DETELARQM_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MSMS	HCT116MG_D190212_S3	3	546.7542724609375	2	546.753138	1091.49172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.262	1	32.972	32.472	33.472	-0.29013								0	0	0	0.012293	1	12201	12201		103.35	44.675	1				5816	3259	3097	3128	5686	5686					-0.05036289401732574
DETGAYLI	8	Unmodified	_DETGAYLI_					0	0	0		ENST00000570005.5_1_16:2732549-2747193:+|nuORF;ENST00000399702.5_1_16:2660819-2678872:+|nuORF;ENSG00000167977|ENST00000301738|KCTD5;ENSG00000180901|ENST00000322444|KCTD2;nc|ENSG00000100379|Q8N5Z5-2|KCTD17;ENSG00000100379|ENST00000403888|KCTD17	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	881.4257202148438	1	881.42509	880.417813	0.66465	0.00058584	-0.23435	-0.00020656	0.4303	0.00037927	881.4247672692557	49.683	0.36509	49.367	49.184	49.549	-0.31596					11	6	2	0	0	0	0.19622	1	18724	18724		74.396	17.855	1	13706000			5817	1701	3098	3129	5687	5687					-0.027178895017527793
DETHNVYSL	9	Unmodified	_DETHNVYSL_					0	0	0			REV__CDK14|p.A392T|1|0.31|ENSG00000058091|chr7:91112561-91112561|G/A|missense_variant	REV__CDK14|p.A392T|1|0.31|ENSG00000058091|chr7:91112561-91112561|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	538.7828979492188	2	539.246003	1076.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.254	1	19.875	19.375	20.375	-0.37949								0	0	0	0.44802	1	7070	7070		31.268	17.362	1		+		5818	10141	3099	3130	5688	5688					-0.057726185583760525
DETHRHIAHY	10	Unmodified	_DETHRHIAHY_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	HCT116MG_D190212_S1	1	640.1160278320312	2	639.802343	1277.59013	0.75904	0.00048564	-0.75462	-0.00048281	0.0044206	2.8283E-06	639.8015642913724	33.582	0.20721	33.582	33.452	33.659	0					6	3	2	0	0	0	0.81435	1	12385	12385		10.824	5.0921	1	8099300	+		5819	12960	3100	3131	5689	5689					-0.03755925041673436
DETIHIYDM	9	Unmodified	_DETIHIYDM_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1;PAK1IP1|p.F230Lfs*6|1|0.2|ENSG00000111845|chr6:10704789-10704789|T/-|frameshift_variant	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	HCT116MG_D190212_S2	2	568.7507934570312	2	568.750064	1135.48558	0.62614	0.00035612	0.33979	0.00019326	0.96593	0.00054937	568.7503143773245	47.129	0.25876	47.007	46.871	47.13	-0.12175					9	4	3	0	0	0	0.0060607	1	17998	17998		128.37	83.958	1	22277000			5820	2318	3101	3132	5690	5690					-0.07674807633270575
DETIHIYDM	9	Unmodified	_DETIHIYDM_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1;PAK1IP1|p.F230Lfs*6|1|0.2|ENSG00000111845|chr6:10704789-10704789|T/-|frameshift_variant	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	568.750064	1135.48558	0.39956	0.00022725	1.1631	0.0006615	1.5626	0.00088876	568.7502354802599	47.036	0.1553	47.036	46.958	47.114	0	0.014368	0.0009122	NaN	128.37	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6443600			5821	2318	3101	3132							-0.07674807633270575
DETIVVGM	8	Unmodified	_DETIVVGM_					0	0	0		nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15;ENST00000512550.1_1_5:72868339-72873863:+|nuORF	nc|ENSG00000164338|Q8TED0-2|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-MSMS	HCT116MG_D190212_S2	2	863.4183959960938	1	863.417896	862.410619	0.76459	0.00066016	-0.39248	-0.00033887	0.37211	0.00032129	863.4176204670669	46.144	0.36055	46.043	45.863	46.223	-0.1014					11	6	2	0	0	0	0.060038	1	17554	17554		112.56	29.619	1	34909000			5822	4691	3102	3133	5691	5691					-0.0260894537382228
DETIVVGM	8	Unmodified	_DETIVVGM_					0	0	0		nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15;ENST00000512550.1_1_5:72868339-72873863:+|nuORF	nc|ENSG00000164338|Q8TED0-2|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-MSMS	HCT116MG_D190212_S3	3	863.41748046875	1	863.417896	862.410619	1.0238	0.00088397	-0.31452	-0.00027156	0.70928	0.00061241	863.4175207761784	46.358	0.55721	46.046	45.882	46.439	-0.31237					22	12	3	0	0	0	0.060038	1	17369	17369		112.56	26.437	1	27104000			5823	4691	3102	3133	5692	5692					-0.0260894537382228
DETIVVGM	8	Unmodified	_DETIVVGM_					0	0	0		nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15;ENST00000512550.1_1_5:72868339-72873863:+|nuORF	nc|ENSG00000164338|Q8TED0-2|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-MSMS	HCT116MG_D190212_S4	4	863.4169921875	1	863.417896	862.410619	0.84626	0.00073068	-0.0041724	-3.6025E-06	0.84209	0.00072708	863.417491998939	46.357	0.45444	45.986	45.874	46.328	-0.37134					19	14	2	0	0	0	0.083541	1	17126	17126		98.807	24.411	1	7946100			5824	4691	3102	3133	5693	5693					-0.0260894537382228
DETLIHSH	8	Unmodified	_DETLIHSH_					0	0	0		ENSG00000175826|ENST00000574322|CTDNEP1	ENSG00000175826|ENST00000574322|CTDNEP1	ENSG00000175826|ENST00000574322|CTDNEP1	MULTI-MSMS	HCT116MG_D190212_S2	2	476.23046875	2	476.230156	950.445759	0.48224	0.00022966	1.8839	0.00089715	2.3661	0.0011268	476.2303510277702	24.148	0.20779	23.768	23.666	23.874	-0.38003					7	3	3	0	0	0	0.21487	1	8667	8667		70.716	34.671	1	5592900			5825	5397	3103	3134	5694	5694					-0.031445665216665475
DETLIHSH	8	Unmodified	_DETLIHSH_					0	0	0		ENSG00000175826|ENST00000574322|CTDNEP1	ENSG00000175826|ENST00000574322|CTDNEP1	ENSG00000175826|ENST00000574322|CTDNEP1	MSMS	HCT116MG_D190212_S3	3	476.35968017578125	2	476.230156	950.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.653	1	23.614	23.114	24.114	-0.03968								0	0	0	0.54805	1	8362	8362		40.449	25.867	1				5826	5397	3103	3134	5695	5695					-0.031445665216665475
DETLIHSH	8	Unmodified	_DETLIHSH_					0	0	0		ENSG00000175826|ENST00000574322|CTDNEP1	ENSG00000175826|ENST00000574322|CTDNEP1	ENSG00000175826|ENST00000574322|CTDNEP1	MSMS	HCT116MG_D190212_S4	4	476.3595886230469	2	476.230156	950.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.988	1	23.73	23.23	24.23	-0.25816								0	0	0	0.8396	1	8428	8428		19.439	10.092	1				5827	5397	3103	3134	5696	5696					-0.031445665216665475
DETMVIGNY	9	Unmodified	_DETMVIGNY_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000507723.1_1_5:177019275-177020791:+|nuORF;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4;nc|ENSG00000158604|Q7Z7H5-3|TMED4	ENSG00000184840|ENST00000332598|TMED9;nc|ENSG00000158604|Q7Z7H5-3|TMED4	ENSG00000184840|ENST00000332598|TMED9	MULTI-MSMS	HCT116MG_D190212_S3	3	521.2315673828125	2	521.231507	1040.44846	0.4144	0.000216	-0.12646	-6.5915E-05	0.28794	0.00015008	521.2313938527756	45.086	0.92119	44.777	44.489	45.41	-0.30927					22	17	2	0	0	0	0.21251	1	16855	16855		39.957	11.47	1	4676600			5828	5783;9510	3104	3135	5697	5697					-0.07014479179019872
DETRTDCDPQ	10	Unmodified	_DETRTDCDPQ_					0	0	0			REV__ZNF16|p.Y472Qfs*111|1|0.19|ENSG00000170631|chr8:144931377-144931378|-/AAGTCTGGTGCTTCCTCAGGTGTGCACTCTGGCTG|frameshift_variant	REV__ZNF16|p.Y472Qfs*111|1|0.19|ENSG00000170631|chr8:144931377-144931378|-/AAGTCTGGTGCTTCCTCAGGTGTGCACTCTGGCTG|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	590.3221435546875	2	590.232767	1178.45098	0.64913	0.00038313	0.14512	8.5652E-05	0.79424	0.00046879	590.2327036494818	27.853	0.26035	27.853	27.644	27.904	0					6	4	2	0	0	0	0.30895	1	10055	10055		1.3295	0	1	3975700	+		5829	13312	3105	3136	5698	5698					-0.1311067551200722
DETRTIISL	9	Unmodified	_DETRTIISL_					0	0	0		AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant;ENSG00000018510|ENST00000264167|AGPS	AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant	AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	524.28759765625	2	524.287671	1046.56079	0.71366	0.00037416	-0.5871	-0.00030781	0.12656	6.6355E-05	524.2874051149324	48.689	0.25669	48.373	48.192	48.449	-0.31596					7	4	2	0	0	0	0.082877	1	18327	18327		61.602	9.9721	1	10138000			5830	79	3106	3137	5699	5699					0.03937117889495312
DETTVRKL	8	Unmodified	_DETTVRKL_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MSMS	HCT116MG_D190212_S3	3	481.26910400390625	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.159	1	23.119	22.619	23.619	-0.03968								0	0	0	0.0014412	1	8162	8162		118.89	19.096	1				5831	3076	3107	3138	5700	5700					0.04216866063575253
DETTVRKL	8	Unmodified	_DETTVRKL_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MULTI-MSMS	HCT116MG_D190212_S4	4	481.26898193359375	2	481.269281	960.52401	0.10925	5.2581E-05	1.5213	0.00073216	1.6306	0.00078474	481.2690947911831	23.404	0.31331	23.156	22.958	23.272	-0.24775					8	5	2	0	0	0	0.065113	1	8215	8215		107.19	7.3881	1	3765700			5832	3076	3107	3138	5701	5701					0.04216866063575253
DETVTVVL	8	Unmodified	_DETVTVVL_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-MSMS	HCT116MG_D190212_S1	1	875.47314453125	1	875.47204	874.464763	0.65202	0.00057082	0.51887	0.00045425	1.1709	0.0010251	875.4720060912838	49.517	0.2582	49.517	49.389	49.647	0					6	4	2	0	0	0	0.32897	1	18905	18905		56.541	6.8724	1	10076000			5833	1065	3108	3139	5702	5702					0.022509700493856144
DEVAFRKF	8	Unmodified	_DEVAFRKF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF;ENST00000443616.1_1_1:119669641-119669854:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	HCT116MG_D190212_S1	1	506.26678466796875	2	506.266542	1010.51853	0.37148	0.00018807	-0.046266	-2.3423E-05	0.32522	0.00016465	506.26657275655333	36.265	0.31944	36.265	36.098	36.417	0					8	5	2	0	0	0	0.061239	1	13524	13524		111.29	67.429	1	13012000			5834	3910	3109	3140	5703	5703					0.01369187271757255
DEVAFRKF	8	Unmodified	_DEVAFRKF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF;ENST00000443616.1_1_1:119669641-119669854:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	HCT116MG_D190212_S2	2	506.2668151855469	2	506.266542	1010.51853	0.63152	0.00031972	0.1595	8.0748E-05	0.79101	0.00040046	506.2665417658387	36.328	0.31121	36.2	36.019	36.33	-0.12799					12	5	3	0	0	0	0.030564	1	13585	13585		144.35	82.993	1	157280000			5835	3910	3109	3140	5704	5704					0.01369187271757255
DEVAFRKF	8	Unmodified	_DEVAFRKF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF;ENST00000443616.1_1_1:119669641-119669854:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	HCT116MG_D190212_S3	3	506.2667236328125	2	506.266542	1010.51853	0.080824	4.0918E-05	0.36387	0.00018421	0.44469	0.00022513	506.266561997599	36.478	0.26031	36.177	36.041	36.301	-0.30113					11	4	3	0	0	0	0.038852	1	13488	13488		136.33	84.065	1	24655000			5836	3910	3109	3140	5705	5705					0.01369187271757255
DEVAFRKF	8	Unmodified	_DEVAFRKF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF;ENST00000443616.1_1_1:119669641-119669854:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	HCT116MG_D190212_S4	4	506.2664794921875	2	506.266542	1010.51853	0.27166	0.00013753	0.31842	0.0001612	0.59008	0.00029874	506.2666246113178	36.624	0.36073	36.239	36.074	36.435	-0.38486					11	6	3	0	0	0	0.079196	1	13418	13418		99.799	67.493	1	8049300			5837	3910	3109	3140	5706	5706					0.01369187271757255
DEVDKVNQY	9	Unmodified	_DEVDKVNQY_					0	0	0		nc|ENSG00000198825|Q9Y2H2-4|INPP5F;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;ENSG00000198825|ENST00000650623|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	MULTI-MSMS	HCT116MG_D190212_S1	1	555.2591552734375	2	555.259111	1108.50367	0.48594	0.00026983	-0.60136	-0.00033391	-0.11542	-6.4086E-05	555.2589191127279	25.715	0.57457	25.715	25.405	25.98	0					20	10	3	0	0	0	0.011082	2	9277	9277;9340		110.67	62.926	1	17837000			5838	6278	3110	3141	5707;5708	5707					-0.04624349386904214
DEVDKVNQY	9	Unmodified	_DEVDKVNQY_					0	0	0		nc|ENSG00000198825|Q9Y2H2-4|INPP5F;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;ENSG00000198825|ENST00000650623|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	MULTI-MSMS	HCT116MG_D190212_S2	2	555.7604370117188	2	555.259111	1108.50367	0.5478	0.00030417	-0.41136	-0.00022841	0.13644	7.5758E-05	555.2589554885077	26.043	0.67408	25.674	25.343	26.017	-0.36914					35	12	4	0	0	0	0.35128	1	9495	9495		25.399	12.868	1	80532000			5839	6278	3110	3141	5709	5709					-0.04624349386904214
DEVDKVNQY	9	Unmodified	_DEVDKVNQY_					0	0	0		nc|ENSG00000198825|Q9Y2H2-4|INPP5F;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;ENSG00000198825|ENST00000650623|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	MULTI-MSMS	HCT116MG_D190212_S3	3	555.2590942382812	2	555.259111	1108.50367	0.5274	0.00029284	-0.34699	-0.00019267	0.18041	0.00010017	555.2588214298825	25.914	0.46947	25.786	25.598	26.068	-0.12795					22	8	4	0	0	0	0.0012137	1	9294	9294		191.38	116.45	1	19615000			5840	6278	3110	3141	5710	5710					-0.04624349386904214
DEVDKVNQY	9	Unmodified	_DEVDKVNQY_					0	0	0		nc|ENSG00000198825|Q9Y2H2-4|INPP5F;INPP5F|p.A917Qfs*71|1|0.07|ENSG00000198825|chr10:119827129-119827130|-/CAGAGTG|frameshift_variant;ENSG00000198825|ENST00000650623|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	MULTI-MSMS	HCT116MG_D190212_S4	4	555.25927734375	2	555.259111	1108.50367	0.37753	0.00020963	-0.15754	-8.7475E-05	0.21999	0.00012215	555.2590230432525	26.092	0.20823	25.802	25.672	25.88	-0.29022					6	3	2	0	0	0	0.21258	1	9305	9305		39.95	20.693	1	5205500			5841	6278	3110	3141	5711	5711					-0.04624349386904214
DEVELIHF	8	Unmodified	_DEVELIHF_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.R847W|1|0.45|ENSG00000092201|chr14:21357318-21357318|G/A|missense_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S1	1	501.25103759765625	2	501.250557	1000.48656	0.487	0.00024411	0.33357	0.0001672	0.82058	0.00041131	501.25062709941506	54.258	0.25604	54.258	54.077	54.333	0					13	4	4	0	0	0	0.19622	1	20801	20801		74.396	24.727	1	340610000			5842	1578	3111	3142	5712	5712					-0.013662252020367305
DEVELIHF	8	Unmodified	_DEVELIHF_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.R847W|1|0.45|ENSG00000092201|chr14:21357318-21357318|G/A|missense_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S1	1	1001.494384765625	1	1001.49384	1000.48656	0.85212	0.00085339	-0.044583	-4.465E-05	0.80754	0.00080874	1001.4938367771317	54.257	0.25604	54.257	54.077	54.333	0					9	4	3	0	0	0	0.020003	1	20811	20811		153.26	54.455	1	83282000			5843	1578	3111	3142	5713	5713					-0.013662252020367305
DEVELIHF	8	Unmodified	_DEVELIHF_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.R847W|1|0.45|ENSG00000092201|chr14:21357318-21357318|G/A|missense_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2507019042969	2	501.250557	1000.48656	0.43658	0.00021883	-0.18468	-9.2569E-05	0.2519	0.00012627	501.25045410772174	54.467	0.45947	54.278	54.099	54.559	-0.1894					29	8	5	0	0	0	0.050259	1	20971	20971		123.1	36.975	1	1728799999.9999998			5844	1578	3111	3142	5714	5714					-0.013662252020367305
DEVELIHF	8	Unmodified	_DEVELIHF_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.R847W|1|0.45|ENSG00000092201|chr14:21357318-21357318|G/A|missense_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S2	2	1001.4943237304688	1	1001.49384	1000.48656	0.54141	0.00054222	0.15375	0.00015398	0.69516	0.0006962	1001.4938118691038	54.467	0.35654	54.278	54.099	54.456	-0.1894					17	6	4	0	0	0	0.0057235	1	20975	20975		170.4	71.59	1	591030000			5845	1578	3111	3142	5715	5715					-0.013662252020367305
DEVELIHF	8	Unmodified	_DEVELIHF_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.R847W|1|0.45|ENSG00000092201|chr14:21357318-21357318|G/A|missense_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S3	3	501.250732421875	2	501.250557	1000.48656	0.40986	0.00020544	-0.017637	-8.8406E-06	0.39222	0.0001966	501.2504946671669	54.617	0.52274	54.321	54.138	54.661	-0.29587					24	9	5	0	0	0	0.065436	1	20700	20700		106.85	28.401	1	197750000			5846	1578	3111	3142	5716	5716					-0.013662252020367305
DEVELIHF	8	Unmodified	_DEVELIHF_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.R847W|1|0.45|ENSG00000092201|chr14:21357318-21357318|G/A|missense_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S3	3	1001.494140625	1	1001.49384	1000.48656	0.53415	0.00053495	0.048406	4.8478E-05	0.58255	0.00058342	1001.4938008190285	54.617	0.26147	54.321	54.19	54.452	-0.29587					13	4	4	0	0	0	0.0057235	1	20703	20703		170.4	71.59	1	39412000			5847	1578	3111	3142	5717	5717					-0.013662252020367305
DEVELIHF	8	Unmodified	_DEVELIHF_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.R847W|1|0.45|ENSG00000092201|chr14:21357318-21357318|G/A|missense_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S4	4	501.2508239746094	2	501.250557	1000.48656	0.45409	0.00022761	-0.012023	-6.0266E-06	0.44207	0.00022159	501.25043738661736	54.595	0.31255	54.271	54.14	54.453	-0.32348					15	5	4	0	0	0	0.044999	1	20427	20427		129.2	30.393	1	35561000			5848	1578	3111	3142	5718	5718					-0.013662252020367305
DEVELIHF	8	Unmodified	_DEVELIHF_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.R847W|1|0.45|ENSG00000092201|chr14:21357318-21357318|G/A|missense_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S4	4	1001.4946899414062	1	1001.49384	1000.48656	0.69735	0.00069839	-0.13613	-0.00013633	0.56122	0.00056206	1001.4940291827377	54.629	0.1562	54.306	54.192	54.348	-0.32349					4	2	2	0	0	0	0.057785	1	20445	20445		114.94	36.499	1	4571300			5849	1578	3111	3142	5719	5719					-0.013662252020367305
DEVFFSEKIY	10	Unmodified	_DEVFFSEKIY_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	638.8085327148438	2	638.808436	1275.60232	0.65393	0.00041774	-0.043636	-2.7875E-05	0.6103	0.00038986	638.8083316565566	51.889	0.21278	51.889	51.756	51.968	0					9	3	3	0	0	0	0.010309	1	19846	19846		147.24	121.84	1	32771000			5850	1002	3112	3143	5720	5720					-0.024457461418478488
DEVFFSEKIY	10	Unmodified	_DEVFFSEKIY_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	638.8090209960938	2	638.808436	1275.60232	0.72959	0.00046607	0.38587	0.0002465	1.1155	0.00071257	638.8084875305206	52.199	0.36135	52.012	51.832	52.193	-0.18725					17	6	4	0	0	0	0.0081677	1	20050	20050		159.1	133.7	1	133530000			5851	1002	3112	3143	5721	5721					-0.024457461418478488
DEVHAVGL	8	Unmodified	_DEVHAVGL_					0	0	0		ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1;ENST00000498636.1_1_X:55035677-55046849:-|nuORF;nc|ENSG00000158578|P22557-3|ALAS2;nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2;ENSG00000158578|ENST00000650242|ALAS2	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	420.21630859375	2	420.216517	838.418482	0.04575	1.9225E-05	-0.19738	-8.2941E-05	-0.15163	-6.3716E-05	420.21632215252583	36.897	0.25768	36.782	36.602	36.859	-0.11478					7	4	2	0	0	0	0.43493	1	13839	13839		46.921	6.4723	1	18828000			5852	91	3113	3144	5722	5722					-0.007190500620367857
DEVHAVGL	8	Unmodified	_DEVHAVGL_					0	0	0		ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1;ENST00000498636.1_1_X:55035677-55046849:-|nuORF;nc|ENSG00000158578|P22557-3|ALAS2;nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2;ENSG00000158578|ENST00000650242|ALAS2	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	420.216517	838.418482	0.086782	3.6467E-05	-0.15971	-6.7111E-05	-0.072925	-3.0644E-05	420.21640054372847	37.044	0.26027	36.743	36.613	36.873	-0.30113	-0.019445	6.114E-06	NaN	46.921	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3188600			5853	91	3113	3144							-0.007190500620367857
DEVIGQVL	8	Unmodified	_DEVIGQVL_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	HCT116MG_D190212_S4	4	872.4746704101562	1	872.472374	871.465098	0.62133	0.00054209	0.1883	0.00016429	0.80963	0.00070638	872.4724791910792	49.193	0.30629	48.828	48.659	48.965	-0.365					11	5	3	0	0	0	0.001777	1	18234	18234		179.23	24.766	1	10668000			5854	1255	3114	3145	5723	5723					0.024223897692422725
DEVIIEQF	8	Unmodified	_DEVIIEQF_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	HCT116MG_D190212_S2	2	992.4943237304688	1	992.493504	991.486227	0.68551	0.00068036	-0.30607	-0.00030377	0.37944	0.00037659	992.493061522514	52.921	0.36058	52.732	52.553	52.913	-0.18922					11	6	2	0	0	0	0.41924	1	20347	20347		48.346	18.121	1	35655000			5855	3372	3115	3146	5724	5724					-0.009856449219000751
DEVIIEQF	8	Unmodified	_DEVIIEQF_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	HCT116MG_D190212_S3	3	992.494140625	1	992.493504	991.486227	0.79446	0.0007885	-0.20698	-0.00020543	0.58748	0.00058307	992.4932117995038	53.102	0.47052	52.799	52.617	53.087	-0.30305					18	8	3	0	0	0	0.12463	1	20077	20077		89.427	32.886	1	14674000			5856	3372	3115	3146	5725	5725					-0.009856449219000751
DEVIIEQF	8	Unmodified	_DEVIIEQF_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	HCT116MG_D190212_S3	3	496.7507629394531	2	496.75039	991.486227	0.50638	0.00025155	-0.19754	-9.8129E-05	0.30884	0.00015342	496.7502962628906	53.065	0.31388	52.762	52.617	52.931	-0.30304					12	5	3	0	0	0	0.46267	1	20094	20094		44.407	14.182	1	5407400			5857	3372	3115	3146	5726	5726					-0.009856449219000751
DEVIIEQF	8	Unmodified	_DEVIIEQF_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	HCT116MG_D190212_S4	4	992.4945678710938	1	992.493504	991.486227	0.63655	0.00063177	-0.040771	-4.0465E-05	0.59578	0.0005913	992.4936039631867	53.118	0.36408	52.783	52.619	52.983	-0.33473					14	6	3	0	0	0	0.10976	1	19813	19813		92.822	32.433	1	8084500			5858	3372	3115	3146	5727	5727					-0.009856449219000751
DEVIIEQF	8	Unmodified	_DEVIIEQF_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	HCT116MG_D190212_S4	4	496.75042724609375	2	496.75039	991.486227	0.46533	0.00023115	-0.37052	-0.00018405	0.094809	4.7097E-05	496.7502412413038	53.116	0.25982	52.781	52.619	52.879	-0.33473					7	4	2	0	0	0	0.55794	1	19836	19836		36.044	3.9272	1	3485900			5859	3372	3115	3146	5728	5728					-0.009856449219000751
DEVIITGY	8	Unmodified	_DEVIITGY_					0	0	0		ENST00000559217.1_1_15:80469766-80478548:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH	ENST00000559217.1_1_15:80469766-80478548:+|nuORF	ENST00000559217.1_1_15:80469766-80478548:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	909.45751953125	1	909.45639	908.449113	0.84154	0.00076534	-0.21554	-0.00019602	0.626	0.00056932	909.456468252867	44.999	0.26202	44.906	44.787	45.049	-0.092476					6	4	2	0	0	0	0.12463	1	17124	17124		89.427	7.5627	1	9898900			5860	1909	3116	3147	5729	5729					-0.008773164676654233
DEVIITGY	8	Unmodified	_DEVIITGY_					0	0	0		ENST00000559217.1_1_15:80469766-80478548:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH	ENST00000559217.1_1_15:80469766-80478548:+|nuORF	ENST00000559217.1_1_15:80469766-80478548:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	909.4571533203125	1	909.45639	908.449113	0.74627	0.0006787	0.3856	0.00035069	1.1319	0.0010294	909.4564688751203	45.21	0.36525	44.901	44.732	45.098	-0.30927					12	6	3	0	0	0	0.10511	1	16932	16932		93.883	15.899	1	8061900			5861	1909	3116	3147	5730	5730					-0.008773164676654233
DEVIITGY	8	Unmodified	_DEVIITGY_					0	0	0		ENST00000559217.1_1_15:80469766-80478548:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH	ENST00000559217.1_1_15:80469766-80478548:+|nuORF	ENST00000559217.1_1_15:80469766-80478548:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	909.456787109375	1	909.45639	908.449113	0.75198	0.00068389	0.045779	4.1634E-05	0.79776	0.00072553	909.4562609026624	45.282	0.30412	44.91	44.735	45.039	-0.37266					9	5	2	0	0	0	0.15838	1	16689	16689		81.864	7.4677	1	5561200			5862	1909	3116	3147	5731	5731					-0.008773164676654233
DEVKAHLL	8	Unmodified	_DEVKAHLL_					0	0	0		ENST00000554467.5_1_12:57626145-57626750:+|nuORF;SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000554467.5_1_12:57626145-57626750:+|nuORF	ENST00000554467.5_1_12:57626145-57626750:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	462.76123046875	2	462.761092	923.507631	0.39904	0.00018466	0.11009	5.0944E-05	0.50913	0.0002356	462.7610734068912	33.983	0.2604	33.689	33.507	33.767	-0.29419					7	4	2	0	0	0	0.2477	1	12498	12498		64.236	22.142	1	4235100			5863	5661	3117	3148	5732	5732					0.04281784897466423
DEVKAHLL	8	Unmodified	_DEVKAHLL_					0	0	0		ENST00000554467.5_1_12:57626145-57626750:+|nuORF;SHMT2|p.H328Tfs*8|1|0.54|ENSG00000182199|chr12:57233300-57233300|C/-|frameshift_variant;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000554467.5_1_12:57626145-57626750:+|nuORF	ENST00000554467.5_1_12:57626145-57626750:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	462.761092	923.507631	0.25523	0.00011811	-0.13596	-6.2918E-05	0.11927	5.5193E-05	462.7608951097467	33.858	0.20805	33.665	33.534	33.742	-0.19297	-0.012166	-0.00018204	NaN	64.236	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10340000			5864	5661	3117	3148							0.04281784897466423
DEVKISSA	8	Unmodified	_DEVKISSA_					0	0	0		ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	MULTI-MSMS	HCT116MG_D190212_S2	2	424.72198486328125	2	424.721633	847.428712	0.12618	5.3593E-05	0.051827	2.2012E-05	0.17801	7.5605E-05	424.7216319983233	24.894	0.25916	24.519	24.4	24.66	-0.37521					6	4	2	0	0	0	0.22303	1	8965	8965		69.105	29.148	1	7015300			5865	2643	3118	3149	5733	5733					-0.0011048712747196987
DEVKKVRKRTH	11	Unmodified	_DEVKKVRKRTH_					0	0	0		CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.M1226Wfs*13|1|0.22|ENSG00000164309|chr5:79732436-79732436|A/-|frameshift_variant;CMYA5|p.K1823Rfs*17|2|0.34|ENSG00000164309|chr5:79734227-79734227|A/-|frameshift_variant;CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	465.94598388671875	3	465.944153	1394.81063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.432	1	51.12	50.62	51.62	-0.31166								0	0	0	0.95954	1	19419	19419		0.45452	0.046251	1				5866	488	3119	3150	5734	5734					0.12901720285731244
DEVKLIGF	8	Unmodified	_DEVKLIGF_					0	0	0		ENSG00000198648|ENST00000355999|STK39;ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-MSMS	HCT116MG_D190212_S1	1	460.7582702636719	2	460.758018	919.501483	0.20416	9.4067E-05	0.091304	4.2069E-05	0.29546	0.00013614	460.75793319710266	52.82	0.30902	52.82	52.639	52.948	0					8	5	2	0	0	0	0.061239	1	20214	20214		111.29	25.166	1	37683000			5867	6249	3120	3151	5735	5735					0.03851266665969888
DEVKLIGF	8	Unmodified	_DEVKLIGF_					0	0	0		ENSG00000198648|ENST00000355999|STK39;ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-MSMS	HCT116MG_D190212_S2	2	460.7580871582031	2	460.758018	919.501483	0.08342	3.8437E-05	0.1094	5.0408E-05	0.19282	8.8844E-05	460.7579645137464	52.973	0.56813	52.784	52.604	53.172	-0.18922					29	10	4	0	0	0	0.061239	1	20362	20362		111.29	25.166	1	206840000			5868	6249	3120	3151	5736	5736					0.03851266665969888
DEVKLIGF	8	Unmodified	_DEVKLIGF_					0	0	0		ENSG00000198648|ENST00000355999|STK39;ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-MSMS	HCT116MG_D190212_S2	2	920.5093383789062	1	920.50876	919.501483	0.72009	0.00066285	-0.10018	-9.2214E-05	0.61991	0.00057064	920.5085673530982	53.024	0.46548	52.835	52.604	53.07	-0.18922					21	8	4	0	0	0	0.038852	1	20368	20368		136.33	43.511	1	108650000			5869	6249	3120	3151	5737	5737					0.03851266665969888
DEVKLIGF	8	Unmodified	_DEVKLIGF_					0	0	0		ENSG00000198648|ENST00000355999|STK39;ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-MSMS	HCT116MG_D190212_S3	3	460.7580871582031	2	460.758018	919.501483	0.60462	0.00027858	-0.21378	-9.8502E-05	0.39083	0.00018008	460.75780933262547	53.207	0.47059	52.904	52.721	53.192	-0.30305					23	8	4	0	0	0	0.061239	1	20134	20134		111.29	25.166	1	33744000			5870	6249	3120	3151	5738	5738					0.03851266665969888
DEVKLIGF	8	Unmodified	_DEVKLIGF_					0	0	0		ENSG00000198648|ENST00000355999|STK39;ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-MSMS	HCT116MG_D190212_S3	3	920.5090942382812	1	920.50876	919.501483	0.99327	0.00091432	-0.25515	-0.00023487	0.73812	0.00067945	920.5082279823553	53.244	0.31392	52.941	52.773	53.087	-0.30304					13	5	3	0	0	0	0.061239	1	20137	20137		111.29	18.465	1	11757000			5871	6249	3120	3151	5739	5739					0.03851266665969888
DEVKLIGF	8	Unmodified	_DEVKLIGF_					0	0	0		ENSG00000198648|ENST00000355999|STK39;ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-MSMS	HCT116MG_D190212_S4	4	460.7575988769531	2	460.758018	919.501483	0.13285	6.1212E-05	0.071273	3.284E-05	0.20412	9.4052E-05	460.7579069088277	53.292	0.31271	52.957	52.774	53.087	-0.33473					14	5	3	0	0	0	0.094591	1	19878	19878		96.285	10.163	1	12508000			5872	6249	3120	3151	5740	5740					0.03851266665969888
DEVKLIGF	8	Unmodified	_DEVKLIGF_					0	0	0		ENSG00000198648|ENST00000355999|STK39;ENST00000487143.5_1_2:168812008-168969496:-|nuORF;nc|ENSG00000198648|Q9UEW8-2|STK39	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-MSMS	HCT116MG_D190212_S4	4	920.5098266601562	1	920.50876	919.501483	0.79022	0.00072741	0.030913	2.8456E-05	0.82114	0.00075586	920.5086466114807	53.259	0.20847	52.925	52.827	53.035	-0.33473					5	3	2	0	0	0	0.094591	1	19897	19897		96.285	21.888	1	3232400			5873	6249	3120	3151	5741	5741					0.03851266665969888
DEVKLPAKL	9	Unmodified	_DEVKLPAKL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	506.80535888671875	2	506.8055	1011.59645	0.29504	0.00014953	-0.50622	-0.00025656	-0.21118	-0.00010703	506.8051329348143	38.286	0.25824	38.193	38.063	38.322	-0.09301					6	4	2	0	0	0	0.0096585	1	14394	14394		114.19	68.487	1	20608000			5874	5458	3121	3152	5742	5742					0.0911120013714708
DEVKLPAKL	9	Unmodified	_DEVKLPAKL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	506.8057556152344	2	506.8055	1011.59645	0.16167	8.1936E-05	-0.027655	-1.4016E-05	0.13402	6.792E-05	506.8054941834798	38.575	0.20793	38.274	38.144	38.352	-0.30137					6	3	2	0	0	0	0.037825	1	14308	14308		80.676	38.72	1	5953000			5875	5458	3121	3152	5743	5743					0.0911120013714708
DEVKLPAKL	9	Unmodified	_DEVKLPAKL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	HCT116MG_D190212_S4	4	506.8052978515625	2	506.8055	1011.59645	0.065637	3.3265E-05	-0.26891	-0.00013628	-0.20327	-0.00010302	506.8051872648627	38.639	0.19338	38.258	38.142	38.336	-0.38163					5	3	2	0	0	0	0.35842	1	14199	14199		24.991	12.459	1	1896700			5876	5458	3121	3152	5744	5744					0.0911120013714708
DEVKSTIKF	9	Unmodified	_DEVKSTIKF_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000427498.1_1_1:242528894-242529077:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7931518554688	2	533.792589	1065.57063	0.48239	0.00025749	-0.064573	-3.4469E-05	0.41781	0.00022303	533.7924998796328	35.47	0.31046	35.47	35.267	35.578	0					14	5	4	0	0	0	0.0045072	1	13196	13196		143.21	77.978	1	25934000			5877	6266	3122	3153	5745	5745					0.04046305894848956
DEVKSTIKF	9	Unmodified	_DEVKSTIKF_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000427498.1_1_1:242528894-242529077:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7925415039062	2	533.792589	1065.57063	0.3649	0.00019478	-0.123	-6.5658E-05	0.24189	0.00012912	533.7923474275187	35.503	0.29894	35.361	35.19	35.489	-0.14245					15	5	4	0	0	0	0.0037246	1	13246	13246		154.75	89.518	1	231380000			5878	6266	3122	3153	5746	5746					0.04046305894848956
DEVKSTIKF	9	Unmodified	_DEVKSTIKF_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000427498.1_1_1:242528894-242529077:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S4	4	533.7926025390625	2	533.792589	1065.57063	0.68984	0.00036823	-0.3708	-0.00019793	0.31904	0.0001703	533.7921220406417	35.828	0.21457	35.442	35.357	35.572	-0.38606					18	8	3	0	0	0	0.060947	2	13083	13072;13083		69.338	43.07	1	12085000			5879	6266	3122	3153	5747;5748	5748					0.04046305894848956
DEVLFTGV	8	Unmodified	_DEVLFTGV_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MULTI-MSMS	HCT116MG_D190212_S2	2	879.4454345703125	1	879.445825	878.438549	0.76572	0.00067341	-0.034624	-3.045E-05	0.73109	0.00064296	879.4455035939231	53.954	0.36036	53.764	53.584	53.945	-0.1894					14	6	3	0	0	0	0.12463	1	20751	20751		89.427	35.851	1	75814000			5880	1505	3123	3154	5749	5749					-0.005532991220889016
DEVLFTGV	8	Unmodified	_DEVLFTGV_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MULTI-MSMS	HCT116MG_D190212_S3	3	879.4465942382812	1	879.445825	878.438549	0.73152	0.00064333	0.11181	9.833E-05	0.84333	0.00074166	879.4457692177593	54.147	0.57381	53.847	53.613	54.187	-0.29946					26	10	4	0	0	0	0.12463	2	20492	20492;20643		89.427	22.391	1	53775000			5881	1505	3123	3154	5750;5751	5750					-0.005532991220889016
DEVLFTGV	8	Unmodified	_DEVLFTGV_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MULTI-MSMS	HCT116MG_D190212_S4	4	879.4463500976562	1	879.445825	878.438549	0.8906	0.00078323	-0.23734	-0.00020873	0.65326	0.00057451	879.4456704319264	54.158	0.41685	53.829	53.665	54.082	-0.32923					14	7	3	0	0	0	0.070772	1	20236	20236		101.72	34.687	1	12084000			5882	1505	3123	3154	5752	5752					-0.005532991220889016
DEVLLFERA	9	Unmodified	_DEVLLFERA_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2909545898438	2	546.290214	1090.56587	0.46257	0.0002527	0.90084	0.00049212	1.3634	0.00074482	546.2905299532614	50.859	0.25797	50.68	50.552	50.81	-0.17868					7	4	2	0	0	0	0.41788	1	19541	19541		21.59	2.2282	1	14067000			5883	1435	3124	3155	5753	5753					0.02421421752092101
DEVLLFERA	9	Unmodified	_DEVLLFERA_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	546.290214	1090.56587	0.46257	0.0002527	0.90084	0.00049212	1.3634	0.00074482	546.2905299532614	50.859	0.25797	50.68	50.552	50.81	-0.17868	0	0	NaN	21.59	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14067000			5884	1435	3124	3155							0.02421421752092101
DEVLLQKL	8	Unmodified	_DEVLLQKL_					0	0	0		ENSG00000092020|ENST00000261475|PPP2R3C;ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF	ENSG00000092020|ENST00000261475|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MSMS	HCT116MG_D190212_S3	3	479.2853088378906	2	479.2844	956.554247	0.2756	0.00013209	0.43515	0.00020856	0.71075	0.00034065	479.2847401810385	48.274	0.2086	47.958	47.827	48.036	-0.31596					6	3	2	0	0	0	0.34844	1	18170	18170		54.774	8.7526	1	5262000			5885	1571	3125	3156	5754	5754					0.0742322472875685
DEVLVAGF	8	Unmodified	_DEVLVAGF_					0	0	0		ENST00000429775.2_1_X:70182861-70183140:+|nuORF;ENSG00000186468|ENST00000296674|RPS23	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	849.4359741210938	1	849.435261	848.427984	0.68575	0.0005825	0.19668	0.00016706	0.88242	0.00074956	849.435499196632	54.565	0.31381	54.269	54.138	54.452	-0.29587					6	5	2	0	0	0	0.29313	1	20692	20692		59.795	25.608	1	4470100			5886	5886	3126	3157	5755	5755					-0.002292817765237487
DEVNALVL	8	Unmodified	_DEVNALVL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;ENST00000480636.1_1_3:179094944-179096278:+|nuORF	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S3	3	872.4730834960938	1	872.472374	871.465098	0.9012	0.00078627	-0.12542	-0.00010942	0.77578	0.00067685	872.4721978895403	49.159	0.4744	48.843	48.657	49.132	-0.31596					18	8	3	0	0	0	0.12463	1	18489	18489		89.427	0	1	38832000			5887	5176	3127	3158	5756	5756					0.02422389769219535
DEVNALVL	8	Unmodified	_DEVNALVL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;ENST00000480636.1_1_3:179094944-179096278:+|nuORF	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S3	3	436.73968505859375	2	436.739825	871.465098	0.25843	0.00011287	-0.44254	-0.00019328	-0.18412	-8.0411E-05	436.7396348002691	49.159	0.422	48.843	48.657	49.079	-0.31596					11	7	2	0	0	0	0.31873	1	18514	18514		57.471	6.6163	1	7017600			5888	5176	3127	3158	5757	5757					0.02422389769219535
DEVNGLISM	9	Unmodified	_DEVNGLISM_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	HCT116MG_D190212_S2	2	977.4609985351562	1	977.460823	976.453547	0.71302	0.00069695	-0.80474	-0.00078661	-0.091726	-8.9658E-05	977.45961265306	50.39	0.31464	50.218	50.036	50.351	-0.1719					9	5	2	0	0	0	0.023938	1	19317	19317		92.491	46.47	1	29658000			5889	2188	3128	3159	5758	5758					-0.03562175316403682
DEVNGLISM	9	Unmodified	_DEVNGLISM_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	HCT116MG_D190212_S3	3	977.4611206054688	1	977.460823	976.453547	0.58525	0.00057205	0.4834	0.00047251	1.0686	0.0010446	977.4612627796396	50.569	0.26056	50.255	50.125	50.386	-0.31381					6	4	2	0	0	0	0.031089	1	19104	19104		85.272	36.926	1	6686200			5890	2188	3128	3159	5759	5759					-0.03562175316403682
DEVNGLISM	9	Unmodified	_DEVNGLISM_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	HCT116MG_D190212_S3	3	489.2337951660156	2	489.23405	976.453547	0.065002	3.1801E-05	0.10612	5.1919E-05	0.17112	8.372E-05	489.2340464171911	50.555	0.26056	50.242	50.125	50.386	-0.31381					7	4	2	0	0	0	0.26536	1	19124	19124		34.402	9.0024	1	4269100			5891	2188	3128	3159	5760	5760					-0.03562175316403682
DEVPRLANSYD	11	Unmodified	_DEVPRLANSYD_					0	0	0			REV__ENSG00000174343|ENST00000310169|CHRNA9	REV__ENSG00000174343|ENST00000310169|CHRNA9	MULTI-MSMS	HCT116MG_D190212_S2	2	639.801513671875	2	639.801674	1277.58879	0.69629	0.00044549	-0.060878	-3.895E-05	0.63541	0.00040654	639.8014255983618	33.741	0.31207	33.548	33.327	33.639	-0.19296					9	5	2	0	0	0	0.6977	1	12563	12563		22.658	1.1211	1	18828000	+		5892	13479	3129	3160	5761	5761					-0.03889603921084017
DEVPRLANSYD	11	Unmodified	_DEVPRLANSYD_					0	0	0			REV__ENSG00000174343|ENST00000310169|CHRNA9	REV__ENSG00000174343|ENST00000310169|CHRNA9	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	639.801674	1277.58879	0.75904	0.00048564	0.29055	0.00018589	1.0496	0.00067153	639.8015642913724	33.582	0.20721	33.582	33.452	33.659	0	0.016991	0.00032185	NaN	22.658	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8099300	+		5893	13479	3129	3160							-0.03889603921084017
DEVPRLANSYD	11	Unmodified	_DEVPRLANSYD_					0	0	0			REV__ENSG00000174343|ENST00000310169|CHRNA9	REV__ENSG00000174343|ENST00000310169|CHRNA9	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	639.801674	1277.58879	0.69629	0.00044549	-0.060878	-3.895E-05	0.63541	0.00040654	639.8014255983618	33.741	0.31207	33.548	33.327	33.639	-0.19296	-0.016991	-0.00012784	NaN	22.658	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18828000	+		5894	13479	3129	3160							-0.03889603921084017
DEVPVGVEM	9	Unmodified	_DEVPVGVEM_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	HCT116MG_D190212_S2	2	974.4503784179688	1	974.449924	973.442648	0.41831	0.00040762	0.011616	1.132E-05	0.42992	0.00041894	974.4501021371317	44.136	0.2565	44.057	43.916	44.173	-0.078373					7	4	2	0	0	0	0.010834	1	16776	16776		111.29	62.941	1	21104000			5895	3951	3130	3161	5762	5762					-0.04513577690681814
DEVPVGVEM	9	Unmodified	_DEVPVGVEM_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-SECPEP	HCT116MG_D190212_S3	3	487.7906188964844	2	487.7286	973.442648	0.34947	0.00017045	0.014795	7.2158E-06	0.36427	0.00017766	487.72851426242585	44.381	0.20731	44.074	43.916	44.123	-0.30759					6	3	2	0	0	0	0.14889	1	16550	16550		34.402	23.578	1	4260000			5896	3951	3130	3161	5763	5763					-0.04513577690681814
DEVPVGVEM	9	Unmodified	_DEVPVGVEM_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MATCH	HCT116MG_D190212_S2	2		2	487.7286	973.442648	-0.041055	-2.0024E-05	0.90536	0.00044157	0.86431	0.00042155	487.7287629420608	44.149	0.15373	44.07	43.967	44.121	-0.078373	-0.0015193	0.00072293	NaN	34.402	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4626000			5897	3951	3130	3161							-0.04513577690681814
DEVQITSV	8	Unmodified	_DEVQITSV_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MSMS	HCT116MG_D190212_S3	3	890.4469604492188	1	890.446553	889.439277	0.79402	0.00070703	-0.0035996	-3.2052E-06	0.79042	0.00070383	890.4465936154153	38.796	0.57201	38.495	38.3	38.872	-0.30137					18	10	2	0	0	0	0.061239	1	14382	14382		111.29	18.796	1	8484300			5898	4956	3131	3162	5764	5764					-0.009865044730531736
DEVQITSV	8	Unmodified	_DEVQITSV_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-SECPEP	HCT116MG_D190212_S3	3	445.3132629394531	2	445.726915	889.439277	-0.0026651	-1.1879E-06	0.34061	0.00015182	0.33795	0.00015063	445.72689213133424	38.852	0.31266	38.55	38.3	38.613	-0.30137					8	5	2	0	0	0	0.31855	1	14380	14380		8.5933	3.3626	1	1907000			5899	4956	3131	3162	5765	5765					-0.009865044730531736
DEVQITSV	8	Unmodified	_DEVQITSV_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	890.446553	889.439277	0.84588	0.00075321	-0.10522	-9.3691E-05	0.74066	0.00065952	890.4466609381948	38.569	0.4757	38.485	38.33	38.806	-0.084621	-0.0052917	-5.2646E-05	NaN	111.29	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13468000			5900	4956	3131	3162							-0.009865044730531736
DEVQSHIF	8	Unmodified	_DEVQSHIF_					0	0	0		ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A;ENST00000426044.1_1_19:12305955-12345626:+|nuORF	ENSG00000054793|ENST00000338821|ATP9A	ENSG00000054793|ENST00000338821|ATP9A	MSMS	HCT116MG_D190212_S4	4	487.732421875	2	487.732532	973.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.28	1	39.902	39.402	40.402	-0.37828								0	0	0	0.76512	1	14772	14772		25.399	4.9457	1				5901	1074	3132	3163	5766	5766					-0.037276823789056834
DEVQVVRGH	9	Unmodified	_DEVQVVRGH_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	519.7701416015625	2	519.76998	1037.52541	0.45878	0.00023846	-0.091471	-4.7544E-05	0.36731	0.00019092	519.7698537603185	21.199	0.37039	21.199	21.067	21.437	0					14	6	3	0	0	0	0.0096523	1	7449	7449		114.2	81.896	1	34253000			5902	8377	3133	3164	5767	5767					0.008145001523189421
DEVQVVRGH	9	Unmodified	_DEVQVVRGH_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	519.770263671875	2	519.76998	1037.52541	0.20609	0.00010712	-0.042171	-2.1919E-05	0.16392	8.5202E-05	519.7699851495906	21.63	0.36357	21.245	21.063	21.427	-0.38503					12	6	3	0	0	0	0.0096523	1	7627	7627		114.2	83.565	1	56441000			5903	8377	3133	3164	5768	5768					0.008145001523189421
DEVQVVRGHY	10	Unmodified	_DEVQVVRGHY_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	601.302001953125	2	601.301644	1200.58874	0.78021	0.00046914	-0.24962	-0.0001501	0.53059	0.00031904	601.3014478281787	28.455	0.42569	28.455	28.268	28.694	0					14	7	3	0	0	0	0.013374	2	10368	10320;10368		168.54	168.54	1	51435000			5904	8377	3134	3165	5769;5770	5770					-0.0035355913041712483
DEVQVVRGHY	10	Unmodified	_DEVQVVRGHY_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	401.2035217285156	3	401.203522	1200.58874	0.20884	8.3788E-05	-0.087488	-3.51E-05	0.12135	4.8688E-05	401.2035319167912	28.455	0.21391	28.455	28.321	28.535	0					6	3	2	0	0	0	0.47325	1	10377	10377		37.075	26.176	1	14709000			5905	8377	3134	3165	5771	5771					-0.0035355913041712483
DEVQVVRGHY	10	Unmodified	_DEVQVVRGHY_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	601.802734375	2	601.301644	1200.58874	0.63878	0.0003841	0.11645	7.0023E-05	0.75523	0.00045412	601.3016605652359	28.748	0.46007	28.432	28.249	28.709	-0.31613					16	8	4	0	0	0	0.011829	2	10504	10486;10504		171.46	125.76	1	158060000			5906	8377	3134	3165	5772;5773	5773					-0.0035355913041712483
DEVQVVRGHY	10	Unmodified	_DEVQVVRGHY_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	401.203369140625	3	401.203522	1200.58874	-0.10198	-4.0916E-05	0.065615	2.6325E-05	-0.036368	-1.4591E-05	401.2035082285849	28.759	0.25424	28.443	28.301	28.555	-0.31613					9	4	3	0	0	0	0.28966	1	10520	10520		51.415	39.24	1	43235000			5907	8377	3134	3165	5774	5774					-0.0035355913041712483
DEVQVVRGHY	10	Unmodified	_DEVQVVRGHY_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	601.302490234375	2	601.301644	1200.58874	0.76754	0.00046152	0.11749	7.0645E-05	0.88503	0.00053217	601.301592158836	28.825	0.31219	28.603	28.421	28.733	-0.22195					13	5	3	0	0	0	0.016108	1	10430	10430		159.1	113.4	1	35153000			5908	8377	3134	3165	5775	5775					-0.0035355913041712483
DEVQVVRGHY	10	Unmodified	_DEVQVVRGHY_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	401.2035827636719	3	401.203522	1200.58874	0.19017	7.6298E-05	-0.20258	-8.1274E-05	-0.012403	-4.9761E-06	401.2034764050617	28.822	0.26022	28.6	28.473	28.733	-0.22196					8	4	3	0	0	0	0.28966	1	10452	10452		51.415	42.439	1	12261000			5909	8377	3134	3165	5776	5776					-0.0035355913041712483
DEVQVVRGHY	10	Unmodified	_DEVQVVRGHY_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	601.3021240234375	2	601.301644	1200.58874	1.2591	0.00075712	-0.71707	-0.00043118	0.54206	0.00032594	601.3013681018076	28.941	0.20777	28.6	28.47	28.678	-0.34059					6	3	2	0	0	0	0.024602	1	10440	10440		140.63	91.079	1	7607300			5910	8377	3134	3165	5777	5777					-0.0035355913041712483
DEVQVVRGHY	10	Unmodified	_DEVQVVRGHY_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		3	401.203522	1200.58874	0.083411	3.3465E-05	-0.67607	-0.00027124	-0.59266	-0.00023778	401.2032107458285	28.95	0.20777	28.609	28.47	28.678	-0.34059	0.082458	-0.00069019	NaN	51.415	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2381300			5911	8377	3134	3165							-0.0035355913041712483
DEVRAWTI	8	Unmodified	_DEVRAWTI_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1;chr2:174079086-174081152|156|15.41|0.92|4.07|-|0|None,OLA1|1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MSMS	HCT116MG_D190212_S3	3	495.256591796875	2	495.256174	988.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.447	1	48.131	47.631	48.631	-0.31596								0	0	0	0.14326	1	18221	18221		75.761	28.012	1				5912	3558	3135	3166	5778	5778					0.0030859689210274155
DEVRLLKY	8	Unmodified	_DEVRLLKY_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2964477539062	2	518.295299	1034.57605	-0.42041	-0.0002179	0.77615	0.00040228	0.35574	0.00018438	518.2958190668154	38.149	0.208	38.149	38.019	38.227	0					6	3	2	0	0	0	0.043218	1	14284	14284		131.27	69.91	1	11007000			5913	2297	3136	3167	5779	5779					0.060140294773418645
DEVRLLKY	8	Unmodified	_DEVRLLKY_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2955932617188	2	518.295299	1034.57605	0.10433	5.4075E-05	0.46436	0.00024068	0.56869	0.00029475	518.2954579480368	38.182	0.31048	38.089	37.908	38.219	-0.09301					9	5	2	0	0	0	0.0029202	1	14340	14340		174.73	74.928	1	69039000			5914	2297	3136	3167	5780	5780					0.060140294773418645
DEVRLLKY	8	Unmodified	_DEVRLLKY_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2958984375	2	518.295299	1034.57605	0.20992	0.0001088	1.3352	0.00069204	1.5451	0.00080084	518.7972149564168	38.42	0.31079	38.118	37.937	38.248	-0.30137					10	5	3	0	0	0	0.027354	1	14236	14236		147.06	68.331	1	9896100			5915	2297	3136	3167	5781	5781					0.060140294773418645
DEVRLSLQSL	10	Unmodified	_DEVRLSLQSL_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MSMS	HCT116MG_D190212_S1	1	580.2725219726562	2	580.319502	1158.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.39	1	37.39	36.89	37.89	0								0	0	0	0.05452	1	13968	13968		92.653	7.0118	1		+		5916	10843	3137	3168	5782	5782					0.05148478326600525
DEVRTGTY	8	Unmodified	_DEVRTGTY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MSMS	HCT116MG_D190212_S1	1	470.7222900390625	2	470.722164	939.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.246	1	22.246	21.746	22.746	0								0	0	0	0.12223	1	7867	7867		79.596	35.738	1				5917	1325	3138	3169	5783	5783					-0.042362727585668836
DEVRTGTY	8	Unmodified	_DEVRTGTY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S2	2	470.72222900390625	2	470.722164	939.429775	0.31105	0.00014642	0.067761	3.1896E-05	0.37881	0.00017832	470.72205026972154	22.612	0.51923	22.227	22.051	22.57	-0.3852					15	9	3	0	0	0	0.061818	1	8023	8023		110.67	49.317	1	47410000			5918	1325	3138	3169	5784	5784					-0.042362727585668836
DEVRTGTY	8	Unmodified	_DEVRTGTY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S2	2	940.4381103515625	1	940.437051	939.429775	0.72868	0.00068528	-0.081966	-7.7084E-05	0.64672	0.0006082	940.4368078868723	22.617	0.25912	22.232	22.051	22.31	-0.3852					6	4	2	0	0	0	0.0068492	1	8038	8038		168.66	79.755	1	13949000			5919	1325	3138	3169	5785	5785					-0.042362727585668836
DEVRTGTY	8	Unmodified	_DEVRTGTY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S3	3	470.7221374511719	2	470.722164	939.429775	0.18327	8.6268E-05	0.20123	9.4721E-05	0.38449	0.00018099	470.7221592395731	22.171	0.46902	22.172	22.042	22.511	0.00074577					18	8	4	0	0	0	0.054833	1	7769	7769		118.07	49.988	1	33710000			5920	1325	3138	3169	5786	5786					-0.042362727585668836
DEVRTGTY	8	Unmodified	_DEVRTGTY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S3	3	940.436767578125	1	940.437051	939.429775	0.53765	0.00050563	-0.4338	-0.00040796	0.10385	9.7667E-05	940.4364479944973	22.178	0.36448	22.179	21.99	22.354	0.00074577					12	6	3	0	0	0	0.044506	1	7793	7793		129.77	57.85	1	5613900			5921	1325	3138	3169	5787	5787					-0.042362727585668836
DEVRTGTY	8	Unmodified	_DEVRTGTY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S4	4	470.7221984863281	2	470.722164	939.429775	0.13145	6.1877E-05	0.038113	1.7941E-05	0.16956	7.9817E-05	470.72214656388803	22.449	0.31156	22.221	22.039	22.351	-0.22777					8	5	2	0	0	0	0.1105	1	7812	7812		92.653	40.385	1	8083000			5922	1325	3138	3169	5788	5788					-0.042362727585668836
DEVRTLTY	8	Unmodified	_DEVRTLTY_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENSG00000111218|ENST00000382622|PRMT8;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	498.7533264160156	2	498.753464	995.492375	0.38858	0.00019381	-1.3279	-0.00066231	-0.93936	-0.00046851	498.7526718790532	34.154	0.26085	34.154	33.972	34.233	0					8	4	2	0	0	0	0.061818	1	12654	12654		110.67	56.842	1	68852000			5923	2936;9425	3139	3170	5789	5789					-0.005551266903921714
DEVRTLTY	8	Unmodified	_DEVRTLTY_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENSG00000111218|ENST00000382622|PRMT8;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	996.4982299804688	1	996.499652	995.492375	0.69912	0.00069668	-0.29536	-0.00029433	0.40376	0.00040235	996.4990491679602	34.154	0.20865	34.154	34.024	34.233	0					5	3	2	0	0	0	0.12475	1	12692	12692		89.401	39.468	1	8074200			5924	2936;9425	3139	3170	5790	5790					-0.005551266903921714
DEVRTLTY	8	Unmodified	_DEVRTLTY_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENSG00000111218|ENST00000382622|PRMT8;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7534484863281	2	498.753464	995.492375	0.4941	0.00024643	1.6312	0.00081358	2.1253	0.00106	498.75488646147994	34.273	0.41493	34.097	33.916	34.331	-0.17512					20	7	5	0	0	0	0.079387	2	12736	12736;12831		99.755	51.409	1	447480000			5925	2936;9425	3139	3170	5791;5792	5791					-0.005551266903921714
DEVRTLTY	8	Unmodified	_DEVRTLTY_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENSG00000111218|ENST00000382622|PRMT8;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	996.5003662109375	1	996.499652	995.492375	0.69125	0.00068883	0.052422	5.2238E-05	0.74367	0.00074107	996.4994109702594	34.273	0.31196	34.097	33.967	34.279	-0.17512					14	5	3	0	0	0	0.040608	1	12748	12748		134.3	70.059	1	131550000			5926	2936;9425	3139	3170	5793	5793					-0.005551266903921714
DEVRTLTY	8	Unmodified	_DEVRTLTY_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENSG00000111218|ENST00000382622|PRMT8;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	996.4994506835938	1	996.499652	995.492375	0.42407	0.00042259	-0.24282	-0.00024197	0.18125	0.00018061	996.4993245561931	34.516	0.36342	34.219	34.025	34.388	-0.29707					14	6	3	0	0	0	0.027354	1	12705	12705		147.06	82.823	1	17003000			5927	2936;9425	3139	3170	5794	5794					-0.005551266903921714
DEVRTLTY	8	Unmodified	_DEVRTLTY_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENSG00000111218|ENST00000382622|PRMT8;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-SECPEP	HCT116MG_D190212_S3	3	498.76025390625	2	498.753464	995.492375	0.2946	0.00014693	-0.60607	-0.00030228	-0.31147	-0.00015535	498.7532344526387	34.504	0.51949	34.207	34.025	34.544	-0.29707					25	9	4	0	0	0	0.16903	1	12771	12771		63.961	27.833	1	133550000			5928	2936;9425	3139	3170	5795	5795					-0.005551266903921714
DEVRTLTY	8	Unmodified	_DEVRTLTY_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF;ENSG00000111218|ENST00000382622|PRMT8;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S4	4	996.498779296875	1	996.499652	995.492375	0.49625	0.00049452	0.014606	1.4555E-05	0.51086	0.00050907	996.4992966317695	34.598	0.20043	34.212	34.087	34.288	-0.38558					5	3	2	0	0	0	0.012121	1	12648	12648		160.52	95.281	1	4782600			5929	2936;9425	3139	3170	5796	5796					-0.005551266903921714
DEVTIVNIL	9	Unmodified	_DEVTIVNIL_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;ENST00000557937.5_1_15:60655071-60678274:-|nuORF;chr15:60364523-60370591|195|28.28|0.76|5.22|-|2|ANXA2,None|1	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S2	2	1015.5682373046875	1	1015.567	1014.55973	0.78326	0.00079545	0.15024	0.00015258	0.93349	0.00094803	1015.5670508992712	57.827	0.26156	57.652	57.521	57.783	-0.17494					11	4	3	0	0	0	0.016134	2	22340	22340;22350		100.37	6.4105	1	43308000			5930	5683	3140	3171	5797;5798	5797					0.05302903520566815
DEVTIVNIL	9	Unmodified	_DEVTIVNIL_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;ENST00000557937.5_1_15:60655071-60678274:-|nuORF;chr15:60364523-60370591|195|28.28|0.76|5.22|-|2|ANXA2,None|1	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1015.567	1014.55973	0.8573	0.00087065	0.68749	0.00069819	1.5448	0.0015688	1015.5677008852884	57.885	0.15639	57.611	57.516	57.673	-0.27434	-0.020747	0.00045424	NaN	100.37	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1815100			5931	5683	3140	3171							0.05302903520566815
DEVTTVQV	8	Unmodified	_DEVTTVQV_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	HCT116MG_D190212_S3	3	890.4469604492188	1	890.446553	889.439277	0.69675	0.00062042	-0.19538	-0.00017398	0.50137	0.00044644	890.4467141782326	36.008	0.35899	35.707	35.527	35.886	-0.30042					13	6	3	0	0	0	0.21487	1	13293	13293		70.716	10.326	1	9564400			5932	3402	3141	3172	5799	5799					-0.009865044730418049
DEVTTVQV	8	Unmodified	_DEVTTVQV_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	HCT116MG_D190212_S3	3	445.7269592285156	2	445.726915	889.439277	-0.065182	-2.9053E-05	0.28675	0.00012781	0.22156	9.8757E-05	445.72692031482245	36.004	0.30686	35.704	35.527	35.834	-0.30042					9	5	2	0	0	0	0.36164	1	13294	13294		53.576	21.459	1	6743200			5933	3402	3141	3172	5800	5800					-0.009865044730418049
DEVVWVRA	8	Unmodified	_DEVVWVRA_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;ENST00000474184.1_1_2:136736721-136740991:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	487.2596130371094	2	487.258717	972.50288	0.12137	5.914E-05	0.42287	0.00020605	0.54425	0.00026519	487.25879555842704	42.716	0.25715	42.716	42.538	42.795	0					9	4	3	0	0	0	0.09113	1	16128	16128		97.075	39.603	1	13391000			5934	2490	3142	3173	5801	5801					0.015529007547115725
DEVVWVRA	8	Unmodified	_DEVVWVRA_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;ENST00000474184.1_1_2:136736721-136740991:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	487.25909423828125	2	487.258717	972.50288	0.52996	0.00025823	-0.086965	-4.2374E-05	0.44299	0.00021585	487.2586632492371	42.703	0.31129	42.633	42.481	42.793	-0.069981					12	5	3	0	0	0	0.04808	1	16175	16175		125.62	44.012	1	73185000			5935	2490	3142	3173	5802	5802					0.015529007547115725
DEVVWVRA	8	Unmodified	_DEVVWVRA_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;ENST00000474184.1_1_2:136736721-136740991:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MSMS	HCT116MG_D190212_S3	3	487.2587585449219	2	487.258717	972.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.006	1	42.701	42.201	43.201	-0.30472								0	0	0	0.039964	1	16038	16038		97.075	39.603	1				5936	2490	3142	3173	5803	5803					0.015529007547115725
DEVYQVTVY	9	Unmodified	_DEVYQVTVY_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987-2|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2667236328125	2	558.266404	1114.51826	0.46408	0.00025908	0.04375	2.4424E-05	0.50783	0.0002835	558.2663694553081	45.118	0.57196	45.026	44.839	45.411	-0.092476					19	10	3	0	0	0	0.031089	1	17152	17152		85.272	49.145	1	34883000			5937	3368	3143	3174	5804	5804					-0.03442277238764291
DEVYQVTVY	9	Unmodified	_DEVYQVTVY_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987-2|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	558.2670288085938	2	558.266404	1114.51826	0.43043	0.00024029	0.14523	8.1076E-05	0.57565	0.00032137	558.2662599150693	45.346	0.72964	45.035	44.783	45.512	-0.31094					26	13	3	0	0	0	0.027442	2	16952	16952;16980		88.954	47.114	1	21048000			5938	3368	3143	3174	5805;5806	5805					-0.03442277238764291
DEVYQVTVY	9	Unmodified	_DEVYQVTVY_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987-2|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1115.52587890625	1	1115.52553	1114.51826	0.42414	0.00047314	0.22967	0.0002562	0.65381	0.00072934	1115.5253786842848	45.298	0.52179	44.988	44.836	45.358	-0.30995					20	9	3	0	0	0	0.01389	1	16972	16972		103.75	53.815	1	7263500			5939	3368	3143	3174	5807	5807					-0.03442277238764291
DEVYQVTVY	9	Unmodified	_DEVYQVTVY_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987-2|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	558.2665405273438	2	558.266404	1114.51826	0.32178	0.00017964	0.11482	6.4098E-05	0.43659	0.00024373	558.2663074955016	45.36	0.56563	44.988	44.832	45.398	-0.37266					20	10	3	0	0	0	0.069315	1	16722	16722		65.235	30.833	1	11737000			5940	3368	3143	3174	5808	5808					-0.03442277238764291
DEVYQVTVY	9	Unmodified	_DEVYQVTVY_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987-2|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1115.5260009765625	1	1115.52553	1114.51826	0.5635	0.0006286	0.13636	0.00015212	0.69987	0.00078072	1115.5258223136511	45.344	0.4127	44.972	44.832	45.245	-0.37266					12	7	3	0	0	0	0.027492	1	16728	16728		88.904	50.93	1	4954200			5941	3368	3143	3174	5809	5809					-0.03442277238764291
DEWDAVML	8	Unmodified	_DEWDAVML_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-SECPEP	HCT116MG_D190212_S2	2	978.5170288085938	1	978.42371	977.416433	0.76406	0.00074758	-0.60981	-0.00059665	0.15425	0.00015092	978.4228068374011	57.187	0.15605	57.008	56.895	57.051	-0.17904					6	2	3	0	0	0	0.2988	1	22065	22065		15.847	0	1	5640100			5942	2236	3144	3175	5810	5810					-0.0731784686215633
DEWDAVML	8	Unmodified	_DEWDAVML_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	HCT116MG_D190212_S3	3	978.424560546875	1	978.42371	977.416433	0.86629	0.0008476	0.044917	4.3948E-05	0.91121	0.00089155	978.4236303773649	57.295	0.1568	57.016	56.937	57.094	-0.27913					4	2	2	0	0	0	0.32897	1	21794	21794		56.541	41.96	1	2641000			5943	2236	3144	3175	5811	5811					-0.0731784686215633
DEWEGLRKH	9	Unmodified	_DEWEGLRKH_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	585.2879638671875	2	585.288537	1168.56252	0.53032	0.00031039	-1.2744	-0.00074591	-0.7441	-0.00043552	585.2877045420718	27.918	0.20539	27.576	27.449	27.655	-0.34201					5	3	2	0	0	0	0.45867	1	10192	10192		19.257	6.2145	1	14111000			5944	163	3145	3176	5812	5812					-0.015018283019117007
DEWHEHTAF	9	Unmodified	_DEWHEHTAF_					0	0	0		CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant;ENSG00000180917|ENST00000434935|CMTR2	CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant	CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	586.24365234375	2	586.243795	1170.47304	0.11974	7.0199E-05	-0.30407	-0.00017826	-0.18433	-0.00010806	586.243756472188	36.212	0.26007	35.912	35.781	36.042	-0.30042					10	4	3	0	0	0	0.030039	1	13397	13397		108	86.25	1	11265000			5945	487	3146	3177	5813	5813					-0.10538082981292973
DEWHEHTAF	9	Unmodified	_DEWHEHTAF_					0	0	0		CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant;ENSG00000180917|ENST00000434935|CMTR2	CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant	CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	586.2438354492188	2	586.243795	1170.47304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.408	1	36.022	35.522	36.522	-0.38558								0	0	0	0.16977	1	13322	13322		54.774	39.935	1				5946	487	3146	3177	5814	5814					-0.10538082981292973
DEWHEHTAF	9	Unmodified	_DEWHEHTAF_					0	0	0		CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant;ENSG00000180917|ENST00000434935|CMTR2	CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant	CMTR2|p.S551Ffs*2|1|0.36|ENSG00000180917|chr16:71284269-71284270|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	586.243795	1170.47304	0.5968	0.00034987	-0.10965	-6.4282E-05	0.48715	0.00028559	586.2434889612418	36.361	0.20406	35.976	35.818	36.022	-0.38558	0.032094	7.1391E-05	NaN	108	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3444900			5947	487	3146	3177							-0.10538082981292973
DEWKAIQN	8	Unmodified	_DEWKAIQN_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	502.2468566894531	2	502.245806	1002.47706	0.39977	0.00020078	0.17993	9.0371E-05	0.5797	0.00029115	502.24590089401136	31.739	0.52111	31.739	31.388	31.909	0					14	9	2	0	0	0	0.058063	1	11688	11688		114.65	59.876	1	18728000			5948	3778	3147	3178	5815	5815					-0.02407993487577187
DEWKAIQN	8	Unmodified	_DEWKAIQN_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	502.24603271484375	2	502.245806	1002.47706	0.61687	0.00030982	-0.15577	-7.8236E-05	0.4611	0.00023158	502.24565342754727	31.913	0.67356	31.674	31.259	31.933	-0.23944					27	12	3	0	0	0	0.065113	1	11780	11780		107.19	52.413	1	62153000			5949	3778	3147	3178	5816	5816					-0.02407993487577187
DEWKAIQN	8	Unmodified	_DEWKAIQN_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MSMS	HCT116MG_D190212_S3	3	502.245849609375	2	502.245806	1002.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.102	1	31.824	31.324	32.324	-0.27841								0	0	0	0.032836	1	11753	11753		99.799	45.025	1				5950	3778	3147	3178	5817	5817					-0.02407993487577187
DEWKAIQN	8	Unmodified	_DEWKAIQN_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	502.74798583984375	2	502.245806	1002.47706	0.22598	0.0001135	-0.04452	-2.236E-05	0.18146	9.1137E-05	502.2456956609124	32.132	0.25954	31.756	31.642	31.901	-0.37529					7	4	2	0	0	0	0.24264	1	11709	11709		65.235	27.261	1	5271100			5951	3778	3147	3178	5818	5818					-0.02407993487577187
DEWKELKQH	9	Unmodified	_DEWKELKQH_					0	0	0		ENSG00000119392|ENST00000309971|GLE1;nc|ENSG00000119392|Q53GS7-2|GLE1;GLE1|p.K455Nfs*31|1|0.1|ENSG00000119392|chr9:128533562-128533562|A/-|frameshift_variant	ENSG00000119392|ENST00000309971|GLE1	ENSG00000119392|ENST00000309971|GLE1	MULTI-MSMS	HCT116MG_D190212_S2	2	606.8037719726562	2	606.80402	1211.59349	0.60548	0.00036741	-0.26758	-0.00016237	0.33791	0.00020504	606.8037355587094	26.9	0.31459	26.547	26.345	26.659	-0.35254					9	5	3	0	0	0	0.0052024	1	9772	9772		135.86	95.914	1	15756000			5952	2637	3148	3179	5819	5819					-0.0038467498768568475
DEWKELKQH	9	Unmodified	_DEWKELKQH_					0	0	0		ENSG00000119392|ENST00000309971|GLE1;nc|ENSG00000119392|Q53GS7-2|GLE1;GLE1|p.K455Nfs*31|1|0.1|ENSG00000119392|chr9:128533562-128533562|A/-|frameshift_variant	ENSG00000119392|ENST00000309971|GLE1	ENSG00000119392|ENST00000309971|GLE1	MULTI-MSMS	HCT116MG_D190212_S2	2	404.8717346191406	3	404.871772	1211.59349	-0.15261	-6.1787E-05	-0.22131	-8.9601E-05	-0.37392	-0.00015139	404.87167344342816	26.932	0.20947	26.579	26.45	26.659	-0.35254					5	3	2	0	0	0	0.34272	1	9791	9791		19.626	15.75	1	18392000			5953	2637	3148	3179	5820	5820					-0.0038467498768568475
DEWKGMVL	8	Unmodified	_DEWKGMVL_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	HCT116MG_D190212_S2	2	489.24188232421875	2	489.241678	976.468803	0.26267	0.00012851	0.13112	6.4147E-05	0.39378	0.00019265	489.2416697366145	51.617	0.41111	51.434	51.218	51.629	-0.18369					12	7	2	0	0	0	0.33298	1	19820	19820		56.177	33.029	1	33598000			5954	5906	3149	3180	5821	5821					-0.020372637285390738
DEWKGMVL	8	Unmodified	_DEWKGMVL_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	HCT116MG_D190212_S2	2	977.4773559570312	1	977.476079	976.468803	0.68808	0.00067258	0.54579	0.00053349	1.2339	0.0012061	977.4764790862782	51.614	0.20521	51.431	51.321	51.527	-0.18368					6	3	2	0	0	0	0.17427	1	19831	19831		78.728	21.257	1	16906000			5955	5906	3149	3180	5822	5822					-0.020372637285390738
DEWKGMVL	8	Unmodified	_DEWKGMVL_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	HCT116MG_D190212_S3	3	489.2420959472656	2	489.241678	976.468803	0.11209	5.4841E-05	1.0289	0.00050336	1.141	0.00055821	489.2422206819011	51.824	0.26157	51.515	51.332	51.594	-0.30927					7	4	2	0	0	0	0.81191	1	19584	19584		10.074	5.7447	1	5144300			5956	5906	3149	3180	5823	5823					-0.020372637285390738
DEWKHLDH	8	Unmodified	_DEWKHLDH_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MSMS	HCT116MG_D190212_S1	1	540.1828002929688	2	540.24888	1078.48321	0.47243	0.00025523	-0.94996	-0.00051322	-0.47753	-0.00025798	540.7496980263451	23.653	0.20901	23.653	23.523	23.732	0					5	3	2	0	0	0	0.79062	1	8405	8405		12.532	0.89125	1	1953700			5957	1372	3150	3181	5824	5824					-0.052894752560632696
DEWKHLDH	8	Unmodified	_DEWKHLDH_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MSMS	HCT116MG_D190212_S2	2	540.2490234375	2	540.24888	1078.48321	0.696	0.00037601	0.51379	0.00027757	1.2098	0.00065358	540.2491298684314	24.228	0.20816	23.848	23.718	23.926	-0.38003					5	3	2	0	0	0	0.061818	1	8700	8700		110.67	59.82	1	11231000			5958	1372	3150	3181	5825	5825					-0.052894752560632696
DEWKHLDH	8	Unmodified	_DEWKHLDH_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	540.24888	1078.48321	0.47243	0.00025523	-0.94996	-0.00051322	-0.47753	-0.00025798	540.7496980263451	23.653	0.20901	23.653	23.523	23.732	0	-0.097378	-0.00048921	NaN	110.67	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1953700			5959	1372	3150	3181							-0.052894752560632696
DEWRETAW	8	Unmodified	_DEWRETAW_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;PUM2|p.D42G|1|0.45|ENSG00000055917|chr2:20318572-20318572|T/C|missense_variant;ENST00000420234.5_1_2:20508312-20527121:-|nuORF	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	HCT116MG_D190212_S2	2	546.7410278320312	2	546.740888	1091.46722	0.66226	0.00036208	-0.12915	-7.0614E-05	0.5331	0.00029147	546.7406994302746	44.85	0.20686	44.766	44.639	44.846	-0.084797					8	3	3	0	0	0	0.3588	1	17070	17070		53.833	34.576	1	22794000			5960	1082	3151	3182	5826	5826					-0.07485181492984339
DEWRETAW	8	Unmodified	_DEWRETAW_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;PUM2|p.D42G|1|0.45|ENSG00000055917|chr2:20318572-20318572|T/C|missense_variant;ENST00000420234.5_1_2:20508312-20527121:-|nuORF	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MSMS	HCT116MG_D190212_S3	3	546.7415771484375	2	546.740888	1091.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.146	1	44.837	44.337	45.337	-0.30927								0	0	0	0.30926	1	16895	16895		53.833	28.433	1				5961	1082	3151	3182	5827	5827					-0.07485181492984339
DEWRGMVL	8	Unmodified	_DEWRGMVL_					0	0	0		ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A;ENSG00000106723|ENST00000375859|SPIN1	ENSG00000186787|ENST00000434397|SPIN2B	ENSG00000186787|ENST00000434397|SPIN2B	MULTI-MSMS	HCT116MG_D190212_S2	2	503.24517822265625	2	503.244752	1004.47495	0.65677	0.00033052	-0.36578	-0.00018408	0.29099	0.00014644	503.24460262341626	52.251	0.46375	52.064	51.883	52.347	-0.18725					14	8	3	0	0	0	0.22303	1	20071	20071		69.105	35.002	1	55436000			5962	2093	3152	3183	5828	5828					-0.02710745497017797
DEWRGMVL	8	Unmodified	_DEWRGMVL_					0	0	0		ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A;ENSG00000106723|ENST00000375859|SPIN1	ENSG00000186787|ENST00000434397|SPIN2B	ENSG00000186787|ENST00000434397|SPIN2B	MULTI-MSMS	HCT116MG_D190212_S3	3	503.24481201171875	2	503.244752	1004.47495	0.44164	0.00022225	-0.013148	-6.6168E-06	0.42849	0.00021563	503.2446588323914	52.475	0.3138	52.169	51.986	52.3	-0.30639					9	5	2	0	0	0	0.57666	1	19860	19860		34.402	22.761	1	8088300			5963	2093	3152	3183	5829	5829					-0.02710745497017797
DEWSGLNGL	9	Unmodified	_DEWSGLNGL_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	990.4531860351562	1	990.452701	989.445425	0.74416	0.00073705	-0.3756	-0.00037202	0.36855	0.00036503	990.4521203302617	54.006	0.25729	53.816	53.687	53.945	-0.1894					8	4	2	0	0	0	0.0051486	1	20810	20810		136.33	85.478	1	33271000			5964	3995	3153	3184	5830	5830					-0.049719862415145144
DEWSGLNGL	9	Unmodified	_DEWSGLNGL_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	990.4545288085938	1	990.452701	989.445425	0.61985	0.00061393	-0.020883	-2.0684E-05	0.59897	0.00059325	990.4526171365808	54.147	0.36544	53.847	53.665	54.03	-0.29946					13	6	3	0	0	0	0.0040473	1	20499	20499		149.99	99.14	1	9864100			5965	3995	3153	3184	5831	5831					-0.049719862415145144
DEWSGLNGL	9	Unmodified	_DEWSGLNGL_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	495.7303161621094	2	495.729989	989.445425	0.24218	0.00012006	0.26063	0.0001292	0.50282	0.00024926	495.730158145662	54.124	0.26084	53.825	53.665	53.925	-0.29946					8	4	2	0	0	0	0.24973	1	20529	20529		36.044	22.536	1	1872500			5966	3995	3153	3184	5832	5832					-0.049719862415145144
DEWSGLNGL	9	Unmodified	_DEWSGLNGL_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;MTDH|p.K447Rfs*19|1|0.29|ENSG00000147649|chr8:97713722-97713722|A/-|frameshift_variant	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	495.729989	989.445425	0.2845	0.00014104	-0.18808	-9.3236E-05	0.096426	4.7801E-05	495.72972499165974	54.006	0.20555	53.816	53.687	53.893	-0.1894	-0.0042153	-0.00038095	NaN	36.044	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11033000			5967	3995	3153	3184							-0.049719862415145144
DEWTVETV	8	Unmodified	_DEWTVETV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	978.4430541992188	1	978.441468	977.434192	0.59334	0.00058055	0.42301	0.00041389	1.0164	0.00099444	978.4417478729742	47.287	0.36526	46.971	46.801	47.166	-0.31525					9	7	2	0	0	0	0.10511	1	17761	17761		93.883	19.487	1	12870000			5968	3346	3154	3185	5833	5833					-0.05542808335655991
DEWTVETV	8	Unmodified	_DEWTVETV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S4	4	978.4432983398438	1	978.441468	977.434192	0.7428	0.00072679	0.069843	6.8338E-05	0.81264	0.00079512	978.4418209251589	47.306	0.16799	46.936	46.848	47.016	-0.37038					5	3	2	0	0	0	0.10511	1	17512	17512		93.883	19.487	1	7139300			5969	3346	3154	3185	5834	5834					-0.05542808335655991
DEWTVETV	8	Unmodified	_DEWTVETV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	978.441468	977.434192	0.92522	0.00090527	0.86758	0.00084888	1.7928	0.0017541	978.4422590921098	47.121	0.20668	47	46.871	47.078	-0.12175	0.030779	0.00038309	NaN	93.883	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14543000			5970	3346	3154	3185							-0.05542808335655991
DEWTWPVT	8	Unmodified	_DEWTWPVT_					0	0	0			REV__ENST00000268035.10_1_15:99506776-99506884:+|nuORF	REV__ENST00000268035.10_1_15:99506776-99506884:+|nuORF	MSMS	HCT116MG_D190212_S3	3	517.2343139648438	2	517.234907	1032.45526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.757	1	28.54	28.04	29.04	-0.21696								0	0	0	0.68119	1	10420	10420		32.117	5.2333	1		+		5971	14684	3155	3186	5835	5835					-0.059667982361588656
DEYAPAVF	8	Unmodified	_DEYAPAVF_					0	0	0		ENST00000484214.1_1_1:156263748-156265436:-|nuORF;nc|ENSG00000198715|Q8WWB7-2|GLMP;ENSG00000198715|ENST00000362007|GLMP	ENST00000484214.1_1_1:156263748-156265436:-|nuORF	ENST00000484214.1_1_1:156263748-156265436:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	911.4156494140625	1	911.414525	910.407249	0.65069	0.00059305	0.58624	0.00053431	1.2369	0.0011274	911.4148722140096	49.389	0.26196	49.073	48.87	49.132	-0.31596					7	4	2	0	0	0	0.060038	1	18609	18609		112.56	72.11	1	3168300			5972	6256	3156	3187	5836	5836					-0.051538721561882994
DEYDFYRSF	9	Unmodified	_DEYDFYRSF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;EXOSC10|p.I202Nfs*17|1|0.1|ENSG00000171824|chr1:11091052-11091053|-/T|frameshift_variant;EXOSC10|p.N179Ifs*84|1|0.05|ENSG00000171824|chr1:11091121-11091121|T/-|frameshift_variant	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	HCT116MG_D190212_S2	2	621.2592163085938	2	621.259111	1240.50367	0.48826	0.00030334	-0.7115	-0.00044202	-0.22324	-0.00013869	621.2592149156812	51.634	0.25667	51.45	51.27	51.527	-0.18369					7	4	2	0	0	0	0.051033	1	19830	19830		74.2	45.705	1	20331000			5973	5214	3157	3188	5837	5837					-0.10696349386921611
DEYDFYRSF	9	Unmodified	_DEYDFYRSF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;EXOSC10|p.I202Nfs*17|1|0.1|ENSG00000171824|chr1:11091052-11091053|-/T|frameshift_variant;EXOSC10|p.N179Ifs*84|1|0.05|ENSG00000171824|chr1:11091121-11091121|T/-|frameshift_variant	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	HCT116MG_D190212_S3	3	621.259765625	2	621.259111	1240.50367	0.39698	0.00024663	0.34298	0.00021308	0.73996	0.00045971	621.2593337691164	51.687	0.36641	51.377	51.226	51.592	-0.31073					15	6	3	0	0	0	0.0035183	1	19536	19536		157.8	93.835	1	12398000			5974	5214	3157	3188	5838	5838					-0.10696349386921611
DEYDFYRSF	9	Unmodified	_DEYDFYRSF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;EXOSC10|p.I202Nfs*17|1|0.1|ENSG00000171824|chr1:11091052-11091053|-/T|frameshift_variant;EXOSC10|p.N179Ifs*84|1|0.05|ENSG00000171824|chr1:11091121-11091121|T/-|frameshift_variant	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	HCT116MG_D190212_S4	4	621.7610473632812	2	621.259111	1240.50367	0.37673	0.00023405	0.72843	0.00045254	1.1052	0.00068659	621.7610907924815	51.734	0.25983	51.384	51.254	51.514	-0.35028					6	4	2	0	0	0	0.5435	1	19294	19294		14.405	10.461	1	3664200			5975	5214	3157	3188	5839	5839					-0.10696349386921611
DEYDYLFKV	9	Unmodified	_DEYDYLFKV_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	HCT116MG_D190212_S2	2	596.2824096679688	2	596.282054	1190.54956	0.6533	0.00038955	0.26148	0.00015592	0.91478	0.00054547	596.2820581050581	55.232	0.30453	55.044	54.816	55.121	-0.18797					12	5	4	0	0	0	0.0067688	1	21308	21308		122.18	78.321	1	208850000			5976	1908	3158	3189	5840	5840					-0.03809704204672926
DEYDYLFKV	9	Unmodified	_DEYDYLFKV_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	HCT116MG_D190212_S3	3	596.2824096679688	2	596.282054	1190.54956	0.62565	0.00037306	-0.13647	-8.1375E-05	0.48918	0.00029169	596.28195074817	55.349	0.20907	55.057	54.927	55.136	-0.2918					7	3	3	0	0	0	0.047849	1	21003	21003		75.761	35.804	1	10045000			5977	1908	3158	3189	5841	5841					-0.03809704204672926
DEYDYLFKV	9	Unmodified	_DEYDYLFKV_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MSMS	HCT116MG_D190212_S4	4	596.2815551757812	2	596.282054	1190.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.404	1	55.087	54.587	55.587	-0.31774								0	0	0	0.64932	1	20744	20744		21.537	8.4945	1				5978	1908	3158	3189	5842	5842					-0.03809704204672926
DEYDYLFKV	9	Unmodified	_DEYDYLFKV_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MATCH	HCT116MG_D190212_S1	1		2	596.282054	1190.54956	0.6645	0.00039623	0.021439	1.2784E-05	0.68594	0.00040902	596.2817969361173	55.07	0.15254	55.07	54.943	55.095	0	0.012617	8.5232E-05	NaN	122.18	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33196000			5979	1908	3158	3189							-0.03809704204672926
DEYEKLQVL	9	Unmodified	_DEYEKLQVL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	568.7954711914062	2	568.795329	1135.5761	0.37579	0.00021375	-0.026109	-1.4851E-05	0.34968	0.0001989	568.795360490427	45.388	0.31147	45.388	45.244	45.555	0					12	5	3	0	0	0	0.0050238	1	17213	17213		137.42	65.502	1	29644000			5980	741	3159	3190	5843	5843					0.01373984686665608
DEYEKLQVL	9	Unmodified	_DEYEKLQVL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	568.7960205078125	2	568.795329	1135.5761	0.36813	0.00020939	0.25046	0.00014246	0.61858	0.00035185	568.7953964791345	45.477	0.51484	45.385	45.101	45.616	-0.092472					25	9	4	0	0	0	0.0063854	1	17264	17264		125.53	53.607	1	170840000			5981	741	3159	3190	5844	5844					0.01373984686665608
DEYEKLQVL	9	Unmodified	_DEYEKLQVL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1136.584228515625	1	1136.58338	1135.5761	0.55384	0.00062949	0.25441	0.00028915	0.80825	0.00091864	1136.5836302128048	45.426	0.20641	45.334	45.256	45.462	-0.092472					5	3	2	0	0	0	0.0058997	1	17312	17312		129.77	51.044	1	11858000			5982	741	3159	3190	5845	5845					0.01373984686665608
DEYEKLQVL	9	Unmodified	_DEYEKLQVL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	568.7955932617188	2	568.795329	1135.5761	0.54921	0.00031239	-0.12411	-7.0593E-05	0.4251	0.00024179	568.7952154437422	45.694	0.41578	45.383	45.2	45.616	-0.31094					18	7	3	0	0	0	0.0023719	1	17113	17113		185.05	92.559	1	29553000			5983	741	3159	3190	5846	5846					0.01373984686665608
DEYEKLQVL	9	Unmodified	_DEYEKLQVL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	568.7954711914062	2	568.795329	1135.5761	0.57581	0.00032752	-0.50875	-0.00028937	0.067058	3.8142E-05	568.7952027840075	45.766	0.25625	45.394	45.245	45.501	-0.37206					7	4	2	0	0	0	0.0050238	1	16910	16910		137.42	55.534	1	8966200			5984	741	3159	3190	5847	5847					0.01373984686665608
DEYGAKDY	8	Unmodified	_DEYGAKDY_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000462306.5_1_2:128047812-128051699:-|nuORF;ENST00000490062.1_1_2:128050061-128051699:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MSMS	HCT116MG_D190212_S3	3	480.26715087890625	2	480.700897	959.387241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.656	1	23.616	23.116	24.116	-0.03968								0	0	0	0.8837	1	8363	8363		14.838	0.25658	1				5985	4583	3160	3191	5848	5848					-0.09407667886796389
DEYGVSQAL	9	Unmodified	_DEYGVSQAL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MULTI-MSMS	HCT116MG_D190212_S3	3	981.45263671875	1	981.452367	980.445091	0.76694	0.00075271	0.14757	0.00014483	0.91451	0.00089754	981.4521277945677	40.49	0.25992	40.189	40.059	40.319	-0.30161					6	4	2	0	0	0	0.0066233	1	15041	15041		123.45	52.317	1	4172500			5986	2974	3161	3192	5849	5849					-0.045914059613664904
DEYIAIAK	8	Unmodified	_DEYIAIAK_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1;RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant;RCOR1|p.N307Ifs*32|1|0.37|ENSG00000089902|chr14:102714480-102714480|A/-|frameshift_variant;RCOR1|p.E299Kfs*40|1|0.42|ENSG00000089902|chr14:102714453-102714453|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	HCT116MG_D190212_S1	1	461.7475891113281	2	461.74765	921.480748	0.1613	7.4478E-05	-0.10975	-5.0677E-05	0.051546	2.3801E-05	461.74756967224124	34.185	0.31291	34.185	34.024	34.337	0					10	5	3	0	0	0	0.42581	1	12691	12691		47.749	17.112	1	11618000			5987	1534	3162	3193	5850	5850					0.01686676286283273
DEYIAIAK	8	Unmodified	_DEYIAIAK_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1;RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant;RCOR1|p.N307Ifs*32|1|0.37|ENSG00000089902|chr14:102714480-102714480|A/-|frameshift_variant;RCOR1|p.E299Kfs*40|1|0.42|ENSG00000089902|chr14:102714453-102714453|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	HCT116MG_D190212_S2	2	461.7478942871094	2	461.74765	921.480748	0.32632	0.00015068	0.1578	7.2862E-05	0.48412	0.00022354	461.7476064379912	34.325	0.31121	34.15	34.02	34.331	-0.17512					8	5	2	0	0	0	0.33298	1	12794	12794		56.177	18.203	1	27391000			5988	1534	3162	3193	5851	5851					0.01686676286283273
DEYIAIAK	8	Unmodified	_DEYIAIAK_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1;RCOR3|p.T133Lfs*7|1|0.26|ENSG00000117625|chr1:211278165-211278165|A/-|frameshift_variant;RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant;RCOR1|p.N307Ifs*32|1|0.37|ENSG00000089902|chr14:102714480-102714480|A/-|frameshift_variant;RCOR1|p.E299Kfs*40|1|0.42|ENSG00000089902|chr14:102714453-102714453|A/-|frameshift_variant;nc|ENSG00000117625|Q9P2K3-2|RCOR3	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	HCT116MG_D190212_S2	2	922.4899291992188	1	922.488024	921.480748	1.0248	0.00094538	0.40815	0.00037652	1.433	0.0013219	922.488276589217	34.325	0.20776	34.15	34.072	34.279	-0.17512					5	3	2	0	0	0	0.079196	1	12804	12804		99.799	49.866	1	15908000			5989	1534	3162	3193	5852	5852					0.01686676286283273
DEYKGKLQVF	10	Unmodified	_DEYKGKLQVF_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant;ITPR3|p.K608Sfs*66|1|0.34|ENSG00000096433|chr6:33667898-33667898|A/-|frameshift_variant;ITPR3|p.G531Vfs*50|1|0.15|ENSG00000096433|chr6:33667164-33667164|G/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	613.8257446289062	2	613.824421	1225.63429	0.40535	0.00024882	0.83862	0.00051477	1.244	0.00076358	613.824655311977	40.148	0.36397	40.076	39.894	40.258	-0.072838					15	6	3	0	0	0	0.099369	1	15142	15142		74.2	42.931	1	30574000			5990	1619	3163	3194	5853	5853					0.03049666331935441
DEYKPPKF	8	Unmodified	_DEYKPPKF_					0	0	0		SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant;ENSG00000162695|ENST00000357650|SLC30A7	SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant	SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2611083984375	2	512.260925	1022.5073	0.5337	0.00027339	-0.07189	-3.6826E-05	0.46181	0.00023657	512.2607821585854	33.283	0.60552	33.283	32.794	33.4	0					19	11	3	0	0	0	0.26254	1	12316	12316		62.573	35.689	1	9196700			5991	4544	3164	3195	5854	5854					-0.0030563482237084827
DEYKPPKF	8	Unmodified	_DEYKPPKF_					0	0	0		SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant;ENSG00000162695|ENST00000357650|SLC30A7	SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant	SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2616577148438	2	512.260925	1022.5073	0.59051	0.00030249	0.076473	3.9174E-05	0.66698	0.00034167	512.2609239449428	33.461	0.62013	33.268	32.81	33.43	-0.19296					25	11	3	0	0	0	0.061818	2	12400	12379;12400		110.67	54.498	1	42697000			5992	4544	3164	3195	5855;5856	5856					-0.0030563482237084827
DEYKPPKF	8	Unmodified	_DEYKPPKF_					0	0	0		SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant;ENSG00000162695|ENST00000357650|SLC30A7	SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant	SLC30A7|p.I358Sfs*15|1|0.24|ENSG00000162695|chr1:100965907-100965908|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	512.2608032226562	2	512.260925	1022.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.787	1	33.497	32.997	33.997	-0.29013								0	0	0	0.62515	1	12413	12413		36.127	15.673	1				5993	4544	3164	3195	5857	5857					-0.0030563482237084827
DEYKVTAF	8	Unmodified	_DEYKVTAF_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	HCT116MG_D190212_S2	2	486.73779296875	2	486.737283	971.460012	0.38651	0.00018813	-0.061863	-3.0111E-05	0.32465	0.00015802	486.7372039687442	40.698	0.41322	40.628	40.468	40.881	-0.069626					13	7	3	0	0	0	0.065346	1	15344	15344		106.94	37.835	1	41137000			5994	774	3165	3196	5858	5858					-0.026859140933765957
DEYKVTAF	8	Unmodified	_DEYKVTAF_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	HCT116MG_D190212_S3	3	486.7373352050781	2	486.737283	971.460012	0.36665	0.00017846	-0.051728	-2.5178E-05	0.31493	0.00015329	486.73717165957135	40.904	0.41672	40.602	40.423	40.84	-0.30183					19	7	3	0	0	0	0.065346	1	15186	15186		106.94	33.972	1	32972000			5995	774	3165	3196	5859	5859					-0.026859140933765957
DEYKVTAF	8	Unmodified	_DEYKVTAF_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	HCT116MG_D190212_S3	3	972.4682006835938	1	972.467289	971.460012	0.73958	0.00071922	0.47749	0.00046435	1.2171	0.0011836	972.4675664615273	40.907	0.3126	40.606	40.423	40.736	-0.30185					9	5	2	0	0	0	0.061818	1	15207	15207		110.67	38.752	1	14271000			5996	774	3165	3196	5860	5860					-0.026859140933765957
DEYKVTAF	8	Unmodified	_DEYKVTAF_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	HCT116MG_D190212_S4	4	486.7374267578125	2	486.737283	971.460012	-0.060391	-2.9395E-05	0.50339	0.00024502	0.443	0.00021563	486.73742765146125	41.007	0.33084	40.63	40.471	40.802	-0.37732					15	6	3	0	0	0	0.094232	1	15068	15068		96.367	36.293	1	17851000			5997	774	3165	3196	5861	5861					-0.026859140933765957
DEYKVTAF	8	Unmodified	_DEYKVTAF_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	HCT116MG_D190212_S4	4	972.4678955078125	1	972.467289	971.460012	0.60193	0.00058536	0.12047	0.00011715	0.7224	0.00070251	972.4673485054319	41.027	0.24488	40.65	40.471	40.716	-0.37732					7	4	2	0	0	0	0.079196	1	15079	15079		99.799	21.071	1	7391700			5998	774	3165	3196	5862	5862					-0.026859140933765957
DEYLIPQQGF	10	Unmodified	_DEYLIPQQGF_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	HCT116MG_D190212_S3	3	605.294677734375	2	605.292953	1208.57135	0.70575	0.00042719	0.63398	0.00038374	1.3397	0.00081093	605.2931997796868	53.05	0.4183	52.747	52.512	52.931	-0.30305					15	7	3	0	0	0	0.095673	1	20096	20096		74.929	42.624	1	6975000			5999	3956	3166	3197	5863	5863					-0.02458899456087238
DEYLIPQQGF	10	Unmodified	_DEYLIPQQGF_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	HCT116MG_D190212_S2	2		2	605.292953	1208.57135	0.70456	0.00042646	-0.077666	-4.7011E-05	0.62689	0.00037945	605.7943055505367	52.819	0.30868	52.63	52.449	52.758	-0.18922	-0.058816	-0.00028291	NaN	74.929	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9443900			6000	3956	3166	3197							-0.02458899456087238
DEYLVTSI	8	Unmodified	_DEYLVTSI_					0	0	0		MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	939.4669799804688	1	939.466955	938.459678	0.62646	0.00058854	-0.46495	-0.00043681	0.16151	0.00015173	939.4664638429814	50.911	0.31007	50.732	50.604	50.914	-0.17868					6	5	2	0	0	0	0.15838	1	19555	19555		81.864	7.4677	1	9990500			6001	2157	3167	3198	5864	5864					-0.012013338132078388
DEYLVTSI	8	Unmodified	_DEYLVTSI_					0	0	0		MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant;nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MTMR4|p.F1143Lfs*14|1|0.15|ENSG00000108389|chr17:58491822-58491823|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	939.466955	938.459678	0.53495	0.00050256	0.28856	0.00027109	0.8235	0.00077365	939.4672853318324	51.143	0.3665	50.831	50.648	51.015	-0.31166	0.049277	0.00039518	NaN	81.864	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6428700			6002	2157	3167	3198							-0.012013338132078388
DEYNVESI	8	Unmodified	_DEYNVESI_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000494197.1_1_5:31847735-31848014:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	HCT116MG_D190212_S3	3	968.42138671875	1	968.420733	967.413456	0.79389	0.00076882	-0.45562	-0.00044123	0.33827	0.00032758	968.4199573982171	40.907	0.2605	40.606	40.475	40.736	-0.30185					6	4	2	0	0	0	0.09113	1	15227	15227		97.075	15.462	1	4831600			6003	2762	3168	3199	5865	5865					-0.07155398715326555
DEYQFVERL	9	Unmodified	_DEYQFVERL_					0	0	0		ENSG00000149792|ENST00000279242|MRPL49	ENSG00000149792|ENST00000279242|MRPL49	ENSG00000149792|ENST00000279242|MRPL49	MULTI-SECPEP	HCT116MG_D190212_S2	2	599.331298828125	2	599.790578	1197.5666	0.32159	0.00019289	-1.2303	-0.0007379	-0.90868	-0.00054502	599.7900781717137	49.786	0.30586	49.622	49.483	49.789	-0.16369					10	5	3	0	0	0	0.18368	1	19063	19063		42.312	14.684	1	48569000			6004	4073	3169	3200	5866	5866					-0.024277835988414154
DEYQFVERL	9	Unmodified	_DEYQFVERL_					0	0	0		ENSG00000149792|ENST00000279242|MRPL49	ENSG00000149792|ENST00000279242|MRPL49	ENSG00000149792|ENST00000279242|MRPL49	MSMS	HCT116MG_D190212_S3	3	599.790771484375	2	599.790578	1197.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.004	1	49.689	49.189	50.189	-0.31525								0	0	0	0.36226	1	18844	18844		35.612	12.876	1				6005	4073	3169	3200	5867	5867					-0.024277835988414154
DEYRQDYDA	9	Unmodified	_DEYRQDYDA_					0	0	0		nc|ENSG00000114503|P52298-3|NCBP2;ENSG00000114503|ENST00000321256|NCBP2;ENST00000463783.1_1_3:196663884-196664019:-|nuORF;ENST00000467803.1_1_3:196662357-196664019:-|nuORF;nc|ENSG00000114503|P52298-2|NCBP2	nc|ENSG00000114503|P52298-3|NCBP2	nc|ENSG00000114503|P52298-3|NCBP2	MULTI-SECPEP	HCT116MG_D190212_S3	3	587.23779296875	2	587.736	1173.45745	0.46634	0.00027408	0.12454	7.3199E-05	0.59088	0.00034728	587.7358982457215	23.149	0.20853	23.109	23.031	23.239	-0.03968					5	3	2	0	0	0	0.22987	1	8188	8188		20.581	17.3	1	2406800			6006	2423	3170	3201	5868	5868					-0.12234414288991502
DEYVNVKDF	9	Unmodified	_DEYVNVKDF_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	564.7643432617188	2	564.764029	1127.5135	0.30752	0.00017368	0.25234	0.00014251	0.55986	0.00031619	564.7642102945689	43.102	0.26123	43.102	43.003	43.264	0					5	4	2	0	0	0	0.20753	1	16298	16298		33.445	14.083	1	8980300			6007	5119	3171	3202	5869	5869					-0.045151613815278324
DEYVNVKDF	9	Unmodified	_DEYVNVKDF_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	564.7646484375	2	564.764029	1127.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.385	1	43.081	42.581	43.581	-0.30472								0	0	0	0.14408	1	16187	16187		51.415	25.147	1				6008	5119	3171	3202	5870	5870					-0.045151613815278324
DEYVNVKDF	9	Unmodified	_DEYVNVKDF_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	565.2655029296875	2	564.764029	1127.5135	0.32116	0.00018138	0.45643	0.00025777	0.77759	0.00043915	564.7642965627078	43.416	0.18546	43.041	42.978	43.163	-0.37433					9	5	2	0	0	0	0.26707	2	15963	15963;15971		34.222	9.2307	1	3727700			6009	5119	3171	3202	5871;5872	5871					-0.045151613815278324
DFCCEGCG	8	Unmodified	_DFCCEGCG_					0	0	0		ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	ENSG00000198833|ENST00000435041|UBE2J1	MSMS	HCT116MG_D190212_S4	4	417.1179504394531	2	417.116774	832.218996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.79	1	36.405	35.905	36.905	-0.38486								0	0	0	0.8837	1	13477	13477		0.69038	0.69038	1				6010	6280	3172	3203	5873	5873					-0.20382512668118125
DFEVGGAA	8	Unmodified	_DFEVGGAA_					0	0	0		NGF|p.F113Sfs*45|1|0.22|ENSG00000134259|chr1:115286460-115286460|G/-|frameshift_variant;ENSG00000134259|ENST00000369512|NGF	NGF|p.F113Sfs*45|1|0.22|ENSG00000134259|chr1:115286460-115286460|G/-|frameshift_variant	NGF|p.F113Sfs*45|1|0.22|ENSG00000134259|chr1:115286460-115286460|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	383.1749572753906	2	383.174318	764.334084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.068	1	56.789	56.289	57.289	-0.27913								0	0	0	0.8837	1	21679	21679		0.79363	0	1				6011	3272	3173	3204	5874	5874					-0.057510008787971856
DFEYSTQSY	9	Unmodified	_DFEYSTQSY_					0	0	0		ENST00000522063.1_1_8:27957393-27970048:+|nuORF;ENST00000521938.5_1_8:27950677-27967964:+|nuORF;ELP3|p.T241Qfs*24|1|0.05|ENSG00000134014|chr8:28129605-28129605|A/-|frameshift_variant;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3	ENST00000522063.1_1_8:27957393-27970048:+|nuORF	ENST00000522063.1_1_8:27957393-27970048:+|nuORF	MSMS	HCT116MG_D190212_S4	4	570.229736328125	2	570.230019	1138.44548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.424	1	40.046	39.546	40.546	-0.37828								0	0	0	0.3894	1	14830	14830		34.102	13.649	1				6012	772	3174	3205	5875	5875					-0.11820031032175393
DFILVLHRYYR	11	Unmodified	_DFILVLHRYYR_					0	0	0		nc|ENSG00000115592|Q9UGI9-2|PRKAG3;ENSG00000115592|ENST00000439262|PRKAG3	nc|ENSG00000115592|Q9UGI9-2|PRKAG3	nc|ENSG00000115592|Q9UGI9-2|PRKAG3	MSMS	HCT116MG_D190212_S3	3	747.9133911132812	2	747.914436	1493.81432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.244	1	48.928	48.428	49.428	-0.31596								0	0	0	0.95636	1	18539	18539		2.9952	0.26005	1				6013	2475	3175	3206	5876	5876					0.08716390059612422
DFIVKVLPPV	10	Unmodified	_DFIVKVLPPV_					0	0	0		ENSG00000182782|ENST00000328880|HCAR2	ENSG00000182782|ENST00000328880|HCAR2	ENSG00000182782|ENST00000328880|HCAR2	MSMS	HCT116MG_D190212_S4	4	376.2329406738281	3	376.23387	1125.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.529	1	57.235	56.735	57.735	-0.29465								0	0	0	0.96769	1	21596	21596		0.77653	0.50751	1				6014	5687	3176	3207	5877	5877					0.12196936584973628
DFKKRNSS	8	Unmodified	_DFKKRNSS_					0	0	0			REV__tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	REV__tr|U7SM12|U7SM12_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02012PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	490.75604248046875	2	491.259248	980.503943	0.026125	1.2834E-05	-2.7634	-0.0013576	-2.7373	-0.0013447	491.25777833648436	22.553	0.31161	22.315	22.082	22.393	-0.23758					6	5	2	0	0	0	0.31097	1	7853	7853		16.942	7.5949	1	4213200	+		6015	17717	3177	3208	5878	5878					0.012911151236153273
DFKPLSLLRA	10	Unmodified	_DFKPLSLLRA_					0	0	0		ENST00000493587.1_1_8:100880383-100883116:+|nuORF	ENST00000493587.1_1_8:100880383-100883116:+|nuORF	ENST00000493587.1_1_8:100880383-100883116:+|nuORF	MSMS	HCT116MG_D190212_S3	3	387.2320251464844	3	387.232641	1158.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.836	1	61.597	61.097	62.097	-0.2387								0	0	0	0.96337	1	23609	23609		1.7423	0.96574	1				6016	8363	3178	3209	5879	5879					0.10310266811143265
DFMEKVKRK	9	Unmodified	_DFMEKVKRK_					0	0	0			REV__BMS1|p.L832V|1|0.11|ENSG00000165733|chr10:42817408-42817408|T/G|missense_variant	REV__BMS1|p.L832V|1|0.11|ENSG00000165733|chr10:42817408-42817408|T/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	394.2224426269531	3	394.221748	1179.64341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.511	1	58.228	57.728	58.728	-0.28305								0	0	0	0.76991	1	21993	21993		1.1933	0	1		+		6017	10048	3179	3210	5880	5880					0.06077736416636981
DFTPAVHA	8	Unmodified	_DFTPAVHA_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	857.415283203125	1	857.415194	856.407917	0.40525	0.00034747	-0.44333	-0.00038012	-0.038075	-3.2646E-05	857.4147109599733	30.235	0.20636	29.951	29.822	30.028	-0.28453					6	3	2	0	0	0	0.6854	1	11117	11117		24.674	3.8027	1	47483000		+	6018	545	3180	3211	5881	5881					-0.026030327164789924
DFVDSICIPI	10	Unmodified	_DFVDSICIPI_					0	0	0			REV__ENST00000592504.5_1_19:9451985-9452105:+|nuORF	REV__ENST00000592504.5_1_19:9451985-9452105:+|nuORF	MSMS	HCT116MG_D190212_S1	1	561.27978515625	2	561.281	1120.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.553	1	56.553	56.053	57.053	0								0	0	0	0.81484	1	21744	21744		26.884	11.036	1		+		6019	16700	3181	3212	5882	5882					-0.008004562141422866
DFWRFRGLR	9	Unmodified	_DFWRFRGLR_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MSMS	HCT116MG_D190212_S3	3	418.2278747558594	3	418.228113	1251.66251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.782	1	48.466	47.966	48.966	-0.31596								0	0	0	0.76948	1	18357	18357		2.7352	0.30041	1				6020	1916	3182	3213	5883	5883					0.046744538225539145
DFWRFRGLR	9	Unmodified	_DFWRFRGLR_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MSMS	HCT116MG_D190212_S4	4	418.2275085449219	3	418.228113	1251.66251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.867	1	48.502	48.002	49.002	-0.365								0	0	0	0.76948	1	18107	18107		2.7352	0.82882	1				6021	1916	3182	3213	5884	5884					0.046744538225539145
DFYSRYFAP	9	Unmodified	_DFYSRYFAP_					0	0	0		ENST00000277795.8_1_10:70048210-70048411:-|nuORF;nc|ENSG00000108187|P30039-2|PBLD;ENSG00000108187|ENST00000358769|PBLD	ENST00000277795.8_1_10:70048210-70048411:-|nuORF	ENST00000277795.8_1_10:70048210-70048411:-|nuORF	MSMS	HCT116MG_D190212_S4	4	389.181884765625	3	389.181946	1164.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.18	1	45.808	45.308	46.308	-0.37206								0	0	0	0.76948	1	17051	17051		2.7352	0.23671	1				6022	2151	3183	3214	5885	5885					-0.051671339364247615
DGAVAHQAAGP	11	Unmodified	_DGAVAHQAAGP_					0	0	0		ENST00000339570.9_1_12:125348144-125348447:-|nuORF	ENST00000339570.9_1_12:125348144-125348447:-|nuORF	ENST00000339570.9_1_12:125348144-125348447:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	497.24072265625	2	497.241055	992.467557	0.0528	2.6255E-05	0.35835	0.00017818	0.41115	0.00020444	497.24120435408673	17.206	0.41317	17.035	16.76	17.173	-0.17046					11	7	2	0	0	0	0.70377	1	5689	5689		20.415	1.0526	1	1034500			6023	7207	3184	3215	5886	5886					-0.028977617731015926
DGCDNDND	8	Unmodified	_DGCDNDND_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2;REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000081479|ENST00000649046|LRP2	MSMS	HCT116MG_D190212_S2	2	434.1239318847656	2	434.124696	866.23484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.993	1	61.857	61.357	62.357	-0.13585								0	0	0	0.8837	1	24021	24021		0	0	1		+		6024	10879;11761	3185	3216	5887	5887					-0.20362811625875565
DGCDNDND	8	Unmodified	_DGCDNDND_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2;REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000081479|ENST00000649046|LRP2	MSMS	HCT116MG_D190212_S2	2	434.1238708496094	2	434.124696	866.23484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.566	1	62.437	61.937	62.937	-0.12924								0	0	0	0.8837	1	24252	24252		0	0	1		+		6025	10879;11761	3185	3216	5888	5888					-0.20362811625875565
DGCDNDND	8	Unmodified	_DGCDNDND_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2;REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000081479|ENST00000649046|LRP2	MSMS	HCT116MG_D190212_S2	2	434.1236877441406	2	434.124696	866.23484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.158	1	63.028	62.528	63.528	-0.12924								0	0	0	0.8837	1	24487	24487		0	0	1		+		6026	10879;11761	3185	3216	5889	5889					-0.20362811625875565
DGCDNSGN	8	Unmodified	_DGCDNSGN_					0	0	0			REV__LRP1B|p.D2660N|1|0.34|ENSG00000168702|chr2:140525892-140525892|C/T|missense_variant	REV__LRP1B|p.D2660N|1|0.34|ENSG00000168702|chr2:140525892-140525892|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	391.1250915527344	2	391.124499	780.234446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.337	1	62.201	61.701	62.701	-0.13585								0	0	0	0.8837	1	24160	24160		0.6015	0.6015	1		+		6027	16981	3186	3217	5890	5890					-0.1644618655506065
DGFLDILFR	9	Unmodified	_DGFLDILFR_					0	0	0			REV__ENST00000318887.7_1_3:88199027-88199249:+|nuORF	REV__ENST00000318887.7_1_3:88199027-88199249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	548.29541015625	2	548.295299	1094.57605	0.32199	0.00017655	0.42035	0.00023047	0.74234	0.00040702	548.2954797014114	48.381	0.66914	48.381	48.048	48.717	0					22	12	2	0	0	0	0.71345	1	18352	18352		4.3292	0	1	33993000	+		6028	14875	3187	3218	5891	5891					0.03254029477329823
DGGGDDDD	8	Unmodified	_DGGGDDDD_					0	0	0			REV__SPOCK3|p.D427G|1|0.37|ENSG00000196104|chr4:166734952-166734952|T/C|missense_variant	REV__SPOCK3|p.D427G|1|0.37|ENSG00000196104|chr4:166734952-166734952|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	765.2167358398438	1	765.216947	764.209671	0.83664	0.00064021	-0.62027	-0.00047464	0.21637	0.00016557	765.2163583458974	18.182	0.46916	18.182	18.037	18.506	0					13	8	2	0	0	0	0.88026	1	6232	6232		0	0	1	9020900	+		6029	15333	3188	3219	5892	5892					-0.18186543156798507
DGGGDDDD	8	Unmodified	_DGGGDDDD_					0	0	0			REV__SPOCK3|p.D427G|1|0.37|ENSG00000196104|chr4:166734952-166734952|T/C|missense_variant	REV__SPOCK3|p.D427G|1|0.37|ENSG00000196104|chr4:166734952-166734952|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	765.216947	764.209671	0.83664	0.00064021	-0.62027	-0.00047464	0.21637	0.00016557	765.2163583458974	18.182	0.46916	18.182	18.037	18.506	0	-0.069072	6.1277E-05	NaN	0	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9020900	+		6030	15333	3188	3219							-0.18186543156798507
DGGGDDDD	8	Unmodified	_DGGGDDDD_					0	0	0			REV__SPOCK3|p.D427G|1|0.37|ENSG00000196104|chr4:166734952-166734952|T/C|missense_variant	REV__SPOCK3|p.D427G|1|0.37|ENSG00000196104|chr4:166734952-166734952|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	765.216947	764.209671	0.76728	0.00058714	-0.77916	-0.00059623	-0.011875	-9.0873E-06	765.216224910816	18.5	0.77729	18.32	17.994	18.771	-0.18052	0.069072	-6.0306E-05	NaN	0	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5426200	+		6031	15333	3188	3219							-0.18186543156798507
DGGSPMTM	8	Unmodified	_DGGSPMTM_					0	0	0		SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant;ENSG00000187122|ENST00000266058|SLIT1	SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant	SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	795.3023071289062	1	795.301152	794.293875	1.1255	0.00089512	0.57349	0.0004561	1.699	0.0013512	795.3015091101828	47.522	0.30988	47.401	47.233	47.543	-0.12175					9	5	2	0	0	0	0.79834	1	18120	18120		11.64	11.64	1	34352000			6032	5928	3189	3220	5893	5893					-0.11150006865227624
DGGTWHEFP	9	Unmodified	_DGGTWHEFP_					0	0	0		ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	MULTI-MSMS	HCT116MG_D190212_S4	4	523.2213745117188	2	523.222331	1044.43011	0.2523	0.00013201	-1.626	-0.00085075	-1.3737	-0.00071874	523.2211751135848	32.342	0.25938	31.962	31.793	32.053	-0.37924					7	4	2	0	0	0	0.57626	1	11770	11770		12.532	0.29089	1	2706200			6033	6518	3190	3221	5894	5894					-0.0903285303870689
DGHLFQVEY	9	Unmodified	_DGHLFQVEY_					0	0	0		nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;PSMA8|p.N213Kfs*3|1|0.21|ENSG00000154611|chr18:26179084-26179085|-/A|frameshift_variant;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000101182|ENST00000370873|PSMA7;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8	nc|ENSG00000101182|O14818-4|PSMA7	nc|ENSG00000101182|O14818-4|PSMA7	MULTI-MSMS	HCT116MG_D190212_S2	2	554.2590942382812	2	554.258914	1106.50327	0.66526	0.00036872	-0.34425	-0.0001908	0.32101	0.00017792	554.2588316907431	47.794	0.31007	47.662	47.48	47.79	-0.13281					10	5	2	0	0	0	0.0090481	1	18253	18253		115.69	69.671	1	50807000			6034	1758	3191	3222	5895	5895					-0.04571724316087966
DGHLFQVEY	9	Unmodified	_DGHLFQVEY_					0	0	0		nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;PSMA8|p.N213Kfs*3|1|0.21|ENSG00000154611|chr18:26179084-26179085|-/A|frameshift_variant;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000101182|ENST00000370873|PSMA7;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8	nc|ENSG00000101182|O14818-4|PSMA7	nc|ENSG00000101182|O14818-4|PSMA7	MULTI-MSMS	HCT116MG_D190212_S3	3	554.2573852539062	2	554.258914	1106.50327	0.29383	0.00016286	-0.76691	-0.00042507	-0.47308	-0.00026221	554.2582459975175	48.047	0.26081	47.731	47.566	47.827	-0.31596					6	4	2	0	0	0	0.097615	1	18074	18074		58.679	31.795	1	5486100			6035	1758	3191	3222	5896	5896					-0.04571724316087966
DGIVDKFQKNN	11	Unmodified	_DGIVDKFQKNN_					0	0	0		tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1	tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1	tr|U7STX2|U7STX2_FUSNUPhosphoribosylamine--glycineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purDPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	639.3279418945312	2	639.327859	1276.64116	0.36273	0.0002319	0.095398	6.099E-05	0.45812	0.00029289	639.3279861703242	31.713	1.1921	31.339	30.607	31.799	-0.3735					63	22	4	0	0	0	0.71776	1	11592	11592		15.248	15.248	1	37310000			6036	18456	3192	3223	5897	5897					0.013909792125332388
DGKINAWDLYY	11	Unmodified	_DGKINAWDLYY_					0	0	0		ENST00000506539.5_1_5:65018131-65088776:+|nuORF;NLN|p.G628Dfs*29|1|0.22|ENSG00000123213|chr5:65812290-65812290|G/-|frameshift_variant;ENSG00000123213|ENST00000380985|NLN	ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MSMS	HCT116MG_D190212_S4	4	679.3268432617188	2	679.324785	1356.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.741	1	15.58	15.08	16.08	-0.16173								0	0	0	0.95581	1	5099	5099		3.2813	0.28607	1				6037	2794	3193	3224	5898	5898					-0.02903539018984702
DGKPGPVGPA	10	Unmodified	_DGKPGPVGPA_					0	0	0			REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	894.46826171875	1	894.467958	893.460681	1.1834	0.0010585	-0.61521	-0.00055028	0.56816	0.00050821	894.4675069346491	28.773	0.67699	28.551	28.161	28.838	-0.22195					24	12	3	0	0	0	0.12519	1	10417	10417		69.105	4.8686	1	14858000	+		6038	10237	3194	3225	5899	5899					0.009689253463420755
DGKPGPVGPA	10	Unmodified	_DGKPGPVGPA_					0	0	0			REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	894.4676513671875	1	894.467958	893.460681	0.6906	0.00061772	0.026661	2.3848E-05	0.71726	0.00064157	894.4678661447471	28.889	0.67495	28.548	28.107	28.782	-0.34059					18	12	2	0	0	0	0.1448	1	10398	10398		65.235	0.9987	1	13091000	+		6039	10237	3194	3225	5900	5900					0.009689253463420755
DGKPGPVGPA	10	Unmodified	_DGKPGPVGPA_					0	0	0			REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	894.467958	893.460681	1.1834	0.0010585	-0.61521	-0.00055028	0.56816	0.00050821	894.4675069346491	28.773	0.67699	28.551	28.161	28.838	-0.22195	0.0015171	-0.00041496	NaN	69.105	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14858000	+		6040	10237	3194	3225							0.009689253463420755
DGKPGPVGPA	10	Unmodified	_DGKPGPVGPA_					0	0	0			REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	894.467958	893.460681	0.6906	0.00061772	0.026661	2.3848E-05	0.71726	0.00064157	894.4678661447471	28.889	0.67495	28.548	28.107	28.782	-0.34059	-0.0015171	0.00015917	NaN	69.105	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13091000	+		6041	10237	3194	3225							0.009689253463420755
DGKSKGIA	8	Unmodified	_DGKSKGIA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MSMS	HCT116MG_D190212_S3	3	388.2178039550781	2	388.21906	774.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.241	1	26.092	25.592	26.592	-0.14924								0	0	0	0.8837	1	9405	9405		4.756	0.42677	1				6042	2442	3195	3226	5901	5901					0.027332538005680362
DGKWRCCSQL	10	Unmodified	_DGKWRCCSQL_					0	0	0		ENST00000519402.5_1_5:156607865-156667213:+|nuORF;ITK|p.E468Vfs*37|1|0.42|ENSG00000113263|chr5:157244423-157244424|-/TG|frameshift_variant;ENSG00000113263|ENST00000422843|ITK	ENST00000519402.5_1_5:156607865-156667213:+|nuORF	ENST00000519402.5_1_5:156607865-156667213:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	597.7906494140625	2	598.270975	1194.5274	0.66898	0.00040023	-0.72569	-0.00043416	-0.056718	-3.3933E-05	598.2706309239396	17.013	0.96791	16.847	16.261	17.229	-0.16664					38	18	3	0	0	0	0.30868	1	5726	5726		11.495	11.495	1	4908600			6043	2375	3196	3227	5902	5902					-0.06208530425715253
DGLGKWTPGE	10	Unmodified	_DGLGKWTPGE_					0	0	0		ENST00000269205.5_1_18:29340660-29340837:-|nuORF	ENST00000269205.5_1_18:29340660-29340837:-|nuORF	ENST00000269205.5_1_18:29340660-29340837:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2598876953125	2	530.258914	1058.50327	0.69114	0.00036648	0.026154	1.3868E-05	0.7173	0.00038035	530.2589393377438	33.284	0.51887	32.902	32.746	33.265	-0.38223					46	33	2	0	0	0	0.65928	1	12081	12081		23.79	1.0535	1	15772000			6044	6916	3197	3228	5903	5903					-0.023637243160919752
DGLGYKKLDP	10	Unmodified	_DGLGYKKLDP_					0	0	0			REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	553.29931640625	2	553.298039	1104.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.882	1	26.719	26.219	27.219	-0.16308								0	0	0	0.85427	1	9664	9664		24.991	1.2012	1		+		6045	17894	3198	3229	5904	5904					0.03341708269135779
DGLKLPADAGP	11	Unmodified	_DGLKLPADAGP_					0	0	0			REV__ARHGEF1|p.E345K|1|0.33|ENSG00000076928|chr19:41896394-41896394|G/A|missense_variant	REV__ARHGEF1|p.E345K|1|0.33|ENSG00000076928|chr19:41896394-41896394|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	527.2822875976562	2	527.282389	1052.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.347	1	21.366	20.866	21.866	0.018446								0	0	0	0.82357	1	7434	7434		29.841	2.2118	1		+		6046	9980	3199	3230	5905	5905					0.026051352350577872
DGLQAAFTTAH	11	Unmodified	_DGLQAAFTTAH_					0	0	0		ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	MULTI-MSMS	HCT116MG_D190212_S3	3	566.276123046875	2	566.275095	1130.53564	0.40775	0.0002309	0.91713	0.00051935	1.3249	0.00075025	566.2755764501159	22.158	0.67737	22.158	21.834	22.511	0.00074577					29	12	3	0	0	0	0.69464	1	7747	7747		23.79	1.0535	1	6479700			6047	4228	3200	3231	5906	5906					-0.024409369131262793
DGLQPGTEYR	10	Unmodified	_DGLQPGTEYR_					0	0	0		COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant;COL7A1|p.P2298Lfs*90|1|0.18|ENSG00000114270|chr3:48572678-48572678|G/-|frameshift_variant;COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant;nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1;COL7A1|p.G2177Wfs*113|1|0.1|ENSG00000114270|chr3:48573864-48573865|-/G|frameshift_variant;COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant;COL7A1|p.P1754Qfs*87|1|0.6|ENSG00000114270|chr3:48579490-48579490|G/-|frameshift_variant;COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant;COL7A1|p.P2029Lfs*177|2|0.43|ENSG00000114270|chr3:48575438-48575438|G/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	568.2728271484375	2	568.272552	1134.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.916	1	19.964	19.464	20.464	0.048107								0	0	0	0.87318	1	6858	6858		19.362	7.8672	1				6048	530	3201	3232	5907	5907					-0.03133240775741797
DGLQPGTEYR	10	Unmodified	_DGLQPGTEYR_					0	0	0		COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant;COL7A1|p.P2298Lfs*90|1|0.18|ENSG00000114270|chr3:48572678-48572678|G/-|frameshift_variant;COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant;nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1;COL7A1|p.G2177Wfs*113|1|0.1|ENSG00000114270|chr3:48573864-48573865|-/G|frameshift_variant;COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant;COL7A1|p.P1754Qfs*87|1|0.6|ENSG00000114270|chr3:48579490-48579490|G/-|frameshift_variant;COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant;COL7A1|p.P2029Lfs*177|2|0.43|ENSG00000114270|chr3:48575438-48575438|G/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	568.273193359375	2	568.272552	1134.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.692	1	19.498	18.998	19.998	-0.19367								0	0	0	0.87318	1	6695	6695		19.362	6.3195	1				6049	530	3201	3232	5908	5908					-0.03133240775741797
DGLSISLTY	9	Unmodified	_DGLSISLTY_					0	0	0		tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	tr|U7SKT2|U7SKT2_FUSNUDNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ligAPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	968.4940795898438	1	968.493504	967.486227	0.54585	0.00052865	-0.27666	-0.00026794	0.26919	0.00026071	968.4930356088103	38.388	0.31343	38.295	38.115	38.428	-0.09301					9	5	2	0	0	0	0.023611	1	14413	14413		92.822	0.16881	1	34998000			6050	18329	3202	3233	5909	5909					0.0011835507808655166
DGNVFTTGF	9	Unmodified	_DGNVFTTGF_					0	0	0		ENST00000547361.1_1_12:109046046-109052582:-|nuORF;ENST00000552030.5_1_12:109042755-109052582:-|nuORF;ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C	ENST00000547361.1_1_12:109046046-109052582:-|nuORF	ENST00000547361.1_1_12:109046046-109052582:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	957.43115234375	1	957.431238	956.423961	0.49112	0.00047021	0.11002	0.00010534	0.60114	0.00057555	957.4312562834685	53.555	0.25721	53.366	53.223	53.48	-0.1894					6	4	2	0	0	0	0.077982	1	20623	20623		62.573	18.714	1	8723200			6051	2268	3203	3234	5910	5910					-0.055993712702274934
DGNVFTTGF	9	Unmodified	_DGNVFTTGF_					0	0	0		ENST00000547361.1_1_12:109046046-109052582:-|nuORF;ENST00000552030.5_1_12:109042755-109052582:-|nuORF;ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;nc|ENSG00000110880|Q9ULV4-3|CORO1C	ENST00000547361.1_1_12:109046046-109052582:-|nuORF	ENST00000547361.1_1_12:109046046-109052582:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	957.4324340820312	1	957.431238	956.423961	0.79279	0.00075904	0.58609	0.00056114	1.3789	0.0013202	957.4314674908846	53.73	0.26141	53.43	53.248	53.509	-0.29946					6	4	2	0	0	0	0.047849	1	20354	20354		75.761	43.455	1	2740600			6052	2268	3203	3234	5911	5911					-0.055993712702274934
DGPGGPSGE	9	Unmodified	_DGPGGPSGE_					0	0	0			REV__ENSG00000124762|ENST00000244741|CDKN1A	REV__ENSG00000124762|ENST00000244741|CDKN1A	MULTI-MSMS	HCT116MG_D190212_S3	3	772.31103515625	1	772.310788	771.303512	0.57029	0.00044044	0.014411	1.1129E-05	0.5847	0.00045157	772.3108285350555	18.255	0.93704	18.331	17.945	18.882	0.076334					28	17	2	0	0	0	0.19218	1	6137	6137		42.095	2.1372	1	2429600	+		6053	11795	3204	3235	5912	5912					-0.09128779263846809
DGRDVRKRRR	10	Unmodified	_DGRDVRKRRR_					0	0	0			REV__ENST00000244745.3_2_6:21596111-21596468:+|nuORF	REV__ENST00000244745.3_2_6:21596111-21596468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	657.386962890625	2	657.3847	1312.75485	0.65151	0.00042829	0.89984	0.00059154	1.5513	0.0010198	657.3852159973471	53.552	1.1969	53.218	52.567	53.764	-0.33473					37	22	2	0	0	0	0.88823	1	19933	19933		1.4819	1.4819	1	3867700	+		6054	14568	3205	3236	5913	5913					0.11097931888775747
DGRVEAIKEA	10	Unmodified	_DGRVEAIKEA_					0	0	0		ENSG00000148218|ENST00000409155|ALAD;nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF	ENSG00000148218|ENST00000409155|ALAD	ENSG00000148218|ENST00000409155|ALAD	MULTI-MSMS	HCT116MG_D190212_S2	2	363.1961364746094	3	363.196256	1086.56694	-0.21911	-7.958E-05	0.24595	8.9329E-05	0.026843	9.7492E-06	363.1962580831711	21.112	0.20838	20.729	20.598	20.807	-0.38288					8	3	3	0	0	0	0.67282	1	7425	7425		15.538	3.3109	1	11526000			6055	4009	3206	3237	5914	5914					0.027116361210119067
DGSEHEGDTPE	11	Unmodified	_DGSEHEGDTPE_					0	0	0		nc|ENSG00000167528|Q96N77-2|ZNF641;nc|ENSG00000167528|Q96N77-3|ZNF641;ENSG00000167528|ENST00000547026|ZNF641;nc|ENSG00000167528|Q96N77|ZNF641	nc|ENSG00000167528|Q96N77-2|ZNF641	nc|ENSG00000167528|Q96N77-2|ZNF641	MULTI-MSMS	HCT116MG_D190212_S2	2	391.4830017089844	3	391.48279	1171.42654	0.035091	1.3738E-05	0.8206	0.00032125	0.85569	0.00033499	391.4830869397595	25.69	0.31113	25.321	25.187	25.498	-0.36914					12	5	3	0	0	0	0.73536	1	9284	9284		7.0371	2.9205	1	19331000			6056	4929	3207	3238	5915	5915					-0.15231612393858995
DGSVGPVGPA	10	Unmodified	_DGSVGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	855.4218139648438	1	855.420673	854.413397	0.77645	0.00066419	-0.4496	-0.00038459	0.32685	0.0002796	855.4205816377511	30.189	0.41975	29.939	29.65	30.069	-0.24946					12	7	2	0	0	0	0.029196	1	11007	11007		103.75	31.826	1	4924900			6057	4715	3208	3239	5916	5916					-0.019633539246569853
DGSVGPVGPA	10	Unmodified	_DGSVGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	855.4203491210938	1	855.420673	854.413397	0.66564	0.0005694	-0.58686	-0.00050201	0.078774	6.7385E-05	855.4203289591105	30.188	0.30217	29.831	29.701	30.003	-0.3571					9	5	2	0	0	0	0.0098116	1	10943	10943		149.99	61.041	1	4029800			6058	4715	3208	3239	5917	5917					-0.019633539246569853
DGVLDDLSP	9	Unmodified	_DGVLDDLSP_					0	0	0		ENST00000334530.9_2_8:21998171-21999053:-|nuORF	ENST00000334530.9_2_8:21998171-21999053:-|nuORF	ENST00000334530.9_2_8:21998171-21999053:-|nuORF	MSMS	HCT116MG_D190212_S3	3	465.72503662109375	2	465.724372	929.434192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.138	1	31.859	31.359	32.359	-0.27841								0	0	0	0.74436	1	11768	11768		16.942	0	1				6059	7182	3209	3240	5918	5918					-0.0333480833566
DHALLQLQY	9	Unmodified	_DHALLQLQY_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	HCT116MG_D190212_S1	1	550.7901611328125	2	550.790381	1099.56621	0.4979	0.00027424	-0.20521	-0.00011303	0.29269	0.00016121	550.7902444137818	33.826	0.2612	33.826	33.711	33.972	0					9	4	3	0	0	0	0.32978	1	12568	12568		27.629	6.0386	1	5467200	+		6060	10335	3210	3241	5919	5919					0.020408414719668144
DHDVVPEDK	9	Unmodified	_DHDVVPEDK_					0	0	0		ENSG00000160224|ENST00000291582|AIRE	ENSG00000160224|ENST00000291582|AIRE	ENSG00000160224|ENST00000291582|AIRE	MSMS	HCT116MG_D190212_S4	4	527.2456665039062	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.099	1	29.742	29.242	30.242	-0.3571								0	0	0	0.62451	1	10897	10897		22.736	2.2827	1				6061	4438	3211	3242	5920	5920					-0.046686185583666884
DHGDDSSDEE	10	Unmodified	_DHGDDSSDEE_					0	0	0		ENST00000394998.5_1_16:31044619-31045584:+|nuORF;ENST00000493902.5_1_16:31044585-31047064:+|nuORF	ENST00000394998.5_1_16:31044619-31045584:+|nuORF	ENST00000394998.5_1_16:31044619-31045584:+|nuORF	MSMS	HCT116MG_D190212_S4	4	369.12164306640625	3	369.123262	1104.34796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.014	1	13.852	13.352	14.352	-0.16229								0	0	0	0.97045	1	4420	4420		0.15932	0.15932	1				6062	7641	3212	3243	5921	5921					-0.20004464698990887
DHGYSLVNR	9	Unmodified	_DHGYSLVNR_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	HCT116MG_D190212_S3	3	354.17572021484375	3	354.177195	1059.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.103	1	27.912	27.412	28.412	-0.19108								0	0	0	0.76948	1	10156	10156		2.7352	1.0826	1				6063	1394	3213	3244	5922	5922					-0.017617863647274135
DHIYTAAGAS	10	Unmodified	_DHIYTAAGAS_					0	0	0		CELSR2-KIAA1324|1|fusion;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;ENST00000369936.2_1_1:109730792-109745631:+|nuORF;ENST00000369938.5_1_1:109730226-109745631:+|nuORF;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1;ENST00000490758.6_1_1:109716345-109734117:+|nuORF	CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-MSMS	HCT116MG_D190212_S3	3	503.23541259765625	2	503.235439	1004.45632	0.40796	0.0002053	-0.442	-0.00022243	-0.034046	-1.7133E-05	503.2350725136924	27.923	0.46879	27.734	27.569	28.038	-0.18847					11	8	2	0	0	0	0.37629	1	10094	10094		43.858	0	1	5680400			6064	397	3214	3245	5923	5923					-0.04572583867252433
DHNDGTSE	8	Unmodified	_DHNDGTSE_					0	0	0			REV__nc|ENSG00000165219|Q14C86-5|GAPVD1	REV__nc|ENSG00000165219|Q14C86-5|GAPVD1	MSMS	HCT116MG_D190212_S4	4	437.6615295410156	2	437.662303	873.310054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.568	1	12.399	11.899	12.899	-0.16903								0	0	0	0.8837	1	3909	3909		0.69038	0	1		+		6065	17194	3215	3246	5924	5924					-0.13166886103124398
DHSQNNWLKTN	11	Unmodified	_DHSQNNWLKTN_					0	0	0		EPHA3|p.R83K|1|0.28|ENSG00000044524|chr3:89209954-89209954|G/A|missense_variant	EPHA3|p.R83K|1|0.28|ENSG00000044524|chr3:89209954-89209954|G/A|missense_variant	EPHA3|p.R83K|1|0.28|ENSG00000044524|chr3:89209954-89209954|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	452.8810729980469	3	452.881219	1355.62183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7605	1	8.5398	8.0398	9.0398	-0.22071								0	0	0	0.9619	1	2678	2678		0.094841	0	1				6066	9137	3216	3247	5925	5925					-0.041759770783983186
DHVKMHQEY	9	Unmodified	_DHVKMHQEY_					0	0	0		FUT9|p.R343M|1|0.07|ENSG00000172461|chr6:96204183-96204183|G/T|missense_variant	FUT9|p.R343M|1|0.07|ENSG00000172461|chr6:96204183-96204183|G/T|missense_variant	FUT9|p.R343M|1|0.07|ENSG00000172461|chr6:96204183-96204183|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	593.768310546875	2	593.769123	1185.52369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.094	1	36.979	36.479	37.479	-0.11478								0	0	0	0.76862	1	13893	13893		5.7319	0	1				6067	9172	3217	3248	5926	5926					-0.06164876927937257
DIAGLLYG	8	Unmodified	_DIAGLLYG_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2	MSMS	HCT116MG_D190212_S4	4	411.22332763671875	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.21	1	35.824	35.324	36.324	-0.38558								0	0	0	0.8837	1	13242	13242		10.183	3.8293	1		+		6068	12987	3218	3249	5927	5927					0.01567022086101133
DIAGVADV	8	Unmodified	_DIAGVADV_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	HCT116MG_D190212_S2	2	759.3894653320312	1	759.38831	758.381034	1.4557	0.0011054	-0.73602	-0.00055893	0.71963	0.00054648	759.3876820339046	46.711	0.2575	46.6	46.471	46.729	-0.11121					8	4	2	0	0	0	0.3916	1	17801	17801		50.855	10.898	1	35479000			6069	3518	3219	3250	5928	5928					-0.007821413276701605
DIDECSDGFV	10	Unmodified	_DIDECSDGFV_					0	0	0		nc|ENSG00000184613|Q99435-2|NELL2;ENST00000549668.1_1_12:44926343-45059345:-|nuORF;NELL2|p.C688Afs*90|1|0.39|ENSG00000184613|chr12:44522113-44522113|A/-|frameshift_variant;nc|ENSG00000184613|Q99435-4|NELL2;ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-3|NELL2	nc|ENSG00000184613|Q99435-2|NELL2	nc|ENSG00000184613|Q99435-2|NELL2	MSMS	HCT116MG_D190212_S3	3	550.2174682617188	2	550.216054	1098.41756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.138	1	43.831	43.331	44.331	-0.30759								0	0	0	0.95351	1	16491	16491		3.9444	1.3669	1				6070	9579	3220	3251	5929	5929					-0.12771677283922145
DIDLDALAA	9	Unmodified	_DIDLDALAA_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant;EIF5B|p.K748Nfs*29|1|0.22|ENSG00000158417|chr2:99382889-99382889|A/-|frameshift_variant	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	HCT116MG_D190212_S2	2	916.4633178710938	1	916.462204	915.454927	0.90193	0.00082658	-0.40394	-0.0003702	0.49799	0.00045639	916.4622777925075	47.521	0.30988	47.399	47.233	47.543	-0.12175					8	5	2	0	0	0	0.071351	1	18152	18152		64.236	0	1	10034000			6071	770	3221	3252	5930	5930					-0.006182179560028089
DIDLDALAA	9	Unmodified	_DIDLDALAA_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant;EIF5B|p.K748Nfs*29|1|0.22|ENSG00000158417|chr2:99382889-99382889|A/-|frameshift_variant	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	HCT116MG_D190212_S3	3	916.46240234375	1	916.462204	915.454927	0.50123	0.00045936	-0.22289	-0.00020427	0.27834	0.00025509	916.4616701707686	47.7	0.31131	47.385	47.256	47.567	-0.31525					8	5	2	0	0	0	0.071351	1	17947	17947		64.236	0	1	6809800			6072	770	3221	3252	5931	5931					-0.006182179560028089
DIFDRNAE	8	Unmodified	_DIFDRNAE_					0	0	0			REV__ENST00000256257.1_1_8:33424221-33424608:-|nuORF	REV__ENST00000256257.1_1_8:33424221-33424608:-|nuORF	MSMS	HCT116MG_D190212_S4	4	489.7498779296875	2	490.227613	978.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.207	1	33.821	33.321	34.321	-0.38558								0	0	0	0.8837	1	12481	12481		11.64	0.81637	1		+		6073	14610	3222	3253	5932	5932					-0.04940870384291429
DIFNGYKRFL	10	Unmodified	_DIFNGYKRFL_					0	0	0			REV__ENSG00000105793|ENST00000222511|GTPBP10	REV__ENSG00000105793|ENST00000222511|GTPBP10	MSMS	HCT116MG_D190212_S2	2	424.896728515625	3	424.896029	1271.66626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.314	1	14.002	13.502	14.502	-0.31202								0	0	0	0.95511	1	4677	4677		3.5871	0	1		+		6074	11275	3223	3254	5933	5933					0.04129078805772224
DIGDQVME	8	Unmodified	_DIGDQVME_					0	0	0			REV__ENST00000498084.5_1_20:34257546-34261984:-|nuORF	REV__ENST00000498084.5_1_20:34257546-34261984:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	907.2407836914062	1	906.387324	905.380048	0.76132	0.00069005	0.36505	0.00033087	1.1264	0.0010209	906.3877005863911	31.821	0.26089	31.821	31.7	31.961	0					6	4	2	0	0	0	0.41924	1	11691	11691		48.346	2.3249	1	7748400	+		6075	14368	3224	3255	5934	5934					-0.07642723758863212
DIGHHIHYYYR	11	Unmodified	_DIGHHIHYYYR_					0	0	0			REV__DNAH7|p.Y167H|1|0.16|ENSG00000118997|chr2:196026928-196026928|A/G|missense_variant	REV__DNAH7|p.Y167H|1|0.16|ENSG00000118997|chr2:196026928-196026928|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	737.35791015625	2	737.354742	1472.69493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.907	1	21.907	21.407	22.407	0.00074577								0	0	0	0.95196	1	7658	7658		5.2969	0.39987	1		+		6076	10386	3225	3256	5935	5935					-0.022508035651071623
DIGPNQAPGSP	11	Unmodified	_DIGPNQAPGSP_					0	0	0			REV__nc|ENSG00000166454|O43313-2|ATMIN	REV__nc|ENSG00000166454|O43313-2|ATMIN	MULTI-SECPEP	HCT116MG_D190212_S3	3	527.2115478515625	2	526.753995	1051.49344	0.50244	0.00026466	-0.76578	-0.00040338	-0.26334	-0.00013871	526.7533448429444	25.596	0.20799	25.468	25.338	25.546	-0.12795					5	3	2	0	0	0	0.3506	1	9174	9174		11.495	2.7493	1	3517500	+		6077	13108	3226	3257	5936	5936					-0.030249123214616702
DIGSESTEDQ	10	Unmodified	_DIGSESTEDQ_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MSMS	HCT116MG_D190212_S1	1	540.7196044921875	2	540.720015	1079.42548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.016	1	20.016	19.516	20.516	0								0	0	0	0.049024	1	6973	6973		103.42	51.151	1			+	6078	548	3227	3258	5937	5937					-0.11105826762809556
DIGSESTEDQ	10	Unmodified	_DIGSESTEDQ_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S2	2	540.7203369140625	2	540.720015	1079.42548	0.39075	0.00021129	-0.1968	-0.00010641	0.19396	0.00010488	540.7199256456053	20.191	0.31251	19.814	19.659	19.972	-0.37716					11	5	3	0	0	0	0.029154	1	7061	7061		103.82	38.589	1	10650000		+	6079	548	3227	3258	5938	5938					-0.11105826762809556
DIGSESTEDQ	10	Unmodified	_DIGSESTEDQ_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S3	3	540.7198486328125	2	540.720015	1079.42548	0.40175	0.00021724	-0.15106	-8.1683E-05	0.25069	0.00013555	540.7198291914508	20.027	0.52081	20.075	19.843	20.363	0.048109					23	9	4	0	0	0	0.01091	1	6886	6886		143.91	83.835	1	23745000		+	6080	548	3227	3258	5939	5939					-0.11105826762809556
DIGSESTEDQ	10	Unmodified	_DIGSESTEDQ_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S3	3	1080.4334716796875	1	1080.43275	1079.42548	0.35086	0.00037908	-0.17583	-0.00018998	0.17503	0.00018911	1080.4325378546712	19.996	0.31253	20.044	19.895	20.207	0.048109					9	5	2	0	0	0	0.0087358	1	6895	6895		155.95	89.497	1	4930100		+	6081	548	3227	3258	5940	5940					-0.11105826762809556
DIGSESTEDQ	10	Unmodified	_DIGSESTEDQ_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MSMS	HCT116MG_D190212_S3	3	540.7198486328125	2	540.720015	1079.42548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.319	1	19.379	18.879	19.879	0.05983								0	0	0	0.88261	1	6617	6617		18.146	8.0724	1			+	6082	548	3227	3258	5941	5941					-0.11105826762809556
DIGSESTEDQ	10	Unmodified	_DIGSESTEDQ_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S4	4	540.7199096679688	2	540.720015	1079.42548	0.4174	0.0002257	0.041932	2.2673E-05	0.45933	0.00024837	540.7199134193077	19.329	0.51994	19.142	18.869	19.389	-0.18674					14	9	2	0	0	0	0.51145	1	6531	6531		34.402	19.563	1	2381800		+	6083	548	3227	3258	5942	5942					-0.11105826762809556
DIGSESTEDQ	10	Unmodified	_DIGSESTEDQ_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S4	4	540.720458984375	2	540.720015	1079.42548	0.45551	0.0002463	0.15568	8.4182E-05	0.61119	0.00033048	540.7199057767007	20.147	0.41573	19.948	19.783	20.199	-0.19881					10	7	2	0	0	0	0.019418	2	6889	6853;6889		121.53	83.359	1	3827700		+	6084	548	3227	3258	5943;5944	5944					-0.11105826762809556
DIGSESTEDQ	10	Unmodified	_DIGSESTEDQ_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MATCH	HCT116MG_D190212_S1	1		2	540.720015	1079.42548	0.38671	0.0002091	-0.10343	-5.5929E-05	0.28327	0.00015317	540.7202242296565	19.239	0.26016	19.239	19.131	19.391	0	0.048477	-0.00013813	NaN	34.402	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939230		+	6085	548	3227	3258							-0.11105826762809556
DIIKADLDKQ	10	Unmodified	_DIIKADLDKQ_					0	0	0			REV__TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant	REV__TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	579.8225708007812	2	579.821878	1157.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.071	1	20.071	19.571	20.571	0								0	0	0	0.93967	1	6995	6995		11.495	4.7715	1		+		6086	10601	3228	3259	5945	5945					0.05669362469302541
DIIKKFVSVP	10	Unmodified	_DIIKKFVSVP_					0	0	0		HEATR5B|p.A1326V|1|0.04|ENSG00000008869|chr2:37020713-37020713|G/A|missense_variant	HEATR5B|p.A1326V|1|0.04|ENSG00000008869|chr2:37020713-37020713|G/A|missense_variant	HEATR5B|p.A1326V|1|0.04|ENSG00000008869|chr2:37020713-37020713|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	573.7550659179688	2	573.350074	1144.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.355	1	46.985	46.485	47.485	-0.37038								0	0	0	0.94107	1	17514	17514		6.7232	2.7788	1				6087	9211	3229	3260	5946	5946					0.11904035096654297
DIKASISLNLP	11	Unmodified	_DIKASISLNLP_					0	0	0		nc|ENSG00000186335|Q495M3-3|SLC36A2;nc|ENSG00000186335|Q495M3-2|SLC36A2;ENSG00000186335|ENST00000335244|SLC36A2	nc|ENSG00000186335|Q495M3-3|SLC36A2	nc|ENSG00000186335|Q495M3-3|SLC36A2	MULTI-MSMS	HCT116MG_D190212_S1	1	585.8399047851562	2	585.840071	1169.66559	0.56221	0.00032936	-0.25033	-0.00014665	0.31188	0.00018271	585.8397549958806	45.196	0.26116	45.196	44.983	45.244	0					7	4	2	0	0	0	0.53802	1	17122	17122		42.312	9.4147	1	8480900			6088	5879	3230	3261	5947	5947					0.08754239366044203
DIKEDNGM	8	Unmodified	_DIKEDNGM_					0	0	0		tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	tr|U7SXB5|U7SXB5_FUSNUDihydroorotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrCPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	461.2035217285156	2	461.20275	920.390947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.202	1	57.202	56.702	57.702	0								0	0	0	0.8837	1	22007	22007		5.7604	0.52976	1				6089	18510	3231	3262	5948	5948					-0.07243321384589763
DIKFSPLSFQ	10	Unmodified	_DIKFSPLSFQ_					0	0	0			REV__nc|ENSG00000102858|O60291-4|MGRN1	REV__nc|ENSG00000102858|O60291-4|MGRN1	MSMS	HCT116MG_D190212_S1	1	591.3112182617188	2	591.313689	1180.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.254	1	31.254	30.754	31.754	0								0	0	0	0.87399	1	11493	11493		19.257	4.4187	1		+		6090	11164	3232	3263	5949	5949					0.029742813032271442
DIKKHLLVH	9	Unmodified	_DIKKHLLVH_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MSMS	HCT116MG_D190212_S2	2	368.2292175292969	3	368.229231	1101.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.368	1	21.983	21.483	22.483	-0.3852								0	0	0	0.7694	1	7920	7920		2.9952	0	1				6091	3145	3233	3264	5950	5950					0.11909703876563071
DIKLWRKLL	9	Unmodified	_DIKLWRKLL_					0	0	0		ENSG00000104549|ENST00000265896|SQLE;SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant;ENST00000518604.1_1_8:126030245-126031031:+|nuORF	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MSMS	HCT116MG_D190212_S2	2	592.880126953125	2	592.879333	1183.74411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.439	1	37.336	36.836	37.836	-0.10318								0	0	0	0.76913	1	14033	14033		3.9444	0.3479	1				6092	1940	3234	3265	5951	5951					0.15959136461810886
DIKRDPKHE	9	Unmodified	_DIKRDPKHE_					0	0	0		ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	MSMS	HCT116MG_D190212_S2	2	379.8707580566406	3	379.871883	1136.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.067	1	37.974	37.474	38.474	-0.09301								0	0	0	0.67173	1	14290	14290		14.405	2.1647	1				6093	6213	3235	3266	5952	5952					0.030987447321649597
DIKRFKRLEKE	11	Unmodified	_DIKRFKRLEKE_					0	0	0			REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	REV__ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MSMS	HCT116MG_D190212_S4	4	731.4302368164062	2	731.43045	1460.84635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.975	1	27.653	27.153	28.153	-0.32157								0	0	0	0.95273	1	10039	10039		4.897	0.36815	1		+		6094	11540	3236	3267	5953	5953					0.13435757742718124
DILLIITILLY	11	Unmodified	_DILLIITILLY_					0	0	0		tr|U7SSW9|U7SSW9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01529PE=4SV=1	tr|U7SSW9|U7SSW9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01529PE=4SV=1	tr|U7SSW9|U7SSW9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01529PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	651.9152221679688	2	651.91779	1301.82103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.271	1	41.203	40.703	41.703	-0.068199								0	0	0	0.95581	1	15589	15589		3.2813	0.54611	1				6095	18424	3237	3268	5954	5954					0.1821889016764544
DILPWRQED	9	Unmodified	_DILPWRQED_					0	0	0		nc|ENSG00000122188|Q8IWV1-2|LAX1;nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	MSMS	HCT116MG_D190212_S4	4	391.196044921875	3	391.196256	1170.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.773	1	58.49	57.99	58.99	-0.28305								0	0	0	0.76995	1	22099	22099		1.0715	0	1				6096	2752	3238	3269	5955	5955					-0.011523638790094992
DILQQIMTIT	10	Unmodified	_DILQQIMTIT_					0	0	0		nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;PBX1|p.T88Qfs*3|1|0.42|ENSG00000185630|chr1:164563303-164563303|A/-|frameshift_variant;PBX2|p.S151Gfs*4|1|0.19|ENSG00000204304|chr6:32188349-32188350|-/ATCC|frameshift_variant	nc|ENSG00000185630|P40424-2|PBX1	nc|ENSG00000185630|P40424-2|PBX1	MSMS	HCT116MG_D190212_S4	4	588.322998046875	2	588.320657	1174.62676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.147	1	47.779	47.279	48.279	-0.36816								0	0	0	0.95507	1	17822	17822		3.5965	0.31518	1				6097	5839	3239	3270	5956	5956					0.04643190740034697
DILVVINVSPL	11	Unmodified	_DILVVINVSPL_					0	0	0		ENSG00000183208|ENST00000329600|GDPGP1	ENSG00000183208|ENST00000329600|GDPGP1	ENSG00000183208|ENST00000329600|GDPGP1	MSMS	HCT116MG_D190212_S1	1	591.3590087890625	2	591.360639	1180.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.575	1	40.575	40.075	41.075	0								0	0	0	0.95196	1	15254	15254		5.2969	1.3525	1				6098	5706	3240	3271	5957	5957					0.12360000405533356
DIMAKIKDKRY	11	Unmodified	_DIMAKIKDKRY_					0	0	0			REV__tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	REV__tr|U7T6K0|U7T6K0_FUSNUMotA/TolQ/ExbBprotonchanneldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00269PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	690.8862915039062	2	690.887029	1379.75951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.42	1	47.299	46.799	47.799	-0.12175								0	0	0	0.94416	1	18089	18089		9.3831	0.63772	1		+		6099	17998	3241	3272	5958	5958					0.08481635196676507
DIMDLYEKF	9	Unmodified	_DIMDLYEKF_					0	0	0		tr|U7T249|U7T249_FUSNUDUF4878domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00547PE=4SV=1	tr|U7T249|U7T249_FUSNUDUF4878domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00547PE=4SV=1	tr|U7T249|U7T249_FUSNUDUF4878domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00547PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	586.7771606445312	2	587.278457	1172.54236	0.46329	0.00027208	0.367	0.00021553	0.83028	0.00048761	587.2786895577622	43.961	0.20409	43.961	43.884	44.088	0					5	3	2	0	0	0	0.22899	1	16647	16647		18.146	2.2992	1	12086000			6100	18564	3242	3273	5959	5959					-0.03700760076753795
DIMRQTLEL	9	Unmodified	_DIMRQTLEL_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENST00000533705.5_1_9:86284090-86294929:-|nuORF	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	559.7977294921875	2	559.797349	1117.58014	0.88004	0.00049264	-0.6121	-0.00034265	0.26794	0.00014999	559.797098344407	46.751	0.2575	46.639	46.471	46.729	-0.11121					7	4	2	0	0	0	0.31596	1	17849	17849		29.082	0	1	16614000			6101	3322	3243	3274	5960	5960					0.02605750908742266
DINEKDISGPS	11	Unmodified	_DINEKDISGPS_					0	0	0		APIP|p.T203Hfs*22|1|0.4|ENSG00000149089|chr11:34883359-34883359|T/-|frameshift_variant;nc|ENSG00000149089|Q96GX9-3|APIP;ENSG00000149089|ENST00000395787|APIP	APIP|p.T203Hfs*22|1|0.4|ENSG00000149089|chr11:34883359-34883359|T/-|frameshift_variant	APIP|p.T203Hfs*22|1|0.4|ENSG00000149089|chr11:34883359-34883359|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	588.239501953125	2	587.78295	1173.55135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.934	1	22.915	22.415	23.415	-0.018869								0	0	0	0.90489	1	8072	8072		19.362	3.2128	1				6102	158	3244	3275	5961	5961					-0.02848695186708028
DINFNVRFET	10	Unmodified	_DINFNVRFET_					0	0	0		UTP20|p.D1447N|1|0.31|ENSG00000120800|chr12:101342983-101342983|G/A|missense_variant	UTP20|p.D1447N|1|0.31|ENSG00000120800|chr12:101342983-101342983|G/A|missense_variant	UTP20|p.D1447N|1|0.31|ENSG00000120800|chr12:101342983-101342983|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	419.2323303222656	3	418.875293	1253.60405	0.021146	8.8576E-06	2.1662	0.00090736	2.1873	0.00091622	418.87637175089765	23.605	0.36466	23.221	23.143	23.508	-0.38324					9	6	2	0	0	0	0.30526	1	8452	8452		3.3196	1.7274	1	7618700			6103	18688	3245	3276	5962	5962					-0.01260692333244151
DINHQLLLI	9	Unmodified	_DINHQLLLI_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	MSMS	HCT116MG_D190212_S2	2	360.52947998046875	3	360.213358	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.878	1	31.629	31.129	32.129	-0.24883								0	0	0	0.76777	1	11776	11776		8.7454	0.58988	1		+		6104	12114	3246	3277	5963	5963					0.08254004885725408
DINKIIIRQ	9	Unmodified	_DINKIIIRQ_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S2	2	371.56414794921875	3	371.564391	1111.67134	-0.19693	-7.3171E-05	0.0022039	8.1891E-07	-0.19472	-7.2352E-05	371.5643341909029	45.888	0.25658	45.787	45.658	45.915	-0.1014					7	4	2	0	0	0	0.22528	1	17497	17497		38.615	9.1776	1	16715000			6105	5321	3247	3278	5964	5964					0.11997382668369028
DINLILALS	9	Unmodified	_DINLILALS_					0	0	0		ENST00000502604.5_2_5:68550491-68551353:+|nuORF	ENST00000502604.5_2_5:68550491-68551353:+|nuORF	ENST00000502604.5_2_5:68550491-68551353:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	486.29241943359375	2	486.292225	970.569897	0.24506	0.00011917	0.61144	0.00029734	0.85649	0.00041651	486.29212443674334	55.989	0.31343	55.701	55.571	55.884	-0.28773					8	5	2	0	0	0	0.34272	1	21269	21269		26.268	2.2476	1	3048800			6106	8429	3248	3279	5965	5965					0.08343511245789159
DINPGDTVL	9	Unmodified	_DINPGDTVL_					0	0	0		ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	MSMS	HCT116MG_D190212_S3	3	472.2394104003906	2	472.24019	942.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.659	1	39.358	38.858	39.858	-0.30137								0	0	0	0.59795	1	14726	14726		24.021	2.2739	1				6107	5175	3249	3280	5966	5966					-0.007708155817113038
DIPDLAEKLQ	10	Unmodified	_DIPDLAEKLQ_					0	0	0			REV__ZNF239|p.S146A|1|0.12|ENSG00000196793|chr10:43557644-43557644|A/C|missense_variant	REV__ZNF239|p.S146A|1|0.12|ENSG00000196793|chr10:43557644-43557644|A/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	571.3079223632812	2	571.308603	1140.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.289	1	40.911	40.411	41.411	-0.37732								0	0	0	0.94698	1	15179	15179		9.3831	5.4387	1		+		6108	18074	3250	3281	5967	5967					0.037976735779921
DIPNKILLA	9	Unmodified	_DIPNKILLA_					0	0	0			REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-MSMS	HCT116MG_D190212_S2	2	498.80804443359375	2	498.808042	995.601532	0.51363	0.0002562	-0.65168	-0.00032506	-0.13804	-6.8858E-05	498.807787185795	47.329	0.25801	47.207	47.078	47.336	-0.12175					6	4	2	0	0	0	0.097615	1	18079	18079		58.679	14.821	1	9985800	+		6109	14358	3251	3282	5968	5968					0.1035550399975591
DIPSTHNAV	9	Unmodified	_DIPSTHNAV_					0	0	0			REV__ENST00000513683.1_1_4:84509414-84516114:+|nuORF	REV__ENST00000513683.1_1_4:84509414-84516114:+|nuORF	MSMS	HCT116MG_D190212_S2	2	477.23779296875	2	477.237981	952.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.067	1	29.782	29.282	30.282	-0.28453								0	0	0	0.64498	1	11039	11039		21.747	3.6117	1		+		6110	12237	3252	3283	5969	5969					-0.016722800046181874
DIQNLSVGLP	10	Unmodified	_DIQNLSVGLP_					0	0	0		ENSG00000008086|ENST00000623535|CDKL5;nc|ENSG00000008086|O76039-1|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	ENSG00000008086|ENST00000623535|CDKL5	MULTI-MSMS	HCT116MG_D190212_S3	3	528.2883911132812	2	528.290214	1054.56587	0.58593	0.00030954	-2.9409	-0.0015536	-2.3549	-0.0012441	528.2884793534986	46.661	0.20839	46.347	46.229	46.437	-0.31405					5	3	2	0	0	0	0.77749	1	17535	17535		13.906	0.86358	1	2775300			6111	858	3253	3284	5970	5970					0.04077421752117516
DIQPDHSAAQP	11	Unmodified	_DIQPDHSAAQP_					0	0	0		ENST00000412391.6_2_19:36235431-36236062:-|nuORF	ENST00000412391.6_2_19:36235431-36236062:-|nuORF	ENST00000412391.6_2_19:36235431-36236062:-|nuORF	MSMS	HCT116MG_D190212_S4	4	589.8117065429688	2	589.775459	1177.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.873	1	21.655	21.155	22.155	-0.21832								0	0	0	0.89672	1	7577	7577		20.415	1.0526	1				6112	7735	3254	3285	5971	5971					-0.045301422640704914
DIQQGISKY	9	Unmodified	_DIQQGISKY_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	HCT116MG_D190212_S3	3	527.6997680664062	2	526.274564	1050.53457	0.53787	0.00028307	0.34465	0.00018138	0.88252	0.00046445	526.2745689845112	48.378	0.36451	48.062	47.879	48.244	-0.31596					15	6	4	0	0	0	0.60612	1	18148	18148		10.824	1.4765	1	23212000			6113	4847	3255	3286	5972	5972					0.011328487180207958
DIQTKYRNKVD	11	Unmodified	_DIQTKYRNKVD_					0	0	0			REV__TMF1|p.M1079R|1|0.2|ENSG00000144747|chr3:69023223-69023223|A/C|missense_variant	REV__TMF1|p.M1079R|1|0.2|ENSG00000144747|chr3:69023223-69023223|A/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	690.3672485351562	2	690.367515	1378.72048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.927	1	39.854	39.354	40.354	-0.072838								0	0	0	0.94012	1	15043	15043		11.495	3.3392	1		+		6114	17648	3256	3287	5973	5973					0.046266261666460196
DISHSPWY	8	Unmodified	_DISHSPWY_					0	0	0			REV__tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	REV__tr|U7T8N3|U7T8N3_FUSNUVirulence-associatedproteinE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00110PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	502.7762145996094	2	502.727249	1003.43995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.219	1	39.141	38.641	39.641	-0.077835								0	0	0	0.8837	1	14754	14754		13.508	2.3934	1		+		6115	18010	3257	3288	5974	5974					-0.06163665033329835
DISLDKFTI	9	Unmodified	_DISLDKFTI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.8086547851562	2	526.28714	1050.55973	0.55381	0.00029146	-0.93136	-0.00049017	-0.37755	-0.0001987	526.2864180884611	41.695	0.31017	41.627	41.498	41.808	-0.068199					8	5	2	0	0	0	0.19551	1	15803	15803		26.884	0	1	9121700	+		6116	12706	3258	3289	5975	5975					0.036469035205982436
DISLIHDGP	9	Unmodified	_DISLIHDGP_					0	0	0			REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	483.7481689453125	2	483.748182	965.481811	0.29441	0.00014242	0.016593	8.0269E-06	0.311	0.00015045	483.74805560523004	26.567	0.4686	26.418	26.046	26.515	-0.14924					10	8	2	0	0	0	0.57626	1	9526	9526		12.532	0.89125	1	10108000	+		6117	12422	3259	3290	5976	5976					-0.0023110934480428114
DISWHIKRKI	10	Unmodified	_DISWHIKRKI_					0	0	0		ENST00000358015.7_1_9:110093006-110093297:+|nuORF	ENST00000358015.7_1_9:110093006-110093297:+|nuORF	ENST00000358015.7_1_9:110093006-110093297:+|nuORF	MSMS	HCT116MG_D190212_S3	3	648.3817749023438	2	648.382771	1294.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.202	1	42.897	42.397	43.397	-0.30472								0	0	0	0.95351	1	16114	16114		3.9444	0.3479	1				6118	7315	3260	3291	5977	5977					0.11540449342351167
DITIVRHLQY	10	Unmodified	_DITIVRHLQY_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MSMS	HCT116MG_D190212_S1	1	629.3489379882812	2	629.351137	1256.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.004	1	33.004	32.504	33.504	0								0	0	0	0.94107	1	12199	12199		6.7232	0.51738	1				6119	2323	3261	3292	5978	5978					0.06964463834469825
DITKEILYV	9	Unmodified	_DITKEILYV_					0	0	0		tr|U7SN97|U7SN97_FUSNUMolybdopterin-guaninedinucleotidebiosynthesisproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01866PE=4SV=1	tr|U7SN97|U7SN97_FUSNUMolybdopterin-guaninedinucleotidebiosynthesisproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01866PE=4SV=1	tr|U7SN97|U7SN97_FUSNUMolybdopterin-guaninedinucleotidebiosynthesisproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01866PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	547.3216552734375	2	547.310615	1092.60668	0.34308	0.00018777	-1.8964	-0.0010379	-1.5533	-0.00085013	547.3107158885432	48.514	0.25736	48.514	48.357	48.614	0					11	4	3	0	0	0	0.1898	1	18434	18434		38.176	7.539	1	33510000			6120	18359	3262	3293	5979	5979					0.0640776307170654
DITKKMFCR	9	Unmodified	_DITKKMFCR_					0	0	0			REV__ENSG00000112619|ENST00000230381|PRPH2	REV__ENSG00000112619|ENST00000230381|PRPH2	MSMS	HCT116MG_D190212_S4	4	571.2968139648438	2	571.296462	1140.57837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.502	1	47.132	46.632	47.632	-0.37038								0	0	0	0.76913	1	17569	17569		3.9444	0	1		+		6121	11464	3263	3294	5980	5980					0.013704186191262124
DITSEKRKL	9	Unmodified	_DITSEKRKL_					0	0	0			REV__ENST00000432045.6_1_7:130597827-130598010:-|nuORF	REV__ENST00000432045.6_1_7:130597827-130598010:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	545.8185424804688	2	545.316763	1088.61897	0.36269	0.00019778	0.2676	0.00014593	0.63029	0.00034371	545.3167109902226	48.895	2.3687	48.53	47.782	50.151	-0.365					128	56	4	0	0	0	0.71898	1	18738	18738		3.9444	3.9444	1	17010000	+		6122	15586	3264	3295	5981	5981					0.07820799534761136
DIVGCHIDPDF	11	Unmodified	_DIVGCHIDPDF_					0	0	0			REV__ENST00000472569.1_1_3:63968607-63974001:+|nuORF	REV__ENST00000472569.1_1_3:63968607-63974001:+|nuORF	MSMS	HCT116MG_D190212_S1	1	615.7774047851562	2	615.776613	1229.53867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.146	1	26.146	25.646	26.646	0								0	0	0	0.94416	1	9435	9435		9.3831	2.66	1		+		6123	12940	3265	3296	5982	5982					-0.06691429850593522
DIVMKKAI	8	Unmodified	_DIVMKKAI_					0	0	0		tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	459.2796936035156	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.203	1	39.203	38.703	39.703	0								0	0	0	0.8837	1	14700	14700		5.2307	0	1				6124	18556	3266	3297	5983	5983					0.07996490064874706
DIVMKKAI	8	Unmodified	_DIVMKKAI_					0	0	0		tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	tr|U7T185|U7T185_FUSNUTriggerfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tigPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	459.2800598144531	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.334	1	38.954	38.454	39.454	-0.38055								0	0	0	0.8837	1	14449	14449		14.582	5.2343	1				6125	18556	3266	3297	5984	5984					0.07996490064874706
DIVTVDDIDPV	11	Unmodified	_DIVTVDDIDPV_					0	0	0			REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	600.3005981445312	2	600.803351	1199.59215	0.38847	0.0002334	-1.3795	-0.00082883	-0.99106	-0.00059543	600.8023374289869	42.874	0.26104	42.874	42.69	42.951	0					8	4	2	0	0	0	0.33676	1	16191	16191		22.736	4.5899	1	15135000	+		6126	13209	3267	3298	5985	5985					0.0003364613287430984
DIVTVDDIDPV	11	Unmodified	_DIVTVDDIDPV_					0	0	0			REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	600.8023071289062	2	600.803351	1199.59215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.215	1	42.84	42.34	43.34	-0.37493								0	0	0	0.8787	1	15889	15889		22.736	4.5899	1		+		6127	13209	3267	3298	5986	5986					0.0003364613287430984
DIVTVQVLP	9	Unmodified	_DIVTVQVLP_					0	0	0		ENST00000498666.5_1_21:46306285-46312915:-|nuORF;ENST00000475170.5_1_21:46306285-46313576:-|nuORF;ENSG00000160255|ENST00000652462|ITGB2	ENST00000498666.5_1_21:46306285-46312915:-|nuORF	ENST00000498666.5_1_21:46306285-46312915:-|nuORF	MSMS	HCT116MG_D190212_S4	4	492.2919006347656	2	492.292225	982.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.618	1	45.245	44.745	45.745	-0.37266								0	0	0	0.52331	1	16834	16834		27.629	1.3607	1				6128	4440	3268	3299	5987	5987					0.07791511245807214
DIVWWAGTI	9	Unmodified	_DIVWWAGTI_					0	0	0		ENST00000560105.1_1_15:23062266-23086303:-|nuORF;ENSG00000170113|ENST00000337435|NIPA1	ENST00000560105.1_1_15:23062266-23086303:-|nuORF	ENST00000560105.1_1_15:23062266-23086303:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.2970581054688	2	530.776742	1059.53893	0.44052	0.00023382	-0.43654	-0.0002317	0.0039807	2.1128E-06	530.776452065738	54.671	0.15389	54.481	54.405	54.559	-0.1894					4	2	2	0	0	0	0.24622	1	21024	21024		7.2892	0	1	18090000			6129	5115	3269	3300	5988	5988					0.011543579315684838
DIWSLGCLP	9	Unmodified	_DIWSLGCLP_					0	0	0		ENST00000438441.1_22:16365437-16366175:+|nuORF	ENST00000438441.1_22:16365437-16366175:+|nuORF	ENST00000438441.1_22:16365437-16366175:+|nuORF	MSMS	HCT116MG_D190212_S4	4	502.247802734375	2	502.249503	1002.48445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.087	1	23.829	23.329	24.329	-0.25816								0	0	0	0.71969	1	8468	8468		18.135	2.2878	1				6130	7899	3270	3301	5989	5989					-0.01668977211500078
DIYAQYEA	8	Unmodified	_DIYAQYEA_					0	0	0			REV__ENSG00000075856|ENST00000546815|SART3	REV__ENSG00000075856|ENST00000546815|SART3	MULTI-SECPEP	HCT116MG_D190212_S1	1	486.79010009765625	2	486.71909	971.423627	0.25051	0.00012193	2.7133	0.0013206	2.9638	0.0014426	486.7210173784122	22.748	0.1563	22.748	22.637	22.793	0					4	2	2	0	0	0	0.29044	1	8079	8079		13.906	0	1	994680	+		6131	10814	3271	3302	5990	5990					-0.06322790990100202
DKADVGRLSP	10	Unmodified	_DKADVGRLSP_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;ENST00000497886.5_1_16:2128976-2136835:+|nuORF;TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	HCT116MG_D190212_S1	1	529.3057250976562	2	529.285463	1056.55637	0.33405	0.00017681	0.16738	8.859E-05	0.50142	0.0002654	529.2853815723381	32.665	0.20872	32.665	32.482	32.691	0					5	3	2	0	0	0	0.8224	1	12009	12009		10.151	0.076642	1	5852100			6132	1880	3272	3303	5991	5991					0.030356534665770596
DKALPRPIR	9	Unmodified	_DKALPRPIR_					0	0	0		TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant	TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	533.3280639648438	2	533.330008	1064.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.016	1	36.631	36.131	37.131	-0.38486								0	0	0	0.76834	1	13568	13568		6.7232	0.51738	1				6133	6129	3273	3304	5992	5992					0.11572533216713055
DKASDPHLGTP	11	Unmodified	_DKASDPHLGTP_					0	0	0		MAP4K2|p.S298Pfs*38|1|0.31|ENSG00000168067|chr11:64800133-64800133|G/-|frameshift_variant;MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant;nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2	MAP4K2|p.S298Pfs*38|1|0.31|ENSG00000168067|chr11:64800133-64800133|G/-|frameshift_variant	MAP4K2|p.S298Pfs*38|1|0.31|ENSG00000168067|chr11:64800133-64800133|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2803955078125	2	569.280377	1136.5462	0.29693	0.00016903	-0.060677	-3.4542E-05	0.23625	0.00013449	569.2802842762784	19.075	0.26068	18.706	18.575	18.836	-0.3695					6	4	2	0	0	0	0.59037	1	6627	6627		36.506	5.2379	1	5576800			6134	4980	3274	3305	5993	5993					-0.01660954258682068
DKDYPLTPP	9	Unmodified	_DKDYPLTPP_					0	0	0		VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant;nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant	VPS13D|p.K3964Nfs*34|1|0.09|ENSG00000048707|chr1:12403831-12403831|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	523.2622680664062	2	523.263665	1044.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.18	1	32.895	32.395	33.395	-0.28511								0	0	0	0.76575	1	12174	12174		15.847	3.3156	1				6135	1036	3275	3306	5994	5994					-0.007699560306036801
DKEAIKKLLQN	11	Unmodified	_DKEAIKKLLQN_					0	0	0			REV__ENST00000498250.1_1_3:37369266-37370614:+|nuORF	REV__ENST00000498250.1_1_3:37369266-37370614:+|nuORF	MSMS	HCT116MG_D190212_S1	1	650.5911865234375	2	650.385177	1298.7558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.338	1	42.338	41.838	42.838	0								0	0	0	0.94269	1	15966	15966		10.151	3.0488	1		+		6136	12427	3276	3307	5995	5995					0.11837288694482595
DKECVEFKY	9	Unmodified	_DKECVEFKY_					0	0	0			REV__ENSG00000178700|ENST00000314636|DHFR2	REV__ENSG00000178700|ENST00000314636|DHFR2	MSMS	HCT116MG_D190212_S2	2	580.7697143554688	2	580.768257	1159.52196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.804	1	20.424	19.924	20.924	-0.3798								0	0	0	0.59795	1	7288	7288		24.021	4.7636	1		+		6137	13610	3277	3308	5996	5996					-0.05141930736544964
DKEEGVSPKP	10	Unmodified	_DKEEGVSPKP_					0	0	0			REV__MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	REV__MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	543.2539672851562	2	543.277303	1084.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.85	1	21.85	21.35	22.35	0.00074577								0	0	0	0.8981	1	7635	7635		16.149	0.30192	1		+		6138	10175	3278	3309	5997	5997					0.001165275098173879
DKEERACLQQD	11	Unmodified	_DKEERACLQQD_					0	0	0		nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;ENST00000492728.1_1_1:146714404-146731617:+|nuORF	nc|ENSG00000131778|Q86WJ1-4|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	MSMS	HCT116MG_D190212_S1	1	667.5418701171875	2	667.803891	1333.59323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.769	1	37.769	37.269	38.269	0								0	0	0	0.94851	1	14121	14121		7.1017	2.5729	1				6139	3156	3279	3310	5998	5998					-0.060224627698517
DKEFQTGKESQ	11	Unmodified	_DKEFQTGKESQ_					0	0	0		MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant;MAP2|p.T1474Nfs*22|1|0.33|ENSG00000078018|chr2:209696942-209696943|-/A|frameshift_variant;nc|ENSG00000078018|P11137-3|MAP2;ENSG00000078018|ENST00000682079|MAP2	MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	648.8071899414062	2	648.806956	1295.59936	0.54157	0.00035138	-0.23416	-0.00015192	0.30741	0.00019945	648.8068002096668	31.403	1.0405	31.133	30.389	31.43	-0.27028					37	19	3	0	0	0	0.72419	1	11297	11297		12.873	0.63195	1	5868700			6140	1356	3280	3311	5999	5999					-0.03661621266655857
DKEHLHGE	8	Unmodified	_DKEHLHGE_					0	0	0			REV__AUTS2|p.P917H|1|0.25|ENSG00000158321|chr7:70789966-70789966|C/A|missense_variant	REV__AUTS2|p.P917H|1|0.25|ENSG00000158321|chr7:70789966-70789966|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	482.7275085449219	2	482.727781	963.441008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.176	1	19.975	19.475	20.475	-0.20133								0	0	0	0.52323	1	6890	6890		41.84	3.8656	1		+		6141	10020	3281	3312	6000	6000					-0.04217450664430089
DKEIEKMCNFH	11	Unmodified	_DKEIEKMCNFH_					0	0	0		EXOC6|p.I372Dfs*6|1|0.08|ENSG00000138190|chr10:92934399-92934400|-/A|frameshift_variant;EXOC6|p.L640Ffs*39|1|0.37|ENSG00000138190|chr10:92974192-92974193|-/T|frameshift_variant;nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6	EXOC6|p.I372Dfs*6|1|0.08|ENSG00000138190|chr10:92934399-92934400|-/A|frameshift_variant	EXOC6|p.I372Dfs*6|1|0.08|ENSG00000138190|chr10:92934399-92934400|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	697.3148803710938	2	697.31558	1392.61661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.254	1	18.331	17.831	18.831	0.076334								0	0	0	0.94145	1	6188	6188		10.8	0.64894	1				6142	3541	3282	3313	6001	6001					-0.06399740256870246
DKEKDEKCKKD	11	Unmodified	_DKEKDEKCKKD_					0	0	0		tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	tr|U7T5V1|U7T5V1_FUSNUIron-sulfurcluster-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00170PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	683.3361206054688	2	683.337566	1364.66058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.831	1	18.831	18.331	19.331	0								0	0	0	0.95408	1	6496	6496		4.1895	1.1943	1				6143	18638	3283	3314	6002	6002					-0.007164325588973952
DKEKQQKP	8	Unmodified	_DKEKQQKP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.V1964Wfs*14|1|0.32|ENSG00000155657|chr2:178775975-178775975|T/-|frameshift_variant;TTN|p.N2114Mfs*25|1|0.05|ENSG00000155657|chr2:178775523-178775523|T/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.23|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;TTN|p.S2859Qfs*30|1|0.21|ENSG00000155657|chr2:178770127-178770127|G/-|frameshift_variant;TTN|p.I3592Lfs*36|1|0.25|ENSG00000155657|chr2:178741508-178741508|T/-|frameshift_variant;TTN|p.P4036Qfs*14|1|0.19|ENSG00000155657|chr2:178740175-178740175|G/-|frameshift_variant;TTN|p.T4116Sfs*25|1|0.04|ENSG00000155657|chr2:178739937-178739938|-/CTATTATATATGAGGAA|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.L1709Tfs*7|2|0.3|ENSG00000155657|chr2:178776739-178776740|-/T|frameshift_variant;TTN|p.K1706M|1|0.14|ENSG00000155657|chr2:178776747-178776747|T/A|missense_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S3	3	500.77471923828125	2	500.774731	999.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.789	1	32.504	32.004	33.004	-0.28511								0	0	0	0.79325	1	12030	12030		23.148	0	1				6144	4258;9506	3284	3315	6003	6003					0.035122684378507074
DKEKSHLFQHL	11	Unmodified	_DKEKSHLFQHL_					0	0	0			REV__nc|ENSG00000185880|Q86WT6-4|TRIM69	REV__nc|ENSG00000185880|Q86WT6-4|TRIM69	MSMS	HCT116MG_D190212_S1	1	691.5003051757812	2	691.364776	1380.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.814	1	34.814	34.314	35.314	0								0	0	0	0.95273	1	12930	12930		4.897	0	1		+		6145	13861	3285	3316	6004	6004					0.0398694737484675
DKELQMRMGAE	11	Unmodified	_DKELQMRMGAE_					0	0	0		RHPN1|p.T52M|1|0.25|ENSG00000158106|chr8:143375647-143375647|C/T|missense_variant	RHPN1|p.T52M|1|0.25|ENSG00000158106|chr8:143375647-143375647|C/T|missense_variant	RHPN1|p.T52M|1|0.25|ENSG00000158106|chr8:143375647-143375647|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	654.3104858398438	2	654.307755	1306.60096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.293	1	31.915	31.415	32.415	-0.37854								0	0	0	0.90489	1	11756	11756		19.362	3.2128	1				6146	18107	3286	3317	6005	6005					-0.04008026773931306
DKELRPWCF	9	Unmodified	_DKELRPWCF_					0	0	0		PLG|p.R239K|1|0.31|ENSG00000122194|chr6:160716692-160716692|G/A|missense_variant	PLG|p.R239K|1|0.31|ENSG00000122194|chr6:160716692-160716692|G/A|missense_variant	PLG|p.R239K|1|0.31|ENSG00000122194|chr6:160716692-160716692|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	597.2930908203125	2	597.292233	1192.56991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.465	1	38.376	37.876	38.876	-0.089077								0	0	0	0.76759	1	14451	14451		9.3831	1.2276	1				6147	9755	3287	3318	6006	6006					-0.018668120258553245
DKELRRRRFYR	11	Unmodified	_DKELRRRRFYR_					0	0	0			REV__TFE3|p.G539Vfs*209|1|0.32|ENSG00000068323|chrX:49030270-49030270|C/-|frameshift_variant	REV__TFE3|p.G539Vfs*209|1|0.32|ENSG00000068323|chrX:49030270-49030270|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	797.9530639648438	2	797.955489	1593.89643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.382	1	47.382	46.882	47.882	0								0	0	0	0.96003	1	18001	18001		1.0715	0.76443	1		+		6148	17628	3288	3319	6007	6007					0.12323305191239342
DKERERERERE	11	Unmodified	_DKERERERERE_					0	0	0			REV__ENST00000171887.8_1_2:218668896-218669106:-|nuORF	REV__ENST00000171887.8_1_2:218668896-218669106:-|nuORF	MSMS	HCT116MG_D190212_S1	1	766.3855590820312	2	766.382217	1530.74988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.234	1	42.234	41.734	42.734	0								0	0	0	0.95408	1	15924	15924		4.1895	1.4543	1		+		6149	11666	3289	3320	6008	6008					0.005735384448144032
DKERSRDERER	11	Unmodified	_DKERSRDERER_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11	ENSG00000116754|ENST00000370949|SRSF11	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S4	4	738.3695068359375	2	738.369109	1474.72367	0.85895	0.00063423	-0.27561	-0.0002035	0.58334	0.00043072	738.3686734890083	21.255	0.20774	21.045	20.915	21.123	-0.20959					6	3	2	0	0	0	0.74191	1	7357	7357		4.5289	0	1	3499800			6150	2536	3290	3321	6009	6009					0.005292692733746662
DKEVKSFVFV	10	Unmodified	_DKEVKSFVFV_					0	0	0		ENST00000491845.5_2_3:58978268-59035690:-|nuORF;ENST00000472469.5_2_3:58870372-59035390:-|nuORF;ENSG00000163689|ENST00000482387|CFAP20DC	ENST00000491845.5_2_3:58978268-59035690:-|nuORF	ENST00000491845.5_2_3:58978268-59035690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	598.8837890625	2	599.329339	1196.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.084	1	44.084	43.584	44.584	0								0	0	0	0.92607	1	16673	16673		10.074	0.52995	1				6151	4622	3291	3322	6010	6010					0.05366854337330551
DKEWFSAP	8	Unmodified	_DKEWFSAP_					0	0	0			REV__ENST00000504002.1_1_4:70715089-70723308:-|nuORF	REV__ENST00000504002.1_1_4:70715089-70723308:-|nuORF	MSMS	HCT116MG_D190212_S4	4	490.22760009765625	2	490.229625	978.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.909	1	21.69	21.19	22.19	-0.21832								0	0	0	0.58904	1	7591	7591		38.151	6.1137	1		+		6152	11366	3292	3323	6011	6011					-0.0453878089057298
DKFEETNR	8	Unmodified	_DKFEETNR_					0	0	0			REV__tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1	REV__tr|U7SZQ6|U7SZQ6_FUSNUphosphoserinephosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00833PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.769775390625	2	519.74617	1037.47779	0.31592	0.0001642	-2.5437	-0.0013221	-2.2278	-0.0011579	519.7456609374977	17.398	0.5225	17.048	16.821	17.343	-0.34933					14	9	2	0	0	0	0.29935	1	5983	5983		17.113	4.0704	1	2939100	+		6153	17883	3293	3324	6012	6012					-0.039451988385280856
DKFFQDETP	9	Unmodified	_DKFFQDETP_					0	0	0			REV__LPIN2|p.I662Yfs*22|1|0.08|ENSG00000101577|chr18:2924502-2924503|-/G|frameshift_variant	REV__LPIN2|p.I662Yfs*22|1|0.08|ENSG00000101577|chr18:2924502-2924503|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	563.7545166015625	2	563.756204	1125.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.803	1	18.623	18.123	19.123	-0.18052								0	0	0	0.32687	1	6336	6336		38.176	6.9072	1		+		6154	11128	3294	3325	6013	6013					-0.05987447898564824
DKFPKLMP	8	Unmodified	_DKFPKLMP_					0	0	0			REV__tr|U7SKU3|U7SKU3_FUSNUYggTfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01935PE=4SV=1	REV__tr|U7SKU3|U7SKU3_FUSNUYggTfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01935PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	488.2701110839844	2	488.270238	974.525924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.523	1	29.523	29.023	30.023	0								0	0	0	0.8837	1	10793	10793		10.074	1.4806	1		+		6155	17703	3295	3326	6014	6014					0.03764203547825673
DKFRDPLNNFG	11	Unmodified	_DKFRDPLNNFG_					0	0	0			REV__nc|ENSG00000170340|Q9NY97-2|B3GNT2	REV__nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-SECPEP	HCT116MG_D190212_S2	2	662.2144775390625	2	661.828026	1321.6415	0.33902	0.00022437	0.37911	0.00025091	0.71813	0.00047528	661.8282089989547	19.075	0.20875	18.706	18.575	18.784	-0.3695					5	3	2	0	0	0	0.36447	1	6618	6618		2.2828	0	1	8478100	+		6156	13292	3296	3327	6015	6015					-0.006456010676402002
DKFTNDERGPA	11	Unmodified	_DKFTNDERGPA_					0	0	0			REV__nc|ENSG00000197971|P02686-2|MBP	REV__nc|ENSG00000197971|P02686-2|MBP	MULTI-MSMS	HCT116MG_D190212_S3	3	625.2945556640625	2	625.294016	1248.57348	0.38329	0.00023967	0.42038	0.00026286	0.80367	0.00050253	625.2946336588815	22.582	1.8115	22.563	21.657	23.469	-0.018869					66	34	4	0	0	0	0.7093	1	8174	8174		18.373	1.2602	1	30973000	+		6157	14100	3297	3328	6016	6016					-0.04086470718266355
DKGAEKKDVA	10	Unmodified	_DKGAEKKDVA_					0	0	0			REV__nc|ENSG00000163431|P29536-2|LMOD1	REV__nc|ENSG00000163431|P29536-2|LMOD1	MULTI-MSMS	HCT116MG_D190212_S4	4	530.78564453125	2	530.785296	1059.55604	0.38724	0.00020554	0.22637	0.00012016	0.61361	0.00032569	530.7853081925201	22.518	0.15586	22.287	22.192	22.348	-0.23105					4	2	2	0	0	0	0.76143	1	7861	7861		15.248	0.41021	1	1658600	+		6158	12921	3298	3329	6017	6017					0.028642337467317702
DKGEKYAGE	9	Unmodified	_DKGEKYAGE_					0	0	0			REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	498.73541259765625	2	498.735271	995.45599	0.56226	0.00028042	-0.20246	-0.00010097	0.35981	0.00017945	498.73534325456967	25.497	0.31214	25.218	25.11	25.422	-0.27958					8	5	2	0	0	0	0.17622	1	9083	9083		43.772	3.8227	1	2805500	+		6159	18008	3299	3330	6018	6018					-0.04192003587104409
DKGGLRYCIN	10	Unmodified	_DKGGLRYCIN_					0	0	0		tr|U7STD0|U7STD0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrBPE=3SV=1	tr|U7STD0|U7STD0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrBPE=3SV=1	tr|U7STD0|U7STD0_FUSNUMultifunctionalfusionproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrBPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	569.7940063476562	2	569.787315	1137.56008	0.52425	0.00029871	-0.31183	-0.00017768	0.21243	0.00012104	570.2884658283106	28.289	0.62412	27.957	27.648	28.272	-0.33138					20	11	2	0	0	0	0.28233	1	10070	10070		27.629	15.388	1	4055800			6160	18434	3300	3331	6019	6019					-0.0032000003122902854
DKGHDVTFYK	10	Unmodified	_DKGHDVTFYK_					0	0	0		ENST00000481568.2_1_10:73520406-73521697:-|nuORF;ENSG00000107738|ENST00000394957|VSIR	ENST00000481568.2_1_10:73520406-73521697:-|nuORF	ENST00000481568.2_1_10:73520406-73521697:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	605.2988891601562	2	605.29857	1208.58259	0.49769	0.00030125	-0.029143	-1.764E-05	0.46855	0.00028361	605.2985016035293	18.971	0.20898	18.601	18.471	18.68	-0.3695					7	3	3	0	0	0	0.69965	1	6581	6581		20.415	2.0414	1	8883200			6161	2125	3301	3332	6020	6020					-0.013360773619751853
DKGKENEYKDK	11	Unmodified	_DKGKENEYKDK_					0	0	0		CNGB3|p.D739Y|1|0.34|ENSG00000170289|chr8:86576019-86576019|C/A|missense_variant	CNGB3|p.D739Y|1|0.34|ENSG00000170289|chr8:86576019-86576019|C/A|missense_variant	CNGB3|p.D739Y|1|0.34|ENSG00000170289|chr8:86576019-86576019|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	677.336181640625	2	677.335881	1352.65721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.047	1	21.081	20.581	21.581	0.034473								0	0	0	0.91979	1	7314	7314		17.443	5.202	1				6162	489	3302	3333	6021	6021					-0.005013593412513728
DKGKLYRWVRV	11	Unmodified	_DKGKLYRWVRV_					0	0	0			REV__AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant	REV__AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	710.2333984375	2	710.414603	1418.81465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.91	1	42.605	42.105	43.105	-0.30472								0	0	0	0.95636	1	15999	15999		2.9952	0	1		+		6163	9889	3303	3334	6022	6022					0.12199809779417592
DKGNNLSYQ	9	Unmodified	_DKGNNLSYQ_					0	0	0			REV__RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	REV__RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	519.7459716796875	2	519.74617	1037.47779	0.12303	6.3944E-05	-1.5474	-0.00080428	-1.4244	-0.00074033	519.7459430282812	16.958	1.5085	17.042	15.924	17.433	0.084467					36	28	2	0	0	0	0.1935	1	5686	5686		41.956	7.5538	1	8940100	+		6164	13988	3304	3335	6023	6023					-0.03945198838550823
DKGNVEMIKDH	11	Unmodified	_DKGNVEMIKDH_					0	0	0			REV__ENSG00000165966|ENST00000402685|PDZRN4	REV__ENSG00000165966|ENST00000402685|PDZRN4	MSMS	HCT116MG_D190212_S4	4	643.3165283203125	2	643.313894	1284.61324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.209	1	27.877	27.377	28.377	-0.33138								0	0	0	0.93351	1	10134	10134		14.957	2.7165	1		+		6165	13084	3305	3336	6024	6024					-0.017686670392322412
DKGPAAIEECC	11	Unmodified	_DKGPAAIEECC_					0	0	0		AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant;AGL|p.N1304Ifs*10|1|0.38|ENSG00000162688|chr1:99912472-99912472|A/-|frameshift_variant;AGL|p.K1407Nfs*8|1|0.39|ENSG00000162688|chr1:99915441-99915441|A/-|frameshift_variant;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	568.2727661132812	2	568.241549	1134.46855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.443	1	23.403	22.903	23.903	-0.03968								0	0	0	0.87053	1	8277	8277		23.79	9.3844	1				6166	76	3306	3337	6025	6025					-0.09331051510707766
DKGPPHQEQ	9	Unmodified	_DKGPPHQEQ_					0	0	0			REV__ENST00000216068.8_1_22:39178800-39190165:-|nuORF	REV__ENST00000216068.8_1_22:39178800-39190165:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2463989257812	2	518.246338	1034.47812	0.1197	6.2032E-05	0.19202	9.9516E-05	0.31172	0.00016155	518.2464558239052	16.906	1.0925	16.99	16.184	17.277	0.084467					43	20	3	0	0	0	0.12421	2	5645	5420;5645		53.404	5.6553	1	10504000	+		6167	14505	3307	3338	6026;6027	6027					-0.03773779118682796
DKGPPHQEQ	9	Unmodified	_DKGPPHQEQ_					0	0	0			REV__ENST00000216068.8_1_22:39178800-39190165:-|nuORF	REV__ENST00000216068.8_1_22:39178800-39190165:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	517.7667846679688	2	518.246338	1034.47812	0.1197	6.2032E-05	0.19202	9.9516E-05	0.31172	0.00016155	518.2464558239052	16.906	1.0925	16.99	16.184	17.277	0.084467					43	20	3	0	0	0	0.12897	1	5667	5667		41.956	1.7163	1	10504000	+		6168	14505	3307	3338	6028	6028					-0.03773779118682796
DKGPPHQEQ	9	Unmodified	_DKGPPHQEQ_					0	0	0			REV__ENST00000216068.8_1_22:39178800-39190165:-|nuORF	REV__ENST00000216068.8_1_22:39178800-39190165:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	518.246338	1034.47812	0.56887	0.00029482	-0.11371	-5.893E-05	0.45516	0.00023589	518.2464486217339	17.228	0.46948	17.228	16.994	17.463	0	0.011854	-0.0002937	NaN	53.404	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1908100	+		6169	14505	3307	3338							-0.03773779118682796
DKGSKRRP	8	Unmodified	_DKGSKRRP_					0	0	0			REV__ENST00000513778.1_1_4:6695618-6698766:+|nuORF	REV__ENST00000513778.1_1_4:6695618-6698766:+|nuORF	MSMS	HCT116MG_D190212_S4	4	472.2764587402344	2	472.275232	942.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.903	1	26.592	26.092	27.092	-0.3114								0	0	0	0.85589	1	9606	9606		18.135	0	1		+		6170	16195	3308	3339	6029	6029					0.062345275974166725
DKGTEVSVSDP	11	Unmodified	_DKGTEVSVSDP_					0	0	0			REV__MYBPC2|p.P573Lfs*7|1|0.26|ENSG00000086967|chr19:50451968-50451968|C/-|frameshift_variant	REV__MYBPC2|p.P573Lfs*7|1|0.26|ENSG00000086967|chr19:50451968-50451968|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	567.7717895507812	2	567.269675	1132.5248	0.33053	0.0001875	1.5271	0.00086626	1.8576	0.0010538	567.7721407450026	16.464	0.78034	16.549	16.341	17.121	0.085423					22	14	3	0	0	0	0.72004	1	5530	5530		14.405	0.49933	1	1648000	+		6171	10940	3309	3340	6030	6030					-0.036163840780318424
DKGVEHLIP	9	Unmodified	_DKGVEHLIP_					0	0	0		ENST00000607643.1_1_12:53438913-53439774:-|nuORF;ENST00000546566.5_1_12:53434014-53439816:-|nuORF;ENST00000546793.1_1_12:53438990-53439816:-|nuORF	ENST00000607643.1_1_12:53438913-53439774:-|nuORF	ENST00000607643.1_1_12:53438913-53439774:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	504.280029296875	2	504.279649	1006.54475	0.27431	0.00013833	0.89282	0.00045023	1.1671	0.00058856	504.28022197644265	42.603	0.35778	42.228	42.046	42.404	-0.37565					11	6	2	0	0	0	0.31596	1	15673	15673		29.082	2.8134	1	3873400			6172	8729	3310	3341	6031	6031					0.04173456443231771
DKHFYLTNCKL	11	Unmodified	_DKHFYLTNCKL_					0	0	0			REV__nc|ENSG00000157510|Q8TED9-4|AFAP1L1	REV__nc|ENSG00000157510|Q8TED9-4|AFAP1L1	MSMS	HCT116MG_D190212_S3	3	691.35302734375	2	691.35028	1380.68601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.839	1	40.538	40.038	41.038	-0.30161								0	0	0	0.94851	1	15174	15174		7.1017	1.3699	1		+		6173	12755	3311	3342	6032	6032					0.010890867542002525
DKHIFAFSGQ	10	Unmodified	_DKHIFAFSGQ_					0	0	0			REV__ENSG00000140093|ENST00000261994|SERPINA10	REV__ENSG00000140093|ENST00000261994|SERPINA10	MULTI-SECPEP	HCT116MG_D190212_S4	4	575.7889404296875	2	575.288005	1148.56146	0.38164	0.00021955	-0.18669	-0.0001074	0.19495	0.00011215	575.2881986316078	26.637	0.20785	26.337	26.234	26.441	-0.30087					5	3	2	0	0	0	0.29716	1	9538	9538		15.248	2.206	1	2658700	+	+	6174	10251	3312	3343	6033	6033					-0.006880426708221421
DKHQKKPV	8	Unmodified	_DKHQKKPV_					0	0	0			REV__nc|ENSG00000160606|Q96CP7-2|TLCD1	REV__nc|ENSG00000160606|Q96CP7-2|TLCD1	MSMS	HCT116MG_D190212_S4	4	490.2860107421875	2	490.287808	978.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.228	1	27.896	27.396	28.396	-0.33138								0	0	0	0.8837	1	10141	10141		9.3474	0.75416	1		+		6175	12836	3313	3344	6034	6034					0.07092582399991443
DKIANIYQKAF	11	Unmodified	_DKIANIYQKAF_					0	0	0			REV__nc|ENSG00000178209|Q15149|PLEC	REV__nc|ENSG00000178209|Q15149|PLEC	MSMS	HCT116MG_D190212_S4	4	655.85595703125	2	655.858795	1309.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.527	1	39.147	38.647	39.647	-0.38055								0	0	0	0.94145	1	14526	14526		10.8	0.72558	1		+		6176	17228	3314	3345	6035	6035					0.06057330631665536
DKIEAKFDKEF	11	Unmodified	_DKIEAKFDKEF_					0	0	0		ENSG00000177432|ENST00000323061|NAP1L5	ENSG00000177432|ENST00000323061|NAP1L5	ENSG00000177432|ENST00000323061|NAP1L5	MSMS	HCT116MG_D190212_S4	4	685.3518676757812	2	685.353542	1368.69253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.385	1	22.158	21.658	22.658	-0.22777								0	0	0	0.95408	1	7784	7784		4.1895	0.90819	1				6177	5457	3315	3346	6036	6036					0.022933031865704834
DKIIQEPP	8	Unmodified	_DKIIQEPP_					0	0	0		ENST00000507175.5_1_5:145826912-145859658:+|nuORF;TCERG1|p.K627Nfs*37|1|0.1|ENSG00000113649|chr5:146480083-146480083|A/-|frameshift_variant;TCERG1|p.M735Nfs*8|1|0.26|ENSG00000113649|chr5:146493003-146493004|-/A|frameshift_variant;TCERG1|p.K957Rfs*17|1|0.28|ENSG00000113649|chr5:146507160-146507160|A/-|frameshift_variant;TCERG1|p.I983Nfs*3|1|0.36|ENSG00000113649|chr5:146507901-146507902|-/A|frameshift_variant;TCERG1|p.I983Sfs*41|1|0.35|ENSG00000113649|chr5:146507902-146507902|A/-|frameshift_variant;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	MSMS	HCT116MG_D190212_S3	3	470.66461181640625	2	470.260925	938.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.769	1	28.548	28.048	29.048	-0.22058								0	0	0	0.76512	1	10425	10425		25.399	2.2509	1				6178	2401	3316	3347	6037	6037					0.035583651776164515
DKILKKRELKK	11	Unmodified	_DKILKKRELKK_					0	0	0			REV__nc|ENSG00000155085|Q5TCS8-5|AK9	REV__nc|ENSG00000155085|Q5TCS8-5|AK9	MSMS	HCT116MG_D190212_S3	3	699.9637451171875	2	699.961386	1397.90822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.405	1	35.106	34.606	35.606	-0.29922								0	0	0	0.9598	1	13067	13067		1.1933	1.1933	1		+		6179	9901	3317	3348	6038	6038					0.22518109161887878
DKILNTYNKRF	11	Unmodified	_DKILNTYNKRF_					0	0	0		tr|U7SPE4|U7SPE4_FUSNUTransglycosylaseSLTdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01838PE=3SV=1	tr|U7SPE4|U7SPE4_FUSNUTransglycosylaseSLTdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01838PE=3SV=1	tr|U7SPE4|U7SPE4_FUSNUTransglycosylaseSLTdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01838PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	706.3858032226562	2	706.388251	1410.76195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.44	1	42.44	41.94	42.94	0								0	0	0	0.95196	1	16007	16007		5.2969	0.39987	1				6180	18381	3318	3349	6039	6039					0.0729980692594836
DKINTTEIFHE	11	Unmodified	_DKINTTEIFHE_					0	0	0			REV__ENST00000579913.5_1_17:43591508-43591925:-|nuORF	REV__ENST00000579913.5_1_17:43591508-43591925:-|nuORF	MSMS	HCT116MG_D190212_S3	3	673.833740234375	2	673.832974	1345.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.251	1	42.946	42.446	43.446	-0.30472								0	0	0	0.94851	1	16133	16133		7.1017	0.89594	1		+		6181	16575	3319	3350	6040	6040					-0.007604578529253558
DKIRGHIEKRW	11	Unmodified	_DKIRGHIEKRW_					0	0	0			REV__ENSG00000152760|ENST00000282670|DYNLT5	REV__ENSG00000152760|ENST00000282670|DYNLT5	MSMS	HCT116MG_D190212_S2	2	719.4068603515625	2	719.407309	1436.80007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.505	1	28.175	27.675	28.675	-0.32987								0	0	0	0.95025	1	10400	10400		6.1918	0.46	1		+		6182	12635	3320	3351	6041	6041					0.09913737631291042
DKIYREAP	8	Unmodified	_DKIYREAP_					0	0	0			REV__ENST00000558733.5_1_15:58947546-59041769:-|nuORF	REV__ENST00000558733.5_1_15:58947546-59041769:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	495.7409362792969	2	496.263999	990.513445	0.34959	0.00017349	0.31268	0.00015517	0.66228	0.00032867	496.2641495743365	30.293	0.46198	30.043	29.65	30.112	-0.24946					13	8	2	0	0	0	0.2797	1	10987	10987		15.847	0	1	8819900	+		6183	9846	3321	3352	6042	6042					0.01780883409139733
DKKFEGSGEGP	11	Unmodified	_DKKFEGSGEGP_					0	0	0			REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	MULTI-MSMS	HCT116MG_D190212_S3	3	576.2740478515625	2	575.772385	1149.53022	0.5409	0.00031143	-0.34021	-0.00019588	0.20069	0.00011555	575.7720413426872	26.852	1.3543	26.7	25.836	27.19	-0.15133					46	25	2	0	0	0	0.71271	1	9744	9744		17.113	4.8722	1	6682300	+		6184	14119	3322	3353	6043	6043					-0.03856660495557662
DKKFREIVEKL	11	Unmodified	_DKKFREIVEKL_					0	0	0			REV__ENSG00000110066|ENST00000304363|KMT5B	REV__ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S3	3	468.7599792480469	3	468.94516	1403.81365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.82	1	33.53	33.03	34.03	-0.29013								0	0	0	0.95636	1	12427	12427		1.2148	0	1		+		6185	11389	3323	3354	6044	6044					0.1278955061986835
DKKKKNYWLV	10	Unmodified	_DKKKKNYWLV_					0	0	0		ENST00000295112.13_1_2:55509501-55511570:+|nuORF;nc|ENSG00000293422|A6NEY8|PRORSD1P	ENST00000295112.13_1_2:55509501-55511570:+|nuORF	ENST00000295112.13_1_2:55509501-55511570:+|nuORF	MSMS	HCT116MG_D190212_S2	2	661.3851928710938	2	661.38498	1320.75541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.767	1	22.382	21.882	22.882	-0.3852								0	0	0	0.95507	1	8082	8082		3.5965	0	1				6186	6971	3324	3355	6045	6045					0.10785913765244004
DKKLTKYIKKF	11	Unmodified	_DKKLTKYIKKF_					0	0	0			REV__nc|ENSG00000089737|Q9GZR7-2|DDX24	REV__nc|ENSG00000089737|Q9GZR7-2|DDX24	MSMS	HCT116MG_D190212_S3	3	706.4375610351562	2	706.437212	1410.85987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.993	1	40.691	40.191	41.191	-0.30185								0	0	0	0.9598	1	15236	15236		1.1933	0	1		+		6187	10975	3325	3356	6046	6046					0.17087615521950283
DKKMLTKTKRR	11	Unmodified	_DKKMLTKTKRR_					0	0	0			REV__ENSG00000181449|ENST00000325404|SOX2	REV__ENSG00000181449|ENST00000325404|SOX2	MSMS	HCT116MG_D190212_S1	1	702.9288330078125	2	702.92702	1403.83949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.378	1	32.378	31.878	32.878	0								0	0	0	0.95686	1	11946	11946		2.7352	1.2533	1		+		6188	13690	3326	3357	6047	6047					0.1537212159050796
DKKQGKRRKKK	11	Unmodified	_DKKQGKRRKKK_					0	0	0		ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	ENST00000481407.5_1_7:92191598-92207100:-|nuORF	ENST00000481407.5_1_7:92191598-92207100:-|nuORF	MSMS	HCT116MG_D190212_S3	3	700.4539794921875	2	700.452051	1398.88955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.137	1	42.832	42.332	43.332	-0.30472								0	0	0	0.9598	1	16089	16089		1.1933	0.88631	1				6189	6520	3327	3358	6048	6048					0.20605992310674992
DKKRFFPERYD	11	Unmodified	_DKKRFFPERYD_					0	0	0			REV__ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant	REV__ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	750.8853149414062	2	750.883333	1499.75211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.97	1	45.97	45.47	46.47	0								0	0	0	0.95772	1	17429	17429		2.2828	0.95324	1		+		6190	9938	3328	3359	6049	6049					0.02222618920586683
DKKRIYQMFI	10	Unmodified	_DKKRIYQMFI_					0	0	0		tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	tr|U7SYY3|U7SYY3_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00807PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	448.25091552734375	3	447.916436	1340.72748	0.060291	2.7005E-05	0.050431	2.2589E-05	0.11072	4.9594E-05	447.91634359860643	15.737	0.26044	15.822	15.717	15.977	0.085423					5	4	2	0	0	0	0.31143	1	5192	5192		0.62683	0	1	1429600			6191	18522	3329	3360	6050	6050					0.07074267513530685
DKKRKQFRRFK	11	Unmodified	_DKKRKQFRRFK_					0	0	0			REV__ENSG00000248485|ENST00000504449|PCP4L1	REV__ENSG00000248485|ENST00000504449|PCP4L1	MSMS	HCT116MG_D190212_S1	1	768.9682006835938	2	768.965326	1535.9161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.381	1	40.381	39.881	40.881	0								0	0	0	0.95996	1	15176	15176		2.7352	1.4057	1		+		6192	14372	3330	3361	6051	6051					0.16957681201984087
DKKRLNNAP	9	Unmodified	_DKKRLNNAP_					0	0	0		ENSG00000234965|ENST00000621082|SHISA8;nc|ENSG00000234965|B8ZZ34-3|SHISA8	ENSG00000234965|ENST00000621082|SHISA8	ENSG00000234965|ENST00000621082|SHISA8	MULTI-MSMS	HCT116MG_D190212_S2	2	529.3873291015625	2	528.301447	1054.58834	0.4481	0.00023673	0.12977	6.8559E-05	0.57788	0.00030529	528.3013357620913	24.765	0.41567	24.387	24.188	24.604	-0.37856					15	7	3	0	0	0	0.66233	1	8835	8835		11.64	11.64	1	28739000			6193	6524	3331	3362	6052	6052					0.06323065940364359
DKKVDYAYLE	10	Unmodified	_DKKVDYAYLE_					0	0	0			REV__tr|U7T500|U7T500_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00255PE=4SV=1	REV__tr|U7T500|U7T500_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00255PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	622.337890625	2	622.313886	1242.61322	0.58073	0.0003614	-0.33249	-0.00020691	0.24824	0.00015448	622.3137191744513	23.601	0.2088	23.601	23.471	23.679	0					6	3	2	0	0	0	0.71224	1	8411	8411		19.362	3.5148	1	7184700	+		6194	17976	3332	3363	6053	6053					0.00161656232421592
DKLDLEAP	8	Unmodified	_DKLDLEAP_					0	0	0			REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	900.4677124023438	1	900.467289	899.460012	0.8121	0.00073127	-0.30415	-0.00027387	0.50795	0.00045739	900.4667192415674	41.312	0.31247	41.01	40.788	41.1	-0.30185					8	5	2	0	0	0	0.094591	1	15374	15374		96.285	18.135	1	8135000	+		6195	13958	3333	3364	6054	6054					0.006260859066173907
DKLDLEAP	8	Unmodified	_DKLDLEAP_					0	0	0			REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	900.467289	899.460012	0.84144	0.00075769	1.5924	0.0014339	2.4338	0.0021916	900.4686456277592	41.132	0.20654	41.064	40.882	41.089	-0.068199	0.026724	0.0015749	NaN	96.285	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18834000	+		6196	13958	3333	3364							0.006260859066173907
DKLDLEAP	8	Unmodified	_DKLDLEAP_					0	0	0			REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	900.467289	899.460012	0.8121	0.00073127	-0.30415	-0.00027387	0.50795	0.00045739	900.4667192415674	41.312	0.31247	41.01	40.788	41.1	-0.30185	-0.026724	-0.00013284	NaN	96.285	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8135000	+		6197	13958	3333	3364							0.006260859066173907
DKLDNIQAY	9	Unmodified	_DKLDNIQAY_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MSMS	HCT116MG_D190212_S2	2	540.2722778320312	2	540.272021	1078.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.282	1	29.998	29.498	30.498	-0.28453								0	0	0	0.56943	1	11127	11127		25.399	0.51775	1				6198	5396	3334	3365	6055	6055					-0.006634551446268233
DKLDSHQGF	9	Unmodified	_DKLDSHQGF_					0	0	0		ENST00000466787.1_1_21:40763088-40763391:+|nuORF	ENST00000466787.1_1_21:40763088-40763391:+|nuORF	ENST00000466787.1_1_21:40763088-40763391:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	523.7489624023438	2	523.748713	1045.48287	0.37466	0.00019623	0.11911	6.2385E-05	0.49377	0.00025861	523.7487112902438	19.752	0.25981	19.377	19.246	19.506	-0.37503					7	4	2	0	0	0	0.55223	1	6897	6897		13.906	0.39817	1	10034000			6199	8110	3335	3366	6056	6056					-0.03804894975883144
DKLEGAIEP	9	Unmodified	_DKLEGAIEP_					0	0	0			REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	REV__tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	486.5648193359375	2	486.25584	970.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.868	1	26.556	26.056	27.056	-0.3114								0	0	0	0.74083	1	9592	9592		17.113	1.2657	1		+		6200	17944	3336	3367	6057	6057					0.010697574523760522
DKLEKIFQNAP	11	Unmodified	_DKLEKIFQNAP_					0	0	0		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	MSMS	HCT116MG_D190212_S4	4	434.9056396484375	3	434.906594	1301.69795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.351	1	17.18	16.68	17.68	-0.17047								0	0	0	0.95366	1	5749	5749		4.4062	0.81348	1				6201	2305	3337	3368	6058	6058					0.05917026769043332
DKLFRKKRRSW	11	Unmodified	_DKLFRKKRRSW_					0	0	0		KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant	KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	760.4511108398438	2	760.452051	1518.88955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.372	1	40.372	39.872	40.872	0								0	0	0	0.9598	1	15172	15172		1.1933	0.88631	1				6202	1514	3338	3369	6059	6059					0.15085992310673646
DKLGRKYKINP	11	Unmodified	_DKLGRKYKINP_					0	0	0		tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	tr|U7SV96|U7SV96_FUSNUThreonine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thrSPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	666.3914794921875	2	666.393336	1330.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.749	1	34.452	33.952	34.952	-0.29707								0	0	0	0.95731	1	12802	12802		2.4985	0	1				6203	18491	3339	3370	6060	6060					0.11996414651230225
DKLGVWVYKNK	11	Unmodified	_DKLGVWVYKNK_					0	0	0		nc|ENSG00000165516|Q9Y2U9-2|KLHDC2;KLHDC2|p.F310Rfs*26|1|0.05|ENSG00000165516|chr14:49780745-49780746|-/GAGAGTAT|frameshift_variant;ENSG00000165516|ENST00000298307|KLHDC2	nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	MSMS	HCT116MG_D190212_S1	1	675.3792724609375	2	675.382437	1348.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.805	1	42.805	42.305	43.305	0								0	0	0	0.94851	1	16155	16155		7.1017	1.3699	1				6204	4781	3340	3371	6061	6061					0.0898960990264186
DKLHDHVLEL	10	Unmodified	_DKLHDHVLEL_					0	0	0			REV__ENST00000557199.1_1_12:56740507-56742527:-|nuORF	REV__ENST00000557199.1_1_12:56740507-56742527:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	610.1845703125	2	609.827495	1217.64044	1.0393	0.0006338	-0.78919	-0.00048127	0.25013	0.00015254	609.8269598578838	46.869	0.51775	46.498	46.226	46.743	-0.37134					16	9	2	0	0	0	0.31063	1	17263	17263		2.9952	1.5133	1	7491500	+		6205	13307	3341	3372	6062	6062					0.04032184563470764
DKLLLPLRLIL	11	Unmodified	_DKLLLPLRLIL_					0	0	0		ENST00000507606.2_1_7:135359974-135360067:+|nuORF	ENST00000507606.2_1_7:135359974-135360067:+|nuORF	ENST00000507606.2_1_7:135359974-135360067:+|nuORF	MSMS	HCT116MG_D190212_S1	1	653.9456176757812	2	653.944673	1305.87479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.002	1	37.002	36.502	37.502	0								0	0	0	0.95636	1	13811	13811		2.9952	2.6446	1				6206	8470	3342	3373	6063	6063					0.23409107389989003
DKLLYMYQF	9	Unmodified	_DKLLYMYQF_					0	0	0			REV__ENSG00000171564|ENST00000302068|FGB	REV__ENSG00000171564|ENST00000302068|FGB	MULTI-MSMS	HCT116MG_D190212_S4	4	611.3064575195312	2	610.804642	1219.59473	0.7914	0.00048339	-0.58865	-0.00035955	0.20274	0.00012384	610.8042410193356	22.541	0.72783	22.305	21.824	22.552	-0.23527					25	13	3	0	0	0	0.43775	1	7799	7799		20.454	2.0805	1	3890800	+		6207	13353	3343	3374	6064	6064					-0.006281769431325301
DKLMNRKQIL	10	Unmodified	_DKLMNRKQIL_					0	0	0			REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF	REV__ENST00000436471.2_1_17:20385129-20386047:-|nuORF	MSMS	HCT116MG_D190212_S3	3	629.8696899414062	2	629.86864	1257.72273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.964	1	36.663	36.163	37.163	-0.30113								0	0	0	0.93202	1	13676	13676		8.7454	0.58988	1		+		6208	15625	3344	3375	6065	6065					0.10417383370759126
DKLQQSTAHVV	11	Unmodified	_DKLQQSTAHVV_					0	0	0		TAS1R2|p.R270H|1|0.26|ENSG00000179002|chr1:18854661-18854661|C/T|missense_variant	TAS1R2|p.R270H|1|0.26|ENSG00000179002|chr1:18854661-18854661|C/T|missense_variant	TAS1R2|p.R270H|1|0.26|ENSG00000179002|chr1:18854661-18854661|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	613.3299560546875	2	613.330402	1224.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.288	1	21.903	21.403	22.403	-0.3852								0	0	0	0.94755	1	7888	7888		7.609	1.4032	1				6209	18257	3345	3376	6066	6066					0.0429128307512201
DKLRKLRHWKM	11	Unmodified	_DKLRKLRHWKM_					0	0	0		ENST00000501499.1_1_12:98880883-98897610:-|nuORF	ENST00000501499.1_1_12:98880883-98897610:-|nuORF	ENST00000501499.1_1_12:98880883-98897610:-|nuORF	MSMS	HCT116MG_D190212_S1	1	755.9453125	2	755.943005	1509.87146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.6	1	40.6	40.1	41.1	0								0	0	0	0.9598	1	15265	15265		1.1933	0.84271	1				6210	8424	3346	3377	6067	6067					0.13691534064287225
DKMILLRPVP	10	Unmodified	_DKMILLRPVP_					0	0	0			REV__BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant	REV__BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	591.3585815429688	2	591.357376	1180.7002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.19	1	45.19	44.69	45.69	0								0	0	0	0.95507	1	17115	17115		3.5965	0.31518	1		+		6211	10061	3347	3378	6068	6068					0.11707783973156438
DKMKMSKLLPI	11	Unmodified	_DKMKMSKLLPI_					0	0	0			REV__ENST00000451005.5_2_2:229983-234184:-|nuORF	REV__ENST00000451005.5_2_2:229983-234184:-|nuORF	MSMS	HCT116MG_D190212_S3	3	652.3759155273438	2	652.377452	1302.74035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.48	1	37.179	36.679	37.679	-0.30137								0	0	0	0.95113	1	13884	13884		5.7319	2.1354	1		+		6212	15401	3348	3379	6069	6069					0.10108962581443848
DKNFRRGSIWR	11	Unmodified	_DKNFRRGSIWR_					0	0	0		PPFIA2|p.T1196I|1|0.11|ENSG00000139220|chr12:81263359-81263359|G/A|missense_variant	PPFIA2|p.T1196I|1|0.11|ENSG00000139220|chr12:81263359-81263359|G/A|missense_variant	PPFIA2|p.T1196I|1|0.11|ENSG00000139220|chr12:81263359-81263359|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	717.8890380859375	2	717.889284	1433.76401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.61	1	36.309	35.809	36.809	-0.30113								0	0	0	0.9465	1	13533	13533		8.1555	0	1				6213	9766	3349	3380	6070	6070					0.06448280454446831
DKNKLYIEKYR	11	Unmodified	_DKNKLYIEKYR_					0	0	0			REV__RB1|p.E322K|1|0.39|ENSG00000139687|chr13:48367518-48367518|G/A|missense_variant	REV__RB1|p.E322K|1|0.39|ENSG00000139687|chr13:48367518-48367518|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	735.4117431640625	2	735.409183	1468.80381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.932	1	44.932	44.432	45.432	0								0	0	0	0.95343	1	17011	17011		4.5289	0.33936	1		+		6214	17463	3350	3381	6071	6071					0.088163626144933
DKNLDMINAL	10	Unmodified	_DKNLDMINAL_					0	0	0			REV__nc|ENSG00000086717|O14829-5|PPEF1	REV__nc|ENSG00000086717|O14829-5|PPEF1	MSMS	HCT116MG_D190212_S1	1	573.796142578125	2	573.794806	1145.57506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.059	1	28.059	27.559	28.559	0								0	0	0	0.92607	1	10207	10207		10.074	0.6908	1		+		6215	10937	3351	3382	6072	6072					0.008094470461173842
DKNNDGRIDFD	11	Unmodified	_DKNNDGRIDFD_					0	0	0		ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	MULTI-MSMS	HCT116MG_D190212_S4	4	655.2963256835938	2	654.79438	1307.57421	0.12119	7.9354E-05	0.27809	0.00018209	0.39928	0.00026145	654.7946785710978	17.075	0.56897	16.907	16.503	17.072	-0.16771					18	10	2	0	0	0	0.7332	1	5583	5583		9.544	1.3884	1	1303000			6216	1794	3352	3383	6073	6073					-0.06727676069249355
DKNQLDSP	8	Unmodified	_DKNQLDSP_					0	0	0		ST18|p.N621Ifs*10|2|0.23|ENSG00000147488|chr8:52149922-52149922|T/-|frameshift_variant;ST18|p.E810Kfs*5|1|0.31|ENSG00000147488|chr8:52133074-52133074|T/-|frameshift_variant;ST18|p.F884Lfs*27|1|0.33|ENSG00000147488|chr8:52131972-52131972|A/-|frameshift_variant;ST18|p.L941Hfs*8|1|0.04|ENSG00000147488|chr8:52118375-52118376|-/AACTTGTGTGAAAATATAT|frameshift_variant;ENSG00000147488|ENST00000689386|ST18	ST18|p.N621Ifs*10|2|0.23|ENSG00000147488|chr8:52149922-52149922|T/-|frameshift_variant	ST18|p.N621Ifs*10|2|0.23|ENSG00000147488|chr8:52149922-52149922|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	458.7220764160156	2	458.722164	915.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.465	1	19.465	18.965	19.965	0								0	0	0	0.8837	1	6752	6752		13.508	0	1				6217	3989	3353	3384	6074	6074					-0.03132272758580257
DKNYDLYWFLD	11	Unmodified	_DKNYDLYWFLD_					0	0	0			REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MSMS	HCT116MG_D190212_S1	1	746.3427734375	2	746.343175	1490.6718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.67	1	34.67	34.17	35.17	0								0	0	0	0.95273	1	12872	12872		4.897	0	1		+		6218	17083	3354	3385	6075	6075					-0.05391287193106109
DKPADIHSH	9	Unmodified	_DKPADIHSH_					0	0	0			REV__CP|p.K282Nfs*23|1|0.33|ENSG00000047457|chr3:149207553-149207553|T/-|frameshift_variant	REV__CP|p.K282Nfs*23|1|0.33|ENSG00000047457|chr3:149207553-149207553|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	510.2489929199219	2	510.24888	1018.48321	0.048362	2.4677E-05	0.033805	1.7249E-05	0.082167	4.1926E-05	510.24887908452206	18.204	0.62122	18.029	17.532	18.153	-0.17501					15	11	2	0	0	0	0.28073	1	6128	6128		32.786	11.039	1	1034200	+	+	6219	10253	3355	3386	6076	6076					-0.025294752560625966
DKPEQSVLWFL	11	Unmodified	_DKPEQSVLWFL_					0	0	0			REV__ENST00000583808.1_1_17:7999947-8006832:-|nuORF	REV__ENST00000583808.1_1_17:7999947-8006832:-|nuORF	MSMS	HCT116MG_D190212_S3	3	681.3565063476562	2	681.358628	1360.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.479	1	29.242	28.742	29.742	-0.23655								0	0	0	0.9465	1	10711	10711		8.1555	0.54658	1		+		6220	13631	3356	3387	6077	6077					0.036779109118015185
DKPEQSVLWFL	11	Unmodified	_DKPEQSVLWFL_					0	0	0			REV__ENST00000583808.1_1_17:7999947-8006832:-|nuORF	REV__ENST00000583808.1_1_17:7999947-8006832:-|nuORF	MSMS	HCT116MG_D190212_S4	4	681.3569946289062	2	681.358628	1360.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.664	1	29.314	28.814	29.814	-0.34921								0	0	0	0.95273	1	10722	10722		4.897	0	1		+		6221	13631	3356	3387	6078	6078					0.036779109118015185
DKPGPAAPAAP	11	Unmodified	_DKPGPAAPAAP_					0	0	0			REV__nc|ENSG00000115419|O94925-2|GLS	REV__nc|ENSG00000115419|O94925-2|GLS	MULTI-SECPEP	HCT116MG_D190212_S4	4	495.7412109375	2	496.263999	990.513445	0.3613	0.0001793	-0.13286	-6.5932E-05	0.22844	0.00011337	496.2639365584104	30.292	0.40618	29.935	29.597	30.003	-0.3571					10	7	2	0	0	0	0.3312	1	10969	10969		20.415	2.2682	1	3576300	+		6222	11543	3357	3388	6079	6079					0.017808834091169956
DKPSAPIK	8	Unmodified	_DKPSAPIK_					0	0	0		nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	MSMS	HCT116MG_D190212_S4	4	428.2486877441406	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.124	1	27.792	27.292	28.292	-0.33138								0	0	0	0.8837	1	10099	10099		7.2892	0	1				6223	3652	3358	3389	6080	6080					0.05310399868744753
DKPSIVKFYPS	11	Unmodified	_DKPSIVKFYPS_					0	0	0			REV__HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	REV__HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	640.8486938476562	2	640.847896	1279.68124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.348	1	37.348	36.848	37.848	0								0	0	0	0.93749	1	13951	13951		12.873	4.7171	1		+		6224	12751	3359	3390	6081	6081					0.05258525883095899
DKPVFMEEPD	10	Unmodified	_DKPVFMEEPD_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;RALGAPA2|p.F549Lfs*4|1|0.36|ENSG00000188559|chr20:20616084-20616084|A/-|frameshift_variant;RALGAPA2|p.Y614Ffs*14|1|0.08|ENSG00000188559|chr20:20605372-20605373|-/GAACAAAAGGAAAAGA|frameshift_variant;RALGAPA2|p.S919Afs*24|1|0.29|ENSG00000188559|chr20:20573022-20573022|C/-|frameshift_variant;RALGAPA2|p.Y1040Tfs*3|1|0.35|ENSG00000188559|chr20:20571496-20571496|A/-|frameshift_variant;RALGAPA2|p.G1450Dfs*10|1|0.09|ENSG00000188559|chr20:20513020-20513020|C/-|frameshift_variant;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MSMS	HCT116MG_D190212_S4	4	603.7721557617188	2	603.770997	1205.52744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.455	1	40.076	39.576	40.576	-0.37828								0	0	0	0.94551	1	14842	14842		5.7319	1.203	1				6225	5990;9801	3360	3391	6082	6082					-0.06710251944718948
DKQLNWYDNFY	11	Unmodified	_DKQLNWYDNFY_					0	0	0			REV__nc|ENSG00000104853|O96005-3|CLPTM1	REV__nc|ENSG00000104853|O96005-3|CLPTM1	MSMS	HCT116MG_D190212_S2	2	753.3414916992188	2	753.338424	1504.66229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.024	1	22.639	22.139	23.139	-0.3852								0	0	0	0.9465	1	8186	8186		8.1555	2.8586	1		+		6226	11222	3361	3392	6083	6083					-0.06985055478617141
DKQQMDAELR	10	Unmodified	_DKQQMDAELR_					0	0	0		ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;CACNA1A|p.P2221Rfs*45|1|0.48|ENSG00000141837|chr19:13208879-13208879|A/-|frameshift_variant;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-5|CACNA1A	ENSG00000141837|ENST00000360228|CACNA1A	ENSG00000141837|ENST00000360228|CACNA1A	MSMS	HCT116MG_D190212_S4	4	617.362060546875	2	617.298244	1232.58194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.209	1	22.961	22.461	23.461	-0.24775								0	0	0	0.93202	1	8114	8114		8.7454	0	1				6227	3735	3362	3393	6084	6084					-0.025052400733329705
DKQRRKTEWFR	11	Unmodified	_DKQRRKTEWFR_					0	0	0		ENSG00000107560|ENST00000355624|RAB11FIP2;nc|ENSG00000107560|Q7L804-2|RAB11FIP2;RAB11FIP2|p.P214Afs*17|1|0.1|ENSG00000107560|chr10:118040280-118040281|-/T|frameshift_variant	ENSG00000107560|ENST00000355624|RAB11FIP2	ENSG00000107560|ENST00000355624|RAB11FIP2	MSMS	HCT116MG_D190212_S1	1	775.4201049804688	2	775.420948	1548.82734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.006	1	30.006	29.506	30.506	0								0	0	0	0.95636	1	10989	10989		2.9952	0	1				6228	2117	3363	3394	6085	6085					0.0748822117166128
DKQSQNYQ	8	Unmodified	_DKQSQNYQ_					0	0	0			REV__ENSG00000282757|ENST00000633875|DUXB	REV__ENSG00000282757|ENST00000633875|DUXB	MULTI-SECPEP	HCT116MG_D190212_S4	4	506.2402038574219	2	505.73052	1009.44649	0.048935	2.4748E-05	-0.83775	-0.00042367	-0.78881	-0.00039893	505.73032010593573	17.886	1.2968	17.711	17.376	18.673	-0.17501					30	24	2	0	0	0	0.26426	1	5889	5889		20.454	0	1	1651000	+		6229	14474	3364	3395	6086	6086					-0.05785771872615442
DKREQNSD	8	Unmodified	_DKREQNSD_					0	0	0			REV__ENSG00000155827|ENST00000389120|RNF20	REV__ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	HCT116MG_D190212_S2	2	496.7578125	2	496.225602	990.436651	0.3466	0.00017199	0.31501	0.00015632	0.66161	0.00032831	496.2261044466378	19.495	0.36399	19.126	18.992	19.356	-0.3695					13	6	3	0	0	0	0.30704	1	6812	6812		19.257	4.8516	1	20712000	+		6230	12710	3365	3396	6087	6087					-0.05894959877991823
DKRKFTKRRVE	11	Unmodified	_DKRKFTKRRVE_					0	0	0			REV__GTF3A|p.C222R|1|0.06|ENSG00000122034|chr13:27434825-27434825|T/C|missense_variant	REV__GTF3A|p.C222R|1|0.06|ENSG00000122034|chr13:27434825-27434825|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	731.930908203125	2	731.933691	1461.85283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.091	1	49.091	48.591	49.591	0								0	0	0	0.95196	1	18697	18697		5.2969	2.7984	1		+		6231	16863	3366	3397	6088	6088					0.1403769569412816
DKRKSRRRRRR	11	Unmodified	_DKRKSRRRRRR_					0	0	0			REV__ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant	REV__ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	785.3209838867188	2	785.490896	1568.96724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.789	1	48.789	48.289	49.289	0								0	0	0	0.96003	1	18575	18575		1.0715	0.76443	1		+		6232	9863	3367	3398	6089	6089					0.20551443019417093
DKRKVKLLL	9	Unmodified	_DKRKVKLLL_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1;ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	557.7724609375	2	556.879333	1111.74411	0.28736	0.00016002	0.12741	7.0952E-05	0.41477	0.00023098	556.8795761945698	20.393	0.20827	20.442	20.311	20.52	0.048107					5	3	2	0	0	0	0.76185	1	7007	7007		1.8442	0	1	2728700			6233	4672	3368	3399	6090	6090					0.1927113646181624
DKRLNEKRWNE	11	Unmodified	_DKRLNEKRWNE_					0	0	0			REV__ENSG00000188315|ENST00000343010|C3orf62	REV__ENSG00000188315|ENST00000343010|C3orf62	MSMS	HCT116MG_D190212_S1	1	744.3877563476562	2	744.389313	1486.76407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.076	1	41.076	40.576	41.576	0								0	0	0	0.95343	1	15457	15457		4.5289	1.2476	1		+		6234	13950	3369	3400	6091	6091					0.040162356637893026
DKRQSSVRLAA	11	Unmodified	_DKRQSSVRLAA_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18	REV__ENSG00000182095|ENST00000430969|TNRC18	MSMS	HCT116MG_D190212_S1	1	615.85009765625	2	615.849293	1229.68403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.393	1	27.393	26.893	27.893	0								0	0	0	0.94145	1	9938	9938		10.8	0.72558	1		+		6235	13703	3370	3401	6092	6092					0.07837794060628767
DKRREALRRLR	11	Unmodified	_DKRREALRRLR_					0	0	0		ENST00000528698.5_1_11:407426-409994:-|nuORF	ENST00000528698.5_1_11:407426-409994:-|nuORF	ENST00000528698.5_1_11:407426-409994:-|nuORF	MSMS	HCT116MG_D190212_S1	1	734.9505615234375	2	734.950207	1467.88586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.492	1	39.492	38.992	39.992	0								0	0	0	0.95772	1	14816	14816		2.2828	0	1				6236	8605	3371	3402	6093	6093					0.17063322536819214
DKRRGRNYKWK	11	Unmodified	_DKRRGRNYKWK_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MSMS	HCT116MG_D190212_S3	3	753.9210815429688	2	753.923658	1505.83276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.712	1	30.451	29.951	30.951	-0.26071								0	0	0	0.95636	1	11193	11193		2.9952	0	1		+		6237	13826	3372	3403	6094	6094					0.10007944754147502
DKRRLIFKRIQ	11	Unmodified	_DKRRLIFKRIQ_					0	0	0			REV__ZNF454|p.N204Mfs*52|1|0.31|ENSG00000178187|chr5:178965009-178965009|A/-|frameshift_variant	REV__ZNF454|p.N204Mfs*52|1|0.31|ENSG00000178187|chr5:178965009-178965009|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	736.9608154296875	2	736.962252	1471.90995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.228	1	27.228	26.728	27.728	0								0	0	0	0.95686	1	9871	9871		2.7352	1.4057	1		+		6238	18081	3373	3404	6095	6095					0.19287162970499594
DKRRQQRHKRA	11	Unmodified	_DKRRQQRHKRA_					0	0	0			REV__ENST00000494993.1_1_15:91475575-91475770:-|nuORF	REV__ENST00000494993.1_1_15:91475575-91475770:-|nuORF	MSMS	HCT116MG_D190212_S1	1	739.9292602539062	2	739.929806	1477.84506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.388	1	39.388	38.888	39.888	0								0	0	0	0.95636	1	14774	14774		2.9952	0	1		+		6239	13803	3374	3405	6096	6096					0.12524981217211462
DKRRRKYQEVN	11	Unmodified	_DKRRRKYQEVN_					0	0	0		tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	tr|U7T2B4|U7T2B4_FUSNULeucine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=leuSPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	746.4102172851562	2	746.41058	1490.80661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.211	1	53.211	52.711	53.711	0								0	0	0	0.95636	1	20373	20373		2.9952	0	1				6240	18572	3375	3406	6097	6097					0.08083630792020813
DKRRRRRRRRR	11	Unmodified	_DKRRRRRRRRR_					0	0	0			REV__ENSG00000229674|ENST00000448797|H2AL3	REV__ENSG00000229674|ENST00000448797|H2AL3	MSMS	HCT116MG_D190212_S1	1	834.0286865234375	2	834.028511	1666.04247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.52	1	41.52	41.02	42.02	0								0	0	0	0.96003	1	15636	15636		1.0715	1.0715	1		+		6241	14316	3376	3407	6098	6098					0.23609045270472961
DKRTAKLHKKR	11	Unmodified	_DKRTAKLHKKR_					0	0	0			REV__nc|ENSG00000124782|Q92766-5|RREB1	REV__nc|ENSG00000124782|Q92766-5|RREB1	MSMS	HCT116MG_D190212_S2	2	690.8687133789062	2	690.930951	1379.84735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.156	1	24.781	24.281	25.281	-0.37521								0	0	0	0.95772	1	9047	9047		2.2828	0.80087	1		+		6242	11797	3377	3408	6099	6099					0.17262016902282085
DKRVVRYGRQA	11	Unmodified	_DKRVVRYGRQA_					0	0	0			REV__ENSG00000215906|ENST00000426928|LACTBL1	REV__ENSG00000215906|ENST00000426928|LACTBL1	MSMS	HCT116MG_D190212_S3	3	674.3850708007812	2	674.383834	1346.75312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.153	1	34.855	34.355	35.355	-0.29816								0	0	0	0.95196	1	12965	12965		5.2969	0.39987	1		+		6243	14285	3378	3409	6100	6100					0.09360878080178736
DKRYKSAVVAA	11	Unmodified	_DKRYKSAVVAA_					0	0	0		ENSG00000145626|ENST00000274278|UGT3A1	ENSG00000145626|ENST00000274278|UGT3A1	ENSG00000145626|ENST00000274278|UGT3A1	MSMS	HCT116MG_D190212_S1	1	403.2323303222656	3	403.2313	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6472	1	5.6472	5.1472	6.1472	0								0	0	0	0.9619	1	1699	1699		0.094841	0.094841	1				6244	3916	3379	3410	6101	6101					0.07700177317428825
DKRYKSAVVAA	11	Unmodified	_DKRYKSAVVAA_					0	0	0		ENSG00000145626|ENST00000274278|UGT3A1	ENSG00000145626|ENST00000274278|UGT3A1	ENSG00000145626|ENST00000274278|UGT3A1	MSMS	HCT116MG_D190212_S2	2	403.2325744628906	3	403.2313	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.21584	1	0.2119	-0.2881	0.7119	-0.0039395								0	0	0	0.9619	1	84	84		0.094841	0.094841	1				6245	3916	3379	3410	6102	6102					0.07700177317428825
DKRYKSAVVAA	11	Unmodified	_DKRYKSAVVAA_					0	0	0		ENSG00000145626|ENST00000274278|UGT3A1	ENSG00000145626|ENST00000274278|UGT3A1	ENSG00000145626|ENST00000274278|UGT3A1	MSMS	HCT116MG_D190212_S2	2	403.2324523925781	3	403.2313	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.7817	1	7.5659	7.0659	8.0659	-0.21581								0	0	0	0.9619	1	2434	2434		0.094841	0.094841	1				6246	3916	3379	3410	6103	6103					0.07700177317428825
DKSFRLKAQLL	11	Unmodified	_DKSFRLKAQLL_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MSMS	HCT116MG_D190212_S3	3	440.26611328125	3	440.266233	1317.77687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.616	1	37.314	36.814	37.814	-0.30137								0	0	0	0.94536	1	13938	13938		8.7518	1.7147	1				6247	6138	3380	3411	6104	6104					0.13069298793993767
DKSQHTFPAP	10	Unmodified	_DKSQHTFPAP_					0	0	0		ENST00000446044.5_1_3:50685932-50686385:+|nuORF	ENST00000446044.5_1_3:50685932-50686385:+|nuORF	ENST00000446044.5_1_3:50685932-50686385:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	563.7765502929688	2	564.277638	1126.54072	0.64008	0.00036118	-0.37977	-0.00021429	0.26031	0.00014689	564.2773864487092	31.785	0.51765	31.536	31.354	31.872	-0.24883					12	9	2	0	0	0	0.30239	1	11731	11731		12.241	0	1	13769000			6248	7952	3381	3412	6105	6105					-0.017486330504880243
DKSVSDKRV	9	Unmodified	_DKSVSDKRV_					0	0	0			REV__RNF168|p.E246Q|1|0.31|ENSG00000163961|chr3:196475257-196475257|C/G|missense_variant	REV__RNF168|p.E246Q|1|0.31|ENSG00000163961|chr3:196475257-196475257|C/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	517.28662109375	2	517.285463	1032.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.29	1	37.989	37.489	38.489	-0.30137								0	0	0	0.76759	1	14179	14179		9.3831	0.63772	1		+		6249	12965	3382	3413	6106	6106					0.041396534665636864
DKSYTFDYEYR	11	Unmodified	_DKSYTFDYEYR_					0	0	0		tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	tr|U7SFV1|U7SFV1_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02243PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	743.82861328125	2	743.827889	1485.64122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.583	1	38.201	37.701	38.701	-0.38163								0	0	0	0.95408	1	14146	14146		4.1895	1.1943	1				6250	18293	3383	3414	6107	6107					-0.0821706557815105
DKTHERTY	8	Unmodified	_DKTHERTY_					0	0	0			REV__nc|ENSG00000138835|P49796-9|RGS3	REV__nc|ENSG00000138835|P49796-9|RGS3	MULTI-MSMS	HCT116MG_D190212_S4	4	526.246826171875	2	525.254163	1048.49377	0.36299	0.00019066	0.048448	2.5448E-05	0.41144	0.00021611	525.2541710845139	29.72	0.46798	29.371	29.189	29.657	-0.34921					17	8	3	0	0	0	0.7524	1	10696	10696		16.942	2.104	1	17774000	+		6251	12245	3384	3415	6108	6108					-0.028534926015936435
DKTPNYYDFYI	11	Unmodified	_DKTPNYYDFYI_					0	0	0			REV__tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	REV__tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	719.8299560546875	2	719.8299	1437.64525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.722	1	17.804	17.304	18.304	0.081358								0	0	0	0.95196	1	5973	5973		5.2969	0.39987	1		+		6252	17748	3385	3416	6109	6109					-0.0560697608443661
DKTRTQRIQL	10	Unmodified	_DKTRTQRIQL_					0	0	0		ENSG00000171243|ENST00000307068|SOSTDC1;nc|ENSG00000171243|Q6X4U4-2|SOSTDC1	ENSG00000171243|ENST00000307068|SOSTDC1	ENSG00000171243|ENST00000307068|SOSTDC1	MSMS	HCT116MG_D190212_S1	1	629.8680419921875	2	629.864943	1257.71533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.632	1	29.632	29.132	30.132	0								0	0	0	0.7978	1	10837	10837		29.082	14.243	1				6253	5183	3386	3417	6110	6110					0.09678367094693385
DKTTFEKLEY	10	Unmodified	_DKTTFEKLEY_					0	0	0		nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF;RALGPS2|p.K475Sfs*4|1|0.39|ENSG00000116191|chr1:178894013-178894013|A/-|frameshift_variant;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2	nc|ENSG00000116191|Q86X27-2|RALGPS2	nc|ENSG00000116191|Q86X27-2|RALGPS2	MSMS	HCT116MG_D190212_S3	3	637.3203735351562	2	637.319168	1272.62378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.12	1	38.818	38.318	39.318	-0.30137								0	0	0	0.92917	1	14514	14514		9.3831	0	1				6254	2506	3387	3418	6111	6111					-0.0016236111312082357
DKVKVVGT	8	Unmodified	_DKVKVVGT_					0	0	0			REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant	REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	423.2584533691406	2	423.258185	844.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.595	1	21.376	20.876	21.876	-0.21832								0	0	0	0.69969	1	7464	7464		30.637	0	1		+		6255	10935	3388	3419	6112	6112					0.07334686385820532
DKVLERKAKTY	11	Unmodified	_DKVLERKAKTY_					0	0	0			REV__JARID2|p.P592Lfs*57|2|0.38|ENSG00000008083|chr6:15496995-15496995|C/-|frameshift_variant	REV__JARID2|p.P592Lfs*57|2|0.38|ENSG00000008083|chr6:15496995-15496995|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	675.8909912109375	2	675.890626	1349.7667	0.88045	0.00059509	0.16809	0.00011361	1.0485	0.0007087	675.8904249507638	30.737	0.26011	30.737	30.555	30.815	0					6	4	2	0	0	0	0.36423	1	11314	11314		2.4985	0	1	8071800	+		6256	10498	3389	3420	6113	6113					0.10580691068753367
DKVLKILS	8	Unmodified	_DKVLKILS_					0	0	0			REV__ENSG00000167977|ENST00000301738|KCTD5	REV__ENSG00000167977|ENST00000301738|KCTD5	MSMS	HCT116MG_D190212_S2	2	458.2956848144531	2	458.29731	914.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.63	1	53.441	52.941	53.941	-0.1894								0	0	0	0.8837	1	20629	20629		4.756	0	1		+		6257	13175	3390	3421	6114	6114					0.11936118971038923
DKVPEPGVP	9	Unmodified	_DKVPEPGVP_					0	0	0		ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	MULTI-MSMS	HCT116MG_D190212_S4	4	469.2530517578125	2	469.2531	936.491647	0.18596	8.7261E-05	0.034651	1.626E-05	0.22061	0.00010352	469.2530976000081	36.503	0.41259	36.117	35.918	36.331	-0.38558					11	7	2	0	0	0	0.24895	1	13366	13366		36.127	1.9397	1	2866400			6258	2036	3391	3422	6115	6115					0.0208607866057946
DKVPEPGVP	9	Unmodified	_DKVPEPGVP_					0	0	0		ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	469.2531	936.491647	0.18596	8.7261E-05	0.034651	1.626E-05	0.22061	0.00010352	469.2530976000081	36.503	0.41259	36.117	35.918	36.331	-0.38558	-0.00065351	-0.00013668	NaN	36.127	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2866400			6259	2036	3391	3422							0.0208607866057946
DKVQQKERY	9	Unmodified	_DKVQQKERY_					0	0	0			REV__ENSG00000113460|ENST00000336767|BRIX1	REV__ENSG00000113460|ENST00000336767|BRIX1	MSMS	HCT116MG_D190212_S2	2	398.5470275878906	3	398.547288	1192.62004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.582	1	20.203	19.703	20.703	-0.37949								0	0	0	0.76679	1	7200	7200		12.175	2.0242	1		+		6260	11484	3392	3423	6116	6116					0.03143013903672909
DKWKKKTTLLY	11	Unmodified	_DKWKKKTTLLY_					0	0	0			REV__SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	REV__SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	712.4215087890625	2	712.41902	1422.82349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.239	1	20.239	19.739	20.739	0								0	0	0	0.95113	1	7063	7063		5.7319	2.1354	1		+		6261	10689	3393	3424	6117	6117					0.12898738625290207
DKWWYRVIIHR	11	Unmodified	_DKWWYRVIIHR_					0	0	0		nc|ENSG00000162782|Q8NAT2|TDRD5;ENSG00000162782|ENST00000444136|TDRD5	nc|ENSG00000162782|Q8NAT2|TDRD5	nc|ENSG00000162782|Q8NAT2|TDRD5	MSMS	HCT116MG_D190212_S2	2	786.4345092773438	2	786.433327	1570.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.596	1	38.511	38.011	39.011	-0.084618								0	0	0	0.95686	1	14502	14502		2.7352	2.4282	1				6262	4557	3394	3425	6118	6118					0.08950901045045612
DKYAASENIFN	11	Unmodified	_DKYAASENIFN_					0	0	0		PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant;PPP4R1|p.K793Sfs*34|1|0.1|ENSG00000154845|chr18:9550311-9550312|TT/-|frameshift_variant;nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000577779.1_1_18:9594966-9614482:-|nuORF;ENST00000580283.1_1_18:9594966-9614260:-|nuORF	PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant	PPP4R1|p.L448Rfs*6|1|0.28|ENSG00000154845|chr18:9570387-9570388|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	636.2969360351562	2	636.298767	1270.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.04	1	18.853	18.353	19.353	-0.18674								0	0	0	0.94385	1	6431	6431		9.544	3.8121	1				6263	4233	3395	3426	6119	6119					-0.041487024327807376
DKYACWYQQ	9	Unmodified	_DKYACWYQQ_					0	0	0		nc|ENSG00000211673|P01715|IGLV3-1	nc|ENSG00000211673|P01715|IGLV3-1	nc|ENSG00000211673|P01715|IGLV3-1	MULTI-MSMS	HCT116MG_D190212_S3	3	402.50885009765625	3	402.174574	1203.50189	-0.085536	-3.44E-05	-1.5232	-0.0006126	-1.6088	-0.000647	402.5086471547843	20.156	0.20823	20.205	20.103	20.311	0.048109					8	3	3	0	0	0	0.66792	1	6982	6982		4.5289	0	1	2152700			6264	9622	3396	3427	6120	6120					-0.09171681676525623
DKYKYRRKMRE	11	Unmodified	_DKYKYRRKMRE_					0	0	0		tr|U7T059|U7T059_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	tr|U7T059|U7T059_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	tr|U7T059|U7T059_FUSNUtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmGPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	786.9253540039062	2	786.925009	1571.83546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.193	1	26.193	25.693	26.693	0								0	0	0	0.96003	1	9454	9454		1.0715	0.72083	1				6265	18543	3397	3428	6121	6121					0.07242032096769435
DKYSFFKS	8	Unmodified	_DKYSFFKS_					0	0	0			REV__nc|ENSG00000173852|Q2PZI1|DPY19L1	REV__nc|ENSG00000173852|Q2PZI1|DPY19L1	MSMS	HCT116MG_D190212_S1	1	511.2425842285156	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.343	1	18.343	17.843	18.843	0								0	0	0	0.84187	1	6299	6299		19.257	4.0085	1		+		6266	13458	3398	3429	6122	6122					-0.01777921339430577
DKYVKVLHQFP	11	Unmodified	_DKYVKVLHQFP_					0	0	0		nc|ENSG00000188171|Q68DY1-2|ZNF626;ZNF626|p.T498Wfs*8|1|0.06|ENSG00000188171|chr19:20624367-20624385|GTATGATTCTCTCATGTGT/-|frameshift_variant;ENSG00000188171|ENST00000601440|ZNF626	nc|ENSG00000188171|Q68DY1-2|ZNF626	nc|ENSG00000188171|Q68DY1-2|ZNF626	MSMS	HCT116MG_D190212_S2	2	687.3794555664062	2	687.382437	1372.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.415	1	20.036	19.536	20.536	-0.37949								0	0	0	0.94012	1	7135	7135		11.495	2.7493	1				6267	5972	3399	3430	6123	6123					0.07885609902655233
DKYYQTKFSN	10	Unmodified	_DKYYQTKFSN_					0	0	0			REV__tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	REV__tr|U7SV00|U7SV00_FUSNUCardiolipinsynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01072PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	647.30712890625	2	647.309135	1292.60372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.001	1	26.001	25.501	26.501	0								0	0	0	0.93202	1	9377	9377		8.7454	1.1365	1		+		6268	17837	3400	3431	6124	6124					-0.03088112053092118
DLAAQPDLSQ	10	Unmodified	_DLAAQPDLSQ_					0	0	0		ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant;ENSG00000162714|ENST00000682384|ZNF496;nc|ENSG00000162714|Q96IT1-2|ZNF496	ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant	ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1057.5172119140625	1	1057.51603	1056.50875	0.67219	0.00071085	-0.38714	-0.00040941	0.28505	0.00030144	1057.516048031941	25.009	0.25933	24.633	24.452	24.712	-0.37521					6	4	2	0	0	0	0.032631	1	9003	9003		100.09	0.33544	1	13096000			6269	4546	3401	3432	6125	6125					-0.017240455242927055
DLAGTSIFTVY	11	Unmodified	_DLAGTSIFTVY_					0	0	0		ENST00000497170.5_1_13:101795259-101997694:-|nuORF	ENST00000497170.5_1_13:101795259-101997694:-|nuORF	ENST00000497170.5_1_13:101795259-101997694:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	593.9910888671875	2	593.803154	1185.59175	0.65781	0.00039061	-0.42708	-0.0002536	0.23073	0.00013701	593.8033772596393	31.093	0.15475	30.826	30.716	30.87	-0.26704					4	2	2	0	0	0	0.32753	1	11457	11457		27.629	0	1	5424600			6270	8398	3402	3433	6126	6126					0.006382712037066085
DLAGVKRVRR	10	Unmodified	_DLAGVKRVRR_					0	0	0			REV__nc|ENSG00000168418|Q8TDN1-2|KCNG4	REV__nc|ENSG00000168418|Q8TDN1-2|KCNG4	MSMS	HCT116MG_D190212_S2	2	585.1845092773438	2	585.364913	1168.71527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.555	1	53.366	52.866	53.866	-0.1894								0	0	0	0.94107	1	20598	20598		6.7232	0.51738	1		+		6271	13199	3403	3434	6127	6127					0.1376641188535359
DLAKILSEM	9	Unmodified	_DLAKILSEM_					0	0	0		CON__P19001	CON__P19001	CON__P19001	MULTI-MSMS	HCT116MG_D190212_S1	1	1019.544921875	1	1019.54416	1018.53688	0.93194	0.00095016	0.76041	0.00077527	1.6924	0.0017254	1019.5445498483507	55.427	0.20442	55.427	55.298	55.503	0					5	3	2	0	0	0	0.55223	1	21314	21314		13.906	3.8321	1	27967000		+	6272	563	3404	3435	6128	6128					0.028355611314509588
DLAPGFLEA	9	Unmodified	_DLAPGFLEA_					0	0	0		nc|ENSG00000123989|Q8IZ52-2|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF	nc|ENSG00000123989|Q8IZ52-2|CHPF	nc|ENSG00000123989|Q8IZ52-2|CHPF	MULTI-MSMS	HCT116MG_D190212_S2	2	932.4765625	1	932.472374	931.465098	0.82882	0.00077285	-0.5371	-0.00050083	0.29172	0.00027202	932.4718031709302	54.393	0.20459	54.204	54.048	54.252	-0.1894					5	3	2	0	0	0	0.43775	1	20881	20881		20.454	0	1	9703100			6273	2822	3405	3436	6129	6129					-0.0033761023078113794
DLAPGFLEA	9	Unmodified	_DLAPGFLEA_					0	0	0		nc|ENSG00000123989|Q8IZ52-2|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF	nc|ENSG00000123989|Q8IZ52-2|CHPF	nc|ENSG00000123989|Q8IZ52-2|CHPF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	932.472374	931.465098	0.82882	0.00077285	-0.5371	-0.00050083	0.29172	0.00027202	932.4718031709302	54.393	0.20459	54.204	54.048	54.252	-0.1894	-0.032399	-0.00039627	NaN	20.454	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9703100			6274	2822	3405	3436							-0.0033761023078113794
DLAPGFLEA	9	Unmodified	_DLAPGFLEA_					0	0	0		nc|ENSG00000123989|Q8IZ52-2|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;ENSG00000123989|ENST00000243776|CHPF	nc|ENSG00000123989|Q8IZ52-2|CHPF	nc|ENSG00000123989|Q8IZ52-2|CHPF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	932.472374	931.465098	0.79252	0.000739	0.11172	0.00010418	0.90424	0.00084318	932.4729975705704	54.565	0.15686	54.269	54.138	54.295	-0.29587	0.032399	0.00020874	NaN	20.454	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1663800			6275	2822	3405	3436							-0.0033761023078113794
DLATVYVDVLK	11	Unmodified	_DLATVYVDVLK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S1	1	618.3473510742188	2	618.347729	1234.6809	0.65373	0.00040423	-0.2897	-0.00017913	0.36403	0.0002251	618.3474101730046	54.917	0.20372	54.917	54.79	54.994	0					7	3	3	0	0	0	0.032082	1	21083	21083		101.54	51.989	1	123370000			6276	2597	3406	3437	6130	6130					0.07295106163223863
DLATVYVDVLK	11	Unmodified	_DLATVYVDVLK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S2	2	618.3475341796875	2	618.347729	1234.6809	0.41316	0.00025548	0.51537	0.00031868	0.92853	0.00057415	618.3477358164553	55.08	0.40649	54.892	54.765	55.171	-0.18797					12	7	3	0	0	0	0.11976	1	21226	21226		85.764	36.21	1	87863000			6277	2597	3406	3437	6131	6131					0.07295106163223863
DLATVYVDVLK	11	Unmodified	_DLATVYVDVLK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	618.34814453125	2	618.347729	1234.6809	0.41752	0.00025817	0.069936	4.3245E-05	0.48746	0.00030142	618.3477496458506	55.14	0.90145	54.848	54.613	55.514	-0.2918					30	16	2	0	0	0	0.0060991	1	20913	20913		139.38	81.656	1	87903000			6278	2597	3406	3437	6132	6132					0.07295106163223863
DLATVYVDVLK	11	Unmodified	_DLATVYVDVLK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	HCT116MG_D190212_S4	4	618.3478393554688	2	618.347729	1234.6809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.172	1	54.854	54.354	55.354	-0.31774								0	0	0	4.483E-05	1	20650	20650		118.21	60.487	1				6279	2597	3406	3437	6133	6133					0.07295106163223863
DLCCTCSP	8	Unmodified	_DLCCTCSP_					0	0	0			REV__ENST00000471842.1_1_6:31540079-31540666:+|nuORF	REV__ENST00000471842.1_1_6:31540079-31540666:+|nuORF	MSMS	HCT116MG_D190212_S1	1	421.1498107910156	2	421.148074	840.281596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.767	1	20.767	20.267	21.267	0								0	0	0	0.8837	1	7276	7276		5.7604	2.8712	1		+		6280	15875	3407	3438	6134	6134					-0.14493366599936053
DLDAELAGL	9	Unmodified	_DLDAELAGL_					0	0	0		sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1;sp|P16793|UL52_HCMVAPackagingproteinUL32homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL52PE=3SV=1	sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	916.4617309570312	1	916.462204	915.454927	0.80726	0.00073982	0.19573	0.00017938	1.003	0.0009192	916.4622869684306	47.741	0.21188	47.372	47.256	47.468	-0.36907					10	5	2	0	0	0	0.14972	1	17659	17659		48.346	0	1	5211700			6281	18215	3408	3439	6135	6135					-0.006182179560028089
DLDAIKLFV	9	Unmodified	_DLDAIKLFV_					0	0	0		nc|ENSG00000161082|Q8N6W0-2|CELF5;ENSG00000161082|ENST00000292672|CELF5	nc|ENSG00000161082|Q8N6W0-2|CELF5	nc|ENSG00000161082|Q8N6W0-2|CELF5	MULTI-MSMS	HCT116MG_D190212_S2	2	517.3001708984375	2	517.30005	1032.58555	0.2009	0.00010392	-0.027349	-1.4147E-05	0.17355	8.9777E-05	517.2999883936176	49.128	0.15169	48.974	48.884	49.036	-0.15405					4	2	2	0	0	0	0.084109	1	18815	18815		61.357	13.012	1	44199000			6282	4481	3409	3440	6136	6136					0.07055797762859584
DLDEDNFLEE	10	Unmodified	_DLDEDNFLEE_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MSMS	HCT116MG_D190212_S1	1	619.7574462890625	2	619.756598	1237.49864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.029	1	38.029	37.529	38.529	0								0	0	0	0.94107	1	14226	14226		6.7232	0	1		+		6283	11027	3410	3441	6137	6137					-0.11060698040182615
DLDEDYSY	8	Unmodified	_DLDEDYSY_					0	0	0			REV__NR5A1|p.V128Gfs*21|1|0.33|ENSG00000136931|chr9:124500577-124500578|-/C|frameshift_variant	REV__NR5A1|p.V128Gfs*21|1|0.33|ENSG00000136931|chr9:124500577-124500578|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.6936340332031	2	510.195645	1018.37674	0.41432	0.00021138	0.66315	0.00033834	1.0775	0.00054972	510.19635475892534	31.714	0.31285	31.714	31.544	31.857	0					11	5	3	0	0	0	0.32538	1	11678	11678		5.2307	0	1	6118400	+		6284	12153	3411	3442	6138	6138					-0.1317169533190281
DLDGEDWLP	9	Unmodified	_DLDGEDWLP_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;PARP10|p.N936Qfs*6|1|0.45|ENSG00000178685|chr8:143977756-143977757|-/G|frameshift_variant;ENST00000526007.5_1_8:145051654-145057989:-|nuORF	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MSMS	HCT116MG_D190212_S4	4	530.2344970703125	2	530.235104	1058.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.6	1	53.265	52.765	53.765	-0.33473								0	0	0	0.76818	1	20017	20017		7.2892	2.96	1				6285	5509	3412	3443	6139	6139					-0.0712342330696174
DLDHSIGTQY	10	Unmodified	_DLDHSIGTQY_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	HCT116MG_D190212_S1	1	574.7653198242188	2	574.76456	1147.51457	0.49611	0.00028515	0.30512	0.00017537	0.80123	0.00046052	574.7646847818232	34.958	0.3118	34.958	34.753	35.064	0					11	5	3	0	0	0	0.027291	1	12997	12997		107.19	63.329	1	12862000			6286	1579	3413	3444	6140	6140					-0.053289470125946536
DLDHSIGTQY	10	Unmodified	_DLDHSIGTQY_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	HCT116MG_D190212_S2	2	574.7647705078125	2	574.76456	1147.51457	0.42981	0.00024704	0.31601	0.00018163	0.74582	0.00042867	574.7646192996311	34.997	0.41449	34.839	34.657	35.072	-0.15834					16	7	3	0	0	0	0.037995	2	13040	13040;13073		96.111	54.271	1	95115000			6287	1579	3413	3444	6141;6142	6141					-0.053289470125946536
DLDHSIGTQY	10	Unmodified	_DLDHSIGTQY_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	HCT116MG_D190212_S3	3	574.7649536132812	2	574.76456	1147.51457	0.6429	0.00036951	-0.027536	-1.5827E-05	0.61536	0.00035369	574.7644389028661	35.23	0.31105	34.931	34.75	35.061	-0.29922					13	5	3	0	0	0	0.029414	1	12981	12981		103.35	59.495	1	41743000			6288	1579	3413	3444	6143	6143					-0.053289470125946536
DLDHSIGTQY	10	Unmodified	_DLDHSIGTQY_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.G159Vfs*126|1|0.32|ENSG00000092203|chr14:21488743-21488743|G/-|frameshift_variant;TOX4|p.Q486Hfs*16|1|0.55|ENSG00000092203|chr14:21493073-21493073|A/-|frameshift_variant;TOX4|p.T456Dfs*60|1|0.38|ENSG00000092203|chr14:21492975-21492976|-/C|frameshift_variant	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MSMS	HCT116MG_D190212_S4	4	574.7647705078125	2	574.76456	1147.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.278	1	34.891	34.391	35.391	-0.38606								0	0	0	0.052755	1	12914	12914		96.111	58.137	1				6289	1579	3413	3444	6144	6144					-0.053289470125946536
DLDIPMSV	8	Unmodified	_DLDIPMSV_					0	0	0		ENSG00000153560|ENST00000283629|UBP1;nc|ENSG00000153560|Q9NZI7-4|UBP1;UBP1|p.I157M|1|0.21|ENSG00000153560|chr3:33411665-33411665|T/C|missense_variant	ENSG00000153560|ENST00000283629|UBP1	ENSG00000153560|ENST00000283629|UBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	890.4359130859375	1	889.433546	888.426269	0.77914	0.000693	-0.45237	-0.00040235	0.32678	0.00029065	889.4335354255746	53.673	0.31017	53.483	53.325	53.636	-0.1894					9	5	2	0	0	0	0.55794	1	20670	20670		36.044	0	1	14828000			6290	4194	3414	3445	6145	6145					-0.02240658856783284
DLDLWDFKS	9	Unmodified	_DLDLWDFKS_					0	0	0			REV__nc|ENSG00000011405|O00443-2|PIK3C2A	REV__nc|ENSG00000011405|O00443-2|PIK3C2A	MSMS	HCT116MG_D190212_S2	2	569.77294921875	2	569.774396	1137.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.416	1	33.223	32.723	33.723	-0.19297								0	0	0	0.05792	1	12398	12398		68.081	0	1		+		6291	10524	3415	3446	6146	6146					-0.029025710018686368
DLDPSAPSTAP	11	Unmodified	_DLDPSAPSTAP_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MSMS	HCT116MG_D190212_S4	4	535.7567138671875	2	535.753661	1069.49277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.881	1	15.717	15.217	16.217	-0.16364								0	0	0	0.9387	1	5155	5155		12.241	0.60036	1		+		6292	10661	3416	3447	6147	6147					-0.039197517612137744
DLDRIAGQV	9	Unmodified	_DLDRIAGQV_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	HCT116MG_D190212_S1	1	494.2489318847656	2	493.766906	985.519259	0.49824	0.00024602	0.051475	2.5416E-05	0.54972	0.00027143	493.7669150709207	31.05	0.31247	31.05	30.867	31.18	0					8	5	2	0	0	0	0.41514	1	11366	11366		21.747	0	1	8961200			6293	2005	3417	3448	6148	6148					0.02591981920818398
DLDSQDLLYV	10	Unmodified	_DLDSQDLLYV_					0	0	0			REV__ENST00000514579.1_1_5:75950824-75955864:+|nuORF	REV__ENST00000514579.1_1_5:75950824-75955864:+|nuORF	MSMS	HCT116MG_D190212_S3	3	394.19720458984375	3	394.195921	1179.56593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.307	1	38.005	37.505	38.505	-0.30137								0	0	0	0.94149	1	14186	14186		6.6304	0.84694	1		+		6294	12454	3418	3449	6149	6149					-0.016666230385681047
DLDSRVLYY	9	Unmodified	_DLDSRVLYY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	572.2886962890625	2	572.287671	1142.56079	0.34424	0.000197	0.65135	0.00037276	0.99559	0.00056976	572.2877755258387	46.222	0.41225	46.121	45.863	46.275	-0.1014					18	7	4	0	0	0	0.012596	1	17592	17592		106.94	50.763	1	108750000			6295	3106	3419	3450	6150	6150					-0.004788821105421448
DLDSRVLYY	9	Unmodified	_DLDSRVLYY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	572.2879638671875	2	572.287671	1142.56079	0.7092	0.00040587	-0.16981	-9.7181E-05	0.53939	0.00030868	572.2875039452291	46.463	0.60171	46.151	45.942	46.543	-0.31237					28	11	4	0	0	0	0.012596	2	17407	17358;17407		106.94	50.763	1	77717000			6296	3106	3419	3450	6151;6152	6152					-0.004788821105421448
DLDSRVLYY	9	Unmodified	_DLDSRVLYY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S4	4	572.2877197265625	2	572.287671	1142.56079	0.66986	0.00038335	-0.26888	-0.00015387	0.40098	0.00022948	572.2874568275059	46.502	0.40632	46.13	45.974	46.38	-0.37134					22	9	3	0	0	0	0.011082	2	17151	17143;17151		110.67	54.498	1	37115000			6297	3106	3419	3450	6153;6154	6154					-0.004788821105421448
DLDSRVLYY	9	Unmodified	_DLDSRVLYY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	572.287671	1142.56079	0.47926	0.00027428	1.038	0.00059403	1.5173	0.00086831	572.789871433481	46.139	0.25848	46.139	46.027	46.285	0	0.0036266	0.0012762	NaN	110.67	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26678000			6298	3106	3419	3450							-0.004788821105421448
DLEDFYYKEFL	11	Unmodified	_DLEDFYYKEFL_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MSMS	HCT116MG_D190212_S2	2	741.345703125	2	741.345383	1480.67621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.162	1	50.983	50.483	51.483	-0.17868								0	0	0	0.95113	1	19623	19623		5.7319	0	1				6299	1613	3420	3451	6155	6155					-0.04489822770210594
DLEELDETEF	10	Unmodified	_DLEELDETEF_					0	0	0		USP3|p.L382F|1|0.31|ENSG00000140455|chr15:63588354-63588354|A/C|missense_variant	USP3|p.L382F|1|0.31|ENSG00000140455|chr15:63588354-63588354|A/C|missense_variant	USP3|p.L382F|1|0.31|ENSG00000140455|chr15:63588354-63588354|A/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	620.2655639648438	2	620.266798	1238.51904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.284	1	45.284	44.784	45.784	0								0	0	0	0.92607	1	17153	17153		10.074	0	1				6300	18685	3421	3452	6156	6156					-0.09067527380398133
DLEHTPEL	8	Unmodified	_DLEHTPEL_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	MSMS	HCT116MG_D190212_S1	1	477.2304382324219	2	477.232364	952.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.242	1	57.242	56.742	57.742	0								0	0	0	0.8837	1	22023	22023		5.7604	2.7652	1		+		6301	13180	3422	3453	6157	6157					-0.027951020987757147
DLEKEAPWEY	10	Unmodified	_DLEKEAPWEY_					0	0	0		ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	MULTI-MSMS	HCT116MG_D190212_S2	2	640.2960815429688	2	640.295693	1278.57683	0.53603	0.00034322	-0.36572	-0.00023417	0.17031	0.00010905	640.2955803228126	46.377	0.41257	46.265	46.059	46.471	-0.11121					17	7	3	0	0	0	0.025008	1	17675	17675		111.31	80.672	1	26652000			6302	2876	3423	3454	6158	6158					-0.05131220664270586
DLEKEAPWEY	10	Unmodified	_DLEKEAPWEY_					0	0	0		ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	MSMS	HCT116MG_D190212_S3	3	640.2960815429688	2	640.295693	1278.57683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.714	1	46.4	45.9	46.9	-0.31405								0	0	0	0.85631	1	17523	17523		21.537	9.2963	1				6303	2876	3423	3454	6159	6159					-0.05131220664270586
DLEKEAPWEY	10	Unmodified	_DLEKEAPWEY_					0	0	0		ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	MULTI-MATCH	HCT116MG_D190212_S1	1		2	640.295693	1278.57683	0.82162	0.00052608	0.11169	7.1513E-05	0.9333	0.00059759	640.2958061645307	46.311	0.15509	46.311	46.182	46.337	0	0.045284	0.00028767	NaN	111.31	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7498500			6304	2876	3423	3454							-0.05131220664270586
DLEKEAPWEY	10	Unmodified	_DLEKEAPWEY_					0	0	0		ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	MULTI-MATCH	HCT116MG_D190212_S3	3		2	640.295693	1278.57683	0.7363	0.00047145	-0.58196	-0.00037263	0.15433	9.882E-05	640.2955185797483	46.534	0.26048	46.221	46.126	46.387	-0.31238	-0.044585	-0.00060061	NaN	111.31	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2770600			6305	2876	3423	3454							-0.05131220664270586
DLELLVRRL	9	Unmodified	_DLELLVRRL_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	HCT116MG_D190212_S1	1	1126.696044921875	1	1126.69427	1125.68699	0.50929	0.00057381	0.76981	0.00086734	1.2791	0.0014411	1126.6949644939143	60.592	0.3626	60.592	60.335	60.698	0					8	6	2	0	0	0	0.71898	1	23379	23379		3.9444	0.3479	1	14599000			6306	6487	3424	3455	6160	6160					0.12917669185435443
DLESFEVV	8	Unmodified	_DLESFEVV_					0	0	0			REV__ENSG00000146909|ENST00000275820|NOM1	REV__ENSG00000146909|ENST00000275820|NOM1	MULTI-MSMS	HCT116MG_D190212_S3	3	937.449951171875	1	937.451305	936.444028	0.62997	0.00059057	-0.38833	-0.00036404	0.24164	0.00022653	937.4506463657358	51.705	0.36658	51.395	51.174	51.541	-0.30993					10	6	2	0	0	0	0.32897	1	19530	19530		56.541	6.8724	1	3709600	+		6307	12498	3425	3456	6161	6161					-0.026736203302675676
DLEWESSYNSV	11	Unmodified	_DLEWESSYNSV_					0	0	0			REV__ENST00000485662.1_1_1:79126346-79129493:+|nuORF	REV__ENST00000485662.1_1_1:79126346-79129493:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	664.7864990234375	2	664.785689	1327.55683	0.70696	0.00046997	0.10117	6.7254E-05	0.80812	0.00053723	664.7857078907042	19.921	0.36607	19.921	19.756	20.123	0					11	6	2	0	0	0	0.73696	1	6947	6947		8.1555	4.559	1	6095400	+		6308	12202	3426	3457	6162	6162					-0.09385016394890044
DLEYFQRRYF	10	Unmodified	_DLEYFQRRYF_					0	0	0		ENST00000574357.1_1_17:7761431-7761827:+|nuORF;nc|ENSG00000182224|Q6P9G0-2|CYB5D1;ENSG00000182224|ENST00000332439|CYB5D1	ENST00000574357.1_1_17:7761431-7761827:+|nuORF	ENST00000574357.1_1_17:7761431-7761827:+|nuORF	MSMS	HCT116MG_D190212_S3	3	718.8541259765625	2	718.851501	1435.68845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.403	1	49.087	48.587	49.587	-0.31596								0	0	0	0.95507	1	18603	18603		3.5965	0.31518	1				6309	5663	3427	3458	6163	6163					-0.011967415164690465
DLFEEKITH	9	Unmodified	_DLFEEKITH_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	HCT116MG_D190212_S1	1	566.2881469726562	2	566.287671	1130.56079	0.57139	0.00032357	-0.17396	-9.8514E-05	0.39742	0.00022506	566.2877193177621	37.638	0.20886	37.638	37.55	37.759	0					9	3	4	0	0	0	0.019537	1	14095	14095		96.936	44.667	1	7283800			6310	2415	3428	3459	6164	6164					0.0007311788947390596
DLFRCIYKL	9	Unmodified	_DLFRCIYKL_					0	0	0			REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	MSMS	HCT116MG_D190212_S4	4	585.8218383789062	2	585.820627	1169.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.097	1	53.768	53.268	54.268	-0.32923								0	0	0	0.76902	1	20217	20217		4.3292	0	1		+		6311	12231	3429	3460	6165	6165					0.048672355306962345
DLFTKKYKLI	10	Unmodified	_DLFTKKYKLI_					0	0	0		DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant;DNAH11|p.A2559Sfs*4|1|0.42|ENSG00000105877|chr7:21738723-21738724|-/A|frameshift_variant;DNAH11|p.L3180Sfs*6|1|0.05|ENSG00000105877|chr7:21784481-21784482|-/CAGA|frameshift_variant;DNAH11|p.E3097Nfs*4|1|0.21|ENSG00000105877|chr7:21773946-21773946|A/-|frameshift_variant;DNAH11|p.N3090Kfs*2|1|0.09|ENSG00000105877|chr7:21773928-21773929|-/A|frameshift_variant;DNAH11|p.S2374Qfs*2|1|0.14|ENSG00000105877|chr7:21717910-21717911|-/C|frameshift_variant;DNAH11|p.W2255Mfs*9|1|0.04|ENSG00000105877|chr7:21710627-21710628|-/A|frameshift_variant;DNAH11|p.N2201Kfs*6|1|0.04|ENSG00000105877|chr7:21707754-21707755|-/AGTAAAAGATTTC|frameshift_variant;DNAH11|p.C1849Sfs*8|1|0.05|ENSG00000105877|chr7:21683868-21683869|-/CTAAAATTCTCATAAATAG|frameshift_variant;DNAH11|p.K1250Nfs*43|1|0.63|ENSG00000105877|chr7:21606522-21606522|A/-|frameshift_variant;DNAH11|p.C1251Mfs*5|1|0.41|ENSG00000105877|chr7:21606521-21606522|-/A|frameshift_variant;DNAH11|p.Q945Kfs*4|1|0.32|ENSG00000105877|chr7:21599946-21599946|T/-|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	634.32861328125	2	634.884281	1267.75401	0.56499	0.0003587	4.16	0.0026411	4.725	0.0029998	635.3865505015689	56.851	0.58069	56.672	56.263	56.844	-0.17904					14	10	2	0	0	0	0.31123	1	21903	21903		0.35063	0.043601	1	2978000			6312	698	3430	3461	6166	6166					0.13084279676513688
DLGAEHLAGH	10	Unmodified	_DLGAEHLAGH_					0	0	0		CCNG2|p.F70Lfs*22|1|0.22|ENSG00000138764|chr4:77159433-77159433|T/-|frameshift_variant;CCNG2|p.I144Nfs*13|1|0.14|ENSG00000138764|chr4:77160874-77160875|-/ACAAGAGGCTTCT|frameshift_variant;nc|ENSG00000138764|Q16589-2|CCNG2;ENSG00000138764|ENST00000316355|CCNG2;ENST00000497512.5_1_4:78078410-78106259:+|nuORF	CCNG2|p.F70Lfs*22|1|0.22|ENSG00000138764|chr4:77159433-77159433|T/-|frameshift_variant	CCNG2|p.F70Lfs*22|1|0.22|ENSG00000138764|chr4:77159433-77159433|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	510.7704162597656	2	510.24888	1018.48321	-0.034126	-1.7413E-05	0.090964	4.6414E-05	0.056838	2.9002E-05	510.2489880922991	17.874	0.6244	17.955	17.69	18.314	0.081358					14	11	2	0	0	0	0.27462	1	6117	6117		24.021	2.2739	1	1811900			6313	360	3431	3462	6167	6167					-0.025294752560398592
DLGALAGY	8	Unmodified	_DLGALAGY_					0	0	0		nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	MULTI-MSMS	HCT116MG_D190212_S2	2	779.3954467773438	1	779.393396	778.386119	0.97211	0.00075766	0.89893	0.00070062	1.871	0.0014583	779.3943486822917	40.201	0.2598	40.128	39.998	40.258	-0.072838					6	4	2	0	0	0	0.40466	1	15182	15182		49.669	3.9189	1	24110000			6314	2140	3432	3463	6168	6168					-0.011938374650412698
DLGAQDAPA	9	Unmodified	_DLGAQDAPA_					0	0	0		ENST00000485456.5_1_9:140007511-140008978:-|nuORF;DPP7|p.R405Sfs*55|1|0.2|ENSG00000176978|chr9:137111749-137111750|TG/-|frameshift_variant;ENSG00000176978|ENST00000371579|DPP7	ENST00000485456.5_1_9:140007511-140008978:-|nuORF	ENST00000485456.5_1_9:140007511-140008978:-|nuORF	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	2	429.203607	856.392661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.721	1	26.42	25.92	26.92	-0.30087								0	0	0	0.76694	1	9532	9532		11.64	1.5664	1				6315	728	3433	3464	6169	6169					-0.04127944304332232
DLGEENFK	8	Unmodified	_DLGEENFK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	476.2251281738281	2	476.224539	950.434526	0.27516	0.00013104	0.3182	0.00015153	0.59336	0.00028257	476.2245837217598	30.581	0.46729	30.581	30.244	30.711	0					12	8	2	0	0	0	0.21275	1	11209	11209		71.134	21.201	1	4182700		+	6316	554	3434	3465	6170	6170					-0.042673886158013374
DLGEYDFRCY	10	Unmodified	_DLGEYDFRCY_					0	0	0			REV__ENSG00000154330|ENST00000396396|PGM5	REV__ENSG00000154330|ENST00000396396|PGM5	MSMS	HCT116MG_D190212_S4	4	640.7687377929688	2	640.766245	1279.51794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.472	1	42.096	41.596	42.596	-0.37565								0	0	0	0.93854	1	15611	15611		7.2892	1.9923	1		+		6317	12678	3435	3466	6171	6171					-0.11064020230242022
DLGGRDSKATD	11	Unmodified	_DLGGRDSKATD_					0	0	0			REV__TTLL2|p.A439T|1|0.14|ENSG00000120440|chr6:167341215-167341215|G/A|missense_variant	REV__TTLL2|p.A439T|1|0.14|ENSG00000120440|chr6:167341215-167341215|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	567.7732543945312	2	567.772916	1133.53128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.359	1	19.172	18.672	19.672	-0.18674								0	0	0	0.89672	1	6560	6560		20.415	1.0526	1		+		6318	18027	3436	3467	6172	6172					-0.030144461266672806
DLGKARDYYT	10	Unmodified	_DLGKARDYYT_					0	0	0		ENSG00000162377|ENST00000371538|COA7	ENSG00000162377|ENST00000371538|COA7	ENSG00000162377|ENST00000371538|COA7	MULTI-MSMS	HCT116MG_D190212_S4	4	601.3557739257812	2	601.296027	1200.5775	1.1963	0.00071935	-0.6699	-0.00040281	0.52642	0.00031653	601.2955499130658	32.27	1.3954	31.893	31.225	32.62	-0.37675					40	26	2	0	0	0	0.86862	1	12026	12026		6.2058	0.47393	1	7553600			6319	4514	3437	3468	6173	6173					-0.014763812245973895
DLGKKIRRNH	10	Unmodified	_DLGKKIRRNH_					0	0	0		NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	NPAT|p.S1040Ifs*18|2|0.28|ENSG00000149308|chr11:108161968-108161969|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	618.8681030273438	2	618.86782	1235.72109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.5	1	22.115	21.615	22.615	-0.3852								0	0	0	0.92607	1	7974	7974		10.074	1.3285	1				6320	9703	3438	3469	6174	6174					0.1126551039703827
DLGKSRQGSR	10	Unmodified	_DLGKSRQGSR_					0	0	0		ENST00000559111.1_1_15:99797871-99798159:+|nuORF	ENST00000559111.1_1_15:99797871-99798159:+|nuORF	ENST00000559111.1_1_15:99797871-99798159:+|nuORF	MSMS	HCT116MG_D190212_S2	2	552.7838745117188	2	552.299436	1102.58432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.481	1	27.139	26.639	27.639	-0.34201								0	0	0	0.92573	1	9984	9984		10.151	1.4052	1				6321	8806	3439	3470	6175	6175					0.03712976446649918
DLGKVLAL	8	Unmodified	_DLGKVLAL_					0	0	0		ENSG00000100253|ENST00000216075|MIOX	ENSG00000100253|ENST00000216075|MIOX	ENSG00000100253|ENST00000216075|MIOX	MSMS	HCT116MG_D190212_S4	4	414.76165771484375	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.677	1	54.354	53.854	54.854	-0.32349								0	0	0	0.8837	1	20451	20451		2.5775	0	1				6322	1682	3440	3471	6176	6176					0.09099874391165486
DLGNPNTAPP	10	Unmodified	_DLGNPNTAPP_					0	0	0		ENSG00000111752|ENST00000544916|PHC1	ENSG00000111752|ENST00000544916|PHC1	ENSG00000111752|ENST00000544916|PHC1	MULTI-SECPEP	HCT116MG_D190212_S3	3	497.4563293457031	2	498.243264	994.471974	0.31354	0.00015622	0.51955	0.00025886	0.83309	0.00041508	498.24348562575847	24.415	0.72881	24.332	23.873	24.601	-0.083694					18	13	2	0	0	0	0.22544	1	8619	8619		22.736	0	1	1942800			6323	2314	3441	3472	6177	6177					-0.02548297350199391
DLGPLENDQLP	11	Unmodified	_DLGPLENDQLP_					0	0	0			REV__ENSG00000266524|ENST00000580279|GDF10	REV__ENSG00000266524|ENST00000580279|GDF10	MSMS	HCT116MG_D190212_S3	3	605.7882690429688	2	605.801143	1209.58773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.892	1	26.725	26.225	27.225	-0.16671								0	0	0	0.93552	1	9668	9668		13.906	0	1		+		6324	14431	3442	3473	6178	6178					-0.008678182899984677
DLGTDEKQQEY	11	Unmodified	_DLGTDEKQQEY_					0	0	0			REV__ENST00000522785.1_1_8:42176239-42177326:+|nuORF	REV__ENST00000522785.1_1_8:42176239-42177326:+|nuORF	MSMS	HCT116MG_D190212_S1	1	663.2981567382812	2	663.296421	1324.57829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.33	1	41.33	40.83	41.83	0								0	0	0	0.94416	1	15559	15559		9.3831	2.0939	1		+		6325	16251	3443	3474	6179	6179					-0.07101631366163019
DLGVPLGLVWG	11	Unmodified	_DLGVPLGLVWG_					0	0	0		ENST00000367279.8_1_1:202117499-202117730:-|nuORF	ENST00000367279.8_1_1:202117499-202117730:-|nuORF	ENST00000367279.8_1_1:202117499-202117730:-|nuORF	MSMS	HCT116MG_D190212_S4	4	563.318359375	2	563.318774	1124.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.017	1	38.637	38.137	39.137	-0.38055								0	0	0	0.95196	1	14321	14321		5.2969	1.3525	1				6326	7385	3444	3475	6180	6180					0.0656688902845417
DLHISNSHPL	10	Unmodified	_DLHISNSHPL_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-2|IRF3;ENST00000599680.1_1_19:50162907-50164763:-|nuORF;ENST00000597636.5_1_19:50162907-50164809:-|nuORF;nc|ENSG00000126456|Q14653-3|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MSMS	HCT116MG_D190212_S1	1	566.7889404296875	2	566.790912	1131.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.341	1	22.341	21.841	22.841	0								0	0	0	0.87399	1	7905	7905		19.257	5.7491	1				6327	2935	3445	3476	6181	6181					0.006750558408384677
DLHKQNIEY	9	Unmodified	_DLHKQNIEY_					0	0	0			REV__ENST00000528757.2_1_14:51382052-51382644:-|nuORF	REV__ENST00000528757.2_1_14:51382052-51382644:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	580.2971801757812	2	580.290745	1158.56694	0.39599	0.00022979	0.51337	0.0002979	0.90935	0.00052769	580.291273020215	26.829	0.47305	26.477	26.293	26.766	-0.35254					18	8	4	0	0	0	0.21635	1	9662	9662		25.399	0	1	324640000	+		6328	11092	3446	3477	6182	6182					-0.006003638790161858
DLIFTEML	8	Unmodified	_DLIFTEML_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MSMS	HCT116MG_D190212_S2	2	491.66778564453125	2	491.251711	980.48887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.492	1	35.349	34.849	35.849	-0.14245								0	0	0	0.8217	1	13241	13241		20.871	0	1		+		6329	12409	3447	3478	6183	6183					-0.002155127885885122
DLIKHRKW	8	Unmodified	_DLIKHRKW_					0	0	0		TAS2R1|p.M41Wfs*27|2|0.38|ENSG00000169777|chr5:9629912-9629912|T/-|frameshift_variant	TAS2R1|p.M41Wfs*27|2|0.38|ENSG00000169777|chr5:9629912-9629912|T/-|frameshift_variant	TAS2R1|p.M41Wfs*27|2|0.38|ENSG00000169777|chr5:9629912-9629912|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	365.1167907714844	3	365.885576	1094.6349	0.040365	1.4769E-05	-0.057314	-2.097E-05	-0.016949	-6.2013E-06	365.88556694588334	27.321	0.20778	26.968	26.818	27.026	-0.35254					5	3	2	0	0	0	0.33524	1	9941	9941		0.40072	0.40072	1	4125300			6330	18258	3448	3479	6184	6184					0.09136550562334378
DLIKHRKW	8	Unmodified	_DLIKHRKW_					0	0	0		TAS2R1|p.M41Wfs*27|2|0.38|ENSG00000169777|chr5:9629912-9629912|T/-|frameshift_variant	TAS2R1|p.M41Wfs*27|2|0.38|ENSG00000169777|chr5:9629912-9629912|T/-|frameshift_variant	TAS2R1|p.M41Wfs*27|2|0.38|ENSG00000169777|chr5:9629912-9629912|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	365.8466796875	3	365.885576	1094.6349	-0.019262	-7.0475E-06	-0.65761	-0.00024061	-0.67687	-0.00024766	366.2196077999246	26.817	0.15617	26.667	26.567	26.723	-0.14924					4	2	2	0	0	0	0.32902	1	9612	9612		1.6526	0	1	1189900			6331	18258	3448	3479	6185	6185					0.09136550562334378
DLITERGLV	9	Unmodified	_DLITERGLV_					0	0	0			REV__nc|ENSG00000128052|P35968-2|KDR	REV__nc|ENSG00000128052|P35968-2|KDR	MULTI-SECPEP	HCT116MG_D190212_S3	3	507.78265380859375	2	508.292756	1014.57096	0.19799	0.00010064	-0.67969	-0.00034548	-0.4817	-0.00024485	508.29243547572287	39.471	0.25565	39.169	39.034	39.29	-0.30137					10	4	3	0	0	0	0.2336	1	14608	14608		12.241	4.3305	1	29527000	+		6332	17122	3449	3480	6186	6186					0.06425725614724342
DLIVKYRKKKK	11	Unmodified	_DLIVKYRKKKK_					0	0	0		ENSG00000183044|ENST00000268251|ABAT;ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENSG00000183044|ENST00000268251|ABAT	ENSG00000183044|ENST00000268251|ABAT	MSMS	HCT116MG_D190212_S3	3	709.9625854492188	2	709.963929	1417.9133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.644	1	37.343	36.843	37.843	-0.30137								0	0	0	0.96141	1	13946	13946		0.35063	0.043601	1				6333	5699	3450	3481	6187	6187					0.22106413024448557
DLIVLPGKSH	10	Unmodified	_DLIVLPGKSH_					0	0	0		ENSG00000083093|ENST00000261584|PALB2;PALB2|p.L1006Ffs*5|1|0.3|ENSG00000083093|chr16:23621457-23621458|-/A|frameshift_variant;PALB2|p.E1010*|1|0.26|ENSG00000083093|chr16:23621448-23621449|-/G|frameshift_variant	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MSMS	HCT116MG_D190212_S1	1	360.2127990722656	3	360.213358	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.615	1	29.615	29.115	30.115	0								0	0	0	0.92845	1	10830	10830		9.544	0.16085	1				6334	1426	3451	3482	6188	6188					0.0825400488570267
DLIYLFIAWPV	11	Unmodified	_DLIYLFIAWPV_					0	0	0		ENST00000378891.9_3_1:1270760-1271384:-|nuORF	ENST00000378891.9_3_1:1270760-1271384:-|nuORF	ENST00000378891.9_3_1:1270760-1271384:-|nuORF	MSMS	HCT116MG_D190212_S3	3	675.3800048828125	2	675.378832	1348.74311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.343	1	48.027	47.527	48.527	-0.31596								0	0	0	0.95581	1	18179	18179		3.2813	0	1				6335	7547	3452	3483	6189	6189					0.08268877302225519
DLKATGRDSFP	11	Unmodified	_DLKATGRDSFP_					0	0	0		BDP1|p.T1314Qfs*10|1|0.15|ENSG00000145734|chr5:71511028-71511028|A/-|frameshift_variant;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-5|BDP1;ENST00000508157.3_1_5:70790975-70807035:+|nuORF	BDP1|p.T1314Qfs*10|1|0.15|ENSG00000145734|chr5:71511028-71511028|A/-|frameshift_variant	BDP1|p.T1314Qfs*10|1|0.15|ENSG00000145734|chr5:71511028-71511028|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	603.8096923828125	2	603.809302	1205.60405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.877	1	28.537	28.037	29.037	-0.34059								0	0	0	0.93717	1	10404	10404		13.042	0.80181	1				6336	261	3453	3484	6190	6190					0.009473076667518399
DLKGPHVDV	9	Unmodified	_DLKGPHVDV_					0	0	0		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	490.2764587402344	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.78	1	33.78	33.28	34.28	0								0	0	0	0.76575	1	12513	12513		15.847	2.3393	1				6337	82	3454	3485	6191	6191					0.023328834091330464
DLKLWKFIFKD	11	Unmodified	_DLKLWKFIFKD_					0	0	0		TRIB2|p.R179W|1|0.14|ENSG00000071575|chr2:12723524-12723524|C/T|missense_variant	TRIB2|p.R179W|1|0.14|ENSG00000071575|chr2:12723524-12723524|C/T|missense_variant	TRIB2|p.R179W|1|0.14|ENSG00000071575|chr2:12723524-12723524|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	726.919189453125	2	726.916113	1451.81767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.611	1	32.398	31.898	32.898	-0.21294								0	0	0	0.95686	1	12072	12072		2.7352	0.23671	1				6338	18661	3455	3486	6192	6192					0.10983640113590809
DLKQFQDQK	9	Unmodified	_DLKQFQDQK_					0	0	0		OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant;OAS2|p.D514Gfs*41|1|0.05|ENSG00000111335|chr12:113006482-113006483|-/G|frameshift_variant;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2;OAS2|p.N135Ifs*15|1|0.3|ENSG00000111335|chr12:112987259-112987259|A/-|frameshift_variant;nc|ENSG00000111335|P29728-3|OAS2;OAS2|p.I214Sfs*41|1|0.33|ENSG00000111335|chr12:112997526-112997526|A/-|frameshift_variant	OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant	OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	574.8193359375	2	575.29857	1148.58259	0.35854	0.00020627	-0.24795	-0.00014264	0.1106	6.3627E-05	575.2983894284098	31.038	0.36152	30.771	30.56	30.922	-0.26704					12	6	3	0	0	0	0.21474	1	11384	11384		29.082	2.8134	1	64524000			6339	2289	3456	3487	6193	6193					0.014239226380595937
DLKQYWMPD	9	Unmodified	_DLKQYWMPD_					0	0	0		PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant;ENSG00000115020|ENST00000264380|PIKFYVE;PIKFYVE|p.I362Sfs*17|1|0.25|ENSG00000115020|chr2:208300964-208300964|A/-|frameshift_variant;nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE;PIKFYVE|p.N886Tfs*7|1|0.26|ENSG00000115020|chr2:208325465-208325465|A/-|frameshift_variant	PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	598.2775268554688	2	598.276249	1194.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.532	1	38.447	37.947	38.947	-0.084618								0	0	0	0.74083	1	14476	14476		17.113	6.3134	1				6340	2440	3457	3488	6194	6194					-0.051542244996426234
DLKRCKLAN	9	Unmodified	_DLKRCKLAN_					0	0	0		ENST00000477110.6_1_X:299337-302121:-|nuORF;nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENST00000468169.6_1_X:299440-306311:-|nuORF;ENSG00000167393|ENST00000390665|PPP2R3B	ENST00000477110.6_1_X:299337-302121:-|nuORF	ENST00000477110.6_1_X:299337-302121:-|nuORF	MSMS	HCT116MG_D190212_S2	2	530.7767333984375	2	530.800226	1059.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.757	1	54.569	54.069	55.069	-0.18842								0	0	0	0.76659	1	21090	21090		13.042	2.2185	1				6341	4918	3458	3489	6195	6195					0.05848894211044353
DLKWNYKY	8	Unmodified	_DLKWNYKY_					0	0	0			REV__nc|ENSG00000179115|Q9Y285-2|FARSA	REV__nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-SECPEP	HCT116MG_D190212_S1	1	564.8484497070312	2	565.287474	1128.5604	0.20886	0.00011807	1.162	0.00065685	1.3708	0.00077492	565.2882419695745	48.556	0.20609	48.556	48.408	48.614	0					5	3	2	0	0	0	0.33574	1	18447	18447		0.79363	0	1	4957100	+		6342	13627	3459	3490	6196	6196					0.001257429602674165
DLLAESVKI	9	Unmodified	_DLLAESVKI_					0	0	0			REV__ENST00000477452.1_1_13:41948000-41949735:+|nuORF	REV__ENST00000477452.1_1_13:41948000-41949735:+|nuORF	MSMS	HCT116MG_D190212_S1	1	494.2893371582031	2	494.289682	986.564812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.601	1	45.601	45.101	46.101	0								0	0	0	0.64498	1	17281	17281		21.747	2.3076	1		+		6343	13403	3460	3491	6197	6197					0.07099207383191697
DLLFLGKAQKR	11	Unmodified	_DLLFLGKAQKR_					0	0	0			REV__ENST00000492315.5_1_7:100864992-100867236:+|nuORF	REV__ENST00000492315.5_1_7:100864992-100867236:+|nuORF	MSMS	HCT116MG_D190212_S4	4	430.2649841308594	3	430.262712	1287.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.311	1	39.933	39.433	40.433	-0.37828								0	0	0	0.95686	1	14784	14784		1.1098	0	1		+		6344	16051	3461	3492	6198	6198					0.13393316139536182
DLLHEKLKY	9	Unmodified	_DLLHEKLKY_					0	0	0			REV__RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	REV__RGPD2|p.F1350Lfs*25|1|0.25|ENSG00000185304|chr2:87782974-87782974|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	579.827392578125	2	579.829506	1157.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.663	1	42.593	42.093	43.093	-0.069984								0	0	0	0.768	1	16154	16154		7.9102	1.7044	1		+		6345	13842	3462	3493	6199	6199					0.07194274057178518
DLLKKVRKLM	10	Unmodified	_DLLKKVRKLM_					0	0	0			REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	622.2439575195312	2	622.399576	1242.7846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.257	1	41.189	40.689	41.689	-0.068199								0	0	0	0.94339	1	15583	15583		6.2058	2.6093	1		+		6346	13181	3463	3494	6200	6200					0.17291734789887414
DLLKKVRKLM	10	Unmodified	_DLLKKVRKLM_					0	0	0			REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	REV__TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	622.4013061523438	2	622.399576	1242.7846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.783	1	44.698	44.198	45.198	-0.084797								0	0	0	0.96377	1	17015	17015		1.6526	0	1		+		6347	13181	3463	3494	6201	6201					0.17291734789887414
DLLLLLLLLPP	11	Unmodified	_DLLLLLLLLPP_					0	0	0		nc|ENSG00000117899|Q14696-2|MESD;ENSG00000117899|ENST00000261758|MESD	nc|ENSG00000117899|Q14696-2|MESD	nc|ENSG00000117899|Q14696-2|MESD	MSMS	HCT116MG_D190212_S3	3	616.9158935546875	2	616.91505	1231.81555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.124	1	43.817	43.317	44.317	-0.30759								0	0	0	0.95581	1	16485	16485		3.2813	1.7994	1				6348	2592	3464	3495	6202	6202					0.2089121137582879
DLLQVRVGQLP	11	Unmodified	_DLLQVRVGQLP_					0	0	0			REV__PRSS33|p.P186Q|1|0.46|ENSG00000103355|chr16:2785129-2785129|G/T|missense_variant	REV__PRSS33|p.P186Q|1|0.46|ENSG00000103355|chr16:2785129-2785129|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	619.2720947265625	2	619.366787	1236.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.601	1	40.531	40.031	41.031	-0.069626								0	0	0	0.95113	1	15316	15316		5.7319	0.83484	1		+		6349	17445	3465	3496	6203	6203					0.1101303686857591
DLLRRRRPWPW	11	Unmodified	_DLLRRRRPWPW_					0	0	0			REV__ENSG00000182871|ENST00000651438|COL18A1	REV__ENSG00000182871|ENST00000651438|COL18A1	MSMS	HCT116MG_D190212_S1	1	775.9440307617188	2	775.944393	1549.87423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.084	1	54.084	53.584	54.584	0								0	0	0	0.95954	1	20730	20730		1.3295	1.0225	1		+		6350	13732	3466	3497	6204	6204					0.12129125513502004
DLLRRRRPWPW	11	Unmodified	_DLLRRRRPWPW_					0	0	0			REV__ENSG00000182871|ENST00000651438|COL18A1	REV__ENSG00000182871|ENST00000651438|COL18A1	MSMS	HCT116MG_D190212_S3	3	775.9437866210938	2	775.944393	1549.87423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.23	1	49.915	49.415	50.415	-0.31525								0	0	0	0.95954	1	18936	18936		1.3295	0.25807	1		+		6351	13732	3466	3497	6205	6205					0.12129125513502004
DLLRRRRWTTV	11	Unmodified	_DLLRRRRWTTV_					0	0	0		ENST00000417396.2_1_5:64483922-64509924:-|nuORF;ENST00000381055.7_1_5:64483922-64510683:-|nuORF	ENST00000417396.2_1_5:64483922-64509924:-|nuORF	ENST00000417396.2_1_5:64483922-64509924:-|nuORF	MSMS	HCT116MG_D190212_S1	1	736.87744140625	2	736.433858	1470.85316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.215	1	48.215	47.715	48.715	0								0	0	0	0.95954	1	18340	18340		1.3295	0.13619	1				6352	7571	3467	3498	6206	6206					0.136571154139574
DLLVHGMP	8	Unmodified	_DLLVHGMP_					0	0	0		nc|ENSG00000138286|Q96BN6-2|FAM149B1;ENSG00000138286|ENST00000242505|FAM149B1	nc|ENSG00000138286|Q96BN6-2|FAM149B1	nc|ENSG00000138286|Q96BN6-2|FAM149B1	MSMS	HCT116MG_D190212_S1	1	441.2309265136719	2	441.231113	880.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.997	1	17.997	17.497	18.497	0								0	0	0	0.8837	1	6160	6160		6.3541	0	1				6353	3547	3468	3499	6207	6207					0.0026677096259390964
DLLWKERLAKK	11	Unmodified	_DLLWKERLAKK_					0	0	0			REV__ENSG00000099260|ENST00000263174|PALMD	REV__ENSG00000099260|ENST00000263174|PALMD	MSMS	HCT116MG_D190212_S2	2	700.4244995117188	2	700.424636	1398.83472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.603	1	57.428	56.928	57.928	-0.17494								0	0	0	0.95636	1	22245	22245		2.9952	0	1		+		6354	11042	3469	3500	6208	6208					0.15125560719388886
DLMKKYWEQLR	11	Unmodified	_DLMKKYWEQLR_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP;REV__ENSG00000100393|ENST00000263253|EP300	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MSMS	HCT116MG_D190212_S1	1	755.4322509765625	2	755.397761	1508.78097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.379	1	40.379	39.879	40.879	0								0	0	0	0.95686	1	15175	15175		2.7352	1.4057	1		+		6355	10293;11082	3470	3501	6209	6209					0.04693020225386135
DLMLLRLTEPA	11	Unmodified	_DLMLLRLTEPA_					0	0	0		ENST00000593859.5_1_19:51323389-51327022:-|nuORF;nc|ENSG00000167748|P06870-2|KLK1;ENSG00000167748|ENST00000301420|KLK1	ENST00000593859.5_1_19:51323389-51327022:-|nuORF	ENST00000593859.5_1_19:51323389-51327022:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	636.7962646484375	2	636.355031	1270.69551	0.71964	0.00045795	0.46861	0.0002982	1.1882	0.00075615	636.3549888416094	56.053	0.25722	56.053	55.913	56.171	0					9	4	3	0	0	0	0.73696	1	21483	21483		8.1555	1.4324	1	11425000			6356	4953	3471	3502	6210	6210					0.07098855039726004
DLNDSSFDLSA	11	Unmodified	_DLNDSSFDLSA_					0	0	0		ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MSMS	HCT116MG_D190212_S4	4	592.6065673828125	2	592.259308	1182.50406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.372	1	39.994	39.494	40.494	-0.37828								0	0	0	0.93607	1	14809	14809		13.615	0	1				6357	6461	3472	3503	6211	6211					-0.0798897445770308
DLNEHVEL	8	Unmodified	_DLNEHVEL_					0	0	0			REV__ENSG00000205476|ENST00000380243|CCDC85C	REV__ENSG00000205476|ENST00000380243|CCDC85C	MULTI-MSMS	HCT116MG_D190212_S3	3	484.7373352050781	2	484.737814	967.461075	0.080258	3.8904E-05	0.32506	0.00015757	0.40532	0.00019647	484.73805530603386	38.54	0.2599	38.238	38.092	38.352	-0.30137					7	4	2	0	0	0	0.51336	1	14280	14280		39.957	1.7818	1	4570600	+		6358	14226	3473	3504	6212	6212					-0.023956997244795275
DLNNFGPR	8	Unmodified	_DLNNFGPR_					0	0	0		sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2;sp|F5HBC6|PP71_HCMVMProteinpp71OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL82PE=3SV=1	sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2	sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2	MULTI-MSMS	HCT116MG_D190212_S3	3	466.73272705078125	2	466.732866	931.451179	0.13761	6.4226E-05	0.02988	1.3946E-05	0.16749	7.8172E-05	466.7327760947027	20.966	1.0445	21.001	20.454	21.499	0.034473					43	19	3	0	0	0	0.64404	1	7369	7369		28.487	4.4663	1	22946000			6359	18193	3474	3505	6213	6213					-0.017288429391896898
DLNPAASRTT	10	Unmodified	_DLNPAASRTT_					0	0	0		CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	523.2686767578125	2	523.26727	1044.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.035	1	39.733	39.233	40.233	-0.30137								0	0	0	0.93202	1	14849	14849		8.7454	0.83525	1				6360	409	3475	3506	6214	6214					-0.0004922343014186481
DLNQGIGEP	9	Unmodified	_DLNQGIGEP_					0	0	0		ENSG00000142634|ENST00000375980|EFHD2	ENSG00000142634|ENST00000375980|EFHD2	ENSG00000142634|ENST00000375980|EFHD2	MULTI-SECPEP	HCT116MG_D190212_S4	4	472.2764587402344	2	471.729989	941.445425	0.26359	0.00012434	-1.2921	-0.00060951	-1.0285	-0.00048517	471.7297339678439	26.976	0.15578	26.664	26.587	26.742	-0.3114					4	2	2	0	0	0	0.18783	1	9606	9606		28.487	0	1	968380			6361	3769	3476	3507	6215	6215					-0.027639862415185235
DLNQKKRRRKK	11	Unmodified	_DLNQKKRRRKK_					0	0	0		BDP1|p.T1314Qfs*10|1|0.15|ENSG00000145734|chr5:71511028-71511028|A/-|frameshift_variant;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;BDP1|p.N597Ifs*16|1|0.21|ENSG00000145734|chr5:71495394-71495394|A/-|frameshift_variant	BDP1|p.T1314Qfs*10|1|0.15|ENSG00000145734|chr5:71511028-71511028|A/-|frameshift_variant	BDP1|p.T1314Qfs*10|1|0.15|ENSG00000145734|chr5:71511028-71511028|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	735.4619140625	2	735.460407	1468.90626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.976	1	43.976	43.476	44.476	0								0	0	0	0.95686	1	16629	16629		2.7352	1.5419	1				6362	261	3477	3508	6216	6216					0.19056493196626434
DLNVSASEKLY	11	Unmodified	_DLNVSASEKLY_					0	0	0			REV__HMCN1|p.V1339Gfs*22|1|0.42|ENSG00000143341|chr1:186000186-186000186|T/-|frameshift_variant	REV__HMCN1|p.V1339Gfs*22|1|0.42|ENSG00000143341|chr1:186000186-186000186|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	619.8168334960938	2	619.816793	1237.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.239	1	36.937	36.437	37.437	-0.30137								0	0	0	0.91257	1	13787	13787		18.373	2.224	1		+		6363	12383	3478	3509	6217	6217					0.009727547441116258
DLPGAGPL	8	Unmodified	_DLPGAGPL_					0	0	0		nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6;ENST00000492543.1_1_2:220077961-220078063:-|nuORF;ENST00000446716.5_1_2:220075515-220081188:-|nuORF	nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-MSMS	HCT116MG_D190212_S2	2	370.20245361328125	2	370.202879	738.391205	-0.07748	-2.8683E-05	0.0021865	8.0947E-07	-0.075293	-2.7874E-05	370.2027708248701	47.29	0.51682	47.168	46.922	47.439	-0.12175					21	9	3	0	0	0	0.64761	1	18014	18014		28.173	0	1	125750000			6364	2479	3479	3510	6218	6218					0.011544663975769254
DLPGYFVALP	10	Unmodified	_DLPGYFVALP_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2925415039062	2	546.292225	1090.5699	0.56879	0.00031073	0.18087	9.881E-05	0.74967	0.00040954	546.2922598186699	56.261	0.20668	56.078	55.949	56.156	-0.18261					8	3	3	0	0	0	0.43205	1	21732	21732		39.957	1.9833	1	30151000	+		6365	13961	3480	3511	6219	6219					0.028235112458105505
DLPHQGAVSA	10	Unmodified	_DLPHQGAVSA_					0	0	0			REV__BRINP2|p.Q261Sfs*6|1|0.21|ENSG00000198797|chr1:177276200-177276201|-/T|frameshift_variant	REV__BRINP2|p.Q261Sfs*6|1|0.21|ENSG00000198797|chr1:177276200-177276201|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	497.7513732910156	2	497.751256	993.487959	0.32806	0.00016329	0.11016	5.4832E-05	0.43822	0.00021813	497.75119926299266	31.57	0.57391	31.299	30.96	31.534	-0.27028					15	10	2	0	0	0	0.37752	1	11539	11539		43.772	1.8168	1	51947000	+		6366	10054	3481	3512	6220	6220					-0.009045911132830042
DLPTEAKKLQL	11	Unmodified	_DLPTEAKKLQL_					0	0	0		VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant;VPS33A|p.R460Qfs*17|2|0.28|ENSG00000139719|chr12:122235849-122235850|-/C|frameshift_variant;VPS33A|p.G459Afs*86|7|0.14|ENSG00000139719|chr12:122235850-122235850|C/-|frameshift_variant;VPS33A|p.G552Afs*2|1|0.26|ENSG00000139719|chr12:122232382-122232382|C/-|frameshift_variant;ENSG00000139719|ENST00000267199|VPS33A	VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant	VPS33A|p.F371Lfs*4|1|0.18|ENSG00000139719|chr12:122239929-122239929|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	627.907958984375	2	628.366453	1254.71835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.526	1	42.15	41.65	42.65	-0.37565								0	0	0	0.92235	1	15633	15633		17.113	7.7298	1				6367	3643	3482	3513	6221	6221					0.10118197428846543
DLQDRILPP	9	Unmodified	_DLQDRILPP_					0	0	0		FER1L5|p.K1269Efs*5|1|0.36|ENSG00000249715|chr2:96694446-96694447|AA/-|frameshift_variant;FER1L5|p.Q1290Pfs*29|1|0.44|ENSG00000249715|chr2:96695548-96695549|-/C|frameshift_variant;ENSG00000249715|ENST00000624922|FER1L5	FER1L5|p.K1269Efs*5|1|0.36|ENSG00000249715|chr2:96694446-96694447|AA/-|frameshift_variant	FER1L5|p.K1269Efs*5|1|0.36|ENSG00000249715|chr2:96694446-96694447|AA/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	534.2579956054688	2	533.798206	1065.58186	0.41095	0.00021936	1.4468	0.00077231	1.8578	0.00099168	534.3007663654663	41.953	0.20834	41.651	41.52	41.729	-0.30257					5	3	2	0	0	0	0.25347	1	15570	15570		6.2058	0	1	1702300			6368	6577	3483	3514	6222	6222					0.051691279890064834
DLQEVTSV	8	Unmodified	_DLQEVTSV_					0	0	0			REV__ENST00000601803.5_1_19:19032987-19035509:+|nuORF	REV__ENST00000601803.5_1_19:19032987-19035509:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	890.4473266601562	1	890.446553	889.439277	0.84588	0.00075321	-0.10522	-9.3691E-05	0.74066	0.00065952	890.4466609381948	38.569	0.4757	38.485	38.33	38.806	-0.084621					11	8	2	0	0	0	0.068362	1	14513	14513		103.75	18.476	1	13468000	+		6369	10349	3484	3515	6223	6223					-0.009865044730304362
DLQGHQAVP	9	Unmodified	_DLQGHQAVP_					0	0	0		nc|ENSG00000173253|Q9Y5R5-3|DMRT2;ENST00000382255.7_2_9:1055783-1057270:+|nuORF;ENST00000259622.10_2_9:1056133-1057270:+|nuORF;ENSG00000173253|ENST00000358146|DMRT2	nc|ENSG00000173253|Q9Y5R5-3|DMRT2	nc|ENSG00000173253|Q9Y5R5-3|DMRT2	MULTI-SECPEP	HCT116MG_D190212_S2	2	483.2690734863281	2	482.745973	963.477394	0.4896	0.00023635	-0.026739	-1.2908E-05	0.46287	0.00022345	482.74590411544756	33.229	0.61922	33.033	32.86	33.479	-0.19598					15	11	2	0	0	0	0.16757	1	12383	12383		36.127	2.0246	1	9792000			6370	5282	3485	3516	6224	6224					-0.005805737677064826
DLQKKKKRKQ	10	Unmodified	_DLQKKKKRKQ_					0	0	0		ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ENSG00000163848|ENST00000360647|ZNF148	ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant	ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	650.4141235351562	2	650.414603	1298.81465	0.7044	0.00045815	-1.0262	-0.00066747	-0.32182	-0.00020931	650.4137092919269	57.412	0.25938	57.237	57.159	57.418	-0.17494					7	4	2	0	0	0	0.89272	1	22208	22208		0.40072	0.050084	1	5935800			6371	4641	3486	3517	6225	6225					0.17719809779464413
DLQLNVCLFY	10	Unmodified	_DLQLNVCLFY_					0	0	0		nc|ENSG00000175267|A6NCI4-2|VWA3A;VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant;ENSG00000175267|ENST00000389398|VWA3A	nc|ENSG00000175267|A6NCI4-2|VWA3A	nc|ENSG00000175267|A6NCI4-2|VWA3A	MULTI-SECPEP	HCT116MG_D190212_S3	3	409.5399169921875	3	409.874125	1226.60055	0.22481	9.2143E-05	-0.021688	-8.8895E-06	0.20312	8.3253E-05	409.87421569104015	32.715	0.26026	32.43	32.248	32.508	-0.28511					6	4	2	0	0	0	0.31054	1	12011	12011		3.8763	0.55669	1	3209200			6372	5369	3487	3518	6226	6226					-0.0036907843145854713
DLQLNVCLFY	10	Unmodified	_DLQLNVCLFY_					0	0	0		nc|ENSG00000175267|A6NCI4-2|VWA3A;VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant;ENSG00000175267|ENST00000389398|VWA3A	nc|ENSG00000175267|A6NCI4-2|VWA3A	nc|ENSG00000175267|A6NCI4-2|VWA3A	MULTI-MATCH	HCT116MG_D190212_S2	2		3	409.874125	1226.60055	-0.25176	-0.00010319	1.3104	0.0005371	1.0587	0.00043392	409.8743515274879	32.563	0.15652	32.333	32.202	32.359	-0.23009	-0.04861	0.0014321	NaN	3.8763	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5572700			6373	5369	3487	3518							-0.0036907843145854713
DLQNCSLEDP	10	Unmodified	_DLQNCSLEDP_					0	0	0		ENST00000491220.1_1_2:27436068-27438261:+|nuORF;nc|ENSG00000138085|Q6UW56-2|ATRAID;ENSG00000138085|ENST00000380171|ATRAID;nc|ENSG00000138085|Q6UW56-3|ATRAID	ENST00000491220.1_1_2:27436068-27438261:+|nuORF	ENST00000491220.1_1_2:27436068-27438261:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	567.2433471679688	2	567.242603	1132.47065	0.39556	0.00022438	1.0015	0.00056809	1.397	0.00079247	567.2430687284891	19.106	0.31178	19.176	18.979	19.291	0.069159					8	5	2	0	0	0	0.64492	1	6554	6554		24.991	0.97039	1	4325800			6374	3531	3488	3519	6227	6227					-0.09028299501255788
DLQNQFQKE	9	Unmodified	_DLQNQFQKE_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT;ENST00000466474.5_1_21:47766077-47773062:+|nuORF;PCNT|p.G2137Vfs*2|1|0.18|ENSG00000160299|chr21:46416323-46416323|G/-|frameshift_variant	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	HCT116MG_D190212_S4	4	575.2805786132812	2	575.280377	1148.5462	0.48328	0.00027802	0.32749	0.0001884	0.81077	0.00046642	575.2803311360592	25.907	2.2359	25.617	24.372	26.608	-0.29023					116	42	4	0	0	0	0.28073	1	9258	9258		32.786	3.7041	1	45755000			6375	4444	3489	3520	6228	6228					-0.022129542586753814
DLQQMYSWLYE	11	Unmodified	_DLQQMYSWLYE_					0	0	0			REV__ENSG00000120658|ENST00000690772|ENOX1	REV__ENSG00000120658|ENST00000690772|ENOX1	MSMS	HCT116MG_D190212_S2	2	738.3318481445312	2	738.32921	1474.64387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.48	1	24.099	23.599	24.599	-0.38003								0	0	0	0.9387	1	8774	8774		12.241	0.74595	1		+		6376	11695	3490	3521	6229	6229					-0.0744693344481675
DLQSDNVYRAD	11	Unmodified	_DLQSDNVYRAD_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MSMS	HCT116MG_D190212_S4	4	648.2991333007812	2	648.296756	1294.57896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.031	1	28.69	28.19	29.19	-0.34059								0	0	0	0.94269	1	10466	10466		10.151	0.76745	1				6377	5702	3491	3522	6230	6230					-0.05654791926485814
DLREAVEAP	9	Unmodified	_DLREAVEAP_					0	0	0			REV__JADE2|p.P642Hfs*26|1|0.27|ENSG00000043143|chr5:134578865-134578865|G/-|frameshift_variant	REV__JADE2|p.P642Hfs*26|1|0.27|ENSG00000043143|chr5:134578865-134578865|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1000.5795288085938	1	999.510551	998.503274	0.50866	0.00050841	0.2233	0.00022319	0.73196	0.0007316	999.5107423887918	31.075	0.51744	30.808	30.456	30.974	-0.26704					14	9	2	0	0	0	0.28073	1	11419	11419		32.786	2.9451	1	13493000	+		6378	10595	3492	3523	6231	6231					0.0039627568389732915
DLRKHRRKLPP	11	Unmodified	_DLRKHRRKLPP_					0	0	0		ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	MSMS	HCT116MG_D190212_S4	4	708.4380493164062	2	708.438944	1414.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.471	1	46.1	45.6	46.6	-0.37134								0	0	0	0.95925	1	17158	17158		1.4819	0.28856	1				6379	8587	3493	3524	6232	6232					0.172497231392299
DLRKKPQNKEK	11	Unmodified	_DLRKKPQNKEK_					0	0	0			REV__ENST00000448393.6_1_1:158985703-158988049:+|nuORF	REV__ENST00000448393.6_1_1:158985703-158988049:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	692.4060668945312	2	692.406975	1382.7994	0.71693	0.00049641	-0.59889	-0.00041467	0.11804	8.1734E-05	692.4062740746456	52.012	2.7319	52.012	50.833	53.565	0					84	52	3	0	0	0	0.74191	1	19941	19941		2.7352	2.7352	1	58405000	+		6380	15694	3494	3525	6233	6233					0.12330898191612505
DLRKTLLKLRR	11	Unmodified	_DLRKTLLKLRR_					0	0	0		RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	706.466552734375	2	706.464627	1410.9147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.355	1	59.094	58.594	59.594	-0.26088								0	0	0	0.96157	1	22601	22601		0.26902	0.033176	1				6381	9801	3495	3526	6234	6234					0.22568047113259126
DLRPHRQWE	9	Unmodified	_DLRPHRQWE_					0	0	0		ENST00000389817.7_1_11:17417252-17419904:-|nuORF	ENST00000389817.7_1_11:17417252-17419904:-|nuORF	ENST00000389817.7_1_11:17417252-17419904:-|nuORF	MSMS	HCT116MG_D190212_S1	1	619.075927734375	2	618.815253	1235.61595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.453	1	38.453	37.953	38.953	0								0	0	0	0.76718	1	14397	14397		10.824	0.75	1				6382	7596	3496	3527	6235	6235					0.007569692006427431
DLRRKKTLPIV	11	Unmodified	_DLRRKKTLPIV_					0	0	0		UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant;UNC13C|p.P2056Qfs*10|1|0.33|ENSG00000137766|chr15:54622384-54622384|C/-|frameshift_variant;ENSG00000137766|ENST00000260323|UNC13C;UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant;UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	669.935546875	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.116	1	53.817	53.317	54.317	-0.29946								0	0	0	0.95954	1	20498	20498		1.3295	0	1				6383	3497	3497	3528	6236	6236					0.19529266956328684
DLRRKKTLPIV	11	Unmodified	_DLRRKKTLPIV_					0	0	0		UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant;UNC13C|p.P2056Qfs*10|1|0.33|ENSG00000137766|chr15:54622384-54622384|C/-|frameshift_variant;ENSG00000137766|ENST00000260323|UNC13C;UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant;UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	669.9351806640625	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.478	1	54.155	53.655	54.655	-0.32349								0	0	0	0.95686	1	20371	20371		2.7352	0	1				6384	3497	3497	3528	6237	6237					0.19529266956328684
DLRRRKKL	8	Unmodified	_DLRRRKKL_					0	0	0			REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	MSMS	HCT116MG_D190212_S1	1	362.2410888671875	3	362.240241	1083.69889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.83	1	29.83	29.33	30.33	0								0	0	0	0.8837	1	10917	10917		1.6526	0	1		+		6385	10597	3498	3529	6238	6238					0.16039330719286227
DLRRRQRR	8	Unmodified	_DLRRRQRR_					0	0	0			REV__ENST00000255977.6_2_7:140178977-140179166:-|nuORF	REV__ENST00000255977.6_2_7:140178977-140179166:-|nuORF	MSMS	HCT116MG_D190212_S1	1	385.9019470214844	3	385.902511	1154.6857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.358	1	10.358	9.8584	10.858	0								0	0	0	0.8837	1	3173	3173		1.4819	0	1		+		6386	14607	3499	3530	6239	6239					0.11454892659889993
DLRRRQRRQRR	11	Unmodified	_DLRRRQRRQRR_					0	0	0			REV__ENST00000255977.6_2_7:140178977-140179166:-|nuORF	REV__ENST00000255977.6_2_7:140178977-140179166:-|nuORF	MSMS	HCT116MG_D190212_S1	1	532.8455200195312	3	532.656111	1594.9465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.285	1	50.285	49.785	50.785	0								0	0	0	0.96192	1	19183	19183		0.08335	0.010087	1		+		6387	14607	3500	3531	6240	6240					0.17282852639777957
DLRRRQRRQRR	11	Unmodified	_DLRRRQRRQRR_					0	0	0			REV__ENST00000255977.6_2_7:140178977-140179166:-|nuORF	REV__ENST00000255977.6_2_7:140178977-140179166:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	532.36962890625	3	532.656111	1594.9465	0.44438	0.0002367	-1.0646	-0.00056708	-0.62024	-0.00033037	532.6551735836384	54.308	0.1523	54.308	54.231	54.384	0					4	2	2	0	0	0	0.3662	1	20807	20807		1.2148	1.1315	1	13200000	+		6388	14607	3500	3531	6241	6241					0.17282852639777957
DLRRRRRPLR	10	Unmodified	_DLRRRRRPLR_					0	0	0			REV__ENST00000234198.8_1_2:172967252-172967456:-|nuORF	REV__ENST00000234198.8_1_2:172967252-172967456:-|nuORF	MSMS	HCT116MG_D190212_S4	4	697.78759765625	2	697.439809	1392.86507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.167	1	52.832	52.332	53.332	-0.33473								0	0	0	0.9696	1	19842	19842		0.35063	0.043601	1		+		6389	14554	3501	3532	6242	6242					0.18434776947833598
DLRSKLEEF	9	Unmodified	_DLRSKLEEF_					0	0	0			REV__ENSG00000163815|ENST00000296130|CLEC3B	REV__ENSG00000163815|ENST00000296130|CLEC3B	MSMS	HCT116MG_D190212_S2	2	568.7830810546875	2	568.800946	1135.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.39	1	40.319	39.819	40.819	-0.070763								0	0	0	0.76694	1	15230	15230		11.64	0.81637	1		+		6390	12953	3502	3533	6243	6243					0.02496806780800398
DLRWARPF	8	Unmodified	_DLRWARPF_					0	0	0			REV__ENST00000586361.5_1_19:36387800-36388662:-|nuORF	REV__ENST00000586361.5_1_19:36387800-36388662:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	531.7576904296875	2	530.787976	1059.5614	0.39476	0.00020953	1.1063	0.00058719	1.501	0.00079672	530.7881432584051	37.064	0.23083	36.679	36.591	36.822	-0.38486					6	4	2	0	0	0	0.81821	1	13597	13597		9.3474	0	1	1923900	+		6391	15359	3503	3534	6244	6244					0.03400002119838064
DLRWRFWWEYV	11	Unmodified	_DLRWRFWWEYV_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MSMS	HCT116MG_D190212_S2	2	552.6090698242188	3	552.60877	1654.80448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.423	1	39.345	38.845	39.845	-0.077835								0	0	0	0.96121	1	14837	14837		0.45452	0.35968	1		+		6392	11868	3504	3535	6245	6245					0.003272020542226528
DLRYNEVL	8	Unmodified	_DLRYNEVL_					0	0	0			REV__C5|p.Q1112R|1|0.43|ENSG00000106804|chr9:120982710-120982710|T/C|missense_variant	REV__C5|p.Q1112R|1|0.43|ENSG00000106804|chr9:120982710-120982710|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2703552246094	2	511.269281	1020.52401	0.49463	0.00025289	-0.079217	-4.0501E-05	0.41541	0.00021239	511.26918359146833	43.814	0.30869	43.736	43.556	43.865	-0.078373					8	5	2	0	0	0	0.34844	1	16637	16637		54.774	2.5052	1	18581000	+		6393	10071	3505	3536	6246	6246					0.0145686606357458
DLSKPRLKY	9	Unmodified	_DLSKPRLKY_					0	0	0			REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	REV__tr|U7SYW1|U7SYW1_FUSNUATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00939PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	560.328125	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.12	1	39.741	39.241	40.241	-0.37936								0	0	0	0.76818	1	14708	14708		7.2892	0	1		+		6394	17870	3506	3537	6247	6247					0.09021693777026485
DLSLERERLLH	11	Unmodified	_DLSLERERLLH_					0	0	0		JAKMIP1|p.R421H|1|0.12|ENSG00000152969|chr4:6078979-6078979|C/T|missense_variant	JAKMIP1|p.R421H|1|0.12|ENSG00000152969|chr4:6078979-6078979|C/T|missense_variant	JAKMIP1|p.R421H|1|0.12|ENSG00000152969|chr4:6078979-6078979|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1380.7591552734375	1	1380.75939	1379.75211	0.5972	0.00082459	-0.67888	-0.00093737	-0.081674	-0.00011277	1380.7581504312443	57.697	0.3625	57.697	57.464	57.826	0					20	6	4	0	0	0	0.74191	1	22168	22168		1.3295	0.92882	1	171450000			6395	9251	3507	3538	6248	6248					0.07742618920610767
DLSLTRAAR	9	Unmodified	_DLSLTRAAR_					0	0	0		CRTC1|p.N231Tfs*5|1|0.15|ENSG00000105662|chr19:18760031-18760031|A/-|frameshift_variant;CRTC1|p.S245Pfs*5|1|0.19|ENSG00000105662|chr19:18760069-18760069|G/-|frameshift_variant;CRTC1|p.L314Cfs*3|1|0.55|ENSG00000105662|chr19:18765453-18765453|C/-|frameshift_variant;CRTC1|p.G395Wfs*56|1|0.36|ENSG00000105662|chr19:18768649-18768650|-/C|frameshift_variant;CRTC1|p.E427Rfs*24|1|0.39|ENSG00000105662|chr19:18768743-18768744|-/C|frameshift_variant;CRTC1|p.P426Qfs*85|1|0.46|ENSG00000105662|chr19:18768744-18768744|C/-|frameshift_variant;CRTC1|p.P571Qfs*4|1|0.31|ENSG00000105662|chr19:18777183-18777184|CC/-|frameshift_variant;CRTC1|p.S572Afs*6|3|0.59|ENSG00000105662|chr19:18777183-18777183|C/-|frameshift_variant;nc|ENSG00000105662|Q6UUV9-3|CRTC1;ENSG00000105662|ENST00000321949|CRTC1;nc|ENSG00000105662|Q6UUV9-2|CRTC1	CRTC1|p.N231Tfs*5|1|0.15|ENSG00000105662|chr19:18760031-18760031|A/-|frameshift_variant	CRTC1|p.N231Tfs*5|1|0.15|ENSG00000105662|chr19:18760031-18760031|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1002.5723876953125	1	1002.56907	1001.56179	0.63278	0.00063441	3.103	0.003111	3.7358	0.0037454	1002.5718845517791	56.627	0.16012	56.445	56.364	56.524	-0.18261					4	2	2	0	0	0	0.32162	1	21881	21881		28.487	6.7402	1	16183000			6396	602	3508	3539	6249	6249					0.061073770490338575
DLSSPGMT	8	Unmodified	_DLSSPGMT_					0	0	0		ENST00000493483.5_1_1:33799498-33815372:-|nuORF;ENST00000485928.5_1_1:33797943-33815375:-|nuORF;PHC2|p.F605Lfs*128|1|0.21|ENSG00000134686|chr1:33332348-33332349|-/AACCC|frameshift_variant;nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2;ENSG00000134686|ENST00000683057|PHC2	ENST00000493483.5_1_1:33799498-33815372:-|nuORF	ENST00000493483.5_1_1:33799498-33815372:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	807.356689453125	1	807.355296	806.348019	0.87209	0.00070409	0.9447	0.00076271	1.8168	0.0014668	807.3558294129272	54.877	0.35838	54.689	54.509	54.867	-0.18797					16	6	4	0	0	0	0.78216	1	21140	21140		13.508	0	1	380210000			6397	8290	3509	3540	6250	6250					-0.06290091441996992
DLSSPGMT	8	Unmodified	_DLSSPGMT_					0	0	0		ENST00000493483.5_1_1:33799498-33815372:-|nuORF;ENST00000485928.5_1_1:33797943-33815375:-|nuORF;PHC2|p.F605Lfs*128|1|0.21|ENSG00000134686|chr1:33332348-33332349|-/AACCC|frameshift_variant;nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2;ENSG00000134686|ENST00000683057|PHC2	ENST00000493483.5_1_1:33799498-33815372:-|nuORF	ENST00000493483.5_1_1:33799498-33815372:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	807.3564453125	1	807.355296	806.348019	1.0128	0.0008177	0.77782	0.00062797	1.7906	0.0014457	807.3556479984217	55.011	0.20869	54.693	54.563	54.771	-0.31774					8	3	3	0	0	0	0.78216	1	20592	20592		13.508	0	1	10228000			6398	8290	3509	3540	6251	6251					-0.06290091441996992
DLSTLIVWL	9	Unmodified	_DLSTLIVWL_					0	0	0		nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1	nc|ENSG00000079691|Q5VZK9-2|CARMIL1	nc|ENSG00000079691|Q5VZK9-2|CARMIL1	MSMS	HCT116MG_D190212_S2	2	530.3059692382812	2	530.307875	1058.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.863	1	45.761	45.261	46.261	-0.1014								0	0	0	0.76669	1	17453	17453		12.532	1.7076	1				6399	1385	3510	3541	6252	6252					0.07424084279887211
DLTDILKDP	9	Unmodified	_DLTDILKDP_					0	0	0		LRRC75A|p.L247P|1|0.26|ENSG00000181350|chr17:16443883-16443883|A/G|missense_variant;ENSG00000181350|ENST00000470794|LRRC75A	LRRC75A|p.L247P|1|0.26|ENSG00000181350|chr17:16443883-16443883|A/G|missense_variant	LRRC75A|p.L247P|1|0.26|ENSG00000181350|chr17:16443883-16443883|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	515.595947265625	2	515.276772	1028.53899	0.20897	0.00010768	0.096447	4.9697E-05	0.30542	0.00015738	515.2766455773019	51.442	0.41166	51.262	51.118	51.53	-0.18008					11	7	2	0	0	0	0.57626	1	19834	19834		12.532	0	1	13991000			6400	5633	3511	3542	6253	6253					0.025863131409323614
DLTGKAKG	8	Unmodified	_DLTGKAKG_					0	0	0		ENST00000570036.5_1_16:84513521-84531159:-|nuORF;ENSG00000140950|ENST00000343629|MEAK7	ENST00000570036.5_1_16:84513521-84531159:-|nuORF	ENST00000570036.5_1_16:84513521-84531159:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	395.22698974609375	2	395.226885	788.439217	0.2728	0.00010782	-0.29442	-0.00011636	-0.021617	-8.5435E-06	395.2267049851962	31.612	0.31164	31.363	31.198	31.51	-0.24883					11	5	3	0	0	0	0.58007	1	11675	11675		34.102	7.2188	1	40328000			6401	3694	3512	3543	6254	6254					0.03653540317623083
DLTGKAKG	8	Unmodified	_DLTGKAKG_					0	0	0		ENST00000570036.5_1_16:84513521-84531159:-|nuORF;ENSG00000140950|ENST00000343629|MEAK7	ENST00000570036.5_1_16:84513521-84531159:-|nuORF	ENST00000570036.5_1_16:84513521-84531159:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	789.4475708007812	1	789.446494	788.439217	1.144	0.00090311	0.16404	0.0001295	1.308	0.0010326	789.4465004842929	31.629	0.25963	31.38	31.198	31.458	-0.24883					8	4	2	0	0	0	0.58007	1	11676	11676		34.102	1.797	1	32864000			6402	3694	3512	3543	6255	6255					0.03653540317623083
DLTGKAKG	8	Unmodified	_DLTGKAKG_					0	0	0		ENST00000570036.5_1_16:84513521-84531159:-|nuORF;ENSG00000140950|ENST00000343629|MEAK7	ENST00000570036.5_1_16:84513521-84531159:-|nuORF	ENST00000570036.5_1_16:84513521-84531159:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	395.226885	788.439217	-0.078735	-3.1118E-05	0.4976	0.00019667	0.41887	0.00016555	395.22692520068017	31.669	0.20854	31.399	31.273	31.482	-0.27028	0.017866	0.00054482	NaN	34.102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1808300			6403	3694	3512	3543							0.03653540317623083
DLTKLGIVS	9	Unmodified	_DLTKLGIVS_					0	0	0			REV__LRRK2|p.N710Mfs*2|1|0.49|ENSG00000188906|chr12:40278144-40278144|A/-|frameshift_variant	REV__LRRK2|p.N710Mfs*2|1|0.49|ENSG00000188906|chr12:40278144-40278144|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	473.284912109375	2	473.2844	944.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.954	1	38.653	38.153	39.153	-0.30137								0	0	0	0.76718	1	14447	14447		10.824	0.64053	1		+		6404	13980	3513	3544	6256	6256					0.07975224728761532
DLTLILVYW	9	Unmodified	_DLTLILVYW_					0	0	0			REV__ENST00000371564.7_1_20:50004293-50004545:-|nuORF	REV__ENST00000371564.7_1_20:50004293-50004545:-|nuORF	MSMS	HCT116MG_D190212_S1	1	568.2730102539062	2	568.323525	1134.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.751	1	31.751	31.251	32.251	0								0	0	0	0.76793	1	11693	11693		12.532	5.8084	1		+		6405	15168	3514	3545	6257	6257					0.07056657313978576
DLTPIFKDY	9	Unmodified	_DLTPIFKDY_					0	0	0		ENST00000556933.1_1_14:65067322-65068336:-|nuORF;ENST00000502634.1_1_5:20304521-20305535:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50;ENST00000469163.1_1_22:45574147-45579448:+|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MSMS	HCT116MG_D190212_S2	2	556.5632934570312	2	556.28714	1110.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.589	1	40.52	40.02	41.02	-0.069626								0	0	0	0.76718	1	15311	15311		10.824	0.75	1				6406	1592	3515	3546	6258	6258					0.008869035205634646
DLTQVQKN	8	Unmodified	_DLTQVQKN_					0	0	0		DOCK5|p.F417I|1|0.11|ENSG00000147459|chr8:25310463-25310463|T/A|missense_variant;DOCK5|p.S612Kfs*4|1|0.33|ENSG00000147459|chr8:25325472-25325473|-/C|frameshift_variant;ENSG00000147459|ENST00000276440|DOCK5	DOCK5|p.F417I|1|0.11|ENSG00000147459|chr8:25310463-25310463|T/A|missense_variant	DOCK5|p.F417I|1|0.11|ENSG00000147459|chr8:25310463-25310463|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	474.6365661621094	2	473.253631	944.49271	0.35418	0.00016762	-0.11561	-5.4711E-05	0.23857	0.00011291	473.2535219811826	22.514	0.62291	22.128	21.947	22.57	-0.3852					28	11	4	0	0	0	0.80542	1	8006	8006		10.824	0	1	209400000			6407	723	3516	3547	6259	6259					0.018242930294718462
DLTRPLRHLPV	11	Unmodified	_DLTRPLRHLPV_					0	0	0			REV__ENSG00000171119|ENST00000303212|NRTN	REV__ENSG00000171119|ENST00000303212|NRTN	MSMS	HCT116MG_D190212_S3	3	658.8934936523438	2	658.893503	1315.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.089	1	43.781	43.281	44.281	-0.30747								0	0	0	0.94416	1	16471	16471		9.3831	2.66	1		+		6408	13332	3517	3548	6260	6260					0.12719834371068828
DLTSWLPRVLL	11	Unmodified	_DLTSWLPRVLL_					0	0	0		ENST00000564480.1_2_16:19729090-19729441:-|nuORF	ENST00000564480.1_2_16:19729090-19729441:-|nuORF	ENST00000564480.1_2_16:19729090-19729441:-|nuORF	MSMS	HCT116MG_D190212_S2	2	657.0110473632812	2	656.884813	1311.75507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.169	1	39.091	38.591	39.591	-0.077835								0	0	0	0.93552	1	14734	14734		13.906	0.86358	1				6409	8845	3518	3549	6261	6261					0.11166494045414765
DLTWQKLKEK	10	Unmodified	_DLTWQKLKEK_					0	0	0		nc|ENSG00000104177|Q9P2K5-3|MYEF2;nc|ENSG00000104177|Q9P2K5-2|MYEF2;MYEF2|p.A578Pfs*4|1|0.29|ENSG00000104177|chr15:48142980-48142980|T/-|frameshift_variant;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2	nc|ENSG00000104177|Q9P2K5-3|MYEF2	nc|ENSG00000104177|Q9P2K5-3|MYEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	644.8665771484375	2	644.86662	1287.71869	0.4085	0.00026343	-1.1131	-0.0007178	-0.7046	-0.00045438	644.8658389330712	39.837	0.30949	39.764	39.636	39.945	-0.072838					9	5	2	0	0	0	0.83158	1	15038	15038		9.3831	0	1	18550000			6410	1920	3519	3550	6262	6262					0.08633617148666417
DLVDNRIQLLL	11	Unmodified	_DLVDNRIQLLL_					0	0	0			REV__ENSG00000142230|ENST00000270225|SAE1	REV__ENSG00000142230|ENST00000270225|SAE1	MSMS	HCT116MG_D190212_S1	1	656.3837280273438	2	656.385177	1310.7558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.486	1	24.486	23.986	24.986	0								0	0	0	0.95196	1	8768	8768		5.2969	0.39987	1		+		6411	12351	3520	3551	6263	6263					0.11285288694489282
DLVGILLYYKW	11	Unmodified	_DLVGILLYYKW_					0	0	0			REV__ENST00000546181.2_2_12:8242708-8242954:+|nuORF	REV__ENST00000546181.2_2_12:8242708-8242954:+|nuORF	MSMS	HCT116MG_D190212_S2	2	691.8724365234375	2	691.889564	1381.76457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.303	1	37.199	36.699	37.699	-0.10318								0	0	0	0.95113	1	13978	13978		5.7319	0.83484	1		+		6412	16400	3521	3552	6264	6264					0.0889626233092713
DLVKGPPDWPP	11	Unmodified	_DLVKGPPDWPP_					0	0	0		ENSG00000196371|ENST00000358752|FUT4;nc|ENSG00000196371|P22083-2|FUT4	ENSG00000196371|ENST00000358752|FUT4	ENSG00000196371|ENST00000358752|FUT4	MSMS	HCT116MG_D190212_S3	3	610.8170776367188	2	610.819138	1219.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.821	1	31.551	31.051	32.051	-0.27028								0	0	0	0.94385	1	11640	11640		9.544	0.16085	1				6413	6064	3522	3553	6265	6265					0.022696836775139673
DLVTIKVEFEF	11	Unmodified	_DLVTIKVEFEF_					0	0	0			REV__KIF16B|p.F1272Sfs*3|1|0.36|ENSG00000089177|chr20:16273392-16273392|A/-|frameshift_variant	REV__KIF16B|p.F1272Sfs*3|1|0.36|ENSG00000089177|chr20:16273392-16273392|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	670.361572265625	2	670.360836	1338.70712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.246	1	48.881	48.381	49.381	-0.365								0	0	0	0.95113	1	18260	18260		5.7319	0	1		+		6414	10971	3523	3554	6266	6266					0.05131375334690347
DLVTNMNEIWL	11	Unmodified	_DLVTNMNEIWL_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MSMS	HCT116MG_D190212_S1	1	674.3347778320312	2	674.334295	1346.65404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.66	1	42.66	42.16	43.16	0								0	0	0	0.95196	1	16097	16097		5.2969	0	1		+		6415	11544	3524	3555	6267	6267					-0.005423257195843689
DLWDYHQHRYL	11	Unmodified	_DLWDYHQHRYL_					0	0	0		ENST00000546123.2_1_1:228362303-228363211:+|nuORF;ENST00000484749.5_1_1:228360905-228363211:+|nuORF;ENSG00000181873|ENST00000366711|IBA57	ENST00000546123.2_1_1:228362303-228363211:+|nuORF	ENST00000546123.2_1_1:228362303-228363211:+|nuORF	MSMS	HCT116MG_D190212_S4	4	773.3681640625	2	773.365307	1544.71606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.34	1	41.964	41.464	42.464	-0.37565								0	0	0	0.95636	1	15558	15558		2.9952	1.5133	1				6416	5645	3525	3556	6268	6268					-0.03450838256253519
DLWFFFFFWFL	11	Unmodified	_DLWFFFFFWFL_					0	0	0			REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF	REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF	MSMS	HCT116MG_D190212_S1	1	807.8961791992188	2	807.894649	1613.77475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.999	1	44.999	44.499	45.499	0								0	0	0	0.96149	1	17039	17039		0.30703	0	1		+		6417	14934	3526	3557	6269	6269					-0.007591299438217902
DLWKETVF	8	Unmodified	_DLWKETVF_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000488906.1_1_17:45236559-45237015:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MSMS	HCT116MG_D190212_S1	1	519.268798828125	2	519.26875	1036.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.691	1	54.691	54.191	55.191	0								0	0	0	0.41781	1	20980	20980		47.749	1.7277	1				6418	3697	3527	3558	6270	6270					0.006146516946728298
DLWKETVF	8	Unmodified	_DLWKETVF_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000488906.1_1_17:45236559-45237015:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2687377929688	2	519.26875	1036.52295	0.29252	0.0001519	-0.18703	-9.7118E-05	0.10549	5.4778E-05	519.2685963503965	54.876	0.25615	54.688	54.56	54.816	-0.18797					11	4	4	0	0	0	0.1893	1	21144	21144		75.761	0.83183	1	152810000			6419	3697	3527	3558	6271	6271					0.006146516946728298
DLWKETVF	8	Unmodified	_DLWKETVF_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000488906.1_1_17:45236559-45237015:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000494359.1_1_11:17250107-17250695:+|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	519.2688598632812	2	519.26875	1036.52295	0.27447	0.00014252	0.13187	6.8474E-05	0.40634	0.000211	519.2687048295293	54.983	0.26145	54.691	54.56	54.822	-0.2918					9	4	3	0	0	0	0.14122	1	20855	20855		85.642	0.3695	1	16237000			6420	3697	3527	3558	6272	6272					0.006146516946728298
DLWLSRGLP	9	Unmodified	_DLWLSRGLP_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MSMS	HCT116MG_D190212_S4	4	528.7647094726562	2	528.795466	1055.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.666	1	51.316	50.816	51.816	-0.35028								0	0	0	0.76575	1	19236	19236		15.847	1.0089	1		+		6421	13743	3528	3559	6273	6273					0.0508144919717779
DLWRKFVTY	9	Unmodified	_DLWRKFVTY_					0	0	0		DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.S1932Lfs*8|1|0.39|ENSG00000124721|chr6:38864002-38864002|T/-|frameshift_variant;DNAH8|p.S2184Lfs*8|1|0.39|ENSG00000124721|chr6:38872741-38872741|T/-|frameshift_variant;DNAH8|p.F2607Lfs*22|2|0.32|ENSG00000124721|chr6:38886999-38886999|T/-|frameshift_variant;DNAH8|p.F2835Lfs*10|1|0.14|ENSG00000124721|chr6:38899865-38899865|T/-|frameshift_variant;DNAH8|p.V3263Sfs*23|1|0.16|ENSG00000124721|chr6:38918047-38918048|-/A|frameshift_variant;DNAH8|p.V3263Sfs*28|1|0.47|ENSG00000124721|chr6:38918048-38918048|A/-|frameshift_variant;DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant;DNAH8|p.L1333Ffs*8|1|0.2|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;DNAH8|p.N1473Kfs*8|1|0.3|ENSG00000124721|chr6:38848663-38848664|-/A|frameshift_variant	DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	409.8876037597656	3	409.888874	1226.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.824	1	31.449	30.949	31.949	-0.37529								0	0	0	0.76818	1	11566	11566		7.609	2.3121	1				6422	708	3529	3560	6274	6274					0.04053693777063927
DLWYSKLLEY	10	Unmodified	_DLWYSKLLEY_					0	0	0			REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MSMS	HCT116MG_D190212_S1	1	665.3384399414062	2	665.339904	1328.66525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.755	1	42.755	42.255	43.255	0								0	0	0	0.94107	1	16135	16135		6.7232	0.51738	1		+		6423	17083	3530	3561	6275	6275					0.0140681964619489
DLYDSEDR	8	Unmodified	_DLYDSEDR_					0	0	0		FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant;nc|ENSG00000186628|A1L4K1-2|FSD2;ENSG00000186628|ENST00000334574|FSD2	FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant	FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	507.2956848144531	2	506.714536	1011.41452	0.32245	0.00016339	-1.378	-0.00069825	-1.0555	-0.00053486	506.7137772776781	49.184	0.20819	49.184	49.027	49.235	0					6	3	2	0	0	0	0.33109	1	18679	18679		0.6015	0.6015	1	8256800			6424	5898	3531	3562	6276	6276					-0.09073184346425478
DLYDSEDR	8	Unmodified	_DLYDSEDR_					0	0	0		FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant;nc|ENSG00000186628|A1L4K1-2|FSD2;ENSG00000186628|ENST00000334574|FSD2	FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant	FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	506.714536	1011.41452	0.31542	0.00015983	-4.545	-0.002303	-4.2296	-0.0021432	507.21375367714353	49.215	0.30353	49.061	48.935	49.238	-0.15405	-0.083165	-0.0030913	NaN	0.6015	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35380000			6425	5898	3531	3562							-0.09073184346425478
DLYDSEDR	8	Unmodified	_DLYDSEDR_					0	0	0		FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant;nc|ENSG00000186628|A1L4K1-2|FSD2;ENSG00000186628|ENST00000334574|FSD2	FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant	FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	506.714536	1011.41452	0.15321	7.7632E-05	-1.1736	-0.0005947	-1.0204	-0.00051706	507.21569703020333	49.504	0.36591	49.188	49.027	49.393	-0.31596	0.043391	0.00032535	NaN	0.6015	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5850500			6426	5898	3531	3562							-0.09073184346425478
DLYKMKHSVPQ	11	Unmodified	_DLYKMKHSVPQ_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-SECPEP	HCT116MG_D190212_S3	3	673.3063354492188	2	673.35028	1344.68601	0.81837	0.00055105	4.2162	0.002839	5.0346	0.0033901	673.3534763562575	47.195	0.15629	46.881	46.75	46.907	-0.31405					4	2	2	0	0	0	0.35938	1	17710	17710		11.495	0	1	2111600			6427	30	3532	3563	6277	6277					0.0274508675420293
DLYQLLDHLC	10	Unmodified	_DLYQLLDHLC_					0	0	0			REV__sp|P16734|CEP1_HCMVACytoplasmicenvelopmentprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL103PE=3SV=1	REV__sp|P16734|CEP1_HCMVACytoplasmicenvelopmentprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL103PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	616.8031616210938	2	616.802631	1231.59071	0.51847	0.00031979	-0.073563	-4.5374E-05	0.4449	0.00027442	616.8027039258434	23.758	0.20938	23.758	23.627	23.837	0					5	3	2	0	0	0	0.7974	1	8501	8501		12.241	0.06591	1	8315300	+		6428	17549	3533	3564	6278	6278					-0.015822664368215555
DLYVPSKPP	9	Unmodified	_DLYVPSKPP_					0	0	0			REV__ENST00000601097.1_1_19:17843916-17845234:+|nuORF	REV__ENST00000601097.1_1_19:17843916-17845234:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.27557373046875	2	508.276575	1014.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.869	1	29.513	29.013	30.013	-0.35607								0	0	0	0.74436	1	10805	10805		16.942	2.104	1		+		6429	11923	3534	3565	6279	6279					0.03190938211707817
DMDCGTYI	8	Unmodified	_DMDCGTYI_					0	0	0			REV__nc|ENSG00000136535|Q16650-2|TBR1	REV__nc|ENSG00000136535|Q16650-2|TBR1	MSMS	HCT116MG_D190212_S2	2	459.1721496582031	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.5881	1	7.3723	6.8723	7.8723	-0.21581								0	0	0	0.8837	1	2376	2376		0.79363	0	1		+		6430	12135	3535	3566	6280	6280					-0.1308575503934435
DMDKVLLKY	9	Unmodified	_DMDKVLLKY_					0	0	0		nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D	nc|ENSG00000116604|Q14814-6|MEF2D	nc|ENSG00000116604|Q14814-6|MEF2D	MSMS	HCT116MG_D190212_S2	2	562.8046875	2	562.804642	1123.59473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.436	1	42.366	41.866	42.866	-0.069984								0	0	0	0.027865	1	16062	16062		84.522	48.016	1				6431	2521	3536	3567	6281	6281					0.03787823056882189
DMEDDSWEWD	10	Unmodified	_DMEDDSWEWD_					0	0	0			REV__ENST00000487143.5_1_2:168812008-168969496:-|nuORF	REV__ENST00000487143.5_1_2:168812008-168969496:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1327.4437255859375	1	1327.44194	1326.43466	0.29896	0.00039686	0.11355	0.00015074	0.41252	0.00054759	1327.4420305946453	26.068	0.31239	25.777	25.568	25.88	-0.29022					9	5	2	0	0	0	0.89272	1	9272	9272		0.40072	0.40072	1	3628200	+		6432	14138	3537	3568	6282	6282					-0.21549801468790974
DMLIILKLGPT	11	Unmodified	_DMLIILKLGPT_					0	0	0			REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	MSMS	HCT116MG_D190212_S4	4	405.24566650390625	3	405.24567	1212.71518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.304	1	46.933	46.433	47.433	-0.37038								0	0	0	0.95954	1	17493	17493		0.45452	0	1		+		6433	13003	3538	3569	6283	6283					0.11733231050493487
DMQEEDYLN	9	Unmodified	_DMQEEDYLN_					0	0	0		nc|ENSG00000162267|Q06033-2|ITIH3;ENSG00000162267|ENST00000449956|ITIH3	nc|ENSG00000162267|Q06033-2|ITIH3	nc|ENSG00000162267|Q06033-2|ITIH3	MSMS	HCT116MG_D190212_S4	4	386.15289306640625	3	386.153616	1155.43902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.974	1	13.811	13.311	14.311	-0.16233								0	0	0	0.77018	1	4405	4405		0.26902	0	1				6434	4510	3539	3570	6284	6284					-0.1324829225520716
DMQFYAISCWY	11	Unmodified	_DMQFYAISCWY_					0	0	0			REV__SMAD4|p.E330Q|1|0.31|ENSG00000141646|chr18:51065455-51065455|G/C|missense_variant	REV__SMAD4|p.E330Q|1|0.31|ENSG00000141646|chr18:51065455-51065455|G/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	476.19830322265625	3	476.198391	1425.57334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.163	1	11.874	11.374	12.374	-0.28953								0	0	0	0.9619	1	3964	3964		0.094841	0	1		+		6435	17529	3540	3571	6285	6285					-0.12241930034133475
DMVGAGREA	9	Unmodified	_DMVGAGREA_					0	0	0		ENST00000467661.5_1_4:1985048-1988196:-|nuORF;NELFA|p.P411Rfs*67|1|0.23|ENSG00000185049|chr4:1983918-1983918|G/-|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	ENST00000467661.5_1_4:1985048-1988196:-|nuORF	ENST00000467661.5_1_4:1985048-1988196:-|nuORF	MSMS	HCT116MG_D190212_S2	2	453.2111511230469	2	453.210909	904.407265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.842	1	22.457	21.957	22.957	-0.3852								0	0	0	0.038892	1	8112	8112		74.2	38.155	1				6436	5801	3541	3572	6286	6286					-0.04876195427834773
DMVGAGREA	9	Unmodified	_DMVGAGREA_					0	0	0		ENST00000467661.5_1_4:1985048-1988196:-|nuORF;NELFA|p.P411Rfs*67|1|0.23|ENSG00000185049|chr4:1983918-1983918|G/-|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	ENST00000467661.5_1_4:1985048-1988196:-|nuORF	ENST00000467661.5_1_4:1985048-1988196:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	453.2108154296875	2	453.210909	904.407265	0.1466	6.6439E-05	-0.27622	-0.00012518	-0.12962	-5.8744E-05	453.21081555254165	22.432	0.3129	22.413	22.178	22.491	-0.018869					8	5	2	0	0	0	0.21258	1	7876	7876		39.95	16.801	1	4510500			6437	5801	3541	3572	6287	6287					-0.04876195427834773
DNACVMVL	8	Unmodified	_DNACVMVL_					0	0	0			REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant	REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	432.70172119140625	2	432.701331	863.38811	-0.051309	-2.2202E-05	0.6707	0.00029021	0.61939	0.00026801	432.70147866592635	19.73	0.20903	19.73	19.6	19.809	0					5	3	2	0	0	0	0.71835	1	6875	6875		20.871	0	1	2926500	+		6438	14360	3542	3573	6288	6288					-0.04904868043092847
DNALPYKT	8	Unmodified	_DNALPYKT_					0	0	0		nc|ENSG00000128829|Q9P2K8-3|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4	nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	MULTI-MSMS	HCT116MG_D190212_S1	1	461.2377014160156	2	461.23745	920.460347	0.22054	0.00010172	0.92042	0.00042453	1.141	0.00052626	461.23781898024953	45.827	0.41927	45.827	45.503	45.922	0					9	7	2	0	0	0	0.83066	1	17371	17371		7.9102	1.187	1	7903700			6439	768	3543	3574	6289	6289					-0.003064943735239467
DNAWSCCCWHC	11	Unmodified	_DNAWSCCCWHC_					0	0	0			REV__ENSG00000155890|ENST00000286349|TRIM42;REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	443.14093017578125	3	443.141894	1326.40385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4144	1	9.4405	8.9405	9.9405	0.026101								0	0	0	0.9619	1	2847	2847		0.094841	0.094841	1		+		6440	12711;18014	3544	3575	6290	6290					-0.24629272859988305
DNCSGGDDD	9	Unmodified	_DNCSGGDDD_					0	0	0		ENSG00000161011|ENST00000389805|SQSTM1;nc|ENSG00000161011|Q13501-2|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	MSMS	HCT116MG_D190212_S4	4	449.1290283203125	2	449.129979	896.245405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.596	1	24.328	23.828	24.828	-0.26881								0	0	0	0.77025	1	8674	8674		0	0	1				6441	4475	3545	3576	6291	6291					-0.20686828971452087
DNEFYKILE	9	Unmodified	_DNEFYKILE_					0	0	0			REV__ENST00000230565.3_1_6:46135895-46138552:-|nuORF	REV__ENST00000230565.3_1_6:46135895-46138552:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	585.7872924804688	2	585.787504	1169.56045	0.54857	0.00032134	-0.42233	-0.0002474	0.12624	7.3948E-05	585.7871498516654	55.385	0.20358	55.199	55.072	55.276	-0.18565					5	3	2	0	0	0	0.60612	1	21379	21379		10.824	2.0785	1	35503000	+		6442	14546	3546	3577	6292	6292					-0.01754301830374061
DNGGNQNG	8	Unmodified	_DNGGNQNG_					0	0	0			REV__ENSG00000047621|ENST00000261250|C12orf4	REV__ENSG00000047621|ENST00000261250|C12orf4	MULTI-MSMS	HCT116MG_D190212_S3	3	775.29736328125	1	775.296535	774.289259	0.7249	0.00056201	0.39186	0.00030381	1.1168	0.00086582	775.296700302448	56.146	0.26128	55.858	55.727	55.989	-0.28773					7	4	2	0	0	0	0.8672	1	21318	21318		2.3027	1.6124	1	7890900	+		6443	10602	3547	3578	6293	6293					-0.10691431692134756
DNGRQFDLA	9	Unmodified	_DNGRQFDLA_					0	0	0			REV__ENSG00000131981|ENST00000254301|LGALS3	REV__ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	HCT116MG_D190212_S4	4	1035.486328125	1	1035.4854	1034.47812	0.58994	0.00061087	0.10896	0.00011283	0.6989	0.0007237	1035.4854716136563	29.151	0.41533	28.811	28.626	29.041	-0.3406					15	7	3	0	0	0	0.2853	1	10518	10518		32.305	0	1	12608000	+		6444	11976	3548	3579	6294	6294					-0.03773779118660059
DNLFLIER	8	Unmodified	_DNLFLIER_					0	0	0			REV__ENST00000238477.5_1_9:101980979-101981114:-|nuORF	REV__ENST00000238477.5_1_9:101980979-101981114:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.8040771484375	2	510.279649	1018.54475	0.28216	0.00014398	0.86559	0.00044169	1.1477	0.00058567	510.2802383115593	44.595	0.31573	44.595	44.357	44.673	0					6	5	2	0	0	0	0.32441	1	16781	16781		10.824	8.5212	1	7462800	+		6445	14558	3549	3580	6295	6295					0.03621456443238458
DNQDDDSD	8	Unmodified	_DNQDDDSD_					0	0	0		nc|ENSG00000162852|Q6PJW8-2|CNST;ENSG00000162852|ENST00000366513|CNST	nc|ENSG00000162852|Q6PJW8-2|CNST	nc|ENSG00000162852|Q6PJW8-2|CNST	MSMS	HCT116MG_D190212_S3	3	462.1466064453125	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.0081926	1	0.069098	-0.4309	0.5691	0.060905								0	0	0	0.8837	1	3	3		0.79363	0	1				6446	4562	3550	3581	6296	6296					-0.18543503927901384
DPAAPTPAAP	10	Unmodified	_DPAAPTPAAP_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O;UBE2O|p.H1018Tfs*12|1|0.32|ENSG00000175931|chr17:76392008-76392008|G/-|frameshift_variant	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MSMS	HCT116MG_D190212_S3	3	454.69378662109375	2	454.229625	906.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.386	1	23.346	22.846	23.846	-0.03968								0	0	0	0.82636	1	8254	8254		25.399	2.2509	1				6447	5399	3551	3582	6297	6297					-0.012267808905903621
DPADANVRDKS	11	Unmodified	_DPADANVRDKS_					0	0	0		nc|ENSG00000159714|Q8WTX9|ZDHHC1;ENSG00000159714|ENST00000565726|ZDHHC1	nc|ENSG00000159714|Q8WTX9|ZDHHC1	nc|ENSG00000159714|Q8WTX9|ZDHHC1	MULTI-MSMS	HCT116MG_D190212_S3	3	594.2877807617188	2	594.286191	1186.55783	0.44405	0.00026389	0.70482	0.00041886	1.1489	0.00068275	594.2866165342808	16.958	0.41644	17.042	16.808	17.225	0.084467					9	7	2	0	0	0	0.69464	1	5674	5674		23.79	5.6434	1	3427600			6448	9515	3552	3583	6298	6298					-0.027987572353367796
DPADANVRDKS	11	Unmodified	_DPADANVRDKS_					0	0	0		nc|ENSG00000159714|Q8WTX9|ZDHHC1;ENSG00000159714|ENST00000565726|ZDHHC1	nc|ENSG00000159714|Q8WTX9|ZDHHC1	nc|ENSG00000159714|Q8WTX9|ZDHHC1	MULTI-MSMS	HCT116MG_D190212_S4	4	594.286376953125	2	594.286191	1186.55783	0.5165	0.00030695	0.010811	6.425E-06	0.52731	0.00031337	594.2861041824581	17.164	0.67289	16.993	16.708	17.381	-0.17047					17	12	2	0	0	0	0.7298	1	5680	5680		10.8	0.72558	1	1336000			6449	9515	3552	3583	6299	6299					-0.027987572353367796
DPAPAPTPPP	10	Unmodified	_DPAPAPTPPP_					0	0	0		ENST00000576794.5_1_17:7221531-7221930:-|nuORF	ENST00000576794.5_1_17:7221531-7221930:-|nuORF	ENST00000576794.5_1_17:7221531-7221930:-|nuORF	MSMS	HCT116MG_D190212_S4	4	480.24658203125	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.508	1	27.186	26.686	27.686	-0.32157								0	0	0	0.75886	1	9850	9850		34.102	0	1				6450	8927	3553	3584	6300	6300					-0.004902078564896328
DPAQEKLVKI	10	Unmodified	_DPAQEKLVKI_					0	0	0			REV__ENSG00000197872|ENST00000381323|CYRIA	REV__ENSG00000197872|ENST00000381323|CYRIA	MSMS	HCT116MG_D190212_S1	1	380.8907165527344	3	380.892284	1139.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7074	1	6.7074	6.2074	7.2074	0								0	0	0	0.97045	1	2020	2020		0.15932	0.064481	1		+		6451	14092	3554	3585	6301	6301					0.09078256711609356
DPCCGGCR	8	Unmodified	_DPCCGGCR_					0	0	0			REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	810.269775390625	1	810.26914	809.261863	0.8638	0.00069991	0.015362	1.2447E-05	0.87917	0.00071236	810.2690776820311	22.516	0.41708	22.516	22.324	22.741	0					12	7	2	0	0	0	0.87635	1	7972	7972		0.69038	0.69038	1	12975000	+		6452	13441	3555	3586	6302	6302					-0.1503969782003196
DPCCGGCR	8	Unmodified	_DPCCGGCR_					0	0	0			REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	810.2697143554688	1	810.26914	809.261863	0.82883	0.00067157	0.18379	0.00014892	1.0126	0.00082049	810.2692523993591	22.975	0.72961	22.975	22.741	23.471	0					18	13	2	0	0	0	0.88026	1	8203	8203		0	0	1	28315000	+		6453	13441	3555	3586	6303	6303					-0.1503969782003196
DPCCGGCR	8	Unmodified	_DPCCGGCR_					0	0	0			REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	810.3145141601562	1	810.26914	809.261863	0.96858	0.00078481	-0.24849	-0.00020134	0.72009	0.00058347	810.2689230587577	24.525	0.78062	24.145	23.874	24.655	-0.38003					29	14	3	0	0	0	0.87635	1	8794	8794		0.69038	0.69038	1	92482000	+		6454	13441	3555	3586	6304	6304					-0.1503969782003196
DPCCGGCR	8	Unmodified	_DPCCGGCR_					0	0	0			REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	810.26914	809.261863	0.8638	0.00069991	0.015362	1.2447E-05	0.87917	0.00071236	810.2690776820311	22.516	0.41708	22.516	22.324	22.741	0	-0.011946	1.0918E-05	NaN	0.69038	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12975000	+		6455	13441	3555	3586							-0.1503969782003196
DPCCGGCR	8	Unmodified	_DPCCGGCR_					0	0	0			REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	REV__VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	810.26914	809.261863	0.79322	0.00064272	-0.060158	-4.8744E-05	0.73306	0.00059398	810.2687407042773	22.777	0.4165	22.54	22.341	22.758	-0.23758	0.011946	-5.0273E-05	NaN	0.69038	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7023300	+		6456	13441	3555	3586							-0.1503969782003196
DPCHCPLL	8	Unmodified	_DPCHCPLL_					0	0	0		ENST00000393640.8_1_16:70432511-70432613:-|nuORF	ENST00000393640.8_1_16:70432511-70432613:-|nuORF	ENST00000393640.8_1_16:70432511-70432613:-|nuORF	MSMS	HCT116MG_D190212_S4	4	449.2020568847656	2	449.201499	896.388444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.218	1	58.941	58.441	59.441	-0.27731								0	0	0	0.8837	1	22279	22279		0.79363	0	1				6457	7626	3556	3587	6305	6305					-0.06389448323238867
DPDHYQAFY	9	Unmodified	_DPDHYQAFY_					0	0	0			REV__nc|ENSG00000112062|Q16539-2|MAPK14	REV__nc|ENSG00000112062|Q16539-2|MAPK14	MULTI-MSMS	HCT116MG_D190212_S2	2	578.2421264648438	2	578.240721	1154.46689	0.51897	0.00030009	2.7446	0.0015871	3.2636	0.0018871	578.2421457156229	27.092	0.31684	26.739	26.606	26.923	-0.35254					10	5	2	0	0	0	0.49914	1	9838	9838		16.942	3.0362	1	10416000	+		6458	11443	3557	3588	6306	6306					-0.10416601212818932
DPDKNIQDI	9	Unmodified	_DPDKNIQDI_					0	0	0			REV__GRM8|p.K296Nfs*2|1|0.58|ENSG00000179603|chr7:126904102-126904102|T/-|frameshift_variant	REV__GRM8|p.K296Nfs*2|1|0.58|ENSG00000179603|chr7:126904102-126904102|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2617797851562	2	529.261653	1056.50875	0.49596	0.00026249	0.14396	7.6192E-05	0.63991	0.00033868	529.2615641055775	24.992	0.62348	24.617	24.4	25.024	-0.37521					21	11	3	0	0	0	0.061422	1	8970	8970		69.105	1.0242	1	78411000	+		6459	13645	3558	3589	6307	6307					-0.01724045524269968
DPDPDPEP	8	Unmodified	_DPDPDPEP_					0	0	0		nc|ENSG00000140931|Q96MX0-2|CMTM3;ENSG00000140931|ENST00000567572|CMTM3	nc|ENSG00000140931|Q96MX0-2|CMTM3	nc|ENSG00000140931|Q96MX0-2|CMTM3	MSMS	HCT116MG_D190212_S2	2	441.179931640625	2	441.179798	880.345042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.085	1	26.733	26.233	27.233	-0.35254								0	0	0	0.8837	1	9824	9824		9.3474	0.75416	1				6460	3690	3559	3590	6308	6308					-0.09991643295177255
DPDRCESCY	9	2 Carbamidomethyl (C)	_DPDRC(Carbamidomethyl (C))ESC(Carbamidomethyl (C))Y_	DPDRC(1)ESC(1)Y		DPDRC(51)ESC(51)Y		0	2	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000489071.5_1_20:34135089-34136623:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	HCT116MG_D190212_S2	2	601.21630859375	2	601.216063	1200.41757	0.59834	0.00035973	-0.6451	-0.00038784	-0.046754	-2.8109E-05	601.2159139712984	20.218	0.36785	19.839	19.709	20.076	-0.37949					13	6	3	0	0	0	0.13706	1	7071	7071		50.855	23.971	1	27929000			6461	2924	3560	3591	6309	6309	13;14				-0.17462000555542545
DPDRCESCY	9	2 Carbamidomethyl (C)	_DPDRC(Carbamidomethyl (C))ESC(Carbamidomethyl (C))Y_					0	2	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000489071.5_1_20:34135089-34136623:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	601.216063	1200.41757	0.4781	0.00028744	0.41851	0.00025162	0.89661	0.00053906	601.2162476682665	19.887	0.20919	19.887	19.809	20.018	0	0.014419	0.00052957	NaN	50.855	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5081500			6462	2924	3560	3591			13;14				-0.17462000555542545
DPDSEILDL	9	Unmodified	_DPDSEILDL_					0	0	0			REV__nc|ENSG00000101057|P10244-2|MYBL2	REV__nc|ENSG00000101057|P10244-2|MYBL2	MULTI-MSMS	HCT116MG_D190212_S1	1	508.7432861328125	2	508.742762	1015.47097	0.49556	0.00025211	0.7458	0.00037942	1.2414	0.00063154	508.74310653893104	20.952	0.15927	20.952	20.852	21.012	0					4	2	2	0	0	0	0.2682	1	7371	7371		34.102	7.8343	1	3920000	+		6463	11112	3561	3592	6310	6310					-0.0361455650975131
DPEEAEELDE	10	Unmodified	_DPEEAEELDE_					0	0	0			REV__ENSG00000185624|ENST00000331483|P4HB	REV__ENSG00000185624|ENST00000331483|P4HB	MULTI-SECPEP	HCT116MG_D190212_S2	2	587.7325439453125	2	588.232955	1174.45136	0.47776	0.00028103	0.36896	0.00021704	0.84672	0.00049807	588.2337755375909	25.53	0.31251	25.161	25.03	25.343	-0.36914					7	5	2	0	0	0	0.30526	1	9207	9207		10.074	7.0787	1	14438000	+		6464	13852	3562	3593	6311	6311					-0.1288897731119505
DPEERREEAGV	11	Unmodified	_DPEERREEAGV_					0	0	0		ENST00000406721.7_1_9:139635361-139636622:-|nuORF	ENST00000406721.7_1_9:139635361-139636622:-|nuORF	ENST00000406721.7_1_9:139635361-139636622:-|nuORF	MSMS	HCT116MG_D190212_S3	3	643.8016967773438	2	643.802205	1285.58986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.606	1	51.294	50.794	51.794	-0.31166								0	0	0	0.95273	1	19489	19489		4.897	0.36815	1				6465	7716	3563	3594	6312	6312					-0.04151389552203
DPEIQKIKS	9	Unmodified	_DPEIQKIKS_					0	0	0		CON__ENSEMBL:ENSBTAP00000038253	CON__ENSEMBL:ENSBTAP00000038253	CON__ENSEMBL:ENSBTAP00000038253	MULTI-SECPEP	HCT116MG_D190212_S4	4	353.2308349609375	3	353.201118	1056.58152	0.12549	4.4323E-05	-0.1456	-5.1428E-05	-0.020114	-7.1044E-06	353.2011182658407	25.104	0.36406	24.824	24.486	24.85	-0.27958					10	6	2	0	0	0	0.26787	1	8820	8820		0.86438	0.86438	1	2448700		+	6466	540	3564	3595	6313	6313					0.0554970826913177
DPEKWQNQQRT	11	Unmodified	_DPEKWQNQQRT_					0	0	0			REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	358.17584228515625	4	358.175924	1428.67459	-0.12756	-4.5687E-05	-0.059071	-2.1158E-05	-0.18663	-6.6845E-05	358.1758784039258	15.762	0.3646	15.847	15.665	16.029	0.085423					11	6	3	0	0	0	0.74191	1	5209	5209		2.4348	2.4348	1	2725500	+		6467	17566	3565	3596	6314	6314					-0.022600190156026656
DPEQDLQEA	9	Unmodified	_DPEQDLQEA_					0	0	0		HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000548140.1_1_12:112605060-112605680:-|nuORF;ENST00000547085.1_1_12:112600816-112607652:-|nuORF	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	522.7276611328125	2	522.727643	1043.44073	0.38168	0.00019951	-0.065864	-3.4429E-05	0.31581	0.00016508	523.2290541534666	26.925	0.46868	26.756	26.443	26.912	-0.16933					12	8	2	0	0	0	0.24895	1	9688	9688		36.127	1.7253	1	3006600			6468	5269	3566	3597	6315	6315					-0.0792491517495364
DPERSDQRW	9	Unmodified	_DPERSDQRW_					0	0	0			REV__ENST00000502256.1_1_4:2743986-2746461:-|nuORF	REV__ENST00000502256.1_1_4:2743986-2746461:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	396.2191467285156	3	396.851259	1187.53195	-0.1548	-6.1434E-05	0.053171	2.1101E-05	-0.10163	-4.0333E-05	397.18558691793464	18.532	0.15617	18.532	18.402	18.558	0					4	2	2	0	0	0	0.26696	1	6380	6380		2.7352	2.7352	1	2232300	+		6469	16115	3567	3598	6316	6316					-0.05431606686966006
DPETLATGP	9	Unmodified	_DPETLATGP_					0	0	0		ENST00000373200.4_2_X:82765698-82765806:+|nuORF	ENST00000373200.4_2_X:82765698-82765806:+|nuORF	ENST00000373200.4_2_X:82765698-82765806:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	450.7194519042969	2	450.71909	899.423627	0.051637	2.3274E-05	0.33999	0.00015324	0.39163	0.00017652	450.71919960004107	32.433	0.62469	32.154	31.786	32.41	-0.27841					20	11	3	0	0	0	0.36396	1	11826	11826		24.674	1.5255	1	7239000			6470	7473	3568	3599	6317	6317					-0.03010790990094847
DPEVSLLKIKP	11	Unmodified	_DPEVSLLKIKP_					0	0	0			REV__tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	REV__tr|U7SSN6|U7SSN6_FUSNUglutamateformimidoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01326PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	413.7558288574219	3	413.583339	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.834	1	51.488	50.988	51.988	-0.3458								0	0	0	0.95113	1	19304	19304		2.6312	1.9336	1		+		6471	17773	3569	3600	6318	6318					0.11883385434202864
DPEVVTRPRGR	11	Unmodified	_DPEVVTRPRGR_					0	0	0		ENSG00000105137|ENST00000342784|SYDE1;nc|ENSG00000105137|Q6ZW31-2|SYDE1	ENSG00000105137|ENST00000342784|SYDE1	ENSG00000105137|ENST00000342784|SYDE1	MSMS	HCT116MG_D190212_S1	1	641.3526611328125	2	641.354742	1280.69493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.634	1	17.634	17.134	18.134	0								0	0	0	0.94538	1	6014	6014		8.7454	2.0222	1				6472	1982	3570	3601	6319	6319					0.06581196434876802
DPEYRQNLT	9	Unmodified	_DPEYRQNLT_					0	0	0		ENST00000325117.8_1_X:101802327-101802774:-|nuORF	ENST00000325117.8_1_X:101802327-101802774:-|nuORF	ENST00000325117.8_1_X:101802327-101802774:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	568.2731323242188	2	568.272552	1134.53055	0.34151	0.00019407	0.44607	0.00025349	0.78758	0.00044756	568.2727644215598	32.593	0.26063	32.373	32.213	32.474	-0.21932					10	4	3	0	0	0	0.14171	1	12081	12081		49.933	0	1	20424000			6473	7130	3571	3602	6320	6320					-0.031332407757190595
DPEYRQNLT	9	Unmodified	_DPEYRQNLT_					0	0	0		ENST00000325117.8_1_X:101802327-101802774:-|nuORF	ENST00000325117.8_1_X:101802327-101802774:-|nuORF	ENST00000325117.8_1_X:101802327-101802774:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	568.2725219726562	2	568.272552	1134.53055	0.54072	0.00030728	0.24219	0.00013763	0.78291	0.00044491	568.2726889915378	32.77	0.20772	32.39	32.26	32.468	-0.37924					6	3	2	0	0	0	0.12994	1	11960	11960		52.268	12.311	1	3780200			6474	7130	3571	3602	6321	6321					-0.031332407757190595
DPGAGGRMPP	10	Unmodified	_DPGAGGRMPP_					0	0	0			REV__ENST00000361084.9_1_1:156030999-156031116:+|nuORF	REV__ENST00000361084.9_1_1:156030999-156031116:+|nuORF	MSMS	HCT116MG_D190212_S3	3	477.7268981933594	2	477.726726	953.4389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.827	1	20.862	20.362	21.362	0.034473								0	0	0	0.78574	1	7225	7225		30.637	10.183	1		+		6475	15089	3572	3603	6322	6322					-0.039682026738887544
DPGFPGSY	8	Unmodified	_DPGFPGSY_					0	0	0		COL4A4|p.R377S|1|0.28|ENSG00000081052|chr2:227098769-227098769|G/T|missense_variant	COL4A4|p.R377S|1|0.28|ENSG00000081052|chr2:227098769-227098769|G/T|missense_variant	COL4A4|p.R377S|1|0.28|ENSG00000081052|chr2:227098769-227098769|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	839.3563232421875	1	839.35701	838.349734	0.90261	0.00075761	-0.62339	-0.00052325	0.27921	0.00023436	839.3560108434583	41.56	0.25558	41.492	41.293	41.549	-0.068199					7	4	2	0	0	0	0.60268	1	15715	15715		32.117	3.6301	1	10313000			6476	524	3573	3604	6323	6323					-0.0759071436175418
DPGLASKLMSS	11	Unmodified	_DPGLASKLMSS_					0	0	0			REV__SREBF2|p.V863M|1|0.2|ENSG00000198911|chr22:41897143-41897143|G/A|missense_variant	REV__SREBF2|p.V863M|1|0.2|ENSG00000198911|chr22:41897143-41897143|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	553.283447265625	2	553.281531	1104.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.096	1	58.096	57.596	58.596	0								0	0	0	0.95273	1	22370	22370		4.897	0	1		+		6477	17590	3574	3605	6324	6324					0.000417581547935697
DPGRPERLVFK	11	Unmodified	_DPGRPERLVFK_					0	0	0		ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	MSMS	HCT116MG_D190212_S3	3	657.3726196289062	2	657.369861	1312.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.359	1	52.052	51.552	52.552	-0.30703								0	0	0	0.94538	1	19792	19792		8.7454	0.58988	1				6478	5054	3575	3606	6325	6325					0.08131555100044352
DPKDVKERFSG	11	Unmodified	_DPKDVKERFSG_					0	0	0		nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175	nc|ENSG00000127419|Q9BSA9-2|TMEM175	nc|ENSG00000127419|Q9BSA9-2|TMEM175	MULTI-MSMS	HCT116MG_D190212_S2	2	639.3289794921875	2	639.327859	1276.64116	0.73731	0.00047139	-0.24313	-0.00015544	0.49418	0.00031595	639.3276863900599	31.606	0.8277	31.357	30.888	31.716	-0.24883					35	15	3	0	0	0	0.7093	1	11607	11607		18.373	3.1246	1	32293000			6479	2964	3576	3607	6326	6326					0.013909792125105014
DPKDVKERFSG	11	Unmodified	_DPKDVKERFSG_					0	0	0		nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175	nc|ENSG00000127419|Q9BSA9-2|TMEM175	nc|ENSG00000127419|Q9BSA9-2|TMEM175	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	639.327859	1276.64116	0.73731	0.00047139	-0.24313	-0.00015544	0.49418	0.00031595	639.3276863900599	31.606	0.8277	31.357	30.888	31.716	-0.24883	-0.039519	-0.00032145	NaN	18.373	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32293000			6480	2964	3576	3607							0.013909792125105014
DPKDVKERFSG	11	Unmodified	_DPKDVKERFSG_					0	0	0		nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175	nc|ENSG00000127419|Q9BSA9-2|TMEM175	nc|ENSG00000127419|Q9BSA9-2|TMEM175	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	639.327859	1276.64116	0.48003	0.0003069	0.036685	2.3454E-05	0.51672	0.00033035	639.3278774756066	31.711	1.1991	31.44	30.595	31.794	-0.27028	0.044176	3.6338E-05	NaN	18.373	60	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37752000			6481	2964	3576	3607							0.013909792125105014
DPKREPETL	9	Unmodified	_DPKREPETL_					0	0	0			REV__CKAP2L|p.D190N|1|0.13|ENSG00000169607|chr2:112756803-112756803|C/T|missense_variant	REV__CKAP2L|p.D190N|1|0.13|ENSG00000169607|chr2:112756803-112756803|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	362.19189453125	3	362.192623	1083.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.472	1	24.092	23.592	24.592	-0.38003								0	0	0	0.76699	1	8771	8771		11.495	2.7493	1		+		6482	10197	3577	3608	6327	6327					0.01760233746722406
DPKRLELS	8	Unmodified	_DPKRLELS_					0	0	0			REV__ENSG00000184232|ENST00000328965|OAF	REV__ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	HCT116MG_D190212_S1	1	479.25994873046875	2	479.271824	956.529095	0.28513	0.00013666	0.20023	9.5962E-05	0.48536	0.00023262	479.27180956161646	35.74	0.46782	35.74	35.578	36.046	0					14	8	3	0	0	0	0.82475	1	13365	13365		8.5933	0	1	13051000	+		6483	13790	3578	3609	6328	6328					0.04909169926179402
DPLANNRVQ	9	Unmodified	_DPLANNRVQ_					0	0	0			REV__MED12L|p.N1494Rfs*10|1|0.1|ENSG00000144893|chr3:151380219-151380220|-/GAAATAATGCATT|frameshift_variant	REV__MED12L|p.N1494Rfs*10|1|0.1|ENSG00000144893|chr3:151380219-151380220|-/GAAATAATGCATT|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	513.76953125	2	513.76998	1025.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.758	1	39.457	38.957	39.957	-0.30137								0	0	0	0.71946	1	14756	14756		18.146	1.0335	1		+		6484	17014	3579	3610	6329	6329					0.013665001523349929
DPLCMITEY	9	Unmodified	_DPLCMITEY_					0	0	0		ENSG00000162733|ENST00000367921|DDR2	ENSG00000162733|ENST00000367921|DDR2	ENSG00000162733|ENST00000367921|DDR2	MSMS	HCT116MG_D190212_S1	1	542.5564575195312	2	542.738111	1083.46167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.826	1	24.826	24.326	25.326	0								0	0	0	0.67254	1	8904	8904		21.747	3.6117	1				6485	4548	3580	3611	6330	6330					-0.07672364391305564
DPPKKKRLISL	11	Unmodified	_DPPKKKRLISL_					0	0	0		ENSG00000016082|ENST00000230658|ISL1	ENSG00000016082|ENST00000230658|ISL1	ENSG00000016082|ENST00000230658|ISL1	MSMS	HCT116MG_D190212_S2	2	432.27996826171875	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.187	1	40.114	39.614	40.614	-0.072838								0	0	0	0.95976	1	15148	15148		1.2148	0.51716	1				6486	928	3581	3612	6331	6331					0.1781017569069263
DPPQEKVP	8	Unmodified	_DPPQEKVP_					0	0	0		ENSG00000125872|ENST00000378858|LRRN4	ENSG00000125872|ENST00000378858|LRRN4	ENSG00000125872|ENST00000378858|LRRN4	MULTI-SECPEP	HCT116MG_D190212_S1	1	455.2136535644531	2	455.23745	908.460347	0.12192	5.5504E-05	0.59913	0.00027275	0.72105	0.00032825	455.2376965919649	26.579	0.31218	26.579	26.345	26.657	0					7	5	2	0	0	0	0.29766	1	9612	9612		14.582	12.522	1	7722900			6487	2911	3582	3613	6332	6332					0.002455056264693667
DPPSIEVP	8	Unmodified	_DPPSIEVP_					0	0	0			REV__nc|ENSG00000107863|Q5T5U3-3|ARHGAP21	REV__nc|ENSG00000107863|Q5T5U3-3|ARHGAP21	MSMS	HCT116MG_D190212_S4	4	427.2184753417969	2	427.218726	852.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.414	1	26.113	25.613	26.613	-0.30087								0	0	0	0.8217	1	9408	9408		20.871	1.4322	1		+		6488	9975	3583	3614	6333	6333					-0.00921585639150635
DPPVGGLY	8	Unmodified	_DPPVGGLY_					0	0	0			REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF	REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF	MSMS	HCT116MG_D190212_S3	3	409.20794677734375	2	409.208161	816.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.788	1	26.638	26.138	27.138	-0.14924								0	0	0	0.8837	1	9626	9626		5.2307	0	1		+		6489	11937	3584	3615	6334	6334					-0.013775509480183246
DPQLKSLWY	9	Unmodified	_DPQLKSLWY_					0	0	0		nc|ENSG00000164654|Q9NXC5-2|MIOS;MIOS|p.L817Ifs*5|1|0.38|ENSG00000164654|chr7:7605982-7605983|-/A|frameshift_variant;ENSG00000164654|ENST00000340080|MIOS	nc|ENSG00000164654|Q9NXC5-2|MIOS	nc|ENSG00000164654|Q9NXC5-2|MIOS	MULTI-MSMS	HCT116MG_D190212_S4	4	575.3020629882812	2	575.300581	1148.58661	0.37609	0.00021637	-0.68931	-0.00039656	-0.31322	-0.0001802	575.3006045007276	31.292	0.41301	30.922	30.61	31.023	-0.37027					14	7	3	0	0	0	0.43775	1	11345	11345		20.454	0	1	4128200			6490	4712	3585	3616	6335	6335					0.018260121317553057
DPQLKSLWY	9	Unmodified	_DPQLKSLWY_					0	0	0		nc|ENSG00000164654|Q9NXC5-2|MIOS;MIOS|p.L817Ifs*5|1|0.38|ENSG00000164654|chr7:7605982-7605983|-/A|frameshift_variant;ENSG00000164654|ENST00000340080|MIOS	nc|ENSG00000164654|Q9NXC5-2|MIOS	nc|ENSG00000164654|Q9NXC5-2|MIOS	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	575.300581	1148.58661	0.576	0.00033137	-3.1599	-0.0018179	-2.5839	-0.0014865	575.2987306247089	30.789	0.31223	30.789	30.711	31.023	0	-0.064531	0.00036978	NaN	20.454	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6146700			6491	4712	3585	3616							0.018260121317553057
DPRGLHVGP	9	Unmodified	_DPRGLHVGP_					0	0	0			REV__nc|ENSG00000143398|Q99755-4|PIP5K1A	REV__nc|ENSG00000143398|Q99755-4|PIP5K1A	MSMS	HCT116MG_D190212_S3	3	474.2548828125	2	474.256508	946.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.121	1	28.899	28.399	29.399	-0.22195								0	0	0	0.76781	1	10567	10567		8.5933	2.2392	1		+		6492	12389	3586	3617	6336	6336					0.023074363318073665
DPRLNLDEL	9	Unmodified	_DPRLNLDEL_					0	0	0			REV__ENST00000462616.1_1_9:139310627-139310981:+|nuORF	REV__ENST00000462616.1_1_9:139310627-139310981:+|nuORF	MSMS	HCT116MG_D190212_S2	2	362.192138671875	3	362.192623	1083.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.106	1	24.731	24.231	25.231	-0.37521								0	0	0	0.76677	1	9027	9027		12.241	0	1		+		6493	13072	3587	3618	6337	6337					0.017602337466996687
DPSCPNGSCW	10	Unmodified	_DPSCPNGSCW_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-2|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MSMS	HCT116MG_D190212_S4	4	533.1904907226562	2	533.191859	1064.36917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.113	1	35.728	35.228	36.228	-0.38558								0	0	0	0.94107	1	13203	13203		6.7232	1.9672	1				6494	3956	3588	3619	6338	6338					-0.1604444940483063
DPSLATFV	8	Unmodified	_DPSLATFV_					0	0	0			REV__ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	REV__ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	425.7522277832031	2	425.221268	848.427984	0.44325	0.00018848	0.24025	0.00010216	0.68349	0.00029064	425.221429365812	48.705	0.72977	48.389	48.14	48.87	-0.31596					15	13	2	0	0	0	0.32538	1	18265	18265		9.3474	3.587	1	3955600	+		6495	11992	3589	3620	6339	6339					-0.002292817765237487
DPSRSPGKGSP	11	Unmodified	_DPSRSPGKGSP_					0	0	0		ENST00000389916.4_1_17:72350510-72351539:+|nuORF	ENST00000389916.4_1_17:72350510-72351539:+|nuORF	ENST00000389916.4_1_17:72350510-72351539:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	542.77978515625	2	542.772719	1083.53089	0.41584	0.00022571	0.47418	0.00025737	0.89003	0.00048308	542.7727261730245	23.245	0.97768	23.205	22.73	23.708	-0.03968					43	18	4	0	0	0	0.35051	1	8394	8394		12.873	12.873	1	16209000			6496	7598	3590	3621	6340	6340					-0.007538210558550418
DPSSEGVLPS	10	Unmodified	_DPSSEGVLPS_					0	0	0		ZXDC|p.G803S|1|0.37|ENSG00000070476|chr3:126439715-126439715|C/T|missense_variant	ZXDC|p.G803S|1|0.37|ENSG00000070476|chr3:126439715-126439715|C/T|missense_variant	ZXDC|p.G803S|1|0.37|ENSG00000070476|chr3:126439715-126439715|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	493.7675476074219	2	494.235104	986.455655	0.51042	0.00025227	0.37094	0.00018333	0.88136	0.0004356	494.235384526937	29.318	0.41084	29.005	28.866	29.277	-0.31265					11	7	2	0	0	0	0.28496	1	10802	10802		13.906	4.5586	1	9015200			6497	18740	3591	3622	6341	6341					-0.03811423306933648
DPSVLPVKRG	10	Unmodified	_DPSVLPVKRG_					0	0	0			REV__ENSG00000091986|ENST00000206423|CCDC80	REV__ENSG00000091986|ENST00000206423|CCDC80	MSMS	HCT116MG_D190212_S3	3	534.3118286132812	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.962	1	35.662	35.162	36.162	-0.30042								0	0	0	0.82636	1	13271	13271		25.399	10.561	1		+		6498	11009	3592	3623	6342	6342					0.08285120742948493
DPTFQLASGSR	11	Unmodified	_DPTFQLASGSR_					0	0	0			REV__ENST00000588870.1_1_17:40811874-40817754:+|nuORF	REV__ENST00000588870.1_1_17:40811874-40817754:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	589.2637939453125	2	589.793652	1177.57275	0.71122	0.00041947	-0.0020627	-1.2166E-06	0.70916	0.00041826	589.7932964113903	18.058	0.72993	18.058	17.568	18.298	0					22	13	3	0	0	0	0.36447	1	6007	6007		4.5289	3.047	1	5073000	+		6499	16671	3593	3624	6343	6343					-0.008932653673355162
DPTGDCEEGP	10	Unmodified	_DPTGDCEEGP_					0	0	0		ENST00000495417.5_1_19:55106262-55106361:+|nuORF	ENST00000495417.5_1_19:55106262-55106361:+|nuORF	ENST00000495417.5_1_19:55106262-55106361:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.76953125	2	510.184754	1018.35496	0.23061	0.00011765	2.6439	0.0013489	2.8745	0.0014665	510.1854547811291	30.869	0.20744	30.601	30.508	30.716	-0.26704					5	3	2	0	0	0	0.30812	1	11347	11347		0.40072	0	1	4700600			6500	8380	3594	3625	6344	6344					-0.15348823352098862
DPTTPFHLSPG	11	Unmodified	_DPTTPFHLSPG_					0	0	0		ENST00000486327.6_1_19:47880370-47884327:+|nuORF	ENST00000486327.6_1_19:47880370-47884327:+|nuORF	ENST00000486327.6_1_19:47880370-47884327:+|nuORF	MSMS	HCT116MG_D190212_S4	4	584.7826538085938	2	584.785296	1167.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.994	1	22.756	22.256	23.256	-0.23758								0	0	0	0.85129	1	8028	8028		26.268	2.2476	1				6501	8295	3595	3626	6345	6345					-0.021037662532989998
DPTWPHSRTP	10	Unmodified	_DPTWPHSRTP_					0	0	0			REV__nc|ENSG00000135341|O43318-4|MAP3K7	REV__nc|ENSG00000135341|O43318-4|MAP3K7	MSMS	HCT116MG_D190212_S1	1	597.2880859375	2	597.288537	1192.56252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.744	1	31.744	31.244	32.244	0								0	0	0	0.87399	1	11690	11690		19.257	0	1		+		6502	12086	3596	3627	6346	6346					-0.026058283018983275
DPVDQGRKTK	10	Unmodified	_DPVDQGRKTK_					0	0	0			REV__ENST00000406333.1_1_6:119590382-119590640:-|nuORF	REV__ENST00000406333.1_1_6:119590382-119590640:-|nuORF	MSMS	HCT116MG_D190212_S2	2	381.8749084472656	3	381.875405	1142.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.867	1	64.754	64.254	65.254	-0.11256								0	0	0	0.96804	1	25069	25069		0.69767	0.29695	1		+		6503	15412	3597	3628	6347	6347					0.03878727386609171
DPVLARCCTC	10	Unmodified	_DPVLARCCTC_					0	0	0		ENST00000457336.1_1_2:113402667-113403246:-|nuORF	ENST00000457336.1_1_2:113402667-113403246:-|nuORF	ENST00000457336.1_1_2:113402667-113403246:-|nuORF	MSMS	HCT116MG_D190212_S4	4	540.7371826171875	2	540.73538	1079.45621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.817	1	51.47	50.97	51.97	-0.34735								0	0	0	0.95648	1	19297	19297		3.2813	0.70383	1				6504	8032	3598	3629	6348	6348					-0.08034366454739938
DPVLPQLT	8	Unmodified	_DPVLPQLT_					0	0	0			REV__BCL2L1|p.E202Dfs*39|1|0.07|ENSG00000171552|chr20:31666045-31666046|-/CACCACA|frameshift_variant	REV__BCL2L1|p.E202Dfs*39|1|0.07|ENSG00000171552|chr20:31666045-31666046|-/CACCACA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	441.7494201660156	2	441.750193	881.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.491	1	49.129	48.629	49.629	-0.36213								0	0	0	0.8837	1	18359	18359		7.2892	2.5332	1		+		6505	10035	3599	3630	6349	6349					0.04034980148901468
DPVPEELQNGE	11	Unmodified	_DPVPEELQNGE_					0	0	0		ENSG00000113805|ENST00000263665|CNTN3	ENSG00000113805|ENST00000263665|CNTN3	ENSG00000113805|ENST00000263665|CNTN3	MULTI-SECPEP	HCT116MG_D190212_S2	2	614.2467041015625	2	613.780407	1225.54626	0.56607	0.00034744	-0.10906	-6.6941E-05	0.45701	0.0002805	613.7803875917205	25.893	0.25951	25.524	25.446	25.706	-0.36914					6	4	2	0	0	0	0.35938	1	9391	9391		4.5289	0	1	8893400			6506	2405	3600	3631	6350	6350					-0.057489990493195364
DPVVTPPP	8	Unmodified	_DPVVTPPP_					0	0	0			REV__FER1L6|p.G1237Afs*10|1|0.35|ENSG00000214814|chr8:124067790-124067790|A/-|frameshift_variant	REV__FER1L6|p.G1237Afs*10|1|0.35|ENSG00000214814|chr8:124067790-124067790|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	411.22235107421875	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.954	1	31.68	31.18	32.18	-0.27331								0	0	0	0.8837	1	11693	11693		4.756	1.8668	1		+		6507	14270	3601	3632	6351	6351					0.01567022086101133
DQAGGAPYV	9	Unmodified	_DQAGGAPYV_					0	0	0			REV__TAF1C|p.P454Lfs*14|1|0.28|ENSG00000103168|chr16:84181068-84181068|G/-|frameshift_variant;REV__TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant	REV__TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	439.2063293457031	2	439.20615	876.397747	0.06935	3.0459E-05	0.0061043	2.6811E-06	0.075454	3.314E-05	439.2059733218276	30.995	0.26075	30.735	30.604	30.865	-0.26071					7	4	2	0	0	0	0.1754	1	11315	11315		43.858	7.8141	1	8018400	+		6508	17614;11179	3602	3633	6352	6352					-0.04539640441726078
DQARPIPF	8	Unmodified	_DQARPIPF_					0	0	0			REV__ENST00000485803.5_1_1:38462874-38463066:-|nuORF	REV__ENST00000485803.5_1_1:38462874-38463066:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	472.2538757324219	2	472.253434	942.492316	0.29689	0.00014021	0.22363	0.00010561	0.52052	0.00024582	472.2534735833749	34.571	0.25979	34.571	34.389	34.649	0					6	4	2	0	0	0	0.3916	1	12834	12834		50.855	6.448	1	24300000	+		6509	15984	3603	3634	6353	6353					0.018769181002653568
DQARPIPF	8	Unmodified	_DQARPIPF_					0	0	0			REV__ENST00000485803.5_1_1:38462874-38463066:-|nuORF	REV__ENST00000485803.5_1_1:38462874-38463066:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	472.2543640136719	2	472.253434	942.492316	0.44471	0.00021002	0.10632	5.0209E-05	0.55103	0.00026022	472.253473416616	34.686	0.25866	34.528	34.399	34.657	-0.15834					10	4	3	0	0	0	0.48901	1	12932	12932		42.095	6.0504	1	46387000	+		6510	15984	3603	3634	6354	6354					0.018769181002653568
DQARPIPF	8	Unmodified	_DQARPIPF_					0	0	0			REV__ENST00000485803.5_1_1:38462874-38463066:-|nuORF	REV__ENST00000485803.5_1_1:38462874-38463066:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	472.253434	942.492316	0.29689	0.00014021	0.22363	0.00010561	0.52052	0.00024582	472.2534735833749	34.571	0.25979	34.571	34.389	34.649	0	0.021737	3.1795E-05	NaN	50.855	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24300000	+		6511	15984	3603	3634							0.018769181002653568
DQARPIPF	8	Unmodified	_DQARPIPF_					0	0	0			REV__ENST00000485803.5_1_1:38462874-38463066:-|nuORF	REV__ENST00000485803.5_1_1:38462874-38463066:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	472.253434	942.492316	0.44471	0.00021002	0.10632	5.0209E-05	0.55103	0.00026022	472.253473416616	34.686	0.25866	34.528	34.399	34.657	-0.15834	-0.021737	-7.9007E-05	NaN	50.855	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46387000	+		6512	15984	3603	3634							0.018769181002653568
DQDEIQRLP	9	Unmodified	_DQDEIQRLP_					0	0	0		CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant;CTSA|p.F173Pfs*39|1|0.09|ENSG00000064601|chr20:45892795-45892796|TT/-|frameshift_variant;CTSA|p.C331Afs*36|1|0.47|ENSG00000064601|chr20:45895029-45895029|C/-|frameshift_variant;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA	CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant	CTSA|p.Y115Ifs*5|1|0.34|ENSG00000064601|chr20:45892305-45892305|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	557.2811279296875	2	557.280377	1112.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.994	1	41.617	41.117	42.117	-0.37637								0	0	0	0.7696	1	15417	15417		2.3027	0	1				6513	615	3604	3635	6355	6355					-0.005569542586727039
DQDHSALAGPP	11	Unmodified	_DQDHSALAGPP_					0	0	0			REV__nc|ENSG00000100842|O43281-3|EFS	REV__nc|ENSG00000100842|O43281-3|EFS	MULTI-SECPEP	HCT116MG_D190212_S4	4	553.77783203125	2	554.256902	1106.49925	0.3165	0.00017542	-0.24546	-0.00013605	0.071041	3.9375E-05	554.7583180592687	32.095	0.15577	31.72	31.59	31.745	-0.37529					4	2	2	0	0	0	0.3177	1	11653	11653		15.248	0	1	3673700	+		6514	11103	3605	3636	6356	6356					-0.049738138098064155
DQDKPPGQLP	10	Unmodified	_DQDKPPGQLP_					0	0	0			REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	547.778076171875	2	547.77747	1093.54039	0.50811	0.00027833	-0.80567	-0.00044133	-0.29756	-0.000163	547.7772253681047	38.07	0.19448	37.769	37.691	37.885	-0.30137					5	3	2	0	0	0	0.67188	1	14121	14121		22.736	1.1993	1	3322600	+		6515	10174	3606	3637	6357	6357					-0.0026405277033063612
DQERERQWR	9	Unmodified	_DQERERQWR_					0	0	0		LRRC59|p.R161W|1|0.25|ENSG00000108829|chr17:50388081-50388081|G/A|missense_variant	LRRC59|p.R161W|1|0.25|ENSG00000108829|chr17:50388081-50388081|G/A|missense_variant	LRRC59|p.R161W|1|0.25|ENSG00000108829|chr17:50388081-50388081|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	434.88250732421875	3	434.881441	1301.62249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.732	1	9.7646	9.2646	10.265	0.032559								0	0	0	0.77008	1	2940	2940		0.26902	0	1				6516	9307	3607	3638	6358	6358					-0.016251376386890115
DQFVLTRPGP	10	Unmodified	_DQFVLTRPGP_					0	0	0			REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	377.2048645019531	3	377.204862	1128.59276	0.035374	1.3343E-05	-0.11876	-4.4798E-05	-0.083388	-3.1454E-05	377.2047554304936	24.228	0.26024	23.848	23.718	23.979	-0.38003					10	4	3	0	0	0	0.56431	1	8675	8675		22.109	4.6662	1	51464000	+		6517	16639	3608	3639	6359	6359					0.03360530363283942
DQFVLTRPGP	10	Unmodified	_DQFVLTRPGP_					0	0	0			REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	377.204862	1128.59276	0.035374	1.3343E-05	-0.11876	-4.4798E-05	-0.083388	-3.1454E-05	377.2047554304936	24.228	0.26024	23.848	23.718	23.979	-0.38003	0.1496	-7.3103E-05	NaN	22.109	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51464000	+		6518	16639	3608	3639							0.03360530363283942
DQGAPGSVGPA	11	Unmodified	_DQGAPGSVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MSMS	HCT116MG_D190212_S3	3	478.2275390625	2	478.227613	954.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.461	1	22.442	21.942	22.942	-0.018869								0	0	0	0.8267	1	7881	7881		29.437	2.5535	1				6519	4715	3609	3640	6360	6360					-0.038368703842706964
DQGAPGSVGPA	11	Unmodified	_DQGAPGSVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	478.2279357910156	2	478.227613	954.440674	0.37775	0.00018065	-0.19637	-9.391E-05	0.18138	8.6741E-05	478.22758056931224	22.463	0.62508	22.235	21.988	22.613	-0.22777					14	11	2	0	0	0	0.59843	1	7794	7794		35.612	11.822	1	2910700			6520	4715	3609	3640	6361	6361					-0.038368703842706964
DQHQQLQYQQP	11	Unmodified	_DQHQQLQYQQP_					0	0	0		nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-2|WNK1	nc|ENSG00000060237|Q9H4A3-2|WNK1	MULTI-SECPEP	HCT116MG_D190212_S2	2	471.256103515625	3	471.556623	1411.64804	0.20293	9.5691E-05	-0.1676	-7.9033E-05	0.035326	1.6658E-05	471.5564847843331	20.483	0.2137	20.103	19.969	20.183	-0.37949					5	3	2	0	0	0	0.36593	1	7163	7163		0.45452	0	1	6908600			6521	1107	3610	3641	6362	6362					-0.04131707906913107
DQHSQGTGAY	10	Unmodified	_DQHSQGTGAY_					0	0	0		nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-MSMS	HCT116MG_D190212_S1	1	531.885009765625	2	532.225602	1062.43665	0.47385	0.00025219	-0.075512	-4.0189E-05	0.39834	0.00021201	532.2254675687816	17.124	0.26071	17.124	16.994	17.255	0					6	4	2	0	0	0	0.28012	2	5800	5800;5831		52.268	8.496	1	6570600			6522	4523	3611	3642	6363;6364	6363					-0.09206959877997178
DQHSQGTGAY	10	Unmodified	_DQHSQGTGAY_					0	0	0		nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-MSMS	HCT116MG_D190212_S2	2	532.2254638671875	2	532.225602	1062.43665	0.45211	0.00024062	-0.17025	-9.061E-05	0.28186	0.00015001	532.2254555131582	17.562	0.31321	17.213	17.082	17.395	-0.34933					13	5	3	0	0	0	0.12519	1	5986	5986		69.105	2.6482	1	33920000			6523	4523	3611	3642	6365	6365					-0.09206959877997178
DQIFDFVE	8	Unmodified	_DQIFDFVE_					0	0	0			REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	506.7346496582031	2	506.73474	1011.45493	0.40601	0.00020574	-0.20843	-0.00010562	0.19758	0.00010012	506.7345569423008	27.821	0.41151	27.479	27.243	27.655	-0.34201					16	7	4	0	0	0	0.71258	1	10137	10137		21.537	21.537	1	32982000	+		6524	17708	3612	3643	6366	6366					-0.050342179560061595
DQIFDFVE	8	Unmodified	_DQIFDFVE_					0	0	0			REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	506.7345886230469	2	506.73474	1011.45493	0.44065	0.00022329	-0.38855	-0.00019689	0.0521	2.6401E-05	506.73434413779205	27.691	0.36396	27.502	27.361	27.725	-0.18847					12	6	3	0	0	0	0.71258	1	10008	10008		21.537	21.537	1	20411000	+		6525	17708	3612	3643	6367	6367					-0.050342179560061595
DQIFDFVE	8	Unmodified	_DQIFDFVE_					0	0	0			REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	506.73388671875	2	506.73474	1011.45493	0.20435	0.00010355	-0.10277	-5.2078E-05	0.10158	5.1475E-05	506.73450081843436	27.919	0.36361	27.598	27.45	27.814	-0.32157					14	6	3	0	0	0	0.65382	1	10025	10025		27.629	27.629	1	8870000	+		6526	17708	3612	3643	6368	6368					-0.050342179560061595
DQIFDFVE	8	Unmodified	_DQIFDFVE_					0	0	0			REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	506.73474	1011.45493	0.40601	0.00020574	-0.20843	-0.00010562	0.19758	0.00010012	506.7345569423008	27.821	0.41151	27.479	27.243	27.655	-0.34201	-0.047444	4.8677E-05	NaN	27.629	16	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32982000	+		6527	17708	3612	3643							-0.050342179560061595
DQIFDFVE	8	Unmodified	_DQIFDFVE_					0	0	0			REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	506.73474	1011.45493	0.44065	0.00022329	-0.38855	-0.00019689	0.0521	2.6401E-05	506.73434413779205	27.691	0.36396	27.502	27.361	27.725	-0.18847	-0.023986	-0.00013388	NaN	27.629	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20411000	+		6528	17708	3612	3643							-0.050342179560061595
DQIFDFVE	8	Unmodified	_DQIFDFVE_					0	0	0			REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	506.73474	1011.45493	0.20435	0.00010355	-0.10277	-5.2078E-05	0.10158	5.1475E-05	506.73450081843436	27.919	0.36361	27.598	27.45	27.814	-0.32157	0.07143	0.00015576	NaN	27.629	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8870000	+		6529	17708	3612	3643							-0.050342179560061595
DQIHKNGA	8	Unmodified	_DQIHKNGA_					0	0	0			REV__ZNF28|p.K137Q|1|0.33|ENSG00000198538|chr19:52801436-52801436|T/G|missense_variant	REV__ZNF28|p.K137Q|1|0.33|ENSG00000198538|chr19:52801436-52801436|T/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	441.7189025878906	2	441.725041	881.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.024	1	15.69	15.19	16.19	-0.33451								0	0	0	0.84187	1	5365	5365		19.257	0	1		+		6530	18076	3613	3644	6369	6369					-0.009931294562534276
DQIMMMSI	8	Unmodified	_DQIMMMSI_					0	0	0		ENST00000346213.8_1_17:40277044-40277497:-|nuORF	ENST00000346213.8_1_17:40277044-40277497:-|nuORF	ENST00000346213.8_1_17:40277044-40277497:-|nuORF	MSMS	HCT116MG_D190212_S3	3	484.7159423828125	2	484.716124	967.417695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.504	1	39.203	38.703	39.703	-0.30137								0	0	0	0.72655	1	14666	14666		28.487	0	1				6531	7261	3614	3645	6370	6370					-0.06731672089279073
DQINEKFQQ	9	Unmodified	_DQINEKFQQ_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	HCT116MG_D190212_S3	3	575.28125	2	575.280377	1148.5462	0.57172	0.0003289	0.19157	0.0001102	0.76329	0.00043911	575.2802596074171	25.751	1.9274	25.623	24.349	26.276	-0.12795					106	36	4	0	0	0	0.35842	1	8889	8889		24.991	2.2547	1	47068000	+		6532	13653	3615	3646	6371	6371					-0.022129542586753814
DQKKELRGEY	10	Unmodified	_DQKKELRGEY_					0	0	0			REV__ZNF354A|p.T185Nfs*6|1|0.36|ENSG00000169131|chr5:178713324-178713325|-/T|frameshift_variant	REV__ZNF354A|p.T185Nfs*6|1|0.36|ENSG00000169131|chr5:178713324-178713325|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	633.3281860351562	2	633.327859	1264.64116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.687	1	21.687	21.187	22.187	0								0	0	0	0.81962	1	7641	7641		26.268	0.24744	1		+		6533	13225	3616	3647	6372	6372					0.01942979212526552
DQLDNSDECLS	11	Unmodified	_DQLDNSDECLS_					0	0	0			REV__MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	REV__MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	619.74560546875	2	619.745707	1237.47686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.086	1	34.928	34.428	35.428	-0.15834								0	0	0	0.93456	1	13076	13076		14.405	6.2499	1		+		6534	13809	3617	3648	6373	6373					-0.13237826060390034
DQLGERESYYH	11	Unmodified	_DQLGERESYYH_					0	0	0			REV__nc|ENSG00000061918|Q02153-2|GUCY1B1	REV__nc|ENSG00000061918|Q02153-2|GUCY1B1	MSMS	HCT116MG_D190212_S4	4	698.807373046875	2	698.81003	1395.60551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.066	1	18.879	18.379	19.379	-0.18674								0	0	0	0.93295	1	6442	6442		15.248	9.0427	1		+		6535	10673	3618	3649	6374	6374					-0.07647103035128566
DQLKRNHLRVV	11	Unmodified	_DQLKRNHLRVV_					0	0	0		ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	MSMS	HCT116MG_D190212_S1	1	689.405517578125	2	689.407309	1376.80007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.867	1	27.867	27.367	28.367	0								0	0	0	0.9465	1	10130	10130		8.1555	0	1				6536	6642	3619	3650	6375	6375					0.12673737631280346
DQLLFPKRRV	10	Unmodified	_DQLLFPKRRV_					0	0	0			REV__OR6N2|p.F28Lfs*107|1|0.23|ENSG00000188340|chr1:158777552-158777552|A/-|frameshift_variant	REV__OR6N2|p.F28Lfs*107|1|0.23|ENSG00000188340|chr1:158777552-158777552|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	636.3847045898438	2	636.382771	1270.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.464	1	53.161	52.661	53.661	-0.30305								0	0	0	0.94551	1	20236	20236		5.7319	0.83484	1		+		6537	17375	3620	3651	6376	6376					0.1264444934236053
DQLNKETEDY	10	Unmodified	_DQLNKETEDY_					0	0	0		nc|ENSG00000162852|Q6PJW8-2|CNST;ENSG00000162852|ENST00000366513|CNST	nc|ENSG00000162852|Q6PJW8-2|CNST	nc|ENSG00000162852|Q6PJW8-2|CNST	MULTI-SECPEP	HCT116MG_D190212_S2	2	628.2208862304688	2	627.777864	1253.54118	0.3747	0.00023523	-2.46	-0.0015443	-2.0853	-0.0013091	627.7760717485063	15.335	0.2608	15.008	14.81	15.071	-0.32684					7	4	3	0	0	0	0.30239	1	5108	5108		4.897	0	1	2704900			6538	4562	3621	3652	6377	6377					-0.07545302911921681
DQLQQAQPTP	10	Unmodified	_DQLQQAQPTP_					0	0	0			REV__TINF2|p.G337Efs*4|1|0.25|ENSG00000092330|chr14:24240470-24240470|C/-|frameshift_variant	REV__TINF2|p.G337Efs*4|1|0.25|ENSG00000092330|chr14:24240470-24240470|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	563.2807006835938	2	563.280377	1124.5462	0.21704	0.00012226	0.15905	8.959E-05	0.37609	0.00021185	563.2804292700814	18.822	0.83177	18.641	18.251	19.083	-0.18052					34	15	4	0	0	0	0.35312	1	6288	6288		45.74	15.899	1	34824000	+		6539	11016	3622	3653	6378	6378					-0.011089542586660173
DQLQQAQPTP	10	Unmodified	_DQLQQAQPTP_					0	0	0			REV__TINF2|p.G337Efs*4|1|0.25|ENSG00000092330|chr14:24240470-24240470|C/-|frameshift_variant	REV__TINF2|p.G337Efs*4|1|0.25|ENSG00000092330|chr14:24240470-24240470|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	563.280377	1124.5462	0.37237	0.00020975	-0.38609	-0.00021748	-0.013717	-7.7267E-06	563.2801311926761	18.988	0.15615	19.057	18.927	19.083	0.069159	0.20614	-0.00059721	NaN	45.74	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	928970	+		6540	11016	3622	3653							-0.011089542586660173
DQLREPYHQP	10	Unmodified	_DQLREPYHQP_					0	0	0		ENST00000243077.7_1_12:57574146-57574468:+|nuORF	ENST00000243077.7_1_12:57574146-57574468:+|nuORF	ENST00000243077.7_1_12:57574146-57574468:+|nuORF	MSMS	HCT116MG_D190212_S4	4	641.814697265625	2	641.812376	1281.6102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.231	1	21.022	20.522	21.522	-0.20959								0	0	0	0.90291	1	7317	7317		15.248	0.8431	1				6541	6781	3623	3654	6379	6379					-0.01934174101734243
DQLRGAGFG	9	Unmodified	_DQLRGAGFG_					0	0	0		ENSG00000145247|ENST00000508632|OCIAD2	ENSG00000145247|ENST00000508632|OCIAD2	ENSG00000145247|ENST00000508632|OCIAD2	MULTI-MSMS	HCT116MG_D190212_S3	3	460.7326354980469	2	460.732866	919.451179	0.4174	0.00019231	-0.50508	-0.00023271	-0.087675	-4.0395E-05	460.73258848255625	15.345	0.26025	15.428	15.35	15.61	0.083271					5	4	2	0	0	0	0.63131	1	5051	5051		9.3831	1.473	1	811480			6542	3902	3624	3655	6380	6380					-0.011768429391850077
DQLRLPFVASP	11	Unmodified	_DQLRLPFVASP_					0	0	0			REV__ENST00000300853.7_1_19:45926543-45927212:-|nuORF	REV__ENST00000300853.7_1_19:45926543-45927212:-|nuORF	MSMS	HCT116MG_D190212_S1	1	621.7230224609375	2	621.845687	1241.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.58	1	21.58	21.08	22.08	0								0	0	0	0.9387	1	7598	7598		12.241	2.8575	1		+		6543	14783	3625	3656	6381	6381					0.06565061460173638
DQLTVNPV	8	Unmodified	_DQLTVNPV_					0	0	0			REV__ENSG00000109943|ENST00000227348|CRTAM	REV__ENSG00000109943|ENST00000227348|CRTAM	MULTI-MSMS	HCT116MG_D190212_S2	2	443.2373046875	2	443.23745	884.460347	0.15916	7.0545E-05	-0.17575	-7.79E-05	-0.016592	-7.3543E-06	443.2372879791679	27.8	0.4112	27.458	27.347	27.758	-0.34201					10	7	2	0	0	0	0.34844	1	10131	10131		54.774	2.5052	1	24485000	+		6544	11387	3626	3657	6382	6382					0.013495056264787308
DQLTVNPV	8	Unmodified	_DQLTVNPV_					0	0	0			REV__ENSG00000109943|ENST00000227348|CRTAM	REV__ENSG00000109943|ENST00000227348|CRTAM	MULTI-MSMS	HCT116MG_D190212_S4	4	443.2377624511719	2	443.23745	884.460347	0.28767	0.00012751	0.87257	0.00038675	1.1602	0.00051426	443.2374509736866	27.891	0.61371	27.569	27.2	27.814	-0.32157					21	11	3	0	0	0	0.44484	1	10018	10018		46.021	2.1627	1	8697900	+		6545	11387	3626	3657	6383	6383					0.013495056264787308
DQMDEDDESDE	11	Unmodified	_DQMDEDDESDE_					0	0	0			REV__ENSG00000110200|ENST00000227618|ANAPC15	REV__ENSG00000110200|ENST00000227618|ANAPC15	MSMS	HCT116MG_D190212_S1	1	443.14093017578125	3	443.141993	1326.40415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.462	1	13.462	12.962	13.962	0								0	0	0	0.96194	1	4374	4374		0.073264	0.073264	1		+		6546	11395	3627	3658	6384	6384					-0.24599624644474716
DQQLLQGP	8	Unmodified	_DQQLLQGP_					0	0	0		PPARGC1B|p.R538Q|1|0.33|ENSG00000155846|chr5:149833686-149833686|G/A|missense_variant	PPARGC1B|p.R538Q|1|0.33|ENSG00000155846|chr5:149833686-149833686|G/A|missense_variant	PPARGC1B|p.R538Q|1|0.33|ENSG00000155846|chr5:149833686-149833686|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	449.73516845703125	2	449.735074	897.455596	0.21565	9.6984E-05	-0.65802	-0.00029593	-0.44237	-0.00019895	449.73496411602656	23.397	0.62626	23.149	22.905	23.532	-0.24775					15	11	2	0	0	0	0.71077	1	8243	8243		21.747	4.6338	1	1798800			6547	9765	3628	3659	6385	6385					0.0027662148371518924
DQQRYGALHEA	11	Unmodified	_DQQRYGALHEA_					0	0	0			REV__ENSG00000247746|ENST00000500968|USP51	REV__ENSG00000247746|ENST00000500968|USP51	MSMS	HCT116MG_D190212_S4	4	644.3052368164062	2	644.307458	1286.60036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.786	1	21.568	21.068	22.068	-0.21832								0	0	0	0.93202	1	7541	7541		15.739	2.866	1		+		6548	14369	3629	3660	6386	6386					-0.03147362107097251
DQQVWKIEDVF	11	Unmodified	_DQQVWKIEDVF_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MSMS	HCT116MG_D190212_S1	1	703.8539428710938	2	703.851167	1405.68778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.315	1	33.315	32.815	33.815	0								0	0	0	0.95273	1	12325	12325		4.897	0	1				6549	2603	3630	3661	6387	6387					0.0011641904379757761
DQSNPPLKN	9	Unmodified	_DQSNPPLKN_					0	0	0			REV__ENST00000476385.1_1_3:142660339-142660513:+|nuORF	REV__ENST00000476385.1_1_3:142660339-142660513:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	506.7147521972656	2	506.756538	1011.49852	0.36021	0.00018254	0.048416	2.4535E-05	0.40862	0.00020707	506.7565015599588	22.809	0.20871	22.809	22.689	22.898	0					5	3	2	0	0	0	0.23771	1	8047	8047		10.074	4.777	1	2577900	+		6550	15918	3631	3662	6388	6388					-0.006766084588548438
DQSVCVKLN	9	Unmodified	_DQSVCVKLN_					0	0	0			REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	REV__ENST00000532980.3_1_11:59055317-59056556:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	502.74871826171875	2	503.255317	1004.49608	0.36113	0.00018174	1.2038	0.00060579	1.5649	0.00078753	503.25602386114355	21.596	0.15908	21.615	21.535	21.694	0.018446					4	2	2	0	0	0	0.24195	1	7559	7559		13.906	3.0821	1	1980000	+		6551	14083	3632	3663	6389	6389					-0.005987801881815358
DQTILENKQQY	11	Unmodified	_DQTILENKQQY_					0	0	0		nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000487498.1_1_3:123649947-123650302:-|nuORF;nc|ENSG00000175455|Q49A88-4|CCDC14;ENST00000495381.5_1_3:123633936-123674711:-|nuORF;CCDC14|p.E558Vfs*7|1|0.04|ENSG00000175455|chr3:123931228-123931229|-/TTGAATAA|frameshift_variant;CCDC14|p.E558Rfs*13|1|0.03|ENSG00000175455|chr3:123931229-123931230|-/T|frameshift_variant;CCDC14|p.V615Afs*13|1|0.05|ENSG00000175455|chr3:123915674-123915675|-/TAATGAG|frameshift_variant	nc|ENSG00000175455|Q49A88-2|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	MSMS	HCT116MG_D190212_S1	1	690.343505859375	2	690.343706	1378.67286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.204	1	35.204	34.704	35.704	0								0	0	0	0.94385	1	13087	13087		9.544	1.3884	1				6552	5380	3633	3664	6390	6390					-0.0013307282420100819
DQTRHYDQDY	10	Unmodified	_DQTRHYDQDY_					0	0	0		SPEN|p.R161Q|1|0.67|ENSG00000065526|chr1:15876279-15876279|G/A|missense_variant	SPEN|p.R161Q|1|0.67|ENSG00000065526|chr1:15876279-15876279|G/A|missense_variant	SPEN|p.R161Q|1|0.67|ENSG00000065526|chr1:15876279-15876279|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	447.5216064453125	3	447.521579	1339.54291	0.21026	9.4095E-05	-0.17692	-7.9177E-05	0.033335	1.4918E-05	447.52140607512564	25.752	0.31275	25.624	25.494	25.807	-0.12795					14	5	4	0	0	0	0.68623	1	9223	9223		14.218	0	1	13662000			6553	18229	3634	3665	6391	6391					-0.11328249103348753
DQVESRLHEA	10	Unmodified	_DQVESRLHEA_					0	0	0			REV__AluSx1_dup107630|chr19:41713933-41714240:+|1.182438838059655|0.1247445926159485|3.24|476.0|5|2|sense	REV__AluSx1_dup107630|chr19:41713933-41714240:+|1.182438838059655|0.1247445926159485|3.24|476.0|5|2|sense	MSMS	HCT116MG_D190212_S4	4	592.2893676757812	2	592.288734	1182.56291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.073	1	18.886	18.386	19.386	-0.18674								0	0	0	0.92746	1	6445	6445		10.8	1.4164	1		+		6554	9929	3635	3666	6392	6392					-0.021064533726757873
DQVLVSPAV	9	Unmodified	_DQVLVSPAV_					0	0	0		ENST00000495328.5_2_9:124218117-124241469:-|nuORF;ENST00000481534.5_2_9:124214542-124241469:-|nuORF	ENST00000495328.5_2_9:124218117-124241469:-|nuORF	ENST00000495328.5_2_9:124218117-124241469:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	464.2609558105469	2	464.260925	926.507297	0.32075	0.00014891	-0.090689	-4.2104E-05	0.23006	0.00010681	464.2608090988033	33.27	0.46678	33.27	33.089	33.556	0					19	8	4	0	0	0	0.11731	1	12309	12309		54.774	2.5052	1	57374000			6555	8250	3636	3667	6393	6393					0.04110365177609765
DQVLVSPAV	9	Unmodified	_DQVLVSPAV_					0	0	0		ENST00000495328.5_2_9:124218117-124241469:-|nuORF;ENST00000481534.5_2_9:124214542-124241469:-|nuORF	ENST00000495328.5_2_9:124218117-124241469:-|nuORF	ENST00000495328.5_2_9:124218117-124241469:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	464.2613525390625	2	464.260925	926.507297	0.5257	0.00024406	-0.31074	-0.00014427	0.21496	9.9798E-05	464.26068786883604	33.544	0.36038	33.351	33.174	33.534	-0.19297					17	6	4	0	0	0	0.11731	1	12435	12435		54.774	2.5052	1	206140000			6556	8250	3636	3667	6394	6394					0.04110365177609765
DQVQIHTY	8	Unmodified	_DQVQIHTY_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	HCT116MG_D190212_S1	1	502.24615478515625	2	502.245806	1002.47706	0.35929	0.00018045	0.22756	0.00011429	0.58685	0.00029474	502.24583632801256	29.77	0.25963	29.77	29.633	29.893	0					9	4	3	0	0	0	0.14246	1	10894	10894		85.357	39.336	1	9210600			6557	2774	3637	3668	6395	6395					-0.02407993487577187
DQVQIHTY	8	Unmodified	_DQVQIHTY_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	HCT116MG_D190212_S2	2	502.2459716796875	2	502.245806	1002.47706	0.10648	5.3481E-05	0.22679	0.0001139	0.33327	0.00016739	502.2458371084497	30.08	0.36121	29.796	29.615	29.976	-0.28453					12	6	3	0	0	0	0.068362	1	11045	11045		103.75	46.277	1	49404000			6558	2774	3637	3668	6396	6396					-0.02407993487577187
DQVQIHTY	8	Unmodified	_DQVQIHTY_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;FKBP9|p.P380Lfs*6|1|0.38|ENSG00000122642|chr7:32996258-32996258|C/-|frameshift_variant;ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	HCT116MG_D190212_S3	3	502.24591064453125	2	502.245806	1002.47706	0.48077	0.00024146	-0.31951	-0.00016047	0.16126	8.099E-05	502.24563671237	30.17	0.26205	29.92	29.755	30.017	-0.24946					8	4	2	0	0	0	0.11121	1	10995	10995		92.491	40.223	1	12237000			6559	2774	3637	3668	6397	6397					-0.02407993487577187
DQVQKVDQY	9	Unmodified	_DQVQKVDQY_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MSMS	HCT116MG_D190212_S1	1	561.776123046875	2	561.774928	1121.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.284	1	32.284	31.784	32.784	0								0	0	0	0.59795	1	11908	11908		24.021	0	1				6560	4412	3638	3669	6398	6398					-0.020603566329327805
DQVRGMEGAPD	11	Unmodified	_DQVRGMEGAPD_					0	0	0			REV__ENSG00000122254|ENST00000261374|HS3ST2	REV__ENSG00000122254|ENST00000261374|HS3ST2	MSMS	HCT116MG_D190212_S3	3	392.2069396972656	3	392.176755	1173.50844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.304	1	22.305	21.805	22.805	0.00074577								0	0	0	0.94145	1	7818	7818		5.8681	0.46543	1		+		6561	11733	3639	3670	6399	6399					-0.07137788515774446
DQYHRWWFRKF	11	Unmodified	_DQYHRWWFRKF_					0	0	0			REV__ENST00000354179.8_2_5:176671236-176673694:+|nuORF	REV__ENST00000354179.8_2_5:176671236-176673694:+|nuORF	MSMS	HCT116MG_D190212_S1	1	556.9458618164062	3	556.944265	1667.81096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51	1	51	50.5	51.5	0								0	0	0	0.9619	1	19474	19474		0.094841	0.011491	1		+		6562	15026	3640	3671	6400	6400					0.003771400055484264
DQYRSCDNVSA	11	Unmodified	_DQYRSCDNVSA_					0	0	0		nc|ENSG00000079841|Q86UR5-12|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1	nc|ENSG00000079841|Q86UR5-12|RIMS1	nc|ENSG00000079841|Q86UR5-12|RIMS1	MULTI-MSMS	HCT116MG_D190212_S2	2	629.26171875	2	629.261859	1256.50916	0.67668	0.00042581	-1.3454	-0.00084661	-0.66873	-0.00042081	629.2606983457101	36.373	0.51785	36.245	35.916	36.434	-0.12799					20	9	3	0	0	0	0.6977	1	13607	13607		22.658	8.752	1	50197000			6563	9383	3641	3672	6401	6401					-0.10882993866721336
DQYRSCDNVSA	11	Unmodified	_DQYRSCDNVSA_					0	0	0		nc|ENSG00000079841|Q86UR5-12|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1	nc|ENSG00000079841|Q86UR5-12|RIMS1	nc|ENSG00000079841|Q86UR5-12|RIMS1	MULTI-MSMS	HCT116MG_D190212_S4	4	629.2622680664062	2	629.261859	1256.50916	0.42739	0.00026894	-1.4265	-0.00089763	-0.99908	-0.00062868	629.2610436005152	36.659	0.46447	36.274	35.971	36.435	-0.38486					12	8	2	0	0	0	0.72004	1	13403	13403		14.405	0.49933	1	5784300			6564	9383	3641	3672	6402	6402					-0.10882993866721336
DRALGPEY	8	Unmodified	_DRALGPEY_					0	0	0		DMRTB1|p.P297Rfs*13|3|0.27|ENSG00000143006|chr1:53464771-53464771|C/-|frameshift_variant;ENSG00000143006|ENST00000371445|DMRTB1	DMRTB1|p.P297Rfs*13|3|0.27|ENSG00000143006|chr1:53464771-53464771|C/-|frameshift_variant	DMRTB1|p.P297Rfs*13|3|0.27|ENSG00000143006|chr1:53464771-53464771|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	460.72711181640625	2	460.727249	919.439946	0.19285	8.8851E-05	0.21183	9.7594E-05	0.40468	0.00018645	460.7272611076882	24.732	0.31288	24.352	24.135	24.448	-0.38003					8	5	2	0	0	0	0.31873	1	8891	8891		57.471	11.45	1	13927000			6565	692	3642	3673	6403	6403					-0.02299665033342535
DRDVQLRVLGG	11	Unmodified	_DRDVQLRVLGG_					0	0	0		ENST00000335574.9_2_20:30154038-30157019:+|nuORF	ENST00000335574.9_2_20:30154038-30157019:+|nuORF	ENST00000335574.9_2_20:30154038-30157019:+|nuORF	MSMS	HCT116MG_D190212_S2	2	614.344482421875	2	614.343843	1226.67313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.885	1	56.706	56.206	57.206	-0.17904								0	0	0	0.93456	1	21955	21955		14.405	1.5328	1				6566	7188	3643	3674	6404	6404					0.06886391686316529
DRELMRFSDH	10	Unmodified	_DRELMRFSDH_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MSMS	HCT116MG_D190212_S3	3	653.3026123046875	2	653.303861	1304.59317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.538	1	30.288	29.788	30.788	-0.24946								0	0	0	0.92917	1	11124	11124		9.3831	0.63772	1				6567	4005	3644	3675	6405	6405					-0.04694417979180798
DRERRSKY	8	Unmodified	_DRERRSKY_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	555.2933959960938	2	555.294153	1108.57375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.348	1	11.066	10.566	11.566	-0.28186								0	0	0	0.8837	1	3651	3651		2.5775	0	1				6568	6046	3645	3676	6406	6406					0.02380993792235131
DRFRRGKRR	9	Unmodified	_DRFRRGKRR_					0	0	0			REV__ENST00000282388.3_2_2:43451217-43451442:-|nuORF	REV__ENST00000282388.3_2_2:43451217-43451442:-|nuORF	MSMS	HCT116MG_D190212_S2	2	416.2491760253906	3	416.249911	1245.7279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.901	1	37.808	37.308	38.308	-0.09301								0	0	0	0.76799	1	14222	14222		7.9454	1.3219	1		+		6569	14723	3646	3677	6407	6407					0.11486868068254807
DRFRSWHRLME	11	Unmodified	_DRFRSWHRLME_					0	0	0		ENST00000527436.5_1_6:28195836-28195965:+|nuORF	ENST00000527436.5_1_6:28195836-28195965:+|nuORF	ENST00000527436.5_1_6:28195836-28195965:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	766.8820190429688	2	766.880601	1531.74665	0.89012	0.00068261	1.0328	0.00079206	1.923	0.0014747	767.382665757856	21.566	0.36324	21.348	21.166	21.529	-0.21832					11	6	2	0	0	0	0.73981	1	7466	7466		7.1017	1.3699	1	4403700			6570	8596	3647	3678	6408	6408					0.0020461685714963096
DRGETGPAGPA	11	Unmodified	_DRGETGPAGPA_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	514.2434692382812	2	514.243795	1026.47304	0.20916	0.00010756	-0.15641	-8.0434E-05	0.052751	2.7127E-05	514.243694068239	19.388	0.5199	19.018	18.732	19.252	-0.3695					22	9	3	0	0	0	0.038258	1	6694	6694		121.5	62.135	1	25249000			6571	513	3648	3679	6409	6409					-0.03914082981282263
DRGETGPAGPA	11	Unmodified	_DRGETGPAGPA_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	514.2438354492188	2	514.243795	1026.47304	0.18282	9.4012E-05	0.024741	1.2723E-05	0.20756	0.00010674	514.2437894134048	18.952	1.0931	19.021	18.302	19.395	0.069159					44	20	3	0	0	0	0.038258	4	6484	6247;6248;6484;6538		121.5	65.326	1	34871000			6572	513	3648	3679	6410;6411;6412;6413	6412					-0.03914082981282263
DRGETGPAGPA	11	Unmodified	_DRGETGPAGPA_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	514.2439575195312	2	514.243795	1026.47304	0.19432	9.9928E-05	0.031799	1.6353E-05	0.22612	0.00011628	514.2437469680448	19.134	0.72786	18.947	18.557	19.285	-0.18674					31	13	3	0	0	0	0.053212	2	6491	6491;6524		97.741	53.883	1	25468000			6573	513	3648	3679	6414;6415	6414					-0.03914082981282263
DRGGLQGPTP	10	Unmodified	_DRGGLQGPTP_					0	0	0		ENST00000521478.1_1_7:27187126-27190080:-|nuORF	ENST00000521478.1_1_7:27187126-27190080:-|nuORF	ENST00000521478.1_1_7:27187126-27190080:-|nuORF	MSMS	HCT116MG_D190212_S3	3	499.25909423828125	2	499.256705	996.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.812	1	31.541	31.041	32.041	-0.27028								0	0	0	0.86501	1	11636	11636		20.415	4.5674	1				6574	8558	3649	3680	6416	6416					0.0004681126099512767
DRGRMWHYWLI	11	Unmodified	_DRGRMWHYWLI_					0	0	0			REV__ENST00000464699.5_1_2:27666013-27666819:+|nuORF	REV__ENST00000464699.5_1_2:27666013-27666819:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	766.8822631835938	2	766.882613	1531.75067	0.49348	0.00037844	-0.68593	-0.00052603	-0.19244	-0.00014758	766.8819782421326	21.278	0.26389	21.297	21.219	21.483	0.018446					7	4	2	0	0	0	0.73696	1	7437	7437		8.1555	3.6267	1	3885700	+		6575	15810	3650	3681	6417	6417					0.006067063508680803
DRHLSSHFNL	10	Unmodified	_DRHLSSHFNL_					0	0	0		ENSG00000162949|ENST00000295055|CAPN13	ENSG00000162949|ENST00000295055|CAPN13	ENSG00000162949|ENST00000295055|CAPN13	MULTI-SECPEP	HCT116MG_D190212_S1	1	409.2446594238281	3	409.207266	1224.59997	0.081934	3.3528E-05	-0.26613	-0.0001089	-0.1842	-7.5375E-05	409.2074360589976	20.905	0.26089	20.905	20.696	20.956	0					6	4	2	0	0	0	0.30986	1	7282	7282		5.7834	1.0675	1	1373100			6576	4569	3651	3682	6418	6418					-0.0033473703629169904
DRIDEPDGLGP	11	Unmodified	_DRIDEPDGLGP_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	HCT116MG_D190212_S4	4	592.2835693359375	2	592.283117	1182.55168	0.76158	0.00045107	0.19922	0.00011799	0.9608	0.00056907	592.2829438693431	30.206	0.57176	29.849	29.389	29.961	-0.3571					14	10	3	0	0	0	0.71776	1	10951	10951		15.248	0.8431	1	4676200			6577	1236	3652	3683	6419	6419					-0.03229275466856052
DRIGLADY	8	Unmodified	_DRIGLADY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.A550T|1|0.22|ENSG00000100242|chr22:38739357-38739357|C/T|missense_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S2	2	461.7353210449219	2	461.735074	921.455596	0.40527	0.00018713	-0.12287	-5.6734E-05	0.2824	0.00013039	461.734960404011	39.277	0.20699	39.2	39.07	39.277	-0.077835					6	3	2	0	0	0	0.49192	1	14806	14806		41.84	16.44	1	25757000			6578	1680	3653	3684	6420	6420					-0.00827378516294175
DRLMYEQYRM	10	Unmodified	_DRLMYEQYRM_					0	0	0		EXOC3|p.G154R|1|0.41|ENSG00000180104|chr5:453465-453465|G/A|missense_variant	EXOC3|p.G154R|1|0.41|ENSG00000180104|chr5:453465-453465|G/A|missense_variant	EXOC3|p.G154R|1|0.41|ENSG00000180104|chr5:453465-453465|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	468.8865051269531	3	468.884807	1403.63259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.773	1	11.828	11.328	12.328	0.055045								0	0	0	0.96836	1	3628	3628		0.62683	0.35781	1				6579	9145	3654	3685	6421	6421					-0.05308034019981278
DRLYLFRWLLP	11	Unmodified	_DRLYLFRWLLP_					0	0	0			REV__ENST00000492535.1_1_22:32889009-32894514:+|nuORF	REV__ENST00000492535.1_1_22:32889009-32894514:+|nuORF	MSMS	HCT116MG_D190212_S3	3	497.73858642578125	3	497.953878	1490.8398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.609	1	50.296	49.796	50.796	-0.31381								0	0	0	0.96111	1	19089	19089		0.50596	0	1		+		6580	11071	3655	3686	6422	6422					0.1140186458203516
DRRRRYNSQFN	11	Unmodified	_DRRRRYNSQFN_					0	0	0		ENSG00000105617|ENST00000222224|LENG1	ENSG00000105617|ENST00000222224|LENG1	ENSG00000105617|ENST00000222224|LENG1	MSMS	HCT116MG_D190212_S1	1	756.3818969726562	2	756.382354	1510.75016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.056	1	33.056	32.556	33.556	0								0	0	0	0.94145	1	12220	12220		10.8	5.0677	1				6581	2016	3656	3687	6423	6423					0.015210029553827553
DRRRWRHTDTI	11	Unmodified	_DRRRWRHTDTI_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MSMS	HCT116MG_D190212_S1	1	756.4013061523438	2	756.400547	1510.78654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.745	1	39.745	39.245	40.245	0								0	0	0	0.95636	1	14918	14918		2.9952	0	1				6582	5316	3657	3688	6424	6424					0.05157879852072256
DRRTTRRKYWK	11	Unmodified	_DRRTTRRKYWK_					0	0	0		nc|ENSG00000166402|P50607-2|TUB	nc|ENSG00000166402|P50607-2|TUB	nc|ENSG00000166402|P50607-2|TUB	MULTI-MSMS	HCT116MG_D190212_S1	1	522.630615234375	3	522.630569	1564.86988	0.47335	0.00024739	-0.87054	-0.00045497	-0.39719	-0.00020758	522.6300244908002	52.82	0.41164	52.82	52.69	53.102	0					10	7	2	0	0	0	0.74191	1	20292	20292		1.3296	0.87513	1	13482000			6583	9534	3658	3689	6425	6425					0.11003616299922214
DRSRRVEGKP	10	Unmodified	_DRSRRVEGKP_					0	0	0		ENST00000583444.1_1_17:80187265-80187778:+|nuORF	ENST00000583444.1_1_17:80187265-80187778:+|nuORF	ENST00000583444.1_1_17:80187265-80187778:+|nuORF	MSMS	HCT116MG_D190212_S4	4	600.3352661132812	2	600.33381	1198.65307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.273	1	36.889	36.389	37.389	-0.3839								0	0	0	0.92607	1	13672	13672		10.074	0.6908	1				6584	8970	3659	3690	6426	6426					0.061686407463867
DRTGKQGP	8	Unmodified	_DRTGKQGP_					0	0	0		ENST00000301732.9_1_16:2326578-2326671:-|nuORF	ENST00000301732.9_1_16:2326578-2326671:-|nuORF	ENST00000301732.9_1_16:2326578-2326671:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	429.7249450683594	2	429.725041	857.435529	0.0841	3.614E-05	2.0032	0.00086082	2.0873	0.00089696	429.7249979185709	19.963	0.31262	20.011	19.843	20.155	0.048107					8	5	2	0	0	0	0.31097	1	6898	6898		11.64	0	1	1698400			6585	7004	3660	3691	6427	6427					0.001108705437673052
DRVPWSPVR	9	Unmodified	_DRVPWSPVR_					0	0	0		ENST00000325167.9_1_17:78972954-78973176:+|nuORF	ENST00000325167.9_1_17:78972954-78973176:+|nuORF	ENST00000325167.9_1_17:78972954-78973176:+|nuORF	MSMS	HCT116MG_D190212_S4	4	371.2041015625	3	371.205085	1110.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.98	1	59.709	59.209	60.209	-0.27156								0	0	0	0.77001	1	22586	22586		0.86438	0.16671	1				6586	7132	3661	3692	6428	6428					0.04255369802990572
DRVSRTVSL	9	Unmodified	_DRVSRTVSL_					0	0	0		KIF21B|p.R1189W|2|0.35|ENSG00000116852|chr1:200987045-200987045|G/A|missense_variant;nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	KIF21B|p.R1189W|2|0.35|ENSG00000116852|chr1:200987045-200987045|G/A|missense_variant	KIF21B|p.R1189W|2|0.35|ENSG00000116852|chr1:200987045-200987045|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	516.7942504882812	2	516.793455	1031.57236	0.39449	0.00020387	0.45617	0.00023575	0.85067	0.00043962	516.7936373375201	47.394	1.4527	47.394	46.492	47.944	0					43	28	2	0	0	0	0.37539	1	18151	18151		24.021	24.021	1	16441000			6587	2544	3662	3693	6429	6429					0.057833597034687045
DRYEVIARP	9	Unmodified	_DRYEVIARP_					0	0	0			REV__ENST00000477529.1_1_7:100485861-100486167:+|nuORF	REV__ENST00000477529.1_1_7:100485861-100486167:+|nuORF	MSMS	HCT116MG_D190212_S3	3	373.536376953125	3	373.536612	1117.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.691	1	16.775	16.275	17.275	0.084593								0	0	0	0.7663	1	5557	5557		9.544	1.6979	1		+		6588	10943	3663	3694	6430	6430					0.033916462205070275
DRYSLHDSDEY	11	Unmodified	_DRYSLHDSDEY_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	MULTI-MSMS	HCT116MG_D190212_S2	2	700.2922973632812	2	700.29167	1398.56879	0.90938	0.00063683	0.14973	0.00010485	1.0591	0.00074168	700.2917280526055	46.465	0.36031	46.354	46.214	46.574	-0.11121					17	6	4	0	0	0	0.63759	1	17704	17704		31.268	3.6395	1	80888000	+		6589	13540	3664	3695	6431	6431					-0.11455399651708831
DRYSLHDSDEY	11	Unmodified	_DRYSLHDSDEY_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	MULTI-MSMS	HCT116MG_D190212_S3	3	700.2924194335938	2	700.29167	1398.56879	0.92604	0.0006485	-0.21923	-0.00015352	0.70681	0.00049497	700.7933465631427	46.725	0.31273	46.411	46.229	46.542	-0.31405					13	5	3	0	0	0	0.69138	1	17536	17536		24.991	2.2547	1	15702000	+		6590	13540	3664	3695	6432	6432					-0.11455399651708831
DRYSLHDSDEY	11	Unmodified	_DRYSLHDSDEY_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	MULTI-MSMS	HCT116MG_D190212_S3	3	467.1968688964844	3	467.196872	1398.56879	0.42158	0.00019696	-0.22307	-0.00010422	0.19851	9.2742E-05	467.1966862525335	46.725	0.26056	46.411	46.229	46.49	-0.31405					7	4	2	0	0	0	0.74191	1	17555	17555		2.2527	0	1	4926800	+		6591	13540	3664	3695	6433	6433					-0.11455399651708831
DRYSLHDSDEY	11	Unmodified	_DRYSLHDSDEY_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	700.29167	1398.56879	0.86608	0.00060651	-0.65034	-0.00045542	0.21574	0.00015108	700.7931209224425	46.415	0.20652	46.415	46.285	46.492	0	0.005418	-0.00094598	NaN	31.268	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21083000	+		6592	13540	3664	3695							-0.11455399651708831
DRYSLHDSDEY	11	Unmodified	_DRYSLHDSDEY_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	700.29167	1398.56879	0.90938	0.00063683	0.14973	0.00010485	1.0591	0.00074168	700.2917280526055	46.465	0.36031	46.354	46.214	46.574	-0.11121	-0.055801	0.00017457	NaN	31.268	17	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80888000	+		6593	13540	3664	3695							-0.11455399651708831
DRYSLHDSDEY	11	Unmodified	_DRYSLHDSDEY_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	700.29167	1398.56879	0.92604	0.0006485	-0.21923	-0.00015352	0.70681	0.00049497	700.7933465631427	46.725	0.31273	46.411	46.229	46.542	-0.31405	0.0019462	-0.00034218	NaN	31.268	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15702000	+		6594	13540	3664	3695							-0.11455399651708831
DSAAGPTH	8	Unmodified	_DSAAGPTH_					0	0	0			REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF	REV__ENST00000532145.1_1_15:101605000-101609050:+|nuORF	MSMS	HCT116MG_D190212_S2	2	378.169189453125	2	378.169567	754.324582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.814	1	30.547	30.047	31.047	-0.26704								0	0	0	0.8837	1	11343	11343		14.582	4.3983	1		+		6595	12672	3665	3696	6434	6434					-0.062407691643443286
DSACHWGEY	9	Unmodified	_DSACHWGEY_					0	0	0			REV__MARS2|p.Y169H|1|0.12|ENSG00000247626|chr2:197705910-197705910|T/C|missense_variant	REV__MARS2|p.Y169H|1|0.12|ENSG00000247626|chr2:197705910-197705910|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	534.1987915039062	2	534.197999	1066.38144	0.46874	0.0002504	0.97931	0.00052315	1.4481	0.00077355	534.1984312762017	40.77	0.28765	40.392	40.286	40.573	-0.37828					7	5	2	0	0	0	0.59184	1	14979	14979		11.64	2.2929	1	5617700	+		6596	17007	3666	3697	6435	6435					-0.14909089670095454
DSACHWGEY	9	Unmodified	_DSACHWGEY_					0	0	0			REV__MARS2|p.Y169H|1|0.12|ENSG00000247626|chr2:197705910-197705910|T/C|missense_variant	REV__MARS2|p.Y169H|1|0.12|ENSG00000247626|chr2:197705910-197705910|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	534.197999	1066.38144	0.62546	0.00033412	0.79586	0.00042515	1.4213	0.00075926	534.1981835042732	40.511	0.30989	40.442	40.261	40.571	-0.069626	0.047152	0.00011251	NaN	11.64	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12637000	+		6597	17007	3666	3697							-0.14909089670095454
DSACHWGEY	9	Unmodified	_DSACHWGEY_					0	0	0			REV__MARS2|p.Y169H|1|0.12|ENSG00000247626|chr2:197705910-197705910|T/C|missense_variant	REV__MARS2|p.Y169H|1|0.12|ENSG00000247626|chr2:197705910-197705910|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	534.197999	1066.38144	0.46874	0.0002504	0.97931	0.00052315	1.4481	0.00077355	534.1984312762017	40.77	0.28765	40.392	40.286	40.573	-0.37828	-0.0026446	0.00030852	NaN	11.64	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5617700	+		6598	17007	3666	3697							-0.14909089670095454
DSAKAFAK	8	Unmodified	_DSAKAFAK_					0	0	0			REV__ENSG00000198081|ENST00000651870|ZBTB14	REV__ENSG00000198081|ENST00000651870|ZBTB14	MSMS	HCT116MG_D190212_S1	1	419.2266845703125	2	419.226885	836.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.976	1	44.976	44.476	45.476	0								0	0	0	0.8837	1	17029	17029		5.2307	2.6532	1		+		6599	14107	3667	3698	6436	6436					0.014455403176043546
DSALAKKRQR	10	Unmodified	_DSALAKKRQR_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MSMS	HCT116MG_D190212_S1	1	586.7384643554688	2	586.846553	1171.67855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.663	1	31.663	31.163	32.163	0								0	0	0	0.92917	1	11658	11658		9.3831	0.63772	1				6600	6285	3668	3699	6437	6437					0.09958115268796064
DSDDDDDEDYD	11	Unmodified	_DSDDDDDEDYD_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S1	1	659.6889038085938	2	659.689306	1317.36406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.286	1	45.286	44.786	45.786	0								0	0	0	0.9598	1	17154	17154		1.1933	0.84271	1		+		6601	13963	3669	3700	6438	6438					-0.2819284804338622
DSDDHQVMY	9	Unmodified	_DSDDHQVMY_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant;ENST00000509802.1_1_4:79369241-79371543:+|nuORF;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	HCT116MG_D190212_S1	1	555.2149047851562	2	555.213846	1108.41314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.423	1	29.423	28.923	29.923	0								0	0	0	0.35515	1	10753	10753		36.127	25.303	1				6602	3585;9166	3670	3701	6439	6439					-0.1367314170681766
DSDDHQVMY	9	Unmodified	_DSDDHQVMY_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant;ENST00000509802.1_1_4:79369241-79371543:+|nuORF;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	HCT116MG_D190212_S2	2	555.2147216796875	2	555.213846	1108.41314	0.42921	0.0002383	0.662	0.00036755	1.0912	0.00060585	555.2138462192331	29.776	0.25847	29.475	29.34	29.599	-0.30095					10	4	3	0	0	0	0.035349	1	10937	10937		81.89	49.585	1	22941000			6603	3585;9166	3670	3701	6440	6440					-0.1367314170681766
DSDDHQVMY	9	Unmodified	_DSDDHQVMY_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant;ENST00000509802.1_1_4:79369241-79371543:+|nuORF;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	HCT116MG_D190212_S3	3	555.214111328125	2	555.213846	1108.41314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.892	1	29.656	29.156	30.156	-0.23655								0	0	0	0.038113	1	10875	10875		74.929	46.442	1				6604	3585;9166	3670	3701	6441	6441					-0.1367314170681766
DSDDSDLEDV	10	Unmodified	_DSDDSDLEDV_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53116914-53117118:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MSMS	HCT116MG_D190212_S3	3	555.2101440429688	2	555.20948	1108.40441	0.50585	0.00028085	1.5811	0.00087786	2.087	0.0011587	555.2100709503695	45.642	0.31198	45.331	45.2	45.512	-0.31094					8	5	2	0	0	0	0.77749	1	17135	17135		13.906	0.86358	1	2935700			6605	5761	3671	3702	6442	6442					-0.14545836862293982
DSDFEYSTQSY	11	Unmodified	_DSDFEYSTQSY_					0	0	0		ENST00000522063.1_1_8:27957393-27970048:+|nuORF;ENST00000521938.5_1_8:27950677-27967964:+|nuORF;ELP3|p.T241Qfs*24|1|0.05|ENSG00000134014|chr8:28129605-28129605|A/-|frameshift_variant;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3	ENST00000522063.1_1_8:27957393-27970048:+|nuORF	ENST00000522063.1_1_8:27957393-27970048:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	671.2599487304688	2	671.259504	1340.50446	0.57629	0.00038684	0.08793	5.9024E-05	0.66422	0.00044587	671.2592983665846	38.829	0.35863	38.448	38.232	38.591	-0.38163					14	6	3	0	0	0	3.8637E-05	1	14237	14237		160.69	125.76	1	4545900			6606	772	3672	3703	6443	6443					-0.15217599528500614
DSDFRKDDFY	10	Unmodified	_DSDFRKDDFY_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	654.28076171875	2	654.280574	1306.5466	0.28933	0.00018931	0.36071	0.00023601	0.65005	0.00042531	654.28065105607	36.142	0.31213	35.842	35.678	35.99	-0.30042					11	5	3	0	0	0	0.011036	1	13356	13356		143.21	116.95	1	12373000			6607	961	3673	3704	6444	6444					-0.09441579329472916
DSDFRKDDFY	10	Unmodified	_DSDFRKDDFY_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	654.2800903320312	2	654.280574	1306.5466	0.74803	0.00048942	-0.21875	-0.00014313	0.52927	0.00034629	654.2803145003245	36.226	0.24511	35.84	35.725	35.97	-0.38558					7	4	2	0	0	0	0.49415	1	13279	13279		35.612	24.813	1	3193900			6608	961	3673	3704	6445	6445					-0.09441579329472916
DSDLKRAPNK	10	Unmodified	_DSDLKRAPNK_					0	0	0			REV__ENSG00000163982|ENST00000296358|OTOP1	REV__ENSG00000163982|ENST00000296358|OTOP1	MSMS	HCT116MG_D190212_S4	4	381.8746032714844	3	381.875405	1142.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.32673	1	0.062164	-0.43784	0.56216	-0.26456								0	0	0	0.96804	1	114	114		0.69767	0.29695	1		+		6609	12967	3674	3705	6446	6446					0.03878727386609171
DSDLLDSQV	9	Unmodified	_DSDLLDSQV_					0	0	0		nc|ENSG00000156735|O95429-2|BAG4;ENSG00000156735|ENST00000287322|BAG4	nc|ENSG00000156735|O95429-2|BAG4	nc|ENSG00000156735|O95429-2|BAG4	MULTI-MSMS	HCT116MG_D190212_S3	3	991.4588623046875	1	991.457846	990.45057	0.67928	0.00067348	-0.070588	-6.9985E-05	0.60869	0.00060349	991.45772763727	33.983	0.2604	33.689	33.507	33.767	-0.29419					6	4	2	0	0	0	0.031005	1	12509	12509		85.357	0	1	3450900			6610	4297	3675	3706	6447	6447					-0.04503727169560534
DSDLRNDSY	9	Unmodified	_DSDLRNDSY_					0	0	0		MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	542.4684448242188	2	542.730717	1083.44688	0.61261	0.00033248	-0.71116	-0.00038597	-0.098551	-5.3487E-05	542.7301559345751	24.229	0.15735	24.229	24.15	24.307	0					4	2	2	0	0	0	0.061424	1	8680	8680		74.2	58.051	1	4693400			6611	1366	3676	3707	6448	6448					-0.09150396943414307
DSDLRNDSY	9	Unmodified	_DSDLRNDSY_					0	0	0		MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7308349609375	2	542.730717	1083.44688	0.54379	0.00029513	-0.34098	-0.00018506	0.20281	0.00011007	542.7306626744929	24.642	0.26094	24.262	24.135	24.396	-0.38003					9	4	3	0	0	0	0.0038512	1	8846	8846		152.89	99.053	1	24492000			6612	1366	3676	3707	6449	6449					-0.09150396943414307
DSDLRNDSY	9	Unmodified	_DSDLRNDSY_					0	0	0		MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	542.7307739257812	2	542.730717	1083.44688	0.38511	0.00020901	0.39705	0.00021549	0.78216	0.0004245	542.7307970871396	24.399	0.25989	24.315	24.185	24.445	-0.083694					10	4	3	0	0	0	0.0046822	1	8667	8667		140.63	94.934	1	7301300			6613	1366	3676	3707	6450	6450					-0.09150396943414307
DSDLRNDSY	9	Unmodified	_DSDLRNDSY_					0	0	0		MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	542.7310180664062	2	542.730717	1083.44688	0.64944	0.00035247	0.24206	0.00013137	0.8915	0.00048384	542.7310422430304	24.623	0.25912	24.354	24.238	24.497	-0.26881					8	4	3	0	0	0	0.17423	1	8704	8704		43.982	18.583	1	1626000			6614	1366	3676	3707	6451	6451					-0.09150396943414307
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S2	2	1071.4661865234375	1	1071.4663	1070.45903	0.45634	0.00048895	0.16159	0.00017314	0.61793	0.00066209	1071.4666372371516	45.464	0.41169	45.371	45.153	45.565	-0.092472					16	7	3	0	0	0	0.0090481	1	17278	17278		115.69	60.918	1	53458000			6615	4074	3677	3708	6452	6452					-0.07338496524585025
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S2	2	536.2373046875	2	536.23679	1070.45903	0.42556	0.0002282	0.26078	0.00013984	0.68633	0.00036804	536.2367541518025	45.426	0.25767	45.334	45.205	45.462	-0.092472					7	4	2	0	0	0	0.12205	1	17308	17308		53.833	17.789	1	13883000			6616	4074	3677	3708	6453	6453					-0.07338496524585025
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S3	3	1071.468017578125	1	1071.4663	1070.45903	0.60435	0.00064755	-0.15655	-0.00016774	0.4478	0.00047981	1071.4661919679284	45.656	0.46802	45.345	45.148	45.616	-0.31094					24	8	4	0	0	0	0.0090481	1	17084	17084		115.69	60.918	1	41889000			6617	4074	3677	3708	6454	6454					-0.07338496524585025
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2371215820312	2	536.23679	1070.45903	0.56977	0.00030553	-0.34421	-0.00018458	0.22556	0.00012095	536.2366579658168	45.642	0.46802	45.331	45.148	45.616	-0.31094					21	8	3	0	0	0	0.023938	1	17105	17105		92.491	33.813	1	25360000			6618	4074	3677	3708	6455	6455					-0.07338496524585025
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S4	4	1071.4677734375	1	1071.4663	1070.45903	0.62994	0.00067496	-0.15284	-0.00016376	0.4771	0.00051119	1071.4663800984872	45.749	0.35765	45.377	45.144	45.501	-0.37206					15	6	3	0	0	0	0.0090481	1	16872	16872		115.69	60.918	1	10769000			6619	4074	3677	3708	6456	6456					-0.07338496524585025
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MSMS	HCT116MG_D190212_S4	4	536.2371215820312	2	536.23679	1070.45903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.724	1	45.351	44.851	45.851	-0.3723								0	0	0	0.034673	1	16877	16877		78.149	44.047	1				6620	4074	3677	3708	6457	6457					-0.07338496524585025
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1071.4663	1070.45903	0.71107	0.00076189	-0.87541	-0.00093797	-0.16434	-0.00017608	1071.4652914249396	45.321	0.15485	45.321	45.244	45.399	0	-0.032471	-0.00076276	NaN	115.69	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7056500			6621	4074	3677	3708							-0.07338496524585025
DSDMQTLVY	9	Oxidation (M)	_DSDM(Oxidation (M))QTLVY_		DSDM(1)QTLVY		DSDM(46)QTLVY	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S3	3	544.2342529296875	2	544.234247	1086.45394	0.32965	0.0001794	0.30044	0.00016351	0.63008	0.00034291	544.2343232611404	38.602	0.52023	38.301	38.04	38.561	-0.30137					17	9	3	0	0	0	0.16306	1	14298	14298		45.7	18.816	1	11592000			6622	4074	3677	3709	6458	6458		94			-0.08582800387216594
DSDMQTLVY	9	Oxidation (M)	_DSDM(Oxidation (M))QTLVY_		DSDM(1)QTLVY		DSDM(100)QTLVY	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S3	3	1087.4615478515625	1	1087.46122	1086.45394	0.27302	0.0002969	-0.16033	-0.00017435	0.11269	0.00012255	1087.4610822340205	38.575	0.36415	38.274	38.144	38.508	-0.30137					11	6	2	0	0	0	0.01389	1	14307	14307		103.75	57.727	1	6923400			6623	4074	3677	3709	6459	6459		94			-0.08582800387216594
DSDMQTLVY	9	Oxidation (M)	_DSDM(Oxidation (M))QTLVY_		DSDM(1)QTLVY		DSDM(54)QTLVY	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S4	4	544.2340087890625	2	544.234247	1086.45394	0.37241	0.00020268	0.054468	2.9643E-05	0.42688	0.00023232	544.2340883283874	38.683	0.34325	38.301	38.096	38.44	-0.38163					16	6	3	0	0	0	0.12205	1	14176	14176		53.833	26.949	1	6265800			6624	4074	3677	3709	6460	6460		94			-0.08582800387216594
DSDMQTLVY	9	Oxidation (M)	_DSDM(Oxidation (M))QTLVY_		DSDM(1)QTLVY		DSDM(92)QTLVY	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S4	4	1087.460693359375	1	1087.46122	1086.45394	0.42906	0.00046658	-0.048103	-5.231E-05	0.38095	0.00041427	1087.4614115821394	38.639	0.34325	38.258	38.096	38.44	-0.38163					9	6	2	0	0	0	0.023938	1	14186	14186		92.491	46.47	1	3421000			6625	4074	3677	3709	6461	6461		94			-0.08582800387216594
DSDRGLQEGY	10	Unmodified	_DSDRGLQEGY_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	HCT116MG_D190212_S3	3	570.2520751953125	2	570.251817	1138.48908	0.47563	0.00027123	-0.11438	-6.5224E-05	0.36125	0.000206	570.2517236882735	27.107	0.3125	26.938	26.807	27.12	-0.16933					12	5	3	0	0	0	0.016452	1	9758	9758		128.57	82.873	1	12104000			6626	5399	3678	3710	6462	6462					-0.07462421535024077
DSDRGLQEGY	10	Unmodified	_DSDRGLQEGY_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	HCT116MG_D190212_S4	4	570.7533569335938	2	570.251817	1138.48908	0.66	0.00037636	-0.16366	-9.3329E-05	0.49633	0.00028303	570.2516796225406	27.236	0.20783	26.925	26.794	27.002	-0.3114					8	3	3	0	0	0	0.39839	2	9755	9755;9769		42.312	12.876	1	2698200			6627	5399	3678	3710	6463;6464	6463					-0.07462421535024077
DSDRGLQEGY	10	Unmodified	_DSDRGLQEGY_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MATCH	HCT116MG_D190212_S1	1		2	570.251817	1138.48908	0.30397	0.00017334	-0.13654	-7.786E-05	0.16743	9.548E-05	570.2513370481979	26.829	0.26074	26.829	26.709	26.97	0	-0.068241	-2.0595E-05	NaN	128.57	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2097800			6628	5399	3678	3710							-0.07462421535024077
DSDRPGPQA	9	Unmodified	_DSDRPGPQA_					0	0	0			REV__ENST00000397086.6_2_16:2314685-2317848:-|nuORF	REV__ENST00000397086.6_2_16:2314685-2317848:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	471.7172546386719	2	471.717413	941.420273	0.25704	0.00012125	-0.17786	-8.39E-05	0.079184	3.7352E-05	471.71727458659797	17.093	0.78109	16.743	16.196	16.978	-0.34933					21	14	2	0	0	0	0.20983	1	5809	5809		40.239	2.0636	1	6922500	+		6629	15366	3679	3711	6465	6465					-0.05278041044095971
DSDRPGPQA	9	Unmodified	_DSDRPGPQA_					0	0	0			REV__ENST00000397086.6_2_16:2314685-2317848:-|nuORF	REV__ENST00000397086.6_2_16:2314685-2317848:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	471.717413	941.420273	0.25704	0.00012125	-0.17786	-8.39E-05	0.079184	3.7352E-05	471.71727458659797	17.093	0.78109	16.743	16.196	16.978	-0.34933	0.032094	-0.00018339	NaN	40.239	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6922500	+		6630	15366	3679	3711							-0.05278041044095971
DSDRYRDGY	9	Unmodified	_DSDRYRDGY_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;EIF4B|p.R227C|1|0.16|ENSG00000063046|chr12:53027793-53027793|C/T|missense_variant	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	HCT116MG_D190212_S2	2	573.7443237304688	2	573.744159	1145.47377	0.34722	0.00019922	-0.13298	-7.6295E-05	0.21425	0.00012292	573.7441313992553	21.007	0.26026	20.624	20.494	20.755	-0.38288					6	4	2	0	0	0	0.12421	1	7396	7396		53.404	15.228	1	16240000			6631	1126	3680	3712	6466	6466					-0.0931528833223183
DSDSSLNQSY	10	Unmodified	_DSDSSLNQSY_					0	0	0		TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant;TBC1D32|p.F1022Sfs*5|1|0.3|ENSG00000146350|chr6:121113166-121113166|A/-|frameshift_variant;ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;TBC1D32|p.K717Nfs*29|1|0.1|ENSG00000146350|chr6:121242207-121242207|T/-|frameshift_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	558.72998046875	2	558.228007	1114.44146	0.42965	0.00023984	0.15896	8.8737E-05	0.58861	0.00032858	558.2279700224977	27.922	0.25989	27.733	27.569	27.829	-0.18847					8	4	2	0	0	0	0.24395	1	10107	10107		55.503	36.246	1	4534500			6632	3944	3681	3713	6467	6467					-0.11118120525907216
DSDSSLNQSY	10	Unmodified	_DSDSSLNQSY_					0	0	0		TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant;TBC1D32|p.F1022Sfs*5|1|0.3|ENSG00000146350|chr6:121113166-121113166|A/-|frameshift_variant;ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;TBC1D32|p.K717Nfs*29|1|0.1|ENSG00000146350|chr6:121242207-121242207|T/-|frameshift_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	558.228007	1114.44146	0.28881	0.00016122	-0.54278	-0.000303	-0.25397	-0.00014177	558.7294205178689	27.979	0.15577	27.657	27.554	27.71	-0.32157	-0.037993	-0.00024044	NaN	55.503	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1882700			6633	3944	3681	3713							-0.11118120525907216
DSDYHQEAY	9	Unmodified	_DSDYHQEAY_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40719142-40721608:+|nuORF;ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	HCT116MG_D190212_S1	1	564.2172241210938	2	564.217443	1126.42033	0.33445	0.0001887	-0.10443	-5.8923E-05	0.23002	0.00012978	564.2174012499411	23.149	0.41684	23.149	22.949	23.366	0					11	7	3	0	0	0	0.0040527	1	8232	8232		149.91	114.98	1	13976000			6634	2182	3682	3714	6468	6468					-0.13782085834759528
DSDYHQEAY	9	Unmodified	_DSDYHQEAY_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40719142-40721608:+|nuORF;ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2174682617188	2	564.217443	1126.42033	0.39603	0.00022344	-0.0062839	-3.5455E-06	0.38974	0.0002199	564.2177636149706	23.552	0.41607	23.169	23.039	23.456	-0.38324					12	7	3	0	0	0	0.011082	1	8410	8410		110.67	84.407	1	30624000			6635	2182	3682	3714	6469	6469					-0.13782085834759528
DSDYHQEAY	9	Unmodified	_DSDYHQEAY_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40719142-40721608:+|nuORF;ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2178344726562	2	564.217443	1126.42033	0.38157	0.00021529	0.054818	3.0929E-05	0.43639	0.00024622	564.2173435052249	23.257	0.31267	23.217	23.031	23.343	-0.03968					11	5	3	0	0	0	0.023778	1	8209	8209		92.653	67.979	1	10055000			6636	2182	3682	3714	6470	6470					-0.13782085834759528
DSDYHQEAY	9	Unmodified	_DSDYHQEAY_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40719142-40721608:+|nuORF;ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	HCT116MG_D190212_S4	4	564.2169799804688	2	564.217443	1126.42033	0.21027	0.00011864	-0.56049	-0.00031624	-0.35023	-0.0001976	564.2171709376141	23.493	0.20804	23.246	23.116	23.324	-0.24775					6	3	2	0	0	0	0.39784	1	8256	8256		22.736	15.447	1	3000700			6637	2182	3682	3714	6471	6471					-0.13782085834759528
DSEEEEEVPQ	10	Unmodified	_DSEEEEEVPQ_					0	0	0		nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5;nc|ENSG00000290571|Q9HBQ8|GOLGA2P5	nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5	nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5	MULTI-MSMS	HCT116MG_D190212_S2	2	595.7380981445312	2	595.738405	1189.46226	0.21589	0.00012862	-0.51573	-0.00030724	-0.29984	-0.00017862	595.7380069053563	18.608	0.72907	18.245	18.113	18.842	-0.36325					33	13	4	0	0	0	0.50387	1	6409	6409		34.932	8.6639	1	154880000			6638	9677	3683	3715	6472	6472					-0.12489574936898862
DSEEEEEVPQ	10	Unmodified	_DSEEEEEVPQ_					0	0	0		nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5;nc|ENSG00000290571|Q9HBQ8|GOLGA2P5	nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5	nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5	MULTI-MSMS	HCT116MG_D190212_S3	3	595.7379150390625	2	595.738405	1189.46226	0.42639	0.00025402	-0.80919	-0.00048207	-0.3828	-0.00022805	595.7379286045475	17.947	0.41603	18.023	17.841	18.257	0.076334					12	7	3	0	0	0	0.72406	1	6070	6070		18.373	3.5348	1	15220000			6639	9677	3683	3715	6473	6473					-0.12489574936898862
DSERFFIRY	9	Unmodified	_DSERFFIRY_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-MSMS	HCT116MG_D190212_S2	2	616.8060913085938	2	616.806562	1231.59857	0.5322	0.00032826	-0.12968	-7.9985E-05	0.40252	0.00024828	616.8063834950768	45.062	0.26222	44.97	44.839	45.101	-0.092472					11	4	3	0	0	0	0.0046822	1	17133	17133		140.63	109.36	1	73168000			6640	4204	3684	3716	6474	6474					-0.00796371125056794
DSERFFIRY	9	Unmodified	_DSERFFIRY_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MSMS	HCT116MG_D190212_S2	2	411.5401611328125	3	411.540134	1231.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.135	1	45.042	44.542	45.542	-0.092472								0	0	0	0.022654	1	17156	17156		73.196	56.148	1				6641	4204	3684	3716	6475	6475					-0.00796371125056794
DSERFFIRY	9	Unmodified	_DSERFFIRY_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-MATCH	HCT116MG_D190212_S1	1		2	616.806562	1231.59857	0.50039	0.00030865	-0.037149	-2.2914E-05	0.46325	0.00028573	616.8063590757108	45.061	0.20803	45.061	44.931	45.139	0	0.045451	9.3305E-05	NaN	140.63	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13207000			6642	4204	3684	3716							-0.00796371125056794
DSERQNQEY	9	Unmodified	_DSERQNQEY_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S1	1	584.7471923828125	2	584.746899	1167.47924	0.57862	0.00033835	-0.22319	-0.00013051	0.35543	0.00020784	584.7469209851319	18.272	1.1465	18.272	18.037	19.183	0					59	21	5	0	0	0	0.003706	2	6250	6250;6485		155.03	118.9	1	701790000		+	6643	559	3685	3717	6476;6477	6476					-0.09779609540419187
DSERQNQEY	9	Unmodified	_DSERQNQEY_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S1	1	1168.4873046875	1	1168.48652	1167.47924	0.63818	0.0007457	-0.16515	-0.00019297	0.47303	0.00055273	1168.4864757674086	18.272	0.31287	18.272	18.089	18.402	0					13	5	3	0	0	0	0.0034966	1	6272	6272		166.77	124.81	1	22752000		+	6644	559	3685	3717	6478	6478					-0.09779609540419187
DSERQNQEY	9	Unmodified	_DSERQNQEY_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S2	2	584.747314453125	2	584.746899	1167.47924	0.083462	4.8804E-05	0.2579	0.00015081	0.34136	0.00019961	584.7473273812673	18.607	2.2445	18.244	18.061	20.305	-0.36325					96	42	7	0	0	0	0.0094709	3	6398	6398;6636;6882		114.65	65.73	1	3347499999.9999995		+	6645	559	3685	3717	6479;6480;6481	6479					-0.09779609540419187
DSERQNQEY	9	Unmodified	_DSERQNQEY_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S3	3	584.7471313476562	2	584.746899	1167.47924	0.29586	0.000173	0.002805	1.6402E-06	0.29867	0.00017464	584.7469939128674	17.947	1.0933	18.023	17.789	18.882	0.076334					59	20	6	0	0	0	0.0035183	2	6043	6043;6283		157.8	115.7	1	436870000		+	6646	559	3685	3717	6482;6483	6482					-0.09779609540419187
DSERQNQEY	9	Unmodified	_DSERQNQEY_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S3	3	1168.487548828125	1	1168.48652	1167.47924	0.32206	0.00037632	0.11277	0.00013178	0.43483	0.00050809	1168.4867675347245	17.947	0.25987	18.023	17.893	18.153	0.076334					10	4	3	0	0	0	0.0034669	1	6068	6068		163.69	119.83	1	15093000		+	6647	559	3685	3717	6484	6484					-0.09779609540419187
DSERQNQEY	9	Unmodified	_DSERQNQEY_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S4	4	584.7470092773438	2	584.746899	1167.47924	0.24189	0.00014145	0.27442	0.00016047	0.51631	0.00030191	584.7470071673566	18.149	0.41336	17.974	17.792	18.205	-0.17501					18	7	4	0	0	0	0.0058997	1	6075	6075		129.77	87.933	1	22339000		+	6648	559	3685	3717	6485	6485					-0.09779609540419187
DSFHEPSAF	9	Unmodified	_DSFHEPSAF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2789916992188	2	518.722164	1035.42977	0.081783	4.2423E-05	-0.27633	-0.00014334	-0.19454	-0.00010091	518.7218652187196	39.785	0.36056	39.713	39.533	39.893	-0.072899					8	6	2	0	0	0	0.49914	1	15046	15046		16.942	4.4107	1	11238000			6649	4239	3686	3718	6486	6486					-0.08652272758581603
DSFNRCSSY	9	Unmodified	_DSFNRCSSY_					0	0	0			REV__POM121L2|p.P496Qfs*17|1|0.14|ENSG00000158553|chr6:27310684-27310684|G/-|frameshift_variant	REV__POM121L2|p.P496Qfs*17|1|0.14|ENSG00000158553|chr6:27310684-27310684|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7167358398438	2	539.716556	1077.41856	0.48383	0.00026113	0.40369	0.00021788	0.88752	0.00047901	539.7166885682174	35.884	0.2804	35.584	35.449	35.729	-0.30042					8	5	2	0	0	0	0.53593	1	13258	13258		14.838	0	1	6088600	+		6650	12787	3687	3719	6487	6487					-0.11705418124347489
DSGSQKGPYVP	11	Unmodified	_DSGSQKGPYVP_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-MSMS	HCT116MG_D190212_S3	3	567.7753295898438	2	567.774928	1133.5353	0.41385	0.00023497	0.22468	0.00012757	0.63853	0.00036254	567.7750493405517	34.365	0.31209	34.071	33.871	34.184	-0.29419					8	5	2	0	0	0	0.68267	1	12657	12657		26.268	1.2772	1	2708100			6651	6701	3688	3720	6488	6488					-0.026123566329488312
DSHGDSEP	8	Unmodified	_DSHGDSEP_					0	0	0		ENST00000478660.6_1_6:45481365-45631456:+|nuORF	ENST00000478660.6_1_6:45481365-45631456:+|nuORF	ENST00000478660.6_1_6:45481365-45631456:+|nuORF	MSMS	HCT116MG_D190212_S2	2	422.15960693359375	2	422.159397	842.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.004	1	62.875	62.375	63.375	-0.12924								0	0	0	0.8837	1	24427	24427		0.69038	0	1				6652	8223	3689	3721	6489	6489					-0.12321984614800385
DSKWTMFWQWI	11	Unmodified	_DSKWTMFWQWI_					0	0	0		ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	MSMS	HCT116MG_D190212_S3	3	764.3573608398438	2	764.358105	1526.70166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.337	1	27.168	26.668	27.668	-0.16933								0	0	0	0.95731	1	9847	9847		2.4985	0	1				6653	8047	3690	3722	6490	6490					-0.04062626728750729
DSKWTMFWQWI	11	Unmodified	_DSKWTMFWQWI_					0	0	0		ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	ENST00000460933.5_1_3:133928664-133941275:-|nuORF	MSMS	HCT116MG_D190212_S4	4	764.3576049804688	2	764.358105	1526.70166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.177	1	26.866	26.366	27.366	-0.3114								0	0	0	0.95731	1	9717	9717		2.4985	0	1				6654	8047	3690	3722	6491	6491					-0.04062626728750729
DSKYMEETLC	10	Unmodified	_DSKYMEETLC_					0	0	0		ENST00000491840.1_1_13:26141407-26501380:+|nuORF;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2	ENST00000491840.1_1_13:26141407-26501380:+|nuORF	ENST00000491840.1_1_13:26141407-26501380:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	609.2890625	2	609.754489	1217.49443	0.62839	0.00038316	-3.1515	-0.0019216	-2.5231	-0.0015385	610.2546373060857	25.061	0.15603	24.686	24.556	24.712	-0.37521					4	2	2	0	0	0	0.29999	1	8978	8978		18.146	8.7632	1	4198100			6655	3219	3691	3723	6492	6492					-0.10562202059077208
DSLITEIWH	9	Unmodified	_DSLITEIWH_					0	0	0			REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	MSMS	HCT116MG_D190212_S3	3	557.0661010742188	2	557.282389	1112.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.807	1	41.504	41.004	42.004	-0.30257								0	0	0	0.76603	1	15554	15554		14.838	0	1		+		6656	11391	3692	3724	6493	6493					-0.001548647649542545
DSQDDDND	8	Unmodified	_DSQDDDND_					0	0	0			REV__ENST00000502249.6_1_4:119401524-119435218:+|nuORF	REV__ENST00000502249.6_1_4:119401524-119435218:+|nuORF	MSMS	HCT116MG_D190212_S3	3	462.1466064453125	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.221	1	13.29	12.79	13.79	0.069158								0	0	0	0.8837	1	4180	4180		0.79363	0	1		+		6657	10160	3693	3725	6494	6494					-0.18543503927901384
DSQLEPENED	10	Unmodified	_DSQLEPENED_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	HCT116MG_D190212_S1	1	588.3760986328125	2	588.238572	1174.46259	1.0037	0.0005904	-0.14457	-8.504E-05	0.85911	0.00050536	588.2386314241597	37.529	0.35977	37.529	37.348	37.707	0					16	6	4	0	0	0	0.29999	1	14078	14078		13.042	0	1	42408000	+		6658	14173	3694	3726	6495	6495					-0.11766155217014784
DSSARRLRR	9	Unmodified	_DSSARRLRR_					0	0	0			REV__ENST00000489456.1_1_2:220434036-220439523:+|nuORF	REV__ENST00000489456.1_1_2:220434036-220439523:+|nuORF	MSMS	HCT116MG_D190212_S1	1	372.883056640625	3	372.883005	1115.62719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.273	1	11.273	10.773	11.773	0								0	0	0	0.77008	1	3533	3533		0.26902	0	1		+		6659	16024	3695	3727	6496	6496					0.07399791294756142
DSVKVEEVA	9	Unmodified	_DSVKVEEVA_					0	0	0		ZNF14|p.N62Ifs*61|1|0.06|ENSG00000105708|chr19:19714097-19714097|T/-|frameshift_variant	ZNF14|p.N62Ifs*61|1|0.06|ENSG00000105708|chr19:19714097-19714097|T/-|frameshift_variant	ZNF14|p.N62Ifs*61|1|0.06|ENSG00000105708|chr19:19714097-19714097|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	488.7546691894531	2	488.253297	974.492041	0.23393	0.00011422	0.16007	7.8154E-05	0.394	0.00019237	488.2534402545883	27.73	0.20484	27.388	27.295	27.5	-0.34201					11	3	4	0	0	0	0.35128	1	10127	10127		25.399	0	1	54370000			6660	18718	3696	3728	6497	6497					0.0037745358977190335
DSVVVHVY	8	Unmodified	_DSVVVHVY_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2403869628906	2	459.239993	916.465432	0.065736	3.0189E-05	0.52482	0.00024102	0.59056	0.00027121	459.2402432946701	37.155	0.20538	37.052	36.923	37.129	-0.10318					5	3	2	0	0	0	0.55314	1	13943	13943		36.466	11.792	1	26645000			6661	5231	3697	3729	6498	6498					0.0038580948910293955
DSVVVHVY	8	Unmodified	_DSVVVHVY_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S3	3	459.2400817871094	2	459.239993	916.465432	0.47264	0.00021706	-0.16828	-7.7283E-05	0.30436	0.00013977	459.2398876400321	37.357	0.31218	37.055	36.873	37.185	-0.30137					10	5	2	0	0	0	0.060038	1	13837	13837		112.56	68.151	1	11811000			6662	5231	3697	3729	6499	6499					0.0038580948910293955
DSVVVHVY	8	Unmodified	_DSVVVHVY_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S3	3	917.473388671875	1	917.472709	916.465432	0.8223	0.00075444	0.14361	0.00013176	0.96591	0.0008862	917.4726633542333	37.357	0.20814	37.055	36.925	37.133	-0.30137					5	3	2	0	0	0	0.052199	1	13851	13851		120.86	77.889	1	6003000			6663	5231	3697	3729	6500	6500					0.0038580948910293955
DSVVVHVY	8	Unmodified	_DSVVVHVY_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S4	4	459.2406921386719	2	459.239993	916.465432	0.018411	8.4551E-06	0.34905	0.0001603	0.36746	0.00016875	459.2401126004731	37.442	0.2569	37.058	36.874	37.131	-0.3839					10	4	3	0	0	0	0.15305	2	13745	13730;13745		82.939	38.532	1	8322700			6664	5231	3697	3729	6501;6502	6502					0.0038580948910293955
DSVVVHVY	8	Unmodified	_DSVVVHVY_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S4	4	917.4722900390625	1	917.472709	916.465432	0.62426	0.00057274	-0.22351	-0.00020507	0.40074	0.00036767	917.4722088529826	37.451	0.20514	37.068	36.926	37.131	-0.3839					6	3	2	0	0	0	0.065436	1	13752	13752		106.85	72.658	1	3920100			6665	5231	3697	3729	6503	6503					0.0038580948910293955
DSYDGCDNSGD	11	Unmodified	_DSYDGCDNSGD_					0	0	0			REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	574.177978515625	2	574.177657	1146.34076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.628	1	12.628	12.128	13.128	0								0	0	0	0.96208	1	4063	4063		0	0	1		+		6666	13209	3698	3730	6504	6504					-0.2265552057106106
DSYSGDDFNVE	11	Unmodified	_DSYSGDDFNVE_					0	0	0			REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	MSMS	HCT116MG_D190212_S3	3	624.2392578125	2	624.238572	1246.46259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.294	1	46.979	46.479	47.479	-0.31525								0	0	0	0.95468	1	17757	17757		3.8763	2.0321	1		+		6667	11862	3699	3731	6505	6505					-0.1507815521702014
DSYSSSRSDLY	11	Unmodified	_DSYSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	HCT116MG_D190212_S3	3	640.2748413085938	2	640.275489	1278.53642	0.45674	0.00029244	-0.27843	-0.00017827	0.17831	0.00011417	640.2754604426304	30.808	0.20817	30.547	30.448	30.656	-0.26071					5	3	2	0	0	0	0.6229	1	11257	11257		32.898	13.641	1	3122000			6668	3980	3700	3732	6506	6506					-0.09170187054701273
DTADVPGPP	9	Unmodified	_DTADVPGPP_					0	0	0			REV__CCNK|p.P522Hfs*58|1|0.12|ENSG00000090061|chr14:99510600-99510600|C/-|frameshift_variant	REV__CCNK|p.P522Hfs*58|1|0.12|ENSG00000090061|chr14:99510600-99510600|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	435.2513732910156	2	434.705983	867.397412	-0.0023917	-1.0397E-06	0.227	9.8678E-05	0.22461	9.7638E-05	434.7059997761886	19.825	0.20715	19.45	19.351	19.558	-0.37503					5	3	2	0	0	0	0.20553	1	6857	6857		23.148	8.5667	1	3095700	+		6669	10123	3701	3733	6507	6507					-0.041590601615666856
DTAKKGFF	8	Unmodified	_DTAKKGFF_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;VPS52|p.Q497Pfs*33|1|0.25|ENSG00000223501|chr6:33264408-33264409|-/G|frameshift_variant;VPS52|p.L502Wfs*63|1|0.48|ENSG00000223501|chr6:33264395-33264395|C/-|frameshift_variant	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MSMS	HCT116MG_D190212_S3	3	457.24078369140625	2	457.242535	912.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.403	1	17.485	16.985	17.985	0.081358								0	0	0	0.65532	1	5844	5844		34.187	2.0704	1				6670	6478	3702	3734	6508	6508					0.010781133517184571
DTANSFFEL	9	Unmodified	_DTANSFFEL_					0	0	0			REV__TK2|p.V76I|1|0.37|ENSG00000166548|chr16:66541884-66541884|C/T|missense_variant	REV__TK2|p.V76I|1|0.37|ENSG00000166548|chr16:66541884-66541884|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1044.46435546875	1	1043.46802	1042.46074	0.83096	0.00086708	-1.7466	-0.0018226	-0.91568	-0.00095548	1043.4675166105949	45.194	0.62439	45.101	44.735	45.359	-0.092472					25	11	3	0	0	0	0.37539	1	17116	17116		24.021	0.87215	1	63754000	+		6671	13113	3703	3735	6509	6509					-0.05879119444330172
DTAQLWDL	8	Unmodified	_DTAQLWDL_					0	0	0		ENSG00000156787|ENST00000287380|TBC1D31;ENST00000524307.5_1_8:124089445-124141439:+|nuORF;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENST00000521980.1_1_8:124096343-124109714:+|nuORF;TBC1D31|p.F193Lfs*30|1|0.08|ENSG00000156787|chr8:123093646-123093646|T/-|frameshift_variant;ENST00000518099.5_1_8:124085009-124113262:+|nuORF	ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	MSMS	HCT116MG_D190212_S1	1	481.2369384765625	2	481.234907	960.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.262	1	18.262	17.762	18.762	0								0	0	0	0.65264	1	6267	6267		34.402	9.0024	1				6672	4298	3704	3736	6510	6510					-0.02654798236142142
DTAQREGP	8	Unmodified	_DTAQREGP_					0	0	0			REV__ENST00000423298.5_1_3:185677803-185689513:+|nuORF	REV__ENST00000423298.5_1_3:185677803-185689513:+|nuORF	MSMS	HCT116MG_D190212_S2	2	437.206787109375	2	437.206681	872.398809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.241	1	11.952	11.452	12.452	-0.28953								0	0	0	0.72655	1	3995	3995		28.487	3.0875	1		+		6673	15526	3705	3737	6511	6511					-0.04249426072806273
DTAQYRASA	9	Unmodified	_DTAQYRASA_					0	0	0		MYOM1|p.P866Rfs*31|1|0.35|ENSG00000101605|chr18:3129429-3129429|G/-|frameshift_variant;nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1	MYOM1|p.P866Rfs*31|1|0.35|ENSG00000101605|chr18:3129429-3129429|G/-|frameshift_variant	MYOM1|p.P866Rfs*31|1|0.35|ENSG00000101605|chr18:3129429-3129429|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	491.7517395019531	2	491.733063	981.451573	0.031518	1.5499E-05	-0.19695	-9.6848E-05	-0.16543	-8.1349E-05	491.7329639032768	20.498	0.26039	20.532	20.35	20.61	0.034473					6	4	2	0	0	0	0.18296	1	7084	7084		32.786	11.039	1	2580100			6674	1800	3706	3738	6512	6512					-0.039894680100019286
DTASLLSGLV	10	Unmodified	_DTASLLSGLV_					0	0	0		TICAM1|p.P642Hfs*50|6|0.25|ENSG00000127666|chr19:4816453-4816453|G/-|frameshift_variant;ENSG00000127666|ENST00000248244|TICAM1	TICAM1|p.P642Hfs*50|6|0.25|ENSG00000127666|chr19:4816453-4816453|G/-|frameshift_variant	TICAM1|p.P642Hfs*50|6|0.25|ENSG00000127666|chr19:4816453-4816453|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	488.27099609375	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.236	1	35.936	35.436	36.436	-0.30042								0	0	0	0.82636	1	13382	13382		25.399	6.1423	1				6675	2976	3707	3739	6513	6513					0.04014330486484141
DTAVLFSHQKR	11	Unmodified	_DTAVLFSHQKR_					0	0	0		ENST00000319410.9_1_16:75661640-75661775:-|nuORF	ENST00000319410.9_1_16:75661640-75661775:-|nuORF	ENST00000319410.9_1_16:75661640-75661775:-|nuORF	MSMS	HCT116MG_D190212_S2	2	651.4130249023438	2	651.351668	1300.68878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.221	1	36.093	35.593	36.593	-0.12799								0	0	0	0.92235	1	13538	13538		17.113	1.8644	1				6676	7095	3708	3740	6514	6514					0.05046678203370902
DTAVYYCIVRV	11	Unmodified	_DTAVYYCIVRV_					0	0	0		nc|ENSG00000211807|A0A087WT03|TRAV26-1	nc|ENSG00000211807|A0A087WT03|TRAV26-1	nc|ENSG00000211807|A0A087WT03|TRAV26-1	MSMS	HCT116MG_D190212_S4	4	651.3348388671875	2	651.331556	1300.64856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.37	1	35.984	35.484	36.484	-0.38558								0	0	0	0.94538	1	13307	13307		8.7454	3.0136	1				6677	9630	3709	3741	6515	6515					0.010259954885441402
DTAWHEDGL	9	Unmodified	_DTAWHEDGL_					0	0	0			REV__nc|ENSG00000137843|Q9NQU5-2|PAK6	REV__nc|ENSG00000137843|Q9NQU5-2|PAK6	MSMS	HCT116MG_D190212_S4	4	522.2239379882812	2	522.225071	1042.43559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.587	1	17.416	16.916	17.916	-0.17047								0	0	0	0.76694	1	5844	5844		11.64	0.81637	1		+		6678	12195	3710	3742	6516	6516					-0.0839317424690762
DTDAQQAFKY	10	Unmodified	_DTDAQQAFKY_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;LARP4|p.A279Cfs*2|1|0.18|ENSG00000161813|chr12:50453483-50453484|-/T|frameshift_variant;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S2	2	594.2733764648438	2	593.772385	1185.53022	0.70607	0.00041924	0.56181	0.00033359	1.2679	0.00075283	593.7727874846094	34.997	0.31062	34.839	34.657	34.968	-0.15834					9	5	2	0	0	0	9.001E-05	1	13049	13049		195.45	151.59	1	33817000			6679	4497	3711	3743	6517	6517					-0.0551266049556034
DTDAQQAFKY	10	Unmodified	_DTDAQQAFKY_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;LARP4|p.A279Cfs*2|1|0.18|ENSG00000161813|chr12:50453483-50453484|-/T|frameshift_variant;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MATCH	HCT116MG_D190212_S1	1		2	593.772385	1185.53022	0.70922	0.00042112	-1.0036	-0.00059591	-0.29437	-0.00017479	593.7714553876726	34.987	0.25992	34.987	34.804	35.064	0	0.050534	-0.0013787	NaN	195.45	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7021500			6680	4497	3711	3743							-0.0551266049556034
DTDAQQAFKY	10	Unmodified	_DTDAQQAFKY_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;LARP4|p.A279Cfs*2|1|0.18|ENSG00000161813|chr12:50453483-50453484|-/T|frameshift_variant;LARP4|p.N373Ifs*3|1|0.26|ENSG00000161813|chr12:50454408-50454408|A/-|frameshift_variant;nc|ENSG00000161813|Q71RC2-7|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MATCH	HCT116MG_D190212_S3	3		2	593.772385	1185.53022	0.8425	0.00050025	-0.7402	-0.00043951	0.10229	6.0739E-05	593.7718752633943	35.282	0.2079	34.983	34.853	35.061	-0.29922	0.046794	-0.0010659	NaN	195.45	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5784500			6681	4497	3711	3743							-0.0551266049556034
DTDASGGLTK	10	Unmodified	_DTDASGGLTK_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S2	2	482.7325744628906	2	482.732729	963.450904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.959	1	18.59	18.09	19.09	-0.3695								0	0	0	0.38707	1	6547	6547		53.404	20.618	1				6682	3119	3712	3744	6518	6518					-0.03228307449717249
DTDASGGLTK	10	Unmodified	_DTDASGGLTK_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S2	2	482.73291015625	2	482.732729	963.450904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.981	1	18.611	18.111	19.111	-0.3695								0	0	0	0.83884	1	6555	6555		23.79	2.9186	1				6683	3119	3712	3744	6519	6519					-0.03228307449717249
DTDDEIAKY	9	Unmodified	_DTDDEIAKY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENST00000503126.1_1_5:179133324-179137021:+|nuORF	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S2	2	535.23828125	2	535.237844	1068.46113	0.31346	0.00016778	0.49657	0.00026578	0.81002	0.00043356	535.2380381406118	30.749	0.25916	30.482	30.353	30.612	-0.26704					7	4	2	0	0	0	0.030723	1	11348	11348		85.642	35.709	1	10207000			6684	2954	3713	3745	6520	6520					-0.07035744515133047
DTDDEIAKY	9	Unmodified	_DTDDEIAKY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant;ENST00000503126.1_1_5:179133324-179137021:+|nuORF	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MSMS	HCT116MG_D190212_S3	3	535.2384033203125	2	535.237844	1068.46113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.972	1	30.711	30.211	31.211	-0.26071								0	0	0	0.0058398	1	11298	11298		114.65	55.97	1				6685	2954	3713	3745	6521	6521					-0.07035744515133047
DTDDRTEGY	9	Unmodified	_DTDDRTEGY_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	HCT116MG_D190212_S2	2	536.2150268554688	2	536.2149	1070.41525	0.38334	0.00020555	-0.5793	-0.00031063	-0.19596	-0.00010508	536.2146713598906	20.271	0.26192	19.891	19.761	20.023	-0.37949					9	4	3	0	0	0	0.02327	1	7095	7095		93.166	51.326	1	10856000			6686	3715	3714	3746	6522	6522					-0.11714389697363004
DTDDRTEGY	9	Unmodified	_DTDDRTEGY_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2147216796875	2	536.2149	1070.41525	0.44533	0.00023879	0.027382	1.4682E-05	0.47271	0.00025348	536.2148544211979	19.768	0.31249	19.828	19.646	19.959	0.05983					7	5	2	0	0	0	0.032914	1	6803	6803		83.429	45.253	1	5760200			6687	3715	3714	3746	6523	6523					-0.11714389697363004
DTDDVPVP	8	Unmodified	_DTDDVPVP_					0	0	0		ENSG00000104805|ENST00000405315|NUCB1;ENST00000485798.5_1_19:49403599-49425678:+|nuORF;ENST00000492367.1_1_19:49422384-49425678:+|nuORF	ENSG00000104805|ENST00000405315|NUCB1	ENSG00000104805|ENST00000405315|NUCB1	MSMS	HCT116MG_D190212_S3	3	429.0885925292969	2	429.19799	856.381428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.625	1	28.419	27.919	28.919	-0.20593								0	0	0	0.8837	1	10366	10366		10.183	4.423	1				6688	1951	3715	3747	6524	6524					-0.052507663984670216
DTDGFVHLS	9	Unmodified	_DTDGFVHLS_					0	0	0			REV__nc|ENSG00000262664|Q8WZ82|OVCA2	REV__nc|ENSG00000262664|Q8WZ82|OVCA2	MULTI-MSMS	HCT116MG_D190212_S1	1	495.7300720214844	2	495.729989	989.445425	0.20516	0.0001017	-0.025047	-1.2417E-05	0.18011	8.9285E-05	495.73006969518065	42.716	0.30947	42.716	42.538	42.847	0					9	5	2	0	0	0	0.53593	1	16156	16156		14.838	2.3067	1	6874500	+		6689	14646	3716	3748	6525	6525					-0.049719862415145144
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	HCT116MG_D190212_S1	1	615.2828979492188	2	615.28292	1228.55129	0.40123	0.00024687	-0.27584	-0.00016972	0.12539	7.7149E-05	615.282767354421	42.977	0.26051	42.977	42.795	43.056	0					10	4	3	0	0	0	5.2262E-08	1	16227	16227		223.06	179.2	1	27697000			6690	2827	3717	3749	6526	6526					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-SECPEP	HCT116MG_D190212_S1	1	411.21429443359375	3	410.524372	1228.55129	-0.14519	-5.9603E-05	-0.1769	-7.262E-05	-0.32208	-0.00013222	410.5241442468176	42.977	0.26051	42.977	42.795	43.056	0					8	4	3	0	0	0	0.2338	1	16242	16242		9.544	9.544	1	9031500			6691	2827	3717	3749	6527	6527					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	HCT116MG_D190212_S2	2	615.2821655273438	2	615.28292	1228.55129	0.44317	0.00027268	-0.015634	-9.6192E-06	0.42754	0.00026306	615.2829125175851	42.888	0.35984	42.818	42.637	42.997	-0.069984					17	6	4	0	0	0	0.0030529	1	16241	16241		181.33	139.49	1	269340000			6692	2827	3717	3749	6528	6528					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	HCT116MG_D190212_S2	2	410.5245666503906	3	410.524372	1228.55129	-0.075866	-3.1145E-05	0.57352	0.00023545	0.49766	0.0002043	410.5245298003863	42.865	0.3087	42.795	42.637	42.946	-0.069984					12	5	3	0	0	0	0.0040473	1	16252	16252		121.53	99.735	1	54682000			6693	2827	3717	3749	6529	6529					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	HCT116MG_D190212_S3	3	615.2827758789062	2	615.28292	1228.55129	0.45929	0.0002826	-0.91866	-0.00056524	-0.45937	-0.00028264	615.2821934426294	43.211	0.27156	42.906	42.762	43.033	-0.30472					24	9	3	0	0	0	5.2899E-08	1	16100	16100		222.91	170.64	1	35361000			6694	2827	3717	3749	6530	6530					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	HCT116MG_D190212_S3	3	410.8590087890625	3	410.524372	1228.55129	0.11073	4.5458E-05	-0.19383	-7.9572E-05	-0.083099	-3.4114E-05	410.52418260479243	43.191	0.17319	42.886	42.81	42.984	-0.30472					14	6	3	0	0	0	0.010834	1	16108	16108		90.135	70.773	1	15934000			6695	2827	3717	3749	6531	6531					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	HCT116MG_D190212_S4	4	615.2825927734375	2	615.28292	1228.55129	0.64321	0.00039576	-0.88501	-0.00054453	-0.24179	-0.00014877	615.2822546658446	43.26	0.18621	42.886	42.831	43.018	-0.37442					21	14	2	0	0	0	0.0035933	1	15898	15898		176.84	129.09	1	12092000			6696	2827	3717	3749	6532	6532					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MSMS	HCT116MG_D190212_S4	4	410.5244445800781	3	410.524372	1228.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.306	1	42.931	42.431	43.431	-0.37433								0	0	0	0.14112	1	15917	15917		40.725	28.497	1				6697	2827	3717	3749	6533	6533					-0.053846503960585324
DTDISLIRY	9	Unmodified	_DTDISLIRY_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	548.2880859375	2	548.287671	1094.56079	0.5827	0.00031949	-0.35891	-0.00019679	0.22379	0.0001227	548.2873677625718	46.829	0.25945	46.829	46.699	46.958	0					10	4	3	0	0	0	0.0035183	1	17788	17788		157.8	92.56	1	40094000			6698	1755	3718	3750	6534	6534					0.017291178894765835
DTDISLIRY	9	Unmodified	_DTDISLIRY_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	548.7896728515625	2	548.287671	1094.56079	0.81035	0.00044431	-0.29681	-0.00016274	0.51355	0.00028157	548.2874362285872	46.943	0.51463	46.821	46.563	47.078	-0.12175					17	9	3	0	0	0	0.0023719	3	17889	17889;17907;17928		185.05	110.12	1	43414000			6699	1755	3718	3750	6535;6536;6537	6535					0.017291178894765835
DTDISLIRY	9	Unmodified	_DTDISLIRY_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	548.2880249023438	2	548.287671	1094.56079	0.40306	0.00022099	0.18051	9.897E-05	0.58356	0.00031996	548.2877643599097	47.158	0.36468	46.844	46.594	46.959	-0.31405					11	6	3	0	0	0	0.0027398	1	17705	17705		183.04	114.96	1	18415000			6700	1755	3718	3750	6538	6538					0.017291178894765835
DTDISLIRY	9	Unmodified	_DTDISLIRY_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MSMS	HCT116MG_D190212_S4	4	548.2879638671875	2	548.287671	1094.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.259	1	46.889	46.389	47.389	-0.37038								0	0	0	0.014652	1	17475	17475		99.755	55.897	1				6701	1755	3718	3750	6539	6539					0.017291178894765835
DTDLLEQQDI	10	Unmodified	_DTDLLEQQDI_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MSMS	HCT116MG_D190212_S2	2	595.27685546875	2	595.282783	1188.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.993	1	34.835	34.335	35.335	-0.15834								0	0	0	0.90475	1	13038	13038		14.838	4.0143	1				6702	1728	3719	3751	6540	6540					-0.03572114906569368
DTDPSIYR	8	Unmodified	_DTDPSIYR_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MSMS	HCT116MG_D190212_S1	1	483.7301940917969	2	483.729989	965.445425	0.22156	0.00010718	-0.46652	-0.00022567	-0.24496	-0.0001185	483.72987760667354	33.754	0.41617	33.754	33.556	33.972	0					13	7	2	0	0	0	0.22822	1	12523	12523		68.081	6.7232	1	7277100			6703	9596	3720	3752	6541	6541					-0.03867986241516519
DTDPSIYR	8	Unmodified	_DTDPSIYR_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MSMS	HCT116MG_D190212_S2	2	483.7295837402344	2	483.729989	965.445425	0.16767	8.1108E-05	0.1061	5.1323E-05	0.27377	0.00013243	483.7299156582628	33.975	0.62334	33.799	33.5	34.124	-0.17511					22	11	3	0	0	0	0.12693	2	12591	12591;12695		88.904	7.2905	1	52560000			6704	9596	3720	3752	6542;6543	6542					-0.03867986241516519
DTDPSIYR	8	Unmodified	_DTDPSIYR_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MSMS	HCT116MG_D190212_S2	2	966.4539794921875	1	966.452701	965.445425	0.62294	0.00060205	0.65602	0.00063401	1.279	0.0012361	966.4530746496301	33.929	0.25997	33.754	33.604	33.864	-0.17512					8	4	2	0	0	0	0.016574	1	12637	12637		156.16	63.334	1	14109000			6705	9596	3720	3752	6544	6544					-0.03867986241516519
DTDPSIYR	8	Unmodified	_DTDPSIYR_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MSMS	HCT116MG_D190212_S3	3	483.7300109863281	2	483.729989	965.445425	0.21778	0.00010534	0.23347	0.00011294	0.45125	0.00021828	483.7299774105926	34.14	0.62461	33.845	33.559	34.184	-0.29419					25	11	3	0	0	0	0.12693	1	12537	12537		88.904	3.5469	1	37066000			6706	9596	3720	3752	6545	6545					-0.03867986241516519
DTDPSIYR	8	Unmodified	_DTDPSIYR_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MSMS	HCT116MG_D190212_S3	3	966.4537353515625	1	966.452701	965.445425	0.63572	0.0006144	-0.096197	-9.2969E-05	0.53953	0.00052143	966.4526525317513	34.169	0.31248	33.875	33.663	33.975	-0.29419					12	5	3	0	0	0	0.04112	1	12547	12547		133.7	40.88	1	6321400			6707	9596	3720	3752	6546	6546					-0.03867986241516519
DTDPSIYR	8	Unmodified	_DTDPSIYR_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MATCH	HCT116MG_D190212_S4	4		2	483.729989	965.445425	0.1242	6.0081E-05	0.16532	7.9971E-05	0.28953	0.00014005	483.729982709306	34.225	0.46732	33.84	33.568	34.035	-0.38558	0.030336	2.8372E-05	NaN	88.904	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17485000			6708	9596	3720	3752							-0.03867986241516519
DTDSQRLAY	9	Unmodified	_DTDSQRLAY_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7515258789062	2	534.751453	1067.48835	0.58167	0.00031105	-0.23059	-0.00012331	0.35108	0.00018774	534.7513084507523	29.21	0.20815	28.988	28.89	29.098	-0.22195					5	3	2	0	0	0	0.030723	1	10624	10624		85.642	41.869	1	4614700			6709	1787	3721	3753	6547	6547					-0.042692161840932386
DTDVISYSTG	10	Unmodified	_DTDVISYSTG_					0	0	0		tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2380981445312	2	529.237844	1056.46113	0.33974	0.0001798	0.22194	0.00011746	0.56168	0.00029726	529.2379376566328	38.849	0.31177	38.547	38.404	38.716	-0.30137					8	5	2	0	0	0	0.76634	1	14415	14415		14.838	2.3067	1	3486800			6710	18568	3722	3754	6548	6548					-0.06483744515139733
DTDVLESFL	9	Unmodified	_DTDVLESFL_					0	0	0		RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF;RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	519.753662109375	2	519.75313	1037.49171	0.24715	0.00012845	0.65365	0.00033974	0.9008	0.00046819	519.7533457005138	51.038	0.31375	50.724	50.594	50.907	-0.31381					13	5	3	0	0	0	0.17018	1	19283	19283		44.407	14.182	1	12572000			6711	2552	3723	3755	6549	6549					-0.025539661300854277
DTEAFHVAK	9	Unmodified	_DTEAFHVAK_					0	0	0			REV__PPP1R36|p.N167Tfs*12|4|0.24|ENSG00000165807|chr14:64568408-64568408|A/-|frameshift_variant	REV__PPP1R36|p.N167Tfs*12|4|0.24|ENSG00000165807|chr14:64568408-64568408|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	509.7333984375	2	509.253631	1016.49271	0.2103	0.0001071	0.37462	0.00019078	0.58492	0.00029787	509.25370204644946	21.53	0.7789	21.312	20.802	21.581	-0.21832					23	14	2	0	0	0	0.22393	1	7299	7299		13.906	13.906	1	2973800	+		6712	13078	3724	3756	6550	6550					-0.014877069705221402
DTECDNSGPQ	10	Unmodified	_DTECDNSGPQ_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MSMS	HCT116MG_D190212_S3	3	533.2547607421875	2	533.19311	1064.37167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.814	1	28.592	28.092	29.092	-0.22195								0	0	0	0.94551	1	10443	10443		5.7319	0.97584	1				6713	6157	3725	3757	6551	6551					-0.15794322466149424
DTEFPNFKY	9	Unmodified	_DTEFPNFKY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	580.766845703125	2	580.766571	1159.51859	0.50513	0.00029336	0.68379	0.00039712	1.1889	0.00069048	581.2684981553687	47.31	0.6361	47.31	47.01	47.646	0					19	12	2	0	0	0	0.047849	1	17995	17995		75.761	75.761	1	12269000			6714	3183	3726	3758	6552	6552					-0.05478857518892255
DTEFPNFKY	9	Unmodified	_DTEFPNFKY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S2	2	581.2677612304688	2	580.766571	1159.51859	0.6796	0.00039469	-0.084094	-4.8839E-05	0.5955	0.00034585	580.7664221220244	47.518	0.77569	47.396	46.974	47.75	-0.12175					33	14	3	0	0	0	0.0062667	1	18067	18067		126.57	70.389	1	30323000			6715	3183	3726	3758	6553	6553					-0.05478857518892255
DTEKEHHTP	9	Unmodified	_DTEKEHHTP_					0	0	0		ENSG00000139797|ENST00000267291|RNF113B	ENSG00000139797|ENST00000267291|RNF113B	ENSG00000139797|ENST00000267291|RNF113B	MULTI-MSMS	HCT116MG_D190212_S1	1	546.9550170898438	2	547.249077	1092.4836	0.50219	0.00027482	0.038012	2.0802E-05	0.5402	0.00029563	547.2492175512514	19.947	0.67917	19.947	19.704	20.383	0					25	12	3	0	0	0	0.55223	1	6856	6856		13.906	0	1	8782100			6716	3647	3727	3759	6554	6554					-0.058941003268500936
DTEKELQALY	10	Unmodified	_DTEKELQALY_					0	0	0		nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3	nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432-4|EIF4G3	MULTI-MSMS	HCT116MG_D190212_S2	2	605.8049926757812	2	605.303518	1208.59248	0.78789	0.00047691	-0.68315	-0.00041352	0.10473	6.3396E-05	605.3030861085787	43.914	0.30852	43.835	43.659	43.967	-0.078373					11	5	3	0	0	0	0.036884	1	16672	16672		96.936	26.604	1	44387000			6717	1309	3728	3760	6555	6555					-0.0034693414722823945
DTELSQVTY	9	Unmodified	_DTELSQVTY_					0	0	0			REV__ENST00000565278.1_1_16:72763309-72763579:+|nuORF	REV__ENST00000565278.1_1_16:72763309-72763579:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1056.4874267578125	1	1055.48915	1054.48187	0.85822	0.00090584	-4.1508	-0.0043811	-3.2926	-0.0034753	1056.486410826946	32.948	0.31858	32.663	32.404	32.722	-0.28511					16	6	4	0	0	0	0.23138	1	12074	12074		37.974	5.1883	1	12602000	+		6718	16532	3729	3761	6556	6556					-0.04319154135464487
DTENNLNQGP	10	Unmodified	_DTENNLNQGP_					0	0	0		ENST00000504117.1_1_5:93752768-93812878:-|nuORF;nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825	ENST00000504117.1_1_5:93752768-93812878:-|nuORF	ENST00000504117.1_1_5:93752768-93812878:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	551.2701416015625	2	551.243992	1100.47343	0.46548	0.00025659	-0.3518	-0.00019393	0.11368	6.2664E-05	551.2430253348806	36.623	0.31022	36.508	36.292	36.602	-0.11478					9	5	3	0	0	0	0.29999	1	13734	13734		8.7454	8.7454	1	7037300			6719	5814	3730	3762	6557	6557					-0.07278708052103866
DTEPPVQT	8	Unmodified	_DTEPPVQT_					0	0	0		ENST00000491136.6_1_1:52826615-52827248:-|nuORF;ENST00000460261.5_1_1:52825135-52826759:-|nuORF;CC2D1B|p.L517Cfs*53|1|0.58|ENSG00000154222|chr1:52357829-52357829|G/-|frameshift_variant;CC2D1B|p.F769Afs*5|1|0.54|ENSG00000154222|chr1:52354893-52354894|-/CC|frameshift_variant;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B	ENST00000491136.6_1_1:52826615-52827248:-|nuORF	ENST00000491136.6_1_1:52826615-52827248:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.7114562988281	2	443.711265	885.407977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.82	1	28.82	28.32	29.32	0								0	0	0	0.79325	1	10511	10511		23.148	0	1				6720	341	3731	3763	6558	6558					-0.03931077507138525
DTEQDCYWHQP	11	Unmodified	_DTEQDCYWHQP_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MSMS	HCT116MG_D190212_S1	1	711.6637573242188	2	711.274966	1420.53538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.731	1	30.731	30.231	31.231	0								0	0	0	0.95636	1	11282	11282		2.9952	1.6657	1		+		6721	10879	3732	3764	6559	6559					-0.15806724695266894
DTERKYHLRY	10	Unmodified	_DTERKYHLRY_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	MSMS	HCT116MG_D190212_S2	2	460.90509033203125	3	460.905476	1379.6946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.368	1	23.988	23.488	24.488	-0.38003								0	0	0	0.92238	1	8729	8729		10.899	4.6646	1				6722	9373	3733	3765	6560	6560					0.019937767150395302
DTETRSEY	8	Unmodified	_DTETRSEY_					0	0	0			REV__ENSG00000197122|ENST00000373578|SRC	REV__ENSG00000197122|ENST00000373578|SRC	MSMS	HCT116MG_D190212_S2	2	500.71429443359375	2	500.714536	999.414519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.584	1	17.232	16.732	17.732	-0.35232								0	0	0	0.8837	1	5993	5993		14.838	0.25658	1		+		6723	14057	3734	3766	6561	6561					-0.08521184346420796
DTFIVRVAD	9	Unmodified	_DTFIVRVAD_					0	0	0			REV__nc|ENSG00000154258|Q8IUA7-2|ABCA9	REV__nc|ENSG00000154258|Q8IUA7-2|ABCA9	MSMS	HCT116MG_D190212_S4	4	518.2769165039062	2	518.277106	1034.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.527	1	25.248	24.748	25.748	-0.27958								0	0	0	0.30238	1	9050	9050		39.95	5.548	1		+		6724	9823	3735	3767	6562	6562					0.023771525806068894
DTFKMNASKI	10	Unmodified	_DTFKMNASKI_					0	0	0			REV__SRMS|p.L267F|1|0.18|ENSG00000125508|chr20:63542310-63542310|G/A|missense_variant	REV__SRMS|p.L267F|1|0.18|ENSG00000125508|chr20:63542310-63542310|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	577.7973022460938	2	577.797349	1153.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.32	1	35.32	34.82	35.82	0								0	0	0	0.88261	1	13134	13134		18.146	0	1		+		6725	17591	3736	3768	6563	6563					0.009497509087395883
DTFNIYYVQSY	11	Unmodified	_DTFNIYYVQSY_					0	0	0			REV__nc|ENSG00000158813|Q92838-9|EDA	REV__nc|ENSG00000158813|Q92838-9|EDA	MULTI-MSMS	HCT116MG_D190212_S2	2	1412.6376953125	1	1412.63687	1411.6296	0.76325	0.0010782	0.015855	2.2397E-05	0.77911	0.0011006	1412.6369229644959	56.313	0.20682	56.13	56.001	56.207	-0.18261					8	3	3	0	0	0	0.71182	1	21735	21735		17.443	0.32975	1	54735000	+		6726	17179	3737	3769	6564	6564					-0.059752626014642374
DTFNIYYVQSY	11	Unmodified	_DTFNIYYVQSY_					0	0	0			REV__nc|ENSG00000158813|Q92838-9|EDA	REV__nc|ENSG00000158813|Q92838-9|EDA	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1412.63687	1411.6296	0.6984	0.00098659	-0.15547	-0.00021962	0.54293	0.00076696	1412.636099197702	56.145	0.20631	56.145	56.015	56.222	0	0.014926	-0.00016933	NaN	17.443	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24846000	+		6727	17179	3737	3769							-0.059752626014642374
DTFNIYYVQSY	11	Unmodified	_DTFNIYYVQSY_					0	0	0			REV__nc|ENSG00000158813|Q92838-9|EDA	REV__nc|ENSG00000158813|Q92838-9|EDA	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1412.63687	1411.6296	0.76325	0.0010782	0.015855	2.2397E-05	0.77911	0.0011006	1412.6369229644959	56.313	0.20682	56.13	56.001	56.207	-0.18261	0.00017464	7.2689E-05	NaN	17.443	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54735000	+		6728	17179	3737	3769							-0.059752626014642374
DTFNIYYVQSY	11	Unmodified	_DTFNIYYVQSY_					0	0	0			REV__nc|ENSG00000158813|Q92838-9|EDA	REV__nc|ENSG00000158813|Q92838-9|EDA	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1412.63687	1411.6296	0.96577	0.0013643	-0.34933	-0.00049348	0.61644	0.00087081	1412.6376743617857	56.407	0.1574	56.124	56.045	56.202	-0.28367	-0.0064573	-0.00044318	NaN	17.443	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2218900	+		6729	17179	3737	3769							-0.059752626014642374
DTFNIYYVQSY	11	Unmodified	_DTFNIYYVQSY_					0	0	0			REV__nc|ENSG00000158813|Q92838-9|EDA	REV__nc|ENSG00000158813|Q92838-9|EDA	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1412.63687	1411.6296	0.4655	0.00065759	0.37842	0.00053458	0.84393	0.0011922	1412.6386276931973	56.428	0.15778	56.122	56.042	56.2	-0.30626	-0.008643	0.00058487	NaN	17.443	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	864060	+		6730	17179	3737	3769							-0.059752626014642374
DTFYEVDP	8	Unmodified	_DTFYEVDP_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	MULTI-MSMS	HCT116MG_D190212_S1	1	493.2106018066406	2	493.211098	984.407643	0.3045	0.00015018	-0.27479	-0.00013553	0.029703	1.465E-05	493.21076383530146	23.057	0.3641	23.057	22.898	23.262	0					10	6	2	0	0	0	0.50777	1	8209	8209		40.449	40.449	1	3873300	+		6731	16877	3738	3770	6565	6565					-0.08518497226987165
DTFYEVDP	8	Unmodified	_DTFYEVDP_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	MULTI-SECPEP	HCT116MG_D190212_S1	1	492.9369201660156	2	493.211098	984.407643	0.3045	0.00015018	-0.27479	-0.00013553	0.029703	1.465E-05	493.21076383530146	23.057	0.3641	23.057	22.898	23.262	0					10	6	2	0	0	0	0.24076	1	8173	8173		40.449	26.543	1	3873300	+		6732	16877	3738	3770	6566	6566					-0.08518497226987165
DTFYEVDP	8	Unmodified	_DTFYEVDP_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	493.2112731933594	2	493.211098	984.407643	0.25288	0.00012472	0.38246	0.00018863	0.63533	0.00031335	493.21121775930214	23.605	0.57072	23.221	22.78	23.351	-0.38324					16	10	2	0	0	0	0.60268	1	8429	8429		32.117	12.678	1	15273000	+		6733	16877	3738	3770	6567	6567					-0.08518497226987165
DTGAASHP	8	Unmodified	_DTGAASHP_					0	0	0			REV__ENST00000347528.8_2_8:41510898-41511414:-|nuORF	REV__ENST00000347528.8_2_8:41510898-41511414:-|nuORF	MSMS	HCT116MG_D190212_S2	2	378.16937255859375	2	378.169567	754.324582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.535	1	22.15	21.65	22.65	-0.3852								0	0	0	0.8837	1	7988	7988		5.7604	2.8712	1		+		6734	15016	3739	3771	6568	6568					-0.0624076916433296
DTGRARAAPG	10	Unmodified	_DTGRARAAPG_					0	0	0			REV__ENST00000358173.7_1_7:100424774-100424903:-|nuORF	REV__ENST00000358173.7_1_7:100424774-100424903:-|nuORF	MSMS	HCT116MG_D190212_S4	4	486.25494384765625	2	486.254497	970.494441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.754	1	25.464	24.964	25.964	-0.29022								0	0	0	0.91906	1	9142	9142		11.64	1.5664	1		+		6735	15059	3740	3772	6569	6569					0.00801346838079553
DTGVEHCLP	9	Unmodified	_DTGVEHCLP_					0	0	0		ENST00000252485.8_1_19:45381953-45382088:+|nuORF	ENST00000252485.8_1_19:45381953-45382088:+|nuORF	ENST00000252485.8_1_19:45381953-45382088:+|nuORF	MSMS	HCT116MG_D190212_S4	4	485.7186279296875	2	485.718567	969.422581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.275	1	33.889	33.389	34.389	-0.38558								0	0	0	0.69272	1	12509	12509		19.439	1.2926	1				6736	6803	3741	3773	6570	6570					-0.06335328630655113
DTHAFFPPKIV	11	Unmodified	_DTHAFFPPKIV_					0	0	0		ENST00000368046.7_2_1:160648572-160648665:-|nuORF	ENST00000368046.7_2_1:160648572-160648665:-|nuORF	ENST00000368046.7_2_1:160648572-160648665:-|nuORF	MSMS	HCT116MG_D190212_S4	4	636.8112182617188	2	636.342781	1270.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.601	1	40.223	39.723	40.723	-0.37828								0	0	0	0.92235	1	14901	14901		17.113	7.7298	1				6737	7396	3742	3774	6571	6571					0.04649962948519715
DTHMKYQP	8	Unmodified	_DTHMKYQP_					0	0	0			REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MULTI-MSMS	HCT116MG_D190212_S3	3	510.2348327636719	2	510.234384	1018.45422	0.33777	0.00017234	0.013999	7.1427E-06	0.35177	0.00017948	510.2343570459138	29.978	0.31612	29.742	29.61	29.926	-0.23655					6	5	2	0	0	0	0.71077	1	10929	10929		21.747	9.2151	1	4431200	+		6738	13512	3743	3775	6572	6572					-0.054273358766863566
DTHMKYQP	8	Unmodified	_DTHMKYQP_					0	0	0			REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	510.234384	1018.45422	0.21756	0.00011101	2.3207	0.0011841	2.5382	0.0012951	510.2351343850254	29.907	0.20675	29.606	29.495	29.702	-0.30095	-0.067965	0.0020123	NaN	21.747	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16211000	+		6739	13512	3743	3775							-0.054273358766863566
DTHMKYQP	8	Unmodified	_DTHMKYQP_					0	0	0			REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	510.234384	1018.45422	0.33777	0.00017234	0.013999	7.1427E-06	0.35177	0.00017948	510.2343570459138	29.978	0.31612	29.742	29.61	29.926	-0.23655	0.067965	-0.00034163	NaN	21.747	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4431200	+		6740	13512	3743	3775							-0.054273358766863566
DTHRWWGVSS	10	Unmodified	_DTHRWWGVSS_					0	0	0		tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	615.7850952148438	2	615.786161	1229.55777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.313	1	42.938	42.438	43.438	-0.37433								0	0	0	0.90892	1	15920	15920		13.906	1.6654	1				6741	18504	3744	3776	6573	6573					-0.04782712444671233
DTHSDKSNFPI	11	Unmodified	_DTHSDKSNFPI_					0	0	0			REV__ENST00000460072.5_1_2:39963877-39988481:-|nuORF	REV__ENST00000460072.5_1_2:39963877-39988481:-|nuORF	MSMS	HCT116MG_D190212_S3	3	630.7960815429688	2	630.796392	1259.57823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.043	1	48.727	48.227	49.227	-0.31596								0	0	0	0.95023	1	18460	18460		6.2058	0	1		+		6742	12207	3745	3777	6574	6574					-0.04117586575534915
DTIAKQLAQ	9	Unmodified	_DTIAKQLAQ_					0	0	0		nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2	nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2	nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2	MULTI-MSMS	HCT116MG_D190212_S3	3	494.2771301269531	2	494.277106	986.53966	0.33357	0.00016488	-0.45375	-0.00022428	-0.12018	-5.9403E-05	494.27691709940314	26.657	0.26009	26.508	26.411	26.671	-0.14924					6	4	2	0	0	0	0.28073	1	9594	9594		32.786	1.5173	1	3174900			6743	3837	3746	3778	6575	6575					0.04585152580625618
DTIAKQLAQ	9	Unmodified	_DTIAKQLAQ_					0	0	0		nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2;ENSG00000143882|ENST00000272238|ATP6V1C2	nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2	nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	494.277106	986.53966	0.26897	0.00013295	-0.40599	-0.00020067	-0.13702	-6.7726E-05	494.2768472262336	26.881	0.15614	26.529	26.45	26.606	-0.35254	0.010582	2.4803E-05	NaN	32.786	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12535000			6744	3837	3746	3778							0.04585152580625618
DTIKQMNKY	9	Unmodified	_DTIKQMNKY_					0	0	0		NOMO1|p.V423I|1|0.24|ENSG00000103512|chr16:14863059-14863059|G/A|missense_variant	NOMO1|p.V423I|1|0.24|ENSG00000103512|chr16:14863059-14863059|G/A|missense_variant	NOMO1|p.V423I|1|0.24|ENSG00000103512|chr16:14863059-14863059|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	570.788818359375	2	570.789524	1139.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.688	1	37.585	37.085	38.085	-0.10318								0	0	0	0.64498	1	14135	14135		21.747	5.8995	1				6745	9700	3747	3779	6576	6576					0.0002946439167317294
DTIYEDCDCSQ	11	Unmodified	_DTIYEDCDCSQ_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MSMS	HCT116MG_D190212_S1	1	646.3494262695312	2	646.226293	1290.43803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.125	1	20.125	19.625	20.625	0								0	0	0	0.95113	1	7017	7017		5.7319	1.7875	1				6746	6286	3748	3780	6577	6577					-0.19556874686418269
DTKHGALGSP	10	Unmodified	_DTKHGALGSP_					0	0	0		nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153789305-153796529:+|nuORF;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	MULTI-MSMS	HCT116MG_D190212_S2	2	491.7510986328125	2	491.751256	981.487959	0.21882	0.0001076	-0.08523	-4.1912E-05	0.13359	6.5692E-05	491.75103871492405	26.837	0.31327	26.485	26.241	26.554	-0.35254					8	5	2	0	0	0	0.68623	1	9753	9753		21.537	1.0834	1	17889000			6747	4702	3749	3781	6578	6578					-0.0035259111327832215
DTLEHYLDK	9	Unmodified	_DTLEHYLDK_					0	0	0		ENST00000491016.1_1_22:29706398-29706989:+|nuORF;nc|ENSG00000185340|Q99501-3|GAS2L1;nc|ENSG00000185340|Q99501-2|GAS2L1;GAS2L1|p.H345Pfs*12|1|0.48|ENSG00000185340|chr22:29311477-29311478|-/C|frameshift_variant;nc|ENSG00000185340|Q99501-4|GAS2L1;GAS2L1|p.P614Hfs*2|3|0.2|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant;nc|ENSG00000185340|Q99501|GAS2L1;ENSG00000185340|ENST00000616432|GAS2L1	ENST00000491016.1_1_22:29706398-29706989:+|nuORF	ENST00000491016.1_1_22:29706398-29706989:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	567.9852294921875	2	567.277303	1132.54005	0.75117	0.00042612	0.034254	1.9431E-05	0.78543	0.00044556	567.2772496830383	33.341	0.36064	33.148	32.966	33.327	-0.19297					15	6	3	0	0	0	0.55732	1	12295	12295		13.906	0	1	289270000			6748	5822	3750	3782	6579	6579					-0.020914724902240778
DTLEQLFY	8	Unmodified	_DTLEQLFY_					0	0	0			REV__ENST00000510223.5_1_4:89425745-89426856:+|nuORF	REV__ENST00000510223.5_1_4:89425745-89426856:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	514.7501831054688	2	514.75039	1027.48623	0.062932	3.2394E-05	0.033782	1.7389E-05	0.096714	4.9783E-05	514.7503597009913	53.181	0.26027	52.992	52.809	53.07	-0.18922					6	4	2	0	0	0	0.76189	1	20476	20476		15.847	0	1	12171000	+		6749	16172	3751	3783	6580	6580					-0.02641644921891384
DTLESPPKIIP	11	Unmodified	_DTLESPPKIIP_					0	0	0		USP1|p.N662Mfs*2|1|0.82|ENSG00000162607|chr1:62450601-62450601|A/-|frameshift_variant;ENSG00000162607|ENST00000339950|USP1	USP1|p.N662Mfs*2|1|0.82|ENSG00000162607|chr1:62450601-62450601|A/-|frameshift_variant	USP1|p.N662Mfs*2|1|0.82|ENSG00000162607|chr1:62450601-62450601|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	605.3378295898438	2	605.339904	1208.66525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.251	1	41.948	41.448	42.448	-0.30352								0	0	0	0.95196	1	15734	15734		5.2969	0	1				6750	4534	3752	3784	6581	6581					0.06926819646173499
DTLGLTGVLAA	11	Unmodified	_DTLGLTGVLAA_					0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	MULTI-MSMS	HCT116MG_D190212_S2	2	515.79248046875	2	515.792589	1029.57063	0.17327	8.9373E-05	-0.19737	-0.0001018	-0.024097	-1.2429E-05	515.7924395801965	38.441	0.31678	38.348	38.167	38.483	-0.09301					10	5	3	0	0	0	0.68267	1	14460	14460		26.268	1.2772	1	39854000	+		6751	17188	3753	3785	6582	6582					0.057023058948516336
DTLISQQSC	9	Unmodified	_DTLISQQSC_					0	0	0		nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;ENSG00000261934|ENST00000573521|PCDHGA9	nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	MULTI-MSMS	HCT116MG_D190212_S2	2	497.7290954589844	2	497.729132	993.44371	0.15846	7.8873E-05	0.28986	0.00014427	0.44832	0.00022314	497.7291937619631	37.718	0.46318	37.615	37.486	37.949	-0.10318					12	8	2	0	0	0	0.30509	1	14154	14154		30.225	8.4782	1	41651000			6752	6631	3754	3786	6583	6583					-0.05327363321782741
DTLISQQSC	9	Unmodified	_DTLISQQSC_					0	0	0		nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;ENSG00000261934|ENST00000573521|PCDHGA9	nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	MULTI-MSMS	HCT116MG_D190212_S3	3	497.72943115234375	2	497.729132	993.44371	0.4644	0.00023114	0.11583	5.7654E-05	0.58023	0.0002888	497.72915152320377	37.93	0.21339	37.629	37.568	37.781	-0.30137					12	7	2	0	0	0	0.39063	1	14044	14044		23.148	10.617	1	6532700			6753	6631	3754	3786	6584	6584					-0.05327363321782741
DTLLDIIRRF	10	Unmodified	_DTLLDIIRRF_					0	0	0		HKDC1|p.M40I|1|0.42|ENSG00000156510|chr10:69227263-69227263|G/T|missense_variant	HKDC1|p.M40I|1|0.42|ENSG00000156510|chr10:69227263-69227263|G/T|missense_variant	HKDC1|p.M40I|1|0.42|ENSG00000156510|chr10:69227263-69227263|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	631.3662109375	2	631.366787	1260.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.635	1	36.52	36.02	37.02	-0.11478								0	0	0	0.90475	1	13706	13706		14.838	0	1				6754	9224	3755	3787	6585	6585					0.09909036868543808
DTLLHFATESK	11	Unmodified	_DTLLHFATESK_					0	0	0		APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant	APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant	APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	631.3812866210938	2	631.324785	1260.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.387	1	46.075	45.575	46.575	-0.31237								0	0	0	0.9387	1	17391	17391		12.241	0.74595	1				6755	156	3756	3788	6586	6586					0.015124609810072798
DTLLHFATESK	11	Unmodified	_DTLLHFATESK_					0	0	0		APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant	APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant	APC|p.T1496Kfs*19|1|0.17|ENSG00000134982|chr5:112840075-112840076|-/AAGT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	631.3226928710938	2	631.324785	1260.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.555	1	46.183	45.683	46.683	-0.37134								0	0	0	0.94012	1	17191	17191		11.495	2.7493	1				6756	156	3756	3788	6587	6587					0.015124609810072798
DTLLSAFVIL	10	Unmodified	_DTLLSAFVIL_					0	0	0			REV__SYNGR4|p.S39A|1|0.27|ENSG00000105467|chr19:48373538-48373538|T/G|missense_variant	REV__SYNGR4|p.S39A|1|0.27|ENSG00000105467|chr19:48373538-48373538|T/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	1092.365478515625	1	1091.63469	1090.62741	0.70239	0.00076676	2.2661	0.0024737	2.9684	0.0032405	1092.6405495954664	35.366	0.15641	35.366	35.267	35.424	0					4	2	2	0	0	0	0.31019	1	13139	13139		6.7232	3.1267	1	6739600	+		6757	17608	3757	3789	6588	6588					0.08572353451381787
DTLNKRFNE	9	Unmodified	_DTLNKRFNE_					0	0	0			REV__nc|ENSG00000196116|Q8NHU6-3|TDRD7	REV__nc|ENSG00000196116|Q8NHU6-3|TDRD7	MSMS	HCT116MG_D190212_S2	2	568.7879638671875	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.418	1	47.296	46.796	47.796	-0.12175								0	0	0	0.71946	1	18088	18088		18.146	1.0335	1		+		6758	14001	3758	3790	6589	6589					-0.0001724802177704987
DTLPAPHSK	9	Unmodified	_DTLPAPHSK_					0	0	0		ENST00000486898.1_1_2:27539943-27545949:-|nuORF	ENST00000486898.1_1_2:27539943-27545949:-|nuORF	ENST00000486898.1_1_2:27539943-27545949:-|nuORF	MSMS	HCT116MG_D190212_S4	4	483.72991943359375	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.464	1	34.078	33.578	34.578	-0.38558								0	0	0	0.69648	1	12585	12585		19.257	2.3147	1				6759	8297	3759	3791	6590	6590					0.01412596892100737
DTLPPPPAGP	10	Unmodified	_DTLPPPPAGP_					0	0	0		ENST00000323534.4_2_3:152880144-152880483:+|nuORF	ENST00000323534.4_2_3:152880144-152880483:+|nuORF	ENST00000323534.4_2_3:152880144-152880483:+|nuORF	MSMS	HCT116MG_D190212_S2	2	481.2513122558594	2	481.2531	960.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.307	1	19.927	19.427	20.427	-0.37949								0	0	0	0.91906	1	7091	7091		11.64	1.5664	1				6760	7119	3760	3792	6591	6591					0.00982078660570096
DTLRGFVLA	9	Unmodified	_DTLRGFVLA_					0	0	0		FZD2|p.P411T|1|0.23|ENSG00000180340|chr17:44558919-44558919|C/A|missense_variant	FZD2|p.P411T|1|0.23|ENSG00000180340|chr17:44558919-44558919|C/A|missense_variant	FZD2|p.P411T|1|0.23|ENSG00000180340|chr17:44558919-44558919|C/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	496.26470947265625	2	496.282192	990.549831	0.32079	0.0001592	-0.4106	-0.00020377	-0.089805	-4.4569E-05	496.2818958400085	35.291	0.20646	35.148	34.984	35.19	-0.14245					5	3	2	0	0	0	0.21112	1	13130	13130		31.268	8.5321	1	13466000			6761	9173	3761	3793	6592	6592					0.05417760305851971
DTLRVMFLV	9	Unmodified	_DTLRVMFLV_					0	0	0			REV__ENST00000261247.13_1_14:59970910-59971024:+|nuORF	REV__ENST00000261247.13_1_14:59970910-59971024:+|nuORF	MSMS	HCT116MG_D190212_S4	4	547.3075561523438	2	547.307352	1092.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.139	1	30.769	30.269	31.269	-0.37026								0	0	0	0.7689	1	11289	11289		4.756	0.42677	1		+		6762	14624	3762	3794	6593	6593					0.05755546639329623
DTLVAVTISEG	11	Unmodified	_DTLVAVTISEG_					0	0	0		ENSG00000137509|ENST00000313010|PRCP;nc|ENSG00000137509|P42785-2|PRCP	ENSG00000137509|ENST00000313010|PRCP	ENSG00000137509|ENST00000313010|PRCP	MSMS	HCT116MG_D190212_S4	4	368.8647766113281	3	368.864283	1103.57102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.465	1	29.115	28.615	29.615	-0.34921								0	0	0	0.9387	1	10641	10641		6.6235	0	1				6763	3485	3763	3795	6594	6594					0.02337680824052768
DTNENVDIY	9	Unmodified	_DTNENVDIY_					0	0	0		tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1	tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1	tr|U7SM72|U7SM72_FUSNUMercuricreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02103PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7357177734375	2	541.735468	1081.45638	0.40093	0.0002172	-1.2661	-0.0006859	-0.86518	-0.0004687	541.7350149188773	22.003	0.52086	21.618	21.323	21.844	-0.38503					11	9	2	0	0	0	0.33687	1	7824	7824		26.884	5.137	1	8740700			6764	18348	3764	3796	6595	6595					-0.08108628657873851
DTNLESNDQTI	11	Unmodified	_DTNLESNDQTI_					0	0	0			REV__TAPT1|p.K545Nfs*10|1|0.09|ENSG00000169762|chr4:16163377-16163377|T/-|frameshift_variant	REV__TAPT1|p.K545Nfs*10|1|0.09|ENSG00000169762|chr4:16163377-16163377|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	625.07275390625	2	625.280771	1248.54699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.315	1	30.315	29.815	30.815	0								0	0	0	0.88801	1	11114	11114		21.537	0	1		+		6765	17615	3765	3797	6596	6596					-0.06734204400277122
DTPAAPSHPG	10	Unmodified	_DTPAAPSHPG_					0	0	0			REV__ENST00000301067.11_1_12:49415144-49415345:-|nuORF	REV__ENST00000301067.11_1_12:49415144-49415345:-|nuORF	MSMS	HCT116MG_D190212_S4	4	475.2210388183594	2	475.222331	948.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.215	1	19.028	18.528	19.528	-0.18674								0	0	0	0.90475	1	6502	6502		14.838	0.93222	1		+		6766	14788	3766	3798	6597	6597					-0.046168530387149076
DTPFHQIS	8	Unmodified	_DTPFHQIS_					0	0	0		ENST00000449599.3_1_3:27758726-27758771:-|nuORF	ENST00000449599.3_1_3:27758726-27758771:-|nuORF	ENST00000449599.3_1_3:27758726-27758771:-|nuORF	MSMS	HCT116MG_D190212_S2	2	472.7272644042969	2	472.727249	943.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.031	1	30.764	30.264	31.264	-0.26704								0	0	0	0.76512	1	11431	11431		25.399	0.40835	1				6767	7976	3767	3799	6598	6598					-0.03403665033329162
DTPNLRLY	8	Unmodified	_DTPNLRLY_					0	0	0			REV__ENST00000261569.11_1_5:66300453-66300594:+|nuORF	REV__ENST00000261569.11_1_5:66300453-66300594:+|nuORF	MSMS	HCT116MG_D190212_S2	2	496.26470947265625	2	496.263999	990.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.221	1	35.079	34.579	35.579	-0.14245								0	0	0	0.62663	1	13130	13130		36.044	1.8569	1		+		6768	14628	3768	3800	6599	6599					0.017808834091283643
DTPQQGLSDP	10	Unmodified	_DTPQQGLSDP_					0	0	0			REV__HTATSF1|p.T358Pfs*9|1|0.2|ENSG00000102241|chrX:136510815-136510815|A/-|frameshift_variant	REV__HTATSF1|p.T358Pfs*9|1|0.2|ENSG00000102241|chrX:136510815-136510815|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	529.2440185546875	2	529.24346	1056.47237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.552	1	27.364	26.864	27.864	-0.18847								0	0	0	0.83705	1	9934	9934		24.021	3.5669	1		+		6769	11146	3769	3801	6600	6600					-0.05360922420982206
DTQPLHQLCYF	11	Unmodified	_DTQPLHQLCYF_					0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1;REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	HCT116MG_D190212_S4	4	682.8196411132812	2	682.818812	1363.62307	0.18878	0.0001289	0.34668	0.00023672	0.53547	0.00036563	682.8191022897677	16.84	0.96791	16.673	16.261	17.229	-0.16664					28	18	2	0	0	0	0.74191	1	5467	5467		4.897	1.3005	1	1948200	+		6770	12100;15746	3770	3802	6601	6601					-0.044194790338224266
DTQPLHQLCYF	11	Unmodified	_DTQPLHQLCYF_					0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1;REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	682.818812	1363.62307	0.8316	0.00056783	-0.15513	-0.00010593	0.67647	0.0004619	682.8184637300618	16.449	0.93643	16.534	16.237	17.174	0.085423	-0.069559	-0.00039786	NaN	4.897	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1936800	+		6771	12100;15746	3770	3802							-0.044194790338224266
DTQTRQQP	8	Unmodified	_DTQTRQQP_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MSMS	HCT116MG_D190212_S3	3	487.2386474609375	2	487.238513	972.462472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.164	1	31.885	31.385	32.385	-0.27841								0	0	0	0.8837	1	11778	11778		14.582	0	1				6772	9601	3771	3803	6602	6602					-0.024860656357191147
DTRKPSWIFP	10	Unmodified	_DTRKPSWIFP_					0	0	0		ENST00000361786.6_1_14:77580830-77581103:+|nuORF	ENST00000361786.6_1_14:77580830-77581103:+|nuORF	ENST00000361786.6_1_14:77580830-77581103:+|nuORF	MSMS	HCT116MG_D190212_S3	3	623.8300170898438	2	623.83258	1245.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.683	1	46.369	45.869	46.869	-0.31405								0	0	0	0.91279	1	17510	17510		13.042	3.4985	1				6773	7364	3772	3804	6603	6603					0.03760792288699122
DTRNIRLVQF	10	Unmodified	_DTRNIRLVQF_					0	0	0		nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN;RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant;RELN|p.H3353Tfs*46|1|0.25|ENSG00000189056|chr7:103483777-103483777|G/-|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-2|RELN	nc|ENSG00000189056|P78509-2|RELN	MSMS	HCT116MG_D190212_S4	4	631.35400390625	2	631.354211	1260.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.432	1	49.07	48.57	49.57	-0.36213								0	0	0	0.95507	1	18335	18335		3.5965	0.60125	1				6774	6015	3773	3805	6604	6604					0.0739498206596636
DTRRRNPR	8	Unmodified	_DTRRRNPR_					0	0	0			REV__ENST00000300954.9_1_19:1483001-1487678:-|nuORF	REV__ENST00000300954.9_1_19:1483001-1487678:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	357.53607177734375	3	357.535717	1069.58532	0.059227	2.1176E-05	0.97583	0.0003489	1.0351	0.00037007	357.5362673120496	27.404	0.46486	27.062	26.933	27.398	-0.34201					15	8	2	0	0	0	0.8506	1	9993	9993		3.5965	0	1	9594200	+		6775	14785	3774	3806	6605	6605					0.05331235606217888
DTRYKPAQ	8	Unmodified	_DTRYKPAQ_					0	0	0			REV__ENSG00000163380|ENST00000420581|LMOD3	REV__ENSG00000163380|ENST00000420581|LMOD3	MULTI-MSMS	HCT116MG_D190212_S2	2	491.7322082519531	2	489.753798	977.493044	0.069294	3.3937E-05	0.46332	0.00022691	0.53261	0.00026085	489.7539264546712	18.191	1.4604	17.834	17.388	18.849	-0.35647					53	27	4	0	0	0	0.74206	1	6192	6192		18.135	2.2878	1	60524000	+		6776	12918	3775	3807	6606	6606					0.0033971274932582674
DTSAMDTLP	9	Unmodified	_DTSAMDTLP_					0	0	0		ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant	ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	475.70904541015625	2	475.710408	949.406262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.66	1	22.275	21.775	22.775	-0.3852								0	0	0	0.76818	1	8039	8039		7.2892	0	1				6777	61	3776	3808	6607	6607					-0.07046454587396056
DTSETAFQN	9	Unmodified	_DTSETAFQN_					0	0	0		ENSG00000101052|ENST00000373030|IFT52;ENST00000471199.1_1_20:42271018-42275620:+|nuORF	ENSG00000101052|ENST00000373030|IFT52	ENSG00000101052|ENST00000373030|IFT52	MULTI-MSMS	HCT116MG_D190212_S2	2	1013.4097900390625	1	1012.4218	1011.41452	0.61726	0.00062492	0.048938	4.9546E-05	0.66619	0.00067447	1012.4216926909247	22.981	0.46831	22.596	22.414	22.882	-0.3852					16	8	3	0	0	0	0.39063	1	8103	8103		23.148	6.2061	1	59812000			6778	1750	3777	3809	6608	6608					-0.0907318434641411
DTSGHQIPSGP	11	Unmodified	_DTSGHQIPSGP_					0	0	0			REV__ENST00000286181.7_1_2:201845995-201881890:-|nuORF	REV__ENST00000286181.7_1_2:201845995-201881890:-|nuORF	MSMS	HCT116MG_D190212_S3	3	548.2224731445312	2	548.256902	1094.49925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.575	1	16.661	16.161	17.161	0.085424								0	0	0	0.93552	1	5510	5510		13.906	0	1		+		6779	12707	3778	3810	6609	6609					-0.04421813809813102
DTSGNELSGA	10	Unmodified	_DTSGNELSGA_					0	0	0			REV__ENST00000412485.1_1_X:13285044-13285287:-|nuORF	REV__ENST00000412485.1_1_X:13285044-13285287:-|nuORF	MSMS	HCT116MG_D190212_S3	3	475.7057189941406	2	475.706711	949.398869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.644	1	44.337	43.837	44.837	-0.30759								0	0	0	0.94107	1	16695	16695		6.7232	1.4925	1		+		6780	15450	3779	3811	6610	6610					-0.07785470863461796
DTSGSPTM	8	Unmodified	_DTSGSPTM_					0	0	0			REV__ENST00000506297.5_1_4:143268693-143324116:-|nuORF	REV__ENST00000506297.5_1_4:143268693-143324116:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	795.3201904296875	1	795.31891	794.311634	0.79855	0.0006351	0.83186	0.0006616	1.6304	0.0012967	795.3195171240815	42.682	0.26028	42.379	42.249	42.509	-0.30352					7	4	2	0	0	0	0.6854	1	15918	15918		24.674	5.2349	1	4187600	+		6781	16147	3780	3812	6611	6611					-0.09374968338738654
DTSGVQCYGP	10	Unmodified	_DTSGVQCYGP_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	513.7296142578125	2	513.713482	1025.41241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.33	1	29.108	28.608	29.608	-0.22195								0	0	0	0.90892	1	10651	10651		13.906	4.5586	1				6782	6105	3781	3813	6612	6612					-0.0992793635587077
DTTLPDTV	8	Unmodified	_DTTLPDTV_					0	0	0			REV__ZFX|p.G514Efs*21|1|0.32|ENSG00000005889|chrX:24210493-24210493|A/-|frameshift_variant	REV__ZFX|p.G514Efs*21|1|0.32|ENSG00000005889|chrX:24210493-24210493|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	431.2137145996094	2	431.21364	860.412728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.791	1	25.663	25.163	26.163	-0.12795								0	0	0	0.70483	1	9224	9224		30.225	5.5509	1		+		6783	10481	3782	3814	6613	6613					-0.0230619336438167
DTTLVKRPV	9	Unmodified	_DTTLVKRPV_					0	0	0		ENST00000560504.1_1_15:65115949-65116540:-|nuORF;nc|ENSG00000140451|Q9H611-2|PIF1;ENST00000560444.1_1_15:65114569-65116540:-|nuORF;PIF1|p.T248Kfs*34|1|0.52|ENSG00000140451|chr15:64822340-64822340|G/-|frameshift_variant;PIF1|p.A479Pfs*3|1|0.3|ENSG00000140451|chr15:64819122-64819122|C/-|frameshift_variant;nc|ENSG00000140451|Q9H611-4|PIF1;ENSG00000140451|ENST00000559239|PIF1;nc|ENSG00000140451|Q9H611-3|PIF1	ENST00000560504.1_1_15:65115949-65116540:-|nuORF	ENST00000560504.1_1_15:65115949-65116540:-|nuORF	MSMS	HCT116MG_D190212_S2	2	514.8087768554688	2	514.808574	1027.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.485	1	31.236	30.736	31.736	-0.24883								0	0	0	0.76669	1	11616	11616		12.532	1.0368	1				6784	3664	3783	3815	6614	6614					0.0898971836866167
DTTNGYSSE	9	Unmodified	_DTTNGYSSE_					0	0	0			REV__nc|ENSG00000134365|Q92496-2|CFHR4	REV__nc|ENSG00000134365|Q92496-2|CFHR4	MULTI-MSMS	HCT116MG_D190212_S4	4	487.1911926269531	2	487.190894	972.367234	-0.069317	-3.3771E-05	1.0501	0.00051161	0.9808	0.00047784	487.19132696314466	25.832	0.26023	25.542	25.412	25.672	-0.29022					7	4	2	0	0	0	0.34272	1	9203	9203		26.268	0.86883	1	3234400	+		6785	12052	3784	3816	6615	6615					-0.1200546361741317
DTTTTFCGTP	10	Unmodified	_DTTTTFCGTP_					0	0	0		nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	MSMS	HCT116MG_D190212_S4	4	522.2189331054688	2	522.221139	1042.42773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.846	1	22.608	22.108	23.108	-0.23758								0	0	0	0.92272	1	7969	7969		10.824	0.75	1				6786	1921	3785	3817	6616	6616					-0.09179069558672381
DTVATVTV	8	Unmodified	_DTVATVTV_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-4|SYT14	REV__nc|ENSG00000143469|Q8NB59-4|SYT14	MULTI-MSMS	HCT116MG_D190212_S3	3	805.4307861328125	1	805.430175	804.422899	0.93021	0.00074922	-0.20483	-0.00016498	0.72538	0.00058424	805.4298496814259	42.734	0.31233	42.431	42.249	42.561	-0.30352					8	5	2	0	0	0	0.10511	1	15934	15934		93.883	7.7621	1	7975300	+		6787	12394	3786	3818	6617	6617					0.012864143608680934
DTVEVTAI	8	Unmodified	_DTVEVTAI_					0	0	0		tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	847.441650390625	1	847.44074	846.433463	0.89889	0.00076175	-0.033106	-2.8055E-05	0.86578	0.0007337	847.4407004964183	43.527	0.51515	43.454	43.252	43.767	-0.073376					22	9	3	0	0	0	0.10511	1	16499	16499		93.883	7.7621	1	76175000			6788	18402	3787	3819	6618	6618					0.0041039701528688965
DTVEVTAI	8	Unmodified	_DTVEVTAI_					0	0	0		tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	847.4415283203125	1	847.44074	846.433463	0.78743	0.0006673	0.075111	6.3652E-05	0.86254	0.00073095	847.4406498103992	43.728	0.62564	43.422	43.188	43.813	-0.30616					22	11	3	0	0	0	0.10511	1	16328	16328		93.883	7.7621	1	40370000			6789	18402	3787	3819	6619	6619					0.0041039701528688965
DTVEVTAI	8	Unmodified	_DTVEVTAI_					0	0	0		tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	847.4415283203125	1	847.44074	846.433463	0.64086	0.00054309	0.14998	0.0001271	0.79084	0.00067019	847.4408210078445	43.862	0.46268	43.488	43.315	43.778	-0.37433					14	8	3	0	0	0	0.10511	1	16124	16124		93.883	7.7621	1	13849000			6790	18402	3787	3819	6620	6620					0.0041039701528688965
DTVEVTAI	8	Unmodified	_DTVEVTAI_					0	0	0		tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	tr|U7SRI0|U7SRI0_FUSNUD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01609PE=4SV=1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	847.44074	846.433463	0.6993	0.00059262	-0.17285	-0.00014648	0.52646	0.00044614	847.4405326035834	43.464	0.20754	43.464	43.316	43.524	0	0.0071057	-0.00021324	NaN	93.883	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14728000			6791	18402	3787	3819							0.0041039701528688965
DTVLQGNFY	9	Unmodified	_DTVLQGNFY_					0	0	0		tr|U7SZJ6|U7SZJ6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00896PE=4SV=1	tr|U7SZJ6|U7SZJ6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00896PE=4SV=1	tr|U7SZJ6|U7SZJ6_FUSNUBacterialvirulenceproteinVirB8domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00896PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	528.7527465820312	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.669	1	41.601	41.101	42.101	-0.068199								0	0	0	0.67173	1	15752	15752		20.454	2.3186	1				6792	18533	3788	3820	6621	6621					-0.03315126690381476
DTVMPMLKDYY	11	2 Oxidation (M)	_DTVM(Oxidation (M))PM(Oxidation (M))LKDYY_		DTVM(1)PM(1)LKDYY		DTVM(46)PM(46)LKDYY	0	0	2			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	HCT116MG_D190212_S2	2	704.8141479492188	2	704.312171	1406.60979	0.92654	0.00065257	0.1542	0.0001086	1.0807	0.00076118	704.3123766957922	41.903	0.31165	41.834	41.653	41.964	-0.068199					11	5	3	0	0	0	0.50491	1	15852	15852		45.7	9.1934	1	46204000	+		6793	13501	3789	3821	6622	6622		158;159			-0.07725097928050673
DTVMPMLKDYY	11	2 Oxidation (M)	_DTVM(Oxidation (M))PM(Oxidation (M))LKDYY_					0	0	2			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MATCH	HCT116MG_D190212_S1	1		2	704.312171	1406.60979	0.86371	0.00060832	-0.0069929	-4.9252E-06	0.85671	0.00060339	704.3115000696945	41.94	0.20892	41.94	41.81	42.019	0	0.060471	-0.0003064	NaN	45.7	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5390700	+		6794	13501	3789	3821				158;159			-0.07725097928050673
DTVMPMLKDYY	11	2 Oxidation (M)	_DTVM(Oxidation (M))PM(Oxidation (M))LKDYY_					0	0	2			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	704.312171	1406.60979	0.92654	0.00065257	0.1542	0.0001086	1.0807	0.00076118	704.3123766957922	41.903	0.31165	41.834	41.653	41.964	-0.068199	-0.045278	-7.9342E-05	NaN	45.7	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46204000	+		6795	13501	3789	3821				158;159			-0.07725097928050673
DTVMPMLKDYY	11	2 Oxidation (M)	_DTVM(Oxidation (M))PM(Oxidation (M))LKDYY_					0	0	2			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MATCH	HCT116MG_D190212_S4	4		2	704.312171	1406.60979	0.75902	0.00053459	0.38622	0.00027202	1.1452	0.00080661	704.3124353058548	42.24	0.15545	41.865	41.787	41.942	-0.37565	-0.015193	0.00024749	NaN	45.7	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2094500	+		6796	13501	3789	3821				158;159			-0.07725097928050673
DTVQITTLDTY	11	Unmodified	_DTVQITTLDTY_					0	0	0			REV__ENSG00000172061|ENST00000347624|LRRC15	REV__ENSG00000172061|ENST00000347624|LRRC15	MULTI-MSMS	HCT116MG_D190212_S2	2	635.314208984375	2	635.314083	1268.61361	0.60327	0.00038327	-0.5447	-0.00034606	0.058569	3.721E-05	635.8146825155941	31.296	0.25738	31.039	30.83	31.087	-0.25677					7	4	2	0	0	0	0.72139	1	11539	11539		13.906	2.2658	1	9293100	+		6797	13372	3790	3822	6623	6623					-0.009949688383812827
DTVSNWCPP	9	Unmodified	_DTVSNWCPP_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MSMS	HCT116MG_D190212_S2	2	509.7194519042969	2	509.718567	1017.42258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.996	1	20.613	20.113	21.113	-0.38288								0	0	0	0.46109	1	7366	7366		30.637	5.2372	1		+		6798	12761	3791	3823	6624	6624					-0.08543328630639735
DTWDRHSRVYW	11	Unmodified	_DTWDRHSRVYW_					0	0	0			REV__VSTM2L|p.A94Pfs*5|1|0.52|ENSG00000132821|chr20:37931791-37931791|G/-|frameshift_variant	REV__VSTM2L|p.A94Pfs*5|1|0.52|ENSG00000132821|chr20:37931791-37931791|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	507.5732116699219	3	507.572496	1519.69566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.225	1	51.88	51.38	52.38	-0.34538								0	0	0	0.96121	1	19462	19462		0.45452	0	1		+		6799	12004	3792	3824	6625	6625					-0.043400089160513744
DTWPGVTQLP	10	Unmodified	_DTWPGVTQLP_					0	0	0		ENSG00000250506|ENST00000448471|CDK3	ENSG00000250506|ENST00000448471|CDK3	ENSG00000250506|ENST00000448471|CDK3	MSMS	HCT116MG_D190212_S4	4	557.2809448242188	2	557.282389	1112.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.555	1	38.173	37.673	38.673	-0.38163								0	0	0	0.92607	1	14134	14134		10.074	1.9184	1				6800	6580	3793	3825	6626	6626					-0.001548647649542545
DTWRALVEE	9	Unmodified	_DTWRALVEE_					0	0	0			REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;REV__PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant;REV__PHF20L1|p.N322Mfs*42|5|0.3|ENSG00000129292|chr8:132814664-132814664|A/-|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	559.7777709960938	2	559.77747	1117.54039	0.50146	0.00028071	0.40815	0.00022847	0.90961	0.00050918	559.7778901407448	26.519	0.31228	26.37	26.203	26.515	-0.14924					7	5	2	0	0	0	0.43775	1	9556	9556		20.454	1.1966	1	2100900	+		6801	11889;17412;17413	3794	3826	6627	6627					-0.013680527703172629
DTWSCLSSYN	10	Unmodified	_DTWSCLSSYN_					0	0	0			REV__ENST00000488014.5_1_1:84386258-84403687:-|nuORF	REV__ENST00000488014.5_1_1:84386258-84403687:-|nuORF	MSMS	HCT116MG_D190212_S4	4	588.2392578125	2	588.237321	1174.46009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.486	1	19.3	18.8	19.8	-0.18674								0	0	0	0.92272	1	6612	6612		10.824	0.75	1		+		6802	16011	3795	3827	6628	6628					-0.12016282155673252
DTYTKKQVLR	10	Unmodified	_DTYTKKQVLR_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MSMS	HCT116MG_D190212_S3	3	626.355224609375	2	626.356419	1250.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.159	1	57.889	57.389	58.389	-0.26932								0	0	0	0.94339	1	22118	22118		6.2058	0	1				6803	3908	3796	3828	6629	6629					0.08296446488884612
DTYYAWYRYI	10	Unmodified	_DTYYAWYRYI_					0	0	0			REV__tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	REV__tr|U7STE4|U7STE4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01028PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	707.3284301757812	2	707.327328	1412.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.093	1	15.929	15.429	16.429	-0.16364								0	0	0	0.96911	1	5241	5241		0.45834	0.10771	1		+		6804	17794	3797	3829	6630	6630					-0.049712351564039636
DVAAPHRQP	9	Unmodified	_DVAAPHRQP_					0	0	0		ENSG00000136244|ENST00000258743|IL6	ENSG00000136244|ENST00000258743|IL6	ENSG00000136244|ENST00000258743|IL6	MULTI-SECPEP	HCT116MG_D190212_S4	4	495.75396728515625	2	495.759415	989.504277	0.34034	0.00016872	-1.2792	-0.00063416	-0.93883	-0.00046544	495.7589353594639	29.772	0.25998	29.423	29.241	29.501	-0.34921					6	4	2	0	0	0	0.22781	1	10710	10710		23.148	7.3012	1	2124200			6805	3404	3798	3830	6631	6631					0.00910534843478672
DVAEDAALSP	10	Unmodified	_DVAEDAALSP_					0	0	0			REV__ENST00000538582.5_1_12:21615768-21620437:+|nuORF	REV__ENST00000538582.5_1_12:21615768-21620437:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	494.2348327636719	2	494.235104	986.455655	0.25245	0.00012477	-0.11077	-5.4744E-05	0.14169	7.0027E-05	494.2349294940713	29.446	0.7275	29.097	28.721	29.449	-0.34921					17	13	2	0	0	0	0.43205	1	10670	10670		39.957	1.9833	1	3223500	+		6806	16356	3799	3831	6632	6632					-0.03811423306956385
DVAFDEETSPG	11	Unmodified	_DVAFDEETSPG_					0	0	0			REV__SNAPC2|p.Q267Sfs*38|1|0.64|ENSG00000104976|chr19:7922553-7922553|C/-|frameshift_variant	REV__SNAPC2|p.Q267Sfs*38|1|0.64|ENSG00000104976|chr19:7922553-7922553|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	583.744140625	2	583.746033	1165.47751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.672	1	36.287	35.787	36.787	-0.38486								0	0	0	0.94416	1	13429	13429		9.3831	0.63772	1		+		6807	17535	3800	3832	6633	6633					-0.09860663349058996
DVAGPDRYQTN	11	Unmodified	_DVAGPDRYQTN_					0	0	0			REV__nc|ENSG00000125457|A9UHW6-2|MIF4GD	REV__nc|ENSG00000125457|A9UHW6-2|MIF4GD	MULTI-MSMS	HCT116MG_D190212_S3	3	618.2855834960938	2	618.286191	1234.55783	0.26144	0.00016164	-0.51983	-0.0003214	-0.25839	-0.00015976	618.2860884485412	18.042	0.67668	18.119	17.737	18.413	0.076334					22	12	3	0	0	0	0.70377	1	6054	6054		20.415	20.415	1	8444900	+		6808	17117	3801	3833	6634	6634					-0.050067572353327705
DVAHDKTEPP	10	Unmodified	_DVAHDKTEPP_					0	0	0			REV__nc|ENSG00000244731|P0C0L4-2|C4A	REV__nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	HCT116MG_D190212_S3	3	554.2750854492188	2	554.767103	1107.51965	0.3417	0.00018957	-0.46216	-0.00025639	-0.12046	-6.6826E-05	554.7669322511289	16.088	0.25995	16.174	16.029	16.289	0.085424					6	4	2	0	0	0	0.30812	1	5319	5319		7.2892	0	1	610450	+		6809	14303	3802	3834	6635	6635					-0.029806431499764585
DVARLPRRP	9	Unmodified	_DVARLPRRP_					0	0	0			REV__ENST00000233813.4_1_2:217539186-217539381:-|nuORF	REV__ENST00000233813.4_1_2:217539186-217539381:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	540.3251342773438	2	540.325257	1078.63596	0.6002	0.0003243	-0.18487	-9.989E-05	0.41533	0.00022441	540.3249269819438	26.267	0.20868	26.267	26.136	26.345	0					5	3	2	0	0	0	0.61789	1	9507	9507		14.838	5.4551	1	7565900	+		6810	14552	3803	3835	6636	6636					0.0997876493122476
DVAVLDELEQE	11	Unmodified	_DVAVLDELEQE_					0	0	0			REV__ENSG00000110013|ENST00000263593|SIAE	REV__ENSG00000110013|ENST00000263593|SIAE	MSMS	HCT116MG_D190212_S3	3	630.2906494140625	2	630.303715	1258.59288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.702	1	53.402	52.902	53.902	-0.29946								0	0	0	0.92235	1	20331	20331		17.113	4.0704	1		+		6811	11388	3804	3836	6637	6637					-0.026075592180632157
DVAWVNRNHGQ	11	Unmodified	_DVAWVNRNHGQ_					0	0	0			REV__RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	REV__RELN|p.C2194Lfs*11|1|0.06|ENSG00000189056|chr7:103542822-103542823|-/TCGTAATGTATAATAG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	648.3151245117188	2	648.315617	1294.61668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.163	1	26.852	26.352	27.352	-0.3114								0	0	0	0.88801	1	9711	9711		21.537	0	1		+		6812	13988	3805	3837	6638	6638					-0.018842361503629945
DVCELLEEHT	10	Unmodified	_DVCELLEEHT_					0	0	0		nc|ENSG00000283632|Q2M3D2|EXOC3L2;ENSG00000283632|ENST00000413988|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	MULTI-MSMS	HCT116MG_D190212_S4	4	594.26611328125	2	594.266078	1186.5176	0.89466	0.00053166	-0.55361	-0.00032899	0.34105	0.00020268	594.2656650119918	28.057	0.25985	27.726	27.596	27.856	-0.33138					8	4	2	0	0	0	0.71349	1	10096	10096		19.257	7.0163	1	3838000			6813	6703	3806	3838	6639	6639					-0.06819439950118067
DVDEESGDHS	10	Unmodified	_DVDEESGDHS_					0	0	0			REV__ZNF521|p.G1058Afs*24|1|0.28|ENSG00000198795|chr18:25224745-25224745|C/-|frameshift_variant	REV__ZNF521|p.G1058Afs*24|1|0.28|ENSG00000198795|chr18:25224745-25224745|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.2023315429688	2	545.20199	1088.38943	0.3651	0.00019906	0.62143	0.0003388	0.98653	0.00053786	545.202177967075	21.786	0.20807	21.401	21.271	21.479	-0.38503					8	3	3	0	0	0	0.4604	1	7697	7697		37.974	16.227	1	10431000	+		6814	14152	3807	3839	6640	6640					-0.15123283939669818
DVDEESGDHS	10	Unmodified	_DVDEESGDHS_					0	0	0			REV__ZNF521|p.G1058Afs*24|1|0.28|ENSG00000198795|chr18:25224745-25224745|C/-|frameshift_variant	REV__ZNF521|p.G1058Afs*24|1|0.28|ENSG00000198795|chr18:25224745-25224745|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	545.202880859375	2	545.20199	1088.38943	0.5316	0.00028983	0.56096	0.00030584	1.0926	0.00059567	545.2024328664173	21.555	0.31125	21.336	21.218	21.529	-0.21832					12	5	3	0	0	0	0.48679	1	7458	7458		36.127	9.8589	1	4818300	+		6815	14152	3807	3839	6641	6641					-0.15123283939669818
DVDIRKDLY	9	Unmodified	_DVDIRKDLY_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S1	1	569.3013916015625	2	568.800946	1135.58734	-0.061634	-3.5057E-05	-0.11249	-6.3983E-05	-0.17412	-9.904E-05	568.8008783902808	37.942	0.20803	37.942	37.811	38.019	0					9	3	3	0	0	0	0.0059958	1	14205	14205		128.93	39.979	1	27956000			6816	1322	3808	3840	6642	6642					0.024968067808231353
DVDIRKDLY	9	Unmodified	_DVDIRKDLY_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S2	2	568.8009033203125	2	568.800946	1135.58734	0.17708	0.00010072	0.26295	0.00014956	0.44003	0.00025029	568.801003798988	37.975	0.41225	37.882	37.599	38.011	-0.09301					15	7	3	0	0	0	0.0035136	1	14253	14253		168.54	57.25	1	114790000			6817	1322	3808	3840	6643	6643					0.024968067808231353
DVDIRKDLY	9	Unmodified	_DVDIRKDLY_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S3	3	568.801513671875	2	568.800946	1135.58734	0.48519	0.00027598	0.34683	0.00019728	0.83202	0.00047325	568.8011389167369	38.161	0.38023	37.859	37.66	38.04	-0.30137					10	7	2	0	0	0	0.0064416	1	14149	14149		125.04	46.31	1	12291000			6818	1322	3808	3840	6644	6644					0.024968067808231353
DVDKYFVDP	9	Unmodified	_DVDKYFVDP_					0	0	0			REV__ENSG00000182446|ENST00000331134|NPLOC4	REV__ENSG00000182446|ENST00000331134|NPLOC4	MULTI-SECPEP	HCT116MG_D190212_S2	2	548.75732421875	2	549.261122	1096.50769	0.51883	0.00028497	-1.0653	-0.00058512	-0.54645	-0.00030014	549.2591313594581	33.795	0.20839	33.602	33.482	33.691	-0.19297					5	3	2	0	0	0	0.19551	1	12564	12564		20.454	7.4112	1	8609100	+		6819	13717	3809	3841	6645	6645					-0.03670259893192451
DVDRVKRI	8	Unmodified	_DVDRVKRI_					0	0	0		ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2;nc|ENSG00000140563|Q6DN12-4|MCTP2;nc|ENSG00000140563|Q6DN12-3|MCTP2	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	1000.4618530273438	1	1000.5898	999.582528	0.52506	0.00052537	0.35185	0.00035206	0.87691	0.00087742	1000.5900181313208	50.999	0.77765	50.821	50.291	51.069	-0.17868					26	14	2	0	0	0	0.33109	1	19491	19491		0.6015	0.6015	1	32185000			6820	3676	3810	3842	6646	6646					0.08271967428709104
DVDVNLPKAD	10	Unmodified	_DVDVNLPKAD_					0	0	0		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	543.2782592773438	2	543.277303	1084.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.139	1	26.139	25.639	26.639	0								0	0	0	0.90892	1	9432	9432		13.906	0.86358	1				6821	82	3811	3843	6647	6647					0.001165275098173879
DVGANGQLQYR	11	Unmodified	_DVGANGQLQYR_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	HCT116MG_D190212_S3	3	611.6478271484375	2	610.804551	1219.59455	0.42005	0.00025657	-0.20823	-0.00012719	0.21182	0.00012938	610.8044584102985	22.406	0.72916	22.397	21.928	22.657	-0.0091438					26	13	3	0	0	0	0.7259	1	7717	7717		12.241	2.0901	1	4103100			6822	4842	3812	3844	6648	6648					-0.006464606187591926
DVHELRSDLP	10	Unmodified	_DVHELRSDLP_					0	0	0			REV__DENND2A|p.R732H|1|0.46|ENSG00000146966|chr7:140544750-140544750|C/T|missense_variant	REV__DENND2A|p.R732H|1|0.46|ENSG00000146966|chr7:140544750-140544750|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	590.803955078125	2	590.801477	1179.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.116	1	28.116	27.616	28.616	0								0	0	0	0.90023	1	10230	10230		15.847	3.3156	1		+		6823	10353	3813	3845	6649	6649					0.005790211497014752
DVILSRLPSIV	11	Unmodified	_DVILSRLPSIV_					0	0	0			REV__BLM|p.G1220Pfs*25|1|0.09|ENSG00000197299|chr15:90804264-90804265|-/ACCTTTA|frameshift_variant	REV__BLM|p.G1220Pfs*25|1|0.09|ENSG00000197299|chr15:90804264-90804265|-/ACCTTTA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	606.3703002929688	2	606.371538	1210.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.657	1	54.467	53.967	54.967	-0.1894								0	0	0	0.94851	1	21049	21049		7.1017	0.89594	1		+		6824	10042	3814	3846	6650	6650					0.13158805154080255
DVKEQLLMEM	10	Unmodified	_DVKEQLLMEM_					0	0	0			REV__ENST00000464285.5_1_20:25434089-25439234:-|nuORF	REV__ENST00000464285.5_1_20:25434089-25439234:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	617.9609375	2	618.304149	1234.59375	0.40254	0.00024889	0.51117	0.00031606	0.9137	0.00056495	618.3042227767962	18.302	0.62145	18.121	17.682	18.304	-0.18052					16	11	2	0	0	0	0.28843	1	6037	6037		13.042	0	1	3671900	+		6825	11110	3815	3847	6651	6651					-0.014167593743422913
DVKNELKVLR	10	Unmodified	_DVKNELKVLR_					0	0	0			REV__ENSG00000169193|ENST00000307471|CCDC126	REV__ENSG00000169193|ENST00000307471|CCDC126	MSMS	HCT116MG_D190212_S4	4	405.2460021972656	3	405.24695	1212.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.747	1	46.376	45.876	46.876	-0.37134								0	0	0	0.96453	1	17268	17268		0.62683	0	1		+		6826	13229	3816	3848	6652	6652					0.12117036868539799
DVKSHVCWHV	10	Unmodified	_DVKSHVCWHV_					0	0	0		nc|ENSG00000172766|Q6N069-4|NAA16;nc|ENSG00000172766|Q6N069-3|NAA16;nc|ENSG00000172766|Q6N069-2|NAA16;NAA16|p.R628Ifs*4|1|0.06|ENSG00000172766|chr13:41369218-41369219|-/TTCT|frameshift_variant;ENSG00000172766|ENST00000379406|NAA16;nc|ENSG00000172766|Q6N069-5|NAA16;ENST00000476980.5_1_13:41885589-41929305:+|nuORF	nc|ENSG00000172766|Q6N069-4|NAA16	nc|ENSG00000172766|Q6N069-4|NAA16	MSMS	HCT116MG_D190212_S4	4	605.2952880859375	2	605.295307	1208.57606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.033	1	25.743	25.243	26.243	-0.29022								0	0	0	0.92607	1	9255	9255		10.074	1.9184	1				6827	5261	3817	3849	6653	6653					-0.01988293794352103
DVKYQMWKLG	10	Unmodified	_DVKYQMWKLG_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENST00000608590.5_1_1:237955470-237994843:+|nuORF	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MSMS	HCT116MG_D190212_S2	2	634.32861328125	2	634.328816	1266.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.757	1	56.578	56.078	57.078	-0.17904								0	0	0	0.94107	1	21903	21903		6.7232	2.1943	1				6828	6246	3818	3850	6654	6654					0.020423166967702855
DVLHALKVVRF	11	Unmodified	_DVLHALKVVRF_					0	0	0		nc|ENSG00000145979|Q9P0N9-3|TBC1D7;nc|ENSG00000145979|Q9P0N9-4|TBC1D7;nc|ENSG00000145979|Q9P0N9-2|TBC1D7;ENSG00000145979|ENST00000379300|TBC1D7;ENST00000607532.5_1_6:13307806-13327130:-|nuORF	nc|ENSG00000145979|Q9P0N9-3|TBC1D7	nc|ENSG00000145979|Q9P0N9-3|TBC1D7	MSMS	HCT116MG_D190212_S4	4	648.8902587890625	2	648.892972	1295.77139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.049	1	37.666	37.166	38.166	-0.38283								0	0	0	0.95636	1	13931	13931		2.9952	0	1				6829	9491	3819	3851	6655	6655					0.13533620002158386
DVLVRREP	8	Unmodified	_DVLVRREP_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2857971191406	2	492.285266	982.555979	0.29949	0.00014744	0.21715	0.0001069	0.51664	0.00025433	492.2852399396175	50.645	1.0906	50.473	50.191	51.282	-0.1719					49	20	3	0	0	0	0.74197	1	19403	19403		18.146	3.3081	1	77918000	+		6830	12209	3820	3852	6656	6656					0.06400278537375925
DVLVRREP	8	Unmodified	_DVLVRREP_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	492.285266	982.555979	0.29949	0.00014744	0.21715	0.0001069	0.51664	0.00025433	492.2852399396175	50.645	1.0906	50.473	50.191	51.282	-0.1719	0	0	NaN	18.146	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77918000	+		6831	12209	3820	3852							0.06400278537375925
DVNDNTPNFPQ	11	Unmodified	_DVNDNTPNFPQ_					0	0	0		ENSG00000248383|ENST00000253807|PCDHAC1;nc|ENSG00000248383|Q9H158-2|PCDHAC1	ENSG00000248383|ENST00000253807|PCDHAC1	ENSG00000248383|ENST00000253807|PCDHAC1	MULTI-MSMS	HCT116MG_D190212_S4	4	630.778564453125	2	630.778199	1259.54184	0.28896	0.00018227	0.47274	0.00029819	0.7617	0.00048047	631.2802079992038	31.835	0.51933	31.46	31.07	31.59	-0.37529					12	9	2	0	0	0	0.71776	1	11587	11587		15.248	0.8431	1	4314900			6832	6573	3821	3853	6657	6657					-0.07754463472224415
DVNPPAGG	8	Unmodified	_DVNPPAGG_					0	0	0			REV__ENSG00000162517|ENST00000373703|PEF1	REV__ENSG00000162517|ENST00000373703|PEF1	MULTI-MSMS	HCT116MG_D190212_S2	2	726.3423461914062	1	726.341694	725.334418	1.2488	0.00090706	0.068501	4.9755E-05	1.3173	0.00095681	726.3415902266767	24.124	0.31162	23.744	23.615	23.926	-0.38003					11	5	3	0	0	0	0.7524	1	8638	8638		16.942	3.4344	1	26500000	+		6833	12878	3822	3854	6658	6658					-0.0392358115893785
DVNPPAGG	8	Unmodified	_DVNPPAGG_					0	0	0			REV__ENSG00000162517|ENST00000373703|PEF1	REV__ENSG00000162517|ENST00000373703|PEF1	MSMS	HCT116MG_D190212_S2	2	363.67462158203125	2	363.674485	725.334418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.16	1	23.78	23.28	24.28	-0.38003								0	0	0	0.79325	1	8645	8645		23.148	5.0134	1		+		6834	12878	3822	3854	6659	6659					-0.0392358115893785
DVPVIDREQ	9	Unmodified	_DVPVIDREQ_					0	0	0			REV__ENSG00000138801|ENST00000265174|PAPSS1	REV__ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	HCT116MG_D190212_S3	3	535.7771606445312	2	535.77747	1069.54039	0.65365	0.00035021	-1.5441	-0.00082729	-0.89044	-0.00047708	535.7759429571611	27.627	0.20792	27.439	27.361	27.569	-0.18847					5	3	2	0	0	0	0.51301	1	10003	10003		16.149	0	1	3851300	+		6835	12243	3823	3855	6660	6660					0.008399472296559907
DVREEGKENAF	11	Unmodified	_DVREEGKENAF_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	HCT116MG_D190212_S2	2	647.307861328125	2	647.307123	1292.59969	0.7632	0.00049402	0.32306	0.00020912	1.0863	0.00070314	647.3073256337678	26.301	0.41412	25.94	25.766	26.18	-0.36164					11	7	3	0	0	0	0.18623	1	9521	9521		77.049	48.554	1	14827000			6836	2195	3824	3856	6661	6661					-0.0349020154678783
DVRIVGYSLGN	11	Unmodified	_DVRIVGYSLGN_					0	0	0			REV__ENST00000480553.1_1_21:47959692-47966956:+|nuORF	REV__ENST00000480553.1_1_21:47959692-47966956:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	596.81982421875	2	596.81967	1191.62479	0.60738	0.0003625	0.12813	7.6469E-05	0.73551	0.00043897	596.819485018499	33.775	0.25929	33.485	33.356	33.615	-0.29013					9	4	3	0	0	0	0.56597	1	12433	12433		39.213	5.7681	1	11881000	+		6837	10366	3825	3857	6662	6662					0.036638980464203996
DVRIVGYSLGN	11	Unmodified	_DVRIVGYSLGN_					0	0	0			REV__ENST00000480553.1_1_21:47959692-47966956:+|nuORF	REV__ENST00000480553.1_1_21:47959692-47966956:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	596.8199462890625	2	596.81967	1191.62479	1.2113	0.00072293	-0.63037	-0.00037622	0.58094	0.00034672	596.8191441568767	33.876	0.20745	33.491	33.362	33.569	-0.38426					9	3	3	0	0	0	0.56597	1	12351	12351		39.213	5.7681	1	6695100	+		6838	10366	3825	3857	6663	6663					0.036638980464203996
DVRIVGYSLGN	11	Unmodified	_DVRIVGYSLGN_					0	0	0			REV__ENST00000480553.1_1_21:47959692-47966956:+|nuORF	REV__ENST00000480553.1_1_21:47959692-47966956:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	596.81967	1191.62479	0.60738	0.0003625	0.12813	7.6469E-05	0.73551	0.00043897	596.819485018499	33.775	0.25929	33.485	33.356	33.615	-0.29013	-0.0032871	0.000419	NaN	39.213	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11881000	+		6839	10366	3825	3857							0.036638980464203996
DVSDTDLGIFR	11	Unmodified	_DVSDTDLGIFR_					0	0	0		nc|ENSG00000072858|Q9NXL6-2|SIDT1	nc|ENSG00000072858|Q9NXL6-2|SIDT1	nc|ENSG00000072858|Q9NXL6-2|SIDT1	MULTI-MSMS	HCT116MG_D190212_S1	1	619.3070068359375	2	619.306592	1236.59863	0.81496	0.00050471	0.030907	1.9141E-05	0.84587	0.00052385	619.3064827242015	41.384	0.15631	41.384	41.289	41.445	0					4	2	2	0	0	0	0.70059	1	15604	15604		21.59	2.2282	1	9992600			6840	9379	3826	3858	6664	6664					-0.010204159157410686
DVSLAENHDP	10	Unmodified	_DVSLAENHDP_					0	0	0			REV__nc|ENSG00000100038|O95985-3|TOP3B	REV__nc|ENSG00000100038|O95985-3|TOP3B	MULTI-MSMS	HCT116MG_D190212_S3	3	548.748779296875	2	548.74891	1095.48327	0.36051	0.00019783	0.13913	7.6347E-05	0.49964	0.00027418	548.7487001620995	30.669	0.50834	30.411	30.256	30.764	-0.25724					20	12	2	0	0	0	0.67188	1	11140	11140		22.736	2.2827	1	12898000	+		6841	11061	3827	3859	6665	6665					-0.06065520046695383
DVSLAENHDP	10	Unmodified	_DVSLAENHDP_					0	0	0			REV__nc|ENSG00000100038|O95985-3|TOP3B	REV__nc|ENSG00000100038|O95985-3|TOP3B	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	548.74891	1095.48327	0.50765	0.00027857	0.34431	0.00018894	0.85195	0.00046751	548.7488581044657	30.649	0.33211	30.285	30.181	30.513	-0.36416	-0.050243	2.9995E-05	NaN	22.736	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5003400	+		6842	11061	3827	3859							-0.06065520046695383
DVVLDTFLANG	11	Unmodified	_DVVLDTFLANG_					0	0	0			REV__ENST00000556730.1_1_14:95047745-95056676:+|nuORF	REV__ENST00000556730.1_1_14:95047745-95056676:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	582.8027954101562	2	582.300778	1162.587	0.43661	0.00025424	1.3116	0.00076372	1.7482	0.001018	582.8032291129771	21.807	0.26114	21.808	21.677	21.938	0.00074577					7	4	2	0	0	0	0.7093	1	7645	7645		18.373	0.22675	1	3735600	+		6843	13955	3828	3860	6666	6666					0.012213870609457445
DVWELMSQECR	11	Unmodified	_DVWELMSQECR_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-2|GGNBP2;GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant;GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant;nc|ENSG00000278311|Q9H3C7-3|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	MULTI-MSMS	HCT116MG_D190212_S3	3	698.3053588867188	2	698.305212	1394.59587	0.78953	0.00055134	-0.76278	-0.00053265	0.026758	1.8685E-05	698.3048395960149	18.734	0.26028	18.804	18.667	18.927	0.069159					8	4	2	0	0	0	0.73536	1	6417	6417		8.7454	2.5536	1	1905800			6844	6690	3829	3861	6667	6667					-0.08564330636522755
DVWELMSQECR	11	Unmodified	_DVWELMSQECR_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-2|GGNBP2;GGNBP2|p.V346Yfs*20|2|0.22|ENSG00000278311|chr17:36581354-36581354|A/-|frameshift_variant;GGNBP2|p.D388Vfs*15|1|0.2|ENSG00000278311|chr17:36581474-36581475|-/GT|frameshift_variant;nc|ENSG00000278311|Q9H3C7-3|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	MSMS	HCT116MG_D190212_S4	4	698.3052368164062	2	698.305212	1394.59587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.014	1	18.827	18.327	19.327	-0.18674								0	0	0	0.9465	1	6421	6421		8.1555	0.54658	1				6845	6690	3829	3861	6668	6668					-0.08564330636522755
DWAAWAEVPSP	11	Unmodified	_DWAAWAEVPSP_					0	0	0		ENST00000532099.5_1_11:67050665-67051395:+|nuORF	ENST00000532099.5_1_11:67050665-67051395:+|nuORF	ENST00000532099.5_1_11:67050665-67051395:+|nuORF	MSMS	HCT116MG_D190212_S4	4	614.7833251953125	2	614.785296	1227.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.991	1	45.619	45.119	46.119	-0.37206								0	0	0	0.84073	1	16986	16986		27.629	3.839	1				6846	8631	3830	3862	6669	6669					-0.048637662533110415
DWGAVYIAKKI	11	Unmodified	_DWGAVYIAKKI_					0	0	0		tr|U7STS7|U7STS7_FUSNUGlucosamine-6-phosphatedeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nagBPE=3SV=1	tr|U7STS7|U7STS7_FUSNUGlucosamine-6-phosphatedeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nagBPE=3SV=1	tr|U7STS7|U7STS7_FUSNUGlucosamine-6-phosphatedeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nagBPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	632.54052734375	2	632.358431	1262.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.987	1	40.987	40.487	41.487	0								0	0	0	0.95686	1	15421	15421		2.7352	0	1				6847	18452	3831	3863	6670	6670					0.08146535982587011
DWHWFCVWWMH	11	Unmodified	_DWHWFCVWWMH_					0	0	0			REV__ENST00000523237.1_1_8:1721944-1728730:+|nuORF	REV__ENST00000523237.1_1_8:1721944-1728730:+|nuORF	MSMS	HCT116MG_D190212_S1	1	544.89453125	3	544.893637	1631.65908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.118	1	14.118	13.618	14.618	0								0	0	0	0.96208	1	4604	4604		0	0	1		+		6848	13715	3832	3864	6671	6671					-0.13148300337957153
DWKLFLEQHYP	11	Unmodified	_DWKLFLEQHYP_					0	0	0		DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.L285Hfs*48|1|0.04|ENSG00000181381|chr4:168453266-168453267|-/AAAAT|frameshift_variant;DDX60L|p.S286Rfs*48|1|0.06|ENSG00000181381|chr4:168453264-168453265|-/TTCTTTCT|frameshift_variant;DDX60L|p.L485Cfs*33|1|0.3|ENSG00000181381|chr4:168432517-168432517|A/-|frameshift_variant;DDX60L|p.Q542Sfs*57|1|0.06|ENSG00000181381|chr4:168430531-168430532|-/CT|frameshift_variant;DDX60L|p.T561Nfs*41|1|0.04|ENSG00000181381|chr4:168427318-168427319|-/AGTTGAAATGT|frameshift_variant	DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant	DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	492.58154296875	3	492.58211	1474.7245	0.42673	0.0002102	-0.94923	-0.00046757	-0.52249	-0.00025737	492.5817497737733	21.093	0.2161	21.093	20.956	21.173	0					9	3	3	0	0	0	0.7298	1	7417	7417		5.8681	2.7342	1	11678000			6849	661	3833	3865	6672	6672					0.00612715660372487
DWKLFLEQHYP	11	Unmodified	_DWKLFLEQHYP_					0	0	0		DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.L285Hfs*48|1|0.04|ENSG00000181381|chr4:168453266-168453267|-/AAAAT|frameshift_variant;DDX60L|p.S286Rfs*48|1|0.06|ENSG00000181381|chr4:168453264-168453265|-/TTCTTTCT|frameshift_variant;DDX60L|p.L485Cfs*33|1|0.3|ENSG00000181381|chr4:168432517-168432517|A/-|frameshift_variant;DDX60L|p.Q542Sfs*57|1|0.06|ENSG00000181381|chr4:168430531-168430532|-/CT|frameshift_variant;DDX60L|p.T561Nfs*41|1|0.04|ENSG00000181381|chr4:168427318-168427319|-/AGTTGAAATGT|frameshift_variant	DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant	DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		3	492.58211	1474.7245	0.031513	1.5523E-05	-1.197	-0.00058963	-1.1655	-0.00057411	492.5815993976611	20.882	0.15607	20.916	20.818	20.975	0.034473	-0.088407	-6.2926E-05	NaN	5.8681	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2334800			6850	661	3833	3865							0.00612715660372487
DWTYRYPFP	9	Unmodified	_DWTYRYPFP_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MSMS	HCT116MG_D190212_S3	3	622.7910766601562	2	622.790381	1243.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.721	1	50.407	49.907	50.907	-0.31381								0	0	0	0.7676	1	19134	19134		9.3474	2.6243	1		+		6851	10504	3834	3866	6673	6673					-0.04583158528066633
DYFSPKPQI	9	Unmodified	_DYFSPKPQI_					0	0	0		ENST00000323906.8_1_19:49843657-49843858:+|nuORF	ENST00000323906.8_1_19:49843657-49843858:+|nuORF	ENST00000323906.8_1_19:49843657-49843858:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	547.77978515625	2	547.779482	1093.54441	0.52609	0.00028818	0.1316	7.2089E-05	0.65769	0.00036027	547.779484984393	56.004	0.20411	55.818	55.691	55.895	-0.18565					8	3	3	0	0	0	0.49914	1	21626	21626		16.942	2.104	1	43787000			6852	7122	3835	3867	6674	6674					0.0013803672338781325
DYFSPKPQI	9	Unmodified	_DYFSPKPQI_					0	0	0		ENST00000323906.8_1_19:49843657-49843858:+|nuORF	ENST00000323906.8_1_19:49843657-49843858:+|nuORF	ENST00000323906.8_1_19:49843657-49843858:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	547.779482	1093.54441	0.54623	0.00029922	0.30582	0.00016752	0.85206	0.00046674	547.7795048166763	55.888	0.15351	55.888	55.76	55.913	0	0.034737	0.00016735	NaN	16.942	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25955000			6853	7122	3835	3867							0.0013803672338781325
DYFSPKPQI	9	Unmodified	_DYFSPKPQI_					0	0	0		ENST00000323906.8_1_19:49843657-49843858:+|nuORF	ENST00000323906.8_1_19:49843657-49843858:+|nuORF	ENST00000323906.8_1_19:49843657-49843858:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	547.779482	1093.54441	0.52609	0.00028818	0.1316	7.2089E-05	0.65769	0.00036027	547.779484984393	56.004	0.20411	55.818	55.691	55.895	-0.18565	-0.034737	-2.352E-05	NaN	16.942	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43787000			6854	7122	3835	3867							0.0013803672338781325
DYLNELREWNK	11	Unmodified	_DYLNELREWNK_					0	0	0			REV__DHRS7C|p.I279Sfs*24|1|0.33|ENSG00000184544|chr17:9771593-9771593|G/-|frameshift_variant	REV__DHRS7C|p.I279Sfs*24|1|0.33|ENSG00000184544|chr17:9771593-9771593|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	740.865478515625	2	740.364973	1478.71539	0.43331	0.0003208	-0.059785	-4.4263E-05	0.37352	0.00027654	740.3649847429506	39.123	0.52569	38.821	38.508	39.034	-0.30137					15	9	2	0	0	0	0.74191	1	14521	14521		3.8763	0.59502	1	3757100	+		6855	10360	3836	3868	6675	6675					-0.004816776959614799
DYLRTGQVP	9	Unmodified	_DYLRTGQVP_					0	0	0		nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7748413085938	2	524.774731	1047.53491	0.55396	0.0002907	-0.40926	-0.00021477	0.1447	7.5935E-05	524.7745211209956	33.824	0.35833	33.44	33.263	33.621	-0.38426					12	6	3	0	0	0	0.21251	1	12329	12329		39.957	1.9833	1	7554900			6856	4111	3837	3869	6676	6676					0.013042684378660852
DYLRTGQVP	9	Unmodified	_DYLRTGQVP_					0	0	0		nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	MULTI-MATCH	HCT116MG_D190212_S2	2		2	524.774731	1047.53491	0.69566	0.00036507	-0.0010431	-5.4737E-07	0.69462	0.00036452	524.7748374710429	33.58	0.20661	33.387	33.276	33.482	-0.19297	-0.038782	0.00036395	NaN	39.957	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3987100			6857	4111	3837	3869							0.013042684378660852
DYLRTGQVP	9	Unmodified	_DYLRTGQVP_					0	0	0		nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	524.774731	1047.53491	0.55396	0.0002907	-0.40926	-0.00021477	0.1447	7.5935E-05	524.7745211209956	33.824	0.35833	33.44	33.263	33.621	-0.38426	0.013932	-6.449E-05	NaN	39.957	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7554900			6858	4111	3837	3869							0.013042684378660852
DYNDHAPQ	8	Unmodified	_DYNDHAPQ_					0	0	0		nc|ENSG00000134765|Q08554-2|DSC1;ENSG00000134765|ENST00000257198|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	MULTI-MSMS	HCT116MG_D190212_S1	1	959.3865356445312	1	959.38535	958.378074	0.98543	0.0009454	-0.56564	-0.00054266	0.41979	0.00040274	959.3850684463105	17.437	0.20891	17.437	17.307	17.516	0					5	3	2	0	0	0	0.51336	1	5941	5941		39.957	18.211	1	2911500			6859	3305	3838	3870	6677	6677					-0.10278016452468819
DYQKFMKEM	9	Unmodified	_DYQKFMKEM_					0	0	0			REV__ENSG00000142634|ENST00000375980|EFHD2	REV__ENSG00000142634|ENST00000375980|EFHD2	MSMS	HCT116MG_D190212_S2	2	407.18939208984375	3	407.187715	1218.54132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.674	1	31.425	30.925	31.925	-0.24883								0	0	0	0.76902	1	11693	11693		2.4985	0.59211	1		+		6860	12362	3839	3871	6678	6678					-0.05921297717281959
DYQVYRSWWLW	11	Unmodified	_DYQVYRSWWLW_					0	0	0		ENST00000355622.6_1_9:120474773-120474821:+|nuORF	ENST00000355622.6_1_9:120474773-120474821:+|nuORF	ENST00000355622.6_1_9:120474773-120474821:+|nuORF	MSMS	HCT116MG_D190212_S2	2	801.3989868164062	2	801.380426	1600.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.504	1	32.274	31.774	32.774	-0.23009								0	0	0	0.95343	1	12029	12029		4.5289	3.1993	1				6861	7293	3840	3872	6679	6679					-0.03004479591049858
DYRNKEDY	8	Unmodified	_DYRNKEDY_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	HCT116MG_D190212_S4	4	551.3164672851562	2	551.743628	1101.4727	0.47402	0.00026154	-0.015058	-8.3084E-06	0.45896	0.00025323	551.743531586127	30.08	0.36402	29.723	29.545	29.909	-0.3571					16	6	4	0	0	0	0.74197	1	10884	10884		23.148	6.2061	1	24896000	+		6862	13049	3841	3873	6680	6680					-0.07397502701132908
DYYDYEDYYDD	11	Unmodified	_DYYDYEDYYDD_					0	0	0		HNRNPR|p.G466D|1|0.39|ENSG00000125944|chr1:23310959-23310959|C/T|missense_variant	HNRNPR|p.G466D|1|0.39|ENSG00000125944|chr1:23310959-23310959|C/T|missense_variant	HNRNPR|p.G466D|1|0.39|ENSG00000125944|chr1:23310959-23310959|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	769.75830078125	2	769.759534	1537.50452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.55	1	38.55	38.05	39.05	0								0	0	0	0.96157	1	14436	14436		0.26902	0.26902	1				6863	9226	3842	3874	6681	6681					-0.24273644319168852
DYYLYAIYTFF	11	Unmodified	_DYYLYAIYTFF_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	739.8486328125	2	739.847561	1477.68057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.117	1	36.732	36.232	37.232	-0.38486								0	0	0	0.95196	1	13609	13609		5.2969	1.3525	1				6864	803	3843	3875	6682	6682					-0.03916313556624118
EAAAAAAMA	9	Unmodified	_EAAAAAAMA_					0	0	0		ENSG00000105866|ENST00000222584|SP4;ENST00000440636.1_1_7:21467869-21468449:+|nuORF;SP4|p.T140Lfs*28|1|0.2|ENSG00000105866|chr7:21429579-21429579|A/-|frameshift_variant	ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	MULTI-SECPEP	HCT116MG_D190212_S2	2	776.7857666015625	1	776.360715	775.353439	1.0937	0.00084913	-0.40165	-0.00031182	0.69209	0.00053731	776.3605973120957	25.954	0.25987	25.585	25.394	25.654	-0.36914					6	4	2	0	0	0	0.067055	1	9353	9353		74.423	0	1	7724100			6865	2042	3844	3876	6683	6683					-0.04322367859560927
EAAAAAAMA	9	Unmodified	_EAAAAAAMA_					0	0	0		ENSG00000105866|ENST00000222584|SP4;ENST00000440636.1_1_7:21467869-21468449:+|nuORF;SP4|p.T140Lfs*28|1|0.2|ENSG00000105866|chr7:21429579-21429579|A/-|frameshift_variant	ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	MULTI-MSMS	HCT116MG_D190212_S4	4	776.3612060546875	1	776.360715	775.353439	0.91122	0.00070744	-0.14483	-0.00011244	0.76639	0.000595	776.3604204458511	25.848	0.26018	25.558	25.464	25.724	-0.29022					7	4	2	0	0	0	0.071351	1	9205	9205		64.236	0	1	2236200			6866	2042	3844	3876	6684	6684					-0.04322367859560927
EAAAAAVV	8	Unmodified	_EAAAAAVV_					0	0	0			REV__TBX4|p.P371Lfs*8|2|0.28|ENSG00000121075|chr17:61482984-61482984|C/-|frameshift_variant;REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF	REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	701.382568359375	1	701.382831	700.375555	0.45446	0.00031875	-0.26063	-0.0001828	0.19384	0.00013595	701.3824790280576	30.091	0.25785	29.807	29.667	29.925	-0.28453					6	4	2	0	0	0	0.25164	1	11073	11073		63.563	0	1	12633000	+		6867	11707;14649	3845	3877	6685	6685					0.013381798805198741
EAAAAAVVAA	10	Unmodified	_EAAAAAVVAA_					0	0	0			REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF	REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF	MSMS	HCT116MG_D190212_S3	3	422.2318115234375	2	422.232168	842.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.366	1	30.116	29.616	30.616	-0.24946								0	0	0	0.4096	1	11065	11065		52.268	8.4101	1		+		6868	14649	3846	3878	6686	6686					0.022255229720371972
EAAAAAVVAA	10	Unmodified	_EAAAAAVVAA_					0	0	0			REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF	REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	843.457763671875	1	843.457059	842.449782	0.64792	0.00054649	-0.31863	-0.00026875	0.32929	0.00027774	843.4567205343532	30.424	0.45667	30.067	29.857	30.314	-0.35711					61	32	3	0	0	0	0.052604	1	11006	11006		85.272	0	1	58661000	+		6869	14649	3846	3878	6687	6687					0.022255229720371972
EAAAAEEEEEE	11	Unmodified	_EAAAAEEEEEE_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MULTI-MSMS	HCT116MG_D190212_S4	4	603.7918701171875	2	603.735862	1205.45717	0.91509	0.00055247	0.7805	0.00047122	1.6956	0.0010237	603.73636475001	17.733	0.15566	17.558	17.428	17.584	-0.17501					4	2	2	0	0	0	0.74191	1	5873	5873		5.7319	1.7875	1	1334300	+		6870	13119	3847	3879	6688	6688					-0.13733878799507693
EAAAAPAG	8	Unmodified	_EAAAAPAG_					0	0	0		HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;HELZ2|p.T1019M|1|0.22|ENSG00000130589|chr20:63565766-63565766|G/A|missense_variant;ENST00000484728.6_2_2:86088279-86116028:-|nuORF;ENSG00000115525|ENST00000638572|ST3GAL5	HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	657.3209838867188	1	657.320231	656.312954	0.535	0.00035167	0.61228	0.00040247	1.1473	0.00075413	657.3202571150567	23.616	0.72933	23.368	22.958	23.688	-0.24775					17	13	2	0	0	0	0.55314	1	8257	8257		36.466	0	1	2297700			6871	3087	3848	3880	6689	6689					-0.028949661876708888
EAAAAVVAA	9	Unmodified	_EAAAAVVAA_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000398654.7_1_18:44497289-44497409:-|nuORF;LRRCC1|p.R327Efs*5|1|0.34|ENSG00000133739|chr8:85123457-85123457|A/-|frameshift_variant;LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant;LRRCC1|p.M531Nfs*28|1|0.39|ENSG00000133739|chr8:85129338-85129339|-/A|frameshift_variant;LRRCC1|p.T599Yfs*2|1|0.16|ENSG00000133739|chr8:85131781-85131782|-/T|frameshift_variant;LRRCC1|p.T701Nfs*8|1|0.21|ENSG00000133739|chr8:85134973-85134974|-/A|frameshift_variant;LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant;LRRCC1|p.T1013Nfs*7|2|0.2|ENSG00000133739|chr8:85145442-85145443|-/A|frameshift_variant;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S1	1	772.4196166992188	1	772.419945	771.412668	0.95742	0.00073953	-0.088238	-6.8157E-05	0.86919	0.00067138	772.4197974178235	28.087	0.41649	28.087	27.904	28.321	0					12	7	2	0	0	0	0.031005	1	10203	10203		85.357	0	1	32102000			6872	6078	3849	3881	6690	6690					0.017818514262785357
EAAAAVVAA	9	Unmodified	_EAAAAVVAA_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000398654.7_1_18:44497289-44497409:-|nuORF;LRRCC1|p.R327Efs*5|1|0.34|ENSG00000133739|chr8:85123457-85123457|A/-|frameshift_variant;LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant;LRRCC1|p.M531Nfs*28|1|0.39|ENSG00000133739|chr8:85129338-85129339|-/A|frameshift_variant;LRRCC1|p.T599Yfs*2|1|0.16|ENSG00000133739|chr8:85131781-85131782|-/T|frameshift_variant;LRRCC1|p.T701Nfs*8|1|0.21|ENSG00000133739|chr8:85134973-85134974|-/A|frameshift_variant;LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant;LRRCC1|p.T1013Nfs*7|2|0.2|ENSG00000133739|chr8:85145442-85145443|-/A|frameshift_variant;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S2	2	772.4203491210938	1	772.419945	771.412668	0.94425	0.00072936	-0.046408	-3.5846E-05	0.89784	0.00069351	772.4197861269395	28.437	0.56467	28.107	27.926	28.49	-0.32987					20	10	3	0	0	0	0.031005	1	10374	10374		85.357	0	1	291190000			6873	6078	3849	3881	6691	6691					0.017818514262785357
EAAAAVVAA	9	Unmodified	_EAAAAVVAA_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000398654.7_1_18:44497289-44497409:-|nuORF;LRRCC1|p.R327Efs*5|1|0.34|ENSG00000133739|chr8:85123457-85123457|A/-|frameshift_variant;LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant;LRRCC1|p.M531Nfs*28|1|0.39|ENSG00000133739|chr8:85129338-85129339|-/A|frameshift_variant;LRRCC1|p.T599Yfs*2|1|0.16|ENSG00000133739|chr8:85131781-85131782|-/T|frameshift_variant;LRRCC1|p.T701Nfs*8|1|0.21|ENSG00000133739|chr8:85134973-85134974|-/A|frameshift_variant;LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant;LRRCC1|p.T1013Nfs*7|2|0.2|ENSG00000133739|chr8:85145442-85145443|-/A|frameshift_variant;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S3	3	772.4205322265625	1	772.419945	771.412668	0.70107	0.00054152	0.21563	0.00016656	0.9167	0.00070808	772.419972489027	28.462	0.93755	28.256	28.02	28.958	-0.20593					39	17	4	0	0	0	0.031005	1	10278	10278		85.357	0	1	198640000			6874	6078	3849	3881	6692	6692					0.017818514262785357
EAAAAVVAA	9	Unmodified	_EAAAAVVAA_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000398654.7_1_18:44497289-44497409:-|nuORF;LRRCC1|p.R327Efs*5|1|0.34|ENSG00000133739|chr8:85123457-85123457|A/-|frameshift_variant;LRRCC1|p.K502Nfs*2|1|0.38|ENSG00000133739|chr8:85129254-85129254|A/-|frameshift_variant;LRRCC1|p.M531Nfs*28|1|0.39|ENSG00000133739|chr8:85129338-85129339|-/A|frameshift_variant;LRRCC1|p.T599Yfs*2|1|0.16|ENSG00000133739|chr8:85131781-85131782|-/T|frameshift_variant;LRRCC1|p.T701Nfs*8|1|0.21|ENSG00000133739|chr8:85134973-85134974|-/A|frameshift_variant;LRRCC1|p.E880Rfs*15|1|0.15|ENSG00000133739|chr8:85138174-85138175|-/A|frameshift_variant;LRRCC1|p.T1013Nfs*7|2|0.2|ENSG00000133739|chr8:85145442-85145443|-/A|frameshift_variant;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S4	4	772.4202270507812	1	772.419945	771.412668	0.83753	0.00064692	0.010526	8.1303E-06	0.84805	0.00065505	772.419792475647	28.626	0.67521	28.294	28.012	28.687	-0.33138					27	12	3	0	0	0	0.031005	1	10265	10265		85.357	0	1	83644000			6875	6078	3849	3881	6693	6693					0.017818514262785357
EAAAAVVAAA	10	Unmodified	_EAAAAVVAAA_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000398654.7_1_18:44497289-44497409:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S1	1	843.457763671875	1	843.457059	842.449782	0.73799	0.00062246	0.00099359	8.3805E-07	0.73898	0.0006233	843.4569637059384	29.812	0.25963	29.812	29.633	29.893	0					11	4	3	0	0	0	0.095673	1	10915	10915		74.929	0	1	18061000			6876	6078	3850	3882	6694	6694					0.022255229720371972
EAAAAVVAAA	10	Unmodified	_EAAAAVVAAA_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000398654.7_1_18:44497289-44497409:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S2	2	843.4584350585938	1	843.457059	842.449782	0.39937	0.00033685	-0.3736	-0.00031512	0.02577	2.1736E-05	843.4566897280553	30.235	0.4633	29.951	29.718	30.182	-0.28453					17	8	3	0	0	0	0.037761	1	11089	11089		96.285	0	1	205090000			6877	6078	3850	3882	6695	6695					0.022255229720371972
EAAAAVVAAA	10	Unmodified	_EAAAAVVAAA_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000398654.7_1_18:44497289-44497409:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S3	3	843.4575805664062	1	843.457059	842.449782	0.7232	0.00060998	-0.03303	-2.7859E-05	0.69017	0.00058213	843.4569295289255	30.293	0.44204	30.043	29.809	30.251	-0.24946					27	17	3	0	0	0	0.037761	1	11017	11017		96.285	0	1	107280000			6878	6078	3850	3882	6696	6696					0.022255229720371972
EAAAAVVAAA	10	Unmodified	_EAAAAVVAAA_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000398654.7_1_18:44497289-44497409:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	843.457059	842.449782	0.64792	0.00054649	-0.31863	-0.00026875	0.32929	0.00027774	843.4567205343532	30.424	0.45667	30.067	29.857	30.314	-0.35711	0.09866	-0.00014246	NaN	96.285	61	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58661000			6879	6078	3850	3882							0.022255229720371972
EAAAGLQP	8	Unmodified	_EAAAGLQP_					0	0	0			REV__ENST00000463276.1_1_21:35931645-35987310:-|nuORF	REV__ENST00000463276.1_1_21:35931645-35987310:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	756.0223388671875	1	756.388645	755.381368	0.54191	0.00040989	0.31994	0.000242	0.86185	0.00065189	756.3887295860314	23.409	0.36467	23.369	23.239	23.604	-0.03968					9	6	2	0	0	0	0.17973	1	8342	8342		21.747	0	1	2975700	+		6880	12798	3851	3883	6697	6697					-0.006107216078135025
EAAAHSAVT	9	Unmodified	_EAAAHSAVT_					0	0	0		ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant;nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ENSG00000198026|ENST00000322927|ZNF335	ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant	ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	428.7171630859375	2	428.711599	855.408646	-0.042182	-1.8084E-05	0.12593	5.3988E-05	0.083749	3.5904E-05	428.7116178632491	15.945	0.15661	15.611	15.533	15.689	-0.33451					4	2	2	0	0	0	0.031089	1	5327	5327		85.272	10.343	1	2716500			6881	18726	3852	3884	6698	6698					-0.024842380674272135
EAAAPVVPPP	10	Unmodified	_EAAAPVVPPP_					0	0	0			REV__nc|ENSG00000112139|Q8NFP4-2|MDGA1	REV__nc|ENSG00000112139|Q8NFP4-2|MDGA1	MSMS	HCT116MG_D190212_S1	1	474.7250061035156	2	474.263468	946.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.051	1	26.051	25.551	26.551	0								0	0	0	0.81484	1	9397	9397		26.884	3.7352	1		+		6882	11446	3853	3885	6699	6699					0.03698669040238656
EAAARAEA	8	Unmodified	_EAAARAEA_					0	0	0		LTBP4|p.P843Lfs*37|1|0.19|ENSG00000090006|chr19:40613089-40613089|C/-|frameshift_variant;LTBP4|p.P1326Hfs*103|1|0.2|ENSG00000090006|chr19:40624022-40624022|C/-|frameshift_variant;LTBP4|p.A1409Hfs*20|2|0.32|ENSG00000090006|chr19:40627006-40627006|C/-|frameshift_variant;ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4;ENSG00000173404|ENST00000310227|INSM1	LTBP4|p.P843Lfs*37|1|0.19|ENSG00000090006|chr19:40613089-40613089|C/-|frameshift_variant	LTBP4|p.P843Lfs*37|1|0.19|ENSG00000090006|chr19:40613089-40613089|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	394.6988220214844	2	394.698492	787.382431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.805	1	11.516	11.016	12.016	-0.28953								0	0	0	0.8837	1	3826	3826		10.074	0	1				6883	1535	3854	3886	6700	6700					-0.01976507238907743
EAAAVAAA	8	Unmodified	_EAAAVAAA_					0	0	0		ENSG00000204612|ENST00000376708|FOXB2;DEAF1|p.E232Rfs*41|1|0.23|ENSG00000177030|chr11:686968-686968|C/-|frameshift_variant;DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant;nc|ENSG00000177030|O75398-5|DEAF1;DEAF1|p.A487Pfs*26|1|0.09|ENSG00000177030|chr11:674581-674581|A/-|frameshift_variant;ENSG00000177030|ENST00000382409|DEAF1	ENSG00000204612|ENST00000376708|FOXB2	ENSG00000204612|ENST00000376708|FOXB2	MULTI-MSMS	HCT116MG_D190212_S2	2	673.3516235351562	1	673.351531	672.344254	0.17181	0.00011569	0.21132	0.00014229	0.38313	0.00025798	673.3514738754966	21.744	0.25982	21.359	21.219	21.479	-0.38503					6	4	2	0	0	0	0.19622	1	7690	7690		74.396	0	1	9203500			6884	6343	3855	3887	6701	6701					-0.005023931535788506
EAAAVAAA	8	Unmodified	_EAAAVAAA_					0	0	0		ENSG00000204612|ENST00000376708|FOXB2;DEAF1|p.E232Rfs*41|1|0.23|ENSG00000177030|chr11:686968-686968|C/-|frameshift_variant;DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant;nc|ENSG00000177030|O75398-5|DEAF1;DEAF1|p.A487Pfs*26|1|0.09|ENSG00000177030|chr11:674581-674581|A/-|frameshift_variant;ENSG00000177030|ENST00000382409|DEAF1	ENSG00000204612|ENST00000376708|FOXB2	ENSG00000204612|ENST00000376708|FOXB2	MULTI-MSMS	HCT116MG_D190212_S3	3	673.3515014648438	1	673.351531	672.344254	0.77701	0.0005232	-0.15153	-0.00010203	0.62547	0.00042116	673.3513276045288	21.385	0.31757	21.403	21.271	21.588	0.018446					6	5	2	0	0	0	0.36164	1	7476	7476		53.576	0	1	3404800			6885	6343	3855	3887	6702	6702					-0.005023931535788506
EAADDRERLY	10	Unmodified	_EAADDRERLY_					0	0	0		ENST00000379953.6_1_6:6654860-6655043:+|nuORF	ENST00000379953.6_1_6:6654860-6655043:+|nuORF	ENST00000379953.6_1_6:6654860-6655043:+|nuORF	MSMS	HCT116MG_D190212_S2	2	619.2933349609375	2	619.294016	1236.57348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.919	1	17.562	17.062	18.062	-0.35647								0	0	0	0.91279	1	6128	6128		13.042	0	1				6886	7559	3856	3888	6703	6703					-0.03534470718273042
EAADKFGQI	9	Unmodified	_EAADKFGQI_					0	0	0			REV__nc|ENSG00000086475|P49903-2|SEPHS1	REV__nc|ENSG00000086475|P49903-2|SEPHS1	MSMS	HCT116MG_D190212_S4	4	489.74835205078125	2	489.748182	977.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.64	1	27.318	26.818	27.818	-0.32157								0	0	0	0.76694	1	9904	9904		11.64	0	1		+		6887	10933	3857	3889	6704	6704					-0.007831093447975945
EAAEAAAAA	9	Unmodified	_EAAEAAAAA_					0	0	0		ENSG00000187954|ENST00000530374|ZFTRAF1;ENST00000528558.1_1_8:145677565-145687797:-|nuORF	ENSG00000187954|ENST00000530374|ZFTRAF1	ENSG00000187954|ENST00000530374|ZFTRAF1	MULTI-MSMS	HCT116MG_D190212_S2	2	774.3632202148438	1	774.362824	773.355547	0.51954	0.00040231	0.23694	0.00018348	0.75648	0.00058579	774.3628305202318	18.554	0.57313	18.191	17.904	18.477	-0.36325					17	10	2	0	0	0	0.011506	1	6388	6388		109.63	0	1	30463000			6888	5964	3858	3890	6705	6705					-0.040196158501089485
EAAEAAAAA	9	Unmodified	_EAAEAAAAA_					0	0	0		ENSG00000187954|ENST00000530374|ZFTRAF1;ENST00000528558.1_1_8:145677565-145687797:-|nuORF	ENSG00000187954|ENST00000530374|ZFTRAF1	ENSG00000187954|ENST00000530374|ZFTRAF1	MULTI-MSMS	HCT116MG_D190212_S3	3	774.36328125	1	774.362824	773.355547	0.5148	0.00039864	0.36861	0.00028544	0.88342	0.00068409	774.3628914320487	18.05	0.67676	18.127	17.841	18.518	0.076334					19	12	2	0	0	0	0.011506	1	6113	6113		109.63	0	1	12561000			6889	5964	3858	3890	6706	6706					-0.040196158501089485
EAAERVESA	9	Unmodified	_EAAERVESA_					0	0	0		nc|ENSG00000230487|Q96PY0|PSMG3-AS1;ENST00000437621.6_1_7:1626575-1627631:+|nuORF	nc|ENSG00000230487|Q96PY0|PSMG3-AS1	nc|ENSG00000230487|Q96PY0|PSMG3-AS1	MULTI-MSMS	HCT116MG_D190212_S2	2	961.458984375	1	961.458515	960.451239	0.62028	0.00059637	-0.026478	-2.5458E-05	0.5938	0.00057092	961.4583834530475	19.528	0.20736	19.158	19.044	19.252	-0.3695					5	3	2	0	0	0	0.030039	1	6788	6788		86.332	6.7355	1	9761600			6890	7890	3859	3891	6707	6707					-0.030568877298492225
EAAERVESA	9	Unmodified	_EAAERVESA_					0	0	0		nc|ENSG00000230487|Q96PY0|PSMG3-AS1;ENST00000437621.6_1_7:1626575-1627631:+|nuORF	nc|ENSG00000230487|Q96PY0|PSMG3-AS1	nc|ENSG00000230487|Q96PY0|PSMG3-AS1	MULTI-MSMS	HCT116MG_D190212_S3	3	961.4588623046875	1	961.458515	960.451239	0.65701	0.00063169	-0.13572	-0.00013049	0.5213	0.0005012	961.4582512988168	18.728	0.26028	18.797	18.667	18.927	0.069159					7	4	2	0	0	0	0.040027	1	6390	6390		79.596	6.6284	1	5553700			6891	7890	3859	3891	6708	6708					-0.030568877298492225
EAAERVESA	9	Unmodified	_EAAERVESA_					0	0	0		nc|ENSG00000230487|Q96PY0|PSMG3-AS1;ENST00000437621.6_1_7:1626575-1627631:+|nuORF	nc|ENSG00000230487|Q96PY0|PSMG3-AS1	nc|ENSG00000230487|Q96PY0|PSMG3-AS1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	961.458515	960.451239	0.50932	0.00048969	0.52529	0.00050505	1.0346	0.00099474	961.4590358459366	19.03	0.20792	18.843	18.713	18.921	-0.18674	-0.089546	0.00057484	NaN	86.332	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1812900			6892	7890	3859	3891							-0.030568877298492225
EAAERWQKKWW	11	Unmodified	_EAAERWQKKWW_					0	0	0		ENST00000481752.5_2_3:136581145-136646865:+|nuORF	ENST00000481752.5_2_3:136581145-136646865:+|nuORF	ENST00000481752.5_2_3:136581145-136646865:+|nuORF	MSMS	HCT116MG_D190212_S2	2	759.3888549804688	2	759.386042	1516.75753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.886	1	30.619	30.119	31.119	-0.26704								0	0	0	0.95196	1	11373	11373		5.2969	3.9674	1				6893	8252	3860	3892	6709	6709					0.019823425030836006
EAAETHDD	8	Unmodified	_EAAETHDD_					0	0	0		ENSG00000156140|ENST00000286657|ADAMTS3	ENSG00000156140|ENST00000286657|ADAMTS3	ENSG00000156140|ENST00000286657|ADAMTS3	MSMS	HCT116MG_D190212_S1	1	444.17095947265625	2	444.172504	886.330455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.37	1	25.37	24.87	25.87	0								0	0	0	0.8837	1	9123	9123		5.2307	0.90143	1				6894	4275	3861	3893	6710	6710					-0.11725715443333229
EAAFEFEV	8	Unmodified	_EAAFEFEV_					0	0	0		ENST00000567073.2_1_16:33123771-33127908:-|nuORF	ENST00000567073.2_1_16:33123771-33127908:-|nuORF	ENST00000567073.2_1_16:33123771-33127908:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	471.21612548828125	2	471.216183	940.417813	0.1574	7.4168E-05	-0.18604	-8.7665E-05	-0.028642	-1.3497E-05	471.2160923296506	37.098	0.36083	36.983	36.808	37.168	-0.11478					11	6	3	0	0	0	0.69862	1	13905	13905		23.148	0.41214	1	19000000			6895	8867	3862	3894	6711	6711					-0.05477889501742084
EAAGAPDRGR	10	Unmodified	_EAAGAPDRGR_					0	0	0		SLC35G1|p.V92Cfs*7|2|0.27|ENSG00000176273|chr10:93898660-93898660|A/-|frameshift_variant;SLC35G1|p.S209Kfs*34|1|0.05|ENSG00000176273|chr10:93901016-93901017|-/AAGCATAG|frameshift_variant;nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1	SLC35G1|p.V92Cfs*7|2|0.27|ENSG00000176273|chr10:93898660-93898660|A/-|frameshift_variant	SLC35G1|p.V92Cfs*7|2|0.27|ENSG00000176273|chr10:93898660-93898660|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	502.7851867675781	2	500.251954	998.489356	0.33494	0.00016755	-2.2535	-0.0011273	-1.9186	-0.00095977	500.2500420621381	21.422	0.36239	21.039	20.859	21.221	-0.38288					23	6	6	0	0	0	0.67188	1	7535	7535		22.736	3.4793	1	247650000			6896	5415	3863	3895	6712	6712					-0.009949570245225914
EAAGGFYYKDH	11	Unmodified	_EAAGGFYYKDH_					0	0	0		MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant;ENST00000508148.1_1_1:1560498-1561120:+|nuORF;ENST00000467597.1_1_1:1560168-1561120:+|nuORF;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2	MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant	MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	629.2810668945312	2	629.280377	1256.5462	0.37744	0.00023751	-0.66819	-0.00042048	-0.29076	-0.00018297	629.2800270826482	16.293	0.83222	16.379	15.769	16.601	0.085423					35	15	3	0	0	0	0.72373	1	5282	5282		13.042	3.6593	1	7102600			6897	9330	3864	3896	6713	6713					-0.07180954258660677
EAAGGFYYKDH	11	Unmodified	_EAAGGFYYKDH_					0	0	0		MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant;ENST00000508148.1_1_1:1560498-1561120:+|nuORF;ENST00000467597.1_1_1:1560168-1561120:+|nuORF;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2	MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant	MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	629.280377	1256.5462	0.52194	0.00032845	-0.64632	-0.00040672	-0.12438	-7.827E-05	629.2798388467068	17.127	0.57265	16.777	16.353	16.925	-0.34933	0.19923	1.5513E-05	NaN	13.042	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3698200			6898	9330	3864	3896							-0.07180954258660677
EAAGSVVLAA	10	Unmodified	_EAAGSVVLAA_					0	0	0			REV__ENSG00000108963|ENST00000263083|DPH1	REV__ENSG00000108963|ENST00000263083|DPH1	MULTI-MSMS	HCT116MG_D190212_S3	3	444.2451171875	2	444.245275	886.475997	0.22259	9.8886E-05	-1.1224	-0.00049862	-0.8998	-0.00039973	444.24464225163433	25.388	0.31227	25.282	25.048	25.36	-0.10618					7	5	2	0	0	0	0.20843	1	9077	9077		58.679	10.93	1	12800000	+		6899	11362	3865	3897	6714	6714					0.028217921435157223
EAAGSVVLAA	10	Unmodified	_EAAGSVVLAA_					0	0	0			REV__ENSG00000108963|ENST00000263083|DPH1	REV__ENSG00000108963|ENST00000263083|DPH1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	444.245275	886.475997	0.070975	3.153E-05	-0.096246	-4.2757E-05	-0.025271	-1.1226E-05	444.24503158346016	25.652	0.20714	25.283	25.187	25.394	-0.36914	0.00046913	0.00034473	NaN	58.679	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7079000	+		6900	11362	3865	3897							0.028217921435157223
EAAGSVVLAA	10	Unmodified	_EAAGSVVLAA_					0	0	0			REV__ENSG00000108963|ENST00000263083|DPH1	REV__ENSG00000108963|ENST00000263083|DPH1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	444.245275	886.475997	0.22259	9.8886E-05	-1.1224	-0.00049862	-0.8998	-0.00039973	444.24464225163433	25.388	0.31227	25.282	25.048	25.36	-0.10618	-0.00046913	-0.00056699	NaN	58.679	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12800000	+		6901	11362	3865	3897							0.028217921435157223
EAALSKPGAA	10	Unmodified	_EAALSKPGAA_					0	0	0			REV__ENST00000296603.4_1_5:36151683-36151785:-|nuORF	REV__ENST00000296603.4_1_5:36151683-36151785:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	457.7508239746094	2	457.750724	913.486896	0.29194	0.00013363	0.012302	5.6314E-06	0.30424	0.00013927	457.75063596963014	19.98	0.36459	20.028	19.895	20.259	0.048107					14	6	3	0	0	0	0.099369	1	6887	6887		74.2	2.2774	1	12698000	+		6902	14762	3866	3898	6715	6715					0.026691945178072274
EAALSKPGAA	10	Unmodified	_EAALSKPGAA_					0	0	0			REV__ENST00000296603.4_1_5:36151683-36151785:-|nuORF	REV__ENST00000296603.4_1_5:36151683-36151785:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	457.750724	913.486896	0.14594	6.6804E-05	0.13874	6.3508E-05	0.28468	0.00013031	457.7507110368199	20.642	0.26388	20.262	20.13	20.394	-0.37949	0.11694	7.7751E-05	NaN	74.2	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33740000	+		6903	14762	3866	3898							0.026691945178072274
EAALSKPGAA	10	Unmodified	_EAALSKPGAA_					0	0	0			REV__ENST00000296603.4_1_5:36151683-36151785:-|nuORF	REV__ENST00000296603.4_1_5:36151683-36151785:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	457.750724	913.486896	0.29194	0.00013363	0.012302	5.6314E-06	0.30424	0.00013927	457.75063596963014	19.98	0.36459	20.028	19.895	20.259	0.048107	-0.11694	-3.8002E-05	NaN	74.2	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12698000	+		6904	14762	3866	3898							0.026691945178072274
EAALYPRGT	9	Unmodified	_EAALYPRGT_					0	0	0		ENST00000389266.7_1_7:30640708-30640804:+|nuORF	ENST00000389266.7_1_7:30640708-30640804:+|nuORF	ENST00000389266.7_1_7:30640708-30640804:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	489.2558898925781	2	489.256174	976.497795	0.55628	0.00027216	-0.027644	-1.3525E-05	0.52864	0.00025864	489.25602373276695	33.325	0.31046	33.132	32.914	33.225	-0.19297					8	5	2	0	0	0	0.45867	1	12362	12362		19.257	1.1106	1	21870000			6905	7595	3867	3899	6716	6716					0.00860596892096055
EAAMKSFHED	10	Unmodified	_EAAMKSFHED_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	HCT116MG_D190212_S2	2	582.2250366210938	2	582.753138	1163.49172	0.5761	0.00033572	-0.9273	-0.00054039	-0.3512	-0.00020466	582.7528146547647	25.26	0.2599	24.885	24.712	24.972	-0.37521					8	4	3	0	0	0	0.28233	1	9044	9044		21.537	5.3879	1	11130000	+		6906	11857	3868	3900	6717	6717					-0.0834828940173793
EAAMRRYPT	9	Unmodified	_EAAMRRYPT_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	HCT116MG_D190212_S2	2	366.2020263671875	3	365.518564	1093.53386	-0.029122	-1.0645E-05	-0.29748	-0.00010873	-0.3266	-0.00011938	365.51841667553487	25.978	0.57092	25.609	25.291	25.862	-0.36914					15	10	2	0	0	0	0.24622	1	9461	9461		4.5289	2.0304	1	9334000			6907	2622	3869	3901	6718	6718					-0.009162692026848163
EAAPEGPDL	9	Unmodified	_EAAPEGPDL_					0	0	0			REV__ENST00000559770.1_1_15:89449938-89450435:-|nuORF	REV__ENST00000559770.1_1_15:89449938-89450435:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	449.71124267578125	2	449.711265	897.407977	0.20252	9.1075E-05	0.060382	2.7154E-05	0.2629	0.00011823	449.71113664390407	30.031	0.52723	29.795	29.555	30.082	-0.23655					27	9	4	0	0	0	0.023611	1	10916	10916		92.822	7.4654	1	76244000	+		6908	16479	3870	3902	6719	6719					-0.04483077507143207
EAAPEGPDL	9	Unmodified	_EAAPEGPDL_					0	0	0			REV__ENST00000559770.1_1_15:89449938-89450435:-|nuORF	REV__ENST00000559770.1_1_15:89449938-89450435:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	449.7112121582031	2	449.711265	897.407977	0.27057	0.00012168	-0.082967	-3.7311E-05	0.18761	8.4369E-05	449.7111385978188	30.14	0.40618	29.783	29.597	30.003	-0.3571					17	7	3	0	0	0	0.023611	1	10903	10903		92.822	7.4654	1	39648000	+		6909	16479	3870	3902	6720	6720					-0.04483077507143207
EAAPEGPDL	9	Unmodified	_EAAPEGPDL_					0	0	0			REV__ENST00000559770.1_1_15:89449938-89450435:-|nuORF	REV__ENST00000559770.1_1_15:89449938-89450435:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	449.711265	897.407977	0.20252	9.1075E-05	0.060382	2.7154E-05	0.2629	0.00011823	449.71113664390407	30.031	0.52723	29.795	29.555	30.082	-0.23655	0.070333	3.8916E-05	NaN	92.822	27	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76244000	+		6910	16479	3870	3902							-0.04483077507143207
EAAPEGPDL	9	Unmodified	_EAAPEGPDL_					0	0	0			REV__ENST00000559770.1_1_15:89449938-89450435:-|nuORF	REV__ENST00000559770.1_1_15:89449938-89450435:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	449.711265	897.407977	0.27057	0.00012168	-0.082967	-3.7311E-05	0.18761	8.4369E-05	449.7111385978188	30.14	0.40618	29.783	29.597	30.003	-0.3571	0.058198	-9.0015E-05	NaN	92.822	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39648000	+		6911	16479	3870	3902							-0.04483077507143207
EAAPEGSL	8	Unmodified	_EAAPEGSL_					0	0	0		MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3;nc|ENSG00000129680|Q8IWC1-2|MAP7D3	MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	MAP7D3|p.D820Tfs*7|1|0.12|ENSG00000129680|chrX:136220794-136220794|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	387.1866149902344	2	387.187426	772.360298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.47	1	21.087	20.587	21.587	-0.38288								0	0	0	0.8837	1	7558	7558		13.508	0	1				6912	3042	3871	3903	6721	6721					-0.034987317073273516
EAAPGHSC	8	Unmodified	_EAAPGHSC_					0	0	0		ENST00000488738.5_1_20:61584120-61584168:+|nuORF	ENST00000488738.5_1_20:61584120-61584168:+|nuORF	ENST00000488738.5_1_20:61584120-61584168:+|nuORF	MSMS	HCT116MG_D190212_S4	4	386.1575012207031	2	386.158145	770.301738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.818	1	34.432	33.932	34.932	-0.38606								0	0	0	0.8837	1	12728	12728		5.2307	2.6532	1				6913	8320	3872	3904	6722	6722					-0.0926011155344213
EAAPHHQP	8	Unmodified	_EAAPHHQP_					0	0	0		SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant;SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG;SPEG|p.Q2233Rfs*6|2|0.25|ENSG00000072195|chr2:219484154-219484154|C/-|frameshift_variant;SPEG|p.R2315Qfs*8|1|0.31|ENSG00000072195|chr2:219484399-219484400|-/C|frameshift_variant	SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	443.71368408203125	2	443.711934	885.409314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.281	1	18.103	17.603	18.603	-0.1782								0	0	0	0.8837	1	6125	6125		13.508	0.97634	1				6914	1264	3873	3905	6723	6723					-0.03797398627716575
EAAPVRGQP	9	Unmodified	_EAAPVRGQP_					0	0	0			REV__ENST00000293968.11_1_16:2487229-2489355:+|nuORF	REV__ENST00000293968.11_1_16:2487229-2489355:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	462.7487487792969	2	462.748516	923.482479	0.34166	0.0001581	-0.078255	-3.6213E-05	0.2634	0.00012189	462.7483764033952	19.191	1.1974	19.26	19.031	20.228	0.069159					53	22	4	0	0	0	0.35128	1	6783	6783		25.399	4.9457	1	21702000	+		6915	14754	3874	3906	6724	6724					0.017677300949117125
EAAPVRGQP	9	Unmodified	_EAAPVRGQP_					0	0	0			REV__ENST00000293968.11_1_16:2487229-2489355:+|nuORF	REV__ENST00000293968.11_1_16:2487229-2489355:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	462.74835205078125	2	462.748516	923.482479	0.022687	1.0498E-05	0.010134	4.6896E-06	0.032821	1.5188E-05	462.74848521261936	19.533	0.92599	19.342	19.072	19.998	-0.19145					37	17	3	0	0	0	0.1754	2	6610	6610;6841		43.858	7.7313	1	6515000	+		6916	14754	3874	3906	6725;6726	6725					0.017677300949117125
EAAQEAGAQP	10	Unmodified	_EAAQEAGAQP_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MSMS	HCT116MG_D190212_S3	3	486.225341796875	2	486.225071	970.435589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.049	1	21.084	20.584	21.584	0.034473								0	0	0	0.87399	1	7315	7315		19.257	1.122	1				6917	5828	3875	3907	6727	6727					-0.05081174246902265
EAAQTVKG	8	Unmodified	_EAAQTVKG_					0	0	0		nc|ENSG00000159023|P11171-4|EPB41	nc|ENSG00000159023|P11171-4|EPB41	nc|ENSG00000159023|P11171-4|EPB41	MULTI-MSMS	HCT116MG_D190212_S2	2	402.2163391113281	2	402.216517	802.418482	-0.071028	-2.8569E-05	0.17333	6.9716E-05	0.1023	4.1147E-05	402.21651454818044	19.271	0.31273	18.902	18.784	19.096	-0.3695					6	5	2	0	0	0	0.79834	1	6711	6711		11.64	0	1	5235100			6918	9512	3876	3908	6728	6728					0.009369499379658919
EAARNTPD	8	Unmodified	_EAARNTPD_					0	0	0			REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	436.87408447265625	2	437.206681	872.398809	0.13912	6.0826E-05	3.0279	0.0013238	3.1671	0.0013847	437.2087629458736	19.185	0.25974	19.254	19.031	19.291	0.069159					8	4	3	0	0	0	0.28275	1	6569	6569		19.439	2.4967	1	3765200	+		6919	15021	3877	3909	6729	6729					-0.04249426072806273
EAARQRDLAA	10	Unmodified	_EAARQRDLAA_					0	0	0		FAM161B|p.N537Efs*5|1|0.35|ENSG00000156050|chr14:73938094-73938095|-/T|frameshift_variant;ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B	FAM161B|p.N537Efs*5|1|0.35|ENSG00000156050|chr14:73938094-73938095|-/T|frameshift_variant	FAM161B|p.N537Efs*5|1|0.35|ENSG00000156050|chr14:73938094-73938095|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	367.5314636230469	3	367.53175	1099.57342	-0.24213	-8.8989E-05	-0.22989	-8.4494E-05	-0.47202	-0.00017348	367.5316438628412	17.823	0.2612	17.467	17.336	17.597	-0.35647					7	4	2	0	0	0	0.67282	1	6121	6121		15.538	0	1	5627700			6920	4273	3878	3910	6730	6730					0.02761574072383155
EAASPNQI	8	Unmodified	_EAASPNQI_					0	0	0			REV__ENST00000524474.5_1_11:720617-722550:+|nuORF	REV__ENST00000524474.5_1_11:720617-722550:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	829.4063720703125	1	829.405023	828.397747	0.83319	0.00069105	0.2679	0.0002222	1.1011	0.00091325	829.4052467006162	21.688	0.21091	21.707	21.588	21.799	0.018448					5	3	2	0	0	0	0.60054	1	7588	7588		32.305	1.6689	1	2240900	+		6921	13563	3879	3911	6731	6731					-0.0233164044170735
EAAVAAAGAA	10	Unmodified	_EAAVAAAGAA_					0	0	0		ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	MULTI-MSMS	HCT116MG_D190212_S3	3	801.4107666015625	1	801.410108	800.402832	0.91274	0.00073148	0.14008	0.00011226	1.0528	0.00084375	801.410019637838	26.548	0.20816	26.399	26.255	26.463	-0.14924					6	3	2	0	0	0	0.079351	1	9542	9542		78.149	0	1	3732100			6922	6653	3880	3912	6732	6732					-0.005353365791052056
EAAVAAAGAA	10	Unmodified	_EAAVAAAGAA_					0	0	0		ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	MULTI-MATCH	HCT116MG_D190212_S2	2		1	801.410108	800.402832	0.80461	0.00064482	0.13308	0.00010665	0.93768	0.00075147	801.4099044122461	26.671	0.20742	26.31	26.18	26.387	-0.36164	-0.044739	-3.5368E-06	NaN	78.149	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5940900			6923	6653	3880	3912							-0.005353365791052056
EAAVVAAAV	9	Unmodified	_EAAVVAAAV_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	HCT116MG_D190212_S1	1	800.4518432617188	1	800.451245	799.443968	0.88718	0.00071014	0.028133	2.2519E-05	0.91531	0.00073266	800.4511080497446	34.297	0.52106	34.297	34.076	34.597	0					23	9	3	0	0	0	0.050578	1	12689	12689		74.423	0	1	136240000			6924	4211	3881	3913	6733	6733					0.036224244603772604
EAAVVAAAV	9	Unmodified	_EAAVVAAAV_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	HCT116MG_D190212_S2	2	400.72900390625	2	400.729261	799.443968	0.21065	8.4413E-05	-0.4602	-0.00018441	-0.24955	-0.0001	400.72898302999016	34.496	0.30949	34.321	34.175	34.485	-0.17512					7	5	2	0	0	0	0.1037	1	12840	12840		57.471	0	1	19401000			6925	4211	3881	3913	6734	6734					0.036224244603772604
EAAVVAAAV	9	Unmodified	_EAAVVAAAV_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	HCT116MG_D190212_S3	3	400.7291564941406	2	400.729261	799.443968	-0.16788	-6.7273E-05	-0.058838	-2.3578E-05	-0.22671	-9.085E-05	400.7291927910207	34.607	0.36352	34.31	34.129	34.492	-0.29707					9	6	2	0	0	0	0.1037	1	12735	12735		57.471	0	1	8784800			6926	4211	3881	3913	6735	6735					0.036224244603772604
EAAVVAAAV	9	Unmodified	_EAAVVAAAV_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	HCT116MG_D190212_S3	3	800.4519653320312	1	800.451245	799.443968	0.63765	0.00051041	0.0026021	2.0829E-06	0.64025	0.00051249	800.4511413087541	34.556	0.93469	34.259	34.025	34.959	-0.29707					54	17	5	0	0	0	0.1037	1	12935	12935		57.471	0	1	650040000			6927	4211	3881	3913	6736	6736					0.036224244603772604
EAAVVTAVAA	10	Unmodified	_EAAVVTAVAA_					0	0	0			REV__ENST00000339686.7_1_19:35996627-36002696:-|nuORF	REV__ENST00000339686.7_1_19:35996627-36002696:-|nuORF	MSMS	HCT116MG_D190212_S2	2	451.25323486328125	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.445	1	32.214	31.714	32.714	-0.23009								0	0	0	0.31833	1	12005	12005		58.679	3.1761	1		+		6928	10372	3882	3914	6737	6737					0.03742078660570769
EAAWMRPC	8	Unmodified	_EAAWMRPC_					0	0	0			REV__ENST00000565062.5_1_16:90097706-90103159:+|nuORF	REV__ENST00000565062.5_1_16:90097706-90103159:+|nuORF	MSMS	HCT116MG_D190212_S3	3	482.2121276855469	2	482.212398	962.410242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.745	1	15.831	15.331	16.331	0.085423								0	0	0	0.87079	1	5175	5175		16.942	0	1		+		6929	16528	3883	3915	6738	6738					-0.07246643574671907
EAAWPGPA	8	Unmodified	_EAAWPGPA_					0	0	0			REV__IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant	REV__IRGQ|p.A307Pfs*48|1|0.11|ENSG00000167378|chr19:43592979-43592979|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	798.3789672851562	1	798.37808	797.370804	1.1778	0.00094035	-0.016727	-1.3354E-05	1.1611	0.000927	798.3779542991556	36.002	0.98167	35.874	35.452	36.434	-0.12799					28	18	2	0	0	0	0.77285	1	13471	13471		14.582	0	1	14983000	+		6930	13146	3884	3916	6739	6739					-0.03598704262242336
EAAWRHEEES	10	Unmodified	_EAAWRHEEES_					0	0	0		CROCC|p.R280H|1|0.18|ENSG00000058453|chr1:16930584-16930584|G/A|missense_variant	CROCC|p.R280H|1|0.18|ENSG00000058453|chr1:16930584-16930584|G/A|missense_variant	CROCC|p.R280H|1|0.18|ENSG00000058453|chr1:16930584-16930584|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	622.2677612304688	2	622.270541	1242.52653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.703	1	27.361	26.861	27.861	-0.34201								0	0	0	0.92917	1	10074	10074		9.3831	1.2276	1				6931	601	3885	3917	6740	6740					-0.08503330269422804
EAAWSRVE	8	Unmodified	_EAAWSRVE_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MSMS	HCT116MG_D190212_S3	3	474.23291015625	2	474.232699	946.450845	0.32799	0.00015554	0.40179	0.00019054	0.72978	0.00034609	474.23280883591065	25.818	0.31286	25.69	25.546	25.859	-0.12795					9	5	3	0	0	0	0.49192	1	9254	9254		41.84	9.5341	1	6045200			6932	4558	3886	3918	6741	6741					-0.024522626590396612
EAAWSRVE	8	Unmodified	_EAAWSRVE_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MATCH	HCT116MG_D190212_S2	2		2	474.232699	946.450845	0.5069	0.00024039	-0.16036	-7.6049E-05	0.34653	0.00016434	474.23259460535365	26.153	0.20798	25.792	25.662	25.87	-0.36164	0.013096	-0.00015577	NaN	41.84	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13623000			6933	4558	3886	3918							-0.024522626590396612
EAAWSRVE	8	Unmodified	_EAAWSRVE_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MATCH	HCT116MG_D190212_S4	4		2	474.232699	946.450845	0.36016	0.0001708	0.18912	8.9686E-05	0.54928	0.00026049	474.23263235137233	26.144	0.20832	25.854	25.724	25.932	-0.29022	0.075239	0.0001757	NaN	41.84	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1660600			6934	4558	3886	3918							-0.024522626590396612
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.08642578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.46944	1	0.46944	-0.030564	0.96944	0								0	0	0	0.8837	1	144	144		0	0	1				6935	9466	3887	3919	6742	6742					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.0864562988281	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2021	1	1.2021	0.70209	1.7021	0								0	0	0	0.8837	1	366	366		0	0	1				6936	9466	3887	3919	6743	6743					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.08636474609375	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3248	1	2.3248	1.8248	2.8248	0								0	0	0	0.8837	1	703	703		0	0	1				6937	9466	3887	3919	6744	6744					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.0863952636719	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8289	1	2.8289	2.3289	3.3289	0								0	0	0	0.8837	1	850	850		0	0	1				6938	9466	3887	3919	6745	6745					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	395.8772277832031	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5559	1	3.5559	3.0559	4.0559	0								0	0	0	0.8837	1	1060	1060		0	0	1				6939	9466	3887	3919	6746	6746					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.08642578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3675	1	4.3675	3.8675	4.8675	0								0	0	0	0.8837	1	1317	1317		0	0	1				6940	9466	3887	3919	6747	6747					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.0865478515625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1822	1	8.1822	7.6822	8.6822	0								0	0	0	0.8837	1	2468	2468		0	0	1				6941	9466	3887	3919	6748	6748					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.086181640625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1524	1	9.1524	8.6524	9.6524	0								0	0	0	0.8837	1	2771	2771		0	0	1				6942	9466	3887	3919	6749	6749					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.0860290527344	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7888	1	9.7888	9.2888	10.289	0								0	0	0	0.8837	1	2975	2975		0	0	1				6943	9466	3887	3919	6750	6750					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.0863342285156	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.301	1	63.301	62.801	63.801	0								0	0	0	0.8837	1	24455	24455		0	0	1				6944	9466	3887	3919	6751	6751					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.086181640625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.824	1	63.824	63.324	64.324	0								0	0	0	0.8837	1	24651	24651		0	0	1				6945	9466	3887	3919	6752	6752					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	396.0867004394531	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.441	1	64.441	63.941	64.941	0								0	0	0	0.8837	1	24856	24856		0	0	1				6946	9466	3887	3919	6753	6753					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0863952636719	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.27293	1	0.26899	-0.23101	0.76899	-0.0039395								0	0	0	0.8837	1	102	102		0	0	1				6947	9466	3887	3919	6754	6754					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.08642578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0567	1	1.0505	0.55047	1.5505	-0.0062599								0	0	0	0.8837	1	339	339		0	0	1				6948	9466	3887	3919	6755	6755					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0863037109375	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9302	1	1.917	1.417	2.417	-0.013221								0	0	0	0.8837	1	624	624		0	0	1				6949	9466	3887	3919	6756	6756					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.08660888671875	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3275	1	3.2654	2.7654	3.7654	-0.062129								0	0	0	0.8837	1	1064	1064		0	0	1				6950	9466	3887	3919	6757	6757					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0863952636719	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3427	1	4.2536	3.7536	4.7536	-0.089082								0	0	0	0.8837	1	1376	1376		0	0	1				6951	9466	3887	3919	6758	6758					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0865783691406	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8635	1	4.7448	4.2448	5.2448	-0.11871								0	0	0	0.8837	1	1540	1540		0	0	1				6952	9466	3887	3919	6759	6759					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0867614746094	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5769	1	5.4288	4.9288	5.9288	-0.14816								0	0	0	0.8837	1	1767	1767		0	0	1				6953	9466	3887	3919	6760	6760					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0865173339844	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1824	1	6.0078	5.5078	6.5078	-0.17458								0	0	0	0.8837	1	1949	1949		0	0	1				6954	9466	3887	3919	6761	6761					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.08709716796875	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.5739	1	7.358	6.858	7.858	-0.21581								0	0	0	0.8837	1	2371	2371		0	0	1				6955	9466	3887	3919	6762	6762					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.08648681640625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.188	1	7.9568	7.4568	8.4568	-0.23116								0	0	0	0.8837	1	2558	2558		0	0	1				6956	9466	3887	3919	6763	6763					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	395.9861145019531	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4805	1	9.2255	8.7255	9.7255	-0.25508								0	0	0	0.8837	1	2964	2964		0	0	1				6957	9466	3887	3919	6764	6764					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.08642578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5533	1	9.2982	8.7982	9.7982	-0.25508								0	0	0	0.8837	1	2989	2989		0	0	1				6958	9466	3887	3919	6765	6765					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0865173339844	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.969	1	10.695	10.195	11.195	-0.27365								0	0	0	0.8837	1	3506	3506		0	0	1				6959	9466	3887	3919	6766	6766					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0865173339844	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.694	1	11.412	10.912	11.912	-0.28186								0	0	0	0.8837	1	3783	3783		0	0	1				6960	9466	3887	3919	6767	6767					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0862731933594	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.438	1	12.141	11.641	12.641	-0.29721								0	0	0	0.8837	1	4066	4066		0	0	1				6961	9466	3887	3919	6768	6768					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.08648681640625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.487	1	12.19	11.69	12.69	-0.29721								0	0	0	0.8837	1	4083	4083		0	0	1				6962	9466	3887	3919	6769	6769					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0863342285156	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.969	1	12.672	12.172	13.172	-0.29721								0	0	0	0.8837	1	4244	4244		0	0	1				6963	9466	3887	3919	6770	6770					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0866394042969	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.646	1	13.342	12.842	13.842	-0.30453								0	0	0	0.8837	1	4465	4465		0	0	1				6964	9466	3887	3919	6771	6771					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0863037109375	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.514	1	63.391	62.891	63.891	-0.12264								0	0	0	0.8837	1	24618	24618		0	0	1				6965	9466	3887	3919	6772	6772					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.086669921875	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.025	1	63.909	63.409	64.409	-0.11586								0	0	0	0.8837	1	24808	24808		0	0	1				6966	9466	3887	3919	6773	6773					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	396.0865478515625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.821	1	64.709	64.209	65.209	-0.11256								0	0	0	0.8837	1	25055	25055		0	0	1				6967	9466	3887	3919	6774	6774					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0866394042969	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.2937	1	0.35461	-0.14539	0.85461	0.060905								0	0	0	0.8837	1	104	104		0	0	1				6968	9466	3887	3919	6775	6775					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0865173339844	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.86904	1	0.92995	0.42995	1.4299	0.060905								0	0	0	0.8837	1	279	279		0	0	1				6969	9466	3887	3919	6776	6776					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0865478515625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.459	1	1.52	1.02	2.02	0.060905								0	0	0	0.8837	1	453	453		0	0	1				6970	9466	3887	3919	6777	6777					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0864562988281	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3826	1	2.4379	1.9379	2.9379	0.055284								0	0	0	0.8837	1	728	728		0	0	1				6971	9466	3887	3919	6778	6778					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0863952636719	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.894	1	2.9393	2.4393	3.4393	0.045237								0	0	0	0.8837	1	880	880		0	0	1				6972	9466	3887	3919	6779	6779					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.08612060546875	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9035	1	3.9399	3.4399	4.4399	0.036387								0	0	0	0.8837	1	1181	1181		0	0	1				6973	9466	3887	3919	6780	6780					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0865783691406	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2026	1	5.2219	4.7219	5.7219	0.019389								0	0	0	0.8837	1	1569	1569		0	0	1				6974	9466	3887	3919	6781	6781					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.08624267578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2225	1	6.2368	5.7368	6.7368	0.01438								0	0	0	0.8837	1	1880	1880		0	0	1				6975	9466	3887	3919	6782	6782					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0865478515625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.487	1	9.5131	9.0131	10.013	0.026101								0	0	0	0.8837	1	2871	2871		0	0	1				6976	9466	3887	3919	6783	6783					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0865783691406	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.411	1	10.451	9.9514	10.951	0.039975								0	0	0	0.8837	1	3154	3154		0	0	1				6977	9466	3887	3919	6784	6784					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	395.6515197753906	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.828	1	10.868	10.368	11.368	0.039975								0	0	0	0.8837	1	3297	3297		0	0	1				6978	9466	3887	3919	6785	6785					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	395.98583984375	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.99	1	11.038	10.538	11.538	0.04739								0	0	0	0.8837	1	3356	3356		0	0	1				6979	9466	3887	3919	6786	6786					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0865173339844	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.026	1	11.074	10.574	11.574	0.04739								0	0	0	0.8837	1	3367	3367		0	0	1				6980	9466	3887	3919	6787	6787					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.08660888671875	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.622	1	11.677	11.177	12.177	0.055045								0	0	0	0.8837	1	3573	3573		0	0	1				6981	9466	3887	3919	6788	6788					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0433044433594	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.648	1	12.71	12.21	13.21	0.06246								0	0	0	0.8837	1	3961	3961		0	0	1				6982	9466	3887	3919	6789	6789					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.08642578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.303	1	13.373	12.873	13.873	0.069158								0	0	0	0.8837	1	4210	4210		0	0	1				6983	9466	3887	3919	6790	6790					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0862731933594	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.382	1	63.168	62.668	63.668	-0.21454								0	0	0	0.8837	1	24194	24194		0	0	1				6984	9466	3887	3919	6791	6791					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S3	3	396.0867919921875	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.036	1	63.83	63.33	64.33	-0.20569								0	0	0	0.8837	1	24392	24392		0	0	1				6985	9466	3887	3919	6792	6792					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.0865478515625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.4016	1	1.1371	0.63705	1.6371	-0.26456								0	0	0	0.8837	1	431	431		0	0	1				6986	9466	3887	3919	6793	6793					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.0867614746094	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9613	1	1.6967	1.1967	2.1967	-0.26456								0	0	0	0.8837	1	600	600		0	0	1				6987	9466	3887	3919	6794	6794					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08636474609375	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5339	1	2.2693	1.7693	2.7693	-0.26456								0	0	0	0.8837	1	770	770		0	0	1				6988	9466	3887	3919	6795	6795					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.0869140625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1741	1	2.9096	2.4096	3.4096	-0.26456								0	0	0	0.8837	1	973	973		0	0	1				6989	9466	3887	3919	6796	6796					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08624267578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6927	1	3.4281	2.9281	3.9281	-0.26456								0	0	0	0.8837	1	1129	1129		0	0	1				6990	9466	3887	3919	6797	6797					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08642578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.131	1	4.8669	4.3669	5.3669	-0.26414								0	0	0	0.8837	1	1568	1568		0	0	1				6991	9466	3887	3919	6798	6798					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08642578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7946	1	5.5331	5.0331	6.0331	-0.26151								0	0	0	0.8837	1	1770	1770		0	0	1				6992	9466	3887	3919	6799	6799					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08612060546875	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.184	1	9.9851	9.4851	10.485	-0.1993								0	0	0	0.8837	1	3121	3121		0	0	1				6993	9466	3887	3919	6800	6800					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08673095703125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.928	1	10.738	10.238	11.238	-0.18973								0	0	0	0.8837	1	3366	3366		0	0	1				6994	9466	3887	3919	6801	6801					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.0867004394531	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.483	1	11.302	10.802	11.802	-0.18135								0	0	0	0.8837	1	3548	3548		0	0	1				6995	9466	3887	3919	6802	6802					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.0861511230469	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.144	1	11.969	11.469	12.469	-0.17441								0	0	0	0.8837	1	3758	3758		0	0	1				6996	9466	3887	3919	6803	6803					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08660888671875	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.874	1	12.709	12.209	13.209	-0.16496								0	0	0	0.8837	1	4013	4013		0	0	1				6997	9466	3887	3919	6804	6804					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08636474609375	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.603	1	13.441	12.941	13.941	-0.16233								0	0	0	0.8837	1	4274	4274		0	0	1				6998	9466	3887	3919	6805	6805					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08642578125	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.503	1	63.264	62.764	63.764	-0.2389								0	0	0	0.8837	1	23944	23944		0	0	1				6999	9466	3887	3919	6806	6806					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.08648681640625	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.228	1	63.994	63.494	64.494	-0.23411								0	0	0	0.8837	1	24185	24185		0	0	1				7000	9466	3887	3919	6807	6807					-0.24581483963413575
EACCCCCG	8	Unmodified	_EACCCCCG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S4	4	396.0863952636719	2	396.086105	790.157658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.756	1	64.524	64.024	65.024	-0.2319								0	0	0	0.8837	1	24350	24350		0	0	1				7001	9466	3887	3919	6808	6808					-0.24581483963413575
EACNDDERD	9	Unmodified	_EACNDDERD_					0	0	0			REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	MSMS	HCT116MG_D190212_S4	4	533.6908569335938	2	533.690735	1065.36692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.186	1	34.8	34.3	35.3	-0.38606								0	0	0	0.76818	1	12877	12877		7.2892	2.5332	1		+		7002	16301	3888	3920	6809	6809					-0.16315206608919652
EADGLRQRRP	10	Unmodified	_EADGLRQRRP_					0	0	0		APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant;nc|ENSG00000101474|Q9HDC9-2|APMAP;APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant;ENSG00000101474|ENST00000217456|APMAP	APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant	APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	599.8273315429688	2	599.325985	1196.63742	0.60934	0.0003652	-0.44749	-0.00026819	0.16185	9.7003E-05	599.3257940141305	14.848	0.20811	14.848	14.702	14.91	0					6	3	2	0	0	0	0.69965	1	4898	4898		20.415	0	1	2432000			7003	160	3889	3921	6810	6810					0.04696354229326971
EADGLRQRRP	10	Unmodified	_EADGLRQRRP_					0	0	0		APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant;nc|ENSG00000101474|Q9HDC9-2|APMAP;APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant;ENSG00000101474|ENST00000217456|APMAP	APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant	APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	599.3263549804688	2	599.325985	1196.63742	0.54418	0.00032614	-0.084217	-5.0473E-05	0.45997	0.00027567	599.3259114100964	14.538	0.45077	14.218	14.002	14.453	-0.31952					25	8	4	0	0	0	0.65928	1	4731	4731		23.79	0	1	25721000			7004	160	3889	3921	6811	6811					0.04696354229326971
EADGRCCCPS	10	Unmodified	_EADGRCCCPS_					0	0	0		ENST00000564774.5_1_16:84213598-84214368:-|nuORF	ENST00000564774.5_1_16:84213598-84214368:-|nuORF	ENST00000564774.5_1_16:84213598-84214368:-|nuORF	MSMS	HCT116MG_D190212_S2	2	521.074462890625	2	520.683344	1039.35214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.707	1	49.543	49.043	50.043	-0.16369								0	0	0	0.95648	1	19032	19032		3.2813	0.70383	1				7005	8850	3890	3922	6812	6812					-0.16596693282281194
EADHNHYGY	9	Unmodified	_EADHNHYGY_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MULTI-MSMS	HCT116MG_D190212_S1	1	553.2212524414062	2	553.22032	1104.42609	0.63122	0.0003492	0.26818	0.00014836	0.8994	0.00049757	553.2205904381084	20.566	0.20834	20.566	20.435	20.644	0					6	3	2	0	0	0	0.0201	1	7212	7212		96.367	73.218	1	7398800			7006	3738	3891	3923	6813	6813					-0.12194942532414643
EADHNHYGY	9	Unmodified	_EADHNHYGY_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2207641601562	2	553.22032	1104.42609	0.30626	0.00016943	0.36423	0.0002015	0.67049	0.00037093	553.2204749042623	21.164	0.3107	20.781	20.651	20.961	-0.38288					11	5	3	0	0	0	0.012596	1	7445	7445		106.94	83.792	1	21592000			7007	3738	3891	3923	6814	6814					-0.12194942532414643
EADKRHQFNVY	11	Unmodified	_EADKRHQFNVY_					0	0	0			REV__PABPC3|p.T62R|1|0.31|ENSG00000151846|chr13:25096383-25096383|C/G|missense_variant	REV__PABPC3|p.T62R|1|0.31|ENSG00000151846|chr13:25096383-25096383|C/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	703.8453979492188	2	703.844207	1405.67386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.037	1	17.037	16.537	17.537	0								0	0	0	0.9465	1	5773	5773		8.1555	2.4237	1		+		7008	17380	3892	3924	6815	6815					-0.012748136646223429
EADLGPQK	8	Unmodified	_EADLGPQK_					0	0	0		ENST00000394921.8_1_7:75157001-75157100:-|nuORF	ENST00000394921.8_1_7:75157001-75157100:-|nuORF	ENST00000394921.8_1_7:75157001-75157100:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	429.2218322753906	2	429.2218	856.429047	0.080725	3.4649E-05	-0.011635	-4.9939E-06	0.06909	2.9655E-05	429.2217200384653	18.219	0.26052	18.295	18.153	18.413	0.076334					7	4	2	0	0	0	0.71077	1	6195	6195		21.747	4.8044	1	2287500			7009	7638	3893	3925	6816	6816					-0.004910674076086252
EADPGEQAKL	10	Unmodified	_EADPGEQAKL_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S3	3	529.26220703125	2	529.261653	1056.50875	0.55797	0.00029531	-0.21604	-0.00011434	0.34194	0.00018097	529.2615844267872	26.326	0.88594	26.177	25.629	26.515	-0.14924					18	16	2	0	0	0	0.76634	1	9425	9425		14.838	0.93222	1	6357200	+		7010	12349	3894	3926	6817	6817					-0.01724045524269968
EADPKEYQP	9	Unmodified	_EADPKEYQP_					0	0	0			REV__nc|ENSG00000047644|Q9ULE0-2|WWC3	REV__nc|ENSG00000047644|Q9ULE0-2|WWC3	MULTI-SECPEP	HCT116MG_D190212_S3	3	538.7728881835938	2	538.748379	1075.4822	0.4799	0.00025854	0.34091	0.00018367	0.82081	0.00044221	539.2502908522634	33.62	0.25945	33.33	33.148	33.408	-0.29013					6	4	2	0	0	0	0.23771	1	12276	12276		10.074	1.3285	1	2591900	+		7011	10603	3895	3927	6818	6818					-0.05251734415628562
EADSESCPV	9	Unmodified	_EADSESCPV_					0	0	0		BACH2|p.S597L|1|0.22|ENSG00000112182|chr6:89950316-89950316|G/A|missense_variant;ENSG00000112182|ENST00000257749|BACH2	BACH2|p.S597L|1|0.22|ENSG00000112182|chr6:89950316-89950316|G/A|missense_variant	BACH2|p.S597L|1|0.22|ENSG00000112182|chr6:89950316-89950316|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	468.24395751953125	2	468.68439	935.354227	0.019413	9.0984E-06	0.74089	0.00034724	0.7603	0.00035634	468.68452423711335	30.136	0.26004	29.779	29.649	29.909	-0.3571					6	4	2	0	0	0	0.25445	1	10957	10957		2.0598	2.0598	1	2846300			7012	248	3896	3928	6819	6819					-0.11603618001151972
EADYHEFL	8	Unmodified	_EADYHEFL_					0	0	0		DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;DNAH12|p.F1712Lfs*4|1|0.34|ENSG00000174844|chr3:57428681-57428681|A/-|frameshift_variant;nc|ENSG00000174844|Q6ZR08|DNAH12	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	512.3009033203125	2	512.224539	1022.43453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.438	1	23.438	22.938	23.938	0								0	0	0	0.8837	1	8347	8347		8.5933	0.68312	1				7013	699	3897	3929	6820	6820					-0.07579388615806693
EAEAEAVLG	9	Unmodified	_EAEAEAVLG_					0	0	0			REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF	REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	888.433837890625	1	888.430903	887.423627	0.71943	0.00063916	1.8492	0.0016429	2.5686	0.002282	888.4327387599452	28.148	0.26081	27.942	27.759	28.02	-0.20593					6	4	2	0	0	0	0.065014	1	10179	10179		67.344	0	1	4091300	+		7014	16636	3898	3930	6821	6821					-0.02458790990090165
EAEAEAVLG	9	Unmodified	_EAEAEAVLG_					0	0	0			REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF	REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	888.4304809570312	1	888.430903	887.423627	0.73466	0.00065269	1.4543	0.0012921	2.189	0.0019448	888.433023258061	28.249	0.20825	27.918	27.804	28.012	-0.33138					5	3	2	0	0	0	0.065014	1	10174	10174		67.344	0	1	2061600	+		7015	16636	3898	3930	6822	6822					-0.02458790990090165
EAEAEAVLG	9	Unmodified	_EAEAEAVLG_					0	0	0			REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF	REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	888.430903	887.423627	0.71943	0.00063916	1.8492	0.0016429	2.5686	0.002282	888.4327387599452	28.148	0.26081	27.942	27.759	28.02	-0.20593	0.011968	3.679E-05	NaN	67.344	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4091300	+		7016	16636	3898	3930							-0.02458790990090165
EAEAEAVLG	9	Unmodified	_EAEAEAVLG_					0	0	0			REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF	REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	888.430903	887.423627	0.73466	0.00065269	1.4543	0.0012921	2.189	0.0019448	888.433023258061	28.249	0.20825	27.918	27.804	28.012	-0.33138	-0.011968	-0.00031399	NaN	67.344	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2061600	+		7017	16636	3898	3930							-0.02458790990090165
EAEAGSVVRVP	11	Unmodified	_EAEAGSVVRVP_					0	0	0			REV__nc|ENSG00000124006|O75147-1|OBSL1	REV__nc|ENSG00000124006|O75147-1|OBSL1	MULTI-MSMS	HCT116MG_D190212_S3	3	557.2933959960938	2	557.29857	1112.58259	0.43743	0.00024378	-4.0835	-0.0022757	-3.6461	-0.002032	557.2950481198918	32.467	0.36472	32.189	31.994	32.358	-0.2784					9	6	2	0	0	0	0.54124	1	11908	11908		41.956	7.5538	1	3741200	+		7018	11774	3899	3931	6823	6823					0.030799226380622713
EAEAGSVVRVP	11	Unmodified	_EAEAGSVVRVP_					0	0	0			REV__nc|ENSG00000124006|O75147-1|OBSL1	REV__nc|ENSG00000124006|O75147-1|OBSL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	557.29857	1112.58259	0.43743	0.00024378	-4.0835	-0.0022757	-3.6461	-0.002032	557.2950481198918	32.467	0.36472	32.189	31.994	32.358	-0.2784	-0.049003	-0.0038967	NaN	41.956	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3741200	+		7019	11774	3899	3931							0.030799226380622713
EAEAGSVVRVP	11	Unmodified	_EAEAGSVVRVP_					0	0	0			REV__nc|ENSG00000124006|O75147-1|OBSL1	REV__nc|ENSG00000124006|O75147-1|OBSL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	557.29857	1112.58259	0.33336	0.00018578	-0.29967	-0.000167	0.033693	1.8777E-05	557.2982524644082	32.666	0.25964	32.287	32.157	32.416	-0.37924	0.049003	0.00032078	NaN	41.956	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2855900	+		7020	11774	3899	3931							0.030799226380622713
EAEALEGPVS	10	Unmodified	_EAEALEGPVS_					0	0	0		ENSG00000157211|ENST00000530059|CDCP2	ENSG00000157211|ENST00000530059|CDCP2	ENSG00000157211|ENST00000530059|CDCP2	MSMS	HCT116MG_D190212_S4	4	501.24395751953125	2	501.242929	1000.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.637	1	19.444	18.944	19.944	-0.19367								0	0	0	0.90475	1	6673	6673		14.838	0	1				7021	4321	3900	3932	6824	6824					-0.02891136789878601
EAEALGPD	8	Unmodified	_EAEALGPD_					0	0	0		ENST00000608721.1_1_6:161413012-161413321:-|nuORF	ENST00000608721.1_1_6:161413012-161413321:-|nuORF	ENST00000608721.1_1_6:161413012-161413321:-|nuORF	MSMS	HCT116MG_D190212_S3	3	401.1838684082031	2	401.184883	800.355213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.256	1	17.341	16.841	17.841	0.084467								0	0	0	0.85589	1	5785	5785		18.135	2.3668	1				7022	9129	3901	3933	6825	6825					-0.05295035569940865
EAEAVAAA	8	Unmodified	_EAEAVAAA_					0	0	0		nc|ENSG00000175764|Q8NHH1-2|TTLL11;ENSG00000175764|ENST00000321582|TTLL11	nc|ENSG00000175764|Q8NHH1-2|TTLL11	nc|ENSG00000175764|Q8NHH1-2|TTLL11	MULTI-MSMS	HCT116MG_D190212_S3	3	731.3576049804688	1	731.35701	730.349734	0.45545	0.0003331	0.59314	0.0004338	1.0486	0.00076689	731.3574249437834	21.596	0.3687	21.615	21.483	21.851	0.018446					9	6	2	0	0	0	0.13911	1	7542	7542		86.121	0	1	9664400			7023	5394	3902	3934	6826	6826					-0.026227143617575166
EAEAVHTNV	9	Unmodified	_EAEAVHTNV_					0	0	0			REV__ENSG00000178233|ENST00000451188|TMEM151B	REV__ENSG00000178233|ENST00000451188|TMEM151B	MSMS	HCT116MG_D190212_S4	4	485.23583984375	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.298	1	16.134	15.634	16.634	-0.16364								0	0	0	0.64498	1	5324	5324		21.747	4.8044	1		+		7024	13598	3903	3935	6827	6827					-0.029165838672270183
EAEDSDRDV	9	Unmodified	_EAEDSDRDV_					0	0	0		ENST00000471408.5_1_12:6649651-6659338:-|nuORF;nc|ENSG00000010295|Q0D2I5-2|IFFO1;nc|ENSG00000010295|Q0D2I5-6|IFFO1;ENST00000488007.5_1_12:6649651-6660148:-|nuORF;nc|ENSG00000010295|Q0D2I5|IFFO1;nc|ENSG00000010295|Q0D2I5-7|IFFO1;nc|ENSG00000010295|Q0D2I5-4|IFFO1;nc|ENSG00000010295|Q0D2I5-5|IFFO1;ENSG00000010295|ENST00000619571|IFFO1	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2153930664062	2	518.2149	1034.41525	0.24158	0.00012519	0.51408	0.00026641	0.75566	0.00039159	518.2152829360318	36.956	0.31218	36.655	36.509	36.821	-0.30113					14	5	4	0	0	0	0.19461	2	13667	13667;13674		41.84	4.0704	1	26905000			7025	8154	3904	3936	6828;6829	6828					-0.10058389697383063
EAEDSDRDV	9	Unmodified	_EAEDSDRDV_					0	0	0		ENST00000471408.5_1_12:6649651-6659338:-|nuORF;nc|ENSG00000010295|Q0D2I5-2|IFFO1;nc|ENSG00000010295|Q0D2I5-6|IFFO1;ENST00000488007.5_1_12:6649651-6660148:-|nuORF;nc|ENSG00000010295|Q0D2I5|IFFO1;nc|ENSG00000010295|Q0D2I5-7|IFFO1;nc|ENSG00000010295|Q0D2I5-4|IFFO1;nc|ENSG00000010295|Q0D2I5-5|IFFO1;ENSG00000010295|ENST00000619571|IFFO1	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1035.4232177734375	1	1035.42252	1034.41525	0.55222	0.00057179	0.93361	0.00096669	1.4858	0.0015385	1035.4232413289235	37.091	0.17894	36.706	36.591	36.77	-0.38486					5	3	2	0	0	0	0.14171	1	13619	13619		49.933	17.628	1	2995600			7026	8154	3904	3936	6830	6830					-0.10058389697383063
EAEDSDRDV	9	Unmodified	_EAEDSDRDV_					0	0	0		ENST00000471408.5_1_12:6649651-6659338:-|nuORF;nc|ENSG00000010295|Q0D2I5-2|IFFO1;nc|ENSG00000010295|Q0D2I5-6|IFFO1;ENST00000488007.5_1_12:6649651-6660148:-|nuORF;nc|ENSG00000010295|Q0D2I5|IFFO1;nc|ENSG00000010295|Q0D2I5-7|IFFO1;nc|ENSG00000010295|Q0D2I5-4|IFFO1;nc|ENSG00000010295|Q0D2I5-5|IFFO1;ENSG00000010295|ENST00000619571|IFFO1	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	518.2149	1034.41525	0.22793	0.00011812	0.745	0.00038607	0.97293	0.00050419	518.2152675412029	37.091	0.38623	36.706	36.539	36.925	-0.38486	0.043039	-1.9474E-05	NaN	41.84	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23683000			7027	8154	3904	3936							-0.10058389697383063
EAEECQDEEN	10	Unmodified	_EAEECQDEEN_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MSMS	HCT116MG_D190212_S1	1	598.08740234375	2	598.206415	1194.39828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.855	1	20.855	20.355	21.355	0								0	0	0	0.95507	1	7311	7311		3.5965	1.9439	1			+	7028	575	3905	3937	6831	6831					-0.19114678365485815
EAEEQCLSPD	10	Unmodified	_EAEEQCLSPD_					0	0	0		MAP1A|p.R983Q|1|0.41|ENSG00000166963|chr15:43524421-43524421|G/A|missense_variant	MAP1A|p.R983Q|1|0.41|ENSG00000166963|chr15:43524421-43524421|G/A|missense_variant	MAP1A|p.R983Q|1|0.41|ENSG00000166963|chr15:43524421-43524421|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	560.7269897460938	2	560.726786	1119.43902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.676	1	29.439	28.939	29.939	-0.23655								0	0	0	0.91279	1	10790	10790		13.042	0.51092	1				7029	9315	3906	3938	6832	6832					-0.11592292255204484
EAEEWEAESVL	11	Unmodified	_EAEEWEAESVL_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	MSMS	HCT116MG_D190212_S2	2	646.2874755859375	2	646.288065	1290.56158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33	1	32.789	32.289	33.289	-0.21135								0	0	0	0.9387	1	12230	12230		12.241	3.4953	1				7030	3111	3907	3939	6833	6833					-0.07208132252139876
EAEGTCFGP	9	Unmodified	_EAEGTCFGP_					0	0	0			REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF	REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	910.36181640625	1	910.361109	909.353833	0.69621	0.00063381	-0.12276	-0.00011175	0.57346	0.00052205	910.3608884084653	43.512	0.24925	43.138	43.018	43.267	-0.37433					9	5	2	0	0	0	0.043314	1	16002	16002		77.984	3.588	1	6610200	+		7031	16191	3908	3940	6834	6834					-0.10446992930349097
EAEHISNY	8	Unmodified	_EAEHISNY_					0	0	0		nc|ENSG00000185033|Q9NPR2-2|SEMA4B;SEMA4B|p.S797Vfs*6|1|0.32|ENSG00000185033|chr15:90228507-90228508|-/C|frameshift_variant;ENSG00000185033|ENST00000411539|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	MULTI-SECPEP	HCT116MG_D190212_S2	2	481.2693176269531	2	481.714339	961.414125	0.20785	0.00010013	-0.060804	-2.929E-05	0.14705	7.0836E-05	481.7141481712934	23.708	0.20795	23.325	23.195	23.403	-0.38324					5	3	2	0	0	0	0.28869	1	8484	8484		18.135	3.5533	1	7948100			7032	5800	3909	3941	6835	6835					-0.06812559275613239
EAEKLGPPP	9	Unmodified	_EAEKLGPPP_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MSMS	HCT116MG_D190212_S3	3	469.25164794921875	2	469.2531	936.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.186	1	30.925	30.425	31.425	-0.26071								0	0	0	0.76641	1	11384	11384		13.508	0	1				7033	1349	3910	3942	6836	6836					0.020860786605680914
EAELEHLQQ	9	Unmodified	_EAELEHLQQ_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MSMS	HCT116MG_D190212_S3	3	548.7671508789062	2	548.767103	1095.51965	0.34045	0.00018683	0.29422	0.00016146	0.63466	0.00034828	548.7671743197301	28.252	0.62548	28.046	27.551	28.177	-0.20593					18	11	2	0	0	0	0.24895	1	10139	10139		36.127	8.4982	1	11874000			7034	3281	3911	3943	6837	6837					-0.024286431500058825
EAELEHLQQ	9	Unmodified	_EAELEHLQQ_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MSMS	HCT116MG_D190212_S4	4	548.7675170898438	2	548.767103	1095.51965	0.53351	0.00029277	-0.012327	-6.7648E-06	0.52118	0.00028601	548.7669734102359	28.109	0.52035	27.778	27.648	28.168	-0.33138					12	9	2	0	0	0	0.2853	1	10111	10111		32.305	2.4649	1	3138700			7035	3281	3911	3943	6838	6838					-0.024286431500058825
EAELEPRLL	9	Unmodified	_EAELEPRLL_					0	0	0		ENST00000557266.5_1_15:91500194-91504996:+|nuORF;ENSG00000166965|ENST00000394258|RCCD1;ENST00000555737.5_1_15:91500194-91503934:+|nuORF	ENST00000557266.5_1_15:91500194-91504996:+|nuORF	ENST00000557266.5_1_15:91500194-91504996:+|nuORF	MSMS	HCT116MG_D190212_S4	4	357.20166015625	3	357.201118	1068.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.794	1	34.408	33.908	34.908	-0.38606								0	0	0	0.7689	1	12719	12719		2.7352	0	1				7036	4895	3912	3944	6839	6839					0.04997708269161194
EAELQYSLN	9	Unmodified	_EAELQYSLN_					0	0	0			REV__ENST00000552612.5_1_12:32974244-32977059:-|nuORF	REV__ENST00000552612.5_1_12:32974244-32977059:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.7925415039062	2	533.756204	1065.49785	0.3545	0.00018922	0.23673	0.00012635	0.59123	0.00031557	533.756159111562	35.431	0.1958	35.288	35.19	35.386	-0.14245					5	3	2	0	0	0	0.25656	1	13246	13246		13.906	0	1	18452000	+		7037	10656	3913	3945	6840	6840					-0.03227447898552782
EAEMEEIYEFA	11	Unmodified	_EAEMEEIYEFA_					0	0	0		SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant;SLX4|p.P1414Hfs*36|1|0.43|ENSG00000188827|chr16:3589397-3589397|G/-|frameshift_variant;ENSG00000188827|ENST00000294008|SLX4;nc|ENSG00000188827|Q8IY92-2|SLX4	SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant	SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	680.8023681640625	2	680.784301	1359.55405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.301	1	40.301	39.801	40.801	0								0	0	0	0.95113	1	15144	15144		5.7319	0	1				7038	6005	3914	3946	6841	6841					-0.11134607844087441
EAENKHKP	8	Unmodified	_EAENKHKP_					0	0	0		ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	ENST00000590558.5_1_19:5692045-5712033:-|nuORF	MSMS	HCT116MG_D190212_S2	2	476.7458190917969	2	476.745973	951.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.098	1	10.816	10.316	11.316	-0.28186								0	0	0	0.8837	1	3557	3557		8.5933	0	1				7039	6062	3915	3947	6842	6842					-0.000285737677245379
EAEPGAGRASP	11	Unmodified	_EAEPGAGRASP_					0	0	0		nc|ENSG00000108509|O94983-6|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	MSMS	HCT116MG_D190212_S2	2	521.7368774414062	2	521.25162	1040.48869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.156	1	18.786	18.286	19.286	-0.3695								0	0	0	0.8876	1	6626	6626		21.59	0.053175	1				7040	9419	3916	3948	6843	6843					-0.029937964642158477
EAEPHPLWEY	10	Unmodified	_EAEPHPLWEY_					0	0	0		nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;nc|ENSG00000132600|Q9NVM4-2|PRMT7;ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF	nc|ENSG00000132600|Q9NVM4-3|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	MULTI-MSMS	HCT116MG_D190212_S1	1	635.790771484375	2	635.790578	1269.5666	0.61922	0.00039369	-0.40969	-0.00026048	0.20953	0.00013322	635.7904311579404	49.093	0.51778	49.093	48.768	49.286	0					16	9	2	0	0	0	0.033024	1	18672	18672		99.799	79.384	1	12070000			7041	3193	3917	3949	6844	6844					-0.057397835988467705
EAEPHPLWEY	10	Unmodified	_EAEPHPLWEY_					0	0	0		nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;nc|ENSG00000132600|Q9NVM4-2|PRMT7;ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF	nc|ENSG00000132600|Q9NVM4-3|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	MULTI-MSMS	HCT116MG_D190212_S2	2	635.790771484375	2	635.790578	1269.5666	0.39929	0.00025387	0.22647	0.00014398	0.62576	0.00039785	635.7907053854746	49.114	0.65698	48.96	48.682	49.339	-0.15405					20	12	2	0	0	0	0.018611	2	18794	18794;18886		123.45	107.3	1	65946000			7042	3193	3917	3949	6845;6846	6845					-0.057397835988467705
EAEPHPLWEY	10	Unmodified	_EAEPHPLWEY_					0	0	0		nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;nc|ENSG00000132600|Q9NVM4-2|PRMT7;ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF	nc|ENSG00000132600|Q9NVM4-3|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	MSMS	HCT116MG_D190212_S3	3	635.790771484375	2	635.790578	1269.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.453	1	49.137	48.637	49.637	-0.31596								0	0	0	0.45592	1	18623	18623		49.933	30.676	1				7043	3193	3917	3949	6847	6847					-0.057397835988467705
EAEQRELDPC	10	Unmodified	_EAEQRELDPC_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MSMS	HCT116MG_D190212_S2	2	594.78955078125	2	595.261327	1188.5081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.108	1	24.733	24.233	25.233	-0.37521								0	0	0	0.94107	1	9028	9028		6.7232	0.51738	1		+		7044	11646	3918	3950	6848	6848					-0.07861208235635786
EAERPEQL	8	Unmodified	_EAERPEQL_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	MULTI-MSMS	HCT116MG_D190212_S1	1	487.2855224609375	2	486.243264	970.471974	0.33727	0.000164	0.0077308	3.7591E-06	0.345	0.00016776	486.2431557907752	14.832	0.26016	14.832	14.702	14.962	0					9	4	3	0	0	0	0.81821	1	4910	4910		9.3474	1.4373	1	9888000			7045	9633	3919	3951	6849	6849					-0.01444297350190027
EAESASETS	9	Unmodified	_EAESASETS_					0	0	0			REV__nc|ENSG00000183145|P57055-2|RIPPLY3	REV__nc|ENSG00000183145|P57055-2|RIPPLY3	MULTI-MSMS	HCT116MG_D190212_S2	2	910.3612670898438	1	910.363612	909.356335	0.3405	0.00030998	-1.6239	-0.0014783	-1.2834	-0.0011684	910.3620039720021	43.144	0.61754	43.071	42.789	43.407	-0.073376					13	11	2	0	0	0	0.027492	1	16360	16360		88.904	10.919	1	22538000	+		7046	13748	3920	3952	6850	6850					-0.10196865991701998
EAESASETS	9	Unmodified	_EAESASETS_					0	0	0			REV__nc|ENSG00000183145|P57055-2|RIPPLY3	REV__nc|ENSG00000183145|P57055-2|RIPPLY3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	910.363612	909.356335	0.3405	0.00030998	-1.6239	-0.0014783	-1.2834	-0.0011684	910.3620039720021	43.144	0.61754	43.071	42.789	43.407	-0.073376	-0.029837	0.00096478	NaN	88.904	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22538000	+		7047	13748	3920	3952							-0.10196865991701998
EAESASETS	9	Unmodified	_EAESASETS_					0	0	0			REV__nc|ENSG00000183145|P57055-2|RIPPLY3	REV__nc|ENSG00000183145|P57055-2|RIPPLY3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	910.363612	909.356335	0.69621	0.00063381	-2.8716	-0.0026142	-2.1754	-0.0019804	910.3608884084653	43.512	0.24925	43.138	43.018	43.267	-0.37433	0.036674	-0.00017105	NaN	88.904	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6610200	+		7048	13748	3920	3952							-0.10196865991701998
EAESGPAAP	9	Unmodified	_EAESGPAAP_					0	0	0		ENSG00000129864|ENST00000250825|VCY;ENSG00000129862|ENST00000250823|VCY1B;ENSG00000169059|ENST00000381089|VCX3A;nc|ENSG00000205642|Q9H321-2|VCX3B;ENSG00000205642|ENST00000381032|VCX3B	ENSG00000129864|ENST00000250825|VCY	ENSG00000129864|ENST00000250825|VCY	MULTI-MSMS	HCT116MG_D190212_S3	3	828.3736572265625	1	828.373389	827.366112	0.70805	0.00058653	0.97842	0.0008105	1.6865	0.001397	828.3738544180055	20.74	0.36422	20.775	20.662	21.027	0.034473					10	6	2	0	0	0	0.043314	1	7207	7207		77.984	7.2688	1	1938500			7049	3045	3921	3953	6851	6851					-0.05447633195672097
EAESPDGP	8	Unmodified	_EAESPDGP_					0	0	0			REV__nc|ENSG00000167302|Q96N21-2|TEPSIN	REV__nc|ENSG00000167302|Q96N21-2|TEPSIN	MSMS	HCT116MG_D190212_S3	3	401.1667175292969	2	401.16669	800.318828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.565	1	43.259	42.759	43.759	-0.30616								0	0	0	0.8837	1	16260	16260		14.582	0	1		+		7050	13143	3922	3954	6852	6852					-0.08931912466653102
EAESPVAPP	9	Unmodified	_EAESPVAPP_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	HCT116MG_D190212_S4	4	448.7274169921875	2	448.721633	895.428712	0.26608	0.00011939	-0.95752	-0.00042966	-0.69145	-0.00031027	448.72108548936677	34.53	1.1303	34.145	33.464	34.595	-0.38558					33	21	2	0	0	0	0.49914	1	12583	12583		16.942	0	1	5238700	+		7051	14420	3923	3955	6853	6853					-0.023184871274793295
EAEYMSELLEP	11	Unmodified	_EAEYMSELLEP_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	437.5325012207031	3	437.532205	1309.57478	0.10527	4.606E-05	0.41539	0.00018174	0.52066	0.0002278	437.5323373401326	16.178	0.20799	16.263	16.133	16.341	0.085424					5	3	2	0	0	0	0.73261	1	5376	5376		9.7643	1.4778	1	3002400			7052	5348	3924	3956	6854	6854					-0.06762017464393466
EAEYMSELLEP	11	Unmodified	_EAEYMSELLEP_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	437.532205	1309.57478	-0.3457	-0.00015126	1.072	0.00046904	0.72632	0.00031779	437.5326829408206	16.541	0.1487	16.374	16.303	16.452	-0.16664	0.055407	0.00034437	NaN	9.7643	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360700			7053	5348	3924	3956							-0.06762017464393466
EAFIMLIL	8	Unmodified	_EAFIMLIL_					0	0	0		tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	tr|U7SGJ5|U7SGJ5_FUSNUFilamentoushaemagglutininFhaB/tRNAnucleaseCdiA-likeTPSdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02209PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	475.2758483886719	2	475.274989	948.535426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.905	1	32.62	32.12	33.12	-0.28511								0	0	0	0.8837	1	12077	12077		9.3474	2.9933	1				7054	18297	3925	3957	6855	6855					0.05909971833352756
EAFYLCVM	8	Unmodified	_EAFYLCVM_					0	0	0			REV__MAST2|p.R613C|1|0.14|ENSG00000086015|chr1:46025733-46025733|C/T|missense_variant	REV__MAST2|p.R613C|1|0.14|ENSG00000086015|chr1:46025733-46025733|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	488.21807861328125	2	488.219357	974.424161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.13	1	33.836	33.336	34.336	-0.29419								0	0	0	0.8837	1	12552	12552		15.768	4.1279	1		+		7055	17008	3926	3958	6856	6856					-0.06407410866256669
EAGAAGLRW	9	Unmodified	_EAGAAGLRW_					0	0	0		nc|ENSG00000133265|Q9NZL4-2|HSPBP1;ENSG00000133265|ENST00000433386|HSPBP1;nc|ENSG00000133265|Q9NZL4-3|HSPBP1	nc|ENSG00000133265|Q9NZL4-2|HSPBP1	nc|ENSG00000133265|Q9NZL4-2|HSPBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	465.74322509765625	2	465.743234	929.471915	0.21423	9.9775E-05	-0.42605	-0.00019843	-0.21183	-9.8657E-05	465.74257186093473	24.347	0.36396	24.263	24.029	24.393	-0.083694					9	6	2	0	0	0	0.49914	1	8672	8672		16.942	3.4344	1	4273100			7056	3236	3927	3959	6857	6857					0.004357474404628192
EAGAAGLRW	9	Unmodified	_EAGAAGLRW_					0	0	0		nc|ENSG00000133265|Q9NZL4-2|HSPBP1;ENSG00000133265|ENST00000433386|HSPBP1;nc|ENSG00000133265|Q9NZL4-3|HSPBP1	nc|ENSG00000133265|Q9NZL4-2|HSPBP1	nc|ENSG00000133265|Q9NZL4-2|HSPBP1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	465.743234	929.471915	0.33499	0.00015602	-0.22351	-0.0001041	0.11148	5.1923E-05	465.74294323741003	24.49	0.209	24.49	24.307	24.516	0	-0.017169	-0.00034447	NaN	16.942	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2371200			7057	3236	3927	3959							0.004357474404628192
EAGAEGFGPCS	11	Unmodified	_EAGAEGFGPCS_					0	0	0			REV__AHDC1|p.G758C|1|0.12|ENSG00000126705|chr1:27549844-27549844|C/A|missense_variant	REV__AHDC1|p.G758C|1|0.12|ENSG00000126705|chr1:27549844-27549844|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7055053710938	2	512.705657	1023.39676	0.079125	4.0568E-05	0.053453	2.7406E-05	0.13258	6.7974E-05	512.7056392240963	29.925	0.30993	29.624	29.495	29.805	-0.30095					9	5	2	0	0	0	0.73536	1	11013	11013		8.7454	0.83525	1	17197000	+		7058	9896	3928	3960	6858	6858					-0.1140022287291913
EAGAETRSP	9	Unmodified	_EAGAETRSP_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-SECPEP	HCT116MG_D190212_S2	2	459.2619323730469	2	459.219788	916.425024	0.078995	3.6276E-05	0.495	0.00022732	0.574	0.00026359	459.21992139909685	16.103	0.67897	15.769	15.428	16.107	-0.33451					22	12	4	0	0	0	0.17767	1	5307	5307		25.399	0	1	25046000			7059	1532	3929	3961	6859	6859					-0.03653156901339116
EAGAGAAPLLW	11	Unmodified	_EAGAGAAPLLW_					0	0	0			REV__ENST00000597643.5_1_19:17441010-17441209:-|nuORF	REV__ENST00000597643.5_1_19:17441010-17441209:-|nuORF	MSMS	HCT116MG_D190212_S4	4	528.28125	2	528.279649	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.244	1	37.861	37.361	38.361	-0.38283								0	0	0	0.93717	1	14009	14009		13.042	1.4022	1		+		7060	16730	3930	3962	6860	6860					0.0196545644323578
EAGAHLSPGR	10	Unmodified	_EAGAHLSPGR_					0	0	0		ENST00000463471.6_1_1:2490234-2490570:+|nuORF;ENST00000442392.6_1_1:2488103-2490570:+|nuORF	ENST00000463471.6_1_1:2490234-2490570:+|nuORF	ENST00000463471.6_1_1:2490234-2490570:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	497.23443603515625	2	497.756872	993.499192	0.2394	0.00011916	0.70166	0.00034926	0.94106	0.00046842	497.7573685837754	14.538	0.29418	14.218	14.002	14.296	-0.31952					7	5	2	0	0	0	0.28496	1	4789	4789		19.257	3.4098	1	1682500			7061	7930	3931	3963	6861	6861					0.002182309808517857
EAGAKQEL	8	Unmodified	_EAGAKQEL_					0	0	0		ENST00000465608.1_1_10:99344477-99358580:+|nuORF;ENST00000370647.8_1_10:99344420-99361731:+|nuORF	ENST00000465608.1_1_10:99344477-99358580:+|nuORF	ENST00000465608.1_1_10:99344477-99358580:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	423.2298278808594	2	423.2218	844.429047	0.056286	2.3822E-05	0.35412	0.00014987	0.41041	0.00017369	423.2218457689504	16.52	0.15622	16.178	16.048	16.204	-0.34183					6	2	3	0	0	0	0.24939	1	5529	5529		38.151	0.17718	1	6667500			7062	7430	3932	3964	6862	6862					0.0006093259237331949
EAGARGAAAAA	11	Unmodified	_EAGARGAAAAA_					0	0	0		ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant;ARID1B|p.K1095Rfs*9|1|0.39|ENSG00000049618|chr6:157181155-157181156|AA/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant	ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	458.2361145019531	2	458.235773	914.456993	0.17624	8.0762E-05	0.45918	0.00021041	0.63542	0.00029117	458.23584374839277	16.884	0.20793	16.543	16.464	16.672	-0.34183					5	3	2	0	0	0	0.52297	1	5739	5739		43.982	11.944	1	7389100			7063	185	3933	3965	6863	6863					-0.0036574442754044867
EAGASGITEAQ	11	Unmodified	_EAGASGITEAQ_					0	0	0		nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;nc|ENSG00000164828|O94901-6|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-5|SUN1	nc|ENSG00000164828|O94901-5|SUN1	MULTI-SECPEP	HCT116MG_D190212_S4	4	517.2320556640625	2	517.24346	1032.47237	0.35992	0.00018616	-0.32223	-0.00016667	0.037683	1.9491E-05	517.2432011706911	25.631	0.5203	25.341	25.099	25.62	-0.29022					24	9	3	0	0	0	0.3506	1	9004	9004		11.495	2.1116	1	20969000			7064	4723	3934	3966	6864	6864					-0.04256922420995579
EAGASWLLNA	10	Unmodified	_EAGASWLLNA_					0	0	0			REV__ENST00000580842.1_1_17:43663677-43664292:+|nuORF	REV__ENST00000580842.1_1_17:43663677-43664292:+|nuORF	MSMS	HCT116MG_D190212_S4	4	516.259765625	2	516.261456	1030.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.859	1	21.641	21.141	22.141	-0.21832								0	0	0	0.68912	1	7571	7571		38.176	0.20157	1		+		7065	16624	3935	3967	6865	6865					-0.005674204534898308
EAGCWRITP	9	Unmodified	_EAGCWRITP_					0	0	0			REV__nc|ENSG00000141551|P48730-2|CSNK1D	REV__nc|ENSG00000141551|P48730-2|CSNK1D	MSMS	HCT116MG_D190212_S4	4	516.7516479492188	2	516.750201	1031.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.43	1	22.203	21.703	22.703	-0.22777								0	0	0	0.76575	1	7802	7802		15.847	0	1		+		7066	12337	3936	3968	6866	6866					-0.02863343122749029
EAGDLQFPD	9	Unmodified	_EAGDLQFPD_					0	0	0			REV__NAALADL2|p.Q63P|1|0.13|ENSG00000177694|chr3:175096934-175096934|A/C|missense_variant	REV__NAALADL2|p.Q63P|1|0.13|ENSG00000177694|chr3:175096934-175096934|A/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	496.7452697753906	2	496.221997	990.429441	0.010607	5.2635E-06	-1.2169	-0.00060386	-1.2063	-0.0005986	496.2211468046486	18.403	0.26132	18.04	17.904	18.165	-0.36325					9	4	3	0	0	0	0.22393	1	6303	6303		19.257	0	1	5352700	+		7067	17058	3937	3969	6867	6867					-0.06615692478430901
EAGEEEGELED	11	Unmodified	_EAGEEEGELED_					0	0	0			REV__LARP6|p.D33G|1|0.46|ENSG00000166173|chr15:70853991-70853991|T/C|missense_variant	REV__LARP6|p.D33G|1|0.46|ENSG00000166173|chr15:70853991-70853991|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	402.826904296875	3	402.826334	1205.45717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.405	1	17.487	16.987	17.987	0.081358								0	0	0	0.9465	1	5845	5845		4.1166	1.4854	1		+		7068	16970	3938	3970	6868	6868					-0.13733878799507693
EAGEGLVTI	9	Unmodified	_EAGEGLVTI_					0	0	0		nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	MULTI-MSMS	HCT116MG_D190212_S2	2	445.2225646972656	2	444.737283	887.460012	-0.14315	-6.3663E-05	-3.6283	-0.0016136	-3.7714	-0.0016773	444.73660759197827	18.762	0.62495	18.399	18.269	18.894	-0.36325					14	11	3	0	0	0	0.60612	1	6651	6651		10.824	2.2306	1	9035600			7069	6600	3939	3971	6869	6869					0.011780859066220728
EAGEQLWAEP	10	Unmodified	_EAGEQLWAEP_					0	0	0			REV__ENST00000269321.11_1_17:79826243-79826699:-|nuORF	REV__ENST00000269321.11_1_17:79826243-79826699:-|nuORF	MSMS	HCT116MG_D190212_S2	2	565.26025390625	2	565.261653	1128.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.437	1	17.088	16.588	17.588	-0.34933								0	0	0	0.84701	1	5934	5934		22.736	0	1		+		7070	14691	3940	3972	6870	6870					-0.050360455242980606
EAGGALQGADP	11	Unmodified	_EAGGALQGADP_					0	0	0		ENST00000333206.9_1_18:32844014-32844098:-|nuORF	ENST00000333206.9_1_18:32844014-32844098:-|nuORF	ENST00000333206.9_1_18:32844014-32844098:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2769470214844	2	493.232896	984.451239	0.29266	0.00014435	-0.43498	-0.00021455	-0.14232	-7.0195E-05	493.23256988189496	26.977	0.31613	26.625	26.45	26.766	-0.35254					10	5	3	0	0	0	0.70662	1	9775	9775		19.362	0.10495	1	11938000			7071	7175	3941	3973	6871	6871					-0.04160887729847218
EAGGHPNFPP	10	Unmodified	_EAGGHPNFPP_					0	0	0			REV__ENSG00000102996|ENST00000219271|MMP15	REV__ENSG00000102996|ENST00000219271|MMP15	MSMS	HCT116MG_D190212_S1	1	511.7381286621094	2	511.738148	1021.46174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.263	1	16.263	15.763	16.763	0								0	0	0	0.93854	1	5461	5461		7.2892	0	1		+		7072	11172	3942	3974	6872	6872					-0.048128602847668844
EAGGLAAK	8	Unmodified	_EAGGLAAK_					0	0	0			REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF	REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	358.7004699707031	2	358.700503	715.386454	-0.16881	-6.0551E-05	0.18784	6.7377E-05	0.019031	6.8263E-06	358.7005063223971	26.372	0.31032	26.01	25.87	26.18	-0.36164					9	5	3	0	0	0	0.6854	1	9563	9563		24.674	6.5389	1	16140000	+		7073	16777	3943	3975	6873	6873					0.017375822548046926
EAGGLAAK	8	Unmodified	_EAGGLAAK_					0	0	0			REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF	REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	359.2009582519531	2	358.700503	715.386454	-0.16881	-6.0551E-05	0.18784	6.7377E-05	0.019031	6.8263E-06	358.7005063223971	26.372	0.31032	26.01	25.87	26.18	-0.36164					9	5	3	0	0	0	0.28869	1	9507	9507		18.135	1.1927	1	16140000	+		7074	16777	3943	3975	6874	6874					0.017375822548046926
EAGGPPREAI	10	Unmodified	_EAGGPPREAI_					0	0	0		ENST00000532667.1_1_17:43481865-43482048:-|nuORF	ENST00000532667.1_1_17:43481865-43482048:-|nuORF	ENST00000532667.1_1_17:43481865-43482048:-|nuORF	MSMS	HCT116MG_D190212_S3	3	498.7593078613281	2	498.759081	995.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.162	1	28.94	28.44	29.44	-0.22195								0	0	0	0.86501	1	10583	10583		20.415	1.0526	1				7075	8637	3944	3976	6875	6875					0.005676954037426185
EAGGSQALPPP	11	Unmodified	_EAGGSQALPPP_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2583618164062	2	512.258914	1022.50327	0.22044	0.00011292	-0.15767	-8.0766E-05	0.06277	3.2154E-05	512.2591139508897	14.834	0.62399	14.918	14.726	15.35	0.083271					15	11	2	0	0	0	0.74191	1	4823	4823		5.7319	0.97584	1	645890			7076	9651	3945	3977	6876	6876					-0.00707724316112035
EAGHLDEPLT	10	Unmodified	_EAGHLDEPLT_					0	0	0		ENST00000399824.6_2_22:30757952-30758048:+|nuORF	ENST00000399824.6_2_22:30757952-30758048:+|nuORF	ENST00000399824.6_2_22:30757952-30758048:+|nuORF	MSMS	HCT116MG_D190212_S4	4	541.2619018554688	2	541.261653	1080.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.91	1	37.527	37.027	38.027	-0.38283								0	0	0	0.92607	1	13881	13881		10.074	0	1				7077	7693	3946	3978	6877	6877					-0.028280455243020697
EAGHWCGLSA	10	Unmodified	_EAGHWCGLSA_					0	0	0			REV__nc|ENSG00000105136|Q96HQ0-6|ZNF419	REV__nc|ENSG00000105136|Q96HQ0-6|ZNF419	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7242431640625	2	515.724184	1029.43381	0.43878	0.00022629	0.047399	2.4445E-05	0.48618	0.00025073	515.7242770943416	24.021	0.41556	23.637	23.403	23.819	-0.38324					14	7	3	0	0	0	0.83158	1	8633	8633		9.3831	1.473	1	36310000	+		7078	17099	3947	3979	6878	6878					-0.07972506536498258
EAGKGQSPPP	10	Unmodified	_EAGKGQSPPP_					0	0	0			REV__nc|ENSG00000197971|P02686-6|MBP	REV__nc|ENSG00000197971|P02686-6|MBP	MULTI-MSMS	HCT116MG_D190212_S1	1	484.2388916015625	2	484.245806	966.47706	0.25066	0.00012138	0.25962	0.00012572	0.51028	0.0002471	484.2458495470664	25.744	0.41826	25.744	25.509	25.927	0					15	7	3	0	0	0	0.80458	1	9225	9225		11.64	0.52583	1	83289000	+		7079	17261	3948	3980	6879	6879					-0.0075199348757450934
EAGKQHQP	8	Unmodified	_EAGKQHQP_					0	0	0		ENSG00000159592|ENST00000355105|GPBP1L1	ENSG00000159592|ENST00000355105|GPBP1L1	ENSG00000159592|ENST00000355105|GPBP1L1	MULTI-SECPEP	HCT116MG_D190212_S2	2	448.4298400878906	2	447.725041	893.435529	0.13934	6.2386E-05	2.7135	0.0012149	2.8529	0.0012773	447.72520865746	20.976	0.41605	20.594	20.443	20.859	-0.38288					12	7	2	0	0	0	0.24939	1	7335	7335		30.225	10.968	1	4735200			7080	4417	3949	3981	6880	6880					-0.015451294562353723
EAGLINRYK	9	Unmodified	_EAGLINRYK_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MSMS	HCT116MG_D190212_S4	4	532.296630859375	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.936	1	36.551	36.051	37.051	-0.38486								0	0	0	0.768	1	13536	13536		7.9102	0.62092	1		+		7081	12708	3950	3982	6881	6881					0.053405477088290354
EAGMLDPPFVP	11	Unmodified	_EAGMLDPPFVP_					0	0	0		ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	MSMS	HCT116MG_D190212_S1	1	586.7850952148438	2	586.78645	1171.55835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.387	1	52.387	51.887	52.887	0								0	0	0	0.88801	1	20036	20036		21.537	4.0943	1				7082	6290	3951	3983	6882	6882					-0.02057053839848777
EAGPARGGGY	10	Unmodified	_EAGPARGGGY_					0	0	0		ENST00000425202.5_1_19:51162395-51162548:+|nuORF	ENST00000425202.5_1_19:51162395-51162548:+|nuORF	ENST00000425202.5_1_19:51162395-51162548:+|nuORF	MSMS	HCT116MG_D190212_S2	2	467.72418212890625	2	467.722498	933.430444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.771	1	34.613	34.113	35.113	-0.15834								0	0	0	0.7978	1	12948	12948		29.082	4.4077	1				7083	7810	3952	3984	6883	6883					-0.038934333188535675
EAGPDPLGQA	10	Unmodified	_EAGPDPLGQA_					0	0	0			REV__ENSG00000099999|ENST00000382363|RNF215	REV__ENSG00000099999|ENST00000382363|RNF215	MSMS	HCT116MG_D190212_S2	2	477.7298278808594	2	477.729989	953.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.506	1	26.145	25.645	26.645	-0.36164								0	0	0	0.46343	1	9593	9593		49.554	1.9599	1		+		7084	11055	3953	3985	6884	6884					-0.03315986241511837
EAGPDTESEEY	11	Unmodified	_EAGPDTESEEY_					0	0	0			REV__ENSG00000060709|ENST00000690449|RIMBP2	REV__ENSG00000060709|ENST00000690449|RIMBP2	MSMS	HCT116MG_D190212_S3	3	613.8230590820312	2	613.738405	1225.46226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.782	1	30.522	30.022	31.022	-0.26071								0	0	0	0.9387	1	11222	11222		12.241	2.8575	1		+		7085	10670	3954	3986	6885	6885					-0.1414557493690154
EAGPGADTRK	10	Unmodified	_EAGPGADTRK_					0	0	0		ENST00000469990.1_1_11:555480-556365:-|nuORF;ENSG00000185522|ENST00000329451|LMNTD2	ENST00000469990.1_1_11:555480-556365:-|nuORF	ENST00000469990.1_1_11:555480-556365:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	501.2667236328125	2	501.254163	1000.49377	0.32192	0.00016136	0.45207	0.0002266	0.77399	0.00038797	501.2546369722405	21.135	0.26087	21.166	21.075	21.336	0.03051					6	4	2	0	0	0	0.27023	1	7376	7376		25.399	14.575	1	1635000			7086	8143	3955	3987	6886	6886					-0.006454926016203899
EAGPGRCRR	9	Unmodified	_EAGPGRCRR_					0	0	0			REV__ENST00000446489.1_1_11:1784244-1784937:-|nuORF	REV__ENST00000446489.1_1_11:1784244-1784937:-|nuORF	MSMS	HCT116MG_D190212_S4	4	501.2568054199219	2	501.256517	1000.49848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.919	1	33.534	33.034	34.034	-0.38426								0	0	0	0.64498	1	12365	12365		21.747	4.8044	1		+		7087	15676	3956	3988	6887	6887					-0.0017488693985114878
EAGPGWAPWP	10	Unmodified	_EAGPGWAPWP_					0	0	0		ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	MULTI-SECPEP	HCT116MG_D190212_S3	3	534.3487548828125	2	534.250892	1066.48723	0.56257	0.00030055	0.29757	0.00015898	0.86014	0.00045953	534.7531002564549	43.937	0.20867	43.631	43.448	43.657	-0.30616					5	3	2	0	0	0	0.30991	1	16349	16349		3.9444	0.3479	1	1856200			7088	6657	3957	3989	6888	6888					-0.04335385762374244
EAGQWLSRD	9	Unmodified	_EAGQWLSRD_					0	0	0			REV__ENSG00000262484|ENST00000571838|CCER2	REV__ENSG00000262484|ENST00000571838|CCER2	MSMS	HCT116MG_D190212_S4	4	531.25341796875	2	531.254163	1060.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.417	1	20.216	19.716	20.716	-0.20133								0	0	0	0.76616	1	6988	6988		14.405	0.49933	1		+		7089	14424	3958	3990	6889	6889					-0.03405492601609694
EAGRQGPALDA	11	Unmodified	_EAGRQGPALDA_					0	0	0			REV__ENST00000447351.5_2_22:47022788-47033780:+|nuORF	REV__ENST00000447351.5_2_22:47022788-47033780:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	542.772705078125	2	542.772719	1083.53089	0.51573	0.00027992	0.24741	0.00013429	0.76314	0.00041421	542.7728329402804	23.767	0.67553	23.384	22.884	23.56	-0.38324					24	12	3	0	0	0	0.69138	1	8478	8478		24.991	2.2547	1	11316000	+		7090	15687	3959	3991	6890	6890					-0.007538210558550418
EAGSLLPQPR	10	Unmodified	_EAGSLLPQPR_					0	0	0		ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2960205078125	2	534.29583	1066.57711	0.4896	0.00026159	-0.097409	-5.2045E-05	0.39219	0.00020954	534.295756923485	33.769	0.81624	33.478	32.955	33.771	-0.29013					35	16	3	0	0	0	0.48679	1	12310	12310		36.127	1.195	1	30614000			7091	859	3960	3992	6891	6891					0.04648243846236255
EAGTAWQSEK	10	Unmodified	_EAGTAWQSEK_					0	0	0		ENST00000366672.4_1_1:230416699-230416807:+|nuORF	ENST00000366672.4_1_1:230416699-230416807:+|nuORF	ENST00000366672.4_1_1:230416699-230416807:+|nuORF	MSMS	HCT116MG_D190212_S1	1	553.7604370117188	2	553.759278	1105.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.918	1	28.918	28.418	29.418	0								0	0	0	0.90892	1	10550	10550		13.906	3.0821	1				7092	7374	3961	3993	6892	6892					-0.04452929667036187
EAGVEKQQAGP	11	Unmodified	_EAGVEKQQAGP_					0	0	0		ENST00000586299.1_1_17:76673268-76673652:-|nuORF	ENST00000586299.1_1_17:76673268-76673652:-|nuORF	ENST00000586299.1_1_17:76673268-76673652:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	557.2808227539062	2	557.280377	1112.5462	0.33863	0.00018871	0.26186	0.00014593	0.60049	0.00033464	557.7820427289242	20.919	0.25927	20.709	20.552	20.811	-0.20959					6	4	2	0	0	0	0.72139	1	7219	7219		13.906	2.2658	1	1127900			7093	8993	3962	3994	6893	6893					-0.005569542586727039
EAGVGFAHSPQ	11	Unmodified	_EAGVGFAHSPQ_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;ENST00000528902.1_1_17:72957966-72959197:-|nuORF	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	549.7989501953125	2	550.261988	1098.50942	0.39205	0.00021573	0.19341	0.00010643	0.58546	0.00032216	550.2618744243578	18.988	0.20823	19.057	18.875	19.083	0.069159					5	3	2	0	0	0	0.35938	1	6437	6437		11.495	7.8982	1	2334900			7094	4959	3963	3995	6894	6894					-0.035892060845753804
EAGVGGGEQLR	11	Unmodified	_EAGVGGGEQLR_					0	0	0		POU5F1|p.V103Gfs*86|1|0.14|ENSG00000204531|chr6:31170313-31170314|-/C|frameshift_variant	POU5F1|p.V103Gfs*86|1|0.14|ENSG00000204531|chr6:31170313-31170314|-/C|frameshift_variant	POU5F1|p.V103Gfs*86|1|0.14|ENSG00000204531|chr6:31170313-31170314|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	537.2484741210938	2	536.772719	1071.53089	0.3118	0.00016737	1.256	0.0006742	1.5678	0.00084157	536.773483157555	40.002	0.31021	39.7	39.645	39.955	-0.30137					8	6	2	0	0	0	0.35748	1	14903	14903		4.897	0	1	3350500			7095	9764	3964	3996	6895	6895					-0.002018210558617284
EAGVGRPAV	9	Unmodified	_EAGVGRPAV_					0	0	0		nc|ENSG00000180488|Q8NAN2-2|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1	nc|ENSG00000180488|Q8NAN2-2|MIGA1	nc|ENSG00000180488|Q8NAN2-2|MIGA1	MSMS	HCT116MG_D190212_S4	4	428.23779296875	2	428.237784	854.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.354	1	23.107	22.607	23.607	-0.24775								0	0	0	0.67173	1	8172	8172		20.454	0	1				7096	9565	3965	3997	6896	6896					0.027963450661786737
EAGVISQRLV	10	Unmodified	_EAGVISQRLV_					0	0	0			REV__PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	REV__PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	357.87677001953125	3	357.876746	1070.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.741	1	23.68	23.18	24.18	-0.061449								0	0	0	0.90023	1	8397	8397		9.544	0.56773	1		+		7097	11411	3966	3998	6897	6897					0.07592816880310238
EAGVQAIP	8	Unmodified	_EAGVQAIP_					0	0	0		ENST00000478431.1_1_6:33177709-33177763:+|nuORF	ENST00000478431.1_1_6:33177709-33177763:+|nuORF	ENST00000478431.1_1_6:33177709-33177763:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	784.4201049804688	1	784.419945	783.412668	0.55952	0.0004389	0.057543	4.5138E-05	0.61706	0.00048404	784.4197185364688	38.812	0.67583	38.511	38.144	38.82	-0.30137					16	12	2	0	0	0	0.19608	1	14354	14354		74.423	0	1	3308400			7098	8221	3967	3999	6898	6898					0.012298514262852223
EAGYMQANSD	10	Unmodified	_EAGYMQANSD_					0	0	0			REV__ENST00000373518.1_1_X:72347170-72347401:-|nuORF	REV__ENST00000373518.1_1_X:72347170-72347401:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	543.2139282226562	2	543.213846	1084.41314	0.51497	0.00027974	-0.66154	-0.00035936	-0.14657	-7.9616E-05	543.2136789017471	43.396	0.50469	43.092	42.945	43.45	-0.30472					15	9	2	0	0	0	0.73913	1	16206	16206		17.113	4.0704	1	10647000	+		7099	15191	3968	4000	6899	6899					-0.12569141706831033
EAGYMQANSD	10	Unmodified	_EAGYMQANSD_					0	0	0			REV__ENST00000373518.1_1_X:72347170-72347401:-|nuORF	REV__ENST00000373518.1_1_X:72347170-72347401:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	543.213846	1084.41314	0.46006	0.00024991	-0.11203	-6.0857E-05	0.34803	0.00018905	543.2137304922543	43.134	0.26123	43.134	43.003	43.264	0	0.020905	0.00040396	NaN	17.113	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3270100	+		7100	15191	3968	4000							-0.12569141706831033
EAGYMQANSD	10	Unmodified	_EAGYMQANSD_					0	0	0			REV__ENST00000373518.1_1_X:72347170-72347401:-|nuORF	REV__ENST00000373518.1_1_X:72347170-72347401:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	543.213846	1084.41314	0.51497	0.00027974	-0.66154	-0.00035936	-0.14657	-7.9616E-05	543.2136789017471	43.396	0.50469	43.092	42.945	43.45	-0.30472	-0.020905	-0.00019304	NaN	17.113	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10647000	+		7101	15191	3968	4000							-0.12569141706831033
EAHEQLNVKH	10	Unmodified	_EAHEQLNVKH_					0	0	0		ENSG00000101052|ENST00000373030|IFT52	ENSG00000101052|ENST00000373030|IFT52	ENSG00000101052|ENST00000373030|IFT52	MULTI-SECPEP	HCT116MG_D190212_S4	4	603.188232421875	2	602.807094	1203.59963	1.2372	0.00074577	-0.93186	-0.00056173	0.3053	0.00018404	602.8064983708867	21.759	0.46733	21.541	21.374	21.841	-0.21832					13	8	2	0	0	0	0.30856	1	7503	7503		6.7232	3.4419	1	3759600			7102	1750	3969	4001	6900	6900					0.005978432438496384
EAHEWEGKFS	10	Unmodified	_EAHEWEGKFS_					0	0	0			REV__nc|ENSG00000197586|O75354-2|ENTPD6	REV__nc|ENSG00000197586|O75354-2|ENTPD6	MULTI-MSMS	HCT116MG_D190212_S2	2	610.2723999023438	2	610.272552	1218.53055	0.59799	0.00036494	-1.1264	-0.00068741	-0.52841	-0.00032247	610.2717410279879	22.669	0.20778	22.284	22.154	22.362	-0.3852					8	3	3	0	0	0	0.78781	1	8054	8054		13.042	5.7532	1	15015000	+		7103	14080	3970	4002	6901	6901					-0.06997240775717728
EAHHVISAIP	10	Unmodified	_EAHHVISAIP_					0	0	0		PPOX|p.D280H|1|0.14|ENSG00000143224|chr1:161169690-161169690|G/C|missense_variant	PPOX|p.D280H|1|0.14|ENSG00000143224|chr1:161169690-161169690|G/C|missense_variant	PPOX|p.D280H|1|0.14|ENSG00000143224|chr1:161169690-161169690|G/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	537.2888793945312	2	537.290548	1072.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.626	1	18.446	17.946	18.946	-0.18052								0	0	0	0.93099	1	6264	6264		10.074	3.3508	1				7104	9768	3971	4003	6902	6902					0.033162611917987306
EAHNWLSL	8	Unmodified	_EAHNWLSL_					0	0	0			REV__FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant	REV__FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	484.751220703125	2	485.243067	968.47158	0.2645	0.00012835	0.10991	5.3331E-05	0.37441	0.00018168	485.24306427108263	34.273	0.31196	34.097	33.967	34.279	-0.17512					7	5	2	0	0	0	0.31507	1	12799	12799		9.3474	0	1	21468000	+		7105	11639	3972	4004	6903	6903					-0.013916722793851477
EAHPVEEKP	9	Unmodified	_EAHPVEEKP_					0	0	0			REV__BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant	REV__BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2587890625	2	518.258914	1034.50327	0.057198	2.9643E-05	-0.082629	-4.2823E-05	-0.025432	-1.318E-05	518.2588138819516	16.995	1.8208	17.079	16.08	17.901	0.084469					49	34	2	0	0	0	0.26536	1	5889	5889		34.402	3.7652	1	3187800	+		7106	10068	3973	4005	6904	6904					-0.01259724316082611
EAHQPKCPEN	10	Unmodified	_EAHQPKCPEN_					0	0	0		nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	MSMS	HCT116MG_D190212_S2	2	576.7584838867188	2	576.758755	1151.50296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.702	1	30.435	29.935	30.935	-0.26704								0	0	0	0.90669	1	11298	11298		14.405	0.49933	1				7107	3267	3974	4006	6905	6905					-0.06673467307587089
EAHRAFPPP	9	Unmodified	_EAHRAFPPP_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MSMS	HCT116MG_D190212_S2	2	511.26409912109375	2	511.264333	1020.51411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.309	1	33.116	32.616	33.616	-0.19297								0	0	0	0.76641	1	12354	12354		13.508	0.97634	1				7108	6259	3975	4007	6906	6906					0.004677228488390028
EAHSGATLTKH	11	Unmodified	_EAHSGATLTKH_					0	0	0			REV__nc|ENSG00000146215|Q6Q6R5-4|CRIP3	REV__nc|ENSG00000146215|Q6Q6R5-4|CRIP3	MSMS	HCT116MG_D190212_S1	1	576.2935791015625	2	576.293819	1150.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.85	1	19.85	19.35	20.35	0								0	0	0	0.90489	1	6906	6906		19.362	2.7961	1		+		7109	12479	3976	4008	6907	6907					0.003821543525191373
EAHVKLAQY	9	Unmodified	_EAHVKLAQY_					0	0	0			REV__nc|ENSG00000138162|O95359-6|TACC2	REV__nc|ENSG00000138162|O95359-6|TACC2	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7852783203125	2	529.785099	1057.55564	0.60314	0.00031954	-0.39044	-0.00020685	0.2127	0.00011269	529.7848596424371	41.592	0.30799	41.523	41.345	41.653	-0.068199					10	5	2	0	0	0	0.59184	1	15772	15772		11.64	3.7301	1	38146000	+		7110	12214	3977	4009	6908	6908					0.029168588175025434
EAIEKFIREP	10	Unmodified	_EAIEKFIREP_					0	0	0		nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	MSMS	HCT116MG_D190212_S2	2	616.69970703125	2	616.337695	1230.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.61	1	17.254	16.754	17.754	-0.35586								0	0	0	0.93099	1	6004	6004		6.2058	1.8765	1				7111	2649	3978	4010	6909	6909					0.054733552232846705
EAIENFRT	8	Unmodified	_EAIENFRT_					0	0	0		ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1;ENST00000488737.6_1_7:87133561-87160896:-|nuORF	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	ABCB1|p.P1016Lfs*2|1|0.23|ENSG00000085563|chr7:87516546-87516546|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	490.2458801269531	2	490.245806	978.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.068	1	34.771	34.271	35.271	-0.29707								0	0	0	0.69969	1	12931	12931		30.637	5.2372	1				7112	7	3979	4011	6910	6910					-0.013039934875678227
EAIERMKQKE	10	Unmodified	_EAIERMKQKE_					0	0	0		ENSG00000165972|ENST00000344280|CCDC38;CCDC38|p.K536Nfs*12|1|0.47|ENSG00000165972|chr12:95867160-95867160|T/-|frameshift_variant	ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	MSMS	HCT116MG_D190212_S2	2	631.3297729492188	2	631.332087	1260.64962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.459	1	33.266	32.766	33.766	-0.19297								0	0	0	0.84701	1	12416	12416		22.736	2.2827	1				7113	351	3980	4012	6911	6911					0.029722098574893607
EAIIVTRNSV	10	Unmodified	_EAIIVTRNSV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S1	1	368.5487365722656	3	367.880267	1100.61897	0.0046806	1.7219E-06	-0.32712	-0.00012034	-0.32244	-0.00011862	367.8800849721543	17.959	0.41704	17.959	17.672	18.089	0					13	7	3	0	0	0	0.87949	1	6105	6105		3.5871	0.26742	1	38906000			7114	4258;9506	3981	4013	6912	6912					0.07268799534745085
EAIKEFQKN	9	Unmodified	_EAIKEFQKN_					0	0	0			REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	553.7979736328125	2	553.795663	1105.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.425	1	56.141	55.641	56.641	-0.28367								0	0	0	0.76694	1	21420	21420		11.64	2.2929	1		+		7115	14149	3982	4014	6913	6913					0.028208241263882883
EAIKKAVEETY	11	Unmodified	_EAIKKAVEETY_					0	0	0			REV__tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	REV__tr|U7T304|U7T304_FUSNUTatDDNasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00528PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	640.9990234375	2	640.840268	1279.66598	0.71651	0.00045917	0.12515	8.02E-05	0.84166	0.00053937	640.8402874138063	39.33	0.56047	39.252	39.019	39.579	-0.077835					24	10	3	0	0	0	0.74109	1	14713	14713		6.6304	6.6304	1	741170000	+		7116	17938	3983	4015	6914	6914					0.0373361429524266
EAIMVLSDF	9	Unmodified	_EAIMVLSDF_					0	0	0		ENSG00000147697|ENST00000276708|GSDMC	ENSG00000147697|ENST00000276708|GSDMC	ENSG00000147697|ENST00000276708|GSDMC	MSMS	HCT116MG_D190212_S3	3	512.7554931640625	2	512.754618	1023.49468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.795	1	37.494	36.994	37.994	-0.30137								0	0	0	0.67173	1	13987	13987		20.454	0	1				7117	3999	3984	4016	6915	6915					-0.016124142769285754
EAIRSSGQP	9	Unmodified	_EAIRSSGQP_					0	0	0		ENSG00000135324|ENST00000257776|MRAP2	ENSG00000135324|ENST00000257776|MRAP2	ENSG00000135324|ENST00000257776|MRAP2	MULTI-MSMS	HCT116MG_D190212_S3	3	472.7435607910156	2	472.743431	943.472308	0.0819	3.8718E-05	0.44799	0.00021179	0.52989	0.0002505	472.7434678464047	21.174	0.20811	21.193	21.063	21.271	0.018446					5	3	2	0	0	0	0.30117	1	7391	7391		30.637	1.555	1	5126700			7118	3339	3985	4017	6916	6916					-0.0016887763032400471
EAIRSSGQP	9	Unmodified	_EAIRSSGQP_					0	0	0		ENSG00000135324|ENST00000257776|MRAP2	ENSG00000135324|ENST00000257776|MRAP2	ENSG00000135324|ENST00000257776|MRAP2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	472.743431	943.472308	0.12848	6.0739E-05	0.47182	0.00022305	0.60031	0.00028379	472.7436317155429	21.929	0.20844	21.544	21.375	21.583	-0.38503	0.17588	2.3007E-06	NaN	30.637	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6307600			7119	3339	3985	4017							-0.0016887763032400471
EAIVKKQIVK	10	Unmodified	_EAIVKKQIVK_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-5|DNM3	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	578.375244140625	2	578.376623	1154.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.463	1	43.157	42.657	43.657	-0.30603								0	0	0	0.96377	1	16219	16219		1.6526	0	1				7120	718;6190	3986	4018	6917	6917					0.16751412879307281
EAIVWQQP	8	Unmodified	_EAIVWQQP_					0	0	0		ENST00000526183.5_1_8:145725999-145727283:+|nuORF;PPP1R16A|p.H445Tfs*15|3|0.24|ENSG00000160972|chr8:144501644-144501644|C/-|frameshift_variant;ENSG00000160972|ENST00000435887|PPP1R16A	ENST00000526183.5_1_8:145725999-145727283:+|nuORF	ENST00000526183.5_1_8:145725999-145727283:+|nuORF	MSMS	HCT116MG_D190212_S2	2	485.75146484375	2	485.753267	969.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.845	1	20.462	19.962	20.962	-0.38244								0	0	0	0.43258	1	7305	7305		46.921	10.877	1				7121	4473	3987	4019	6918	6918					0.006014983804220719
EAKEKTEKP	9	Unmodified	_EAKEKTEKP_					0	0	0		GSPT2|p.N246Tfs*11|1|0.8|ENSG00000189369|chrX:51744357-51744357|A/-|frameshift_variant	GSPT2|p.N246Tfs*11|1|0.8|ENSG00000189369|chrX:51744357-51744357|A/-|frameshift_variant	GSPT2|p.N246Tfs*11|1|0.8|ENSG00000189369|chrX:51744357-51744357|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	530.7673950195312	2	530.287671	1058.56079	0.13831	7.3345E-05	0.11806	6.2605E-05	0.25637	0.00013595	530.2878271332183	17.478	0.36412	17.559	17.43	17.794	0.081358					10	6	2	0	0	0	0.15584	1	5881	5881		41.956	19.297	1	5029100			7122	9201	3988	4020	6919	6919					0.03385117889456524
EAKKFLFP	8	Unmodified	_EAKKFLFP_					0	0	0			REV__ENST00000270460.10_2_19:56208640-56208850:+|nuORF	REV__ENST00000270460.10_2_19:56208640-56208850:+|nuORF	MSMS	HCT116MG_D190212_S3	3	490.2857666015625	2	490.284203	978.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.923	1	27.735	27.235	28.235	-0.18847								0	0	0	0.8837	1	10084	10084		5.7604	0.52976	1		+		7123	14694	3989	4021	6920	6920					0.06371849799563734
EAKMVISSM	9	Unmodified	_EAKMVISSM_					0	0	0			REV__ENST00000507282.1_1_5:1488500-1495016:-|nuORF	REV__ENST00000507282.1_1_5:1488500-1495016:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	498.4127502441406	2	498.248646	994.482739	0.44764	0.00022304	-0.31659	-0.00015774	0.13105	6.5294E-05	498.24832974516306	14.832	0.15611	14.832	14.754	14.91	0					4	2	2	0	0	0	0.26328	1	4887	4887		4.3292	0	1	1280700	+		7124	12653	3990	4022	6921	6921					-0.014723542917522536
EAKPCSNSPP	10	Unmodified	_EAKPCSNSPP_					0	0	0		ENST00000469298.5_1_9:6413336-6434174:+|nuORF;UHRF2|p.G427Afs*39|1|0.18|ENSG00000147854|chr9:6481759-6481759|G/-|frameshift_variant;nc|ENSG00000147854|Q96PU4-2|UHRF2;ENSG00000147854|ENST00000276893|UHRF2	ENST00000469298.5_1_9:6413336-6434174:+|nuORF	ENST00000469298.5_1_9:6413336-6434174:+|nuORF	MSMS	HCT116MG_D190212_S4	4	515.237060546875	2	515.237124	1028.45969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.293	1	25.014	24.514	25.514	-0.27958								0	0	0	0.85631	1	8956	8956		21.537	0	1				7125	4002	3991	4023	6922	6922					-0.05339657084891769
EAKPRGWGGR	10	Unmodified	_EAKPRGWGGR_					0	0	0			REV__ENST00000449946.5_1_15:43885824-43886399:+|nuORF	REV__ENST00000449946.5_1_15:43885824-43886399:+|nuORF	MSMS	HCT116MG_D190212_S3	3	557.2990112304688	2	557.299239	1112.58392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.687	1	32.402	31.902	32.902	-0.28511								0	0	0	0.87318	1	11989	11989		19.362	3.2128	1		+		7126	15702	3992	4024	6923	6923					0.03213601517472853
EAKQLNFY	8	Unmodified	_EAKQLNFY_					0	0	0			REV__ENST00000508722.5_1_5:34839321-34867279:+|nuORF	REV__ENST00000508722.5_1_5:34839321-34867279:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	506.7296447753906	2	506.758549	1011.50255	0.20271	0.00010273	-1.929	-0.00097756	-1.7263	-0.00087484	506.7579731978748	30.674	0.30879	30.407	30.199	30.508	-0.26704					7	5	2	0	0	0	0.69862	1	11204	11204		23.148	2.2772	1	8709600	+		7127	14234	3993	4025	6924	6924					-0.002745189651477631
EAKQNADPEAD	11	Unmodified	_EAKQNADPEAD_					0	0	0			REV__SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant	REV__SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	594.262451171875	2	594.262382	1186.51021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.747	1	26.394	25.894	26.894	-0.35254								0	0	0	0.9465	1	9690	9690		8.1555	1.4324	1		+		7128	10702	3994	4026	6925	6925					-0.07558456226206545
EAKRERAS	8	Unmodified	_EAKRERAS_					0	0	0			REV__ENST00000325509.4_1_8:72756397-72756520:-|nuORF	REV__ENST00000325509.4_1_8:72756397-72756520:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	474.2259826660156	2	473.756872	945.499192	0.11675	5.5309E-05	-0.45529	-0.0002157	-0.33855	-0.00016039	473.7566492410639	15.216	0.26069	14.889	14.706	14.967	-0.32684					7	4	2	0	0	0	0.30703	1	5015	5015		12.532	12.532	1	3645900	+		7129	14904	3995	4027	6926	6926					0.024262309808477767
EAKYKLESQ	9	Unmodified	_EAKYKLESQ_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MSMS	HCT116MG_D190212_S4	4	548.2469482421875	2	548.287671	1094.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.838	1	27.516	27.016	28.016	-0.32157								0	0	0	0.69648	1	9984	9984		19.257	0	1		+		7130	13744	3996	4028	6927	6927					0.017291178894765835
EALAEKQF	8	Unmodified	_EALAEKQF_					0	0	0			REV__nc|ENSG00000137841|Q00722-3|PLCB2	REV__nc|ENSG00000137841|Q00722-3|PLCB2	MSMS	HCT116MG_D190212_S3	3	468.24481201171875	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.925	1	26.756	26.256	27.256	-0.16933								0	0	0	0.8837	1	9681	9681		14.582	0.67564	1		+		7131	12194	3997	4029	6928	6928					0.006137921435197313
EALAESVAQ	9	Unmodified	_EALAESVAQ_					0	0	0		ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	MULTI-MSMS	HCT116MG_D190212_S2	2	917.4578247070312	1	917.457453	916.450176	0.46787	0.00042925	0.25046	0.00022978	0.71832	0.00065903	917.4575369665231	30.594	0.30879	30.309	30.182	30.491	-0.28453					9	5	2	0	0	0	0.12205	1	11262	11262		53.833	8.1332	1	39582000			7132	5768	3998	4030	6929	6929					-0.011391020987616685
EALAESVAQ	9	Unmodified	_EALAESVAQ_					0	0	0		ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	ENSG00000184389|ENST00000442999|A3GALT2	MULTI-MSMS	HCT116MG_D190212_S3	3	917.4571533203125	1	917.457453	916.450176	0.68366	0.00062722	-0.33283	-0.00030536	0.35082	0.00032187	917.4570162355684	30.683	0.30773	30.422	30.297	30.604	-0.26071					11	6	3	0	0	0	0.077982	1	11184	11184		62.573	3.8939	1	21626000			7133	5768	3998	4030	6930	6930					-0.011391020987616685
EALAGFLFEH	10	Unmodified	_EALAGFLFEH_					0	0	0			REV__ENSG00000133422|ENST00000397641|MORC2	REV__ENSG00000133422|ENST00000397641|MORC2	MULTI-MSMS	HCT116MG_D190212_S4	4	566.2763671875	2	567.284931	1132.55531	0.47538	0.00026968	-0.74621	-0.00042331	-0.27082	-0.00015363	567.284599728666	21.295	0.46766	21.086	20.863	21.331	-0.20959					10	4	3	0	0	0	0.69918	1	7366	7366		20.454	0.039092	1	11706000	+		7134	12030	3999	4031	6931	6931					-0.005665609023481011
EALAGRCPPP	10	Unmodified	_EALAGRCPPP_					0	0	0		BCL3|p.P412Lfs*70|1|0.47|ENSG00000069399|chr19:44759480-44759480|C/-|frameshift_variant	BCL3|p.P412Lfs*70|1|0.47|ENSG00000069399|chr19:44759480-44759480|C/-|frameshift_variant	BCL3|p.P412Lfs*70|1|0.47|ENSG00000069399|chr19:44759480-44759480|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	505.75927734375	2	505.758027	1009.5015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.99	1	24.713	24.213	25.213	-0.27769								0	0	0	0.90023	1	8834	8834		15.847	4.2069	1				7135	258	4000	4032	6932	6932					-0.0028705660571404223
EALAIYPP	8	Unmodified	_EALAIYPP_					0	0	0		ENSG00000007866|ENST00000338863|TEAD3;ENST00000402886.7_1_6:35444208-35454475:-|nuORF;TEAD2|p.W172Gfs*6|1|0.43|ENSG00000074219|chr19:49355162-49355162|G/-|frameshift_variant;TEAD1|p.Y306Mfs*3|1|0.42|ENSG00000187079|chr11:12924950-12924950|T/-|frameshift_variant;nc|ENSG00000187079|P28347-2|TEAD1;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000187079|ENST00000527636|TEAD1;ENSG00000197905|ENST00000359864|TEAD4;nc|ENSG00000074219|Q15562|TEAD2;nc|ENSG00000074219|Q15562-2|TEAD2;ENSG00000074219|ENST00000593945|TEAD2	ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	MSMS	HCT116MG_D190212_S1	1	437.2376708984375	2	437.239461	872.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.276	1	17.276	16.776	17.776	0								0	0	0	0.8837	1	5870	5870		10.183	0	1				7136	852	4001	4033	6933	6933					0.023035951201904936
EALCRTCKI	9	Unmodified	_EALCRTCKI_					0	0	0			REV__ENSG00000105248|ENST00000262962|YJU2	REV__ENSG00000105248|ENST00000262962|YJU2	MULTI-MSMS	HCT116MG_D190212_S3	3	518.7692260742188	2	518.767537	1035.52052	0.12864	6.6733E-05	-4.3487	-0.002256	-4.2201	-0.0021893	518.7691020279245	35.947	0.79383	35.647	35.352	36.145	-0.30041					38	17	4	0	0	0	0.16144	1	13311	13311		46.021	3.9264	1	30008000	+		7137	11243	4002	4034	6934	6934					0.004181566937177195
EALCTACCHL	10	Unmodified	_EALCTACCHL_					0	0	0		nc|ENSG00000293487|P0DO92|CDIPTOSP;ENST00000565014.5_2_16:29874917-29876497:+|nuORF	nc|ENSG00000293487|P0DO92|CDIPTOSP	nc|ENSG00000293487|P0DO92|CDIPTOSP	MULTI-MSMS	HCT116MG_D190212_S4	4	532.2225341796875	2	532.222105	1062.42966	0.42181	0.0002245	1.9841	0.001056	2.406	0.0012805	532.2231807142527	43.512	0.41871	43.138	42.997	43.415	-0.37433					14	9	2	0	0	0	0.54141	1	15973	15973		32.305	9.1571	1	22241000			7138	8853	4003	4035	6935	6935					-0.09906055346095854
EALDPLFMD	9	Unmodified	_EALDPLFMD_					0	0	0		UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;ENST00000568782.1_1_15:43295571-43307995:-|nuORF	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	525.7919311523438	2	525.74425	1049.47395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.887	1	26.722	26.222	27.222	-0.1649								0	0	0	0.76575	1	9666	9666		15.847	1.0089	1				7139	4415	4004	4036	6936	6936					-0.04881004656613186
EALDTTKDP	9	Unmodified	_EALDTTKDP_					0	0	0		SPOCK2|p.C313Lfs*37|1|0.5|ENSG00000107742|chr10:72064232-72064233|-/G|frameshift_variant;ENSG00000107742|ENST00000373109|SPOCK2	SPOCK2|p.C313Lfs*37|1|0.5|ENSG00000107742|chr10:72064232-72064233|-/G|frameshift_variant	SPOCK2|p.C313Lfs*37|1|0.5|ENSG00000107742|chr10:72064232-72064233|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	494.75714111328125	2	495.242929	988.471305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.943	1	20.977	20.477	21.477	0.034473								0	0	0	0.69648	1	7272	7272		19.257	0	1				7140	2126	4005	4037	6937	6937					-0.02339136789908025
EALEAELQA	9	Unmodified	_EALEAELQA_					0	0	0		ENSG00000128482|ENST00000461366|RNF112;nc|ENSG00000128482|Q9ULX5-2|RNF112	ENSG00000128482|ENST00000461366|RNF112	ENSG00000128482|ENST00000461366|RNF112	MSMS	HCT116MG_D190212_S2	2	487.217529296875	2	487.245472	972.476391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.814	1	39.741	39.241	40.241	-0.072838								0	0	0	0.21855	1	14997	14997		46.021	0	1				7141	2995	4006	4038	6938	6938					-0.010948329272764568
EALEAKPPQP	10	Unmodified	_EALEAKPPQP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MSMS	HCT116MG_D190212_S3	3	540.4931640625	2	540.290214	1078.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.815	1	32.53	32.03	33.03	-0.28511								0	0	0	0.88261	1	12041	12041		18.146	1.0335	1		+		7142	12127	4007	4039	6939	6939					0.029734217520854145
EALECGHFV	9	Unmodified	_EALECGHFV_					0	0	0		ENST00000392621.5_1_17:72517922-72518024:-|nuORF	ENST00000392621.5_1_17:72517922-72518024:-|nuORF	ENST00000392621.5_1_17:72517922-72518024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7296142578125	2	502.728935	1003.44332	0.51034	0.00025656	1.1014	0.00055372	1.6118	0.00081028	502.729371739552	44.077	0.46906	43.77	43.395	43.864	-0.30716					12	8	2	0	0	0	0.39063	1	16468	16468		23.148	2.6948	1	2672700			7143	7614	4008	4040	6940	6940					-0.05826738250971175
EALEPLNEP	9	Unmodified	_EALEPLNEP_					0	0	0			REV__HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant	REV__HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	506.25286865234375	2	506.253297	1010.49204	0.36455	0.00018456	-0.077692	-3.9332E-05	0.28686	0.00014522	506.2529039057877	24.857	0.31197	24.773	24.549	24.861	-0.083694					9	5	3	0	0	0	0.28073	1	8877	8877		32.786	2.1491	1	5655300	+		7144	12222	4009	4041	6941	6941					-0.012785464102307742
EALGIKSLALP	11	Unmodified	_EALGIKSLALP_					0	0	0		ENST00000476381.5_1_X:15447791-15497935:-|nuORF	ENST00000476381.5_1_X:15447791-15497935:-|nuORF	ENST00000476381.5_1_X:15447791-15497935:-|nuORF	MSMS	HCT116MG_D190212_S4	4	371.2273864746094	3	371.228897	1110.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.624	1	40.246	39.746	40.746	-0.37828								0	0	0	0.95705	1	14911	14911		2.6312	0.88896	1				7145	8205	4010	4042	6942	6942					0.11395444716981729
EALGNRAAAP	10	Unmodified	_EALGNRAAAP_					0	0	0			REV__nc|ENSG00000139977|Q147X3-2|NAA30	REV__nc|ENSG00000139977|Q147X3-2|NAA30	MSMS	HCT116MG_D190212_S3	3	485.2606506347656	2	485.259248	968.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.988	1	34.691	34.191	35.191	-0.29707								0	0	0	0.88261	1	12898	12898		18.146	0.011366	1		+		7146	12281	4011	4043	6943	6943					0.01843115123597272
EALGTGPSSGV	11	Unmodified	_EALGTGPSSGV_					0	0	0		ENST00000569796.1_1_16:2278422-2280215:+|nuORF	ENST00000569796.1_1_16:2278422-2280215:+|nuORF	ENST00000569796.1_1_16:2278422-2280215:+|nuORF	MSMS	HCT116MG_D190212_S2	2	487.2751770019531	2	487.743096	973.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.612	1	16.27	15.77	16.77	-0.34183								0	0	0	0.92235	1	5602	5602		17.113	0.1706	1				7147	8883	4012	4044	6944	6944					-0.016157170700239476
EALIKHKP	8	Unmodified	_EALIKHKP_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S1	1	468.2872619628906	2	468.287277	934.560001	0.13587	6.3628E-05	0.24379	0.00011417	0.37967	0.00017779	468.28739160730333	18.897	0.31281	18.897	18.662	18.975	0					9	5	2	0	0	0	0.19352	1	6551	6551		74.929	53.182	1	6247400			7148	3958	4013	4045	6945	6945					0.09010368031078997
EALIKHKP	8	Unmodified	_EALIKHKP_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S2	2	468.2872009277344	2	468.287277	934.560001	0.21141	9.9E-05	-0.097152	-4.5495E-05	0.11426	5.3505E-05	468.2871642648647	19.748	0.46716	19.373	19.039	19.506	-0.37503					18	8	3	0	0	0	0.043218	1	6844	6844		131.27	91.31	1	22311000			7149	3958	4013	4045	6946	6946					0.09010368031078997
EALIKHKP	8	Unmodified	_EALIKHKP_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S3	3	468.2869873046875	2	468.287277	934.560001	0.22304	0.00010445	0.014816	6.9381E-06	0.23786	0.00011139	468.2872867401142	18.311	0.46851	18.387	18.049	18.518	0.076334					17	8	3	0	0	0	0.11121	1	6184	6184		92.491	61.855	1	6894200			7150	3958	4013	4045	6947	6947					0.09010368031078997
EALIKRFLR	9	Unmodified	_EALIKRFLR_					0	0	0			REV__ENST00000345523.8_1_19:51307880-51308054:-|nuORF	REV__ENST00000345523.8_1_19:51307880-51308054:-|nuORF	MSMS	HCT116MG_D190212_S2	2	573.7866821289062	2	573.361308	1144.70806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.328	1	23.948	23.448	24.448	-0.38003								0	0	0	0.71946	1	8713	8713		18.146	6.5061	1		+		7151	15010	4014	4046	6948	6948					0.14149679284923877
EALKDPVGRE	10	Unmodified	_EALKDPVGRE_					0	0	0		RGS7|p.S395Vfs*17|1|0.09|ENSG00000182901|chr1:240806227-240806227|G/-|frameshift_variant;nc|ENSG00000182901|P49802-4|RGS7;nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182901|P49802-3|RGS7;nc|ENSG00000182901|P49802-5|RGS7;ENSG00000182901|ENST00000440928|RGS7	RGS7|p.S395Vfs*17|1|0.09|ENSG00000182901|chr1:240806227-240806227|G/-|frameshift_variant	RGS7|p.S395Vfs*17|1|0.09|ENSG00000182901|chr1:240806227-240806227|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	557.2986450195312	2	557.29857	1112.58259	0.33336	0.00018578	-0.29967	-0.000167	0.033693	1.8777E-05	557.2982524644082	32.666	0.25964	32.287	32.157	32.416	-0.37924					7	4	2	0	0	0	0.81464	1	11936	11936		10.8	0	1	2855900			7152	5691	4015	4047	6949	6949					0.030799226380622713
EALKKELS	8	Unmodified	_EALKKELS_					0	0	0		ENSG00000187017|ENST00000645284|ESPN	ENSG00000187017|ENST00000645284|ESPN	ENSG00000187017|ENST00000645284|ESPN	MSMS	HCT116MG_D190212_S3	3	459.2691650390625	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.081	1	31.803	31.303	32.303	-0.27841								0	0	0	0.8837	1	11745	11745		12.532	0	1				7153	5925	4016	4048	6950	6950					0.06134651694674176
EALKWRWRWQQ	11	Unmodified	_EALKWRWRWQQ_					0	0	0		OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant	OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant	OTUD7A|p.R248W|1|0.29|ENSG00000169918|chr15:31527219-31527219|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	793.9238891601562	2	793.920584	1585.82661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.739	1	22.739	22.239	23.239	0								0	0	0	0.95087	1	8065	8065		7.1017	1.8048	1				7154	9722	4017	4049	6951	6951					0.057134265226522984
EALLKMRRQH	10	Unmodified	_EALLKMRRQH_					0	0	0		EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant;nc|ENSG00000113790|Q08426-2|EHHADH;EHHADH|p.K700Nfs*10|1|0.44|ENSG00000113790|chr3:185192298-185192298|T/-|frameshift_variant;ENSG00000113790|ENST00000231887|EHHADH	EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant	EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	427.91131591796875	3	427.911796	1280.71356	0.2588	0.00011075	2.508	0.0010732	2.7668	0.0011839	427.9113335828227	31.727	0.62117	31.478	31.147	31.768	-0.24883					16	11	2	0	0	0	0.87343	1	11709	11709		5.0475	1.2016	1	18596000			7155	763	4018	4050	6952	6952					0.08443034805100069
EALLMLTRI	9	Unmodified	_EALLMLTRI_					0	0	0			REV__PTCD1|p.T491M|1|0.55|ENSG00000106246|chr7:99425060-99425060|G/A|missense_variant	REV__PTCD1|p.T491M|1|0.55|ENSG00000106246|chr7:99425060-99425060|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	353.8802795410156	3	353.87921	1058.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.32	1	16.32	15.82	16.82	0								0	0	0	0.768	1	5484	5484		4.897	0	1		+		7156	17450	4019	4051	6953	6953					0.08883833156369292
EALLWTQFS	9	Unmodified	_EALLWTQFS_					0	0	0			REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	547.7794189453125	2	547.779482	1093.54441	0.38661	0.00021177	-0.80969	-0.00044353	-0.42309	-0.00023176	547.7789152532667	19.925	0.31271	19.973	19.791	20.103	0.048107					9	5	2	0	0	0	0.45867	1	6866	6866		19.257	0	1	11818000	+		7157	14761	4020	4052	6954	6954					0.0013803672336507589
EALLWTQFS	9	Unmodified	_EALLWTQFS_					0	0	0			REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	547.7792358398438	2	547.779482	1093.54441	0.54881	0.00030063	-0.92393	-0.00050611	-0.37512	-0.00020548	547.7788717247539	20.167	0.2078	19.966	19.833	20.04	-0.20133					6	3	2	0	0	0	0.45867	1	6899	6899		19.257	19.257	1	4161300	+		7158	14761	4020	4052	6955	6955					0.0013803672336507589
EALLWTQFS	9	Unmodified	_EALLWTQFS_					0	0	0			REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	547.779482	1093.54441	0.41985	0.00022998	-1.1105	-0.00060829	-0.69061	-0.0003783	547.7788907753451	20.536	0.21338	20.157	20.023	20.236	-0.37949	0.12486	-8.6892E-05	NaN	19.257	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16930000	+		7159	14761	4020	4052							0.0013803672336507589
EALLWTQFS	9	Unmodified	_EALLWTQFS_					0	0	0			REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	547.779482	1093.54441	0.38661	0.00021177	-0.80969	-0.00044353	-0.42309	-0.00023176	547.7789152532667	19.925	0.31271	19.973	19.791	20.103	0.048107	-0.058833	0.00024261	NaN	19.257	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11818000	+		7160	14761	4020	4052							0.0013803672336507589
EALLWTQFS	9	Unmodified	_EALLWTQFS_					0	0	0			REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	REV__ENST00000296577.8_1_4:146019196-146019343:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	547.779482	1093.54441	0.54881	0.00030063	-0.92393	-0.00050611	-0.37512	-0.00020548	547.7788717247539	20.167	0.2078	19.966	19.833	20.04	-0.20133	-0.06603	0.00011746	NaN	19.257	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4161300	+		7161	14761	4020	4052							0.0013803672336507589
EALPYIEIAE	10	Unmodified	_EALPYIEIAE_					0	0	0			REV__ENSG00000105732|ENST00000359044|ZNF574	REV__ENSG00000105732|ENST00000359044|ZNF574	MULTI-SECPEP	HCT116MG_D190212_S2	2	574.7992553710938	2	574.297704	1146.58086	0.50831	0.00029192	0.21545	0.00012373	0.72376	0.00041565	574.7993912147185	52.424	0.25716	52.237	52.142	52.399	-0.18726					8	4	3	0	0	0	0.3093	1	20192	20192		5.7319	0	1	10413000	+		7162	11271	4021	4053	6956	6956					0.013428688294197855
EALQKTTP	8	Unmodified	_EALQKTTP_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MSMS	HCT116MG_D190212_S3	3	444.2453308105469	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.507	1	23.467	22.967	23.967	-0.03968								0	0	0	0.65638	1	8303	8303		34.102	7.2188	1				7163	3241	4022	4054	6957	6957					0.028217921435157223
EALRSRPGSPA	11	Unmodified	_EALRSRPGSPA_					0	0	0		RTN4RL2|p.G373Afs*151|1|0.62|ENSG00000186907|chr11:57476760-57476760|G/-|frameshift_variant	RTN4RL2|p.G373Afs*151|1|0.62|ENSG00000186907|chr11:57476760-57476760|G/-|frameshift_variant	RTN4RL2|p.G373Afs*151|1|0.62|ENSG00000186907|chr11:57476760-57476760|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	570.8096313476562	2	570.809636	1139.60472	0.4455	0.00025429	-0.25854	-0.00014758	0.18696	0.00010672	570.8094427782327	15.553	0.26054	15.638	15.508	15.769	0.085423					7	4	2	0	0	0	0.71776	1	5109	5109		15.248	0.8431	1	4146800			7164	18133	4023	4055	6958	6958					0.04050147106499935
EALSSLGFSV	10	Unmodified	_EALSSLGFSV_					0	0	0		ENSG00000181444|ENST00000302017|ZNF467	ENSG00000181444|ENST00000302017|ZNF467	ENSG00000181444|ENST00000302017|ZNF467	MULTI-SECPEP	HCT116MG_D190212_S3	3	505.245849609375	2	505.263665	1008.51278	0.39515	0.00019965	-0.24697	-0.00012479	0.14818	7.4868E-05	505.263565801131	42.514	0.20908	42.211	42.04	42.249	-0.30352					5	3	2	0	0	0	0.27462	1	15853	15853		18.146	0	1	2711900			7165	5635	4024	4056	6959	6959					0.008860439694444722
EALVNTVVA	9	Unmodified	_EALVNTVVA_					0	0	0			REV__ENSG00000173930|ENST00000310954|SLCO4C1	REV__ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MSMS	HCT116MG_D190212_S3	3	458.2607727050781	2	458.260925	914.507297	0.22242	0.00010193	-0.54123	-0.00024803	-0.31881	-0.0001461	458.2604968714354	32.194	0.31224	31.916	31.786	32.098	-0.27841					8	5	2	0	0	0	0.16306	1	11816	11816		45.7	3.86	1	8103200	+		7166	13463	4025	4057	6960	6960					0.04662365177625816
EALVNTVVA	9	Unmodified	_EALVNTVVA_					0	0	0			REV__ENSG00000173930|ENST00000310954|SLCO4C1	REV__ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	458.260925	914.507297	0.21188	9.7095E-05	0.56314	0.00025806	0.77501	0.00035516	458.26099764861135	32.146	0.36336	31.916	31.735	32.098	-0.23009	0.00035758	0.00059991	NaN	45.7	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21917000	+		7167	13463	4025	4057							0.04662365177625816
EALVNTVVA	9	Unmodified	_EALVNTVVA_					0	0	0			REV__ENSG00000173930|ENST00000310954|SLCO4C1	REV__ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	458.260925	914.507297	0.22242	0.00010193	-0.54123	-0.00024803	-0.31881	-0.0001461	458.2604968714354	32.194	0.31224	31.916	31.786	32.098	-0.27841	-0.00035758	-0.00041227	NaN	45.7	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8103200	+		7168	13463	4025	4057							0.04662365177625816
EALYLPPD	8	Unmodified	_EALYLPPD_					0	0	0			REV__ENST00000325147.13_1_11:203487-204003:-|nuORF	REV__ENST00000325147.13_1_11:203487-204003:-|nuORF	MSMS	HCT116MG_D190212_S2	2	459.25750732421875	2	459.234376	916.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.738	1	30.471	29.971	30.971	-0.26704								0	0	0	0.74658	1	11313	11313		26.884	0	1		+		7169	14901	4026	4058	6961	6961					-0.007370126050432191
EAMFESAEL	9	Oxidation (M)	_EAM(Oxidation (M))FESAEL_		EAM(1)FESAEL		EAM(42)FESAEL	0	0	1			REV__UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	REV__UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1042.439208984375	1	1042.43975	1041.43248	0.98816	0.0010301	-0.75948	-0.00079171	0.22869	0.00023839	1042.4386115066359	44.785	0.31148	44.7	44.535	44.846	-0.084801					14	5	3	0	0	0	0.19218	1	17010	17010		42.095	18.946	1	53514000	+		7170	11157	4027	4059	6962	6962		151			-0.0865818541592489
EAMFESAEL	9	Oxidation (M)	_EAM(Oxidation (M))FESAEL_					0	0	1			REV__UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	REV__UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	1042.43975	1041.43248	0.63146	0.00065826	0.29459	0.00030709	0.92604	0.00096535	1042.439615933537	45.106	0.19419	44.733	44.586	44.78	-0.37266	0.019801	0.00075124	NaN	42.095	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3660200	+		7171	11157	4027	4059				151			-0.0865818541592489
EAMQGSKWQL	10	Unmodified	_EAMQGSKWQL_					0	0	0			REV__DNER|p.H626Q|1|0.33|ENSG00000187957|chr2:229367097-229367097|G/T|missense_variant	REV__DNER|p.H626Q|1|0.33|ENSG00000187957|chr2:229367097-229367097|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	589.2855224609375	2	589.287148	1176.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.062	1	15.062	14.562	15.562	0								0	0	0	0.93711	1	4977	4977		7.609	1.8255	1		+		7172	10395	4028	4060	6963	6963					-0.02147419751054258
EAMRPPPPP	9	Oxidation (M)	_EAM(Oxidation (M))RPPPPP_		EAM(1)RPPPPP		EAM(66)RPPPPP	0	0	1			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-MSMS	HCT116MG_D190212_S1	1	504.2522888183594	2	504.252577	1006.4906	0.37977	0.0001915	-0.18897	-9.5291E-05	0.1908	9.621E-05	504.25267259202286	21.756	0.52127	21.756	21.489	22.011	0					13	9	2	0	0	0	0.066823	1	7695	7695		66.457	6.3828	1	2942900	+		7173	13887	4029	4061	6964	6964		160			-0.012384589799808055
EAMRPPPPP	9	Oxidation (M)	_EAM(Oxidation (M))RPPPPP_		EAM(1)RPPPPP		EAM(66)RPPPPP	0	0	1			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-MSMS	HCT116MG_D190212_S2	2	504.2532043457031	2	504.252577	1006.4906	0.54679	0.00027572	0.027099	1.3665E-05	0.57389	0.00028939	504.2528249733912	22.189	0.93531	21.804	21.375	22.31	-0.38516					29	17	3	0	0	0	0.066823	1	7865	7865		66.457	14.827	1	13723000	+		7174	13887	4029	4061	6965	6965		160			-0.012384589799808055
EAMRPPPPP	9	Oxidation (M)	_EAM(Oxidation (M))RPPPPP_					0	0	1			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	504.252577	1006.4906	0.37977	0.0001915	-0.18897	-9.5291E-05	0.1908	9.621E-05	504.25267259202286	21.756	0.52127	21.756	21.489	22.011	0	-0.032382	-0.00034103	NaN	66.457	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2942900	+		7175	13887	4029	4061				160			-0.012384589799808055
EAMRPPPPP	9	Unmodified	_EAMRPPPPP_					0	0	0			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-MSMS	HCT116MG_D190212_S2	2	496.2552795410156	2	496.25512	990.495686	0.44281	0.00021975	-0.037903	-1.881E-05	0.40491	0.00020094	496.2551022504005	26.308	1.246	25.946	25.195	26.441	-0.36164					62	23	4	0	0	0	0.066823	2	9409	9409;9649		66.457	14.827	1	138250000	+		7176	13887	4029	4062	6966;6967	6966					5.844882628025516E-05
EAMRPPPPP	9	Unmodified	_EAMRPPPPP_					0	0	0			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-SECPEP	HCT116MG_D190212_S2	2	496.74365234375	2	496.25512	990.495686	0.44281	0.00021975	-0.037903	-1.881E-05	0.40491	0.00020094	496.2551022504005	26.308	1.246	25.946	25.195	26.441	-0.36164					62	23	4	0	0	0	0.099453	1	9484	9484		49.554	0	1	138250000	+		7177	13887	4029	4062	6968	6968					5.844882628025516E-05
EAMRPPPPP	9	Unmodified	_EAMRPPPPP_					0	0	0			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-MSMS	HCT116MG_D190212_S3	3	496.25439453125	2	496.25512	990.495686	0.43778	0.00021725	-0.17507	-8.6878E-05	0.26272	0.00013038	496.25500654631844	26.17	1.5625	26.042	25.286	26.849	-0.12795					69	29	4	0	0	0	0.10244	2	9179	9179;9288		57.722	13.95	1	62443000	+		7178	13887	4029	4062	6969;6970	6969					5.844882628025516E-05
EAMRPPPPP	9	Unmodified	_EAMRPPPPP_					0	0	0			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-SECPEP	HCT116MG_D190212_S3	3	496.7379150390625	2	496.25512	990.495686	0.43778	0.00021725	-0.17507	-8.6878E-05	0.26272	0.00013038	496.25500654631844	26.17	1.5625	26.042	25.286	26.849	-0.12795					69	29	4	0	0	0	0.22011	1	9613	9613		11.495	0	1	62443000	+		7179	13887	4029	4062	6971	6971					5.844882628025516E-05
EAMRPPPPP	9	Unmodified	_EAMRPPPPP_					0	0	0			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-MSMS	HCT116MG_D190212_S4	4	496.2552490234375	2	496.25512	990.495686	0.34393	0.00017068	0.20154	0.00010001	0.54547	0.00027069	496.25515945982454	26.352	1.0924	26.052	25.401	26.493	-0.30087					39	20	3	0	0	0	0.10244	1	9325	9325		57.722	6.0922	1	16249000	+		7180	13887	4029	4062	6972	6972					5.844882628025516E-05
EAMRPPPPP	9	Unmodified	_EAMRPPPPP_					0	0	0			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-SECPEP	HCT116MG_D190212_S4	4	496.2880859375	2	496.25512	990.495686	0.34393	0.00017068	0.20154	0.00010001	0.54547	0.00027069	496.25515945982454	26.352	1.0924	26.052	25.401	26.493	-0.30087					39	20	3	0	0	0	0.12947	1	9292	9292		47.749	5.9091	1	16249000	+		7181	13887	4029	4062	6973	6973					5.844882628025516E-05
EAMRPPPPP	9	Unmodified	_EAMRPPPPP_					0	0	0			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	496.25512	990.495686	0.45609	0.00022634	-0.15283	-7.5841E-05	0.30326	0.0001505	496.25501979339737	26.021	0.78343	26.021	25.457	26.24	0	0.0055122	-9.2643E-05	NaN	66.457	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11719000	+		7182	13887	4029	4062							5.844882628025516E-05
EAMVAREKEA	10	Unmodified	_EAMVAREKEA_					0	0	0			REV__ENSG00000083535|ENST00000326291|PIBF1	REV__ENSG00000083535|ENST00000326291|PIBF1	MULTI-MSMS	HCT116MG_D190212_S3	3	567.2847290039062	2	567.284605	1132.55466	0.27975	0.0001587	-0.12841	-7.2843E-05	0.15134	8.5854E-05	567.2845693713232	20.914	0.31225	20.949	20.818	21.131	0.034473					15	5	4	0	0	0	0.57664	1	7303	7303		29.841	0	1	34366000	+		7183	10905	4030	4063	6974	6974					-0.006317236136965221
EAMVPCYSYGQ	11	Unmodified	_EAMVPCYSYGQ_					0	0	0		ENST00000469442.5_1_2:85978949-86014010:+|nuORF	ENST00000469442.5_1_2:85978949-86014010:+|nuORF	ENST00000469442.5_1_2:85978949-86014010:+|nuORF	MSMS	HCT116MG_D190212_S2	2	624.2652587890625	2	624.257199	1246.49985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.823	1	28.507	28.007	29.007	-0.31613								0	0	0	0.95273	1	10531	10531		4.897	0.36815	1				7184	8138	4031	4064	6975	6975					-0.11354478476641816
EANEPFARTWA	11	Unmodified	_EANEPFARTWA_					0	0	0			REV__ENST00000396893.6_1_19:37155671-37157688:-|nuORF	REV__ENST00000396893.6_1_19:37155671-37157688:-|nuORF	MSMS	HCT116MG_D190212_S2	2	646.3045654296875	2	646.306926	1290.5993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.388	1	26.026	25.526	26.526	-0.36164								0	0	0	0.84073	1	9545	9545		27.629	6.0918	1		+		7185	15358	4032	4065	6976	6976					-0.034375764759943195
EANERKRT	8	Unmodified	_EANERKRT_					0	0	0			REV__ENSG00000196693|ENST00000359467|ZNF33B	REV__ENSG00000196693|ENST00000359467|ZNF33B	MSMS	HCT116MG_D190212_S1	1	502.097412109375	2	502.267604	1002.52066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.19	1	30.19	29.69	30.69	0								0	0	0	0.8837	1	11063	11063		7.9102	1.187	1		+		7186	14044	4033	4066	6977	6977					0.0194961600956276
EANKEKIN	8	Unmodified	_EANKEKIN_					0	0	0		tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	473.25323486328125	2	473.253631	944.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.837	1	19.462	18.962	19.962	-0.37503								0	0	0	0.8837	1	6901	6901		15.847	1.0089	1				7187	18494	4034	4067	6978	6978					0.018242930294604776
EANLAPTGSP	10	Unmodified	_EANLAPTGSP_					0	0	0			REV__ENST00000556425.2_1_15:21937379-21938108:-|nuORF	REV__ENST00000556425.2_1_15:21937379-21938108:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	479.2901306152344	2	478.737814	955.461075	0.16503	7.9004E-05	-0.1795	-8.5933E-05	-0.014472	-6.9282E-06	478.73777383276513	29.874	0.2067	29.573	29.444	29.65	-0.30095					5	3	2	0	0	0	0.2568	1	10928	10928		32.786	5.902	1	18551000	+		7188	16464	4035	4068	6979	6979					-0.018436997244634767
EANLQALIAT	10	Unmodified	_EANLQALIAT_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;ENSG00000160803|ENST00000368309|UBQLN4;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MSMS	HCT116MG_D190212_S4	4	522.2908325195312	2	522.290214	1042.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.005	1	43.631	43.131	44.131	-0.37373								0	0	0	0.89062	1	16196	16196		17.113	0	1				7189	3322	4036	4069	6980	6980					0.04629421752088092
EANLQEKPTHS	11	Unmodified	_EANLQEKPTHS_					0	0	0		ENST00000487003.5_1_2:135927369-135933054:+|nuORF	ENST00000487003.5_1_2:135927369-135933054:+|nuORF	ENST00000487003.5_1_2:135927369-135933054:+|nuORF	MSMS	HCT116MG_D190212_S4	4	627.3098754882812	2	627.309666	1252.60478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.54	1	17.369	16.869	17.869	-0.17047								0	0	0	0.82357	1	5825	5825		29.841	0	1				7190	8299	4037	4070	6981	6981					-0.011418976841923723
EANPGFFR	8	Unmodified	_EANPGFFR_					0	0	0			REV__ENST00000570116.6_1_16:89962405-89970614:+|nuORF	REV__ENST00000570116.6_1_16:89962405-89970614:+|nuORF	MSMS	HCT116MG_D190212_S3	3	469.2279968261719	2	469.229959	936.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.503	1	37.202	36.702	37.702	-0.30137								0	0	0	0.8837	1	13894	13894		12.532	3.1841	1		+		7191	12321	4038	4071	6982	6982					-0.025399414508569862
EANPGFFR	8	Unmodified	_EANPGFFR_					0	0	0			REV__ENST00000570116.6_1_16:89962405-89970614:+|nuORF	REV__ENST00000570116.6_1_16:89962405-89970614:+|nuORF	MSMS	HCT116MG_D190212_S4	4	469.2278747558594	2	469.229959	936.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.271	1	30.901	30.401	31.401	-0.37026								0	0	0	0.8837	1	11342	11342		7.2892	0.56607	1		+		7192	12321	4038	4071	6983	6983					-0.025399414508569862
EANPGFFR	8	Unmodified	_EANPGFFR_					0	0	0			REV__ENST00000570116.6_1_16:89962405-89970614:+|nuORF	REV__ENST00000570116.6_1_16:89962405-89970614:+|nuORF	MSMS	HCT116MG_D190212_S4	4	469.2283020019531	2	469.229959	936.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.546	1	37.162	36.662	37.662	-0.3839								0	0	0	0.8837	1	13782	13782		10.824	2.2306	1		+		7193	12321	4038	4071	6984	6984					-0.025399414508569862
EANPNQRDPP	10	Unmodified	_EANPNQRDPP_					0	0	0		nc|ENSG00000128524|Q16864-2|ATP6V1F	nc|ENSG00000128524|Q16864-2|ATP6V1F	nc|ENSG00000128524|Q16864-2|ATP6V1F	MULTI-SECPEP	HCT116MG_D190212_S3	3	568.7822265625	2	569.267801	1136.52105	0.48296	0.00027493	1.6681	0.00094959	2.1511	0.0012245	569.7716136760284	40.508	0.26003	40.206	40.111	40.371	-0.30161					6	4	2	0	0	0	0.2945	1	15061	15061		11.495	5.2889	1	2962800			7194	9453	4039	4072	6985	6985					-0.041750090612367785
EANSIGNTSP	10	Unmodified	_EANSIGNTSP_					0	0	0			REV__RC3H2|p.F582Mfs*6|1|0.08|ENSG00000056586|chr9:122860022-122860023|-/AAAAGAAACAT|frameshift_variant	REV__RC3H2|p.F582Mfs*6|1|0.08|ENSG00000056586|chr9:122860022-122860023|-/AAAAGAAACAT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	495.23046875	2	495.230353	988.446153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.099	1	22.861	22.361	23.361	-0.23758								0	0	0	0.91638	1	8070	8070		12.241	0	1		+		7195	10654	4040	4073	6986	6986					-0.04853191592474104
EANSKALVVE	10	Unmodified	_EANSKALVVE_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2879638671875	2	530.287671	1058.56079	0.13831	7.3345E-05	0.11806	6.2605E-05	0.25637	0.00013595	530.2878271332183	17.478	0.36412	17.559	17.43	17.794	0.081358					10	6	2	0	0	0	0.53455	1	5899	5899		32.786	2.9451	1	5029100	+		7196	13744	4041	4074	6987	6987					0.03385117889456524
EANSKALVVE	10	Unmodified	_EANSKALVVE_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-MATCH	HCT116MG_D190212_S4	4		2	530.287671	1058.56079	0.23509	0.00012467	-0.15181	-8.0505E-05	0.083277	4.4161E-05	530.7892589277474	17.889	0.15594	17.714	17.584	17.74	-0.17501	0.077029	-0.00024269	NaN	32.786	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1953900	+		7197	13744	4041	4074							0.03385117889456524
EANSKVPWE	9	Unmodified	_EANSKVPWE_					0	0	0		DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	530.2570190429688	2	530.258914	1058.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.469	1	17.55	17.05	18.05	0.081358								0	0	0	0.56943	1	5871	5871		25.399	2.663	1				7198	698	4042	4075	6988	6988					-0.023637243160919752
EAPAGTWHGAA	11	Unmodified	_EAPAGTWHGAA_					0	0	0		ENST00000546567.5_2_12:58158304-58159309:-|nuORF;ENST00000547344.5_1_12:58159078-58160873:-|nuORF;ENST00000547451.1_1_12:58158414-58159309:-|nuORF;CYP27B1|p.L58Afs*275|1|0.23|ENSG00000111012|chr12:57766870-57766871|-/C|frameshift_variant;ENST00000228606.8_1_12:58158304-58160873:-|nuORF	ENST00000546567.5_2_12:58158304-58159309:-|nuORF	ENST00000546567.5_2_12:58158304-58159309:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7507934570312	2	534.24888	1066.48321	0.30698	0.000164	1.0025	0.00053557	1.3094	0.00069957	534.7512470784144	18.05	0.98868	18.127	17.425	18.413	0.076334					40	18	3	0	0	0	0.71776	1	6205	6205		15.248	0.41021	1	11800000			7199	629	4043	4076	6989	6989					-0.04737475256047219
EAPAQDRT	8	Unmodified	_EAPAQDRT_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MSMS	HCT116MG_D190212_S2	2	444.2130432128906	2	444.214506	886.414459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.964	1	29.675	29.175	30.175	-0.2889								0	0	0	0.8837	1	10997	10997		13.508	3.3245	1				7200	4491	4044	4077	6990	6990					-0.03329139555762595
EAPDQGQWP	9	Unmodified	_EAPDQGQWP_					0	0	0			REV__PASK|p.G604Afs*4|1|0.43|ENSG00000115687|chr2:241127104-241127104|C/-|frameshift_variant	REV__PASK|p.G604Afs*4|1|0.43|ENSG00000115687|chr2:241127104-241127104|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	514.229736328125	2	514.227613	1026.44067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.827	1	30.567	30.067	31.067	-0.26071								0	0	0	0.46109	1	11240	11240		30.637	3.0077	1		+		7201	11555	4045	4078	6991	6991					-0.07148870384276051
EAPDRDKDAP	10	Unmodified	_EAPDRDKDAP_					0	0	0		TNFRSF13C|p.G119R|1|0.08|ENSG00000159958|chr22:41926113-41926113|C/T|missense_variant	TNFRSF13C|p.G119R|1|0.08|ENSG00000159958|chr22:41926113-41926113|C/T|missense_variant	TNFRSF13C|p.G119R|1|0.08|ENSG00000159958|chr22:41926113-41926113|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7615966796875	2	557.262185	1112.50982	0.30561	0.0001703	-1.2404	-0.00069124	-0.93481	-0.00052094	557.7618629258164	21.313	0.57041	20.93	20.443	21.013	-0.38288					21	10	3	0	0	0	0.55624	1	7524	7524		31.268	2.7738	1	19880000			7202	18278	4046	4079	6992	6992					-0.04193831155384942
EAPELLLLPHH	11	Unmodified	_EAPELLLLPHH_					0	0	0		CH25H|p.L125P|1|0.22|ENSG00000138135|chr10:89206919-89206919|A/G|missense_variant	CH25H|p.L125P|1|0.22|ENSG00000138135|chr10:89206919-89206919|A/G|missense_variant	CH25H|p.L125P|1|0.22|ENSG00000138135|chr10:89206919-89206919|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	423.5704040527344	3	423.571434	1267.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9746	1	9.9746	9.4746	10.475	0								0	0	0	0.95665	1	3042	3042		2.8433	0.21205	1				7203	422	4047	4080	6993	6993					0.0693334797724674
EAPEYLDL	8	Unmodified	_EAPEYLDL_					0	0	0		ENST00000510003.5_1_5:121726829-121776497:+|nuORF;nc|ENSG00000064692|Q9Y6H5-6|SNCAIP;nc|ENSG00000064692|Q9Y6H5-4|SNCAIP;ENSG00000064692|ENST00000261368|SNCAIP;nc|ENSG00000064692|Q9Y6H5-3|SNCAIP	ENST00000510003.5_1_5:121726829-121776497:+|nuORF	ENST00000510003.5_1_5:121726829-121776497:+|nuORF	MSMS	HCT116MG_D190212_S1	1	475.227783203125	2	475.22929	948.444028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.795	1	24.795	24.295	25.295	0								0	0	0	0.8396	1	8892	8892		19.439	2.4967	1				7204	1141	4048	4081	6994	6994					-0.0322562033027225
EAPGHTSSP	9	Unmodified	_EAPGHTSSP_					0	0	0			REV__ENSG00000135587|ENST00000258052|SMPD2	REV__ENSG00000135587|ENST00000258052|SMPD2	MSMS	HCT116MG_D190212_S2	2	441.7012939453125	2	441.701232	881.38791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.437	1	16.096	15.596	16.596	-0.34183								0	0	0	0.42657	1	5531	5531		32.305	14.171	1		+		7205	12099	4049	4082	6995	6995					-0.05752828447089087
EAPGPGFARAP	11	Unmodified	_EAPGPGFARAP_					0	0	0			REV__nc|ENSG00000161835|Q7Z6J2-2|TAMALIN	REV__nc|ENSG00000161835|Q7Z6J2-2|TAMALIN	MSMS	HCT116MG_D190212_S2	2	535.2735595703125	2	535.274898	1068.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.798	1	17.441	16.941	17.941	-0.35647								0	0	0	0.49457	1	6079	6079		47.749	11.622	1		+		7206	12859	4050	4083	6996	6996					0.0037168815770201036
EAPHLVHVDAA	11	Unmodified	_EAPHLVHVDAA_					0	0	0		ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000508168.5_1_4:980866-994923:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF;ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000504568.5_1_4:980881-994673:+|nuORF	ENST00000504568.5_1_4:980881-994673:+|nuORF	MSMS	HCT116MG_D190212_S2	2	386.8683166503906	3	386.86825	1157.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.965	1	30.698	30.198	31.198	-0.26704								0	0	0	0.35655	1	11404	11404		49.742	13.746	1				7207	2963	4051	4084	6997	6997					0.010433423579115697
EAPLHLDP	8	Unmodified	_EAPLHLDP_					0	0	0			REV__ENSG00000078618|ENST00000352171|NRDC	REV__ENSG00000078618|ENST00000352171|NRDC	MSMS	HCT116MG_D190212_S3	3	446.2322998046875	2	446.232168	890.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.515	1	20.549	20.049	21.049	0.034473								0	0	0	0.8396	1	7099	7099		19.439	0	1		+		7208	10838	4052	4085	6998	6998					0.0001752297204120623
EAPLTPSLVP	10	Unmodified	_EAPLTPSLVP_					0	0	0			REV__nc|ENSG00000272886|Q9NPI6-2|DCP1A	REV__nc|ENSG00000272886|Q9NPI6-2|DCP1A	MSMS	HCT116MG_D190212_S3	3	512.289794921875	2	512.289682	1022.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.253	1	41.95	41.45	42.45	-0.30352								0	0	0	0.90023	1	15735	15735		15.847	0.078963	1		+		7209	14445	4053	4086	6999	6999					0.05443207383200388
EAPNQEKVSDY	11	Unmodified	_EAPNQEKVSDY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S1	1	640.2941284179688	2	640.293682	1278.57281	0.64481	0.00041287	0.14821	9.4896E-05	0.79302	0.00050777	640.2937568672835	43.27	0.36447	43.27	43.056	43.42	0					17	6	4	0	0	0	0.57136	1	16332	16332		38.615	15.957	1	65277000			7210	3198	4054	4087	7000	7000					-0.05533310157966298
EAPNQEKVSDY	11	Unmodified	_EAPNQEKVSDY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S2	2	1279.5819091796875	1	1279.58009	1278.57281	0.20827	0.00026649	0.31632	0.00040476	0.52459	0.00067125	1279.5804117428306	43.323	0.36124	43.25	43.097	43.458	-0.073376					16	6	3	0	0	0	0.63066	1	16424	16424		32.037	2.1969	1	63993000			7211	3198	4054	4087	7001	7001					-0.05533310157966298
EAPNQEKVSDY	11	Unmodified	_EAPNQEKVSDY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1279.58009	1278.57281	0.61561	0.00078772	-0.032729	-4.188E-05	0.58288	0.00074584	1279.580194039668	43.262	0.15651	43.262	43.16	43.316	0	0.0061709	-0.00036307	NaN	32.037	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10025000			7212	3198	4054	4087							-0.05533310157966298
EAPNQEKVSDY	11	Unmodified	_EAPNQEKVSDY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	640.293682	1278.57281	0.59862	0.00038329	-0.12864	-8.2366E-05	0.46998	0.00030092	640.2941754800628	43.52	0.31212	43.214	43.032	43.344	-0.30616	-0.039941	-0.00052942	NaN	38.615	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5248000			7213	3198	4054	4087							-0.05533310157966298
EAPPHIFSIYD	11	Unmodified	_EAPPHIFSIYD_					0	0	0		MYH1|p.S159Y|1|0.09|ENSG00000109061|chr17:10515955-10515955|G/T|missense_variant	MYH1|p.S159Y|1|0.09|ENSG00000109061|chr17:10515955-10515955|G/T|missense_variant	MYH1|p.S159Y|1|0.09|ENSG00000109061|chr17:10515955-10515955|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	644.7610473632812	2	644.814053	1287.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.111	1	40.111	39.611	40.611	0								0	0	0	0.93626	1	15066	15066		12.241	1.4167	1				7214	9349	4055	4088	7002	7002					-0.018749240477063722
EAPPPLPPPP	10	Unmodified	_EAPPPLPPPP_					0	0	0			REV__NCOR1|p.P615A|1|0.19|ENSG00000141027|chr17:16121061-16121061|G/C|missense_variant	REV__NCOR1|p.P615A|1|0.19|ENSG00000141027|chr17:16121061-16121061|G/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	506.2806701660156	2	506.279118	1010.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.392	1	31.122	30.622	31.622	-0.27028								0	0	0	0.91906	1	11467	11467		11.64	0	1		+		7215	17341	4056	4089	7003	7003					0.03883242074323334
EAPPPPPPP	9	Unmodified	_EAPPPPPPP_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4;REV__nc|ENSG00000172216|P17676-2|CEBPB	REV__ENSG00000109920|ENST00000263773|FNBP4	MSMS	HCT116MG_D190212_S1	1	449.73590087890625	2	449.737086	897.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.928	1	24.928	24.428	25.428	0								0	0	0	0.073702	1	8945	8945		63.563	0	1		+		7216	11385;13379	4057	4090	7004	7004					0.006787109774222699
EAPPPPPPP	9	Unmodified	_EAPPPPPPP_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4;REV__nc|ENSG00000172216|P17676-2|CEBPB	REV__ENSG00000109920|ENST00000263773|FNBP4	MULTI-MSMS	HCT116MG_D190212_S2	2	449.7374572753906	2	449.737086	897.459619	0.18558	8.3464E-05	0.014267	6.4166E-06	0.19985	8.9881E-05	449.7370539587124	25.309	0.98765	24.934	24.4	25.388	-0.37521					27	18	2	0	0	0	0.058138	1	9068	9068		70.716	0	1	7290900	+		7217	11385;13379	4057	4090	7005	7005					0.006787109774222699
EAPRAKVPEA	10	Unmodified	_EAPRAKVPEA_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2962646484375	2	534.29583	1066.57711	0.72328	0.00038645	-0.10513	-5.6172E-05	0.61815	0.00033027	534.295603672283	33.649	0.67271	33.456	32.966	33.639	-0.19297					30	12	3	0	0	0	0.21913	1	12439	12439		57.722	15.766	1	67739000			7218	4258	4058	4091	7006	7006					0.04648243846236255
EAPRASPPP	9	Unmodified	_EAPRASPPP_					0	0	0		ENST00000594851.5_1_19:16466176-16466506:-|nuORF	ENST00000594851.5_1_19:16466176-16466506:-|nuORF	ENST00000594851.5_1_19:16466176-16466506:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	462.1466369628906	2	461.243067	920.47158	0.15724	7.2524E-05	0.10542	4.8623E-05	0.26265	0.00012115	461.24304693958896	21.015	0.93873	20.632	20.127	21.065	-0.38288					32	17	2	0	0	0	0.59184	1	7272	7272		11.64	1.4569	1	9338000			7219	9057	4059	4092	7007	7007					0.008163277206108432
EAPRSALFN	9	Unmodified	_EAPRSALFN_					0	0	0			REV__ENSG00000115993|ENST00000332624|TRAK2	REV__ENSG00000115993|ENST00000332624|TRAK2	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7614440917969	2	502.761623	1003.50869	0.28987	0.00014574	-1.1891	-0.00059783	-0.89922	-0.00045209	502.7617307812392	21.323	0.88996	21.341	20.698	21.588	0.018446					31	16	4	0	0	0	0.47809	1	7355	7355		18.146	5.6148	1	5541500	+		7220	11567	4060	4093	7008	7008					0.007079992663648227
EAPSARGEADC	11	Unmodified	_EAPSARGEADC_					0	0	0			REV__nc|ENSG00000188883|A4D1S0-2|KLRG2	REV__nc|ENSG00000188883|A4D1S0-2|KLRG2	MULTI-MSMS	HCT116MG_D190212_S4	4	553.7689819335938	2	553.23257	1104.45059	0.42892	0.00023729	-0.5191	-0.00028719	-0.090185	-4.9893E-05	553.2328317548852	29.96	0.46807	29.603	29.337	29.805	-0.3571					11	8	2	0	0	0	0.7259	1	10783	10783		12.241	0	1	1779600	+		7221	13977	4061	4094	7009	7009					-0.09746050441208354
EAPSMLHSELN	11	Unmodified	_EAPSMLHSELN_					0	0	0			REV__nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	REV__nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	613.786376953125	2	614.287345	1226.56014	0.40806	0.00025067	1.4734	0.00090509	1.8815	0.0011558	614.2877369219045	23.657	0.31184	23.274	23.091	23.403	-0.38324					8	5	2	0	0	0	0.3256	1	8468	8468		18.373	0	1	11470000	+		7222	13810	4062	4095	7010	7010					-0.04408044821866497
EAPSPPPAPP	10	Unmodified	_EAPSPPPAPP_					0	0	0			REV__ENSG00000283683|ENST00000637642|MYOCOS	REV__ENSG00000283683|ENST00000637642|MYOCOS	MULTI-MSMS	HCT116MG_D190212_S3	3	480.24542236328125	2	480.245275	958.475997	0.27817	0.00013359	-0.30239	-0.00014522	-0.024219	-1.1631E-05	480.2453006615801	26.792	2.343	26.642	26.255	28.598	-0.14924					70	44	2	0	0	0	0.34998	1	9804	9804		46.021	3.9264	1	8890600	+		7223	14479	4063	4096	7011	7011					-0.004902078564896328
EAPSRPPSAPT	11	Unmodified	_EAPSRPPSAPT_					0	0	0			REV__nc|ENSG00000138162|O95359-6|TACC2	REV__nc|ENSG00000138162|O95359-6|TACC2	MULTI-MSMS	HCT116MG_D190212_S2	2	370.1888122558594	3	370.524372	1108.55129	-0.22454	-8.3198E-05	-1.1926	-0.0004419	-1.4172	-0.0005251	370.5238468218366	23.605	0.77978	23.222	22.78	23.56	-0.38324					30	14	4	0	0	0	0.69464	1	8391	8391		14.838	0	1	100830000	+		7224	12214	4064	4097	7012	7012					0.001353496039428137
EAPVWPSWQP	10	Unmodified	_EAPVWPSWQP_					0	0	0			REV__ENST00000468248.5_1_20:34204975-34205587:+|nuORF	REV__ENST00000468248.5_1_20:34204975-34205587:+|nuORF	MSMS	HCT116MG_D190212_S2	2	598.7886352539062	2	598.790381	1195.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.962	1	16.617	16.117	17.117	-0.34565								0	0	0	0.84701	1	5743	5743		22.736	4.3632	1		+		7225	15803	4065	4098	7013	7013					-0.02375158528047905
EAPYKNGQP	9	Unmodified	_EAPYKNGQP_					0	0	0		CRISPLD2|p.R216Q|1|0.33|ENSG00000103196|chr16:84854767-84854767|G/A|missense_variant	CRISPLD2|p.R216Q|1|0.33|ENSG00000103196|chr16:84854767-84854767|G/A|missense_variant	CRISPLD2|p.R216Q|1|0.33|ENSG00000103196|chr16:84854767-84854767|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	502.24639892578125	2	502.245806	1002.47706	0.35606	0.00017883	0.39548	0.00019863	0.75154	0.00037746	502.2460892549422	21.151	0.20778	20.941	20.811	21.019	-0.20959					5	3	2	0	0	0	0.24622	1	7298	7298		16.942	6.1184	1	2257000			7226	600	4066	4099	7014	7014					-0.024079934875658182
EAQAEVQSVP	10	Unmodified	_EAQAEVQSVP_					0	0	0		ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	MSMS	HCT116MG_D190212_S4	4	529.2615356445312	2	529.261653	1056.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.684	1	27.363	26.863	27.863	-0.32157								0	0	0	0.89062	1	9922	9922		17.113	0.1706	1				7227	4671	4067	4100	7015	7015					-0.01724045524269968
EAQASRLLP	9	Unmodified	_EAQASRLLP_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-SECPEP	HCT116MG_D190212_S3	3	492.1978454589844	2	492.777274	983.539994	0.44646	0.00022001	-0.63921	-0.00031499	-0.19275	-9.4982E-05	492.7770530742059	35.72	0.49393	35.421	35.289	35.783	-0.29922					22	15	2	0	0	0	0.2458	1	13283	13283		13.042	0	1	11630000	+		7228	10843	4068	4101	7016	7016					0.04756572300470907
EAQATNEPGAP	11	Unmodified	_EAQATNEPGAP_					0	0	0			REV__ZNFX1|p.R900Efs*2|2|0.38|ENSG00000124201|chr20:49255914-49255914|T/-|frameshift_variant	REV__ZNFX1|p.R900Efs*2|2|0.38|ENSG00000124201|chr20:49255914-49255914|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	542.74853515625	2	542.74891	1083.48327	0.14348	7.7876E-05	0.23119	0.00012548	0.37467	0.00020335	542.7490654260492	17.582	0.41616	17.664	17.482	17.898	0.081358					10	7	2	0	0	0	0.60456	1	5942	5942		34.932	2.0343	1	2870200	+		7229	11779	4069	4102	7017	7017					-0.05513520046724807
EAQATNEPGAP	11	Unmodified	_EAQATNEPGAP_					0	0	0			REV__ZNFX1|p.R900Efs*2|2|0.38|ENSG00000124201|chr20:49255914-49255914|T/-|frameshift_variant	REV__ZNFX1|p.R900Efs*2|2|0.38|ENSG00000124201|chr20:49255914-49255914|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	542.74891	1083.48327	0.14348	7.7876E-05	0.23119	0.00012548	0.37467	0.00020335	542.7490654260492	17.582	0.41616	17.664	17.482	17.898	0.081358	0	0	NaN	34.932	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2870200	+		7230	11779	4069	4102							-0.05513520046724807
EAQDLFRD	8	Unmodified	_EAQDLFRD_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MSMS	HCT116MG_D190212_S2	2	497.23443603515625	2	497.235439	992.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.697	1	11.415	10.915	11.915	-0.28186								0	0	0	0.87079	1	3784	3784		16.942	0	1				7231	1911	4070	4103	7018	7018					-0.04020583867247751
EAQENYIP	8	Unmodified	_EAQENYIP_					0	0	0		CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant;ENSG00000165813|ENST00000369287|CCDC186;CCDC186|p.R62Q|1|0.34|ENSG00000165813|chr10:114163084-114163084|C/T|missense_variant	CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant	CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	482.2265625	2	482.224539	962.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.087	1	28.747	28.247	29.247	-0.34059								0	0	0	0.8837	1	10489	10489		13.508	1.8676	1				7232	348	4071	4104	7019	7019					-0.048193886158060195
EAQFSCEQQ	9	Unmodified	_EAQFSCEQQ_					0	0	0		ENST00000446119.2_1_17:60759570-60767382:+|nuORF;MRC2|p.G1219Afs*5|1|0.25|ENSG00000011028|chr17:62689971-62689971|G/-|frameshift_variant;ENSG00000011028|ENST00000303375|MRC2	ENST00000446119.2_1_17:60759570-60767382:+|nuORF	ENST00000446119.2_1_17:60759570-60767382:+|nuORF	MSMS	HCT116MG_D190212_S1	1	357.14788818359375	3	357.146684	1068.41822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.401	1	34.401	33.901	34.901	0								0	0	0	0.76973	1	12763	12763		0.96228	0	1				7233	885	4072	4105	7020	7020					-0.11324837844199465
EAQGLEALIA	10	Unmodified	_EAQGLEALIA_					0	0	0		ENSG00000138823|ENST00000265517|MTTP	ENSG00000138823|ENST00000265517|MTTP	ENSG00000138823|ENST00000265517|MTTP	MULTI-MSMS	HCT116MG_D190212_S4	4	507.77685546875	2	507.776939	1013.53933	0.27248	0.00013836	0.11406	5.7919E-05	0.38654	0.00019628	507.7771080675196	46.342	0.1609	45.971	45.941	46.102	-0.37134					9	5	2	0	0	0	0.052106	1	17127	17127		85.642	6.9135	1	5330500			7234	3594	4073	4106	7021	7021					0.03309732860748227
EAQGPAGAP	9	Unmodified	_EAQGPAGAP_					0	0	0		COL4A6|p.G521E|1|0.16|ENSG00000197565|chrX:108188545-108188545|C/T|missense_variant	COL4A6|p.G521E|1|0.16|ENSG00000197565|chrX:108188545-108188545|C/T|missense_variant	COL4A6|p.G521E|1|0.16|ENSG00000197565|chrX:108188545-108188545|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	797.378662109375	1	797.378808	796.371532	0.72673	0.00057948	0.020421	1.6283E-05	0.74715	0.00059576	797.3788242268422	19.612	0.52095	19.672	19.438	19.959	0.05983					13	9	2	0	0	0	0.020353	1	6748	6748		96.111	6.6841	1	4748900			7235	526	4074	4107	7022	7022					-0.03479909613190557
EAQKKDAEA	9	Unmodified	_EAQKKDAEA_					0	0	0			REV__nc|ENSG00000198467|P07951-2|TPM2	REV__nc|ENSG00000198467|P07951-2|TPM2	MULTI-MSMS	HCT116MG_D190212_S2	2	495.24859619140625	2	495.248546	988.482539	0.27075	0.00013409	0.18913	9.3667E-05	0.45989	0.00022776	495.24838756389715	16.259	0.20915	15.924	15.794	16.003	-0.33451					8	3	3	0	0	0	0.061422	1	5482	5482		69.105	6.5322	1	10554000	+	+	7236	10269	4075	4108	7023	7023					-0.012163146957732351
EAQKQSLP	8	Unmodified	_EAQKQSLP_					0	0	0			REV__nc|ENSG00000089053|Q9UJX4-2|ANAPC5	REV__nc|ENSG00000089053|Q9UJX4-2|ANAPC5	MULTI-MSMS	HCT116MG_D190212_S4	4	450.74285888671875	2	450.742899	899.471246	0.20735	9.3463E-05	0.11243	5.0677E-05	0.31978	0.00014414	450.74287456163455	23.232	1.2507	22.985	22.853	24.103	-0.24775					34	23	2	0	0	0	0.1772	1	8151	8151		78.149	3.7266	1	7670200	+		7237	10966	4076	4109	7024	7024					0.017489080007635494
EAQLAHLIP	9	Unmodified	_EAQLAHLIP_					0	0	0		nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4;nc|ENSG00000134627|Q7Z3Z4-2|PIWIL4;PIWIL4|p.V774Wfs*21|1|0.16|ENSG00000134627|chr11:94620021-94620021|G/-|frameshift_variant;ENSG00000134627|ENST00000299001|PIWIL4	nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	MSMS	HCT116MG_D190212_S3	3	496.2828369140625	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.574	1	42.27	41.77	42.77	-0.30352								0	0	0	0.50556	1	15864	15864		28.487	6.7402	1				7238	3295	4077	4110	7025	7025					0.054177603058633395
EAQLARPPPP	10	Unmodified	_EAQLARPPPP_					0	0	0			REV__nc|ENSG00000081985|Q99665-3|IL12RB2	REV__nc|ENSG00000081985|Q99665-3|IL12RB2	MULTI-SECPEP	HCT116MG_D190212_S1	1	359.02838134765625	3	359.201341	1074.58219	-0.12834	-4.6099E-05	0.051056	1.8339E-05	-0.077281	-2.776E-05	359.20131852287795	16.224	0.41653	16.224	16.056	16.473	0					10	7	2	0	0	0	0.31054	1	5502	5502		6.6304	0	1	920490	+		7239	10883	4078	4111	7026	7026					0.04788547708835722
EAQLQEPS	8	Unmodified	_EAQLQEPS_					0	0	0		ENST00000558362.5_1_15:45670204-45670582:-|nuORF	ENST00000558362.5_1_15:45670204-45670582:-|nuORF	ENST00000558362.5_1_15:45670204-45670582:-|nuORF	MSMS	HCT116MG_D190212_S4	4	451.21728515625	2	451.216714	900.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.831	1	35.445	34.945	35.945	-0.38606								0	0	0	0.8837	1	13090	13090		3.9444	0	1				7240	8801	4079	4112	7027	7027					-0.035316751328537066
EAQNSHVYWWR	11	Unmodified	_EAQNSHVYWWR_					0	0	0		ENSG00000004142|ENST00000540200|POLDIP2	ENSG00000004142|ENST00000540200|POLDIP2	ENSG00000004142|ENST00000540200|POLDIP2	MSMS	HCT116MG_D190212_S4	4	492.58209228515625	3	492.565342	1474.6742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.319	1	21.107	20.607	21.607	-0.21165								0	0	0	0.95113	1	7352	7352		2.6312	0	1				7241	799	4080	4113	7028	7028					-0.044153939447824087
EAQPAAASPRQ	11	Unmodified	_EAQPAAASPRQ_					0	0	0			REV__ENSG00000075856|ENST00000546815|SART3	REV__ENSG00000075856|ENST00000546815|SART3	MULTI-MSMS	HCT116MG_D190212_S2	2	375.85968017578125	3	375.859755	1124.55744	-0.26755	-0.00010056	0.12669	4.7619E-05	-0.14086	-5.2944E-05	375.8598161804724	21.459	0.25979	21.076	20.961	21.221	-0.38288					6	4	2	0	0	0	0.70377	1	7587	7587		12.228	0	1	12427000	+		7242	10814	4081	4114	7029	7029					0.00013867835446035315
EAQPPGCSPAT	11	Unmodified	_EAQPPGCSPAT_					0	0	0		ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant	ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant	ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	529.23486328125	2	529.234581	1056.45461	0.46893	0.00024817	-0.022559	-1.1939E-05	0.44637	0.00023623	529.2346049310669	34.035	0.26045	33.741	33.559	33.819	-0.29419					8	4	2	0	0	0	0.70377	1	12501	12501		20.415	3.4722	1	6546600			7243	173	4082	4115	7030	7030					-0.07135960947516651
EAQPPGCSPAT	11	Unmodified	_EAQPPGCSPAT_					0	0	0		ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant	ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant	ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	529.234581	1056.45461	0.54157	0.00028662	0.28709	0.00015194	0.82866	0.00043855	529.234608015415	34.03	0.31167	33.646	33.517	33.829	-0.38426	-0.047671	0.00030745	NaN	20.415	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2406300			7244	173	4082	4115							-0.07135960947516651
EAQQAQSPQ	9	Unmodified	_EAQQAQSPQ_					0	0	0		ENSG00000214102|ENST00000397541|WEE2	ENSG00000214102|ENST00000397541|WEE2	ENSG00000214102|ENST00000397541|WEE2	MSMS	HCT116MG_D190212_S3	3	493.73138427734375	2	493.73052	985.446488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.556	1	16.642	16.142	17.142	0.085424								0	0	0	0.71946	1	5502	5502		18.146	0.011366	1				7245	6430	4083	4116	7031	7031					-0.04681771872617446
EAQQPQPQ	8	Unmodified	_EAQQPQPQ_					0	0	0		ENSG00000079432|ENST00000681038|CIC;CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant;CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant;CIC|p.E1288Gfs*56|1|0.3|ENSG00000079432|chr19:42293654-42293655|-/G|frameshift_variant;CIC|p.P518Rfs*5|2|0.37|ENSG00000079432|chr19:42290317-42290317|C/-|frameshift_variant;CIC|p.P509Hfs*14|2|0.27|ENSG00000079432|chr19:42290289-42290289|C/-|frameshift_variant;CIC|p.A785Pfs*139|1|0.34|ENSG00000079432|chr19:42291117-42291117|G/-|frameshift_variant	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	HCT116MG_D190212_S3	3	463.7261047363281	2	463.222331	924.430109	0.10314	4.7776E-05	1.895	0.00087782	1.9982	0.00092559	463.22232951864885	17.751	0.57232	17.833	17.534	18.106	0.081358					27	10	3	0	0	0	0.58007	1	5940	5940		34.102	0	1	9922000			7246	1381	4084	4117	7032	7032					-0.03512853038716912
EAQREAASVP	10	Unmodified	_EAQREAASVP_					0	0	0		ENST00000528167.1_1_4:8442537-8448315:+|nuORF;ENSG00000155275|ENST00000389737|TRMT44	ENST00000528167.1_1_4:8442537-8448315:+|nuORF	ENST00000528167.1_1_4:8442537-8448315:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2672119140625	2	529.26727	1056.51999	0.41333	0.00021876	0.25279	0.00013379	0.66611	0.00035255	529.2673340010265	19.424	0.41648	19.484	19.178	19.594	0.05983					11	7	2	0	0	0	0.76634	1	6602	6602		14.838	1.7958	1	1915800			7247	4246	4085	4118	7033	7033					-0.006012234301579156
EAQREAASVP	10	Unmodified	_EAQREAASVP_					0	0	0		ENST00000528167.1_1_4:8442537-8448315:+|nuORF;ENSG00000155275|ENST00000389737|TRMT44	ENST00000528167.1_1_4:8442537-8448315:+|nuORF	ENST00000528167.1_1_4:8442537-8448315:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	529.26727	1056.51999	0.35753	0.00018923	-0.89844	-0.00047552	-0.54091	-0.00028629	529.2664595350301	20.074	0.36345	19.699	19.506	19.869	-0.37503	0.10767	-0.0011423	NaN	14.838	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3622200			7248	4246	4085	4118							-0.006012234301579156
EAQREAASVP	10	Unmodified	_EAQREAASVP_					0	0	0		ENST00000528167.1_1_4:8442537-8448315:+|nuORF;ENSG00000155275|ENST00000389737|TRMT44	ENST00000528167.1_1_4:8442537-8448315:+|nuORF	ENST00000528167.1_1_4:8442537-8448315:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	529.26727	1056.51999	0.41333	0.00021876	0.25279	0.00013379	0.66611	0.00035255	529.2673340010265	19.424	0.41648	19.484	19.178	19.594	0.05983	-0.10767	7.6312E-05	NaN	14.838	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1915800			7249	4246	4085	4118							-0.006012234301579156
EAQRGSLAE	9	Unmodified	_EAQRGSLAE_					0	0	0		ENST00000471919.1_1_6:116981518-116989864:-|nuORF	ENST00000471919.1_1_6:116981518-116989864:-|nuORF	ENST00000471919.1_1_6:116981518-116989864:-|nuORF	MSMS	HCT116MG_D190212_S2	2	480.7410583496094	2	480.740888	959.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.188	1	20.805	20.305	21.305	-0.38288								0	0	0	0.027865	1	7443	7443		84.522	15.417	1				7250	8168	4086	4119	7034	7034					-0.01413181492955573
EAQRKKLQEMV	11	Unmodified	_EAQRKKLQEMV_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	680.3745727539062	2	680.374286	1358.73402	0.54749	0.0003725	-0.35936	-0.0002445	0.18813	0.000128	680.3738522003412	48.453	0.56622	48.453	48.1	48.666	0					17	10	2	0	0	0	0.74191	1	18407	18407		3.2813	0.28607	1	12269000			7251	5361	4087	4120	7035	7035					0.06900160674240396
EAQSHPVFP	9	Unmodified	_EAQSHPVFP_					0	0	0			REV__ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant	REV__ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	506.248046875	2	506.248349	1010.48214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.728	1	30.467	29.967	30.967	-0.26071								0	0	0	0.1323	1	11200	11200		52.268	12.319	1		+		7252	9834	4088	4121	7036	7036					-0.022676896249549827
EAQSTNKKK	9	Unmodified	_EAQSTNKKK_					0	0	0		tr|U7T5S3|U7T5S3_FUSNUPTSsystem,fructose-specificIICcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00064PE=4SV=1	tr|U7T5S3|U7T5S3_FUSNUPTSsystem,fructose-specificIICcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00064PE=4SV=1	tr|U7T5S3|U7T5S3_FUSNUPTSsystem,fructose-specificIICcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00064PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	517.2261352539062	2	517.285463	1032.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.964	1	29.607	29.107	30.107	-0.3571								0	0	0	0.76849	1	10843	10843		6.2058	0	1				7253	18637	4089	4122	7037	7037					0.041396534665636864
EAQSVKLAS	9	Unmodified	_EAQSVKLAS_					0	0	0			REV__ENSG00000274070|ENST00000616305|CASTOR2	REV__ENSG00000274070|ENST00000616305|CASTOR2	MSMS	HCT116MG_D190212_S1	1	466.75604248046875	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.105	1	24.105	23.605	24.605	0								0	0	0	0.74083	1	8615	8615		17.113	0	1		+		7254	14451	4090	4123	7038	7038					0.02897177172235388
EAQTNDLSTH	10	Unmodified	_EAQTNDLSTH_					0	0	0		ENST00000225174.7_1_10:81114543-81114729:+|nuORF	ENST00000225174.7_1_10:81114543-81114729:+|nuORF	ENST00000225174.7_1_10:81114543-81114729:+|nuORF	MSMS	HCT116MG_D190212_S1	1	558.251953125	2	558.251817	1114.48908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.71	1	18.71	18.21	19.21	0								0	0	0	0.84701	1	6447	6447		22.736	0	1				7255	6761	4091	4124	7039	7039					-0.06358421535060188
EAQTNDLSTH	10	Unmodified	_EAQTNDLSTH_					0	0	0		ENST00000225174.7_1_10:81114543-81114729:+|nuORF	ENST00000225174.7_1_10:81114543-81114729:+|nuORF	ENST00000225174.7_1_10:81114543-81114729:+|nuORF	MSMS	HCT116MG_D190212_S2	2	558.2516479492188	2	558.251817	1114.48908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.938	1	18.569	18.069	19.069	-0.3695								0	0	0	0.5764	1	6538	6538		43.858	1.7637	1				7256	6761	4091	4124	7040	7040					-0.06358421535060188
EAQVPALQPP	10	Unmodified	_EAQVPALQPP_					0	0	0		nc|ENSG00000213413|Q6DKI7|PVRIG	nc|ENSG00000213413|Q6DKI7|PVRIG	nc|ENSG00000213413|Q6DKI7|PVRIG	MULTI-SECPEP	HCT116MG_D190212_S3	3	524.758544921875	2	525.284931	1048.55531	0.325	0.00017072	0.68966	0.00036227	1.0147	0.00053299	525.2851252895333	35.9	0.1509	35.6	35.527	35.678	-0.30042					4	2	2	0	0	0	0.29442	1	13243	13243		20.454	1.1966	1	1383300			7257	9632	4092	4125	7041	7041					0.032974390976505674
EARAEAEAA	9	Unmodified	_EARAEAEAA_					0	0	0			REV__ENSG00000179222|ENST00000326587|MAGED1	REV__ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	HCT116MG_D190212_S2	2	459.21990966796875	2	459.219788	916.425024	0.078995	3.6276E-05	0.495	0.00022732	0.574	0.00026359	459.21992139909685	16.103	0.67897	15.769	15.428	16.107	-0.33451					22	12	4	0	0	0	0.0045841	2	5419	5410;5419		142.08	20.734	1	25046000	+		7258	13633	4093	4126	7042;7043	7043					-0.03653156901350485
EARAEAEAVA	10	Unmodified	_EARAEAEAVA_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.75433349609375	2	508.753995	1015.49344	0.47401	0.00024115	-0.2855	-0.00014525	0.18851	9.5904E-05	508.7537953889608	22.507	0.3628	22.121	21.947	22.31	-0.3852					13	6	3	0	0	0	0.16489	1	7985	7985		62.573	6.3957	1	22120000	+		7259	10730	4094	4127	7044	7044					-0.013689123214930987
EARAEAEAVA	10	Unmodified	_EARAEAEAVA_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	508.75408935546875	2	508.753995	1015.49344	0.17727	9.0186E-05	-0.30789	-0.00015664	-0.13062	-6.6455E-05	508.75408145558043	22.214	0.41542	21.986	21.728	22.143	-0.22777					10	7	2	0	0	0	0.55624	1	7730	7730		31.268	5.0002	1	4048100	+		7260	10730	4094	4127	7045	7045					-0.013689123214930987
EARDHGSPP	9	Unmodified	_EARDHGSPP_					0	0	0		CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant;ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.S1935Afs*4|1|0.38|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant	CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant	CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	482.74627685546875	2	483.225405	964.436257	0.15666	7.5704E-05	0.32145	0.00015533	0.47812	0.00023104	483.225460615383	20.81	1.0388	20.601	20.032	21.071	-0.20959					26	19	2	0	0	0	0.37539	1	7291	7291		24.021	1.2843	1	2972800			7261	398	4095	4128	7046	7046					-0.047383348071889486
EARHVAGLP	9	Unmodified	_EARHVAGLP_					0	0	0		ENST00000262395.9_1_17:27076420-27076465:+|nuORF	ENST00000262395.9_1_17:27076420-27076465:+|nuORF	ENST00000262395.9_1_17:27076420-27076465:+|nuORF	MSMS	HCT116MG_D190212_S3	3	475.2648620605469	2	475.264333	948.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.034	1	38.733	38.233	39.233	-0.30137								0	0	0	0.76694	1	14480	14480		11.64	1.4569	1				7262	6864	4096	4129	7047	7047					0.03779722848844358
EARHVENP	8	Unmodified	_EARHVENP_					0	0	0		ENST00000350796.7_1_7:6203237-6203393:-|nuORF	ENST00000350796.7_1_7:6203237-6203393:-|nuORF	ENST00000350796.7_1_7:6203237-6203393:-|nuORF	MSMS	HCT116MG_D190212_S1	1	476.2337341308594	2	476.235773	950.456993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.517	1	25.517	25.017	26.017	0								0	0	0	0.8837	1	9182	9182		8.5933	1.304	1				7263	7275	4097	4130	7048	7048					-0.020217444275317575
EARHVVSPEQ	10	Unmodified	_EARHVVSPEQ_					0	0	0		nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644;ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	nc|ENSG00000122482|Q9H582-2|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	MULTI-MSMS	HCT116MG_D190212_S1	1	384.53155517578125	3	384.531638	1150.57309	0.012098	4.6522E-06	-0.078777	-3.0292E-05	-0.066679	-2.564E-05	384.5315293288363	17.124	0.15636	17.124	17.046	17.202	0					4	2	2	0	0	0	0.83158	1	5834	5834		5.4027	0.68679	1	5793400			7264	2764	4098	4131	7049	7049					0.003821543525191373
EARIPESAFL	10	Unmodified	_EARIPESAFL_					0	0	0		nc|ENSG00000140474|Q6PHR2-4|ULK3	nc|ENSG00000140474|Q6PHR2-4|ULK3	nc|ENSG00000140474|Q6PHR2-4|ULK3	MSMS	HCT116MG_D190212_S3	3	566.8057861328125	2	566.803488	1131.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.854	1	50.54	50.04	51.04	-0.31381								0	0	0	0.92917	1	19187	19187		9.3831	1.473	1				7265	9476	4099	4132	7050	7050					0.031891106434159155
EARKKSKA	8	Unmodified	_EARKKSKA_					0	0	0		APOBR|p.L868Ffs*2|1|0.24|ENSG00000184730|chr16:28497664-28497664|G/-|frameshift_variant;nc|ENSG00000184730|Q0VD83-3|APOBR;ENSG00000184730|ENST00000564831|APOBR	APOBR|p.L868Ffs*2|1|0.24|ENSG00000184730|chr16:28497664-28497664|G/-|frameshift_variant	APOBR|p.L868Ffs*2|1|0.24|ENSG00000184730|chr16:28497664-28497664|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	459.2796936035156	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.438	1	62.189	61.689	62.689	-0.24919								0	0	0	0.8837	1	23577	23577		0.79363	0	1				7266	162	4100	4133	7051	7051					0.08380295882943756
EARLQLAA	8	Unmodified	_EARLQLAA_					0	0	0		CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF	CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	436.25335693359375	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.985	1	30.718	30.218	31.218	-0.26704								0	0	0	0.74658	1	11413	11413		26.884	5.137	1				7267	417	4101	4134	7052	7052					0.05188918100259343
EARLQLAA	8	Unmodified	_EARLQLAA_					0	0	0		CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF	CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	436.2536315917969	2	436.253434	870.492316	0.072659	3.1698E-05	-0.19563	-8.5343E-05	-0.12297	-5.3645E-05	436.2534497454914	30.943	0.31255	30.682	30.5	30.813	-0.26071					7	5	2	0	0	0	0.66231	1	11324	11324		26.884	5.137	1	3009600			7268	417	4101	4134	7053	7053					0.05188918100259343
EARNAPSGT	9	Unmodified	_EARNAPSGT_					0	0	0		ENST00000445635.5_1_2:219144810-219157233:-|nuORF;ENST00000495113.5_1_2:219146832-219157233:-|nuORF;ENST00000453281.5_1_2:219150561-219157233:-|nuORF	ENST00000445635.5_1_2:219144810-219157233:-|nuORF	ENST00000445635.5_1_2:219144810-219157233:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	451.7197265625	2	451.719956	901.425358	-0.00091463	-4.1316E-07	-0.2158	-9.7482E-05	-0.21672	-9.7895E-05	451.71974992221817	14.799	0.20855	14.479	14.349	14.557	-0.31952					6	3	2	0	0	0	0.21258	1	4894	4894		39.95	0	1	2094100			7269	7949	4102	4135	7054	7054					-0.029297371814664075
EARNQPAP	8	Unmodified	_EARNQPAP_					0	0	0		ENST00000533629.5_1_11:65144811-65146868:-|nuORF;ENST00000534338.1_1_11:65144811-65144928:-|nuORF	ENST00000533629.5_1_11:65144811-65146868:-|nuORF	ENST00000533629.5_1_11:65144811-65146868:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	441.24566650390625	2	441.725041	881.435529	0.16143	7.1307E-05	-0.024896	-1.0997E-05	0.13653	6.031E-05	441.72498042072795	17.023	0.31182	16.674	16.509	16.821	-0.34933					9	5	2	0	0	0	0.2797	1	5721	5721		21.747	10.106	1	3075000			7270	8648	4103	4136	7055	7055					-0.009931294562534276
EARQLVGL	8	Unmodified	_EARQLVGL_					0	0	0		OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant;nc|ENSG00000115155|Q9HC10-5|OTOF;ENSG00000115155|ENST00000272371|OTOF	OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant	OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	443.2612609863281	2	443.261259	884.507966	0.29148	0.0001292	-0.048104	-2.1323E-05	0.24338	0.00010788	443.2610210461753	32.043	0.25914	31.813	31.683	31.942	-0.23009					7	4	2	0	0	0	0.61955	1	11870	11870		30.637	6.616	1	17033000			7271	2446	4104	4137	7056	7056					0.06109204617337127
EARQLVGL	8	Unmodified	_EARQLVGL_					0	0	0		OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant;nc|ENSG00000115155|Q9HC10-5|OTOF;ENSG00000115155|ENST00000272371|OTOF	OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant	OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	443.261259	884.507966	0.02499	1.1077E-05	-0.35583	-0.00015773	-0.33084	-0.00014665	443.26117797178233	31.986	0.15587	31.708	31.63	31.786	-0.27841	-0.090626	0.0001162	NaN	30.637	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5335400			7272	2446	4104	4137							0.06109204617337127
EARQLVGL	8	Unmodified	_EARQLVGL_					0	0	0		OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant;nc|ENSG00000115155|Q9HC10-5|OTOF;ENSG00000115155|ENST00000272371|OTOF	OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant	OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	443.261259	884.507966	0.15992	7.0888E-05	-0.95039	-0.00042127	-0.79047	-0.00035038	443.26067545929357	32.251	0.25948	31.875	31.694	31.953	-0.37529	0.076688	-0.00041089	NaN	30.637	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1202200			7273	2446	4104	4137							0.06109204617337127
EARSFCNLNSL	11	Unmodified	_EARSFCNLNSL_					0	0	0			REV__nc|ENSG00000080644|P32297-3|CHRNA3	REV__nc|ENSG00000080644|P32297-3|CHRNA3	MSMS	HCT116MG_D190212_S1	1	418.5375061035156	3	418.536283	1252.58702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.518	1	30.518	30.018	31.018	0								0	0	0	0.95023	1	11196	11196		2.8433	0	1		+		7274	10868	4105	4138	7057	7057					-0.029169362106813423
EARSPAPGY	9	Unmodified	_EARSPAPGY_					0	0	0		ENSG00000167394|ENST00000300849|ZNF668;nc|ENSG00000167394|Q96K58-2|ZNF668	ENSG00000167394|ENST00000300849|ZNF668	ENSG00000167394|ENST00000300849|ZNF668	MULTI-MSMS	HCT116MG_D190212_S3	3	474.2330627441406	2	474.232699	946.450845	0.32799	0.00015554	0.40179	0.00019054	0.72978	0.00034609	474.23280883591065	25.818	0.31286	25.69	25.546	25.859	-0.12795					9	5	3	0	0	0	0.41881	1	9279	9279		21.537	1.0834	1	6045200			7275	4919	4106	4139	7058	7058					-0.0245226265905103
EARSQGLQ	8	Unmodified	_EARSQGLQ_					0	0	0		DNAAF3|p.R326Afs*82|1|0.35|ENSG00000167646|chr19:55160713-55160713|C/-|frameshift_variant	DNAAF3|p.R326Afs*82|1|0.35|ENSG00000167646|chr19:55160713-55160713|C/-|frameshift_variant	DNAAF3|p.R326Afs*82|1|0.35|ENSG00000167646|chr19:55160713-55160713|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	444.7301330566406	2	444.730323	887.446094	0.19281	8.5748E-05	-0.43368	-0.00019287	-0.24087	-0.00010712	444.73008218558635	17.144	0.2082	16.795	16.717	16.925	-0.34933					5	3	2	0	0	0	0.67912	1	5851	5851		25.399	0.40835	1	3669000			7276	697	4107	4140	7059	7059					-0.002131468018092164
EARTNEVP	8	Unmodified	_EARTNEVP_					0	0	0			REV__ZHX1|p.T668Nfs*3|1|0.48|ENSG00000165156|chr8:123253944-123253945|-/T|frameshift_variant	REV__ZHX1|p.T668Nfs*3|1|0.48|ENSG00000165156|chr8:123253944-123253945|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	458.2283935546875	2	458.230156	914.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.132	1	33.957	33.457	34.457	-0.17512								0	0	0	0.8396	1	12688	12688		19.439	4.8573	1		+		7277	13035	4108	4141	7060	7060					-0.0148856652166387
EASAEMWA	8	Oxidation (M)	_EASAEM(Oxidation (M))WA_		EASAEM(1)WA		EASAEM(86)WA	0	0	1		ENST00000449049.7_1_12:57624376-57624707:+|nuORF	ENST00000449049.7_1_12:57624376-57624707:+|nuORF	ENST00000449049.7_1_12:57624376-57624707:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	910.4141845703125	1	910.361109	909.353833	0.75486	0.0006872	0.012293	1.1191E-05	0.76716	0.00069839	910.361119391391	43.399	0.40031	43.094	42.945	43.345	-0.30472					11	7	2	0	0	0	0.13911	2	16194	16194;16205		86.121	8.137	1	12752000			7278	7972	4109	4142	7061;7062	7061		143			-0.10446992930360466
EASAFKVLF	9	Unmodified	_EASAFKVLF_					0	0	0		ENST00000420886.6_1_12:123777925-123778129:-|nuORF	ENST00000420886.6_1_12:123777925-123778129:-|nuORF	ENST00000420886.6_1_12:123777925-123778129:-|nuORF	MSMS	HCT116MG_D190212_S4	4	506.28045654296875	2	506.279118	1010.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.107	1	31.732	31.232	32.232	-0.37529								0	0	0	0.76694	1	11680	11680		11.64	6.8843	1				7279	7783	4110	4143	7063	7063					0.03883242074323334
EASALVVEGI	10	Unmodified	_EASALVVEGI_					0	0	0			REV__ENSG00000255154|ENST00000461393|HTD2	REV__ENSG00000255154|ENST00000461393|HTD2	MULTI-MSMS	HCT116MG_D190212_S3	3	494.2713928222656	2	494.27149	986.528426	0.33729	0.00016671	-0.39098	-0.00019325	-0.053693	-2.6539E-05	494.2712738926809	32.611	0.26023	32.326	32.144	32.404	-0.28511					7	4	2	0	0	0	0.34998	1	11969	11969		46.021	0	1	6225500	+		7280	14393	4111	4144	7064	7064					0.034623304864680904
EASAPPPP	8	Unmodified	_EASAPPPP_					0	0	0		ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	MSMS	HCT116MG_D190212_S3	3	383.19232177734375	2	383.192511	764.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.473	1	26.324	25.824	26.824	-0.14924								0	0	0	0.8837	1	9499	9499		15.768	0	1				7281	5063	4112	4145	7065	7065					-0.02114123982107685
EASCQKWFHRE	11	Unmodified	_EASCQKWFHRE_					0	0	0		ENSG00000163348|ENST00000368457|PYGO2	ENSG00000163348|ENST00000368457|PYGO2	ENSG00000163348|ENST00000368457|PYGO2	MSMS	HCT116MG_D190212_S1	1	710.8233642578125	2	710.82496	1419.63537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.229	1	43.229	42.729	43.729	0								0	0	0	0.94755	1	16326	16326		7.609	1.4032	1				7282	4592	4113	4146	7066	7066					-0.057664425708253475
EASEERGY	8	Unmodified	_EASEERGY_					0	0	0			REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	MSMS	HCT116MG_D190212_S1	1	470.7034606933594	2	470.703971	939.393389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.711	1	15.711	15.211	16.211	0								0	0	0	0.8837	1	5239	5239		10.183	0.83596	1		+		7283	11383	4114	4147	7067	7067					-0.07873149655279121
EASGGPWQPP	10	Unmodified	_EASGGPWQPP_					0	0	0		PNPLA6|p.S457Pfs*59|1|0.14|ENSG00000032444|chr19:7542644-7542644|G/-|frameshift_variant	PNPLA6|p.S457Pfs*59|1|0.14|ENSG00000032444|chr19:7542644-7542644|G/-|frameshift_variant	PNPLA6|p.S457Pfs*59|1|0.14|ENSG00000032444|chr19:7542644-7542644|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	513.2254638671875	2	513.237981	1024.46141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.257	1	19.257	18.757	19.757	0								0	0	0	0.92272	1	6668	6668		10.824	2.2306	1				7284	9759	4115	4148	7068	7068					-0.049842800046235425
EASGHKYNP	9	Unmodified	_EASGHKYNP_					0	0	0		ZNF300|p.K379Nfs*18|1|0.37|ENSG00000145908|chr5:150896102-150896102|T/-|frameshift_variant;ZNF300|p.K351Nfs*46|1|0.3|ENSG00000145908|chr5:150896186-150896186|T/-|frameshift_variant;nc|ENSG00000145908|Q96RE9-4|ZNF300;ENSG00000145908|ENST00000274599|ZNF300;nc|ENSG00000145908|Q96RE9-2|ZNF300;nc|ENSG00000145908|Q96RE9-3|ZNF300	ZNF300|p.K379Nfs*18|1|0.37|ENSG00000145908|chr5:150896102-150896102|T/-|frameshift_variant	ZNF300|p.K379Nfs*18|1|0.37|ENSG00000145908|chr5:150896102-150896102|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	501.73590087890625	2	501.735606	1001.45666	0.40794	0.00020468	-0.85841	-0.0004307	-0.45047	-0.00022602	501.73485130341487	29.838	0.25828	29.537	29.444	29.702	-0.30095					6	4	2	0	0	0	0.21251	1	10964	10964		39.957	0	1	14129000			7285	3930	4116	4149	7069	7069					-0.04401164147395775
EASGRKAP	8	Unmodified	_EASGRKAP_					0	0	0		ENST00000547188.1_1_12:108154376-108154610:-|nuORF;ENST00000550376.5_1_12:108154376-108155011:-|nuORF	ENST00000547188.1_1_12:108154376-108154610:-|nuORF	ENST00000547188.1_1_12:108154376-108154610:-|nuORF	MSMS	HCT116MG_D190212_S4	4	408.2236022949219	2	408.222134	814.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.306	1	35.921	35.421	36.421	-0.38558								0	0	0	0.8837	1	13281	13281		14.582	5.2343	1				7286	8731	4117	4150	7070	7070					0.01507772032084631
EASHRYYI	8	Unmodified	_EASHRYYI_					0	0	0		ENST00000429544.6_1_3:129152038-129152736:-|nuORF	ENST00000429544.6_1_3:129152038-129152736:-|nuORF	ENST00000429544.6_1_3:129152038-129152736:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	520.3330688476562	2	519.753798	1037.49304	-0.077818	-4.0446E-05	1.1341	0.00058943	1.0562	0.00054899	520.2558692341819	43.144	0.15425	43.071	42.943	43.097	-0.073376					4	2	2	0	0	0	0.29766	1	16354	16354		14.582	14.582	1	6712800			7287	7839	4118	4151	7071	7071					-0.024202872506748463
EASKLAPTA	9	Unmodified	_EASKLAPTA_					0	0	0		tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1	tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1	tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	444.2454833984375	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.058	1	23.675	23.175	24.175	-0.38324								0	0	0	0.22299	1	8604	8604		45.7	7.7256	1				7288	18388	4119	4152	7072	7072					0.02821792143527091
EASLSKIDL	9	Unmodified	_EASLSKIDL_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MSMS	HCT116MG_D190212_S3	3	488.3076477050781	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.935	1	25.807	25.307	26.307	-0.12795								0	0	0	0.76603	1	9282	9282		14.838	0.93222	1		+		7289	11277	4120	4153	7073	7073					0.040143304864727725
EASNSRPDP	9	Unmodified	_EASNSRPDP_					0	0	0			REV__nc|ENSG00000236756|A6NH13|DNAJC9-AS1	REV__nc|ENSG00000236756|A6NH13|DNAJC9-AS1	MSMS	HCT116MG_D190212_S3	3	486.7215576171875	2	486.722695	971.430838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.226	1	20.274	19.774	20.774	0.048107								0	0	0	0.61599	1	6983	6983		23.148	2.6948	1		+		7290	17304	4121	4154	7074	7074					-0.05602058389661124
EASPAHPRP	9	Unmodified	_EASPAHPRP_					0	0	0			REV__ENST00000607222.1_1_1:1550975-1551155:-|nuORF	REV__ENST00000607222.1_1_1:1550975-1551155:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	481.7383117675781	2	481.246141	960.477728	0.13312	6.4061E-05	0.13274	6.3881E-05	0.26586	0.00012794	481.24614869551806	18.323	0.62134	18.142	17.786	18.407	-0.18051					20	11	2	0	0	0	0.24622	1	6061	6061		1.6526	0	1	1747700	+		7291	16779	4122	4155	7075	7075					-0.004091540478725619
EASPGVPVA	9	Unmodified	_EASPGVPVA_					0	0	0		KCNJ4|p.A95V|1|0.23|ENSG00000168135|chr22:38427849-38427849|G/A|missense_variant	KCNJ4|p.A95V|1|0.23|ENSG00000168135|chr22:38427849-38427849|G/A|missense_variant	KCNJ4|p.A95V|1|0.23|ENSG00000168135|chr22:38427849-38427849|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	826.4306640625	1	826.430509	825.423233	0.81908	0.00067691	0.050769	4.1957E-05	0.86985	0.00071887	826.43039223186	31.374	0.52192	31.104	30.908	31.43	-0.27028					20	9	3	0	0	0	0.011506	1	11440	11440		109.63	0	1	29221000			7292	9256	4123	4156	7076	7076					0.0035383408070401856
EASPGVPVA	9	Unmodified	_EASPGVPVA_					0	0	0		KCNJ4|p.A95V|1|0.23|ENSG00000168135|chr22:38427849-38427849|G/A|missense_variant	KCNJ4|p.A95V|1|0.23|ENSG00000168135|chr22:38427849-38427849|G/A|missense_variant	KCNJ4|p.A95V|1|0.23|ENSG00000168135|chr22:38427849-38427849|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	826.43115234375	1	826.430509	825.423233	0.72973	0.00060307	0.23868	0.00019725	0.9684	0.00080032	826.4305198077336	31.507	0.41575	31.137	30.919	31.335	-0.37026					17	7	3	0	0	0	0.011506	1	11426	11426		109.63	0	1	16006000			7293	9256	4123	4156	7077	7077					0.0035383408070401856
EASPNPPQGPA	11	Unmodified	_EASPNPPQGPA_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7540893554688	2	532.753995	1063.49344	0.4103	0.00021859	-0.45069	-0.00024011	-0.04039	-2.1518E-05	532.7537243067524	22.716	0.9775	22.697	21.866	22.844	-0.018869					26	18	2	0	0	0	0.7093	1	7716	7716		18.373	3.1246	1	10309000			7294	5626	4124	4157	7078	7078					-0.03576912321477721
EASQAKTQQD	10	Unmodified	_EASQAKTQQD_					0	0	0		NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant;ENST00000547725.1_1_12:78362333-78400327:+|nuORF;NAV3|p.K498Rfs*8|1|0.38|ENSG00000067798|chr12:78007026-78007026|A/-|frameshift_variant;NAV3|p.K1098Nfs*81|1|0.22|ENSG00000067798|chr12:78119487-78119487|A/-|frameshift_variant	NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant	NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	553.2600708007812	2	553.259642	1104.50473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.816	1	30.555	30.055	31.055	-0.26071								0	0	0	0.87399	1	11235	11235		19.257	1.1106	1				7295	1191	4125	4158	7079	7079					-0.043341350179844085
EASRERSHSS	10	Unmodified	_EASRERSHSS_					0	0	0			REV__ENSG00000054118|ENST00000354618|THRAP3	REV__ENSG00000054118|ENST00000354618|THRAP3	MSMS	HCT116MG_D190212_S4	4	573.269775390625	2	573.268333	1144.52211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.547	1	20.346	19.846	20.846	-0.20133								0	0	0	0.90892	1	7040	7040		13.906	0.86358	1		+		7296	10631	4126	4159	7080	7080					-0.04436794692333024
EASSGVLSPP	10	Unmodified	_EASSGVLSPP_					0	0	0		ENST00000599699.2_1_19:18544112-18544157:+|nuORF	ENST00000599699.2_1_19:18544112-18544157:+|nuORF	ENST00000599699.2_1_19:18544112-18544157:+|nuORF	MSMS	HCT116MG_D190212_S3	3	472.2457275390625	2	472.24019	942.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.338	1	24.258	23.758	24.758	-0.079777								0	0	0	0.77279	1	8638	8638		32.305	0	1				7297	9082	4127	4160	7081	7081					-0.007708155817113038
EASTWNQLQ	9	Unmodified	_EASTWNQLQ_					0	0	0			REV__TPO|p.R341Q|1|0.35|ENSG00000115705|chr2:1477288-1477288|G/A|missense_variant	REV__TPO|p.R341Q|1|0.35|ENSG00000115705|chr2:1477288-1477288|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	539.4901123046875	2	538.753995	1075.49344	0.49507	0.00026672	0.2304	0.00012413	0.72548	0.00039085	538.7538212682495	23.915	0.31365	23.915	23.732	24.045	0					9	5	2	0	0	0	0.61923	1	8494	8494		10.074	0	1	7930500	+		7298	17655	4128	4161	7082	7082					-0.041289123214710344
EASTYILI	8	Unmodified	_EASTYILI_					0	0	0			REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	MSMS	HCT116MG_D190212_S1	1	455.6843566894531	2	455.250026	908.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.281	1	43.281	42.781	43.781	0								0	0	0	0.8837	1	16347	16347		9.3474	0	1		+		7299	16020	4129	4162	7083	7083					0.027595604290468145
EASVRRDL	8	Unmodified	_EASVRRDL_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|72|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|72|1|anti-sense	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2596435546875	2	473.259248	944.503943	-0.065378	-3.0941E-05	0.8102	0.00038344	0.74483	0.0003525	473.2593081649729	36.099	0.66347	35.798	35.482	36.145	-0.30041					15	12	2	0	0	0	0.60268	1	13307	13307		32.117	5.7757	1	5465300	+		7300	10181	4130	4163	7084	7084					0.02947115123618005
EASVTLNFVP	10	Unmodified	_EASVTLNFVP_					0	0	0			REV__CDHR2|p.G788Vfs*4|1|0.31|ENSG00000074276|chr5:176584639-176584639|G/-|frameshift_variant	REV__CDHR2|p.G788Vfs*4|1|0.31|ENSG00000074276|chr5:176584639-176584639|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	538.784912109375	2	538.784764	1075.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.226	1	33.84	33.34	34.34	-0.38558								0	0	0	0.7978	1	12489	12489		29.082	1.4528	1		+		7301	10138	4131	4164	7085	7085					0.020220193778186513
EASWVQDCCP	10	Unmodified	_EASWVQDCCP_					0	0	0			REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	569.7733764648438	2	569.220617	1136.42668	0.19625	0.00011171	-0.22522	-0.0001282	-0.028972	-1.6491E-05	569.2205171807543	32.18	1.0423	32.18	31.492	32.534	0					32	19	3	0	0	0	0.81435	1	11930	11930		10.824	3.5347	1	9629300	+		7302	16324	4132	4165	7086	7086					-0.1360760719924201
EASWVQDCCP	10	Unmodified	_EASWVQDCCP_					0	0	0			REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	569.220458984375	2	569.220617	1136.42668	0.38655	0.00022003	0.11784	6.7075E-05	0.50439	0.00028711	569.2206336305727	32.41	1.6088	32.18	30.959	32.567	-0.23009					66	30	3	0	0	0	0.6277	1	11970	11970		26.268	4.7312	1	79557000	+		7303	16324	4132	4165	7087	7087					-0.1360760719924201
EASWVQDCCP	10	Unmodified	_EASWVQDCCP_					0	0	0			REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1137.435302734375	1	1137.43396	1136.42668	0.47834	0.00054408	0.48289	0.00054926	0.96124	0.0010933	1137.4344596795067	32.427	0.41632	32.197	31.942	32.359	-0.23009					9	7	2	0	0	0	0.71349	1	12026	12026		19.257	1.1106	1	11904000	+		7304	16324	4132	4165	7088	7088					-0.1360760719924201
EASWVQDCCP	10	Unmodified	_EASWVQDCCP_					0	0	0			REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	569.22119140625	2	569.220617	1136.42668	0.49972	0.00028445	0.0031445	1.7899E-06	0.50286	0.00028624	569.2206294511838	32.627	1.6727	32.341	31.05	32.722	-0.28511					83	32	4	0	0	0	0.71349	2	11859	11859;12091		19.257	4.4187	1	44113000	+		7305	16324	4132	4165	7089;7090	7089					-0.1360760719924201
EASWVQDCCP	10	Unmodified	_EASWVQDCCP_					0	0	0			REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	REV__ENST00000532584.5_1_15:89865171-89868823:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1137.43396	1136.42668	0.5332	0.00060648	0.036717	4.1764E-05	0.56992	0.00064824	1137.4340741483306	32.629	0.26023	32.344	32.144	32.404	-0.28511	0.073869	-0.00010891	NaN	19.257	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1938200	+		7306	16324	4132	4165							-0.1360760719924201
EATAASPAPAG	11	Unmodified	_EATAASPAPAG_					0	0	0		ENST00000274853.7_1_6:30653619-30653868:-|nuORF	ENST00000274853.7_1_6:30653619-30653868:-|nuORF	ENST00000274853.7_1_6:30653619-30653868:-|nuORF	MSMS	HCT116MG_D190212_S3	3	471.7298889160156	2	471.729989	941.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.523	1	16.609	16.109	17.109	0.085424								0	0	0	0.62862	1	5489	5489		41.84	1.8823	1				7307	6929	4133	4166	7091	7091					-0.02763986241529892
EATAQTAPQP	10	Unmodified	_EATAQTAPQP_					0	0	0		FLT3LG|p.P179Q|1|0.11|ENSG00000090554|chr19:49480352-49480352|C/A|missense_variant	FLT3LG|p.P179Q|1|0.11|ENSG00000090554|chr19:49480352-49480352|C/A|missense_variant	FLT3LG|p.P179Q|1|0.11|ENSG00000090554|chr19:49480352-49480352|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	507.2484436035156	2	507.248546	1012.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.965	1	20.755	20.255	21.255	-0.20959								0	0	0	0.90023	1	7209	7209		15.847	0	1				7308	9159	4134	4167	7092	7092					-0.02320314695759862
EATARASQQP	10	Unmodified	_EATARASQQP_					0	0	0		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	MSMS	HCT116MG_D190212_S4	4	529.76513671875	2	529.764894	1057.51524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.004	1	23.746	23.246	24.246	-0.25816								0	0	0	0.87399	1	8435	8435		19.257	1.122	1				7309	5580	4135	4168	7093	7093					-0.011221075729281438
EATAWGPAVGA	11	Unmodified	_EATAWGPAVGA_					0	0	0		ENST00000367537.7_2_1:183521966-183522155:+|nuORF	ENST00000367537.7_2_1:183521966-183522155:+|nuORF	ENST00000367537.7_2_1:183521966-183522155:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2531127929688	2	515.253631	1028.49271	0.069708	3.5917E-05	0.59563	0.0003069	0.66534	0.00034282	515.2537079198772	36.608	0.46831	36.307	36.041	36.509	-0.30113					14	8	2	0	0	0	0.67041	1	13600	13600		27.629	0.74515	1	2287800			7310	7390	4136	4169	7094	7094					-0.020397069705268223
EATENLPQ	8	Unmodified	_EATENLPQ_					0	0	0			REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MSMS	HCT116MG_D190212_S3	3	451.2164611816406	2	451.216714	900.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.224	1	19.288	18.788	19.788	0.063997								0	0	0	0.79325	1	6579	6579		23.148	0	1		+		7311	12408	4137	4170	7095	7095					-0.03531675132842338
EATEQNKY	8	Unmodified	_EATEQNKY_					0	0	0			REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	MSMS	HCT116MG_D190212_S2	2	491.75177001953125	2	491.727446	981.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.936	1	15.602	15.102	16.102	-0.33451								0	0	0	0.8837	1	5330	5330		7.9102	0.62092	1		+		7312	16427	4138	4171	7096	7096					-0.051122901041367186
EATFTFLL	8	Unmodified	_EATFTFLL_					0	0	0			REV__nc|ENSG00000088926|P03951-2|F11	REV__nc|ENSG00000088926|P03951-2|F11	MSMS	HCT116MG_D190212_S2	2	471.25115966796875	2	471.252569	940.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.844	1	44.759	44.259	45.259	-0.084797								0	0	0	0.8396	1	17040	17040		19.439	0	1		+		7313	10962	4139	4172	7097	7097					0.017958642916710232
EATGPPSRP	9	Unmodified	_EATGPPSRP_					0	0	0			REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	456.2330627441406	2	456.232699	910.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.36	1	20.159	19.659	20.659	-0.20133								0	0	0	0.56943	1	6965	6965		25.399	0.72543	1		+		7314	14306	4140	4173	7098	7098					-0.007962626590483524
EATIKIRPVP	10	Unmodified	_EATIKIRPVP_					0	0	0		AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant;ENSG00000018510|ENST00000264167|AGPS	AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant	AGPS|p.F440Lfs*8|1|0.24|ENSG00000018510|chr2:177497719-177497719|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	562.81982421875	2	562.345323	1122.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.203	1	37.902	37.402	38.402	-0.30137								0	0	0	0.95507	1	14144	14144		3.5965	0.31518	1				7315	79	4141	4174	7099	7099					0.11966266811123205
EATLQRAQLY	10	Unmodified	_EATLQRAQLY_					0	0	0		ENST00000495607.5_1_22:50750570-50752368:-|nuORF;ENSG00000205593|ENST00000413817|DENND6B	ENST00000495607.5_1_22:50750570-50752368:-|nuORF	ENST00000495607.5_1_22:50750570-50752368:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	596.8193359375	2	596.81967	1191.62479	0.9904	0.00059109	-1.4018	-0.00083664	-0.41143	-0.00024555	596.8186187534787	31.16	0.30916	30.79	30.662	30.971	-0.37026					9	5	2	0	0	0	0.78781	1	11328	11328		13.042	2.9685	1	4876100			7316	6387	4142	4175	7100	7100					0.036638980464203996
EATLVFWY	8	Unmodified	_EATLVFWY_					0	0	0			REV__ENSG00000079805|ENST00000389253|DNM2	REV__ENSG00000079805|ENST00000389253|DNM2	MULTI-MSMS	HCT116MG_D190212_S3	3	514.7578125	2	514.758018	1027.50148	0.14179	7.2985E-05	-0.27694	-0.00014256	-0.13515	-6.957E-05	514.7577526104271	38.908	0.51985	38.607	38.352	38.872	-0.30137					19	9	3	0	0	0	0.74206	1	14427	14427		18.135	7.3111	1	12631000	+		7317	10397	4143	4176	7101	7101					-0.01116733334060882
EATPTKAENP	10	Unmodified	_EATPTKAENP_					0	0	0		ENST00000475405.2_1_2:74274397-74300767:+|nuORF;nc|ENSG00000187605|O43151-3|TET3;TET3|p.V1242Gfs*44|1|0.4|ENSG00000187605|chr2:74100510-74100511|-/G|frameshift_variant;TET3|p.F1385Lfs*17|1|0.17|ENSG00000187605|chr2:74100936-74100936|C/-|frameshift_variant;TET3|p.A1477Pfs*54|1|0.32|ENSG00000187605|chr2:74101214-74101214|G/-|frameshift_variant;TET3|p.S1618Afs*5|2|0.34|ENSG00000187605|chr2:74101634-74101634|C/-|frameshift_variant;nc|ENSG00000187605|O43151-2|TET3;TET3|p.T1749Hfs*5|2|0.29|ENSG00000187605|chr2:74102024-74102025|-/G|frameshift_variant;ENSG00000187605|ENST00000409262|TET3	ENST00000475405.2_1_2:74274397-74300767:+|nuORF	ENST00000475405.2_1_2:74274397-74300767:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	529.3037109375	2	529.261653	1056.50875	0.55797	0.00029531	-0.21604	-0.00011434	0.34194	0.00018097	529.2615844267872	26.326	0.88594	26.177	25.629	26.515	-0.14924					18	16	2	0	0	0	0.27462	1	9467	9467		8.7454	0	1	6357200			7318	5947	4144	4177	7102	7102					-0.017240455242927055
EATTAAVPSP	10	Unmodified	_EATTAAVPSP_					0	0	0		FAM117B|p.V383Yfs*120|1|0.15|ENSG00000138439|chr2:202757246-202757246|C/-|frameshift_variant	FAM117B|p.V383Yfs*120|1|0.15|ENSG00000138439|chr2:202757246-202757246|C/-|frameshift_variant	FAM117B|p.V383Yfs*120|1|0.15|ENSG00000138439|chr2:202757246-202757246|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	472.2396545410156	2	472.24019	942.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.948	1	24.572	24.072	25.072	-0.37521								0	0	0	0.72975	1	8963	8963		36.127	2.0246	1				7319	9147	4145	4178	7103	7103					-0.007708155817113038
EATVASARAA	10	Unmodified	_EATVASARAA_					0	0	0		ENST00000607322.1_1_9:99973694-100000842:-|nuORF	ENST00000607322.1_1_9:99973694-100000842:-|nuORF	ENST00000607322.1_1_9:99973694-100000842:-|nuORF	MSMS	HCT116MG_D190212_S3	3	473.7509460449219	2	473.751256	945.487959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.233	1	22.234	21.734	22.734	0.00074577								0	0	0	0.76907	1	7789	7789		32.786	1.5173	1				7320	9119	4146	4179	7104	7104					0.01303408886701618
EATVMGRD	8	Unmodified	_EATVMGRD_					0	0	0		ENST00000245304.4_1_13:98117480-98117684:+|nuORF	ENST00000245304.4_1_13:98117480-98117684:+|nuORF	ENST00000245304.4_1_13:98117480-98117684:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	439.7054138183594	2	439.70546	877.396366	-0.023379	-1.028E-05	0.32889	0.00014461	0.30551	0.00013433	439.705558055352	17.895	0.26008	17.976	17.846	18.106	0.081358					6	4	2	0	0	0	0.71077	1	6079	6079		21.747	0	1	2248000			7321	6788	4147	4180	7105	7105					-0.047235978021149094
EATVPAPKSKK	11	Unmodified	_EATVPAPKSKK_					0	0	0			REV__SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant	REV__SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	578.33837890625	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.236	1	32.236	31.736	32.736	0								0	0	0	0.9465	1	11889	11889		8.1555	0.24537	1		+		7322	14209	4148	4181	7106	7106					0.09477659085882806
EAVAVDAWAP	10	Unmodified	_EAVAVDAWAP_					0	0	0			REV__ENST00000483303.1_1_22:42912068-42915792:-|nuORF	REV__ENST00000483303.1_1_22:42912068-42915792:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	515.2481689453125	2	514.756007	1027.49746	0.19298	9.9338E-05	2.586	0.0013312	2.779	0.0014305	514.7568492214142	38.946	0.30417	38.565	38.336	38.64	-0.38163					6	5	2	0	0	0	0.29442	1	14272	14272		10.074	7.0787	1	1753300	+		7323	15970	4149	4182	7107	7107					-0.015188228277793314
EAVAVDAWAP	10	Unmodified	_EAVAVDAWAP_					0	0	0			REV__ENST00000483303.1_1_22:42912068-42915792:-|nuORF	REV__ENST00000483303.1_1_22:42912068-42915792:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	514.756007	1027.49746	0.12871	6.6256E-05	3.5294	0.0018168	3.6582	0.0018831	514.7577304577451	38.62	0.63016	38.535	38.227	38.857	-0.084621	-0.033672	-3.206E-05	NaN	10.074	27	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170830000	+		7324	15970	4149	4182							-0.015188228277793314
EAVDKGFPP	9	Unmodified	_EAVDKGFPP_					0	0	0		ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204963|ENST00000525929|PCDHA7;PCDHA9|p.K764Pfs*50|1|0.23|ENSG00000204961|chr5:140850784-140850785|-/CC|frameshift_variant;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;nc|ENSG00000204963|Q9UN72-2|PCDHA7;PCDHA9|p.V320F|1|0.24|ENSG00000204961|chr5:140849453-140849453|G/T|missense_variant;PCDHA7|p.V320F|1|0.18|ENSG00000204963|chr5:140835341-140835341|G/T|missense_variant	ENSG00000204961|ENST00000532602|PCDHA9	ENSG00000204961|ENST00000532602|PCDHA9	MULTI-MSMS	HCT116MG_D190212_S3	3	480.2454833984375	2	480.245275	958.475997	0.27817	0.00013359	-0.30239	-0.00014522	-0.024219	-1.1631E-05	480.2453006615801	26.792	2.343	26.642	26.255	28.598	-0.14924					70	44	2	0	0	0	0.19461	1	10256	10256		41.84	3.6884	1	8890600			7325	6360	4150	4183	7108	7108					-0.0049020785647826415
EAVELELW	8	Unmodified	_EAVELELW_					0	0	0			REV__ENST00000434123.2_1_9:42267014-42267233:+|nuORF	REV__ENST00000434123.2_1_9:42267014-42267233:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	494.7513427734375	2	494.752933	987.491313	0.29593	0.00014641	-3.0094	-0.0014889	-2.7134	-0.0013425	494.7508420812913	27.003	0.26068	26.833	26.703	26.964	-0.16933					6	4	2	0	0	0	0.79062	1	9751	9751		12.532	0.89125	1	2455400	+		7326	15604	4151	4184	7109	7109					-0.0029334105929592624
EAVGGEGPREP	11	Unmodified	_EAVGGEGPREP_					0	0	0		nc|ENSG00000134278|Q08AE8-2|SPIRE1;ENSG00000134278|ENST00000409402|SPIRE1	nc|ENSG00000134278|Q08AE8-2|SPIRE1	nc|ENSG00000134278|Q08AE8-2|SPIRE1	MSMS	HCT116MG_D190212_S3	3	549.2874145507812	2	549.264727	1096.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.25	1	26.101	25.601	26.601	-0.14924								0	0	0	0.89672	1	9409	9409		20.415	1.1575	1				7327	3274	4152	4185	7110	7110					-0.029495272927533733
EAVGKPHGI	9	Unmodified	_EAVGKPHGI_					0	0	0		ENSG00000178538|ENST00000317995|CA8;CA8|p.A164T|1|0.09|ENSG00000178538|chr8:60232307-60232307|C/T|missense_variant	ENSG00000178538|ENST00000317995|CA8	ENSG00000178538|ENST00000317995|CA8	MSMS	HCT116MG_D190212_S1	1	454.25482177734375	2	454.253434	906.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.169	1	17.169	16.669	17.669	0								0	0	0	0.76669	1	5827	5827		12.532	2.3482	1				7328	5505	4153	4186	7111	7111					0.03532918100279403
EAVIVQEIRV	10	Unmodified	_EAVIVQEIRV_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MSMS	HCT116MG_D190212_S4	4	578.3386840820312	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.46	1	43.086	42.586	43.586	-0.37433								0	0	0	0.95648	1	15976	15976		3.2813	1.2216	1		+		7329	12018	4154	4187	7112	7112					0.09477659085860068
EAVKKLARP	9	Unmodified	_EAVKKLARP_					0	0	0		tr|U7T2E2|U7T2E2_FUSNUD-alanine--D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ddlPE=3SV=1	tr|U7T2E2|U7T2E2_FUSNUD-alanine--D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ddlPE=3SV=1	tr|U7T2E2|U7T2E2_FUSNUD-alanine--D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ddlPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	506.3169250488281	2	506.319109	1010.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.533	1	32.533	32.033	33.033	0								0	0	0	0.76902	1	12008	12008		4.3292	0	1				7330	18575	4155	4188	7113	7113					0.11877728468175519
EAVKKLARP	9	Unmodified	_EAVKKLARP_					0	0	0		tr|U7T2E2|U7T2E2_FUSNUD-alanine--D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ddlPE=3SV=1	tr|U7T2E2|U7T2E2_FUSNUD-alanine--D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ddlPE=3SV=1	tr|U7T2E2|U7T2E2_FUSNUD-alanine--D-alanineligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ddlPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	506.3169860839844	2	506.319109	1010.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.863	1	32.652	32.152	33.152	-0.21135								0	0	0	0.76694	1	12174	12174		11.64	1.4569	1				7331	18575	4155	4188	7114	7114					0.11877728468175519
EAVLRILEEWH	11	Unmodified	_EAVLRILEEWH_					0	0	0		WWOX|p.S166L|1|0.07|ENSG00000186153|chr16:78164270-78164270|C/T|missense_variant	WWOX|p.S166L|1|0.07|ENSG00000186153|chr16:78164270-78164270|C/T|missense_variant	WWOX|p.S166L|1|0.07|ENSG00000186153|chr16:78164270-78164270|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	697.8746337890625	2	697.874976	1393.7354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.558	1	40.558	40.058	41.058	0								0	0	0	0.95273	1	15248	15248		4.897	1.6157	1				7332	18698	4156	4189	7115	7115					0.05428118034660656
EAVNGHASTPP	11	Unmodified	_EAVNGHASTPP_					0	0	0			REV__HPX|p.F70Lfs*16|2|0.25|ENSG00000110169|chr11:6440471-6440471|A/-|frameshift_variant	REV__HPX|p.F70Lfs*16|2|0.25|ENSG00000110169|chr11:6440471-6440471|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	540.7198486328125	2	540.259445	1078.50434	0.4382	0.00023674	-0.24888	-0.00013446	0.18932	0.00010228	540.2591921117153	19.753	0.78135	19.813	19.229	20.011	0.05983					24	14	2	0	0	0	0.33458	1	6617	6617		19.362	0	1	3350800	+		7333	11393	4157	4190	7116	7116					-0.03177509947181534
EAVNGVDLDH	10	Unmodified	_EAVNGVDLDH_					0	0	0			REV__tr|U7SNI9|U7SNI9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02006PE=3SV=1	REV__tr|U7SNI9|U7SNI9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02006PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	534.8296508789062	2	534.751453	1067.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.225	1	17.868	17.368	18.368	-0.35647								0	0	0	0.53988	1	6251	6251		45.7	7.7256	1		+		7334	17733	4158	4191	7117	7117					-0.042692161840932386
EAVNGVDLDH	10	Unmodified	_EAVNGVDLDH_					0	0	0			REV__tr|U7SNI9|U7SNI9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02006PE=3SV=1	REV__tr|U7SNI9|U7SNI9_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02006PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	534.7515869140625	2	534.751453	1067.48835	0.28332	0.00015151	-0.30638	-0.00016384	-0.023055	-1.2329E-05	534.7512876599568	18.012	1.3489	17.837	17.428	18.777	-0.17501					43	25	2	0	0	0	0.37752	1	5955	5955		43.772	3.0475	1	4127100	+		7335	17733	4158	4191	7118	7118					-0.042692161840932386
EAVNTHREKP	10	Unmodified	_EAVNTHREKP_					0	0	0		nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1	nc|ENSG00000158571|P16118-2|PFKFB1	nc|ENSG00000158571|P16118-2|PFKFB1	MULTI-MSMS	HCT116MG_D190212_S2	2	590.8065185546875	2	590.807094	1179.59963	0.46617	0.00027542	-0.6661	-0.00039354	-0.19993	-0.00011812	590.8068629980057	14.851	0.3128	14.531	14.296	14.609	-0.31952					8	5	2	0	0	0	0.81345	1	4899	4899		8.1555	0	1	1188300			7336	4381	4159	4192	7119	7119					0.017018432438362652
EAVNVATTEK	10	Unmodified	_EAVNVATTEK_					0	0	0		tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	tr|U7SW21|U7SW21_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01424PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	531.2763671875	2	531.277303	1060.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.692	1	29.343	28.843	29.843	-0.34921								0	0	0	0.89062	1	10733	10733		17.113	0	1				7337	18499	4160	4193	7120	7120					0.012205275098040147
EAVNVSYPQ	9	Unmodified	_EAVNVSYPQ_					0	0	0			REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	503.7472839355469	2	503.745639	1005.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.42	1	33.13	32.63	33.63	-0.29013								0	0	0	0.76739	1	12264	12264		10.074	0.6908	1		+		7338	10210	4161	4194	7121	7121					-0.02579413207433845
EAVPCEVPPP	10	Unmodified	_EAVPCEVPPP_					0	0	0			REV__DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	REV__DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	519.1389770507812	2	519.252243	1036.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.033	1	18.664	18.164	19.164	-0.3695								0	0	0	0.91906	1	6576	6576		11.64	0.81637	1		+		7339	10328	4162	4195	7122	7122					-0.026852984197148544
EAVQSASVP	9	Unmodified	_EAVQSASVP_					0	0	0			REV__nc|ENSG00000215162|Q8N2A0|LINC00269	REV__nc|ENSG00000215162|Q8N2A0|LINC00269	MULTI-MSMS	HCT116MG_D190212_S2	2	444.2270812988281	2	444.227082	886.439611	0.16012	7.1128E-05	0.097937	4.3506E-05	0.25805	0.00011463	444.22701061399357	20.852	0.83109	20.469	20.338	21.169	-0.38288					24	15	2	0	0	0	0.14171	1	7326	7326		49.933	0.37871	1	8614700	+		7340	17291	4163	4196	7123	7123					-0.008150847531851468
EAVQSASVP	9	Unmodified	_EAVQSASVP_					0	0	0			REV__nc|ENSG00000215162|Q8N2A0|LINC00269	REV__nc|ENSG00000215162|Q8N2A0|LINC00269	MULTI-MSMS	HCT116MG_D190212_S3	3	444.2274169921875	2	444.227082	886.439611	0.038306	1.7017E-05	0.060012	2.6659E-05	0.098318	4.3675E-05	444.2271175534346	20.144	0.62488	20.192	19.947	20.572	0.048107					18	11	2	0	0	0	0.19461	1	6951	6951		41.84	1.8823	1	3510600	+		7341	17291	4163	4196	7124	7124					-0.008150847531851468
EAVQSASVP	9	Unmodified	_EAVQSASVP_					0	0	0			REV__nc|ENSG00000215162|Q8N2A0|LINC00269	REV__nc|ENSG00000215162|Q8N2A0|LINC00269	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	444.227082	886.439611	0.038306	1.7017E-05	0.060012	2.6659E-05	0.098318	4.3675E-05	444.2271175534346	20.144	0.62488	20.192	19.947	20.572	0.048107	-0.13812	-1.9446E-05	NaN	49.933	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3510600	+		7342	17291	4163	4196							-0.008150847531851468
EAVSLELHT	9	Unmodified	_EAVSLELHT_					0	0	0		ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	ENSG00000112343|ENST00000357085|TRIM38	MSMS	HCT116MG_D190212_S3	3	499.7606201171875	2	499.761289	997.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.363	1	30.114	29.614	30.614	-0.24946								0	0	0	0.3894	1	11064	11064		34.102	5.0209	1				7343	2343	4164	4197	7125	7125					0.009171598266561887
EAVSNIQE	8	Unmodified	_EAVSNIQE_					0	0	0		ENSG00000196531|ENST00000454682|NACA;ENST00000419462.1_1_8:102381493-102381775:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	HCT116MG_D190212_S2	2	445.2166442871094	2	445.216714	888.418876	0.18338	8.1643E-05	-0.11396	-5.0736E-05	0.069419	3.0906E-05	445.2165494695196	16.78	0.31208	16.438	16.308	16.62	-0.34183					6	5	2	0	0	0	0.67912	1	5695	5695		25.399	0	1	6834000			7344	6081	4165	4198	7126	7126					-0.029796751328603932
EAVSVTEPQ	9	Unmodified	_EAVSVTEPQ_					0	0	0			REV__ENSG00000172167|ENST00000305949|MTBP	REV__ENSG00000172167|ENST00000305949|MTBP	MULTI-MSMS	HCT116MG_D190212_S2	2	480.73553466796875	2	480.237647	958.460741	0.21017	0.00010093	0.99395	0.00047733	1.2041	0.00057826	480.2378271143949	16.753	0.15631	16.411	16.308	16.464	-0.34183					4	2	2	0	0	0	0.56733	1	5624	5624		13.042	0	1	1256500	+		7345	13375	4166	4199	7127	7127					-0.020151194443201348
EAVTEALP	8	Unmodified	_EAVTEALP_					0	0	0		ENST00000511633.5_1_4:170533254-170533704:-|nuORF;ENST00000439128.6_2_4:170533254-170533704:-|nuORF	ENST00000511633.5_1_4:170533254-170533704:-|nuORF	ENST00000511633.5_1_4:170533254-170533704:-|nuORF	MSMS	HCT116MG_D190212_S4	4	415.5462646484375	2	415.218726	828.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.571	1	28.239	27.739	28.739	-0.33138								0	0	0	0.8837	1	10280	10280		10.183	0	1				7346	7906	4167	4200	7128	7128					0.0018241436084736051
EAVTEEDTP	9	Unmodified	_EAVTEEDTP_					0	0	0			REV__ENST00000506047.1_1_4:77936059-77941836:+|nuORF	REV__ENST00000506047.1_1_4:77936059-77941836:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	495.7166748046875	2	495.716744	989.418936	0.29621	0.00014684	-0.68748	-0.0003408	-0.39127	-0.00019396	495.71648116668916	18.479	0.2606	18.555	18.361	18.622	0.076334					6	4	2	0	0	0	0.51829	1	6304	6304		15.847	2.3393	1	1547900	+		7347	12240	4168	4201	7129	7129					-0.07619719923502544
EAVTFYTKH	9	Unmodified	_EAVTFYTKH_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	HCT116MG_D190212_S3	3	548.56591796875	2	548.277106	1094.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.292	1	37.991	37.491	38.491	-0.30137								0	0	0	0.76818	1	14180	14180		7.2892	0	1		+		7348	14245	4169	4202	7130	7130					-0.0038284741940515232
EAVVVEGLNPT	11	Unmodified	_EAVVVEGLNPT_					0	0	0			REV__nc|ENSG00000041982|P24821-4|TNC	REV__nc|ENSG00000041982|P24821-4|TNC	MSMS	HCT116MG_D190212_S4	4	564.3031005859375	2	564.300778	1126.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.276	1	44.903	44.403	45.403	-0.37266								0	0	0	0.95273	1	16696	16696		4.897	0.56777	1		+		7349	10592	4170	4203	7131	7131					0.02877387060948422
EAWVKIENL	9	Unmodified	_EAWVKIENL_					0	0	0		nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant;ENSG00000078304|ENST00000694906|PPP2R5C;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C	nc|ENSG00000078304|Q13362|PPP2R5C	nc|ENSG00000078304|Q13362|PPP2R5C	MSMS	HCT116MG_D190212_S1	1	551.2986450195312	2	551.300581	1100.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.403	1	25.403	24.903	25.903	0								0	0	0	0.7663	1	9136	9136		13.906	0	1				7350	1363	4171	4204	7132	7132					0.04034012131751297
EAYGAGPA	8	Unmodified	_EAYGAGPA_					0	0	0		nc|ENSG00000188779|P84550-2|SKOR1;nc|ENSG00000188779|P84550-3|SKOR1;ENSG00000188779|ENST00000380035|SKOR1	nc|ENSG00000188779|P84550-2|SKOR1	nc|ENSG00000188779|P84550-2|SKOR1	MULTI-MSMS	HCT116MG_D190212_S4	4	735.3314208984375	1	735.330795	734.323519	0.85467	0.00062847	-1.0958	-0.0008058	-0.24116	-0.00017733	735.330520164632	20.995	0.98685	20.785	20.24	21.227	-0.20959					23	18	2	0	0	0	0.64761	1	7193	7193		28.173	1.832	1	2091100			7351	5999	4172	4205	7133	7133					-0.054269835332320326
EAYLSSRGA	9	Unmodified	_EAYLSSRGA_					0	0	0			REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MSMS	HCT116MG_D190212_S3	3	477.2383117675781	2	477.237981	952.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.59	1	29.354	28.854	29.854	-0.23655								0	0	0	0.76077	1	10756	10756		16.149	0	1		+		7352	16469	4173	4206	7134	7134					-0.016722800046181874
ECARSGGPGP	10	Unmodified	_ECARSGGPGP_					0	0	0			REV__ENST00000417302.5_1_11:534311-535546:-|nuORF	REV__ENST00000417302.5_1_11:534311-535546:-|nuORF	MSMS	HCT116MG_D190212_S3	3	465.7086181640625	2	465.708534	929.402514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.679	1	17.761	17.261	18.261	0.081358								0	0	0	0.84701	1	5956	5956		22.736	3.2973	1		+		7353	15488	4174	4207	7135	7135					-0.0650107957058026
ECDCGEEEEC	10	Unmodified	_ECDCGEEEEC_					0	0	0		ENST00000517951.5_1_5:156822576-156936463:-|nuORF;ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant;ENSG00000135074|ENST00000257527|ADAM19;nc|ENSG00000135074|Q9H013|ADAM19	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MSMS	HCT116MG_D190212_S3	3	572.9202880859375	2	573.157022	1144.29949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.77	1	42.466	41.966	42.966	-0.30435								0	0	0	0.97116	1	15943	15943		0	0	1				7354	36	4175	4208	7136	7136					-0.2668874092637452
ECDCGEEEEC	10	Unmodified	_ECDCGEEEEC_					0	0	0		ENST00000517951.5_1_5:156822576-156936463:-|nuORF;ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant;ENSG00000135074|ENST00000257527|ADAM19;nc|ENSG00000135074|Q9H013|ADAM19	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MSMS	HCT116MG_D190212_S3	3	382.1541748046875	3	382.44044	1144.29949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.303	1	59.039	58.539	59.539	-0.26405								0	0	0	0.97116	1	22580	22580		0	0	1				7355	36	4175	4208	7137	7137					-0.2668874092637452
ECDDCGGT	8	Unmodified	_ECDDCGGT_					0	0	0		nc|ENSG00000278970|Q8NB50-2|ZFP62;nc|ENSG00000278970|Q8NB50-3|ZFP62;ENSG00000196670|ENST00000502412|ZFP62	nc|ENSG00000278970|Q8NB50-2|ZFP62	nc|ENSG00000278970|Q8NB50-2|ZFP62	MSMS	HCT116MG_D190212_S1	1	400.1151123046875	2	400.115286	798.216019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.31	1	62.31	61.81	62.81	0								0	0	0	0.8837	1	24058	24058		0.79363	0	1				7356	6096	4176	4209	7138	7138					-0.19116064521267617
ECDKFDCQYP	10	Unmodified	_ECDKFDCQYP_					0	0	0			REV__nc|ENSG00000184937|P19544-9|WT1	REV__nc|ENSG00000184937|P19544-9|WT1	MSMS	HCT116MG_D190212_S3	3	624.1372680664062	2	624.239006	1246.46346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.449	1	43.144	42.644	43.644	-0.30564								0	0	0	0.95648	1	16213	16213		3.2813	0.54611	1		+		7357	13817	4177	4210	7139	7139					-0.14991355373331317
ECGETSDP	8	Unmodified	_ECGETSDP_					0	0	0		ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	MSMS	HCT116MG_D190212_S1	1	419.1494140625	2	419.150183	836.285813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.017	1	31.017	30.517	31.517	0								0	0	0	0.8837	1	11397	11397		5.2307	0	1				7358	5373	4178	4211	7140	7140					-0.13887862581009358
ECHCVPRQP	9	Unmodified	_ECHCVPRQP_					0	0	0		ENST00000373233.7_1_20:40118442-40118508:-|nuORF	ENST00000373233.7_1_20:40118442-40118508:-|nuORF	ENST00000373233.7_1_20:40118442-40118508:-|nuORF	MSMS	HCT116MG_D190212_S3	3	534.7389526367188	2	534.739311	1067.46407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.939	1	15.022	14.522	15.522	0.083271								0	0	0	0.76886	1	4849	4849		7.9102	3.1541	1				7359	7474	4179	4212	7141	7141					-0.06696471142959126
ECHHGTYG	8	Unmodified	_ECHHGTYG_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1	REV__ENSG00000148400|ENST00000651671|NOTCH1	MSMS	HCT116MG_D190212_S1	1	452.1752014160156	2	452.174327	902.3341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.914	1	34.914	34.414	35.414	0								0	0	0	0.8837	1	12970	12970		0.79363	0	1		+		7360	12543	4180	4213	7142	7142					-0.12097324150431632
ECLLRLPLR	9	Unmodified	_ECLLRLPLR_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MSMS	HCT116MG_D190212_S1	1	556.8336181640625	2	556.834069	1111.65358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.582	1	11.582	11.082	12.082	0								0	0	0	0.77008	1	3658	3658		0.6015	0	1		+		7361	12326	4181	4214	7143	7143					0.1022234414185732
ECRRLWRR	8	Unmodified	_ECRRLWRR_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	MSMS	HCT116MG_D190212_S1	1	587.8212890625	2	587.822358	1173.63016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.303	1	12.303	11.803	12.803	0								0	0	0	0.8837	1	3940	3940		0.79363	0	1		+		7362	14274	4182	4215	7144	7144					0.05029343147907639
ECVRPPPPP	9	Unmodified	_ECVRPPPPP_					0	0	0			REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF	REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	496.2550354003906	2	496.25512	990.495686	0.45609	0.00022634	-0.15283	-7.5841E-05	0.30326	0.0001505	496.25501979339737	26.021	0.78343	26.021	25.457	26.24	0					26	14	2	0	0	0	0.13316	1	9334	9334		51.63	2.0755	1	11719000	+		7363	14654	4183	4216	7145	7145					5.844882628025516E-05
ECVRPPPPP	9	Unmodified	_ECVRPPPPP_					0	0	0			REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF	REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	496.74365234375	2	496.25512	990.495686	0.44281	0.00021975	-0.037903	-1.881E-05	0.40491	0.00020094	496.2551022504005	26.308	1.246	25.946	25.195	26.441	-0.36164					62	23	4	0	0	0	0.13316	1	9484	9484		51.63	2.0755	1	138250000	+		7364	14654	4183	4216	7146	7146					5.844882628025516E-05
ECVRPPPPP	9	Unmodified	_ECVRPPPPP_					0	0	0			REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF	REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	991.5048828125	1	991.502963	990.495686	0.85677	0.00084949	0.74035	0.00073406	1.5971	0.0015835	991.5036114304032	26.337	0.25837	25.975	25.766	26.024	-0.36164					7	4	2	0	0	0	0.010834	1	9531	9531		111.29	4.1	1	6621800	+		7365	14654	4183	4216	7147	7147					5.844882628025516E-05
ECVRPPPPP	9	Unmodified	_ECVRPPPPP_					0	0	0			REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF	REV__ENST00000263512.5_1_X:153717326-153718904:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	496.2552185058594	2	496.25512	990.495686	0.43778	0.00021725	-0.17507	-8.6878E-05	0.26272	0.00013038	496.25500654631844	26.17	1.5625	26.042	25.286	26.849	-0.12795					69	29	4	0	0	0	0.13316	1	9419	9419		51.63	0	1	62443000	+		7366	14654	4183	4216	7148	7148					5.844882628025516E-05
EDAAKTGSCL	10	Unmodified	_EDAAKTGSCL_					0	0	0		ENST00000523883.5_1_8:23399200-23400623:+|nuORF	ENST00000523883.5_1_8:23399200-23400623:+|nuORF	ENST00000523883.5_1_8:23399200-23400623:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	994.4508666992188	1	994.450987	993.44371	0.45509	0.00045256	0.061162	6.0822E-05	0.51625	0.00051338	994.4509951052534	37.718	0.2567	37.615	37.486	37.743	-0.10318					6	4	2	0	0	0	0.77749	1	14179	14179		13.906	1.6654	1	21682000			7367	8574	4184	4217	7149	7149					-0.05327363321782741
EDCCQEKT	8	Unmodified	_EDCCQEKT_					0	0	0		nc|ENSG00000145321|P02774-2|GC;ENSG00000145321|ENST00000273951|GC;nc|ENSG00000145321|P02774-3|GC	nc|ENSG00000145321|P02774-2|GC	nc|ENSG00000145321|P02774-2|GC	MSMS	HCT116MG_D190212_S2	2	478.17791748046875	2	478.178417	954.342282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3061	1	1.2996	0.79958	1.7996	-0.0065297								0	0	0	0.8837	1	427	427		0.69038	0	1				7368	3905	4185	4218	7150	7150					-0.13671558016005747
EDCDCGTSEE	10	Unmodified	_EDCDCGTSEE_					0	0	0		ENST00000520448.5_1_8:24181385-24209525:+|nuORF;nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28	ENST00000520448.5_1_8:24181385-24209525:+|nuORF	ENST00000520448.5_1_8:24181385-24209525:+|nuORF	MSMS	HCT116MG_D190212_S4	4	363.0224609375	3	363.1112	1086.31177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.74	1	11.566	11.066	12.066	-0.17441								0	0	0	0.97054	1	3628	3628		0.13989	0.13989	1				7369	1015	4186	4219	7151	7151					-0.22793381191695516
EDCGCDFP	8	Unmodified	_EDCGCDFP_					0	0	0			REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	443.1408386230469	2	443.141304	884.268054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.506	1	16.339	15.839	16.839	-0.16664								0	0	0	0.8837	1	5407	5407		0.79363	0	1		+		7370	11310	4187	4220	7152	7152					-0.17870901107528425
EDCGCHCD	8	Unmodified	_EDCGCHCD_					0	0	0		ENSG00000144655|ENST00000273153|CSRNP1	ENSG00000144655|ENST00000273153|CSRNP1	ENSG00000144655|ENST00000273153|CSRNP1	MSMS	HCT116MG_D190212_S3	3	441.113525390625	2	441.114763	880.214973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.781	1	62.558	62.058	63.058	-0.22315								0	0	0	0.8837	1	23983	23983		0	0	1				7371	3873	4188	4221	7153	7153					-0.22992602161843934
EDCGKAFNRS	10	Unmodified	_EDCGKAFNRS_					0	0	0		ENSG00000160229|ENST00000344519|ZNF66	ENSG00000160229|ENST00000344519|ZNF66	ENSG00000160229|ENST00000344519|ZNF66	MSMS	HCT116MG_D190212_S2	2	376.1714172363281	3	376.169712	1125.48731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.776	1	24.398	23.898	24.898	-0.37759								0	0	0	0.94528	1	8893	8893		5.7834	0	1				7372	4439	4189	4222	7154	7154					-0.07041753824660191
EDCYSMSREQ	10	Unmodified	_EDCYSMSREQ_					0	0	0			REV__ENST00000566127.1_1_16:29572895-29576687:-|nuORF	REV__ENST00000566127.1_1_16:29572895-29576687:-|nuORF	MSMS	HCT116MG_D190212_S1	1	624.2369995117188	2	624.236995	1246.45944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.958	1	23.958	23.458	24.458	0								0	0	0	0.95507	1	8556	8556		3.5965	0	1		+		7373	16253	4190	4223	7155	7155					-0.15393444867027029
EDDAEAYSA	9	Unmodified	_EDDAEAYSA_					0	0	0			REV__NACAD|p.V1328Cfs*176|1|0.17|ENSG00000136274|chr7:45082199-45082199|T/-|frameshift_variant	REV__NACAD|p.V1328Cfs*176|1|0.17|ENSG00000136274|chr7:45082199-45082199|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	970.364501953125	1	970.363612	969.356335	0.70414	0.00068327	0.16238	0.00015757	0.86652	0.00084084	970.3637684677908	29.702	0.21109	29.465	29.344	29.555	-0.23655					6	3	2	0	0	0	0.13706	1	10834	10834		50.855	24.514	1	3014800	+		7374	17060	4191	4224	7156	7156					-0.1295686599170267
EDDDCDDDDDD	11	Unmodified	_EDDDCDDDDDD_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	HCT116MG_D190212_S2	2	643.5347900390625	2	643.659691	1285.30483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.024	1	34.865	34.365	35.365	-0.15834								0	0	0	0.96149	1	13050	13050		0.30703	0.30703	1				7375	6030	4192	4225	7157	7157					-0.32641067329245743
EDDDDDEDDP	10	Unmodified	_EDDDDDEDDP_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;ENST00000509255.1_1_5:134109490-134113463:+|nuORF;DDX46|p.T361Rfs*7|1|0.04|ENSG00000145833|chr5:134782978-134782979|-/AAGATTAACAAAC|frameshift_variant;DDX46|p.T418Qfs*23|1|0.17|ENSG00000145833|chr5:134784448-134784448|A/-|frameshift_variant	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MSMS	HCT116MG_D190212_S1	1	590.1746215820312	2	590.175834	1178.33712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.377	1	20.377	19.877	20.877	0								0	0	0	0.96377	1	7118	7118		1.6526	0	1				7376	3926	4193	4226	7158	7158					-0.24491911863924543
EDDDDDEEER	10	Unmodified	_EDDDDDEEER_					0	0	0			REV__sp|P16733|GM_HCMVAEnvelopeglycoproteinMOS=Humancytomegalovirus(strainAD169)OX=10360GN=gMPE=1SV=1	REV__sp|P16733|GM_HCMVAEnvelopeglycoproteinMOS=Humancytomegalovirus(strainAD169)OX=10360GN=gMPE=1SV=1	MSMS	HCT116MG_D190212_S2	2	633.7133178710938	2	633.715658	1265.41676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.669	1	56.486	55.986	56.986	-0.18261								0	0	0	0.96911	1	21869	21869		0.45834	0	1		+		7377	17572	4194	4227	7159	7159					-0.20532845189950422
EDDDHDNW	8	Unmodified	_EDDDHDNW_					0	0	0			REV__GTF3C1|p.R341W|1|0.43|ENSG00000077235|chr16:27511854-27511854|G/A|missense_variant	REV__GTF3C1|p.R341W|1|0.43|ENSG00000077235|chr16:27511854-27511854|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	523.1790161132812	2	523.178318	1044.34208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.761	1	51.41	50.91	51.91	-0.35028								0	0	0	0.8837	1	19274	19274		2.5775	0	1		+		7378	16864	4195	4228	7160	7160					-0.17831518419984604
EDDEDEDDDN	10	Unmodified	_EDDEDEDDDN_					0	0	0			REV__ENSG00000102387|ENST00000356784|TAF7L	REV__ENSG00000102387|ENST00000356784|TAF7L	MSMS	HCT116MG_D190212_S3	3	605.680908203125	2	605.678741	1209.34293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.849	1	16.934	16.434	17.434	0.084467								0	0	0	0.96911	1	5621	5621		0.45834	0	1		+		7379	11151	4196	4229	7161	7161					-0.25336813352237186
EDDEPDCC	8	Unmodified	_EDDEPDCC_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;DHX57|p.N296Mfs*39|1|0.37|ENSG00000163214|chr2:38861523-38861523|T/-|frameshift_variant;nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.L732Wfs*7|2|0.33|ENSG00000163214|chr2:38847043-38847043|A/-|frameshift_variant;DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	ENSG00000163214|ENST00000457308|DHX57;DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	ENSG00000163214|ENST00000457308|DHX57	MSMS	HCT116MG_D190212_S3	3	463.1308288574219	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.031	1	11.079	10.579	11.579	0.04739								0	0	0	0.8837	1	3369	3369		0.79363	0.79363	1				7380	4588;671	4197	4230	7162	7162					-0.2174411655798849
EDDEPDCC	8	Unmodified	_EDDEPDCC_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;DHX57|p.N296Mfs*39|1|0.37|ENSG00000163214|chr2:38861523-38861523|T/-|frameshift_variant;nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.L732Wfs*7|2|0.33|ENSG00000163214|chr2:38847043-38847043|A/-|frameshift_variant;DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	ENSG00000163214|ENST00000457308|DHX57;DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	ENSG00000163214|ENST00000457308|DHX57	MSMS	HCT116MG_D190212_S4	4	463.13079833984375	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.013	1	10.832	10.332	11.332	-0.18135								0	0	0	0.8837	1	3396	3396		0.79363	0.79363	1				7381	4588;671	4197	4230	7163	7163					-0.2174411655798849
EDDEVPISP	9	Unmodified	_EDDEVPISP_					0	0	0			REV__ENSG00000090376|ENST00000261233|IRAK3	REV__ENSG00000090376|ENST00000261233|IRAK3	MULTI-SECPEP	HCT116MG_D190212_S2	2	500.756591796875	2	500.727112	999.439671	0.43574	0.00021819	2.0541	0.0010285	2.4898	0.0012467	500.72763453697814	17.134	0.36515	16.784	16.665	17.03	-0.34933					9	6	2	0	0	0	0.20553	1	5838	5838		23.148	5.0134	1	5291100	+		7382	10981	4198	4231	7164	7164					-0.06007129543843348
EDDHGDECSY	10	Unmodified	_EDDHGDECSY_					0	0	0		KCNA4|p.D222*|1|0.19|ENSG00000182255|chr11:30012015-30012016|-/A|frameshift_variant;KCNA4|p.F221Lfs*21|5|0.36|ENSG00000182255|chr11:30012016-30012016|A/-|frameshift_variant;KCNA4|p.G429Vfs*53|5|0.21|ENSG00000182255|chr11:30011393-30011393|C/-|frameshift_variant;ENSG00000182255|ENST00000328224|KCNA4	KCNA4|p.D222*|1|0.19|ENSG00000182255|chr11:30012015-30012016|-/A|frameshift_variant	KCNA4|p.D222*|1|0.19|ENSG00000182255|chr11:30012015-30012016|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	585.1904296875	2	585.188025	1168.3615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.378	1	23.378	22.878	23.878	0								0	0	0	0.95351	1	8323	8323		3.9444	0.94915	1				7383	5664	4199	4232	7165	7165					-0.2159493019137244
EDDNDEDDDDE	11	Unmodified	_EDDNDEDDDDE_					0	0	0		ENSG00000122085|ENST00000391980|MTERF4	ENSG00000122085|ENST00000391980|MTERF4	ENSG00000122085|ENST00000391980|MTERF4	MSMS	HCT116MG_D190212_S2	2	663.189697265625	2	663.192213	1324.36987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.115	1	49.951	49.451	50.451	-0.16369								0	0	0	0.96149	1	19200	19200		0.30703	0	1				7384	2750	4200	4233	7166	7166					-0.27933749531734975
EDDQEEEESDA	11	Unmodified	_EDDQEEEESDA_					0	0	0		ENSG00000183379|ENST00000331628|SYNDIG1L	ENSG00000183379|ENST00000331628|SYNDIG1L	ENSG00000183379|ENST00000331628|SYNDIG1L	MULTI-MSMS	HCT116MG_D190212_S2	2	648.2222290039062	2	648.223316	1294.43208	0.7292	0.00047268	-1.6537	-0.001072	-0.92448	-0.00059927	648.2221372615976	40.201	0.41529	40.129	39.998	40.413	-0.072838					14	7	3	0	0	0	0.74191	1	15186	15186		4.5289	0.33936	1	23464000			7385	5715	4201	4234	7167	7167					-0.2033597839272261
EDDSHGEA	8	Unmodified	_EDDSHGEA_					0	0	0			REV__nc|ENSG00000134602|Q9P289-2|STK26	REV__nc|ENSG00000134602|Q9P289-2|STK26	MSMS	HCT116MG_D190212_S4	4	430.1567077636719	2	430.156854	858.299155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.084	1	12.919	12.419	13.419	-0.16496								0	0	0	0.8837	1	4091	4091		0.69038	0	1		+		7386	12062	4202	4235	7168	7168					-0.13566288477409216
EDEAKNKF	8	Unmodified	_EDEAKNKF_					0	0	0		tr|U7SJG1|U7SJG1_FUSNUDiaminopimelateepimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02128PE=4SV=1	tr|U7SJG1|U7SJG1_FUSNUDiaminopimelateepimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02128PE=4SV=1	tr|U7SJG1|U7SJG1_FUSNUDiaminopimelateepimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02128PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	490.7379150390625	2	490.737814	979.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.907	1	38.606	38.106	39.106	-0.30137								0	0	0	0.74658	1	14428	14428		26.884	5.3467	1				7387	18314	4203	4236	7169	7169					-0.029476997244614722
EDEDDTEEAED	11	Unmodified	_EDEDDTEEAED_					0	0	0		PPM1G|p.E303D|1|0.06|ENSG00000115241|chr2:27384009-27384009|C/A|missense_variant	PPM1G|p.E303D|1|0.06|ENSG00000115241|chr2:27384009-27384009|C/A|missense_variant	PPM1G|p.E303D|1|0.06|ENSG00000115241|chr2:27384009-27384009|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	648.71484375	2	648.715324	1295.41609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.66	1	45.558	45.058	46.058	-0.1014								0	0	0	0.95636	1	17370	17370		2.9952	0	1				7388	9767	4204	4237	7170	7170					-0.21979684629650365
EDEDEDKFH	9	Unmodified	_EDEDEDKFH_					0	0	0			REV__ENSG00000178951|ENST00000322357|ZBTB7A	REV__ENSG00000178951|ENST00000322357|ZBTB7A	MSMS	HCT116MG_D190212_S1	1	582.2260131835938	2	582.228007	1162.44146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.999	1	24.999	24.499	25.499	0								0	0	0	0.768	1	8974	8974		7.9102	0	1		+		7389	13617	4205	4238	7171	7171					-0.13326120525903207
EDEDKTWFNI	10	Unmodified	_EDEDKTWFNI_					0	0	0			REV__nc|ENSG00000077157|O60237-4|PPP1R12B	REV__nc|ENSG00000077157|O60237-4|PPP1R12B	MSMS	HCT116MG_D190212_S1	1	648.7901611328125	2	648.790775	1295.567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.417	1	24.417	23.917	24.917	0								0	0	0	0.92272	1	8740	8740		10.824	0	1		+		7390	10827	4206	4239	7172	7172					-0.06896408669649645
EDEENKTS	8	Unmodified	_EDEENKTS_					0	0	0		MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant;MYCBP2|p.P4047Qfs*26|2|0.35|ENSG00000005810|chr13:77067782-77067782|G/-|frameshift_variant;MYCBP2|p.T4311Pfs*37|1|0.14|ENSG00000005810|chr13:77059619-77059619|G/-|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant	MYCBP2|p.V3749*|1|0.12|ENSG00000005810|chr13:77081486-77081486|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	476.1986083984375	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.363	1	13.198	12.698	13.698	-0.16496								0	0	0	0.8837	1	4188	4188		0.6015	0	1				7391	818	4207	4240	7173	7173					-0.09429177100378183
EDEFFDALYHD	11	Unmodified	_EDEFFDALYHD_					0	0	0			REV__ENST00000437111.1_1_10:52390343-52390514:-|nuORF	REV__ENST00000437111.1_1_10:52390343-52390514:-|nuORF	MSMS	HCT116MG_D190212_S1	1	700.7864990234375	2	700.785689	1399.55683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.751	1	23.751	23.251	24.251	0								0	0	0	0.95113	1	8473	8473		5.7319	0	1		+		7392	12429	4208	4241	7174	7174					-0.126970163948954
EDEKDKGKLK	10	Unmodified	_EDEKDKGKLK_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MSMS	HCT116MG_D190212_S1	1	595.3256225585938	2	595.324785	1188.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.945	1	24.945	24.445	25.445	0								0	0	0	0.92917	1	8952	8952		9.3831	1.2276	1				7393	1538	4209	4242	7175	7175					0.048244609809898975
EDELQLPRLP	10	Unmodified	_EDELQLPRLP_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MSMS	HCT116MG_D190212_S1	1	605.3323364257812	2	605.327328	1208.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.429	1	24.429	23.929	24.929	0								0	0	0	0.88261	1	8745	8745		18.146	4.5315	1				7394	1527	4210	4243	7176	7176					0.04412764843596051
EDEPKHDY	8	Unmodified	_EDEPKHDY_					0	0	0			REV__ENST00000472077.1_1_2:27604468-27607956:-|nuORF	REV__ENST00000472077.1_1_2:27604468-27607956:-|nuORF	MSMS	HCT116MG_D190212_S2	2	516.7169799804688	2	516.717079	1031.4196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.601	1	22.216	21.716	22.716	-0.3852								0	0	0	0.77419	1	8015	8015		24.674	1.5255	1		+		7395	11535	4211	4244	7177	7177					-0.09484880483796587
EDEPQLLKMYH	11	Unmodified	_EDEPQLLKMYH_					0	0	0		ENST00000485028.5_1_1:157670476-157670530:-|nuORF	ENST00000485028.5_1_1:157670476-157670530:-|nuORF	ENST00000485028.5_1_1:157670476-157670530:-|nuORF	MSMS	HCT116MG_D190212_S1	1	701.8391723632812	2	701.837202	1401.65985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.571	1	24.571	24.071	25.071	0								0	0	0	0.93717	1	8802	8802		13.042	0.80181	1				7396	8282	4212	4245	7178	7178					-0.024912272079291142
EDEPVRLAP	9	Unmodified	_EDEPVRLAP_					0	0	0		nc|ENSG00000143393|Q9UBF8-2|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-SECPEP	HCT116MG_D190212_S4	4	513.7687377929688	2	513.266739	1024.51892	0.16213	8.3214E-05	-0.19097	-9.8016E-05	-0.02884	-1.4803E-05	513.2664711341091	38.894	0.20271	38.513	38.388	38.591	-0.38163					5	3	2	0	0	0	0.25445	1	14284	14284		4.756	2.6963	1	3324000			7397	9484	4213	4246	7179	7179					0.007645622009249564
EDEVKPLAA	9	Unmodified	_EDEVKPLAA_					0	0	0		ENST00000447301.2_1_X:63843342-63843906:+|nuORF	ENST00000447301.2_1_X:63843342-63843906:+|nuORF	ENST00000447301.2_1_X:63843342-63843906:+|nuORF	MSMS	HCT116MG_D190212_S3	3	486.25518798828125	2	486.25584	970.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.001	1	37.699	37.199	38.199	-0.30137								0	0	0	0.768	1	14062	14062		7.9102	2.1497	1				7398	7961	4214	4247	7180	7180					0.010697574523646836
EDFESSIWY	9	Unmodified	_EDFESSIWY_					0	0	0			REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	588.2498168945312	2	588.248212	1174.48187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.787	1	35.488	34.988	35.988	-0.29995								0	0	0	0.76781	1	13201	13201		8.5933	0.68312	1		+		7399	13209	4215	4248	7181	7181					-0.09839154135443096
EDFETYIP	8	Unmodified	_EDFETYIP_					0	0	0			REV__ENST00000595305.5_1_19:6750442-6751219:+|nuORF	REV__ENST00000595305.5_1_19:6750442-6751219:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	507.2520751953125	2	507.226748	1012.43894	0.11535	5.851E-05	-0.46221	-0.00023444	-0.34686	-0.00017593	507.2264667722502	31.264	0.673	30.894	30.662	31.335	-0.37026					22	12	3	0	0	0	0.31507	1	11496	11496		5.2307	0	1	11544000	+		7400	11815	4216	4249	7182	7182					-0.06677924192911178
EDFNAFFN	8	Unmodified	_EDFNAFFN_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S1	1	502.21148681640625	2	502.211432	1002.40831	0.42033	0.00021109	-0.12404	-6.2296E-05	0.29628	0.0001488	502.2112935451091	31.71	0.52111	31.71	31.388	31.909	0					15	9	2	0	0	0	0.7524	1	11664	11664		16.942	0	1	14073000			7401	2852	4217	4250	7183	7183					-0.09279657787283213
EDFNAFFN	8	Unmodified	_EDFNAFFN_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S2	2	502.2115783691406	2	502.211432	1002.40831	0.61078	0.00030674	-0.25488	-0.00012801	0.3559	0.00017874	502.21130465571474	31.87	0.67371	31.621	31.354	32.028	-0.24883					22	12	2	0	0	0	0.7524	1	11746	11746		16.942	0	1	41017000			7402	2852	4217	4250	7184	7184					-0.09279657787283213
EDFNAFFN	8	Unmodified	_EDFNAFFN_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S3	3	501.77386474609375	2	502.211432	1002.40831	0.29683	0.00014907	0.17302	8.6891E-05	0.46985	0.00023596	502.21145601093474	32.062	0.62436	31.784	31.526	32.15	-0.27841					25	11	3	0	0	0	0.78216	2	11746	11691;11746		13.508	0	1	23059000			7403	2852	4217	4250	7185;7186	7186					-0.09279657787283213
EDFNAFFN	8	Unmodified	_EDFNAFFN_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S4	4	501.7640380859375	2	502.211432	1002.40831	0.22501	0.000113	0.086232	4.3307E-05	0.31125	0.00015631	502.21142014018284	32.196	0.57088	31.82	31.538	32.109	-0.37529					20	10	3	0	0	0	0.78216	1	11710	11710		13.508	0	1	14648000			7404	2852	4217	4250	7187	7187					-0.09279657787283213
EDFNAFFN	8	Unmodified	_EDFNAFFN_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	502.211432	1002.40831	0.61078	0.00030674	-0.25488	-0.00012801	0.3559	0.00017874	502.21130465571474	31.87	0.67371	31.621	31.354	32.028	-0.24883	-0.11286	-0.00026626	NaN	16.942	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41017000			7405	2852	4217	4250							-0.09279657787283213
EDFNLATKI	9	Unmodified	_EDFNLATKI_					0	0	0		ANKRD30B|p.I472Tfs*16|1|0.08|ENSG00000180777|chr18:14778069-14778070|-/C|frameshift_variant;nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;ANKRD30B|p.D965Ifs*30|3|0.08|ENSG00000180777|chr18:14848778-14848778|A/-|frameshift_variant;ANKRD30B|p.S1062Vfs*2|1|0.33|ENSG00000180777|chr18:14850356-14850356|A/-|frameshift_variant;nc|ENSG00000180777|Q9BXX2|ANKRD30B;ENSG00000180777|ENST00000690538|ANKRD30B	ANKRD30B|p.I472Tfs*16|1|0.08|ENSG00000180777|chr18:14778069-14778070|-/C|frameshift_variant	ANKRD30B|p.I472Tfs*16|1|0.08|ENSG00000180777|chr18:14778069-14778070|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	525.7827758789062	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.156	1	30.889	30.389	31.389	-0.26704								0	0	0	0.56943	1	11483	11483		25.399	1.3787	1				7406	138	4218	4251	7188	7188					0.016537328607682866
EDFRFRVIRFD	11	Unmodified	_EDFRFRVIRFD_					0	0	0			REV__nc|ENSG00000166912|Q9NXD2-3|MTMR10	REV__nc|ENSG00000166912|Q9NXD2-3|MTMR10	MSMS	HCT116MG_D190212_S4	4	500.5960693359375	3	500.596642	1498.7681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.587	1	50.231	49.731	50.731	-0.35535								0	0	0	0.96121	1	18800	18800		0.45452	0	1		+		7407	13128	4219	4252	7189	7189					0.03866325157491701
EDGDDDDDDDD	11	Unmodified	_EDGDDDDDDDD_					0	0	0			REV__ENSG00000230667|ENST00000596516|SETSIP	REV__ENSG00000230667|ENST00000596516|SETSIP	MSMS	HCT116MG_D190212_S2	2	620.2552490234375	2	620.665831	1239.31711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.082	1	34.923	34.423	35.423	-0.15834								0	0	0	0.96149	1	13074	13074		0.30703	0	1		+		7408	14319	4220	4253	7190	7190					-0.29297707594537314
EDGKQPPAGP	10	Unmodified	_EDGKQPPAGP_					0	0	0			REV__nc|ENSG00000072952|Q9Y6F6-8|IRAG1	REV__nc|ENSG00000072952|Q9Y6F6-8|IRAG1	MSMS	HCT116MG_D190212_S2	2	498.0179443359375	2	498.243264	994.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.339	1	26.987	26.487	27.487	-0.35254								0	0	0	0.83705	1	9926	9926		24.021	0.87215	1		+		7409	10784	4221	4254	7191	7191					-0.025482973501880224
EDGNGTQN	8	Unmodified	_EDGNGTQN_					0	0	0			REV__ENST00000581193.5_1_18:3278094-3278157:+|nuORF	REV__ENST00000581193.5_1_18:3278094-3278157:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	834.3233642578125	1	834.322416	833.315139	0.93208	0.00077766	-0.014908	-1.2438E-05	0.91717	0.00076522	834.3222121368909	35.434	0.61718	35.434	35.064	35.682	0					17	11	2	0	0	0	0.85571	1	13162	13162		4.3292	0.38484	1	51431000	+		7410	16625	4222	4255	7192	7192					-0.10818582240517571
EDGNGTQN	8	Unmodified	_EDGNGTQN_					0	0	0			REV__ENST00000581193.5_1_18:3278094-3278157:+|nuORF	REV__ENST00000581193.5_1_18:3278094-3278157:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	834.322416	833.315139	0.93208	0.00077766	-0.014908	-1.2438E-05	0.91717	0.00076522	834.3222121368909	35.434	0.61718	35.434	35.064	35.682	0	-0.029175	-2.4808E-05	NaN	4.3292	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51431000	+		7411	16625	4222	4255							-0.10818582240517571
EDGNGTQN	8	Unmodified	_EDGNGTQN_					0	0	0			REV__ENST00000581193.5_1_18:3278094-3278157:+|nuORF	REV__ENST00000581193.5_1_18:3278094-3278157:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	834.322416	833.315139	0.8831	0.00073679	0.033685	2.8104E-05	0.91679	0.0007649	834.3225376995834	35.635	0.35972	35.492	35.335	35.695	-0.14245	0.029175	1.5734E-05	NaN	4.3292	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32967000	+		7412	16625	4222	4255							-0.10818582240517571
EDGRLVIEF	9	Unmodified	_EDGRLVIEF_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	HCT116MG_D190212_S1	1	539.2826538085938	2	539.282389	1076.55022	0.58168	0.00031369	0.32511	0.00017533	0.90679	0.00048902	539.2824503052263	54.917	0.30523	54.917	54.688	54.994	0					11	5	4	0	0	0	0.49039	1	21095	21095		17.443	0	1	97647000			7413	3585	4223	4256	7193	7193					0.01501135235048423
EDGRLVIEF	9	Unmodified	_EDGRLVIEF_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	HCT116MG_D190212_S2	2	539.282958984375	2	539.282389	1076.55022	0.46284	0.0002496	0.24601	0.00013267	0.70886	0.00038227	539.282414576766	55.08	0.30481	54.892	54.765	55.07	-0.18797					16	5	4	0	0	0	0.0053819	1	21245	21245		134.3	0	1	352880000			7414	3585	4223	4256	7194	7194					0.01501135235048423
EDGRLVIEF	9	Unmodified	_EDGRLVIEF_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	HCT116MG_D190212_S3	3	539.2825317382812	2	539.282389	1076.55022	0.48341	0.0002607	-0.20054	-0.00010815	0.28287	0.00015255	539.2822401746521	55.192	0.2093	54.9	54.77	54.979	-0.2918					6	3	2	0	0	0	0.082877	1	20953	20953		61.602	0	1	6129100			7415	3585	4223	4256	7195	7195					0.01501135235048423
EDHLESLIC	9	Unmodified	_EDHLESLIC_					0	0	0		NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant;ENSG00000136937|ENST00000375147|NCBP1	NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant	NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1058.4833984375	1	1058.48229	1057.47501	0.66726	0.00070628	0.14523	0.00015372	0.81249	0.00086001	1058.4824691381896	57.827	0.20925	57.652	57.521	57.73	-0.17494					5	3	2	0	0	0	0.33687	1	22363	22363		26.884	0	1	10285000			7416	3448	4224	4257	7196	7196					-0.05142790287686694
EDIEKFFKTLK	11	Unmodified	_EDIEKFFKTLK_					0	0	0		tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	699.2965087890625	2	699.387385	1396.76022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.504	1	54.315	53.815	54.815	-0.1894								0	0	0	0.93717	1	20986	20986		13.042	4.2971	1				7417	18474	4225	4258	7197	7197					0.07770753117370077
EDIELDAKG	9	Unmodified	_EDIELDAKG_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	495.24298095703125	2	495.242929	988.471305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.872	1	36.571	36.071	37.071	-0.30113								0	0	0	0.56943	1	13639	13639		25.399	0	1				7418	521	4226	4259	7198	7198					-0.02339136789908025
EDIKRGKRKRL	11	Unmodified	_EDIKRGKRKRL_					0	0	0		CCDC82|p.T231Nfs*27|1|0.22|ENSG00000149231|chr11:96384056-96384057|-/T|frameshift_variant;nc|ENSG00000149231|Q8N4S0-2|CCDC82;ENST00000530106.1_1_11:96116391-96117917:-|nuORF;ENSG00000149231|ENST00000646818|CCDC82	CCDC82|p.T231Nfs*27|1|0.22|ENSG00000149231|chr11:96384056-96384057|-/T|frameshift_variant	CCDC82|p.T231Nfs*27|1|0.22|ENSG00000149231|chr11:96384056-96384057|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	699.9358520507812	2	699.936234	1397.85791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.377	1	31.377	30.877	31.877	0								0	0	0	0.95636	1	11542	11542		2.9952	1.6657	1				7419	356	4227	4260	7199	7199					0.1748999955675572
EDILKQKI	8	Unmodified	_EDILKQKI_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B;REV__KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant	REV__KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	493.7367858886719	2	493.797675	985.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.945	1	36.56	36.06	37.06	-0.38486								0	0	0	0.8837	1	13540	13540		8.5933	0	1		+		7420	11596;12248	4228	4261	7200	7200					0.08742913620085346
EDILSMLD	8	Unmodified	_EDILSMLD_					0	0	0			REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	935.4398803710938	1	935.439025	934.431749	0.77556	0.00072549	-0.16173	-0.00015129	0.61383	0.0005742	935.4390174885128	57.412	0.15628	57.237	57.159	57.315	-0.17494					4	2	2	0	0	0	0.070772	1	22193	22193		101.72	0	1	21283000	+		7421	13508	4229	4262	7201	7201					-0.03808980064968637
EDILSMLD	8	Unmodified	_EDILSMLD_					0	0	0			REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	935.4397583007812	1	935.439025	934.431749	0.92768	0.00086779	0.039012	3.6493E-05	0.96669	0.00090428	935.4389002257744	57.504	0.15633	57.23	57.151	57.308	-0.27434					6	2	3	0	0	0	0.070772	1	21876	21876		101.72	0	1	5482900	+		7422	13508	4229	4262	7202	7202					-0.03808980064968637
EDILSMLD	8	Unmodified	_EDILSMLD_					0	0	0			REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	935.439025	934.431749	0.77556	0.00072549	-0.16173	-0.00015129	0.61383	0.0005742	935.4390174885128	57.412	0.15628	57.237	57.159	57.315	-0.17494	0.0036316	-2.2036E-05	NaN	101.72	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21283000	+		7423	13508	4229	4262							-0.03808980064968637
EDILSMLD	8	Unmodified	_EDILSMLD_					0	0	0			REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	935.439025	934.431749	0.92768	0.00086779	0.039012	3.6493E-05	0.96669	0.00090428	935.4389002257744	57.504	0.15633	57.23	57.151	57.308	-0.27434	-0.0036316	0.00016574	NaN	101.72	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5482900	+		7424	13508	4229	4262							-0.03808980064968637
EDITQNYKY	9	Unmodified	_EDITQNYKY_					0	0	0		ENST00000567019.1_1_15:43489502-43501706:-|nuORF;EPB42|p.L487Pfs*13|1|0.39|ENSG00000166947|chr15:43206488-43206489|-/G|frameshift_variant;EPB42|p.C670Sfs*10|1|0.04|ENSG00000166947|chr15:43197369-43197370|-/TATAAAGG|frameshift_variant;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42;nc|ENSG00000166947|P16452-3|EPB42	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MSMS	HCT116MG_D190212_S4	4	587.27587890625	2	587.274761	1172.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.97	1	48.605	48.105	49.105	-0.365								0	0	0	0.768	1	18148	18148		7.9102	1.187	1				7425	4892	4230	4263	7203	7203					-0.044397763528195355
EDIYMCEFK	9	Unmodified	_EDIYMCEFK_					0	0	0			REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	588.7479858398438	2	589.248843	1176.48313	0.61839	0.00036439	-0.28582	-0.00016842	0.33257	0.00019597	589.2489809073938	46.882	0.31292	46.568	46.385	46.698	-0.31405					9	5	2	0	0	0	0.25004	1	17596	17596		15.847	4.2069	1	2794500	+		7426	17785	4231	4264	7204	7204					-0.09804979362593258
EDKADLVKY	9	Unmodified	_EDKADLVKY_					0	0	0		nc|ENSG00000169347|P55259-4|GP2;nc|ENSG00000169347|P55259-2|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2	nc|ENSG00000169347|P55259-4|GP2	nc|ENSG00000169347|P55259-4|GP2	MULTI-MSMS	HCT116MG_D190212_S1	1	540.7825317382812	2	540.782222	1079.54989	0.69597	0.00037637	-0.27667	-0.00014962	0.4193	0.00022675	540.7819951888052	41.835	0.26049	41.835	41.706	41.966	0					11	4	3	0	0	0	0.041798	1	15785	15785		78.728	28.795	1	50972000			7427	5066	4232	4265	7205	7205					0.013297155152031337
EDKADLVKY	9	Unmodified	_EDKADLVKY_					0	0	0		nc|ENSG00000169347|P55259-4|GP2;nc|ENSG00000169347|P55259-2|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2	nc|ENSG00000169347|P55259-4|GP2	nc|ENSG00000169347|P55259-4|GP2	MULTI-MSMS	HCT116MG_D190212_S2	2	540.7825317382812	2	540.782222	1079.54989	0.56561	0.00030587	0.14876	8.0449E-05	0.71437	0.00038632	540.7821639262356	41.847	0.56999	41.779	41.498	42.068	-0.068199					24	8	4	0	0	0	0.0066233	1	15826	15826		123.45	44.723	1	252180000			7428	5066	4232	4265	7206	7206					0.013297155152031337
EDKADLVKY	9	Unmodified	_EDKADLVKY_					0	0	0		nc|ENSG00000169347|P55259-4|GP2;nc|ENSG00000169347|P55259-2|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2	nc|ENSG00000169347|P55259-4|GP2	nc|ENSG00000169347|P55259-4|GP2	MULTI-MSMS	HCT116MG_D190212_S2	2	1080.558349609375	1	1080.55717	1079.54989	0.52515	0.00056746	0.54856	0.00059275	1.0737	0.0011602	1080.557697136002	41.85	0.31165	41.782	41.653	41.964	-0.068199					10	5	3	0	0	0	0.0080847	1	15850	15850		118.07	31.737	1	22189000			7429	5066	4232	4265	7207	7207					0.013297155152031337
EDKADLVKY	9	Unmodified	_EDKADLVKY_					0	0	0		nc|ENSG00000169347|P55259-4|GP2;nc|ENSG00000169347|P55259-2|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2	nc|ENSG00000169347|P55259-4|GP2	nc|ENSG00000169347|P55259-4|GP2	MULTI-MSMS	HCT116MG_D190212_S3	3	540.7824096679688	2	540.782222	1079.54989	0.46288	0.00025032	0.22048	0.00011923	0.68336	0.00036955	540.782199034693	42.108	0.36374	41.805	41.625	41.988	-0.30257					17	6	4	0	0	0	0.016701	1	15677	15677		99.799	31.718	1	43278000			7430	5066	4232	4265	7208	7208					0.013297155152031337
EDKADLVKY	9	Unmodified	_EDKADLVKY_					0	0	0		nc|ENSG00000169347|P55259-4|GP2;nc|ENSG00000169347|P55259-2|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2	nc|ENSG00000169347|P55259-4|GP2	nc|ENSG00000169347|P55259-4|GP2	MSMS	HCT116MG_D190212_S4	4	540.7822265625	2	540.782222	1079.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.196	1	41.82	41.32	42.32	-0.37565								0	0	0	0.014624	1	15499	15499		99.799	38.441	1				7431	5066	4232	4265	7209	7209					0.013297155152031337
EDKKKQKLI	9	Unmodified	_EDKKKQKLI_					0	0	0			REV__PIK3CA|p.E722K|1|0.43|ENSG00000121879|chr3:179221134-179221134|G/A|missense_variant	REV__PIK3CA|p.E722K|1|0.43|ENSG00000121879|chr3:179221134-179221134|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	565.3505249023438	2	565.350606	1128.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.951	1	23.951	23.451	24.451	0								0	0	0	0.76781	1	8553	8553		8.5933	2.3875	1		+		7432	17419	4233	4266	7210	7210					0.12746249465567416
EDKLECELP	9	Unmodified	_EDKLECELP_					0	0	0		ENST00000552478.5_1_12:56330769-56331850:+|nuORF;ENST00000551615.5_1_12:56325880-56331850:+|nuORF	ENST00000552478.5_1_12:56330769-56331850:+|nuORF	ENST00000552478.5_1_12:56330769-56331850:+|nuORF	MSMS	HCT116MG_D190212_S4	4	538.2507934570312	2	538.25244	1074.49033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.187	1	28.846	28.346	29.346	-0.34059								0	0	0	0.76603	1	10529	10529		14.838	2.3067	1				7433	8759	4234	4267	7211	7211					-0.04393923490488305
EDKLFRKKRR	10	Unmodified	_EDKLFRKKRR_					0	0	0		KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant	KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	459.2797546386719	3	459.280877	1374.8208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.363	1	51.363	50.863	51.863	0								0	0	0	0.95631	1	19622	19622		3.3196	1.99	1				7434	1514	4235	4268	7212	7212					0.14838328010955593
EDKLFRKKRRS	11	Unmodified	_EDKLFRKKRRS_					0	0	0		KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant	KDM2B|p.R1006Gfs*37|1|0.31|ENSG00000089094|chr12:121442425-121442425|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	731.9308471679688	2	731.933691	1461.85283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.445	1	32.445	31.945	32.945	0								0	0	0	0.95196	1	11973	11973		5.2969	0.39987	1				7435	1514	4236	4269	7213	7213					0.14037695694105423
EDKLLRIKI	9	Unmodified	_EDKLLRIKI_					0	0	0		KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B	KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant	KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	564.359130859375	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.249	1	57.07	56.57	57.57	-0.17904								0	0	0	0.76967	1	22102	22102		2.0598	0	1				7436	3540	4237	4270	7214	7214					0.14910839845219925
EDKMIIYAL	9	Unmodified	_EDKMIIYAL_					0	0	0		tr|U7T3D8|U7T3D8_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00392PE=3SV=1	tr|U7T3D8|U7T3D8_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00392PE=3SV=1	tr|U7T3D8|U7T3D8_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00392PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	548.291259765625	2	548.291368	1094.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.488	1	33.198	32.698	33.698	-0.29013								0	0	0	0.74436	1	12292	12292		16.942	0	1				7437	18593	4238	4271	7215	7215					0.02468134165542324
EDKQHFIPF	9	Unmodified	_EDKQHFIPF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MSMS	HCT116MG_D190212_S3	3	580.7930908203125	2	580.790381	1159.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.629	1	26.48	25.98	26.98	-0.14924								0	0	0	0.67173	1	9562	9562		20.454	2.3186	1				7438	4091	4239	4272	7216	7216					-0.0071915852806796465
EDKRYKKHPPS	11	Unmodified	_EDKRYKKHPPS_					0	0	0			REV__ENSG00000157502|ENST00000357175|PWWP3B	REV__ENSG00000157502|ENST00000357175|PWWP3B	MSMS	HCT116MG_D190212_S4	4	692.8721313476562	2	692.870225	1383.7259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.225	1	40.848	40.348	41.348	-0.37732								0	0	0	0.95343	1	15153	15153		4.5289	1.7937	1		+		7439	12754	4240	4273	7217	7217					0.04938349749113513
EDLAKWRSAY	10	Unmodified	_EDLAKWRSAY_					0	0	0			REV__nc|ENSG00000121390|Q8WXF1-2|PSPC1	REV__nc|ENSG00000121390|Q8WXF1-2|PSPC1	MULTI-MSMS	HCT116MG_D190212_S2	2	619.812255859375	2	619.811845	1237.60914	0.76851	0.00047633	-0.35348	-0.00021909	0.41503	0.00025724	619.8116632959443	42.716	0.31182	42.646	42.429	42.741	-0.069981					9	5	2	0	0	0	0.6277	1	16185	16185		26.268	0	1	46386000	+		7440	11716	4241	4274	7218	7218					-0.0001638847061258275
EDLHMHHIR	9	Unmodified	_EDLHMHHIR_					0	0	0		AGAP5|p.P283Afs*33|1|0.07|ENSG00000172650|chr10:73675798-73675814|TGCCCTGTTTAATGGGG/-|frameshift_variant;ENSG00000172650|ENST00000374094|AGAP5	AGAP5|p.P283Afs*33|1|0.07|ENSG00000172650|chr10:73675798-73675814|TGCCCTGTTTAATGGGG/-|frameshift_variant	AGAP5|p.P283Afs*33|1|0.07|ENSG00000172650|chr10:73675798-73675814|TGCCCTGTTTAATGGGG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	594.2885131835938	2	594.290556	1186.56656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.915	1	36.613	36.113	37.113	-0.30113								0	0	0	0.76694	1	13656	13656		11.64	0.14559	1				7441	74	4242	4275	7219	7219					-0.019260620798604577
EDLHRIIMLP	10	Unmodified	_EDLHRIIMLP_					0	0	0			REV__AGR2|p.H76R|1|0.1|ENSG00000106541|chr7:16801180-16801180|T/C|missense_variant	REV__AGR2|p.H76R|1|0.1|ENSG00000106541|chr7:16801180-16801180|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	618.8429565429688	2	618.842091	1235.66963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.915	1	46.544	46.044	47.044	-0.37072								0	0	0	0.94339	1	17336	17336		6.2058	0	1		+		7442	9888	4243	4276	7220	7220					0.06122005588099455
EDLKFKPVP	9	Unmodified	_EDLKFKPVP_					0	0	0			REV__SETD1A|p.C243Afs*254|1|0.08|ENSG00000099381|chr16:30964176-30964176|C/-|frameshift_variant	REV__SETD1A|p.C243Afs*254|1|0.08|ENSG00000099381|chr16:30964176-30964176|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	358.2066650390625	3	358.206092	1071.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.025	1	33.64	33.14	34.14	-0.38426								0	0	0	0.76948	1	12408	12408		2.7352	0	1		+		7443	11045	4244	4277	7221	7221					0.06351200137146407
EDLKKIEY	8	Unmodified	_EDLKKIEY_					0	0	0		ENST00000603513.1_1_7:130039868-130040375:-|nuORF;ENSG00000106477|ENST00000223208|CEP41	ENST00000603513.1_1_7:130039868-130040375:-|nuORF	ENST00000603513.1_1_7:130039868-130040375:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	519.2848510742188	2	519.279315	1036.54408	0.35362	0.00018363	0.27373	0.00014214	0.62736	0.00032577	519.7809355092033	40.647	0.26036	40.345	40.163	40.423	-0.30161					9	4	3	0	0	0	0.84507	1	15024	15024		6.2058	0.44535	1	6747900			7444	9103	4245	4278	7222	7222					0.027266170035318282
EDLKKLQRRP	10	Unmodified	_EDLKKLQRRP_					0	0	0			REV__ENST00000488618.1_1_20:43595209-43600800:+|nuORF	REV__ENST00000488618.1_1_20:43595209-43600800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	641.8826293945312	2	641.883136	1281.75172	0.55364	0.00035537	-0.91465	-0.0005871	-0.36102	-0.00023173	641.8824596483349	54.381	1.1782	54.191	53.687	54.865	-0.1894					30	22	2	0	0	0	0.87945	1	20966	20966		3.5965	0	1	19398000	+		7445	11114	4246	4279	7223	7223					0.12211243991396259
EDLLWNQG	8	Unmodified	_EDLLWNQG_					0	0	0			REV__ENSG00000128917|ENST00000249749|DLL4	REV__ENSG00000128917|ENST00000249749|DLL4	MULTI-SECPEP	HCT116MG_D190212_S2	2	487.2635498046875	2	487.732532	973.45051	0.11415	5.5673E-05	-0.53948	-0.00026312	-0.42533	-0.00020745	487.73216800719774	38.338	0.20669	38.245	38.115	38.322	-0.09301					5	3	2	0	0	0	0.28869	1	14407	14407		24.674	7.7316	1	9518600	+		7446	11882	4247	4280	7224	7224					-0.03727682378894315
EDLNAKWQ	8	Unmodified	_EDLNAKWQ_					0	0	0		ENST00000505186.1_1_4:2743986-2747794:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	MSMS	HCT116MG_D190212_S4	4	502.0708312988281	2	502.245806	1002.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.291	1	40.914	40.414	41.414	-0.37732								0	0	0	0.85589	1	15180	15180		18.135	2.2878	1				7447	5036	4248	4281	7225	7225					-0.02407993487577187
EDLQENHIS	9	Unmodified	_EDLQENHIS_					0	0	0		nc|ENSG00000204930|A6H8Z2-3|FAM221B;ENSG00000204930|ENST00000423537|FAM221B	nc|ENSG00000204930|A6H8Z2-3|FAM221B	nc|ENSG00000204930|A6H8Z2-3|FAM221B	MULTI-SECPEP	HCT116MG_D190212_S3	3	543.3013305664062	2	542.74891	1083.48327	0.45248	0.00024558	-0.35191	-0.000191	0.10057	5.4583E-05	542.7493263957876	37.044	0.20834	36.743	36.613	36.821	-0.30113					5	3	2	0	0	0	0.26734	1	13730	13730		4.3292	0	1	2411400			7448	6356	4249	4282	7226	7226					-0.055135200467020695
EDLRPRKLEPP	11	Unmodified	_EDLRPRKLEPP_					0	0	0			REV__ENSG00000159259|ENST00000314103|CHAF1B	REV__ENSG00000159259|ENST00000314103|CHAF1B	MSMS	HCT116MG_D190212_S3	3	675.147216796875	2	675.380426	1348.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.348	1	49.032	48.532	49.532	-0.31596								0	0	0	0.95273	1	18581	18581		4.897	1.9018	1		+		7449	12800	4250	4283	7227	7227					0.0858752040892341
EDLVAIGY	8	Unmodified	_EDLVAIGY_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S1	1	879.4461059570312	1	879.445825	878.438549	0.62185	0.00054688	-0.10708	-9.4175E-05	0.51476	0.00045271	879.445540282271	48.911	0.25829	48.911	48.768	49.027	0					7	4	2	0	0	0	0.13911	1	18644	18644		86.121	0	1	25471000			7450	1423	4251	4284	7228	7228					-0.005532991220889016
EDLVAIGY	8	Unmodified	_EDLVAIGY_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S3	3	879.4461669921875	1	879.445825	878.438549	0.73605	0.00064732	0.077076	6.7784E-05	0.81313	0.0007151	879.4457460398975	49.369	0.52457	49.053	48.816	49.341	-0.31596					22	9	3	0	0	0	0.13911	1	18557	18557		86.121	0	1	75113000			7451	1423	4251	4284	7229	7229					-0.005532991220889016
EDLVAIGY	8	Unmodified	_EDLVAIGY_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S4	4	879.4462890625	1	879.445825	878.438549	0.66593	0.00058565	0.1149	0.00010105	0.78083	0.0006867	879.4456936939629	49.403	0.45207	49.041	48.817	49.269	-0.36213					17	8	3	0	0	0	0.13911	1	18310	18310		86.121	0	1	22733000			7452	1423	4251	4284	7230	7230					-0.005532991220889016
EDMEISVKELR	11	Unmodified	_EDMEISVKELR_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MSMS	HCT116MG_D190212_S1	1	674.8433837890625	2	674.842484	1347.67042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.062	1	38.062	37.562	38.562	0								0	0	0	0.094462	1	14239	14239		82.445	55.222	1				7453	920	4252	4285	7231	7231					0.010487554465044013
EDMGYKMLIL	10	Unmodified	_EDMGYKMLIL_					0	0	0		ENST00000287934.3_1_7:90897070-90897304:+|nuORF	ENST00000287934.3_1_7:90897070-90897304:+|nuORF	ENST00000287934.3_1_7:90897070-90897304:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	404.8711853027344	3	404.871616	1211.59302	-0.028125	-1.1387E-05	-0.55727	-0.00022562	-0.5854	-0.00023701	404.8712582776518	26.527	0.208	26.527	26.397	26.605	0					5	3	2	0	0	0	0.88076	1	9619	9619		1.5923	0.26264	1	3975500			7454	6954	4253	4286	7232	7232					-0.004315540233847059
EDMLKVYEA	9	Unmodified	_EDMLKVYEA_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	HCT116MG_D190212_S2	2	548.792724609375	2	549.262807	1096.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.16	1	41.092	40.592	41.592	-0.068199								0	0	0	0.095757	1	15543	15543		57.249	24.944	1				7455	1620	4254	4287	7233	7233					-0.03333333110822423
EDMLKVYEA	9	Unmodified	_EDMLKVYEA_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	HCT116MG_D190212_S3	3	549.26318359375	2	549.262807	1096.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.547	1	41.244	40.744	41.744	-0.30257								0	0	0	0.04525	1	15455	15455		71.708	38.922	1				7456	1620	4254	4287	7234	7234					-0.03333333110822423
EDNDDDNS	8	Unmodified	_EDNDDDNS_					0	0	0		STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	462.146484375	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.397	1	40.327	39.827	40.827	-0.070328								0	0	0	0.8837	1	15233	15233		0.69038	0	1				7457	18240	4255	4288	7235	7235					-0.18543503927890015
EDNDDDNS	8	Unmodified	_EDNDDDNS_					0	0	0		STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	462.146728515625	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.542	1	16.628	16.128	17.128	0.085424								0	0	0	0.8837	1	5497	5497		0.79363	0	1				7458	18240	4255	4288	7236	7236					-0.18543503927890015
EDNDDDNS	8	Unmodified	_EDNDDDNS_					0	0	0		STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	462.1466369628906	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.638	1	42.335	41.835	42.835	-0.30352								0	0	0	0.8837	1	15889	15889		0.69038	0	1				7459	18240	4255	4288	7237	7237					-0.18543503927890015
EDNDDDNS	8	Unmodified	_EDNDDDNS_					0	0	0		STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	462.14666748046875	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.912	1	44.603	44.103	45.103	-0.30927								0	0	0	0.8837	1	16801	16801		0.79363	0	1				7460	18240	4255	4288	7238	7238					-0.18543503927890015
EDNDDDNS	8	Unmodified	_EDNDDDNS_					0	0	0		STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	462.1466979980469	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.629	1	46.315	45.815	46.815	-0.31405								0	0	0	0.8837	1	17488	17488		0.79363	0	1				7461	18240	4255	4288	7239	7239					-0.18543503927890015
EDNHLPPQ	8	Unmodified	_EDNHLPPQ_					0	0	0		ENSG00000133193|ENST00000405159|FAM104A;nc|ENSG00000133193|Q969W3|VCF1;FAM104A|p.E82K|1|0.18|ENSG00000133193|chr17:73227242-73227242|C/T|missense_variant	ENSG00000133193|ENST00000405159|FAM104A	ENSG00000133193|ENST00000405159|FAM104A	MULTI-MSMS	HCT116MG_D190212_S4	4	475.73822021484375	2	475.222331	948.430109	0.36011	0.00017113	-0.71509	-0.00033983	-0.35498	-0.0001687	475.22197129859313	26.352	0.15603	26.052	25.974	26.13	-0.30087					4	2	2	0	0	0	0.64404	2	9397	9397;9414		28.487	6.7402	1	2307400			7462	3233	4256	4289	7240;7241	7240					-0.04616853038703539
EDNNCNDDDDD	11	Unmodified	_EDNNCNDDDDD_					0	0	0			REV__ENSG00000136541|ENST00000410096|ERMN	REV__ENSG00000136541|ENST00000410096|ERMN	MSMS	HCT116MG_D190212_S2	2	642.1826782226562	2	642.183668	1282.35278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.415	1	42.345	41.845	42.845	-0.069984								0	0	0	0.96149	1	16054	16054		0.30703	0	1		+		7463	12136	4257	4290	7242	7242					-0.2770994861853069
EDNPAVTQTY	10	Unmodified	_EDNPAVTQTY_					0	0	0			REV__RASGRF1|p.S190Y|1|0.35|ENSG00000058335|chr15:79049551-79049551|G/T|missense_variant	REV__RASGRF1|p.S190Y|1|0.35|ENSG00000058335|chr15:79049551-79049551|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	569.2548828125	2	569.256568	1136.49858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.245	1	32.955	32.455	33.455	-0.29013								0	0	0	0.84701	1	12195	12195		22.736	0.98964	1		+		7464	17462	4258	4291	7243	7243					-0.06420653249506358
EDNSYLSPV	9	Unmodified	_EDNSYLSPV_					0	0	0			REV__ENSG00000106278|ENST00000393386|PTPRZ1	REV__ENSG00000106278|ENST00000393386|PTPRZ1	MSMS	HCT116MG_D190212_S3	3	512.2374267578125	2	512.235104	1022.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.477	1	33.187	32.687	33.687	-0.29013								0	0	0	0.768	1	12287	12287		7.9102	2.1497	1		+		7465	11290	4259	4292	7244	7244					-0.05467423306947694
EDPAITDIKT	10	Unmodified	_EDPAITDIKT_					0	0	0			REV__EPHA2|p.E241*|1|0.21|ENSG00000142627|chr1:16148481-16148482|-/C|frameshift_variant	REV__EPHA2|p.E241*|1|0.21|ENSG00000142627|chr1:16148481-16148482|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	551.5696411132812	2	551.784961	1101.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.375	1	48.231	47.731	48.731	-0.1437								0	0	0	0.91971	1	18480	18480		11.495	2.7493	1		+		7466	12361	4260	4293	7245	7245					0.008653943070157766
EDPEPPVAAPD	11	Unmodified	_EDPEPPVAAPD_					0	0	0		ENST00000568925.1_1_16:77246444-77246825:+|nuORF;ENSG00000205078|ENST00000378644|SYCE1L	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	MSMS	HCT116MG_D190212_S1	1	568.7601318359375	2	568.758943	1135.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.528	1	23.528	23.028	24.028	0								0	0	0	0.94012	1	8383	8383		11.495	1.4208	1				7467	6365	4261	4294	7246	7246					-0.0589976910673613
EDPEVWLVP	9	Unmodified	_EDPEVWLVP_					0	0	0		ENST00000360370.8_1_3:125734383-125735693:-|nuORF	ENST00000360370.8_1_3:125734383-125735693:-|nuORF	ENST00000360370.8_1_3:125734383-125735693:-|nuORF	MSMS	HCT116MG_D190212_S4	4	542.271240234375	2	542.27149	1082.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.887	1	43.512	43.012	44.012	-0.37411								0	0	0	0.76781	1	16148	16148		8.5933	0.68312	1				7468	7348	4262	4295	7247	7247					-0.009536695135238915
EDPMSSGC	8	Unmodified	_EDPMSSGC_					0	0	0			REV__ENSG00000180574|ENST00000538173|EIF2S3B	REV__ENSG00000180574|ENST00000538173|EIF2S3B	MSMS	HCT116MG_D190212_S2	2	413.1416931152344	2	413.141304	824.268054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.269	1	62.133	61.633	62.633	-0.13585								0	0	0	0.8837	1	24132	24132		0.69038	0.69038	1		+		7469	13665	4263	4296	7248	7248					-0.15110901107516383
EDPNEYDSDF	10	Unmodified	_EDPNEYDSDF_					0	0	0			REV__nc|ENSG00000095585|Q8WV28-3|BLNK	REV__nc|ENSG00000095585|Q8WV28-3|BLNK	MULTI-SECPEP	HCT116MG_D190212_S3	3	615.2861328125	2	615.725298	1229.43604	0.35744	0.00022008	0.39301	0.00024199	0.75045	0.00046207	615.725396285383	23.243	0.20842	23.204	23.083	23.291	-0.03968					5	3	2	0	0	0	0.27864	1	8159	8159		22.736	3.4793	1	3868200	+		7470	11028	4264	4297	7249	7249					-0.16949844108376055
EDPSYKWREEH	11	Unmodified	_EDPSYKWREEH_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;ARHGEF5|p.A447Qfs*7|1|0.08|ENSG00000050327|chr7:144364003-144364003|C/-|frameshift_variant;ENSG00000213214|ENST00000378115|ARHGEF35	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MSMS	HCT116MG_D190212_S2	2	738.3692626953125	2	738.33113	1474.64771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.781	1	21.396	20.896	21.896	-0.38503								0	0	0	0.94538	1	7684	7684		8.7454	0	1				7471	1050	4265	4298	7250	7250					-0.070631276267477
EDPWINPL	8	Unmodified	_EDPWINPL_					0	0	0		chr10:53026127-53029911|183|15.51|0.0|20.57|-|2|TE_info:HERV30-int,HERV30-int_dup42,ERV1,LTR,acceptor,-,53025889,53026127|None,LINC02672|3	chr10:53026127-53029911|183|15.51|0.0|20.57|-|2|TE_info:HERV30-int,HERV30-int_dup42,ERV1,LTR,acceptor,-,53025889,53026127|None,LINC02672|3	chr10:53026127-53029911|183|15.51|0.0|20.57|-|2|TE_info:HERV30-int,HERV30-int_dup42,ERV1,LTR,acceptor,-,53025889,53026127|None,LINC02672|3	MULTI-MSMS	HCT116MG_D190212_S2	2	492.24542236328125	2	492.245275	982.475997	0.33006	0.00016247	0.0086303	4.2482E-06	0.33869	0.00016672	492.24528615135296	50.39	0.31464	50.218	50.036	50.351	-0.1719					8	5	2	0	0	0	0.77285	1	19352	19352		14.582	0	1	12629000			7472	439	4266	4299	7251	7251					-0.015942078564876283
EDPWKTNY	8	Unmodified	_EDPWKTNY_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7386474609375	2	526.737814	1051.46108	0.66685	0.00035126	-0.090138	-4.7479E-05	0.57672	0.00030378	526.7379167918365	36.245	0.31035	36.117	35.916	36.226	-0.12799					14	5	3	0	0	0	0.21275	1	13570	13570		71.134	35.089	1	21146000			7473	3640	4267	4300	7252	7252					-0.06259699724478196
EDQAVVETV	9	Unmodified	_EDQAVVETV_					0	0	0		nc|ENSG00000185453|Q86XI8|ZSWIM9;ENSG00000185453|ENST00000614654|ZSWIM9	nc|ENSG00000185453|Q86XI8|ZSWIM9	nc|ENSG00000185453|Q86XI8|ZSWIM9	MSMS	HCT116MG_D190212_S2	2	495.24322509765625	2	495.242929	988.471305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.242	1	32.011	31.511	32.511	-0.23009								0	0	0	0.74436	1	11923	11923		16.942	0	1				7474	5830	4268	4301	7253	7253					-0.02339136789908025
EDQGCFTCA	9	Unmodified	_EDQGCFTCA_					0	0	0			REV__TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant	REV__TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	487.17315673828125	2	487.173135	972.331717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.842	1	16.842	16.342	17.342	0								0	0	0	0.56943	1	5695	5695		25.399	5.9603	1		+		7475	13270	4269	4302	7254	7254					-0.15555540670425216
EDQGCFTCA	9	Unmodified	_EDQGCFTCA_					0	0	0			REV__TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant	REV__TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	487.1731872558594	2	487.173135	972.331717	0.22998	0.00011204	-0.10193	-4.9655E-05	0.12806	6.2385E-05	487.17317468163185	17.042	0.46857	16.692	16.509	16.978	-0.34933					14	8	3	0	0	0	0.2853	1	5780	5780		32.305	5.4218	1	20867000	+		7476	13270	4269	4302	7255	7255					-0.15555540670425216
EDQGCFTCA	9	Unmodified	_EDQGCFTCA_					0	0	0			REV__TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant	REV__TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	487.173135	972.331717	0.31882	0.00015532	-0.065495	-3.1908E-05	0.25332	0.00012341	487.17299195141624	16.811	0.1561	16.811	16.681	16.837	0	0.059463	1.2393E-05	NaN	32.305	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3819800	+		7477	13270	4269	4302							-0.15555540670425216
EDQLLTPPP	9	Unmodified	_EDQLLTPPP_					0	0	0			REV__NFE2L3|p.G654Rfs*2|1|0.18|ENSG00000050344|chr7:26185655-26185656|-/A|frameshift_variant	REV__NFE2L3|p.G654Rfs*2|1|0.18|ENSG00000050344|chr7:26185655-26185656|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	505.19488525390625	2	505.263665	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.953	1	54.661	54.161	55.161	-0.2918								0	0	0	0.76781	1	20834	20834		8.5933	0	1		+		7478	10617	4270	4303	7256	7256					0.008860439694331035
EDQPFYRAK	9	Unmodified	_EDQPFYRAK_					0	0	0		CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant;ENSG00000016602|ENST00000370563|CLCA4;CLCA4|p.I182Sfs*56|1|0.41|ENSG00000016602|chr1:86563749-86563749|A/-|frameshift_variant	CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	577.2869873046875	2	577.285463	1152.55637	0.32626	0.00018834	3.213	0.0018548	3.5392	0.0020431	577.2875006809014	28.185	0.57367	27.979	27.707	28.281	-0.20593					15	10	3	0	0	0	0.45867	1	10211	10211		19.257	1.1106	1	7480800			7479	471	4271	4304	7257	7257					-0.013803465334376597
EDQRMWPKWGL	11	Unmodified	_EDQRMWPKWGL_					0	0	0		ENST00000443024.6_1_9:95050095-95050472:-|nuORF;ENST00000447699.6_1_9:95050095-95051701:-|nuORF	ENST00000443024.6_1_9:95050095-95050472:-|nuORF	ENST00000443024.6_1_9:95050095-95050472:-|nuORF	MSMS	HCT116MG_D190212_S1	1	723.3563232421875	2	723.353354	1444.69215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.809	1	55.809	55.309	56.309	0								0	0	0	0.95636	1	21440	21440		2.9952	0.26005	1				7480	7935	4272	4305	7258	7258					-0.012403950142925169
EDRAKRRKLR	10	Unmodified	_EDRAKRRKLR_					0	0	0		ENSG00000099954|ENST00000262608|CECR2;CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant	ENSG00000099954|ENST00000262608|CECR2	ENSG00000099954|ENST00000262608|CECR2	MSMS	HCT116MG_D190212_S1	1	664.4031372070312	2	664.405101	1326.79565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.989	1	25.989	25.489	26.489	0								0	0	0	0.96377	1	9372	9372		1.6526	0.17072	1				7481	1649	4273	4306	7259	7259					0.14532273208396873
EDRDESEVSDE	11	Unmodified	_EDRDESEVSDE_					0	0	0		GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000515868.5_1_4:845337-862348:-|nuORF;ENST00000509566.1_1_4:844107-866085:-|nuORF	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;ENST00000509566.1_1_4:844107-866085:-|nuORF	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	655.2578735351562	2	655.25495	1308.49535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.404	1	21.021	20.521	21.521	-0.38288								0	0	0	0.94145	1	7531	7531		10.8	1.4164	1				7482	9177;8488	4274	4307	7260	7260					-0.1465599288485464
EDRDLFVM	8	Unmodified	_EDRDLFVM_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7421264648438	2	512.742042	1023.46953	0.29623	0.00015189	-0.020581	-1.0553E-05	0.27565	0.00014133	512.7419133431467	50.704	0.4682	50.532	50.245	50.713	-0.1719					15	8	3	0	0	0	0.26254	1	19426	19426		62.573	22.615	1	96591000			7483	2119	4275	4308	7261	7261					-0.04126469079506023
EDRLGVQGTS	10	Unmodified	_EDRLGVQGTS_					0	0	0			REV__ENST00000559886.1_1_15:64045105-64067822:-|nuORF	REV__ENST00000559886.1_1_15:64045105-64067822:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.2088012695312	2	531.264727	1060.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.427	1	40.126	39.626	40.626	-0.30161								0	0	0	0.93466	1	15008	15008		8.1555	0.24537	1		+		7484	16481	4276	4309	7262	7262					-0.012935272927506958
EDRPLEDVPQ	10	Unmodified	_EDRPLEDVPQ_					0	0	0		ENSG00000180964|ENST00000372685|TCEAL8	ENSG00000180964|ENST00000372685|TCEAL8	ENSG00000180964|ENST00000372685|TCEAL8	MULTI-SECPEP	HCT116MG_D190212_S1	1	598.7787475585938	2	599.290942	1196.56733	0.44162	0.00026466	0.30018	0.0001799	0.7418	0.00044455	599.7925754310912	25.066	0.36676	25.066	24.882	25.249	0					11	6	2	0	0	0	0.30895	1	8932	8932		1.3295	0	1	4271100			7485	5616	4277	4310	7263	7263					-0.02308988949812374
EDRVVMWP	8	Unmodified	_EDRVVMWP_					0	0	0			REV__ZFP30|p.T131Pfs*161|1|0.12|ENSG00000120784|chr19:37636150-37636150|T/-|frameshift_variant	REV__ZFP30|p.T131Pfs*161|1|0.12|ENSG00000120784|chr19:37636150-37636150|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	516.253662109375	2	516.252577	1030.4906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.26	1	17.26	16.76	17.76	0								0	0	0	0.8837	1	5863	5863		9.3474	0	1		+		7486	11699	4278	4311	7264	7264					-0.02342458979978801
EDSDLDMTF	9	Unmodified	_EDSDLDMTF_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MSMS	HCT116MG_D190212_S1	1	536.8327026367188	2	536.710605	1071.40666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.622	1	37.622	37.122	38.122	0								0	0	0	0.768	1	14062	14062		7.9102	0	1		+		7487	11970	4279	4312	7265	7265					-0.1261907965820228
EDSFYCGP	8	Unmodified	_EDSFYCGP_					0	0	0			REV__nc|ENSG00000173947|Q8TCI5-3|CIMAP3	REV__nc|ENSG00000173947|Q8TCI5-3|CIMAP3	MSMS	HCT116MG_D190212_S4	4	459.1722717285156	2	459.170918	916.327284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.772	1	19.578	19.078	20.078	-0.19367								0	0	0	0.8837	1	6727	6727		6.3541	0.59368	1		+		7488	17218	4280	4313	7266	7266					-0.1342268182169164
EDSGLFKH	8	Unmodified	_EDSGLFKH_					0	0	0			REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF	REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	466.72705078125	2	466.727249	931.439946	-0.16145	-7.5354E-05	3.2395	0.0015119	3.078	0.0014366	466.7271898803473	22.814	0.31322	22.576	22.393	22.706	-0.23758					10	5	3	0	0	0	0.7524	1	7984	7984		16.942	0	1	3656500	+		7489	11350	4281	4314	7267	7267					-0.028516650333358484
EDSKKPPQP	9	Unmodified	_EDSKKPPQP_					0	0	0		SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant;SCN4A|p.D1309Tfs*4|1|0.19|ENSG00000007314|chr17:63943842-63943842|C/-|frameshift_variant;ENSG00000007314|ENST00000435607|SCN4A	SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant	SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	513.3743286132812	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.812	1	23.751	23.251	24.251	-0.061449								0	0	0	0.74436	1	8426	8426		16.942	0.79319	1				7490	844	4282	4315	7268	7268					0.007645622009476938
EDSPFLQSR	9	Unmodified	_EDSPFLQSR_					0	0	0		ENST00000462809.1_1_7:151127136-151133911:-|nuORF;ENST00000476631.5_1_7:151127136-151135044:-|nuORF;CRYGN|p.D137Gfs*8|1|0.2|ENSG00000127377|chr7:151436186-151436187|-/C|frameshift_variant;ENSG00000127377|ENST00000337323|CRYGN	ENST00000462809.1_1_7:151127136-151133911:-|nuORF	ENST00000462809.1_1_7:151127136-151133911:-|nuORF	MSMS	HCT116MG_D190212_S4	4	360.5116271972656	3	360.176972	1077.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.378	1	21.16	20.66	21.66	-0.21832								0	0	0	0.71946	1	7376	7376		12.873	0.69786	1				7491	603	4283	4316	7269	7269					-0.02656625804434043
EDSPLAPE	8	Unmodified	_EDSPLAPE_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MSMS	HCT116MG_D190212_S3	3	428.7716979980469	2	429.19799	856.381428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.755	1	28.538	28.038	29.038	-0.21624								0	0	0	0.85589	1	10419	10419		18.135	3.5533	1				7492	1177	4284	4317	7270	7270					-0.052507663984670216
EDSPSFPRP	9	Unmodified	_EDSPSFPRP_					0	0	0		ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2426147460938	2	516.243264	1030.47197	0.11555	5.965E-05	-1.6141	-0.00083325	-1.4985	-0.0007736	516.242088267046	25.582	0.20766	25.213	25.135	25.343	-0.36914					5	3	2	0	0	0	0.47829	1	9250	9250		18.135	0	1	13073000			7493	4874	4285	4318	7271	7271					-0.04204297350179331
EDSRKAKY	8	Unmodified	_EDSRKAKY_					0	0	0			REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	MSMS	HCT116MG_D190212_S3	3	498.76025390625	2	498.759081	995.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.674	1	34.377	33.877	34.877	-0.29707								0	0	0	0.72655	1	12771	12771		28.487	4.4663	1		+		7494	14097	4286	4319	7272	7272					0.005676954037539872
EDSSCSCM	8	Unmodified	_EDSSCSCM_					0	0	0			REV__TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	REV__TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	431.1262512207031	2	431.124796	860.23504	0.058595	2.5262E-05	2.1459	0.00092514	2.2045	0.0009504	431.1261619649228	22.894	0.50844	22.876	22.647	23.156	-0.018869					18	9	3	0	0	0	0.86564	1	8061	8061		2.5775	0.27475	1	4581100	+		7495	12926	4287	4320	7273	7273					-0.2006685122187264
EDSSCSCM	8	Unmodified	_EDSSCSCM_					0	0	0			REV__TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	REV__TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	431.12603759765625	2	431.124796	860.23504	0.033482	1.4435E-05	2.1637	0.00093281	2.1971	0.00094725	431.12608107905936	23.074	0.47051	22.836	22.655	23.126	-0.23758					20	8	3	0	0	0	0.86564	1	8084	8084		2.5775	0.27475	1	4242800	+		7496	12926	4287	4320	7274	7274					-0.2006685122187264
EDSSCSCM	8	Unmodified	_EDSSCSCM_					0	0	0			REV__TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	REV__TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	431.124796	860.23504	0.058595	2.5262E-05	2.1459	0.00092514	2.2045	0.0009504	431.1261619649228	22.894	0.50844	22.876	22.647	23.156	-0.018869	0.019585	-6.2159E-06	NaN	2.5775	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4581100	+		7497	12926	4287	4320							-0.2006685122187264
EDSSCSCM	8	Unmodified	_EDSSCSCM_					0	0	0			REV__TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	REV__TGFBR2|p.H523Rfs*19|1|0.27|ENSG00000163513|chr3:30691458-30691459|-/GACC|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	431.124796	860.23504	0.033482	1.4435E-05	2.1637	0.00093281	2.1971	0.00094725	431.12608107905936	23.074	0.47051	22.836	22.655	23.126	-0.23758	-0.019585	9.1253E-06	NaN	2.5775	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4242800	+		7498	12926	4287	4320							-0.2006685122187264
EDSSEDEDDEE	11	Unmodified	_EDSSEDEDDEE_					0	0	0		ENSG00000215474|ENST00000425639|SKOR2	ENSG00000215474|ENST00000425639|SKOR2	ENSG00000215474|ENST00000425639|SKOR2	MSMS	HCT116MG_D190212_S1	1	649.8079833984375	2	649.704956	1297.39536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.261	1	25.261	24.761	25.761	0								0	0	0	0.95113	1	9079	9079		5.7319	0	1				7499	6451	4288	4321	7275	7275					-0.24144275009302874
EDTAKADY	8	Unmodified	_EDTAKADY_					0	0	0			REV__tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	REV__tr|U7SXU8|U7SXU8_FUSNUIron(III)transportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00942PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	456.7010192871094	2	456.700897	911.387241	0.15657	7.1505E-05	0.12845	5.8662E-05	0.28501	0.00013017	456.70096542828486	20.765	0.26188	20.386	20.236	20.498	-0.37949					6	4	2	0	0	0	0.46892	1	7304	7304		43.858	0	1	4454200	+		7500	17864	4289	4322	7276	7276					-0.07199667886811767
EDTFIEKI	8	Unmodified	_EDTFIEKI_					0	0	0		ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	MULTI-MSMS	HCT116MG_D190212_S2	2	497.7582092285156	2	497.758215	993.501877	0.37769	0.000188	0.0074209	3.6938E-06	0.38511	0.00019169	497.7580823730719	52.819	0.20528	52.63	52.501	52.706	-0.18922					6	3	2	0	0	0	0.40176	1	20329	20329		49.933	0	1	12882000			7501	4596	4290	4323	7277	7277					0.004866415951596537
EDTSCECH	8	Unmodified	_EDTSCECH_					0	0	0			REV__nc|ENSG00000150093|P05556-2|ITGB1	REV__nc|ENSG00000150093|P05556-2|ITGB1	MSMS	HCT116MG_D190212_S2	2	462.1463317871094	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.092	1	52.902	52.402	53.402	-0.18922								0	0	0	0.8837	1	20409	20409		2.5775	0	1		+		7502	12579	4291	4324	7278	7278					-0.18456704084189823
EDTSCECH	8	Unmodified	_EDTSCECH_					0	0	0			REV__nc|ENSG00000150093|P05556-2|ITGB1	REV__nc|ENSG00000150093|P05556-2|ITGB1	MSMS	HCT116MG_D190212_S3	3	462.14666748046875	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.2	1	50.888	50.388	51.388	-0.31166								0	0	0	0.8837	1	19326	19326		2.5775	1.7838	1		+		7503	12579	4291	4324	7279	7279					-0.18456704084189823
EDVFFEKP	8	Unmodified	_EDVFFEKP_					0	0	0			REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	MSMS	HCT116MG_D190212_S3	3	505.7453308105469	2	505.745108	1009.47566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.694	1	57.42	56.92	57.92	-0.27434								0	0	0	0.8837	1	21931	21931		4.3292	0	1		+		7504	17330	4292	4325	7280	7280					-0.02869627576330913
EDVFKKPLPPT	11	Unmodified	_EDVFKKPLPPT_					0	0	0		ENST00000454079.5_1_3:50099373-50114563:+|nuORF;ENST00000434592.5_1_3:50097096-50127827:+|nuORF;ENST00000441115.5_1_3:50012785-50103056:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;ENSG00000004534|ENST00000266022|RBM6	ENST00000454079.5_1_3:50099373-50114563:+|nuORF	ENST00000454079.5_1_3:50099373-50114563:+|nuORF	MSMS	HCT116MG_D190212_S3	3	635.85400390625	2	635.855721	1269.69689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.884	1	40.583	40.083	41.083	-0.30174								0	0	0	0.94538	1	15192	15192		8.7454	2.5396	1				7505	801	4293	4326	7281	7281					0.07282812400126204
EDVFSHFLY	9	Unmodified	_EDVFSHFLY_					0	0	0		nc|ENSG00000124224|Q9P1A2-3|PPP4R1L;ENST00000493688.5_1_20:56821016-56847830:-|nuORF;nc|ENSG00000124224|Q9P1A2|PPP4R1L;ENST00000244070.7_1_20:56821016-56884481:-|nuORF	nc|ENSG00000124224|Q9P1A2-3|PPP4R1L	nc|ENSG00000124224|Q9P1A2-3|PPP4R1L	MSMS	HCT116MG_D190212_S3	3	578.7677001953125	2	578.769114	1155.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.203	1	47.887	47.387	48.387	-0.31596								0	0	0	0.76793	1	18123	18123		12.532	4.6214	1				7506	6785	4294	4327	7282	7282					-0.047865536562767375
EDVGGEAL	8	Unmodified	_EDVGGEAL_					0	0	0		ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENST00000388967.3_1_3:36809324-36810203:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	789.3634643554688	1	789.36249	788.355213	1.1754	0.0009278	0.47511	0.00037503	1.6505	0.0013028	789.3625553006465	33.597	0.41383	33.404	33.225	33.639	-0.19297					9	7	2	0	0	0	0.15838	1	12496	12496		81.864	0	1	37200000			7507	7590	4295	4328	7283	7283					-0.04743035569947551
EDVGGEAL	8	Unmodified	_EDVGGEAL_					0	0	0		ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENST00000388967.3_1_3:36809324-36810203:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	789.3618774414062	1	789.36249	788.355213	0.70976	0.00056026	0.13438	0.00010608	0.84414	0.00066634	789.3624422724879	33.775	0.46764	33.485	33.304	33.771	-0.29013					13	8	2	0	0	0	0.10511	1	12396	12396		93.883	0	1	18568000			7508	7590	4295	4328	7284	7284					-0.04743035569947551
EDVKVMLY	8	Unmodified	_EDVKVMLY_					0	0	0		HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant;nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1	HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant	HAP1|p.L341Rfs*3|1|0.55|ENSG00000173805|chr17:41731539-41731540|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	498.7591552734375	2	498.757161	995.499769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.773	1	34.387	33.887	34.887	-0.38606								0	0	0	0.82692	1	12710	12710		20.454	0	1				7509	5304	4296	4329	7285	7285					0.0018388958569630631
EDVLLVLGRL	10	Unmodified	_EDVLLVLGRL_					0	0	0		RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF;RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant;RLF|p.L337Wfs*10|1|0.4|ENSG00000117000|chr1:40231574-40231574|T/-|frameshift_variant	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	376.2327880859375	3	376.23253	1125.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.138	1	40.761	40.261	41.261	-0.37732								0	0	0	0.95351	1	15118	15118		1.9064	0	1				7510	2552	4297	4330	7286	7286					0.11794847091277916
EDVRFDELRKF	11	Unmodified	_EDVRFDELRKF_					0	0	0			REV__nc|ENSG00000138709|Q659C4-7|LARP1B	REV__nc|ENSG00000138709|Q659C4-7|LARP1B	MSMS	HCT116MG_D190212_S2	2	727.372802734375	2	727.37534	1452.73613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.178	1	32.967	32.467	33.467	-0.21135								0	0	0	0.95636	1	12302	12302		2.9952	0.26005	1		+		7511	16145	4298	4331	7287	7287					0.02786912683677656
EDVSIRKDP	9	Unmodified	_EDVSIRKDP_					0	0	0			REV__ENST00000397072.7_1_5:179665329-179706839:-|nuORF	REV__ENST00000397072.7_1_5:179665329-179706839:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	530.2797241210938	2	529.77747	1057.54039	0.36354	0.00019259	0.39224	0.0002078	0.75578	0.00040039	529.7773705322231	37.303	0.39474	36.919	36.685	37.079	-0.3839					12	7	2	0	0	0	0.26009	1	13666	13666		6.7232	1.9672	1	6331300	+		7512	10621	4299	4332	7288	7288					0.01391947229649304
EDVVARVP	8	Unmodified	_EDVVARVP_					0	0	0		PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant;PHF2|p.K492Dfs*21|1|0.2|ENSG00000197724|chr9:93660330-93660331|AA/-|frameshift_variant;PHF2|p.S954Efs*9|1|0.47|ENSG00000197724|chr9:93676611-93676612|-/A|frameshift_variant;ENSG00000197724|ENST00000359246|PHF2	PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant	PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	442.7446594238281	2	442.745442	883.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.516	1	40.138	39.638	40.638	-0.37828								0	0	0	0.77419	1	14867	14867		24.674	2.9272	1				7513	6168	4300	4333	7289	7289					0.029932118633723803
EDVVQVRL	8	Unmodified	_EDVVQVRL_					0	0	0			REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000172845|Q02447-4|SP3	MULTI-SECPEP	HCT116MG_D190212_S3	3	478.7579650878906	2	479.271824	956.529095	0.28887	0.00013845	-0.35583	-0.00017054	-0.066962	-3.2093E-05	479.2714864253703	42.517	0.20897	42.213	42.092	42.301	-0.30352					5	3	2	0	0	0	0.27349	1	15847	15847		30.225	6.2042	1	3148300	+		7514	13406	4301	4334	7290	7290					0.04909169926202139
EDWDLQNHHF	10	Unmodified	_EDWDLQNHHF_					0	0	0			REV__ENST00000519583.5_1_5:178030620-178044013:-|nuORF	REV__ENST00000519583.5_1_5:178030620-178044013:-|nuORF	MSMS	HCT116MG_D190212_S1	1	670.7890625	2	670.786358	1339.55816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.511	1	23.511	23.011	24.011	0								0	0	0	0.95507	1	8376	8376		3.5965	0.31518	1		+		7515	11477	4302	4335	7291	7291					-0.09803337515472776
EDWRQKLP	8	Unmodified	_EDWRQKLP_					0	0	0		NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8;NLRP8|p.G312V|1|0.23|ENSG00000179709|chr19:55954993-55954993|G/T|missense_variant	NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant	NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	536.1655883789062	2	536.282723	1070.55089	0.37806	0.00020275	-1.7584	-0.00094302	-1.3804	-0.00074027	536.282010755459	38.472	0.31183	38.17	38.04	38.352	-0.30137					7	5	2	0	0	0	0.33364	1	14232	14232		0.79363	0	1	2106000			7516	5566	4303	4336	7292	7292					0.01843974674761739
EDYDRDRY	8	Unmodified	_EDYDRDRY_					0	0	0			REV__nc|ENSG00000099139|Q92824|PCSK5	REV__nc|ENSG00000099139|Q92824|PCSK5	MSMS	HCT116MG_D190212_S3	3	566.2384033203125	2	566.238709	1130.46287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.288	1	31.027	30.527	31.527	-0.26071								0	0	0	0.8837	1	11425	11425		12.532	1.7076	1		+		7517	11040	4304	4337	7293	7293					-0.0971469070650528
EDYNEMVGY	9	Unmodified	_EDYNEMVGY_					0	0	0			REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	REV__tr|U7T8H9|U7T8H9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00060PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	560.21923828125	2	560.218597	1118.42264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.214	1	28.214	27.714	28.714	0								0	0	0	0.76877	1	10270	10270		5.2307	0	1		+		7518	18008	4305	4338	7294	7294					-0.13183373421293254
EEAASAPAV	9	Unmodified	_EEAASAPAV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S1	1	844.4056396484375	1	844.404689	843.397412	0.81063	0.0006845	0.46553	0.00039309	1.2762	0.0010776	844.4046260217001	26.542	0.20803	26.542	26.449	26.657	0					6	3	2	0	0	0	0.026974	1	9615	9615		89.427	18.711	1	4821600			7519	3346	4306	4339	7295	7295					-0.030550601615800588
EEAASAPAV	9	Unmodified	_EEAASAPAV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	844.4052124023438	1	844.404689	843.397412	0.68162	0.00057556	-0.23764	-0.00020066	0.44398	0.0003749	844.4044508857713	26.846	0.3681	26.493	26.345	26.713	-0.35254					13	6	3	0	0	0	0.0082751	1	9747	9747		117.6	28.172	1	53264000			7520	3346	4306	4339	7296	7296					-0.030550601615800588
EEAASAPAV	9	Unmodified	_EEAASAPAV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	844.4058227539062	1	844.404689	843.397412	0.7954	0.00067164	-0.032403	-2.7361E-05	0.763	0.00064428	844.4046090879779	26.794	0.5728	26.645	26.411	26.984	-0.14924					24	10	3	0	0	0	0.0082751	1	9611	9611		117.6	28.172	1	29281000			7521	3346	4306	4339	7297	7297					-0.030550601615800588
EEAASAPAV	9	Unmodified	_EEAASAPAV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MSMS	HCT116MG_D190212_S3	3	422.7056579589844	2	422.705983	843.397412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.835	1	26.686	26.186	27.186	-0.14924								0	0	0	0.030705	1	9645	9645		81.864	11.149	1				7522	3346	4306	4339	7298	7298					-0.030550601615800588
EEAASAPAV	9	Unmodified	_EEAASAPAV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S4	4	844.4058227539062	1	844.404689	843.397412	0.6912	0.00058365	0.17188	0.00014514	0.86308	0.00072879	844.4048589499306	26.924	0.41554	26.613	26.379	26.794	-0.3114					12	7	2	0	0	0	0.026974	1	9616	9616		89.427	7.5627	1	9759100			7523	3346	4306	4339	7299	7299					-0.030550601615800588
EEAASAPAV	9	Unmodified	_EEAASAPAV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MSMS	HCT116MG_D190212_S4	4	422.7059631347656	2	422.705983	843.397412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.955	1	26.644	26.144	27.144	-0.3114								0	0	0	0.58443	1	9627	9627		24.674	6.5389	1				7524	3346	4306	4339	7300	7300					-0.030550601615800588
EEAAVAIKA	9	Unmodified	_EEAAVAIKA_					0	0	0		ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	HCT116MG_D190212_S1	1	451.2532043457031	2	451.2531	900.491647	0.34827	0.00015716	0.036814	1.6613E-05	0.38509	0.00017377	451.25303722867756	28.772	0.31491	28.772	28.588	28.903	0					9	5	2	0	0	0	0.027442	1	10493	10493		88.954	34.18	1	18420000			7525	3190	4307	4340	7301	7301					0.037420786605480316
EEAAVAIKA	9	Unmodified	_EEAAVAIKA_					0	0	0		ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	HCT116MG_D190212_S2	2	451.25274658203125	2	451.2531	900.491647	0.19692	8.8862E-05	-0.13904	-6.2743E-05	0.057882	2.6119E-05	451.25297343869835	29.205	0.30628	28.888	28.761	29.067	-0.31613					8	5	2	0	0	0	0.012496	1	10695	10695		107.19	39.106	1	64211000			7526	3190	4307	4340	7302	7302					0.037420786605480316
EEAAVAIKA	9	Unmodified	_EEAAVAIKA_					0	0	0		ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	HCT116MG_D190212_S2	2	901.4994506835938	1	901.498923	900.491647	0.98321	0.00088636	0.011599	1.0456E-05	0.99481	0.00089682	901.4989858033513	29.205	0.25459	28.888	28.761	29.015	-0.31613					6	4	2	0	0	0	0.0080847	1	10716	10716		118.07	48.963	1	26840000			7527	3190	4307	4340	7303	7303					0.037420786605480316
EEAAVAIKA	9	Unmodified	_EEAAVAIKA_					0	0	0		ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	HCT116MG_D190212_S3	3	451.2532653808594	2	451.2531	900.491647	0.22784	0.00010281	-0.029869	-1.3478E-05	0.19797	8.9334E-05	451.2530437847407	29.19	0.5206	28.968	28.681	29.202	-0.22195					15	9	3	0	0	0	0.012496	1	10603	10603		107.19	39.106	1	14936000			7528	3190	4307	4340	7304	7304					0.037420786605480316
EEAAVAIKA	9	Unmodified	_EEAAVAIKA_					0	0	0		ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	HCT116MG_D190212_S4	4	451.25311279296875	2	451.2531	900.491647	0.29637	0.00013374	0.34132	0.00015402	0.6377	0.00028776	451.25318931755913	29.356	0.2597	29.007	28.877	29.137	-0.34921					6	4	2	0	0	0	0.055677	1	10606	10606		71.922	25.901	1	4243600			7529	3190	4307	4340	7305	7305					0.037420786605480316
EEAAVVQY	8	Unmodified	_EEAAVVQY_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	HCT116MG_D190212_S3	3	908.4371948242188	1	908.435989	907.428712	0.69177	0.00062843	0.55736	0.00050632	1.2491	0.0011348	908.4364624344363	34.264	0.26003	33.97	33.871	34.131	-0.29419					7	4	2	0	0	0	0.28659	1	12624	12624		60.39	13.469	1	4567700			7530	3430	4308	4341	7306	7306					-0.02870487127472643
EEADFYRVV	9	Unmodified	_EEADFYRVV_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant;CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	564.27197265625	2	564.272021	1126.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.32	1	44.236	43.736	44.736	-0.083263								0	0	0	0.76777	1	16828	16828		8.7454	0.83525	1				7531	430;433	4309	4342	7307	7307					-0.028714551446228143
EEADLELSLP	10	Unmodified	_EEADLELSLP_					0	0	0		nc|ENSG00000087460|O95467|GNAS	nc|ENSG00000087460|O95467|GNAS	nc|ENSG00000087460|O95467|GNAS	MSMS	HCT116MG_D190212_S4	4	558.2454223632812	2	558.276969	1114.53938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.24	1	38.86	38.36	39.36	-0.38055								0	0	0	0.90023	1	14411	14411		15.847	1.0089	1				7532	9393	4310	4343	7308	7308					-0.013303119299052923
EEADRLITY	9	Unmodified	_EEADRLITY_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MSMS	HCT116MG_D190212_S2	2	555.3013305664062	2	555.277303	1108.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.097	1	39.016	38.516	39.516	-0.081181								0	0	0	0.04525	1	14704	14704		71.708	33.734	1				7533	4365	4311	4344	7309	7309					-0.009874724901919762
EEADVWDPARE	11	Unmodified	_EEADVWDPARE_					0	0	0			REV__ENST00000576498.5_1_17:79651084-79658602:+|nuORF	REV__ENST00000576498.5_1_17:79651084-79658602:+|nuORF	MSMS	HCT116MG_D190212_S3	3	658.7938842773438	2	658.791306	1315.56806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.608	1	49.292	48.792	49.792	-0.31596								0	0	0	0.92235	1	18685	18685		17.113	4.0704	1		+		7534	13844	4312	4345	7310	7310					-0.07710194300784678
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	HCT116MG_D190212_S1	1	575.8085327148438	2	575.808771	1149.60299	0.61124	0.00035196	-0.24135	-0.00013897	0.36989	0.00021299	575.8086792062951	29.194	0.20907	29.194	29.06	29.269	0					9	3	3	0	0	0	0.0034966	1	10672	10672		199.75	141.07	1	14084000			7535	3835	4313	4346	7311	7311					0.034170932978668134
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	HCT116MG_D190212_S1	1	384.2079162597656	3	384.208273	1149.60299	0.063592	2.4432E-05	-0.85646	-0.00032906	-0.79287	-0.00030463	384.2078360470836	29.19	0.26134	29.19	29.007	29.269	0					6	4	2	0	0	0	0.27446	1	10684	10684		33.445	16.002	1	6979300			7536	3835	4313	4346	7312	7312					0.034170932978668134
EEAEIIRKY	9	Unmodified	_EEAEIIRKY_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111591276-111591579:+|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	HCT116MG_D190212_S2	2	575.809326171875	2	575.808771	1149.60299	0.71273	0.0004104	-0.51076	-0.0002941	0.20197	0.0001163	575.8086527481584	29.579	0.15501	29.278	29.185	29.34	-0.30095					4	2	2	0	0	0	0.0095327	1	10863	10863		137.42	78.745	1	13891000			7537	3835	4313	4346	7313	7313					0.034170932978668134
EEAEPYMHRA	10	Unmodified	_EEAEPYMHRA_					0	0	0		TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant	TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	616.7721557617188	2	616.771862	1231.52917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.425	1	23.04	22.54	23.54	-0.3852								0	0	0	0.22534	1	8348	8348		66.457	28.281	1				7538	4077	4314	4347	7314	7314					-0.07733198136111241
EEAEPYMHRA	10	Unmodified	_EEAEPYMHRA_					0	0	0		TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant	TAOK2|p.G983Vfs*50|1|0.43|ENSG00000149930|chr16:29987216-29987216|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	616.7722778320312	2	616.771862	1231.52917	0.30702	0.00018936	0.91069	0.00056169	1.2177	0.00075105	616.7721621838544	22.836	0.19627	22.817	22.699	22.896	-0.018869					7	3	3	0	0	0	0.31047	1	8049	8049		49.554	16.769	1	3132800			7539	4077	4314	4347	7315	7315					-0.07733198136111241
EEAERFFK	8	Unmodified	_EEAERFFK_					0	0	0			REV__ENSG00000116285|ENST00000377482|ERRFI1	REV__ENSG00000116285|ENST00000377482|ERRFI1	MSMS	HCT116MG_D190212_S3	3	528.2634887695312	2	528.261456	1054.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.606	1	27.418	26.918	27.918	-0.18847								0	0	0	0.79325	1	9956	9956		23.148	2.2772	1		+		7540	11582	4315	4348	7316	7316					-0.016714204534764576
EEAESLVQP	9	Unmodified	_EEAESLVQP_					0	0	0			REV__COBL|p.Q983Rfs*82|1|0.44|ENSG00000106078|chr7:51028148-51028148|T/-|frameshift_variant	REV__COBL|p.Q983Rfs*82|1|0.44|ENSG00000106078|chr7:51028148-51028148|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	501.2431335449219	2	501.242929	1000.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.329	1	19.388	18.888	19.888	0.05983								0	0	0	0.24841	1	6621	6621		43.858	0	1		+		7541	10220	4316	4349	7317	7317					-0.028911367899013385
EEAEVQHLQP	10	Unmodified	_EEAEVQHLQP_					0	0	0			REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	MSMS	HCT116MG_D190212_S4	4	590.2854614257812	2	590.28566	1178.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.202	1	36.818	36.318	37.318	-0.3839								0	0	0	0.87399	1	13643	13643		19.257	3.4098	1		+		7542	15411	4317	4350	7318	7318					-0.025369716042405344
EEAGFHTVEA	10	Unmodified	_EEAGFHTVEA_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51;nc|ENSG00000051180|Q06609-3|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	HCT116MG_D190212_S2	2	545.246337890625	2	545.246003	1088.47745	0.48933	0.0002668	0.28621	0.00015605	0.77553	0.00042286	545.2461390445369	31.061	0.20701	30.794	30.663	30.87	-0.26704					8	3	3	0	0	0	0.65652	1	11467	11467		24.021	8.1734	1	29692000			7543	1055	4318	4351	7319	7319					-0.06324618558369366
EEAGFHTVEA	10	Unmodified	_EEAGFHTVEA_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51;nc|ENSG00000051180|Q06609-3|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	HCT116MG_D190212_S3	3	545.2462768554688	2	545.246003	1088.47745	0.36514	0.00019909	0.33399	0.00018211	0.69913	0.0003812	545.2461018085545	31.204	0.26124	30.944	30.813	31.074	-0.26071					8	4	2	0	0	0	0.029196	1	11415	11415		103.75	59.89	1	9467200			7544	1055	4318	4351	7320	7320					-0.06324618558369366
EEAGFHTVEA	10	Unmodified	_EEAGFHTVEA_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51;nc|ENSG00000051180|Q06609-3|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MATCH	HCT116MG_D190212_S4	4		2	545.246003	1088.47745	0.4407	0.00024029	-1.1229	-0.00061226	-0.68221	-0.00037197	545.2451144601166	31.334	0.15582	30.963	30.868	31.023	-0.37026	0.063043	-0.0014879	NaN	103.75	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1770500			7545	1055	4318	4351							-0.06324618558369366
EEAGGRLPG	9	Unmodified	_EEAGGRLPG_					0	0	0		ENST00000378509.8_1_7:134001453-134001714:-|nuORF	ENST00000378509.8_1_7:134001453-134001714:-|nuORF	ENST00000378509.8_1_7:134001453-134001714:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	443.2247314453125	2	443.224874	884.435195	0.014325	6.3493E-06	0.11214	4.9702E-05	0.12646	5.6051E-05	443.2248255290739	18.188	0.46991	17.832	17.545	18.015	-0.35647					14	8	3	0	0	0	0.071351	1	6259	6259		64.236	3.8468	1	16887000			7546	7543	4319	4352	7321	7321					-0.011645491760873483
EEAGGRLPG	9	Unmodified	_EEAGGRLPG_					0	0	0		ENST00000378509.8_1_7:134001453-134001714:-|nuORF	ENST00000378509.8_1_7:134001453-134001714:-|nuORF	ENST00000378509.8_1_7:134001453-134001714:-|nuORF	MSMS	HCT116MG_D190212_S3	3	443.2250061035156	2	443.224874	884.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.228	1	17.312	16.812	17.812	0.084467								0	0	0	0.1044	1	5773	5773		54.774	7.8527	1				7547	7543	4319	4352	7322	7322					-0.011645491760873483
EEAGHATLPP	10	Unmodified	_EEAGHATLPP_					0	0	0		ENST00000479308.1_1_3:118955754-118959068:-|nuORF;ENST00000460395.5_1_3:118955754-118959206:-|nuORF;ENST00000493932.5_2_3:118955754-118959476:-|nuORF;ENST00000470111.5_2_3:118955754-118959724:-|nuORF;ENST00000393765.6_1_3:118955754-118959905:-|nuORF	ENST00000479308.1_1_3:118955754-118959068:-|nuORF	ENST00000479308.1_1_3:118955754-118959068:-|nuORF	MSMS	HCT116MG_D190212_S2	2	511.2869873046875	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.887	1	24.511	24.011	25.011	-0.37521								0	0	0	0.65378	1	8938	8938		39.957	15.283	1				7548	7628	4320	4353	7323	7323					-0.021800108331490264
EEAGWTELAE	10	Unmodified	_EEAGWTELAE_					0	0	0		HPS6|p.N559Mfs*54|2|0.39|ENSG00000166189|chr10:102067143-102067143|C/-|frameshift_variant;HPS6|p.L690Pfs*14|1|0.6|ENSG00000166189|chr10:102067537-102067538|-/C|frameshift_variant;HPS6|p.P730Lfs*25|1|0.3|ENSG00000166189|chr10:102067659-102067659|C/-|frameshift_variant;ENSG00000166189|ENST00000299238|HPS6	HPS6|p.N559Mfs*54|2|0.39|ENSG00000166189|chr10:102067143-102067143|C/-|frameshift_variant	HPS6|p.N559Mfs*54|2|0.39|ENSG00000166189|chr10:102067143-102067143|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	567.7506713867188	2	567.751118	1133.48768	0.44073	0.00025022	-1.3848	-0.00078622	-0.94406	-0.00053599	567.7504969438226	21.093	0.2161	21.093	20.956	21.173	0					8	3	3	0	0	0	0.82332	1	7429	7429		10.074	10.074	1	9132300			7549	4826	4321	4354	7324	7324					-0.07372055623841334
EEAHLNTSF	9	Unmodified	_EEAHLNTSF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MSMS	HCT116MG_D190212_S1	1	524.2403564453125	2	524.240721	1046.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.632	1	35.632	35.132	36.132	0								0	0	0	0.22299	1	13261	13261		45.7	22.551	1				7550	2438	4322	4355	7325	7325					-0.054486012128108996
EEAHLNTSF	9	Unmodified	_EEAHLNTSF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	524.2406005859375	2	524.240721	1046.46689	0.42512	0.00022287	-0.1111	-5.8241E-05	0.31403	0.00016463	524.2406354210569	35.606	0.35972	35.463	35.335	35.695	-0.14245					12	6	2	0	0	0	0.041798	1	13290	13290		78.728	46.423	1	68120000			7551	2438	4322	4355	7326	7326					-0.054486012128108996
EEAHLNTSF	9	Unmodified	_EEAHLNTSF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	524.240966796875	2	524.240721	1046.46689	0.48239	0.00025289	0.33725	0.0001768	0.81964	0.00042969	524.2408017068632	35.806	0.3415	35.505	35.388	35.729	-0.30042					15	7	3	0	0	0	0.061422	1	13213	13213		69.105	38.468	1	16720000			7552	2438	4322	4355	7327	7327					-0.054486012128108996
EEAHLNTSF	9	Unmodified	_EEAHLNTSF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	524.24072265625	2	524.240721	1046.46689	0.63166	0.00033114	-0.23536	-0.00012339	0.3963	0.00020775	524.2406829206586	35.893	0.18935	35.507	35.433	35.622	-0.38605					6	4	2	0	0	0	0.035349	2	13117	13117;13148		81.89	55.007	1	4169500			7553	2438	4322	4355	7328;7329	7328					-0.054486012128108996
EEAHLNTSF	9	Unmodified	_EEAHLNTSF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	524.240721	1046.46689	0.49016	0.00025696	-0.59162	-0.00031015	-0.10146	-5.319E-05	524.2404637627925	35.552	0.20587	35.552	35.424	35.63	0	0.044997	-0.00051386	NaN	81.89	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9323600			7554	2438	4322	4355							-0.054486012128108996
EEAHLRELY	9	Unmodified	_EEAHLRELY_					0	0	0		ENST00000557589.1_1_12:56815505-56817595:-|nuORF;nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	ENST00000557589.1_1_12:56815505-56817595:-|nuORF	ENST00000557589.1_1_12:56815505-56817595:-|nuORF	MSMS	HCT116MG_D190212_S3	3	580.4806518554688	2	580.290745	1158.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.023	1	35.723	35.223	36.223	-0.30042								0	0	0	0.768	1	13296	13296		7.9102	1.187	1				7555	2298	4323	4356	7330	7330					-0.0060036387899344845
EEAIIYSY	8	Unmodified	_EEAIIYSY_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	HCT116MG_D190212_S1	1	987.46630859375	1	987.466955	986.459678	0.62129	0.0006135	0.16272	0.00016068	0.78401	0.00077418	987.4666520236769	45.558	0.26133	45.558	45.399	45.66	0					6	4	2	0	0	0	0.21487	2	17277	17244;17277		70.716	30.267	1	11681000			7556	1537	4324	4357	7331;7332	7332					-0.03409333813237936
EEAIIYSY	8	Unmodified	_EEAIIYSY_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	HCT116MG_D190212_S3	3	987.4677734375	1	987.466955	986.459678	0.90497	0.00089363	-0.42153	-0.00041625	0.48344	0.00047738	987.4663212524478	45.866	0.35921	45.555	45.357	45.716	-0.31094					14	6	3	0	0	0	0.057785	1	17185	17185		114.94	40.547	1	20012000			7557	1537	4324	4357	7333	7333					-0.03409333813237936
EEAIIYSY	8	Unmodified	_EEAIIYSY_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;SPTLC1|p.E218Afs*44|1|0.36|ENSG00000090054|chr9:92059215-92059216|CT/-|frameshift_variant	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	HCT116MG_D190212_S4	4	987.4671020507812	1	987.466955	986.459678	0.66537	0.00065703	-0.057176	-5.6459E-05	0.60819	0.00060057	987.4668553299845	45.899	0.29593	45.527	45.347	45.642	-0.37206					9	5	2	0	0	0	0.15838	1	16953	16953		81.864	25.323	1	9687600			7558	1537	4324	4357	7334	7334					-0.03409333813237936
EEAIKSVCAP	10	Unmodified	_EEAIKSVCAP_					0	0	0		nc|ENSG00000101624|Q8TAP6-2|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF;ENSG00000101624|ENST00000262127|CEP76	nc|ENSG00000101624|Q8TAP6-2|CEP76	nc|ENSG00000101624|Q8TAP6-2|CEP76	MULTI-MSMS	HCT116MG_D190212_S4	4	523.7603149414062	2	523.762975	1045.5114	0.38802	0.00020323	-3.269	-0.0017122	-2.881	-0.001509	523.761345602244	41.251	0.17419	40.873	40.756	40.93	-0.37732					5	3	2	0	0	0	0.28726	1	15172	15172		51.63	5.9302	1	5434000			7559	1801	4325	4358	7335	7335					-0.0095391339100388
EEAKIFITV	9	Unmodified	_EEAKIFITV_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	MULTI-MSMS	HCT116MG_D190212_S1	1	525.2978515625	2	525.297507	1048.58046	0.23337	0.00012259	0.21213	0.00011143	0.4455	0.00023402	525.2977910769167	49.931	0.20624	49.931	49.802	50.008	0					6	3	2	0	0	0	0.0082095	1	19044	19044		117.76	56.403	1	27606000			7560	1429	4326	4359	7336	7336					0.05811493900205278
EEAKIFITV	9	Unmodified	_EEAKIFITV_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2985229492188	2	525.297507	1048.58046	0.19416	0.00010199	0.84036	0.00044144	1.0345	0.00054343	525.2979779990224	50.085	0.40917	49.921	49.737	50.147	-0.16369					14	7	3	0	0	0	0.0051419	1	19190	19190		136.39	58.243	1	100720000			7561	1429	4326	4359	7337	7337					0.05811493900205278
EEAKKEGGTV	10	Unmodified	_EEAKKEGGTV_					0	0	0		ALDH7A1|p.E507Gfs*5|1|0.1|ENSG00000164904|chr5:126546371-126546372|-/T|frameshift_variant;nc|ENSG00000164904|P49419-2|ALDH7A1;ENSG00000164904|ENST00000409134|ALDH7A1	ALDH7A1|p.E507Gfs*5|1|0.1|ENSG00000164904|chr5:126546371-126546372|-/T|frameshift_variant	ALDH7A1|p.E507Gfs*5|1|0.1|ENSG00000164904|chr5:126546371-126546372|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	523.7411499023438	2	524.269478	1046.5244	0.35382	0.0001855	-0.035763	-1.8749E-05	0.31806	0.00016675	524.2693911873298	16.03	0.26053	16.03	15.9	16.161	0					7	4	2	0	0	0	0.72406	1	5393	5393		18.373	2.224	1	12236000			7562	95	4327	4360	7338	7338					0.0030024099276033667
EEAKKFLAP	9	Unmodified	_EEAKKFLAP_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MSMS	HCT116MG_D190212_S1	1	516.7899780273438	2	516.78985	1031.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.082	1	30.082	29.582	30.582	0								0	0	0	0.0019432	1	11019	11019		125.53	77.78	1				7563	1378	4328	4361	7339	7339					0.050626271030296266
EEAKKFLAP	9	Unmodified	_EEAKKFLAP_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7899780273438	2	516.78985	1031.56515	0.053793	2.78E-05	0.22334	0.00011542	0.27713	0.00014322	516.7899087275181	30.645	0.77427	30.378	30.199	30.974	-0.26704					43	14	5	0	0	0	0.0063854	1	11256	11256		125.53	77.78	1	1792999999.9999998			7564	1378	4328	4361	7340	7340					0.050626271030296266
EEAKKFLAP	9	Unmodified	_EEAKKFLAP_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	HCT116MG_D190212_S2	2	1032.572509765625	1	1032.57242	1031.56515	0.25587	0.00026421	0.51424	0.00053099	0.77011	0.0007952	1032.572757068758	30.645	0.25751	30.378	30.251	30.508	-0.26704					10	4	3	0	0	0	0.01405	1	11280	11280		103.35	43.28	1	55579000			7565	1378	4328	4361	7341	7341					0.050626271030296266
EEAKKFLAP	9	Unmodified	_EEAKKFLAP_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	HCT116MG_D190212_S3	3	516.7900390625	2	516.78985	1031.56515	0.1755	9.0697E-05	0.13428	6.9395E-05	0.30978	0.00016009	516.789847940405	30.683	0.65471	30.422	30.263	30.917	-0.26071					40	14	4	0	0	0	0.0063854	2	11136	11136;11146		125.53	73.899	1	620980000			7566	1378	4328	4361	7342;7343	7342					0.050626271030296266
EEAKKFLAP	9	Unmodified	_EEAKKFLAP_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	HCT116MG_D190212_S4	4	517.2921142578125	2	516.78985	1031.56515	0.2171	0.0001122	0.19406	0.00010029	0.41116	0.00021248	516.7898609435711	30.901	0.56709	30.537	30.307	30.874	-0.36416					34	11	5	0	0	0	0.0063854	2	11155	11155;11294		125.53	77.78	1	196570000			7567	1378	4328	4361	7344;7345	7344					0.050626271030296266
EEAKKGLAA	9	Unmodified	_EEAKKGLAA_					0	0	0		GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant;ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;nc|ENSG00000159131|P22102-2|GART	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	458.7585144042969	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.52	1	17.171	16.671	17.671	-0.34933								0	0	0	0.054343	1	5967	5967		69.105	20.759	1				7568	4398	4329	4362	7346	7346					0.04141481034844219
EEAKKWKEA	9	Unmodified	_EEAKKWKEA_					0	0	0		ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	MULTI-MSMS	HCT116MG_D190212_S2	2	559.7958374023438	2	559.795663	1117.57677	0.40169	0.00022486	0.072667	4.0678E-05	0.47436	0.00026554	559.7956691270987	17.353	0.20919	17.004	16.873	17.082	-0.34933					6	3	2	0	0	0	0.0095327	1	5927	5927		114.5	57.248	1	13959000			7569	4298	4330	4363	7347	7347					0.022688241263722375
EEAKRAIEA	9	Unmodified	_EEAKRAIEA_					0	0	0		ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7779235839844	2	508.772188	1015.52982	0.21294	0.00010834	-0.24499	-0.00012464	-0.032052	-1.6307E-05	508.7720436093688	18.971	0.36508	18.601	18.471	18.836	-0.3695					12	6	2	0	0	0	0.094138	1	6516	6516		59.368	22.862	1	13508000			7570	3446	4331	4364	7348	7348					0.02267964575219139
EEAKRWMEA	9	Unmodified	_EEAKRWMEA_					0	0	0		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	575.2716064453125	2	575.271498	1148.52844	0.54857	0.00031558	0.039876	2.294E-05	0.58845	0.00033852	575.2714697345477	29.446	0.26027	29.446	29.321	29.581	0					10	4	3	0	0	0	0.037377	1	10786	10786		96.936	62.534	1	17566000			7571	5746;3678	4332	4365	7349	7349					-0.039879927851643515
EEAKRWMEA	9	Unmodified	_EEAKRWMEA_					0	0	0		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	575.2714233398438	2	575.271498	1148.52844	0.28643	0.00016478	0.069259	3.9843E-05	0.35569	0.00020462	575.271517321088	29.875	0.568	29.574	29.237	29.805	-0.30095					22	10	4	0	0	0	0.0064252	1	10961	10961		136.39	76.318	1	151330000			7572	5746;3678	4332	4365	7350	7350					-0.039879927851643515
EEAKRWMEA	9	Unmodified	_EEAKRWMEA_					0	0	0		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	383.8502197265625	3	383.850091	1148.52844	-0.14977	-5.7488E-05	0.16037	6.1557E-05	0.010601	4.0692E-06	383.8502406858362	29.874	0.30963	29.573	29.444	29.753	-0.30095					8	5	2	0	0	0	0.43552	1	10987	10987		20.581	6.1756	1	33119000			7573	5746;3678	4332	4365	7351	7351					-0.039879927851643515
EEAKRWMEA	9	Unmodified	_EEAKRWMEA_					0	0	0		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	575.2715454101562	2	575.271498	1148.52844	0.60438	0.00034768	-0.28207	-0.00016226	0.32231	0.00018542	575.2713654142138	29.982	0.97215	29.745	29.187	30.159	-0.23655					42	19	4	0	0	0	0.0067974	1	10911	10911		143.91	77.452	1	58406000			7574	5746;3678	4332	4365	7352	7352					-0.039879927851643515
EEAKRWMEA	9	Unmodified	_EEAKRWMEA_					0	0	0		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		3	383.850091	1148.52844	0.011527	4.4248E-06	0.31972	0.00012272	0.33125	0.00012715	383.8502773077484	29.451	0.15628	29.451	29.373	29.529	0	-0.19382	0.00035874	NaN	20.581	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5135000			7575	5746;3678	4332	4365							-0.039879927851643515
EEAKRWMEA	9	Unmodified	_EEAKRWMEA_					0	0	0		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	383.850091	1148.52844	0.097891	3.7576E-05	-0.36223	-0.00013904	-0.26434	-0.00010147	383.85011690135997	29.978	0.37373	29.742	29.5	29.874	-0.23655	0.097104	-0.00042657	NaN	20.581	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7514500			7576	5746;3678	4332	4365							-0.039879927851643515
EEAKRWMEA	9	Unmodified	_EEAKRWMEA_					0	0	0		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	383.850091	1148.52844	0.011994	4.6037E-06	-0.29736	-0.00011414	-0.28536	-0.00010954	383.8500866347076	30.17	0.20802	29.813	29.701	29.909	-0.3571	0.1681	-0.00035186	NaN	20.581	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3044400			7577	5746;3678	4332	4365							-0.039879927851643515
EEAKRWMEA	9	Oxidation (M)	_EEAKRWM(Oxidation (M))EA_		EEAKRWM(1)EA		EEAKRWM(93)EA	0	0	1		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	583.2692260742188	2	583.268955	1164.52336	0.60816	0.00035472	0.26537	0.00015478	0.87353	0.0005095	583.2692764226274	22.203	0.31166	21.818	21.687	21.999	-0.3852					12	5	3	0	0	0	0.02327	1	7868	7868		93.166	62.529	1	11019000			7578	5746;3678	4332	4366	7353	7353		83			-0.0523229664779592
EEAKRWMEA	9	Oxidation (M)	_EEAKRWM(Oxidation (M))EA_		EEAKRWM(1)EA		EEAKRWM(40)EA	0	0	1		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.V76Kfs*24|1|0.08|ENSG00000140575|chr15:90426179-90426180|-/AAGGTCA|frameshift_variant;IQGAP1|p.N941Ifs*8|1|0.43|ENSG00000140575|chr15:90476693-90476693|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	583.2684936523438	2	583.268955	1164.52336	0.3949	0.00023033	-0.65192	-0.00038025	-0.25702	-0.00014991	583.2685520324081	21.588	0.31763	21.607	21.377	21.694	0.018448					11	5	3	0	0	0	0.20983	1	7519	7519		40.239	9.6027	1	4001000			7579	5746;3678	4332	4366	7354	7354		83			-0.0523229664779592
EEAKTVSA	8	Unmodified	_EEAKTVSA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	417.71392822265625	2	417.713808	833.413062	0.012803	5.348E-06	0.059815	2.4985E-05	0.072618	3.0333E-05	417.71376999208536	17.144	0.36515	16.795	16.665	17.03	-0.34933					10	6	2	0	0	0	0.37603	1	5832	5832		52.268	12.311	1	11619000			7580	927	4333	4367	7355	7355					-0.010307736445156479
EEALHQLHA	9	Unmodified	_EEALHQLHA_					0	0	0		nc|ENSG00000256950|O00233-2|PSMD9;ENSG00000110801|ENST00000541212|PSMD9;ENST00000544724.5_1_12:122337523-122354214:+|nuORF	nc|ENSG00000256950|O00233-2|PSMD9	nc|ENSG00000256950|O00233-2|PSMD9	MSMS	HCT116MG_D190212_S2	2	524.264404296875	2	524.26453	1046.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.078	1	26.726	26.226	27.226	-0.35254								0	0	0	0.038113	1	9821	9821		74.929	32.834	1				7581	2263	4334	4368	7356	7356					-0.006889022219411345
EEALPVTTA	9	Unmodified	_EEALPVTTA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	HCT116MG_D190212_S2	2	930.4788208007812	1	930.477854	929.470577	1.1469	0.0010671	-0.068537	-6.3773E-05	1.0783	0.0010034	930.4776060508453	35.76	0.56689	35.618	35.437	36.004	-0.14245					26	10	4	0	0	0	0.0036294	1	13337	13337		156.16	91.92	1	368210000			7582	5786	4335	4369	7357	7357					0.003020685610522378
EEALPVTTA	9	Unmodified	_EEALPVTTA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	HCT116MG_D190212_S2	2	465.742919921875	2	465.742565	929.470577	0.44388	0.00020673	-0.14304	-6.6619E-05	0.30084	0.00014011	465.74240946031097	35.771	0.25681	35.629	35.489	35.746	-0.14245					10	4	3	0	0	0	0.035914	1	13359	13359		81.613	39.519	1	34586000			7583	5786	4335	4369	7358	7358					0.003020685610522378
EEALPVTTA	9	Unmodified	_EEALPVTTA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	HCT116MG_D190212_S3	3	930.479248046875	1	930.477854	929.470577	0.88084	0.0008196	0.0072643	6.7593E-06	0.8881	0.00082636	930.4777391604636	35.9	0.54976	35.6	35.388	35.938	-0.30042					31	11	4	0	0	0	0.0036294	1	13211	13211		156.16	91.92	1	189500000			7584	5786	4335	4369	7359	7359					0.003020685610522378
EEALPVTTA	9	Unmodified	_EEALPVTTA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	HCT116MG_D190212_S3	3	465.7429504394531	2	465.742565	929.470577	0.30485	0.00014198	0.56126	0.0002614	0.86611	0.00040339	465.74259490015385	35.9	0.2804	35.6	35.449	35.729	-0.30042					10	5	2	0	0	0	0.0063744	1	13253	13253		125.62	74.77	1	12233000			7585	5786	4335	4369	7360	7360					0.003020685610522378
EEALPVTTA	9	Unmodified	_EEALPVTTA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	HCT116MG_D190212_S4	4	930.4784545898438	1	930.477854	929.470577	0.95743	0.00089087	-0.12389	-0.00011527	0.83354	0.00077559	930.4776034942037	35.983	0.4059	35.598	35.46	35.866	-0.38558					22	8	4	0	0	0	0.0036294	1	13135	13135		156.16	81.733	1	52258000			7586	5786	4335	4369	7361	7361					0.003020685610522378
EEALPVTTA	9	Unmodified	_EEALPVTTA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	HCT116MG_D190212_S4	4	465.7427978515625	2	465.742565	929.470577	0.19735	9.1913E-05	0.42774	0.00019922	0.62509	0.00029113	465.7427535233247	35.983	0.14709	35.598	35.526	35.673	-0.38558					4	2	2	0	0	0	0.16144	1	13173	13173		46.021	22.873	1	4030600			7587	5786	4335	4369	7362	7362					0.003020685610522378
EEALVAPAP	9	Unmodified	_EEALVAPAP_					0	0	0			REV__ENSG00000160194|ENST00000354250|NDUFV3	REV__ENSG00000160194|ENST00000354250|NDUFV3	MULTI-SECPEP	HCT116MG_D190212_S1	1	896.4736938476562	1	896.472374	895.465098	0.69555	0.00062355	0.00087057	7.8044E-07	0.69643	0.00062433	896.4728398257733	33.946	0.26116	33.946	33.815	34.076	0					5	4	2	0	0	0	0.19805	1	12620	12620		24.674	0	1	3393700	+		7588	12821	4336	4370	7363	7363					0.013183897692215396
EEAMAGAYDAP	11	Unmodified	_EEAMAGAYDAP_					0	0	0		ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A	ENSG00000141837|ENST00000360228|CACNA1A	ENSG00000141837|ENST00000360228|CACNA1A	MULTI-SECPEP	HCT116MG_D190212_S2	2	562.2727661132812	2	562.731871	1123.44919	0.42905	0.00024144	-0.32958	-0.00018547	0.099462	5.5971E-05	562.7316256488855	28.364	0.36261	28.034	27.822	28.184	-0.32987					10	6	2	0	0	0	0.33325	1	10340	10340		18.146	5.9057	1	10950000			7589	3735	4337	4371	7364	7364					-0.107596845299895
EEAMAGAYDAP	11	Unmodified	_EEAMAGAYDAP_					0	0	0		ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A	ENSG00000141837|ENST00000360228|CACNA1A	ENSG00000141837|ENST00000360228|CACNA1A	MULTI-MSMS	HCT116MG_D190212_S3	3	562.7321166992188	2	562.731871	1123.44919	0.43055	0.00024228	-0.32316	-0.00018185	0.10739	6.043E-05	562.7316431887097	28.369	0.83386	28.163	27.968	28.802	-0.20593					18	15	2	0	0	0	0.65731	1	10270	10270		29.082	9.7196	1	7595000			7590	3735	4337	4371	7365	7365					-0.107596845299895
EEAMAGAYDAP	11	Unmodified	_EEAMAGAYDAP_					0	0	0		ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A	ENSG00000141837|ENST00000360228|CACNA1A	ENSG00000141837|ENST00000360228|CACNA1A	MULTI-MSMS	HCT116MG_D190212_S4	4	562.7318115234375	2	562.731871	1123.44919	0.21859	0.00012301	-0.17729	-9.9768E-05	0.041301	2.3241E-05	562.7316029422185	28.526	0.25962	28.194	28.064	28.324	-0.33138					7	4	2	0	0	0	0.70991	1	10270	10270		18.146	2.2992	1	4022900			7591	3735	4337	4371	7366	7366					-0.107596845299895
EEANKAFSA	9	Unmodified	_EEANKAFSA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S1	1	483.7298889160156	2	483.729989	965.445425	0.2616	0.00012654	-0.10557	-5.1066E-05	0.15603	7.5477E-05	483.72987172992293	24.804	0.20932	24.804	24.673	24.882	0					8	3	3	0	0	0	0.014023	1	8901	8901		103.42	42.062	1	13736000			7592	6063	4338	4372	7367	7367					-0.038679862415278876
EEANKAFSA	9	Unmodified	_EEANKAFSA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S2	2	483.7301330566406	2	483.729989	965.445425	0.24389	0.00011798	0.60416	0.00029225	0.84805	0.00041023	483.729881820487	25.278	0.52135	24.903	24.66	25.181	-0.37521					27	9	5	0	0	0	0.0063854	1	9094	9094		125.53	54.396	1	110850000			7593	6063	4338	4372	7368	7368					-0.038679862415278876
EEANKAFSA	9	Unmodified	_EEANKAFSA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S2	2	966.452392578125	1	966.452701	965.445425	0.70417	0.00068055	-0.54623	-0.00052791	0.15794	0.00015264	966.4520460736387	25.269	0.20791	24.894	24.764	24.972	-0.37521					6	3	2	0	0	0	0.0035894	1	9101	9101		176.43	80.316	1	21148000			7594	6063	4338	4372	7369	7369					-0.038679862415278876
EEANKAFSA	9	Unmodified	_EEANKAFSA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S3	3	483.7301025390625	2	483.729989	965.445425	0.26284	0.00012714	0.59135	0.00028605	0.85419	0.0004132	483.7299315491063	24.877	0.62502	24.794	24.549	25.174	-0.083694					38	11	5	0	0	0	0.0063854	1	8832	8832		125.53	54.396	1	61321000			7595	6063	4338	4372	7370	7370					-0.038679862415278876
EEANKAFSA	9	Unmodified	_EEANKAFSA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S4	4	483.7300109863281	2	483.729989	965.445425	0.2633	0.00012737	0.17211	8.3255E-05	0.43541	0.00021062	483.72988641250487	25.092	0.62377	24.813	24.434	25.058	-0.27958					25	11	4	0	0	0	0.011082	1	8884	8884		110.67	53.203	1	23299000			7596	6063	4338	4372	7371	7371					-0.038679862415278876
EEAPAPMGA	9	Unmodified	_EEAPAPMGA_					0	0	0		ENST00000394467.3_1_X:124461034-124461598:-|nuORF;FBLIM1|p.P142Rfs*59|1|0.38|ENSG00000162458|chr1:15767546-15767546|C/-|frameshift_variant;FBLIM1|p.N331Kfs*6|1|0.42|ENSG00000162458|chr1:15777267-15777268|-/A|frameshift_variant;ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENST00000394467.3_1_X:124461034-124461598:-|nuORF	ENST00000394467.3_1_X:124461034-124461598:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	872.3828735351562	1	872.381845	871.374568	1.0501	0.00091608	-0.13664	-0.0001192	0.91345	0.00079688	872.3818072174597	28.68	0.31228	28.474	28.333	28.645	-0.20593					7	5	2	0	0	0	0.0093514	1	10432	10432		114.94	61.368	1	4161300			7597	4524	4339	4373	7372	7372					-0.0662640255069391
EEAPAQAKP	9	Unmodified	_EEAPAQAKP_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MULTI-MSMS	HCT116MG_D190212_S2	2	470.7400817871094	2	470.740357	939.46616	0.10282	4.84E-05	0.056343	2.6523E-05	0.15916	7.4923E-05	470.7402536784212	18.145	0.73133	17.789	17.493	18.224	-0.35647					25	13	3	0	0	0	0.097615	1	6180	6180		58.679	20.705	1	13792000			7598	1245	4340	4374	7373	7373					-0.0059939586186601446
EEAPAQAKP	9	Unmodified	_EEAPAQAKP_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S3	3	470.74041748046875	2	470.740357	939.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.145	1	17.23	16.73	17.73	0.084467								0	0	0	0.27628	1	5740	5740		41.84	11.203	1				7599	1245	4340	4374	7374	7374					-0.0059939586186601446
EEAPAQAKP	9	Unmodified	_EEAPAQAKP_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;TCOF1|p.Q435Rfs*58|1|0.11|ENSG00000070814|chr5:150374973-150374973|C/-|frameshift_variant	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MULTI-MSMS	HCT116MG_D190212_S4	4	470.7398376464844	2	470.740357	939.46616	-0.12335	-5.8065E-05	0.21305	0.00010029	0.089701	4.2226E-05	470.74029418399465	17.585	0.51925	17.415	17.069	17.588	-0.17047					17	9	3	0	0	0	0.24895	1	5814	5814		36.127	9.2434	1	2279400			7600	1245	4340	4374	7375	7375					-0.0059939586186601446
EEAPKFLAF	9	Unmodified	_EEAPKFLAF_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	HCT116MG_D190212_S2	2	526.2767333984375	2	526.276575	1050.5386	0.42435	0.00022332	0.12455	6.5547E-05	0.5489	0.00028887	526.2764668730772	54.467	0.25445	54.278	54.15	54.405	-0.1894					10	4	3	0	0	0	0.012496	1	20979	20979		107.19	52.413	1	113330000			7601	843	4341	4375	7376	7376					0.015349382117165078
EEAPKFLAF	9	Unmodified	_EEAPKFLAF_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-MSMS	HCT116MG_D190212_S3	3	526.276611328125	2	526.276575	1050.5386	0.35757	0.00018818	0.056745	2.9864E-05	0.41432	0.00021804	526.2764951426055	54.614	0.26148	54.318	54.138	54.4	-0.29587					8	4	3	0	0	0	0.035349	1	20708	20708		81.89	45.846	1	6582500			7602	843	4341	4375	7377	7377					0.015349382117165078
EEAPPGLSP	9	Unmodified	_EEAPPGLSP_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7;ABCA7|p.L827Sfs*28|1|0.29|ENSG00000064687|chr19:1049359-1049359|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	896.4364624023438	1	896.435989	895.428712	1.1004	0.00098646	-0.43392	-0.00038898	0.6665	0.00059747	896.4352890148527	34.169	0.77758	33.993	33.604	34.382	-0.17512					24	14	2	0	0	0	0.016134	1	12658	12658		100.37	39.982	1	24684000			7603	5	4342	4376	7378	7378					-0.023184871274793295
EEAPPGLSP	9	Unmodified	_EEAPPGLSP_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7;ABCA7|p.L827Sfs*28|1|0.29|ENSG00000064687|chr19:1049359-1049359|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	448.7218017578125	2	448.721633	895.428712	0.058126	2.6083E-05	-0.62043	-0.0002784	-0.56231	-0.00025232	448.7212422813736	34.38	1.1434	34.086	33.404	34.547	-0.2942					48	21	3	0	0	0	0.1037	2	12485	12485;12728		57.471	11.45	1	11330000			7604	5	4342	4376	7379;7380	7379					-0.023184871274793295
EEAPPGLSP	9	Unmodified	_EEAPPGLSP_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7;ABCA7|p.L827Sfs*28|1|0.29|ENSG00000064687|chr19:1049359-1049359|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	448.72161865234375	2	448.721633	895.428712	0.26608	0.00011939	-0.95752	-0.00042966	-0.69145	-0.00031027	448.72108548936677	34.53	1.1303	34.145	33.464	34.595	-0.38558					33	21	2	0	0	0	0.33687	1	12448	12448		26.884	6.43	1	5238700			7605	5	4342	4376	7381	7381					-0.023184871274793295
EEAPPGLSP	9	Unmodified	_EEAPPGLSP_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7;ABCA7|p.L827Sfs*28|1|0.29|ENSG00000064687|chr19:1049359-1049359|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	896.4367065429688	1	896.435989	895.428712	0.66513	0.00059625	-0.35545	-0.00031864	0.30968	0.00027761	896.4354661253949	34.395	0.77151	34.009	33.568	34.34	-0.38558					27	14	2	0	0	0	0.016134	2	12463	12463;12592		100.37	41.693	1	7124600			7606	5	4342	4376	7382;7383	7382					-0.023184871274793295
EEAPPGLSP	9	Unmodified	_EEAPPGLSP_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7;ABCA7|p.L827Sfs*28|1|0.29|ENSG00000064687|chr19:1049359-1049359|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	896.435989	895.428712	0.98378	0.0008819	-0.60256	-0.00054016	0.38122	0.00034174	896.4353387998834	34.239	1.1438	33.945	33.455	34.599	-0.2942	-0.037951	-5.1681E-05	NaN	100.37	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14812000			7607	5	4342	4376							-0.023184871274793295
EEAPPTKKP	9	Unmodified	_EEAPPTKKP_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MSMS	HCT116MG_D190212_S2	2	498.77166748046875	2	498.771657	995.528761	0.28328	0.00014129	0.2172	0.00010833	0.50048	0.00024963	498.7715579448522	15.813	0.67789	15.478	15.116	15.794	-0.33451					19	12	2	0	0	0	0.12205	1	5263	5263		53.833	17.706	1	4268500			7608	3969	4343	4377	7384	7384					0.030817502063200664
EEAPPTKKP	9	Unmodified	_EEAPPTKKP_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MSMS	HCT116MG_D190212_S3	3	498.7713928222656	2	498.771657	995.528761	0.46675	0.0002328	-0.36835	-0.00018372	0.098398	4.9078E-05	498.77144120178593	14.617	0.62385	14.696	14.463	15.087	0.079683					13	11	2	0	0	0	0.032914	1	4712	4712		83.429	43.479	1	1874800			7609	3969	4343	4377	7385	7385					0.030817502063200664
EEAPPTKKP	9	Unmodified	_EEAPPTKKP_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MSMS	HCT116MG_D190212_S4	4	498.7717590332031	2	498.771657	995.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.696	1	14.535	14.035	15.035	-0.16089								0	0	0	0.1107	1	4677	4677		53.833	17.706	1				7610	3969	4343	4377	7386	7386					0.030817502063200664
EEAQHFIKA	9	Unmodified	_EEAQHFIKA_					0	0	0		ENSG00000167302|ENST00000637944|TEPSIN;nc|ENSG00000167302|Q96N21-2|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	MULTI-MSMS	HCT116MG_D190212_S2	2	536.7740478515625	2	536.774731	1071.53491	0.75661	0.00040613	-0.4172	-0.00022394	0.33941	0.00018219	536.7744347077215	27.354	0.36176	27.002	26.819	27.18	-0.35226					17	6	4	0	0	0	0.0096523	1	9943	9943		114.2	58.025	1	120560000			7611	4913	4344	4378	7387	7387					0.0020026843783398363
EEAQHFIKA	9	Unmodified	_EEAQHFIKA_					0	0	0		ENSG00000167302|ENST00000637944|TEPSIN;nc|ENSG00000167302|Q96N21-2|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	MULTI-MSMS	HCT116MG_D190212_S2	2	358.185546875	3	358.185579	1071.53491	0.12291	4.4025E-05	-0.15477	-5.5435E-05	-0.031855	-1.141E-05	358.18541686311664	27.377	0.30948	27.029	26.875	27.185	-0.34772					16	5	4	0	0	0	0.2853	1	9955	9955		23.79	12.272	1	31483000			7612	4913	4344	4378	7388	7388					0.0020026843783398363
EEAQHFIKA	9	Unmodified	_EEAQHFIKA_					0	0	0		ENSG00000167302|ENST00000637944|TEPSIN;nc|ENSG00000167302|Q96N21-2|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	MULTI-MSMS	HCT116MG_D190212_S3	3	536.7750244140625	2	536.774731	1071.53491	0.48391	0.00025975	-0.15391	-8.2613E-05	0.33001	0.00017714	536.7745697970764	27.159	0.41664	26.99	26.807	27.224	-0.16933					20	7	4	0	0	0	0.0041644	1	9761	9761		148.27	76.346	1	80157000			7613	4913	4344	4378	7389	7389					0.0020026843783398363
EEAQHFIKA	9	Unmodified	_EEAQHFIKA_					0	0	0		ENSG00000167302|ENST00000637944|TEPSIN;nc|ENSG00000167302|Q96N21-2|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	MULTI-MSMS	HCT116MG_D190212_S3	3	358.1856994628906	3	358.185579	1071.53491	-0.077178	-2.7644E-05	0.28481	0.00010202	0.20763	7.4371E-05	358.1856081063094	27.159	0.36456	26.99	26.807	27.172	-0.16933					12	6	3	0	0	0	0.14972	1	9777	9777		36.506	10.485	1	41309000			7614	4913	4344	4378	7390	7390					0.0020026843783398363
EEAQHFIKA	9	Unmodified	_EEAQHFIKA_					0	0	0		ENSG00000167302|ENST00000637944|TEPSIN;nc|ENSG00000167302|Q96N21-2|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	MULTI-MSMS	HCT116MG_D190212_S4	4	536.7748413085938	2	536.774731	1071.53491	0.51596	0.00027695	-0.22019	-0.00011819	0.29577	0.00015876	536.7746169891342	27.392	0.36341	27.08	26.899	27.262	-0.3114					16	6	4	0	0	0	0.0096523	1	9804	9804		114.2	58.025	1	26739000			7615	4913	4344	4378	7391	7391					0.0020026843783398363
EEAQHFIKA	9	Unmodified	_EEAQHFIKA_					0	0	0		ENSG00000167302|ENST00000637944|TEPSIN;nc|ENSG00000167302|Q96N21-2|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	MULTI-MSMS	HCT116MG_D190212_S4	4	358.1853942871094	3	358.185579	1071.53491	0.049198	1.7622E-05	-0.1571	-5.627E-05	-0.1079	-3.8649E-05	358.18543608668097	27.391	0.31148	27.079	26.899	27.21	-0.3114					14	5	4	0	0	0	0.67781	1	9825	9825		4.1895	1.5583	1	13937000			7616	4913	4344	4378	7392	7392					0.0020026843783398363
EEAQHVLEV	9	Unmodified	_EEAQHVLEV_					0	0	0		nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000477222.5_1_2:238402069-238415922:+|nuORF;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-3|MLPH	nc|ENSG00000115648|Q9BV36-3|MLPH	MSMS	HCT116MG_D190212_S1	1	527.263427734375	2	527.264196	1052.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.979	1	36.979	36.479	37.479	0								0	0	0	0.038892	1	13801	13801		74.2	38.073	1				7617	2477	4345	4379	7393	7393					-0.01031741661677188
EEAQPMAAP	9	Oxidation (M)	_EEAQPM(Oxidation (M))AAP_		EEAQPM(1)AAP		EEAQPM(82)AAP	0	0	1		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2106628417969	2	480.210575	958.406597	0.20204	9.7021E-05	0.37472	0.00017994	0.57676	0.00027696	480.2106343983445	20.642	0.47526	20.262	20.023	20.498	-0.37949					12	8	2	0	0	0	0.035349	1	7215	7215		81.89	43.739	1	13486000			7618	6603	4346	4380	7394	7394		139			-0.0742703486754408
EEAQPMAAP	9	Oxidation (M)	_EEAQPM(Oxidation (M))AAP_		EEAQPM(1)AAP		EEAQPM(82)AAP	0	0	1		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S3	3	480.21051025390625	2	480.210575	958.406597	0.11608	5.5744E-05	0.44239	0.00021244	0.55847	0.00026818	480.2104931183706	20.318	0.57273	20.366	20.103	20.676	0.048109					20	10	3	0	0	0	0.035349	1	6990	6990		81.89	40.051	1	11076000			7619	6603	4346	4380	7395	7395		139			-0.0742703486754408
EEAQPMAAP	9	Oxidation (M)	_EEAQPM(Oxidation (M))AAP_		EEAQPM(1)AAP		EEAQPM(72)AAP	0	0	1		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S4	4	480.21044921875	2	480.210575	958.406597	0.33432	0.00016054	0.1738	8.3461E-05	0.50812	0.00024401	480.210397781036	20.488	0.57178	20.286	19.988	20.56	-0.20133					18	10	2	0	0	0	0.055677	2	6974	6974;7003		71.922	43.222	1	7230900			7620	6603	4346	4380	7396;7397	7396		139			-0.0742703486754408
EEAQPMAAP	9	Unmodified	_EEAQPMAAP_					0	0	0		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S2	2	943.4203491210938	1	943.418959	942.411682	0.61717	0.00058225	-0.039093	-3.6881E-05	0.57807	0.00054536	943.4189811362373	28.879	0.30698	28.562	28.402	28.709	-0.31613					10	5	2	0	0	0	0.0066233	1	10560	10560		123.45	38.094	1	32571000			7621	6603	4346	4381	7398	7398					-0.06182731004935249
EEAQPMAAP	9	Unmodified	_EEAQPMAAP_					0	0	0		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S2	2	472.21331787109375	2	472.213117	942.411682	0.19861	9.3784E-05	0.24985	0.00011798	0.44846	0.00021177	472.2132425204946	28.912	0.30698	28.595	28.402	28.709	-0.31613					8	5	2	0	0	0	0.016701	1	10568	10568		99.799	35.563	1	22379000			7622	6603	4346	4381	7399	7399					-0.06182731004935249
EEAQPMAAP	9	Unmodified	_EEAQPMAAP_					0	0	0		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S3	3	943.4193725585938	1	943.418959	942.411682	0.76977	0.00072621	-0.26251	-0.00024765	0.50726	0.00047856	943.4187040888133	28.927	1.0416	28.705	28.004	29.046	-0.22195					35	19	4	0	0	0	0.0066233	1	10470	10470		123.45	38.094	1	37499000			7623	6603	4346	4381	7400	7400					-0.06182731004935249
EEAQPMAAP	9	Unmodified	_EEAQPMAAP_					0	0	0		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S3	3	472.213134765625	2	472.213117	942.411682	0.34092	0.00016099	0.051366	2.4256E-05	0.39229	0.00018525	472.2130644853636	28.932	0.46844	28.71	28.525	28.994	-0.22195					20	8	3	0	0	0	0.016701	1	10474	10474		99.799	45.025	1	27644000			7624	6603	4346	4381	7401	7401					-0.06182731004935249
EEAQPMAAP	9	Unmodified	_EEAQPMAAP_					0	0	0		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S4	4	943.4182739257812	1	943.418959	942.411682	0.58501	0.00055191	-0.084051	-7.9295E-05	0.50096	0.00047262	943.4187269768826	29.041	0.51922	28.7	28.47	28.989	-0.34059					20	9	3	0	0	0	0.0066233	2	10461	10461;10509		123.45	38.094	1	13525000			7625	6603	4346	4381	7402;7403	7402					-0.06182731004935249
EEAQPMAAP	9	Unmodified	_EEAQPMAAP_					0	0	0		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MSMS	HCT116MG_D190212_S4	4	472.2132873535156	2	472.213117	942.411682	0.24809	0.00011715	-0.10807	-5.1034E-05	0.14002	6.6117E-05	472.2129635354484	29.082	0.46729	28.741	28.522	28.989	-0.34059					14	8	2	0	0	0	0.016701	1	10473	10473		99.799	43.622	1	12352000			7626	6603	4346	4381	7404	7404					-0.06182731004935249
EEAQPMAAP	9	Unmodified	_EEAQPMAAP_					0	0	0		ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	ENSG00000255302|ENST00000530028|EID1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	472.213117	942.411682	0.53617	0.00025318	-0.31741	-0.00014988	0.21876	0.0001033	472.2128055890534	28.545	0.21256	28.545	28.429	28.641	0	-0.10288	-0.00037491	NaN	99.799	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2677400			7627	6603	4346	4381							-0.06182731004935249
EEAQSILKA	9	Unmodified	_EEAQSILKA_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7695617675781	2	494.769114	987.523675	0.59616	0.00029496	0.17548	8.6822E-05	0.77164	0.00038178	494.76918874453645	33.597	0.25868	33.404	33.276	33.534	-0.19297					6	4	2	0	0	0	0.027442	1	12505	12505		88.954	32.777	1	16774000			7628	4180	4347	4382	7405	7405					0.029414463437205995
EEAQSILKA	9	Unmodified	_EEAQSILKA_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	494.76910400390625	2	494.769114	987.523675	0.27074	0.00013395	0.47601	0.00023551	0.74675	0.00036947	494.76910378454465	33.775	0.20723	33.485	33.304	33.511	-0.29013					5	3	2	0	0	0	0.061422	1	12412	12412		69.105	31.131	1	4999900			7629	4180	4347	4382	7406	7406					0.029414463437205995
EEAREKMLAA	10	Unmodified	_EEAREKMLAA_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	HCT116MG_D190212_S1	1	574.2921142578125	2	574.29243	1146.57031	0.34089	0.00019577	-0.00056451	-3.2419E-07	0.34032	0.00019545	574.2921781750192	25.013	0.2621	25.013	24.83	25.092	0					8	4	3	0	0	0	0.036884	1	8982	8982		96.936	68.441	1	17279000			7630	1885	4348	4383	7407	7407					0.002885629033698933
EEAREKMLAA	10	Unmodified	_EEAREKMLAA_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	HCT116MG_D190212_S2	2	574.2928466796875	2	574.29243	1146.57031	0.28839	0.00016562	-0.13372	-7.6794E-05	0.15467	8.8825E-05	574.2924764660072	25.525	0.36481	25.156	24.978	25.343	-0.36914					21	6	5	0	0	0	0.017977	1	9184	9184		124.95	84.714	1	130630000			7631	1885	4348	4383	7408	7408					0.002885629033698933
EEAREKMLAA	10	Unmodified	_EEAREKMLAA_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	HCT116MG_D190212_S3	3	574.2929077148438	2	574.29243	1146.57031	0.55464	0.00031852	-0.28114	-0.00016146	0.2735	0.00015707	574.2924095721779	25.075	0.46904	24.969	24.787	25.256	-0.10618					14	8	3	0	0	0	0.035798	1	8939	8939		97.741	57.502	1	30559000			7632	1885	4348	4383	7409	7409					0.002885629033698933
EEAREKMLAA	10	Unmodified	_EEAREKMLAA_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	HCT116MG_D190212_S4	4	574.2935791015625	2	574.29243	1146.57031	0.64224	0.00036884	0.35945	0.00020643	1.0017	0.00057527	574.2924445263169	25.364	0.36411	25.084	24.954	25.318	-0.27958					8	6	2	0	0	0	0.049927	1	8996	8996		87.258	59.629	1	8694000			7633	1885	4348	4383	7410	7410					0.002885629033698933
EEARGLGVA	9	Unmodified	_EEARGLGVA_					0	0	0		ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	MULTI-SECPEP	HCT116MG_D190212_S3	3	450.7193298339844	2	451.240524	900.466495	0.24387	0.00011004	0.29989	0.00013532	0.54376	0.00024537	451.24056459697215	27.471	0.26011	27.302	27.172	27.432	-0.16933					8	4	2	0	0	0	0.064698	1	9898	9898		69.105	25.247	1	5985900			7634	2915	4349	4384	7411	7411					0.012280238580046898
EEARGLGVA	9	Unmodified	_EEARGLGVA_					0	0	0		ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	MULTI-MSMS	HCT116MG_D190212_S4	4	451.2407531738281	2	451.240524	900.466495	0.35659	0.00016091	-0.1272	-5.7398E-05	0.22939	0.00010351	451.24051627585226	27.694	0.2501	27.372	27.2	27.45	-0.32157					7	4	2	0	0	0	0.16306	1	9951	9951		45.7	13.394	1	3556900			7635	2915	4349	4384	7412	7412					0.012280238580046898
EEARGLGVA	9	Unmodified	_EEARGLGVA_					0	0	0		ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	MULTI-MATCH	HCT116MG_D190212_S2	2		2	451.240524	900.466495	0.18849	8.5055E-05	0.33353	0.0001505	0.52202	0.00023556	451.2404105071597	27.663	0.20735	27.321	27.191	27.398	-0.34201	-0.010626	0.00018641	NaN	82.529	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9290300			7636	2915	4349	4384							0.012280238580046898
EEARKFSY	8	Unmodified	_EEARKFSY_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MSMS	HCT116MG_D190212_S1	1	515.2529296875	2	515.253631	1028.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.682	1	16.682	16.182	17.182	0								0	0	0	0.8837	1	5630	5630		10.183	2.2732	1				7637	655	4350	4385	7413	7413					-0.020397069705268223
EEARKLLPP	9	Unmodified	_EEARKLLPP_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	HCT116MG_D190212_S2	2	526.80859375	2	526.808574	1051.60259	0.40734	0.00021459	-0.26004	-0.00013699	0.1473	7.7599E-05	526.8083892678314	29.699	3.8231	29.398	28.621	32.444	-0.30096					89	73	2	0	0	0	0.061422	3	11378	10840;11378;11946		69.105	15.272	1	17502000			7638	6438	4351	4386	7414;7415;7416	7415					0.07885718368675043
EEARKLLPP	9	Unmodified	_EEARKLLPP_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	HCT116MG_D190212_S3	3	526.8092651367188	2	526.808574	1051.60259	0.52094	0.00027444	-0.25866	-0.00013626	0.26228	0.00013817	526.8084382110095	29.718	1.4155	29.481	28.667	30.082	-0.23655					48	26	2	0	0	0	0.12205	1	10816	10816		53.833	3.8998	1	6805600			7639	6438	4351	4386	7417	7417					0.07885718368675043
EEARKLLPP	9	Unmodified	_EEARKLLPP_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	HCT116MG_D190212_S3	3	526.8087158203125	2	526.808574	1051.60259	0.32748	0.00017252	-0.26644	-0.00014036	0.061041	3.2157E-05	526.8084807957925	30.772	1.4082	30.512	30.239	31.648	-0.26071					48	30	2	0	0	0	0.11023	1	11294	11294		56.177	26.336	1	5818800			7640	6438	4351	4386	7418	7418					0.07885718368675043
EEARPSPAP	9	Unmodified	_EEARPSPAP_					0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-MSMS	HCT116MG_D190212_S3	3	477.238037109375	2	477.237981	952.461409	0.19654	9.3797E-05	-0.124	-5.9177E-05	0.072542	3.462E-05	477.23784165545635	18.78	0.2604	18.849	18.719	18.979	0.069159					7	4	2	0	0	0	0.13424	1	6409	6409		51.415	11.466	1	4789000			7641	5059	4352	4387	7419	7419					-0.01672280004629556
EEARPSPAP	9	Unmodified	_EEARPSPAP_					0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-MATCH	HCT116MG_D190212_S2	2		2	477.237981	952.461409	0.2259	0.00010781	0.39317	0.00018764	0.61907	0.00029545	477.2380983779848	19.565	0.31176	19.193	19.042	19.354	-0.3718	0.21979	0.00054439	NaN	51.415	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3686000			7642	5059	4352	4387							-0.01672280004629556
EEARPSPAP	9	Unmodified	_EEARPSPAP_					0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-MATCH	HCT116MG_D190212_S4	4		2	477.237981	952.461409	0.43869	0.00020936	-0.47372	-0.00022608	-0.035031	-1.6718E-05	477.2378632247755	19.065	0.25994	18.878	18.713	18.973	-0.18674	-0.095044	-0.00028304	NaN	51.415	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1422300			7643	5059	4352	4387							-0.01672280004629556
EEARRQGLP	9	Unmodified	_EEARRQGLP_					0	0	0		ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	ENST00000526262.5_1_11:70189825-70228249:+|nuORF	MSMS	HCT116MG_D190212_S4	4	528.2816162109375	2	528.283254	1054.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.485	1	39.105	38.605	39.605	-0.38055								0	0	0	0.74436	1	14509	14509		16.942	0.79319	1				7644	8587	4353	4388	7420	7420					0.026861890436521207
EEARSLREC	9	Unmodified	_EEARSLREC_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592194.1_1_17:66508623-66511738:+|nuORF;PRKAR1A-PITPNC1|1|fusion;PRKAR1A-PITPNC1|2|fusion	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MSMS	HCT116MG_D190212_S2	2	364.8415832519531	3	364.841595	1091.50296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.522	1	20.143	19.643	20.643	-0.37949								0	0	0	0.60272	1	7176	7176		22.775	11.975	1				7645	2190	4354	4389	7421	7421					-0.039134673075977844
EEASANYF	8	Unmodified	_EEASANYF_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S3	3	930.38427734375	1	930.383953	929.376677	0.81446	0.00075776	-0.3642	-0.00033885	0.45026	0.00041892	930.3835638849596	40.335	0.26077	40.033	39.851	40.111	-0.30161					7	4	2	0	0	0	0.057785	1	14980	14980		114.94	58.403	1	6724100			7646	1469	4355	4390	7422	7422					-0.09083650541242605
EEASGIPSRTA	11	Unmodified	_EEASGIPSRTA_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	HCT116MG_D190212_S3	3	559.2774047851562	2	559.277835	1116.54112	0.37626	0.00021044	0.66181	0.00037014	1.0381	0.00058057	559.2780288509962	22.119	0.36449	22.12	21.886	22.25	0.00074577					13	6	3	0	0	0	0.45944	1	7757	7757		49.742	16.956	1	4042800			7647	3105	4356	4391	7423	7423					-0.01249258121265484
EEASGIPSRTA	11	Unmodified	_EEASGIPSRTA_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MATCH	HCT116MG_D190212_S2	2		2	559.277835	1116.54112	0.48656	0.00027212	-0.30197	-0.00016889	0.18459	0.00010323	559.2775230482097	22.605	0.41448	22.22	21.895	22.31	-0.3852	0.088915	-0.00035742	NaN	49.742	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7287200			7648	3105	4356	4391							-0.01249258121265484
EEASGIPSRTA	11	Unmodified	_EEASGIPSRTA_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MATCH	HCT116MG_D190212_S4	4		2	559.277835	1116.54112	0.23452	0.00013116	-0.4342	-0.00024284	-0.19968	-0.00011167	559.2775256294894	22.281	0.25959	22.053	21.936	22.195	-0.22777	-0.077916	-0.00050532	NaN	49.742	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1539600			7649	3105	4356	4391							-0.01249258121265484
EEASLLHQF	9	Unmodified	_EEASLLHQF_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S1	1	537.2667846679688	2	537.266739	1072.51892	0.53702	0.00028852	-0.37359	-0.00020072	0.16343	8.7806E-05	537.2663810923029	45.844	0.20982	45.844	45.713	45.922	0					5	3	2	0	0	0	0.042978	1	17404	17404		78.149	44.047	1	12696000			7650	2459	4357	4392	7424	7424					-0.014434377990482972
EEASLLHQF	9	Unmodified	_EEASLLHQF_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2670288085938	2	537.266739	1072.51892	0.47227	0.00025373	-0.33405	-0.00017947	0.13822	7.4263E-05	537.2664472891256	45.837	0.35908	45.736	45.556	45.915	-0.1014					12	6	3	0	0	0	0.0090481	1	17445	17445		115.69	63.424	1	77483000			7651	2459	4357	4392	7425	7425					-0.014434377990482972
EEASLLHQF	9	Unmodified	_EEASLLHQF_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	537.266739	1072.51892	0.67807	0.0003643	-0.267	-0.00014345	0.41107	0.00022085	537.266242697803	46.119	0.16264	45.806	45.667	45.829	-0.31237	0.010906	7.5776E-05	NaN	115.69	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6293500			7652	2459	4357	4392							-0.014434377990482972
EEASMGASY	9	Unmodified	_EEASMGASY_					0	0	0		ENST00000438741.1_1_3:10076402-10082221:+|nuORF;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2	ENST00000438741.1_1_3:10076402-10082221:+|nuORF	ENST00000438741.1_1_3:10076402-10082221:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	944.3689575195312	1	944.366589	943.359312	0.62181	0.00058722	0.19095	0.00018033	0.81276	0.00076755	944.3669174542043	28.896	0.25611	28.58	28.453	28.709	-0.31613					7	4	2	0	0	0	0.19218	1	10591	10591		42.095	2.1372	1	17816000			7653	3866	4358	4393	7426	7426					-0.11463314138541136
EEASMGASY	9	Unmodified	_EEASMGASY_					0	0	0		ENST00000438741.1_1_3:10076402-10082221:+|nuORF;nc|ENSG00000144554|Q9BXW9-4|FANCD2;FANCD2|p.N890Ifs*14|1|0.36|ENSG00000144554|chr3:10073312-10073312|A/-|frameshift_variant;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.I1249Nfs*2|1|0.48|ENSG00000144554|chr3:10090346-10090347|-/A|frameshift_variant;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2	ENST00000438741.1_1_3:10076402-10082221:+|nuORF	ENST00000438741.1_1_3:10076402-10082221:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	944.3673095703125	1	944.366589	943.359312	0.78934	0.00074542	0.18207	0.00017194	0.97141	0.00091736	944.3667649801544	28.929	0.31256	28.707	28.525	28.838	-0.22195					9	5	2	0	0	0	0.2682	1	10496	10496		34.102	1.797	1	7944400			7654	3866	4358	4393	7427	7427					-0.11463314138541136
EEATIIHHY	9	Unmodified	_EEATIIHHY_					0	0	0		ENST00000461652.2_1_13:31835091-31857210:+|nuORF;ENSG00000187676|ENST00000343307|B3GLCT	ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENST00000461652.2_1_13:31835091-31857210:+|nuORF	MSMS	HCT116MG_D190212_S1	1	556.7720336914062	2	556.772188	1111.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.195	1	27.195	26.695	27.695	0								0	0	0	0.09823	1	9858	9858		56.541	33.393	1				7655	5952	4359	4394	7428	7428					-0.02148035424761474
EEATIIHHY	9	Unmodified	_EEATIIHHY_					0	0	0		ENST00000461652.2_1_13:31835091-31857210:+|nuORF;ENSG00000187676|ENST00000343307|B3GLCT	ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENST00000461652.2_1_13:31835091-31857210:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.4474487304688	2	556.772188	1111.52982	0.48201	0.00026837	-1.0443	-0.00058144	-0.5623	-0.00031307	556.7714817770932	27.611	0.20776	27.269	27.139	27.347	-0.34201					5	3	2	0	0	0	0.030667	1	10032	10032		81.864	56.465	1	11903000			7656	5952	4359	4394	7429	7429					-0.02148035424761474
EEATIIHHY	9	Unmodified	_EEATIIHHY_					0	0	0		ENST00000461652.2_1_13:31835091-31857210:+|nuORF;ENSG00000187676|ENST00000343307|B3GLCT	ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENST00000461652.2_1_13:31835091-31857210:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	556.772188	1111.52982	0.42078	0.00023428	0.03715	2.0684E-05	0.45793	0.00025496	556.7722701288885	27.099	0.1561	27.099	27.022	27.178	0	-0.084897	0.00057115	NaN	81.864	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3674600			7657	5952	4359	4394							-0.02148035424761474
EEATSSVEIA	10	Unmodified	_EEATSSVEIA_					0	0	0		STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant;nc|ENSG00000130052|Q92502|STARD8;STARD8|p.L976Afs*8|1|0.27|ENSG00000130052|chrX:68724090-68724091|-/G|frameshift_variant;ENSG00000130052|ENST00000374599|STARD8	STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	518.2459106445312	2	518.245669	1034.47678	0.11314	5.8633E-05	0.5928	0.00030722	0.70594	0.00036585	518.2459535837294	23.07	0.67855	22.832	22.655	23.334	-0.23758					17	12	3	0	0	0	0.33066	1	8061	8061		47.749	2.0088	1	9118200			7658	3055	4360	4395	7430	7430					-0.0390745799807064
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	HCT116MG_D190212_S1	1	577.7571411132812	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.34	1	15.34	14.84	15.84	0								0	0	0	0.96937	1	5089	5089		0.40072	0.40072	1		+		7659	13315	4361	4396	7431	7431					-0.3370121624063813
EECCCCCCEM	10	Unmodified	_EECCCCCCEM_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	HCT116MG_D190212_S3	3	578.2714233398438	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.221	1	28.999	28.499	29.499	-0.22195								0	0	0	0.96937	1	10607	10607		0.40072	0.40072	1		+		7660	13315	4361	4396	7432	7432					-0.3370121624063813
EECKEKLVP	9	Carbamidomethyl (C)	_EEC(Carbamidomethyl (C))KEKLVP_	EEC(1)KEKLVP		EEC(46)KEKLVP		0	1	0		nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1;GSPT2|p.K564Nfs*13|1|0.21|ENSG00000189369|chrX:51745313-51745313|A/-|frameshift_variant;ENSG00000189369|ENST00000340438|GSPT2	nc|ENSG00000103342|P15170-2|GSPT1	nc|ENSG00000103342|P15170-2|GSPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	566.2799072265625	2	566.289356	1130.56416	0.5843	0.00033089	0.76085	0.00043086	1.3452	0.00076175	566.2899153923057	27.21	0.31539	26.857	26.659	26.975	-0.35254					6	5	2	0	0	0	0.16144	1	9901	9901		46.021	9.8939	1	5483200			7661	1891	4362	4397	7433	7433	7				0.00410044671821197
EECKFAHPP	9	Carbamidomethyl (C)	_EEC(Carbamidomethyl (C))KFAHPP_	EEC(1)KFAHPP		EEC(130)KFAHPP		0	1	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7533569335938	2	557.752941	1113.49133	0.40069	0.00022349	0.068996	3.8483E-05	0.46969	0.00026197	557.75292556553	24.797	0.8847	24.422	23.931	24.816	-0.3756					35	16	3	0	0	0	0.0062667	1	8850	8850		126.57	90.06	1	63335000			7662	3646	4363	4398	7434	7434	18				-0.06087664330948428
EECKFAHPP	9	Carbamidomethyl (C)	_EEC(Carbamidomethyl (C))KFAHPP_	EEC(1)KFAHPP		EEC(140)KFAHPP		0	1	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	MULTI-MSMS	HCT116MG_D190212_S3	3	558.2554931640625	2	557.752941	1113.49133	0.31675	0.00017667	-0.23913	-0.00013338	0.077616	4.329E-05	557.7529237167957	24.363	0.93692	24.279	23.82	24.757	-0.083694					26	17	3	0	0	0	0.0051486	1	8637	8637		136.33	94.239	1	8524700			7663	3646	4363	4398	7435	7435	18				-0.06087664330948428
EECKFAHPP	9	Carbamidomethyl (C)	_EEC(Carbamidomethyl (C))KFAHPP_	EEC(1)KFAHPP		EEC(72)KFAHPP		0	1	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	MULTI-MSMS	HCT116MG_D190212_S4	4	557.7533569335938	2	557.752941	1113.49133	0.47578	0.00026537	-0.10435	-5.82E-05	0.37143	0.00020717	557.7528560149225	24.636	0.41486	24.367	24.186	24.601	-0.26881					12	7	2	0	0	0	0.055677	1	8705	8705		71.922	37.82	1	2731600			7664	3646	4363	4398	7436	7436	18				-0.06087664330948428
EEDARWTRP	9	Unmodified	_EEDARWTRP_					0	0	0		ENSG00000174137|ENST00000308132|FAM53A	ENSG00000174137|ENST00000308132|FAM53A	ENSG00000174137|ENST00000308132|FAM53A	MSMS	HCT116MG_D190212_S2	2	580.27685546875	2	580.278169	1158.54179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.391	1	18.028	17.528	18.528	-0.36325								0	0	0	0.76823	1	6318	6318		3.5965	0	1				7665	5319	4364	4399	7437	7437					-0.031144186815936337
EEDDDDDEID	10	Unmodified	_EEDDDDDEID_					0	0	0		TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	605.197998046875	2	605.19931	1208.38407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.651	1	21.266	20.766	21.766	-0.38503								0	0	0	0.95351	1	7631	7631		3.9444	2.2918	1				7666	1430	4365	4400	7438	7438					-0.21179052312800195
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S1	1	388.1276550292969	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7137	1	2.7137	2.2137	3.2137	0								0	0	0	0.77025	1	814	814		0	0	1				7667	2231	4366	4401	7439	7439					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S1	1	388.1277160644531	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.448	1	64.448	63.948	64.948	0								0	0	0	0.77025	1	24859	24859		0	0	1				7668	2231	4366	4401	7440	7440					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S2	2	388.12774658203125	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.123	1	13.811	13.311	14.311	-0.31202								0	0	0	0.77025	1	4610	4610		0	0	1				7669	2231	4366	4401	7441	7441					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S4	4	388.12762451171875	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7619	1	2.4974	1.9974	2.9974	-0.26456								0	0	0	0.77025	1	848	848		0	0	1				7670	2231	4366	4401	7442	7442					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S4	4	388.12774658203125	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.7788	1	3.5143	3.0143	4.0143	-0.26456								0	0	0	0.77025	1	1157	1157		0	0	1				7671	2231	4366	4401	7443	7443					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S4	4	388.1278381347656	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3914	1	6.1345	5.6345	6.6345	-0.25684								0	0	0	0.77025	1	1954	1954		0	0	1				7672	2231	4366	4401	7444	7444					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S4	4	388.1275634765625	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4096	1	7.1681	6.6681	7.6681	-0.24153								0	0	0	0.77025	1	2268	2268		0	0	1				7673	2231	4366	4401	7445	7445					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S4	4	388.1276550292969	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9101	1	7.6686	7.1686	8.1686	-0.24153								0	0	0	0.77025	1	2420	2420		0	0	1				7674	2231	4366	4401	7446	7446					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S4	4	388.12762451171875	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4389	1	9.2292	8.7292	9.7292	-0.20971								0	0	0	0.77025	1	2886	2886		0	0	1				7675	2231	4366	4401	7447	7447					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S4	4	388.12750244140625	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9452	1	9.7459	9.2459	10.246	-0.1993								0	0	0	0.77025	1	3048	3048		0	0	1				7676	2231	4366	4401	7448	7448					-0.21201812270714981
EEDDYDDDF	9	Unmodified	_EEDDYDDDF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S4	4	388.12762451171875	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.474	1	11.293	10.793	11.793	-0.18135								0	0	0	0.77025	1	3545	3545		0	0	1				7677	2231	4366	4401	7449	7449					-0.21201812270714981
EEDEAGGRFVA	11	Unmodified	_EEDEAGGRFVA_					0	0	0		nc|ENSG00000070010|Q92890-1|UFD1;ENSG00000070010|ENST00000263202|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	MULTI-MSMS	HCT116MG_D190212_S3	3	590.267333984375	2	590.267467	1178.52038	0.63271	0.00037347	-0.11019	-6.5042E-05	0.52252	0.00030843	590.2671981491667	30.137	0.26205	29.887	29.755	30.017	-0.24946					7	4	2	0	0	0	0.52297	1	10996	10996		43.982	29.576	1	7556700			7678	1228	4367	4402	7450	7450					-0.06173848500930035
EEDEAGGRFVA	11	Unmodified	_EEDEAGGRFVA_					0	0	0		nc|ENSG00000070010|Q92890-1|UFD1;ENSG00000070010|ENST00000263202|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	MSMS	HCT116MG_D190212_S4	4	590.2672729492188	2	590.267467	1178.52038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.335	1	29.977	29.477	30.477	-0.3571								0	0	0	0.45422	1	10993	10993		49.527	24.128	1				7679	1228	4367	4402	7451	7451					-0.06173848500930035
EEDEAGGRFVA	11	Unmodified	_EEDEAGGRFVA_					0	0	0		nc|ENSG00000070010|Q92890-1|UFD1;ENSG00000070010|ENST00000263202|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	590.267467	1178.52038	0.64605	0.00038135	-0.67443	-0.00039809	-0.028372	-1.6747E-05	590.7685893236852	30.292	0.20778	29.935	29.753	29.961	-0.3571	0.023836	-0.00040553	NaN	43.982	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4241100			7680	1228	4367	4402							-0.06173848500930035
EEDEECDY	8	Unmodified	_EEDEECDY_					0	0	0			REV__nc|ENSG00000148219|O75129-2|ASTN2	REV__nc|ENSG00000148219|O75129-2|ASTN2	MSMS	HCT116MG_D190212_S3	3	516.1588745117188	2	516.160945	1030.30734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.256	1	62.024	61.524	62.524	-0.23129								0	0	0	0.8837	1	23779	23779		0.69038	0.23204	1		+		7681	12533	4368	4403	7452	7452					-0.2066052234295057
EEDEEETKYE	10	Unmodified	_EEDEEETKYE_					0	0	0		nc|ENSG00000163806|Q5MJ70-1|SPDYA;ENST00000462832.5_1_2:29038880-29063343:+|nuORF;ENSG00000163806|ENST00000334056|SPDYA	nc|ENSG00000163806|Q5MJ70-1|SPDYA	nc|ENSG00000163806|Q5MJ70-1|SPDYA	MSMS	HCT116MG_D190212_S1	1	650.7596435546875	2	650.756795	1299.49904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.201	1	24.201	23.701	24.701	0								0	0	0	0.92607	1	8653	8653		10.074	3.3508	1				7682	4634	4369	4404	7453	7453					-0.13873323111010905
EEDIRDLAA	9	Unmodified	_EEDIRDLAA_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	516.25390625	2	516.253828	1030.4931	0.50592	0.00026118	-1.3258	-0.00068443	-0.81985	-0.00042325	516.2536296847535	35.397	0.31123	35.397	35.215	35.526	0					10	5	3	0	0	0	0.051033	1	13181	13181		74.2	32.36	1	9342500			7683	1793	4370	4405	7454	7454					-0.0209233204134307
EEDIRDLAA	9	Unmodified	_EEDIRDLAA_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2532958984375	2	516.253828	1030.4931	0.13969	7.2113E-05	-0.41634	-0.00021494	-0.27666	-0.00014283	516.2536102632539	35.415	0.24712	35.273	35.139	35.386	-0.14245					7	4	2	0	0	0	0.016412	1	13222	13222		100.09	46.258	1	66257000			7684	1793	4370	4405	7455	7455					-0.0209233204134307
EEDIRDLAA	9	Unmodified	_EEDIRDLAA_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	HCT116MG_D190212_S3	3	516.2538452148438	2	516.253828	1030.4931	0.66198	0.00034175	-0.019671	-1.0155E-05	0.64231	0.0003316	516.2536001442851	35.641	0.24726	35.342	35.236	35.483	-0.29922					31	14	3	0	0	0	0.011132	1	13125	13125		110.55	47.98	1	56268000			7685	1793	4370	4405	7456	7456					-0.0209233204134307
EEDIRDLAA	9	Unmodified	_EEDIRDLAA_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	HCT116MG_D190212_S4	4	516.253662109375	2	516.253828	1030.4931	0.47451	0.00024497	-0.2897	-0.00014956	0.18481	9.5409E-05	516.253444921934	35.711	0.1897	35.325	35.243	35.433	-0.38606					25	17	2	0	0	0	0.016412	1	13041	13041		100.09	43.914	1	20816000			7686	1793	4370	4405	7457	7457					-0.0209233204134307
EEDKKKVIA	9	Unmodified	_EEDKKKVIA_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.3062133789062	2	530.305864	1058.59717	0.38656	0.000205	0.20754	0.00011006	0.59411	0.00031506	530.3060653649303	16.412	0.20884	16.07	15.943	16.152	-0.34183					7	3	3	0	0	0	0.19461	1	5545	5545		41.84	14.211	1	5296900			7687	2330	4371	4406	7458	7458					0.07021994786191499
EEDKNSYTP	9	Unmodified	_EEDKNSYTP_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000130477|ENST00000519716|UNC13A	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7355346679688	2	541.735468	1081.45638	0.40966	0.00022193	0.0091682	4.9668E-06	0.41883	0.0002269	541.7353223338031	21.49	0.42367	21.509	21.271	21.694	0.018446					13	7	2	0	0	0	0.14171	1	7486	7486		49.933	7.8384	1	6027300			7688	6258	4372	4407	7459	7459					-0.08108628657896588
EEDKQQKIA	9	Unmodified	_EEDKQQKIA_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	544.7830200195312	2	544.782753	1087.55095	0.50621	0.00027578	0.16245	8.8499E-05	0.66866	0.00036427	544.7828181255993	15.926	0.20825	15.926	15.796	16.004	0					5	3	2	0	0	0	0.12205	1	5342	5342		53.833	23.196	1	5122200			7689	434	4373	4408	7460	7460					0.010679298841068885
EEDKQQKIA	9	Unmodified	_EEDKQQKIA_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	544.7830200195312	2	544.782753	1087.55095	0.42321	0.00023056	0.16213	8.8328E-05	0.58534	0.00031888	544.7828231681199	16.207	0.47017	15.872	15.689	16.159	-0.33451					13	8	2	0	0	0	0.0051419	2	5441	5441;5490		136.39	53.863	1	20935000			7690	434	4373	4408	7461;7462	7461					0.010679298841068885
EEDKRTSVP	9	Unmodified	_EEDKRTSVP_					0	0	0		ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2;RAD54L2|p.S971R|1|0.37|ENSG00000164080|chr3:51646368-51646368|C/A|missense_variant	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MSMS	HCT116MG_D190212_S2	2	530.7672729492188	2	530.767103	1059.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.576	1	18.213	17.713	18.713	-0.36325								0	0	0	0.068938	1	6392	6392		61.602	27.499	1				7691	4665	4374	4409	7463	7463					-0.007726431499804676
EEDQGSKLI	9	Unmodified	_EEDQGSKLI_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MSMS	HCT116MG_D190212_S1	1	510.25750732421875	2	509.756204	1017.49785	0.54658	0.00027862	0.035694	1.8195E-05	0.58227	0.00029682	509.75616394264523	30.841	0.31223	30.841	30.711	31.023	0					8	5	2	0	0	0	0.023778	1	11339	11339		92.653	14.504	1	4873200			7692	5623	4375	4410	7464	7464					-0.010194478985567912
EEDQGSKLI	9	Unmodified	_EEDQGSKLI_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MSMS	HCT116MG_D190212_S2	2	509.7566223144531	2	509.756204	1017.49785	0.3943	0.000201	-0.11682	-5.9549E-05	0.27748	0.00014145	509.7561457978065	31.112	0.36123	30.845	30.716	31.077	-0.26704					11	6	2	0	0	0	0.0068427	1	11475	11475		121.53	39.644	1	48738000			7693	5623	4375	4410	7465	7465					-0.010194478985567912
EEDQGSKLI	9	Unmodified	_EEDQGSKLI_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MSMS	HCT116MG_D190212_S3	3	509.7565612792969	2	509.756204	1017.49785	0.1134	5.7807E-05	0.42236	0.0002153	0.53576	0.00027311	509.7561968689484	31.288	0.52238	31.027	30.813	31.335	-0.26071					24	9	3	0	0	0	0.0068427	1	11409	11409		121.53	39.644	1	33753000			7694	5623	4375	4410	7466	7466					-0.010194478985567912
EEDQGSKLI	9	Unmodified	_EEDQGSKLI_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MSMS	HCT116MG_D190212_S4	4	510.2576599121094	2	509.756204	1017.49785	0.12069	6.152E-05	0.036474	1.8593E-05	0.15716	8.0113E-05	509.7561606760495	31.42	0.36382	31.049	30.868	31.231	-0.37026					14	6	3	0	0	0	0.0068427	2	11395	11395;11404		121.53	39.644	1	15770000			7695	5623	4375	4410	7467;7468	7467					-0.010194478985567912
EEDQGSKLIR	10	Unmodified	_EEDQGSKLIR_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MSMS	HCT116MG_D190212_S1	1	587.8068237304688	2	587.806759	1173.59897	0.60018	0.00035279	-0.037796	-2.2217E-05	0.56238	0.00033057	587.8066809904998	22.402	0.26099	22.402	22.22	22.481	0					11	4	3	0	0	0	0.013207	1	7931	7931		154.75	78.992	1	11907000			7696	5623	4376	4411	7469	7469					0.01911003804139
EEDQGSKLIR	10	Unmodified	_EEDQGSKLIR_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MSMS	HCT116MG_D190212_S1	1	392.2067565917969	3	392.206932	1173.59897	-0.10222	-4.0093E-05	-0.10938	-4.2898E-05	-0.2116	-8.2991E-05	392.206821981234	22.372	0.20882	22.372	22.272	22.481	0					6	3	2	0	0	0	0.55099	1	7941	7941		31.636	18.021	1	3674500			7697	5623	4376	4411	7470	7470					0.01911003804139
EEDQGSKLIR	10	Unmodified	_EEDQGSKLIR_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MSMS	HCT116MG_D190212_S2	2	392.2079772949219	3	392.206932	1173.59897	0.050497	1.9805E-05	1.116	0.00043771	1.1665	0.00045752	392.20755026140046	22.929	0.2598	22.544	22.362	22.622	-0.3852					8	4	3	0	0	0	0.13746	1	8152	8152		66.683	38.449	1	22671000			7698	5623	4376	4411	7471	7471					0.01911003804139
EEDQGSKLIR	10	Unmodified	_EEDQGSKLIR_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MSMS	HCT116MG_D190212_S3	3	587.8074340820312	2	587.806759	1173.59897	0.48914	0.00028752	0.14966	8.7972E-05	0.6388	0.00037549	587.806820088906	22.276	0.20847	22.276	22.146	22.354	0.00074577					7	3	3	0	0	0	0.029228	1	7814	7814		117.84	55.265	1	8410300			7699	5623	4376	4411	7472	7472					0.01911003804139
EEDQGSKLIR	10	Unmodified	_EEDQGSKLIR_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	587.806759	1173.59897	0.52635	0.00030939	0.17543	0.00010312	0.70178	0.00041251	587.8067404636187	22.929	0.2598	22.544	22.362	22.622	-0.3852	0.13648	5.0875E-05	NaN	154.75	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43824000			7700	5623	4376	4411							0.01911003804139
EEDQGSKLIR	10	Unmodified	_EEDQGSKLIR_					0	0	0		ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	ENSG00000181061|ENST00000321331|HIGD1A	MULTI-MATCH	HCT116MG_D190212_S3	3		3	392.206932	1173.59897	-0.07265	-2.8494E-05	-0.046552	-1.8258E-05	-0.1192	-4.6752E-05	392.20686481355165	22.276	0.20845	22.276	22.094	22.302	0.00074577	-0.12108	-0.00018278	NaN	66.683	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5655500			7701	5623	4376	4411							0.01911003804139
EEDSDALCFA	10	Unmodified	_EEDSDALCFA_					0	0	0			REV__nc|ENSG00000136478|Q8IWB9-2|TEX2	REV__nc|ENSG00000136478|Q8IWB9-2|TEX2	MSMS	HCT116MG_D190212_S4	4	550.217529296875	2	550.216054	1098.41756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.787	1	34.401	33.901	34.901	-0.38606								0	0	0	0.95351	1	12716	12716		3.9444	0	1		+		7702	12133	4377	4412	7473	7473					-0.12771677283922145
EEDSGDMCDA	10	Unmodified	_EEDSGDMCDA_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	HCT116MG_D190212_S1	1	536.165771484375	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.472	1	50.472	49.972	50.972	0								0	0	0	0.96377	1	19259	19259		1.6526	0.85899	1		+		7703	11761	4378	4413	7474	7474					-0.21549077329086685
EEDSPKREPKR	11	Unmodified	_EEDSPKREPKR_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MSMS	HCT116MG_D190212_S1	1	685.591552734375	2	685.854772	1369.69499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.529	1	24.529	24.029	25.029	0								0	0	0	0.9465	1	8785	8785		8.1555	2.4237	1		+		7704	11158	4379	4414	7475	7475					0.024931516442165957
EEDVDMLP	8	Unmodified	_EEDVDMLP_					0	0	0			REV__nc|ENSG00000068878|Q14997-3|PSME4	REV__nc|ENSG00000068878|Q14997-3|PSME4	MSMS	HCT116MG_D190212_S3	3	474.2056884765625	2	474.204958	946.395363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.386	1	57.107	56.607	57.607	-0.27913								0	0	0	0.8837	1	21807	21807		2.5775	0	1		+		7705	10740	4380	4415	7476	7476					-0.07997856961696925
EEDYMYDT	8	Unmodified	_EEDYMYDT_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MSMS	HCT116MG_D190212_S3	3	533.1912841796875	2	533.189505	1064.36446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.499	1	55.207	54.707	55.707	-0.2918								0	0	0	0.8837	1	21054	21054		5.7604	1.0044	1		+		7706	17171	4381	4416	7477	7477					-0.16515055066588502
EEEAKRMSL	9	Unmodified	_EEEAKRMSL_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MULTI-MSMS	HCT116MG_D190212_S1	1	546.2721557617188	2	546.771331	1091.52811	0.65852	0.00036006	-1.0999	-0.00060141	-0.44142	-0.00024135	546.7709308604034	20.612	0.93849	20.612	20.018	20.956	0					32	17	3	0	0	0	0.49914	1	7116	7116		16.942	1.0951	1	51199000	+		7707	11663	4382	4417	7478	7478					-0.013994125050203365
EEEAKTVSA	9	Unmodified	_EEEAKTVSA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MSMS	HCT116MG_D190212_S2	2	482.23529052734375	2	482.235104	962.455655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.156	1	17.8	17.3	18.3	-0.35647								0	0	0	0.040848	1	6223	6223		72.968	25.219	1				7708	927	4383	4418	7479	7479					-0.027074233069583897
EEEAKTVSA	9	Unmodified	_EEEAKTVSA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	482.2352600097656	2	482.235104	962.455655	-0.055653	-2.6838E-05	0.37639	0.00018151	0.32074	0.00015467	482.23531367342156	17.27	0.41607	17.354	17.225	17.641	0.084467					9	7	2	0	0	0	0.090581	1	5797	5797		60.074	12.325	1	7190200			7709	927	4383	4418	7480	7480					-0.027074233069583897
EEEAKTVSA	9	Unmodified	_EEEAKTVSA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	482.235104	962.455655	-0.1233	-5.9461E-05	0.15387	7.4199E-05	0.030563	1.4739E-05	482.23507999740275	17.525	0.15584	17.355	17.225	17.381	-0.17047	0.00010044	-8.6756E-05	NaN	60.074	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1335300			7710	927	4383	4418							-0.027074233069583897
EEEARAGHLL	10	Unmodified	_EEEARAGHLL_					0	0	0		ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENST00000460243.1_1_3:53262881-53263452:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	562.789794921875	2	562.78837	1123.56219	0.32859	0.00018492	0.58681	0.00033025	0.91539	0.00051517	563.2901818793775	23.044	0.26016	23.005	22.875	23.135	-0.03968					7	4	2	0	0	0	0.72678	1	8143	8143		18.146	0	1	8170000			7711	8041	4384	4419	7481	7481					0.005347519782390009
EEEDDDDKP	9	Unmodified	_EEEDDDDKP_					0	0	0			REV__ENSG00000116254|ENST00000262450|CHD5	REV__ENSG00000116254|ENST00000262450|CHD5	MULTI-SECPEP	HCT116MG_D190212_S1	1	546.2720947265625	2	546.204198	1090.39384	0.68241	0.00037274	2.1849	0.0011934	2.8674	0.0015662	546.2049711691673	20.704	0.15598	20.704	20.592	20.748	0					4	2	2	0	0	0	0.24195	1	7218	7218		12.532	8.2023	1	1129900	+		7712	10171	4385	4420	7482	7482					-0.1477381951674488
EEEDDLIVE	9	Unmodified	_EEEDDLIVE_					0	0	0			REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	REV__WDR87|p.K2720Rfs*57|5|0.35|ENSG00000171804|chr19:37885395-37885395|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	545.7439575195312	2	545.742959	1089.47137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.096	1	26.926	26.426	27.426	-0.16933								0	0	0	0.74436	1	9750	9750		16.942	1.0951	1		+		7713	13359	4386	4421	7483	7483					-0.06979181580550176
EEEDFHPP	8	Unmodified	_EEEDFHPP_					0	0	0		ENSG00000082497|ENST00000367012|SERTAD4;ENST00000482421.1_1_1:210411290-210419944:+|nuORF	ENSG00000082497|ENST00000367012|SERTAD4	ENSG00000082497|ENST00000367012|SERTAD4	MSMS	HCT116MG_D190212_S2	2	500.20477294921875	2	500.206347	998.39814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.446	1	15.119	14.619	15.619	-0.32684								0	0	0	0.8837	1	5132	5132		15.768	1.1865	1				7714	1422	4387	4422	7484	7484					-0.10112265512520935
EEEDPAMKP	9	Unmodified	_EEEDPAMKP_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	HCT116MG_D190212_S3	3	523.2291870117188	2	523.228965	1044.44338	0.21239	0.00011113	0.577	0.0003019	0.78939	0.00041303	523.2292508071654	24.083	0.36469	24.022	23.791	24.155	-0.061449					10	6	2	0	0	0	0.21258	1	8552	8552		39.95	25.111	1	2704700			7715	1916	4388	4423	7485	7485					-0.0770678304163539
EEEDVTTCTKS	11	Unmodified	_EEEDVTTCTKS_					0	0	0		ENST00000551697.5_1_12:50524330-50526777:-|nuORF;ENST00000550079.1_1_12:50524330-50528523:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5	ENST00000551697.5_1_12:50524330-50526777:-|nuORF	ENST00000551697.5_1_12:50524330-50526777:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1241.5196533203125	1	1241.52019	1240.51291	0.4278	0.00053113	-0.3094	-0.00038412	0.11841	0.000147	1241.5195891415756	40.15	0.31091	40.15	39.969	40.28	0					12	5	3	0	0	0	0.6977	1	15089	15089		22.658	6.509	1	26023000			7716	3635	4389	4424	7486	7486					-0.09772368883545823
EEEDVTTCTKS	11	Unmodified	_EEEDVTTCTKS_					0	0	0		ENST00000551697.5_1_12:50524330-50526777:-|nuORF;ENST00000550079.1_1_12:50524330-50528523:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5	ENST00000551697.5_1_12:50524330-50526777:-|nuORF	ENST00000551697.5_1_12:50524330-50526777:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1241.5203857421875	1	1241.52019	1240.51291	0.61202	0.00075983	-0.29044	-0.00036059	0.32158	0.00039924	1241.5197141395097	40.233	0.46779	40.16	39.945	40.413	-0.072842					24	8	4	0	0	0	0.71182	1	15154	15154		17.443	17.443	1	206750000			7717	3635	4389	4424	7487	7487					-0.09772368883545823
EEEDVTTCTKS	11	Unmodified	_EEEDVTTCTKS_					0	0	0		ENST00000551697.5_1_12:50524330-50526777:-|nuORF;ENST00000550079.1_1_12:50524330-50528523:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5	ENST00000551697.5_1_12:50524330-50526777:-|nuORF	ENST00000551697.5_1_12:50524330-50526777:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1241.5211181640625	1	1241.52019	1240.51291	0.65721	0.00081594	-0.3496	-0.00043404	0.30761	0.00038191	1241.5197591010176	40.405	0.46856	40.103	39.955	40.423	-0.30161					20	8	4	0	0	0	0.6977	1	14995	14995		22.658	6.509	1	33329000			7718	3635	4389	4424	7488	7488					-0.09772368883545823
EEEDVTTCTKS	11	Unmodified	_EEEDVTTCTKS_					0	0	0		ENST00000551697.5_1_12:50524330-50526777:-|nuORF;ENST00000550079.1_1_12:50524330-50528523:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5	ENST00000551697.5_1_12:50524330-50526777:-|nuORF	ENST00000551697.5_1_12:50524330-50526777:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1241.5205078125	1	1241.52019	1240.51291	0.39409	0.00048927	-0.025402	-3.1537E-05	0.36869	0.00045773	1241.5199378139932	40.483	0.29803	40.104	39.988	40.286	-0.37828					12	5	3	0	0	0	0.6626	1	14858	14858		28.495	12.345	1	9850200			7719	3635	4389	4424	7489	7489					-0.09772368883545823
EEEEAKTVSA	10	Unmodified	_EEEEAKTVSA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	546.7565307617188	2	546.756401	1091.49825	0.33166	0.00018134	1.1602	0.00063436	1.4919	0.0008157	546.7559581530427	19.121	0.6771	18.751	18.263	18.94	-0.3695					25	12	3	0	0	0	0.54524	1	6617	6617		32.037	7.0465	1	29281000			7720	927	4390	4425	7490	7490					-0.04384072969378394
EEEEAKTVSA	10	Unmodified	_EEEEAKTVSA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	546.7664184570312	2	546.756401	1091.49825	0.44227	0.00024181	0.16497	9.0197E-05	0.60724	0.00033201	546.7563961150207	18.363	0.4688	18.439	18.309	18.778	0.076334					13	8	2	0	0	0	0.65928	1	6198	6198		23.79	1.0535	1	26608000			7721	927	4390	4425	7491	7491					-0.04384072969378394
EEEEAKTVSA	10	Unmodified	_EEEEAKTVSA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	546.7565307617188	2	546.756401	1091.49825	0.442	0.00024167	0.12642	6.9123E-05	0.56842	0.00031079	546.7562695329547	18.614	0.36382	18.433	18.304	18.667	-0.18052					9	6	2	0	0	0	0.072018	1	6281	6281		79.596	10.491	1	9608700			7722	927	4390	4425	7492	7492					-0.04384072969378394
EEEEAKTVSA	10	Unmodified	_EEEEAKTVSA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	546.756401	1091.49825	0.4341	0.00023735	-0.75714	-0.00041397	-0.32304	-0.00017662	546.7559127387252	18.636	0.20839	18.636	18.506	18.714	0	0.071088	-0.00081993	NaN	79.596	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1225400			7723	927	4390	4425							-0.04384072969378394
EEEEAKTVSA	10	Unmodified	_EEEEAKTVSA_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	546.756401	1091.49825	0.44227	0.00024181	0.16497	9.0197E-05	0.60724	0.00033201	546.7563961150207	18.363	0.4688	18.439	18.309	18.778	0.076334	-0.12571	0.00018841	NaN	79.596	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26608000			7724	927	4390	4425							-0.04384072969378394
EEEEEDDEP	9	Unmodified	_EEEEEDDEP_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MSMS	HCT116MG_D190212_S3	3	560.6959838867188	2	560.693663	1119.37277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.126	1	20.175	19.675	20.675	0.048107								0	0	0	0.7689	1	6943	6943		4.756	0	1		+		7725	17328	4391	4426	7493	7493					-0.1821382961627478
EEEEEDEEEYF	11	Unmodified	_EEEEEDEEEYF_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MSMS	HCT116MG_D190212_S1	1	492.84393310546875	3	492.843941	1475.50999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.396	1	10.396	9.8959	10.896	0								0	0	0	0.9619	1	3187	3187		0.094841	0	1				7726	3720	4392	4427	7494	7494					-0.20873965527380278
EEEEFNTGP	9	Unmodified	_EEEEFNTGP_					0	0	0		nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	MULTI-MSMS	HCT116MG_D190212_S3	3	1051.4217529296875	1	1051.42146	1050.41418	0.50322	0.00052909	-0.038324	-4.0295E-05	0.46489	0.0004888	1051.4213914200636	31.019	0.46958	30.758	30.552	31.022	-0.26071					18	8	3	0	0	0	0.0046012	1	11299	11299		141.83	99.732	1	14130000			7727	2904	4393	4428	7495	7495					-0.10900604066250708
EEEEFNTGP	9	Unmodified	_EEEEFNTGP_					0	0	0		nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	MULTI-MSMS	HCT116MG_D190212_S3	3	526.2141723632812	2	526.214369	1050.41418	0.28917	0.00015217	0.013051	6.8676E-06	0.30222	0.00015903	526.214325436053	31.047	0.36515	30.787	30.552	30.917	-0.26071					11	6	2	0	0	0	0.071351	1	11333	11333		64.236	46.101	1	7308100			7728	2904	4393	4428	7496	7496					-0.10900604066250708
EEEEFNTGP	9	Unmodified	_EEEEFNTGP_					0	0	0		nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	MULTI-MSMS	HCT116MG_D190212_S4	4	1051.42041015625	1	1051.42146	1050.41418	0.53918	0.00056691	0.30589	0.00032162	0.84507	0.00088852	1051.421470955224	31.054	0.41288	30.689	30.513	30.926	-0.36416					18	7	3	0	0	0	0.0036294	1	11240	11240		156.16	98.685	1	12031000			7729	2904	4393	4428	7497	7497					-0.10900604066250708
EEEEFNTGP	9	Unmodified	_EEEEFNTGP_					0	0	0		nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	MSMS	HCT116MG_D190212_S4	4	526.2146606445312	2	526.214369	1050.41418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.063	1	30.699	30.199	31.199	-0.36473								0	0	0	0.1044	1	11258	11258		54.774	22.657	1				7730	2904	4393	4428	7498	7498					-0.10900604066250708
EEEEKALSA	9	Unmodified	_EEEEKALSA_					0	0	0		ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	HCT116MG_D190212_S3	3	503.24066162109375	2	503.240386	1004.46622	0.31749	0.00015978	0.62856	0.00031632	0.94605	0.00047609	503.2407648429227	22.64	0.20807	22.621	22.491	22.699	-0.018869					5	3	2	0	0	0	0.15273	1	7984	7984		47.749	3.8904	1	2517600			7731	6201	4394	4429	7499	7499					-0.03583440652528225
EEEEPVKEA	9	Unmodified	_EEEEPVKEA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S1	1	530.245361328125	2	530.245669	1058.47678	0.29626	0.00015709	-1.521	-0.00080651	-1.2247	-0.00064941	530.2443514149387	19.887	0.41833	19.887	19.756	20.175	0					10	7	2	0	0	0	0.0201	1	6940	6940		96.367	11.095	1	6422400			7732	2442	4395	4430	7500	7500					-0.050114579980800045
EEEEPVKEA	9	Unmodified	_EEEEPVKEA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2459106445312	2	530.245669	1058.47678	0.37191	0.0001972	0.21641	0.00011475	0.58832	0.00031195	530.2456810166984	20.346	0.37043	19.967	19.813	20.183	-0.37949					18	6	4	0	0	0	0.0035894	1	7103	7103		176.43	80.142	1	40024000			7733	2442	4395	4430	7501	7501					-0.050114579980800045
EEEEPVKEA	9	Unmodified	_EEEEPVKEA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S2	2	1059.483642578125	1	1059.48406	1058.47678	0.52622	0.00055752	0.39917	0.00042292	0.92539	0.00098044	1059.4837770407105	20.358	0.21144	19.978	19.865	20.076	-0.37949					5	3	2	0	0	0	0.0034669	1	7133	7133		163.69	88.758	1	4057500			7734	2442	4395	4430	7502	7502					-0.050114579980800045
EEEEPVKEA	9	Unmodified	_EEEEPVKEA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2457275390625	2	530.245669	1058.47678	0.43979	0.0002332	-0.3272	-0.0001735	0.1126	5.9703E-05	530.2453946736447	19.717	0.57301	19.777	19.594	20.167	0.059828					23	10	4	0	0	0	0.0035136	1	6759	6759		168.54	72.253	1	61911000			7735	2442	4395	4430	7503	7503					-0.050114579980800045
EEEEPVKEA	9	Unmodified	_EEEEPVKEA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2459716796875	2	530.245669	1058.47678	0.45091	0.00023909	-0.2776	-0.00014719	0.17331	9.1897E-05	530.2454467690989	20.007	0.41578	19.813	19.632	20.048	-0.19368					20	7	4	0	0	0	0.0015154	1	6810	6810		189.73	93.447	1	22546000			7736	2442	4395	4430	7504	7504					-0.050114579980800045
EEEEPVKEA	9	Unmodified	_EEEEPVKEA_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1059.48406	1058.47678	0.6156	0.00065222	0.20663	0.00021892	0.82223	0.00087114	1059.4836772906458	19.716	0.20825	19.776	19.646	19.854	0.05983	-0.10103	-8.5244E-05	NaN	163.69	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1852000			7737	2442	4395	4430							-0.050114579980800045
EEEEQRAIA	9	Unmodified	_EEEEQRAIA_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000532383.5_1_11:10825358-10825926:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7568359375	2	537.756735	1073.49892	0.3188	0.00017144	0.46144	0.00024814	0.78024	0.00041958	537.7569498476703	20.81	0.26022	20.845	20.766	21.027	0.034473					6	4	2	0	0	0	0.26536	1	7247	7247		34.402	15.145	1	4242500			7738	2243	4396	4431	7505	7505					-0.03489233529671765
EEEESLMW	8	Unmodified	_EEEESLMW_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	526.8089599609375	2	526.71569	1051.41683	0.35755	0.00018833	0.41253	0.00021729	0.77008	0.00040561	526.7159275905889	31.019	0.30902	30.655	30.513	30.822	-0.36416					8	5	2	0	0	0	0.28275	1	11270	11270		26.341	3.1929	1	2369100			7739	674	4397	4432	7506	7506					-0.10682471932977933
EEEETCSYL	9	Unmodified	_EEEETCSYL_					0	0	0			REV__nc|ENSG00000288591|Q9Y2I9|TBC1D30	REV__nc|ENSG00000288591|Q9Y2I9|TBC1D30	MSMS	HCT116MG_D190212_S1	1	368.14605712890625	3	368.14635	1101.41722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.664	1	53.664	53.164	54.164	0								0	0	0	0.76967	1	20557	20557		1.0715	0.10919	1		+		7740	17326	4398	4433	7507	7507					-0.12943097003767434
EEEETSIKA	9	Unmodified	_EEEETSIKA_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2459716796875	2	518.245669	1034.47678	0.21931	0.00011366	1.2575	0.00065172	1.4769	0.00076537	518.2460497922364	23.266	0.36322	22.88	22.726	23.089	-0.3852					13	6	3	0	0	0	0.12421	1	8301	8301		53.404	3.8497	1	24654000			7741	6490	4399	4434	7508	7508					-0.0390745799807064
EEEEVRLV	8	Unmodified	_EEEEVRLV_					0	0	0			REV__nc|ENSG00000150403|Q6UWJ1-3|TMCO3	REV__nc|ENSG00000150403|Q6UWJ1-3|TMCO3	MULTI-SECPEP	HCT116MG_D190212_S3	3	501.2908020019531	2	501.758746	1001.50294	0.494	0.00024787	-0.52675	-0.0002643	-0.032749	-1.6432E-05	501.7585126950293	27.835	0.31178	27.647	27.517	27.829	-0.18847					8	5	2	0	0	0	0.26661	1	10070	10070		18.135	0	1	4275500	+		7742	12583	4400	4435	7509	7509					0.002248559640520398
EEEEVTKQP	9	Unmodified	_EEEEVTKQP_					0	0	0			REV__ENST00000475133.5_1_1:15892828-15894669:+|nuORF	REV__ENST00000475133.5_1_1:15892828-15894669:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	545.2023315429688	2	544.758943	1087.50333	0.39237	0.00021375	1.2317	0.000671	1.6241	0.00088475	544.7593109403878	21.942	0.20865	21.557	21.427	21.635	-0.38503					5	3	2	0	0	0	0.20553	1	7697	7697		16.942	0	1	10399000	+		7743	11574	4401	4436	7510	7510					-0.03691769106740139
EEEFFYEKA	9	Unmodified	_EEEFFYEKA_					0	0	0		nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP	nc|ENSG00000107949|Q9P287-3|BCCIP	nc|ENSG00000107949|Q9P287-3|BCCIP	MSMS	HCT116MG_D190212_S2	2	596.2642822265625	2	596.263862	1190.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.04	1	41.971	41.471	42.471	-0.068199								0	0	0	0.063593	1	15902	15902		66.457	28.483	1				7744	2138	4402	4437	7511	7511					-0.07446581101385163
EEEFFYEKA	9	Unmodified	_EEEFFYEKA_					0	0	0		nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP	nc|ENSG00000107949|Q9P287-3|BCCIP	nc|ENSG00000107949|Q9P287-3|BCCIP	MULTI-MSMS	HCT116MG_D190212_S3	3	596.26416015625	2	596.263862	1190.51317	0.66528	0.00039669	0.042191	2.5157E-05	0.70748	0.00042184	596.2637482875577	42.317	0.31266	42.013	41.832	42.144	-0.30352					13	5	3	0	0	0	0.0063854	1	15764	15764		125.53	79.508	1	18884000			7745	2138	4402	4437	7512	7512					-0.07446581101385163
EEEFFYEKA	9	Unmodified	_EEEFFYEKA_					0	0	0		nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP	nc|ENSG00000107949|Q9P287-3|BCCIP	nc|ENSG00000107949|Q9P287-3|BCCIP	MULTI-MSMS	HCT116MG_D190212_S4	4	596.264404296875	2	596.263862	1190.51317	1.0308	0.00061465	-0.20934	-0.00012482	0.8215	0.00048983	596.2636346691849	42.396	0.31128	42.02	41.839	42.15	-0.37565					13	5	3	0	0	0	0.0080847	1	15586	15586		118.07	72.047	1	15637000			7746	2138	4402	4437	7513	7513					-0.07446581101385163
EEEFFYEKA	9	Unmodified	_EEEFFYEKA_					0	0	0		nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP	nc|ENSG00000107949|Q9P287-3|BCCIP	nc|ENSG00000107949|Q9P287-3|BCCIP	MULTI-MATCH	HCT116MG_D190212_S2	2		2	596.263862	1190.51317	0.69702	0.00041561	-0.0010208	-6.0866E-07	0.696	0.000415	596.2638990464812	41.968	0.25963	41.9	41.705	41.964	-0.068199	-0.078047	6.0753E-05	NaN	125.53	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14525000			7747	2138	4402	4437							-0.07446581101385163
EEEFKKRAY	9	Unmodified	_EEEFKKRAY_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MSMS	HCT116MG_D190212_S3	3	600.140380859375	2	600.306395	1198.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.546	1	51.235	50.735	51.735	-0.31166								0	0	0	0.58443	1	19465	19465		24.674	13.85	1				7748	2399	4403	4438	7514	7514					0.006882091551233316
EEEGILVAG	9	Unmodified	_EEEGILVAG_					0	0	0		nc|ENSG00000119599|Q8WV16-2|DCAF4	nc|ENSG00000119599|Q8WV16-2|DCAF4	nc|ENSG00000119599|Q8WV16-2|DCAF4	MULTI-MSMS	HCT116MG_D190212_S3	3	916.4635620117188	1	916.462204	915.454927	0.8358	0.00076598	0.10731	9.835E-05	0.94311	0.00086433	916.4623750012305	45.12	0.26068	44.811	44.68	44.941	-0.30927					6	4	2	0	0	0	0.088989	1	16912	16912		60.39	9.5345	1	3973100			7749	9437	4404	4439	7515	7515					-0.0061821795599144025
EEEGPFHSLP	10	Unmodified	_EEEGPFHSLP_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	HCT116MG_D190212_S3	3	570.8074340820312	2	571.261653	1140.50875	0.65855	0.0003762	-0.21365	-0.00012205	0.44489	0.00025415	571.7631057450205	44.412	0.51893	44.105	43.708	44.227	-0.30759					16	9	2	0	0	0	0.15757	3	16552	16552;16553;16590		85.272	85.272	1	7377500			7750	6009	4405	4440	7516;7517;7518	7516					-0.05588045524291374
EEEGPFHSLP	10	Unmodified	_EEEGPFHSLP_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MSMS	HCT116MG_D190212_S3	3	571.6193237304688	2	571.261653	1140.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.846	1	44.537	44.037	45.037	-0.30927								0	0	0	0.77487	1	16774	16774		46.021	19.137	1				7751	6009	4405	4440	7519	7519					-0.05588045524291374
EEEGSVPETE	10	Unmodified	_EEEGSVPETE_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-SECPEP	HCT116MG_D190212_S3	3	552.7298583984375	2	553.230216	1104.44588	0.36634	0.00020267	0.93857	0.00051925	1.3049	0.00072192	553.230641913869	41.313	0.20881	41.011	40.84	41.049	-0.30185					5	3	2	0	0	0	0.29442	1	15354	15354		20.454	4.6064	1	9184800			7752	5049	4406	4441	7520	7520					-0.10216656103011701
EEEGTGVVHQA	11	Unmodified	_EEEGTGVVHQA_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	578.2772216796875	2	578.267467	1154.52038	0.30007	0.00017352	-0.42203	-0.00024405	-0.12196	-7.0526E-05	578.2672415480325	20.862	0.15607	20.897	20.818	20.975	0.034473					4	2	2	0	0	0	0.17741	1	7232	7232		78.06	38.111	1	5045900			7753	6058	4407	4442	7521	7521					-0.050698485009206706
EEEGTGVVHQA	11	Unmodified	_EEEGTGVVHQA_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S4	4	578.2674560546875	2	578.267467	1154.52038	0.3509	0.00020291	-0.56656	-0.00032762	-0.21566	-0.00012471	578.2670162152627	21.099	0.15589	20.889	20.811	20.967	-0.20959					4	2	2	0	0	0	0.59843	1	7293	7293		35.612	14.075	1	1439800			7754	6058	4407	4442	7522	7522					-0.050698485009206706
EEEKAAATP	9	Unmodified	_EEEKAAATP_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2300109863281	2	473.229822	944.445091	0.26329	0.0001246	-0.20297	-9.6052E-05	0.060317	2.8544E-05	473.2297106522886	17.196	0.57413	16.847	16.665	17.239	-0.34933					14	10	2	0	0	0	0.11023	1	5865	5865		56.177	10.156	1	8090700			7755	4827	4408	4443	7523	7523					-0.02935405961397919
EEEKAAATP	9	Unmodified	_EEEKAAATP_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2286376953125	2	473.229822	944.445091	0.1319	6.2421E-05	-0.44908	-0.00021252	-0.31717	-0.00015009	473.2296094108467	16.23	0.41586	16.315	16.081	16.497	0.085424					12	7	2	0	0	0	0.061422	1	5359	5359		69.105	4.8686	1	2885300			7756	4827	4408	4443	7524	7524					-0.02935405961397919
EEEKAVAVP	9	Unmodified	_EEEKAVAVP_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MSMS	HCT116MG_D190212_S2	2	486.255859375	2	486.25584	970.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.934	1	28.618	28.118	29.118	-0.31613								0	0	0	0.16454	1	10577	10577		49.933	6.965	1				7757	6305	4409	4444	7525	7525					0.010697574523760522
EEEKAVAVP	9	Unmodified	_EEEKAVAVP_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S3	3	486.25567626953125	2	486.25584	970.497126	0.32762	0.00015931	-0.099186	-4.823E-05	0.22844	0.00011108	486.2556614644021	28.773	1.0415	28.551	28.317	29.359	-0.22195					31	19	2	0	0	0	0.027442	2	10408	10408;10648		88.954	20.873	1	16743000			7758	6305	4409	4444	7526;7527	7526					0.010697574523760522
EEEKKNLSA	9	Unmodified	_EEEKKNLSA_					0	0	0		TTK|p.L364Pfs*8|1|0.04|ENSG00000112742|chr6:80014568-80014569|-/CCATAAATAGTAG|frameshift_variant;nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK	TTK|p.L364Pfs*8|1|0.04|ENSG00000112742|chr6:80014568-80014569|-/CCATAAATAGTAG|frameshift_variant	TTK|p.L364Pfs*8|1|0.04|ENSG00000112742|chr6:80014568-80014569|-/CCATAAATAGTAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	524.2694091796875	2	524.269478	1046.5244	0.35382	0.0001855	-0.035763	-1.8749E-05	0.31806	0.00016675	524.2693911873298	16.03	0.26053	16.03	15.9	16.161	0					7	4	2	0	0	0	0.01386	1	5369	5369		103.82	29.624	1	12236000			7759	2358	4410	4445	7528	7528					0.0030024099276033667
EEEKKNLSA	9	Unmodified	_EEEKKNLSA_					0	0	0		TTK|p.L364Pfs*8|1|0.04|ENSG00000112742|chr6:80014568-80014569|-/CCATAAATAGTAG|frameshift_variant;nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK	TTK|p.L364Pfs*8|1|0.04|ENSG00000112742|chr6:80014568-80014569|-/CCATAAATAGTAG|frameshift_variant	TTK|p.L364Pfs*8|1|0.04|ENSG00000112742|chr6:80014568-80014569|-/CCATAAATAGTAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	524.26953125	2	524.269478	1046.5244	0.33752	0.00017695	-0.20439	-0.00010716	0.13313	6.9794E-05	524.269376509794	16.313	0.46948	15.972	15.786	16.256	-0.34183					20	8	3	0	0	0	0.022505	1	5489	5489		93.938	27.481	1	71567000			7760	2358	4410	4445	7529	7529					0.0030024099276033667
EEEKLQAAF	9	Unmodified	_EEEKLQAAF_					0	0	0		COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant;ENSG00000145781|ENST00000274458|COMMD10	COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant	COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7664794921875	2	532.766571	1063.51859	0.40672	0.00021668	-0.21781	-0.00011604	0.1889	0.00010064	532.7663232596952	38.472	0.25916	38.17	37.989	38.248	-0.30137					8	4	2	0	0	0	0.071914	1	14239	14239		63.961	32.692	1	9371000			7761	533	4411	4446	7530	7530					-0.010628575189230105
EEEKLQAAF	9	Unmodified	_EEEKLQAAF_					0	0	0		COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant;ENSG00000145781|ENST00000274458|COMMD10	COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant	COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	532.7670288085938	2	532.766571	1063.51859	0.30082	0.00016027	0.73222	0.0003901	1.033	0.00055037	532.7667548786377	38.55	0.23928	38.168	38.096	38.336	-0.38163					6	4	2	0	0	0	0.26536	1	14157	14157		34.402	15.145	1	3089400			7762	533	4411	4446	7531	7531					-0.010628575189230105
EEEKLQAAF	9	Unmodified	_EEEKLQAAF_					0	0	0		COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant;ENSG00000145781|ENST00000274458|COMMD10	COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant	COMMD10|p.R102Hfs*8|1|0.07|ENSG00000145781|chr5:116092604-116092605|-/CATACTG|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	532.766571	1063.51859	0.30026	0.00015997	-0.0010374	-5.5267E-07	0.29922	0.00015941	532.7665149482422	38.233	0.25893	38.14	37.96	38.219	-0.09301	-0.019211	-7.0722E-05	NaN	63.961	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26411000			7763	533	4411	4446							-0.010628575189230105
EEEKNYALP	9	Unmodified	_EEEKNYALP_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	546.7642822265625	2	546.764029	1091.5135	0.39901	0.00021816	-0.071501	-3.9094E-05	0.3275	0.00017907	546.7638822768324	34.284	0.88387	33.99	33.715	34.599	-0.29419					28	16	3	0	0	0	0.027442	1	12590	12590		88.954	56.648	1	6437100			7764	3729	4412	4447	7532	7532					-0.02859161381525155
EEEKNYALP	9	Unmodified	_EEEKNYALP_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	546.764404296875	2	546.764029	1091.5135	0.47554	0.00026001	-0.073018	-3.9924E-05	0.40253	0.00022009	546.763999138234	34.392	0.81885	34.006	33.724	34.543	-0.38558					22	15	2	0	0	0	0.12994	1	12521	12521		52.268	15.762	1	3386900			7765	3729	4412	4447	7533	7533					-0.02859161381525155
EEEKNYALP	9	Unmodified	_EEEKNYALP_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	546.764029	1091.5135	0.48631	0.0002659	-0.24233	-0.0001325	0.24398	0.0001334	546.763845161049	34.166	0.62234	33.991	33.709	34.331	-0.17511	-0.004897	-0.00015714	NaN	88.954	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11058000			7766	3729	4412	4447							-0.02859161381525155
EEEKRTLIA	9	Unmodified	_EEEKRTLIA_					0	0	0		nc|ENSG00000157613|Q96BA8-2|CREB3L1;nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000157613|ENST00000621158|CREB3L1;ENSG00000182158|ENST00000330387|CREB3L2	nc|ENSG00000157613|Q96BA8-2|CREB3L1	nc|ENSG00000157613|Q96BA8-2|CREB3L1	MULTI-MSMS	HCT116MG_D190212_S2	2	544.80029296875	2	544.800946	1087.58734	0.59993	0.00032684	-0.2969	-0.00016175	0.30303	0.00016509	544.8006008949069	26.272	0.20624	25.91	25.818	26.024	-0.36164					5	3	2	0	0	0	0.35842	1	9530	9530		24.991	3.454	1	7220500			7767	4336	4413	4448	7534	7534					0.04704806780819126
EEEKRTLIA	9	Unmodified	_EEEKRTLIA_					0	0	0		nc|ENSG00000157613|Q96BA8-2|CREB3L1;nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000157613|ENST00000621158|CREB3L1;ENSG00000182158|ENST00000330387|CREB3L2	nc|ENSG00000157613|Q96BA8-2|CREB3L1	nc|ENSG00000157613|Q96BA8-2|CREB3L1	MULTI-MSMS	HCT116MG_D190212_S3	3	544.8011474609375	2	544.800946	1087.58734	0.5625	0.00030645	0.47836	0.00026061	1.0409	0.00056706	544.8012193022805	25.752	0.20852	25.624	25.546	25.755	-0.12795					6	3	2	0	0	0	0.082877	2	9240	9198;9240		61.602	8.1979	1	3930600			7768	4336	4413	4448	7535;7536	7536					0.04704806780819126
EEEKSGLGA	9	Unmodified	_EEEKSGLGA_					0	0	0		nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000377449.1_9:69261316-69262487:-|nuORF;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000136682|ENST00000259199|ZNG1B	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	MULTI-MSMS	HCT116MG_D190212_S1	1	460.22210693359375	2	460.221997	918.429441	-0.018283	-8.4141E-06	-0.27158	-0.00012499	-0.28986	-0.0001334	460.2220850171011	19.463	0.67754	19.463	19.131	19.809	0					25	12	3	0	0	0	0.027442	1	6745	6745		88.954	17.032	1	19325000			7769	9551	4414	4449	7537	7537					-0.033036924784141775
EEEKSGLGA	9	Unmodified	_EEEKSGLGA_					0	0	0		nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000377449.1_9:69261316-69262487:-|nuORF;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000136682|ENST00000259199|ZNG1B	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	MULTI-MSMS	HCT116MG_D190212_S1	1	919.43603515625	1	919.436717	918.429441	0.77744	0.00071481	-0.3922	-0.00036061	0.38524	0.0003542	919.4363405088452	19.417	0.26015	19.417	19.235	19.495	0					5	4	2	0	0	0	0.0046822	1	6757	6757		140.63	3.2093	1	3138700			7770	9551	4414	4449	7538	7538					-0.033036924784141775
EEEKSGLGA	9	Unmodified	_EEEKSGLGA_					0	0	0		nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000377449.1_9:69261316-69262487:-|nuORF;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000136682|ENST00000259199|ZNG1B	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	MULTI-MSMS	HCT116MG_D190212_S2	2	460.2219543457031	2	460.221997	918.429441	0.11297	5.1993E-05	0.092392	4.2521E-05	0.20537	9.4514E-05	460.2219841576305	19.959	0.57102	19.584	19.298	19.869	-0.37503					29	10	4	0	0	0	0.027442	1	6934	6934		88.954	7.0637	1	191270000			7771	9551	4414	4449	7539	7539					-0.033036924784141775
EEEKSGLGA	9	Unmodified	_EEEKSGLGA_					0	0	0		nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000377449.1_9:69261316-69262487:-|nuORF;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000136682|ENST00000259199|ZNG1B	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	MULTI-MSMS	HCT116MG_D190212_S2	2	919.4373779296875	1	919.436717	918.429441	0.7121	0.00065473	0.0014002	1.2874E-06	0.7135	0.00065602	919.4366062522714	19.959	0.46671	19.584	19.403	19.869	-0.37503					16	8	3	0	0	0	0.0059958	1	6953	6953		128.93	14.731	1	56759000			7772	9551	4414	4449	7540	7540					-0.033036924784141775
EEEKSGLGA	9	Unmodified	_EEEKSGLGA_					0	0	0		nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000377449.1_9:69261316-69262487:-|nuORF;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000136682|ENST00000259199|ZNG1B	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	MULTI-MSMS	HCT116MG_D190212_S3	3	460.22186279296875	2	460.221997	918.429441	0.38941	0.00017922	1.3086	0.00060223	1.698	0.00078144	460.22183440991176	19.092	0.72849	19.161	18.823	19.551	0.069159					37	13	4	0	0	0	0.049545	1	6529	6529		74.929	16.25	1	55004000			7773	9551	4414	4449	7541	7541					-0.033036924784141775
EEEKSGLGA	9	Unmodified	_EEEKSGLGA_					0	0	0		nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000377449.1_9:69261316-69262487:-|nuORF;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000136682|ENST00000259199|ZNG1B	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	MULTI-MSMS	HCT116MG_D190212_S3	3	919.4373779296875	1	919.436717	918.429441	0.7461	0.00068599	1.8912	0.0017389	2.6373	0.0024249	919.4363292212931	19.096	0.46807	19.165	18.927	19.395	0.069159					17	8	3	0	0	0	0.0038512	1	6548	6548		152.89	15.462	1	8884400			7774	9551	4414	4449	7542	7542					-0.033036924784141775
EEEKVLGETA	10	Unmodified	_EEEKVLGETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-SECPEP	HCT116MG_D190212_S1	1	553.258544921875	2	552.774593	1103.53463	0.71128	0.00039318	0.72614	0.00040139	1.4374	0.00079457	553.275950663484	28.319	0.26221	28.319	28.113	28.375	0					5	4	2	0	0	0	0.2501	1	10315	10315		36.506	7.4246	1	3975700			7775	3119	4415	4450	7543	7543					-0.012991960726367324
EEEKVLGETA	10	Unmodified	_EEEKVLGETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7748413085938	2	552.774593	1103.53463	0.65023	0.00035943	-0.21539	-0.00011906	0.43484	0.00024037	552.7745801815994	28.721	0.2602	28.515	28.333	28.593	-0.20593					11	4	4	0	0	0	0.031798	1	10401	10401		100.71	49.079	1	23326000			7776	3119	4415	4450	7544	7544					-0.012991960726367324
EEEKVLGETA	10	Unmodified	_EEEKVLGETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	552.7745971679688	2	552.774593	1103.53463	0.44992	0.0002487	0.18586	0.00010274	0.63577	0.00035144	552.7745042683983	28.837	0.25965	28.496	28.366	28.626	-0.34059					9	4	3	0	0	0	0.066546	1	10400	10400		80.676	34.976	1	12280000			7777	3119	4415	4450	7545	7545					-0.012991960726367324
EEELGERGNEE	11	Unmodified	_EEELGERGNEE_					0	0	0		ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENST00000420752.1_1_10:50980319-50981214:+|nuORF	MSMS	HCT116MG_D190212_S1	1	430.8529357910156	3	430.852994	1289.53715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.045	1	14.045	13.545	14.545	0								0	0	0	0.96208	1	4578	4578		0	0	1				7778	7780	4416	4451	7546	7546					-0.09603392405597333
EEELTKKLI	9	Unmodified	_EEELTKKLI_					0	0	0			REV__SYNDIG1-MYH9|1|fusion	REV__SYNDIG1-MYH9|1|fusion	MULTI-MSMS	HCT116MG_D190212_S1	1	1102.6390380859375	1	1102.63542	1101.62814	0.70831	0.00078101	3.3517	0.0036957	4.06	0.0044767	1102.6404081346777	35.397	0.20804	35.397	35.267	35.475	0					5	3	2	0	0	0	0.60654	1	13176	13176		15.847	9.6414	1	16465000	+		7779	11078	4417	4452	7547	7547					0.08139148100440252
EEELTKPR	8	Unmodified	_EEELTKPR_					0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	MULTI-SECPEP	HCT116MG_D190212_S1	1	501.7518615722656	2	501.266739	1000.51892	0.46035	0.00023076	-4.2909	-0.0021509	-3.8306	-0.0019202	501.2662800534644	18.014	0.2607	18.014	17.88	18.141	0					6	4	2	0	0	0	0.31097	1	6126	6126		11.64	9.3376	1	1184600			7780	6311	4418	4453	7548	7548					0.01868562200957058
EEELTTVEVP	10	Unmodified	_EEELTTVEVP_					0	0	0			REV__ENST00000354436.6_2_16:69599915-69660315:+|nuORF	REV__ENST00000354436.6_2_16:69599915-69660315:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	573.78466796875	2	573.282251	1144.54995	0.53991	0.00030952	2.0268	0.0011619	2.5667	0.0014714	573.7849969913245	37.357	0.26017	37.055	36.925	37.185	-0.30137					7	4	2	0	0	0	0.75427	1	13872	13872		15.847	0.5987	1	4610100	+		7781	15030	4419	4454	7549	7549					-0.016543292754931826
EEEMKGIAA	9	Unmodified	_EEEMKGIAA_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	489.2337341308594	2	489.23405	976.453547	0.31711	0.00015514	-0.17229	-8.4292E-05	0.14481	7.0847E-05	489.23380770101267	28.825	0.26022	28.603	28.473	28.733	-0.22195					7	4	2	0	0	0	0.061422	1	10466	10466		69.105	31.131	1	5334400			7782	194	4420	4455	7550	7550					-0.035621753164150505
EEEMKGIAA	9	Unmodified	_EEEMKGIAA_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MSMS	HCT116MG_D190212_S4	4	489.23419189453125	2	489.23405	976.453547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.035	1	28.695	28.195	29.195	-0.34059								0	0	0	0.067861	1	10468	10468		65.235	31.133	1				7783	194	4420	4455	7551	7551					-0.035621753164150505
EEENFKKP	8	Unmodified	_EEENFKKP_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	HCT116MG_D190212_S3	3	510.7535705566406	2	510.753464	1019.49238	0.04122	2.1053E-05	-0.72274	-0.00036914	-0.68152	-0.00034809	510.75342992569705	20.587	0.6247	20.621	20.194	20.818	0.034473					20	11	2	0	0	0	0.15825	1	7130	7130		81.89	29.622	1	3785100			7784	2808	4421	4456	7552	7552					-0.016591266903787982
EEEPPQNMKP	10	Unmodified	_EEEPPQNMKP_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	HCT116MG_D190212_S3	3	599.7739868164062	2	599.774071	1197.53359	0.68422	0.00041038	-0.58147	-0.00034875	0.10275	6.1626E-05	599.77370321754	25.454	1.563	25.348	24.735	26.298	-0.10618					41	29	2	0	0	0	0.16489	1	9074	9074		62.573	28.47	1	4018600			7785	766	4422	4457	7553	7553					-0.057277337132290995
EEEPPQNMKP	10	Unmodified	_EEEPPQNMKP_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MATCH	HCT116MG_D190212_S2	2		2	599.774071	1197.53359	0.67573	0.00040529	0.1942	0.00011647	0.86993	0.00052176	599.7738048607674	25.791	0.98836	25.422	24.666	25.654	-0.36914	0.037261	0.00056706	NaN	62.573	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7285400			7786	766	4422	4457							-0.057277337132290995
EEEPPTVTEP	10	Unmodified	_EEEPPTVTEP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2587280273438	2	564.258776	1126.503	0.67238	0.00037939	-0.0242	-1.3655E-05	0.64818	0.00036574	564.2585695740713	31.453	0.72393	31.204	30.838	31.561	-0.24883					19	13	2	0	0	0	0.13038	1	11647	11647		68.081	30.107	1	9052100			7787	3119	4423	4458	7554	7554					-0.05519188826588106
EEEPPTVTEP	10	Unmodified	_EEEPPTVTEP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2587280273438	2	564.258776	1126.503	0.35517	0.00020041	-0.18194	-0.00010266	0.17323	9.7744E-05	564.2585655970148	31.605	0.9375	31.335	31.012	31.95	-0.27028					35	17	3	0	0	0	0.02258	1	11523	11523		115.69	63.424	1	13192000			7788	3119	4423	4458	7555	7555					-0.05519188826588106
EEEPPTVTEP	10	Unmodified	_EEEPPTVTEP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	564.259033203125	2	564.258776	1126.503	0.2281	0.00012871	-0.024803	-1.3995E-05	0.2033	0.00011471	564.2586406858112	31.68	1.0904	31.309	30.971	32.062	-0.37026					31	20	2	0	0	0	0.029196	3	11462	11462;11648;11715		103.75	57.727	1	7537000			7789	3119	4423	4458	7556;7557;7558	7556					-0.05519188826588106
EEEQEQKYVEY	11	Unmodified	_EEEQEQKYVEY_					0	0	0			REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MSMS	HCT116MG_D190212_S1	1	737.3245239257812	2	737.322636	1472.63072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.232	1	20.232	19.732	20.732	0								0	0	0	0.95581	1	7060	7060		3.2813	0	1		+		7790	10665	4424	4459	7559	7559					-0.08669093023195273
EEEQPQAAQ	9	Unmodified	_EEEQPQAAQ_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7293090820312	2	515.22781	1028.44107	0.26414	0.00013609	2.5127	0.0012946	2.7768	0.0014307	515.2298155779226	32.571	0.6251	32.291	31.888	32.513	-0.27995					25	11	3	0	0	0	0.51829	1	11981	11981		15.847	1.2655	1	9400100			7791	2974	4425	4460	7560	7560					-0.072014954550923
EEERALFY	8	Unmodified	_EEERALFY_					0	0	0		ENSG00000198873|ENST00000392870|GRK5;GRK5|p.A292V|2|0.26|ENSG00000198873|chr10:119436787-119436787|C/T|missense_variant	ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	MULTI-MSMS	HCT116MG_D190212_S3	3	528.754150390625	2	528.753464	1055.49238	0.32	0.0001692	0.01005	5.3138E-06	0.33005	0.00017452	528.7535728610179	41.797	0.27903	41.494	41.45	41.729	-0.30257					7	5	2	0	0	0	0.53394	1	15585	15585		38.151	0.17718	1	3725000			7792	6290	4426	4461	7561	7561					-0.03315126690381476
EEERKGMVA	9	Unmodified	_EEERKGMVA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MSMS	HCT116MG_D190212_S1	1	524.7584228515625	2	524.758223	1047.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.23	1	18.23	17.73	18.73	0								0	0	0	0.050056	1	6253	6253		70.332	28.237	1				7793	2855	4427	4462	7562	7562					-0.019956816764988616
EEERKGMVA	9	Unmodified	_EEERKGMVA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MSMS	HCT116MG_D190212_S2	2	524.7579956054688	2	524.758223	1047.50189	0.10235	5.3707E-05	0.22066	0.00011579	0.32301	0.0001695	524.7582661803165	18.819	0.46945	18.456	18.321	18.79	-0.36325					15	8	3	0	0	0	0.0068427	1	6505	6505		121.53	69.266	1	47501000			7794	2855	4427	4462	7563	7563					-0.019956816764988616
EEERKGMVA	9	Unmodified	_EEERKGMVA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MSMS	HCT116MG_D190212_S3	3	524.758056640625	2	524.758223	1047.50189	0.044045	2.3113E-05	0.20692	0.00010858	0.25097	0.0001317	524.7583927283913	17.582	0.41637	17.664	17.534	17.95	0.081358					10	7	2	0	0	0	0.064006	1	5924	5924		67.838	33.436	1	4181400			7795	2855	4427	4462	7564	7564					-0.019956816764988616
EEERKGMVAA	10	Unmodified	_EEERKGMVAA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MSMS	HCT116MG_D190212_S2	2	560.277099609375	2	560.27678	1118.53901	0.36964	0.0002071	0.0090909	5.0934E-06	0.37873	0.0002122	560.2767606144915	19.857	0.20715	19.482	19.351	19.558	-0.37503					6	3	2	0	0	0	0.025294	1	6914	6914		110.79	61.238	1	22924000			7796	2855	4428	4463	7565	7565					-0.015520101307174627
EEERKGMVAA	10	Unmodified	_EEERKGMVAA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MSMS	HCT116MG_D190212_S3	3	560.2766723632812	2	560.27678	1118.53901	0.37294	0.00020895	-0.91315	-0.00051162	-0.54021	-0.00030267	560.2760480235996	18.723	0.36441	18.792	18.667	19.031	0.069159					12	6	3	0	0	0	0.021392	1	6383	6383		117.84	56.236	1	10614000			7797	2855	4428	4463	7566	7566					-0.015520101307174627
EEERKGMVAA	10	Unmodified	_EEERKGMVAA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	560.27678	1118.53901	0.1647	9.2275E-05	-0.15021	-8.4162E-05	0.014482	8.1137E-06	560.2764789164255	19.114	0.2599	18.927	18.765	19.025	-0.18674	0.067594	0.00027198	NaN	117.84	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1421200			7798	2855	4428	4463							-0.015520101307174627
EEERKSWMA	9	Unmodified	_EEERKSWMA_					0	0	0		SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant;SH3BP2|p.V381Wfs*8|1|0.47|ENSG00000087266|chr4:2830041-2830041|C/-|frameshift_variant;SH3BP2|p.P368Qfs*21|1|0.28|ENSG00000087266|chr4:2830004-2830004|C/-|frameshift_variant;SH3BP2|p.V381Rfs*14|1|0.18|ENSG00000087266|chr4:2830040-2830041|-/C|frameshift_variant;ENST00000515737.5_1_4:2825262-2835558:+|nuORF;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2;ENST00000513020.5_1_4:2824751-2826924:+|nuORF;SH3BP2|p.P238Rfs*40|1|0.37|ENSG00000087266|chr4:2829615-2829615|C/-|frameshift_variant	SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant	SH3BP2|p.R342Pfs*7|1|0.24|ENSG00000087266|chr4:2829924-2829925|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	583.2694702148438	2	583.268955	1164.52336	0.59225	0.00034544	0.18319	0.00010685	0.77544	0.00045229	583.2691217067295	28.565	0.31247	28.359	28.177	28.489	-0.20593					7	5	2	0	0	0	0.41788	1	10368	10368		22.736	7.898	1	6048400			7799	1482	4429	4464	7567	7567					-0.0523229664779592
EEERLQAIAA	10	Unmodified	_EEERLQAIAA_					0	0	0		SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant;ENSG00000165684|ENST00000684778|SNAPC4;SNAPC4|p.P406Rfs*46|1|0.23|ENSG00000165684|chr9:136387755-136387755|G/-|frameshift_variant;SNAPC4|p.P703Qfs*38|1|0.25|ENSG00000165684|chr9:136382033-136382033|G/-|frameshift_variant	SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant	SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	564.85888671875	2	565.296027	1128.5775	0.47019	0.0002658	0.20703	0.00011703	0.67722	0.00038283	565.2960986829762	33.464	0.25463	33.174	33.049	33.304	-0.29013					6	4	2	0	0	0	0.42802	1	12301	12301		40.239	3.733	1	9527800			7800	4790	4430	4465	7568	7568					0.01835618775430703
EEERLRQEA	9	Unmodified	_EEERLRQEA_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	HCT116MG_D190212_S3	3	580.2890625	2	580.288734	1158.56291	0.10978	6.3704E-05	0.063649	3.6935E-05	0.17343	0.00010064	580.2887906944369	17.53	0.20802	17.611	17.534	17.742	0.081358					8	3	3	0	0	0	0.068828	1	5923	5923		65.474	15.919	1	4605100			7801	2119	4431	4466	7569	7569					-0.010024533727118978
EEERNYHIFYQ	11	Unmodified	_EEERNYHIFYQ_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MSMS	HCT116MG_D190212_S1	1	764.3436279296875	2	764.34678	1526.67901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.821	1	38.821	38.321	39.321	0								0	0	0	0.95636	1	14546	14546		2.9952	0.49676	1				7802	6153	4432	4467	7570	7570					-0.06326554592669709
EEERQILLA	9	Unmodified	_EEERQILLA_					0	0	0		ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3|CECR2;CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant;nc|ENSG00000099954|Q9BXF3-2|CECR2	ENSG00000099954|ENST00000262608|CECR2	ENSG00000099954|ENST00000262608|CECR2	MULTI-MSMS	HCT116MG_D190212_S4	4	550.8014526367188	2	550.800946	1099.58734	0.31418	0.00017305	-0.081675	-4.4986E-05	0.23251	0.00012806	550.8011651506115	38.097	0.12702	37.714	37.633	37.76	-0.38283					5	3	2	0	0	0	0.34272	1	13965	13965		26.268	0	1	2415700			7803	1649	4433	4468	7571	7571					0.04152806780825813
EEERQILLA	9	Unmodified	_EEERQILLA_					0	0	0		ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3|CECR2;CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant;nc|ENSG00000099954|Q9BXF3-2|CECR2	ENSG00000099954|ENST00000262608|CECR2	ENSG00000099954|ENST00000262608|CECR2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	550.800946	1099.58734	0.1708	9.4079E-05	0.34005	0.0001873	0.51085	0.00028138	550.8011667226384	37.787	0.20554	37.687	37.541	37.746	-0.099781	-0.013669	0.00030226	NaN	26.268	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11185000			7804	1649	4433	4468							0.04152806780825813
EEERRINHTA	10	Unmodified	_EEERRINHTA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;CLCN7|p.F186Cfs*6|1|0.07|ENSG00000103249|chr16:1460454-1460457|GAAG/-|frameshift_variant	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S2	2	627.813232421875	2	627.812907	1253.61126	0.37396	0.00023478	0.11316	7.1046E-05	0.48713	0.00030582	627.8129999983179	14.433	0.34637	14.114	14.002	14.349	-0.31952					14	6	3	0	0	0	0.87609	1	4746	4746		4.5289	1.2476	1	28899000			7805	1884	4434	4469	7572	7572					-0.0053995973280507314
EEERRINHTA	10	Unmodified	_EEERRINHTA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;CLCN7|p.F186Cfs*6|1|0.07|ENSG00000103249|chr16:1460454-1460457|GAAG/-|frameshift_variant	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S2	2	418.877685546875	3	418.877697	1253.61126	-0.11805	-4.9449E-05	0.21904	9.175E-05	0.10099	4.2301E-05	418.8777183099033	14.433	0.29418	14.114	14.002	14.296	-0.31952					7	5	2	0	0	0	0.46329	1	4747	4747		37.771	26.14	1	10905000			7806	1884	4434	4469	7573	7573					-0.0053995973280507314
EEERRQEGPA	10	Unmodified	_EEERRQEGPA_					0	0	0			REV__ENST00000249861.8_1_15:71184746-71185064:-|nuORF	REV__ENST00000249861.8_1_15:71184746-71185064:-|nuORF	MSMS	HCT116MG_D190212_S3	3	600.7848510742188	2	600.783815	1199.55308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.496	1	46.184	45.684	46.684	-0.31237								0	0	0	0.91906	1	17435	17435		11.64	0.81637	1		+		7807	14582	4435	4470	7574	7574					-0.03871641378077584
EEERTTLLP	9	Unmodified	_EEERTTLLP_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	MULTI-MSMS	HCT116MG_D190212_S3	3	544.28564453125	2	544.285128	1086.5557	0.65635	0.00035724	0.16468	8.9635E-05	0.82103	0.00044688	544.7866241132522	40.855	0.31254	40.554	40.371	40.684	-0.30161					8	5	2	0	0	0	0.21258	1	15189	15189		39.95	5.548	1	6925500			7808	3946	4436	4471	7575	7575					0.015888140268771167
EEERTTLLP	9	Unmodified	_EEERTTLLP_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	MULTI-MSMS	HCT116MG_D190212_S4	4	544.28515625	2	544.285128	1086.5557	0.51982	0.00028293	-0.20177	-0.00010982	0.31805	0.00017311	544.2847858096491	40.944	0.25669	40.567	40.419	40.676	-0.37732					6	4	2	0	0	0	0.16306	1	15067	15067		45.7	9.1934	1	2544500			7809	3946	4436	4471	7576	7576					0.015888140268771167
EEERTTLLP	9	Unmodified	_EEERTTLLP_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	544.285128	1086.5557	0.6709	0.00036516	-1.0028	-0.00054578	-0.33185	-0.00018062	544.2850264990467	40.572	0.30925	40.502	40.313	40.622	-0.069626	-0.038842	-0.001165	NaN	45.7	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9073700			7810	3946	4436	4471							0.015888140268771167
EEERVQIVSA	10	Unmodified	_EEERVQIVSA_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	HCT116MG_D190212_S3	3	580.301513671875	2	580.30131	1158.58807	0.30911	0.00017938	0.11534	6.6935E-05	0.42446	0.00024631	580.3014089449903	32.123	0.25986	31.845	31.734	31.994	-0.27841					6	4	2	0	0	0	0.73016	1	11789	11789		20.415	1.0526	1	4111400			7811	2833	4437	4472	7577	7577					0.0151160142986555
EEERWEWSP	9	Unmodified	_EEERWEWSP_					0	0	0		ENSG00000167565|ENST00000322354|SERTAD3	ENSG00000167565|ENST00000322354|SERTAD3	ENSG00000167565|ENST00000322354|SERTAD3	MULTI-MSMS	HCT116MG_D190212_S2	2	624.27001953125	2	624.27001	1246.52547	0.84004	0.00052441	-0.071306	-4.4514E-05	0.76873	0.0004799	624.269782334043	46.628	0.51505	46.517	46.214	46.729	-0.11122					15	9	3	0	0	0	0.24973	1	17752	17752		36.044	11.053	1	29616000			7812	4933	4438	4473	7578	7578					-0.0879354463834261
EEERWEWSP	9	Unmodified	_EEERWEWSP_					0	0	0		ENSG00000167565|ENST00000322354|SERTAD3	ENSG00000167565|ENST00000322354|SERTAD3	ENSG00000167565|ENST00000322354|SERTAD3	MULTI-MSMS	HCT116MG_D190212_S3	3	624.7711181640625	2	624.27001	1246.52547	0.52143	0.00032552	0.10331	6.4496E-05	0.62475	0.00039001	624.2697088084316	46.83	0.46916	46.516	46.229	46.698	-0.31405					18	8	3	0	0	0	0.034046	1	17564	17564		82.529	47.597	1	9658500			7813	4933	4438	4473	7579	7579					-0.0879354463834261
EEERWEWSP	9	Unmodified	_EEERWEWSP_					0	0	0		ENSG00000167565|ENST00000322354|SERTAD3	ENSG00000167565|ENST00000322354|SERTAD3	ENSG00000167565|ENST00000322354|SERTAD3	MULTI-MSMS	HCT116MG_D190212_S4	4	624.2703247070312	2	624.27001	1246.52547	0.465	0.00029029	0.14604	9.1171E-05	0.61105	0.00038146	624.270064422906	46.967	0.31124	46.596	46.381	46.693	-0.37038					8	5	2	0	0	0	0.053544	1	17372	17372		72.968	40.662	1	2995600			7814	4933	4438	4473	7580	7580					-0.0879354463834261
EEERWYLAA	9	Unmodified	_EEERWYLAA_					0	0	0		ENST00000488876.5_1_17:37814522-37819158:+|nuORF;CISD3-STARD3|3|fusion;CISD3-STARD3|2|fusion;nc|ENSG00000131748|Q14849-2|STARD3;ENSG00000131748|ENST00000336308|STARD3	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	MSMS	HCT116MG_D190212_S3	3	583.7767944335938	2	583.77747	1165.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.357	1	46.044	45.544	46.544	-0.31237								0	0	0	0.040848	1	17379	17379		72.968	40.182	1				7815	465	4439	4474	7581	7581					-0.03576052770313254
EEESLKEQY	9	Unmodified	_EEESLKEQY_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MSMS	HCT116MG_D190212_S2	2	577.7637939453125	2	577.764226	1153.5139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.42	1	39.343	38.843	39.843	-0.077835								0	0	0	0.71969	1	14836	14836		18.135	1.0221	1		+		7816	13552	4440	4475	7582	7582					-0.0567178645230797
EEETPRPEP	9	Unmodified	_EEETPRPEP_					0	0	0			REV__ENSG00000179588|ENST00000319555|ZFPM1	REV__ENSG00000179588|ENST00000319555|ZFPM1	MSMS	HCT116MG_D190212_S3	3	542.25146484375	2	542.251286	1082.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.639	1	44.332	43.832	44.832	-0.30759								0	0	0	0.76575	1	16693	16693		15.847	0	1		+		7817	13643	4441	4476	7583	7583					-0.04992635903954579
EEETRRLQ	8	Unmodified	_EEETRRLQ_					0	0	0		ENSG00000168517|ENST00000589230|HEXIM2	ENSG00000168517|ENST00000589230|HEXIM2	ENSG00000168517|ENST00000589230|HEXIM2	MULTI-MSMS	HCT116MG_D190212_S3	3	530.7728881835938	2	530.772719	1059.53089	0.45142	0.0002396	0.82768	0.00043931	1.2791	0.00067891	530.7725372054077	19.69	0.20823	19.749	19.594	19.802	0.059828					6	3	2	0	0	0	0.62424	1	6786	6786		30.225	5.5509	1	1696000			7818	5016	4442	4477	7584	7584					0.003501789441543224
EEETSIKAA	9	Unmodified	_EEETSIKAA_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000481025.1_1_6:33255909-33256589:-|nuORF;ENST00000477718.5_1_6:33256133-33256956:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-SECPEP	HCT116MG_D190212_S4	4	489.71331787109375	2	489.242929	976.471305	-0.0030453	-1.4899E-06	1.3253	0.0006484	1.3223	0.00064691	489.24357124828254	21.047	0.2074	20.837	20.708	20.915	-0.20959					5	3	2	0	0	0	0.21474	1	7218	7218		29.082	5.061	1	1564000			7819	6490	4443	4478	7585	7585					-0.01787136789903343
EEEVFPLAM	9	Unmodified	_EEEVFPLAM_					0	0	0		ENSG00000118971|ENST00000261254|CCND2;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000118971|P30279-2|CCND2;ENSG00000112576|ENST00000372991|CCND3;ENSG00000110092|ENST00000227507|CCND1	ENSG00000118971|ENST00000261254|CCND2	ENSG00000118971|ENST00000261254|CCND2	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7526245117188	2	532.752075	1063.4896	0.66776	0.00035575	0.013308	7.0899E-06	0.68107	0.00036284	532.7520070518791	57.295	0.20916	57.016	56.937	57.147	-0.27913					7	3	3	0	0	0	0.043314	1	21793	21793		77.984	45.867	1	2210300			7820	2621	4444	4479	7586	7586					-0.039607181395467705
EEEVFPLAM	9	Unmodified	_EEEVFPLAM_					0	0	0		ENSG00000118971|ENST00000261254|CCND2;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000118971|P30279-2|CCND2;ENSG00000112576|ENST00000372991|CCND3;ENSG00000110092|ENST00000227507|CCND1	ENSG00000118971|ENST00000261254|CCND2	ENSG00000118971|ENST00000261254|CCND2	MULTI-MSMS	HCT116MG_D190212_S3	3	1064.4981689453125	1	1064.49687	1063.4896	0.77584	0.00082588	0.62214	0.00066227	1.398	0.0014881	1064.4972226347788	57.295	0.1568	57.016	56.937	57.094	-0.27913					4	2	2	0	0	0	0.072989	1	21796	21796		63.563	27.519	1	2359500			7821	2621	4444	4479	7587	7587					-0.039607181395467705
EEEWDKYI	8	Unmodified	_EEEWDKYI_					0	0	0		nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	MULTI-MSMS	HCT116MG_D190212_S4	4	556.25	2	556.250754	1110.48696	0.21283	0.00011839	-0.6399	-0.00035595	-0.42707	-0.00023756	556.2503156944217	22.949	0.20795	22.711	22.55	22.758	-0.23758					6	3	2	0	0	0	0.73076	1	8009	8009		19.439	3.5918	1	1970400			7822	6442	4445	4480	7588	7588					-0.06386850272861011
EEFCPSHF	8	Unmodified	_EEFCPSHF_					0	0	0			REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF	REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	498.64447021484375	2	498.20001	994.385467	0.36806	0.00018337	0.73602	0.00036668	1.1041	0.00055005	498.20036144597856	54.878	0.20898	54.582	54.4	54.609	-0.29587					5	3	2	0	0	0	0.29766	1	20786	20786		14.582	1.0738	1	2435600	+		7823	15807	4446	4481	7589	7589					-0.11195000176405756
EEFDARWVTY	10	Unmodified	_EEFDARWVTY_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-MSMS	HCT116MG_D190212_S2	2	658.3014526367188	2	658.30131	1314.58807	0.31107	0.00020478	-1.5807	-0.0010406	-1.2696	-0.00083578	658.3013078869423	49.417	0.40627	49.263	49.086	49.492	-0.15405					17	7	3	0	0	0	0.021392	1	18913	18913		117.84	72.138	1	90747000			7824	5513	4447	4482	7590	7590					-0.05664398570161211
EEFDRFTGY	9	Unmodified	_EEFDRFTGY_					0	0	0		ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;DPP9|p.F814Sfs*10|1|0.34|ENSG00000142002|chr19:4679893-4679893|A/-|frameshift_variant;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	582.2726440429688	2	582.253828	1162.4931	0.38703	0.00022535	0.50713	0.00029528	0.89416	0.00052063	582.2542971815175	41.953	0.20829	41.651	41.572	41.781	-0.30257					6	3	2	0	0	0	0.20548	1	15621	15621		32.786	14.639	1	2394200			7825	729	4448	4483	7591	7591					-0.0816433204133773
EEFEKVMVA	9	Unmodified	_EEFEKVMVA_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	541.2649536132812	2	541.26535	1080.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.746	1	39.445	38.945	39.945	-0.30137								0	0	0	0.007573	1	14752	14752		110.55	76.151	1				7826	741	4449	4484	7592	7592					-0.02089029248213592
EEFEKVMVA	9	Unmodified	_EEFEKVMVA_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	541.2671508789062	2	541.26535	1080.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.864	1	39.485	38.985	39.985	-0.37936								0	0	0	0.24084	1	14615	14615		44.407	28.56	1				7827	741	4449	4484	7593	7593					-0.02089029248213592
EEFELLGKAY	10	Unmodified	_EEFELLGKAY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S1	1	599.803466796875	2	599.803154	1197.59175	0.37624	0.00022567	0.073763	4.4243E-05	0.45	0.00026991	600.304489727961	51.22	0.3617	51.22	50.936	51.297	0					12	6	3	0	0	0	0.0026164	1	19569	19569		173.69	115.96	1	35218000			7828	5757	4450	4485	7594	7594					0.0008627120373603248
EEFELLGKAY	10	Unmodified	_EEFELLGKAY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MSMS	HCT116MG_D190212_S4	4	599.803955078125	2	599.803154	1197.59175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.716	1	51.365	50.865	51.865	-0.35028								0	0	0	0.94551	1	19256	19256		5.7319	2.1354	1				7829	5757	4450	4485	7595	7595					0.0008627120373603248
EEFERIHQA	9	Unmodified	_EEFERIHQA_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MSMS	HCT116MG_D190212_S2	2	579.7804565429688	2	579.780544	1157.54654	0.37547	0.00021769	-0.19622	-0.00011377	0.17925	0.00010392	580.2819195370106	25.5	0.2091	25.131	25.03	25.239	-0.36914					7	3	3	0	0	0	0.010825	1	9206	9206		133.05	104.57	1	12742000			7830	5122	4451	4486	7596	7596					-0.02593534538800668
EEFERIHQA	9	Unmodified	_EEFERIHQA_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	HCT116MG_D190212_S3	3	580.2821655273438	2	579.780544	1157.54654	0.53877	0.00031237	-0.1087	-6.3025E-05	0.43007	0.00024935	579.7802592150309	25.213	0.20861	25.107	24.995	25.204	-0.10618					5	3	2	0	0	0	0.066778	1	9011	9011		80.676	57.94	1	6284600			7831	5122	4451	4486	7597	7597					-0.02593534538800668
EEFERIHQA	9	Unmodified	_EEFERIHQA_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	HCT116MG_D190212_S4	4	579.2221069335938	2	579.780544	1157.54654	0.39732	0.00023036	1.4573	0.00084494	1.8547	0.0010753	579.781533888169	25.468	0.156	25.188	25.11	25.266	-0.27958					4	2	2	0	0	0	0.2338	1	9012	9012		9.544	0	1	1505600			7832	5122	4451	4486	7598	7598					-0.02593534538800668
EEFGGLVSA	9	Unmodified	_EEFGGLVSA_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.L1842Yfs*10|1|0.19|ENSG00000163625|chr4:84755300-84755300|A/-|frameshift_variant	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	HCT116MG_D190212_S2	2	908.4357299804688	1	908.435989	907.428712	1.0168	0.00092366	-0.25431	-0.00023102	0.76245	0.00069264	908.4354558054581	46.608	0.25702	46.497	46.369	46.626	-0.11121					6	4	2	0	0	0	0.071351	1	17794	17794		64.236	20.464	1	10159000			7833	4614	4452	4487	7599	7599					-0.02870487127472643
EEFGGLVSA	9	Unmodified	_EEFGGLVSA_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.L1842Yfs*10|1|0.19|ENSG00000163625|chr4:84755300-84755300|A/-|frameshift_variant	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	HCT116MG_D190212_S3	3	908.4365234375	1	908.435989	907.428712	0.77508	0.00070411	0.15705	0.00014267	0.93213	0.00084678	908.4359337518217	46.817	0.26069	46.503	46.385	46.646	-0.31405					7	4	2	0	0	0	0.057285	1	17576	17576		71.134	22.788	1	7006800			7834	4614	4452	4487	7600	7600					-0.02870487127472643
EEFGGLVSA	9	Unmodified	_EEFGGLVSA_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.L1842Yfs*10|1|0.19|ENSG00000163625|chr4:84755300-84755300|A/-|frameshift_variant	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	HCT116MG_D190212_S4	4	908.43603515625	1	908.435989	907.428712	0.84913	0.00077138	-0.20206	-0.00018356	0.64706	0.00058782	908.4356989318496	46.881	0.2075	46.51	46.38	46.588	-0.37134					6	3	2	0	0	0	0.19218	1	17338	17338		42.095	7.6928	1	3146500			7835	4614	4452	4487	7601	7601					-0.02870487127472643
EEFHIYTQY	9	Unmodified	_EEFHIYTQY_					0	0	0		PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant;ENSG00000120278|ENST00000696526|PLEKHG1	PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	615.27734375	2	615.277303	1228.54005	0.6943	0.00042718	0.32251	0.00019843	1.0168	0.00062562	615.2771556455668	43.639	0.41228	43.562	43.3	43.712	-0.076275					11	7	2	0	0	0	0.19218	1	16588	16588		42.095	19.358	1	27410000			7836	2693	4453	4488	7602	7602					-0.06507472490170585
EEFHIYTQY	9	Unmodified	_EEFHIYTQY_					0	0	0		PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant;ENSG00000120278|ENST00000696526|PLEKHG1	PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	615.277303	1228.54005	0.47095	0.00028977	-1.1046	-0.00067964	-0.63366	-0.00038987	615.7775085174521	43.863	0.26088	43.557	43.396	43.657	-0.30616	-0.0028919	-0.0011809	NaN	42.095	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2314400			7837	2693	4453	4488							-0.06507472490170585
EEFHSVVH	8	Unmodified	_EEFHSVVH_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	492.2330017089844	2	492.232699	982.450845	0.32141	0.00015821	-0.073579	-3.6218E-05	0.24783	0.00012199	492.23254260063896	24.961	0.26194	24.961	24.778	25.04	0					6	4	2	0	0	0	0.30262	1	8972	8972		13.508	8.7519	1	2933100			7838	735	4454	4489	7603	7603					-0.04108262659042339
EEFHSVVH	8	Unmodified	_EEFHSVVH_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	492.232699	982.450845	0.29285	0.00014415	-0.47289	-0.00023277	-0.18004	-8.8622E-05	492.23232017644983	25.373	0.20819	24.998	24.868	25.076	-0.37521	0.018426	-6.6716E-05	NaN	18.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7147800			7839	735	4454	4489							-0.04108262659042339
EEFHVFVL	8	Unmodified	_EEFHVFVL_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B;OTUD7A|p.L398Dfs*31|1|0.05|ENSG00000169918|chr15:31487525-31487526|-/TC|frameshift_variant;OTUD7B|p.G523Afs*2|1|0.07|ENSG00000264522|chr1:149944821-149944821|C/-|frameshift_variant;OTUD7A|p.V467Cfs*62|1|0.44|ENSG00000169918|chr15:31484676-31484676|C/-|frameshift_variant;nc|ENSG00000169918|Q8TE49|OTUD7A;ENSG00000169918|ENST00000307050|OTUD7A	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;nc|ENSG00000169918|Q8TE49|OTUD7A	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-MSMS	HCT116MG_D190212_S2	2	510.2635192871094	2	510.263468	1018.51238	0.41326	0.00021087	-0.13504	-6.8905E-05	0.27822	0.00014196	510.2633058313242	56.627	0.16012	56.445	56.364	56.524	-0.18261					4	2	2	0	0	0	0.40466	1	21876	21876		49.669	15.482	1	56323000			7840	6643;5101	4455	4490	7604	7604					0.003866690402333006
EEFKDFNKY	9	Unmodified	_EEFKDFNKY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	HCT116MG_D190212_S3	3	611.2910766601562	2	610.285128	1218.5557	0.48299	0.00029476	0.41017	0.00025032	0.89316	0.00054508	610.2842774734067	33.96	0.51974	33.666	33.3	33.819	-0.29419					16	9	3	0	0	0	0.52876	1	12487	12487		21.747	10.923	1	7279000			7841	2975	4456	4491	7605	7605					-0.0448318597314028
EEFKDFNKY	9	Unmodified	_EEFKDFNKY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	HCT116MG_D190212_S3	3	407.1922607421875	3	407.192511	1218.5557	0.049006	1.9955E-05	0.077701	3.1639E-05	0.12671	5.1594E-05	407.1923542249949	33.983	0.20835	33.689	33.559	33.767	-0.29419					5	3	2	0	0	0	0.35842	1	12510	12510		24.991	19.588	1	4052900			7842	2975	4456	4491	7606	7606					-0.0448318597314028
EEFKDFNKY	9	Unmodified	_EEFKDFNKY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MSMS	HCT116MG_D190212_S4	4	610.2853393554688	2	610.285128	1218.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.074	1	33.69	33.19	34.19	-0.38426								0	0	0	0.58014	1	12428	12428		26.268	7.0112	1				7843	2975	4456	4491	7607	7607					-0.0448318597314028
EEFKDFNKY	9	Unmodified	_EEFKDFNKY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;KDM4B|p.P511Lfs*8|1|0.14|ENSG00000127663|chr19:5131288-5131288|C/-|frameshift_variant;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MATCH	HCT116MG_D190212_S2	2		3	407.192511	1218.5557	0.018619	7.5814E-06	-0.060898	-2.4797E-05	-0.042279	-1.7216E-05	407.19222578924524	33.753	0.15621	33.56	33.43	33.587	-0.19297	-0.064349	-0.00012153	NaN	24.991	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10151000			7844	2975	4456	4491							-0.0448318597314028
EEFKDRTRFTF	11	Unmodified	_EEFKDRTRFTF_					0	0	0			REV__ACACA|p.A1397T|1|0.11|ENSG00000278540|chr17:37193385-37193385|C/T|missense_variant	REV__ACACA|p.A1397T|1|0.11|ENSG00000278540|chr17:37193385-37193385|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	738.3687133789062	2	738.367515	1474.72048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.955	1	20.989	20.489	21.489	0.034473								0	0	0	0.95686	1	7277	7277		2.7352	0.23671	1		+		7845	9829	4457	4492	7608	7608					0.002106261666313003
EEFKHIAV	8	Unmodified	_EEFKHIAV_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	HCT116MG_D190212_S1	1	486.7611083984375	2	486.761092	971.507631	0.10459	5.091E-05	-0.22661	-0.00011031	-0.12202	-5.9395E-05	486.76093764375634	32.352	0.36451	32.352	32.17	32.534	0					9	6	2	0	0	0	0.049954	1	11937	11937		123.45	59.888	1	18547000			7846	770	4458	4493	7609	7609					0.02073784897470432
EEFKHIAV	8	Unmodified	_EEFKHIAV_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	HCT116MG_D190212_S2	2	486.7611999511719	2	486.761092	971.507631	0.15657	7.6213E-05	0.24719	0.00012032	0.40377	0.00019654	486.7611871473683	32.615	0.26067	32.404	32.273	32.534	-0.21135					7	4	2	0	0	0	0.038852	1	12084	12084		136.33	72.771	1	75293000			7847	770	4458	4493	7610	7610					0.02073784897470432
EEFKITSF	8	Unmodified	_EEFKITSF_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MSMS	HCT116MG_D190212_S2	2	500.8055419921875	2	500.752933	999.491313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.85	1	48.707	48.207	49.207	-0.1437								0	0	0	0.23909	1	18677	18677		62.573	30.267	1				7848	1501	4459	4494	7611	7611					-0.008453410592892396
EEFKITSF	8	Unmodified	_EEFKITSF_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-MSMS	HCT116MG_D190212_S3	3	500.7588195800781	2	500.752933	999.491313	0.60484	0.00030288	-0.32189	-0.00016119	0.28295	0.00014169	500.7528197473589	49.052	0.26505	48.736	48.605	48.87	-0.31596					6	4	2	0	0	0	0.82475	1	18416	18416		8.5933	8.5933	1	5611700			7849	1501	4459	4494	7612	7612					-0.008453410592892396
EEFKKIRSA	9	Unmodified	_EEFKKIRSA_					0	0	0		ENSG00000143333|ENST00000367558|RGS16	ENSG00000143333|ENST00000367558|RGS16	ENSG00000143333|ENST00000367558|RGS16	MULTI-MSMS	HCT116MG_D190212_S2	2	554.3115234375	2	554.31148	1106.60841	0.28029	0.00015537	0.055684	3.0866E-05	0.33598	0.00018624	554.3114196206934	20.429	0.21267	20.05	19.917	20.13	-0.37949					5	3	2	0	0	0	0.47413	1	7167	7167		18.373	1.2602	1	10257000			7850	3798	4460	4495	7613	7613					0.05936816880330298
EEFKTHHEM	9	Unmodified	_EEFKTHHEM_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S1	1	594.2614135742188	2	594.26113	1186.50771	0.50527	0.00030026	-0.11185	-6.6465E-05	0.39342	0.0002338	594.2611146148114	18.894	0.26065	18.894	18.714	18.975	0					9	4	3	0	0	0	0.34272	1	6549	6549		26.268	16.885	1	8794200			7851	962	4461	4496	7614	7614					-0.07808583164819538
EEFKTHHEM	9	Unmodified	_EEFKTHHEM_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S2	2	594.2614135742188	2	594.26113	1186.50771	0.63945	0.00038	-0.16405	-9.7489E-05	0.4754	0.00028251	594.2609956428942	19.647	0.20772	19.272	19.143	19.351	-0.37503					9	3	3	0	0	0	0.0055242	2	6829	6802;6829		133.05	91.213	1	37050000			7852	962	4461	4496	7615;7616	7616					-0.07808583164819538
EEFKTHHEM	9	Unmodified	_EEFKTHHEM_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S2	2	396.5096435546875	3	396.509846	1186.50771	0.016716	6.6282E-06	0.041655	1.6517E-05	0.058371	2.3145E-05	396.5097754474209	19.647	0.20772	19.272	19.143	19.351	-0.37503					7	3	3	0	0	0	0.14171	1	6840	6840		45.74	36.988	1	17713000			7853	962	4461	4496	7617	7617					-0.07808583164819538
EEFKTHHEM	9	Unmodified	_EEFKTHHEM_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	396.509846	1186.50771	-0.18955	-7.5158E-05	-0.12844	-5.0928E-05	-0.31799	-0.00012609	396.5098211678372	18.897	0.20853	18.897	18.766	18.975	0	-0.18779	-0.00011523	NaN	45.74	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6568900			7854	962	4461	4496							-0.07808583164819538
EEFKVKLY	8	Unmodified	_EEFKVKLY_					0	0	0		HTATSF1|p.T358Pfs*9|1|0.2|ENSG00000102241|chrX:136510815-136510815|A/-|frameshift_variant;HTATSF1|p.K555Nfs*38|1|0.74|ENSG00000102241|chrX:136511406-136511406|A/-|frameshift_variant;HTATSF1|p.V610Cfs*2|1|0.32|ENSG00000102241|chrX:136511568-136511568|A/-|frameshift_variant;ENSG00000102241|ENST00000218364|HTATSF1	HTATSF1|p.T358Pfs*9|1|0.2|ENSG00000102241|chrX:136510815-136510815|A/-|frameshift_variant	HTATSF1|p.T358Pfs*9|1|0.2|ENSG00000102241|chrX:136510815-136510815|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	528.2529296875	2	528.292225	1054.5699	0.5342	0.00028221	-0.16177	-8.5463E-05	0.37243	0.00019675	528.2922047067356	41.064	0.20831	40.762	40.632	40.84	-0.30185					5	3	2	0	0	0	0.27349	1	15288	15288		30.225	18.585	1	2853800			7855	1833	4462	4497	7618	7618					0.04479511245813228
EEFKVPAA	8	Unmodified	_EEFKVPAA_					0	0	0		ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1	ENSG00000120686|ENST00000239878|UFM1	ENSG00000120686|ENST00000239878|UFM1	MULTI-MSMS	HCT116MG_D190212_S2	2	445.7347106933594	2	445.734543	889.454533	0.47098	0.00020993	0.30292	0.00013502	0.7739	0.00034495	445.73447261650585	36.196	0.41344	36.068	35.761	36.174	-0.12799					14	7	2	0	0	0	0.2477	1	13549	13549		64.236	28.109	1	15927000			7856	2705	4463	4498	7619	7619					0.0053840711480006576
EEFKVPAA	8	Unmodified	_EEFKVPAA_					0	0	0		ENSG00000120686|ENST00000239878|UFM1;nc|ENSG00000120686|P61960-2|UFM1	ENSG00000120686|ENST00000239878|UFM1	ENSG00000120686|ENST00000239878|UFM1	MULTI-MSMS	HCT116MG_D190212_S3	3	445.73468017578125	2	445.734543	889.454533	-0.19962	-8.898E-05	0.7759	0.00034585	0.57627	0.00025687	445.7346401567962	36.316	0.36399	36.016	35.781	36.145	-0.30042					11	6	2	0	0	0	0.55794	1	13421	13421		36.044	1.9418	1	7049700			7857	2705	4463	4498	7620	7620					0.0053840711480006576
EEFLKEPLVP	10	Unmodified	_EEFLKEPLVP_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MSMS	HCT116MG_D190212_S3	3	600.8270263671875	2	600.829172	1199.64379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.349	1	46.037	45.537	46.537	-0.31237								0	0	0	0.87399	1	17376	17376		19.257	4.4187	1		+		7858	13067	4464	4499	7621	7621					0.05195434617485262
EEFNPKGQF	9	Unmodified	_EEFNPKGQF_					0	0	0			REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF	REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF	MSMS	HCT116MG_D190212_S4	4	548.2576904296875	2	548.258914	1094.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.741	1	19.548	19.048	20.048	-0.19367								0	0	0	0.74436	1	6715	6715		16.942	2.104	1		+		7859	12978	4465	4500	7622	7622					-0.04019724316094653
EEFNQPLSV	9	Unmodified	_EEFNQPLSV_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	HCT116MG_D190212_S2	2	1062.5108642578125	1	1062.51022	1061.50294	0.69546	0.00073894	-0.18606	-0.00019769	0.5094	0.00054125	1062.5102131120518	45.076	0.20993	44.984	44.839	45.049	-0.092472					5	3	2	0	0	0	0.0012137	1	17155	17155		191.38	126.15	1	13269000			7860	2804	4466	4501	7623	7623					-0.02535144035960002
EEFNQPLSV	9	Unmodified	_EEFNQPLSV_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	HCT116MG_D190212_S3	3	531.759033203125	2	531.758746	1061.50294	0.50882	0.00027057	0.0023026	1.2244E-06	0.51112	0.00027179	531.7586893651664	45.292	0.26095	44.982	44.836	45.097	-0.30976					7	4	2	0	0	0	0.0062667	1	16961	16961		126.57	95.929	1	5145800			7861	2804	4466	4501	7624	7624					-0.02535144035960002
EEFNQPLSV	9	Unmodified	_EEFNQPLSV_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MSMS	HCT116MG_D190212_S4	4	531.75927734375	2	531.758746	1061.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.36	1	44.988	44.488	45.488	-0.37266								0	0	0	0.16454	1	16730	16730		49.933	22.304	1				7862	2804	4466	4501	7625	7625					-0.02535144035960002
EEFPSFGA	8	Unmodified	_EEFPSFGA_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;ENST00000494862.1_1_2:242169018-242169382:-|nuORF;ENST00000487169.5_1_2:242169018-242169255:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S2	2	883.3843994140625	1	883.383225	882.375948	0.89559	0.00079115	-0.21571	-0.00019055	0.67988	0.0006006	883.3830196195447	48.787	0.6075	48.643	48.388	48.996	-0.1437					21	11	2	0	0	0	0.0057235	1	18621	18621		170.4	88.533	1	67887000			7863	2480	4467	4502	7626	7626					-0.06994445190275655
EEFPSFGA	8	Unmodified	_EEFPSFGA_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;ENST00000494862.1_1_2:242169018-242169382:-|nuORF;ENST00000487169.5_1_2:242169018-242169255:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S3	3	883.383544921875	1	883.383225	882.375948	0.9313	0.00082269	-0.16539	-0.0001461	0.76591	0.00067659	883.3828999027054	49.063	0.78423	48.747	48.348	49.132	-0.31596					34	14	3	0	0	0	0.0057235	1	18390	18390		170.4	76.514	1	22233000			7864	2480	4467	4502	7627	7627					-0.06994445190275655
EEFPSFGA	8	Unmodified	_EEFPSFGA_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;ENST00000494862.1_1_2:242169018-242169382:-|nuORF;ENST00000487169.5_1_2:242169018-242169255:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S4	4	883.3848266601562	1	883.383225	882.375948	0.63448	0.00056049	-0.039096	-3.4537E-05	0.59538	0.00052595	883.3830163981283	49.137	0.4718	48.772	48.493	48.965	-0.365					17	9	2	0	0	0	0.044999	1	18152	18152		129.2	65.638	1	4913100			7865	2480	4467	4502	7628	7628					-0.06994445190275655
EEFQFIKK	8	Unmodified	_EEFQFIKK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	534.7900390625	2	534.78985	1067.56515	0.51465	0.00027523	-0.017185	-9.1902E-06	0.49746	0.00026604	534.7897776066594	35.811	0.26004	35.811	35.682	35.942	0					7	4	2	0	0	0	0.047269	1	13348	13348		126.57	22.818	1	23019000			7866	3655	4468	4503	7629	7629					0.034066271030496864
EEFQFIKK	8	Unmodified	_EEFQFIKK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	534.7901000976562	2	534.78985	1067.56515	0.84791	0.00045345	-0.291	-0.00015562	0.55691	0.00029783	534.7894541254025	35.897	0.30933	35.769	35.606	35.916	-0.12799					11	5	3	0	0	0	0.11121	1	13420	13420		92.491	13.763	1	28112000			7867	3655	4468	4503	7630	7630					0.034066271030496864
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	570.3087768554688	2	570.308406	1138.60226	0.23539	0.00013424	-0.0068865	-3.9275E-06	0.2285	0.00013032	570.3081061725289	37.357	0.25771	37.253	37.078	37.335	-0.10318					12	4	4	0	0	0	0.0035183	1	13988	13988		157.8	50.855	1	112120000			7868	3655	4469	4504	7631	7631					0.03850298648808348
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MSMS	HCT116MG_D190212_S2	2	380.5413818359375	3	380.541363	1138.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.376	1	37.273	36.773	37.773	-0.10318								0	0	0	0.060494	1	14007	14007		51.63	7.648	1				7869	3655	4469	4504	7632	7632					0.03850298648808348
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	570.3090209960938	2	570.308406	1138.60226	0.54103	0.00030855	-0.19482	-0.00011111	0.34621	0.00019745	570.3081007523301	37.513	0.2342	37.211	37.081	37.315	-0.30137					9	5	2	0	0	0	0.0019609	1	13899	13899		187.3	62.259	1	49747000			7870	3655	4469	4504	7633	7633					0.03850298648808348
EEFQFIKKA	9	Unmodified	_EEFQFIKKA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	380.5411682128906	3	380.541363	1138.60226	0.012725	4.8424E-06	0.019433	7.395E-06	0.032158	1.2237E-05	380.5412419271844	37.54	0.22255	37.239	37.081	37.304	-0.30137					6	4	2	0	0	0	0.14972	1	13916	13916		43.772	13.932	1	12902000			7871	3655	4469	4504	7634	7634					0.03850298648808348
EEFQGEWTAP	10	Unmodified	_EEFQGEWTAP_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000442177.1_1_2:209073395-209073674:+|nuORF;ENST00000416785.1_1_6:28699967-28700618:+|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	597.25927734375	2	597.259111	1192.50367	0.66018	0.0003943	0.26094	0.00015585	0.92112	0.00055015	597.258977979964	45.745	0.35908	45.643	45.556	45.915	-0.1014					14	6	3	0	0	0	0.029378	1	17432	17432		103.42	78.02	1	21303000			7872	4975	4470	4505	7635	7635					-0.08488349386902883
EEFQGEWTAP	10	Unmodified	_EEFQGEWTAP_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000442177.1_1_2:209073395-209073674:+|nuORF;ENST00000416785.1_1_6:28699967-28700618:+|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	597.259111	1192.50367	0.63317	0.00037817	0.54174	0.00032356	1.1749	0.00070173	597.2594827644413	45.686	0.26266	45.686	45.555	45.818	0	0.021559	0.0001339	NaN	103.42	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4616500			7873	4975	4470	4505							-0.08488349386902883
EEFQIHVF	8	Unmodified	_EEFQIHVF_					0	0	0		RABGAP1L|p.Q482Rfs*36|1|0.35|ENSG00000152061|chr1:174305103-174305103|C/-|frameshift_variant;nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	RABGAP1L|p.Q482Rfs*36|1|0.35|ENSG00000152061|chr1:174305103-174305103|C/-|frameshift_variant	RABGAP1L|p.Q482Rfs*36|1|0.35|ENSG00000152061|chr1:174305103-174305103|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	525.2607421875	2	524.758549	1047.50255	0.35101	0.00018419	0.73937	0.00038799	1.0904	0.00057219	524.7587524666591	53.967	0.20741	53.667	53.561	53.769	-0.29946					5	3	2	0	0	0	0.20521	1	20461	20461		52.693	31.822	1	3121900			7874	4133	4471	4506	7636	7636					-0.019305189651277033
EEFQIHVF	8	Unmodified	_EEFQIHVF_					0	0	0		RABGAP1L|p.Q482Rfs*36|1|0.35|ENSG00000152061|chr1:174305103-174305103|C/-|frameshift_variant;nc|ENSG00000152061|Q5R372-2|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	RABGAP1L|p.Q482Rfs*36|1|0.35|ENSG00000152061|chr1:174305103-174305103|C/-|frameshift_variant	RABGAP1L|p.Q482Rfs*36|1|0.35|ENSG00000152061|chr1:174305103-174305103|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7589721679688	2	524.758549	1047.50255	0.44846	0.00023533	-0.074734	-3.9217E-05	0.37372	0.00019611	524.7585644202081	53.968	0.20818	53.639	53.509	53.717	-0.32923					5	3	2	0	0	0	0.64761	1	20196	20196		28.173	15.642	1	3620600			7875	4133	4471	4506	7637	7637					-0.019305189651277033
EEFQTPITY	9	Unmodified	_EEFQTPITY_					0	0	0		ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2667236328125	2	564.266404	1126.51826	0.86795	0.00048976	-0.18277	-0.00010313	0.68518	0.00038662	564.2662016783663	46.659	0.36013	46.548	46.369	46.729	-0.11121					13	6	3	0	0	0	0.0053819	1	17803	17803		134.3	90.437	1	41682000			7876	3060	4472	4507	7638	7638					-0.03994277238757604
EEFQTPITY	9	Unmodified	_EEFQTPITY_					0	0	0		ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	MULTI-MSMS	HCT116MG_D190212_S2	2	1127.527099609375	1	1127.52553	1126.51826	0.98793	0.0011139	0.91875	0.0010359	1.9067	0.0021498	1127.5266327991405	46.688	0.25724	46.577	46.42	46.677	-0.11121					6	4	2	0	0	0	0.0042464	1	17815	17815		147.06	101.04	1	10088000			7877	3060	4472	4507	7639	7639					-0.03994277238757604
EEFQTPITY	9	Unmodified	_EEFQTPITY_					0	0	0		ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2666015625	2	564.266404	1126.51826	0.47845	0.00026997	-0.1579	-8.9096E-05	0.32055	0.00018088	564.2662243636734	46.911	0.41713	46.597	46.385	46.802	-0.31405					19	7	3	0	0	0	0.0042464	1	17595	17595		147.06	94.791	1	17099000			7878	3060	4472	4507	7640	7640					-0.03994277238757604
EEFQTPITY	9	Unmodified	_EEFQTPITY_					0	0	0		ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	MULTI-MSMS	HCT116MG_D190212_S4	4	564.267333984375	2	564.266404	1126.51826	0.45672	0.00025771	0.23981	0.00013532	0.69653	0.00039303	564.266515844595	46.965	0.31124	46.594	46.381	46.693	-0.37038					10	5	2	0	0	0	0.023938	1	17348	17348		92.491	70.745	1	6286700			7879	3060	4472	4507	7641	7641					-0.03994277238757604
EEFQTPITY	9	Unmodified	_EEFQTPITY_					0	0	0		ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	ENSG00000130165|ENST00000252445|ELOF1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1127.52553	1126.51826	0.46757	0.0005272	-0.74325	-0.00083803	-0.27568	-0.00031084	1127.5240161245497	46.893	0.26078	46.579	46.437	46.698	-0.31405	0.00080036	-0.0013132	NaN	147.06	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3696000			7880	3060	4472	4507							-0.03994277238757604
EEFRASEL	8	Unmodified	_EEFRASEL_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	490.7378845214844	2	490.737814	979.461075	0.1687	8.2787E-05	-0.11002	-5.3991E-05	0.058679	2.8796E-05	490.7375765633626	36.653	0.26084	36.653	36.47	36.731	0					7	4	2	0	0	0	0.29007	1	13676	13676		60.074	24.03	1	9148900			7881	163	4473	4508	7642	7642					-0.02947699724472841
EEFRASEL	8	Unmodified	_EEFRASEL_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	490.73785400390625	2	490.737814	979.461075	0.33278	0.00016331	0.21645	0.00010622	0.54923	0.00026953	490.7377878426479	36.687	0.31043	36.572	36.395	36.705	-0.11478					12	5	3	0	0	0	0.33298	1	13717	13717		56.177	27.69	1	55225000			7882	163	4473	4508	7643	7643					-0.02947699724472841
EEFRASEL	8	Unmodified	_EEFRASEL_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	490.7373962402344	2	490.737814	979.461075	0.072335	3.5498E-05	-0.63448	-0.00031136	-0.56214	-0.00027586	490.73741596324356	36.841	0.25967	36.539	36.405	36.665	-0.30113					11	4	3	0	0	0	0.59507	1	13633	13633		32.786	11.039	1	15861000			7883	163	4473	4508	7644	7644					-0.02947699724472841
EEFREFNKY	9	Unmodified	_EEFREFNKY_					0	0	0		ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C	ENST00000489243.5_1_9:6758133-6893415:+|nuORF	ENST00000489243.5_1_9:6758133-6893415:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	630.651123046875	2	631.296027	1260.5775	0.6107	0.00038553	-4.1849	-0.0026419	-3.5742	-0.0022564	631.7937304099273	33.743	0.31211	33.55	33.43	33.742	-0.19297					9	5	2	0	0	0	0.23301	1	12547	12547		10.824	1.4408	1	16800000			7884	2101	4474	4509	7645	7645					-0.042363812245639565
EEFRHVIAW	9	Unmodified	_EEFRHVIAW_					0	0	0		ENSG00000117036|ENST00000368192|ETV3;ETV3|p.Q58H|1|0.27|ENSG00000117036|chr1:157135581-157135581|C/A|missense_variant;ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000253831|ENST00000454449|ETV3L	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-MSMS	HCT116MG_D190212_S1	1	594.7647094726562	2	593.803823	1185.59309	0.54442	0.00032328	-0.12311	-7.3105E-05	0.4213	0.00025017	593.8033373407337	44.769	0.25949	44.769	44.621	44.88	0					6	4	2	0	0	0	0.041798	2	16928	16928;16969		78.728	51.099	1	10888000			7885	2555	4475	4510	7646;7647	7646					0.007719500831171899
EEFRHVIAW	9	Unmodified	_EEFRHVIAW_					0	0	0		ENSG00000117036|ENST00000368192|ETV3;ETV3|p.Q58H|1|0.27|ENSG00000117036|chr1:157135581-157135581|C/A|missense_variant;ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000253831|ENST00000454449|ETV3L	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-MSMS	HCT116MG_D190212_S2	2	593.8042602539062	2	593.803823	1185.59309	0.86062	0.00051104	-0.11243	-6.6759E-05	0.74819	0.00044428	593.8038789947892	44.802	0.31148	44.717	44.535	44.846	-0.084797					9	5	2	0	0	0	0.011082	1	17025	17025		110.67	83.791	1	95417000			7886	2555	4475	4510	7648	7648					0.007719500831171899
EEFRHVIAW	9	Unmodified	_EEFRHVIAW_					0	0	0		ENSG00000117036|ENST00000368192|ETV3;ETV3|p.Q58H|1|0.27|ENSG00000117036|chr1:157135581-157135581|C/A|missense_variant;ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000253831|ENST00000454449|ETV3L	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-MSMS	HCT116MG_D190212_S2	2	396.2052307128906	3	396.204974	1185.59309	0.25698	0.00010182	0.12957	5.1337E-05	0.38655	0.00015315	396.20502712922956	44.75	0.25939	44.665	44.535	44.794	-0.084797					8	4	2	0	0	0	0.1754	1	17038	17038		33.445	19.227	1	20934000			7887	2555	4475	4510	7649	7649					0.007719500831171899
EEFRHVIAW	9	Unmodified	_EEFRHVIAW_					0	0	0		ENSG00000117036|ENST00000368192|ETV3;ETV3|p.Q58H|1|0.27|ENSG00000117036|chr1:157135581-157135581|C/A|missense_variant;ENST00000460850.1_1_1:157105261-157106150:-|nuORF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000253831|ENST00000454449|ETV3L	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-MSMS	HCT116MG_D190212_S3	3	593.8057861328125	2	593.803823	1185.59309	0.75117	0.00044605	1.754	0.0010415	2.5052	0.0014876	593.8051662863558	45.016	0.1561	44.706	44.628	44.785	-0.30927					4	2	2	0	0	0	0.34272	1	16872	16872		26.268	10.421	1	4697200			7888	2555	4475	4510	7650	7650					0.007719500831171899
EEFRSFGV	8	Unmodified	_EEFRSFGV_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	485.73492431640625	2	485.735074	969.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.097	1	43.024	42.524	43.524	-0.073376								0	0	0	0.042485	1	16331	16331		96.111	17.962	1				7889	2330	4476	4511	7651	7651					-0.030353785162674285
EEFRSFGV	8	Unmodified	_EEFRSFGV_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	485.73492431640625	2	485.735074	969.455596	0.23064	0.00011203	0.28757	0.00013968	0.51821	0.00025171	485.73516866350445	43.312	0.27093	43.007	42.918	43.189	-0.30472					8	5	2	0	0	0	0.26254	1	16196	16196		62.573	3.8939	1	5365500			7890	2330	4476	4511	7652	7652					-0.030353785162674285
EEFRSFGV	8	Unmodified	_EEFRSFGV_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	485.735074	969.455596	0.17606	8.5516E-05	-0.89638	-0.0004354	-0.72032	-0.00034989	485.73496364091096	43.082	0.20831	43.082	42.951	43.16	0	0.037183	-0.00093872	NaN	62.573	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6028600			7891	2330	4476	4511							-0.030353785162674285
EEFRSKTA	8	Unmodified	_EEFRSKTA_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.K1113Rfs*30|1|0.13|ENSG00000197969|chr9:77283645-77283645|A/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MULTI-MSMS	HCT116MG_D190212_S2	2	484.2455749511719	2	484.245806	966.47706	0.19232	9.313E-05	-4.0607	-0.0019664	-3.8684	-0.0018733	484.24574277936114	17.057	0.46845	16.708	16.457	16.925	-0.34933					15	8	3	0	0	0	0.46892	1	5834	5834		43.858	0	1	8067800			7892	9604	4477	4512	7653	7653					-0.0075199348757450934
EEFRSWKEP	9	Unmodified	_EEFRSWKEP_					0	0	0		ENST00000477409.1_1_2:97001567-97024936:+|nuORF;NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant;ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MSMS	HCT116MG_D190212_S2	2	604.2919921875	2	604.290745	1206.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.318	1	33.125	32.625	33.625	-0.19297								0	0	0	0.10186	1	12358	12358		55.503	24.234	1				7893	2726	4478	4513	7654	7654					-0.028083638789894394
EEFRSYEA	8	Unmodified	_EEFRSYEA_					0	0	0		nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;RC3H2|p.T1132Qfs*5|1|0.29|ENSG00000056586|chr9:122849809-122849809|T/-|frameshift_variant;ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-2|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2;RC3H2|p.F582Mfs*6|1|0.08|ENSG00000056586|chr9:122860022-122860023|-/AAAAGAAACAT|frameshift_variant	nc|ENSG00000056586|Q9HBD1-6|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	MSMS	HCT116MG_D190212_S4	4	515.7274780273438	2	515.727446	1029.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.111	1	28.771	28.271	29.271	-0.34059								0	0	0	0.65264	1	10498	10498		34.402	4.1769	1				7894	1088	4479	4514	7655	7655					-0.07320290104144078
EEFSHIHKP	9	Unmodified	_EEFSHIHKP_					0	0	0		ENST00000359314.5_1_6:47501434-47512410:+|nuORF	ENST00000359314.5_1_6:47501434-47512410:+|nuORF	ENST00000359314.5_1_6:47501434-47512410:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	375.18939208984375	3	375.189212	1122.54581	-0.14862	-5.5759E-05	-0.32381	-0.00012149	-0.47242	-0.00017725	375.18919525280734	23.044	0.26012	23.005	22.823	23.083	-0.03968					8	4	2	0	0	0	0.52876	1	8145	8145		15.248	6.2722	1	3444500			7895	7335	4480	4515	7656	7656					-0.010563291878725067
EEGEKVVKTA	10	Unmodified	_EEGEKVVKTA_					0	0	0		ENST00000511186.5_1_5:118788168-118811542:+|nuORF;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;HSD17B4|p.L703Ifs*15|1|0.06|ENSG00000133835|chr5:119536530-119536531|-/GAAAAATA|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4	ENST00000511186.5_1_5:118788168-118811542:+|nuORF	ENST00000511186.5_1_5:118788168-118811542:+|nuORF	MSMS	HCT116MG_D190212_S2	2	545.2821044921875	2	545.292953	1088.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.916	1	17.56	17.06	18.06	-0.35647								0	0	0	0.65446	1	6127	6127		53.404	34.147	1				7896	3252	4481	4516	7657	7657					0.03061100543914108
EEGEPDPEFE	10	Unmodified	_EEGEPDPEFE_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	HCT116MG_D190212_S3	3	588.9014892578125	2	589.230216	1176.44588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.313	1	16.398	15.898	16.898	0.085424								0	0	0	0.94339	1	5404	5404		6.2058	1.8765	1				7897	6166	4482	4517	7658	7658					-0.1352865610299432
EEGGLLYI	8	Unmodified	_EEGGLLYI_					0	0	0			REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-SECPEP	HCT116MG_D190212_S2	2	893.94140625	1	893.461475	892.454199	1.1016	0.00098426	-0.0062349	-5.5706E-06	1.0954	0.00097869	893.4615116966011	56.158	0.15401	55.975	55.898	56.052	-0.18261					4	2	2	0	0	0	0.19769	1	21653	21653		46.921	0	1	6983300	+		7898	11764	4483	4518	7659	7659					0.003669873949547764
EEGHIGVYY	9	Unmodified	_EEGHIGVYY_					0	0	0		ENSG00000147475|ENST00000519638|ERLIN2;ENST00000519872.1_1_8:37594193-37598024:+|nuORF;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	MULTI-MSMS	HCT116MG_D190212_S3	3	533.7462768554688	2	533.745639	1065.47673	0.48171	0.00025711	0.26663	0.00014231	0.74834	0.00039942	533.7458496741772	33.626	0.25903	33.336	33.2	33.459	-0.29013					9	4	3	0	0	0	0.39063	1	12390	12390		23.148	1.6114	1	6853700			7899	3987	4484	4519	7660	7660					-0.053394132074117806
EEGHLVVHEQI	11	Unmodified	_EEGHLVVHEQI_					0	0	0		ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	645.3277587890625	2	645.327859	1288.64116	0.70777	0.00045675	-0.34839	-0.00022482	0.35939	0.00023192	645.3276222533182	29.82	1.4056	29.584	28.719	30.124	-0.23655					61	26	3	0	0	0	0.70377	1	10568	10568		20.415	3.8487	1	15801000			7900	8674	4485	4520	7661	7661					0.008389792125399254
EEGHLVVHEQI	11	Unmodified	_EEGHLVVHEQI_					0	0	0		ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	645.3276977539062	2	645.327859	1288.64116	0.52506	0.00033883	0.51781	0.00033416	1.0429	0.00067299	645.3279849001068	32.324	0.62469	32.046	31.786	32.41	-0.27841					17	11	2	0	0	0	0.72792	1	11913	11913		11.495	0	1	2937900			7901	8674	4485	4520	7662	7662					0.008389792125399254
EEGHLVVHEQI	11	Unmodified	_EEGHLVVHEQI_					0	0	0		ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	645.3280029296875	2	645.327859	1288.64116	0.46981	0.00030318	-0.059825	-3.8607E-05	0.40998	0.00026457	645.327811028573	30.202	1.4837	29.845	28.558	30.041	-0.3571					66	29	3	0	0	0	0.68267	1	11014	11014		26.268	5.8536	1	10374000			7902	8674	4485	4520	7663	7663					0.008389792125399254
EEGHSSTVAA	10	Unmodified	_EEGHSSTVAA_					0	0	0		RNMT|p.T394Hfs*19|1|0.37|ENSG00000101654|chr18:13746254-13746254|A/-|frameshift_variant;ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT	RNMT|p.T394Hfs*19|1|0.37|ENSG00000101654|chr18:13746254-13746254|A/-|frameshift_variant	RNMT|p.T394Hfs*19|1|0.37|ENSG00000101654|chr18:13746254-13746254|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2225646972656	2	494.222528	986.430503	0.3459	0.00017095	-0.20512	-0.00010138	0.14078	6.9577E-05	494.2223689907412	16.936	0.20793	16.594	16.464	16.672	-0.34183					5	3	2	0	0	0	0.11491	1	5757	5757		71.134	45.734	1	14292000			7903	1802	4486	4521	7664	7664					-0.06325478109522464
EEGINIHLA	9	Unmodified	_EEGINIHLA_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S1	1	498.2619934082031	2	498.261456	994.50836	0.19282	9.6077E-05	0.21626	0.00010775	0.40908	0.00020383	498.261516028117	42.613	0.20394	42.613	42.486	42.69	0					6	3	2	0	0	0	0.050578	1	16094	16094		74.423	28.402	1	12430000			7904	5408	4487	4522	7665	7665					0.010885795465242154
EEGINIHLA	9	Unmodified	_EEGINIHLA_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S2	2	498.2618103027344	2	498.261456	994.50836	0.65921	0.00032846	-0.090563	-4.5124E-05	0.56865	0.00028333	498.26134882217445	42.613	0.36386	42.543	42.377	42.741	-0.069981					13	6	3	0	0	0	0.010304	1	16142	16142		112.59	48.357	1	34310000			7905	5408	4487	4522	7666	7666					0.010885795465242154
EEGINIHLA	9	Unmodified	_EEGINIHLA_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.M205Nfs*3|1|0.32|ENSG00000176102|chr11:33103156-33103157|-/T|frameshift_variant;CSTF3|p.D250Efs*28|1|0.05|ENSG00000176102|chr11:33102253-33102254|-/GGTTACTAAAATTT|frameshift_variant;CSTF3|p.R275Efs*40|1|0.38|ENSG00000176102|chr11:33102180-33102180|T/-|frameshift_variant;CSTF3|p.K439Nfs*33|4|0.35|ENSG00000176102|chr11:33096364-33096364|T/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	HCT116MG_D190212_S3	3	498.76336669921875	2	498.261456	994.50836	0.4581	0.00022825	0.4146	0.00020658	0.8727	0.00043483	498.2614787891204	42.838	0.25994	42.534	42.352	42.612	-0.30472					8	4	3	0	0	0	0.071351	1	15985	15985		64.236	26.262	1	8352500			7906	5408	4487	4522	7667	7667					0.010885795465242154
EEGKGAVY	8	Unmodified	_EEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S1	1	426.7084655761719	2	426.708525	851.402498	0.042672	1.8208E-05	0.044337	1.8919E-05	0.087009	3.7127E-05	426.70845964571913	21.306	0.42105	21.306	21.173	21.594	0					17	7	4	0	0	0	0.41924	1	7491	7491		48.346	12.302	1	65998000			7907	855	4488	4523	7668	7668					-0.029147562989578546
EEGKGAVY	8	Unmodified	_EEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S1	1	852.41015625	1	852.409774	851.402498	0.79576	0.00067831	0.18066	0.000154	0.97642	0.00083231	852.4096260728412	21.359	0.26474	21.359	21.173	21.437	0					9	4	3	0	0	0	0.12671	1	7496	7496		88.954	28.564	1	17109000			7908	855	4488	4523	7669	7669					-0.029147562989578546
EEGKGAVY	8	Unmodified	_EEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S2	2	426.70849609375	2	426.708525	851.402498	-0.055832	-2.3824E-05	0.11024	4.7042E-05	0.054412	2.3218E-05	426.70850070709184	21.786	0.52006	21.401	21.167	21.687	-0.38503					26	9	4	0	0	0	0.41924	1	7668	7668		48.346	12.302	1	223070000			7909	855	4488	4523	7670	7670					-0.029147562989578546
EEGKGAVY	8	Unmodified	_EEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S2	2	852.4105834960938	1	852.409774	851.402498	0.61667	0.00052566	0.18555	0.00015817	0.80223	0.00068383	852.4098534299796	21.786	0.67644	21.401	21.167	21.844	-0.38503					20	12	2	0	0	0	0.079196	1	7675	7675		99.799	39.409	1	118620000			7910	855	4488	4523	7671	7671					-0.029147562989578546
EEGKGAVY	8	Unmodified	_EEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S3	3	426.7081298828125	2	426.708525	851.402498	-0.018765	-8.0073E-06	-0.13348	-5.6959E-05	-0.15225	-6.4966E-05	426.70828752597527	21.122	0.52406	21.157	20.975	21.499	0.034473					19	9	4	0	0	0	0.41924	1	7326	7326		48.346	12.302	1	34229000			7911	855	4488	4523	7672	7672					-0.029147562989578546
EEGKGAVY	8	Unmodified	_EEGKGAVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S3	3	852.4100952148438	1	852.409774	851.402498	0.57656	0.00049146	-0.33633	-0.00028669	0.24023	0.00020477	852.409412706987	21.122	0.36498	21.157	20.975	21.339	0.034473					9	6	2	0	0	0	0.20876	1	7350	7350		71.922	19.654	1	6540300			7912	855	4488	4523	7673	7673					-0.029147562989578546
EEGKSKNNRP	10	Unmodified	_EEGKSKNNRP_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MSMS	HCT116MG_D190212_S2	2	386.8668212890625	3	386.866909	1157.5789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.523	1	19.153	18.653	19.653	-0.3695								0	0	0	0.92283	1	6774	6774		6.6235	0	1				7913	5719	4489	4524	7674	7674					0.006412528641931203
EEGKSNSHES	10	Unmodified	_EEGKSNSHES_					0	0	0			REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	MSMS	HCT116MG_D190212_S3	3	552.2325439453125	2	552.233624	1102.4527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.496	1	41.194	40.694	41.694	-0.30185								0	0	0	0.76907	1	15438	15438		32.786	6.5175	1		+		7914	17294	4490	4525	7675	7675					-0.09443298431756375
EEGLSHLTA	9	Unmodified	_EEGLSHLTA_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MSMS	HCT116MG_D190212_S2	2	478.7378234863281	2	478.737814	955.461075	0.27562	0.00013195	0.099489	4.7629E-05	0.37511	0.00017958	478.7378147682273	32.736	0.26008	32.525	32.377	32.638	-0.21135					7	4	2	0	0	0	0.007119	1	12142	12142		120.45	45.521	1	19215000			7915	1295	4491	4526	7676	7676					-0.01843699724486214
EEGLSHLTA	9	Unmodified	_EEGLSHLTA_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MATCH	HCT116MG_D190212_S3	3		2	478.737814	955.461075	0.47614	0.00022795	-0.35428	-0.00016961	0.12186	5.834E-05	478.7372760857142	32.871	0.15642	32.586	32.456	32.612	-0.28511	0.030767	-0.00039193	NaN	120.45	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3416200			7916	1295	4491	4526							-0.01843699724486214
EEGLVSQY	8	Unmodified	_EEGLVSQY_					0	0	0		NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant	NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	924.4288330078125	1	924.430903	923.423627	0.81792	0.00075611	-1.3081	-0.0012092	-0.49016	-0.00045312	924.4297233099683	36.827	0.25967	36.526	36.405	36.665	-0.30113					7	4	2	0	0	0	0.10976	1	13635	13635		92.822	32.433	1	7874800			7917	5275	4492	4527	7677	7677					-0.041147909900928425
EEGNVWLY	8	Unmodified	_EEGNVWLY_					0	0	0		ENST00000473880.5_1_7:102112843-102113359:+|nuORF;ENSG00000161036|ENST00000292616|LRWD1	ENST00000473880.5_1_7:102112843-102113359:+|nuORF	ENST00000473880.5_1_7:102112843-102113359:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1009.462646484375	1	1009.46254	1008.45526	0.55056	0.00055577	0.18412	0.00018587	0.73468	0.00074163	1009.4622764122937	54.344	0.20919	54.049	53.929	54.138	-0.29587					8	3	3	0	0	0	0.14246	1	20605	20605		85.357	49.313	1	3904700			7918	4478	4493	4528	7678	7678					-0.0486279823616087
EEGPLCCP	8	Unmodified	_EEGPLCCP_					0	0	0		ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF;ENST00000566424.1_1_16:29468907-29469081:+|nuORF;ENST00000395400.4_1_16:29468907-29472819:+|nuORF;nc|ENSG00000181625|Q9BQ83-2|SLX1A;ENST00000561824.5_1_16:30205929-30212162:+|nuORF	ENSG00000181625|ENST00000330181|SLX1B	ENSG00000181625|ENST00000330181|SLX1B	MSMS	HCT116MG_D190212_S1	1	424.1714172363281	2	424.169864	846.325175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.148	1	28.148	27.648	28.648	0								0	0	0	0.8837	1	10243	10243		10.183	0	1				7919	3172	4494	4529	7679	7679					-0.10413433831149632
EEGPPTRGA	9	Unmodified	_EEGPPTRGA_					0	0	0		ENSG00000213999|ENST00000424583|MEF2B;MEF2B|p.T274Pfs*130|1|0.54|ENSG00000213999|chr19:19146335-19146335|G/-|frameshift_variant;ENST00000409224.5_1_19:19256608-19257444:-|nuORF	ENSG00000213999|ENST00000424583|MEF2B	ENSG00000213999|ENST00000424583|MEF2B	MULTI-MSMS	HCT116MG_D190212_S3	3	457.2225036621094	2	457.222331	912.430109	0.20132	9.2046E-05	0.21583	9.8682E-05	0.41714	0.00019073	457.2223210719797	16.802	0.67649	16.886	16.496	17.173	0.084467					19	12	2	0	0	0	0.090581	1	5566	5566		60.074	12.325	1	6368500			7920	6422	4495	4530	7680	7680					-0.0296085303871223
EEGPPTRGA	9	Unmodified	_EEGPPTRGA_					0	0	0		ENSG00000213999|ENST00000424583|MEF2B;MEF2B|p.T274Pfs*130|1|0.54|ENSG00000213999|chr19:19146335-19146335|G/-|frameshift_variant;ENST00000409224.5_1_19:19256608-19257444:-|nuORF	ENSG00000213999|ENST00000424583|MEF2B	ENSG00000213999|ENST00000424583|MEF2B	MULTI-MSMS	HCT116MG_D190212_S4	4	457.22222900390625	2	457.222331	912.430109	-0.25333	-0.00011583	0.78369	0.00035832	0.53036	0.00024249	457.22271354095625	17.09	0.46512	16.921	16.605	17.071	-0.16887					11	8	2	0	0	0	0.041798	1	5638	5638		78.728	28.795	1	1257800			7921	6422	4495	4530	7681	7681					-0.0296085303871223
EEGQLNMM	8	Unmodified	_EEGQLNMM_					0	0	0			REV__nc|ENSG00000091831|P03372-4|ESR1	REV__nc|ENSG00000091831|P03372-4|ESR1	MSMS	HCT116MG_D190212_S2	2	476.198486328125	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.667	1	12.37	11.87	12.87	-0.29721								0	0	0	0.8837	1	4144	4144		0.79363	0	1		+		7922	11005	4496	4531	7682	7682					-0.09342377256677992
EEGRACAV	8	Unmodified	_EEGRACAV_					0	0	0		ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	ENSG00000088320|ENST00000201979|REM1	MULTI-MSMS	HCT116MG_D190212_S2	2	417.69219970703125	2	417.692352	833.370152	-0.062601	-2.6148E-05	0.19495	8.143E-05	0.13235	5.5282E-05	417.6923712066773	23.137	0.41548	22.752	22.622	23.037	-0.3852					13	7	3	0	0	0	0.50777	1	8235	8235		40.449	4.4044	1	67107000			7923	1494	4497	4532	7683	7683					-0.05319866973616172
EEGRVASGGPP	11	Unmodified	_EEGRVASGGPP_					0	0	0		ENSG00000167566|ENST00000335999|NCKAP5L;ENST00000433948.5_2_12:50185624-50186122:-|nuORF	ENSG00000167566|ENST00000335999|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	MULTI-MSMS	HCT116MG_D190212_S3	3	528.2303466796875	2	528.259445	1054.50434	0.25332	0.00013382	0.1877	9.9154E-05	0.44102	0.00023297	528.7610850087985	17.013	0.26028	17.098	16.912	17.173	0.084467					7	4	2	0	0	0	0.69401	1	5634	5634		24.021	6.9077	1	575980			7924	4934	4498	4533	7684	7684					-0.02073509947194907
EEGSLRRGKP	10	Unmodified	_EEGSLRRGKP_					0	0	0			REV__MPHOSPH8|p.T385M|1|0.24|ENSG00000196199|chr13:19647227-19647227|C/T|missense_variant	REV__MPHOSPH8|p.T385M|1|0.24|ENSG00000196199|chr13:19647227-19647227|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	564.8098754882812	2	564.809636	1127.60472	0.40114	0.00022657	-0.73847	-0.0004171	-0.33733	-0.00019053	564.8093740261232	21.267	0.20662	20.884	20.755	20.961	-0.38288					5	3	2	0	0	0	0.76143	1	7489	7489		15.248	2.206	1	7031300	+		7925	14010	4499	4534	7685	7685					0.04602147106470511
EEGSRHPVLVP	11	Unmodified	_EEGSRHPVLVP_					0	0	0		ENST00000434650.6_1_17:80407047-80407149:-|nuORF;ENST00000585044.5_1_17:80407044-80407149:-|nuORF;ENST00000582725.5_1_17:80405500-80407149:-|nuORF;ENST00000306645.9_1_17:80404571-80407146:-|nuORF;ENST00000584024.5_1_17:80403796-80407143:-|nuORF	ENST00000434650.6_1_17:80407047-80407149:-|nuORF	ENST00000434650.6_1_17:80407047-80407149:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	610.184326171875	2	610.325119	1218.63569	0.75732	0.00046221	-0.12934	-7.8941E-05	0.62798	0.00038327	610.3249687906243	28.635	0.63432	28.635	28.321	28.955	0					16	11	2	0	0	0	0.36334	1	10330	10330		3.2813	1.9518	1	5030800			7926	7029	4500	4535	7686	7686					0.03511300420700536
EEGTCTAY	8	Unmodified	_EEGTCTAY_					0	0	0			REV__ENSG00000118777|ENST00000237612|ABCG2	REV__ENSG00000118777|ENST00000237612|ABCG2	MSMS	HCT116MG_D190212_S2	2	436.8737487792969	2	437.168376	872.322198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.247	1	19.868	19.368	20.368	-0.37949								0	0	0	0.8837	1	7067	7067		5.7604	0	1		+		7927	11642	4501	4536	7687	7687					-0.11906985684311167
EEHARFYAA	9	Unmodified	_EEHARFYAA_					0	0	0		ENSG00000067606|ENST00000378567|PRKCZ;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ	ENSG00000067606|ENST00000378567|PRKCZ	ENSG00000067606|ENST00000378567|PRKCZ	MULTI-MSMS	HCT116MG_D190212_S4	4	547.7593383789062	2	547.256705	1092.49886	0.49498	0.00027088	3.9603	0.0021673	4.4552	0.0024382	547.7596989854857	26.788	0.46764	26.484	26.125	26.593	-0.30497					13	8	2	0	0	0	0.30054	1	9581	9581		39.95	14.959	1	1679600			7928	1189	4502	4537	7688	7688					-0.04369188738996854
EEHARFYSA	9	Unmodified	_EEHARFYSA_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI;ENST00000392722.3_1_X:100793145-100793415:-|nuORF	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	HCT116MG_D190212_S2	2	555.2544555664062	2	555.254163	1108.49377	0.27309	0.00015164	0.58914	0.00032712	0.86224	0.00047876	555.254245495609	25.737	0.25946	25.368	25.187	25.446	-0.36914					7	4	2	0	0	0	0.0036431	1	9286	9286		155.95	84.031	1	18512000			7929	4609	4503	4538	7689	7689					-0.056134926016284226
EEHARFYSA	9	Unmodified	_EEHARFYSA_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI;ENST00000392722.3_1_X:100793145-100793415:-|nuORF	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	HCT116MG_D190212_S3	3	555.2540893554688	2	555.254163	1108.49377	0.50174	0.00027859	-0.30422	-0.00016892	0.19752	0.00010967	555.2539775800411	25.388	0.25986	25.282	25.152	25.412	-0.10618					7	4	2	0	0	0	0.037825	1	9071	9071		80.676	57.94	1	7751800			7930	4609	4503	4538	7690	7690					-0.056134926016284226
EEHARFYSA	9	Unmodified	_EEHARFYSA_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI;ENST00000392722.3_1_X:100793145-100793415:-|nuORF	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MSMS	HCT116MG_D190212_S4	4	555.2537231445312	2	555.254163	1108.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.75	1	25.459	24.959	25.959	-0.29022								0	0	0	0.76077	1	9140	9140		16.149	2.2431	1				7931	4609	4503	4538	7691	7691					-0.056134926016284226
EEHEFFHIL	9	Unmodified	_EEHEFFHIL_					0	0	0		nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8;nc|ENSG00000155508|Q9UFF9-2|CNOT8	nc|ENSG00000155508|Q9UFF9-3|CNOT8	nc|ENSG00000155508|Q9UFF9-3|CNOT8	MULTI-MSMS	HCT116MG_D190212_S2	2	600.7883911132812	2	600.787838	1199.56112	0.77094	0.00046317	0.3647	0.00021911	1.1356	0.00068228	600.7878722493436	52.626	0.25956	52.439	52.295	52.555	-0.18726					7	4	2	0	0	0	0.0035329	1	20237	20237		170.55	136.45	1	18105000			7932	4253	4504	4539	7692	7692					-0.030674623906634224
EEHEVAVL	8	Unmodified	_EEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	HCT116MG_D190212_S1	1	463.23492431640625	2	463.234907	924.455261	0.11567	5.3583E-05	0.13986	6.4788E-05	0.25553	0.00011837	463.2349706518118	36.352	0.37238	36.352	36.15	36.522	0					10	6	2	0	0	0	0.23352	1	13553	13553		67.035	10.494	1	12919000			7933	3742	4505	4540	7693	7693					-0.00998798236150833
EEHEVAVL	8	Unmodified	_EEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	HCT116MG_D190212_S2	2	463.23492431640625	2	463.234907	924.455261	0.31645	0.00014659	0.10118	4.6869E-05	0.41763	0.00019346	463.23480536495794	36.484	0.31161	36.356	36.174	36.486	-0.12799					10	5	3	0	0	0	0.25164	1	13646	13646		63.563	3.7676	1	76557000			7934	3742	4505	4540	7694	7694					-0.00998798236150833
EEHEVAVL	8	Unmodified	_EEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	HCT116MG_D190212_S2	2	925.4624633789062	1	925.462538	924.455261	1.1115	0.0010287	-0.55614	-0.00051469	0.55537	0.00051397	925.4613921909281	36.484	0.2075	36.356	36.226	36.434	-0.12799					6	3	2	0	0	0	0.36164	1	13672	13672		53.576	6.6547	1	19029000			7935	3742	4505	4540	7695	7695					-0.00998798236150833
EEHEVAVL	8	Unmodified	_EEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	HCT116MG_D190212_S3	3	463.2346496582031	2	463.234907	924.455261	0.22829	0.00010575	0.077949	3.6109E-05	0.30623	0.00014186	463.2348362322102	36.628	0.36439	36.327	36.145	36.509	-0.30113					15	6	3	0	0	0	0.23352	1	13529	13529		67.035	20.114	1	23712000			7936	3742	4505	4540	7696	7696					-0.00998798236150833
EEHEVAVL	8	Unmodified	_EEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;IFITM1|p.S16Afs*9|1|0.39|ENSG00000185885|chr11:314210-314210|C/-|frameshift_variant	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	HCT116MG_D190212_S4	4	463.2145080566406	2	463.234907	924.455261	0.04858	2.2504E-05	0.25864	0.00011981	0.30722	0.00014231	463.23503419366205	36.794	0.30891	36.409	36.178	36.487	-0.38486					9	5	2	0	0	0	0.23352	3	13455	13455;13468;13481		67.035	28.884	1	7626400			7937	3742	4505	4540	7697;7698;7699	7697					-0.00998798236150833
EEHHAEAF	8	Unmodified	_EEHHAEAF_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;nc|ENSG00000163618|Q9ULU8-2|CADPS;nc|ENSG00000163618|Q9ULU8-3|CADPS	nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000163618|Q9ULU8-2|CADPS	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	HCT116MG_D190212_S1	1	485.35888671875	2	485.206681	968.398809	0.24189	0.00011737	0.35776	0.00017359	0.59966	0.00029096	485.2069403052689	22.35	0.15656	22.35	22.272	22.428	0					4	2	2	0	0	0	0.76257	1	7895	7895		15.768	6.4208	1	1943900			7938	9388;9521	4506	4541	7700	7700					-0.08665426072809623
EEHHIWLDP	9	Unmodified	_EEHHIWLDP_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MSMS	HCT116MG_D190212_S4	4	588.2799072265625	2	588.277638	1174.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.983	1	34.597	34.097	35.097	-0.38606								0	0	0	0.76575	1	12795	12795		15.847	3.3156	1		+		7939	13921	4507	4542	7701	7701					-0.03956633050484015
EEHKEVFRA	9	Unmodified	_EEHKEVFRA_					0	0	0		REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	572.7910766601562	2	572.790912	1143.56727	0.40345	0.00023109	0.067722	3.8791E-05	0.47117	0.00026988	572.790835780685	22.104	0.20831	21.719	21.635	21.844	-0.38503					7	3	3	0	0	0	0.0036431	1	7839	7839		155.95	123.17	1	16014000			7940	3385	4508	4543	7702	7702					0.0012305584086789167
EEHKEVFRA	9	Unmodified	_EEHKEVFRA_					0	0	0		REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	382.1964111328125	3	382.196367	1143.56727	-0.089876	-3.435E-05	0.073895	2.8242E-05	-0.015982	-6.1081E-06	382.1964256460258	22.098	0.26038	21.713	21.583	21.844	-0.38503					9	4	3	0	0	0	0.066823	1	7842	7842		53.317	43.166	1	15718000			7941	3385	4508	4543	7703	7703					0.0012305584086789167
EEHKPSAVA	9	Unmodified	_EEHKPSAVA_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V2065I|1|0.23|ENSG00000083857|chr4:186620393-186620393|C/T|missense_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	484.2459411621094	2	484.245806	966.47706	0.10949	5.302E-05	-1.9336	-0.00093636	-1.8242	-0.00088334	484.2457419142913	16.311	0.36533	15.969	15.839	16.204	-0.34183					11	6	3	0	0	0	0.14362	1	5505	5505		49.554	21.381	1	5295500			7942	1439	4509	4544	7704	7704					-0.0075199348757450934
EEHNFFLAP	9	Unmodified	_EEHNFFLAP_					0	0	0		ENSG00000104320|ENST00000265433|NBN;NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	HCT116MG_D190212_S1	1	552.2612915039062	2	552.261456	1102.50836	0.35939	0.00019848	-0.18758	-0.00010359	0.17181	9.4883E-05	552.26117949836	51.282	0.30884	51.282	51.091	51.4	0					11	5	3	0	0	0	0.01389	1	19588	19588		103.75	55.402	1	41175000			7943	1924	4510	4545	7705	7705					-0.03879420453495186
EEHNFFLAP	9	Unmodified	_EEHNFFLAP_					0	0	0		ENSG00000104320|ENST00000265433|NBN;NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	HCT116MG_D190212_S2	2	552.2615966796875	2	552.261456	1102.50836	0.35055	0.00019359	0.14165	7.8229E-05	0.4922	0.00027182	552.2614685622173	51.427	0.5138	51.249	51.018	51.532	-0.17869					31	9	5	0	0	0	0.0090481	1	19711	19711		115.69	71.834	1	340650000			7944	1924	4510	4545	7706	7706					-0.03879420453495186
EEHNFFLAP	9	Unmodified	_EEHNFFLAP_					0	0	0		ENSG00000104320|ENST00000265433|NBN;NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	HCT116MG_D190212_S3	3	552.262451171875	2	552.261456	1102.50836	0.39497	0.00021813	0.1226	6.7706E-05	0.51757	0.00028583	552.261438444067	51.622	0.52399	51.31	51.067	51.591	-0.31166					26	9	4	0	0	0	0.01389	1	19487	19487		103.75	59.89	1	100220000			7945	1924	4510	4545	7707	7707					-0.03879420453495186
EEHNFFLAP	9	Unmodified	_EEHNFFLAP_					0	0	0		ENSG00000104320|ENST00000265433|NBN;NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	HCT116MG_D190212_S4	4	552.2615356445312	2	552.261456	1102.50836	0.47492	0.00026228	0.12216	6.7464E-05	0.59708	0.00032974	552.261503781563	51.7	0.41579	51.35	51.15	51.566	-0.35028					15	7	3	0	0	0	0.01389	1	19245	19245		103.75	59.89	1	28097000			7946	1924	4510	4545	7708	7708					-0.03879420453495186
EEHNIVFMP	9	Unmodified	_EEHNIVFMP_					0	0	0		nc|ENSG00000100109|Q9UBB9-2|TFIP11;ENSG00000100109|ENST00000407690|TFIP11	nc|ENSG00000100109|Q9UBB9-2|TFIP11	nc|ENSG00000100109|Q9UBB9-2|TFIP11	MULTI-MSMS	HCT116MG_D190212_S1	1	558.2632446289062	2	558.263142	1114.51173	0.33762	0.00018848	0.026189	1.462E-05	0.3638	0.0002031	558.2631390209432	49.673	0.25838	49.673	49.543	49.802	0					6	4	2	0	0	0	0.035349	1	18962	18962		81.89	52.809	1	13121000			7947	1667	4511	4546	7709	7709					-0.04094493671118471
EEHNIVFMP	9	Unmodified	_EEHNIVFMP_					0	0	0		nc|ENSG00000100109|Q9UBB9-2|TFIP11;ENSG00000100109|ENST00000407690|TFIP11	nc|ENSG00000100109|Q9UBB9-2|TFIP11	nc|ENSG00000100109|Q9UBB9-2|TFIP11	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2642211914062	2	558.263142	1114.51173	-0.0031908	-1.7813E-06	-0.51371	-0.00028679	-0.51691	-0.00028857	558.2633253361956	49.839	0.30586	49.676	49.483	49.789	-0.16369					14	5	4	0	0	0	0.055677	1	19086	19086		71.922	46.523	1	43389000			7948	1667	4511	4546	7710	7710					-0.04094493671118471
EEHPGSRMTA	10	Unmodified	_EEHPGSRMTA_					0	0	0		nc|ENSG00000158062|Q5T124-5|UBXN11;nc|ENSG00000158062|Q5T124-3|UBXN11;nc|ENSG00000158062|Q5T124-8|UBXN11;nc|ENSG00000158062|Q5T124-4|UBXN11;nc|ENSG00000158062|Q5T124-2|UBXN11;ENSG00000158062|ENST00000374222|UBXN11	nc|ENSG00000158062|Q5T124-5|UBXN11	nc|ENSG00000158062|Q5T124-5|UBXN11	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7509765625	2	557.75093	1113.48731	0.13077	7.2938E-05	0.055427	3.0914E-05	0.1862	0.00010385	557.7510936806357	18.292	0.31359	17.929	17.747	18.061	-0.36313					15	5	4	0	0	0	0.6572	1	6284	6284		33.445	16.332	1	20925000			7949	4356	4512	4547	7711	7711					-0.0648975382464414
EEHQNHKE	8	Unmodified	_EEHQNHKE_					0	0	0		ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	MULTI-SECPEP	HCT116MG_D190212_S1	1	526.2527465820312	2	525.733594	1049.45264	0.49116	0.00025822	-0.38309	-0.0002014	0.10807	5.6817E-05	525.7332897749245	33.322	0.31054	33.322	33.141	33.452	0					8	5	2	0	0	0	0.30262	1	12277	12277		8.5933	0	1	16596000			7950	6698	4513	4548	7712	7712					-0.07011253641098847
EEHQSGFFSA	10	Unmodified	_EEHQSGFFSA_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	HCT116MG_D190212_S1	1	570.2453002929688	2	569.743628	1137.4727	0.12932	7.3681E-05	0.1662	9.4692E-05	0.29552	0.00016837	569.7435985260681	39.971	0.25972	39.971	39.813	40.073	0					7	4	2	0	0	0	0.055088	1	15030	15030		83.429	55.8	1	10973000			7951	2679	4514	4549	7713	7713					-0.09053502701112848
EEHQSGFFSA	10	Unmodified	_EEHQSGFFSA_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	HCT116MG_D190212_S2	2	569.7437744140625	2	569.743628	1137.4727	0.28449	0.00016209	-0.30935	-0.00017625	-0.024857	-1.4162E-05	569.7432780031601	40.011	0.41507	39.938	39.739	40.154	-0.072838					16	7	3	0	0	0	0.041964	1	15074	15074		93.166	67.767	1	30486000			7952	2679	4514	4549	7714	7714					-0.09053502701112848
EEHQSGFFSA	10	Unmodified	_EEHQSGFFSA_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-SECPEP	HCT116MG_D190212_S3	3	569.3145141601562	2	569.743628	1137.4727	0.32112	0.00018296	0.050866	2.898E-05	0.37199	0.00021194	570.2448167153838	40.283	0.20849	39.981	39.799	40.007	-0.30161					6	3	2	0	0	0	0.30738	1	14914	14914		9.3831	9.3831	1	3862800			7953	2679	4514	4549	7715	7715					-0.09053502701112848
EEHRGLLSI	9	Unmodified	_EEHRGLLSI_					0	0	0		ENSG00000138107|ENST00000369905|ACTR1A	ENSG00000138107|ENST00000369905|ACTR1A	ENSG00000138107|ENST00000369905|ACTR1A	MULTI-MSMS	HCT116MG_D190212_S2	2	527.288330078125	2	527.288005	1052.56146	0.42508	0.00022414	0.27096	0.00014287	0.69604	0.00036701	527.2880211024797	42.058	0.20737	41.99	41.861	42.068	-0.068199					6	3	2	0	0	0	0.026272	1	15938	15938		90.135	28.533	1	20312000			7954	3533	4515	4550	7716	7716					0.03727957329192577
EEHSLNKEA	9	Unmodified	_EEHSLNKEA_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;nc|ENSG00000137478|O94868-3|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MSMS	HCT116MG_D190212_S2	2	528.7517700195312	2	528.751453	1055.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.371	1	16.029	15.529	16.529	-0.34183								0	0	0	0.040848	1	5504	5504		72.968	42.265	1				7955	3480	4516	4551	7717	7717					-0.03717216184099925
EEHTAVYTA	9	Unmodified	_EEHTAVYTA_					0	0	0		ENST00000464528.5_1_17:1630890-1639119:+|nuORF;WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENST00000464528.5_1_17:1630890-1639119:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.7345886230469	2	510.735271	1019.45599	0.50936	0.00026015	-0.42281	-0.00021594	0.086549	4.4204E-05	510.7348667400724	24.021	0.20732	23.637	23.508	23.715	-0.38324					6	3	2	0	0	0	0.023611	1	8605	8605		92.822	68.802	1	11898000			7956	4950	4517	4552	7718	7718					-0.05296003587091036
EEHTHLDPH	9	Unmodified	_EEHTHLDPH_					0	0	0			REV__ABI3BP|p.K701Sfs*41|1|0.1|ENSG00000154175|chr3:100780137-100780137|T/-|frameshift_variant	REV__ABI3BP|p.K701Sfs*41|1|0.1|ENSG00000154175|chr3:100780137-100780137|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	557.74951171875	2	557.749244	1113.48394	0.25281	0.000141	0.432	0.00024095	0.68481	0.00038195	557.7494440958601	21.716	0.67447	21.331	20.857	21.531	-0.38503					24	12	3	0	0	0	0.13706	1	7649	7649		50.855	8.8995	1	24210000	+		7957	9827	4518	4553	7719	7719					-0.06826680606991431
EEHTKIYNSE	10	Unmodified	_EEHTKIYNSE_					0	0	0		tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	tr|U7SQV9|U7SQV9_FUSNUChromosomepartitionproteinSmcOS=FusobacteriumnucleatumCTI-5OX=1316586GN=smcPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	625.289306640625	2	625.288399	1248.56225	0.4912	0.00030714	0.10149	6.3461E-05	0.59269	0.0003706	625.2885708096353	25.293	0.62408	25.013	24.59	25.214	-0.27958					14	11	2	0	0	0	0.8392	1	8936	8936		8.7454	0.58988	1	1962900			7958	18396	4519	4554	7720	7720					-0.0520929281244662
EEIAASKCRRP	11	Unmodified	_EEIAASKCRRP_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MSMS	HCT116MG_D190212_S2	2	420.5215148925781	3	420.555678	1258.6452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.329	1	18.959	18.459	19.459	-0.3695								0	0	0	0.61789	1	6696	6696		34.79	9.6355	1				7959	2018	4520	4555	7721	7721					0.02622745434564422
EEIAETLAS	9	Unmodified	_EEIAETLAS_					0	0	0		nc|ENSG00000122188|Q8IWV1-2|LAX1;nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	MULTI-MSMS	HCT116MG_D190212_S3	3	962.4677124023438	1	962.467683	961.460406	0.68897	0.00066311	-0.15964	-0.00015365	0.52933	0.00050946	962.4674308269354	37.2	0.46843	36.899	36.665	37.133	-0.30137					16	8	3	0	0	0	0.016134	1	13759	13759		100.37	7.5494	1	32774000			7960	2752	4521	4556	7722	7722					-0.02186539164176793
EEIAETLAS	9	Unmodified	_EEIAETLAS_					0	0	0		nc|ENSG00000122188|Q8IWV1-2|LAX1;nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	nc|ENSG00000122188|Q8IWV1-2|LAX1	MULTI-MSMS	HCT116MG_D190212_S4	4	962.4681396484375	1	962.467683	961.460406	0.48106	0.000463	0.060064	5.781E-05	0.54112	0.00052081	962.4677276057608	37.247	0.35357	36.863	36.726	37.079	-0.3839					12	6	3	0	0	0	0.013464	1	13661	13661		104.8	11.977	1	12148000			7961	2752	4521	4556	7723	7723					-0.02186539164176793
EEICRKVTPP	10	Unmodified	_EEICRKVTPP_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MSMS	HCT116MG_D190212_S4	4	586.3082275390625	2	586.310623	1170.60669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.019	1	35.633	35.133	36.133	-0.38558								0	0	0	0.85468	1	13165	13165		21.747	3.6003	1				7962	3860	4522	4557	7724	7724					0.028214398000500296
EEIDIHNEF	9	Unmodified	_EEIDIHNEF_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MSMS	HCT116MG_D190212_S1	1	573.2591552734375	2	573.259111	1144.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.981	1	41.981	41.481	42.481	0								0	0	0	0.41664	1	15822	15822		32.786	12.332	1				7963	2344	4523	4558	7725	7725					-0.06280349386906892
EEIDIHNEF	9	Unmodified	_EEIDIHNEF_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-SECPEP	HCT116MG_D190212_S1	1	573.7749633789062	2	573.259111	1144.50367	0.49969	0.00028645	-0.077738	-4.4564E-05	0.42195	0.00024189	573.2587517852008	41.888	0.20855	41.888	41.758	41.966	0					5	3	2	0	0	0	0.20548	1	15764	15764		26.268	1.2772	1	6106200			7964	2344	4523	4558	7726	7726					-0.06280349386906892
EEIDIHNEF	9	Unmodified	_EEIDIHNEF_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	HCT116MG_D190212_S2	2	573.25927734375	2	573.259111	1144.50367	0.44257	0.00025371	0.27289	0.00015643	0.71546	0.00041014	573.2590078903218	41.903	0.31248	41.834	41.601	41.913	-0.068199					11	5	3	0	0	0	0.0094709	1	15827	15827		114.65	55.97	1	59590000			7965	2344	4523	4558	7727	7727					-0.06280349386906892
EEIDIHNEF	9	Unmodified	_EEIDIHNEF_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	HCT116MG_D190212_S3	3	573.2592163085938	2	573.259111	1144.50367	0.48588	0.00027854	0.28557	0.0001637	0.77145	0.00044224	573.2591808980228	42.161	0.31165	41.857	41.676	41.987	-0.30352					11	5	3	0	0	0	0.016701	1	15706	15706		99.799	53.778	1	11993000			7966	2344	4523	4558	7728	7728					-0.06280349386906892
EEIEAQEKA	9	Unmodified	_EEIEAQEKA_					0	0	0		ENST00000554535.2_1_14:35899543-35899834:+|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8	ENST00000554535.2_1_14:35899543-35899834:+|nuORF	ENST00000554535.2_1_14:35899543-35899834:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	523.7535400390625	2	523.753661	1045.49277	0.25331	0.00013267	0.12922	6.7681E-05	0.38253	0.00020035	523.7535515723933	20.185	0.20819	20.233	20.155	20.363	0.048107					6	3	2	0	0	0	0.064006	1	6992	6992		67.838	10.116	1	4249700			7967	2943	4524	4559	7729	7729					-0.02815751761181673
EEIEAQEKA	9	Unmodified	_EEIEAQEKA_					0	0	0		ENST00000554535.2_1_14:35899543-35899834:+|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8	ENST00000554535.2_1_14:35899543-35899834:+|nuORF	ENST00000554535.2_1_14:35899543-35899834:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	523.7537231445312	2	523.753661	1045.49277	0.38642	0.00020239	0.093488	4.8965E-05	0.4799	0.00025135	523.7532998040704	20.528	0.31199	20.326	20.196	20.508	-0.20133					8	5	2	0	0	0	0.17622	1	7047	7047		43.772	9.3707	1	2433200			7968	2943	4524	4559	7730	7730					-0.02815751761181673
EEIEAQIKA	9	Unmodified	_EEIEAQIKA_					0	0	0		nc|ENSG00000256950|O00233-2|PSMD9;ENSG00000110801|ENST00000541212|PSMD9;nc|ENSG00000256950|O00233-3|PSMD9	nc|ENSG00000256950|O00233-2|PSMD9	nc|ENSG00000256950|O00233-2|PSMD9	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.7545776367188	2	515.774396	1029.53424	0.42946	0.00022151	-0.43692	-0.00022535	-0.0074531	-3.8441E-06	515.7742199532044	31.818	0.46605	31.569	31.25	31.716	-0.24883					13	8	2	0	0	0	0.19273	1	11802	11802		29.082	0	1	17535000			7969	2263	4525	4560	7731	7731					0.02065428998139396
EEIEAQIKA	9	Unmodified	_EEIEAQIKA_					0	0	0		nc|ENSG00000256950|O00233-2|PSMD9;ENSG00000110801|ENST00000541212|PSMD9;nc|ENSG00000256950|O00233-3|PSMD9	nc|ENSG00000256950|O00233-2|PSMD9	nc|ENSG00000256950|O00233-2|PSMD9	MULTI-SECPEP	HCT116MG_D190212_S3	3	516.301025390625	2	515.774396	1029.53424	0.15728	8.1121E-05	-0.048135	-2.4827E-05	0.10914	5.6294E-05	515.774283390646	31.873	0.36447	31.603	31.326	31.69	-0.27028					15	6	3	0	0	0	0.23301	1	11652	11652		21.747	5.8995	1	9557000			7970	2263	4525	4560	7732	7732					0.02065428998139396
EEIEGFRY	8	Unmodified	_EEIEGFRY_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;DDX56|p.R429C|1|0.36|ENSG00000136271|chr7:44569138-44569138|G/A|missense_variant;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	521.7459106445312	2	521.745639	1041.47673	0.37202	0.0001941	-0.33329	-0.00017389	0.038733	2.0209E-05	521.7454529076541	42.097	0.26054	42.097	41.914	42.175	0					7	4	2	0	0	0	0.033555	1	15872	15872		141.83	70.693	1	23244000			7971	3408	4526	4561	7733	7733					-0.04235413207425154
EEIEGFRY	8	Unmodified	_EEIEGFRY_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;DDX56|p.R429C|1|0.36|ENSG00000136271|chr7:44569138-44569138|G/A|missense_variant;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	521.7457885742188	2	521.745639	1041.47673	0.37063	0.00019338	0.065708	3.4283E-05	0.43634	0.00022766	521.74560040526	42.008	0.41545	41.94	41.756	42.172	-0.068199					20	7	4	0	0	0	0.033555	1	15878	15878		141.83	66.898	1	223940000			7972	3408	4526	4561	7734	7734					-0.04235413207425154
EEIEGFRY	8	Unmodified	_EEIEGFRY_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;DDX56|p.R429C|1|0.36|ENSG00000136271|chr7:44569138-44569138|G/A|missense_variant;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1042.4854736328125	1	1042.484	1041.47673	0.79006	0.00082363	0.34773	0.0003625	1.1378	0.0011861	1042.4840849197492	42.007	0.25982	41.939	41.808	42.068	-0.068199					6	4	2	0	0	0	9.293E-05	1	15906	15906		252.8	119.1	1	26518000			7973	3408	4526	4561	7735	7735					-0.04235413207425154
EEIEGFRY	8	Unmodified	_EEIEGFRY_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;DDX56|p.R429C|1|0.36|ENSG00000136271|chr7:44569138-44569138|G/A|missense_variant;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	521.7459106445312	2	521.745639	1041.47673	0.38081	0.00019869	0.12741	6.6476E-05	0.50822	0.00026516	521.7456766546351	42.317	0.31266	42.013	41.832	42.144	-0.30352					11	5	3	0	0	0	0.064348	1	15767	15767		108	53.223	1	20797000			7974	3408	4526	4561	7736	7736					-0.04235413207425154
EEIEGFRY	8	Unmodified	_EEIEGFRY_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56;DDX56|p.R429C|1|0.36|ENSG00000136271|chr7:44569138-44569138|G/A|missense_variant;ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	521.74560546875	2	521.745639	1041.47673	0.33792	0.00017631	0.088534	4.6192E-05	0.42645	0.0002225	521.7457631264871	42.396	0.20771	42.02	41.891	42.098	-0.37565					5	3	2	0	0	0	0.46892	1	15603	15603		43.858	5.7071	1	5083000			7975	3408	4526	4561	7737	7737					-0.04235413207425154
EEIEGLISA	9	Unmodified	_EEIEGLISA_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	HCT116MG_D190212_S3	3	960.48876953125	1	960.488418	959.481142	0.77475	0.00074414	0.45025	0.00043246	1.225	0.0011766	960.4884950731961	48.292	0.31277	47.976	47.827	48.14	-0.31596					12	5	3	0	0	0	0.023611	1	18164	18164		92.822	11.209	1	12621000			7976	3079	4527	4562	7738	7738					-0.00021948784512915154
EEIEGLISA	9	Unmodified	_EEIEGLISA_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	HCT116MG_D190212_S4	4	960.4879760742188	1	960.488418	959.481142	0.50796	0.00048789	0.47498	0.00045621	0.98294	0.0009441	960.4886743834018	48.328	0.30508	47.961	47.78	48.085	-0.36728					11	5	3	0	0	0	0.023611	1	17883	17883		92.822	11.209	1	11931000			7977	3079	4527	4562	7739	7739					-0.00021948784512915154
EEIEGLISA	9	Unmodified	_EEIEGLISA_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MATCH	HCT116MG_D190212_S1	1		1	960.488418	959.481142	0.59624	0.00057268	-0.1849	-0.00017759	0.41135	0.00039509	960.4882765875576	47.97	0.20729	47.97	47.841	48.048	0	0.0012556	-0.00042022	NaN	92.822	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10008000			7978	3079	4527	4562							-0.00021948784512915154
EEIENGSSS	9	Unmodified	_EEIENGSSS_					0	0	0		PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant;ENSG00000146247|ENST00000275034|PHIP	PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant	PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	476.1985778808594	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2562	1	4.1672	3.6672	4.6672	-0.089082								0	0	0	0.7701	1	1348	1348		0.52476	0	1				7979	3943	4528	4563	7740	7740					-0.09429177100355446
EEIEVDSRVA	10	Unmodified	_EEIEVDSRVA_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	HCT116MG_D190212_S1	1	573.7871704101562	2	573.785492	1145.55643	0.51472	0.00029534	-0.055369	-3.177E-05	0.45935	0.00026357	573.7854399108418	31.215	0.20844	31.215	31.076	31.284	0					8	3	3	0	0	0	0.053614	1	11486	11486		84.522	30.689	1	6023900			7980	4827	4529	4564	7741	7741					-0.010523913240831462
EEIEVDSRVA	10	Unmodified	_EEIEVDSRVA_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	HCT116MG_D190212_S2	2	573.7858276367188	2	573.785492	1145.55643	0.58555	0.00033598	-0.089484	-5.1345E-05	0.49607	0.00028464	573.7852982080614	31.421	0.31003	31.172	30.992	31.302	-0.24883					12	5	3	0	0	0	0.023414	1	11598	11598		114.19	42.264	1	44025000			7981	4827	4529	4564	7742	7742					-0.010523913240831462
EEIEVDSRVA	10	Unmodified	_EEIEVDSRVA_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1;ENST00000477977.1_1_10:103920762-103923575:+|nuORF	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MSMS	HCT116MG_D190212_S3	3	573.7863159179688	2	573.785492	1145.55643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.58	1	31.31	30.81	31.81	-0.27028								0	0	0	0.21788	1	11542	11542		67.081	15.451	1				7982	4827	4529	4564	7743	7743					-0.010523913240831462
EEIFPSPPPP	10	Unmodified	_EEIFPSPPPP_					0	0	0		ENST00000468083.1_1_7:143078664-143079645:+|nuORF;ENSG00000159840|ENST00000322764|ZYX	ENST00000468083.1_1_7:143078664-143079645:+|nuORF	ENST00000468083.1_1_7:143078664-143079645:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	555.7294921875	2	555.279315	1108.54408	0.37478	0.00020811	-2.5855	-0.0014357	-2.2107	-0.0012276	555.2774011269732	27.682	0.3602	27.34	27.191	27.551	-0.34201					9	6	2	0	0	0	0.25317	1	10089	10089		39.957	14.558	1	10890000			7983	4425	4530	4565	7744	7744					-0.005853829964735269
EEIGHAQEA	9	Unmodified	_EEIGHAQEA_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2254333496094	2	492.225071	982.435589	0.28721	0.00014137	0.59733	0.00029402	0.88454	0.00043539	492.22512873124373	19.347	0.36421	18.978	18.836	19.2	-0.3695					16	6	3	0	0	0	0.055677	1	6722	6722		71.922	25.901	1	11189000			7984	950	4531	4566	7745	7745					-0.05633174246906947
EEIGHAQEA	9	Unmodified	_EEIGHAQEA_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	HCT116MG_D190212_S3	3	492.2250061035156	2	492.225071	982.435589	0.169	8.3184E-05	-0.14483	-7.1289E-05	0.024165	1.1895E-05	492.2248431606772	18.571	0.41664	18.648	18.413	18.83	0.076334					11	7	2	0	0	0	0.02327	1	6317	6317		93.166	34.487	1	5798200			7985	950	4531	4566	7746	7746					-0.05633174246906947
EEIGHAQEA	9	Unmodified	_EEIGHAQEA_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MSMS	HCT116MG_D190212_S4	4	492.2254333496094	2	492.225071	982.435589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.884	1	18.702	18.202	19.202	-0.18171								0	0	0	0.27628	1	6368	6368		41.84	3.8656	1				7986	950	4531	4566	7747	7747					-0.05633174246906947
EEIHATGF	8	Unmodified	_EEIHATGF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	HCT116MG_D190212_S1	1	452.2137451171875	2	452.213975	902.413397	0.10743	4.858E-05	-0.26399	-0.00011938	-0.15656	-7.0798E-05	452.2137089212976	34.154	0.52132	34.154	33.972	34.493	0					22	9	4	0	0	0	0.030201	1	12664	12664		144.66	70.26	1	97901000			7987	3707	4532	4567	7748	7748					-0.04171353924664345
EEIHATGF	8	Unmodified	_EEIHATGF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	HCT116MG_D190212_S1	1	903.4219360351562	1	903.420673	902.413397	0.774	0.00069925	0.38119	0.00034437	1.1552	0.0010436	903.4207864772915	34.154	0.26072	34.154	34.024	34.285	0					10	4	3	0	0	0	0.04808	1	12678	12678		125.62	44.012	1	17008000			7988	3707	4532	4567	7749	7749					-0.04171353924664345
EEIHATGF	8	Unmodified	_EEIHATGF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	HCT116MG_D190212_S2	2	452.2139892578125	2	452.213975	902.413397	0.26043	0.00011777	-0.086362	-3.9054E-05	0.17407	7.8715E-05	452.2138290065356	34.325	0.36343	34.15	33.967	34.331	-0.17512					19	6	4	0	0	0	0.057785	1	12754	12754		114.94	55.149	1	405840000			7989	3707	4532	4567	7750	7750					-0.04171353924664345
EEIHATGF	8	Unmodified	_EEIHATGF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	HCT116MG_D190212_S2	2	903.4207763671875	1	903.420673	902.413397	0.96747	0.00087403	-0.25822	-0.00023328	0.70925	0.00064075	903.4204170265377	34.325	0.36343	34.15	33.967	34.331	-0.17512					15	6	4	0	0	0	0.024532	1	12769	12769		198.52	60.932	1	153470000			7990	3707	4532	4567	7751	7751					-0.04171353924664345
EEIHATGF	8	Unmodified	_EEIHATGF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	HCT116MG_D190212_S3	3	452.21331787109375	2	452.213975	902.413397	0.028071	1.2694E-05	-0.29167	-0.0001319	-0.2636	-0.0001192	452.21369598246514	34.504	0.51954	34.207	34.077	34.596	-0.29707					21	9	4	0	0	0	0.057785	1	12703	12703		114.94	51.381	1	59701000			7991	3707	4532	4567	7752	7752					-0.04171353924664345
EEIHATGF	8	Unmodified	_EEIHATGF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	HCT116MG_D190212_S3	3	903.419921875	1	903.420673	902.413397	0.63777	0.00057617	-0.9494	-0.00085771	-0.31164	-0.00028154	903.4195274367128	34.504	0.25936	34.207	34.077	34.336	-0.29707					8	4	2	0	0	0	0.01858	1	12716	12716		154.46	69.107	1	10430000			7992	3707	4532	4567	7753	7753					-0.04171353924664345
EEIHATGF	8	Unmodified	_EEIHATGF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	HCT116MG_D190212_S4	4	452.2130432128906	2	452.213975	902.413397	0.22032	9.9633E-05	-0.93651	-0.0004235	-0.71619	-0.00032387	452.21317744421384	34.645	0.45541	34.259	34.087	34.543	-0.38558					12	8	3	0	0	0	0.044999	1	12664	12664		129.2	65.638	1	14727000			7993	3707	4532	4567	7754	7754					-0.04171353924664345
EEIHATGF	8	Unmodified	_EEIHATGF_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;NPEPPS|p.N337Ifs*37|1|0.16|ENSG00000141279|chr17:47587254-47587254|A/-|frameshift_variant;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MATCH	HCT116MG_D190212_S4	4		1	903.420673	902.413397	0.59435	0.00053694	-0.33515	-0.00030279	0.25919	0.00023416	903.420100575712	34.63	0.20166	34.244	34.138	34.34	-0.38558	0.055445	-8.6066E-05	NaN	154.46	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2593600			7994	3707	4532	4567							-0.04171353924664345
EEIHRKLSEA	10	Unmodified	_EEIHRKLSEA_					0	0	0		ENST00000392357.1_1_17:80010993-80011926:+|nuORF;ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1	ENST00000392357.1_1_17:80010993-80011926:+|nuORF	ENST00000392357.1_1_17:80010993-80011926:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	606.32275390625	2	606.322576	1210.6306	0.41342	0.00025067	0.091229	5.5314E-05	0.50465	0.00030598	606.3225291257439	18.918	0.26114	18.549	18.418	18.68	-0.3695					9	4	3	0	0	0	2.7718E-06	1	6536	6536		197.86	107.73	1	37522000			7995	5090	4533	4568	7755	7755					0.033709965581238066
EEIHRKLSEA	10	Unmodified	_EEIHRKLSEA_					0	0	0		ENST00000392357.1_1_17:80010993-80011926:+|nuORF;ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1	ENST00000392357.1_1_17:80010993-80011926:+|nuORF	ENST00000392357.1_1_17:80010993-80011926:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	606.3226318359375	2	606.322576	1210.6306	0.24619	0.00014927	-0.36018	-0.00021838	-0.11398	-6.9112E-05	606.3225340050416	17.686	0.26033	17.768	17.69	17.95	0.081358					6	4	2	0	0	0	0.077015	1	5983	5983		78.61	47.907	1	8849600			7996	5090	4533	4568	7756	7756					0.033709965581238066
EEIHRKLSEA	10	Unmodified	_EEIHRKLSEA_					0	0	0		ENST00000392357.1_1_17:80010993-80011926:+|nuORF;ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1	ENST00000392357.1_1_17:80010993-80011926:+|nuORF	ENST00000392357.1_1_17:80010993-80011926:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	606.322576	1210.6306	0.90011	0.00054575	-0.29691	-0.00018002	0.6032	0.00036573	606.322591978452	18.097	0.156	17.922	17.792	17.948	-0.17501	0.076992	1.779E-05	NaN	78.61	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2199000			7997	5090	4533	4568							0.033709965581238066
EEIIIAEY	8	Unmodified	_EEIIIAEY_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	HCT116MG_D190212_S2	2	979.4965209960938	1	979.498255	978.490978	0.34016	0.00033319	-0.48209	-0.00047221	-0.14193	-0.00013902	979.497480190982	49.927	0.25554	49.763	49.636	49.891	-0.16369					7	4	2	0	0	0	0.070772	1	19126	19126		101.72	23.738	1	57659000			7998	911	4534	4569	7757	7757					0.0008723922085209779
EEIIIAEY	8	Unmodified	_EEIIIAEY_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	HCT116MG_D190212_S3	3	979.4992065429688	1	979.498255	978.490978	0.61966	0.00060695	0.16554	0.00016214	0.78519	0.0007691	979.4984043106375	50.104	0.31232	49.788	49.654	49.967	-0.31524					11	5	3	0	0	0	0.09113	1	18888	18888		97.075	19.09	1	17078000			7999	911	4534	4569	7758	7758					0.0008723922085209779
EEIIIAEY	8	Unmodified	_EEIIIAEY_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	HCT116MG_D190212_S4	4	979.4992065429688	1	979.498255	978.490978	0.48272	0.00047282	-0.065171	-6.3835E-05	0.41754	0.00040898	979.4980772692363	50.121	0.41098	49.762	49.59	50.001	-0.35878					15	7	3	0	0	0	0.15965	1	18602	18602		81.613	10.898	1	21773000			8000	911	4534	4569	7759	7759					0.0008723922085209779
EEIIVKAM	8	Unmodified	_EEIIVKAM_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	HCT116MG_D190212_S2	2	466.7593688964844	2	466.759704	931.504854	0.23671	0.00011049	-0.31818	-0.00014851	-0.081468	-3.8026E-05	466.75948614146796	38.934	0.20697	38.85	38.754	38.961	-0.084618					5	3	2	0	0	0	0.076688	1	14659	14659		100.37	36.135	1	25473000			8001	2776	4535	4570	7760	7760					0.03636193448301128
EEIIVKAM	8	Unmodified	_EEIIVKAM_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MSMS	HCT116MG_D190212_S3	3	466.7598876953125	2	466.759704	931.504854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.223	1	38.922	38.422	39.422	-0.30137								0	0	0	0.11117	1	14556	14556		81.613	17.377	1				8002	2776	4535	4570	7761	7761					0.03636193448301128
EEIIVKAM	8	Unmodified	_EEIIVKAM_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	HCT116MG_D190212_S4	4	467.261474609375	2	466.759704	931.504854	-0.018268	-8.5266E-06	0.085665	3.9985E-05	0.067398	3.1459E-05	466.759643498655	39.313	0.1657	38.932	38.849	39.015	-0.38055					5	3	2	0	0	0	0.36164	1	14454	14454		53.576	6.6547	1	3281900			8003	2776	4535	4570	7762	7762					0.03636193448301128
EEIKAKRPP	9	Unmodified	_EEIKAKRPP_					0	0	0		ENSG00000138813|ENST00000326581|C4orf17;nc|nan|Q53FE4-2|C4orf17	ENSG00000138813|ENST00000326581|C4orf17	ENSG00000138813|ENST00000326581|C4orf17	MSMS	HCT116MG_D190212_S3	3	534.311767578125	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.47	1	29.233	28.733	29.733	-0.23655								0	0	0	0.7689	1	10707	10707		4.756	0.42677	1				8004	3591	4536	4571	7763	7763					0.08285120742925756
EEIKAKRPP	9	Unmodified	_EEIKAKRPP_					0	0	0		ENSG00000138813|ENST00000326581|C4orf17;nc|nan|Q53FE4-2|C4orf17	ENSG00000138813|ENST00000326581|C4orf17	ENSG00000138813|ENST00000326581|C4orf17	MSMS	HCT116MG_D190212_S4	4	534.3114624023438	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.386	1	35	34.5	35.5	-0.38606								0	0	0	0.7689	1	12958	12958		4.756	0	1				8005	3591	4536	4571	7764	7764					0.08285120742925756
EEIKALREA	9	Unmodified	_EEIKALREA_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	HCT116MG_D190212_S2	2	529.796142578125	2	529.795663	1057.57677	0.55661	0.00029489	0.18262	9.6754E-05	0.73923	0.00039164	529.7957913267418	27.145	0.21154	26.792	26.659	26.871	-0.35254					6	3	2	0	0	0	0.3453	1	9877	9877		33.445	8.4539	1	10604000			8006	6166	4537	4572	7765	7765					0.05028824126384279
EEIKALREA	9	Unmodified	_EEIKALREA_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	HCT116MG_D190212_S3	3	529.796142578125	2	529.795663	1057.57677	0.50158	0.00026573	0.48036	0.00025449	0.98194	0.00052023	529.79586417446	26.927	0.20837	26.758	26.599	26.807	-0.16933					5	3	2	0	0	0	0.12388	1	9697	9697		65.474	9.9709	1	3699700			8007	6166	4537	4572	7766	7766					0.05028824126384279
EEIKDFLLT	9	Unmodified	_EEIKDFLLT_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF;ENST00000422418.1_1_2:78019946-78019994:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	554.3008422851562	2	554.300247	1106.58594	0.52264	0.0002897	0.017856	9.8973E-06	0.54049	0.0002996	554.3003261690454	52.57	0.20507	52.57	52.485	52.69	0					8	3	3	0	0	0	0.012596	1	20134	20134		106.94	41.705	1	28668000			8008	5262	4538	4573	7767	7767					0.036911726920379806
EEIKDFLLT	9	Unmodified	_EEIKDFLLT_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF;ENST00000422418.1_1_2:78019946-78019994:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	554.300537109375	2	554.300247	1106.58594	0.32506	0.00018018	0.051488	2.854E-05	0.37655	0.00020872	554.3002244019526	52.819	0.41222	52.63	52.449	52.861	-0.18922					20	7	4	0	0	0	0.0096523	1	20284	20284		114.2	48.967	1	214560000			8009	5262	4538	4573	7768	7768					0.036911726920379806
EEIKDFLLT	9	Unmodified	_EEIKDFLLT_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF;ENST00000422418.1_1_2:78019946-78019994:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	554.2999877929688	2	554.300247	1106.58594	0.56636	0.00031394	-0.13552	-7.5117E-05	0.43085	0.00023882	554.3000869917157	53.002	0.4183	52.699	52.512	52.931	-0.30305					23	7	5	0	0	0	0.0059958	1	20036	20036		128.93	32.821	1	61442000			8010	5262	4538	4573	7769	7769					0.036911726920379806
EEIKDFLLT	9	Unmodified	_EEIKDFLLT_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF;ENST00000422418.1_1_2:78019946-78019994:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	554.3002319335938	2	554.300247	1106.58594	0.45133	0.00025017	-0.093535	-5.1846E-05	0.3578	0.00019833	554.3000209845547	53.031	0.41598	52.696	52.515	52.931	-0.33473					19	7	4	0	0	0	0.0096523	1	19791	19791		114.2	42.279	1	31043000			8011	5262	4538	4573	7770	7770					0.036911726920379806
EEIKDFLLTA	10	Unmodified	_EEIKDFLLTA_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	589.8191528320312	2	589.818804	1177.62306	0.72204	0.00042587	-0.050508	-2.9791E-05	0.67153	0.00039608	589.8187705577593	54.255	0.25604	54.255	54.077	54.333	0					13	4	4	0	0	0	0.019498	1	20805	20805		121.35	59.744	1	144440000			8012	5262	4539	4574	7771	7771					0.041348442378193795
EEIKDFLLTA	10	Unmodified	_EEIKDFLLTA_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	590.3294067382812	2	589.818804	1177.62306	0.60063	0.00035426	-0.049569	-2.9237E-05	0.55106	0.00032502	589.8187519151011	54.467	0.35693	54.278	54.15	54.507	-0.1894					22	6	5	0	0	0	0.013379	2	20944	20944;20974		135.86	61.664	1	1550499999.9999998			8013	5262	4539	4574	7772;7773	7772					0.041348442378193795
EEIKDFLLTA	10	Unmodified	_EEIKDFLLTA_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1178.631103515625	1	1178.63033	1177.62306	0.50264	0.00059243	0.041883	4.9365E-05	0.54452	0.00064179	1178.6302577158501	54.467	0.20377	54.278	54.15	54.354	-0.1894					9	3	3	0	0	0	0.028788	1	20980	20980		104.48	23.808	1	135950000			8014	5262	4539	4574	7774	7774					0.041348442378193795
EEIKDFLLTA	10	Unmodified	_EEIKDFLLTA_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	589.819091796875	2	589.818804	1177.62306	0.51682	0.00030483	0.033642	1.9843E-05	0.55046	0.00032467	589.8188178039399	54.615	0.36605	54.32	54.138	54.504	-0.29587					20	6	5	0	0	0	0.0089527	1	20696	20696		154.75	64.618	1	176840000			8015	5262	4539	4574	7775	7775					0.041348442378193795
EEIKDFLLTA	10	Unmodified	_EEIKDFLLTA_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1178.631103515625	1	1178.63033	1177.62306	0.493	0.00058106	0.029716	3.5024E-05	0.52271	0.00061609	1178.6305224334458	54.617	0.15681	54.321	54.19	54.347	-0.29587					6	2	3	0	0	0	0.031798	1	20707	20707		100.71	4.3421	1	6760300			8016	5262	4539	4574	7776	7776					0.041348442378193795
EEIKDFLLTA	10	Unmodified	_EEIKDFLLTA_					0	0	0		RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant;ENST00000529123.2_1_17:72199871-72200367:+|nuORF;ENSG00000172809|ENST00000311111|RPL38;ENST00000530646.1_1_17:72199871-72200367:+|nuORF	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	RPL38|p.D19Efs*16|1|0.05|ENSG00000172809|chr17:74204182-74204183|-/GATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	589.8189697265625	2	589.818804	1177.62306	0.75108	0.000443	-0.11521	-6.7952E-05	0.63587	0.00037505	589.8186836383479	54.594	0.31255	54.27	54.14	54.453	-0.32349					15	5	4	0	0	0	0.019498	1	20422	20422		121.35	58.773	1	81482000			8017	5262	4539	4574	7777	7777					0.041348442378193795
EEIKSGTTA	9	Unmodified	_EEIKSGTTA_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	468.23779296875	2	468.237647	934.460741	0.36171	0.00016937	-0.17133	-8.0222E-05	0.19038	8.9145E-05	468.2375300331638	17.074	0.20852	17.074	16.994	17.202	0					7	3	3	0	0	0	0.45867	1	5810	5810		19.257	19.257	1	5318800			8018	2330	4540	4575	7778	7778					-0.009111194443448767
EEIKSGTTA	9	Unmodified	_EEIKSGTTA_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	468.23785400390625	2	468.237647	934.460741	0.22623	0.00010593	0.12614	5.9065E-05	0.35237	0.00016499	468.2376549214877	17.458	0.41791	17.108	16.978	17.395	-0.34933					14	7	3	0	0	0	0.12205	1	5951	5951		53.833	23.196	1	40126000			8019	2330	4540	4575	7779	7779					-0.009111194443448767
EEIKSGTTA	9	Unmodified	_EEIKSGTTA_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	468.23748779296875	2	468.237647	934.460741	0.148	6.9297E-05	-0.014598	-6.8353E-06	0.1334	6.2462E-05	468.2375591395787	16.542	0.41617	16.627	16.445	16.861	0.085424					15	7	3	0	0	0	0.030723	1	5501	5501		85.642	39.621	1	9385200			8020	2330	4540	4575	7780	7780					-0.009111194443448767
EEIKSGTTA	9	Unmodified	_EEIKSGTTA_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	468.237647	934.460741	0.36171	0.00016937	-0.17133	-8.0222E-05	0.19038	8.9145E-05	468.2375300331638	17.074	0.20852	17.074	16.994	17.202	0	-0.017173	-0.00022091	NaN	53.833	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5318800			8021	2330	4540	4575							-0.009111194443448767
EEIKSLTA	8	Unmodified	_EEIKSLTA_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;ENST00000521939.5_1_5:167913503-167921691:+|nuORF;ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENSG00000113643|ENST00000231572|RARS1;ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	445.7450866699219	2	445.745108	889.475663	0.25012	0.00011149	0.06078	2.7093E-05	0.3109	0.00013858	445.74505876925366	29.243	0.31284	29.243	29.112	29.425	0					7	5	2	0	0	0	0.27593	1	10685	10685		61.357	13.012	1	12612000			8022	2399;8575	4541	4576	7781	7781					0.026503724236476955
EEIKSLTA	8	Unmodified	_EEIKSLTA_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;ENST00000521939.5_1_5:167913503-167921691:+|nuORF;ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENSG00000113643|ENST00000231572|RARS1;ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	445.7451171875	2	445.745108	889.475663	0.4101	0.0001828	-0.094885	-4.2294E-05	0.31522	0.00014051	445.74498722338836	29.705	0.25807	29.404	29.237	29.495	-0.30095					8	4	3	0	0	0	0.12671	1	10900	10900		88.954	27.596	1	53160000			8023	2399;8575	4541	4576	7782	7782					0.026503724236476955
EEIKSLTA	8	Unmodified	_EEIKSLTA_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;ENST00000521939.5_1_5:167913503-167921691:+|nuORF;ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENSG00000113643|ENST00000231572|RARS1;ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	890.484130859375	1	890.482939	889.475663	1.154	0.0010277	0.23144	0.0002061	1.3855	0.0012338	890.4832348513894	29.682	0.20648	29.382	29.289	29.495	-0.30095					5	3	2	0	0	0	0.079387	1	10905	10905		99.755	17.865	1	16657000			8024	2399;8575	4541	4576	7783	7783					0.026503724236476955
EEIKSLTA	8	Unmodified	_EEIKSLTA_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;ENST00000521939.5_1_5:167913503-167921691:+|nuORF;ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENSG00000113643|ENST00000231572|RARS1;ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	445.7450866699219	2	445.745108	889.475663	0.26319	0.00011732	-0.12351	-5.5054E-05	0.13968	6.2262E-05	445.74499948405474	29.711	0.31837	29.474	29.292	29.61	-0.23655					8	5	2	0	0	0	0.27593	1	10814	10814		61.357	13.012	1	11377000			8025	2399;8575	4541	4576	7784	7784					0.026503724236476955
EEILFKERA	9	Unmodified	_EEILFKERA_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	378.8764953613281	3	378.876634	1133.60807	0.026893	1.0189E-05	0.194	7.3501E-05	0.22089	8.369E-05	378.8766407228409	34.717	0.25866	34.559	34.399	34.657	-0.15834					9	4	3	0	0	0	0.12205	1	12936	12936		42.312	12.875	1	32855000			8026	4180	4542	4577	7785	7785					0.04661397160475644
EEILFKERA	9	Unmodified	_EEILFKERA_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	567.8113403320312	2	567.811313	1133.60807	0.33777	0.00019179	-0.013058	-7.4144E-06	0.32472	0.00018438	567.8112156043933	34.919	0.36402	34.622	34.388	34.752	-0.29707					16	6	4	0	0	0	0.0035183	1	12872	12872		157.8	58.04	1	50624000			8027	4180	4542	4577	7786	7786					0.04661397160475644
EEILFKERA	9	Unmodified	_EEILFKERA_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	378.87640380859375	3	378.876634	1133.60807	-0.17135	-6.4919E-05	-0.036723	-1.3913E-05	-0.20807	-7.8833E-05	378.87654387913943	34.916	0.36343	34.619	34.44	34.803	-0.29707					12	6	3	0	0	0	0.12205	1	12878	12878		42.312	18.511	1	16214000			8028	4180	4542	4577	7787	7787					0.04661397160475644
EEILFKERA	9	Unmodified	_EEILFKERA_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	568.3137817382812	2	567.811313	1133.60807	0.48972	0.00027807	-0.053635	-3.0455E-05	0.43608	0.00024761	567.8110995088449	35.038	0.25956	34.652	34.49	34.75	-0.38605					11	4	3	0	0	0	0.0043772	1	12817	12817		145.13	56.226	1	17510000			8029	4180	4542	4577	7788	7788					0.04661397160475644
EEILFKERA	9	Unmodified	_EEILFKERA_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	567.811313	1133.60807	0.41562	0.00023599	-0.070278	-3.9905E-05	0.34534	0.00019609	567.8110787509381	34.571	0.20774	34.571	34.441	34.649	0	-0.043796	-4.686E-05	NaN	157.8	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14122000			8030	4180	4542	4577							0.04661397160475644
EEILFKERA	9	Unmodified	_EEILFKERA_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	378.876634	1133.60807	0.051716	1.9594E-05	0.1642	6.2211E-05	0.21591	8.1805E-05	378.876583919262	35.052	0.25956	34.666	34.49	34.75	-0.38605	0.051203	0.00015177	NaN	42.312	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7655300			8031	4180	4542	4577							0.04661397160475644
EEILVEESPD	10	Unmodified	_EEILVEESPD_					0	0	0		ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	MSMS	HCT116MG_D190212_S4	4	580.2716064453125	2	580.271884	1158.52921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.714	1	18.533	18.033	19.033	-0.18052								0	0	0	0.92607	1	6300	6300		10.074	2.1638	1				8032	3415	4543	4578	7789	7789					-0.04370919655139005
EEINKHTT	8	Unmodified	_EEINKHTT_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	HCT116MG_D190212_S4	4	486.2433776855469	2	486.243264	970.471974	0.1252	6.0876E-05	0.74037	0.00036	0.86557	0.00042088	486.2435537264568	24.844	0.25944	24.575	24.393	24.653	-0.26881					6	4	2	0	0	0	0.33298	1	8783	8783		56.177	2.3442	1	3713200	+		8033	10645	4544	4579	7790	7790					-0.014442973502127643
EEINRQVTY	9	Unmodified	_EEINRQVTY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	576.2882080078125	2	576.288202	1150.56185	0.54753	0.00031554	-0.15902	-9.1644E-05	0.38851	0.00022389	576.2881765579158	28.034	0.20802	28.034	27.956	28.164	0					5	3	2	0	0	0	0.037825	1	10224	10224		80.676	53.047	1	7628300			8034	1439	4545	4580	7791	7791					-0.007406677416156526
EEINRQVTY	9	Unmodified	_EEINRQVTY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	576.2877807617188	2	576.288202	1150.56185	0.37284	0.00021486	-0.21488	-0.00012383	0.15796	9.1031E-05	576.2876094639274	28.437	0.20689	28.107	27.977	28.184	-0.32987					6	3	2	0	0	0	0.02327	1	10385	10385		93.166	54.551	1	22286000			8035	1439	4545	4580	7792	7792					-0.007406677416156526
EEINRQVTY	9	Unmodified	_EEINRQVTY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	576.2874755859375	2	576.288202	1150.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.487	1	28.281	27.781	28.781	-0.20593								0	0	0	0.41664	1	10311	10311		32.786	17.537	1				8036	1439	4545	4580	7793	7793					-0.007406677416156526
EEINTKEVA	9	Unmodified	_EEINTKEVA_					0	0	0		ENSG00000205922|ENST00000382349|ONECUT3;ENSG00000169856|ENST00000305901|ONECUT1;ENSG00000119547|ENST00000491143|ONECUT2	ENSG00000205922|ENST00000382349|ONECUT3	ENSG00000205922|ENST00000382349|ONECUT3	MULTI-SECPEP	HCT116MG_D190212_S2	2	516.7943115234375	2	516.764029	1031.5135	0.33242	0.00017178	0.16057	8.2975E-05	0.49299	0.00025476	517.2657271072543	25.262	0.20791	24.887	24.764	24.972	-0.37521					7	3	3	0	0	0	0.1898	1	9058	9058		31.268	3.6395	1	7211900			8037	6391	4546	4581	7794	7794					-0.0009916138151311316
EEINTKEVA	9	Unmodified	_EEINTKEVA_					0	0	0		ENSG00000205922|ENST00000382349|ONECUT3;ENSG00000169856|ENST00000305901|ONECUT1;ENSG00000119547|ENST00000491143|ONECUT2	ENSG00000205922|ENST00000382349|ONECUT3	ENSG00000205922|ENST00000382349|ONECUT3	MULTI-MSMS	HCT116MG_D190212_S3	3	516.7644653320312	2	516.764029	1031.5135	0.33237	0.00017176	-0.16787	-8.6751E-05	0.1645	8.5006E-05	516.7641315412934	25.006	0.36475	24.9	24.683	25.048	-0.10618					13	6	3	0	0	0	0.043159	1	8922	8922		78.06	30.312	1	5381300			8038	6391	4546	4581	7795	7795					-0.0009916138151311316
EEINTKEVA	9	Unmodified	_EEINTKEVA_					0	0	0		ENSG00000205922|ENST00000382349|ONECUT3;ENSG00000169856|ENST00000305901|ONECUT1;ENSG00000119547|ENST00000491143|ONECUT2	ENSG00000205922|ENST00000382349|ONECUT3	ENSG00000205922|ENST00000382349|ONECUT3	MULTI-MSMS	HCT116MG_D190212_S4	4	516.7645263671875	2	516.764029	1031.5135	0.4316	0.00022304	-0.23105	-0.0001194	0.20055	0.00010363	516.7639144187433	25.208	0.208	24.928	24.798	25.006	-0.27958					6	3	2	0	0	0	0.14362	1	8930	8930		49.554	7.7147	1	3585700			8039	6391	4546	4581	7796	7796					-0.0009916138151311316
EEIPKIFQI	9	Unmodified	_EEIPKIFQI_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	558.8185424804688	2	558.818607	1115.62266	0.44887	0.00025084	-0.082999	-4.6381E-05	0.36587	0.00020446	558.8184197413199	55.851	0.2072	55.665	55.535	55.742	-0.18565					8	3	3	0	0	0	0.0044301	1	21565	21565		144.35	25.456	1	52698000			8040	1193	4547	4582	7797	7797					0.06947469308602194
EEIPKIFQI	9	Unmodified	_EEIPKIFQI_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	558.81884765625	2	558.818607	1115.62266	0.47727	0.0002667	0.31653	0.00017689	0.7938	0.00044359	558.8185949149942	55.991	0.20888	55.704	55.571	55.779	-0.28773					10	3	4	0	0	0	0.01389	1	21268	21268		103.75	25.599	1	5572300			8041	1193	4547	4582	7798	7798					0.06947469308602194
EEIPTHSF	8	Unmodified	_EEIPTHSF_					0	0	0		nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2272033691406	2	480.227082	958.439611	0.32991	0.00015843	-0.098143	-4.7131E-05	0.23177	0.0001113	480.22697129377303	34.285	0.4145	34.11	33.967	34.382	-0.17511					13	7	3	0	0	0	0.070772	1	12782	12782		101.72	52.053	1	19194000			8042	4866	4548	4583	7799	7799					-0.04127084753190502
EEIPTHSF	8	Unmodified	_EEIPTHSF_					0	0	0		nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-MSMS	HCT116MG_D190212_S3	3	480.2265930175781	2	480.227082	958.439611	0.10186	4.8915E-05	-0.76977	-0.00036967	-0.66791	-0.00032075	480.22653423732106	34.518	0.25936	34.221	34.077	34.336	-0.29707					8	4	2	0	0	0	0.19622	1	12717	12717		74.396	40.209	1	3740500			8043	4866	4548	4583	7800	7800					-0.04127084753190502
EEIQETQTP	9	Unmodified	_EEIQETQTP_					0	0	0		ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	MSMS	HCT116MG_D190212_S3	3	537.7514038085938	2	537.751118	1073.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.66	1	25.532	25.032	26.032	-0.12795								0	0	0	0.35515	1	9171	9171		36.127	17.981	1				8044	4251	4549	4584	7801	7801					-0.046120556238065546
EEIQETQTP	9	Unmodified	_EEIQETQTP_					0	0	0		ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	MULTI-MSMS	HCT116MG_D190212_S4	4	537.751953125	2	537.751118	1073.48768	0.51181	0.00027523	-0.66337	-0.00035673	-0.15156	-8.1501E-05	537.7510651732532	25.694	0.2602	25.403	25.255	25.516	-0.29022					7	4	2	0	0	0	0.15273	1	9136	9136		47.749	20.12	1	2427700			8045	4251	4549	4584	7802	7802					-0.046120556238065546
EEIQGLTTA	9	Unmodified	_EEIQGLTTA_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	961.4523315429688	1	961.483667	960.476391	0.74339	0.00071476	0.073364	7.0538E-05	0.81675	0.00078529	961.4837872077248	36.495	0.31099	36.37	36.229	36.54	-0.12512					7	5	2	0	0	0	0.19936	1	13669	13669		27.629	13.723	1	15351000			8046	1262	4550	4585	7803	7803					-0.005428329273058807
EEIQGLTTA	9	Unmodified	_EEIQGLTTA_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	HCT116MG_D190212_S3	3	481.2462463378906	2	481.245472	960.476391	0.11418	5.4946E-05	0.005011	2.4115E-06	0.11919	5.7358E-05	481.2455521178044	36.68	0.36395	36.379	36.249	36.613	-0.30113					8	6	2	0	0	0	0.041798	1	13581	13581		78.728	28.795	1	6213700			8047	1262	4550	4585	7804	7804					-0.005428329273058807
EEIQGLTTA	9	Unmodified	_EEIQGLTTA_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	HCT116MG_D190212_S3	3	961.4847412109375	1	961.483667	960.476391	0.56744	0.00054559	0.65224	0.00062712	1.2197	0.0011727	961.4845109040733	36.68	0.36439	36.379	36.145	36.509	-0.30113					13	6	3	0	0	0	0.047849	1	13585	13585		75.761	23.492	1	11501000			8048	1262	4550	4585	7805	7805					-0.005428329273058807
EEIQGLTTA	9	Unmodified	_EEIQGLTTA_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	HCT116MG_D190212_S4	4	961.4845581054688	1	961.483667	960.476391	0.58924	0.00056655	1.1877	0.001142	1.777	0.0017085	961.4853287467336	36.742	0.41266	36.357	36.126	36.539	-0.38486					10	7	2	0	0	0	0.066823	1	13503	13503		66.457	24.617	1	7143700			8049	1262	4550	4585	7806	7806					-0.005428329273058807
EEIQGTKDA	9	Unmodified	_EEIQGTKDA_					0	0	0		nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-3|PALLD	nc|ENSG00000129116|Q8WX93-3|PALLD	MULTI-MSMS	HCT116MG_D190212_S2	2	495.7403564453125	2	495.740554	989.466554	-0.01246	-6.1769E-06	0.30242	0.00014992	0.28996	0.00014374	495.7406403264833	18.398	0.36538	18.035	17.904	18.269	-0.36325					9	6	2	0	0	0	0.39784	1	6340	6340		22.736	5.6234	1	33102000			8050	9457	4551	4586	7807	7807					-0.028600209326668846
EEIQGTKDA	9	Unmodified	_EEIQGTKDA_					0	0	0		nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-3|PALLD	nc|ENSG00000129116|Q8WX93-3|PALLD	MULTI-MSMS	HCT116MG_D190212_S3	3	495.74066162109375	2	495.740554	989.466554	-0.01256	-6.2267E-06	0.43805	0.00021716	0.42549	0.00021093	495.7407410373297	17.634	0.72865	17.716	17.325	18.054	0.081358					16	13	3	0	0	0	0.014023	1	5938	5938		103.42	21.806	1	19075000			8051	9457	4551	4586	7808	7808					-0.028600209326668846
EEIQKKLEAA	10	Unmodified	_EEIQKKLEAA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF;nc|ENSG00000015592|Q9H169-3|STMN4;ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2;nc|ENSG00000015592|Q9H169|STMN4;nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S1	1	579.822021484375	2	579.821878	1157.6292	0.46979	0.0002724	-0.079872	-4.6312E-05	0.38992	0.00022608	579.8218383710384	25.587	0.26109	25.587	25.457	25.718	0					10	4	3	0	0	0	0.023522	1	9232	9232		139.38	62.553	1	23498000			8052	2583	4552	4587	7809	7809					0.056693624693252787
EEIQKKLEAA	10	Unmodified	_EEIQKKLEAA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF;nc|ENSG00000015592|Q9H169-3|STMN4;ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2;nc|ENSG00000015592|Q9H169|STMN4;nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S2	2	579.8220825195312	2	579.821878	1157.6292	0.6218	0.00036053	0.012517	7.2574E-06	0.63432	0.00036779	579.8218081216897	25.947	0.36386	25.578	25.446	25.81	-0.36914					17	6	4	0	0	0	0.015812	1	9373	9373		158.08	57.368	1	178760000			8053	2583	4552	4587	7810	7810					0.056693624693252787
EEIQKKLEAA	10	Unmodified	_EEIQKKLEAA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF;nc|ENSG00000015592|Q9H169-3|STMN4;ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2;nc|ENSG00000015592|Q9H169|STMN4;nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S3	3	580.3233032226562	2	579.821878	1157.6292	0.5576	0.00032331	-0.083901	-4.8648E-05	0.4737	0.00027466	579.8217887182279	25.746	0.36475	25.618	25.442	25.807	-0.12795					16	6	4	0	0	0	0.014225	1	9205	9205		161.44	46.948	1	51352000			8054	2583	4552	4587	7811	7811					0.056693624693252787
EEIQKKLEAA	10	Unmodified	_EEIQKKLEAA_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF;nc|ENSG00000015592|Q9H169-3|STMN4;ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2;nc|ENSG00000015592|Q9H169|STMN4;nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S4	4	579.8218383789062	2	579.821878	1157.6292	0.27779	0.00016107	-0.025114	-1.4561E-05	0.25267	0.0001465	579.8218543211472	25.936	0.26019	25.646	25.516	25.776	-0.29022					11	4	3	0	0	0	0.021997	1	9224	9224		143.21	56.881	1	21738000			8055	2583	4552	4587	7812	7812					0.056693624693252787
EEIQSFIY	8	Unmodified	_EEIQSFIY_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-MSMS	HCT116MG_D190212_S3	3	514.7503662109375	2	514.75039	1027.48623	0.38947	0.00020048	-0.2031	-0.00010454	0.18637	9.5936E-05	514.750162748547	53.328	0.31386	53.025	52.826	53.139	-0.30305					9	5	2	0	0	0	0.31873	1	20201	20201		57.471	13.613	1	4497800			8056	1996	4553	4588	7813	7813					-0.02641644921891384
EEIQSFIY	8	Unmodified	_EEIQSFIY_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-MSMS	HCT116MG_D190212_S4	4	514.7506103515625	2	514.75039	1027.48623	0.28877	0.00014864	-0.44847	-0.00023085	-0.15971	-8.221E-05	514.750069336303	53.309	0.31264	52.974	52.879	53.191	-0.33473					8	5	2	0	0	0	0.23195	1	19929	19929		67.344	25.249	1	2265100			8057	1996	4553	4588	7814	7814					-0.02641644921891384
EEIQTLARA	9	Unmodified	_EEIQTLARA_					0	0	0		ENST00000193403.10_3_14:69445762-69445954:-|nuORF	ENST00000193403.10_3_14:69445762-69445954:-|nuORF	ENST00000193403.10_3_14:69445762-69445954:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7804565429688	2	515.780013	1029.54547	0.16529	8.5255E-05	0.28269	0.00014581	0.44798	0.00023106	515.7801117597497	32.61	0.26063	32.396	32.219	32.48	-0.21328					8	4	3	0	0	0	0.030723	1	12082	12082		85.642	17.561	1	31526000			8058	6721	4554	4589	7815	7815					0.03188251092274186
EEIQTLARA	9	Unmodified	_EEIQTLARA_					0	0	0		ENST00000193403.10_3_14:69445762-69445954:-|nuORF	ENST00000193403.10_3_14:69445762-69445954:-|nuORF	ENST00000193403.10_3_14:69445762-69445954:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7802734375	2	515.780013	1029.54547	0.39848	0.00020553	0.21287	0.00010979	0.61135	0.00031532	515.7800102807531	32.663	0.41668	32.378	32.144	32.56	-0.28511					10	7	2	0	0	0	0.030723	1	12003	12003		85.642	14.508	1	16636000			8059	6721	4554	4589	7816	7816					0.03188251092274186
EEIQTLARA	9	Unmodified	_EEIQTLARA_					0	0	0		ENST00000193403.10_3_14:69445762-69445954:-|nuORF	ENST00000193403.10_3_14:69445762-69445954:-|nuORF	ENST00000193403.10_3_14:69445762-69445954:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7798461914062	2	515.780013	1029.54547	0.30835	0.00015904	0.0085264	4.3978E-06	0.31688	0.00016344	515.7799240076423	32.77	0.25961	32.39	32.26	32.52	-0.37924					7	4	2	0	0	0	0.030723	1	11955	11955		85.642	14.508	1	9843900			8060	6721	4554	4589	7817	7817					0.03188251092274186
EEIRANVA	8	Unmodified	_EEIRANVA_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	HCT116MG_D190212_S1	1	451.24053955078125	2	451.240524	900.466495	0.18178	8.2027E-05	0.28484	0.00012853	0.46662	0.00021056	451.24062048723385	24.281	0.31424	24.281	24.098	24.412	0					7	5	2	0	0	0	0.11121	1	8693	8693		92.491	20.569	1	8339500			8061	3491	4555	4590	7818	7818					0.012280238579819525
EEIRANVA	8	Unmodified	_EEIRANVA_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	HCT116MG_D190212_S2	2	901.4735717773438	1	901.473771	900.466495	0.96043	0.0008658	0.088895	8.0136E-05	1.0493	0.00094594	901.4736519812114	24.698	0.20859	24.318	24.187	24.396	-0.38003					6	3	2	0	0	0	0.054052	1	8864	8864		118.89	19.096	1	16311000			8062	3491	4555	4590	7819	7819					0.012280238579819525
EEIRANVA	8	Unmodified	_EEIRANVA_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	HCT116MG_D190212_S2	2	451.2403869628906	2	451.240524	900.466495	0.17309	7.8107E-05	0.27401	0.00012364	0.4471	0.00020175	451.2405041700997	24.698	0.41683	24.318	24.082	24.499	-0.38003					16	7	3	0	0	0	0.057078	1	8865	8865		115.69	23.201	1	65871000			8063	3491	4555	4590	7820	7820					0.012280238579819525
EEIRANVA	8	Unmodified	_EEIRANVA_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	HCT116MG_D190212_S3	3	451.2406005859375	2	451.240524	900.466495	0.0098728	4.455E-06	0.21587	9.7407E-05	0.22574	0.00010186	451.2405568626092	24.295	0.4682	24.233	24.051	24.519	-0.061449					20	8	4	0	0	0	0.057078	1	8621	8621		115.69	23.201	1	30446000			8064	3491	4555	4590	7821	7821					0.012280238579819525
EEIRANVA	8	Unmodified	_EEIRANVA_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	HCT116MG_D190212_S4	4	451.24078369140625	2	451.240524	900.466495	0.48999	0.0002211	-0.15854	-7.1542E-05	0.33145	0.00014956	451.2403695333031	24.532	0.31103	24.263	24.134	24.445	-0.26881					11	5	3	0	0	0	0.057078	1	8652	8652		115.69	23.201	1	11169000			8065	3491	4555	4590	7822	7822					0.012280238579819525
EEIRDDKK	8	Unmodified	_EEIRDDKK_					0	0	0			REV__nc|ENSG00000082805|Q8IUD2-5|ERC1	REV__nc|ENSG00000082805|Q8IUD2-5|ERC1	MULTI-SECPEP	HCT116MG_D190212_S1	1	516.3756713867188	2	516.769645	1031.52474	0.49046	0.00025345	-0.80461	-0.0004158	-0.31415	-0.00016234	516.7693460003769	17.996	0.20865	17.996	17.828	18.037	0					5	3	2	0	0	0	0.31507	1	6127	6127		5.2307	0	1	1890700	+		8066	10893	4556	4591	7823	7823					0.010236607125989394
EEIRHMFHVA	10	Unmodified	_EEIRHMFHVA_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	423.5445861816406	3	423.545002	1267.61318	-0.0083056	-3.5178E-06	-0.13217	-5.5981E-05	-0.14048	-5.9498E-05	423.8793011775349	33.922	0.26125	33.922	33.763	34.024	0					6	4	2	0	0	0	0.68309	1	12594	12594		21.799	15.608	1	5274500			8067	19	4557	4592	7824	7824					-0.009926222485773906
EEIRHMFHVA	10	Unmodified	_EEIRHMFHVA_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	423.5447998046875	3	423.545002	1267.61318	0.021683	9.1837E-06	-0.44911	-0.00019022	-0.42742	-0.00018103	423.54478985009297	34.066	0.41517	33.89	33.76	34.175	-0.17512					9	7	2	0	0	0	0.019252	1	12668	12668		121.93	93.748	1	72782000			8068	19	4557	4592	7825	7825					-0.009926222485773906
EEIRHMFHVA	10	Unmodified	_EEIRHMFHVA_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	635.3161010742188	2	634.813864	1267.61318	0.40166	0.00025498	-0.18378	-0.00011667	0.21787	0.00013831	634.8136486968212	34.066	0.31089	33.89	33.657	33.967	-0.17512					7	5	2	0	0	0	0.02986	2	12673	12673;12687		117.76	87.92	1	47489000			8069	19	4557	4592	7826;7827	7826					-0.009926222485773906
EEIRHMFHVA	10	Unmodified	_EEIRHMFHVA_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	423.544921875	3	423.545002	1267.61318	0.1332	5.6415E-05	-0.18533	-7.8498E-05	-0.052138	-2.2083E-05	423.54486484750817	34.244	0.2601	33.949	33.819	34.079	-0.29419					10	4	3	0	0	0	0.11595	1	12622	12622		70.929	58.073	1	8092900			8070	19	4557	4592	7828	7828					-0.009926222485773906
EEIRHMFHVA	10	Unmodified	_EEIRHMFHVA_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	634.8143310546875	2	634.813864	1267.61318	0.52934	0.00033604	0.237	0.00015045	0.76635	0.00048649	634.8136227734365	34.244	0.20809	33.949	33.819	34.027	-0.29419					6	3	2	0	0	0	0.51975	1	12623	12623		32.037	21.238	1	5612500			8071	19	4557	4592	7829	7829					-0.009926222485773906
EEIRHMFHVA	10	Unmodified	_EEIRHMFHVA_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	634.813864	1267.61318	0.68943	0.00043766	-0.19816	-0.0001258	0.49127	0.00031187	634.8137627600013	33.926	0.15686	33.926	33.815	33.972	0	0.0043149	-9.2995E-05	NaN	117.76	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2637300			8072	19	4557	4592							-0.009926222485773906
EEIRKTFNI	9	Unmodified	_EEIRKTFNI_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-MSMS	HCT116MG_D190212_S2	2	575.3173828125	2	575.316763	1148.61897	0.36669	0.00021096	0.24149	0.00013893	0.60818	0.00034989	575.818156183268	36.873	0.25768	36.758	36.602	36.859	-0.11478					8	4	2	0	0	0	0.022991	1	13827	13827		100.71	32.87	1	22723000			8073	2393	4558	4593	7830	7830					0.05060799534749094
EEIRKTFNI	9	Unmodified	_EEIRKTFNI_					0	0	0		nc|ENSG00000113558|P63208-2|SKP1;ENSG00000113558|ENST00000353411|SKP1	nc|ENSG00000113558|P63208-2|SKP1	nc|ENSG00000113558|P63208-2|SKP1	MULTI-MSMS	HCT116MG_D190212_S3	3	575.3170776367188	2	575.316763	1148.61897	0.47186	0.00027147	0.78719	0.00045288	1.259	0.00072435	575.3169063905925	37.096	0.26029	36.795	36.665	36.925	-0.30137					9	4	3	0	0	0	0.095731	1	13756	13756		55.503	5.5697	1	9639200			8074	2393	4558	4593	7831	7831					0.05060799534749094
EEISGIVEV	9	Unmodified	_EEISGIVEV_					0	0	0		ENSG00000106399|ENST00000223129|RPA3	ENSG00000106399|ENST00000223129|RPA3	ENSG00000106399|ENST00000223129|RPA3	MULTI-MSMS	HCT116MG_D190212_S2	2	974.50439453125	1	974.504068	973.496792	0.84456	0.00082303	2.3817	0.002321	3.2263	0.003144	974.5038457601007	48.456	0.35534	48.312	48.134	48.49	-0.1437					13	6	3	0	0	0	0.050578	1	18514	18514		74.423	15.744	1	150770000			8075	2075	4559	4594	7832	7832					0.008983377325307629
EEISGIVEV	9	Unmodified	_EEISGIVEV_					0	0	0		ENSG00000106399|ENST00000223129|RPA3	ENSG00000106399|ENST00000223129|RPA3	ENSG00000106399|ENST00000223129|RPA3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	974.504068	973.496792	0.89792	0.00087503	0.25984	0.00025322	1.1578	0.0011282	974.5038215809801	48.638	0.25927	48.322	48.14	48.399	-0.31596	0.0046666	-0.00054352	NaN	74.423	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5598900			8076	2075	4559	4594							0.008983377325307629
EEISGVAF	8	Unmodified	_EEISGVAF_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;nc|ENSG00000243156|Q7RTP6-5|MICAL3;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000133816|O94851-5|MICAL2;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;ENSG00000243156|ENST00000441493|MICAL3	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	HCT116MG_D190212_S2	2	851.48583984375	1	851.414525	850.407249	1.0766	0.00091662	0.23295	0.00019834	1.3095	0.001115	851.4145772276727	47.794	0.20655	47.662	47.532	47.738	-0.13281					5	3	2	0	0	0	0.1682	1	18224	18224		67.035	26.587	1	9421700			8077	9464	4560	4595	7833	7833					-0.023938721561876264
EEISGVAF	8	Unmodified	_EEISGVAF_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;nc|ENSG00000243156|Q7RTP6-5|MICAL3;MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant;MICAL3|p.R1499Gfs*106|7|0.44|ENSG00000243156|chr22:17818166-17818166|G/-|frameshift_variant;MICAL3|p.A1313Lfs*17|1|0.24|ENSG00000243156|chr22:17818727-17818727|G/-|frameshift_variant;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000133816|O94851-5|MICAL2;MICAL2|p.E821Kfs*48|1|0.07|ENSG00000133816|chr11:12242336-12242337|AG/-|frameshift_variant;ENSG00000243156|ENST00000441493|MICAL3	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH	HCT116MG_D190212_S3	3		1	851.414525	850.407249	0.58588	0.00049882	0.14865	0.00012656	0.73453	0.00062539	851.4147291597232	47.983	0.20864	47.667	47.566	47.775	-0.31596	0.0028289	-8.8853E-06	NaN	67.035	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1418100			8078	9464	4560	4595							-0.023938721561876264
EEISHLISF	9	Unmodified	_EEISHLISF_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	537.777099609375	2	537.776939	1073.53933	0.55684	0.00029946	0.18006	9.6831E-05	0.7369	0.00039629	537.7769560225203	53.076	0.20504	53.076	52.948	53.153	0					5	3	2	0	0	0	0.0063744	1	20322	20322		125.62	51.202	1	22104000			8079	2330	4561	4596	7834	7834					0.005497328607589225
EEISHLISF	9	Unmodified	_EEISHLISF_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7771606445312	2	537.776939	1073.53933	0.32803	0.00017641	0.0031117	1.6734E-06	0.33115	0.00017808	537.7768286168546	53.289	0.3609	53.1	52.913	53.274	-0.18922					18	6	4	0	0	0	0.0040473	1	20491	20491		149.99	52.92	1	151040000			8080	2330	4561	4596	7835	7835					0.005497328607589225
EEISHLISF	9	Unmodified	_EEISHLISF_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7764892578125	2	537.776939	1073.53933	0.58997	0.00031727	-0.28877	-0.00015529	0.3012	0.00016198	537.7767151692004	53.517	0.31342	53.213	53.035	53.348	-0.30305					13	5	3	0	0	0	0.0054498	1	20248	20248		133.7	78.928	1	12077000			8081	2330	4561	4596	7836	7836					0.005497328607589225
EEISHLISF	9	Unmodified	_EEISHLISF_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	537.777099609375	2	537.776939	1073.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.565	1	53.23	52.73	53.73	-0.33473								0	0	0	0.026974	1	20002	20002		85.357	39.336	1				8082	2330	4561	4596	7837	7837					0.005497328607589225
EEISVKHLP	9	Unmodified	_EEISVKHLP_					0	0	0		nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;ENST00000594207.1_1_19:41774132-41786840:+|nuORF	nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1	MULTI-MSMS	HCT116MG_D190212_S2	2	526.29248046875	2	526.292756	1050.57096	0.54554	0.00028711	0.043461	2.2873E-05	0.589	0.00030999	526.2926382892124	32.874	0.51796	32.663	32.43	32.948	-0.21135					11	9	2	0	0	0	0.034046	1	12168	12168		82.529	32.596	1	24543000			8083	2001	4562	4597	7838	7838					0.04769725614710296
EEITGTQPP	9	Unmodified	_EEITGTQPP_					0	0	0		nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant	nc|ENSG00000141503|Q8N4C8-2|MINK1	nc|ENSG00000141503|Q8N4C8-2|MINK1	MULTI-MSMS	HCT116MG_D190212_S3	3	486.2377014160156	2	486.237647	970.460741	0.30269	0.00014718	0.73905	0.00035936	1.0417	0.00050654	486.23742610070445	28.588	0.62565	28.382	27.916	28.541	-0.20593					23	11	4	0	0	0	0.22969	1	10359	10359		38.151	11.268	1	3554000			8084	3723	4563	4598	7839	7839					-0.025671194443361856
EEITLSRGA	9	Unmodified	_EEITLSRGA_					0	0	0		TANGO6|p.R252I|1|0.39|ENSG00000103047|chr16:68862964-68862964|G/T|missense_variant	TANGO6|p.R252I|1|0.39|ENSG00000103047|chr16:68862964-68862964|G/T|missense_variant	TANGO6|p.R252I|1|0.39|ENSG00000103047|chr16:68862964-68862964|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	488.2590637207031	2	488.258914	974.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.595	1	29.294	28.794	29.794	-0.30095								0	0	0	0.24841	1	10847	10847		43.858	3.4097	1				8085	18256	4564	4599	7840	7840					0.015002756839066933
EEITLSRGA	9	Unmodified	_EEITLSRGA_					0	0	0		TANGO6|p.R252I|1|0.39|ENSG00000103047|chr16:68862964-68862964|G/T|missense_variant	TANGO6|p.R252I|1|0.39|ENSG00000103047|chr16:68862964-68862964|G/T|missense_variant	TANGO6|p.R252I|1|0.39|ENSG00000103047|chr16:68862964-68862964|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	488.2590637207031	2	488.258914	974.503274	0.27868	0.00013607	0.69452	0.0003391	0.9732	0.00047517	488.2591843351476	29.607	0.313	29.37	29.187	29.5	-0.23655					11	5	3	0	0	0	0.063511	1	10764	10764		68.081	9.4019	1	10404000			8086	18256	4564	4599	7841	7841					0.015002756839066933
EEITLSRGA	9	Unmodified	_EEITLSRGA_					0	0	0		TANGO6|p.R252I|1|0.39|ENSG00000103047|chr16:68862964-68862964|G/T|missense_variant	TANGO6|p.R252I|1|0.39|ENSG00000103047|chr16:68862964-68862964|G/T|missense_variant	TANGO6|p.R252I|1|0.39|ENSG00000103047|chr16:68862964-68862964|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	488.2589111328125	2	488.258914	974.503274	-0.11371	-5.5521E-05	0.9637	0.00047053	0.84998	0.00041501	488.25931575957065	29.72	0.31198	29.371	29.241	29.553	-0.34921					9	5	2	0	0	0	0.12994	1	10751	10751		52.268	6.2474	1	6174500			8087	18256	4564	4599	7842	7842					0.015002756839066933
EEIWNDFREA	10	Unmodified	_EEIWNDFREA_					0	0	0		ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-3|METAP2;METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;nc|ENSG00000111142|P50579-2|METAP2	ENSG00000111142|ENST00000323666|METAP2	ENSG00000111142|ENST00000323666|METAP2	MSMS	HCT116MG_D190212_S3	3	655.0514526367188	2	654.796392	1307.57823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.725	1	48.409	47.909	48.909	-0.31596								0	0	0	0.57395	1	18334	18334		43.982	18.991	1				8088	2273	4565	4600	7843	7843					-0.06325586575553643
EEKADYVTA	9	Unmodified	_EEKADYVTA_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-MSMS	HCT116MG_D190212_S3	3	513.2428588867188	2	513.242929	1024.47131	0.14388	7.3846E-05	-0.14716	-7.5527E-05	-0.0032763	-1.6815E-06	513.2427518205113	24.451	0.26025	24.367	24.237	24.497	-0.083694					7	4	2	0	0	0	0.30117	1	8713	8713		30.637	5.2372	1	5092100			8089	6473	4566	4601	7844	7844					-0.03995136789899334
EEKANETAQ	9	Unmodified	_EEKANETAQ_					0	0	0			REV__ENSG00000254772|ENST00000329251|EEF1G	REV__ENSG00000254772|ENST00000329251|EEF1G	MSMS	HCT116MG_D190212_S2	2	510.2351379394531	2	510.235635	1018.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.008	1	29.723	29.223	30.223	-0.28453								0	0	0	0.76655	1	11015	11015		13.042	0.80181	1		+		8090	14391	4567	4602	7845	7845					-0.05177208938039257
EEKARLLIGL	10	Unmodified	_EEKARLLIGL_					0	0	0		nc|ENSG00000007202|Q14667-3|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-3|BLTP2	nc|ENSG00000007202|Q14667-3|BLTP2	MULTI-MSMS	HCT116MG_D190212_S4	4	571.3509521484375	2	571.350606	1140.68666	0.57342	0.00032762	-0.60599	-0.00034623	-0.032573	-1.8611E-05	571.3504794460192	43.977	0.20741	43.603	43.52	43.727	-0.37373					7	3	3	0	0	0	0.51145	1	16211	16211		34.402	4.5611	1	4903100			8091	841	4568	4603	7846	7846					0.12194249465574103
EEKARLLIGL	10	Unmodified	_EEKARLLIGL_					0	0	0		nc|ENSG00000007202|Q14667-3|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-3|BLTP2	nc|ENSG00000007202|Q14667-3|BLTP2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	571.350606	1140.68666	0.7274	0.0004156	2.1402	0.0012228	2.8676	0.0016384	571.8542167241126	43.712	0.25697	43.633	43.453	43.71	-0.078369	0.028328	0.0030483	NaN	34.402	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3447100			8092	841	4568	4603							0.12194249465574103
EEKARLLIGL	10	Unmodified	_EEKARLLIGL_					0	0	0		nc|ENSG00000007202|Q14667-3|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-3|BLTP2	nc|ENSG00000007202|Q14667-3|BLTP2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	571.350606	1140.68666	0.5493	0.00031384	-0.59829	-0.00034183	-0.048988	-2.7989E-05	571.3502920553052	43.885	0.26088	43.579	43.396	43.657	-0.30616	-0.026246	-8.1003E-05	NaN	34.402	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3667100			8093	841	4568	4603							0.12194249465574103
EEKASVGP	8	Unmodified	_EEKASVGP_					0	0	0		ENSG00000120742|ENST00000239944|SERP1	ENSG00000120742|ENST00000239944|SERP1	ENSG00000120742|ENST00000239944|SERP1	MSMS	HCT116MG_D190212_S1	1	408.7084655761719	2	408.708525	815.402498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.94	1	18.94	18.44	19.44	0								0	0	0	0.55681	1	6540	6540		39.957	1.8061	1				8094	2712	4569	4604	7847	7847					-0.012587562989438084
EEKASVGP	8	Unmodified	_EEKASVGP_					0	0	0		ENSG00000120742|ENST00000239944|SERP1	ENSG00000120742|ENST00000239944|SERP1	ENSG00000120742|ENST00000239944|SERP1	MULTI-MSMS	HCT116MG_D190212_S2	2	408.7086181640625	2	408.708525	815.402498	-0.17411	-7.1161E-05	0.35614	0.00014556	0.18203	7.4396E-05	408.7085458169569	19.443	0.62434	19.074	18.68	19.304	-0.3695					24	11	3	0	0	0	0.30543	1	6729	6729		58.679	12.658	1	9481800			8095	2712	4569	4604	7848	7848					-0.012587562989438084
EEKDKSLAP	9	Unmodified	_EEKDKSLAP_					0	0	0			REV__ENST00000374089.5_1_1:27426800-27429818:-|nuORF	REV__ENST00000374089.5_1_1:27426800-27429818:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	508.7432861328125	2	508.766571	1015.51859	0.51901	0.00026406	-0.85002	-0.00043246	-0.33101	-0.00016841	508.7660897413207	20.877	0.47179	20.877	20.54	21.012	0					14	8	2	0	0	0	0.086606	1	7371	7371		58.679	8.7458	1	3405900	+		8096	10979	4570	4605	7849	7849					0.011451424810843491
EEKDPGMGA	9	Unmodified	_EEKDPGMGA_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S1	1	467.2029113769531	2	467.20275	932.390947	0.10697	4.9977E-05	-0.083699	-3.9104E-05	0.023272	1.0873E-05	467.202615520713	19.053	0.31265	19.053	18.871	19.183	0					8	5	2	0	0	0	0.047849	1	6591	6591		75.761	39.634	1	8085300			8097	3862	4571	4606	7850	7850					-0.07795321384583076
EEKDPGMGA	9	Unmodified	_EEKDPGMGA_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S2	2	467.2026062011719	2	467.20275	932.390947	0.20808	9.7213E-05	0.10305	4.8145E-05	0.31113	0.00014536	467.20268858235573	19.53	0.46795	19.16	18.992	19.46	-0.3695					20	8	4	0	0	0	0.034046	1	6765	6765		82.529	46.402	1	57999000			8098	3862	4571	4606	7851	7851					-0.07795321384583076
EEKDPGMGA	9	Unmodified	_EEKDPGMGA_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S2	2	933.3995971679688	1	933.398223	932.390947	0.77833	0.00072649	0.25635	0.00023928	1.0347	0.00096577	933.3984714317771	19.544	0.31183	19.174	18.992	19.304	-0.3695					8	5	2	0	0	0	0.0058997	1	6792	6792		129.77	78.143	1	9045300			8099	3862	4571	4606	7852	7852					-0.07795321384583076
EEKDPGMGA	9	Unmodified	_EEKDPGMGA_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S3	3	467.2026672363281	2	467.20275	932.390947	0.25809	0.00012058	-0.17611	-8.2281E-05	0.081974	3.8299E-05	467.20257946257726	18.729	0.41644	18.798	18.667	19.083	0.069159					18	7	4	0	0	0	0.034046	1	6387	6387		82.529	46.402	1	18312000			8100	3862	4571	4606	7853	7853					-0.07795321384583076
EEKDPGMGA	9	Unmodified	_EEKDPGMGA_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S3	3	933.3993530273438	1	933.398223	932.390947	0.77868	0.00072682	0.43923	0.00040998	1.2179	0.0011368	933.3985327840601	18.747	0.20832	18.817	18.719	18.927	0.069159					6	3	2	0	0	0	0.026999	1	6410	6410		89.401	37.132	1	1286300			8101	3862	4571	4606	7854	7854					-0.07795321384583076
EEKDPGMGA	9	Unmodified	_EEKDPGMGA_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S4	4	467.2030334472656	2	467.20275	932.390947	-0.090528	-4.2295E-05	0.22806	0.00010655	0.13754	6.4257E-05	467.2027560948424	19.03	0.25994	18.843	18.713	18.973	-0.18674					7	4	2	0	0	0	0.11023	1	6439	6439		56.177	23.872	1	2945800			8102	3862	4571	4606	7855	7855					-0.07795321384583076
EEKDWKTAY	9	Unmodified	_EEKDWKTAY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S1	1	585.2777709960938	2	585.277303	1168.54005	0.60565	0.00035447	-0.0918	-5.3729E-05	0.51385	0.00030075	585.2771639101696	27.826	0.36445	27.826	27.696	28.06	0					9	6	2	0	0	0	0.0034966	1	10120	10120		166.77	104.2	1	49788000			8103	2176	4572	4607	7856	7856					-0.03747472490204018
EEKDWKTAY	9	Unmodified	_EEKDWKTAY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S2	2	390.52044677734375	3	390.520628	1168.54005	0.10923	4.2656E-05	-0.25127	-9.8128E-05	-0.14205	-5.5472E-05	390.52046394305705	28.23	0.31106	27.9	27.77	28.081	-0.32987					13	5	4	0	0	0	0.39784	1	10312	10312		16.566	0.82726	1	68363000			8104	2176	4572	4607	7857	7857					-0.03747472490204018
EEKDWKTAY	9	Unmodified	_EEKDWKTAY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S3	3	585.277587890625	2	585.277303	1168.54005	0.33371	0.00019531	0.15217	8.906E-05	0.48587	0.00028437	585.2772423647791	28.202	0.31341	27.996	27.863	28.177	-0.20593					15	5	4	0	0	0	0.0037246	1	10206	10206		154.75	93.151	1	37035000			8105	2176	4572	4607	7858	7858					-0.03747472490204018
EEKDWKTAY	9	Unmodified	_EEKDWKTAY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S3	3	390.8548583984375	3	390.520628	1168.54005	-0.19608	-7.6572E-05	0.18475	7.2149E-05	-0.011327	-4.4235E-06	390.5206568256206	28.21	0.36557	28.004	27.863	28.229	-0.20593					14	6	4	0	0	0	0.45867	1	10215	10215		13.615	2.1202	1	14541000			8106	2176	4572	4607	7859	7859					-0.03747472490204018
EEKDWKTAY	9	Unmodified	_EEKDWKTAY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	HCT116MG_D190212_S4	4	585.2772216796875	2	585.277303	1168.54005	0.36257	0.0002122	-0.17213	-0.00010074	0.19044	0.00011146	585.2772009257556	28.421	0.26033	28.09	27.908	28.168	-0.33138					10	4	3	0	0	0	0.0045072	1	10223	10223		143.21	89.809	1	8723500			8107	2176	4572	4607	7860	7860					-0.03747472490204018
EEKDWKTAY	9	Unmodified	_EEKDWKTAY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MATCH	HCT116MG_D190212_S2	2		2	585.277303	1168.54005	0.54633	0.00031975	-0.062466	-3.656E-05	0.48386	0.00028319	585.2772321415811	28.276	0.31106	27.946	27.77	28.081	-0.32987	-0.018636	-4.0927E-05	NaN	166.77	17	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216400000			8108	2176	4572	4607							-0.03747472490204018
EEKDWKTAY	9	Unmodified	_EEKDWKTAY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	390.520628	1168.54005	0.10923	4.2656E-05	-0.25127	-9.8128E-05	-0.14205	-5.5472E-05	390.52046394305705	28.23	0.31106	27.9	27.77	28.081	-0.32987	-0.052072	-0.00023102	NaN	16.566	13	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68363000			8109	2176	4572	4607							-0.03747472490204018
EEKDWKTAY	9	Unmodified	_EEKDWKTAY_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	390.520628	1168.54005	0.027784	1.085E-05	-0.055045	-2.1496E-05	-0.027261	-1.0646E-05	390.5205219411007	28.385	0.26033	28.053	27.908	28.168	-0.33138	0.1012	-1.1271E-06	NaN	16.566	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3404000			8110	2176	4572	4607							-0.03747472490204018
EEKEELKKP	9	Unmodified	_EEKEELKKP_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MSMS	HCT116MG_D190212_S2	2	565.3255004882812	2	565.308603	1128.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.745	1	17.389	16.889	17.889	-0.35647								0	0	0	0.76669	1	6058	6058		12.532	0	1				8111	2089	4573	4608	7861	7861					0.04349673578008151
EEKEFISY	8	Unmodified	_EEKEFISY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	522.7477416992188	2	522.747847	1043.48114	-0.049932	-2.6102E-05	0.35497	0.00018556	0.30503	0.00015946	522.7480147656519	38.774	0.2588	38.774	38.644	38.903	0					7	4	2	0	0	0	0.1893	1	14528	14528		75.761	18.289	1	33962000			8112	741	4574	4609	7862	7862					-0.03885948784500215
EEKEFISY	8	Unmodified	_EEKEFISY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	522.7485961914062	2	522.747847	1043.48114	0.27408	0.00014328	0.62454	0.00032648	0.89862	0.00046975	522.7482334234185	38.762	0.36485	38.678	38.544	38.909	-0.084618					15	6	4	0	0	0	0.15501	1	14570	14570		82.529	25.058	1	77783000			8113	741	4574	4609	7863	7863					-0.03885948784500215
EEKEFISY	8	Unmodified	_EEKEFISY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1044.490234375	1	1044.48842	1043.48114	0.64236	0.00067094	0.71236	0.00074406	1.3547	0.001415	1044.4894579425788	38.761	0.15649	38.677	38.597	38.754	-0.084618					4	2	2	0	0	0	0.15501	1	14596	14596		82.529	32.975	1	14515000			8114	741	4574	4609	7864	7864					-0.03885948784500215
EEKEFISY	8	Unmodified	_EEKEFISY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	522.7479858398438	2	522.747847	1043.48114	0.28628	0.00014965	0.31072	0.00016243	0.597	0.00031208	522.7478829244709	39.043	0.52253	38.742	38.456	38.979	-0.30137					19	9	3	0	0	0	0.1893	1	14465	14465		75.761	18.289	1	44008000			8115	741	4574	4609	7865	7865					-0.03885948784500215
EEKEFISY	8	Unmodified	_EEKEFISY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	522.7481079101562	2	522.747847	1043.48114	0.35078	0.00018337	0.43766	0.00022878	0.78844	0.00041216	522.7479646360299	39.127	0.37964	38.747	38.592	38.971	-0.38055					14	8	2	0	0	0	0.1893	1	14371	14371		75.761	27.415	1	12078000			8116	741	4574	4609	7866	7866					-0.03885948784500215
EEKEFISY	8	Unmodified	_EEKEFISY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1044.48842	1043.48114	0.52203	0.00054525	-0.15326	-0.00016008	0.36876	0.00038517	1044.4879949311262	39.015	0.31135	38.713	38.613	38.924	-0.30137	0.018377	-0.00046072	NaN	82.529	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1764000			8117	741	4574	4609							-0.03885948784500215
EEKEGHVPA	9	Unmodified	_EEKEGHVPA_					0	0	0			REV__ENST00000602616.6_1_15:31040784-31060146:+|nuORF	REV__ENST00000602616.6_1_15:31040784-31060146:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	498.2435607910156	2	498.243264	994.471974	0.2776	0.00013831	0.51023	0.00025422	0.78783	0.00039253	498.24323839062777	15.789	0.57453	15.454	15.324	15.898	-0.33451					17	10	2	0	0	0	0.31596	1	5293	5293		29.082	0	1	5417700	+		8118	16757	4575	4610	7867	7867					-0.025482973501880224
EEKERLKKCPK	11	Unmodified	_EEKERLKKCPK_					0	0	0		nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	MSMS	HCT116MG_D190212_S1	1	694.3907470703125	2	694.389936	1386.76532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.278	1	19.278	18.778	19.778	0								0	0	0	0.95273	1	6676	6676		4.897	1.3005	1				8119	6124	4576	4611	7868	7868					0.0874073370835049
EEKERWIRA	9	Unmodified	_EEKERWIRA_					0	0	0		ENST00000453371.2_1_2:236954608-237032763:+|nuORF;ENST00000473633.1_1_7:150838782-150841027:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	608.8261108398438	2	608.825286	1215.63602	0.62332	0.00037949	-0.14148	-8.6137E-05	0.48184	0.00029335	608.8251210611072	26.11	0.2087	26.11	25.98	26.188	0					6	3	2	0	0	0	0.033064	1	9429	9429		100.09	32.253	1	10827000			8120	3244	4577	4612	7869	7869					0.03682720140568563
EEKERWIRA	9	Unmodified	_EEKERWIRA_					0	0	0		ENST00000453371.2_1_2:236954608-237032763:+|nuORF;ENST00000473633.1_1_7:150838782-150841027:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	406.21923828125	3	406.219283	1215.63602	0.07569	3.0747E-05	-0.33459	-0.00013592	-0.2589	-0.00010517	406.21910678902765	26.115	0.2609	26.115	25.98	26.24	0					10	4	3	0	0	0	0.064006	1	9433	9433		67.838	20.244	1	20842000			8121	3244	4577	4612	7870	7870					0.03682720140568563
EEKERWIRA	9	Unmodified	_EEKERWIRA_					0	0	0		ENST00000453371.2_1_2:236954608-237032763:+|nuORF;ENST00000473633.1_1_7:150838782-150841027:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	406.21917724609375	3	406.219283	1215.63602	-0.21651	-8.7949E-05	0.18247	7.4125E-05	-0.034031	-1.3824E-05	406.21929794740237	26.567	0.31159	26.206	26.076	26.387	-0.36164					21	5	5	0	0	0	0.026272	1	9618	9618		90.135	22.297	1	195240000			8122	3244	4577	4612	7871	7871					0.03682720140568563
EEKERWIRA	9	Unmodified	_EEKERWIRA_					0	0	0		ENST00000453371.2_1_2:236954608-237032763:+|nuORF;ENST00000473633.1_1_7:150838782-150841027:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	608.8255004882812	2	608.825286	1215.63602	0.50082	0.00030491	-0.23892	-0.00014546	0.2619	0.00015945	608.8251531291664	26.567	0.41648	26.206	26.024	26.441	-0.36164					20	7	4	0	0	0	0.0045271	1	9620	9620		168.54	47.003	1	148240000			8123	3244	4577	4612	7872	7872					0.03682720140568563
EEKERWIRA	9	Unmodified	_EEKERWIRA_					0	0	0		ENST00000453371.2_1_2:236954608-237032763:+|nuORF;ENST00000473633.1_1_7:150838782-150841027:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	608.8258666992188	2	608.825286	1215.63602	0.60601	0.00036895	-0.2661	-0.00016201	0.33991	0.00020694	608.8251778410876	26.238	0.26066	26.088	25.942	26.203	-0.14924					11	4	3	0	0	0	6.3025E-05	1	9407	9407		211.85	51.165	1	29376000			8124	3244	4577	4612	7873	7873					0.03682720140568563
EEKERWIRA	9	Unmodified	_EEKERWIRA_					0	0	0		ENST00000453371.2_1_2:236954608-237032763:+|nuORF;ENST00000473633.1_1_7:150838782-150841027:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MSMS	HCT116MG_D190212_S3	3	406.21917724609375	3	406.219283	1215.63602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.234	1	26.085	25.585	26.585	-0.14924								0	0	0	0.088354	1	9402	9402		59.368	19.129	1				8125	3244	4577	4612	7874	7874					0.03682720140568563
EEKERWIRA	9	Unmodified	_EEKERWIRA_					0	0	0		ENST00000453371.2_1_2:236954608-237032763:+|nuORF;ENST00000473633.1_1_7:150838782-150841027:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	406.2191162109375	3	406.219283	1215.63602	0.045445	1.846E-05	-0.29817	-0.00012112	-0.25273	-0.00010266	406.2190912350228	26.56	0.67543	26.26	26.026	26.701	-0.30087					18	12	3	0	0	0	0.037825	1	9471	9471		80.676	21.308	1	22140000			8126	3244	4577	4612	7875	7875					0.03682720140568563
EEKERWIRA	9	Unmodified	_EEKERWIRA_					0	0	0		ENST00000453371.2_1_2:236954608-237032763:+|nuORF;ENST00000473633.1_1_7:150838782-150841027:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	ENST00000453371.2_1_2:236954608-237032763:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	608.8263549804688	2	608.825286	1215.63602	0.85745	0.00052204	-0.32139	-0.00019567	0.53606	0.00032637	608.8251691063192	26.56	0.20798	26.26	26.13	26.338	-0.30087					12	3	4	0	0	0	0.024226	1	9476	9476		100.09	23.266	1	10987000			8127	3244	4577	4612	7876	7876					0.03682720140568563
EEKEVKEAP	9	Unmodified	_EEKEVKEAP_					0	0	0		nc|ENSG00000104722|P07197-2|NEFM;NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant;NEFM|p.K843Nfs*4|1|0.11|ENSG00000104722|chr8:24918383-24918384|-/T|frameshift_variant;NEFM|p.G845Vfs*10|1|0.22|ENSG00000104722|chr8:24918384-24918384|G/-|frameshift_variant;NEFM|p.I861Nfs*4|1|0.3|ENSG00000104722|chr8:24918430-24918431|-/A|frameshift_variant;ENSG00000104722|ENST00000221166|NEFM	nc|ENSG00000104722|P07197-2|NEFM	nc|ENSG00000104722|P07197-2|NEFM	MSMS	HCT116MG_D190212_S1	1	529.7957763671875	2	529.771854	1057.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.733	1	40.733	40.233	41.233	0								0	0	0	0.61599	1	15318	15318		23.148	3.8914	1				8128	1946	4578	4613	7877	7877					0.002691251355145141
EEKHQQQP	8	Unmodified	_EEKHQQQP_					0	0	0			REV__nc|ENSG00000168522|P49354-2|FNTA	REV__nc|ENSG00000168522|P49354-2|FNTA	MULTI-SECPEP	HCT116MG_D190212_S3	3	512.2471313476562	2	512.246338	1022.47812	-0.052076	-2.6676E-05	0.30319	0.00015531	0.25111	0.00012863	512.7480752676597	17.222	0.26002	17.307	17.12	17.381	0.084467					6	4	2	0	0	0	0.27349	1	5715	5715		30.225	3.3412	1	899020	+		8129	13205	4579	4614	7878	7878					-0.032217791186667455
EEKIGTERA	9	Unmodified	_EEKIGTERA_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	MULTI-MSMS	HCT116MG_D190212_S2	2	516.769775390625	2	516.769645	1031.52474	-0.23308	-0.00012045	0.63822	0.00032981	0.40514	0.00020936	516.7697953979564	18.607	0.2077	18.244	18.113	18.321	-0.36325					7	3	3	0	0	0	0.01386	1	6415	6415		103.82	28.063	1	20015000			8130	2831	4580	4615	7879	7879					0.010236607126444142
EEKIGTERA	9	Unmodified	_EEKIGTERA_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	MSMS	HCT116MG_D190212_S3	3	516.7692260742188	2	516.769645	1031.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.462	1	17.543	17.043	18.043	0.081358								0	0	0	0.19683	1	5868	5868		47.594	3.7361	1				8131	2831	4580	4615	7880	7880					0.010236607126444142
EEKILEEY	8	Unmodified	_EEKILEEY_					0	0	0			REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7607421875	2	526.760955	1051.50736	0.32783	0.00017269	-0.18859	-9.9343E-05	0.13924	7.3347E-05	526.760815538956	38.338	0.25865	38.245	38.115	38.374	-0.09301					10	4	3	0	0	0	0.17427	1	14427	14427		78.728	9.6231	1	23509000	+		8132	10106	4581	4616	7881	7881					-0.016336796130190123
EEKILEEY	8	Unmodified	_EEKILEEY_					0	0	0			REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7603759765625	2	526.760955	1051.50736	0.28277	0.00014895	-0.69818	-0.00036777	-0.41541	-0.00021882	526.7605022038982	38.575	0.31183	38.274	38.04	38.352	-0.30137					8	5	2	0	0	0	0.22822	1	14322	14322		68.081	6.7232	1	5737000	+		8133	10106	4581	4616	7882	7882					-0.016336796130190123
EEKILEEY	8	Unmodified	_EEKILEEY_					0	0	0			REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	526.760955	1051.50736	-0.4909	-0.00025859	0.35791	0.00018853	-0.13299	-7.0053E-05	526.7611145936476	38.306	0.15641	38.306	38.227	38.384	0	0.030884	0.00015509	NaN	78.728	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7487200	+		8134	10106	4581	4616							-0.016336796130190123
EEKILEEY	8	Unmodified	_EEKILEEY_					0	0	0			REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	526.760955	1051.50736	0.32783	0.00017269	-0.18859	-9.9343E-05	0.13924	7.3347E-05	526.760815538956	38.338	0.25865	38.245	38.115	38.374	-0.09301	-0.03013	-0.00042067	NaN	78.728	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23509000	+		8135	10106	4581	4616							-0.016336796130190123
EEKILEEY	8	Unmodified	_EEKILEEY_					0	0	0			REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	REV__CCDC112|p.R236Gfs*7|1|0.32|ENSG00000164221|chr5:115271590-115271590|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	526.760955	1051.50736	0.28277	0.00014895	-0.69818	-0.00036777	-0.41541	-0.00021882	526.7605022038982	38.575	0.31183	38.274	38.04	38.352	-0.30137	-0.00075367	-0.00095753	NaN	78.728	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5737000	+		8136	10106	4581	4616							-0.016336796130190123
EEKKDWVQA	9	Unmodified	_EEKKDWVQA_					0	0	0		FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant;ENSG00000102302|ENST00000375135|FGD1	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	566.7857666015625	2	566.785296	1131.55604	0.36105	0.00020464	0.010989	6.2285E-06	0.37204	0.00021087	566.7855341494254	26.723	0.41721	26.37	26.137	26.554	-0.35254					11	7	3	0	0	0	0.012531	1	9683	9683		107.1	57.545	1	30462000			8137	1834	4582	4617	7883	7883					-0.004477662532735849
EEKKDWVQA	9	Unmodified	_EEKKDWVQA_					0	0	0		FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant;ENSG00000102302|ENST00000375135|FGD1	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	567.2884521484375	2	566.785296	1131.55604	0.54311	0.00030783	0.46958	0.00026615	1.0127	0.00057398	566.7850780988441	26.43	0.57266	26.281	26.098	26.671	-0.14924					22	10	3	0	0	0	0.011034	1	9490	9490		110.79	61.238	1	14240000			8138	1834	4582	4617	7884	7884					-0.004477662532735849
EEKKDWVQA	9	Unmodified	_EEKKDWVQA_					0	0	0		FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant;ENSG00000102302|ENST00000375135|FGD1	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	567.2871704101562	2	566.785296	1131.55604	0.38143	0.00021619	1.0378	0.00058822	1.4193	0.00080441	567.2877981516841	26.716	0.36382	26.415	26.13	26.493	-0.30087					9	6	2	0	0	0	0.071914	1	9553	9553		63.961	32.692	1	6379900			8139	1834	4582	4617	7885	7885					-0.004477662532735849
EEKKEEGA	8	Unmodified	_EEKKEEGA_					0	0	0			REV__ENSG00000180543|ENST00000322128|TSPYL5	REV__ENSG00000180543|ENST00000322128|TSPYL5	MULTI-MSMS	HCT116MG_D190212_S3	3	460.19915771484375	2	460.221997	918.429441	0.38941	0.00017922	1.3086	0.00060223	1.698	0.00078144	460.22183440991176	19.092	0.72849	19.161	18.823	19.551	0.069159					37	13	4	0	0	0	0.71077	1	6645	6645		21.747	1.293	1	55004000	+		8140	13663	4583	4618	7886	7886					-0.03303692478425546
EEKKELKAP	9	Unmodified	_EEKKELKAP_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	536.30615234375	2	536.305864	1070.59717	0.57106	0.00030627	-0.040031	-2.1469E-05	0.53103	0.0002848	536.3057641327172	17.802	0.26059	17.802	17.62	17.88	0					10	4	3	0	0	0	0.012343	1	6082	6082		107.56	61.864	1	23403000			8141	1256	4584	4619	7887	7887					0.06469994786198185
EEKKELKAP	9	Unmodified	_EEKKELKAP_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	357.8728942871094	3	357.873001	1070.59717	0.066283	2.3721E-05	-0.20355	-7.2844E-05	-0.13726	-4.9123E-05	357.8728612997033	17.802	0.26059	17.802	17.62	17.88	0					9	4	3	0	0	0	0.1535	1	6084	6084		37.771	6.3095	1	11319000			8142	1256	4584	4619	7888	7888					0.06469994786198185
EEKKELKAP	9	Unmodified	_EEKKELKAP_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	536.3059692382812	2	536.305864	1070.59717	0.040818	2.1891E-05	0.26079	0.00013986	0.30161	0.00016175	536.3059487538189	18.504	0.41664	18.14	17.956	18.373	-0.36325					20	7	4	0	0	0	0.0064513	1	6364	6364		124.95	73.323	1	194580000			8143	1256	4584	4619	7889	7889					0.06469994786198185
EEKKELKAP	9	Unmodified	_EEKKELKAP_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	536.305908203125	2	536.305864	1070.59717	0.25234	0.00013533	0.10561	5.6637E-05	0.35795	0.00019197	536.3058608080221	17.166	0.4685	17.251	17.016	17.485	0.084467					17	8	4	0	0	0	0.0068642	1	5731	5731		121.35	58.773	1	21384000			8144	1256	4584	4619	7890	7890					0.06469994786198185
EEKKELKAP	9	Unmodified	_EEKKELKAP_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	536.16552734375	2	536.305864	1070.59717	0.13703	7.3492E-05	0.3265	0.0001751	0.46354	0.0002486	536.305961926143	17.577	0.36338	17.407	17.225	17.588	-0.17047					8	6	2	0	0	0	0.43775	1	5843	5843		20.454	3.3407	1	6046700			8145	1256	4584	4619	7891	7891					0.06469994786198185
EEKKEWIQI	9	Unmodified	_EEKKEWIQI_					0	0	0		nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-MSMS	HCT116MG_D190212_S3	3	601.8248291015625	2	601.824421	1201.63429	0.63152	0.00038006	-0.35754	-0.00021518	0.27397	0.00016488	601.8241080940412	43.78	0.26089	43.474	43.292	43.553	-0.30616					8	4	2	0	0	0	0.037825	1	16355	16355		80.676	39.951	1	7161400			8146	2956	4585	4620	7892	7892					0.041536663319675426
EEKKEWIQI	9	Unmodified	_EEKKEWIQI_					0	0	0		nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-MATCH	HCT116MG_D190212_S2	2		2	601.824421	1201.63429	0.60578	0.00036457	-0.65072	-0.00039162	-0.044939	-2.7045E-05	601.8239575318543	43.472	0.20669	43.399	43.252	43.458	-0.073376	-0.037651	-0.00022934	NaN	80.676	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13574000			8147	2956	4585	4620							0.041536663319675426
EEKKPPPP	8	Unmodified	_EEKKPPPP_					0	0	0		ENST00000489701.5_1_20:35154375-35155431:+|nuORF;nc|ENSG00000080845|Q9Y2H0-3|DLGAP4;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4	ENST00000489701.5_1_20:35154375-35155431:+|nuORF	ENST00000489701.5_1_20:35154375-35155431:+|nuORF	MSMS	HCT116MG_D190212_S1	1	461.2574768066406	2	461.255643	920.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.903	1	29.903	29.403	30.403	0								0	0	0	0.8837	1	10947	10947		11.114	0.29054	1				8148	1403	4586	4621	7893	7893					0.03330382523188291
EEKKSQISA	9	Unmodified	_EEKKSQISA_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MULTI-MSMS	HCT116MG_D190212_S2	2	510.27191162109375	2	510.272021	1018.52949	0.34339	0.00017522	-1.243	-0.00063427	-0.89963	-0.00045905	510.2718202901349	16.884	0.31208	16.543	16.308	16.62	-0.34183					8	5	2	0	0	0	0.094138	1	5736	5736		59.368	25.923	1	11212000			8149	2251	4587	4622	7894	7894					0.020965448553738497
EEKLEHETA	9	Unmodified	_EEKLEHETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S1	1	543.2593383789062	2	543.259111	1084.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.526	1	17.526	17.026	18.026	0								0	0	0	0.76718	1	5970	5970		10.824	2.2306	1				8150	3119	4588	4623	7895	7895					-0.0352034938689485
EEKLEHETA	9	Unmodified	_EEKLEHETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	543.2592163085938	2	543.259111	1084.50367	0.43999	0.00023903	-0.089644	-4.87E-05	0.35035	0.00019033	543.2589351679326	18.032	0.26087	17.676	17.545	17.806	-0.35647					10	4	3	0	0	0	0.0043772	1	6175	6175		145.13	79.895	1	29283000			8151	3119	4588	4623	7896	7896					-0.0352034938689485
EEKLEHETA	9	Unmodified	_EEKLEHETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	543.25927734375	2	543.259111	1084.50367	0.30701	0.00016679	0.20515	0.00011145	0.51216	0.00027824	543.259005973261	16.906	0.26027	16.99	16.86	17.12	0.084467					7	4	2	0	0	0	0.0058997	1	5665	5665		129.77	83.751	1	7525600			8152	3119	4588	4623	7897	7897					-0.0352034938689485
EEKLEHETA	9	Unmodified	_EEKLEHETA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH	HCT116MG_D190212_S1	1		2	543.259111	1084.50367	0.74899	0.0004069	0.025698	1.3961E-05	0.77469	0.00042086	543.258992460428	17.445	0.15672	17.445	17.359	17.516	0	-0.11556	6.99E-05	NaN	145.13	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2717200			8153	3119	4588	4623							-0.0352034938689485
EEKLQEKA	8	Unmodified	_EEKLQEKA_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;PRPF8|p.F128Lfs*23|1|0.37|ENSG00000174231|chr17:1682179-1682179|G/-|frameshift_variant;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S2	2	975.4558715820312	1	974.515302	973.508025	0.65328	0.00063663	0.27549	0.00026847	0.92878	0.00090511	974.5152061627805	27.817	0.46282	27.475	27.295	27.758	-0.34201					22	8	4	0	0	0	0.58007	1	10070	10070		34.102	7.2188	1	531680000			8154	5321	4589	4624	7898	7898					0.020211598266769215
EEKNDHLHA	9	Unmodified	_EEKNDHLHA_					0	0	0		ENSG00000171159|ENST00000372994|BBLN	ENSG00000171159|ENST00000372994|BBLN	ENSG00000171159|ENST00000372994|BBLN	MSMS	HCT116MG_D190212_S1	1	546.757080078125	2	546.757069	1091.49959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.785	1	15.785	15.285	16.285	0								0	0	0	0.74083	1	5268	5268		17.113	4.5813	1				8155	5178	4590	4625	7899	7899					-0.042503940899450754
EEKNDHLHA	9	Unmodified	_EEKNDHLHA_					0	0	0		ENSG00000171159|ENST00000372994|BBLN	ENSG00000171159|ENST00000372994|BBLN	ENSG00000171159|ENST00000372994|BBLN	MULTI-MSMS	HCT116MG_D190212_S2	2	546.7573852539062	2	546.757069	1091.49959	0.32499	0.00017769	0.23537	0.00012869	0.56036	0.00030638	546.7570940943691	12.074	0.16406	11.784	11.655	11.82	-0.28953					9	5	3	0	0	0	0.35128	1	3936	3936		25.399	15.325	1	864000			8156	5178	4590	4625	7900	7900					-0.042503940899450754
EEKNDHLHA	9	Unmodified	_EEKNDHLHA_					0	0	0		ENSG00000171159|ENST00000372994|BBLN	ENSG00000171159|ENST00000372994|BBLN	ENSG00000171159|ENST00000372994|BBLN	MULTI-MSMS	HCT116MG_D190212_S2	2	364.84039306640625	3	364.840472	1091.49959	-0.28827	-0.00010517	0.061947	2.2601E-05	-0.22633	-8.2573E-05	364.8404616528467	16.03	0.20892	15.695	15.585	15.794	-0.33451					5	3	2	0	0	0	0.39063	1	5382	5382		16.149	9.9573	1	4502300			8157	5178	4590	4625	7901	7901					-0.042503940899450754
EEKNDHLHA	9	Unmodified	_EEKNDHLHA_					0	0	0		ENSG00000171159|ENST00000372994|BBLN	ENSG00000171159|ENST00000372994|BBLN	ENSG00000171159|ENST00000372994|BBLN	MSMS	HCT116MG_D190212_S2	2	546.7568969726562	2	546.757069	1091.49959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.058	1	15.723	15.223	16.223	-0.33451								0	0	0	0.0046152	1	5378	5378		118.07	70.474	1				8158	5178	4590	4625	7902	7902					-0.042503940899450754
EEKNFKAFA	9	Unmodified	_EEKNFKAFA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S1	1	542.7783203125	2	542.277106	1082.53966	0.50605	0.00027442	-0.31055	-0.00016841	0.1955	0.00010601	542.2767728907872	30.243	0.3506	30.243	30.049	30.399	0					15	6	3	0	0	0	0.012596	1	11079	11079		106.94	65.101	1	24617000			8159	4928	4591	4626	7903	7903					0.0016915258061089844
EEKNFKAFA	9	Unmodified	_EEKNFKAFA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S2	2	542.277099609375	2	542.277106	1082.53966	0.28964	0.00015707	-0.33773	-0.00018315	-0.048093	-2.608E-05	542.2767874761563	30.645	0.46395	30.378	30.148	30.612	-0.26704					22	8	4	0	0	0	0.0046822	1	11277	11277		140.63	98.794	1	211510000			8160	4928	4591	4626	7904	7904					0.0016915258061089844
EEKNFKAFA	9	Unmodified	_EEKNFKAFA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S3	3	542.2772216796875	2	542.277106	1082.53966	0.38428	0.00020839	-0.22671	-0.00012294	0.15757	8.5447E-05	542.2768228791441	30.712	0.41192	30.451	30.297	30.709	-0.26071					18	8	3	0	0	0	0.0046822	1	11183	11183		140.63	98.678	1	33691000			8161	4928	4591	4626	7905	7905					0.0016915258061089844
EEKNFKAFA	9	Unmodified	_EEKNFKAFA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S4	4	542.277099609375	2	542.277106	1082.53966	0.4171	0.00022619	-0.098177	-5.3239E-05	0.31893	0.00017295	542.2767958247034	30.872	0.31129	30.508	30.409	30.72	-0.36416					8	5	2	0	0	0	0.034046	1	11201	11201		82.529	51.893	1	5279800			8162	4928	4591	4626	7906	7906					0.0016915258061089844
EEKPEIHKP	9	Unmodified	_EEKPEIHKP_					0	0	0		ENSG00000198554|ENST00000360586|WDHD1;nc|ENSG00000198554|O75717-2|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	MULTI-MSMS	HCT116MG_D190212_S1	1	553.7959594726562	2	553.795663	1105.57677	0.4048	0.00022417	-0.10448	-5.786E-05	0.30032	0.00016631	553.7956777377935	18.671	0.52087	18.671	18.298	18.819	0					17	9	2	0	0	0	0.0081783	1	6426	6426		117.84	72.138	1	7253200			8163	6240	4592	4627	7907	7907					0.02820824126365551
EEKPEIHKP	9	Unmodified	_EEKPEIHKP_					0	0	0		ENSG00000198554|ENST00000360586|WDHD1;nc|ENSG00000198554|O75717-2|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	MSMS	HCT116MG_D190212_S1	1	369.53265380859375	3	369.532868	1105.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.556	1	18.556	18.056	19.056	0								0	0	0	0.76655	1	6385	6385		12.873	2.5574	1				8164	6240	4592	4627	7908	7908					0.02820824126365551
EEKPEIHKP	9	Unmodified	_EEKPEIHKP_					0	0	0		ENSG00000198554|ENST00000360586|WDHD1;nc|ENSG00000198554|O75717-2|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	MULTI-MSMS	HCT116MG_D190212_S2	2	369.5326843261719	3	369.532868	1105.57677	-0.2915	-0.00010772	0.11429	4.2236E-05	-0.17721	-6.5485E-05	369.5328480182987	19.335	1.2513	18.966	17.845	19.096	-0.3695					41	23	3	0	0	0	0.41881	1	6629	6629		15.739	0.78146	1	34349000			8165	6240	4592	4627	7909	7909					0.02820824126365551
EEKPEIHKP	9	Unmodified	_EEKPEIHKP_					0	0	0		ENSG00000198554|ENST00000360586|WDHD1;nc|ENSG00000198554|O75717-2|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	553.795663	1105.57677	0.27379	0.00015162	0.10767	5.963E-05	0.38146	0.00021125	553.7957042814186	19.335	1.6163	18.966	17.532	19.148	-0.3695	0.14738	7.3323E-05	NaN	117.84	48	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42279000			8166	6240	4592	4627							0.02820824126365551
EEKPGALWP	9	Unmodified	_EEKPGALWP_					0	0	0			REV__ENST00000518039.1_1_8:22106011-22107622:+|nuORF	REV__ENST00000518039.1_1_8:22106011-22107622:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	514.0274047851562	2	513.766374	1025.5182	0.42426	0.00021797	-0.54272	-0.00027883	-0.11846	-6.0859E-05	513.7658465656303	52.259	0.46437	52.072	51.935	52.399	-0.18726					13	8	3	0	0	0	0.64512	1	20019	20019		8.5933	0.68312	1	22862000	+		8167	13202	4593	4628	7910	7910					0.0064576755189591495
EEKPHQWSA	9	Unmodified	_EEKPHQWSA_					0	0	0		ENSG00000181315|ENST00000415922|ZNF322	ENSG00000181315|ENST00000415922|ZNF322	ENSG00000181315|ENST00000415922|ZNF322	MULTI-MSMS	HCT116MG_D190212_S2	2	556.2622680664062	2	556.261988	1110.50942	0.28824	0.00016034	0.45774	0.00025463	0.74598	0.00041496	556.262018032742	23.091	0.26018	22.706	22.57	22.83	-0.3852					10	4	3	0	0	0	0.046513	1	8237	8237		81.915	56.924	1	14193000			8168	5631	4594	4629	7911	7911					-0.04141206084568694
EEKPHQWSA	9	Unmodified	_EEKPHQWSA_					0	0	0		ENSG00000181315|ENST00000415922|ZNF322	ENSG00000181315|ENST00000415922|ZNF322	ENSG00000181315|ENST00000415922|ZNF322	MULTI-MSMS	HCT116MG_D190212_S3	3	556.2625732421875	2	556.261988	1110.50942	0.3711	0.00020643	-0.5683	-0.00031612	-0.1972	-0.00010969	556.2615735166726	22.328	0.2607	22.328	22.198	22.459	0.00074577					8	4	2	0	0	0	0.058586	1	7839	7839		59.052	32.784	1	5333400			8169	5631	4594	4629	7912	7912					-0.04141206084568694
EEKPHQWSA	9	Unmodified	_EEKPHQWSA_					0	0	0		ENSG00000181315|ENST00000415922|ZNF322	ENSG00000181315|ENST00000415922|ZNF322	ENSG00000181315|ENST00000415922|ZNF322	MULTI-MATCH	HCT116MG_D190212_S4	4		2	556.261988	1110.50942	0.24676	0.00013726	-0.40899	-0.00022751	-0.16223	-9.0242E-05	556.7636430833165	22.732	0.26157	22.495	22.341	22.603	-0.23758	-0.014815	-0.00029623	NaN	81.915	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1911800			8170	5631	4594	4629							-0.04141206084568694
EEKPPNGTP	9	Unmodified	_EEKPPNGTP_					0	0	0		nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1	nc|ENSG00000101384|P78504-2|JAG1	nc|ENSG00000101384|P78504-2|JAG1	MULTI-MSMS	HCT116MG_D190212_S1	1	484.7379455566406	2	484.737814	967.461075	0.1732	8.3955E-05	0.14412	6.9859E-05	0.31731	0.00015381	484.7377383034422	18.528	0.99025	18.528	17.933	18.923	0					33	18	3	0	0	0	0.11023	1	6324	6324		56.177	18.203	1	14669000			8171	1784	4595	4630	7913	7913					-0.023956997244795275
EEKPPNGTP	9	Unmodified	_EEKPPNGTP_					0	0	0		nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1	nc|ENSG00000101384|P78504-2|JAG1	nc|ENSG00000101384|P78504-2|JAG1	MULTI-MSMS	HCT116MG_D190212_S2	2	484.73822021484375	2	484.737814	967.461075	-0.028175	-1.3657E-05	0.33809	0.00016388	0.30991	0.00015023	484.7379009727309	19.004	1.1992	18.634	17.689	18.888	-0.3695					48	22	3	0	0	0	0.061422	1	6482	6482		69.105	23.084	1	58464000			8172	1784	4595	4630	7914	7914					-0.023956997244795275
EEKPPNGTP	9	Unmodified	_EEKPPNGTP_					0	0	0		nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1	nc|ENSG00000101384|P78504-2|JAG1	nc|ENSG00000101384|P78504-2|JAG1	MULTI-MSMS	HCT116MG_D190212_S2	2	968.4686279296875	1	968.468352	967.461075	0.4458	0.00043174	0.38691	0.00037471	0.83271	0.00080645	968.4684490262872	19.023	0.46939	18.653	18.366	18.836	-0.3695					10	8	2	0	0	0	0.0050238	1	6587	6587		137.42	58.696	1	5738100			8173	1784	4595	4630	7915	7915					-0.023956997244795275
EEKPPNGTP	9	Unmodified	_EEKPPNGTP_					0	0	0		nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1	nc|ENSG00000101384|P78504-2|JAG1	nc|ENSG00000101384|P78504-2|JAG1	MULTI-MSMS	HCT116MG_D190212_S3	3	484.7374267578125	2	484.737814	967.461075	0.12133	5.8812E-05	-0.325	-0.00015754	-0.20367	-9.8726E-05	484.7374537191107	18.237	0.67676	18.314	17.841	18.518	0.076334					21	12	3	0	0	0	0.16306	1	6159	6159		45.7	5.7423	1	7488000			8174	1784	4595	4630	7916	7916					-0.023956997244795275
EEKQFVQP	8	Unmodified	_EEKQFVQP_					0	0	0			REV__ENST00000524186.1_1_6:56401715-56407313:-|nuORF	REV__ENST00000524186.1_1_6:56401715-56407313:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	502.7561950683594	2	502.756007	1003.49746	0.19077	9.5909E-05	0.67754	0.00034064	0.86831	0.00043655	502.7562932714954	23.441	0.20813	23.194	23.063	23.272	-0.24775					5	3	2	0	0	0	0.74206	1	8233	8233		18.135	1.1927	1	2580100	+		8175	16258	4596	4631	7917	7917					-0.004148228277585986
EEKQFVQP	8	Unmodified	_EEKQFVQP_					0	0	0			REV__ENST00000524186.1_1_6:56401715-56407313:-|nuORF	REV__ENST00000524186.1_1_6:56401715-56407313:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	502.756007	1003.49746	0.48511	0.00024389	-0.063123	-3.1735E-05	0.42199	0.00021216	502.7560705485221	23.76	0.20795	23.377	23.195	23.403	-0.38324	0.091713	-0.00012704	NaN	18.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5489300	+		8176	16258	4596	4631							-0.004148228277585986
EEKQFVQP	8	Unmodified	_EEKQFVQP_					0	0	0			REV__ENST00000524186.1_1_6:56401715-56407313:-|nuORF	REV__ENST00000524186.1_1_6:56401715-56407313:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	502.756007	1003.49746	0.19077	9.5909E-05	0.67754	0.00034064	0.86831	0.00043655	502.7562932714954	23.441	0.20813	23.194	23.063	23.272	-0.24775	-0.091713	0.00061771	NaN	18.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2580100	+		8177	16258	4596	4631							-0.004148228277585986
EEKRASRAP	9	Unmodified	_EEKRASRAP_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;ENST00000461023.5_1_16:343426-396314:-|nuORF	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.775390625	2	522.283254	1042.55196	0.26499	0.0001384	0.05872	3.0669E-05	0.32371	0.00016907	522.2832372220813	19.12	0.2084	18.75	18.627	18.836	-0.3695					5	3	2	0	0	0	0.2622	1	6638	6638		8.5933	0	1	6437200			8178	1875	4597	4632	7918	7918					0.032381890436681715
EEKRILIQA	9	Unmodified	_EEKRILIQA_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557417.5_3_12:56748997-56753873:-|nuORF;ENST00000556140.5_1_12:56748997-56753873:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	HCT116MG_D190212_S2	2	550.3273315429688	2	550.327131	1098.63971	0.60417	0.00033249	-0.45634	-0.00025114	0.14783	8.1352E-05	550.3270089927505	31.733	0.25972	31.484	31.302	31.561	-0.24883					7	4	2	0	0	0	0.16306	1	11743	11743		45.7	5.7499	1	28405000			8179	5142	4598	4633	7919	7919					0.09433389914443069
EEKRILIQA	9	Unmodified	_EEKRILIQA_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557417.5_3_12:56748997-56753873:-|nuORF;ENST00000556140.5_1_12:56748997-56753873:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-SECPEP	HCT116MG_D190212_S3	3	549.77392578125	2	550.327131	1098.63971	0.34811	0.00019158	0.079726	4.3875E-05	0.42784	0.00023545	550.3269480527122	31.799	0.26033	31.529	31.378	31.638	-0.27027					7	4	2	0	0	0	0.14889	1	11648	11648		41.84	7.4379	1	3042100			8180	5142	4598	4633	7920	7920					0.09433389914443069
EEKRKHKKKRL	11	Unmodified	_EEKRKHKKKRL_					0	0	0		ENSG00000177954|ENST00000651669|RPS27	ENSG00000177954|ENST00000651669|RPS27	ENSG00000177954|ENST00000651669|RPS27	MSMS	HCT116MG_D190212_S2	2	740.4647827148438	2	740.465158	1478.91576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.093	1	50.915	50.415	51.415	-0.17868								0	0	0	0.95954	1	19595	19595		1.3295	0.13619	1				8181	5479	4599	4634	7921	7921					0.1954626148215084
EEKRKLAQ	8	Unmodified	_EEKRKLAQ_					0	0	0		ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-2|IKBKG	ENSG00000269335|ENST00000594239|IKBKG	ENSG00000269335|ENST00000594239|IKBKG	MULTI-SECPEP	HCT116MG_D190212_S3	3	500.7745666503906	2	501.290548	1000.56654	0.49056	0.00024591	-0.052157	-2.6146E-05	0.4384	0.00021977	501.2904441188544	27.887	0.31178	27.699	27.517	27.829	-0.18847					12	5	3	0	0	0	0.2797	1	10044	10044		21.747	4.8044	1	23362000			8182	6656	4600	4635	7922	7922					0.06628261191804086
EEKRKSKSK	9	Unmodified	_EEKRKSKSK_					0	0	0			REV__CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	REV__CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	560.3278198242188	2	560.327662	1118.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.26	1	44.951	44.451	45.451	-0.30927								0	0	0	0.7689	1	16941	16941		4.756	0	1		+		8183	10170	4601	4636	7923	7923					0.08619604283330773
EEKRLITGA	9	Unmodified	_EEKRLITGA_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	HCT116MG_D190212_S1	1	508.7905578613281	2	508.790381	1015.56621	0.41644	0.00021188	-0.044413	-2.2597E-05	0.37203	0.00018929	508.79054747059394	23.979	0.20892	23.979	23.837	24.045	0					5	3	2	0	0	0	0.12421	1	8587	8587		53.404	11.448	1	4055300			8184	1151	4602	4637	7924	7924					0.059048414719427456
EEKRLITGA	9	Unmodified	_EEKRLITGA_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MSMS	HCT116MG_D190212_S2	2	508.7903137207031	2	508.790381	1015.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.606	1	24.226	23.726	24.726	-0.38003								0	0	0	0.038892	1	8824	8824		74.2	26.605	1				8185	1151	4602	4637	7925	7925					0.059048414719427456
EEKRNFAKP	9	Unmodified	_EEKRNFAKP_					0	0	0		ENSG00000118900|ENST00000262376|UBN1;nc|ENSG00000118900|Q9NPG3-2|UBN1	ENSG00000118900|ENST00000262376|UBN1	ENSG00000118900|ENST00000262376|UBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	559.8016967773438	2	559.80128	1117.58801	0.22799	0.00012763	0.30688	0.00017179	0.53488	0.00029943	559.8013494899706	18.266	0.67887	17.906	17.333	18.012	-0.35977					25	12	3	0	0	0	0.05892	1	6185	6185		70.332	39.064	1	18512000			8186	2619	4603	4638	7926	7926					0.03391646220529765
EEKRNFAKP	9	Unmodified	_EEKRNFAKP_					0	0	0		ENSG00000118900|ENST00000262376|UBN1;nc|ENSG00000118900|Q9NPG3-2|UBN1	ENSG00000118900|ENST00000262376|UBN1	ENSG00000118900|ENST00000262376|UBN1	MSMS	HCT116MG_D190212_S3	3	559.8009643554688	2	559.80128	1117.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.824	1	16.908	16.408	17.408	0.084467								0	0	0	0.034054	1	5610	5610		78.728	33.028	1				8187	2619	4603	4638	7927	7927					0.03391646220529765
EEKRYQRG	8	Unmodified	_EEKRYQRG_					0	0	0			REV__ENST00000461695.1_1_3:133489395-133497461:+|nuORF	REV__ENST00000461695.1_1_3:133489395-133497461:+|nuORF	MSMS	HCT116MG_D190212_S4	4	533.74560546875	2	533.275429	1064.53631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.798	1	33.414	32.914	33.914	-0.38426								0	0	0	0.8837	1	12316	12316		15.847	4.2069	1		+		8188	15786	4604	4639	7928	7928					0.006619025266218159
EEKSRLVSA	9	Unmodified	_EEKSRLVSA_					0	0	0		nc|ENSG00000128683|Q99259-3|GAD1;nc|ENSG00000128683|Q99259-4|GAD1;GAD1|p.W516Gfs*30|1|0.16|ENSG00000128683|chr2:170858824-170858824|T/-|frameshift_variant;ENSG00000128683|ENST00000358196|GAD1	nc|ENSG00000128683|Q99259-3|GAD1	nc|ENSG00000128683|Q99259-3|GAD1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.7801513671875	2	509.780013	1017.54547	0.28366	0.0001446	0.11951	6.0926E-05	0.40317	0.00020553	509.77999363692027	21.216	0.3107	20.833	20.651	20.961	-0.38288					8	5	2	0	0	0	0.064006	1	7483	7483		67.838	32.906	1	9751700			8189	3007	4605	4640	7929	7929					0.03740251092278868
EEKSTTPPP	9	Unmodified	_EEKSTTPPP_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2;ENST00000507947.5_1_4:76580183-76582836:-|nuORF	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MSMS	HCT116MG_D190212_S1	1	493.24566650390625	2	493.245472	984.476391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.44	1	16.44	15.94	16.94	0								0	0	0	0.71969	1	5533	5533		18.135	0	1				8190	3583	4606	4641	7930	7930					-0.016468329272925075
EEKSTTPPP	9	Unmodified	_EEKSTTPPP_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2;ENST00000507947.5_1_4:76580183-76582836:-|nuORF	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MSMS	HCT116MG_D190212_S2	2	493.24542236328125	2	493.245472	984.476391	0.3002	0.00014807	-0.24611	-0.00012139	0.054092	2.6681E-05	493.24520809756183	16.555	1.3033	16.213	15.891	17.194	-0.34183					48	24	3	0	0	0	0.047849	1	5590	5590		75.761	37.787	1	6274000			8191	3583	4606	4641	7931	7931					-0.016468329272925075
EEKTLHETV	9	Unmodified	_EEKTLHETV_					0	0	0		ZMYM2|p.K757Nfs*31|1|0.58|ENSG00000121741|chr13:20036883-20036883|A/-|frameshift_variant;ZMYM2|p.K1044Rfs*33|2|0.56|ENSG00000121741|chr13:20064537-20064537|A/-|frameshift_variant;ZMYM2|p.N1250Ifs*3|2|0.09|ENSG00000121741|chr13:20082954-20082954|A/-|frameshift_variant;ENSG00000121741|ENST00000610343|ZMYM2	ZMYM2|p.K757Nfs*31|1|0.58|ENSG00000121741|chr13:20036883-20036883|A/-|frameshift_variant	ZMYM2|p.K757Nfs*31|1|0.58|ENSG00000121741|chr13:20036883-20036883|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	543.2767944335938	2	543.277303	1084.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.56	1	29.259	28.759	29.759	-0.30095								0	0	0	0.27276	1	10833	10833		42.095	3.919	1				8192	2738	4607	4642	7932	7932					0.001165275098173879
EEKVFRAV	8	Unmodified	_EEKVFRAV_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-MSMS	HCT116MG_D190212_S1	1	489.274169921875	2	489.274367	976.53418	0.50982	0.00024944	-0.6623	-0.00032405	-0.15248	-7.4605E-05	489.2739111546998	29.19	0.67839	29.19	28.746	29.425	0					23	12	3	0	0	0	0.012121	1	10662	10662		160.52	89.382	1	51484000			8193	1604	4608	4643	7933	7933					0.04497473788808293
EEKVFRAV	8	Unmodified	_EEKVFRAV_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-MSMS	HCT116MG_D190212_S2	2	489.2744140625	2	489.274367	976.53418	0.48154	0.0002356	0.030966	1.5151E-05	0.5125	0.00025075	489.27430013371907	29.683	0.46482	29.382	29.237	29.702	-0.30095					20	8	4	0	0	0	0.0029202	1	10877	10877		174.73	93.114	1	220160000			8194	1604	4608	4643	7934	7934					0.04497473788808293
EEKVFRAV	8	Unmodified	_EEKVFRAV_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-MSMS	HCT116MG_D190212_S2	2	977.5419921875	1	977.541457	976.53418	0.90694	0.00088657	0.12016	0.00011747	1.0271	0.001004	977.5413579040502	29.683	0.25807	29.382	29.237	29.495	-0.30095					6	4	2	0	0	0	0.012121	1	10903	10903		160.52	78.903	1	18766000			8195	1604	4608	4643	7935	7935					0.04497473788808293
EEKVFRAV	8	Unmodified	_EEKVFRAV_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-MSMS	HCT116MG_D190212_S3	3	489.27435302734375	2	489.274367	976.53418	0.27364	0.00013389	-0.16184	-7.9184E-05	0.1118	5.4703E-05	489.27419540829106	29.659	0.78742	29.422	28.875	29.662	-0.23655					26	14	4	0	0	0	0.049954	1	10784	10784		123.45	52.317	1	53979000			8196	1604	4608	4643	7936	7936					0.04497473788808293
EEKVFRAV	8	Unmodified	_EEKVFRAV_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1;nc|ENSG00000095139|P48444-2|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MULTI-MSMS	HCT116MG_D190212_S4	4	489.2744140625	2	489.274367	976.53418	-0.049692	-2.4313E-05	0.24387	0.00011932	0.19418	9.5005E-05	489.2743884435573	29.876	0.57211	29.519	29.233	29.805	-0.3571					17	10	3	0	0	0	0.057078	1	10808	10808		115.69	67.346	1	18999000			8197	1604	4608	4643	7937	7937					0.04497473788808293
EEKVGNIFMT	10	Unmodified	_EEKVGNIFMT_					0	0	0		PARP15|p.F199Hfs*7|1|0.16|ENSG00000173200|chr3:122613089-122613092|TCTT/-|frameshift_variant;ENST00000465304.5_1_3:122313690-122334156:+|nuORF;ENSG00000173200|ENST00000464300|PARP15	PARP15|p.F199Hfs*7|1|0.16|ENSG00000173200|chr3:122613089-122613092|TCTT/-|frameshift_variant	PARP15|p.F199Hfs*7|1|0.16|ENSG00000173200|chr3:122613089-122613092|TCTT/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	584.2897338867188	2	584.289356	1166.56416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.219	1	34.92	34.42	35.42	-0.29922								0	0	0	0.88261	1	12992	12992		18.146	0.011366	1				8198	5278	4609	4644	7938	7938					-0.012459553281814806
EELAAAHGIT	10	Unmodified	_EELAAAHGIT_					0	0	0			REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	506.2590637207031	2	506.258914	1010.50327	0.26255	0.00013292	0.025818	1.3071E-05	0.28837	0.00014599	506.25879691225913	19.023	0.26095	18.653	18.523	18.784	-0.3695					9	4	3	0	0	0	0.17848	1	6579	6579		61.357	2.6787	1	32538000	+		8199	17740	4610	4645	7939	7939					-0.0015572431610735293
EELAAAHGIT	10	Unmodified	_EELAAAHGIT_					0	0	0			REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	506.258914	1010.50327	0.35416	0.0001793	-0.26568	-0.0001345	0.088477	4.4792E-05	506.2587204950683	18.376	0.20835	18.376	18.246	18.454	0	-0.13886	-0.0001746	NaN	61.357	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2812100	+		8200	17740	4610	4645							-0.0015572431610735293
EELAAAHGIT	10	Unmodified	_EELAAAHGIT_					0	0	0			REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	REV__tr|U7SNT9|U7SNT9_FUSNUPglDN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01948PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	506.258914	1010.50327	0.26255	0.00013292	0.025818	1.3071E-05	0.28837	0.00014599	506.25879691225913	19.023	0.26095	18.653	18.523	18.784	-0.3695	0.13886	0.00012055	NaN	61.357	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32538000	+		8201	17740	4610	4645							-0.0015572431610735293
EELAAEKAT	9	Unmodified	_EELAAEKAT_					0	0	0			REV__nc|ENSG00000147133|P21675-25|TAF1	REV__nc|ENSG00000147133|P21675-25|TAF1	MSMS	HCT116MG_D190212_S4	4	481.2455749511719	2	481.245472	960.476391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.816	1	36.431	35.931	36.931	-0.38486								0	0	0	0.61599	1	13487	13487		23.148	0	1		+		8202	11742	4611	4646	7940	7940					-0.0054283292729451205
EELARVAEGT	10	Unmodified	_EELARVAEGT_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	HCT116MG_D190212_S1	1	537.7752685546875	2	537.774928	1073.5353	0.66102	0.00035548	0.31047	0.00016696	0.97149	0.00052244	537.7749964205017	29.086	0.20894	29.086	28.955	29.164	0					6	3	2	0	0	0	0.33238	1	10623	10623		47.594	0	1	8271200			8203	1651	4612	4647	7941	7941					0.0014764336706321046
EELARVAEGT	10	Unmodified	_EELARVAEGT_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	537.775390625	2	537.774928	1073.5353	0.67963	0.00036549	0.46373	0.00024938	1.1434	0.00061487	537.7752714217054	29.409	0.30842	29.108	28.929	29.237	-0.30095					10	5	3	0	0	0	0.24395	2	10777	10766;10777		55.503	1.9328	1	52628000			8204	1651	4612	4647	7942;7943	7943					0.0014764336706321046
EELARVAEGT	10	Unmodified	_EELARVAEGT_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7749633789062	2	537.774928	1073.5353	0.59883	0.00032203	-0.026037	-1.4002E-05	0.57279	0.00030803	537.7748352418121	29.481	0.41718	29.245	29.031	29.448	-0.23655					19	7	4	0	0	0	0.10561	1	10702	10702		72.968	9.0074	1	45815000			8205	1651	4612	4647	7944	7944					0.0014764336706321046
EELARVAEGT	10	Unmodified	_EELARVAEGT_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	HCT116MG_D190212_S4	4	537.7750854492188	2	537.774928	1073.5353	0.40979	0.00022037	0.18592	9.9983E-05	0.59571	0.00032036	537.7749327347133	29.616	0.31212	29.267	29.085	29.397	-0.34921					14	5	4	0	0	0	0.057153	1	10690	10690		82.529	9.5614	1	24883000			8206	1651	4612	4647	7945	7945					0.0014764336706321046
EELDITLGNP	10	Unmodified	_EELDITLGNP_					0	0	0			REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	550.6033325195312	2	550.777136	1099.53972	0.49954	0.00027514	1.2075	0.00066508	1.7071	0.00094022	550.7775772140956	34.273	0.36343	34.097	33.967	34.331	-0.17512					10	6	2	0	0	0	0.79819	1	12824	12824		19.257	3.4098	1	23573000	+		8207	12874	4613	4648	7946	7946					-0.006068922100439522
EELDSLIKA	9	Unmodified	_EELDSLIKA_					0	0	0		nc|ENSG00000105968|Q71UI9-3|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-3|H2AZ2	MULTI-MSMS	HCT116MG_D190212_S1	1	509.2768859863281	2	509.276772	1016.53899	0.28466	0.00014497	0.028183	1.4353E-05	0.31284	0.00015932	509.27667881690735	44.595	0.31391	44.595	44.41	44.724	0					9	5	2	0	0	0	0.0053819	1	16875	16875		134.3	65.191	1	101190000			8208	2048	4614	4649	7947	7947					0.031383131409029374
EELDSLIKA	9	Unmodified	_EELDSLIKA_					0	0	0		nc|ENSG00000105968|Q71UI9-3|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-3|H2AZ2	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2768859863281	2	509.276772	1016.53899	0.58752	0.00029921	-0.1638	-8.3421E-05	0.42372	0.00021579	509.2766139000342	44.622	0.57475	44.538	44.376	44.951	-0.084797					26	10	4	0	0	0	0.0042464	1	16939	16939		147.06	68.331	1	409140000			8209	2048	4614	4649	7948	7948					0.031383131409029374
EELDSLIKA	9	Unmodified	_EELDSLIKA_					0	0	0		nc|ENSG00000105968|Q71UI9-3|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-3|H2AZ2	MULTI-MSMS	HCT116MG_D190212_S3	3	509.2769775390625	2	509.276772	1016.53899	0.41757	0.00021266	-0.065969	-3.3596E-05	0.3516	0.00017906	509.27667601638484	44.822	0.56889	44.513	44.372	44.941	-0.30927					35	12	4	0	0	0	0.0035183	1	16747	16747		157.8	75.905	1	150910000			8210	2048	4614	4649	7949	7949					0.031383131409029374
EELDSLIKA	9	Unmodified	_EELDSLIKA_					0	0	0		nc|ENSG00000105968|Q71UI9-3|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-3|H2AZ2	MULTI-MSMS	HCT116MG_D190212_S3	3	1017.5474853515625	1	1017.54627	1016.53899	0.8445	0.00085932	0.45885	0.0004669	1.3034	0.0013262	1017.5462313458937	44.822	0.12576	44.513	44.451	44.576	-0.30927					4	2	2	0	0	0	0.0096523	1	16788	16788		114.2	47.745	1	4871300			8211	2048	4614	4649	7950	7950					0.031383131409029374
EELDSLIKA	9	Unmodified	_EELDSLIKA_					0	0	0		nc|ENSG00000105968|Q71UI9-3|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-3|H2AZ2	MULTI-MSMS	HCT116MG_D190212_S4	4	509.2767333984375	2	509.276772	1016.53899	0.20595	0.00010488	0.12367	6.2983E-05	0.32962	0.00016787	509.27671314983	44.883	0.32932	44.509	44.405	44.735	-0.37326					33	13	3	0	0	0	0.0053819	1	16520	16520		134.3	59.367	1	45469000			8212	2048	4614	4649	7951	7951					0.031383131409029374
EELDSLIKA	9	Unmodified	_EELDSLIKA_					0	0	0		nc|ENSG00000105968|Q71UI9-3|H2AZ2;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511319.5_1_4:100869621-100871200:-|nuORF	nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-3|H2AZ2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1017.54627	1016.53899	0.99867	0.0010162	-0.55981	-0.00056963	0.43886	0.00044656	1017.5456742525007	44.593	0.31482	44.508	44.376	44.691	-0.084797	-0.002253	-5.7434E-05	NaN	114.2	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37186000			8213	2048	4614	4649							0.031383131409029374
EELEKLQQY	9	Unmodified	_EELEKLQQY_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S1	1	590.2967529296875	2	590.298236	1178.58192	0.673	0.00039727	-0.16908	-9.9808E-05	0.50392	0.00029746	590.2982677699583	34.467	0.26046	34.467	34.285	34.545	0					11	4	4	0	0	0	0.0034935	1	12791	12791		166.45	83.918	1	42159000			8214	1495	4615	4650	7952	7952					-0.00022916801663086517
EELEKLQQY	9	Unmodified	_EELEKLQQY_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S2	2	590.2988891601562	2	590.298236	1178.58192	0.86044	0.00050792	0.18709	0.00011044	1.0475	0.00061835	590.2983863638945	34.533	0.25758	34.358	34.228	34.485	-0.17462					12	4	4	0	0	0	0.031089	1	12856	12856		85.272	20.037	1	49545000			8215	1495	4615	4650	7953	7953					-0.00022916801663086517
EELEKLQQY	9	Unmodified	_EELEKLQQY_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S3	3	590.2987060546875	2	590.298236	1178.58192	0.33369	0.00019698	0.22314	0.00013172	0.55683	0.00032869	590.2984192424781	34.763	0.36434	34.466	34.336	34.7	-0.29707					13	6	3	0	0	0	0.0053819	1	12822	12822		134.3	62.373	1	19184000			8216	1495	4615	4650	7954	7954					-0.00022916801663086517
EELEKLQQY	9	Unmodified	_EELEKLQQY_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MSMS	HCT116MG_D190212_S4	4	590.2994384765625	2	590.298236	1178.58192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.867	1	34.481	33.981	34.981	-0.38606								0	0	0	0.0026876	1	12748	12748		123.45	63.377	1				8217	1495	4615	4650	7955	7955					-0.00022916801663086517
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	HCT116MG_D190212_S1	1	601.783203125	2	601.782418	1201.55028	0.55562	0.00033436	-0.44367	-0.00026699	0.11194	6.7366E-05	601.7825915189372	31.657	0.20851	31.657	31.544	31.753	0					6	3	2	0	0	0	0.061422	1	11676	11676		69.105	30.929	1	4597000			8218	2467	4616	4651	7956	7956					-0.0424290955561446
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	HCT116MG_D190212_S2	2	601.7835083007812	2	601.782418	1201.55028	0.87877	0.00052883	-0.58903	-0.00035447	0.28973	0.00017436	601.7825281728649	31.863	0.25806	31.614	31.458	31.716	-0.24883					9	4	3	0	0	0	0.012596	1	11784	11784		106.94	40.483	1	20359000			8219	2467	4616	4651	7957	7957					-0.0424290955561446
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	HCT116MG_D190212_S3	3	601.7828369140625	2	601.782418	1201.55028	0.45772	0.00027545	0.25335	0.00015246	0.71108	0.00042791	601.7826166354054	32.038	0.31178	31.76	31.578	31.89	-0.27841					8	5	2	0	0	0	0.0063854	1	11739	11739		125.53	52.561	1	17418000			8220	2467	4616	4651	7958	7958					-0.0424290955561446
EELEQKYTY	9	Unmodified	_EELEQKYTY_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	HCT116MG_D190212_S4	4	601.7830810546875	2	601.782418	1201.55028	1.1521	0.00069331	-0.1985	-0.00011945	0.9536	0.00057386	601.7822041707711	32.095	0.2077	31.72	31.59	31.797	-0.37529					6	3	2	0	0	0	0.053544	1	11694	11694		72.968	23.414	1	5359800			8221	2467	4616	4651	7959	7959					-0.0424290955561446
EELEYHDT	8	Unmodified	_EELEYHDT_					0	0	0		RP1|p.N1473Y|1|0.18|ENSG00000104237|chr8:54628299-54628299|A/T|missense_variant	RP1|p.N1473Y|1|0.18|ENSG00000104237|chr8:54628299-54628299|A/T|missense_variant	RP1|p.N1473Y|1|0.18|ENSG00000104237|chr8:54628299-54628299|A/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	518.2152099609375	2	518.216911	1034.41927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.063	1	40.994	40.494	41.494	-0.068649								0	0	0	0.43258	1	15504	15504		46.921	6.4723	1				8222	18121	4617	4652	7960	7960					-0.09656300203664614
EELFARKF	8	Unmodified	_EELFARKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	HCT116MG_D190212_S1	1	520.2474975585938	2	520.282192	1038.54983	0.17792	9.257E-05	-0.034894	-1.8155E-05	0.14303	7.4416E-05	520.2820283041725	39.32	0.13835	39.32	39.259	39.398	0					6	2	3	0	0	0	0.065665	1	14770	14770		78.149	32.128	1	18451000			8223	3710	4618	4653	7961	7961					0.03209760305844611
EELFARKF	8	Unmodified	_EELFARKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	HCT116MG_D190212_S2	2	520.248046875	2	520.282192	1038.54983	0.50307	0.00026174	0.25129	0.00013074	0.75436	0.00039248	520.2822558779372	39.33	0.30928	39.252	39.07	39.379	-0.077835					10	5	3	0	0	0	0.0076205	1	14801	14801		125.62	61.388	1	99117000			8224	3710	4618	4653	7962	7962					0.03209760305844611
EELFARKF	8	Unmodified	_EELFARKF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2816772460938	2	520.282192	1038.54983	0.24073	0.00012525	-0.60021	-0.00031228	-0.35948	-0.00018703	520.2818422183848	39.572	0.23475	39.271	39.087	39.322	-0.30137					8	4	2	0	0	0	0.44484	1	14710	14710		46.021	17.534	1	38440000			8225	3710	4618	4653	7963	7963					0.03209760305844611
EELFFRVLP	9	Unmodified	_EELFFRVLP_					0	0	0			REV__nc|ENSG00000060491|Q9NZT2-2|OGFR	REV__nc|ENSG00000060491|Q9NZT2-2|OGFR	MSMS	HCT116MG_D190212_S4	4	575.3170776367188	2	575.318774	1148.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.303	1	36.919	36.419	37.419	-0.3839								0	0	0	0.76777	1	13684	13684		13.508	4.9146	1		+		8226	10668	4619	4654	7964	7964					0.054628890284675435
EELFHLAKE	9	Unmodified	_EELFHLAKE_					0	0	0			REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	558.29052734375	2	558.290214	1114.56587	0.75063	0.00041907	0.033127	1.8495E-05	0.78376	0.00043757	558.2901727761486	36.018	0.20671	35.89	35.761	35.967	-0.12799					5	3	2	0	0	0	0.26031	1	13483	13483		34.932	5.8505	1	24519000	+		8227	15507	4620	4655	7965	7965					0.013174217520599996
EELFHLAKE	9	Unmodified	_EELFHLAKE_					0	0	0			REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	558.291015625	2	558.290214	1114.56587	0.43214	0.00024126	-0.11071	-6.1809E-05	0.32143	0.00017945	558.290380122198	36.314	0.1969	35.929	35.773	35.97	-0.38558					8	3	3	0	0	0	0.19461	1	13288	13288		41.84	0	1	3004100	+		8228	15507	4620	4655	7966	7966					0.013174217520599996
EELFHLAKE	9	Unmodified	_EELFHLAKE_					0	0	0			REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	558.290214	1114.56587	0.75063	0.00041907	0.033127	1.8495E-05	0.78376	0.00043757	558.2901727761486	36.018	0.20671	35.89	35.761	35.967	-0.12799	-0.01288	9.5811E-05	NaN	41.84	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24519000	+		8229	15507	4620	4655							0.013174217520599996
EELFHLAKE	9	Unmodified	_EELFHLAKE_					0	0	0			REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	558.290214	1114.56587	0.0089329	4.9872E-06	0.080865	4.5146E-05	0.089797	5.0133E-05	558.2905398079417	36.19	0.20826	35.889	35.729	35.938	-0.30042	-0.01321	0.00014911	NaN	41.84	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7019100	+		8230	15507	4620	4655							0.013174217520599996
EELGHTETY	9	Unmodified	_EELGHTETY_					0	0	0		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	540.239990234375	2	539.738011	1077.46147	0.63192	0.00034107	0.16417	8.8609E-05	0.79609	0.00042968	539.7380171995887	26.042	0.26094	26.042	25.927	26.188	0					9	4	3	0	0	0	0.0047811	1	9406	9406		139.54	88.689	1	14769000			8231	1144	4621	4656	7967	7967					-0.07416324795258333
EELGHTETY	9	Unmodified	_EELGHTETY_					0	0	0		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7385864257812	2	539.738011	1077.46147	0.42864	0.00023135	0.20551	0.00011092	0.63415	0.00034228	539.738130919714	26.433	0.31092	26.072	25.921	26.232	-0.36164					15	5	4	0	0	0	0.004194	1	9569	9569		147.83	96.976	1	38960000			8232	1144	4621	4656	7968	7968					-0.07416324795258333
EELGHTETY	9	Unmodified	_EELGHTETY_					0	0	0		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7382202148438	2	539.738011	1077.46147	0.58533	0.00031592	-0.089216	-4.8153E-05	0.49611	0.00026777	539.7378463345766	26.274	0.36483	26.124	25.942	26.307	-0.14924					13	6	3	0	0	0	0.0034599	1	9422	9422		162.95	112.1	1	24027000			8233	1144	4621	4656	7969	7969					-0.07416324795258333
EELGHTETY	9	Unmodified	_EELGHTETY_					0	0	0		ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	539.73828125	2	539.738011	1077.46147	0.3391	0.00018303	0.26551	0.00014331	0.60462	0.00032634	539.7379711029107	26.508	0.26001	26.208	26.026	26.286	-0.30087					7	4	2	0	0	0	0.031005	1	9457	9457		85.357	49.313	1	5376100			8234	1144	4621	4656	7970	7970					-0.07416324795258333
EELHKEVQ	8	Unmodified	_EELHKEVQ_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MSMS	HCT116MG_D190212_S4	4	506.25830078125	2	506.258914	1010.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.328	1	18.148	17.648	18.648	-0.18052								0	0	0	0.76512	1	6144	6144		25.399	0	1				8235	3683	4622	4657	7971	7971					-0.0015572431609598425
EELHLIVY	8	Unmodified	_EELHLIVY_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000485620.1_1_7:6851426-6854399:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2767639160156	2	508.276575	1014.5386	0.38057	0.00019344	0.043639	2.2181E-05	0.42421	0.00021562	508.2764566351337	51.583	0.30864	51.399	51.218	51.527	-0.18369					9	5	2	0	0	0	0.13911	2	19801	19742;19801		86.121	47.97	1	54369000			8236	2776	4623	4658	7972;7973	7973					0.03190938211707817
EELHLIVY	8	Unmodified	_EELHLIVY_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000485620.1_1_7:6851426-6854399:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MSMS	HCT116MG_D190212_S3	3	508.27655029296875	2	508.276575	1014.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.851	1	51.542	51.042	52.042	-0.30927								0	0	0	0.38355	1	19587	19587		49.669	6.7009	1				8237	2776	4623	4658	7974	7974					0.03190938211707817
EELIARQLY	9	Unmodified	_EELIARQLY_					0	0	0			REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant	REV__B3GALT2|p.S320Ffs*10|1|0.36|ENSG00000162630|chr1:193180604-193180605|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	567.8115844726562	2	567.811313	1133.60807	0.41562	0.00023599	-0.070278	-3.9905E-05	0.34534	0.00019609	567.8110787509381	34.571	0.20774	34.571	34.441	34.649	0					7	3	3	0	0	0	0.057285	1	12857	12857		71.134	0.80159	1	14122000	+		8238	10023	4624	4659	7975	7975					0.04661397160475644
EELIIEDPSK	10	Unmodified	_EELIIEDPSK_					0	0	0			REV__ENSG00000188620|ENST00000357878|HMX3	REV__ENSG00000188620|ENST00000357878|HMX3	MULTI-MSMS	HCT116MG_D190212_S2	2	586.8048706054688	2	586.805894	1171.59723	0.41741	0.00024494	-2.2145	-0.0012995	-1.7971	-0.0010546	586.8043617540942	14.486	0.20744	14.166	14.037	14.244	-0.31952					8	3	3	0	0	0	0.77749	1	4770	4770		13.906	0	1	5229700	+		8239	13964	4625	4660	7976	7976					0.018299499954991916
EELKFRKQRRL	11	Unmodified	_EELKFRKQRRL_					0	0	0			REV__ENSG00000170608|ENST00000302177|FOXA3	REV__ENSG00000170608|ENST00000302177|FOXA3	MULTI-SECPEP	HCT116MG_D190212_S3	3	501.27923583984375	3	501.63532	1501.88413	0.37615	0.00018869	-2.6906	-0.0013497	-2.3145	-0.001161	501.968936019294	54.275	0.31376	53.979	53.877	54.19	-0.29587					6	5	2	0	0	0	0.3662	1	20612	20612		1.2148	0.84816	1	1288100	+		8240	13309	4626	4661	7977	7977					0.15326268728199466
EELKFRKQRRL	11	Unmodified	_EELKFRKQRRL_					0	0	0			REV__ENSG00000170608|ENST00000302177|FOXA3	REV__ENSG00000170608|ENST00000302177|FOXA3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	501.63532	1501.88413	0.43536	0.00021839	-2.0971	-0.001052	-1.6617	-0.00083359	501.9686676448374	54.307	0.67736	53.984	53.619	54.296	-0.32348	-0.090829	-0.00040685	NaN	2.6312	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4706700	+		8241	13309	4626	4661							0.15326268728199466
EELKKANAA	9	Unmodified	_EELKKANAA_					0	0	0		nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1;ENST00000465876.5_1_1:60281005-60331594:+|nuORF	nc|ENSG00000134709|Q9UJC3-2|HOOK1	nc|ENSG00000134709|Q9UJC3-2|HOOK1	MULTI-MSMS	HCT116MG_D190212_S2	2	487.2694396972656	2	487.269281	972.52401	0.075296	3.6689E-05	0.20744	0.00010108	0.28274	0.00013777	487.26930392263404	15.32	0.20865	14.993	14.863	15.071	-0.32684					5	3	2	0	0	0	0.0077497	1	5089	5089		118.89	61.423	1	4217200			8242	3298	4627	4662	7978	7978					0.036648660635478336
EELKKMIAP	9	Unmodified	_EELKKMIAP_					0	0	0			REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4	REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MSMS	HCT116MG_D190212_S4	4	529.797119140625	2	529.79936	1057.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.21	1	26.899	26.399	27.399	-0.3114								0	0	0	0.50556	1	9730	9730		28.487	8.0332	1		+		8243	11331	4628	4663	7979	7979					0.057678404024500196
EELKKQQSP	9	Unmodified	_EELKKQQSP_					0	0	0			REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	543.79345703125	2	543.793121	1085.57169	0.36283	0.00019731	0.28353	0.00015418	0.64636	0.00035149	543.7932233589098	15.268	0.26072	14.941	14.758	15.019	-0.32684					7	4	2	0	0	0	0.056114	1	5073	5073		71.708	0	1	3238500	+		8244	10050	4629	4664	7980	7980					0.032325202637593975
EELKQLATA	9	Unmodified	_EELKQLATA_					0	0	0			REV__nc|ENSG00000167460|P67936-2|TPM4;REV__nc|ENSG00000198467|P07951-2|TPM2	REV__nc|ENSG00000198467|P07951-2|TPM2	MULTI-MSMS	HCT116MG_D190212_S4	4	502.278564453125	2	501.776939	1001.53933	0.32038	0.00016076	-0.3918	-0.0001966	-0.071423	-3.5838E-05	501.7769944986782	29.622	0.36407	29.273	29.085	29.449	-0.34921					11	6	3	0	0	0	0.14171	1	10718	10718		49.933	2.1843	1	4608700	+	+	8245	17199;10269	4630	4665	7981	7981					0.03861732860752909
EELKQLATA	9	Unmodified	_EELKQLATA_					0	0	0			REV__nc|ENSG00000167460|P67936-2|TPM4;REV__nc|ENSG00000198467|P07951-2|TPM2	REV__nc|ENSG00000198467|P07951-2|TPM2	MULTI-SECPEP	HCT116MG_D190212_S4	4	501.2436218261719	2	501.776939	1001.53933	0.32038	0.00016076	-0.3918	-0.0001966	-0.071423	-3.5838E-05	501.7769944986782	29.622	0.36407	29.273	29.085	29.449	-0.34921					11	6	3	0	0	0	0.11928	1	10736	10736		58.679	4.846	1	4608700	+	+	8246	17199;10269	4630	4665	7982	7982					0.03861732860752909
EELKQLATA	9	Unmodified	_EELKQLATA_					0	0	0			REV__nc|ENSG00000167460|P67936-2|TPM4;REV__nc|ENSG00000198467|P07951-2|TPM2	REV__nc|ENSG00000198467|P07951-2|TPM2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	501.776939	1001.53933	0.68824	0.00034534	-2.6337	-0.0013215	-1.9454	-0.00097618	501.7766143272252	29.46	0.25827	29.159	29.031	29.289	-0.30095	-0.060417	-0.0021496	NaN	49.933	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8394600	+	+	8247	17199;10269	4630	4665							0.03861732860752909
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.88824462890625	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.75154	1	0.75154	0.25154	1.2515	0								0	0	0	0.96208	1	238	238		0	0	1		+		8248	15362	4631	4666	7983	7983					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	431.06805419921875	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2188	1	1.2188	0.71879	1.7188	0								0	0	0	0.96208	1	372	372		0	0	1		+		8249	15362	4631	4666	7984	7984					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.88775634765625	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.273	1	1.273	0.77298	1.773	0								0	0	0	0.96208	1	392	392		0	0	1		+		8250	15362	4631	4666	7985	7985					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	431.0682373046875	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7232	1	1.7232	1.2232	2.2232	0								0	0	0	0.96208	1	520	520		0	0	1		+		8251	15362	4631	4666	7986	7986					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.88824462890625	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7925	1	1.7925	1.2925	2.2925	0								0	0	0	0.96208	1	543	543		0	0	1		+		8252	15362	4631	4666	7987	7987					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	431.0683898925781	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2437	1	2.2437	1.7437	2.7437	0								0	0	0	0.96208	1	678	678		0	0	1		+		8253	15362	4631	4666	7988	7988					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.887939453125	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2998	1	2.2998	1.7998	2.7998	0								0	0	0	0.96208	1	696	696		0	0	1		+		8254	15362	4631	4666	7989	7989					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.8882751464844	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3715	1	3.3715	2.8715	3.8715	0								0	0	0	0.96208	1	1014	1014		0	0	1		+		8255	15362	4631	4666	7990	7990					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.8879699707031	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5521	1	8.5521	8.0521	9.0521	0								0	0	0	0.96208	1	2583	2583		0	0	1		+		8256	15362	4631	4666	7991	7991					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.88800048828125	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0803	1	9.0803	8.5803	9.5803	0								0	0	0	0.96208	1	2748	2748		0	0	1		+		8257	15362	4631	4666	7992	7992					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.88800048828125	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.511	1	64.511	64.011	65.011	0								0	0	0	0.96208	1	24881	24881		0	0	1		+		8258	15362	4631	4666	7993	7993					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	431.0680847167969	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6716	1	1.6584	1.1584	2.1584	-0.013221								0	0	0	0.96208	1	541	541		0	0	1		+		8259	15362	4631	4666	7994	7994					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.8882751464844	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8592	1	1.846	1.346	2.346	-0.013221								0	0	0	0.96208	1	602	602		0	0	1		+		8260	15362	4631	4666	7995	7995					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	431.0680847167969	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.1924	1	2.1681	1.6681	2.6681	-0.024288								0	0	0	0.96208	1	715	715		0	0	1		+		8261	15362	4631	4666	7996	7996					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.88824462890625	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.4983	1	2.474	1.974	2.974	-0.024288								0	0	0	0.96208	1	803	803		0	0	1		+		8262	15362	4631	4666	7997	7997					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.88787841796875	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0098	1	2.9695	2.4695	3.4695	-0.040353								0	0	0	0.96208	1	963	963		0	0	1		+		8263	15362	4631	4666	7998	7998					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.8880310058594	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0824	1	3.042	2.542	3.542	-0.040353								0	0	0	0.96208	1	982	982		0	0	1		+		8264	15362	4631	4666	7999	7999					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.8883972167969	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5195	1	3.4573	2.9573	3.9573	-0.062129								0	0	0	0.96208	1	1116	1116		0	0	1		+		8265	15362	4631	4666	8000	8000					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.8883361816406	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5852	1	3.5231	3.0231	4.0231	-0.062129								0	0	0	0.96208	1	1133	1133		0	0	1		+		8266	15362	4631	4666	8001	8001					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.88818359375	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.1747	1	5.0559	4.5559	5.5559	-0.11871								0	0	0	0.96208	1	1633	1633		0	0	1		+		8267	15362	4631	4666	8002	8002					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.88818359375	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6841	1	5.5359	5.0359	6.0359	-0.14816								0	0	0	0.96208	1	1801	1801		0	0	1		+		8268	15362	4631	4666	8003	8003					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.8878479003906	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3482	1	7.1324	6.6324	7.6324	-0.21581								0	0	0	0.96208	1	2303	2303		0	0	1		+		8269	15362	4631	4666	8004	8004					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.8881530761719	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4308	1	8.1997	7.6997	8.6997	-0.23116								0	0	0	0.96208	1	2638	2638		0	0	1		+		8270	15362	4631	4666	8005	8005					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.88824462890625	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9861	1	8.7421	8.2421	9.2421	-0.24401								0	0	0	0.96208	1	2811	2811		0	0	1		+		8271	15362	4631	4666	8006	8006					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.88836669921875	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.238	1	9.9736	9.4736	10.474	-0.26472								0	0	0	0.96208	1	3228	3228		0	0	1		+		8272	15362	4631	4666	8007	8007					0.009234324664475935
EELLISLIEEC	11	Unmodified	_EELLISLIEEC_					0	0	0			REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	REV__ENST00000450964.1_1_9:34125177-34125690:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.8880920410156	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.295	1	13.983	13.483	14.483	-0.31202								0	0	0	0.96208	1	4669	4669		0	0	1		+		8273	15362	4631	4666	8008	8008					0.009234324664475935
EELLLNSY	8	Unmodified	_EELLLNSY_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	980.494384765625	1	980.493504	979.486227	1.0178	0.00099791	0.057604	5.648E-05	1.0754	0.0010544	980.493697832043	48.552	0.3638	48.236	47.984	48.348	-0.31596					12	6	3	0	0	0	0.024625	1	18285	18285		205.38	0	1	12665000	+		8274	17730	4632	4667	8009	8009					-0.004336449219067617
EELLRHVAP	9	Unmodified	_EELLRHVAP_					0	0	0		ENST00000531912.1_1_11:613200-613578:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000533182.5_1_11:612647-613950:-|nuORF;IRF7|p.P384Qfs*68|2|0.31|ENSG00000185507|chr11:613297-613297|T/-|frameshift_variant;nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7	ENST00000531912.1_1_11:613200-613578:-|nuORF	ENST00000531912.1_1_11:613200-613578:-|nuORF	MSMS	HCT116MG_D190212_S3	3	532.2960205078125	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.228	1	25.122	24.622	25.622	-0.10618								0	0	0	0.76781	1	8997	8997		8.5933	1.304	1				8275	5832	4633	4668	8010	8010					0.053405477088290354
EELNDMDDY	9	Unmodified	_EELNDMDDY_					0	0	0		PHF14|p.M316Wfs*5|1|0.43|ENSG00000106443|chr7:10990743-10990743|A/-|frameshift_variant;ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14	PHF14|p.M316Wfs*5|1|0.43|ENSG00000106443|chr7:10990743-10990743|A/-|frameshift_variant	PHF14|p.M316Wfs*5|1|0.43|ENSG00000106443|chr7:10990743-10990743|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	572.2114868164062	2	572.210969	1142.40738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.375	1	39.074	38.574	39.574	-0.30137								0	0	0	0.64498	1	14614	14614		21.747	9.2151	1				8276	2079	4634	4669	8011	8011					-0.15812285009155858
EELNKKRTQKE	11	Unmodified	_EELNKKRTQKE_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MSMS	HCT116MG_D190212_S3	3	701.8844604492188	2	701.886072	1401.75759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.22	1	45.908	45.408	46.408	-0.31237								0	0	0	0.94012	1	17325	17325		11.495	2.1116	1				8277	3327	4635	4670	8012	8012					0.07278297712400672
EELNKLIQ	8	Unmodified	_EELNKLIQ_					0	0	0		ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	MULTI-MSMS	HCT116MG_D190212_S3	3	493.7796630859375	2	493.779482	985.544411	0.397	0.00019603	-0.03377	-1.6675E-05	0.36323	0.00017936	493.7794106647291	44.197	0.46714	43.89	43.708	44.175	-0.30759					24	8	4	0	0	0	0.033255	1	16495	16495		142.08	23.185	1	185660000			8278	5605	4636	4671	8013	8013					0.05106036723384477
EELNKLIQ	8	Unmodified	_EELNKLIQ_					0	0	0		ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	MULTI-MSMS	HCT116MG_D190212_S4	4	493.77960205078125	2	493.779482	985.544411	0.24476	0.00012086	0.10968	5.4157E-05	0.35444	0.00017502	493.77947861469136	44.231	0.39418	43.858	43.675	44.069	-0.37373					23	7	4	0	0	0	0.66231	1	16281	16281		26.884	5.137	1	70948000			8279	5605	4636	4671	8014	8014					0.05106036723384477
EELNKLIQ	8	Unmodified	_EELNKLIQ_					0	0	0		ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	493.779482	985.544411	0.22169	0.00010947	0.25591	0.00012636	0.4776	0.00023583	493.77959146969675	43.961	0.25573	43.961	43.833	44.088	0	0.074508	0.00022849	NaN	142.08	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60131000			8280	5605	4636	4671							0.05106036723384477
EELNKLIQ	8	Unmodified	_EELNKLIQ_					0	0	0		ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	493.779482	985.544411	0.32841	0.00016216	-0.070495	-3.4809E-05	0.25792	0.00012736	493.7793767241978	43.917	0.46225	43.839	43.659	44.121	-0.078373	-0.047851	-9.3846E-05	NaN	142.08	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316480000			8281	5605	4636	4671							0.05106036723384477
EELNVFER	8	Unmodified	_EELNVFER_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.D3074Ffs*8|1|0.07|ENSG00000054654|chr14:64053132-64053133|-/TTTCTTTTTCAAATACTTG|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	518.2581787109375	2	518.258914	1034.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.694	1	41.391	40.891	41.891	-0.30257								0	0	0	0.8837	1	15510	15510		15.847	2.3393	1				8282	1073	4637	4672	8015	8015					-0.012597243161053484
EELPAQRY	8	Unmodified	_EELPAQRY_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-MSMS	HCT116MG_D190212_S3	3	503.25421142578125	2	503.253631	1004.49271	0.57876	0.00029126	1.4104	0.00070979	1.9892	0.0010011	503.2541800272066	28.586	0.36443	28.38	28.177	28.541	-0.20593					10	6	2	0	0	0	0.41924	1	10367	10367		48.346	10.372	1	8418300			8283	6263	4638	4673	8016	8016					-0.009357069705288268
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	546.7774658203125	2	546.777274	1091.53999	0.54453	0.00029774	-0.20301	-0.000111	0.34152	0.00018674	546.7771660430531	42.002	0.36511	42.002	41.758	42.123	0					18	6	4	0	0	0	0.0048275	1	15833	15833		179.23	104.81	1	35484000			8284	5083	4639	4674	8017	8017					-0.002114276995371256
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	365.23291015625	3	364.853941	1091.53999	-0.056908	-2.0763E-05	-0.42351	-0.00015452	-0.48042	-0.00017528	364.8537977682091	42.02	0.26122	42.02	41.81	42.071	0					7	4	2	0	0	0	0.23177	1	15793	15793		13.906	1.6654	1	12846000			8285	5083	4639	4674	8018	8018					-0.002114276995371256
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	546.777587890625	2	546.777274	1091.53999	0.49685	0.00027167	0.035602	1.9466E-05	0.53246	0.00029114	546.7772669031391	41.962	0.46747	41.894	41.653	42.12	-0.068199					25	8	4	0	0	0	0.0044301	1	15832	15832		189.49	135.92	1	169500000			8286	5083	4639	4674	8019	8019					-0.002114276995371256
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	364.8537902832031	3	364.853941	1091.53999	-0.16226	-5.92E-05	0.13524	4.9342E-05	-0.027019	-9.8579E-06	364.8538940542151	41.972	0.51978	41.904	41.601	42.12	-0.068199					21	9	3	0	0	0	0.45867	1	15855	15855		19.257	19.257	1	67476000			8287	5083	4639	4674	8020	8020					-0.002114276995371256
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	546.7777099609375	2	546.777274	1091.53999	0.49126	0.00026861	-0.15348	-8.3922E-05	0.33778	0.00018469	546.7771939231358	42.219	0.36406	41.915	41.728	42.092	-0.30352					16	6	3	0	0	0	0.0044301	1	15742	15742		189.49	141.15	1	9669800			8288	5083	4639	4674	8021	8021					-0.002114276995371256
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	546.7771606445312	2	546.777274	1091.53999	0.53419	0.00029208	-0.014437	-7.894E-06	0.51975	0.00028419	546.777269975326	42.344	0.25936	41.968	41.787	42.046	-0.37565					7	4	2	0	0	0	0.069315	1	15557	15557		86.121	64.375	1	2609800			8289	5083	4639	4674	8022	8022					-0.002114276995371256
EELPHIHAF	9	Unmodified	_EELPHIHAF_					0	0	0		ENST00000567436.1_1_16:30204298-30204508:-|nuORF;ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	ENST00000567436.1_1_16:30204298-30204508:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	364.853941	1091.53999	-0.032473	-1.1848E-05	-0.3795	-0.00013846	-0.41197	-0.00015031	364.8537895904307	42.196	0.31206	41.892	41.78	42.092	-0.30352	-0.04641	-0.00023827	NaN	19.257	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3601100			8290	5083	4639	4674							-0.002114276995371256
EELPRAEGA	9	Unmodified	_EELPRAEGA_					0	0	0		ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	MULTI-MSMS	HCT116MG_D190212_S2	2	486.24334716796875	2	486.243264	970.471974	0.23631	0.00011491	0.12047	5.8578E-05	0.35679	0.00017348	486.24331882918364	24.89	0.31107	24.515	24.349	24.66	-0.37521					8	5	2	0	0	0	0.0080847	1	8959	8959		118.07	36.178	1	16489000			8291	5535	4640	4675	8023	8023					-0.014442973502013956
EELPRAEGA	9	Unmodified	_EELPRAEGA_					0	0	0		ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	MULTI-MSMS	HCT116MG_D190212_S3	3	486.24359130859375	2	486.243264	970.471974	0.16741	8.1403E-05	0.29372	0.00014282	0.46113	0.00022422	486.2433537289479	24.659	0.36441	24.575	24.341	24.705	-0.083694					11	6	2	0	0	0	0.0055242	1	8773	8773		133.05	29.304	1	7383700			8292	5535	4640	4675	8024	8024					-0.014442973502013956
EELPRAEGA	9	Unmodified	_EELPRAEGA_					0	0	0		ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	486.243264	970.471974	0.1252	6.0876E-05	0.74037	0.00036	0.86557	0.00042088	486.2435537264568	24.844	0.25944	24.575	24.393	24.653	-0.26881	0.019899	0.00034975	NaN	133.05	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3713200			8293	5535	4640	4675							-0.014442973502013956
EELQARYP	8	Unmodified	_EELQARYP_					0	0	0		ENST00000497655.1_1_1:202932056-202932895:-|nuORF;CYB5R1|p.K248Gfs*27|1|0.05|ENSG00000159348|chr1:202963069-202963070|-/GGGTTCC|frameshift_variant;ENSG00000159348|ENST00000367249|CYB5R1	ENST00000497655.1_1_1:202932056-202932895:-|nuORF	ENST00000497655.1_1_1:202932056-202932895:-|nuORF	MSMS	HCT116MG_D190212_S4	4	503.2452087402344	2	503.253631	1004.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.851	1	28.511	28.011	29.011	-0.34059								0	0	0	0.8396	1	10393	10393		19.439	1.304	1				8294	623	4641	4676	8025	8025					-0.009357069705401955
EELQKIYKT	9	Unmodified	_EELQKIYKT_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	HCT116MG_D190212_S2	2	576.3193359375	2	576.318971	1150.62339	0.38541	0.00022212	-0.33628	-0.0001938	0.04913	2.8314E-05	576.3188855305694	27.766	0.20613	27.424	27.243	27.449	-0.34201					6	3	2	0	0	0	0.060947	1	10108	10108		69.338	29.381	1	65994000			8295	3338	4642	4677	8026	8026					0.054102639576512956
EELQKIYKT	9	Unmodified	_EELQKIYKT_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	HCT116MG_D190212_S3	3	576.3067016601562	2	576.318971	1150.62339	0.63764	0.00036748	-0.5448	-0.00031398	0.09284	5.3506E-05	576.3184173316824	27.679	0.4159	27.491	27.361	27.777	-0.18847					12	7	3	0	0	0	0.20897	1	9965	9965		23.79	9.8837	1	17718000			8296	3338	4642	4677	8027	8027					0.054102639576512956
EELQKIYKT	9	Unmodified	_EELQKIYKT_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	HCT116MG_D190212_S4	4	576.3063354492188	2	576.318971	1150.62339	0.42724	0.00024623	0.98824	0.00056954	1.4155	0.00081577	576.3196647312255	27.849	0.30204	27.528	27.252	27.554	-0.32157					8	5	3	0	0	0	0.16227	1	9993	9993		47.732	43.203	1	8284200			8297	3338	4642	4677	8028	8028					0.054102639576512956
EELQKVAA	8	Unmodified	_EELQKVAA_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	444.24517822265625	2	444.245275	886.475997	0.070975	3.153E-05	-0.096246	-4.2757E-05	-0.025271	-1.1226E-05	444.24503158346016	25.652	0.20714	25.283	25.187	25.394	-0.36914					5	3	2	0	0	0	0.48901	1	9280	9280		42.095	4.1206	1	7079000	+		8298	10417	4643	4678	8029	8029					0.028217921435157223
EELQLEKRMT	10	Oxidation (M)	_EELQLEKRM(Oxidation (M))T_		EELQLEKRM(1)T		EELQLEKRM(77)T	0	0	1			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	MSMS	HCT116MG_D190212_S1	1	646.8272705078125	2	646.829377	1291.6442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.443	1	38.443	37.943	38.943	0								0	0	0	0.12748	1	14393	14393		76.825	23.421	1		+		8299	17237	4644	4679	8030	8030		165			0.010044862749964523
EELQLEKRMT	10	Oxidation (M)	_EELQLEKRM(Oxidation (M))T_		EELQLEKRM(1)T		EELQLEKRM(68)T	0	0	1			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	MSMS	HCT116MG_D190212_S2	2	646.8282470703125	2	646.829377	1291.6442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.469	1	38.381	37.881	38.881	-0.088333								0	0	0	0.20883	1	14453	14453		67.838	8.4698	1		+		8300	17237	4644	4679	8031	8031		165			0.010044862749964523
EELQLEKRMT	10	Oxidation (M)	_EELQLEKRM(Oxidation (M))T_		EELQLEKRM(1)T		EELQLEKRM(60)T	0	0	1			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	MULTI-MSMS	HCT116MG_D190212_S3	3	646.8280639648438	2	646.829377	1291.6442	0.45164	0.00029213	-2.0275	-0.0013115	-1.5759	-0.0010193	646.8277812964626	38.68	0.26057	38.378	38.248	38.508	-0.30137					8	4	2	0	0	0	0.19283	1	14346	14346		60.074	8.4441	1	7931500	+		8301	17237	4644	4679	8032	8032		165			0.010044862749964523
EELQLEKRMT	10	Oxidation (M)	_EELQLEKRM(Oxidation (M))T_					0	0	1			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	646.829377	1291.6442	0.45164	0.00029213	-2.0275	-0.0013115	-1.5759	-0.0010193	646.8277812964626	38.68	0.26057	38.378	38.248	38.508	-0.30137	-0.0040326	0.00090162	NaN	60.074	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7931500	+		8302	17237	4644	4679				165			0.010044862749964523
EELQQKVSY	9	Unmodified	_EELQQKVSY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	HCT116MG_D190212_S2	2	562.2853393554688	2	562.285128	1122.5557	0.48672	0.00027368	0.28226	0.00015871	0.76898	0.00043239	562.2849748180372	29.205	0.30628	28.888	28.761	29.067	-0.31613					9	5	3	0	0	0	0.0038512	1	10710	10710		152.89	87.651	1	49615000			8303	5022	4645	4680	8033	8033					-0.0006718597312556085
EELQQKVSY	9	Unmodified	_EELQQKVSY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	HCT116MG_D190212_S3	3	562.2855834960938	2	562.285128	1122.5557	0.51368	0.00028884	0.34918	0.00019634	0.86287	0.00048518	562.2852642794847	29.294	0.5732	29.072	28.89	29.463	-0.22195					15	10	3	0	0	0	0.0035417	1	10639	10639		171.46	85.823	1	21486000			8304	5022	4645	4680	8034	8034					-0.0006718597312556085
EELQQKVSY	9	Unmodified	_EELQQKVSY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	HCT116MG_D190212_S4	4	562.285400390625	2	562.285128	1122.5557	0.21923	0.00012327	1.0227	0.00057507	1.242	0.00069834	562.2856647677906	29.408	0.3119	29.059	28.929	29.241	-0.34921					10	5	3	0	0	0	0.45867	1	10637	10637		19.257	1.1106	1	4768000			8305	5022	4645	4680	8035	8035					-0.0006718597312556085
EELQQKVSY	9	Unmodified	_EELQQKVSY_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	562.285128	1122.5557	0.63311	0.00035599	0.22094	0.00012423	0.85405	0.00048022	562.2852469651035	28.877	0.15666	28.877	28.798	28.955	0	-0.097063	-0.00028114	NaN	171.46	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4844300			8306	5022	4645	4680							-0.0006718597312556085
EELQRTPLP	9	Unmodified	_EELQRTPLP_					0	0	0		ENST00000215917.11_2_22:26887676-26887766:+|nuORF	ENST00000215917.11_2_22:26887676-26887766:+|nuORF	ENST00000215917.11_2_22:26887676-26887766:+|nuORF	MSMS	HCT116MG_D190212_S3	3	541.7953491210938	2	541.795663	1081.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.896	1	35.595	35.095	36.095	-0.30042								0	0	0	0.44802	1	13245	13245		31.268	9.7314	1				8307	6733	4646	4681	8036	8036					0.03924824126374915
EELQVLRGA	9	Unmodified	_EELQVLRGA_					0	0	0		ENST00000440314.6_1_12:3806177-3862241:-|nuORF	ENST00000440314.6_1_12:3806177-3862241:-|nuORF	ENST00000440314.6_1_12:3806177-3862241:-|nuORF	MSMS	HCT116MG_D190212_S3	3	507.78265380859375	2	507.782556	1013.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.357	1	39.056	38.556	39.556	-0.30137								0	0	0	0.56943	1	14608	14608		25.399	4.9457	1				8308	7914	4647	4682	8037	8037					0.044325549548943854
EELRAQVM	8	Unmodified	_EELRAQVM_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;EIF5B|p.Q1121Rfs*13|1|0.27|ENSG00000158417|chr2:99396867-99396868|AG/-|frameshift_variant	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MSMS	HCT116MG_D190212_S3	3	488.2503356933594	2	488.250034	974.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.855	1	32.57	32.07	33.07	-0.28511								0	0	0	0.67883	1	12057	12057		32.305	7.6316	1				8309	770	4648	4683	8038	8038					-0.0027476284260501416
EELRELLL	8	Unmodified	_EELRELLL_					0	0	0			REV__FGF1|p.F100L|1|0.31|ENSG00000113578|chr5:142595460-142595460|A/G|missense_variant	REV__FGF1|p.F100L|1|0.31|ENSG00000113578|chr5:142595460-142595460|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	507.7952880859375	2	507.795132	1013.57571	0.36338	0.00018452	0.22433	0.00011392	0.58771	0.00029844	507.7951597424546	51.171	0.36147	50.992	50.81	51.171	-0.17868					13	6	3	0	0	0	0.17427	1	19615	19615		78.728	0	1	50014000	+		8310	16819	4649	4684	8039	8039					0.06946609757483202
EELRQEWEA	9	Unmodified	_EELRQEWEA_					0	0	0		ENSG00000145945|ENST00000648326|FAM50B;ENST00000478509.1_1_X:153674748-153677371:+|nuORF;ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000071859|ENST00000393600|FAM50A	ENSG00000145945|ENST00000648326|FAM50B	ENSG00000145945|ENST00000648326|FAM50B	MULTI-MSMS	HCT116MG_D190212_S3	3	595.646728515625	2	595.277835	1188.54112	0.4944	0.00029431	-0.37615	-0.00022391	0.11826	7.0395E-05	595.2777258012234	35.952	0.20281	35.652	35.527	35.729	-0.30042					6	3	2	0	0	0	0.012531	2	13264	13264;13295		107.1	41.865	1	4884000			8311	3934	4650	4685	8040;8041	8040					-0.04561258121270839
EELRQQKEA	9	Unmodified	_EELRQQKEA_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S1	1	565.7938842773438	2	565.793652	1129.57275	0.37875	0.00021429	0.10496	5.9384E-05	0.48371	0.00027368	565.7936407020696	15.666	0.26019	15.666	15.536	15.796	0					9	4	3	0	0	0	0.031831	1	5242	5242		84.522	25.154	1	26036000			8312	1495	4651	4686	8042	8042					0.013147346326832121
EELRQQKEA	9	Unmodified	_EELRQQKEA_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S2	2	565.7940673828125	2	565.793652	1129.57275	0.30774	0.00017412	0.32249	0.00018246	0.63023	0.00035658	565.7938337834183	12.159	0.22526	11.869	11.717	11.942	-0.28953					10	6	2	0	0	0	0.068828	1	3963	3963		65.474	23.518	1	1411200			8313	1495	4651	4686	8043	8043					0.013147346326832121
EELRQQKEA	9	Unmodified	_EELRQQKEA_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	565.793652	1129.57275	0.34518	0.0001953	-0.017182	-9.7216E-06	0.328	0.00018558	565.7936580387219	15.945	0.73125	15.611	15.376	16.107	-0.33451	-0.027553	-2.2344E-05	NaN	84.522	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159120000			8314	1495	4651	4686							0.013147346326832121
EELRRGQPG	9	Unmodified	_EELRRGQPG_					0	0	0			REV__ENSG00000138131|ENST00000260702|LOXL4	REV__ENSG00000138131|ENST00000260702|LOXL4	MSMS	HCT116MG_D190212_S2	2	521.2765502929688	2	521.275429	1040.53631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.938	1	25.569	25.069	26.069	-0.36914								0	0	0	0.76694	1	9363	9363		11.64	1.5664	1		+		8315	12211	4652	4687	8044	8044					0.0176590252663118
EELRRREAH	9	Unmodified	_EELRRREAH_					0	0	0			REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	598.3185424804688	2	598.31816	1194.62177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.471	1	10.198	9.6977	10.698	-0.27365								0	0	0	0.76991	1	3314	3314		0.6015	0.6015	1		+		8316	11244	4653	4688	8045	8045					0.0322406771228998
EELRRSLV	8	Unmodified	_EELRRSLV_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2908020019531	2	501.290548	1000.56654	0.37928	0.00019013	-0.20092	-0.00010072	0.17836	8.941E-05	501.2904596236227	27.567	0.25822	27.567	27.438	27.696	0					6	4	2	0	0	0	0.30543	1	10032	10032		58.679	1.2075	1	13148000			8317	5549	4654	4689	8046	8046					0.06628261191804086
EELRRVVAA	9	Unmodified	_EELRRVVAA_					0	0	0		nc|ENSG00000289604|P0CG41|CTAGE8;nc|ENSG00000288784|Q8IX94|CTAGE4;ENSG00000271079|ENST00000420911|CTAGE15;ENST00000556148.5_3_14:39736663-39748542:+|nuORF;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;ENSG00000271321|ENST00000470691|CTAGE6;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2	nc|ENSG00000289604|P0CG41|CTAGE8	nc|ENSG00000289604|P0CG41|CTAGE8	MULTI-MSMS	HCT116MG_D190212_S2	2	521.803955078125	2	521.803823	1041.59309	0.44727	0.00023339	-0.19656	-0.00010257	0.25071	0.00013082	521.8037080162084	25.893	0.31153	25.524	25.343	25.654	-0.36914					11	5	3	0	0	0	0.01405	1	9347	9347		103.35	45.882	1	56272000			8318	6661	4655	4690	8047	8047					0.073959500831279
EELRRVVAA	9	Unmodified	_EELRRVVAA_					0	0	0		nc|ENSG00000289604|P0CG41|CTAGE8;nc|ENSG00000288784|Q8IX94|CTAGE4;ENSG00000271079|ENST00000420911|CTAGE15;ENST00000556148.5_3_14:39736663-39748542:+|nuORF;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;ENSG00000271321|ENST00000470691|CTAGE6;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2	nc|ENSG00000289604|P0CG41|CTAGE8	nc|ENSG00000289604|P0CG41|CTAGE8	MULTI-MSMS	HCT116MG_D190212_S3	3	521.8037109375	2	521.803823	1041.59309	0.41567	0.0002169	-0.22627	-0.00011807	0.1894	9.8827E-05	521.8036334557122	25.544	0.3119	25.438	25.256	25.568	-0.10618					12	5	3	0	0	0	0.047849	2	9128	9099;9128		75.761	31.587	1	26955000			8319	6661	4655	4690	8048;8049	8049					0.073959500831279
EELRRVVAA	9	Unmodified	_EELRRVVAA_					0	0	0		nc|ENSG00000289604|P0CG41|CTAGE8;nc|ENSG00000288784|Q8IX94|CTAGE4;ENSG00000271079|ENST00000420911|CTAGE15;ENST00000556148.5_3_14:39736663-39748542:+|nuORF;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;ENSG00000271321|ENST00000470691|CTAGE6;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2	nc|ENSG00000289604|P0CG41|CTAGE8	nc|ENSG00000289604|P0CG41|CTAGE8	MULTI-MSMS	HCT116MG_D190212_S4	4	521.8038330078125	2	521.803823	1041.59309	0.39392	0.00020555	-0.15324	-7.9959E-05	0.24068	0.00012559	521.8037131953799	25.786	0.26022	25.496	25.36	25.62	-0.29023					10	4	3	0	0	0	0.16306	1	9158	9158		45.7	9.5726	1	12591000			8320	6661	4655	4690	8050	8050					0.073959500831279
EELRSRLV	8	Unmodified	_EELRSRLV_					0	0	0			REV__PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	REV__PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2908935546875	2	501.290548	1000.56654	0.43646	0.00021879	0.048882	2.4504E-05	0.48534	0.0002433	501.29048379636833	28.074	0.36271	27.744	27.563	27.926	-0.32987					14	6	3	0	0	0	0.033255	1	10227	10227		142.08	0	1	79908000	+		8321	13596	4656	4691	8051	8051					0.06628261191804086
EELRSRLV	8	Unmodified	_EELRSRLV_					0	0	0			REV__PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	REV__PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	501.2908020019531	2	501.290548	1000.56654	0.49056	0.00024591	-0.052157	-2.6146E-05	0.4384	0.00021977	501.2904441188544	27.887	0.31178	27.699	27.517	27.829	-0.18847					12	5	3	0	0	0	0.17427	1	10070	10070		78.728	0	1	23362000	+		8322	13596	4656	4691	8052	8052					0.06628261191804086
EELRSRLV	8	Unmodified	_EELRSRLV_					0	0	0			REV__PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	REV__PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	501.2907409667969	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.162	1	27.83	27.33	28.33	-0.33138								0	0	0	0.21862	1	10115	10115		65.235	0	1		+		8323	13596	4656	4691	8053	8053					0.06628261191804086
EELRVAGI	8	Unmodified	_EELRVAGI_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000440687.1_1_20:44728270-44728609:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MSMS	HCT116MG_D190212_S2	2	443.7532653808594	2	443.753267	885.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.102	1	41.033	40.533	41.533	-0.068199								0	0	0	0.051955	1	15519	15519		92.491	35.02	1				8324	4928	4657	4692	8054	8054					0.04465498380432109
EELRVDHY	8	Unmodified	_EELRVDHY_					0	0	0		DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant;ENSG00000006634|ENST00000265728|DBF4	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	530.7567749023438	2	530.756538	1059.49852	0.32309	0.00017148	-0.33467	-0.00017763	-0.011576	-6.1438E-06	530.756394732874	27.774	0.26035	27.774	27.644	27.904	0					7	4	2	0	0	0	0.068735	1	10119	10119		103.35	57.333	1	9164400			8325	641	4658	4693	8055	8055					-0.028846084588622034
EELRVDHY	8	Unmodified	_EELRVDHY_					0	0	0		DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant;ENSG00000006634|ENST00000265728|DBF4	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.7562255859375	2	530.756538	1059.49852	0.45749	0.00024282	-0.082199	-4.3628E-05	0.37529	0.00019919	530.7563609628199	28.178	0.20716	27.848	27.719	27.926	-0.32987					8	3	3	0	0	0	0.012121	1	10279	10279		160.52	100.13	1	66691000			8326	641	4658	4693	8056	8056					-0.028846084588622034
EELRVDHY	8	Unmodified	_EELRVDHY_					0	0	0		DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant;ENSG00000006634|ENST00000265728|DBF4	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	354.1733093261719	3	354.173451	1059.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.244	1	27.914	27.414	28.414	-0.32987								0	0	0	0.33717	1	10294	10294		43.772	23.319	1				8327	641	4658	4693	8057	8057					-0.028846084588622034
EELRVDHY	8	Unmodified	_EELRVDHY_					0	0	0		DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant;ENSG00000006634|ENST00000265728|DBF4	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	530.7565307617188	2	530.756538	1059.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.156	1	27.95	27.45	28.45	-0.20593								0	0	0	0.001036	1	10177	10177		122.18	71.324	1				8328	641	4658	4693	8058	8058					-0.028846084588622034
EELRVDHY	8	Unmodified	_EELRVDHY_					0	0	0		DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant;ENSG00000006634|ENST00000265728|DBF4	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	530.7570190429688	2	530.756538	1059.49852	0.41229	0.00021883	0.018461	9.7983E-06	0.43076	0.00022863	530.7564652936485	28.317	0.20826	27.986	27.856	28.064	-0.33138					5	3	2	0	0	0	0.26254	1	10187	10187		62.573	26.446	1	3955400			8329	641	4658	4693	8059	8059					-0.028846084588622034
EELSKKKKAV	10	Unmodified	_EELSKKKKAV_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;KIFAP3|p.E347Gfs*10|1|0.14|ENSG00000075945|chr1:170016605-170016606|-/C|frameshift_variant	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	MSMS	HCT116MG_D190212_S3	3	580.3549194335938	2	580.355888	1158.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.597	1	33.306	32.806	33.806	-0.29013								0	0	0	0.93854	1	12336	12336		7.2892	1.0834	1				8330	1327	4659	4694	8060	8060					0.12422232119979526
EELSKKKKAV	10	Unmodified	_EELSKKKKAV_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3;KIFAP3|p.E347Gfs*10|1|0.14|ENSG00000075945|chr1:170016605-170016606|-/C|frameshift_variant	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	MSMS	HCT116MG_D190212_S4	4	580.3536376953125	2	580.355888	1158.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.684	1	33.299	32.799	33.799	-0.38426								0	0	0	0.93854	1	12270	12270		7.2892	2.5332	1				8331	1327	4659	4694	8061	8061					0.12422232119979526
EELSLTLTAL	10	Unmodified	_EELSLTLTAL_					0	0	0		PCDHB9|p.S298Lfs*14|1|0.47|ENSG00000177839|chr5:141188206-141188206|T/-|frameshift_variant;ENSG00000177839|ENST00000316105|PCDHB9	PCDHB9|p.S298Lfs*14|1|0.47|ENSG00000177839|chr5:141188206-141188206|T/-|frameshift_variant	PCDHB9|p.S298Lfs*14|1|0.47|ENSG00000177839|chr5:141188206-141188206|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	545.24560546875	2	545.305529	1088.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.913	1	30.913	30.413	31.413	0								0	0	0	0.69311	1	11355	11355		37.974	11.09	1				8332	5474	4660	4695	8062	8062					0.055751553464688186
EELSNVLAA	9	Unmodified	_EELSNVLAA_					0	0	0		ENSG00000130255|ENST00000347512|RPL36;ENST00000477971.3_1_4:76957905-76958040:-|nuORF;ENST00000306634.3_1_9:111389208-111389427:+|nuORF	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	HCT116MG_D190212_S1	1	945.4889526367188	1	945.488753	944.481476	0.90949	0.00085991	0.10289	9.7283E-05	1.0124	0.0009572	945.4892351356029	45.477	0.31311	45.477	45.347	45.66	0					8	5	2	0	0	0	0.020181	1	17258	17258		96.285	0.17383	1	11427000			8333	3067	4661	4696	8063	8063					0.007014709353256876
EELSNVLAA	9	Unmodified	_EELSNVLAA_					0	0	0		ENSG00000130255|ENST00000347512|RPL36;ENST00000477971.3_1_4:76957905-76958040:-|nuORF;ENST00000306634.3_1_9:111389208-111389427:+|nuORF	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	HCT116MG_D190212_S2	2	945.4879760742188	1	945.488753	944.481476	0.62378	0.00058978	-0.53117	-0.00050221	0.092616	8.7568E-05	945.4882785914917	45.567	0.25708	45.475	45.307	45.565	-0.092476					7	4	2	0	0	0	0.0090481	1	17344	17344		115.69	23.201	1	39595000			8334	3067	4661	4696	8064	8064					0.007014709353256876
EELSNVLAA	9	Unmodified	_EELSNVLAA_					0	0	0		ENSG00000130255|ENST00000347512|RPL36;ENST00000477971.3_1_4:76957905-76958040:-|nuORF;ENST00000306634.3_1_9:111389208-111389427:+|nuORF	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	HCT116MG_D190212_S3	3	945.4907836914062	1	945.488753	944.481476	0.80698	0.00076299	-0.13903	-0.00013145	0.66795	0.00063154	945.4885375015382	45.797	0.36361	45.486	45.253	45.616	-0.31094					15	6	3	0	0	0	0.0090481	1	17145	17145		115.69	23.201	1	39769000			8335	3067	4661	4696	8065	8065					0.007014709353256876
EELSNVLAA	9	Unmodified	_EELSNVLAA_					0	0	0		ENSG00000130255|ENST00000347512|RPL36;ENST00000477971.3_1_4:76957905-76958040:-|nuORF;ENST00000306634.3_1_9:111389208-111389427:+|nuORF	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2481384277344	2	473.248015	944.481476	0.33443	0.00015827	-0.093807	-4.4394E-05	0.24062	0.00011387	473.2478592023732	45.797	0.25965	45.486	45.305	45.564	-0.31094					8	4	2	0	0	0	0.016134	1	17160	17160		100.37	33.336	1	9811700			8336	3067	4661	4696	8066	8066					0.007014709353256876
EELSNVLAA	9	Unmodified	_EELSNVLAA_					0	0	0		ENSG00000130255|ENST00000347512|RPL36;ENST00000477971.3_1_4:76957905-76958040:-|nuORF;ENST00000306634.3_1_9:111389208-111389427:+|nuORF	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	HCT116MG_D190212_S4	4	945.4894409179688	1	945.488753	944.481476	0.64696	0.00061169	0.22503	0.00021276	0.87199	0.00082445	945.4888092698445	45.848	0.3079	45.476	45.295	45.603	-0.37206					12	5	3	0	0	0	0.0060607	1	16912	16912		128.37	24.617	1	23352000			8337	3067	4661	4696	8067	8067					0.007014709353256876
EELSNVLAA	9	Unmodified	_EELSNVLAA_					0	0	0		ENSG00000130255|ENST00000347512|RPL36;ENST00000477971.3_1_4:76957905-76958040:-|nuORF;ENST00000306634.3_1_9:111389208-111389427:+|nuORF	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2483215332031	2	473.248015	944.481476	0.39251	0.00018575	0.22386	0.00010594	0.61637	0.0002917	473.2480506888727	45.848	0.25854	45.476	45.295	45.553	-0.37206					7	4	2	0	0	0	0.063511	1	16933	16933		68.081	30.107	1	6440900			8338	3067	4661	4696	8068	8068					0.007014709353256876
EELTLSWTAP	10	Unmodified	_EELTLSWTAP_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MSMS	HCT116MG_D190212_S4	4	573.7861328125	2	573.787504	1145.56045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.708	1	31.335	30.835	31.835	-0.37304								0	0	0	0.86471	1	11519	11519		20.454	3.011	1				8339	3522	4662	4697	8069	8069					-0.006503018303874342
EELTRVYED	9	Unmodified	_EELTRVYED_					0	0	0			REV__nc|ENSG00000144747|P82094-2|TMF1	REV__nc|ENSG00000144747|P82094-2|TMF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	576.78515625	2	577.272218	1152.52988	0.29711	0.00017151	-1.5569	-0.00089877	-1.2598	-0.00072726	577.2712723633043	15.841	0.20874	15.507	15.428	15.637	-0.33451					5	3	2	0	0	0	0.25874	1	5338	5338		11.64	0	1	3518100	+		8340	12430	4663	4698	8070	8070					-0.04028080215448426
EELTVTATP	9	Unmodified	_EELTVTATP_					0	0	0		ENST00000579383.5_1_7:45023639-45025664:-|nuORF;ENST00000578968.5_1_7:45024010-45025664:-|nuORF;ENST00000577700.5_1_7:45025577-45025664:-|nuORF	ENST00000579383.5_1_7:45023639-45025664:-|nuORF	ENST00000579383.5_1_7:45023639-45025664:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	960.489013671875	1	960.488418	959.481142	0.70649	0.00067857	-0.16	-0.00015368	0.54649	0.0005249	960.4882007572775	36.36	0.26792	36.36	36.202	36.47	0					6	4	2	0	0	0	0.031005	1	13571	13571		85.357	18.013	1	6464600			8341	8934	4664	4699	8071	8071					-0.00021948784524283838
EELYSKVTP	9	Unmodified	_EELYSKVTP_					0	0	0		ENST00000525711.1_1_11:122526757-122598246:+|nuORF;UBASH3B|p.R25Gfs*76|1|0.28|ENSG00000154127|chr11:122656117-122656117|C/-|frameshift_variant;ENSG00000154127|ENST00000284273|UBASH3B	ENST00000525711.1_1_11:122526757-122598246:+|nuORF	ENST00000525711.1_1_11:122526757-122598246:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	533.276611328125	2	533.276772	1064.53899	0.4855	0.0002589	0.029509	1.5736E-05	0.51501	0.00027464	533.2766367723024	33.775	0.51884	33.485	33.148	33.667	-0.29013					14	9	2	0	0	0	0.066823	1	12418	12418		66.457	32.354	1	4409900			8342	4207	4665	4700	8072	8072					0.009303131409069465
EEMDLFTKY	9	Unmodified	_EEMDLFTKY_					0	0	0		ENSG00000092020|ENST00000261475|PPP2R3C;ENST00000556254.1_1_14:35579616-35591165:-|nuORF;ENST00000557773.5_1_14:35568434-35591165:-|nuORF	ENSG00000092020|ENST00000261475|PPP2R3C	ENSG00000092020|ENST00000261475|PPP2R3C	MSMS	HCT116MG_D190212_S1	1	588.2682495117188	2	588.26809	1174.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.541	1	49.541	49.041	50.041	0								0	0	0	0.64932	1	18880	18880		21.537	11.463	1				8343	1571	4666	4701	8073	8073					-0.05865350456383567
EEMEAEYEYEM	11	Unmodified	_EEMEAEYEYEM_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MSMS	HCT116MG_D190212_S4	4	726.7623291015625	2	726.762708	1451.51086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.691	1	48.323	47.823	48.823	-0.36728								0	0	0	0.96149	1	18039	18039		0.30703	0	1		+		8344	11659	4667	4702	8074	8074					-0.19683165683659354
EEMEAYRM	8	Unmodified	_EEMEAYRM_					0	0	0		ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.2750244140625	2	529.71771	1057.42087	0.51074	0.00027055	0.24097	0.00012765	0.75172	0.0003982	529.7178453196703	34.273	0.20799	34.097	33.967	34.175	-0.17512					5	3	2	0	0	0	0.29044	1	12749	12749		25.399	2.2509	1	16193000			8345	4708	4668	4703	8075	8075					-0.10554705710910639
EEMEAYRM	8	Unmodified	_EEMEAYRM_					0	0	0		ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MULTI-MSMS	HCT116MG_D190212_S3	3	529.7178344726562	2	529.71771	1057.42087	0.32967	0.00017463	-0.20137	-0.00010667	0.1283	6.7963E-05	529.717547519315	34.504	0.25936	34.207	34.077	34.336	-0.29707					8	4	2	0	0	0	0.46892	1	12726	12726		43.858	7.8141	1	12955000			8346	4708	4668	4703	8076	8076					-0.10554705710910639
EEMEWFNNY	9	Oxidation (M)	_EEM(Oxidation (M))EWFNNY_		EEM(1)EWFNNY		EEM(96)EWFNNY	0	0	1		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-MSMS	HCT116MG_D190212_S3	3	639.2413940429688	2	639.242603	1276.47065	0.4369	0.00027929	-0.37381	-0.00023896	0.063089	4.0329E-05	639.2423052819943	50.03	0.31228	49.714	49.602	49.914	-0.31525					9	5	2	0	0	0	0.020181	1	18865	18865		96.285	77.028	1	14464000			8347	1749	4669	4704	8077	8077		32			-0.1565229950124376
EEMEWFNNY	9	Oxidation (M)	_EEM(Oxidation (M))EWFNNY_		EEM(1)EWFNNY		EEM(110)EWFNNY	0	0	1		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-MSMS	HCT116MG_D190212_S4	4	639.2427978515625	2	639.242603	1276.47065	0.34507	0.00022058	-0.13037	-8.3339E-05	0.2147	0.00013724	639.24237198549	50.109	0.34592	49.75	49.551	49.897	-0.35878					14	6	3	0	0	0	0.012168	1	18599	18599		108	92.749	1	19128000			8348	1749	4669	4704	8078	8078		32			-0.1565229950124376
EEMEWFNNY	9	Unmodified	_EEMEWFNNY_					0	0	0		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-MSMS	HCT116MG_D190212_S3	3	631.746826171875	2	631.245146	1260.47574	0.49918	0.00031511	0.22203	0.00014015	0.72121	0.00045526	631.2451854034441	55.349	0.369	55.057	54.874	55.243	-0.2918					13	6	3	0	0	0	0.0035556	1	21004	21004		172.91	152.45	1	29423000			8349	1749	4669	4705	8079	8079					-0.1440799563863493
EEMEWFNNY	9	Unmodified	_EEMEWFNNY_					0	0	0		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-MSMS	HCT116MG_D190212_S4	4	631.2460327148438	2	631.245146	1260.47574	0.50055	0.00031597	0.2422	0.00015289	0.74276	0.00046886	631.2456619614113	55.376	0.15644	55.058	54.928	55.084	-0.31774					4	2	2	0	0	0	0.023611	1	20741	20741		92.822	77.984	1	6611000			8350	1749	4669	4705	8080	8080					-0.1440799563863493
EEMEWFNNY	9	Unmodified	_EEMEWFNNY_					0	0	0		ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	ENSG00000101003|ENST00000262460|GINS1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	631.245146	1260.47574	0.78247	0.00049393	0.85582	0.00054023	1.6383	0.0010342	631.7472399609846	55.019	0.15254	55.019	54.943	55.095	0	-0.025821	0.00077163	NaN	172.91	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12162000			8351	1749	4669	4705							-0.1440799563863493
EEMGVPVAA	9	Unmodified	_EEMGVPVAA_					0	0	0		HAUS5|p.R25Q|1|0.09|ENSG00000249115|chr19:35612868-35612868|G/A|missense_variant;ENST00000588570.5_1_19:36103696-36104695:+|nuORF;ENST00000428854.5_1_19:36103723-36104803:+|nuORF;nc|ENSG00000249115|O94927-2|HAUS5;ENST00000585968.5_1_19:36103696-36110661:+|nuORF;ENSG00000249115|ENST00000203166|HAUS5	HAUS5|p.R25Q|1|0.09|ENSG00000249115|chr19:35612868-35612868|G/A|missense_variant	HAUS5|p.R25Q|1|0.09|ENSG00000249115|chr19:35612868-35612868|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	902.4281005859375	1	902.428795	901.421518	0.69172	0.00062423	-0.57257	-0.00051671	0.11914	0.00010752	902.4281367867908	38.564	0.31183	38.263	38.04	38.352	-0.30137					8	5	2	0	0	0	0.0050053	1	14311	14311		137.59	97.628	1	3325100			8352	6576	4670	4706	8081	8081					-0.033135429995581944
EEMGVPVAA	9	Unmodified	_EEMGVPVAA_					0	0	0		HAUS5|p.R25Q|1|0.09|ENSG00000249115|chr19:35612868-35612868|G/A|missense_variant;ENST00000588570.5_1_19:36103696-36104695:+|nuORF;ENST00000428854.5_1_19:36103723-36104803:+|nuORF;nc|ENSG00000249115|O94927-2|HAUS5;ENST00000585968.5_1_19:36103696-36110661:+|nuORF;ENSG00000249115|ENST00000203166|HAUS5	HAUS5|p.R25Q|1|0.09|ENSG00000249115|chr19:35612868-35612868|G/A|missense_variant	HAUS5|p.R25Q|1|0.09|ENSG00000249115|chr19:35612868-35612868|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		1	902.428795	901.421518	0.55972	0.00050511	-0.49914	-0.00045043	0.060583	5.4672E-05	902.4280418722088	38.639	0.1873	38.258	38.096	38.284	-0.38163	-0.0025908	3.8509E-05	NaN	137.59	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2481600			8353	6576	4670	4706							-0.033135429995581944
EEMHIKAI	8	Unmodified	_EEMHIKAI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MSMS	HCT116MG_D190212_S2	2	485.7552490234375	2	485.754953	969.495352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.911	1	32.7	32.2	33.2	-0.21135								0	0	0	0.090641	1	12194	12194		85.357	53.24	1				8354	1124	4671	4707	8082	8082					0.009384251627921003
EEMHQVAIA	9	Unmodified	_EEMHQVAIA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	HCT116MG_D190212_S3	3	514.2474365234375	2	514.247492	1026.48043	0.10958	5.6353E-05	-0.47859	-0.00024611	-0.369	-0.00018976	514.2472979602508	31.047	0.36531	30.787	30.604	30.97	-0.26071					10	6	3	0	0	0	0.49914	1	11331	11331		16.942	5.302	1	9406700			8355	2885	4672	4708	8083	8083					-0.03175066705193785
EEMHQVAIA	9	Unmodified	_EEMHQVAIA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MATCH	HCT116MG_D190212_S2	2		2	514.247492	1026.48043	0.16178	8.3194E-05	0.23633	0.00012153	0.39811	0.00020472	514.2475628586435	30.991	0.20768	30.724	30.56	30.768	-0.26704	-0.065425	0.00029477	NaN	16.942	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10705000			8356	2885	4672	4708							-0.03175066705193785
EEMHQVAIA	9	Unmodified	_EEMHQVAIA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	514.247492	1026.48043	0.17984	9.2483E-05	0.82973	0.00042669	1.0096	0.00051917	514.2478777144626	31.229	0.36096	30.858	30.559	30.919	-0.37026	0.068504	0.00090509	NaN	16.942	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2577500			8357	2885	4672	4708							-0.03175066705193785
EEMHQVAIAA	10	Unmodified	_EEMHQVAIAA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	HCT116MG_D190212_S3	3	549.76611328125	2	549.766049	1097.51754	0.28339	0.0001558	0.68906	0.00037882	0.97245	0.00053462	549.7662848335309	32.25	0.2081	31.971	31.838	32.046	-0.27841					8	3	3	0	0	0	0.057153	1	11815	11815		82.529	53.448	1	19827000			8358	2885	4673	4709	8084	8084					-0.027313951594351238
EEMHQVAIAA	10	Unmodified	_EEMHQVAIAA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	HCT116MG_D190212_S4	4	549.766845703125	2	549.766049	1097.51754	0.48724	0.00026787	0.26841	0.00014756	0.75565	0.00041543	549.7660295754754	32.406	0.20752	32.027	31.897	32.105	-0.37924					6	3	2	0	0	0	0.40349	1	11810	11810		41.956	17.935	1	7957100			8359	2885	4673	4709	8085	8085					-0.027313951594351238
EEMKFHEF	8	Unmodified	_EEMKFHEF_					0	0	0		ENST00000478787.1_1_10:102296230-102304880:+|nuORF;ENSG00000166135|ENST00000299163|HIF1AN	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	549.243408203125	2	548.742042	1095.46953	0.82711	0.00045387	-0.24527	-0.00013459	0.58185	0.00031928	549.2434917111514	37.607	0.20866	37.607	37.499	37.707	0					5	3	2	0	0	0	0.40176	1	14082	14082		49.933	21.446	1	6278100			8360	4821	4674	4710	8086	8086					-0.07438469079488641
EEMKFHEF	8	Unmodified	_EEMKFHEF_					0	0	0		ENST00000478787.1_1_10:102296230-102304880:+|nuORF;ENSG00000166135|ENST00000299163|HIF1AN	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	548.7417602539062	2	548.742042	1095.46953	0.21768	0.00011945	-0.019864	-1.09E-05	0.19781	0.00010855	548.7417985195876	37.66	0.30659	37.557	37.385	37.692	-0.10318					14	5	4	0	0	0	0.012121	1	14128	14128		160.52	75.159	1	97192000			8361	4821	4674	4710	8087	8087					-0.07438469079488641
EEMKFHEF	8	Unmodified	_EEMKFHEF_					0	0	0		ENST00000478787.1_1_10:102296230-102304880:+|nuORF;ENSG00000166135|ENST00000299163|HIF1AN	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	366.1636962890625	3	366.163787	1095.46953	-0.41077	-0.00015041	-0.19958	-7.308E-05	-0.61035	-0.00022349	366.1637154107354	37.648	0.25659	37.545	37.435	37.692	-0.10318					6	4	2	0	0	0	0.74206	1	14158	14158		13.906	0	1	20195000			8362	4821	4674	4710	8088	8088					-0.07438469079488641
EEMKFHEF	8	Unmodified	_EEMKFHEF_					0	0	0		ENST00000478787.1_1_10:102296230-102304880:+|nuORF;ENSG00000166135|ENST00000299163|HIF1AN	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	548.7415771484375	2	548.742042	1095.46953	0.52607	0.00028868	-0.1928	-0.0001058	0.33328	0.00018288	548.7418679099964	37.844	0.19487	37.543	37.465	37.66	-0.30137					24	14	2	0	0	0	0.15825	1	14036	14036		81.89	39.796	1	32812000			8363	4821	4674	4710	8089	8089					-0.07438469079488641
EEMKFHEF	8	Unmodified	_EEMKFHEF_					0	0	0		ENST00000478787.1_1_10:102296230-102304880:+|nuORF;ENSG00000166135|ENST00000299163|HIF1AN	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	548.74169921875	2	548.742042	1095.46953	0.33832	0.00018565	-0.33176	-0.00018205	0.0065538	3.5963E-06	548.7417103109894	38.001	0.16876	37.618	37.542	37.711	-0.38283					13	8	2	0	0	0	0.058063	1	13914	13914		114.65	43.515	1	7205400			8364	4821	4674	4710	8090	8090					-0.07438469079488641
EEMKFHEF	8	Oxidation (M)	_EEM(Oxidation (M))KFHEF_		EEM(1)KFHEF		EEM(44)KFHEF	0	0	1		ENST00000478787.1_1_10:102296230-102304880:+|nuORF;ENSG00000166135|ENST00000299163|HIF1AN	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	ENST00000478787.1_1_10:102296230-102304880:+|nuORF	MSMS	HCT116MG_D190212_S4	4	556.7393188476562	2	556.739499	1111.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.335	1	30.965	30.465	31.465	-0.37026								0	0	0	0.48722	1	11368	11368		43.858	16.975	1				8365	4821	4674	4711	8091	8091		105			-0.0868277294212021
EEMKGIAA	8	Unmodified	_EEMKGIAA_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	424.7127380371094	2	424.712753	847.410954	-0.03368	-1.4304E-05	0.034698	1.4737E-05	0.0010174	4.3211E-07	424.7126946585906	26.944	0.31216	26.944	26.761	27.073	0					9	5	2	0	0	0	0.30543	1	9759	9759		58.679	18.721	1	21073000			8366	194	4675	4712	8092	8092					-0.018855256539723086
EEMKGIAA	8	Unmodified	_EEMKGIAA_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	424.71295166015625	2	424.712753	847.410954	0.35879	0.00015238	0.072623	3.0844E-05	0.43141	0.00018323	424.71267323168814	27.353	0.36176	27	26.818	27.18	-0.35254					14	6	3	0	0	0	0.30543	1	9935	9935		58.679	18.721	1	92371000			8367	194	4675	4712	8093	8093					-0.018855256539723086
EEMKGIAA	8	Unmodified	_EEMKGIAA_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	848.4193725585938	1	848.41823	847.410954	1.012	0.00085858	0.091114	7.7303E-05	1.1031	0.00093588	848.4182870383069	27.367	0.31007	27.018	26.821	27.131	-0.34961					8	5	2	0	0	0	0.17427	1	9940	9940		78.728	32.707	1	28221000			8368	194	4675	4712	8094	8094					-0.018855256539723086
EEMKGIAA	8	Unmodified	_EEMKGIAA_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	424.7127380371094	2	424.712753	847.410954	0.13381	5.6829E-05	0.075224	3.1948E-05	0.20903	8.8778E-05	424.7127120830915	27.174	0.41657	27.005	26.859	27.276	-0.16933					12	7	2	0	0	0	0.30543	1	9780	9780		58.679	18.721	1	27580000			8369	194	4675	4712	8095	8095					-0.018855256539723086
EEMKGIAA	8	Unmodified	_EEMKGIAA_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	848.4192504882812	1	848.41823	847.410954	0.74229	0.00062978	-0.18219	-0.00015457	0.5601	0.0004752	848.418193317264	27.159	0.26034	26.99	26.859	27.12	-0.16933					7	4	2	0	0	0	0.17427	1	9800	9800		78.728	23.954	1	6569000			8370	194	4675	4712	8096	8096					-0.018855256539723086
EEMKGIAA	8	Unmodified	_EEMKGIAA_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	424.7127685546875	2	424.712753	847.410954	0.25649	0.00010893	-0.22483	-9.549E-05	0.031653	1.3444E-05	424.7126196287108	27.379	0.2596	27.068	26.95	27.21	-0.3114					7	4	2	0	0	0	0.44484	1	9811	9811		46.021	17.534	1	4890300			8371	194	4675	4712	8097	8097					-0.018855256539723086
EEMKGIAA	8	Unmodified	_EEMKGIAA_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		1	848.41823	847.410954	0.73752	0.00062573	-0.0051496	-4.3691E-06	0.73237	0.00062136	848.4181192062379	26.944	0.20822	26.944	26.813	27.022	0	-0.039995	-2.3685E-05	NaN	78.728	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5248100			8372	194	4675	4712							-0.018855256539723086
EEMKGIAAV	9	Unmodified	_EEMKGIAAV_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	947.4879150390625	1	947.486644	946.479368	0.71935	0.00068158	0.41278	0.00039111	1.1321	0.0010727	947.4873637244859	35.081	0.363	34.923	34.657	35.02	-0.15834					9	6	2	0	0	0	0.053544	1	13068	13068		72.968	3.6297	1	33447000			8373	194	4676	4713	8098	8098					0.003987189258850776
EEMKGIAAV	9	Unmodified	_EEMKGIAAV_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	474.2469482421875	2	474.24696	946.479368	0.43618	0.00020686	0.7032	0.00033349	1.1394	0.00054035	474.2472344968674	35.281	0.3697	34.982	34.75	35.12	-0.29922					18	7	4	0	0	0	0.047849	1	12997	12997		75.761	6.6559	1	146360000			8374	194	4676	4713	8099	8099					0.003987189258850776
EEMKGIAAV	9	Unmodified	_EEMKGIAAV_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	947.4866943359375	1	947.486644	946.479368	0.94953	0.00089966	-0.46465	-0.00044025	0.48487	0.00045941	947.4862262236849	35.277	0.25962	34.978	34.801	35.061	-0.29922					10	4	3	0	0	0	0.045679	1	13020	13020		76.825	1.8958	1	11947000			8375	194	4676	4713	8100	8100					0.003987189258850776
EEMKGIAAV	9	Unmodified	_EEMKGIAAV_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		1	947.486644	946.479368	0.67258	0.00063726	-0.47934	-0.00045417	0.19324	0.00018309	947.4865739580365	35.369	0.15312	34.983	34.853	35.006	-0.38606	0.021587	-0.00027098	NaN	76.825	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5926300			8376	194	4676	4713							0.003987189258850776
EEMKGIAAV	9	Oxidation (M)	_EEM(Oxidation (M))KGIAAV_		EEM(1)KGIAAV		EEM(100)KGIAAV	0	0	1		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	482.2446594238281	2	482.244418	962.474282	0.30651	0.00014781	0.29031	0.00014	0.59682	0.00028781	482.2443999888494	27.783	0.41591	27.595	27.465	27.881	-0.18847					13	7	3	0	0	0	0.016701	1	10050	10050		99.799	45.025	1	13322000			8377	194	4676	4714	8101	8101		1			-0.008455849367237533
EEMKGIAAV	9	Oxidation (M)	_EEM(Oxidation (M))KGIAAV_		EEM(1)KGIAAV		EEM(100)KGIAAV	0	0	1		ENST00000523744.2_2_8:17924585-17924894:-|nuORF;ASAH1|p.Y137Mfs*10|1|0.37|ENSG00000104763|chr8:18064505-18064505|A/-|frameshift_variant;ASAH1|p.W314Cfs*28|1|0.11|ENSG00000104763|chr8:18059440-18059440|C/-|frameshift_variant;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MSMS	HCT116MG_D190212_S4	4	482.24444580078125	2	482.244418	962.474282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.062	1	27.731	27.231	28.231	-0.33138								0	0	0	0.012293	1	10074	10074		103.35	44.675	1				8378	194	4676	4714	8102	8102		1			-0.008455849367237533
EEMKKIRQV	9	Unmodified	_EEMKKIRQV_					0	0	0		ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	387.55352783203125	3	387.553386	1159.63833	-0.14076	-5.4551E-05	0.11259	4.3633E-05	-0.028171	-1.0918E-05	387.55340444232337	19.887	0.26145	19.887	19.809	20.07	0					7	4	2	0	0	0	0.30117	1	6952	6952		34.932	19.684	1	3116600			8379	500	4677	4715	8103	8103					0.0648943255400809
EEMKKIRQV	9	Unmodified	_EEMKKIRQV_					0	0	0		ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	MSMS	HCT116MG_D190212_S1	1	580.8269653320312	2	580.82644	1159.63833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.98	1	19.98	19.48	20.48	0								0	0	0	0.67173	1	6959	6959		20.454	12.543	1				8380	500	4677	4715	8104	8104					0.0648943255400809
EEMKKIRQV	9	Unmodified	_EEMKKIRQV_					0	0	0		ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	580.8265991210938	2	580.82644	1159.63833	0.46438	0.00026972	-0.13473	-7.8253E-05	0.32965	0.00019147	580.8263196243962	20.642	0.26388	20.262	20.13	20.394	-0.37949					9	4	3	0	0	0	0.0040527	1	7246	7246		149.91	109.96	1	52924000			8381	500	4677	4715	8105	8105					0.0648943255400809
EEMKKIRQV	9	Unmodified	_EEMKKIRQV_					0	0	0		ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	387.55328369140625	3	387.553386	1159.63833	-0.086233	-3.342E-05	0.15706	6.087E-05	0.070829	2.745E-05	387.55333125124326	19.554	0.26045	19.614	19.49	19.75	0.05983					12	4	4	0	0	0	0.023938	1	6715	6715		74.2	44.762	1	21035000			8382	500	4677	4715	8106	8106					0.0648943255400809
EEMKKIRQV	9	Unmodified	_EEMKKIRQV_					0	0	0		ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	580.8265380859375	2	580.82644	1159.63833	0.41865	0.00024317	-0.22456	-0.00013043	0.1941	0.00011274	580.826376193587	19.56	0.26051	19.62	19.438	19.698	0.05983					10	4	3	0	0	0	0.0040527	1	6717	6717		149.91	113.41	1	16999000			8383	500	4677	4715	8107	8107					0.0648943255400809
EEMKKIRQV	9	Unmodified	_EEMKKIRQV_					0	0	0		ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	580.8259887695312	2	580.82644	1159.63833	0.22427	0.00013026	0.12057	7.0032E-05	0.34484	0.00020029	580.8264018453004	20.008	0.25996	19.814	19.684	19.944	-0.19367					9	4	3	0	0	0	0.0040527	1	6829	6829		149.91	113.41	1	8692100			8384	500	4677	4715	8108	8108					0.0648943255400809
EEMKKIRQV	9	Unmodified	_EEMKKIRQV_					0	0	0		ENST00000518885.1_1_8:17102047-17102691:-|nuORF;ENST00000523649.1_1_8:17102523-17102691:-|nuORF;CNOT7|p.K125Nfs*17|1|0.48|ENSG00000198791|chr8:17237310-17237310|T/-|frameshift_variant;CNOT7|p.P190Sfs*5|1|0.16|ENSG00000198791|chr8:17234766-17234767|-/A|frameshift_variant;nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	ENST00000518885.1_1_8:17102047-17102691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	387.5531005859375	3	387.553386	1159.63833	0.064086	2.4837E-05	-0.20915	-8.1055E-05	-0.14506	-5.6218E-05	387.5532624050536	20.008	0.25996	19.814	19.684	19.944	-0.19367					8	4	2	0	0	0	0.010834	1	6831	6831		100.09	63.016	1	8271100			8385	500	4677	4715	8109	8109					0.0648943255400809
EEMKKNNIP	9	Unmodified	_EEMKKNNIP_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S1	1	551.7817993164062	2	551.781699	1101.54884	0.57702	0.00031839	0.008034	4.433E-06	0.58505	0.00032282	551.7816627828371	21.041	0.53291	21.041	20.904	21.437	0					14	9	2	0	0	0	0.051033	1	7396	7396		81.89	27.117	1	5335700			8386	9390	4678	4716	8110	8110					0.0021317787463885907
EEMKKNNIP	9	Unmodified	_EEMKKNNIP_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S2	2	551.7815551757812	2	551.781699	1101.54884	0.32928	0.00018169	0.21559	0.00011896	0.54487	0.00030065	551.7817297581144	21.635	1.6632	21.25	21.115	22.778	-0.38503					65	31	3	0	0	0	0.029121	3	7632	7632;7856;8030		107.19	69.011	1	53734000			8387	9390	4678	4716	8111;8112;8113	8111					0.0021317787463885907
EEMKKNNIP	9	Unmodified	_EEMKKNNIP_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S3	3	551.781982421875	2	551.781699	1101.54884	0.30028	0.00016569	0.22798	0.0001258	0.52826	0.00029149	551.7818011638168	20.81	1.6215	20.845	20.662	22.284	0.034473					69	30	3	0	0	0	0.029121	2	7219	7219;7450		107.19	65.092	1	40318000			8388	9390	4678	4716	8114;8115	8114					0.0021317787463885907
EEMKKNNIP	9	Unmodified	_EEMKKNNIP_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S3	3	368.19012451171875	3	368.190225	1101.54884	-0.20837	-7.672E-05	-0.16062	-5.9139E-05	-0.36899	-0.00013586	368.19024957921965	20.816	1.3092	20.851	20.662	21.972	0.034473					45	24	4	0	0	0	0.52876	1	7222	7222		15.248	0.8431	1	10633000			8389	9390	4678	4716	8116	8116					0.0021317787463885907
EEMKKNNIP	9	Unmodified	_EEMKKNNIP_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S4	4	551.7820434570312	2	551.781699	1101.54884	0.53402	0.00029466	0.053426	2.948E-05	0.58744	0.00032414	551.7816514727604	21.203	1.0906	20.993	20.811	21.902	-0.20959					46	20	3	0	0	0	0.060947	1	7307	7307		85.642	30.868	1	19009000			8390	9390	4678	4716	8117	8117					0.0021317787463885907
EEMKKNNIP	9	Unmodified	_EEMKKNNIP_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S4	4	368.19036865234375	3	368.190225	1101.54884	0.024504	9.022E-06	-0.16189	-5.9605E-05	-0.13738	-5.0583E-05	368.19020833925094	21.203	1.0905	20.993	20.863	21.954	-0.20959					28	20	2	0	0	0	0.43843	1	7308	7308		20.415	1.0526	1	3318400			8391	9390	4678	4716	8118	8118					0.0021317787463885907
EEMKKQIEA	9	Unmodified	_EEMKKQIEA_					0	0	0		ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;ATP7A|p.P403Afs*13|1|0.09|ENSG00000165240|chrX:77989821-77989822|-/A|frameshift_variant;ATP7A|p.C661Lfs*24|1|0.09|ENSG00000165240|chrX:78011476-78011477|-/T|frameshift_variant	ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant	ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2816162109375	2	553.281531	1104.54851	0.39091	0.00021629	-0.33495	-0.00018532	0.055962	3.0963E-05	553.2814279557142	19.629	0.3125	19.688	19.49	19.802	0.05983					9	5	2	0	0	0	0.043159	1	6762	6762		78.06	32.361	1	5586200			8392	229	4679	4717	8119	8119					0.0004175815481630707
EEMKNQIIA	9	Unmodified	_EEMKNQIIA_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.2765502929688	2	538.276249	1074.53795	0.653	0.00035149	-0.25674	-0.0001382	0.39626	0.0002133	538.2760055146125	31.887	0.20605	31.639	31.51	31.716	-0.24883					5	3	2	0	0	0	0.14171	1	11803	11803		49.933	13.806	1	18190000			8393	4914	4680	4718	8120	8120					0.0036577550038146
EEMKNQIIA	9	Unmodified	_EEMKNQIIA_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.276123046875	2	538.276249	1074.53795	0.35641	0.00019185	-0.35891	-0.00019319	-0.0025	-1.3457E-06	538.2760977453079	32.028	0.25984	31.75	31.578	31.838	-0.27841					8	4	2	0	0	0	0.12205	1	11731	11731		53.833	17.706	1	13030000			8394	4914	4680	4718	8121	8121					0.0036577550038146
EEMKNQIIA	9	Unmodified	_EEMKNQIIA_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	HCT116MG_D190212_S4	4	538.2767333984375	2	538.276249	1074.53795	0.32333	0.00017404	0.49929	0.00026876	0.82262	0.0004428	538.2763598445043	32.147	0.25954	31.771	31.642	31.901	-0.37529					7	4	2	0	0	0	0.14171	1	11723	11723		49.933	19.296	1	6463100			8395	4914	4680	4718	8122	8122					0.0036577550038146
EEMKRNDLP	9	Unmodified	_EEMKRNDLP_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	HCT116MG_D190212_S3	3	566.2763061523438	2	566.27678	1130.53901	0.51317	0.0002906	-1.3463	-0.00076239	-0.83314	-0.00047179	566.2766874637748	24.902	0.52092	24.818	24.601	25.122	-0.083694					19	9	3	0	0	0	0.10244	1	8908	8908		57.722	15.882	1	2449800			8396	3406	4681	4719	8123	8123					-0.02104010130756251
EEMLDIGEAH	10	Unmodified	_EEMLDIGEAH_					0	0	0			REV__SASH1|p.T1109M|1|0.14|ENSG00000111961|chr6:148544796-148544796|C/T|missense_variant	REV__SASH1|p.T1109M|1|0.14|ENSG00000111961|chr6:148544796-148544796|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	572.2504272460938	2	572.252971	1142.49139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.434	1	37.331	36.831	37.831	-0.10318								0	0	0	0.86471	1	14031	14031		20.454	4.6064	1		+		8397	17492	4682	4720	8124	8124					-0.07415709121573855
EEMLTEDVHL	10	Unmodified	_EEMLTEDVHL_					0	0	0			REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	608.6282958984375	2	608.281728	1214.5489	0.56648	0.00034458	-1.9038	-0.001158	-1.3373	-0.00081345	608.2806744888584	42.838	0.25994	42.534	42.352	42.612	-0.30472					6	4	2	0	0	0	0.31174	1	15899	15899		1.6526	0.17072	1	3177900	+		8398	18012	4683	4721	8125	8125					-0.049788669160079735
EEMMFCDMC	9	Unmodified	_EEMMFCDMC_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MSMS	HCT116MG_D190212_S2	2	569.6737060546875	2	569.672742	1137.33093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.119	1	38.026	37.526	38.526	-0.09301								0	0	0	0.76967	1	14311	14311		2.0598	0.40713	1				8399	3052	4684	4722	8126	8126					-0.23224162697624706
EEMPQVHTP	9	Unmodified	_EEMPQVHTP_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S1	1	534.7469482421875	2	534.244949	1066.47534	0.44624	0.0002384	0.024449	1.3062E-05	0.47069	0.00025147	534.2448570043407	31.683	0.93783	31.683	31.023	31.961	0					23	17	2	0	0	0	0.031089	1	11614	11614		85.272	39.251	1	5100300			8400	9427	4685	4723	8127	8127					-0.05523370567834718
EEMPQVHTP	9	Unmodified	_EEMPQVHTP_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2451782226562	2	534.244949	1066.47534	0.65316	0.00034894	-0.13566	-7.2474E-05	0.5175	0.00027647	534.2447410524136	31.843	1.19	31.594	30.734	31.924	-0.24883					59	22	3	0	0	0	0.0046822	3	11823	11581;11823;11854		140.63	57.537	1	71358000			8401	9427	4685	4723	8128;8129;8130	8129					-0.05523370567834718
EEMPQVHTP	9	Unmodified	_EEMPQVHTP_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2451782226562	2	534.244949	1066.47534	0.38991	0.00020831	0.24003	0.00012823	0.62994	0.00033654	534.2449276756284	31.952	1.2508	31.679	30.748	31.999	-0.27297					65	23	4	0	0	0	0.0067688	2	11686	11463;11686		122.18	56.944	1	42353000			8402	9427	4685	4723	8131;8132	8132					-0.05523370567834718
EEMPQVHTP	9	Unmodified	_EEMPQVHTP_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S4	4	534.2452392578125	2	534.244949	1066.47534	0.34113	0.00018225	0.057837	3.0899E-05	0.39896	0.00021314	534.2449737872408	32.051	1.0904	31.676	30.914	32.005	-0.37529					49	20	3	0	0	0	0.0040527	2	11677	11435;11677		149.91	60.96	1	21147000			8403	9427	4685	4723	8133;8134	8134					-0.05523370567834718
EEMPQVHTP	9	Oxidation (M)	_EEM(Oxidation (M))PQVHTP_		EEM(1)PQVHTP		EEM(92)PQVHTP	0	0	1		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2432861328125	2	542.242406	1082.47026	0.65876	0.00035721	-0.038067	-2.0642E-05	0.62069	0.00033657	542.2424231239975	24.385	0.93737	24.004	23.406	24.344	-0.38003					24	17	2	0	0	0	0.023938	1	8767	8767		92.491	40.223	1	8409600			8404	9427	4685	4724	8135	8135		144			-0.06767674430443549
EEMPQVHTP	9	Oxidation (M)	_EEM(Oxidation (M))PQVHTP_		EEM(1)PQVHTP		EEM(110)PQVHTP	0	0	1		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S3	3	542.2424926757812	2	542.242406	1082.47026	0.37701	0.00020443	0.0015481	8.3943E-07	0.37856	0.00020527	542.2424156521687	24.087	1.25	24.025	23.269	24.519	-0.061449					41	23	2	0	0	0	0.012496	3	8582	8355;8514;8582		107.19	54.919	1	7737200			8405	9427	4685	4724	8136;8137;8138	8138		144			-0.06767674430443549
EEMPQVHTP	9	Oxidation (M)	_EEM(Oxidation (M))PQVHTP_		EEM(1)PQVHTP		EEM(110)PQVHTP	0	0	1		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S4	4	542.2428588867188	2	542.242406	1082.47026	0.59433	0.00032227	0.19381	0.00010509	0.78815	0.00042737	542.2424865764075	24.261	1.4544	24.003	23.053	24.507	-0.25816					45	27	2	0	0	0	0.012496	3	8613	8367;8537;8613		107.19	41.952	1	4349700			8406	9427	4685	4724	8139;8140;8141	8141		144			-0.06767674430443549
EEMPRFYGS	9	Unmodified	_EEMPRFYGS_					0	0	0		BIN3|p.R190C|1|0.19|ENSG00000147439|chr8:22623962-22623962|G/A|missense_variant;nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	BIN3|p.R190C|1|0.19|ENSG00000147439|chr8:22623962-22623962|G/A|missense_variant	BIN3|p.R190C|1|0.19|ENSG00000147439|chr8:22623962-22623962|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	558.2451782226562	2	558.244949	1114.47534	0.35748	0.00019956	-0.10232	-5.7121E-05	0.25516	0.00014244	558.244666960199	39.05	0.25935	38.749	38.613	38.872	-0.30137					9	4	3	0	0	0	0.026272	1	14510	14510		90.135	51.959	1	6063000			8407	266	4686	4725	8142	8142					-0.07731370567830709
EEMQRFMPP	9	Unmodified	_EEMQRFMPP_					0	0	0		nc|ENSG00000170615|P58743-2|SLC26A5;SLC26A5|p.F693Lfs*19|1|0.36|ENSG00000170615|chr7:103374555-103374555|A/-|frameshift_variant;nc|ENSG00000170615|P58743-5|SLC26A5;nc|ENSG00000170615|P58743-6|SLC26A5;ENSG00000170615|ENST00000306312|SLC26A5	nc|ENSG00000170615|P58743-2|SLC26A5	nc|ENSG00000170615|P58743-2|SLC26A5	MSMS	HCT116MG_D190212_S2	2	388.8428649902344	3	388.84406	1163.51035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.352	1	19.972	19.472	20.472	-0.37949								0	0	0	0.76677	1	7109	7109		12.241	5.1389	1				8408	5146	4687	4726	8143	8143					-0.06486451031514662
EEMREKQQAA	10	Unmodified	_EEMREKQQAA_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;GNL3L|p.E98Sfs*12|1|0.06|ENSG00000130119|chrX:54541374-54541374|G/-|frameshift_variant;ENST00000489691.1_1_X:54558969-54570464:+|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	HCT116MG_D190212_S2	2	610.2904663085938	2	610.290419	1218.56629	0.4047	0.00024698	-0.36123	-0.00022046	0.043462	2.6524E-05	610.2903962135598	14.59	0.20877	14.27	14.14	14.349	-0.31952					8	3	3	0	0	0	0.68559	1	4810	4810		21.59	7.9753	1	3681900			8409	3057	4689	4727	8144	8144					-0.03425526590353911
EEMRHIDMV	9	Unmodified	_EEMRHIDMV_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	HCT116MG_D190212_S1	1	580.2660522460938	2	580.265358	1158.51616	0.69172	0.00040138	-0.10784	-6.2578E-05	0.58388	0.0003388	580.265201080674	33.163	0.2078	33.163	33.037	33.244	0					8	3	3	0	0	0	0.012531	1	12274	12274		107.1	85.353	1	12498000			8410	4412	4690	4728	8145	8145					-0.0567535251989284
EEMRHIDMV	9	Unmodified	_EEMRHIDMV_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	HCT116MG_D190212_S2	2	580.265625	2	580.265358	1158.51616	0.78562	0.00045587	-0.22729	-0.00013189	0.55832	0.00032398	580.2652157679635	33.392	0.30806	33.2	33.019	33.327	-0.19297					15	5	4	0	0	0	0.00446	1	12392	12392		143.91	111.12	1	127340000			8411	4412	4690	4728	8146	8146					-0.0567535251989284
EEMRHIDMV	9	Unmodified	_EEMRHIDMV_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MSMS	HCT116MG_D190212_S3	3	387.1793212890625	3	387.179331	1158.51616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.646	1	33.356	32.856	33.856	-0.29013								0	0	0	0.69648	1	12356	12356		13.615	5.1706	1				8412	4412	4690	4728	8147	8147					-0.0567535251989284
EEMRHIDMV	9	Unmodified	_EEMRHIDMV_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	HCT116MG_D190212_S3	3	580.3549194335938	2	580.265358	1158.51616	0.47193	0.00027384	-0.085088	-4.9374E-05	0.38684	0.00022447	580.2653975754433	33.568	0.31145	33.278	33.096	33.408	-0.29013					13	5	3	0	0	0	0.16566	1	12336	12336		45.7	26.443	1	31139000			8413	4412	4690	4728	8148	8148					-0.0567535251989284
EEMRHIDMV	9	Unmodified	_EEMRHIDMV_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	HCT116MG_D190212_S4	4	580.3536376953125	2	580.265358	1158.51616	0.47257	0.00027422	-0.43918	-0.00025484	0.033393	1.9377E-05	580.2649680395341	33.684	0.24439	33.3	33.169	33.413	-0.38426					8	4	2	0	0	0	0.22506	1	12270	12270		26.268	12.362	1	6104800			8414	4412	4690	4728	8149	8149					-0.0567535251989284
EENARLFHP	9	Unmodified	_EENARLFHP_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	557.110595703125	2	556.777805	1111.54106	0.45749	0.00025472	-0.1142	-6.3586E-05	0.34328	0.00019113	556.7776351877649	31.794	0.36499	31.794	31.544	31.909	0					15	6	3	0	0	0	0.012596	1	11699	11699		106.94	79.311	1	5740500			8415	5445	4691	4729	8150	8150					-0.010252133306039468
EENARLFHP	9	Unmodified	_EENARLFHP_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	556.7778930664062	2	556.777805	1111.54106	0.47874	0.00026655	-0.52097	-0.00029006	-0.042223	-2.3509E-05	556.777463933639	32.13	0.88104	31.9	31.165	32.046	-0.23009					29	16	2	0	0	0	0.012596	1	11827	11827		106.94	70.434	1	33892000			8416	5445	4691	4729	8151	8151					-0.010252133306039468
EENARLFHP	9	Unmodified	_EENARLFHP_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	556.7786865234375	2	556.777805	1111.54106	0.28591	0.00015919	0.71407	0.00039758	0.99999	0.00055677	556.7781520931594	32.142	0.78054	31.864	31.265	32.046	-0.27841					23	14	2	0	0	0	0.030723	2	11741	11674;11741		85.642	54.373	1	11099000			8417	5445	4691	4729	8152;8153	8153					-0.010252133306039468
EENASQSTV	9	Unmodified	_EENASQSTV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	HCT116MG_D190212_S2	2	482.7144775390625	2	482.714536	963.414519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.272	1	18.902	18.402	19.402	-0.3695								0	0	0	0.76603	1	6673	6673		14.838	5.4908	1				8418	3822	4692	4730	8154	8154					-0.0686518434640675
EENASQSTV	9	Unmodified	_EENASQSTV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	HCT116MG_D190212_S3	3	483.4407043457031	2	482.714536	963.414519	0.18038	8.707E-05	-0.13817	-6.6697E-05	0.042206	2.0374E-05	482.714355080667	18.78	0.20832	18.849	18.719	18.927	0.069159					5	3	2	0	0	0	0.24622	1	6388	6388		16.942	9.0321	1	1534500			8419	3822	4692	4730	8155	8155					-0.0686518434640675
EENDKLYKV	9	Unmodified	_EENDKLYKV_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	569.292724609375	2	569.292953	1136.57135	0.3374	0.00019208	-0.57388	-0.00032671	-0.23648	-0.00013463	569.2924944235624	27.464	0.36208	27.464	27.282	27.644	0					9	6	2	0	0	0	0.0068642	2	9988	9922;9988		121.35	71.413	1	20105000			8420	1073	4693	4731	8156;8157	8157					0.008531005438726424
EENDKLYKV	9	Unmodified	_EENDKLYKV_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	379.8637390136719	3	379.864394	1136.57135	-0.12892	-4.8973E-05	-1.3252	-0.00050338	-1.4541	-0.00055235	379.8637210335286	27.464	0.20703	27.464	27.334	27.541	0					5	3	2	0	0	0	0.67781	1	9990	9990		4.1895	1.4543	1	10383000			8421	1073	4693	4731	8158	8158					0.008531005438726424
EENDKLYKV	9	Unmodified	_EENDKLYKV_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.293212890625	2	569.292953	1136.57135	0.40879	0.00023272	0.41182	0.00023445	0.82061	0.00046717	569.2930312208518	27.963	0.25731	27.621	27.449	27.706	-0.34201					14	4	4	0	0	0	0.004234	1	10166	10166		147.24	85.639	1	98207000			8422	1073	4693	4731	8159	8159					0.008531005438726424
EENDKLYKV	9	Unmodified	_EENDKLYKV_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	379.8641662597656	3	379.864394	1136.57135	-0.16028	-6.0886E-05	-0.16384	-6.2237E-05	-0.32412	-0.00012312	379.8642949490148	27.955	0.25731	27.613	27.449	27.706	-0.34201					10	4	3	0	0	0	0.11023	1	10185	10185		43.982	21.207	1	30607000			8423	1073	4693	4731	8160	8160					0.008531005438726424
EENDKLYKV	9	Unmodified	_EENDKLYKV_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	569.2928466796875	2	569.292953	1136.57135	0.55691	0.00031704	-0.052882	-3.0105E-05	0.50402	0.00028694	569.292804705984	27.789	0.41581	27.6	27.413	27.829	-0.18847					16	7	4	0	0	0	0.0035417	1	10035	10035		171.46	101.13	1	28420000			8424	1073	4693	4731	8161	8161					0.008531005438726424
EENDKLYKV	9	Unmodified	_EENDKLYKV_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	569.7940063476562	2	569.292953	1136.57135	0.53764	0.00030608	-0.041548	-2.3653E-05	0.49609	0.00028242	569.2928893910135	28.036	0.36361	27.709	27.444	27.808	-0.32741					10	6	3	0	0	0	0.0056012	1	10070	10070		132.38	82.447	1	8167400			8425	1073	4693	4731	8162	8162					0.008531005438726424
EENDKLYKV	9	Unmodified	_EENDKLYKV_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	379.864394	1136.57135	0.035148	1.3352E-05	-0.031354	-1.191E-05	0.003794	1.4412E-06	379.86431009720445	28.057	0.20781	27.726	27.596	27.804	-0.33138	0.12657	0.00013224	NaN	43.982	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3305200			8426	1073	4693	4731							0.008531005438726424
EENEDRSCCDE	11	Unmodified	_EENEDRSCCDE_					0	0	0			REV__ENSG00000135912|ENST00000392102|TTLL4	REV__ENSG00000135912|ENST00000392102|TTLL4	MSMS	HCT116MG_D190212_S2	2	664.7583618164062	2	664.721906	1327.42926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.952	1	37.859	37.359	38.359	-0.09301								0	0	0	0.95636	1	14243	14243		2.9952	0	1		+		8427	12110	4694	4732	8163	8163					-0.22135848322909624
EENEIIYNP	9	Unmodified	_EENEIIYNP_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	HCT116MG_D190212_S2	2	560.3277587890625	2	560.761486	1119.50842	0.62691	0.00035155	1.118	0.00062691	1.7449	0.00097846	560.7621649482102	39.33	0.25818	39.252	39.019	39.277	-0.077835					7	4	2	0	0	0	0.25347	1	14740	14740		14.838	0.93222	1	9132700			8428	5717	4695	4733	8164	8164					-0.046554652441500366
EENEIIYNP	9	Unmodified	_EENEIIYNP_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	HCT116MG_D190212_S3	3	561.2640380859375	2	560.761486	1119.50842	0.36442	0.00020435	0.62021	0.00034779	0.98463	0.00055214	560.76162134516	39.539	0.41771	39.238	38.872	39.29	-0.30137					16	7	3	0	0	0	0.035349	1	14643	14643		81.89	61.437	1	8583700			8429	5717	4695	4733	8165	8165					-0.046554652441500366
EENETLVEF	9	Unmodified	_EENETLVEF_					0	0	0		ENSG00000125449|ENST00000245543|ARMC7	ENSG00000125449|ENST00000245543|ARMC7	ENSG00000125449|ENST00000245543|ARMC7	MSMS	HCT116MG_D190212_S3	3	555.2543334960938	2	555.253494	1108.49243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.694	1	51.384	50.884	51.884	-0.31044								0	0	0	0.088354	1	19524	19524		74.929	38.885	1				8430	2884	4696	4734	8166	8166					-0.05747171481039004
EENFLWMPAL	10	Unmodified	_EENFLWMPAL_					0	0	0		ENST00000360317.7_1_17:38073357-38073465:-|nuORF	ENST00000360317.7_1_17:38073357-38073465:-|nuORF	ENST00000360317.7_1_17:38073357-38073465:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	625.7997436523438	2	625.299724	1248.5849	0.76414	0.00047781	-0.95323	-0.00059606	-0.1891	-0.00011824	625.2989197984691	24.196	0.20974	24.196	24.098	24.307	0					8	3	3	0	0	0	0.37629	1	8675	8675		43.858	10.413	1	5503600			8431	7347	4697	4735	8167	8167					-0.029453649485049027
EENFRSISA	9	Unmodified	_EENFRSISA_					0	0	0		nc|ENSG00000085831|Q5SRH9-2|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	MULTI-MSMS	HCT116MG_D190212_S3	3	526.754150390625	2	526.753995	1051.49344	0.3248	0.00017109	0.23136	0.00012187	0.55616	0.00029296	526.7534516305739	32.35	0.26072	32.072	31.942	32.202	-0.27841					7	4	2	0	0	0	0.23993	1	11881	11881		37.075	10.807	1	5327500			8432	1461	4698	4736	8168	8168					-0.030249123214616702
EENGFRYIP	9	Unmodified	_EENGFRYIP_					0	0	0		ENST00000476518.1_1_6:106649790-106727677:-|nuORF;nc|ENSG00000057663|Q9H1Y0-2|ATG5;ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant;ATG5|p.N236Efs*9|1|0.28|ENSG00000057663|chr6:106186663-106186664|-/T|frameshift_variant;ENSG00000057663|ENST00000369076|ATG5	ENST00000476518.1_1_6:106649790-106727677:-|nuORF	ENST00000476518.1_1_6:106649790-106727677:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	562.7720336914062	2	562.772188	1123.52982	0.52701	0.00029659	-1.0847	-0.00061041	-0.55764	-0.00031383	562.7717609442356	43.937	0.36009	43.859	43.607	43.967	-0.078373					9	6	2	0	0	0	0.047849	1	16682	16682		75.761	37.787	1	14428000			8433	215	4699	4737	8169	8169					-0.02700035424777525
EENGFRYIP	9	Unmodified	_EENGFRYIP_					0	0	0		ENST00000476518.1_1_6:106649790-106727677:-|nuORF;nc|ENSG00000057663|Q9H1Y0-2|ATG5;ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant;ATG5|p.N236Efs*9|1|0.28|ENSG00000057663|chr6:106186663-106186664|-/T|frameshift_variant;ENSG00000057663|ENST00000369076|ATG5	ENST00000476518.1_1_6:106649790-106727677:-|nuORF	ENST00000476518.1_1_6:106649790-106727677:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	562.772188	1123.52982	0.54894	0.00030893	-0.095174	-5.3561E-05	0.45377	0.00025537	562.771727109186	44.171	0.20792	43.863	43.708	43.916	-0.30759	0.0020042	0.00089317	NaN	75.761	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1878500			8434	215	4699	4737							-0.02700035424777525
EENGHLINF	9	Unmodified	_EENGHLINF_					0	0	0			REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	MULTI-MSMS	HCT116MG_D190212_S1	1	537.345703125	2	536.756538	1071.49852	0.39242	0.00021063	0.14568	7.8196E-05	0.5381	0.00028883	536.7565419679951	26.944	0.4164	26.944	26.709	27.125	0					14	7	2	0	0	0	0.67781	1	9667	9667		6.7232	0.99131	1	43627000	+		8435	17116	4700	4738	8170	8170					-0.03436608458855517
EENGLLFLEA	10	Unmodified	_EENGLLFLEA_					0	0	0		ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	MSMS	HCT116MG_D190212_S2	2	567.8056030273438	2	567.787504	1133.56045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.509	1	57.335	56.835	57.835	-0.17494								0	0	0	0.082871	1	22207	22207		86.332	42.474	1				8436	2638	4701	4739	8171	8171					-0.000983018303713834
EENGSVLQV	9	Unmodified	_EENGSVLQV_					0	0	0		ENST00000575282.5_1_17:78187814-78194112:-|nuORF;ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENSG00000181523|ENST00000326317|SGSH	ENST00000575282.5_1_17:78187814-78194112:-|nuORF	ENST00000575282.5_1_17:78187814-78194112:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	974.4780883789062	1	974.478916	973.47164	0.68991	0.0006723	-0.9183	-0.00089486	-0.22839	-0.00022256	974.4779868614056	40.924	0.20732	40.855	40.777	40.984	-0.069626					5	3	2	0	0	0	0.061422	1	15488	15488		69.105	31.131	1	9893800			8437	5636	4702	4740	8172	8172					-0.01615717070046685
EENIDEHMRP	10	Unmodified	_EENIDEHMRP_					0	0	0			REV__nc|ENSG00000023228|P28331-3|NDUFS1	REV__nc|ENSG00000023228|P28331-3|NDUFS1	MULTI-MSMS	HCT116MG_D190212_S2	2	635.2796630859375	2	635.280051	1268.54555	0.48439	0.00030772	-0.55863	-0.00035489	-0.074245	-4.7167E-05	635.2794267066907	17.439	0.52182	17.09	16.717	17.239	-0.34933					13	9	2	0	0	0	0.81435	1	5959	5959		10.824	2.0785	1	5565000	+		8438	10555	4703	4741	8173	8173					-0.07798116970025148
EENKIKVVA	9	Unmodified	_EENKIKVVA_					0	0	0		ENST00000532267.1_1_11:43351536-43357422:+|nuORF;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5	ENST00000532267.1_1_11:43351536-43357422:+|nuORF	ENST00000532267.1_1_11:43351536-43357422:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	515.3006591796875	2	515.300581	1028.58661	0.1685	8.683E-05	0.29829	0.00015371	0.4668	0.00024054	515.3005988699892	25.478	0.2614	25.109	24.978	25.239	-0.36914					9	4	3	0	0	0	0.0082095	1	9178	9178		117.76	57.687	1	19351000			8439	4825	4704	4742	8174	8174					0.07346012131756652
EENKIKVVA	9	Unmodified	_EENKIKVVA_					0	0	0		ENST00000532267.1_1_11:43351536-43357422:+|nuORF;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5	ENST00000532267.1_1_11:43351536-43357422:+|nuORF	ENST00000532267.1_1_11:43351536-43357422:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.300537109375	2	515.300581	1028.58661	0.3126	0.00016108	-0.24176	-0.00012458	0.070845	3.6507E-05	515.3003624387576	25.002	0.20844	24.896	24.787	24.995	-0.10618					6	3	2	0	0	0	0.040027	1	8917	8917		79.596	39.357	1	7679200			8440	4825	4704	4742	8175	8175					0.07346012131756652
EENKIKVVA	9	Unmodified	_EENKIKVVA_					0	0	0		ENST00000532267.1_1_11:43351536-43357422:+|nuORF;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5	ENST00000532267.1_1_11:43351536-43357422:+|nuORF	ENST00000532267.1_1_11:43351536-43357422:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	515.3006591796875	2	515.300581	1028.58661	0.4158	0.00021426	-0.012655	-6.5212E-06	0.40315	0.00020774	515.3003982190999	25.26	0.20799	24.98	24.85	25.058	-0.27958					6	3	2	0	0	0	0.066823	1	8965	8965		66.457	29.95	1	4638900			8441	4825	4704	4742	8176	8176					0.07346012131756652
EENKKMSQP	9	Unmodified	_EENKKMSQP_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	545.769775390625	2	545.763506	1089.51246	0.53445	0.00029168	-0.067233	-3.6693E-05	0.46721	0.00025499	545.7630800643519	15.562	0.20833	15.562	15.432	15.64	0					5	3	2	0	0	0	0.06555	1	5167	5167		72.968	34.994	1	2579600			8442	428	4705	4743	8177	8177					-0.028716990220800653
EENKKMSQP	9	Unmodified	_EENKKMSQP_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.2859497070312	2	545.763506	1089.51246	0.36587	0.00019968	-0.33155	-0.00018095	0.034319	1.873E-05	545.763228517177	15.772	0.36552	15.438	15.271	15.637	-0.33451					11	6	2	0	0	0	0.068828	2	5285	5235;5285		72.968	31.128	1	13897000			8443	428	4705	4743	8178;8179	8179					-0.028716990220800653
EENKNLVSP	9	Unmodified	_EENKNLVSP_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2639770507812	2	515.264196	1028.51384	0.25005	0.00012884	-0.68823	-0.00035462	-0.43818	-0.00022578	515.2640360455478	26.454	0.93327	26.093	25.454	26.387	-0.36164					38	17	3	0	0	0	0.041798	1	9487	9487		78.728	30.979	1	17488000			8444	6248	4706	4744	8180	8180					0.0007225833833217621
EENKNLVSP	9	Unmodified	_EENKNLVSP_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	HCT116MG_D190212_S3	3	515.762939453125	2	515.264196	1028.51384	0.34498	0.00017776	-0.94248	-0.00048563	-0.5975	-0.00030787	515.2640166448672	26.162	0.88619	26.034	25.494	26.38	-0.12795					29	16	2	0	0	0	0.016701	2	9362	9287;9362		99.799	34.564	1	10245000			8445	6248	4706	4744	8181;8182	8182					0.0007225833833217621
EENKRSLAA	9	Unmodified	_EENKRSLAA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2703552246094	2	509.269813	1016.52507	0.33914	0.00017271	-0.20836	-0.00010611	0.13078	6.6604E-05	509.2698174628249	17.67	0.31324	17.313	17.18	17.493	-0.35647					10	5	3	0	0	0	0.032914	1	6036	6036		83.429	21.827	1	16105000			8446	3655	4707	4745	8183	8183					0.017470804324716482
EENKRSLAA	9	Unmodified	_EENKRSLAA_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	509.269813	1016.52507	0.51478	0.00026216	-1.6719	-0.00085146	-1.1572	-0.0005893	509.770285426306	17.124	0.1564	17.124	16.994	17.15	0	-0.094401	-0.0013849	NaN	83.429	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1262000			8447	3655	4707	4745							0.017470804324716482
EENKYDYLP	9	Unmodified	_EENKYDYLP_					0	0	0		ENST00000460713.5_1_3:112282310-112292761:+|nuORF;SLC35A5|p.Y300Mfs*8|2|0.33|ENSG00000138459|chr3:112581009-112581009|T/-|frameshift_variant;ENSG00000138459|ENST00000492406|SLC35A5	ENST00000460713.5_1_3:112282310-112292761:+|nuORF	ENST00000460713.5_1_3:112282310-112292761:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	585.7698364257812	2	585.769311	1169.52407	0.29598	0.00017338	0.18492	0.00010832	0.4809	0.0002817	585.7692028149487	40.551	0.30632	40.551	40.435	40.742	0					9	5	2	0	0	0	0.055677	1	15269	15269		71.922	39.137	1	9789000			8448	3563	4708	4746	8184	8184					-0.05391178727109036
EENKYDYLP	9	Unmodified	_EENKYDYLP_					0	0	0		ENST00000460713.5_1_3:112282310-112292761:+|nuORF;SLC35A5|p.Y300Mfs*8|2|0.33|ENSG00000138459|chr3:112581009-112581009|T/-|frameshift_variant;ENSG00000138459|ENST00000492406|SLC35A5	ENST00000460713.5_1_3:112282310-112292761:+|nuORF	ENST00000460713.5_1_3:112282310-112292761:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	585.769287109375	2	585.769311	1169.52407	0.71481	0.00041872	-0.14622	-8.565E-05	0.5686	0.00033307	585.7691370153041	40.588	0.51603	40.518	40.261	40.777	-0.069626					22	9	3	0	0	0	0.047849	1	15305	15305		75.761	42.975	1	47258000			8449	3563	4708	4746	8185	8185					-0.05391178727109036
EENKYDYLP	9	Unmodified	_EENKYDYLP_					0	0	0		ENST00000460713.5_1_3:112282310-112292761:+|nuORF;SLC35A5|p.Y300Mfs*8|2|0.33|ENSG00000138459|chr3:112581009-112581009|T/-|frameshift_variant;ENSG00000138459|ENST00000492406|SLC35A5	ENST00000460713.5_1_3:112282310-112292761:+|nuORF	ENST00000460713.5_1_3:112282310-112292761:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	585.7695922851562	2	585.769311	1169.52407	0.67051	0.00039276	0.06908	4.0465E-05	0.73959	0.00043323	585.7691511071085	40.826	0.52097	40.524	40.319	40.84	-0.30161					18	9	3	0	0	0	0.020353	1	15162	15162		96.111	56.161	1	11047000			8450	3563	4708	4746	8186	8186					-0.05391178727109036
EENKYDYLP	9	Unmodified	_EENKYDYLP_					0	0	0		ENST00000460713.5_1_3:112282310-112292761:+|nuORF;SLC35A5|p.Y300Mfs*8|2|0.33|ENSG00000138459|chr3:112581009-112581009|T/-|frameshift_variant;ENSG00000138459|ENST00000492406|SLC35A5	ENST00000460713.5_1_3:112282310-112292761:+|nuORF	ENST00000460713.5_1_3:112282310-112292761:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	585.7700805664062	2	585.769311	1169.52407	0.45666	0.0002675	0.23909	0.00014005	0.69575	0.00040755	586.2708450273694	41.03	0.33687	40.652	40.379	40.716	-0.37732					11	6	2	0	0	0	0.11023	1	15039	15039		56.177	8.4284	1	2774200			8451	3563	4708	4746	8187	8187					-0.05391178727109036
EENKYTNR	8	Unmodified	_EENKYTNR_					0	0	0			REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	REV__tr|U7SNJ0|U7SNJ0_FUSNUPhosphoglucosaminemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmMPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	527.282470703125	2	527.25162	1052.48869	0.37936	0.00020002	-0.0099311	-5.2362E-06	0.36942	0.00019478	527.251525028782	23.649	0.36398	23.402	23.272	23.636	-0.24775					9	6	2	0	0	0	0.32122	1	8362	8362		7.9102	0	1	6928900	+		8452	17734	4709	4747	8188	8188					-0.03545796464254636
EENNDSTENP	10	Unmodified	_EENNDSTENP_					0	0	0		nc|ENSG00000138639|Q8N264-4|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24;ENST00000505856.1_1_4:86396696-86491907:+|nuORF;ENST00000506421.5_1_4:86396696-86644501:+|nuORF;nc|ENSG00000138639|Q8N264-5|ARHGAP24	nc|ENSG00000138639|Q8N264-4|ARHGAP24	nc|ENSG00000138639|Q8N264-4|ARHGAP24	MULTI-MSMS	HCT116MG_D190212_S3	3	574.7208251953125	2	574.720547	1147.42654	0.64287	0.00036947	0.57059	0.00032793	1.2135	0.0006974	574.7207296355399	27.679	0.31181	27.491	27.309	27.621	-0.18847					8	5	2	0	0	0	0.83158	1	10014	10014		9.3831	0	1	11036000			8453	3573	4710	4748	8189	8189					-0.14127612393895106
EENNIVHQA	9	Unmodified	_EENNIVHQA_					0	0	0		ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENSG00000006025|ENST00000007414|OSBPL7;OSBPL7|p.M794L|1|0.14|ENSG00000006025|chr17:47808578-47808578|T/A|missense_variant	ENST00000579728.5_1_17:45885659-45892067:-|nuORF	ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MSMS	HCT116MG_D190212_S2	2	527.251708984375	2	527.25162	1052.48869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.951	1	22.566	22.066	23.066	-0.3852								0	0	0	0.42657	1	8156	8156		32.305	18.798	1				8454	822	4711	4749	8190	8190					-0.03545796464254636
EENNIVHQA	9	Unmodified	_EENNIVHQA_					0	0	0		ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENSG00000006025|ENST00000007414|OSBPL7;OSBPL7|p.M794L|1|0.14|ENSG00000006025|chr17:47808578-47808578|T/A|missense_variant	ENST00000579728.5_1_17:45885659-45892067:-|nuORF	ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MSMS	HCT116MG_D190212_S3	3	527.2520751953125	2	527.25162	1052.48869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.459	1	22.44	21.94	22.94	-0.018869								0	0	0	0.30227	1	7880	7880		39.957	3.8303	1				8455	822	4711	4749	8191	8191					-0.03545796464254636
EENPDLQEA	9	Unmodified	_EENPDLQEA_					0	0	0		nc|ENSG00000104381|Q8TB36-2|GDAP1;ENSG00000104381|ENST00000220822|GDAP1	nc|ENSG00000104381|Q8TB36-2|GDAP1	nc|ENSG00000104381|Q8TB36-2|GDAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	1044.447998046875	1	1044.44801	1043.44073	0.62107	0.00064867	-0.11085	-0.00011578	0.51021	0.00053289	1044.4477458612498	26.846	0.46868	26.697	26.463	26.932	-0.14924					13	8	2	0	0	0	0.0067688	1	9689	9689		122.18	44.03	1	2100500			8456	1930	4712	4750	8192	8192					-0.0792491517495364
EENPGIFAV	9	Unmodified	_EENPGIFAV_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	HCT116MG_D190212_S2	2	975.47802734375	1	975.478188	974.470912	0.75849	0.00073989	0.0046027	4.4898E-06	0.76309	0.00074438	975.4780195083056	52.612	0.36184	52.425	52.244	52.606	-0.18725					11	6	2	0	0	0	0.0066233	1	20213	20213		123.45	45.301	1	32227000			8457	1537	4713	4751	8193	8193					-0.017345117190984638
EENPGIFAV	9	Unmodified	_EENPGIFAV_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	HCT116MG_D190212_S2	2	488.2424621582031	2	488.242732	974.470912	0.32178	0.0001571	0.014119	6.8933E-06	0.33589	0.000164	488.24269232970215	52.612	0.36184	52.425	52.244	52.606	-0.18725					13	6	3	0	0	0	0.0060607	1	20226	20226		128.37	50.216	1	28273000			8458	1537	4713	4751	8194	8194					-0.017345117190984638
EENPGIFAV	9	Unmodified	_EENPGIFAV_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	HCT116MG_D190212_S3	3	488.2429504394531	2	488.242732	974.470912	0.26282	0.00012832	-0.0241	-1.1767E-05	0.23872	0.00011656	488.2426702153417	52.836	0.41783	52.53	52.352	52.77	-0.30639					15	7	3	0	0	0	0.0046012	1	19968	19968		141.83	63.677	1	14474000			8459	1537	4713	4751	8195	8195					-0.017345117190984638
EENPGIFAV	9	Unmodified	_EENPGIFAV_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	HCT116MG_D190212_S3	3	975.4788208007812	1	975.478188	974.470912	0.71428	0.00069676	-0.0058172	-5.6746E-06	0.70846	0.00069109	975.4781591647635	52.837	0.41803	52.531	52.3	52.718	-0.30639					15	7	3	0	0	0	0.0066233	1	19983	19983		123.45	45.301	1	9553700			8460	1537	4713	4751	8196	8196					-0.017345117190984638
EENPGIFAV	9	Unmodified	_EENPGIFAV_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	HCT116MG_D190212_S4	4	488.74462890625	2	488.242732	974.470912	-0.051245	-2.502E-05	0.60849	0.00029709	0.55724	0.00027207	488.24298894990704	52.897	0.3117	52.557	52.405	52.717	-0.34023					11	5	3	0	0	0	0.0090481	1	19730	19730		115.69	47.611	1	3502400			8461	1537	4713	4751	8197	8197					-0.017345117190984638
EENPGIFAV	9	Unmodified	_EENPGIFAV_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	HCT116MG_D190212_S4	4	975.4790649414062	1	975.478188	974.470912	0.60823	0.00059332	-0.030613	-2.9862E-05	0.57762	0.00056346	975.4782202970443	52.876	0.25997	52.535	52.405	52.665	-0.34023					7	4	2	0	0	0	0.0066233	1	19734	19734		123.45	45.301	1	3185800			8462	1537	4713	4751	8198	8198					-0.017345117190984638
EENPIVLEF	9	Unmodified	_EENPIVLEF_					0	0	0		SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant;SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1089.5465087890625	1	1089.54627	1088.53899	0.65779	0.0007167	-0.074498	-8.1169E-05	0.58329	0.00063553	1089.5460095296262	57.1	0.25946	56.921	56.792	57.051	-0.17904					13	4	4	0	0	0	0.0094709	2	22046	22013;22046		114.65	52.076	1	128320000			8463	4632	4714	4752	8199;8200	8200					-0.0017368685910241766
EENPIVLEF	9	Unmodified	_EENPIVLEF_					0	0	0		SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant;SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.2770385742188	2	545.276772	1088.53899	0.56629	0.00030878	0.0011665	6.3606E-07	0.56745	0.00030942	545.2766918054409	57.1	0.25946	56.921	56.792	57.051	-0.17904					14	4	4	0	0	0	0.003706	1	22044	22044		155.03	66.072	1	118170000			8464	4632	4714	4752	8201	8201					-0.0017368685910241766
EENPIVLEF	9	Unmodified	_EENPIVLEF_					0	0	0		SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant;SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	545.2770385742188	2	545.276772	1088.53899	0.63068	0.00034389	-0.078121	-4.2598E-05	0.55255	0.0003013	545.2766319680079	57.19	0.36555	56.911	56.781	57.147	-0.27913					18	6	4	0	0	0	0.003706	1	21735	21735		155.03	66.072	1	17751000			8465	4632	4714	4752	8202	8202					-0.0017368685910241766
EENPIVLEF	9	Unmodified	_EENPIVLEF_					0	0	0		SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant;SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1089.5474853515625	1	1089.54627	1088.53899	0.57916	0.00063102	0.18648	0.00020318	0.76564	0.0008342	1089.5462115954358	57.19	0.26084	56.911	56.781	57.042	-0.27913					10	4	3	0	0	0	0.0094709	1	21738	21738		114.65	52.076	1	13984000			8466	4632	4714	4752	8203	8203					-0.0017368685910241766
EENPIVLEF	9	Unmodified	_EENPIVLEF_					0	0	0		SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant;SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	545.2772216796875	2	545.276772	1088.53899	0.69501	0.00037897	-0.11153	-6.0816E-05	0.58348	0.00031816	545.2766538154038	57.206	0.26035	56.905	56.727	56.987	-0.3004					10	4	3	0	0	0	0.0080847	1	21469	21469		118.07	52.833	1	8309600			8467	4632	4714	4752	8204	8204					-0.0017368685910241766
EENPIVLEF	9	Unmodified	_EENPIVLEF_					0	0	0		SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant;SLC4A1AP|p.L669Tfs*8|1|0.38|ENSG00000163798|chr2:27685159-27685160|-/A|frameshift_variant;ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	SLC4A1AP|p.F378Lfs*8|1|0.18|ENSG00000163798|chr2:27667375-27667375|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1089.546142578125	1	1089.54627	1088.53899	0.73724	0.00080326	-0.28189	-0.00030713	0.45535	0.00049613	1089.5457396267718	57.21	0.15627	56.909	56.779	56.935	-0.3004					6	2	3	0	0	0	0.041798	1	21472	21472		78.728	36.888	1	4689300			8468	4632	4714	4752	8205	8205					-0.0017368685910241766
EENPLNHNV	9	Unmodified	_EENPLNHNV_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	533.2522583007812	2	533.25162	1064.48869	0.69087	0.00036841	0.28184	0.00015029	0.97271	0.0005187	533.2517576924228	29.426	0.41151	29.125	28.929	29.34	-0.30095					12	7	2	0	0	0	0.063511	1	10794	10794		68.081	35.775	1	12604000			8469	259	4715	4753	8206	8206					-0.04097796464247949
EENPLNHNV	9	Unmodified	_EENPLNHNV_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2522583007812	2	533.25162	1064.48869	0.60543	0.00032284	0.29795	0.00015888	0.90337	0.00048173	533.2516078439735	29.519	0.46925	29.282	29.031	29.5	-0.23655					12	8	2	0	0	0	0.077982	1	10709	10709		62.573	16.873	1	6227300			8470	259	4715	4753	8207	8207					-0.04097796464247949
EENPLNHNV	9	Unmodified	_EENPLNHNV_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;BCOR|p.P126Rfs*35|1|0.19|ENSG00000183337|chrX:40074969-40074969|G/-|frameshift_variant;BCOR|p.L487Hfs*13|1|0.67|ENSG00000183337|chrX:40073886-40073887|-/GTGT|frameshift_variant;BCOR|p.N529Tfs*60|1|0.51|ENSG00000183337|chrX:40073760-40073760|T/-|frameshift_variant;BCOR|p.K839Qfs*5|1|0.26|ENSG00000183337|chrX:40072831-40072832|-/G|frameshift_variant;BCOR|p.K839Sfs*17|1|0.41|ENSG00000183337|chrX:40072832-40072832|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.K1061Sfs*52|1|0.28|ENSG00000183337|chrX:40071029-40071029|T/-|frameshift_variant;BCOR|p.R1215Kfs*30|1|0.14|ENSG00000183337|chrX:40063811-40063812|-/T|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	533.25162	1064.48869	0.41652	0.00022211	0.28354	0.0001512	0.70005	0.0003733	533.2517624863185	29.69	0.31212	29.341	29.085	29.397	-0.34921	0.091436	-1.249E-06	NaN	68.081	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1580900			8471	259	4715	4753							-0.04097796464247949
EENRDLRKA	9	Unmodified	_EENRDLRKA_					0	0	0		ENSG00000108091|ENST00000263102|CCDC6;CCDC6|p.N172Lfs*8|1|0.03|ENSG00000108091|chr10:59832593-59832594|-/CTTTTAAGCTTTAA|frameshift_variant;CCDC6|p.E316Yfs*13|1|0.04|ENSG00000108091|chr10:59806980-59806981|-/TTTGGTA|frameshift_variant	ENSG00000108091|ENST00000263102|CCDC6	ENSG00000108091|ENST00000263102|CCDC6	MULTI-MSMS	HCT116MG_D190212_S2	2	565.79931640625	2	565.799269	1129.58398	0.30768	0.00017408	0.12563	7.108E-05	0.43331	0.00024516	565.7993582504298	15.163	0.15636	14.837	14.706	14.863	-0.32684					6	2	3	0	0	0	0.24534	1	5027	5027		36.506	21.258	1	3566900			8472	2146	4716	4754	8208	8208					0.024375567267952647
EENRHDTAAE	10	Unmodified	_EENRHDTAAE_					0	0	0			REV__nc|ENSG00000102385|Q13474-2|DRP2	REV__nc|ENSG00000102385|Q13474-2|DRP2	MSMS	HCT116MG_D190212_S1	1	391.169677734375	3	391.170658	1170.49014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.043	1	37.043	36.543	37.543	0								0	0	0	0.95648	1	13827	13827		1.5923	0.52082	1		+		8473	11150	4717	4755	8209	8209					-0.08828207166129687
EENRKVIAP	9	Unmodified	_EENRKVIAP_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	HCT116MG_D190212_S2	2	528.296630859375	2	528.29583	1054.57711	0.51789	0.0002736	0.1582	8.3575E-05	0.67608	0.00035717	528.2960068410603	22.566	0.20693	22.18	22.051	22.258	-0.3852					6	3	2	0	0	0	0.023778	1	8011	8011		92.653	33.975	1	23003000			8474	2074	4718	4756	8210	8210					0.052002438462295686
EENRKVIAP	9	Unmodified	_EENRKVIAP_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	HCT116MG_D190212_S3	3	528.2960205078125	2	528.29583	1054.57711	0.422	0.00022294	0.15615	8.2494E-05	0.57816	0.00030544	528.2958463392465	21.703	0.31594	21.721	21.535	21.851	0.018446					9	5	2	0	0	0	0.12205	1	7586	7586		53.833	13.883	1	6784800			8475	2074	4718	4756	8211	8211					0.052002438462295686
EENRNNAYP	9	Unmodified	_EENRNNAYP_					0	0	0		nc|ENSG00000196865|Q8NBF2-2|NHLRC2;NHLRC2|p.R486Kfs*15|1|0.18|ENSG00000196865|chr10:113902548-113902549|-/A|frameshift_variant;NHLRC2|p.R486Gfs*27|3|0.36|ENSG00000196865|chr10:113902549-113902549|A/-|frameshift_variant;NHLRC2|p.N508Kfs*13|1|0.39|ENSG00000196865|chr10:113903549-113903550|-/A|frameshift_variant;ENSG00000196865|ENST00000369301|NHLRC2	nc|ENSG00000196865|Q8NBF2-2|NHLRC2	nc|ENSG00000196865|Q8NBF2-2|NHLRC2	MULTI-MSMS	HCT116MG_D190212_S1	1	553.7471313476562	2	553.746702	1105.47885	0.63116	0.0003495	-0.17771	-9.8406E-05	0.45345	0.0002511	553.7466103249335	20.736	0.41961	20.736	20.592	21.012	0					10	7	2	0	0	0	0.19461	1	7289	7289		41.84	21.386	1	2530900			8476	6102	4719	4757	8212	8212					-0.06966984469636373
EENRNNAYP	9	Unmodified	_EENRNNAYP_					0	0	0		nc|ENSG00000196865|Q8NBF2-2|NHLRC2;NHLRC2|p.R486Kfs*15|1|0.18|ENSG00000196865|chr10:113902548-113902549|-/A|frameshift_variant;NHLRC2|p.R486Gfs*27|3|0.36|ENSG00000196865|chr10:113902549-113902549|A/-|frameshift_variant;NHLRC2|p.N508Kfs*13|1|0.39|ENSG00000196865|chr10:113903549-113903550|-/A|frameshift_variant;ENSG00000196865|ENST00000369301|NHLRC2	nc|ENSG00000196865|Q8NBF2-2|NHLRC2	nc|ENSG00000196865|Q8NBF2-2|NHLRC2	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7470703125	2	553.746702	1105.47885	0.28057	0.00015536	-0.14248	-7.8898E-05	0.13809	7.6465E-05	553.7467218168057	21.211	0.46675	20.828	20.651	21.117	-0.38288					19	8	3	0	0	0	0.055677	1	7465	7465		71.922	35.795	1	17724000			8477	6102	4719	4757	8213	8213					-0.06966984469636373
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	HCT116MG_D190212_S1	1	508.23883056640625	2	508.238178	1014.4618	0.29893	0.00015193	0.27545	0.00013999	0.57438	0.00029192	508.2383337471869	25.483	0.67819	25.483	25.249	25.927	0					27	12	4	0	0	0	0.0096523	1	9150	9150		114.2	68.181	1	149740000			8478	4333	4720	4758	8214	8214					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	HCT116MG_D190212_S1	1	1015.4698486328125	1	1015.46908	1014.4618	0.78851	0.00080071	-0.20536	-0.00020853	0.58315	0.00059217	1015.4690072254584	25.483	0.26039	25.483	25.301	25.561	0					7	4	2	0	0	0	0.0041644	1	9185	9185		148.27	83.033	1	8505900			8479	4333	4720	4758	8215	8215					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	HCT116MG_D190212_S2	2	508.23870849609375	2	508.238178	1014.4618	0.49317	0.00025065	-0.29738	-0.00015114	0.19579	9.9507E-05	508.23808105445306	25.893	0.67408	25.524	25.343	26.017	-0.36914					33	12	5	0	0	0	0.02327	1	9333	9333		93.166	53.216	1	847830000			8480	4333	4720	4758	8216	8216					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	HCT116MG_D190212_S2	2	1015.4702758789062	1	1015.46908	1014.4618	0.83273	0.00084562	-0.17212	-0.00017479	0.66061	0.00067083	1015.4689521044054	25.893	0.31182	25.524	25.394	25.706	-0.36914					13	5	3	0	0	0	0.0051419	1	9346	9346		136.39	73.819	1	69626000			8481	4333	4720	4758	8217	8217					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	HCT116MG_D190212_S3	3	508.23883056640625	2	508.238178	1014.4618	0.33557	0.00017055	-0.0069372	-3.5257E-06	0.32864	0.00016703	508.2382915491891	25.596	0.8335	25.468	25.286	26.12	-0.12795					37	15	4	0	0	0	0.0096523	1	9126	9126		114.2	58.025	1	462120000			8482	4333	4720	4758	8218	8218					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	HCT116MG_D190212_S4	4	508.23834228515625	2	508.238178	1014.4618	0.21892	0.00011126	0.18807	9.5582E-05	0.40698	0.00020684	508.2382597424994	25.832	0.6246	25.542	25.36	25.984	-0.29022					25	11	4	0	0	0	0.0096523	1	9174	9174		114.2	55.523	1	140490000			8483	4333	4720	4758	8219	8219					-0.044849050754237396
EENSHLTSV	9	Unmodified	_EENSHLTSV_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	HCT116MG_D190212_S4	4	1015.4669799804688	1	1015.46908	1014.4618	0.65008	0.00066014	-0.43053	-0.00043719	0.21955	0.00022295	1015.4683355706351	25.837	0.26023	25.547	25.412	25.672	-0.29022					9	4	3	0	0	0	0.0043772	1	9181	9181		145.13	88.953	1	5945600			8484	4333	4720	4758	8220	8220					-0.044849050754237396
EENSLHVVV	9	Unmodified	_EENSLHVVV_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.L531Ffs*34|1|0.13|ENSG00000144357|chr2:169905235-169905236|-/T|frameshift_variant;UBR3|p.L920Cfs*18|1|0.15|ENSG00000144357|chr2:169942585-169942585|T/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	HCT116MG_D190212_S2	2	513.26611328125	2	513.266739	1024.51892	0.27308	0.00014017	0.16724	8.5841E-05	0.44033	0.00022601	513.2664181455752	39.483	0.14846	39.405	39.328	39.477	-0.077835					4	2	2	0	0	0	0.041798	1	14890	14890		78.728	44.626	1	38899000			8485	3860	4721	4759	8221	8221					0.007645622009476938
EENSLHVVV	9	Unmodified	_EENSLHVVV_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.L531Ffs*34|1|0.13|ENSG00000144357|chr2:169905235-169905236|-/T|frameshift_variant;UBR3|p.L920Cfs*18|1|0.15|ENSG00000144357|chr2:169942585-169942585|T/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MSMS	HCT116MG_D190212_S3	3	513.266357421875	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.721	1	39.419	38.919	39.919	-0.30137								0	0	0	0.014624	1	14745	14745		99.799	51.453	1				8486	3860	4721	4759	8222	8222					0.007645622009476938
EENSLHVVV	9	Unmodified	_EENSLHVVV_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.L531Ffs*34|1|0.13|ENSG00000144357|chr2:169905235-169905236|-/T|frameshift_variant;UBR3|p.L920Cfs*18|1|0.15|ENSG00000144357|chr2:169942585-169942585|T/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	513.266739	1024.51892	0.17377	8.9188E-05	-0.25187	-0.00012928	-0.078102	-4.0087E-05	513.2665721608257	39.475	0.25924	39.475	39.346	39.605	0	0.034829	-8.6824E-05	NaN	78.728	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4722600			8487	3860	4721	4759							0.007645622009476938
EENTNWRH	8	Unmodified	_EENTNWRH_					0	0	0			REV__CAMTA1|p.K1259Ifs*22|1|0.18|ENSG00000171735|chr1:7738075-7738076|-/TACAACT|frameshift_variant	REV__CAMTA1|p.K1259Ifs*22|1|0.18|ENSG00000171735|chr1:7738075-7738076|-/TACAACT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	543.2421875	2	543.241587	1084.46862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.986	1	33.986	33.486	34.486	0								0	0	0	0.8837	1	12596	12596		13.508	0.97634	1		+		8488	10085	4722	4760	8223	8223					-0.07023547404173769
EENYNVVAP	9	Unmodified	_EENYNVVAP_					0	0	0		SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant;nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1034.4786376953125	1	1034.47892	1033.47164	0.39933	0.0004131	-0.74257	-0.00076817	-0.34324	-0.00035508	1034.4776377583376	36.004	0.25479	35.704	35.527	35.781	-0.30042					7	4	2	0	0	0	0.0077497	1	13299	13299		118.89	64.121	1	5784500			8489	5760	4723	4761	8224	8224					-0.04375717070047358
EENYNVVAP	9	Unmodified	_EENYNVVAP_					0	0	0		SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant;nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	517.742919921875	2	517.743096	1033.47164	0.085312	4.417E-05	-0.035571	-1.8417E-05	0.049741	2.5753E-05	517.7430326341694	36.004	0.30686	35.704	35.527	35.834	-0.30042					8	5	2	0	0	0	0.24895	1	13316	13316		36.127	19.014	1	5053100			8490	5760	4723	4761	8225	8225					-0.04375717070047358
EENYNVVAP	9	Unmodified	_EENYNVVAP_					0	0	0		SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant;nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	517.7426147460938	2	517.743096	1033.47164	0.50219	0.00026001	-1.0903	-0.00056452	-0.58815	-0.00030451	517.7425207924335	36.033	0.19879	35.647	35.526	35.725	-0.38558					5	3	2	0	0	0	0.41514	1	13195	13195		21.747	6.9084	1	3652900			8491	5760	4723	4761	8226	8226					-0.04375717070047358
EEPAAPSEAH	10	Unmodified	_EEPAAPSEAH_					0	0	0		MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant;ENSG00000179455|ENST00000314520|MKRN3;MKRN3|p.A162Gfs*15|1|0.42|ENSG00000179455|chr15:23566257-23566258|-/C|frameshift_variant	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	519.229248046875	2	519.230353	1036.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.936	1	25.567	25.067	26.067	-0.36914								0	0	0	0.72975	1	9362	9362		36.127	7.0454	1				8492	5559	4724	4762	8227	8227					-0.07061191592470095
EEPITEKPSY	10	Unmodified	_EEPITEKPSY_					0	0	0			REV__ENSG00000113916|ENST00000406870|BCL6	REV__ENSG00000113916|ENST00000406870|BCL6	MULTI-SECPEP	HCT116MG_D190212_S3	3	597.5331420898438	2	596.790244	1191.56593	0.7902	0.00047158	-0.51504	-0.00030737	0.27515	0.00016421	596.7899166217569	44.336	0.25919	44.029	43.864	44.123	-0.30759					6	4	2	0	0	0	0.30856	1	16508	16508		10.824	7.2274	1	4549000	+		8493	11498	4725	4763	8228	8228					-0.02218623038561418
EEPKGPRGSQ	10	Unmodified	_EEPKGPRGSQ_					0	0	0		nc|ENSG00000139154|Q6ZN18|AEBP2;ENSG00000139154|ENST00000266508|AEBP2	nc|ENSG00000139154|Q6ZN18|AEBP2	nc|ENSG00000139154|Q6ZN18|AEBP2	MULTI-SECPEP	HCT116MG_D190212_S2	2	542.2843627929688	2	542.772719	1083.53089	0.51573	0.00027992	0.24741	0.00013429	0.76314	0.00041421	542.7728329402804	23.767	0.67553	23.384	22.884	23.56	-0.38324					24	12	3	0	0	0	0.28233	1	8502	8502		21.537	21.537	1	11316000			8494	3603	4726	4764	8229	8229					-0.007538210558550418
EEPLGSGPSV	10	Unmodified	_EEPLGSGPSV_					0	0	0		LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2	LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	486.2362365722656	2	486.237647	970.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.507	1	43.133	42.633	43.633	-0.37433								0	0	0	0.86471	1	15995	15995		20.454	3.5113	1				8495	5426	4727	4765	8230	8230					-0.02567119444324817
EEPLLPQFCS	10	Unmodified	_EEPLLPQFCS_					0	0	0			REV__ENST00000495130.5_1_10:21823431-21846627:+|nuORF	REV__ENST00000495130.5_1_10:21823431-21846627:+|nuORF	MSMS	HCT116MG_D190212_S4	4	581.7762451171875	2	581.776082	1161.53761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.127	1	35.742	35.242	36.242	-0.38558								0	0	0	0.92607	1	13209	13209		10.074	1.3285	1		+		8496	16082	4728	4766	8231	8231					-0.036696442195079726
EEPLWRHVC	9	Unmodified	_EEPLWRHVC_					0	0	0		ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	MULTI-SECPEP	HCT116MG_D190212_S2	2	584.78271484375	2	584.782033	1167.54951	0.48255	0.00028219	0.82323	0.00048141	1.3058	0.0007636	584.7825975678194	46.299	0.25862	46.188	46.059	46.317	-0.11121					7	4	2	0	0	0	0.25874	1	17672	17672		7.2892	4.9865	1	12364000			8497	2588	4729	4767	8232	8232					-0.0275598268565318
EEPMSSPDEPG	11	Unmodified	_EEPMSSPDEPG_					0	0	0			REV__nc|ENSG00000074416|Q99685-2|MGLL	REV__nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	HCT116MG_D190212_S3	3	587.7327270507812	2	587.732068	1173.44958	0.61445	0.00036113	0.22281	0.00013095	0.83726	0.00049208	587.732175063563	25.492	0.36389	25.386	25.204	25.568	-0.10618					13	6	3	0	0	0	0.69749	1	9127	9127		22.736	0	1	20337000	+		8498	10797	4730	4768	8233	8233					-0.13020309600779
EEPNERESKDS	11	Unmodified	_EEPNERESKDS_					0	0	0			REV__OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant	REV__OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	660.4791870117188	2	660.289128	1318.5637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.087	1	17.087	16.587	17.587	0								0	0	0	0.95196	1	5793	5793		5.2969	0	1		+		8499	10553	4731	4769	8234	8234					-0.0828370351432568
EEPPPALV	8	Unmodified	_EEPPPALV_					0	0	0			REV__ENST00000529747.5_1_8:144917890-144921694:-|nuORF	REV__ENST00000529747.5_1_8:144917890-144921694:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	426.22906494140625	2	426.229094	850.443634	0.056315	2.4003E-05	0.22688	9.6703E-05	0.2832	0.00012071	426.229197325357	39.529	0.30249	39.451	39.328	39.631	-0.077835					9	5	2	0	0	0	0.47906	2	14882	14879;14882		42.968	0	1	70114000	+		8500	13832	4732	4770	8235;8236	8236					0.012430047405246114
EEPQPLTAGSP	11	Unmodified	_EEPQPLTAGSP_					0	0	0			REV__ENST00000407558.8_1_16:3536345-3536525:+|nuORF	REV__ENST00000407558.8_1_16:3536345-3536525:+|nuORF	MSMS	HCT116MG_D190212_S3	3	563.2748413085938	2	563.274761	1124.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.252	1	27.082	26.582	27.582	-0.16933								0	0	0	0.9387	1	9813	9813		12.241	1.4167	1		+		8501	15424	4733	4771	8237	8237					-0.022317763528235446
EEPRFQVP	8	Unmodified	_EEPRFQVP_					0	0	0		ENSG00000151790|ENST00000536354|TDO2;ENST00000510293.1_1_4:156835507-156839956:+|nuORF	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	MULTI-SECPEP	HCT116MG_D190212_S3	3	500.77471923828125	2	501.256174	1000.49779	0.54451	0.00027294	-0.26795	-0.00013431	0.27656	0.00013863	501.2560214660288	32.661	0.78115	32.376	31.883	32.664	-0.2851					47	14	4	0	0	0	0.23993	1	12030	12030		26.884	7.5217	1	70033000			8502	4128	4734	4772	8238	8238					-0.0024340310790194053
EEPRVPPL	8	Unmodified	_EEPRVPPL_					0	0	0		ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3	ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	468.7609558105469	2	468.761092	935.507631	0.351	0.00016453	-0.81306	-0.00038113	-0.46206	-0.0002166	468.7606883196989	45.909	0.20923	45.909	45.765	45.975	0					5	3	2	0	0	0	0.79062	1	17425	17425		12.532	6.3258	1	7785800			8503	207	4735	4773	8239	8239					0.03729784897461741
EEPRVPPTKV	10	Unmodified	_EEPRVPPTKV_					0	0	0		nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	nc|ENSG00000155657|Q8WZ42-11|TTN	nc|ENSG00000155657|Q8WZ42-11|TTN	MSMS	HCT116MG_D190212_S1	1	576.3243408203125	2	576.324588	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.842	1	43.842	43.342	44.342	0								0	0	0	0.93854	1	16575	16575		7.2892	0	1				8504	9506	4736	4774	8240	8240					0.06533086051786086
EEPSYEGSE	9	Unmodified	_EEPSYEGSE_					0	0	0		ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-MSMS	HCT116MG_D190212_S4	4	1026.3890380859375	1	1026.38983	1025.38255	0.48107	0.00049376	-0.59644	-0.00061218	-0.11538	-0.00011842	1026.389110465127	49.758	0.36916	49.396	49.218	49.587	-0.36213					10	9	2	0	0	0	0.2682	1	18490	18490		34.102	5.6156	1	3935700			8505	3180	4737	4775	8241	8241					-0.1291259682020609
EEPTVDPV	8	Unmodified	_EEPTVDPV_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-6|DEF8	REV__nc|ENSG00000140995|Q6ZN54-6|DEF8	MSMS	HCT116MG_D190212_S4	4	443.2131652832031	2	443.21364	884.412728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.005	1	35.619	35.119	36.119	-0.38558								0	0	0	0.8837	1	13159	13159		10.183	0	1		+		8506	12320	4738	4776	8242	8242					-0.034101933643796656
EEPWQHLGP	9	Unmodified	_EEPWQHLGP_					0	0	0			REV__ENST00000248846.9_2_22:50664617-50678653:-|nuORF	REV__ENST00000248846.9_2_22:50664617-50678653:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.2494506835938	2	546.759081	1091.50361	0.41744	0.00022824	-0.40414	-0.00022097	0.013305	7.2749E-06	546.7588884135414	20.429	0.31866	20.05	19.917	20.236	-0.37949					8	5	2	0	0	0	0.23301	1	7102	7102		6.7232	0.51738	1	23344000	+		8507	14576	4739	4777	8243	8243					-0.038483045962493634
EEQAINRQT	9	Unmodified	_EEQAINRQT_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	HCT116MG_D190212_S2	2	544.7699584960938	2	544.770177	1087.5258	0.49848	0.00027156	0.082099	4.4725E-05	0.58058	0.00031628	544.7700581151821	17.614	0.20877	17.258	17.127	17.336	-0.35647					5	3	2	0	0	0	0.094138	1	6024	6024		59.368	19.129	1	4731400			8508	2629	4740	4778	8244	8244					-0.014461249184705594
EEQAQRARD	9	Unmodified	_EEQAQRARD_					0	0	0			REV__UBE3B|p.R20Q|1|0.23|ENSG00000151148|chr12:109483610-109483610|G/A|missense_variant	REV__UBE3B|p.R20Q|1|0.23|ENSG00000151148|chr12:109483610-109483610|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	551.7638549804688	2	551.765426	1101.5163	0.24566	0.00013555	-2.9613	-0.001634	-2.7157	-0.0014984	551.7638948129398	21.838	0.26048	21.453	21.323	21.583	-0.38503					7	4	2	0	0	0	0.43775	1	7726	7726		20.454	0.039092	1	23278000	+		8509	18037	4741	4779	8245	8245					-0.03039893204004329
EEQASRQI	8	Unmodified	_EEQASRQI_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MSMS	HCT116MG_D190212_S1	1	480.7413330078125	2	480.740888	959.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.966	1	19.966	19.466	20.466	0								0	0	0	0.40715	1	6953	6953		48.346	2.3249	1				8510	3781	4742	4780	8246	8246					-0.01413181492955573
EEQASRQI	8	Unmodified	_EEQASRQI_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	HCT116MG_D190212_S2	2	480.74090576171875	2	480.740888	959.467223	0.16295	7.8339E-05	0.055845	2.6847E-05	0.2188	0.00010519	480.74085667879365	20.483	0.31954	20.103	19.969	20.289	-0.37949					10	5	3	0	0	0	0.040608	1	7164	7164		134.3	23.621	1	37518000			8511	3781	4742	4780	8247	8247					-0.01413181492955573
EEQASRQI	8	Unmodified	_EEQASRQI_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	HCT116MG_D190212_S3	3	480.740966796875	2	480.740888	959.467223	0.19841	9.5382E-05	0.24779	0.00011912	0.4462	0.00021451	480.740876780382	19.615	0.41671	19.675	19.438	19.854	0.059828					12	7	3	0	0	0	0.057078	1	6737	6737		115.69	4.405	1	14649000			8512	3781	4742	4780	8248	8248					-0.01413181492955573
EEQASRQI	8	Unmodified	_EEQASRQI_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	HCT116MG_D190212_S4	4	480.74102783203125	2	480.740888	959.467223	0.2839	0.00013648	-0.040041	-1.9249E-05	0.24386	0.00011723	480.7410033854413	19.956	0.25996	19.762	19.632	19.892	-0.19367					8	4	2	0	0	0	0.31873	1	6828	6828		57.471	2.6978	1	3608800			8513	3781	4742	4780	8249	8249					-0.01413181492955573
EEQASRQI	8	Unmodified	_EEQASRQI_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	480.740888	959.467223	0.30202	0.00014519	-0.27542	-0.00013241	0.026592	1.2784E-05	480.74075638132507	20.736	0.25982	20.526	20.344	20.604	-0.20959	0.18644	-0.00025615	NaN	134.3	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5044300			8514	3781	4742	4780							-0.01413181492955573
EEQATETQP	9	Unmodified	_EEQATETQP_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S3	3	516.7282104492188	2	516.727643	1031.44073	0.13128	6.7836E-05	0.31239	0.00016142	0.44367	0.00022926	516.7276656401501	18.102	0.46833	18.179	17.945	18.413	0.076334					16	8	3	0	0	0	0.12205	1	6119	6119		53.833	6.0841	1	7943200			8515	3710	4743	4781	8250	8250					-0.07372915174937589
EEQATETQP	9	Unmodified	_EEQATETQP_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S4	4	516.727294921875	2	516.727643	1031.44073	0.14724	7.6081E-05	0.027639	1.4282E-05	0.17488	9.0363E-05	516.7275587596013	18.238	0.3614	18.063	17.896	18.257	-0.17501					10	6	2	0	0	0	0.19461	1	6119	6119		41.84	19.103	1	2224000			8516	3710	4743	4781	8251	8251					-0.07372915174937589
EEQATWSPDL	10	Unmodified	_EEQATWSPDL_					0	0	0			REV__nc|ENSG00000276234|O75478-2|TADA2A	REV__nc|ENSG00000276234|O75478-2|TADA2A	MULTI-SECPEP	HCT116MG_D190212_S3	3	588.5464477539062	2	588.264393	1174.51423	0.41329	0.00024312	3.1123	0.0018308	3.5255	0.002074	588.766952787862	49.787	0.20844	49.472	49.394	49.602	-0.31525					5	3	2	0	0	0	0.29442	1	18785	18785		20.454	6.5476	1	10058000	+		8517	14459	4744	4782	8252	8252					-0.06604366732472045
EEQDSLSHKA	10	Unmodified	_EEQDSLSHKA_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MSMS	HCT116MG_D190212_S2	2	572.2677001953125	2	572.267467	1142.52038	0.39867	0.00022815	-0.22864	-0.00013084	0.17003	9.7302E-05	572.2674025512201	17.093	0.26048	16.743	16.613	16.873	-0.34933					7	4	2	0	0	0	0.031798	1	5822	5822		100.71	50.776	1	10311000			8518	3685	4745	4783	8253	8253					-0.045178485009500946
EEQEQMQEEQE	11	Unmodified	_EEQEQMQEEQE_					0	0	0			REV__nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	REV__nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	MSMS	HCT116MG_D190212_S3	3	718.7778930664062	2	718.777735	1435.54092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.554	1	52.248	51.748	52.748	-0.30639								0	0	0	0.95196	1	19870	19870		5.2969	3.6443	1		+		8519	13485	4746	4784	8254	8254					-0.15943090694077
EEQERRLQA	9	Unmodified	_EEQERRLQA_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF;ENST00000532131.1_1_1:36644030-36644198:+|nuORF	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-SECPEP	HCT116MG_D190212_S2	2	579.8104248046875	2	579.796726	1157.5789	0.43884	0.00025444	0.018181	1.0541E-05	0.45702	0.00026498	579.7968891099325	19.447	0.25994	19.077	18.94	19.2	-0.3695					11	4	3	0	0	0	0.24169	1	6769	6769		10.8	5.0677	1	26688000			8520	2546	4747	4785	8255	8255					0.006412528642158577
EEQEVNKMTP	10	Unmodified	_EEQEVNKMTP_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000466097.1_1_22:38042800-38046733:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	HCT116MG_D190212_S3	3	602.7792358398438	2	602.779353	1203.54415	0.68537	0.00041313	0.32024	0.00019304	1.0056	0.00060616	602.7792249364059	26.291	0.36473	26.142	25.994	26.359	-0.14924					8	6	2	0	0	0	0.24395	1	9438	9438		55.503	28.28	1	2288000			8521	1663	4748	4786	8256	8256					-0.04947751058784888
EEQEVNKMTP	10	Unmodified	_EEQEVNKMTP_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000466097.1_1_22:38042800-38046733:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	602.779353	1203.54415	0.70141	0.00042279	-0.014324	-8.6344E-06	0.68708	0.00041416	603.2806061159152	26.367	0.36219	26.006	25.87	26.232	-0.36164	-0.068216	-0.0002825	NaN	55.503	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7991200			8522	1663	4748	4786							-0.04947751058784888
EEQEYVQTV	9	Unmodified	_EEQEYVQTV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MSMS	HCT116MG_D190212_S3	3	562.759033203125	2	562.758943	1123.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.356	1	33.066	32.566	33.566	-0.29013								0	0	0	0.1107	1	12239	12239		53.833	15.657	1				8523	3324	4749	4787	8257	8257					-0.05347769106765554
EEQFASTPR	9	Unmodified	_EEQFASTPR_					0	0	0		ENST00000343544.8_1_2:88485199-88485639:+|nuORF	ENST00000343544.8_1_2:88485199-88485639:+|nuORF	ENST00000343544.8_1_2:88485199-88485639:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7542114257812	2	532.753995	1063.49344	0.39357	0.00020968	-0.11771	-6.2712E-05	0.27586	0.00014696	532.7538474421642	23.189	0.20856	22.804	22.674	22.882	-0.3852					5	3	2	0	0	0	0.21258	1	8280	8280		39.95	3.8227	1	14296000			8524	7246	4750	4788	8258	8258					-0.03576912321477721
EEQFASTPR	9	Unmodified	_EEQFASTPR_					0	0	0		ENST00000343544.8_1_2:88485199-88485639:+|nuORF	ENST00000343544.8_1_2:88485199-88485639:+|nuORF	ENST00000343544.8_1_2:88485199-88485639:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	532.754638671875	2	532.753995	1063.49344	0.4103	0.00021859	-0.45069	-0.00024011	-0.04039	-2.1518E-05	532.7537243067524	22.716	0.9775	22.697	21.866	22.844	-0.018869					26	18	2	0	0	0	0.077982	1	7980	7980		62.573	0	1	10309000			8525	7246	4750	4788	8259	8259					-0.03576912321477721
EEQFASTPR	9	Unmodified	_EEQFASTPR_					0	0	0		ENST00000343544.8_1_2:88485199-88485639:+|nuORF	ENST00000343544.8_1_2:88485199-88485639:+|nuORF	ENST00000343544.8_1_2:88485199-88485639:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	532.753995	1063.49344	0.39357	0.00020968	-0.11771	-6.2712E-05	0.27586	0.00014696	532.7538474421642	23.189	0.20856	22.804	22.674	22.882	-0.3852	0.053549	0.00022304	NaN	62.573	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14296000			8526	7246	4750	4788							-0.03576912321477721
EEQGLHVHS	9	Unmodified	_EEQGLHVHS_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MSMS	HCT116MG_D190212_S3	3	518.246337890625	2	518.246338	1034.47812	0.17593	9.1177E-05	-0.17445	-9.0406E-05	0.0014877	7.7098E-07	518.2461285752755	22.779	0.3003	22.76	22.595	22.896	-0.018869					10	5	2	0	0	0	0.30117	1	8035	8035		30.637	30.637	1	23252000			8527	4362	4751	4789	8260	8260					-0.03773779118660059
EEQGVAHNV	9	Unmodified	_EEQGVAHNV_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1;ENST00000470316.5_1_7:151049232-151057334:+|nuORF;NUB1|p.K330Nfs*2|2|0.38|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	HCT116MG_D190212_S2	2	491.7331848144531	2	491.733063	981.451573	0.28232	0.00013883	-0.033715	-1.6579E-05	0.24861	0.00012225	491.7330215210753	20.866	0.52042	20.483	20.338	20.859	-0.38288					12	9	2	0	0	0	0.063511	1	7325	7325		68.081	7.6912	1	31906000			8528	911	4752	4790	8261	8261					-0.039894680100019286
EEQGVAHNV	9	Unmodified	_EEQGVAHNV_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1;ENST00000470316.5_1_7:151049232-151057334:+|nuORF;NUB1|p.K330Nfs*2|2|0.38|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	HCT116MG_D190212_S3	3	491.7331237792969	2	491.733063	981.451573	0.075341	3.7048E-05	0.1279	6.2894E-05	0.20324	9.9942E-05	491.73305132674454	20.133	0.26034	20.181	20.051	20.311	0.048107					10	4	3	0	0	0	0.020353	1	6947	6947		96.111	45.256	1	11970000			8529	911	4752	4790	8262	8262					-0.039894680100019286
EEQIKNLTA	9	Unmodified	_EEQIKNLTA_					0	0	0		MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2797241210938	2	523.279846	1044.54514	0.37312	0.00019524	0.77944	0.00040787	1.1526	0.00060311	523.2796425856047	29.822	0.30984	29.521	29.392	29.702	-0.30095					9	5	3	0	0	0	0.60612	1	10963	10963		10.824	1.4765	1	24099000			8530	1366	4753	4791	8263	8263					0.02464831372435583
EEQIKNLTA	9	Unmodified	_EEQIKNLTA_					0	0	0		MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	523.2798461914062	2	523.279846	1044.54514	0.50874	0.00026621	-0.40282	-0.00021079	0.10591	5.5422E-05	523.2794047375179	29.925	0.26796	29.689	29.5	29.768	-0.23655					10	4	3	0	0	0	0.2853	1	10896	10896		32.305	11.852	1	16639000			8531	1366	4753	4791	8264	8264					0.02464831372435583
EEQIKNLTA	9	Unmodified	_EEQIKNLTA_					0	0	0		MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	523.2799072265625	2	523.279846	1044.54514	0.32155	0.00016826	-0.12367	-6.4713E-05	0.19788	0.00010355	523.2796762475151	30.084	0.26013	29.727	29.545	29.805	-0.3571					6	4	2	0	0	0	0.2853	1	10899	10899		32.305	11.852	1	5469400			8532	1366	4753	4791	8265	8265					0.02464831372435583
EEQIKVWTA	9	Unmodified	_EEQIKVWTA_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	HCT116MG_D190212_S2	2	552.2894897460938	2	552.290214	1102.56587	0.2599	0.00014354	-0.64924	-0.00035857	-0.38934	-0.00021503	552.2898656823421	41.085	0.20654	41.017	40.882	41.089	-0.068199					10	3	4	0	0	0	0.0082095	1	15518	15518		117.76	79.787	1	28051000			8533	6253	4754	4792	8266	8266					0.018694217520987877
EEQIKVWTA	9	Unmodified	_EEQIKVWTA_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7910766601562	2	552.290214	1102.56587	0.34074	0.00018819	-0.48279	-0.00026664	-0.14206	-7.8457E-05	552.7911638616462	41.325	0.20786	41.023	40.893	41.1	-0.30185					6	3	2	0	0	0	0.082877	1	15395	15395		61.602	38.866	1	13819000			8534	6253	4754	4792	8267	8267					0.018694217520987877
EEQKAIKA	8	Unmodified	_EEQKAIKA_					0	0	0		ENST00000465588.2_1_1:33116028-33116094:-|nuORF;ENST00000466361.1_1_1:33100367-33116130:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000465588.2_1_1:33116028-33116094:-|nuORF	ENST00000465588.2_1_1:33116028-33116094:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	458.7587585449219	2	458.758549	915.502546	0.17569	8.0598E-05	0.17583	8.0665E-05	0.35152	0.00016126	458.7585360215294	17.04	0.41611	16.691	16.405	16.821	-0.34933					13	7	2	0	0	0	0.73234	1	5715	5715		19.257	1.1106	1	11040000			8535	5414	4755	4793	8268	8268					0.04141481034844219
EEQKAIKA	8	Unmodified	_EEQKAIKA_					0	0	0		ENST00000465588.2_1_1:33116028-33116094:-|nuORF;ENST00000466361.1_1_1:33100367-33116130:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000465588.2_1_1:33116028-33116094:-|nuORF	ENST00000465588.2_1_1:33116028-33116094:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	458.758549	915.502546	0.20053	9.1994E-05	0.054237	2.4882E-05	0.25477	0.00011688	458.7585492375486	16.968	0.20877	16.968	16.837	17.046	0	0.13845	-8.988E-05	NaN	19.257	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3626500			8536	5414	4755	4793							0.04141481034844219
EEQKAKYLP	9	Unmodified	_EEQKAKYLP_					0	0	0		ENST00000505192.5_1_3:128598473-128627108:+|nuORF;ENSG00000177646|ENST00000308982|ACAD9	ENST00000505192.5_1_3:128598473-128627108:+|nuORF	ENST00000505192.5_1_3:128598473-128627108:+|nuORF	MSMS	HCT116MG_D190212_S4	4	553.2986450195312	2	553.298039	1104.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.285	1	27.953	27.453	28.453	-0.33138								0	0	0	0.22243	1	10164	10164		58.679	8.7458	1				8537	5466	4756	4794	8269	8269					0.03341708269135779
EEQKELQRA	9	Unmodified	_EEQKELQRA_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MULTI-MSMS	HCT116MG_D190212_S2	2	565.7938232421875	2	565.793652	1129.57275	0.44791	0.00025342	-0.17807	-0.00010075	0.26983	0.00015267	565.7935319808573	17.51	0.47009	17.161	16.978	17.448	-0.34933					19	8	4	0	0	0	0.0034669	1	5964	5964		163.69	49.485	1	56008000			8538	3763	4757	4795	8270	8270					0.013147346326604747
EEQKELQRA	9	Unmodified	_EEQKELQRA_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MULTI-MSMS	HCT116MG_D190212_S3	3	566.2954711914062	2	565.793652	1129.57275	0.34327	0.00019422	0.14748	8.3444E-05	0.49075	0.00027766	565.7936133598996	16.251	0.31195	16.336	16.185	16.497	0.085424					12	5	3	0	0	0	0.0010417	1	5388	5388		192.32	78.119	1	10782000			8539	3763	4757	4795	8271	8271					0.013147346326604747
EEQKELQRAA	10	Unmodified	_EEQKELQRAA_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MULTI-MSMS	HCT116MG_D190212_S1	1	601.3121337890625	2	601.312209	1200.60986	0.68558	0.00041225	1.0047	0.00060412	1.6903	0.0010164	601.3117197835462	17.698	0.20835	17.698	17.568	17.776	0					8	3	3	0	0	0	0.8224	1	6066	6066		10.151	3.9448	1	3656300			8540	3763	4758	4796	8272	8272					0.017584061784191363
EEQKELQRAA	10	Unmodified	_EEQKELQRAA_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MULTI-MSMS	HCT116MG_D190212_S2	2	601.3123779296875	2	601.312209	1200.60986	0.4695	0.00028232	-0.082889	-4.9842E-05	0.38661	0.00023247	601.3120618692386	18.241	0.2612	17.884	17.754	18.015	-0.35647					9	4	3	0	0	0	0.0052575	1	6283	6283		166.77	96.437	1	21573000			8541	3763	4758	4796	8273	8273					0.017584061784191363
EEQKELQRAA	10	Unmodified	_EEQKELQRAA_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MULTI-MSMS	HCT116MG_D190212_S3	3	601.3124389648438	2	601.312209	1200.60986	0.33387	0.00020076	0.31816	0.00019131	0.65203	0.00039207	601.3123425027519	17.218	0.26014	17.303	17.173	17.433	0.084467					9	4	3	0	0	0	0.092421	1	5791	5791		75.571	33.731	1	6118200			8542	3763	4758	4796	8274	8274					0.017584061784191363
EEQKELQRAA	10	Unmodified	_EEQKELQRAA_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MSMS	HCT116MG_D190212_S4	4	601.3121948242188	2	601.312209	1200.60986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.608	1	17.438	16.938	17.938	-0.17047								0	0	0	0.93466	1	5853	5853		8.1555	1.9497	1				8543	3763	4758	4796	8275	8275					0.017584061784191363
EEQKIVVKV	9	Unmodified	_EEQKIVVKV_					0	0	0		ENSG00000109475|ENST00000394667|RPL34;ENST00000431295.1_1_1:153968319-153968433:+|nuORF;ENST00000407959.1_1_6:5788581-5788740:-|nuORF	ENSG00000109475|ENST00000394667|RPL34	ENSG00000109475|ENST00000394667|RPL34	MULTI-MSMS	HCT116MG_D190212_S1	1	536.8262939453125	2	536.324057	1070.63356	0.5648	0.00030291	0.13238	7.0998E-05	0.69718	0.00037391	536.3239229321802	31.102	0.26052	31.102	30.971	31.232	0					10	4	3	0	0	0	0.0059958	1	11445	11445		128.93	81.184	1	13849000			8544	2209	4759	4797	8276	8276					0.10106871682910423
EEQKIVVKV	9	Unmodified	_EEQKIVVKV_					0	0	0		ENSG00000109475|ENST00000394667|RPL34;ENST00000431295.1_1_1:153968319-153968433:+|nuORF;ENST00000407959.1_1_6:5788581-5788740:-|nuORF	ENSG00000109475|ENST00000394667|RPL34	ENSG00000109475|ENST00000394667|RPL34	MULTI-MSMS	HCT116MG_D190212_S2	2	536.3242797851562	2	536.324057	1070.63356	0.69642	0.0003735	0.04153	2.2274E-05	0.73794	0.00039578	536.3241788753758	31.421	0.67304	31.172	30.888	31.561	-0.24883					20	12	4	0	0	0	0.0036431	1	11594	11594		155.95	93.381	1	115580000			8545	2209	4759	4797	8277	8277					0.10106871682910423
EEQKIVVKV	9	Unmodified	_EEQKIVVKV_					0	0	0		ENSG00000109475|ENST00000394667|RPL34;ENST00000431295.1_1_1:153968319-153968433:+|nuORF;ENST00000407959.1_1_6:5788581-5788740:-|nuORF	ENSG00000109475|ENST00000394667|RPL34	ENSG00000109475|ENST00000394667|RPL34	MSMS	HCT116MG_D190212_S3	3	536.325439453125	2	536.324057	1070.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.49	1	31.219	30.719	31.719	-0.27028								0	0	0	1.2821E-09	1	11506	11506		168.54	108.46	1				8546	2209	4759	4797	8278	8278					0.10106871682910423
EEQKKLGD	8	Unmodified	_EEQKKLGD_					0	0	0			REV__ENST00000557552.1_1_14:105241736-105242162:-|nuORF	REV__ENST00000557552.1_1_14:105241736-105242162:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	473.2303161621094	2	473.745639	945.476725	0.3214	0.00015226	-0.24386	-0.00011553	0.077545	3.6736E-05	473.74548976943254	25.752	0.57242	25.624	25.182	25.755	-0.12795					15	10	2	0	0	0	0.28533	1	9256	9256		20.454	0	1	34753000	+		8547	12350	4760	4798	8279	8279					0.0018058679256682808
EEQKLILTP	9	Unmodified	_EEQKLILTP_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2539672851562	2	535.808239	1069.60193	0.49663	0.0002661	0.019683	1.0546E-05	0.51631	0.00027664	536.3097480351856	42.213	0.52036	41.909	41.572	42.092	-0.30352					17	9	2	0	0	0	0.10244	1	15751	15751		57.722	15.766	1	4331400			8548	1004	4761	4799	8280	8280					0.06990878928968414
EEQKLILTP	9	Unmodified	_EEQKLILTP_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MULTI-MSMS	HCT116MG_D190212_S4	4	535.8084106445312	2	535.808239	1069.60193	0.4469	0.00023945	-0.7741	-0.00041477	-0.3272	-0.00017531	535.80795405137	42.249	0.36279	41.873	41.684	42.046	-0.37565					9	6	2	0	0	0	0.37539	1	15572	15572		24.021	1.2843	1	1579100			8549	1004	4761	4799	8281	8281					0.06990878928968414
EEQKLLKD	8	Unmodified	_EEQKLLKD_					0	0	0			REV__BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant	REV__BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	501.77716064453125	2	501.776939	1001.53933	0.55588	0.00027893	-0.58438	-0.00029323	-0.028497	-1.4299E-05	501.77678898105717	29.463	0.31284	29.227	29.031	29.344	-0.23655					14	5	3	0	0	0	0.26254	1	10703	10703		62.573	0	1	9058100	+		8550	10032	4762	4800	8282	8282					0.03861732860775646
EEQKLLKD	8	Unmodified	_EEQKLLKD_					0	0	0			REV__BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant	REV__BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	501.2436218261719	2	501.776939	1001.53933	0.55588	0.00027893	-0.58438	-0.00029323	-0.028497	-1.4299E-05	501.77678898105717	29.463	0.31284	29.227	29.031	29.344	-0.23655					14	5	3	0	0	0	0.19279	1	10694	10694		62.573	0	1	9058100	+		8551	10032	4762	4800	8283	8283					0.03861732860775646
EEQKSKHEH	9	Unmodified	_EEQKSKHEH_					0	0	0			REV__ENST00000357604.9_1_10:12039676-12039742:-|nuORF	REV__ENST00000357604.9_1_10:12039676-12039742:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	384.5190124511719	3	384.51951	1150.5367	-0.10708	-4.1173E-05	-0.32614	-0.00012541	-0.43322	-0.00016658	384.51928033442556	21.267	0.25838	20.884	20.755	21.013	-0.38288					7	4	2	0	0	0	0.47413	1	7495	7495		18.373	0.93045	1	20721000	+		8552	15055	4763	4801	8284	8284					-0.032547225441931005
EEQKTSLVA	9	Unmodified	_EEQKTSLVA_					0	0	0		WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant;ENSG00000165392|ENST00000298139|WRN	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	502.7666320800781	2	502.766571	1003.51859	0.67403	0.00033888	-0.41819	-0.00021025	0.25584	0.00012863	502.766365768719	26.036	0.26006	25.667	25.498	25.758	-0.36914					6	4	2	0	0	0	0.16306	1	9417	9417		45.7	18.071	1	9284300			8553	4771	4764	4802	8285	8285					0.016971424811004
EEQKTSLVA	9	Unmodified	_EEQKTSLVA_					0	0	0		WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant;ENSG00000165392|ENST00000298139|WRN	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7668762207031	2	502.766571	1003.51859	0.50328	0.00025303	0.22004	0.00011063	0.72331	0.00036366	502.7666060125419	25.641	0.31219	25.514	25.338	25.65	-0.12795					11	5	3	0	0	0	0.10244	1	9170	9170		57.722	19.546	1	7710500			8554	4771	4764	4802	8286	8286					0.016971424811004
EEQKTSLVA	9	Unmodified	_EEQKTSLVA_					0	0	0		WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant;ENSG00000165392|ENST00000298139|WRN	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	502.766571	1003.51859	0.36091	0.00018145	-0.14089	-7.0834E-05	0.22002	0.00011062	502.7665987875531	25.849	0.26023	25.559	25.412	25.672	-0.29023	-0.021014	6.1126E-05	NaN	57.722	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2954000			8555	4771	4764	4802							0.016971424811004
EEQLKKETA	9	Unmodified	_EEQLKKETA_					0	0	0		ENSG00000029725|ENST00000537505|RABEP1	ENSG00000029725|ENST00000537505|RABEP1	ENSG00000029725|ENST00000537505|RABEP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.2982177734375	2	538.285128	1074.5557	0.44186	0.00023785	0.41797	0.00022499	0.85984	0.00046284	538.2855565488437	16.52	0.26026	16.178	16.048	16.308	-0.34183					6	4	2	0	0	0	0.062755	1	5550	5550		103.82	41.251	1	2413200			8556	964	4765	4803	8287	8287					0.0214081402687043
EEQLLRAVPP	10	Unmodified	_EEQLLRAVPP_					0	0	0			REV__ENSG00000133124|ENST00000372129|IRS4	REV__ENSG00000133124|ENST00000372129|IRS4	MSMS	HCT116MG_D190212_S3	3	576.3230590820312	2	576.324588	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.851	1	34.554	34.054	35.054	-0.29707								0	0	0	0.91906	1	12843	12843		11.64	4.3511	1		+		8557	12020	4766	4804	8288	8288					0.06533086051808823
EEQLRKEQA	9	Unmodified	_EEQLRKEQA_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	HCT116MG_D190212_S2	2	565.7938842773438	2	565.793652	1129.57275	0.42348	0.0002396	0.17003	9.62E-05	0.5935	0.0003358	565.793566958566	16.624	0.31226	16.282	16.152	16.464	-0.34183					10	5	3	0	0	0	0.0037246	1	5607	5607		154.75	33.407	1	16260000			8558	6300	4767	4805	8289	8289					0.013147346326604747
EEQLVSFGESH	11	Unmodified	_EEQLVSFGESH_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MSMS	HCT116MG_D190212_S3	3	631.287109375	2	631.288399	1260.56225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.029	1	37.727	37.227	38.227	-0.30137								0	0	0	0.94538	1	14073	14073		8.7454	1.4562	1		+		8559	12449	4768	4806	8290	8290					-0.05761292812417196
EEQPISVNA	9	Unmodified	_EEQPISVNA_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80776237-80776996:-|nuORF;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ARHGAP21|p.I1365Rfs*23|1|0.25|ENSG00000107863|chr10:24591280-24591281|TA/-|frameshift_variant;ARHGAP21|p.K1443*|1|0.33|ENSG00000107863|chr10:24585962-24585963|-/A|frameshift_variant;ARHGAP21|p.D1617Tfs*32|1|0.1|ENSG00000107863|chr10:24585440-24585440|C/-|frameshift_variant	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	HCT116MG_D190212_S3	3	493.74334716796875	2	493.743096	985.47164	0.12596	6.2191E-05	0.023145	1.1428E-05	0.1491	7.3618E-05	493.7431649200971	32.253	0.57275	31.975	31.838	32.41	-0.27841					17	10	3	0	0	0	0.0201	1	11837	11837		96.367	50.346	1	10382000			8560	2133	4769	4807	8291	8291					-0.02167717070051367
EEQPISVNA	9	Unmodified	_EEQPISVNA_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80776237-80776996:-|nuORF;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ARHGAP21|p.I1365Rfs*23|1|0.25|ENSG00000107863|chr10:24591280-24591281|TA/-|frameshift_variant;ARHGAP21|p.K1443*|1|0.33|ENSG00000107863|chr10:24585962-24585963|-/A|frameshift_variant;ARHGAP21|p.D1617Tfs*32|1|0.1|ENSG00000107863|chr10:24585440-24585440|C/-|frameshift_variant	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	HCT116MG_D190212_S4	4	493.7426452636719	2	493.743096	985.47164	0.16081	7.9397E-05	-0.33375	-0.00016479	-0.17295	-8.5391E-05	493.7428454998469	32.406	0.31128	32.027	31.845	32.157	-0.37924					7	5	2	0	0	0	0.061422	1	11808	11808		69.105	38.468	1	5512600			8561	2133	4769	4807	8292	8292					-0.02167717070051367
EEQPKNYQV	9	Unmodified	_EEQPKNYQV_					0	0	0		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;ENST00000526755.5_1_8:42911676-42932640:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	567.7757568359375	2	567.774928	1133.5353	0.487	0.00027651	0.81577	0.00046317	1.3028	0.00073968	567.775386982621	24.547	0.47051	24.547	24.412	24.882	0					9	8	2	0	0	0	0.21251	1	8823	8823		39.957	5.5556	1	5206700			8562	5017	4770	4808	8293	8293					-0.026123566329715686
EEQPKNYQV	9	Unmodified	_EEQPKNYQV_					0	0	0		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;ENST00000526755.5_1_8:42911676-42932640:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	MSMS	HCT116MG_D190212_S2	2	567.7753295898438	2	567.774928	1133.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.026	1	24.651	24.151	25.151	-0.37521								0	0	0	0.038113	1	8994	8994		74.929	31.071	1				8563	5017	4770	4808	8294	8294					-0.026123566329715686
EEQPKNYQV	9	Unmodified	_EEQPKNYQV_					0	0	0		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;ENST00000526755.5_1_8:42911676-42932640:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	567.7761840820312	2	567.774928	1133.5353	0.47231	0.00026817	0.41479	0.00023551	0.8871	0.00050367	567.7751342340763	24.729	0.52049	24.646	24.393	24.913	-0.083694					27	9	4	0	0	0	0.0053819	1	8772	8772		134.3	78.119	1	30658000			8564	5017	4770	4808	8295	8295					-0.026123566329715686
EEQPKNYQV	9	Unmodified	_EEQPKNYQV_					0	0	0		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;ENST00000526755.5_1_8:42911676-42932640:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.7750244140625	2	567.774928	1133.5353	0.64185	0.00036443	0.48225	0.00027381	1.1241	0.00063824	567.7751375226001	24.964	0.41599	24.692	24.545	24.961	-0.27218					16	7	3	0	0	0	0.0053819	1	8819	8819		134.3	80.463	1	16071000			8565	5017	4770	4808	8296	8296					-0.026123566329715686
EEQPPILNA	9	Unmodified	_EEQPPILNA_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7611389160156	2	505.761289	1009.50803	0.38118	0.00019279	0.18445	9.3286E-05	0.56562	0.00028607	505.7613715792176	40.083	0.8801	40.01	39.687	40.567	-0.072838					23	16	3	0	0	0	0.02327	1	15072	15072		93.166	21.244	1	14330000			8566	65	4771	4809	8297	8297					0.0036515982666287528
EEQPPILNA	9	Unmodified	_EEQPPILNA_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	505.7606201171875	2	505.761289	1009.50803	0.25319	0.00012805	-0.14827	-7.4987E-05	0.10492	5.3066E-05	505.76105514372756	40.31	0.58407	39.932	39.702	40.286	-0.37828					26	12	3	0	0	0	0.12205	1	14731	14731		53.833	19.431	1	8502200			8567	65	4771	4809	8298	8298					0.0036515982666287528
EEQPQDERKP	10	Unmodified	_EEQPQDERKP_					0	0	0		nc|ENSG00000133142|Q96EI5-2|TCEAL4;ENSG00000133142|ENST00000472484|TCEAL4	nc|ENSG00000133142|Q96EI5-2|TCEAL4	nc|ENSG00000133142|Q96EI5-2|TCEAL4	MSMS	HCT116MG_D190212_S1	1	628.2984619140625	2	628.299298	1254.58404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.494	1	15.494	14.994	15.994	0								0	0	0	0.90669	1	5151	5151		14.405	2.1647	1				8568	3232	4772	4810	8299	8299					-0.033064880638676186
EEQPQDERKP	10	Unmodified	_EEQPQDERKP_					0	0	0		nc|ENSG00000133142|Q96EI5-2|TCEAL4;ENSG00000133142|ENST00000472484|TCEAL4	nc|ENSG00000133142|Q96EI5-2|TCEAL4	nc|ENSG00000133142|Q96EI5-2|TCEAL4	MULTI-MSMS	HCT116MG_D190212_S2	2	628.2989501953125	2	628.299298	1254.58404	0.38212	0.00024008	0.10021	6.2963E-05	0.48233	0.00030305	628.2988646898236	15.657	0.31245	15.327	15.12	15.432	-0.33057					10	5	3	0	0	0	0.023242	1	5220	5220		114.5	60.664	1	3503500			8569	3232	4772	4810	8300	8300					-0.033064880638676186
EEQPRFQSA	9	Unmodified	_EEQPRFQSA_					0	0	0		nc|ENSG00000125952|P61244-5|MAX;nc|ENSG00000125952|P61244-6|MAX;ENST00000556702.1_1_14:65560332-65569057:-|nuORF;nc|ENSG00000125952|P61244-3|MAX;ENST00000557277.5_2_14:65544132-65569310:-|nuORF;nc|ENSG00000125952|P61244-4|MAX;MAX|p.L111Tfs*35|1|0.02|ENSG00000125952|chr14:65076629-65076630|-/C|frameshift_variant;ENST00000553951.1_1_14:65544523-65568380:-|nuORF;ENSG00000125952|ENST00000358664|MAX	nc|ENSG00000125952|P61244-5|MAX	nc|ENSG00000125952|P61244-5|MAX	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2600708007812	2	546.259445	1090.50434	0.5521	0.00030159	-0.079351	-4.3346E-05	0.47275	0.00025824	546.2595333151322	25.153	0.62469	24.777	24.504	25.129	-0.37521					23	11	3	0	0	0	0.0064416	1	9018	9018		125.04	55.933	1	24477000			8570	9446	4773	4811	8301	8301					-0.037295099471975846
EEQPRFQSA	9	Unmodified	_EEQPRFQSA_					0	0	0		nc|ENSG00000125952|P61244-5|MAX;nc|ENSG00000125952|P61244-6|MAX;ENST00000556702.1_1_14:65560332-65569057:-|nuORF;nc|ENSG00000125952|P61244-3|MAX;ENST00000557277.5_2_14:65544132-65569310:-|nuORF;nc|ENSG00000125952|P61244-4|MAX;MAX|p.L111Tfs*35|1|0.02|ENSG00000125952|chr14:65076629-65076630|-/C|frameshift_variant;ENST00000553951.1_1_14:65544523-65568380:-|nuORF;ENSG00000125952|ENST00000358664|MAX	nc|ENSG00000125952|P61244-5|MAX	nc|ENSG00000125952|P61244-5|MAX	MULTI-MSMS	HCT116MG_D190212_S3	3	546.2597045898438	2	546.259445	1090.50434	0.51638	0.00028208	-0.25571	-0.00013968	0.26067	0.00014239	546.2594089638762	24.876	0.83324	24.792	24.497	25.33	-0.083694					32	15	3	0	0	0	0.0055242	1	8812	8812		133.05	54.324	1	21309000			8571	9446	4773	4811	8302	8302					-0.037295099471975846
EEQPRFQSA	9	Unmodified	_EEQPRFQSA_					0	0	0		nc|ENSG00000125952|P61244-5|MAX;nc|ENSG00000125952|P61244-6|MAX;ENST00000556702.1_1_14:65560332-65569057:-|nuORF;nc|ENSG00000125952|P61244-3|MAX;ENST00000557277.5_2_14:65544132-65569310:-|nuORF;nc|ENSG00000125952|P61244-4|MAX;MAX|p.L111Tfs*35|1|0.02|ENSG00000125952|chr14:65076629-65076630|-/C|frameshift_variant;ENST00000553951.1_1_14:65544523-65568380:-|nuORF;ENSG00000125952|ENST00000358664|MAX	nc|ENSG00000125952|P61244-5|MAX	nc|ENSG00000125952|P61244-5|MAX	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2593383789062	2	546.259445	1090.50434	0.68853	0.00037612	-0.86145	-0.00047058	-0.17292	-9.4461E-05	546.2592596941668	25.071	0.62412	24.792	24.538	25.162	-0.27958					25	11	3	0	0	0	0.0055242	1	8848	8848		133.05	57.291	1	7007500			8572	9446	4773	4811	8303	8303					-0.037295099471975846
EEQPSNQTV	9	Unmodified	_EEQPSNQTV_					0	0	0		nc|ENSG00000197442|Q99683-2|MAP3K5;ENSG00000197442|ENST00000359015|MAP3K5	nc|ENSG00000197442|Q99683-2|MAP3K5	nc|ENSG00000197442|Q99683-2|MAP3K5	MULTI-MSMS	HCT116MG_D190212_S3	3	516.2354736328125	2	516.235635	1030.45672	0.12442	6.4229E-05	0.61033	0.00031508	0.73475	0.0003793	516.2356815822523	20.361	0.41651	20.409	20.207	20.624	0.048109					16	7	3	0	0	0	0.01405	1	7044	7044		103.35	55.605	1	5082500			8573	6145	4774	4812	8304	8304					-0.05729208938055308
EEQPSNQTV	9	Unmodified	_EEQPSNQTV_					0	0	0		nc|ENSG00000197442|Q99683-2|MAP3K5;ENSG00000197442|ENST00000359015|MAP3K5	nc|ENSG00000197442|Q99683-2|MAP3K5	nc|ENSG00000197442|Q99683-2|MAP3K5	MULTI-MSMS	HCT116MG_D190212_S4	4	516.2360229492188	2	516.235635	1030.45672	0.28227	0.00014572	0.54151	0.00027955	0.82378	0.00042527	516.2358511824649	20.573	0.31186	20.372	20.248	20.56	-0.20133					6	5	2	0	0	0	0.12994	1	7068	7068		52.268	22.428	1	2306200			8574	6145	4774	4812	8305	8305					-0.05729208938055308
EEQPTSISP	9	Unmodified	_EEQPTSISP_					0	0	0		nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000437893.5_3_2:238428630-238443211:+|nuORF;ENST00000485956.1_1_2:238428630-238446180:+|nuORF	nc|ENSG00000115648|Q9BV36-3|MLPH	nc|ENSG00000115648|Q9BV36-3|MLPH	MULTI-MSMS	HCT116MG_D190212_S3	3	494.73675537109375	2	494.235104	986.455655	0.36907	0.00018241	0.20927	0.00010343	0.57834	0.00028583	494.23513989352796	29.437	0.67723	29.204	28.775	29.452	-0.23281					20	12	2	0	0	0	0.077982	1	10674	10674		62.573	16.552	1	8501000			8575	2477	4775	4813	8306	8306					-0.03811423306933648
EEQPTSISP	9	Unmodified	_EEQPTSISP_					0	0	0		nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000437893.5_3_2:238428630-238443211:+|nuORF;ENST00000485956.1_1_2:238428630-238446180:+|nuORF	nc|ENSG00000115648|Q9BV36-3|MLPH	nc|ENSG00000115648|Q9BV36-3|MLPH	MULTI-MSMS	HCT116MG_D190212_S3	3	987.46484375	1	987.462932	986.455655	0.88806	0.00087692	-0.049588	-4.8966E-05	0.83847	0.00082796	987.4627018950994	29.416	0.62527	29.189	28.885	29.51	-0.22692					18	11	2	0	0	0	0.047849	1	10690	10690		75.761	0.83183	1	6412000			8576	2477	4775	4813	8307	8307					-0.03811423306933648
EEQPTSISP	9	Unmodified	_EEQPTSISP_					0	0	0		nc|ENSG00000115648|Q9BV36-3|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000437893.5_3_2:238428630-238443211:+|nuORF;ENST00000485956.1_1_2:238428630-238446180:+|nuORF	nc|ENSG00000115648|Q9BV36-3|MLPH	nc|ENSG00000115648|Q9BV36-3|MLPH	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	987.462932	986.455655	0.5712	0.00056403	0.079063	7.8072E-05	0.65026	0.00064211	987.4627047440491	29.495	0.51991	29.146	28.929	29.449	-0.34921	-0.021553	9.4855E-05	NaN	75.761	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2136700			8577	2477	4775	4813							-0.03811423306933648
EEQPTTKQA	9	Unmodified	_EEQPTTKQA_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2540283203125	2	516.253828	1030.4931	0.10428	5.3837E-05	0.50772	0.00026211	0.612	0.00031595	516.2540051797075	14.974	0.46908	14.652	14.503	14.972	-0.32217					13	8	3	0	0	0	0.0050238	1	4938	4938		137.42	65.502	1	7317700			8578	2175	4776	4814	8308	8308					-0.020923320413203328
EEQPVFRLV	9	Unmodified	_EEQPVFRLV_					0	0	0		ENSG00000166788|ENST00000524803|SAAL1	ENSG00000166788|ENST00000524803|SAAL1	ENSG00000166788|ENST00000524803|SAAL1	MULTI-MSMS	HCT116MG_D190212_S2	2	558.8054809570312	2	558.806031	1115.59751	0.47372	0.00026472	-0.22435	-0.00012537	0.24937	0.00013935	558.8059521632341	51.808	0.35888	51.624	51.373	51.732	-0.18369					11	6	2	0	0	0	0.069315	1	19906	19906		65.235	65.235	1	19690000			8579	4878	4777	4815	8309	8309					0.04433414506047484
EEQPVFRLV	9	Unmodified	_EEQPVFRLV_					0	0	0		ENSG00000166788|ENST00000524803|SAAL1	ENSG00000166788|ENST00000524803|SAAL1	ENSG00000166788|ENST00000524803|SAAL1	MSMS	HCT116MG_D190212_S3	3	558.8064575195312	2	558.806031	1115.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.141	1	51.832	51.332	52.332	-0.30927								0	0	0	0.76718	1	19704	19704		10.824	0	1				8580	4878	4777	4815	8310	8310					0.04433414506047484
EEQQKQYKV	9	Unmodified	_EEQQKQYKV_					0	0	0		ENST00000531368.1_1_17:42286674-42287095:-|nuORF;nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	ENST00000531368.1_1_17:42286674-42287095:-|nuORF	ENST00000531368.1_1_17:42286674-42287095:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	590.3041381835938	2	590.303852	1178.59315	0.49827	0.00029413	0.070785	4.1784E-05	0.56905	0.00033591	590.3039236606908	20.194	0.20804	19.816	19.659	19.867	-0.37739					8	3	3	0	0	0	0.0080275	1	7062	7062		140.63	74.176	1	10750000			8581	2154	4778	4816	8311	8311					0.010999052924717034
EEQQKSHP	8	Unmodified	_EEQQKSHP_					0	0	0		KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant;KMT2C|p.K1164Rfs*17|1|0.4|ENSG00000055609|chr7:152222008-152222009|TT/-|frameshift_variant;KMT2C|p.K1247Nfs*56|1|0.22|ENSG00000055609|chr7:152207400-152207400|T/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	491.73321533203125	2	491.733063	981.451573	0.42556	0.00020926	-0.11165	-5.49E-05	0.31392	0.00015436	491.73295777306566	20.357	0.20847	20.357	20.227	20.435	0					7	3	3	0	0	0	0.43493	1	7124	7124		46.921	0.89992	1	5788800			8582	1080	4779	4817	8312	8312					-0.0398946800999056
EEQQPATTTA	10	Unmodified	_EEQQPATTTA_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1;SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2489013671875	2	538.248743	1074.48293	0.24104	0.00012974	0.34274	0.00018448	0.58377	0.00031421	538.2488786353293	17.168	0.4685	17.252	17.016	17.485	0.084467					22	8	4	0	0	0	0.17574	1	5733	5733		61.602	12.075	1	7282900			8583	2937	4780	4818	8313	8313					-0.05132939766576783
EEQQPATTTA	10	Unmodified	_EEQQPATTTA_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1;SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	HCT116MG_D190212_S3	3	1075.4910888671875	1	1075.49021	1074.48293	0.23586	0.00025367	-0.17281	-0.00018585	0.063055	6.7815E-05	1075.4904862713993	17.114	0.36427	17.199	17.068	17.433	0.084467					10	6	2	0	0	0	0.066546	1	5761	5761		80.676	40.726	1	1469100			8584	2937	4780	4818	8314	8314					-0.05132939766576783
EEQQPATTTA	10	Unmodified	_EEQQPATTTA_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1;SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	538.248743	1074.48293	0.48094	0.00025887	0.31691	0.00017058	0.79785	0.00042944	538.2488002054099	17.578	0.2612	17.227	17.028	17.289	-0.35151	0.029955	5.8034E-06	NaN	61.602	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4932000			8585	2937	4780	4818							-0.05132939766576783
EEQQPATTTA	10	Unmodified	_EEQQPATTTA_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1;SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	538.248743	1074.48293	0.059678	3.2122E-05	0.1958	0.00010539	0.25548	0.00013751	538.2488356138379	17.282	0.41327	17.111	16.915	17.329	-0.17047	-0.085339	-0.00012457	NaN	61.602	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2450300			8586	2937	4780	4818							-0.05132939766576783
EEQQPGKEGP	10	Unmodified	_EEQQPGKEGP_					0	0	0		nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	MULTI-MSMS	HCT116MG_D190212_S2	2	549.7568969726562	2	549.756735	1097.49892	0.39437	0.00021681	-0.286	-0.00015723	0.10837	5.9576E-05	549.7563108568718	16.689	0.41657	16.347	16.048	16.464	-0.34183					18	7	3	0	0	0	0.01091	1	5645	5645		143.91	78.674	1	4055400			8587	4687	4781	4819	8315	8315					-0.04593233529635654
EEQQPGKEGP	10	Unmodified	_EEQQPGKEGP_					0	0	0		nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	MSMS	HCT116MG_D190212_S3	3	550.2177124023438	2	549.756735	1097.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.722	1	15.807	15.307	16.307	0.085423								0	0	0	0.84701	1	5165	5165		22.736	9.6938	1				8588	4687	4781	4819	8316	8316					-0.04593233529635654
EEQQPGKEGP	10	Unmodified	_EEQQPGKEGP_					0	0	0		nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	MSMS	HCT116MG_D190212_S3	3	549.7664184570312	2	549.756735	1097.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.887	1	15.973	15.473	16.473	0.085423								0	0	0	0.87399	1	5232	5232		19.257	9.8739	1				8589	4687	4781	4819	8317	8317					-0.04593233529635654
EEQQQRHWVA	10	Unmodified	_EEQQQRHWVA_					0	0	0		IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1	IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	655.8162841796875	2	655.81545	1309.61635	0.42664	0.00027979	-0.21155	-0.00013874	0.21509	0.00014106	655.8154461110053	25.634	0.20766	25.265	25.135	25.343	-0.36914					6	3	2	0	0	0	0.065434	1	9253	9253		93.166	65.537	1	18005000			8590	5143	4782	4820	8318	8318					-0.026076558702015973
EEQQQRHWVA	10	Unmodified	_EEQQQRHWVA_					0	0	0		IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1	IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	437.54595947265625	3	437.546059	1309.61635	0.27072	0.00011845	-0.19693	-8.6165E-05	0.073788	3.2286E-05	437.5459020485812	25.128	0.26101	25.022	24.891	25.152	-0.10618					8	4	2	0	0	0	0.70908	1	8984	8984		19.626	9.8617	1	6170100			8591	5143	4782	4820	8319	8319					-0.026076558702015973
EEQQQRHWVA	10	Unmodified	_EEQQQRHWVA_					0	0	0		IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant;ENSG00000170604|ENST00000302165|IRF2BP1	IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	655.81545	1309.61635	0.71971	0.000472	0.89629	0.0005878	1.616	0.0010598	655.8161206819768	25.52	0.26007	25.24	25.006	25.266	-0.27958	0.06453	0.000642	NaN	93.166	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3227700			8592	5143	4782	4820							-0.026076558702015973
EEQQRLLEA	9	Unmodified	_EEQQRLLEA_					0	0	0		nc|ENSG00000128829|Q9P2K8-3|EIF2AK4;EIF2AK4|p.L856Wfs*7|1|0.47|ENSG00000128829|chr15:39990307-39990307|T/-|frameshift_variant;EIF2AK4|p.P1003Hfs*17|1|0.32|ENSG00000128829|chr15:40001069-40001069|C/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.R192Gfs*43|1|0.34|ENSG00000128829|chr15:39953958-39953958|A/-|frameshift_variant;EIF2AK4|p.M321Wfs*31|1|0.14|ENSG00000128829|chr15:39965781-39965781|A/-|frameshift_variant;EIF2AK4|p.E436Kfs*67|1|0.08|ENSG00000128829|chr15:39967632-39967632|G/-|frameshift_variant	nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	MULTI-MSMS	HCT116MG_D190212_S3	3	558.2884521484375	2	558.288202	1114.56185	0.65252	0.00036429	-0.22434	-0.00012525	0.42818	0.00023905	558.2879773617492	32.819	0.20853	32.534	32.404	32.612	-0.28511					5	3	2	0	0	0	0.0201	1	12073	12073		96.367	38.645	1	3947100			8593	768	4783	4821	8320	8320					0.00915332258387025
EEQRAIAKI	9	Unmodified	_EEQRAIAKI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000532383.5_1_11:10825358-10825926:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-SECPEP	HCT116MG_D190212_S1	1	529.7451782226562	2	529.303655	1056.59276	0.42338	0.0002241	0.35083	0.0001857	0.77421	0.00040979	529.8057175809358	26.267	0.20868	26.267	26.136	26.345	0					5	3	2	0	0	0	0.11907	1	9478	9478		53.404	15.228	1	3130500			8594	2243	4784	4822	8321	8321					0.0667253036326656
EEQRAIAKI	9	Unmodified	_EEQRAIAKI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000532383.5_1_11:10825358-10825926:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S2	2	529.3033447265625	2	529.303655	1056.59276	0.35558	0.00018821	-0.16474	-8.7198E-05	0.19084	0.00010101	529.3034742835983	26.682	0.3128	26.322	26.13	26.442	-0.35976					11	5	3	0	0	0	0.014023	1	9668	9668		103.42	27.659	1	14651000			8595	2243	4784	4822	8322	8322					0.0667253036326656
EEQRIQSLM	9	Unmodified	_EEQRIQSLM_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93;ENST00000460781.1_1_2:118709253-118753033:-|nuORF	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	HCT116MG_D190212_S4	4	567.2850341796875	2	567.284605	1132.55466	0.47538	0.00026968	-0.1716	-9.7348E-05	0.30378	0.00017233	567.284599728666	21.295	0.46766	21.086	20.863	21.331	-0.20959					10	4	3	0	0	0	0.082877	1	7349	7349		61.602	7.7691	1	11706000			8596	2895	4785	4823	8323	8323					-0.006317236136965221
EEQRPERVKP	10	Unmodified	_EEQRPERVKP_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S1	1	423.2299499511719	3	423.229959	1266.66805	-0.03311	-1.4013E-05	0.033233	1.4065E-05	0.00012353	5.2281E-08	423.22995738708863	16.222	0.52071	16.222	15.848	16.369	0					32	9	5	0	0	0	0.12834	1	5375	5375		68.484	52.945	1	30385000			8597	3226	4786	4824	8324	8324					0.045380878236983335
EEQRPERVKP	10	Unmodified	_EEQRPERVKP_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S1	1	634.341796875	2	634.341301	1266.66805	0.66629	0.00042265	-0.16554	-0.00010501	0.50074	0.00031764	634.3411872168126	16.212	0.52071	16.212	15.848	16.369	0					28	9	5	0	0	0	0.11595	1	5381	5381		70.929	56.523	1	25302000			8598	3226	4786	4824	8325	8325					0.045380878236983335
EEQRPERVKP	10	Unmodified	_EEQRPERVKP_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	634.341552734375	2	634.341301	1266.66805	0.47351	0.00030036	-0.047041	-2.984E-05	0.42646	0.00027052	634.3413384733996	16.735	1.1464	16.393	15.839	16.985	-0.34183					66	21	5	0	0	0	0.089898	2	5513	5513;5762		94.909	65.068	1	350550000			8599	3226	4786	4824	8326;8327	8326					0.045380878236983335
EEQRPERVKP	10	Unmodified	_EEQRPERVKP_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	423.2298278808594	3	423.229959	1266.66805	0.088549	3.7477E-05	-0.057745	-2.4439E-05	0.030804	1.3037E-05	423.2299700778067	16.772	1.0419	16.43	15.839	16.881	-0.34183					57	19	5	0	0	0	0.048151	2	5529	5529;5759		88.576	59.294	1	212060000			8600	3226	4786	4824	8328;8329	8328					0.045380878236983335
EEQRPERVKP	10	Unmodified	_EEQRPERVKP_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S3	3	423.23004150390625	3	423.229959	1266.66805	0.11648	4.9298E-05	-0.14392	-6.0909E-05	-0.027435	-1.1611E-05	423.22993781272413	15.292	1.5613	15.376	14.57	16.131	0.083271					88	29	5	0	0	0	0.027082	3	5014	4768;4785;5014		86.276	61.319	1	112230000			8601	3226	4786	4824	8330;8331;8332	8332					0.045380878236983335
EEQRPERVKP	10	Unmodified	_EEQRPERVKP_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S3	3	634.3416748046875	2	634.341301	1266.66805	0.50568	0.00032077	-0.041174	-2.6118E-05	0.4645	0.00029465	634.341297194144	15.292	1.1449	15.376	14.726	15.871	0.083271					70	21	5	0	0	0	0.45204	2	4809	4809;5035		30.703	24.498	1	92355000			8602	3226	4786	4824	8333;8334	8333					0.045380878236983335
EEQRPGGPSA	10	Unmodified	_EEQRPGGPSA_					0	0	0		RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant;nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	513.788330078125	2	514.243795	1026.47304	0.22284	0.00011459	-0.096265	-4.9504E-05	0.12657	6.509E-05	514.2438189379351	16.78	0.20848	16.438	16.308	16.516	-0.34183					5	3	2	0	0	0	0.27368	1	5680	5680		33.445	21.95	1	3596200			8603	1910	4787	4825	8335	8335					-0.03914082981259526
EEQRPGGPSA	10	Unmodified	_EEQRPGGPSA_					0	0	0		RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant;nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	514.24462890625	2	514.243795	1026.47304	0.16566	8.5192E-05	0.3891	0.00020009	0.55476	0.00028528	514.2442181811864	15.866	0.20815	15.951	15.821	16.029	0.085423					6	3	2	0	0	0	0.33238	1	5248	5248		47.594	19.1	1	2212000			8604	1910	4787	4825	8336	8336					-0.03914082981259526
EEQRVHSPP	9	Unmodified	_EEQRVHSPP_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S1	1	539.7674560546875	2	539.767437	1077.52032	0.55151	0.00029768	-0.25433	-0.00013728	0.29717	0.0001604	539.7672941357274	16.742	1.1988	16.742	16.421	17.62	0					38	22	2	0	0	0	0.10244	2	5605	5605;5844		57.722	23.32	1	4720000			8605	6174	4788	4826	8337;8338	8337					-0.015338037102765156
EEQRVHSPP	9	Unmodified	_EEQRVHSPP_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S1	1	360.1805419921875	3	360.180717	1077.52032	-0.058517	-2.1077E-05	-0.16556	-5.963E-05	-0.22407	-8.0707E-05	360.18067582082193	16.719	0.52093	16.719	16.473	16.994	0					14	9	2	0	0	0	0.51829	1	5658	5658		10.8	5.0677	1	1269000			8606	6174	4788	4826	8339	8339					-0.015338037102765156
EEQRVHSPP	9	Unmodified	_EEQRVHSPP_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7674560546875	2	539.767437	1077.52032	0.47554	0.00025668	-0.11953	-6.4521E-05	0.35601	0.00019216	539.7673649706774	17.062	1.8775	16.713	16.509	18.386	-0.34933					90	35	4	0	0	0	0.0046822	5	5776	5776;6007;6189;6245;6272		140.63	76.673	1	40567000			8607	6174	4788	4826	8340;8341;8342;8343;8344	8340					-0.015338037102765156
EEQRVHSPP	9	Unmodified	_EEQRVHSPP_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S2	2	360.1806335449219	3	360.180717	1077.52032	-0.16137	-5.8122E-05	0.12938	4.6601E-05	-0.031988	-1.1521E-05	360.1807279698631	17.304	0.9391	16.955	16.561	17.5	-0.34933					39	17	3	0	0	0	0.2853	1	5804	5804		29.841	12.398	1	7189100			8608	6174	4788	4826	8345	8345					-0.015338037102765156
EEQRVHSPP	9	Unmodified	_EEQRVHSPP_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7674560546875	2	539.767437	1077.52032	0.40105	0.00021647	-0.081327	-4.3898E-05	0.31972	0.00017258	539.7673589950173	15.806	1.5089	15.892	15.665	17.174	0.085424					68	28	3	0	0	0	0.0201	3	5183	5183;5416;5651		96.367	48.772	1	11125000			8609	6174	4788	4826	8346;8347;8348	8346					-0.015338037102765156
EEQRVHSPP	9	Unmodified	_EEQRVHSPP_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S4	4	539.7674560546875	2	539.767437	1077.52032	-0.1721	-9.2894E-05	0.46865	0.00025296	0.29655	0.00016007	539.7676512183044	16.18	1.307	16.017	15.563	16.87	-0.16364					47	25	2	0	0	0	0.22946	1	5387	5387		38.176	10.547	1	1488500			8610	6174	4788	4826	8349	8349					-0.015338037102765156
EEQRVHSPPA	10	Unmodified	_EEQRVHSPPA_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S2	2	575.2874755859375	2	575.285994	1148.55744	0.37545	0.00021599	-2.9441	-0.0016937	-2.5687	-0.0014777	575.2846663838577	17.387	0.47024	17.038	16.873	17.343	-0.34933					13	8	2	0	0	0	0.54524	1	5933	5933		32.037	2.1969	1	3809900			8611	6174	4789	4827	8350	8350					-0.010901321644951167
EEQRVHSPPA	10	Unmodified	_EEQRVHSPPA_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S3	3	575.2853393554688	2	575.285994	1148.55744	0.38781	0.0002231	0.26039	0.0001498	0.6482	0.0003729	575.2860075294661	16.178	0.41582	16.263	16.029	16.445	0.085424					10	7	2	0	0	0	0.37453	1	5367	5367		43.982	16.353	1	2285600			8612	6174	4789	4827	8351	8351					-0.010901321644951167
EEQSAGNYRNA	11	Unmodified	_EEQSAGNYRNA_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant;ENSG00000157796|ENST00000399820|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	619.7736206054688	2	619.773448	1237.53234	0.23677	0.00014675	-0.098815	-6.1243E-05	0.13796	8.5504E-05	619.773469633212	16.977	0.20826	17.061	16.964	17.173	0.084467					5	3	2	0	0	0	0.3003	1	5691	5691		63.961	32.692	1	1997000			8613	4344	4790	4828	8352	8352					-0.0769223175773277
EEQSNHAGMGP	11	Unmodified	_EEQSNHAGMGP_					0	0	0		nc|nan|Q8N812|C12orf76	nc|nan|Q8N812|C12orf76	nc|nan|Q8N812|C12orf76	MSMS	HCT116MG_D190212_S2	2	578.807373046875	2	578.738019	1155.46149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.179	1	17.823	17.323	18.323	-0.35647								0	0	0	0.91433	1	6233	6233		18.146	1.0335	1				8614	9686	4791	4829	8353	8353					-0.11002648066914844
EEQSRLIAA	9	Unmodified	_EEQSRLIAA_					0	0	0		ENSG00000157500|ENST00000288266|APPL1	ENSG00000157500|ENST00000288266|APPL1	ENSG00000157500|ENST00000288266|APPL1	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7734069824219	2	508.772188	1015.52982	0.37249	0.00018951	0.59806	0.00030428	0.97055	0.00049379	508.77261982599595	29.977	0.42586	29.741	29.5	29.926	-0.23655					18	7	4	0	0	0	0.016412	1	10918	10918		100.09	28.168	1	23448000			8615	4330	4792	4830	8354	8354					0.022679645752418764
EEQSRLIAA	9	Unmodified	_EEQSRLIAA_					0	0	0		ENSG00000157500|ENST00000288266|APPL1	ENSG00000157500|ENST00000288266|APPL1	ENSG00000157500|ENST00000288266|APPL1	MULTI-MSMS	HCT116MG_D190212_S4	4	508.7723693847656	2	508.772188	1015.52982	0.14347	7.2995E-05	0.30771	0.00015655	0.45118	0.00022955	508.772371743535	30.17	0.36402	29.813	29.545	29.909	-0.35711					12	6	2	0	0	0	0.0201	1	10935	10935		96.367	24.444	1	11635000			8616	4330	4792	4830	8355	8355					0.022679645752418764
EEQSRLIAA	9	Unmodified	_EEQSRLIAA_					0	0	0		ENSG00000157500|ENST00000288266|APPL1	ENSG00000157500|ENST00000288266|APPL1	ENSG00000157500|ENST00000288266|APPL1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	508.772188	1015.52982	0.16627	8.4595E-05	0.74216	0.00037759	0.90843	0.00046219	508.77244597675525	30.012	0.30963	29.727	29.46	29.77	-0.28453	-0.03329	0.00033384	NaN	100.09	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14055000			8617	4330	4792	4830							0.022679645752418764
EEQVISLGP	9	Unmodified	_EEQVISLGP_					0	0	0		ENST00000519690.1_1_5:149827146-149827347:-|nuORF;ENSG00000164587|ENST00000407193|RPS14	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	486.2377014160156	2	486.25584	970.497126	-0.063514	-3.0884E-05	0.24989	0.00012151	0.18638	9.0628E-05	486.25590478172984	28.993	1.2984	28.652	28.211	29.509	-0.34059					33	24	2	0	0	0	0.19218	1	10379	10379		42.095	15.753	1	5319400			8618	4704	4793	4831	8356	8356					0.010697574523987896
EEQVNNIKP	9	Unmodified	_EEQVNNIKP_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	HCT116MG_D190212_S2	2	535.7774047851562	2	535.77747	1069.54039	0.47422	0.00025407	0.20295	0.00010874	0.67717	0.00036281	535.777367139626	26.33	0.41412	25.968	25.766	26.18	-0.36164					14	7	3	0	0	0	0.030723	1	9544	9544		85.642	51.539	1	10004000			8619	3644	4794	4832	8357	8357					0.00839947229678728
EEQVNNIKP	9	Unmodified	_EEQVNNIKP_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	HCT116MG_D190212_S3	3	535.7772827148438	2	535.77747	1069.54039	0.59125	0.00031678	0.53379	0.00028599	1.125	0.00060277	535.7773237387773	26.274	0.57352	26.124	25.733	26.307	-0.14924					17	10	2	0	0	0	0.040027	1	9403	9403		79.596	47.291	1	8889500			8620	3644	4794	4832	8358	8358					0.00839947229678728
EEQVNNIKP	9	Unmodified	_EEQVNNIKP_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	HCT116MG_D190212_S4	4	535.7775268554688	2	535.77747	1069.54039	0.35607	0.00019077	0.32848	0.00017599	0.68455	0.00036677	535.7772760450995	26.391	0.5724	26.09	25.713	26.286	-0.30087					16	10	2	0	0	0	0.14171	1	9407	9407		49.933	28.186	1	3463600			8621	3644	4794	4832	8359	8359					0.00839947229678728
EEQVQASTP	9	Unmodified	_EEQVQASTP_					0	0	0		ENSG00000261236|ENST00000569669|BOP1;ENST00000529231.1_8:145488904-145515052:-|nuORF	ENSG00000261236|ENST00000569669|BOP1	ENSG00000261236|ENST00000569669|BOP1	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7328796386719	2	494.732729	987.450904	0.44361	0.00021947	0.1818	8.9942E-05	0.6254	0.00030941	494.73259865989183	22.497	0.41504	22.111	21.947	22.362	-0.38521					11	7	2	0	0	0	0.077982	1	7990	7990		62.573	38.552	1	10448000			8622	6629	4795	4833	8360	8360					-0.04332307449703876
EEQVQASTP	9	Unmodified	_EEQVQASTP_					0	0	0		ENSG00000261236|ENST00000569669|BOP1;ENST00000529231.1_8:145488904-145515052:-|nuORF	ENSG00000261236|ENST00000569669|BOP1	ENSG00000261236|ENST00000569669|BOP1	MULTI-MSMS	HCT116MG_D190212_S3	3	494.7323913574219	2	494.732729	987.450904	0.23673	0.00011712	0.15945	7.8886E-05	0.39618	0.00019601	494.73263943543776	22.307	0.52099	22.308	21.99	22.511	0.00074577					21	9	3	0	0	0	0.077982	1	7768	7768		62.573	33.491	1	12332000			8623	6629	4795	4833	8361	8361					-0.04332307449703876
EEQVQASTP	9	Unmodified	_EEQVQASTP_					0	0	0		ENSG00000261236|ENST00000569669|BOP1;ENST00000529231.1_8:145488904-145515052:-|nuORF	ENSG00000261236|ENST00000569669|BOP1	ENSG00000261236|ENST00000569669|BOP1	MULTI-MSMS	HCT116MG_D190212_S3	3	988.4589233398438	1	988.458181	987.450904	0.70606	0.00069791	0.53077	0.00052464	1.2368	0.0012225	988.4586701447425	22.276	0.26058	22.276	22.146	22.407	0.00074577					7	4	2	0	0	0	0.035349	1	7842	7842		81.89	16.655	1	2126500			8624	6629	4795	4833	8362	8362					-0.04332307449703876
EEQVQASTP	9	Unmodified	_EEQVQASTP_					0	0	0		ENSG00000261236|ENST00000569669|BOP1;ENST00000529231.1_8:145488904-145515052:-|nuORF	ENSG00000261236|ENST00000569669|BOP1	ENSG00000261236|ENST00000569669|BOP1	MULTI-MSMS	HCT116MG_D190212_S4	4	494.7329406738281	2	494.732729	987.450904	0.27316	0.00013514	0.17662	8.7381E-05	0.44978	0.00022252	494.73274382878884	22.431	0.41547	22.203	21.988	22.403	-0.22777					17	7	3	0	0	0	0.090581	1	7772	7772		60.074	29.437	1	5492400			8625	6629	4795	4833	8363	8363					-0.04332307449703876
EEQVRSLEA	9	Unmodified	_EEQVRSLEA_					0	0	0		ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	MULTI-MSMS	HCT116MG_D190212_S1	1	530.76708984375	2	530.767103	1059.51965	0.27069	0.00014367	-0.12367	-6.564E-05	0.14702	7.8032E-05	530.7672087299427	26.892	0.20865	26.892	26.761	26.97	0					5	3	2	0	0	0	0.033064	1	9747	9747		100.09	34.856	1	11187000			8626	1541	4796	4834	8364	8364					-0.007726431500032049
EEQVRSLEA	9	Unmodified	_EEQVRSLEA_					0	0	0		ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	MULTI-MSMS	HCT116MG_D190212_S2	2	530.767333984375	2	530.767103	1059.51965	0.67933	0.00036056	0.3421	0.00018157	1.0214	0.00054214	530.7670921020492	27.305	0.41435	26.953	26.766	27.18	-0.35254					17	7	3	0	0	0	0.024226	1	9916	9916		110.55	45.318	1	46126000			8627	1541	4796	4834	8365	8365					-0.007726431500032049
EEQVRSLEA	9	Unmodified	_EEQVRSLEA_					0	0	0		ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	MULTI-MSMS	HCT116MG_D190212_S3	3	530.7674560546875	2	530.767103	1059.51965	0.48737	0.00025868	0.060708	3.2222E-05	0.54808	0.0002909	530.7670736579655	27.159	0.41664	26.99	26.807	27.224	-0.16933					19	7	4	0	0	0	0.013243	1	9776	9776		125.04	59.803	1	62334000			8628	1541	4796	4834	8366	8366					-0.007726431500032049
EEQVRSLEA	9	Unmodified	_EEQVRSLEA_					0	0	0		ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	ENSG00000090447|ENST00000204517|TFAP4	MULTI-MSMS	HCT116MG_D190212_S4	4	530.7676391601562	2	530.767103	1059.51965	0.52707	0.00027975	0.14933	7.9257E-05	0.6764	0.00035901	530.7671734518389	27.34	0.50963	27.028	26.899	27.408	-0.3114					18	9	3	0	0	0	0.0093047	1	9788	9788		136.39	64.47	1	15885000			8629	1541	4796	4834	8367	8367					-0.007726431500032049
EEQVTKAEA	9	Unmodified	_EEQVTKAEA_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	HCT116MG_D190212_S2	2	502.748291015625	2	502.748379	1003.4822	0.22865	0.00011495	-0.11456	-5.7593E-05	0.11409	5.7361E-05	502.7481569469972	18.188	0.52227	17.832	17.65	18.172	-0.35647					16	9	2	0	0	0	0.011034	1	6241	6241		110.79	28.263	1	20213000			8630	5875	4797	4835	8368	8368					-0.019397344156232066
EEQVTKAEA	9	Unmodified	_EEQVTKAEA_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7481384277344	2	502.748379	1003.4822	0.10089	5.0721E-05	0.010435	5.2461E-06	0.11132	5.5967E-05	502.74808599695325	17.336	0.52025	17.418	17.273	17.794	0.081356					21	9	3	0	0	0	0.0081783	1	5830	5830		117.84	44.87	1	10921000			8631	5875	4797	4835	8369	8369					-0.019397344156232066
EEQVTKAEA	9	Unmodified	_EEQVTKAEA_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	HCT116MG_D190212_S4	4	502.7490539550781	2	502.748379	1003.4822	0.046602	2.3429E-05	0.51721	0.00026003	0.56381	0.00028345	502.748599886959	17.611	0.4154	17.441	17.329	17.744	-0.17047					11	7	2	0	0	0	0.071914	1	5862	5862		63.961	7.7835	1	3227300			8632	5875	4797	4835	8370	8370					-0.019397344156232066
EEQVTKAEA	9	Unmodified	_EEQVTKAEA_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MATCH	HCT116MG_D190212_S1	1		2	502.748379	1003.4822	0.5573	0.00028018	0.19983	0.00010046	0.75713	0.00038065	502.7484641387643	17.733	0.15635	17.733	17.62	17.776	0	0.12685	0.00010951	NaN	117.84	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1915800			8633	5875	4797	4835							-0.019397344156232066
EEQYSKLVQA	10	Unmodified	_EEQYSKLVQA_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MSMS	HCT116MG_D190212_S1	1	597.8043823242188	2	597.803685	1193.59282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.132	1	33.132	32.632	33.632	0								0	0	0	0.20883	1	12250	12250		67.838	27.881	1				8634	1810	4798	4836	8371	8371					0.003764855726103633
EEQYSKLVQA	10	Unmodified	_EEQYSKLVQA_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	HCT116MG_D190212_S2	2	598.3060913085938	2	597.803685	1193.59282	0.96883	0.00057917	-0.051316	-3.0677E-05	0.91752	0.0005485	597.803469891379	33.234	0.20818	33.04	32.913	33.121	-0.19434					9	3	3	0	0	0	0.0052575	1	12333	12333		166.77	120.75	1	41102000			8635	1810	4798	4836	8372	8372					0.003764855726103633
EEQYSKLVQA	10	Unmodified	_EEQYSKLVQA_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	HCT116MG_D190212_S3	3	597.8038940429688	2	597.803685	1193.59282	0.66008	0.0003946	-0.12318	-7.364E-05	0.53689	0.00032096	597.8035267173755	33.447	0.24047	33.157	33.011	33.252	-0.29013					11	4	3	0	0	0	0.0040532	1	12269	12269		169.92	122.17	1	11596000			8636	1810	4798	4836	8373	8373					0.003764855726103633
EEQYSKLVQA	10	Unmodified	_EEQYSKLVQA_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	597.803685	1193.59282	1.4042	0.00083945	-0.55642	-0.00033263	0.8478	0.00050682	598.3049118262901	33.519	0.21954	33.136	32.996	33.216	-0.38366	0.025097	-0.00033419	NaN	169.92	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3261500			8637	1810	4798	4836							0.003764855726103633
EERADLIAY	9	Unmodified	_EERADLIAY_					0	0	0		ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	MULTI-MSMS	HCT116MG_D190212_S1	1	540.2721557617188	2	540.272021	1078.52949	0.29864	0.00016135	0.31667	0.00017109	0.61531	0.00033244	540.2720842371743	39.579	0.46691	39.579	39.346	39.813	0					22	8	4	0	0	0	0.011082	1	14853	14853		110.67	54.498	1	163490000		+	8638	5235	4799	4837	8374	8374					-0.006634551446268233
EERADLIAY	9	Unmodified	_EERADLIAY_					0	0	0		ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	MULTI-MSMS	HCT116MG_D190212_S1	1	1079.539306640625	1	1079.53677	1078.52949	0.44007	0.00047507	0.17918	0.00019343	0.61925	0.0006685	1079.5371747355252	39.579	0.20852	39.579	39.449	39.657	0					6	3	2	0	0	0	0.0034607	1	14863	14863		163.04	70.545	1	24760000		+	8639	5235	4799	4837	8375	8375					-0.006634551446268233
EERADLIAY	9	Unmodified	_EERADLIAY_					0	0	0		ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	MULTI-MSMS	HCT116MG_D190212_S2	2	540.2722778320312	2	540.272021	1078.52949	0.43383	0.00023439	0.48198	0.0002604	0.91581	0.00049479	540.2721710737411	39.58	0.61198	39.502	39.328	39.94	-0.077835					34	11	4	0	0	0	0.0042464	1	14883	14883		147.06	78.978	1	1053399999.9999999		+	8640	5235	4799	4837	8376	8376					-0.006634551446268233
EERADLIAY	9	Unmodified	_EERADLIAY_					0	0	0		ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	MULTI-MSMS	HCT116MG_D190212_S3	3	540.2724609375	2	540.272021	1078.52949	0.34842	0.00018824	0.46568	0.00025159	0.8141	0.00043984	540.2720990122714	39.859	0.46605	39.558	39.437	39.903	-0.30137					71	26	4	0	0	0	0.11731	2	14759	14759;14898		54.774	28.432	1	208380000		+	8641	5235	4799	4837	8377;8378	8377					-0.006634551446268233
EERADLIAY	9	Unmodified	_EERADLIAY_					0	0	0		ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	MULTI-MSMS	HCT116MG_D190212_S4	4	540.7744140625	2	540.272021	1078.52949	0.47943	0.00025902	0.58468	0.00031589	1.0641	0.00057491	540.2720475706712	39.962	0.29911	39.582	39.47	39.769	-0.37936					44	18	3	0	0	0	0.077982	2	14621	14617;14621		62.573	16.552	1	36928000		+	8642	5235	4799	4837	8379;8380	8380					-0.006634551446268233
EERAKYLAA	9	Unmodified	_EERAKYLAA_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-MSMS	HCT116MG_D190212_S1	1	525.7825927734375	2	525.782556	1049.55056	0.43822	0.00023041	-0.065465	-3.4421E-05	0.37275	0.00019599	525.7825257119626	24.191	0.20952	24.191	24.045	24.255	0					5	3	2	0	0	0	0.21959	1	8671	8671		49.554	9.6046	1	5166800			8643	2546	4800	4838	8381	8381					0.027765549548803392
EERAKYLAA	9	Unmodified	_EERAKYLAA_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-MSMS	HCT116MG_D190212_S2	2	525.782958984375	2	525.782556	1049.55056	0.42846	0.00022528	0.013776	7.2429E-06	0.44224	0.00023252	525.7824896615565	24.75	0.25991	24.37	24.239	24.499	-0.38003					10	4	3	0	0	0	0.053079	1	8884	8884		89.401	49.451	1	74362000			8644	2546	4800	4838	8382	8382					0.027765549548803392
EERAKYLAA	9	Unmodified	_EERAKYLAA_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-MSMS	HCT116MG_D190212_S3	3	525.7828369140625	2	525.782556	1049.55056	0.24309	0.00012781	0.22579	0.00011872	0.46889	0.00024653	525.7826168830588	24.139	0.31222	24.077	23.947	24.259	-0.061449					14	5	3	0	0	0	0.030601	1	8558	8558		103.42	51.79	1	43504000			8645	2546	4800	4838	8383	8383					0.027765549548803392
EERAKYLAA	9	Unmodified	_EERAKYLAA_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-MSMS	HCT116MG_D190212_S3	3	351.19219970703125	3	350.857463	1049.55056	-0.23865	-8.3732E-05	-0.11663	-4.0922E-05	-0.35528	-0.00012465	350.8573510288234	24.139	0.20833	24.077	23.947	24.155	-0.061449					9	3	3	0	0	0	0.23993	1	8572	8572		37.075	18.702	1	15149000			8646	2546	4800	4838	8384	8384					0.027765549548803392
EERAKYLAA	9	Unmodified	_EERAKYLAA_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-MSMS	HCT116MG_D190212_S4	4	525.7826538085938	2	525.782556	1049.55056	0.57168	0.00030058	-0.17383	-9.1399E-05	0.39785	0.00020918	525.7823551613892	24.481	0.36295	24.212	24.082	24.445	-0.26881					11	6	2	0	0	0	0.062126	1	8634	8634		83.429	39.656	1	17511000			8647	2546	4800	4838	8385	8385					0.027765549548803392
EERAKYLAA	9	Unmodified	_EERAKYLAA_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;MAP7D1|p.R498Efs*77|2|0.32|ENSG00000116871|chr1:36177980-36177980|C/-|frameshift_variant;MAP7D1|p.C481Afs*94|2|0.29|ENSG00000116871|chr1:36177929-36177929|C/-|frameshift_variant;MAP7D1|p.A565Rfs*10|1|0.29|ENSG00000116871|chr1:36178180-36178180|C/-|frameshift_variant	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-MATCH	HCT116MG_D190212_S2	2		3	350.857463	1049.55056	-0.11437	-4.0129E-05	0.018895	6.6295E-06	-0.09548	-3.35E-05	351.1918087972248	24.776	0.20821	24.399	24.242	24.45	-0.37755	0.16257	0.00013879	NaN	37.075	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11064000			8648	2546	4800	4838							0.027765549548803392
EERAPGPDLY	10	Unmodified	_EERAPGPDLY_					0	0	0			REV__NUDT17|p.K312R|1|0.12|ENSG00000186364|chr1:145848427-145848427|A/G|missense_variant	REV__NUDT17|p.K312R|1|0.12|ENSG00000186364|chr1:145848427-145848427|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	573.7752075195312	2	573.774928	1145.5353	0.46744	0.00026821	0.30254	0.00017359	0.76999	0.0004418	573.7748642697056	42.109	0.50805	41.807	41.48	41.988	-0.30257					15	9	3	0	0	0	0.40515	1	15679	15679		41.84	3.2249	1	16422000	+		8649	17357	4801	4839	8386	8386					-0.031643566329421446
EERAPGPDLY	10	Unmodified	_EERAPGPDLY_					0	0	0			REV__NUDT17|p.K312R|1|0.12|ENSG00000186364|chr1:145848427-145848427|A/G|missense_variant	REV__NUDT17|p.K312R|1|0.12|ENSG00000186364|chr1:145848427-145848427|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	573.775390625	2	573.774928	1145.5353	0.50514	0.00028983	-0.53002	-0.00030411	-0.024889	-1.4281E-05	573.7750932741948	42.178	0.25888	41.802	41.684	41.942	-0.37565					9	4	3	0	0	0	0.40515	1	15514	15514		41.84	9.7227	1	2144100	+		8650	17357	4801	4839	8387	8387					-0.031643566329421446
EERARFYGA	9	Unmodified	_EERARFYGA_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000480878.6_1_19:40741944-40744877:-|nuORF;ENST00000580878.1_1_19:40741997-40745051:-|nuORF;ENST00000483166.5_1_19:40743617-40745051:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	HCT116MG_D190212_S3	3	549.7700805664062	2	549.76998	1097.52541	0.52488	0.00028856	0.10107	5.5563E-05	0.62594	0.00034413	549.7698466155929	26.586	0.31214	26.437	26.307	26.619	-0.14924					6	5	2	0	0	0	0.39784	1	9574	9574		22.736	4.5899	1	6424600			8651	1990	4802	4840	8388	8388					-0.019454998476703622
EERARWTET	9	Unmodified	_EERARWTET_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MSMS	HCT116MG_D190212_S2	2	589.3016967773438	2	589.283451	1176.55235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.054	1	23.671	23.171	24.171	-0.38324								0	0	0	0.47756	1	8602	8602		29.841	2.2118	1				8652	2066	4803	4841	8389	8389					-0.02886436027142736
EERDPSPVA	9	Unmodified	_EERDPSPVA_					0	0	0		nc|ENSG00000133114|Q8IXQ4-4|GPALPP1;ENSG00000133114|ENST00000379151|GPALPP1	nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	MULTI-MSMS	HCT116MG_D190212_S3	3	500.24139404296875	2	500.240721	998.466889	0.32566	0.00016291	0.26105	0.00013059	0.58671	0.0002935	500.2407489073267	21.178	0.78683	21.197	20.855	21.641	0.018448					18	7	3	0	0	0	0.05892	1	7354	7354		70.332	39.695	1	15704000			8653	3227	4804	4842	8390	8390					-0.0324060121280354
EERDPSPVA	9	Unmodified	_EERDPSPVA_					0	0	0		nc|ENSG00000133114|Q8IXQ4-4|GPALPP1;ENSG00000133114|ENST00000379151|GPALPP1	nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	MULTI-MSMS	HCT116MG_D190212_S4	4	500.24090576171875	2	500.240721	998.466889	0.42232	0.00021126	-0.29254	-0.00014634	0.12979	6.4925E-05	500.2405576516926	21.425	0.51935	21.207	20.855	21.374	-0.21832					10	5	2	0	0	0	0.17622	1	7432	7432		43.772	12.504	1	5891500			8654	3227	4804	4842	8391	8391					-0.0324060121280354
EERDPSPVA	9	Unmodified	_EERDPSPVA_					0	0	0		nc|ENSG00000133114|Q8IXQ4-4|GPALPP1;ENSG00000133114|ENST00000379151|GPALPP1	nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	500.240721	998.466889	0.29182	0.00014598	-0.12791	-6.3985E-05	0.16391	8.1994E-05	500.2406321366142	21.786	0.41582	21.401	21.115	21.531	-0.38503	0.13264	-0.00014248	NaN	70.332	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13363000			8655	3227	4804	4842							-0.0324060121280354
EERDTFREA	9	Unmodified	_EERDTFREA_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	576.76806640625	2	576.767634	1151.52072	0.4619	0.00026641	0.15771	9.0962E-05	0.61961	0.00035737	576.7677499836653	21.411	0.2638	21.411	21.226	21.489	0					10	4	3	0	0	0	0.0064252	1	7531	7531		125.18	71.348	1	25304000			8656	7054	4805	4843	8392	8392					-0.048984287810981186
EERDTFREA	9	Unmodified	_EERDTFREA_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	384.84783935546875	3	384.847515	1151.52072	-0.10808	-4.1594E-05	0.19172	7.3782E-05	0.083636	3.2187E-05	384.8476036990519	21.411	0.2638	21.411	21.226	21.489	0					7	4	2	0	0	0	0.094138	1	7544	7544		48.073	34.554	1	12498000			8657	7054	4805	4843	8393	8393					-0.048984287810981186
EERDTFREA	9	Unmodified	_EERDTFREA_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	576.7679443359375	2	576.767634	1151.52072	0.28477	0.00016425	0.23664	0.00013649	0.52141	0.00030073	576.7677588001477	21.942	0.41677	21.557	21.375	21.792	-0.38503					22	7	5	0	0	0	0.0035269	1	7728	7728		169.92	105.96	1	315090000			8658	7054	4805	4843	8394	8394					-0.048984287810981186
EERDTFREA	9	Unmodified	_EERDTFREA_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	384.8476257324219	3	384.847515	1151.52072	-0.1507	-5.7996E-05	0.1142	4.395E-05	-0.036497	-1.4046E-05	384.84753376807316	21.935	0.36457	21.55	21.375	21.739	-0.38503					14	6	3	0	0	0	0.051033	1	7737	7737		60.899	39.658	1	93649000			8659	7054	4805	4843	8395	8395					-0.048984287810981186
EERDTFREA	9	Unmodified	_EERDTFREA_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1152.5291748046875	1	1152.52799	1151.52072	0.37876	0.00043654	-0.023359	-2.6922E-05	0.35541	0.00040962	1152.52816234323	21.942	0.20865	21.557	21.427	21.635	-0.38503					7	3	3	0	0	0	0.0019891	1	7762	7762		187.14	117.8	1	14626000			8660	7054	4805	4843	8396	8396					-0.048984287810981186
EERDTFREA	9	Unmodified	_EERDTFREA_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	576.767578125	2	576.767634	1151.52072	0.33982	0.000196	0.041553	2.3967E-05	0.38138	0.00021997	576.7676571424265	21.226	0.52568	21.245	21.063	21.588	0.018446					22	9	4	0	0	0	0.0035269	1	7370	7370		169.92	103.47	1	155060000			8661	7054	4805	4843	8397	8397					-0.048984287810981186
EERDTFREA	9	Unmodified	_EERDTFREA_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	384.8474426269531	3	384.847515	1151.52072	-0.18047	-6.9452E-05	0.089471	3.4433E-05	-0.090996	-3.502E-05	384.847508338265	21.225	0.63177	21.243	21.063	21.694	0.018448					28	11	4	0	0	0	0.032914	1	7373	7373		68.76	47.519	1	80097000			8662	7054	4805	4843	8398	8398					-0.048984287810981186
EERDTFREA	9	Unmodified	_EERDTFREA_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	576.7677001953125	2	576.767634	1151.52072	0.40491	0.00023354	-0.35735	-0.00020611	0.04756	2.7431E-05	576.7676239883365	21.566	0.46714	21.348	21.166	21.633	-0.21832					21	8	4	0	0	0	0.0034992	1	7456	7456		158.08	102.57	1	63232000			8663	7054	4805	4843	8399	8399					-0.048984287810981186
EERDTFREA	9	Unmodified	_EERDTFREA_					0	0	0		ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	384.847412109375	3	384.847515	1151.52072	0.077716	2.9909E-05	0.069033	2.6567E-05	0.14675	5.6476E-05	384.8474529998326	21.566	0.41516	21.348	21.218	21.633	-0.21832					15	7	3	0	0	0	0.051033	1	7457	7457		60.899	38.79	1	26427000			8664	7054	4805	4843	8400	8400					-0.048984287810981186
EEREETFSQVI	11	Unmodified	_EEREETFSQVI_					0	0	0		nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2	nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2	nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2	MULTI-SECPEP	HCT116MG_D190212_S1	1	683.3484497070312	2	683.827889	1365.64122	0.65365	0.00044698	0.25398	0.00017368	0.90763	0.00062066	683.8281905659168	31.953	0.36523	31.953	31.753	32.118	0					9	6	2	0	0	0	0.34063	1	11709	11709		12.873	5.7709	1	4883300			8665	9389	4806	4844	8401	8401					-0.026970655781497044
EEREGITVY	9	Unmodified	_EEREGITVY_					0	0	0		ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	548.2692260742188	2	548.269478	1094.5244	0.52326	0.00028689	-0.16092	-8.8228E-05	0.36234	0.00019866	548.269274410683	34.102	0.26111	34.102	33.919	34.181	0					7	4	2	0	0	0	0.13316	1	12653	12653		51.63	5.9302	1	7323200			8666	915	4807	4845	8402	8402					-0.019077590072356543
EEREGITVY	9	Unmodified	_EEREGITVY_					0	0	0		ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	548.26953125	2	548.269478	1094.5244	0.51744	0.0002837	-0.69043	-0.00037854	-0.17298	-9.4841E-05	548.2689940432656	34.273	0.41493	34.097	33.916	34.331	-0.17512					12	7	3	0	0	0	0.05892	1	12753	12753		70.332	32.156	1	45526000			8667	915	4807	4845	8403	8403					-0.019077590072356543
EEREGITVY	9	Unmodified	_EEREGITVY_					0	0	0		ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	548.269478	1094.5244	0.3393	0.00018603	-0.79675	-0.00043683	-0.45745	-0.00025081	548.2691542594908	34.462	0.15605	34.168	34.079	34.235	-0.29479	0.045233	-0.00013103	NaN	70.332	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5775000			8668	915	4807	4845							-0.019077590072356543
EEREKLVKA	9	Unmodified	_EEREKLVKA_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S1	1	367.88018798828125	3	367.880267	1100.61897	0.0046806	1.7219E-06	-0.32712	-0.00012034	-0.32244	-0.00011862	367.8800849721543	17.959	0.41704	17.959	17.672	18.089	0					13	7	3	0	0	0	0.013243	1	6149	6149		105.35	28.297	1	38906000			8669	3958	4808	4846	8404	8404					0.07268799534767822
EEREKLVKA	9	Unmodified	_EEREKLVKA_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S1	1	551.3168334960938	2	551.316763	1100.61897	0.61104	0.00033688	-0.15283	-8.4256E-05	0.45822	0.00025262	551.3166445493554	17.959	0.31276	17.959	17.724	18.037	0					10	5	3	0	0	0	0.050815	1	6150	6150		88.364	27.274	1	28062000			8670	3958	4808	4846	8405	8405					0.07268799534767822
EEREKLVKA	9	Unmodified	_EEREKLVKA_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S2	2	367.8802490234375	3	367.880267	1100.61897	-0.62053	-0.00022828	0.36931	0.00013586	-0.25121	-9.2417E-05	367.8803600141534	18.71	0.41618	18.346	18.217	18.634	-0.36325					20	7	4	0	0	0	0.0093047	1	6449	6449		115.06	29.295	1	129870000			8671	3958	4808	4846	8406	8406					0.07268799534767822
EEREKLVKA	9	Unmodified	_EEREKLVKA_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S3	3	367.880126953125	3	367.880267	1100.61897	-0.34875	-0.0001283	-0.3902	-0.00014355	-0.73895	-0.00027185	367.88016345928645	17.308	0.20826	17.39	17.274	17.483	0.082186					5	3	2	0	0	0	0.054316	1	5815	5815		72.59	24.517	1	4773000			8672	3958	4808	4846	8407	8407					0.07268799534767822
EEREKLVKA	9	Unmodified	_EEREKLVKA_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S3	3	551.3169555664062	2	551.316763	1100.61897	0.14983	8.2605E-05	0.37386	0.00020612	0.5237	0.00028872	551.316978382711	17.318	0.26011	17.4	17.274	17.534	0.081583					8	4	3	0	0	0	0.11491	1	5821	5821		59.368	19.129	1	5397900			8673	3958	4808	4846	8408	8408					0.07268799534767822
EEREKQLAA	9	Unmodified	_EEREKQLAA_					0	0	0		MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	537.2825927734375	2	537.28292	1072.55129	0.52131	0.00028009	0.076366	4.103E-05	0.59767	0.00032112	537.2828757985749	18.011	0.36521	18.011	17.88	18.246	0					16	6	4	0	0	0	0.056114	1	6179	6179		71.708	20.078	1	17643000			8674	3354	4809	4847	8409	8409					0.017913496039454913
EEREKQLAA	9	Unmodified	_EEREKQLAA_					0	0	0		MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2838745117188	2	537.28292	1072.55129	0.016909	9.0847E-06	0.63364	0.00034045	0.65055	0.00034953	537.2831698481624	18.654	0.62518	18.29	18.061	18.686	-0.36325					25	11	4	0	0	0	0.022505	1	6418	6418		93.938	42.308	1	129850000			8675	3354	4809	4847	8410	8410					0.017913496039454913
EEREKQLAA	9	Unmodified	_EEREKQLAA_					0	0	0		MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	358.52435302734375	3	358.524372	1072.55129	-0.62419	-0.00022379	0.37873	0.00013578	-0.24546	-8.8003E-05	358.5245032068907	18.658	0.20749	18.295	18.165	18.373	-0.36325					8	3	3	0	0	0	0.15273	1	6434	6434		37.075	5.4389	1	17186000			8676	3354	4809	4847	8411	8411					0.017913496039454913
EEREKQLAA	9	Unmodified	_EEREKQLAA_					0	0	0		MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	537.283203125	2	537.28292	1072.55129	0.15134	8.1312E-05	0.012834	6.8955E-06	0.16417	8.8208E-05	537.2826924035338	17.478	0.46842	17.559	17.377	17.846	0.081358					16	8	3	0	0	0	0.064006	1	5877	5877		67.838	16.208	1	20271000			8677	3354	4809	4847	8412	8412					0.017913496039454913
EEREKQLAA	9	Unmodified	_EEREKQLAA_					0	0	0		MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MAP7|p.E297Kfs*102|1|0.28|ENSG00000135525|chr6:136366428-136366428|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	537.784912109375	2	537.28292	1072.55129	0.20774	0.00011161	0.48668	0.00026149	0.69442	0.0003731	537.283248867965	17.816	0.20782	17.641	17.532	17.74	-0.17501					5	3	2	0	0	0	0.2257	1	5958	5958		29.082	2.8134	1	2778800			8678	3354	4809	4847	8413	8413					0.017913496039454913
EEREMEEEYMA	11	Unmodified	_EEREMEEEYMA_					0	0	0			REV__ENST00000478509.1_1_X:153674748-153677371:+|nuORF	REV__ENST00000478509.1_1_X:153674748-153677371:+|nuORF	MSMS	HCT116MG_D190212_S2	2	723.2823486328125	2	723.281599	1444.54865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.003	1	42.932	42.432	43.432	-0.070786								0	0	0	0.95521	1	16292	16292		3.5965	2.1146	1		+		8679	10765	4810	4848	8414	8414					-0.1558465469818202
EERENVAVA	9	Unmodified	_EERENVAVA_					0	0	0		ENSG00000143751|ENST00000272091|SDE2;nc|ENSG00000143751|Q6IQ49-2|SDE2;nc|ENSG00000143751|Q6IQ49-3|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7538146972656	2	508.753995	1015.49344	0.21089	0.00010729	0.017837	9.0747E-06	0.22873	0.00011637	508.753982255279	21.963	0.41652	21.964	21.781	22.198	0.00074577					11	7	2	0	0	0	0.049545	1	7682	7682		74.929	21.096	1	20530000			8680	3830	4811	4849	8415	8415					-0.0136891232148173
EERENVAVA	9	Unmodified	_EERENVAVA_					0	0	0		ENSG00000143751|ENST00000272091|SDE2;nc|ENSG00000143751|Q6IQ49-2|SDE2;nc|ENSG00000143751|Q6IQ49-3|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	508.753995	1015.49344	0.17727	9.0186E-05	-0.30789	-0.00015664	-0.13062	-6.6455E-05	508.75408145558043	22.214	0.41542	21.986	21.728	22.143	-0.22777	-0.037851	-0.00021815	NaN	74.929	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4048100			8681	3830	4811	4849							-0.0136891232148173
EERERLEIA	9	Unmodified	_EERERLEIA_					0	0	0		nc|ENSG00000160633|Q15424-2|SAFB;SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant;SAFB|p.D823Tfs*19|1|0.2|ENSG00000160633|chr19:5667361-5667361|G/-|frameshift_variant;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	MULTI-MSMS	HCT116MG_D190212_S2	2	573.3027954101562	2	572.801477	1143.5884	0.46079	0.00026394	-0.84625	-0.00048473	-0.38546	-0.00022079	573.3022453848331	29.77	0.31015	29.469	29.34	29.65	-0.30095					8	5	3	0	0	0	0.3453	1	10948	10948		27.223	6.7696	1	24915000			8682	9516	4812	4850	8416	8416					0.0223502114972689
EERETQVAA	9	Unmodified	_EERETQVAA_					0	0	0		ENST00000591098.1_1_18:43684359-43698283:+|nuORF;ENSG00000152240|ENST00000282058|HAUS1	ENST00000591098.1_1_18:43684359-43698283:+|nuORF	ENST00000591098.1_1_18:43684359-43698283:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7515258789062	2	516.751453	1031.48835	0.107	5.5291E-05	-0.66928	-0.00034585	-0.56228	-0.00029056	516.7514643493454	19.023	0.41715	18.653	18.523	18.94	-0.3695					9	7	2	0	0	0	0.14171	1	6598	6598		49.933	11.757	1	7314900			8683	4142	4813	4851	8417	8417					-0.026132161840678236
EERETQVAA	9	Unmodified	_EERETQVAA_					0	0	0		ENST00000591098.1_1_18:43684359-43698283:+|nuORF;ENSG00000152240|ENST00000282058|HAUS1	ENST00000591098.1_1_18:43684359-43698283:+|nuORF	ENST00000591098.1_1_18:43684359-43698283:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	517.2423706054688	2	516.751453	1031.48835	0.19453	0.00010052	-0.07933	-4.0994E-05	0.1152	5.9531E-05	516.7512038364183	18.259	0.15638	18.335	18.205	18.361	0.076334					4	2	2	0	0	0	0.19273	1	6182	6182		29.082	0	1	2343200			8684	4142	4813	4851	8418	8418					-0.026132161840678236
EEREWGQPLAP	11	Unmodified	_EEREWGQPLAP_					0	0	0			REV__ENSG00000071655|ENST00000434436|MBD3	REV__ENSG00000071655|ENST00000434436|MBD3	MSMS	HCT116MG_D190212_S2	2	656.3226318359375	2	656.320034	1310.62551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.821	1	16.479	15.979	16.979	-0.34183								0	0	0	0.93456	1	5686	5686		14.405	4.2548	1		+		8685	10764	4814	4852	8419	8419					-0.017373073045064302
EERGFDKAY	9	Unmodified	_EERGFDKAY_					0	0	0		ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	MULTI-MSMS	HCT116MG_D190212_S1	1	557.7618408203125	2	557.76182	1113.50909	0.49691	0.00027716	-0.061695	-3.4411E-05	0.43521	0.00024274	557.7616493496643	24.751	0.15693	24.751	24.673	24.83	0					4	2	2	0	0	0	0.16143	1	8897	8897		57.722	27.085	1	9302000			8686	5374	4815	4853	8420	8420					-0.043126258044367205
EERGFDKAY	9	Unmodified	_EERGFDKAY_					0	0	0		ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7621459960938	2	557.76182	1113.50909	0.44681	0.00024921	0.22785	0.00012709	0.67466	0.0003763	557.7617906492708	25.223	0.3122	24.848	24.712	25.024	-0.37521					15	5	4	0	0	0	0.034217	1	9095	9095		97.741	66.473	1	38828000			8687	5374	4815	4853	8421	8421					-0.043126258044367205
EERGFDKAY	9	Unmodified	_EERGFDKAY_					0	0	0		ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	ENSG00000175334|ENST00000312175|BANF1	MULTI-MSMS	HCT116MG_D190212_S3	3	557.7628173828125	2	557.76182	1113.50909	0.48404	0.00026998	0.25965	0.00014482	0.74369	0.0004148	557.7620958834078	24.919	0.26027	24.835	24.705	24.966	-0.083694					7	4	2	0	0	0	0.086419	1	8884	8884		65.474	23.634	1	5569400			8688	5374	4815	4853	8422	8422					-0.043126258044367205
EERGLKITY	9	Unmodified	_EERGLKITY_					0	0	0		ENSG00000046604|ENST00000261590|DSG2;DSG2|p.I845*|1|0.27|ENSG00000046604|chr18:31545914-31545914|A/-|frameshift_variant	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	HCT116MG_D190212_S2	2	554.8275146484375	2	554.803488	1107.59242	0.40654	0.00022555	0.1856	0.00010297	0.59215	0.00032852	554.8035773781746	33.806	0.15632	33.613	33.534	33.691	-0.19297					4	2	2	0	0	0	0.19936	1	12586	12586		27.629	9.2557	1	9044500			8689	1022	4816	4854	8423	8423					0.0429311064342528
EERHKEKRHKE	11	Unmodified	_EERHKEKRHKE_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-SECPEP	HCT116MG_D190212_S1	1	753.0748291015625	2	753.400212	1504.78587	0.88294	0.00066521	1.4916	0.0011238	2.3745	0.001789	753.9045648620897	16.891	0.15648	16.891	16.785	16.942	0					4	2	2	0	0	0	0.36367	1	5715	5715		5.7319	3.2334	1	1205900			8690	2950	4817	4855	8424	8424					0.053670404123749904
EERIDTPP	8	Unmodified	_EERIDTPP_					0	0	0		nc|ENSG00000165494|O94913|PCF11;ENSG00000165494|ENST00000690938|PCF11	nc|ENSG00000165494|O94913|PCF11	nc|ENSG00000165494|O94913|PCF11	MSMS	HCT116MG_D190212_S3	3	478.737060546875	2	478.737814	955.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.91	1	32.624	32.124	33.124	-0.28511								0	0	0	0.85589	1	12079	12079		18.135	1.1927	1				8691	4778	4818	4856	8425	8425					-0.018436997244748454
EERIDVLVP	9	Unmodified	_EERIDVLVP_					0	0	0			REV__nc|ENSG00000121236|Q9C030|TRIM6	REV__nc|ENSG00000121236|Q9C030|TRIM6	MULTI-MSMS	HCT116MG_D190212_S3	3	535.2504272460938	2	535.298039	1068.58152	0.7408	0.00039655	0.19232	0.00010295	0.93312	0.0004995	535.2980842421447	48.829	0.31071	48.513	48.399	48.71	-0.31596					8	5	2	0	0	0	0.24895	1	18410	18410		36.127	6.2864	1	2530500	+		8692	11711	4819	4857	8426	8426					0.04997708269138457
EERIDVLVP	9	Unmodified	_EERIDVLVP_					0	0	0			REV__nc|ENSG00000121236|Q9C030|TRIM6	REV__nc|ENSG00000121236|Q9C030|TRIM6	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	535.298039	1068.58152	0.23661	0.00012666	0.50798	0.00027192	0.74459	0.00039858	535.2981914256403	48.589	0.30871	48.589	48.408	48.717	0	0.037917	0.00011721	NaN	36.127	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8524800	+		8693	11711	4819	4857							0.04997708269138457
EERIDVLVP	9	Unmodified	_EERIDVLVP_					0	0	0			REV__nc|ENSG00000121236|Q9C030|TRIM6	REV__nc|ENSG00000121236|Q9C030|TRIM6	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	535.298039	1068.58152	0.7408	0.00039655	0.19232	0.00010295	0.93312	0.0004995	535.2980842421447	48.829	0.31071	48.513	48.399	48.71	-0.31596	-0.037917	-0.00022074	NaN	36.127	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2530500	+		8694	11711	4819	4857							0.04997708269138457
EERIEGRVAA	10	Unmodified	_EERIEGRVAA_					0	0	0		ENST00000380393.7_1_20:2844875-2903853:+|nuORF;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	377.2034606933594	3	377.203522	1128.58874	-0.21923	-8.2696E-05	0.095107	3.5875E-05	-0.12413	-4.6821E-05	377.2035283669621	21.07	0.31222	21.105	20.975	21.287	0.034473					12	5	3	0	0	0	0.066546	1	7333	7333		62.78	5.3034	1	20764000			8695	6449	4820	4858	8427	8427					0.029584408695882303
EERIVELF	8	Unmodified	_EERIVELF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7788696289062	2	517.779482	1033.54441	0.19476	0.00010084	-0.021237	-1.0996E-05	0.17352	8.9844E-05	517.7793998475116	53.954	0.36036	53.764	53.584	53.945	-0.1894					11	6	2	0	0	0	0.079196	1	20747	20747		99.799	14.527	1	60926000			8696	5022	4821	4859	8428	8428					0.028980367233771176
EERIVELF	8	Unmodified	_EERIVELF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	HCT116MG_D190212_S3	3	517.779541015625	2	517.779482	1033.54441	0.20915	0.00010829	0.21765	0.0001127	0.4268	0.00022099	517.7795074041956	54.094	0.31229	53.795	53.613	53.925	-0.29946					16	5	4	0	0	0	0.12671	1	20491	20491		88.954	10.226	1	20493000			8697	5022	4821	4859	8429	8429					0.028980367233771176
EERIVELF	8	Unmodified	_EERIVELF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	HCT116MG_D190212_S4	4	518.2811279296875	2	517.779482	1033.54441	0.34983	0.00018114	0.12904	6.6816E-05	0.47888	0.00024795	517.7794335467433	54.125	0.26044	53.795	53.613	53.874	-0.32923					9	4	3	0	0	0	0.24264	1	20237	20237		65.235	12.967	1	8134100			8698	5022	4821	4859	8430	8430					0.028980367233771176
EERIVELF	8	Unmodified	_EERIVELF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	517.779482	1033.54441	0.50162	0.00025973	-0.077267	-4.0007E-05	0.42435	0.00021972	517.7794461773666	53.694	0.20665	53.694	53.565	53.771	0	-0.068088	-0.00013931	NaN	99.799	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14721000			8699	5022	4821	4859							0.028980367233771176
EERKGLITA	9	Unmodified	_EERKGLITA_					0	0	0		GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant;ENSG00000139629|ENST00000356317|GALNT6	GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7908630371094	2	508.790381	1015.56621	0.4761	0.00024224	0.25085	0.00012763	0.72695	0.00036987	508.79040578419654	26.257	0.25837	25.895	25.766	26.024	-0.36164					10	4	3	0	0	0	0.019537	1	9501	9501		96.936	30.479	1	31157000			8700	3637	4822	4860	8431	8431					0.05904841471954114
EERKGLITA	9	Unmodified	_EERKGLITA_					0	0	0		GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant;ENSG00000139629|ENST00000356317|GALNT6	GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7903137207031	2	508.790381	1015.56621	0.327	0.00016637	-0.15051	-7.6576E-05	0.17649	8.9797E-05	508.7901272138443	25.798	0.31275	25.67	25.494	25.807	-0.12795					12	5	3	0	0	0	0.043159	1	9231	9231		78.06	26.431	1	16119000			8701	3637	4822	4860	8432	8432					0.05904841471954114
EERKGLITA	9	Unmodified	_EERKGLITA_					0	0	0		GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant;ENSG00000139629|ENST00000356317|GALNT6	GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	508.7908630371094	2	508.790381	1015.56621	0.16181	8.2328E-05	0.16661	8.4768E-05	0.32842	0.0001671	508.7904422364458	26.092	0.26031	25.802	25.672	25.932	-0.29022					11	4	3	0	0	0	0.035298	1	9289	9289		81.915	28.082	1	8386400			8702	3637	4822	4860	8433	8433					0.05904841471954114
EERKGMVA	8	Unmodified	_EERKGMVA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MSMS	HCT116MG_D190212_S2	2	460.2369079589844	2	460.236927	918.459301	-0.14384	-6.6202E-05	0.314	0.00014451	0.17015	7.8311E-05	460.237091771088	18.345	0.20913	17.982	17.904	18.113	-0.36325					5	3	2	0	0	0	0.3588	1	6329	6329		53.833	19.73	1	8410000			8703	2855	4823	4861	8434	8434					-0.003190320140674885
EERKGMVA	8	Unmodified	_EERKGMVA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	460.236927	918.459301	0.28762	0.00013237	0.25399	0.0001169	0.54162	0.00024927	460.2375052418921	17.698	0.26059	17.698	17.62	17.88	0	-0.14202	-5.4353E-05	NaN	53.833	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2001300			8704	2855	4823	4861							-0.003190320140674885
EERKGMVAA	9	Unmodified	_EERKGMVAA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MSMS	HCT116MG_D190212_S1	1	495.75592041015625	2	495.755484	989.496415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.722	1	18.722	18.222	19.222	0								0	0	0	0.1947	1	6452	6452		47.749	9.7747	1				8705	2855	4824	4862	8435	8435					0.0012463953169117303
EERKGMVAA	9	Unmodified	_EERKGMVAA_					0	0	0		ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	ENSG00000124588|ENST00000380455|NQO2	MULTI-MSMS	HCT116MG_D190212_S2	2	495.755615234375	2	495.755484	989.496415	0.33917	0.00016814	0.18432	9.1377E-05	0.52349	0.00025952	495.75551778479513	19.388	0.416	19.018	18.836	19.252	-0.3695					10	7	2	0	0	0	0.030039	1	6720	6720		86.332	34.702	1	51778000			8706	2855	4824	4862	8436	8436					0.0012463953169117303
EERKILENA	9	Unmodified	_EERKILENA_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant;STAT1|p.R121I|1|0.25|ENSG00000115415|chr2:191007573-191007573|C/A|missense_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	HCT116MG_D190212_S2	2	551.2988891601562	2	551.29857	1100.58259	0.42581	0.00023475	0.05504	3.0344E-05	0.48085	0.00026509	551.2986398091084	24.905	0.20708	24.53	24.4	24.608	-0.37521					8	3	3	0	0	0	0.069943	1	8972	8972		61.602	15.902	1	24516000			8707	2467	4825	4863	8437	8437					0.03631922638055585
EERKLFSVP	9	Unmodified	_EERKLFSVP_					0	0	0		nc|nan|Q9H6X5-2|C19orf44;ENSG00000105072|ENST00000221671|C19orf44	nc|nan|Q9H6X5-2|C19orf44	nc|nan|Q9H6X5-2|C19orf44	MULTI-MSMS	HCT116MG_D190212_S2	2	552.8062744140625	2	552.806031	1103.59751	0.49079	0.00027131	0.45424	0.00025111	0.94503	0.00052242	552.8061695202498	40.666	0.51648	40.596	40.519	41.036	-0.069626					13	9	2	0	0	0	0.20521	1	15377	15377		51.63	2.0755	1	13990000			8708	1979	4826	4864	8438	8438					0.04985414506040797
EERKQWLEA	9	Unmodified	_EERKQWLEA_					0	0	0		ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	594.8040771484375	2	594.80402	1187.59349	0.63944	0.00038034	0.058367	3.4717E-05	0.69781	0.00041506	594.8038347708585	33.545	0.2595	33.255	33.096	33.356	-0.29013					7	4	2	0	0	0	0.12421	1	12332	12332		53.404	22.136	1	8178400			8709	170	4827	4865	8439	8439					0.007193250123464168
EERKTDSY	8	Unmodified	_EERKTDSY_					0	0	0		ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;DPP9|p.F814Sfs*10|1|0.34|ENSG00000142002|chr19:4679893-4679893|A/-|frameshift_variant;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	MSMS	HCT116MG_D190212_S1	1	514.238525390625	2	514.238178	1026.4618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.796	1	15.796	15.296	16.296	0								0	0	0	0.48722	1	5273	5273		43.858	3.901	1				8710	729	4828	4866	8440	8440					-0.05036905075417053
EERKTNLSA	9	Unmodified	_EERKTNLSA_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	HCT116MG_D190212_S2	2	524.2752685546875	2	524.275095	1046.53564	0.36739	0.00019261	0.14333	7.5144E-05	0.51072	0.00026776	524.2750929386413	17.85	0.36562	17.494	17.232	17.597	-0.35647					8	3	3	0	0	0	0.012531	2	6112	6112;6133		107.1	39.261	1	18642000			8711	5347	4829	4867	8441;8442	8441					0.01423063086917864
EERKTNLSA	9	Unmodified	_EERKTNLSA_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	524.275095	1046.53564	0.55164	0.00028921	-0.14724	-7.7194E-05	0.4044	0.00021202	524.274984086404	17.281	0.20863	17.281	17.15	17.359	0	-0.1065	-0.00015041	NaN	107.1	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4700500			8712	5347	4829	4867							0.01423063086917864
EERLCKRSKI	10	Unmodified	_EERLCKRSKI_					0	0	0			REV__TMED10|p.N39K|1|0.45|ENSG00000170348|chr14:75176463-75176463|G/C|missense_variant	REV__TMED10|p.N39K|1|0.45|ENSG00000170348|chr14:75176463-75176463|G/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	631.353515625	2	631.355896	1260.69724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.293	1	42.293	41.793	42.793	0								0	0	0	0.91279	1	15948	15948		13.042	4.8869	1		+		8713	17642	4830	4868	8443	8443					0.07731908848359126
EERLDAPAGP	10	Unmodified	_EERLDAPAGP_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MULTI-MSMS	HCT116MG_D190212_S4	4	527.76171875	2	527.76182	1053.50909	0.48562	0.00025629	0.17811	9.3997E-05	0.66372	0.00035029	527.7616548352278	27.236	1.1853	26.925	26.69	27.876	-0.3114					39	22	2	0	0	0	0.56527	1	9980	9980		30.637	5.6456	1	4861900	+		8714	13074	4831	4869	8444	8444					-0.015526258044474162
EERLNAGLGP	10	Unmodified	_EERLNAGLGP_					0	0	0		ENST00000495036.5_1_7:120629669-120690919:+|nuORF;ENST00000521774.1_1_7:120655823-120690468:+|nuORF;nc|ENSG00000106034|A4D0V7-2|CPED1;CPED1|p.H927Tfs*4|2|0.25|ENSG00000106034|chr7:121271333-121271334|-/A|frameshift_variant;ENSG00000106034|ENST00000310396|CPED1	ENST00000495036.5_1_7:120629669-120690919:+|nuORF	ENST00000495036.5_1_7:120629669-120690919:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	528.2772216796875	2	528.277638	1054.54072	0.36233	0.00019141	-0.50551	-0.00026705	-0.14318	-7.5637E-05	528.2770773563266	21.438	0.26481	21.456	21.323	21.588	0.018446					7	4	2	0	0	0	0.61598	1	7493	7493		31.268	0	1	11112000			8715	8375	4832	4870	8445	8445					0.015633669495173308
EERLNLVEA	9	Unmodified	_EERLNLVEA_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2;MSH2|p.R382Ifs*26|1|0.23|ENSG00000095002|chr2:47429809-47429821|CGTCGATTCCCAG/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	536.7855834960938	2	536.785296	1071.55604	0.41149	0.00022088	-0.05019	-2.6941E-05	0.3613	0.00019394	536.7854108084911	38.476	0.42001	38.389	38.069	38.489	-0.087223					12	7	3	0	0	0	0.17622	1	14468	14468		43.772	1.9328	1	26030000			8716	1601	4833	4871	8446	8446					0.023122337467157195
EERLQNIEA	9	Unmodified	_EERLQNIEA_					0	0	0		nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP;nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	nc|ENSG00000151332|Q9NS73-5|MBIP	MSMS	HCT116MG_D190212_S4	4	551.2807006835938	2	551.280377	1100.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.915	1	30.551	30.051	31.051	-0.36416								0	0	0	0.27468	1	11198	11198		41.956	0.11592	1				8717	4108	4834	4872	8447	8447					-4.9542586793904775E-05
EERNLLSVA	9	Unmodified	_EERNLLSVA_					0	0	0		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;nc|ENSG00000175793|P31947-2|SFN;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000175793|ENST00000339276|SFN;ENSG00000108953|ENST00000264335|YWHAE	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7808227539062	2	515.780013	1029.54547	0.34346	0.00017715	1.0834	0.00055881	1.4269	0.00073596	515.7804877129337	41.506	0.35951	41.437	41.293	41.653	-0.068195					8	6	2	0	0	0	0.14362	1	15707	15707		49.554	5.7819	1	20478000			8718	4731	4835	4873	8448	8448					0.03188251092274186
EERNLLSVA	9	Unmodified	_EERNLLSVA_					0	0	0		YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;nc|ENSG00000175793|P31947-2|SFN;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000175793|ENST00000339276|SFN;ENSG00000108953|ENST00000264335|YWHAE	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	YWHAZ|p.K115Sfs*16|1|0.39|ENSG00000164924|chr8:100924989-100924990|TT/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	515.7808227539062	2	515.780013	1029.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.755	1	41.452	40.952	41.952	-0.30257								0	0	0	0.29838	1	15534	15534		40.239	5.8375	1				8719	4731	4835	4873	8449	8449					0.03188251092274186
EERPPTLSA	9	Unmodified	_EERPPTLSA_					0	0	0		ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	500.25885009765625	2	500.258914	998.503274	0.6625	0.00033142	-0.31631	-0.00015824	0.34619	0.00017319	500.25872089839095	28.615	0.68629	28.615	28.164	28.851	0					26	12	3	0	0	0	0.012531	1	10391	10391		107.1	54.831	1	30681000			8720	4857	4836	4874	8450	8450					0.0039627568389732915
EERPPTLSA	9	Unmodified	_EERPPTLSA_					0	0	0		ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	500.25933837890625	2	500.258914	998.503274	0.38099	0.00019059	0.17925	8.9672E-05	0.56024	0.00028027	500.2588941660945	29.033	0.71468	28.717	28.301	29.015	-0.31613					34	13	4	0	0	0	0.0082095	1	10558	10558		117.76	56.403	1	242520000			8721	4857	4836	4874	8451	8451					0.0039627568389732915
EERPPTLSA	9	Unmodified	_EERPPTLSA_					0	0	0		ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	999.5106811523438	1	999.510551	998.503274	0.47604	0.00047581	-0.059108	-5.908E-05	0.41693	0.00041673	999.5106327140844	29.072	0.35869	28.756	28.504	28.863	-0.31613					11	6	2	0	0	0	0.0035183	1	10608	10608		157.8	57.996	1	29135000			8722	4857	4836	4874	8452	8452					0.0039627568389732915
EERPPTLSA	9	Unmodified	_EERPPTLSA_					0	0	0		ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	MULTI-MSMS	HCT116MG_D190212_S3	3	500.25921630859375	2	500.258914	998.503274	0.5747	0.0002875	-0.029471	-1.4743E-05	0.54523	0.00027276	500.25883201226617	29.037	1.0412	28.815	28.213	29.254	-0.22195					59	19	5	0	0	0	0.011132	2	10638	10399;10638		110.55	58.923	1	170580000			8723	4857	4836	4874	8453;8454	8454					0.0039627568389732915
EERPPTLSA	9	Unmodified	_EERPPTLSA_					0	0	0		ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	MULTI-MSMS	HCT116MG_D190212_S3	3	999.510986328125	1	999.510551	998.503274	0.66531	0.00066499	-0.1953	-0.0001952	0.47001	0.00046978	999.5105358336914	29.05	0.46844	28.828	28.525	28.994	-0.22195					14	8	2	0	0	0	0.0035183	1	10525	10525		157.8	75.905	1	12190000			8724	4857	4836	4874	8455	8455					0.0039627568389732915
EERPPTLSA	9	Unmodified	_EERPPTLSA_					0	0	0		ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	MULTI-MSMS	HCT116MG_D190212_S4	4	500.2588195800781	2	500.258914	998.503274	0.37867	0.00018943	0.11403	5.7044E-05	0.49269	0.00024647	500.2588862923063	29.196	1.0384	28.855	28.211	29.249	-0.34059					41	19	3	0	0	0	0.0201	2	10420	10420;10506		96.367	44.098	1	69792000			8725	4857	4836	4874	8456;8457	8456					0.0039627568389732915
EERPPTLSA	9	Unmodified	_EERPPTLSA_					0	0	0		ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	MULTI-MSMS	HCT116MG_D190212_S4	4	999.5100708007812	1	999.510551	998.503274	0.59042	0.00059013	-0.050773	-5.0748E-05	0.53965	0.00053938	999.5103858302581	29.184	0.31145	28.844	28.678	28.989	-0.34059					8	5	2	0	0	0	0.0035381	1	10543	10543		171.09	78.595	1	4562400			8726	4857	4836	4874	8458	8458					0.0039627568389732915
EERPWLWVV	9	Unmodified	_EERPWLWVV_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S2	2	607.3221435546875	2	607.321848	1212.62914	0.69777	0.00042377	0.01174	7.1298E-06	0.70951	0.0004309	607.3217602410386	57.932	0.20934	57.757	57.626	57.835	-0.17494					9	3	4	0	0	0	0.026999	1	22380	22380		89.401	43.38	1	86609000			8727	2954	4837	4875	8459	8459					0.03133407259974774
EERQKIEEA	9	Unmodified	_EERQKIEEA_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	HCT116MG_D190212_S2	2	566.28564453125	2	566.28566	1130.55677	0.4043	0.00022895	-0.084306	-4.7741E-05	0.32	0.00018121	566.2854776174784	17.87	0.20903	17.514	17.388	17.597	-0.35647					8	3	3	0	0	0	0.37942	1	6135	6135		23.79	0	1	7469200			8728	3370	4838	4876	8460	8460					-0.0032897160422180605
EERQKYLEA	9	Unmodified	_EERQKYLEA_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	583.2960205078125	2	583.296027	1164.5775	0.70065	0.00040869	-0.11012	-6.4235E-05	0.59053	0.00034445	583.2958215491328	24.49	0.41802	24.49	24.307	24.725	0					12	7	3	0	0	0	0.0077828	1	8771	8771		139.78	86.378	1	40555000			8729	3558	4839	4877	8461	8461					0.0017961877545076277
EERQKYLEA	9	Unmodified	_EERQKYLEA_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	389.1996765136719	3	389.199777	1164.5775	0.031868	1.2403E-05	-0.33945	-0.00013211	-0.30758	-0.00011971	389.19966116379635	24.49	0.26107	24.49	24.36	24.621	0					7	4	2	0	0	0	0.25384	1	8794	8794		35.612	21.442	1	13033000			8730	3558	4839	4877	8462	8462					0.0017961877545076277
EERQKYLEA	9	Unmodified	_EERQKYLEA_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	583.2963256835938	2	583.296027	1164.5775	0.57127	0.00033322	0.095451	5.5676E-05	0.66672	0.0003889	583.2960668249573	25.009	0.41577	24.633	24.452	24.868	-0.37521					21	7	4	0	0	0	0.0077828	1	8988	8988		139.78	78.18	1	493790000			8731	3558	4839	4877	8463	8463					0.0017961877545076277
EERQKYLEA	9	Unmodified	_EERQKYLEA_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	389.1996154785156	3	389.199777	1164.5775	0.13273	5.1658E-05	-0.18279	-7.1141E-05	-0.05006	-1.9483E-05	389.19968814975385	25.009	0.25963	24.633	24.504	24.764	-0.37521					12	4	3	0	0	0	0.069943	1	8989	8989		64.927	38.929	1	121630000			8732	3558	4839	4877	8464	8464					0.0017961877545076277
EERQKYLEA	9	Unmodified	_EERQKYLEA_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1165.5853271484375	1	1165.58478	1164.5775	0.54623	0.00063668	-0.11294	-0.00013164	0.4333	0.00050504	1165.5846376481584	25.009	0.20764	24.633	24.504	24.712	-0.37521					5	3	2	0	0	0	0.0045271	1	9014	9014		168.54	85.109	1	21659000			8733	3558	4839	4877	8465	8465					0.0017961877545076277
EERQKYLEA	9	Unmodified	_EERQKYLEA_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	583.296142578125	2	583.296027	1164.5775	0.4174	0.00024347	0.12151	7.0878E-05	0.53891	0.00031434	583.2961087551192	24.554	0.62456	24.471	24.289	24.913	-0.083694					28	11	5	0	0	0	0.0077828	1	8707	8707		139.78	84.279	1	98966000			8734	3558	4839	4877	8466	8466					0.0017961877545076277
EERQKYLEA	9	Unmodified	_EERQKYLEA_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	389.5343017578125	3	389.199777	1164.5775	-0.084712	-3.297E-05	0.064943	2.5276E-05	-0.019769	-7.694E-06	389.199736924422	24.555	0.41644	24.471	24.289	24.705	-0.083694					19	7	4	0	0	0	0.14268	1	8715	8715		49.742	28.871	1	57821000			8735	3558	4839	4877	8467	8467					0.0017961877545076277
EERQKYLEA	9	Unmodified	_EERQKYLEA_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	583.2962036132812	2	583.296027	1164.5775	0.46732	0.00027259	-0.026822	-1.5645E-05	0.4405	0.00025694	583.2960309932885	24.845	0.57144	24.576	24.393	24.965	-0.26881					20	10	4	0	0	0	0.0077828	1	8775	8775		139.78	88.152	1	48879000			8736	3558	4839	4877	8468	8468					0.0017961877545076277
EERQKYLEA	9	Unmodified	_EERQKYLEA_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	389.1994323730469	3	389.199777	1164.5775	0.23654	9.2061E-05	-0.14417	-5.611E-05	0.092371	3.5951E-05	389.1995114811812	24.846	0.36345	24.578	24.393	24.757	-0.26881					16	6	4	0	0	0	0.25384	1	8778	8778		35.612	19.463	1	16525000			8737	3558	4839	4877	8469	8469					0.0017961877545076277
EERQPSPEP	9	Unmodified	_EERQPSPEP_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2;ENST00000507947.5_1_4:76580183-76582836:-|nuORF	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MSMS	HCT116MG_D190212_S2	2	534.75146484375	2	534.751453	1067.48835	0.44311	0.00023696	-0.043954	-2.3505E-05	0.39916	0.00021345	534.751420494474	19.798	0.36334	19.423	19.194	19.558	-0.37503					15	6	3	0	0	0	0.030039	1	6885	6885		86.332	34.702	1	9318000			8738	3583	4840	4878	8470	8470					-0.042692161840932386
EERQPSPEP	9	Unmodified	_EERQPSPEP_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2;ENST00000507947.5_1_4:76580183-76582836:-|nuORF	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	534.751453	1067.48835	0.43216	0.0002311	1.4843	0.00079374	1.9165	0.0010248	534.7521865791964	19.095	0.25977	19.164	19.083	19.343	0.069157	-0.094984	0.0014262	NaN	86.332	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10893000			8739	3583	4840	4878							-0.042692161840932386
EERQRPGSP	9	Unmodified	_EERQRPGSP_					0	0	0		ENST00000495036.5_1_7:120629669-120690919:+|nuORF	ENST00000495036.5_1_7:120629669-120690919:+|nuORF	ENST00000495036.5_1_7:120629669-120690919:+|nuORF	MSMS	HCT116MG_D190212_S4	4	528.26416015625	2	528.265062	1054.51557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.812	1	21.594	21.094	22.094	-0.21832								0	0	0	0.64498	1	7552	7552		21.747	0.20967	1				8740	8375	4841	4879	8471	8471					-0.009506878530373797
EERRIKEIV	9	Unmodified	_EERRIKEIV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000205955|Q58FG0|HSP90AA5P	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S1	1	391.2311706542969	3	391.2313	1170.67207	-0.10571	-4.1359E-05	0.02289	8.9552E-06	-0.082824	-3.2403E-05	391.2312895603597	25.664	0.31372	25.664	25.509	25.823	0					8	5	2	0	0	0	0.055677	1	9255	9255		57.249	27.812	1	9353300			8741	1401	4842	4880	8472	8472					0.09356177317408765
EERRIKEIV	9	Unmodified	_EERRIKEIV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000205955|Q58FG0|HSP90AA5P	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S1	1	586.3435668945312	2	586.343312	1170.67207	0.58334	0.00034204	-0.15779	-9.2518E-05	0.42556	0.00024952	586.3431913512908	25.692	0.20916	25.692	25.561	25.77	0					6	3	2	0	0	0	0.13387	1	9261	9261		51.488	20.22	1	13413000			8742	1401	4842	4880	8473	8473					0.09356177317408765
EERRIKEIV	9	Unmodified	_EERRIKEIV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000205955|Q58FG0|HSP90AA5P	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S2	2	586.3433837890625	2	586.343312	1170.67207	0.76902	0.00045091	-0.4623	-0.00027107	0.30673	0.00017985	586.3429989486015	26.153	0.25925	25.792	25.662	25.921	-0.36164					10	4	3	0	0	0	0.013592	1	9460	9460		104.48	46.762	1	55430000			8743	1401	4842	4880	8474	8474					0.09356177317408765
EERRIKEIV	9	Unmodified	_EERRIKEIV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000205955|Q58FG0|HSP90AA5P	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S2	2	391.23114013671875	3	391.2313	1170.67207	0.32677	0.00012784	-0.44763	-0.00017513	-0.12086	-4.7286E-05	391.23113990002855	26.153	0.31096	25.792	25.662	25.972	-0.36164					12	5	3	0	0	0	0.011082	1	9469	9469		91.085	51.872	1	53244000			8744	1401	4842	4880	8475	8475					0.09356177317408765
EERRINHTA	9	Unmodified	_EERRINHTA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;CLCN7|p.F186Cfs*6|1|0.07|ENSG00000103249|chr16:1460454-1460457|GAAG/-|frameshift_variant	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S2	2	376.1978759765625	3	375.863499	1124.56867	-0.31828	-0.00011963	-0.24308	-9.1364E-05	-0.56136	-0.00021099	375.8631766251331	10.594	0.245	10.32	10.191	10.436	-0.27365					15	9	2	0	0	0	0.66233	1	3352	3352		7.609	3.0801	1	365210			8745	1884	4843	4881	8476	8476					0.011366899296263
EERRKWFEA	9	Unmodified	_EERRKWFEA_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S1	1	417.5472717285156	3	417.5474	1249.62037	-0.1122	-4.6848E-05	0.14997	6.2621E-05	0.037774	1.5773E-05	417.547407487627	31.98	0.41721	31.98	31.753	32.17	0					16	6	4	0	0	0	0.10244	1	11775	11775		46.022	31.804	1	50806000			8746	1666	4844	4882	8477	8477					0.005544336235288938
EERRKWFEA	9	Unmodified	_EERRKWFEA_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S1	1	625.8173217773438	2	625.817461	1249.62037	0.59497	0.00037234	-0.19557	-0.00012239	0.3994	0.00024995	625.8174491635326	31.935	0.31305	31.935	31.805	32.118	0					12	5	3	0	0	0	0.013592	1	11781	11781		104.48	69.552	1	24801000			8747	1666	4844	4882	8478	8478					0.005544336235288938
EERRKWFEA	9	Unmodified	_EERRKWFEA_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S2	2	417.5475158691406	3	417.5474	1249.62037	-0.048393	-2.0206E-05	-0.041456	-1.731E-05	-0.089849	-3.7516E-05	417.547384498797	32.251	0.46804	32.021	31.838	32.306	-0.23009					28	8	5	0	0	0	0.077982	1	11928	11928		49.527	49.527	1	562230000			8748	1666	4844	4882	8479	8479					0.005544336235288938
EERRKWFEA	9	Unmodified	_EERRKWFEA_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S2	2	625.8178100585938	2	625.817461	1249.62037	0.4718	0.00029526	-0.091923	-5.7527E-05	0.37988	0.00023773	625.817403748408	32.251	0.52032	32.021	31.838	32.359	-0.23009					29	9	5	0	0	0	0.0045072	1	11929	11929		143.21	143.21	1	448660000			8749	1666	4844	4882	8480	8480					0.005544336235288938
EERRKWFEA	9	Unmodified	_EERRKWFEA_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S3	3	417.5475769042969	3	417.5474	1249.62037	0.025047	1.0458E-05	0.02446	1.0213E-05	0.049507	2.0672E-05	417.547385136378	32.403	0.6251	32.124	31.89	32.515	-0.27841					27	11	4	0	0	0	0.10244	1	11857	11857		46.022	24.432	1	76342000			8750	1666	4844	4882	8481	8481					0.005544336235288938
EERRKWFEA	9	Unmodified	_EERRKWFEA_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S3	3	625.8175048828125	2	625.817461	1249.62037	0.38824	0.00024297	0.15797	9.8857E-05	0.5462	0.00034182	625.8174643717858	32.401	0.4688	32.123	31.942	32.41	-0.27841					21	8	4	0	0	0	0.0095327	1	11858	11858		114.5	76.321	1	49064000			8751	1666	4844	4882	8482	8482					0.005544336235288938
EERRKWFEA	9	Unmodified	_EERRKWFEA_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S4	4	417.5474853515625	3	417.5474	1249.62037	0.11776	4.9172E-05	0.01091	4.5555E-06	0.12867	5.3727E-05	417.5473410156944	32.527	0.3634	32.148	31.949	32.312	-0.37924					18	6	4	0	0	0	0.14362	1	11847	11847		39.213	24.256	1	23389000			8752	1666	4844	4882	8483	8483					0.005544336235288938
EERRKWFEA	9	Unmodified	_EERRKWFEA_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S4	4	625.8173217773438	2	625.817461	1249.62037	0.29815	0.00018659	0.17895	0.00011199	0.4771	0.00029858	625.8174251669234	32.528	0.31142	32.149	31.949	32.26	-0.37924					12	5	3	0	0	0	0.040372	1	11850	11850		79.427	56.691	1	11537000			8753	1666	4844	4882	8484	8484					0.005544336235288938
EERRLRLQEA	10	Unmodified	_EERRLRLQEA_					0	0	0		VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant;ENSG00000075399|ENST00000389386|VPS9D1;nc|ENSG00000075399|Q9Y2B5-2|VPS9D1;VPS9D1|p.D265Gfs*127|1|0.45|ENSG00000075399|chr16:89711366-89711367|-/C|frameshift_variant;VPS9D1|p.P316Rfs*93|1|0.12|ENSG00000075399|chr16:89710897-89710897|G/-|frameshift_variant	VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant	VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	650.35986328125	2	650.360025	1298.7055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.936	1	43.562	43.062	44.062	-0.37373								0	0	0	0.95351	1	16168	16168		3.9444	0	1				8754	1315	4845	4883	8485	8485					0.06809179089304962
EERRRRMEDPN	11	Unmodified	_EERRRRMEDPN_					0	0	0			REV__ENSG00000114030|ENST00000344337|KPNA1	REV__ENSG00000114030|ENST00000344337|KPNA1	MSMS	HCT116MG_D190212_S1	1	496.57562255859375	3	496.575912	1486.70591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.987	1	17.987	17.487	18.487	0								0	0	0	0.95196	1	6156	6156		2.4348	0.18206	1		+		8755	11501	4846	4884	8486	8486					-0.017977692531303546
EERRSFEFMEK	11	Unmodified	_EERRSFEFMEK_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MSMS	HCT116MG_D190212_S4	4	744.3541259765625	2	744.351008	1486.68746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.347	1	48.985	48.485	49.485	-0.36243								0	0	0	0.9465	1	18301	18301		8.1555	2.8586	1		+		8756	13535	4847	4885	8487	8487					-0.0364132394772696
EERRSPPAP	9	Unmodified	_EERRSPPAP_					0	0	0		nc|ENSG00000075426|P15408-3|FOSL2;nc|ENSG00000075426|P15408-2|FOSL2;ENSG00000075426|ENST00000264716|FOSL2	nc|ENSG00000075426|P15408-3|FOSL2	nc|ENSG00000075426|P15408-3|FOSL2	MSMS	HCT116MG_D190212_S3	3	519.770263671875	2	519.76998	1037.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.679	1	16.764	16.264	17.264	0.084808								0	0	0	0.2496	1	5552	5552		43.772	17.504	1				8757	1318	4848	4886	8488	8488					0.008145001523189421
EERRVKEVV	9	Unmodified	_EERRVKEVV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S1	1	572.32763671875	2	572.327662	1142.64077	0.21051	0.00012048	-0.24093	-0.00013789	-0.030415	-1.7407E-05	572.3276130430371	19.369	0.2081	19.369	19.287	19.495	0					7	3	3	0	0	0	0.5825	1	6736	6736		12.241	2.8575	1	6077700			8758	1617	4849	4887	8489	8489					0.07515604283321409
EERRVKEVV	9	Unmodified	_EERRVKEVV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S1	1	381.8876037597656	3	381.887533	1142.64077	-0.2603	-9.9404E-05	0.36735	0.00014029	0.10705	4.0882E-05	381.88770607211944	19.365	0.1561	19.365	19.287	19.443	0					4	2	2	0	0	0	0.55732	1	6739	6739		13.615	2.7159	1	4162600			8759	1617	4849	4887	8490	8490					0.07515604283321409
EERRVKEVV	9	Unmodified	_EERRVKEVV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S2	2	572.3278198242188	2	572.327662	1142.64077	0.28088	0.00016076	0.32096	0.0001837	0.60185	0.00034445	572.327628679082	20.166	0.20804	19.791	19.661	19.869	-0.37503					6	3	2	0	0	0	0.014376	1	7043	7043		110.79	63.198	1	25754000			8760	1617	4849	4887	8491	8491					0.07515604283321409
EERRVKEVV	9	Unmodified	_EERRVKEVV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S2	2	381.8873596191406	3	381.887533	1142.64077	-0.21246	-8.1137E-05	-0.3687	-0.0001408	-0.58116	-0.00022194	381.8874439506667	20.166	0.26035	19.791	19.661	19.922	-0.37503					10	4	3	0	0	0	0.17423	1	7060	7060		43.982	14.141	1	15922000			8761	1617	4849	4887	8492	8492					0.07515604283321409
EERRYLQSA	9	Unmodified	_EERRYLQSA_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-MSMS	HCT116MG_D190212_S1	1	576.2939453125	2	576.293819	1150.57309	0.43159	0.00024872	-0.2031	-0.00011705	0.22849	0.00013168	576.2934750944363	22.185	0.20901	22.185	22.011	22.22	0					7	3	3	0	0	0	0.068828	1	7849	7849		65.474	21.701	1	6292200			8762	4441	4850	4888	8493	8493					0.003821543525418747
EERRYLQSA	9	Unmodified	_EERRYLQSA_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-MSMS	HCT116MG_D190212_S2	2	576.2940673828125	2	576.293819	1150.57309	0.40655	0.00023429	0.049401	2.847E-05	0.45595	0.00026276	576.2938380795537	22.753	0.31195	22.368	22.206	22.518	-0.38521					9	5	2	0	0	0	0.029121	1	8085	8085		87.258	37.731	1	56520000			8763	4441	4850	4888	8494	8494					0.003821543525418747
EERRYLQSA	9	Unmodified	_EERRYLQSA_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-MSMS	HCT116MG_D190212_S2	2	384.53155517578125	3	384.531638	1150.57309	-0.032821	-1.2621E-05	-0.1623	-6.241E-05	-0.19512	-7.5031E-05	384.53154279576626	22.774	0.2082	22.388	22.258	22.466	-0.3852					5	3	2	0	0	0	0.12205	1	8098	8098		42.312	23.591	1	14614000			8764	4441	4850	4888	8495	8495					0.003821543525418747
EERRYLQSA	9	Unmodified	_EERRYLQSA_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-MSMS	HCT116MG_D190212_S3	3	576.7945556640625	2	576.293819	1150.57309	0.44508	0.0002565	0.25241	0.00014546	0.69749	0.00040196	576.2941234924493	22.05	0.2603	22.051	21.886	22.146	0.00074577					10	4	3	0	0	0	0.012531	1	7720	7720		107.1	61.36	1	12857000			8765	4441	4850	4888	8496	8496					0.003821543525418747
EERRYLQSA	9	Unmodified	_EERRYLQSA_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-MSMS	HCT116MG_D190212_S3	3	384.531494140625	3	384.531638	1150.57309	-0.07755	-2.982E-05	0.09818	3.7753E-05	0.02063	7.933E-06	384.5315440987883	22.051	0.20813	22.052	21.938	22.146	0.00074577					5	3	2	0	0	0	0.035349	1	7725	7725		65.474	26.261	1	5680600			8766	4441	4850	4888	8497	8497					0.003821543525418747
EERSPSWISA	10	Unmodified	_EERSPSWISA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	581.2807006835938	2	581.280377	1160.5462	0.31553	0.00018341	0.087741	5.1002E-05	0.40327	0.00023441	581.2804106378703	39.418	0.39819	39.418	39.259	39.657	0					22	7	4	0	0	0	0.014847	1	14768	14768		132.38	88.398	1	191520000			8767	3119	4851	4889	8498	8498					-0.027649542586459575
EERSPSWISA	10	Unmodified	_EERSPSWISA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	581.281005859375	2	581.280377	1160.5462	0.57707	0.00033544	-0.051136	-2.9725E-05	0.52594	0.00030572	581.2803396171638	39.38	0.87011	39.303	39.07	39.94	-0.077835					39	16	4	0	0	0	0.017977	1	14800	14800		124.95	73.538	1	1661399999.9999998			8768	3119	4851	4889	8499	8499					-0.027649542586459575
EERSPSWISA	10	Unmodified	_EERSPSWISA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	1161.5538330078125	1	1161.55348	1160.5462	0.59813	0.00069476	-0.18048	-0.00020964	0.41765	0.00048512	1161.553035949654	39.409	0.30632	39.331	39.122	39.428	-0.077835					12	5	3	0	0	0	0.00034544	1	14822	14822		189.73	104.09	1	88350000			8769	3119	4851	4889	8500	8500					-0.027649542586459575
EERSPSWISA	10	Unmodified	_EERSPSWISA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	1161.551513671875	1	1161.55348	1160.5462	0.41085	0.00047722	-0.98223	-0.0011409	-0.57138	-0.00066369	1162.555737522373	39.665	0.069794	39.364	39.322	39.391	-0.30137					8	5	2	0	0	0	0.0064345	1	14727	14727		163.69	93.355	1	20688000			8770	3119	4851	4889	8501	8501					-0.027649542586459575
EERSPSWISA	10	Unmodified	_EERSPSWISA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S3	3	581.2805786132812	2	581.280377	1160.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.264	1	39.963	39.463	40.463	-0.30153								0	0	0	0.76396	1	14942	14942		33.445	10.709	1				8771	3119	4851	4889	8502	8502					-0.027649542586459575
EERSPSWISA	10	Unmodified	_EERSPSWISA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	581.281005859375	2	581.280377	1160.5462	0.24478	0.00014228	-0.064284	-3.7367E-05	0.18049	0.00010492	581.2803576045358	39.811	0.60902	39.432	39.293	39.902	-0.37936					137	46	4	0	0	0	0.044769	1	14575	14575		91.085	57.64	1	370450000			8772	3119	4851	4889	8503	8503					-0.027649542586459575
EERSWFREA	9	Unmodified	_EERSWFREA_					0	0	0		ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000106799|ENST00000374994|TGFBR1;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000135503|P36896-4|ACVR1B	ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant	ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	605.2598876953125	2	605.285994	1208.55744	0.84263	0.00051003	-1.3884	-0.00084039	-0.5458	-0.00033036	605.7874320714458	36.433	0.25962	36.305	36.174	36.434	-0.12799					6	4	2	0	0	0	0.062126	1	13617	13617		68.76	40.265	1	17265000			8773	32	4852	4890	8504	8504					-0.038501321645071584
EERSWFREA	9	Unmodified	_EERSWFREA_					0	0	0		ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000106799|ENST00000374994|TGFBR1;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000135503|P36896-4|ACVR1B	ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant	ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	403.859619140625	3	403.859755	1208.55744	-0.10713	-4.3264E-05	-0.058615	-2.3672E-05	-0.16574	-6.6936E-05	403.85970649132867	36.66	0.2082	36.359	36.249	36.457	-0.30113					5	3	2	0	0	0	0.55732	1	13578	13578		9.7643	4.8672	1	4105400			8774	32	4852	4890	8505	8505					-0.038501321645071584
EERSWFREA	9	Unmodified	_EERSWFREA_					0	0	0		ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000106799|ENST00000374994|TGFBR1;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000135503|P36896-4|ACVR1B	ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant	ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	605.78759765625	2	605.285994	1208.55744	0.41745	0.00025268	-0.70012	-0.00042378	-0.28267	-0.0001711	605.2853555231483	36.654	0.31248	36.353	36.145	36.457	-0.30113					7	5	2	0	0	0	0.15854	1	13572	13572		51.488	26.497	1	4053700			8775	32	4852	4890	8506	8506					-0.038501321645071584
EERSWFREA	9	Unmodified	_EERSWFREA_					0	0	0		ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000106799|ENST00000374994|TGFBR1;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000135503|P36896-4|ACVR1B	ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant	ACVR1B|p.T377Pfs*16|2|0.35|ENSG00000135503|chr12:51985337-51985337|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	605.285994	1208.55744	1.105	0.00066882	-0.86685	-0.00052469	0.23811	0.00014413	605.7872423013672	36.846	0.15564	36.461	36.331	36.487	-0.38486	0.088128	-7.3128E-05	NaN	68.76	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2212200			8776	32	4852	4890							-0.038501321645071584
EERTFHIF	8	Unmodified	_EERTFHIF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7701416015625	2	539.769448	1077.52434	0.47457	0.00025616	-0.033418	-1.8038E-05	0.44115	0.00023812	539.7692358314334	45.759	0.25629	45.657	45.556	45.812	-0.1014					7	4	2	0	0	0	0.60054	1	17431	17431		32.305	10.559	1	21511000			8777	1691	4853	4891	8507	8507					-0.01131714216603541
EERTQGRR	8	Unmodified	_EERTQGRR_					0	0	0			REV__ENST00000261569.11_1_5:66300453-66300594:+|nuORF	REV__ENST00000261569.11_1_5:66300453-66300594:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	515.76953125	2	516.270678	1030.5268	0.28974	0.00014958	0.28372	0.00014648	0.57345	0.00029606	516.2709752999815	40.638	0.23582	40.26	40.182	40.418	-0.37828					6	4	2	0	0	0	0.31097	1	14944	14944		7.2892	2.5332	1	2918400	+		8778	14628	4854	4892	8508	8508					0.01276134241084037
EERVINEEY	9	Unmodified	_EERVINEEY_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	HCT116MG_D190212_S1	1	590.77734375	2	590.777667	1179.54078	0.59484	0.00035142	-0.28444	-0.00016804	0.3104	0.00018338	590.7774617544658	30.166	0.35029	30.166	29.997	30.347	0					13	6	3	0	0	0	0.003706	1	11058	11058		155.03	86.945	1	39732000			8779	1822	4855	4893	8509	8509					-0.041806778411455525
EERVINEEY	9	Unmodified	_EERVINEEY_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	HCT116MG_D190212_S2	2	590.7775268554688	2	590.777667	1179.54078	0.31996	0.00018903	0.039435	2.3297E-05	0.3594	0.00021232	590.7776947087563	30.447	0.41059	30.162	30.028	30.439	-0.28453					19	7	4	0	0	0	0.0041644	1	11198	11198		148.27	79.163	1	229970000			8780	1822	4855	4893	8510	8510					-0.041806778411455525
EERVINEEY	9	Unmodified	_EERVINEEY_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	HCT116MG_D190212_S3	3	590.7783813476562	2	590.777667	1179.54078	0.50513	0.00029842	-0.054747	-3.2344E-05	0.45038	0.00026607	590.7775602115453	30.605	0.49477	30.355	30.225	30.72	-0.24946					36	14	4	0	0	0	0.0043772	1	11116	11116		145.13	73.207	1	129560000			8781	1822	4855	4893	8511	8511					-0.041806778411455525
EERVINEEY	9	Unmodified	_EERVINEEY_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	HCT116MG_D190212_S4	4	590.7780151367188	2	590.777667	1179.54078	0.66765	0.00039443	0.093364	5.5158E-05	0.76102	0.00044959	590.7777174937044	30.717	0.39193	30.353	30.225	30.616	-0.36416					27	11	4	0	0	0	0.0058997	1	11091	11091		129.77	67.2	1	37982000			8782	1822	4855	4893	8512	8512					-0.041806778411455525
EERVKQLV	8	Unmodified	_EERVKQLV_					0	0	0			REV__nc|ENSG00000095596|O43174-2|CYP26A1	REV__nc|ENSG00000095596|O43174-2|CYP26A1	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7929382324219	2	500.792924	999.571294	0.3454	0.00017297	-0.089884	-4.5013E-05	0.25551	0.00012796	500.79285723909965	30.904	0.41414	30.637	30.456	30.87	-0.26704					16	7	3	0	0	0	0.060005	1	11386	11386		112.59	16.308	1	67802000	+		8783	11029	4856	4894	8513	8513					0.07149145334574314
EERVQAVV	8	Unmodified	_EERVQAVV_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	465.2561340332031	2	465.256174	928.497795	0.52461	0.00024408	-0.3241	-0.00015079	0.2005	9.3286E-05	465.2560000229976	29.615	0.25846	29.314	29.185	29.444	-0.30095					6	4	2	0	0	0	0.41924	1	10887	10887		48.346	2.3249	1	8807000			8784	2459	4857	4895	8514	8514					0.03068596892092046
EERVRRAGG	9	Unmodified	_EERVRRAGG_					0	0	0		ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENST00000467498.5_1_2:97215494-97216349:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.780029296875	2	515.281046	1028.54754	0.15876	8.1804E-05	0.84305	0.00043441	1.0018	0.00051621	515.282323663748	31.352	0.52238	31.083	30.805	31.327	-0.26862					29	9	5	0	0	0	0.26536	1	11497	11497		34.402	1.616	1	38086000			8785	8117	4858	4896	8515	8515					0.034407246207592834
EERWAFHPC	9	Unmodified	_EERWAFHPC_					0	0	0		PLA2R1|p.P660A|1|0.07|ENSG00000153246|chr2:159987215-159987215|G/C|missense_variant	PLA2R1|p.P660A|1|0.07|ENSG00000153246|chr2:159987215-159987215|G/C|missense_variant	PLA2R1|p.P660A|1|0.07|ENSG00000153246|chr2:159987215-159987215|G/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	587.7586669921875	2	587.758558	1173.50256	0.44381	0.00026085	0.20091	0.00011809	0.64472	0.00037894	587.7586109099132	21.904	0.15659	21.519	21.427	21.583	-0.38503					4	2	2	0	0	0	0.37539	1	7756	7756		24.021	2.4836	1	10621000			8786	9753	4859	4897	8516	8516					-0.07724842236780205
EERWNRLQEIN	11	Unmodified	_EERWNRLQEIN_					0	0	0		UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.L985Wfs*4|1|0.07|ENSG00000152818|chr6:144462753-144462754|-/GGGC|frameshift_variant;UTRN|p.K1847Ffs*66|1|0.07|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant	UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant	UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	496.2757263183594	3	496.251423	1485.73244	0.31183	0.00015475	-0.44175	-0.00021922	-0.12992	-6.4472E-05	496.2513333874547	16.395	0.20807	16.395	16.265	16.473	0					5	3	2	0	0	0	0.36579	1	5527	5527		3.8459	3.3914	1	5092500			8787	4164;18689	4860	4898	8517	8517					0.009002429098700304
EERYFISH	8	Unmodified	_EERYFISH_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S1	1	540.7593383789062	2	540.759081	1079.50361	0.64472	0.00034864	-0.15886	-8.5906E-05	0.48586	0.00026273	540.7588729726425	29.485	0.41667	29.485	29.269	29.685	0					16	7	3	0	0	0	0.024644	1	10770	10770		206.75	91.057	1	68282000			8788	5216	4861	4899	8518	8518					-0.032963045962333126
EERYFISH	8	Unmodified	_EERYFISH_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S1	1	361.1758728027344	3	360.841813	1079.50361	0.040978	1.4787E-05	-0.091392	-3.2978E-05	-0.050414	-1.8191E-05	360.84176252386584	29.496	0.26027	29.496	29.321	29.581	0					13	4	4	0	0	0	0.20876	1	10783	10783		61.602	35.334	1	28073000			8789	5216	4861	4899	8519	8519					-0.032963045962333126
EERYFISH	8	Unmodified	_EERYFISH_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S2	2	540.7593383789062	2	540.759081	1079.50361	0.45925	0.00024834	0.036202	1.9576E-05	0.49545	0.00026792	540.7589960743658	29.874	0.41302	29.573	29.392	29.805	-0.30095					17	7	3	0	0	0	0.01698	1	10944	10944		191.38	87.632	1	255910000			8790	5216	4861	4899	8520	8520					-0.032963045962333126
EERYFISH	8	Unmodified	_EERYFISH_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S2	2	360.8418273925781	3	360.841813	1079.50361	-0.20083	-7.2467E-05	0.12196	4.4009E-05	-0.078866	-2.8458E-05	360.84182031429276	29.874	0.41302	29.573	29.392	29.805	-0.30095					12	7	3	0	0	0	0.20876	1	10956	10956		61.602	35.334	1	111570000			8791	5216	4861	4899	8521	8521					-0.032963045962333126
EERYFISH	8	Unmodified	_EERYFISH_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S2	2	1080.5123291015625	1	1080.51089	1079.50361	0.43488	0.00046989	-0.56619	-0.00061178	-0.13131	-0.00014188	1080.5113879746868	29.874	0.15502	29.573	29.444	29.599	-0.30095					4	2	2	0	0	0	0.024644	1	10969	10969		206.75	78.383	1	14401000			8792	5216	4861	4899	8522	8522					-0.032963045962333126
EERYFISH	8	Unmodified	_EERYFISH_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S3	3	540.75927734375	2	540.759081	1079.50361	0.62938	0.00034034	0.00015229	8.2353E-08	0.62953	0.00034043	540.7589231443129	29.93	0.47799	29.694	29.5	29.978	-0.23655					22	8	4	0	0	0	0.0166	2	10889	10844;10889		223.06	107.37	1	79177000			8793	5216	4861	4899	8523;8524	8524					-0.032963045962333126
EERYFISH	8	Unmodified	_EERYFISH_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S3	3	360.84185791015625	3	360.841813	1079.50361	0.078299	2.8253E-05	-0.12244	-4.4181E-05	-0.044141	-1.5928E-05	360.8417207839848	29.925	0.42332	29.689	29.555	29.978	-0.23655					13	7	3	0	0	0	0.20876	1	10894	10894		61.602	35.334	1	31407000			8794	5216	4861	4899	8525	8525					-0.032963045962333126
EERYFISH	8	Unmodified	_EERYFISH_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S4	4	540.7593994140625	2	540.759081	1079.50361	0.41276	0.0002232	0.082618	4.4676E-05	0.49538	0.00026788	540.7590408760327	30.107	0.31203	29.75	29.597	29.909	-0.35711					14	5	3	0	0	0	0.024748	1	10898	10898		214.41	93.959	1	22702000			8795	5216	4861	4899	8526	8526					-0.032963045962333126
EERYFISH	8	Unmodified	_EERYFISH_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;ENST00000459969.5_1_2:10262865-10264033:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S4	4	360.841796875	3	360.841813	1079.50361	-0.058539	-2.1123E-05	-0.10706	-3.863E-05	-0.16559	-5.9754E-05	360.84173018931165	30.084	0.26012	29.727	29.597	29.857	-0.3571					10	4	3	0	0	0	0.26254	1	10904	10904		53.404	27.136	1	12614000			8796	5216	4861	4899	8527	8527					-0.032963045962333126
EESAVTVMF	9	Unmodified	_EESAVTVMF_					0	0	0		nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-3|MAT2B	nc|ENSG00000038274|Q9NZL9-3|MAT2B	MULTI-MSMS	HCT116MG_D190212_S2	2	1012.4667358398438	1	1012.46557	1011.4583	0.66571	0.00067401	0.1831	0.00018538	0.84881	0.00085939	1012.4660912829404	54.722	0.25638	54.533	54.405	54.661	-0.1894					7	4	2	0	0	0	0.043314	1	21108	21108		77.984	47.76	1	28307000			8797	992	4862	4900	8528	8528					-0.046972911736247625
EESCSHEC	8	Unmodified	_EESCSHEC_					0	0	0		MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	462.1469421386719	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.815	1	39.513	39.013	40.013	-0.30137								0	0	0	0.8837	1	14770	14770		0.79363	0	1				8798	5778	4863	4901	8529	8529					-0.18456704084189823
EESEGHQSP	9	Unmodified	_EESEGHQSP_					0	0	0			REV__ENST00000553930.5_1_14:24909736-24911620:-|nuORF	REV__ENST00000553930.5_1_14:24909736-24911620:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	500.27142333984375	2	500.204335	998.394118	0.52573	0.00026297	0.63818	0.00031922	1.1639	0.00058219	500.20451639757044	24.15	0.2597	23.891	23.729	23.989	-0.25816					6	4	2	0	0	0	0.24622	1	8474	8474		11.64	0	1	1620600	+		8799	16441	4864	4902	8530	8530					-0.10514355006216647
EESEKLKSA	9	Unmodified	_EESEKLKSA_					0	0	0		ENST00000537880.1_1_12:110352249-110352588:+|nuORF;ENST00000551627.1_1_12:110350781-110354425:+|nuORF;ENSG00000139437|ENST00000405876|TCHP	ENST00000537880.1_1_12:110352249-110352588:+|nuORF	ENST00000537880.1_1_12:110352249-110352588:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.97552490234375	2	510.764029	1019.5135	0.26865	0.00013722	-0.0021732	-1.11E-06	0.26648	0.00013611	510.7640729350164	16.468	0.26033	16.126	15.996	16.256	-0.34183					6	4	2	0	0	0	0.031831	2	5560	5560;5568		84.522	10.501	1	4442700			8800	3627	4865	4903	8531;8532	8531					0.004528386184802002
EESFYGRQ	8	Unmodified	_EESFYGRQ_					0	0	0			REV__nc|ENSG00000178209|Q15149|PLEC	REV__nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7434997558594	2	508.227613	1014.44067	0.2685	0.00013646	-0.24047	-0.00012221	0.028029	1.4245E-05	508.2274166210237	21.668	0.41582	21.283	21.115	21.531	-0.38503					10	7	2	0	0	0	0.73076	1	7656	7656		19.439	1.304	1	12581000	+		8801	17228	4866	4904	8533	8533					-0.0659687038427137
EESGAVVVP	9	Unmodified	_EESGAVVVP_					0	0	0		nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MSMS	HCT116MG_D190212_S2	2	886.4511108398438	1	886.451639	885.444362	0.76023	0.0006739	0.013204	1.1705E-05	0.77343	0.00068561	886.4513721962646	37.001	0.51504	36.886	36.653	37.168	-0.11478					14	9	2	0	0	0	0.043314	1	13845	13845		77.984	25.716	1	21909000			8802	5326	4867	4905	8534	8534					-0.0029420061041491863
EESGAVVVP	9	Unmodified	_EESGAVVVP_					0	0	0		nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MSMS	HCT116MG_D190212_S3	3	886.4525756835938	1	886.451639	885.444362	0.83687	0.00074185	-0.43906	-0.0003892	0.39782	0.00035264	886.4512237779311	37.137	0.57245	36.835	36.613	37.185	-0.30137					19	10	2	0	0	0	0.065014	1	13742	13742		67.344	12.57	1	6030700			8803	5326	4867	4905	8535	8535					-0.0029420061041491863
EESGITNSA	9	Unmodified	_EESGITNSA_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S2	2	907.4010009765625	1	907.400332	906.393055	0.57782	0.00052431	-0.17377	-0.00015768	0.40405	0.00036664	907.4003094688027	21.775	0.3126	21.39	21.271	21.583	-0.38503					6	5	2	0	0	0	0.027492	1	7700	7700		88.904	34.13	1	4480700			8804	1618	4868	4906	8536	8536					-0.06388569375133102
EESGITNSA	9	Unmodified	_EESGITNSA_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L;CDC5L|p.Q359Cfs*22|1|0.06|ENSG00000096401|chr6:44408614-44408615|-/TG|frameshift_variant	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	HCT116MG_D190212_S3	3	907.4004516601562	1	907.400332	906.393055	0.60938	0.00055295	-0.5289	-0.00047993	0.080472	7.3021E-05	907.3994439573074	21.438	0.26481	21.456	21.323	21.588	0.018446					6	4	2	0	0	0	0.071351	1	7497	7497		64.236	30.134	1	4886700			8805	1618	4868	4906	8537	8537					-0.06388569375133102
EESGRTWGP	9	Unmodified	_EESGRTWGP_					0	0	0			REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant	REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	509.7333984375	2	509.733063	1017.45157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.186	1	20.977	20.477	21.477	-0.20959								0	0	0	0.58443	1	7299	7299		24.674	1.5255	1		+		8806	9850	4869	4907	8538	8538					-0.05645468010004606
EESHNRFSA	9	Unmodified	_EESHNRFSA_					0	0	0		ENST00000520536.1_1_8:22475798-22477192:+|nuORF;nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2;ENST00000521436.5_1_8:22475932-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	ENST00000520536.1_1_8:22475798-22477192:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	538.74169921875	2	538.741419	1075.46829	0.45247	0.00024377	0.29623	0.00015959	0.74871	0.00040336	538.7415989206984	20.536	0.31954	20.157	19.969	20.289	-0.37949					13	5	3	0	0	0	0.33364	1	7203	7203		27.223	16.399	1	27492000			8807	4391	4870	4908	8539	8539					-0.06642967124025745
EESIAHHY	8	Unmodified	_EESIAHHY_					0	0	0		COQ7|p.A140V|1|0.43|ENSG00000167186|chr16:19075772-19075772|C/T|missense_variant;nc|ENSG00000167186|Q99807-2|COQ7;ENST00000566049.5_1_16:19078961-19089477:+|nuORF;ENSG00000167186|ENST00000321998|COQ7	COQ7|p.A140V|1|0.43|ENSG00000167186|chr16:19075772-19075772|C/T|missense_variant	COQ7|p.A140V|1|0.43|ENSG00000167186|chr16:19075772-19075772|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	493.2223815917969	2	493.222331	984.430109	0.3213	0.00015847	0.19888	9.8093E-05	0.52018	0.00025657	493.2224047643994	20.695	0.26188	20.316	20.236	20.498	-0.37949					5	4	2	0	0	0	0.44783	1	7273	7273		45.75	21.076	1	9761800			8808	589	4871	4909	8540	8540					-0.06272853038717585
EESIAHHY	8	Unmodified	_EESIAHHY_					0	0	0		COQ7|p.A140V|1|0.43|ENSG00000167186|chr16:19075772-19075772|C/T|missense_variant;nc|ENSG00000167186|Q99807-2|COQ7;ENST00000566049.5_1_16:19078961-19089477:+|nuORF;ENSG00000167186|ENST00000321998|COQ7	COQ7|p.A140V|1|0.43|ENSG00000167186|chr16:19075772-19075772|C/T|missense_variant	COQ7|p.A140V|1|0.43|ENSG00000167186|chr16:19075772-19075772|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	493.2220764160156	2	493.222331	984.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.868	1	19.917	19.417	20.417	0.049109								0	0	0	0.8837	1	6839	6839		15.768	0.92995	1				8809	589	4871	4909	8541	8541					-0.06272853038717585
EESIDWTKIE	10	Unmodified	_EESIDWTKIE_					0	0	0		ENSG00000169223|ENST00000303127|LMAN2;ENST00000504071.1_1_5:176759089-176761465:-|nuORF	ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	MULTI-MSMS	HCT116MG_D190212_S1	1	626.356201171875	2	625.300975	1248.5874	0.76414	0.00047781	-2.9542	-0.0018473	-2.1901	-0.0013695	625.2989197984691	24.196	0.20974	24.196	24.098	24.307	0					8	3	3	0	0	0	0.86339	1	8633	8633		6.7232	0.51738	1	5503600			8810	5060	4872	4910	8542	8542					-0.026952380098464346
EESKLAPK	8	Unmodified	_EESKLAPK_					0	0	0			REV__nc|ENSG00000124214|O95793-2|STAU1	REV__nc|ENSG00000124214|O95793-2|STAU1	MULTI-SECPEP	HCT116MG_D190212_S3	3	450.7194519042969	2	451.2531	900.491647	0.047521	2.1444E-05	0.064742	2.9215E-05	0.11226	5.0659E-05	451.2530524948034	32.403	0.26072	32.124	31.942	32.202	-0.27841					7	4	2	0	0	0	0.31507	1	11826	11826		14.582	0	1	2833800	+		8811	11781	4873	4911	8543	8543					0.03742078660570769
EESKNEYAA	9	Unmodified	_EESKNEYAA_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10;TRIP10|p.P332Hfs*31|2|0.44|ENSG00000125733|chr19:6746034-6746034|C/-|frameshift_variant;TRIP10|p.L337Wfs*26|1|0.38|ENSG00000125733|chr19:6746048-6746048|C/-|frameshift_variant;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-MSMS	HCT116MG_D190212_S2	2	520.730224609375	2	520.730186	1039.44582	-0.12793	-6.6619E-05	0.33637	0.00017516	0.20843	0.00010854	520.7302276192877	18.554	0.20845	18.191	18.061	18.269	-0.36325					5	3	2	0	0	0	0.33687	1	6413	6413		26.884	12.302	1	19212000			8812	2903	4874	4912	8544	8544					-0.07232611312315385
EESKQKLVP	9	Unmodified	_EESKQKLVP_					0	0	0		ENSG00000114388|ENST00000232501|NPRL2;ENST00000467294.1_1_3:50386754-50386910:-|nuORF;ENST00000461020.5_1_3:50386114-50386910:-|nuORF;ENST00000487632.5_1_3:50386199-50386910:-|nuORF;nc|ENSG00000114388|Q8WTW4-2|NPRL2;ENST00000429366.5_1_3:50385517-50386910:-|nuORF	ENSG00000114388|ENST00000232501|NPRL2	ENSG00000114388|ENST00000232501|NPRL2	MULTI-MSMS	HCT116MG_D190212_S1	1	529.2976684570312	2	529.298039	1056.58152	0.3916	0.00020727	0.4114	0.00021775	0.80299	0.00042502	529.2980208794348	24.804	0.41829	24.804	24.464	24.882	0					15	7	3	0	0	0	0.077982	1	8903	8903		62.573	16.873	1	7562900			8813	2417	4875	4913	8545	8545					0.0554970826913177
EESKQKLVP	9	Unmodified	_EESKQKLVP_					0	0	0		ENSG00000114388|ENST00000232501|NPRL2;ENST00000467294.1_1_3:50386754-50386910:-|nuORF;ENST00000461020.5_1_3:50386114-50386910:-|nuORF;ENST00000487632.5_1_3:50386199-50386910:-|nuORF;nc|ENSG00000114388|Q8WTW4-2|NPRL2;ENST00000429366.5_1_3:50385517-50386910:-|nuORF	ENSG00000114388|ENST00000232501|NPRL2	ENSG00000114388|ENST00000232501|NPRL2	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2982788085938	2	529.298039	1056.58152	0.48632	0.00025741	-0.099134	-5.2472E-05	0.38719	0.00020494	529.2978890095783	25.315	0.62526	24.94	24.556	25.181	-0.37521					27	11	3	0	0	0	0.045679	1	9074	9074		76.825	31.125	1	60693000			8814	2417	4875	4913	8546	8546					0.0554970826913177
EESKQKLVP	9	Unmodified	_EESKQKLVP_					0	0	0		ENSG00000114388|ENST00000232501|NPRL2;ENST00000467294.1_1_3:50386754-50386910:-|nuORF;ENST00000461020.5_1_3:50386114-50386910:-|nuORF;ENST00000487632.5_1_3:50386199-50386910:-|nuORF;nc|ENSG00000114388|Q8WTW4-2|NPRL2;ENST00000429366.5_1_3:50385517-50386910:-|nuORF	ENSG00000114388|ENST00000232501|NPRL2	ENSG00000114388|ENST00000232501|NPRL2	MULTI-MSMS	HCT116MG_D190212_S3	3	529.799560546875	2	529.298039	1056.58152	0.47665	0.00025229	-0.026346	-1.3945E-05	0.4503	0.00023835	529.2979129659382	24.711	0.7284	24.627	24.185	24.913	-0.083694					31	13	3	0	0	0	0.040027	1	8761	8761		79.596	21.874	1	19896000			8815	2417	4875	4913	8547	8547					0.0554970826913177
EESKQKLVP	9	Unmodified	_EESKQKLVP_					0	0	0		ENSG00000114388|ENST00000232501|NPRL2;ENST00000467294.1_1_3:50386754-50386910:-|nuORF;ENST00000461020.5_1_3:50386114-50386910:-|nuORF;ENST00000487632.5_1_3:50386199-50386910:-|nuORF;nc|ENSG00000114388|Q8WTW4-2|NPRL2;ENST00000429366.5_1_3:50385517-50386910:-|nuORF	ENSG00000114388|ENST00000232501|NPRL2	ENSG00000114388|ENST00000232501|NPRL2	MULTI-SECPEP	HCT116MG_D190212_S4	4	529.2615356445312	2	529.298039	1056.58152	0.61798	0.0003271	-0.14103	-7.4645E-05	0.47695	0.00025245	529.297861474058	25.064	0.46776	24.785	24.434	24.902	-0.27958					19	8	3	0	0	0	0.18678	1	8817	8817		29.082	0	1	9822600			8816	2417	4875	4913	8548	8548					0.0554970826913177
EESKTFVSS	9	Unmodified	_EESKTFVSS_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S2	2	507.2433166503906	2	507.242929	1012.47131	0.47474	0.00024081	0.28608	0.00014511	0.76082	0.00038592	507.2430199829703	24.593	0.36519	24.213	24.03	24.396	-0.38003					11	6	3	0	0	0	0.05892	1	8825	8825		70.332	38.027	1	16551000			8817	6174	4876	4914	8549	8549					-0.03443136789894652
EESKTFVSS	9	Unmodified	_EESKTFVSS_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S3	3	507.24334716796875	2	507.242929	1012.47131	0.12863	6.5247E-05	0.72594	0.00036823	0.85457	0.00043348	507.2430818863711	24.096	0.46858	24.035	23.791	24.259	-0.061447					14	8	3	0	0	0	0.12205	1	8560	8560		53.833	17.706	1	9198600			8818	6174	4876	4914	8550	8550					-0.03443136789894652
EESLDPELQY	10	Unmodified	_EESLDPELQY_					0	0	0			REV__SENP2|p.P433Sfs*17|1|0.08|ENSG00000163904|chr3:185619352-185619353|-/AGTAGAAG|frameshift_variant	REV__SENP2|p.P433Sfs*17|1|0.08|ENSG00000163904|chr3:185619352-185619353|-/AGTAGAAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	611.7781372070312	2	611.777333	1221.54011	0.85537	0.00052329	0.36541	0.00022355	1.2208	0.00074684	611.777359991058	35.87	0.4636	35.742	35.555	36.019	-0.12799					20	8	4	0	0	0	0.59961	1	13461	13461		39.95	10.513	1	110470000	+		8819	12958	4877	4915	8551	8551					-0.06179517280838809
EESLESIRAA	10	Unmodified	_EESLESIRAA_					0	0	0		CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant;nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant	CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	552.7803344726562	2	552.78021	1103.54587	0.39496	0.00021832	-0.41838	-0.00023127	-0.023421	-1.2947E-05	552.7798852482316	33.858	0.36419	33.665	33.482	33.847	-0.19297					9	6	2	0	0	0	0.28966	1	12601	12601		51.415	13.24	1	33349000			8820	481	4878	4916	8552	8552					-0.0017637397850194247
EESLESIRAA	10	Unmodified	_EESLESIRAA_					0	0	0		CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant;nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant	CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7803955078125	2	552.78021	1103.54587	0.44484	0.0002459	-0.1595	-8.8167E-05	0.28534	0.00015773	552.7799844793512	34.087	0.2605	33.793	33.611	33.871	-0.29419					7	4	2	0	0	0	0.051175	1	12545	12545		86.332	32.499	1	9948100			8821	481	4878	4916	8553	8553					-0.0017637397850194247
EESLESIRAA	10	Unmodified	_EESLESIRAA_					0	0	0		CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant;nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant	CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	552.77978515625	2	552.78021	1103.54587	0.51732	0.00028596	-0.97153	-0.00053704	-0.45421	-0.00025108	552.7795393697909	34.187	0.31165	33.802	33.672	33.984	-0.38558					6	5	2	0	0	0	0.59588	1	12487	12487		28.495	8.08	1	2736600			8822	481	4878	4916	8554	8554					-0.0017637397850194247
EESLQFQRVK	10	Unmodified	_EESLQFQRVK_					0	0	0			REV__nc|ENSG00000065600|Q9H813-2|PACC1	REV__nc|ENSG00000065600|Q9H813-2|PACC1	MSMS	HCT116MG_D190212_S4	4	632.3375854492188	2	632.338227	1262.6619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.58	1	36.195	35.695	36.695	-0.38499								0	0	0	0.90475	1	13392	13392		14.838	0.93222	1		+		8823	17076	4879	4917	8555	8555					0.04107569592156324
EESMTNDKTA	10	Unmodified	_EESMTNDKTA_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	563.240234375	2	563.240061	1124.46557	0.42989	0.00024213	-0.14732	-8.2975E-05	0.28257	0.00015915	563.2400262333298	17.69	0.36541	17.333	17.127	17.493	-0.35647					15	6	4	0	0	0	0.049927	1	6049	6049		87.258	37.704	1	19110000			8824	438	4880	4918	8556	8556					-0.09168603363877992
EESMTNDKTA	10	Unmodified	_EESMTNDKTA_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	563.2406616210938	2	563.240061	1124.46557	0.26927	0.00015166	0.057654	3.2473E-05	0.32692	0.00018414	563.2400980759322	16.839	0.31228	16.923	16.756	17.068	0.084467					8	5	2	0	0	0	0.22442	1	5626	5626		57.249	29.62	1	3961500			8825	438	4880	4918	8557	8557					-0.09168603363877992
EESMTNDKTA	10	Unmodified	_EESMTNDKTA_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	563.240061	1124.46557	0.56483	0.00031814	-0.089961	-5.067E-05	0.47487	0.00026747	563.2402101736943	17.281	0.20863	17.281	17.15	17.359	0	0.10153	-1.1635E-05	NaN	87.258	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1831900			8826	438	4880	4918							-0.09168603363877992
EESPPGLTA	9	Unmodified	_EESPPGLTA_					0	0	0		ENST00000280098.8_1_2:139259536-139307756:+|nuORF	ENST00000280098.8_1_2:139259536-139307756:+|nuORF	ENST00000280098.8_1_2:139259536-139307756:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	900.4320678710938	1	900.430903	899.423627	0.92885	0.00083636	0.0099781	8.9846E-06	0.93882	0.00084535	900.43081230243	32.227	0.62383	31.997	31.735	32.359	-0.23009					23	11	3	0	0	0	0.016134	1	11887	11887		100.37	22.222	1	26634000			8827	6939	4881	4919	8558	8558					-0.03010790990094847
EESPPGLTA	9	Unmodified	_EESPPGLTA_					0	0	0		ENST00000280098.8_1_2:139259536-139307756:+|nuORF	ENST00000280098.8_1_2:139259536-139307756:+|nuORF	ENST00000280098.8_1_2:139259536-139307756:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	900.43212890625	1	900.430903	899.423627	0.80524	0.00072506	-0.0099275	-8.9391E-06	0.79531	0.00071612	900.4307650358829	32.384	0.78114	32.106	31.786	32.567	-0.27841					33	14	3	0	0	0	0.016134	1	11796	11796		100.37	29.238	1	23283000			8828	6939	4881	4919	8559	8559					-0.03010790990094847
EESPPGLTA	9	Unmodified	_EESPPGLTA_					0	0	0		ENST00000280098.8_1_2:139259536-139307756:+|nuORF	ENST00000280098.8_1_2:139259536-139307756:+|nuORF	ENST00000280098.8_1_2:139259536-139307756:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	900.4325561523438	1	900.430903	899.423627	0.63372	0.00057062	0.25435	0.00022903	0.88807	0.00079965	900.4309147617723	32.458	0.72663	32.079	31.793	32.52	-0.37924					29	13	3	0	0	0	0.035914	1	11778	11778		81.613	26.84	1	13585000			8829	6939	4881	4919	8560	8560					-0.03010790990094847
EESPPGLTA	9	Unmodified	_EESPPGLTA_					0	0	0		ENST00000280098.8_1_2:139259536-139307756:+|nuORF	ENST00000280098.8_1_2:139259536-139307756:+|nuORF	ENST00000280098.8_1_2:139259536-139307756:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	450.7189025878906	2	450.71909	899.423627	0.26056	0.00011744	-0.49033	-0.000221	-0.22977	-0.00010356	450.71900618958216	32.387	0.62284	32.008	31.742	32.364	-0.37923					17	11	2	0	0	0	0.24973	1	11813	11813		36.044	5.8194	1	3907600			8830	6939	4881	4919	8561	8561					-0.03010790990094847
EESPQVVEAPG	11	Unmodified	_EESPQVVEAPG_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MSMS	HCT116MG_D190212_S3	3	571.2736206054688	2	571.272218	1140.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.307	1	22.307	21.807	22.807	0.00074577								0	0	0	0.91433	1	7819	7819		18.146	2.2992	1				8831	1961	4882	4920	8562	8562					-0.034760802154323756
EESQPTHLI	9	Unmodified	_EESQPTHLI_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.7487182617188	2	527.264196	1052.51384	0.66477	0.00035051	0.9716	0.00051229	1.6364	0.0008628	527.2640883894792	34.583	0.2576	34.424	34.296	34.554	-0.15834					10	4	3	0	0	0	0.14956	1	12904	12904		48.346	8.3885	1	43547000			8832	4007	4883	4921	8563	8563					-0.010317416616544506
EESQPTHLI	9	Unmodified	_EESQPTHLI_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-MSMS	HCT116MG_D190212_S3	3	527.2640991210938	2	527.264196	1052.51384	0.19135	0.00010089	-0.119	-6.2745E-05	0.072346	3.8145E-05	527.2640214763776	34.763	0.36434	34.466	34.336	34.7	-0.29707					14	6	3	0	0	0	0.11731	1	12852	12852		54.774	26.287	1	27172000			8833	4007	4883	4921	8564	8564					-0.010317416616544506
EESQPTHLI	9	Unmodified	_EESQPTHLI_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-MSMS	HCT116MG_D190212_S4	4	527.2640991210938	2	527.264196	1052.51384	0.39904	0.0002104	-0.28841	-0.00015207	0.11063	5.8332E-05	527.2639965550384	34.905	0.35876	34.519	34.339	34.698	-0.38606					15	6	3	0	0	0	0.012496	1	12760	12760		107.19	36.053	1	11656000			8834	4007	4883	4921	8565	8565					-0.010317416616544506
EESQPTHLI	9	Unmodified	_EESQPTHLI_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-MATCH	HCT116MG_D190212_S1	1		2	527.264196	1052.51384	0.38882	0.00020501	1.3205	0.00069625	1.7093	0.00090126	527.7669422491075	34.425	0.2084	34.425	34.285	34.493	0	-0.033285	0.0015809	NaN	107.19	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5308700			8835	4007	4883	4921							-0.010317416616544506
EESRDVLVA	9	Unmodified	_EESRDVLVA_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.Q127Hfs*12|1|0.05|ENSG00000081803|chr7:122737026-122737027|CC/-|frameshift_variant;CADPS2|p.Q127Hfs*18|1|0.05|ENSG00000081803|chr7:122737027-122737028|-/AGTTTTATTATTTTTA|frameshift_variant	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2641296386719	2	509.264196	1016.51384	0.25431	0.00012951	-0.30101	-0.00015329	-0.046692	-2.3779E-05	509.26391472221957	32.354	0.62441	32.124	31.787	32.411	-0.23009					19	11	2	0	0	0	0.14362	1	11991	11991		49.554	9.6046	1	25767000			8836	9388	4884	4922	8566	8566					0.006242583383254896
EESRDVLVA	9	Unmodified	_EESRDVLVA_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.Q127Hfs*12|1|0.05|ENSG00000081803|chr7:122737026-122737027|CC/-|frameshift_variant;CADPS2|p.Q127Hfs*18|1|0.05|ENSG00000081803|chr7:122737027-122737028|-/AGTTTTATTATTTTTA|frameshift_variant	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	HCT116MG_D190212_S3	3	509.2640380859375	2	509.264196	1016.51384	0.18347	9.3435E-05	-0.53714	-0.00027355	-0.35367	-0.00018011	509.2638970042663	32.415	0.57275	32.137	31.838	32.41	-0.27841					24	10	3	0	0	0	0.05892	1	11877	11877		70.332	26.56	1	23191000			8837	9388	4884	4922	8567	8567					0.006242583383254896
EESRDVLVA	9	Unmodified	_EESRDVLVA_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.Q127Hfs*12|1|0.05|ENSG00000081803|chr7:122737026-122737027|CC/-|frameshift_variant;CADPS2|p.Q127Hfs*18|1|0.05|ENSG00000081803|chr7:122737027-122737028|-/AGTTTTATTATTTTTA|frameshift_variant	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	HCT116MG_D190212_S4	4	509.2627868652344	2	509.264196	1016.51384	0.17181	8.7496E-05	-0.82678	-0.00042105	-0.65497	-0.00033355	509.26371708627863	32.562	0.57092	32.183	31.845	32.416	-0.37924					18	10	3	0	0	0	0.10244	1	11867	11867		57.722	23.32	1	14278000			8838	9388	4884	4922	8568	8568					0.006242583383254896
EESRDVLVA	9	Unmodified	_EESRDVLVA_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;ENSG00000081803|ENST00000449022|CADPS2;CADPS2|p.Q127Hfs*12|1|0.05|ENSG00000081803|chr7:122737026-122737027|CC/-|frameshift_variant;CADPS2|p.Q127Hfs*18|1|0.05|ENSG00000081803|chr7:122737027-122737028|-/AGTTTTATTATTTTTA|frameshift_variant	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	509.264196	1016.51384	0.25235	0.00012852	-0.35433	-0.00018045	-0.10197	-5.1931E-05	509.2640222787847	32.092	0.31286	32.092	31.857	32.17	0	-0.042093	0.00016423	NaN	70.332	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2705600			8839	9388	4884	4922							0.006242583383254896
EESRGPGHPP	10	Unmodified	_EESRGPGHPP_					0	0	0		nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A;nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A	nc|ENSG00000065989|P27815-6|PDE4A	nc|ENSG00000065989|P27815-6|PDE4A	MULTI-MSMS	HCT116MG_D190212_S1	1	531.271240234375	2	531.751787	1061.48902	0.31856	0.0001694	0.18537	9.8572E-05	0.50393	0.00026797	531.7518635562948	15.822	0.20818	15.822	15.692	15.9	0					6	3	2	0	0	0	0.83158	1	5236	5236		9.3831	2.0939	1	18494000			8840	1165	4885	4923	8569	8569					-0.039263767443799225
EESRMRIAA	9	Unmodified	_EESRMRIAA_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7719116210938	2	531.771665	1061.52878	0.32107	0.00017074	-0.13888	-7.3854E-05	0.18219	9.6884E-05	531.7715281965251	25.634	0.25932	25.265	25.135	25.394	-0.36914					7	4	2	0	0	0	0.018739	1	9245	9245		118.07	36.178	1	57128000			8841	2873	4886	4924	8570	8570					0.0004742693467960635
EESRMRIAA	9	Unmodified	_EESRMRIAA_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	HCT116MG_D190212_S3	3	531.7719116210938	2	531.771665	1061.52878	0.56699	0.00030151	-0.48529	-0.00025806	0.081703	4.3447E-05	531.7715743175057	25.18	0.26084	25.074	24.943	25.204	-0.10618					10	4	3	0	0	0	0.053079	1	9000	9000		89.401	17.478	1	17412000			8842	2873	4886	4924	8571	8571					0.0004742693467960635
EESSKIRAP	9	Unmodified	_EESSKIRAP_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MSMS	HCT116MG_D190212_S1	1	508.77239990234375	2	508.772188	1015.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.061	1	21.061	20.561	21.561	0								0	0	0	0.003143	1	7391	7391		122.18	50.257	1				8843	5693	4887	4925	8572	8572					0.022679645752418764
EESSKIRAP	9	Unmodified	_EESSKIRAP_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7721862792969	2	508.772188	1015.52982	0.2594	0.00013197	-1.2762	-0.0006493	-1.0168	-0.00051732	508.7724199542805	21.665	0.77822	21.28	20.701	21.479	-0.38503					20	14	2	0	0	0	0.01405	1	7621	7621		103.35	32.638	1	83889000			8844	5693	4887	4925	8573	8573					0.022679645752418764
EESSKIRAP	9	Unmodified	_EESSKIRAP_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7725830078125	2	508.772188	1015.52982	0.065615	3.3383E-05	0.67886	0.00034539	0.74448	0.00037877	508.77251605805225	20.84	0.46837	20.875	20.662	21.131	0.034473					20	8	3	0	0	0	0.0050238	1	7200	7200		137.42	65.502	1	37203000			8845	5693	4887	4925	8574	8574					0.022679645752418764
EESSKIRAP	9	Unmodified	_EESSKIRAP_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	HCT116MG_D190212_S4	4	508.77313232421875	2	508.772188	1015.52982	0.2048	0.0001042	0.83082	0.0004227	1.0356	0.00052689	508.7726831455112	21.203	0.46743	20.993	20.76	21.227	-0.20959					18	8	3	0	0	0	0.0063854	1	7272	7272		125.53	62.956	1	16051000			8846	5693	4887	4925	8575	8575					0.022679645752418764
EESVFAVTA	9	Unmodified	_EESVFAVTA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S2	2	952.4629516601562	1	952.462204	951.454927	1.1068	0.0010542	-0.34863	-0.00033206	0.75821	0.00072217	952.4617142328786	46.716	0.36017	46.605	46.42	46.78	-0.11122					14	6	3	0	0	0	0.013464	1	17809	17809		104.8	51.224	1	38347000			8847	2297	4888	4926	8576	8576					-0.022742179559941178
EESVFAVTA	9	Unmodified	_EESVFAVTA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S3	3	952.4627075195312	1	952.462204	951.454927	0.84772	0.00080742	0.23524	0.00022406	1.083	0.0010315	952.462378076718	46.934	0.36499	46.62	46.437	46.802	-0.31405					15	6	3	0	0	0	0.023611	1	17614	17614		92.822	39.247	1	11297000			8848	2297	4888	4926	8577	8577					-0.022742179559941178
EESVFAVTA	9	Unmodified	_EESVFAVTA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S4	4	952.4630737304688	1	952.462204	951.454927	0.69765	0.00066448	-0.31265	-0.00029779	0.385	0.0003667	952.4617348114402	46.999	0.3115	46.628	46.485	46.796	-0.37038					7	5	2	0	0	0	0.050578	1	17391	17391		74.423	34.465	1	5148700			8849	2297	4888	4926	8578	8578					-0.022742179559941178
EETAAEESWDY	11	Unmodified	_EETAAEESWDY_					0	0	0		ENST00000596426.5_1_19:49838791-49841436:+|nuORF;ENST00000391859.6_1_19:49841166-49843582:+|nuORF;nc|ENSG00000104894|P11049-3|CD37;nc|ENSG00000104894|P11049-2|CD37;ENSG00000104894|ENST00000323906|CD37	ENST00000596426.5_1_19:49838791-49841436:+|nuORF	ENST00000596426.5_1_19:49838791-49841436:+|nuORF	MSMS	HCT116MG_D190212_S1	1	665.2594604492188	2	665.259504	1328.50446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.504	1	33.504	33.004	34.004	0								0	0	0	0.8787	1	12401	12401		22.736	13.353	1				8850	1965	4889	4927	8579	8579					-0.146655995285073
EETATTVVA	9	Unmodified	_EETATTVVA_					0	0	0		ENST00000449943.5_1_11:64895819-64896227:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64895819-64896227:-|nuORF	ENST00000449943.5_1_11:64895819-64896227:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	920.4581909179688	1	920.457118	919.449842	0.71853	0.00066137	-0.043659	-4.0187E-05	0.67487	0.00062119	920.4569131702644	28.043	0.31274	27.855	27.725	28.038	-0.18847					10	5	2	0	0	0	0.043314	1	10137	10137		77.984	33.577	1	7583000			8851	4511	4890	4928	8580	8580					-0.013105218186069578
EETATTVVA	9	Unmodified	_EETATTVVA_					0	0	0		ENST00000449943.5_1_11:64895819-64896227:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64895819-64896227:-|nuORF	ENST00000449943.5_1_11:64895819-64896227:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	920.45751953125	1	920.457118	919.449842	0.72426	0.00066665	-0.31354	-0.0002886	0.41073	0.00037806	920.4568986305293	28.168	0.31223	27.836	27.7	28.012	-0.33138					8	5	2	0	0	0	0.24973	1	10165	10165		36.044	12.896	1	3481200			8852	4511	4890	4928	8581	8581					-0.013105218186069578
EETATTVVA	9	Unmodified	_EETATTVVA_					0	0	0		ENST00000449943.5_1_11:64895819-64896227:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64895819-64896227:-|nuORF	ENST00000449943.5_1_11:64895819-64896227:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	920.457118	919.449842	0.80605	0.00074193	0.24814	0.0002284	1.0542	0.00097033	920.4573285755637	28.074	0.20717	27.744	27.615	27.822	-0.32987	-0.067336	0.00010415	NaN	77.984	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8382900			8853	4511	4890	4928							-0.013105218186069578
EETDKIINY	9	Unmodified	_EETDKIINY_					0	0	0		NCOA5|p.T426Pfs*19|2|0.24|ENSG00000124160|chr20:46062765-46062765|G/-|frameshift_variant;ENSG00000124160|ENST00000290231|NCOA5	NCOA5|p.T426Pfs*19|2|0.24|ENSG00000124160|chr20:46062765-46062765|G/-|frameshift_variant	NCOA5|p.T426Pfs*19|2|0.24|ENSG00000124160|chr20:46062765-46062765|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	562.8458251953125	2	562.777136	1123.53972	0.22667	0.00012756	-0.52105	-0.00029323	-0.29438	-0.00016567	562.7772271878825	36.004	0.25479	35.704	35.527	35.781	-0.30042					6	4	2	0	0	0	0.0080847	2	13282	13282;13315		118.07	68.135	1	5980900			8854	2829	4891	4929	8582;8583	8582					-0.017108922100533164
EETKLKGSA	9	Unmodified	_EETKLKGSA_					0	0	0			REV__ENST00000287169.7_1_11:57439511-57439550:+|nuORF	REV__ENST00000287169.7_1_11:57439511-57439550:+|nuORF	MSMS	HCT116MG_D190212_S2	2	481.7610168457031	2	481.761289	961.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.706	1	11.424	10.924	11.924	-0.28186								0	0	0	0.76902	1	3788	3788		4.3292	0	1		+		8855	14734	4892	4930	8584	8584					0.02573159826670235
EETLLDQSF	9	Unmodified	_EETLLDQSF_					0	0	0		ENSG00000075131|ENST00000261881|TIPIN	ENSG00000075131|ENST00000261881|TIPIN	ENSG00000075131|ENST00000261881|TIPIN	MSMS	HCT116MG_D190212_S2	2	541.2557983398438	2	541.256037	1080.49752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.535	1	52.347	51.847	52.847	-0.18725								0	0	0	0.56943	1	20183	20183		25.399	4.9457	1				8856	1307	4893	4931	8585	8585					-0.039508676184368596
EETLLDQSF	9	Unmodified	_EETLLDQSF_					0	0	0		ENSG00000075131|ENST00000261881|TIPIN	ENSG00000075131|ENST00000261881|TIPIN	ENSG00000075131|ENST00000261881|TIPIN	MULTI-MSMS	HCT116MG_D190212_S3	3	541.2565307617188	2	541.256037	1080.49752	0.55592	0.00030089	0.033058	1.7893E-05	0.58898	0.00031879	541.2559526679593	52.672	0.2616	52.365	52.195	52.457	-0.30639					8	4	2	0	0	0	0.049545	1	19936	19936		74.929	40.827	1	4508700			8857	1307	4893	4931	8586	8586					-0.039508676184368596
EETLRQYQA	9	Unmodified	_EETLRQYQA_					0	0	0		ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant;ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	569.2802124023438	2	569.280377	1136.5462	0.54725	0.00031154	-0.37549	-0.00021376	0.17176	9.7777E-05	569.2803856255346	25.381	0.41596	25.275	25.1	25.516	-0.10618					12	7	3	0	0	0	0.47809	1	9070	9070		18.146	0.7037	1	8752500			8858	97	4894	4932	8587	8587					-0.01660954258682068
EETNRLYAA	9	Unmodified	_EETNRLYAA_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	HCT116MG_D190212_S3	3	533.7619018554688	2	533.76182	1065.50909	0.55487	0.00029617	0.33505	0.00017884	0.88992	0.00047501	533.7617051713307	27.835	0.31182	27.647	27.465	27.777	-0.18847					7	5	2	0	0	0	0.040027	1	10073	10073		79.596	47.559	1	7042500			8859	4365	4895	4933	8588	8588					-0.021046258044407296
EETNRLYAA	9	Unmodified	_EETNRLYAA_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	HCT116MG_D190212_S4	4	533.7623291015625	2	533.76182	1065.50909	0.43783	0.0002337	0.3789	0.00020224	0.81672	0.00043594	533.7620205074659	28.057	0.20781	27.726	27.596	27.804	-0.33138					6	3	2	0	0	0	0.21258	1	10095	10095		39.95	20.588	1	4600500			8860	4365	4895	4933	8589	8589					-0.021046258044407296
EETQQLEEEL	10	Unmodified	_EETQQLEEEL_					0	0	0		nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-MSMS	HCT116MG_D190212_S3	3	624.288818359375	2	624.285522	1246.55649	0.4939	0.00030834	2.2671	0.0014153	2.761	0.0017237	624.2874402562105	42.317	0.4693	42.013	41.832	42.301	-0.30352					11	8	2	0	0	0	0.75427	1	15749	15749		15.847	1.0089	1	14523000			8861	797	4896	4934	8590	8590					-0.05692436114736665
EETQQLEEEL	10	Unmodified	_EETQQLEEEL_					0	0	0		nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-MATCH	HCT116MG_D190212_S4	4		2	624.285522	1246.55649	0.33007	0.00020606	-0.80532	-0.00050275	-0.47525	-0.00029669	624.2868366680473	42.374	0.25948	41.998	41.891	42.15	-0.37565	-0.0077809	-0.0033473	NaN	15.847	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1637600			8862	797	4896	4934							-0.05692436114736665
EETQSTLQA	9	Unmodified	_EETQSTLQA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	503.73828125	2	503.738011	1005.46147	0.55621	0.00028018	-0.07353	-3.704E-05	0.48268	0.00024314	503.73794325612215	25.217	0.41675	24.842	24.66	25.076	-0.37521					13	7	3	0	0	0	0.077982	1	9056	9056		62.573	34.944	1	34202000			8863	2909	4897	4935	8591	8591					-0.041043247952757156
EETQSTLQA	9	Unmodified	_EETQSTLQA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1006.46826171875	1	1006.46875	1005.46147	0.68385	0.00068827	-0.068944	-6.939E-05	0.6149	0.00061888	1006.4684650124025	25.18	0.2602	24.805	24.66	24.92	-0.37521					7	4	2	0	0	0	0.030723	1	9063	9063		85.642	35.709	1	22852000			8864	2909	4897	4935	8592	8592					-0.041043247952757156
EETQSTLQA	9	Unmodified	_EETQSTLQA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	1006.4688110351562	1	1006.46875	1005.46147	0.68499	0.00068942	0.22371	0.00022515	0.9087	0.00091458	1006.4687550261344	24.994	0.41708	24.888	24.735	25.152	-0.10618					17	7	3	0	0	0	0.020353	1	8899	8899		96.111	37.432	1	15024000			8865	2909	4897	4935	8593	8593					-0.041043247952757156
EETQSTLQA	9	Unmodified	_EETQSTLQA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S4	4	503.7381591796875	2	503.738011	1005.46147	0.45264	0.00022801	0.0032747	1.6496E-06	0.45592	0.00022966	503.7379051694008	25.136	0.36404	24.857	24.694	25.058	-0.27958					14	6	3	0	0	0	0.055677	1	8904	8904		71.922	42.082	1	8071700			8866	2909	4897	4935	8594	8594					-0.041043247952757156
EETQSTLQA	9	Unmodified	_EETQSTLQA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S4	4	1006.4697265625	1	1006.46875	1005.46147	0.77241	0.00077741	0.098872	9.9512E-05	0.87128	0.00087692	1006.4686934081703	25.156	0.31202	24.876	24.694	25.006	-0.27958					12	5	3	0	0	0	0.035349	1	8907	8907		81.89	35.869	1	5757500			8867	2909	4897	4935	8595	8595					-0.041043247952757156
EETQSTLQA	9	Unmodified	_EETQSTLQA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	503.738011	1005.46147	0.45891	0.00023117	-0.090668	-4.5673E-05	0.36824	0.0001855	503.7379120431527	24.971	0.52111	24.865	24.683	25.204	-0.10618	0.010302	-1.6818E-05	NaN	71.922	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20193000			8868	2909	4897	4935							-0.041043247952757156
EETRIHEA	8	Unmodified	_EETRIHEA_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MSMS	HCT116MG_D190212_S2	2	492.7044982910156	2	492.740888	983.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.442	1	17.092	16.592	17.592	-0.34933								0	0	0	0.5886	1	5936	5936		38.176	12.776	1				8869	2004	4898	4936	8596	8596					-0.025171814929535685
EETRRNFEA	9	Unmodified	_EETRRNFEA_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	576.2755737304688	2	576.275626	1150.5367	0.579	0.00033366	-0.1983	-0.00011428	0.3807	0.00021939	576.27532203832	20.586	0.2602	20.586	20.435	20.696	0					7	4	2	0	0	0	0.39716	1	7220	7220		29.841	15.002	1	6550300			8870	3249	4899	4937	8597	8597					-0.032547225441931005
EETRRNFEA	9	Unmodified	_EETRRNFEA_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	576.2757568359375	2	576.275626	1150.5367	0.33395	0.00019245	0.4226	0.00024353	0.75655	0.00043598	576.2756976615616	21.241	0.36259	20.858	20.703	21.065	-0.38288					16	6	4	0	0	0	0.010528	1	7477	7477		132.38	67.145	1	60265000			8871	3249	4899	4937	8598	8598					-0.032547225441931005
EETRRNFEA	9	Unmodified	_EETRRNFEA_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	576.2763061523438	2	576.275626	1150.5367	0.35155	0.00020259	0.47153	0.00027173	0.82308	0.00047432	576.2757316126416	20.29	0.46858	20.338	20.207	20.676	0.048107					17	8	4	0	0	0	0.01206	1	7010	7010		117.76	52.526	1	25909000			8872	3249	4899	4937	8599	8599					-0.032547225441931005
EETRRNFEA	9	Unmodified	_EETRRNFEA_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	384.5195007324219	3	384.51951	1150.5367	-0.17091	-6.5717E-05	0.0092294	3.5489E-06	-0.16168	-6.2168E-05	384.5194889260995	20.289	0.36443	20.337	20.207	20.572	0.048107					13	6	3	0	0	0	0.43552	1	7033	7033		20.581	6.1756	1	9718900			8873	3249	4899	4937	8600	8600					-0.032547225441931005
EETRRNFEA	9	Unmodified	_EETRRNFEA_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S4	4	576.27587890625	2	576.275626	1150.5367	0.42414	0.00024442	-0.29036	-0.00016733	0.13377	7.7091E-05	576.2754718141359	20.754	0.3634	20.544	20.396	20.76	-0.20959					12	6	3	0	0	0	0.17033	1	7139	7139		47.594	7.6447	1	7954400			8874	3249	4899	4937	8601	8601					-0.032547225441931005
EETRRNFEA	9	Unmodified	_EETRRNFEA_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	384.51951	1150.5367	0.073368	2.8211E-05	-0.22119	-8.505E-05	-0.14782	-5.6839E-05	384.51939000103624	20.788	0.25978	20.578	20.396	20.656	-0.20959	0.12022	-9.1912E-05	NaN	20.581	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3262100			8875	3249	4899	4937							-0.032547225441931005
EETSRALSA	9	Unmodified	_EETSRALSA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	482.2407531738281	2	482.240721	962.466889	0.27397	0.00013212	-0.016108	-7.768E-06	0.25786	0.00012435	482.24069030071286	22.203	0.26006	21.818	21.687	21.947	-0.3852					9	4	3	0	0	0	0.011132	1	7862	7862		110.55	54.376	1	31818000			8876	5492	4900	4938	8602	8602					-0.015846012128235998
EETSRALSA	9	Unmodified	_EETSRALSA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	482.24102783203125	2	482.240721	962.466889	0.17596	8.4857E-05	0.08939	4.3107E-05	0.26535	0.00012796	482.2408298679494	21.596	0.31665	21.615	21.483	21.799	0.018446					8	5	2	0	0	0	0.016412	1	7538	7538		100.09	43.914	1	14314000			8877	5492	4900	4938	8603	8603					-0.015846012128235998
EETSRALSA	9	Unmodified	_EETSRALSA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S4	4	482.2413024902344	2	482.240721	962.466889	0.21748	0.00010488	0.043953	2.1196E-05	0.26143	0.00012607	482.2406325571952	21.93	0.36365	21.711	21.529	21.893	-0.21832					9	6	2	0	0	0	0.064006	2	7602	7593;7602		67.838	29.663	1	2602400			8878	5492	4900	4938	8604;8605	8605					-0.015846012128235998
EETTEMVSA	9	Unmodified	_EETTEMVSA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	996.4212646484375	1	996.419018	995.411742	0.92999	0.00092666	1.027	0.0010233	1.957	0.00195	996.4201644015376	29.603	0.20689	29.303	29.185	29.392	-0.30095					6	3	2	0	0	0	0.050578	1	10870	10870		74.423	23.568	1	17022000			8879	3119	4901	4939	8606	8606					-0.08614775795581409
EETTEMVSA	9	Unmodified	_EETTEMVSA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	996.4190063476562	1	996.419018	995.411742	0.68654	0.00068408	-0.24338	-0.0002425	0.44316	0.00044157	996.4187787761249	29.691	0.37078	29.454	29.292	29.662	-0.23655					14	6	3	0	0	0	0.031005	1	10793	10793		85.357	34.502	1	12588000			8880	3119	4901	4939	8607	8607					-0.08614775795581409
EETTEMVSA	9	Unmodified	_EETTEMVSA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	498.7138671875	2	498.713147	995.411742	0.5493	0.00027394	0.093901	4.683E-05	0.6432	0.00032077	498.7131979882263	29.694	0.31837	29.458	29.292	29.61	-0.23655					8	5	2	0	0	0	0.41514	1	10821	10821		21.747	0	1	4848400			8881	3119	4901	4939	8608	8608					-0.08614775795581409
EETTEMVSA	9	Unmodified	_EETTEMVSA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	996.419189453125	1	996.419018	995.411742	0.57539	0.00057333	-0.28112	-0.00028012	0.29426	0.00029321	996.418773606803	29.772	0.25995	29.423	29.293	29.553	-0.34921					8	4	2	0	0	0	0.031005	1	10793	10793		85.357	34.502	1	3815400			8882	3119	4901	4939	8609	8609					-0.08614775795581409
EETVAVVAENI	11	Unmodified	_EETVAVVAENI_					0	0	0			REV__CNDP2|p.A267V|1|0.46|ENSG00000133313|chr18:74513616-74513616|C/T|missense_variant	REV__CNDP2|p.A267V|1|0.46|ENSG00000133313|chr18:74513616-74513616|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	587.3038940429688	2	587.303518	1172.59248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.072	1	16.722	16.222	17.222	-0.34933								0	0	0	0.94416	1	5787	5787		9.3831	0.63772	1		+		8883	10211	4902	4940	8610	8610					0.013090658527517007
EETVFYGL	8	Unmodified	_EETVFYGL_					0	0	0		ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	957.456298828125	1	957.45639	956.449113	0.68543	0.00065627	0.11492	0.00011003	0.80035	0.0007663	957.4564573010945	55.799	0.20799	55.613	55.483	55.691	-0.18565					5	3	2	0	0	0	0.1757	1	21542	21542		78.445	18.65	1	27567000			8884	2039	4903	4941	8611	8611					-0.03085316467672783
EETVFYGL	8	Unmodified	_EETVFYGL_					0	0	0		ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	ENST00000489732.1_1_7:105917445-105925330:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	957.4562377929688	1	957.45639	956.449113	0.80523	0.00077097	0.13416	0.00012845	0.93938	0.00089942	957.4558331093383	55.937	0.20906	55.649	55.518	55.727	-0.28773					5	3	2	0	0	0	0.37136	1	21249	21249		52.693	16.227	1	4035300			8885	2039	4903	4941	8612	8612					-0.03085316467672783
EEVAPPKPP	9	Unmodified	_EEVAPPKPP_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MSMS	HCT116MG_D190212_S4	4	482.2589416503906	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.934	1	30.57	30.07	31.07	-0.36416								0	0	0	0.74436	1	11206	11206		16.942	2.104	1				8886	2109	4904	4942	8613	8613					0.02454365177618456
EEVAPPLP	8	Unmodified	_EEVAPPLP_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENST00000522774.1_1_8:37728794-37730726:-|nuORF;ENST00000523182.5_1_8:37720415-37730726:-|nuORF	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	426.7502136230469	2	426.229094	850.443634	0.056315	2.4003E-05	0.22688	9.6703E-05	0.2832	0.00012071	426.229197325357	39.529	0.30249	39.451	39.328	39.631	-0.077835					9	5	2	0	0	0	0.25037	1	14879	14879		28.173	0	1	70114000			8887	4295	4905	4943	8614	8614					0.012430047405132427
EEVASHHEA	9	Unmodified	_EEVASHHEA_					0	0	0		ENSG00000119392|ENST00000309971|GLE1;nc|ENSG00000119392|Q53GS7-2|GLE1;GLE1|p.G488C|1|0.38|ENSG00000119392|chr9:128533767-128533767|G/T|missense_variant	ENSG00000119392|ENST00000309971|GLE1	ENSG00000119392|ENST00000309971|GLE1	MULTI-MSMS	HCT116MG_D190212_S1	1	504.7228088378906	2	504.722695	1007.43084	0.46024	0.00023229	-0.35724	-0.00018031	0.103	5.1984E-05	504.72254081760207	14.624	0.156	14.624	14.494	14.65	0					4	2	2	0	0	0	0.071351	1	4809	4809		64.236	23.788	1	5385400			8888	2637	4906	4944	8615	8615					-0.07258058389663802
EEVASHHEA	9	Unmodified	_EEVASHHEA_					0	0	0		ENSG00000119392|ENST00000309971|GLE1;nc|ENSG00000119392|Q53GS7-2|GLE1;GLE1|p.G488C|1|0.38|ENSG00000119392|chr9:128533767-128533767|G/T|missense_variant	ENSG00000119392|ENST00000309971|GLE1	ENSG00000119392|ENST00000309971|GLE1	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7231140136719	2	504.722695	1007.43084	0.33331	0.00016823	0.015541	7.8437E-06	0.34885	0.00017607	504.72265992517276	11.071	0.49954	10.793	10.54	11.04	-0.27854					34	19	2	0	0	0	0.21251	1	3503	3503		39.957	39.957	1	1190100			8889	2637	4906	4944	8616	8616					-0.07258058389663802
EEVDYMTEF	9	Unmodified	_EEVDYMTEF_					0	0	0		ENST00000560833.1_1_15:77236155-77240950:+|nuORF;RCN2|p.N201Mfs*36|1|0.51|ENSG00000117906|chr15:76947457-76947457|A/-|frameshift_variant;ENSG00000117906|ENST00000394885|RCN2;nc|ENSG00000117906|Q14257-2|RCN2	ENST00000560833.1_1_15:77236155-77240950:+|nuORF	ENST00000560833.1_1_15:77236155-77240950:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	582.2684936523438	2	581.73408	1161.45361	0.34153	0.00019868	1.0332	0.00060107	1.3748	0.00079975	581.7350251159193	16.466	0.25999	16.551	16.341	16.601	0.085424					5	4	2	0	0	0	0.65706	1	5445	5445		7.9102	0	1	1203100			8890	2593	4907	4945	8617	8617					-0.12066220107067238
EEVEAAKAA	9	Unmodified	_EEVEAAKAA_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2322998046875	2	459.232364	916.450176	-0.21829	-0.00010025	0.66274	0.00030435	0.44445	0.0002041	459.2325387698069	18.746	0.31215	18.383	18.269	18.581	-0.36325					7	5	2	0	0	0	0.24895	1	6476	6476		36.127	10.728	1	7843000			8891	3854	4908	4946	8618	8618					-0.011391020987730371
EEVEAAKAA	9	Unmodified	_EEVEAAKAA_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	HCT116MG_D190212_S4	4	459.7481994628906	2	459.232364	916.450176	0.013829	6.3509E-06	0.073573	3.3787E-05	0.087402	4.0138E-05	459.23254987261004	18.201	0.20658	18.026	17.896	18.102	-0.17501					5	3	2	0	0	0	0.31596	1	6091	6091		29.082	2.1979	1	1513000			8892	3854	4908	4946	8619	8619					-0.011391020987730371
EEVEAAKAAA	10	Unmodified	_EEVEAAKAAA_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7507019042969	2	494.750921	987.48729	0.28917	0.00014307	-0.31408	-0.00015539	-0.024906	-1.2322E-05	494.7507210148944	19.867	0.20705	19.492	19.403	19.61	-0.37503					6	3	2	0	0	0	0.21913	1	6942	6942		57.722	13.864	1	3800400			8893	3854	4909	4947	8620	8620					-0.006954305530143756
EEVEGHVA	8	Unmodified	_EEVEGHVA_					0	0	0		ENST00000477409.1_1_2:97001567-97024936:+|nuORF;NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant;ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MSMS	HCT116MG_D190212_S1	1	435.20318603515625	2	435.203607	868.392661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.078	1	20.078	19.578	20.578	0								0	0	0	0.75335	1	6998	6998		26.341	6.9023	1				8894	2726	4910	4948	8621	8621					-0.04679944304325545
EEVEGHVA	8	Unmodified	_EEVEGHVA_					0	0	0		ENST00000477409.1_1_2:97001567-97024936:+|nuORF;NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant;ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	435.20361328125	2	435.203607	868.392661	-0.00036685	-1.5965E-07	0.29393	0.00012792	0.29357	0.00012776	435.2035368705508	20.49	0.31866	20.111	19.917	20.236	-0.37949					11	5	3	0	0	0	0.29313	1	7189	7189		59.795	10.126	1	13686000			8895	2726	4910	4948	8622	8622					-0.04679944304325545
EEVEGHVA	8	Unmodified	_EEVEGHVA_					0	0	0		ENST00000477409.1_1_2:97001567-97024936:+|nuORF;NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant;ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	435.2034606933594	2	435.203607	868.392661	0.13692	5.9589E-05	-0.12634	-5.4984E-05	0.01058	4.6045E-06	435.2035191502235	19.808	0.26044	19.868	19.698	19.959	0.059828					9	4	3	0	0	0	0.083541	1	6821	6821		98.807	31.772	1	9741700			8896	2726	4910	4948	8623	8623					-0.04679944304325545
EEVEGHVA	8	Unmodified	_EEVEGHVA_					0	0	0		ENST00000477409.1_1_2:97001567-97024936:+|nuORF;NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant;ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	435.20391845703125	2	435.203607	868.392661	0.23782	0.0001035	0.21898	9.5299E-05	0.4568	0.0001988	435.2035423275114	20.112	0.2598	19.918	19.788	20.048	-0.19367					7	4	2	0	0	0	0.5791	1	6877	6877		34.187	7.8461	1	2162500			8897	2726	4910	4948	8624	8624					-0.04679944304325545
EEVEMTRM	8	Unmodified	_EEVEMTRM_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;nc|ENSG00000165688|Q10713-2|PMPCA;PMPCA|p.V188L|1|0.13|ENSG00000165688|chr9:136416320-136416320|G/C|missense_variant;ENST00000462616.1_1_9:139310627-139310981:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7252807617188	2	512.725535	1023.43652	0.18485	9.4776E-05	0.26414	0.00013543	0.44899	0.00023021	512.725471411923	32.615	0.26063	32.404	32.221	32.482	-0.21135					6	4	2	0	0	0	0.045718	1	12059	12059		128.37	76.097	1	38381000			8898	4791	4911	4949	8625	8625					-0.07426419193859601
EEVEMTRM	8	Unmodified	_EEVEMTRM_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;nc|ENSG00000165688|Q10713-2|PMPCA;PMPCA|p.V188L|1|0.13|ENSG00000165688|chr9:136416320-136416320|G/C|missense_variant;ENST00000462616.1_1_9:139310627-139310981:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7257690429688	2	512.725535	1023.43652	0.38212	0.00019592	-0.24117	-0.00012366	0.14095	7.2266E-05	512.7254018482708	32.715	0.26042	32.43	32.3	32.56	-0.28511					9	4	3	0	0	0	0.33298	1	12007	12007		56.177	20.133	1	7000800			8899	4791	4911	4949	8626	8626					-0.07426419193859601
EEVEMTRM	8	Unmodified	_EEVEMTRM_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;nc|ENSG00000165688|Q10713-2|PMPCA;PMPCA|p.V188L|1|0.13|ENSG00000165688|chr9:136416320-136416320|G/C|missense_variant;ENST00000462616.1_1_9:139310627-139310981:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MATCH	HCT116MG_D190212_S4	4		2	512.725535	1023.43652	0.288	0.00014766	-0.81449	-0.00041761	-0.52649	-0.00026995	512.7253064456603	32.821	0.20763	32.442	32.312	32.52	-0.37924	0.017032	-0.00063261	NaN	128.37	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1245400			8900	4791	4911	4949							-0.07426419193859601
EEVETFAF	8	Unmodified	_EEVETFAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000224411|Q14568|HSP90AA2P;HSP90AA1|p.A24T|1|0.11|ENSG00000080824|chr14:102086309-102086309|C/T|missense_variant;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S2	2	971.4365234375	1	971.435654	970.428378	0.64316	0.00062479	-0.16859	-0.00016378	0.47457	0.00046101	971.4352961755465	54.722	0.35889	54.533	54.405	54.764	-0.1894					16	6	4	0	0	0	0.083541	1	21080	21080		98.807	42.266	1	313240000			8901	1617;1401	4912	4950	8627	8627					-0.05801906847318605
EEVETFAF	8	Unmodified	_EEVETFAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000224411|Q14568|HSP90AA2P;HSP90AA1|p.A24T|1|0.11|ENSG00000080824|chr14:102086309-102086309|C/T|missense_variant;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	971.4361572265625	1	971.435654	970.428378	0.52425	0.00050927	0.22604	0.00021958	0.75029	0.00072885	971.435675527696	54.832	0.47061	54.536	54.4	54.87	-0.29587					21	8	4	0	0	0	0.083541	1	20785	20785		98.807	42.266	1	82276000			8902	1617;1401	4912	4950	8628	8628					-0.05801906847318605
EEVETFAF	8	Unmodified	_EEVETFAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000224411|Q14568|HSP90AA2P;HSP90AA1|p.A24T|1|0.11|ENSG00000080824|chr14:102086309-102086309|C/T|missense_variant;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	486.2215576171875	2	486.221465	970.428378	0.14956	7.2722E-05	0.15187	7.3842E-05	0.30143	0.00014656	486.2213547691914	54.878	0.2612	54.582	54.452	54.713	-0.29587					9	4	3	0	0	0	0.23352	1	20808	20808		67.035	26.587	1	9275100			8903	1617;1401	4912	4950	8629	8629					-0.05801906847318605
EEVETFAF	8	Unmodified	_EEVETFAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000224411|Q14568|HSP90AA2P;HSP90AA1|p.A24T|1|0.11|ENSG00000080824|chr14:102086309-102086309|C/T|missense_variant;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S4	4	971.4346313476562	1	971.435654	970.428378	0.67729	0.00065794	0.0062037	6.0265E-06	0.68349	0.00066397	971.4355371329253	54.854	0.31284	54.537	54.406	54.719	-0.31774					13	5	4	0	0	0	0.083541	1	20540	20540		98.807	31.772	1	25646000			8904	1617;1401	4912	4950	8630	8630					-0.05801906847318605
EEVETFAF	8	Unmodified	_EEVETFAF_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000224411|Q14568|HSP90AA2P;HSP90AA1|p.A24T|1|0.11|ENSG00000080824|chr14:102086309-102086309|C/T|missense_variant;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.Q85Kfs*14|1|0.05|ENSG00000080824|chr14:102086034-102086034|G/-|frameshift_variant;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AA1|p.S330Qfs*48|1|0.21|ENSG00000080824|chr14:102084558-102084558|A/-|frameshift_variant;HSP90AA1|p.K419Nfs*3|1|0.25|ENSG00000080824|chr14:102083874-102083874|T/-|frameshift_variant	ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	486.221465	970.428378	0.057818	2.8113E-05	0.21427	0.00010418	0.27209	0.00013229	486.2214756485106	54.906	0.20851	54.589	54.458	54.667	-0.31774	0.0030598	2.0898E-05	NaN	67.035	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3197200			8905	1617;1401	4912	4950							-0.05801906847318605
EEVEVYRH	8	Unmodified	_EEVEVYRH_					0	0	0		nc|ENSG00000188807|Q5SNT2-2|TMEM201;TMEM201|p.P547Lfs*38|1|0.31|ENSG00000188807|chr1:9610676-9610676|C/-|frameshift_variant;ENSG00000188807|ENST00000340381|TMEM201	nc|ENSG00000188807|Q5SNT2-2|TMEM201	nc|ENSG00000188807|Q5SNT2-2|TMEM201	MSMS	HCT116MG_D190212_S1	1	530.7567749023438	2	530.756538	1059.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.146	1	22.146	21.646	22.646	0								0	0	0	1.9987999999999997E-21	1	7826	7826		205.38	108.31	1				8906	6002	4913	4951	8631	8631					-0.028846084588622034
EEVEVYRH	8	Unmodified	_EEVEVYRH_					0	0	0		nc|ENSG00000188807|Q5SNT2-2|TMEM201;TMEM201|p.P547Lfs*38|1|0.31|ENSG00000188807|chr1:9610676-9610676|C/-|frameshift_variant;ENSG00000188807|ENST00000340381|TMEM201	nc|ENSG00000188807|Q5SNT2-2|TMEM201	nc|ENSG00000188807|Q5SNT2-2|TMEM201	MULTI-MSMS	HCT116MG_D190212_S2	2	530.7565307617188	2	530.756538	1059.49852	0.5234	0.0002778	-0.13089	-6.9473E-05	0.39251	0.00020833	530.7564455792563	22.587	0.31136	22.201	22.051	22.362	-0.3852					11	5	3	0	0	0	0.004099	2	8025	8020;8025		172.91	94.922	1	37251000			8907	6002	4913	4951	8632;8633	8633					-0.028846084588622034
EEVGGIPVP	9	Unmodified	_EEVGGIPVP_					0	0	0		ENSG00000003249|ENST00000002501|DBNDD1;nc|ENSG00000003249|Q9H9R9-2|DBNDD1;nc|ENSG00000003249|Q9H9R9-3|DBNDD1	ENSG00000003249|ENST00000002501|DBNDD1	ENSG00000003249|ENST00000002501|DBNDD1	MULTI-MSMS	HCT116MG_D190212_S2	2	896.47265625	1	896.472374	895.465098	1.0668	0.00095631	-0.4808	-0.00043102	0.58596	0.00052529	896.4720288751631	51.241	0.723	51.063	50.706	51.429	-0.17868					23	13	2	0	0	0	0.014796	1	19656	19656		101.72	33.641	1	23708000			8908	794	4914	4952	8634	8634					0.013183897692329083
EEVGGIPVP	9	Unmodified	_EEVGGIPVP_					0	0	0		ENSG00000003249|ENST00000002501|DBNDD1;nc|ENSG00000003249|Q9H9R9-2|DBNDD1;nc|ENSG00000003249|Q9H9R9-3|DBNDD1	ENSG00000003249|ENST00000002501|DBNDD1	ENSG00000003249|ENST00000002501|DBNDD1	MULTI-MSMS	HCT116MG_D190212_S3	3	897.477294921875	1	896.472374	895.465098	0.98409	0.00088221	-0.46255	-0.00041466	0.52154	0.00046754	896.4717835910054	51.478	0.6816	51.166	50.857	51.539	-0.31166					21	12	2	0	0	0	0.072989	1	19427	19427		63.563	15.217	1	5178700			8909	794	4914	4952	8635	8635					0.013183897692329083
EEVIATIF	8	Unmodified	_EEVIATIF_					0	0	0		nc|ENSG00000186480|O15503-2|INSIG1;ENSG00000186480|ENST00000340368|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	MULTI-MSMS	HCT116MG_D190212_S3	3	921.49365234375	1	921.492775	920.485499	1.0046	0.00092575	-0.015182	-1.399E-05	0.98944	0.00091176	921.4928814424718	57.19	0.15659	56.911	56.833	56.99	-0.27913					4	2	2	0	0	0	0.50777	1	21752	21752		40.449	8.3316	1	1975400			8910	5889	4915	4953	8636	8636					0.022075604290648698
EEVIVTEV	8	Unmodified	_EEVIVTEV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	917.4829711914062	1	917.482605	916.475328	0.84466	0.00077496	-0.045966	-4.2173E-05	0.79869	0.00073279	917.4824204058085	43.238	0.1569	43.238	43.108	43.264	0					4	2	2	0	0	0	0.050259	1	16336	16336		123.1	29.213	1	11967000			8911	3119	4916	4954	8637	8637					0.013749527038044107
EEVIVTEV	8	Unmodified	_EEVIVTEV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	917.4828491210938	1	917.482605	916.475328	0.19468	0.00017862	0.027772	2.548E-05	0.22245	0.0002041	917.4826337618084	43.232	0.41301	43.158	42.994	43.407	-0.073376					11	7	2	0	0	0	0.057785	1	16400	16400		114.94	21.06	1	24336000			8912	3119	4916	4954	8638	8638					0.013749527038044107
EEVIVTEV	8	Unmodified	_EEVIVTEV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	917.4828491210938	1	917.482605	916.475328	0.80924	0.00074246	-0.55177	-0.00050624	0.25747	0.00023622	917.4820994204366	43.468	0.26002	43.161	43.032	43.292	-0.30616					7	4	2	0	0	0	0.15838	1	16247	16247		81.864	7.4677	1	10283000			8913	3119	4916	4954	8639	8639					0.013749527038044107
EEVIVTEV	8	Unmodified	_EEVIVTEV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH	HCT116MG_D190212_S4	4		1	917.482605	916.475328	0.71463	0.00065566	0.0089179	8.182E-06	0.72355	0.00066384	917.4823793508544	43.601	0.20131	43.227	43.114	43.315	-0.37433	0.030639	0.00023463	NaN	123.1	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2496900			8914	3119	4916	4954							0.013749527038044107
EEVKKSDPKEE	11	Unmodified	_EEVKKSDPKEE_					0	0	0			REV__ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant	REV__ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	659.5223388671875	2	659.330264	1316.64598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.204	1	49.204	48.704	49.704	0								0	0	0	0.94538	1	18743	18743		8.7454	0	1		+		8915	11081	4917	4955	8640	8640					0.00031818564639252145
EEVKPLPA	8	Unmodified	_EEVKPLPA_					0	0	0		EGFLAM|p.D436Ifs*26|2|0.08|ENSG00000164318|chr5:38409056-38409056|G/-|frameshift_variant;nc|ENSG00000164318|Q63HQ2-4|EGFLAM;ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM	EGFLAM|p.D436Ifs*26|2|0.08|ENSG00000164318|chr5:38409056-38409056|G/-|frameshift_variant	EGFLAM|p.D436Ifs*26|2|0.08|ENSG00000164318|chr5:38409056-38409056|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	882.4910278320312	1	882.49311	881.485833	0.55188	0.00048703	-2.1739	-0.0019184	-1.622	-0.0014314	882.4913137544478	48.537	0.30881	48.537	48.357	48.666	0					7	5	2	0	0	0	0.84759	1	18501	18501		5.7604	0	1	16420000			8916	761	4918	4956	8641	8641					0.040349801488900994
EEVKTGKCA	9	Unmodified	_EEVKTGKCA_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7423095703125	2	482.742042	963.469531	0.048396	2.3363E-05	0.15192	7.3339E-05	0.20032	9.6702E-05	482.7420446715414	11.687	0.33706	11.405	11.204	11.541	-0.28186					22	13	2	0	0	0	0.21258	1	3739	3739		39.95	16.801	1	1423600			8917	6029	4919	4957	8642	8642					-0.013664690794939816
EEVKTGKCA	9	Unmodified	_EEVKTGKCA_					0	0	0		ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	ENSG00000189241|ENST00000368608|TSPYL1	MULTI-MSMS	HCT116MG_D190212_S2	2	482.74151611328125	2	482.742042	963.469531	0.049379	2.3837E-05	0.18565	8.9621E-05	0.23503	0.00011346	482.74207981051444	15.176	0.36501	14.849	14.706	15.071	-0.32684					13	6	3	0	0	0	0.0034381	1	5031	5031		160.69	102.01	1	11393000			8918	6029	4919	4957	8643	8643					-0.013664690794939816
EEVKTRKPK	9	Unmodified	_EEVKTRKPK_					0	0	0		ENSG00000170074|ENST00000614127|FAM153A;nc|ENSG00000170074|Q9UHL3|FAM153A	ENSG00000170074|ENST00000614127|FAM153A	ENSG00000170074|ENST00000614127|FAM153A	MSMS	HCT116MG_D190212_S3	3	372.2226257324219	3	372.224146	1113.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.462	1	34.167	33.667	34.667	-0.29475								0	0	0	0.76954	1	12685	12685		2.4985	1.427	1				8919	5112	4920	4958	8644	8644					0.09832792288693781
EEVKVSTM	8	Unmodified	_EEVKVSTM_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-MSMS	HCT116MG_D190212_S3	3	461.7311706542969	2	461.731143	921.447733	0.36231	0.00016729	-0.069991	-3.2317E-05	0.29232	0.00013497	461.7309882826859	27.993	0.6257	27.805	27.621	28.246	-0.18847					23	11	3	0	0	0	0.76189	1	10236	10236		15.847	1.0089	1	36287000			8920	9385	4921	4959	8645	8645					-0.01613273828070305
EEVLLTFK	8	Unmodified	_EEVLLTFK_					0	0	0		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;ADGRG2|p.L25I|1|0.14|ENSG00000173698|chrX:19068762-19068762|G/T|missense_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	489.7795104980469	2	489.778951	977.543348	0.39313	0.00019255	0.15847	7.7614E-05	0.5516	0.00027016	489.77901305638886	45.686	0.31468	45.686	45.503	45.818	0					11	5	3	0	0	0	0.047269	1	17318	17318		126.57	30.281	1	41289000			8921	59	4922	4960	8646	8646					0.053678223544807224
EEVLLTFK	8	Unmodified	_EEVLLTFK_					0	0	0		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;ADGRG2|p.L25I|1|0.14|ENSG00000173698|chrX:19068762-19068762|G/T|missense_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	489.77899169921875	2	489.778951	977.543348	0.23153	0.0001134	0.091838	4.498E-05	0.32337	0.00015838	489.7789060882205	45.717	0.51313	45.615	45.453	45.966	-0.1014					20	9	3	0	0	0	0.027354	1	17381	17381		147.06	47.26	1	220020000			8922	59	4922	4960	8647	8647					0.053678223544807224
EEVLLTFK	8	Unmodified	_EEVLLTFK_					0	0	0		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;ADGRG2|p.L25I|1|0.14|ENSG00000173698|chrX:19068762-19068762|G/T|missense_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	978.551513671875	1	978.550625	977.543348	0.6615	0.00064731	-0.37676	-0.00036867	0.28474	0.00027863	978.5501044491342	45.734	0.30775	45.632	45.453	45.761	-0.1014					8	5	2	0	0	0	0.027354	1	17404	17404		147.06	35.772	1	29813000			8923	59	4922	4960	8648	8648					0.053678223544807224
EEVLLTFK	8	Unmodified	_EEVLLTFK_					0	0	0		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;ADGRG2|p.L25I|1|0.14|ENSG00000173698|chrX:19068762-19068762|G/T|missense_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	489.7790832519531	2	489.778951	977.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.965	1	45.654	45.154	46.154	-0.31128								0	0	0	3.5958E-07	1	17225	17225		147.06	58.156	1				8924	59	4922	4960	8649	8649					0.053678223544807224
EEVLLTFK	8	Unmodified	_EEVLLTFK_					0	0	0		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;ADGRG2|p.L25I|1|0.14|ENSG00000173698|chrX:19068762-19068762|G/T|missense_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	489.77911376953125	2	489.778951	977.543348	0.088924	4.3553E-05	0.41289	0.00020222	0.50181	0.00024578	489.7791862096647	46.064	0.23719	45.692	45.501	45.739	-0.37206					9	7	2	0	0	0	0.095352	1	17004	17004		96.111	17.962	1	9858700			8925	59	4922	4960	8650	8650					0.053678223544807224
EEVLLTFK	8	Unmodified	_EEVLLTFK_					0	0	0		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;ADGRG2|p.L25I|1|0.14|ENSG00000173698|chrX:19068762-19068762|G/T|missense_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	978.550625	977.543348	0.67237	0.00065795	0.0035352	3.4594E-06	0.6759	0.00066141	978.5508462593905	45.686	0.21014	45.686	45.555	45.765	0	0.026861	0.00013626	NaN	147.06	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6258500			8926	59	4922	4960							0.053678223544807224
EEVLRKFRA	9	Unmodified	_EEVLRKFRA_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	383.2241516113281	3	383.224257	1146.65094	0.025866	9.9124E-06	-0.13781	-5.2813E-05	-0.11195	-4.2901E-05	383.2240994963227	27.145	0.31684	26.792	26.606	26.923	-0.35254					12	5	3	0	0	0	0.14362	1	9849	9849		49.554	22.331	1	77443000			8927	674	4923	4961	8651	8651					0.0834821200855913
EEVLRKFRA	9	Unmodified	_EEVLRKFRA_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	574.3326416015625	2	574.332747	1146.65094	0.50039	0.00028739	1.478	0.00084884	1.9784	0.0011362	574.3338805623747	27.145	0.52331	26.792	26.554	27.077	-0.35254					13	9	2	0	0	0	0.20521	1	9851	9851		51.63	24.001	1	56987000			8928	674	4923	4961	8652	8652					0.0834821200855913
EEVLRKFRA	9	Unmodified	_EEVLRKFRA_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	574.3331298828125	2	574.332747	1146.65094	0.52601	0.00030211	-0.045507	-2.6136E-05	0.48051	0.00027597	574.3326969248184	26.846	0.36456	26.697	26.515	26.88	-0.14924					11	6	3	0	0	0	0.07468	1	9652	9652		78.728	49.646	1	20061000			8929	674	4923	4961	8653	8653					0.0834821200855913
EEVLRKFRA	9	Unmodified	_EEVLRKFRA_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	383.55859375	3	383.224257	1146.65094	-0.0046893	-1.797E-06	-0.15537	-5.9542E-05	-0.16006	-6.1339E-05	383.22411039847935	26.846	0.36456	26.697	26.515	26.88	-0.14924					16	6	3	0	0	0	0.26031	1	9654	9654		34.932	13.342	1	45290000			8930	674	4923	4961	8654	8654					0.0834821200855913
EEVLRKFRA	9	Unmodified	_EEVLRKFRA_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	574.3329467773438	2	574.332747	1146.65094	0.52578	0.00030197	0.010816	6.212E-06	0.53659	0.00030818	574.3327658086823	27.08	0.20802	26.768	26.639	26.847	-0.3114					6	3	2	0	0	0	0.11498	1	9682	9682		69.105	42.221	1	9940200			8931	674	4923	4961	8655	8655					0.0834821200855913
EEVLRKFRA	9	Unmodified	_EEVLRKFRA_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	383.55853271484375	3	383.224257	1146.65094	0.093672	3.5897E-05	-0.32322	-0.00012387	-0.22955	-8.7968E-05	383.22402539022687	27.08	0.26	26.768	26.639	26.899	-0.3114					11	4	3	0	0	0	0.26031	1	9687	9687		34.932	19.975	1	19459000			8932	674	4923	4961	8656	8656					0.0834821200855913
EEVLRKFRA	9	Unmodified	_EEVLRKFRA_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		3	383.224257	1146.65094	-0.12724	-4.876E-05	-0.30655	-0.00011748	-0.43378	-0.00016624	383.22401186442073	26.669	0.20823	26.669	26.553	26.761	0	-0.062379	-0.00012768	NaN	49.554	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7395600			8933	674	4923	4961							0.0834821200855913
EEVQAMQSF	9	Unmodified	_EEVQAMQSF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	HCT116MG_D190212_S2	2	534.3485107421875	2	534.736957	1067.45936	0.4936	0.00026395	0.097871	5.2335E-05	0.59147	0.00031628	534.736976860376	41.955	0.20763	41.887	41.808	42.016	-0.068199					6	3	2	0	0	0	0.19551	1	15892	15892		26.884	17.536	1	9475600			8934	1474	4924	4962	8657	8657					-0.07167076804739736
EEVQTLQA	8	Unmodified	_EEVQTLQA_					0	0	0		CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant;ENSG00000165813|ENST00000369287|CCDC186;ENST00000497592.1_1_10:115890387-115891086:-|nuORF;ENST00000490661.1_1_10:115890885-115891837:-|nuORF	CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant	CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	459.2322998046875	2	459.232364	916.450176	0.22541	0.00010352	0.16263	7.4686E-05	0.38804	0.0001782	459.2323289482984	17.947	0.20801	18.023	17.893	18.101	0.076334					6	3	2	0	0	0	0.67912	1	6086	6086		25.399	0	1	4935700			8935	348	4925	4963	8658	8658					-0.011391020987616685
EEVRAGAVSA	10	Unmodified	_EEVRAGAVSA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513410.1_1_3:128982773-128985943:+|nuORF	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	494.7566223144531	2	494.756538	987.498523	0.32015	0.0001584	-0.025936	-1.2832E-05	0.29421	0.00014556	494.75648264695593	22.975	0.3122	22.975	22.845	23.158	0					8	5	2	0	0	0	0.023242	1	8170	8170		114.5	58.32	1	23248000			8936	5641	4926	4964	8659	8659					0.004273915411431517
EEVRAGAVSA	10	Unmodified	_EEVRAGAVSA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513410.1_1_3:128982773-128985943:+|nuORF	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7568359375	2	494.756538	987.498523	0.26613	0.00013167	0.30428	0.00015054	0.57041	0.00028221	494.7566967997938	23.397	0.41503	23.011	22.778	23.193	-0.3852					11	7	2	0	0	0	0.044769	1	8358	8358		91.085	49.245	1	98101000			8937	5641	4926	4964	8660	8660					0.004273915411431517
EEVRAGAVSA	10	Unmodified	_EEVRAGAVSA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513410.1_1_3:128982773-128985943:+|nuORF	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S2	2	988.5057983398438	1	988.5058	987.498523	0.77595	0.00076703	-0.014347	-1.4183E-05	0.7616	0.00075285	988.505486625918	23.43	0.20689	23.045	22.882	23.089	-0.3852					5	3	2	0	0	0	0.013379	1	8363	8363		135.86	73.291	1	15721000			8938	5641	4926	4964	8661	8661					0.004273915411431517
EEVRAGAVSA	10	Unmodified	_EEVRAGAVSA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513410.1_1_3:128982773-128985943:+|nuORF	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	494.7566223144531	2	494.756538	987.498523	0.18166	8.9875E-05	0.21819	0.00010795	0.39985	0.00019783	494.75655665769995	22.992	0.35848	22.973	22.797	23.156	-0.018869					17	6	4	0	0	0	0.017977	1	8096	8096		124.95	77.204	1	45048000			8939	5641	4926	4964	8662	8662					0.004273915411431517
EEVRAGAVSA	10	Unmodified	_EEVRAGAVSA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513410.1_1_3:128982773-128985943:+|nuORF	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S4	4	494.75665283203125	2	494.756538	987.498523	0.11831	5.8537E-05	0.19672	9.7327E-05	0.31503	0.00015586	494.7565602256921	23.203	0.36755	22.955	22.8	23.168	-0.24775					11	6	3	0	0	0	0.05194	1	8124	8124		85.764	45.815	1	7797700			8940	5641	4926	4964	8663	8663					0.004273915411431517
EEVRAGAVSA	10	Unmodified	_EEVRAGAVSA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513410.1_1_3:128982773-128985943:+|nuORF	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	988.5058	987.498523	0.64423	0.00063683	-0.27256	-0.00026943	0.37167	0.0003674	988.5052624284423	22.974	0.15585	22.955	22.844	22.999	-0.018869	-0.044654	-7.4557E-05	NaN	135.86	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2132300			8941	5641	4926	4964							0.004273915411431517
EEVRQSVTP	9	Unmodified	_EEVRQSVTP_					0	0	0		ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	522.76953125	2	522.769645	1043.52474	0.31325	0.00016376	0.21014	0.00010986	0.52339	0.00027361	522.7697139638907	23.177	0.5722	22.792	22.362	22.934	-0.38521					22	10	3	0	0	0	0.053544	1	8262	8262		72.968	31.128	1	12618000			8942	1169	4927	4965	8664	8664					0.004716607126283634
EEVRQSVTP	9	Unmodified	_EEVRQSVTP_					0	0	0		ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	MSMS	HCT116MG_D190212_S3	3	522.7701416015625	2	522.769645	1043.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.662	1	22.643	22.143	23.143	-0.018869								0	0	0	0.71969	1	7962	7962		18.135	4.6271	1				8943	1169	4927	4965	8665	8665					0.004716607126283634
EEVRQSVTP	9	Unmodified	_EEVRQSVTP_					0	0	0		ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	MSMS	HCT116MG_D190212_S4	4	522.769775390625	2	522.769645	1043.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.012	1	22.775	22.275	23.275	-0.23758								0	0	0	0.76694	1	8036	8036		11.64	2.2572	1				8944	1169	4927	4965	8666	8666					0.004716607126283634
EEVRRLEAE	9	Unmodified	_EEVRRLEAE_					0	0	0			REV__ENST00000474361.6_1_X:1719073-1720484:+|nuORF	REV__ENST00000474361.6_1_X:1719073-1720484:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	377.5315246582031	3	377.531527	1129.57275	-0.2717	-0.00010258	0.12258	4.6277E-05	-0.14912	-5.6299E-05	377.5315516437326	15.945	0.47008	15.611	15.48	15.951	-0.33451					13	8	3	0	0	0	0.090581	1	5334	5334		47.732	7.0071	1	18129000	+		8945	14101	4928	4966	8667	8667					0.013147346326832121
EEVRRLEAE	9	Unmodified	_EEVRRLEAE_					0	0	0			REV__ENST00000474361.6_1_X:1719073-1720484:+|nuORF	REV__ENST00000474361.6_1_X:1719073-1720484:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	377.531527	1129.57275	-0.10648	-4.0199E-05	0.081275	3.0684E-05	-0.025203	-9.515E-06	377.53142345523264	15.666	0.15608	15.666	15.588	15.744	0	0.027553	-4.1633E-05	NaN	47.732	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5117400	+		8946	14101	4928	4966							0.013147346326832121
EEVRRLEAE	9	Unmodified	_EEVRRLEAE_					0	0	0			REV__ENST00000474361.6_1_X:1719073-1720484:+|nuORF	REV__ENST00000474361.6_1_X:1719073-1720484:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	377.531527	1129.57275	-0.2717	-0.00010258	0.12258	4.6277E-05	-0.14912	-5.6299E-05	377.5315516437326	15.945	0.47008	15.611	15.48	15.951	-0.33451	-0.027553	5.1456E-06	NaN	47.732	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18129000	+		8947	14101	4928	4966							0.013147346326832121
EEVRTLFVS	9	Unmodified	_EEVRTLFVS_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;ENSG00000166831|ENST00000300069|RBPMS2;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MSMS	HCT116MG_D190212_S2	2	540.2913208007812	2	540.290214	1078.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.867	1	31.618	31.118	32.118	-0.24883								0	0	0	0.76603	1	11771	11771		14.838	1.7958	1				8948	4316	4929	4967	8668	8668					0.02973421752108152
EEVSVTVKA	9	Unmodified	_EEVSVTVKA_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	HCT116MG_D190212_S1	1	481.2635803222656	2	481.263665	960.512776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.432	1	29.432	28.932	29.932	0								0	0	0	0.47756	1	10757	10757		29.841	8.3036	1				8949	3710	4930	4968	8669	8669					0.03094043969440463
EEVSVTVKA	9	Unmodified	_EEVSVTVKA_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	481.26373291015625	2	481.263665	960.512776	0.2426	0.00011675	-0.92833	-0.00044677	-0.68573	-0.00033002	481.2630591616623	29.77	0.61964	29.469	29.237	29.857	-0.30095					16	11	2	0	0	0	0.071914	1	10924	10924		63.961	17.94	1	20106000			8950	3710	4930	4968	8670	8670					0.03094043969440463
EEVTASQVAA	10	Unmodified	_EEVTASQVAA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	502.7483215332031	2	502.748379	1003.4822	0.38833	0.00019523	0.52563	0.00026426	0.91396	0.00045949	502.74833072646504	26.829	0.26126	26.477	26.345	26.606	-0.35254					7	4	2	0	0	0	0.19283	1	9754	9754		60.074	34.675	1	19276000			8951	5492	4931	4969	8671	8671					-0.01939734415611838
EEVTASQVAA	10	Unmodified	_EEVTASQVAA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	502.74853515625	2	502.748379	1003.4822	0.46919	0.00023588	-0.1445	-7.2649E-05	0.32468	0.00016323	502.7481536145607	26.794	0.46844	26.645	26.359	26.827	-0.14924					12	8	2	0	0	0	0.042873	1	9629	9629		92.491	44.897	1	15606000			8952	5492	4931	4969	8672	8672					-0.01939734415611838
EEVTASQVAA	10	Unmodified	_EEVTASQVAA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	1004.4893798828125	1	1004.48948	1003.4822	0.65273	0.00065566	-0.24365	-0.00024474	0.40908	0.00041092	1004.489138701118	26.794	0.26023	26.645	26.515	26.775	-0.14924					7	4	2	0	0	0	0.042873	1	9638	9638		92.491	19.523	1	5856300			8953	5492	4931	4969	8673	8673					-0.01939734415611838
EEVTASQVAA	10	Unmodified	_EEVTASQVAA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S4	4	502.7487487792969	2	502.748379	1003.4822	0.3204	0.00016108	0.14772	7.4267E-05	0.46812	0.00023535	502.7484018377351	26.908	0.25957	26.597	26.431	26.69	-0.3114					8	4	2	0	0	0	0.095673	1	9600	9600		74.929	19.426	1	4690100			8954	5492	4931	4969	8674	8674					-0.01939734415611838
EEVTKDTP	8	Unmodified	_EEVTKDTP_					0	0	0			REV__ENSG00000255223|ENST00000528616|OR5M11	REV__ENSG00000255223|ENST00000528616|OR5M11	MULTI-MSMS	HCT116MG_D190212_S3	3	919.1470336914062	1	918.441468	917.434192	0.81983	0.00075297	-0.023886	-2.1938E-05	0.79595	0.00073103	918.4413495766398	43.572	0.52115	43.266	43.084	43.605	-0.30616					22	9	3	0	0	0	0.43493	1	16197	16197		46.921	2.5139	1	32377000	+		8955	14394	4932	4970	8675	8675					-0.027828083356666866
EEVVIHEF	8	Unmodified	_EEVVIHEF_					0	0	0		ENST00000483596.5_1_10:23220925-23250957:+|nuORF;ARMC3|p.L325Wfs*37|1|0.45|ENSG00000165309|chr10:22981394-22981394|T/-|frameshift_variant;nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;ARMC3|p.E689Kfs*5|1|0.26|ENSG00000165309|chr10:23030608-23030608|A/-|frameshift_variant;ARMC3|p.E689Rfs*20|1|0.17|ENSG00000165309|chr10:23030607-23030608|-/A|frameshift_variant;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3	ENST00000483596.5_1_10:23220925-23250957:+|nuORF	ENST00000483596.5_1_10:23220925-23250957:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	501.25091552734375	2	501.250557	1000.48656	0.73502	0.00036843	0.34002	0.00017044	1.075	0.00053887	501.25071813339355	42.677	0.31129	42.607	42.481	42.793	-0.069981					13	5	3	0	0	0	0.070772	1	16171	16171		101.72	7.8386	1	43014000			8956	190	4933	4971	8676	8676					-0.013662252020480992
EEVVPPTGQPV	11	Unmodified	_EEVVPPTGQPV_					0	0	0			REV__ENSG00000167987|ENST00000301765|VPS37C	REV__ENSG00000167987|ENST00000301765|VPS37C	MULTI-MSMS	HCT116MG_D190212_S2	2	576.3005981445312	2	576.300778	1150.587	0.5764	0.00033218	-0.52015	-0.00029976	0.056248	3.2416E-05	576.3004160828814	43.829	0.20621	43.75	43.607	43.813	-0.078373					6	3	2	0	0	0	0.72953	1	16649	16649		13.906	0	1	20125000	+		8957	13177	4934	4972	8677	8677					0.01773387060939058
EEVVREVC	8	Unmodified	_EEVVREVC_					0	0	0		nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-7|APP	nc|ENSG00000142192|P05067-7|APP	MULTI-MSMS	HCT116MG_D190212_S2	2	482.2386779785156	2	481.734217	961.453881	0.19322	9.3078E-05	0.61965	0.00029851	0.81287	0.00039159	481.7342330703884	17.614	0.41776	17.258	17.023	17.441	-0.35647					12	7	2	0	0	0	0.31873	1	5991	5991		57.471	5.203	1	13798000			8958	3748	4935	4973	8678	8678					-0.028387555965423417
EEVVREVC	8	Unmodified	_EEVVREVC_					0	0	0		nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-7|APP	nc|ENSG00000142192|P05067-7|APP	MULTI-MSMS	HCT116MG_D190212_S3	3	481.7342834472656	2	481.734217	961.453881	0.11044	5.3205E-05	0.022817	1.0992E-05	0.13326	6.4197E-05	481.73419120042723	16.299	1.1966	16.384	16.237	17.434	0.085424					44	22	4	0	0	0	0.55794	1	5562	5562		36.044	7.5574	1	15399000			8959	3748	4935	4973	8679	8679					-0.028387555965423417
EEVVREVC	8	Unmodified	_EEVVREVC_					0	0	0		nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-7|APP	nc|ENSG00000142192|P05067-7|APP	MSMS	HCT116MG_D190212_S4	4	481.73419189453125	2	481.734217	961.453881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.704	1	16.537	16.037	17.037	-0.16664								0	0	0	0.40715	1	5487	5487		48.346	0	1				8960	3748	4935	4973	8680	8680					-0.028387555965423417
EEVVRREEA	9	Unmodified	_EEVVRREEA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	HCT116MG_D190212_S2	2	558.7859497070312	2	558.785827	1115.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.94	1	17.584	17.084	18.084	-0.35647								0	0	0	0.038892	1	6136	6136		74.2	32.36	1				8961	5492	4936	4974	8681	8681					0.003944481156167967
EEVVSARVAP	10	Unmodified	_EEVVSARVAP_					0	0	0			REV__ENST00000509077.1_1_3:75378534-75378612:-|nuORF	REV__ENST00000509077.1_1_3:75378534-75378612:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	529.4073486328125	2	528.787838	1055.56112	0.29455	0.00015575	0.047618	2.518E-05	0.34216	0.00018093	528.787727733057	15.216	0.20859	14.889	14.758	14.967	-0.32684					5	3	2	0	0	0	0.75427	1	4995	4995		15.847	3.3156	1	714630	+		8962	16164	4937	4975	8682	8682					0.03556537609347288
EEVVSREV	8	Unmodified	_EEVVSREV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MSMS	HCT116MG_D190212_S1	1	473.74554443359375	2	473.745639	945.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.595	1	25.595	25.095	26.095	0								0	0	0	3.5958E-07	1	9213	9213		147.06	75.926	1				8963	4464	4938	4976	8683	8683					0.0018058679257819676
EEVVSREV	8	Unmodified	_EEVVSREV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S2	2	946.4845581054688	1	946.484002	945.476725	0.86144	0.00081534	-0.4394	-0.00041589	0.42204	0.00039945	946.483497570055	25.997	0.20783	25.628	25.498	25.706	-0.36914					6	3	2	0	0	0	0.0166	1	9398	9398		223.06	123.26	1	21370000			8964	4464	4938	4976	8684	8684					0.0018058679257819676
EEVYQTAKA	9	Unmodified	_EEVYQTAKA_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;DHRS3|p.R111W|1|0.34|ENSG00000162496|chr1:12580531-12580531|G/A|missense_variant;ENST00000482265.1_1_1:12640388-12676590:-|nuORF;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MSMS	HCT116MG_D190212_S1	1	519.7479248046875	2	519.758746	1037.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.526	1	22.526	22.026	23.026	0								0	0	0	0.32687	1	7979	7979		38.176	17.722	1				8965	4527	4939	4977	8685	8685					-0.014311440359506378
EEVYQTAKA	9	Unmodified	_EEVYQTAKA_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;DHRS3|p.R111W|1|0.34|ENSG00000162496|chr1:12580531-12580531|G/A|missense_variant;ENST00000482265.1_1_1:12640388-12676590:-|nuORF;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	HCT116MG_D190212_S2	2	520.261474609375	2	519.758746	1037.50294	0.25653	0.00013333	0.30905	0.00016063	0.56558	0.00029396	519.7585610123498	22.958	0.20791	22.573	22.466	22.674	-0.3852					6	3	2	0	0	0	0.29516	1	8187	8187		31.268	1.0435	1	10049000			8966	4527	4939	4977	8686	8686					-0.014311440359506378
EEVYQTAKA	9	Unmodified	_EEVYQTAKA_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3;DHRS3|p.R111W|1|0.34|ENSG00000162496|chr1:12580531-12580531|G/A|missense_variant;ENST00000482265.1_1_1:12640388-12676590:-|nuORF;nc|ENSG00000162496|O75911-2|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2498779296875	2	519.758746	1037.50294	0.23222	0.0001207	0.25937	0.00013481	0.49159	0.00025551	519.7586392201623	22.507	0.41684	22.488	22.231	22.647	-0.018871					15	7	3	0	0	0	0.082877	2	7885	7885;7914		61.602	27.499	1	9369000			8967	4527	4939	4977	8687;8688	8687					-0.014311440359506378
EEVYRKPAE	9	Unmodified	_EEVYRKPAE_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	HCT116MG_D190212_S3	3	561.2871704101562	2	560.785296	1119.55604	0.45077	0.00025279	-0.57057	-0.00031997	-0.11979	-6.7178E-05	560.7853576913066	45.224	0.20875	44.915	44.785	44.993	-0.30927					7	3	3	0	0	0	0.20889	1	16945	16945		24.021	0	1	6415300			8968	3978	4940	4978	8689	8689					0.0010423374669699115
EEVYRKPAE	9	Unmodified	_EEVYRKPAE_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MATCH	HCT116MG_D190212_S2	2		2	560.785296	1119.55604	0.55554	0.00031154	-0.41521	-0.00023284	0.14033	7.8698E-05	560.7850221681438	44.997	0.26109	44.905	44.735	44.996	-0.092476	-0.0052217	1.4295E-05	NaN	24.021	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8468100			8969	3978	4940	4978							0.0010423374669699115
EEWGQLKAP	9	Unmodified	_EEWGQLKAP_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;ENST00000562621.1_1_15:73048204-73048867:-|nuORF;ENST00000569534.5_1_15:73044684-73076051:-|nuORF	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2698974609375	2	529.269281	1056.52401	0.6176	0.00032688	0.30641	0.00016217	0.92401	0.00048905	529.26953174344	40.749	0.25735	40.679	40.519	40.777	-0.069626					8	4	2	0	0	0	0.027442	1	15391	15391		88.954	23.719	1	17053000			8970	4409	4941	4979	8690	8690					-0.0019913393641672883
EEWGQLKAP	9	Unmodified	_EEWGQLKAP_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;ENST00000562621.1_1_15:73048204-73048867:-|nuORF;ENST00000569534.5_1_15:73044684-73076051:-|nuORF	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2696533203125	2	529.269281	1056.52401	0.61395	0.00032494	0.24039	0.00012723	0.85433	0.00045217	529.2694720399876	41.012	0.26051	40.71	40.527	40.788	-0.30185					7	4	2	0	0	0	0.016701	2	15250	15219;15250		99.799	24.87	1	5424700			8971	4409	4941	4979	8691;8692	8692					-0.0019913393641672883
EEWHGHVTA	9	Unmodified	_EEWHGHVTA_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S1	1	533.2411499023438	2	533.241055	1064.46756	0.34733	0.00018521	0.23668	0.00012621	0.58401	0.00031142	533.24108043352	23.758	0.36609	23.758	23.575	23.941	0					17	6	4	0	0	0	8.7331E-05	1	8477	8477		252.8	252.8	1	90142000			8972	5287	4942	4980	8693	8693					-0.0620976177308421
EEWHGHVTA	9	Unmodified	_EEWHGHVTA_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S1	1	355.8297424316406	3	355.829796	1064.46756	-0.090469	-3.2192E-05	0.1614	5.743E-05	0.070928	2.5238E-05	355.8297817276611	23.758	0.26167	23.758	23.627	23.889	0					9	4	3	0	0	0	0.34272	1	8497	8497		26.268	26.268	1	21448000			8973	5287	4942	4980	8694	8694					-0.0620976177308421
EEWHGHVTA	9	Unmodified	_EEWHGHVTA_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S2	2	533.2412109375	2	533.241055	1064.46756	0.63291	0.0003375	-0.24268	-0.00012941	0.39024	0.00020809	533.2409028343311	24.333	0.41692	23.953	23.77	24.187	-0.38003					18	7	3	0	0	0	7.9226E-08	1	8698	8698		252.8	252.8	1	454580000			8974	5287	4942	4980	8695	8695					-0.0620976177308421
EEWHGHVTA	9	Unmodified	_EEWHGHVTA_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S2	2	355.8296203613281	3	355.829796	1064.46756	0.028067	9.9869E-06	-0.17669	-6.287E-05	-0.14862	-5.2883E-05	355.829681267328	24.333	0.41692	23.953	23.77	24.187	-0.38003					14	7	3	0	0	0	0.22946	1	8715	8715		38.176	38.176	1	92852000			8975	5287	4942	4980	8696	8696					-0.0620976177308421
EEWHGHVTA	9	Unmodified	_EEWHGHVTA_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S2	2	1065.4752197265625	1	1065.47483	1064.46756	0.7174	0.00076437	-0.29343	-0.00031264	0.42397	0.00045173	1065.4745589625861	24.333	0.26031	23.953	23.77	24.03	-0.38003					9	4	3	0	0	0	0.0082095	1	8722	8722		144.35	108.22	1	37968000			8976	5287	4942	4980	8697	8697					-0.0620976177308421
EEWHGHVTA	9	Unmodified	_EEWHGHVTA_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2413330078125	2	533.241055	1064.46756	0.4225	0.00022529	-0.015996	-8.5297E-06	0.4065	0.00021676	533.2410602862603	23.776	0.41698	23.714	23.53	23.947	-0.061449					24	7	5	0	0	0	8.7331E-05	1	8411	8411		252.8	199.23	1	56601000			8977	5287	4942	4980	8698	8698					-0.0620976177308421
EEWHGHVTA	9	Unmodified	_EEWHGHVTA_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S3	3	355.82977294921875	3	355.829796	1064.46756	-0.14462	-5.146E-05	0.18409	6.5505E-05	0.039471	1.4045E-05	355.8298432539061	23.774	0.36492	23.712	23.582	23.947	-0.061449					10	6	2	0	0	0	0.34272	1	8418	8418		26.268	26.268	1	14682000			8978	5287	4942	4980	8699	8699					-0.0620976177308421
EEWHGHVTA	9	Unmodified	_EEWHGHVTA_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S4	4	533.2413330078125	2	533.241055	1064.46756	0.56513	0.00030135	-0.013504	-7.201E-06	0.55163	0.00029415	533.2409976698546	24.117	0.2597	23.859	23.729	23.989	-0.25816					9	4	3	0	0	0	0.0068427	1	8484	8484		136.33	109.45	1	9222900			8979	5287	4942	4980	8700	8700					-0.0620976177308421
EEWHHYVL	8	Unmodified	_EEWHHYVL_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	557.2628173828125	2	556.761623	1111.50869	0.12922	7.1942E-05	-0.65439	-0.00036434	-0.52517	-0.0002924	557.2623453184366	39.863	0.36083	39.79	39.584	39.945	-0.072838					11	6	2	0	0	0	0.06783	1	15047	15047		104.31	79.637	1	19046000			8980	5206	4943	4981	8701	8701					-0.0426000073364321
EEWKFDTL	8	Unmodified	_EEWKFDTL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	HCT116MG_D190212_S1	1	534.255615234375	2	534.25584	1066.49713	0.25162	0.00013443	-0.019548	-1.0444E-05	0.23207	0.00012398	534.255747619234	51.34	0.25697	51.34	51.194	51.451	0					12	4	4	0	0	0	0.012121	1	19607	19607		160.52	106.68	1	117980000			8981	3727	4944	4982	8702	8702					-0.03346242547604561
EEWKFDTL	8	Unmodified	_EEWKFDTL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	HCT116MG_D190212_S1	1	1067.5052490234375	1	1067.5044	1066.49713	0.59517	0.00063535	-0.76955	-0.00082149	-0.17437	-0.00018614	1067.5044855707883	51.375	0.25697	51.375	51.194	51.451	0					7	4	2	0	0	0	0.044506	1	19638	19638		129.77	58.639	1	20528000			8982	3727	4944	4982	8703	8703					-0.03346242547604561
EEWKFDTL	8	Unmodified	_EEWKFDTL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	HCT116MG_D190212_S2	2	534.255859375	2	534.25584	1066.49713	0.47015	0.00025118	0.0063395	3.3869E-06	0.47649	0.00025457	534.2558100095977	51.583	0.56585	51.399	51.218	51.784	-0.18369					32	10	5	0	0	0	0.012121	1	19777	19777		160.52	101.84	1	866080000			8983	3727	4944	4982	8704	8704					-0.03346242547604561
EEWKFDTL	8	Unmodified	_EEWKFDTL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	HCT116MG_D190212_S2	2	1067.5040283203125	1	1067.5044	1066.49713	0.5315	0.00056738	0.08367	8.9318E-05	0.61517	0.0006567	1067.504251285556	51.583	0.41111	51.399	51.218	51.629	-0.18369					19	7	4	0	0	0	0.061818	1	19787	19787		110.67	49.317	1	162720000			8984	3727	4944	4982	8705	8705					-0.03346242547604561
EEWKFDTL	8	Unmodified	_EEWKFDTL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2566528320312	2	534.25584	1066.49713	0.4537	0.00024239	-0.095994	-5.1285E-05	0.3577	0.00019111	534.2556864077935	51.72	0.51561	51.41	51.175	51.69	-0.30927					25	9	5	0	0	0	0.040608	1	19525	19525		134.3	75.617	1	88793000			8985	3727	4944	4982	8706	8706					-0.03346242547604561
EEWKFDTL	8	Unmodified	_EEWKFDTL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	1067.504638671875	1	1067.5044	1066.49713	0.52976	0.00056552	-0.7879	-0.00084109	-0.25815	-0.00027557	1067.5037162851388	51.72	0.31408	51.41	51.227	51.541	-0.30927					11	5	3	0	0	0	0.065113	1	19542	19542		107.19	58.841	1	10893000			8986	3727	4944	4982	8707	8707					-0.03346242547604561
EEWKFDTL	8	Unmodified	_EEWKFDTL_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	HCT116MG_D190212_S4	4	534.2559814453125	2	534.25584	1066.49713	0.42781	0.00022856	-0.036746	-1.9632E-05	0.39106	0.00020893	534.2557987303377	51.786	0.31173	51.436	51.254	51.566	-0.35028					14	5	3	0	0	0	0.02101	2	19286	19249;19286		152.41	91.055	1	25526000			8987	3727	4944	4982	8708;8709	8709					-0.03346242547604561
EEWKGSETY	9	Unmodified	_EEWKGSETY_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENST00000485862.5_1_9:130928478-130929503:-|nuORF;ENST00000461765.5_1_9:130928478-130929943:-|nuORF	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	HCT116MG_D190212_S1	1	564.74658203125	2	564.745836	1127.47712	0.62137	0.00035092	0.74204	0.00041907	1.3634	0.00076998	564.7462946864457	28.846	0.26107	28.846	28.746	29.007	0					6	4	2	0	0	0	0.37539	1	10538	10538		24.021	7.0783	1	6703100			8988	466	4945	4983	8710	8710					-0.08152038278217333
EEWKGYVV	8	Unmodified	_EEWKGYVV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000397390.3_1_9:19200870-19200993:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S1	1	505.2534484863281	2	505.2531	1008.49165	0.18533	9.3638E-05	0.24081	0.00012167	0.42614	0.00021531	505.25307524382765	42.512	0.36007	42.512	42.33	42.69	0					13	6	3	0	0	0	0.061239	1	16037	16037		111.29	75.243	1	99248000			8989	3464	4946	4984	8711	8711					-0.01225921339425895
EEWKGYVV	8	Unmodified	_EEWKGYVV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000397390.3_1_9:19200870-19200993:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S2	2	505.2459411621094	2	505.2531	1008.49165	0.54989	0.00027783	-0.12096	-6.1118E-05	0.42893	0.00021672	505.25295576381933	42.422	0.5711	42.352	42.17	42.741	-0.069984					30	10	4	0	0	0	0.061239	2	16034	16034;16057		111.29	75.243	1	287650000			8990	3464	4946	4984	8712;8713	8712					-0.01225921339425895
EEWKGYVV	8	Unmodified	_EEWKGYVV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000397390.3_1_9:19200870-19200993:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S2	2	1009.0499877929688	1	1009.49892	1008.49165	0.71261	0.00071938	0.41849	0.00042247	1.1311	0.0011419	1009.499443809427	42.421	0.36397	42.351	42.221	42.585	-0.069984					9	6	2	0	0	0	0.12671	2	16107	16060;16107		88.954	60.467	1	89913000			8991	3464	4946	4984	8714;8715	8715					-0.01225921339425895
EEWKGYVV	8	Unmodified	_EEWKGYVV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000397390.3_1_9:19200870-19200993:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S3	3	505.25341796875	2	505.2531	1008.49165	0.39311	0.00019862	0.0048393	2.4451E-06	0.39795	0.00020106	505.2531342120595	42.786	0.36365	42.482	42.3	42.663	-0.30472					16	6	4	0	0	0	0.061239	1	15931	15931		111.29	75.243	1	52101000			8992	3464	4946	4984	8716	8716					-0.01225921339425895
EEWKGYVV	8	Unmodified	_EEWKGYVV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000397390.3_1_9:19200870-19200993:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S3	3	1009.501220703125	1	1009.49892	1008.49165	0.67566	0.00068208	1.0405	0.0010503	1.7161	0.0017324	1009.499752581448	42.783	0.208	42.478	42.352	42.56	-0.30463					7	3	3	0	0	0	0.12671	1	15955	15955		88.954	60.467	1	7753000			8993	3464	4946	4984	8717	8717					-0.01225921339425895
EEWKGYVV	8	Unmodified	_EEWKGYVV_					0	0	0		ENSG00000137154|ENST00000380394|RPS6;ENST00000397390.3_1_9:19200870-19200993:-|nuORF	ENSG00000137154|ENST00000380394|RPS6	ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	HCT116MG_D190212_S4	4	505.2533264160156	2	505.2531	1008.49165	0.23411	0.00011828	0.34789	0.00017577	0.582	0.00029406	505.25318206801876	42.88	0.33013	42.505	42.306	42.636	-0.37493					13	6	3	0	0	0	0.12671	1	15767	15767		88.954	54.767	1	10831000			8994	3464	4946	4984	8718	8718					-0.01225921339425895
EEWKLDTL	8	Unmodified	_EEWKLDTL_					0	0	0		ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1	ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	517.2638549804688	2	517.263665	1032.51278	0.31643	0.00016368	0.26391	0.00013651	0.58034	0.00030019	517.2637411174971	49.569	0.20647	49.569	49.44	49.647	0					5	3	2	0	0	0	0.19352	1	18914	18914		74.929	36.955	1	21634000			8995	4307;4501	4947	4985	8719	8719					-0.00217956030564892
EEWKLDTL	8	Unmodified	_EEWKLDTL_					0	0	0		ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1	ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	517.26318359375	2	517.263665	1032.51278	-0.066803	-3.4555E-05	-0.21362	-0.0001105	-0.28042	-0.00014505	517.2634118027077	49.723	0.30589	49.559	49.33	49.636	-0.16369					9	5	2	0	0	0	0.061239	1	19040	19040		111.29	56.513	1	66835000			8996	4307;4501	4947	4985	8720	8720					-0.00217956030564892
EEWKLDTL	8	Unmodified	_EEWKLDTL_					0	0	0		ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1	ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MSMS	HCT116MG_D190212_S3	3	517.5300903320312	2	517.263665	1032.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.868	1	49.553	49.053	50.053	-0.31525								0	0	0	0.091106	1	18790	18790		85.272	10.849	1				8997	4307;4501	4947	4985	8721	8721					-0.00217956030564892
EEWKLDTL	8	Unmodified	_EEWKLDTL_					0	0	0		ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1	ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MSMS	HCT116MG_D190212_S3	3	517.26318359375	2	517.263665	1032.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.958	1	49.643	49.143	50.143	-0.31525								0	0	0	0.21862	1	18826	18826		65.235	12.967	1				8998	4307;4501	4947	4985	8722	8722					-0.00217956030564892
EEWKRLDPA	9	Unmodified	_EEWKRLDPA_					0	0	0		ZNF569|p.R30I|1|0.05|ENSG00000196437|chr19:37426305-37426305|C/A|missense_variant;ZNF569|p.K464Nfs*78|1|0.1|ENSG00000196437|chr19:37413266-37413266|T/-|frameshift_variant;ENSG00000196437|ENST00000316950|ZNF569	ZNF569|p.R30I|1|0.05|ENSG00000196437|chr19:37426305-37426305|C/A|missense_variant	ZNF569|p.R30I|1|0.05|ENSG00000196437|chr19:37426305-37426305|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	572.2919311523438	2	572.293288	1142.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.609	1	43.234	42.734	43.734	-0.37433								0	0	0	0.76818	1	16036	16036		7.2892	1.0834	1				8999	6070	4948	4986	8723	8723					0.006439399836153825
EEWLRWLLRT	10	Unmodified	_EEWLRWLLRT_					0	0	0			REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	MSMS	HCT116MG_D190212_S3	3	701.3855590820312	2	701.385511	1400.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.565	1	48.249	47.749	48.749	-0.31596								0	0	0	0.95351	1	18269	18269		3.9444	0	1		+		9000	16064	4949	4987	8724	8724					0.07212128134142404
EEWLWDYE	8	Unmodified	_EEWLWDYE_					0	0	0		nc|ENSG00000127325|Q8N1M1-5|BEST3;nc|ENSG00000127325|Q8N1M1-6|BEST3;ENSG00000127325|ENST00000330891|BEST3	nc|ENSG00000127325|Q8N1M1-5|BEST3	nc|ENSG00000127325|Q8N1M1-5|BEST3	MSMS	HCT116MG_D190212_S2	2	585.2426147460938	2	585.242929	1168.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.711	1	26.357	25.857	26.857	-0.35457								0	0	0	0.79325	1	9676	9676		23.148	7.8999	1				9001	2961	4950	4988	8725	8725					-0.10619136789910044
EEWLWDYE	8	Unmodified	_EEWLWDYE_					0	0	0		nc|ENSG00000127325|Q8N1M1-5|BEST3;nc|ENSG00000127325|Q8N1M1-6|BEST3;ENSG00000127325|ENST00000330891|BEST3	nc|ENSG00000127325|Q8N1M1-5|BEST3	nc|ENSG00000127325|Q8N1M1-5|BEST3	MULTI-MSMS	HCT116MG_D190212_S3	3	585.2423706054688	2	585.242929	1168.47131	0.58306	0.00034123	-0.53512	-0.00031318	0.047944	2.8059E-05	585.2425908790958	26.482	0.20831	26.333	26.203	26.411	-0.14924					6	3	2	0	0	0	0.69862	1	9515	9515		23.148	3.8914	1	3867000			9002	2961	4950	4988	8726	8726					-0.10619136789910044
EEWRSPSSH	9	Unmodified	_EEWRSPSSH_					0	0	0		ENST00000379542.9_1_6:10748006-10749500:+|nuORF;ENST00000473276.5_1_6:10748057-10756748:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	557.749755859375	2	557.749244	1113.48394	0.4909	0.0002738	-0.021465	-1.1972E-05	0.46944	0.00026183	557.7493157072913	21.219	0.42579	21.219	21.012	21.437	0					10	7	2	0	0	0	0.21251	1	7471	7471		39.957	24.11	1	3517500			9003	7554	4951	4989	8727	8727					-0.06826680606991431
EEWRSPSSH	9	Unmodified	_EEWRSPSSH_					0	0	0		ENST00000379542.9_1_6:10748006-10749500:+|nuORF;ENST00000473276.5_1_6:10748057-10756748:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.8453369140625	2	557.749244	1113.48394	0.25281	0.000141	0.432	0.00024095	0.68481	0.00038195	557.7494440958601	21.716	0.67447	21.331	20.857	21.531	-0.38503					24	12	3	0	0	0	0.1378	1	7566	7566		55.503	30.103	1	24210000			9004	7554	4951	4989	8728	8728					-0.06826680606991431
EEWRSPSSH	9	Unmodified	_EEWRSPSSH_					0	0	0		ENST00000379542.9_1_6:10748006-10749500:+|nuORF;ENST00000473276.5_1_6:10748057-10756748:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	557.7493896484375	2	557.749244	1113.48394	0.25716	0.00014343	0.38128	0.00021266	0.63844	0.00035609	557.7494257077497	21.053	0.46896	21.087	20.871	21.339	0.034472					14	8	2	0	0	0	0.0056012	1	7339	7339		132.38	81.525	1	4292700			9005	7554	4951	4989	8729	8729					-0.06826680606991431
EEWRSPSSH	9	Unmodified	_EEWRSPSSH_					0	0	0		ENST00000379542.9_1_6:10748006-10749500:+|nuORF;ENST00000473276.5_1_6:10748057-10756748:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	MSMS	HCT116MG_D190212_S4	4	557.7492065429688	2	557.749244	1113.48394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.444	1	21.226	20.726	21.726	-0.21832								0	0	0	0.56943	1	7403	7403		25.399	11.891	1				9006	7554	4951	4989	8730	8730					-0.06826680606991431
EEWSYSDF	8	Unmodified	_EEWSYSDF_					0	0	0		KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant;KNTC1|p.K1646Tfs*12|1|0.13|ENSG00000184445|chr12:122603073-122603074|AA/-|frameshift_variant;KNTC1|p.L1647Tfs*12|1|0.3|ENSG00000184445|chr12:122603072-122603073|-/A|frameshift_variant;ENSG00000184445|ENST00000333479|KNTC1	KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	KNTC1|p.K1646Nfs*2|2|0.35|ENSG00000184445|chr12:122603073-122603073|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	531.7067260742188	2	531.70618	1061.39781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.464	1	25.358	24.858	25.858	-0.10618								0	0	0	0.8837	1	9092	9092		13.508	0	1				9007	5771	4952	4990	8731	8731					-0.13043685232378266
EEWYGTQY	8	Unmodified	_EEWYGTQY_					0	0	0		ENST00000492362.1_1_10:94240585-94257457:-|nuORF;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENST00000478361.6_1_10:94240585-94297282:-|nuORF;IDE|p.L569Ffs*9|2|0.33|ENSG00000119912|chr10:92483287-92483288|-/A|frameshift_variant;IDE|p.L569Cfs*45|3|0.41|ENSG00000119912|chr10:92483288-92483288|A/-|frameshift_variant;ENSG00000119912|ENST00000265986|IDE	ENST00000492362.1_1_10:94240585-94257457:-|nuORF	ENST00000492362.1_1_10:94240585-94257457:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1075.43603515625	1	1075.43672	1074.42944	0.53049	0.00057051	0.2203	0.00023692	0.75079	0.00080743	1075.4372335460118	43.283	0.18925	42.978	42.896	43.085	-0.30472					7	4	2	0	0	0	0.04112	1	16165	16165		133.7	73.312	1	5333100			9008	2670	4953	4991	8732	8732					-0.10479692478406832
EEYAVCPD	8	Unmodified	_EEYAVCPD_					0	0	0		PGM1|p.G363Wfs*22|1|0.18|ENSG00000079739|chr1:63638736-63638737|-/T|frameshift_variant;PGM1|p.A512Pfs*33|1|0.23|ENSG00000079739|chr1:63654398-63654398|G/-|frameshift_variant;ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1	PGM1|p.G363Wfs*22|1|0.18|ENSG00000079739|chr1:63638736-63638737|-/T|frameshift_variant	PGM1|p.G363Wfs*22|1|0.18|ENSG00000079739|chr1:63638736-63638737|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	463.18218994140625	2	463.184026	924.353498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.484	1	33.194	32.694	33.694	-0.29013								0	0	0	0.8837	1	12290	12290		9.3474	3.587	1				9009	1386	4954	4992	8733	8733					-0.11170412650221806
EEYEARENF	9	Unmodified	_EEYEARENF_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	HCT116MG_D190212_S1	1	593.7540893554688	2	593.754192	1185.49383	0.56652	0.00033637	-0.94458	-0.00056085	-0.37807	-0.00022448	593.7534894078123	30.126	0.29863	30.126	29.997	30.296	0					9	5	2	0	0	0	0.0035183	1	11045	11045		157.8	89.714	1	11241000			9010	4306	4955	4993	8734	8734					-0.09149537392295315
EEYEARENF	9	Unmodified	_EEYEARENF_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MSMS	HCT116MG_D190212_S2	2	593.7536010742188	2	593.754192	1185.49383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.445	1	30.161	29.661	30.661	-0.28453								0	0	0	0.0046152	1	11193	11193		118.07	56.466	1				9011	4306	4955	4993	8735	8735					-0.09149537392295315
EEYEARENF	9	Unmodified	_EEYEARENF_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	HCT116MG_D190212_S3	3	593.753662109375	2	593.754192	1185.49383	0.55092	0.00032711	-0.64424	-0.00038252	-0.093319	-5.5409E-05	593.7538407131497	30.585	0.20887	30.336	30.251	30.46	-0.24946					11	7	2	0	0	0	0.0035381	2	11137	11133;11137		171.09	103.01	1	16908000			9012	4306	4955	4993	8736;8737	8737					-0.09149537392295315
EEYEAWKV	8	Unmodified	_EEYEAWKV_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MSMS	HCT116MG_D190212_S1	1	527.2479858398438	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.184	1	42.184	41.684	42.684	0								0	0	0	0.82692	1	15904	15904		20.454	1.0146	1				9013	3655	4956	4994	8738	8738					-0.042665290646709764
EEYEAWKV	8	Unmodified	_EEYEAWKV_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2481079101562	2	527.248015	1052.48148	0.43534	0.00022953	0.055837	2.944E-05	0.49117	0.00025897	527.2478912459702	42.007	0.31204	41.939	41.808	42.12	-0.068199					9	5	2	0	0	0	0.37603	1	15916	15916		52.268	5.3475	1	27981000			9014	3655	4956	4994	8739	8739					-0.042665290646709764
EEYEAWKV	8	Unmodified	_EEYEAWKV_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	527.2474975585938	2	527.248015	1052.48148	0.47588	0.00025091	-0.1082	-5.7048E-05	0.36768	0.00019386	527.2478079884321	42.369	0.20881	42.066	41.935	42.144	-0.30352					5	3	2	0	0	0	0.41924	1	15795	15795		48.346	16.229	1	4546100			9015	3655	4956	4994	8740	8740					-0.042665290646709764
EEYENLLKA	9	Unmodified	_EEYENLLKA_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant;ENST00000506617.1_1_6:7559609-7565825:+|nuORF	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	HCT116MG_D190212_S2	2	554.7879028320312	2	554.779679	1107.5448	0.49985	0.0002773	-2.0666	-0.0011465	-1.5667	-0.00086918	554.7782806215326	41.592	0.25661	41.523	41.396	41.653	-0.068199					9	4	3	0	0	0	0.22506	1	15696	15696		20.415	3.3016	1	45541000			9016	1620	4957	4995	8741	8741					-0.00466588347421748
EEYENLLKA	9	Unmodified	_EEYENLLKA_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant;ENST00000506617.1_1_6:7559609-7565825:+|nuORF	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S3	3	554.7777709960938	2	554.779679	1107.5448	0.31418	0.0001743	-0.99419	-0.00055156	-0.68002	-0.00037726	554.7788447546816	41.901	0.22695	41.599	41.45	41.677	-0.30257					10	4	3	0	0	0	0.020353	1	15598	15598		96.111	46.178	1	16027000			9017	1620	4957	4995	8742	8742					-0.00466588347421748
EEYENLLKA	9	Unmodified	_EEYENLLKA_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant;ENST00000506617.1_1_6:7559609-7565825:+|nuORF	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	HCT116MG_D190212_S1	1		2	554.779679	1107.5448	0.82803	0.00045937	-1.4582	-0.00080896	-0.63013	-0.00034958	554.7783760372631	41.68	0.15607	41.68	41.55	41.706	0	0.079325	7.7843E-05	NaN	96.111	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7246800			9018	1620	4957	4995							-0.00466588347421748
EEYERAQKA	9	Unmodified	_EEYERAQKA_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	562.272705078125	2	562.272552	1122.53055	0.30703	0.00017263	-0.31238	-0.00017564	-0.0053527	-3.0097E-06	562.2724988794861	15.701	0.20897	15.366	15.271	15.48	-0.33451					7	3	3	0	0	0	0.030039	1	5251	5251		86.332	32.499	1	3593700			9019	1027;18285	4958	4996	8743	8743					-0.025812407757030087
EEYEWKETA	9	Unmodified	_EEYEWKETA_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;SLC4A7|p.S1176Kfs*13|1|0.68|ENSG00000033867|chr3:27383191-27383192|-/C|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;SLC4A7|p.L1003Wfs*11|1|0.39|ENSG00000033867|chr3:27394600-27394600|A/-|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;ENST00000428005.1_1_3:27465485-27525617:-|nuORF	ENSG00000033867|ENST00000454389|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	MSMS	HCT116MG_D190212_S3	3	592.7589721679688	2	592.758943	1183.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.147	1	32.862	32.362	33.362	-0.28511								0	0	0	0.099502	1	12163	12163		56.177	23.872	1				9020	976	4959	4997	8744	8744					-0.08107769106754859
EEYEYFGY	8	Unmodified	_EEYEYFGY_					0	0	0		tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	550.217529296875	2	550.21638	1098.41821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.7309	1	7.7309	7.2309	8.2309	0								0	0	0	0.8837	1	2337	2337		0.79363	0.10326	1				9021	18552	4960	4998	8745	8745					-0.12706514572550986
EEYFMRETV	9	Unmodified	_EEYFMRETV_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000526700.5_1_16:70530266-70542451:-|nuORF;ST3GAL2-COG4|3|fusion;ST3GAL2-COG4|2|fusion	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	HCT116MG_D190212_S3	3	602.2714233398438	2	602.271164	1202.52777	0.63723	0.00038378	-0.077721	-4.6809E-05	0.55951	0.00033697	602.2708667188684	42.302	0.26033	41.999	41.832	42.092	-0.30352					6	4	2	0	0	0	0.11023	1	15778	15778		56.177	32.156	1	4215300			9022	1872	4961	4999	8746	8746					-0.06538832224896396
EEYGGFAEA	9	Unmodified	_EEYGGFAEA_					0	0	0		nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000503063.5_1_17:48625445-48628667:+|nuORF;SPATA20|p.S677Pfs*29|1|0.12|ENSG00000006282|chr17:50554367-50554367|T/-|frameshift_variant;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	nc|ENSG00000006282|Q8TB22-4|SPATA20	MULTI-MSMS	HCT116MG_D190212_S3	3	972.396728515625	1	972.394518	971.387241	0.60562	0.00058891	0.62578	0.00060851	1.2314	0.0011974	972.395007416272	38.057	0.25183	37.755	37.633	37.885	-0.30137					7	5	2	0	0	0	0.2682	1	14110	14110		34.102	10.954	1	5310900			9023	825	4962	5000	8747	8747					-0.0995966788681244
EEYGPELHVA	10	Unmodified	_EEYGPELHVA_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	HCT116MG_D190212_S1	1	572.75341796875	2	572.269478	1142.5244	0.44419	0.0002542	0.25387	0.00014528	0.69806	0.00039948	572.2697442947432	37.157	0.20744	37.157	36.99	37.197	0					5	3	2	0	0	0	0.4604	1	13886	13886		37.974	22.127	1	18511000			9024	3338	4963	5001	8748	8748					-0.041157590072543826
EEYGPELHVA	10	Unmodified	_EEYGPELHVA_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	HCT116MG_D190212_S2	2	572.27001953125	2	572.269478	1142.5244	0.27616	0.00015804	0.22441	0.00012842	0.50057	0.00028646	572.2696528134989	37.159	0.36113	37.056	36.871	37.232	-0.10318					17	6	4	0	0	0	0.024296	1	13920	13920		112.59	72.636	1	107060000			9025	3338	4963	5001	8749	8749					-0.041157590072543826
EEYGPELHVA	10	Unmodified	_EEYGPELHVA_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	HCT116MG_D190212_S3	3	572.2694091796875	2	572.269478	1142.5244	0.54554	0.00031219	-0.2544	-0.00014559	0.29113	0.00016661	572.269187235162	37.409	0.31197	37.107	36.925	37.237	-0.30137					11	5	3	0	0	0	0.019944	1	13838	13838		120.45	88.145	1	24205000			9026	3338	4963	5001	8750	8750					-0.041157590072543826
EEYGPELHVA	10	Unmodified	_EEYGPELHVA_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	HCT116MG_D190212_S4	4	572.2694702148438	2	572.269478	1142.5244	0.43148	0.00024692	-0.0026879	-1.5382E-06	0.42879	0.00024538	572.2696782624764	37.5	0.25684	37.116	36.926	37.183	-0.3839					10	4	3	0	0	0	0.17848	1	13768	13768		61.357	43.211	1	7830900			9027	3338	4963	5001	8751	8751					-0.041157590072543826
EEYIVKKL	8	Unmodified	_EEYIVKKL_					0	0	0		nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;SLC35F2|p.P336Lfs*25|1|0.48|ENSG00000110660|chr11:107792733-107792733|G/-|frameshift_variant;ENSG00000110660|ENST00000525815|SLC35F2	nc|ENSG00000110660|Q8IXU6-3|SLC35F2	nc|ENSG00000110660|Q8IXU6-3|SLC35F2	MULTI-MSMS	HCT116MG_D190212_S2	2	511.3001708984375	2	511.30005	1020.58555	0.55642	0.0002845	1.0335	0.00052842	1.5899	0.00081292	511.30073661688687	33.03	0.20834	32.819	32.739	32.948	-0.21135					5	3	2	0	0	0	0.068362	2	12270	12218;12270		103.75	39.512	1	34114000			9028	2254	4964	5002	8752;8753	8753					0.07607797762852897
EEYKAMVL	8	Unmodified	_EEYKAMVL_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;GGPS1|p.K245Nfs*10|2|0.26|ENSG00000152904|chr1:235342598-235342598|A/-|frameshift_variant;ENSG00000100814|ENST00000358932|CCNB1IP1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MSMS	HCT116MG_D190212_S2	2	491.74908447265625	2	491.749336	981.484119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.521	1	42.451	41.951	42.951	-0.069984								0	0	0	0.16719	1	16097	16097		71.922	13.243	1				9029	1733	4965	5003	8754	8754					-0.007363969313587404
EEYKAMVL	8	Unmodified	_EEYKAMVL_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;GGPS1|p.K245Nfs*10|2|0.26|ENSG00000152904|chr1:235342598-235342598|A/-|frameshift_variant;ENSG00000100814|ENST00000358932|CCNB1IP1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-SECPEP	HCT116MG_D190212_S3	3	491.255615234375	2	491.749336	981.484119	0.22776	0.000112	-0.008597	-4.2276E-06	0.21916	0.00010777	491.7491009940349	42.715	0.20804	42.412	42.301	42.509	-0.30352					5	3	2	0	0	0	0.18262	1	15905	15905		54.774	8.7526	1	2448300			9030	1733	4965	5003	8755	8755					-0.007363969313587404
EEYKAMVL	8	Unmodified	_EEYKAMVL_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;GGPS1|p.K245Nfs*10|2|0.26|ENSG00000152904|chr1:235342598-235342598|A/-|frameshift_variant;ENSG00000100814|ENST00000358932|CCNB1IP1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	491.749336	981.484119	0.36716	0.00018055	-0.75172	-0.00036966	-0.38456	-0.00018911	491.7488912154543	42.435	0.2083	42.365	42.221	42.429	-0.069981	-0.023164	-0.00042803	NaN	54.774	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15694000			9031	1733	4965	5003							-0.007363969313587404
EEYKKIKSP	9	Unmodified	_EEYKKIKSP_					0	0	0		RGS4|p.K113Rfs*15|1|0.38|ENSG00000117152|chr1:163073578-163073578|A/-|frameshift_variant;ENST00000491263.1_1_1:163042508-163043577:+|nuORF;nc|ENSG00000117152|P49798-5|RGS4;nc|ENSG00000117152|P49798-2|RGS4;ENSG00000117152|ENST00000367909|RGS4;nc|ENSG00000117152|P49798-3|RGS4	RGS4|p.K113Rfs*15|1|0.38|ENSG00000117152|chr1:163073578-163073578|A/-|frameshift_variant	RGS4|p.K113Rfs*15|1|0.38|ENSG00000117152|chr1:163073578-163073578|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	561.313720703125	2	561.313689	1120.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.534	1	18.17	17.67	18.67	-0.36325								0	0	0	0.020855	1	6375	6375		91.085	45.345	1				9032	2561	4966	5004	8756	8756					0.05734281303261923
EEYKKIKSP	9	Unmodified	_EEYKKIKSP_					0	0	0		RGS4|p.K113Rfs*15|1|0.38|ENSG00000117152|chr1:163073578-163073578|A/-|frameshift_variant;ENST00000491263.1_1_1:163042508-163043577:+|nuORF;nc|ENSG00000117152|P49798-5|RGS4;nc|ENSG00000117152|P49798-2|RGS4;ENSG00000117152|ENST00000367909|RGS4;nc|ENSG00000117152|P49798-3|RGS4	RGS4|p.K113Rfs*15|1|0.38|ENSG00000117152|chr1:163073578-163073578|A/-|frameshift_variant	RGS4|p.K113Rfs*15|1|0.38|ENSG00000117152|chr1:163073578-163073578|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	561.3139038085938	2	561.313689	1120.61282	0.13856	7.7775E-05	0.26249	0.00014734	0.40105	0.00022511	561.313704027103	17.387	0.72838	17.468	16.857	17.585	0.081356					20	13	2	0	0	0	0.053544	1	5683	5683		72.968	31.012	1	1902600			9033	2561	4966	5004	8757	8757					0.05734281303261923
EEYKKIKSP	9	Unmodified	_EEYKKIKSP_					0	0	0		RGS4|p.K113Rfs*15|1|0.38|ENSG00000117152|chr1:163073578-163073578|A/-|frameshift_variant;ENST00000491263.1_1_1:163042508-163043577:+|nuORF;nc|ENSG00000117152|P49798-5|RGS4;nc|ENSG00000117152|P49798-2|RGS4;ENSG00000117152|ENST00000367909|RGS4;nc|ENSG00000117152|P49798-3|RGS4	RGS4|p.K113Rfs*15|1|0.38|ENSG00000117152|chr1:163073578-163073578|A/-|frameshift_variant	RGS4|p.K113Rfs*15|1|0.38|ENSG00000117152|chr1:163073578-163073578|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	374.5448303222656	3	374.544885	1120.61282	-0.33476	-0.00012538	0.57624	0.00021583	0.24149	9.0447E-05	374.5448718364955	17.374	0.88447	17.456	16.701	17.585	0.081358					21	16	3	0	0	0	0.37539	1	5859	5859		17.443	4.57	1	3257800			9034	2561	4966	5004	8758	8758					0.05734281303261923
EEYKLMYGM	9	Unmodified	_EEYKLMYGM_					0	0	0		ENST00000573989.1_1_17:7834648-7835228:-|nuORF;ENSG00000170043|ENST00000303731|TRAPPC1	ENST00000573989.1_1_17:7834648-7835228:-|nuORF	ENST00000573989.1_1_17:7834648-7835228:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	582.26025390625	2	582.25921	1162.50387	0.60582	0.00035274	-0.00084646	-4.9286E-07	0.60497	0.00035225	582.2592772791056	47.308	0.25869	47.186	47.026	47.285	-0.12175					7	4	2	0	0	0	0.010834	1	18059	18059		111.29	82.205	1	15127000			9035	5111	4967	5005	8759	8759					-0.07088388982924698
EEYKRILG	8	Unmodified	_EEYKRILG_					0	0	0		ENST00000594070.5_1_19:19206777-19217195:+|nuORF;ENSG00000181035|ENST00000318596|SLC25A42	ENST00000594070.5_1_19:19206777-19217195:+|nuORF	ENST00000594070.5_1_19:19206777-19217195:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	504.2799377441406	2	504.279649	1006.54475	0.4402	0.00022198	0.11834	5.9678E-05	0.55854	0.00028166	504.2797517792659	42.338	0.4146	42.269	41.964	42.378	-0.068924					11	7	2	0	0	0	0.73076	1	16050	16050		19.439	1.304	1	7484500			9036	5620	4968	5006	8760	8760					0.0417345644324314
EEYKRMGVP	9	Unmodified	_EEYKRMGVP_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MSMS	HCT116MG_D190212_S2	2	554.7767944335938	2	554.776416	1107.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.81	1	27.468	26.968	27.968	-0.34201								0	0	0	0.32965	1	10118	10118		37.974	0	1				9037	3630	4969	5007	8761	8761					-0.011188047797759282
EEYNRHKPP	9	Unmodified	_EEYNRHKPP_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	HCT116MG_D190212_S1	1	585.28857421875	2	585.288537	1168.56252	0.60743	0.00035552	-0.27142	-0.00015886	0.33601	0.00019666	585.2882931739322	15.353	0.26054	15.353	15.275	15.536	0					6	4	2	0	0	0	0.16306	1	5116	5116		45.7	18.071	1	3975500			9038	1889	4970	5008	8762	8762					-0.01501828301934438
EEYNRHKPP	9	Unmodified	_EEYNRHKPP_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	HCT116MG_D190212_S2	2	585.2886962890625	2	585.288537	1168.56252	0.40956	0.00023971	-0.17522	-0.00010255	0.23434	0.00013715	585.2883477519794	15.632	0.73003	15.305	15.019	15.749	-0.32684					26	13	3	0	0	0	0.020353	1	5208	5208		96.111	64.843	1	17266000			9039	1889	4970	5008	8763	8763					-0.01501828301934438
EEYNRHKPP	9	Unmodified	_EEYNRHKPP_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	HCT116MG_D190212_S2	2	390.5280456542969	3	390.528117	1168.56252	-0.02827	-1.104E-05	0.056169	2.1936E-05	0.027899	1.0895E-05	390.5280523900543	15.614	0.52116	15.287	15.071	15.592	-0.32684					16	9	2	0	0	0	0.14171	1	5211	5211		45.74	30.201	1	5689000			9040	1889	4970	5008	8764	8764					-0.01501828301934438
EEYNRHKPP	9	Unmodified	_EEYNRHKPP_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	390.528117	1168.56252	-0.075834	-2.9615E-05	-0.099981	-3.9045E-05	-0.17581	-6.8661E-05	390.52803693556774	15.353	0.20846	15.353	15.275	15.484	0	0.033381	-9.067E-05	NaN	45.74	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1396000			9041	1889	4970	5008							-0.01501828301934438
EEYQAIQKA	9	Unmodified	_EEYQAIQKA_					0	0	0		nc|ENSG00000002016|P43351-4|RAD52;nc|ENSG00000002016|P43351-3|RAD52;nc|ENSG00000002016|P43351-2|RAD52;ENSG00000002016|ENST00000358495|RAD52	nc|ENSG00000002016|P43351-4|RAD52	nc|ENSG00000002016|P43351-4|RAD52	MULTI-SECPEP	HCT116MG_D190212_S2	2	539.7631225585938	2	540.272021	1078.52949	0.5431	0.00029342	0.87306	0.00047169	1.4162	0.00076511	540.272625814641	25.269	0.26021	24.894	24.764	25.024	-0.37521					8	4	3	0	0	0	0.076938	1	9087	9087		62.573	24.599	1	10902000			9042	788	4971	5009	8765	8765					-0.006634551446268233
EEYQAIQKA	9	Unmodified	_EEYQAIQKA_					0	0	0		nc|ENSG00000002016|P43351-4|RAD52;nc|ENSG00000002016|P43351-3|RAD52;nc|ENSG00000002016|P43351-2|RAD52;ENSG00000002016|ENST00000358495|RAD52	nc|ENSG00000002016|P43351-4|RAD52	nc|ENSG00000002016|P43351-4|RAD52	MULTI-MSMS	HCT116MG_D190212_S3	3	540.2727661132812	2	540.272021	1078.52949	0.55525	0.00029999	-0.20394	-0.00011019	0.35131	0.0001898	540.773077988249	25.075	0.26068	24.969	24.787	25.048	-0.10618					7	4	2	0	0	0	0.030723	1	8944	8944		85.642	49.135	1	5757000			9043	788	4971	5009	8766	8766					-0.006634551446268233
EEYQHYKGS	9	Unmodified	_EEYQHYKGS_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	HCT116MG_D190212_S3	3	570.7495727539062	2	570.751453	1139.48835	0.28267	0.00016133	-1.0561	-0.00060275	-0.7734	-0.00044142	570.7507057311897	17.01	0.88447	17.094	16.704	17.589	0.084467					29	16	3	0	0	0	0.33687	1	5654	5654		26.884	5.137	1	18810000			9044	9530	4972	5010	8767	8767					-0.07581216184098594
EEYQHYKGS	9	Unmodified	_EEYQHYKGS_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	570.751453	1139.48835	0.55202	0.00031507	-0.90196	-0.00051479	-0.34994	-0.00019973	570.7510855608244	17.39	0.15664	17.39	17.307	17.463	0	0.1414	-0.00016114	NaN	26.884	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3655600			9045	9530	4972	5010							-0.07581216184098594
EEYQHYKGS	9	Unmodified	_EEYQHYKGS_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	570.751453	1139.48835	0.18718	0.00010683	-1.339	-0.00076421	-1.1518	-0.00065738	570.7507044303954	17.213	0.82877	17.043	16.5	17.329	-0.17047	-0.20553	-0.00065997	NaN	26.884	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5295700			9046	9530	4972	5010							-0.07581216184098594
EEYQNPHTV	9	Unmodified	_EEYQNPHTV_					0	0	0		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MSMS	HCT116MG_D190212_S1	1	558.7517700195312	2	558.751453	1115.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.495	1	22.495	21.995	22.995	0								0	0	0	0.016928	1	7967	7967		96.285	54.19	1				9047	1182	4973	5011	8768	8768					-0.06477216184111967
EEYQNPHTV	9	Unmodified	_EEYQNPHTV_					0	0	0		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	HCT116MG_D190212_S2	2	558.7515258789062	2	558.751453	1115.48835	0.33172	0.00018535	-0.01474	-8.2363E-06	0.31698	0.00017711	558.7514193755695	22.945	0.31169	22.56	22.362	22.674	-0.3852					9	5	2	0	0	0	0.0080847	2	8153	8142;8153		118.07	65.8	1	16559000			9048	1182	4973	5011	8769;8770	8770					-0.06477216184111967
EEYQQKIIP	9	Unmodified	_EEYQQKIIP_					0	0	0		nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1;nc|ENSG00000142186|Q96KG9-5|SCYL1;SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1	nc|ENSG00000142186|Q96KG9-3|SCYL1	nc|ENSG00000142186|Q96KG9-3|SCYL1	MULTI-MSMS	HCT116MG_D190212_S2	2	574.3036499023438	2	574.303321	1146.59209	0.32404	0.0001861	0.66052	0.00037934	0.98456	0.00056544	574.3036549898547	37.001	0.66967	36.886	36.499	37.168	-0.11478					19	12	3	0	0	0	0.012596	1	13857	13857		106.94	51.437	1	40118000			9049	3747	4974	5012	8771	8771					0.024656909235773128
EEYQQKIIP	9	Unmodified	_EEYQQKIIP_					0	0	0		nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1;nc|ENSG00000142186|Q96KG9-5|SCYL1;SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1	nc|ENSG00000142186|Q96KG9-3|SCYL1	nc|ENSG00000142186|Q96KG9-3|SCYL1	MULTI-MSMS	HCT116MG_D190212_S3	3	574.3031616210938	2	574.303321	1146.59209	0.50338	0.00028909	0.82158	0.00047184	1.325	0.00076093	574.3040127064489	37.2	0.62437	36.899	36.561	37.185	-0.30137					16	11	3	0	0	0	0.012496	1	13784	13784		107.19	55.557	1	9259800			9050	3747	4974	5012	8772	8772					0.024656909235773128
EEYQRIYTT	9	Unmodified	_EEYQRIYTT_					0	0	0		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	601.78857421875	2	601.788035	1201.56152	0.72065	0.00043368	-0.32584	-0.00019609	0.39481	0.00023759	601.7877399505853	29.822	0.20659	29.521	29.392	29.599	-0.30095					8	3	3	0	0	0	0.0041644	1	10950	10950		148.27	84.308	1	29811000			9051	82	4975	5013	8773	8773					-0.031200874614796703
EEYQRIYTT	9	Unmodified	_EEYQRIYTT_					0	0	0		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.I657Nfs*25|1|0.36|ENSG00000124942|chr11:62532447-62532448|-/T|frameshift_variant;AHNAK|p.S1888Qfs*8|1|0.11|ENSG00000124942|chr11:62528755-62528756|-/G|frameshift_variant;AHNAK|p.L2124Ifs*37|1|0.04|ENSG00000124942|chr11:62528048-62528049|-/ATGCCTGATA|frameshift_variant;AHNAK|p.K2311Rfs*11|1|0.33|ENSG00000124942|chr11:62527487-62527487|G/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	601.7879638671875	2	601.788035	1201.56152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.015	1	29.779	29.279	30.279	-0.23655								0	0	0	0.74436	1	10924	10924		16.942	0.79319	1				9052	82	4975	5013	8774	8774					-0.031200874614796703
EEYQSLIRY	9	Unmodified	_EEYQSLIRY_					0	0	0		ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1	ENST00000463735.1_1_1:161123865-161127131:+|nuORF	ENST00000463735.1_1_1:161123865-161127131:+|nuORF	MSMS	HCT116MG_D190212_S1	1	600.798095703125	2	600.798403	1199.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.594	1	43.594	43.094	44.094	0								0	0	0	0.034054	1	16474	16474		78.728	40.754	1				9053	3792	4976	5014	8775	8775					-0.00955497081804424
EEYQSLIRY	9	Unmodified	_EEYQSLIRY_					0	0	0		ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1	ENST00000463735.1_1_1:161123865-161127131:+|nuORF	ENST00000463735.1_1_1:161123865-161127131:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	600.7986450195312	2	600.798403	1199.58225	0.78315	0.00047051	-0.31792	-0.000191	0.46523	0.00027951	600.7981874930064	43.506	0.41202	43.433	43.2	43.612	-0.073376					14	7	3	0	0	0	3.8859E-05	2	16507	16507;16510		209.87	141.79	1	83794000			9054	3792	4976	5014	8776;8777	8776					-0.00955497081804424
EEYQSLIRY	9	Unmodified	_EEYQSLIRY_					0	0	0		ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1	ENST00000463735.1_1_1:161123865-161127131:+|nuORF	ENST00000463735.1_1_1:161123865-161127131:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	600.7987670898438	2	600.798403	1199.58225	0.63566	0.0003819	0.0094174	5.6579E-06	0.64507	0.00038756	600.7983331610131	43.742	0.20879	43.436	43.344	43.553	-0.30616					6	3	2	0	0	0	0.012496	1	16353	16353		107.19	45.83	1	4725800			9055	3792	4976	5014	8778	8778					-0.00955497081804424
EEYQSLIRY	9	Unmodified	_EEYQSLIRY_					0	0	0		ENST00000463735.1_1_1:161123865-161127131:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1	ENST00000463735.1_1_1:161123865-161127131:+|nuORF	ENST00000463735.1_1_1:161123865-161127131:+|nuORF	MSMS	HCT116MG_D190212_S4	4	600.7987060546875	2	600.798403	1199.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.901	1	43.527	43.027	44.027	-0.37395								0	0	0	0.30238	1	16154	16154		39.95	19.496	1				9056	3792	4976	5014	8779	8779					-0.00955497081804424
EEYRVTGY	8	Unmodified	_EEYRVTGY_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.2401123046875	2	508.737814	1015.46108	0.22616	0.00011506	0.29455	0.00014985	0.52071	0.00026491	508.7377665185713	30.787	0.25908	30.52	30.404	30.663	-0.26704					6	4	2	0	0	0	0.10171	1	11355	11355		92.653	46.632	1	18202000			9057	274	4977	5015	8780	8780					-0.046036997244755185
EEYRVTGY	8	Unmodified	_EEYRVTGY_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7381286621094	2	508.737814	1015.46108	0.1198	6.0947E-05	0.05608	2.853E-05	0.17588	8.9477E-05	508.7379862770905	30.943	0.2605	30.682	30.552	30.813	-0.26071					7	4	2	0	0	0	0.1105	1	11319	11319		92.653	54.679	1	4592000			9058	274	4977	5015	8781	8781					-0.046036997244755185
EEYRVVEQQ	9	Unmodified	_EEYRVVEQQ_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	HCT116MG_D190212_S3	3	590.7876586914062	2	590.28566	1178.55677	0.547	0.00032288	0.1365	8.0575E-05	0.6835	0.00040346	590.2852912871621	37.02	0.20834	36.719	36.613	36.821	-0.30113					5	3	2	0	0	0	0.23138	1	13721	13721		37.974	1.847	1	3817500	+		9059	11646	4978	5016	8782	8782					-0.025369716042405344
EEYTDSSS	8	Unmodified	_EEYTDSSS_					0	0	0			REV__SAE1|p.P257S|1|0.08|ENSG00000142230|chr19:47197268-47197268|C/T|missense_variant	REV__SAE1|p.P257S|1|0.08|ENSG00000142230|chr19:47197268-47197268|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	459.1719055175781	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8326	1	7.8491	7.3491	8.3491	0.016533								0	0	0	0.8837	1	2367	2367		0.79363	0	1		+		9060	17490	4979	5017	8783	8783					-0.13172554883033172
EEYYFEQHRA	10	Unmodified	_EEYYFEQHRA_					0	0	0		ENST00000522645.5_1_8:59543991-59572190:-|nuORF;NSMAF|p.R751Dfs*16|1|0.2|ENSG00000035681|chr8:58587662-58587662|T/-|frameshift_variant;ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF	ENST00000522645.5_1_8:59543991-59572190:-|nuORF	ENST00000522645.5_1_8:59543991-59572190:-|nuORF	MSMS	HCT116MG_D190212_S4	4	686.302490234375	2	686.301841	1370.58913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.336	1	33.951	33.451	34.451	-0.38558								0	0	0	0.92272	1	12534	12534		10.824	0	1				9061	982	4980	5018	8784	8784					-0.0813418420123071
EFCLRYHRFYR	11	Unmodified	_EFCLRYHRFYR_					0	0	0			REV__nc|ENSG00000130770|Q9UII2-2|ATP5IF1	REV__nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MSMS	HCT116MG_D190212_S4	4	795.39501953125	2	795.393345	1588.77214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.187	1	54.869	54.369	55.369	-0.31774								0	0	0	0.95954	1	20656	20656		1.3295	0	1		+		9062	17127	4981	5019	8785	8785					0.0013009137956032646
EFDEIELAY	9	Unmodified	_EFDEIELAY_					0	0	0		ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	MULTI-MSMS	HCT116MG_D190212_S2	2	564.7567138671875	2	564.758412	1127.50227	0.58923	0.00033277	-4.2207	-0.0023837	-3.6314	-0.0020509	564.7561736066815	52.492	0.36085	52.305	52.038	52.399	-0.18725					8	6	2	0	0	0	0.41514	1	20182	20182		21.747	2.4897	1	10645000			9063	6669	4982	5020	8786	8786					-0.056379834756626224
EFEDDFDDE	9	Unmodified	_EFEDDFDDE_					0	0	0		LMTK2|p.N82D|1|0.39|ENSG00000164715|chr7:98141409-98141409|A/G|missense_variant	LMTK2|p.N82D|1|0.39|ENSG00000164715|chr7:98141409-98141409|A/G|missense_variant	LMTK2|p.N82D|1|0.39|ENSG00000164715|chr7:98141409-98141409|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	580.6976318359375	2	580.698748	1159.38294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.482	1	42.482	41.982	42.982	0								0	0	0	0.768	1	16024	16024		7.9102	3.5809	1				9064	9300	4983	5021	8787	8787					-0.19037221891039735
EFEFYCMACDY	11	Unmodified	_EFEFYCMACDY_					0	0	0		nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	MULTI-MSMS	HCT116MG_D190212_S2	2	710.7489624023438	2	710.74835	1419.48215	0.85534	0.00060793	-0.41015	-0.00029151	0.44519	0.00031642	710.7481842449117	19.023	0.41721	18.653	18.471	18.888	-0.3695					16	7	3	0	0	0	0.69749	1	6589	6589		22.736	9.6938	1	8781800			9065	6450	4984	5022	8788	8788					-0.21081561793766923
EFFYGHFFRFW	11	Unmodified	_EFFYGHFFRFW_					0	0	0		ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	MSMS	HCT116MG_D190212_S4	4	792.0440063476562	2	791.866954	1581.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.547	1	56.241	55.741	56.741	-0.30626								0	0	0	0.96141	1	21200	21200		0.35063	0	1				9066	5554	4985	5023	8789	8789					-0.04823543411589526
EFFYGMVT	8	Unmodified	_EFFYGMVT_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MSMS	HCT116MG_D190212_S1	1	497.2244873046875	2	497.222954	992.431355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.285	1	34.285	33.785	34.785	0								0	0	0	0.8396	1	12716	12716		19.439	5.9311	1				9067	3381	4986	5024	8790	8790					-0.0651635499416443
EFHEPETWWKF	11	Unmodified	_EFHEPETWWKF_					0	0	0		ENSG00000244754|ENST00000267068|N4BP2L2;nc|ENSG00000244754|Q92802-2|N4BP2L2;nc|ENSG00000244754|Q92802-3|N4BP2L2	ENSG00000244754|ENST00000267068|N4BP2L2	ENSG00000244754|ENST00000267068|N4BP2L2	MSMS	HCT116MG_D190212_S4	4	768.35400390625	2	768.351334	1534.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.176	1	52.841	52.341	53.341	-0.33473								0	0	0	0.95113	1	19846	19846		5.7319	2.4505	1				9068	6569	4987	5025	8791	8791					-0.057841612363517925
EFHFKPNEYFK	11	Unmodified	_EFHFKPNEYFK_					0	0	0		nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2;NAP1L2|p.Y327Vfs*6|1|0.04|ENSG00000186462|chrX:73213514-73213515|-/C|frameshift_variant	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	MSMS	HCT116MG_D190212_S4	4	743.3616943359375	2	743.361702	1484.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.507	1	52.166	51.666	52.666	-0.34023								0	0	0	0.95581	1	19576	19576		3.2813	0	1				9069	5885	4988	5026	8792	8792					-0.014115708567032925
EFHRKYLLRV	10	Unmodified	_EFHRKYLLRV_					0	0	0		MER65-int_dup829|chr19:41730434-41731149:+|4.724704930580082|0.0139534672083954|8.4|482.0|14|2|sense	MER65-int_dup829|chr19:41730434-41731149:+|4.724704930580082|0.0139534672083954|8.4|482.0|14|2|sense	MER65-int_dup829|chr19:41730434-41731149:+|4.724704930580082|0.0139534672083954|8.4|482.0|14|2|sense	MSMS	HCT116MG_D190212_S3	3	680.896240234375	2	680.896046	1359.77754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.154	1	41.851	41.351	42.351	-0.3034								0	0	0	0.96263	1	15695	15695		3.9444	0	1				9070	9327	4989	5027	8793	8793					0.11204138233688354
EFIWSEVAGS	10	Unmodified	_EFIWSEVAGS_					0	0	0		ENST00000544008.1_11:69061945-69156410:+|nuORF;ENST00000441339.2_11:69061897-69062793:+|nuORF	ENST00000544008.1_11:69061945-69156410:+|nuORF	ENST00000544008.1_11:69061945-69156410:+|nuORF	MSMS	HCT116MG_D190212_S3	3	562.7645263671875	2	562.766571	1123.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.603	1	26.454	25.954	26.954	-0.14924								0	0	0	0.87399	1	9551	9551		19.257	1.8143	1				9071	7926	4990	5028	8794	8794					-0.03822857518912315
EFKKLKIRRL	10	Unmodified	_EFKKLKIRRL_					0	0	0		MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;nc|ENSG00000133454|Q8IUG5-2|MYO18B	MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	444.295654296875	3	444.294235	1329.86087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.286	1	60.286	59.786	60.786	0								0	0	0	0.97054	1	23236	23236		0.13989	0.04505	1				9072	3242	4991	5029	8795	8795					0.20913874681514244
EFKKVIALYFL	11	Unmodified	_EFKKVIALYFL_					0	0	0			REV__tr|U7T3F0|U7T3F0_FUSNUOxaloacetatedecarboxylase,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00407PE=4SV=1	REV__tr|U7T3F0|U7T3F0_FUSNUOxaloacetatedecarboxylase,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00407PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	685.9089965820312	2	685.907756	1369.80096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.709	1	51.525	51.025	52.025	-0.18369								0	0	0	0.95581	1	19846	19846		3.2813	0.78282	1		+		9073	17945	4992	5030	8796	8796					0.13085139227655418
EFLFHISRLFY	11	Unmodified	_EFLFHISRLFY_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MSMS	HCT116MG_D190212_S2	2	736.3873901367188	2	736.390262	1470.76597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.427	1	49.273	48.773	49.773	-0.15405								0	0	0	0.91433	1	18916	18916		18.146	5.9057	1				9074	1181	4993	5031	8797	8797					0.04941896419677505
EFLIDLRD	8	Unmodified	_EFLIDLRD_					0	0	0			REV__COL28A1|p.I223M|1|0.12|ENSG00000215018|chr7:7531360-7531360|A/C|missense_variant	REV__COL28A1|p.I223M|1|0.12|ENSG00000215018|chr7:7531360-7531360|A/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	1020.57275390625	1	1020.53604	1019.52876	0.82569	0.00084265	0.43929	0.00044831	1.265	0.001291	1020.5365464688203	57.007	0.15535	57.007	56.893	57.049	0					4	2	2	0	0	0	0.2707	1	21895	21895		32.305	6.9062	1	9551200	+		9075	10234	4994	5032	8798	8798					0.019777502063334396
EFLKSKTAK	9	Unmodified	_EFLKSKTAK_					0	0	0			REV__ENSG00000082014|ENST00000262188|SMARCD3	REV__ENSG00000082014|ENST00000262188|SMARCD3	MSMS	HCT116MG_D190212_S3	3	351.2108459472656	3	351.209725	1050.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.041	1	61.81	61.31	62.31	-0.23129								0	0	0	0.76818	1	23692	23692		4.5289	1.7937	1		+		9076	10884	4995	5033	8799	8799					0.08406602511422534
EFMENLTLII	10	Unmodified	_EFMENLTLII_					0	0	0			REV__tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	REV__tr|U7SIZ9|U7SIZ9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02293PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	408.21710205078125	3	408.21778	1221.63151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.273	1	46.903	46.403	47.403	-0.37038								0	0	0	0.95381	1	17481	17481		3.8763	0.28927	1		+		9077	17685	4996	5034	8800	8800					0.02956074882786197
EFPEFPTNL	9	Unmodified	_EFPEFPTNL_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	HCT116MG_D190212_S1	1	365.17803955078125	3	365.178202	1092.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.662	1	24.662	24.162	25.162	0								0	0	0	0.76902	1	8838	8838		2.4985	1.1688	1				9078	5848	4997	5035	8801	8801					-0.029779560305769337
EFPVPKWWHR	10	Unmodified	_EFPVPKWWHR_					0	0	0		nc|ENSG00000186409|Q5VVM6-2|CCDC30;nc|ENSG00000186409|Q5VVM6|CCDC30;ENSG00000186409|ENST00000657597|CCDC30	nc|ENSG00000186409|Q5VVM6-2|CCDC30	nc|ENSG00000186409|Q5VVM6-2|CCDC30	MULTI-MSMS	HCT116MG_D190212_S2	2	691.3629760742188	2	691.361839	1380.70913	0.58824	0.00040669	1.4651	0.0010129	2.0533	0.0014196	691.3626079091014	17.541	0.36581	17.191	16.873	17.239	-0.34933					10	6	2	0	0	0	0.87037	1	5994	5994		6.2058	0.9089	1	3800600			9079	5881	4998	5036	8802	8802					0.033998936538182534
EFPVPKWWHR	10	Unmodified	_EFPVPKWWHR_					0	0	0		nc|ENSG00000186409|Q5VVM6-2|CCDC30;nc|ENSG00000186409|Q5VVM6|CCDC30;ENSG00000186409|ENST00000657597|CCDC30	nc|ENSG00000186409|Q5VVM6-2|CCDC30	nc|ENSG00000186409|Q5VVM6-2|CCDC30	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	691.361839	1380.70913	0.58824	0.00040669	1.4651	0.0010129	2.0533	0.0014196	691.3626079091014	17.541	0.36581	17.191	16.873	17.239	-0.34933	0	0	NaN	6.2058	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3800600			9080	5881	4998	5036							0.033998936538182534
EFQKEFYKL	9	Unmodified	_EFQKEFYKL_					0	0	0			REV__ENST00000521973.5_1_8:125516164-125531109:-|nuORF	REV__ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	616.0361938476562	2	616.321514	1230.62847	0.46631	0.0002874	1.3036	0.00080343	1.7699	0.0010908	616.322161000835	42.942	0.25085	42.638	42.456	42.706	-0.30472					7	4	2	0	0	0	0.33687	1	16009	16009		26.884	12.045	1	9326400	+		9081	12523	4999	5037	8803	8803					0.02238567820290882
EFSICMDP	8	Unmodified	_EFSICMDP_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MSMS	HCT116MG_D190212_S1	1	471.19091796875	2	471.190796	940.36704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.395	1	26.395	25.895	26.895	0								0	0	0	0.8837	1	9535	9535		9.3474	1.4373	1		+		9082	12810	5000	5038	8804	8804					-0.10552878142618738
EFSRSRRKRRK	11	Unmodified	_EFSRSRRKRRK_					0	0	0			REV__ENSG00000196169|ENST00000389916|KIF19	REV__ENSG00000196169|ENST00000389916|KIF19	MSMS	HCT116MG_D190212_S2	2	753.450927734375	2	753.447831	1504.88111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.997	1	55.812	55.312	56.312	-0.18565								0	0	0	0.95113	1	21598	21598		5.7319	2.9967	1		+		9083	14007	5001	5039	8805	8805					0.14886438394046309
EFSSNCNCHNV	11	Unmodified	_EFSSNCNCHNV_					0	0	0			REV__ENST00000579650.5_1_17:27031489-27037901:-|nuORF	REV__ENST00000579650.5_1_17:27031489-27037901:-|nuORF	MSMS	HCT116MG_D190212_S3	3	418.4953308105469	3	418.493978	1252.46011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.933	1	14.008	13.508	14.508	0.074899								0	0	0	0.96149	1	4452	4452		0.08335	0	1		+		9084	16618	5002	5040	8806	8806					-0.15602605427329763
EFVGYSLTVQE	11	Unmodified	_EFVGYSLTVQE_					0	0	0			REV__nc|ENSG00000100060|O00587-2|MFNG	REV__nc|ENSG00000100060|O00587-2|MFNG	MULTI-MSMS	HCT116MG_D190212_S3	3	424.5436706542969	3	424.543321	1270.60813	0.076976	3.268E-05	0.54609	0.00023184	0.62306	0.00026452	424.54353010093905	19.005	0.31184	19.075	18.927	19.239	0.069159					7	5	2	0	0	0	0.71697	1	6513	6513		15.538	7.252	1	3214100	+		9085	11063	5003	5041	8807	8807					-0.016346476301805524
EFWFQKRML	9	Unmodified	_EFWFQKRML_					0	0	0		ENST00000328032.8_1_2:163695097-163695211:-|nuORF	ENST00000328032.8_1_2:163695097-163695211:-|nuORF	ENST00000328032.8_1_2:163695097-163695211:-|nuORF	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.890109	1283.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.562	1	3.2975	2.7975	3.7975	-0.26456								0	0	0	0.77018	1	1086	1086		0.26902	0	1				9086	7149	5004	5042	8808	8808					0.018020402792444656
EFWKKRRTVRR	11	Unmodified	_EFWKKRRTVRR_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MSMS	HCT116MG_D190212_S4	4	781.4627075195312	2	781.46295	1560.91135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.338	1	48.975	48.475	49.475	-0.36306								0	0	0	0.96208	1	18297	18297		0	0	1				9087	9469	5005	5043	8809	8809					0.15332797059227232
EGAAPEGL	8	Unmodified	_EGAAPEGL_					0	0	0			REV__ENSG00000178718|ENST00000322177|RPP25	REV__ENSG00000178718|ENST00000322177|RPP25	MULTI-MSMS	HCT116MG_D190212_S3	3	743.3574829101562	1	743.35701	742.349734	0.61872	0.00045993	-0.086886	-6.4587E-05	0.53183	0.00039534	743.3567000951176	29.73	0.63186	29.493	29.083	29.715	-0.23655					17	11	2	0	0	0	0.43493	1	10774	10774		46.921	6.4723	1	4215400	+		9088	13611	5006	5044	8810	8810					-0.03174714361762199
EGAAPEGL	8	Unmodified	_EGAAPEGL_					0	0	0			REV__ENSG00000178718|ENST00000322177|RPP25	REV__ENSG00000178718|ENST00000322177|RPP25	MULTI-MSMS	HCT116MG_D190212_S4	4	743.3585815429688	1	743.35701	742.349734	0.8114	0.00060316	0.04836	3.5949E-05	0.85976	0.00063911	743.356919815272	29.772	0.72793	29.423	28.981	29.709	-0.34921					21	13	2	0	0	0	0.43493	1	10738	10738		46.921	6.4723	1	6083400	+		9089	13611	5006	5044	8811	8811					-0.03174714361762199
EGAAPEGL	8	Unmodified	_EGAAPEGL_					0	0	0			REV__ENSG00000178718|ENST00000322177|RPP25	REV__ENSG00000178718|ENST00000322177|RPP25	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	743.35701	742.349734	0.61872	0.00045993	-0.086886	-6.4587E-05	0.53183	0.00039534	743.3567000951176	29.73	0.63186	29.493	29.083	29.715	-0.23655	0.035228	-7.0408E-05	NaN	46.921	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4215400	+		9090	13611	5006	5044							-0.03174714361762199
EGAAPEGL	8	Unmodified	_EGAAPEGL_					0	0	0			REV__ENSG00000178718|ENST00000322177|RPP25	REV__ENSG00000178718|ENST00000322177|RPP25	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	743.35701	742.349734	0.8114	0.00060316	0.04836	3.5949E-05	0.85976	0.00063911	743.356919815272	29.772	0.72793	29.423	28.981	29.709	-0.34921	-0.035228	3.0128E-05	NaN	46.921	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6083400	+		9091	13611	5006	5044							-0.03174714361762199
EGAPAERYGPQ	11	Unmodified	_EGAPAERYGPQ_					0	0	0		LRRN4CL|p.F108Lfs*50|1|0.21|ENSG00000177363|chr11:62688187-62688188|-/G|frameshift_variant	LRRN4CL|p.F108Lfs*50|1|0.21|ENSG00000177363|chr11:62688187-62688188|-/G|frameshift_variant	LRRN4CL|p.F108Lfs*50|1|0.21|ENSG00000177363|chr11:62688187-62688188|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	588.2800903320312	2	587.778002	1173.54145	0.50125	0.00029462	-0.18269	-0.00010738	0.31856	0.00018724	587.7779825635547	26.213	1.0921	25.92	25.512	26.604	-0.29371					39	20	3	0	0	0	0.72419	1	9494	9494		12.873	0.63195	1	6948900			9092	9310	5007	5045	8812	8812					-0.038378384014322364
EGASWDAGP	9	Unmodified	_EGASWDAGP_					0	0	0		NACAD|p.I1557Rfs*6|1|0.03|ENSG00000136274|chr7:45080644-45080645|-/CCATC|frameshift_variant;ENSG00000136274|ENST00000490531|NACAD;NACAD|p.A214Pfs*92|1|0.36|ENSG00000136274|chr7:45085541-45085541|G/-|frameshift_variant;NACAD|p.V1328Cfs*176|1|0.17|ENSG00000136274|chr7:45082199-45082199|T/-|frameshift_variant	NACAD|p.I1557Rfs*6|1|0.03|ENSG00000136274|chr7:45080644-45080645|-/CCATC|frameshift_variant	NACAD|p.I1557Rfs*6|1|0.03|ENSG00000136274|chr7:45080644-45080645|-/CCATC|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	445.1866760253906	2	445.187957	888.361361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.189	1	18.014	17.514	18.514	-0.17501								0	0	0	0.76694	1	6088	6088		11.64	3.047	1				9093	3409	5008	5046	8813	8813					-0.08728517338420261
EGAVIKFL	8	Unmodified	_EGAVIKFL_					0	0	0			REV__ENSG00000137225|ENST00000398776|CAPN11	REV__ENSG00000137225|ENST00000398776|CAPN11	MSMS	HCT116MG_D190212_S4	4	438.7627868652344	2	438.763104	875.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.163	1	39.783	39.283	40.283	-0.37936								0	0	0	0.8837	1	14725	14725		9.3474	0	1		+		9094	12167	5009	5047	8814	8814					0.06891874391192232
EGCFCMGCSWC	11	Unmodified	_EGCFCMGCSWC_					0	0	0		ENST00000543374.1_1_11:73555872-73556061:+|nuORF	ENST00000543374.1_1_11:73555872-73556061:+|nuORF	ENST00000543374.1_1_11:73555872-73556061:+|nuORF	MSMS	HCT116MG_D190212_S3	3	613.3306884765625	2	613.183808	1224.35306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.42	1	22.406	21.906	22.906	-0.014542								0	0	0	0.96149	1	7865	7865		0.30703	0.30703	1				9095	8702	5010	5048	8815	8815					-0.25013938229199084
EGCRFLHGYH	10	Unmodified	_EGCRFLHGYH_					0	0	0		OSM|p.E214Rfs*15|1|0.25|ENSG00000099985|chr22:30264002-30264002|C/-|frameshift_variant;ENSG00000099985|ENST00000215781|OSM	OSM|p.E214Rfs*15|1|0.25|ENSG00000099985|chr22:30264002-30264002|C/-|frameshift_variant	OSM|p.E214Rfs*15|1|0.25|ENSG00000099985|chr22:30264002-30264002|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	406.85528564453125	3	406.853947	1217.54001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.12	1	10.12	9.6204	10.62	0								0	0	0	0.96183	1	3091	3091		2.086	0	1				9096	1650	5011	5049	8816	8816					-0.0600575097116689
EGDEKRWRSK	10	Unmodified	_EGDEKRWRSK_					0	0	0			REV__SPRED2|p.R299W|1|0.24|ENSG00000198369|chr2:65313863-65313863|G/A|missense_variant	REV__SPRED2|p.R299W|1|0.24|ENSG00000198369|chr2:65313863-65313863|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	430.8879699707031	3	430.889825	1289.64765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.695	1	64.583	64.083	65.083	-0.11256								0	0	0	0.97054	1	25014	25014		0.13989	0.056541	1		+		9097	17588	5012	5050	8817	8817					0.014409171638817497
EGDIVAVF	8	Unmodified	_EGDIVAVF_					0	0	0			REV__ZBED9|p.S934Qfs*17|1|0.4|ENSG00000232040|chr6:28573089-28573089|A/-|frameshift_variant	REV__ZBED9|p.S934Qfs*17|1|0.4|ENSG00000232040|chr6:28573089-28573089|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	425.2216491699219	2	425.221268	848.427984	0.44325	0.00018848	0.24025	0.00010216	0.68349	0.00029064	425.221429365812	48.705	0.72977	48.389	48.14	48.87	-0.31596					15	13	2	0	0	0	0.86564	1	18373	18373		2.5775	0	1	3955600	+		9098	14323	5013	5051	8818	8818					-0.002292817765237487
EGDRGGFNLY	10	Unmodified	_EGDRGGFNLY_					0	0	0		nc|ENSG00000148362|Q9BUH6-2|PAXX;ENSG00000148362|ENST00000371620|PAXX	nc|ENSG00000148362|Q9BUH6-2|PAXX	nc|ENSG00000148362|Q9BUH6-2|PAXX	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2599487304688	2	564.259445	1126.50434	0.53209	0.00030024	-0.37218	-0.00021001	0.15991	9.0232E-05	564.2591290099546	42.446	0.26041	42.376	42.221	42.481	-0.069984					9	4	3	0	0	0	0.17574	1	16088	16088		61.602	13.853	1	26169000			9099	4021	5014	5052	8819	8819					-0.053855099471547874
EGDRGGFNLY	10	Unmodified	_EGDRGGFNLY_					0	0	0		nc|ENSG00000148362|Q9BUH6-2|PAXX;ENSG00000148362|ENST00000371620|PAXX	nc|ENSG00000148362|Q9BUH6-2|PAXX	nc|ENSG00000148362|Q9BUH6-2|PAXX	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2590942382812	2	564.259445	1126.50434	0.48269	0.00027236	-0.29689	-0.00016752	0.1858	0.00010484	564.2591246293962	42.734	0.26009	42.431	42.301	42.561	-0.30352					11	4	3	0	0	0	0.37752	1	15942	15942		43.772	7.6454	1	6839900			9100	4021	5014	5052	8820	8820					-0.053855099471547874
EGGDEENDPDY	11	Unmodified	_EGGDEENDPDY_					0	0	0		ENST00000554165.1_1_14:91850766-91884010:-|nuORF	ENST00000554165.1_1_14:91850766-91884010:-|nuORF	ENST00000554165.1_1_14:91850766-91884010:-|nuORF	MSMS	HCT116MG_D190212_S1	1	620.215087890625	2	620.217837	1238.42112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.305	1	18.305	17.805	18.805	0								0	0	0	0.9465	1	6284	6284		8.1555	0.24537	1				9101	8776	5015	5053	8821	8821					-0.1885533597635458
EGGEPLVL	8	Unmodified	_EGGEPLVL_					0	0	0			REV__ENST00000563974.1_2_16:1470295-1470397:-|nuORF	REV__ENST00000563974.1_2_16:1470295-1470397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	813.43505859375	1	813.435261	812.427984	1.1615	0.0009448	-1.0554	-0.00085854	0.10604	8.6256E-05	813.4341333864407	47.622	0.31069	47.489	47.325	47.636	-0.13281					8	5	2	0	0	0	0.36164	1	18169	18169		53.576	19.388	1	13296000	+		9102	16519	5016	5054	8822	8822					0.014267182234789288
EGGGGRPQP	9	Unmodified	_EGGGGRPQP_					0	0	0			REV__ENST00000335866.7_1_7:50823703-50861020:-|nuORF	REV__ENST00000335866.7_1_7:50823703-50861020:-|nuORF	MSMS	HCT116MG_D190212_S2	2	427.7093811035156	2	427.709391	853.404229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.403	1	15.077	14.577	15.577	-0.32684								0	0	0	0.1323	1	5115	5115		52.268	3.9225	1		+		9103	14949	5017	5055	8823	8823					-0.028337024903407837
EGGIGIGAYSP	11	Unmodified	_EGGIGIGAYSP_					0	0	0			REV__tr|U7T2M6|U7T2M6_FUSNUPropionaldehydedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00504PE=4SV=1	REV__tr|U7T2M6|U7T2M6_FUSNUPropionaldehydedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00504PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	510.7540588378906	2	510.753464	1019.49238	0.2241	0.00011446	-1.3094	-0.00066877	-1.0853	-0.00055432	510.75362571565125	21.025	0.25934	20.815	20.656	20.915	-0.20959					6	4	2	0	0	0	0.60935	1	7229	7229		34.402	2.0962	1	1736900	+		9104	17927	5018	5056	8824	8824					-0.016591266903787982
EGGKLLSQAI	10	Unmodified	_EGGKLLSQAI_					0	0	0		ENST00000603994.1_1_6:146056926-146057010:+|nuORF	ENST00000603994.1_1_6:146056926-146057010:+|nuORF	ENST00000603994.1_1_6:146056926-146057010:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	509.4381408691406	2	508.292756	1014.57096	0.34348	0.00017459	0.057569	2.9262E-05	0.40105	0.00020385	508.2926764904682	26.43	0.36456	26.281	26.098	26.463	-0.14924					17	6	3	0	0	0	0.6277	1	9431	9431		26.268	0.86883	1	59965000			9105	9105	5019	5057	8825	8825					0.06425725614712974
EGGLGHTEEGP	11	Unmodified	_EGGLGHTEEGP_					0	0	0			REV__ENSG00000178021|ENST00000317802|TSPYL6	REV__ENSG00000178021|ENST00000317802|TSPYL6	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7404174804688	2	541.741085	1081.46762	0.26784	0.0001451	-0.80026	-0.00043353	-0.53242	-0.00028843	541.7403956425487	17.004	0.67632	17.089	16.912	17.589	0.084467					15	12	2	0	0	0	0.54229	1	5746	5746		41.84	12.758	1	2070000	+		9106	13590	5020	5058	8826	8826					-0.06985806563761798
EGGLGHTEEGP	11	Unmodified	_EGGLGHTEEGP_					0	0	0			REV__ENSG00000178021|ENST00000317802|TSPYL6	REV__ENSG00000178021|ENST00000317802|TSPYL6	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7407836914062	2	541.741085	1081.46762	0.22234	0.00012045	-0.75509	-0.00040907	-0.53276	-0.00028862	541.7404107721995	17.825	0.46832	17.906	17.638	18.106	0.081358					10	8	2	0	0	0	0.55933	1	6032	6032		39.95	10.868	1	2165100	+		9107	13590	5020	5058	8827	8827					-0.06985806563761798
EGGLGHTEEGP	11	Unmodified	_EGGLGHTEEGP_					0	0	0			REV__ENSG00000178021|ENST00000317802|TSPYL6	REV__ENSG00000178021|ENST00000317802|TSPYL6	MULTI-MSMS	HCT116MG_D190212_S4	4	541.7413330078125	2	541.741085	1081.46762	0.035938	1.9469E-05	-0.25732	-0.0001394	-0.22138	-0.00011993	541.7408924117908	17.104	0.36118	16.934	16.708	17.069	-0.1699					13	6	3	0	0	0	0.67041	1	5701	5701		27.629	1.3607	1	1666500	+		9108	13590	5020	5058	8828	8828					-0.06985806563761798
EGGLREEGDP	10	Unmodified	_EGGLREEGDP_					0	0	0			REV__ENST00000550033.5_1_12:53701834-53703447:-|nuORF	REV__ENST00000550033.5_1_12:53701834-53703447:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7403564453125	2	529.741085	1057.46762	0.43324	0.00022951	-0.90147	-0.00047754	-0.46822	-0.00024804	529.7402721784609	17.577	0.47001	17.225	17.08	17.55	-0.35133					14	8	3	0	0	0	0.78097	1	6018	6018		13.615	0.5724	1	5537500	+		9109	11021	5021	5059	8829	8829					-0.05881806563752434
EGGLRPPP	8	Unmodified	_EGGLRPPP_					0	0	0		ENSG00000178015|ENST00000380007|GPR150	ENSG00000178015|ENST00000380007|GPR150	ENSG00000178015|ENST00000380007|GPR150	MULTI-MSMS	HCT116MG_D190212_S2	2	411.7271423339844	2	411.727052	821.439552	-0.16141	-6.6458E-05	0.29116	0.00011988	0.12975	5.342E-05	411.7271477945478	23.087	0.67639	22.702	22.206	22.882	-0.3852					16	12	2	0	0	0	0.71077	1	8266	8266		21.747	5.8995	1	4785400			9110	5482	5022	5060	8830	8830					0.021689600374770635
EGGQCGANGCV	11	Unmodified	_EGGQCGANGCV_					0	0	0			REV__ENST00000572067.1_1_16:67918638-67918992:+|nuORF	REV__ENST00000572067.1_1_16:67918638-67918992:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	498.2435607910156	2	497.689484	993.364414	0.26658	0.00013268	0.23625	0.00011758	0.50284	0.00025026	497.68949529392205	15.789	0.3655	15.454	15.324	15.689	-0.33451					9	6	2	0	0	0	0.36308	1	5293	5293		7.609	7.609	1	2472100	+		9111	16579	5023	5061	8831	8831					-0.13253333547572765
EGHEAYAQ	8	Unmodified	_EGHEAYAQ_					0	0	0		nc|ENSG00000101280|Q9Y264-2|ANGPT4;ENSG00000101280|ENST00000381922|ANGPT4	nc|ENSG00000101280|Q9Y264-2|ANGPT4	nc|ENSG00000101280|Q9Y264-2|ANGPT4	MSMS	HCT116MG_D190212_S4	4	452.69281005859375	2	452.693407	903.37226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.193	1	17.022	16.522	17.522	-0.17047								0	0	0	0.79325	1	5685	5685		23.148	5.0134	1				9112	1771	5024	5062	8832	8832					-0.08329114964146811
EGHGSCSTNTC	11	Unmodified	_EGHGSCSTNTC_					0	0	0			REV__SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant	REV__SELE|p.T415Qfs*14|1|0.31|ENSG00000007908|chr1:169728095-169728095|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	548.1951904296875	2	548.19513	1094.37571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.097	1	51.787	51.287	52.287	-0.30927								0	0	0	0.95686	1	19686	19686		2.7352	0.15772	1		+		9113	10497	5025	5063	8833	8833					-0.16770556244091495
EGKLERADAT	10	Unmodified	_EGKLERADAT_					0	0	0			REV__nc|ENSG00000169756|P48059|LIMS1	REV__nc|ENSG00000169756|P48059|LIMS1	MSMS	HCT116MG_D190212_S1	1	545.2799072265625	2	545.280377	1088.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.23	1	27.23	26.73	27.73	0								0	0	0	0.79191	1	9872	9872		29.841	2.6173	1		+		9114	13262	5026	5064	8834	8834					0.005470457413366603
EGKRGVPSL	9	Unmodified	_EGKRGVPSL_					0	0	0			REV__ENST00000582390.5_1_17:56588609-56588789:-|nuORF	REV__ENST00000582390.5_1_17:56588609-56588789:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	471.77203369140625	2	471.771991	941.529429	0.2729	0.00012875	1.3392	0.00063178	1.6121	0.00076053	471.7720779430615	26.475	0.31222	26.475	26.397	26.709	0					8	5	2	0	0	0	0.30117	1	9608	9608		30.637	6.616	1	2603000	+		9115	16630	5027	5065	8835	8835					0.05632589646052111
EGKRGVPSL	9	Unmodified	_EGKRGVPSL_					0	0	0			REV__ENST00000582390.5_1_17:56588609-56588789:-|nuORF	REV__ENST00000582390.5_1_17:56588609-56588789:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	471.771991	941.529429	0.15877	7.4902E-05	0.48296	0.00022785	0.64173	0.00030275	471.7720127373561	26.638	0.20767	26.276	26.128	26.335	-0.36164	-0.099387	-0.00026976	NaN	30.637	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4409400	+		9116	16630	5027	5065							0.05632589646052111
EGLARGSGSGA	11	Unmodified	_EGLARGSGSGA_					0	0	0			REV__ENST00000600434.5_2_19:17403449-17409140:+|nuORF	REV__ENST00000600434.5_2_19:17403449-17409140:+|nuORF	MSMS	HCT116MG_D190212_S4	4	481.2401123046875	2	481.238513	960.462472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.812	1	14.651	14.151	15.151	-0.16089								0	0	0	0.95113	1	4724	4724		5.7319	0.50118	1		+		9117	16746	5028	5066	8836	8836					-0.01934065635703064
EGLEGLIGA	9	Unmodified	_EGLEGLIGA_					0	0	0		VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant;VRTN|p.A151Pfs*224|1|0.42|ENSG00000133980|chr14:74357228-74357228|C/-|frameshift_variant;ENSG00000133980|ENST00000256362|VRTN	VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	858.4567260742188	1	858.456724	857.449448	0.59656	0.00051212	0.14477	0.00012428	0.74133	0.0006364	858.4567500565273	47.435	0.29847	47.119	46.957	47.256	-0.31525					12	6	2	0	0	0	0.031005	1	17806	17806		85.357	3.4927	1	41852000			9118	3257	5029	5067	8837	8837					0.015021032521872257
EGLEGLIGA	9	Unmodified	_EGLEGLIGA_					0	0	0		VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant;VRTN|p.A151Pfs*224|1|0.42|ENSG00000133980|chr14:74357228-74357228|C/-|frameshift_variant;ENSG00000133980|ENST00000256362|VRTN	VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	858.456724	857.449448	0.91354	0.00078423	-0.17534	-0.00015052	0.7382	0.00063371	858.4563606274874	47.213	0.46469	47.091	46.871	47.336	-0.12175	-0.020458	-0.00014335	NaN	85.357	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72030000			9119	3257	5029	5067							0.015021032521872257
EGLEGLIGA	9	Unmodified	_EGLEGLIGA_					0	0	0		VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant;VRTN|p.A151Pfs*224|1|0.42|ENSG00000133980|chr14:74357228-74357228|C/-|frameshift_variant;ENSG00000133980|ENST00000256362|VRTN	VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	858.456724	857.449448	0.84191	0.00072274	-0.091547	-7.8589E-05	0.75036	0.00064415	858.4563338567699	47.482	0.31149	47.112	46.944	47.255	-0.37038	0.00032127	-7.142E-05	NaN	85.357	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23175000			9120	3257	5029	5067							0.015021032521872257
EGLKFVEGV	9	Unmodified	_EGLKFVEGV_					0	0	0		nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3;NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant	nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	MULTI-MSMS	HCT116MG_D190212_S1	1	489.2691955566406	2	489.26875	976.522947	0.271	0.00013259	-0.11288	-5.523E-05	0.15812	7.7364E-05	489.26900026256294	44.957	0.25816	44.957	44.829	45.087	0					9	4	3	0	0	0	0.1935	1	17049	17049		41.956	1.7163	1	17872000			9121	6059	5030	5068	8838	8838					0.03374651694673503
EGLKFVEGV	9	Unmodified	_EGLKFVEGV_					0	0	0		nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3;NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant	nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	MULTI-MSMS	HCT116MG_D190212_S3	3	489.2687683105469	2	489.26875	976.522947	0.18377	8.9915E-05	0.071484	3.4975E-05	0.25526	0.00012489	489.2686463747831	45.224	0.41722	44.915	44.68	45.098	-0.30927					15	7	3	0	0	0	0.020353	1	16930	16930		96.111	3.4576	1	24281000			9122	6059	5030	5068	8839	8839					0.03374651694673503
EGLPHCLEAP	10	Unmodified	_EGLPHCLEAP_					0	0	0		ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	MULTI-MSMS	HCT116MG_D190212_S1	1	533.2553100585938	2	533.255317	1064.49608	0.56431	0.00030092	-0.27162	-0.00014484	0.29269	0.00015608	533.2550486183802	37.629	0.46869	37.629	37.395	37.863	0					15	8	2	0	0	0	0.64004	1	14094	14094		25.399	0	1	7634400			9123	1721	5031	5069	8840	8840					-0.03358780188182209
EGLPHCLEAP	10	Unmodified	_EGLPHCLEAP_					0	0	0		ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	MULTI-MSMS	HCT116MG_D190212_S2	2	533.2551879882812	2	533.255317	1064.49608	0.24281	0.00012948	-0.12148	-6.4782E-05	0.12132	6.4696E-05	533.2550295416203	37.753	0.51134	37.649	37.335	37.847	-0.10318					14	9	2	0	0	0	0.65652	1	14181	14181		24.021	1.2843	1	26567000			9124	1721	5031	5069	8841	8841					-0.03358780188182209
EGLPHCLEAP	10	Unmodified	_EGLPHCLEAP_					0	0	0		ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	533.255317	1064.49608	0.56431	0.00030092	-0.27162	-0.00014484	0.29269	0.00015608	533.2550486183802	37.629	0.46869	37.629	37.395	37.863	0	-0.010346	-4.641E-05	NaN	25.399	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7634400			9125	1721	5031	5069							-0.03358780188182209
EGLPHCLEAP	10	Unmodified	_EGLPHCLEAP_					0	0	0		ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	533.255317	1064.49608	0.24281	0.00012948	-0.12148	-6.4782E-05	0.12132	6.4696E-05	533.2550295416203	37.753	0.51134	37.649	37.335	37.847	-0.10318	0.010346	0.00011371	NaN	25.399	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26567000			9126	1721	5031	5069							-0.03358780188182209
EGLTLLVPDIQ	11	Unmodified	_EGLTLLVPDIQ_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000470250.1_1_2:32800383-32819219:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MSMS	HCT116MG_D190212_S2	2	599.3409423828125	2	599.339904	1196.66525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.148	1	47.026	46.526	47.526	-0.12175								0	0	0	0.90489	1	17978	17978		19.362	2.249	1				9127	2485	5032	5070	8842	8842					0.0747881964618955
EGMLQDPR	8	Unmodified	_EGMLQDPR_					0	0	0		ENST00000408931.3_1_7:35293551-35293650:-|nuORF	ENST00000408931.3_1_7:35293551-35293650:-|nuORF	ENST00000408931.3_1_7:35293551-35293650:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	473.226318359375	2	473.226559	944.438566	0.35293	0.00016702	-0.23589	-0.00011163	0.11704	5.5386E-05	473.2263084218115	21.946	0.67479	21.725	21.319	21.994	-0.22127					24	12	3	0	0	0	0.71077	1	7583	7583		21.747	0	1	6870900			9128	7723	5033	5071	8843	8843					-0.0358762239374073
EGPEGLKLI	9	Unmodified	_EGPEGLKLI_					0	0	0		ENSG00000152642|ENST00000282541|GPD1L	ENSG00000152642|ENST00000282541|GPD1L	ENSG00000152642|ENST00000282541|GPD1L	MULTI-MSMS	HCT116MG_D190212_S1	1	478.2764892578125	2	478.276575	954.538597	-0.0035805	-1.7125E-06	-0.043088	-2.0608E-05	-0.046669	-2.2321E-05	478.2765372522429	42.613	0.20394	42.613	42.486	42.69	0					5	3	2	0	0	0	0.097615	1	16101	16101		58.679	3.9053	1	12104000			9129	4159	5034	5072	8844	8844					0.0595093821170849
EGPEGLKLI	9	Unmodified	_EGPEGLKLI_					0	0	0		ENSG00000152642|ENST00000282541|GPD1L	ENSG00000152642|ENST00000282541|GPD1L	ENSG00000152642|ENST00000282541|GPD1L	MULTI-MSMS	HCT116MG_D190212_S2	2	478.27642822265625	2	478.276575	954.538597	0.51045	0.00024414	-0.29606	-0.0001416	0.21439	0.00010254	478.27628829598365	42.629	0.31211	42.559	42.377	42.689	-0.069984					11	5	3	0	0	0	0.063511	1	16166	16166		68.081	6.7232	1	29860000			9130	4159	5034	5072	8845	8845					0.0595093821170849
EGPERPQDTP	10	Unmodified	_EGPERPQDTP_					0	0	0		ENSG00000282419|ENST00000632372|TEX13D	ENSG00000282419|ENST00000632372|TEX13D	ENSG00000282419|ENST00000632372|TEX13D	MULTI-SECPEP	HCT116MG_D190212_S3	3	563.0742797851562	2	563.262185	1124.50982	0.414	0.00023319	-0.0083516	-4.7041E-06	0.40565	0.00022849	563.2620165743311	23.523	0.26056	23.484	23.291	23.552	-0.03968					7	4	2	0	0	0	0.30526	1	8248	8248		3.2813	0	1	2502000			9131	6696	5035	5073	8846	8846					-0.04745831155378255
EGPGRDTLSA	10	Unmodified	_EGPGRDTLSA_					0	0	0		ENST00000493165.1_1_20:62710840-62711161:-|nuORF	ENST00000493165.1_1_20:62710840-62711161:-|nuORF	ENST00000493165.1_1_20:62710840-62711161:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	501.7457580566406	2	501.74617	1001.47779	0.38901	0.00019518	0.58657	0.00029431	0.97557	0.00048949	501.7460164078463	23.774	0.52113	23.712	23.478	23.999	-0.061449					12	9	2	0	0	0	0.37752	1	8406	8406		43.772	5.5968	1	10359000			9132	8356	5036	5074	8847	8847					-0.02289198838525408
EGPPGEKGGQ	10	Unmodified	_EGPPGEKGGQ_					0	0	0		COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant;COL5A1|p.G1351Efs*137|2|0.4|ENSG00000130635|chr9:134815605-134815605|C/-|frameshift_variant;COL5A1|p.D1172Tfs*104|1|0.22|ENSG00000130635|chr9:134810290-134810290|G/-|frameshift_variant;COL5A1|p.G997Rfs*17|1|0.4|ENSG00000130635|chr9:134801982-134801983|-/C|frameshift_variant;COL5A1|p.P966Lfs*108|1|0.41|ENSG00000130635|chr9:134796895-134796895|C/-|frameshift_variant;COL5A1|p.P870Qfs*204|1|0.5|ENSG00000130635|chr9:134786009-134786009|C/-|frameshift_variant;COL5A1|p.K933Rfs*141|1|0.32|ENSG00000130635|chr9:134795309-134795309|C/-|frameshift_variant;COL5A1|p.G997Afs*77|1|0.22|ENSG00000130635|chr9:134801983-134801983|C/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	478.228271484375	2	478.227613	954.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.649	1	20.447	19.947	20.947	-0.20133								0	0	0	0.81962	1	7081	7081		26.268	9.1552	1				9133	527	5037	5075	8848	8848					-0.038368703842706964
EGQFFQVPMEL	11	Unmodified	_EGQFFQVPMEL_					0	0	0			REV__PCDHB4|p.I311Tfs*2|1|0.18|ENSG00000081818|chr5:141122929-141122930|-/C|frameshift_variant	REV__PCDHB4|p.I311Tfs*2|1|0.18|ENSG00000081818|chr5:141122929-141122930|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	662.815673828125	2	662.815738	1323.61692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.52	1	18.596	18.096	19.096	0.076334								0	0	0	0.86121	1	6295	6295		24.991	0	1		+		9134	10880	5038	5076	8849	8849					-0.031939972653390214
EGQFFQVPMEL	11	Unmodified	_EGQFFQVPMEL_					0	0	0			REV__PCDHB4|p.I311Tfs*2|1|0.18|ENSG00000081818|chr5:141122929-141122930|-/C|frameshift_variant	REV__PCDHB4|p.I311Tfs*2|1|0.18|ENSG00000081818|chr5:141122929-141122930|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	662.8162231445312	2	662.815738	1323.61692	0.56177	0.00037235	-0.1298	-8.6036E-05	0.43197	0.00028631	662.8155209967872	18.75	0.98528	18.569	17.786	18.771	-0.18051					30	18	3	0	0	0	0.70662	1	6285	6285		19.362	0.98885	1	7009500	+		9135	10880	5038	5076	8850	8850					-0.031939972653390214
EGQFFQVPMEL	11	Unmodified	_EGQFFQVPMEL_					0	0	0			REV__PCDHB4|p.I311Tfs*2|1|0.18|ENSG00000081818|chr5:141122929-141122930|-/C|frameshift_variant	REV__PCDHB4|p.I311Tfs*2|1|0.18|ENSG00000081818|chr5:141122929-141122930|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	662.8150024414062	2	662.815738	1323.61692	0.56177	0.00037235	-0.1298	-8.6036E-05	0.43197	0.00028631	662.8155209967872	18.75	0.98528	18.569	17.786	18.771	-0.18051					30	18	3	0	0	0	0.34063	1	6060	6060		17.443	3.0373	1	7009500	+		9136	10880	5038	5076	8851	8851					-0.031939972653390214
EGQKLRNVL	9	Unmodified	_EGQKLRNVL_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;ENST00000563868.1_1_16:1818048-1818822:+|nuORF	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MSMS	HCT116MG_D190212_S2	2	528.8101806640625	2	528.811648	1055.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.97	1	51.787	51.287	52.287	-0.18369								0	0	0	0.76655	1	19953	19953		13.042	1.4022	1				9137	3596	5039	5077	8852	8852					0.08316236600171578
EGRDGFMSDP	10	Unmodified	_EGRDGFMSDP_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-3|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-3|PLCH1	MULTI-MSMS	HCT116MG_D190212_S2	2	555.7294921875	2	555.729663	1109.44477	0.39582	0.00021997	-0.4219	-0.00023446	-0.02608	-1.4493E-05	555.7295658649059	27.699	0.36098	27.357	27.139	27.5	-0.34201					13	6	3	0	0	0	0.82332	1	10089	10089		10.074	0.72649	1	18520000	+		9138	11518	5040	5078	8853	8853					-0.1055714895287565
EGRRRRRRRSS	11	Unmodified	_EGRRRRRRRSS_					0	0	0		ENST00000392701.7_1_2:166650587-166650761:-|nuORF	ENST00000392701.7_1_2:166650587-166650761:-|nuORF	ENST00000392701.7_1_2:166650587-166650761:-|nuORF	MSMS	HCT116MG_D190212_S4	4	736.4339599609375	2	736.430504	1470.84646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.462	1	46.091	45.591	46.591	-0.37134								0	0	0	0.9598	1	17154	17154		1.1933	0.84271	1				9139	7617	5041	5079	8854	8854					0.12986615305976557
EGRRRRRRRSS	11	Unmodified	_EGRRRRRRRSS_					0	0	0		ENST00000392701.7_1_2:166650587-166650761:-|nuORF	ENST00000392701.7_1_2:166650587-166650761:-|nuORF	ENST00000392701.7_1_2:166650587-166650761:-|nuORF	MSMS	HCT116MG_D190212_S4	4	736.4321899414062	2	736.430504	1470.84646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.108	1	46.738	46.238	47.238	-0.37038								0	0	0	0.9598	1	17414	17414		1.1933	0.84271	1				9140	7617	5041	5079	8855	8855					0.12986615305976557
EGRRRRRRRSS	11	Unmodified	_EGRRRRRRRSS_					0	0	0		ENST00000392701.7_1_2:166650587-166650761:-|nuORF	ENST00000392701.7_1_2:166650587-166650761:-|nuORF	ENST00000392701.7_1_2:166650587-166650761:-|nuORF	MSMS	HCT116MG_D190212_S4	4	736.4330444335938	2	736.430504	1470.84646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.281	1	48.916	48.416	49.416	-0.365								0	0	0	0.9598	1	18274	18274		1.1933	0.84271	1				9141	7617	5041	5079	8856	8856					0.12986615305976557
EGRVKRHRMSR	11	Unmodified	_EGRVKRHRMSR_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-6|USP48	REV__nc|ENSG00000090686|Q86UV5-6|USP48	MSMS	HCT116MG_D190212_S2	2	706.3935546875	2	706.39421	1410.77387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.07	1	57.9	57.4	58.4	-0.1703								0	0	0	0.94385	1	22433	22433		9.544	0.79857	1		+		9142	10988	5042	5080	8857	8857					0.08491145188168048
EGSTEDEGK	9	Unmodified	_EGSTEDEGK_					0	0	0		ENSG00000204065|ENST00000372680|TCEAL5	ENSG00000204065|ENST00000372680|TCEAL5	ENSG00000204065|ENST00000372680|TCEAL5	MSMS	HCT116MG_D190212_S2	2	476.1986083984375	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2241	1	3.1837	2.6837	3.6837	-0.040353								0	0	0	0.76973	1	1032	1032		1.8442	1.0506	1				9143	6319	5043	5081	8858	8858					-0.09429177100366815
EGTEATVAT	9	Unmodified	_EGTEATVAT_					0	0	0		SERPINA9|p.A368V|1|0.07|ENSG00000170054|chr14:94463244-94463244|G/A|missense_variant	SERPINA9|p.A368V|1|0.07|ENSG00000170054|chr14:94463244-94463244|G/A|missense_variant	SERPINA9|p.A368V|1|0.07|ENSG00000170054|chr14:94463244-94463244|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	878.4110107421875	1	878.410168	877.402892	0.88512	0.0007775	0.020002	1.757E-05	0.90512	0.00079507	878.4100748549521	26.675	0.41626	26.526	26.307	26.723	-0.14924					12	7	2	0	0	0	0.050578	1	9570	9570		74.423	13.065	1	23653000			9144	18143	5044	5082	8859	8859					-0.04071381369760729
EGTEATVAT	9	Unmodified	_EGTEATVAT_					0	0	0		SERPINA9|p.A368V|1|0.07|ENSG00000170054|chr14:94463244-94463244|G/A|missense_variant	SERPINA9|p.A368V|1|0.07|ENSG00000170054|chr14:94463244-94463244|G/A|missense_variant	SERPINA9|p.A368V|1|0.07|ENSG00000170054|chr14:94463244-94463244|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	878.4089965820312	1	878.410168	877.402892	0.7904	0.0006943	-0.017161	-1.5074E-05	0.77324	0.00067922	878.4100107790983	26.82	0.46737	26.509	26.275	26.742	-0.3114					16	8	3	0	0	0	0.050578	1	9554	9554		74.423	19.649	1	12302000			9145	18143	5044	5082	8860	8860					-0.04071381369760729
EGVMREQP	8	Unmodified	_EGVMREQP_					0	0	0			REV__ENSG00000175315|ENST00000312134|CST6	REV__ENSG00000175315|ENST00000312134|CST6	MULTI-MSMS	HCT116MG_D190212_S2	2	472.7434997558594	2	473.226559	944.438566	0.32515	0.00015387	-0.29331	-0.0001388	0.031839	1.5067E-05	473.2263947889687	22.18	0.31238	21.795	21.583	21.896	-0.38513					7	5	2	0	0	0	0.64404	1	7784	7784		28.487	4.4663	1	4641900	+		9146	13509	5045	5083	8861	8861					-0.0358762239374073
EGVQDDLFWLT	11	Unmodified	_EGVQDDLFWLT_					0	0	0		ENSG00000187608|ENST00000649529|ISG15	ENSG00000187608|ENST00000649529|ISG15	ENSG00000187608|ENST00000649529|ISG15	MSMS	HCT116MG_D190212_S4	4	661.8160400390625	2	661.816793	1321.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.944	1	27.623	27.123	28.123	-0.32157								0	0	0	0.89672	1	10027	10027		20.415	2.0414	1				9147	5949	5046	5084	8862	8862					-0.028912452559325175
EGVQKFFELLQ	11	Unmodified	_EGVQKFFELLQ_					0	0	0			REV__ENST00000520580.5_1_5:65455027-65458421:+|nuORF	REV__ENST00000520580.5_1_5:65455027-65458421:+|nuORF	MSMS	HCT116MG_D190212_S3	3	669.3573608398438	2	669.358628	1336.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.416	1	19.476	18.976	19.976	0.05983								0	0	0	0.94755	1	6656	6656		7.609	0.97858	1		+		9148	12662	5047	5085	8863	8863					0.04781910911810883
EGVSGSSW	8	Unmodified	_EGVSGSSW_					0	0	0		nc|ENSG00000184313|Q68CQ1-4|MROH7	nc|ENSG00000184313|Q68CQ1-4|MROH7	nc|ENSG00000184313|Q68CQ1-4|MROH7	MULTI-MSMS	HCT116MG_D190212_S3	3	808.3478393554688	1	808.347174	807.339897	0.87878	0.00071036	-0.22441	-0.0001814	0.65437	0.00052896	808.346901175099	22.223	1.1501	22.224	21.465	22.615	0.00074577					39	21	3	0	0	0	0.69862	1	7855	7855		23.148	1.6114	1	10024000			9149	9577	5048	5086	8864	8864					-0.07147902367148617
EGVSGSSW	8	Unmodified	_EGVSGSSW_					0	0	0		nc|ENSG00000184313|Q68CQ1-4|MROH7	nc|ENSG00000184313|Q68CQ1-4|MROH7	nc|ENSG00000184313|Q68CQ1-4|MROH7	MULTI-MSMS	HCT116MG_D190212_S4	4	808.34765625	1	808.347174	807.339897	0.9102	0.00073575	-0.25062	-0.00020259	0.65957	0.00053317	808.3467749712842	22.256	1.2462	22.028	21.209	22.455	-0.22777					45	23	3	0	0	0	0.69862	1	7747	7747		23.148	3.8914	1	9820800			9150	9577	5048	5086	8865	8865					-0.07147902367148617
EGVSPEYL	8	Unmodified	_EGVSPEYL_					0	0	0		CDAN1|p.H1052Y|1|0.45|ENSG00000140326|chr15:42726360-42726360|G/A|missense_variant	CDAN1|p.H1052Y|1|0.45|ENSG00000140326|chr15:42726360-42726360|G/A|missense_variant	CDAN1|p.H1052Y|1|0.45|ENSG00000140326|chr15:42726360-42726360|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	893.4249267578125	1	893.42509	892.417813	0.72767	0.00065012	0.083337	7.4455E-05	0.81101	0.00072458	893.4251080307403	42.414	0.25948	42.038	41.891	42.15	-0.37565					6	4	2	0	0	0	0.43493	1	15612	15612		46.921	6.4723	1	2350100			9151	378	5049	5087	8866	8866					-0.0326988950176883
EGWPYEQHV	9	Unmodified	_EGWPYEQHV_					0	0	0			REV__ENSG00000256394|ENST00000537611|ASIC5	REV__ENSG00000256394|ENST00000537611|ASIC5	MULTI-MSMS	HCT116MG_D190212_S4	4	572.7567749023438	2	572.756538	1143.49852	-0.095893	-5.4923E-05	0.028	1.6037E-05	-0.067892	-3.8886E-05	572.7565180891842	16.133	1.0026	15.969	15.304	16.306	-0.16365					38	19	3	0	0	0	0.66792	1	5132	5132		7.2892	7.2892	1	4861700	+		9152	14400	5050	5088	8867	8867					-0.06748608458860872
EGYDPTVENTY	11	Unmodified	_EGYDPTVENTY_					0	0	0		ENST00000550797.1_1_12:49458888-49462935:-|nuORF;ENSG00000167550|ENST00000301068|RHEBL1	ENST00000550797.1_1_12:49458888-49462935:-|nuORF	ENST00000550797.1_1_12:49458888-49462935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	644.273193359375	2	644.272415	1286.53028	0.73341	0.00047251	-0.16132	-0.00010394	0.57208	0.00036858	644.2723543353371	29.889	0.53006	29.653	29.396	29.926	-0.23655					22	9	3	0	0	0	0.69138	1	10857	10857		24.991	7.5483	1	7631900			9153	4932	5051	5089	8868	8868					-0.10152705286213859
EGYGPPPP	8	Unmodified	_EGYGPPPP_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MSMS	HCT116MG_D190212_S2	2	407.19122314453125	2	407.192511	812.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.821	1	34.663	34.163	35.163	-0.15834								0	0	0	0.8837	1	12968	12968		6.3541	0	1				9154	1954	5052	5090	8869	8869					-0.04322123982103676
EGYLYSVKGK	10	Unmodified	_EGYLYSVKGK_					0	0	0		tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	572.3056030273438	2	572.305864	1142.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.625	1	32.414	31.914	32.914	-0.21135								0	0	0	0.88261	1	12077	12077		18.146	0	1				9155	18643	5053	5091	8870	8870					0.031579947861928304
EHAAWHNRL	9	Unmodified	_EHAAWHNRL_					0	0	0			REV__ENST00000366641.3_1_1:231556786-231556840:-|nuORF	REV__ENST00000366641.3_1_1:231556786-231556840:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	378.5253601074219	3	378.524818	1132.55262	-0.28086	-0.00010631	1.3159	0.00049809	1.035	0.00039178	378.52537488453356	21.682	0.25947	21.297	21.167	21.427	-0.38503					7	4	2	0	0	0	0.59184	1	7679	7679		7.609	0	1	11007000	+		9156	15108	5054	5092	8871	8871					-0.008349715166332317
EHADYLPPP	9	Unmodified	_EHADYLPPP_					0	0	0			REV__ENSG00000109511|ENST00000359299|ANXA10	REV__ENSG00000109511|ENST00000359299|ANXA10	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.1389770507812	2	519.748182	1037.48181	0.10904	5.6676E-05	0.25575	0.00013292	0.36479	0.0001896	519.7483679796126	38.13	0.20674	38.037	37.908	38.115	-0.09301					5	3	2	0	0	0	0.24195	1	14286	14286		7.9102	1.5561	1	12729000	+		9157	11373	5055	5093	8872	8872					-0.03543109344809636
EHCTCPMC	8	Unmodified	_EHCTCPMC_					0	0	0		nc|ENSG00000113269|Q86XS8-2|RNF130;ENSG00000113269|ENST00000521389|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	MSMS	HCT116MG_D190212_S2	2	462.1466369628906	2	462.147551	922.28055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.169	1	15.835	15.335	16.335	-0.33451								0	0	0	0.8837	1	5423	5423		5.7604	2.8712	1				9158	2376	5056	5094	8873	8873					-0.18369904240489632
EHDAQRQRGFH	11	Unmodified	_EHDAQRQRGFH_					0	0	0			REV__AluY_dup7324|chr1:206929266-206929570:+|9.241215358437865|0.0815861706738351|6.82|448.0|5|2|sense	REV__AluY_dup7324|chr1:206929266-206929570:+|9.241215358437865|0.0815861706738351|6.82|448.0|5|2|sense	MSMS	HCT116MG_D190212_S1	1	690.8300170898438	2	690.829423	1379.64429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.448	1	11.448	10.948	11.948	0								0	0	0	0.96208	1	3604	3604		0	0	1		+		9159	9932	5057	5095	8874	8874					-0.030343328901381028
EHEAKELE	8	Unmodified	_EHEAKELE_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MULTI-MSMS	HCT116MG_D190212_S2	2	492.7353210449219	2	492.735271	983.45599	0.013431	6.6181E-06	0.023756	1.1706E-05	0.037188	1.8324E-05	492.73520035773896	30.483	0.30701	30.199	30.028	30.335	-0.28453					8	5	2	0	0	0	0.66848	1	11219	11219		26.341	10.494	1	39211000	+		9160	12832	5058	5096	8875	8875					-0.036400035870883585
EHFATPLY	8	Unmodified	_EHFATPLY_					0	0	0		FAT1|p.N652H|1|0.27|ENSG00000083857|chr4:186707874-186707874|T/G|missense_variant	FAT1|p.N652H|1|0.27|ENSG00000083857|chr4:186707874-186707874|T/G|missense_variant	FAT1|p.N652H|1|0.27|ENSG00000083857|chr4:186707874-186707874|T/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	489.3151550292969	2	489.239993	976.465432	0.10846	5.3061E-05	0.57728	0.00028243	0.68574	0.00033549	489.2402202674003	50.446	0.20566	50.446	50.317	50.523	0					5	3	2	0	0	0	0.24076	1	19253	19253		40.449	2.2974	1	11860000			9161	9152	5059	5097	8876	8876					-0.02374190510909102
EHFSIIRA	8	Unmodified	_EHFSIIRA_					0	0	0		ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	ENSG00000181588|ENST00000402693|MEX3D	MULTI-MSMS	HCT116MG_D190212_S2	2	486.76678466796875	2	486.766709	971.518865	0.21626	0.00010527	0.35107	0.00017089	0.56732	0.00027615	486.76657241023366	36.839	0.36065	36.724	36.499	36.859	-0.11478					14	6	4	0	0	0	0.11121	1	13820	13820		92.491	44.146	1	23609000			9162	5638	5060	5098	8877	8877					0.03196606991616591
EHFYLRRRRRV	11	Unmodified	_EHFYLRRRRRV_					0	0	0		MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30	MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant	MRPS30|p.F324Lfs*37|1|0.37|ENSG00000112996|chr5:44813220-44813220|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	794.4580078125	2	794.458199	1586.90185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.999	1	32.999	32.499	33.499	0								0	0	0	0.96149	1	12197	12197		0.30703	0	1				9163	2365	5061	5099	8878	8878					0.1318702877370015
EHGLFNLY	8	Unmodified	_EHGLFNLY_					0	0	0		nc|ENSG00000196208|Q4ZG55-4|GREB1;ENSG00000196208|ENST00000381486|GREB1	nc|ENSG00000196208|Q4ZG55-4|GREB1	nc|ENSG00000196208|Q4ZG55-4|GREB1	MULTI-SECPEP	HCT116MG_D190212_S2	2	496.27703857421875	2	496.745442	991.476331	0.53594	0.00026623	-0.12603	-6.2606E-05	0.40991	0.00020362	496.7452138977543	41.613	0.2043	41.545	41.396	41.601	-0.068199					5	3	2	0	0	0	0.31507	1	15709	15709		9.3474	0	1	4771400			9164	6050	5062	5100	8879	8879					-0.019747881366242837
EHGLMTKGL	9	Unmodified	_EHGLMTKGL_					0	0	0			REV__tr|U7SLS9|U7SLS9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02160PE=4SV=1	REV__tr|U7SLS9|U7SLS9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02160PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	492.7353210449219	2	493.260402	984.506251	0.027824	1.3724E-05	0.3071	0.00015148	0.33492	0.0001652	493.26048099748886	30.453	0.30701	30.168	30.028	30.335	-0.28453					7	5	2	0	0	0	0.22781	1	11219	11219		16.942	4.4107	1	23582000	+		9165	17711	5063	5101	8880	8880					0.013378275370769188
EHGSCQAGIA	10	Unmodified	_EHGSCQAGIA_					0	0	0		ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	MULTI-MSMS	HCT116MG_D190212_S2	2	486.7139892578125	2	486.713816	971.413079	0.14187	6.9049E-05	0.66852	0.00032538	0.81039	0.00039443	486.71389240045374	23.552	0.25962	23.169	22.988	23.247	-0.38324					7	4	2	0	0	0	0.48137	1	8422	8422		36.506	4.2007	1	23339000			9166	3874	5064	5102	8881	8881					-0.073770969161842
EHHRVHIGV	9	Unmodified	_EHHRVHIGV_					0	0	0		ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	MSMS	HCT116MG_D190212_S2	2	542.2938232421875	2	542.293956	1082.57336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.922	1	15.588	15.088	16.088	-0.33451								0	0	0	0.768	1	5324	5324		7.9102	0	1				9167	6090	5065	5103	8882	8882					0.03537618863038006
EHIFPDRIKEM	11	Unmodified	_EHIFPDRIKEM_					0	0	0			REV__ENSG00000198932|ENST00000537097|GPRASP1	REV__ENSG00000198932|ENST00000537097|GPRASP1	MSMS	HCT116MG_D190212_S3	3	707.858642578125	2	707.861012	1413.70747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.469	1	44.161	43.661	44.661	-0.30759								0	0	0	0.9465	1	16624	16624		8.1555	2.8586	1		+		9168	14168	5066	5104	8883	8883					0.017164717829018628
EHINAKCPNL	10	Unmodified	_EHINAKCPNL_					0	0	0		ENSG00000147471|ENST00000328195|PLPBP	ENSG00000147471|ENST00000328195|PLPBP	ENSG00000147471|ENST00000328195|PLPBP	MSMS	HCT116MG_D190212_S1	1	380.19256591796875	3	380.193969	1137.56008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.932	1	26.932	26.432	27.432	0								0	0	0	0.92272	1	9752	9752		6.1918	0	1				9169	3986	5067	5105	8884	8884					-0.0032000003120629117
EHIRFLSPY	9	Unmodified	_EHIRFLSPY_					0	0	0			REV__ENSG00000198551|ENST00000361113|ZNF627	REV__ENSG00000198551|ENST00000361113|ZNF627	MSMS	HCT116MG_D190212_S2	2	580.9609985351562	2	581.306198	1160.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.473	1	51.29	50.79	51.79	-0.18304								0	0	0	0.71969	1	19750	19750		18.135	1.1927	1		+		9170	14130	5068	5106	8885	8885					0.023968342258967823
EHIYWWIPMNE	11	Unmodified	_EHIYWWIPMNE_					0	0	0		ENST00000513654.5_1_4:122728758-122731165:+|nuORF	ENST00000513654.5_1_4:122728758-122731165:+|nuORF	ENST00000513654.5_1_4:122728758-122731165:+|nuORF	MSMS	HCT116MG_D190212_S4	4	759.35009765625	2	759.347737	1516.68092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.734	1	33.35	32.85	33.85	-0.38426								0	0	0	0.95581	1	12290	12290		3.2813	0	1				9171	8514	5069	5107	8886	8886					-0.05675217108432662
EHKGVIESV	9	Unmodified	_EHKGVIESV_					0	0	0		MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant;MAP2|p.T1474Nfs*22|1|0.33|ENSG00000078018|chr2:209696942-209696943|-/A|frameshift_variant;nc|ENSG00000078018|P11137-3|MAP2;ENSG00000078018|ENST00000682079|MAP2	MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	498.7536926269531	2	499.269281	996.52401	0.46621	0.00023276	0.0038506	1.9225E-06	0.47006	0.00023469	499.2694648322714	25.848	0.20732	25.479	25.343	25.55	-0.36914					8	3	3	0	0	0	0.24195	1	9350	9350		7.9102	0	1	10250000			9172	1356	5070	5108	8887	8887					0.025608660635725755
EHKLKLLRV	9	Unmodified	_EHKLKLLRV_					0	0	0			REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MSMS	HCT116MG_D190212_S3	3	379.2487487792969	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.079	1	49.764	49.264	50.264	-0.31525								0	0	0	0.76875	1	18875	18875		5.2969	2.5617	1		+		9173	9822	5071	5109	8888	8888					0.16173965801954182
EHKSEILKV	9	Unmodified	_EHKSEILKV_					0	0	0			REV__nc|ENSG00000186591|P62256-2|UBE2H	REV__nc|ENSG00000186591|P62256-2|UBE2H	MULTI-MSMS	HCT116MG_D190212_S1	1	361.5450744628906	3	361.544996	1081.61316	-0.19431	-7.0252E-05	0.16192	5.8541E-05	-0.032392	-1.1711E-05	361.5450052593597	18.949	0.20861	18.949	18.819	19.027	0					8	3	3	0	0	0	0.28785	1	6562	6562		32.037	7.1559	1	10464000	+		9174	13892	5072	5110	8889	8889					0.0756170102310989
EHKSEILKV	9	Unmodified	_EHKSEILKV_					0	0	0			REV__nc|ENSG00000186591|P62256-2|UBE2H	REV__nc|ENSG00000186591|P62256-2|UBE2H	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	361.544996	1081.61316	-0.19431	-7.0252E-05	0.16192	5.8541E-05	-0.032392	-1.1711E-05	361.5450052593597	18.949	0.20861	18.949	18.819	19.027	0	0	0	NaN	32.037	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10464000	+		9175	13892	5072	5110							0.0756170102310989
EHKSHSPRA	9	Unmodified	_EHKSHSPRA_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MSMS	HCT116MG_D190212_S3	3	350.1808776855469	3	350.18094	1047.52099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.038	1	36.736	36.236	37.236	-0.30113								0	0	0	0.76886	1	13706	13706		4.897	1.6157	1				9176	1159	5073	5111	8890	8890					-0.0008696427057657274
EHLETKSL	8	Unmodified	_EHLETKSL_					0	0	0		PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	478.7563171386719	2	478.756007	955.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.269	1	21.884	21.384	22.384	-0.3852								0	0	0	0.85589	1	7880	7880		18.135	0	1				9177	1232	5074	5112	8891	8891					0.017931771722260237
EHLLFVRR	8	Unmodified	_EHLLFVRR_					0	0	0		ENSG00000138411|ENST00000644978|HECW2;HECW2|p.R15Q|1|0.21|ENSG00000138411|chr2:196433380-196433380|C/T|missense_variant;HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant;HECW2|p.R1017Gfs*19|1|0.33|ENSG00000138411|chr2:196278614-196278614|G/-|frameshift_variant;HECW2|p.G1392Vfs*19|1|0.22|ENSG00000138411|chr2:196220913-196220913|C/-|frameshift_variant	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MSMS	HCT116MG_D190212_S1	1	535.3161010742188	2	535.3169	1068.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.167	1	55.167	54.667	55.667	0								0	0	0	0.8837	1	21177	21177		8.5933	0	1				9178	3556	5075	5113	8892	8892					0.08768264045261276
EHLLIYSI	8	Unmodified	_EHLLIYSI_					0	0	0			REV__tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	REV__tr|U7SP84|U7SP84_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01765PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	493.7076416015625	2	494.279118	986.543683	0.59855	0.00029585	-0.64839	-0.00032049	-0.049842	-2.4636E-05	494.27872163116956	42.697	0.31182	42.627	42.429	42.741	-0.069981					8	5	2	0	0	0	0.30262	1	16199	16199		4.756	0	1	6530200	+		9179	17745	5076	5114	8893	8893					0.04987242074309961
EHLLKNFDFDF	11	Unmodified	_EHLLKNFDFDF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MSMS	HCT116MG_D190212_S2	2	712.6695556640625	2	712.845884	1423.67722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.331	1	38.238	37.738	38.738	-0.09301								0	0	0	0.94538	1	14397	14397		8.7454	3.0136	1				9180	5400	5077	5115	8894	8894					-0.017675636106559978
EHLMQYGK	8	Unmodified	_EHLMQYGK_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MSMS	HCT116MG_D190212_S2	2	503.24554443359375	2	503.244752	1004.47495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.312	1	20.929	20.429	21.429	-0.38288								0	0	0	0.8837	1	7494	7494		13.508	0.97634	1				9181	3309	5078	5116	8895	8895					-0.027107454970291656
EHLSGETLNP	10	Unmodified	_EHLSGETLNP_					0	0	0			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MULTI-MSMS	HCT116MG_D190212_S1	1	548.3281860351562	2	548.767103	1095.51965	0.80304	0.00044068	0.40599	0.00022279	1.209	0.00066348	548.7672477755499	28.561	0.15974	28.561	28.482	28.641	0					4	2	2	0	0	0	0.82332	1	10380	10380		10.074	0	1	5763700	+		9182	11239	5079	5117	8896	8896					-0.02428643149983145
EHLTAMVID	9	Unmodified	_EHLTAMVID_					0	0	0			REV__ENSG00000283654|ENST00000637218|CIROP	REV__ENSG00000283654|ENST00000637218|CIROP	MULTI-MSMS	HCT116MG_D190212_S1	1	1028.5079345703125	1	1028.50811	1027.50083	0.29439	0.00030279	-0.78628	-0.0008087	-0.49189	-0.00050591	1028.507386832521	38.655	0.36387	38.655	38.436	38.8	0					10	6	2	0	0	0	0.49914	1	14465	14465		16.942	4.4107	1	26102000	+		9183	14478	5080	5118	8897	8897					-0.01181896045409303
EHLTAMVID	9	Unmodified	_EHLTAMVID_					0	0	0			REV__ENSG00000283654|ENST00000637218|CIROP	REV__ENSG00000283654|ENST00000637218|CIROP	MULTI-MSMS	HCT116MG_D190212_S2	2	1028.5086669921875	1	1028.50811	1027.50083	0.34552	0.00035537	0.17099	0.00017586	0.51651	0.00053123	1028.5083670345346	38.655	0.57899	38.57	38.33	38.909	-0.084618					23	10	4	0	0	0	0.59184	1	14506	14506		11.64	0	1	181120000	+		9184	14478	5080	5118	8898	8898					-0.01181896045409303
EHLTAMVID	9	Unmodified	_EHLTAMVID_					0	0	0			REV__ENSG00000283654|ENST00000637218|CIROP	REV__ENSG00000283654|ENST00000637218|CIROP	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1028.50811	1027.50083	0.29439	0.00030279	-0.78628	-0.0008087	-0.49189	-0.00050591	1028.507386832521	38.655	0.36387	38.655	38.436	38.8	0	0.038592	-0.00076118	NaN	16.942	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26102000	+		9185	14478	5080	5118							-0.01181896045409303
EHLTAMVID	9	Unmodified	_EHLTAMVID_					0	0	0			REV__ENSG00000283654|ENST00000637218|CIROP	REV__ENSG00000283654|ENST00000637218|CIROP	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1028.50811	1027.50083	0.34552	0.00035537	0.17099	0.00017586	0.51651	0.00053123	1028.5083670345346	38.655	0.57899	38.57	38.33	38.909	-0.084618	-0.046044	0.00022338	NaN	16.942	23	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181120000	+		9186	14478	5080	5118							-0.01181896045409303
EHLYCDVNY	9	Unmodified	_EHLYCDVNY_					0	0	0			REV__ENST00000290209.9_1_15:34548443-34549846:-|nuORF	REV__ENST00000290209.9_1_15:34548443-34549846:-|nuORF	MSMS	HCT116MG_D190212_S1	1	578.2440795898438	2	578.242406	1154.47026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.36	1	23.36	22.86	23.86	0								0	0	0	0.76818	1	8315	8315		7.2892	0	1		+		9187	14744	5081	5119	8899	8899					-0.10079674430448904
EHNLSELELQY	11	Unmodified	_EHNLSELELQY_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	HCT116MG_D190212_S2	2	687.8364868164062	2	687.830431	1373.64631	0.78143	0.00053749	0.25083	0.00017253	1.0323	0.00071002	687.8305520314062	33.082	0.46727	32.871	32.688	33.156	-0.21135					24	8	5	0	0	0	0.69138	1	12190	12190		24.991	5.629	1	698340000	+		9188	17165	5082	5120	8900	8900					-0.025567617155275002
EHPRLRRP	8	Unmodified	_EHPRLRRP_					0	0	0		ENSG00000243232|ENST00000289269|PCDHAC2;PCDHAC2|p.Y622Lfs*8|1|0.23|ENSG00000243232|chr5:140968624-140968625|-/T|frameshift_variant;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	ENSG00000243232|ENST00000289269|PCDHAC2	ENSG00000243232|ENST00000289269|PCDHAC2	MSMS	HCT116MG_D190212_S4	4	354.2076416015625	3	354.208941	1059.60499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.426	1	40.048	39.548	40.548	-0.37828								0	0	0	0.8837	1	14831	14831		7.2892	2.96	1				9189	6557	5083	5121	8901	8901					0.0775761161698938
EHPYPHKFH	9	Unmodified	_EHPYPHKFH_					0	0	0		ENST00000451871.1_1_13:42499863-42500601:+|nuORF	ENST00000451871.1_1_13:42499863-42500601:+|nuORF	ENST00000451871.1_1_13:42499863-42500601:+|nuORF	MSMS	HCT116MG_D190212_S4	4	596.2868041992188	2	596.28834	1190.56213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.693	1	33.309	32.809	33.809	-0.38426								0	0	0	0.76669	1	12274	12274		12.532	0.89125	1				9190	7989	5084	5122	8902	8902					-0.025532032311275543
EHQHDDIEQS	10	Unmodified	_EHQHDDIEQS_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MSMS	HCT116MG_D190212_S2	2	619.259033203125	2	619.257631	1236.50071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.595	1	23.212	22.712	23.712	-0.38324								0	0	0	0.90475	1	8417	8417		14.838	4.0143	1		+		9191	11102	5085	5123	8903	8903					-0.10808224511720255
EHQRPRKL	8	Unmodified	_EHQRPRKL_					0	0	0		nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;ITSN1|p.P1076Tfs*2|1|0.25|ENSG00000205726|chr21:33826852-33826853|-/A|frameshift_variant;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;ENSG00000205726|ENST00000381318|ITSN1	nc|ENSG00000205726|Q15811-5|ITSN1	nc|ENSG00000205726|Q15811-5|ITSN1	MSMS	HCT116MG_D190212_S1	1	355.20806884765625	3	355.20883	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8995	1	9.8995	9.3995	10.4	0								0	0	0	0.8837	1	3016	3016		3.9444	1.2092	1				9192	9614	5086	5124	8904	8904					0.07586191897121353
EHRQFPQH	8	Unmodified	_EHRQFPQH_					0	0	0			REV__ZNF791|p.K388Nfs*10|3|0.35|ENSG00000173875|chr19:12628688-12628688|A/-|frameshift_variant	REV__ZNF791|p.K388Nfs*10|3|0.35|ENSG00000173875|chr19:12628688-12628688|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	539.2614135742188	2	539.762489	1077.51043	0.71079	0.00038366	0.03312	1.7877E-05	0.74391	0.00040153	539.7625504846125	27.507	0.15398	27.165	27.037	27.191	-0.34201					4	2	2	0	0	0	0.28869	1	10000	10000		24.674	15.928	1	16765000	+		9193	13459	5087	5125	8905	8905					-0.02522946925000724
EHSGPGPR	8	Unmodified	_EHSGPGPR_					0	0	0			REV__ENSG00000182950|ENST00000332145|ODF3L1	REV__ENSG00000182950|ENST00000332145|ODF3L1	MULTI-MSMS	HCT116MG_D190212_S3	3	836.4014892578125	1	836.400941	835.393664	0.65476	0.00054764	-0.011597	-9.7001E-06	0.64316	0.00053794	836.400858672326	16.49	0.3121	16.575	16.445	16.757	0.085424					8	5	2	0	0	0	0.36164	1	5492	5492		53.576	6.6547	1	1619700	+		9194	13736	5089	5126	8906	8906					-0.03061685144768944
EHVAAVAG	8	Unmodified	_EHVAAVAG_					0	0	0		ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	MULTI-MSMS	HCT116MG_D190212_S2	2	753.3892211914062	1	753.388979	752.381703	1.0489	0.00079025	-0.35378	-0.00026653	0.69515	0.00052372	753.3884938476418	27.053	0.26431	26.701	26.554	26.818	-0.35254					6	4	2	0	0	0	0.47906	1	9834	9834		42.968	8.7807	1	11384000			9195	2798	5090	5127	8907	8907					-0.004393018879568444
EHWTKVSHK	9	Unmodified	_EHWTKVSHK_					0	0	0		nc|ENSG00000186642|O00408-5|PDE2A;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	MSMS	HCT116MG_D190212_S2	2	384.5350646972656	3	384.536724	1150.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.962	1	18.592	18.092	19.092	-0.3695								0	0	0	0.76823	1	6548	6548		7.1017	0.47135	1				9196	5900	5091	5128	8908	8908					0.019070659403496393
EIAAFHLDRIL	11	Unmodified	_EIAAFHLDRIL_					0	0	0		ENST00000226094.9_1_17:66537075-66550928:-|nuORF;ENST00000592847.1_1_17:66537075-66551874:-|nuORF;ENST00000515795.1_7:286228-299943:+|nuORF;FAM20A|p.K457Rfs*20|1|0.24|ENSG00000108950|chr17:68537733-68537733|T/-|frameshift_variant;ENSG00000108950|ENST00000592554|FAM20A;ENSG00000177706|ENST00000313766|FAM20C	ENST00000226094.9_1_17:66537075-66550928:-|nuORF	ENST00000226094.9_1_17:66537075-66550928:-|nuORF	MSMS	HCT116MG_D190212_S3	3	649.3646850585938	2	649.366787	1296.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.476	1	44.168	43.668	44.668	-0.30759								0	0	0	0.95686	1	16627	16627		2.7352	0.89096	1				9197	6764	5092	5129	8909	8909					0.0825303686854113
EIAHRFNEP	9	Unmodified	_EIAHRFNEP_					0	0	0		tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	371.22747802734375	3	371.520962	1111.54106	-0.19339	-7.1849E-05	0.21266	7.9009E-05	0.01927	7.1594E-06	371.52092444902416	32.056	0.57209	31.778	31.422	31.994	-0.27841					16	10	2	0	0	0	0.26696	1	11687	11687		1.0715	0	1	3745300			9198	18535	5093	5130	8910	8910					-0.010252133306039468
EIANLFEIY	9	Unmodified	_EIANLFEIY_					0	0	0		tr|U7T770|U7T770_FUSNUUPF0122proteinHMPREF1766_00136OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00136PE=3SV=1	tr|U7T770|U7T770_FUSNUUPF0122proteinHMPREF1766_00136OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00136PE=3SV=1	tr|U7T770|U7T770_FUSNUUPF0122proteinHMPREF1766_00136OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00136PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	556.2874755859375	2	556.28714	1110.55973	0.44642	0.00024834	0.010153	5.6481E-06	0.45657	0.00025399	556.2869554292155	53.789	0.31372	53.49	53.248	53.561	-0.29946					10	5	3	0	0	0	0.30117	1	20393	20393		30.637	3.7529	1	4105900			9199	18652	5094	5131	8911	8911					0.00886903520586202
EIATSDQDISI	11	Unmodified	_EIATSDQDISI_					0	0	0			REV__tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	REV__tr|U7SMA5|U7SMA5_FUSNURibosomalRNAsmallsubunitmethyltransferaseHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rsmHPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	596.29296875	2	596.290608	1190.56666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.742	1	28.742	28.242	29.242	0								0	0	0	0.91433	1	10479	10479		18.146	2.2992	1		+		9200	17723	5095	5132	8912	8912					-0.020998283895323766
EIDARIKVAQP	11	Unmodified	_EIDARIKVAQP_					0	0	0			REV__ENSG00000134001|ENST00000256383|EIF2S1	REV__ENSG00000134001|ENST00000256383|EIF2S1	MSMS	HCT116MG_D190212_S2	2	620.3543701171875	2	620.356419	1238.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.826	1	34.667	34.167	35.167	-0.15834								0	0	0	0.94012	1	12970	12970		11.495	3.3392	1		+		9201	12044	5096	5133	8913	8913					0.08848446488900663
EIDHAVHL	8	Unmodified	_EIDHAVHL_					0	0	0		ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	MSMS	HCT116MG_D190212_S2	2	467.2430419921875	2	467.243067	932.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.302	1	31.047	30.547	31.547	-0.25457								0	0	0	0.31385	1	11542	11542		53.576	23.351	1				9202	4659	5097	5134	8914	8914					0.0026432772061752985
EIDHHREQY	9	Unmodified	_EIDHHREQY_					0	0	0		CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant;nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57	CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant	CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	613.7815551757812	2	613.781076	1225.5476	0.44475	0.00027298	0.30737	0.00018866	0.75212	0.00046164	613.7812177282316	17.144	0.20832	16.795	16.665	16.873	-0.34933					6	3	2	0	0	0	0.23993	1	5839	5839		37.075	16.66	1	13886000			9203	354	5098	5135	8915	8915					-0.056153201698862176
EIDHHREQY	9	Unmodified	_EIDHHREQY_					0	0	0		CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant;nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57	CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant	CCDC57|p.A501Hfs*12|1|0.38|ENSG00000176155|chr17:82178479-82178479|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	613.781076	1225.5476	0.47028	0.00028865	-0.15669	-9.6171E-05	0.31359	0.00019248	613.7810103717692	16.551	0.20825	16.551	16.421	16.629	0	-0.12181	-0.00049036	NaN	37.075	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2728500			9204	354	5098	5135							-0.056153201698862176
EIDKKDWSVDY	11	Unmodified	_EIDKKDWSVDY_					0	0	0		tr|U7SNT6|U7SNT6_FUSNUDNA-directedRNApolymerasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoAPE=3SV=1	tr|U7SNT6|U7SNT6_FUSNUDNA-directedRNApolymerasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoAPE=3SV=1	tr|U7SNT6|U7SNT6_FUSNUDNA-directedRNApolymerasesubunitalphaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoAPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	699.835205078125	2	699.332807	1396.65106	1.0754	0.00075203	-0.26397	-0.0001846	0.81139	0.00056743	699.3326457330168	47.906	0.25727	47.773	47.584	47.841	-0.13281					11	4	3	0	0	0	0.67406	1	18289	18289		27.223	27.223	1	71182000			9205	18372	5099	5136	8916	8916					-0.03139877572766636
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	HCT116MG_D190212_S1	1	574.332763671875	2	573.774928	1145.5353	0.35017	0.00020092	0.17963	0.00010307	0.5298	0.00030399	573.7749189017578	26.787	0.36496	26.787	26.605	26.97	0					16	6	4	0	0	0	0.003706	1	9683	9683		155.03	83.104	1	39624000			9206	1836	5100	5137	8917	8917					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	HCT116MG_D190212_S1	1	382.85198974609375	3	382.852377	1145.5353	-0.15205	-5.8212E-05	-0.091822	-3.5154E-05	-0.24387	-9.3366E-05	382.85225727470544	26.787	0.26071	26.787	26.657	26.918	0					6	4	2	0	0	0	0.16144	1	9698	9698		34.932	15.57	1	11097000			9207	1836	5100	5137	8918	8918					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	HCT116MG_D190212_S2	2	573.775146484375	2	573.774928	1145.5353	0.55733	0.00031978	0.23951	0.00013743	0.79684	0.00045721	573.7750211621234	27.249	0.41582	26.897	26.713	27.128	-0.35254					18	7	4	0	0	0	0.0040527	1	9890	9890		149.91	80.809	1	149880000			9208	1836	5100	5137	8919	8919					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	HCT116MG_D190212_S2	2	382.8524169921875	3	382.852377	1145.5353	0.10253	3.9255E-05	0.37014	0.00014171	0.47267	0.00018096	382.85245318860865	27.246	0.31353	26.893	26.713	27.026	-0.35254					12	5	3	0	0	0	0.16144	1	9897	9897		34.932	9.9411	1	35411000			9209	1836	5100	5137	8920	8920					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	HCT116MG_D190212_S3	3	573.7747192382812	2	573.774928	1145.5353	0.49183	0.0002822	-0.29252	-0.00016784	0.19931	0.00011436	573.7746857329652	27.055	0.31274	26.885	26.703	27.016	-0.16933					8	5	2	0	0	0	0.12994	1	9736	9736		52.268	14.294	1	11282000			9210	1836	5100	5137	8921	8921					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MSMS	HCT116MG_D190212_S4	4	573.7750854492188	2	573.774928	1145.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.312	1	27	26.5	27.5	-0.3114								0	0	0	0.32687	1	9771	9771		38.176	15.439	1				9211	1836	5100	5137	8922	8922					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MATCH	HCT116MG_D190212_S3	3		3	382.852377	1145.5353	-0.039788	-1.5233E-05	0.072262	2.7666E-05	0.032475	1.2433E-05	382.85248482083915	27.055	0.2086	26.885	26.755	26.964	-0.16933	0.03023	-0.00020038	NaN	34.932	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3756400			9212	1836	5100	5137							-0.031643566329421446
EIEIKRRRRRR	11	Unmodified	_EIEIKRRRRRR_					0	0	0			REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	784.4896850585938	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.414	1	51.235	50.735	51.735	-0.17868								0	0	0	0.96149	1	19726	19726		0.30703	0.30703	1		+		9213	10173	5101	5138	8923	8923					0.20470389210800022
EIEIKRRRRRR	11	Unmodified	_EIEIKRRRRRR_					0	0	0			REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	784.369873046875	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.047	1	57.876	57.376	58.376	-0.1703								0	0	0	0.96157	1	22423	22423		0.26902	0.26902	1		+		9214	10173	5101	5138	8924	8924					0.20470389210800022
EIEMLLAIEI	10	Unmodified	_EIEMLLAIEI_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MSMS	HCT116MG_D190212_S2	2	587.3277587890625	2	587.325408	1172.63626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.764	1	47.632	47.132	48.132	-0.13281								0	0	0	0.90892	1	18228	18228		13.906	0.86358	1				9215	5302	5102	5139	8925	8925					0.056849590255751536
EIESEILKKRK	11	Unmodified	_EIESEILKKRK_					0	0	0		tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	687.1385498046875	2	686.911559	1371.80856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.994	1	53.994	53.494	54.494	0								0	0	0	0.95731	1	20693	20693		2.4985	1.169	1				9216	18610	5103	5140	8926	8926					0.13753246757278248
EIETPTQISLV	11	Unmodified	_EIETPTQISLV_					0	0	0		nc|ENSG00000152457|Q96SD1-4|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C;ENST00000378249.5_1_10:14977545-14995911:-|nuORF;ENST00000418843.5_2_10:14977491-14987187:-|nuORF	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	MULTI-MSMS	HCT116MG_D190212_S1	1	615.3343505859375	2	615.334818	1228.65508	0.5638	0.00034693	-0.67444	-0.00041501	-0.11064	-6.8082E-05	615.3342490781993	46.881	0.46651	46.881	46.699	47.165	0					14	8	2	0	0	0	0.74191	1	17832	17832		2.7352	0.67545	1	10576000			9217	650	5104	5141	8927	8927					0.049902119209718876
EIFNTSIGPV	10	Unmodified	_EIFNTSIGPV_					0	0	0			REV__tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	REV__tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	359.52545166015625	3	359.525602	1075.55498	-0.13529	-4.8639E-05	-0.58258	-0.00020945	-0.71786	-0.00025809	359.5254889263687	33.914	0.62334	33.739	33.5	34.124	-0.17512					17	11	3	0	0	0	0.57664	1	12611	12611		20.871	3.008	1	15697000	+		9218	17902	5105	5142	8928	8928					0.020220193778186513
EIFYCSVMAP	10	Unmodified	_EIFYCSVMAP_					0	0	0		OR4X1|p.C70F|1|0.31|ENSG00000176567|chr11:48264069-48264069|G/T|missense_variant	OR4X1|p.C70F|1|0.31|ENSG00000176567|chr11:48264069-48264069|G/T|missense_variant	OR4X1|p.C70F|1|0.31|ENSG00000176567|chr11:48264069-48264069|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	580.7902221679688	2	580.261753	1158.50895	0.45577	0.00026447	-0.037465	-2.1739E-05	0.4183	0.00024273	580.7639323788724	35.094	0.36312	34.797	34.544	34.907	-0.29707					9	6	2	0	0	0	0.28496	1	12949	12949		9.3831	0	1	4166200			9219	9718	5106	5143	8929	8929					-0.06396085120286443
EIFYLKCIRVN	11	Unmodified	_EIFYLKCIRVN_					0	0	0		ENST00000398117.1_1_18:60986227-60986365:-|nuORF	ENST00000398117.1_1_18:60986227-60986365:-|nuORF	ENST00000398117.1_1_18:60986227-60986365:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	467.2029113769531	3	466.59184	1396.75369	0.098545	4.598E-05	0.9559	0.00044602	1.0544	0.000492	466.5919454775549	19.065	0.15632	19.065	18.975	19.131	0					6	2	3	0	0	0	0.36207	1	6591	6591		16.275	7.9881	1	1928800			9220	7682	5107	5144	8930	8930					0.07118536685015897
EIGTLMDQVMV	11	Unmodified	_EIGTLMDQVMV_					0	0	0			REV__nc|ENSG00000172497|Q8WYK0-2|ACOT12	REV__nc|ENSG00000172497|Q8WYK0-2|ACOT12	MSMS	HCT116MG_D190212_S2	2	618.304443359375	2	618.304149	1234.59375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.631	1	55.446	54.946	55.946	-0.18565								0	0	0	0.9387	1	21449	21449		12.241	0	1		+		9221	9835	5108	5145	8931	8931					-0.014167593743650286
EIIEGMKF	8	Unmodified	_EIIEGMKF_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENST00000482167.1_1_2:198358046-198358962:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MSMS	HCT116MG_D190212_S2	2	483.75225830078125	2	483.751879	965.489204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.897	1	47.765	47.265	48.265	-0.13281								0	0	0	0.13016	1	18283	18283		78.149	20.678	1				9222	3862	5109	5146	8932	8932					0.0050790693126145925
EIIEGMKF	8	Unmodified	_EIIEGMKF_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;ENST00000482167.1_1_2:198358046-198358962:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S3	3	483.75201416015625	2	483.751879	965.489204	0.15915	7.699E-05	0.45418	0.00021971	0.61333	0.0002967	483.75197087030716	48.169	0.26092	47.853	47.671	47.932	-0.31596					9	4	3	0	0	0	0.51336	1	18121	18121		39.957	11.47	1	5256700			9223	3862	5109	5146	8933	8933					0.0050790693126145925
EIINWKQKLQI	11	Unmodified	_EIINWKQKLQI_					0	0	0		ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000255151|ENST00000527482|GLYATL1B	MULTI-MSMS	HCT116MG_D190212_S2	2	706.9160766601562	2	706.916644	1411.81874	0.78972	0.00055827	-1.22	-0.00086242	-0.43025	-0.00030415	706.9155897221044	40.01	0.20754	39.937	39.79	39.998	-0.072838					5	3	2	0	0	0	0.74191	1	15096	15096		6.1918	0.46	1	11040000			9224	6602	5110	5147	8934	8934					0.12929854482513292
EIKDLAIKRRQ	11	Unmodified	_EIKDLAIKRRQ_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	HCT116MG_D190212_S1	1	685.4170532226562	2	685.417343	1368.82013	0.81946	0.00056167	-0.21895	-0.00015007	0.60051	0.0004116	685.4165407285694	55.226	0.25369	55.226	55.095	55.349	0					8	4	3	0	0	0	0.74191	1	21228	21228		2.7352	1.5419	1	52898000			9225	1575	5111	5148	8935	8935					0.15047488571258327
EIKDLQEP	8	Unmodified	_EIKDLQEP_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	486.25421142578125	2	486.25584	970.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.372	1	24.105	23.605	24.605	-0.2679								0	0	0	0.71912	1	8584	8584		29.082	7.3349	1		+		9226	17960	5112	5149	8936	8936					0.010697574523760522
EIKEDALHPY	10	Unmodified	_EIKEDALHPY_					0	0	0			REV__ENST00000394430.5_1_11:64511793-64512018:-|nuORF	REV__ENST00000394430.5_1_11:64511793-64512018:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	608.3854370117188	2	607.806228	1213.5979	0.34212	0.00020794	0.04204	2.5552E-05	0.38416	0.0002335	607.8062193911073	43.354	0.25834	43.281	43.149	43.407	-0.073376					11	4	3	0	0	0	0.30961	1	16394	16394		8.7454	7.6739	1	30965000	+		9227	15338	5113	5150	8937	8937					-0.0003521056476074591
EIKENFTQN	9	Unmodified	_EIKENFTQN_					0	0	0			REV__ENSG00000173013|ENST00000310085|CCDC96	REV__ENSG00000173013|ENST00000310085|CCDC96	MULTI-SECPEP	HCT116MG_D190212_S2	2	562.34326171875	2	561.774928	1121.5353	0.76082	0.00042741	0.24698	0.00013875	1.0078	0.00056616	561.775182858998	47.743	0.25909	47.61	47.377	47.636	-0.13281					5	4	2	0	0	0	0.26422	1	18159	18159		1.6526	0	1	18366000	+		9228	13412	5114	5151	8938	8938					-0.020603566329327805
EIKENQKD	8	Unmodified	_EIKENQKD_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	502.25665283203125	2	502.256371	1002.49819	0.44352	0.00022276	-0.37308	-0.00018738	0.070443	3.538E-05	502.2563115913686	20.869	0.26013	20.486	20.338	20.598	-0.38288					6	4	2	0	0	0	0.69862	1	7341	7341		23.148	1.4018	1	6716800			9229	18679	5115	5152	8939	8939					-0.0029602817870681974
EIKGCDAIIV	10	Unmodified	_EIKGCDAIIV_					0	0	0			REV__ENSG00000166794|ENST00000300026|PPIB	REV__ENSG00000166794|ENST00000300026|PPIB	MSMS	HCT116MG_D190212_S3	3	530.7874145507812	2	530.788992	1059.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.014	1	36.713	36.213	37.213	-0.30113								0	0	0	0.64819	1	13696	13696		40.239	0.28188	1		+		9230	13123	5116	5153	8940	8940					0.03603250022774773
EIKKEKKKP	9	Unmodified	_EIKKEKKKP_					0	0	0			REV__ENST00000300952.6_1_19:1258723-1258873:+|nuORF	REV__ENST00000300952.6_1_19:1258723-1258873:+|nuORF	MSMS	HCT116MG_D190212_S4	4	564.3602294921875	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.921	1	37.538	37.038	38.038	-0.38283								0	0	0	0.76978	1	13884	13884		1.6526	0	1		+		9231	14784	5117	5154	8941	8941					0.14910839845242663
EIKKEVLSPV	10	Unmodified	_EIKKEVLSPV_					0	0	0		ENST00000427419.5_2_2:190445193-190446742:-|nuORF	ENST00000427419.5_2_2:190445193-190446742:-|nuORF	ENST00000427419.5_2_2:190445193-190446742:-|nuORF	MSMS	HCT116MG_D190212_S4	4	571.2312622070312	2	571.344989	1140.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.228	1	46.858	46.358	47.358	-0.37038								0	0	0	0.94857	1	17463	17463		8.7454	1.4562	1				9232	7823	5118	5155	8942	8942					0.11071427371439313
EIKKQIRSS	9	Unmodified	_EIKKQIRSS_					0	0	0		EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant	EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	544.8252563476562	2	544.824755	1087.63496	0.4592	0.00025018	0.28505	0.0001553	0.74425	0.00040549	544.8246952074707	52.867	1.4447	52.678	51.933	53.377	-0.18922					73	27	4	0	0	0	0.61923	1	20224	20224		10.074	1.3285	1	99043000			9233	1496	5119	5156	8943	8943					0.09464505771666154
EIKKSSSV	8	Unmodified	_EIKKSSSV_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MSMS	HCT116MG_D190212_S4	4	439.2519226074219	2	439.2531	876.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.728	1	49.366	48.866	49.866	-0.36213								0	0	0	0.8837	1	18455	18455		7.2892	0.56607	1				9234	3381	5120	5157	8944	8944					0.04846078660591502
EIKLRNKKLLY	11	Unmodified	_EIKLRNKKLLY_					0	0	0			REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	709.4453735351562	2	709.448111	1416.88167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.991	1	30.991	30.491	31.491	0								0	0	0	0.95925	1	11387	11387		1.4819	1.0236	1		+		9235	17978	5121	5158	8945	8945					0.1899042027057476
EIKNYLYLLC	10	Unmodified	_EIKNYLYLLC_					0	0	0		tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	tr|U7T2I4|U7T2I4_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00581PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	636.3412475585938	2	636.338849	1270.66315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.329	1	49.971	49.471	50.471	-0.35878								0	0	0	0.95089	1	18696	18696		4.5289	1.2476	1				9236	18578	5122	5159	8946	8946					0.03864067636732216
EIKPFKRFLRK	11	Unmodified	_EIKPFKRFLRK_					0	0	0		ENSG00000112562|ENST00000356284|SMOC2;nc|ENSG00000112562|Q9H3U7-2|SMOC2	ENSG00000112562|ENST00000356284|SMOC2	ENSG00000112562|ENST00000356284|SMOC2	MULTI-MSMS	HCT116MG_D190212_S2	2	731.4585571289062	2	731.456271	1460.89799	1.0939	0.00080018	1.6418	0.0012009	2.7357	0.0020011	731.4567270726919	56.64	0.47645	56.457	56.259	56.736	-0.18261					26	8	4	0	0	0	0.74191	1	21861	21861		2.086	0.75648	1	60521000			9237	2349	5123	5160	8947	8947					0.185975462272836
EIKRRLTLKRR	11	Unmodified	_EIKRRLTLKRR_					0	0	0			REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	490.7498779296875	3	490.323076	1467.9474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.506	1	39.205	38.705	39.705	-0.30137								0	0	0	0.95731	1	14667	14667		1.0136	0.55906	1		+		9238	13968	5124	5161	8948	8948					0.23214254236086163
EIKRRLTLKRR	11	Unmodified	_EIKRRLTLKRR_					0	0	0			REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	490.32177734375	3	490.323076	1467.9474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.578	1	39.198	38.698	39.698	-0.38055								0	0	0	0.95196	1	14544	14544		2.4348	2.0265	1		+		9239	13968	5124	5161	8949	8949					0.23214254236086163
EIKSYFCKIN	10	Unmodified	_EIKSYFCKIN_					0	0	0		tr|U7T099|U7T099_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00908PE=4SV=1	tr|U7T099|U7T099_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00908PE=4SV=1	tr|U7T099|U7T099_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00908PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	622.2439575195312	2	622.820824	1243.62709	0.49663	0.00030931	-0.43923	-0.00027356	0.057408	3.5755E-05	623.321899435169	41.351	0.51156	41.283	41.037	41.549	-0.068199					17	9	3	0	0	0	0.30457	1	15583	15583		7.609	7.609	1	53305000			9240	18545	5125	5162	8950	8950					0.015026104598746315
EIKSYLVRL	9	Unmodified	_EIKSYLVRL_					0	0	0		nc|ENSG00000188266|A2RU49-2|HYKK;nc|ENSG00000188266|A2RU49-3|HYKK;ENSG00000188266|ENST00000388988|HYKK	nc|ENSG00000188266|A2RU49-2|HYKK	nc|ENSG00000188266|A2RU49-2|HYKK	MSMS	HCT116MG_D190212_S3	3	374.2281799316406	3	374.229008	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.359	1	38.057	37.557	38.557	-0.30137								0	0	0	0.71969	1	14207	14207		12.241	0.74595	1				9241	5975	5126	5163	8951	8951					0.11014864436856442
EIKTRCPP	8	Unmodified	_EIKTRCPP_					0	0	0		ENST00000414543.5_1_6:28871573-28871822:-|nuORF	ENST00000414543.5_1_6:28871573-28871822:-|nuORF	ENST00000414543.5_1_6:28871573-28871822:-|nuORF	MSMS	HCT116MG_D190212_S1	1	472.25628662109375	2	472.25512	942.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.289	1	45.289	44.789	45.789	0								0	0	0	0.8837	1	17155	17155		12.532	3.9383	1				9242	7748	5127	5164	8952	8952					0.02213844882635385
EIKWIAKLL	9	Unmodified	_EIKWIAKLL_					0	0	0		MYO1H|p.N522Kfs*3|1|0.37|ENSG00000174527|chr12:109420989-109420990|-/A|frameshift_variant;MYO1H|p.T682Nfs*10|1|0.29|ENSG00000174527|chr12:109435063-109435064|-/A|frameshift_variant;nc|ENSG00000174527|Q8N1T3-3|MYO1H;nc|ENSG00000174527|Q8N1T3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	MYO1H|p.N522Kfs*3|1|0.37|ENSG00000174527|chr12:109420989-109420990|-/A|frameshift_variant	MYO1H|p.N522Kfs*3|1|0.37|ENSG00000174527|chr12:109420989-109420990|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	557.3540649414062	2	557.35516	1112.69577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.879	1	57.879	57.379	58.379	0								0	0	0	0.76739	1	22281	22281		10.074	2.1638	1				9243	5336	5128	5165	8953	8953					0.14392642821894697
EILACQELF	9	Unmodified	_EILACQELF_					0	0	0		CYP17A1|p.R449C|1|0.34|ENSG00000148795|chr10:102830884-102830884|G/A|missense_variant	CYP17A1|p.R449C|1|0.34|ENSG00000148795|chr10:102830884-102830884|G/A|missense_variant	CYP17A1|p.R449C|1|0.34|ENSG00000148795|chr10:102830884-102830884|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.1357421875	2	533.267893	1064.52123	0.4357	0.00023234	-1.981	-0.0010564	-1.5453	-0.00082404	533.2667813624666	51.181	0.30952	51.002	50.862	51.171	-0.17869					8	5	2	0	0	0	0.23301	1	19582	19582		10.824	2.9138	1	5984100			9244	626	5129	5166	8954	8954					-0.00844725385604761
EILGRFKNY	9	Unmodified	_EILGRFKNY_					0	0	0		PPP1R3A|p.K861Nfs*74|1|0.35|ENSG00000154415|chr7:113878509-113878509|T/-|frameshift_variant	PPP1R3A|p.K861Nfs*74|1|0.35|ENSG00000154415|chr7:113878509-113878509|T/-|frameshift_variant	PPP1R3A|p.K861Nfs*74|1|0.35|ENSG00000154415|chr7:113878509-113878509|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	570.3120727539062	2	570.314023	1138.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.145	1	33.76	33.26	34.26	-0.38558								0	0	0	0.768	1	12456	12456		7.9102	1.7044	1				9245	9772	5130	5167	8955	8955					0.04973120742965875
EILHTYQKEQR	11	Unmodified	_EILHTYQKEQR_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	HCT116MG_D190212_S3	3	722.8807983398438	2	722.88079	1443.74703	0.4909	0.00035486	0.73842	0.00053379	1.2293	0.00088865	722.8810759790781	38.912	0.25974	38.611	38.508	38.768	-0.30137					9	4	3	0	0	0	0.73156	1	14451	14451		10.151	3.4274	1	3302300			9246	5068	5131	5168	8956	8956					0.042903150580059446
EILHTYQKEQR	11	Unmodified	_EILHTYQKEQR_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;SIN3A|p.G659Afs*26|1|0.14|ENSG00000169375|chr15:75396375-75396375|C/-|frameshift_variant	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MSMS	HCT116MG_D190212_S4	4	722.8814086914062	2	722.88079	1443.74703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.062	1	38.681	38.181	39.181	-0.38055								0	0	0	0.94755	1	14339	14339		7.609	2.7119	1				9247	5068	5131	5168	8957	8957					0.042903150580059446
EILLYIEEQ	9	Unmodified	_EILLYIEEQ_					0	0	0			REV__ENST00000426868.6_1_13:38211042-38213329:-|nuORF	REV__ENST00000426868.6_1_13:38211042-38213329:-|nuORF	MSMS	HCT116MG_D190212_S1	1	575.3034057617188	2	575.305529	1148.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.787	1	22.787	22.287	23.287	0								0	0	0	0.76575	1	8084	8084		15.847	1.0089	1		+		9248	15560	5132	5169	8958	8958					0.028151553464795143
EILNRLLHR	9	Unmodified	_EILNRLLHR_					0	0	0		ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	MULTI-MSMS	HCT116MG_D190212_S4	4	582.3538208007812	2	582.354014	1162.69348	0.34313	0.00019982	-0.89238	-0.00051968	-0.54926	-0.00031986	582.3532563045925	55.296	0.46878	54.979	54.771	55.24	-0.31774					14	8	2	0	0	0	0.76185	1	20701	20701		1.8442	0	1	7255800			9249	4220	5133	5170	8959	8959					0.1186360713677459
EILNRLLHR	9	Unmodified	_EILNRLLHR_					0	0	0		ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	582.354014	1162.69348	0.4747	0.00027644	-0.80092	-0.00046642	-0.32622	-0.00018997	582.3533413194422	55.191	0.66236	55.003	54.611	55.273	-0.18797	0.011992	4.0512E-05	NaN	1.8442	26	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39463000			9250	4220	5133	5170							0.1186360713677459
EILNSYPLY	9	Unmodified	_EILNSYPLY_					0	0	0		ENST00000569118.1_1_16:69751908-69760342:-|nuORF	ENST00000569118.1_1_16:69751908-69760342:-|nuORF	ENST00000569118.1_1_16:69751908-69760342:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	556.2874145507812	2	556.28714	1110.55973	0.21461	0.00011939	0.011595	6.4504E-06	0.22621	0.00012584	556.2870172281902	53.587	0.36103	53.397	53.223	53.584	-0.1894					14	6	3	0	0	0	0.36396	1	20600	20600		24.674	1.5255	1	57854000			9251	8878	5134	5171	8960	8960					0.008869035205634646
EILRAKVYF	9	Unmodified	_EILRAKVYF_					0	0	0			REV__ENSG00000147117|ENST00000377073|ZNF157	REV__ENSG00000147117|ENST00000377073|ZNF157	MSMS	HCT116MG_D190212_S4	4	569.8351440429688	2	569.834591	1137.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.47	1	49.107	48.607	49.607	-0.36213								0	0	0	0.768	1	18350	18350		7.9102	0.62092	1		+		9252	12505	5135	5172	8961	8961					0.09130881782402867
EILRPRRTLQ	10	Unmodified	_EILRPRRTLQ_					0	0	0		C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	641.3905639648438	2	641.391128	1280.7677	0.55628	0.00035679	-0.55579	-0.00035648	0.00048658	3.1209E-07	641.3904652955679	55.224	0.56135	55.036	54.816	55.377	-0.18797					21	10	3	0	0	0	0.87699	1	21301	21301		4.1895	4.1895	1	29001000			9253	295	5136	5173	8962	8962					0.13854950228324014
EILRPRRTLQ	10	Unmodified	_EILRPRRTLQ_					0	0	0		C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	641.391128	1280.7677	0.5905	0.00037874	-0.30964	-0.0001986	0.28086	0.00018014	641.3903838195074	55.426	0.41672	55.108	54.928	55.344	-0.31775	0.035933	0.00021219	NaN	4.1895	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3980200			9254	295	5136	5173							0.13854950228324014
EIMFREEFWRR	11	Unmodified	_EIMFREEFWRR_					0	0	0		HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant;HSPG2|p.C2696Sfs*49|1|0.18|ENSG00000142798|chr1:21847425-21847431|GCCCGGC/-|frameshift_variant;HSPG2|p.P3112Lfs*13|1|0.47|ENSG00000142798|chr1:21841279-21841279|G/-|frameshift_variant;HSPG2|p.P3071Hfs*100|1|0.06|ENSG00000142798|chr1:21841639-21841655|GATGATGGAGCCATTGG/-|frameshift_variant;ENSG00000142798|ENST00000374695|HSPG2	HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant	HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	799.8953857421875	2	799.89846	1597.78237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.746	1	43.746	43.246	44.246	0								0	0	0	0.95954	1	16536	16536		1.3295	1.0225	1				9255	3777	5137	5174	8963	8963					0.0073865431413651095
EINPDSAQP	9	Unmodified	_EINPDSAQP_					0	0	0		ENST00000495652.1_1_22:41231562-41231847:-|nuORF;ENST00000456632.1_1_X:92543289-92543514:-|nuORF;nc|ENSG00000232150|Q8IZP2|ST13P4;ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant;nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	ENST00000495652.1_1_22:41231562-41231847:-|nuORF	ENST00000495652.1_1_22:41231562-41231847:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	485.2606506347656	2	485.727446	969.44034	0.1666	8.092E-05	-1.5802	-0.00076754	-1.4136	-0.00068662	485.7266542764286	35.075	0.51919	34.778	34.492	35.011	-0.29707					14	9	2	0	0	0	0.24622	1	12898	12898		11.64	0	1	3889800			9256	1702	5138	5175	8964	8964					-0.04560290104143405
EINPVEEYKKN	11	Unmodified	_EINPVEEYKKN_					0	0	0			REV__ABCA5|p.I105Nfs*3|1|0.03|ENSG00000154265|chr17:69309417-69309418|-/T|frameshift_variant	REV__ABCA5|p.I105Nfs*3|1|0.03|ENSG00000154265|chr17:69309417-69309418|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	454.9169006347656	3	454.901508	1361.6827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.496	1	19.496	18.996	19.996	0								0	0	0	0.95017	1	6764	6764		6.2344	0	1		+		9257	9819	5139	5176	8965	8965					0.016321151812007884
EIQLHNHWAQ	10	Unmodified	_EIQLHNHWAQ_					0	0	0		SHBG|p.L175Afs*39|1|0.38|ENSG00000129214|chr17:7631322-7631323|-/G|frameshift_variant;SHBG|p.L175Cfs*45|1|0.53|ENSG00000129214|chr17:7631323-7631323|G/-|frameshift_variant;nc|ENSG00000129214|P04278-2|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;SHBG|p.C362Afs*2|1|0.14|ENSG00000129214|chr17:7633223-7633223|T/-|frameshift_variant;nc|ENSG00000129214|P04278-5|SHBG;CON__Q6T181;ENSG00000129214|ENST00000380450|SHBG	SHBG|p.L175Afs*39|1|0.38|ENSG00000129214|chr17:7631322-7631323|-/G|frameshift_variant	SHBG|p.L175Afs*39|1|0.38|ENSG00000129214|chr17:7631322-7631323|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	638.3656005859375	2	638.315086	1274.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.986	1	31.756	31.256	32.256	-0.23009								0	0	0	0.91638	1	11820	11820		12.241	0.74595	1			+	9258	582	5140	5177	8966	8966					-0.010704505192506986
EIRFFPQNQIK	11	Unmodified	_EIRFFPQNQIK_					0	0	0		DNAJC10|p.P639Qfs*22|1|0.47|ENSG00000077232|chr2:182757788-182757788|T/-|frameshift_variant	DNAJC10|p.P639Qfs*22|1|0.47|ENSG00000077232|chr2:182757788-182757788|T/-|frameshift_variant	DNAJC10|p.P639Qfs*22|1|0.47|ENSG00000077232|chr2:182757788-182757788|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	710.3922729492188	2	710.390793	1418.76703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.036	1	57.763	57.263	58.263	-0.27333								0	0	0	0.9387	1	22068	22068		12.241	4.0851	1				9259	715	5141	5178	8967	8967					0.07440110788616039
EIRIIPAKKYV	11	Unmodified	_EIRIIPAKKYV_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MSMS	HCT116MG_D190212_S1	1	443.9486389160156	3	443.946612	1328.81801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.436	1	55.436	54.936	55.936	0								0	0	0	0.95665	1	21287	21287		2.8433	0.21205	1				9260	2503	5142	5179	8968	8968					0.16675059833460182
EIRKENKREKR	11	Unmodified	_EIRKENKREKR_					0	0	0		ENSG00000107560|ENST00000355624|RAB11FIP2;nc|ENSG00000107560|Q7L804-2|RAB11FIP2;ENST00000483413.1_1_10:119798481-119799811:-|nuORF	ENSG00000107560|ENST00000355624|RAB11FIP2	ENSG00000107560|ENST00000355624|RAB11FIP2	MULTI-MSMS	HCT116MG_D190212_S2	2	743.9363403320312	2	743.434055	1484.85356	0.95364	0.00070897	0.44329	0.00032956	1.3969	0.0010385	743.4341868710262	54.117	0.61694	53.928	53.584	54.201	-0.1894					15	11	2	0	0	0	0.74191	1	20819	20819		2.9952	1.5133	1	10128000			9261	2117	5143	5180	8969	8969					0.13052490343170575
EIRRLHQYVKF	11	Unmodified	_EIRRLHQYVKF_					0	0	0		NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENST00000525980.5_1_9:134025776-134070755:+|nuORF	NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant	NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	496.9539489746094	3	496.952649	1487.83612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.383	1	46.07	45.57	46.57	-0.31237								0	0	0	0.95976	1	17389	17389		1.2148	0.10508	1				9262	2952	5144	5181	8970	8970					0.11171194808162
EIRRLHQYVKF	11	Unmodified	_EIRRLHQYVKF_					0	0	0		NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;ENST00000525980.5_1_9:134025776-134070755:+|nuORF	NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant	NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	496.9544677734375	3	496.952649	1487.83612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.429	1	53.126	52.626	53.626	-0.30305								0	0	0	0.96111	1	20221	20221		0.50596	0.051438	1				9263	2952	5144	5181	8971	8971					0.11171194808162
EIRSQPVP	8	Unmodified	_EIRSQPVP_					0	0	0		ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	ENSG00000068079|ENST00000415816|IFI35	ENSG00000068079|ENST00000415816|IFI35	MULTI-MSMS	HCT116MG_D190212_S2	2	463.2588195800781	2	463.258717	924.50288	-0.081502	-3.7757E-05	0.37715	0.00017472	0.29565	0.00013696	463.2587366796764	30.476	0.35864	30.191	30.028	30.387	-0.28453					14	6	3	0	0	0	0.36164	1	11250	11250		53.576	5.8269	1	12821000			9264	1196	5145	5182	8972	8972					0.03760900754718932
EIRVPLRRLKP	11	Unmodified	_EIRVPLRRLKP_					0	0	0		ENSG00000149927|ENST00000350119|DOC2A;nc|ENSG00000149927|Q14183-2|DOC2A;ENST00000561671.5_1_16:30017707-30020344:-|nuORF	ENSG00000149927|ENST00000350119|DOC2A	ENSG00000149927|ENST00000350119|DOC2A	MSMS	HCT116MG_D190212_S3	3	689.4310913085938	2	688.94607	1375.87759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.282	1	43.974	43.474	44.474	-0.30759								0	0	0	0.95925	1	16549	16549		1.4819	0.15237	1				9265	4076	5146	5183	8973	8973					0.20468375567497787
EITFRQSFF	9	Unmodified	_EITFRQSFF_					0	0	0		nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1;ENST00000472823.5_1_6:29576484-29596894:-|nuORF;GABBR1|p.A575Sfs*2|3|0.31|ENSG00000204681|chr6:29609366-29609367|-/G|frameshift_variant;nc|ENSG00000204681|Q9UBS5-5|GABBR1;GABBR1|p.P574Qfs*32|1|0.18|ENSG00000204681|chr6:29609367-29609367|G/-|frameshift_variant	nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	MSMS	HCT116MG_D190212_S2	2	587.7982788085938	2	587.798206	1173.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.783	1	56.604	56.104	57.104	-0.17904								0	0	0	0.76603	1	21914	21914		14.838	0.25658	1				9266	6348	5147	5184	8974	8974					0.002011279889757134
EITIRRKE	8	Unmodified	_EITIRRKE_					0	0	0			REV__PHF23|p.R29I|1|0.22|ENSG00000040633|chr17:7237458-7237458|C/A|missense_variant	REV__PHF23|p.R29I|1|0.22|ENSG00000040633|chr17:7237458-7237458|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1044.616943359375	1	1044.61602	1043.60874	0.69393	0.00072489	-0.24547	-0.00025642	0.44846	0.00046847	1044.6155210992235	51.272	0.30884	51.272	51.091	51.4	0					14	5	3	0	0	0	0.73076	1	19571	19571		19.439	2.4967	1	181540000	+		9267	17415	5148	5185	8975	8975					0.08868236600187629
EITTRTRKSLI	11	Unmodified	_EITTRTRKSLI_					0	0	0			REV__ENST00000262455.6_1_9:102782940-102782994:-|nuORF	REV__ENST00000262455.6_1_9:102782940-102782994:-|nuORF	MSMS	HCT116MG_D190212_S1	1	659.3965454101562	2	659.396076	1316.7776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.037	1	55.037	54.537	55.537	0								0	0	0	0.93552	1	21123	21123		13.906	4.5229	1		+		9268	14638	5149	5186	8976	8976					0.13188093443045545
EIVDRFCNKTF	11	Unmodified	_EIVDRFCNKTF_					0	0	0		tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	tr|U7SS49|U7SS49_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01543PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	457.89520263671875	3	457.8957	1370.66527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.212	1	32.83	32.33	33.33	-0.38223								0	0	0	0.94416	1	12097	12097		7.4771	0	1				9269	18410	5150	5187	8977	8977					-0.005235036254816805
EIVEPTYSAK	10	Unmodified	_EIVEPTYSAK_					0	0	0			REV__nc|ENSG00000185264|O43247-2|CIMIP4	REV__nc|ENSG00000185264|O43247-2|CIMIP4	MULTI-SECPEP	HCT116MG_D190212_S2	2	568.7953491210938	2	568.795329	1135.5761	0.50535	0.00028744	-0.36016	-0.00020486	0.14519	8.2583E-05	568.7951903113538	56.68	0.26681	56.498	56.364	56.631	-0.18261					5	4	2	0	0	0	0.29999	1	21905	21905		18.146	0	1	9939400	+		9270	13837	5151	5188	8978	8978					0.013739846866428707
EIVRTKEY	8	Unmodified	_EIVRTKEY_					0	0	0		ENSG00000256436|ENST00000390675|TAS2R31	ENSG00000256436|ENST00000390675|TAS2R31	ENSG00000256436|ENST00000390675|TAS2R31	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.284912109375	2	519.284931	1036.55531	0.29043	0.00015082	0.049906	2.5915E-05	0.34034	0.00017673	519.2847320931841	40.148	0.31229	40.076	39.945	40.258	-0.072838					7	5	2	0	0	0	0.32291	1	15170	15170		3.9444	0	1	13243000			9271	6610	5152	5189	8979	8979					0.03849439097666618
EIWQFLAL	8	Unmodified	_EIWQFLAL_					0	0	0		nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	MSMS	HCT116MG_D190212_S2	2	510.2796325683594	2	510.28166	1018.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.841	1	41.773	41.273	42.273	-0.068199								0	0	0	0.72655	1	15822	15822		28.487	4.4663	1				9272	3396	5153	5190	8980	8980					0.0402354593693417
EIWRCYWQYLL	11	Unmodified	_EIWRCYWQYLL_					0	0	0		nc|ENSG00000166881|O14524-2|NEMP1;ENSG00000166881|ENST00000300128|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	nc|ENSG00000166881|O14524-2|NEMP1	MSMS	HCT116MG_D190212_S4	4	524.9283447265625	3	524.927112	1571.75951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.806	1	22.569	22.069	23.069	-0.23758								0	0	0	0.95954	1	7954	7954		1.3296	0.11481	1				9273	4886	5154	5191	8981	8981					-0.003503648033074569
EIWRGQMSKP	10	Unmodified	_EIWRGQMSKP_					0	0	0		nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0|TMEM44	MSMS	HCT116MG_D190212_S1	1	616.3179931640625	2	616.31624	1230.61793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.365	1	33.365	32.865	33.865	0								0	0	0	0.90892	1	12345	12345		13.906	2.2658	1				9274	9488	5155	5192	8982	8982					0.011842618942182526
EIYEMRPLSPP	11	Unmodified	_EIYEMRPLSPP_					0	0	0		ENSG00000006695|ENST00000261643|COX10	ENSG00000006695|ENST00000261643|COX10	ENSG00000006695|ENST00000261643|COX10	MSMS	HCT116MG_D190212_S2	2	666.3345336914062	2	666.336838	1330.65912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.557	1	47.43	46.93	47.93	-0.1264								0	0	0	0.88801	1	18144	18144		21.537	1.0834	1				9275	834	5156	5193	8983	8983					0.00701978143024462
EIYYKKKK	8	Unmodified	_EIYYKKKK_					0	0	0		tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	367.22265625	3	367.221853	1098.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.145	1	55.839	55.339	56.339	-0.30626								0	0	0	0.8837	1	21040	21040		1.6526	0	1				9276	18594	5157	5194	8984	8984					0.09835479408138781
EKALAEKEHAA	11	Unmodified	_EKALAEKEHAA_					0	0	0			REV__CROCC|p.R869H|1|0.29|ENSG00000058453|chr1:16948422-16948422|G/A|missense_variant	REV__CROCC|p.R869H|1|0.29|ENSG00000058453|chr1:16948422-16948422|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	599.3181762695312	2	598.817127	1195.6197	0.88528	0.00053012	-0.2723	-0.00016306	0.61298	0.00036706	598.8169815065098	17.629	0.31141	17.458	17.277	17.588	-0.17047					9	5	2	0	0	0	0.69168	1	5879	5879		24.882	0	1	2749800	+		9277	10296	5158	5195	8985	8985					0.029715941838276194
EKDELFLGD	9	Unmodified	_EKDELFLGD_					0	0	0		tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1	tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1	tr|U7T3C3|U7T3C3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00377PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	533.2587280273438	2	533.258579	1064.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.309	1	45.997	45.497	46.497	-0.31237								0	0	0	0.74083	1	17360	17360		17.113	2.2746	1				9278	18591	5159	5196	8986	8986					-0.02706563755782554
EKDKSAKEIDR	11	Unmodified	_EKDKSAKEIDR_					0	0	0			REV__nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	REV__nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	MSMS	HCT116MG_D190212_S1	1	659.8528442382812	2	659.851698	1317.68884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.11	1	17.11	16.61	17.61	0								0	0	0	0.94755	1	5803	5803		7.609	0.50723	1		+		9279	12908	5160	5197	8987	8987					0.04270633412693314
EKEAPRWARGD	11	Unmodified	_EKEAPRWARGD_					0	0	0		NFATC4|p.P25Rfs*69|2|0.34|ENSG00000100968|chr14:24368408-24368408|C/-|frameshift_variant	NFATC4|p.P25Rfs*69|2|0.34|ENSG00000100968|chr14:24368408-24368408|C/-|frameshift_variant	NFATC4|p.P25Rfs*69|2|0.34|ENSG00000100968|chr14:24368408-24368408|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	438.8912658691406	3	438.889825	1313.64765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.327	1	35.327	34.827	35.827	0								0	0	0	0.94145	1	13137	13137		5.8681	0	1				9280	9691	5161	5198	8988	8988					0.0033691716387238557
EKEDTTDN	8	Unmodified	_EKEDTTDN_					0	0	0		ENST00000579496.5_2_18:67614742-67628846:-|nuORF;ENST00000582621.5_2_18:67614739-67614811:-|nuORF	ENST00000579496.5_2_18:67614742-67628846:-|nuORF	ENST00000579496.5_2_18:67614742-67628846:-|nuORF	MSMS	HCT116MG_D190212_S2	2	476.19842529296875	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.61592	1	0.61198	0.11198	1.112	-0.0039395								0	0	0	0.8837	1	203	203		0.6015	0	1				9281	8948	5162	5199	8989	8989					-0.09429177100389552
EKEERRKELKR	11	Unmodified	_EKEERRKELKR_					0	0	0		CWF19L2|p.E92Kfs*45|1|0.28|ENSG00000152404|chr11:107454515-107454515|C/-|frameshift_variant;CWF19L2|p.S97Efs*7|1|0.35|ENSG00000152404|chr11:107454501-107454502|-/T|frameshift_variant;CWF19L2|p.K96Rfs*41|1|0.26|ENSG00000152404|chr11:107454502-107454502|T/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-3|CWF19L2;CWF19L2|p.N326Ifs*19|1|0.46|ENSG00000152404|chr11:107429255-107429255|T/-|frameshift_variant;CWF19L2|p.E467Rfs*17|1|0.29|ENSG00000152404|chr11:107428833-107428834|-/T|frameshift_variant;CWF19L2|p.E467Nfs*22|1|0.26|ENSG00000152404|chr11:107428834-107428834|T/-|frameshift_variant;CWF19L2|p.A661Lfs*32|1|0.08|ENSG00000152404|chr11:107353629-107353629|T/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;CWF19L2|p.L754Wfs*5|1|0.36|ENSG00000152404|chr11:107336655-107336655|A/-|frameshift_variant;ENSG00000152404|ENST00000282251|CWF19L2	CWF19L2|p.E92Kfs*45|1|0.28|ENSG00000152404|chr11:107454515-107454515|C/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MSMS	HCT116MG_D190212_S4	4	500.9573669433594	3	500.958351	1499.85322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.464	1	55.15	54.65	55.65	-0.31379								0	0	0	0.95778	1	20768	20768		2.2527	1.8445	1				9282	9501;620	5163	5200	8990	8990					0.12329070623286498
EKELRKFRKID	11	Unmodified	_EKELRKFRKID_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MSMS	HCT116MG_D190212_S1	1	731.325439453125	2	731.43045	1460.84635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.402	1	21.402	20.902	21.902	0								0	0	0	0.95273	1	7527	7527		4.897	2.1618	1				9283	2464	5164	5201	8991	8991					0.13435757742740861
EKERLRQWYYV	11	Unmodified	_EKERLRQWYYV_					0	0	0			REV__CLMP|p.I169L|1|0.17|ENSG00000166250|chr11:123083731-123083731|T/G|missense_variant	REV__CLMP|p.I169L|1|0.17|ENSG00000166250|chr11:123083731-123083731|T/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	785.0847778320312	2	785.412257	1568.80996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.839	1	45.466	44.966	45.966	-0.37206								0	0	0	0.95636	1	16924	16924		2.9952	0	1		+		9284	10205	5165	5202	8992	8992					0.048308808460433283
EKFHACCFY	9	Unmodified	_EKFHACCFY_					0	0	0		ENSG00000082497|ENST00000367012|SERTAD4	ENSG00000082497|ENST00000367012|SERTAD4	ENSG00000082497|ENST00000367012|SERTAD4	MULTI-MSMS	HCT116MG_D190212_S2	2	575.0693969726562	2	574.238612	1146.46267	0.62959	0.00036153	-0.57674	-0.00033118	0.052852	3.0349E-05	574.2383683791129	35.76	0.30817	35.618	35.489	35.797	-0.14245					10	5	3	0	0	0	0.71345	1	13300	13300		4.3292	0.73274	1	32467000			9285	1422	5166	5203	8993	8993					-0.10470105231729576
EKGKEAVV	8	Unmodified	_EKGKEAVV_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENSG00000124228|ENST00000618172|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MSMS	HCT116MG_D190212_S2	2	430.2476501464844	2	430.247818	858.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.897	1	31.652	31.152	32.152	-0.24519								0	0	0	0.33717	1	11783	11783		52.268	6.5687	1				9286	9444	5167	5204	8994	8994					0.04618096006140604
EKHRIKQLLY	10	Unmodified	_EKHRIKQLLY_					0	0	0		ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	MSMS	HCT116MG_D190212_S1	1	664.3983154296875	2	664.395879	1326.7772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.285	1	54.285	53.785	54.785	0								0	0	0	0.91279	1	20812	20812		13.042	2.243	1				9287	3606	5168	5205	8995	8995					0.12688718513845743
EKIAPIALP	9	Unmodified	_EKIAPIALP_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MSMS	HCT116MG_D190212_S2	2	476.2974853515625	2	476.29731	950.580068	0.30257	0.00014411	1.67	0.00079541	1.9726	0.00093952	476.2978357351534	57.904	0.31391	57.729	57.574	57.887	-0.17494					7	5	2	0	0	0	0.63131	1	22416	22416		9.3831	2.0939	1	5988200	+		9288	13290	5169	5206	8996	8996					0.10280118971036245
EKIAPIALP	9	Unmodified	_EKIAPIALP_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MATCH	HCT116MG_D190212_S1	1		2	476.29731	950.580068	0.10114	4.8172E-05	2.2181	0.0010565	2.3192	0.0011046	476.29828794298305	57.762	0.41479	57.762	57.567	57.982	0	0.016688	9.372E-05	NaN	9.3831	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12758000	+		9289	13290	5169	5206							0.10280118971036245
EKIAPIALP	9	Unmodified	_EKIAPIALP_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	476.29731	950.580068	0.30257	0.00014411	1.67	0.00079541	1.9726	0.00093952	476.2978357351534	57.904	0.31391	57.729	57.574	57.887	-0.17494	-0.016688	-0.00042836	NaN	9.3831	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5988200	+		9290	13290	5169	5206							0.10280118971036245
EKIARIRRQ	9	Unmodified	_EKIARIRRQ_					0	0	0			REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF	REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	585.36474609375	2	585.364913	1168.71527	0.61942	0.00036258	-0.59278	-0.00034699	0.026636	1.5592E-05	585.3641873022681	52.504	0.41127	52.504	52.383	52.794	0					13	7	3	0	0	0	0.71898	1	20095	20095		3.9444	0.3479	1	16530000	+		9291	14379	5170	5207	8997	8997					0.1376641188535359
EKICIKIKH	9	Unmodified	_EKICIKIKH_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MSMS	HCT116MG_D190212_S4	4	371.2276306152344	3	371.226722	1110.65834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.447	1	35.061	34.561	35.561	-0.38606								0	0	0	0.76998	1	12982	12982		0.96228	0	1		+		9292	11200	5171	5208	8998	8998					0.10743228284650286
EKIEKTNND	9	Unmodified	_EKIEKTNND_					0	0	0			REV__tr|U7SMA3|U7SMA3_FUSNUZinc-ribbondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01879PE=4SV=1	REV__tr|U7SMA3|U7SMA3_FUSNUZinc-ribbondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01879PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	545.7734375	2	545.772385	1089.53022	0.49657	0.00027101	1.2591	0.00068718	1.7557	0.00095819	545.7732687096734	19.448	0.31197	19.261	19.129	19.441	-0.18674					13	5	4	0	0	0	0.11498	1	6598	6598		55.235	5.6804	1	12962000	+		9293	17722	5172	5209	8999	8999					-0.010966604955683579
EKIEKTNND	9	Unmodified	_EKIEKTNND_					0	0	0			REV__tr|U7SMA3|U7SMA3_FUSNUZinc-ribbondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01879PE=4SV=1	REV__tr|U7SMA3|U7SMA3_FUSNUZinc-ribbondomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01879PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	545.772385	1089.53022	0.41518	0.00022659	1.6684	0.00091058	2.0836	0.0011372	545.7732456404896	20.005	0.46721	19.63	19.455	19.922	-0.37503	0.18457	7.7125E-05	NaN	55.235	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45768000	+		9294	17722	5172	5209							-0.010966604955683579
EKIKEQTVP	9	Unmodified	_EKIKEQTVP_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	357.87286376953125	3	357.873001	1070.59717	-0.58841	-0.00021058	0.53959	0.00019311	-0.048814	-1.7469E-05	357.87311053850067	18.502	0.3123	18.139	18.008	18.321	-0.36325					15	5	4	0	0	0	0.21258	1	6367	6367		30.703	0	1	62817000			9295	4314	5173	5210	9000	9000					0.06469994786198185
EKIKFPKTPPF	11	Unmodified	_EKIKFPKTPPF_					0	0	0		ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	MSMS	HCT116MG_D190212_S2	2	666.3905639648438	2	666.389731	1330.76491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.595	1	45.5	45	46	-0.094952								0	0	0	0.95731	1	17343	17343		2.4985	1.0166	1				9296	5530	5174	5211	9001	9001					0.11275682050791147
EKIKKLPLLKG	11	Unmodified	_EKIKKLPLLKG_					0	0	0		ENST00000558173.5_1_15:45047145-45048685:+|nuORF;ENSG00000185880|ENST00000329464|TRIM69	ENST00000558173.5_1_15:45047145-45048685:+|nuORF	ENST00000558173.5_1_15:45047145-45048685:+|nuORF	MSMS	HCT116MG_D190212_S3	3	633.9290771484375	2	633.929023	1265.84349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.367	1	45.056	44.556	45.556	-0.31094								0	0	0	0.95772	1	16984	16984		2.2828	1.0894	1				9297	5849	5175	5212	9002	9002					0.22120534355872223
EKIKKRYRKRK	11	Unmodified	_EKIKKRYRKRK_					0	0	0		KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	766.9960327148438	2	766.996626	1531.9787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.028	1	53.729	53.229	54.229	-0.29946								0	0	0	0.95954	1	20463	20463		1.3295	0	1				9298	1080	5176	5213	9003	9003					0.2339882727017084
EKIKKRYRKRK	11	Unmodified	_EKIKKRYRKRK_					0	0	0		KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	766.9951782226562	2	766.996626	1531.9787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.223	1	52.889	52.389	53.389	-0.33473								0	0	0	0.95196	1	19865	19865		5.2969	3.9674	1				9299	1080	5176	5213	9004	9004					0.2339882727017084
EKIKMEQV	8	Unmodified	_EKIKMEQV_					0	0	0			REV__ENSG00000198162|ENST00000356554|MAN1A2	REV__ENSG00000198162|ENST00000356554|MAN1A2	MSMS	HCT116MG_D190212_S3	3	502.2868347167969	2	502.775885	1003.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.405	1	39.104	38.604	39.604	-0.30137								0	0	0	0.65264	1	14627	14627		34.402	8.0604	1		+		9300	14110	5177	5214	9005	9005					0.0355898085130093
EKIKRIKNFK	10	Unmodified	_EKIKRIKNFK_					0	0	0		nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4-5|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1;DZANK1|p.E618Kfs*6|1|0.16|ENSG00000089091|chr20:18390417-18390417|C/-|frameshift_variant	nc|ENSG00000089091|Q9NVP4-2|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	MSMS	HCT116MG_D190212_S2	2	652.4131469726562	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.933	1	47.8	47.3	48.3	-0.13281								0	0	0	0.93466	1	18297	18297		8.1555	2.4237	1				9301	1513	5178	5215	9006	9006					0.17429595410544607
EKILIYELY	9	Unmodified	_EKILIYELY_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	HCT116MG_D190212_S2	2	592.1302490234375	2	592.33409	1182.65363	0.58141	0.00034439	-0.0082663	-4.8964E-06	0.57314	0.00033949	592.3340629512082	49.114	0.15157	48.96	48.834	48.985	-0.15405					4	2	2	0	0	0	0.45867	1	18775	18775		19.257	0	1	80143000			9302	4647	5179	5216	9007	9007					0.06960622622864321
EKIPVRHLYTK	11	Unmodified	_EKIPVRHLYTK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MSMS	HCT116MG_D190212_S1	1	692.4067993164062	2	692.408986	1382.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.248	1	47.248	46.748	47.748	0								0	0	0	0.95772	1	17947	17947		2.2828	0.80087	1				9303	4179	5180	5217	9008	9008					0.12732987685308217
EKIQIKKTIKM	11	Unmodified	_EKIQIKKTIKM_					0	0	0		ENST00000511141.1_1_4:153717696-153717858:-|nuORF	ENST00000511141.1_1_4:153717696-153717858:-|nuORF	ENST00000511141.1_1_4:153717696-153717858:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	453.9519348144531	3	453.951257	1358.83194	0.10829	4.9158E-05	1.358	0.00061646	1.4663	0.00066561	453.95219013943125	54.884	0.51131	54.696	54.457	54.968	-0.18797					22	9	3	0	0	0	0.74191	1	21171	21171		2.2527	1.4078	1	20121000			9304	8500	5181	5218	9009	9009					0.16687969270219583
EKIQQLQRLLE	11	Unmodified	_EKIQQLQRLLE_					0	0	0			REV__RLIM|p.R67Q|1|0.11|ENSG00000131263|chrX:74594359-74594359|C/T|missense_variant	REV__RLIM|p.R67Q|1|0.11|ENSG00000131263|chrX:74594359-74594359|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	699.4091186523438	2	699.409183	1396.80381	0.70232	0.00049121	-0.65351	-0.00045707	0.048816	3.4142E-05	699.4084565802199	51.95	0.93022	51.95	51.194	52.125	0					32	17	3	0	0	0	0.74191	1	19858	19858		0.96228	0.96228	1	63728000	+		9305	17472	5182	5219	9010	9010					0.12128362614521393
EKIRMKVVFDS	11	Unmodified	_EKIRMKVVFDS_					0	0	0			REV__ENSG00000120057|ENST00000266066|SFRP5	REV__ENSG00000120057|ENST00000266066|SFRP5	MSMS	HCT116MG_D190212_S1	1	676.4258422851562	2	676.373755	1350.73296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.793	1	49.793	49.293	50.293	0								0	0	0	0.95273	1	18982	18982		4.897	1.9018	1		+		9306	11684	5183	5220	9011	9011					0.07161946305359379
EKISRDQLLRI	11	Unmodified	_EKISRDQLLRI_					0	0	0		CNKSR2|p.G41R|1|0.31|ENSG00000149970|chrX:21426553-21426553|G/A|missense_variant	CNKSR2|p.G41R|1|0.31|ENSG00000149970|chrX:21426553-21426553|G/A|missense_variant	CNKSR2|p.G41R|1|0.31|ENSG00000149970|chrX:21426553-21426553|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	457.6080322265625	3	457.608659	1369.80415	0.21076	9.6446E-05	-0.26057	-0.00011924	-0.049815	-2.2796E-05	457.6084997882162	54.178	0.66257	54.178	53.924	54.587	0					16	12	2	0	0	0	0.74191	1	20771	20771		2.2527	1.2392	1	18326000			9307	492	5184	5221	9012	9012					0.1340378233435331
EKITEIELRKR	11	Unmodified	_EKITEIELRKR_					0	0	0		CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.2837829589844	3	472.284064	1413.83036	0.27153	0.00012824	-1.1496	-0.00054295	-0.8781	-0.00041471	472.2834692345488	52.721	1.1883	52.534	51.883	53.071	-0.18726					31	22	2	0	0	0	0.74191	1	20434	20434		2.2527	1.0379	1	20372000			9308	595	5185	5222	9013	9013					0.14000051505809097
EKITEIELRKR	11	Unmodified	_EKITEIELRKR_					0	0	0		CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	472.283935546875	3	472.284064	1413.83036	0.16209	7.6553E-05	-0.64049	-0.00030249	-0.4784	-0.00022594	472.2837005051205	54.294	1.253	53.999	53.356	54.609	-0.29587					42	23	3	0	0	0	0.74191	1	20506	20506		1.0136	0.60531	1	4968400			9309	595	5185	5222	9014	9014					0.14000051505809097
EKKERGGAASP	11	Unmodified	_EKKERGGAASP_					0	0	0			REV__ENST00000329099.4_3_17:292771-292912:-|nuORF	REV__ENST00000329099.4_3_17:292771-292912:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	566.7672729492188	2	565.301644	1128.58874	0.32001	0.0001809	0.055191	3.12E-05	0.3752	0.0002121	565.301571647072	21.837	0.26034	21.452	21.271	21.531	-0.38503					12	4	4	0	0	0	0.70377	1	7683	7683		20.415	1.1575	1	59651000	+		9310	14919	5186	5223	9015	9015					0.02958440869565493
EKKKKKKKIFD	11	Unmodified	_EKKKKKKKIFD_					0	0	0			REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	MSMS	HCT116MG_D190212_S2	2	710.453125	2	710.455936	1418.89732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.876	1	49.712	49.212	50.212	-0.16369								0	0	0	0.95636	1	19102	19102		2.9952	1.8019	1		+		9311	15114	5187	5224	9016	9016					0.20462706787589013
EKKKKKKKIFD	11	Unmodified	_EKKKKKKKIFD_					0	0	0			REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	MSMS	HCT116MG_D190212_S3	3	710.4535522460938	2	710.455936	1418.89732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.361	1	50.045	49.545	50.545	-0.31525								0	0	0	0.95636	1	18989	18989		2.9952	1.6657	1		+		9312	15114	5187	5224	9017	9017					0.20462706787589013
EKKKKRTKILF	11	Unmodified	_EKKKKRTKILF_					0	0	0			REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	REV__F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	709.966796875	2	709.963929	1417.9133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.542	1	50.37	49.87	50.87	-0.1719								0	0	0	0.95636	1	19372	19372		2.9952	1.9238	1		+		9313	14143	5188	5225	9018	9018					0.22106413024494032
EKKKKSSKST	10	Unmodified	_EKKKKSSKST_					0	0	0		ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	MULTI-MSMS	HCT116MG_D190212_S3	3	575.842041015625	2	575.843145	1149.67174	0.37132	0.00021382	-0.18004	-0.00010368	0.19127	0.00011014	575.8429259243867	50.048	2.6162	49.732	48.5	51.116	-0.31524					73	49	2	0	0	0	0.87945	1	19078	19078		3.5965	3.5965	1	11216000			9314	6052	5189	5226	9019	9019					0.10288757597550102
EKKKKSSKST	10	Unmodified	_EKKKKSSKST_					0	0	0		ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	MULTI-MSMS	HCT116MG_D190212_S4	4	575.8436279296875	2	575.843145	1149.67174	0.29756	0.00017135	-0.57157	-0.00032913	-0.274	-0.00015778	575.8427013749606	49.962	2.9145	49.603	48.434	51.349	-0.35942					154	60	4	0	0	0	0.87945	1	18870	18870		3.5965	3.5965	1	59084000			9315	6052	5189	5226	9020	9020					0.10288757597550102
EKKKKSSKST	10	Unmodified	_EKKKKSSKST_					0	0	0		ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	575.843145	1149.67174	0.37132	0.00021382	-0.18004	-0.00010368	0.19127	0.00011014	575.8429259243867	50.048	2.6162	49.732	48.5	51.116	-0.31524	0.064973	0.00030154	NaN	3.5965	73	49	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11216000			9316	6052	5189	5226							0.10288757597550102
EKKKKSSKST	10	Unmodified	_EKKKKSSKST_					0	0	0		ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	575.843145	1149.67174	0.29756	0.00017135	-0.57157	-0.00032913	-0.274	-0.00015778	575.8427013749606	49.962	2.9145	49.603	48.434	51.349	-0.35942	-0.064973	-0.00014937	NaN	3.5965	154	60	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59084000			9317	6052	5189	5226							0.10288757597550102
EKKQDTEKK	9	Unmodified	_EKKQDTEKK_					0	0	0			REV__ENST00000471482.5_1_2:172544095-172549436:+|nuORF	REV__ENST00000471482.5_1_2:172544095-172549436:+|nuORF	MSMS	HCT116MG_D190212_S2	2	567.3137817382812	2	567.311677	1132.6088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.791	1	21.406	20.906	21.906	-0.38503								0	0	0	0.59795	1	7687	7687		24.021	3.5669	1		+		9318	10425	5190	5227	9021	9021					0.04780191809504686
EKKQERKKRRV	11	Unmodified	_EKKQERKKRRV_					0	0	0			REV__PHF12|p.N253Mfs*9|1|0.47|ENSG00000109118|chr17:28921766-28921766|T/-|frameshift_variant	REV__PHF12|p.N253Mfs*9|1|0.47|ENSG00000109118|chr17:28921766-28921766|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	371.98431396484375	4	371.983758	1483.90593	-0.10647	-3.9605E-05	1.1718	0.0004359	1.0654	0.00039629	371.98437000595897	22.298	0.20865	22.298	22.167	22.376	0					7	3	3	0	0	0	0.36629	1	7917	7917		0.073264	0	1	4197600	+		9319	11365	5191	5228	9022	9022					0.18333073476765094
EKKRDKKLIEY	11	Unmodified	_EKKRDKKLIEY_					0	0	0			REV__tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	REV__tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	725.4266357421875	2	725.424833	1448.83511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.059	1	41.683	41.183	42.183	-0.376								0	0	0	0.95581	1	15444	15444		3.2813	1.6287	1		+		9320	17892	5192	5229	9023	9023					0.12864935648599385
EKKRRRFRLSI	11	Unmodified	_EKKRRRFRLSI_					0	0	0			REV__PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	REV__PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	744.9661254882812	2	744.965326	1487.9161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.799	1	23.799	23.299	24.299	0								0	0	0	0.95954	1	8492	8492		1.3295	1.0225	1		+		9321	11188	5193	5230	9024	9024					0.19165681202025553
EKLAAEAMY	9	Unmodified	_EKLAAEAMY_					0	0	0			REV__tr|U7T5S3|U7T5S3_FUSNUPTSsystem,fructose-specificIICcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00064PE=4SV=1	REV__tr|U7T5S3|U7T5S3_FUSNUPTSsystem,fructose-specificIICcomponentOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00064PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	513.2542114257812	2	513.252243	1024.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.304	1	35.918	35.418	36.418	-0.38558								0	0	0	0.76603	1	13280	13280		14.838	3.198	1		+		9322	17989	5194	5231	9025	9025					-0.021332984196760663
EKLAKLLRP	9	Unmodified	_EKLAKLLRP_					0	0	0			REV__ANKRD13C|p.R212Q|1|0.14|ENSG00000118454|chr1:70315509-70315509|C/T|missense_variant	REV__ANKRD13C|p.R212Q|1|0.14|ENSG00000118454|chr1:70315509-70315509|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	534.7352905273438	2	534.350409	1066.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.629	1	41.326	40.826	41.826	-0.30257								0	0	0	0.76902	1	15485	15485		4.3292	0.38484	1		+		9323	9940	5195	5232	9026	9026					0.1555887453635023
EKLALPNIK	9	Unmodified	_EKLALPNIK_					0	0	0			REV__APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	REV__APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	513.3216552734375	2	513.321317	1024.62808	0.28973	0.00014872	1.2707	0.00065227	1.5604	0.00080099	513.3217439955602	61.424	1.141	61.424	61.055	62.196	0					25	21	2	0	0	0	0.67781	1	23695	23695		6.7232	1.9672	1	8423000	+		9324	9964	5196	5233	9027	9027					0.11675192891084407
EKLDEPRLY	9	Unmodified	_EKLDEPRLY_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	HCT116MG_D190212_S2	2	581.703125	2	581.808771	1161.60299	0.54922	0.00031954	0.12194	7.0948E-05	0.67117	0.00039049	581.8087266731584	57.563	0.20653	57.388	57.263	57.469	-0.17494					7	3	3	0	0	0	0.26328	1	22199	22199		1.8442	1.8442	1	9464700	+		9325	12449	5197	5234	9028	9028					0.028650932978507626
EKLEKENSN	9	Unmodified	_EKLEKENSN_					0	0	0		tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	tr|U7T3H1|U7T3H1_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00276PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	545.7732543945312	2	545.772385	1089.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.418	1	19.418	18.918	19.918	0								0	0	0	0.11662	1	6733	6733		53.404	1.9888	1				9326	18598	5198	5235	9029	9029					-0.010966604955683579
EKLEKKRIMK	10	Unmodified	_EKLEKKRIMK_					0	0	0		BAG4|p.G456Rfs*70|1|0.53|ENSG00000156735|chr8:38210476-38210477|-/A|frameshift_variant	BAG4|p.G456Rfs*70|1|0.53|ENSG00000156735|chr8:38210476-38210477|-/A|frameshift_variant	BAG4|p.G456Rfs*70|1|0.53|ENSG00000156735|chr8:38210476-38210477|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	651.686767578125	2	651.89994	1301.78533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.628	1	50.456	49.956	50.956	-0.1719								0	0	0	0.95776	1	19406	19406		2.9952	0.26005	1				9327	249	5199	5236	9030	9030					0.14650529438949889
EKLIRSAPLP	10	Unmodified	_EKLIRSAPLP_					0	0	0			REV__SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant	REV__SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	562.3436279296875	2	562.345323	1122.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.423	1	44.049	43.549	44.549	-0.37373								0	0	0	0.94107	1	16365	16365		6.7232	0.51738	1		+		9328	13975	5200	5237	9031	9031					0.11966266811123205
EKLKEEKRKR	10	Unmodified	_EKLKEEKRKR_					0	0	0			REV__BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant	REV__BAZ1A|p.M682*|1|0.4|ENSG00000198604|chr14:34783186-34783186|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	672.409423828125	2	672.409518	1342.80448	0.65236	0.00043865	-0.49749	-0.00033452	0.15487	0.00010413	672.4090634204291	49.551	0.36153	49.551	49.389	49.75	0					14	6	3	0	0	0	0.88886	1	18897	18897		2.7352	1.5419	1	29414000	+		9329	10032	5201	5238	9032	9032					0.14679202054185225
EKLKKAREE	9	Unmodified	_EKLKKAREE_					0	0	0		nc|ENSG00000169372|P78560-2|CRADD;ENST00000549615.5_1_12:94071236-94184481:+|nuORF;ENSG00000169372|ENST00000332896|CRADD	nc|ENSG00000169372|P78560-2|CRADD	nc|ENSG00000169372|P78560-2|CRADD	MULTI-SECPEP	HCT116MG_D190212_S1	1	565.3624877929688	2	565.830037	1129.64552	0.31594	0.00017877	0.29031	0.00016427	0.60625	0.00034304	565.8301737557356	47.626	0.42729	47.626	47.269	47.696	0					13	8	2	0	0	0	0.26577	1	18128	18128		1.3295	0	1	7301200			9330	5067	5202	5239	9033	9033					0.0858848842608495
EKLKRETPWKI	11	Unmodified	_EKLKRETPWKI_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MSMS	HCT116MG_D190212_S1	1	714.4201049804688	2	714.422094	1426.82963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.272	1	53.272	52.772	53.772	0								0	0	0	0.96003	1	20398	20398		1.0715	0.10919	1				9331	1302	5203	5240	9034	9034					0.13329256856786742
EKLKYIKKY	9	Unmodified	_EKLKYIKKY_					0	0	0		ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant	ACO1|p.P659Lfs*4|1|0.24|ENSG00000122729|chr9:32434574-32434574|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	606.3695678710938	2	606.871174	1211.72779	0.5737	0.00034816	0.0031454	1.9089E-06	0.57685	0.00035007	606.8711496581499	55.07	0.25472	55.07	54.892	55.146	0					6	4	2	0	0	0	0.26783	1	21163	21163		3.9444	0.3479	1	23845000			9332	25	5204	5241	9035	9035					0.13040010505051214
EKLLERTRAR	10	Unmodified	_EKLLERTRAR_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.R70Tfs*4|1|0.21|ENSG00000011426|chr7:36399106-36399107|-/A|frameshift_variant;ANLN|p.K85Lfs*45|1|0.05|ENSG00000011426|chr7:36399157-36399158|-/CTTGAGGG|frameshift_variant;ANLN|p.T144Hfs*18|1|0.38|ENSG00000011426|chr7:36399333-36399333|A/-|frameshift_variant	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MSMS	HCT116MG_D190212_S4	4	636.3793334960938	2	636.38076	1270.74697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.568	1	49.206	48.706	49.706	-0.36213								0	0	0	0.94551	1	18390	18390		5.7319	0.43497	1				9333	894	5205	5242	9036	9036					0.12242359848642081
EKLLKVSSKY	10	Unmodified	_EKLLKVSSKY_					0	0	0			REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	597.8575439453125	2	597.858264	1193.70197	0.59325	0.00035468	-2.1024	-0.0012569	-1.5091	-0.00090223	597.8571749634579	52.44	1.0287	52.44	52.073	53.102	0					27	19	2	0	0	0	0.87059	1	20019	20019		5.7319	0.50118	1	21540000	+		9334	17814	5206	5243	9037	9037					0.11287116262769814
EKLLKVSSKY	10	Unmodified	_EKLLKVSSKY_					0	0	0			REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	597.8562622070312	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.945	1	52.945	52.445	53.445	0								0	0	0	0.94551	1	20264	20264		5.7319	0	1		+		9335	17814	5206	5243	9038	9038					0.11287116262769814
EKLLKVSSKY	10	Unmodified	_EKLLKVSSKY_					0	0	0			REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	597.8562622070312	2	597.858264	1193.70197	0.59325	0.00035468	-2.1024	-0.0012569	-1.5091	-0.00090223	597.8571749634579	52.44	1.0287	52.44	52.073	53.102	0					27	19	2	0	0	0	0.31063	1	20264	20264		5.7319	0.43497	1	21540000	+		9336	17814	5206	5243	9039	9039					0.11287116262769814
EKLNGRRIFA	10	Unmodified	_EKLNGRRIFA_					0	0	0			REV__nc|ENSG00000171817|Q8NDQ6-2|ZNF540	REV__nc|ENSG00000171817|Q8NDQ6-2|ZNF540	MSMS	HCT116MG_D190212_S2	2	602.3140258789062	2	602.351471	1202.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.647	1	27.305	26.805	27.805	-0.34201								0	0	0	0.90291	1	10051	10051		15.248	0.41021	1		+		9337	13361	5207	5244	9040	9040					0.09515303274179132
EKLQFHYF	8	Unmodified	_EKLQFHYF_					0	0	0			REV__CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant	REV__CDH5|p.T612Sfs*143|1|0.11|ENSG00000179776|chr16:66401013-66401014|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	371.10107421875	3	371.190553	1110.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.326	1	26.177	25.677	26.677	-0.14924								0	0	0	0.8837	1	9440	9440		5.7319	1.5423	1		+		9338	10137	5208	5245	9041	9041					-0.0010223969416074397
EKLRQKLQRNA	11	Unmodified	_EKLRQKLQRNA_					0	0	0		LRRC8E|p.P454Rfs*33|1|0.35|ENSG00000171017|chr19:7899878-7899878|C/-|frameshift_variant;ENSG00000171017|ENST00000306708|LRRC8E	LRRC8E|p.P454Rfs*33|1|0.35|ENSG00000171017|chr19:7899878-7899878|C/-|frameshift_variant	LRRC8E|p.P454Rfs*33|1|0.35|ENSG00000171017|chr19:7899878-7899878|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	692.4151611328125	2	692.412592	1382.81063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.913	1	56.913	56.413	57.413	0								0	0	0	0.95686	1	21890	21890		2.7352	0.23671	1				9339	5172	5209	5246	9042	9042					0.13453720285747295
EKLRRLMMPKL	11	Unmodified	_EKLRRLMMPKL_					0	0	0			REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	707.9219970703125	2	707.922892	1413.83123	0.57866	0.00040965	-1.325	-0.00093802	-0.74637	-0.00052837	707.9216545639649	50.91	0.25856	50.91	50.781	51.04	0					7	4	2	0	0	0	0.74191	1	19476	19476		1.1933	0.12188	1	8975700	+		9340	10173;10174	5210	5247	9043	9043					0.14086851349543394
EKLRVSSR	8	Unmodified	_EKLRVSSR_					0	0	0		ENST00000252329.3_1_7:1610328-1610358:-|nuORF	ENST00000252329.3_1_7:1610328-1610358:-|nuORF	ENST00000252329.3_1_7:1610328-1610358:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	487.79071044921875	2	487.790715	973.566878	0.25155	0.0001227	0.33848	0.00016511	0.59003	0.00028781	487.7907136626293	45.829	1.3195	45.518	44.53	45.849	-0.31094					50	27	3	0	0	0	0.85571	1	17203	17203		4.3292	0.38484	1	13727000			9341	6802	5211	5248	9044	9044					0.07903680911658739
EKLSKSRINRL	11	Unmodified	_EKLSKSRINRL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	HCT116MG_D190212_S1	1	448.7814636230469	3	448.60877	1342.80448	-0.13768	-6.1763E-05	-0.46966	-0.00021069	-0.60733	-0.00027246	448.6084904044944	50.548	0.46429	50.548	50.368	50.833	0					15	8	2	0	0	0	0.36622	1	19277	19277		1.1098	1.1098	1	57302000	+		9342	12015	5212	5249	9045	9045					0.146792020542307
EKLSKSRINRL	11	Unmodified	_EKLSKSRINRL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	HCT116MG_D190212_S1	1	448.76031494140625	3	448.60877	1342.80448	-0.072634	-3.2584E-05	-0.74103	-0.00033243	-0.81367	-0.00036502	448.6082709235179	50.085	0.41265	50.085	49.853	50.266	0					11	7	2	0	0	0	0.36629	1	19169	19169		0.40827	0.40827	1	16818000	+		9343	12015	5212	5249	9046	9046					0.146792020542307
EKLTEPPP	8	Unmodified	_EKLTEPPP_					0	0	0			REV__nc|ENSG00000006283|O43497-28|CACNA1G	REV__nc|ENSG00000006283|O43497-28|CACNA1G	MULTI-MSMS	HCT116MG_D190212_S2	2	455.7476501464844	2	455.74765	909.480748	0.1264	5.7605E-05	0.3043	0.00013868	0.43069	0.00019629	455.747634235881	19.231	0.26031	18.862	18.732	18.992	-0.3695					9	4	3	0	0	0	0.15965	1	6681	6681		81.613	0	1	15001000	+		9344	17064	5213	5250	9047	9047					0.02238676286287955
EKLTLWLWLQR	11	Unmodified	_EKLTLWLWLQR_					0	0	0		ENST00000552270.1_1_12:105464468-105467659:-|nuORF	ENST00000552270.1_1_12:105464468-105467659:-|nuORF	ENST00000552270.1_1_12:105464468-105467659:-|nuORF	MSMS	HCT116MG_D190212_S1	1	743.435546875	2	743.432461	1484.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.709	1	52.709	52.209	53.209	0								0	0	0	0.94942	1	20168	20168		6.6304	3.8952	1				9345	8763	5214	5251	9048	9048					0.12733847236449947
EKLVRREA	8	Unmodified	_EKLVRREA_					0	0	0			REV__ENSG00000221978|ENST00000400809|CCNL2	REV__ENSG00000221978|ENST00000400809|CCNL2	MULTI-MSMS	HCT116MG_D190212_S1	1	1000.590087890625	1	1000.5898	999.582528	0.54777	0.0005481	0.65149	0.00065187	1.1993	0.0012	1000.5901362387816	50.394	0.36086	50.394	50.162	50.523	0					15	6	3	0	0	0	0.85571	1	19193	19193		4.3292	0.73274	1	202380000	+		9346	14294	5215	5252	9049	9049					0.08271967428697735
EKLVRREA	8	Unmodified	_EKLVRREA_					0	0	0			REV__ENSG00000221978|ENST00000400809|CCNL2	REV__ENSG00000221978|ENST00000400809|CCNL2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1000.5898	999.582528	0.54777	0.0005481	0.65149	0.00065187	1.1993	0.0012	1000.5901362387816	50.394	0.36086	50.394	50.162	50.523	0	0	0	NaN	4.3292	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202380000	+		9347	14294	5215	5252							0.08271967428697735
EKLVYIRKTY	10	Unmodified	_EKLVYIRKTY_					0	0	0		tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	tr|U7SU57|U7SU57_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01029PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	657.385009765625	2	656.884813	1311.75507	0.73344	0.00048179	0.21356	0.00014029	0.947	0.00062207	657.38549434297	52.36	1.9583	52.36	51.4	53.359	0					102	37	5	0	0	0	0.88823	1	20406	20406		1.4819	0.15237	1	109310000			9348	18465	5216	5253	9050	9050					0.11166494045414765
EKLYKIYY	8	Unmodified	_EKLYKIYY_					0	0	0			REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	REV__tr|U7SZM4|U7SZM4_FUSNUMetal-dependentcarboxypeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00798PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	560.3078002929688	2	560.307875	1118.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.866	1	39.793	39.293	40.293	-0.072838								0	0	0	0.79325	1	15018	15018		23.148	3.7865	1		+		9349	17881	5217	5254	9051	9051					0.046640842798979065
EKMYKYLAV	9	Unmodified	_EKMYKYLAV_					0	0	0			REV__ENSG00000150347|ENST00000279873|ARID5B	REV__ENSG00000150347|ENST00000279873|ARID5B	MULTI-MSMS	HCT116MG_D190212_S2	2	572.8084716796875	2	572.807185	1143.59982	0.53363	0.00030567	2.6198	0.0015006	3.1534	0.0018063	572.8084571981908	32.874	0.15318	32.663	32.586	32.739	-0.21135					4	2	2	0	0	0	0.50572	1	12201	12201		22.736	7.898	1	45785000	+		9350	12581	5218	5255	9052	9052					0.033761269194883425
EKPFIRLLQ	9	Unmodified	_EKPFIRLLQ_					0	0	0			REV__ENSG00000147416|ENST00000276390|ATP6V1B2	REV__ENSG00000147416|ENST00000276390|ATP6V1B2	MSMS	HCT116MG_D190212_S2	2	572.330322265625	2	572.347866	1142.68118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.264	1	34.088	33.588	34.588	-0.17512								0	0	0	0.76849	1	12742	12742		6.2058	0	1		+		9351	12513	5219	5256	9053	9053					0.11554570673752096
EKPGWTRSWLP	11	Unmodified	_EKPGWTRSWLP_					0	0	0		ENST00000493772.5_1_20:62372637-62374340:+|nuORF	ENST00000493772.5_1_20:62372637-62374340:+|nuORF	ENST00000493772.5_1_20:62372637-62374340:+|nuORF	MSMS	HCT116MG_D190212_S3	3	678.8541870117188	2	678.856586	1355.69862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.218	1	42.914	42.414	43.414	-0.30472								0	0	0	0.9465	1	16120	16120		8.1555	2.4237	1				9352	8364	5220	5257	9054	9054					0.03499866208767344
EKQDGTVF	8	Unmodified	_EKQDGTVF_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22;nc|ENSG00000134242|Q9Y2R2-3|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	HCT116MG_D190212_S2	2	462.2172546386719	2	462.227082	922.439611	0.18773	8.6773E-05	-0.37603	-0.00017381	-0.1883	-8.7037E-05	462.22697070314035	29.874	0.25847	29.573	29.34	29.599	-0.30095					7	4	2	0	0	0	0.60054	1	10915	10915		32.305	5.9642	1	24037000			9353	3268	5221	5258	9055	9055					-0.024710847531878244
EKQMKNQE	8	Unmodified	_EKQMKNQE_					0	0	0			REV__CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant	REV__CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	517.2709350585938	2	517.750398	1033.48624	0.29065	0.00015048	0.18942	9.807E-05	0.48007	0.00024855	517.7506182626373	16.974	0.15576	16.626	16.511	16.667	-0.34725					4	2	2	0	0	0	0.25507	1	5716	5716		37.974	13.953	1	3945500	+		9354	10151	5222	5259	9056	9056					-0.02915968193565277
EKREIIENA	9	Unmodified	_EKREIIENA_					0	0	0		nc|ENSG00000073150|Q96RD6-2|PANX2;PANX2|p.G587Afs*17|1|0.26|ENSG00000073150|chr22:50178998-50178998|G/-|frameshift_variant;nc|ENSG00000073150|Q96RD6-1|PANX2;ENSG00000073150|ENST00000395842|PANX2	nc|ENSG00000073150|Q96RD6-2|PANX2	nc|ENSG00000073150|Q96RD6-2|PANX2	MSMS	HCT116MG_D190212_S1	1	551.298828125	2	551.29857	1100.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.462	1	24.462	23.962	24.962	0								0	0	0	0.76578	1	8758	8758		11.495	0	1				9355	1283	5223	5260	9057	9057					0.03631922638055585
EKRKPIRVLSL	11	Unmodified	_EKRKPIRVLSL_					0	0	0		ENST00000474887.5_1_2:25458684-25467188:-|nuORF;nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;ENSG00000119772|ENST00000321117|DNMT3A	ENST00000474887.5_1_2:25458684-25467188:-|nuORF	ENST00000474887.5_1_2:25458684-25467188:-|nuORF	MSMS	HCT116MG_D190212_S3	3	669.9356689453125	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.476	1	50.162	49.662	50.662	-0.31381								0	0	0	0.95731	1	19034	19034		2.4985	1.169	1				9356	2666	5224	5261	9058	9058					0.19529266956328684
EKRLLFKDRHF	11	Unmodified	_EKRLLFKDRHF_					0	0	0		ENSG00000153930|ENST00000682825|ANKFN1	ENSG00000153930|ENST00000682825|ANKFN1	ENSG00000153930|ENST00000682825|ANKFN1	MSMS	HCT116MG_D190212_S3	3	496.5797424316406	3	496.952649	1487.83612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.558	1	51.247	50.747	51.747	-0.31166								0	0	0	0.95976	1	19470	19470		1.2148	0.10508	1				9357	4199	5225	5262	9059	9059					0.11171194808162
EKRLRRLERRR	11	Unmodified	_EKRLRRLERRR_					0	0	0		CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H;CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	784.1514892578125	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.555	1	47.555	47.055	48.055	0								0	0	0	0.9598	1	18072	18072		1.1933	1.1933	1				9358	307	5226	5263	9060	9060					0.2047038921082276
EKRLRRLERRR	11	Unmodified	_EKRLRRLERRR_					0	0	0		CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H;CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	784.4908447265625	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.096	1	52.793	52.293	53.293	-0.30305								0	0	0	0.9598	1	20088	20088		1.1933	1.1933	1				9359	307	5226	5263	9061	9061					0.2047038921082276
EKRLRRLERRR	11	Unmodified	_EKRLRRLERRR_					0	0	0		CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H;CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	784.4908447265625	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.35	1	52.005	51.505	52.505	-0.34538								0	0	0	0.9598	1	19513	19513		1.1933	0	1				9360	307	5226	5263	9062	9062					0.2047038921082276
EKRLRRLERRR	11	Unmodified	_EKRLRRLERRR_					0	0	0		CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H;CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	784.49072265625	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.058	1	52.723	52.223	53.223	-0.33473								0	0	0	0.9598	1	19798	19798		1.1933	1.1933	1				9361	307	5226	5263	9063	9063					0.2047038921082276
EKRRRHRREK	10	Unmodified	_EKRRRHRREK_					0	0	0			REV__CACNA1A|p.T1355Pfs*16|1|0.3|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	REV__CACNA1A|p.T1355Pfs*16|1|0.3|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	725.93310546875	2	725.932348	1449.85014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.501	1	49.34	48.84	49.84	-0.16022								0	0	0	0.95892	1	18947	18947		2.7352	1.2533	1		+		9362	10075	5227	5264	9064	9064					0.1432128507979087
EKRRRRKWKWM	11	Unmodified	_EKRRRRKWKWM_					0	0	0		PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	830.476806640625	2	830.478077	1658.9416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.083	1	54.791	54.291	55.291	-0.2918								0	0	0	0.9598	1	20887	20887		1.1933	1.1933	1				9363	9788	5228	5265	9065	9065					0.1384883245277706
EKSLTLDY	8	Unmodified	_EKSLTLDY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S2	2	968.4961547851562	1	968.493504	967.486227	0.92452	0.00089539	-0.0075506	-7.3127E-06	0.91697	0.00088808	968.4933813981232	42.681	0.51751	42.611	42.377	42.895	-0.069984					17	9	3	0	0	0	0.14283	1	16257	16257		85.272	10.849	1	106350000	+		9364	12706	5229	5266	9066	9066					0.0011835507808655166
EKTKHVELQAY	11	Unmodified	_EKTKHVELQAY_					0	0	0			REV__GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant	REV__GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	673.3575439453125	2	673.359159	1344.70376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.565	1	26.565	26.065	27.065	0								0	0	0	0.95113	1	9604	9604		5.7319	0.43497	1		+		9365	14463	5230	5267	9067	9067					0.04520125280737375
EKTKMRKSKRK	11	Unmodified	_EKTKMRKSKRK_					0	0	0		nc|ENSG00000180891|Q9NWM3-2|CUEDC1;ENSG00000180891|ENST00000577830|CUEDC1;ENST00000584746.5_1_17:55944697-55948725:-|nuORF	nc|ENSG00000180891|Q9NWM3-2|CUEDC1	nc|ENSG00000180891|Q9NWM3-2|CUEDC1	MSMS	HCT116MG_D190212_S1	1	710.4337768554688	2	710.43247	1418.85039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.497	1	52.497	51.997	52.997	0								0	0	0	0.95686	1	20081	20081		2.7352	0	1				9366	5614	5231	5268	9068	9068					0.15771523964804146
EKTKTKSKLD	10	Unmodified	_EKTKTKSKLD_					0	0	0			REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	MULTI-MSMS	HCT116MG_D190212_S4	4	589.0547485351562	2	589.342978	1176.6714	0.56814	0.00033483	-0.09928	-5.851E-05	0.46886	0.00027632	589.3428235557675	50.518	2.0579	50.159	49.551	51.609	-0.35878					98	39	3	0	0	0	0.86862	1	18548	18548		6.2058	6.2058	1	28864000	+		9367	13938	5232	5269	9069	9069					0.09013337877695449
EKVFEEEIVID	11	Unmodified	_EKVFEEEIVID_					0	0	0		nc|ENSG00000172426|Q9H1X1-2|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9	MULTI-SECPEP	HCT116MG_D190212_S1	1	451.32745361328125	3	450.566014	1348.67621	-0.034256	-1.5435E-05	0.8704	0.00039217	0.83614	0.00037674	450.56618327680536	32.024	0.1566	32.024	31.909	32.066	0					4	2	2	0	0	0	0.36423	1	11801	11801		0.32927	0	1	3227700			9368	9549	5233	5270	9070	9070					0.015821772298068026
EKVFEEEIVID	11	Unmodified	_EKVFEEEIVID_					0	0	0		nc|ENSG00000172426|Q9H1X1-2|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9	MULTI-MATCH	HCT116MG_D190212_S2	2		3	450.566014	1348.67621	0.12168	5.4823E-05	0.70984	0.00031983	0.83152	0.00037465	450.5661389392537	32.27	0.20794	32.04	31.89	32.098	-0.23009	0.0079553	-8.7934E-05	NaN	0.32927	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9326800			9369	9549	5233	5270							0.015821772298068026
EKVKQIKP	8	Unmodified	_EKVKQIKP_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3-4|MACF1	REV__nc|ENSG00000127603|Q9UPN3-4|MACF1	MSMS	HCT116MG_D190212_S2	2	485.30950927734375	2	485.30821	968.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.537	1	38.452	37.952	38.952	-0.084618								0	0	0	0.76512	1	14478	14478		25.399	4.9457	1		+		9370	11860	5234	5271	9071	9071					0.11630923719610564
EKVRLRLR	8	Unmodified	_EKVRLRLR_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1;ENST00000519659.5_1_5:167833263-167837001:+|nuORF	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MSMS	HCT116MG_D190212_S2	2	357.2357177734375	3	357.236608	1068.688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.534	1	46.422	45.922	46.922	-0.11121								0	0	0	0.8837	1	17727	17727		5.7319	0	1				9371	2400	5235	5272	9072	9072					0.15639928344967302
EKYFSSNVY	9	Unmodified	_EKYFSSNVY_					0	0	0			REV__ENSG00000118777|ENST00000237612|ABCG2	REV__ENSG00000118777|ENST00000237612|ABCG2	MULTI-MSMS	HCT116MG_D190212_S1	1	568.7664794921875	2	568.766571	1135.51859	0.52084	0.00029623	-0.59764	-0.00033992	-0.076806	-4.3685E-05	568.766183129122	29.295	0.3128	29.295	29.164	29.477	0					8	5	2	0	0	0	0.45867	1	10735	10735		19.257	0	1	11401000	+		9372	11642	5236	5273	9073	9073					-0.04374857518905628
ELAAMQKKL	9	Unmodified	_ELAAMQKKL_					0	0	0		ENSG00000143549|ENST00000651641|TPM3	ENSG00000143549|ENST00000651641|TPM3	ENSG00000143549|ENST00000651641|TPM3	MSMS	HCT116MG_D190212_S4	4	516.3016357421875	2	516.299527	1030.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.157	1	43.784	43.284	44.284	-0.37373								0	0	0	0.76669	1	16258	16258		12.532	0.89125	1				9373	3818	5237	5274	9074	9074					0.07043260122304673
ELACAGHLP	9	Unmodified	_ELACAGHLP_					0	0	0		KATNBL1|p.S145Lfs*19|3|0.3|ENSG00000134152|chr15:34152795-34152795|A/-|frameshift_variant;ENST00000560671.5_1_15:34440831-34455877:-|nuORF;ENST00000540594.5_1_15:34439399-34502250:-|nuORF;ENSG00000134152|ENST00000256544|KATNBL1	KATNBL1|p.S145Lfs*19|3|0.3|ENSG00000134152|chr15:34152795-34152795|A/-|frameshift_variant	KATNBL1|p.S145Lfs*19|3|0.3|ENSG00000134152|chr15:34152795-34152795|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	455.726318359375	2	455.726195	909.437837	0.37357	0.00017024	0.57861	0.00026369	0.95218	0.00043393	455.72637141391533	45.12	0.26068	44.811	44.68	44.941	-0.30927					6	4	2	0	0	0	0.59184	1	16924	16924		11.64	1.4569	1	2413900			9374	3265	5238	5275	9075	9075					-0.020504170427898316
ELACAGHLP	9	Unmodified	_ELACAGHLP_					0	0	0		KATNBL1|p.S145Lfs*19|3|0.3|ENSG00000134152|chr15:34152795-34152795|A/-|frameshift_variant;ENST00000560671.5_1_15:34440831-34455877:-|nuORF;ENST00000540594.5_1_15:34439399-34502250:-|nuORF;ENSG00000134152|ENST00000256544|KATNBL1	KATNBL1|p.S145Lfs*19|3|0.3|ENSG00000134152|chr15:34152795-34152795|A/-|frameshift_variant	KATNBL1|p.S145Lfs*19|3|0.3|ENSG00000134152|chr15:34152795-34152795|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	455.726195	909.437837	0.32003	0.00014585	0.825	0.00037597	1.145	0.00052182	455.726852354658	44.905	0.15524	44.82	44.691	44.846	-0.084797	0.004911	0.00017855	NaN	11.64	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4584600			9375	3265	5238	5275							-0.020504170427898316
ELAEHRSYP	9	Unmodified	_ELAEHRSYP_					0	0	0		nc|ENSG00000156011|Q9NYI0-3|PSD3;PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;ENST00000518315.5_1_8:18393255-18632402:-|nuORF	nc|ENSG00000156011|Q9NYI0-3|PSD3	nc|ENSG00000156011|Q9NYI0-3|PSD3	MULTI-MSMS	HCT116MG_D190212_S4	4	551.7715454101562	2	551.269813	1100.52507	0.50281	0.00027718	0.8161	0.00044989	1.3189	0.00072708	551.7717245246333	36.95	0.25578	36.565	36.383	36.639	-0.38486					6	4	2	0	0	0	0.55223	1	13569	13569		13.906	3.8321	1	3779200			9376	4271	5239	5276	9076	9076					-0.021169195675156516
ELAEINLLTHH	11	Unmodified	_ELAEINLLTHH_					0	0	0		ENSG00000138813|ENST00000326581|C4orf17	ENSG00000138813|ENST00000326581|C4orf17	ENSG00000138813|ENST00000326581|C4orf17	MSMS	HCT116MG_D190212_S2	2	645.345458984375	2	645.346052	1288.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.146	1	32.934	32.434	33.434	-0.21135								0	0	0	0.82946	1	12288	12288		29.082	0	1				9377	3591	5240	5277	9077	9077					0.04475856109229426
ELAELKTRRR	10	Unmodified	_ELAELKTRRR_					0	0	0		ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MSMS	HCT116MG_D190212_S4	4	636.3804931640625	2	636.38076	1270.74697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.317	1	37.934	37.434	38.434	-0.38283								0	0	0	0.95351	1	14038	14038		3.9444	0.3479	1				9378	4658	5241	5278	9078	9078					0.12242359848664819
ELAGACTLHL	10	Unmodified	_ELAGACTLHL_					0	0	0		ENST00000487682.5_1_1:156909888-156915005:-|nuORF	ENST00000487682.5_1_1:156909888-156915005:-|nuORF	ENST00000487682.5_1_1:156909888-156915005:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	514.2220458984375	2	514.265684	1026.51682	0.19925	0.00010247	0.22186	0.00011409	0.4211	0.00021656	514.2657182211404	42.11	0.25885	42.042	41.913	42.172	-0.068199					8	4	2	0	0	0	0.30526	1	15891	15891		10.074	1.4806	1	35983000			9379	8307	5242	5279	9079	9079					0.004618101914957151
ELAGPHQILGP	11	Unmodified	_ELAGPHQILGP_					0	0	0		ENST00000521401.1_1_7:27150342-27166549:-|nuORF	ENST00000521401.1_1_7:27150342-27166549:-|nuORF	ENST00000521401.1_1_7:27150342-27166549:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	377.8765563964844	3	377.876746	1130.60841	-0.17552	-6.6325E-05	-0.035575	-1.3443E-05	-0.21109	-7.9767E-05	377.876564113016	27.867	0.20539	27.525	27.449	27.655	-0.34201					5	3	2	0	0	0	0.70073	1	10167	10167		12.856	1.3612	1	19104000			9380	8556	5243	5280	9080	9080					0.04832816880343671
ELAKQFVSL	9	Unmodified	_ELAKQFVSL_					0	0	0			REV__nc|ENSG00000165917|Q13702-2|RAPSN	REV__nc|ENSG00000165917|Q13702-2|RAPSN	MULTI-SECPEP	HCT116MG_D190212_S2	2	517.259033203125	2	517.797675	1033.5808	0.32266	0.00016707	-0.40918	-0.00021187	-0.086514	-4.4797E-05	517.7973310698135	45.219	0.31149	45.127	44.996	45.307	-0.092472					8	5	2	0	0	0	0.23771	1	17139	17139		10.074	0.6908	1	14841000	+		9381	13082	5244	5281	9081	9081					0.06534913620112093
ELALKKKI	8	Unmodified	_ELALKKKI_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	HCT116MG_D190212_S3	3	471.2740783691406	2	471.820953	941.627353	0.037799	1.7834E-05	-0.19372	-9.1401E-05	-0.15592	-7.3566E-05	471.82081558209654	34.588	0.20736	34.291	34.181	34.388	-0.29707					5	3	2	0	0	0	0.31507	1	12704	12704		2.3027	0	1	2321500			9382	6591	5245	5282	9082	9082					0.15420398242031297
ELAPDQGTEE	10	Unmodified	_ELAPDQGTEE_					0	0	0			REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant	REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	544.7399291992188	2	544.740751	1087.46695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.273	1	34.974	34.474	35.474	-0.29922								0	0	0	0.92607	1	13014	13014		10.074	0.6908	1		+		9383	12368	5246	5283	9083	9083					-0.07328646003475114
ELARVRDIYH	10	Unmodified	_ELARVRDIYH_					0	0	0			REV__LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	REV__LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	636.3439331054688	2	636.346386	1270.67822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.221	1	37.838	37.338	38.338	-0.38283								0	0	0	0.93854	1	14000	14000		7.2892	1.0834	1		+		9384	13548	5247	5284	9084	9084					0.053706955489587926
ELCTLKKY	8	Unmodified	_ELCTLKKY_					0	0	0			REV__ENSG00000173276|ENST00000310826|ZBTB21	REV__ENSG00000173276|ENST00000310826|ZBTB21	MSMS	HCT116MG_D190212_S3	3	499.2545471191406	2	499.272978	996.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.794	1	35.494	34.994	35.994	-0.30012								0	0	0	0.8837	1	13204	13204		5.7604	1.0044	1		+		9385	13431	5248	5285	9085	9085					0.03299882339638316
ELCVLVSS	8	Unmodified	_ELCVLVSS_					0	0	0			REV__ENST00000525697.1_1_11:9830438-9830537:-|nuORF	REV__ENST00000525697.1_1_11:9830438-9830537:-|nuORF	MSMS	HCT116MG_D190212_S4	4	425.22210693359375	2	425.222954	848.431355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.635	1	48.267	47.767	48.767	-0.36728								0	0	0	0.8837	1	18018	18018		5.2307	1.6342	1		+		9386	12037	5249	5286	9086	9086					0.0010764500584627967
ELDADIAT	8	Unmodified	_ELDADIAT_					0	0	0			REV__CDH16|p.K563Sfs*22|2|0.25|ENSG00000166589|chr16:66912003-66912003|G/-|frameshift_variant	REV__CDH16|p.K563Sfs*22|2|0.25|ENSG00000166589|chr16:66912003-66912003|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	847.4036254882812	1	847.404354	846.397078	0.57625	0.00048832	-0.24888	-0.0002109	0.32738	0.00027742	847.4034119422627	37.297	0.20496	36.913	36.823	37.028	-0.3839					5	3	2	0	0	0	0.36164	1	13704	13704		53.576	0	1	2503300	+		9387	10132	5250	5287	9087	9087					-0.03226479881436717
ELDARHDKY	9	Unmodified	_ELDARHDKY_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	573.781005859375	2	573.780544	1145.54654	0.27146	0.00015576	0.37167	0.00021325	0.64312	0.00036901	573.7807741476605	18.949	0.15649	18.949	18.871	19.027	0					4	2	2	0	0	0	0.042037	1	6570	6570		93.938	44.005	1	6881500			9388	2548	5251	5288	9088	9088					-0.020415345388073547
ELDARHDKY	9	Unmodified	_ELDARHDKY_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MSMS	HCT116MG_D190212_S1	1	382.8560485839844	3	382.856122	1145.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.009	1	19.009	18.509	19.509	0								0	0	0	0.60249	1	6567	6567		23.801	5.428	1				9389	2548	5251	5288	9089	9089					-0.020415345388073547
ELDARHDKY	9	Unmodified	_ELDARHDKY_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	573.7805786132812	2	573.780544	1145.54654	0.35741	0.00020507	0.065193	3.7406E-05	0.4226	0.00024248	573.7804810390754	19.595	0.25961	19.22	19.091	19.351	-0.37503					10	4	3	0	0	0	0.0042855	1	6806	6806		171.46	86.192	1	47274000			9390	2548	5251	5288	9090	9090					-0.020415345388073547
ELDARHDKY	9	Unmodified	_ELDARHDKY_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	382.85589599609375	3	382.856122	1145.54654	-0.097269	-3.724E-05	-0.26595	-0.00010182	-0.36322	-0.00013906	382.8560474803991	19.595	0.46675	19.22	19.091	19.558	-0.37503					13	8	3	0	0	0	0.049866	1	6811	6811		74.772	36.157	1	26648000			9391	2548	5251	5288	9091	9091					-0.020415345388073547
ELDAVQREY	9	Unmodified	_ELDAVQREY_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	HCT116MG_D190212_S1	1	561.2655639648438	2	561.774928	1121.5353	0.55323	0.00031079	0.21382	0.00012012	0.76705	0.00043091	561.7748194976349	30.789	0.15612	30.789	30.659	30.815	0					4	2	2	0	0	0	0.029028	1	11304	11304		103.42	48.646	1	3972400			9392	1405	5252	5289	9092	9092					-0.020603566329327805
ELDDEFTPSNY	11	Unmodified	_ELDDEFTPSNY_					0	0	0			REV__ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant;REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	MSMS	HCT116MG_D190212_S2	2	664.8766479492188	2	665.277697	1328.54084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.523	1	38.438	37.938	38.938	-0.084618								0	0	0	0.9387	1	14472	14472		12.241	2.8575	1		+		9393	9831;9832	5253	5290	9093	9093					-0.11028722631772325
ELDDTLKY	8	Unmodified	_ELDDTLKY_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;ENST00000472253.1_1_5:133533465-133534901:-|nuORF	nc|ENSG00000113575|P67775-2|PPP2CA	nc|ENSG00000113575|P67775-2|PPP2CA	MULTI-MSMS	HCT116MG_D190212_S1	1	498.7479553222656	2	498.747847	995.481142	0.33061	0.00016489	-0.1638	-8.1696E-05	0.16681	8.3195E-05	498.7477460589506	37.785	0.31298	37.785	37.55	37.863	0					9	5	2	0	0	0	0.14283	1	14133	14133		85.272	24.882	1	12932000			9394	1944	5254	5291	9094	9094					-0.016779487845269614
ELDDTLKY	8	Unmodified	_ELDDTLKY_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;ENST00000472253.1_1_5:133533465-133534901:-|nuORF	nc|ENSG00000113575|P67775-2|PPP2CA	nc|ENSG00000113575|P67775-2|PPP2CA	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7477111816406	2	498.747847	995.481142	0.16516	8.2372E-05	0.27964	0.00013947	0.4448	0.00022184	498.7478710357144	37.82	0.30901	37.727	37.599	37.908	-0.09301					11	5	3	0	0	0	0.12671	1	14196	14196		88.954	27.596	1	69556000			9395	1944	5254	5291	9095	9095					-0.016779487845269614
ELDDTLKY	8	Unmodified	_ELDDTLKY_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;ENST00000472253.1_1_5:133533465-133534901:-|nuORF	nc|ENSG00000113575|P67775-2|PPP2CA	nc|ENSG00000113575|P67775-2|PPP2CA	MULTI-MSMS	HCT116MG_D190212_S3	3	498.7486572265625	2	498.747847	995.481142	0.49864	0.00024869	-0.058129	-2.8992E-05	0.44051	0.0002197	498.7479416351241	38.027	0.35385	37.726	37.583	37.937	-0.30137					17	9	3	0	0	0	0.057078	2	14061	14047;14061		115.69	37.708	1	20365000			9396	1944	5254	5291	9096;9097	9097					-0.016779487845269614
ELDDTLKY	8	Unmodified	_ELDDTLKY_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;ENST00000472253.1_1_5:133533465-133534901:-|nuORF	nc|ENSG00000113575|P67775-2|PPP2CA	nc|ENSG00000113575|P67775-2|PPP2CA	MSMS	HCT116MG_D190212_S4	4	498.74737548828125	2	498.747847	995.481142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.16	1	37.777	37.277	38.277	-0.38283								0	0	0	0.26903	1	13975	13975		58.679	7.8238	1				9397	1944	5254	5291	9098	9098					-0.016779487845269614
ELDERGHTLY	10	Unmodified	_ELDERGHTLY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	616.7994995117188	2	616.798934	1231.58332	0.30767	0.00018977	-0.63981	-0.00039464	-0.33214	-0.00020487	616.7986744889058	29.925	0.36146	29.624	29.444	29.805	-0.30095					11	6	3	0	0	0	0.031798	1	10996	10996		100.71	40.635	1	23547000			9398	4764	5255	5292	9099	9099					-0.02321282712887296
ELDERGHTLY	10	Unmodified	_ELDERGHTLY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	616.7990112304688	2	616.798934	1231.58332	0.5569	0.00034349	-0.24229	-0.00014944	0.31461	0.00019405	616.7988994570771	29.978	0.15902	29.742	29.662	29.822	-0.23655					4	2	2	0	0	0	0.40349	1	10937	10937		41.956	5.8285	1	4153500			9399	4764	5255	5292	9100	9100					-0.02321282712887296
ELDERLENDPN	11	Unmodified	_ELDERLENDPN_					0	0	0		ENSG00000114388|ENST00000232501|NPRL2;ENST00000461020.5_1_3:50385039-50386041:-|nuORF;ENST00000487632.5_1_3:50385039-50386411:-|nuORF;ENST00000467294.1_1_3:50385039-50385481:-|nuORF	ENSG00000114388|ENST00000232501|NPRL2	ENSG00000114388|ENST00000232501|NPRL2	MSMS	HCT116MG_D190212_S1	1	672.046630859375	2	672.30732	1342.60009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.743	1	36.743	36.243	37.243	0								0	0	0	0.92235	1	13706	13706		17.113	0	1				9400	2417	5256	5293	9101	9101					-0.05750826617600069
ELDIKEEII	9	Unmodified	_ELDIKEEII_					0	0	0			REV__DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	REV__DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	551.33837890625	2	551.305529	1100.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.491	1	48.347	47.847	48.847	-0.1437								0	0	0	0.64389	1	18528	18528		28.495	2.2264	1		+		9401	10424	5257	5294	9102	9102					0.05023155346475505
ELDILGLA	8	Unmodified	_ELDILGLA_					0	0	0			REV__ENST00000316594.5_1_X:100667715-100667856:+|nuORF	REV__ENST00000316594.5_1_X:100667715-100667856:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	843.4824829101562	1	843.482211	842.474934	0.80895	0.00068233	0.095988	8.0964E-05	0.90494	0.0007633	843.482089368373	57.36	0.15546	57.185	57.055	57.211	-0.17494					6	2	3	0	0	0	0.29313	1	22152	22152		59.795	0	1	14934000	+		9402	14863	5258	5295	9103	9103					0.04739577774626014
ELDKQQKKGKR	11	Unmodified	_ELDKQQKKGKR_					0	0	0			REV__ENSG00000173269|ENST00000372027|MMRN2	REV__ENSG00000173269|ENST00000372027|MMRN2	MULTI-MSMS	HCT116MG_D190212_S2	2	679.9009399414062	2	679.39915	1356.78375	0.2263	0.00015374	-0.43267	-0.00029395	-0.20637	-0.00014021	679.3986222377962	53.852	1.8033	53.663	52.449	54.252	-0.1894					63	34	3	0	0	0	0.73364	1	20663	20663		9.3831	1.7742	1	18843000	+		9403	13429	5259	5296	9104	9104					0.11962611674539403
ELDPAKRRH	9	Unmodified	_ELDPAKRRH_					0	0	0		ENSG00000214872|ENST00000527972|SMTNL1	ENSG00000214872|ENST00000527972|SMTNL1	ENSG00000214872|ENST00000527972|SMTNL1	MSMS	HCT116MG_D190212_S1	1	561.6845703125	2	561.312346	1120.61014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.825	1	30.825	30.325	31.325	0								0	0	0	0.61599	1	11320	11320		23.148	3.7094	1				9404	6441	5260	5297	9105	9105					0.05465870688931318
ELDPDNETY	9	Unmodified	_ELDPDNETY_					0	0	0		ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	MULTI-MSMS	HCT116MG_D190212_S3	3	1095.448486328125	1	1095.44768	1094.4404	0.4276	0.00046841	-0.19372	-0.00021221	0.23388	0.00025621	1095.447646938819	32.507	0.31264	32.228	32.046	32.358	-0.27841					8	5	2	0	0	0	0.0062667	1	11929	11929		126.57	62.33	1	4195700			9405	1973	5261	5298	9106	9106					-0.1030433489479492
ELDPLTGEWHY	11	Unmodified	_ELDPLTGEWHY_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	MULTI-MSMS	HCT116MG_D190212_S2	2	680.3143920898438	2	680.314417	1358.61428	0.19888	0.0001353	0.40355	0.00027454	0.60243	0.00040984	680.3144631701061	53.153	0.31158	52.964	52.809	53.121	-0.18922					12	5	3	0	0	0	0.036257	1	20450	20450		114.65	86.155	1	23684000			9406	1551	5262	5299	9107	9107					-0.050681293986599485
ELDPMAMTQKY	11	Unmodified	_ELDPMAMTQKY_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	HCT116MG_D190212_S1	1	663.8076171875	2	663.807056	1325.59956	0.68731	0.00045624	0.15334	0.00010179	0.84066	0.00055803	663.8071647371947	45.008	0.25925	45.008	44.88	45.139	0					7	4	2	0	0	0	2.941E-07	1	17052	17052		189.73	135.9	1	26363000			9407	1486	5263	5300	9108	9108					-0.05021660862666977
ELDPMAMTQKY	11	Unmodified	_ELDPMAMTQKY_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	HCT116MG_D190212_S2	2	663.8077392578125	2	663.807056	1325.59956	0.56	0.00037173	0.062613	4.1563E-05	0.62261	0.00041329	663.8072779977948	45.064	0.41797	44.972	44.735	45.153	-0.092472					23	7	5	0	0	0	2.606E-15	1	17117	17117		222.22	154.38	1	171650000			9408	1486	5263	5300	9109	9109					-0.05021660862666977
ELDPMAMTQKY	11	Unmodified	_ELDPMAMTQKY_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	HCT116MG_D190212_S3	3	663.8075561523438	2	663.807056	1325.59956	0.79402	0.00052707	-0.63112	-0.00041895	0.16289	0.00010813	663.8068362777683	45.256	0.31314	44.946	44.785	45.098	-0.30927					9	5	2	0	0	0	1.5441E-05	1	16953	16953		171.46	119.83	1	8704000			9409	1486	5263	5300	9110	9110					-0.05021660862666977
ELDPNNAVYY	10	Unmodified	_ELDPNNAVYY_					0	0	0		ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	MSMS	HCT116MG_D190212_S3	3	599.0191650390625	2	599.274761	1196.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.833	1	41.53	41.03	42.03	-0.30257								0	0	0	0.34824	1	15565	15565		56.177	21.775	1				9410	6181	5264	5301	9111	9111					-0.05543776352783425
ELDPSNTKALY	11	Unmodified	_ELDPSNTKALY_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-MSMS	HCT116MG_D190212_S3	3	625.8176879882812	2	625.816793	1249.61903	0.32889	0.00020582	0.28195	0.00017645	0.61084	0.00038227	625.8171480234103	36.67	0.26011	36.369	36.249	36.509	-0.30113					7	4	2	0	0	0	0.27657	1	13580	13580		66.683	31.751	1	2729100			9411	5200	5265	5302	9112	9112					0.004207547441183124
ELDPTNMTY	9	Unmodified	_ELDPTNMTY_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1083.4664306640625	1	1083.4663	1082.45903	0.66348	0.00071886	-0.27915	-0.00030245	0.38434	0.00041641	1083.4655702076066	41.604	0.20566	41.536	41.447	41.653	-0.068195					5	3	2	0	0	0	0.0035147	1	15750	15750		168.66	97.525	1	11595000			9412	5010	5266	5303	9113	9113					-0.07890496524601076
ELDQALLID	9	Unmodified	_ELDQALLID_					0	0	0			REV__ENST00000558660.1_1_15:89007913-89008959:-|nuORF	REV__ENST00000558660.1_1_15:89007913-89008959:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2769165039062	2	515.276772	1028.53899	0.20897	0.00010768	0.096447	4.9697E-05	0.30542	0.00015738	515.2766455773019	51.442	0.41166	51.262	51.118	51.53	-0.18008					11	7	2	0	0	0	0.069315	1	19765	19765		65.235	0	1	13991000	+		9413	14412	5267	5304	9114	9114					0.02586313140909624
ELDRDEPP	8	Unmodified	_ELDRDEPP_					0	0	0			REV__nc|ENSG00000137166|Q8IVH2-3|FOXP4	REV__nc|ENSG00000137166|Q8IVH2-3|FOXP4	MULTI-MSMS	HCT116MG_D190212_S3	3	485.72705078125	2	485.727446	969.44034	0.1666	8.092E-05	-1.5802	-0.00076754	-1.4136	-0.00068662	485.7266542764286	35.075	0.51919	34.778	34.492	35.011	-0.29707					14	9	2	0	0	0	0.66848	1	12951	12951		26.341	3.1929	1	3889800	+		9414	12163	5268	5305	9115	9115					-0.04560290104143405
ELDRQELTY	9	Unmodified	_ELDRQELTY_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	HCT116MG_D190212_S2	2	583.7879638671875	2	583.788035	1165.56152	0.64591	0.00037708	0.3425	0.00019995	0.98841	0.00057702	583.7880516502723	34.833	0.25921	34.675	34.554	34.813	-0.15834					6	4	2	0	0	0	0.053544	1	12994	12994		72.968	40.182	1	20664000			9415	4235	5269	5306	9116	9116					-0.014640874614542554
ELDRSNQAEY	10	Unmodified	_ELDRSNQAEY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	612.7783813476562	2	612.778199	1223.54184	0.50674	0.00031052	0.045915	2.8136E-05	0.55265	0.00033865	612.7781582898476	23.76	0.26032	23.377	23.195	23.456	-0.38324					7	4	2	0	0	0	0.11897	1	8496	8496		70.332	35.93	1	11772000			9416	1439	5270	5307	9117	9117					-0.06098463472221738
ELDRSNQAEY	10	Unmodified	_ELDRSNQAEY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant;FAT1|p.V1878Cfs*8|2|0.22|ENSG00000083857|chr4:186620955-186620956|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	612.7780151367188	2	612.778199	1223.54184	0.41147	0.00025214	0.21097	0.00012928	0.62244	0.00038142	612.7779683323577	23.339	0.20843	23.299	23.187	23.396	-0.03968					5	3	2	0	0	0	0.23035	1	8256	8256		53.404	18.472	1	3483100			9417	1439	5270	5307	9118	9118					-0.06098463472221738
ELDSKVEVLTY	11	Unmodified	_ELDSKVEVLTY_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-SECPEP	HCT116MG_D190212_S2	2	648.3800659179688	2	648.340101	1294.66565	0.7339	0.00047582	-0.33403	-0.00021657	0.39987	0.00025925	648.3399009830276	43.917	0.20581	43.839	43.71	43.916	-0.078373					5	3	2	0	0	0	0.29428	1	16678	16678		39.95	22.837	1	19789000			9418	4536	5271	5308	9119	9119					0.03010194575404057
ELDVRDRDGY	10	Unmodified	_ELDVRDRDGY_					0	0	0		ENSG00000187017|ENST00000645284|ESPN;ESPN|p.P431Hfs*32|1|0.28|ENSG00000187017|chr1:6445759-6445759|C/-|frameshift_variant	ENSG00000187017|ENST00000645284|ESPN	ENSG00000187017|ENST00000645284|ESPN	MULTI-MSMS	HCT116MG_D190212_S1	1	619.2943115234375	2	619.294016	1236.57348	0.53942	0.00033406	-0.28925	-0.00017913	0.25017	0.00015493	619.2938456995322	26.996	0.20782	26.996	26.918	27.125	0					5	3	2	0	0	0	0.26839	1	9809	9809		53.317	32.863	1	10638000			9419	5925	5272	5309	9120	9120					-0.03534470718273042
ELDVRDRDGY	10	Unmodified	_ELDVRDRDGY_					0	0	0		ENSG00000187017|ENST00000645284|ESPN;ESPN|p.P431Hfs*32|1|0.28|ENSG00000187017|chr1:6445759-6445759|C/-|frameshift_variant	ENSG00000187017|ENST00000645284|ESPN	ENSG00000187017|ENST00000645284|ESPN	MULTI-MSMS	HCT116MG_D190212_S2	2	619.294677734375	2	619.294016	1236.57348	0.7328	0.00045382	-0.10372	-6.423E-05	0.62909	0.00038959	619.2939900320149	27.401	0.20582	27.058	26.932	27.138	-0.34279					8	3	3	0	0	0	0.028311	1	9956	9956		105.35	75.505	1	22703000			9420	5925	5272	5309	9121	9121					-0.03534470718273042
ELDVRDRDGY	10	Unmodified	_ELDVRDRDGY_					0	0	0		ENSG00000187017|ENST00000645284|ESPN;ESPN|p.P431Hfs*32|1|0.28|ENSG00000187017|chr1:6445759-6445759|C/-|frameshift_variant	ENSG00000187017|ENST00000645284|ESPN	ENSG00000187017|ENST00000645284|ESPN	MULTI-SECPEP	HCT116MG_D190212_S3	3	619.3297729492188	2	619.294016	1236.57348	0.46468	0.00028777	-0.2426	-0.00015024	0.22208	0.00013753	619.2936372870612	27.315	0.15608	27.146	27.016	27.172	-0.16933					4	2	2	0	0	0	0.27368	1	9841	9841		16.566	9.9355	1	2911000			9421	5925	5272	5309	9122	9122					-0.03534470718273042
ELEDSTLRY	9	Unmodified	_ELEDSTLRY_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S1	1	563.2753295898438	2	563.274761	1124.53497	0.48476	0.00027305	0.13611	7.6668E-05	0.62087	0.00034972	563.2750698129428	35.984	0.31278	35.984	35.837	36.15	0					10	5	2	0	0	0	0.040027	1	13426	13426		79.596	37.757	1	6909400			9422	5492	5273	5310	9123	9123					-0.022317763528008072
ELEDSTLRY	9	Unmodified	_ELEDSTLRY_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	563.2756958007812	2	563.274761	1124.53497	0.78417	0.0004417	0.67139	0.00037818	1.4556	0.00081988	563.2752904363626	36.07	0.61898	35.942	35.452	36.071	-0.12799					19	11	3	0	0	0	0.011082	1	13473	13473		110.67	60.742	1	57614000			9423	5492	5273	5310	9124	9124					-0.022317763528008072
ELEDSTLRY	9	Unmodified	_ELEDSTLRY_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	563.2750854492188	2	563.274761	1124.53497	0.055068	3.1019E-05	0.68368	0.0003851	0.73875	0.00041612	563.2749972925802	36.219	0.67614	35.919	35.626	36.302	-0.30042					22	12	4	0	0	0	0.026999	1	13386	13386		89.401	45.628	1	21895000			9424	5492	5273	5310	9125	9125					-0.022317763528008072
ELEDSTLRY	9	Unmodified	_ELEDSTLRY_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	HCT116MG_D190212_S4	4	563.27490234375	2	563.274761	1124.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.365	1	35.98	35.48	36.48	-0.38558								0	0	0	0.063593	1	13305	13305		66.457	28.281	1				9425	5492	5273	5310	9126	9126					-0.022317763528008072
ELEELRQIVKQ	11	Unmodified	_ELEELRQIVKQ_					0	0	0		NUMA1|p.T1086I|1|0.08|ENSG00000137497|chr11:72014246-72014246|G/A|missense_variant	NUMA1|p.T1086I|1|0.08|ENSG00000137497|chr11:72014246-72014246|G/A|missense_variant	NUMA1|p.T1086I|1|0.08|ENSG00000137497|chr11:72014246-72014246|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	462.2645263671875	3	462.264669	1383.77218	0.23085	0.00010671	-0.12823	-5.9275E-05	0.10262	4.7439E-05	462.2645333202255	22.15	0.31238	21.765	21.583	21.896	-0.38503					16	5	4	0	0	0	0.7093	1	7836	7836		14.838	6.9919	1	50605000			9426	9711	5274	5311	9127	9127					0.0956436986054996
ELEETGIAT	9	Unmodified	_ELEETGIAT_					0	0	0		ADAMTSL3|p.R560G|1|0.06|ENSG00000156218|chr15:83899709-83899709|A/G|missense_variant	ADAMTSL3|p.R560G|1|0.06|ENSG00000156218|chr15:83899709-83899709|A/G|missense_variant	ADAMTSL3|p.R560G|1|0.06|ENSG00000156218|chr15:83899709-83899709|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	481.73773193359375	2	481.73748	961.460406	0.24201	0.00011659	0.55843	0.00026902	0.80044	0.0003856	481.7377641790682	37.148	0.31232	36.847	36.717	37.029	-0.30137					9	5	2	0	0	0	0.41514	1	13782	13782		21.747	0	1	4340900			9427	53	5275	5312	9128	9128					-0.021865391641881615
ELEEVEPQVK	10	Unmodified	_ELEEVEPQVK_					0	0	0			REV__ENSG00000129990|ENST00000354308|SYT5	REV__ENSG00000129990|ENST00000354308|SYT5	MSMS	HCT116MG_D190212_S4	4	600.313232421875	2	600.311343	1198.60813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.954	1	47.585	47.085	48.085	-0.36907								0	0	0	0.94339	1	17744	17744		6.2058	0.9089	1		+		9428	11902	5276	5313	9129	9129					0.016773523698020654
ELEGLPSL	8	Unmodified	_ELEGLPSL_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MSMS	HCT116MG_D190212_S1	1	429.23309326171875	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.252	1	33.252	32.752	33.752	0								0	0	0	0.8837	1	12299	12299		8.5933	0	1		+		9429	13151	5277	5314	9130	9130					0.02022987394957454
ELEGNEAADH	10	Unmodified	_ELEGNEAADH_					0	0	0			REV__ESPN|p.P431Hfs*32|1|0.28|ENSG00000187017|chr1:6445759-6445759|C/-|frameshift_variant	REV__ESPN|p.P431Hfs*32|1|0.28|ENSG00000187017|chr1:6445759-6445759|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	542.73291015625	2	542.730717	1083.44688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.518	1	37.134	36.634	37.634	-0.3839								0	0	0	0.94925	1	13771	13771		4.897	0.56777	1		+		9430	13910	5278	5315	9131	9131					-0.09150396943414307
ELEHDKNSP	9	Unmodified	_ELEHDKNSP_					0	0	0		nc|ENSG00000187720|Q6ZMP0-3|THSD4	nc|ENSG00000187720|Q6ZMP0-3|THSD4	nc|ENSG00000187720|Q6ZMP0-3|THSD4	MULTI-SECPEP	HCT116MG_D190212_S4	4	534.7823486328125	2	534.751453	1067.48835	0.41154	0.00022007	0.28699	0.00015347	0.69853	0.00037354	534.751893895164	19.377	0.26002	19.19	18.973	19.233	-0.18674					6	4	2	0	0	0	0.23301	1	6578	6578		21.747	4.8044	1	4207400			9431	9587	5279	5316	9132	9132					-0.042692161840932386
ELEHQYYRRWN	11	Unmodified	_ELEHQYYRRWN_					0	0	0		ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	MSMS	HCT116MG_D190212_S3	3	797.3792114257812	2	797.381488	1592.74842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.65	1	30.397	29.897	30.897	-0.25291								0	0	0	0.95954	1	11168	11168		1.3295	0.13619	1				9432	8814	5280	5317	9133	9133					-0.024240508532557214
ELEHQYYRRWN	11	Unmodified	_ELEHQYYRRWN_					0	0	0		ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	MSMS	HCT116MG_D190212_S4	4	797.37939453125	2	797.381488	1592.74842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.138	1	27.807	27.307	28.307	-0.33138								0	0	0	0.95954	1	10105	10105		1.3295	0.13619	1				9433	8814	5280	5317	9134	9134					-0.024240508532557214
ELEHQYYRRWN	11	Unmodified	_ELEHQYYRRWN_					0	0	0		ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	MSMS	HCT116MG_D190212_S4	4	797.37890625	2	797.381488	1592.74842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.898	1	29.541	29.041	30.041	-0.3571								0	0	0	0.95954	1	10816	10816		1.3295	0	1				9434	8814	5280	5317	9135	9135					-0.024240508532557214
ELEHQYYRRWN	11	Unmodified	_ELEHQYYRRWN_					0	0	0		ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	MSMS	HCT116MG_D190212_S4	4	797.1576538085938	2	797.381488	1592.74842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.99	1	30.626	30.126	31.126	-0.36416								0	0	0	0.95954	1	11229	11229		1.3295	0.13619	1				9435	8814	5280	5317	9136	9136					-0.024240508532557214
ELEKAARIE	9	Unmodified	_ELEKAARIE_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	HCT116MG_D190212_S3	3	353.53289794921875	3	353.532868	1057.57677	-0.051236	-1.8114E-05	-0.015746	-5.5667E-06	-0.066982	-2.368E-05	353.53282169142136	26.95	0.20845	26.781	26.651	26.859	-0.16933					5	3	2	0	0	0	0.62849	1	9710	9710		9.544	0	1	2537000	+		9436	12804	5281	5318	9137	9137					0.05028824126361542
ELEKAARIE	9	Unmodified	_ELEKAARIE_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MSMS	HCT116MG_D190212_S4	4	353.53277587890625	3	353.532868	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.215	1	26.904	26.404	27.404	-0.3114								0	0	0	0.76849	1	9732	9732		6.1918	0	1		+		9437	12804	5281	5318	9138	9138					0.05028824126361542
ELEKAARIE	9	Unmodified	_ELEKAARIE_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	353.532868	1057.57677	-0.051236	-1.8114E-05	-0.015746	-5.5667E-06	-0.066982	-2.368E-05	353.53282169142136	26.95	0.20845	26.781	26.651	26.859	-0.16933	-0.019687	1.6874E-05	NaN	9.544	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2537000	+		9438	12804	5281	5318							0.05028824126361542
ELEKAARIE	9	Unmodified	_ELEKAARIE_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH	HCT116MG_D190212_S4	4		3	353.532868	1057.57677	0.016149	5.7091E-06	-0.11777	-4.1635E-05	-0.10162	-3.5926E-05	353.5327145317396	27.132	0.15612	26.821	26.742	26.899	-0.3114	0.019687	-9.133E-05	NaN	9.544	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1811400	+		9439	12804	5281	5318							0.05028824126361542
ELEKEELY	8	Unmodified	_ELEKEELY_					0	0	0			REV__nc|ENSG00000156042|Q5T0N1-6|CFAP70	REV__nc|ENSG00000156042|Q5T0N1-6|CFAP70	MSMS	HCT116MG_D190212_S1	1	526.7609252929688	2	526.760955	1051.50736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.384	1	38.384	37.884	38.884	0								0	0	0	0.55681	1	14369	14369		39.957	5.8549	1		+		9440	17172	5282	5319	9139	9139					-0.016336796130190123
ELEKLLSYWFR	11	Unmodified	_ELEKLLSYWFR_					0	0	0			REV__ENSG00000053328|ENST00000338882|METTL24	REV__ENSG00000053328|ENST00000338882|METTL24	MSMS	HCT116MG_D190212_S1	1	742.3991088867188	2	742.400827	1482.7871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.026	1	54.026	53.526	54.526	0								0	0	0	0.95196	1	20706	20706		5.2969	2.3016	1		+		9441	10628	5283	5320	9140	9140					0.06501861728565927
ELEKSVYWDY	10	Unmodified	_ELEKSVYWDY_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MSMS	HCT116MG_D190212_S1	1	666.311767578125	2	666.311343	1330.60813	0.81419	0.0005425	-0.067797	-4.5174E-05	0.74639	0.00049733	666.3110632614621	46.665	0.25916	46.665	46.492	46.751	0					9	4	3	0	0	0	0.011036	1	17720	17720		143.21	99.441	1	34867000			9442	3706	5284	5321	9141	9141					-0.04394647630169857
ELEKSVYWDY	10	Unmodified	_ELEKSVYWDY_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MSMS	HCT116MG_D190212_S2	2	666.3123779296875	2	666.311343	1330.60813	0.82238	0.00054796	0.10687	7.1207E-05	0.92925	0.00061917	666.311327361315	46.709	0.30891	46.598	46.42	46.729	-0.11122					20	5	4	0	0	0	0.0089527	1	17783	17783		154.75	99.25	1	243110000			9443	3706	5284	5321	9142	9142					-0.04394647630169857
ELEKSVYWDY	10	Unmodified	_ELEKSVYWDY_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MSMS	HCT116MG_D190212_S2	2	1331.615966796875	1	1331.61541	1330.60813	1.0519	0.0014007	-0.44796	-0.00059651	0.60391	0.00080417	1331.6145478538458	46.711	0.25724	46.6	46.42	46.677	-0.11121					8	4	3	0	0	0	0.019498	1	17816	17816		121.35	86.414	1	14737000			9444	3706	5284	5321	9143	9143					-0.04394647630169857
ELEKSVYWDY	10	Unmodified	_ELEKSVYWDY_					0	0	0		nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	666.311343	1330.60813	0.84989	0.00056629	-0.11519	-7.6751E-05	0.7347	0.00048954	666.311360685016	46.882	0.15638	46.568	46.49	46.646	-0.31405	-0.042483	-0.00023237	NaN	154.75	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3976200			9445	3706	5284	5321							-0.04394647630169857
ELEQQFDFLK	10	Unmodified	_ELEQQFDFLK_					0	0	0		ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	MSMS	HCT116MG_D190212_S2	2	432.5618591308594	3	432.887199	1295.63977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4141	1	8.183	7.683	8.683	-0.23116								0	0	0	0.96864	1	2632	2632		0.56317	0.1965	1				9446	5386	5285	5322	9144	9144					0.0037734512375209306
ELEQTILGP	9	Unmodified	_ELEQTILGP_					0	0	0			REV__ENST00000491580.1_1_3:111697881-111705196:+|nuORF	REV__ENST00000491580.1_1_3:111697881-111705196:+|nuORF	MSMS	HCT116MG_D190212_S3	3	500.2704162597656	2	500.27149	998.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.372	1	38.071	37.571	38.571	-0.30137								0	0	0	0.76669	1	14212	14212		12.532	2.3482	1		+		9447	16042	5286	5323	9145	9145					0.029103304864975144
ELFDEHTEKA	10	Unmodified	_ELFDEHTEKA_					0	0	0			REV__ENST00000465090.2_1_2:230787229-230841127:+|nuORF	REV__ENST00000465090.2_1_2:230787229-230841127:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	610.18408203125	2	609.785492	1217.55643	0.67	0.00040856	-0.68768	-0.00041934	-0.017673	-1.0777E-05	609.7852023745799	33.143	0.25964	33.143	32.985	33.244	0					9	4	3	0	0	0	0.3093	1	12214	12214		5.7319	5.7319	1	5633900	+		9448	12660	5287	5324	9146	9146					-0.04364391324088501
ELFLFLLKKLQ	11	Unmodified	_ELFLFLLKKLQ_					0	0	0			REV__ENSG00000139330|ENST00000266719|KERA	REV__ENSG00000139330|ENST00000266719|KERA	MSMS	HCT116MG_D190212_S3	3	696.4378051757812	2	696.436681	1390.85881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.404	1	47.089	46.589	47.589	-0.31525								0	0	0	0.96141	1	17801	17801		0.35063	0	1		+		9449	12259	5288	5325	9147	9147					0.17901401153085317
ELFRRLQKWE	10	Unmodified	_ELFRRLQKWE_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MSMS	HCT116MG_D190212_S2	2	702.8887939453125	2	702.890961	1403.76737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.661	1	28.336	27.836	28.836	-0.32481								0	0	0	0.94746	1	10464	10464		5.2969	0.39987	1				9450	6230	5289	5326	9148	9148					0.08163530508454642
ELGATAPGPA	10	Unmodified	_ELGATAPGPA_					0	0	0		ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	883.451904296875	1	883.451973	882.444697	0.88427	0.00078121	0.20361	0.00017988	1.0879	0.00096109	883.4521415187763	27.34	0.2596	27.028	26.95	27.21	-0.3114					6	4	2	0	0	0	0.14986	1	9812	9812		64.236	9.4628	1	1851600			9451	7394	5290	5327	9149	9149					-0.0012278089055826058
ELGATAPGPA	10	Unmodified	_ELGATAPGPA_					0	0	0		ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	883.451973	882.444697	0.81697	0.00072175	-0.36714	-0.00032435	0.44983	0.0003974	883.4516043654543	27.23	0.20814	27.061	26.964	27.172	-0.16933	0.016224	-0.00010358	NaN	64.236	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2947600			9452	7394	5290	5327							-0.0012278089055826058
ELGAVSLQD	9	Unmodified	_ELGAVSLQD_					0	0	0		nc|ENSG00000115317|O43464-3|HTRA2	nc|ENSG00000115317|O43464-3|HTRA2	nc|ENSG00000115317|O43464-3|HTRA2	MULTI-MSMS	HCT116MG_D190212_S1	1	932.4163208007812	1	931.473103	930.465826	0.82857	0.00077179	-0.42657	-0.00039734	0.402	0.00037445	931.4726515011007	57.697	0.31076	57.697	57.464	57.775	0					9	5	2	0	0	0	0.61923	1	22185	22185		10.074	0.6908	1	8576900			9453	9432	5291	5328	9150	9150					-0.0021881558170662174
ELGAWLLEF	9	Unmodified	_ELGAWLLEF_					0	0	0			REV__ENSG00000196666|ENST00000538490|FAM180B	REV__ENSG00000196666|ENST00000538490|FAM180B	MSMS	HCT116MG_D190212_S4	4	539.2827758789062	2	539.2844	1076.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.291	1	54.973	54.473	55.473	-0.31774								0	0	0	0.76603	1	20698	20698		14.838	1.2234	1		+		9454	14042	5292	5329	9151	9151					0.019032247287668724
ELGECPIDFV	10	Unmodified	_ELGECPIDFV_					0	0	0			REV__SYT4|p.I370Mfs*3|1|0.37|ENSG00000132872|chr18:43270508-43270509|TT/-|frameshift_variant	REV__SYT4|p.I370Mfs*3|1|0.37|ENSG00000132872|chr18:43270508-43270509|TT/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	561.2655639648438	2	561.262807	1120.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.785	1	30.785	30.285	31.285	0								0	0	0	0.72975	1	11304	11304		36.127	1.195	1		+		9455	12009	5293	5330	9152	9152					-0.04437333110831787
ELGGLGAI	8	Unmodified	_ELGGLGAI_					0	0	0		ENST00000582608.5_1_17:80403674-80404562:-|nuORF	ENST00000582608.5_1_17:80403674-80404562:-|nuORF	ENST00000582608.5_1_17:80403674-80404562:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	729.415283203125	1	729.414131	728.406855	1.3453	0.00098131	-0.13526	-9.866E-05	1.2101	0.00088265	729.4139879673781	47.778	0.31007	47.645	47.48	47.79	-0.13281					8	5	2	0	0	0	0.29313	1	18245	18245		59.795	7.1021	1	18748000			9456	8961	5294	5331	9153	9153					0.03178752914618599
ELGGPSGP	8	Unmodified	_ELGGPSGP_					0	0	0		ENSG00000187808|ENST00000343905|SOWAHD	ENSG00000187808|ENST00000343905|SOWAHD;REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-SECPEP	HCT116MG_D190212_S2	2	356.6846923828125	2	357.176861	712.339169	-0.1241	-4.4324E-05	-0.18287	-6.5318E-05	-0.30697	-0.00010964	357.1767716557829	24.854	0.25899	24.478	24.349	24.608	-0.37521					6	4	2	0	0	0	0.30703	1	8968	8968		7.9102	2.6795	1	8884000			9457	14187;5960	5295	5332	9154	9154					-0.028506970161743084
ELGGTAAV	8	Unmodified	_ELGGTAAV_					0	0	0			REV__ENST00000368680.3_1_1:153651158-153651548:+|nuORF	REV__ENST00000368680.3_1_1:153651158-153651548:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	717.378173828125	1	717.377746	716.370469	0.87159	0.00062526	-0.34199	-0.00024534	0.5296	0.00037993	717.3777140819737	37.257	0.20625	37.154	37.026	37.232	-0.10318					6	3	2	0	0	0	0.50777	1	13986	13986		40.449	0	1	17206000	+		9458	15136	5296	5333	9155	9155					0.0009387601791104316
ELGLLDTVTY	10	Unmodified	_ELGLLDTVTY_					0	0	0		nc|ENSG00000168907|Q68DD2-2|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	MULTI-SECPEP	HCT116MG_D190212_S2	2	562.3035888671875	2	562.297704	1122.58086	0.39549	0.00022238	2.0363	0.001145	2.4318	0.0013674	562.2981554600482	46.229	0.51413	46.128	45.761	46.275	-0.1014					16	9	3	0	0	0	0.186	1	17532	17532		68.081	1.624	1	64324000			9459	5038	5297	5334	9156	9156					0.02446868829451887
ELGLRTQAL	9	Unmodified	_ELGLRTQAL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20;ENST00000478072.2_1_9:104323064-104323554:+|nuORF	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	HCT116MG_D190212_S1	1	500.8055419921875	2	500.792924	999.571294	0.30688	0.00015369	0.72752	0.00036434	1.0344	0.00051802	500.79304190170836	43.073	0.41655	43.073	42.9	43.316	0					11	7	3	0	0	0	0.16757	1	16272	16272		36.127	1.7253	1	6894400			9460	4264	5298	5335	9157	9157					0.07149145334562945
ELGTILLLFLF	11	Unmodified	_ELGTILLLFLF_					0	0	0			REV__tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1	REV__tr|U7T0V8|U7T0V8_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00693PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	639.8905639648438	2	639.889032	1277.76351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.239	1	45.927	45.427	46.427	-0.31237								0	0	0	0.95636	1	17332	17332		2.9952	1.151	1		+		9461	17898	5299	5336	9158	9158					0.13574047962038094
ELHEWHWFLLI	11	Unmodified	_ELHEWHWFLLI_					0	0	0			REV__ENST00000274542.6_1_5:158590058-158595923:-|nuORF	REV__ENST00000274542.6_1_5:158590058-158595923:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	508.976318359375	3	508.266233	1521.77687	0.3713	0.00018872	-3.074	-0.0015624	-2.7027	-0.0013737	508.598455755086	48.986	0.2523	48.832	48.733	48.985	-0.15405					6	4	2	0	0	0	0.3662	1	18706	18706		0.40827	0.078994	1	12804000	+		9462	14704	5300	5337	9159	9159					0.03685298793993752
ELHLEGYVPEG	11	Unmodified	_ELHLEGYVPEG_					0	0	0		APBA2|p.P37H|1|0.19|ENSG00000034053|chr15:29053994-29053994|C/A|missense_variant	APBA2|p.P37H|1|0.19|ENSG00000034053|chr15:29053994-29053994|C/A|missense_variant	APBA2|p.P37H|1|0.19|ENSG00000034053|chr15:29053994-29053994|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	621.8042602539062	2	621.803685	1241.59282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.141	1	33.966	33.466	34.466	-0.17512								0	0	0	0.9465	1	12692	12692		8.1555	1.0538	1				9463	155	5301	5338	9160	9160					-0.018315144273628903
ELHLILQQP	9	Unmodified	_ELHLILQQP_					0	0	0		ENST00000423038.1_1_X:47132767-47133175:-|nuORF	ENST00000423038.1_1_X:47132767-47133175:-|nuORF	ENST00000423038.1_1_X:47132767-47133175:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	545.316650390625	2	545.816399	1089.61824	0.6509	0.00035527	1.7892	0.00097656	2.4401	0.0013318	545.8172764205701	47.208	0.41313	47.087	46.871	47.285	-0.12175					10	7	2	0	0	0	0.25004	1	18068	18068		15.847	12.251	1	7224300			9464	7797	5302	5339	9161	9161					0.07702004885709357
ELHLLTADVEH	11	Unmodified	_ELHLLTADVEH_					0	0	0			REV__ENST00000336180.6_1_7:73498316-73500123:+|nuORF	REV__ENST00000336180.6_1_7:73498316-73500123:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	638.8311767578125	2	638.830234	1275.64592	0.45775	0.00029242	0.31953	0.00020413	0.77728	0.00049655	638.8305651892549	42.006	0.42455	41.63	41.413	41.838	-0.37637					14	8	2	0	0	0	0.68267	1	15400	15400		26.268	7.895	1	6144000	+		9465	14951	5303	5340	9162	9162					0.019118633552807296
ELHMPITV	8	Unmodified	_ELHMPITV_					0	0	0		DISP1|p.N862Tfs*64|1|0.45|ENSG00000154309|chr1:223003979-223003979|A/-|frameshift_variant;DISP1|p.S1299Ffs*6|1|0.05|ENSG00000154309|chr1:223005292-223005293|-/TTTG|frameshift_variant;DISP1|p.E1470Gfs*5|1|0.31|ENSG00000154309|chr1:223005800-223005801|-/G|frameshift_variant;ENSG00000154309|ENST00000675850|DISP1	DISP1|p.N862Tfs*64|1|0.45|ENSG00000154309|chr1:223003979-223003979|A/-|frameshift_variant	DISP1|p.N862Tfs*64|1|0.45|ENSG00000154309|chr1:223003979-223003979|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	470.3697509765625	2	470.252046	938.489538	0.1985	9.3344E-05	0.21463	0.00010093	0.41313	0.00019428	470.2522468747621	37.001	0.36069	36.886	36.705	37.066	-0.11478					9	6	2	0	0	0	0.31507	1	13867	13867		14.582	9.8257	1	47340000			9466	680	5304	5341	9163	9163					0.01783326651104744
ELHSNRRLP	9	Unmodified	_ELHSNRRLP_					0	0	0			REV__nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	REV__nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	MSMS	HCT116MG_D190212_S1	1	561.7750244140625	2	561.312346	1120.61014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.858	1	30.858	30.358	31.358	0								0	0	0	0.71969	1	11333	11333		18.135	5.6034	1		+		9467	10931	5305	5342	9164	9164					0.05465870688931318
ELHYRYSLSRE	11	Unmodified	_ELHYRYSLSRE_					0	0	0			REV__sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	REV__sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	726.8652954101562	2	726.86514	1451.71573	0.68633	0.00049887	-0.6171	-0.00044855	0.069233	5.0323E-05	726.8646842473338	44.587	0.209	44.587	44.464	44.673	0					7	3	3	0	0	0	0.73474	1	16904	16904		8.9762	5.6949	1	12615000	+		9468	17563	5306	5343	9165	9165					0.007937420238931736
ELIEHRLTPFY	11	Unmodified	_ELIEHRLTPFY_					0	0	0			REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MSMS	HCT116MG_D190212_S3	3	709.3773193359375	2	709.377352	1416.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.579	1	40.277	39.777	40.777	-0.30161								0	0	0	0.94416	1	15069	15069		9.3831	0	1		+		9469	15565	5307	5344	9166	9166					0.04845002177398783
ELIKKHLLPLW	11	Unmodified	_ELIKKHLLPLW_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MSMS	HCT116MG_D190212_S4	4	695.4319458007812	2	695.434473	1388.85439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.119	1	57.831	57.331	58.331	-0.28879								0	0	0	0.95581	1	21834	21834		3.2813	0.28607	1				9470	2467	5308	5345	9167	9167					0.17551936730160378
ELIRIRRRIKV	11	Unmodified	_ELIRIRRRIKV_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MSMS	HCT116MG_D190212_S1	1	726.487060546875	2	726.485894	1450.95723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.411	1	43.411	42.911	43.911	0								0	0	0	0.96149	1	16399	16399		0.30703	0.30703	1		+		9471	11258	5309	5346	9168	9168					0.2497944224148796
ELISIKRKVLY	11	Unmodified	_ELISIKRKVLY_					0	0	0			REV__tr|U7SPS2|U7SPS2_FUSNUAntifreezeproteintypeIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01880PE=4SV=1	REV__tr|U7SPS2|U7SPS2_FUSNUAntifreezeproteintypeIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01880PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	681.7727661132812	2	681.429387	1360.84422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.668	1	38.367	37.867	38.867	-0.30137								0	0	0	0.95581	1	14332	14332		3.2813	0.78282	1		+		9472	17749	5310	5347	9169	9169					0.17823329004954758
ELKAALAEP	9	Unmodified	_ELKAALAEP_					0	0	0			REV__ENSG00000197745|ENST00000358585|SCGB1D4	REV__ENSG00000197745|ENST00000358585|SCGB1D4	MSMS	HCT116MG_D190212_S4	4	471.26788330078125	2	471.26875	940.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.37	1	44.997	44.497	45.497	-0.37266								0	0	0	0.76575	1	16734	16734		15.847	1.0089	1		+		9473	14089	5311	5348	9170	9170					0.05030651694653443
ELKAFPNPPI	10	Unmodified	_ELKAFPNPPI_					0	0	0		DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	563.2559814453125	2	563.318774	1124.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.836	1	38.454	37.954	38.954	-0.38163								0	0	0	0.94339	1	14248	14248		6.2058	0.9089	1				9474	698	5312	5349	9171	9171					0.06566889028476908
ELKAVDLSNST	11	Unmodified	_ELKAVDLSNST_					0	0	0		tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	588.8094482421875	2	588.808968	1175.60338	0.44539	0.00026225	-0.025032	-1.4739E-05	0.42036	0.00024751	588.8089531501	28.091	0.41722	27.903	27.725	28.142	-0.18847					22	7	4	0	0	0	0.72004	1	10135	10135		14.405	0.79051	1	48686000			9475	18438	5313	5350	9172	9172					0.022604682270412013
ELKAVDLSNST	11	Unmodified	_ELKAVDLSNST_					0	0	0		tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	588.808968	1175.60338	0.61562	0.00036248	-0.42993	-0.00025314	0.1857	0.00010934	588.8088980721174	27.744	0.3121	27.744	27.592	27.904	0	-0.098166	-0.00039793	NaN	14.405	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10894000			9476	18438	5313	5350							0.022604682270412013
ELKAVDLSNST	11	Unmodified	_ELKAVDLSNST_					0	0	0		tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	588.808968	1175.60338	0.59074	0.00034783	-0.19046	-0.00011214	0.40028	0.00023569	588.8087553331478	28.126	0.36289	27.796	27.615	27.977	-0.32987	-0.046641	-0.00011593	NaN	14.405	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123330000			9477	18438	5313	5350							0.022604682270412013
ELKEKKFPP	9	Unmodified	_ELKEKKFPP_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	558.3284301757812	2	558.326599	1114.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.653	1	47.284	46.784	47.784	-0.36907								0	0	0	0.76781	1	17623	17623		8.5933	1.8701	1				9478	5996	5314	5351	9173	9173					0.08591175545507213
ELKEKKFPP	9	Unmodified	_ELKEKKFPP_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	557.9405517578125	2	558.326599	1114.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.008	1	47.639	47.139	48.139	-0.36907								0	0	0	0.76718	1	17766	17766		10.824	2.0785	1				9479	5996	5314	5351	9174	9174					0.08591175545507213
ELKELKKKVT	10	Unmodified	_ELKELKKKVT_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MSMS	HCT116MG_D190212_S2	2	608.38525390625	2	608.387188	1214.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.947	1	53.758	53.258	54.258	-0.1894								0	0	0	0.94551	1	20758	20758		5.7319	0.83484	1				9480	4091	5315	5352	9175	9175					0.16103378188199713
ELKEPGKY	8	Unmodified	_ELKEPGKY_					0	0	0		nc|ENSG00000151490|Q16827-5|PTPRO;chr12:15595640-15596090|345|13.48|0.69|4.28|+|ENST00000674286|PTPRO,PTPRO;nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO	nc|ENSG00000151490|Q16827-5|PTPRO	nc|ENSG00000151490|Q16827-5|PTPRO	MSMS	HCT116MG_D190212_S4	4	482.259521484375	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.262	1	28.913	28.413	29.413	-0.34921								0	0	0	0.8837	1	10559	10559		12.532	1.4171	1				9481	440	5316	5353	9176	9176					0.024543651776298248
ELKGKFEWIKE	11	Unmodified	_ELKGKFEWIKE_					0	0	0			REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1	REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MSMS	HCT116MG_D190212_S1	1	703.8875122070312	2	703.887552	1405.76055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.214	1	50.214	49.714	50.714	0								0	0	0	0.95574	1	19154	19154		3.3196	0.3244	1		+		9482	12306	5317	5354	9177	9177					0.0739017283724479
ELKGRIPKV	9	Unmodified	_ELKGRIPKV_					0	0	0		ENST00000592808.1_1_19:12885462-12885621:-|nuORF	ENST00000592808.1_1_19:12885462-12885621:-|nuORF	ENST00000592808.1_1_19:12885462-12885621:-|nuORF	MSMS	HCT116MG_D190212_S2	2	520.33251953125	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.891	1	46.775	46.275	47.275	-0.11649								0	0	0	0.76862	1	17873	17873		5.7319	1.4026	1				9483	9042	5318	5355	9178	9178					0.13718301502285613
ELKGRIPKV	9	Unmodified	_ELKGRIPKV_					0	0	0		ENST00000592808.1_1_19:12885462-12885621:-|nuORF	ENST00000592808.1_1_19:12885462-12885621:-|nuORF	ENST00000592808.1_1_19:12885462-12885621:-|nuORF	MSMS	HCT116MG_D190212_S2	2	520.3333129882812	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.977	1	46.855	46.355	47.355	-0.12175								0	0	0	0.76603	1	17908	17908		14.838	4.7643	1				9484	9042	5318	5355	9179	9179					0.13718301502285613
ELKIRENLLQ	10	Unmodified	_ELKIRENLLQ_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MSMS	HCT116MG_D190212_S2	2	628.3705444335938	2	628.372069	1254.72959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.086	1	43.012	42.512	43.512	-0.073376								0	0	0	0.93466	1	16327	16327		8.1555	0	1		+		9485	11335	5319	5356	9180	9180					0.11241019522981333
ELKKLQIYG	9	Unmodified	_ELKKLQIYG_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;KDM5D|p.P267Qfs*5|1|0.31|ENSG00000012817|chrY:19735485-19735485|G/-|frameshift_variant;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-4|KDM5C	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.010986328125	2	546.326599	1090.63865	0.54671	0.00029868	0.3588	0.00019602	0.90551	0.00049471	546.3265998653824	57.204	0.51925	57.025	56.844	57.363	-0.17904					14	9	3	0	0	0	0.26505	1	22126	22126		6.7232	0.51738	1	63165000			9486	9447;908	5320	5357	9181	9181					0.09695175545539314
ELKKMKKRLRP	11	Unmodified	_ELKKMKKRLRP_					0	0	0			REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MSMS	HCT116MG_D190212_S2	2	476.30670166015625	3	476.306146	1425.89661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.584	1	33.391	32.891	33.891	-0.19297								0	0	0	0.96003	1	12467	12467		0.36667	0	1		+		9487	15779	5321	5358	9182	9182					0.20069588866908816
ELKKMKKRLRP	11	Unmodified	_ELKKMKKRLRP_					0	0	0			REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MSMS	HCT116MG_D190212_S3	3	476.3064270019531	3	476.306146	1425.89661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.682	1	54.386	53.886	54.886	-0.29587								0	0	0	0.9598	1	20725	20725		0.40827	0.041592	1		+		9488	15779	5321	5358	9183	9183					0.20069588866908816
ELKKMKKRLRP	11	Unmodified	_ELKKMKKRLRP_					0	0	0			REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	REV__ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MSMS	HCT116MG_D190212_S4	4	476.30645751953125	3	476.306146	1425.89661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.193	1	41.818	41.318	42.318	-0.37565								0	0	0	0.9598	1	15498	15498		0.40827	0	1		+		9489	15779	5321	5358	9184	9184					0.20069588866908816
ELKKMLKRM	9	Unmodified	_ELKKMLKRM_					0	0	0			REV__tr|U7T2Z9|U7T2Z9_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00523PE=4SV=1	REV__tr|U7T2Z9|U7T2Z9_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00523PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	588.85107421875	2	588.851404	1175.68826	0.57939	0.00034118	-0.42153	-0.00024822	0.15786	9.2955E-05	588.8508653125581	54.434	0.76791	54.245	53.842	54.61	-0.1894					27	14	3	0	0	0	0.71546	1	20892	20892		6.7232	0	1	39621000	+		9490	17937	5322	5359	9185	9185					0.10743843958312027
ELKKMLKRM	9	Unmodified	_ELKKMLKRM_					0	0	0			REV__tr|U7T2Z9|U7T2Z9_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00523PE=4SV=1	REV__tr|U7T2Z9|U7T2Z9_FUSNUDUF304domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00523PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	589.3447875976562	2	588.851404	1175.68826	0.57939	0.00034118	-0.42153	-0.00024822	0.15786	9.2955E-05	588.8508653125581	54.434	0.76791	54.245	53.842	54.61	-0.1894					27	14	3	0	0	0	0.26505	1	20875	20875		1.4819	1.4819	1	39621000	+		9491	17937	5322	5359	9186	9186					0.10743843958312027
ELKKNAIKR	9	Unmodified	_ELKKNAIKR_					0	0	0		ENST00000438623.1_1_1:248726125-248726230:+|nuORF	ENST00000438623.1_1_1:248726125-248726230:+|nuORF	ENST00000438623.1_1_1:248726125-248726230:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	550.3513793945312	2	550.35094	1098.68733	0.41293	0.00022726	0.10286	5.6611E-05	0.51579	0.00028387	550.350722007546	60.62	0.87482	60.62	60.439	61.314	0					29	16	3	0	0	0	0.71898	1	23372	23372		3.9444	0.3479	1	145610000			9492	7900	5323	5360	9187	9187					0.14193088905290097
ELKKPKRHQ	9	Unmodified	_ELKKPKRHQ_					0	0	0			REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	REV__tr|U7SPA6|U7SPA6_FUSNUNa+/H+antiporterNhaCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01791PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	582.353759765625	2	582.354014	1162.69348	0.64992	0.00037848	-0.76403	-0.00044494	-0.11411	-6.6454E-05	582.3534150658879	54.409	0.20264	54.409	54.282	54.485	0					6	3	2	0	0	0	0.71546	1	20870	20870		6.7232	6.7232	1	94718000	+		9493	17747	5324	5361	9188	9188					0.11863607136797327
ELKKQLKLHRK	11	Unmodified	_ELKKQLKLHRK_					0	0	0		NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant;NBR1|p.L746Wfs*50|1|0.23|ENSG00000188554|chr17:43200372-43200372|C/-|frameshift_variant;nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant	NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	710.9624633789062	2	710.959178	1419.9038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.566	1	28.236	27.736	28.736	-0.32987								0	0	0	0.95705	1	10425	10425		5.7319	2.4505	1				9494	5989	5325	5362	9189	9189					0.21064644738953575
ELKLNIIKMR	10	Unmodified	_ELKLNIIKMR_					0	0	0			REV__SCN2B|p.G168Afs*10|2|0.2|ENSG00000149575|chr11:118167032-118167032|C/-|frameshift_variant	REV__SCN2B|p.G168Afs*10|2|0.2|ENSG00000149575|chr11:118167032-118167032|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	629.14404296875	2	629.389208	1256.76386	0.78848	0.00049626	0.88928	0.0005597	1.6778	0.001056	629.3890691403415	52.958	0.51385	52.958	52.69	53.204	0					16	9	3	0	0	0	0.88076	1	20252	20252		3.2813	1.7994	1	14356000	+		9495	12569	5326	5363	9190	9190					0.1457514441026433
ELKPLLLRLP	10	Unmodified	_ELKPLLLRLP_					0	0	0		ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	MSMS	HCT116MG_D190212_S1	1	596.3967895507812	2	596.394816	1190.77508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.73	1	43.73	43.23	44.23	0								0	0	0	0.95351	1	16529	16529		3.9444	0.66309	1				9496	2327	5327	5364	9191	9191					0.1873228977603958
ELKPQPMIKKA	11	Unmodified	_ELKPQPMIKKA_					0	0	0		nc|ENSG00000108924|Q16534-2|HLF;ENST00000570962.1_1_17:53345105-53398237:+|nuORF;ENSG00000108924|ENST00000226067|HLF	nc|ENSG00000108924|Q16534-2|HLF	nc|ENSG00000108924|Q16534-2|HLF	MULTI-MSMS	HCT116MG_D190212_S1	1	641.882080078125	2	641.881216	1281.74788	0.59286	0.00038054	1.3686	0.00087846	1.9614	0.001259	641.8816777933368	48.845	0.30836	48.845	48.666	48.974	0					8	5	2	0	0	0	0.73844	1	18632	18632		7.609	0	1	10871000			9497	2189	5328	5365	9192	9192					0.11827438173349947
ELKRIKTELMP	11	Unmodified	_ELKRIKTELMP_					0	0	0		tr|U7T428|U7T428_FUSNUglycerophosphodiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00232PE=4SV=1	tr|U7T428|U7T428_FUSNUglycerophosphodiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00232PE=4SV=1	tr|U7T428|U7T428_FUSNUglycerophosphodiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00232PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	679.8330688476562	2	679.39723	1356.77991	0.64701	0.00043958	1.185	0.00080508	1.832	0.0012447	679.398005754076	51.557	0.40668	51.557	51.4	51.807	0					10	7	2	0	0	0	0.36397	1	19694	19694		2.7352	0	1	11416000			9498	18615	5329	5366	9193	9193					0.1157880585649309
ELKRKKFF	8	Unmodified	_ELKRKKFF_					0	0	0			REV__tr|U7SFW9|U7SFW9_FUSNURNApolymerasesigma-70factor,ECFsubfamilyOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02263PE=3SV=1	REV__tr|U7SFW9|U7SFW9_FUSNURNApolymerasesigma-70factor,ECFsubfamilyOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02263PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	548.3446044921875	2	548.337301	1094.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.708	1	54.412	53.912	54.912	-0.29587								0	0	0	0.8837	1	20736	20736		8.5933	1.8701	1		+		9499	17664	5330	5367	9194	9194					0.11650605364911826
ELKRKKTV	8	Unmodified	_ELKRKKTV_					0	0	0			REV__ENST00000368298.2_1_1:156104977-156106341:+|nuORF	REV__ENST00000368298.2_1_1:156104977-156106341:+|nuORF	MSMS	HCT116MG_D190212_S1	1	501.3271179199219	2	501.326934	1000.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.975	1	48.975	48.475	49.475	0								0	0	0	0.8837	1	18650	18650		4.756	0	1		+		9500	12842	5331	5368	9195	9195					0.1390201498522856
ELKRLEEV	8	Unmodified	_ELKRLEEV_					0	0	0			REV__ENST00000499988.2_1_15:40986710-40986842:-|nuORF	REV__ENST00000499988.2_1_15:40986710-40986842:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	508.2919006347656	2	508.292756	1014.57096	0.15207	7.7296E-05	-0.77599	-0.00039443	-0.62392	-0.00031714	508.29225501627405	39.269	0.28625	39.269	39.111	39.398	0					14	6	3	0	0	0	0.026439	1	14706	14706		147.83	8.6927	1	74338000	+		9501	16110	5332	5369	9196	9196					0.06425725614724342
ELKRLEEV	8	Unmodified	_ELKRLEEV_					0	0	0			REV__ENST00000499988.2_1_15:40986710-40986842:-|nuORF	REV__ENST00000499988.2_1_15:40986710-40986842:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	508.2911071777344	2	508.292756	1014.57096	0.19799	0.00010064	-0.67969	-0.00034548	-0.4817	-0.00024485	508.29243547572287	39.471	0.25565	39.169	39.034	39.29	-0.30137					10	4	3	0	0	0	0.060005	1	14657	14657		112.59	1.3062	1	29527000	+		9502	16110	5332	5369	9197	9197					0.06425725614724342
ELKSHPFLPWV	11	Unmodified	_ELKSHPFLPWV_					0	0	0			REV__ENST00000407008.7_1_17:26369466-26369613:+|nuORF	REV__ENST00000407008.7_1_17:26369466-26369613:+|nuORF	MSMS	HCT116MG_D190212_S1	1	676.9945678710938	2	676.871705	1351.72886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.219	1	50.219	49.719	50.719	0								0	0	0	0.95196	1	19156	19156		5.2969	0.39987	1		+		9503	15417	5333	5370	9198	9198					0.06706224873937572
ELKSIVSQVKA	11	Unmodified	_ELKSIVSQVKA_					0	0	0			REV__ENST00000577226.5_1_17:27233817-27234084:-|nuORF	REV__ENST00000577226.5_1_17:27233817-27234084:-|nuORF	MSMS	HCT116MG_D190212_S3	3	601.3612060546875	2	601.36117	1200.70779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.164	1	57.894	57.394	58.394	-0.26932								0	0	0	0.95196	1	22120	22120		5.2969	1.3525	1		+		9504	16611	5334	5371	9199	9199					0.1154621477442106
ELKSLVVSI	9	Unmodified	_ELKSLVVSI_					0	0	0			REV__ENSG00000164142|ENST00000435205|FHIP1A	REV__ENSG00000164142|ENST00000435205|FHIP1A	MSMS	HCT116MG_D190212_S2	2	494.30780029296875	2	494.307875	986.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.527	1	53.337	52.837	53.837	-0.1894								0	0	0	0.76759	1	20587	20587		9.3831	1.473	1		+		9505	12984	5335	5372	9200	9200					0.10736084279915303
ELKVRLIKE	9	Unmodified	_ELKVRLIKE_					0	0	0			REV__nc|ENSG00000172466|P17028-2|ZNF24	REV__nc|ENSG00000172466|P17028-2|ZNF24	MSMS	HCT116MG_D190212_S3	3	564.3590698242188	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.694	1	48.378	47.878	48.878	-0.31596								0	0	0	0.76849	1	18321	18321		6.2058	0.9089	1		+		9506	13389	5336	5373	9201	9201					0.14910839845242663
ELKVSRTVSP	10	Unmodified	_ELKVSRTVSP_					0	0	0		SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant;SPEF2|p.I1348Nfs*12|1|0.34|ENSG00000152582|chr5:35773981-35773982|-/A|frameshift_variant;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;SPEF2|p.N1040Tfs*10|1|0.32|ENSG00000152582|chr5:35739972-35739972|A/-|frameshift_variant;nc|ENSG00000152582|Q9C093-3|SPEF2;SPEF2|p.M234*|1|0.13|ENSG00000152582|chr5:35646776-35646776|A/-|frameshift_variant;SPEF2|p.F41Lfs*5|1|0.07|ENSG00000152582|chr5:35628524-35628525|TG/-|frameshift_variant;ENST00000505088.1_1_5:35618099-35641794:+|nuORF;ENST00000505847.5_2_5:35618099-35643627:+|nuORF;SPEF2|p.K183Nfs*16|1|0.07|ENSG00000152582|chr5:35644485-35644485|A/-|frameshift_variant	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	557.9114990234375	2	558.324588	1114.63462	0.35395	0.00019762	0.615	0.00034337	0.96895	0.00054099	558.324824932717	54.065	0.57299	53.736	53.509	54.082	-0.32923					15	10	2	0	0	0	0.30868	1	20154	20154		7.609	5.5492	1	3574100			9507	4157	5337	5374	9202	9202					0.08189086051834238
ELKYAFLFLLP	11	Unmodified	_ELKYAFLFLLP_					0	0	0		ENST00000531844.5_1_1:207818578-207857361:+|nuORF	ENST00000531844.5_1_1:207818578-207857361:+|nuORF	ENST00000531844.5_1_1:207818578-207857361:+|nuORF	MSMS	HCT116MG_D190212_S1	1	676.9312133789062	2	677.394482	1352.77441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.028	1	54.028	53.528	54.528	0								0	0	0	0.95686	1	20707	20707		2.7352	0	1				9508	8626	5338	5375	9203	9203					0.1121345033632224
ELLEPRRRRLQ	11	Unmodified	_ELLEPRRRRLQ_					0	0	0		AluSz_dup98854|chr20:44349788-44350099:+|1.367513856940714|0.2321393134284999|2.56|473.0|2|1|sense	AluSz_dup98854|chr20:44349788-44350099:+|1.367513856940714|0.2321393134284999|2.56|473.0|2|1|sense	AluSz_dup98854|chr20:44349788-44350099:+|1.367513856940714|0.2321393134284999|2.56|473.0|2|1|sense	MSMS	HCT116MG_D190212_S1	1	733.4382934570312	2	733.439141	1464.86373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.457	1	14.457	13.957	14.957	0								0	0	0	0.96149	1	4733	4733		0.30703	0	1				9509	116	5339	5376	9204	9204					0.14989098068394924
ELLFQLVAP	9	Unmodified	_ELLFQLVAP_					0	0	0		ENST00000278836.9_1_11:61553611-61553815:+|nuORF	ENST00000278836.9_1_11:61553611-61553815:+|nuORF	ENST00000278836.9_1_11:61553611-61553815:+|nuORF	MSMS	HCT116MG_D190212_S1	1	515.300537109375	2	515.302593	1028.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.057	1	25.057	24.557	25.557	0								0	0	0	0.58443	1	8997	8997		24.674	6.5389	1				9510	6935	5340	5377	9205	9205					0.07748101625475101
ELLGPPAP	8	Unmodified	_ELLGPPAP_					0	0	0		nc|ENSG00000130675|P50219-2|MNX1;ENSG00000130675|ENST00000252971|MNX1	nc|ENSG00000130675|P50219-2|MNX1	nc|ENSG00000130675|P50219-2|MNX1	MULTI-MSMS	HCT116MG_D190212_S2	2	397.22607421875	2	397.226354	792.438155	0.073114	2.9043E-05	-0.13504	-5.3641E-05	-0.061925	-2.4598E-05	397.22619190967856	34.268	0.31141	34.093	33.916	34.227	-0.17512					13	5	3	0	0	0	0.62454	1	12728	12728		30.198	7.7457	1	67029000			9511	3092	5341	5378	9206	9206					0.033633259487032774
ELLGPPAP	8	Unmodified	_ELLGPPAP_					0	0	0		nc|ENSG00000130675|P50219-2|MNX1;ENSG00000130675|ENST00000252971|MNX1	nc|ENSG00000130675|P50219-2|MNX1	nc|ENSG00000130675|P50219-2|MNX1	MULTI-MSMS	HCT116MG_D190212_S2	2	793.4463500976562	1	793.445431	792.438155	0.9567	0.00075909	0.10691	8.4828E-05	1.0636	0.00084392	793.4453716461056	34.226	0.36331	34.051	33.812	34.175	-0.17512					11	6	3	0	0	0	0.2535	1	12746	12746		63.394	20.426	1	45542000			9512	3092	5341	5378	9207	9207					0.033633259487032774
ELLGPPAP	8	Unmodified	_ELLGPPAP_					0	0	0		nc|ENSG00000130675|P50219-2|MNX1;ENSG00000130675|ENST00000252971|MNX1	nc|ENSG00000130675|P50219-2|MNX1	nc|ENSG00000130675|P50219-2|MNX1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	793.445431	792.438155	0.65995	0.00052363	-0.48004	-0.00038089	0.1799	0.00014274	793.4448206486262	34.436	0.20806	34.142	33.975	34.184	-0.2942	0.045417	-0.00025404	NaN	63.394	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2399400			9513	3092	5341	5378							0.033633259487032774
ELLHLSPPS	9	Unmodified	_ELLHLSPPS_					0	0	0			REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	496.77423095703125	2	496.7742	991.533846	0.30387	0.00015095	0.36253	0.00018009	0.66639	0.00033105	496.77427960672776	43.291	0.26031	43.291	43.108	43.368	0					9	4	3	0	0	0	0.11731	1	16360	16360		54.774	0.94076	1	21070000	+		9514	10599	5342	5379	9208	9208					0.03774054068958321
ELLIYRKKYIL	11	Unmodified	_ELLIYRKKYIL_					0	0	0		SYCP2|p.S736L|1|0.37|ENSG00000196074|chr20:59892147-59892147|G/A|missense_variant	SYCP2|p.S736L|1|0.37|ENSG00000196074|chr20:59892147-59892147|G/A|missense_variant	SYCP2|p.S736L|1|0.37|ENSG00000196074|chr20:59892147-59892147|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	484.2586669921875	3	484.637667	1450.89117	0.13002	6.3011E-05	-0.027007	-1.3089E-05	0.10301	4.9922E-05	484.63761226206066	54.255	2.2654	54.066	52.293	54.559	-0.1894					61	43	2	0	0	0	0.36628	1	20468	20468		0.08335	0	1	47181000			9515	18246	5343	5380	9209	9209					0.183761885560898
ELLKGGVG	8	Unmodified	_ELLKGGVG_					0	0	0			REV__MLT1L_dup10991|chr19:48704452-48704884:-|1.6021649368149065|0.1256829385754321|3.67|401.0|7|2|sense	REV__MLT1L_dup10991|chr19:48704452-48704884:-|1.6021649368149065|0.1256829385754321|3.67|401.0|7|2|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	386.731689453125	2	386.731803	771.449054	-0.00050344	-1.947E-07	0.12212	4.7229E-05	0.12162	4.7035E-05	386.73178004911665	42.11	0.25959	42.042	41.861	42.12	-0.068199					6	4	2	0	0	0	0.6854	1	15943	15943		24.674	0	1	11943000	+		9516	17032	5344	5381	9210	9210					0.05418728323013511
ELLKNLDNESQ	11	Unmodified	_ELLKNLDNESQ_					0	0	0			REV__nc|ENSG00000126970|Q9NQZ6-2|ZC4H2	REV__nc|ENSG00000126970|Q9NQZ6-2|ZC4H2	MULTI-SECPEP	HCT116MG_D190212_S1	1	651.3286743164062	2	651.830431	1301.64631	0.83644	0.00054522	-1.6948	-0.0011047	-0.85835	-0.0005595	651.8292125108202	31.31	0.4164	31.31	31.18	31.596	0					10	7	2	0	0	0	0.36112	1	11526	11526		4.1895	0	1	11794000	+		9517	11850	5345	5382	9211	9211					0.007552382844778549
ELLRMSGAF	9	Unmodified	_ELLRMSGAF_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MSMS	HCT116MG_D190212_S4	4	512.2687377929688	2	512.268227	1022.5219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.285	1	46.914	46.414	47.414	-0.37038								0	0	0	0.76834	1	17486	17486		6.7232	0.96273	1				9518	2547	5346	5383	9212	9212					0.011541140541226014
ELLRVFRSGYK	11	Unmodified	_ELLRVFRSGYK_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10;DNAH10|p.P1206Lfs*12|1|0.08|ENSG00000197653|chr12:123819219-123819219|C/-|frameshift_variant;DNAH10|p.E1360*|1|0.18|ENSG00000197653|chr12:123830579-123830580|-/T|frameshift_variant;DNAH10|p.K1737Nfs*15|2|0.42|ENSG00000197653|chr12:123845799-123845799|A/-|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	HCT116MG_D190212_S1	1	683.8936157226562	2	684.393336	1366.77212	0.75629	0.0005176	1.0732	0.00073446	1.8294	0.0012521	684.3939137560835	52.306	0.25762	52.306	52.176	52.434	0					6	4	2	0	0	0	0.36617	1	20040	20040		0.23584	0	1	7665300			9519	6164	5347	5384	9213	9213					0.10340414651227547
ELLTGVGLEP	10	Unmodified	_ELLTGVGLEP_					0	0	0			REV__AUTS2|p.P257L|1|0.15|ENSG00000158321|chr7:70762897-70762897|C/T|missense_variant	REV__AUTS2|p.P257L|1|0.15|ENSG00000158321|chr7:70762897-70762897|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	514.2859497070312	2	514.28714	1026.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.771	1	31.501	31.001	32.001	-0.27028								0	0	0	0.90892	1	11620	11620		13.906	1.3745	1		+		9520	10019	5348	5385	9214	9214					0.047509035205848704
ELMKLKKKLV	10	Unmodified	_ELMKLKKKLV_					0	0	0			REV__NIN|p.N1391Kfs*8|1|0.03|ENSG00000100503|chr14:50756857-50756858|-/AGGAAAACAC|frameshift_variant	REV__NIN|p.N1391Kfs*8|1|0.03|ENSG00000100503|chr14:50756857-50756858|-/AGGAAAACAC|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	615.4041748046875	2	615.404327	1228.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.291	1	58.022	57.522	58.522	-0.26932								0	0	0	0.96521	1	22171	22171		1.3295	0.72803	1		+		9521	11091	5349	5386	9215	9215					0.1888550307544392
ELMKQWFQRWL	11	Unmodified	_ELMKQWFQRWL_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MSMS	HCT116MG_D190212_S2	2	782.9060668945312	2	782.908296	1563.80204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.018	1	52.828	52.328	53.328	-0.18922								0	0	0	0.95636	1	20380	20380		2.9952	0.49676	1		+		9522	12894	5350	5387	9216	9216					0.04269030324894629
ELNRHKKRH	9	Unmodified	_ELNRHKKRH_					0	0	0		ENSG00000283039|ENST00000634670|KLF18	ENSG00000283039|ENST00000634670|KLF18	ENSG00000283039|ENST00000634670|KLF18	MSMS	HCT116MG_D190212_S4	4	609.2064208984375	2	609.352337	1216.69012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.489	1	38.107	37.607	38.607	-0.38163								0	0	0	0.76973	1	14108	14108		1.8442	0.36234	1				9523	6700	5351	5388	9217	9217					0.09044357082780152
ELNSAAAL	8	Unmodified	_ELNSAAAL_					0	0	0		ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4	ENSG00000113430|ENST00000231357|IRX4	ENSG00000113430|ENST00000231357|IRX4	MULTI-MSMS	HCT116MG_D190212_S2	2	394.71112060546875	2	394.711068	787.407583	0.25367	0.00010013	-0.26099	-0.00010301	-0.0073105	-2.8855E-06	394.7108502432456	31.768	0.31061	31.519	31.354	31.665	-0.24883					7	5	2	0	0	0	0.61955	1	11745	11745		30.637	0.41173	1	21749000			9524	2387	5352	5389	9218	9218					0.005375475636697047
ELNSIGVIL	9	Unmodified	_ELNSIGVIL_					0	0	0		nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;ENST00000526574.1_1_11:68334490-68338573:+|nuORF	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2865905761719	2	479.2844	956.554247	0.36103	0.00017304	2.2169	0.0010625	2.5779	0.0012356	479.2863110951323	39.079	0.30925	38.995	38.807	39.116	-0.08358					8	5	2	0	0	0	0.43775	1	14698	14698		20.454	3.5113	1	52995000			9525	2233	5353	5390	9219	9219					0.07423224728779587
ELPALNKA	8	Unmodified	_ELPALNKA_					0	0	0			REV__ANKRD50|p.T448A|1|0.16|ENSG00000151458|chr4:124671935-124671935|T/C|missense_variant	REV__ANKRD50|p.T448A|1|0.16|ENSG00000151458|chr4:124671935-124671935|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	428.2491149902344	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.292	1	27.292	26.792	27.792	0								0	0	0	0.8837	1	9897	9897		5.2307	0	1		+		9526	9946	5354	5391	9220	9220					0.05310399868744753
ELPILGPWIP	10	Unmodified	_ELPILGPWIP_					0	0	0			REV__ENST00000379349.5_1_X:23693192-23697319:+|nuORF	REV__ENST00000379349.5_1_X:23693192-23697319:+|nuORF	MSMS	HCT116MG_D190212_S2	2	568.0438232421875	2	567.831517	1133.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.479	1	47.358	46.858	47.858	-0.12175								0	0	0	0.92272	1	18113	18113		10.824	0	1		+		9527	15257	5355	5392	9221	9221					0.08700363550906332
ELPPGAGL	8	Unmodified	_ELPPGAGL_					0	0	0		ENST00000537237.5_1_12:110017641-110029070:+|nuORF;ENSG00000110921|ENST00000228510|MVK	ENST00000537237.5_1_12:110017641-110029070:+|nuORF	ENST00000537237.5_1_12:110017641-110029070:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	377.2106628417969	2	377.210704	752.406855	-0.008878	-3.3489E-06	-0.091176	-3.4393E-05	-0.10005	-3.7742E-05	377.21064676678475	41.541	0.25568	41.473	41.345	41.601	-0.068199					6	4	2	0	0	0	0.76257	1	15731	15731		15.768	0	1	19827000			9528	2269	5356	5393	9222	9222					0.020747529146206034
ELQDEENSL	9	Unmodified	_ELQDEENSL_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.L531Ffs*34|1|0.13|ENSG00000144357|chr2:169905235-169905236|-/T|frameshift_variant;UBR3|p.L920Cfs*18|1|0.15|ENSG00000144357|chr2:169942585-169942585|T/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MSMS	HCT116MG_D190212_S4	4	538.7413330078125	2	538.740751	1075.46695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.715	1	44.341	43.841	44.841	-0.37326								0	0	0	0.76902	1	16482	16482		4.3292	0	1				9529	3860	5357	5394	9223	9223					-0.06776646003459064
ELQIGNPTP	9	Unmodified	_ELQIGNPTP_					0	0	0			REV__nc|ENSG00000164114|Q49MG5-2|MAP9	REV__nc|ENSG00000164114|Q49MG5-2|MAP9	MSMS	HCT116MG_D190212_S3	3	484.79229736328125	2	484.756007	967.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.567	1	36.266	35.766	36.766	-0.30113								0	0	0	0.41664	1	13516	13516		32.786	5.902	1		+		9530	12977	5358	5395	9224	9224					0.01241177172244079
ELQKKLSLLID	11	Unmodified	_ELQKKLSLLID_					0	0	0		ENSG00000011638|ENST00000233047|LDAF1;nc|ENSG00000011638|Q96B96-2|LDAF1	ENSG00000011638|ENST00000233047|LDAF1	ENSG00000011638|ENST00000233047|LDAF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	649.8983764648438	2	650.397753	1298.78095	0.6263	0.00040734	-0.95381	-0.00062036	-0.32752	-0.00021302	650.3968704757582	54.519	1.2796	54.33	53.687	54.967	-0.1894					47	24	3	0	0	0	0.36511	1	21005	21005		4.897	2.1618	1	31911000			9531	901	5359	5396	9225	9225					0.14351343497060043
ELQKNLFNI	9	Unmodified	_ELQKNLFNI_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40;REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	559.8135986328125	2	559.813856	1117.61316	0.36866	0.00020638	-0.88292	-0.00049427	-0.51427	-0.00028789	559.8134254348288	52.87	0.30809	52.681	52.501	52.809	-0.18922					7	5	2	0	0	0	0.041798	1	20348	20348		78.728	2.9672	1	16249000	+		9532	10116;16580	5360	5397	9226	9226					0.05905701023107213
ELQRLSPLP	9	Unmodified	_ELQRLSPLP_					0	0	0		nc|ENSG00000096080|Q9NVS2-2|MRPS18A	nc|ENSG00000096080|Q9NVS2-2|MRPS18A	nc|ENSG00000096080|Q9NVS2-2|MRPS18A	MULTI-SECPEP	HCT116MG_D190212_S4	4	527.2456665039062	2	526.808574	1051.60259	0.38275	0.00020164	-0.13115	-6.909E-05	0.2516	0.00013255	526.8084932934898	29.918	1.0916	29.561	28.869	29.961	-0.3571					29	20	2	0	0	0	0.17558	1	10897	10897		34.402	15.04	1	3387000			9533	9402	5361	5398	9227	9227					0.07885718368675043
ELQRSLEA	8	Unmodified	_ELQRSLEA_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2537536621094	2	473.253631	944.49271	-0.095759	-4.5318E-05	-0.33355	-0.00015785	-0.4293	-0.00020317	473.25336266892936	30.195	0.30954	29.91	29.718	30.028	-0.28453					10	5	3	0	0	0	0.22822	1	11091	11091		68.081	3.8444	1	37442000	+		9534	10417	5362	5399	9228	9228					0.018242930294718462
ELQRSLEA	8	Unmodified	_ELQRSLEA_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2534484863281	2	473.253631	944.49271	0.24186	0.00011446	-0.21342	-0.000101	0.028441	1.346E-05	473.2534217552145	30.241	0.26073	29.991	29.809	30.069	-0.24946					8	4	2	0	0	0	0.22822	1	11019	11019		68.081	0	1	26084000	+		9535	10417	5362	5399	9229	9229					0.018242930294718462
ELQRSLEA	8	Unmodified	_ELQRSLEA_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	473.253631	944.49271	0.20494	9.699E-05	-0.81282	-0.00038467	-0.60788	-0.00028768	473.2532053771244	29.782	0.25966	29.782	29.581	29.841	0	-0.11281	-0.00047576	NaN	68.081	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4415900	+		9536	10417	5362	5399							0.018242930294718462
ELQRSLEA	8	Unmodified	_ELQRSLEA_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	473.253631	944.49271	-0.095759	-4.5318E-05	-0.33355	-0.00015785	-0.4293	-0.00020317	473.25336266892936	30.195	0.30954	29.91	29.718	30.028	-0.28453	0.015769	-2.2122E-05	NaN	68.081	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37442000	+		9537	10417	5362	5399							0.018242930294718462
ELQRSLEA	8	Unmodified	_ELQRSLEA_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	473.253631	944.49271	0.24186	0.00011446	-0.21342	-0.000101	0.028441	1.346E-05	473.2534217552145	30.241	0.26073	29.991	29.809	30.069	-0.24946	0.097037	9.1575E-05	NaN	68.081	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26084000	+		9538	10417	5362	5399							0.018242930294718462
ELRAEIARLK	10	Unmodified	_ELRAEIARLK_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;KIF16B|p.F1272Sfs*3|1|0.36|ENSG00000089177|chr20:16273392-16273392|A/-|frameshift_variant;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MSMS	HCT116MG_D190212_S3	3	599.8688354492188	2	599.866954	1197.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.619	1	48.303	47.803	48.803	-0.31596								0	0	0	0.95648	1	18291	18291		3.2813	0	1				9539	1520	5363	5400	9230	9230					0.1284045658840114
ELRASSIYSA	10	Unmodified	_ELRASSIYSA_					0	0	0			REV__ENST00000525366.5_1_11:61112846-61113972:+|nuORF	REV__ENST00000525366.5_1_11:61112846-61113972:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	548.7855224609375	2	548.785296	1095.55604	0.56448	0.00030978	-0.25986	-0.00014261	0.30462	0.00016717	548.7850241995	20.216	0.25973	20.014	19.885	20.144	-0.20133					7	4	2	0	0	0	0.69965	1	6929	6929		20.415	1.0526	1	9951800	+		9540	16271	5364	5401	9231	9231					0.012082337467290927
ELREQLTV	8	Unmodified	_ELREQLTV_					0	0	0			REV__ENSG00000167208|ENST00000330943|SNX20	REV__ENSG00000167208|ENST00000330943|SNX20	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2771911621094	2	494.277106	986.53966	0.22662	0.00011201	0.11964	5.9133E-05	0.34625	0.00017114	494.27709519986286	38.749	0.26208	38.665	38.492	38.754	-0.084618					7	4	2	0	0	0	0.63727	1	14595	14595		29.082	2.8134	1	13622000	+		9541	13140	5365	5402	9232	9232					0.04585152580625618
ELRFKQYLRNP	11	Unmodified	_ELRFKQYLRNP_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;SHC1|p.V363Wfs*2|1|0.31|ENSG00000160691|chr1:154966414-154966414|C/-|frameshift_variant;nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MULTI-MSMS	HCT116MG_D190212_S3	3	488.6086730957031	3	488.60877	1462.80448	0.20764	0.00010145	-0.26885	-0.00013136	-0.061211	-2.9908E-05	488.60864975862495	42.682	0.20824	42.379	42.249	42.457	-0.30352					6	3	2	0	0	0	0.74191	1	15922	15922		4.1166	2.0327	1	3805200			9542	4459	5366	5403	9233	9233					0.09159202054229354
ELRFRQRQMEV	11	Unmodified	_ELRFRQRQMEV_					0	0	0			REV__ENSG00000162722|ENST00000366481|TRIM58	REV__ENSG00000162722|ENST00000366481|TRIM58	MSMS	HCT116MG_D190212_S2	2	746.3935546875	2	746.396084	1490.77762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.663	1	25.294	24.794	25.794	-0.36914								0	0	0	0.94416	1	9251	9251		9.3831	1.2276	1		+		9543	12890	5367	5404	9234	9234					0.05185770171397053
ELRGNLTGAP	10	Unmodified	_ELRGNLTGAP_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MSMS	HCT116MG_D190212_S3	3	514.2798461914062	2	514.28018	1026.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.736	1	25.608	25.108	26.108	-0.12795								0	0	0	0.87399	1	9202	9202		19.257	1.122	1				9544	5113	5368	5405	9235	9235					0.033596708121422125
ELRICYRWWYV	11	Unmodified	_ELRICYRWWYV_					0	0	0			REV__ENSG00000004142|ENST00000540200|POLDIP2	REV__ENSG00000004142|ENST00000540200|POLDIP2	MSMS	HCT116MG_D190212_S4	4	793.8997802734375	2	793.900471	1585.78639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.765	1	41.389	40.889	41.889	-0.37637								0	0	0	0.95954	1	15326	15326		1.3295	0.13619	1		+		9545	10466	5369	5406	9236	9236					0.016927438078482737
ELRILALDFNK	11	Unmodified	_ELRILALDFNK_					0	0	0		ENSG00000204950|ENST00000378075|LRRC10B	ENSG00000204950|ENST00000378075|LRRC10B	ENSG00000204950|ENST00000378075|LRRC10B	MSMS	HCT116MG_D190212_S3	3	666.3911743164062	2	666.387719	1330.76089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.989	1	41.687	41.187	42.187	-0.30257								0	0	0	0.94538	1	15628	15628		8.7454	0.58988	1				9546	6357	5370	5407	9237	9237					0.10873592557072698
ELRKNWEEWRA	11	Unmodified	_ELRKNWEEWRA_					0	0	0			REV__ENSG00000140057|ENST00000267584|AK7	REV__ENSG00000140057|ENST00000267584|AK7	MSMS	HCT116MG_D190212_S4	4	758.8857421875	2	758.886407	1515.75826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.07	1	40.692	40.192	41.192	-0.37732								0	0	0	0.95954	1	15091	15091		1.3295	0	1		+		9547	12285	5371	5408	9238	9238					0.02101137152112642
ELRKRWIHQLK	11	Unmodified	_ELRKRWIHQLK_					0	0	0		BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant;ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK	BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant	BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	753.95263671875	2	753.954427	1505.8943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.281	1	47.281	46.781	47.781	0								0	0	0	0.95686	1	17961	17961		2.7352	1.5419	1				9548	286	5372	5409	9239	9239					0.16158876453437188
ELRLQPKKRKF	11	Unmodified	_ELRLQPKKRKF_					0	0	0			REV__ENSG00000203760|ENST00000368328|CENPW	REV__ENSG00000203760|ENST00000368328|CENPW	MSMS	HCT116MG_D190212_S1	1	722.0643310546875	2	721.951353	1441.88815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.976	1	24.976	24.476	25.476	0								0	0	0	0.95731	1	8964	8964		2.4985	1.3051	1		+		9549	14175	5373	5410	9240	9240					0.1848835822190722
ELRPQEAP	8	Unmodified	_ELRPQEAP_					0	0	0			REV__ENSG00000165355|ENST00000298097|FBXO33	REV__ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	HCT116MG_D190212_S2	2	470.7400817871094	2	470.248349	938.482145	0.064541	3.035E-05	0.027888	1.3114E-05	0.092429	4.3464E-05	470.24834816024185	18.084	0.62677	17.728	17.597	18.224	-0.35647					16	11	2	0	0	0	0.23035	1	6180	6180		47.749	11.622	1	7695500	+		9550	13051	5374	5411	9241	9241					0.010443103750503724
ELRRLFRERY	10	Unmodified	_ELRRLFRERY_					0	0	0		ENSG00000184292|ENST00000371225|TACSTD2	ENSG00000184292|ENST00000371225|TACSTD2	ENSG00000184292|ENST00000371225|TACSTD2	MULTI-MSMS	HCT116MG_D190212_S1	1	719.4068603515625	2	719.407309	1436.80007	0.91392	0.00065748	-0.97616	-0.00070226	-0.062241	-4.4777E-05	719.406577378932	28.087	0.36442	28.087	27.956	28.321	0					14	6	4	0	0	0	0.8224	1	10222	10222		10.151	0.6066	1	57608000			9551	5764	5375	5412	9242	9242					0.09913737631313779
ELRRLKQTKDP	11	Unmodified	_ELRRLKQTKDP_					0	0	0		nc|ENSG00000120370|Q5T7V8-2|GORAB;ENSG00000120370|ENST00000367763|GORAB	nc|ENSG00000120370|Q5T7V8-2|GORAB	nc|ENSG00000120370|Q5T7V8-2|GORAB	MSMS	HCT116MG_D190212_S4	4	692.4075927734375	2	692.406975	1382.7994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.024	1	52.689	52.189	53.189	-0.33546								0	0	0	0.95581	1	19785	19785		3.2813	0	1				9552	2695	5376	5413	9243	9243					0.12330898191612505
ELRRLKQTKDP	11	Unmodified	_ELRRLKQTKDP_					0	0	0		nc|ENSG00000120370|Q5T7V8-2|GORAB;ENSG00000120370|ENST00000367763|GORAB	nc|ENSG00000120370|Q5T7V8-2|GORAB	nc|ENSG00000120370|Q5T7V8-2|GORAB	MSMS	HCT116MG_D190212_S4	4	692.4080200195312	2	692.406975	1382.7994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.256	1	53.932	53.432	54.432	-0.32349								0	0	0	0.95581	1	20281	20281		3.2813	0	1				9553	2695	5376	5413	9244	9244					0.12330898191612505
ELRRLMAK	8	Unmodified	_ELRRLMAK_					0	0	0		nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2;ENST00000493998.1_1_7:1468401-1477228:-|nuORF;ENST00000496184.1_1_7:1477093-1477677:-|nuORF;ENST00000479007.5_1_7:1474234-1478659:-|nuORF;nc|ENSG00000164877|Q8IY33-3|MICALL2;ENST00000467394.5_1_7:1474234-1480903:-|nuORF;ENST00000472100.5_1_7:1474569-1480903:-|nuORF	nc|ENSG00000164877|Q8IY33-5|MICALL2	nc|ENSG00000164877|Q8IY33-5|MICALL2	MULTI-SECPEP	HCT116MG_D190212_S3	3	508.7729797363281	2	508.805311	1015.59607	0.34056	0.00017328	-4.0528	-0.0020621	-3.7122	-0.0018888	509.30515791155443	29.45	0.20849	29.213	29.083	29.292	-0.23655					5	3	2	0	0	0	0.31097	1	10681	10681		3.9444	0	1	1749100			9554	4727	5377	5414	9245	9245					0.08889501936300803
ELRRWWLGHQR	11	Unmodified	_ELRRWWLGHQR_					0	0	0		ENST00000552885.2_1_12:80328793-80329330:+|nuORF	ENST00000552885.2_1_12:80328793-80329330:+|nuORF	ENST00000552885.2_1_12:80328793-80329330:+|nuORF	MSMS	HCT116MG_D190212_S1	1	512.94970703125	3	512.948009	1535.8222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.479	1	50.479	49.979	50.979	0								0	0	0	0.9598	1	19262	19262		0.40827	0	1				9555	8767	5378	5415	9246	9246					0.0757196209972335
ELRTVTEKI	9	Unmodified	_ELRTVTEKI_					0	0	0		nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	MULTI-SECPEP	HCT116MG_D190212_S4	4	544.8096923828125	2	544.819138	1087.62372	0.53142	0.00028953	-0.19598	-0.00010677	0.33544	0.00018275	544.8190414047666	40.55	0.20023	40.172	40.034	40.234	-0.37828					5	3	2	0	0	0	0.23771	1	14828	14828		10.074	10.074	1	2382700			9556	9465	5379	5416	9247	9247					0.08341683677554101
ELRTVTEKI	9	Unmodified	_ELRTVTEKI_					0	0	0		nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	MULTI-MATCH	HCT116MG_D190212_S3	3		2	544.819138	1087.62372	0.41206	0.0002245	0.52656	0.00028688	0.93862	0.00051138	545.321021426296	40.414	0.20778	40.113	40.007	40.215	-0.30161	-0.029678	0.00042976	NaN	10.074	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2481500			9557	9465	5379	5416							0.08341683677554101
ELRYREFR	8	Unmodified	_ELRYREFR_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	HCT116MG_D190212_S2	2	389.5437927246094	3	390.21224	1167.61489	0.099288	3.8744E-05	0.25344	9.8896E-05	0.35273	0.00013764	390.2123018472275	23.669	0.26032	23.286	23.195	23.456	-0.38324					8	4	3	0	0	0	0.3221	1	8466	8466		13.042	13.042	1	11165000			9558	1018	5380	5417	9248	9248					0.03778754831705555
ELSAHYYKEVY	11	Unmodified	_ELSAHYYKEVY_					0	0	0			REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13	REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13	MSMS	HCT116MG_D190212_S3	3	701.3381958007812	2	701.337892	1400.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.031	1	40.729	40.229	41.229	-0.30185								0	0	0	0.94538	1	15251	15251		8.7454	2.5396	1		+		9559	14084	5381	5418	9249	9249					-0.02307269847506177
ELSCITSI	8	Unmodified	_ELSCITSI_					0	0	0			REV__nc|ENSG00000196510|Q9UJX3-2|ANAPC7	REV__nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MSMS	HCT116MG_D190212_S3	3	433.2192687988281	2	433.220411	864.426269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.143	1	26.974	26.474	27.474	-0.16933								0	0	0	0.77419	1	9769	9769		24.674	3.8027	1		+		9560	14031	5382	5419	9250	9250					-0.011366588567852887
ELSDQVYLVRQ	11	Unmodified	_ELSDQVYLVRQ_					0	0	0			REV__ENSG00000085377|ENST00000652536|PREP	REV__ENSG00000085377|ENST00000652536|PREP	MSMS	HCT116MG_D190212_S2	2	675.3563232421875	2	675.356616	1348.69868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.398	1	45.306	44.806	45.806	-0.092472								0	0	0	0.92235	1	17263	17263		17.113	4.8722	1		+		9561	10920	5383	5420	9251	9251					0.038278214180763825
ELSDYIHPV	9	Unmodified	_ELSDYIHPV_					0	0	0		CON__P00735	CON__P00735	CON__P00735	MSMS	HCT116MG_D190212_S2	2	536.7692260742188	2	536.769114	1071.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.925	1	44.837	44.337	45.337	-0.087688								0	0	0	0.11425	1	17072	17072		53.576	11.481	1			+	9562	543	5384	5421	9252	9252					-0.009225536563008063
ELSELAKAL	9	Unmodified	_ELSELAKAL_					0	0	0			REV__ENSG00000126001|ENST00000397527|CEP250	REV__ENSG00000126001|ENST00000397527|CEP250	MSMS	HCT116MG_D190212_S1	1	487.28167724609375	2	487.281857	972.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.274	1	45.274	44.774	45.774	0								0	0	0	0.61599	1	17149	17149		23.148	1.4018	1		+		9563	11829	5385	5422	9253	9253					0.061789208661252815
ELSFMAAQRNY	11	Unmodified	_ELSFMAAQRNY_					0	0	0		CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant;CHD9|p.R2632Dfs*28|1|0.35|ENSG00000177200|chr16:53324090-53324090|G/-|frameshift_variant;CHD9|p.M2707Tfs*40|1|0.1|ENSG00000177200|chr16:53324320-53324321|-/C|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant	CHD9|p.R2541Kfs*9|1|0.11|ENSG00000177200|chr16:53318242-53318243|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	665.3187255859375	2	665.316437	1328.61832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.04	1	34.882	34.382	35.382	-0.15834								0	0	0	0.94538	1	13057	13057		8.7454	1.1365	1				9564	433	5386	5423	9254	9254					-0.03284363176589977
ELSLGSAYQA	10	Unmodified	_ELSLGSAYQA_					0	0	0		APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant;APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant;APOB|p.Y2149Vfs*2|2|0.29|ENSG00000084674|chr2:21010424-21010425|-/T|frameshift_variant;APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	519.7589721679688	2	519.758746	1037.50294	0.3365	0.0001749	0.058363	3.0335E-05	0.39486	0.00020523	519.7587217333769	33.464	0.30664	33.174	33.049	33.356	-0.29013					9	5	2	0	0	0	0.65652	1	12286	12286		24.021	2.4836	1	17236000			9565	161	5387	5424	9255	9255					-0.014311440359506378
ELSLVRVQRR	10	Unmodified	_ELSLVRVQRR_					0	0	0		ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	MULTI-MSMS	HCT116MG_D190212_S4	4	628.3839721679688	2	628.383303	1254.75205	0.44261	0.00027813	-0.047601	-2.9912E-05	0.395	0.00024821	628.3831840539183	54.397	1.6674	54.074	53.463	55.13	-0.32348					43	31	2	0	0	0	0.88823	1	20286	20286		1.4819	0.28856	1	2278300			9566	6268	5388	5425	9256	9256					0.13486663711250912
ELSNWGRVI	9	Unmodified	_ELSNWGRVI_					0	0	0			REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|34|3|sense	REV__THE1D-int_dup348|chr2:240633210-240634743:+|3.062994120509857|0.4818669853647762|2.67|482.0|34|3|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	537.290771484375	2	537.290548	1072.56654	0.46826	0.00025159	0.15876	8.5298E-05	0.62702	0.00033689	537.2902276429884	51.557	0.30864	51.374	51.218	51.527	-0.18368					9	5	3	0	0	0	0.27446	1	19803	19803		29.082	0	1	14009000	+		9567	17634	5389	5426	9257	9257					0.03316261191821468
ELSRKPHVVI	10	Unmodified	_ELSRKPHVVI_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601803.5_1_19:19032626-19032992:+|nuORF;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;DDX49|p.M267Ifs*15|1|0.15|ENSG00000105671|chr19:18924257-18924257|G/-|frameshift_variant	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MSMS	HCT116MG_D190212_S1	1	589.35595703125	2	589.356222	1176.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.97	1	28.97	28.47	29.47	0								0	0	0	0.92272	1	10571	10571		10.824	0	1				9568	2025	5390	5427	9258	9258					0.11661071559728953
ELSRLALKHKT	11	Unmodified	_ELSRLALKHKT_					0	0	0		nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172	nc|ENSG00000138002|Q9UG01-2|IFT172	nc|ENSG00000138002|Q9UG01-2|IFT172	MULTI-MSMS	HCT116MG_D190212_S2	2	648.393310546875	2	648.393336	1294.77212	0.7493	0.00048584	-0.63737	-0.00041327	0.11193	7.2576E-05	648.3929979407596	56.039	0.46206	55.856	55.693	56.155	-0.18356					15	8	3	0	0	0	0.74191	1	21635	21635		5.7319	0	1	17390000			9569	3523	5391	5428	9259	9259					0.13652414651210165
ELSRRHPRLQD	11	Unmodified	_ELSRRHPRLQD_					0	0	0		ENST00000295190.8_1_2:230924004-230933525:-|nuORF	ENST00000295190.8_1_2:230924004-230933525:-|nuORF	ENST00000295190.8_1_2:230924004-230933525:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	703.8848266601562	2	703.884198	1405.75384	0.75904	0.00053428	0.084727	5.9638E-05	0.84377	0.00059392	703.8841539265657	21.645	0.20853	21.645	21.489	21.698	0					6	3	2	0	0	0	0.39766	1	7640	7640		55.235	11.253	1	4975000			9570	6972	5392	5429	9260	9260					0.06719672729218473
ELSSVKRSYIS	11	Unmodified	_ELSSVKRSYIS_					0	0	0		ENST00000608637.1_1_10:46221881-46222187:-|nuORF	ENST00000608637.1_1_10:46221881-46222187:-|nuORF	ENST00000608637.1_1_10:46221881-46222187:-|nuORF	MSMS	HCT116MG_D190212_S1	1	634.8435668945312	2	634.845884	1267.67722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.092	1	20.092	19.592	20.592	0								0	0	0	0.93626	1	7004	7004		17.113	8.3675	1				9571	9128	5393	5430	9261	9261					0.054084363893935006
ELSSWAWLTDL	11	Unmodified	_ELSSWAWLTDL_					0	0	0			REV__nc|ENSG00000006283|O43497-28|CACNA1G	REV__nc|ENSG00000006283|O43497-28|CACNA1G	MSMS	HCT116MG_D190212_S1	1	660.82861328125	2	660.82716	1319.63977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.155	1	51.155	50.655	51.655	0								0	0	0	0.9465	1	19537	19537		8.1555	0.54658	1		+		9572	17064	5394	5431	9262	9262					-0.007266548762572711
ELSWGQSPGQ	10	Unmodified	_ELSWGQSPGQ_					0	0	0		ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	MULTI-MSMS	HCT116MG_D190212_S4	4	544.7544555664062	2	544.753995	1087.49344	0.47256	0.00025743	-0.22921	-0.00012487	0.24334	0.00013256	544.7537947886508	29.876	1.0916	29.519	28.817	29.909	-0.3571					39	20	3	0	0	0	0.59588	1	10676	10676		28.495	0.86571	1	15204000			9573	5671	5395	5432	9263	9263					-0.04680912321464348
ELSWGQSPGQ	10	Unmodified	_ELSWGQSPGQ_					0	0	0		ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	544.753995	1087.49344	0.59491	0.00032408	-0.25201	-0.00013728	0.3429	0.0001868	544.753885208698	29.794	0.99919	29.558	28.927	29.926	-0.23655	0.019375	-1.1948E-05	NaN	28.495	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12645000			9574	5671	5395	5432							-0.04680912321464348
ELSYVLEKLS	10	Unmodified	_ELSYVLEKLS_					0	0	0			REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	REV__tr|U7SMV2|U7SMV2_FUSNUMobA/MobLproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01839PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	590.4114990234375	2	590.826629	1179.63871	0.67895	0.00040114	0.078349	4.6291E-05	0.7573	0.00044743	590.826614367509	57.308	0.15588	57.129	56.999	57.155	-0.17904					4	2	2	0	0	0	0.30526	1	22097	22097		6.2058	0.9089	1	5921600	+		9575	17730	5396	5433	9264	9264					0.05607130754879108
ELTCDCSF	8	Unmodified	_ELTCDCSF_					0	0	0			REV__ENST00000517465.1_1_8:103270587-103274193:-|nuORF	REV__ENST00000517465.1_1_8:103270587-103274193:-|nuORF	MSMS	HCT116MG_D190212_S1	1	459.1724853515625	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.697	1	63.697	63.197	64.197	0								0	0	0	0.8837	1	24605	24605		0.69038	0	1		+		9576	16214	5397	5434	9265	9265					-0.13085755039321612
ELTDLKLQL	9	Unmodified	_ELTDLKLQL_					0	0	0		ENST00000548908.2_1_12:80173092-80180670:-|nuORF;ENST00000550903.5_1_12:80169711-80183436:-|nuORF;nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	ENST00000548908.2_1_12:80173092-80180670:-|nuORF	ENST00000548908.2_1_12:80173092-80180670:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	536.8158569335938	2	536.816064	1071.61758	0.37541	0.00020153	0.55091	0.00029573	0.92632	0.00049726	536.8159117712091	49.22	0.25276	49.066	48.935	49.187	-0.15405					9	4	3	0	0	0	0.11023	1	18845	18845		56.177	0	1	60934000			9577	1098	5398	5435	9266	9266					0.08463165446005405
ELTDQKNWFNL	11	Unmodified	_ELTDQKNWFNL_					0	0	0			REV__nc|ENSG00000101057|P10244-2|MYBL2	REV__nc|ENSG00000101057|P10244-2|MYBL2	MSMS	HCT116MG_D190212_S1	1	704.3466796875	2	704.348791	1406.68303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.795	1	21.795	21.295	22.295	0								0	0	0	0.80071	1	7685	7685		32.786	5.1569	1		+		9578	11112	5399	5436	9267	9267					-0.004044650989499132
ELTEELLEP	9	Unmodified	_ELTEELLEP_					0	0	0			REV__tr|U7SU39|U7SU39_FUSNUN5-carboxyaminoimidazoleribonucleotidemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purEPE=3SV=1	REV__tr|U7SU39|U7SU39_FUSNUN5-carboxyaminoimidazoleribonucleotidemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purEPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	358.1856384277344	3	358.185134	1071.53357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.984	1	26.984	26.484	27.484	0								0	0	0	0.74436	1	9773	9773		11.495	2.7493	1		+		9579	17816	5400	5437	9268	9268					0.0006658955844613956
ELTEVLNDPN	10	Unmodified	_ELTEVLNDPN_					0	0	0		ENSG00000152213|ENST00000282026|ARL11	ENSG00000152213|ENST00000282026|ARL11	ENSG00000152213|ENST00000282026|ARL11	MSMS	HCT116MG_D190212_S3	3	572.2804565429688	2	572.280043	1142.54553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.267	1	26.118	25.618	26.618	-0.14924								0	0	0	0.86501	1	9416	9416		20.415	0	1				9580	4137	5401	5438	9269	9269					-0.020037936983499094
ELTGFLSLCL	10	Unmodified	_ELTGFLSLCL_					0	0	0		nc|ENSG00000124256|Q9H171-5|ZBP1;ENST00000480037.1_1_20:56191111-56195351:-|nuORF;ENST00000461547.5_1_20:56191111-56191654:-|nuORF	nc|ENSG00000124256|Q9H171-5|ZBP1	nc|ENSG00000124256|Q9H171-5|ZBP1	MSMS	HCT116MG_D190212_S3	3	548.2904052734375	2	548.291368	1094.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.808	1	32.523	32.023	33.023	-0.28511								0	0	0	0.94107	1	12038	12038		6.7232	0.96273	1				9581	8058	5402	5439	9270	9270					0.02468134165542324
ELTLNEVIYF	10	Unmodified	_ELTLNEVIYF_					0	0	0		ENST00000360635.7_1_2:9546754-9546904:-|nuORF	ENST00000360635.7_1_2:9546754-9546904:-|nuORF	ENST00000360635.7_1_2:9546754-9546904:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	620.8272094726562	2	620.826629	1239.63871	0.51813	0.00032167	0.22161	0.00013758	0.73975	0.00045925	621.3283619663969	57.645	0.20704	57.645	57.516	57.723	0					8	3	3	0	0	0	0.68623	1	22203	22203		21.537	2.175	1	15084000			9582	7353	5403	5440	9271	9271					0.028471307548443292
ELTNMIFPPI	10	Unmodified	_ELTNMIFPPI_					0	0	0			REV__ENST00000507823.5_1_5:174919260-174949462:+|nuORF	REV__ENST00000507823.5_1_5:174919260-174949462:+|nuORF	MSMS	HCT116MG_D190212_S3	3	587.8133544921875	2	587.812467	1173.61038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.017	1	42.713	42.213	43.213	-0.30472								0	0	0	0.92917	1	16043	16043		9.3831	2.0939	1		+		9583	13007	5404	5441	9272	9272					0.030521095739231896
ELTWAQAQPSG	11	Unmodified	_ELTWAQAQPSG_					0	0	0			REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant	REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	595.250732421875	2	594.288202	1186.56185	0.764	0.00045403	-0.20902	-0.00012422	0.55498	0.00032982	594.2880192825822	38.58	1.0055	38.198	37.634	38.64	-0.38163					59	21	4	0	0	0	0.70377	1	14161	14161		20.415	1.0526	1	39463000	+		9584	11768	5405	5442	9273	9273					-0.023966677416410676
ELVCHLLAE	9	Unmodified	_ELVCHLLAE_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MSMS	HCT116MG_D190212_S4	4	513.767822265625	2	513.76806	1025.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.719	1	50.364	49.864	50.864	-0.35483								0	0	0	0.67173	1	18853	18853		20.454	2.3073	1		+		9585	11326	5406	5443	9274	9274					0.009826943342659433
ELVIHDRFIVE	11	Unmodified	_ELVIHDRFIVE_					0	0	0			REV__ENST00000527754.1_1_11:129698120-129727360:+|nuORF	REV__ENST00000527754.1_1_11:129698120-129727360:+|nuORF	MSMS	HCT116MG_D190212_S3	3	685.376953125	2	685.377352	1368.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.546	1	42.242	41.742	42.742	-0.30352								0	0	0	0.95196	1	15852	15852		5.2969	0	1		+		9586	12608	5407	5444	9275	9275					0.07053002177394774
ELVKIRMKL	9	Unmodified	_ELVKIRMKL_					0	0	0			REV__TRIP11|p.E425K|1|0.08|ENSG00000100815|chr14:92011027-92011027|C/T|missense_variant	REV__TRIP11|p.E425K|1|0.08|ENSG00000100815|chr14:92011027-92011027|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	565.7481079101562	2	565.359919	1128.70529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.433	1	57.157	56.657	57.657	-0.27604								0	0	0	0.76948	1	21826	21826		4.756	0	1		+		9587	18016	5408	5445	9276	9276					0.14608087835767947
ELVQESRPW	9	Unmodified	_ELVQESRPW_					0	0	0			REV__RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant	REV__RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	572.2929077148438	2	572.293288	1142.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.311	1	29.089	28.589	29.589	-0.22195								0	0	0	0.71969	1	10643	10643		18.135	2.2878	1		+		9588	17477	5409	5446	9277	9277					0.006439399836381199
ELYCSTSSAP	10	Unmodified	_ELYCSTSSAP_					0	0	0			REV__nc|ENSG00000140465|P04798-2|CYP1A1	REV__nc|ENSG00000140465|P04798-2|CYP1A1	MSMS	HCT116MG_D190212_S4	4	529.2291870117188	2	529.228965	1056.44338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.588	1	37.204	36.704	37.704	-0.3839								0	0	0	0.92272	1	13800	13800		10.824	2.9138	1		+		9589	12295	5410	5447	9278	9278					-0.08258783041628703
ELYLRPLRR	9	Unmodified	_ELYLRPLRR_					0	0	0		DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant;DNAH11|p.A2559Sfs*4|1|0.42|ENSG00000105877|chr7:21738723-21738724|-/A|frameshift_variant;DNAH11|p.L3180Sfs*6|1|0.05|ENSG00000105877|chr7:21784481-21784482|-/CAGA|frameshift_variant;DNAH11|p.E3097Nfs*4|1|0.21|ENSG00000105877|chr7:21773946-21773946|A/-|frameshift_variant;DNAH11|p.N3090Kfs*2|1|0.09|ENSG00000105877|chr7:21773928-21773929|-/A|frameshift_variant;DNAH11|p.S2374Qfs*2|1|0.14|ENSG00000105877|chr7:21717910-21717911|-/C|frameshift_variant;DNAH11|p.W2255Mfs*9|1|0.04|ENSG00000105877|chr7:21710627-21710628|-/A|frameshift_variant;DNAH11|p.N2201Kfs*6|1|0.04|ENSG00000105877|chr7:21707754-21707755|-/AGTAAAAGATTTC|frameshift_variant;DNAH11|p.C1849Sfs*8|1|0.05|ENSG00000105877|chr7:21683868-21683869|-/CTAAAATTCTCATAAATAG|frameshift_variant;DNAH11|p.K1250Nfs*43|1|0.63|ENSG00000105877|chr7:21606522-21606522|A/-|frameshift_variant;DNAH11|p.C1251Mfs*5|1|0.41|ENSG00000105877|chr7:21606521-21606522|-/A|frameshift_variant;DNAH11|p.Q945Kfs*4|1|0.32|ENSG00000105877|chr7:21599946-21599946|T/-|frameshift_variant;DNAH11|p.N833Tfs*2|1|0.17|ENSG00000105877|chr7:21591404-21591404|A/-|frameshift_variant;DNAH11|p.K873Nfs*4|1|0.31|ENSG00000105877|chr7:21591523-21591523|A/-|frameshift_variant;DNAH11|p.L441Ifs*25|1|0.26|ENSG00000105877|chr7:21570187-21570188|-/A|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	608.3856201171875	2	608.369664	1214.72478	0.61953	0.0003769	-0.60526	-0.00036822	0.014263	8.6772E-06	608.3692540531249	56.512	0.15739	56.229	56.097	56.255	-0.28367					4	2	2	0	0	0	0.26938	1	21418	21418		0	0	1	1038000			9590	698	5411	5448	9279	9279					0.12600180170852582
ELYPSRQI	8	Unmodified	_ELYPSRQI_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;DIP2A|p.C1194G|1|0.19|ENSG00000160305|chr21:46557020-46557020|T/G|missense_variant;ENST00000481883.1_1_21:47976701-47976983:+|nuORF;ENST00000472364.1_1_21:47974114-47978399:+|nuORF	nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MSMS	HCT116MG_D190212_S4	4	503.2704162597656	2	503.271824	1004.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.997	1	34.611	34.111	35.111	-0.38606								0	0	0	0.85589	1	12801	12801		18.135	4.6271	1				9591	4445	5412	5449	9280	9280					0.027011699261947797
ELYSATIVPD	10	Unmodified	_ELYSATIVPD_					0	0	0			REV__CETP|p.T266Pfs*28|1|0.33|ENSG00000087237|chr16:56973372-56973372|C/-|frameshift_variant	REV__CETP|p.T266Pfs*28|1|0.33|ENSG00000087237|chr16:56973372-56973372|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	554.2821655273438	2	554.282054	1106.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.309	1	40.008	39.508	40.508	-0.30161								0	0	0	0.90892	1	14960	14960		13.906	1.3745	1		+		9592	10166	5413	5450	9281	9281					0.0005429579534848017
EMDSERLQY	9	Unmodified	_EMDSERLQY_					0	0	0		ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1;PPFIBP1|p.R282Kfs*16|1|0.05|ENSG00000110841|chr12:27656665-27656666|-/A|frameshift_variant;PPFIBP1|p.A311Lfs*5|1|0.38|ENSG00000110841|chr12:27660904-27660904|A/-|frameshift_variant;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	585.7581176757812	2	585.75842	1169.50229	0.75363	0.00044145	-0.27893	-0.00016339	0.4747	0.00027806	585.7580686452715	33.167	0.2078	33.167	33.037	33.244	0					5	3	2	0	0	0	0.01405	1	12292	12292		103.35	67.226	1	8580400			9593	2265	5414	5451	9282	9282					-0.07568306747293718
EMDSERLQY	9	Unmodified	_EMDSERLQY_					0	0	0		ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1;PPFIBP1|p.R282Kfs*16|1|0.05|ENSG00000110841|chr12:27656665-27656666|-/A|frameshift_variant;PPFIBP1|p.A311Lfs*5|1|0.38|ENSG00000110841|chr12:27660904-27660904|A/-|frameshift_variant;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	MSMS	HCT116MG_D190212_S2	2	585.7589111328125	2	585.75842	1169.50229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.372	1	33.179	32.679	33.679	-0.19297								0	0	0	1.0371E-07	1	12380	12380		149.91	99.981	1				9594	2265	5414	5451	9283	9283					-0.07568306747293718
EMDSERLQY	9	Unmodified	_EMDSERLQY_					0	0	0		ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1;PPFIBP1|p.R282Kfs*16|1|0.05|ENSG00000110841|chr12:27656665-27656666|-/A|frameshift_variant;PPFIBP1|p.A311Lfs*5|1|0.38|ENSG00000110841|chr12:27660904-27660904|A/-|frameshift_variant;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	585.7592163085938	2	585.75842	1169.50229	0.50972	0.00029857	0.37246	0.00021817	0.88218	0.00051674	585.7587913020361	33.545	0.2595	33.255	33.096	33.356	-0.29013					7	4	2	0	0	0	0.0050238	1	12329	12329		137.42	93.566	1	14412000			9595	2265	5414	5451	9284	9284					-0.07568306747293718
EMDSERLQY	9	Unmodified	_EMDSERLQY_					0	0	0		ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1;PPFIBP1|p.R282Kfs*16|1|0.05|ENSG00000110841|chr12:27656665-27656666|-/A|frameshift_variant;PPFIBP1|p.A311Lfs*5|1|0.38|ENSG00000110841|chr12:27660904-27660904|A/-|frameshift_variant;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	MSMS	HCT116MG_D190212_S4	4	585.7586669921875	2	585.75842	1169.50229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.65	1	33.266	32.766	33.766	-0.38426								0	0	0	0.0099415	1	12257	12257		106.94	57.007	1				9596	2265	5414	5451	9285	9285					-0.07568306747293718
EMFETLVM	8	Unmodified	_EMFETLVM_					0	0	0			REV__nc|ENSG00000106123|O15197-2|EPHB6	REV__nc|ENSG00000106123|O15197-2|EPHB6	MULTI-MSMS	HCT116MG_D190212_S3	3	500.2305908203125	2	500.229922	998.44529	0.3875	0.00019384	0.6017	0.00030099	0.98919	0.00049482	500.230196649263	31.7	1.355	31.429	30.595	31.95	-0.27028					52	25	3	0	0	0	0.73076	1	11386	11386		19.439	0	1	4456800	+		9597	11288	5415	5452	9286	9286					-0.053994455573615596
EMGTVVAA	8	Unmodified	_EMGTVVAA_					0	0	0			REV__ENSG00000075673|ENST00000381946|ATP12A	REV__ENSG00000075673|ENST00000381946|ATP12A	MULTI-MSMS	HCT116MG_D190212_S4	4	777.3814086914062	1	777.381116	776.37384	1.0763	0.00083668	-0.24271	-0.00018868	0.83358	0.00064801	777.3807652508535	33.757	0.40047	33.373	33.169	33.569	-0.38426					14	7	3	0	0	0	0.32897	1	12286	12286		56.541	2.9657	1	17106000	+		9598	10812	5416	5453	9287	9287					-0.02329197199742339
EMKLELLK	8	Unmodified	_EMKLELLK_					0	0	0			REV__SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant	REV__SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	502.73565673828125	2	502.296453	1002.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.813	1	49.65	49.15	50.15	-0.16369								0	0	0	0.8837	1	19076	19076		13.906	2.2658	1		+		9599	10702	5417	5454	9288	9288					0.07716741890783396
EMKPHPWFF	9	Oxidation (M)	_EM(Oxidation (M))KPHPWFF_		EM(1)KPHPWFF		EM(78)KPHPWFF	0	0	1		ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S2	2	617.7899169921875	2	617.789327	1233.5641	0.29354	0.00018134	0.054298	3.3545E-05	0.34784	0.00021489	618.2907880610398	53.093	0.31176	52.904	52.758	53.07	-0.18922					11	5	3	0	0	0	0.042978	1	20431	20431		78.149	57.278	1	15063000			9600	5477	5418	5455	9289	9289		118			-0.043339105375252984
EMKPHPWFF	9	Unmodified	_EMKPHPWFF_					0	0	0		ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S2	2	609.791748046875	2	609.791869	1217.56919	0.55524	0.00033858	-0.21595	-0.00013169	0.33929	0.0002069	609.7916183472167	54.671	0.40921	54.481	54.303	54.712	-0.1894					16	7	3	0	0	0	0.0053819	1	21058	21058		134.3	104.46	1	129810000			9601	5477	5418	5456	9290	9290					-0.030896066749164675
EMKPHPWFF	9	Unmodified	_EMKPHPWFF_					0	0	0		ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S2	2	406.8636779785156	3	406.863672	1217.56919	-0.1392	-5.6635E-05	-0.063389	-2.5791E-05	-0.20259	-8.2426E-05	406.8636443421103	54.671	0.25531	54.481	54.303	54.559	-0.1894					10	4	3	0	0	0	0.35128	1	21085	21085		18.373	18.373	1	28889000			9602	5477	5418	5456	9291	9291					-0.030896066749164675
EMKPHPWFF	9	Unmodified	_EMKPHPWFF_					0	0	0		ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	609.791869	1217.56919	0.59127	0.00036055	0.25502	0.00015551	0.84628	0.00051606	609.7921329826656	54.46	0.20287	54.46	54.333	54.536	0	-0.010733	0.00036973	NaN	134.3	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20698000			9603	5477	5418	5456							-0.030896066749164675
EMKRTCCTP	9	Unmodified	_EMKRTCCTP_					0	0	0			REV__GPC5|p.D168*|2|0.41|ENSG00000179399|chr13:91693356-91693357|-/T|frameshift_variant	REV__GPC5|p.D168*|2|0.41|ENSG00000179399|chr13:91693356-91693357|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1068.4638671875	1	1068.46348	1067.45621	0.4463	0.00047685	-0.064516	-6.8933E-05	0.38178	0.00040792	1068.4633387129975	41.074	0.56728	41.006	40.675	41.242	-0.068333					22	10	3	0	0	0	0.23138	1	15473	15473		37.974	0	1	128550000	+		9604	13639	5419	5457	9292	9292					-0.07482366454746625
EMLLIILVY	9	Unmodified	_EMLLIILVY_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-MSMS	HCT116MG_D190212_S1	1	553.8304443359375	2	553.830129	1105.6457	0.58683	0.000325	-0.42061	-0.00023295	0.16622	9.2059E-05	553.829755879736	46.425	0.67215	46.425	46.079	46.751	0					35	12	3	0	0	0	0.24973	1	17613	17613		36.044	36.044	1	65370000			9605	6588	5420	5458	9293	9293					0.09710772101743714
EMLLIILVY	9	Unmodified	_EMLLIILVY_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-MSMS	HCT116MG_D190212_S2	2	553.826416015625	2	553.830129	1105.6457	0.62708	0.0003473	-1.0652	-0.00058991	-0.43807	-0.00024262	553.829283371533	46.954	1.5459	46.832	45.997	47.543	-0.12175					48	29	2	0	0	0	0.64512	1	17709	17709		8.5933	0	1	28015000			9606	6588	5420	5458	9294	9294					0.09710772101743714
EMLLIILVY	9	Unmodified	_EMLLIILVY_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	553.830129	1105.6457	0.52883	0.00029288	0.012015	6.654E-06	0.54084	0.00029953	553.8298994391629	47.013	0.55786	47.013	46.751	47.309	0	0.09028	0.00010302	NaN	8.5933	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22996000			9607	6588	5420	5458							0.09710772101743714
EMMLEFKDWK	10	Unmodified	_EMMLEFKDWK_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	452.8812255859375	3	452.882403	1355.62538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5388	1	4.5675	4.0675	5.0675	0.028732								0	0	0	0.96836	1	1364	1364		0.62683	0.17231	1		+		9608	10426	5421	5459	9295	9295					-0.038207666203788904
EMPAWASP	8	Unmodified	_EMPAWASP_					0	0	0			REV__nc|ENSG00000188883|A4D1S0-2|KLRG2	REV__nc|ENSG00000188883|A4D1S0-2|KLRG2	MULTI-MSMS	HCT116MG_D190212_S4	4	444.6999206542969	2	444.699646	887.384739	0.51299	0.00022813	-0.8859	-0.00039396	-0.37291	-0.00016583	444.6993303813941	33.686	0.19302	33.302	33.169	33.362	-0.38426					6	3	2	0	0	0	0.85329	1	12276	12276		4.756	4.756	1	2814200	+		9609	13977	5422	5460	9296	9296					-0.06345794825460871
EMRYKFFKLGY	11	Unmodified	_EMRYKFFKLGY_					0	0	0		tr|U7SZI2|U7SZI2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00881PE=4SV=1	tr|U7SZI2|U7SZI2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00881PE=4SV=1	tr|U7SZI2|U7SZI2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00881PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	494.59161376953125	3	494.59184	1480.75369	0.49839	0.0002465	-1.304	-0.00064493	-0.80558	-0.00039843	494.5913196044239	20.81	0.26067	20.81	20.644	20.904	0					6	4	2	0	0	0	0.74191	1	7318	7318		2.4348	1.1051	1	2584900			9610	18530	5423	5461	9297	9297					0.032545366850172286
EMSCASCCH	9	Unmodified	_EMSCASCCH_					0	0	0			REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S1	1	970.2886352539062	1	970.288555	969.281278	0.59391	0.00057626	-0.095651	-9.2809E-05	0.49826	0.00048345	970.2883298134783	25.175	1.9306	25.175	24.987	26.918	0					67	36	3	0	0	0	0.71345	1	9518	9518		4.3292	2.0265	1	39005000	+		9611	12516	5424	5462	9298	9298					-0.20459109591433844
EMSCASCCH	9	Unmodified	_EMSCASCCH_					0	0	0			REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	970.288555	969.281278	0.63987	0.00062086	-0.32837	-0.00031862	0.3115	0.00030224	970.2880243111979	25.401	1.2468	25.029	24.767	26.014	-0.37195	-0.20617	-0.00010339	NaN	4.3292	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17046000	+		9612	12516	5424	5462							-0.20459109591433844
EMSCASCCH	9	Unmodified	_EMSCASCCH_					0	0	0			REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	970.288555	969.281278	0.64214	0.00062306	-0.27265	-0.00026455	0.36949	0.00035851	970.2881093019263	25.529	1.9763	25.249	24.902	26.878	-0.27958	0.013868	-4.9326E-05	NaN	4.3292	74	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21268000	+		9613	12516	5424	5462							-0.20459109591433844
EMSWMEESKL	10	Unmodified	_EMSWMEESKL_					0	0	0			REV__ENST00000357654.7_2_17:41203121-41209151:-|nuORF	REV__ENST00000357654.7_2_17:41203121-41209151:-|nuORF	MSMS	HCT116MG_D190212_S2	2	423.6522521972656	3	423.854513	1268.54171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.415	1	14.095	13.595	14.595	-0.31952								0	0	0	0.95648	1	4717	4717		1.5923	0.37745	1		+		9614	15056	5425	5463	9299	9299					-0.08181922788094198
EMSWMEESKL	10	Unmodified	_EMSWMEESKL_					0	0	0			REV__ENST00000357654.7_2_17:41203121-41209151:-|nuORF	REV__ENST00000357654.7_2_17:41203121-41209151:-|nuORF	MSMS	HCT116MG_D190212_S2	2	423.8532409667969	3	423.854513	1268.54171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.56	1	14.24	13.74	14.74	-0.31952								0	0	0	0.95648	1	4775	4775		1.5923	0	1		+		9615	15056	5425	5463	9300	9300					-0.08181922788094198
ENACQSIYPL	10	Unmodified	_ENACQSIYPL_					0	0	0		ENST00000488297.2_1_5:87678278-87678506:+|nuORF	ENST00000488297.2_1_5:87678278-87678506:+|nuORF	ENST00000488297.2_1_5:87678278-87678506:+|nuORF	MSMS	HCT116MG_D190212_S3	3	569.2640380859375	2	569.265881	1136.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.652	1	53.353	52.853	53.853	-0.29946								0	0	0	0.94107	1	20311	20311		6.7232	0.51738	1				9616	8313	5426	5464	9301	9301					-0.04558814879305828
ENAEGHRFH	9	Unmodified	_ENAEGHRFH_					0	0	0			REV__ENST00000230859.7_2_5:6756907-6757138:+|nuORF	REV__ENST00000230859.7_2_5:6756907-6757138:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	549.2406005859375	2	548.749579	1095.4846	0.36051	0.00019783	-1.0795	-0.00059236	-0.71896	-0.00039453	548.7487001620995	30.669	0.50834	30.411	30.256	30.764	-0.25724					20	12	2	0	0	0	0.23771	1	11277	11277		14.838	0	1	12898000	+		9617	14547	5427	5465	9302	9302					-0.059318411672848015
ENAGDVAFVR	10	Unmodified	_ENAGDVAFVR_					0	0	0		LTF|p.K565R|1|0.2|ENSG00000012223|chr3:46441445-46441445|T/C|missense_variant;MFI2|p.V627Cfs*29|1|0.15|ENSG00000163975|chr3:197006608-197006609|-/A|frameshift_variant;ENSG00000163975|ENST00000296350|MELTF	LTF|p.K565R|1|0.2|ENSG00000012223|chr3:46441445-46441445|T/C|missense_variant	LTF|p.K565R|1|0.2|ENSG00000012223|chr3:46441445-46441445|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	539.271728515625	2	539.269813	1076.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.313	1	41.244	40.744	41.744	-0.068199								0	0	0	0.91971	1	15606	15606		11.495	0	1				9618	4657	5428	5466	9303	9303					-0.010129195675290248
ENAKAVDIGT	10	Unmodified	_ENAKAVDIGT_					0	0	0		tr|U7SNL9|U7SNL9_FUSNUCytoplasmicproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02036PE=4SV=1	tr|U7SNL9|U7SNL9_FUSNUCytoplasmicproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02036PE=4SV=1	tr|U7SNL9|U7SNL9_FUSNUCytoplasmicproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02036PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.26251220703125	2	509.264196	1016.51384	0.25662	0.00013069	-1.536	-0.00078225	-1.2794	-0.00065156	509.2629984560464	26.515	0.25956	26.154	26.024	26.284	-0.36164					6	4	2	0	0	0	0.50387	1	9631	9631		34.932	5.4949	1	10787000			9619	18368	5429	5467	9304	9304					0.00624258338348227
ENATALHVKF	10	Unmodified	_ENATALHVKF_					0	0	0		ENST00000481749.5_1_3:138374233-138426144:-|nuORF;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant;ENSG00000051382|ENST00000674063|PIK3CB	ENST00000481749.5_1_3:138374233-138426144:-|nuORF	ENST00000481749.5_1_3:138374233-138426144:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	565.3035888671875	2	565.303655	1128.59276	0.31683	0.0001791	0.2271	0.00012838	0.54393	0.00030749	565.303705736544	23.549	0.20874	23.549	23.418	23.627	0					9	3	3	0	0	0	0.15126	1	8401	8401		63.961	12.331	1	12305000			9620	1057	5430	5468	9305	9305					0.03360530363283942
ENATALHVKF	10	Unmodified	_ENATALHVKF_					0	0	0		ENST00000481749.5_1_3:138374233-138426144:-|nuORF;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant;ENSG00000051382|ENST00000674063|PIK3CB	ENST00000481749.5_1_3:138374233-138426144:-|nuORF	ENST00000481749.5_1_3:138374233-138426144:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	565.3043823242188	2	565.303655	1128.59276	0.65666	0.00037121	-0.052467	-2.966E-05	0.60419	0.00034155	565.3035268999272	24.228	0.20816	23.848	23.718	23.926	-0.38003					9	3	3	0	0	0	0.10561	2	8691	8688;8691		72.968	21.338	1	48133000			9621	1057	5430	5468	9306;9307	9307					0.03360530363283942
ENDETVTGY	9	Unmodified	_ENDETVTGY_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MSMS	HCT116MG_D190212_S2	2	514.2169189453125	2	514.214369	1026.41418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.9	1	27.558	27.058	28.058	-0.34201								0	0	0	0.76694	1	10155	10155		11.64	0.81637	1		+		9622	13075	5431	5469	9308	9308					-0.09796604066264081
ENEKNRNQED	10	Unmodified	_ENEKNRNQED_					0	0	0		LUZP1|p.P479Rfs*22|2|0.4|ENSG00000169641|chr1:23092826-23092826|G/-|frameshift_variant;LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant;LUZP1|p.F744Lfs*22|1|0.36|ENSG00000169641|chr1:23092030-23092030|A/-|frameshift_variant;LUZP1|p.T938Nfs*5|1|0.29|ENSG00000169641|chr1:23091451-23091452|-/G|frameshift_variant;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1;ENSG00000169641|ENST00000302291|LUZP1	LUZP1|p.P479Rfs*22|2|0.4|ENSG00000169641|chr1:23092826-23092826|G/-|frameshift_variant	LUZP1|p.P479Rfs*22|2|0.4|ENSG00000169641|chr1:23092826-23092826|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	638.2835083007812	2	638.281637	1274.54872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.637	1	45.326	44.826	45.826	-0.31094								0	0	0	0.92917	1	17093	17093		9.3831	0	1				9623	5084	5432	5470	9309	9309					-0.07757150591646678
ENELLQMFYRQ	11	Unmodified	_ENELLQMFYRQ_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-MSMS	HCT116MG_D190212_S2	2	735.8590087890625	2	735.855926	1469.6973	0.92952	0.00068399	2.3103	0.0017	3.2398	0.002384	735.8577564463347	16.207	0.20915	15.872	15.794	16.003	-0.33451					5	3	2	0	0	0	0.74191	1	5477	5477		4.5289	0.33936	1	2668100			9624	2097	5433	5471	9310	9310					-0.01876135942302426
ENERKKKKKKK	11	Unmodified	_ENERKKKKKKK_					0	0	0			REV__ENSG00000055044|ENST00000264279|NOP58	REV__ENSG00000055044|ENST00000264279|NOP58	MSMS	HCT116MG_D190212_S1	1	722.4605712890625	2	722.459542	1442.90453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.606	1	31.606	31.106	32.106	0								0	0	0	0.9598	1	11635	11635		1.1933	1.1933	1		+		9625	10642	5434	5472	9311	9311					0.2007943938799599
ENEYETWTM	9	Unmodified	_ENEYETWTM_					0	0	0		ENSG00000243646|ENST00000290200|IL10RB;ENST00000493295.5_1_21:34640622-34668659:+|nuORF	ENSG00000243646|ENST00000290200|IL10RB	ENSG00000243646|ENST00000290200|IL10RB	MSMS	HCT116MG_D190212_S1	1	601.589111328125	2	601.737154	1201.45975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.098	1	44.098	43.598	44.598	0								0	0	0	0.76978	1	16679	16679		1.6526	0.17072	1				9626	6558	5435	5473	9312	9312					-0.13291701875550643
ENFVVKVEP	9	Unmodified	_ENFVVKVEP_					0	0	0		tr|U7T5J0|U7T5J0_FUSNUGlycolateoxidase,subunitGlcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00166PE=4SV=1	tr|U7T5J0|U7T5J0_FUSNUGlycolateoxidase,subunitGlcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00166PE=4SV=1	tr|U7T5J0|U7T5J0_FUSNUGlycolateoxidase,subunitGlcDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00166PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	530.800537109375	2	530.787307	1059.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.283	1	25.921	25.421	26.421	-0.36164								0	0	0	0.52331	1	9502	9502		27.629	1.6081	1				9627	18629	5436	5474	9313	9313					0.03266323240427482
ENGIHTSIP	9	Unmodified	_ENGIHTSIP_					0	0	0			REV__nc|ENSG00000124429|Q8WVV4-3|POF1B	REV__nc|ENSG00000124429|Q8WVV4-3|POF1B	MSMS	HCT116MG_D190212_S2	2	484.2459716796875	2	484.245806	966.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.265	1	18.895	18.395	19.395	-0.3695								0	0	0	0.099502	1	6670	6670		56.177	0	1		+		9628	11785	5437	5475	9314	9314					-0.007519934875631407
ENGSLYDY	8	Unmodified	_ENGSLYDY_					0	0	0		ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	MULTI-MSMS	HCT116MG_D190212_S2	2	960.3943481445312	1	960.394518	959.387241	0.79688	0.00076532	-0.3397	-0.00032625	0.45718	0.00043907	960.3942311962859	34.773	0.25931	34.614	34.45	34.709	-0.15834					8	4	2	0	0	0	0.26254	1	12946	12946		62.573	7.7991	1	45739000			9629	3579	5438	5476	9315	9315					-0.09407667886796389
ENGSLYDY	8	Unmodified	_ENGSLYDY_					0	0	0		ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	MULTI-MSMS	HCT116MG_D190212_S3	3	960.393798828125	1	960.394518	959.387241	0.65248	0.00062663	-0.18462	-0.00017731	0.46785	0.00044932	960.3942426685977	34.971	0.36312	34.674	34.544	34.907	-0.29707					10	6	2	0	0	0	0.20876	1	12894	12894		71.922	17.149	1	15210000			9630	3579	5438	5476	9316	9316					-0.09407667886796389
ENGSPLNHRIE	11	Unmodified	_ENGSPLNHRIE_					0	0	0		ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	HCT116MG_D190212_S2	2	633.318359375	2	633.315283	1264.61601	0.36282	0.00022978	0.40702	0.00025777	0.76984	0.00048755	633.3155553891256	21.854	0.4166	21.469	21.271	21.687	-0.38503					17	7	3	0	0	0	0.68267	1	7696	7696		26.268	12.362	1	27403000			9631	3178	5439	5477	9317	9317					-0.005710755900281583
ENGSPLNHRIE	11	Unmodified	_ENGSPLNHRIE_					0	0	0		ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	HCT116MG_D190212_S3	3	633.328369140625	2	633.315283	1264.61601	0.45473	0.00028799	-0.42892	-0.00027164	0.025809	1.6345E-05	633.3150426843772	21.601	1.3613	21.619	20.646	22.008	0.018446					52	25	4	0	0	0	0.19911	2	7539	7448;7539		75.571	10.186	1	33875000			9632	3178	5439	5477	9318;9319	9319					-0.005710755900281583
ENGSPLNHRIE	11	Unmodified	_ENGSPLNHRIE_					0	0	0		ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	HCT116MG_D190212_S4	4	633.3164672851562	2	633.315283	1264.61601	0.42626	0.00026995	-0.053003	-3.3567E-05	0.37325	0.00023639	633.3152440737227	21.768	0.67483	21.55	21.27	21.945	-0.21832					36	12	4	0	0	0	0.51928	1	7482	7482		44.392	7.3173	1	29023000			9633	3178	5439	5477	9320	9320					-0.005710755900281583
ENGTRHEWTVY	11	Unmodified	_ENGTRHEWTVY_					0	0	0		ENST00000565271.1_1_17:74668237-74668399:+|nuORF	ENST00000565271.1_1_17:74668237-74668399:+|nuORF	ENST00000565271.1_1_17:74668237-74668399:+|nuORF	MSMS	HCT116MG_D190212_S3	3	696.3202514648438	2	696.320565	1390.62658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.036	1	24.93	24.43	25.43	-0.10618								0	0	0	0.93295	1	8919	8919		15.248	2.206	1				9634	8854	5440	5478	9321	9321					-0.05311092935630768
ENGWHITP	8	Unmodified	_ENGWHITP_					0	0	0			REV__ENSG00000065491|ENST00000373491|TBC1D22B	REV__ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-SECPEP	HCT116MG_D190212_S4	4	476.913818359375	2	477.227417	952.44028	0.47399	0.0002262	1.3468	0.00064272	1.8208	0.00086892	477.2284206597304	32.614	0.67473	32.234	31.845	32.52	-0.37924					22	12	3	0	0	0	0.32676	1	11777	11777		2.0598	1.2661	1	29271000	+		9635	10701	5441	5479	9322	9322					-0.03784245313477186
ENHCSVIQQ	9	Unmodified	_ENHCSVIQQ_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant;PLCH2|p.G1073Rfs*20|1|0.35|ENSG00000149527|chr1:2504173-2504174|-/C|frameshift_variant;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MSMS	HCT116MG_D190212_S2	2	529.2387084960938	2	529.240198	1056.46584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.957	1	17.6	17.1	18.1	-0.35647								0	0	0	0.38321	1	6143	6143		34.402	1.616	1				9636	7249	5442	5480	9323	9323					-0.060131388533591235
ENIGVEVNK	9	Unmodified	_ENIGVEVNK_					0	0	0		tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	tr|U7SHB1|U7SHB1_FUSNUAlkalineshockresponsemembraneanchorproteinAmaPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02326PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	500.7691955566406	2	501.266739	1000.51892	0.23658	0.00011859	-0.81584	-0.00040895	-0.57926	-0.00029037	501.7656046635818	44.168	0.26701	44.168	44.036	44.304	0					10	4	3	0	0	0	0.1898	1	16713	16713		31.268	5.869	1	16453000			9637	18303	5443	5481	9324	9324					0.01868562200957058
ENIIKNRSL	9	Unmodified	_ENIIKNRSL_					0	0	0		ENSG00000024526|ENST00000456315|DEPDC1;nc|ENSG00000024526|Q5TB30-2|DEPDC1;ENST00000488146.5_1_1:68942617-68947320:-|nuORF	ENSG00000024526|ENST00000456315|DEPDC1	ENSG00000024526|ENST00000456315|DEPDC1	MULTI-SECPEP	HCT116MG_D190212_S1	1	543.79296875	2	543.81693	1085.61931	0.6001	0.00032634	0.21197	0.00011527	0.81206	0.00044161	544.3188152124472	46.775	0.46655	46.775	46.492	46.958	0					10	8	2	0	0	0	0.20889	1	17685	17685		18.146	3.3081	1	4501900			9638	952	5444	5482	9325	9325					0.07992219254606425
ENILSQIAI	9	Unmodified	_ENILSQIAI_					0	0	0		tr|U7SLR0|U7SLR0_FUSNUTyrosinephenol-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tplPE=3SV=1	tr|U7SLR0|U7SLR0_FUSNUTyrosinephenol-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tplPE=3SV=1	tr|U7SLR0|U7SLR0_FUSNUTyrosinephenol-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tplPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	500.7691955566406	2	500.787307	999.560061	0.24787	0.00012413	0.90562	0.00045352	1.1535	0.00057765	500.7873324532162	44.062	0.3112	44.062	43.884	44.195	0					8	5	2	0	0	0	0.19273	1	16713	16713		29.082	7.3349	1	9632900			9639	18339	5445	5483	9326	9326					0.060263232404167866
ENILTLFD	8	Unmodified	_ENILTLFD_					0	0	0			REV__ENST00000344302.8_1_X:46332443-46332647:+|nuORF	REV__ENST00000344302.8_1_X:46332443-46332647:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	964.4989624023438	1	964.498589	963.491313	0.77996	0.00075227	-0.072317	-6.975E-05	0.70764	0.00068252	964.4983432894569	55.528	0.2055	55.528	55.4	55.606	0					6	3	2	0	0	0	0.22822	1	21350	21350		68.081	0.73685	1	44660000	+		9640	14999	5446	5484	9327	9327					0.00810658940713438
ENIMFLILV	9	Unmodified	_ENIMFLILV_					0	0	0			REV__RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant	REV__RGPD4|p.K568Nfs*33|1|0.14|ENSG00000196862|chr2:107859787-107859787|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	546.3123168945312	2	546.312103	1090.60965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.394	1	38.093	37.593	38.593	-0.30137								0	0	0	0.76669	1	14221	14221		12.532	0	1		+		9641	17468	5447	5485	9328	9328					0.06797314924870079
ENIRHLDDDTA	11	Unmodified	_ENIRHLDDDTA_					0	0	0			REV__ENSG00000136715|ENST00000643581|SAP130	REV__ENSG00000136715|ENST00000643581|SAP130	MULTI-MSMS	HCT116MG_D190212_S1	1	649.8026123046875	2	649.802205	1297.58986	0.78097	0.00050748	0.18749	0.00012183	0.96846	0.00062931	649.8021688799842	16.863	0.15648	16.863	16.785	16.942	0					4	2	2	0	0	0	0.74191	1	5732	5732		5.7319	0.43497	1	3574000	+		9642	12140	5448	5486	9329	9329					-0.04703389552196313
ENKAVEYN	8	Unmodified	_ENKAVEYN_					0	0	0		nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1;COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant;COL22A1|p.I680Nfs*21|1|0.2|ENSG00000169436|chr8:138751504-138751505|-/T|frameshift_variant	nc|ENSG00000169436|Q8NFW1-3|COL22A1	nc|ENSG00000169436|Q8NFW1-3|COL22A1	MSMS	HCT116MG_D190212_S1	1	483.7294921875	2	483.729989	965.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.846	1	22.846	22.346	23.346	0								0	0	0	0.73727	1	8108	8108		27.629	7.1752	1				9643	5074	5449	5487	9330	9330					-0.038679862415278876
ENKETLLGP	9	Unmodified	_ENKETLLGP_					0	0	0			REV__nc|ENSG00000179698|A6NE52-2|WDR97	REV__nc|ENSG00000179698|A6NE52-2|WDR97	MULTI-MSMS	HCT116MG_D190212_S1	1	500.5736389160156	2	500.769114	999.523675	0.37886	0.00018972	0.12858	6.4388E-05	0.50744	0.00025411	500.7690809625756	27.567	0.25822	27.567	27.438	27.696	0					10	4	3	0	0	0	0.49914	1	9957	9957		16.942	2.104	1	13232000	+		9644	13646	5450	5488	9331	9331					0.02389446343727286
ENKEYKQAIKI	11	Unmodified	_ENKEYKQAIKI_					0	0	0		TTC29|p.Y300Vfs*20|1|0.42|ENSG00000137473|chr4:146833882-146833885|AGTA/-|frameshift_variant;ENSG00000137473|ENST00000325106|TTC29;nc|ENSG00000137473|Q8NA56-2|TTC29	TTC29|p.Y300Vfs*20|1|0.42|ENSG00000137473|chr4:146833882-146833885|AGTA/-|frameshift_variant	TTC29|p.Y300Vfs*20|1|0.42|ENSG00000137473|chr4:146833882-146833885|AGTA/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	682.8326416015625	2	682.382634	1362.75072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.347	1	38.045	37.545	38.545	-0.30137								0	0	0	0.94851	1	14202	14202		7.1017	1.3699	1				9645	3478	5451	5489	9332	9332					0.08384984831855036
ENKLWSVEP	9	Unmodified	_ENKLWSVEP_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MSMS	HCT116MG_D190212_S2	2	551.28076171875	2	551.282389	1100.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.202	1	27.872	27.372	28.372	-0.32987								0	0	0	0.30238	1	10277	10277		39.95	6.5048	1		+		9646	11129	5452	5490	9333	9333					0.003971352350617963
ENKQTFLQ	8	Unmodified	_ENKQTFLQ_					0	0	0		ENST00000519677.1_1_5:78296041-78296494:-|nuORF	ENST00000519677.1_1_5:78296041-78296494:-|nuORF	ENST00000519677.1_1_5:78296041-78296494:-|nuORF	MSMS	HCT116MG_D190212_S3	3	504.262939453125	2	504.261456	1006.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.057	1	29.814	29.314	30.314	-0.24267								0	0	0	0.8837	1	10940	10940		15.847	1.0089	1				9647	8550	5453	5491	9334	9334					0.005365795465081646
ENLDKSVGI	9	Unmodified	_ENLDKSVGI_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	HCT116MG_D190212_S4	4	487.76123046875	2	487.761289	973.508025	-0.097642	-4.7626E-05	0.21358	0.00010418	0.11594	5.6549E-05	487.76153868986916	27.901	0.98743	27.58	27.398	28.385	-0.32157					58	18	6	0	0	0	0.071914	1	10224	10224		63.961	0	1	1152300000	+		9648	10645	5454	5492	9335	9335					0.020211598266882902
ENLDPLGIH	9	Unmodified	_ENLDPLGIH_					0	0	0		CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	504.26220703125	2	504.261456	1006.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.917	1	43.917	43.417	44.417	0								0	0	0	0.067861	1	16605	16605		65.235	13.605	1				9649	312	5455	5493	9336	9336					0.005365795465081646
ENLDSHLPP	9	Unmodified	_ENLDSHLPP_					0	0	0		ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	MSMS	HCT116MG_D190212_S2	2	511.2389221191406	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.107	1	27.777	27.277	28.277	-0.32987								0	0	0	0.16454	1	10239	10239		49.933	9.9757	1				9650	2036	5456	5494	9337	9337					-0.021800108331490264
ENLGTLEKD	9	Unmodified	_ENLGTLEKD_					0	0	0			REV__HMGCR|p.F113L|1|0.34|ENSG00000113161|chr5:75344306-75344306|C/A|missense_variant	REV__HMGCR|p.F113L|1|0.34|ENSG00000113161|chr5:75344306-75344306|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	510.7626647949219	2	509.756204	1017.49785	0.1134	5.7807E-05	0.42236	0.0002153	0.53576	0.00027311	509.7561968689484	31.288	0.52238	31.027	30.813	31.335	-0.26071					24	9	3	0	0	0	0.24895	1	11504	11504		36.127	1.7253	1	33753000	+		9651	11475	5457	5495	9338	9338					-0.010194478985567912
ENLLEALRE	9	Unmodified	_ENLLEALRE_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	HCT116MG_D190212_S2	2	543.3009643554688	2	543.793121	1085.57169	0.81089	0.00044096	0.11552	6.2821E-05	0.92641	0.00050378	543.7933156097964	46.608	0.36013	46.497	46.369	46.729	-0.11121					8	6	2	0	0	0	0.19273	1	17747	17747		29.082	1.4528	1	11537000			9652	2966	5458	5496	9339	9339					0.032325202637593975
ENLPRTDTG	9	Unmodified	_ENLPRTDTG_					0	0	0		ENST00000555761.5_2_14:78221311-78221455:-|nuORF	ENST00000555761.5_2_14:78221311-78221455:-|nuORF	ENST00000555761.5_2_14:78221311-78221455:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	501.74725341796875	2	501.74617	1001.47779	0.62781	0.000315	0.59101	0.00029654	1.2188	0.00061154	501.74655981044447	24.286	0.26031	23.906	23.77	24.03	-0.38003					9	4	3	0	0	0	0.22946	1	8701	8701		38.176	0	1	16293000			9653	8786	5459	5497	9340	9340					-0.02289198838525408
ENLVSQVP	8	Unmodified	_ENLVSQVP_					0	0	0		SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant;SPATA31A6|p.T1188Qfs*2|1|0.26|ENSG00000185775|chr9:42189259-42189259|A/-|frameshift_variant;SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant;SPATA31A1|p.T1192Nfs*14|1|0.28|ENSG00000204849|chr9:39361333-39361334|-/A|frameshift_variant;SPATA31A6|p.N1191Tfs*16|1|0.12|ENSG00000185775|chr9:42189269-42189269|A/-|frameshift_variant;ENSG00000185775|ENST00000332857|SPATA31A6;ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1	SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	SPATA31A3|p.S1180Kfs*9|1|0.25|ENSG00000275969|chr9:66986959-66986960|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	444.24395751953125	2	443.23745	884.460347	0.28767	0.00012751	0.87257	0.00038675	1.1602	0.00051426	443.2374509736866	27.891	0.61371	27.569	27.2	27.814	-0.32157					21	11	3	0	0	0	0.71077	1	10004	10004		21.747	0	1	8697900			9654	5845	5460	5498	9341	9341					0.013495056264900995
ENMESMCCCI	10	Unmodified	_ENMESMCCCI_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MSMS	HCT116MG_D190212_S1	1	388.12750244140625	3	388.128374	1161.36329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8242	1	9.8242	9.3242	10.324	0								0	0	0	0.96769	1	2988	2988		0.77653	0	1		+		9655	12937	5461	5499	9342	9342					-0.21093375294640282
ENPFRELP	8	Unmodified	_ENPFRELP_					0	0	0		VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant	VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant	VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	501.75872802734375	2	501.256174	1000.49779	0.35699	0.00017894	1.3082	0.00065577	1.6652	0.00083471	501.25666698599844	26.619	0.68104	26.258	26.076	26.757	-0.36164					21	12	3	0	0	0	0.71077	1	9800	9800		21.747	0	1	16770000			9656	18691	5462	5500	9343	9343					-0.0024340310790194053
ENPGTPCRP	9	Unmodified	_ENPGTPCRP_					0	0	0		ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-MSMS	HCT116MG_D190212_S2	2	485.724365234375	2	485.724184	969.433814	0.12994	6.3115E-05	0.26911	0.00013071	0.39905	0.00019383	485.7243178525563	16.401	0.83484	16.059	15.525	16.36	-0.34183					26	15	3	0	0	0	0.29516	1	5493	5493		31.268	5.869	1	4142700			9657	3388	5463	5501	9344	9344					-0.05212506536508954
ENPNLVMPP	9	Unmodified	_ENPNLVMPP_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;FLII|p.S470Afs*32|1|0.36|ENSG00000177731|chr17:18251454-18251454|G/-|frameshift_variant;FLII|p.K628Rfs*27|1|0.37|ENSG00000177731|chr17:18249178-18249178|T/-|frameshift_variant	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MSMS	HCT116MG_D190212_S2	2	505.7612609863281	2	505.75241	1009.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.514	1	25.145	24.645	25.645	-0.36914								0	0	0	0.1323	1	9191	9191		52.268	12.311	1				9658	5471	5464	5502	9345	9345					-0.014098786998374635
ENQDQDEPFL	10	Unmodified	_ENQDQDEPFL_					0	0	0			REV__ENSG00000164168|ENST00000296582|TMEM184C	REV__ENSG00000164168|ENST00000296582|TMEM184C	MULTI-SECPEP	HCT116MG_D190212_S1	1	618.2725830078125	2	617.764757	1233.51496	0.50074	0.00030934	-2.5442	-0.0015717	-2.0435	-0.0012624	617.7636484867731	23.096	0.2083	23.096	23.001	23.21	0					5	3	2	0	0	0	0.2916	1	8211	8211		22.736	2.3217	1	1793400	+		9659	12986	5465	5503	9346	9346					-0.09245572083432307
ENQDQDEPFL	10	Unmodified	_ENQDQDEPFL_					0	0	0			REV__ENSG00000164168|ENST00000296582|TMEM184C	REV__ENSG00000164168|ENST00000296582|TMEM184C	MULTI-MATCH	HCT116MG_D190212_S2	2		2	617.764757	1233.51496	0.36969	0.00022838	-1.8967	-0.0011717	-1.5271	-0.00094336	617.7636139416015	23.605	0.15617	23.221	23.091	23.247	-0.38324	0.062513	0.00058678	NaN	29.082	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3091400	+		9660	12986	5465	5503							-0.09245572083432307
ENQDRPAPQ	9	Unmodified	_ENQDRPAPQ_					0	0	0		MYO18B|p.G487R|1|0.3|ENSG00000133454|chr22:25769375-25769375|G/A|missense_variant	MYO18B|p.G487R|1|0.3|ENSG00000133454|chr22:25769375-25769375|G/A|missense_variant	MYO18B|p.G487R|1|0.3|ENSG00000133454|chr22:25769375-25769375|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.7489624023438	2	527.749244	1053.48394	0.44453	0.0002346	-0.75957	-0.00040086	-0.31504	-0.00016626	527.7487341573853	16.998	0.25995	16.649	16.509	16.769	-0.34933					6	4	2	0	0	0	0.45684	1	5794	5794		19.362	3.2128	1	2375900			9661	9352	5466	5504	9347	9347					-0.04066680607024864
ENQPRLLLELL	11	Unmodified	_ENQPRLLLELL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;EXOC4|p.N439Ifs*15|1|0.39|ENSG00000131558|chr7:133475456-133475456|A/-|frameshift_variant;EXOC4|p.N439Kfs*28|1|0.17|ENSG00000131558|chr7:133475455-133475456|-/A|frameshift_variant;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MSMS	HCT116MG_D190212_S2	2	669.3912353515625	2	669.393002	1336.77145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.075	1	41.007	40.507	41.507	-0.068321								0	0	0	0.95273	1	15509	15509		4.897	1.9018	1				9662	3148	5467	5505	9348	9348					0.11653575211516909
ENQSGPPGSGP	11	Unmodified	_ENQSGPPGSGP_					0	0	0		SORBS2|p.A565Gfs*10|1|0.32|ENSG00000154556|chr4:185623723-185623724|-/C|frameshift_variant	SORBS2|p.A565Gfs*10|1|0.32|ENSG00000154556|chr4:185623723-185623724|-/C|frameshift_variant	SORBS2|p.A565Gfs*10|1|0.32|ENSG00000154556|chr4:185623723-185623724|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	513.728759765625	2	513.727978	1025.4414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.942	1	16.027	15.527	16.527	0.085424								0	0	0	0.91433	1	5254	5254		18.146	4.2403	1				9663	18184	5468	5506	9349	9349					-0.07030075735224273
ENQVQIYLFL	10	Unmodified	_ENQVQIYLFL_					0	0	0		ENST00000263688.3_1_1:172520746-172522484:+|nuORF	ENST00000263688.3_1_1:172520746-172522484:+|nuORF	ENST00000263688.3_1_1:172520746-172522484:+|nuORF	MSMS	HCT116MG_D190212_S1	1	633.8397827148438	2	633.840071	1265.66559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.603	1	21.603	21.103	22.103	0								0	0	0	0.90892	1	7608	7608		13.906	0	1				9664	6882	5469	5507	9350	9350					0.04338239366029484
ENRAAIRF	8	Unmodified	_ENRAAIRF_					0	0	0			REV__nc|ENSG00000172534|P51610-2|HCFC1	REV__nc|ENSG00000172534|P51610-2|HCFC1	MULTI-SECPEP	HCT116MG_D190212_S4	4	489.2342529296875	2	488.769783	975.525013	-0.083034	-4.0585E-05	-0.2186	-0.00010684	-0.30163	-0.00014743	488.76962198772134	32.57	0.20765	32.191	32.053	32.26	-0.37924					5	3	2	0	0	0	0.29402	1	11812	11812		16.942	3.4344	1	5258900	+		9665	13392	5470	5508	9351	9351					0.03627125223135863
ENRIAIAEA	9	Unmodified	_ENRIAIAEA_					0	0	0		tr|U7SZV7|U7SZV7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00961PE=4SV=1	tr|U7SZV7|U7SZV7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00961PE=4SV=1	tr|U7SZV7|U7SZV7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00961PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	493.76727294921875	2	493.766906	985.519259	0.48035	0.00023718	0.16652	8.2221E-05	0.64687	0.0003194	493.7669497010055	28.098	0.20802	28.098	27.956	28.164	0					5	3	2	0	0	0	0.22946	1	10246	10246		38.176	4.7307	1	6044500			9666	18538	5471	5509	9352	9352					0.025919819207956607
ENRKIRKERFK	11	Unmodified	_ENRKIRKERFK_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|14|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|14|1|sense	MSMS	HCT116MG_D190212_S2	2	752.4490966796875	2	752.446966	1502.87938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.224	1	41.156	40.656	41.656	-0.068199								0	0	0	0.95636	1	15570	15570		2.9952	0.49676	1		+		9667	16953	5472	5510	9353	9353					0.14805384585429238
ENRPSGLGSP	10	Unmodified	_ENRPSGLGSP_					0	0	0		ENST00000374514.7_1_1:24117678-24119183:+|nuORF	ENST00000374514.7_1_1:24117678-24119183:+|nuORF	ENST00000374514.7_1_1:24117678-24119183:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	507.2550048828125	2	507.254163	1012.49377	0.023123	1.1729E-05	0.28974	0.00014697	0.31286	0.0001587	507.2542209219866	23.329	0.73143	23.081	22.696	23.428	-0.24775					26	13	3	0	0	0	0.69965	1	8075	8075		20.415	1.1575	1	9613900			9668	7498	5473	5511	9354	9354					-0.011974926016137033
ENRQEEYYERR	11	Unmodified	_ENRQEEYYERR_					0	0	0			REV__ENSG00000165623|ENST00000378681|UCMA	REV__ENSG00000165623|ENST00000378681|UCMA	MSMS	HCT116MG_D190212_S2	2	786.3628540039062	2	786.363493	1570.71243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.455	1	20.075	19.575	20.575	-0.37949								0	0	0	0.95408	1	7149	7149		4.1895	0.90819	1		+		9669	13066	5474	5512	9355	9355					-0.05009552820774843
ENRRLKARR	9	Unmodified	_ENRRLKARR_					0	0	0			REV__PRRX1|p.F149L|1|0.29|ENSG00000116132|chr1:170726247-170726247|T/C|missense_variant	REV__PRRX1|p.F149L|1|0.29|ENSG00000116132|chr1:170726247-170726247|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	400.2447204589844	3	400.246167	1197.71667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.921	1	38.539	38.039	39.039	-0.38163								0	0	0	0.76954	1	14282	14282		2.4985	0	1		+		9670	17444	5475	5513	9356	9356					0.1257204597409327
ENRRRSFFRWI	11	Unmodified	_ENRRRSFFRWI_					0	0	0			REV__ARHGAP36|p.R163W|1|0.45|ENSG00000147256|chrX:131083901-131083901|C/T|missense_variant	REV__ARHGAP36|p.R163W|1|0.45|ENSG00000147256|chrX:131083901-131083901|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	783.7117309570312	2	783.923658	1565.83276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.583	1	41.514	41.014	42.014	-0.068199								0	0	0	0.95731	1	15717	15717		2.4985	1.169	1		+		9671	9979	5476	5514	9357	9357					0.07247944754180935
ENSVPPPPP	9	Unmodified	_ENSVPPPPP_					0	0	0		nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	MSMS	HCT116MG_D190212_S1	1	467.2962646484375	2	467.23745	932.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.184	1	22.184	21.684	22.684	0								0	0	0	0.71969	1	7842	7842		18.135	3.5533	1				9672	5929	5477	5515	9358	9358					-0.008584943735286288
ENSVSRERSEP	11	Unmodified	_ENSVSRERSEP_					0	0	0		nc|ENSG00000181036|Q6DN72-4|FCRL6;nc|ENSG00000181036|Q6DN72-3|FCRL6;nc|ENSG00000181036|Q6DN72-2|FCRL6;ENSG00000181036|ENST00000368106|FCRL6	nc|ENSG00000181036|Q6DN72-4|FCRL6	nc|ENSG00000181036|Q6DN72-4|FCRL6	MSMS	HCT116MG_D190212_S3	3	645.3568725585938	2	645.307655	1288.60076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.283	1	20.331	19.831	20.831	0.048107								0	0	0	0.94012	1	7006	7006		11.495	3.3392	1				9673	5621	5478	5516	9359	9359					-0.03199987177890762
ENTASFLML	9	Unmodified	_ENTASFLML_					0	0	0		ENST00000409573.6_1_2:112989446-112990884:-|nuORF	ENST00000409573.6_1_2:112989446-112990884:-|nuORF	ENST00000409573.6_1_2:112989446-112990884:-|nuORF	MSMS	HCT116MG_D190212_S3	3	513.2545776367188	2	513.252243	1024.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.354	1	36.054	35.554	36.554	-0.30042								0	0	0	0.76592	1	13430	13430		15.248	2.206	1				9674	7731	5479	5517	9360	9360					-0.021332984196760663
ENTVLYLQVA	10	Unmodified	_ENTVLYLQVA_					0	0	0		ENST00000467738.1_1_3:58490953-58512473:-|nuORF;ENSG00000168306|ENST00000302819|ACOX2	ENST00000467738.1_1_3:58490953-58512473:-|nuORF	ENST00000467738.1_1_3:58490953-58512473:-|nuORF	MSMS	HCT116MG_D190212_S1	1	575.3106079101562	2	575.311146	1148.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.495	1	40.495	39.995	40.995	0								0	0	0	0.88085	1	15222	15222		18.373	3.1246	1				9675	4999	5480	5518	9361	9361					0.03937977440614304
ENVALVLERL	10	Unmodified	_ENVALVLERL_					0	0	0		ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.L151*|1|0.19|ENSG00000188994|chr6:87218640-87218640|T/-|frameshift_variant;ZNF292|p.V722Sfs*7|1|0.25|ENSG00000188994|chr6:87255786-87255787|-/A|frameshift_variant	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	578.3384399414062	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.511	1	37.511	37.011	38.011	0								0	0	0	0.93938	1	14017	14017		7.1017	0.89594	1				9676	6012	5481	5519	9362	9362					0.09477659085882806
ENVALVLERL	10	Unmodified	_ENVALVLERL_					0	0	0		ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.L151*|1|0.19|ENSG00000188994|chr6:87218640-87218640|T/-|frameshift_variant;ZNF292|p.V722Sfs*7|1|0.25|ENSG00000188994|chr6:87255786-87255787|-/A|frameshift_variant	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	578.6472778320312	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.571	1	37.468	36.968	37.968	-0.10318								0	0	0	0.88085	1	14087	14087		18.373	3.1246	1				9677	6012	5481	5519	9363	9363					0.09477659085882806
ENVCCMYSA	9	Unmodified	_ENVCCMYSA_					0	0	0		HOXC10|p.S210Qfs*4|1|0.28|ENSG00000180818|chr12:53985881-53985882|-/C|frameshift_variant;HOXC10|p.K203Qfs*11|1|0.28|ENSG00000180818|chr12:53985860-53985861|-/C|frameshift_variant;ENSG00000180818|ENST00000303460|HOXC10	HOXC10|p.S210Qfs*4|1|0.28|ENSG00000180818|chr12:53985881-53985882|-/C|frameshift_variant	HOXC10|p.S210Qfs*4|1|0.28|ENSG00000180818|chr12:53985881-53985882|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	510.68878173828125	2	510.185188	1018.35582	0.071916	3.669E-05	2.6576	0.0013559	2.7296	0.0013926	510.18532834155195	30.997	0.46958	30.736	30.552	31.022	-0.26071					19	8	4	0	0	0	0.66792	1	11316	11316		7.2892	0.56607	1	9229900			9678	5611	5482	5520	9364	9364					-0.1526202350841004
ENVLAIISL	9	Unmodified	_ENVLAIISL_					0	0	0		THOC1|p.N119Mfs*26|1|0.36|ENSG00000079134|chr18:260205-260205|T/-|frameshift_variant;ENST00000582313.5_1_18:245829-268019:-|nuORF;THOC1|p.D370Mfs*9|1|0.31|ENSG00000079134|chr18:225119-225119|G/-|frameshift_variant;nc|ENSG00000079134|Q96FV9-2|THOC1;THOC1|p.I431Nfs*6|1|0.23|ENSG00000079134|chr18:224096-224097|-/T|frameshift_variant;ENSG00000079134|ENST00000261600|THOC1	THOC1|p.N119Mfs*26|1|0.36|ENSG00000079134|chr18:260205-260205|T/-|frameshift_variant	THOC1|p.N119Mfs*26|1|0.36|ENSG00000079134|chr18:260205-260205|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	971.57763671875	1	971.577174	970.569897	0.7154	0.00069507	-0.070009	-6.8019E-05	0.64539	0.00062705	971.5770088233211	55.851	0.30812	55.665	55.587	55.895	-0.18565					15	5	4	0	0	0	0.026999	1	21559	21559		89.401	4.1287	1	611400000			9679	1377	5483	5521	9365	9365					0.08343511245811897
ENVQQPSY	8	Unmodified	_ENVQQPSY_					0	0	0			REV__MYRF|p.K745Rfs*45|1|0.07|ENSG00000124920|chr11:61779550-61779550|C/-|frameshift_variant	REV__MYRF|p.K745Rfs*45|1|0.07|ENSG00000124920|chr11:61779550-61779550|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	483.4409484863281	2	482.722164	963.429775	0.13143	6.3446E-05	0.028687	1.3848E-05	0.16012	7.7294E-05	482.72212690690424	28.614	1.0393	28.282	27.752	28.791	-0.33138					32	19	2	0	0	0	0.79062	1	10365	10365		12.532	0	1	5793200	+		9680	11801	5484	5522	9366	9366					-0.05340272758564879
ENVSNEAERIQ	11	Unmodified	_ENVSNEAERIQ_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.Q2186Sfs*19|1|0.31|ENSG00000173230|chr3:121693952-121693952|G/-|frameshift_variant;GOLGB1|p.K2450Rfs*27|1|0.37|ENSG00000173230|chr3:121692000-121692000|T/-|frameshift_variant;GOLGB1|p.D2495Tfs*21|1|0.22|ENSG00000173230|chr3:121691867-121691867|T/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	HCT116MG_D190212_S3	3	430.2294616699219	3	430.209112	1287.60551	0.1261	5.4248E-05	2.2865	0.00098368	2.4126	0.0010379	430.2104614123937	22.108	0.20813	22.108	21.938	22.146	0.00074387					7	3	3	0	0	0	0.36536	1	7712	7712		0.84494	0	1	4350600			9681	5280	5485	5523	9367	9367					-0.02679103035143271
ENVVPLASV	9	Unmodified	_ENVVPLASV_					0	0	0			REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3	REV__nc|ENSG00000115592|Q9UGI9-2|PRKAG3	MULTI-MSMS	HCT116MG_D190212_S3	3	464.26104736328125	2	464.260925	926.507297	0.35101	0.00016296	-0.17541	-8.1437E-05	0.1756	8.1524E-05	464.2607922494247	33.621	0.46679	33.331	33.148	33.615	-0.29013					20	8	4	0	0	0	0.16144	1	12350	12350		46.021	0	1	47302000	+		9682	11549	5486	5524	9368	9368					0.04110365177609765
ENYEKTKA	8	Unmodified	_ENYEKTKA_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant;NEB|p.Y635H|1|0.12|ENSG00000183091|chr2:151692356-151692356|A/G|missense_variant;ENST00000489048.1_1_2:152547165-152552100:-|nuORF;NEB|p.P541Lfs*16|1|0.49|ENSG00000183091|chr2:151695630-151695630|G/-|frameshift_variant;NEB|p.K715Nfs*8|1|0.06|ENSG00000183091|chr2:151691930-151691930|T/-|frameshift_variant;NEB|p.P928Lfs*29|1|0.38|ENSG00000183091|chr2:151684830-151684830|G/-|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.2047119140625	2	491.745639	981.476725	0.18097	8.8989E-05	-0.56156	-0.00027615	-0.3806	-0.00018716	491.74524279950407	21.63	0.20761	21.245	21.115	21.323	-0.38503					7	3	3	0	0	0	0.31097	1	7605	7605		1.6526	0.17072	1	9033500			9683	5702	5487	5525	9369	9369					-0.014754132074131121
ENYTEELYY	9	Unmodified	_ENYTEELYY_					0	0	0			REV__tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	REV__tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	612.1876220703125	2	612.258776	1222.503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.918	1	32.707	32.207	33.207	-0.21135								0	0	0	0.76575	1	12197	12197		15.847	1.0089	1		+		9684	17857	5488	5526	9370	9370					-0.09935188826580088
ENYTSSFFIRD	11	Unmodified	_ENYTSSFFIRD_					0	0	0		ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	MSMS	HCT116MG_D190212_S2	2	690.1517333984375	2	689.817324	1377.62009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.104	1	39.024	38.524	39.524	-0.080257								0	0	0	0.85129	1	14707	14707		26.268	9.1552	1				9685	2379	5489	5527	9371	9371					-0.05361030886979279
EPAAGAAGPPQ	11	Unmodified	_EPAAGAAGPPQ_					0	0	0			REV__ENSG00000165312|ENST00000376495|OTUD1	REV__ENSG00000165312|ENST00000376495|OTUD1	MULTI-MSMS	HCT116MG_D190212_S4	4	483.2378234863281	2	483.237981	964.461409	0.064006	3.093E-05	0.2573	0.00012433	0.3213	0.00015526	483.2380860452115	18.781	0.51984	18.6	18.355	18.875	-0.18051					14	9	2	0	0	0	0.3003	1	6311	6311		63.961	8.4578	1	4892900	+		9686	13047	5490	5528	9372	9372					-0.022242800046115008
EPAAGAAGPPQ	11	Unmodified	_EPAAGAAGPPQ_					0	0	0			REV__ENSG00000165312|ENST00000376495|OTUD1	REV__ENSG00000165312|ENST00000376495|OTUD1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	483.237981	964.461409	0.064006	3.093E-05	0.2573	0.00012433	0.3213	0.00015526	483.2380860452115	18.781	0.51984	18.6	18.355	18.875	-0.18051	-0.046139	0.00012882	NaN	63.961	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4892900	+		9687	13047	5490	5528							-0.022242800046115008
EPAATERPA	9	Unmodified	_EPAATERPA_					0	0	0		ENSG00000092051|ENST00000356300|JPH4	ENSG00000092051|ENST00000356300|JPH4	ENSG00000092051|ENST00000356300|JPH4	MULTI-SECPEP	HCT116MG_D190212_S3	3	470.7221374511719	2	471.237981	940.461409	0.18505	8.7204E-05	-0.37668	-0.0001775	-0.19162	-9.0301E-05	471.2376982088595	22.171	0.20825	22.172	22.042	22.25	0.00074577					5	3	2	0	0	0	0.21635	1	7769	7769		23.79	7.6407	1	3250500			9688	1572	5491	5529	9373	9373					-0.01120280004624874
EPAHPSSSSE	10	Unmodified	_EPAHPSSSSE_					0	0	0			REV__ENSG00000125850|ENST00000278780|OVOL2	REV__ENSG00000125850|ENST00000278780|OVOL2	MULTI-MSMS	HCT116MG_D190212_S1	1	514.2430419921875	2	514.219985	1026.42542	0.27075	0.00013922	0.078252	4.0239E-05	0.349	0.00017946	514.2198714405613	19.137	0.31234	19.137	18.975	19.287	0					10	5	3	0	0	0	0.48679	1	6655	6655		36.127	3.8215	1	5534600	+		9689	11820	5492	5530	9374	9374					-0.08673781972129291
EPAHPSSSSE	10	Unmodified	_EPAHPSSSSE_					0	0	0			REV__ENSG00000125850|ENST00000278780|OVOL2	REV__ENSG00000125850|ENST00000278780|OVOL2	MULTI-SECPEP	HCT116MG_D190212_S4	4	514.2439575195312	2	514.219985	1026.42542	0.20133	0.00010353	0.33742	0.00017351	0.53875	0.00027704	514.2202343051778	19.217	0.20796	19.03	18.921	19.129	-0.18674					5	3	2	0	0	0	0.26351	1	6491	6491		29.082	0	1	2022200	+		9690	11820	5492	5530	9375	9375					-0.08673781972129291
EPAPTTKEPAP	11	Unmodified	_EPAPTTKEPAP_					0	0	0		PRG4|p.K614Qfs*25|1|0.25|ENSG00000116690|chr1:186307553-186307554|-/C|frameshift_variant;PRG4|p.K800Rfs*112|1|0.23|ENSG00000116690|chr1:186308112-186308112|C/-|frameshift_variant;PRG4|p.K1030Nfs*14|1|0.16|ENSG00000116690|chr1:186308804-186308804|A/-|frameshift_variant;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4	PRG4|p.K614Qfs*25|1|0.25|ENSG00000116690|chr1:186307553-186307554|-/C|frameshift_variant	PRG4|p.K614Qfs*25|1|0.25|ENSG00000116690|chr1:186307553-186307554|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	569.7946166992188	2	569.292953	1136.57135	0.45321	0.00025801	-0.43549	-0.00024792	0.017716	1.0086E-05	569.2926379031226	17.02	0.31298	17.02	16.889	17.202	0					6	5	2	0	0	0	0.36495	1	5785	5785		2.9952	0	1	2764400			9691	2529	5493	5531	9376	9376					0.008531005438953798
EPAQAEPG	8	Unmodified	_EPAQAEPG_					0	0	0		ENST00000478388.1_1_6:31999390-31999952:+|nuORF	ENST00000478388.1_1_6:31999390-31999952:+|nuORF	ENST00000478388.1_1_6:31999390-31999952:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	798.3200073242188	1	798.362824	797.355547	0.85508	0.00068267	-0.073567	-5.8733E-05	0.78152	0.00062393	798.3625416158883	19.2	1.9113	19.013	17.936	19.847	-0.18674					57	36	2	0	0	0	0.41924	1	6126	6126		48.346	3.9388	1	4962200			9692	8220	5494	5532	9377	9377					-0.05123615850095575
EPAVPAPL	8	Unmodified	_EPAVPAPL_					0	0	0		ENSG00000180353|ENST00000314583|HCLS1	ENSG00000180353|ENST00000314583|HCLS1	ENSG00000180353|ENST00000314583|HCLS1	MSMS	HCT116MG_D190212_S4	4	397.2253112792969	2	397.226354	792.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.719	1	43.345	42.845	43.845	-0.37433								0	0	0	0.8837	1	16080	16080		2.5775	0	1				9693	5594	5495	5533	9378	9378					0.03363325948691909
EPCCCHTCCCS	11	Unmodified	_EPCCCHTCCCS_					0	0	0			REV__ENSG00000204323|ENST00000375215|SMIM5	REV__ENSG00000204323|ENST00000375215|SMIM5	MSMS	HCT116MG_D190212_S2	2	594.657958984375	2	594.6571	1187.29965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8676	1	9.6029	9.1029	10.103	-0.26472								0	0	0	0.96208	1	3098	3098		0	0	1		+		9694	14190	5496	5534	9379	9379					-0.2865105900339131
EPDAMEEAEGP	11	Unmodified	_EPDAMEEAEGP_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	HCT116MG_D190212_S3	3	587.7730102539062	2	587.732068	1173.44958	0.61445	0.00036113	0.22281	0.00013095	0.83726	0.00049208	587.732175063563	25.492	0.36389	25.386	25.204	25.568	-0.10618					13	6	3	0	0	0	0.35938	1	9058	9058		7.609	1.8771	1	20337000	+		9695	12349	5497	5535	9380	9380					-0.13020309600779
EPDCCDDE	8	Unmodified	_EPDCCDDE_					0	0	0		DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	463.1310729980469	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.978	1	62.978	62.478	63.478	0								0	0	0	0.8837	1	24328	24328		0.69038	0.69038	1				9696	671	5498	5536	9381	9381					-0.2174411655798849
EPDCCDDE	8	Unmodified	_EPDCCDDE_					0	0	0		DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	463.13104248046875	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.54	1	62.409	61.909	62.909	-0.13085								0	0	0	0.8837	1	24242	24242		0.69038	0.69038	1				9697	671	5498	5536	9382	9382					-0.2174411655798849
EPDCCDDE	8	Unmodified	_EPDCCDDE_					0	0	0		DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	463.1307373046875	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.127	1	62.998	62.498	63.498	-0.12924								0	0	0	0.8837	1	24475	24475		0.69038	0.69038	1				9698	671	5498	5536	9383	9383					-0.2174411655798849
EPDCCDDE	8	Unmodified	_EPDCCDDE_					0	0	0		DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	463.1310119628906	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.13307	1	-0.13149	-0.63149	0.36851	-0.26456								0	0	0	0.8837	1	53	53		0	0	1				9699	671	5498	5536	9384	9384					-0.2174411655798849
EPDCCDDE	8	Unmodified	_EPDCCDDE_					0	0	0		DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	463.13092041015625	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9623	1	7.7309	7.2309	8.2309	-0.23148								0	0	0	0.8837	1	2434	2434		0	0	1				9700	671	5498	5536	9385	9385					-0.2174411655798849
EPDCCDDE	8	Unmodified	_EPDCCDDE_					0	0	0		DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	463.130615234375	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.531	1	11.35	10.85	11.85	-0.18135								0	0	0	0.8837	1	3564	3564		0.79363	0.79363	1				9701	671	5498	5536	9386	9386					-0.2174411655798849
EPDCCDDE	8	Unmodified	_EPDCCDDE_					0	0	0		DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	463.1311950683594	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.842	1	14.682	14.182	15.182	-0.16089								0	0	0	0.8837	1	4736	4736		0	0	1				9702	671	5498	5536	9387	9387					-0.2174411655798849
EPDCCDDE	8	Unmodified	_EPDCCDDE_					0	0	0		DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	463.13134765625	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.039	1	15.875	15.375	16.375	-0.16364								0	0	0	0.8837	1	5219	5219		0	0	1				9703	671	5498	5536	9388	9388					-0.2174411655798849
EPDCCDDE	8	Unmodified	_EPDCCDDE_					0	0	0		DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	DHX57|p.N144D|1|0.34|ENSG00000163214|chr2:38862287-38862287|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	463.1307678222656	2	463.131133	924.247713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.019	1	61.765	61.265	62.265	-0.25457								0	0	0	0.8837	1	23412	23412		0	0	1				9704	671	5498	5536	9389	9389					-0.2174411655798849
EPDLAPAIKY	10	Unmodified	_EPDLAPAIKY_					0	0	0		ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	MULTI-MSMS	HCT116MG_D190212_S2	2	558.8005981445312	2	558.800414	1115.58628	0.47818	0.00026721	-0.18778	-0.00010493	0.2904	0.00016227	558.8002898470791	56.261	0.36049	56.078	55.847	56.207	-0.18261					9	6	2	0	0	0	0.37629	1	21729	21729		43.858	2.0187	1	60650000			9705	6592	5499	5537	9390	9390					0.033105924118899566
EPEAYYSSWD	10	Unmodified	_EPEAYYSSWD_					0	0	0			REV__nc|ENSG00000125798|Q9Y261|FOXA2	REV__nc|ENSG00000125798|Q9Y261|FOXA2	MULTI-MSMS	HCT116MG_D190212_S3	3	624.2366943359375	2	623.748576	1245.4826	0.34227	0.00021349	-0.60383	-0.00037664	-0.26156	-0.00016314	623.7481377905054	16.303	0.20792	16.388	16.237	16.445	0.085424					5	3	2	0	0	0	0.86862	1	5392	5392		6.2058	1.3088	1	520870	+		9706	11819	5500	5538	9391	9391					-0.1303235948641941
EPEEAWEVYKQ	11	Unmodified	_EPEEAWEVYKQ_					0	0	0		ENST00000523638.5_1_19:37006542-37016108:-|nuORF	ENST00000523638.5_1_19:37006542-37016108:-|nuORF	ENST00000523638.5_1_19:37006542-37016108:-|nuORF	MSMS	HCT116MG_D190212_S1	1	704.3076782226562	2	704.324982	1406.63541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.11	1	43.11	42.61	43.61	0								0	0	0	0.9465	1	16278	16278		8.1555	0	1				9707	8572	5501	5539	9392	9392					-0.05164164089819678
EPEMKIIIR	9	Unmodified	_EPEMKIIIR_					0	0	0			REV__ZBTB1|p.K524Sfs*25|1|0.31|ENSG00000126804|chr14:64523069-64523069|A/-|frameshift_variant	REV__ZBTB1|p.K524Sfs*25|1|0.31|ENSG00000126804|chr14:64523069-64523069|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	564.5744018554688	2	564.825909	1127.63727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.902	1	10.713	10.213	11.213	-0.18973								0	0	0	0.7701	1	3357	3357		0.52476	0	1		+		9708	11846	5502	5540	9393	9393					0.07855218185113699
EPEMVCIDSY	10	Oxidation (M)	_EPEM(Oxidation (M))VCIDSY_		EPEM(1)VCIDSY		EPEM(52)VCIDSY	0	0	1		ENST00000448649.1_1_21:33869131-33869353:+|nuORF	ENST00000448649.1_1_21:33869131-33869353:+|nuORF	ENST00000448649.1_1_21:33869131-33869353:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	601.2418212890625	2	601.241215	1200.46788	1.1382	0.00068433	-0.21083	-0.00012676	0.92736	0.00055756	601.2411262600859	18.149	0.36137	17.974	17.792	18.153	-0.17501					13	6	3	0	0	0	0.28012	1	6076	6076		52.268	28.248	1	12351000			9709	7970	5503	5541	9394	9394		142			-0.12433890950410387
EPENGPKEGP	10	Unmodified	_EPENGPKEGP_					0	0	0			REV__ENSG00000231824|ENST00000434239|AKAIN1	REV__ENSG00000231824|ENST00000434239|AKAIN1	MSMS	HCT116MG_D190212_S3	3	527.2473754882812	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.052	1	29.81	29.31	30.31	-0.24153								0	0	0	0.81962	1	10938	10938		26.268	4.5215	1		+		9710	14322	5504	5542	9395	9395					-0.046686185583666884
EPGDCNCN	8	Unmodified	_EPGDCNCN_					0	0	0			REV__TET3|p.Q379Rfs*162|2|0.23|ENSG00000187605|chr2:74047047-74047047|C/-|frameshift_variant	REV__TET3|p.Q379Rfs*162|2|0.23|ENSG00000187605|chr2:74047047-74047047|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	426.13726806640625	2	426.136553	850.258552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.81299	1	0.54843	0.048431	1.0484	-0.26456								0	0	0	0.8837	1	260	260		0.79363	0.79363	1		+		9711	13926	5505	5543	9396	9396					-0.17256669393054835
EPGFLKRWWPQ	11	Unmodified	_EPGFLKRWWPQ_					0	0	0			REV__ENST00000331369.5_1_2:84517942-84518395:+|nuORF	REV__ENST00000331369.5_1_2:84517942-84518395:+|nuORF	MSMS	HCT116MG_D190212_S3	3	722.3831176757812	2	722.380229	1442.7459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.094	1	35.794	35.294	36.294	-0.30042								0	0	0	0.9465	1	13325	13325		8.1555	2.4237	1		+		9712	14933	5506	5544	9397	9397					0.04224145479747676
EPGPPGSPGQL	11	Unmodified	_EPGPPGSPGQL_					0	0	0			REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-MSMS	HCT116MG_D190212_S4	4	518.2587280273438	2	518.258914	1034.50327	-0.080521	-4.1731E-05	0.084844	4.3971E-05	0.0043229	2.2404E-06	518.2588981183981	17.307	1.2961	17.137	16.448	17.744	-0.17046					42	24	2	0	0	0	0.58525	1	5721	5721		37.075	3.6297	1	1923000	+		9713	13350	5507	5545	9398	9398					-0.01259724316082611
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	467.1405944824219	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7676	1	1.7676	1.2676	2.2676	0								0	0	0	0.8837	1	535	535		0.69038	0.69038	1		+		9714	13724	5508	5546	9399	9399					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	467.1396484375	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3784	1	3.3784	2.8784	3.8784	0								0	0	0	0.8837	1	1016	1016		0.69038	0.69038	1		+		9715	13724	5508	5546	9400	9400					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	467.14007568359375	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7839	1	6.7839	6.2839	7.2839	0								0	0	0	0.8837	1	2046	2046		0.69038	0.69038	1		+		9716	13724	5508	5546	9401	9401					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	467.1400146484375	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0658	1	6.8686	6.3686	7.3686	-0.19725								0	0	0	0.8837	1	2216	2216		0.69038	0.69038	1		+		9717	13724	5508	5546	9402	9402					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.140380859375	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5237	1	3.5601	3.0601	4.0601	0.036387								0	0	0	0.8837	1	1062	1062		0.69038	0.69038	1		+		9718	13724	5508	5546	9403	9403					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.1420593261719	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0361	1	5.0586	4.5586	5.5586	0.022513								0	0	0	0.8837	1	1515	1515		0.69038	0.69038	1		+		9719	13724	5508	5546	9404	9404					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.1403503417969	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6048	1	5.6223	5.1223	6.1223	0.017489								0	0	0	0.8837	1	1693	1693		0.69038	0.69038	1		+		9720	13724	5508	5546	9405	9405					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.1439514160156	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7939	1	6.8078	6.3078	7.3078	0.013901								0	0	0	0.8837	1	2055	2055		0.69038	0.69038	1		+		9721	13724	5508	5546	9406	9406					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.1408386230469	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.313	1	7.3269	6.8269	7.8269	0.013901								0	0	0	0.8837	1	2211	2211		0.69038	0.69038	1		+		9722	13724	5508	5546	9407	9407					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.1401672363281	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9439	1	7.9604	7.4604	8.4604	0.016533								0	0	0	0.8837	1	2404	2404		0.69038	0.69038	1		+		9723	13724	5508	5546	9408	9408					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.1400451660156	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.112	1	10.145	9.6446	10.645	0.032559								0	0	0	0.8837	1	3057	3057		0.69038	0.69038	1		+		9724	13724	5508	5546	9409	9409					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.1421813964844	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.289	1	12.352	11.852	12.852	0.06246								0	0	0	0.8837	1	3822	3822		0.69038	0.69038	1		+		9725	13724	5508	5546	9410	9410					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.1396789550781	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.104	1	62.881	62.381	63.381	-0.22315								0	0	0	0.8837	1	24100	24100		0.69038	0.69038	1		+		9726	13724	5508	5546	9411	9411					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.1394958496094	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.137	1	63.932	63.432	64.432	-0.20569								0	0	0	0.8837	1	24421	24421		0.69038	0.69038	1		+		9727	13724	5508	5546	9412	9412					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	467.13946533203125	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.703	1	64.502	64.002	65.002	-0.2009								0	0	0	0.8837	1	24591	24591		0.69038	0.69038	1		+		9728	13724	5508	5546	9413	9413					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1400451660156	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.3825	1	0.11794	-0.38206	0.61794	-0.26456								0	0	0	0.8837	1	130	130		0.69038	0.69038	1		+		9729	13724	5508	5546	9414	9414					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1409912109375	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9431	1	1.6786	1.1786	2.1786	-0.26456								0	0	0	0.8837	1	595	595		0.69038	0.69038	1		+		9730	13724	5508	5546	9415	9415					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1407775878906	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2381	1	3.9735	3.4735	4.4735	-0.26456								0	0	0	0.8837	1	1297	1297		0.69038	0.69038	1		+		9731	13724	5508	5546	9416	9416					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1395568847656	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6564	1	4.3919	3.8919	4.8919	-0.26456								0	0	0	0.8837	1	1422	1422		0.69038	0.69038	1		+		9732	13724	5508	5546	9417	9417					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1402587890625	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.797	1	5.5354	5.0354	6.0354	-0.26151								0	0	0	0.8837	1	1771	1771		0.69038	0.69038	1		+		9733	13724	5508	5546	9418	9418					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1400146484375	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.7739	1	7.5323	7.0323	8.0323	-0.24153								0	0	0	0.8837	1	2375	2375		0.69038	0.69038	1		+		9734	13724	5508	5546	9419	9419					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.102294921875	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9048	1	8.6841	8.1841	9.1841	-0.22071								0	0	0	0.8837	1	2723	2723		0.69038	0.69038	1		+		9735	13724	5508	5546	9420	9420					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1405944824219	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5569	1	9.3472	8.8472	9.8472	-0.20971								0	0	0	0.8837	1	2920	2920		0.69038	0.69038	1		+		9736	13724	5508	5546	9421	9421					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1427917480469	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.788	1	12.619	12.119	13.119	-0.16903								0	0	0	0.8837	1	3984	3984		0.69038	0.69038	1		+		9737	13724	5508	5546	9422	9422					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.14093017578125	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.096	1	13.935	13.435	14.435	-0.16089								0	0	0	0.8837	1	4450	4450		0.69038	0.69038	1		+		9738	13724	5508	5546	9423	9423					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.14019775390625	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.606	1	62.357	61.857	62.857	-0.24919								0	0	0	0.8837	1	23641	23641		0.69038	0.088878	1		+		9739	13724	5508	5546	9424	9424					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1394348144531	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.092	1	63.858	63.358	64.358	-0.23411								0	0	0	0.8837	1	24138	24138		0.69038	0.69038	1		+		9740	13724	5508	5546	9425	9425					-0.20480990601242866
EPHCDCDD	8	Unmodified	_EPHCDCDD_					0	0	0			REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	REV__TTC3|p.E779Kfs*5|2|0.34|ENSG00000182670|chr21:37151943-37151943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.1404113769531	2	467.139292	932.264032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.949	1	64.718	64.218	65.218	-0.2319								0	0	0	0.8837	1	24410	24410		0.69038	0.69038	1		+		9741	13724	5508	5546	9426	9426					-0.20480990601242866
EPHHLLFVMAW	11	Unmodified	_EPHHLLFVMAW_					0	0	0			REV__CYP21A2|p.V305M|1|0.41|ENSG00000231852|chr6:32040179-32040179|G/A|missense_variant	REV__CYP21A2|p.V305M|1|0.41|ENSG00000231852|chr6:32040179-32040179|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	690.3497314453125	2	690.350083	1378.68561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.968	1	42.663	42.163	43.163	-0.30472								0	0	0	0.92235	1	16023	16023		17.113	0.96379	1		+		9742	10320	5509	5547	9427	9427					0.011417118250165004
EPHLHSVGTEP	11	Unmodified	_EPHLHSVGTEP_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	HCT116MG_D190212_S2	2	401.1970520019531	3	401.531527	1201.57275	-0.064114	-2.5744E-05	-0.41599	-0.00016703	-0.48011	-0.00019278	401.8656099931674	19.724	0.20836	19.349	19.246	19.455	-0.37503					5	3	2	0	0	0	0.3642	1	6891	6891		9.7643	0.788	1	2669200	+		9743	14113	5510	5548	9428	9428					-0.019972653673448804
EPHVPPVHDRM	11	Unmodified	_EPHVPPVHDRM_					0	0	0			REV__ENSG00000181045|ENST00000361193|SLC26A11	REV__ENSG00000181045|ENST00000361193|SLC26A11	MSMS	HCT116MG_D190212_S3	3	657.3243408203125	2	657.324596	1312.63464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.879	1	44.57	44.07	45.07	-0.30927								0	0	0	0.94145	1	16787	16787		10.8	1.4164	1		+		9744	13680	5511	5549	9429	9429					-0.009172372198690937
EPHVPPVHDRM	11	Unmodified	_EPHVPPVHDRM_					0	0	0			REV__ENSG00000181045|ENST00000361193|SLC26A11	REV__ENSG00000181045|ENST00000361193|SLC26A11	MSMS	HCT116MG_D190212_S4	4	657.32421875	2	657.324596	1312.63464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.777	1	42.403	41.903	42.903	-0.37493								0	0	0	0.94145	1	15735	15735		10.8	1.4164	1		+		9745	13680	5511	5549	9430	9430					-0.009172372198690937
EPHVPPVHDRM	11	Unmodified	_EPHVPPVHDRM_					0	0	0			REV__ENSG00000181045|ENST00000361193|SLC26A11	REV__ENSG00000181045|ENST00000361193|SLC26A11	MSMS	HCT116MG_D190212_S4	4	657.3239135742188	2	657.324596	1312.63464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.558	1	44.184	43.684	44.684	-0.37326								0	0	0	0.94145	1	16420	16420		10.8	1.2555	1		+		9746	13680	5511	5549	9431	9431					-0.009172372198690937
EPKKKNNSVK	10	Unmodified	_EPKKKNNSVK_					0	0	0			REV__ENSG00000088325|ENST00000300403|TPX2	REV__ENSG00000088325|ENST00000300403|TPX2	MSMS	HCT116MG_D190212_S1	1	586.3442993164062	2	586.343312	1170.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.815	1	31.815	31.315	32.315	0								0	0	0	0.92573	1	11719	11719		10.151	1.995	1		+		9747	10956	5512	5550	9432	9432					0.09356177317408765
EPKKVIRPTRP	11	Unmodified	_EPKKVIRPTRP_					0	0	0			REV__ENSG00000142149|ENST00000270112|HUNK	REV__ENSG00000142149|ENST00000270112|HUNK	MSMS	HCT116MG_D190212_S1	1	440.9417419433594	3	440.941861	1319.80375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.018	1	22.018	21.518	22.518	0								0	0	0	0.94942	1	7775	7775		3.3557	0.51244	1		+		9748	12344	5513	5551	9433	9433					0.15664407405165548
EPLKSHMWYFR	11	Unmodified	_EPLKSHMWYFR_					0	0	0			REV__ENSG00000169371|ENST00000308588|SNUPN	REV__ENSG00000169371|ENST00000308588|SNUPN	MSMS	HCT116MG_D190212_S4	4	747.3738403320312	2	747.371546	1492.72854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.3	1	15.138	14.638	15.638	-0.16173								0	0	0	0.95408	1	4921	4921		4.1895	1.1943	1		+		9749	13239	5514	5552	9434	9434					0.0018848188242372999
EPLPFLKFIN	10	Unmodified	_EPLPFLKFIN_					0	0	0		ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A;ENST00000570311.1_1_17:45097119-45126782:+|nuORF;LRRC37A3|p.K1304Nfs*11|2|0.36|ENSG00000176809|chr17:64860234-64860234|T/-|frameshift_variant;LRRC37A3|p.F1359Cfs*8|1|0.04|ENSG00000176809|chr17:64860070-64860071|-/ACACAAACTAC|frameshift_variant;ENSG00000176809|ENST00000584306|LRRC37A3	ENSG00000238083|ENST00000576629|LRRC37A2	ENSG00000238083|ENST00000576629|LRRC37A2	MSMS	HCT116MG_D190212_S1	1	609.349365234375	2	609.350074	1216.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.565	1	49.565	49.065	50.065	0								0	0	0	0.95648	1	18890	18890		3.2813	0	1				9750	5429	5515	5553	9435	9435					0.0859203509667168
EPLQDPNWPP	10	Unmodified	_EPLQDPNWPP_					0	0	0		nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522	nc|ENSG00000162522|Q9P206|NHSL3	nc|ENSG00000162522|Q9P206|NHSL3	MSMS	HCT116MG_D190212_S1	1	398.1922302246094	3	398.192623	1191.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.664	1	26.664	26.164	27.164	0								0	0	0	0.93854	1	9644	9644		3.8763	1.033	1				9751	4529	5516	5554	9436	9436					-0.032077662532856266
EPLQPRPLRKL	11	Unmodified	_EPLQPRPLRKL_					0	0	0			REV__AluJb_dup87692|chr12:125798275-125798456:-|1.5878392036766538|0.000958979254526|10.69|371.0|11|1|anti-sense	REV__AluJb_dup87692|chr12:125798275-125798456:-|1.5878392036766538|0.000958979254526|10.69|371.0|11|1|anti-sense	MSMS	HCT116MG_D190212_S1	1	673.919189453125	2	673.916978	1345.8194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.434	1	20.434	19.934	20.934	0								0	0	0	0.95113	1	7141	7141		5.7319	0.43497	1		+		9752	9920	5517	5555	9437	9437					0.16032693922193175
EPPGPGEY	8	Unmodified	_EPPGPGEY_					0	0	0			REV__nc|ENSG00000243364|P52798-2|EFNA4	REV__nc|ENSG00000243364|P52798-2|EFNA4	MULTI-MSMS	HCT116MG_D190212_S2	2	845.3681640625	1	845.367575	844.360298	0.6862	0.00058009	-0.068276	-5.7718E-05	0.61793	0.00052238	845.3676051743247	20.429	0.26585	20.05	19.917	20.183	-0.37949					7	4	2	0	0	0	0.50777	1	7161	7161		40.449	0	1	16701000	+		9753	14363	5518	5556	9438	9438					-0.06810731707332707
EPQAPPQQRGP	11	Unmodified	_EPQAPPQQRGP_					0	0	0			REV__ENST00000550853.1_2_9:136891668-136894151:+|nuORF	REV__ENST00000550853.1_2_9:136891668-136894151:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	602.80712890625	2	602.807094	1203.59963	0.53162	0.00032046	0.3518	0.00021207	0.88342	0.00053253	602.8071361994954	21.556	0.42245	21.575	21.377	21.799	0.018446					16	7	3	0	0	0	0.69464	1	7515	7515		23.79	3.2088	1	3253200	+		9754	16423	5519	5557	9439	9439					0.005978432438496384
EPQAPPQQRGP	11	Unmodified	_EPQAPPQQRGP_					0	0	0			REV__ENST00000550853.1_2_9:136891668-136894151:+|nuORF	REV__ENST00000550853.1_2_9:136891668-136894151:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	602.8071899414062	2	602.807094	1203.59963	1.2372	0.00074577	-0.93186	-0.00056173	0.3053	0.00018404	602.8064983708867	21.759	0.46733	21.541	21.374	21.841	-0.21832					13	8	2	0	0	0	0.7093	1	7565	7565		18.373	5.5005	1	3759600	+		9755	16423	5519	5557	9440	9440					0.005978432438496384
EPQATPSVS	9	Unmodified	_EPQATPSVS_					0	0	0			REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF	REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	458.22430419921875	2	458.224539	914.434526	0.4906	0.0002248	-0.41831	-0.00019168	0.072285	3.3123E-05	458.22443819883904	30.031	0.47533	29.795	29.555	30.03	-0.23655					14	8	2	0	0	0	0.19461	1	10936	10936		41.84	3.8656	1	7960400	+		9756	14136	5520	5558	9441	9441					-0.0261138861579866
EPQATPSVS	9	Unmodified	_EPQATPSVS_					0	0	0			REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF	REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	458.224539	914.434526	0.4906	0.0002248	-0.41831	-0.00019168	0.072285	3.3123E-05	458.22443819883904	30.031	0.47533	29.795	29.555	30.03	-0.23655	0.01407	-0.00021872	NaN	41.84	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7960400	+		9757	14136	5520	5558							-0.0261138861579866
EPQATPSVS	9	Unmodified	_EPQATPSVS_					0	0	0			REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF	REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	458.224539	914.434526	0.12847	5.887E-05	0.18936	8.6769E-05	0.31783	0.00014564	458.2244471842362	30.124	0.26004	29.767	29.649	29.909	-0.35711	-0.01407	0.00033818	NaN	41.84	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3186500	+		9758	14136	5520	5558							-0.0261138861579866
EPQPSQLCAAD	11	Unmodified	_EPQPSQLCAAD_					0	0	0			REV__nc|ENSG00000173809|Q587J7|TDRD12	REV__nc|ENSG00000173809|Q587J7|TDRD12	MSMS	HCT116MG_D190212_S3	3	579.5699462890625	2	579.75842	1157.50229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.629	1	14.709	14.209	15.209	0.079683								0	0	0	0.94755	1	4724	4724		7.609	0.31972	1		+		9759	13454	5521	5559	9442	9442					-0.07016306747300405
EPQTRSPEFT	10	Unmodified	_EPQTRSPEFT_					0	0	0		ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;ATP1A2|p.S220L|1|0.61|ENSG00000018625|chr1:160125164-160125164|C/T|missense_variant	ENST00000472488.5_1_1:160085570-160106822:+|nuORF	ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	597.2858276367188	2	596.28566	1190.55677	1.0687	0.00063726	-2.5361	-0.0015122	-1.4674	-0.00087497	596.2848721199613	27.055	0.67523	26.744	26.431	27.106	-0.3114					23	12	3	0	0	0	0.80632	1	9634	9634		11.495	0.6952	1	2398300			9760	935	5522	5560	9443	9443					-0.03088971604256585
EPRKEPRTAE	10	Unmodified	_EPRKEPRTAE_					0	0	0		ENST00000464413.1_1_2:99426225-99438629:-|nuORF;ENSG00000196872|ENST00000397899|CRACDL	ENST00000464413.1_1_2:99426225-99438629:-|nuORF	ENST00000464413.1_1_2:99426225-99438629:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	404.54827880859375	3	404.882559	1211.62585	0.1111	4.4984E-05	0.69555	0.00028162	0.80665	0.0003266	404.8828630778829	26.629	0.36422	26.479	26.307	26.671	-0.14924					10	6	2	0	0	0	0.31006	1	9569	9569		9.2438	6.6125	1	8616000			9761	6103	5523	5561	9444	9444					0.028501124153535784
EPRNKHAMNP	10	Unmodified	_EPRNKHAMNP_					0	0	0		NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant;ENSG00000114857|ENST00000232978|NKTR;NKTR|p.R859Kfs*9|1|0.28|ENSG00000114857|chr3:42638271-42638272|-/A|frameshift_variant;NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant;NKTR|p.K429Nfs*37|1|0.2|ENSG00000114857|chr3:42636986-42636986|A/-|frameshift_variant;ENST00000472127.1_1_3:42672642-42674322:+|nuORF;NKTR|p.S245_E246insLS|1|0.06|ENSG00000114857|chr3:42632785-42632786|-/CTTTCT|inframe_insertion	NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant	NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	596.7973022460938	2	597.295839	1192.57712	0.73347	0.0004381	2.512	0.0015004	3.2455	0.0019385	597.2975002932844	29.329	0.26098	29.329	29.112	29.373	0					8	4	3	0	0	0	0.28496	1	10712	10712		13.906	1.6654	1	5354500			9762	9696	5524	5562	9445	9445					-0.011460794254162465
EPRPDILDMP	10	Unmodified	_EPRPDILDMP_					0	0	0		nc|ENSG00000213199|Q9UHC3-2|ASIC3	nc|ENSG00000213199|Q9UHC3-2|ASIC3	nc|ENSG00000213199|Q9UHC3-2|ASIC3	MSMS	HCT116MG_D190212_S1	1	394.8669128417969	3	394.865629	1181.57506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.946	1	14.946	14.446	15.446	0								0	0	0	0.94107	1	4930	4930		3.5871	0.26742	1				9763	9631	5525	5563	9446	9446					-0.008465529539080308
EPRRAAAAP	9	Unmodified	_EPRRAAAAP_					0	0	0			REV__ENSG00000148411|ENST00000277554|NACC2	REV__ENSG00000148411|ENST00000277554|NACC2	MULTI-MSMS	HCT116MG_D190212_S1	1	469.7624206542969	2	469.761958	937.509363	0.34535	0.00016223	-0.11055	-5.193E-05	0.2348	0.0001103	469.76185971641036	16.935	0.31288	16.935	16.733	17.046	0					8	5	2	0	0	0	0.19218	1	5757	5757		42.095	7.6928	1	1750500	+		9764	12544	5526	5564	9447	9447					0.03810838706067443
EPRRRRRQRRQ	11	Unmodified	_EPRRRRRQRRQ_					0	0	0			REV__ENST00000225296.7_1_17:5371988-5372192:-|nuORF	REV__ENST00000225296.7_1_17:5371988-5372192:-|nuORF	MSMS	HCT116MG_D190212_S1	1	531.8349609375	3	531.984228	1592.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.721	1	55.721	55.221	56.221	0								0	0	0	0.96192	1	21404	21404		0.08335	0.08335	1		+		9765	14532	5527	5565	9448	9448					0.15810566122718228
EPSRDLSSA	9	Unmodified	_EPSRDLSSA_					0	0	0			REV__ENST00000311852.10_1_14:23315382-23315463:+|nuORF	REV__ENST00000311852.10_1_14:23315382-23315463:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	481.9105224609375	2	481.232896	960.451239	0.064039	3.0818E-05	-0.29604	-0.00014247	-0.232	-0.00011165	481.23274864918193	19.001	0.31277	19.001	18.819	19.131	0					11	5	3	0	0	0	0.51301	1	6533	6533		16.149	5.3252	1	9450800	+		9766	14838	5528	5566	9449	9449					-0.030568877298605912
EPSRTLDGP	9	Unmodified	_EPSRTLDGP_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	HCT116MG_D190212_S1	1	487.364013671875	2	486.243264	970.471974	0.33727	0.000164	0.0077308	3.7591E-06	0.345	0.00016776	486.2431557907752	14.832	0.26016	14.832	14.702	14.962	0					9	4	3	0	0	0	0.70732	1	4858	4858		4.756	0.42677	1	9888000	+		9767	10801	5529	5567	9450	9450					-0.014442973501786582
EPSTSSVPSP	10	Unmodified	_EPSTSSVPSP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	HCT116MG_D190212_S4	4	987.4631958007812	1	987.462932	986.455655	0.5712	0.00056403	0.079063	7.8072E-05	0.65026	0.00064211	987.4627047440491	29.495	0.51991	29.146	28.929	29.449	-0.34921					14	9	2	0	0	0	0.1448	1	10672	10672		65.235	2.6623	1	2136700	+		9768	13681	5530	5568	9451	9451					-0.038114233069450165
EPTKCFSF	8	Unmodified	_EPTKCFSF_					0	0	0			REV__ENST00000469446.5_1_10:86004840-86007552:+|nuORF	REV__ENST00000469446.5_1_10:86004840-86007552:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	958.4346313476562	1	958.43388	957.426604	0.71654	0.00068676	-0.075403	-7.2269E-05	0.64114	0.00061449	958.4337123474152	57.23	0.25949	57.23	57.1	57.36	0					7	4	2	0	0	0	0.81821	1	22042	22042		9.3474	9.3474	1	42278000	+		9769	12549	5531	5569	9452	9452					-0.053812391369206125
EPTVPQETSTS	11	Unmodified	_EPTVPQETSTS_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MULTI-SECPEP	HCT116MG_D190212_S2	2	392.1838073730469	3	392.519064	1174.53536	-0.017249	-6.7707E-06	-0.51819	-0.0002034	-0.53544	-0.00021017	392.51897498625357	25.582	0.31251	25.213	25.03	25.343	-0.36914					12	5	3	0	0	0	0.35378	1	9229	9229		10.527	0	1	21277000	+		9770	12172	5532	5570	9453	9453					-0.04492401423590309
EPVGHADTGL	10	Unmodified	_EPVGHADTGL_					0	0	0		nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;PARD3|p.S1335Lfs*15|1|0.17|ENSG00000148498|chr10:34111237-34111238|-/G|frameshift_variant;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3;nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-5|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;PARD3|p.I456*|1|0.04|ENSG00000148498|chr10:34382573-34382573|T/-|frameshift_variant	nc|ENSG00000148498|Q8TEW0-3|PARD3	nc|ENSG00000148498|Q8TEW0-3|PARD3	MULTI-SECPEP	HCT116MG_D190212_S2	2	498.77166748046875	2	498.243264	994.471974	0.2776	0.00013831	0.51023	0.00025422	0.78783	0.00039253	498.24323839062777	15.789	0.57453	15.454	15.324	15.898	-0.33451					17	10	2	0	0	0	0.26351	1	5263	5263		22.736	0	1	5417700			9771	4027	5533	5571	9454	9454					-0.025482973501880224
EPVRGRLILM	10	Unmodified	_EPVRGRLILM_					0	0	0			REV__ENST00000527295.5_1_11:405898-406649:-|nuORF	REV__ENST00000527295.5_1_11:405898-406649:-|nuORF	MSMS	HCT116MG_D190212_S1	1	592.3535766601562	2	592.352625	1182.6907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.8	1	42.8	42.3	43.3	0								0	0	0	0.96377	1	16153	16153		1.6526	0	1		+		9772	13831	5534	5572	9455	9455					0.10666015687638719
EPYDIFDP	8	Unmodified	_EPYDIFDP_					0	0	0			REV__nc|ENSG00000080561|Q9UJV3-2|MID2	REV__nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-SECPEP	HCT116MG_D190212_S1	1	497.4564514160156	2	498.221465	994.428378	0.24609	0.00012261	0.68803	0.00034279	0.93412	0.0004654	498.22168289472893	19.574	0.36466	19.574	19.287	19.652	0					9	6	2	0	0	0	0.29766	1	6727	6727		5.2307	0	1	2870700	+		9773	10864	5535	5573	9456	9456					-0.06905906847316601
EPYLRPRG	8	Unmodified	_EPYLRPRG_					0	0	0		ENST00000463846.5_1_1:44461423-44461829:+|nuORF;ENST00000486064.5_1_1:44460678-44461829:+|nuORF;nc|ENSG00000159214|Q8N4L8-2|CCDC24;ENSG00000159214|ENST00000372318|CCDC24	ENST00000463846.5_1_1:44461423-44461829:+|nuORF	ENST00000463846.5_1_1:44461423-44461829:+|nuORF	MSMS	HCT116MG_D190212_S3	3	494.27276611328125	2	494.272158	986.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.785	1	51.475	50.975	51.975	-0.30927								0	0	0	0.8837	1	19560	19560		8.5933	3.3626	1				9774	4406	5536	5574	9457	9457					0.03596009365901409
EQAIGRGEQP	10	Unmodified	_EQAIGRGEQP_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-9|USP54	REV__nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-MSMS	HCT116MG_D190212_S3	3	542.7730712890625	2	542.772719	1083.53089	0.41584	0.00022571	0.47418	0.00025737	0.89003	0.00048308	542.7727261730245	23.245	0.97768	23.205	22.73	23.708	-0.03968					43	18	4	0	0	0	0.55624	1	8124	8124		31.268	0.6318	1	16209000	+		9775	13100	5537	5575	9458	9458					-0.007538210558550418
EQAKEEPGH	9	Unmodified	_EQAKEEPGH_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7385864257812	2	512.738345	1023.46214	0.23929	0.00012269	-0.11281	-5.7842E-05	0.12648	6.4849E-05	512.7382596536693	16.696	0.9382	16.355	15.682	16.62	-0.34183					22	17	2	0	0	0	0.34272	1	5660	5660		26.268	1.2772	1	3748800			9776	6053	5538	5576	9459	9459					-0.048654853555717636
EQAKEEPGH	9	Unmodified	_EQAKEEPGH_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	512.738345	1023.46214	0.23929	0.00012269	-0.11281	-5.7842E-05	0.12648	6.4849E-05	512.7382596536693	16.696	0.9382	16.355	15.682	16.62	-0.34183	-0.0062793	9.4748E-05	NaN	26.268	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3748800			9777	6053	5538	5576							-0.048654853555717636
EQAKLAVRS	9	Unmodified	_EQAKLAVRS_					0	0	0			REV__ENSG00000158863|ENST00000289921|FHIP2B	REV__ENSG00000158863|ENST00000289921|FHIP2B	MULTI-MSMS	HCT116MG_D190212_S4	4	501.28997802734375	2	501.290548	1000.56654	0.49076	0.00024602	-0.0017135	-8.5898E-07	0.48905	0.00024516	501.2904648259729	47.011	1.9761	46.641	45.956	47.932	-0.37038					96	53	4	0	0	0	0.11023	1	17867	17867		56.177	12.319	1	13843000	+		9778	12792	5539	5577	9460	9460					0.06628261191804086
EQALPQES	8	Unmodified	_EQALPQES_					0	0	0			REV__ENSG00000159166|ENST00000391967|LAD1	REV__ENSG00000159166|ENST00000391967|LAD1	MSMS	HCT116MG_D190212_S3	3	451.21783447265625	2	451.216714	900.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.731	1	35.432	34.932	35.932	-0.29922								0	0	0	0.81076	1	13179	13179		21.747	1.293	1		+		9779	12796	5540	5578	9461	9461					-0.035316751328537066
EQAQFQYY	8	Unmodified	_EQAQFQYY_					0	0	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	538.7384033203125	2	538.737814	1075.46108	0.26332	0.00014186	1.7428	0.0009389	2.0061	0.0010808	538.7386412070038	23.044	0.31481	22.807	22.706	23.021	-0.23758					8	5	2	0	0	0	0.60268	1	8062	8062		32.117	6.7177	1	4137200	+		9780	10396	5541	5579	9462	9462					-0.0736369972448756
EQAQQLQELNY	11	Unmodified	_EQAQQLQELNY_					0	0	0		nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-SECPEP	HCT116MG_D190212_S2	2	682.342041015625	2	682.328056	1362.64156	0.42733	0.00029158	-1.0059	-0.00068632	-0.57853	-0.00039474	682.8298555896199	32.173	0.25987	31.943	31.787	32.046	-0.23009					12	4	4	0	0	0	0.35748	1	11931	11931		12.241	0.74595	1	18972000			9781	4743	5542	5580	9463	9463					-0.025256458582816776
EQAQWLDEV	9	Unmodified	_EQAQWLDEV_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	HCT116MG_D190212_S1	1	558.7479858398438	2	559.261653	1116.50875	0.46185	0.00025829	-1.0993	-0.00061478	-0.63743	-0.00035649	559.2611154078453	34.389	0.26047	34.389	34.233	34.493	0					7	4	2	0	0	0	0.17558	1	12776	12776		34.402	6.7729	1	2577000			9782	908	5543	5581	9464	9464					-0.0448404552428201
EQDQCAPAY	9	Unmodified	_EQDQCAPAY_					0	0	0			REV__nc|ENSG00000171462|Q6UY11-2|DLK2	REV__nc|ENSG00000171462|Q6UY11-2|DLK2	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7059326171875	2	512.705657	1023.39676	-0.055274	-2.8339E-05	0.2558	0.00013115	0.20053	0.00010281	512.7057284347256	36.42	0.26002	36.119	35.989	36.249	-0.30113					6	4	2	0	0	0	0.60612	1	13493	13493		10.824	0.75	1	5348500	+		9783	13346	5544	5582	9465	9465					-0.11400222872941868
EQEASPAM	8	Unmodified	_EQEASPAM_					0	0	0		SETD1A|p.R1117M|1|0.2|ENSG00000099381|chr16:30971711-30971711|G/T|missense_variant	SETD1A|p.R1117M|1|0.2|ENSG00000099381|chr16:30971711-30971711|G/T|missense_variant	SETD1A|p.R1117M|1|0.2|ENSG00000099381|chr16:30971711-30971711|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	862.3617553710938	1	862.361109	861.353833	0.80964	0.00069821	0.97147	0.00083776	1.7811	0.001536	862.3619131757563	43.664	0.31268	43.357	43.136	43.448	-0.30615					7	5	2	0	0	0	0.6854	1	16314	16314		24.674	5.2349	1	5284900			9784	18148	5545	5583	9466	9466					-0.08238992930353106
EQEERERRYRE	11	Unmodified	_EQEERERRYRE_					0	0	0		ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1;ENST00000471767.1_1_5:176893910-176894598:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MSMS	HCT116MG_D190212_S1	1	790.3820190429688	2	790.382217	1578.74988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.649	1	35.649	35.149	36.149	0								0	0	0	0.95473	1	13268	13268		7.609	6.4156	1				9785	2404	5546	5584	9467	9467					-0.01634461555136113
EQEFTQLC	8	Unmodified	_EQEFTQLC_					0	0	0		ENST00000470335.1_1_22:20837987-20843498:-|nuORF;ENST00000494929.5_1_22:20819888-20843498:-|nuORF;ENSG00000099910|ENST00000328879|KLHL22	ENST00000470335.1_1_22:20837987-20843498:-|nuORF	ENST00000470335.1_1_22:20837987-20843498:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	997.4296875	1	997.429523	996.422247	0.46382	0.00046263	-0.37967	-0.0003787	0.084148	8.3932E-05	997.4293488940646	30.735	0.29875	30.474	30.358	30.656	-0.26071					7	5	2	0	0	0	0.55794	1	11239	11239		36.044	0	1	4304300			9786	8146	5547	5585	9468	9468					-0.07610748350498397
EQELFEPNQSP	11	Unmodified	_EQELFEPNQSP_					0	0	0		nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1	nc|ENSG00000168781|Q6PFW1-7|PPIP5K1	nc|ENSG00000168781|Q6PFW1-7|PPIP5K1	MULTI-MSMS	HCT116MG_D190212_S1	1	659.3018188476562	2	659.301507	1316.58846	0.85234	0.00056195	-1.125	-0.00074172	-0.27266	-0.00017977	659.30123903647	17.861	0.20853	17.861	17.724	17.933	0					8	3	3	0	0	0	0.74191	1	6132	6132		4.897	0	1	4169000			9787	5030	5548	5586	9469	9469					-0.057170236409547215
EQERDRKLQP	10	Unmodified	_EQERDRKLQP_					0	0	0		nc|ENSG00000070759|Q96S53-3|TESK2;nc|ENSG00000070759|Q96S53-2|TESK2;ENSG00000070759|ENST00000372086|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	MSMS	HCT116MG_D190212_S1	1	650.0101318359375	2	649.844207	1297.67386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.668	1	31.668	31.168	32.168	0								0	0	0	0.90892	1	11660	11660		13.906	0.86358	1				9788	1242	5549	5587	9470	9470					0.0369318633538569
EQETQLTYR	9	Unmodified	_EQETQLTYR_					0	0	0		EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant;ENST00000553281.5_1_14:89088194-89171927:-|nuORF;nc|ENSG00000165521|Q05BV3-2|EML5;EML5|p.G1621Efs*19|1|0.2|ENSG00000165521|chr14:88624982-88624982|C/-|frameshift_variant;EML5|p.N1682Mfs*7|1|0.04|ENSG00000165521|chr14:88621246-88621246|T/-|frameshift_variant;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5	EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant	EML5|p.D1019Efs*4|1|0.07|ENSG00000165521|chr14:88681957-88681958|-/AATATGT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	584.2872924804688	2	584.28566	1166.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.729	1	18.366	17.866	18.866	-0.36325								0	0	0	0.42657	1	6454	6454		32.305	3.8186	1				9789	778	5550	5588	9471	9471					-0.01984971604247221
EQFDQVEY	8	Unmodified	_EQFDQVEY_					0	0	0			REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1057.447998046875	1	1057.44728	1056.44001	0.7625	0.00080631	0.65703	0.00069478	1.4195	0.0015011	1057.4478313054772	40.821	0.25896	40.751	40.622	40.881	-0.069626					7	4	2	0	0	0	0.14283	1	15438	15438		85.272	24.882	1	25863000	+		9790	9908	5551	5589	9472	9472					-0.08595709823998732
EQFDQVEY	8	Unmodified	_EQFDQVEY_					0	0	0			REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1057.447998046875	1	1057.44728	1056.44001	0.76627	0.00081029	0.60168	0.00063625	1.3679	0.0014465	1057.4480232849846	41.034	0.26037	40.732	40.58	40.84	-0.30185					10	4	3	0	0	0	0.19352	1	15270	15270		74.929	14.539	1	6077700	+		9791	9908	5551	5589	9473	9473					-0.08595709823998732
EQFDQVEY	8	Unmodified	_EQFDQVEY_					0	0	0			REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1057.44728	1056.44001	0.7625	0.00080631	0.65703	0.00069478	1.4195	0.0015011	1057.4478313054772	40.821	0.25896	40.751	40.622	40.881	-0.069626	0.0096067	2.6343E-05	NaN	85.272	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25863000	+		9792	9908	5551	5589							-0.08595709823998732
EQFDQVEY	8	Unmodified	_EQFDQVEY_					0	0	0			REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1057.44728	1056.44001	0.76627	0.00081029	0.60168	0.00063625	1.3679	0.0014465	1057.4480232849846	41.034	0.26037	40.732	40.58	40.84	-0.30185	-0.0096067	-3.2188E-05	NaN	85.272	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6077700	+		9793	9908	5551	5589							-0.08595709823998732
EQFISDICP	9	Unmodified	_EQFISDICP_					0	0	0		ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	MULTI-MSMS	HCT116MG_D190212_S2	2	1051.4759521484375	1	1051.47647	1050.4692	0.75254	0.00079128	-0.55003	-0.00057835	0.2025	0.00021293	1051.47570672658	56.803	0.26462	56.624	56.475	56.739	-0.17904					6	4	2	0	0	0	0.13706	1	21949	21949		50.855	2.5092	1	6092000			9794	876	5552	5590	9474	9474					-0.05401888799360677
EQHEFWQS	8	Unmodified	_EQHEFWQS_					0	0	0			REV__ENSG00000213927|ENST00000259631|CCL27	REV__ENSG00000213927|ENST00000259631|CCL27	MULTI-SECPEP	HCT116MG_D190212_S2	2	545.274658203125	2	545.733063	1089.45157	0.41926	0.0002288	0.47693	0.00026027	0.89619	0.00048908	545.7331382628138	23.327	0.6228	22.941	22.726	23.349	-0.38521					15	11	2	0	0	0	0.30703	1	8372	8372		7.9102	1.187	1	45201000	+		9795	14260	5553	5591	9475	9475					-0.08957468009998593
EQHRTAALSL	10	Unmodified	_EQHRTAALSL_					0	0	0			REV__ENST00000498106.1_1_7:30088860-30089055:+|nuORF	REV__ENST00000498106.1_1_7:30088860-30089055:+|nuORF	MSMS	HCT116MG_D190212_S2	2	563.3038330078125	2	563.304187	1124.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.142	1	25.78	25.28	26.28	-0.36164								0	0	0	0.92917	1	9445	9445		9.3831	1.2276	1		+		9796	16105	5554	5592	9476	9476					0.03650744732203748
EQIFLVYSL	9	Unmodified	_EQIFLVYSL_					0	0	0			REV__GPAM|p.R108H|1|0.22|ENSG00000119927|chr10:112175690-112175690|C/T|missense_variant	REV__GPAM|p.R108H|1|0.22|ENSG00000119927|chr10:112175690-112175690|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	371.2062683105469	3	371.20598	1110.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.502	1	59.342	58.842	59.842	-0.16012								0	0	0	0.76995	1	23009	23009		1.0715	0	1		+		9797	11677	5555	5593	9477	9477					0.0452378041729844
EQKIVVGAGP	10	Unmodified	_EQKIVVGAGP_					0	0	0			REV__nc|ENSG00000175832|P43268-2|ETV4	REV__nc|ENSG00000175832|P43268-2|ETV4	MSMS	HCT116MG_D190212_S3	3	499.2866516113281	2	499.287474	996.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.558	1	26.409	25.909	26.909	-0.14924								0	0	0	0.77279	1	9533	9533		32.305	10.559	1		+		9798	13530	5556	5594	9478	9478					0.06197742960284813
EQKKRKLIL	9	Unmodified	_EQKKRKLIL_					0	0	0		ENST00000472669.5_1_6:108365991-108372269:-|nuORF;ENSG00000081087|ENST00000193322|OSTM1	ENST00000472669.5_1_6:108365991-108372269:-|nuORF	ENST00000472669.5_1_6:108365991-108372269:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	578.4177856445312	2	578.38224	1154.74993	0.48284	0.00027927	0.099754	5.7696E-05	0.58259	0.00033696	578.3821675309341	59.739	1.2307	59.579	59.285	60.516	-0.16012					44	24	3	0	0	0	0.26961	1	23441	23441		0.45834	0	1	29777000			9799	1409	5557	5595	9479	9479					0.17874234973487546
EQKLDKSLP	9	Unmodified	_EQKLDKSLP_					0	0	0			REV__nc|ENSG00000185792|Q7RTR0-2|NLRP9	REV__nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2982788085938	2	529.298039	1056.58152	0.18541	9.8139E-05	-0.054002	-2.8583E-05	0.13141	6.9556E-05	529.2979246745168	30.44	1.3923	30.156	29.667	31.059	-0.28453					30	26	2	0	0	0	0.1754	1	11224	11224		43.858	0.085901	1	21155000	+		9800	13857	5558	5596	9480	9480					0.0554970826913177
EQKQPIQT	8	Unmodified	_EQKQPIQT_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-MSMS	HCT116MG_D190212_S2	2	486.261474609375	2	486.261456	970.50836	0.3425	0.00016654	0.20185	9.8151E-05	0.54435	0.0002647	486.26154448112516	22.41	0.36258	22.025	21.843	22.206	-0.3852					11	6	2	0	0	0	0.19352	1	7946	7946		74.929	9.694	1	20240000	+		9801	14308	5559	5597	9481	9481					0.021925795465108422
EQKQPIQT	8	Unmodified	_EQKQPIQT_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-MSMS	HCT116MG_D190212_S3	3	486.26171875	2	486.261456	970.50836	0.1613	7.8435E-05	0.59728	0.00029044	0.75858	0.00036887	486.26177062936034	21.854	0.31324	21.854	21.677	21.99	0.00074387					11	5	3	0	0	0	0.20876	1	7629	7629		71.922	13.243	1	6829400	+		9802	14308	5559	5597	9482	9482					0.021925795465108422
EQKQPIQT	8	Unmodified	_EQKQPIQT_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-SECPEP	HCT116MG_D190212_S3	3	486.77191162109375	2	486.261456	970.50836	0.1613	7.8435E-05	0.59728	0.00029044	0.75858	0.00036887	486.26177062936034	21.854	0.31324	21.854	21.677	21.99	0.00074387					11	5	3	0	0	0	0.13347	1	7642	7642		71.922	13.243	1	6829400	+		9803	14308	5559	5597	9483	9483					0.021925795465108422
EQKQPIQT	8	Unmodified	_EQKQPIQT_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	486.261456	970.50836	0.3425	0.00016654	0.20185	9.8151E-05	0.54435	0.0002647	486.26154448112516	22.41	0.36258	22.025	21.843	22.206	-0.3852	0.10115	-0.00018566	NaN	74.929	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20240000	+		9804	14308	5559	5597							0.021925795465108422
EQKQPIQT	8	Unmodified	_EQKQPIQT_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	486.261456	970.50836	-0.029038	-1.412E-05	0.23497	0.00011426	0.20593	0.00010014	486.2616995722528	22.119	0.25965	21.892	21.78	22.039	-0.22777	-0.031876	-0.00015345	NaN	74.929	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1603600	+		9805	14308	5559	5597							0.021925795465108422
EQKSWEHQSAS	11	Unmodified	_EQKSWEHQSAS_					0	0	0		nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;ENSG00000100503|ENST00000530997|NIN;nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	nc|ENSG00000100503|Q8N4C6-6|NIN	MSMS	HCT116MG_D190212_S3	3	658.7948608398438	2	658.796923	1315.57929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.424	1	16.509	16.009	17.009	0.085424								0	0	0	0.95772	1	5449	5449		2.2828	0.63015	1				9806	1714	5560	5598	9484	9484					-0.06587372206604414
EQLASFLAP	9	Unmodified	_EQLASFLAP_					0	0	0			REV__nc|ENSG00000188566|Q9UHB4-2|NDOR1	REV__nc|ENSG00000188566|Q9UHB4-2|NDOR1	MULTI-MSMS	HCT116MG_D190212_S3	3	975.515380859375	1	975.514573	974.507297	0.69082	0.0006739	0.20543	0.0002004	0.89624	0.0008743	975.5146047320919	56.25	0.15679	55.966	55.888	56.045	-0.28367					4	2	2	0	0	0	0.084109	1	21379	21379		61.357	0	1	1318800	+		9807	17255	5561	5599	9485	9485					0.019023651776251427
EQLEIWHRN	9	Unmodified	_EQLEIWHRN_					0	0	0		APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	612.8087158203125	2	612.809636	1223.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.405	1	41.103	40.603	41.603	-0.30185								0	0	0	0.76978	1	15402	15402		1.6526	0.17072	1				9808	159	5562	5600	9486	9486					0.001861471064557918
EQLEIWHRN	9	Unmodified	_EQLEIWHRN_					0	0	0		APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	APLP2|p.R400W|1|0.09|ENSG00000084234|chr11:130126807-130126807|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	612.8079223632812	2	612.809636	1223.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.324	1	40.946	40.446	41.446	-0.37732								0	0	0	0.76978	1	15192	15192		1.6526	0.17072	1				9809	159	5562	5600	9487	9487					0.001861471064557918
EQLFDLDPKQA	11	Unmodified	_EQLFDLDPKQA_					0	0	0			REV__ENSG00000146054|ENST00000274773|TRIM7	REV__ENSG00000146054|ENST00000274773|TRIM7	MSMS	HCT116MG_D190212_S4	4	652.3308715820312	2	652.330067	1302.64558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.447	1	25.167	24.667	25.667	-0.27958								0	0	0	0.94755	1	9018	9018		7.609	0	1		+		9810	12470	5563	5601	9488	9488					0.006364436354260761
EQLFSSARL	9	Unmodified	_EQLFSSARL_					0	0	0		CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant;CDCA7L|p.L231Yfs*24|1|0.06|ENSG00000164649|chr7:21906629-21906630|-/CTGATAT|frameshift_variant;nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;CDCA7L|p.C406Vfs*46|1|0.5|ENSG00000164649|chr7:21903097-21903097|G/-|frameshift_variant;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant	CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	525.7826538085938	2	525.782556	1049.55056	0.31217	0.00016413	0.54701	0.00028761	0.85918	0.00045174	525.782735396162	32.578	0.31261	32.353	32.156	32.468	-0.22466					9	5	2	0	0	0	0.1535	1	12071	12071		52.268	6.2474	1	10849000			9811	380	5564	5602	9489	9489					0.027765549549030766
EQLFSSARL	9	Unmodified	_EQLFSSARL_					0	0	0		CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant;CDCA7L|p.L231Yfs*24|1|0.06|ENSG00000164649|chr7:21906629-21906630|-/CTGATAT|frameshift_variant;nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;CDCA7L|p.C406Vfs*46|1|0.5|ENSG00000164649|chr7:21903097-21903097|G/-|frameshift_variant;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant	CDCA7L|p.T178Qfs*12|1|0.34|ENSG00000164649|chr7:21908279-21908279|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	525.782556	1049.55056	0.53402	0.00028078	1.6146	0.00084895	2.1487	0.0011297	526.2852635728029	32.663	0.36452	32.378	32.144	32.508	-0.28511	0.012285	0.00093359	NaN	52.268	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2251400			9812	380	5564	5602							0.027765549549030766
EQLGSAEAAGP	11	Unmodified	_EQLGSAEAAGP_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MSMS	HCT116MG_D190212_S4	4	515.2457885742188	2	515.246003	1028.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.737	1	19.543	19.043	20.043	-0.19367								0	0	0	0.88801	1	6713	6713		21.537	4.4241	1				9813	4287	5565	5603	9490	9490					-0.03564618558402799
EQLLKFPFI	9	Unmodified	_EQLLKFPFI_					0	0	0		nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.E1253Rfs*14|1|0.42|ENSG00000141503|chr17:4896565-4896565|G/-|frameshift_variant;MINK1|p.F1308Lfs*15|1|0.19|ENSG00000141503|chr17:4897207-4897207|T/-|frameshift_variant;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;MINK1|p.D1112Gfs*17|1|0.14|ENSG00000141503|chr17:4895797-4895798|-/G|frameshift_variant;MINK1|p.I705Sfs*101|1|0.26|ENSG00000141503|chr17:4892425-4892425|A/-|frameshift_variant;ENST00000572330.5_1_17:4736842-4793277:+|nuORF	nc|ENSG00000141503|Q8N4C8-2|MINK1	nc|ENSG00000141503|Q8N4C8-2|MINK1	MULTI-SECPEP	HCT116MG_D190212_S1	1	568.284912109375	2	567.831517	1133.64848	0.20743	0.00011779	-0.22651	-0.00012862	-0.019079	-1.0834E-05	567.8313924161309	47.918	0.50566	47.918	47.646	48.152	0					10	9	2	0	0	0	0.26328	1	18161	18161		4.3292	0	1	16886000			9814	3723	5566	5604	9491	9491					0.08700363550906332
EQLMYVIY	8	Oxidation (M)	_EQLM(Oxidation (M))YVIY_		EQLM(1)YVIY		EQLM(48)YVIY	0	0	1			REV__ENST00000530238.5_1_11:66105966-66109705:-|nuORF	REV__ENST00000530238.5_1_11:66105966-66109705:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7626953125	2	537.762443	1073.51033	0.32217	0.00017325	-1.5913	-0.00085576	-1.2692	-0.0006825	537.7616375544695	39.697	0.30847	39.619	39.477	39.785	-0.077835					9	5	2	0	0	0	0.41924	1	14978	14978		48.346	18.121	1	19104000	+		9815	16306	5567	5605	9492	9492		163			-0.02348127759887575
EQLNDTWLYSY	11	Unmodified	_EQLNDTWLYSY_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MSMS	HCT116MG_D190212_S3	3	716.3248901367188	2	716.324982	1430.63541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.377	1	29.155	28.655	29.655	-0.22195								0	0	0	0.94416	1	10670	10670		9.3831	0	1		+		9816	13934	5568	5606	9493	9493					-0.06268164089783568
EQLQALEAL	9	Unmodified	_EQLQALEAL_					0	0	0		ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	MULTI-MSMS	HCT116MG_D190212_S3	3	507.7771301269531	2	507.776939	1013.53933	0.51115	0.00025955	0.25035	0.00012712	0.7615	0.00038667	507.7769508811012	46.337	0.38107	46.025	45.902	46.283	-0.31237					11	8	2	0	0	0	0.027442	1	17383	17383		88.954	3.3123	1	8804900			9817	1133	5569	5607	9494	9494					0.033097328607595955
EQLQALEAL	9	Unmodified	_EQLQALEAL_					0	0	0		ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	507.776939	1013.53933	0.37135	0.00018856	0.44361	0.00022526	0.81496	0.00041382	507.7765300403173	46.085	0.36004	45.984	45.812	46.172	-0.1014	-0.0090641	0.00020993	NaN	88.954	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7469200			9818	1133	5569	5607							0.033097328607595955
EQLQHRPGP	9	Unmodified	_EQLQHRPGP_					0	0	0		ENST00000566264.1_1_16:1583702-1584173:+|nuORF	ENST00000566264.1_1_16:1583702-1584173:+|nuORF	ENST00000566264.1_1_16:1583702-1584173:+|nuORF	MSMS	HCT116MG_D190212_S4	4	531.2779541015625	2	531.277972	1060.54139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.473	1	30.109	29.609	30.609	-0.36416								0	0	0	0.71969	1	11037	11037		18.135	1.0221	1				9819	8863	5570	5608	9495	9495					0.013542063892145961
EQLQLQSLVWR	11	Unmodified	_EQLQLQSLVWR_					0	0	0			REV__nc|ENSG00000231475|A0A087WSY4|IGHV4-30-2	REV__nc|ENSG00000231475|A0A087WSY4|IGHV4-30-2	MSMS	HCT116MG_D190212_S1	1	700.6369018554688	2	700.388251	1398.76195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.673	1	41.673	41.173	42.173	0								0	0	0	0.95017	1	15698	15698		4.5289	0	1		+		9820	17287	5571	5609	9496	9496					0.07851806925964411
EQLQNYRAQ	9	Unmodified	_EQLQNYRAQ_					0	0	0			REV__TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant	REV__TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	575.787841796875	2	575.285994	1148.55744	0.42743	0.00024589	-1.0275	-0.00059108	-0.60003	-0.00034519	575.2852041284561	23.713	0.57325	23.655	23.482	24.055	-0.057926					16	10	3	0	0	0	0.45867	1	8379	8379		19.257	3.4098	1	4593000	+		9821	13073	5572	5610	9497	9497					-0.010901321645405915
EQLQNYRAQ	9	Unmodified	_EQLQNYRAQ_					0	0	0			REV__TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant	REV__TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	575.285994	1148.55744	0.46976	0.00027025	-0.40126	-0.00023084	0.068503	3.9409E-05	575.2855610716766	23.889	0.41598	23.631	23.365	23.781	-0.25816	-0.012225	0.00025405	NaN	19.257	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3429200	+		9822	13073	5572	5610							-0.010901321645405915
EQLRLQEL	8	Unmodified	_EQLRLQEL_					0	0	0		nc|ENSG00000135083|Q8IV13-2|CCNJL;ENST00000377503.6_1_5:159686777-159766528:-|nuORF	nc|ENSG00000135083|Q8IV13-2|CCNJL	nc|ENSG00000135083|Q8IV13-2|CCNJL	MULTI-MSMS	HCT116MG_D190212_S2	2	514.7904663085938	2	514.790381	1027.56621	0.41872	0.00021555	0.22149	0.00011402	0.64021	0.00032958	514.7902540451219	47.484	0.30939	47.362	47.182	47.491	-0.12175					12	5	3	0	0	0	0.043218	1	18115	18115		131.27	15.576	1	55674000			9823	7527	5573	5611	9498	9498					0.05352841471949432
EQLSNQLAQ	9	Unmodified	_EQLSNQLAQ_					0	0	0			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MSMS	HCT116MG_D190212_S3	3	515.76171875	2	515.76182	1029.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.448	1	21.467	20.967	21.967	0.018446								0	0	0	0.1947	1	7474	7474		47.749	0	1		+		9824	13533	5574	5612	9499	9499					-0.00448625804438052
EQLSPMPP	8	Unmodified	_EQLSPMPP_					0	0	0			REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MSMS	HCT116MG_D190212_S1	1	449.7224426269531	2	449.720578	897.426604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.063	1	17.063	16.563	17.563	0								0	0	0	0.8837	1	5784	5784		2.8892	0.31174	1		+		9825	13494	5575	5613	9500	9500					-0.02621239136931308
EQLSSKPIII	10	Unmodified	_EQLSSKPIII_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	HCT116MG_D190212_S2	2	564.3362426757812	2	564.337164	1126.65977	0.46887	0.0002646	-2.2741	-0.0012834	-1.8053	-0.0010188	564.3357353417757	17.093	0.15606	16.743	16.665	16.821	-0.34933					4	2	2	0	0	0	0.77749	1	5826	5826		13.906	0	1	6296900	+		9826	11495	5576	5614	9501	9501					0.10151140854395635
EQLTPLIK	8	Unmodified	_EQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2;APOA2|p.K69N|1|0.13|ENSG00000158874|chr1:161222501-161222501|C/A|missense_variant	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S1	1	471.2868347167969	2	471.286943	940.559333	0.036222	1.7071E-05	-0.057113	-2.6917E-05	-0.020891	-9.8457E-06	471.2867470510975	39.943	0.36312	39.943	39.761	40.124	0					14	6	3	0	0	0	0.19352	1	15020	15020		74.929	20.155	1	35759000			9827	4390	5577	5615	9502	9502					0.08667528591388418
EQLTPLIK	8	Unmodified	_EQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2;APOA2|p.K69N|1|0.13|ENSG00000158874|chr1:161222501-161222501|C/A|missense_variant	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S3	3	471.2869567871094	2	471.286943	940.559333	0.060732	2.8622E-05	0.28217	0.00013298	0.3429	0.0001616	471.28689009917395	40.23	0.31237	39.929	39.747	40.06	-0.30137					12	5	3	0	0	0	0.1105	1	14917	14917		92.653	30.081	1	32253000			9828	4390	5577	5615	9503	9503					0.08667528591388418
EQLTPLIK	8	Unmodified	_EQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2;APOA2|p.K69N|1|0.13|ENSG00000158874|chr1:161222501-161222501|C/A|missense_variant	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S4	4	471.2870178222656	2	471.286943	940.559333	0.24549	0.0001157	-0.069246	-3.2635E-05	0.17624	8.306E-05	471.28686822021115	40.341	0.46397	39.963	39.77	40.234	-0.37828					18	9	3	0	0	0	0.12671	1	14778	14778		88.954	30.275	1	19041000			9829	4390	5577	5615	9504	9504					0.08667528591388418
EQMDCVIN	8	Unmodified	_EQMDCVIN_					0	0	0			REV__ENST00000575455.5_1_17:722628-800182:-|nuORF	REV__ENST00000575455.5_1_17:722628-800182:-|nuORF	MSMS	HCT116MG_D190212_S4	4	476.19854736328125	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2401	1	5.9833	5.4833	6.4833	-0.25684								0	0	0	0.8837	1	1903	1903		0.69038	0	1		+		9830	16604	5578	5616	9505	9505					-0.09342377256677992
EQMIIALSFVD	11	Unmodified	_EQMIIALSFVD_					0	0	0			REV__ENSG00000132518|ENST00000254854|GUCY2D	REV__ENSG00000132518|ENST00000254854|GUCY2D	MSMS	HCT116MG_D190212_S2	2	633.2256469726562	2	633.325939	1264.63732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.524	1	35.382	34.882	35.882	-0.14245								0	0	0	0.82357	1	13254	13254		29.841	2.2118	1		+		9831	11995	5579	5617	9506	9506					0.015591733944120278
EQMIIALSFVD	11	Unmodified	_EQMIIALSFVD_					0	0	0			REV__ENSG00000132518|ENST00000254854|GUCY2D	REV__ENSG00000132518|ENST00000254854|GUCY2D	MSMS	HCT116MG_D190212_S2	2	633.32763671875	2	633.325939	1264.63732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.576	1	35.433	34.933	35.933	-0.14245								0	0	0	0.82357	1	13275	13275		29.841	3.5724	1		+		9832	11995	5579	5617	9507	9507					0.015591733944120278
EQNAEDWNLYW	11	Unmodified	_EQNAEDWNLYW_					0	0	0		TTLL2|p.A427*|1|0.08|ENSG00000120440|chr6:167341177-167341178|-/AT|frameshift_variant;TTLL2|p.R425Efs*52|1|0.44|ENSG00000120440|chr6:167341173-167341173|A/-|frameshift_variant;ENSG00000120440|ENST00000239587|TTLL2	TTLL2|p.A427*|1|0.08|ENSG00000120440|chr6:167341177-167341178|-/AT|frameshift_variant	TTLL2|p.A427*|1|0.08|ENSG00000120440|chr6:167341177-167341178|-/AT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	734.3117065429688	2	734.312406	1466.61026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.203	1	23.822	23.322	24.322	-0.38003								0	0	0	0.95273	1	8662	8662		4.897	0	1				9833	2697	5580	5618	9508	9508					-0.1043821889238643
EQNCTQSIP	9	Carbamidomethyl (C)	_EQNC(Carbamidomethyl (C))TQSIP_	EQNC(1)TQSIP		EQNC(44)TQSIP		0	1	0		nc|ENSG00000176040|Q7RTY8-3|TMPRSS7;TMPRSS7|p.W617Lfs*71|1|0.24|ENSG00000176040|chr3:112075378-112075379|-/G|frameshift_variant;nc|ENSG00000176040|Q7RTY8-2|TMPRSS7;ENSG00000176040|ENST00000452346|TMPRSS7	nc|ENSG00000176040|Q7RTY8-3|TMPRSS7	nc|ENSG00000176040|Q7RTY8-3|TMPRSS7	MULTI-MSMS	HCT116MG_D190212_S3	3	538.739013671875	2	538.737488	1075.46042	0.38493	0.00020738	1.0788	0.00058121	1.4638	0.00078859	538.7380409662896	22.744	0.35218	22.725	22.595	22.948	-0.018869					9	6	2	0	0	0	0.1754	1	8006	8006		43.858	7.7313	1	14880000			9834	5401	5581	5619	9509	9509	31				-0.07428862435835981
EQNEFVRDP	9	Unmodified	_EQNEFVRDP_					0	0	0			REV__nc|ENSG00000152942|O75943-3|RAD17	REV__nc|ENSG00000152942|O75943-3|RAD17	MULTI-SECPEP	HCT116MG_D190212_S4	4	567.28173828125	2	567.264727	1132.5149	0.50684	0.00028751	2.5821	0.0014647	3.0889	0.0017522	567.266189795022	27.132	0.25996	26.821	26.69	26.95	-0.3114					7	4	2	0	0	0	0.22781	1	9728	9728		16.942	0	1	4160500	+		9835	12639	5582	5620	9510	9510					-0.04605527292756051
EQNSHTSAN	9	Unmodified	_EQNSHTSAN_					0	0	0			REV__nc|ENSG00000121481|Q99496-2|RNF2	REV__nc|ENSG00000121481|Q99496-2|RNF2	MULTI-MSMS	HCT116MG_D190212_S1	1	494.21026611328125	2	494.209952	986.405351	0.3651	0.00018044	0.022641	1.1189E-05	0.38774	0.00019163	494.2098988996265	18.272	0.2608	18.272	18.089	18.35	0					6	4	2	0	0	0	0.14171	1	6298	6298		49.933	13.806	1	2773900	+		9836	11718	5583	5621	9511	9511					-0.08839532912088544
EQNSHTSAN	9	Unmodified	_EQNSHTSAN_					0	0	0			REV__nc|ENSG00000121481|Q99496-2|RNF2	REV__nc|ENSG00000121481|Q99496-2|RNF2	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7694396972656	2	494.209952	986.405351	-0.13713	-6.7772E-05	0.27305	0.00013494	0.13592	6.7172E-05	494.2099673030822	18.658	0.36399	18.295	18.113	18.477	-0.36325					11	6	2	0	0	0	0.14171	1	6377	6377		49.933	11.782	1	12486000	+		9837	11718	5583	5621	9512	9512					-0.08839532912088544
EQNSHTSAN	9	Unmodified	_EQNSHTSAN_					0	0	0			REV__nc|ENSG00000121481|Q99496-2|RNF2	REV__nc|ENSG00000121481|Q99496-2|RNF2	MULTI-SECPEP	HCT116MG_D190212_S2	2	494.7694396972656	2	494.209952	986.405351	-0.13713	-6.7772E-05	0.27305	0.00013494	0.13592	6.7172E-05	494.2099673030822	18.658	0.36399	18.295	18.113	18.477	-0.36325					11	6	2	0	0	0	0.14889	1	6377	6377		49.933	49.933	1	12486000	+		9838	11718	5583	5621	9513	9513					-0.08839532912088544
EQNYQRWREER	11	Unmodified	_EQNYQRWREER_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9;ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	MSMS	HCT116MG_D190212_S4	4	797.38134765625	2	797.379477	1592.7444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.714	1	30.35	29.85	30.85	-0.36416								0	0	0	0.9598	1	11118	11118		1.1933	0	1				9839	5783;8472	5584	5622	9514	9514					-0.028261403469741708
EQPEDCTMQL	10	Unmodified	_EQPEDCTMQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S3	3	597.2444458007812	2	597.244289	1192.47402	0.53438	0.00031916	-0.30311	-0.00018103	0.23127	0.00013813	597.2440686648637	34.4	0.36364	34.105	33.923	34.287	-0.29419					14	6	3	0	0	0	0.65928	1	12666	12666		23.79	5.4167	1	14362000			9840	6354	5585	5623	9515	9515					-0.11451372718920538
EQPEDCTMQL	10	Unmodified	_EQPEDCTMQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S4	4	597.2446899414062	2	597.244289	1192.47402	0.99515	0.00059435	-0.62308	-0.00037213	0.37207	0.00022222	597.2439967421665	34.499	0.35613	34.113	33.932	34.288	-0.38558					9	6	2	0	0	0	0.65928	1	12594	12594		23.79	5.4167	1	3065100			9841	6354	5585	5623	9516	9516					-0.11451372718920538
EQPEDCTMQL	10	Unmodified	_EQPEDCTMQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	597.244289	1192.47402	0.53438	0.00031916	-0.30311	-0.00018103	0.23127	0.00013813	597.2440686648637	34.4	0.36364	34.105	33.923	34.287	-0.29419	-0.0038727	9.8736E-05	NaN	23.79	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14362000			9842	6354	5585	5623							-0.11451372718920538
EQPEDCTMQL	10	Unmodified	_EQPEDCTMQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	597.244289	1192.47402	0.99515	0.00059435	-0.62308	-0.00037213	0.37207	0.00022222	597.2439967421665	34.499	0.35613	34.113	33.932	34.288	-0.38558	0.0038727	-0.00028346	NaN	23.79	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3065100			9843	6354	5585	5623							-0.11451372718920538
EQPGQAEHQP	10	Unmodified	_EQPGQAEHQP_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3;ENST00000558165.3_1_15:76551329-76551434:-|nuORF	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MSMS	HCT116MG_D190212_S4	4	561.2379150390625	2	560.754527	1119.4945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.581	1	19.387	18.887	19.887	-0.19367								0	0	0	0.82952	1	6650	6650		24.991	3.454	1				9844	1584	5586	5624	9517	9517					-0.06046697952569957
EQPHWFYK	8	Unmodified	_EQPHWFYK_					0	0	0		nc|ENSG00000132837|Q9UI17-2|DMGDH;DMGDH|p.Q527Rfs*2|1|0.04|ENSG00000132837|chr5:79030927-79030936|GCTACTCTTT/-|frameshift_variant;ENST00000518477.5_1_5:78317432-78365396:-|nuORF;DMGDH|p.N837Ifs*13|1|0.28|ENSG00000132837|chr5:78998173-78998173|T/-|frameshift_variant;ENSG00000132837|ENST00000255189|DMGDH	nc|ENSG00000132837|Q9UI17-2|DMGDH	nc|ENSG00000132837|Q9UI17-2|DMGDH	MSMS	HCT116MG_D190212_S1	1	567.7720336914062	2	567.771991	1133.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.727	1	16.727	16.227	17.227	0								0	0	0	0.8837	1	5648	5648		15.847	1.0089	1				9845	691	5587	5625	9518	9518					-0.03199410353977328
EQPLQLLQ	8	Unmodified	_EQPLQLLQ_					0	0	0			REV__ENST00000583204.5_1_17:30348129-30360999:+|nuORF	REV__ENST00000583204.5_1_17:30348129-30360999:+|nuORF	MSMS	HCT116MG_D190212_S3	3	484.7742004394531	2	484.7742	967.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.279	1	43.972	43.472	44.472	-0.30759								0	0	0	0.33717	1	16548	16548		52.268	2.3353	1		+		9846	13830	5588	5626	9519	9519					0.04878054068944948
EQPQPSTLHP	10	Unmodified	_EQPQPSTLHP_					0	0	0			REV__ENST00000574985.1_1_16:2986529-2998725:+|nuORF	REV__ENST00000574985.1_1_16:2986529-2998725:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.28173828125	2	567.28292	1132.55129	0.51357	0.00029134	0.36728	0.00020835	0.88085	0.00049969	567.2831708950996	27.184	0.67526	26.873	26.483	27.158	-0.3114					19	12	2	0	0	0	0.69918	1	9728	9728		20.454	6.5476	1	3938700	+		9847	16595	5589	5627	9520	9520					-0.009686503960438131
EQPRHRFWFLN	11	Unmodified	_EQPRHRFWFLN_					0	0	0			REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF	REV__ENST00000592042.5_1_17:74621414-74633692:-|nuORF	MSMS	HCT116MG_D190212_S1	1	510.5973205566406	3	510.596865	1528.76877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.326	1	15.326	14.826	15.826	0								0	0	0	0.96024	1	5083	5083		0.32927	0	1		+		9848	10755	5590	5628	9521	9521					0.025531645972478145
EQPYKWFLW	9	Unmodified	_EQPYKWFLW_					0	0	0			REV__ENST00000484027.1_1_1:155108806-155110754:+|nuORF	REV__ENST00000484027.1_1_1:155108806-155110754:+|nuORF	MSMS	HCT116MG_D190212_S3	3	432.8856506347656	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1415	1	6.1559	5.6559	6.6559	0.01438								0	0	0	0.77019	1	1853	1853		0.20686	0.047535	1		+		9849	13233	5591	5629	9522	9522					-0.002097085972536661
EQQEEDINR	9	Unmodified	_EQQEEDINR_					0	0	0		ARL6IP5|p.G175D|1|0.13|ENSG00000144746|chr3:69104593-69104593|G/A|missense_variant	ARL6IP5|p.G175D|1|0.13|ENSG00000144746|chr3:69104593-69104593|G/A|missense_variant	ARL6IP5|p.G175D|1|0.13|ENSG00000144746|chr3:69104593-69104593|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	580.819580078125	2	580.762549	1159.51054	0.50145	0.00029122	-0.26746	-0.00015533	0.23399	0.00013589	580.7622250440014	14.703	0.41634	14.783	14.514	14.931	0.079682					11	7	2	0	0	0	0.67781	1	4778	4778		6.7232	0	1	959820			9850	187	5592	5630	9523	9523					-0.06283036506329154
EQQIDMQY	8	Unmodified	_EQQIDMQY_					0	0	0			REV__APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	REV__APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	527.2461547851562	2	527.729132	1053.44371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.966	1	32.681	32.181	33.181	-0.28511								0	0	0	0.8837	1	12102	12102		15.847	1.9411	1		+		9851	9964	5593	5631	9524	9524					-0.08087363321783414
EQQKAAAELAA	11	Unmodified	_EQQKAAAELAA_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	HCT116MG_D190212_S2	2	564.8588256835938	2	565.296027	1128.5775	0.76806	0.00043418	-0.10832	-6.1234E-05	0.65973	0.00037294	565.2963252781707	33.341	0.2063	33.148	33.019	33.225	-0.19297					8	3	3	0	0	0	0.36112	1	12347	12347		15.248	0.8431	1	18016000	+		9852	10758	5594	5632	9525	9525					0.01835618775430703
EQQLMFEKL	9	Unmodified	_EQQLMFEKL_					0	0	0		ENST00000534553.5_1_11:61717864-61722837:+|nuORF;ENST00000524877.5_1_11:61717864-61722837:+|nuORF;ENST00000533521.5_1_11:61719272-61722837:+|nuORF;ENST00000529265.5_1_11:61717864-61725974:+|nuORF;ENSG00000167995|ENST00000378043|BEST1	ENST00000534553.5_1_11:61717864-61722837:+|nuORF	ENST00000534553.5_1_11:61717864-61722837:+|nuORF	MSMS	HCT116MG_D190212_S2	2	389.202880859375	3	389.202242	1164.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.624	1	23.241	22.741	23.741	-0.38324								0	0	0	0.50556	1	8428	8428		20.415	5.1661	1				9853	4971	5595	5633	9526	9526					0.009186350515165032
EQQRGHGPEAE	11	Unmodified	_EQQRGHGPEAE_					0	0	0			REV__ENST00000591120.1_1_19:5621399-5622763:-|nuORF	REV__ENST00000591120.1_1_19:5621399-5622763:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	619.2819213867188	2	619.28144	1236.54833	0.30673	0.00018995	-0.19347	-0.00011981	0.11326	7.0142E-05	619.281224537457	14.799	0.36501	14.479	14.244	14.609	-0.31952					8	6	2	0	0	0	0.44062	1	4873	4873		51.415	20.147	1	3306400	+		9854	16690	5596	5634	9527	9527					-0.06048525520827752
EQQVATGP	8	Unmodified	_EQQVATGP_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	HCT116MG_D190212_S2	2	829.4054565429688	1	829.405023	828.397747	0.82117	0.00068108	0.0029357	2.4349E-06	0.82411	0.00068352	829.4049169517901	23.657	0.6753	23.274	22.936	23.612	-0.38324					22	12	2	0	0	0	0.12693	1	8395	8395		88.904	0	1	28275000			9855	6087	5597	5635	9528	9528					-0.023316404417187186
EQQVATGP	8	Unmodified	_EQQVATGP_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	HCT116MG_D190212_S3	3	829.4054565429688	1	829.405023	828.397747	0.83209	0.00069014	0.14302	0.00011863	0.97511	0.00080876	829.4049053988044	23.375	0.72929	23.335	22.927	23.656	-0.03968					32	13	3	0	0	0	0.076688	1	8184	8184		100.37	0.57254	1	20017000			9856	6087	5597	5635	9529	9529					-0.023316404417187186
EQQVATGP	8	Unmodified	_EQQVATGP_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.G872Vfs*42|1|0.08|ENSG00000196576|chr22:50283401-50283401|C/-|frameshift_variant;PLXNB2|p.V928Cfs*3|1|0.71|ENSG00000196576|chr22:50283084-50283084|C/-|frameshift_variant;PLXNB2|p.V873Cfs*66|1|0.2|ENSG00000196576|chr22:50283400-50283401|-/C|frameshift_variant;PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant;PLXNB2|p.G308Vfs*83|1|0.39|ENSG00000196576|chr22:50289664-50289664|G/-|frameshift_variant	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	HCT116MG_D190212_S4	4	829.406005859375	1	829.405023	828.397747	0.69587	0.00057716	0.30527	0.00025319	1.0011	0.00083035	829.4051390007052	23.545	0.52058	23.298	23.011	23.532	-0.24775					20	9	3	0	0	0	0.12693	1	8232	8232		88.904	3.6316	1	5476800			9857	6087	5597	5635	9530	9530					-0.023316404417187186
EQRCCLRPP	9	Unmodified	_EQRCCLRPP_					0	0	0			REV__ENST00000434558.5_1_1:156708347-156710981:-|nuORF	REV__ENST00000434558.5_1_1:156708347-156710981:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	552.2551879882812	2	551.268235	1100.52192	0.60994	0.00033624	0.27996	0.00015433	0.8899	0.00049057	551.7695427519644	35.137	0.20242	35.137	35.013	35.215	0					5	3	2	0	0	0	0.43775	1	13073	13073		20.454	3.5113	1	8744800	+		9858	15093	5598	5636	9531	9531					-0.02432209217545278
EQRDEETP	8	Unmodified	_EQRDEETP_					0	0	0		ENST00000226094.9_1_17:66537075-66550928:-|nuORF	ENST00000226094.9_1_17:66537075-66550928:-|nuORF	ENST00000226094.9_1_17:66537075-66550928:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	502.22021484375	2	502.219985	1002.42542	0.39186	0.0001968	1.5915	0.0007993	1.9834	0.0009961	502.219939309237	16.391	0.57356	16.049	15.839	16.412	-0.34183					18	10	3	0	0	0	0.34844	1	5525	5525		54.774	3.1437	1	6989100			9859	6764	5599	5637	9532	9532					-0.07569781972131295
EQRERKLFWLF	11	Unmodified	_EQRERKLFWLF_					0	0	0			REV__nc|ENSG00000026751|Q9NQ25-2|SLAMF7	REV__nc|ENSG00000026751|Q9NQ25-2|SLAMF7	MSMS	HCT116MG_D190212_S1	1	776.4216918945312	2	776.425168	1550.83578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.769	1	19.769	19.269	20.269	0								0	0	0	0.9598	1	6874	6874		1.1933	0	1		+		9860	10565	5600	5638	9533	9533					0.08239775088304668
EQRERKLFWLF	11	Unmodified	_EQRERKLFWLF_					0	0	0			REV__nc|ENSG00000026751|Q9NQ25-2|SLAMF7	REV__nc|ENSG00000026751|Q9NQ25-2|SLAMF7	MSMS	HCT116MG_D190212_S2	2	776.4285278320312	2	776.425168	1550.83578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.71	1	22.325	21.825	22.825	-0.3852								0	0	0	0.9598	1	8059	8059		1.1933	0	1		+		9861	10565	5600	5638	9534	9534					0.08239775088304668
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	HCT116MG_D190212_S1	1	774.1519775390625	2	773.961106	1545.90766	0.93603	0.00072445	-0.36769	-0.00028457	0.56834	0.00043988	773.9608517866666	53.564	0.77191	53.564	53.05	53.822	0					27	14	2	0	0	0	0.74191	1	20620	20620		0	0	1	58798000			9862	5913	5601	5639	9535	9535					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	HCT116MG_D190212_S1	1	516.3097534179688	3	516.309829	1545.90766	0.4936	0.00025485	-0.071662	-3.7E-05	0.42194	0.00021785	516.3097573367328	54.571	1.8868	54.571	53.822	55.709	0					182	36	7	0	0	0	0.74191	3	20907	20907;21039;21138		0.073264	0.073264	1	849800000			9863	5913	5601	5639	9536;9537;9538	9536					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	HCT116MG_D190212_S2	2	773.9612426757812	2	773.961106	1545.90766	0.95324	0.00073777	-0.067827	-5.2495E-05	0.88541	0.00068527	773.9609534021661	55.226	1.9988	55.038	53.792	55.791	-0.18797					97	38	4	0	0	0	0.74191	1	21170	21170		0.26902	0.26902	1	288530000			9864	5913	5601	5639	9539	9539					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7688598632812	3	516.309829	1545.90766	0.23724	0.00012249	0.2158	0.00011142	0.45304	0.00023391	516.3098890813936	55.232	1.8969	55.044	53.792	55.689	-0.18797					130	36	5	0	0	0	0.74191	1	21482	21482		0.073264	0	1	395650000			9865	5913	5601	5639	9540	9540					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	HCT116MG_D190212_S4	4	773.9613647460938	2	773.961106	1545.90766	0.99009	0.00076629	-0.030259	-2.3419E-05	0.95983	0.00074287	773.960845194618	55.355	0.83377	55.037	54.51	55.344	-0.31774					32	15	3	0	0	0	0.74191	1	20697	20697		0	0	1	8907800			9866	5913	5601	5639	9541	9541					0.1565412728539286
EQRMVKQFHKK	11	Unmodified	_EQRMVKQFHKK_					0	0	0			REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	729.90234375	2	729.903545	1457.79254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.994	1	53.695	53.195	54.195	-0.29946								0	0	0	0.9387	1	20449	20449		12.241	3.4953	1		+		9867	10005	5602	5640	9542	9542					0.08195262039362206
EQRMVKQFHKK	11	Unmodified	_EQRMVKQFHKK_					0	0	0			REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	729.9024658203125	2	729.903545	1457.79254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.57	1	54.274	53.774	54.774	-0.29587								0	0	0	0.95273	1	20680	20680		4.897	0.95262	1		+		9868	10005	5602	5640	9543	9543					0.08195262039362206
EQRMVKQFHKK	11	Unmodified	_EQRMVKQFHKK_					0	0	0			REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	729.9027099609375	2	729.903545	1457.79254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.14	1	54.848	54.348	55.348	-0.2918								0	0	0	0.9465	1	20910	20910		8.1555	1.9497	1		+		9869	10005	5602	5640	9544	9544					0.08195262039362206
EQRMVKQFHKK	11	Unmodified	_EQRMVKQFHKK_					0	0	0			REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	729.9026489257812	2	729.903545	1457.79254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.726	1	55.438	54.938	55.938	-0.28773								0	0	0	0.95273	1	21141	21141		4.897	1.6157	1		+		9870	10005	5602	5640	9545	9545					0.08195262039362206
EQRMVKQFHKK	11	Unmodified	_EQRMVKQFHKK_					0	0	0			REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	REV__ATG5|p.K235Rfs*4|1|0.33|ENSG00000057663|chr6:106186664-106186664|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	729.902587890625	2	729.903545	1457.79254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.812	1	52.472	51.972	52.972	-0.34023								0	0	0	0.9465	1	19699	19699		8.1555	1.9497	1		+		9871	10005	5602	5640	9546	9546					0.08195262039362206
EQRPDGAPGA	10	Unmodified	_EQRPDGAPGA_					0	0	0		ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	MULTI-MSMS	HCT116MG_D190212_S4	4	499.2388610839844	2	499.238513	996.462472	-0.15526	-7.7512E-05	0.37529	0.00018736	0.22003	0.00010985	499.23892870661444	16.56	0.24307	16.393	16.261	16.504	-0.16664					8	4	2	0	0	0	0.65928	1	5439	5439		23.79	2.1996	1	1212500			9872	5161	5603	5641	9547	9547					-0.0359006563571711
EQRQLPQGDYV	11	Unmodified	_EQRQLPQGDYV_					0	0	0		nc|ENSG00000008277|Q9P0K1-3|ADAM22;nc|ENSG00000008277|Q9P0K1|ADAM22;ENSG00000008277|ENST00000413139|ADAM22	nc|ENSG00000008277|Q9P0K1-3|ADAM22	nc|ENSG00000008277|Q9P0K1-3|ADAM22	MSMS	HCT116MG_D190212_S3	3	666.8311157226562	2	666.830766	1331.64698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.498	1	18.575	18.075	19.075	0.076334								0	0	0	0.78956	1	6286	6286		34.222	1.436	1				9873	861	5604	5642	9548	9548					-0.0055792227581150655
EQRRKLRRRL	10	Unmodified	_EQRRKLRRRL_					0	0	0			REV__nc|ENSG00000131188|Q8TB68-2|PRR7	REV__nc|ENSG00000131188|Q8TB68-2|PRR7	MSMS	HCT116MG_D190212_S2	2	706.0311889648438	2	705.947467	1409.88038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.555	1	42.485	41.985	42.985	-0.069984								0	0	0	0.96453	1	16110	16110		1.4819	0	1		+		9874	11959	5605	5643	9549	9549					0.1918364374500925
EQRRRRRRRR	10	Unmodified	_EQRRRRRRRR_					0	0	0			REV__nc|ENSG00000149177|Q12913-3|PTPRJ	REV__nc|ENSG00000149177|Q12913-3|PTPRJ	MSMS	HCT116MG_D190212_S2	2	762.9674072265625	2	762.967588	1523.92062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.61	1	40.541	40.041	41.041	-0.069626								0	0	0	0.96864	1	15320	15320		1.3295	0	1		+		9875	17159	5606	5644	9550	9550					0.17962003188131348
EQRTLNLSQA	10	Unmodified	_EQRTLNLSQA_					0	0	0			REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	MULTI-MSMS	HCT116MG_D190212_S2	2	580.306640625	2	580.306926	1158.5993	0.44039	0.00025556	-0.042617	-2.4731E-05	0.39777	0.00023083	580.306780745878	16.624	0.20824	16.282	16.204	16.412	-0.34183					5	3	2	0	0	0	0.75066	1	5637	5637		16.149	3.9084	1	4224100	+		9876	13436	5607	5645	9551	9551					0.026344235240230773
EQRYRQAIPNV	11	Unmodified	_EQRYRQAIPNV_					0	0	0		ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	MSMS	HCT116MG_D190212_S4	4	687.3701171875	2	687.36785	1372.72115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.547	1	52.207	51.707	52.707	-0.34023								0	0	0	0.95408	1	19592	19592		4.1895	0.90819	1				9877	2588	5608	5646	9552	9552					0.04969465606382073
EQSGVKFSDP	10	Unmodified	_EQSGVKFSDP_					0	0	0			REV__nc|ENSG00000095303|P23219-4|PTGS1	REV__nc|ENSG00000095303|P23219-4|PTGS1	MULTI-SECPEP	HCT116MG_D190212_S2	2	546.5697631835938	2	547.261653	1092.50875	0.39395	0.0002156	-0.63302	-0.00034643	-0.23907	-0.00013083	547.2611778463532	23.137	0.20825	22.752	22.622	22.83	-0.3852					5	3	2	0	0	0	0.2916	1	8238	8238		12.241	4.6317	1	3961400	+		9878	11023	5609	5647	9553	9553					-0.03380045524272646
EQSIVSKLGP	10	Unmodified	_EQSIVSKLGP_					0	0	0		DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant	DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant	DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	529.2979736328125	2	529.298039	1056.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.99	1	29.99	29.49	30.49	0								0	0	0	0.87399	1	10982	10982		19.257	3.4098	1				9879	636	5610	5648	9554	9554					0.0554970826913177
EQSIVSKLGP	10	Unmodified	_EQSIVSKLGP_					0	0	0		DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant	DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant	DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	529.2977294921875	2	529.298039	1056.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.607	1	30.242	29.742	30.742	-0.36416								0	0	0	0.90892	1	11077	11077		13.906	0	1				9880	636	5610	5648	9555	9555					0.0554970826913177
EQSKLKRY	8	Unmodified	_EQSKLKRY_					0	0	0		nc|ENSG00000122432|Q5VX52-4|SPATA1;ENSG00000122432|ENST00000699524|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1	nc|ENSG00000122432|Q5VX52-4|SPATA1	nc|ENSG00000122432|Q5VX52-4|SPATA1	MSMS	HCT116MG_D190212_S2	2	526.2981567382812	2	526.298373	1050.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.168	1	18.798	18.298	19.298	-0.3695								0	0	0	0.8837	1	6631	6631		12.532	0.89125	1				9881	2763	5611	5649	9556	9556					0.058925477088678235
EQSRWAPE	8	Unmodified	_EQSRWAPE_					0	0	0		ENST00000295974.12_1_4:41145057-41216499:-|nuORF	ENST00000295974.12_1_4:41145057-41216499:-|nuORF	ENST00000295974.12_1_4:41145057-41216499:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	501.7360534667969	2	501.735606	1001.45666	0.59451	0.00029829	-0.16622	-8.3398E-05	0.42829	0.00021489	501.73536829189624	29.932	0.26649	29.696	29.555	29.822	-0.23655					8	4	3	0	0	0	0.37603	1	10908	10908		52.268	12.311	1	6085500			9882	6979	5612	5650	9557	9557					-0.044011641473844065
EQSRWAPE	8	Unmodified	_EQSRWAPE_					0	0	0		ENST00000295974.12_1_4:41145057-41216499:-|nuORF	ENST00000295974.12_1_4:41145057-41216499:-|nuORF	ENST00000295974.12_1_4:41145057-41216499:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	501.73577880859375	2	501.735606	1001.45666	0.31757	0.00015934	0.50707	0.00025442	0.82464	0.00041375	501.73563680140353	30.084	0.20814	29.727	29.597	29.805	-0.3571					5	3	2	0	0	0	0.51336	1	10910	10910		39.957	5.8549	1	2119500			9883	6979	5612	5650	9558	9558					-0.044011641473844065
EQTKRRLV	8	Unmodified	_EQTKRRLV_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MSMS	HCT116MG_D190212_S2	2	515.3114624023438	2	515.311815	1028.60908	0.090706	4.6742E-05	-0.0016328	-8.4139E-07	0.089073	4.59E-05	515.3117493436197	15.58	0.2084	15.253	15.175	15.384	-0.32684					5	3	2	0	0	0	0.73234	1	5217	5217		19.257	3.4098	1	2119800	+		9884	11596	5613	5651	9559	9559					0.09591656320026232
EQTKRRLV	8	Unmodified	_EQTKRRLV_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.2698364257812	2	515.311815	1028.60908	0.090706	4.6742E-05	-0.0016328	-8.4139E-07	0.089073	4.59E-05	515.3117493436197	15.58	0.2084	15.253	15.175	15.384	-0.32684					5	3	2	0	0	0	0.2707	1	5231	5231		19.257	3.4098	1	2119800	+		9885	11596	5613	5651	9560	9560					0.09591656320026232
EQTLVAFQYHR	11	Unmodified	_EQTLVAFQYHR_					0	0	0		PRDM9|p.N329T|1|0.35|ENSG00000164256|chr5:23524369-23524369|A/C|missense_variant	PRDM9|p.N329T|1|0.35|ENSG00000164256|chr5:23524369-23524369|A/C|missense_variant	PRDM9|p.N329T|1|0.35|ENSG00000164256|chr5:23524369-23524369|A/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	696.355224609375	2	696.356951	1390.69935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.197	1	56.015	55.515	56.515	-0.18261								0	0	0	0.94385	1	21680	21680		9.544	1.935	1				9886	9778	5614	5652	9561	9561					0.019626608577937077
EQTPSSPQTW	10	Unmodified	_EQTPSSPQTW_					0	0	0			REV__KLHL30|p.G573S|1|0.16|ENSG00000168427|chr2:238151045-238151045|G/A|missense_variant	REV__KLHL30|p.G573S|1|0.16|ENSG00000168427|chr2:238151045-238151045|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	581.2664794921875	2	580.76456	1159.51457	0.24885	0.00014453	-0.14981	-8.7003E-05	0.099046	5.7523E-05	580.7643343808793	35.085	0.41274	34.699	34.441	34.853	-0.38605					12	7	2	0	0	0	0.6277	1	12857	12857		26.268	1.2772	1	2557700	+		9887	16931	5615	5653	9562	9562					-0.05880947012633442
EQVDINPQY	9	Unmodified	_EQVDINPQY_					0	0	0			REV__CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	REV__CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	553.2606201171875	2	553.261653	1104.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.778	1	35.478	34.978	35.978	-0.29971								0	0	0	0.61599	1	13197	13197		23.148	1.6114	1		+		9888	10128	5616	5654	9563	9563					-0.039320455242886965
EQVFARHL	8	Unmodified	_EQVFARHL_					0	0	0			REV__SCNN1G|p.K626Qfs*23|1|0.1|ENSG00000166828|chr16:23215388-23215389|-/C|frameshift_variant	REV__SCNN1G|p.K626Qfs*23|1|0.1|ENSG00000166828|chr16:23215388-23215389|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	500.271484375	2	500.272158	998.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.667	1	36.282	35.782	36.782	-0.38486								0	0	0	0.77419	1	13427	13427		24.674	6.5389	1		+		9889	13126	5617	5655	9564	9564					0.030440093659080958
EQVNQDVSR	9	Unmodified	_EQVNQDVSR_					0	0	0		ENST00000566894.1_1_15:75194962-75197073:-|nuORF;ENSG00000178761|ENST00000357635|FAM219B	ENST00000566894.1_1_15:75194962-75197073:-|nuORF	ENST00000566894.1_1_15:75194962-75197073:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7620239257812	2	537.762352	1073.51015	0.31351	0.0001686	-0.86248	-0.00046381	-0.54897	-0.00029522	537.7617749586342	39.993	0.15395	39.691	39.645	39.799	-0.30137					6	3	2	0	0	0	0.2853	1	14848	14848		32.305	2.4649	1	10234000			9890	5514	5618	5656	9565	9565					-0.023664114355142374
EQVNQDVSR	9	Unmodified	_EQVNQDVSR_					0	0	0		ENST00000566894.1_1_15:75194962-75197073:-|nuORF;ENSG00000178761|ENST00000357635|FAM219B	ENST00000566894.1_1_15:75194962-75197073:-|nuORF	ENST00000566894.1_1_15:75194962-75197073:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	537.762352	1073.51015	0.32217	0.00017325	-1.4213	-0.0007643	-1.0991	-0.00059104	537.7616375544695	39.697	0.30847	39.619	39.477	39.785	-0.077835	-0.045661	-0.00059292	NaN	32.305	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19104000			9891	5514	5618	5656							-0.023664114355142374
EQVNQDVSR	9	Unmodified	_EQVNQDVSR_					0	0	0		ENST00000566894.1_1_15:75194962-75197073:-|nuORF;ENSG00000178761|ENST00000357635|FAM219B	ENST00000566894.1_1_15:75194962-75197073:-|nuORF	ENST00000566894.1_1_15:75194962-75197073:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	537.762352	1073.51015	0.31351	0.0001686	-0.86248	-0.00046381	-0.54897	-0.00029522	537.7617749586342	39.993	0.15395	39.691	39.645	39.799	-0.30137	0.026717	8.0509E-06	NaN	32.305	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10234000			9892	5514	5618	5656							-0.023664114355142374
EQVRTLLAK	9	Unmodified	_EQVRTLLAK_					0	0	0			REV__CCP110|p.F187Lfs*22|1|0.11|ENSG00000103540|chr16:19536229-19536230|-/GC|frameshift_variant	REV__CCP110|p.F187Lfs*22|1|0.11|ENSG00000103540|chr16:19536229-19536230|-/GC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.3223876953125	2	529.321848	1056.62914	0.75744	0.00040093	-0.030564	-1.6178E-05	0.72687	0.00038475	529.321844882716	33.341	0.36064	33.148	32.966	33.327	-0.19297					16	6	4	0	0	0	0.06555	1	12370	12370		82.529	12.197	1	201410000	+		9893	10125	5619	5657	9566	9566					0.10309407260001535
EQVRTLLAK	9	Unmodified	_EQVRTLLAK_					0	0	0			REV__CCP110|p.F187Lfs*22|1|0.11|ENSG00000103540|chr16:19536229-19536230|-/GC|frameshift_variant	REV__CCP110|p.F187Lfs*22|1|0.11|ENSG00000103540|chr16:19536229-19536230|-/GC|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	529.321848	1056.62914	0.70019	0.00037062	-0.44215	-0.00023404	0.25804	0.00013658	529.3215273957076	33.626	0.27382	33.241	33.088	33.362	-0.38426	0.07558	-0.0003473	NaN	82.529	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10526000	+		9894	10125	5619	5657							0.10309407260001535
EQVTSGLGKP	10	Unmodified	_EQVTSGLGKP_					0	0	0			REV__ENSG00000066583|ENST00000173527|ISOC1	REV__ENSG00000066583|ENST00000173527|ISOC1	MSMS	HCT116MG_D190212_S3	3	508.2751770019531	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.014	1	24.908	24.408	25.408	-0.10618								0	0	0	0.90475	1	8911	8911		14.838	2.3067	1		+		9895	10719	5620	5658	9567	9567					0.027888487180121047
EQWSLREV	8	Unmodified	_EQWSLREV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S1	1	523.7669067382812	2	523.766906	1045.51926	0.60716	0.00031801	-0.36289	-0.00019007	0.24427	0.00012794	523.7666814568286	37.629	0.26055	37.629	37.499	37.759	0					7	4	2	0	0	0	0.66231	1	14097	14097		26.884	0.61551	1	7285900			9896	1937	5621	5659	9568	9568					-0.0016801807919364364
EQWWLKLRPLM	11	Unmodified	_EQWWLKLRPLM_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MSMS	HCT116MG_D190212_S3	3	750.4110717773438	2	750.413214	1498.81188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.888	1	48.572	48.072	49.072	-0.31596								0	0	0	0.95521	1	18398	18398		3.5965	0.8613	1				9897	9376	5622	5660	9569	9569					0.0824221833026968
EQWWLKLRPLM	11	Unmodified	_EQWWLKLRPLM_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MSMS	HCT116MG_D190212_S4	4	750.4124145507812	2	750.413214	1498.81188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.66	1	48.293	47.793	48.793	-0.36728								0	0	0	0.95521	1	18028	18028		3.5965	2.1146	1				9898	9376	5622	5660	9570	9570					0.0824221833026968
EQYCFLRFLQR	11	Unmodified	_EQYCFLRFLQR_					0	0	0			REV__ZNF500|p.P312Hfs*29|1|0.17|ENSG00000103199|chr16:4752884-4752884|G/-|frameshift_variant	REV__ZNF500|p.P312Hfs*29|1|0.17|ENSG00000103199|chr16:4752884-4752884|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	751.8823852539062	2	751.882278	1501.75	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.587	1	47.218	46.718	47.718	-0.36907								0	0	0	0.9465	1	17598	17598		8.1555	2.8586	1		+		9899	11184	5623	5661	9571	9571					0.019198669111347044
EQYNDSYNC	9	Unmodified	_EQYNDSYNC_					0	0	0			REV__nc|ENSG00000159784|Q86XD5|FAM131B	REV__nc|ENSG00000159784|Q86XD5|FAM131B	MSMS	HCT116MG_D190212_S3	3	568.2020263671875	2	568.203478	1134.3924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.369	1	48.053	47.553	48.553	-0.31596								0	0	0	0.76718	1	18190	18190		10.824	1.4408	1		+		9900	12812	5624	5662	9572	9572					-0.1694173208650227
EQYRKTDFYLY	11	Unmodified	_EQYRKTDFYLY_					0	0	0			REV__PSMD11|p.S135Y|1|0.33|ENSG00000108671|chr17:32464534-32464534|C/A|missense_variant	REV__PSMD11|p.S135Y|1|0.33|ENSG00000108671|chr17:32464534-32464534|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	763.3677368164062	2	763.369724	1524.72489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.805	1	32.426	31.926	32.926	-0.37924								0	0	0	0.95925	1	11963	11963		1.4819	0.28856	1		+		9901	17449	5625	5663	9573	9573					-0.016479094104170144
ERAGPGAPA	9	Unmodified	_ERAGPGAPA_					0	0	0			REV__ENST00000219271.3_1_16:58059493-58060384:+|nuORF	REV__ENST00000219271.3_1_16:58059493-58060384:+|nuORF	MSMS	HCT116MG_D190212_S4	4	413.2143249511719	2	413.214309	824.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.966	1	16.799	16.299	17.299	-0.16664								0	0	0	0.69648	1	5593	5593		19.257	1.122	1		+		9902	14514	5626	5664	9574	9574					-0.005165144849684111
ERAQQVAVQE	10	Unmodified	_ERAQQVAVQE_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30698694-30708587:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MSMS	HCT116MG_D190212_S3	3	386.1764221191406	3	386.53516	1156.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.517	1	20.552	20.052	21.052	0.034473								0	0	0	0.94857	1	7100	7100		5.0475	0.15051	1				9903	3471	5627	5665	9575	9575					0.011621370069178738
ERARPPPPP	9	Unmodified	_ERARPPPPP_					0	0	0		ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7857971191406	2	508.785433	1015.55631	0.18305	9.3131E-05	0.041621	2.1176E-05	0.22467	0.00011431	508.7854946144149	18.188	0.26099	17.832	17.702	17.963	-0.35647					8	4	2	0	0	0	0.19461	1	6276	6276		41.84	16.44	1	3652800			9904	5403	5628	5666	9576	9576					0.04915698257218537
ERARPPPPP	9	Unmodified	_ERARPPPPP_					0	0	0		ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MULTI-MSMS	HCT116MG_D190212_S2	2	508.78515625	2	508.785433	1015.55631	0.33098	0.0001684	-0.66029	-0.00033595	-0.32931	-0.00016755	508.7849944948106	19.242	0.67776	18.872	18.471	19.148	-0.3695					16	12	2	0	0	0	0.19461	1	6682	6682		41.84	14.211	1	7693500			9905	5403	5628	5666	9577	9577					0.04915698257218537
ERARPPPPP	9	Unmodified	_ERARPPPPP_					0	0	0		ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MULTI-MSMS	HCT116MG_D190212_S3	3	508.78594970703125	2	508.785433	1015.55631	0.032934	1.6756E-05	-0.013204	-6.7178E-06	0.019731	1.0039E-05	508.78551052915185	16.958	0.46823	17.042	16.912	17.381	0.084467					11	8	2	0	0	0	0.097615	1	5692	5692		58.679	26.373	1	2401600			9906	5403	5628	5666	9578	9578					0.04915698257218537
ERARPPPPP	9	Unmodified	_ERARPPPPP_					0	0	0		ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MULTI-MSMS	HCT116MG_D190212_S3	3	509.2868957519531	2	508.785433	1015.55631	0.1263	6.4258E-05	-0.43468	-0.00022116	-0.30838	-0.0001569	509.28689524103686	18.154	0.3642	18.231	18.049	18.413	0.076334					8	6	2	0	0	0	0.16144	1	6164	6164		46.021	15.384	1	1695900			9907	5403	5628	5666	9579	9579					0.04915698257218537
ERARPPPPP	9	Unmodified	_ERARPPPPP_					0	0	0		ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MSMS	HCT116MG_D190212_S4	4	508.7848205566406	2	508.785433	1015.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.457	1	17.287	16.787	17.787	-0.17047								0	0	0	0.74436	1	5792	5792		16.942	5.302	1				9908	5403	5628	5666	9580	9580					0.04915698257218537
ERDLWQENHLM	11	Unmodified	_ERDLWQENHLM_					0	0	0		ENST00000434304.2_1_22:17154630-17158220:-|nuORF;nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ANKRD62|p.L785Cfs*20|1|0.67|ENSG00000181626|chr18:12126174-12126174|T/-|frameshift_variant;ENSG00000181626|ENST00000587848|ANKRD62	ENST00000434304.2_1_22:17154630-17158220:-|nuORF	ENST00000434304.2_1_22:17154630-17158220:-|nuORF	MSMS	HCT116MG_D190212_S3	3	490.8983459472656	3	490.897992	1469.67215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.566	1	52.26	51.76	52.76	-0.30639								0	0	0	0.95976	1	19875	19875		1.2148	0.70888	1				9909	141	5629	5667	9581	9581					-0.04390190744902611
ERDSMYSQMWQ	11	Unmodified	_ERDSMYSQMWQ_					0	0	0		GRID2|p.R710Q|1|0.27|ENSG00000152208|chr4:93515347-93515347|G/A|missense_variant	GRID2|p.R710Q|1|0.27|ENSG00000152208|chr4:93515347-93515347|G/A|missense_variant	GRID2|p.R710Q|1|0.27|ENSG00000152208|chr4:93515347-93515347|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	487.5377502441406	3	487.535955	1459.58603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.365	1	17.194	16.694	17.694	-0.17047								0	0	0	0.95743	1	5755	5755		2.4348	0.97967	1				9910	9197	5630	5668	9582	9582					-0.12537518641897805
ERDYLKQSYT	10	Unmodified	_ERDYLKQSYT_					0	0	0		PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant	PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant	PPP2R5E|p.T201Qfs*26|1|0.36|ENSG00000154001|chr14:63396665-63396665|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	434.88262939453125	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9499	1	4.9499	4.4499	5.4499	0								0	0	0	0.9696	1	1494	1494		0.12286	0	1				9911	9773	5631	5669	9583	9583					-0.013567270243811436
EREGELDVK	9	Unmodified	_EREGELDVK_					0	0	0			REV__ENSG00000181467|ENST00000323534|RAP2B	REV__ENSG00000181467|ENST00000323534|RAP2B	MULTI-SECPEP	HCT116MG_D190212_S4	4	358.8584289550781	3	358.852377	1073.5353	-0.0045477	-1.6319E-06	0.66404	0.00023829	0.65949	0.00023666	358.85240169503464	21.307	0.31182	21.097	20.967	21.279	-0.20959					9	5	3	0	0	0	0.25857	1	7416	7416		3.5871	0	1	3073800	+		9912	13692	5632	5670	9584	9584					0.0014764336706321046
EREKRLDKP	9	Unmodified	_EREKRLDKP_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant;ZMYM4|p.D200*|1|0.37|ENSG00000146463|chr1:35359429-35359430|-/T|frameshift_variant;ZMYM4|p.I347Sfs*51|1|0.15|ENSG00000146463|chr1:35370479-35370479|A/-|frameshift_variant;ZMYM4|p.Y806Ifs*12|1|0.16|ENSG00000146463|chr1:35389058-35389059|-/A|frameshift_variant;ZMYM4|p.A956Sfs*68|1|0.38|ENSG00000146463|chr1:35393690-35393691|-/A|frameshift_variant	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	HCT116MG_D190212_S3	3	391.2840270996094	3	390.891166	1169.65167	-0.10845	-4.2394E-05	0.13997	5.4715E-05	0.031519	1.2321E-05	390.8911990963296	21.516	0.78867	21.535	21.011	21.799	0.018446					30	14	3	0	0	0	0.66792	1	7436	7436		4.5289	0.33936	1	8662400			9913	3951	5633	5671	9585	9585					0.07363006657601545
EREQELLAI	9	Unmodified	_EREQELLAI_					0	0	0		NLRP3|p.A227Rfs*13|1|0.29|ENSG00000162711|chr1:247424118-247424118|G/-|frameshift_variant;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF;NLRP3|p.S735Ffs*11|1|0.08|ENSG00000162711|chr1:247429627-247429628|-/T|frameshift_variant;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3	NLRP3|p.A227Rfs*13|1|0.29|ENSG00000162711|chr1:247424118-247424118|G/-|frameshift_variant	NLRP3|p.A227Rfs*13|1|0.29|ENSG00000162711|chr1:247424118-247424118|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	550.8013916015625	2	550.800946	1099.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.038	1	37.737	37.237	38.237	-0.30137								0	0	0	0.41664	1	14077	14077		32.786	1.5173	1				9914	4545	5634	5672	9586	9586					0.041528067808030755
ERESLLLDTT	10	Unmodified	_ERESLLLDTT_					0	0	0		ENSG00000139182|ENST00000266546|CLSTN3;nc|ENSG00000139182|Q9BQT9-2|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	MULTI-MSMS	HCT116MG_D190212_S2	2	588.8089599609375	2	588.808968	1175.60338	0.59074	0.00034783	-0.19046	-0.00011214	0.40028	0.00023569	588.8087553331478	28.126	0.36289	27.796	27.615	27.977	-0.32987					14	6	3	0	0	0	0.78781	1	10251	10251		13.042	13.042	1	123330000			9915	3608	5635	5673	9587	9587					0.022604682270639387
ERETAEVRW	9	Unmodified	_ERETAEVRW_					0	0	0			REV__ENST00000450877.5_1_7:110603612-111031956:-|nuORF	REV__ENST00000450877.5_1_7:110603612-111031956:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	587.6273193359375	2	588.293819	1174.57309	0.69387	0.0004082	-1.8716	-0.001101	-1.1777	-0.00069283	588.2929804489967	20.286	0.62538	20.286	20.123	20.748	0					14	11	2	0	0	0	0.25004	1	7238	7238		3.5965	0	1	4704600	+		9916	15710	5636	5674	9588	9588					-0.007218456474902268
ERFKDHEWR	9	Unmodified	_ERFKDHEWR_					0	0	0			REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	MSMS	HCT116MG_D190212_S4	4	434.8822326660156	3	434.882782	1301.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3201	1	2.0556	1.5556	2.5556	-0.26456								0	0	0	0.77012	1	712	712		0.20686	0	1		+		9917	11343	5637	5675	9589	9589					-0.012230481449705621
ERGEEVQQFN	10	Unmodified	_ERGEEVQQFN_					0	0	0			REV__ENST00000583359.1_1_17:80407582-80408586:-|nuORF	REV__ENST00000583359.1_1_17:80407582-80408586:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	617.9609375	2	618.286191	1234.55783	0.39208	0.00024242	-0.09412	-5.8193E-05	0.29796	0.00018422	618.2864426938345	18.168	0.56944	17.993	17.688	18.257	-0.17501					20	10	3	0	0	0	0.60826	1	6037	6037		27.629	0.74515	1	5324500	+		9918	16637	5638	5676	9590	9590					-0.05006757235310033
ERGEHLGP	8	Unmodified	_ERGEHLGP_					0	0	0			REV__nc|ENSG00000184381|O60733-4|PLA2G6	REV__nc|ENSG00000184381|O60733-4|PLA2G6	MULTI-MSMS	HCT116MG_D190212_S2	2	448.25323486328125	2	447.725041	893.435529	0.13934	6.2386E-05	2.7135	0.0012149	2.8529	0.0012773	447.72520865746	20.976	0.41605	20.594	20.443	20.859	-0.38288					12	7	2	0	0	0	0.62424	2	7387	7387;7389		30.225	0	1	4735200	+		9919	17243	5639	5677	9591;9592	9591					-0.015451294562353723
ERGRPRKSK	9	Unmodified	_ERGRPRKSK_					0	0	0		ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	MSMS	HCT116MG_D190212_S1	1	371.89105224609375	3	371.891501	1112.65267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.749	1	10.749	10.249	11.249	0								0	0	0	0.77019	1	3322	3322		0.20686	0	1				9920	2681	5640	5678	9593	9593					0.10085265817156142
ERGYSFTTSAQ	11	Unmodified	_ERGYSFTTSAQ_					0	0	0		ENST00000450451.1_1_1:238090483-238090852:+|nuORF	ENST00000450451.1_1_1:238090483-238090852:+|nuORF	ENST00000450451.1_1_1:238090483-238090852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	623.7888793945312	2	623.788566	1245.56258	0.34193	0.00021329	-0.093104	-5.8077E-05	0.24883	0.00015521	623.7884947566778	30.875	0.64075	30.614	30.277	30.917	-0.26071					22	13	2	0	0	0	0.67406	1	11230	11230		27.223	4.487	1	8704600			9921	7982	5641	5679	9594	9594					-0.05037873092555856
ERGYSFTTSAQ	11	Unmodified	_ERGYSFTTSAQ_					0	0	0		ENST00000450451.1_1_1:238090483-238090852:+|nuORF	ENST00000450451.1_1_1:238090483-238090852:+|nuORF	ENST00000450451.1_1_1:238090483-238090852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	623.788818359375	2	623.788566	1245.56258	0.26985	0.00016833	0.046924	2.9271E-05	0.31677	0.0001976	623.7886255657594	30.829	0.76066	30.465	30.165	30.926	-0.36416					33	23	2	0	0	0	0.67406	1	11178	11178		27.223	4.487	1	6479400			9922	7982	5641	5679	9595	9595					-0.05037873092555856
ERGYSFTTSAQ	11	Unmodified	_ERGYSFTTSAQ_					0	0	0		ENST00000450451.1_1_1:238090483-238090852:+|nuORF	ENST00000450451.1_1_1:238090483-238090852:+|nuORF	ENST00000450451.1_1_1:238090483-238090852:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	623.788566	1245.56258	0.34193	0.00021329	-0.093104	-5.8077E-05	0.24883	0.00015521	623.7884947566778	30.875	0.64075	30.614	30.277	30.917	-0.26071	0.074475	-0.00011156	NaN	27.223	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8704600			9923	7982	5641	5679							-0.05037873092555856
ERIKSPEVLI	10	Unmodified	_ERIKSPEVLI_					0	0	0		ENSG00000198553|ENST00000312942|KCNRG	ENSG00000198553|ENST00000312942|KCNRG	ENSG00000198553|ENST00000312942|KCNRG	MSMS	HCT116MG_D190212_S2	2	395.23870849609375	3	395.239684	1182.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.693	1	24.313	23.813	24.813	-0.38003								0	0	0	0.88261	1	8860	8860		11.518	4.4162	1				9924	6239	5642	5680	9596	9596					0.11318232119992899
ERIVKAYRPCL	11	Unmodified	_ERIVKAYRPCL_					0	0	0			REV__ZC3HAV1|p.F145Lfs*49|2|0.2|ENSG00000105939|chr7:139089633-139089633|A/-|frameshift_variant	REV__ZC3HAV1|p.F145Lfs*49|2|0.2|ENSG00000105939|chr7:139089633-139089633|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	674.3836059570312	2	674.381914	1346.74928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.49	1	22.105	21.605	22.605	-0.3852								0	0	0	0.94145	1	7970	7970		10.8	3.1906	1		+		9925	18066	5643	5681	9597	9597					0.08977072262086949
ERKERVRKYRR	11	Unmodified	_ERKERVRKYRR_					0	0	0			REV__MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant	REV__MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	788.46728515625	2	788.468764	1574.92297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.711	1	47.711	47.211	48.211	0								0	0	0	0.95731	1	18136	18136		2.4985	2.4985	1		+		9926	10766	5644	5682	9598	9598					0.15850994082575198
ERKHFRSGRIA	11	Unmodified	_ERKHFRSGRIA_					0	0	0		MACC1|p.N411Tfs*23|2|0.37|ENSG00000183742|chr7:20159129-20159129|T/-|frameshift_variant;ENSG00000183742|ENST00000400331|MACC1	MACC1|p.N411Tfs*23|2|0.37|ENSG00000183742|chr7:20159129-20159129|T/-|frameshift_variant	MACC1|p.N411Tfs*23|2|0.37|ENSG00000183742|chr7:20159129-20159129|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	678.8842163085938	2	678.884001	1355.75345	0.47748	0.00032415	-0.55895	-0.00037946	-0.081467	-5.5307E-05	678.8839615331408	40.511	0.20665	40.442	40.313	40.519	-0.069626					5	3	2	0	0	0	0.63066	1	15289	15289		32.037	7.0465	1	30344000			9927	5737	5645	5683	9599	9599					0.0898029780005345
ERKLAARALNP	11	Unmodified	_ERKLAARALNP_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-2|BDP1	REV__nc|ENSG00000145734|A6H8Y1-2|BDP1	MULTI-MSMS	HCT116MG_D190212_S1	1	413.58184814453125	3	413.582444	1237.7255	-0.21663	-8.9593E-05	-0.75976	-0.00031422	-0.97639	-0.00040382	413.5820567768884	51.014	1.4442	51.014	49.905	51.349	0					48	27	2	0	0	0	0.74191	1	19148	19148		0.36667	0.36667	1	18211000	+		9928	12458	5646	5684	9600	9600					0.11614974819940471
ERKREEIKIKQ	11	Unmodified	_ERKREEIKIKQ_					0	0	0		DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;DMD|p.L2185Wfs*4|1|0.05|ENSG00000198947|chrX:31968399-31968399|A/-|frameshift_variant;DMD|p.K2329Sfs*9|1|0.33|ENSG00000198947|chrX:31875300-31875300|T/-|frameshift_variant;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD	DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant	DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	486.2914733886719	3	486.29133	1455.85216	0.26154	0.00012718	0.35851	0.00017434	0.62005	0.00030152	486.2914696122765	22.455	0.20884	22.455	22.324	22.533	0					8	3	3	0	0	0	0.70939	1	7963	7963		18.34	2.8013	1	10683000			9929	690	5647	5685	9601	9601					0.1424685625438542
ERKSLNRRQRL	11	Unmodified	_ERKSLNRRQRL_					0	0	0		ENST00000294623.8_1_1:78444698-78444743:-|nuORF	ENST00000294623.8_1_1:78444698-78444743:-|nuORF	ENST00000294623.8_1_1:78444698-78444743:-|nuORF	MSMS	HCT116MG_D190212_S1	1	728.4346313476562	2	728.43439	1454.85423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.968	1	57.968	57.468	58.468	0								0	0	0	0.94012	1	22317	22317		11.495	3.8858	1				9930	6970	5648	5686	9602	9602					0.14499329782870518
ERKYHLRYYK	10	Unmodified	_ERKYHLRYYK_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	MSMS	HCT116MG_D190212_S1	1	485.9333801269531	3	485.933366	1454.77827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.353	1	11.353	10.853	11.853	0								0	0	0	0.96937	1	3566	3566		0.13989	0.056541	1				9931	9373	5649	5687	9603	9603					0.06906932882725414
ERLAERFAAN	10	Unmodified	_ERLAERFAAN_					0	0	0			REV__ENST00000464620.1_1_1:3388185-3390209:+|nuORF	REV__ENST00000464620.1_1_1:3388185-3390209:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	588.8092041015625	2	588.809636	1175.60472	0.61562	0.00036248	-1.5656	-0.00092185	-0.94999	-0.00055936	588.8088980721174	27.744	0.3121	27.744	27.592	27.904	0					12	5	3	0	0	0	0.73913	1	10094	10094		17.113	5.4726	1	10894000	+		9932	15808	5650	5688	9604	9604					0.023941471064972575
ERLKDYKP	8	Unmodified	_ERLKDYKP_					0	0	0		tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	350.1974792480469	3	350.197708	1047.57129	0.065872	2.3068E-05	-0.34975	-0.00012248	-0.28388	-9.9413E-05	350.197557214001	29.834	0.26681	29.598	29.448	29.715	-0.23655					6	4	2	0	0	0	0.81821	1	10884	10884		6.7232	0	1	4332700			9933	18595	5651	5689	9605	9605					0.04941145334532848
ERLKDYKP	8	Unmodified	_ERLKDYKP_					0	0	0		tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MULTI-MATCH	HCT116MG_D190212_S2	2		3	350.197708	1047.57129	-0.12568	-4.4012E-05	-0.68325	-0.00023927	-0.80893	-0.00028329	350.1974841577402	29.851	0.25827	29.55	29.392	29.65	-0.30095	-0.057555	-0.00025992	NaN	6.7232	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5389700			9934	18595	5651	5689							0.04941145334532848
ERLKDYKP	8	Unmodified	_ERLKDYKP_					0	0	0		tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	tr|U7T3E3|U7T3E3_FUSNUPeptide/nickeltransportsystemsubstrate-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00609PE=3SV=1	MULTI-MATCH	HCT116MG_D190212_S4	4		3	350.197708	1047.57129	-0.077941	-2.7295E-05	-0.60354	-0.00021136	-0.68148	-0.00023865	350.1972864186505	30.032	0.26012	29.675	29.597	29.857	-0.3571	0.067383	-0.00017617	NaN	6.7232	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1908800			9935	18595	5651	5689							0.04941145334532848
ERLLSGLQRLF	11	Unmodified	_ERLLSGLQRLF_					0	0	0			REV__nc|ENSG00000130244|Q17RN3-2|FAM98C	REV__nc|ENSG00000130244|Q17RN3-2|FAM98C	MSMS	HCT116MG_D190212_S2	2	666.3919677734375	2	666.393336	1330.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.272	1	36.144	35.644	36.644	-0.12799								0	0	0	0.9465	1	13559	13559		8.1555	3.2585	1		+		9936	11910	5652	5690	9606	9606					0.11996414651207488
ERLNMCEEWSY	11	Carbamidomethyl (C),Oxidation (M)	_ERLNM(Oxidation (M))C(Carbamidomethyl (C))EEWSY_	ERLNMC(1)EEWSY	ERLNM(1)CEEWSY	ERLNMC(48)EEWSY	ERLNM(48)CEEWSY	0	1	1			REV__ICK|p.A167Gfs*16|1|0.05|ENSG00000112144|chr6:53018493-53018494|-/C|frameshift_variant	REV__ICK|p.A167Gfs*16|1|0.05|ENSG00000112144|chr6:53018493-53018494|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	766.81103515625	2	766.810858	1531.60716	1.0611	0.0008137	-1.0751	-0.00082437	-0.013913	-1.0668E-05	766.8103735421831	36.634	0.207	36.52	36.395	36.602	-0.11479					11	3	4	0	0	0	0.48359	1	13708	13708		47.594	38.211	1	59324000	+		9937	11447	5653	5691	9607	9607	51	152			-0.13737553333021424
ERLNMCEEWSY	11	Carbamidomethyl (C),Oxidation (M)	_ERLNM(Oxidation (M))C(Carbamidomethyl (C))EEWSY_					0	1	1			REV__ICK|p.A167Gfs*16|1|0.05|ENSG00000112144|chr6:53018493-53018494|-/C|frameshift_variant	REV__ICK|p.A167Gfs*16|1|0.05|ENSG00000112144|chr6:53018493-53018494|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	766.810858	1531.60716	0.5277	0.00040464	0.00078199	5.9964E-07	0.52848	0.00040524	766.811256532908	36.836	0.15575	36.535	36.405	36.561	-0.30113	0.007707	0.00053957	NaN	47.594	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10903000	+		9938	11447	5653	5691			51	152			-0.13737553333021424
ERLREQRQRRH	11	Unmodified	_ERLREQRQRRH_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-3|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-3|PHLDB1	MSMS	HCT116MG_D190212_S4	4	782.1097412109375	2	782.437995	1562.86144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.049	1	43.676	43.176	44.176	-0.37373								0	0	0	0.9598	1	16214	16214		1.1933	0	1		+		9939	10548	5654	5692	9608	9608					0.10252062383278826
ERLRPRKRRRN	11	Unmodified	_ERLRPRKRRRN_					0	0	0		ENSG00000133193|ENST00000405159|FAM104A;nc|ENSG00000133193|Q969W3|VCF1	ENSG00000133193|ENST00000405159|FAM104A	ENSG00000133193|ENST00000405159|FAM104A	MULTI-MSMS	HCT116MG_D190212_S1	1	512.985595703125	3	512.985457	1535.93454	0.49039	0.00025156	-0.045316	-2.3246E-05	0.44508	0.00022832	512.985405711093	54.257	2.2994	54.257	53.307	55.606	0					192	44	6	0	0	0	0.74191	1	20696	20696		0.08335	0.010087	1	3298099999.9999995			9940	3233	5655	5693	9609	9609					0.18801235896580692
ERLRPRKRRRN	11	Unmodified	_ERLRPRKRRRN_					0	0	0		ENSG00000133193|ENST00000405159|FAM104A;nc|ENSG00000133193|Q969W3|VCF1	ENSG00000133193|ENST00000405159|FAM104A	ENSG00000133193|ENST00000405159|FAM104A	MULTI-MSMS	HCT116MG_D190212_S2	2	512.9859619140625	3	512.985457	1535.93454	0.23091	0.00011845	0.18221	9.3473E-05	0.41312	0.00021193	512.985476578379	54.986	2.6699	54.798	52.915	55.585	-0.18797					191	51	6	0	0	0	0.74191	1	20561	20561		0.073264	0.073264	1	1183600000			9941	3233	5655	5693	9610	9610					0.18801235896580692
ERLRPRKRRRN	11	Unmodified	_ERLRPRKRRRN_					0	0	0		ENSG00000133193|ENST00000405159|FAM104A;nc|ENSG00000133193|Q969W3|VCF1	ENSG00000133193|ENST00000405159|FAM104A	ENSG00000133193|ENST00000405159|FAM104A	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7731323242188	3	512.985457	1535.93454	0.18818	9.6534E-05	0.16333	8.3784E-05	0.35151	0.00018032	512.9854690807514	55.084	1.6712	54.792	53.517	55.188	-0.2918					78	31	4	0	0	0	0.74191	1	20988	20988		0.073264	0.073264	1	23358000			9942	3233	5655	5693	9611	9611					0.18801235896580692
ERMWLLWQP	9	Unmodified	_ERMWLLWQP_					0	0	0		ENST00000428370.1_3_7:66038415-66041909:-|nuORF	ENST00000428370.1_3_7:66038415-66041909:-|nuORF	ENST00000428370.1_3_7:66038415-66041909:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	419.7054443359375	3	420.218226	1257.63285	0.078002	3.2778E-05	-0.47991	-0.00020166	-0.4019	-0.00016889	420.2179842368774	18.63	0.26021	18.699	18.615	18.875	0.069159					5	4	2	0	0	0	0.26787	1	6364	6364		2.2828	0.3764	1	3469800			9943	7831	5656	5694	9612	9612					0.014337537622168384
ERNAESAIEA	10	Unmodified	_ERNAESAIEA_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-MSMS	HCT116MG_D190212_S4	4	545.262451171875	2	545.262185	1088.50982	0.44287	0.00024148	-0.70387	-0.00038379	-0.261	-0.00014232	545.2620796572041	22.56	0.31168	22.323	22.133	22.445	-0.23758					10	5	3	0	0	0	0.64492	1	7856	7856		24.991	0	1	2792900			9944	1297	5657	5695	9613	9613					-0.03089831155398315
ERNSLDYAK	9	Unmodified	_ERNSLDYAK_					0	0	0		ENST00000560334.5_1_15:79271198-79356973:-|nuORF;ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	548.2755126953125	2	548.275095	1094.53564	0.42257	0.00023168	0.22863	0.00012535	0.65119	0.00035703	548.2752446294495	18.792	0.20847	18.792	18.662	18.871	0					5	3	2	0	0	0	0.16306	1	6486	6486		45.7	7.524	1	5829800			9945	1099	5658	5696	9614	9614					-0.007849369131008643
ERNSLDYAK	9	Unmodified	_ERNSLDYAK_					0	0	0		ENST00000560334.5_1_15:79271198-79356973:-|nuORF;ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	548.275390625	2	548.275095	1094.53564	0.42788	0.0002346	-0.074437	-4.0812E-05	0.35344	0.00019378	548.2750146926134	19.439	0.31208	19.069	18.888	19.2	-0.3695					16	5	4	0	0	0	0.16306	1	6741	6741		45.7	0	1	47428000			9946	1099	5658	5696	9615	9615					-0.007849369131008643
ERQRKRHLKQE	11	Unmodified	_ERQRKRHLKQE_					0	0	0		ASIC2|p.T213Qfs*32|1|0.35|ENSG00000108684|chr17:33111987-33111987|C/-|frameshift_variant	ASIC2|p.T213Qfs*32|1|0.35|ENSG00000108684|chr17:33111987-33111987|C/-|frameshift_variant	ASIC2|p.T213Qfs*32|1|0.35|ENSG00000108684|chr17:33111987-33111987|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	754.1768798828125	2	754.431847	1506.84914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.329	1	32.099	31.599	32.599	-0.23009								0	0	0	0.95636	1	11958	11958		2.9952	0.49676	1				9947	200	5659	5697	9616	9616					0.11599025920281747
ERREEWQGPT	10	Unmodified	_ERREEWQGPT_					0	0	0		ENST00000375370.9_1_13:114286047-114288212:+|nuORF	ENST00000375370.9_1_13:114286047-114288212:+|nuORF	ENST00000375370.9_1_13:114286047-114288212:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	644.3082885742188	2	644.307458	1286.60036	0.41505	0.00026742	-0.50516	-0.00032548	-0.090107	-5.8057E-05	644.3070607587401	18.718	0.2599	18.537	18.407	18.667	-0.18052					7	4	2	0	0	0	0.86339	1	6315	6315		6.7232	2.3939	1	2013000			9948	7509	5660	5698	9617	9617					-0.031473621071199887
ERRMRFYIRH	10	Unmodified	_ERRMRFYIRH_					0	0	0		CACNA1A|p.R481H|1|0.07|ENSG00000141837|chr19:13317225-13317225|C/T|missense_variant	CACNA1A|p.R481H|1|0.07|ENSG00000141837|chr19:13317225-13317225|C/T|missense_variant	CACNA1A|p.R481H|1|0.07|ENSG00000141837|chr19:13317225-13317225|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	732.3934326171875	2	732.393679	1462.7728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.306	1	56	55.5	56.5	-0.30626								0	0	0	0.94551	1	21104	21104		5.7319	2.4505	1				9949	302	5661	5699	9618	9618					0.059929308192749886
ERRRQKRRLNK	11	Unmodified	_ERRRQKRRLNK_					0	0	0			REV__RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant	REV__RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	770.477783203125	2	770.47438	1538.93421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.98	1	51.796	51.296	52.296	-0.18369								0	0	0	0.96003	1	19957	19957		1.0715	0.76443	1		+		9950	12991	5662	5700	9619	9619					0.18629816176712666
ERRRRGRFLTR	11	Unmodified	_ERRRRGRFLTR_					0	0	0			REV__nc|ENSG00000161813|Q71RC2-2|LARP4	REV__nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S2	2	752.448974609375	2	751.947998	1501.88144	0.98348	0.00073953	-0.0013306	-1.0005E-06	0.98215	0.00073853	751.9478377477196	54.973	2.7706	54.785	53.173	55.944	-0.18797					122	53	5	0	0	0	0.74191	1	21009	21009		2.2828	1.9321	1	256330000	+		9951	12858	5663	5701	9620	9620					0.15057858113914335
ERRYVMLRALT	11	Unmodified	_ERRYVMLRALT_					0	0	0			REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant	REV__ADAM11|p.G347Afs*11|1|0.26|ENSG00000073670|chr17:44774337-44774337|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	704.3987426757812	2	704.398096	1406.78164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.323	1	58.153	57.653	58.653	-0.1703								0	0	0	0.95731	1	22538	22538		2.4985	0	1		+		9952	9847	5664	5702	9621	9621					0.09451859665091433
ERRYYRRK	8	Unmodified	_ERRYYRRK_					0	0	0		ENST00000533424.5_1_11:67770773-67771486:-|nuORF;ENST00000530138.3_1_11:67766987-67771573:-|nuORF;UNC93B1|p.A407Pfs*42|1|0.62|ENSG00000110057|chr11:67995755-67995755|C/-|frameshift_variant;ENSG00000110057|ENST00000227471|UNC93B1	ENST00000533424.5_1_11:67770773-67771486:-|nuORF	ENST00000533424.5_1_11:67770773-67771486:-|nuORF	MSMS	HCT116MG_D190212_S1	1	613.4828491210938	2	613.846887	1225.67922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.214	1	59.214	58.714	59.714	0								0	0	0	0.8837	1	22823	22823		0.69038	0.16561	1				9953	2230	5665	5703	9622	9622					0.07540954708497338
ERSLFYSEL	9	Unmodified	_ERSLFYSEL_					0	0	0			REV__TBC1D32|p.K717Nfs*29|1|0.1|ENSG00000146350|chr6:121242207-121242207|T/-|frameshift_variant	REV__TBC1D32|p.K717Nfs*29|1|0.1|ENSG00000146350|chr6:121242207-121242207|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	573.5787963867188	2	572.287671	1142.56079	0.42299	0.00024207	-0.45609	-0.00026101	-0.033099	-1.8942E-05	572.2873168513669	39.482	0.7146	39.404	39.226	39.94	-0.077839					32	13	5	0	0	0	0.45867	1	14888	14888		19.257	0	1	769160000	+		9954	12484	5666	5704	9623	9623					-0.004788821105421448
ERSLSYRY	8	Unmodified	_ERSLSYRY_					0	0	0		sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	sp|F5HHH2|UL142_HCMVMMembraneglycoproteinUL142OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL142PE=1SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.7692260742188	2	537.272355	1072.53016	0.6595	0.00035433	-1.5841	-0.00085108	-0.92457	-0.00049675	537.271411861988	44.905	0.25993	44.82	44.691	44.951	-0.084797					8	4	3	0	0	0	0.31855	1	17072	17072		8.5933	0	1	24634000			9955	18202	5667	5705	9624	9624					-0.003206157049135072
ERSPAIAWM	9	Unmodified	_ERSPAIAWM_					0	0	0			REV__KRT79|p.A496Pfs*43|1|0.44|ENSG00000185640|chr12:52821994-52821994|C/-|frameshift_variant	REV__KRT79|p.A496Pfs*43|1|0.44|ENSG00000185640|chr12:52821994-52821994|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	354.1753845214844	3	354.17966	1059.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.641	1	28.308	27.808	28.808	-0.33356								0	0	0	0.768	1	10308	10308		4.897	1.3005	1		+		9956	16938	5668	5706	9625	9625					-0.01022770088661673
ERSVARPQ	8	Unmodified	_ERSVARPQ_					0	0	0			REV__ZKSCAN2|p.T162S|1|0.62|ENSG00000155592|chr16:25255308-25255308|T/A|missense_variant	REV__ZKSCAN2|p.T162S|1|0.62|ENSG00000155592|chr16:25255308-25255308|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	471.7592468261719	2	471.759415	941.504277	0.2053	9.6855E-05	-0.24871	-0.00011733	-0.043405	-2.0477E-05	471.7593634183489	18.519	0.31241	18.596	18.465	18.778	0.076334					10	5	3	0	0	0	0.19352	1	6316	6316		74.929	14.855	1	6463300	+		9957	12705	5669	5707	9626	9626					0.03118534843474663
ERSVVCLFEA	10	Unmodified	_ERSVVCLFEA_					0	0	0			REV__ENSG00000180901|ENST00000322444|KCTD2	REV__ENSG00000180901|ENST00000322444|KCTD2	MSMS	HCT116MG_D190212_S3	3	576.7894287109375	2	576.789524	1151.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.465	1	38.163	37.663	38.663	-0.30137								0	0	0	0.64819	1	14250	14250		40.239	2.0636	1		+		9958	13674	5670	5708	9627	9627					-0.005225356082974031
ERTATRRNPG	10	Unmodified	_ERTATRRNPG_					0	0	0		ENST00000462306.5_1_2:128051120-128051662:-|nuORF	ENST00000462306.5_1_2:128051120-128051662:-|nuORF	ENST00000462306.5_1_2:128051120-128051662:-|nuORF	MSMS	HCT116MG_D190212_S2	2	386.54248046875	3	386.542649	1156.60612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.493	1	15.166	14.666	15.666	-0.32684								0	0	0	0.92746	1	5151	5151		9.7643	1.9182	1				9959	8065	5671	5709	9628	9628					0.03407781195210191
ERTPFELIEK	10	Unmodified	_ERTPFELIEK_					0	0	0			REV__ENST00000454469.6_1_9:214976-340322:+|nuORF	REV__ENST00000454469.6_1_9:214976-340322:+|nuORF	MSMS	HCT116MG_D190212_S1	1	631.6668701171875	2	631.342978	1260.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.672	1	29.672	29.172	30.172	0								0	0	0	0.91638	1	10853	10853		12.241	2.1667	1		+		9960	10404	5672	5710	9629	9629					0.0514933787769678
ERTTIRFSR	9	Unmodified	_ERTTIRFSR_					0	0	0			REV__ENST00000591437.5_1_17:75196686-75199708:+|nuORF	REV__ENST00000591437.5_1_17:75196686-75199708:+|nuORF	MSMS	HCT116MG_D190212_S2	2	583.323974609375	2	583.325454	1164.63635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.151	1	61.003	60.503	61.503	-0.14852								0	0	0	0.76923	1	23681	23681		3.5965	0.31518	1		+		9961	16692	5673	5711	9630	9630					0.06062139860409843
ERVRTYSGP	9	Unmodified	_ERVRTYSGP_					0	0	0		POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant;nc|ENSG00000124429|Q8WVV4-3|POF1B;ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	POF1B|p.T130Lfs*12|1|0.14|ENSG00000124429|chrX:85359600-85359601|-/AG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7791137695312	2	532.777805	1063.54106	0.40063	0.00021345	0.34035	0.00018133	0.74099	0.00039478	532.777779236776	20.059	0.67707	20.107	19.738	20.416	0.048107					19	12	2	0	0	0	0.45867	1	6769	6769		19.257	2.1441	1	4919500			9962	2845	5674	5712	9631	9631					0.011827866693920441
ERWWRWRRAGW	11	Unmodified	_ERWWRWRRAGW_					0	0	0			REV__ENST00000420484.2_1_9:130950179-130953656:-|nuORF	REV__ENST00000420484.2_1_9:130950179-130953656:-|nuORF	MSMS	HCT116MG_D190212_S1	1	822.92529296875	2	822.923992	1643.83343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.772	1	55.772	55.272	56.272	0								0	0	0	0.96192	1	21425	21425		0.30703	0.30703	1		+		9963	15517	5675	5713	9632	9632					0.03726784193850108
ESAAAAPSPVL	11	Unmodified	_ESAAAAPSPVL_					0	0	0		ENST00000533209.5_1_1:54708906-54792004:-|nuORF	ENST00000533209.5_1_1:54708906-54792004:-|nuORF	ENST00000533209.5_1_1:54708906-54792004:-|nuORF	MSMS	HCT116MG_D190212_S4	4	506.7688293457031	2	506.769114	1011.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.863	1	17.688	17.188	18.188	-0.17501								0	0	0	0.88801	1	5956	5956		21.537	0	1				9964	8644	5676	5714	9633	9633					0.018374463436998667
ESAAAFSSQ	9	Unmodified	_ESAAAFSSQ_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	MULTI-MSMS	HCT116MG_D190212_S2	2	449.2014465332031	2	449.201064	896.387576	0.08827	3.9651E-05	0.27122	0.00012183	0.35949	0.00016148	449.2010977569333	17.823	0.94009	17.467	17.232	18.172	-0.35647					30	17	3	0	0	0	0.090581	1	6098	6098		60.074	10.141	1	7474500			9965	4679	5677	5715	9634	9634					-0.06476248166950427
ESAAAFSSQ	9	Unmodified	_ESAAAFSSQ_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	MULTI-MSMS	HCT116MG_D190212_S3	3	449.2010192871094	2	449.201064	896.387576	-0.21152	-9.5016E-05	0.56602	0.00025426	0.3545	0.00015924	449.20128095400565	17.426	0.67648	17.508	17.273	17.95	0.081358					24	12	2	0	0	0	0.13316	1	5823	5823		51.63	3.284	1	7417500			9966	4679	5677	5715	9635	9635					-0.06476248166950427
ESAAAFSSQ	9	Unmodified	_ESAAAFSSQ_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	MULTI-MSMS	HCT116MG_D190212_S4	4	449.2007751464844	2	449.201064	896.387576	0.028166	1.2652E-05	-0.057704	-2.5921E-05	-0.029538	-1.3269E-05	449.20097492875544	17.592	1.0886	17.421	17.121	18.209	-0.17047					25	20	2	0	0	0	0.061422	1	5801	5801		69.105	16.837	1	3010100			9967	4679	5677	5715	9636	9636					-0.06476248166950427
ESAAPLFPPP	10	Unmodified	_ESAAPLFPPP_					0	0	0			REV__nc|ENSG00000176058|Q4KMQ1-2|TPRN	REV__nc|ENSG00000176058|Q4KMQ1-2|TPRN	MSMS	HCT116MG_D190212_S3	3	513.266845703125	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.867	1	23.805	23.305	24.305	-0.061449								0	0	0	0.75886	1	8448	8448		34.102	1.797	1		+		9968	13534	5678	5716	9637	9637					0.011666516946434058
ESAASSFM	8	Unmodified	_ESAASSFM_					0	0	0			REV__TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	REV__TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	829.3389892578125	1	829.339646	828.332369	0.62707	0.00052005	-0.34076	-0.0002826	0.28631	0.00023745	829.3391650496397	37.598	0.30659	37.495	37.385	37.692	-0.10318					7	5	2	0	0	0	0.23352	1	14109	14109		67.035	10.494	1	53272000	+		9969	14020	5679	5717	9638	9638					-0.08866377959066085
ESACLSFWYHM	11	Unmodified	_ESACLSFWYHM_					0	0	0		TMPRSS15|p.P420S|1|0.07|ENSG00000154646|chr21:18343974-18343974|G/A|missense_variant	TMPRSS15|p.P420S|1|0.07|ENSG00000154646|chr21:18343974-18343974|G/A|missense_variant	TMPRSS15|p.P420S|1|0.07|ENSG00000154646|chr21:18343974-18343974|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	687.286865234375	2	687.286291	1372.55803	0.89424	0.0006146	0.47471	0.00032626	1.3689	0.00094086	687.2865207340324	15.559	0.41695	15.645	15.456	15.873	0.085423					20	7	4	0	0	0	0.74191	1	5099	5099		1.4819	1.0236	1	5532100			9970	18277	5680	5718	9639	9639					-0.11334796831351923
ESAFRKLDELY	11	Unmodified	_ESAFRKLDELY_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF;ENST00000567229.5_1_15:66791747-66793486:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-SECPEP	HCT116MG_D190212_S2	2	686.3527221679688	2	685.851167	1369.68778	0.68435	0.00046936	-0.16581	-0.00011372	0.51854	0.00035564	686.3522634355779	44.802	0.20663	44.717	44.588	44.794	-0.084797					5	3	2	0	0	0	0.23974	1	17052	17052		32.898	4.4033	1	26010000			9971	5331	5681	5719	9640	9640					0.0177241904384573
ESAFSAER	8	Unmodified	_ESAFSAER_					0	0	0		ENST00000553595.5_1_14:68331761-69149671:+|nuORF;nc|ENSG00000182185|O15315-5|RAD51B;nc|ENSG00000182185|O15315-1|RAD51B;ENSG00000182185|ENST00000471583|RAD51B;nc|ENSG00000182185|O15315-4|RAD51B;nc|ENSG00000182185|O15315|RAD51B	ENST00000553595.5_1_14:68331761-69149671:+|nuORF	ENST00000553595.5_1_14:68331761-69149671:+|nuORF	MSMS	HCT116MG_D190212_S3	3	448.7088317871094	2	448.709057	895.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.464	1	17.546	17.046	18.046	0.081358								0	0	0	0.65638	1	5869	5869		34.102	1.797	1				9972	5660	5682	5720	9641	9641					-0.04832541930045409
ESAFSAER	8	Unmodified	_ESAFSAER_					0	0	0		ENST00000553595.5_1_14:68331761-69149671:+|nuORF;nc|ENSG00000182185|O15315-5|RAD51B;nc|ENSG00000182185|O15315-1|RAD51B;ENSG00000182185|ENST00000471583|RAD51B;nc|ENSG00000182185|O15315-4|RAD51B;nc|ENSG00000182185|O15315|RAD51B	ENST00000553595.5_1_14:68331761-69149671:+|nuORF	ENST00000553595.5_1_14:68331761-69149671:+|nuORF	MSMS	HCT116MG_D190212_S4	4	448.7090759277344	2	448.709057	895.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.613	1	17.442	16.942	17.942	-0.17047								0	0	0	0.5922	1	5855	5855		37.974	7.3375	1				9973	5660	5682	5720	9642	9642					-0.04832541930045409
ESAGLERPG	9	Unmodified	_ESAGLERPG_					0	0	0			REV__ENST00000584250.1_2_18:21594410-21594599:+|nuORF	REV__ENST00000584250.1_2_18:21594410-21594599:+|nuORF	MSMS	HCT116MG_D190212_S1	1	458.2286376953125	2	458.230156	914.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.954	1	35.954	35.454	36.454	0								0	0	0	0.76603	1	13391	13391		14.838	2.5976	1		+		9974	16641	5683	5721	9643	9643					-0.0148856652166387
ESAGLQGSFS	10	Unmodified	_ESAGLQGSFS_					0	0	0		ENST00000379644.8_2_8:43057215-43057305:+|nuORF	ENST00000379644.8_2_8:43057215-43057305:+|nuORF	ENST00000379644.8_2_8:43057215-43057305:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	982.4471435546875	1	982.447616	981.44034	0.95535	0.00093859	0.8746	0.00085925	1.83	0.0017978	982.4469475637519	27.551	0.31218	27.363	27.153	27.465	-0.18847					12	5	4	0	0	0	0.051175	1	9952	9952		86.332	0.69033	1	4509900			9975	7556	5684	5722	9644	9644					-0.0511229010412535
ESAGLQGSFS	10	Unmodified	_ESAGLQGSFS_					0	0	0		ENST00000379644.8_2_8:43057215-43057305:+|nuORF	ENST00000379644.8_2_8:43057215-43057305:+|nuORF	ENST00000379644.8_2_8:43057215-43057305:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	982.447616	981.44034	0.86324	0.00084809	0.96933	0.00095232	1.8326	0.0018004	982.4482132625371	27.578	0.20776	27.236	27.139	27.347	-0.34201	-0.063412	1.0217E-05	NaN	86.332	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7621600			9976	7556	5684	5722							-0.0511229010412535
ESAGPVTGPV	10	Unmodified	_ESAGPVTGPV_					0	0	0			REV__ENSG00000130876|ENST00000253188|SLC7A10	REV__ENSG00000130876|ENST00000253188|SLC7A10	MULTI-MSMS	HCT116MG_D190212_S2	2	913.4598999023438	1	913.462538	912.455261	0.3468	0.00031679	-1.8512	-0.001691	-1.5044	-0.0013742	913.4608811199303	30.097	0.30953	29.812	29.615	29.925	-0.28453					8	5	2	0	0	0	0.54141	1	11052	11052		32.305	0	1	19265000	+		9977	11944	5685	5723	9645	9645					-0.004467982361461509
ESAGPVTGPV	10	Unmodified	_ESAGPVTGPV_					0	0	0			REV__ENSG00000130876|ENST00000253188|SLC7A10	REV__ENSG00000130876|ENST00000253188|SLC7A10	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	913.462538	912.455261	0.3468	0.00031679	-1.8512	-0.001691	-1.5044	-0.0013742	913.4608811199303	30.097	0.30953	29.812	29.615	29.925	-0.28453	-0.073114	-0.000291	NaN	32.305	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19265000	+		9978	11944	5685	5723							-0.004467982361461509
ESAGPVTGPV	10	Unmodified	_ESAGPVTGPV_					0	0	0			REV__ENSG00000130876|ENST00000253188|SLC7A10	REV__ENSG00000130876|ENST00000253188|SLC7A10	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	913.462538	912.455261	0.80319	0.00073368	-1.5319	-0.0013994	-0.72875	-0.00066568	913.4609994698544	30.137	0.31527	29.887	29.702	30.017	-0.24946	0.0019173	6.7472E-07	NaN	32.305	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21905000	+		9979	11944	5685	5723							-0.004467982361461509
ESAGPVTGPV	10	Unmodified	_ESAGPVTGPV_					0	0	0			REV__ENSG00000130876|ENST00000253188|SLC7A10	REV__ENSG00000130876|ENST00000253188|SLC7A10	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	913.462538	912.455261	0.68881	0.00062921	-1.3138	-0.0012001	-0.625	-0.00057092	913.461315744311	30.314	0.2501	29.956	29.753	30.003	-0.35711	0.071196	0.00019992	NaN	32.305	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11589000	+		9980	11944	5685	5723							-0.004467982361461509
ESAGQNHES	9	Unmodified	_ESAGQNHES_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	MULTI-SECPEP	HCT116MG_D190212_S3	3	479.672607421875	2	479.696677	957.378802	-0.066926	-3.2104E-05	-0.37145	-0.00017818	-0.43837	-0.00021029	479.6963585495715	17.355	0.83243	17.436	17.273	18.106	0.081358					25	15	2	0	0	0	0.25723	1	5840	5840		7.9102	7.9102	1	2733900	+		9981	17094	5686	5724	9646	9646					-0.10159221803428409
ESAHTDGIVRQ	11	Unmodified	_ESAHTDGIVRQ_					0	0	0			REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	606.8023681640625	2	606.802008	1211.58946	0.99641	0.00060463	-0.41649	-0.00025273	0.57992	0.0003519	606.8017039419582	28.369	0.67585	28.038	27.7	28.376	-0.33138					18	12	2	0	0	0	0.7298	1	10208	10208		10.8	0.64894	1	5045400	+		9982	12676	5687	5725	9647	9647					-0.007867644813813968
ESAHTDGIVRQ	11	Unmodified	_ESAHTDGIVRQ_					0	0	0			REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	606.802008	1211.58946	0.50488	0.00030636	-0.78307	-0.00047517	-0.27819	-0.00016881	606.8011277216797	28.461	0.52189	28.255	27.811	28.333	-0.20593	0.10848	-0.00041776	NaN	10.8	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6508300	+		9983	12676	5687	5725							-0.007867644813813968
ESAHTDGIVRQ	11	Unmodified	_ESAHTDGIVRQ_					0	0	0			REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	606.802008	1211.58946	0.99641	0.00060463	-0.41649	-0.00025273	0.57992	0.0003519	606.8017039419582	28.369	0.67585	28.038	27.7	28.376	-0.33138	-0.10848	2.712E-05	NaN	10.8	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5045400	+		9984	12676	5687	5725							-0.007867644813813968
ESALAGFVQG	10	Unmodified	_ESALAGFVQG_					0	0	0			REV__ENST00000521864.1_1_8:107752648-107754575:+|nuORF	REV__ENST00000521864.1_1_8:107752648-107754575:+|nuORF	MSMS	HCT116MG_D190212_S3	3	489.7503356933594	2	489.748182	977.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.105	1	33.81	33.31	34.31	-0.29419								0	0	0	0.7978	1	12541	12541		29.082	6.3453	1		+		9985	13025	5688	5726	9648	9648					-0.007831093447975945
ESAPAPPPPP	10	Unmodified	_ESAPAPPPPP_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MSMS	HCT116MG_D190212_S2	2	479.78253173828125	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.286	1	21.901	21.401	22.401	-0.3852								0	0	0	0.85468	1	7887	7887		21.747	0	1		+		9986	11840	5689	5727	9649	9649					-0.004902078564896328
ESAPAPPPPP	10	Unmodified	_ESAPAPPPPP_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	HCT116MG_D190212_S4	4	480.2452087402344	2	480.245275	958.475997	0.34366	0.00016504	-1.121	-0.00053834	-0.7773	-0.0003733	480.24516450532536	26.976	0.77913	26.664	26.327	27.106	-0.3114					24	14	2	0	0	0	0.43205	1	9586	9586		39.957	0	1	4486300	+		9987	11840	5689	5727	9650	9650					-0.004902078564896328
ESAPPSHT	8	Unmodified	_ESAPPSHT_					0	0	0		AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant;ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3	AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	412.8712463378906	2	413.1905	824.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.016	1	17.659	17.159	18.159	-0.35647								0	0	0	0.74658	1	6167	6167		26.884	5.137	1				9988	70	5690	5728	9651	9651					-0.0527621347580407
ESAPPSHT	8	Unmodified	_ESAPPSHT_					0	0	0		AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant;ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3	AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	413.1904602050781	2	413.1905	824.366446	-0.23779	-9.8254E-05	0.33635	0.00013897	0.098552	4.0721E-05	413.190537526142	17.358	1.0924	17.439	17.065	18.158	0.081358					23	20	2	0	0	0	0.3916	1	5846	5846		50.855	3.1063	1	2322700			9989	70	5690	5728	9652	9652					-0.0527621347580407
ESAQKILYY	9	Unmodified	_ESAQKILYY_					0	0	0		ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	MULTI-SECPEP	HCT116MG_D190212_S2	2	558.2188720703125	2	557.792589	1113.57063	0.3785	0.00021112	-0.20195	-0.00011264	0.17655	9.8478E-05	557.7923797391	40.185	0.26047	40.112	39.945	40.206	-0.072838					8	4	3	0	0	0	0.20548	1	15099	15099		20.415	0	1	15150000			9990	3546	5691	5729	9653	9653					0.01838305894852965
ESAQREQEAAQ	11	Unmodified	_ESAQREQEAAQ_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MSMS	HCT116MG_D190212_S2	2	623.7890014648438	2	623.786555	1245.55856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.837	1	30.57	30.07	31.07	-0.26704								0	0	0	0.84388	1	11353	11353		27.223	5.6863	1		+		9991	14126	5692	5730	9654	9654					-0.05439962586251568
ESASWEEME	9	Unmodified	_ESASWEEME_					0	0	0			REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant	REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	549.2622680664062	2	549.208229	1096.40191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.144	1	36.843	36.343	37.343	-0.30137								0	0	0	0.64498	1	13749	13749		21.747	4.6338	1		+		9992	17039	5693	5731	9655	9655					-0.14243963800959136
ESCEVLPWMW	10	Unmodified	_ESCEVLPWMW_					0	0	0		ENST00000349215.7_1_11:18339453-18343686:-|nuORF;ENST00000396253.7_1_11:18333561-18343686:-|nuORF	ENST00000349215.7_1_11:18339453-18343686:-|nuORF	ENST00000349215.7_1_11:18339453-18343686:-|nuORF	MSMS	HCT116MG_D190212_S1	1	640.2791137695312	2	640.277934	1278.54132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.717	1	20.717	20.217	21.217	0								0	0	0	0.95351	1	7256	7256		3.9444	0	1				9993	7272	5694	5732	9656	9656					-0.08681297717316738
ESCHEPWWAC	10	Unmodified	_ESCHEPWWAC_					0	0	0			REV__nc|ENSG00000231690|Q9H8X3|LINC00574	REV__nc|ENSG00000231690|Q9H8X3|LINC00574	MSMS	HCT116MG_D190212_S4	4	624.236328125	2	624.234058	1246.45356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.019	1	14.858	14.358	15.358	-0.16089								0	0	0	0.96291	1	4807	4807		1.8442	0.19162	1		+		9994	15519	5695	5733	9657	9657					-0.15980498588032788
ESCNQTCSCQC	11	Unmodified	_ESCNQTCSCQC_					0	0	0		sp|P16811|IR13_HCMVAUncharacterizedproteinIRL13OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	sp|P16811|IR13_HCMVAUncharacterizedproteinIRL13OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	sp|P16811|IR13_HCMVAUncharacterizedproteinIRL13OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	603.1864624023438	2	603.188133	1204.36171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.079	1	43.772	43.272	44.272	-0.30721								0	0	0	0.95954	1	16467	16467		1.3295	0.63916	1				9995	18217	5696	5734	9658	9658					-0.23229293059057454
ESCNRCCPG	9	Unmodified	_ESCNRCCPG_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:7043201-7117719:-|nuORF;LAMA1|p.N496Tfs*27|1|0.19|ENSG00000101680|chr18:7038886-7038886|T/-|frameshift_variant;LAMA1|p.Y1218Tfs*20|1|0.24|ENSG00000101680|chr18:7011335-7011335|A/-|frameshift_variant;LAMA1|p.D1200Tfs*38|1|0.14|ENSG00000101680|chr18:7011390-7011390|G/-|frameshift_variant	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-MSMS	HCT116MG_D190212_S4	4	484.67230224609375	2	484.672779	967.331006	-0.23627	-0.00011451	0.22407	0.0001086	-0.012192	-5.9092E-06	484.67302438101234	17.556	0.77928	17.385	17.121	17.9	-0.17047					28	14	3	0	0	0	0.51829	2	5815	5815;5856		15.847	6.4997	1	2707700			9996	1803	5697	5735	9659;9660	9659					-0.1539665859112347
ESCTGGMIAS	10	Unmodified	_ESCTGGMIAS_					0	0	0		tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	tr|U7T1G7|U7T1G7_FUSNUCinA-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00638PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	478.1964111328125	2	478.19661	954.378667	0.47563	0.00022745	-0.16088	-7.6931E-05	0.31476	0.00015052	478.1963500821075	27.651	0.19815	27.33	27.2	27.398	-0.32157					5	3	2	0	0	0	0.76634	1	9933	9933		14.838	3.198	1	2379200			9997	18557	5698	5736	9661	9661					-0.10034681119270772
ESCWQERQQMQ	11	Unmodified	_ESCWQERQQMQ_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MULTI-MSMS	HCT116MG_D190212_S1	1	726.8036499023438	2	726.803368	1451.59218	0.73624	0.0005351	-0.42693	-0.00031029	0.30931	0.00022481	726.8030158931249	18.473	0.20825	18.473	18.35	18.558	0					7	3	3	0	0	0	0.73844	1	6362	6362		7.609	2.3121	1	4156700	+		9998	11473	5699	5737	9662	9662					-0.11555000410407956
ESDAKQSLS	9	Unmodified	_ESDAKQSLS_					0	0	0			REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant	REV__SRGAP3|p.N833Tfs*18|1|0.3|ENSG00000196220|chr3:8992966-8992966|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	482.7330017089844	2	482.732729	963.450904	0.12617	6.0908E-05	0.56927	0.00027481	0.69545	0.00033572	482.732936492056	18.547	0.26039	18.547	18.402	18.662	0					7	4	2	0	0	0	0.28073	1	6410	6410		32.786	2.9451	1	1666100	+		9999	14013	5700	5738	9663	9663					-0.032283074497058806
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MSMS	HCT116MG_D190212_S1	1	637.7932739257812	2	637.793652	1273.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.426	1	40.426	39.926	40.926	0								0	0	0	0.065026	1	15194	15194		90.135	50.178	1				10000	3952	5701	5739	9664	9664					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	637.7937622070312	2	637.793652	1273.57275	0.63053	0.00040215	-0.1443	-9.2037E-05	0.48623	0.00031011	637.7934901409546	40.355	0.25919	40.283	40.154	40.413	-0.072842					17	4	5	0	0	0	1.0015E-10	1	15220	15220		222.22	178.44	1	158290000			10001	3952	5701	5739	9665	9665					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	425.8660888671875	3	425.531527	1273.57275	0.22282	9.4818E-05	0.26337	0.00011207	0.48619	0.00020689	425.5315921372326	40.356	0.41459	40.284	40.102	40.516	-0.072838					10	7	2	0	0	0	0.24695	1	15222	15222		42.068	23.695	1	74069000			10002	3952	5701	5739	9666	9666					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	637.7930908203125	2	637.793652	1273.57275	0.60505	0.0003859	-0.48381	-0.00030857	0.12124	7.7329E-05	637.7932236266832	40.639	0.36457	40.337	40.163	40.528	-0.30161					15	6	3	0	0	0	1.2126E-06	1	15081	15081		208.35	162.65	1	34408000			10003	3952	5701	5739	9667	9667					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	425.531494140625	3	425.531527	1273.57275	0.20232	8.6092E-05	-0.26819	-0.00011412	-0.065869	-2.8029E-05	425.53139992265636	40.647	0.36457	40.345	40.163	40.528	-0.30161					10	6	2	0	0	0	0.28966	1	15099	15099		38.559	27.494	1	16027000			10004	3952	5701	5739	9668	9668					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	HCT116MG_D190212_S4	4	637.7932739257812	2	637.793652	1273.57275	0.46574	0.00029705	-0.8377	-0.00053428	-0.37196	-0.00023724	637.793002913617	40.793	0.2358	40.414	40.286	40.522	-0.37828					12	4	4	0	0	0	0.017942	1	14973	14973		125.04	90.106	1	10187000			10005	3952	5701	5739	9669	9669					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	HCT116MG_D190212_S4	4	425.5312805175781	3	425.531527	1273.57275	0.20786	8.8452E-05	-0.55044	-0.00023423	-0.34257	-0.00014578	425.5314008567312	40.76	0.39131	40.382	40.182	40.573	-0.37828					14	7	3	0	0	0	0.54524	1	14981	14981		23.016	15.914	1	2915300			10006	3952	5701	5739	9670	9670					-0.053092653673502355
ESDGKSRWFY	10	Unmodified	_ESDGKSRWFY_					0	0	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MATCH	HCT116MG_D190212_S1	1		3	425.531527	1273.57275	-0.25333	-0.0001078	-0.16202	-6.8945E-05	-0.41535	-0.00017674	425.8658515529999	40.358	0.20716	40.358	40.28	40.487	0	0.015477	-0.00019118	NaN	42.068	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6831600			10007	3952	5701	5739							-0.053092653673502355
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S1	1	541.7589111328125	2	541.759278	1081.504	0.42167	0.00022844	-0.76335	-0.00041355	-0.34168	-0.00018511	541.7587134407365	29.902	0.25983	29.902	29.685	29.945	0					7	4	2	0	0	0	0.023778	1	10961	10961		92.653	46.632	1	10788000			10008	1226	5702	5740	9671	9671					-0.033489296670495605
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7598266601562	2	541.759278	1081.504	0.14851	8.0456E-05	0.20737	0.00011234	0.35587	0.0001928	541.7594666141331	30.19	0.30929	29.905	29.77	30.079	-0.28453					10	5	3	0	0	0	0.0035147	1	11093	11093		168.66	79.755	1	72751000			10009	1226	5702	5740	9672	9672					-0.033489296670495605
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7595825195312	2	541.759278	1081.504	0.44338	0.0002402	-0.14142	-7.6615E-05	0.30196	0.00016359	541.7590403582078	30.318	0.26121	30.068	29.913	30.174	-0.24946					13	7	3	0	0	0	0.003706	1	11043	11043		155.03	76.877	1	24491000			10010	1226	5702	5740	9673	9673					-0.033489296670495605
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MSMS	HCT116MG_D190212_S4	4	541.7590942382812	2	541.759278	1081.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.406	1	30.049	29.549	30.549	-0.3571								0	0	0	5.6938E-05	1	11019	11019		142.08	73.999	1				10011	1226	5702	5740	9674	9674					-0.033489296670495605
ESDLDYIQY	9	Unmodified	_ESDLDYIQY_					0	0	0		ENST00000437036.6_1_17:57189640-57232487:-|nuORF;ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF;SKA2|p.K91Nfs*13|1|0.07|ENSG00000182628|chr17:59119343-59119343|T/-|frameshift_variant	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	573.2536010742188	2	573.253494	1144.49243	0.42561	0.00024398	0.05355	3.0697E-05	0.47916	0.00027468	573.2534949975438	47.19	0.36276	46.876	46.698	47.061	-0.31405					15	6	3	0	0	0	0.019399	1	17709	17709		97.075	64.769	1	16297000			10012	5680	5703	5741	9675	9675					-0.07403171481041682
ESDLDYIQY	9	Unmodified	_ESDLDYIQY_					0	0	0		ENST00000437036.6_1_17:57189640-57232487:-|nuORF;ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF;SKA2|p.K91Nfs*13|1|0.07|ENSG00000182628|chr17:59119343-59119343|T/-|frameshift_variant	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1145.5006103515625	1	1145.49971	1144.49243	0.40343	0.00046213	-0.14765	-0.00016913	0.25578	0.00029299	1145.4995303962253	47.183	0.20822	46.869	46.75	46.959	-0.31405					5	3	2	0	0	0	0.031005	1	17732	17732		85.357	51.254	1	3959200			10013	5680	5703	5741	9676	9676					-0.07403171481041682
ESDLDYIQY	9	Unmodified	_ESDLDYIQY_					0	0	0		ENST00000437036.6_1_17:57189640-57232487:-|nuORF;ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF;SKA2|p.K91Nfs*13|1|0.07|ENSG00000182628|chr17:59119343-59119343|T/-|frameshift_variant	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	ENST00000437036.6_1_17:57189640-57232487:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	573.2540893554688	2	573.253494	1144.49243	0.68144	0.00039064	-0.25968	-0.00014886	0.42176	0.00024178	573.2533178395635	47.257	0.19912	46.887	46.744	46.944	-0.37038					8	3	3	0	0	0	0.031005	1	17477	17477		85.357	58.473	1	11519000			10014	5680	5703	5741	9677	9677					-0.07403171481041682
ESDLHEGGDG	10	Unmodified	_ESDLHEGGDG_					0	0	0			REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF	REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF	MSMS	HCT116MG_D190212_S1	1	507.78240966796875	2	508.201793	1014.38903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.045	1	25.045	24.545	25.545	0								0	0	0	0.92917	1	8992	8992		9.3831	0.035688	1		+		10015	16504	5704	5742	9678	9678					-0.11758658868825478
ESDLKLVQ	8	Unmodified	_ESDLKLVQ_					0	0	0			REV__ENSG00000189132|ENST00000329357|FAM47B	REV__ENSG00000189132|ENST00000329357|FAM47B	MSMS	HCT116MG_D190212_S3	3	466.2583312988281	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.507	1	33.217	32.717	33.717	-0.29013								0	0	0	0.87079	1	12300	12300		16.942	6.1184	1		+		10016	13991	5705	5743	9679	9679					0.03418061315005616
ESDLPPMPGEA	11	Unmodified	_ESDLPPMPGEA_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10;DNAH10|p.P1206Lfs*12|1|0.08|ENSG00000197653|chr12:123819219-123819219|C/-|frameshift_variant;DNAH10|p.E1360*|1|0.18|ENSG00000197653|chr12:123830579-123830580|-/T|frameshift_variant;DNAH10|p.K1737Nfs*15|2|0.42|ENSG00000197653|chr12:123845799-123845799|A/-|frameshift_variant;DNAH10|p.L299Nfs*4|1|0.07|ENSG00000197653|chr12:123784024-123784025|-/AA|frameshift_variant;DNAH10|p.P300Sfs*22|1|0.06|ENSG00000197653|chr12:123784026-123784027|-/CTCATCA|frameshift_variant;DNAH10|p.D498Tfs*15|1|0.18|ENSG00000197653|chr12:123789977-123789977|G/-|frameshift_variant;DNAH10|p.M516Wfs*4|1|0.11|ENSG00000197653|chr12:123790030-123790030|C/-|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	HCT116MG_D190212_S3	3	571.25390625	2	571.755346	1141.49614	0.61862	0.0003537	0.071912	4.1116E-05	0.69054	0.00039482	571.7555362656452	29.711	0.31552	29.474	29.239	29.555	-0.23655					8	5	2	0	0	0	0.34807	1	10810	10810		22.736	5.6234	1	9721800			10017	6164	5706	5744	9680	9680					-0.06894824978803626
ESDPAYQQY	9	Unmodified	_ESDPAYQQY_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	HCT116MG_D190212_S3	3	550.73046875	2	550.730186	1099.44582	0.54255	0.0002988	-0.042835	-2.359E-05	0.49972	0.00027521	550.7300908938813	29.365	0.41692	29.143	28.942	29.359	-0.22195					14	7	3	0	0	0	0.012168	1	10662	10662		108	58.064	1	10716000			10018	4260	5707	5745	9681	9681					-0.09992611312327426
ESDPAYQQY	9	Unmodified	_ESDPAYQQY_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	HCT116MG_D190212_S3	3	1100.4530029296875	1	1100.4531	1099.44582	0.51482	0.00056654	-0.17589	-0.00019356	0.33893	0.00037298	1100.4527646959582	29.36	0.31248	29.138	28.942	29.254	-0.22196					9	5	2	0	0	0	0.0051486	1	10665	10665		136.33	84.065	1	7446400			10019	4260	5707	5745	9682	9682					-0.09992611312327426
ESDPAYQQY	9	Unmodified	_ESDPAYQQY_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MSMS	HCT116MG_D190212_S4	4	550.7308959960938	2	550.730186	1099.44582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.486	1	29.137	28.637	29.637	-0.34921								0	0	0	0.1947	1	10650	10650		47.749	26.212	1				10020	4260	5707	5745	9683	9683					-0.09992611312327426
ESDPAYQQY	9	Unmodified	_ESDPAYQQY_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MATCH	HCT116MG_D190212_S2	2		2	550.730186	1099.44582	0.45962	0.00025313	0.019458	1.0716E-05	0.47908	0.00026384	551.2318995072857	29.233	0.20361	28.917	28.812	29.015	-0.31613	-0.11314	6.377E-05	NaN	108	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10284000			10021	4260	5707	5745							-0.09992611312327426
ESDPPCCLVTY	11	2 Carbamidomethyl (C)	_ESDPPC(Carbamidomethyl (C))C(Carbamidomethyl (C))LVTY_	ESDPPC(1)C(1)LVTY		ESDPPC(50)C(50)LVTY		0	2	0			REV__nc|ENSG00000108813|Q92988-3|DLX4	REV__nc|ENSG00000108813|Q92988-3|DLX4	MULTI-MSMS	HCT116MG_D190212_S1	1	670.7793579101562	2	670.778496	1339.54244	0.68024	0.00045629	-0.44031	-0.00029535	0.23993	0.00016094	670.7782577396143	25.535	0.31313	25.535	25.405	25.718	0					7	5	2	0	0	0	0.45729	1	9217	9217		49.933	7.6205	1	9678100	+		10022	17104	5708	5746	9684	9684	63;64				-0.11375128139025037
ESDPPCCLVTY	11	2 Carbamidomethyl (C)	_ESDPPC(Carbamidomethyl (C))C(Carbamidomethyl (C))LVTY_	ESDPPC(1)C(1)LVTY		ESDPPC(50)C(50)LVTY		0	2	0			REV__nc|ENSG00000108813|Q92988-3|DLX4	REV__nc|ENSG00000108813|Q92988-3|DLX4	MULTI-MSMS	HCT116MG_D190212_S2	2	670.7789916992188	2	670.778496	1339.54244	0.47988	0.0003219	0.54064	0.00036265	1.0205	0.00068454	670.7787438945887	25.945	0.41618	25.576	25.394	25.81	-0.36914					17	7	4	0	0	0	0.45729	1	9371	9371		49.933	19.296	1	83421000	+		10023	17104	5708	5746	9685	9685	63;64				-0.11375128139025037
ESDPPCCLVTY	11	2 Carbamidomethyl (C)	_ESDPPC(Carbamidomethyl (C))C(Carbamidomethyl (C))LVTY_					0	2	0			REV__nc|ENSG00000108813|Q92988-3|DLX4	REV__nc|ENSG00000108813|Q92988-3|DLX4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	670.778496	1339.54244	0.68024	0.00045629	-0.44031	-0.00029535	0.23993	0.00016094	670.7782577396143	25.535	0.31313	25.535	25.405	25.718	0	-0.020394	-0.0012509	NaN	49.933	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9678100	+		10024	17104	5708	5746			63;64				-0.11375128139025037
ESDPPCCLVTY	11	2 Carbamidomethyl (C)	_ESDPPC(Carbamidomethyl (C))C(Carbamidomethyl (C))LVTY_					0	2	0			REV__nc|ENSG00000108813|Q92988-3|DLX4	REV__nc|ENSG00000108813|Q92988-3|DLX4	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	670.778496	1339.54244	0.47988	0.0003219	0.54064	0.00036265	1.0205	0.00068454	670.7787438945887	25.945	0.41618	25.576	25.394	25.81	-0.36914	0.020394	6.5113E-05	NaN	49.933	17	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83421000	+		10025	17104	5708	5746			63;64				-0.11375128139025037
ESDSRQIFY	9	Unmodified	_ESDSRQIFY_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	HCT116MG_D190212_S1	1	572.7661743164062	2	572.767103	1143.51965	-0.48735	-0.00027914	-0.23362	-0.00013381	-0.72098	-0.00041295	572.7669348289808	38.306	0.26065	38.306	38.175	38.436	0					9	4	3	0	0	0	0.064006	1	14344	14344		67.838	33.436	1	23460000			10026	3920	5709	5747	9686	9686					-0.046366431500018734
ESDSRQIFY	9	Unmodified	_ESDSRQIFY_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	HCT116MG_D190212_S2	2	573.2682495117188	2	572.767103	1143.51965	0.29732	0.0001703	0.067489	3.8655E-05	0.36481	0.00020895	572.76709397116	38.384	0.36846	38.291	38.115	38.483	-0.093006					17	6	4	0	0	0	0.030039	1	14410	14410		86.332	57.25	1	94007000			10027	3920	5709	5747	9687	9687					-0.046366431500018734
ESDSRQIFY	9	Unmodified	_ESDSRQIFY_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	HCT116MG_D190212_S3	3	572.7672119140625	2	572.767103	1143.51965	0.33661	0.0001928	0.090574	5.1878E-05	0.42719	0.00024468	572.7671035291401	38.627	0.41634	38.326	38.144	38.561	-0.30137					19	7	3	0	0	0	0.045679	1	14299	14299		76.825	49.196	1	67365000			10028	3920	5709	5747	9688	9688					-0.046366431500018734
ESDSRQIFY	9	Unmodified	_ESDSRQIFY_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	HCT116MG_D190212_S4	4	572.7672729492188	2	572.767103	1143.51965	0.44317	0.00025383	-0.011375	-6.5152E-06	0.43179	0.00024732	572.7669899706336	38.779	0.45286	38.397	38.187	38.64	-0.38163					17	8	3	0	0	0	0.064006	1	14214	14214		67.838	46.092	1	21287000			10029	3920	5709	5747	9689	9689					-0.046366431500018734
ESDSRQIFYFL	11	Unmodified	_ESDSRQIFYFL_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MSMS	HCT116MG_D190212_S1	1	702.845703125	2	702.843342	1403.67213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.661	1	28.661	28.161	29.161	0								0	0	0	0.94284	1	10447	10447		10.074	3.8681	1				10030	3920	5710	5748	9690	9690					-0.013558674732394138
ESDSVLFSL	9	Unmodified	_ESDSVLFSL_					0	0	0		ENST00000263056.5_1_10:30726187-30726295:+|nuORF	ENST00000263056.5_1_10:30726187-30726295:+|nuORF	ENST00000263056.5_1_10:30726187-30726295:+|nuORF	MSMS	HCT116MG_D190212_S3	3	498.7474365234375	2	498.747847	995.481142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.398	1	49.082	48.582	49.582	-0.31596								0	0	0	0.76575	1	18601	18601		15.847	1.2655	1				10031	6874	5711	5749	9691	9691					-0.016779487845269614
ESDVVGRIFN	10	Unmodified	_ESDVVGRIFN_					0	0	0			REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF	REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF	MSMS	HCT116MG_D190212_S1	1	379.197509765625	3	379.196256	1134.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.168	1	33.168	32.668	33.668	0								0	0	0	0.92917	1	12265	12265		5.4027	0.99656	1		+		10032	15252	5712	5750	9692	9692					0.005036361210159157
ESEAKKLA	8	Unmodified	_ESEAKKLA_					0	0	0		CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350;CEP350|p.K1725Nfs*24|1|0.43|ENSG00000135837|chr1:180053928-180053928|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	875.4841918945312	1	875.483273	874.475997	0.8294	0.00072612	0.42215	0.00036959	1.2515	0.0010957	875.4834111362217	42.383	0.311	42.313	42.066	42.377	-0.069984					6	5	2	0	0	0	0.78216	1	16043	16043		13.508	2.3934	1	15130000			10033	409	5713	5751	9693	9693					0.033737921435204044
ESEDPDYYQY	10	Unmodified	_ESEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S1	1	654.7484741210938	2	654.748773	1307.48299	0.65872	0.00043129	0.083002	5.4346E-05	0.74172	0.00048564	654.7486525995719	36.371	0.21312	36.371	36.257	36.47	0					6	3	2	0	0	0	0.23641	1	13575	13575		56.177	33.441	1	7321300			10034	6638	5714	5752	9694	9694					-0.158449845572477
ESEDPDYYQY	10	Unmodified	_ESEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S2	2	654.7484741210938	2	654.748773	1307.48299	0.70745	0.0004632	-0.156	-0.00010214	0.55144	0.00036106	655.2500971171414	36.433	0.46613	36.305	36.122	36.589	-0.12799					16	8	3	0	0	0	0.020806	1	13627	13627		118.89	82.768	1	59807000			10035	6638	5714	5752	9695	9695					-0.158449845572477
ESEDPDYYQY	10	Unmodified	_ESEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S2	2	1308.4891357421875	1	1308.49027	1307.48299	0.75077	0.00098238	-0.54152	-0.00070858	0.20925	0.0002738	1308.4895630696653	36.466	0.25962	36.338	36.174	36.434	-0.12799					8	4	2	0	0	0	0.033024	1	13642	13642		99.799	70.717	1	20664000			10036	6638	5714	5752	9696	9696					-0.158449845572477
ESEDPDYYQY	10	Unmodified	_ESEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S3	3	654.749267578125	2	654.748773	1307.48299	0.53774	0.00035208	0.16117	0.00010552	0.6989	0.00045761	654.7488093774753	36.628	0.6244	36.327	36.093	36.717	-0.30113					30	11	4	0	0	0	0.015316	1	13523	13523		131.27	98.962	1	55724000			10037	6638	5714	5752	9697	9697					-0.158449845572477
ESEDPDYYQY	10	Unmodified	_ESEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S3	3	1308.4918212890625	1	1308.49027	1307.48299	0.72332	0.00094646	-0.11523	-0.00015078	0.60809	0.00079568	1308.4901287359062	36.628	0.31224	36.327	36.197	36.509	-0.30113					13	5	3	0	0	0	0.033024	1	13546	13546		99.799	70.717	1	12150000			10038	6638	5714	5752	9698	9698					-0.158449845572477
ESEDPDYYQY	10	Unmodified	_ESEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S4	4	654.7495727539062	2	654.748773	1307.48299	0.61385	0.00040192	0.11013	7.2109E-05	0.72399	0.00047403	654.7487482493776	36.715	0.79899	36.33	36.074	36.873	-0.38486					43	15	5	0	0	0	0.020806	1	13420	13420		118.89	89.813	1	68244000			10039	6638	5714	5752	9699	9699					-0.158449845572477
ESEDPDYYQY	10	Unmodified	_ESEDPDYYQY_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S4	4	1308.4908447265625	1	1308.49027	1307.48299	0.34278	0.00044852	0.087867	0.00011497	0.43064	0.00056349	1308.4903526960748	36.69	0.46452	36.305	36.126	36.591	-0.38486					19	8	3	0	0	0	0.02502	1	13441	13441		111.29	67.429	1	16710000			10040	6638	5714	5752	9700	9700					-0.158449845572477
ESEDPNYYQY	10	Unmodified	_ESEDPNYYQY_					0	0	0		nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;GTF2IRD2|p.F606Sfs*8|1|0.44|ENSG00000196275|chr7:74797697-74797697|G/-|frameshift_variant;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B	nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	MULTI-MSMS	HCT116MG_D190212_S3	3	654.2579345703125	2	654.256765	1306.49898	1.1188	0.00073196	0.04327	2.831E-05	1.162	0.00076027	654.2567333058624	35.548	0.23811	35.249	35.151	35.389	-0.29922					28	21	2	0	0	0	0.033083	1	13099	13099		99.755	99.755	1	25201000			10041	5329	5715	5753	9701	9701					-0.14201278320319943
ESEEEEDDDSY	11	Unmodified	_ESEEEEDDDSY_					0	0	0			REV__nc|ENSG00000048649|Q96T23-3|RSF1	REV__nc|ENSG00000048649|Q96T23-3|RSF1	MSMS	HCT116MG_D190212_S4	4	673.7229614257812	2	673.723149	1345.43174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.771	1	36.386	35.886	36.886	-0.38486								0	0	0	0.95023	1	13469	13469		6.2058	0.47393	1		+		10042	10610	5716	5754	9702	9702					-0.22715398112586627
ESEEFETMIP	10	Unmodified	_ESEEFETMIP_					0	0	0		tr|U7SXY0|U7SXY0_FUSNURibosomematurationfactorRimMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimMPE=3SV=1	tr|U7SXY0|U7SXY0_FUSNURibosomematurationfactorRimMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimMPE=3SV=1	tr|U7SXY0|U7SXY0_FUSNURibosomematurationfactorRimMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimMPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	606.2614135742188	2	606.260462	1210.50637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.082	1	27.893	27.393	28.393	-0.18847								0	0	0	0.90475	1	10148	10148		14.838	0	1				10043	18514	5717	5755	9703	9703					-0.09046262044262221
ESEILSLLVV	10	Unmodified	_ESEILSLLVV_					0	0	0			REV__ENST00000525945.1_1_11:123484122-123493300:+|nuORF	REV__ENST00000525945.1_1_11:123484122-123493300:+|nuORF	MSMS	HCT116MG_D190212_S1	1	551.3224487304688	2	551.323722	1100.63289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.92	1	50.92	50.42	51.42	0								0	0	0	0.92272	1	19441	19441		10.824	2.0785	1		+		10044	16272	5718	5756	9704	9704					0.0866003224321048
ESEKEQIRED	10	Unmodified	_ESEKEQIRED_					0	0	0		ENST00000476040.6_1_1:110210707-110212286:+|nuORF;nc|ENSG00000213366|P28161-2|GSTM2;ENSG00000213366|ENST00000241337|GSTM2	ENST00000476040.6_1_1:110210707-110212286:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF	MSMS	HCT116MG_D190212_S1	1	631.7467041015625	2	631.796588	1261.57862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.814	1	37.814	37.314	38.314	0								0	0	0	0.87399	1	14139	14139		19.257	3.1079	1				10045	6408	5719	5757	9705	9705					-0.041702116463284256
ESELLAVVET	10	Unmodified	_ESELLAVVET_					0	0	0			REV__nc|ENSG00000116218|Q9NP85-2|NPHS2	REV__nc|ENSG00000116218|Q9NP85-2|NPHS2	MSMS	HCT116MG_D190212_S1	1	545.2881469726562	2	545.287337	1088.56012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.969	1	27.969	27.469	28.469	0								0	0	0	0.84701	1	10171	10171		22.736	4.5899	1		+		10046	11579	5720	5758	9706	9706					0.019382784497565808
ESEPESVCSTP	11	Unmodified	_ESEPESVCSTP_					0	0	0		TRAK1|p.K299Sfs*50|1|0.68|ENSG00000182606|chr3:42193199-42193200|-/TC|frameshift_variant;nc|ENSG00000182606|Q9UPV9-3|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1;ENSG00000182606|ENST00000327628|TRAK1	TRAK1|p.K299Sfs*50|1|0.68|ENSG00000182606|chr3:42193199-42193200|-/TC|frameshift_variant	TRAK1|p.K299Sfs*50|1|0.68|ENSG00000182606|chr3:42193199-42193200|-/TC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	582.7393798828125	2	582.739893	1163.46523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.485	1	23.485	22.985	23.985	0								0	0	0	0.95113	1	8366	8366		5.7319	1.4026	1				10047	5677	5721	5759	9707	9707					-0.10996023083725959
ESEPGRGAQY	10	Unmodified	_ESEPGRGAQY_					0	0	0		ENST00000491898.5_1_6:43023605-43023818:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2;OBSL1-MRPL2|1|fusion	ENST00000491898.5_1_6:43023605-43023818:-|nuORF	ENST00000491898.5_1_6:43023605-43023818:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	547.2493896484375	2	547.249077	1092.4836	0.50219	0.00027482	0.038012	2.0802E-05	0.5402	0.00029563	547.2492175512514	19.947	0.67917	19.947	19.704	20.383	0					25	12	3	0	0	0	0.023406	1	6929	6929		114.2	51.629	1	8782100			10048	2352	5722	5760	9708	9708					-0.058941003268500936
ESEPGRGAQY	10	Unmodified	_ESEPGRGAQY_					0	0	0		ENST00000491898.5_1_6:43023605-43023818:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2;OBSL1-MRPL2|1|fusion	ENST00000491898.5_1_6:43023605-43023818:-|nuORF	ENST00000491898.5_1_6:43023605-43023818:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	547.2494506835938	2	547.249077	1092.4836	0.41185	0.00022538	0.14604	7.9923E-05	0.55789	0.00030531	547.2491428637475	20.464	0.73718	20.085	19.761	20.498	-0.37949					35	13	4	0	0	0	0.0084034	1	7102	7102		157.8	82.034	1	59285000			10049	2352	5722	5760	9709	9709					-0.058941003268500936
ESEPGRGAQY	10	Unmodified	_ESEPGRGAQY_					0	0	0		ENST00000491898.5_1_6:43023605-43023818:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2;OBSL1-MRPL2|1|fusion	ENST00000491898.5_1_6:43023605-43023818:-|nuORF	ENST00000491898.5_1_6:43023605-43023818:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	547.2492065429688	2	547.249077	1092.4836	0.40574	0.00022204	0.12924	7.0727E-05	0.53498	0.00029277	547.2490047653499	19.735	0.93768	19.795	19.333	20.271	0.05983					39	17	3	0	0	0	0.01069	1	6758	6758		145.13	73.207	1	25579000			10050	2352	5722	5760	9710	9710					-0.058941003268500936
ESEPGRGAQY	10	Unmodified	_ESEPGRGAQY_					0	0	0		ENST00000491898.5_1_6:43023605-43023818:-|nuORF;MRPL2|p.M292*|1|0.49|ENSG00000112651|chr6:43054319-43054319|G/-|frameshift_variant;ENSG00000112651|ENST00000388752|MRPL2;OBSL1-MRPL2|1|fusion	ENST00000491898.5_1_6:43023605-43023818:-|nuORF	ENST00000491898.5_1_6:43023605-43023818:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	547.2496948242188	2	547.249077	1092.4836	0.5421	0.00029666	0.058641	3.2091E-05	0.60074	0.00032875	547.2488354923364	20.089	0.67085	19.896	19.533	20.204	-0.19368					25	12	3	0	0	0	0.10561	1	6954	6954		72.968	36.841	1	5279700			10051	2352	5722	5760	9711	9711					-0.058941003268500936
ESERAPQAP	9	Unmodified	_ESERAPQAP_					0	0	0		PBXIP1|p.L38P|1|0.21|ENSG00000163346|chr1:154951860-154951860|A/G|missense_variant	PBXIP1|p.L38P|1|0.21|ENSG00000163346|chr1:154951860-154951860|A/G|missense_variant	PBXIP1|p.L38P|1|0.21|ENSG00000163346|chr1:154951860-154951860|A/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	493.21502685546875	2	492.740888	983.467223	0.062684	3.0887E-05	-0.13507	-6.6555E-05	-0.072386	-3.5668E-05	492.74091185794396	16.78	0.26018	16.864	16.756	17.016	0.084467					6	4	2	0	0	0	0.25004	1	5632	5632		15.847	1.0089	1	793130			10052	9729	5723	5761	9712	9712					-0.025171814929535685
ESERLLRE	8	Unmodified	_ESERLLRE_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S2	2	516.277587890625	2	516.277638	1030.54072	0.33719	0.00017408	0.013428	6.9328E-06	0.35061	0.00018101	516.2776686110035	25.171	0.41593	24.795	24.556	24.972	-0.37521					16	7	4	0	0	0	0.012008	2	9055	9055;9058		160.69	57.336	1	64600000			10053	18668	5724	5762	9713;9714	9713					0.02667366949526695
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S1	1	654.8534545898438	2	654.351334	1306.68811	0.94242	0.00061667	-0.3406	-0.00022287	0.60182	0.0003938	654.3509735490186	41.784	0.26028	41.784	41.654	41.914	0					11	4	3	0	0	0	0.00074706	1	15745	15745		180.74	129.25	1	98365000			10054	18668	5725	5763	9715	9715					0.047038387636803236
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S1	1	436.56982421875	3	436.569981	1306.68811	0.2373	0.0001036	-0.16043	-7.0038E-05	0.07687	3.3559E-05	436.56988141018354	41.84	0.57267	41.84	41.654	42.226	0					17	10	3	0	0	0	0.028788	1	15749	15749		84.06	58.063	1	57862000			10055	18668	5725	5763	9716	9716					0.047038387636803236
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S2	2	654.3518676757812	2	654.351334	1306.68811	0.70224	0.00045951	-0.057257	-3.7466E-05	0.64498	0.00042204	654.3512475215198	41.697	0.51678	41.629	41.396	41.913	-0.068199					28	9	4	0	0	0	0.00019917	1	15764	15764		193.01	133.95	1	493450000			10056	18668	5725	5763	9717	9717					0.047038387636803236
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S2	2	436.570068359375	3	436.569981	1306.68811	0.18502	8.0772E-05	-0.25798	-0.00011262	-0.07296	-3.1852E-05	436.56986104268617	41.702	0.36262	41.633	41.498	41.861	-0.068199					21	6	4	0	0	0	0.044769	1	15767	15767		72.276	34.505	1	275760000			10057	18668	5725	5763	9718	9718					0.047038387636803236
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S3	3	654.8529663085938	2	654.351334	1306.68811	0.62591	0.00040956	0.1392	9.1084E-05	0.7651	0.00050065	654.3513156114229	42.057	0.35221	41.755	41.48	41.833	-0.30257					13	6	3	0	0	0	0.0072904	2	15645	15612;15645		161.44	113.85	1	29339000			10058	18668	5725	5763	9719;9720	9720					0.047038387636803236
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S3	3	436.5699462890625	3	436.569981	1306.68811	0.14346	6.2632E-05	-0.12156	-5.3071E-05	0.0219	9.5607E-06	436.5698297088604	42.048	0.26002	41.746	41.572	41.833	-0.30257					10	4	3	0	0	0	0.025294	1	15660	15660		88.576	60.342	1	15528000			10059	18668	5725	5763	9721	9721					0.047038387636803236
ESERLLRELY	10	Unmodified	_ESERLLRELY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S4	4	654.853759765625	2	654.351334	1306.68811	0.5862	0.00038358	0.79508	0.00052026	1.3813	0.00090384	654.3517898756502	42.115	0.15515	41.74	41.632	41.787	-0.37565					4	2	2	0	0	0	0.016449	1	15483	15483		128.58	86.623	1	4515300			10060	18668	5725	5763	9722	9722					0.047038387636803236
ESETCSCEVL	10	Unmodified	_ESETCSCEVL_					0	0	0		ENST00000545606.5_1_12:67696139-67696184:+|nuORF	ENST00000545606.5_1_12:67696139-67696184:+|nuORF	ENST00000545606.5_1_12:67696139-67696184:+|nuORF	MSMS	HCT116MG_D190212_S4	4	550.2169189453125	2	550.21774	1098.42093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.051	1	33.667	33.167	34.167	-0.38426								0	0	0	0.94107	1	12418	12418		6.7232	0.36906	1				10061	8720	5726	5764	9723	9723					-0.12434750501552116
ESEVNRGDKY	10	Unmodified	_ESEVNRGDKY_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;KIF5B|p.Y228Sfs*3|1|0.11|ENSG00000170759|chr10:32037283-32037284|AA/-|frameshift_variant	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S2	2	598.7809448242188	2	598.780741	1195.54693	0.62298	0.00037303	0.093099	5.5746E-05	0.71607	0.00042877	598.7806588078614	17.98	0.26104	17.623	17.493	17.754	-0.35647					9	4	3	0	0	0	0.031798	1	6176	6176		100.71	60.469	1	9885600			10062	5152	5727	5765	9724	9724					-0.04302159609596856
ESEVNRGDKY	10	Unmodified	_ESEVNRGDKY_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;KIF5B|p.Y228Sfs*3|1|0.11|ENSG00000170759|chr10:32037283-32037284|AA/-|frameshift_variant	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MATCH	HCT116MG_D190212_S1	1		2	598.780741	1195.54693	0.75762	0.00045365	0.62861	0.0003764	1.3862	0.00083005	598.78089247971	17.437	0.15664	17.437	17.307	17.463	0	-0.093118	0.00039429	NaN	100.71	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2503700			10063	5152	5727	5765							-0.04302159609596856
ESFGEEMEAA	10	Unmodified	_ESFGEEMEAA_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MSMS	HCT116MG_D190212_S4	4	550.2178955078125	2	550.216054	1098.41756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.698	1	25.407	24.907	25.907	-0.29022								0	0	0	0.92917	1	9119	9119		9.3831	0.035688	1		+		10064	11200	5728	5766	9725	9725					-0.12771677283922145
ESFLWMLL	8	Unmodified	_ESFLWMLL_					0	0	0			REV__ENST00000573910.1_1_16:11410541-11410610:+|nuORF	REV__ENST00000573910.1_1_16:11410541-11410610:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7699584960938	2	519.770071	1037.52559	0.17443	9.0666E-05	-0.13197	-6.8595E-05	0.042463	2.2071E-05	519.769976323245	11.459	1.3624	11.178	10.587	11.95	-0.28186					115	53	3	0	0	0	0.86388	1	3931	3931		2.8892	0	1	3494900	+		10065	16586	5729	5767	9726	9726					0.00832783827968342
ESFNRPTPGP	10	Unmodified	_ESFNRPTPGP_					0	0	0			REV__nc|ENSG00000101400|Q13424-2|SNTA1	REV__nc|ENSG00000101400|Q13424-2|SNTA1	MULTI-SECPEP	HCT116MG_D190212_S2	2	551.2588500976562	2	551.269813	1100.52507	0.46009	0.00025363	0.26245	0.00014468	0.72254	0.00039831	551.2698894021064	36.64	0.31019	36.525	36.343	36.653	-0.11478					9	5	2	0	0	0	0.28496	1	13701	13701		9.3831	9.3831	1	19254000	+		10066	11123	5730	5768	9727	9727					-0.021169195674929142
ESFSLARRRWE	11	Unmodified	_ESFSLARRRWE_					0	0	0		ENSG00000185909|ENST00000332780|KLHDC8B	ENSG00000185909|ENST00000332780|KLHDC8B	ENSG00000185909|ENST00000332780|KLHDC8B	MULTI-MSMS	HCT116MG_D190212_S2	2	718.8731689453125	2	718.873299	1435.73205	0.97557	0.00070131	-1.023	-0.00073539	-0.047411	-3.4082E-05	718.8722709025935	42.162	0.30983	42.094	41.913	42.223	-0.068199					7	5	2	0	0	0	0.72792	1	15989	15989		11.495	0	1	15407000			10067	5853	5731	5769	9728	9728					0.03160867980659532
ESGAPGPLL	9	Unmodified	_ESGAPGPLL_					0	0	0			REV__ENST00000553772.5_1_14:31344123-31349661:+|nuORF	REV__ENST00000553772.5_1_14:31344123-31349661:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	420.7267761230469	2	420.726718	839.438883	-0.031179	-1.3118E-05	-0.13062	-5.4953E-05	-0.16179	-6.8071E-05	420.72657169626063	45.113	0.26041	45.113	44.931	45.192	0					7	4	2	0	0	0	0.30509	1	17096	17096		30.225	0	1	18668000	+		10068	11088	5732	5770	9729	9729					0.01274120597770434
ESGEEWRGF	9	Unmodified	_ESGEEWRGF_					0	0	0		ENSG00000035720|ENST00000265404|STAP1	ENSG00000035720|ENST00000265404|STAP1	ENSG00000035720|ENST00000265404|STAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	549.2828369140625	2	548.738345	1095.46214	0.49672	0.00027257	-1.6984	-0.00093195	-1.2016	-0.00065938	548.7377242310974	45.642	0.41725	45.331	44.992	45.409	-0.31094					12	7	2	0	0	0	0.65706	1	17049	17049		7.9102	3.1541	1	3078000			10069	984	5733	5771	9730	9730					-0.08177485355577119
ESGFFSHDKS	10	Unmodified	_ESGFFSHDKS_					0	0	0			REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	570.7515869140625	2	570.751453	1139.48835	0.36587	0.00020882	-0.51817	-0.00029575	-0.1523	-8.6925E-05	570.7512009983823	17.823	0.41774	17.467	17.284	17.702	-0.35647					21	7	4	0	0	0	0.43216	1	6090	6090		39.95	9.3132	1	71615000	+		10070	12327	5734	5772	9731	9731					-0.07581216184098594
ESGFFSHDKS	10	Unmodified	_ESGFFSHDKS_					0	0	0			REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	570.7005615234375	2	570.751453	1139.48835	0.36587	0.00020882	-0.51817	-0.00029575	-0.1523	-8.6925E-05	570.7512009983823	17.823	0.41774	17.467	17.284	17.702	-0.35647					21	7	4	0	0	0	0.2568	1	6073	6073		39.95	39.95	1	71615000	+		10071	12327	5734	5772	9732	9732					-0.07581216184098594
ESHNSECSS	9	Unmodified	_ESHNSECSS_					0	0	0			REV__RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant	REV__RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	490.175537109375	2	490.174721	978.334888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.446	1	17.527	17.027	18.027	0.081358								0	0	0	0.76694	1	5861	5861		11.64	0	1		+		10072	12384	5735	5773	9733	9733					-0.15514574292058114
ESIFVGNLHTL	11	Unmodified	_ESIFVGNLHTL_					0	0	0			REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MSMS	HCT116MG_D190212_S2	2	615.143310546875	2	615.32987	1228.64519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.393	1	35.251	34.751	35.751	-0.14245								0	0	0	0.9387	1	13201	13201		12.241	0.74595	1		+		10073	11975	5736	5774	9734	9734					0.04001068706224942
ESIRESSPPP	10	Unmodified	_ESIRESSPPP_					0	0	0			REV__nc|ENSG00000182871|P39060-1|COL18A1	REV__nc|ENSG00000182871|P39060-1|COL18A1	MSMS	HCT116MG_D190212_S2	2	549.751708984375	2	549.774928	1097.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.154	1	20.771	20.271	21.271	-0.38288								0	0	0	0.91906	1	7430	7430		11.64	3.047	1		+		10074	17239	5737	5775	9735	9735					-0.00956356632968891
ESISSSKRP	9	Unmodified	_ESISSSKRP_					0	0	0			REV__ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant	REV__ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	495.7645568847656	2	495.764363	989.514173	0.39228	0.00019448	-0.43874	-0.00021751	-0.046463	-2.3035E-05	495.76424919191004	24.905	0.25916	24.53	24.4	24.66	-0.37521					7	4	2	0	0	0	0.11023	1	8975	8975		56.177	10.437	1	16801000	+		10075	9833	5738	5776	9736	9736					0.018996780581915118
ESISSSKRP	9	Unmodified	_ESISSSKRP_					0	0	0			REV__ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant	REV__ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	495.764363	989.514173	0.39228	0.00019448	-0.43874	-0.00021751	-0.046463	-2.3035E-05	495.76424919191004	24.905	0.25916	24.53	24.4	24.66	-0.37521	0.003478	-1.8827E-05	NaN	56.177	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16801000	+		10076	9833	5738	5776							0.018996780581915118
ESKAERIAR	9	Unmodified	_ESKAERIAR_					0	0	0		SVIL|p.Q209Rfs*10|1|0.09|ENSG00000197321|chr10:29550799-29550800|GA/-|frameshift_variant;nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	SVIL|p.Q209Rfs*10|1|0.09|ENSG00000197321|chr10:29550799-29550800|GA/-|frameshift_variant	SVIL|p.Q209Rfs*10|1|0.09|ENSG00000197321|chr10:29550799-29550800|GA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.4774169921875	2	530.298904	1058.58326	0.61994	0.00032875	-0.19167	-0.00010164	0.42827	0.00022711	530.8000930578823	26.205	0.259	25.844	25.713	25.972	-0.36164					9	4	3	0	0	0	0.55223	1	9448	9448		13.906	0	1	11199000			10077	6135	5739	5777	9737	9737					0.05630762077748841
ESKAERIAR	9	Unmodified	_ESKAERIAR_					0	0	0		SVIL|p.Q209Rfs*10|1|0.09|ENSG00000197321|chr10:29550799-29550800|GA/-|frameshift_variant;nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.M1863Dfs*18|1|0.28|ENSG00000197321|chr10:29471186-29471187|-/C|frameshift_variant;SVIL|p.M1863Wfs*44|8|0.39|ENSG00000197321|chr10:29471187-29471187|C/-|frameshift_variant;SVIL|p.N2095Kfs*36|1|0.25|ENSG00000197321|chr10:29462394-29462395|-/T|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	SVIL|p.Q209Rfs*10|1|0.09|ENSG00000197321|chr10:29550799-29550800|GA/-|frameshift_variant	SVIL|p.Q209Rfs*10|1|0.09|ENSG00000197321|chr10:29550799-29550800|GA/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	530.298904	1058.58326	0.57121	0.00030291	-0.064868	-3.4399E-05	0.50634	0.00026851	530.2987830268364	25.7	0.20827	25.572	25.442	25.65	-0.12795	-0.13585	8.1537E-05	NaN	13.906	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3458300			10078	6135	5739	5777							0.05630762077748841
ESKAGLLTQ	9	Unmodified	_ESKAGLLTQ_					0	0	0			REV__nc|ENSG00000107863|Q5T5U3-3|ARHGAP21	REV__nc|ENSG00000107863|Q5T5U3-3|ARHGAP21	MSMS	HCT116MG_D190212_S3	3	473.7641906738281	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.916	1	29.679	29.179	30.179	-0.23655								0	0	0	0.55145	1	10885	10885		26.268	5.8536	1		+		10079	9975	5740	5778	9738	9738					0.03817463689279066
ESKIKVVL	8	Unmodified	_ESKIKVVL_					0	0	0			REV__NRIP1|p.M752V|1|0.04|ENSG00000180530|chr21:14965939-14965939|T/C|missense_variant	REV__NRIP1|p.M752V|1|0.04|ENSG00000180530|chr21:14965939-14965939|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	458.2964782714844	2	458.29731	914.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.036	1	40.734	40.234	41.234	-0.30185								0	0	0	0.8837	1	15253	15253		4.756	0	1		+		10080	17353	5741	5779	9739	9739					0.11936118971038923
ESKKEQTP	8	Unmodified	_ESKKEQTP_					0	0	0		nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	nc|ENSG00000171490|O76021-2|RSL1D1	nc|ENSG00000171490|O76021-2|RSL1D1	MULTI-MSMS	HCT116MG_D190212_S1	1	473.74566650390625	2	473.745639	945.476725	0.21761	0.00010309	-0.6981	-0.00033072	-0.48048	-0.00022763	473.74542586398223	21.568	0.20844	21.568	21.437	21.646	0					5	3	2	0	0	0	0.60054	1	7620	7620		32.305	3.8186	1	7911300			10081	5198	5742	5780	9740	9740					0.0018058679257819676
ESKLSFAT	8	Unmodified	_ESKLSFAT_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	MSMS	HCT116MG_D190212_S4	4	441.73162841796875	2	441.732	881.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.756	1	29.407	28.907	29.907	-0.34921								0	0	0	0.8396	1	10759	10759		19.439	0	1				10082	4392	5743	5781	9741	9741					0.003981032521778616
ESKRKTMRRMQ	11	Unmodified	_ESKRKTMRRMQ_					0	0	0			REV__PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant	REV__PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	725.8905639648438	2	725.890112	1449.76567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.504	1	21.504	21.004	22.004	0								0	0	0	0.95113	1	7568	7568		5.7319	0	1		+		10083	17404	5744	5782	9742	9742					0.05877830156555319
ESKRKTQGP	9	Unmodified	_ESKRKTQGP_					0	0	0		HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|34|3|anti-sense	HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|34|3|anti-sense	HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|34|3|anti-sense	MSMS	HCT116MG_D190212_S3	3	515.7852172851562	2	515.78563	1029.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.691	1	21.709	21.209	22.209	0.018446								0	0	0	0.76669	1	7571	7571		12.532	0.89125	1				10084	9222	5745	5783	9743	9743					0.043110731864544505
ESKSGLKIIKL	11	Unmodified	_ESKSGLKIIKL_					0	0	0		DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant;DNAH6|p.S3773Lfs*5|1|0.09|ENSG00000115423|chr2:84796377-84796377|T/-|frameshift_variant;ENSG00000115423|ENST00000389394|DNAH6	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	608.3859252929688	2	608.387188	1214.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.682	1	52.494	51.994	52.994	-0.18725								0	0	0	0.95686	1	20242	20242		2.7352	1.0826	1				10085	706	5746	5784	9744	9744					0.16103378188199713
ESKSLEHSP	9	Unmodified	_ESKSLEHSP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	HCT116MG_D190212_S3	3	506.73602294921875	2	507.248546	1012.48254	0.35497	0.00018006	-0.44042	-0.0002234	-0.085451	-4.3345E-05	507.2482495648046	25.042	0.72899	24.936	24.683	25.412	-0.10618					23	13	2	0	0	0	0.24195	1	9087	9087		18.135	0	1	7298900	+		10086	13681	5747	5785	9745	9745					-0.02320314695759862
ESKSRQAIEEY	11	Unmodified	_ESKSRQAIEEY_					0	0	0			REV__ENSG00000185069|ENST00000332411|KRT76	REV__ENSG00000185069|ENST00000332411|KRT76	MULTI-MSMS	HCT116MG_D190212_S3	3	670.3261108398438	2	670.328056	1338.64156	0.94192	0.00063139	-0.77646	-0.00052048	0.16545	0.00011091	670.3271380325418	27.548	0.78038	27.359	26.84	27.621	-0.18847					21	14	2	0	0	0	0.73536	1	9940	9940		8.7454	0	1	3763300	+	+	10087	10262	5748	5786	9746	9746					-0.014216458582495761
ESKSRQAIEEY	11	Unmodified	_ESKSRQAIEEY_					0	0	0			REV__ENSG00000185069|ENST00000332411|KRT76	REV__ENSG00000185069|ENST00000332411|KRT76	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	670.328056	1338.64156	0.94192	0.00063139	-0.77646	-0.00052048	0.16545	0.00011091	670.3271380325418	27.548	0.78038	27.359	26.84	27.621	-0.18847	-0.058425	-0.00069933	NaN	8.7454	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3763300	+	+	10088	10262	5748	5786							-0.014216458582495761
ESKSRQAIEEY	11	Unmodified	_ESKSRQAIEEY_					0	0	0			REV__ENSG00000185069|ENST00000332411|KRT76	REV__ENSG00000185069|ENST00000332411|KRT76	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	670.328056	1338.64156	0.70352	0.00047159	-0.10549	-7.0713E-05	0.59803	0.00040088	670.3277711817444	27.798	0.76925	27.476	26.888	27.658	-0.32157	0.058425	0.00020021	NaN	8.7454	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2846600	+	+	10089	10262	5748	5786							-0.014216458582495761
ESLAVDIIS	9	Unmodified	_ESLAVDIIS_					0	0	0			REV__nc|ENSG00000157388|Q01668-4|CACNA1D	REV__nc|ENSG00000157388|Q01668-4|CACNA1D	MULTI-MSMS	HCT116MG_D190212_S4	4	946.5116577148438	1	946.509154	945.501877	0.55204	0.00052251	0.50317	0.00047625	1.0552	0.00099876	946.5094873772819	43.465	0.16673	43.091	42.997	43.163	-0.37433					6	4	2	0	0	0	0.023611	1	15983	15983		92.822	18.399	1	4218500	+		10090	10078	5749	5787	9747	9747					0.026946415951556446
ESLCRDKDP	9	Unmodified	_ESLCRDKDP_					0	0	0		PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant;PSMD1|p.L603Afs*7|1|0.19|ENSG00000173692|chr2:231085100-231085101|-/T|frameshift_variant;PSMD1-NHEJ1|1|fusion;nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	531.7489013671875	2	531.747856	1061.48116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.557	1	15.23	14.73	15.73	-0.32684								0	0	0	0.64498	1	5177	5177		21.747	6.9084	1				10091	9788	5750	5788	9748	9748					-0.04712272056190159
ESLDQEMNSLM	11	Unmodified	_ESLDQEMNSLM_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	HCT116MG_D190212_S3	3	649.2798461914062	2	648.775953	1295.53735	0.53537	0.00034733	0.55773	0.00036184	1.0931	0.00070918	648.7760807465506	16.334	0.77996	16.419	15.873	16.653	0.085424					26	14	2	0	0	0	0.73536	1	5485	5485		8.7454	1.1365	1	4503600			10092	4450	5751	5789	9749	9749					-0.09859432001667301
ESLDRARQ	8	Unmodified	_ESLDRARQ_					0	0	0			REV__nc|ENSG00000005379|O95153-3|TSPOAP1;REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	487.7543640136719	2	487.75433	973.494107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.059	1	17.702	17.202	18.202	-0.35647								0	0	0	0.71912	1	6184	6184		29.082	3.6823	1		+		10093	13751;10474	5752	5790	9750	9750					0.006299271182342636
ESLELASQHQ	10	Unmodified	_ESLELASQHQ_					0	0	0			REV__CON__P28800	REV__CON__P28800	MULTI-MSMS	HCT116MG_D190212_S3	3	571.27783203125	2	571.277835	1140.54112	0.38656	0.00022083	-0.012813	-7.3199E-06	0.37375	0.00021351	571.2779311701195	31.239	0.26124	30.978	30.813	31.074	-0.26071					7	4	2	0	0	0	0.35312	1	11417	11417		45.74	3.4274	1	6719000	+	+	10094	10258	5753	5791	9751	9751					-0.023532581212975856
ESLELASQHQ	10	Unmodified	_ESLELASQHQ_					0	0	0			REV__CON__P28800	REV__CON__P28800	MULTI-MSMS	HCT116MG_D190212_S4	4	571.2783203125	2	571.277835	1140.54112	0.53459	0.0003054	-0.023637	-1.3503E-05	0.51095	0.0002919	571.2778529370019	31.368	0.31176	30.997	30.816	31.127	-0.37026					8	5	2	0	0	0	0.63124	1	11410	11410		26.021	2.2196	1	4144100	+	+	10095	10258	5753	5791	9752	9752					-0.023532581212975856
ESLELASQHQ	10	Unmodified	_ESLELASQHQ_					0	0	0			REV__CON__P28800	REV__CON__P28800	MULTI-MATCH	HCT116MG_D190212_S2	2		2	571.277835	1140.54112	0.39752	0.00022709	-0.44065	-0.00025173	-0.043132	-2.464E-05	571.2773648493967	31.064	0.20701	30.797	30.663	30.87	-0.26704	-0.12691	-0.00029177	NaN	45.74	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6436800	+	+	10096	10258	5753	5791							-0.023532581212975856
ESLELASQHQ	10	Unmodified	_ESLELASQHQ_					0	0	0			REV__CON__P28800	REV__CON__P28800	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	571.277835	1140.54112	0.53459	0.0003054	-0.023637	-1.3503E-05	0.51095	0.0002919	571.2778529370019	31.368	0.31176	30.997	30.816	31.127	-0.37026	0.073046	0.00018469	NaN	45.74	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4144100	+	+	10097	10258	5753	5791							-0.023532581212975856
ESLFHQQI	8	Unmodified	_ESLFHQQI_					0	0	0		ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267;ZNF267|p.L310Sfs*2|1|0.08|ENSG00000185947|chr16:31915175-31915176|-/T|frameshift_variant	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	502.2565002441406	2	501.256174	1000.49779	0.33781	0.00016933	-0.30235	-0.00015156	0.035451	1.777E-05	501.256141571646	32.527	0.78085	32.296	31.787	32.567	-0.23009					50	14	5	0	0	0	0.6854	1	12139	12139		24.674	1.5255	1	192140000			10098	5856	5754	5792	9753	9753					-0.0024340310790194053
ESLITGEAMPV	11	Unmodified	_ESLITGEAMPV_					0	0	0		ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B	ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant	ATP7A|p.K1294Nfs*3|1|0.26|ENSG00000165240|chrX:78042659-78042659|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	574.0275268554688	2	573.789189	1145.56383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.686	1	50.514	50.014	51.014	-0.1719								0	0	0	0.8787	1	19430	19430		22.736	1.1993	1				10099	229	5755	5793	9754	9754					-0.003133750480174058
ESLKMANTWV	10	Unmodified	_ESLKMANTWV_					0	0	0			REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	MSMS	HCT116MG_D190212_S3	3	589.7957153320312	2	589.797349	1177.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.087	1	39.785	39.285	40.285	-0.30137								0	0	0	0.92917	1	14870	14870		9.3831	2.66	1		+		10100	12360	5756	5794	9755	9755					-0.0015424909126977582
ESLKQTLP	8	Unmodified	_ESLKQTLP_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MSMS	HCT116MG_D190212_S2	2	458.2603454589844	2	458.260925	914.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.929	1	25.56	25.06	26.06	-0.36914								0	0	0	0.8837	1	9359	9359		11.64	0	1				10101	5714	5757	5795	9756	9756					0.04662365177614447
ESLLHLLIRRH	11	Unmodified	_ESLLHLLIRRH_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10;NLRP10|p.H474Mfs*7|1|0.12|ENSG00000182261|chr11:7960193-7960193|A/-|frameshift_variant	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-MSMS	HCT116MG_D190212_S2	2	693.9251098632812	2	693.920052	1385.82555	0.65212	0.00045252	2.395	0.001662	3.0471	0.0021145	694.4213897864507	55.222	1.1278	55.034	54.765	55.893	-0.18797					40	21	3	0	0	0	0.74191	1	21365	21365		4.897	0.36815	1	26347000			10102	5665	5758	5796	9757	9757					0.14807212153732507
ESLLNWEEWTF	11	Unmodified	_ESLLNWEEWTF_					0	0	0			REV__ENST00000594629.1_1_19:58382130-58400344:-|nuORF	REV__ENST00000594629.1_1_19:58382130-58400344:-|nuORF	MSMS	HCT116MG_D190212_S4	4	727.3321533203125	2	727.33535	1452.65615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.646	1	20.445	19.945	20.945	-0.20133								0	0	0	0.95113	1	7080	7080		5.7319	0.83484	1		+		10103	14199	5759	5797	9758	9758					-0.0520757371016316
ESLLRHQPP	9	Unmodified	_ESLLRHQPP_					0	0	0		GPATCH3|p.R496H|1|0.05|ENSG00000198746|chr1:26891101-26891101|C/T|missense_variant	GPATCH3|p.R496H|1|0.05|ENSG00000198746|chr1:26891101-26891101|C/T|missense_variant	GPATCH3|p.R496H|1|0.05|ENSG00000198746|chr1:26891101-26891101|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	538.7969970703125	2	538.795998	1075.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.497	1	34.322	33.822	34.822	-0.17512								0	0	0	0.53872	1	12836	12836		26.884	8.7373	1				10104	9187	5760	5798	9759	9759					0.04267663566088231
ESLPPAAEPS	10	Unmodified	_ESLPPAAEPS_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	HCT116MG_D190212_S1	1	1000.5318603515625	1	997.483667	996.476391	0.55328	0.00055189	0.043044	4.2935E-05	0.59632	0.00059482	997.4835358660661	44.224	0.42709	44.224	44.036	44.464	0					18	7	4	0	0	0	0.56527	1	16739	16739		30.637	1.555	1	146300000			10105	2318	5761	5799	9760	9760					-0.02198832927285821
ESLPPLFTT	9	Unmodified	_ESLPPLFTT_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	HCT116MG_D190212_S3	3	502.76910400390625	2	502.768583	1003.52261	0.35892	0.00018045	0.36409	0.00018305	0.72301	0.00036351	502.768876538913	19.092	0.20772	19.161	19.031	19.239	0.069159					5	3	2	0	0	0	0.49914	1	6553	6553		16.942	3.8998	1	6140400	+		10106	13681	5762	5800	9761	9761					0.020992319748188493
ESLQGETGSPD	11	Unmodified	_ESLQGETGSPD_					0	0	0			REV__ENST00000301781.10_1_11:62457841-62462085:-|nuORF	REV__ENST00000301781.10_1_11:62457841-62462085:-|nuORF	MSMS	HCT116MG_D190212_S4	4	559.76904296875	2	560.243657	1118.47276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.403	1	33.021	32.521	33.521	-0.38223								0	0	0	0.90489	1	12159	12159		19.362	2.249	1		+		10107	13178	5763	5801	9762	9762					-0.08173547491765021
ESLSKGNQLL	10	Unmodified	_ESLSKGNQLL_					0	0	0			REV__ENST00000483634.1_1_6:24408642-24418827:+|nuORF	REV__ENST00000483634.1_1_6:24408642-24418827:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	545.2244262695312	2	544.800946	1087.58734	0.81258	0.0004427	1.314	0.00071587	2.1266	0.0011586	544.8009361665265	28.524	0.21324	28.524	28.375	28.588	0					7	3	3	0	0	0	0.30526	1	10370	10370		14.838	0	1	3493900	+		10108	11787	5764	5802	9763	9763					0.04704806780819126
ESLSRKTPP	9	Unmodified	_ESLSRKTPP_					0	0	0			REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant	REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	507.78253173828125	2	507.782556	1013.55056	0.13886	7.0513E-05	-0.26866	-0.00013642	-0.1298	-6.591E-05	507.78226490592954	32.232	0.4166	31.954	31.786	32.202	-0.27841					9	7	2	0	0	0	0.35128	1	11846	11846		25.399	3.8623	1	4764300	+		10109	10928	5765	5803	9764	9764					0.04432554954905754
ESLSRKTPPPT	11	Unmodified	_ESLSRKTPPPT_					0	0	0			REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant	REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	606.8306884765625	2	606.832777	1211.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.443	1	35.3	34.8	35.8	-0.14245								0	0	0	0.94269	1	13221	13221		10.151	1.4052	1		+		10110	10928	5766	5804	9765	9765					0.05364167217908289
ESLVRSLSP	9	Unmodified	_ESLVRSLSP_					0	0	0			REV__tr|U7SMK4|U7SMK4_FUSNUCyclicnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01903PE=4SV=1	REV__tr|U7SMK4|U7SMK4_FUSNUCyclicnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01903PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	494.2771911621094	2	494.277106	986.53966	0.054056	2.6719E-05	0.56577	0.00027965	0.61983	0.00030637	494.27732280418024	38.23	0.5276	37.847	37.568	38.095	-0.38282					20	14	2	0	0	0	0.1754	1	13974	13974		43.858	3.9086	1	3908100	+		10111	17726	5767	5805	9766	9766					0.04585152580614249
ESLWISYFD	9	Unmodified	_ESLWISYFD_					0	0	0		AARS2|p.R166S|1|0.05|ENSG00000124608|chr6:44311473-44311473|C/A|missense_variant	AARS2|p.R166S|1|0.05|ENSG00000124608|chr6:44311473-44311473|C/A|missense_variant	AARS2|p.R166S|1|0.05|ENSG00000124608|chr6:44311473-44311473|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	580.41748046875	2	580.268947	1158.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.41	1	14.249	13.749	14.749	-0.16089								0	0	0	0.76967	1	4562	4562		2.0598	0.21551	1				10112	1	5768	5806	9767	9767					-0.04957973376122027
ESMCECSSCC	10	Unmodified	_ESMCECSSCC_					0	0	0		ENST00000498611.5_1_22:50657800-50659866:-|nuORF	ENST00000498611.5_1_22:50657800-50659866:-|nuORF	ENST00000498611.5_1_22:50657800-50659866:-|nuORF	MSMS	HCT116MG_D190212_S3	3	541.1567993164062	2	541.141806	1080.26906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.291	1	50.979	50.479	51.479	-0.31166								0	0	0	0.96377	1	19363	19363		1.6526	1.6526	1				10113	8412	5769	5807	9768	9768					-0.26786514116793114
ESMRKEMLA	9	Unmodified	_ESMRKEMLA_					0	0	0			REV__nc|ENSG00000108309|Q59EK9-4|RUNDC3A	REV__nc|ENSG00000108309|Q59EK9-4|RUNDC3A	MULTI-MSMS	HCT116MG_D190212_S2	2	547.7696533203125	2	547.770277	1093.526	0.23275	0.00012749	-0.10663	-5.841E-05	0.12612	6.9084E-05	547.7703015293555	29.977	0.25804	29.693	29.564	29.822	-0.28453					8	4	2	0	0	0	0.12205	1	11019	11019		53.833	8.0929	1	39130000	+		10114	11341	5770	5808	9769	9769					-0.017021645144723152
ESMRKEMLA	9	Unmodified	_ESMRKEMLA_					0	0	0			REV__nc|ENSG00000108309|Q59EK9-4|RUNDC3A	REV__nc|ENSG00000108309|Q59EK9-4|RUNDC3A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	547.770277	1093.526	0.23275	0.00012749	-0.10663	-5.841E-05	0.12612	6.9084E-05	547.7703015293555	29.977	0.25804	29.693	29.564	29.822	-0.28453	-0.062269	-3.486E-05	NaN	53.833	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39130000	+		10115	11341	5770	5808							-0.017021645144723152
ESMWDPMY	8	Unmodified	_ESMWDPMY_					0	0	0			REV__tr|U7STD7|U7STD7_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01447PE=4SV=1	REV__tr|U7STD7|U7STD7_FUSNUCysteinesynthaseAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01447PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7015380859375	2	529.701528	1057.3885	0.37905	0.00020078	-0.73118	-0.0003873	-0.35212	-0.00018652	529.7013639763717	23.002	0.20812	22.617	22.518	22.726	-0.38521					6	3	2	0	0	0	0.81821	1	8198	8198		9.3474	2.0582	1	6720700	+		10116	17792	5771	5809	9770	9770					-0.13789493113904427
ESNEAEVKR	9	Unmodified	_ESNEAEVKR_					0	0	0			REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	531.2655639648438	2	531.264727	1060.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.605	1	40.227	39.727	40.727	-0.37828								0	0	0	0.76759	1	14903	14903		9.3831	0.63772	1		+		10117	13751	5772	5810	9771	9771					-0.012935272927734331
ESNIKKVAQA	10	Unmodified	_ESNIKKVAQA_					0	0	0			REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	544.3077392578125	2	544.308938	1086.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.072	1	37.979	37.479	38.479	-0.09301								0	0	0	0.92283	1	14292	14292		10.8	1.4164	1		+		10118	17821	5773	5811	9772	9772					0.06348513017701407
ESNPQQREQ	9	Unmodified	_ESNPQQREQ_					0	0	0		MAST4|p.G1923Qfs*4|1|0.33|ENSG00000069020|chr5:67164945-67164946|GG/-|frameshift_variant	MAST4|p.G1923Qfs*4|1|0.33|ENSG00000069020|chr5:67164945-67164946|GG/-|frameshift_variant	MAST4|p.G1923Qfs*4|1|0.33|ENSG00000069020|chr5:67164945-67164946|GG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	558.257568359375	2	558.257434	1114.50031	0.41429	0.00023128	-0.26405	-0.00014741	0.15024	8.3873E-05	558.2569962173674	15.168	0.57187	15.251	14.934	15.506	0.083271					14	10	2	0	0	0	0.60612	1	4957	4957		10.824	0	1	1012000			10119	9319	5774	5812	9773	9773					-0.05235599440902661
ESPCIAKICP	10	Unmodified	_ESPCIAKICP_					0	0	0			REV__EBF1|p.S268C|1|0.39|ENSG00000164330|chr5:158796452-158796452|T/A|missense_variant	REV__EBF1|p.S268C|1|0.39|ENSG00000164330|chr5:158796452-158796452|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	530.76171875	2	530.76192	1059.50929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.463	1	11.181	10.681	11.681	-0.28186								0	0	0	0.96183	1	3695	3695		0.45834	0	1		+		10120	10433	5775	5813	9774	9774					-0.01808665400449172
ESPFSSWKAY	10	Unmodified	_ESPFSSWKAY_					0	0	0			REV__nc|ENSG00000115607|O95256-2|IL18RAP	REV__nc|ENSG00000115607|O95256-2|IL18RAP	MULTI-MSMS	HCT116MG_D190212_S2	2	401.18896484375	3	401.188989	1200.54514	-0.18668	-7.4894E-05	0.40215	0.00016134	0.21547	8.6446E-05	401.18920031040966	10.58	0.47098	10.307	10.1	10.571	-0.27364					54	19	4	0	0	0	0.87945	1	3303	3303		1.7423	0.54893	1	3719300	+		10121	11551	5776	5814	9775	9775					-0.04711168627545703
ESPLGNKYF	9	Unmodified	_ESPLGNKYF_					0	0	0			REV__nc|ENSG00000086717|O14829-5|PPEF1	REV__nc|ENSG00000086717|O14829-5|PPEF1	MSMS	HCT116MG_D190212_S1	1	527.7656860351562	2	527.763832	1053.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.747	1	51.747	51.247	52.247	0								0	0	0	0.50556	1	19778	19778		28.487	3.0875	1		+		10122	10937	5777	5815	9776	9776					-0.011505363107289668
ESPQNAIE	8	Unmodified	_ESPQNAIE_					0	0	0			REV__ENST00000466874.1_1_X:70316351-70316719:+|nuORF	REV__ENST00000466874.1_1_X:70316351-70316719:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	445.2530517578125	2	444.208889	886.403226	0.35506	0.00015772	-0.13509	-6.0008E-05	0.21997	9.7713E-05	444.208719114791	28.669	0.41635	28.463	28.281	28.697	-0.20593					14	7	3	0	0	0	0.83066	1	10335	10335		7.9102	0.62092	1	18718000	+		10123	13802	5778	5816	9777	9777					-0.044519616498973846
ESPSECYFP	9	Unmodified	_ESPSECYFP_					0	0	0		TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant;TBC1D32|p.F1022Sfs*5|1|0.3|ENSG00000146350|chr6:121113166-121113166|A/-|frameshift_variant;ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;TBC1D32|p.L979I|1|0.28|ENSG00000146350|chr6:121126426-121126426|G/T|missense_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	TBC1D32|p.L1005Ffs*9|1|0.37|ENSG00000146350|chr6:121115215-121115216|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7109985351562	2	529.710408	1057.40626	0.45176	0.0002393	0.91497	0.00048467	1.3667	0.00072397	529.7107988628339	17.144	0.20832	16.795	16.665	16.873	-0.34933					6	3	2	0	0	0	0.43775	1	5843	5843		20.454	2.3073	1	8667000			10124	3944	5779	5817	9778	9778					-0.1201445458739272
ESQETKFVS	9	Unmodified	_ESQETKFVS_					0	0	0			REV__ENSG00000103569|ENST00000219919|AQP9	REV__ENSG00000103569|ENST00000219919|AQP9	MSMS	HCT116MG_D190212_S3	3	352.17291259765625	3	352.173228	1053.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.97	1	59.714	59.214	60.214	-0.25557								0	0	0	0.76954	1	22851	22851		2.4985	0	1		+		10125	11198	5780	5818	9779	9779					-0.026754478985594687
ESQKGVKGTY	10	Unmodified	_ESQKGVKGTY_					0	0	0			REV__DNAH8|p.A853Lfs*9|1|0.12|ENSG00000124721|chr6:38807662-38807662|A/-|frameshift_variant	REV__DNAH8|p.A853Lfs*9|1|0.12|ENSG00000124721|chr6:38807662-38807662|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	548.78515625	2	548.785296	1095.55604	0.43421	0.00023829	-0.35249	-0.00019344	0.081716	4.4845E-05	548.7849612323861	20.695	0.31742	20.316	20.076	20.394	-0.37949					7	5	2	0	0	0	0.67188	1	7255	7255		22.736	0.078198	1	16643000	+		10126	10387	5781	5819	9780	9780					0.0120823374675183
ESQKGVKGTY	10	Unmodified	_ESQKGVKGTY_					0	0	0			REV__DNAH8|p.A853Lfs*9|1|0.12|ENSG00000124721|chr6:38807662-38807662|A/-|frameshift_variant	REV__DNAH8|p.A853Lfs*9|1|0.12|ENSG00000124721|chr6:38807662-38807662|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	548.785296	1095.55604	0.43421	0.00023829	-0.35249	-0.00019344	0.081716	4.4845E-05	548.7849612323861	20.695	0.31742	20.316	20.076	20.394	-0.37949	0	0	NaN	22.736	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16643000	+		10127	10387	5781	5819							0.0120823374675183
ESQKHTSV	8	Unmodified	_ESQKHTSV_					0	0	0			REV__FLG|p.T2193Hfs*226|1|0.45|ENSG00000143631|chr1:152308309-152308309|T/-|frameshift_variant	REV__FLG|p.T2193Hfs*226|1|0.45|ENSG00000143631|chr1:152308309-152308309|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	458.2288513183594	2	458.230156	914.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.914	1	35.786	35.286	36.286	-0.12799								0	0	0	0.8837	1	13414	13414		8.5933	2.2392	1		+	+	10128	16826	5782	5820	9781	9781					-0.014885665216525013
ESQLSFSPP	9	Unmodified	_ESQLSFSPP_					0	0	0		ENST00000356688.8_2_2:110371678-110371714:-|nuORF	ENST00000356688.8_2_2:110371678-110371714:-|nuORF	ENST00000356688.8_2_2:110371678-110371714:-|nuORF	MSMS	HCT116MG_D190212_S2	2	496.24053955078125	2	496.24019	990.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.248	1	40.176	39.676	40.676	-0.072838								0	0	0	0.71969	1	15173	15173		18.135	3.2967	1				10129	7300	5783	5821	9782	9782					-0.029788155817072948
ESQRALSPPA	10	Unmodified	_ESQRALSPPA_					0	0	0		CAPRIN2|p.L104Pfs*16|1|0.33|ENSG00000110888|chr12:30753453-30753454|-/G|frameshift_variant	CAPRIN2|p.L104Pfs*16|1|0.33|ENSG00000110888|chr12:30753453-30753454|-/G|frameshift_variant	CAPRIN2|p.L104Pfs*16|1|0.33|ENSG00000110888|chr12:30753453-30753454|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.1994018554688	2	528.277638	1054.54072	0.49103	0.0002594	0.15969	8.4361E-05	0.65072	0.00034376	528.2775631090824	22.203	0.26032	21.818	21.635	21.895	-0.3852					6	4	2	0	0	0	0.30526	1	7807	7807		6.2058	6.2058	1	11366000			10130	324	5784	5822	9783	9783					0.01563366949540068
ESQRLRHNI	9	Unmodified	_ESQRLRHNI_					0	0	0		ENST00000261509.10_1_4:169589460-169589502:+|nuORF	ENST00000261509.10_1_4:169589460-169589502:+|nuORF	ENST00000261509.10_1_4:169589460-169589502:+|nuORF	MSMS	HCT116MG_D190212_S1	1	384.8793640136719	3	384.879261	1151.61595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.159	1	16.159	15.659	16.659	0								0	0	0	0.768	1	5419	5419		4.897	0	1				10131	6854	5785	5823	9784	9784					0.04620969200618674
ESQRRTLKL	9	Unmodified	_ESQRRTLKL_					0	0	0			REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	565.8358154296875	2	565.835654	1129.65676	0.4191	0.00023714	-0.10562	-5.9763E-05	0.31348	0.00017738	565.835516144355	19.804	0.20757	19.429	19.298	19.506	-0.37503					7	3	3	0	0	0	0.49616	1	6912	6912		17.113	0	1	18328000	+		10132	18014	5786	5824	9785	9785					0.0971131052021974
ESRAPDMSPQ	10	Unmodified	_ESRAPDMSPQ_					0	0	0		ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	MSMS	HCT116MG_D190212_S4	4	559.249267578125	2	559.250763	1116.48697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.105	1	34.719	34.219	35.219	-0.38606								0	0	0	0.91279	1	12845	12845		13.042	2.2185	1				10133	3094	5787	5825	9786	9786					-0.06661173544512167
ESRCEEYP	8	Unmodified	_ESRCEEYP_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant;ENST00000607647.5_1_7:135282676-135283553:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	HCT116MG_D190212_S3	3	506.73602294921875	2	506.705657	1011.39676	0.37593	0.00019048	-0.44785	-0.00022693	-0.071927	-3.6446E-05	506.705291042384	25.353	0.26004	25.247	25.1	25.36	-0.10618					8	4	2	0	0	0	0.31111	1	9087	9087		15.768	2.2603	1	3444400			10134	4256	5788	5826	9787	9787					-0.10848222872925817
ESRGLEKGTP	10	Unmodified	_ESRGLEKGTP_					0	0	0		ENST00000453208.5_2_22:38005135-38009171:+|nuORF	ENST00000453208.5_2_22:38005135-38009171:+|nuORF	ENST00000453208.5_2_22:38005135-38009171:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	358.5243225097656	3	358.524372	1072.55129	-0.40875	-0.00014655	0.28582	0.00010247	-0.12294	-4.4075E-05	358.5244519719223	17.478	0.20798	17.559	17.43	17.638	0.081358					5	3	2	0	0	0	0.82332	1	5898	5898		5.7834	0.88642	1	4756400			10135	8001	5789	5827	9788	9788					0.017913496039454913
ESRGPLRQ	8	Unmodified	_ESRGPLRQ_					0	0	0			REV__ENST00000428962.2_1_1:155168428-155169890:-|nuORF	REV__ENST00000428962.2_1_1:155168428-155169890:-|nuORF	MSMS	HCT116MG_D190212_S1	1	471.760009765625	2	471.759415	941.504277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.021	1	19.021	18.521	19.521	0								0	0	0	0.28827	1	6572	6572		56.177	0	1		+		10136	15572	5790	5828	9789	9789					0.031185348434860316
ESRKTKKK	8	Unmodified	_ESRKTKKK_					0	0	0		ENSG00000087152|ENST00000587097|ATXN7L3;nc|ENSG00000087152|Q14CW9-2|ATXN7L3	ENSG00000087152|ENST00000587097|ATXN7L3	ENSG00000087152|ENST00000587097|ATXN7L3	MULTI-MSMS	HCT116MG_D190212_S2	2	1004.62255859375	1	1004.6211	1003.61383	0.73532	0.00073872	0.066431	6.6738E-05	0.80175	0.00080546	1004.6209623085781	52.342	1.0316	52.155	51.574	52.606	-0.18725					35	19	3	0	0	0	0.85329	1	20085	20085		4.756	4.756	1	33563000			10137	1480	5791	5829	9790	9790					0.11216540462794455
ESRLWEPEA	9	Unmodified	_ESRLWEPEA_					0	0	0			REV__ENSG00000185271|ENST00000636854|KLHL33	REV__ENSG00000185271|ENST00000636854|KLHL33	MULTI-MSMS	HCT116MG_D190212_S4	4	558.7699584960938	2	558.769645	1115.52474	0.40446	0.000226	0.10954	6.1205E-05	0.514	0.00028721	558.7694972295619	36.422	0.8046	36.036	35.526	36.331	-0.38558					27	15	2	0	0	0	0.47809	1	13237	13237		18.146	4.2403	1	4288200	+		10138	13838	5792	5830	9791	9791					-0.028403392873769917
ESRTRSLP	8	Unmodified	_ESRTRSLP_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-6|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-6|HDAC7	MSMS	HCT116MG_D190212_S3	3	473.2718505859375	2	473.259248	944.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.46	1	33.17	32.67	33.67	-0.29013								0	0	0	0.8837	1	12281	12281		12.532	0	1		+		10139	17073	5793	5831	9792	9792					0.02947115123618005
ESRYTRQP	8	Unmodified	_ESRYTRQP_					0	0	0			REV__ENST00000510738.2_1_12:19413894-19459437:+|nuORF	REV__ENST00000510738.2_1_12:19413894-19459437:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	518.7623901367188	2	518.762155	1035.50976	0.26839	0.00013923	0.77776	0.00040347	1.0461	0.0005427	518.7623872630363	21.724	0.47297	21.742	21.483	21.956	0.018446					16	8	3	0	0	0	0.71077	1	7620	7620		21.747	6.9084	1	8108600	+		10140	10625	5794	5832	9793	9793					-0.006577863647407867
ESSAVTYPEAP	11	Unmodified	_ESSAVTYPEAP_					0	0	0		ENST00000463247.1_1_7:135300694-135300790:+|nuORF	ENST00000463247.1_1_7:135300694-135300790:+|nuORF	ENST00000463247.1_1_7:135300694-135300790:+|nuORF	MSMS	HCT116MG_D190212_S2	2	575.7691040039062	2	575.766768	1149.51898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.813	1	14.494	13.994	14.994	-0.31952								0	0	0	0.95113	1	4877	4877		5.7319	0.97584	1				10141	8073	5795	5833	9794	9794					-0.049794825897151895
ESSCCCPTTC	10	Unmodified	_ESSCCCPTTC_					0	0	0		ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	ENST00000485071.2_1_7:100170790-100171357:-|nuORF	MSMS	HCT116MG_D190212_S2	2	517.1598510742188	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3358	1	4.2467	3.7467	4.7467	-0.089082								0	0	0	0.96937	1	1374	1374		0.40072	0.40072	1				10142	8283	5796	5834	9795	9795					-0.21278564002432176
ESSCSSQAGP	10	Unmodified	_ESSCSSQAGP_					0	0	0			REV__nc|ENSG00000074047|P10070-2|GLI2	REV__nc|ENSG00000074047|P10070-2|GLI2	MULTI-MSMS	HCT116MG_D190212_S1	1	476.6883850097656	2	476.687464	951.360375	0.36721	0.00017505	0.3172	0.00015121	0.68441	0.00032625	476.68766585499486	17.629	0.9908	17.629	17.359	18.35	0					22	18	2	0	0	0	0.68623	1	6004	6004		21.537	3.3906	1	3070700	+		10143	10795	5797	5835	9796	9796					-0.11725099769626013
ESSCSSQAGP	10	Unmodified	_ESSCSSQAGP_					0	0	0			REV__nc|ENSG00000074047|P10070-2|GLI2	REV__nc|ENSG00000074047|P10070-2|GLI2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	476.687464	951.360375	0.36721	0.00017505	0.3172	0.00015121	0.68441	0.00032625	476.68766585499486	17.629	0.9908	17.629	17.359	18.35	0	0.031672	-0.00017593	NaN	21.537	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3070700	+		10144	10795	5797	5835							-0.11725099769626013
ESSCSSQAGP	10	Unmodified	_ESSCSSQAGP_					0	0	0			REV__nc|ENSG00000074047|P10070-2|GLI2	REV__nc|ENSG00000074047|P10070-2|GLI2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	476.687464	951.360375	0.16332	7.7853E-05	0.53366	0.00025439	0.69698	0.00033224	476.6876552447342	17.922	0.94019	17.565	17.284	18.224	-0.35647	-0.031672	3.0431E-05	NaN	21.537	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13830000	+		10145	10795	5797	5835							-0.11725099769626013
ESSILAQRR	9	Unmodified	_ESSILAQRR_					0	0	0		nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1	nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-3|RPS6KA1	MSMS	HCT116MG_D190212_S2	2	529.95361328125	2	530.298904	1058.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.148	1	50.969	50.469	51.469	-0.17868								0	0	0	0.53872	1	19617	19617		26.884	3.7352	1				10146	2584	5798	5836	9797	9797					0.05630762077748841
ESSIQIRYIKY	11	Unmodified	_ESSIQIRYIKY_					0	0	0		tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	tr|U7STU9|U7STU9_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00990PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	700.3818359375	2	700.382634	1398.75072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.994	1	23.994	23.494	24.494	0								0	0	0	0.95113	1	8570	8570		5.7319	0	1				10147	18454	5799	5837	9798	9798					0.06728984831852358
ESSKLLLR	8	Unmodified	_ESSKLLLR_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-MSMS	HCT116MG_D190212_S1	1	473.2896423339844	2	473.290017	944.565481	0.19563	9.2589E-05	-0.047239	-2.2358E-05	0.14839	7.0231E-05	473.2898437252889	22.938	0.20816	22.938	22.845	23.054	0					5	3	2	0	0	0	0.7524	1	8180	8180		16.942	1.0951	1	2846900	+		10148	12175	5800	5838	9799	9799					0.0909804682290769
ESSKTSKPHKV	11	Unmodified	_ESSKTSKPHKV_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1;MLLT1|p.Q461Rfs*46|2|0.33|ENSG00000130382|chr19:6213965-6213965|G/-|frameshift_variant	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MSMS	HCT116MG_D190212_S3	3	614.4876098632812	2	614.338227	1226.6619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.806	1	42.501	42.001	43.001	-0.30472								0	0	0	0.95113	1	15957	15957		5.7319	2.1354	1				10149	3076	5801	5839	9800	9800					0.05763569592181739
ESSLGTALP	9	Unmodified	_ESSLGTALP_					0	0	0		nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	MSMS	HCT116MG_D190212_S1	1	437.7288818359375	2	437.729458	873.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.574	1	25.574	25.074	26.074	0								0	0	0	0.3563	1	9205	9205		36.044	0	1				10150	9600	5802	5840	9801	9801					0.002577993895556574
ESSMEASW	8	Unmodified	_ESSMEASW_					0	0	0		ENST00000532148.5_1_14:61447983-61468748:+|nuORF	ENST00000532148.5_1_14:61447983-61468748:+|nuORF	ENST00000532148.5_1_14:61447983-61468748:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	463.68182373046875	2	463.68165	925.348747	0.023778	1.1026E-05	-0.3932	-0.00018232	-0.36942	-0.00017129	463.68140294962944	36.331	0.41597	36.03	35.729	36.145	-0.30042					11	7	2	0	0	0	0.69862	1	13434	13434		23.148	7.3012	1	4026100			10151	8632	5803	5841	9802	9802					-0.11691296792969297
ESSQPHFQ	8	Unmodified	_ESSQPHFQ_					0	0	0			REV__ENST00000242059.9_1_7:29962612-29962699:-|nuORF	REV__ENST00000242059.9_1_7:29962612-29962699:-|nuORF	MSMS	HCT116MG_D190212_S3	3	480.2164306640625	2	480.214506	958.414459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.98	1	18.057	17.557	18.557	0.076334								0	0	0	0.71912	1	6077	6077		29.082	3.6823	1		+		10152	14563	5804	5842	9803	9803					-0.06641139555756581
ESSRFLNFDV	10	Unmodified	_ESSRFLNFDV_					0	0	0		ENST00000577760.1_1_17:37009503-37009626:-|nuORF	ENST00000577760.1_1_17:37009503-37009626:-|nuORF	ENST00000577760.1_1_17:37009503-37009626:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	607.7982788085938	2	607.296027	1212.5775	0.63075	0.00038305	-0.026036	-1.5812E-05	0.60471	0.00036724	607.7973682930477	27.612	1.1969	27.423	26.424	27.621	-0.18847					31	22	3	0	0	0	0.30788	1	10025	10025		5.2969	0	1	4883600			10153	8935	5805	5843	9804	9804					-0.020283812245679655
ESSTSSTHSLR	11	Unmodified	_ESSTSSTHSLR_					0	0	0			REV__FRMD4A|p.D954E|1|0.17|ENSG00000151474|chr10:13656727-13656727|G/C|missense_variant	REV__FRMD4A|p.D954E|1|0.17|ENSG00000151474|chr10:13656727-13656727|G/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	596.7876586914062	2	596.283648	1190.55274	1.0483	0.0006251	2.6675	0.0015906	3.7158	0.0022157	596.2850459457027	27.823	0.35397	27.501	27.252	27.606	-0.32157					8	6	2	0	0	0	0.71532	1	9964	9964		16.149	1.7437	1	2568700	+		10154	16838	5806	5844	9805	9805					-0.03491061097952297
ESSVDMPELEK	11	Unmodified	_ESSVDMPELEK_					0	0	0			REV__SLC1A1|p.Q472P|1|0.37|ENSG00000106688|chr9:4585398-4585398|A/C|missense_variant	REV__SLC1A1|p.Q472P|1|0.37|ENSG00000106688|chr9:4585398-4585398|A/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	632.2923583984375	2	632.292293	1262.57003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.157	1	36.773	36.273	37.273	-0.38433								0	0	0	0.92235	1	13625	13625		17.113	2.2746	1		+		10155	17521	5807	5845	9806	9806					-0.05074901607167703
ESSVRVYTFDI	11	Unmodified	_ESSVRVYTFDI_					0	0	0			REV__ENSG00000123395|ENST00000336854|ATG101	REV__ENSG00000123395|ENST00000336854|ATG101	MSMS	HCT116MG_D190212_S1	1	658.330078125	2	658.330067	1314.64558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.084	1	40.084	39.584	40.584	0								0	0	0	0.9465	1	15056	15056		8.1555	2.4237	1		+		10156	11762	5808	5846	9807	9807					0.0008444363543276268
ESTDEERYRDR	11	Unmodified	_ESTDEERYRDR_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	728.3258666992188	2	728.326576	1454.6386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.551	1	16.209	15.709	16.709	-0.34183								0	0	0	0.94416	1	5577	5577		9.3831	4.0862	1		+		10157	13009	5809	5847	9808	9808					-0.07053520983095041
ESTGFLRW	8	Unmodified	_ESTGFLRW_					0	0	0			REV__ENST00000498143.5_1_10:75335378-75335680:-|nuORF	REV__ENST00000498143.5_1_10:75335378-75335680:-|nuORF	MSMS	HCT116MG_D190212_S2	2	498.24884033203125	2	498.250892	994.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.609	1	14.29	13.79	14.79	-0.31952								0	0	0	0.87079	1	4795	4795		16.942	2.104	1		+		10158	16106	5810	5848	9809	9809					-0.01023385762334783
ESTHPLLVA	9	Unmodified	_ESTHPLLVA_					0	0	0		ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	MULTI-MSMS	HCT116MG_D190212_S3	3	483.76702880859375	2	483.766374	965.518196	0.11259	5.4466E-05	0.12627	6.1085E-05	0.23886	0.00011555	483.76632560167667	23.878	0.41707	23.817	23.634	24.051	-0.061449					20	7	4	0	0	0	0.17018	1	8437	8437		44.407	0	1	54075000			10159	4830	5811	5849	9810	9810					0.03405767551907957
ESTIIKRLFR	10	Unmodified	_ESTIIKRLFR_					0	0	0			REV__ACSS1|p.L647F|1|0.12|ENSG00000154930|chr20:25007893-25007893|G/A|missense_variant	REV__ACSS1|p.L647F|1|0.12|ENSG00000154930|chr20:25007893-25007893|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	631.884033203125	2	631.882604	1261.75066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.608	1	37.505	37.005	38.005	-0.10318								0	0	0	0.92607	1	14103	14103		10.074	5.8844	1		+		10160	9838	5812	5850	9811	9811					0.13025029622508555
ESTIRCTSDPQ	11	Unmodified	_ESTIRCTSDPQ_					0	0	0		ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;nc|ENSG00000203710|P17927|CR1;CR1|p.P1583Lfs*44|1|0.22|ENSG00000203710|chr1:207609487-207609487|C/-|frameshift_variant;ENSG00000203710|ENST00000367049|CR1	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	MSMS	HCT116MG_D190212_S4	4	618.778564453125	2	618.779884	1235.54522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.607	1	18.427	17.927	18.927	-0.18052								0	0	0	0.94416	1	6257	6257		9.3831	0.63772	1				10161	598	5813	5851	9812	9812					-0.06313536689890498
ESTKSQFGSPG	11	Unmodified	_ESTKSQFGSPG_					0	0	0		HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	562.7649536132812	2	562.76456	1123.51457	0.21419	0.00012054	0.26977	0.00015182	0.48396	0.00027235	562.764786794106	26.751	0.77949	26.45	25.922	26.701	-0.30087					16	14	2	0	0	0	0.6977	1	9557	9557		22.658	3.9369	1	2632800			10162	2957	5814	5852	9813	9813					-0.04224947012630764
ESTLHRYEV	9	Unmodified	_ESTLHRYEV_					0	0	0		nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	MULTI-MSMS	HCT116MG_D190212_S3	3	567.767822265625	2	567.28292	1132.55129	0.45837	0.00026003	-0.10374	-5.885E-05	0.35463	0.00020118	567.2827850278323	27.107	0.41675	26.938	26.703	27.12	-0.16933					12	7	2	0	0	0	0.2682	1	9773	9773		34.102	1.3168	1	4988400			10163	3786	5815	5853	9814	9814					-0.009686503960665505
ESTNCPYYNEY	11	Unmodified	_ESTNCPYYNEY_					0	0	0		OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant;nc|ENSG00000115155|Q9HC10-5|OTOF;ENSG00000115155|ENST00000272371|OTOF	OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant	OTOF|p.N1149Rfs*28|1|0.56|ENSG00000115155|chr2:26473530-26473531|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	691.7647094726562	2	691.7639	1381.51325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.943	1	18.756	18.256	19.256	-0.18674								0	0	0	0.95113	1	6392	6392		5.7319	2.4505	1				10164	2446	5816	5854	9815	9815					-0.16224949163688507
ESTPGPPA	8	Unmodified	_ESTPGPPA_					0	0	0			REV__nc|ENSG00000078053|P49418-2|AMPH	REV__nc|ENSG00000078053|P49418-2|AMPH	MULTI-MSMS	HCT116MG_D190212_S3	3	755.3576049804688	1	755.35701	754.349734	0.53105	0.00040113	0.15448	0.00011669	0.68553	0.00051782	755.3569388534556	24.858	2.1878	24.774	22.987	25.174	-0.083694					73	41	3	0	0	0	0.23352	2	8259	8259;8729		67.035	17.366	1	10847000	+		10165	10832	5817	5855	9816;9817	9816					-0.03726714361766881
ESTPGPPA	8	Unmodified	_ESTPGPPA_					0	0	0			REV__nc|ENSG00000078053|P49418-2|AMPH	REV__nc|ENSG00000078053|P49418-2|AMPH	MULTI-SECPEP	HCT116MG_D190212_S3	3	756.0223388671875	1	755.35701	754.349734	0.53105	0.00040113	0.15448	0.00011669	0.68553	0.00051782	755.3569388534556	24.858	2.1878	24.774	22.987	25.174	-0.083694					73	41	3	0	0	0	0.081322	1	8342	8342		90.836	31.041	1	10847000	+		10166	10832	5817	5855	9818	9818					-0.03726714361766881
ESTPGPPA	8	Unmodified	_ESTPGPPA_					0	0	0			REV__nc|ENSG00000078053|P49418-2|AMPH	REV__nc|ENSG00000078053|P49418-2|AMPH	MULTI-MSMS	HCT116MG_D190212_S4	4	755.3570556640625	1	755.35701	754.349734	1.0012	0.00075629	-0.033289	-2.5145E-05	0.96795	0.00073115	755.3566390668612	24.856	2.2366	24.587	22.884	25.121	-0.26881					71	42	3	0	0	0	0.23352	2	8247	8098;8247		67.035	17.366	1	11601000	+		10167	10832	5817	5855	9819;9820	9820					-0.03726714361766881
ESTQQEHEDA	10	Unmodified	_ESTQQEHEDA_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MSMS	HCT116MG_D190212_S3	3	587.23779296875	2	587.236364	1172.45817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.223	1	23.183	22.683	23.683	-0.03968								0	0	0	0.90475	1	8188	8188		14.838	0.93222	1				10168	936	5818	5856	9821	9821					-0.12115619639939723
ESTVDKKCFAD	11	Unmodified	_ESTVDKKCFAD_					0	0	0		RTN4|p.K419T|1|0.26|ENSG00000115310|chr2:55026843-55026843|T/G|missense_variant	RTN4|p.K419T|1|0.26|ENSG00000115310|chr2:55026843-55026843|T/G|missense_variant	RTN4|p.K419T|1|0.26|ENSG00000115310|chr2:55026843-55026843|T/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	621.7694091796875	2	621.787178	1241.5598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.66	1	17.487	16.987	17.987	-0.17318								0	0	0	0.9387	1	5874	5874		12.241	0.74595	1				10169	18131	5819	5857	9822	9822					-0.051314645417505744
ESTYSKSGP	9	Unmodified	_ESTYSKSGP_					0	0	0		CTNND2|p.P515T|1|0.36|ENSG00000169862|chr5:11346457-11346457|G/T|missense_variant	CTNND2|p.P515T|1|0.36|ENSG00000169862|chr5:11346457-11346457|G/T|missense_variant	CTNND2|p.P515T|1|0.36|ENSG00000169862|chr5:11346457-11346457|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	478.2219543457031	2	478.221997	954.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.447	1	32.067	31.567	32.567	-0.37924								0	0	0	0.71969	1	11818	11818		18.135	0	1				10170	614	5820	5858	9823	9823					-0.04959692478405486
ESVCLTEWYT	10	Unmodified	_ESVCLTEWYT_					0	0	0			REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF	REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	615.7725830078125	2	615.770997	1229.52744	0.38303	0.00023586	-0.07747	-4.7704E-05	0.30556	0.00018816	615.7709631894559	15.53	1.0927	15.616	14.988	16.081	0.085423					33	20	2	0	0	0	0.86862	1	5201	5201		6.2058	0.47393	1	3117400	+		10171	15649	5821	5859	9824	9824					-0.0781425194475105
ESVDQHGPPQ	10	Unmodified	_ESVDQHGPPQ_					0	0	0			REV__ENST00000475684.2_1_6:31124506-31125946:-|nuORF	REV__ENST00000475684.2_1_6:31124506-31125946:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	548.2576293945312	2	547.249077	1092.4836	0.5421	0.00029666	0.058641	3.2091E-05	0.60074	0.00032875	547.2488354923364	20.089	0.67085	19.896	19.533	20.204	-0.19368					25	12	3	0	0	0	0.77749	1	6797	6797		13.906	3.0821	1	5279700	+		10172	14200	5822	5860	9825	9825					-0.058941003268500936
ESVEFLRDP	9	Unmodified	_ESVEFLRDP_					0	0	0		ENST00000356810.5_1_20:62289730-62290707:+|nuORF	ENST00000356810.5_1_20:62289730-62290707:+|nuORF	ENST00000356810.5_1_20:62289730-62290707:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	364.84881591796875	3	364.517106	1090.52949	-0.24973	-9.1032E-05	-2.9389	-0.0010713	-3.1886	-0.0011623	364.8500413730993	21.285	0.88481	20.902	20.233	21.117	-0.38288					53	16	5	0	0	0	0.2853	1	7478	7478		23.79	1.1317	1	170250000			10173	7302	5823	5861	9826	9826					-0.012154551446201367
ESVERLPQYPQ	11	Unmodified	_ESVERLPQYPQ_					0	0	0			REV__ENST00000547003.1_1_12:49916566-49919899:+|nuORF	REV__ENST00000547003.1_1_12:49916566-49919899:+|nuORF	MSMS	HCT116MG_D190212_S3	3	673.3396606445312	2	673.340966	1344.66738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.305	1	36.004	35.504	36.504	-0.30042								0	0	0	0.88801	1	13410	13410		21.537	0	1		+		10174	16405	5824	5862	9827	9827					0.008832483840023997
ESVFENYYVIY	11	Unmodified	_ESVFENYYVIY_					0	0	0		FGF14|p.L173Wfs*3|1|0.36|ENSG00000102466|chr13:101726701-101726701|A/-|frameshift_variant;ENSG00000114279|ENST00000445105|FGF12;nc|ENSG00000114279|P61328|FGF12;ENSG00000102466|ENST00000376143|FGF14;nc|ENSG00000102466|Q92915-2|FGF14	FGF14|p.L173Wfs*3|1|0.36|ENSG00000102466|chr13:101726701-101726701|A/-|frameshift_variant	FGF14|p.L173Wfs*3|1|0.36|ENSG00000102466|chr13:101726701-101726701|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	713.3303833007812	2	713.332276	1424.65	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.047	1	24.768	24.268	25.268	-0.27958								0	0	0	0.94416	1	8857	8857		9.3831	0	1				10175	1841	5825	5863	9828	9828					-0.045340919416730685
ESVNDAQKA	9	Unmodified	_ESVNDAQKA_					0	0	0		ENST00000440689.1_1_1:111494904-111495009:+|nuORF	ENST00000440689.1_1_1:111494904-111495009:+|nuORF	ENST00000440689.1_1_1:111494904-111495009:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	482.20477294921875	2	481.232896	960.451239	0.059255	2.8515E-05	3.2032	0.0015415	3.2624	0.00157	481.2328909111819	10.423	0.6511	10.153	9.9231	10.574	-0.27021					60	30	3	0	0	0	0.67781	1	3259	3259		6.7232	1.4925	1	596210			10176	7919	5826	5864	9829	9829					-0.030568877298605912
ESVPVHSP	8	Unmodified	_ESVPVHSP_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	HCT116MG_D190212_S4	4	426.2165222167969	2	426.216517	850.418482	0.073371	3.1272E-05	0.033433	1.425E-05	0.1068	4.5522E-05	426.2164609482051	32.271	0.41516	31.894	31.64	32.055	-0.37686					11	7	2	0	0	0	0.6854	1	11769	11769		24.674	5.2349	1	2057400	+		10177	10801	5827	5865	9830	9830					-0.012710500620414678
ESVQESQSP	9	Unmodified	_ESVQESQSP_					0	0	0			REV__ENST00000469714.1_1_X:17092694-17165601:+|nuORF	REV__ENST00000469714.1_1_X:17092694-17165601:+|nuORF	MSMS	HCT116MG_D190212_S3	3	495.7217712402344	2	495.722361	989.430169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.622	1	36.32	35.82	36.82	-0.30113								0	0	0	0.76575	1	13538	13538		15.847	0	1		+		10178	13268	5828	5866	9831	9831					-0.06496897829356385
ESVRAELP	8	Unmodified	_ESVRAELP_					0	0	0			REV__nc|ENSG00000196588|Q969V6|MRTFA	REV__nc|ENSG00000196588|Q969V6|MRTFA	MULTI-MSMS	HCT116MG_D190212_S2	2	450.7425842285156	2	450.742899	899.471246	0.18927	8.5314E-05	-0.27512	-0.00012401	-0.085844	-3.8694E-05	450.7427233425365	23.552	1.3006	23.169	22.988	24.288	-0.38324					36	24	2	0	0	0	0.19608	1	8409	8409		74.423	10.186	1	15217000	+		10179	14036	5829	5867	9832	9832					0.017489080007635494
ESVRAELP	8	Unmodified	_ESVRAELP_					0	0	0			REV__nc|ENSG00000196588|Q969V6|MRTFA	REV__nc|ENSG00000196588|Q969V6|MRTFA	MULTI-MSMS	HCT116MG_D190212_S3	3	450.7427062988281	2	450.742899	899.471246	0.040346	1.8186E-05	0.13322	6.0048E-05	0.17357	7.8233E-05	450.7428913168634	22.955	1.4987	22.936	22.751	24.25	-0.018869					51	28	2	0	0	0	0.19608	1	8312	8312		74.423	19.649	1	16303000	+		10180	14036	5829	5867	9833	9833					0.017489080007635494
ESVSNAIAA	9	Unmodified	_ESVSNAIAA_					0	0	0		tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	431.21942138671875	2	431.219257	860.423961	0.0032782	1.4136E-06	0.24285	0.00010472	0.24612	0.00010613	431.21926758831364	20.758	0.31228	20.792	20.61	20.923	0.034473					8	5	2	0	0	0	0.16306	1	7204	7204		45.7	7.7256	1	4472900			10181	18300	5830	5868	9834	9834					-0.011833712702468802
ESVSNAIAA	9	Unmodified	_ESVSNAIAA_					0	0	0		tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	tr|U7SGQ2|U7SGQ2_FUSNUDNAmismatchrepairproteinMutLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mutLPE=3SV=1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	431.219257	860.423961	-0.05339	-2.3023E-05	0.62037	0.00026752	0.56698	0.00024449	431.2195034349293	21.487	0.15632	21.103	21.013	21.169	-0.3834	0.15551	0.00016585	NaN	45.7	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5905400			10182	18300	5830	5868							-0.011833712702468802
ESWIREQT	8	Unmodified	_ESWIREQT_					0	0	0		nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1;nc|ENSG00000164828|O94901-3|SUN1;ENST00000340926.7_1_7:872152-889323:+|nuORF;ENST00000413171.6_1_7:872152-892516:+|nuORF;nc|ENSG00000164828|O94901-6|SUN1;ENST00000427969.5_1_7:878456-882177:+|nuORF	nc|ENSG00000164828|O94901-5|SUN1	nc|ENSG00000164828|O94901-5|SUN1	MULTI-MSMS	HCT116MG_D190212_S2	2	524.7569580078125	2	524.756538	1047.49852	0.34037	0.00017861	0.14004	7.3488E-05	0.48041	0.0002521	524.7565294680411	23.511	0.25962	23.128	22.988	23.247	-0.38324					8	4	3	0	0	0	0.79062	1	8412	8412		12.532	0.89125	1	10866000			10183	4723	5831	5869	9835	9835					-0.023326084588461526
ESWQGTYREEE	11	Unmodified	_ESWQGTYREEE_					0	0	0			REV__nc|ENSG00000292373|Q01113-3|IL9R	REV__nc|ENSG00000292373|Q01113-3|IL9R	MSMS	HCT116MG_D190212_S4	4	707.3005981445312	2	707.299495	1412.58444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.311	1	24.053	23.553	24.553	-0.25816								0	0	0	0.67149	1	8559	8559		39.95	17.213	1		+		10184	11784	5832	5870	9836	9836					-0.10535113134642415
ESYKKKISPK	10	Unmodified	_ESYKKKISPK_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MSMS	HCT116MG_D190212_S1	1	604.3551635742188	2	604.355888	1206.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.163	1	37.163	36.663	37.663	0								0	0	0	0.93202	1	13876	13876		8.7454	0	1				10185	1717	5833	5871	9837	9837					0.10214232119983535
ESYKYKVQHEL	11	Unmodified	_ESYKYKVQHEL_					0	0	0			REV__XPOT|p.F594Lfs*9|1|0.32|ENSG00000184575|chr12:64430089-64430089|T/-|frameshift_variant	REV__XPOT|p.F594Lfs*9|1|0.32|ENSG00000184575|chr12:64430089-64430089|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	712.3626708984375	2	712.364441	1422.71433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.716	1	18.785	18.285	19.285	0.069159								0	0	0	0.94538	1	6374	6374		8.7454	2.5396	1		+		10186	13807	5834	5872	9838	9838					0.019881079351534936
ESYRRLNT	8	Unmodified	_ESYRRLNT_					0	0	0		sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1;sp|P16756|UL14_HCMVAUncharacterizedproteinUL14OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL14PE=3SV=2	sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7700805664062	2	519.76998	1037.52541	0.17443	9.0666E-05	0.043992	2.2866E-05	0.21843	0.00011353	519.769976323245	11.459	1.3624	11.178	10.587	11.95	-0.28186					115	53	3	0	0	0	0.8672	1	3512	3512		2.3027	0.4585	1	3494900			10187	18212	5835	5873	9839	9839					0.008145001523189421
ETAGIPSTFE	10	Unmodified	_ETAGIPSTFE_					0	0	0		ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	526.2527465820312	2	526.250754	1050.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.547	1	31.547	31.047	32.047	0								0	0	0	0.82636	1	11611	11611		25.399	2.2509	1				10188	6012	5836	5874	9840	9840					-0.03626850272848969
ETALFVKYKIH	11	Unmodified	_ETALFVKYKIH_					0	0	0		ENST00000555032.1_1_14:96106392-96108182:+|nuORF	ENST00000555032.1_1_14:96106392-96108182:+|nuORF	ENST00000555032.1_1_14:96106392-96108182:+|nuORF	MSMS	HCT116MG_D190212_S1	1	674.7376098632812	2	674.884813	1347.75507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.554	1	51.554	51.054	52.054	0								0	0	0	0.95113	1	19700	19700		5.7319	2.7366	1				10189	8784	5837	5875	9841	9841					0.09510494045412088
ETAQSGGGDQ	10	Unmodified	_ETAQSGGGDQ_					0	0	0			REV__CD101|p.P656Rfs*10|1|0.34|ENSG00000134256|chr1:117018505-117018505|C/-|frameshift_variant	REV__CD101|p.P656Rfs*10|1|0.34|ENSG00000134256|chr1:117018505-117018505|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	475.2469787597656	2	475.19651	948.378468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.754	1	26.402	25.902	26.902	-0.35254								0	0	0	0.90475	1	9693	9693		14.838	0.25658	1		+		10190	10127	5838	5876	9842	9842					-0.09778641523257647
ETARHQSP	8	Unmodified	_ETARHQSP_					0	0	0		ENST00000444037.1_1_1:204597468-204597525:+|nuORF	ENST00000444037.1_1_1:204597468-204597525:+|nuORF	ENST00000444037.1_1_1:204597468-204597525:+|nuORF	MSMS	HCT116MG_D190212_S3	3	463.2283935546875	2	463.227948	924.441343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.343	1	23.303	22.803	23.803	-0.03968								0	0	0	0.8837	1	8237	8237		5.2307	0	1				10191	7940	5839	5877	9843	9843					-0.023900309445707535
ETARKFLYY	9	Unmodified	_ETARKFLYY_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2;ENST00000464846.5_1_2:157427687-157435520:+|nuORF	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	HCT116MG_D190212_S1	1	595.813720703125	2	595.813856	1189.61316	0.18048	0.00010753	-0.12596	-7.5052E-05	0.054516	3.2481E-05	595.8136948092887	38.809	0.2588	38.809	38.644	38.903	0					6	4	2	0	0	0	0.045679	1	14550	14550		76.825	38.851	1	25201000			10192	2447	5840	5878	9844	9844					0.025937010231018576
ETARKFLYY	9	Unmodified	_ETARKFLYY_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2;ENST00000464846.5_1_2:157427687-157435520:+|nuORF	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	HCT116MG_D190212_S2	2	596.3145751953125	2	595.813856	1189.61316	0.56414	0.00033612	-0.25729	-0.0001533	0.30684	0.00018282	595.8137009437808	38.807	0.31307	38.722	38.544	38.857	-0.084621					16	5	4	0	0	0	0.030039	1	14579	14579		86.332	48.358	1	81890000			10193	2447	5840	5878	9845	9845					0.025937010231018576
ETARKFLYY	9	Unmodified	_ETARKFLYY_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2;ENST00000464846.5_1_2:157427687-157435520:+|nuORF	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	HCT116MG_D190212_S3	3	596.5825805664062	2	595.813856	1189.61316	0.5655	0.00033693	0.58976	0.00035139	1.1553	0.00068832	595.814297513062	39.043	0.25935	38.742	38.613	38.872	-0.30137					6	4	2	0	0	0	0.047849	2	14496	14496;14511		75.761	39.634	1	5867100			10194	2447	5840	5878	9846;9847	9846					0.025937010231018576
ETASPICLH	9	Unmodified	_ETASPICLH_					0	0	0			REV__ENST00000590413.5_1_1:110925619-110954860:+|nuORF	REV__ENST00000590413.5_1_1:110925619-110954860:+|nuORF	MSMS	HCT116MG_D190212_S2	2	485.73883056640625	2	485.73676	969.458967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.354	1	35.211	34.711	35.711	-0.14245								0	0	0	0.74436	1	13185	13185		16.942	1.6938	1		+		10195	15760	5841	5879	9848	9848					-0.02698451733931506
ETATSFKMYL	10	Unmodified	_ETATSFKMYL_					0	0	0		nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;MBOAT1|p.L444Wfs*20|1|0.1|ENSG00000172197|chr6:20109628-20109628|A/-|frameshift_variant;ENSG00000172197|ENST00000324607|MBOAT1	nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	MSMS	HCT116MG_D190212_S1	1	595.7894897460938	2	595.791732	1189.56891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.107	1	38.107	37.607	38.607	0								0	0	0	0.90023	1	14257	14257		15.847	1.0089	1				10196	5240	5842	5880	9849	9849					-0.01829071185397879
ETCGASFVR	9	Unmodified	_ETCGASFVR_					0	0	0		nc|ENSG00000020256|Q9NTW7|ZFP64;nc|ENSG00000020256|Q9NTW7-2|ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	MSMS	HCT116MG_D190212_S3	3	485.2444763183594	2	485.226559	968.438566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.774	1	45.463	44.963	45.963	-0.31094								0	0	0	0.74436	1	17148	17148		16.942	1.0951	1				10197	9368	5843	5881	9850	9850					-0.04691622393727357
ETCLATGPAS	10	Unmodified	_ETCLATGPAS_					0	0	0			REV__nc|ENSG00000157890|A6BM72-2|MEGF11	REV__nc|ENSG00000157890|A6BM72-2|MEGF11	MULTI-MSMS	HCT116MG_D190212_S2	2	475.21917724609375	2	475.2184	948.422247	0.18878	8.9713E-05	0.86488	0.00041101	1.0537	0.00050072	475.21913782734583	23.531	0.31137	23.148	22.988	23.299	-0.38324					8	5	2	0	0	0	0.4604	1	8413	8413		37.974	1.9298	1	8864800	+		10198	17177	5844	5882	9851	9851					-0.05402748350491038
ETCLATGPAS	10	Unmodified	_ETCLATGPAS_					0	0	0			REV__nc|ENSG00000157890|A6BM72-2|MEGF11	REV__nc|ENSG00000157890|A6BM72-2|MEGF11	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	475.2184	948.422247	0.18878	8.9713E-05	0.86488	0.00041101	1.0537	0.00050072	475.21913782734583	23.531	0.31137	23.148	22.988	23.299	-0.38324	0.08723	0.00062856	NaN	37.974	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8864800	+		10199	17177	5844	5882							-0.05402748350491038
ETDAQSITY	9	Unmodified	_ETDAQSITY_					0	0	0		nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	nc|ENSG00000160767|P81408-2|ENTREP3	nc|ENSG00000160767|P81408-2|ENTREP3	MULTI-MSMS	HCT116MG_D190212_S3	3	1027.45849609375	1	1027.45785	1026.45057	0.84269	0.00086583	0.29275	0.00030079	1.1354	0.0011666	1027.4580362642068	32.871	0.20853	32.586	32.404	32.612	-0.28511					6	3	2	0	0	0	0.049545	1	12067	12067		74.929	27.18	1	4836900			10200	4463	5845	5883	9852	9852					-0.06159727169551843
ETDAQSITY	9	Unmodified	_ETDAQSITY_					0	0	0		nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	nc|ENSG00000160767|P81408-2|ENTREP3	nc|ENSG00000160767|P81408-2|ENTREP3	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1027.45785	1026.45057	0.68456	0.00070336	-0.48859	-0.00050201	0.19597	0.00020135	1027.4590615770448	32.821	0.15572	32.442	32.364	32.52	-0.37924	-0.072012	-0.00076303	NaN	74.929	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	991410			10201	4463	5845	5883							-0.06159727169551843
ETDCEHVQP	9	Unmodified	_ETDCEHVQP_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.97705078125	2	529.216388	1056.41822	0.46242	0.00024472	0.01589	8.4091E-06	0.47831	0.00025313	529.2162595083785	23.636	0.83085	23.253	22.988	23.819	-0.38324					25	15	2	0	0	0	0.22781	1	8343	8343		7.2892	0	1	7497600			10202	1427	5846	5884	9853	9853					-0.10772837844206151
ETDEKDFYLY	10	Unmodified	_ETDEKDFYLY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S2	2	661.7935791015625	2	661.792983	1321.57141	0.66197	0.00043809	0.053488	3.5398E-05	0.71546	0.00047349	661.7929537580693	46.541	0.61782	46.43	46.162	46.78	-0.11121					22	11	4	0	0	0	0.025294	1	17719	17719		110.79	40.461	1	76871000			10203	1532	5847	5885	9854	9854					-0.0765094424673407
ETDEKDFYLY	10	Unmodified	_ETDEKDFYLY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S3	3	661.7940063476562	2	661.792983	1321.57141	0.85251	0.00056419	-0.11773	-7.7914E-05	0.73478	0.00048627	661.7928496780715	46.778	0.36479	46.464	46.281	46.646	-0.31405					17	6	3	0	0	0	0.019498	1	17534	17534		121.35	41.75	1	44202000			10204	1532	5847	5885	9855	9855					-0.0765094424673407
ETDEKDFYLY	10	Unmodified	_ETDEKDFYLY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S4	4	661.7933349609375	2	661.792983	1321.57141	0.7741	0.00051229	-0.15415	-0.00010202	0.61994	0.00041027	661.7928493168891	46.849	0.36335	46.477	46.328	46.692	-0.37134					16	6	4	0	0	0	0.027339	1	17305	17305		107.1	36.768	1	18694000			10205	1532	5847	5885	9856	9856					-0.0765094424673407
ETDEKDFYLYY	11	Unmodified	_ETDEKDFYLYY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S2	2	743.3264770507812	2	743.324647	1484.63474	0.77805	0.00057835	1.2384	0.00092053	2.0164	0.0014989	743.3254245101338	50.087	0.25557	49.923	49.789	50.044	-0.16369					11	4	3	0	0	0	0.034456	1	19195	19195		110.79	89.256	1	46276000			10206	1532	5848	5886	9857	9857					-0.08819003529492875
ETDEKDFYLYY	11	Unmodified	_ETDEKDFYLYY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S3	3	743.3251342773438	2	743.324647	1484.63474	0.38619	0.00028706	0.41683	0.00030984	0.80302	0.0005969	743.3247733826407	50.256	0.20852	49.94	49.81	50.019	-0.31525					6	3	2	0	0	0	0.2665	1	18975	18975		67.838	58.455	1	9446600			10207	1532	5848	5886	9858	9858					-0.08819003529492875
ETDEQRLRDEY	11	Unmodified	_ETDEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MSMS	HCT116MG_D190212_S1	1	727.3323974609375	2	727.331327	1452.6481	1.0448	0.0007599	-0.35431	-0.0002577	0.69046	0.00050219	727.3309755351896	28.402	0.21327	28.402	28.268	28.482	0					6	3	2	0	0	0	0.019496	1	10363	10363		164.85	133.58	1	12980000			10208	1962	5849	5887	9859	9859					-0.06011752697554584
ETDEQRLRDEY	11	Unmodified	_ETDEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MSMS	HCT116MG_D190212_S1	1	485.22357177734375	3	485.22331	1452.6481	0.49519	0.00024028	-0.02646	-1.2839E-05	0.46873	0.00022744	485.2231942075987	28.402	0.21327	28.402	28.268	28.482	0					5	3	2	0	0	0	0.70594	1	10375	10375		19.615	15.499	1	13417000			10209	1962	5849	5887	9860	9860					-0.06011752697554584
ETDEQRLRDEY	11	Unmodified	_ETDEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MSMS	HCT116MG_D190212_S2	2	727.330810546875	2	727.331327	1452.6481	0.95512	0.00069469	-0.50077	-0.00036423	0.45435	0.00033046	727.3305044075437	28.693	0.20397	28.377	28.249	28.453	-0.31613					9	3	3	0	0	0	7.5768E-06	1	10481	10481		205.73	167.56	1	65067000			10210	1962	5849	5887	9861	9861					-0.06011752697554584
ETDEQRLRDEY	11	Unmodified	_ETDEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MSMS	HCT116MG_D190212_S3	3	727.3313598632812	2	727.331327	1452.6481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.866	1	28.644	28.144	29.144	-0.22195								0	0	0	0.93254	1	10464	10464		18.721	10.277	1				10211	1962	5849	5887	9862	9862					-0.06011752697554584
ETDEQRLRDEY	11	Unmodified	_ETDEQRLRDEY_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	727.331327	1452.6481	0.72418	0.00052672	0.24554	0.00017859	0.96972	0.00070531	727.3316772494594	28.773	0.20809	28.551	28.421	28.629	-0.22195	0.10764	0.00082556	NaN	205.73	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4371300			10212	1962	5849	5887							-0.06011752697554584
ETDHINQIGY	10	Unmodified	_ETDHINQIGY_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	595.7806396484375	2	595.277835	1188.54112	0.79334	0.00047226	-0.13413	-7.9843E-05	0.65921	0.00039241	595.277638237599	33.063	0.46058	33.063	32.887	33.348	0					21	8	5	0	0	0	0.027291	1	12209	12209		107.19	61.166	1	99113000			10213	2337	5850	5888	9863	9863					-0.045612581212935766
ETDHINQIGY	10	Unmodified	_ETDHINQIGY_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	595.2779541015625	2	595.277835	1188.54112	0.95404	0.00056792	-0.051312	-3.0545E-05	0.90272	0.00053737	595.2777274187536	33.238	0.3618	33.045	32.863	33.225	-0.19297					21	6	4	0	0	0	0.020806	1	12313	12313		118.89	72.874	1	343480000			10214	2337	5850	5888	9864	9864					-0.045612581212935766
ETDHINQIGY	10	Unmodified	_ETDHINQIGY_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1189.5491943359375	1	1189.54839	1188.54112	0.80055	0.00095229	-0.032804	-3.9022E-05	0.76775	0.00091327	1189.5482464506288	33.238	0.20818	33.045	32.914	33.123	-0.19297					5	3	2	0	0	0	0.023158	1	12353	12353		114.65	68.628	1	20141000			10215	2337	5850	5888	9865	9865					-0.045612581212935766
ETDHINQIGY	10	Unmodified	_ETDHINQIGY_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	595.27783203125	2	595.277835	1188.54112	0.66933	0.00039844	-0.026055	-1.551E-05	0.64328	0.00038293	595.2777171887283	33.457	0.29221	33.167	33.011	33.304	-0.29013					12	5	3	0	0	0	0.020806	1	12280	12280		118.89	72.874	1	17132000			10216	2337	5850	5888	9866	9866					-0.045612581212935766
ETDHKHDVY	9	Unmodified	_ETDHKHDVY_					0	0	0		ENST00000395894.6_1_17:15619323-15620601:+|nuORF;nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A	ENST00000395894.6_1_17:15619323-15620601:+|nuORF	ENST00000395894.6_1_17:15619323-15620601:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	572.2570190429688	2	572.256902	1142.49925	0.38104	0.00021805	0.065506	3.7486E-05	0.44655	0.00025554	572.2568702645298	16.757	0.20811	16.757	16.629	16.837	0					8	3	3	0	0	0	0.45867	1	5684	5684		19.257	7.6167	1	7219400			10217	5948	5851	5889	9867	9867					-0.06629813809809093
ETDHKHDVY	9	Unmodified	_ETDHKHDVY_					0	0	0		ENST00000395894.6_1_17:15619323-15620601:+|nuORF;nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A	ENST00000395894.6_1_17:15619323-15620601:+|nuORF	ENST00000395894.6_1_17:15619323-15620601:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	572.256902	1142.49925	0.39112	0.00022382	-0.013884	-7.945E-06	0.37724	0.00021588	572.2568119164653	17.301	0.26145	16.951	16.821	17.082	-0.34933	0.097332	-2.3104E-05	NaN	19.257	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17552000			10218	5948	5851	5889							-0.06629813809809093
ETDILDDEMPH	11	Unmodified	_ETDILDDEMPH_					0	0	0		TNS3|p.S1335Gfs*89|1|0.09|ENSG00000136205|chr7:47283791-47283792|-/CAGGGCCTTCATCCTGGACCAGGGTGATGCC|frameshift_variant;TNS3|p.L1417Cfs*22|1|0.13|ENSG00000136205|chr7:47278165-47278165|G/-|frameshift_variant;ENSG00000136205|ENST00000311160|TNS3	TNS3|p.S1335Gfs*89|1|0.09|ENSG00000136205|chr7:47283791-47283792|-/CAGGGCCTTCATCCTGGACCAGGGTGATGCC|frameshift_variant	TNS3|p.S1335Gfs*89|1|0.09|ENSG00000136205|chr7:47283791-47283792|-/CAGGGCCTTCATCCTGGACCAGGGTGATGCC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	438.854736328125	3	438.855459	1313.54455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.535	1	17.535	17.035	18.035	0								0	0	0	0.95023	1	5974	5974		2.8433	0	1				10219	3400	5852	5890	9868	9868					-0.09968376129586431
ETDKIINY	8	Unmodified	_ETDKIINY_					0	0	0		NCOA5|p.T426Pfs*19|2|0.24|ENSG00000124160|chr20:46062765-46062765|G/-|frameshift_variant;ENSG00000124160|ENST00000290231|NCOA5	NCOA5|p.T426Pfs*19|2|0.24|ENSG00000124160|chr20:46062765-46062765|G/-|frameshift_variant	NCOA5|p.T426Pfs*19|2|0.24|ENSG00000124160|chr20:46062765-46062765|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	498.2554931640625	2	498.25584	994.497126	0.43909	0.00021878	-0.54975	-0.00027392	-0.11066	-5.5138E-05	498.2555408070802	34.634	0.25923	34.634	34.545	34.804	0					5	4	2	0	0	0	0.26254	1	12881	12881		62.573	16.552	1	6380800			10220	2829	5853	5891	9869	9869					-0.0003424254761057455
ETDKNGFLQY	10	Unmodified	_ETDKNGFLQY_					0	0	0		nc|ENSG00000106733|Q9NWW6-2|NMRK1;ENSG00000106733|ENST00000361092|NMRK1;NMRK1|p.M66Nfs*25|1|0.28|ENSG00000106733|chr9:75070015-75070016|-/T|frameshift_variant	nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	MSMS	HCT116MG_D190212_S1	1	607.788818359375	2	607.788035	1213.56152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.515	1	41.515	41.015	42.015	0								0	0	0	0.096493	1	15634	15634		83.429	45.253	1				10221	2094	5854	5892	9870	9870					-0.03672087461472984
ETDLHGSLRV	10	Unmodified	_ETDLHGSLRV_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	564.2645263671875	2	563.796195	1125.57784	0.24561	0.00013847	0.08895	5.015E-05	0.33456	0.00018862	563.7963135442643	32.04	0.15652	32.04	31.961	32.118	0					4	2	2	0	0	0	0.24648	1	11814	11814		40.725	21.363	1	3979900			10222	4403	5855	5893	9871	9871					0.02007038495253255
ETDLLDIRS	9	Unmodified	_ETDLLDIRS_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MULTI-MSMS	HCT116MG_D190212_S2	2	531.2775268554688	2	531.277303	1060.54005	0.73909	0.00039266	0.13722	7.2903E-05	0.87631	0.00046556	531.2773184751719	43.609	0.25684	43.536	43.407	43.664	-0.073376					7	4	2	0	0	0	0.14171	1	16573	16573		49.933	19.296	1	15647000			10223	2759	5856	5894	9872	9872					0.012205275098040147
ETDLLDIRSEY	11	Unmodified	_ETDLLDIRSEY_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MULTI-MSMS	HCT116MG_D190212_S1	1	677.3305053710938	2	677.330264	1352.64598	0.5823	0.00039441	0.33865	0.00022938	0.92096	0.00062379	677.3304631819515	48.589	0.30871	48.589	48.408	48.717	0					15	5	4	0	0	0	1.6841E-15	1	18498	18498		226.96	171.46	1	138230000			10224	2759	5857	5895	9873	9873					-0.016241814353634254
ETDLLDIRSEY	11	Unmodified	_ETDLLDIRSEY_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MULTI-MSMS	HCT116MG_D190212_S2	2	677.8323364257812	2	677.330264	1352.64598	0.39058	0.00026455	0.27508	0.00018632	0.66566	0.00045087	677.3304049194178	48.758	0.35476	48.614	48.439	48.794	-0.1437					16	6	4	0	0	0	1.6841E-15	1	18627	18627		226.96	167.91	1	345990000			10225	2759	5857	5895	9874	9874					-0.016241814353634254
ETDLLDIRSEY	11	Unmodified	_ETDLLDIRSEY_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MULTI-MSMS	HCT116MG_D190212_S3	3	677.8325805664062	2	677.330264	1352.64598	1.1314	0.0007663	-0.18353	-0.00012431	0.94783	0.000642	677.3299720377477	48.947	0.4211	48.631	48.449	48.87	-0.31596					18	7	4	0	0	0	3.3463E-10	1	18414	18414		205.73	158	1	35568000			10226	2759	5857	5895	9875	9875					-0.016241814353634254
ETDLLDIRSEY	11	Unmodified	_ETDLLDIRSEY_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MULTI-MSMS	HCT116MG_D190212_S4	4	677.3307495117188	2	677.330264	1352.64598	0.50408	0.00034143	0.102	6.9087E-05	0.60608	0.00041052	677.330273253051	48.998	0.33383	48.633	48.429	48.763	-0.365					14	7	3	0	0	0	8.9367E-11	1	18150	18150		213.63	164.08	1	23681000			10227	2759	5857	5895	9876	9876					-0.016241814353634254
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S1	1	597.7810668945312	2	597.780544	1193.54654	0.71139	0.00042525	0.10733	6.4161E-05	0.81872	0.00048941	597.7804803489533	33.219	0.25871	33.219	33.089	33.348	0					14	4	4	0	0	0	0.003706	1	12289	12289		155.03	120.62	1	38815000			10228	1469	5858	5896	9877	9877					-0.04249534538826083
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MSMS	HCT116MG_D190212_S1	1	398.8561096191406	3	398.856122	1193.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.284	1	33.284	32.784	33.784	0								0	0	0	0.1107	1	12312	12312		49.527	25.737	1				10229	1469	5858	5896	9878	9878					-0.04249534538826083
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S2	2	597.781005859375	2	597.780544	1193.54654	1.0008	0.00059823	-0.27273	-0.00016303	0.72802	0.0004352	597.7803353675738	33.392	0.41173	33.2	33.019	33.43	-0.19297					20	7	4	0	0	0	0.0035147	1	12391	12391		168.66	133.73	1	201340000			10230	1469	5858	5896	9879	9879					-0.04249534538826083
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S2	2	398.8562316894531	3	398.856122	1193.54654	0.31851	0.00012704	0.0070002	2.7921E-06	0.32551	0.00012983	398.85601410203674	33.392	0.25578	33.2	33.071	33.327	-0.19297					9	4	3	0	0	0	0.097615	1	12399	12399		45.74	18.517	1	61085000			10231	1469	5858	5896	9880	9880					-0.04249534538826083
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S3	3	597.7809448242188	2	597.780544	1193.54654	0.59966	0.00035847	0.095969	5.7368E-05	0.69563	0.00041584	597.7806387896085	33.62	0.25903	33.33	33.2	33.459	-0.29013					7	4	2	0	0	0	0.0080847	1	12370	12370		118.07	88.987	1	12624000			10232	1469	5858	5896	9881	9881					-0.04249534538826083
ETDLRNHFY	9	Unmodified	_ETDLRNHFY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MATCH	HCT116MG_D190212_S3	3		3	398.856122	1193.54654	-0.005566	-2.22E-06	0.21502	8.5763E-05	0.20946	8.3543E-05	398.8561713583813	33.651	0.20742	33.361	33.2	33.408	-0.29013	0.080744	4.8234E-05	NaN	45.74	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3161900			10233	1469	5858	5896							-0.04249534538826083
ETDNMFNRY	9	Unmodified	_ETDNMFNRY_					0	0	0		ENST00000514430.5_1_4:103612112-103682069:-|nuORF;ENSG00000109323|ENST00000647097|MANBA	ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENST00000514430.5_1_4:103612112-103682069:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	595.25146484375	2	595.250763	1188.48697	0.48069	0.00028613	0.27353	0.00016282	0.75422	0.00044895	595.2509822266607	38.179	0.31048	38.086	37.908	38.219	-0.093006					10	5	3	0	0	0	0.069315	1	14344	14344		65.235	47.089	1	36178000			10234	2203	5859	5897	9882	9882					-0.09973173544494784
ETDNMFNRY	9	Unmodified	_ETDNMFNRY_					0	0	0		ENST00000514430.5_1_4:103612112-103682069:-|nuORF;ENSG00000109323|ENST00000647097|MANBA	ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENST00000514430.5_1_4:103612112-103682069:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	595.2509155273438	2	595.250763	1188.48697	0.55391	0.00032971	-0.3641	-0.00021673	0.18981	0.00011298	595.2507830854072	38.393	0.36298	38.092	37.937	38.3	-0.30137					14	6	3	0	0	0	0.069315	1	14233	14233		65.235	38.967	1	9598100			10235	2203	5859	5897	9883	9883					-0.09973173544494784
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	HCT116MG_D190212_S1	1	1066.5050048828125	1	1066.50513	1065.49785	0.49351	0.00052634	0.1069	0.00011401	0.60042	0.00064035	1066.504781707474	40.15	0.20725	40.15	40.021	40.228	0					6	3	2	0	0	0	0.035349	1	15091	15091		81.89	43.916	1	18957000			10236	4094	5860	5898	9884	9884					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7557373046875	2	533.756204	1065.49785	0.13249	7.0715E-05	0.122	6.5116E-05	0.25448	0.00013583	533.7561409913343	40.175	0.31091	40.175	39.969	40.28	0					11	5	3	0	0	0	0.14171	1	15092	15092		49.933	19.296	1	15569000			10237	4094	5860	5898	9885	9885					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	HCT116MG_D190212_S2	2	1066.5048828125	1	1066.50513	1065.49785	0.60948	0.00065001	-0.015432	-1.6458E-05	0.59404	0.00063355	1066.5047391736628	40.253	0.36376	40.18	39.998	40.361	-0.072838					14	6	3	0	0	0	0.023938	1	15165	15165		92.491	54.517	1	85833000			10238	4094	5860	5898	9886	9886					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7564697265625	2	533.756204	1065.49785	0.54065	0.00028858	-0.019692	-1.051E-05	0.52096	0.00027807	533.7561518109108	40.253	0.46682	40.18	39.998	40.465	-0.072838					18	8	3	0	0	0	0.14171	1	15178	15178		49.933	22.304	1	78319000			10239	4094	5860	5898	9887	9887					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	HCT116MG_D190212_S3	3	1066.50537109375	1	1066.50513	1065.49785	0.55294	0.00058972	0.016734	1.7847E-05	0.56968	0.00060756	1066.505076674967	40.444	0.62491	40.142	39.955	40.58	-0.30161					22	11	3	0	0	0	0.010834	1	15013	15013		111.29	73.313	1	36822000			10240	4094	5860	5898	9888	9888					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	HCT116MG_D190212_S3	3	533.7565307617188	2	533.756204	1065.49785	0.46897	0.00025032	0.039717	2.1199E-05	0.50869	0.00027152	533.756152771595	40.453	0.62498	40.151	39.903	40.528	-0.30161					26	11	3	0	0	0	0.097615	1	15014	15014		58.679	26.373	1	50390000			10241	4094	5860	5898	9889	9889					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	HCT116MG_D190212_S4	4	1066.5047607421875	1	1066.50513	1065.49785	0.60718	0.00064756	-0.037573	-4.0071E-05	0.56961	0.00060749	1066.5051072264296	40.535	0.34987	40.156	39.988	40.338	-0.37828					11	6	2	0	0	0	0.049545	1	14870	14870		74.929	36.955	1	6351200			10242	4094	5860	5898	9890	9890					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	HCT116MG_D190212_S4	4	533.7562866210938	2	533.756204	1065.49785	0.47193	0.0002519	0.088685	4.7336E-05	0.56062	0.00029923	533.7562467227337	40.547	0.34987	40.169	39.988	40.338	-0.37828					16	6	3	0	0	0	0.26536	1	14879	14879		34.402	9.0024	1	10185000			10243	4094	5860	5898	9891	9891					-0.03227447898552782
ETDNPRTTLVY	11	Unmodified	_ETDNPRTTLVY_					0	0	0		nc|ENSG00000075223|Q99985-2|SEMA3C;ENST00000458729.5_1_7:80422797-80546000:-|nuORF;ENSG00000075223|ENST00000265361|SEMA3C	nc|ENSG00000075223|Q99985-2|SEMA3C	nc|ENSG00000075223|Q99985-2|SEMA3C	MULTI-MSMS	HCT116MG_D190212_S2	2	654.8250732421875	2	654.825149	1307.63574	0.97093	0.00063579	-0.89108	-0.0005835	0.079845	5.2285E-05	654.8246333244587	35.898	0.20618	35.77	35.658	35.864	-0.12799					6	3	2	0	0	0	0.3318	2	13425	13425;13444		61.09	39.553	1	21627000			10244	1311	5861	5899	9892;9893	9892					-0.0057674436993693234
ETDNPRTTLVY	11	Unmodified	_ETDNPRTTLVY_					0	0	0		nc|ENSG00000075223|Q99985-2|SEMA3C;ENST00000458729.5_1_7:80422797-80546000:-|nuORF;ENSG00000075223|ENST00000265361|SEMA3C	nc|ENSG00000075223|Q99985-2|SEMA3C	nc|ENSG00000075223|Q99985-2|SEMA3C	MULTI-MATCH	HCT116MG_D190212_S1	1		2	654.825149	1307.63574	0.84646	0.00055429	-0.03818	-2.5001E-05	0.80828	0.00052928	654.8247249580301	35.863	0.20853	35.863	35.733	35.942	0	0.046552	0.0006481	NaN	61.09	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3653900			10245	1311	5861	5899							-0.0057674436993693234
ETDPGMVHL	9	Unmodified	_ETDPGMVHL_					0	0	0		CNOT2-GPCPD1|1|fusion;ENST00000548939.1_1_12:70732225-70736007:+|nuORF;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	CNOT2-GPCPD1|1|fusion	CNOT2-GPCPD1|1|fusion	MULTI-MSMS	HCT116MG_D190212_S2	2	499.73443603515625	2	499.734217	997.453881	0.29314	0.00014649	0.39262	0.00019621	0.68576	0.0003427	499.73436105880535	40.044	0.25958	39.971	39.79	40.05	-0.072838					6	4	2	0	0	0	0.17018	1	15103	15103		44.407	14.182	1	11129000			10246	499	5862	5900	9894	9894					-0.044947555965336505
ETDPSTDSQAL	11	Unmodified	_ETDPSTDSQAL_					0	0	0			REV__nc|ENSG00000138308|Q9BX93-2|PLA2G12B	REV__nc|ENSG00000138308|Q9BX93-2|PLA2G12B	MSMS	HCT116MG_D190212_S1	1	388.5085754394531	3	388.506935	1162.49898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.695	1	19.695	19.195	20.195	0								0	0	0	0.95113	1	6844	6844		2.6312	0	1		+		10247	12217	5863	5901	9895	9895					-0.07577278320309233
ETDPSTLGV	9	Unmodified	_ETDPSTLGV_					0	0	0		ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant	ENSG00000104218|ENST00000678616|CSPP1;CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant	ENSG00000104218|ENST00000678616|CSPP1	MULTI-MSMS	HCT116MG_D190212_S3	3	918.44140625	1	918.441468	917.434192	0.72959	0.00067008	-0.44619	-0.00040979	0.2834	0.00026029	918.4409242890401	36.924	0.25987	36.623	36.457	36.717	-0.30113					7	4	2	0	0	0	0.023611	1	13680	13680		92.822	21.689	1	3687800			10248	1922;610	5864	5902	9896	9896					-0.027828083356439492
ETDPSTLGV	9	Unmodified	_ETDPSTLGV_					0	0	0		ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant	ENSG00000104218|ENST00000678616|CSPP1;CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant	ENSG00000104218|ENST00000678616|CSPP1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	918.441468	917.434192	0.76558	0.00070314	-0.033004	-3.0312E-05	0.73258	0.00067283	918.4416483387722	36.757	0.20641	36.643	36.499	36.705	-0.11478	0.0099991	0.00029433	NaN	92.822	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8389000			10249	1922;610	5864	5902							-0.027828083356439492
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_		ETDRGM(1)SAEY		ETDRGM(48)SAEY	0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	HCT116MG_D190212_S1	1	587.7377319335938	2	587.737685	1173.46082	0.45768	0.000269	0.1171	6.8826E-05	0.57479	0.00033782	587.7377086315753	19.432	0.26015	19.432	19.235	19.495	0					8	4	2	0	0	0	0.33238	1	6744	6744		47.594	23.574	1	2824700			10250	1693	5865	5903	9897	9897		29			-0.11897487506621474
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_		ETDRGM(1)SAEY		ETDRGM(68)SAEY	0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	HCT116MG_D190212_S2	2	587.7379150390625	2	587.737685	1173.46082	0.52734	0.00030994	-0.37754	-0.00022189	0.14981	8.8046E-05	587.7375303593246	19.885	0.2592	19.509	19.351	19.61	-0.37503					8	4	2	0	0	0	0.13161	1	6920	6920		67.838	37.202	1	11107000			10251	1693	5865	5903	9898	9898		29			-0.11897487506621474
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_		ETDRGM(1)SAEY		ETDRGM(72)SAEY	0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MSMS	HCT116MG_D190212_S3	3	587.7372436523438	2	587.737685	1173.46082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.184	1	19.253	18.753	19.753	0.069159								0	0	0	0.16256	1	6563	6563		71.708	33.734	1				10252	1693	5865	5903	9899	9899		29			-0.11897487506621474
ETDRGMSAEY	10	Unmodified	_ETDRGMSAEY_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	HCT116MG_D190212_S1	1	579.7406616210938	2	579.740228	1157.4659	0.56293	0.00032636	0.07379	4.2779E-05	0.63672	0.00036913	579.7402252577249	25.834	0.36593	25.834	25.666	26.032	0					12	6	3	0	0	0	0.092421	1	9317	9317		75.571	41.468	1	17694000			10253	1693	5865	5904	9900	9900					-0.10653183643989905
ETDRGMSAEY	10	Unmodified	_ETDRGMSAEY_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	HCT116MG_D190212_S2	2	579.740478515625	2	579.740228	1157.4659	0.60627	0.00035148	0.0020752	1.2031E-06	0.60834	0.00035268	579.7401951053627	26.207	0.41413	25.846	25.662	26.076	-0.36164					19	7	4	0	0	0	0.011728	1	9471	9471		139.78	103.28	1	120270000			10254	1693	5865	5904	9901	9901					-0.10653183643989905
ETDRGMSAEY	10	Unmodified	_ETDRGMSAEY_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	HCT116MG_D190212_S3	3	579.7403564453125	2	579.740228	1157.4659	0.57171	0.00033145	-0.36396	-0.000211	0.20776	0.00012044	579.7401067916669	26.044	0.41716	25.916	25.755	26.172	-0.12795					20	7	4	0	0	0	0.017977	1	9322	9322		124.95	76.607	1	41695000			10255	1693	5865	5904	9902	9902					-0.10653183643989905
ETDRGMSAEY	10	Unmodified	_ETDRGMSAEY_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	HCT116MG_D190212_S4	4	579.7412109375	2	579.740228	1157.4659	0.20204	0.00011713	0.13442	7.7929E-05	0.33646	0.00019506	579.7404355846749	26.272	0.26029	25.971	25.817	26.078	-0.30087					11	4	3	0	0	0	0.053614	1	9359	9359		84.522	42.428	1	10315000			10256	1693	5865	5904	9903	9903					-0.10653183643989905
ETDRPLEI	8	Unmodified	_ETDRPLEI_					0	0	0			REV__tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	REV__tr|U7T271|U7T271_FUSNUBMCcircularlypermuteddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00492PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	486.7532043457031	2	486.753464	971.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.454	1	39.152	38.652	39.652	-0.30137								0	0	0	0.67883	1	14646	14646		32.305	3.8186	1		+		10257	17917	5866	5905	9904	9904					0.005488733096171927
ETDRRGALKA	10	Unmodified	_ETDRRGALKA_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S1	1	558.8099365234375	2	558.809636	1115.60472	0.38056	0.00021266	0.16491	9.2155E-05	0.54547	0.00030481	558.809680860025	16.343	0.31217	16.343	16.213	16.525	0					15	5	4	0	0	0	0.048151	1	5494	5494		91.085	47.312	1	47359000			10258	1495	5867	5906	9905	9905					0.051541471064638245
ETDRRGALKA	10	Unmodified	_ETDRRGALKA_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S1	1	372.8753662109375	3	372.875516	1115.60472	-0.15301	-5.7055E-05	-0.01763	-6.5737E-06	-0.17064	-6.3629E-05	372.87544934135803	16.343	0.26022	16.343	16.161	16.421	0					11	4	4	0	0	0	0.036414	1	5496	5496		97.284	56.559	1	30841000			10259	1495	5867	5906	9906	9906					0.051541471064638245
ETDRRGALKA	10	Unmodified	_ETDRRGALKA_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S2	2	558.8098754882812	2	558.809636	1115.60472	0.40047	0.00022379	0.17404	9.7258E-05	0.57452	0.00032104	558.809658347728	16.832	0.52045	16.49	16.36	16.881	-0.34183					21	9	3	0	0	0	0.016108	1	5692	5692		147.24	68.513	1	173550000			10260	1495	5867	5906	9907	9907					0.051541471064638245
ETDRRGALKA	10	Unmodified	_ETDRRGALKA_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S2	2	372.87554931640625	3	372.875516	1115.60472	-0.17719	-6.6071E-05	0.031139	1.1611E-05	-0.14605	-5.446E-05	372.875485796377	16.832	0.41632	16.49	16.36	16.776	-0.34183					18	7	4	0	0	0	0.044932	1	5702	5702		90.964	57.519	1	70016000			10261	1495	5867	5906	9908	9908					0.051541471064638245
ETDRRTLQM	9	Oxidation (M)	_ETDRRTLQM(Oxidation (M))_		ETDRRTLQM(1)		ETDRRTLQM(130)	0	0	1		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S1	1	583.2850952148438	2	583.285137	1164.55572	0.54904	0.00032024	-0.16712	-9.748E-05	0.38191	0.00022276	583.2849643045139	16.603	0.31224	16.603	16.473	16.785	0					12	5	3	0	0	0	0.0056012	1	5602	5602		132.38	93.765	1	19618000			10262	5865	5868	5907	9909	9909		126			-0.01997509244779394
ETDRRTLQM	9	Oxidation (M)	_ETDRRTLQM(Oxidation (M))_		ETDRRTLQM(1)		ETDRRTLQM(44)	0	0	1		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S1	1	389.1923828125	3	389.192517	1164.55572	-0.12246	-4.7662E-05	0.099138	3.8584E-05	-0.023326	-9.0784E-06	389.1925023215388	16.603	0.20821	16.603	16.473	16.681	0					10	3	4	0	0	0	0.17423	1	5609	5609		43.982	29.025	1	9007100			10263	5865	5868	5907	9910	9910		126			-0.01997509244779394
ETDRRTLQM	9	Oxidation (M)	_ETDRRTLQM(Oxidation (M))_		ETDRRTLQM(1)		ETDRRTLQM(120)	0	0	1		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S2	2	583.2854614257812	2	583.285137	1164.55572	0.52465	0.00030602	-0.069525	-4.0553E-05	0.45512	0.00026546	583.2851303230442	16.988	0.41628	16.639	16.509	16.925	-0.34933					21	7	4	0	0	0	0.0082095	1	5760	5760		117.76	79.146	1	62448000			10264	5865	5868	5907	9911	9911		126			-0.01997509244779394
ETDRRTLQM	9	Oxidation (M)	_ETDRRTLQM(Oxidation (M))_		ETDRRTLQM(1)		ETDRRTLQM(46)	0	0	1		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MSMS	HCT116MG_D190212_S2	2	389.1925354003906	3	389.192517	1164.55572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.051	1	16.701	16.201	17.201	-0.34933								0	0	0	0.22243	1	5778	5778		45.74	14.104	1				10265	5865	5868	5907	9912	9912		126			-0.01997509244779394
ETDRRTLQM	9	Unmodified	_ETDRRTLQM_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S1	1	575.2879638671875	2	575.287679	1148.56081	0.50951	0.00029311	-0.079392	-4.5673E-05	0.43012	0.00024744	575.287741827896	26.266	0.41713	26.266	26.032	26.449	0					23	7	5	0	0	0	0.0038512	1	9464	9464		152.89	99.482	1	92759000			10266	5865	5868	5908	9913	9913					-0.007532053821705631
ETDRRTLQM	9	Unmodified	_ETDRRTLQM_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S1	1	383.8608703613281	3	383.860878	1148.56081	-0.027568	-1.0582E-05	0.11616	4.4588E-05	0.088589	3.4006E-05	383.86084894949516	26.267	0.41703	26.267	26.084	26.501	0					16	7	3	0	0	0	0.05892	1	9475	9475		57.108	43.493	1	32340000			10267	5865	5868	5908	9914	9914					-0.007532053821705631
ETDRRTLQM	9	Unmodified	_ETDRRTLQM_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S2	2	575.2880859375	2	575.287679	1148.56081	0.29401	0.00016914	0.16203	9.3214E-05	0.45604	0.00026235	575.2878092925669	26.671	0.46932	26.31	26.076	26.545	-0.36164					26	8	5	0	0	0	0.0059958	1	9640	9640		128.93	90.318	1	441550000			10268	5865	5868	5908	9915	9915					-0.007532053821705631
ETDRRTLQM	9	Unmodified	_ETDRRTLQM_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S2	2	383.86077880859375	3	383.860878	1148.56081	-0.14322	-5.4975E-05	-0.0054714	-2.1003E-06	-0.14869	-5.7075E-05	383.860859763808	26.671	0.36605	26.309	26.128	26.494	-0.36164					19	6	4	0	0	0	0.15273	1	9660	9660		43.982	43.982	1	146770000			10269	5865	5868	5908	9916	9916					-0.007532053821705631
ETDRRTLQM	9	Unmodified	_ETDRRTLQM_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S3	3	575.2877807617188	2	575.287679	1148.56081	0.57858	0.00033285	0.49287	0.00028354	1.0714	0.00061639	575.2880708659809	26.326	0.26049	26.177	26.046	26.307	-0.14924					8	4	2	0	0	0	0.037825	1	9442	9442		80.676	46.274	1	22884000			10270	5865	5868	5908	9917	9917					-0.007532053821705631
ETDRRTLQM	9	Unmodified	_ETDRRTLQM_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S3	3	383.86077880859375	3	383.860878	1148.56081	0.048773	1.8722E-05	0.2416	9.2741E-05	0.29037	0.00011146	383.86071937253803	26.326	0.6248	26.177	25.994	26.619	-0.14924					15	11	2	0	0	0	0.13316	1	9449	9449		40.725	25.887	1	8983100			10271	5865	5868	5908	9918	9918					-0.007532053821705631
ETDTPAQL	8	Unmodified	_ETDTPAQL_					0	0	0		ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3	ENSG00000188612|ENST00000420826|SUMO2	ENSG00000188612|ENST00000420826|SUMO2	MULTI-MSMS	HCT116MG_D190212_S3	3	874.41552734375	1	874.415253	873.407977	0.70284	0.00061457	0.39688	0.00034704	1.0997	0.00096161	874.4154404940745	32.309	0.31252	32.03	31.838	32.15	-0.27841					7	5	2	0	0	0	0.060005	1	11862	11862		112.59	34.609	1	4933700			10272	5787	5869	5909	9919	9919					-0.03379077507133843
ETDTTITVML	10	Unmodified	_ETDTTITVML_					0	0	0		PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT;PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant	PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant	PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	562.2898559570312	2	562.281197	1122.54784	0.46115	0.0002593	-2.6905	-0.0015128	-2.2294	-0.0012535	562.2787716799712	48.912	0.35381	48.758	48.631	48.985	-0.15405					9	6	2	0	0	0	0.4604	1	18726	18726		37.974	0	1	49747000			10273	6042	5870	5910	9920	9920					-0.008530812849130598
ETEAVKRYNDY	11	Unmodified	_ETEAVKRYNDY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A216Pfs*6|2|0.26|ENSG00000087087|chr7:100884123-100884123|G/-|frameshift_variant;SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	HCT116MG_D190212_S2	2	694.3283081054688	2	694.328056	1386.64156	0.74488	0.00051719	0.12208	8.4761E-05	0.86695	0.00060195	694.3278393384707	23.813	0.20856	23.429	23.299	23.508	-0.38324					7	3	3	0	0	0	2.7322E-15	1	8531	8531		221.57	159.96	1	24644000			10274	1478	5871	5911	9921	9921					-0.036296458582683044
ETEEDKFLLLY	11	Unmodified	_ETEEDKFLLLY_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	700.3533935546875	2	700.353208	1398.69186	0.79783	0.00055876	-0.35004	-0.00024515	0.44779	0.00031361	700.3527251462244	55.785	0.1534	55.785	55.709	55.862	0					6	2	3	0	0	0	0.39464	1	21459	21459		55.503	41.597	1	50020000			10275	3408	5872	5912	9922	9922					0.008464637468705405
ETEEDKFLLLY	11	Unmodified	_ETEEDKFLLLY_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	700.3536376953125	2	700.353208	1398.69186	0.85593	0.00059945	-0.080417	-5.632E-05	0.77551	0.00054313	700.3531095012296	55.903	0.25699	55.717	55.587	55.844	-0.18565					13	4	5	0	0	0	0.0060991	1	21582	21582		139.38	105.93	1	258070000			10276	3408	5872	5912	9923	9923					0.008464637468705405
ETEEDKFLLLY	11	Unmodified	_ETEEDKFLLLY_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	700.3536376953125	2	700.353208	1398.69186	0.87328	0.0006116	0.041233	2.8877E-05	0.91451	0.00064048	700.3530964367674	56.041	0.15669	55.753	55.675	55.832	-0.28773					6	2	3	0	0	0	0.63759	1	21289	21289		31.268	17.362	1	7149100			10277	3408	5872	5912	9924	9924					0.008464637468705405
ETEEGIYWRY	10	Unmodified	_ETEEGIYWRY_					0	0	0		nc|ENSG00000131650|Q8NCW0-6|KREMEN2;nc|ENSG00000131650|Q8NCW0-4|KREMEN2;nc|ENSG00000131650|Q8NCW0-3|KREMEN2;nc|ENSG00000131650|Q8NCW0-5|KREMEN2;nc|ENSG00000131650|Q8NCW0-2|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	MULTI-MSMS	HCT116MG_D190212_S1	1	673.307373046875	2	673.306592	1344.59863	0.79952	0.00053832	0.11197	7.5393E-05	0.9115	0.00061372	673.306552472445	46.881	0.25895	46.881	46.751	47.01	0					12	4	4	0	0	0	0.015946	1	17808	17808		129.77	94.84	1	51451000			10278	3149	5873	5913	9925	9925					-0.059884159157036265
ETEEGIYWRY	10	Unmodified	_ETEEGIYWRY_					0	0	0		nc|ENSG00000131650|Q8NCW0-6|KREMEN2;nc|ENSG00000131650|Q8NCW0-4|KREMEN2;nc|ENSG00000131650|Q8NCW0-3|KREMEN2;nc|ENSG00000131650|Q8NCW0-5|KREMEN2;nc|ENSG00000131650|Q8NCW0-2|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	MULTI-MSMS	HCT116MG_D190212_S2	2	673.3077392578125	2	673.306592	1344.59863	0.67226	0.00045264	0.51728	0.00034828	1.1895	0.00080092	673.3067754246571	46.94	0.46301	46.818	46.615	47.078	-0.12175					19	8	3	0	0	0	0.00081686	1	17886	17886		179.17	141	1	139070000			10279	3149	5873	5913	9926	9926					-0.059884159157036265
ETEEGIYWRY	10	Unmodified	_ETEEGIYWRY_					0	0	0		nc|ENSG00000131650|Q8NCW0-6|KREMEN2;nc|ENSG00000131650|Q8NCW0-4|KREMEN2;nc|ENSG00000131650|Q8NCW0-3|KREMEN2;nc|ENSG00000131650|Q8NCW0-5|KREMEN2;nc|ENSG00000131650|Q8NCW0-2|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	nc|ENSG00000131650|Q8NCW0-6|KREMEN2	MULTI-MSMS	HCT116MG_D190212_S3	3	673.3063354492188	2	673.306592	1344.59863	0.8257	0.00055595	-0.43368	-0.000292	0.39202	0.00026395	673.3061760387368	47.163	0.26036	46.849	46.698	46.959	-0.31405					11	4	3	0	0	0	0.014564	1	17710	17710		133.05	93.102	1	9852100			10280	3149	5873	5913	9927	9927					-0.059884159157036265
ETEGKVKA	8	Unmodified	_ETEGKVKA_					0	0	0		nc|ENSG00000164694|Q4ZHG4-2|FNDC1	nc|ENSG00000164694|Q4ZHG4-2|FNDC1	nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MSMS	HCT116MG_D190212_S3	3	431.2386474609375	2	431.23745	860.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.544	1	31.274	30.774	31.774	-0.27028								0	0	0	0.8837	1	11528	11528		8.5933	3.3626	1				10281	9528	5874	5914	9928	9928					0.024535056264767263
ETEIRVVTV	9	Unmodified	_ETEIRVVTV_					0	0	0		ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2981567382812	2	523.298039	1044.58152	0.28579	0.00014956	0.14529	7.6031E-05	0.43109	0.00022559	523.2981495950327	38.709	0.21046	38.624	38.492	38.702	-0.084618					8	3	3	0	0	0	0.34272	1	14576	14576		26.268	0	1	19110000			10282	9102	5875	5915	9929	9929					0.061017082691250835
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	587.7730102539062	2	587.772385	1173.53022	0.47251	0.00027773	0.95049	0.00055867	1.423	0.0008364	587.7725349152921	25.175	0.47023	25.175	24.935	25.405	0					19	8	4	0	0	0	0.00046881	1	9046	9046		195.45	113.84	1	19730000			10283	163	5876	5916	9930	9930					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	392.18408203125	3	392.184016	1173.53022	-0.22142	-8.6836E-05	1.3068	0.00051252	1.0854	0.00042568	392.1840619635997	25.14	0.31437	25.14	24.935	25.249	0					7	5	2	0	0	0	0.053544	1	9050	9050		59.052	23.973	1	4369200			10284	163	5876	5916	9931	9931					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	587.7723999023438	2	587.772385	1173.53022	0.45409	0.0002669	-0.027774	-1.6325E-05	0.42632	0.00025058	587.772202739764	25.586	0.41649	25.217	25.03	25.446	-0.36914					22	7	4	0	0	0	0.0041644	1	9220	9220		148.27	102.25	1	149210000			10285	163	5876	5916	9932	9932					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	392.1838073730469	3	392.184016	1173.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.609	1	25.24	24.74	25.74	-0.36914								0	0	0	0.019309	1	9229	9229		75.571	40.491	1				10286	163	5876	5916	9933	9933					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	587.7730102539062	2	587.772385	1173.53022	0.61117	0.00035923	-0.10388	-6.1057E-05	0.5073	0.00029817	587.7722530048077	25.381	0.26004	25.274	25.1	25.36	-0.10618					12	4	3	0	0	0	0.0029864	2	9058	9034;9058		181.69	110.56	1	25390000			10287	163	5876	5916	9934;9935	9935					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	392.1838073730469	3	392.184016	1173.53022	0.048415	1.8988E-05	-0.049454	-1.9395E-05	-0.0010385	-4.0729E-07	392.1839598152501	25.353	0.26004	25.246	25.1	25.36	-0.10618					8	4	2	0	0	0	0.01405	1	9063	9063		93.938	52.591	1	10090000			10288	163	5876	5916	9936	9936					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	587.77294921875	2	587.772385	1173.53022	0.65263	0.0003836	-0.0063445	-3.7291E-06	0.64629	0.00037987	587.7722936217098	25.616	0.2601	25.327	25.153	25.413	-0.2886					9	4	3	0	0	0	0.02327	1	9093	9093		93.166	43.233	1	7167000			10289	163	5876	5916	9937	9937					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	392.18463134765625	3	392.184016	1173.53022	0.18249	7.1569E-05	0.41945	0.0001645	0.60194	0.00023607	392.1842689867594	25.583	0.15606	25.301	25.212	25.368	-0.28187					4	2	2	0	0	0	0.19461	1	9098	9098		32.037	21.722	1	1963700			10290	163	5876	5916	9938	9938					-0.049606604955670264
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S1	1	585.78955078125	2	585.789189	1169.56383	0.71034	0.00041611	0.029797	1.7455E-05	0.74014	0.00043357	585.7891139576691	26.006	0.26102	26.006	25.875	26.136	0					12	4	3	0	0	0	0.0035707	1	9380	9380		174.48	49.444	1	60731000			10291	2459;1233	5877	5917	9939	9939					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S1	1	391.19635009765625	3	390.861885	1169.56383	0.024311	9.5024E-06	-0.021506	-8.4057E-06	0.0028057	1.0967E-06	390.86179994931	26.006	0.31318	26.006	25.875	26.188	0					9	5	3	0	0	0	0.31596	1	9395	9395		21.59	7.1848	1	17939000			10292	2459;1233	5877	5917	9940	9940					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	585.7894287109375	2	585.789189	1169.56383	0.50914	0.00029825	-0.046104	-2.7007E-05	0.46303	0.00027124	585.7891686874517	26.411	0.41413	26.05	25.87	26.284	-0.36164					23	7	5	0	0	0	9.4614E-05	1	9555	9555		200.32	63.929	1	597210000			10293	2459;1233	5877	5917	9941	9941					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MSMS	HCT116MG_D190212_S2	2	390.8618469238281	3	390.861885	1169.56383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.438	1	26.076	25.576	26.576	-0.36164								0	0	0	0.0021192	1	9565	9565		105.35	36.585	1				10294	2459;1233	5877	5917	9942	9942					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S3	3	585.7894287109375	2	585.789189	1169.56383	0.60434	0.00035401	-0.027691	-1.6221E-05	0.57665	0.00033779	585.7891418122572	26.215	0.36494	26.068	25.893	26.258	-0.14639					21	6	5	0	0	0	0.0034538	1	9380	9380		162.31	48.128	1	101230000			10295	2459;1233	5877	5917	9943	9943					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S3	3	390.8619079589844	3	390.861885	1169.56383	0.068436	2.6749E-05	0.13012	5.0859E-05	0.19856	7.7608E-05	390.8618743989595	26.17	0.52111	26.042	25.911	26.432	-0.12795					11	9	2	0	0	0	0.043159	1	9399	9399		64.692	33.056	1	32844000			10296	2459;1233	5877	5917	9944	9944					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S4	4	390.8619384765625	3	390.861885	1169.56383	-0.024855	-9.715E-06	0.37646	0.00014714	0.3516	0.00013743	390.86183343497754	26.456	0.31207	26.156	25.974	26.286	-0.30087					9	5	2	0	0	0	0.15273	1	9433	9433		51.415	25.395	1	5123600			10297	2459;1233	5877	5917	9945	9945					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MSMS	HCT116MG_D190212_S4	4	585.78955078125	2	585.789189	1169.56383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.461	1	26.16	25.66	26.66	-0.30087								0	0	0	1.3548E-12	1	9427	9427		174.48	49.444	1				10298	2459;1233	5877	5917	9946	9946					-0.014173750480040326
ETEKMIEKY	9	Oxidation (M)	_ETEKM(Oxidation (M))IEKY_		ETEKM(1)IEKY		ETEKM(120)IEKY	0	0	1		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	593.7869873046875	2	593.786647	1185.55874	0.57812	0.00034328	0.40693	0.00024163	0.98505	0.00058491	593.786565293913	21.267	0.4147	20.884	20.755	21.169	-0.38288					12	7	3	0	0	0	0.0068462	1	7488	7488		121.5	51.171	1	20470000			10299	2459;1233	5877	5918	9947	9947		20			-0.02661678910635601
ETEKMIEKY	9	Oxidation (M)	_ETEKM(Oxidation (M))IEKY_		ETEKM(1)IEKY		ETEKM(81)IEKY	0	0	1		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S4	4	593.7864990234375	2	593.786647	1185.55874	0.89883	0.00053371	-0.044212	-2.6252E-05	0.85462	0.00050746	593.7864675749057	20.891	0.20755	20.682	20.552	20.76	-0.20959					5	3	2	0	0	0	0.037825	1	7189	7189		80.676	42.5	1	3705300			10300	2459;1233	5877	5918	9948	9948		20			-0.02661678910635601
ETEKMIEKY	9	Oxidation (M)	_ETEKM(Oxidation (M))IEKY_					0	0	1		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	593.786647	1185.55874	0.7777	0.00046178	0.066397	3.9426E-05	0.84409	0.00050121	593.7869093204351	20.65	0.15585	20.65	20.54	20.696	0	0.028608	9.0094E-05	NaN	80.676	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3050200			10301	2459;1233	5877	5918				20			-0.02661678910635601
ETEKMIEKY	9	Oxidation (M)	_ETEKM(Oxidation (M))IEKY_					0	0	1		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	593.786647	1185.55874	0.90544	0.00053764	-0.30324	-0.00018006	0.60219	0.00035758	594.2877447151899	21.151	0.20778	20.941	20.811	21.019	-0.20959	0.022464	-0.00038728	NaN	121.5	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2825800			10302	2459;1233	5877	5918				20			-0.02661678910635601
ETEKRCQVY	9	Unmodified	_ETEKRCQVY_					0	0	0		ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	MULTI-MSMS	HCT116MG_D190212_S2	2	578.2770385742188	2	578.27678	1154.53901	0.30524	0.00017651	0.10428	6.0304E-05	0.40952	0.00023682	578.2769366438729	21.682	0.25947	21.297	21.167	21.427	-0.38503					8	4	2	0	0	0	0.060947	1	7673	7673		66.457	39.573	1	17511000			10303	1533	5878	5919	9949	9949					-0.0320801013072014
ETEQTKFWDY	10	Unmodified	_ETEQTKFWDY_					0	0	0		ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	MULTI-MSMS	HCT116MG_D190212_S2	2	673.7986450195312	2	673.7986	1345.58265	0.2647	0.00017835	-0.0064828	-4.3681E-06	0.25821	0.00017398	673.798478998907	46.162	0.25704	46.061	45.863	46.12	-0.1014					7	4	2	0	0	0	0.01344	1	17587	17587		135.72	109.45	1	39028000			10304	6110	5879	5920	9950	9950					-0.07632122152608645
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	HCT116MG_D190212_S1	1	469.54901123046875	3	469.549357	1405.62624	0.37992	0.00017839	-0.24838	-0.00011663	0.13154	6.1764E-05	469.54926176368633	31.31	0.36433	31.31	31.128	31.492	0					12	6	3	0	0	0	0.048151	1	11518	11518		88.576	68.589	1	19028000			10305	2756	5880	5921	9951	9951					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	HCT116MG_D190212_S1	1	703.8215942382812	2	703.820398	1405.62624	0.88786	0.00062489	0.76173	0.00053612	1.6496	0.001161	703.8207329497861	31.31	0.20816	31.31	31.18	31.388	0					6	3	2	0	0	0	0.0091491	1	11527	11527		187.14	153.7	1	15244000			10306	2756	5880	5921	9952	9952					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	HCT116MG_D190212_S2	2	703.821044921875	2	703.820398	1405.62624	1.1032	0.00077647	-0.045422	-3.1969E-05	1.0578	0.0007445	703.8202864344503	31.525	0.31114	31.276	31.095	31.406	-0.24883					17	5	4	0	0	0	0.0097989	1	11626	11626		171.46	142.97	1	132090000			10307	2756	5880	5921	9953	9953					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	HCT116MG_D190212_S2	2	469.5494079589844	3	469.549357	1405.62624	0.4733	0.00022224	-0.29337	-0.00013775	0.17993	8.4484E-05	469.54919324902386	31.525	0.31114	31.276	31.095	31.406	-0.24883					13	5	3	0	0	0	0.053324	1	11634	11634		84.738	39.135	1	108810000			10308	2756	5880	5921	9954	9954					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	HCT116MG_D190212_S3	3	469.54931640625	3	469.549357	1405.62624	0.16801	7.8888E-05	-0.032631	-1.5322E-05	0.13538	6.3567E-05	469.54915230796223	31.726	0.31244	31.456	31.326	31.638	-0.27028					13	5	4	0	0	0	0.041584	1	11602	11602		93.448	61.986	1	26270000			10309	2756	5880	5921	9955	9955					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	HCT116MG_D190212_S3	3	703.8211059570312	2	703.820398	1405.62624	0.69234	0.00048728	-0.20562	-0.00014472	0.48671	0.00034256	703.8203447280871	31.726	0.31244	31.456	31.326	31.638	-0.27028					14	5	4	0	0	0	0.0061333	1	11605	11605		200.32	152.59	1	24624000			10310	2756	5880	5921	9956	9956					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	HCT116MG_D190212_S4	4	703.8206787109375	2	703.820398	1405.62624	0.65637	0.00046196	0.07413	5.2174E-05	0.7305	0.00051414	703.8201359351516	31.839	0.31142	31.463	31.33	31.642	-0.37529					11	5	4	0	0	0	0.45773	1	11596	11596		42.835	28.43	1	7481700			10311	2756	5880	5921	9957	9957					-0.06034512655469371
ETEREYFNRY	10	Unmodified	_ETEREYFNRY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	HCT116MG_D190212_S4	4	469.5491943359375	3	469.549357	1405.62624	0.013571	6.3722E-06	-0.3615	-0.00016974	-0.34793	-0.00016337	469.54928073216337	31.835	0.2076	31.46	31.33	31.538	-0.37529					6	3	2	0	0	0	0.51975	1	11597	11597		33.821	26.784	1	6874300			10312	2756	5880	5921	9958	9958					-0.06034512655469371
ETERFHPLTKN	11	Unmodified	_ETERFHPLTKN_					0	0	0			REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	686.8565673828125	2	686.354408	1370.69426	0.88931	0.00061038	-1.1234	-0.00077102	-0.23405	-0.00016064	686.353773048695	32.867	0.29427	32.867	32.742	33.037	0					12	5	3	0	0	0	0.69464	2	12158	12158;12161		23.79	9.3844	1	22181000	+		10313	17964	5881	5922	9959;9960	9959					0.023743569951875543
ETERFHPLTKN	11	Unmodified	_ETERFHPLTKN_					0	0	0			REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	686.8565673828125	2	686.354408	1370.69426	0.88931	0.00061038	-1.1234	-0.00077102	-0.23405	-0.00016064	686.353773048695	32.867	0.29427	32.867	32.742	33.037	0					12	5	3	0	0	0	0.33772	1	12158	12158		23.79	9.3844	1	22181000	+		10314	17964	5881	5922	9961	9961					0.023743569951875543
ETERIVTTY	9	Unmodified	_ETERIVTTY_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENST00000587329.1_1_19:10909095-10913035:+|nuORF	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	556.2853393554688	2	556.285128	1110.5557	0.55174	0.00030692	0.20247	0.00011263	0.75421	0.00041955	556.2850496919068	31.565	0.31245	31.565	31.388	31.7	0					13	5	4	0	0	0	0.01206	1	11604	11604		117.76	70.012	1	41248000			10315	718	5882	5923	9962	9962					0.0048481402686775255
ETERIVTTY	9	Unmodified	_ETERIVTTY_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENST00000587329.1_1_19:10909095-10913035:+|nuORF	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	556.2855834960938	2	556.285128	1110.5557	0.54792	0.0003048	0.74514	0.00041451	1.2931	0.00071931	556.2852349492828	31.733	0.36223	31.484	31.354	31.716	-0.24883					15	6	3	0	0	0	0.026793	1	11720	11720		107.1	44.527	1	116220000			10316	718	5882	5923	9963	9963					0.0048481402686775255
ETERIVTTY	9	Unmodified	_ETERIVTTY_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENST00000587329.1_1_19:10909095-10913035:+|nuORF	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1111.5648193359375	1	1111.56298	1110.5557	0.78088	0.000868	1.0102	0.0011229	1.7911	0.0019909	1111.5634996202284	31.733	0.31061	31.484	31.354	31.665	-0.24883					7	5	2	0	0	0	0.0093047	1	11747	11747		136.39	96.435	1	20112000			10317	718	5882	5923	9964	9964					0.0048481402686775255
ETERLTDDY	9	Unmodified	_ETERLTDDY_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	HCT116MG_D190212_S1	1	571.2561645507812	2	571.254025	1140.4935	0.51204	0.00029251	0.73801	0.00042159	1.25	0.00071409	571.2549520618753	29.295	0.26098	29.295	29.112	29.373	0					10	4	3	0	0	0	0.082877	1	10706	10706		61.602	30.965	1	22172000			10318	819	5883	5924	9965	9965					-0.07112957112144613
ETERLTDDY	9	Unmodified	_ETERLTDDY_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MSMS	HCT116MG_D190212_S3	3	571.25390625	2	571.254025	1140.4935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.726	1	29.489	28.989	29.989	-0.23655								0	0	0	1.0556E-05	1	10810	10810		148.27	92.091	1				10319	819	5883	5924	9966	9966					-0.07112957112144613
ETERLTDDY	9	Unmodified	_ETERLTDDY_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	HCT116MG_D190212_S4	4	571.2532348632812	2	571.254025	1140.4935	0.5746	0.00032824	-1.013	-0.00057869	-0.43842	-0.00025045	571.2532980615415	29.824	0.20794	29.475	29.345	29.553	-0.34921					5	3	2	0	0	0	0.24534	1	10813	10813		36.506	11.515	1	3399700			10320	819	5883	5924	9967	9967					-0.07112957112144613
ETERRMDFY	9	Unmodified	_ETERRMDFY_					0	0	0		nc|ENSG00000180354|Q8N3F0-4|MTURN;MTURN|p.R94Qfs*11|1|0.34|ENSG00000180354|chr7:30146289-30146290|-/T|frameshift_variant;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	MULTI-MSMS	HCT116MG_D190212_S1	1	623.7799072265625	2	623.779687	1245.54482	0.73406	0.00045789	3.0486	0.0019017	3.7827	0.0023596	623.7794985143718	33.478	0.31152	33.478	33.296	33.607	0					9	5	2	0	0	0	0.014973	2	12404	12394;12404		121.53	69.266	1	18585000			10321	5595	5884	5925	9968;9969	9969					-0.06812911619067563
ETERRMDFY	9	Unmodified	_ETERRMDFY_					0	0	0		nc|ENSG00000180354|Q8N3F0-4|MTURN;MTURN|p.R94Qfs*11|1|0.34|ENSG00000180354|chr7:30146289-30146290|-/T|frameshift_variant;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	MULTI-MSMS	HCT116MG_D190212_S2	2	623.7799682617188	2	623.779687	1245.54482	0.69792	0.00043535	0.039477	2.4625E-05	0.7374	0.00045997	623.779630772618	33.701	0.36301	33.508	33.276	33.639	-0.19297					16	6	4	0	0	0	0.0064252	1	12516	12516		148.27	117	1	124080000			10322	5595	5884	5925	9970	9970					-0.06812911619067563
ETERRMDFY	9	Unmodified	_ETERRMDFY_					0	0	0		nc|ENSG00000180354|Q8N3F0-4|MTURN;MTURN|p.R94Qfs*11|1|0.34|ENSG00000180354|chr7:30146289-30146290|-/T|frameshift_variant;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	MULTI-MSMS	HCT116MG_D190212_S2	2	416.18890380859375	3	416.188884	1245.54482	0.16525	6.8774E-05	-0.14929	-6.2131E-05	0.015961	6.6427E-06	416.18878699065135	33.701	0.31083	33.508	33.276	33.587	-0.19297					10	5	3	0	0	0	0.33492	1	12521	12521		27.088	11.35	1	37589000			10323	5595	5884	5925	9971	9971					-0.06812911619067563
ETERRMDFY	9	Unmodified	_ETERRMDFY_					0	0	0		nc|ENSG00000180354|Q8N3F0-4|MTURN;MTURN|p.R94Qfs*11|1|0.34|ENSG00000180354|chr7:30146289-30146290|-/T|frameshift_variant;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	MULTI-MSMS	HCT116MG_D190212_S3	3	416.5232849121094	3	416.188884	1245.54482	0.090657	3.7731E-05	-0.15287	-6.3623E-05	-0.062213	-2.5892E-05	416.18877390788276	33.931	0.3125	33.637	33.507	33.819	-0.29419					11	5	3	0	0	0	0.27966	2	12479	12442;12479		32.898	20.67	1	15850000			10324	5595	5884	5925	9972;9973	9973					-0.06812911619067563
ETERRMDFY	9	Unmodified	_ETERRMDFY_					0	0	0		nc|ENSG00000180354|Q8N3F0-4|MTURN;MTURN|p.R94Qfs*11|1|0.34|ENSG00000180354|chr7:30146289-30146290|-/T|frameshift_variant;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	MULTI-MSMS	HCT116MG_D190212_S3	3	623.7799682617188	2	623.779687	1245.54482	0.4474	0.00027908	-0.14684	-9.1593E-05	0.30057	0.00018749	623.7797387916286	33.931	0.41624	33.637	33.455	33.871	-0.29419					19	7	4	0	0	0	0.021544	1	12460	12460		103.42	82.966	1	40297000			10325	5595	5884	5925	9974	9974					-0.06812911619067563
ETERRMDFY	9	Unmodified	_ETERRMDFY_					0	0	0		nc|ENSG00000180354|Q8N3F0-4|MTURN;MTURN|p.R94Qfs*11|1|0.34|ENSG00000180354|chr7:30146289-30146290|-/T|frameshift_variant;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	nc|ENSG00000180354|Q8N3F0-4|MTURN	MULTI-MSMS	HCT116MG_D190212_S4	4	624.2819213867188	2	623.779687	1245.54482	0.41461	0.00025862	-0.091795	-5.726E-05	0.32281	0.00020136	623.7796177124726	34.031	0.31163	33.647	33.466	33.777	-0.38426					15	5	4	0	0	0	0.0080275	1	12413	12413		140.63	100.68	1	11409000			10326	5595	5884	5925	9975	9975					-0.06812911619067563
ETERRNTGY	9	Unmodified	_ETERRNTGY_					0	0	0		INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant	INPP4B|p.K530Efs*15|1|0.23|ENSG00000109452|chr4:142145972-142145973|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	563.26806640625	2	563.267801	1124.52105	0.3492	0.00019669	0.20097	0.0001132	0.55017	0.00030989	563.2680750456416	16.05	0.2611	15.715	15.533	15.794	-0.33451					8	4	2	0	0	0	0.016412	1	5383	5383		100.09	73.207	1	19414000			10327	2207	5885	5926	9976	9976					-0.03623009061220728
ETERTRNLY	9	Unmodified	_ETERTRNLY_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1;ENST00000521379.1_1_20:20018163-20019094:-|nuORF	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S1	1	591.29931640625	2	591.299101	1180.58365	0.59612	0.00035248	-0.034467	-2.038E-05	0.56165	0.0003321	591.2989961316897	23.028	0.2081	23.028	22.898	23.106	0					9	3	3	0	0	0	0.0064252	1	8182	8182		148.27	104.5	1	46054000			10328	1778	5886	5927	9977	9977					0.0005813700697672175
ETERTRNLY	9	Unmodified	_ETERTRNLY_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1;ENST00000521379.1_1_20:20018163-20019094:-|nuORF	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S1	1	394.5350036621094	3	394.53516	1180.58365	-0.13191	-5.2042E-05	-0.090241	-3.5603E-05	-0.22215	-8.7646E-05	394.53510703938946	23.028	0.3122	23.028	22.845	23.158	0					11	5	3	0	0	0	0.11498	1	8186	8186		55.235	32.219	1	17702000			10329	1778	5886	5927	9978	9978					0.0005813700697672175
ETERTRNLY	9	Unmodified	_ETERTRNLY_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1;ENST00000521379.1_1_20:20018163-20019094:-|nuORF	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S2	2	591.2994995117188	2	591.299101	1180.58365	0.5867	0.00034692	-0.084883	-5.0191E-05	0.50182	0.00029673	591.2990607558621	23.606	0.36421	23.223	23.091	23.456	-0.38324					17	6	4	0	0	0	0.005219	1	8443	8443		160.69	118.73	1	204880000			10330	1778	5886	5927	9979	9979					0.0005813700697672175
ETERTRNLY	9	Unmodified	_ETERTRNLY_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1;ENST00000521379.1_1_20:20018163-20019094:-|nuORF	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S2	2	394.53497314453125	3	394.53516	1180.58365	0.033481	1.3209E-05	-0.36986	-0.00014592	-0.33638	-0.00013271	394.53496339183755	23.612	0.31184	23.228	23.091	23.403	-0.38324					15	5	4	0	0	0	0.040372	1	8447	8447		79.427	42.352	1	63967000			10331	1778	5886	5927	9980	9980					0.0005813700697672175
ETERTRNLY	9	Unmodified	_ETERTRNLY_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1;ENST00000521379.1_1_20:20018163-20019094:-|nuORF	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S3	3	591.2990112304688	2	591.299101	1180.58365	0.47966	0.00028362	0.035967	2.1267E-05	0.51563	0.00030489	591.2990237351044	22.895	0.30001	22.876	22.699	22.999	-0.018869					11	5	3	0	0	0	0.005219	1	8058	8058		160.69	116.92	1	14586000			10332	1778	5886	5927	9981	9981					0.0005813700697672175
ETERTRNLY	9	Unmodified	_ETERTRNLY_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1;ENST00000521379.1_1_20:20018163-20019094:-|nuORF	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S3	3	394.5350646972656	3	394.53516	1180.58365	-0.13103	-5.1695E-05	0.019131	7.5478E-06	-0.1119	-4.4148E-05	394.5351146725806	22.888	0.24812	22.87	22.751	22.999	-0.018869					7	4	2	0	0	0	0.2333	1	8070	8070		37.771	13.982	1	11871000			10333	1778	5886	5927	9982	9982					0.0005813700697672175
ETERTRNLY	9	Unmodified	_ETERTRNLY_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1;ENST00000521379.1_1_20:20018163-20019094:-|nuORF	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S4	4	591.2993774414062	2	591.299101	1180.58365	0.55568	0.00032857	-0.24414	-0.00014436	0.31154	0.00018421	591.2987901308903	23.285	0.21024	23.037	22.905	23.116	-0.24775					5	3	2	0	0	0	0.39921	1	8163	8163		18.146	7.3224	1	3880100			10334	1778	5886	5927	9983	9983					0.0005813700697672175
ETERTRNLY	9	Unmodified	_ETERTRNLY_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1;ENST00000521379.1_1_20:20018163-20019094:-|nuORF	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MATCH	HCT116MG_D190212_S4	4		3	394.53516	1180.58365	-0.098128	-3.8715E-05	0.0040526	1.5989E-06	-0.094075	-3.7116E-05	394.5350981226949	23.258	0.21024	23.01	22.905	23.116	-0.24775	-0.023738	0.00010114	NaN	79.427	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	959980			10335	1778	5886	5927							0.0005813700697672175
ETEYSFLDY	9	Unmodified	_ETEYSFLDY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	HCT116MG_D190212_S3	3	1166.4891357421875	1	1166.48881	1165.48154	0.52201	0.00060892	0.55243	0.00064441	1.0744	0.0012533	1166.488848159851	55.297	0.2091	55.005	54.874	55.083	-0.2918					7	3	3	0	0	0	0.49914	1	21002	21002		16.942	3.8998	1	4611100			10336	6429	5887	5928	9984	9984					-0.09458573855317809
ETEYSFLDY	9	Unmodified	_ETEYSFLDY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MSMS	HCT116MG_D190212_S3	3	583.7481689453125	2	583.748044	1165.48154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.338	1	55.046	54.546	55.546	-0.2918								0	0	0	0.07135	1	20989	20989		64.236	40.216	1				10337	6429	5887	5928	9985	9985					-0.09458573855317809
ETEYSFLDY	9	Unmodified	_ETEYSFLDY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	HCT116MG_D190212_S4	4	583.7479858398438	2	583.748044	1165.48154	0.43318	0.00025287	-0.13704	-7.9996E-05	0.29614	0.00017287	583.7479386596502	55.324	0.20853	55.006	54.875	55.084	-0.31774					7	3	3	0	0	0	0.41514	1	20729	20729		21.747	9.2151	1	5341200			10338	6429	5887	5928	9986	9986					-0.09458573855317809
ETEYSFLDY	9	Unmodified	_ETEYSFLDY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	583.748044	1165.48154	0.6543	0.00038194	-0.82949	-0.00048421	-0.1752	-0.00010227	584.2489037320786	54.944	0.15298	54.944	54.841	54.994	0	-0.031126	-0.0006421	NaN	21.747	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16089000			10339	6429	5887	5928							-0.09458573855317809
ETEYSFLDY	9	Unmodified	_ETEYSFLDY_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1166.48881	1165.48154	0.58231	0.00067926	0.43121	0.000503	1.0135	0.0011823	1167.4926994713655	55.302	0.15648	54.984	54.875	55.032	-0.31775	-0.010392	-5.5073E-05	NaN	16.942	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1293100			10340	6429	5887	5928							-0.09458573855317809
ETFASNVYDTR	11	Unmodified	_ETFASNVYDTR_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	HCT116MG_D190212_S4	4	651.80029296875	2	651.801674	1301.58879	0.59021	0.0003847	-0.35102	-0.0002288	0.23919	0.0001559	651.8013381555235	40.156	0.61234	39.776	39.517	40.129	-0.37936					44	20	3	0	0	0	0.71532	2	14631	14631;14671		16.149	8.5402	1	13879000	+		10341	11916	5888	5929	9987;9988	9987					-0.04993603921116119
ETFYSTERY	9	Unmodified	_ETFYSTERY_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	HCT116MG_D190212_S1	1	598.267822265625	2	598.266936	1194.51932	0.57349	0.0003431	0.15162	9.0707E-05	0.72511	0.00043381	598.2670211774636	34.259	0.26082	34.259	34.128	34.389	0					9	4	3	0	0	0	0.016744	1	12719	12719		99.755	59.798	1	13585000			10342	5316	5889	5930	9989	9989					-0.07016062869843154
ETFYSTERY	9	Unmodified	_ETFYSTERY_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	HCT116MG_D190212_S3	3	598.7688598632812	2	598.266936	1194.51932	0.41854	0.0002504	0.11887	7.1115E-05	0.53741	0.00032151	598.2669368235397	34.615	0.31145	34.318	34.181	34.492	-0.29707					10	5	3	0	0	0	0.05892	1	12755	12755		70.332	33.826	1	6533500			10343	5316	5889	5930	9990	9990					-0.07016062869843154
ETGEQIQSWY	10	Unmodified	_ETGEQIQSWY_					0	0	0		nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	MULTI-MSMS	HCT116MG_D190212_S1	1	620.7772827148438	2	620.777667	1239.54078	0.47857	0.00029708	-0.24578	-0.00015258	0.23279	0.00014451	620.777414232128	32.456	0.31256	32.456	32.222	32.534	0					9	5	2	0	0	0	0.37629	1	11979	11979		43.858	12.59	1	8740400			10344	6600	5890	5931	9991	9991					-0.06940677841134857
ETGEQIQSWY	10	Unmodified	_ETGEQIQSWY_					0	0	0		nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	MULTI-MSMS	HCT116MG_D190212_S1	1	621.2801513671875	2	620.777667	1239.54078	0.77298	0.00047985	-0.74843	-0.00046461	0.024552	1.5241E-05	620.7771100665137	33.198	0.3628	33.198	32.933	33.296	0					11	6	2	0	0	0	0.48679	1	12301	12301		36.127	12.106	1	5445600			10345	6600	5890	5931	9992	9992					-0.06940677841134857
ETGEQIQSWY	10	Unmodified	_ETGEQIQSWY_					0	0	0		nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	MULTI-MSMS	HCT116MG_D190212_S2	2	620.7780151367188	2	620.777667	1239.54078	0.40518	0.00025153	0.3142	0.00019505	0.71938	0.00044657	620.7777505057057	32.615	0.36478	32.404	32.169	32.534	-0.21135					11	6	2	0	0	0	0.48679	1	12089	12089		36.127	9.8589	1	24805000			10346	6600	5890	5931	9993	9993					-0.06940677841134857
ETHAKHMLT	9	Unmodified	_ETHAKHMLT_					0	0	0			REV__ENST00000485078.1_1_7:141794591-141795514:+|nuORF	REV__ENST00000485078.1_1_7:141794591-141795514:+|nuORF	MSMS	HCT116MG_D190212_S3	3	534.2718505859375	2	534.268758	1066.52296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.246	1	21.264	20.764	21.764	0.018446								0	0	0	0.76655	1	7394	7394		13.042	0.80181	1		+		10347	14404	5891	5932	9994	9994					-0.007636715769876901
ETHFGLFAL	9	Unmodified	_ETHFGLFAL_					0	0	0		ENST00000368073.7_1_1:160187225-160187318:-|nuORF	ENST00000368073.7_1_1:160187225-160187318:-|nuORF	ENST00000368073.7_1_1:160187225-160187318:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	518.2590942382812	2	517.768917	1033.52328	0.19184	9.9328E-05	-0.39069	-0.00020229	-0.19885	-0.00010296	517.7687685173901	31.361	0.26118	31.091	30.908	31.169	-0.27028					6	4	2	0	0	0	0.24195	1	11477	11477		12.532	1.7076	1	4417000			10348	7398	5892	5933	9995	9995					0.007860714145181191
ETHFGLFAL	9	Unmodified	_ETHFGLFAL_					0	0	0		ENST00000368073.7_1_1:160187225-160187318:-|nuORF	ENST00000368073.7_1_1:160187225-160187318:-|nuORF	ENST00000368073.7_1_1:160187225-160187318:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	518.2593383789062	2	517.768917	1033.52328	0.20138	0.00010427	-0.42589	-0.00022051	-0.22451	-0.00011624	518.270236845262	31.521	0.20801	31.151	31.023	31.231	-0.37026					5	3	2	0	0	0	0.24195	1	11454	11454		4.3292	0.73274	1	1013200			10349	7398	5892	5933	9996	9996					0.007860714145181191
ETHIKQWLV	9	Unmodified	_ETHIKQWLV_					0	0	0			REV__ENST00000222584.7_1_7:21521673-21521709:+|nuORF	REV__ENST00000222584.7_1_7:21521673-21521709:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	577.7671508789062	2	577.321848	1152.62914	0.39304	0.00022691	-0.60319	-0.00034823	-0.21015	-0.00012132	577.3217155082609	27.766	0.20484	27.424	27.295	27.5	-0.34201					5	3	2	0	0	0	0.59184	1	10066	10066		11.64	1.5664	1	21951000	+		10350	14526	5893	5934	9997	9997					0.058934072599640785
ETHVPLHAQP	10	Unmodified	_ETHVPLHAQP_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-MSMS	HCT116MG_D190212_S4	4	564.5853271484375	2	564.793455	1127.57236	0.32508	0.00018361	0.75111	0.00042422	1.0762	0.00060783	565.2957386262328	32.517	0.41525	32.138	31.897	32.312	-0.37924					9	7	2	0	0	0	0.56527	1	11779	11779		30.637	0	1	1660800	+		10351	12651	5894	5935	9998	9998					0.013673597034767226
ETIIFNKKFRL	11	Unmodified	_ETIIFNKKFRL_					0	0	0		tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	tr|U7SKB1|U7SKB1_FUSNUCRISPR-associatedhelicasecas3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02172PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	704.9187622070312	2	704.919187	1407.82382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.025	1	10.752	10.252	11.252	-0.27365								0	0	0	0.96141	1	3528	3528		0.35063	0	1				10352	18323	5895	5936	9999	9999					0.1362215834512881
ETITAQNQEEY	11	Unmodified	_ETITAQNQEEY_					0	0	0			REV__SCN5A|p.A425T|1|0.46|ENSG00000183873|chr3:38606016-38606016|C/T|missense_variant	REV__SCN5A|p.A425T|1|0.46|ENSG00000183873|chr3:38606016-38606016|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	663.3329467773438	2	663.296421	1324.57829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.327	1	41.259	40.759	41.759	-0.068199								0	0	0	0.93717	1	15612	15612		13.042	3.6593	1		+		10353	17496	5896	5937	10000	10000					-0.07101631366163019
ETKAEEKPQ	9	Unmodified	_ETKAEEKPQ_					0	0	0			REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	530.7493286132812	2	530.269478	1058.5244	0.31906	0.00016919	1.0038	0.0005323	1.3229	0.00070149	530.2697489169545	21.095	0.26016	21.13	20.975	21.235	0.034473					6	4	2	0	0	0	0.23771	1	7349	7349		6.2058	0	1	1575900	+		10354	13815	5897	5938	10001	10001					-0.0025175900723297673
ETKDERFEQ	9	Unmodified	_ETKDERFEQ_					0	0	0		ENST00000605039.5_1_12:51696457-51717886:-|nuORF;BIN2|p.T500Hfs*24|1|0.33|ENSG00000110934|chr12:51291608-51291609|-/G|frameshift_variant;nc|ENSG00000110934|Q9UBW5-2|BIN2;nc|ENSG00000110934|Q9UBW5-3|BIN2;ENSG00000110934|ENST00000615107|BIN2	ENST00000605039.5_1_12:51696457-51717886:-|nuORF	ENST00000605039.5_1_12:51696457-51717886:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	592.3113403320312	2	591.275292	1180.53603	0.60278	0.00035641	1.2667	0.00074896	1.8695	0.0011054	591.2759552703825	27.099	0.20785	27.099	26.97	27.178	0					8	3	3	0	0	0	0.55223	1	9771	9771		13.906	0	1	9703800			10355	265	5898	5939	10002	10002					-0.047015619838930434
ETKLIDPRK	9	Unmodified	_ETKLIDPRK_					0	0	0			REV__MAP3K12|p.S536Lfs*35|1|0.36|ENSG00000139625|chr12:53483098-53483099|-/G|frameshift_variant	REV__MAP3K12|p.S536Lfs*35|1|0.36|ENSG00000139625|chr12:53483098-53483099|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	550.7598266601562	2	550.327131	1098.63971	0.62346	0.00034311	-1.2598	-0.0006933	-0.63634	-0.0003502	550.3263721805072	31.459	0.31216	31.459	31.284	31.596	0					9	5	3	0	0	0	0.25347	1	11519	11519		10.074	3.4436	1	6163400	+		10356	12266	5899	5940	10003	10003					0.09433389914420331
ETKPEFER	8	Unmodified	_ETKPEFER_					0	0	0		ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	MSMS	HCT116MG_D190212_S4	4	518.2586669921875	2	518.258914	1034.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.747	1	41.37	40.87	41.87	-0.37637								0	0	0	0.8837	1	15318	15318		8.5933	0	1				10357	5591	5900	5941	10004	10004					-0.012597243161053484
ETKPVYPVMEK	11	Unmodified	_ETKPVYPVMEK_					0	0	0		nc|ENSG00000010379|Q9NSD5-3|SLC6A13;SLC6A13|p.V227*|1|0.26|ENSG00000010379|chr12:237175-237175|C/-|frameshift_variant;nc|ENSG00000010379|Q9NSD5-2|SLC6A13;ENSG00000010379|ENST00000343164|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	MULTI-MSMS	HCT116MG_D190212_S3	3	660.84814453125	2	660.847039	1319.67952	0.79682	0.00052658	0.7308	0.00048295	1.5276	0.0010095	660.8472705093958	42.795	0.25994	42.49	42.352	42.612	-0.30472					9	4	3	0	0	0	0.72419	2	15969	15958;15969		12.873	3.5103	1	8552200			10358	9367	5901	5942	10005;10006	10006					0.0324714880277952
ETKPVYPVMEK	11	Unmodified	_ETKPVYPVMEK_					0	0	0		nc|ENSG00000010379|Q9NSD5-3|SLC6A13;SLC6A13|p.V227*|1|0.26|ENSG00000010379|chr12:237175-237175|C/-|frameshift_variant;nc|ENSG00000010379|Q9NSD5-2|SLC6A13;ENSG00000010379|ENST00000343164|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	MULTI-MATCH	HCT116MG_D190212_S2	2		2	660.847039	1319.67952	0.74095	0.00048965	1.8603	0.0012294	2.6012	0.001719	660.8478362732415	42.629	0.31211	42.559	42.377	42.689	-0.069984	0.039323	0.0013371	NaN	12.873	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13225000			10359	9367	5901	5942							0.0324714880277952
ETKPVYPVMEK	11	Unmodified	_ETKPVYPVMEK_					0	0	0		nc|ENSG00000010379|Q9NSD5-3|SLC6A13;SLC6A13|p.V227*|1|0.26|ENSG00000010379|chr12:237175-237175|C/-|frameshift_variant;nc|ENSG00000010379|Q9NSD5-2|SLC6A13;ENSG00000010379|ENST00000343164|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	660.847039	1319.67952	0.79682	0.00052658	0.7308	0.00048295	1.5276	0.0010095	660.8472705093958	42.795	0.25994	42.49	42.352	42.612	-0.30472	-0.029256	-0.00015575	NaN	12.873	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8552200			10360	9367	5901	5942							0.0324714880277952
ETKRFQGDNLL	11	Unmodified	_ETKRFQGDNLL_					0	0	0			REV__ENST00000468572.2_2_1:53662615-53668106:+|nuORF	REV__ENST00000468572.2_2_1:53662615-53668106:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	660.8479614257812	2	660.848958	1319.68336	0.6235	0.00041204	-2.1942	-0.00145	-1.5707	-0.001038	660.8478389260147	42.884	0.24327	42.509	42.306	42.549	-0.37493					5	4	2	0	0	0	0.7259	1	15791	15791		12.241	0.74595	1	3718600	+		10361	12746	5902	5943	10007	10007					0.03630954620916782
ETLDAVYVNRN	11	Unmodified	_ETLDAVYVNRN_					0	0	0			REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	647.6332397460938	2	647.325316	1292.63608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.068	1	24.007	23.507	24.507	-0.061449								0	0	0	0.82946	1	8529	8529		29.082	6.3453	1		+		10362	10150	5903	5944	10008	10008					0.0014667534990167042
ETLHTQFLRY	10	Unmodified	_ETLHTQFLRY_					0	0	0			REV__BUB1|p.R146H|1|0.29|ENSG00000169679|chr2:110670554-110670554|C/T|missense_variant	REV__BUB1|p.R146H|1|0.29|ENSG00000169679|chr2:110670554-110670554|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	436.56121826171875	3	436.562938	1306.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.781	1	31.532	31.032	32.032	-0.24883								0	0	0	0.92238	1	11736	11736		10.899	5.1155	1		+		10363	10067	5904	5945	10009	10009					0.025918734547985878
ETLLRRLRLR	10	Unmodified	_ETLLRRLRLR_					0	0	0		ENST00000304842.5_1_7:65670295-65705388:+|nuORF	ENST00000304842.5_1_7:65670295-65705388:+|nuORF	ENST00000304842.5_1_7:65670295-65705388:+|nuORF	MSMS	HCT116MG_D190212_S2	2	663.0020141601562	2	663.428045	1324.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.259	1	39.181	38.681	39.681	-0.077835								0	0	0	0.92607	1	14770	14770		10.074	4.777	1				10364	7021	5905	5946	10010	10010					0.1921091839062683
ETLNLTLAE	9	Unmodified	_ETLNLTLAE_					0	0	0			REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	502.269775390625	2	502.268947	1002.52334	0.44288	0.00022244	-0.64247	-0.00032269	-0.19959	-0.00010025	502.26850391458896	34	0.36455	33.706	33.559	33.923	-0.2942					9	6	2	0	0	0	0.28073	1	12527	12527		32.786	0	1	3400300	+		10365	12336	5906	5947	10011	10011					0.022180266238478907
ETLNQVICSA	10	Unmodified	_ETLNQVICSA_					0	0	0			REV__nc|ENSG00000143127|O75578-3|ITGA10	REV__nc|ENSG00000143127|O75578-3|ITGA10	MULTI-MSMS	HCT116MG_D190212_S4	4	539.7661743164062	2	539.265881	1076.51721	0.13695	7.385E-05	-4.2199	-0.0022756	-4.0829	-0.0022018	539.26252612677	17.571	0.31141	17.4	17.277	17.588	-0.17047					8	5	2	0	0	0	0.87059	1	5895	5895		5.7319	0.83484	1	1371700	+		10366	12376	5907	5948	10012	10012					-0.017988148793165237
ETLSHPSHEG	10	Unmodified	_ETLSHPSHEG_					0	0	0			REV__sp|P16764|UL29_HCMVAUncharacterizedproteinUL29OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=3SV=1	REV__sp|P16764|UL29_HCMVAUncharacterizedproteinUL29OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	547.2493896484375	2	547.249077	1092.4836	0.45319	0.00024801	-0.22097	-0.00012092	0.23222	0.00012708	547.2487913167419	52.845	0.30868	52.656	52.449	52.758	-0.18922					10	5	3	0	0	0	0.34998	1	20312	20312		46.021	3.9264	1	17008000	+		10367	17545	5908	5949	10013	10013					-0.05894100326872831
ETLYANGSH	9	Unmodified	_ETLYANGSH_					0	0	0		PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant	PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant	PRSS23|p.R96H|1|0.08|ENSG00000150687|chr11:86807930-86807930|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	496.2265319824219	2	496.227613	990.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.862	1	18.862	18.362	19.362	0								0	0	0	0.74436	1	6508	6508		16.942	0	1				10368	9785	5909	5950	10014	10014					-0.054928703842847426
ETNLRVVSA	9	Unmodified	_ETNLRVVSA_					0	0	0		ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	ENSG00000005379|ENST00000343736|TSPOAP1	ENSG00000005379|ENST00000343736|TSPOAP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	495.2215881347656	2	494.774731	987.534909	0.28425	0.00014064	0.11652	5.765E-05	0.40077	0.00019829	494.77480200818934	22.008	0.15627	21.623	21.531	21.687	-0.38503					4	2	2	0	0	0	0.17558	1	7772	7772		27.629	0	1	12214000			10369	814	5910	5951	10015	10015					0.040642684378553895
ETNVFTISA	9	Unmodified	_ETNVFTISA_					0	0	0			REV__ENSG00000164626|ENST00000359534|KCNK5	REV__ENSG00000164626|ENST00000359534|KCNK5	MULTI-MSMS	HCT116MG_D190212_S2	2	491.2477722167969	2	491.248015	980.481476	0.19415	9.5375E-05	-0.012091	-5.9395E-06	0.18206	8.9435E-05	491.24793418368296	38.388	0.31343	38.295	38.115	38.428	-0.09301					8	5	2	0	0	0	0.047849	1	14431	14431		75.761	11.8	1	21190000	+		10370	13013	5911	5952	10016	10016					-0.009545290646542526
ETNYSGYQL	9	Unmodified	_ETNYSGYQL_					0	0	0			REV__nc|ENSG00000185985|Q9H156-2|SLITRK2	REV__nc|ENSG00000185985|Q9H156-2|SLITRK2	MSMS	HCT116MG_D190212_S4	4	537.7417602539062	2	537.740554	1073.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.295	1	35.909	35.409	36.409	-0.38558								0	0	0	0.50556	1	13276	13276		28.487	2.1456	1		+		10371	13869	5912	5953	10017	10017					-0.06724020932665553
ETQFRDFTIK	10	Unmodified	_ETQFRDFTIK_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.0864	1	5.8249	5.3249	6.3249	-0.26151								0	0	0	0.96804	1	1855	1855		0.69767	0	1		+		10372	13745	5913	5954	10018	10018					0.020521672179029338
ETQHQSVPQ	9	Unmodified	_ETQHQSVPQ_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT;VEZT|p.G508Afs*5|1|0.21|ENSG00000028203|chr12:95287851-95287851|A/-|frameshift_variant;ENST00000546398.5_1_12:95611596-95687545:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	527.2516479492188	2	527.25162	1052.48869	0.40777	0.000215	-0.37828	-0.00019945	0.029488	1.5548E-05	527.2513797105441	23.389	0.41684	23.35	23.135	23.552	-0.03968					10	7	2	0	0	0	0.56733	1	8289	8289		13.042	0.51092	1	10540000			10373	961	5914	5955	10019	10019					-0.03545796464254636
ETQIDVKSP	9	Unmodified	_ETQIDVKSP_					0	0	0			REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	508.76605224609375	2	508.766571	1015.51859	0.51901	0.00026406	-0.85002	-0.00043246	-0.33101	-0.00016841	508.7660897413207	20.877	0.47179	20.877	20.54	21.012	0					14	8	2	0	0	0	0.21251	1	7327	7327		39.957	1.7818	1	3405900	+		10374	12120	5915	5956	10020	10020					0.011451424810957178
ETQLWSWDL	9	Unmodified	_ETQLWSWDL_					0	0	0			REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MSMS	HCT116MG_D190212_S3	3	589.2783203125	2	589.279846	1176.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.453	1	33.163	32.663	33.663	-0.29013								0	0	0	0.76575	1	12278	12278		15.847	1.9411	1		+		10375	11211	5916	5957	10021	10021					-0.03607168627581814
ETQTFTLLV	9	Unmodified	_ETQTFTLLV_					0	0	0			REV__ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant	REV__ADAMTSL3|p.N1166Kfs*26|1|0.4|ENSG00000156218|chr15:83983119-83983120|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	526.2868041992188	2	526.28714	1050.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.816	1	31.546	31.046	32.046	-0.27028								0	0	0	0.76603	1	11638	11638		14.838	0.93222	1		+		10376	9861	5917	5958	10022	10022					0.03646903520575506
ETRDIVSKA	9	Unmodified	_ETRDIVSKA_					0	0	0		tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	tr|U7SZL5|U7SZL5_FUSNUUrocanatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00788PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	509.7799987792969	2	509.780013	1017.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.306	1	20.355	19.855	20.855	0.048107								0	0	0	0.60272	1	7015	7015		23.79	5.4167	1				10377	18534	5918	5959	10023	10023					0.037402510922902366
ETRKRLRQP	9	Unmodified	_ETRKRLRQP_					0	0	0			REV__TIMM44|p.R202Q|1|0.44|ENSG00000104980|chr19:7933942-7933942|C/T|missense_variant	REV__TIMM44|p.R202Q|1|0.44|ENSG00000104980|chr19:7933942-7933942|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	592.3533325195312	2	592.354545	1182.69454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.991	1	39.612	39.112	40.112	-0.37936								0	0	0	0.76967	1	14657	14657		2.0598	0.21551	1		+		10378	11230	5919	5960	10024	10024					0.11049821505685031
ETRLFRAGVP	10	Unmodified	_ETRLFRAGVP_					0	0	0		ENST00000402675.5_1_3:3168720-3169299:+|nuORF	ENST00000402675.5_1_3:3168720-3169299:+|nuORF	ENST00000402675.5_1_3:3168720-3169299:+|nuORF	MSMS	HCT116MG_D190212_S2	2	573.0626831054688	2	573.324922	1144.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.533	1	35.391	34.891	35.891	-0.14245								0	0	0	0.92272	1	13258	13258		10.824	0.75	1				10379	7700	5920	5961	10025	10025					0.06875925491522139
ETRTYNVY	8	Unmodified	_ETRTYNVY_					0	0	0			REV__FOLH1|p.A180T|1|0.21|ENSG00000086205|chr11:49186745-49186745|C/T|missense_variant	REV__FOLH1|p.A180T|1|0.21|ENSG00000086205|chr11:49186745-49186745|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	523.2510375976562	2	523.251089	1044.48762	0.46081	0.00024112	-0.57326	-0.00029996	-0.11246	-5.8842E-05	523.2507558696971	25.928	0.36518	25.8	25.65	26.016	-0.12795					14	6	3	0	0	0	0.53394	1	9295	9295		38.151	0.17718	1	12597000	+		10380	16831	5921	5962	10026	10026					-0.032840108331583906
ETSIEPSITSQ	11	Unmodified	_ETSIEPSITSQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S4	4	596.292724609375	2	596.290608	1190.56666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.357	1	37.974	37.474	38.474	-0.38283								0	0	0	0.92235	1	14055	14055		17.113	1.2657	1		+		10381	13681	5922	5963	10027	10027					-0.020998283895323766
ETSVKRSLY	9	Unmodified	_ETSVKRSLY_					0	0	0			REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X	REV__nc|ENSG00000123575|Q6PEV8-2|FAM199X	MULTI-SECPEP	HCT116MG_D190212_S1	1	541.2899780273438	2	541.795663	1081.57677	0.79446	0.00043043	0.45433	0.00024615	1.2488	0.00067659	542.2977209053441	28.708	0.26374	28.708	28.535	28.798	0					5	4	2	0	0	0	0.18552	1	10423	10423		30.637	10.222	1	7582300	+		10382	11769	5923	5964	10028	10028					0.03924824126374915
ETTAWTKFSH	10	Unmodified	_ETTAWTKFSH_					0	0	0		ENST00000491840.1_1_13:26141407-26501380:+|nuORF;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2;ENST00000281620.10_1_13:26279420-26594120:+|nuORF	ENST00000491840.1_1_13:26141407-26501380:+|nuORF	ENST00000491840.1_1_13:26141407-26501380:+|nuORF	MSMS	HCT116MG_D190212_S2	2	403.197509765625	3	403.196256	1206.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.681	1	37.578	37.078	38.078	-0.10318								0	0	0	0.90475	1	14132	14132		8.9762	1.9392	1				10383	3219	5924	5965	10029	10029					-0.028083638790121768
ETTQFYIGYDW	11	Unmodified	_ETTQFYIGYDW_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	HCT116MG_D190212_S1	1	474.8791809082031	3	474.878592	1421.61395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.41	1	11.41	10.91	11.91	0								0	0	0	0.96141	1	3589	3589		0.094841	0.011491	1		+		10384	14214	5925	5966	10030	10030					-0.07999549118540017
ETTQFYIGYDW	11	Unmodified	_ETTQFYIGYDW_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	HCT116MG_D190212_S1	1	474.86871337890625	3	474.878592	1421.61395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.669	1	11.669	11.169	12.169	0								0	0	0	0.96141	1	3693	3693		0.094841	0.011491	1		+		10385	14214	5925	5966	10031	10031					-0.07999549118540017
ETVLMVLDLHK	11	Unmodified	_ETVLMVLDLHK_					0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	MSMS	HCT116MG_D190212_S1	1	649.3643798828125	2	649.362856	1296.71116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.847	1	43.847	43.347	44.347	0								0	0	0	0.91283	1	16577	16577		28.495	11.382	1		+		10386	13769	5926	5967	10032	10032					0.07467141556776369
ETVMGQLRAE	10	Unmodified	_ETVMGQLRAE_					0	0	0			REV__nc|ENSG00000137807|Q02241-3|KIF23	REV__nc|ENSG00000137807|Q02241-3|KIF23	MULTI-MSMS	HCT116MG_D190212_S2	2	567.2845458984375	2	567.284605	1132.55466	0.31712	0.00017989	-0.35864	-0.00020345	-0.041521	-2.3554E-05	567.2843839902015	21.68	0.36356	21.295	21.115	21.479	-0.38503					17	6	5	0	0	0	0.20072	1	7646	7646		59.368	1.6464	1	59753000	+		10387	12190	5927	5968	10033	10033					-0.0063172361371925945
ETVMGQLRAE	10	Unmodified	_ETVMGQLRAE_					0	0	0			REV__nc|ENSG00000137807|Q02241-3|KIF23	REV__nc|ENSG00000137807|Q02241-3|KIF23	MULTI-SECPEP	HCT116MG_D190212_S3	3	567.2412719726562	2	567.284605	1132.55466	0.27975	0.0001587	-0.12841	-7.2843E-05	0.15134	8.5854E-05	567.2845693713232	20.914	0.31225	20.949	20.818	21.131	0.034473					15	5	4	0	0	0	0.17042	1	7255	7255		67.838	6.2363	1	34366000	+		10388	12190	5927	5968	10034	10034					-0.0063172361371925945
ETVNSVRHP	9	Unmodified	_ETVNSVRHP_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.2305908203125	2	519.76998	1037.52541	0.30749	0.00015982	0.17767	9.2347E-05	0.48516	0.00025217	519.7700425583648	22.116	0.57225	21.731	21.427	21.999	-0.38503					18	10	2	0	0	0	0.18552	1	7803	7803		24.021	3.606	1	5829300			10389	1152	5928	5969	10035	10035					0.008145001523189421
ETVQAKIP	8	Unmodified	_ETVQAKIP_					0	0	0		SETD2|p.K1191Q|1|0.13|ENSG00000181555|chr3:47121065-47121065|T/G|missense_variant	SETD2|p.K1191Q|1|0.13|ENSG00000181555|chr3:47121065-47121065|T/G|missense_variant	SETD2|p.K1191Q|1|0.13|ENSG00000181555|chr3:47121065-47121065|T/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	443.189208984375	2	443.255643	884.496732	0.12874	5.7065E-05	-0.15072	-6.6808E-05	-0.021981	-9.7433E-06	443.25562354811393	22.952	0.15493	22.715	22.603	22.758	-0.23758					4	2	2	0	0	0	0.31507	1	7975	7975		2.3027	0	1	794980			10390	18149	5929	5970	10036	10036					0.049863825231796
ETVQLLSTL	9	Unmodified	_ETVQLLSTL_					0	0	0			REV__ENSG00000129696|ENST00000431156|TTI2	REV__ENSG00000129696|ENST00000431156|TTI2	MSMS	HCT116MG_D190212_S4	4	502.2684020996094	2	502.28714	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.171	1	33.786	33.286	34.286	-0.38558								0	0	0	0.76739	1	12467	12467		10.074	0	1		+		10391	11899	5930	5971	10037	10037					0.05854903520571497
ETYGDMADCC	10	Unmodified	_ETYGDMADCC_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MSMS	HCT116MG_D190212_S4	4	554.1762084960938	2	554.175017	1106.33548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0973	1	8.8766	8.3766	9.3766	-0.22071								0	0	0	0.96911	1	2779	2779		0.45834	0.45834	1			+	10392	555	5931	5972	10038	10038					-0.21343238958866095
ETYGQSCD	8	Unmodified	_ETYGQSCD_					0	0	0			REV__ENSG00000102390|ENST00000373358|PBDC1	REV__ENSG00000102390|ENST00000373358|PBDC1	MULTI-SECPEP	HCT116MG_D190212_S3	3	451.2405090332031	2	451.663457	901.312362	0.21923	9.9016E-05	-2.216	-0.0010009	-1.9968	-0.00090186	451.66220260681365	25.086	0.26089	24.98	24.839	25.1	-0.10618					6	4	2	0	0	0	0.32676	1	8904	8904		2.0598	1.3694	1	2400000	+		10393	11152	5932	5973	10039	10039					-0.1422417368968354
EVACGTVL	8	Unmodified	_EVACGTVL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MSMS	HCT116MG_D190212_S1	1	396.2014465332031	2	396.202021	790.38949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.661	1	55.661	55.161	56.161	0								0	0	0	0.8837	1	21379	21379		2.5775	0	1				10394	5560	5933	5974	10040	10040					-0.014089106826986608
EVAGDLIRRL	10	Unmodified	_EVAGDLIRRL_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MSMS	HCT116MG_D190212_S4	4	571.6093139648438	2	571.33803	1140.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.878	1	38.497	37.997	38.997	-0.38163								0	0	0	0.92607	1	14265	14265		10.074	1.3285	1				10395	5569	5934	5975	10041	10041					0.09680194662996655
EVAIMAPFLP	10	Unmodified	_EVAIMAPFLP_					0	0	0		ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant	ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant	ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	544.2978515625	2	544.296453	1086.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.252	1	39.874	39.374	40.374	-0.37828								0	0	0	0.90023	1	14761	14761		15.847	1.0089	1				10396	783	5935	5976	10042	10042					0.03852741890773359
EVDAALRAQ	9	Unmodified	_EVDAALRAQ_					0	0	0		nc|ENSG00000006756|P51689-2|ARSD;nc|ENSG00000006756|P51689-3|ARSD;ENSG00000006756|ENST00000381154|ARSD	nc|ENSG00000006756|P51689-2|ARSD	nc|ENSG00000006756|P51689-2|ARSD	MULTI-MSMS	HCT116MG_D190212_S2	2	486.7593688964844	2	486.759081	971.503609	-0.013352	-6.4991E-06	0.5781	0.0002814	0.56475	0.0002749	486.7592975802326	30.635	0.20555	30.364	30.247	30.453	-0.27056					5	3	2	0	0	0	0.21251	1	11303	11303		39.957	5.8549	1	12752000			10397	838	5936	5977	10043	10043					0.01671695403740614
EVDIREHY	8	Unmodified	_EVDIREHY_					0	0	0			REV__ENSG00000164303|ENST00000296741|ENPP6	REV__ENSG00000164303|ENST00000296741|ENPP6	MSMS	HCT116MG_D190212_S1	1	354.17340087890625	3	354.173451	1059.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.85	1	27.85	27.35	28.35	0								0	0	0	0.8837	1	10123	10123		10.074	3.8681	1		+		10398	12997	5937	5978	10044	10044					-0.028846084588622034
EVDPIGHLY	9	Unmodified	_EVDPIGHLY_					0	0	0		MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	521.763916015625	2	521.763832	1041.51311	0.30713	0.00016025	0.01638	8.5467E-06	0.32351	0.00016879	521.7637470445961	44.646	0.36511	44.646	44.464	44.829	0					19	6	4	0	0	0	0.0044093	1	16897	16897		144.66	73.523	1	177500000			10399	6468	5938	5979	10045	10045					-0.00598536310712916
EVDPIGHLY	9	Unmodified	_EVDPIGHLY_					0	0	0		MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1042.520751953125	1	1042.52039	1041.51311	0.74924	0.0007811	-0.95115	-0.0009916	-0.20191	-0.0002105	1042.518811904014	44.647	0.31261	44.647	44.516	44.829	0					6	5	2	0	0	0	0.0035329	1	16918	16918		170.55	114.37	1	18372000			10400	6468	5938	5979	10046	10046					-0.00598536310712916
EVDPIGHLY	9	Unmodified	_EVDPIGHLY_					0	0	0		MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	521.763916015625	2	521.763832	1041.51311	0.59725	0.00031163	-0.1595	-8.3224E-05	0.43775	0.0002284	521.763680782846	44.697	0.6785	44.612	44.325	45.004	-0.084797					38	12	5	0	0	0	0.0059651	1	16960	16960		129.2	67.843	1	531240000			10401	6468	5938	5979	10047	10047					-0.00598536310712916
EVDPIGHLY	9	Unmodified	_EVDPIGHLY_					0	0	0		MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1042.52099609375	1	1042.52039	1041.51311	1.016	0.0010592	-0.14099	-0.00014699	0.87497	0.00091217	1042.520058828286	44.699	0.31413	44.614	44.428	44.743	-0.084797					13	5	3	0	0	0	0.0035329	1	16979	16979		170.55	105.32	1	55956000			10402	6468	5938	5979	10048	10048					-0.00598536310712916
EVDPIGHLY	9	Unmodified	_EVDPIGHLY_					0	0	0		MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant;ENSG00000221867|ENST00000370278|MAGEA3	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MAGEA3|p.P266Lfs*19|1|0.23|ENSG00000221867|chrX:152701628-152701628|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	521.7640380859375	2	521.763832	1041.51311	0.49892	0.00026032	0.19337	0.00010089	0.69229	0.00036121	521.7639048547303	44.94	0.31099	44.631	44.421	44.732	-0.30927					15	6	3	0	0	0	0.050632	1	16824	16824		74.396	40.294	1	11453000			10403	6468	5938	5979	10049	10049					-0.00598536310712916
EVDSGRQIEY	10	Unmodified	_EVDSGRQIEY_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MSMS	HCT116MG_D190212_S1	1	598.2843017578125	2	598.283117	1194.55168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.865	1	28.865	28.365	29.365	0								0	0	0	0.038858	1	10529	10529		114.19	52.829	1				10404	2383	5939	5980	10050	10050					-0.03781275466849365
EVDTFTRTTN	10	Unmodified	_EVDTFTRTTN_					0	0	0		ENST00000473120.1_1_1:36553538-36553784:+|nuORF;ENSG00000092850|ENST00000207457|TEKT2	ENST00000473120.1_1_1:36553538-36553784:+|nuORF	ENST00000473120.1_1_1:36553538-36553784:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	592.29833984375	2	592.283117	1182.55168	0.72663	0.00043037	1.1813	0.00069965	1.9079	0.00113	592.2837701474095	31.299	0.25854	30.929	30.765	31.023	-0.37026					6	4	2	0	0	0	0.30738	1	11349	11349		13.906	7.1829	1	1545000			10405	1589	5940	5981	10051	10051					-0.03229275466856052
EVEEIRRKFEE	11	Unmodified	_EVEEIRRKFEE_					0	0	0		FAM184A|p.D182Tfs*21|1|0.26|ENSG00000111879|chr6:119024430-119024430|T/-|frameshift_variant;FAM184A|p.L424Ffs*10|1|0.45|ENSG00000111879|chr6:119020038-119020039|-/A|frameshift_variant;nc|ENSG00000111879|Q8NB25-4|FAM184A;nc|ENSG00000111879|Q8NB25-2|FAM184A;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A	FAM184A|p.D182Tfs*21|1|0.26|ENSG00000111879|chr6:119024430-119024430|T/-|frameshift_variant	FAM184A|p.D182Tfs*21|1|0.26|ENSG00000111879|chr6:119024430-119024430|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	732.3779907226562	2	732.37808	1462.74161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.44	1	23.401	22.901	23.901	-0.03968								0	0	0	0.91433	1	8276	8276		18.146	5.1039	1				10406	2320	5941	5982	10052	10052					0.028745914755063495
EVEHSQEALH	10	Unmodified	_EVEHSQEALH_					0	0	0			REV__BTNL3|p.S401Afs*7|2|0.29|ENSG00000168903|chr5:181005665-181005665|C/-|frameshift_variant	REV__BTNL3|p.S401Afs*7|2|0.29|ENSG00000168903|chr5:181005665-181005665|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	589.7760620117188	2	589.775459	1177.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.534	1	27.212	26.712	27.712	-0.32157								0	0	0	0.92607	1	9861	9861		10.074	0	1		+		10407	10065	5942	5983	10053	10053					-0.04530142264047754
EVELRVLEP	9	Unmodified	_EVELRVLEP_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;HMCN2|p.P4784Qfs*22|1|0.32|ENSG00000148357|chr9:130430363-130430363|C/-|frameshift_variant;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	HCT116MG_D190212_S3	3	542.30810546875	2	542.305864	1082.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.548	1	44.241	43.741	44.741	-0.30759								0	0	0	0.76669	1	16657	16657		12.532	0	1				10408	4020	5943	5984	10054	10054					0.05917994786182135
EVFEKRPQLR	10	Unmodified	_EVFEKRPQLR_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MSMS	HCT116MG_D190212_S2	2	651.3695068359375	2	651.369861	1300.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.054	1	41.985	41.485	42.485	-0.068199								0	0	0	0.93202	1	15908	15908		8.7454	1.1365	1		+		10409	11427	5944	5985	10055	10055					0.0868355510008314
EVFKWLIP	8	Unmodified	_EVFKWLIP_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MSMS	HCT116MG_D190212_S3	3	516.301513671875	2	516.299853	1030.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.463	1	39.162	38.662	39.662	-0.30137								0	0	0	0.8837	1	14650	14650		10.183	0	1				10410	4964	5945	5986	10056	10056					0.07108422833653094
EVFPRKESE	9	Unmodified	_EVFPRKESE_					0	0	0			REV__SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant	REV__SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	561.2855834960938	2	560.785296	1119.55604	0.45077	0.00025279	-0.57057	-0.00031997	-0.11979	-6.7178E-05	560.7853576913066	45.224	0.20875	44.915	44.785	44.993	-0.30927					7	3	3	0	0	0	0.68648	1	16878	16878		6.2058	0	1	6415300	+		10411	17542	5946	5987	10057	10057					0.0010423374671972852
EVFYAVKVL	9	Unmodified	_EVFYAVKVL_					0	0	0		ENST00000474427.6_1_6:134494408-134494507:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1	ENST00000474427.6_1_6:134494408-134494507:-|nuORF	ENST00000474427.6_1_6:134494408-134494507:-|nuORF	MSMS	HCT116MG_D190212_S1	1	534.2775268554688	2	534.310418	1066.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.716	1	28.716	28.216	29.216	0								0	0	0	0.76669	1	10469	10469		12.532	0.89125	1				10412	2609	5947	5988	10058	10058					0.07564388142509415
EVGANVHVPQ	10	Unmodified	_EVGANVHVPQ_					0	0	0		PEG3|p.E1375G|1|0.19|ENSG00000198300|chr19:56814318-56814318|T/C|missense_variant	PEG3|p.E1375G|1|0.19|ENSG00000198300|chr19:56814318-56814318|T/C|missense_variant	PEG3|p.E1375G|1|0.19|ENSG00000198300|chr19:56814318-56814318|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	525.2415771484375	2	525.272355	1048.53016	0.40642	0.00021348	-0.0080604	-4.2339E-06	0.39836	0.00020925	525.272374214589	20.402	1.1949	20.201	19.729	20.923	-0.20133					28	22	2	0	0	0	0.40515	2	6978	6944;6978		41.84	7.7372	1	2454700			10413	9742	5948	5989	10059;10060	10060					0.00783384295095857
EVGAPLSPDH	10	Unmodified	_EVGAPLSPDH_					0	0	0		ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	MSMS	HCT116MG_D190212_S3	3	511.25103759765625	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.8	1	19.86	19.36	20.36	0.05983								0	0	0	0.87399	1	6811	6811		19.257	0	1				10414	3085	5949	5990	10061	10061					-0.021800108331490264
EVGEELINEY	10	Unmodified	_EVGEELINEY_					0	0	0		EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2;ENST00000517593.5_1_8:109455866-109468189:+|nuORF	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	398.85577392578125	3	398.855676	1193.5452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.717	1	33.332	32.832	33.832	-0.38426								0	0	0	0.94107	1	12284	12284		3.5871	0	1				10415	775	5950	5991	10062	10062					-0.04383213418213927
EVGFKGGY	8	Unmodified	_EVGFKGGY_					0	0	0			REV__ENST00000415461.2_1_11:70253665-70266006:+|nuORF	REV__ENST00000415461.2_1_11:70253665-70266006:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	428.24884033203125	2	428.713611	855.412668	-0.096736	-4.1472E-05	0.35469	0.00015206	0.25795	0.00011059	428.7136040331106	29.925	0.36146	29.624	29.444	29.805	-0.30095					13	6	3	0	0	0	0.3238	1	11025	11025		5.7604	0	1	111390000	+		10416	10925	5951	5992	10063	10063					-0.02082148573708764
EVGKQGDL	8	Unmodified	_EVGKQGDL_					0	0	0		ENSG00000139344|ENST00000266736|AMDHD1	ENSG00000139344|ENST00000266736|AMDHD1	ENSG00000139344|ENST00000266736|AMDHD1	MULTI-MSMS	HCT116MG_D190212_S4	4	423.7210693359375	2	423.2218	844.429047	0.12047	5.0986E-05	-0.18818	-7.9642E-05	-0.067708	-2.8656E-05	423.22371466103243	34.814	1.0778	34.428	33.827	34.905	-0.38606					35	20	3	0	0	0	0.79062	1	12635	12635		12.532	0.89125	1	4662600			10417	3623	5952	5993	10064	10064					0.0006093259237331949
EVGPPLPSPV	10	Unmodified	_EVGPPLPSPV_					0	0	0		ENST00000416938.5_1_7:99704896-99705589:+|nuORF	ENST00000416938.5_1_7:99704896-99705589:+|nuORF	ENST00000416938.5_1_7:99704896-99705589:+|nuORF	MSMS	HCT116MG_D190212_S4	4	496.2755126953125	2	496.276575	990.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.461	1	37.077	36.577	37.577	-0.3839								0	0	0	0.90892	1	13748	13748		13.906	2.2658	1				10418	7761	5953	5994	10065	10065					0.04294938211717181
EVGQKQCEEYK	11	Unmodified	_EVGQKQCEEYK_					0	0	0			REV__ENSG00000148291|ENST00000371964|SURF2	REV__ENSG00000148291|ENST00000371964|SURF2	MSMS	HCT116MG_D190212_S1	1	670.8137817382812	2	670.811184	1339.60782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.949	1	23.949	23.449	24.449	0								0	0	0	0.94851	1	8552	8552		7.1017	0.89594	1		+		10419	12535	5954	5995	10066	10066					-0.04840390621689039
EVGSLLWIL	9	Unmodified	_EVGSLLWIL_					0	0	0			REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	MSMS	HCT116MG_D190212_S1	1	515.3047485351562	2	515.302593	1028.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.315	1	50.315	49.815	50.815	0								0	0	0	0.060494	1	19195	19195		67.344	16.489	1		+		10420	15458	5955	5996	10067	10067					0.07748101625475101
EVHYSTRNPQ	10	Unmodified	_EVHYSTRNPQ_					0	0	0		nc|ENSG00000224287|P0C860|MSL3B	nc|ENSG00000224287|P0C860|MSL3B	nc|ENSG00000224287|P0C860|MSL3B	MSMS	HCT116MG_D190212_S1	1	615.796875	2	615.796726	1229.5789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.61	1	26.61	26.11	27.11	0								0	0	0	0.94339	1	9622	9622		6.2058	0	1				10421	9639	5956	5997	10068	10068					-0.026707471358122348
EVIAVNEAGVK	11	Unmodified	_EVIAVNEAGVK_					0	0	0			REV__ENSG00000137767|ENST00000260324|SQOR	REV__ENSG00000137767|ENST00000260324|SQOR	MULTI-SECPEP	HCT116MG_D190212_S3	3	565.2835083007812	2	564.816596	1127.61864	0.45058	0.0002545	0.82899	0.00046823	1.2796	0.00072272	564.8173272893837	37.2	0.20808	36.899	36.769	36.977	-0.30137					6	3	2	0	0	0	0.3506	1	13801	13801		11.495	2.1116	1	8020300	+		10422	12189	5957	5998	10069	10069					0.059933798148904316
EVIKWYVFLI	10	Unmodified	_EVIKWYVFLI_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MSMS	HCT116MG_D190212_S2	2	655.0151977539062	2	655.381374	1308.7482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.562	1	54.373	53.873	54.873	-0.1894								0	0	0	0.95351	1	21010	21010		3.9444	0	1				10423	5823	5958	5999	10070	10070					0.10617181164843714
EVKEMDRKLS	10	Unmodified	_EVKEMDRKLS_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	MSMS	HCT116MG_D190212_S2	2	617.94482421875	2	617.826637	1233.63872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.87	1	41.802	41.302	42.302	-0.068199								0	0	0	0.91638	1	15833	15833		12.241	0	1		+		10424	13118	5959	6000	10071	10071					0.031248074832092243
EVKFIIKKIEK	11	Unmodified	_EVKFIIKKIEK_					0	0	0			REV__tr|U7SM61|U7SM61_FUSNUYhcH/YjgK/YiaLfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02093PE=4SV=1	REV__tr|U7SM61|U7SM61_FUSNUYhcH/YjgK/YiaLfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02093PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	687.9385986328125	2	687.939588	1373.86462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.075	1	28.075	27.575	28.575	0								0	0	0	0.9598	1	10214	10214		1.1933	0.32897	1		+		10425	17720	5960	6001	10072	10072					0.1926449966472319
EVKGGDQI	8	Unmodified	_EVKGGDQI_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MULTI-MSMS	HCT116MG_D190212_S3	3	423.2236633300781	2	423.2218	844.429047	-0.072342	-3.0617E-05	0.65373	0.00027667	0.58139	0.00024606	423.2237451218363	34.701	0.67571	34.404	34.025	34.7	-0.29707					24	12	3	0	0	0	0.6854	1	12762	12762		24.674	10.092	1	5618900			10426	1323	5961	6002	10073	10073					0.0006093259237331949
EVKKFRVK	8	Unmodified	_EVKKFRVK_					0	0	0			REV__nc|ENSG00000137821|Q8IUZ0-2|LRRC49	REV__nc|ENSG00000137821|Q8IUZ0-2|LRRC49	MSMS	HCT116MG_D190212_S4	4	517.3277587890625	2	517.329476	1032.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.789	1	44.416	43.916	44.916	-0.37326								0	0	0	0.87079	1	16505	16505		16.942	4.4107	1		+		10427	17144	5962	6003	10074	10074					0.129383188478414
EVKKPSITR	9	Unmodified	_EVKKPSITR_					0	0	0			REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	REV__tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	353.21685791015625	3	353.216991	1056.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.712	1	33.328	32.828	33.828	-0.38426								0	0	0	0.76948	1	12282	12282		2.7352	0.45242	1		+		10428	17956	5963	6004	10075	10075					0.10309407259978798
EVKKRKKAVLF	11	Unmodified	_EVKKRKKAVLF_					0	0	0		ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	MSMS	HCT116MG_D190212_S3	3	673.4381103515625	2	673.437547	1344.86054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.854	1	51.544	51.044	52.044	-0.30927								0	0	0	0.95954	1	19588	19588		1.3295	0.13619	1				10429	5260	5964	6005	10076	10076					0.20190454961698379
EVKLKKYRRVL	11	Unmodified	_EVKLKKYRRVL_					0	0	0			REV__nc|ENSG00000119715|O95718|ESRRB	REV__nc|ENSG00000119715|O95718|ESRRB	MSMS	HCT116MG_D190212_S3	3	716.4610595703125	2	716.461553	1430.90855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.971	1	42.666	42.166	43.166	-0.30472								0	0	0	0.95954	1	16024	16024		1.3295	0.13619	1		+		10430	11667	5965	6006	10077	10077					0.21033528881707753
EVKRVKREHKR	11	Unmodified	_EVKRVKREHKR_					0	0	0			REV__ENST00000374530.7_2_9:112931764-112931902:+|nuORF	REV__ENST00000374530.7_2_9:112931764-112931902:+|nuORF	MSMS	HCT116MG_D190212_S4	4	732.9468994140625	2	732.947133	1463.87971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.714	1	10.524	10.024	11.024	-0.18973								0	0	0	0.96157	1	3289	3289		0.26902	0	1		+		10431	15203	5966	6007	10078	10078					0.16632804305277205
EVKVKCVL	8	Unmodified	_EVKVKCVL_					0	0	0		ENST00000397766.3_1_15:34394281-34394365:+|nuORF	ENST00000397766.3_1_15:34394281-34394365:+|nuORF	ENST00000397766.3_1_15:34394281-34394365:+|nuORF	MSMS	HCT116MG_D190212_S3	3	459.27984619140625	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.241	1	47.925	47.425	48.425	-0.31596								0	0	0	0.8837	1	18138	18138		5.7604	0	1				10432	7672	5967	6008	10079	10079					0.07996490064874706
EVLANTQKHLQ	11	Unmodified	_EVLANTQKHLQ_					0	0	0		nc|ENSG00000164304|Q8TC20-2|CAGE1;nc|ENSG00000164304|Q8TC20-4|CAGE1;nc|ENSG00000164304|Q8TC20|CAGE1;nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	MSMS	HCT116MG_D190212_S2	2	640.85205078125	2	640.851501	1279.68845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.794	1	55.609	55.109	56.109	-0.18565								0	0	0	0.92983	1	21515	21515		16.149	0	1				10433	4688	5968	6009	10080	10080					0.05979258483534977
EVLCKQRMADG	11	Unmodified	_EVLCKQRMADG_					0	0	0		ADAMTSL1|p.F929Sfs*29|1|0.17|ENSG00000178031|chr9:18777009-18777009|C/-|frameshift_variant;ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ADAMTSL1|p.R1713Gfs*28|1|0.2|ENSG00000178031|chr9:18906864-18906864|C/-|frameshift_variant;ENSG00000178031|ENST00000380548|ADAMTSL1	ADAMTSL1|p.F929Sfs*29|1|0.17|ENSG00000178031|chr9:18777009-18777009|C/-|frameshift_variant	ADAMTSL1|p.F929Sfs*29|1|0.17|ENSG00000178031|chr9:18777009-18777009|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	625.304443359375	2	625.305015	1248.59548	0.3551	0.00022205	0.3058	0.00019122	0.6609	0.00041326	625.3052452997118	16.225	0.98823	16.31	15.769	16.757	0.085424					44	18	3	0	0	0	0.74191	1	5227	5227		2.9952	2.9952	1	4803300			10434	51	5969	6010	10081	10081					-0.018877055657185338
EVLFRESVP	9	Unmodified	_EVLFRESVP_					0	0	0		nc|ENSG00000132003|Q9H7M6|ZSWIM4;ENSG00000132003|ENST00000590508|ZSWIM4	nc|ENSG00000132003|Q9H7M6|ZSWIM4	nc|ENSG00000132003|Q9H7M6|ZSWIM4	MULTI-MSMS	HCT116MG_D190212_S2	2	538.2931518554688	2	538.292756	1074.57096	0.48466	0.00026089	0.4042	0.00021758	0.88886	0.00047847	538.2928443037811	45.967	0.30781	45.865	45.71	46.017	-0.1014					12	5	3	0	0	0	0.23138	1	17509	17509		37.974	0	1	28028000			10435	3165	5970	6011	10082	10082					0.036657256147236694
EVLFTTLKLQW	11	Unmodified	_EVLFTTLKLQW_					0	0	0		ENST00000539276.6_1_12:110765565-110765640:+|nuORF	ENST00000539276.6_1_12:110765565-110765640:+|nuORF	ENST00000539276.6_1_12:110765565-110765640:+|nuORF	MSMS	HCT116MG_D190212_S2	2	689.561767578125	2	689.39247	1376.77039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.462	1	42.392	41.892	42.892	-0.069984								0	0	0	0.9387	1	16073	16073		12.241	5.6103	1				10436	8682	5971	6012	10083	10083					0.09707360842594426
EVLIPLIVIPV	11	Unmodified	_EVLIPLIVIPV_					0	0	0		ENSG00000122679|ENST00000242249|RAMP3	ENSG00000122679|ENST00000242249|RAMP3	ENSG00000122679|ENST00000242249|RAMP3	MSMS	HCT116MG_D190212_S4	4	402.269775390625	3	402.268692	1203.78425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.534	1	38.152	37.652	38.652	-0.38163								0	0	0	0.96121	1	14126	14126		0.45452	0.35968	1				10437	2777	5972	6013	10084	10084					0.19050638341695958
EVLKKHLKP	9	Unmodified	_EVLKKHLKP_					0	0	0		ENST00000468496.5_1_17:40362419-40369297:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B	ENST00000468496.5_1_17:40362419-40369297:-|nuORF	ENST00000468496.5_1_17:40362419-40369297:-|nuORF	MSMS	HCT116MG_D190212_S3	3	546.3487548828125	2	546.350409	1090.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.907	1	32.622	32.122	33.122	-0.28511								0	0	0	0.7689	1	12078	12078		4.756	0.42677	1				10438	5301	5973	6014	10085	10085					0.14454874536363604
EVLLLLTRKV	10	Unmodified	_EVLLLLTRKV_					0	0	0		TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant;TRANK1|p.P972Qfs*12|1|0.34|ENSG00000168016|chr3:36856675-36856675|G/-|frameshift_variant;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant;nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant	TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	592.390869140625	2	592.392273	1182.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.425	1	48.058	47.558	48.558	-0.36728								0	0	0	0.95648	1	17935	17935		3.2813	0.54611	1				10439	18660	5974	6015	10086	10086					0.18591985913417375
EVLNEMSMQP	10	Unmodified	_EVLNEMSMQP_					0	0	0			REV__PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	REV__PIK3C3|p.F623Lfs*43|2|0.38|ENSG00000078142|chr18:42037716-42037716|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	589.2659912109375	2	589.265024	1176.5155	0.53442	0.00031492	-0.0019953	-1.1758E-06	0.53242	0.00031374	589.2651147815509	18.522	0.78135	18.598	18.205	18.986	0.076334					40	14	4	0	0	0	0.77749	1	6219	6219		13.906	3.8321	1	10988000	+		10440	10833	5975	6016	10087	10087					-0.06570191959576732
EVLPGAKL	8	Unmodified	_EVLPGAKL_					0	0	0		ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant;ATG2B|p.F1495Lfs*16|1|0.09|ENSG00000066739|chr14:96306735-96306735|A/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B;ATG2B|p.V745Lfs*6|1|0.47|ENSG00000066739|chr14:96325854-96325854|T/-|frameshift_variant	ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant	ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	413.75506591796875	2	413.755278	825.496004	-0.28222	-0.00011677	-0.42159	-0.00017444	-0.70381	-0.00029121	413.75503836899577	40.306	0.20718	40.306	40.176	40.383	0					6	3	2	0	0	0	0.53394	1	15153	15153		38.151	4.0487	1	13333000			10441	213	5976	6017	10088	10088					0.07627587874128494
EVLRLRPRQ	9	Unmodified	_EVLRLRPRQ_					0	0	0			REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF	REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	583.8588256835938	2	583.859464	1165.70437	0.49614	0.00028968	-1.1215	-0.0006548	-0.62536	-0.00036512	583.8589086273641	51.73	0.52377	51.73	51.549	52.073	0					23	9	3	0	0	0	0.71345	1	19773	19773		4.3292	0	1	57410000	+		10442	16309	5977	6018	10089	10089					0.1281500951106409
EVLRLRPRQ	9	Unmodified	_EVLRLRPRQ_					0	0	0			REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF	REV__ENST00000530378.5_1_11:16757956-16760124:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	583.859464	1165.70437	0.49614	0.00028968	-1.1215	-0.0006548	-0.62536	-0.00036512	583.8589086273641	51.73	0.52377	51.73	51.549	52.073	0	0	0	NaN	4.3292	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57410000	+		10443	16309	5977	6018							0.1281500951106409
EVLYEEVHTV	10	Unmodified	_EVLYEEVHTV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S1	1	609.3040771484375	2	609.306061	1216.59757	0.37186	0.00022658	-2.532	-0.0015428	-2.1602	-0.0013162	609.3043724386764	19.066	0.31234	19.066	18.975	19.287	0					6	5	2	0	0	0	0.86862	1	6612	6612		6.2058	0.47393	1	2226100	+		10444	12706;18029	5978	6019	10090	10090					-0.0020663028460603527
EVMKFKQKPRF	11	Unmodified	_EVMKFKQKPRF_					0	0	0		CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54	CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	719.4063720703125	2	719.405389	1436.79623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.427	1	50.427	49.927	50.927	0								0	0	0	0.95954	1	19241	19241		1.3295	0	1				10445	417	5979	6020	10091	10091					0.09529931813221992
EVMMEFQGP	9	Unmodified	_EVMMEFQGP_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MSMS	HCT116MG_D190212_S1	1	534.228759765625	2	534.230453	1066.44635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.999	1	23.999	23.499	24.499	0								0	0	0	0.76603	1	8572	8572		14.838	6.9281	1				10446	6104	5980	6021	10092	10092					-0.08421231188458478
EVMRLHGGMQR	11	Unmodified	_EVMRLHGGMQR_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MSMS	HCT116MG_D190212_S2	2	657.3319091796875	2	657.331898	1312.64924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.702	1	39.624	39.124	40.124	-0.077835								0	0	0	0.93295	1	14951	14951		15.248	2.206	1		+		10447	14223	5981	6022	10093	10093					0.0054251165663572465
EVNGLISMY	9	Unmodified	_EVNGLISMY_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	HCT116MG_D190212_S2	2	1025.49609375	1	1025.49721	1024.48993	0.42359	0.00043439	-0.1649	-0.00016911	0.25869	0.00026528	1025.496632597752	53.148	0.20859	52.959	52.809	53.018	-0.18922					6	3	2	0	0	0	0.042978	1	20435	20435		78.149	36.055	1	12187000			10448	2188	5982	6023	10094	10094					-0.021332984196760663
EVNGVIFSA	9	Unmodified	_EVNGVIFSA_					0	0	0		ENST00000562045.1_1_16:2041147-2041558:+|nuORF	ENST00000562045.1_1_16:2041147-2041558:+|nuORF	ENST00000562045.1_1_16:2041147-2041558:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	935.484130859375	1	935.483273	934.475997	0.69481	0.00064999	0.55822	0.00052221	1.253	0.0011722	935.4836325337504	46.042	0.36004	45.941	45.812	46.172	-0.1014					9	6	2	0	0	0	0.066823	1	17538	17538		66.457	0	1	42701000			10449	8822	5983	6024	10095	10095					0.006137921435083626
EVNGVIFSA	9	Unmodified	_EVNGVIFSA_					0	0	0		ENST00000562045.1_1_16:2041147-2041558:+|nuORF	ENST00000562045.1_1_16:2041147-2041558:+|nuORF	ENST00000562045.1_1_16:2041147-2041558:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	935.4827270507812	1	935.483273	934.475997	0.98087	0.00091759	-0.27895	-0.00026095	0.70192	0.00065664	935.4828168570405	46.316	0.24459	46.004	45.882	46.126	-0.31237					10	6	2	0	0	0	0.13316	1	17348	17348		51.63	0	1	12535000			10450	8822	5983	6024	10096	10096					0.006137921435083626
EVNHVPSGP	9	Unmodified	_EVNHVPSGP_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MSMS	HCT116MG_D190212_S4	4	468.2328186035156	2	468.232699	934.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.442	1	21.223	20.723	21.723	-0.21832								0	0	0	0.58443	1	7402	7402		24.674	1.5255	1				10451	1159	5984	6025	10097	10097					-0.01900262659046348
EVNLLLVAT	9	Unmodified	_EVNLLLVAT_					0	0	0		ENSG00000204969|ENST00000526136|PCDHA2;PCDHA2|p.K766Rfs*29|2|0.32|ENSG00000204969|chr5:140797253-140797253|C/-|frameshift_variant;nc|ENSG00000204969|Q9Y5H9-3|PCDHA2;nc|ENSG00000204969|Q9Y5H9-2|PCDHA2	ENSG00000204969|ENST00000526136|PCDHA2	ENSG00000204969|ENST00000526136|PCDHA2	MULTI-MSMS	HCT116MG_D190212_S3	3	971.5768432617188	1	971.577174	970.569897	0.62047	0.00060284	-0.22433	-0.00021795	0.39614	0.00038488	971.5768291342113	55.989	0.20888	55.701	55.571	55.779	-0.28773					5	3	2	0	0	0	0.19461	1	21272	21272		41.84	0	1	2479600			10452	6361	5985	6026	10098	10098					0.08343511245789159
EVNVRRLRW	9	Unmodified	_EVNVRRLRW_					0	0	0			REV__ENSG00000126001|ENST00000397527|CEP250	REV__ENSG00000126001|ENST00000397527|CEP250	MSMS	HCT116MG_D190212_S3	3	614.3576049804688	2	614.357088	1226.69962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.206	1	41.903	41.403	42.403	-0.30352								0	0	0	0.7689	1	15716	15716		4.756	0.22714	1		+		10453	11829	5986	6027	10099	10099					0.09534125368304558
EVPEKLIQDRF	11	Unmodified	_EVPEKLIQDRF_					0	0	0		nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MSMS	HCT116MG_D190212_S2	2	687.3742065429688	2	687.374809	1372.73507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.432	1	51.253	50.753	51.753	-0.17915								0	0	0	0.94416	1	19733	19733		9.3831	0	1				10454	4804	5987	6028	10100	10100					0.06360698314779256
EVPLTGQLKIP	11	Unmodified	_EVPLTGQLKIP_					0	0	0			REV__C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	REV__C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	597.8572387695312	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.486	1	53.151	52.651	53.651	-0.33473								0	0	0	0.95636	1	19971	19971		2.9952	0.26005	1		+		10455	10072	5988	6029	10101	10101					0.11287116262769814
EVPRKNITL	9	Unmodified	_EVPRKNITL_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MSMS	HCT116MG_D190212_S1	1	535.3224487304688	2	535.321848	1068.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.622	1	36.622	36.122	37.122	0								0	0	0	0.76886	1	13657	13657		7.9102	0	1				10456	5174	5989	6030	10102	10102					0.09757407259985484
EVPTPTEQEV	10	Unmodified	_EVPTPTEQEV_					0	0	0		nc|ENSG00000283787|A8MZF0|PRR33;ENSG00000283787|ENST00000640310|PRR33	nc|ENSG00000283787|A8MZF0|PRR33	nc|ENSG00000283787|A8MZF0|PRR33	MULTI-SECPEP	HCT116MG_D190212_S2	2	565.2694702148438	2	564.774593	1127.53463	0.4953	0.00027973	3.5631	0.0020123	4.0584	0.0022921	565.2798989016308	43.487	0.30924	43.413	43.303	43.612	-0.073376					6	5	2	0	0	0	0.2945	1	16472	16472		16.149	0	1	6417600			10457	6705	5990	6031	10103	10103					-0.02403196072668834
EVQEAQLKQP	10	Unmodified	_EVQEAQLKQP_					0	0	0			REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	MSMS	HCT116MG_D190212_S3	3	585.3097534179688	2	585.311677	1168.6088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.255	1	37.954	37.454	38.454	-0.30137								0	0	0	0.90892	1	14165	14165		13.906	0.86358	1		+		10458	15733	5991	6032	10104	10104					0.031241918095020083
EVQEKRESPPA	11	Unmodified	_EVQEKRESPPA_					0	0	0		ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	MSMS	HCT116MG_D190212_S3	3	635.3250122070312	2	635.325316	1268.63608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.317	1	26.167	25.667	26.667	-0.14924								0	0	0	0.91433	1	9436	9436		18.146	3.3081	1				10459	1341	5992	6033	10105	10105					0.012506753499110346
EVQKFIRDL	9	Unmodified	_EVQKFIRDL_					0	0	0		ENST00000471541.2_1_3:75790873-75834630:-|nuORF	ENST00000471541.2_1_3:75790873-75834630:-|nuORF	ENST00000471541.2_1_3:75790873-75834630:-|nuORF	MSMS	HCT116MG_D190212_S2	2	383.2206115722656	3	383.220513	1146.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.781	1	45.679	45.179	46.179	-0.1014								0	0	0	0.76818	1	17420	17420		4.5289	0	1				10460	8158	5993	6034	10106	10106					0.0722538991442434
EVQLHLPKFK	10	Unmodified	_EVQLHLPKFK_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MSMS	HCT116MG_D190212_S4	4	619.8693237304688	2	619.866423	1237.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.592	1	49.23	48.73	49.73	-0.36213								0	0	0	0.95507	1	18400	18400		3.5965	0.31518	1				10461	6554	5994	6035	10107	10107					0.10894242219501393
EVQTEKRVP	9	Unmodified	_EVQTEKRVP_					0	0	0			REV__tr|U7T5A5|U7T5A5_FUSNUPhosphatepropanoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00500PE=3SV=1	REV__tr|U7T5A5|U7T5A5_FUSNUPhosphatepropanoyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00500PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	543.3026733398438	2	543.301113	1084.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.116	1	39.037	38.537	39.537	-0.078728								0	0	0	0.76575	1	14712	14712		15.847	3.3156	1		+		10462	17983	5995	6036	10108	10108					0.04876226500641678
EVQWTERECE	10	Unmodified	_EVQWTERECE_					0	0	0		KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant;KIF1A|p.N1306Kfs*14|1|0.46|ENSG00000130294|chr2:240725306-240725307|-/T|frameshift_variant;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant	KIF1A|p.R782Afs*30|1|0.33|ENSG00000130294|chr2:240760738-240760738|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	654.7800903320312	2	654.779884	1307.54522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.742	1	30.475	29.975	30.975	-0.26704								0	0	0	0.94339	1	11315	11315		6.2058	0	1				10463	3069	5996	6037	10109	10109					-0.09625536689873115
EVRKRKELELQ	11	Unmodified	_EVRKRKELELQ_					0	0	0		ENST00000483189.1_1_13:111893629-111928079:+|nuORF;nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7	ENST00000483189.1_1_13:111893629-111928079:+|nuORF	ENST00000483189.1_1_13:111893629-111928079:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	714.4193115234375	2	714.420082	1426.82561	0.8887	0.0006349	-0.85607	-0.00061159	0.032625	2.3308E-05	714.4190778651417	53.46	1.4455	53.271	52.345	53.79	-0.1894					54	27	3	0	0	0	0.74191	1	20412	20412		2.7352	0	1	14120000			10464	1846	5997	6038	10110	10110					0.12927167363113767
EVRKTSIKIP	10	Unmodified	_EVRKTSIKIP_					0	0	0		ENSG00000157077|ENST00000287727|ZFYVE9;nc|ENSG00000157077|O95405-2|ZFYVE9;ENST00000469134.1_1_1:52761607-52800448:+|nuORF	ENSG00000157077|ENST00000287727|ZFYVE9	ENSG00000157077|ENST00000287727|ZFYVE9	MSMS	HCT116MG_D190212_S4	4	585.8634033203125	2	585.86388	1169.71321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.126	1	52.791	52.291	53.291	-0.33473								0	0	0	0.95351	1	19826	19826		3.9444	0	1				10465	4313	5998	6039	10111	10111					0.13513938356913968
EVRRLGWAGPP	11	Unmodified	_EVRRLGWAGPP_					0	0	0		ENST00000480858.2_1_15:69075240-69076772:-|nuORF	ENST00000480858.2_1_15:69075240-69076772:-|nuORF	ENST00000480858.2_1_15:69075240-69076772:-|nuORF	MSMS	HCT116MG_D190212_S4	4	619.34423828125	2	619.343646	1236.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.08	1	46.709	46.209	47.209	-0.37038								0	0	0	0.94924	1	17403	17403		6.7232	0	1				10466	8246	5999	6040	10112	10112					0.06387016757116726
EVRRLLARH	9	Unmodified	_EVRRLLARH_					0	0	0			REV__HERC5|p.L430*|1|0.4|ENSG00000138646|chr4:88470659-88470659|T/-|frameshift_variant	REV__HERC5|p.L430*|1|0.4|ENSG00000138646|chr4:88470659-88470659|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	383.903076171875	3	383.903629	1148.68906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.999	1	52.999	52.499	53.499	0								0	0	0	0.76948	1	20286	20286		2.7352	1.6637	1		+		10467	12233	6000	6041	10113	10113					0.12066142713888439
EVSERRGYKII	11	Unmodified	_EVSERRGYKII_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MSMS	HCT116MG_D190212_S1	1	675.7235107421875	2	675.380426	1348.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.335	1	45.335	44.835	45.835	0								0	0	0	0.9387	1	17174	17174		12.241	2.8575	1		+		10468	11951	6001	6042	10114	10114					0.08587520408946148
EVSGAAKK	8	Unmodified	_EVSGAAKK_					0	0	0		tr|U7T5B5|U7T5B5_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00510PE=4SV=1	tr|U7T5B5|U7T5B5_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00510PE=4SV=1	tr|U7T5B5|U7T5B5_FUSNUGluconate:H+symporter(GntP)familytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00510PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	395.2274475097656	2	395.226885	788.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.221	1	35.836	35.336	36.336	-0.38558								0	0	0	0.8837	1	13247	13247		4.756	1.8668	1				10469	18626	6002	6043	10115	10115					0.03653540317623083
EVSGKPQKK	9	Unmodified	_EVSGKPQKK_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;TSHZ1|p.A1028Pfs*41|1|0.22|ENSG00000179981|chr18:75288485-75288485|G/-|frameshift_variant;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MSMS	HCT116MG_D190212_S1	1	500.7950744628906	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.171	1	56.171	55.671	56.671	0								0	0	0	0.76718	1	21588	21588		10.824	0.75	1				10470	5577	6003	6044	10116	10116					0.07149145334562945
EVSQRQRRWSG	11	Unmodified	_EVSQRQRRWSG_					0	0	0			REV__ENSG00000129048|ENST00000249887|ACKR4	REV__ENSG00000129048|ENST00000249887|ACKR4	MULTI-MSMS	HCT116MG_D190212_S3	3	695.3616333007812	2	694.860723	1387.70689	0.95936	0.00066662	-0.61596	-0.00042801	0.34339	0.00023861	695.3608266726634	56.442	0.47121	56.158	55.993	56.464	-0.28367					13	8	2	0	0	0	0.73364	1	21438	21438		9.3831	0	1	4087100	+		10471	11883	6004	6045	10117	10117					0.02854813178078075
EVSRPAGKD	9	Unmodified	_EVSRPAGKD_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MSMS	HCT116MG_D190212_S3	3	479.7527160644531	2	479.751256	957.487959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.874	1	37.573	37.073	38.073	-0.30137								0	0	0	0.52331	1	14014	14014		27.629	2.2295	1				10472	1598	6005	6046	10118	10118					0.007514088867196733
EVTDQMNRLE	10	Unmodified	_EVTDQMNRLE_					0	0	0			REV__CON__P50446	REV__CON__P50446	MULTI-MSMS	HCT116MG_D190212_S4	4	617.7900390625	2	617.790252	1233.56595	0.65874	0.00040696	0.0031399	1.9398E-06	0.66188	0.0004089	617.7901508842878	35.389	0.23998	35.003	34.802	35.042	-0.38606					7	4	2	0	0	0	0.60826	1	12959	12959		27.629	0	1	7168800	+	+	10473	10261	6006	6047	10119	10119					-0.04148946310192514
EVTGYKAGV	9	Unmodified	_EVTGYKAGV_					0	0	0		CELSR2-KIAA1324|1|fusion;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;ENST00000369936.2_1_1:109730792-109745631:+|nuORF;ENST00000369938.5_1_1:109730226-109745631:+|nuORF;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1	CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-MSMS	HCT116MG_D190212_S1	1	462.2453918457031	2	462.245275	922.475997	0.19135	8.8449E-05	0.02203	1.0183E-05	0.21338	9.8633E-05	462.2452045789578	31.674	0.41704	31.674	31.492	31.909	0					14	7	3	0	0	0	0.30117	1	11706	11706		30.637	2.1497	1	26996000			10474	397	6007	6048	10120	10120					0.011657921435244134
EVTKQTVL	8	Unmodified	_EVTKQTVL_					0	0	0		nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L	nc|ENSG00000116580|Q3T8J9-2|GON4L	nc|ENSG00000116580|Q3T8J9-2|GON4L	MULTI-SECPEP	HCT116MG_D190212_S4	4	459.2796936035156	2	459.26875	916.522947	0.27404	0.00012586	-2.4966	-0.0011466	-2.2225	-0.0010207	459.26734752817305	46.881	0.71687	46.51	46.226	46.943	-0.37134					14	13	2	0	0	0	0.33021	1	17413	17413		0.69038	0	1	2461600			10475	2520	6008	6049	10121	10121					0.061346516946514384
EVTLCCCA	8	Unmodified	_EVTLCCCA_					0	0	0		ENST00000583147.5_1_18:9337217-9337304:+|nuORF	ENST00000583147.5_1_18:9337217-9337304:+|nuORF	ENST00000583147.5_1_18:9337217-9337304:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	841.3264770507812	1	841.325258	840.317981	0.69905	0.00058813	0.83084	0.00069901	1.5299	0.0012871	841.3257230069958	57.957	0.20608	57.957	57.878	58.085	0					5	3	2	0	0	0	0.8506	1	22341	22341		5.2307	2.6532	1	40789000			10476	8964	6009	6050	10122	10122					-0.10856489703235184
EVTLLPQKKP	10	Unmodified	_EVTLLPQKKP_					0	0	0			REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	576.8505249023438	2	576.852981	1151.69141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.902	1	24.902	24.402	25.402	0								0	0	0	0.94107	1	8935	8935		6.7232	0.99131	1		+		10477	12624	6010	6051	10123	10123					0.1216313360832828
EVTNQGSQEHE	11	Unmodified	_EVTNQGSQEHE_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MSMS	HCT116MG_D190212_S4	4	629.2694702148438	2	629.270738	1256.52692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.336	1	37.953	37.453	38.453	-0.38283								0	0	0	0.94755	1	14046	14046		7.609	3.6646	1		+		10478	13119	6011	6052	10124	10124					-0.09107955340232365
EVTTDSIGYC	10	Unmodified	_EVTTDSIGYC_					0	0	0			REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	MSMS	HCT116MG_D190212_S2	2	363.1593933105469	3	363.15859	1086.45394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.58	1	61.437	60.937	61.937	-0.14227								0	0	0	0.96291	1	23854	23854		0.77653	0.078866	1		+		10479	17154	6012	6053	10125	10125					-0.08582800387193856
EVTTESDEQPV	11	Unmodified	_EVTTESDEQPV_					0	0	0		nc|ENSG00000168310|P14316-2|IRF2;ENSG00000168310|ENST00000393593|IRF2	nc|ENSG00000168310|P14316-2|IRF2	nc|ENSG00000168310|P14316-2|IRF2	MSMS	HCT116MG_D190212_S2	2	617.278076171875	2	617.277697	1232.54084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.453	1	39.375	38.875	39.875	-0.077835								0	0	0	0.94416	1	14849	14849		9.3831	1.7742	1				10480	5000	6013	6054	10126	10126					-0.06612722631803081
EVTTLQQRL	9	Unmodified	_EVTTLQQRL_					0	0	0		ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;nc|ENSG00000132912|Q9UJW0-2|DCTN4	ENSG00000132912|ENST00000447998|DCTN4	ENSG00000132912|ENST00000447998|DCTN4	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.3077392578125	2	544.308938	1086.60332	0.26128	0.00014222	-1.0595	-0.00057671	-0.79824	-0.00043449	544.308167930405	37.975	0.25817	37.882	37.753	38.011	-0.09301					7	4	2	0	0	0	0.25723	1	14292	14292		7.9102	2.6133	1	11247000			10481	3218	6014	6055	10127	10127					0.06348513017701407
EVVIKKRKRP	10	Unmodified	_EVVIKKRKRP_					0	0	0			REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF	REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF	MSMS	HCT116MG_D190212_S3	3	418.2797546386719	3	418.278585	1251.81392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.725	1	57.45	56.95	57.95	-0.27434								0	0	0	0.96804	1	21943	21943		0.69767	0.53834	1		+		10482	16508	6015	6056	10128	10128					0.19809015130408625
EVVKSQRPLQR	11	Unmodified	_EVVKSQRPLQR_					0	0	0		OLFML2B|p.T394Nfs*93|1|0.33|ENSG00000162745|chr1:161998118-161998119|-/T|frameshift_variant;OLFML2B|p.L668Sfs*57|1|0.37|ENSG00000162745|chr1:161983927-161983927|C/-|frameshift_variant;ENSG00000162745|ENST00000294794|OLFML2B	OLFML2B|p.T394Nfs*93|1|0.33|ENSG00000162745|chr1:161998118-161998119|-/T|frameshift_variant	OLFML2B|p.T394Nfs*93|1|0.33|ENSG00000162745|chr1:161998118-161998119|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	670.3948364257812	2	670.393867	1338.77318	0.72093	0.00048331	-0.053556	-3.5904E-05	0.66737	0.0004474	670.3932940803301	52.05	0.78048	52.05	51.807	52.587	0					25	14	3	0	0	0	0.74191	1	19808	19808		2.086	0.60411	1	14514000			10483	4551	6016	6057	10129	10129					0.1173462902013398
EVVKYLQEV	9	Unmodified	_EVVKYLQEV_					0	0	0		ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	MSMS	HCT116MG_D190212_S1	1	553.8082275390625	2	553.808239	1105.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.522	1	42.522	42.022	43.022	0								0	0	0	0.029994	1	16040	16040		82.529	6.7685	1				10484	4331	6017	6058	10130	10130					0.05334878928965736
EVVKYLQEV	9	Unmodified	_EVVKYLQEV_					0	0	0		ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	MULTI-MSMS	HCT116MG_D190212_S2	2	553.8077392578125	2	553.808239	1105.60193	0.50859	0.00028166	-0.50583	-0.00028013	0.0027594	1.5282E-06	553.8079823850421	42.528	0.36475	42.458	42.273	42.637	-0.069984					16	6	3	0	0	0	0.090581	1	16103	16103		60.074	1.3951	1	59823000			10485	4331	6017	6058	10131	10131					0.05334878928965736
EVVMVPFPV	9	Unmodified	_EVVMVPFPV_					0	0	0		nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET	nc|ENSG00000165731|P07949-2|RET	nc|ENSG00000165731|P07949-2|RET	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7799987792969	2	508.777896	1015.54124	0.3093	0.00015736	2.3942	0.0012181	2.7035	0.0013755	508.778642041449	45.564	0.36	45.471	45.205	45.565	-0.092476					12	6	3	0	0	0	0.39063	1	17354	17354		23.148	1.4018	1	16946000			10486	4795	6018	6059	10132	10132					0.03409070345026066
EVVRVYNKL	9	Unmodified	_EVVRVYNKL_					0	0	0			REV__ENSG00000109586|ENST00000265000|GALNT7	REV__ENSG00000109586|ENST00000265000|GALNT7	MSMS	HCT116MG_D190212_S2	2	560.3276977539062	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.021	1	40.952	40.452	41.452	-0.069626								0	0	0	0.768	1	15487	15487		7.9102	1.187	1		+		10487	11376	6019	6060	10133	10133					0.09021693777026485
EVVTHMLDFKA	11	Unmodified	_EVVTHMLDFKA_					0	0	0			REV__COL14A1|p.E319K|1|0.26|ENSG00000187955|chr8:120203786-120203786|G/A|missense_variant	REV__COL14A1|p.E319K|1|0.26|ENSG00000187955|chr8:120203786-120203786|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	645.333984375	2	645.331556	1288.64856	0.67664	0.00043665	1.1104	0.00071659	1.7871	0.0011532	645.3323480430272	16.231	0.31269	16.231	15.952	16.265	0					10	5	3	0	0	0	0.7298	1	5444	5444		10.8	0.64894	1	2881600	+		10488	10223	6020	6061	10134	10134					0.01577995488560191
EVVTHMLDFKA	11	Unmodified	_EVVTHMLDFKA_					0	0	0			REV__COL14A1|p.E319K|1|0.26|ENSG00000187955|chr8:120203786-120203786|G/A|missense_variant	REV__COL14A1|p.E319K|1|0.26|ENSG00000187955|chr8:120203786-120203786|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	645.331556	1288.64856	0.67664	0.00043665	1.1104	0.00071659	1.7871	0.0011532	645.3323480430272	16.231	0.31269	16.231	15.952	16.265	0	-0.074461	-6.8951E-05	NaN	10.8	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2881600	+		10489	10223	6020	6061							0.01577995488560191
EVVTHMLDFKA	11	Unmodified	_EVVTHMLDFKA_					0	0	0			REV__COL14A1|p.E319K|1|0.26|ENSG00000187955|chr8:120203786-120203786|G/A|missense_variant	REV__COL14A1|p.E319K|1|0.26|ENSG00000187955|chr8:120203786-120203786|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	645.331556	1288.64856	0.63718	0.00041119	1.1663	0.00075264	1.8035	0.0011638	645.3323097699829	16.722	0.67785	16.38	15.839	16.516	-0.34183	0.074461	3.1433E-06	NaN	10.8	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22146000	+		10490	10223	6020	6061							0.01577995488560191
EVVTYKKRYK	10	Unmodified	_EVVTYKKRYK_					0	0	0			REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MSMS	HCT116MG_D190212_S1	1	657.3858032226562	2	657.382437	1312.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.889	1	50.889	50.389	51.389	0								0	0	0	0.92917	1	19429	19429		9.3831	0.63772	1		+		10491	12695	6021	6062	10135	10135					0.10645609902644537
EVYEKHTY	8	Unmodified	_EVYEKHTY_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MSMS	HCT116MG_D190212_S2	2	534.7518310546875	2	534.753464	1067.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.014	1	23.631	23.131	24.131	-0.38324								0	0	0	0.8837	1	8586	8586		14.582	2.0501	1		+		10492	13951	6022	6063	10136	10136					-0.03867126690374789
EVYPLRLSLHY	11	Unmodified	_EVYPLRLSLHY_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MSMS	HCT116MG_D190212_S2	2	695.3799438476562	2	695.379894	1388.74524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.361	1	44.276	43.776	44.776	-0.084797								0	0	0	0.95581	1	16845	16845		3.2813	0	1		+		10493	13979	6023	6064	10137	10137					0.06641306040046402
EVYWRLWKEWL	11	Unmodified	_EVYWRLWKEWL_					0	0	0			REV__ENST00000580496.1_1_17:61713981-61714308:+|nuORF	REV__ENST00000580496.1_1_17:61713981-61714308:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	804.4220581054688	2	804.422094	1606.82963	0.85667	0.00068912	-0.41407	-0.00033309	0.4426	0.00035603	804.4216043435011	21.721	0.26038	21.721	21.542	21.802	0					14	4	4	0	0	0	0.74191	1	7657	7657		4.5289	1.5336	1	22883000	+		10494	16622	6024	6065	10138	10138					0.050492568567960916
EVYWRLWKEWL	11	Unmodified	_EVYWRLWKEWL_					0	0	0			REV__ENST00000580496.1_1_17:61713981-61714308:+|nuORF	REV__ENST00000580496.1_1_17:61713981-61714308:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	804.422094	1606.82963	0.85667	0.00068912	-0.41407	-0.00033309	0.4426	0.00035603	804.4216043435011	21.721	0.26038	21.721	21.542	21.802	0	-0.04819	7.1183E-06	NaN	4.5289	14	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22883000	+		10495	16622	6024	6065							0.050492568567960916
EVYWRLWKEWL	11	Unmodified	_EVYWRLWKEWL_					0	0	0			REV__ENST00000580496.1_1_17:61713981-61714308:+|nuORF	REV__ENST00000580496.1_1_17:61713981-61714308:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	804.422094	1606.82963	0.9496	0.00076388	-0.44413	-0.00035727	0.50547	0.00040661	804.9233007204654	22.203	0.15637	21.818	21.687	21.843	-0.3852	0.04819	-4.1245E-05	NaN	4.5289	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3123200	+		10496	16622	6024	6065							0.050492568567960916
EWALTLIHPK	10	Unmodified	_EWALTLIHPK_					0	0	0			REV__ENST00000586888.1_1_19:30157871-30158024:+|nuORF	REV__ENST00000586888.1_1_19:30157871-30158024:+|nuORF	MSMS	HCT116MG_D190212_S2	2	403.23211669921875	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2286	1	7.0128	6.5128	7.5128	-0.21581								0	0	0	0.97045	1	2265	2265		0.15932	0	1		+		10497	16660	6025	6066	10139	10139					0.08102266811101799
EWCNSQTDCK	10	Unmodified	_EWCNSQTDCK_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MSMS	HCT116MG_D190212_S2	2	405.158447265625	3	405.158596	1212.45396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9349	1	1.9217	1.4217	2.4217	-0.013221								0	0	0	0.96804	1	626	626		0.69767	0.24315	1		+		10498	10547	6026	6067	10140	10140					-0.14377123658869095
EWFSETFQK	9	Unmodified	_EWFSETFQK_					0	0	0		ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1;ENST00000586638.5_1_19:45419611-45422484:+|nuORF;ENST00000589781.1_1_19:45418129-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	601.2809448242188	2	601.279846	1200.54514	0.48808	0.00029347	1.1623	0.00069886	1.6504	0.00099233	601.2805067775774	47.323	0.22342	47.323	47.217	47.441	0					6	4	2	0	0	0	0.041798	1	18003	18003		78.728	46.423	1	17872000			10499	3064	6027	6068	10141	10141					-0.04711168627591178
EWFSETFQK	9	Unmodified	_EWFSETFQK_					0	0	0		ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1;ENST00000586638.5_1_19:45419611-45422484:+|nuORF;ENST00000589781.1_1_19:45418129-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	MSMS	HCT116MG_D190212_S3	3	601.27978515625	2	601.279846	1200.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.67	1	47.355	46.855	47.855	-0.31525								0	0	0	0.012293	1	17908	17908		103.35	59.495	1				10500	3064	6027	6068	10142	10142					-0.04711168627591178
EWFSETFQK	9	Unmodified	_EWFSETFQK_					0	0	0		ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1;ENST00000586638.5_1_19:45419611-45422484:+|nuORF;ENST00000589781.1_1_19:45418129-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	601.2803955078125	2	601.279846	1200.54514	1.3619	0.00081889	-0.99918	-0.00060078	0.36273	0.0002181	601.7808867090113	47.667	0.22063	47.297	47.157	47.377	-0.36907					10	8	2	0	0	0	0.01405	1	17632	17632		103.35	59.495	1	9562900			10501	3064	6027	6068	10143	10143					-0.04711168627591178
EWHKLLPK	8	Unmodified	_EWHKLLPK_					0	0	0			REV__nc|ENSG00000237541|P01909|HLA-DQA1	REV__nc|ENSG00000237541|P01909|HLA-DQA1	MULTI-SECPEP	HCT116MG_D190212_S1	1	526.2589721679688	2	525.808377	1049.6022	0.41132	0.00021627	0.28082	0.00014766	0.69214	0.00036393	525.8085651957571	46.974	0.67382	46.974	46.543	47.217	0					18	12	2	0	0	0	0.32676	1	17738	17738		4.756	0.42677	1	18069000	+		10502	17305	6028	6069	10144	10144					0.07938343439445816
EWKKERISK	9	Unmodified	_EWKKERISK_					0	0	0		ENST00000561091.1_1_15:45466604-45470396:-|nuORF;nc|ENSG00000138606|Q7M4L6-2|SHF;nc|ENSG00000138606|Q7M4L6|SHF;ENSG00000138606|ENST00000690270|SHF	ENST00000561091.1_1_15:45466604-45470396:-|nuORF	ENST00000561091.1_1_15:45466604-45470396:-|nuORF	MSMS	HCT116MG_D190212_S3	3	602.3462524414062	2	602.345855	1202.67716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.614	1	47.299	46.799	47.799	-0.31525								0	0	0	0.768	1	17885	17885		7.9102	0.62092	1				10503	3569	6029	6070	10145	10145					0.08392481180044342
EWKYERYIINW	11	Unmodified	_EWKYERYIINW_					0	0	0			REV__tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	REV__tr|U7STL7|U7STL7_FUSNURNApolymerasesubunitsigmaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01392PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	533.9366455078125	3	533.936664	1598.78816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.941	1	10.941	10.441	11.441	0								0	0	0	0.96208	1	3399	3399		0	0	1		+		10504	17805	6030	6071	10146	10146					0.01272076097484387
EWLRKLQKRKV	11	Unmodified	_EWLRKLQKRKV_					0	0	0		NCKAP5|p.G404W|1|0.16|ENSG00000176771|chr2:132785601-132785601|C/A|missense_variant	NCKAP5|p.G404W|1|0.16|ENSG00000176771|chr2:132785601-132785601|C/A|missense_variant	NCKAP5|p.G404W|1|0.16|ENSG00000176771|chr2:132785601-132785601|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	742.465087890625	2	742.464627	1482.9147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.009	1	60.009	59.509	60.509	0								0	0	0	0.96208	1	23125	23125		0	0	1				10505	9687	6031	6072	10147	10147					0.19256047113208297
EWMFQNAYEKP	11	Unmodified	_EWMFQNAYEKP_					0	0	0			REV__nc|ENSG00000145321|P02774-2|GC	REV__nc|ENSG00000145321|P02774-2|GC	MSMS	HCT116MG_D190212_S4	4	721.8270263671875	2	721.824095	1441.63364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.301	1	37.918	37.418	38.418	-0.38283								0	0	0	0.95273	1	14032	14032		4.897	1.6157	1		+		10506	12447	6032	6073	10148	10148					-0.06951496379406308
EWNEPEKKPK	10	Unmodified	_EWNEPEKKPK_					0	0	0			REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	REV__tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	429.08868408203125	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6927	1	8.4487	7.9487	8.9487	-0.24401								0	0	0	0.96804	1	2715	2715		0.69767	0.24315	1		+		10507	17894	6033	6074	10149	10149					0.020521672178801964
EWREERWLLHK	11	Unmodified	_EWREERWLLHK_					0	0	0			REV__PUM1|p.Q133Kfs*68|1|0.35|ENSG00000134644|chr1:31028832-31028832|A/-|frameshift_variant	REV__PUM1|p.Q133Kfs*68|1|0.35|ENSG00000134644|chr1:31028832-31028832|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	528.2817993164062	3	527.947675	1580.82119	0.41738	0.00022036	-0.8434	-0.00044527	-0.42602	-0.00022492	528.2815499148869	39.147	0.42354	38.846	38.716	39.14	-0.30137					12	7	2	0	0	0	0.74191	1	14552	14552		0.45452	0.37117	1	12674000	+		10508	17455	6034	6075	10150	10150					0.054017029401620675
EWRYYFFSLFQ	11	Unmodified	_EWRYYFFSLFQ_					0	0	0		PAQR8|p.W80Gfs*72|1|0.17|ENSG00000170915|chr6:52403450-52403450|C/-|frameshift_variant;PAQR8|p.F163Sfs*45|1|0.32|ENSG00000170915|chr6:52403699-52403702|TTTC/-|frameshift_variant;ENSG00000170915|ENST00000442253|PAQR8	PAQR8|p.W80Gfs*72|1|0.17|ENSG00000170915|chr6:52403450-52403450|C/-|frameshift_variant	PAQR8|p.W80Gfs*72|1|0.17|ENSG00000170915|chr6:52403450-52403450|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	793.3753051757812	2	793.377352	1584.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.908	1	25.618	25.118	26.118	-0.29022								0	0	0	0.9598	1	9204	9204		1.1933	0	1				10509	5167	6035	6076	10151	10151					-0.028829978225985542
EWVKWTKEEL	10	Unmodified	_EWVKWTKEEL_					0	0	0		CAMTA1|p.A207V|1|0.14|ENSG00000171735|chr1:7640509-7640509|C/T|missense_variant	CAMTA1|p.A207V|1|0.14|ENSG00000171735|chr1:7640509-7640509|C/T|missense_variant	CAMTA1|p.A207V|1|0.14|ENSG00000171735|chr1:7640509-7640509|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	674.3508911132812	2	674.350803	1346.68705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.675	1	41.372	40.872	41.872	-0.30257								0	0	0	0.94107	1	15502	15502		6.7232	0.51738	1				10510	318	6036	6077	10152	10152					0.02757624394735103
EWWLHPPS	8	Unmodified	_EWWLHPPS_					0	0	0			REV__ENST00000530758.1_1_3:10168265-10168481:+|nuORF	REV__ENST00000530758.1_1_3:10168265-10168481:+|nuORF	MSMS	HCT116MG_D190212_S4	4	351.17034912109375	3	351.171382	1050.49232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.606	1	55.294	54.794	55.794	-0.312								0	0	0	0.8837	1	20825	20825		3.5965	1.098	1		+		10511	16313	6037	6078	10153	10153					-0.030910818997199385
EWWLHYYSEDY	11	Unmodified	_EWWLHYYSEDY_					0	0	0			REV__ENST00000547733.1_1_12:39687284-39687350:-|nuORF	REV__ENST00000547733.1_1_12:39687284-39687350:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	795.83056640625	2	795.830431	1589.64631	0.70981	0.00056489	-0.2914	-0.00023191	0.41841	0.00033298	795.8302854997127	19.43	0.15598	19.43	19.339	19.495	0					4	2	2	0	0	0	0.74191	1	6756	6756		2.9952	2.6446	1	3489700	+		10512	16411	6038	6079	10154	10154					-0.12492761715520828
EWYHVDFQR	9	Unmodified	_EWYHVDFQR_					0	0	0		NRXN1|p.Q932Pfs*14|1|0.32|ENSG00000179915|chr2:50497419-50497420|-/A|frameshift_variant;NRXN1|p.S590Yfs*14|1|0.43|ENSG00000179915|chr2:50538627-50538628|-/T|frameshift_variant;NRXN1|p.S820Vfs*2|1|0.13|ENSG00000179915|chr2:50506534-50506534|T/-|frameshift_variant;nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	NRXN1|p.Q932Pfs*14|1|0.32|ENSG00000179915|chr2:50497419-50497420|-/A|frameshift_variant	NRXN1|p.Q932Pfs*14|1|0.32|ENSG00000179915|chr2:50497419-50497420|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	427.2016296386719	3	427.2	1278.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.287	1	58.017	57.517	58.517	-0.26932								0	0	0	0.76902	1	22170	22170		2.4985	0.75621	1				10513	9708	6039	6080	10155	10155					-0.04997541784882742
EYCAGAFK	8	Unmodified	_EYCAGAFK_					0	0	0		ZFP91|p.R379G|1|0.21|ENSG00000186660|chr11:58616748-58616748|C/G|missense_variant	ZFP91|p.R379G|1|0.21|ENSG00000186660|chr11:58616748-58616748|C/G|missense_variant	ZFP91|p.R379G|1|0.21|ENSG00000186660|chr11:58616748-58616748|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	444.6998596191406	2	444.699646	887.384739	0.15135	6.7307E-05	0.064642	2.8746E-05	0.216	9.6053E-05	444.69970079502554	33.568	0.2595	33.278	33.096	33.356	-0.29013					7	4	2	0	0	0	0.85329	1	12341	12341		4.756	4.756	1	6197000			10514	18714	6040	6081	10156	10156					-0.06345794825449502
EYCECHYS	8	Unmodified	_EYCECHYS_					0	0	0			REV__MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant	REV__MATN3|p.T387Hfs*10|2|0.28|ENSG00000132031|chr2:20000450-20000450|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	517.1708374023438	2	517.173135	1032.33172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.822	1	58.822	58.322	59.322	0								0	0	0	0.8837	1	22670	22670		0.69038	0.16561	1		+		10515	11980	6041	6082	10157	10157					-0.1831554067041452
EYDEEEDEDP	10	Unmodified	_EYDEEEDEDP_					0	0	0			REV__ENST00000606725.5_1_19:19414686-19431305:-|nuORF	REV__ENST00000606725.5_1_19:19414686-19431305:-|nuORF	MSMS	HCT116MG_D190212_S4	4	423.8130798339844	3	423.814094	1268.42045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.487	1	12.318	11.818	12.818	-0.16903								0	0	0	0.96937	1	3880	3880		0.13989	0	1		+		10516	11269	6042	6083	10158	10158					-0.20302175416077262
EYEFRVVAGNS	11	Unmodified	_EYEFRVVAGNS_					0	0	0		CNTN6|p.P893Qfs*22|1|0.33|ENSG00000134115|chr3:1385766-1385766|C/-|frameshift_variant;CNTN6|p.V894Sfs*25|1|0.27|ENSG00000134115|chr3:1385765-1385766|-/C|frameshift_variant;CNTN6|p.M994Yfs*15|1|0.07|ENSG00000134115|chr3:1402479-1402480|-/T|frameshift_variant;ENSG00000134115|ENST00000446702|CNTN6	CNTN6|p.P893Qfs*22|1|0.33|ENSG00000134115|chr3:1385766-1385766|C/-|frameshift_variant	CNTN6|p.P893Qfs*22|1|0.33|ENSG00000134115|chr3:1385766-1385766|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	424.20794677734375	3	424.206932	1269.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.438	1	36.053	35.553	36.553	-0.38558								0	0	0	0.94538	1	13334	13334		4.4062	0.52982	1				10517	502	6043	6084	10159	10159					-0.025049961958302447
EYEGHELY	8	Unmodified	_EYEGHELY_					0	0	0			REV__nc|ENSG00000108852|Q14168-5|MPP2	REV__nc|ENSG00000108852|Q14168-5|MPP2	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2223510742188	2	520.221997	1038.42944	0.084998	4.4218E-05	0.18905	9.8346E-05	0.27404	0.00014256	520.222067860009	47.875	0.4686	47.56	47.359	47.828	-0.31551					13	8	2	0	0	0	0.82475	1	18009	18009		8.5933	2.8329	1	4745900	+		10518	11280	6044	6085	10160	10160					-0.08823692478404155
EYERFFKY	8	Unmodified	_EYERFFKY_					0	0	0		DDX39A|p.S136F|1|0.62|ENSG00000123136|chr19:14411528-14411528|G/A|missense_variant	DDX39A|p.S136F|1|0.62|ENSG00000123136|chr19:14411528-14411528|G/A|missense_variant	DDX39A|p.S136F|1|0.62|ENSG00000123136|chr19:14411528-14411528|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	591.7783813476562	2	591.284931	1180.55531	0.58721	0.00034721	0.37364	0.00022093	0.96085	0.00056814	591.2848706075641	51.171	0.31023	50.992	50.81	51.12	-0.17868					9	5	3	0	0	0	0.65382	2	19641	19641;19651		27.629	13.223	1	20355000			10519	654	6045	6086	10161;10162	10161					-0.027745609023213547
EYFKSQCHCC	10	Unmodified	_EYFKSQCHCC_					0	0	0			REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	624.2365112304688	2	624.235744	1246.45693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7539	1	5.6057	5.1057	6.1057	-0.14816								0	0	0	0.96911	1	1822	1822		0.45834	0	1		+		10520	17347	6046	6087	10163	10163					-0.15643571805685497
EYFKSQCHCC	10	Unmodified	_EYFKSQCHCC_					0	0	0			REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	624.236572265625	2	624.235744	1246.45693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8134	1	9.5487	9.0487	10.049	-0.26472								0	0	0	0.96911	1	3079	3079		0.45834	0	1		+		10521	17347	6046	6087	10164	10164					-0.15643571805685497
EYFKSQCHCC	10	Unmodified	_EYFKSQCHCC_					0	0	0			REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	624.2363891601562	2	624.235744	1246.45693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.318	1	10.054	9.5536	10.554	-0.26472								0	0	0	0.96911	1	3257	3257		0.45834	0	1		+		10522	17347	6046	6087	10165	10165					-0.15643571805685497
EYFKSQCHCC	10	Unmodified	_EYFKSQCHCC_					0	0	0			REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	624.236328125	2	624.235744	1246.45693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6233	1	2.6786	2.1786	3.1786	0.055284								0	0	0	0.96911	1	797	797		0.45834	0	1		+		10523	17347	6046	6087	10166	10166					-0.15643571805685497
EYFKSQCHCC	10	Unmodified	_EYFKSQCHCC_					0	0	0			REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	624.236572265625	2	624.235744	1246.45693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.045853	1	-0.21871	-0.71871	0.28129	-0.26456								0	0	0	0.96911	1	18	18		0.45834	0	1		+		10524	17347	6046	6087	10167	10167					-0.15643571805685497
EYFKSQCHCC	10	Unmodified	_EYFKSQCHCC_					0	0	0			REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	REV__NID2|p.G518E|1|0.38|ENSG00000087303|chr14:52042808-52042808|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	624.2362060546875	2	624.235744	1246.45693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7508	1	9.5416	9.0416	10.042	-0.20921								0	0	0	0.96911	1	2989	2989		0.45834	0	1		+		10525	17347	6046	6087	10168	10168					-0.15643571805685497
EYHRYREQEYR	11	Unmodified	_EYHRYREQEYR_					0	0	0		ENSG00000138398|ENST00000260970|PPIG	ENSG00000138398|ENST00000260970|PPIG	ENSG00000138398|ENST00000260970|PPIG	MSMS	HCT116MG_D190212_S2	2	543.5894775390625	3	543.590327	1627.74915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.238	1	49.084	48.584	49.584	-0.15405								0	0	0	0.96121	1	18838	18838		0.45452	0	1				10526	3555	6047	6088	10169	10169					-0.0396125620420662
EYHWSVYE	8	Unmodified	_EYHWSVYE_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-SECPEP	HCT116MG_D190212_S2	2	556.7379150390625	2	556.737814	1111.46108	0.33482	0.00018641	-0.096829	-5.3908E-05	0.23799	0.0001325	556.7375527971273	33.928	0.25939	33.753	33.657	33.916	-0.17511					5	4	2	0	0	0	0.26426	1	12639	12639		34.102	1.797	1	13785000			10527	5126	6048	6089	10170	10170					-0.09019699724444763
EYHWSVYE	8	Unmodified	_EYHWSVYE_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-MSMS	HCT116MG_D190212_S3	3	556.7381591796875	2	556.737814	1111.46108	0.43696	0.00024327	0.2549	0.00014191	0.69186	0.00038519	556.7379074428154	34.192	0.26019	33.897	33.767	34.027	-0.29419					7	4	2	0	0	0	0.58007	1	12599	12599		34.102	34.102	1	13995000			10528	5126	6048	6089	10171	10171					-0.09019699724444763
EYHWSVYE	8	Unmodified	_EYHWSVYE_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-MSMS	HCT116MG_D190212_S4	4	556.7379760742188	2	556.737814	1111.46108	0.33143	0.00018452	0.026595	1.4806E-05	0.35802	0.00019932	556.7377133756418	34.287	0.25966	33.902	33.724	33.984	-0.38558					12	4	4	0	0	0	0.66231	1	12518	12518		26.884	5.3467	1	8000300			10529	5126	6048	6089	10172	10172					-0.09019699724444763
EYHWSVYE	8	Unmodified	_EYHWSVYE_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-MATCH	HCT116MG_D190212_S1	1		2	556.737814	1111.46108	0.434	0.00024163	-0.17303	-9.6331E-05	0.26098	0.00014529	556.737675576421	33.841	0.15668	33.841	33.763	33.919	0	-0.0073023	-0.00031913	NaN	34.102	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3296100			10530	5126	6048	6089							-0.09019699724444763
EYHWSVYE	8	Unmodified	_EYHWSVYE_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	556.737814	1111.46108	0.43696	0.00024327	0.2549	0.00014191	0.69186	0.00038519	556.7379074428154	34.192	0.26019	33.897	33.767	34.027	-0.29419	0.049024	0.00015735	NaN	34.102	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13995000			10531	5126	6048	6089							-0.09019699724444763
EYIHDFNRR	9	Unmodified	_EYIHDFNRR_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MSMS	HCT116MG_D190212_S4	4	624.8750610351562	2	625.307261	1248.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.731	1	43.357	42.857	43.857	-0.37433								0	0	0	0.76923	1	16085	16085		3.5965	0.31518	1				10532	4173	6049	6090	10173	10173					-0.014387370363010632
EYLLINLTEEY	11	Unmodified	_EYLLINLTEEY_					0	0	0			REV__nc|ENSG00000110906|Q9H3F6-3|KCTD10	REV__nc|ENSG00000110906|Q9H3F6-3|KCTD10	MSMS	HCT116MG_D190212_S2	2	700.3552856445312	2	700.353208	1398.69186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.346	1	42.276	41.776	42.776	-0.069191								0	0	0	0.93717	1	16026	16026		13.042	2.9685	1		+		10533	11414	6050	6091	10174	10174					0.008464637468478031
EYMKKIKCC	9	Unmodified	_EYMKKIKCC_					0	0	0			REV__PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	REV__PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	573.277099609375	2	573.279423	1144.54429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.643	1	32.263	31.763	32.763	-0.37924								0	0	0	0.76603	1	11897	11897		14.838	0.93222	1		+		10534	10624	6051	6092	10175	10175					-0.022197458641130652
EYMKKIKCC	9	Unmodified	_EYMKKIKCC_					0	0	0			REV__PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	REV__PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	573.277099609375	2	573.279423	1144.54429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.325	1	32.943	32.443	33.443	-0.38223								0	0	0	0.76739	1	12130	12130		10.074	0.6908	1		+		10535	10624	6051	6092	10176	10176					-0.022197458641130652
EYMKYLAYKQ	10	Unmodified	_EYMKYLAYKQ_					0	0	0		ENSG00000196968|ENST00000372841|FUT11;nc|ENSG00000196968|Q495W5-2|FUT11;ENST00000465695.1_1_10:75532330-75533574:+|nuORF	ENSG00000196968|ENST00000372841|FUT11;ENST00000465695.1_1_10:75532330-75533574:+|nuORF	ENSG00000196968|ENST00000372841|FUT11	MSMS	HCT116MG_D190212_S1	1	668.83544921875	2	668.833931	1335.65331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.007	1	11.007	10.507	11.507	0								0	0	0	0.97045	1	3426	3426		0	0	1				10536	6110;8096	6052	6093	10177	10177					-0.0010912036866557173
EYNTNDPP	8	Unmodified	_EYNTNDPP_					0	0	0		nc|ENSG00000161040|Q8NEE6-4|FBXL13;nc|ENSG00000161040|Q8NEE6-3|FBXL13;nc|ENSG00000161040|Q8NEE6-2|FBXL13;nc|ENSG00000161040|Q8NEE6|FBXL13;ENSG00000161040|ENST00000440067|FBXL13	nc|ENSG00000161040|Q8NEE6-4|FBXL13	nc|ENSG00000161040|Q8NEE6-4|FBXL13	MSMS	HCT116MG_D190212_S4	4	475.197021484375	2	475.198522	948.38249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.939	1	26.627	26.127	27.127	-0.3114								0	0	0	0.8837	1	9620	9620		13.508	3.3245	1				10537	4479	6053	6094	10178	10178					-0.09376552029573304
EYRTEQAQHHH	11	Unmodified	_EYRTEQAQHHH_					0	0	0			REV__ENSG00000185761|ENST00000330475|ADAMTSL5	REV__ENSG00000185761|ENST00000330475|ADAMTSL5	MULTI-MSMS	HCT116MG_D190212_S4	4	718.3255615234375	2	718.326713	1434.63887	0.63664	0.00045731	-1.267	-0.00091011	-0.63035	-0.0004528	718.3258913263753	22.961	0.62803	22.723	22.393	23.021	-0.23758					17	11	2	0	0	0	0.74191	1	7950	7950		5.7319	0.83484	1	4025700	+		10538	13855	6054	6095	10179	10179					-0.06106056472594901
EYSFPFTFPL	10	Unmodified	_EYSFPFTFPL_					0	0	0		ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	HCT116MG_D190212_S3	3	624.2362670898438	2	624.30279	1246.59103	0.56698	0.00035396	0.54438	0.00033986	1.1114	0.00069382	624.3030019402562	29.556	0.6862	29.32	29.135	29.822	-0.23655					26	12	4	0	0	0	0.30526	1	10669	10669		14.838	8.1151	1	44584000			10539	3981	6055	6096	10180	10180					-0.022405234453344747
EYSRYQRWRHL	11	Unmodified	_EYSRYQRWRHL_					0	0	0		nc|ENSG00000174574|Q9H9L7-2|AKIRIN1;ENSG00000174574|ENST00000432648|AKIRIN1	nc|ENSG00000174574|Q9H9L7-2|AKIRIN1	nc|ENSG00000174574|Q9H9L7-2|AKIRIN1	MSMS	HCT116MG_D190212_S3	3	531.7566528320312	3	531.939291	1592.79604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.002	1	21.036	20.536	21.536	0.034473								0	0	0	0.95976	1	7296	7296		1.2148	0.76031	1				10540	5337	6056	6097	10181	10181					0.023356481375913063
EYTVRTDTQSP	11	Unmodified	_EYTVRTDTQSP_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.Q1108Sfs*17|1|0.35|ENSG00000133401|chr5:32074423-32074423|C/-|frameshift_variant;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-MSMS	HCT116MG_D190212_S4	4	648.8071899414062	2	648.806956	1295.59936	0.46399	0.00030104	0.14321	9.2913E-05	0.6072	0.00039395	648.8069273199615	31.37	1.1066	31	30.281	31.387	-0.37027					44	22	3	0	0	0	0.7298	1	11408	11408		10.8	1.4164	1	5152900			10541	3240	6057	6098	10182	10182					-0.03661621266678594
EYVKTNSRY	9	Unmodified	_EYVKTNSRY_					0	0	0		ENST00000540583.5_1_12:12878851-12879297:+|nuORF	ENST00000540583.5_1_12:12878851-12879297:+|nuORF	ENST00000540583.5_1_12:12878851-12879297:+|nuORF	MSMS	HCT116MG_D190212_S3	3	580.2894287109375	2	580.290745	1158.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.191	1	35.891	35.391	36.391	-0.30042								0	0	0	0.76669	1	13364	13364		12.532	0.29089	1				10542	8690	6058	6099	10183	10183					-0.0060036387899344845
EYVVRWYYDKQ	11	Unmodified	_EYVVRWYYDKQ_					0	0	0		ENSG00000215018|ENST00000399429|COL28A1	ENSG00000215018|ENST00000399429|COL28A1	ENSG00000215018|ENST00000399429|COL28A1	MSMS	HCT116MG_D190212_S4	4	774.8770751953125	2	774.877716	1547.74088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.142	1	20.932	20.432	21.432	-0.20959								0	0	0	0.95731	1	7281	7281		2.4985	1.169	1				10543	6444	6059	6100	10184	10184					-0.011082031735440978
EYYHLTNYLY	10	Unmodified	_EYYHLTNYLY_					0	0	0			REV__MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	REV__MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	690.2709350585938	2	689.819335	1377.62412	0.7963	0.0005493	-2.8186	-0.0019443	-2.0223	-0.001395	689.8183803328916	44.62	0.26268	44.535	44.428	44.691	-0.084801					7	4	2	0	0	0	0.8224	1	16908	16908		10.151	0.76745	1	8957300	+		10544	11454	6060	6101	10185	10185					-0.04958941393283567
EYYKKTLL	8	Unmodified	_EYYKKTLL_					0	0	0		GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant;ENSG00000121957|ENST00000264126|GPSM2	GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant	GPSM2|p.F632Sfs*31|1|0.44|ENSG00000121957|chr1:108929776-108929776|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	353.20123291015625	3	353.202459	1056.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.189	1	24.909	24.409	25.409	-0.27958								0	0	0	0.8837	1	8914	8914		6.7232	1.8262	1				10545	2744	6061	6102	10186	10186					0.05951797762872957
EYYNPSGPP	9	Unmodified	_EYYNPSGPP_					0	0	0		WASF3|p.P346L|1|0.39|ENSG00000132970|chr13:26682660-26682660|C/T|missense_variant;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3	WASF3|p.P346L|1|0.39|ENSG00000132970|chr13:26682660-26682660|C/T|missense_variant	WASF3|p.P346L|1|0.39|ENSG00000132970|chr13:26682660-26682660|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	512.223876953125	2	512.224539	1022.43453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.494	1	24.41	23.91	24.91	-0.083694								0	0	0	0.768	1	8701	8701		7.9102	0	1				10546	3220	6062	6103	10187	10187					-0.07579388615795324
FAEHNDLQY	9	Unmodified	_FAEHNDLQY_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	568.7545166015625	2	568.753995	1135.49344	0.47199	0.00026845	0.41722	0.0002373	0.88921	0.00050574	568.7542442566638	32.82	0.29399	32.82	32.691	32.985	0					12	5	3	0	0	0	0.041798	1	12145	12145		78.728	48.503	1	62299000			10547	769	6063	6104	10188	10188					-0.06888912321483076
FAEHNDLQY	9	Unmodified	_FAEHNDLQY_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	568.7539672851562	2	568.753995	1135.49344	0.66457	0.00037797	0.034153	1.9425E-05	0.69872	0.0003974	568.7538785133275	33.029	0.31007	32.818	32.638	32.948	-0.21135					16	5	4	0	0	0	0.014023	2	12242	12242;12280		103.42	63.47	1	224320000			10548	769	6063	6104	10189;10190	10189					-0.06888912321483076
FAEKKLCL	8	Unmodified	_FAEKKLCL_					0	0	0		ENST00000260323.15_1_15:54435829-54528631:+|nuORF	ENST00000260323.15_1_15:54435829-54528631:+|nuORF	ENST00000260323.15_1_15:54435829-54528631:+|nuORF	MSMS	HCT116MG_D190212_S1	1	476.27008056640625	2	476.270238	950.525924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.208	1	32.208	31.708	32.708	0								0	0	0	0.8837	1	11877	11877		4.756	0	1				10549	6838	6064	6105	10191	10191					0.048682035478236685
FAEYRSRL	8	Unmodified	_FAEYRSRL_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MULTI-MSMS	HCT116MG_D190212_S2	2	521.27685546875	2	521.277441	1040.54033	0.60246	0.00031405	-1.5687	-0.0008177	-0.9662	-0.00050366	521.2763374256066	34.532	0.25758	34.356	34.227	34.485	-0.17512					6	4	2	0	0	0	0.55794	1	12870	12870		36.044	1.9418	1	16683000	+		10550	12356	6065	6106	10192	10192					0.02167992020326892
FAFVTFLTVS	10	Unmodified	_FAFVTFLTVS_					0	0	0			REV__ENSG00000118160|ENST00000236877|SLC8A2	REV__ENSG00000118160|ENST00000236877|SLC8A2	MSMS	HCT116MG_D190212_S4	4	566.4633178710938	2	566.307875	1130.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.332	1	58.043	57.543	58.543	-0.28879								0	0	0	0.95648	1	21921	21921		3.2813	0.28607	1		+		10551	11629	6066	6107	10193	10193					0.04112084279881856
FAGIYQQP	8	Unmodified	_FAGIYQQP_					0	0	0			REV__tr|U7STU7|U7STU7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01575PE=4SV=1	REV__tr|U7STU7|U7STU7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01575PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	462.23455810546875	2	462.23471	922.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.424	1	25.318	24.818	25.818	-0.10618								0	0	0	0.80194	1	9076	9076		22.453	5.5103	1		+		10552	17812	6067	6108	10194	10194					-0.00946173165334585
FAIRGMLKTF	10	Unmodified	_FAIRGMLKTF_					0	0	0		HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	395.22662353515625	3	395.226722	1182.65834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.369	1	47.054	46.554	47.554	-0.31525								0	0	0	0.95351	1	17787	17787		1.9064	0.83491	1				10553	5269	6068	6109	10195	10195					0.0743122828464493
FAIVKKRSL	9	Unmodified	_FAIVKKRSL_					0	0	0			REV__OR2D2|p.F107Lfs*11|1|0.18|ENSG00000166368|chr11:6892180-6892180|A/-|frameshift_variant	REV__OR2D2|p.F107Lfs*11|1|0.18|ENSG00000166368|chr11:6892180-6892180|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	531.4287719726562	2	531.345126	1060.6757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.316	1	58.146	57.646	58.646	-0.1703								0	0	0	0.76967	1	22535	22535		2.0598	0.57785	1		+		10554	13102	6069	6110	10196	10196					0.14778891881951495
FAKRCNSC	8	Unmodified	_FAKRCNSC_					0	0	0			REV__ZNF667|p.R182G|1|0.43|ENSG00000198046|chr19:56442451-56442451|T/C|missense_variant	REV__ZNF667|p.R182G|1|0.43|ENSG00000198046|chr19:56442451-56442451|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	465.28570556640625	2	464.710022	927.405491	0.02812	1.3068E-05	-3.4418	-0.0015994	-3.4137	-0.0015864	464.70802419626784	53.24	0.20847	52.905	52.827	53.035	-0.33473					5	3	2	0	0	0	0.32902	1	19905	19905		7.2892	2.0586	1	1281900	+		10555	14023	6070	6111	10197	10197					-0.06111527717439458
FALARSAT	8	Unmodified	_FALARSAT_					0	0	0			REV__ENST00000598846.1_1_1:1635046-1639660:-|nuORF	REV__ENST00000598846.1_1_1:1635046-1639660:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	418.7353820800781	2	418.734877	835.455202	-0.093569	-3.9181E-05	0.087916	3.6813E-05	-0.0056537	-2.3674E-06	418.7348463187962	21.682	0.36357	21.297	21.063	21.427	-0.38503					13	6	3	0	0	0	0.19608	1	7641	7641		74.423	10.186	1	70362000	+		10556	16737	6071	6112	10198	10198					0.030892465545093728
FALARSAT	8	Unmodified	_FALARSAT_					0	0	0			REV__ENST00000598846.1_1_1:1635046-1639660:-|nuORF	REV__ENST00000598846.1_1_1:1635046-1639660:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	419.2434387207031	2	418.734877	835.455202	-0.093569	-3.9181E-05	0.087916	3.6813E-05	-0.0056537	-2.3674E-06	418.7348463187962	21.682	0.36357	21.297	21.063	21.427	-0.38503					13	6	3	0	0	0	0.29766	1	7610	7610		9.3474	0	1	70362000	+		10557	16737	6071	6112	10199	10199					0.030892465545093728
FALELQIPFP	10	Unmodified	_FALELQIPFP_					0	0	0		ENST00000504490.2_1_4:113278594-113279089:+|nuORF	ENST00000504490.2_1_4:113278594-113279089:+|nuORF	ENST00000504490.2_1_4:113278594-113279089:+|nuORF	MSMS	HCT116MG_D190212_S1	1	392.2215881347656	3	392.221742	1173.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.329	1	32.329	31.829	32.829	0								0	0	0	0.96183	1	11926	11926		2.086	0.75636	1				10558	8443	6072	6113	10200	10200					0.06352059688288136
FALKAAAG	8	Unmodified	_FALKAAAG_					0	0	0			REV__ENST00000465329.1_1_2:148602721-148654078:+|nuORF	REV__ENST00000465329.1_1_2:148602721-148654078:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	374.7210388183594	2	374.721239	747.427924	0.081684	3.0609E-05	-0.32564	-0.00012203	-0.24396	-9.1416E-05	374.72106765777505	44.999	0.25288	44.69	44.532	44.785	-0.30927					9	4	3	0	0	0	0.71835	1	16844	16844		20.871	6.2895	1	6959400	+		10559	9843	6073	6114	10201	10201					0.044107630141297705
FALSETPD	8	Unmodified	_FALSETPD_					0	0	0		DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;DNAH12|p.F1712Lfs*4|1|0.34|ENSG00000174844|chr3:57428681-57428681|A/-|frameshift_variant;nc|ENSG00000174844|Q6ZR08|DNAH12	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	440.208984375	2	440.208358	878.402163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.71	1	19.335	18.835	19.835	-0.37503								0	0	0	0.75335	1	6849	6849		26.341	0	1				10560	699	6074	6115	10202	10202					-0.04190176018812508
FAPDGVLAVP	10	Unmodified	_FAPDGVLAVP_					0	0	0		ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	MULTI-MSMS	HCT116MG_D190212_S3	3	985.535888671875	1	985.535309	984.528032	0.79754	0.000786	-0.24914	-0.00024554	0.5484	0.00054047	985.5350919895299	54.792	0.41815	54.496	54.347	54.765	-0.29587					11	7	2	0	0	0	0.43205	1	20789	20789		39.957	3.9131	1	3312600			10561	5564	6075	6116	10203	10203					0.035149555572729696
FAPDGVLAVP	10	Unmodified	_FAPDGVLAVP_					0	0	0		ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	985.535309	984.528032	0.80078	0.0007892	-0.59532	-0.00058671	0.20546	0.00020249	985.5351655635512	54.733	0.40921	54.544	54.303	54.713	-0.18911	0.0067211	-0.00025473	NaN	39.957	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19549000			10562	5564	6075	6116							0.035149555572729696
FAPDGVLAVP	10	Unmodified	_FAPDGVLAVP_					0	0	0		ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	985.535309	984.528032	0.79754	0.000786	-0.24914	-0.00024554	0.5484	0.00054047	985.5350919895299	54.792	0.41815	54.496	54.347	54.765	-0.29587	-0.041091	8.6444E-05	NaN	39.957	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3312600			10563	5564	6075	6116							0.035149555572729696
FAPDGVLAVP	10	Unmodified	_FAPDGVLAVP_					0	0	0		ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	MULTI-MATCH	HCT116MG_D190212_S4	4		1	985.535309	984.528032	0.69171	0.00068171	-0.033581	-3.3095E-05	0.65813	0.00064861	985.5350677034814	54.889	0.36494	54.571	54.354	54.719	-0.31774	0.03437	0.00029889	NaN	39.957	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2358300			10564	5564	6075	6116							0.035149555572729696
FASGEVTTNG	10	Unmodified	_FASGEVTTNG_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3;ALPK3|p.Q675Sfs*30|1|0.18|ENSG00000136383|chr15:84840691-84840691|C/-|frameshift_variant;ALPK3|p.P971Tfs*8|1|0.17|ENSG00000136383|chr15:84857035-84857036|-/A|frameshift_variant;ALPK3|p.K970Nfs*12|3|0.26|ENSG00000136383|chr15:84857036-84857036|A/-|frameshift_variant;ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MSMS	HCT116MG_D190212_S3	3	491.7276306152344	2	491.727446	981.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.609	1	27.42	26.92	27.92	-0.18847								0	0	0	0.86471	1	9957	9957		20.454	1.1966	1				10565	3414	6076	6117	10204	10204					-0.051122901041367186
FATRFREK	8	Unmodified	_FATRFREK_					0	0	0			REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	MSMS	HCT116MG_D190212_S4	4	352.1965026855469	3	352.197931	1053.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.771	1	57.476	56.976	57.976	-0.29465								0	0	0	0.8837	1	21694	21694		1.6526	0	1		+		10566	13786	6077	6118	10205	10205					0.04731984774275588
FAVLLWEREK	10	Unmodified	_FAVLLWEREK_					0	0	0			REV__CCDC157|p.R540W|1|0.08|ENSG00000187860|chr22:30374037-30374037|C/T|missense_variant	REV__CCDC157|p.R540W|1|0.08|ENSG00000187860|chr22:30374037-30374037|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	430.913818359375	3	430.911679	1289.71321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.022	1	15.022	14.522	15.522	0								0	0	0	0.96377	1	4961	4961		0.69767	0.07084	1		+		10567	10110	6078	6119	10206	10206					0.07993938356867147
FAVPSLLSAF	10	Unmodified	_FAVPSLLSAF_					0	0	0			REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	351.20013427734375	3	351.198937	1050.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.983	1	43.983	43.483	44.483	0								0	0	0	0.93854	1	16632	16632		3.8763	1.1411	1		+		10568	9815	6079	6120	10207	10207					0.051718151084287456
FAVPSLLSAF	10	Unmodified	_FAVPSLLSAF_					0	0	0			REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	351.20001220703125	3	351.198937	1050.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.551	1	44.243	43.743	44.743	-0.30759								0	0	0	0.93854	1	16658	16658		3.8763	0.88109	1		+		10569	9815	6079	6120	10208	10208					0.051718151084287456
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S1	1	389.1116027832031	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7163	1	1.7163	1.2163	2.2163	0								0	0	0	0.8837	1	518	518		0	0	1		+		10570	15839	6080	6121	10209	10209					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S1	1	389.11175537109375	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2269	1	2.2269	1.7269	2.7269	0								0	0	0	0.8837	1	671	671		0	0	1		+		10571	15839	6080	6121	10210	10210					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S1	1	389.1116638183594	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.355	1	5.355	4.855	5.855	0								0	0	0	0.8837	1	1614	1614		0	0	1		+		10572	15839	6080	6121	10211	10211					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S1	1	389.1115417480469	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9208	1	6.9208	6.4208	7.4208	0								0	0	0	0.8837	1	2090	2090		0	0	1		+		10573	15839	6080	6121	10212	10212					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S1	1	389.1117248535156	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.605	1	10.605	10.105	11.105	0								0	0	0	0.8837	1	3266	3266		0.79363	0.79363	1		+		10574	15839	6080	6121	10213	10213					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S1	1	389.1116943359375	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.31	1	12.31	11.81	12.81	0								0	0	0	0.8837	1	3943	3943		0	0	1		+		10575	15839	6080	6121	10214	10214					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S1	1	389.11187744140625	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.621	1	63.621	63.121	64.121	0								0	0	0	0.8837	1	24577	24577		0	0	1		+		10576	15839	6080	6121	10215	10215					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S2	2	389.1116027832031	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.442	1	3.3798	2.8798	3.8798	-0.062129								0	0	0	0.8837	1	1096	1096		0	0	1		+		10577	15839	6080	6121	10216	10216					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S2	2	389.1117248535156	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.6104	1	6.4132	5.9132	6.9132	-0.19725								0	0	0	0.8837	1	2080	2080		0	0	1		+		10578	15839	6080	6121	10217	10217					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S2	2	389.1277160644531	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.44	1	11.158	10.658	11.658	-0.28186								0	0	0	0.8837	1	3686	3686		0	0	1		+		10579	15839	6080	6121	10218	10218					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S2	2	389.11175537109375	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.204	1	12.899	12.399	13.399	-0.30453								0	0	0	0.8837	1	4320	4320		0	0	1		+		10580	15839	6080	6121	10219	10219					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S3	3	389.1115417480469	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7169	1	2.7621	2.2621	3.2621	0.045237								0	0	0	0.8837	1	828	828		0	0	1		+		10581	15839	6080	6121	10220	10220					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S3	3	389.1117858886719	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9322	1	9.9647	9.4647	10.465	0.032559								0	0	0	0.8837	1	3005	3005		0	0	1		+		10582	15839	6080	6121	10221	10221					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S3	3	389.1805725097656	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.288	1	57.009	56.509	57.509	-0.27913								0	0	0	0.8837	1	21768	21768		0	0	1		+		10583	15839	6080	6121	10222	10222					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S4	4	389.1117858886719	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7501	1	2.4856	1.9856	2.9856	-0.26456								0	0	0	0.8837	1	844	844		0	0	1		+		10584	15839	6080	6121	10223	10223					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S4	4	389.1117248535156	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8889	1	6.6387	6.1387	7.1387	-0.25015								0	0	0	0.8837	1	2110	2110		0	0	1		+		10585	15839	6080	6121	10224	10224					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S4	4	389.111572265625	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3979	1	7.1563	6.6563	7.6563	-0.24153								0	0	0	0.8837	1	2264	2264		0	0	1		+		10586	15839	6080	6121	10225	10225					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S4	4	389.1116638183594	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9032	1	7.6616	7.1616	8.1616	-0.24153								0	0	0	0.8837	1	2418	2418		0	0	1		+		10587	15839	6080	6121	10226	10226					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S4	4	389.11151123046875	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9789	1	9.7796	9.2796	10.28	-0.1993								0	0	0	0.8837	1	3058	3058		0	0	1		+		10588	15839	6080	6121	10227	10227					-0.18564943469402806
FCCCGAAC	8	Unmodified	_FCCCGAAC_					0	0	0			REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF	MSMS	HCT116MG_D190212_S4	4	389.11175537109375	2	389.11298	776.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.489	1	10.299	9.7993	10.799	-0.18973								0	0	0	0.8837	1	3217	3217		0	0	1		+		10589	15839	6080	6121	10228	10228					-0.18564943469402806
FCCYCCCCP	9	Unmodified	_FCCYCCCCP_					0	0	0			REV__ENST00000220931.10_1_8:102803112-102803181:-|nuORF	REV__ENST00000220931.10_1_8:102803112-102803181:-|nuORF	MSMS	HCT116MG_D190212_S4	4	522.634521484375	2	522.632365	1043.25018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.817	1	27.495	26.995	27.995	-0.32157								0	0	0	0.77008	1	9975	9975		0.6015	0.6015	1		+		10590	14521	6081	6122	10229	10229					-0.2697172222156041
FCFGLIPI	8	Unmodified	_FCFGLIPI_					0	0	0			REV__CON__Q28107	REV__CON__Q28107	MSMS	HCT116MG_D190212_S2	2	455.24847412109375	2	455.248775	908.482997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.03	1	43.951	43.451	44.451	-0.078373								0	0	0	0.8837	1	16711	16711		6.3541	0.59368	1		+	+	10591	10266	6082	6123	10230	10230					0.02509433490399715
FCPFTPCC	8	Unmodified	_FCPFTPCC_					0	0	0			REV__ENST00000314471.10_1_19:39847690-39860405:+|nuORF	REV__ENST00000314471.10_1_19:39847690-39860405:+|nuORF	MSMS	HCT116MG_D190212_S1	1	459.1719970703125	2	459.171353	916.328152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2232	1	1.2232	0.7232	1.7232	0								0	0	0	0.8837	1	373	373		0.79363	0	1		+		10592	14855	6083	6124	10231	10231					-0.13335881978002817
FCSGVCGP	8	Unmodified	_FCSGVCGP_					0	0	0			REV__ENST00000422840.6_1_16:74486442-74486568:-|nuORF	REV__ENST00000422840.6_1_16:74486442-74486568:-|nuORF	MSMS	HCT116MG_D190212_S2	2	385.1528625488281	2	385.154017	768.293481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.236	1	7.0202	6.5202	7.5202	-0.21581								0	0	0	0.8837	1	2268	2268		0.69038	0.69038	1		+		10593	15531	6084	6125	10232	10232					-0.09993381794436118
FDDERDQKWD	10	Unmodified	_FDDERDQKWD_					0	0	0			REV__ENSG00000198759|ENST00000361306|EGFL6	REV__ENSG00000198759|ENST00000361306|EGFL6	MSMS	HCT116MG_D190212_S3	3	452.0603942871094	3	451.861713	1352.56331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.712	1	10.752	10.252	11.252	0.039975								0	0	0	0.96864	1	3255	3255		0.56317	0	1		+		10594	14148	6085	6126	10233	10233					-0.09887078443534847
FDEKEKYT	8	Unmodified	_FDEKEKYT_					0	0	0			REV__nc|ENSG00000159593|Q13564-3|NAE1	REV__nc|ENSG00000159593|Q13564-3|NAE1	MULTI-SECPEP	HCT116MG_D190212_S3	3	530.2808837890625	2	530.253297	1058.49204	0.39511	0.00020951	-0.1181	-6.2625E-05	0.277	0.00014688	530.2531292042542	40.387	0.2604	40.085	39.903	40.163	-0.30161					6	4	2	0	0	0	0.30703	1	14997	14997		18.135	2.2878	1	5002600	+		10595	12809	6086	6127	10234	10234					-0.03486546410226765
FDEKEKYT	8	Unmodified	_FDEKEKYT_					0	0	0			REV__nc|ENSG00000159593|Q13564-3|NAE1	REV__nc|ENSG00000159593|Q13564-3|NAE1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	530.253297	1058.49204	0.4459	0.00023644	0.31332	0.00016614	0.75922	0.00040258	530.253188568396	40.201	0.26047	40.128	39.945	40.206	-0.072838	0.021508	0.00020623	NaN	18.135	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11342000	+		10596	12809	6086	6127							-0.03486546410226765
FDFFRDWDL	9	Unmodified	_FDFFRDWDL_					0	0	0		nc|ENSG00000155966|P51816-4|AFF2;AFF2|p.K978Rfs*65|1|0.46|ENSG00000155966|chrX:148966804-148966804|A/-|frameshift_variant;AFF2|p.Q1237Pfs*15|1|0.14|ENSG00000155966|chrX:148987448-148987449|-/C|frameshift_variant;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2	nc|ENSG00000155966|P51816-4|AFF2	nc|ENSG00000155966|P51816-4|AFF2	MULTI-MSMS	HCT116MG_D190212_S4	4	1260.571044921875	1	1260.5684	1259.56112	0.48339	0.00060935	1.1362	0.0014322	1.6196	0.0020416	1260.5697670625734	46.898	0.65186	46.527	46.329	46.98	-0.37103					17	12	2	0	0	0	0.74607	1	17356	17356		2.0598	0.40713	1	3812700			10597	69	6087	6128	10235	10235					-0.05827462390652727
FDGPHGQP	8	Unmodified	_FDGPHGQP_					0	0	0		nc|ENSG00000165494|O94913|PCF11;ENSG00000165494|ENST00000690938|PCF11	nc|ENSG00000165494|O94913|PCF11	nc|ENSG00000165494|O94913|PCF11	MSMS	HCT116MG_D190212_S3	3	427.6946716308594	2	427.69321	853.371866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.883	1	17.964	17.464	18.464	0.081358								0	0	0	0.79325	1	6038	6038		23.148	7.3802	1				10598	4778	6088	6129	10236	10236					-0.06068489893334572
FDGPHGQP	8	Unmodified	_FDGPHGQP_					0	0	0		nc|ENSG00000165494|O94913|PCF11;ENSG00000165494|ENST00000690938|PCF11	nc|ENSG00000165494|O94913|PCF11	nc|ENSG00000165494|O94913|PCF11	MSMS	HCT116MG_D190212_S4	4	427.6950988769531	2	427.69321	853.371866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.929	1	17.754	17.254	18.254	-0.17501								0	0	0	0.79325	1	5983	5983		23.148	2.2772	1				10599	4778	6088	6129	10237	10237					-0.06068489893334572
FDGRKIWINKR	11	Unmodified	_FDGRKIWINKR_					0	0	0			REV__ENSG00000175376|ENST00000533544|EIF1AD	REV__ENSG00000175376|ENST00000533544|EIF1AD	MSMS	HCT116MG_D190212_S4	4	716.9129028320312	2	716.912227	1431.8099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.677	1	48.31	47.81	48.81	-0.36728								0	0	0	0.95273	1	18034	18034		4.897	1.6157	1		+		10600	13513	6089	6130	10238	10238					0.11126925636676788
FDKKKLRR	8	Unmodified	_FDKKKLRR_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MSMS	HCT116MG_D190212_S1	1	364.1904602050781	3	364.232975	1089.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.392	1	58.392	57.892	58.892	0								0	0	0	0.8837	1	22492	22492		0.45834	0	1		+		10601	12714	6090	6131	10239	10239					0.13584525970691175
FDKYVHIW	8	Unmodified	_FDKYVHIW_					0	0	0		ENSG00000092377|ENST00000383032|TBL1Y	ENSG00000092377|ENST00000383032|TBL1Y	ENSG00000092377|ENST00000383032|TBL1Y	MULTI-MSMS	HCT116MG_D190212_S1	1	554.7855834960938	2	554.284734	1106.55492	0.29715	0.00016471	-2.3081	-0.0012793	-2.0109	-0.0011146	554.7853507132347	48.438	0.6174	48.438	48.1	48.717	0					16	11	3	0	0	0	0.79062	1	18480	18480		12.532	4.6214	1	10017000			10602	1581	6091	6132	10240	10240					0.005900641684547736
FDPLFLWHRW	10	Unmodified	_FDPLFLWHRW_					0	0	0			REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|65|1|sense	REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|65|1|sense	MSMS	HCT116MG_D190212_S1	1	472.91162109375	3	472.911902	1415.71388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.715	1	13.715	13.215	14.215	0								0	0	0	0.97045	1	4462	4462		0.15932	0	1		+		10603	16880	6092	6133	10241	10241					0.02264777796585804
FDREGDCISLP	11	Unmodified	_FDREGDCISLP_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2;PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.Q1108Sfs*17|1|0.35|ENSG00000133401|chr5:32074423-32074423|C/-|frameshift_variant;PDZD2|p.V1845Rfs*6|2|0.38|ENSG00000133401|chr5:32088969-32088970|-/A|frameshift_variant;PDZD2|p.K1843Rfs*31|3|0.26|ENSG00000133401|chr5:32088970-32088970|A/-|frameshift_variant	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-MSMS	HCT116MG_D190212_S2	2	626.8159790039062	2	626.287345	1250.56014	0.45989	0.00028803	0.68345	0.00042804	1.1433	0.00071607	626.2879458199336	45.529	0.15475	45.436	45.307	45.462	-0.092472					4	2	2	0	0	0	0.71532	1	17314	17314		16.149	3.2765	1	4087400			10604	3240	6093	6134	10242	10242					-0.05512044821875861
FDTEVEPIYN	10	Unmodified	_FDTEVEPIYN_					0	0	0			REV__tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	REV__tr|U7T3K2|U7T3K2_FUSNUCelldivisionproteinFtsWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00694PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	613.781005859375	2	613.782418	1225.55028	0.44221	0.00027142	0.24052	0.00014763	0.68273	0.00041905	614.2850602374649	25.565	0.20884	25.565	25.457	25.666	0					5	3	2	0	0	0	0.82332	1	9222	9222		10.074	0	1	5463700	+		10605	17951	6094	6135	10243	10243					-0.05346909555601087
FDVAFRTGSCS	11	Unmodified	_FDVAFRTGSCS_					0	0	0			REV__ENST00000578983.1_1_17:18380198-18389672:+|nuORF	REV__ENST00000578983.1_1_17:18380198-18389672:+|nuORF	MSMS	HCT116MG_D190212_S3	3	595.2667236328125	2	595.268955	1188.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.569	1	44.262	43.762	44.762	-0.30759								0	0	0	0.94012	1	16665	16665		11.495	2.1116	1		+		10606	13366	6095	6136	10244	10244					-0.06336296647782547
FDVPIMVP	8	Unmodified	_FDVPIMVP_					0	0	0		nc|ENSG00000006459|Q6ZMT4-2|KDM7A;KDM7A|p.G917Efs*15|1|0.1|ENSG00000006459|chr7:140091172-140091172|T/-|frameshift_variant;ENSG00000006459|ENST00000397560|KDM7A	nc|ENSG00000006459|Q6ZMT4-2|KDM7A	nc|ENSG00000006459|Q6ZMT4-2|KDM7A	MSMS	HCT116MG_D190212_S4	4	459.2431335449219	2	459.243689	916.472826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.925	1	31.55	31.05	32.05	-0.37529								0	0	0	0.8837	1	11607	11607		5.7604	0	1				10607	828	6096	6137	10245	10245					0.011248257651573113
FDWREVRLK	9	Unmodified	_FDWREVRLK_					0	0	0			REV__RGS11|p.G301D|1|0.18|ENSG00000076344|chr16:271061-271061|C/T|missense_variant	REV__RGS11|p.G301D|1|0.18|ENSG00000076344|chr16:271061-271061|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	416.9007263183594	3	416.899773	1247.67749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.398	1	63.276	62.776	63.776	-0.12264								0	0	0	0.7701	1	24576	24576		0.23584	0	1		+		10608	17469	6097	6138	10246	10246					0.0635590089989364
FDYKRILTLL	10	Unmodified	_FDYKRILTLL_					0	0	0			REV__PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	REV__PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	427.92352294921875	3	427.923696	1280.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.197	1	14.277	13.777	14.777	0.079683								0	0	0	0.97045	1	4554	4554		0.15932	0	1		+		10609	12250	6098	6139	10247	10247					0.12011395533750147
FDYNKGTKDSK	11	Unmodified	_FDYNKGTKDSK_					0	0	0			REV__nc|ENSG00000135473|Q504Q3-3|PAN2	REV__nc|ENSG00000135473|Q504Q3-3|PAN2	MSMS	HCT116MG_D190212_S3	3	434.88214111328125	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.506	1	63.291	62.791	63.791	-0.21454								0	0	0	0.95954	1	24232	24232		0.45452	0.046251	1		+		10610	17136	6099	6140	10248	10248					-0.013567270243811436
FEDIKSGY	8	Unmodified	_FEDIKSGY_					0	0	0		ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;nc|ENSG00000119335|Q01105|SET;ENST00000437270.1_1_9:140535772-140535991:-|nuORF;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;ENST00000514799.1_1_5:59755891-59756539:-|nuORF	ENSG00000119335|ENST00000322030|SET;ENSG00000230667|ENST00000596516|SETSIP;ENST00000514799.1_1_5:59755891-59756539:-|nuORF	ENSG00000119335|ENST00000322030|SET	MULTI-MSMS	HCT116MG_D190212_S2	2	479.7294616699219	2	479.729458	957.444362	0.45066	0.0002162	-0.17263	-8.2815E-05	0.27803	0.00013338	479.72923702488174	31.469	0.31052	31.22	31.043	31.354	-0.24883					12	5	3	0	0	0	0.095352	1	11615	11615		96.111	47.765	1	41909000			10611	2635;6501;8524	6100	6141	10249	10249					-0.036062006104316424
FEEASFNQEG	10	Unmodified	_FEEASFNQEG_					0	0	0			REV__nc|ENSG00000123338|P55160-2|NCKAP1L	REV__nc|ENSG00000123338|P55160-2|NCKAP1L	MULTI-MSMS	HCT116MG_D190212_S4	4	579.90625	2	579.240918	1156.46728	0.28206	0.00016338	-0.14575	-8.4427E-05	0.1363	7.8953E-05	579.2408427314219	52.037	0.3605	51.691	51.519	51.879	-0.34538					10	6	2	0	0	0	0.82332	1	19408	19408		10.074	1.4806	1	8844700	+		10612	11760	6101	6142	10250	10250					-0.10469226283612443
FEEFQKNE	8	Unmodified	_FEEFQKNE_					0	0	0		nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;MYO16|p.F842Sfs*17|6|0.36|ENSG00000041515|chr13:109009038-109009038|T/-|frameshift_variant;MYO16|p.K869Nfs*6|1|0.29|ENSG00000041515|chr13:109019782-109019782|A/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;MYO16|p.A1585Rfs*18|2|0.37|ENSG00000041515|chr13:109141025-109141025|C/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16	nc|ENSG00000041515|Q9Y6X6-4|MYO16	nc|ENSG00000041515|Q9Y6X6-4|MYO16	MULTI-MSMS	HCT116MG_D190212_S2	2	535.743408203125	2	535.743096	1069.47164	0.55242	0.00029595	0.14478	7.7567E-05	0.6972	0.00037352	535.7431372970486	56.004	0.20411	55.818	55.691	55.895	-0.18565					8	3	3	0	0	0	0.64404	1	21628	21628		28.487	8.0332	1	23785000			10613	1003	6102	6143	10251	10251					-0.060317170700500355
FEEHTILT	8	Unmodified	_FEEHTILT_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	HCT116MG_D190212_S3	3	990.634033203125	1	989.493838	988.486562	0.81193	0.0008034	0.27948	0.00027654	1.0914	0.0010799	989.4938241090373	52.732	0.73178	52.425	52.038	52.77	-0.30639					29	13	3	0	0	0	0.6854	1	19963	19963		24.674	2.9272	1	9383600			10614	6467	6103	6144	10252	10252					-0.00814225202043417
FEFQWQEEERN	11	Unmodified	_FEFQWQEEERN_					0	0	0		nc|ENSG00000293246|Q8N8H1|ZNF321P	nc|ENSG00000293246|Q8N8H1|ZNF321P	nc|ENSG00000293246|Q8N8H1|ZNF321P	MSMS	HCT116MG_D190212_S3	3	771.3367919921875	2	771.336412	1540.65827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.064	1	54.772	54.272	55.272	-0.2918								0	0	0	0.95581	1	20879	20879		3.2813	0	1				10615	9682	6104	6145	10253	10253					-0.09043144972315531
FEFRWLRKPPL	11	Unmodified	_FEFRWLRKPPL_					0	0	0			REV__ENST00000261783.3_1_14:68086627-68108954:+|nuORF	REV__ENST00000261783.3_1_14:68086627-68108954:+|nuORF	MSMS	HCT116MG_D190212_S3	3	496.95416259765625	3	496.95399	1487.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.386	1	44.078	43.578	44.578	-0.30759								0	0	0	0.96111	1	16591	16591		0.50596	0.051438	1		+		10616	14629	6105	6146	10254	10254					0.11573284301857711
FEFRWLRKPPL	11	Unmodified	_FEFRWLRKPPL_					0	0	0			REV__ENST00000261783.3_1_14:68086627-68108954:+|nuORF	REV__ENST00000261783.3_1_14:68086627-68108954:+|nuORF	MSMS	HCT116MG_D190212_S3	3	496.9540710449219	3	496.95399	1487.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.969	1	44.659	44.159	45.159	-0.30927								0	0	0	0.96111	1	16823	16823		0.50596	0	1		+		10617	14629	6105	6146	10255	10255					0.11573284301857711
FEFRWLRKPPL	11	Unmodified	_FEFRWLRKPPL_					0	0	0			REV__ENST00000261783.3_1_14:68086627-68108954:+|nuORF	REV__ENST00000261783.3_1_14:68086627-68108954:+|nuORF	MSMS	HCT116MG_D190212_S3	3	497.0306091308594	3	496.95399	1487.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.927	1	52.621	52.121	53.121	-0.30639								0	0	0	0.95954	1	20020	20020		1.3296	0.11481	1		+		10618	14629	6105	6146	10256	10256					0.11573284301857711
FEFSQSPHIW	10	Unmodified	_FEFSQSPHIW_					0	0	0		ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	MSMS	HCT116MG_D190212_S3	3	639.335205078125	2	639.301113	1276.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.268	1	46.953	46.453	47.453	-0.31525								0	0	0	0.95507	1	17746	17746		3.5965	0.60125	1				10619	8258	6106	6147	10257	10257					-0.03955773499319548
FEFYCMACDY	10	Unmodified	_FEFYCMACDY_					0	0	0		nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	MULTI-MSMS	HCT116MG_D190212_S1	1	646.2274169921875	2	646.227053	1290.43955	0.70957	0.00045854	-0.2322	-0.00015005	0.47737	0.00030849	646.2270891200042	16.65	0.31224	16.65	16.473	16.785	0					11	5	3	0	0	0	0.71349	1	5611	5611		19.257	8.4331	1	4023900			10620	6450	6107	6148	10258	10258					-0.19404912131358287
FEFYCMACDY	10	Unmodified	_FEFYCMACDY_					0	0	0		nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	MULTI-MSMS	HCT116MG_D190212_S1	1	431.15362548828125	3	431.153794	1290.43955	0.027193	1.1724E-05	-0.35446	-0.00015283	-0.32726	-0.0001411	431.15360922789375	16.618	0.36432	16.618	16.473	16.837	0					10	6	3	0	0	0	0.87945	1	5627	5627		3.5871	0.5148	1	3144900			10621	6450	6107	6148	10259	10259					-0.19404912131358287
FEFYCMACDY	10	Unmodified	_FEFYCMACDY_					0	0	0		nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	MULTI-MSMS	HCT116MG_D190212_S2	2	431.15350341796875	3	431.153794	1290.43955	0.051522	2.2214E-05	-0.29348	-0.00012653	-0.24195	-0.00010432	431.1537156341852	17.196	0.36497	16.847	16.613	16.978	-0.34933					10	6	2	0	0	0	0.87801	1	5852	5852		1.9064	0	1	5994600			10622	6450	6107	6148	10260	10260					-0.19404912131358287
FEILNHSL	8	Unmodified	_FEILNHSL_					0	0	0		nc|ENSG00000174628|Q8N0W5-3|IQCK;ENST00000564515.5_1_16:19729628-19746934:+|nuORF	nc|ENSG00000174628|Q8N0W5-3|IQCK	nc|ENSG00000174628|Q8N0W5-3|IQCK	MULTI-MSMS	HCT116MG_D190212_S1	1	486.77740478515625	2	486.761092	971.507631	0.10459	5.091E-05	-0.22661	-0.00011031	-0.12202	-5.9395E-05	486.76093764375634	32.352	0.36451	32.352	32.17	32.534	0					9	6	2	0	0	0	0.79062	1	11867	11867		12.532	0	1	18547000			10623	8846	6108	6149	10261	10261					0.02073784897470432
FEIRQFCPPF	10	Unmodified	_FEIRQFCPPF_					0	0	0			REV__ENST00000485277.1_1_1:161133669-161135234:+|nuORF	REV__ENST00000485277.1_1_1:161133669-161135234:+|nuORF	MSMS	HCT116MG_D190212_S3	3	642.3135986328125	2	642.315709	1282.61686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.541	1	56.258	55.758	56.758	-0.28367								0	0	0	0.90023	1	21467	21467		15.847	5.0233	1		+		10624	15980	6109	6150	10262	10262					-0.01313952474697544
FEKDFKEVF	9	Unmodified	_FEKDFKEVF_					0	0	0		ENST00000483728.5_1_2:231265972-231267608:+|nuORF;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	ENST00000483728.5_1_2:231265972-231267608:+|nuORF	ENST00000483728.5_1_2:231265972-231267608:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	594.8013305664062	2	594.800414	1187.58628	0.72089	0.00042879	-0.0079585	-4.7337E-06	0.71293	0.00042405	594.8003482992177	41.85	0.25963	41.782	41.705	41.964	-0.068199					5	4	2	0	0	0	0.070431	2	15860	15835;15860		68.76	36.89	1	12761000			10625	5827	6110	6151	10263;10264	10264					-1.4075880926611717E-05
FEKHLNREYKL	11	Unmodified	_FEKHLNREYKL_					0	0	0			REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	492.9369201660156	3	492.936776	1475.7885	0.2964	0.00014611	0.0066417	3.2739E-06	0.30304	0.00014938	492.93670294739474	23.159	0.88635	23.159	22.845	23.732	0					46	16	4	0	0	0	0.72755	1	8173	8173		11.631	1.1039	1	15356000	+		10626	14935	6111	6152	10265	10265					0.06963495817308285
FEKHLNREYKL	11	Unmodified	_FEKHLNREYKL_					0	0	0			REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	493.2106018066406	3	492.936776	1475.7885	0.2964	0.00014611	0.0066417	3.2739E-06	0.30304	0.00014938	492.93670294739474	23.159	0.88635	23.159	22.845	23.732	0					46	16	4	0	0	0	0.36374	1	8209	8209		11.631	1.6151	1	15356000	+		10627	14935	6111	6152	10266	10266					0.06963495817308285
FEKHLNREYKL	11	Unmodified	_FEKHLNREYKL_					0	0	0			REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	492.9368896484375	3	492.936776	1475.7885	0.40913	0.00020167	-0.38028	-0.00018746	0.028843	1.4218E-05	492.93657463082945	23.917	0.51992	23.534	23.195	23.715	-0.38324					17	9	2	0	0	0	0.72755	1	8579	8579		11.631	1.6151	1	9988900	+		10628	14935	6111	6152	10267	10267					0.06963495817308285
FEKHLNREYKL	11	Unmodified	_FEKHLNREYKL_					0	0	0			REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	REV__ENST00000332070.7_1_X:133527609-133547529:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	493.2112731933594	3	492.936776	1475.7885	0.40913	0.00020167	-0.38028	-0.00018746	0.028843	1.4218E-05	492.93657463082945	23.917	0.51992	23.534	23.195	23.715	-0.38324					17	9	2	0	0	0	0.36579	1	8429	8429		3.8459	0.25323	1	9988900	+		10629	14935	6111	6152	10268	10268					0.06963495817308285
FEKKKLRKPRP	11	Unmodified	_FEKKKLRKPRP_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MSMS	HCT116MG_D190212_S4	4	476.3065185546875	3	476.305022	1425.89324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.587	1	40.208	39.708	40.708	-0.37828								0	0	0	0.95581	1	14896	14896		1.3296	0.21989	1		+		10630	13766	6112	6153	10269	10269					0.19732662084538788
FEKKVRVIY	9	Unmodified	_FEKKVRVIY_					0	0	0		ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MSMS	HCT116MG_D190212_S4	4	591.358642578125	2	591.355691	1180.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.317	1	53.994	53.494	54.494	-0.32349								0	0	0	0.7689	1	20306	20306		4.756	0	1				10631	1928	6113	6154	10270	10270					0.11370857190809147
FEKRKITLIAL	11	Unmodified	_FEKRKITLIAL_					0	0	0			REV__ENST00000394783.7_1_3:52729545-52729969:-|nuORF	REV__ENST00000394783.7_1_3:52729545-52729969:-|nuORF	MSMS	HCT116MG_D190212_S3	3	666.4259643554688	2	666.424105	1330.83366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.003	1	42.699	42.199	43.199	-0.30472								0	0	0	0.95954	1	16037	16037		1.3295	0	1		+		10632	15344	6114	6155	10271	10271					0.18147346350542648
FELHVEGF	8	Unmodified	_FELHVEGF_					0	0	0			REV__KIAA0146-ANK1|4|fusion;REV__nc|ENSG00000164808|Q14159-2|SPIDR	REV__KIAA0146-ANK1|4|fusion	MULTI-SECPEP	HCT116MG_D190212_S3	3	489.2337951660156	2	489.239993	976.465432	0.078263	3.8289E-05	0.28696	0.00014039	0.36522	0.00017868	489.2399972653899	50.855	0.36488	50.541	50.333	50.698	-0.31381					11	6	3	0	0	0	0.31855	1	19124	19124		8.5933	0	1	4667400	+		10633	16925;13024	6115	6156	10272	10272					-0.023741905108977335
FELSALEDYP	10	Unmodified	_FELSALEDYP_					0	0	0		ENST00000440377.2_1_1:146646085-146646127:+|nuORF	ENST00000440377.2_1_1:146646085-146646127:+|nuORF	ENST00000440377.2_1_1:146646085-146646127:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	592.154052734375	2	592.279512	1182.54447	0.82456	0.00048837	-0.10063	-5.9598E-05	0.72394	0.00042877	592.2792921222475	44.83	0.4678	44.521	44.265	44.732	-0.30927					27	12	3	0	0	0	0.87801	1	16669	16669		3.9444	0	1	18706000			10634	7916	6116	6157	10273	10273					-0.0395000806729513
FEMYVFWDVLY	11	Unmodified	_FEMYVFWDVLY_					0	0	0		ENST00000435041.2_1_6:90038552-90038597:-|nuORF	ENST00000435041.2_1_6:90038552-90038597:-|nuORF	ENST00000435041.2_1_6:90038552-90038597:-|nuORF	MSMS	HCT116MG_D190212_S4	4	756.3477172851562	2	756.349414	1510.68428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.183	1	52.848	52.348	53.348	-0.33473								0	0	0	0.94238	1	19849	19849		13.042	7.7456	1				10635	7878	6117	6158	10274	10274					-0.050639670543887405
FENFPGLWQNM	11	Unmodified	_FENFPGLWQNM_					0	0	0		PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant;ENSG00000154864|ENST00000674853|PIEZO2	PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant	PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	691.814697265625	2	691.81353	1381.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.941	1	40.639	40.139	41.139	-0.30185								0	0	0	0.9465	1	15215	15215		8.1555	1.0538	1				10636	4234	6118	6159	10275	10275					-0.06303461688253265
FENVWLRP	8	Unmodified	_FENVWLRP_					0	0	0		ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	MSMS	HCT116MG_D190212_S4	4	353.7324523925781	3	354.190665	1059.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.822	1	38.44	37.94	38.94	-0.38163								0	0	0	0.8837	1	14242	14242		1.8442	0	1				10637	5047	6119	6160	10276	10276					0.022771800257032737
FEQDAEKMFDW	11	Unmodified	_FEQDAEKMFDW_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;KALRN|p.D854Tfs*33|1|0.3|ENSG00000160145|chr3:124422830-124422830|A/-|frameshift_variant;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;ENST00000504606.1_1_5:14291106-14297405:+|nuORF;nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;nc|ENSG00000160145|O60229-2|KALRN	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	723.3080444335938	2	723.305735	1444.59692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.825	1	10.551	10.051	11.051	-0.27365								0	0	0	0.95954	1	3450	3450		1.3295	1.0225	1				10638	994;4433	6120	6161	10277	10277					-0.10759792995986572
FEQEMATAA	9	Unmodified	_FEQEMATAA_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S2	2	997.4310913085938	1	997.429523	996.422247	0.34433	0.00034345	-0.32906	-0.00032821	0.015275	1.5235E-05	997.4301333700404	30.616	0.20555	30.339	30.241	30.446	-0.27704					5	3	2	0	0	0	0.10244	1	11289	11289		57.722	15.627	1	12836000			10639	1322	6121	6162	10278	10278					-0.07610748350509766
FERIFYYFHKY	11	Unmodified	_FERIFYYFHKY_					0	0	0			REV__ENSG00000142961|ENST00000319928|MOB3C	REV__ENSG00000142961|ENST00000319928|MOB3C	MSMS	HCT116MG_D190212_S3	3	806.89794921875	2	806.900994	1611.78744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.828	1	53.528	53.028	54.028	-0.29946								0	0	0	0.94538	1	20382	20382		8.7454	3.0136	1		+		10640	12370	6122	6163	10279	10279					0.006012814484165574
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	525.3092651367188	3	525.309718	1572.90732	0.45254	0.00023772	0.15298	8.0364E-05	0.60552	0.00031809	525.3097634668337	54.862	1.5285	54.862	54.231	55.76	0					107	29	5	0	0	0	0.74191	2	20921	20921;21159		0.40827	0.31342	1	372590000			10641	315	6123	6164	10280;10281	10280					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	787.9635009765625	2	787.460939	1572.90732	0.93611	0.00073715	-0.22927	-0.00018054	0.70684	0.00055661	787.4607592503082	54.887	1.4264	54.887	54.231	55.658	0					110	27	6	0	0	0	0.74191	1	20992	20992		0	0	1	175990000			10642	315	6123	6164	10282	10282					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	787.46142578125	2	787.460939	1572.90732	0.94807	0.00074657	-0.72316	-0.00056946	0.22491	0.0001771	787.4603149313391	54.058	0.35727	54.058	53.822	54.179	0					13	6	3	0	0	0	0.36628	1	20750	20750		0.30703	0	1	21381000			10643	315	6123	6164	10283	10283					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	525.3097534179688	3	525.309718	1572.90732	0.51619	0.00027116	0.025843	1.3576E-05	0.54203	0.00028474	525.309336481046	55.586	0.57291	55.274	54.881	55.454	-0.312					20	10	3	0	0	0	0.74191	1	20803	20803		0.094841	0.011491	1	6109500			10644	315	6123	6164	10284	10284					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	787.460939	1572.90732	0.91303	0.00071897	0.62123	0.00048919	1.5343	0.0012082	787.9628537093918	54.895	0.30794	54.707	54.457	54.765	-0.18797	-0.090295	0.0012848	NaN	0	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8751800			10645	315	6123	6164							0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		3	525.309718	1572.90732	0.49394	0.00025947	-1.2534	-0.00065841	-0.75943	-0.00039894	525.6439703898698	54.959	0.36495	54.642	54.458	54.823	-0.31774	-0.11029	-0.0021962	NaN	0.40827	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3757600			10646	315	6123	6164							0.1437870756551547
FESGDFVSF	9	Unmodified	_FESGDFVSF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	HCT116MG_D190212_S2	2	1034.4473876953125	1	1034.44655	1033.43928	0.53845	0.00055699	0.16788	0.00017366	0.70633	0.00073066	1034.446816023664	55.334	0.20336	55.146	55.019	55.222	-0.18797					8	3	3	0	0	0	0.24973	1	21352	21352		36.044	5.4077	1	53950000			10647	3117	6124	6165	10285	10285					-0.07610504473041146
FESGDFVSF	9	Unmodified	_FESGDFVSF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	HCT116MG_D190212_S3	3	1034.4483642578125	1	1034.44655	1033.43928	0.58163	0.00060166	0.4583	0.00047409	1.0399	0.0010758	1034.4471476780589	55.454	0.21217	55.162	55.031	55.243	-0.2918					5	3	2	0	0	0	0.41514	1	21051	21051		21.747	6.9084	1	3323800			10648	3117	6124	6165	10286	10286					-0.07610504473041146
FESHITSY	8	Unmodified	_FESHITSY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S1	1	492.227294921875	2	492.227082	982.439611	0.17371	8.5503E-05	0.2039	0.00010037	0.37761	0.00018587	492.2270636718197	32.092	0.26045	32.092	31.961	32.222	0					7	4	2	0	0	0	0.055277	1	11854	11854		117.6	23.715	1	10999000			10649	5757	6125	6166	10287	10287					-0.05231084753199866
FESHITSY	8	Unmodified	_FESHITSY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2273254394531	2	492.227082	982.439611	0.17918	8.8196E-05	0.55404	0.00027272	0.73322	0.00036091	492.2271805000165	32.406	0.46828	32.176	31.995	32.463	-0.23009					12	8	2	0	0	0	0.067369	1	11994	11994		104.8	15.372	1	30188000			10650	5757	6125	6166	10288	10288					-0.05231084753199866
FESHITSY	8	Unmodified	_FESHITSY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S3	3	492.7300720214844	2	492.227082	982.439611	0.19845	9.7683E-05	0.43745	0.00021532	0.6359	0.00031301	492.22684747914866	32.49	0.20847	32.212	32.098	32.306	-0.27841					6	3	2	0	0	0	0.12463	1	11934	11934		89.427	18.711	1	4110400			10651	5757	6125	6166	10289	10289					-0.05231084753199866
FESTSFFL	8	Unmodified	_FESTSFFL_					0	0	0		ENST00000577760.1_1_17:37009946-37010009:-|nuORF	ENST00000577760.1_1_17:37009946-37010009:-|nuORF	ENST00000577760.1_1_17:37009946-37010009:-|nuORF	MSMS	HCT116MG_D190212_S2	2	489.2338562011719	2	489.234376	976.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.469	1	50.297	49.797	50.797	-0.1719								0	0	0	0.77419	1	19342	19342		24.674	5.2349	1				10652	8936	6126	6167	10290	10290					-0.03497012605043892
FESYGCYC	8	Unmodified	_FESYGCYC_					0	0	0		ENSG00000253117|ENST00000254627|OC90;nc|ENSG00000253117|Q02509-3|OC90	ENSG00000253117|ENST00000254627|OC90	ENSG00000253117|ENST00000254627|OC90	MULTI-MSMS	HCT116MG_D190212_S2	2	486.1675720214844	2	486.167321	970.32009	0.06811	3.3113E-05	0.41757	0.00020301	0.48568	0.00023612	486.1675536927701	39.992	0.31142	39.919	39.79	40.102	-0.072838					6	5	2	0	0	0	0.77285	1	15101	15101		14.582	4.3983	1	8712700			10653	6583	6127	6168	10291	10291					-0.16625737693766496
FESYGCYC	8	Unmodified	_FESYGCYC_					0	0	0		ENSG00000253117|ENST00000254627|OC90;nc|ENSG00000253117|Q02509-3|OC90	ENSG00000253117|ENST00000254627|OC90	ENSG00000253117|ENST00000254627|OC90	MULTI-MATCH	HCT116MG_D190212_S3	3		2	486.167321	970.32009	0.031216	1.5176E-05	0.29971	0.00014571	0.33092	0.00016088	486.16746965281567	40.283	0.20849	39.981	39.799	40.007	-0.30161	0.030996	-8.2711E-05	NaN	14.582	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4260300			10654	6583	6127	6168							-0.16625737693766496
FETYSDWDR	9	Unmodified	_FETYSDWDR_					0	0	0		nc|ENSG00000166912|Q9NXD2-2|MTMR10;MTMR10|p.S561*|1|0.05|ENSG00000166912|chr15:30942941-30942942|-/AT|frameshift_variant;MTMR10|p.F552Sfs*19|1|0.26|ENSG00000166912|chr15:30942966-30942966|A/-|frameshift_variant;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;MTMR10|p.L761*|1|0.4|ENSG00000166912|chr15:30941522-30941522|A/-|frameshift_variant;ENSG00000166912|ENST00000435680|MTMR10	nc|ENSG00000166912|Q9NXD2-2|MTMR10	nc|ENSG00000166912|Q9NXD2-2|MTMR10	MULTI-MSMS	HCT116MG_D190212_S2	2	609.3801879882812	2	609.756735	1217.49892	0.73855	0.00045034	-0.35763	-0.00021807	0.38092	0.00023227	609.7565251525679	40.717	0.46503	40.647	40.468	40.933	-0.069626					20	8	4	0	0	0	0.71345	1	15293	15293		4.3292	1.594	1	190390000			10655	4890	6128	6169	10292	10292					-0.10113233529659738
FEWENKVTV	9	Unmodified	_FEWENKVTV_					0	0	0		ENST00000526527.1_1_11:14481741-14482839:-|nuORF;ENSG00000129083|ENST00000439561|COPB1	ENST00000526527.1_1_11:14481741-14482839:-|nuORF	ENST00000526527.1_1_11:14481741-14482839:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	576.2907104492188	2	576.290214	1150.56587	0.38753	0.00022333	0.20213	0.00011649	0.58966	0.00033982	576.2904233600779	45.99	0.3074	45.889	45.761	46.068	-0.1014					8	5	2	0	0	0	0.0060369	1	17530	17530		128.57	57.439	1	33367000			10656	3020	6129	6170	10293	10293					-0.0033857824791994062
FEWLSQMRFYF	11	Unmodified	_FEWLSQMRFYF_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	518.5814208984375	3	518.579712	1552.71731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.622	1	13.46	12.96	13.96	-0.16233								0	0	0	0.96149	1	4281	4281		0.08335	0	1				10657	741	6130	6171	10294	10294					-0.03694340211723102
FEYIRSETY	9	Unmodified	_FEYIRSETY_					0	0	0		nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1	nc|ENSG00000148484|Q15404-2|RSU1	nc|ENSG00000148484|Q15404-2|RSU1	MSMS	HCT116MG_D190212_S2	2	604.3493041992188	2	604.285128	1206.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.697	1	37.594	37.094	38.094	-0.10318								0	0	0	0.768	1	14139	14139		7.9102	0.62092	1				10658	4026	6131	6172	10295	10295					-0.039311859731242293
FFEKDFGDMH	10	Unmodified	_FFEKDFGDMH_					0	0	0		ENSG00000173334|ENST00000311922|TRIB1	ENSG00000173334|ENST00000311922|TRIB1	ENSG00000173334|ENST00000311922|TRIB1	MSMS	HCT116MG_D190212_S3	3	636.7724609375	2	636.771331	1271.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.806	1	10.846	10.346	11.346	0.039975								0	0	0	0.96937	1	3289	3289		0.40072	0	1				10659	5284	6132	6173	10296	10296					-0.09679412505010987
FFEWLKLKP	9	Unmodified	_FFEWLKLKP_					0	0	0			REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	403.23260498046875	3	403.233982	1206.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1823	1	9.1823	8.6823	9.6823	0								0	0	0	0.77018	1	2780	2780		0.26902	0.033176	1		+		10660	9885	6133	6174	10297	10297					0.08504356304842986
FFFERHWRKWS	11	Unmodified	_FFFERHWRKWS_					0	0	0		ENST00000543086.7_1_12:1192471-1192564:+|nuORF	ENST00000543086.7_1_12:1192471-1192564:+|nuORF	ENST00000543086.7_1_12:1192471-1192564:+|nuORF	MSMS	HCT116MG_D190212_S4	4	813.4102172851562	2	813.409852	1624.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.106	1	22.868	22.368	23.368	-0.23758								0	0	0	0.96208	1	8073	8073		0	0	1				10661	8701	6134	6175	10298	10298					0.017740414939225957
FFFFFFFFAWR	11	Unmodified	_FFFFFFFFAWR_					0	0	0		ENST00000375650.4_1_6:31797896-31797989:+|nuORF	ENST00000375650.4_1_6:31797896-31797989:+|nuORF	ENST00000375650.4_1_6:31797896-31797989:+|nuORF	MSMS	HCT116MG_D190212_S1	1	536.9324951171875	3	536.932414	1607.77541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0422	1	9.0422	8.5422	9.5422	0								0	0	0	0.96208	1	2737	2737		0	0	1				10662	7510	6135	6176	10299	10299					-0.004162905041084741
FFFLFPRRRRR	11	Unmodified	_FFFLFPRRRRR_					0	0	0		ENST00000222747.7_1_7:120497939-120498116:-|nuORF	ENST00000222747.7_1_7:120497939-120498116:-|nuORF	ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MSMS	HCT116MG_D190212_S4	4	799.4718017578125	2	799.470578	1596.9266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.794	1	49.432	48.932	49.932	-0.36213								0	0	0	0.9619	1	18481	18481		0.35063	0.35063	1				10663	6758	6136	6177	10300	10300					0.15201708647077794
FFFVSLLKK	9	Unmodified	_FFFVSLLKK_					0	0	0			REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	REV__tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	376.89874267578125	3	376.898711	1127.6743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5717	1	4.5717	4.0717	5.0717	0								0	0	0	0.76995	1	1370	1370		1.0715	0	1		+		10664	17739	6137	6178	10301	10301					0.11557257793197095
FFGKLVKI	8	Unmodified	_FFGKLVKI_					0	0	0		tr|U7SN81|U7SN81_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01851PE=4SV=1;tr|U7T5C5|U7T5C5_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00520PE=4SV=1	tr|U7SN81|U7SN81_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01851PE=4SV=1	tr|U7SN81|U7SN81_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01851PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	476.30706787109375	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.954	1	46.832	46.332	47.332	-0.12175								0	0	0	0.8837	1	17899	17899		2.3027	0.24298	1				10665	18357	6138	6179	10302	10302					0.11805030558900853
FFGLIFVYN	9	Unmodified	_FFGLIFVYN_					0	0	0			REV__ENST00000222584.7_1_7:21550936-21551044:+|nuORF	REV__ENST00000222584.7_1_7:21550936-21551044:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	560.3243408203125	2	560.29731	1118.58007	0.47698	0.00026725	-1.8602	-0.0010423	-1.3833	-0.00077504	560.2960052292185	57.204	0.15636	57.025	56.947	57.103	-0.17904					4	2	2	0	0	0	0.23177	1	22084	22084		20.871	2.7249	1	7300900	+		10666	14527	6139	6180	10303	10303					0.02552118971038908
FFHHIVNSDY	10	Unmodified	_FFHHIVNSDY_					0	0	0			REV__ENSG00000181767|ENST00000313503|OR8H2	REV__ENSG00000181767|ENST00000313503|OR8H2	MSMS	HCT116MG_D190212_S1	1	639.8012084960938	2	639.798737	1277.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.668	1	33.668	33.168	34.168	0								0	0	0	0.45592	1	12468	12468		49.933	2.1843	1		+		10667	13696	6140	6181	10304	10304					-0.04476657642089776
FFIRWLRQEKE	11	Unmodified	_FFIRWLRQEKE_					0	0	0		TGIF1|p.D151Gfs*35|1|0.2|ENSG00000177426|chr18:3456399-3456400|-/G|frameshift_variant	TGIF1|p.D151Gfs*35|1|0.2|ENSG00000177426|chr18:3456399-3456400|-/G|frameshift_variant	TGIF1|p.D151Gfs*35|1|0.2|ENSG00000177426|chr18:3456399-3456400|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	517.9502563476562	3	517.952537	1550.83578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.745	1	50.432	49.932	50.932	-0.31381								0	0	0	0.96141	1	19143	19143		0.094841	0	1				10668	18267	6141	6182	10305	10305					0.08239775088259194
FFKEVDECS	9	Unmodified	_FFKEVDECS_					0	0	0		BMP1|p.N614Tfs*138|1|0.42|ENSG00000168487|chr8:22196747-22196747|C/-|frameshift_variant;nc|ENSG00000168487|P13497-4|BMP1;BMP1|p.N614Qfs*21|1|0.3|ENSG00000168487|chr8:22196746-22196747|-/C|frameshift_variant;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;BMP1|p.V817Sfs*52|1|0.34|ENSG00000168487|chr8:22207385-22207385|C/-|frameshift_variant;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;TLL2|p.G891Afs*3|1|0.44|ENSG00000095587|chr10:96370306-96370306|C/-|frameshift_variant;ENSG00000095587|ENST00000357947|TLL2;ENSG00000168487|ENST00000306385|BMP1;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENST00000354870.5_1_8:22035226-22069238:+|nuORF	BMP1|p.N614Tfs*138|1|0.42|ENSG00000168487|chr8:22196747-22196747|C/-|frameshift_variant;ENSG00000168487|ENST00000306385|BMP1	ENSG00000168487|ENST00000306385|BMP1	MULTI-MSMS	HCT116MG_D190212_S3	3	552.2389526367188	2	552.239332	1102.46411	0.26109	0.00014418	-0.079901	-4.4125E-05	0.18119	0.00010006	552.7414935425994	40.001	0.2743	39.7	39.629	39.903	-0.30137					10	6	2	0	0	0	0.56733	1	14840	14840		13.042	2.2185	1	5042300			10669	269;5014	6142	6183	10306	10306					-0.08302192661972185
FFKLLIKV	8	Unmodified	_FFKLLIKV_					0	0	0		ASB11|p.L32Wfs*4|1|0.54|ENSG00000165192|chrX:15315511-15315511|A/-|frameshift_variant;nc|ENSG00000165192|Q8WXH4-2|ASB11;ENSG00000165192|ENST00000480796|ASB11	ASB11|p.L32Wfs*4|1|0.54|ENSG00000165192|chrX:15315511-15315511|A/-|frameshift_variant	ASB11|p.L32Wfs*4|1|0.54|ENSG00000165192|chrX:15315511-15315511|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	504.3376770019531	2	504.336239	1006.65792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.858	1	46.858	46.358	47.358	0								0	0	0	0.8837	1	17789	17789		0.79363	0	1				10670	197	6143	6184	10307	10307					0.15486176627098303
FFLAHLSFL	9	Unmodified	_FFLAHLSFL_					0	0	0		OR2W3|p.L284Sfs*14|2|0.22|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant;ENSG00000238243|ENST00000360358|OR2W3	OR2W3|p.L284Sfs*14|2|0.22|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	OR2W3|p.L284Sfs*14|2|0.22|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	548.1652221679688	2	547.805303	1093.59605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.445	1	49.291	48.791	49.791	-0.15405								0	0	0	0.76781	1	18924	18924		8.5933	1.304	1				10671	6532	6144	6185	10308	10308					0.052998252079532904
FFLWASDDK	9	Unmodified	_FFLWASDDK_					0	0	0			REV__nc|ENSG00000083799|Q9NQC7-2|CYLD	REV__nc|ENSG00000083799|Q9NQC7-2|CYLD	MSMS	HCT116MG_D190212_S3	3	564.7696533203125	2	564.771657	1127.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.954	1	25.826	25.326	26.326	-0.12795								0	0	0	0.74436	1	9290	9290		16.942	0	1		+		10672	10907	6145	6186	10309	10309					-0.02990249793674593
FFPERRYFYWY	11	Unmodified	_FFPERRYFYWY_					0	0	0		nc|ENSG00000078549|P41586-5|ADCYAP1R1;nc|ENSG00000078549|P41586-3|ADCYAP1R1;ENSG00000078549|ENST00000304166|ADCYAP1R1;nc|ENSG00000078549|P41586-4|ADCYAP1R1;nc|ENSG00000078549|P41586-2|ADCYAP1R1	nc|ENSG00000078549|P41586-5|ADCYAP1R1	nc|ENSG00000078549|P41586-5|ADCYAP1R1	MSMS	HCT116MG_D190212_S2	2	837.3981323242188	2	837.398618	1672.78268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.365	1	47.243	46.743	47.743	-0.12175								0	0	0	0.96157	1	18066	18066		0.26902	0.26902	1				10673	1367	6146	6187	10310	10310					-0.026796026943202378
FFQRRMRSRWQ	11	Unmodified	_FFQRRMRSRWQ_					0	0	0			REV__ENST00000382214.7_1_20:388725-389346:+|nuORF	REV__ENST00000382214.7_1_20:388725-389346:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	533.2813720703125	3	533.280882	1596.82082	0.32309	0.0001723	0.86039	0.00045883	1.1835	0.00063113	533.6158259603891	16.499	0.20825	16.499	16.369	16.577	0					8	3	3	0	0	0	0.74191	1	5570	5570		1.0136	0.60531	1	5263500	+		10674	15290	6147	6188	10311	10311					0.046280047393338464
FFRDQPWHWRP	11	Unmodified	_FFRDQPWHWRP_					0	0	0		ENST00000372899.5_1_6:42643825-42644554:+|nuORF	ENST00000372899.5_1_6:42643825-42644554:+|nuORF	ENST00000372899.5_1_6:42643825-42644554:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	524.9282836914062	3	524.593343	1570.7582	0.30253	0.0001587	0.97053	0.00050913	1.2731	0.00066784	524.5937293577441	22.589	0.36365	22.352	22.133	22.497	-0.23758					13	6	3	0	0	0	0.74191	1	7879	7879		1.3296	0.11481	1	4490300			10675	7468	6148	6189	10312	10312					-0.00434818057215125
FFRDQPWHWRP	11	Unmodified	_FFRDQPWHWRP_					0	0	0		ENST00000372899.5_1_6:42643825-42644554:+|nuORF	ENST00000372899.5_1_6:42643825-42644554:+|nuORF	ENST00000372899.5_1_6:42643825-42644554:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	524.593343	1570.7582	0.30253	0.0001587	0.97053	0.00050913	1.2731	0.00066784	524.5937293577441	22.589	0.36365	22.352	22.133	22.497	-0.23758	-0.016111	-0.00033251	NaN	1.3296	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4490300			10676	7468	6148	6189							-0.00434818057215125
FFRKKYRI	8	Unmodified	_FFRKKYRI_					0	0	0		nc|ENSG00000113389|P17342-3|NPR3;nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3	nc|ENSG00000113389|P17342-3|NPR3	nc|ENSG00000113389|P17342-3|NPR3	MSMS	HCT116MG_D190212_S4	4	579.35205078125	2	579.350743	1156.68693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.516	1	46.145	45.645	46.645	-0.37134								0	0	0	0.8837	1	17176	17176		0.69038	0	1				10677	2384	6149	6190	10313	10313					0.11485713976094303
FFRLRRRRQIM	11	Unmodified	_FFRLRRRRQIM_					0	0	0		ENST00000292524.5_1_8:145748060-145748543:+|nuORF	ENST00000292524.5_1_8:145748060-145748543:+|nuORF	ENST00000292524.5_1_8:145748060-145748543:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.86962890625	3	526.980656	1577.92014	0.28344	0.00014937	-0.06655	-3.5071E-05	0.21689	0.0001143	527.3149438280735	15.003	0.93743	14.677	14.03	14.968	-0.32627					21	17	2	0	0	0	0.3662	1	4859	4859		0.40827	0.40827	1	3376900			10678	6962	6150	6191	10314	10314					0.1542944742407144
FFTYINNL	8	Unmodified	_FFTYINNL_					0	0	0		tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	tr|U7T352|U7T352_FUSNUWYLdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00398PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	516.3014526367188	2	516.263468	1030.51238	0.23886	0.00012331	-0.69671	-0.00035969	-0.45786	-0.00023637	516.2629380810276	36.601	0.31295	36.601	36.47	36.783	0					7	5	2	0	0	0	0.3238	1	13670	13670		10.183	0	1	11048000			10679	18588	6151	6192	10315	10315					-0.0016533095977138146
FFVFVFFNKPK	11	Unmodified	_FFVFVFFNKPK_					0	0	0			REV__ENST00000561903.6_1_16:1830271-1830817:+|nuORF	REV__ENST00000561903.6_1_16:1830271-1830817:+|nuORF	MSMS	HCT116MG_D190212_S4	4	710.3927612304688	2	710.394816	1418.77508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.062	1	57.774	57.274	58.274	-0.28879								0	0	0	0.95636	1	21811	21811		2.9952	0.26005	1		+		10680	16497	6152	6193	10316	10316					0.082442897760302
FFVLKLPKG	9	Unmodified	_FFVLKLPKG_					0	0	0		ENST00000438828.3_3_2:203777481-203777724:+|nuORF	ENST00000438828.3_3_2:203777481-203777724:+|nuORF	ENST00000438828.3_3_2:203777481-203777724:+|nuORF	MSMS	HCT116MG_D190212_S1	1	525.3075561523438	2	524.83132	1047.64809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.001	1	58.001	57.501	58.501	0								0	0	0	0.76877	1	22331	22331		5.2307	0	1				10681	7903	6153	6194	10317	10317					0.12616988621721248
FFVPFLFTY	9	Unmodified	_FFVPFLFTY_					0	0	0		tr|U7SKK9|U7SKK9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02023PE=4SV=1	tr|U7SKK9|U7SKK9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02023PE=4SV=1	tr|U7SKK9|U7SKK9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02023PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	394.20697021484375	3	394.207433	1179.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.131	1	56.952	56.452	57.452	-0.17904								0	0	0	0.7694	1	22054	22054		2.9952	0	1				10682	18327	6154	6195	10318	10318					0.017852896308568234
FFYYHQYYHQY	11	Unmodified	_FFYYHQYYHQY_					0	0	0			REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF	REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF	MSMS	HCT116MG_D190212_S3	3	553.5755004882812	3	553.573614	1657.69901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.687	1	39.386	38.886	39.886	-0.30137								0	0	0	0.96111	1	14736	14736		0.50596	0.41111	1		+		10683	16175	6155	6196	10319	10319					-0.103527588620409
FGAKSPKA	8	Unmodified	_FGAKSPKA_					0	0	0		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	403.2325134277344	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.954	1	63.715	63.215	64.215	-0.2389								0	0	0	0.8837	1	24096	24096		0.69038	0	1				10684	82	6156	6197	10320	10320					0.039341480428561226
FGDGGFGP	8	Unmodified	_FGDGGFGP_					0	0	0			REV__STAB1|p.L1057Sfs*33|1|0.28|ENSG00000010327|chr3:52513135-52513136|-/T|frameshift_variant	REV__STAB1|p.L1057Sfs*33|1|0.28|ENSG00000010327|chr3:52513135-52513136|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	376.9080810546875	2	377.163754	752.312954	0.094294	3.5564E-05	-0.24059	-9.0741E-05	-0.14629	-5.5177E-05	377.163776926396	33.063	0.15579	33.063	32.933	33.089	0					4	2	2	0	0	0	0.29766	1	12215	12215		5.2307	3.578	1	1190100	+		10685	10517	6157	6198	10321	10321					-0.07310966187651502
FGEAIGVDFPV	11	Unmodified	_FGEAIGVDFPV_					0	0	0		nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;GTF2IRD2|p.F606Sfs*8|1|0.44|ENSG00000196275|chr7:74797697-74797697|G/-|frameshift_variant;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B	nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	MSMS	HCT116MG_D190212_S4	4	575.79052734375	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.42	1	36.034	35.534	36.534	-0.38558								0	0	0	0.92235	1	13327	13327		17.113	3.2068	1				10686	5329	6158	6199	10322	10322					0.0018230589482755022
FGFCCCFC	8	Unmodified	_FGFCCCFC_					0	0	0			REV__ENST00000560400.1_1_17:40007277-40007520:-|nuORF	REV__ENST00000560400.1_1_17:40007277-40007520:-|nuORF	MSMS	HCT116MG_D190212_S4	4	465.25079345703125	2	465.144281	928.274008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.943	1	36.558	36.058	37.058	-0.38486								0	0	0	0.8837	1	13539	13539		2.8892	0.31174	1		+		10687	16489	6159	6200	10323	10323					-0.19299797401208707
FGGEPLSY	8	Unmodified	_FGGEPLSY_					0	0	0		ENST00000464011.1_1_3:195801200-195803970:-|nuORF;ENSG00000072274|ENST00000360110|TFRC	ENST00000464011.1_1_3:195801200-195803970:-|nuORF	ENST00000464011.1_1_3:195801200-195803970:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	869.4047241210938	1	869.40396	868.396684	0.6729	0.00058503	0.075883	6.5973E-05	0.74879	0.000651	869.4040675723759	43.261	0.36447	43.261	43.056	43.42	0					9	6	2	0	0	0	0.070772	1	16362	16362		101.72	52.053	1	9442800			10688	1266	6160	6201	10324	10324					-0.042778548106184644
FGGEPLSY	8	Unmodified	_FGGEPLSY_					0	0	0		ENST00000464011.1_1_3:195801200-195803970:-|nuORF;ENSG00000072274|ENST00000360110|TFRC	ENST00000464011.1_1_3:195801200-195803970:-|nuORF	ENST00000464011.1_1_3:195801200-195803970:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	869.4048461914062	1	869.40396	868.396684	0.40938	0.00035592	0.56041	0.00048722	0.96979	0.00084314	869.4040481510071	43.312	0.41308	43.239	43.045	43.458	-0.073372					12	7	2	0	0	0	0.057785	1	16419	16419		114.94	65.275	1	18794000			10689	1266	6160	6201	10325	10325					-0.042778548106184644
FGGHRGGL	8	Unmodified	_FGGHRGGL_					0	0	0			REV__RYR1|p.E798G|1|0.27|ENSG00000196218|chr19:38460407-38460407|A/G|missense_variant	REV__RYR1|p.E798G|1|0.27|ENSG00000196218|chr19:38460407-38460407|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	400.713134765625	2	400.711737	799.40892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.889	1	29.889	29.389	30.389	0								0	0	0	0.8837	1	10941	10941		0.79363	0	1		+		10690	17486	6161	6202	10326	10326					0.001192264430983414
FGGRSSGP	8	Unmodified	_FGGRSSGP_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000509706.1_1_8:83203861-83203996:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	764.3699951171875	1	764.368578	763.361301	0.69637	0.00053228	0.23924	0.00018287	0.93561	0.00071515	764.3688181705027	19.209	0.3123	19.209	19.027	19.339	0					8	5	2	0	0	0	0.12693	2	6654	6617;6654		88.904	17.77	1	5642600			10691	441	6162	6203	10327;10328	10328					-0.029844725477573775
FGGRSSGP	8	Unmodified	_FGGRSSGP_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000509706.1_1_8:83203861-83203996:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	382.68780517578125	2	382.687927	763.361301	-0.24784	-9.4844E-05	0.33036	0.00012643	0.082525	3.1581E-05	382.68792240643825	19.222	0.67689	19.222	18.819	19.495	0					23	12	3	0	0	0	0.065113	1	6631	6631		107.19	45.83	1	25778000			10692	441	6162	6203	10329	10329					-0.029844725477573775
FGGSRNMGGP	10	Unmodified	_FGGSRNMGGP_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S1	1	490.22430419921875	2	490.224351	978.434149	0.29307	0.00014367	-0.075766	-3.7142E-05	0.2173	0.00010653	490.2242032914696	24.978	0.41905	24.978	24.725	25.144	0					13	7	2	0	0	0	0.011502	1	8986	8986		140.63	92.287	1	6290800			10693	2769	6163	6204	10330	10330					-0.05593086816634241
FGICIELM	8	Unmodified	_FGICIELM_					0	0	0			REV__ENSG00000129048|ENST00000249887|ACKR4	REV__ENSG00000129048|ENST00000249887|ACKR4	MSMS	HCT116MG_D190212_S4	4	463.229736328125	2	463.229725	924.444896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.073	1	26.762	26.262	27.262	-0.3114								0	0	0	0.8837	1	9675	9675		5.7604	0.52976	1		+		10694	11883	6164	6205	10331	10331					-0.020348204865968
FGIYRFLPF	9	Unmodified	_FGIYRFLPF_					0	0	0		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MSMS	HCT116MG_D190212_S3	3	580.3169555664062	2	580.318577	1158.6226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.065	1	56.786	56.286	57.286	-0.27913								0	0	0	0.76877	1	21678	21678		5.2307	2.9279	1				10695	4996	6165	6206	10332	10332					0.04963514099267741
FGNGRNTN	8	Unmodified	_FGNGRNTN_					0	0	0			REV__ENSG00000182263|ENST00000333129|FIGN	REV__ENSG00000182263|ENST00000333129|FIGN	MULTI-MSMS	HCT116MG_D190212_S2	2	879.41259765625	1	879.406754	878.399478	0.82956	0.00072952	4.2446	0.0037327	5.0742	0.0044623	879.4100197786645	19.664	0.26015	19.289	19.194	19.455	-0.37503					5	4	2	0	0	0	0.76189	1	6865	6865		15.847	3.3156	1	2447300	+		10696	13712	6166	6207	10333	10333					-0.044585866331090074
FGNGRNTN	8	Unmodified	_FGNGRNTN_					0	0	0			REV__ENSG00000182263|ENST00000333129|FIGN	REV__ENSG00000182263|ENST00000333129|FIGN	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	879.406754	878.399478	0.82956	0.00072952	4.2446	0.0037327	5.0742	0.0044623	879.4100197786645	19.664	0.26015	19.289	19.194	19.455	-0.37503	0	0	NaN	15.847	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2447300	+		10697	13712	6166	6207							-0.044585866331090074
FGPKEKIPML	10	Unmodified	_FGPKEKIPML_					0	0	0			REV__OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant	REV__OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	580.2434692382812	2	580.330827	1158.6471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.603	1	29.603	29.103	30.103	0								0	0	0	0.95381	1	10826	10826		3.9444	0.3479	1		+		10698	17377	6167	6208	10334	10334					0.0741240619047403
FGSCTUPSF	9	Unmodified	_FGSCTUPSF_					0	0	0		nc|ENSG00000211452|P49895-5|DIO1;nc|ENSG00000211452|P49895-2|DIO1;ENSG00000211452|ENST00000361921|DIO1	nc|ENSG00000211452|P49895-5|DIO1	nc|ENSG00000211452|P49895-5|DIO1	MSMS	HCT116MG_D190212_S4	4	498.6556396484375	2	498.655364	995.296175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.886	1	51.54	51.04	52.04	-0.34538								0	0	0	0.76967	1	19325	19325		0	0	0				10699	6400	6168	6209	10335	10335					-0.20166078690863287
FGSWQDYYTWR	11	Unmodified	_FGSWQDYYTWR_					0	0	0		ENST00000571782.1_1_17:4647099-4647876:+|nuORF;ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15	ENST00000571782.1_1_17:4647099-4647876:+|nuORF	ENST00000571782.1_1_17:4647099-4647876:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	754.834228515625	2	754.833308	1507.65206	0.93968	0.0007093	1.1562	0.00087271	2.0958	0.001582	754.8341645471183	26.006	0.26102	26.006	25.875	26.136	0					7	4	2	0	0	0	0.69138	1	9385	9385		24.991	1.2012	1	15004000			10700	3722	6169	6210	10336	10336					-0.08145618413232114
FGTYVPGY	8	Unmodified	_FGTYVPGY_					0	0	0		nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1;ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1	nc|ENSG00000205336|Q9Y653-5|ADGRG1	nc|ENSG00000205336|Q9Y653-5|ADGRG1	MSMS	HCT116MG_D190212_S4	4	452.2139587402344	2	452.215986	902.417419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.987	1	31.611	31.111	32.111	-0.37529								0	0	0	0.8837	1	11632	11632		10.183	0	1				10701	6380	6170	6211	10337	10337					-0.03769264430957264
FGYDEEQPL	9	Unmodified	_FGYDEEQPL_					0	0	0			REV__PREX1|p.L957Pfs*50|1|0.25|ENSG00000124126|chr20:48650154-48650155|-/G|frameshift_variant	REV__PREX1|p.L957Pfs*50|1|0.25|ENSG00000124126|chr20:48650154-48650155|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	549.2406005859375	2	549.242929	1096.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.92	1	30.659	30.159	31.159	-0.26071								0	0	0	0.32721	1	11277	11277		38.151	11.268	1		+		10702	11777	6171	6212	10338	10338					-0.07307136789881952
FHAGWAGV	8	Unmodified	_FHAGWAGV_					0	0	0			REV__tr|U7T5Z3|U7T5Z3_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00139PE=3SV=1	REV__tr|U7T5Z3|U7T5Z3_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00139PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	422.70880126953125	2	422.708663	843.402772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.424	1	27.424	26.924	27.924	0								0	0	0	0.8837	1	9950	9950		11.114	4.7604	1		+		10703	17992	6172	6213	10339	10339					-0.025192917884282906
FHAGWAGV	8	Unmodified	_FHAGWAGV_					0	0	0			REV__tr|U7T5Z3|U7T5Z3_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00139PE=3SV=1	REV__tr|U7T5Z3|U7T5Z3_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00139PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	422.70867919921875	2	422.708663	843.402772	0.091361	3.8619E-05	0.24301	0.00010272	0.33437	0.00014134	422.7086648377473	27.971	0.25798	27.629	27.5	27.758	-0.34201					8	4	2	0	0	0	0.68942	1	10206	10206		24.21	13.095	1	44475000	+		10704	17992	6172	6213	10340	10340					-0.025192917884282906
FHAPWVFTR	9	Unmodified	_FHAPWVFTR_					0	0	0			REV__nc|ENSG00000119725|Q86VK4-2|ZNF410	REV__nc|ENSG00000119725|Q86VK4-2|ZNF410	MSMS	HCT116MG_D190212_S1	1	580.9489135742188	2	580.803626	1159.5927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.685	1	23.685	23.185	24.185	0								0	0	0	0.76694	1	8446	8446		11.64	1.5664	1		+		10705	11669	6173	6214	10341	10341					0.01928575153942802
FHGEGTLY	8	Unmodified	_FHGEGTLY_					0	0	0		ENSG00000185681|ENST00000373764|MORN5;nc|ENSG00000185681|Q5VZ52-2|MORN5	ENSG00000185681|ENST00000373764|MORN5	ENSG00000185681|ENST00000373764|MORN5	MULTI-SECPEP	HCT116MG_D190212_S2	2	462.7612609863281	2	462.216517	922.418482	0.49961	0.00023093	0.32968	0.00015238	0.82929	0.00038331	462.2166268646967	29.654	0.20689	29.353	29.185	29.392	-0.30095					6	3	2	0	0	0	0.28869	1	10841	10841		24.674	15.291	1	8116000			10706	5840	6174	6215	10342	10342					-0.04583050062046823
FHKKERRMRLY	11	Unmodified	_FHKKERRMRLY_					0	0	0		CACNA1A|p.F477L|1|0.22|ENSG00000141837|chr19:13317236-13317236|G/T|missense_variant	CACNA1A|p.F477L|1|0.22|ENSG00000141837|chr19:13317236-13317236|G/T|missense_variant	CACNA1A|p.F477L|1|0.22|ENSG00000141837|chr19:13317236-13317236|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	782.441650390625	2	782.438086	1562.86162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.204	1	38.111	37.611	38.611	-0.09301								0	0	0	0.95636	1	14345	14345		2.9952	1.6657	1				10707	301	6175	6216	10343	10343					0.10270346058950963
FHKLVRLIISL	11	Unmodified	_FHKLVRLIISL_					0	0	0			REV__ENST00000369760.8_1_6:80877466-80879537:+|nuORF	REV__ENST00000369760.8_1_6:80877466-80879537:+|nuORF	MSMS	HCT116MG_D190212_S3	3	669.93505859375	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.325	1	47.01	46.51	47.51	-0.31525								0	0	0	0.95925	1	17769	17769		1.4819	0	1		+		10708	15048	6176	6217	10344	10344					0.19931356450047133
FHLVLCIIQPI	11	Unmodified	_FHLVLCIIQPI_					0	0	0			REV__ENST00000312465.11_1_4:81208372-81208576:+|nuORF	REV__ENST00000312465.11_1_4:81208372-81208576:+|nuORF	MSMS	HCT116MG_D190212_S4	4	648.3824462890625	2	648.380852	1294.74715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.029	1	42.654	42.154	43.154	-0.37493								0	0	0	0.95925	1	15836	15836		1.4819	0	1		+		10709	14843	6177	6218	10345	10345					0.11156643524304855
FHMWYRDR	8	Unmodified	_FHMWYRDR_					0	0	0			REV__ENSG00000197253|ENST00000606293|TPSB2	REV__ENSG00000197253|ENST00000606293|TPSB2	MSMS	HCT116MG_D190212_S4	4	605.7845458984375	2	605.782367	1209.55018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.736	1	52.396	51.896	52.896	-0.34023								0	0	0	0.8837	1	19668	19668		2.8892	1.2366	1		+		10710	14064	6178	6219	10346	10346					-0.04621143245935855
FHNIWTWFR	9	Unmodified	_FHNIWTWFR_					0	0	0			REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MSMS	HCT116MG_D190212_S1	1	653.82861328125	2	653.827632	1305.64071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.473	1	51.473	50.973	51.973	0								0	0	0	0.76818	1	19667	19667		7.2892	0.56607	1		+		10711	11139	6179	6220	10347	10347					0.00011649073940134258
FHRNIFWRKRK	11	Unmodified	_FHRNIFWRKRK_					0	0	0		ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENST00000583028.1_1_17:62175367-62207458:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.7504272460938	3	529.975899	1586.90587	0.37279	0.00019757	1.9317	0.0010238	2.3045	0.0012213	529.9770166827954	23.345	0.31092	22.96	22.83	23.141	-0.3852					7	5	2	0	0	0	0.36628	1	8362	8362		0.45452	0.046251	1	20045000			10712	8963	6180	6221	10348	10348					0.13589118267418598
FHRNRRVTRR	10	Unmodified	_FHRNRRVTRR_					0	0	0		ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	MULTI-MSMS	HCT116MG_D190212_S1	1	466.608154296875	3	466.608098	1396.80247	0.31367	0.00014636	0.069051	3.222E-05	0.38272	0.00017858	466.6079953727311	53.385	2.4113	53.385	52.125	54.536	0					131	46	4	0	0	0	0.88673	1	20031	20031		0.77653	0.63664	1	405910000			10713	4526	6181	6222	10349	10349					0.11993630879624106
FHSPFIVKNYR	11	Unmodified	_FHSPFIVKNYR_					0	0	0		MSH3|p.E787K|1|0.13|ENSG00000113318|chr5:80778760-80778760|G/A|missense_variant	MSH3|p.E787K|1|0.13|ENSG00000113318|chr5:80778760-80778760|G/A|missense_variant	MSH3|p.E787K|1|0.13|ENSG00000113318|chr5:80778760-80778760|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	469.5634765625	3	469.922578	1406.7459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.694	1	21.694	21.194	22.194	0								0	0	0	0.95366	1	7644	7644		4.4062	0.81909	1				10714	9343	6182	6223	10350	10350					0.05880145479750354
FIASKGVKLV	10	Unmodified	_FIASKGVKLV_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ACTN1|p.N119Efs*3|1|0.38|ENSG00000072110|chr14:68912228-68912229|-/TC|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	HCT116MG_D190212_S2	2	531.340087890625	2	531.33951	1060.66447	0.5741	0.00030504	0.18586	9.8757E-05	0.75996	0.0004038	531.3396544325425	36.484	0.2075	36.356	36.226	36.434	-0.12799					6	3	2	0	0	0	0.039616	1	13656	13656		94.909	58.782	1	17699000			10715	3079;1262;8430	6183	6224	10351	10351					0.13656069787793967
FIASKGVKLV	10	Unmodified	_FIASKGVKLV_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ACTN1|p.N119Efs*3|1|0.38|ENSG00000072110|chr14:68912228-68912229|-/TC|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	HCT116MG_D190212_S3	3	531.3400268554688	2	531.33951	1060.66447	0.35776	0.00019009	0.48426	0.0002573	0.84201	0.00044739	531.3396565579621	36.68	0.31224	36.379	36.197	36.509	-0.30113					6	5	2	0	0	0	0.072876	1	13563	13563		79.427	43.3	1	7603900			10716	3079;1262;8430	6183	6224	10352	10352					0.13656069787793967
FIASKGVKLV	10	Unmodified	_FIASKGVKLV_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ACTN1|p.N119Efs*3|1|0.38|ENSG00000072110|chr14:68912228-68912229|-/TC|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	HCT116MG_D190212_S4	4	531.3397827148438	2	531.33951	1060.66447	0.46126	0.00024509	0.060148	3.1959E-05	0.52141	0.00027705	531.339449580853	36.811	0.20638	36.426	36.281	36.487	-0.38486					5	3	2	0	0	0	0.28966	1	13505	13505		51.415	22.334	1	2875300			10717	3079;1262;8430	6183	6224	10353	10353					0.13656069787793967
FIASLSLIFIE	11	Unmodified	_FIASLSLIFIE_					0	0	0		tr|U7SSG3|U7SSG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01626PE=4SV=1	tr|U7SSG3|U7SSG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01626PE=4SV=1	tr|U7SSG3|U7SSG3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01626PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	626.861328125	2	626.863015	1251.71148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.923	1	47.607	47.107	48.107	-0.31596								0	0	0	0.49457	1	18010	18010		47.749	5.9091	1				10718	18416	6184	6225	10354	10354					0.09568884548298229
FIDASRLVY	9	Unmodified	_FIDASRLVY_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-5|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7971801757812	2	542.295299	1082.57605	0.68738	0.00037276	-0.38606	-0.00020936	0.30132	0.00016341	542.294976077483	47.484	0.30939	47.362	47.182	47.491	-0.12175					7	5	2	0	0	0	0.16285	1	18129	18129		45.74	3.9002	1	15481000			10719	1019	6185	6226	10355	10355					0.038060294773458736
FIDDANYSV	9	Unmodified	_FIDDANYSV_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	HCT116MG_D190212_S1	1	1043.4683837890625	1	1043.46802	1042.46074	0.61876	0.00064566	-0.16305	-0.00017014	0.45571	0.00047552	1043.467930477973	42.279	0.25975	42.279	42.123	42.383	0					6	4	2	0	0	0	0.097615	1	15963	15963		58.679	35.943	1	8532800			10720	4239	6186	6227	10356	10356					-0.05879119444330172
FIDDANYSV	9	Unmodified	_FIDDANYSV_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	1043.4688720703125	1	1043.46802	1042.46074	0.71782	0.00074902	-0.032504	-3.3917E-05	0.68531	0.0007151	1043.4677543379746	42.317	0.25879	42.248	42.12	42.379	-0.068199					9	4	3	0	0	0	0.01389	1	16022	16022		103.75	63.799	1	52409000			10721	4239	6186	6227	10357	10357					-0.05879119444330172
FIDDANYSV	9	Unmodified	_FIDDANYSV_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	1043.46875	1	1043.46802	1042.46074	0.62931	0.00065667	-0.17966	-0.00018747	0.44966	0.0004692	1043.4678296225875	42.578	0.31301	42.275	42.092	42.405	-0.30352					9	5	2	0	0	0	0.031089	1	15871	15871		85.272	37.523	1	10043000			10722	4239	6186	6227	10358	10358					-0.05879119444330172
FIDGNGIVP	9	Unmodified	_FIDGNGIVP_					0	0	0			REV__tr|U7SSI6|U7SSI6_FUSNUtRNA-dihydrouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01281PE=3SV=1	REV__tr|U7SSI6|U7SSI6_FUSNUtRNA-dihydrouridinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01281PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	931.4568481445312	1	931.488359	930.481082	0.9505	0.00088538	-0.14997	-0.00013969	0.80053	0.00074568	931.4881012576221	56.52	0.21037	56.338	56.207	56.418	-0.18261					7	3	3	0	0	0	0.55919	1	21759	21759		13.508	4.1604	1	60773000	+		10723	17768	6187	6228	10359	10359					0.013060960061466176
FIDHDITSQLY	11	Unmodified	_FIDHDITSQLY_					0	0	0		ENSG00000156787|ENST00000287380|TBC1D31;ENST00000524307.5_1_8:124089445-124141439:+|nuORF;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	MULTI-MSMS	HCT116MG_D190212_S2	2	676.3304443359375	2	676.330067	1350.64558	0.32395	0.0002191	0.34087	0.00023054	0.66482	0.00044964	676.3303530365114	45.204	0.41713	45.112	44.839	45.256	-0.092472					12	7	3	0	0	0	0.034401	1	17197	17197		110.67	75.743	1	27517000			10724	4298	6188	6229	10360	10360					-0.015715563645471775
FIDHDITSQLY	11	Unmodified	_FIDHDITSQLY_					0	0	0		ENSG00000156787|ENST00000287380|TBC1D31;ENST00000524307.5_1_8:124089445-124141439:+|nuORF;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	MULTI-MSMS	HCT116MG_D190212_S3	3	676.3307495117188	2	676.330067	1350.64558	0.90865	0.00061455	-0.14194	-9.6001E-05	0.76671	0.00051855	676.3300370790985	45.4	0.26106	45.089	44.939	45.2	-0.31094					6	4	2	0	0	0	0.39464	1	17024	17024		55.503	30.512	1	3141900			10725	4298	6188	6229	10361	10361					-0.015715563645471775
FIDKIIEET	9	Unmodified	_FIDKIIEET_					0	0	0			REV__nc|ENSG00000136371|P49914-2|MTHFS	REV__nc|ENSG00000136371|P49914-2|MTHFS	MULTI-MSMS	HCT116MG_D190212_S2	2	1107.593505859375	1	1107.59322	1106.58594	0.60933	0.00067489	-0.45154	-0.00050013	0.15779	0.00017476	1107.5925232309205	52.819	0.25659	52.63	52.501	52.758	-0.18922					7	4	2	0	0	0	0.026999	1	20318	20318		89.401	10.673	1	14116000	+		10726	12128	6189	6230	10362	10362					0.036911726920379806
FIDVDDERWHY	11	Unmodified	_FIDVDDERWHY_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	748.4354248046875	2	747.836048	1493.65754	1.2367	0.00092488	-0.98805	-0.0007389	0.24869	0.00018598	748.3359411703269	44.699	0.31482	44.614	44.376	44.691	-0.084797					7	5	2	0	0	0	0.36183	1	16995	16995		9.3831	0.63772	1	9179400			10727	3009	6190	6231	10363	10363					-0.06953939621394056
FIDWIEETI	9	Unmodified	_FIDWIEETI_					0	0	0		ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A	ENSG00000219073|ENST00000337107|CELA3B	ENSG00000219073|ENST00000337107|CELA3B	MULTI-SECPEP	HCT116MG_D190212_S2	2	583.30908203125	2	583.292422	1164.57029	0.52532	0.00030642	-4.3722	-0.0025503	-3.8469	-0.0022439	583.2890942864385	33.88	0.20776	33.694	33.594	33.802	-0.18539					6	3	2	0	0	0	0.05579	1	12604	12604		81.613	6.0425	1	14098000			10728	3776	6191	6232	10364	10364					-0.005411138249883152
FIEKSAEELD	10	Unmodified	_FIEKSAEELD_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1;BRD1|p.K432Rfs*26|1|0.18|ENSG00000100425|chr22:49823023-49823023|T/-|frameshift_variant	nc|ENSG00000100425|O95696|BRD1	nc|ENSG00000100425|O95696|BRD1	MSMS	HCT116MG_D190212_S2	2	394.1970520019531	3	394.195921	1179.56593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.599	1	28.269	27.769	28.769	-0.32987								0	0	0	0.94528	1	10438	10438		5.7834	0.38072	1				10729	1708	6192	6233	10365	10365					-0.016666230385681047
FIETASFIDV	10	Unmodified	_FIETASFIDV_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MSMS	HCT116MG_D190212_S4	4	571.2920532226562	2	571.292422	1140.57029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.706	1	56.406	55.906	56.906	-0.3004								0	0	0	0.94149	1	21264	21264		11.64	0	1				10730	3009	6193	6234	10366	10366					0.0056288617497557425
FIEYKNGEYSY	11	Unmodified	_FIEYKNGEYSY_					0	0	0		tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	706.8231201171875	2	706.822075	1411.6296	0.78178	0.00055258	-0.19851	-0.00014031	0.58327	0.00041227	706.8219481368741	56.145	0.20631	56.145	56.015	56.222	0					10	3	4	0	0	0	0.63759	1	21585	21585		31.268	4.0451	1	133640000			10731	18384	6194	6235	10367	10367					-0.059752626014415
FIEYKNGEYSY	11	Unmodified	_FIEYKNGEYSY_					0	0	0		tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	706.8223876953125	2	706.822075	1411.6296	1.0232	0.00072319	-0.22283	-0.0001575	0.80033	0.00056569	706.8218378538785	56.313	0.36226	56.13	55.949	56.312	-0.18261					17	6	5	0	0	0	0.46155	1	21728	21728		49.554	12.48	1	350380000			10732	18384	6194	6235	10368	10368					-0.059752626014415
FIFAICILMI	10	Unmodified	_FIFAICILMI_					0	0	0		ENST00000465725.1_1_7:108212170-108215134:+|nuORF;ENST00000491582.1_1_7:108210452-108212392:+|nuORF;ENSG00000128590|ENST00000249356|DNAJB9	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	MSMS	HCT116MG_D190212_S1	1	592.33251953125	2	592.334524	1182.6545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.532	1	27.532	27.032	28.032	0								0	0	0	0.95179	1	9994	9994		4.3292	0.38484	1				10733	3001	6195	6236	10369	10369					0.07047422466530406
FIFEWWYFHKH	11	Unmodified	_FIFEWWYFHKH_					0	0	0		ENST00000369669.5_1_1:113140697-113161406:-|nuORF;ENST00000485753.5_1_1:113153424-113159539:-|nuORF;ENST00000497235.5_1_1:113140697-113161735:-|nuORF;ENST00000498383.5_1_1:113153265-113161717:-|nuORF;ENST00000467335.5_1_1:113153424-113161735:-|nuORF;ENST00000479436.5_1_1:113134145-113161558:-|nuORF;ENST00000473206.5_1_1:113149890-113161735:-|nuORF;ENST00000463235.5_1_1:113098633-113162595:-|nuORF;ST7L|p.M420Ifs*18|1|0.1|ENSG00000007341|chr1:112556004-112556005|-/CAAAAGT|frameshift_variant;nc|ENSG00000007341|Q8TDW4-6|ST7L;ST7L|p.A541Cfs*2|1|0.05|ENSG00000007341|chr1:112541959-112541960|-/A|frameshift_variant;nc|ENSG00000007341|Q8TDW4-2|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-3|ST7L;ENSG00000007341|ENST00000358039|ST7L	ENST00000369669.5_1_1:113140697-113161406:-|nuORF	ENST00000369669.5_1_1:113140697-113161406:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	820.8975830078125	2	820.395879	1638.7772	0.77541	0.00063614	-1.2232	-0.0010035	-0.44779	-0.00036736	820.8963721220191	57.697	0.25874	57.697	57.516	57.775	0					11	4	3	0	0	0	0.74191	1	22227	22227		1.4819	1.1749	1	10431000			10734	845	6196	6237	10370	10370					-0.01663281486185042
FIFEWWYFHKH	11	Unmodified	_FIFEWWYFHKH_					0	0	0		ENST00000369669.5_1_1:113140697-113161406:-|nuORF;ENST00000485753.5_1_1:113153424-113159539:-|nuORF;ENST00000497235.5_1_1:113140697-113161735:-|nuORF;ENST00000498383.5_1_1:113153265-113161717:-|nuORF;ENST00000467335.5_1_1:113153424-113161735:-|nuORF;ENST00000479436.5_1_1:113134145-113161558:-|nuORF;ENST00000473206.5_1_1:113149890-113161735:-|nuORF;ENST00000463235.5_1_1:113098633-113162595:-|nuORF;ST7L|p.M420Ifs*18|1|0.1|ENSG00000007341|chr1:112556004-112556005|-/CAAAAGT|frameshift_variant;nc|ENSG00000007341|Q8TDW4-6|ST7L;ST7L|p.A541Cfs*2|1|0.05|ENSG00000007341|chr1:112541959-112541960|-/A|frameshift_variant;nc|ENSG00000007341|Q8TDW4-2|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-3|ST7L;ENSG00000007341|ENST00000358039|ST7L	ENST00000369669.5_1_1:113140697-113161406:-|nuORF	ENST00000369669.5_1_1:113140697-113161406:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	820.3960571289062	2	820.395879	1638.7772	1.1884	0.00097499	-1.1119	-0.00091219	0.076548	6.2799E-05	820.8961548548383	57.869	0.36604	57.594	57.464	57.83	-0.27434					20	6	4	0	0	0	0.74191	1	22006	22006		1.4819	0.28856	1	20594000			10735	845	6196	6237	10371	10371					-0.01663281486185042
FIFPAIFYFRI	11	Unmodified	_FIFPAIFYFRI_					0	0	0		SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant;ENSG00000188338|ENST00000614032|SLC38A3	SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant	SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	478.6040344238281	3	478.604186	1432.79073	-0.024653	-1.1799E-05	-0.015284	-7.315E-06	-0.039937	-1.9114E-05	478.6039304588589	50.859	0.25856	50.859	50.781	51.04	0					5	4	2	0	0	0	0.74191	1	19450	19450		4.4062	2.1534	1	11273000			10736	5978	6197	6238	10372	10372					0.09164576293051141
FIFSDTHEL	9	Unmodified	_FIFSDTHEL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	HCT116MG_D190212_S2	2	554.76953125	2	554.769114	1107.52368	0.16024	8.8899E-05	0.37623	0.00020872	0.53647	0.00029762	554.7694055744369	50.143	0.20431	49.977	49.838	50.042	-0.16559					8	3	3	0	0	0	0.33687	1	19234	19234		26.884	8.7487	1	28055000			10737	1847	6198	6239	10373	10373					-0.02578553656303484
FIIWLARR	8	Unmodified	_FIIWLARR_					0	0	0		ENSG00000188404|ENST00000236147|SELL;ENST00000463108.5_1_1:169670695-169680678:-|nuORF;nc|ENSG00000188404|P14151-2|SELL	ENSG00000188404|ENST00000236147|SELL	ENSG00000188404|ENST00000236147|SELL	MSMS	HCT116MG_D190212_S1	1	358.8909912109375	3	358.89055	1073.64982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.295	1	10.295	9.795	10.795	0								0	0	0	0.8837	1	3150	3150		0.40072	0	1				10738	5983	6199	6240	10374	10374					0.1159404243028348
FIKKCRLIY	9	Unmodified	_FIKKCRLIY_					0	0	0		nc|ENSG00000197619|Q8N8J6|ZNF615;nc|ENSG00000197619|Q8N8J6-3|ZNF615;ENSG00000197619|ENST00000598071|ZNF615	nc|ENSG00000197619|Q8N8J6|ZNF615	nc|ENSG00000197619|Q8N8J6|ZNF615	MSMS	HCT116MG_D190212_S2	2	592.353759765625	2	592.354637	1182.69472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.573	1	46.462	45.962	46.962	-0.11121								0	0	0	0.7689	1	17743	17743		4.756	0.42677	1				10739	6162	6200	6241	10375	10375					0.11068105181334431
FIKNLKILIP	10	Unmodified	_FIKNLKILIP_					0	0	0		ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant	ATL1|p.M371Wfs*29|1|0.04|ENSG00000198513|chr14:50623234-50623234|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	599.9003295898438	2	599.899734	1197.78492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.141	1	41.141	40.641	41.641	0								0	0	0	0.96263	1	15483	15483		3.9444	0.3479	1				10740	219	6201	6242	10376	10376					0.19393477781409274
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	547.3167114257812	3	547.317262	1638.92996	-0.30869	-0.00016895	-0.15157	-8.2959E-05	-0.46027	-0.00025191	547.3169900532567	38.373	0.41702	38.373	38.123	38.54	0					21	7	4	0	0	0	0.74191	1	14328	14328		0.40827	0.40827	1	29415000	+		10741	14719	6202	6243	10377	10377					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	820.9717407226562	2	820.472255	1638.92996	0.020747	1.7022E-05	-0.12524	-0.00010276	-0.10449	-8.5735E-05	820.4718761890666	38.318	0.31269	38.318	38.123	38.436	0					12	5	3	0	0	0	0.74191	1	14350	14350		1.1933	1.1933	1	15146000	+		10742	14719	6202	6243	10378	10378					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	819.9849853515625	2	820.472255	1638.92996	0.77675	0.0006373	0.39314	0.00032256	1.1699	0.00095986	820.472746525574	38.362	0.25824	38.269	38.063	38.322	-0.09301					6	4	2	0	0	0	0.74191	1	14398	14398		0.30703	0.30703	1	14853000	+		10743	14719	6202	6243	10379	10379					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	820.4727783203125	2	820.472255	1638.92996	0.8291	0.00068025	0.40576	0.00033292	1.2349	0.0010132	820.4725548060186	38.622	0.416	38.321	38.04	38.456	-0.30137					15	7	3	0	0	0	0.74191	1	14305	14305		0.30703	0.30703	1	10363000	+		10744	14719	6202	6243	10380	10380					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	547.3179321289062	3	547.317262	1638.92996	0.4159	0.00022763	0.18233	9.9791E-05	0.59822	0.00032742	547.6515965944739	38.674	0.39276	38.292	38.096	38.489	-0.38163					20	7	4	0	0	0	0.74191	1	14154	14154		0.08335	0.08335	1	16362000	+		10745	14719	6202	6243	10381	10381					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	820.97509765625	2	820.472255	1638.92996	0.72713	0.00059659	0.54573	0.00044775	1.2729	0.0010443	820.9741256701449	38.678	0.34686	38.296	38.142	38.489	-0.38163					16	6	4	0	0	0	0.74191	1	14177	14177		1.1933	1.1933	1	9435400	+		10746	14719	6202	6243	10382	10382					0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	547.317262	1638.92996	-0.30869	-0.00016895	-0.15157	-8.2959E-05	-0.46027	-0.00025191	547.3169900532567	38.373	0.41702	38.373	38.123	38.54	0	0.042398	-0.0002891	NaN	0.40827	21	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29415000	+		10747	14719	6202	6243							0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	820.472255	1638.92996	0.77675	0.0006373	0.39314	0.00032256	1.1699	0.00095986	820.472746525574	38.362	0.25824	38.269	38.063	38.322	-0.09301	-0.031692	-6.7685E-05	NaN	1.1933	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14853000	+		10748	14719	6202	6243							0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	820.472255	1638.92996	0.8291	0.00068025	0.40576	0.00033292	1.2349	0.0010132	820.4725548060186	38.622	0.416	38.321	38.04	38.456	-0.30137	0.019589	-4.6972E-05	NaN	1.1933	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10363000	+		10749	14719	6202	6243							0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	820.472255	1638.92996	0.72713	0.00059659	0.54573	0.00044775	1.2729	0.0010443	820.9741256701449	38.678	0.34686	38.296	38.142	38.489	-0.38163	-0.0049801	0.0001827	NaN	1.1933	16	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9435400	+		10750	14719	6202	6243							0.13604958701102987
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	547.317262	1638.92996	0.4159	0.00022763	0.18233	9.9791E-05	0.59822	0.00032742	547.6515965944739	38.674	0.39276	38.292	38.096	38.489	-0.38163	-0.038208	0.00025915	NaN	0.40827	20	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16362000	+		10751	14719	6202	6243							0.13604958701102987
FILVPPPT	8	Unmodified	_FILVPPPT_					0	0	0			REV__ENST00000504807.5_1_5:176939673-176941736:-|nuORF	REV__ENST00000504807.5_1_5:176939673-176941736:-|nuORF	MSMS	HCT116MG_D190212_S3	3	442.26605224609375	2	442.268022	882.521491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.371	1	48.055	47.555	48.555	-0.31596								0	0	0	0.8837	1	18191	18191		5.2307	0	1		+		10752	13753	6203	6244	10383	10383					0.07553062396561927
FILVRERDLP	10	Unmodified	_FILVRERDLP_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MSMS	HCT116MG_D190212_S4	4	629.3707275390625	2	629.36933	1256.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.15	1	42.775	42.275	43.275	-0.37493								0	0	0	0.95507	1	15869	15869		3.5965	0.31518	1				10753	6672	6204	6245	10384	10384					0.106013407312048
FINPLFLK	8	Unmodified	_FINPLFLK_					0	0	0		RIN2|p.P357Hfs*39|1|0.48|ENSG00000132669|chr20:19974942-19974942|C/-|frameshift_variant;RIN2|p.I627Sfs*4|2|0.25|ENSG00000132669|chr20:19975750-19975750|C/-|frameshift_variant;RIN2|p.I627Hfs*7|1|0.47|ENSG00000132669|chr20:19975749-19975750|-/C|frameshift_variant;RIN2|p.D879Gfs*3|1|0.16|ENSG00000132669|chr20:20000731-20000732|-/G|frameshift_variant;ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	RIN2|p.P357Hfs*39|1|0.48|ENSG00000132669|chr20:19974942-19974942|C/-|frameshift_variant	RIN2|p.P357Hfs*39|1|0.48|ENSG00000132669|chr20:19974942-19974942|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	496.8023681640625	2	496.302396	990.590239	0.53882	0.00026742	0.91697	0.00045509	1.4558	0.00072251	496.30377880039026	47.188	0.61885	47.066	46.82	47.439	-0.12175					22	11	3	0	0	0	0.83066	1	18061	18061		7.9102	2.6795	1	20746000			10754	3199	6205	6246	10385	10385					0.09456726696271289
FIQIKKWLMF	10	Unmodified	_FIQIKKWLMF_					0	0	0			REV__TCHHL1|p.Q46Sfs*15|1|0.42|ENSG00000182898|chr1:152088009-152088009|A/-|frameshift_variant	REV__TCHHL1|p.Q46Sfs*15|1|0.42|ENSG00000182898|chr1:152088009-152088009|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	676.9284057617188	2	677.391219	1352.76789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.216	1	51.037	50.537	51.537	-0.17868								0	0	0	0.93854	1	19645	19645		7.2892	1.0834	1		+		10755	17623	6206	6247	10386	10386					0.10561233903922584
FIRAIRMIRLA	11	Unmodified	_FIRAIRMIRLA_					0	0	0			REV__ENSG00000162975|ENST00000295082|KCNF1	REV__ENSG00000162975|ENST00000295082|KCNF1	MULTI-MSMS	HCT116MG_D190212_S1	1	680.9264526367188	2	680.423916	1358.83328	0.84504	0.00057499	0.90422	0.00061525	1.7493	0.0011902	680.4242441310538	54.157	0.30703	54.157	54.026	54.333	0					15	5	4	0	0	0	0.74191	1	20765	20765		2.9952	2.9952	1	138190000	+		10756	12903	6207	6248	10387	10387					0.168216481496529
FIRAIRMIRLA	11	Unmodified	_FIRAIRMIRLA_					0	0	0			REV__ENSG00000162975|ENST00000295082|KCNF1	REV__ENSG00000162975|ENST00000295082|KCNF1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	680.423916	1358.83328	0.84504	0.00057499	0.90422	0.00061525	1.7493	0.0011902	680.4242441310538	54.157	0.30703	54.157	54.026	54.333	0	0	0	NaN	2.9952	15	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138190000	+		10757	12903	6207	6248							0.168216481496529
FIRKHELKMEI	11	Unmodified	_FIRKHELKMEI_					0	0	0		ENST00000320248.3_1_8:1954634-1955009:+|nuORF	ENST00000320248.3_1_8:1954634-1955009:+|nuORF	ENST00000320248.3_1_8:1954634-1955009:+|nuORF	MSMS	HCT116MG_D190212_S2	2	722.4097900390625	2	722.410672	1442.80679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.017	1	28.7	28.2	29.2	-0.31613								0	0	0	0.94755	1	10610	10610		7.609	3.0801	1				10758	7097	6208	6249	10388	10388					0.10309914467666204
FIRVHRLLRPL	11	Unmodified	_FIRVHRLLRPL_					0	0	0		KCNH4|p.P505L|1|0.39|ENSG00000089558|chr17:42169553-42169553|G/A|missense_variant	KCNH4|p.P505L|1|0.39|ENSG00000089558|chr17:42169553-42169553|G/A|missense_variant	KCNH4|p.P505L|1|0.39|ENSG00000089558|chr17:42169553-42169553|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	710.4545288085938	2	710.456605	1418.89866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.822	1	47.822	47.322	48.322	0								0	0	0	0.95925	1	18180	18180		1.4819	0.15237	1				10759	9254	6209	6250	10389	10389					0.20596385667022332
FISEFEHRV	9	Unmodified	_FISEFEHRV_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	HCT116MG_D190212_S2	2	582.8356323242188	2	582.29583	1162.57711	0.35387	0.00020606	-0.55574	-0.00032361	-0.20187	-0.00011755	582.2956645694159	37.238	0.25797	37.135	37.026	37.284	-0.10318					9	4	3	0	0	0	0.0080847	2	13934	13934;13990		118.07	72.369	1	19960000			10760	5838	6210	6251	10390;10391	10390					0.0023224384622153593
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		ENSG00000109654|ENST00000338700|TRIM2;nc|ENSG00000109654|Q9C040|TRIM2;TRIM2|p.V492*|1|0.15|ENSG00000109654|chr4:153315525-153315525|G/-|frameshift_variant	ENSG00000109654|ENST00000338700|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	MULTI-MSMS	HCT116MG_D190212_S2	2	550.3121337890625	2	550.310949	1098.60735	0.37455	0.00020612	0.81083	0.00044621	1.1854	0.00065233	550.3115906666479	54.211	0.25737	54.022	53.893	54.15	-0.1894					8	4	3	0	0	0	0.061422	1	20890	20890		69.105	27.265	1	28599000			10761	2214	6211	6252	10392	10392					0.06198602511426543
FISGNGVY	8	Unmodified	_FISGNGVY_					0	0	0			REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	428.7135314941406	2	428.713611	855.412668	-0.096736	-4.1472E-05	0.35469	0.00015206	0.25795	0.00011059	428.7136040331106	29.925	0.36146	29.624	29.444	29.805	-0.30095					13	6	3	0	0	0	0.36164	1	10985	10985		53.576	2.7205	1	111390000	+		10762	17872	6212	6253	10393	10393					-0.02082148573708764
FISGNGVY	8	Unmodified	_FISGNGVY_					0	0	0			REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	856.4199829101562	1	856.419945	855.412668	0.58587	0.00050175	-0.096779	-8.2883E-05	0.4891	0.00041887	856.41953996272	29.925	0.2581	29.624	29.495	29.753	-0.30095					8	4	2	0	0	0	0.55794	1	11008	11008		36.044	1.9418	1	33519000	+		10763	17872	6212	6253	10394	10394					-0.02082148573708764
FISGNGVY	8	Unmodified	_FISGNGVY_					0	0	0			REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	REV__tr|U7SYX7|U7SYX7_FUSNUD-alanyl-D-alaninecarboxypeptidase(Penicillin-bindingprotein5/6)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00797PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	428.713611	855.412668	0.28181	0.00012082	-0.36057	-0.00015458	-0.078759	-3.3765E-05	428.7133687840267	30.035	0.21158	29.797	29.662	29.873	-0.23729	0.0864	-0.00025279	NaN	53.576	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6537700	+		10764	17872	6212	6253							-0.02082148573708764
FIWKAQKI	8	Unmodified	_FIWKAQKI_					0	0	0		tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	516.813720703125	2	517.313295	1032.61204	0.26369	0.00013641	3.1581	0.0016337	3.4218	0.0017701	517.3152347112257	48.743	0.20494	48.743	48.614	48.819	0					5	3	2	0	0	0	0.31507	1	18568	18568		14.582	0	1	15604000			10765	18551	6213	6254	10395	10395					0.09703531444847613
FKDEELFPLQ	10	Unmodified	_FKDEELFPLQ_					0	0	0		nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF;ENSG00000136051|ENST00000332180|WASHC4	nc|ENSG00000136051|Q2M389-2|WASHC4	nc|ENSG00000136051|Q2M389-2|WASHC4	MSMS	HCT116MG_D190212_S2	2	633.3269653320312	2	633.324254	1264.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.427	1	46.315	45.815	46.815	-0.11121								0	0	0	0.7978	1	17683	17683		29.082	5.061	1				10766	3392	6214	6255	10396	10396					0.012222466120874742
FKDLGEENFK	10	Unmodified	_FKDLGEENFK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	613.806884765625	2	613.806228	1225.5979	0.33809	0.00020752	0.37823	0.00023216	0.71632	0.00043968	613.8064305712954	32.352	0.41677	32.352	32.17	32.587	0					12	7	3	0	0	0	0.00054456	1	11939	11939		185.27	109.7	1	25301000		+	10767	554	6215	6256	10397	10397					-0.005872105647767967
FKDLGEENFK	10	Unmodified	_FKDLGEENFK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	409.5397033691406	3	409.539911	1225.5979	-0.17812	-7.2946E-05	-0.0087287	-3.5748E-06	-0.18685	-7.6521E-05	409.87420832332606	32.375	0.26063	32.375	32.274	32.534	0					6	4	2	0	0	0	0.56431	1	11997	11997		22.109	14.263	1	4226800		+	10768	554	6215	6256	10398	10398					-0.005872105647767967
FKDLGEENFK	10	Unmodified	_FKDLGEENFK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	613.808837890625	2	613.806228	1225.5979	0.59808	0.0003671	0.38226	0.00023463	0.98033	0.00060173	613.8065778067332	32.715	0.52097	32.43	32.091	32.612	-0.28511					14	9	3	0	0	0	0.011922	1	11988	11988		139.32	73.848	1	18094000		+	10769	554	6215	6256	10399	10399					-0.005872105647767967
FKDLGEENFK	10	Unmodified	_FKDLGEENFK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S3	3	409.5399169921875	3	409.539911	1225.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.741	1	32.456	31.956	32.956	-0.28511								0	0	0	0.0461	1	12011	12011		89.533	34.066	1			+	10770	554	6215	6256	10400	10400					-0.005872105647767967
FKDLGEENFK	10	Unmodified	_FKDLGEENFK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	613.8093872070312	2	613.806228	1225.5979	0.77511	0.00047577	0.65053	0.0003993	1.4256	0.00087507	613.8066350442523	32.821	0.41536	32.442	32.105	32.52	-0.37924					17	7	3	0	0	0	0.011922	1	11942	11942		139.32	73.848	1	11784000		+	10771	554	6215	6256	10401	10401					-0.005872105647767967
FKDLGEENFK	10	Unmodified	_FKDLGEENFK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	409.539794921875	3	409.539911	1225.5979	0.19068	7.809E-05	-0.25849	-0.00010586	-0.067817	-2.7774E-05	409.539755853643	32.816	0.25961	32.437	32.261	32.52	-0.37923					10	4	3	0	0	0	0.029228	1	11961	11961		85.417	43.349	1	6562000		+	10772	554	6215	6256	10402	10402					-0.005872105647767967
FKDLGEENFK	10	Unmodified	_FKDLGEENFK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MATCH	HCT116MG_D190212_S2	2		2	613.806228	1225.5979	0.32884	0.00020185	0.43173	0.000265	0.76058	0.00046685	613.8065561464231	32.563	0.20871	32.333	32.202	32.411	-0.23009	-0.056552	4.3283E-05	NaN	185.27	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16339000		+	10773	554	6215	6256							-0.005872105647767967
FKFCIRNKP	9	Unmodified	_FKFCIRNKP_					0	0	0			REV__ENST00000464669.1_1_7:116502674-116546397:+|nuORF	REV__ENST00000464669.1_1_7:116502674-116546397:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	384.22802734375	3	384.883066	1151.62737	-0.044131	-1.6985E-05	-3.5147	-0.0013527	-3.5588	-0.0013697	384.88215229644806	27.754	0.30731	27.412	27.295	27.602	-0.34201					6	5	2	0	0	0	0.25248	1	10058	10058		16.149	5.9985	1	6591700	+		10774	14162	6216	6257	10403	10403					0.057620749703801266
FKFHDFETWKW	11	Unmodified	_FKFHDFETWKW_					0	0	0		ENSG00000121940|ENST00000369969|CLCC1	ENSG00000121940|ENST00000369969|CLCC1	ENSG00000121940|ENST00000369969|CLCC1	MSMS	HCT116MG_D190212_S4	4	785.4600830078125	2	785.877519	1569.74048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.41	1	33.028	32.528	33.528	-0.38223								0	0	0	0.95954	1	12162	12162		1.3295	0	1				10775	2743	6217	6258	10404	10404					-0.02159578102737214
FKFQRYFRQKP	11	Unmodified	_FKFQRYFRQKP_					0	0	0		WSCD2|p.R14Q|1|0.39|ENSG00000075035|chr12:108195873-108195873|G/A|missense_variant	WSCD2|p.R14Q|1|0.39|ENSG00000075035|chr12:108195873-108195873|G/A|missense_variant	WSCD2|p.R14Q|1|0.39|ENSG00000075035|chr12:108195873-108195873|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	515.6190795898438	3	515.62101	1543.8412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.201	1	15.284	14.784	15.784	0.083271								0	0	0	0.96121	1	4955	4955		0.45452	0.35968	1				10776	18697	6218	6259	10405	10405					0.09103498670765475
FKGAKGPS	8	Unmodified	_FKGAKGPS_					0	0	0		ENST00000545576.1_1_12:8757676-8765375:-|nuORF	ENST00000545576.1_1_12:8757676-8765375:-|nuORF	ENST00000545576.1_1_12:8757676-8765375:-|nuORF	MSMS	HCT116MG_D190212_S3	3	396.2227478027344	2	396.224146	790.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.718	1	59.46	58.96	59.96	-0.25832								0	0	0	0.8837	1	22749	22749		2.3027	1.5091	1				10777	8719	6219	6260	10406	10406					0.030138615258124446
FKHKHSRDR	9	Unmodified	_FKHKHSRDR_					0	0	0		ZNF521|p.R159H|1|0.23|ENSG00000198795|chr18:25227442-25227442|C/T|missense_variant	ZNF521|p.R159H|1|0.23|ENSG00000198795|chr18:25227442-25227442|C/T|missense_variant	ZNF521|p.R159H|1|0.23|ENSG00000198795|chr18:25227442-25227442|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	605.8316040039062	2	605.831237	1209.64792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.695	1	13.77	13.27	14.27	0.074899								0	0	0	0.7701	1	4360	4360		0.52476	0	1				10778	18731	6220	6261	10407	10407					0.05148381674416669
FKIFKELC	8	Unmodified	_FKIFKELC_					0	0	0			REV__SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant;REV__ENST00000589561.5_1_19:10746968-10754058:+|nuORF	REV__SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	514.2872314453125	2	514.285889	1026.55722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.951	1	37.568	37.068	38.068	-0.38283								0	0	0	0.8837	1	13894	13894		12.532	0	1		+		10779	14193;11890	6221	6262	10408	10408					0.04500776581926402
FKIFLKYL	8	Unmodified	_FKIFLKYL_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.S2058Ffs*2|1|0.3|ENSG00000151835|chr13:23337703-23337704|-/A|frameshift_variant;SACS|p.P2063Sfs*7|1|0.36|ENSG00000151835|chr13:23337689-23337690|-/A|frameshift_variant;SACS|p.S2058Lfs*19|1|0.1|ENSG00000151835|chr13:23337704-23337704|A/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S3	3	536.3348999023438	2	536.333696	1070.65284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.474	1	58.204	57.704	58.704	-0.26932								0	0	0	0.8837	1	22245	22245		2.5775	0.51773	1				10780	4129	6222	6263	10409	10409					0.12033872764459375
FKKKIKVRV	9	Unmodified	_FKKKIKVRV_					0	0	0			REV__tr|U7SX92|U7SX92_FUSNUSuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00915PE=4SV=1	REV__tr|U7SX92|U7SX92_FUSNUSuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00915PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	573.3973999023438	2	573.397693	1144.78083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.283	1	24.222	23.722	24.722	-0.061449								0	0	0	0.77025	1	8616	8616		0	0	1		+		10781	17862	6223	6264	10410	10410					0.21423433078348353
FKKKKTRKLKI	11	Unmodified	_FKKKKTRKLKI_					0	0	0		nc|ENSG00000139151|Q86YW0-2|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;ENSG00000139151|ENST00000266505|PLCZ1	nc|ENSG00000139151|Q86YW0-2|PLCZ1	nc|ENSG00000139151|Q86YW0-2|PLCZ1	MSMS	HCT116MG_D190212_S3	3	473.3294677734375	3	473.329168	1416.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.818	1	14.901	14.401	15.401	0.083271								0	0	0	0.96208	1	4801	4801		0	0	1				10782	3602	6224	6265	10411	10411					0.2738699615811129
FKKKRKKERK	10	Unmodified	_FKKKRKKERK_					0	0	0		ENST00000535284.1_1_16:57095655-57095901:+|nuORF	ENST00000535284.1_1_16:57095655-57095901:+|nuORF	ENST00000535284.1_1_16:57095655-57095901:+|nuORF	MSMS	HCT116MG_D190212_S4	4	688.4553833007812	2	688.454062	1374.89357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.346	1	60.08	59.58	60.58	-0.26582								0	0	0	0.96979	1	22735	22735		0.30703	0	1				10783	8660	6225	6266	10412	10412					0.22112081804402806
FKKQFLLLEN	10	Unmodified	_FKKQFLLLEN_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;EVC2|p.L1252Gfs*12|1|0.09|ENSG00000173040|chr4:5563020-5563021|AG/-|frameshift_variant;ENSG00000173040|ENST00000344408|EVC2;EVC2|p.Q581Pfs*3|1|0.3|ENSG00000173040|chr4:5628705-5628706|-/A|frameshift_variant	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MSMS	HCT116MG_D190212_S4	4	427.2515563964844	3	427.251813	1278.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.571	1	59.293	58.793	59.793	-0.27731								0	0	0	0.96836	1	22420	22420		0.62683	0	1				10784	5268	6226	6267	10413	10413					0.10539109016735893
FKLFFRDIIV	10	Unmodified	_FKLFFRDIIV_					0	0	0			REV__nc|ENSG00000088881|Q9BQW3-1|EBF4	REV__nc|ENSG00000088881|Q9BQW3-1|EBF4	MSMS	HCT116MG_D190212_S1	1	649.3467407226562	2	649.386991	1296.75943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.206	1	55.206	54.706	55.706	0								0	0	0	0.94339	1	21193	21193		6.2058	2.6093	1		+		10785	17086	6227	6268	10414	10414					0.12292003258971818
FKLLAKKNS	9	Unmodified	_FKLLAKKNS_					0	0	0			REV__ENST00000566581.5_1_15:34656208-34656274:-|nuORF	REV__ENST00000566581.5_1_15:34656208-34656274:-|nuORF	MSMS	HCT116MG_D190212_S1	1	524.8269653320312	2	524.829309	1047.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.037	1	53.037	52.537	53.537	0								0	0	0	0.76677	1	20301	20301		12.241	0.74595	1		+		10786	13543	6228	6269	10415	10415					0.12214899127980061
FKRFLIIFQ	9	Unmodified	_FKRFLIIFQ_					0	0	0		ENST00000463724.1_1_1:74648194-74648635:-|nuORF	ENST00000463724.1_1_1:74648194-74648635:-|nuORF	ENST00000463724.1_1_1:74648194-74648635:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	606.368896484375	2	606.368601	1210.72265	0.35571	0.00021569	1.1033	0.00066898	1.459	0.00088467	606.3692126344952	48.761	0.51458	48.761	48.46	48.974	0					18	9	2	0	0	0	0.74607	1	18598	18598		2.0598	0.40713	1	141900000			10787	8075	6229	6270	10416	10416					0.12571751433074496
FKRFLIIFQ	9	Unmodified	_FKRFLIIFQ_					0	0	0		ENST00000463724.1_1_1:74648194-74648635:-|nuORF	ENST00000463724.1_1_1:74648194-74648635:-|nuORF	ENST00000463724.1_1_1:74648194-74648635:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	606.368601	1210.72265	0.50803	0.00030805	1.6736	0.0010148	2.1816	0.0013229	606.3696178053136	49.355	1.5134	49.04	48.088	49.601	-0.31596	0.15313	1.2704E-05	NaN	2.0598	38	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36164000			10788	8075	6229	6270							0.12571751433074496
FKRSSMWLVM	10	Unmodified	_FKRSSMWLVM_					0	0	0			REV__ENST00000335508.10_1_2:198266746-198267288:-|nuORF	REV__ENST00000335508.10_1_2:198266746-198267288:-|nuORF	MSMS	HCT116MG_D190212_S2	2	428.8912048339844	3	428.891233	1283.65187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8356	1	8.5916	8.0916	9.0916	-0.24401								0	0	0	0.97045	1	2759	2759		0.15932	0	1		+		10789	14947	6230	6271	10417	10417					0.021389670615917566
FKRYYEMFI	9	Unmodified	_FKRYYEMFI_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MSMS	HCT116MG_D190212_S4	4	432.88531494140625	3	432.886365	1295.63727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.472	1	62.222	61.722	62.722	-0.24919								0	0	0	0.76995	1	23590	23590		1.0715	0.3738	1		+		10790	13452	6231	6272	10418	10418					0.0012721818509362492
FKSLIHLELI	10	Unmodified	_FKSLIHLELI_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|136|3|anti-sense;L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|188|1|anti-sense;L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|166|3|anti-sense;L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|175|1|anti-sense;L1PA3_dup1120|chr2:110351377-110353837:-|1.852683732690941|0.4358200479832063|2.09|470.0|84|1|anti-sense;L1PA3_dup1115|chr2:110017555-110020014:+|1.763195504976095|0.4680770941019235|1.91|454.0|154|3|anti-sense;chr15:53523322-53540662|232|17.27|0.17|6.68|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|10	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|136|3|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|136|3|anti-sense	MSMS	HCT116MG_D190212_S1	1	606.8712768554688	2	606.871174	1211.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.718	1	51.718	51.218	52.218	0								0	0	0	0.95648	1	19767	19767		3.2813	1.6287	1				10791	9288	6232	6273	10419	10419					0.13040010505051214
FKTFDWWQLRY	11	Unmodified	_FKTFDWWQLRY_					0	0	0			REV__nc|ENSG00000110497|Q9C0C7-5|AMBRA1	REV__nc|ENSG00000110497|Q9C0C7-5|AMBRA1	MSMS	HCT116MG_D190212_S3	3	795.4000854492188	2	795.398618	1588.78268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.295	1	21.314	20.814	21.814	0.018446								0	0	0	0.95731	1	7414	7414		2.4985	1.169	1		+		10792	17106	6233	6274	10420	10420					0.011843973056556933
FKTLKHAG	8	Unmodified	_FKTLKHAG_					0	0	0		ENST00000480503.5_1_7:45008844-45011824:-|nuORF	ENST00000480503.5_1_7:45008844-45011824:-|nuORF	ENST00000480503.5_1_7:45008844-45011824:-|nuORF	MSMS	HCT116MG_D190212_S1	1	451.2444152832031	2	451.266345	900.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.128	1	27.128	26.628	27.628	0								0	0	0	0.8837	1	9831	9831		13.906	0	1				10793	8244	6234	6275	10421	10421					0.06389812342570167
FKVADEAEKY	10	Unmodified	_FKVADEAEKY_					0	0	0		nc|ENSG00000160339|Q15485-2|FCN2;ENSG00000160339|ENST00000291744|FCN2;ENSG00000085265|ENST00000371806|FCN1	nc|ENSG00000160339|Q15485-2|FCN2	nc|ENSG00000160339|Q15485-2|FCN2	MULTI-SECPEP	HCT116MG_D190212_S1	1	400.25384521484375	3	400.536278	1198.587	-0.21939	-8.7872E-05	-1.1897	-0.00047651	-1.4091	-0.00056438	400.53567590262384	44.13	0.15895	44.13	44.036	44.195	0					4	2	2	0	0	0	0.31143	1	16696	16696		0.62683	0.39098	1	3587900			10794	1450	6235	6276	10422	10422					-0.004346129390569331
FKYAWMSING	10	Unmodified	_FKYAWMSING_					0	0	0		tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	609.1807250976562	2	608.794609	1215.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.915	1	37.822	37.322	38.322	-0.09301								0	0	0	0.94551	1	14228	14228		5.7319	0	1				10795	18609	6236	6277	10423	10423					-0.02449927883071723
FKYWNFTKD	9	Unmodified	_FKYWNFTKD_					0	0	0		ENST00000542507.5_2_1:29095522-29095663:+|nuORF	ENST00000542507.5_2_1:29095522-29095663:+|nuORF	ENST00000542507.5_2_1:29095522-29095663:+|nuORF	MSMS	HCT116MG_D190212_S3	3	624.8040771484375	2	624.806031	1247.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.708	1	31.437	30.937	31.937	-0.27028								0	0	0	0.7663	1	11594	11594		13.906	2.4113	1				10796	8698	6237	6278	10424	10424					-0.01638585493969913
FLADDLGGL	9	Unmodified	_FLADDLGGL_					0	0	0		ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19;ENST00000466409.1_1_9:95874378-95875386:+|nuORF	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	920.473876953125	1	920.472374	919.465098	0.84061	0.00077376	-0.091274	-8.4015E-05	0.74934	0.00068974	920.4722647765448	55.643	0.20733	55.457	55.327	55.535	-0.18565					5	3	2	0	0	0	0.0093514	1	21471	21471		114.94	36.959	1	71094000			10797	4756	6238	6279	10425	10425					0.002143897692462815
FLADPSAFVAA	11	Unmodified	_FLADPSAFVAA_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000089157|P05388-2|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MULTI-MSMS	HCT116MG_D190212_S2	2	1108.19873046875	1	1108.56734	1107.56006	0.59676	0.00066155	-0.55997	-0.00062076	0.036792	4.0787E-05	1108.5664901977705	54.314	0.205	54.125	53.996	54.201	-0.1894					5	3	2	0	0	0	0.038239	1	20927	20927		118.89	78.945	1	10024000			10798	1518	6239	6280	10426	10426					0.010583232404542287
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MSMS	HCT116MG_D190212_S2	2	546.7816772460938	2	546.782222	1091.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.611	1	51.427	50.927	51.927	-0.18369								0	0	0	0.34824	1	19806	19806		56.177	28.548	1				10799	6342	6240	6281	10427	10427					0.007777155151643456
FLAEEGFYKF	10	Unmodified	_FLAEEGFYKF_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A;STT3A|p.F106Sfs*45|2|0.41|ENSG00000134910|chr11:125602843-125602843|T/-|frameshift_variant	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	625.8084106445312	2	625.808239	1249.60193	0.51903	0.00032481	-0.12869	-8.0535E-05	0.39034	0.00024428	625.8080962251593	54.365	0.20459	54.176	54.048	54.252	-0.1894					6	3	2	0	0	0	0.055088	1	20942	20942		83.429	45.253	1	42487000			10800	3316	6241	6282	10428	10428					-0.012891210710677115
FLAEHPNVTL	10	Unmodified	_FLAEHPNVTL_					0	0	0		ENSG00000243811|ENST00000216099|APOBEC3D;ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	MULTI-MSMS	HCT116MG_D190212_S2	2	570.8058471679688	2	570.806031	1139.59751	0.42327	0.00024161	-0.25369	-0.00014481	0.16958	9.6795E-05	570.8059545813364	43.923	0.4114	43.845	43.607	44.019	-0.078373					12	7	3	0	0	0	0.017942	1	16676	16676		125.04	62.465	1	59973000			10801	6560	6242	6283	10429	10429					0.0332941450603812
FLAEHPNVTL	10	Unmodified	_FLAEHPNVTL_					0	0	0		ENSG00000243811|ENST00000216099|APOBEC3D;ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	MULTI-MATCH	HCT116MG_D190212_S3	3		2	570.806031	1139.59751	0.61746	0.00035245	0.53271	0.00030408	1.1502	0.00065653	570.8065149559136	44.197	0.20792	43.89	43.708	43.916	-0.30759	0.022403	0.00053635	NaN	125.04	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3758700			10802	6560	6242	6283							0.0332941450603812
FLALVEKFN	9	Unmodified	_FLALVEKFN_					0	0	0		nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-3|EFCAB6;nc|ENSG00000186976|Q5THR3-4|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	MSMS	HCT116MG_D190212_S2	2	541.0454711914062	2	540.808042	1079.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.723	1	48.579	48.079	49.079	-0.1437								0	0	0	0.74436	1	18624	18624		16.942	3.4344	1				10803	5921	6243	6284	10430	10430					0.06491503999768611
FLANVSTVL	9	Unmodified	_FLANVSTVL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	963.551513671875	1	963.550959	962.543683	0.82207	0.0007921	0.32982	0.0003178	1.1519	0.0011099	963.5509009698152	55.019	0.20367	55.019	54.892	55.095	0					6	3	2	0	0	0	0.035914	1	21125	21125		81.613	26.84	1	104540000		+	10804	545	6244	6285	10431	10431					0.06091242074330694
FLANVSTVL	9	Unmodified	_FLANVSTVL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	963.5516357421875	1	963.550959	962.543683	0.61864	0.00059609	0.23472	0.00022616	0.85335	0.00082225	963.5509916338536	55.232	0.35535	55.044	54.867	55.222	-0.18797					16	6	4	0	0	0	0.035914	1	21287	21287		81.613	22.934	1	551370000		+	10805	545	6244	6285	10432	10432					0.06091242074330694
FLANVSTVL	9	Unmodified	_FLANVSTVL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	482.27911376953125	2	482.279118	962.543683	0.17507	8.4432E-05	0.29437	0.00014197	0.46944	0.0002264	482.2790765525835	55.182	0.20299	54.994	54.918	55.121	-0.18797					7	3	3	0	0	0	0.013464	1	21292	21292		104.8	46.12	1	52703000		+	10806	545	6244	6285	10433	10433					0.06091242074330694
FLANVSTVL	9	Unmodified	_FLANVSTVL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S3	3	963.551513671875	1	963.550959	962.543683	0.6732	0.00064866	0.15799	0.00015223	0.83118	0.00080089	963.5508609896654	55.349	0.26127	55.057	54.927	55.188	-0.2918					8	4	2	0	0	0	0.043314	1	21015	21015		77.984	29.638	1	6500200		+	10807	545	6244	6285	10434	10434					0.06091242074330694
FLASESLIKQI	11	Unmodified	_FLASESLIKQI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S2	2	624.8638916015625	2	624.863546	1247.71254	0.72522	0.00045317	-0.30135	-0.0001883	0.42387	0.00026486	624.8635054507796	52.251	0.20721	52.064	51.935	52.142	-0.18725					8	3	3	0	0	0	3.2899E-10	1	20093	20093		205.91	132.94	1	36158000			10808	6266	6245	6286	10435	10435					0.09859098917195297
FLASESLIKQI	11	Unmodified	_FLASESLIKQI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	HCT116MG_D190212_S1	1		2	624.863546	1247.71254	0.63797	0.00039865	0.44666	0.0002791	1.0846	0.00067775	624.8640545543826	52.047	0.15741	52.047	51.916	52.073	0	-0.0085002	0.00072093	NaN	205.91	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8091900			10809	6266	6245	6286							0.09859098917195297
FLCTALGP	8	Unmodified	_FLCTALGP_					0	0	0		ENST00000487031.5_1_3:186666587-186666722:+|nuORF	ENST00000487031.5_1_3:186666587-186666722:+|nuORF	ENST00000487031.5_1_3:186666587-186666722:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	411.21429443359375	2	411.214932	820.415311	-0.14062	-5.7824E-05	-0.18916	-7.7786E-05	-0.32978	-0.00013561	411.21476945273855	42.977	0.36489	42.977	42.743	43.108	0					9	6	2	0	0	0	0.47906	1	16242	16242		42.968	0	1	13050000			10810	8300	6246	6287	10436	10436					-0.0020801644041057443
FLDASGAKLDY	11	Unmodified	_FLDASGAKLDY_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MSMS	HCT116MG_D190212_S1	1	600.3005981445312	2	600.300778	1198.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.896	1	42.896	42.396	43.396	0								0	0	0	0.0011199	1	16191	16191		99.864	50.31	1				10811	9390	6247	6288	10437	10437					-0.004346129390341957
FLDASGAKLDY	11	Unmodified	_FLDASGAKLDY_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S2	2	600.3011474609375	2	600.300778	1198.587	0.71975	0.00043207	0.28208	0.00016934	1.0018	0.0006014	600.3007216329461	42.888	0.41112	42.818	42.637	43.049	-0.069984					17	7	4	0	0	0	0.0032285	1	16249	16249		146.48	94.852	1	152200000			10812	9390	6247	6288	10438	10438					-0.004346129390341957
FLDASGAKLDY	11	Unmodified	_FLDASGAKLDY_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S3	3	600.3005981445312	2	600.300778	1198.587	0.6493	0.00038978	-0.26928	-0.00016165	0.38002	0.00022812	600.3001830699941	43.121	0.32663	42.816	42.706	43.033	-0.30472					20	11	3	0	0	0	0.69138	1	16078	16078		24.991	11.948	1	30036000			10813	9390	6247	6288	10439	10439					-0.004346129390341957
FLDDFESKY	9	Unmodified	_FLDDFESKY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MULTI-MSMS	HCT116MG_D190212_S1	1	582.2667236328125	2	582.266404	1162.51826	0.66909	0.00038959	0.023064	1.3429E-05	0.69215	0.00040302	582.7679986062875	46.001	0.26087	46.001	45.818	46.079	0					9	4	3	0	0	0	0.026999	1	17450	17450		89.401	51.427	1	17536000			10814	5195	6248	6289	10440	10440					-0.05650277238760282
FLDDFESKY	9	Unmodified	_FLDDFESKY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MULTI-MSMS	HCT116MG_D190212_S2	2	582.2669067382812	2	582.266404	1162.51826	0.48812	0.00028422	0.25725	0.00014979	0.74538	0.00043401	582.266474210235	46.014	0.35878	45.913	45.71	46.068	-0.1014					16	6	3	0	0	0	0.0035183	1	17507	17507		157.8	75.905	1	98242000			10815	5195	6248	6289	10441	10441					-0.05650277238760282
FLDDFESKY	9	Unmodified	_FLDDFESKY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MSMS	HCT116MG_D190212_S4	4	582.26708984375	2	582.266404	1162.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.379	1	46.007	45.507	46.507	-0.37134								0	0	0	0.5054	1	17122	17122		28.495	10.36	1				10816	5195	6248	6289	10442	10442					-0.05650277238760282
FLDDGHTFNY	10	Unmodified	_FLDDGHTFNY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	HCT116MG_D190212_S1	1	614.76708984375	2	614.767103	1227.51965	0.37775	0.00023223	0.095302	5.8589E-05	0.47305	0.00029081	614.7669885497999	44.437	0.26491	44.437	44.304	44.568	0					14	4	4	0	0	0	0.0045823	1	16813	16813		168.54	126.7	1	48888000			10817	1529	6249	6290	10443	10443					-0.08500643149977805
FLDDGHTFNY	10	Unmodified	_FLDDGHTFNY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	HCT116MG_D190212_S2	2	614.7672729492188	2	614.767103	1227.51965	0.49585	0.00030483	0.25905	0.00015926	0.7549	0.00046409	614.7671881038447	44.487	0.4194	44.402	44.22	44.639	-0.084797					20	7	4	0	0	0	0.0015699	1	16888	16888		176.43	136.48	1	273150000			10818	1529	6249	6290	10444	10444					-0.08500643149977805
FLDDGHTFNY	10	Unmodified	_FLDDGHTFNY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MSMS	HCT116MG_D190212_S3	3	614.7667846679688	2	614.767103	1227.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.679	1	44.371	43.871	44.871	-0.30824								0	0	0	0.001228	1	16708	16708		140.63	96.775	1				10819	1529	6249	6290	10445	10445					-0.08500643149977805
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant;ENSG00000129317|ENST00000344862|PUS7L	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	566.2877807617188	2	566.287671	1130.56079	0.57026	0.00032293	-0.51472	-0.00029148	0.055546	3.1455E-05	566.2872677547357	33.011	0.20187	33.011	32.887	33.089	0					5	3	2	0	0	0	0.016412	1	12213	12213		100.09	50.158	1	12689000			10820	3029	6250	6291	10446	10446					0.0007311788947390596
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant;ENSG00000129317|ENST00000344862|PUS7L	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	566.2877807617188	2	566.287671	1130.56079	0.7358	0.00041667	0.25444	0.00014408	0.99023	0.00056076	566.2876685246382	33.238	0.51804	33.045	32.758	33.276	-0.19297					14	9	3	0	0	0	0.011034	1	12327	12327		110.79	45.558	1	96294000			10821	3029	6250	6291	10447	10447					0.0007311788947390596
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant;ENSG00000129317|ENST00000344862|PUS7L	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	377.86065673828125	3	377.860873	1130.56079	0.12509	4.7265E-05	0.0067823	2.5628E-06	0.13187	4.9828E-05	377.8607554479253	33.222	0.25958	33.023	32.909	33.168	-0.1986					7	4	2	0	0	0	0.16306	1	12330	12330		42.312	23.591	1	28655000			10822	3029	6250	6291	10448	10448					0.0007311788947390596
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant;ENSG00000129317|ENST00000344862|PUS7L	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	566.2882080078125	2	566.287671	1130.56079	0.51419	0.00029118	-0.017253	-9.7701E-06	0.49693	0.00028141	566.2876595007749	33.36	0.22046	33.07	32.98	33.2	-0.29013					8	4	2	0	0	0	0.0158	1	12247	12247		100.71	50.776	1	12882000			10823	3029	6250	6291	10449	10449					0.0007311788947390596
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant;ENSG00000129317|ENST00000344862|PUS7L	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	377.8609924316406	3	377.860873	1130.56079	0.010366	3.917E-06	0.50944	0.0001925	0.51981	0.00019641	377.8609195066291	33.389	0.18874	33.099	33.011	33.2	-0.29013					6	3	2	0	0	0	0.51301	1	12279	12279		15.739	5.5881	1	3280600			10824	3029	6250	6291	10450	10450					0.0007311788947390596
FLDEKTHEL	9	Unmodified	_FLDEKTHEL_					0	0	0		PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant;ENSG00000129317|ENST00000344862|PUS7L	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	PUS7L|p.K220*|1|0.31|ENSG00000129317|chr12:43754588-43754589|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	566.2880249023438	2	566.287671	1130.56079	0.70224	0.00039767	-0.25412	-0.0001439	0.44812	0.00025376	566.2876418990121	33.488	0.17315	33.106	32.998	33.171	-0.38223					7	4	2	0	0	0	0.12421	1	12201	12201		53.404	20.618	1	6394800			10825	3029	6250	6291	10451	10451					0.0007311788947390596
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	nc|ENSG00000285292|Q9UG63-2|ABCF2	nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-MSMS	HCT116MG_D190212_S1	1	543.2671508789062	2	543.266739	1084.51892	0.32152	0.00017467	0.63462	0.00034477	0.95614	0.00051944	543.2669957905738	39.735	0.31185	39.735	39.605	39.917	0					7	5	2	0	0	0	0.016701	1	14943	14943		99.799	57.704	1	10501000			10826	973	6251	6292	10452	10452					-0.019954377990416106
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	nc|ENSG00000285292|Q9UG63-2|ABCF2	nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-MSMS	HCT116MG_D190212_S2	2	543.266845703125	2	543.266739	1084.51892	0.29677	0.00016123	0.020369	1.1066E-05	0.31714	0.00017229	543.2668998038257	39.763	0.36036	39.688	39.48	39.84	-0.075058					9	6	2	0	0	0	0.012496	1	14994	14994		107.19	56.332	1	24245000			10827	973	6251	6292	10453	10453					-0.019954377990416106
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	HCT116MG_D190212_S1	1	623.291015625	2	623.290942	1244.56733	0.60526	0.00037726	-0.018675	-1.164E-05	0.58659	0.00036561	623.2908057022271	32.56	0.41714	32.56	32.274	32.691	0					17	7	3	0	0	0	0.0011309	1	12013	12013		177.58	125.31	1	74043000			10828	5705	6252	6293	10454	10454					-0.045169889497856275
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	HCT116MG_D190212_S2	2	623.2914428710938	2	623.290942	1244.56733	0.56485	0.00035207	-0.031885	-1.9874E-05	0.53297	0.0003322	623.2909413954566	32.771	0.3618	32.56	32.377	32.739	-0.21135					19	6	4	0	0	0	0.0069584	1	12119	12119		162.31	100.96	1	576250000			10829	5705	6252	6293	10455	10455					-0.045169889497856275
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	HCT116MG_D190212_S2	2	1245.575439453125	1	1245.57461	1244.56733	0.62745	0.00078153	-0.13551	-0.00016878	0.49194	0.00061275	1245.5743690652228	32.767	0.25868	32.555	32.43	32.688	-0.21135					9	4	3	0	0	0	0.00010848	1	12152	12152		195.04	153.08	1	34649000			10830	5705	6252	6293	10456	10456					-0.045169889497856275
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	HCT116MG_D190212_S3	3	623.29150390625	2	623.290942	1244.56733	0.64348	0.00040107	0.23817	0.00014845	0.88165	0.00054952	623.2911312662227	32.925	0.35946	32.64	32.456	32.815	-0.2851					35	14	4	0	0	0	0.0057099	2	12069	12069;12098		165.58	113.32	1	154530000			10831	5705	6252	6293	10457;10458	10457					-0.045169889497856275
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	HCT116MG_D190212_S4	4	623.291259765625	2	623.290942	1244.56733	0.45825	0.00028563	0.65619	0.000409	1.1144	0.00069463	623.291284997411	32.99	0.2471	32.608	32.465	32.712	-0.38223					24	12	3	0	0	0	0.0069584	1	12034	12034		162.31	110.05	1	51215000			10832	5705	6252	6293	10459	10459					-0.045169889497856275
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	HCT116MG_D190212_S2	2	1039.478515625	1	1039.47647	1038.4692	0.61838	0.0006428	0.17713	0.00018412	0.79551	0.00082691	1039.4770242327127	53.024	0.25924	52.835	52.706	52.966	-0.18922					6	4	2	0	0	0	0.12994	1	20410	20410		52.268	21.632	1	7464300			10833	5076	6253	6294	10460	10460					-0.04849888799344626
FLDKSGLQGY	10	Unmodified	_FLDKSGLQGY_					0	0	0		PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2901611328125	2	564.290214	1126.56587	0.48138	0.00027164	-0.894	-0.00050448	-0.41262	-0.00023284	564.2898448406561	38.963	0.30999	38.878	38.702	39.012	-0.084621					12	5	3	0	0	0	0.014951	1	14655	14655		132.13	64.054	1	60065000			10834	1291	6254	6295	10461	10461					0.007654217521121609
FLDKSGLQGY	10	Unmodified	_FLDKSGLQGY_					0	0	0		PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2902221679688	2	564.290214	1126.56587	0.41664	0.00023511	-0.32668	-0.00018434	0.089965	5.0766E-05	564.2900337436539	39.199	0.26279	38.898	38.716	38.979	-0.30137					7	4	2	0	0	0	0.112	1	14571	14571		71.708	26.008	1	10239000			10835	1291	6254	6295	10462	10462					0.007654217521121609
FLDKSGLQGY	10	Unmodified	_FLDKSGLQGY_					0	0	0		PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	564.2901611328125	2	564.290214	1126.56587	0.35589	0.00020082	-0.20058	-0.00011319	0.1553	8.7636E-05	564.2900506576486	39.304	0.19978	38.923	38.815	39.015	-0.38055					7	4	2	0	0	0	0.18147	1	14441	14441		61.09	17.232	1	1756500			10836	1291	6254	6295	10463	10463					0.007654217521121609
FLDKSGLQGY	10	Unmodified	_FLDKSGLQGY_					0	0	0		PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	564.290214	1126.56587	0.10676	6.0242E-05	-1.4138	-0.00079782	-1.3071	-0.00073758	564.2892990149575	38.966	0.1556	38.966	38.851	39.007	0	0.049777	-0.0011874	NaN	132.13	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6590400			10837	1291	6254	6295							0.007654217521121609
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	HCT116MG_D190212_S1	1	579.7808837890625	2	579.780544	1157.54654	0.67382	0.00039067	-0.11528	-6.6836E-05	0.55854	0.00032383	580.2820182129647	28.19	0.26	28.19	28.008	28.268	0					10	4	3	0	0	0	0.01206	1	10267	10267		128.93	58.6	1	12981000			10838	2791	6255	6296	10464	10464					-0.025935345388234055
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	HCT116MG_D190212_S2	2	579.7805786132812	2	579.780544	1157.54654	0.41128	0.00023845	-0.11057	-6.4107E-05	0.30071	0.00017435	579.7802104409018	28.569	0.30751	28.239	28.081	28.389	-0.32987					11	5	3	0	0	0	0.0035391	1	10437	10437		184.36	94.955	1	89264000			10839	2791	6255	6296	10465	10465					-0.025935345388234055
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	HCT116MG_D190212_S3	3	579.7811279296875	2	579.780544	1157.54654	0.57384	0.0003327	0.21618	0.00012534	0.79003	0.00045804	579.7803943381818	28.513	0.52172	28.307	27.916	28.437	-0.20593					16	9	3	0	0	0	0.069943	1	10319	10319		79.596	51.968	1	37797000			10840	2791	6255	6296	10466	10466					-0.025935345388234055
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	HCT116MG_D190212_S3	3	386.85601806640625	3	386.856122	1157.54654	0.069764	2.6989E-05	-0.24689	-9.551E-05	-0.17712	-6.8521E-05	386.8559728268662	28.545	0.26049	28.339	28.177	28.437	-0.20593					7	4	2	0	0	0	0.10554	1	10346	10346		57.108	34.45	1	11411000			10841	2791	6255	6296	10467	10467					-0.025935345388234055
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	HCT116MG_D190212_S4	4	579.7805786132812	2	579.780544	1157.54654	0.23259	0.00013485	0.29737	0.00017241	0.52995	0.00030726	579.780542382822	28.733	0.51954	28.392	27.951	28.47	-0.34059					15	9	2	0	0	0	0.46804	1	10297	10297		14.405	5.0223	1	13558000			10842	2791	6255	6296	10468	10468					-0.025935345388234055
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	HCT116MG_D190212_S4	4	386.8556823730469	3	386.856122	1157.54654	0.029465	1.1399E-05	-0.16586	-6.4163E-05	-0.13639	-5.2765E-05	386.8559159965403	28.733	0.25928	28.392	28.211	28.47	-0.34059					7	4	2	0	0	0	0.2464	1	10357	10357		36.395	21.99	1	8408300			10843	2791	6255	6296	10469	10469					-0.025935345388234055
FLDNERHEV	9	Unmodified	_FLDNERHEV_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MATCH	HCT116MG_D190212_S1	1		3	386.856122	1157.54654	0.04282	1.6565E-05	0.24723	9.5641E-05	0.29005	0.00011221	386.8562523237116	28.19	0.15578	28.19	28.06	28.216	0	-0.11704	0.00029629	NaN	57.108	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7745200			10844	2791	6255	6296							-0.025935345388234055
FLDQNLQKY	9	Unmodified	_FLDQNLQKY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S2	2	584.8037109375	2	584.803488	1167.59242	0.52428	0.0003066	-0.25804	-0.0001509	0.26624	0.0001557	584.8032066129825	38.916	0.25859	38.831	38.702	38.961	-0.084618					9	4	3	0	0	0	0.0035631	1	14636	14636		173.69	111.11	1	44081000			10845	1620	6256	6297	10470	10470					0.01533110643413238
FLDQNLQKY	9	Unmodified	_FLDQNLQKY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S3	3	584.8033447265625	2	584.803488	1167.59242	0.45933	0.00026862	0.078249	4.576E-05	0.53758	0.00031438	584.8034367574538	39.163	0.26279	38.862	38.716	38.979	-0.30137					9	4	3	0	0	0	9.7949E-05	1	14540	14540		199.75	121.02	1	13398000			10846	1620	6256	6297	10471	10471					0.01533110643413238
FLDQNLQKY	9	Unmodified	_FLDQNLQKY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S4	4	585.3056030273438	2	584.803488	1167.59242	0.40252	0.0002354	0.39425	0.00023056	0.79677	0.00046596	584.8036181819672	39.283	0.28342	38.902	38.731	39.015	-0.38055					9	6	2	0	0	0	0.0080847	2	14440	14440;14451		118.07	66.439	1	4676600			10847	1620	6256	6297	10472;10473	10472					0.01533110643413238
FLDSEVSEL	9	Unmodified	_FLDSEVSEL_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	HCT116MG_D190212_S1	1	519.7531127929688	2	519.75313	1037.49171	0.17622	9.1591E-05	-0.48597	-0.00025258	-0.30975	-0.00016099	519.7527512622787	50.612	0.25805	50.612	50.472	50.73	0					7	4	2	0	0	0	0.065014	1	19337	19337		67.344	16.489	1	14913000			10848	2220	6257	6298	10474	10474					-0.025539661300854277
FLDSEVSEL	9	Unmodified	_FLDSEVSEL_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MSMS	HCT116MG_D190212_S2	2	519.7530517578125	2	519.75313	1037.49171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.845	1	50.669	50.169	51.169	-0.17686								0	0	0	0.01641	1	19495	19495		97.075	25.941	1				10849	2220	6257	6298	10475	10475					-0.025539661300854277
FLDSEVSEL	9	Unmodified	_FLDSEVSEL_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	HCT116MG_D190212_S4	4	520.254638671875	2	519.75313	1037.49171	0.2589	0.00013456	0.05928	3.0811E-05	0.31818	0.00016537	519.753142007556	51.058	0.26027	50.703	50.573	50.833	-0.35483					7	4	2	0	0	0	0.24973	2	18997	18997;19013		36.044	7.5574	1	8766000			10850	2220	6257	6298	10476;10477	10476					-0.025539661300854277
FLDSTGSRLDY	11	Unmodified	_FLDSTGSRLDY_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	HCT116MG_D190212_S1	1	637.3062133789062	2	637.306592	1272.59863	0.40906	0.0002607	0.15098	9.6219E-05	0.56004	0.00035692	637.3068386546078	40.855	0.3056	40.855	40.64	40.946	0					8	5	2	0	0	0	0.077066	1	15364	15364		93.448	51.493	1	26912000			10851	3406	6258	6299	10478	10478					-0.026764159156982714
FLDSTGSRLDY	11	Unmodified	_FLDSTGSRLDY_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	HCT116MG_D190212_S2	2	637.30712890625	2	637.306592	1272.59863	0.60367	0.00038472	0.48678	0.00031023	1.0904	0.00069495	637.3066923666801	40.823	0.36207	40.753	40.622	40.984	-0.069626					20	6	4	0	0	0	0.035039	1	15427	15427		112.04	69.729	1	200140000			10852	3406	6258	6299	10479	10479					-0.026764159156982714
FLDSTGSRLDY	11	Unmodified	_FLDSTGSRLDY_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	HCT116MG_D190212_S3	3	637.3073120117188	2	637.306592	1272.59863	0.61964	0.0003949	-0.52593	-0.00033518	0.093712	5.9723E-05	637.3066520695609	41.064	0.67812	40.762	40.319	40.997	-0.30185					23	12	4	0	0	0	0.031913	2	15271	15217;15271		105.35	55.791	1	35588000			10853	3406	6258	6299	10480;10481	10481					-0.026764159156982714
FLDTESCC	8	Unmodified	_FLDTESCC_					0	0	0			REV__ENST00000224652.10_3_10:123503115-123503274:-|nuORF	REV__ENST00000224652.10_3_10:123503115-123503274:-|nuORF	MSMS	HCT116MG_D190212_S2	2	459.1717224121094	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.5606	1	6.3633	5.8633	6.8633	-0.19725								0	0	0	0.8837	1	2067	2067		0.69038	0	1		+		10854	14530	6259	6300	10482	10482					-0.13085755039321612
FLDVSGFS	8	Unmodified	_FLDVSGFS_					0	0	0		GORASP1|p.I313F|1|0.43|ENSG00000114745|chr3:39098873-39098873|T/A|missense_variant	GORASP1|p.I313F|1|0.43|ENSG00000114745|chr3:39098873-39098873|T/A|missense_variant	GORASP1|p.I313F|1|0.43|ENSG00000114745|chr3:39098873-39098873|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	871.4215698242188	1	871.41961	870.412334	0.91474	0.00079713	0.011055	9.6337E-06	0.9258	0.00080676	871.4194990824716	52.645	0.26154	52.339	52.247	52.509	-0.3064					7	4	2	0	0	0	0.53394	1	19928	19928		38.151	0	1	3564800			10855	9185	6260	6301	10483	10483					-0.02805568293547367
FLDYLTSKIKR	11	Unmodified	_FLDYLTSKIKR_					0	0	0		XPO6|p.S434R|1|0.32|ENSG00000169180|chr16:28146128-28146128|T/G|missense_variant	XPO6|p.S434R|1|0.32|ENSG00000169180|chr16:28146128-28146128|T/G|missense_variant	XPO6|p.S434R|1|0.32|ENSG00000169180|chr16:28146128-28146128|T/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	692.0595703125	2	692.403369	1382.79219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.051	1	50.696	50.196	51.196	-0.35483								0	0	0	0.95581	1	18988	18988		3.2813	0.28607	1				10856	18702	6261	6302	10484	10484					0.1161016559115069
FLEHQLEKA	9	Unmodified	_FLEHQLEKA_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	HCT116MG_D190212_S4	4	372.2010192871094	3	372.201229	1113.58186	-0.058713	-2.1853E-05	-0.060711	-2.2597E-05	-0.11942	-4.445E-05	372.2011770290349	34.722	0.25375	34.336	34.237	34.491	-0.38579					6	4	2	0	0	0	0.60612	1	12713	12713		7.1017	1.3183	1	2805600	+		10857	11630	6262	6303	10485	10485					0.029611279890104925
FLEKESAIV	9	Unmodified	_FLEKESAIV_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000596477.1_1_19:50059010-50060533:-|nuORF;NOSIP|p.R112W|1|0.21|ENSG00000142546|chr19:49557174-49557174|G/A|missense_variant	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2901000976562	2	518.289682	1034.56481	0.24439	0.00012666	0.25026	0.00012971	0.49464	0.00025637	518.289865723332	39.58	0.30291	39.502	39.379	39.682	-0.077835					7	5	2	0	0	0	0.0201	1	14908	14908		96.367	25.233	1	41490000			10858	3763	6263	6304	10486	10486					0.048912073831616
FLEKESAIV	9	Unmodified	_FLEKESAIV_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000596477.1_1_19:50059010-50060533:-|nuORF;NOSIP|p.R112W|1|0.21|ENSG00000142546|chr19:49557174-49557174|G/A|missense_variant	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MSMS	HCT116MG_D190212_S3	3	518.2897338867188	2	518.289682	1034.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.855	1	39.553	39.053	40.053	-0.30137								0	0	0	0.094105	1	14782	14782		57.722	5.4536	1				10859	3763	6263	6304	10487	10487					0.048912073831616
FLELIKNKVK	10	Unmodified	_FLELIKNKVK_					0	0	0			REV__GGA1|p.L119F|1|0.25|ENSG00000100083|chr22:37620289-37620289|C/T|missense_variant	REV__GGA1|p.L119F|1|0.25|ENSG00000100083|chr22:37620289-37620289|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	616.3927001953125	2	616.392273	1230.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.694	1	17.694	17.194	18.194	0								0	0	0	0.95648	1	6038	6038		3.2813	0.99853	1		+		10860	16848	6264	6305	10488	10488					0.16383985913421384
FLFATKATVE	10	Unmodified	_FLFATKATVE_					0	0	0			REV__TRAM2|p.A272Vfs*83|1|0.3|ENSG00000065308|chr6:52505659-52505659|G/-|frameshift_variant	REV__TRAM2|p.A272Vfs*83|1|0.3|ENSG00000065308|chr6:52505659-52505659|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	563.8291625976562	2	563.810782	1125.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.401	1	50.086	49.586	50.586	-0.31525								0	0	0	0.93576	1	19005	19005		7.9102	0.62092	1		+		10861	10697	6265	6306	10489	10489					0.04923182791549152
FLFEDFSKA	9	Unmodified	_FLFEDFSKA_					0	0	0		ENSG00000109084|ENST00000226230|TMEM97	ENSG00000109084|ENST00000226230|TMEM97	ENSG00000109084|ENST00000226230|TMEM97	MULTI-MSMS	HCT116MG_D190212_S2	2	552.273681640625	2	552.274032	1102.53351	0.36241	0.00020015	0.4673	0.00025808	0.82972	0.00045823	552.2741492948004	54.671	0.30635	54.481	54.252	54.559	-0.1894					9	5	3	0	0	0	0.11363	1	21073	21073		55.503	15.545	1	107550000			10862	2193	6266	6307	10490	10490					-0.013653656509177381
FLFFALLILGW	11	Unmodified	_FLFFALLILGW_					0	0	0		ENST00000374580.8_1_2:203242016-203329562:+|nuORF	ENST00000374580.8_1_2:203242016-203329562:+|nuORF	ENST00000374580.8_1_2:203242016-203329562:+|nuORF	MSMS	HCT116MG_D190212_S2	2	670.3948364257812	2	670.394285	1338.77402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.78	1	51.597	51.097	52.097	-0.18369								0	0	0	0.95521	1	19876	19876		3.5965	0	1				10863	7499	6267	6308	10491	10491					0.118180754071318
FLFFYRLYYWC	11	Unmodified	_FLFFYRLYYWC_					0	0	0			REV__ENSG00000130300|ENST00000252590|PLVAP	REV__ENSG00000130300|ENST00000252590|PLVAP	MSMS	HCT116MG_D190212_S2	2	540.8863525390625	3	540.928453	1619.76353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.635	1	50.463	49.963	50.963	-0.1719								0	0	0	0.9593	1	19409	19409		1.4551	1.3603	1		+		10864	11913	6268	6309	10492	10492					-0.02156275309607736
FLFGEEPSKL	10	Unmodified	_FLFGEEPSKL_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	HCT116MG_D190212_S2	2	584.3102416992188	2	583.808239	1165.60193	0.7423	0.00043336	0.19274	0.00011252	0.93504	0.00054588	583.8084397366366	52.154	0.36187	51.967	51.728	52.09	-0.18726					9	6	2	0	0	0	0.079802	1	20040	20040		78.06	28.127	1	12564000			10865	5440	6269	6310	10493	10493					0.025748789289536944
FLFMLFLF	8	Unmodified	_FLFMLFLF_					0	0	0			REV__ENSG00000255713|ENST00000545221|OR4D2	REV__ENSG00000255713|ENST00000545221|OR4D2	MSMS	HCT116MG_D190212_S2	2	539.2950439453125	2	539.295725	1076.5769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.937	1	55.751	55.251	56.251	-0.18565								0	0	0	0.8837	1	21573	21573		6.3541	1.5981	1		+		10866	14397	6270	6311	10494	10494					0.04167152592663115
FLGDDVFLREL	11	Unmodified	_FLGDDVFLREL_					0	0	0		PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	662.3516235351562	2	662.350803	1322.68705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.197	1	57.197	56.697	57.697	0								0	0	0	0.89318	1	22005	22005		20.871	11.488	1				10867	1715	6271	6312	10495	10495					0.03861624394744467
FLGDDVFLREL	11	Unmodified	_FLGDDVFLREL_					0	0	0		PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	662.35107421875	2	662.350803	1322.68705	0.53136	0.00035195	-0.10567	-6.9988E-05	0.4257	0.00028196	662.3507101904939	57.308	0.15546	57.129	57.051	57.207	-0.17904					6	2	3	0	0	0	0.077066	1	22148	22148		93.448	59.047	1	21893000			10868	1715	6271	6312	10496	10496					0.03861624394744467
FLGDDVFLREL	11	Unmodified	_FLGDDVFLREL_					0	0	0		PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	662.350803	1322.68705	0.67525	0.00044725	0.56757	0.00037593	1.2428	0.00082318	662.3510494178009	57.126	0.15479	57.126	56.997	57.152	0	-0.0013408	0.00074853	NaN	93.448	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17315000			10869	1715	6271	6312							0.03861624394744467
FLGEFATDI	9	Unmodified	_FLGEFATDI_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	1012.5866088867188	1	1012.49859	1011.49131	0.77012	0.00077975	1.5516	0.001571	2.3217	0.0023508	1012.4999250857295	56.176	0.30936	55.994	55.898	56.207	-0.18261					6	5	2	0	0	0	0.10596	1	21754	21754		34.102	13.649	1	8101100			10870	1932	6272	6313	10497	10497					-0.01397341059282553
FLGEKIASV	9	Unmodified	_FLGEKIASV_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	HCT116MG_D190212_S2	2	482.2789611816406	2	482.279118	962.543683	0.16525	7.9696E-05	0.41733	0.00020127	0.58258	0.00028096	482.27908217612617	42.324	0.31083	42.256	42.12	42.431	-0.068455					8	5	3	0	0	0	0.05892	1	16045	16045		70.332	15.558	1	10590000			10871	4107	6273	6314	10498	10498					0.06091242074330694
FLGEKIASV	9	Unmodified	_FLGEKIASV_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	HCT116MG_D190212_S3	3	482.2790222167969	2	482.279118	962.543683	0.27405	0.00013217	-0.28393	-0.00013693	-0.0098852	-4.7674E-06	482.27897461259516	42.59	0.20853	42.286	42.196	42.405	-0.30352					5	3	2	0	0	0	0.35842	1	15900	15900		24.991	0.97039	1	3459200			10872	4107	6273	6314	10499	10499					0.06091242074330694
FLGEKYIRRV	10	Unmodified	_FLGEKYIRRV_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000561773.1_1_15:66671752-66672088:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	426.8861083984375	3	427.587307	1279.74009	0.086014	3.6779E-05	-0.14962	-6.3976E-05	-0.063607	-2.7198E-05	427.58731190555835	36.794	0.2064	36.679	36.55	36.757	-0.11478					6	3	2	0	0	0	0.30126	1	13754	13754		19.626	11.681	1	17293000			10873	4621	6274	6315	10500	10500					0.11141046968032242
FLGGGVEAQ	9	Unmodified	_FLGGGVEAQ_					0	0	0			REV__ENST00000506641.5_1_5:1318486-1326363:-|nuORF	REV__ENST00000506641.5_1_5:1318486-1326363:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	877.4414672851562	1	877.441409	876.434132	0.96517	0.00084688	-0.36586	-0.00032102	0.59931	0.00052586	877.4410500592859	47.193	0.251	46.822	46.693	46.944	-0.37038					6	4	2	0	0	0	0.10839	1	17476	17476		56.541	5.6862	1	6929500	+		10874	16150	6275	6316	10501	10501					-0.009027635450024718
FLGPWPAAS	9	Unmodified	_FLGPWPAAS_					0	0	0		ENST00000509198.1_1_4:3521942-3534139:-|nuORF;ENSG00000163956|ENST00000650182|LRPAP1	ENST00000509198.1_1_4:3521942-3534139:-|nuORF	ENST00000509198.1_1_4:3521942-3534139:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	945.4830322265625	1	945.482879	944.475603	0.63155	0.00059712	-0.0017552	-1.6595E-06	0.6298	0.00059546	945.4826073318831	54.16	0.36017	53.971	53.739	54.099	-0.1894					12	6	3	0	0	0	0.023611	1	20831	20831		92.822	52.374	1	24917000			10875	4655	6276	6317	10502	10502					0.0011441721431992846
FLGTYVQLRR	10	Unmodified	_FLGTYVQLRR_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1;nc|ENSG00000197177|Q86SQ6-2|ADGRA1;ADGRA1|p.S458Afs*79|1|0.09|ENSG00000197177|chr10:133129193-133129193|C/-|frameshift_variant;ADGRA1|p.R449Afs*88|1|0.36|ENSG00000197177|chr10:133129169-133129169|C/-|frameshift_variant;ENSG00000197177|ENST00000392607|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	HCT116MG_D190212_S1	1	626.8611450195312	2	626.861672	1251.70879	0.63112	0.00039562	-1.2491	-0.00078304	-0.61803	-0.00038742	626.8607595720678	47.522	0.19997	47.522	47.395	47.595	0					11	3	4	0	0	0	0.58749	1	18066	18066		29.082	2.8134	1	26545000			10876	9598	6277	6318	10503	10503					0.09300473933967623
FLGTYVQLRR	10	Unmodified	_FLGTYVQLRR_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1;nc|ENSG00000197177|Q86SQ6-2|ADGRA1;ADGRA1|p.S458Afs*79|1|0.09|ENSG00000197177|chr10:133129193-133129193|C/-|frameshift_variant;ADGRA1|p.R449Afs*88|1|0.36|ENSG00000197177|chr10:133129169-133129169|C/-|frameshift_variant;ENSG00000197177|ENST00000392607|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	HCT116MG_D190212_S4	4	626.8616333007812	2	626.861672	1251.70879	0.38109	0.00023889	-0.6168	-0.00038665	-0.23571	-0.00014775	626.8612778078027	47.88	0.43687	47.511	47.341	47.778	-0.36907					13	8	2	0	0	0	0.58749	1	17711	17711		29.082	2.8134	1	15118000			10877	9598	6277	6318	10504	10504					0.09300473933967623
FLGTYVQLRR	10	Unmodified	_FLGTYVQLRR_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1;nc|ENSG00000197177|Q86SQ6-2|ADGRA1;ADGRA1|p.S458Afs*79|1|0.09|ENSG00000197177|chr10:133129193-133129193|C/-|frameshift_variant;ADGRA1|p.R449Afs*88|1|0.36|ENSG00000197177|chr10:133129169-133129169|C/-|frameshift_variant;ENSG00000197177|ENST00000392607|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	626.861672	1251.70879	0.82477	0.00051702	-1.0411	-0.00065264	-0.21635	-0.00013562	627.3625723044227	47.691	0.25893	47.558	47.325	47.584	-0.13281	0.027842	-0.00022448	NaN	29.082	7	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19813000			10878	9598	6277	6318							0.09300473933967623
FLHDNMVEI	9	Unmodified	_FLHDNMVEI_					0	0	0		LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant;nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000593099.5_1_17:33324760-33324883:+|nuORF	LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant	LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	559.2713012695312	2	559.270967	1116.52738	0.67991	0.00038025	-0.34459	-0.00019272	0.33533	0.00018754	559.2708846466863	47.639	0.36224	47.506	47.273	47.636	-0.13281					12	6	3	0	0	0	0.061422	1	18203	18203		69.105	15.272	1	29714000			10879	811	6278	6319	10505	10505					-0.02622207154058742
FLHDNMVEI	9	Unmodified	_FLHDNMVEI_					0	0	0		LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant;nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000593099.5_1_17:33324760-33324883:+|nuORF	LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant	LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	559.270967	1116.52738	0.36876	0.00020624	0.94421	0.00052807	1.313	0.00073431	559.2718493301328	47.502	0.24584	47.502	47.349	47.595	0	-0.0019373	0.0010322	NaN	69.105	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7299000			10880	811	6278	6319							-0.02622207154058742
FLHLFCKLT	9	Unmodified	_FLHLFCKLT_					0	0	0			REV__ENST00000602402.5_1_13:96444840-96445038:+|nuORF	REV__ENST00000602402.5_1_13:96444840-96445038:+|nuORF	MSMS	HCT116MG_D190212_S4	4	561.2608032226562	2	561.312438	1120.61032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.427	1	42.051	41.551	42.551	-0.37565								0	0	0	0.76694	1	15593	15593		11.64	1.5664	1		+		10881	16753	6279	6320	10506	10506					0.05484154364580718
FLHLLQPDLP	10	Unmodified	_FLHLLQPDLP_					0	0	0		CYP21A2|p.V306Afs*8|1|0.05|ENSG00000231852|chr6:32040182-32040183|-/C|frameshift_variant;nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2	CYP21A2|p.V306Afs*8|1|0.05|ENSG00000231852|chr6:32040182-32040183|-/C|frameshift_variant	CYP21A2|p.V306Afs*8|1|0.05|ENSG00000231852|chr6:32040182-32040183|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	398.2299499511719	3	398.229008	1191.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.651	1	43.277	42.777	43.777	-0.37433								0	0	0	0.95241	1	16053	16053		4.1895	0.31317	1				10882	627	6280	6321	10507	10507					0.07702864436851087
FLIHKELKRML	11	Unmodified	_FLIHKELKRML_					0	0	0			REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	REV__tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	476.62384033203125	3	476.623364	1426.84826	0.20534	9.7872E-05	0.63758	0.00030389	0.84293	0.00040176	476.6236779492939	56.145	0.31006	56.145	56.015	56.326	0					9	5	3	0	0	0	0.74191	1	21587	21587		0.45452	0.046251	1	40352000	+		10883	17721	6281	6322	10508	10508					0.15191095226964535
FLILCFLFRP	10	Unmodified	_FLILCFLFRP_					0	0	0		ENST00000378509.8_1_7:133976258-133976573:-|nuORF	ENST00000378509.8_1_7:133976258-133976573:-|nuORF	ENST00000378509.8_1_7:133976258-133976573:-|nuORF	MSMS	HCT116MG_D190212_S1	1	634.8660888671875	2	634.864837	1267.71512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.86	1	32.86	32.36	33.36	0								0	0	0	0.93854	1	12141	12141		7.2892	0.56607	1				10884	7542	6282	6323	10509	10509					0.09197275841142982
FLILFGSQVKD	11	Unmodified	_FLILFGSQVKD_					0	0	0			REV__ENSG00000177025|ENST00000314391|C19orf18	REV__ENSG00000177025|ENST00000314391|C19orf18	MSMS	HCT116MG_D190212_S1	1	633.8583984375	2	633.858264	1265.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.607	1	40.607	40.107	41.107	0								0	0	0	0.95636	1	15268	15268		2.9952	0	1		+		10885	13559	6283	6324	10510	10510					0.07975116262764459
FLINLDVIY	9	Unmodified	_FLINLDVIY_					0	0	0			REV__ENST00000369485.8_1_6:89322215-89322254:-|nuORF	REV__ENST00000369485.8_1_6:89322215-89322254:-|nuORF	MSMS	HCT116MG_D190212_S2	2	555.3173828125	2	555.3157	1108.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.413	1	53.223	52.723	53.723	-0.18931								0	0	0	0.76611	1	20540	20540		14.582	5.2343	1		+		10886	15143	6284	6325	10511	10511					0.06688370796950949
FLIRLWLHNLS	11	Unmodified	_FLIRLWLHNLS_					0	0	0		nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	MSMS	HCT116MG_D190212_S3	3	706.4137573242188	2	706.414072	1410.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.943	1	51.634	51.134	52.134	-0.30927								0	0	0	0.93717	1	19624	19624		13.042	0.80181	1				10887	9434	6285	6326	10512	10512					0.12461595410582049
FLKEKWPE	8	Unmodified	_FLKEKWPE_					0	0	0			REV__ASXL3|p.F353L|1|0.37|ENSG00000141431|chr18:33734392-33734392|C/A|missense_variant	REV__ASXL3|p.F353L|1|0.37|ENSG00000141431|chr18:33734392-33734392|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	538.7910766601562	2	538.792392	1075.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.306	1	56.124	55.624	56.624	-0.18261								0	0	0	0.8837	1	21724	21724		14.582	3.7578	1		+		10888	9998	6286	6327	10513	10513					0.035469309656718906
FLKFFLFVLID	11	Unmodified	_FLKFFLFVLID_					0	0	0			REV__tr|U7SNK8|U7SNK8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02026PE=4SV=1	REV__tr|U7SNK8|U7SNK8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02026PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	701.4119262695312	2	701.412675	1400.8108	0.77027	0.00054028	-1.751	-0.0012282	-0.9807	-0.00068788	701.4113858110618	52.346	0.36032	52.346	52.125	52.485	0					11	6	2	0	0	0	0.74191	1	20009	20009		2.7352	0.45242	1	11929000	+		10889	17736	6287	6328	10514	10514					0.12642327233038486
FLKKMPKKFE	10	Unmodified	_FLKKMPKKFE_					0	0	0			REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	648.2442016601562	2	648.380852	1294.74715	0.65764	0.0004264	-0.89648	-0.00058126	-0.23884	-0.00015486	648.3801183279251	51.147	1.3999	50.969	50.132	51.532	-0.17869					41	26	2	0	0	0	0.87059	1	19392	19392		5.7319	0.83484	1	19750000	+		10890	15565	6288	6329	10515	10515					0.11156643524282117
FLKKMPKKFE	10	Unmodified	_FLKKMPKKFE_					0	0	0			REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MSMS	HCT116MG_D190212_S3	3	648.3805541992188	2	648.380852	1294.74715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.583	1	42.28	41.78	42.78	-0.30352								0	0	0	0.96521	1	15867	15867		1.3295	0	1		+		10891	15565	6288	6329	10516	10516					0.11156643524282117
FLKKMPKKFE	10	Unmodified	_FLKKMPKKFE_					0	0	0			REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MSMS	HCT116MG_D190212_S4	4	648.3809814453125	2	648.380852	1294.74715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.635	1	43.26	42.76	43.76	-0.37433								0	0	0	0.96377	1	16046	16046		1.6526	0.17072	1		+		10892	15565	6288	6329	10517	10517					0.11156643524282117
FLKKMPKKFE	10	Unmodified	_FLKKMPKKFE_					0	0	0			REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MSMS	HCT116MG_D190212_S4	4	648.724609375	2	648.380852	1294.74715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.566	1	50.209	49.709	50.709	-0.35696								0	0	0	0.94551	1	18791	18791		5.7319	1.203	1		+		10893	15565	6288	6329	10518	10518					0.11156643524282117
FLKKVIVTWIG	11	Unmodified	_FLKKVIVTWIG_					0	0	0			REV__ENST00000546155.5_1_19:41119602-41119659:+|nuORF	REV__ENST00000546155.5_1_19:41119602-41119659:+|nuORF	MSMS	HCT116MG_D190212_S1	1	652.4113159179688	2	652.410466	1302.80638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.229	1	56.229	55.729	56.729	0								0	0	0	0.95023	1	21612	21612		6.2058	2.9245	1		+		10894	16399	6289	6330	10519	10519					0.16708862810128267
FLKLISMIP	9	Unmodified	_FLKLISMIP_					0	0	0			REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	REV__tr|U7SNL0|U7SNL0_FUSNUPermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01798PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	531.0274658203125	2	531.325014	1060.63547	0.45936	0.00024407	0.016093	8.5505E-06	0.47545	0.00025262	531.3249258040651	52.459	1.6628	52.119	51.679	53.342	-0.34023					83	31	4	0	0	0	0.74258	1	19860	19860		2.3027	0	1	81848000	+		10895	17737	6290	6331	10520	10520					0.1075820916714747
FLKPDLRRRQ	10	Unmodified	_FLKPDLRRRQ_					0	0	0			REV__ENST00000368218.8_2_1:156698707-156698803:+|nuORF	REV__ENST00000368218.8_2_1:156698707-156698803:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	442.9325256347656	3	443.601839	1327.78369	-0.15609	-6.9242E-05	0.060998	2.7059E-05	-0.095091	-4.2183E-05	443.60186161929346	50.67	0.30981	50.67	50.42	50.73	0					6	5	2	0	0	0	0.31178	1	19276	19276		0.69767	0	1	16268000	+		10896	15130	6291	6332	10521	10521					0.13290656465210304
FLKVGGQDLL	10	Unmodified	_FLKVGGQDLL_					0	0	0			REV__nc|ENSG00000147689|Q86UY5-3|FAM83A	REV__nc|ENSG00000147689|Q86UY5-3|FAM83A	MSMS	HCT116MG_D190212_S4	4	545.3167724609375	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.313	1	46.943	46.443	47.443	-0.37038								0	0	0	0.94339	1	17497	17497		6.2058	0.97511	1		+		10897	12524	6292	6333	10522	10522					0.08222889028479585
FLLCLLPRALP	11	Unmodified	_FLLCLLPRALP_					0	0	0			REV__ENST00000262376.10_1_16:4931488-4931788:+|nuORF	REV__ENST00000262376.10_1_16:4931488-4931788:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	628.38330078125	2	628.383394	1254.75224	0.21828	0.00013717	-0.7333	-0.00046079	-0.51501	-0.00032362	628.3829603351295	49.717	1.1179	49.553	48.824	49.942	-0.16369					55	21	4	0	0	0	0.74191	1	19124	19124		3.5965	0.31518	1	158810000	+		10898	14637	6293	6334	10523	10523					0.1350494738692305
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	HCT116MG_D190212_S1	1	516.8271484375	2	516.826235	1031.63792	0.27665	0.00014298	1.6019	0.00082791	1.8786	0.00097089	516.8269436408111	44.437	0.79068	44.437	43.986	44.777	0					20	14	2	0	0	0	0.0096523	1	16815	16815		114.2	31.672	1	35110000			10899	4831	6294	6335	10524	10524					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	HCT116MG_D190212_S2	2	516.8265380859375	2	516.826235	1031.63792	0.33097	0.00017105	0.34106	0.00017627	0.67203	0.00034732	516.8262552458864	44.47	0.31479	44.385	44.22	44.535	-0.084797					13	5	3	0	0	0	0.0050238	1	16894	16894		137.42	54.895	1	161780000			10900	4831	6294	6335	10525	10525					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	HCT116MG_D190212_S3	3	516.8259887695312	2	516.826235	1031.63792	0.52302	0.00027031	0.11108	5.7408E-05	0.63409	0.00032772	516.82618195635	44.689	0.18605	44.38	44.265	44.451	-0.3091					14	6	3	0	0	0	0.0063854	1	16709	16709		125.53	52.561	1	25989000			10901	4831	6294	6335	10526	10526					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	HCT116MG_D190212_S4	4	516.826416015625	2	516.826235	1031.63792	0.27969	0.00014455	-0.08855	-4.5765E-05	0.19114	9.8786E-05	516.8262526052857	44.746	0.10265	44.372	44.314	44.417	-0.37326					12	8	2	0	0	0	0.026999	1	16486	16486		89.401	37.771	1	8753200			10902	4831	6294	6335	10527	10527					0.12336380896454102
FLLDLLEAY	9	Unmodified	_FLLDLLEAY_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MSMS	HCT116MG_D190212_S3	3	366.2022705078125	3	366.202347	1095.58521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.062	1	28.841	28.341	29.341	-0.22195								0	0	0	0.76862	1	10543	10543		5.7319	0.83484	1				10903	6613	6295	6336	10528	10528					0.041243780430022525
FLLDPVKGERL	11	Unmodified	_FLLDPVKGERL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	429.5867004394531	3	429.587084	1285.73942	0.36518	0.00015688	-0.08531	-3.6648E-05	0.27987	0.00012023	429.58696077881524	47.691	0.36186	47.558	47.377	47.738	-0.13281					13	6	3	0	0	0	0.025539	1	18196	18196		98.634	57.287	1	43640000			10904	5492	6296	6337	10529	10529					0.10798207528387138
FLLDPVKGERL	11	Unmodified	_FLLDPVKGERL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	643.8777465820312	2	643.876988	1285.73942	0.93774	0.00060379	-0.13833	-8.9068E-05	0.79941	0.00051472	643.876717089503	47.691	0.2589	47.558	47.428	47.687	-0.13281					11	4	3	0	0	0	0.012683	1	18205	18205		135.72	81.886	1	38326000			10905	5492	6296	6337	10530	10530					0.10798207528387138
FLLDPVKGERL	11	Unmodified	_FLLDPVKGERL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH	HCT116MG_D190212_S1	1		2	643.876988	1285.73942	0.64295	0.00041398	-0.99555	-0.00064101	-0.3526	-0.00022703	643.8767007887844	47.556	0.15391	47.556	47.441	47.595	0	-0.0043492	-0.0010852	NaN	135.72	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13986000			10906	5492	6296	6337							0.10798207528387138
FLLDPVKGERL	11	Unmodified	_FLLDPVKGERL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH	HCT116MG_D190212_S3	3		2	643.876988	1285.73942	0.35884	0.00023105	0.5589	0.00035986	0.91774	0.00059091	643.878045694089	47.883	0.20818	47.567	47.463	47.671	-0.31561	0.0066793	0.00091651	NaN	135.72	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2039100			10907	5492	6296	6337							0.10798207528387138
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	HCT116MG_D190212_S1	1	549.2978515625	2	549.297507	1096.58046	0.47508	0.00026096	-0.22087	-0.00012132	0.25421	0.00013964	549.2971459418393	47.379	0.37713	47.379	47.269	47.646	0					16	7	3	0	0	0	0.019537	1	18017	18017		96.936	30.479	1	31477000			10908	2357	6297	6338	10531	10531					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	HCT116MG_D190212_S2	2	549.8001098632812	2	549.297507	1096.58046	0.65039	0.00035726	0.016648	9.1446E-06	0.66704	0.0003664	549.2973539653705	47.533	0.67147	47.412	47.078	47.75	-0.12175					31	12	4	0	0	0	0.0068427	1	18118	18118		121.53	45.773	1	178500000			10909	2357	6297	6338	10532	10532					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	HCT116MG_D190212_S3	3	549.297607421875	2	549.297507	1096.58046	0.17822	9.7894E-05	0.39552	0.00021726	0.57373	0.00031515	549.2976863023108	47.752	0.31131	47.437	47.256	47.567	-0.31525					14	5	3	0	0	0	0.0068427	1	17949	17949		121.53	45.773	1	29663000			10910	2357	6297	6338	10533	10533					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	HCT116MG_D190212_S4	4	549.2979736328125	2	549.297507	1096.58046	0.62648	0.00034412	-0.051823	-2.8466E-05	0.57466	0.00031566	549.2974294388266	47.761	0.18487	47.392	47.283	47.468	-0.36907					10	4	3	0	0	0	0.030039	1	17678	17678		86.332	28.61	1	7757800			10911	2357	6297	6338	10534	10534					0.03603493900232024
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S2	2	549.85546875	2	549.855327	1097.6961	0.4953	0.00027234	-0.027055	-1.4876E-05	0.46825	0.00025747	549.8552001981182	56.734	0.21328	56.555	56.421	56.635	-0.17904					8	3	3	0	0	0	0.33066	1	21916	21916		47.749	23.728	1	91608000			10912	5125	6298	6339	10535	10535					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S3	3	549.8555297851562	2	549.855327	1097.6961	0.57913	0.00031844	0.035179	1.9343E-05	0.61431	0.00033778	549.8553078631527	56.826	0.15651	56.547	56.468	56.625	-0.27913					6	2	3	0	0	0	0.48679	1	21607	21607		36.127	14.38	1	4145900			10913	5125	6298	6339	10536	10536					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MATCH	HCT116MG_D190212_S1	1		2	549.855327	1097.6961	0.49492	0.00027214	-0.046066	-2.533E-05	0.44886	0.00024681	549.8552601812178	56.608	0.15463	56.608	56.531	56.686	0	0.03846	-5.6633E-05	NaN	47.749	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10481000			10914	5125	6298	6339							0.15116062541756037
FLLKRTGPLI	10	Unmodified	_FLLKRTGPLI_					0	0	0			REV__ENST00000423490.5_1_10:134421438-134503921:+|nuORF	REV__ENST00000423490.5_1_10:134421438-134503921:+|nuORF	MSMS	HCT116MG_D190212_S4	4	579.3717041015625	2	579.373884	1156.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.08	1	58.798	58.298	59.298	-0.2817								0	0	0	0.96453	1	22223	22223		1.4819	0.15237	1		+		10915	15536	6299	6340	10537	10537					0.16111734087508012
FLLPLCKP	8	Unmodified	_FLLPLCKP_					0	0	0			REV__TAF1C|p.P454Lfs*14|1|0.28|ENSG00000103168|chr16:84181068-84181068|G/-|frameshift_variant	REV__TAF1C|p.P454Lfs*14|1|0.28|ENSG00000103168|chr16:84181068-84181068|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	465.7772521972656	2	465.777699	929.540846	0.10219	4.7598E-05	-0.15423	-7.1837E-05	-0.05204	-2.4239E-05	465.77747537604694	44.208	2.867	44.208	43.108	45.975	0					104	54	4	0	0	0	0.86388	1	16940	16940		2.8892	0	1	83001000	+		10916	17614	6300	6341	10538	10538					0.07325695415806877
FLLTIAYLIVK	11	Unmodified	_FLLTIAYLIVK_					0	0	0		ARL6IP6|p.A126T|1|0.44|ENSG00000177917|chr2:152719000-152719000|G/A|missense_variant	ARL6IP6|p.A126T|1|0.44|ENSG00000177917|chr2:152719000-152719000|G/A|missense_variant	ARL6IP6|p.A126T|1|0.44|ENSG00000177917|chr2:152719000-152719000|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	647.4097290039062	2	647.412675	1292.8108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.782	1	59.524	59.024	60.024	-0.25832								0	0	0	0.95954	1	22775	22775		1.3295	0	1				10917	188	6301	6342	10539	10539					0.17610327233001044
FLMILDLKL	9	Unmodified	_FLMILDLKL_					0	0	0		ENST00000539098.5_1_12:133618053-133624816:+|nuORF;ENST00000543124.1_1_12:133624462-133624816:+|nuORF	ENST00000539098.5_1_12:133618053-133624816:+|nuORF	ENST00000539098.5_1_12:133618053-133624816:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	553.338134765625	2	553.338121	1104.66169	0.31519	0.00017441	0.13916	7.7001E-05	0.45435	0.00025141	553.3381065500232	52.871	1.5999	52.681	51.933	53.533	-0.18922					90	30	5	0	0	0	0.70732	1	20581	20581		4.756	0.42677	1	288320000			10918	8680	6302	6343	10540	10540					0.11354478338625995
FLMILDLKL	9	Unmodified	_FLMILDLKL_					0	0	0		ENST00000539098.5_1_12:133618053-133624816:+|nuORF;ENST00000543124.1_1_12:133624462-133624816:+|nuORF	ENST00000539098.5_1_12:133618053-133624816:+|nuORF	ENST00000539098.5_1_12:133618053-133624816:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	553.338121	1104.66169	0.55002	0.00030435	-0.20069	-0.00011105	0.34932	0.00019329	553.3378907648668	52.716	0.77018	52.716	52.434	53.204	0	0.017331	-0.00029546	NaN	4.756	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57723000			10919	8680	6302	6343							0.11354478338625995
FLMLGVLLV	9	Unmodified	_FLMLGVLLV_					0	0	0		ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	504.4676818847656	2	502.814282	1003.61401	0.34269	0.00017231	0.071836	3.612E-05	0.41453	0.00020843	502.81419641010854	52.878	1.718	52.537	52.093	53.811	-0.34023					99	32	5	0	0	0	0.74258	1	19635	19635		2.3027	0	1	159500000			10920	6871	6303	6344	10541	10541					0.11234824138455224
FLNGKWVKK	9	Unmodified	_FLNGKWVKK_					0	0	0		nc|ENSG00000088756|Q9P2N2-3|ARHGAP28;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28	nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MSMS	HCT116MG_D190212_S3	3	559.9627075195312	2	560.337301	1118.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.558	1	55.269	54.769	55.769	-0.28821								0	0	0	0.76902	1	21075	21075		4.3292	0	1				10921	9396	6304	6345	10542	10542					0.10546605364879724
FLNKIHVL	8	Unmodified	_FLNKIHVL_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;MACF1|p.A5223Lfs*8|1|0.21|ENSG00000127603|chr1:39388486-39388486|G/-|frameshift_variant	nc|ENSG00000127603|Q9UPN3-3|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MSMS	HCT116MG_D190212_S1	1	492.30670166015625	2	492.30547	982.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.858	1	55.858	55.358	56.358	0								0	0	0	0.8837	1	21460	21460		9.3474	3.587	1				10922	2973	6305	6346	10543	10543					0.10439244927783875
FLNLYRQR	8	Unmodified	_FLNLYRQR_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MSMS	HCT116MG_D190212_S2	2	555.3137817382812	2	555.314358	1108.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.337	1	54.148	53.648	54.648	-0.1894								0	0	0	0.8837	1	20917	20917		13.508	1.2672	1		+		10923	10850	6306	6347	10544	10544					0.06419960182643081
FLNPDEVHAI	10	Unmodified	_FLNPDEVHAI_					0	0	0		FAM83D|p.H515Tfs*6|1|0.37|ENSG00000101447|chr20:38952300-38952300|C/-|frameshift_variant;nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	FAM83D|p.H515Tfs*6|1|0.37|ENSG00000101447|chr20:38952300-38952300|C/-|frameshift_variant	FAM83D|p.H515Tfs*6|1|0.37|ENSG00000101447|chr20:38952300-38952300|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	577.3326416015625	2	577.795663	1153.57677	0.58044	0.00033538	1.1444	0.00066124	1.7248	0.00099661	577.7958974469507	44.931	0.20847	44.842	44.739	44.947	-0.088554					5	3	2	0	0	0	0.16429	1	17075	17075		65.235	32.93	1	4366000			10924	1791	6307	6348	10545	10545					0.006128241263922973
FLNPDTKIT	9	Unmodified	_FLNPDTKIT_					0	0	0			REV__ENSG00000145708|ENST00000274368|CRHBP	REV__ENSG00000145708|ENST00000274368|CRHBP	MULTI-SECPEP	HCT116MG_D190212_S2	2	525.2490234375	2	524.787307	1047.56006	0.64153	0.00033667	-0.10978	-5.761E-05	0.53175	0.00027906	524.787165531448	31.596	0.36316	31.348	31.095	31.458	-0.24883					12	6	2	0	0	0	0.12947	1	11690	11690		56.177	0	1	19716000	+		10925	12455	6308	6349	10546	10546					0.038183232404207956
FLNREVLQR	9	Unmodified	_FLNREVLQR_					0	0	0		PEPD|p.R444C|1|0.33|ENSG00000124299|chr19:33387904-33387904|G/A|missense_variant;ENST00000593085.1_1_19:33878252-33879176:-|nuORF;nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD	PEPD|p.R444C|1|0.33|ENSG00000124299|chr19:33387904-33387904|G/A|missense_variant	PEPD|p.R444C|1|0.33|ENSG00000124299|chr19:33387904-33387904|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	392.2277526855469	3	392.22789	1173.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.259	1	57.259	56.759	57.759	0								0	0	0	0.76967	1	22030	22030		1.0715	0	1				10926	2841	6309	6350	10547	10547					0.0819561438281653
FLNRRRRRER	10	Unmodified	_FLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	HCT116MG_D190212_S2	2	729.9352416992188	2	729.934891	1457.85523	0.87304	0.00063727	-0.15047	-0.00010983	0.72258	0.00052743	729.9346513034387	53.387	1.0829	53.198	52.553	53.636	-0.18922					48	20	3	0	0	0	0.89204	1	20657	20657		1.3295	1.3295	1	39264000			10927	4088	6310	6351	10548	10548					0.1446158894243581
FLNRRRRRER	10	Unmodified	_FLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	HCT116MG_D190212_S2	2	486.959228515625	3	486.95902	1457.85523	0.072302	3.5208E-05	0.067001	3.2627E-05	0.1393	6.7835E-05	486.9591423450058	53.495	1.0317	53.306	52.604	53.636	-0.1894					43	19	3	0	0	0	0.89149	1	20706	20706		0.69767	0.19171	1	20023000			10928	4088	6310	6351	10549	10549					0.1446158894243581
FLNRRRRRER	10	Unmodified	_FLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MATCH	HCT116MG_D190212_S1	1		3	486.95902	1457.85523	0.37228	0.00018128	-0.48533	-0.00023633	-0.11305	-5.5051E-05	486.9587391446536	52.973	0.35889	52.973	52.794	53.153	0	-0.16622	-0.00061991	NaN	0.69767	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79987000			10929	4088	6310	6351							0.1446158894243581
FLPRSNLLL	9	Unmodified	_FLPRSNLLL_					0	0	0		nc|ENSG00000174038|Q5VYM1-3|SPATA31G1;nc|ENSG00000174038|Q5VYM1-2|SPATA31G1;ENSG00000174038|ENST00000312292|C9orf131	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MSMS	HCT116MG_D190212_S1	1	358.2223815917969	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.438	1	58.438	57.938	58.938	0								0	0	0	0.76991	1	22512	22512		1.1933	0	1				10930	5317	6311	6352	10550	10550					0.11110899127993434
FLPRSNLLL	9	Unmodified	_FLPRSNLLL_					0	0	0		nc|ENSG00000174038|Q5VYM1-3|SPATA31G1;nc|ENSG00000174038|Q5VYM1-2|SPATA31G1;ENSG00000174038|ENST00000312292|C9orf131	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MSMS	HCT116MG_D190212_S2	2	358.22222900390625	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.448	1	58.278	57.778	58.778	-0.1703								0	0	0	0.7694	1	22589	22589		2.9952	0	1				10931	5317	6311	6352	10551	10551					0.11110899127993434
FLPSYIIDV	9	Unmodified	_FLPSYIIDV_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1066.105224609375	1	1066.58192	1065.57465	0.62784	0.00066965	-0.3201	-0.00034141	0.30774	0.00032823	1066.5811546795776	57.857	0.25952	57.857	57.671	57.931	0					8	4	3	0	0	0	0.020181	2	22263	22263;22295		96.285	14.672	1	18239000			10932	594	6312	6353	10552;10553	10552					0.044483953885674055
FLQTNPAVPP	10	Unmodified	_FLQTNPAVPP_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-5|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-5|SLC26A6	MSMS	HCT116MG_D190212_S3	3	542.2933349609375	2	542.295299	1082.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.716	1	20.75	20.25	21.25	0.034473								0	0	0	0.82636	1	7180	7180		25.399	1.3787	1		+		10933	14307	6313	6354	10554	10554					0.03806029477323136
FLREIKRLPVG	11	Unmodified	_FLREIKRLPVG_					0	0	0			REV__ENST00000512204.5_1_17:48185497-48187458:+|nuORF	REV__ENST00000512204.5_1_17:48185497-48187458:+|nuORF	MSMS	HCT116MG_D190212_S2	2	664.4148559570312	2	664.414072	1326.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.121	1	57.951	57.451	58.451	-0.1703								0	0	0	0.95521	1	22454	22454		3.5965	0	1		+		10934	10480	6314	6355	10555	10555					0.16325595410535243
FLRHIERCK	9	Unmodified	_FLRHIERCK_					0	0	0		tr|U7SL66|U7SL66_FUSNUGTPaseObgOS=FusobacteriumnucleatumCTI-5OX=1316586GN=obgPE=3SV=1	tr|U7SL66|U7SL66_FUSNUGTPaseObgOS=FusobacteriumnucleatumCTI-5OX=1316586GN=obgPE=3SV=1	tr|U7SL66|U7SL66_FUSNUGTPaseObgOS=FusobacteriumnucleatumCTI-5OX=1316586GN=obgPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	601.3353881835938	2	601.334767	1200.65498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.241	1	61.992	61.492	62.492	-0.24919								0	0	0	0.7701	1	23499	23499		0.52476	0.066424	1				10935	18332	6315	6356	10556	10556					0.06267978230630433
FLRPNFLIMFS	11	Unmodified	_FLRPNFLIMFS_					0	0	0		tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	tr|U7SNH4|U7SNH4_FUSNUCitrate-sodiumsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01991PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	462.2528381347656	3	462.253048	1383.73731	0.17735	8.1982E-05	-0.053261	-2.462E-05	0.12409	5.7362E-05	462.5873610992196	21.359	0.26474	21.359	21.173	21.437	0					9	4	3	0	0	0	0.74191	1	7517	7517		4.1166	0	1	9057900			10936	18363	6316	6357	10557	10557					0.06079455518897703
FLRRRNRRRA	10	Unmodified	_FLRRRNRRRA_					0	0	0			REV__ENSG00000168421|ENST00000381799|RHOH	REV__ENSG00000168421|ENST00000381799|RHOH	MULTI-MSMS	HCT116MG_D190212_S2	2	700.9327392578125	2	700.932151	1399.84975	0.88835	0.00062267	-0.047066	-3.299E-05	0.84128	0.00058968	700.9319987993667	56.461	0.52594	56.279	56.052	56.578	-0.18261					20	9	3	0	0	0	0.88752	1	21797	21797		1.6526	1.6526	1	35319000	+		10937	13200	6317	6358	10558	10558					0.16581910150625845
FLRRRNRRRA	10	Unmodified	_FLRRRNRRRA_					0	0	0			REV__ENSG00000168421|ENST00000381799|RHOH	REV__ENSG00000168421|ENST00000381799|RHOH	MULTI-MATCH	HCT116MG_D190212_S1	1		2	700.932151	1399.84975	0.76194	0.00053407	0.23243	0.00016292	0.99437	0.00069699	700.93197389875	56.299	0.61872	56.299	56.067	56.686	0	0.010283	0.00033593	NaN	1.6526	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17323000	+		10938	13200	6317	6358							0.16581910150625845
FLRRRNRRRA	10	Unmodified	_FLRRRNRRRA_					0	0	0			REV__ENSG00000168421|ENST00000381799|RHOH	REV__ENSG00000168421|ENST00000381799|RHOH	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	700.932151	1399.84975	0.88835	0.00062267	-0.047066	-3.299E-05	0.84128	0.00058968	700.9319987993667	56.461	0.52594	56.279	56.052	56.578	-0.18261	-0.010283	-5.5882E-05	NaN	1.6526	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35319000	+		10939	13200	6317	6358							0.16581910150625845
FLSEHPNVTL	10	Unmodified	_FLSEHPNVTL_					0	0	0		nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-2|APOBEC3B	nc|ENSG00000179750|Q9UH17-2|APOBEC3B	MSMS	HCT116MG_D190212_S1	1	578.803955078125	2	578.803488	1155.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.43	1	43.43	42.93	43.93	0								0	0	0	0.065026	1	16407	16407		90.135	48.04	1				10940	5567	6318	6359	10559	10559					0.020851106434292888
FLSEHPNVTL	10	Unmodified	_FLSEHPNVTL_					0	0	0		nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-2|APOBEC3B	nc|ENSG00000179750|Q9UH17-2|APOBEC3B	MULTI-MSMS	HCT116MG_D190212_S2	2	578.8035888671875	2	578.803488	1155.59242	0.41835	0.00024214	-0.044706	-2.5876E-05	0.37364	0.00021626	578.8034524770118	43.485	0.361	43.412	43.2	43.561	-0.073372					17	6	4	0	0	0	0.011728	1	16478	16478		139.78	82.06	1	77438000			10941	5567	6318	6359	10560	10560					0.020851106434292888
FLSKQQASQV	10	Unmodified	_FLSKQQASQV_					0	0	0		ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	MULTI-MSMS	HCT116MG_D190212_S1	1	568.3091430664062	2	568.308938	1134.60332	0.32534	0.00018489	0.32083	0.00018233	0.64617	0.00036723	568.309052256784	27.099	0.20785	27.099	26.97	27.178	0					5	3	2	0	0	0	0.02711	1	9845	9845		121.5	45.742	1	9720500			10942	5774	6319	6360	10561	10561					0.04140513017682679
FLSKQQASQV	10	Unmodified	_FLSKQQASQV_					0	0	0		ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	MULTI-MSMS	HCT116MG_D190212_S2	2	568.3091430664062	2	568.308938	1134.60332	0.59195	0.00033641	-0.35491	-0.0002017	0.23704	0.00013471	568.3085008538258	27.559	0.36196	27.217	26.933	27.295	-0.34201					11	6	3	0	0	0	0.019893	1	10017	10017		146.68	39.493	1	28192000			10943	5774	6319	6360	10562	10562					0.04140513017682679
FLSKQQASQVL	11	Unmodified	_FLSKQQASQVL_					0	0	0		ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	MULTI-MSMS	HCT116MG_D190212_S2	2	624.8515625	2	624.85097	1247.68739	0.28113	0.00017567	0.36338	0.00022706	0.64451	0.00040272	624.8509879585346	37.958	0.25817	37.865	37.753	38.011	-0.093006					8	4	2	0	0	0	0.057688	1	14277	14277		96.936	40.758	1	16493000			10944	5774	6320	6361	10563	10563					0.07345044114595112
FLSLGHTKRPP	11	Unmodified	_FLSLGHTKRPP_					0	0	0			REV__ENST00000261497.8_1_17:20903335-20903428:-|nuORF	REV__ENST00000261497.8_1_17:20903335-20903428:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	627.3637084960938	2	626.861672	1251.70879	0.38109	0.00023889	-0.6168	-0.00038665	-0.23571	-0.00014775	626.8612778078027	47.88	0.43687	47.511	47.341	47.778	-0.36907					13	8	2	0	0	0	0.73981	1	17807	17807		7.1017	0.37856	1	15118000	+		10945	14627	6321	6362	10564	10564					0.09300473933990361
FLSPHKDKL	9	Unmodified	_FLSPHKDKL_					0	0	0			REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	MSMS	HCT116MG_D190212_S1	1	542.7616577148438	2	542.811116	1083.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.795	1	50.795	50.295	51.295	0								0	0	0	0.76759	1	19391	19391		9.3831	2.0939	1		+		10946	10998	6322	6363	10565	10565					0.06922022231265146
FLSQTGHGV	9	Unmodified	_FLSQTGHGV_					0	0	0		nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	MULTI-SECPEP	HCT116MG_D190212_S2	2	473.2537536621094	2	473.243067	944.47158	-0.10884	-5.1509E-05	0.32203	0.0001524	0.21319	0.00010089	473.24317477034595	30.132	0.20628	29.848	29.718	29.925	-0.28453					5	3	2	0	0	0	0.19551	1	11091	11091		26.884	0	1	18537000			10947	3081	6323	6364	10566	10566					-0.0028767227936441486
FLSSELQEEV	10	Unmodified	_FLSSELQEEV_					0	0	0		nc|ENSG00000176927|A4FU69-6|EFCAB5;EFCAB5|p.F843Lfs*13|1|0.49|ENSG00000176927|chr17:30057834-30057834|T/-|frameshift_variant;nc|ENSG00000176927|A4FU69-5|EFCAB5;nc|ENSG00000176927|A4FU69-2|EFCAB5;nc|ENSG00000176927|A4FU69-4|EFCAB5;nc|ENSG00000176927|A4FU69-3|EFCAB5;ENSG00000176927|ENST00000394835|EFCAB5	nc|ENSG00000176927|A4FU69-6|EFCAB5	nc|ENSG00000176927|A4FU69-6|EFCAB5	MSMS	HCT116MG_D190212_S2	2	394.1970520019531	3	394.195921	1179.56593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.76	1	28.444	27.944	28.944	-0.31613								0	0	0	0.95511	1	10505	10505		3.5871	0	1				10948	758	6324	6365	10567	10567					-0.016666230385681047
FLTALVDIVRS	11	Unmodified	_FLTALVDIVRS_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000533676.5_1_11:61641288-61643947:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	MSMS	HCT116MG_D190212_S1	1	617.3656616210938	2	617.363713	1232.71287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.211	1	57.211	56.711	57.711	0								0	0	0	0.9387	1	22011	22011		12.241	0.74595	1				10949	6474	6325	6366	10568	10568					0.105825186370339
FLTGVTTEL	9	Unmodified	_FLTGVTTEL_					0	0	0		ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant;ZNF518A|p.I1254Nfs*11|1|0.18|ENSG00000177853|chr10:96160075-96160076|-/A|frameshift_variant;ENSG00000177853|ENST00000316045|ZNF518A	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	ZNF518A|p.L1107Ffs*8|1|0.31|ENSG00000177853|chr10:96159635-96159636|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	980.5305786132812	1	980.529889	979.522613	0.73742	0.00072306	-0.31328	-0.00030718	0.42414	0.00041588	980.5291342774168	52.768	0.25737	52.581	52.451	52.708	-0.18725					7	4	2	0	0	0	0.050578	1	20303	20303		74.423	13.065	1	17678000			10950	5475	6326	6367	10569	10569					0.032032319747941074
FLTLIFVGVP	10	Unmodified	_FLTLIFVGVP_					0	0	0		SLC6A1|p.A93V|1|0.93|ENSG00000157103|chr3:11017882-11017882|C/T|missense_variant	SLC6A1|p.A93V|1|0.93|ENSG00000157103|chr3:11017882-11017882|C/T|missense_variant	SLC6A1|p.A93V|1|0.93|ENSG00000157103|chr3:11017882-11017882|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	553.3380737304688	2	553.336436	1104.65832	0.57807	0.00031987	2.8272	0.0015644	3.4053	0.0018843	553.3381065404377	54.968	0.20372	54.968	54.841	55.044	0					5	3	2	0	0	0	0.84919	1	21124	21124		7.9102	0.62092	1	23463000			10951	18168	6327	6368	10570	10570					0.11017551556301441
FLVETGFRLV	10	Unmodified	_FLVETGFRLV_					0	0	0		AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|15|1|anti-sense	AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|15|1|anti-sense	AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|15|1|anti-sense	MULTI-SECPEP	HCT116MG_D190212_S1	1	590.8400268554688	2	590.839874	1179.66519	0.52898	0.00031254	-0.30699	-0.00018138	0.22199	0.00013116	590.8397901980172	57.852	0.20771	57.852	57.723	57.931	0					5	3	2	0	0	0	0.30856	1	22300	22300		10.824	8.7642	1	19168000			10952	109	6328	6369	10571	10571					0.082548644368444
FLVILLVYGWS	11	Unmodified	_FLVILLVYGWS_					0	0	0			REV__ENSG00000226887|ENST00000443173|ERVMER34-1	REV__ENSG00000226887|ENST00000443173|ERVMER34-1	MSMS	HCT116MG_D190212_S2	2	655.3826904296875	2	655.381374	1308.7482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.141	1	50.962	50.462	51.462	-0.17868								0	0	0	0.94538	1	19614	19614		8.7454	2.0222	1		+		10953	14313	6329	6370	10572	10572					0.10617181164820977
FLVTRRKPL	9	Unmodified	_FLVTRRKPL_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MSMS	HCT116MG_D190212_S1	1	565.0060424804688	2	565.36385	1128.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.502	1	40.502	40.002	41.002	0								0	0	0	0.76902	1	15225	15225		4.3292	0	1			+	10954	571	6330	6371	10573	10573					0.15393983147532708
FLVWRRFSERR	11	Unmodified	_FLVWRRFSERR_					0	0	0		ENST00000548897.1_2_12:104322314-104323808:-|nuORF	ENST00000548897.1_2_12:104322314-104323808:-|nuORF	ENST00000548897.1_2_12:104322314-104323808:-|nuORF	MSMS	HCT116MG_D190212_S2	2	517.7969360351562	3	517.960026	1550.85825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.32	1	50.148	49.648	50.648	-0.1719								0	0	0	0.95976	1	19284	19284		1.2148	0.80657	1				10955	8742	6331	6372	10574	10574					0.10485419276551511
FLWKEPATM	9	Unmodified	_FLWKEPATM_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	HCT116MG_D190212_S2	2	561.78515625	2	561.786253	1121.55795	0.33682	0.00018922	-0.6172	-0.00034673	-0.28038	-0.00015751	561.786024070585	49.215	0.50523	49.061	48.733	49.238	-0.15405					12	9	2	0	0	0	0.14362	3	18859	18802;18840;18859		49.554	9.6046	1	47669000			10956	3700	6332	6373	10575;10576;10577	10577					0.002035712309407245
FLWKWKKFVRR	11	Unmodified	_FLWKWKKFVRR_					0	0	0		ENST00000429378.5_3_16:242971-256079:-|nuORF	ENST00000429378.5_3_16:242971-256079:-|nuORF	ENST00000429378.5_3_16:242971-256079:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.9915161132812	3	531.989146	1592.94561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.043	1	50.729	50.229	51.229	-0.31361								0	0	0	0.96141	1	19263	19263		0.094841	0.094841	1				10957	7837	6333	6374	10578	10578					0.17285245218113232
FLWKWKKFVRR	11	Unmodified	_FLWKWKKFVRR_					0	0	0		ENST00000429378.5_3_16:242971-256079:-|nuORF	ENST00000429378.5_3_16:242971-256079:-|nuORF	ENST00000429378.5_3_16:242971-256079:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.9915161132812	3	531.989146	1592.94561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.873	1	55.585	55.085	56.085	-0.28773								0	0	0	0.96141	1	21199	21199		0.094841	0.094841	1				10958	7837	6333	6374	10579	10579					0.17285245218113232
FLWLRWRILRL	11	Unmodified	_FLWLRWRILRL_					0	0	0		ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	MSMS	HCT116MG_D190212_S1	1	786.71875	2	786.487905	1570.96126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.77	1	41.77	41.27	42.27	0								0	0	0	0.96141	1	15737	15737		0.35063	0	1				10959	2997	6334	6375	10580	10580					0.19861531735205062
FLYCGGEY	8	Unmodified	_FLYCGGEY_					0	0	0			REV__ENST00000526562.5_1_11:8704757-8706293:+|nuORF	REV__ENST00000526562.5_1_11:8704757-8706293:+|nuORF	MSMS	HCT116MG_D190212_S4	4	475.86370849609375	2	476.199479	950.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.094	1	56.794	56.294	57.294	-0.3004								0	0	0	0.8837	1	21421	21421		2.8892	0.31174	1		+		10960	16277	6335	6376	10581	10581					-0.09277214545306833
FLYLCFIFQRT	11	Unmodified	_FLYLCFIFQRT_					0	0	0		nc|ENSG00000230301|Q8NGV6|OR5H6	nc|ENSG00000230301|Q8NGV6|OR5H6	nc|ENSG00000230301|Q8NGV6|OR5H6	MULTI-MSMS	HCT116MG_D190212_S2	2	726.3831176757812	2	725.881216	1449.74788	1.3364	0.00097008	-1.3215	-0.00095926	0.014902	1.0817E-05	725.8800245611441	47.845	0.25815	47.713	47.532	47.79	-0.13281					10	4	3	0	0	0	0.7259	1	18273	18273		12.241	1.4411	1	71452000			10961	9644	6336	6377	10582	10582					0.04099438173307135
FLYLKWRVKKV	11	Unmodified	_FLYLKWRVKKV_					0	0	0		ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	MSMS	HCT116MG_D190212_S3	3	740.4646606445312	2	740.463564	1478.91258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.445	1	53.142	52.642	53.642	-0.30305								0	0	0	0.95925	1	20228	20228		1.4819	0	1				10962	6402	6337	6378	10583	10583					0.19227618375407474
FLYLKWRVKKV	11	Unmodified	_FLYLKWRVKKV_					0	0	0		ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	MSMS	HCT116MG_D190212_S4	4	740.4657592773438	2	740.463564	1478.91258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.527	1	53.192	52.692	53.692	-0.33473								0	0	0	0.96141	1	19987	19987		0.35063	0	1				10963	6402	6337	6378	10584	10584					0.19227618375407474
FLYSANAA	8	Unmodified	_FLYSANAA_					0	0	0			REV__ENST00000233813.4_1_2:217559937-217560138:-|nuORF	REV__ENST00000233813.4_1_2:217559937-217560138:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	428.7136535644531	2	428.713611	855.412668	0.28181	0.00012082	-0.36057	-0.00015458	-0.078759	-3.3765E-05	428.7133687840267	30.035	0.21158	29.797	29.662	29.873	-0.23729					8	3	3	0	0	0	0.64404	1	10934	10934		28.487	1.6032	1	6537700	+		10964	14553	6338	6379	10585	10585					-0.02082148573720133
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;BTBD1|p.K388Sfs*28|1|0.19|ENSG00000064726|chr15:83018834-83018834|T/-|frameshift_variant;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	HCT116MG_D190212_S2	2	557.2764282226562	2	557.276772	1112.53899	0.21728	0.00012109	-0.43577	-0.00024284	-0.21849	-0.00012176	557.276382980301	53.387	0.41101	53.198	53.07	53.481	-0.18922					9	7	2	0	0	0	0.12994	1	20567	20567		52.268	20.151	1	9717500			10965	285	6339	6380	10586	10586					-0.012776868590890444
FLYYRLVRKQ	10	Unmodified	_FLYYRLVRKQ_					0	0	0			REV__ENSG00000159363|ENST00000326735|ATP13A2	REV__ENSG00000159363|ENST00000326735|ATP13A2	MSMS	HCT116MG_D190212_S2	2	693.1820678710938	2	693.406247	1384.79794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.679	1	28.36	27.86	28.86	-0.31984								0	0	0	0.93854	1	10472	10472		7.2892	1.9923	1		+		10966	12803	6340	6381	10587	10587					0.1209330889348621
FMEKETPLRY	10	Unmodified	_FMEKETPLRY_					0	0	0		nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	MULTI-MSMS	HCT116MG_D190212_S1	1	657.3323364257812	2	657.331556	1312.64856	0.82665	0.00054338	0.50043	0.00032895	1.3271	0.00087233	657.331565970126	35.241	0.25768	35.241	35.114	35.371	0					10	4	3	0	0	0	0.022931	1	13127	13127		115.06	80.657	1	21643000			10967	5309	6341	6382	10588	10588					0.004739954885963016
FMEKETPLRY	10	Unmodified	_FMEKETPLRY_					0	0	0		nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	MULTI-MSMS	HCT116MG_D190212_S2	2	657.8324584960938	2	657.331556	1312.64856	0.50633	0.00033282	-0.047568	-3.1268E-05	0.45876	0.00030156	657.3315194966922	35.256	0.25828	35.113	34.932	35.19	-0.14245					11	4	3	0	0	0	0.00068009	2	13137	13135;13137		182.24	138.46	1	131800000			10968	5309	6341	6382	10589;10590	10590					0.004739954885963016
FMEKETPLRY	10	Unmodified	_FMEKETPLRY_					0	0	0		nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	MULTI-MSMS	HCT116MG_D190212_S2	2	438.5567321777344	3	438.556796	1312.64856	0.06331	2.7765E-05	-0.47969	-0.00021037	-0.41637	-0.0001826	438.55652677989843	35.241	0.25828	35.098	34.932	35.19	-0.14245					14	4	4	0	0	0	0.016452	1	13148	13148		103.69	84.969	1	67711000			10969	5309	6341	6382	10591	10591					0.004739954885963016
FMEKETPLRY	10	Unmodified	_FMEKETPLRY_					0	0	0		nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	MSMS	HCT116MG_D190212_S3	3	438.55694580078125	3	438.556796	1312.64856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.514	1	35.215	34.715	35.715	-0.29922								0	0	0	0.050408	1	13102	13102		80.24	65.402	1				10970	5309	6341	6382	10592	10592					0.004739954885963016
FMEKETPLRY	10	Unmodified	_FMEKETPLRY_					0	0	0		nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	nc|ENSG00000173852|Q2PZI1|DPY19L1	MULTI-MATCH	HCT116MG_D190212_S1	1		3	438.556796	1312.64856	0.15271	6.6972E-05	-0.26592	-0.00011662	-0.11321	-4.9648E-05	438.8911156558032	35.241	0.20557	35.241	35.114	35.319	0	0.071155	7.5646E-05	NaN	103.69	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8229600			10971	5309	6341	6382							0.004739954885963016
FMGSKGGV	8	Unmodified	_FMGSKGGV_					0	0	0			REV__ENST00000500093.2_1_5:55291038-55291134:+|nuORF	REV__ENST00000500093.2_1_5:55291038-55291134:+|nuORF	MSMS	HCT116MG_D190212_S2	2	391.6968078613281	2	391.696906	781.37926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.398	1	29.097	28.597	29.597	-0.30095								0	0	0	0.62663	1	10767	10767		36.044	17.909	1		+		10972	16111	6342	6383	10593	10593					-0.02017473617252108
FMKEFKEL	8	Unmodified	_FMKEFKEL_					0	0	0		DZIP1|p.K318N|1|0.21|ENSG00000134874|chr13:95624786-95624786|C/A|missense_variant;DZIP1|p.E777Kfs*6|2|0.22|ENSG00000134874|chr13:95586027-95586027|T/-|frameshift_variant;DZIP1|p.K806Nfs*22|1|0.34|ENSG00000134874|chr13:95584842-95584842|T/-|frameshift_variant;nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1	DZIP1|p.K318N|1|0.21|ENSG00000134874|chr13:95624786-95624786|C/A|missense_variant	DZIP1|p.K318N|1|0.21|ENSG00000134874|chr13:95624786-95624786|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	536.3704833984375	2	536.280803	1070.54705	0.45965	0.0002465	0.28143	0.00015092	0.74108	0.00039742	536.2809656302418	52.081	0.96641	51.771	50.964	51.931	-0.30927					19	18	2	0	0	0	0.84415	1	19568	19568		6.3541	0.14832	1	10550000			10973	745	6343	6384	10594	10594					0.014601688566926896
FMLFIIIIH	9	Unmodified	_FMLFIIIIH_					0	0	0			REV__ENSG00000184394|ENST00000641086|OR4N5	REV__ENSG00000184394|ENST00000641086|OR4N5	MSMS	HCT116MG_D190212_S2	2	382.8949890136719	3	382.896313	1145.66711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.038	1	36.923	36.423	37.423	-0.11478								0	0	0	0.76862	1	13870	13870		5.7319	1.8555	1		+		10974	13797	6344	6385	10595	10595					0.10010201921113548
FMPGSPWTCP	10	Unmodified	_FMPGSPWTCP_					0	0	0		SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	SLC40A1|p.L398Wfs*55|1|0.2|ENSG00000138449|chr2:189563794-189563794|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	374.82940673828125	3	374.829751	1121.46742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.216	1	10.216	9.716	10.716	0								0	0	0	0.95351	1	3123	3123		1.9064	0.45126	1				10975	18163	6345	6386	10596	10596					-0.08845221088949984
FMSRTNRPP	9	Unmodified	_FMSRTNRPP_					0	0	0		ENST00000478088.1_1_16:76269257-76269449:-|nuORF;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18	ENST00000478088.1_1_16:76269257-76269449:-|nuORF	ENST00000478088.1_1_16:76269257-76269449:-|nuORF	MSMS	HCT116MG_D190212_S3	3	369.1910095214844	3	369.190559	1104.54985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.766	1	46.452	45.952	46.952	-0.31405								0	0	0	0.76967	1	17544	17544		1.0715	0	1				10976	1128	6346	6387	10597	10597					0.0017543703420415113
FMSSVKGS	8	Unmodified	_FMSSVKGS_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MSMS	HCT116MG_D190212_S1	1	842.4082641601562	1	842.407666	841.400389	0.73994	0.00062333	-0.039704	-3.3447E-05	0.70023	0.00058988	842.4075123907198	23.288	0.15631	23.288	23.158	23.314	0					4	2	2	0	0	0	0.41924	1	8295	8295		48.346	8.3885	1	5832300			10977	6452	6347	6388	10598	10598					-0.026655083083937825
FNASTGRVNAT	11	Unmodified	_FNASTGRVNAT_					0	0	0		nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;CSMD3|p.A3641Cfs*13|1|0.36|ENSG00000164796|chr8:112228799-112228800|-/A|frameshift_variant;nc|ENSG00000164796|Q7Z407-2|CSMD3;CSMD3|p.F3640Lfs*61|7|0.35|ENSG00000164796|chr8:112228800-112228800|A/-|frameshift_variant;ENSG00000164796|ENST00000297405|CSMD3	nc|ENSG00000164796|Q7Z407-3|CSMD3	nc|ENSG00000164796|Q7Z407-3|CSMD3	MULTI-MSMS	HCT116MG_D190212_S3	3	379.8597717285156	3	379.859755	1136.55744	-0.29251	-0.00011111	-0.23874	-9.0689E-05	-0.53125	-0.0002018	379.85966244975367	17.173	0.20804	17.257	17.12	17.329	0.084467					8	3	3	0	0	0	0.70377	1	5766	5766		12.228	4.2822	1	3529500			10978	607	6348	6389	10599	10599					-0.005381321645245407
FNGCCCNY	8	Unmodified	_FNGCCCNY_					0	0	0			REV__ENSG00000186980|ENST00000334160|KRTAP23-1	REV__ENSG00000186980|ENST00000334160|KRTAP23-1	MSMS	HCT116MG_D190212_S1	1	462.1472473144531	2	462.145866	922.277179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.377	1	41.377	40.877	41.877	0								0	0	0	0.8837	1	15578	15578		0.79363	0	1		+		10979	13909	6349	6390	10600	10600					-0.18706831022848291
FNLEEVLQE	9	Unmodified	_FNLEEVLQE_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MSMS	HCT116MG_D190212_S2	2	560.673828125	2	560.779679	1119.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.55	1	40.48	39.98	40.98	-0.069626								0	0	0	0.64932	1	15295	15295		21.537	7.6309	1				10980	4956	6350	6391	10601	10601					-0.010185883474150614
FNLKKKFEK	9	Unmodified	_FNLKKKFEK_					0	0	0			REV__nc|ENSG00000149657|Q9BX40-2|LSM14B	REV__nc|ENSG00000149657|Q9BX40-2|LSM14B	MSMS	HCT116MG_D190212_S1	1	591.3572998046875	2	591.355691	1180.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.399	1	52.399	51.899	52.899	0								0	0	0	0.76923	1	20041	20041		3.5965	0.60125	1		+		10981	12572	6351	6392	10602	10602					0.1137085719078641
FNLKKKFEK	9	Unmodified	_FNLKKKFEK_					0	0	0			REV__nc|ENSG00000149657|Q9BX40-2|LSM14B	REV__nc|ENSG00000149657|Q9BX40-2|LSM14B	MSMS	HCT116MG_D190212_S1	1	591.357177734375	2	591.355691	1180.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.892	1	53.892	53.392	54.392	0								0	0	0	0.76913	1	20651	20651		3.9444	0.3479	1		+		10982	12572	6351	6392	10603	10603					0.1137085719078641
FNNLRLRWQRL	11	Unmodified	_FNNLRLRWQRL_					0	0	0			REV__ENST00000581721.5_1_17:28811254-28811693:+|nuORF	REV__ENST00000581721.5_1_17:28811254-28811693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	758.439208984375	2	758.436401	1514.85825	0.71915	0.00054543	0.78879	0.00059825	1.5079	0.0011437	758.4385957960836	61.541	1.2463	61.541	61.158	62.404	0					88	23	5	0	0	0	0.74191	1	23786	23786		0.30703	0.03801	1	7932300	+		10983	16627	6352	6393	10604	10604					0.12141419276576926
FNQSSQLQI	9	Unmodified	_FNQSSQLQI_					0	0	0		ZNF234|p.R470Q|1|0.23|ENSG00000263002|chr19:44157425-44157425|G/A|missense_variant	ZNF234|p.R470Q|1|0.23|ENSG00000263002|chr19:44157425-44157425|G/A|missense_variant	ZNF234|p.R470Q|1|0.23|ENSG00000263002|chr19:44157425-44157425|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	532.7723999023438	2	532.772188	1063.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.153	1	43.153	42.653	43.653	0								0	0	0	0.76669	1	16295	16295		12.532	0	1				10984	18721	6353	6394	10605	10605					0.0005996457523451681
FNRHQKIHT	9	Unmodified	_FNRHQKIHT_					0	0	0		ENSG00000197863|ENST00000356725|ZNF790;ZNF790|p.I582Nfs*3|1|0.34|ENSG00000197863|chr19:36818599-36818600|-/T|frameshift_variant	ENSG00000197863|ENST00000356725|ZNF790	ENSG00000197863|ENST00000356725|ZNF790	MSMS	HCT116MG_D190212_S2	2	394.2165832519531	3	394.215984	1179.62612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.205	1	59.04	58.54	59.54	-0.1653								0	0	0	0.77008	1	22894	22894		0.26902	0.033176	1				10985	6182	6354	6395	10606	10606					0.043495769258242944
FNRRYGQIHQK	11	Unmodified	_FNRRYGQIHQK_					0	0	0			REV__nc|ENSG00000110328|Q6P9A2-2|GALNT18	REV__nc|ENSG00000110328|Q6P9A2-2|GALNT18	MULTI-MSMS	HCT116MG_D190212_S1	1	724.3908081054688	2	723.889284	1445.76401	0.52834	0.00038246	1.642	0.0011886	2.1704	0.0015711	724.3921655350888	39.02	0.3115	39.02	38.8	39.111	0					12	5	4	0	0	0	0.73536	1	14648	14648		8.7454	0.58988	1	14560000	+		10986	16274	6355	6396	10607	10607					0.058962804544535175
FNSILLLLPP	10	Unmodified	_FNSILLLLPP_					0	0	0			REV__ENST00000271843.8_1_1:153946752-153946992:-|nuORF	REV__ENST00000271843.8_1_1:153946752-153946992:-|nuORF	MSMS	HCT116MG_D190212_S3	3	376.2330322265625	3	376.23387	1125.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.049	1	56.77	56.27	57.27	-0.27913								0	0	0	0.96836	1	21671	21671		0.62683	0.48693	1		+		10987	14696	6356	6397	10608	10608					0.12196936584996365
FNSRIRVKRR	10	Unmodified	_FNSRIRVKRR_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	HCT116MG_D190212_S1	1	667.177001953125	2	666.410186	1330.80582	0.63003	0.00041986	1.3247	0.0008828	1.9547	0.0013027	666.4107990661322	60.962	1.5018	60.962	60.85	62.352	0					41	28	2	0	0	0	0.31179	1	23992	23992		1.4819	1.0236	1	11404000	+		10988	12276	6357	6398	10609	10609					0.15364880933657332
FNSVGAGRP	9	Unmodified	_FNSVGAGRP_					0	0	0			REV__nc|ENSG00000060656|Q92729|PTPRU	REV__nc|ENSG00000060656|Q92729|PTPRU	MULTI-MSMS	HCT116MG_D190212_S3	3	452.73529052734375	2	452.735409	903.456264	-0.052799	-2.3904E-05	0.28917	0.00013092	0.23637	0.00010701	452.7354549188277	17.895	1.3532	17.976	17.482	18.835	0.081358					70	25	4	0	0	0	0.19461	1	5921	5921		41.84	12.758	1	115800000	+		10989	17072	6358	6399	10610	10610					0.0006746092343519194
FNSVGAGRP	9	Unmodified	_FNSVGAGRP_					0	0	0			REV__nc|ENSG00000060656|Q92729|PTPRU	REV__nc|ENSG00000060656|Q92729|PTPRU	MULTI-MSMS	HCT116MG_D190212_S3	3	904.4644165039062	1	904.463541	903.456264	0.49486	0.00044759	0.35572	0.00032173	0.85058	0.00076932	904.4638622828637	17.895	0.52041	17.976	17.585	18.106	0.081358					15	9	2	0	0	0	0.24895	1	5961	5961		36.127	2.0246	1	5113700	+		10990	17072	6358	6399	10611	10611					0.0006746092343519194
FNSVGAGRP	9	Unmodified	_FNSVGAGRP_					0	0	0			REV__nc|ENSG00000060656|Q92729|PTPRU	REV__nc|ENSG00000060656|Q92729|PTPRU	MULTI-MSMS	HCT116MG_D190212_S4	4	904.46484375	1	904.463541	903.456264	0.55121	0.00049855	0.075438	6.8231E-05	0.62664	0.00056678	904.4636603461747	18.111	0.56938	17.936	17.636	18.205	-0.17501					15	10	2	0	0	0	0.31596	1	6024	6024		29.082	2.1979	1	2468600	+		10991	17072	6358	6399	10612	10612					0.0006746092343519194
FNSVGAGRP	9	Unmodified	_FNSVGAGRP_					0	0	0			REV__nc|ENSG00000060656|Q92729|PTPRU	REV__nc|ENSG00000060656|Q92729|PTPRU	MULTI-MATCH	HCT116MG_D190212_S2	2		1	904.463541	903.456264	0.36813	0.00033296	0.37929	0.00034306	0.74742	0.00067602	904.4638547651651	18.633	0.41664	18.27	17.956	18.373	-0.36325	0.20939	9.6769E-05	NaN	36.127	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7431200	+		10992	17072	6358	6399							0.0006746092343519194
FNSVGAGRP	9	Unmodified	_FNSVGAGRP_					0	0	0			REV__nc|ENSG00000060656|Q92729|PTPRU	REV__nc|ENSG00000060656|Q92729|PTPRU	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	452.735409	903.456264	-0.29464	-0.00013339	0.61088	0.00027657	0.31624	0.00014318	452.73558151001464	18.607	0.83431	18.244	17.904	18.738	-0.36325	0.099778	0.00022484	NaN	41.84	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50458000	+		10993	17072	6358	6399							0.0006746092343519194
FNSVGAGRP	9	Unmodified	_FNSVGAGRP_					0	0	0			REV__nc|ENSG00000060656|Q92729|PTPRU	REV__nc|ENSG00000060656|Q92729|PTPRU	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	904.463541	903.456264	0.49486	0.00044759	0.35572	0.00032173	0.85058	0.00076932	904.4638622828637	17.895	0.52041	17.976	17.585	18.106	0.081358	-0.084774	7.5445E-05	NaN	36.127	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5113700	+		10994	17072	6358	6399							0.0006746092343519194
FNSVGAGRP	9	Unmodified	_FNSVGAGRP_					0	0	0			REV__nc|ENSG00000060656|Q92729|PTPRU	REV__nc|ENSG00000060656|Q92729|PTPRU	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	452.735409	903.456264	-0.052799	-2.3904E-05	0.28917	0.00013092	0.23637	0.00010701	452.7354549188277	17.895	1.3532	17.976	17.482	18.835	0.081358	-0.16781	-6.6469E-05	NaN	41.84	70	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115800000	+		10995	17072	6358	6399							0.0006746092343519194
FNSVGAGRP	9	Unmodified	_FNSVGAGRP_					0	0	0			REV__nc|ENSG00000060656|Q92729|PTPRU	REV__nc|ENSG00000060656|Q92729|PTPRU	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	904.463541	903.456264	0.55121	0.00049855	0.075438	6.8231E-05	0.62664	0.00056678	904.4636603461747	18.111	0.56938	17.936	17.636	18.205	-0.17501	-0.12461	-0.00017806	NaN	36.127	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2468600	+		10996	17072	6358	6399							0.0006746092343519194
FNTPTAVQKEE	11	Unmodified	_FNTPTAVQKEE_					0	0	0		ITM2A|p.N175Ifs*3|1|0.08|ENSG00000078596|chrX:79362609-79362609|T/-|frameshift_variant;nc|ENSG00000078596|O43736-2|ITM2A;ENSG00000078596|ENST00000373298|ITM2A	ITM2A|p.N175Ifs*3|1|0.08|ENSG00000078596|chrX:79362609-79362609|T/-|frameshift_variant	ITM2A|p.N175Ifs*3|1|0.08|ENSG00000078596|chrX:79362609-79362609|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	632.3126220703125	2	632.314417	1262.61428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.022	1	41.72	41.22	42.22	-0.30257								0	0	0	0.94145	1	15641	15641		10.8	1.4164	1				10997	1368	6359	6400	10613	10613					-0.006521293986452292
FNYDYFYKNYE	11	Unmodified	_FNYDYFYKNYE_					0	0	0		tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	783.3345947265625	2	783.332807	1564.65106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.378	1	31.129	30.629	31.629	-0.24883								0	0	0	0.95686	1	11572	11572		2.7352	1.4057	1				10998	18466	6360	6401	10614	10614					-0.10867877572763973
FPAGTCAC	8	Unmodified	_FPAGTCAC_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MSMS	HCT116MG_D190212_S3	3	385.1530456542969	2	385.154017	768.293481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2799	1	5.2974	4.7974	5.7974	0.017489								0	0	0	0.8837	1	1595	1595		0.79363	0	1				10999	6551	6361	6402	10615	10615					-0.09993381794447487
FPDERLHTRQH	11	Unmodified	_FPDERLHTRQH_					0	0	0			REV__ENSG00000102870|ENST00000262525|ZNF629	REV__ENSG00000102870|ENST00000262525|ZNF629	MULTI-SECPEP	HCT116MG_D190212_S1	1	718.8236083984375	2	718.363099	1434.71164	0.97639	0.0007014	-2.7864	-0.0020016	-1.81	-0.0013002	718.3608391219406	17.349	0.20874	17.349	17.202	17.411	0					5	3	2	0	0	0	0.36495	1	5883	5883		1.1933	0	1	1864000	+		11000	11165	6362	6403	10616	10616					0.011676973208295749
FPDLRRFL	8	Unmodified	_FPDLRRFL_					0	0	0			REV__USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	REV__USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	532.2802734375	2	532.306001	1062.59745	0.41177	0.00021919	-1.1261	-0.00059943	-0.71434	-0.00038025	532.3053424492321	54.145	0.15448	53.956	53.842	53.996	-0.1894					4	2	2	0	0	0	0.31855	1	20804	20804		13.508	1.8676	1	12480000	+		11001	10594	6363	6404	10617	10617					0.06865459296705012
FPEPNSFRPAR	11	Unmodified	_FPEPNSFRPAR_					0	0	0		CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant;ENSG00000111012|ENST00000228606|CYP27B1	CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant	CYP27B1|p.H441Tfs*33|2|0.49|ENSG00000111012|chr12:57763703-57763703|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	659.373291015625	2	659.338561	1316.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.59	1	39.512	39.012	40.012	-0.077835								0	0	0	0.94538	1	14905	14905		8.7454	1.1365	1				11002	628	6364	6405	10618	10618					0.01690409031903073
FPGDPGPPGPA	11	Unmodified	_FPGDPGPPGPA_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;COL5A3|p.P1048Lfs*96|1|0.25|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MSMS	HCT116MG_D190212_S4	4	504.74114990234375	2	504.742899	1007.47125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.027	1	21.799	21.299	22.299	-0.22777								0	0	0	0.82946	1	7639	7639		29.082	9.8246	1				11003	1396	6365	6406	10619	10619					-0.032190919992331146
FPGEGGAA	8	Unmodified	_FPGEGGAA_					0	0	0			REV__nc|ENSG00000168502|Q9Y4B5-4|MTCL1	REV__nc|ENSG00000168502|Q9Y4B5-4|MTCL1	MULTI-MSMS	HCT116MG_D190212_S3	3	705.3204956054688	1	705.320231	704.312954	0.48341	0.00034096	-0.13964	-9.8491E-05	0.34377	0.00024247	705.3200138173991	36.472	0.41619	36.171	35.885	36.301	-0.30113					10	7	2	0	0	0	0.60268	1	13464	13464		32.117	7.4431	1	3811700	+		11004	13203	6366	6407	10620	10620					-0.0510296618766688
FPGLDDAVLL	10	Unmodified	_FPGLDDAVLL_					0	0	0			REV__ENST00000472019.5_1_2:220147533-220150716:+|nuORF	REV__ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MSMS	HCT116MG_D190212_S4	4	530.2897338867188	2	530.289682	1058.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.315	1	53.991	53.491	54.491	-0.32349								0	0	0	0.92272	1	20305	20305		10.824	0	1		+		11005	15879	6367	6408	10621	10621					0.037872073831977104
FPGLWLLVSLV	11	Unmodified	_FPGLWLLVSLV_					0	0	0			REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P	REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P	MSMS	HCT116MG_D190212_S4	4	415.2536315917969	3	415.253154	1242.73763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.904	1	38.523	38.023	39.023	-0.38163								0	0	0	0.95925	1	14275	14275		0.50596	0	1		+		11006	17137	6368	6409	10622	10622					0.12597198510411545
FPGRKRRRRRR	11	Unmodified	_FPGRKRRRRRR_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	770.9847412109375	2	770.98525	1539.95595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.177	1	23.177	22.677	23.677	0								0	0	0	0.96208	1	8242	8242		0	0	1				11007	9466	6369	6410	10623	10623					0.20756665715930467
FPGSGWSP	8	Unmodified	_FPGSGWSP_					0	0	0			REV__ENST00000341901.4_1_16:28333672-28333813:+|nuORF	REV__ENST00000341901.4_1_16:28333672-28333813:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	834.37890625	1	834.37808	833.370804	0.75315	0.00062842	0.40406	0.00033714	1.1572	0.00096556	834.3782986695024	42.162	0.25835	42.094	41.964	42.223	-0.068199					8	4	2	0	0	0	0.6854	1	15978	15978		24.674	3.8027	1	16368000	+		11008	14978	6370	6411	10624	10624					-0.052547042622450135
FPHVVVLRP	9	Unmodified	_FPHVVVLRP_					0	0	0			REV__LRP2|p.S830L|1|0.51|ENSG00000081479|chr2:169259049-169259049|G/A|missense_variant	REV__LRP2|p.S830L|1|0.51|ENSG00000081479|chr2:169259049-169259049|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	355.2195129394531	3	355.218555	1062.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.717	1	43.411	42.911	43.911	-0.30616								0	0	0	0.7694	1	16321	16321		2.9952	1.8019	1		+		11009	16985	6371	6412	10625	10625					0.10502336193394513
FPINYPQP	8	Unmodified	_FPINYPQP_					0	0	0		ENST00000322610.12_2_16:28885267-28885429:+|nuORF	ENST00000322610.12_2_16:28885267-28885429:+|nuORF	ENST00000322610.12_2_16:28885267-28885429:+|nuORF	MSMS	HCT116MG_D190212_S4	4	487.7611083984375	2	488.25036	974.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.092	1	28.751	28.251	29.251	-0.34059								0	0	0	0.8837	1	10491	10491		14.582	1.0738	1				11010	7112	6372	6413	10626	10626					-0.0020960013124522447
FPLESSQMLE	10	Unmodified	_FPLESSQMLE_					0	0	0			REV__ENSG00000157483|ENST00000288235|MYO1E	REV__ENSG00000157483|ENST00000288235|MYO1E	MSMS	HCT116MG_D190212_S1	1	590.779541015625	2	590.781364	1179.54818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.101	1	33.101	32.601	33.601	0								0	0	0	0.92607	1	12238	12238		10.074	1.3285	1		+		11011	12753	6373	6414	10627	10627					-0.03441661565057075
FPLKKLMA	8	Unmodified	_FPLKKLMA_					0	0	0		SENP6|p.F580Lfs*72|2|0.17|ENSG00000112701|chr6:75677142-75677142|T/-|frameshift_variant	SENP6|p.F580Lfs*72|2|0.17|ENSG00000112701|chr6:75677142-75677142|T/-|frameshift_variant	SENP6|p.F580Lfs*72|2|0.17|ENSG00000112701|chr6:75677142-75677142|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	474.2908630371094	2	474.290974	946.567395	0.34545	0.00016384	-0.21759	-0.0001032	0.12786	6.0645E-05	474.29074881682317	45.033	1.4052	44.724	44.265	45.67	-0.30926					63	30	3	0	0	0	0.87576	1	16725	16725		0.79363	0	1	17552000			11012	18142	6374	6415	10628	10628					0.09197384307140055
FPLKKLMA	8	Unmodified	_FPLKKLMA_					0	0	0		SENP6|p.F580Lfs*72|2|0.17|ENSG00000112701|chr6:75677142-75677142|T/-|frameshift_variant	SENP6|p.F580Lfs*72|2|0.17|ENSG00000112701|chr6:75677142-75677142|T/-|frameshift_variant	SENP6|p.F580Lfs*72|2|0.17|ENSG00000112701|chr6:75677142-75677142|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	474.29119873046875	2	474.290974	946.567395	0.38715	0.00018362	-0.26109	-0.00012383	0.12606	5.9791E-05	474.29077471414377	44.382	1.331	44.008	43.018	44.349	-0.37373					50	29	3	0	0	0	0.87576	1	16444	16444		0.79363	0	1	19958000			11013	18142	6374	6415	10629	10629					0.09197384307140055
FPLPFLIKRL	10	Unmodified	_FPLPFLIKRL_					0	0	0		ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	MSMS	HCT116MG_D190212_S4	4	622.400634765625	2	622.399902	1242.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.054	1	44.681	44.181	45.181	-0.37306								0	0	0	0.96291	1	16606	16606		1.8442	0.36234	1				11014	5963	6375	6416	10630	10630					0.1735689750128131
FPLSHHFP	8	Unmodified	_FPLSHHFP_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MSMS	HCT116MG_D190212_S3	3	491.2532653808594	2	491.250695	980.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.077	1	41.774	41.274	42.274	-0.30257								0	0	0	0.8837	1	15663	15663		11.114	1.0405	1		+		11015	10636	6376	6417	10631	10631					-0.004187606915365905
FPLVGKWP	8	Unmodified	_FPLVGKWP_					0	0	0		ENST00000319080.7_12:122630330-122630822:+|nuORF	ENST00000319080.7_12:122630330-122630822:+|nuORF	ENST00000319080.7_12:122630330-122630822:+|nuORF	MSMS	HCT116MG_D190212_S4	4	472.2757263183594	2	472.273638	942.532724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.707	1	46.336	45.836	46.836	-0.37134								0	0	0	0.8837	1	17252	17252		5.7604	0	1				11016	7094	6377	6418	10632	10632					0.059158844907074126
FPNLFPPL	8	Unmodified	_FPNLFPPL_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MSMS	HCT116MG_D190212_S4	4	472.7674560546875	2	472.765646	943.516739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.989	1	45.617	45.117	46.117	-0.37206								0	0	0	0.8837	1	16985	16985		13.508	3.3245	1				11017	4527	6378	6419	10633	10633					0.04272178253791026
FPNVLDGAFVY	11	Unmodified	_FPNVLDGAFVY_					0	0	0		tr|U7T255|U7T255_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00552PE=4SV=1	tr|U7T255|U7T255_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00552PE=4SV=1	tr|U7T255|U7T255_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00552PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	621.314208984375	2	621.313689	1240.61282	0.59713	0.000371	-0.13526	-8.4039E-05	0.46187	0.00028696	621.3135257394458	47.311	0.41342	47.189	47.026	47.439	-0.12175					13	7	3	0	0	0	0.69464	1	18050	18050		23.79	1.0535	1	57315000			11018	18565	6379	6420	10634	10634					0.0021428130326057726
FPREFCLSP	9	Unmodified	_FPREFCLSP_					0	0	0			REV__ENST00000329214.12_1_17:79639883-79639991:+|nuORF	REV__ENST00000329214.12_1_17:79639883-79639991:+|nuORF	MSMS	HCT116MG_D190212_S2	2	548.2754516601562	2	548.268227	1094.5219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.753	1	18.39	17.89	18.89	-0.36325								0	0	0	0.69648	1	6464	6464		19.257	3.1079	1		+		11019	14922	6380	6421	10635	10635					-0.02157885945871385
FPRKMRRRRRY	11	Unmodified	_FPRKMRRRRRY_					0	0	0			REV__ENSG00000183770|ENST00000648323|FOXL2	REV__ENSG00000183770|ENST00000648323|FOXL2	MSMS	HCT116MG_D190212_S1	1	811.4764404296875	2	811.475869	1620.93718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.876	1	45.876	45.376	46.376	0								0	0	0	0.96208	1	17391	17391		0	0	1		+		11020	13780	6381	6422	10636	10636					0.15155368029900274
FPRNTTLSL	9	Unmodified	_FPRNTTLSL_					0	0	0			REV__ENST00000375754.8_1_9:93658667-93658919:+|nuORF	REV__ENST00000375754.8_1_9:93658667-93658919:+|nuORF	MSMS	HCT116MG_D190212_S4	4	350.1982727050781	3	350.197708	1047.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.908	1	60.645	60.145	61.145	-0.26347								0	0	0	0.76967	1	22963	22963		1.0715	0	1		+		11021	15220	6382	6423	10637	10637					0.049411453345555856
FPRSFNNSWP	10	Unmodified	_FPRSFNNSWP_					0	0	0		ENST00000349394.5_1_12:57619789-57619912:+|nuORF	ENST00000349394.5_1_12:57619789-57619912:+|nuORF	ENST00000349394.5_1_12:57619789-57619912:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	626.2993774414062	2	626.298904	1250.58326	0.71487	0.00044772	0.0036414	2.2806E-06	0.71851	0.00045	626.2988002393151	48.867	0.25806	48.551	48.399	48.657	-0.31596					6	4	2	0	0	0	0.30526	1	18413	18413		10.074	0	1	3877700			11022	7274	6383	6424	10638	10638					-0.03201237922235123
FPRTSPEPSPG	11	Unmodified	_FPRTSPEPSPG_					0	0	0			REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	585.78955078125	2	586.290745	1170.56694	0.35389	0.00020748	0.45821	0.00026864	0.81209	0.00047612	586.2910053446559	26.456	0.31195	26.156	26.026	26.338	-0.30087					8	5	2	0	0	0	0.36112	1	9427	9427		15.248	2.206	1	16002000	+		11023	11465	6384	6425	10639	10639					-0.011523638790094992
FPSGPVNKTL	10	Unmodified	_FPSGPVNKTL_					0	0	0			REV__tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	REV__tr|U7SUU1|U7SUU1_FUSNUCDP-diacylglycerol--serineO-phosphatidyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01007PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	530.2977294921875	2	530.295299	1058.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.306	1	51.127	50.627	51.627	-0.17868								0	0	0	0.85468	1	19682	19682		21.747	4.8044	1		+		11024	17834	6385	6426	10640	10640					0.049100294773325004
FPSNLVVAA	9	Unmodified	_FPSNLVVAA_					0	0	0		ENST00000493121.5_1_2:65228585-65238638:+|nuORF;ENSG00000115902|ENST00000234256|SLC1A4	ENST00000493121.5_1_2:65228585-65238638:+|nuORF	ENST00000493121.5_1_2:65228585-65238638:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	917.4768676757812	1	917.509094	916.501818	0.7915	0.00072621	-0.98635	-0.00090498	-0.19484	-0.00017877	917.5075911397096	56.451	0.15558	56.268	56.156	56.312	-0.18261					4	2	2	0	0	0	0.2025	1	21751	21751		19.257	0	1	3169600			11025	2491	6386	6427	10641	10641					0.0402268638579244
FPTHCTDVREL	11	Unmodified	_FPTHCTDVREL_					0	0	0			REV__MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	REV__MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	659.3152465820312	2	659.316437	1316.61832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.42	1	53.42	52.92	53.92	0								0	0	0	0.92983	1	20458	20458		16.149	6.0752	1		+		11026	11570	6387	6428	10642	10642					-0.02732363176596664
FPTLKFLN	8	Unmodified	_FPTLKFLN_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MSMS	HCT116MG_D190212_S4	4	490.2859191894531	2	490.284203	978.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.327	1	34.941	34.441	35.441	-0.38606								0	0	0	0.8837	1	12934	12934		5.7604	0	1		+		11027	12057	6388	6429	10643	10643					0.06371849799563734
FPTTRLGAESQ	11	Unmodified	_FPTTRLGAESQ_					0	0	0		ENSG00000117016|ENST00000372684|RIMS3	ENSG00000117016|ENST00000372684|RIMS3	ENSG00000117016|ENST00000372684|RIMS3	MSMS	HCT116MG_D190212_S2	2	603.8116455078125	2	603.809302	1205.60405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.988	1	56.809	56.309	57.309	-0.17904								0	0	0	0.94269	1	21996	21996		10.151	0.76745	1				11028	2554	6389	6430	10644	10644					0.009473076667518399
FPYENGIHQH	10	Unmodified	_FPYENGIHQH_					0	0	0		nc|ENSG00000169064|A8MT70-3|ZBBX;nc|ENSG00000169064|A8MT70|ZBBX;ENSG00000169064|ENST00000675490|ZBBX	nc|ENSG00000169064|A8MT70-3|ZBBX	nc|ENSG00000169064|A8MT70-3|ZBBX	MSMS	HCT116MG_D190212_S2	2	621.3501586914062	2	621.288537	1240.56252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.405	1	45.313	44.813	45.813	-0.092472								0	0	0	0.93854	1	17266	17266		7.2892	1.0834	1				11029	5048	6390	6431	10645	10645					-0.048138283018943184
FPYLDQFL	8	Unmodified	_FPYLDQFL_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-MSMS	HCT116MG_D190212_S1	1	521.7654418945312	2	521.765843	1041.51713	-0.51057	-0.0002664	-0.60504	-0.00031569	-1.1156	-0.00058209	521.76550398155	38.201	0.26018	38.201	38.019	38.279	0					9	4	3	0	0	0	0.8029	1	14311	14311		11.114	1.767	1	10232000	+		11030	13076	6391	6432	10646	10646					-0.00196446817017204
FPYTNHRTNP	10	Unmodified	_FPYTNHRTNP_					0	0	0		ENST00000531428.1_1_11:17167258-17229399:-|nuORF;nc|ENSG00000011405|O00443-2|PIK3C2A;PIK3C2A|p.G828Dfs*7|1|0.08|ENSG00000011405|chr11:17122732-17122732|T/-|frameshift_variant;ENSG00000011405|ENST00000691414|PIK3C2A	ENST00000531428.1_1_11:17167258-17229399:-|nuORF	ENST00000531428.1_1_11:17167258-17229399:-|nuORF	MSMS	HCT116MG_D190212_S4	4	623.8001708984375	2	623.801811	1245.58907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.134	1	39.755	39.255	40.255	-0.37936								0	0	0	0.91638	1	14713	14713		12.241	0.74595	1				11031	893	6392	6433	10647	10647					-0.023901394105678264
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	HCT116MG_D190212_S2	2	1015.5468139648438	1	1015.54587	1014.5386	0.61067	0.00062016	-0.52779	-0.000536	0.082877	8.4166E-05	1015.5458690673851	53.748	0.31004	53.558	53.377	53.687	-0.1894					12	5	3	0	0	0	0.0038512	1	20686	20686		152.89	71.273	1	28460000			11032	2782	6393	6434	10648	10648					0.03190938211696448
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2762145996094	2	508.276575	1014.5386	0.26953	0.000137	-0.16272	-8.2704E-05	0.10682	5.4293E-05	508.2764273892571	53.748	0.41309	53.558	53.377	53.79	-0.1894					11	7	2	0	0	0	0.016744	1	20687	20687		99.755	55.897	1	17166000			11033	2782	6393	6434	10649	10649					0.03190938211696448
FQEGLLRV	8	Unmodified	_FQEGLLRV_					0	0	0		STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant	STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	481.2763671875	2	481.276909	960.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.239	1	40.862	40.362	41.362	-0.37732								0	0	0	0.8837	1	15159	15159		13.508	1.8676	1				11034	6556	6394	6435	10650	10650					0.05741777651417124
FQERSLTRVS	10	Unmodified	_FQERSLTRVS_					0	0	0		ENST00000545729.5_1_12:26092425-26109253:-|nuORF;ENST00000500276.6_1_12:26108085-26109253:-|nuORF	ENST00000545729.5_1_12:26092425-26109253:-|nuORF	ENST00000545729.5_1_12:26092425-26109253:-|nuORF	MSMS	HCT116MG_D190212_S4	4	408.22283935546875	3	408.222805	1221.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.418	1	59.14	58.64	59.64	-0.27731								0	0	0	0.95507	1	22358	22358		1.7423	0	1				11035	8420	6395	6436	10651	10651					0.044627027949900366
FQEVREILHNL	11	Unmodified	_FQEVREILHNL_					0	0	0		DNAH17|p.I768F|1|0.21|ENSG00000187775|chr17:78551624-78551624|T/A|missense_variant	DNAH17|p.I768F|1|0.21|ENSG00000187775|chr17:78551624-78551624|T/A|missense_variant	DNAH17|p.I768F|1|0.21|ENSG00000187775|chr17:78551624-78551624|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	699.3809814453125	2	699.380426	1396.7463	0.81334	0.00056883	-0.27332	-0.00019116	0.54001	0.00037768	699.3803055279421	45.581	0.26133	45.581	45.399	45.66	0					7	4	2	0	0	0	0.72004	1	17300	17300		14.405	2.9107	1	18541000			11036	701	6396	6437	10652	10652					0.06379520408972894
FQIKGFRFL	9	Unmodified	_FQIKGFRFL_					0	0	0		HSF5|p.H238Lfs*84|1|0.04|ENSG00000176160|chr17:58480102-58480105|GGAT/-|frameshift_variant	HSF5|p.H238Lfs*84|1|0.04|ENSG00000176160|chr17:58480102-58480105|GGAT/-|frameshift_variant	HSF5|p.H238Lfs*84|1|0.04|ENSG00000176160|chr17:58480102-58480105|GGAT/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	578.305908203125	2	578.337301	1154.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.875	1	46.561	46.061	47.061	-0.31405								0	0	0	0.76718	1	17588	17588		10.824	3.5347	1				11037	9229	6397	6438	10653	10653					0.08890605364899784
FQLYFNPHL	9	Unmodified	_FQLYFNPHL_					0	0	0		nc|ENSG00000099958|Q96Q80-3|DERL3;ENST00000464110.1_1_22:24179249-24180975:-|nuORF;nc|ENSG00000099958|Q96Q80-5|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3;ENST00000290730.11_1_22:24179058-24180975:-|nuORF	nc|ENSG00000099958|Q96Q80-3|DERL3	nc|ENSG00000099958|Q96Q80-3|DERL3	MULTI-MSMS	HCT116MG_D190212_S1	1	393.5375061035156	3	393.537953	1177.59203	-0.021223	-8.352E-06	-0.77137	-0.00030356	-0.7926	-0.00031192	393.53757112512466	14.728	0.15602	14.728	14.65	14.806	0					6	2	3	0	0	0	0.74258	1	4870	4870		1.1933	0.41681	1	2873500			11038	9403	6398	6439	10654	10654					0.010337357142589099
FQMLHYKKLLE	11	Unmodified	_FQMLHYKKLLE_					0	0	0			REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-SECPEP	HCT116MG_D190212_S1	1	483.9690246582031	3	483.935607	1448.78499	0.023097	1.1178E-05	0.16619	8.0427E-05	0.18929	9.1604E-05	483.9359107032401	50.869	0.362	50.869	50.678	51.04	0					10	6	2	0	0	0	0.36598	1	19464	19464		1.2148	0	1	21223000	+		11039	11835	6399	6440	10655	10655					0.07855109719093889
FQNALLVR	8	Unmodified	_FQNALLVR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	480.7848205566406	2	480.784902	959.55525	-0.097766	-4.7004E-05	-0.56229	-0.00027034	-0.66005	-0.00031734	480.7845853309662	40.409	0.31072	40.409	40.228	40.539	0					8	5	2	0	0	0	0.036086	1	15193	15193		139.54	0	1	36955000		+	11040	554	6400	6441	10656	10656					0.0738548388833351
FQNALLVR	8	Unmodified	_FQNALLVR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S2	2	480.7850341796875	2	480.784902	959.55525	0.36138	0.00017375	0.143	6.8753E-05	0.50438	0.0002425	480.7850479006386	40.447	0.25885	40.378	40.209	40.468	-0.069626					8	4	2	0	0	0	0.060005	1	15265	15265		112.59	0	1	19531000		+	11041	554	6400	6441	10657	10657					0.0738548388833351
FQNALLVR	8	Unmodified	_FQNALLVR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	480.78466796875	2	480.784902	959.55525	0.33323	0.00016021	-0.062146	-2.9879E-05	0.27109	0.00013033	480.7847463433162	40.694	0.78147	40.393	40.111	40.893	-0.30161					22	14	3	0	0	0	0.012848	1	15102	15102		188.08	0	1	19039000		+	11042	554	6400	6441	10658	10658					0.0738548388833351
FQNALLVR	8	Unmodified	_FQNALLVR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	480.78515625	2	480.784902	959.55525	0.30053	0.00014449	0.084063	4.0416E-05	0.38459	0.00018491	480.7848290248172	40.77	0.62437	40.392	40.13	40.755	-0.37828					21	12	3	0	0	0	0.036086	1	14960	14960		139.54	0	1	25017000		+	11043	554	6400	6441	10659	10659					0.0738548388833351
FQPRLRPRRLS	11	Unmodified	_FQPRLRPRRLS_					0	0	0		ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	MSMS	HCT116MG_D190212_S1	1	713.4324951171875	2	713.431119	1424.84768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.574	1	62.574	62.074	63.074	0								0	0	0	0.96149	1	24165	24165		0.30703	0	1				11044	5097	6401	6442	10660	10660					0.1522543662215412
FQSQSSHEEF	10	Unmodified	_FQSQSSHEEF_					0	0	0		CNKSR2|p.S736F|1|0.08|ENSG00000149970|chrX:21609132-21609132|C/T|missense_variant	CNKSR2|p.S736F|1|0.08|ENSG00000149970|chrX:21609132-21609132|C/T|missense_variant	CNKSR2|p.S736F|1|0.08|ENSG00000149970|chrX:21609132-21609132|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	409.1741943359375	3	409.17552	1224.50473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.033	1	39.96	39.46	40.46	-0.072838								0	0	0	0.95507	1	15086	15086		1.7423	0	1				11045	494	6402	6443	10661	10661					-0.09854135017985755
FQVKLLYRMR	10	Unmodified	_FQVKLLYRMR_					0	0	0			REV__ENSG00000129484|ENST00000429687|PARP2	REV__ENSG00000129484|ENST00000429687|PARP2	MULTI-MSMS	HCT116MG_D190212_S1	1	677.3955078125	2	677.394825	1352.7751	0.58272	0.00039473	0.51484	0.00034875	1.0976	0.00074348	677.3950718660543	51.26	0.92847	51.26	50.523	51.451	0					58	17	5	0	0	0	0.88823	1	19589	19589		1.4819	0	1	92971000	+		11046	11893	6403	6444	10662	10662					0.112819665043844
FQVKLLYRMR	10	Unmodified	_FQVKLLYRMR_					0	0	0			REV__ENSG00000129484|ENST00000429687|PARP2	REV__ENSG00000129484|ENST00000429687|PARP2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	677.394825	1352.7751	0.58272	0.00039473	0.51484	0.00034875	1.0976	0.00074348	677.3950718660543	51.26	0.92847	51.26	50.523	51.451	0	0	0	NaN	1.4819	58	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92971000	+		11047	11893	6403	6444							0.112819665043844
FQYTAPKQP	9	Unmodified	_FQYTAPKQP_					0	0	0		nc|ENSG00000119321|Q5T1M5-3|FKBP15;FKBP15|p.K665Rfs*9|2|0.21|ENSG00000119321|chr9:113178722-113178722|T/-|frameshift_variant;nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15;ENST00000462889.1_1_9:115969493-115983538:-|nuORF	nc|ENSG00000119321|Q5T1M5-3|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	MSMS	HCT116MG_D190212_S4	4	540.2783813476562	2	540.279649	1078.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.875	1	25.585	25.085	26.085	-0.29022								0	0	0	0.74083	1	9191	9191		17.113	5.4726	1				11048	2632	6404	6445	10663	10663					0.00861456443226416
FRDVEAQPRLW	11	Unmodified	_FRDVEAQPRLW_					0	0	0			REV__TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant	REV__TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	708.8707885742188	2	708.872768	1415.73098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.073	1	32.691	32.191	33.191	-0.38223								0	0	0	0.93607	1	12065	12065		13.615	4.8695	1		+		11049	13201	6405	6446	10664	10664					0.039746536117490905
FRFNMKQTLQP	11	Unmodified	_FRFNMKQTLQP_					0	0	0			REV__ENST00000467774.1_1_1:40312772-40313274:-|nuORF	REV__ENST00000467774.1_1_1:40312772-40313274:-|nuORF	MSMS	HCT116MG_D190212_S2	2	470.58526611328125	3	470.583456	1408.72854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.495	1	54.305	53.805	54.805	-0.1894								0	0	0	0.95636	1	20982	20982		1.2148	0	1		+		11050	15837	6406	6447	10665	10665					0.04052481882445136
FRHKLGMGY	9	Unmodified	_FRHKLGMGY_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-5|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-5|SLC26A6	MSMS	HCT116MG_D190212_S3	3	370.1971130371094	3	370.195533	1107.56477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.703	1	32.418	31.918	32.918	-0.28511								0	0	0	0.7696	1	11996	11996		2.9952	1.0889	1		+		11051	14307	6407	6448	10666	10666					0.015289289022121011
FRHRRAKLRLQ	11	Unmodified	_FRHRRAKLRLQ_					0	0	0		ENST00000473467.5_1_2:74685729-74687181:+|nuORF;WBP1|p.P184Lfs*11|1|0.23|ENSG00000239779|chr2:74460416-74460416|C/-|frameshift_variant;ENST00000441673.2_1_2:74684653-74687805:+|nuORF;ENST00000452361.5_1_2:74684918-74687805:+|nuORF;ENSG00000239779|ENST00000233615|WBP1	ENST00000473467.5_1_2:74685729-74687181:+|nuORF	ENST00000473467.5_1_2:74685729-74687181:+|nuORF	MSMS	HCT116MG_D190212_S1	1	740.95703125	2	740.957835	1479.90112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.405	1	44.405	43.905	44.905	0								0	0	0	0.96003	1	16798	16798		1.0715	0.10919	1				11052	6536	6408	6449	10667	10667					0.1803623412467914
FRIVPKFKK	9	Unmodified	_FRIVPKFKK_					0	0	0		nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	MSMS	HCT116MG_D190212_S4	4	388.2540588378906	3	388.253488	1161.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.106	1	61.852	61.352	62.352	-0.25457								0	0	0	0.77018	1	23446	23446		0.26902	0	1				11053	1850	6409	6450	10668	10668					0.16423457669975505
FRKTLLASLT	10	Unmodified	_FRKTLLASLT_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF;ARAP2|p.L915Tfs*3|1|0.42|ENSG00000047365|chr4:36158739-36158740|-/T|frameshift_variant;ARAP2|p.K1224Nfs*17|1|0.28|ENSG00000047365|chr4:36124936-36124936|T/-|frameshift_variant;ARAP2|p.N1365Ifs*21|1|0.42|ENSG00000047365|chr4:36114232-36114232|T/-|frameshift_variant	ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	MSMS	HCT116MG_D190212_S1	1	575.3508911132812	2	575.353148	1148.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.395	1	53.395	52.895	53.895	0								0	0	0	0.95381	1	20447	20447		1.6526	0	1				11054	1026	6410	6451	10669	10669					0.1233455332817357
FRLKKVVKWYL	11	Unmodified	_FRLKKVVKWYL_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;ENST00000548535.1_1_12:76779917-76783618:-|nuORF	ENSG00000091039|ENST00000261183|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	MSMS	HCT116MG_D190212_S2	2	740.4647216796875	2	740.463564	1478.91258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.669	1	61.527	61.027	62.027	-0.14227								0	0	0	0.96208	1	23890	23890		0	0	1				11055	1551	6411	6452	10670	10670					0.19227618375475686
FRLKKVVKWYL	11	Unmodified	_FRLKKVVKWYL_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;ENST00000548535.1_1_12:76779917-76783618:-|nuORF	ENSG00000091039|ENST00000261183|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	MSMS	HCT116MG_D190212_S4	4	740.4644775390625	2	740.463564	1478.91258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.356	1	56.05	55.55	56.55	-0.30626								0	0	0	0.96208	1	21124	21124		0	0	1				11056	1551	6411	6452	10671	10671					0.19227618375475686
FRLKKVVKWYL	11	Unmodified	_FRLKKVVKWYL_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;ENST00000548535.1_1_12:76779917-76783618:-|nuORF	ENSG00000091039|ENST00000261183|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	MSMS	HCT116MG_D190212_S4	4	740.4647827148438	2	740.463564	1478.91258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.666	1	57.372	56.872	57.872	-0.29465								0	0	0	0.96208	1	21652	21652		0	0	1				11057	1551	6411	6452	10672	10672					0.19227618375475686
FRLRKRRL	8	Unmodified	_FRLRKRRL_					0	0	0		ENST00000378223.3_1_1:3773558-3773771:-|nuORF	ENST00000378223.3_1_1:3773558-3773771:-|nuORF	ENST00000378223.3_1_1:3773558-3773771:-|nuORF	MSMS	HCT116MG_D190212_S2	2	572.8801879882812	2	572.880533	1143.74651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.031	1	28.715	28.215	29.215	-0.31613								0	0	0	0.8837	1	10616	10616		0.69038	0.088878	1				11058	7538	6412	6453	10673	10673					0.18039029710121213
FRNFKIIYRRY	11	Unmodified	_FRNFKIIYRRY_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MSMS	HCT116MG_D190212_S1	1	788.4509887695312	2	788.448977	1574.8834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.99	1	47.99	47.49	48.49	0								0	0	0	0.9598	1	18248	18248		1.1933	0.12188	1				11059	1011	6413	6454	10674	10674					0.11895474079187807
FRNRRFKL	8	Unmodified	_FRNRRFKL_					0	0	0		ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	MSMS	HCT116MG_D190212_S2	2	568.8455200195312	2	568.843616	1135.67268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.202	1	63.08	62.58	63.58	-0.12264								0	0	0	0.8837	1	24504	24504		0.69038	0	1				11060	5867	6414	6455	10675	10675					0.11027061547792982
FRNWRRWYRSF	11	Unmodified	_FRNWRRWYRSF_					0	0	0			REV__nc|ENSG00000151067|Q13936-2|CACNA1C	REV__nc|ENSG00000151067|Q13936-2|CACNA1C	MSMS	HCT116MG_D190212_S4	4	837.4357299804688	2	837.43165	1672.84875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.497	1	55.185	54.685	55.685	-0.312								0	0	0	0.96141	1	20781	20781		0.35063	0.043601	1		+		11061	10077	6415	6456	10676	10676					0.03923650991055183
FRPKRRVV	8	Unmodified	_FRPKRRVV_					0	0	0			REV__ENST00000355451.7_1_7:44424886-44425042:-|nuORF	REV__ENST00000355451.7_1_7:44424886-44425042:-|nuORF	MSMS	HCT116MG_D190212_S1	1	529.6719970703125	2	529.34071	1056.66687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.352	1	62.352	61.852	62.852	0								0	0	0	0.8837	1	24075	24075		4.756	2.4533	1		+		11062	15038	6416	6457	10677	10677					0.14079963036124354
FRQPPRRT	8	Unmodified	_FRQPPRRT_					0	0	0			REV__ENST00000381813.4_1_2:10197463-10197871:-|nuORF	REV__ENST00000381813.4_1_2:10197463-10197871:-|nuORF	MSMS	HCT116MG_D190212_S1	1	529.3234252929688	2	529.304324	1056.5941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.932	1	56.932	56.432	57.432	0								0	0	0	0.8837	1	21897	21897		11.64	1.5664	1		+		11063	15286	6417	6458	10678	10678					0.06806209242699879
FRQWFEKYFVP	11	Unmodified	_FRQWFEKYFVP_					0	0	0		ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	MSMS	HCT116MG_D190212_S1	1	773.8931274414062	2	773.895712	1545.77687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.636	1	43.636	43.136	44.136	0								0	0	0	0.95925	1	16491	16491		1.4819	0	1				11064	5592	6418	6459	10679	10679					0.02581298793984388
FRRHGRLLLRR	11	Unmodified	_FRRHGRLLLRR_					0	0	0			REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	MSMS	HCT116MG_D190212_S2	2	740.4651489257812	2	740.465827	1478.9171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.44	1	60.286	59.786	60.786	-0.15441								0	0	0	0.96157	1	23392	23392		0.26902	0.26902	1		+		11065	14722	6419	6460	10680	10680					0.19679940361584158
FRRHGRLLLRR	11	Unmodified	_FRRHGRLLLRR_					0	0	0			REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	MSMS	HCT116MG_D190212_S3	3	740.46484375	2	740.465827	1478.9171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.442	1	59.184	58.684	59.684	-0.25832								0	0	0	0.96149	1	22636	22636		0.30703	0.30703	1		+		11066	14722	6419	6460	10681	10681					0.19679940361584158
FRRHGRLLLRR	11	Unmodified	_FRRHGRLLLRR_					0	0	0			REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	MSMS	HCT116MG_D190212_S3	3	740.46435546875	2	740.465827	1478.9171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.176	1	60.93	60.43	61.43	-0.24588								0	0	0	0.96149	1	23343	23343		0.30703	0.30703	1		+		11067	14722	6419	6460	10682	10682					0.19679940361584158
FRRHGRLLLRR	11	Unmodified	_FRRHGRLLLRR_					0	0	0			REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	MSMS	HCT116MG_D190212_S3	3	740.46533203125	2	740.465827	1478.9171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.843	1	61.604	61.104	62.104	-0.2387								0	0	0	0.96149	1	23612	23612		0.30703	0.30703	1		+		11068	14722	6419	6460	10683	10683					0.19679940361584158
FRRRSARLKQL	11	Unmodified	_FRRRSARLKQL_					0	0	0			REV__ENST00000454020.1_3_2:234756047-234763110:-|nuORF	REV__ENST00000454020.1_3_2:234756047-234763110:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	477.63116455078125	3	477.632021	1429.87423	0.23594	0.00011269	-1.8318	-0.00087494	-1.5959	-0.00076225	477.6309494123251	55.528	0.2055	55.528	55.4	55.606	0					5	3	2	0	0	0	0.74191	1	21352	21352		0.45452	0.046251	1	43610000	+		11069	11765	6420	6461	10684	10684					0.1764912551350335
FRRYKTGRY	9	Unmodified	_FRRYKTGRY_					0	0	0			REV__ENSG00000127954|ENST00000380079|STEAP4	REV__ENSG00000127954|ENST00000380079|STEAP4	MSMS	HCT116MG_D190212_S3	3	624.2365112304688	2	623.843813	1245.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.968	1	14.043	13.543	14.543	0.074899								0	0	0	0.7701	1	4465	4465		0.52476	0.12405	1		+		11070	11867	6421	6462	10685	10685					0.06006436476991439
FRTPLSLGVLL	11	Unmodified	_FRTPLSLGVLL_					0	0	0			REV__ENSG00000204882|ENST00000377741|GPR20	REV__ENSG00000204882|ENST00000377741|GPR20	MSMS	HCT116MG_D190212_S1	1	405.9189453125	3	405.920174	1214.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.576	1	20.576	20.076	21.076	0								0	0	0	0.95705	1	7198	7198		2.6312	0.54523	1		+		11071	14211	6422	6463	10686	10686					0.13991412879363452
FRVLWVRRERW	11	Unmodified	_FRVLWVRRERW_					0	0	0		ENST00000503969.5_1_5:76414257-76443501:+|nuORF	ENST00000503969.5_1_5:76414257-76443501:+|nuORF	ENST00000503969.5_1_5:76414257-76443501:+|nuORF	MSMS	HCT116MG_D190212_S1	1	801.9599609375	2	801.960043	1601.90553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.63	1	42.63	42.13	43.13	0								0	0	0	0.95686	1	16084	16084		2.7352	2.4282	1				11072	8438	6423	6464	10687	10687					0.12865698547602733
FRVRGHRW	8	Unmodified	_FRVRGHRW_					0	0	0			REV__ENST00000453922.1_3_10:6008176-6019154:-|nuORF	REV__ENST00000453922.1_3_10:6008176-6019154:-|nuORF	MSMS	HCT116MG_D190212_S1	1	371.87762451171875	3	371.877415	1112.61041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.071	1	12.071	11.571	12.571	0								0	0	0	0.8837	1	3849	3849		0	0	1		+		11073	15729	6424	6465	10688	10688					0.058613351994836194
FRVRGHRW	8	Unmodified	_FRVRGHRW_					0	0	0			REV__ENST00000453922.1_3_10:6008176-6019154:-|nuORF	REV__ENST00000453922.1_3_10:6008176-6019154:-|nuORF	MSMS	HCT116MG_D190212_S1	1	371.8773193359375	3	371.877415	1112.61041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.599	1	12.599	12.099	13.099	0								0	0	0	0.8837	1	4052	4052		0	0	1		+		11074	15729	6424	6465	10689	10689					0.058613351994836194
FRVRGHRW	8	Unmodified	_FRVRGHRW_					0	0	0			REV__ENST00000453922.1_3_10:6008176-6019154:-|nuORF	REV__ENST00000453922.1_3_10:6008176-6019154:-|nuORF	MSMS	HCT116MG_D190212_S1	1	371.8775634765625	3	371.877415	1112.61041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.191	1	13.191	12.691	13.691	0								0	0	0	0.8837	1	4273	4273		0	0	1		+		11075	15729	6424	6465	10690	10690					0.058613351994836194
FRWMRLRIRRM	11	Unmodified	_FRWMRLRIRRM_					0	0	0		MGAT5|p.K403Nfs*4|1|0.39|ENSG00000152127|chr2:134349898-134349898|A/-|frameshift_variant;ENSG00000152127|ENST00000281923|MGAT5	MGAT5|p.K403Nfs*4|1|0.39|ENSG00000152127|chr2:134349898-134349898|A/-|frameshift_variant	MGAT5|p.K403Nfs*4|1|0.39|ENSG00000152127|chr2:134349898-134349898|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	540.9786376953125	3	540.978258	1619.91294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.371	1	12.371	11.871	12.871	0								0	0	0	0.96208	1	3966	3966		0	0	1				11076	4135	6425	6466	10691	10691					0.1277839155197853
FRWRLFYFNFF	11	Unmodified	_FRWRLFYFNFF_					0	0	0			REV__AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|21|3|anti-sense	REV__AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|21|3|anti-sense	MSMS	HCT116MG_D190212_S1	1	821.9192504882812	2	821.919521	1641.82449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.539	1	29.539	29.039	30.039	0								0	0	0	0.9619	1	10800	10800		0.35063	0	1		+		11077	9924	6426	6467	10692	10692					0.029249977848166964
FSAHWVRI	8	Unmodified	_FSAHWVRI_					0	0	0		ENST00000565934.1_1_16:8943287-8943768:+|nuORF	ENST00000565934.1_1_16:8943287-8943768:+|nuORF	ENST00000565934.1_1_16:8943287-8943768:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.2765197753906	2	508.277244	1014.53993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.869	1	40.492	39.992	40.992	-0.37741								0	0	0	0.8217	1	15010	15010		20.871	2.7362	1				11078	8860	6427	6468	10693	10693					0.03324617091129767
FSCDCTLE	8	Unmodified	_FSCDCTLE_					0	0	0		ENST00000517465.1_1_8:103270587-103274193:-|nuORF	ENST00000517465.1_1_8:103270587-103274193:-|nuORF	ENST00000517465.1_1_8:103270587-103274193:-|nuORF	MSMS	HCT116MG_D190212_S3	3	459.17218017578125	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3769	1	9.403	8.903	9.903	0.026101								0	0	0	0.8837	1	2834	2834		0.69038	0.69038	1				11079	8540	6428	6469	10694	10694					-0.1308575503933298
FSDGRTQKY	9	Unmodified	_FSDGRTQKY_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-MSMS	HCT116MG_D190212_S2	2	551.269775390625	2	551.269813	1100.52507	0.28398	0.00015655	-0.69195	-0.00038145	-0.40797	-0.0002249	551.2697475032037	20.218	0.20872	19.839	19.709	19.917	-0.37949					5	3	2	0	0	0	0.029121	1	7065	7065		87.258	41.237	1	14168000			11080	5300	6429	6470	10695	10695					-0.021169195675156516
FSDGRTQKY	9	Unmodified	_FSDGRTQKY_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-MSMS	HCT116MG_D190212_S3	3	551.2698364257812	2	551.269813	1100.52507	0.38225	0.00021072	0.11394	6.281E-05	0.49619	0.00027353	551.2698254820217	19.196	0.25989	19.265	19.135	19.395	0.069159					7	4	2	0	0	0	0.051033	1	6584	6584		74.2	36.226	1	6327100			11081	5300	6429	6470	10696	10696					-0.021169195675156516
FSDGRTQKY	9	Unmodified	_FSDGRTQKY_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	551.269813	1100.52507	0.38293	0.0002111	-0.63042	-0.00034753	-0.24749	-0.00013643	551.2696783484262	19.521	0.15639	19.521	19.443	19.6	0	-0.15865	3.7437E-05	NaN	87.258	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1853400			11082	5300	6429	6470							-0.021169195675156516
FSDGTHGGLRY	11	Unmodified	_FSDGTHGGLRY_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	HCT116MG_D190212_S1	1	403.8595886230469	3	403.859755	1208.55744	0.13301	5.3718E-05	-0.6771	-0.00027345	-0.54409	-0.00021974	403.8596054500509	29.138	0.20902	29.138	29.007	29.216	0					5	3	2	0	0	0	0.71419	1	10669	10669		10.016	0	1	4457600			11083	6627	6430	6471	10697	10697					-0.03850132164529896
FSDGTHGGLRY	11	Unmodified	_FSDGTHGGLRY_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MSMS	HCT116MG_D190212_S1	1	605.28662109375	2	605.285994	1208.55744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.212	1	29.212	28.712	29.712	0								0	0	0	0.53373	1	10668	10668		46.022	35.948	1				11084	6627	6430	6471	10698	10698					-0.03850132164529896
FSDGTHGGLRY	11	Unmodified	_FSDGTHGGLRY_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	HCT116MG_D190212_S2	2	605.2860717773438	2	605.285994	1208.55744	1.0031	0.00060715	-0.097455	-5.8988E-05	0.90563	0.00054816	605.285808192827	29.528	0.25809	29.227	29.082	29.34	-0.30095					10	4	3	0	0	0	9.556699999999999E-23	1	10824	10824		251.75	137.1	1	48388000			11085	6627	6430	6471	10699	10699					-0.03850132164529896
FSDGTHGGLRY	11	Unmodified	_FSDGTHGGLRY_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	HCT116MG_D190212_S2	2	403.8597412109375	3	403.859755	1208.55744	0.20537	8.2941E-05	-0.1411	-5.6983E-05	0.064275	2.5958E-05	403.85970487013805	29.512	0.25809	29.211	29.082	29.34	-0.30095					8	4	2	0	0	0	0.21106	1	10836	10836		60.943	42.222	1	36998000			11086	6627	6430	6471	10700	10700					-0.03850132164529896
FSDGTHGGLRY	11	Unmodified	_FSDGTHGGLRY_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	HCT116MG_D190212_S3	3	605.7875366210938	2	605.285994	1208.55744	0.68008	0.00041164	-0.17785	-0.00010765	0.50223	0.00030399	605.2857970139664	29.554	0.26093	29.318	29.187	29.448	-0.23655					12	4	3	0	0	0	2.9173E-12	1	10754	10754		216.42	123.76	1	16953000			11087	6627	6430	6471	10701	10701					-0.03850132164529896
FSDGTHGGLRY	11	Unmodified	_FSDGTHGGLRY_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	HCT116MG_D190212_S3	3	403.8596496582031	3	403.859755	1208.55744	0.14879	6.0089E-05	0.28522	0.00011519	0.43401	0.00017528	403.8596603581078	29.583	0.26093	29.346	29.187	29.448	-0.23655					8	4	3	0	0	0	0.35116	1	10768	10768		48.561	29.84	1	6993000			11088	6627	6430	6471	10702	10702					-0.03850132164529896
FSDGTHGGLRY	11	Unmodified	_FSDGTHGGLRY_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	HCT116MG_D190212_S4	4	605.2869873046875	2	605.285994	1208.55744	1.0733	0.00064964	-0.04739	-2.8684E-05	1.0259	0.00062096	605.2858787646986	29.772	0.20795	29.423	29.293	29.501	-0.34921					5	3	2	0	0	0	0.053212	1	10774	10774		97.741	37.667	1	4748800			11089	6627	6430	6471	10703	10703					-0.03850132164529896
FSDGTHGGLRY	11	Unmodified	_FSDGTHGGLRY_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	HCT116MG_D190212_S4	4	404.1940002441406	3	403.859755	1208.55744	0.083466	3.3709E-05	-0.56518	-0.00022825	-0.48172	-0.00019455	404.1937789673329	29.772	0.25995	29.423	29.293	29.553	-0.34921					6	4	2	0	0	0	0.74191	1	10797	10797		3.8459	0	1	3435800			11090	6627	6430	6471	10704	10704					-0.03850132164529896
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	HCT116MG_D190212_S1	1	588.7575073242188	2	588.757069	1175.49959	0.5623	0.00033106	0.076871	4.5258E-05	0.63917	0.00037632	588.757093001043	16.448	0.26024	16.448	16.317	16.577	0					12	4	4	0	0	0	7.9025E-11	1	5555	5555		240.95	201	1	44097000			11091	1747	6431	6472	10705	10705					-0.08114394089966481
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	HCT116MG_D190212_S1	1	392.84051513671875	3	392.840472	1175.49959	-0.14682	-5.7678E-05	0.28944	0.0001137	0.14261	5.6024E-05	392.84053131427044	16.447	0.26024	16.447	16.317	16.577	0					13	4	4	0	0	0	0.090581	1	5557	5557		55.235	45.852	1	43525000			11092	1747	6431	6472	10706	10706					-0.08114394089966481
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	HCT116MG_D190212_S2	2	588.7573852539062	2	588.757069	1175.49959	0.5964	0.00035114	-0.085532	-5.0358E-05	0.51087	0.00030078	588.7570929117787	17.093	0.67804	16.743	16.561	17.239	-0.34933					35	12	5	0	0	0	7.9025E-11	1	5796	5796		240.95	191.4	1	575280000			11093	1747	6431	6472	10707	10707					-0.08114394089966481
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	HCT116MG_D190212_S2	2	392.8404846191406	3	392.840472	1175.49959	0.099914	3.925E-05	-0.052761	-2.0727E-05	0.047153	1.8524E-05	392.8404554226763	17.093	0.62586	16.743	16.561	17.187	-0.34933					27	11	4	0	0	0	0.045679	1	5798	5798		62.869	53.104	1	318110000			11094	1747	6431	6472	10708	10708					-0.08114394089966481
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	HCT116MG_D190212_S2	2	1176.5068359375	1	1176.50686	1175.49959	0.5101	0.00060013	-0.28349	-0.00033353	0.2266	0.0002666	1176.5065313524562	17.093	0.31268	16.743	16.613	16.925	-0.34933					7	5	2	0	0	0	0.0034865	1	5819	5819		165.72	109.54	1	14237000			11095	1747	6431	6472	10709	10709					-0.08114394089966481
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	HCT116MG_D190212_S3	3	392.84033203125	3	392.840472	1175.49959	-0.052812	-2.0747E-05	0.046545	1.8285E-05	-0.0062671	-2.462E-06	392.84043292968846	15.449	0.46892	15.535	15.404	15.873	0.085423					18	8	3	0	0	0	0.030039	1	5061	5061		70.929	54.78	1	32892000			11096	1747	6431	6472	10710	10710					-0.08114394089966481
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	HCT116MG_D190212_S3	3	588.7572631835938	2	588.757069	1175.49959	0.52334	0.00030812	-0.0095777	-5.6389E-06	0.51376	0.00030248	588.7570208832641	15.449	0.31252	15.535	15.404	15.717	0.085423					16	5	4	0	0	0	0.00046881	1	5062	5062		195.45	145.9	1	32819000			11097	1747	6431	6472	10711	10711					-0.08114394089966481
FSDHHENKYL	10	Unmodified	_FSDHHENKYL_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	HCT116MG_D190212_S2	2	430.53521728515625	3	430.53516	1288.58365	-0.084311	-3.6299E-05	0.32262	0.0001389	0.23831	0.0001026	430.53527490513284	25.634	0.25932	25.265	25.135	25.394	-0.36914					9	4	3	0	0	0	0.5059	1	9265	9265		34.79	34.79	1	31587000			11098	1747	6432	6473	10712	10712					-0.04909862993054048
FSDIHDFEY	9	Unmodified	_FSDIHDFEY_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-SECPEP	HCT116MG_D190212_S1	1	586.3157958984375	2	586.748379	1171.4822	0.47422	0.00027825	-0.3003	-0.0001762	0.17392	0.00010205	587.2495422824998	44.491	0.21156	44.491	44.357	44.568	0					5	3	2	0	0	0	0.15894	1	16833	16833		46.021	31.183	1	4391600			11099	6073	6433	6474	10713	10713					-0.09667734415597806
FSDIHDFEY	9	Unmodified	_FSDIHDFEY_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	HCT116MG_D190212_S2	2	586.7486572265625	2	586.748379	1171.4822	0.68313	0.00040083	-0.54354	-0.00031892	0.13959	8.1907E-05	586.7478517199612	44.521	0.26079	44.437	44.274	44.535	-0.084797					6	4	2	0	0	0	0.020181	1	16924	16924		96.285	69.401	1	24618000			11100	6073	6433	6474	10714	10714					-0.09667734415597806
FSDIHIQRL	9	Unmodified	_FSDIHIQRL_					0	0	0		ENST00000413059.1_1_X:57419910-57420861:-|nuORF	ENST00000413059.1_1_X:57419910-57420861:-|nuORF	ENST00000413059.1_1_X:57419910-57420861:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	564.3589477539062	2	564.811648	1127.60874	0.26923	0.00015206	0.23937	0.0001352	0.5086	0.00028726	564.8116886206174	38.13	0.15519	38.037	37.96	38.115	-0.09301					4	2	2	0	0	0	0.26328	1	14300	14300		1.8442	0.51471	1	13767000			11101	7740	6434	6475	10715	10715					0.050042366001889604
FSDKNGLTS	9	Unmodified	_FSDKNGLTS_					0	0	0		ENSG00000069482|ENST00000265643|GAL	ENSG00000069482|ENST00000265643|GAL	ENSG00000069482|ENST00000265643|GAL	MSMS	HCT116MG_D190212_S2	2	484.7380676269531	2	484.737814	967.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.491	1	25.121	24.621	25.621	-0.36914								0	0	0	0.022654	1	9181	9181		89.401	3.7592	1				11102	1219	6435	6476	10716	10716					-0.023956997244795275
FSDMSIFDLP	10	Unmodified	_FSDMSIFDLP_					0	0	0		ENSG00000178386|ENST00000434772|ZNF223	ENSG00000178386|ENST00000434772|ZNF223	ENSG00000178386|ENST00000434772|ZNF223	MSMS	HCT116MG_D190212_S4	4	586.2711181640625	2	586.270632	1170.52671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.133	1	40.756	40.256	41.256	-0.37732								0	0	0	0.92272	1	15116	15116		10.824	0.75	1				11103	5499	6436	6477	10717	10717					-0.051730465937907866
FSDPERVNY	9	Unmodified	_FSDPERVNY_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	HCT116MG_D190212_S1	1	564.2645263671875	2	563.76182	1125.50909	0.20903	0.00011784	0.30787	0.00017357	0.5169	0.00029141	563.7618850835938	32.143	0.41665	32.143	31.909	32.326	0					23	7	4	0	0	0	0.0038512	1	11814	11814		152.89	152.89	1	86485000			11104	1932	6437	6478	10718	10718					-0.048646258044072965
FSDPERVNY	9	Unmodified	_FSDPERVNY_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	HCT116MG_D190212_S2	2	563.762451171875	2	563.76182	1125.50909	0.36687	0.00020683	0.082172	4.6325E-05	0.44904	0.00025315	563.761812637652	32.303	0.57222	32.073	31.787	32.359	-0.23009					31	10	5	0	0	0	0.0038512	1	11934	11934		152.89	152.89	1	368070000			11105	1932	6437	6478	10719	10719					-0.048646258044072965
FSDPERVNY	9	Unmodified	_FSDPERVNY_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1126.5174560546875	1	1126.51636	1125.50909	0.4956	0.00055831	0.035276	3.9739E-05	0.53088	0.00059805	1126.5161613955656	32.338	0.31192	32.108	31.942	32.254	-0.23009					13	5	3	0	0	0	0.0056012	1	11953	11953		132.38	88.607	1	33966000			11106	1932	6437	6478	10720	10720					-0.048646258044072965
FSDPERVNY	9	Unmodified	_FSDPERVNY_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2626953125	2	563.76182	1125.50909	0.43721	0.00024648	-0.11471	-6.4666E-05	0.3225	0.00018181	563.7617051769777	32.505	0.57309	32.227	31.942	32.515	-0.27841					34	10	5	0	0	0	0.0059958	1	11887	11887		128.93	81.338	1	73886000			11107	1932	6437	6478	10721	10721					-0.048646258044072965
FSDPERVNY	9	Unmodified	_FSDPERVNY_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1;ESRP1|p.N512Tfs*2|2|0.36|ENSG00000104413|chr8:94674383-94674383|A/-|frameshift_variant;ESRP1|p.N512Hfs*7|2|0.33|ENSG00000104413|chr8:94674383-94674384|AA/-|frameshift_variant;ESRP1|p.N512Kfs*8|1|0.48|ENSG00000104413|chr8:94674382-94674383|-/A|frameshift_variant;ESRP1|p.L333Sfs*55|1|0.35|ENSG00000104413|chr8:94668009-94668009|G/-|frameshift_variant	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	HCT116MG_D190212_S4	4	564.2633056640625	2	563.76182	1125.50909	0.28012	0.00015792	-0.10903	-6.1469E-05	0.17109	9.6451E-05	563.7617688415901	32.562	0.3634	32.183	31.949	32.312	-0.37924					15	6	3	0	0	0	0.0055242	1	11861	11861		133.05	133.05	1	15149000			11108	1932	6437	6478	10722	10722					-0.048646258044072965
FSDQGGRKY	9	Unmodified	_FSDQGGRKY_					0	0	0		PPM1D|p.M349Nfs*19|1|0.3|ENSG00000170836|chr17:60656622-60656623|-/A|frameshift_variant;nc|ENSG00000170836|O15297-2|PPM1D;ENSG00000170836|ENST00000305921|PPM1D	PPM1D|p.M349Nfs*19|1|0.3|ENSG00000170836|chr17:60656622-60656623|-/A|frameshift_variant	PPM1D|p.M349Nfs*19|1|0.3|ENSG00000170836|chr17:60656622-60656623|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	529.2568969726562	2	529.256705	1056.49886	0.24085	0.00012747	0.31046	0.00016431	0.55131	0.00029179	529.256819412882	18.682	0.20849	18.682	18.558	18.766	0					7	3	3	0	0	0	0.27446	1	6453	6453		36.127	5.4905	1	3075700			11109	5160	6438	6479	10723	10723					-0.027131887389714393
FSDQGGRKY	9	Unmodified	_FSDQGGRKY_					0	0	0		PPM1D|p.M349Nfs*19|1|0.3|ENSG00000170836|chr17:60656622-60656623|-/A|frameshift_variant;nc|ENSG00000170836|O15297-2|PPM1D;ENSG00000170836|ENST00000305921|PPM1D	PPM1D|p.M349Nfs*19|1|0.3|ENSG00000170836|chr17:60656622-60656623|-/A|frameshift_variant	PPM1D|p.M349Nfs*19|1|0.3|ENSG00000170836|chr17:60656622-60656623|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2568359375	2	529.256705	1056.49886	0.42675	0.00022586	0.26204	0.00013869	0.68879	0.00036455	529.256606991559	19.335	0.2608	18.966	18.836	19.096	-0.3695					9	4	3	0	0	0	0.013592	1	6702	6702		125.53	60.294	1	21134000			11110	5160	6438	6479	10724	10724					-0.027131887389714393
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	HCT116MG_D190212_S1	1	558.2902221679688	2	558.290214	1114.56587	0.56877	0.00031754	-0.44429	-0.00024804	0.12448	6.9499E-05	558.2898045857764	24.438	0.26117	24.438	24.307	24.568	0					6	4	2	0	0	0	0.0068642	1	8773	8773		121.35	77.573	1	10264000			11111	4680	6439	6480	10725	10725					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MSMS	HCT116MG_D190212_S1	1	372.5293273925781	3	372.529235	1114.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.508	1	24.508	24.008	25.008	0								0	0	0	0.27628	1	8776	8776		38.615	30.17	1				11112	4680	6439	6480	10726	10726					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2903442382812	2	558.290214	1114.56587	0.42355	0.00023647	-0.0877	-4.8962E-05	0.33585	0.0001875	558.2900602635257	24.957	0.25916	24.582	24.4	24.66	-0.37521					12	4	4	0	0	0	0.00446	1	8967	8967		143.91	93.976	1	62720000			11113	4680	6439	6480	10727	10727					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	HCT116MG_D190212_S2	2	372.52923583984375	3	372.529235	1114.56587	-0.14964	-5.5746E-05	0.16588	6.1794E-05	0.016233	6.0475E-06	372.52920353569107	24.941	0.20722	24.565	24.452	24.66	-0.37521					8	3	3	0	0	0	0.035349	1	8971	8971		65.474	44.603	1	28457000			11114	4680	6439	6480	10728	10728					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	HCT116MG_D190212_S3	3	372.52886962890625	3	372.529235	1114.56587	-0.10323	-3.8457E-05	-0.11493	-4.2813E-05	-0.21816	-8.1271E-05	372.52909964355007	24.561	0.20852	24.478	24.341	24.549	-0.083694					9	3	3	0	0	0	0.12205	1	8738	8738		42.312	26.574	1	6958300			11115	4680	6439	6480	10729	10729					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	HCT116MG_D190212_S3	3	558.7919921875	2	558.290214	1114.56587	0.37408	0.00020885	0.15909	8.8821E-05	0.53317	0.00029767	558.2899816675617	24.555	0.26046	24.471	24.341	24.601	-0.083694					10	4	3	0	0	0	0.0158	1	8745	8745		100.71	70.868	1	7131600			11116	4680	6439	6480	10730	10730					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MSMS	HCT116MG_D190212_S4	4	558.2898559570312	2	558.290214	1114.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.889	1	24.62	24.12	25.12	-0.26881								0	0	0	0.32081	1	8793	8793		38.615	21.172	1				11117	4680	6439	6480	10731	10731					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MATCH	HCT116MG_D190212_S4	4		2	558.290214	1114.56587	0.45165	0.00025215	0.032514	1.8152E-05	0.48416	0.0002703	558.2899584629388	24.844	0.15576	24.575	24.445	24.601	-0.26881	0.058517	0.0001659	NaN	143.91	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4428800			11118	4680	6439	6480							0.01317421752082737
FSDTGNFGF	9	Unmodified	_FSDTGNFGF_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-MSMS	HCT116MG_D190212_S2	2	991.4163208007812	1	991.415588	990.408311	0.6939	0.00068794	0.041622	4.1265E-05	0.73552	0.00072921	991.4154309351565	52.978	0.46548	52.789	52.604	53.07	-0.18922					18	8	3	0	0	0	0.0034749	1	20352	20352		164.52	113.66	1	48822000			11119	3771	6440	6481	10732	10732					-0.08727657787278531
FSDTGNFGF	9	Unmodified	_FSDTGNFGF_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-MSMS	HCT116MG_D190212_S3	3	991.416015625	1	991.415588	990.408311	0.82719	0.00082009	0.25367	0.00025149	1.0809	0.0010716	991.415601158213	53.102	0.31387	52.799	52.669	52.983	-0.30305					12	5	3	0	0	0	0.0054498	1	20097	20097		133.7	91.607	1	7071200			11120	3771	6440	6481	10733	10733					-0.08727657787278531
FSDTGNFGF	9	Unmodified	_FSDTGNFGF_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-MSMS	HCT116MG_D190212_S4	4	991.4154663085938	1	991.415588	990.408311	0.63549	0.00063004	-0.6772	-0.00067138	-0.041704	-4.1346E-05	991.4149103142148	53.164	0.26026	52.829	52.671	52.931	-0.33473					7	4	2	0	0	0	0.0051486	1	19844	19844		136.33	94.239	1	2649900			11121	3771	6440	6481	10734	10734					-0.08727657787278531
FSDTGNFGF	9	Unmodified	_FSDTGNFGF_					0	0	0		nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF	nc|ENSG00000142676|P62913-2|RPL11	nc|ENSG00000142676|P62913-2|RPL11	MULTI-MATCH	HCT116MG_D190212_S1	1		1	991.415588	990.408311	0.6772	0.00067139	0.12848	0.00012738	0.80568	0.00079877	991.4153391019621	52.664	0.2058	52.664	52.536	52.742	0	-0.1063	0.00017752	NaN	164.52	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9788400			11122	3771	6440	6481							-0.08727657787278531
FSDVNMQEY	9	Unmodified	_FSDVNMQEY_					0	0	0		nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100	nc|ENSG00000067066|P23497-3|SP100	nc|ENSG00000067066|P23497-3|SP100	MSMS	HCT116MG_D190212_S3	3	566.7342529296875	2	566.734414	1131.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.588	1	40.286	39.786	40.786	-0.30161								0	0	0	0.67173	1	15073	15073		20.454	11.86	1				11123	1180	6441	6482	10735	10735					-0.10619380667344558
FSEEGAVGY	9	Unmodified	_FSEEGAVGY_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	HCT116MG_D190212_S1	1	958.4175415039062	1	958.415253	957.407977	0.88965	0.00085265	0.31631	0.00030316	1.206	0.0011558	958.4156622817225	35.586	0.20587	35.586	35.424	35.63	0					8	3	3	0	0	0	0.065014	1	13254	13254		67.344	12.57	1	16589000			11124	1424	6442	6483	10736	10736					-0.07243077507132512
FSEEGAVGY	9	Unmodified	_FSEEGAVGY_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	HCT116MG_D190212_S2	2	958.4158935546875	1	958.415253	957.407977	0.71666	0.00068686	0.42757	0.00040979	1.1442	0.0010966	958.4153451348628	35.658	0.46254	35.515	35.335	35.797	-0.14245					16	8	3	0	0	0	0.043314	1	13309	13309		77.984	35.89	1	118040000			11125	1424	6442	6483	10737	10737					-0.07243077507132512
FSEEGAVGY	9	Unmodified	_FSEEGAVGY_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	HCT116MG_D190212_S3	3	958.41650390625	1	958.415253	957.407977	0.75781	0.0007263	-0.0040547	-3.8861E-06	0.75376	0.00072242	958.4150967855737	35.885	0.30978	35.584	35.42	35.729	-0.30042					10	6	2	0	0	0	0.031005	1	13236	13236		85.357	43.262	1	9211400			11126	1424	6442	6483	10738	10738					-0.07243077507132512
FSEEHYIFY	9	Unmodified	_FSEEHYIFY_					0	0	0		RASA1|p.V643Gfs*4|1|0.04|ENSG00000145715|chr5:87374313-87374314|-/GGCT|frameshift_variant;RASA1|p.V643Mfs*15|1|0.04|ENSG00000145715|chr5:87374311-87374312|-/TA|frameshift_variant;RASA1|p.N838Mfs*4|2|0.36|ENSG00000145715|chr5:87379754-87379754|A/-|frameshift_variant;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	RASA1|p.V643Gfs*4|1|0.04|ENSG00000145715|chr5:87374313-87374314|-/GGCT|frameshift_variant	RASA1|p.V643Gfs*4|1|0.04|ENSG00000145715|chr5:87374313-87374314|-/GGCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	617.774658203125	2	617.774396	1233.53424	0.48859	0.00030184	0.29739	0.00018372	0.78598	0.00048556	617.7743162572771	50.601	0.31346	50.43	50.245	50.558	-0.1719					12	5	3	0	0	0	0.47829	1	19405	19405		18.135	6.4947	1	33963000			11127	3918	6443	6484	10739	10739					-0.07318571001860619
FSEEQLNRY	9	Unmodified	_FSEEQLNRY_					0	0	0		nc|ENSG00000064995|Q15544-2|TAF11;ENSG00000064995|ENST00000361288|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	MULTI-MSMS	HCT116MG_D190212_S3	3	593.28076171875	2	593.280377	1184.5462	0.48594	0.0002883	0.23371	0.00013865	0.71965	0.00042695	593.2805398677426	34.867	0.2082	34.57	34.492	34.7	-0.29707					6	3	2	0	0	0	0.0077497	1	12884	12884		118.89	71.3	1	5403000			11128	1146	6444	6485	10740	10740					-0.038689542586553216
FSEEQLNRY	9	Unmodified	_FSEEQLNRY_					0	0	0		nc|ENSG00000064995|Q15544-2|TAF11;ENSG00000064995|ENST00000361288|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	MULTI-MSMS	HCT116MG_D190212_S4	4	593.2806396484375	2	593.280377	1184.5462	0.84968	0.0005041	-0.5837	-0.0003463	0.26598	0.0001578	593.2802175009681	34.954	0.20762	34.568	34.49	34.698	-0.38606					5	3	2	0	0	0	0.16306	1	12816	12816		45.7	27.327	1	2148100			11129	1146	6444	6485	10741	10741					-0.038689542586553216
FSEEQLNRY	9	Unmodified	_FSEEQLNRY_					0	0	0		nc|ENSG00000064995|Q15544-2|TAF11;ENSG00000064995|ENST00000361288|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	nc|ENSG00000064995|Q15544-2|TAF11	MULTI-MATCH	HCT116MG_D190212_S2	2		2	593.280377	1184.5462	0.85715	0.00050853	-0.81065	-0.00048094	0.046496	2.7585E-05	593.2798504643359	34.634	0.20613	34.476	34.348	34.554	-0.15834	-0.06229	-0.00065635	NaN	118.89	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21725000			11130	1146	6444	6485							-0.038689542586553216
FSEFTGVWKY	10	Unmodified	_FSEFTGVWKY_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MSMS	HCT116MG_D190212_S2	2	632.3065185546875	2	632.305864	1262.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.263	1	53.074	52.574	53.574	-0.18922								0	0	0	0.28339	1	20479	20479		61.602	26.67	1				11131	8450	6445	6486	10742	10742					-0.023620052138085157
FSEGSVIAY	9	Unmodified	_FSEGSVIAY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	HCT116MG_D190212_S2	2	972.468017578125	1	972.467289	971.460012	0.87878	0.00085458	-0.64882	-0.00063095	0.22996	0.00022363	972.4670510762373	44.75	0.31148	44.665	44.535	44.846	-0.084797					8	5	2	0	0	0	0.011506	1	17017	17017		109.63	63.608	1	26197000			11132	4060	6446	6487	10743	10743					-0.026859140933765957
FSEIDLEKY	9	Unmodified	_FSEIDLEKY_					0	0	0		ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	MULTI-MSMS	HCT116MG_D190212_S2	2	572.2822875976562	2	572.282054	1142.54956	0.38349	0.00021947	0.11423	6.5372E-05	0.49772	0.00028484	572.2819828620657	45.323	0.25838	45.23	45.101	45.359	-0.092472					8	4	2	0	0	0	0.28785	1	17280	17280		32.037	18.995	1	55629000			11133	5511	6447	6488	10744	10744					-0.016017042046541974
FSEIDLEKY	9	Unmodified	_FSEIDLEKY_					0	0	0		ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	MSMS	HCT116MG_D190212_S3	3	572.2824096679688	2	572.282054	1142.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.604	1	45.293	44.793	45.793	-0.31094								0	0	0	0.080552	1	17079	17079		61.602	25.475	1				11134	5511	6447	6488	10745	10745					-0.016017042046541974
FSEIDLEKY	9	Unmodified	_FSEIDLEKY_					0	0	0		ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	MULTI-MSMS	HCT116MG_D190212_S4	4	572.2821044921875	2	572.282054	1142.54956	0.6143	0.00035155	-0.41085	-0.00023512	0.20345	0.00011643	572.281815826551	45.61	0.2028	45.237	45.091	45.294	-0.37265					6	3	2	0	0	0	0.064006	1	16839	16839		67.838	25.999	1	1717100			11135	5511	6447	6488	10746	10746					-0.016017042046541974
FSEKLEAEY	9	Unmodified	_FSEKLEAEY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	HCT116MG_D190212_S1	1	558.2908935546875	2	558.266404	1114.51826	0.50872	0.000284	0.014037	7.8365E-06	0.52276	0.00029184	558.2659471964521	36.053	0.20826	36.053	35.942	36.15	0					5	3	2	0	0	0	0.47829	1	13433	13433		18.135	5.6034	1	3772800			11136	2123	6448	6489	10747	10747					-0.03442277238764291
FSEPRAVFY	9	Unmodified	_FSEPRAVFY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-SECPEP	HCT116MG_D190212_S2	2	558.2788696289062	2	558.279649	1114.54475	0.37145	0.00020737	-0.73067	-0.00040792	-0.35922	-0.00020055	558.2786581059438	45.341	0.20641	45.249	45.153	45.359	-0.092476					5	3	2	0	0	0	0.19615	1	17272	17272		29.841	7.1043	1	10888000			11137	1152	6449	6490	10748	10748					-0.007945435567535242
FSESKHTEP	9	Unmodified	_FSESKHTEP_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MSMS	HCT116MG_D190212_S2	2	531.256103515625	2	531.248546	1060.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.052	1	24.677	24.177	25.177	-0.37521								0	0	0	0.1107	1	9005	9005		53.833	6.2384	1				11138	5714	6450	6491	10749	10749					-0.04528314695744484
FSFEDDTV	8	Unmodified	_FSFEDDTV_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ADD3-MXI1|1|fusion;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-SECPEP	HCT116MG_D190212_S1	1	480.7607727050781	2	480.203273	958.391992	0.17792	8.5438E-05	-1.4473	-0.00069498	-1.2693	-0.00060954	480.20275363433063	37.068	0.20761	37.068	36.938	37.146	0					5	3	2	0	0	0	0.32676	1	13802	13802		0.52476	0	1	3033800			11139	9498	6451	6492	10750	10750					-0.0888678374403753
FSFIDSKF	8	Unmodified	_FSFIDSKF_					0	0	0			REV__ENST00000490698.5_1_4:75025897-75025945:+|nuORF	REV__ENST00000490698.5_1_4:75025897-75025945:+|nuORF	MSMS	HCT116MG_D190212_S4	4	495.7480163574219	2	495.750193	989.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.016	1	26.705	26.205	27.205	-0.3114								0	0	0	0.8837	1	9652	9652		15.847	1.0089	1		+		11140	16033	6452	6493	10751	10751					-0.00933019851095196
FSGGRSTK	8	Unmodified	_FSGGRSTK_					0	0	0		tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	420.2598571777344	2	420.222134	838.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.988	1	61.734	61.234	62.234	-0.25457								0	0	0	0.8837	1	23400	23400		4.3292	1.7518	1				11141	18385	6453	6494	10752	10752					0.004037720320980043
FSGNMQNDA	9	Unmodified	_FSGNMQNDA_					0	0	0		ENSG00000131864|ENST00000254181|USP29	ENSG00000131864|ENST00000254181|USP29	ENSG00000131864|ENST00000254181|USP29	MULTI-MSMS	HCT116MG_D190212_S3	3	492.1978454589844	2	492.197999	982.381445	0.14625	7.1985E-05	1.4953	0.00073599	1.6416	0.00080798	492.19809516397333	35.9	0.2475	35.6	35.482	35.729	-0.30042					7	4	2	0	0	0	0.63131	1	13283	13283		9.3831	0.78985	1	4570300			11142	3159	6454	6495	10753	10753					-0.11045089670119523
FSGSSPAPPSQ	11	Unmodified	_FSGSSPAPPSQ_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MSMS	HCT116MG_D190212_S3	3	531.295654296875	2	531.248546	1060.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.811	1	24.727	24.227	25.227	-0.083694								0	0	0	0.28372	1	8829	8829		61.602	13.256	1				11143	3306	6455	6496	10754	10754					-0.045283146957672216
FSHCGRLLASA	11	Unmodified	_FSHCGRLLASA_					0	0	0		WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-3|WDR44	WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	581.2932739257812	2	581.295307	1160.57606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.045	1	32.76	32.26	33.26	-0.28511								0	0	0	0.91433	1	12131	12131		18.146	2.8979	1				11144	3153	6456	6497	10755	10755					0.0021970620568936283
FSHHMYFRHMY	11	Unmodified	_FSHHMYFRHMY_					0	0	0			REV__ENST00000464932.1_1_2:135676424-135677557:+|nuORF	REV__ENST00000464932.1_1_2:135676424-135677557:+|nuORF	MSMS	HCT116MG_D190212_S2	2	778.3423461914062	2	778.339723	1554.66489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.042	1	46.92	46.42	47.42	-0.12175								0	0	0	0.95023	1	17935	17935		6.2058	0.47393	1		+		11145	10886	6457	6498	10756	10756					-0.09025201826307239
FSISRRLFN	9	Unmodified	_FSISRRLFN_					0	0	0			REV__ENST00000416005.6_1_2:27821100-27823584:+|nuORF	REV__ENST00000416005.6_1_2:27821100-27823584:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	570.547119140625	2	570.31964	1138.62473	0.019514	1.1129E-05	-0.13149	-7.4993E-05	-0.11198	-6.3864E-05	570.3195022355312	49.858	0.40839	49.694	49.483	49.891	-0.16369					18	7	4	0	0	0	0.55732	1	19163	19163		19.257	8.4331	1	197820000	+		11146	15473	6458	6499	10757	10757					0.06095942837077928
FSIWERKRLSL	11	Unmodified	_FSIWERKRLSL_					0	0	0			REV__ENST00000478617.5_1_1:201970859-201972388:+|nuORF	REV__ENST00000478617.5_1_1:201970859-201972388:+|nuORF	MSMS	HCT116MG_D190212_S3	3	478.94342041015625	3	478.945383	1433.81432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.207	1	54.915	54.415	55.415	-0.2918								0	0	0	0.95705	1	20936	20936		2.6312	0.72486	1		+		11147	15935	6459	6500	10758	10758					0.11476390059601727
FSKAQGGY	8	Unmodified	_FSKAQGGY_					0	0	0		ENST00000506481.1_1_4:125356953-125357223:-|nuORF	ENST00000506481.1_1_4:125356953-125357223:-|nuORF	ENST00000506481.1_1_4:125356953-125357223:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	429.21087646484375	2	429.211235	856.407917	-0.28419	-0.00012198	-0.46775	-0.00020076	-0.75194	-0.00032274	429.21093600701226	30.235	0.41195	29.951	29.77	30.182	-0.28453					13	7	3	0	0	0	0.69862	1	11109	11109		23.148	2.2772	1	139320000			11148	8463	6460	6501	10759	10759					-0.026030327164676237
FSKAQGGY	8	Unmodified	_FSKAQGGY_					0	0	0		ENST00000506481.1_1_4:125356953-125357223:-|nuORF	ENST00000506481.1_1_4:125356953-125357223:-|nuORF	ENST00000506481.1_1_4:125356953-125357223:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	429.21112060546875	2	429.211235	856.407917	0.087159	3.741E-05	0.14064	6.0364E-05	0.2278	9.7774E-05	429.2111312470471	31.112	0.25804	30.845	30.716	30.974	-0.26704					7	4	2	0	0	0	0.74197	1	11487	11487		18.146	3.5647	1	32977000			11149	8463	6460	6501	10760	10760					-0.026030327164676237
FSKIRKEILK	10	Unmodified	_FSKIRKEILK_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MSMS	HCT116MG_D190212_S4	4	421.26983642578125	3	421.271207	1260.79179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.687	1	43.312	42.812	43.812	-0.37433								0	0	0	0.96804	1	16067	16067		0.69767	0.19171	1				11150	5959	6461	6502	10761	10761					0.17182790661968284
FSKISLLLGI	10	Unmodified	_FSKISLLLGI_					0	0	0		nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF	nc|ENSG00000102452|Q8IZF0-2|NALCN	nc|ENSG00000102452|Q8IZF0-2|NALCN	MSMS	HCT116MG_D190212_S1	1	364.23272705078125	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.309	1	43.309	42.809	43.809	0								0	0	0	0.96183	1	16358	16358		2.086	0.34373	1				11151	8145	6462	6503	10762	10762					0.13852936584999043
FSKYRPWV	8	Unmodified	_FSKYRPWV_					0	0	0			REV__GRIN2A|p.L425*|1|0.24|ENSG00000183454|chr16:9849811-9849811|G/-|frameshift_variant	REV__GRIN2A|p.L425*|1|0.24|ENSG00000183454|chr16:9849811-9849811|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	361.5309753417969	3	361.53091	1081.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.47	1	11.188	10.688	11.688	-0.28186								0	0	0	0.8837	1	3698	3698		1.6526	0.45928	1		+		11152	13763	6463	6504	10763	10763					0.03337770405369156
FSLKKMLIRHK	11	Unmodified	_FSLKKMLIRHK_					0	0	0		ENST00000505484.5_1_4:121616268-121652778:-|nuORF;nc|ENSG00000138738|Q9NQX1-2|PRDM5;ENSG00000138738|ENST00000264808|PRDM5	ENST00000505484.5_1_4:121616268-121652778:-|nuORF	ENST00000505484.5_1_4:121616268-121652778:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	700.9324951171875	2	700.931574	1399.8486	0.79005	0.00055377	0.70227	0.00049224	1.4923	0.001046	700.931814945265	55.939	0.20422	55.939	55.811	56.015	0					8	3	3	0	0	0	0.74191	1	21503	21503		1.1933	0	1	77092000			11153	3581	6464	6505	10764	10764					0.16466514946841926
FSLTIKSIIT	10	Unmodified	_FSLTIKSIIT_					0	0	0		nc|ENSG00000101353|Q9H579|MROH8;MROH8|p.F768Lfs*38|1|0.13|ENSG00000101353|chr20:37120510-37120510|A/-|frameshift_variant;MROH8|p.N894Tfs*7|1|0.08|ENSG00000101353|chr20:37114081-37114081|T/-|frameshift_variant;nc|ENSG00000101353|Q9H579-2|MROH8;ENSG00000101353|ENST00000343811|MROH8	nc|ENSG00000101353|Q9H579|MROH8	nc|ENSG00000101353|Q9H579|MROH8	MSMS	HCT116MG_D190212_S4	4	561.8410034179688	2	561.842082	1121.66961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.629	1	40.251	39.751	40.751	-0.37828								0	0	0	0.95507	1	14913	14913		3.5965	0	1				11154	1781	6465	6506	10765	10765					0.11364328859758643
FSLVRLPAIRQ	11	Unmodified	_FSLVRLPAIRQ_					0	0	0			REV__POLD1|p.T642Hfs*97|1|0.26|ENSG00000062822|chr19:50409147-50409148|-/C|frameshift_variant	REV__POLD1|p.T642Hfs*97|1|0.26|ENSG00000062822|chr19:50409147-50409148|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	433.60089111328125	3	433.934706	1298.78229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.643	1	54.453	53.953	54.953	-0.1894								0	0	0	0.95976	1	21043	21043		1.2148	0.80657	1		+		11155	10680	6466	6507	10766	10766					0.1448502237642515
FSMAFLSIQ	9	Unmodified	_FSMAFLSIQ_					0	0	0			REV__ENST00000510832.5_1_4:189376760-189377821:+|nuORF	REV__ENST00000510832.5_1_4:189376760-189377821:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	521.765380859375	2	522.265153	1042.51575	0.24527	0.0001281	1.8759	0.00097971	2.1211	0.0011078	522.2669765591363	38.472	0.31183	38.17	38.04	38.352	-0.30137					7	5	2	0	0	0	0.26128	1	14255	14255		6.2058	0	1	12195000	+		11156	16179	6467	6508	10767	10767					-0.0038040417739466648
FSNATQITS	9	Unmodified	_FSNATQITS_					0	0	0		SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant;nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant	SLC39A8|p.E285Sfs*8|3|0.32|ENSG00000138821|chr4:102268068-102268068|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	484.7380065917969	2	484.737814	967.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.097	1	25.097	24.597	25.597	0								0	0	0	0.32687	1	9013	9013		38.176	0	1				11157	3593	6468	6509	10768	10768					-0.023956997244795275
FSNRVLFKLKL	11	Unmodified	_FSNRVLFKLKL_					0	0	0			REV__ENST00000435504.8_1_2:25964298-25964478:-|nuORF	REV__ENST00000435504.8_1_2:25964298-25964478:-|nuORF	MSMS	HCT116MG_D190212_S1	1	682.923828125	2	682.924272	1363.83399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.513	1	62.513	62.013	63.013	0								0	0	0	0.9598	1	24140	24140		1.1933	0.84271	1		+		11158	15618	6469	6510	10769	10769					0.16662766070362522
FSQDFVLNEFT	11	Unmodified	_FSQDFVLNEFT_					0	0	0			REV__nc|ENSG00000151466|Q96NL6-3|SCLT1	REV__nc|ENSG00000151466|Q96NL6-3|SCLT1	MULTI-MSMS	HCT116MG_D190212_S2	2	673.816162109375	2	673.816793	1345.61903	0.41327	0.00027847	-0.77858	-0.00052462	-0.36531	-0.00024615	673.8162249378202	52.508	0.51591	52.321	52.09	52.606	-0.18725					26	9	4	0	0	0	0.70662	1	20154	20154		19.362	19.362	1	142120000	+		11159	12601	6470	6511	10770	10770					-0.03995245255919144
FSQLFKPAN	9	Unmodified	_FSQLFKPAN_					0	0	0			REV__PCDHB5|p.E241K|1|0.39|ENSG00000113209|chr5:141136155-141136155|G/A|missense_variant	REV__PCDHB5|p.E241K|1|0.39|ENSG00000113209|chr5:141136155-141136155|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	351.22760009765625	3	351.190553	1050.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.6	1	46.229	45.729	46.729	-0.37134								0	0	0	0.76902	1	17209	17209		2.4985	0.75621	1		+		11160	17392	6471	6512	10771	10771					0.026577603058512977
FSQSSSLVLHY	11	Unmodified	_FSQSSSLVLHY_					0	0	0		ENSG00000144026|ENST00000295208|ZNF514	ENSG00000144026|ENST00000295208|ZNF514	ENSG00000144026|ENST00000295208|ZNF514	MSMS	HCT116MG_D190212_S3	3	634.3182373046875	2	634.319502	1266.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.422	1	20.47	19.97	20.97	0.048107								0	0	0	0.93456	1	7062	7062		14.405	0	1				11161	3845	6472	6513	10772	10772					0.0018047832656975515
FSRHIPPYPQP	11	Unmodified	_FSRHIPPYPQP_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MSMS	HCT116MG_D190212_S4	4	670.3382568359375	2	669.851304	1337.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.867	1	45.495	44.995	45.995	-0.37206								0	0	0	0.9465	1	16935	16935		8.1555	1.9497	1				11162	3663	6473	6514	10773	10773					0.032718835542937086
FSRHTQALLD	10	Unmodified	_FSRHTQALLD_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MSMS	HCT116MG_D190212_S1	1	594.3138427734375	2	594.312012	1186.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.097	1	50.097	49.597	50.597	0								0	0	0	0.82636	1	19106	19106		25.399	6.1423	1		+		11163	12804	6474	6515	10774	10774					0.023630312492059602
FSRRKKKGS	9	Unmodified	_FSRRKKKGS_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant;PLCH2|p.G1073Rfs*20|1|0.35|ENSG00000149527|chr1:2504173-2504174|-/C|frameshift_variant;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MSMS	HCT116MG_D190212_S4	4	547.332763671875	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.085	1	60.825	60.325	61.325	-0.2602								0	0	0	0.76973	1	23035	23035		1.8442	0.36234	1				11164	7249	6475	6516	10775	10775					0.10899051448268438
FSRRKKKGS	9	Unmodified	_FSRRKKKGS_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;PLCH2|p.L1045*|1|0.09|ENSG00000149527|chr1:2504091-2504091|C/-|frameshift_variant;PLCH2|p.G1073Rfs*20|1|0.35|ENSG00000149527|chr1:2504173-2504174|-/C|frameshift_variant;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MSMS	HCT116MG_D190212_S4	4	547.3334350585938	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.689	1	61.435	60.935	61.935	-0.25457								0	0	0	0.76973	1	23279	23279		1.8442	0.36234	1				11165	7249	6475	6516	10776	10776					0.10899051448268438
FSSDDAPE	8	Unmodified	_FSSDDAPE_					0	0	0			REV__ENST00000507297.5_1_5:138855848-138858268:-|nuORF	REV__ENST00000507297.5_1_5:138855848-138858268:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	867.3378295898438	1	867.336669	866.329392	0.70864	0.00061463	0.35972	0.000312	1.0684	0.00092663	867.3367981037721	29.758	0.31177	29.758	29.581	29.893	0					10	5	3	0	0	0	0.53394	1	10897	10897		38.151	11.81	1	9825900	+		11166	13808	6476	6517	10777	10777					-0.10911929812232302
FSSSHEGFSY	10	Unmodified	_FSSSHEGFSY_					0	0	0		ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5	ENSG00000244405|ENST00000306376|ETV5	ENSG00000244405|ENST00000306376|ETV5	MULTI-MSMS	HCT116MG_D190212_S2	2	574.2391357421875	2	574.238178	1146.4618	0.62959	0.00036153	0.17939	0.00010301	0.80898	0.00046455	574.2383683791129	35.76	0.30817	35.618	35.489	35.797	-0.14245					10	5	3	0	0	0	0.0053802	1	13373	13373		166.45	62.699	1	32467000			11167	6564	6477	6518	10778	10778					-0.10556905075418399
FSSSHEGFSY	10	Unmodified	_FSSSHEGFSY_					0	0	0		ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5	ENSG00000244405|ENST00000306376|ETV5	ENSG00000244405|ENST00000306376|ETV5	MULTI-MATCH	HCT116MG_D190212_S1	1		2	574.238178	1146.4618	0.51243	0.00029425	0.20838	0.00011966	0.72081	0.00041392	574.2381435525593	35.775	0.20756	35.775	35.63	35.837	0	0.078639	1.67E-05	NaN	166.45	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5820200			11168	6564	6477	6518							-0.10556905075418399
FSSYSAMGWY	10	Unmodified	_FSSYSAMGWY_					0	0	0		ENST00000378244.6_1_12:100657547-100657670:-|nuORF	ENST00000378244.6_1_12:100657547-100657670:-|nuORF	ENST00000378244.6_1_12:100657547-100657670:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	599.7482299804688	2	599.747324	1197.4801	0.4793	0.00028746	1.4567	0.00087367	1.936	0.0011611	599.7481156137782	16.447	0.15616	16.447	16.369	16.525	0					6	2	3	0	0	0	0.77749	1	5560	5560		13.906	0	1	4376700			11169	7539	6478	6519	10779	10779					-0.11074486425059149
FSSYSAMGWY	10	Unmodified	_FSSYSAMGWY_					0	0	0		ENST00000378244.6_1_12:100657547-100657670:-|nuORF	ENST00000378244.6_1_12:100657547-100657670:-|nuORF	ENST00000378244.6_1_12:100657547-100657670:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	599.747324	1197.4801	0.70061	0.00042019	1.1062	0.00066341	1.8068	0.0010836	599.7478886312302	17.093	0.36497	16.743	16.613	16.978	-0.34933	0.14815	-4.1135E-05	NaN	13.906	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38631000			11170	7539	6478	6519							-0.11074486425059149
FSVNFKLRK	9	Unmodified	_FSVNFKLRK_					0	0	0			REV__ENST00000368346.7_1_1:155305486-155305633:-|nuORF	REV__ENST00000368346.7_1_1:155305486-155305633:-|nuORF	MSMS	HCT116MG_D190212_S3	3	380.227783203125	3	380.229231	1137.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.78	1	58.515	58.015	59.015	-0.26405								0	0	0	0.76875	1	22368	22368		5.2969	2.5617	1		+		11171	15131	6479	6520	10780	10780					0.10253703876537656
FSWHRYEHGRF	11	Unmodified	_FSWHRYEHGRF_					0	0	0		ENST00000483222.5_1_22:50686861-50687933:-|nuORF;ENST00000496909.5_1_22:50687618-50689256:-|nuORF;ENST00000415993.5_1_22:50686492-50688322:-|nuORF;ENST00000497036.5_1_22:50687618-50688730:-|nuORF;ENST00000498366.5_1_22:50686861-50689256:-|nuORF;nc|ENSG00000100429|Q969S8-5|HDAC10;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	ENST00000483222.5_1_22:50686861-50687933:-|nuORF	ENST00000483222.5_1_22:50686861-50687933:-|nuORF	MSMS	HCT116MG_D190212_S1	1	507.90972900390625	3	507.909331	1520.70617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.455	1	11.455	10.955	11.955	0								0	0	0	0.96208	1	3607	3607		0	0	1				11172	1709	6480	6521	10781	10781					-0.03335981471013838
FSWLRKIVVGP	11	Unmodified	_FSWLRKIVVGP_					0	0	0			REV__ENST00000359227.7_1_19:11563316-11563478:-|nuORF	REV__ENST00000359227.7_1_19:11563316-11563478:-|nuORF	MSMS	HCT116MG_D190212_S2	2	651.366455078125	2	651.390065	1300.76558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.241	1	43.167	42.667	43.667	-0.073376								0	0	0	0.95581	1	16390	16390		3.2813	0.28607	1		+		11173	15071	6481	6522	10782	10782					0.1272252149049109
FSWMFSIFRSK	11	Unmodified	_FSWMFSIFRSK_					0	0	0		MAGT1|p.L318F|2|0.65|ENSG00000102158|chrX:77830845-77830845|G/A|missense_variant	MAGT1|p.L318F|2|0.65|ENSG00000102158|chrX:77830845-77830845|G/A|missense_variant	MAGT1|p.L318F|2|0.65|ENSG00000102158|chrX:77830845-77830845|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	479.2436828613281	3	479.244552	1434.71183	0.23411	0.0001122	-1.0844	-0.00051967	-0.85025	-0.00040748	479.5782756240067	15.195	0.5197	15.278	14.934	15.454	0.083271					14	9	2	0	0	0	0.74191	1	4939	4939		2.2527	0.32522	1	1165200			11174	9312	6482	6523	10783	10783					0.011859809964789747
FSWMFSIFRSK	11	Unmodified	_FSWMFSIFRSK_					0	0	0		MAGT1|p.L318F|2|0.65|ENSG00000102158|chrX:77830845-77830845|G/A|missense_variant	MAGT1|p.L318F|2|0.65|ENSG00000102158|chrX:77830845-77830845|G/A|missense_variant	MAGT1|p.L318F|2|0.65|ENSG00000102158|chrX:77830845-77830845|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	479.244552	1434.71183	-0.26561	-0.00012729	-1.2357	-0.00059218	-1.5013	-0.00071948	479.24393145489665	15.297	0.58611	15.136	14.677	15.263	-0.16173	-0.071304	-7.4528E-05	NaN	2.2527	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	859050			11175	9312	6482	6523							0.011859809964789747
FTADCPIFYPP	11	Unmodified	_FTADCPIFYPP_					0	0	0		ENSG00000106479|ENST00000223210|ZNF862;ENST00000488265.1_1_7:149545263-149547465:+|nuORF;ZNF862|p.G246Rfs*7|1|0.22|ENSG00000106479|chr7:149848221-149848222|-/C|frameshift_variant;ZNF862|p.D271Mfs*9|2|0.42|ENSG00000106479|chr7:149848298-149848298|G/-|frameshift_variant	ENSG00000106479|ENST00000223210|ZNF862	ENSG00000106479|ENST00000223210|ZNF862	MSMS	HCT116MG_D190212_S2	2	635.7968139648438	2	635.794275	1269.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.331	1	35.188	34.688	35.688	-0.14245								0	0	0	0.95023	1	13175	13175		6.2058	0.47393	1				11176	2082	6483	6524	10784	10784					-0.050007673228037675
FTAIMLKKSR	10	Unmodified	_FTAIMLKKSR_					0	0	0		ENST00000478285.1_1_6:24654627-24658985:-|nuORF;nc|ENSG00000111802|O95551-3|TDP2;ENSG00000111802|ENST00000378198|TDP2;nc|ENSG00000111802|O95551-2|TDP2	ENST00000478285.1_1_6:24654627-24658985:-|nuORF	ENST00000478285.1_1_6:24654627-24658985:-|nuORF	MSMS	HCT116MG_D190212_S2	2	597.8060302734375	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.655	1	55.47	54.97	55.97	-0.18565								0	0	0	0.92272	1	21458	21458		10.824	0	1				11177	2316	6484	6525	10785	10785					0.10634899830392897
FTAKSPLMY	9	Unmodified	_FTAKSPLMY_					0	0	0		ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	MSMS	HCT116MG_D190212_S2	2	529.2732543945312	2	529.272978	1056.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.372	1	43.299	42.799	43.799	-0.073376								0	0	0	0.04525	1	16443	16443		71.708	42.626	1				11178	2463	6485	6526	10786	10786					0.005398823396262742
FTAVLNKTFAT	11	Unmodified	_FTAVLNKTFAT_					0	0	0			REV__ENSG00000165494|ENST00000690938|PCF11	REV__ENSG00000165494|ENST00000690938|PCF11	MULTI-SECPEP	HCT116MG_D190212_S1	1	606.4058227539062	2	606.834788	1211.65502	0.58898	0.00035741	-0.20139	-0.00012221	0.38759	0.0002352	606.8347885227948	53.008	0.20482	53.008	52.845	53.05	0					5	3	2	0	0	0	0.36574	1	20237	20237		0.26902	0	1	11720000	+		11179	13055	6486	6527	10787	10787					0.05766256711604001
FTAVSLRSLHY	11	Unmodified	_FTAVSLRSLHY_					0	0	0		nc|ENSG00000161031|Q96PD5-2|PGLYRP2	nc|ENSG00000161031|Q96PD5-2|PGLYRP2	nc|ENSG00000161031|Q96PD5-2|PGLYRP2	MSMS	HCT116MG_D190212_S3	3	647.3764038085938	2	647.351137	1292.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.822	1	54.526	54.026	55.026	-0.29587								0	0	0	0.94538	1	20782	20782		8.7454	0.58988	1				11180	9518	6487	6528	10788	10788					0.053084638344671475
FTDCQWSEPI	10	Unmodified	_FTDCQWSEPI_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MSMS	HCT116MG_D190212_S2	2	613.4686889648438	2	613.263339	1224.51212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.751	1	49.588	49.088	50.088	-0.16369								0	0	0	0.92272	1	19050	19050		10.824	0	1		+		11181	10879	6488	6529	10789	10789					-0.09115118741920014
FTDEEGYGRY	10	Unmodified	_FTDEEGYGRY_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3471092-3471287:-|nuORF;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	HCT116MG_D190212_S2	2	618.7623901367188	2	618.762017	1235.50948	0.61223	0.00037882	1.168	0.00072269	1.7802	0.0011015	618.7625092051547	31.359	0.31001	31.11	30.888	31.198	-0.24883					11	5	3	0	0	0	0.041964	1	11578	11578		93.166	47.145	1	20053000			11182	5717	6489	6530	10790	10790					-0.09885250875231577
FTDEEGYGRYL	11	Unmodified	_FTDEEGYGRYL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000446317.1_1_20:3471092-3471287:-|nuORF;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	HCT116MG_D190212_S2	2	675.3043823242188	2	675.304049	1348.59355	0.38724	0.00026151	0.00032111	2.1685E-07	0.38756	0.00026172	675.303830930417	43.529	0.20615	43.456	43.355	43.561	-0.073372					5	3	2	0	0	0	0.034456	1	16536	16536		110.79	84.525	1	15722000			11183	5717	6490	6531	10791	10791					-0.06680719778319144
FTDEYKKMCS	10	Unmodified	_FTDEYKKMCS_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MSMS	HCT116MG_D190212_S1	1	626.2731323242188	2	626.272849	1250.53115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.168	1	22.168	21.668	22.668	0								0	0	0	0.5023	1	7835	7835		47.594	12.662	1		+		11184	10802	6491	6532	10792	10792					-0.08409905442499621
FTDEYKKMCS	10	Unmodified	_FTDEYKKMCS_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	626.2731323242188	2	626.272849	1250.53115	0.68875	0.00043135	-0.20039	-0.0001255	0.48836	0.00030585	626.7740934773509	22.141	0.20901	22.141	22.011	22.22	0					5	3	2	0	0	0	0.22419	1	7835	7835		47.594	12.662	1	6677700	+		11185	10802	6491	6532	10793	10793					-0.08409905442499621
FTDEYKKMCS	10	Unmodified	_FTDEYKKMCS_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	626.273681640625	2	626.272849	1250.53115	0.57158	0.00035797	-0.4015	-0.00025145	0.17008	0.00010652	626.2729913949344	22.669	0.20778	22.284	22.154	22.362	-0.3852					11	3	4	0	0	0	0.33238	1	8055	8055		47.594	12.662	1	34700000	+		11186	10802	6491	6532	10794	10794					-0.08409905442499621
FTDEYKKMCS	10	Unmodified	_FTDEYKKMCS_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	417.8507995605469	3	417.850992	1250.53115	0.053523	2.2365E-05	-0.4766	-0.00019915	-0.42307	-0.00017678	417.85087099531216	22.669	0.31136	22.284	22.051	22.362	-0.3852					7	5	2	0	0	0	0.68559	1	8066	8066		14.838	8.6035	1	21987000	+		11187	10802	6491	6532	10795	10795					-0.08409905442499621
FTDEYKKMCS	10	Unmodified	_FTDEYKKMCS_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		3	417.850992	1250.53115	-0.019014	-7.9449E-06	-0.31967	-0.00013357	-0.33868	-0.00014152	417.85086921330776	22.141	0.15683	22.141	22.011	22.167	0	-0.040358	-0.00027513	NaN	14.838	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5149100	+		11188	10802	6491	6532							-0.08409905442499621
FTDEYKKMCS	10	Unmodified	_FTDEYKKMCS_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	626.272849	1250.53115	0.57158	0.00035797	-0.4015	-0.00025145	0.17008	0.00010652	626.2729913949344	22.669	0.20778	22.284	22.154	22.362	-0.3852	0.10219	-0.00042762	NaN	47.594	11	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34700000	+		11189	10802	6491	6532							-0.08409905442499621
FTDEYKKMCS	10	Unmodified	_FTDEYKKMCS_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	417.850992	1250.53115	0.053523	2.2365E-05	-0.4766	-0.00019915	-0.42307	-0.00017678	417.85087099531216	22.669	0.31136	22.284	22.051	22.362	-0.3852	0.10219	-0.00047185	NaN	14.838	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21987000	+		11190	10802	6491	6532							-0.08409905442499621
FTDEYKKMCS	10	Unmodified	_FTDEYKKMCS_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	626.272849	1250.53115	0.42013	0.00026312	0.47835	0.00029958	0.89848	0.00056269	626.2729001870226	22.119	0.20809	22.12	21.99	22.198	0.00074577	-0.061831	0.00067443	NaN	47.594	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4321000	+		11191	10802	6491	6532							-0.08409905442499621
FTDEYKKMCS	10	Unmodified	_FTDEYKKMCS_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	417.850992	1250.53115	0.061282	2.5607E-05	0.16086	6.7214E-05	0.22214	9.2821E-05	417.8509363208311	22.119	0.20809	22.12	21.99	22.198	0.00074577	-0.061831	0.00032724	NaN	14.838	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2513300	+		11192	10802	6491	6532							-0.08409905442499621
FTDGITRTY	9	Unmodified	_FTDGITRTY_					0	0	0		ENST00000294309.7_2_11:68821527-68822650:+|nuORF	ENST00000294309.7_2_11:68821527-68822650:+|nuORF	ENST00000294309.7_2_11:68821527-68822650:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	537.2835083007812	2	537.266739	1072.51892	0.4847	0.00026042	0.045583	2.449E-05	0.53029	0.00028491	537.2664199863312	33.879	0.15574	33.585	33.455	33.611	-0.29419					4	2	2	0	0	0	0.20204	1	12422	12422		28.495	5.3461	1	3208700			11193	6967	6492	6533	10796	10796					-0.014434377990255598
FTDGITRTY	9	Unmodified	_FTDGITRTY_					0	0	0		ENST00000294309.7_2_11:68821527-68822650:+|nuORF	ENST00000294309.7_2_11:68821527-68822650:+|nuORF	ENST00000294309.7_2_11:68821527-68822650:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	537.266739	1072.51892	0.70224	0.00037729	-0.36462	-0.0001959	0.33763	0.0001814	537.2665170909112	33.649	0.20773	33.456	33.327	33.534	-0.19297	-0.064368	-0.00016304	NaN	28.495	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13136000			11194	6967	6492	6533							-0.014434377990255598
FTDIDGQVY	9	Unmodified	_FTDIDGQVY_					0	0	0		ENST00000497136.6_1_10:122626245-122665534:+|nuORF;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant;ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF;WDR11|p.V841Cfs*15|1|0.07|ENSG00000120008|chr10:120900034-120900034|G/-|frameshift_variant	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	1057.4844970703125	1	1057.48367	1056.47639	0.67722	0.00071615	1.8505	0.0019569	2.5278	0.0026731	1057.4849664545363	42.234	0.20757	41.93	41.78	41.987	-0.30352					5	3	2	0	0	0	0.10959	1	15732	15732		71.134	30.685	1	7218000			11195	2678	6493	6534	10797	10797					-0.049588329272637566
FTDIDGQVY	9	Unmodified	_FTDIDGQVY_					0	0	0		ENST00000497136.6_1_10:122626245-122665534:+|nuORF;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant;ENSG00000120008|ENST00000263461|WDR11;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF;WDR11|p.V841Cfs*15|1|0.07|ENSG00000120008|chr10:120900034-120900034|G/-|frameshift_variant	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1057.485595703125	1	1057.48367	1056.47639	0.59506	0.00062927	-1.5248	-0.0016124	-0.92972	-0.00098316	1057.4801835669732	42.319	0.31129	41.944	41.787	42.098	-0.37565					7	5	2	0	0	0	0.057285	1	15552	15552		71.134	37.031	1	2183800			11196	2678	6493	6534	10798	10798					-0.049588329272637566
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S1	1	576.8060913085938	2	576.806031	1151.59751	0.44442	0.00025635	0.054384	3.1369E-05	0.49881	0.00028771	576.8059791955693	22.475	0.31305	22.475	22.272	22.585	0					14	5	4	0	0	0	0.00046881	1	7954	7954		195.45	140.22	1	23128000			11197	2954	6494	6535	10799	10799					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S1	1	384.8728332519531	3	384.873113	1151.59751	-0.12648	-4.868E-05	-0.1268	-4.8802E-05	-0.25328	-9.7481E-05	384.87306692665624	22.501	0.36523	22.501	22.22	22.585	0					13	6	3	0	0	0	0.023778	1	7959	7959		75.571	18.321	1	20911000			11198	2954	6494	6535	10800	10800					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S2	2	576.8063354492188	2	576.806031	1151.59751	0.33681	0.00019427	0.20003	0.00011538	0.53684	0.00030965	576.8060495222187	23.189	0.36389	22.804	22.622	22.986	-0.3852					17	6	4	0	0	0	0.0029864	2	8253	8208;8253		181.69	119.12	1	215910000			11199	2954	6494	6535	10801;10802	10802					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S2	2	384.87310791015625	3	384.873113	1151.59751	-0.099607	-3.8336E-05	0.15842	6.0972E-05	0.058813	2.2636E-05	384.8731291230417	23.189	0.36389	22.804	22.622	22.986	-0.3852					17	6	4	0	0	0	0.026999	1	8254	8254		81.915	39.603	1	150820000			11200	2954	6494	6535	10803	10803					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S3	3	385.207275390625	3	384.873113	1151.59751	-0.092998	-3.5792E-05	-0.26817	-0.00010321	-0.36117	-0.000139	384.87303250334907	22.276	0.93762	22.276	21.729	22.667	0.00074577					22	17	2	0	0	0	0.026999	1	7813	7813		73.196	30.884	1	20663000			11201	2954	6494	6535	10804	10804					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S3	3	576.8059692382812	2	576.806031	1151.59751	0.42738	0.00024651	-0.2225	-0.00012834	0.20488	0.00011818	576.8057153340685	22.293	0.26058	22.293	22.146	22.407	0.00074387					7	4	2	0	0	0	0.011082	1	7817	7817		110.67	64.975	1	14812000			11202	2954	6494	6535	10805	10805					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MULTI-MSMS	HCT116MG_D190212_S4	4	576.8062744140625	2	576.806031	1151.59751	0.27995	0.00016148	0.23262	0.00013418	0.51257	0.00029566	576.8060477996111	22.709	0.26157	22.471	22.341	22.603	-0.23758					7	4	2	0	0	0	0.016744	1	7937	7937		99.755	59.806	1	5255400			11203	2954	6494	6535	10806	10806					0.027774145060675437
FTDKSAEDY	9	Unmodified	_FTDKSAEDY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MSMS	HCT116MG_D190212_S2	2	538.2344970703125	2	538.232561	1074.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.714	1	25.345	24.845	25.845	-0.36914								0	0	0	0.24671	1	9272	9272		43.982	15.495	1				11204	4051	6495	6536	10807	10807					-0.08367727169547834
FTDKSAEDY	9	Unmodified	_FTDKSAEDY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENSG00000149269|ENST00000356341|PAK1	ENSG00000149269|ENST00000356341|PAK1	MULTI-SECPEP	HCT116MG_D190212_S3	3	538.2991333007812	2	538.232561	1074.45057	0.56591	0.00030459	-0.071797	-3.8644E-05	0.49412	0.00026595	538.2321751523472	25.44	0.15588	25.334	25.256	25.412	-0.10618					4	2	2	0	0	0	0.19861	1	9093	9093		24.882	10.976	1	3349500			11205	4051	6495	6536	10808	10808					-0.08367727169547834
FTDPGQVAY	9	Unmodified	_FTDPGQVAY_					0	0	0		PRDM10|p.D93Rfs*13|1|0.13|ENSG00000170325|chr11:129955529-129955530|-/T|frameshift_variant;PRDM10|p.L210Wfs*5|3|0.24|ENSG00000170325|chr11:129944905-129944905|G/-|frameshift_variant;nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10	PRDM10|p.D93Rfs*13|1|0.13|ENSG00000170325|chr11:129955529-129955530|-/T|frameshift_variant	PRDM10|p.D93Rfs*13|1|0.13|ENSG00000170325|chr11:129955529-129955530|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	997.4623413085938	1	997.462538	996.455261	0.35312	0.00035223	-0.062058	-6.1901E-05	0.29107	0.00029033	997.4619910253608	37.666	0.25659	37.563	37.435	37.692	-0.10318					8	4	2	0	0	0	0.0066233	1	14150	14150		123.45	62.093	1	39268000			11206	5124	6496	6537	10809	10809					-0.04310798236133451
FTDPGQVAY	9	Unmodified	_FTDPGQVAY_					0	0	0		PRDM10|p.D93Rfs*13|1|0.13|ENSG00000170325|chr11:129955529-129955530|-/T|frameshift_variant;PRDM10|p.L210Wfs*5|3|0.24|ENSG00000170325|chr11:129944905-129944905|G/-|frameshift_variant;nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10	PRDM10|p.D93Rfs*13|1|0.13|ENSG00000170325|chr11:129955529-129955530|-/T|frameshift_variant	PRDM10|p.D93Rfs*13|1|0.13|ENSG00000170325|chr11:129955529-129955530|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	998.467041015625	1	997.462538	996.455261	0.63976	0.00063813	0.29028	0.00028954	0.93004	0.00092768	997.4627388797319	37.865	0.22997	37.564	37.5	37.729	-0.30137					20	12	2	0	0	0	0.11023	1	14005	14005		56.177	33.029	1	16279000			11207	5124	6496	6537	10810	10810					-0.04310798236133451
FTDPRTMGY	9	Unmodified	_FTDPRTMGY_					0	0	0		ENST00000567697.1_1_16:8904837-8941679:+|nuORF;ENSG00000140650|ENST00000268261|PMM2	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	544.2488403320312	2	544.247492	1086.48043	0.6301	0.00034293	0.54992	0.00029929	1.18	0.00064222	544.2478769220241	36.536	0.51826	36.421	36.032	36.55	-0.11478					12	9	2	0	0	0	0.056114	1	13680	13680		71.708	31.751	1	19349000			11208	3680	6497	6538	10811	10811					-0.05935066705205827
FTDPRTMGY	9	Unmodified	_FTDPRTMGY_					0	0	0		ENST00000567697.1_1_16:8904837-8941679:+|nuORF;ENSG00000140650|ENST00000268261|PMM2	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	544.248291015625	2	544.247492	1086.48043	0.35146	0.00019128	0.60315	0.00032826	0.95461	0.00051955	544.749275793422	36.758	0.46835	36.457	36.093	36.561	-0.30113					14	8	2	0	0	0	0.064006	1	13599	13599		67.838	27.881	1	5038100			11209	3680	6497	6538	10812	10812					-0.05935066705205827
FTDVNSILRY	10	Unmodified	_FTDVNSILRY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S2	2	614.3218994140625	2	614.322045	1226.62954	0.044471	2.732E-05	-0.27194	-0.00016706	-0.22746	-0.00013974	614.3218852673921	49.791	0.25462	49.627	49.483	49.737	-0.16369					8	4	2	0	0	0	0.023406	1	19085	19085		114.2	79.8	1	59856000			11210	3424	6498	6539	10813	10813					0.025287821891879503
FTDVNSILRY	10	Unmodified	_FTDVNSILRY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	614.322045	1226.62954	0.40646	0.0002497	-0.6217	-0.00038193	-0.21525	-0.00013223	614.3209045610798	49.621	0.15504	49.621	49.492	49.647	0	-0.0032667	-0.00040695	NaN	114.2	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14095000			11211	3424	6498	6539							0.025287821891879503
FTEDALGLRY	10	Unmodified	_FTEDALGLRY_					0	0	0		ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	MULTI-SECPEP	HCT116MG_D190212_S2	2	592.3906860351562	2	592.800946	1183.58734	0.78259	0.00046392	0.18531	0.00010985	0.9679	0.00057377	592.801128438272	47.226	0.25924	47.104	46.922	47.182	-0.12175					6	4	2	0	0	0	0.21782	1	18019	18019		30.637	17.594	1	13990000			11212	6270	6499	6540	10814	10814					0.0028880678080440703
FTEDHYVEF	9	Unmodified	_FTEDHYVEF_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MSMS	HCT116MG_D190212_S2	2	593.7554321289062	2	593.756204	1185.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.941	1	44.851	44.351	45.351	-0.090096								0	0	0	0.46109	1	17079	17079		30.637	13.524	1				11213	3894	6500	6541	10815	10815					-0.08747447898554128
FTEDHYVEF	9	Unmodified	_FTEDHYVEF_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	593.8042602539062	2	593.756204	1185.49785	0.84199	0.00049994	-0.99019	-0.00058793	-0.14819	-8.7991E-05	593.754979689343	44.853	0.20686	44.768	44.639	44.846	-0.084797					5	3	2	0	0	0	0.15894	1	17025	17025		37.974	24.932	1	13410000			11214	3894	6500	6541	10816	10816					-0.08747447898554128
FTEEQAVLY	9	Unmodified	_FTEEQAVLY_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	HCT116MG_D190212_S2	2	550.269287109375	2	550.268947	1098.52334	0.36068	0.00019847	0.096578	5.3144E-05	0.45726	0.00025161	550.2688443755027	45.426	0.30935	45.334	45.153	45.462	-0.092472					9	5	2	0	0	0	0.069315	1	17305	17305		65.235	25.278	1	18135000			11215	4960	6501	6542	10817	10817					-0.021979733761327225
FTEEQAVLY	9	Unmodified	_FTEEQAVLY_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MSMS	HCT116MG_D190212_S3	3	550.2686157226562	2	550.268947	1098.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.725	1	45.414	44.914	45.914	-0.31094								0	0	0	0.21855	1	17128	17128		46.021	19.137	1				11216	4960	6501	6542	10818	10818					-0.021979733761327225
FTEGRDQGSAY	11	Unmodified	_FTEGRDQGSAY_					0	0	0		nc|ENSG00000103855|Q5ZPR3-3|CD276;nc|ENSG00000103855|Q5ZPR3-4|CD276;ENSG00000103855|ENST00000318443|CD276	nc|ENSG00000103855|Q5ZPR3-3|CD276	nc|ENSG00000103855|Q5ZPR3-3|CD276	MULTI-MSMS	HCT116MG_D190212_S2	2	615.810302734375	2	615.772916	1229.53128	0.58524	0.00036038	0.52616	0.000324	1.1114	0.00068437	615.7731436235758	23.996	0.15538	23.613	23.508	23.663	-0.38324					4	2	2	0	0	0	0.72373	1	8564	8564		13.042	2.9685	1	3669300			11217	9412	6502	6543	10819	10819					-0.07430446126636525
FTEKQRMKY	9	Unmodified	_FTEKQRMKY_					0	0	0		nc|ENSG00000180071|Q8IVF6-2|ANKRD18A;ENSG00000180071|ENST00000399703|ANKRD18A	nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	MSMS	HCT116MG_D190212_S2	2	410.8816833496094	3	410.881502	1229.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.501	1	21.117	20.617	21.617	-0.38398								0	0	0	0.403	1	7570	7570		33.445	14.724	1				11218	5582	6503	6544	10820	10820					0.017051460369657434
FTEKQRMKY	9	Unmodified	_FTEKQRMKY_					0	0	0		nc|ENSG00000180071|Q8IVF6-2|ANKRD18A;ENSG00000180071|ENST00000399703|ANKRD18A	nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	MSMS	HCT116MG_D190212_S2	2	615.8189697265625	2	615.818615	1229.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.512	1	21.128	20.628	21.628	-0.38446								0	0	0	0.76698	1	7575	7575		16.149	3.1066	1				11219	5582	6503	6544	10821	10821					0.017051460369657434
FTELHELSKEY	11	Unmodified	_FTELHELSKEY_					0	0	0			REV__MYH7|p.E1490K|1|0.41|ENSG00000092054|chr14:23417204-23417204|C/T|missense_variant	REV__MYH7|p.E1490K|1|0.41|ENSG00000092054|chr14:23417204-23417204|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	698.408447265625	2	698.343175	1394.6718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.829	1	38.528	38.028	39.028	-0.30137								0	0	0	0.95113	1	14397	14397		5.7319	0	1		+		11220	17049	6504	6545	10822	10822					-0.009752871930913898
FTENDKEYQEY	11	Unmodified	_FTENDKEYQEY_					0	0	0		ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC	ENSG00000235272|ENST00000444122|RAMACL	ENSG00000235272|ENST00000444122|RAMACL	MULTI-MSMS	HCT116MG_D190212_S1	1	733.3102416992188	2	733.309529	1464.6045	0.69074	0.00050653	0.37795	0.00027716	1.0687	0.00078368	733.3098725385655	29.91	0.26002	29.91	29.737	29.997	0					9	4	3	0	0	0	0.0050123	1	10960	10960		139.98	114.99	1	14152000			11221	5082	6505	6546	10823	10823					-0.10921362194676476
FTENDKEYQEY	11	Unmodified	_FTENDKEYQEY_					0	0	0		ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC	ENSG00000235272|ENST00000444122|RAMACL	ENSG00000235272|ENST00000444122|RAMACL	MULTI-MSMS	HCT116MG_D190212_S2	2	733.3098754882812	2	733.309529	1464.6045	0.64512	0.00047307	0.20211	0.00014821	0.84723	0.00062128	733.309648573925	30.132	0.30954	29.848	29.667	29.976	-0.28453					13	5	4	0	0	0	2.1994E-15	1	11066	11066		224.31	182.35	1	119010000			11222	5082	6505	6546	10824	10824					-0.10921362194676476
FTENDKEYQEY	11	Unmodified	_FTENDKEYQEY_					0	0	0		ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC	ENSG00000235272|ENST00000444122|RAMACL	ENSG00000235272|ENST00000444122|RAMACL	MULTI-MSMS	HCT116MG_D190212_S3	3	733.3097534179688	2	733.309529	1464.6045	0.44281	0.00032471	0.039703	2.9115E-05	0.48251	0.00035383	733.309869418387	30.316	0.24845	30.067	29.913	30.162	-0.24946					8	6	2	0	0	0	5.3824E-10	1	11048	11048		199.17	167.13	1	18207000			11223	5082	6505	6546	10825	10825					-0.10921362194676476
FTEPNRHFY	9	Unmodified	_FTEPNRHFY_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	HCT116MG_D190212_S2	2	605.7854614257812	2	605.78563	1209.55671	0.93219	0.00056471	-0.55676	-0.00033728	0.37542	0.00022743	605.7853272298851	31.497	0.3115	31.248	31.147	31.458	-0.24883					8	5	2	0	0	0	0.066823	1	11668	11668		66.457	42.436	1	6286000			11224	4768	6506	6547	10826	10826					-0.039689268135816747
FTEQWTDGY	9	Unmodified	_FTEQWTDGY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-SECPEP	HCT116MG_D190212_S1	1	574.3267822265625	2	573.740554	1145.46655	0.44567	0.0002557	0.30616	0.00017566	0.75183	0.00043136	573.7404485523356	45.649	0.26217	45.649	45.503	45.765	0					7	4	2	0	0	0	0.24622	1	17279	17279		16.942	12.186	1	7149600			11225	3965	6507	6548	10827	10827					-0.10036020932670908
FTEQWTDGY	9	Unmodified	_FTEQWTDGY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	HCT116MG_D190212_S2	2	573.74072265625	2	573.740554	1145.46655	0.34892	0.00020019	0.06713	3.8515E-05	0.41605	0.0002387	573.7405638718903	45.734	0.41003	45.632	45.505	45.915	-0.1014					11	7	2	0	0	0	0.012496	1	17412	17412		107.19	76.962	1	39833000			11226	3965	6507	6548	10828	10828					-0.10036020932670908
FTEQWTDGY	9	Unmodified	_FTEQWTDGY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	HCT116MG_D190212_S2	2	1146.47412109375	1	1146.47383	1145.46655	0.51805	0.00059393	0.85547	0.00098077	1.3735	0.0015747	1146.4746672580186	45.703	0.25637	45.601	45.453	45.71	-0.1014					7	4	2	0	0	0	0.0027398	1	17414	17414		183.04	150.25	1	15455000			11227	3965	6507	6548	10829	10829					-0.10036020932670908
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.A184V|1|0.5|ENSG00000173914|chr11:66669153-66669153|G/A|missense_variant	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	HCT116MG_D190212_S1	1	611.2571411132812	2	611.256568	1220.49858	0.62386	0.00038134	0.20631	0.00012611	0.83017	0.00050745	611.2566968624812	32.836	0.29427	32.836	32.742	33.037	0					14	5	3	0	0	0	0.0035731	1	12147	12147		174.73	141.94	1	30715000			11228	5312	6508	6549	10830	10830					-0.10284653249505027
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.A184V|1|0.5|ENSG00000173914|chr11:66669153-66669153|G/A|missense_variant	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	HCT116MG_D190212_S2	2	611.2573852539062	2	611.256568	1220.49858	0.73132	0.00044702	-0.20837	-0.00012737	0.52295	0.00031966	611.2563727814003	32.976	0.36152	32.765	32.586	32.948	-0.21135					12	6	2	0	0	0	0.023938	1	12209	12209		92.491	58.09	1	218160000			11229	5312	6508	6549	10831	10831					-0.10284653249505027
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.A184V|1|0.5|ENSG00000173914|chr11:66669153-66669153|G/A|missense_variant	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	HCT116MG_D190212_S2	2	1221.5059814453125	1	1221.50586	1220.49858	0.75429	0.00092137	-0.35767	-0.00043689	0.39662	0.00048447	1221.5056710033284	32.976	0.20715	32.765	32.638	32.845	-0.21135					6	3	2	0	0	0	0.0057285	1	12231	12231		131.27	83.519	1	26966000			11230	5312	6508	6549	10832	10832					-0.10284653249505027
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.A184V|1|0.5|ENSG00000173914|chr11:66669153-66669153|G/A|missense_variant	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	HCT116MG_D190212_S3	3	611.2586059570312	2	611.256568	1220.49858	0.58261	0.00035612	0.45111	0.00027575	1.0337	0.00063187	611.2567477757241	33.227	0.36246	32.94	32.84	33.203	-0.28745					46	16	4	0	0	0	0.0090481	2	12169	12169;12254		115.69	91.671	1	102930000			11231	5312	6508	6549	10833;10834	10833					-0.10284653249505027
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.A184V|1|0.5|ENSG00000173914|chr11:66669153-66669153|G/A|missense_variant	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	HCT116MG_D190212_S4	4	611.257080078125	2	611.256568	1220.49858	1.0565	0.0006458	0.15984	9.7703E-05	1.2163	0.0007435	611.2566457483919	33.214	0.17094	32.832	32.772	32.943	-0.38223					37	19	2	0	0	0	0.031089	1	12090	12090		85.272	57.643	1	29660000			11232	5312	6508	6549	10835	10835					-0.10284653249505027
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.A184V|1|0.5|ENSG00000173914|chr11:66669153-66669153|G/A|missense_variant	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1221.50586	1220.49858	0.79297	0.00096862	-0.39788	-0.00048602	0.39508	0.0004826	1222.5075694299214	32.884	0.13897	32.884	32.794	32.933	0	0.059386	-2.5024E-05	NaN	131.27	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3442200			11233	5312	6508	6549							-0.10284653249505027
FTESQKTKY	9	Unmodified	_FTESQKTKY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;DDX24|p.L800P|1|0.11|ENSG00000089737|chr14:94051372-94051372|A/G|missense_variant;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S1	1	566.2879638671875	2	566.287671	1130.56079	0.24112	0.00013654	0.50045	0.0002834	0.74157	0.00041994	566.2876680636364	19.209	0.20807	19.209	19.079	19.287	0					8	3	3	0	0	0	0.0039465	1	6660	6660		151.48	99.211	1	10622000			11234	1532	6509	6550	10836	10836					0.0007311788947390596
FTESQKTKY	9	Unmodified	_FTESQKTKY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;DDX24|p.L800P|1|0.11|ENSG00000089737|chr14:94051372-94051372|A/G|missense_variant;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S1	1	377.8609619140625	3	377.860873	1130.56079	-0.2414	-9.1214E-05	0.2651	0.00010017	0.023706	8.9577E-06	377.8609443929648	19.209	0.20807	19.209	19.079	19.287	0					7	3	3	0	0	0	0.34272	1	6671	6671		30.703	22.259	1	5875400			11235	1532	6509	6550	10837	10837					0.0007311788947390596
FTESQKTKY	9	Unmodified	_FTESQKTKY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;DDX24|p.L800P|1|0.11|ENSG00000089737|chr14:94051372-94051372|A/G|missense_variant;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S2	2	566.2877197265625	2	566.287671	1130.56079	0.4014	0.00022731	-0.063952	-3.6215E-05	0.33744	0.00019109	566.2875706059326	19.879	0.2592	19.504	19.351	19.61	-0.37503					11	4	4	0	0	0	0.0037246	1	6930	6930		154.75	100.92	1	34598000			11236	1532	6509	6550	10838	10838					0.0007311788947390596
FTESQKTKY	9	Unmodified	_FTESQKTKY_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;DDX24|p.L800P|1|0.11|ENSG00000089737|chr14:94051372-94051372|A/G|missense_variant;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MSMS	HCT116MG_D190212_S2	2	377.8606262207031	3	377.860873	1130.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.915	1	19.539	19.039	20.039	-0.37503								0	0	0	0.050056	1	6932	6932		57.108	16.868	1				11237	1532	6509	6550	10839	10839					0.0007311788947390596
FTHAFSSMES	10	Unmodified	_FTHAFSSMES_					0	0	0		nc|ENSG00000262980|Q8NGH6|OR52L2P	nc|ENSG00000262980|Q8NGH6|OR52L2P	nc|ENSG00000262980|Q8NGH6|OR52L2P	MSMS	HCT116MG_D190212_S4	4	572.242919921875	2	572.242406	1142.47026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.536	1	53.201	52.701	53.701	-0.33473								0	0	0	0.92272	1	19991	19991		10.824	1.4408	1				11238	9658	6510	6551	10840	10840					-0.09527674430432853
FTHDELLK	8	Unmodified	_FTHDELLK_					0	0	0		ENST00000492638.1_1_21:45209510-45212627:+|nuORF;ENSG00000160214|ENST00000497547|RRP1	ENST00000492638.1_1_21:45209510-45212627:+|nuORF	ENST00000492638.1_1_21:45209510-45212627:+|nuORF	MSMS	HCT116MG_D190212_S4	4	501.7676086425781	2	501.766374	1001.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.173	1	51.828	51.328	52.328	-0.34538								0	0	0	0.8837	1	19441	19441		9.3474	0	1				11239	4435	6511	6552	10841	10841					0.017497675519166478
FTHSEKFTF	9	Unmodified	_FTHSEKFTF_					0	0	0		CCDC22|p.L438Afs*28|1|0.14|ENSG00000101997|chrX:49248501-49248502|-/A|frameshift_variant;ENSG00000101997|ENST00000376227|CCDC22	CCDC22|p.L438Afs*28|1|0.14|ENSG00000101997|chrX:49248501-49248502|-/A|frameshift_variant	CCDC22|p.L438Afs*28|1|0.14|ENSG00000101997|chrX:49248501-49248502|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	572.6082153320312	2	572.277106	1142.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.652	1	52.346	51.846	52.846	-0.30639								0	0	0	0.76669	1	19909	19909		12.532	3.1484	1				11240	349	6512	6553	10842	10842					-0.02590847419378406
FTHVNTTTSA	10	Unmodified	_FTHVNTTTSA_					0	0	0		NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant;NXPE4|p.H256Afs*5|1|0.04|ENSG00000137634|chr11:114582352-114582353|-/C|frameshift_variant;NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant;nc|ENSG00000204361|Q96DL1-3|NXPE2;NXPE2|p.K421Nfs*5|1|0.28|ENSG00000204361|chr11:114706508-114706508|A/-|frameshift_variant;ENSG00000137634|ENST00000375478|NXPE4;ENSG00000095110|ENST00000534921|NXPE1;ENSG00000204361|ENST00000389586|NXPE2	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	539.7615966796875	2	539.76182	1077.50909	0.59751	0.00032251	-0.33955	-0.00018328	0.25796	0.00013924	539.7615763716603	31.518	0.26031	31.518	31.388	31.648	0					9	4	3	0	0	0	0.24395	1	11616	11616		55.503	9.8031	1	9021100			11241	1603	6513	6554	10843	10843					-0.02656625804434043
FTHVNTTTSA	10	Unmodified	_FTHVNTTTSA_					0	0	0		NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant;NXPE4|p.H256Afs*5|1|0.04|ENSG00000137634|chr11:114582352-114582353|-/C|frameshift_variant;NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant;nc|ENSG00000204361|Q96DL1-3|NXPE2;NXPE2|p.K421Nfs*5|1|0.28|ENSG00000204361|chr11:114706508-114706508|A/-|frameshift_variant;ENSG00000137634|ENST00000375478|NXPE4;ENSG00000095110|ENST00000534921|NXPE1;ENSG00000204361|ENST00000389586|NXPE2	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7620239257812	2	539.76182	1077.50909	0.70018	0.00037793	-0.088455	-4.7745E-05	0.61173	0.00033019	539.7616940217496	31.681	0.46609	31.432	31.147	31.613	-0.24883					10	8	2	0	0	0	0.33238	1	11699	11699		47.594	5.7548	1	109760000			11242	1603	6513	6554	10844	10844					-0.02656625804434043
FTHVNTTTSA	10	Unmodified	_FTHVNTTTSA_					0	0	0		NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant;NXPE4|p.H256Afs*5|1|0.04|ENSG00000137634|chr11:114582352-114582353|-/C|frameshift_variant;NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant;nc|ENSG00000204361|Q96DL1-3|NXPE2;NXPE2|p.K421Nfs*5|1|0.28|ENSG00000204361|chr11:114706508-114706508|A/-|frameshift_variant;ENSG00000137634|ENST00000375478|NXPE4;ENSG00000095110|ENST00000534921|NXPE1;ENSG00000204361|ENST00000389586|NXPE2	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7619018554688	2	539.76182	1077.50909	0.38335	0.00020692	0.026601	1.4358E-05	0.40995	0.00022128	539.7617884636494	31.879	0.31236	31.609	31.378	31.69	-0.27027					11	5	3	0	0	0	0.33238	1	11665	11665		47.594	9.4188	1	24829000			11243	1603	6513	6554	10845	10845					-0.02656625804434043
FTHVNTTTSA	10	Unmodified	_FTHVNTTTSA_					0	0	0		NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant;NXPE4|p.H256Afs*5|1|0.04|ENSG00000137634|chr11:114582352-114582353|-/C|frameshift_variant;NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant;nc|ENSG00000204361|Q96DL1-3|NXPE2;NXPE2|p.K421Nfs*5|1|0.28|ENSG00000204361|chr11:114706508-114706508|A/-|frameshift_variant;ENSG00000137634|ENST00000375478|NXPE4;ENSG00000095110|ENST00000534921|NXPE1;ENSG00000204361|ENST00000389586|NXPE2	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	539.7620849609375	2	539.76182	1077.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.053	1	31.677	31.177	32.177	-0.37529								0	0	0	0.76396	1	11658	11658		33.445	0.65921	1				11244	1603	6513	6554	10846	10846					-0.02656625804434043
FTHVNTTTSA	10	Unmodified	_FTHVNTTTSA_					0	0	0		NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant;NXPE4|p.H256Afs*5|1|0.04|ENSG00000137634|chr11:114582352-114582353|-/C|frameshift_variant;NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant;nc|ENSG00000204361|Q96DL1-3|NXPE2;NXPE2|p.K421Nfs*5|1|0.28|ENSG00000204361|chr11:114706508-114706508|A/-|frameshift_variant;ENSG00000137634|ENST00000375478|NXPE4;ENSG00000095110|ENST00000534921|NXPE1;ENSG00000204361|ENST00000389586|NXPE2	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	539.76182	1077.50909	0.70018	0.00037793	-0.088455	-4.7745E-05	0.61173	0.00033019	539.7616940217496	31.681	0.46609	31.432	31.147	31.613	-0.24883	-0.087578	-5.2832E-05	NaN	55.503	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109760000			11245	1603	6513	6554							-0.02656625804434043
FTHVNTTTSA	10	Unmodified	_FTHVNTTTSA_					0	0	0		NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant;NXPE4|p.H256Afs*5|1|0.04|ENSG00000137634|chr11:114582352-114582353|-/C|frameshift_variant;NXPE1|p.E304Gfs*35|1|0.11|ENSG00000095110|chr11:114523075-114523076|TT/-|frameshift_variant;nc|ENSG00000204361|Q96DL1-3|NXPE2;NXPE2|p.K421Nfs*5|1|0.28|ENSG00000204361|chr11:114706508-114706508|A/-|frameshift_variant;ENSG00000137634|ENST00000375478|NXPE4;ENSG00000095110|ENST00000534921|NXPE1;ENSG00000204361|ENST00000389586|NXPE2	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	NXPE4|p.P250Rfs*9|1|0.39|ENSG00000137634|chr11:114582365-114582369|ACAGG/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	539.76182	1077.50909	0.38335	0.00020692	0.026601	1.4358E-05	0.40995	0.00022128	539.7617884636494	31.879	0.31236	31.609	31.378	31.69	-0.27027	0.089265	7.1374E-05	NaN	55.503	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24829000			11246	1603	6513	6554							-0.02656625804434043
FTIHRILPLT	10	Unmodified	_FTIHRILPLT_					0	0	0		TEK|p.P417Lfs*10|1|0.71|ENSG00000120156|chr9:27185547-27185547|C/-|frameshift_variant	TEK|p.P417Lfs*10|1|0.71|ENSG00000120156|chr9:27185547-27185547|C/-|frameshift_variant	TEK|p.P417Lfs*10|1|0.71|ENSG00000120156|chr9:27185547-27185547|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	606.3709106445312	2	605.868966	1209.72338	1.1323	0.00068603	2.2591	0.0013687	3.3914	0.0020547	605.8716224444073	53.684	0.67671	53.354	53.093	53.769	-0.32923					21	12	2	0	0	0	0.88752	1	20073	20073		1.6526	0.17072	1	2540100			11247	18263	6514	6555	10847	10847					0.12690546082126275
FTINHKLLPV	10	Unmodified	_FTINHKLLPV_					0	0	0		C3|p.V152I|1|0.47|ENSG00000125730|chr19:6718144-6718144|C/T|missense_variant	C3|p.V152I|1|0.47|ENSG00000125730|chr19:6718144-6718144|C/T|missense_variant	C3|p.V152I|1|0.47|ENSG00000125730|chr19:6718144-6718144|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	591.357421875	2	591.355691	1180.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.805	1	48.805	48.305	49.305	0								0	0	0	0.95351	1	18581	18581		3.9444	0.3479	1				11248	294	6515	6556	10848	10848					0.1137085719078641
FTKLYRWIL	9	Unmodified	_FTKLYRWIL_					0	0	0			REV__ENST00000205402.9_1_7:107556023-107556089:+|nuORF	REV__ENST00000205402.9_1_7:107556023-107556089:+|nuORF	MSMS	HCT116MG_D190212_S3	3	620.365478515625	2	620.366059	1238.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.682	1	57.408	56.908	57.908	-0.27434								0	0	0	0.7689	1	21926	21926		4.756	0	1		+		11249	14499	6516	6557	10849	10849					0.10775447570449614
FTKRKKTA	8	Unmodified	_FTKRKKTA_					0	0	0			REV__ENST00000521873.1_1_8:79578383-79590923:+|nuORF	REV__ENST00000521873.1_1_8:79578383-79590923:+|nuORF	MSMS	HCT116MG_D190212_S4	4	490.3049011230469	2	490.306001	978.597449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.699	1	61.444	60.944	61.944	-0.25457								0	0	0	0.8837	1	23283	23283		0.69038	0	1		+		11250	11213	6517	6558	10850	10850					0.10729459296692312
FTKWFQKRTNR	11	Unmodified	_FTKWFQKRTNR_					0	0	0			REV__ENST00000435033.1_1_19:12491157-12492084:-|nuORF	REV__ENST00000435033.1_1_19:12491157-12492084:-|nuORF	MSMS	HCT116MG_D190212_S3	3	756.4170532226562	2	756.415134	1510.81572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.744	1	57.469	56.969	57.969	-0.27434								0	0	0	0.95954	1	21951	21951		1.3295	0	1		+		11251	15613	6518	6559	10851	10851					0.08074024148345416
FTLALVNLFER	11	Unmodified	_FTLALVNLFER_					0	0	0			REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF	REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF	MSMS	HCT116MG_D190212_S4	4	661.8777465820312	2	661.876988	1321.73942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.833	1	54.513	54.013	55.013	-0.32004								0	0	0	0.9387	1	20514	20514		12.241	2.0901	1		+		11252	12735	6519	6560	10852	10852					0.09142207528338986
FTLLRLLVVAV	11	Unmodified	_FTLLRLLVVAV_					0	0	0		nc|ENSG00000007541|Q9BRB3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ	nc|ENSG00000007541|Q9BRB3|PIGQ	nc|ENSG00000007541|Q9BRB3|PIGQ	MSMS	HCT116MG_D190212_S3	3	622.4129638671875	2	622.410466	1242.80638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.805	1	54.509	54.009	55.009	-0.29587								0	0	0	0.95954	1	20775	20775		1.3295	0	1				11253	850	6520	6561	10853	10853					0.19468862810140308
FTLTNLLKVET	11	Unmodified	_FTLTNLLKVET_					0	0	0			REV__ENST00000497256.5_1_2:238969671-238976836:+|nuORF	REV__ENST00000497256.5_1_2:238969671-238976836:+|nuORF	MSMS	HCT116MG_D190212_S1	1	640.2770385742188	2	639.868828	1277.7231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.557	1	51.557	51.057	52.057	0								0	0	0	0.95273	1	19701	19701		4.897	1.6157	1		+		11254	16098	6521	6562	10854	10854					0.09535081571630144
FTMKKTKRWKG	11	Unmodified	_FTMKKTKRWKG_					0	0	0		ENST00000565782.1_1_16:18938215-18938455:+|nuORF	ENST00000565782.1_1_16:18938215-18938455:+|nuORF	ENST00000565782.1_1_16:18938215-18938455:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	705.9056396484375	2	705.905556	1409.79656	0.80828	0.00057057	0.65967	0.00046566	1.4679	0.0010362	705.9058364311526	52.54	1.3461	52.54	51.756	53.102	0					36	25	3	0	0	0	0.74191	1	20160	20160		1.3295	0.13619	1	16157000			11255	8858	6522	6563	10855	10855					0.10805351533076646
FTNWCYFYDKF	11	Unmodified	_FTNWCYFYDKF_					0	0	0			REV__ENSG00000111732|ENST00000229335|AICDA	REV__ENSG00000111732|ENST00000229335|AICDA	MSMS	HCT116MG_D190212_S4	4	767.6620483398438	2	767.329013	1532.64347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.178	1	52.844	52.344	53.344	-0.33473								0	0	0	0.95581	1	19847	19847		3.2813	0	1		+		11256	11437	6523	6564	10856	10856					-0.10154308374058019
FTNWYPCHL	9	Unmodified	_FTNWYPCHL_					0	0	0			REV__ENSG00000064932|ENST00000361757|SBNO2	REV__ENSG00000064932|ENST00000361757|SBNO2	MSMS	HCT116MG_D190212_S3	3	394.18023681640625	3	394.17966	1179.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.666	1	58.398	57.898	58.898	-0.26782								0	0	0	0.76948	1	22322	22322		2.7352	1.0826	1		+		11257	10691	6524	6565	10857	10857					-0.06542770088640282
FTQWLDRCDAH	11	Unmodified	_FTQWLDRCDAH_					0	0	0			REV__CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant	REV__CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	696.7433471679688	2	696.311686	1390.60882	0.66968	0.00046631	-0.98088	-0.000683	-0.3112	-0.00021669	696.3109447111957	29.867	0.20821	29.867	29.737	29.945	0					5	3	2	0	0	0	0.73177	1	10909	10909		10.074	0.6908	1	6632900	+		11258	10147	6525	6566	10858	10858					-0.07086131462119738
FTRFVRVGVP	10	Unmodified	_FTRFVRVGVP_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	589.8493041992188	2	589.345658	1176.67676	0.63837	0.00037622	-2.8773	-0.0016957	-2.239	-0.0013195	589.8459047357339	52.131	0.8818	51.785	51.623	52.504	-0.34538					19	16	2	0	0	0	0.85662	1	19426	19426		7.2892	0	1	3523100			11259	163	6526	6567	10859	10859					0.09549106250847217
FTRLHISKERI	11	Unmodified	_FTRLHISKERI_					0	0	0			REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	MSMS	HCT116MG_D190212_S2	2	700.4091186523438	2	700.41206	1398.80957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.602	1	27.26	26.76	27.76	-0.34201								0	0	0	0.94755	1	10033	10033		7.609	1.8771	1		+		11260	12777	6527	6568	10860	10860					0.12611505916834176
FTRVSERAR	9	Unmodified	_FTRVSERAR_					0	0	0		ENST00000374825.8_1_6:32939382-32940003:+|nuORF	ENST00000374825.8_1_6:32939382-32940003:+|nuORF	ENST00000374825.8_1_6:32939382-32940003:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	374.54486083984375	3	374.54399	1120.61014	-0.17337	-6.4935E-05	1.8281	0.0006847	1.6547	0.00061976	374.54483101804317	28.185	0.25938	27.855	27.77	28.029	-0.32987					7	4	3	0	0	0	0.64246	1	10298	10298		5.7834	1.3773	1	12203000			11261	7502	6528	6569	10861	10861					0.05465870688931318
FTSEDDLVKL	10	Unmodified	_FTSEDDLVKL_					0	0	0		AP3B1|p.E758Dfs*25|1|0.05|ENSG00000132842|chr5:78110330-78110331|-/GTTGTAATTGAAGGTAAATA|frameshift_variant;AP3B1|p.K923Nfs*4|5|0.24|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant;nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1	AP3B1|p.E758Dfs*25|1|0.05|ENSG00000132842|chr5:78110330-78110331|-/GTTGTAATTGAAGGTAAATA|frameshift_variant	AP3B1|p.E758Dfs*25|1|0.05|ENSG00000132842|chr5:78110330-78110331|-/GTTGTAATTGAAGGTAAATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	583.8005981445312	2	583.800611	1165.58667	0.68132	0.00039776	-0.53629	-0.00031309	0.14503	8.4668E-05	583.8001013782983	33.346	0.20715	33.346	33.244	33.452	0					5	3	2	0	0	0	0.77749	1	12368	12368		13.906	0	1	4023200			11262	151	6529	6570	10862	10862					0.010499673411004551
FTSLTSMPLS	10	Oxidation (M)	_FTSLTSM(Oxidation (M))PLS_		FTSLTSM(1)PLS		FTSLTSM(65)PLS	0	0	1		nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-MSMS	HCT116MG_D190212_S2	2	550.1851806640625	2	550.270632	1098.52671	-0.025554	-1.4062E-05	0.88218	0.00048544	0.85663	0.00047138	550.2710514461406	43.144	0.20581	43.071	42.943	43.149	-0.073376					5	3	2	0	0	0	0.1448	2	16344	16344;16379		65.235	12.967	1	22730000			11263	5098	6530	6571	10863;10864	10863		111			-0.018610465937854315
FTSRCCEVL	9	Unmodified	_FTSRCCEVL_					0	0	0		ENSG00000204480|ENST00000376101|PRAMEF19	ENSG00000204480|ENST00000376101|PRAMEF19	ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-SECPEP	HCT116MG_D190212_S2	2	353.8538513183594	3	353.165022	1056.47324	-0.083952	-2.9649E-05	-0.11166	-3.9436E-05	-0.19561	-6.9084E-05	353.16478969789773	27.683	0.15504	27.341	27.243	27.398	-0.34201					4	2	2	0	0	0	0.2615	1	10086	10086		2.086	1.0145	1	3258800			11264	6336	6531	6572	10865	10865					-0.05274122577293383
FTTLVALILC	10	Unmodified	_FTTLVALILC_					0	0	0			REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	REV__ENST00000519589.1_1_8:133153289-133492518:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	547.3192749023438	2	547.319928	1092.6253	0.36244	0.00019837	0.24339	0.00013321	0.60583	0.00033158	547.3200014146796	47.958	2.1316	47.958	47.309	49.44	0					67	41	3	0	0	0	0.82332	1	18165	18165		10.074	0	1	47125000	+		11265	13786	6532	6573	10866	10866					0.08269601441929808
FTTVVPKGP	9	Unmodified	_FTTVVPKGP_					0	0	0			REV__SIGLECL1|p.A181T|1|0.19|ENSG00000179213|chr19:51267503-51267503|G/A|missense_variant	REV__SIGLECL1|p.A181T|1|0.19|ENSG00000179213|chr19:51267503-51267503|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	473.27435302734375	2	473.273835	944.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.625	1	35.326	34.826	35.826	-0.29922								0	0	0	0.71969	1	13139	13139		18.135	3.5533	1		+		11266	17516	6533	6574	10867	10867					0.058632594199025334
FTVKVHLKNNK	11	Unmodified	_FTVKVHLKNNK_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MSMS	HCT116MG_D190212_S3	3	664.3967895507812	2	664.395879	1326.7772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.924	1	53.625	53.125	54.125	-0.29946								0	0	0	0.95731	1	20421	20421		2.4985	0	1				11267	3864	6534	6575	10868	10868					0.12688718513823005
FTVLLHLKNEL	11	Unmodified	_FTVLLHLKNEL_					0	0	0		ENST00000380393.7_1_20:2844875-2903853:+|nuORF;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16;VPS16|p.M592Hfs*18|1|0.16|ENSG00000215305|chr20:2864410-2864411|-/T|frameshift_variant	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	ENST00000380393.7_1_20:2844875-2903853:+|nuORF	MSMS	HCT116MG_D190212_S4	4	663.8956298828125	2	663.892638	1325.77072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.798	1	54.474	53.974	54.974	-0.32349								0	0	0	0.95196	1	20500	20500		5.2969	1.7004	1				11268	6449	6535	6576	10869	10869					0.12086780562481181
FTVMMRRKHRP	11	Unmodified	_FTVMMRRKHRP_					0	0	0		TRIM45|p.V497M|1|0.27|ENSG00000134253|chr1:117113464-117113464|C/T|missense_variant	TRIM45|p.V497M|1|0.27|ENSG00000134253|chr1:117113464-117113464|C/T|missense_variant	TRIM45|p.V497M|1|0.27|ENSG00000134253|chr1:117113464-117113464|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	729.9020385742188	2	729.900282	1457.78601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.359	1	48.043	47.543	48.543	-0.31596								0	0	0	0.95023	1	18186	18186		6.2058	0.47393	1				11269	18664	6536	6577	10870	10870					0.07543045607008025
FTWEGLYNV	9	Unmodified	_FTWEGLYNV_					0	0	0		USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant	USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1128.5374755859375	1	1128.53604	1127.52876	0.65889	0.00074358	0.18407	0.00020773	0.84296	0.00095131	1128.536250682415	57.204	0.20802	57.025	56.895	57.103	-0.17904					5	3	2	0	0	0	0.32162	1	22111	22111		28.487	15.955	1	13968000			11270	1831	6537	6578	10871	10871					-0.02990249793674593
FTWMYTPGR	9	Unmodified	_FTWMYTPGR_					0	0	0			REV__DNAH9|p.V4461M|1|0.28|ENSG00000007174|chr17:11969447-11969447|G/A|missense_variant	REV__DNAH9|p.V4461M|1|0.28|ENSG00000007174|chr17:11969447-11969447|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	387.26019287109375	3	386.851543	1157.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.873	1	20.663	20.163	21.163	-0.20959								0	0	0	0.76902	1	7172	7172		2.4985	0.75621	1		+		11271	10389	6538	6579	10872	10872					-0.039664835716166635
FTYLMPNLCC	10	Unmodified	_FTYLMPNLCC_					0	0	0			REV__nc|ENSG00000160683|P32302-2|CXCR5	REV__nc|ENSG00000160683|P32302-2|CXCR5	MSMS	HCT116MG_D190212_S4	4	402.1797180175781	3	402.178163	1203.51266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.543	1	63.304	62.804	63.804	-0.2389								0	0	0	0.96911	1	23958	23958		0.15932	0	1		+		11272	12837	6539	6580	10873	10873					-0.08095738618044379
FVCCLVRL	8	Unmodified	_FVCCLVRL_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000530567.1_1_11:64977449-64978754:+|nuORF;ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	HCT116MG_D190212_S1	1	476.7579345703125	2	476.758984	951.503414	0.20418	9.7346E-05	-2.0587	-0.00098149	-1.8545	-0.00088414	476.7578252991289	45.343	0.25911	45.343	45.192	45.451	0					9	4	3	0	0	0	0.83066	1	17192	17192		7.9102	2.1783	1	16148000			11273	920	6540	6581	10874	10874					0.025722808785531015
FVDDETKL	8	Unmodified	_FVDDETKL_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF;ENST00000587730.5_1_19:14520346-14520718:-|nuORF;ENST00000482195.5_1_6:31499071-31508296:-|nuORF;ENST00000481456.1_1_6:31500550-31500844:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-SECPEP	HCT116MG_D190212_S2	2	483.2502746582031	2	483.742565	965.470577	0.15042	7.2762E-05	-1.8487	-0.00089428	-1.6983	-0.00082152	483.74148114411764	34.117	0.36331	33.941	33.812	34.175	-0.17512					9	6	2	0	0	0	0.18428	1	12695	12695		56.177	10.156	1	8316700			11274	6241	6541	6582	10875	10875					-0.013539314389618085
FVDDGTETHF	10	Unmodified	_FVDDGTETHF_					0	0	0		nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	MSMS	HCT116MG_D190212_S2	2	584.2523803710938	2	584.251286	1166.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.188	1	36.06	35.56	36.56	-0.12799								0	0	0	0.16	1	13524	13524		71.922	45.654	1				11275	4361	6542	6583	10876	10876					-0.08856635903953247
FVDDGTETHF	10	Unmodified	_FVDDGTETHF_					0	0	0		nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	MULTI-MSMS	HCT116MG_D190212_S3	3	584.250732421875	2	584.251286	1166.48802	0.13317	7.7806E-05	0.44782	0.00026164	0.58099	0.00033944	584.251368330409	36.316	0.20774	36.016	35.886	36.093	-0.30042					5	3	2	0	0	0	0.69918	1	13426	13426		20.454	10.38	1	6177600			11276	4361	6542	6583	10877	10877					-0.08856635903953247
FVDDGTETHF	10	Unmodified	_FVDDGTETHF_					0	0	0		nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	MSMS	HCT116MG_D190212_S4	4	584.2520751953125	2	584.251286	1166.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.464	1	36.079	35.579	36.579	-0.38558								0	0	0	0.45592	1	13345	13345		49.933	28.396	1				11277	4361	6542	6583	10878	10878					-0.08856635903953247
FVDDGTETHF	10	Unmodified	_FVDDGTETHF_					0	0	0		nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	nc|ENSG00000158234|Q9NVQ4|FAIM	MULTI-MATCH	HCT116MG_D190212_S1	1		2	584.251286	1166.48802	0.64374	0.0003761	0.72975	0.00042636	1.3735	0.00080246	584.7534565986333	36.019	0.20826	36.019	35.942	36.15	0	0.0019032	0.0001811	NaN	20.454	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2544500			11278	4361	6542	6583							-0.08856635903953247
FVDDQQTFF	9	Unmodified	_FVDDQQTFF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S3	3	573.7591552734375	2	573.758746	1145.50294	0.40116	0.00023017	0.11844	6.7955E-05	0.5196	0.00029813	573.7589118089563	54.214	0.26128	53.916	53.77	54.031	-0.29838					7	4	2	0	0	0	0.35842	1	20557	20557		34.102	23.919	1	2937100			11279	4969	6543	6584	10879	10879					-0.06399144035935933
FVDDQQTFF	9	Unmodified	_FVDDQQTFF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	573.758746	1145.50294	0.30793	0.00017668	-0.10101	-5.7958E-05	0.20691	0.00011872	574.2601918831642	54.041	0.20567	53.852	53.739	53.945	-0.1894	-0.032194	-0.00018114	NaN	34.102	9	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10248000			11280	4969	6543	6584							-0.06399144035935933
FVDKNNDLLY	10	Unmodified	_FVDKNNDLLY_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	620.8135986328125	2	620.814053	1239.61355	0.60431	0.00037517	-0.28739	-0.00017841	0.31692	0.00019675	620.8140826708633	42.032	0.20883	42.032	41.914	42.123	0					5	3	2	0	0	0	0.060266	1	15858	15858		81.915	24.193	1	19381000			11281	3004	6544	6585	10880	10880					0.0033307595228961873
FVDKNNDLLY	10	Unmodified	_FVDKNNDLLY_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	620.8136596679688	2	620.814053	1239.61355	0.47462	0.00029465	0.035611	2.2108E-05	0.51023	0.00031676	620.8140774780571	42.041	0.51806	41.973	41.756	42.274	-0.068199					13	9	2	0	0	0	0.044769	1	15897	15897		91.085	18.117	1	110070000			11282	3004	6544	6585	10881	10881					0.0033307595228961873
FVDKNNDLLY	10	Unmodified	_FVDKNNDLLY_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	620.8143920898438	2	620.814053	1239.61355	0.48182	0.00029912	0.032709	2.0306E-05	0.51452	0.00031942	620.8140750178678	42.317	0.36482	42.013	41.832	42.196	-0.30352					14	6	3	0	0	0	0.060266	1	15766	15766		81.915	30.285	1	23107000			11283	3004	6544	6585	10882	10882					0.0033307595228961873
FVDKNNDLLY	10	Unmodified	_FVDKNNDLLY_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	620.8148193359375	2	620.814053	1239.61355	0.41593	0.00025822	-0.086301	-5.3577E-05	0.32963	0.00020464	620.8142133051842	42.396	0.31128	42.02	41.839	42.15	-0.37565					12	5	3	0	0	0	0.11897	1	15607	15607		70.332	32.156	1	5441800			11284	3004	6544	6585	10883	10883					0.0033307595228961873
FVDMGHSAY	9	Unmodified	_FVDMGHSAY_					0	0	0		HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;ENSG00000170606|ENST00000304858|HSPA4	HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	513.7216186523438	2	513.72111	1025.42767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.757	1	34.599	34.099	35.099	-0.15834								0	0	0	0.0047834	1	12942	12942		117.6	74.631	1				11285	5144	6545	6586	10884	10884					-0.08403024768017531
FVDPLVTNY	9	Unmodified	_FVDPLVTNY_					0	0	0		TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF	TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1067.5399169921875	1	1067.54079	1066.53351	0.44613	0.00047626	-0.23605	-0.00025199	0.21008	0.00022427	1067.5404303177702	53.851	0.25745	53.661	53.584	53.842	-0.1894					8	4	2	0	0	0	0.0094709	1	20749	20749		114.65	55.97	1	14324000			11286	1016	6546	6587	10885	10885					0.0029063434908493946
FVDPLVTNY	9	Unmodified	_FVDPLVTNY_					0	0	0		TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF	TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.7755126953125	2	534.274032	1066.53351	0.38352	0.00020491	0.13927	7.4411E-05	0.5228	0.00027932	534.2740510800503	53.93	0.30925	53.74	53.532	53.842	-0.1894					9	5	2	0	0	0	0.097615	1	20775	20775		58.679	26.373	1	15735000			11287	1016	6546	6587	10886	10886					0.0029063434908493946
FVDPYPVNKY	10	Unmodified	_FVDPYPVNKY_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	HCT116MG_D190212_S2	2	621.81640625	2	621.313689	1240.61282	0.54588	0.00033916	-0.14836	-9.2181E-05	0.39751	0.00024698	621.3133345507578	40.932	0.46527	40.863	40.571	41.036	-0.069626					21	8	3	0	0	0	0.40515	1	15484	15484		41.84	23.693	1	19128000			11288	5316	6547	6588	10887	10887					0.002142813032378399
FVEEITENYK	10	Unmodified	_FVEEITENYK_					0	0	0		BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant	BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	424.5438232421875	3	424.543321	1270.60813	0.15257	6.4772E-05	0.31241	0.00013263	0.46498	0.0001974	424.54344482915855	19.394	0.20805	19.207	19.077	19.285	-0.18674					6	3	2	0	0	0	0.74568	1	6588	6588		16.566	5.5006	1	2797500			11289	275	6548	6589	10888	10888					-0.016346476302032897
FVELGTQPATQ	11	Unmodified	_FVELGTQPATQ_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MSMS	HCT116MG_D190212_S4	4	595.806884765625	2	595.806228	1189.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.204	1	37.822	37.322	38.322	-0.38283								0	0	0	0.85129	1	13993	13993		26.268	14.773	1				11290	4390	6549	6590	10889	10889					0.010687894352258809
FVESYQIIC	9	Unmodified	_FVESYQIIC_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-SECPEP	HCT116MG_D190212_S1	1	550.7677612304688	2	551.267893	1100.52123	0.60994	0.00033624	0.90169	0.00049707	1.5116	0.00083331	551.7695427519644	35.137	0.20242	35.137	35.013	35.215	0					5	3	2	0	0	0	0.25723	1	13082	13082		4.3292	0	1	8744800			11291	2547	6550	6591	10890	10890					-0.02500725385584701
FVETESVRY	9	Unmodified	_FVETESVRY_					0	0	0		ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	ENSG00000095139|ENST00000264028|ARCN1	MSMS	HCT116MG_D190212_S1	1	565.2802124023438	2	565.279846	1128.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.83	1	33.83	33.33	34.33	0								0	0	0	0.063593	1	12533	12533		66.457	39.573	1				11292	1604	6551	6592	10891	10891					-0.013991686275403481
FVGHNPPILIT	11	Unmodified	_FVGHNPPILIT_					0	0	0			REV__ENST00000471799.1_1_22:26886916-26887635:+|nuORF	REV__ENST00000471799.1_1_22:26886916-26887635:+|nuORF	MSMS	HCT116MG_D190212_S1	1	403.2326354980469	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.4964	1	3.4964	2.9964	3.9964	0								0	0	0	0.9619	1	1046	1046		0.094841	0	1		+		11293	15874	6552	6593	10892	10892					0.08102266811124537
FVGRARGP	8	Unmodified	_FVGRARGP_					0	0	0		ENST00000379026.6_1_19:36133589-36134644:+|nuORF	ENST00000379026.6_1_19:36133589-36134644:+|nuORF	ENST00000379026.6_1_19:36133589-36134644:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	430.2393798828125	2	430.248486	858.48242	0.10824	4.6568E-05	-0.1753	-7.5424E-05	-0.067069	-2.8856E-05	430.2484416276404	35.645	0.20582	35.502	35.386	35.592	-0.14245					5	3	2	0	0	0	0.30262	1	13307	13307		19.439	10.846	1	8717900			11294	7549	6553	6594	10893	10893					0.04751774885562554
FVGVWYTK	8	Unmodified	_FVGVWYTK_					0	0	0		ENST00000323460.9_1_3:196659561-196659759:+|nuORF	ENST00000323460.9_1_3:196659561-196659759:+|nuORF	ENST00000323460.9_1_3:196659561-196659759:+|nuORF	MSMS	HCT116MG_D190212_S4	4	500.2698669433594	2	500.268553	998.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.371	1	37.989	37.489	38.489	-0.38262								0	0	0	0.8837	1	14060	14060		12.532	6.1774	1				11295	7118	6554	6595	10894	10894					0.02323276765469018
FVIHIYALVF	10	Unmodified	_FVIHIYALVF_					0	0	0			REV__nc|ENSG00000182087|Q4ZIN3-2|TMEM259	REV__nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-MSMS	HCT116MG_D190212_S1	1	611.3557739257812	2	611.35516	1220.69577	0.32414	0.00019817	2.102	0.0012851	2.4261	0.0014832	611.356008814194	48.448	0.46249	48.448	48.306	48.768	0					13	8	2	0	0	0	0.88673	1	18461	18461		1.8442	0.36234	1	11638000	+		11296	13702	6555	6596	10895	10895					0.09424642821863927
FVKQQKARKK	10	Unmodified	_FVKQQKARKK_					0	0	0			REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF	REV__ENST00000573177.1_1_18:3603371-3603533:+|nuORF	MSMS	HCT116MG_D190212_S1	1	630.8980102539062	2	630.898589	1259.78262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.724	1	61.724	61.224	62.224	0								0	0	0	0.96453	1	23821	23821		1.4819	0.15237	1		+		11297	16584	6556	6597	10896	10896					0.1631244209631859
FVKSRAKRV	9	Unmodified	_FVKSRAKRV_					0	0	0			REV__ENSG00000089116|ENST00000261731|LHX5	REV__ENSG00000089116|ENST00000261731|LHX5	MSMS	HCT116MG_D190212_S4	4	364.2329406738281	3	364.232975	1089.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.992	1	36.608	36.108	37.108	-0.38486								0	0	0	0.7694	1	13559	13559		2.9952	0.90923	1		+		11298	10968	6557	6598	10897	10897					0.13584525970691175
FVLKKIKKKKK	11	Unmodified	_FVLKKIKKKKK_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000081019|ENST00000261441|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MSMS	HCT116MG_D190212_S3	3	694.4944458007812	2	694.497407	1386.98026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.044	1	39.743	39.243	40.243	-0.30137								0	0	0	0.96208	1	14853	14853		0	0	1				11299	1407	6558	6599	10898	10898					0.3022506830623115
FVLLLFGI	8	Unmodified	_FVLLLFGI_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF;YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MSMS	HCT116MG_D190212_S1	1	461.2939453125	2	461.29404	920.573526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.065	1	43.065	42.565	43.565	0								0	0	0	0.8837	1	16260	16260		2.8892	0	1				11300	3431	6559	6600	10899	10899					0.11006225810342585
FVLRPRMTL	9	Unmodified	_FVLRPRMTL_					0	0	0			REV__ENST00000372583.5_1_1:42094587-42166618:-|nuORF	REV__ENST00000372583.5_1_1:42094587-42166618:-|nuORF	MSMS	HCT116MG_D190212_S4	4	378.2386779785156	3	378.226833	1131.65867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.747	1	59.475	58.975	59.975	-0.27156								0	0	0	0.7689	1	22492	22492		2.7352	0.23671	1		+		11301	15175	6560	6601	10900	10900					0.09810648004486211
FVLVVFILKY	10	Unmodified	_FVLVVFILKY_					0	0	0			REV__ENST00000306376.9_1_3:185765504-185765672:-|nuORF	REV__ENST00000306376.9_1_3:185765504-185765672:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	620.8272094726562	2	620.888835	1239.76312	0.51421	0.00031927	-0.53785	-0.00033394	-0.023642	-1.4679E-05	621.3913872237373	57.806	0.67373	57.806	57.36	58.034	0					15	12	2	0	0	0	0.31093	1	22203	22203		0	0	1	14664000	+		11302	14811	6561	6602	10901	10901					0.15282673032834282
FVMLKKKRNK	10	Unmodified	_FVMLKKKRNK_					0	0	0			REV__ENST00000476149.1_1_2:118582113-118584081:+|nuORF	REV__ENST00000476149.1_1_2:118582113-118584081:+|nuORF	MSMS	HCT116MG_D190212_S3	3	646.408203125	2	646.405192	1290.79583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.503	1	60.251	59.751	60.751	-0.25233								0	0	0	0.96911	1	23069	23069		0.45834	0	1		+		11303	10953	6562	6603	10902	10902					0.1620655688404895
FVMQWLDEN	9	Unmodified	_FVMQWLDEN_					0	0	0		UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant;UNC13C|p.P2056Qfs*10|1|0.33|ENSG00000137766|chr15:54622384-54622384|C/-|frameshift_variant;ENSG00000137766|ENST00000260323|UNC13C	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	394.5145568847656	3	394.514708	1180.5223	0.076974	3.0367E-05	-0.24641	-9.7213E-05	-0.16944	-6.6846E-05	394.8489617496328	16.988	0.36399	16.639	16.457	16.821	-0.34933					11	6	3	0	0	0	0.61923	1	5779	5779		6.6304	0	1	15969000			11304	3497	6563	6604	10903	10903					-0.060745110166863014
FVNREEIL	8	Unmodified	_FVNREEIL_					0	0	0			REV__ENST00000574478.1_1_17:18651366-18682393:+|nuORF	REV__ENST00000574478.1_1_17:18651366-18682393:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.27960205078125	2	510.279649	1018.54475	0.26595	0.00013571	-0.058838	-3.0024E-05	0.20712	0.00010569	510.279497975211	52.957	0.25726	52.768	52.604	52.861	-0.18922					7	4	2	0	0	0	0.55794	1	20371	20371		36.044	3.7387	1	15080000	+		11305	13367	6564	6605	10904	10904					0.03621456443238458
FVPILPIKK	9	Unmodified	_FVPILPIKK_					0	0	0			REV__ENSG00000180919|ENST00000316529|OR56B4	REV__ENSG00000180919|ENST00000316529|OR56B4	MSMS	HCT116MG_D190212_S3	3	352.2381286621094	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7151	1	8.7357	8.2357	9.2357	0.020599								0	0	0	0.77018	1	2630	2630		0.26902	0.26902	1		+		11306	13675	6565	6606	10905	10905					0.1703384817285496
FVPPNDNIH	9	Unmodified	_FVPPNDNIH_					0	0	0			REV__PCDHA1|p.D125H|1|0.22|ENSG00000204970|chr5:140786663-140786663|G/C|missense_variant	REV__PCDHA1|p.D125H|1|0.22|ENSG00000204970|chr5:140786663-140786663|G/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	526.75927734375	2	526.761623	1051.50869	0.58737	0.00030941	-1.8351	-0.00096667	-1.2477	-0.00065726	527.2622777588923	24.356	0.46832	23.976	23.666	24.135	-0.38003					20	8	4	0	0	0	0.39784	1	8775	8775		22.736	5.794	1	10336000	+		11307	17386	6566	6607	10906	10906					-0.015000007336311683
FVPRSAIR	8	Unmodified	_FVPRSAIR_					0	0	0			REV__ENST00000506318.1_1_5:140071164-140071422:+|nuORF	REV__ENST00000506318.1_1_5:140071164-140071422:+|nuORF	MSMS	HCT116MG_D190212_S1	1	473.2832336425781	2	473.285069	944.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.766	1	46.766	46.266	47.266	0								0	0	0	0.8837	1	17752	17752		14.838	5.4551	1		+		11308	16148	6567	6608	10907	10907					0.08108903608172113
FVQFVVLLP	9	Unmodified	_FVQFVVLLP_					0	0	0			REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF	REV__ENST00000494448.5_1_11:62379597-62379678:-|nuORF	MSMS	HCT116MG_D190212_S4	4	531.3250732421875	2	531.323328	1060.6321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.206	1	53.88	53.38	54.38	-0.32605								0	0	0	0.7689	1	20261	20261		4.756	0	1		+		11309	16077	6568	6609	10908	10908					0.10421282384822916
FVQQRRQWQEE	11	Unmodified	_FVQQRRQWQEE_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	HCT116MG_D190212_S2	2	767.3834228515625	2	767.381488	1532.74842	0.86609	0.00066462	1.6098	0.0012353	2.4759	0.0019	767.3825349851526	50.199	0.2554	50.027	49.883	50.138	-0.1719					9	4	3	0	0	0	0.7332	1	19255	19255		9.544	0.79857	1	38288000	+		11310	10882	6569	6610	10909	10909					0.0033594914677905763
FVQSEAQQERC	11	Unmodified	_FVQSEAQQERC_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MSMS	HCT116MG_D190212_S2	2	662.7987670898438	2	662.801151	1323.58775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.884	1	33.701	33.201	34.201	-0.18378								0	0	0	0.89672	1	12588	12588		20.415	1.0526	1				11311	1628	6570	6611	10910	10910					-0.061101415616349186
FVQVIGLTAST	11	Unmodified	_FVQVIGLTAST_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	HCT116MG_D190212_S2	2	379.21710205078125	3	379.216768	1134.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.763	1	58.597	58.097	59.097	-0.1653								0	0	0	0.95976	1	22718	22718		1.2148	0	1		+		11312	11511	6571	6612	10911	10911					0.06654567820260127
FVRWWQWHRLK	11	Unmodified	_FVRWWQWHRLK_					0	0	0			REV__nc|ENSG00000133026|P35580|MYH10	REV__nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	HCT116MG_D190212_S1	1	548.3038330078125	3	547.968633	1640.88407	0.74346	0.00040739	-0.018214	-9.9808E-06	0.72524	0.00039741	548.3030452744607	17.489	0.31296	17.489	17.359	17.672	0					8	5	2	0	0	0	0.74191	1	5994	5994		0.08335	0.08335	1	3591100	+		11313	12014	6572	6613	10912	10912					0.0892631351887303
FVSYGGHA	8	Unmodified	_FVSYGGHA_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	419.197998046875	2	419.198128	836.381703	0.11938	5.0045E-05	0.13142	5.5091E-05	0.2508	0.00010514	419.1980465327061	24.438	0.36569	24.438	24.307	24.673	0					14	6	3	0	0	0	0.55314	1	8749	8749		36.466	4.3492	1	55330000	+		11314	11416	6573	6614	10913	10913					-0.04303301887944144
FVSYGGHA	8	Unmodified	_FVSYGGHA_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	419.198128	836.381703	0.11938	5.0045E-05	0.13142	5.5091E-05	0.2508	0.00010514	419.1980465327061	24.438	0.36569	24.438	24.307	24.673	0	0	0	NaN	36.466	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55330000	+		11315	11416	6573	6614							-0.04303301887944144
FVSYLTYPIY	10	Unmodified	_FVSYLTYPIY_					0	0	0			REV__ENSG00000109758|ENST00000382774|HGFAC	REV__ENSG00000109758|ENST00000382774|HGFAC	MULTI-MSMS	HCT116MG_D190212_S2	2	422.5227355957031	3	422.553269	1264.63798	0.27467	0.00011606	1.4925	0.00063065	1.7672	0.00074672	422.55416756908284	24.003	0.2596	23.62	23.456	23.715	-0.38324					6	4	2	0	0	0	0.85662	1	8537	8537		3.8763	0	1	2370300	+	+	11316	11380	6574	6615	10914	10914					0.016243361058059236
FVVHMKQKGKK	11	Unmodified	_FVVHMKQKGKK_					0	0	0		ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MSMS	HCT116MG_D190212_S1	1	443.9324035644531	3	443.932309	1328.7751	0.17523	7.7791E-05	0.016552	7.3479E-06	0.19178	8.5139E-05	444.2664147776723	17.02	0.15652	17.02	16.942	17.098	0					6	2	3	0	0	0	0.49618	1	5788	5788		46.475	31.637	1	10366000			11317	6171	6575	6616	10915	10915					0.12385966504371027
FVYDEPGHAV	10	Unmodified	_FVYDEPGHAV_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MSMS	HCT116MG_D190212_S1	1	567.2672729492188	2	567.266739	1132.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.083	1	35.083	34.583	35.583	0								0	0	0	0.33277	1	13039	13039		57.471	37.018	1				11318	3534	6576	6617	10916	10916					-0.042034377990376015
FVYDEPGHAV	10	Unmodified	_FVYDEPGHAV_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	HCT116MG_D190212_S2	2	567.2665405273438	2	567.266739	1132.51892	0.46301	0.00026265	0.14122	8.0109E-05	0.60423	0.00034276	567.2665466750684	35.061	0.31079	34.903	34.761	35.072	-0.15834					14	5	3	0	0	0	0.080188	1	13089	13089		77.984	45.679	1	25841000			11319	3534	6576	6617	10917	10917					-0.042034377990376015
FVYDEPGHAV	10	Unmodified	_FVYDEPGHAV_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MSMS	HCT116MG_D190212_S3	3	567.2669067382812	2	567.266739	1132.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.37	1	35.071	34.571	35.571	-0.29922								0	0	0	0.33277	1	13053	13053		57.471	37.018	1				11320	3534	6576	6617	10918	10918					-0.042034377990376015
FVYDEPGHAV	10	Unmodified	_FVYDEPGHAV_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF;MYOF|p.G944Afs*24|1|0.38|ENSG00000138119|chr10:93363998-93363998|C/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	567.266739	1132.51892	0.69012	0.00039148	-0.0018454	-1.0469E-06	0.68827	0.00039043	567.2665531935667	35.334	0.2079	35.035	34.853	35.061	-0.29922	0.066075	-7.7166E-05	NaN	77.984	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5444200			11321	3534	6576	6617							-0.042034377990376015
FWADTATSV	9	Unmodified	_FWADTATSV_					0	0	0		HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;ENST00000528902.1_1_17:72960370-72968856:-|nuORF;HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	HID1|p.P773Lfs*8|1|0.17|ENSG00000167861|chr17:74951619-74951619|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	499.23309326171875	2	499.234907	996.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.637	1	25.509	25.009	26.009	-0.12795								0	0	0	0.15181	1	9162	9162		50.855	18.55	1				11322	4959	6577	6618	10919	10919					-0.04310798236133451
FWAWLEREEFL	11	Unmodified	_FWAWLEREEFL_					0	0	0		ENSG00000167895|ENST00000318430|TMC8;TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant;nc|ENSG00000167895|Q8IU68-2|TMC8	ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.7628173828125	3	509.253993	1524.74015	0.34866	0.00017756	1.1979	0.00061004	1.5466	0.0007876	509.2547479299729	26.996	0.20783	26.996	26.865	27.073	0					9	3	3	0	0	0	0.36536	1	9741	9741		5.8681	0	1	9353700			11323	4961	6578	6619	10920	10920					-0.0012299782258651248
FWGVPASSSL	10	Unmodified	_FWGVPASSSL_					0	0	0		ENST00000439943.5_1_20:42839629-42843553:+|nuORF	ENST00000439943.5_1_20:42839629-42843553:+|nuORF	ENST00000439943.5_1_20:42839629-42843553:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	525.766845703125	2	525.766374	1049.5182	0.58579	0.00030799	-0.53141	-0.0002794	0.054373	2.8588E-05	525.766095387434	34.376	0.25923	34.201	34.072	34.331	-0.17512					6	4	2	0	0	0	0.17848	1	12822	12822		61.357	15.618	1	11219000			11324	7912	6579	6620	10921	10921					-0.004582324480907118
FWLCWMVVEE	10	Unmodified	_FWLCWMVVEE_					0	0	0			REV__ENSG00000159461|ENST00000290649|AMFR	REV__ENSG00000159461|ENST00000290649|AMFR	MSMS	HCT116MG_D190212_S1	1	671.3035888671875	2	671.303952	1340.59335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.214	1	64.214	63.714	64.714	0								0	0	0	0.96911	1	24779	24779		0.45834	0	1		+		11325	12806	6580	6621	10922	10922					-0.06332134303511339
FWLKDTLENTI	11	Unmodified	_FWLKDTLENTI_					0	0	0		ENST00000563447.1_1_16:2293017-2294430:-|nuORF;ENSG00000167969|ENST00000301729|ECI1	ENST00000563447.1_1_16:2293017-2294430:-|nuORF	ENST00000563447.1_1_16:2293017-2294430:-|nuORF	MSMS	HCT116MG_D190212_S1	1	690.3670654296875	2	690.36391	1378.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.655	1	19.655	19.155	20.155	0								0	0	0	0.94269	1	6828	6828		10.151	2.5416	1				11326	4965	6581	6622	10923	10923					0.039058935662524163
FWLYLELT	8	Unmodified	_FWLYLELT_					0	0	0		KIDINS220|p.T654Hfs*34|1|0.2|ENSG00000134313|chr2:8786010-8786010|T/-|frameshift_variant	KIDINS220|p.T654Hfs*34|1|0.2|ENSG00000134313|chr2:8786010-8786010|T/-|frameshift_variant	KIDINS220|p.T654Hfs*34|1|0.2|ENSG00000134313|chr2:8786010-8786010|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	362.1595153808594	3	362.195304	1083.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.144	1	56.844	56.344	57.344	-0.3004								0	0	0	0.8837	1	21441	21441		3.5965	1.098	1				11327	9262	6582	6623	10924	10924					0.0256441273411383
FWRSKGTETTL	11	Unmodified	_FWRSKGTETTL_					0	0	0		nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	MULTI-MSMS	HCT116MG_D190212_S4	4	663.3468627929688	2	663.346052	1324.67755	0.48414	0.00032115	0.45236	0.00030007	0.9365	0.00062122	663.3462711778027	38.519	0.62656	38.138	37.813	38.44	-0.38163					22	12	3	0	0	0	0.72218	1	14051	14051		13.615	2.1202	1	3603700			11328	9384	6583	6624	10925	10925					0.028198561092494856
FWTWINHLVTW	11	Unmodified	_FWTWINHLVTW_					0	0	0		ENST00000466758.5_1_3:182602545-182631653:+|nuORF;ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ENSG00000058063|ENST00000323116|ATP11B	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	752.1690063476562	2	751.882604	1501.75066	0.84155	0.00063275	0.17937	0.00013486	1.0209	0.00076761	751.8827258167413	45.425	0.73084	45.425	45.244	45.975	0					38	13	5	0	0	0	0.36495	1	17198	17198		2.9952	2.9952	1	371410000			11329	1096	6584	6625	10926	10926					0.019850296224831254
FWTWINHLVTW	11	Unmodified	_FWTWINHLVTW_					0	0	0		ENST00000466758.5_1_3:182602545-182631653:+|nuORF;ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ENSG00000058063|ENST00000323116|ATP11B	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	751.882604	1501.75066	0.95191	0.00071573	-0.27712	-0.00020836	0.67479	0.00050737	751.8821731759801	45.529	0.87307	45.436	45.256	46.129	-0.092472	0.020676	-0.0006975	NaN	2.9952	36	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144940000			11330	1096	6584	6625							0.019850296224831254
FWTWINHLVTW	11	Unmodified	_FWTWINHLVTW_					0	0	0		ENST00000466758.5_1_3:182602545-182631653:+|nuORF;ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ENSG00000058063|ENST00000323116|ATP11B	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENST00000466758.5_1_3:182602545-182631653:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	751.882604	1501.75066	0.63895	0.00048042	0.23457	0.00017637	0.87353	0.00065679	751.8826713998355	45.697	1.7093	45.386	45.2	46.91	-0.31094	-0.029776	7.197E-05	NaN	2.9952	70	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117250000			11331	1096	6584	6625							0.019850296224831254
FWWWQDNWLWH	11	Unmodified	_FWWWQDNWLWH_					0	0	0		ENST00000431490.1_1_3:45201441-45201549:-|nuORF	ENST00000431490.1_1_3:45201441-45201549:-|nuORF	ENST00000431490.1_1_3:45201441-45201549:-|nuORF	MSMS	HCT116MG_D190212_S1	1	852.3828735351562	2	852.38076	1702.74697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.473	1	30.473	29.973	30.973	0								0	0	0	0.96208	1	11178	11178		0	0	1				11332	7856	6585	6626	10927	10927					-0.07629640151344574
FWWWQDNWLWH	11	Unmodified	_FWWWQDNWLWH_					0	0	0		ENST00000431490.1_1_3:45201441-45201549:-|nuORF	ENST00000431490.1_1_3:45201441-45201549:-|nuORF	ENST00000431490.1_1_3:45201441-45201549:-|nuORF	MSMS	HCT116MG_D190212_S3	3	852.3775634765625	2	852.38076	1702.74697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.306	1	27.137	26.637	27.637	-0.16933								0	0	0	0.96141	1	9835	9835		0.35063	0.35063	1				11333	7856	6585	6626	10928	10928					-0.07629640151344574
FYALEENHVGF	11	Unmodified	_FYALEENHVGF_					0	0	0		ENSG00000271425|ENST00000583866|NBPF10	ENSG00000271425|ENST00000583866|NBPF10	ENSG00000271425|ENST00000583866|NBPF10	MSMS	HCT116MG_D190212_S3	3	663.3126220703125	2	663.311677	1324.6088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.342	1	36.042	35.542	36.542	-0.30042								0	0	0	0.94284	1	13425	13425		10.074	0.52995	1				11334	6663	6586	6627	10929	10929					-0.040518081905020153
FYAPELLFFAK	11	Unmodified	_FYAPELLFFAK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	673.36279296875	2	673.363182	1344.71181	1.0775	0.00072553	-0.70024	-0.00047151	0.37724	0.00025402	673.362677017188	58.026	1.2005	57.751	56.63	57.83	-0.27434					36	22	2	0	0	0	0.55234	1	21832	21832		40.725	33.116	1	4969000		+	11335	554	6587	6628	10930	10930					0.05324304268128799
FYAPELLFFAK	11	Unmodified	_FYAPELLFFAK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S3	3	673.3632202148438	2	673.363182	1344.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.107	1	57.838	57.338	58.338	-0.26932								0	0	0	0.93882	1	22097	22097		12.175	0.68004	1			+	11336	554	6587	6628	10931	10931					0.05324304268128799
FYAPELLFFAK	11	Unmodified	_FYAPELLFFAK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	673.3634643554688	2	673.363182	1344.71181	0.87222	0.00058732	-0.063219	-4.2569E-05	0.809	0.00054475	673.3631895447244	58.043	0.88504	57.754	56.895	57.78	-0.28879					28	16	2	0	0	0	0.39766	1	21582	21582		55.235	43.74	1	2092000		+	11337	554	6587	6628	10932	10932					0.05324304268128799
FYATLGTMSVT	11	Unmodified	_FYATLGTMSVT_					0	0	0			REV__ENST00000435270.2_1_1:146791151-146791412:+|nuORF	REV__ENST00000435270.2_1_1:146791151-146791412:+|nuORF	MSMS	HCT116MG_D190212_S1	1	595.793701171875	2	595.791732	1189.56891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.371	1	18.371	17.871	18.871	0								0	0	0	0.93717	1	6311	6311		13.042	2.243	1		+		11338	15616	6588	6629	10933	10933					-0.01829071185397879
FYDQRRMQY	9	Unmodified	_FYDQRRMQY_					0	0	0			REV__ENST00000345662.5_1_2:32362241-32368456:+|nuORF	REV__ENST00000345662.5_1_2:32362241-32368456:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	654.306396484375	2	653.803497	1305.59244	0.64601	0.00042236	1.994	0.0013037	2.64	0.001726	654.3064680910651	21.963	0.52133	21.964	21.677	22.198	0.00074577					12	9	2	0	0	0	0.51829	1	7708	7708		15.847	2.2323	1	2810800	+		11339	15012	6589	6630	10934	10934					-0.0481321262820984
FYDQRRMQY	9	Unmodified	_FYDQRRMQY_					0	0	0			REV__ENST00000345662.5_1_2:32362241-32368456:+|nuORF	REV__ENST00000345662.5_1_2:32362241-32368456:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	653.803497	1305.59244	0.64601	0.00042236	1.994	0.0013037	2.64	0.001726	654.3064680910651	21.963	0.52133	21.964	21.677	22.198	0.00074577	0.014893	-0.00080993	NaN	15.847	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2810800	+		11340	15012	6589	6630							-0.0481321262820984
FYDQRRMQY	9	Unmodified	_FYDQRRMQY_					0	0	0			REV__ENST00000345662.5_1_2:32362241-32368456:+|nuORF	REV__ENST00000345662.5_1_2:32362241-32368456:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	653.803497	1305.59244	0.59327	0.00038788	3.0237	0.0019769	3.617	0.0023648	654.3075043593276	22.162	0.67479	21.934	21.313	21.988	-0.22777	-0.014893	0.00053654	NaN	15.847	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2293700	+		11341	15012	6589	6630							-0.0481321262820984
FYETGAFPP	9	Unmodified	_FYETGAFPP_					0	0	0		ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	MSMS	HCT116MG_D190212_S4	4	514.7383422851562	2	514.739825	1027.4651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.86	1	52.519	52.019	53.019	-0.34023								0	0	0	0.74436	1	19718	19718		16.942	2.104	1				11342	2815	6590	6631	10935	10935					-0.0475361023077312
FYFLCFWFRCP	11	Unmodified	_FYFLCFWFRCP_					0	0	0			REV__ENST00000567806.1_1_16:27471942-27472230:-|nuORF	REV__ENST00000567806.1_1_16:27471942-27472230:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	510.23492431640625	3	510.235	1527.68317	0.26893	0.00013722	-1.4864	-0.00075841	-1.2175	-0.00062119	510.2343362002902	19.053	0.26049	19.053	18.923	19.183	0					9	4	3	0	0	0	0.74191	1	6608	6608		0.50596	0.13928	1	4293400	+		11343	16554	6591	6632	10936	10936					-0.05956459904314215
FYFRIRFYLML	11	Unmodified	_FYFRIRFYLML_					0	0	0			REV__ENSG00000105397|ENST00000525621|TYK2	REV__ENSG00000105397|ENST00000525621|TYK2	MSMS	HCT116MG_D190212_S1	1	784.9276733398438	2	784.925958	1567.83736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.756	1	27.756	27.256	28.256	0								0	0	0	0.95954	1	10085	10085		1.3295	0.13619	1		+		11344	11252	6592	6633	10937	10937					0.07615692852732536
FYHFVTCRRRP	11	Unmodified	_FYHFVTCRRRP_					0	0	0		ENST00000409871.5_1_2:113033381-113033582:+|nuORF	ENST00000409871.5_1_2:113033381-113033582:+|nuORF	ENST00000409871.5_1_2:113033381-113033582:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	495.2452392578125	3	494.590945	1480.75101	0.24164	0.00011951	0.96725	0.00047839	1.2089	0.00059791	494.59108526799673	21.487	0.20808	21.104	20.961	21.169	-0.38341					8	3	3	0	0	0	0.74191	1	7532	7532		2.6312	0.19645	1	14319000			11345	7732	6593	6634	10938	10938					0.029861260707093606
FYIIDSAEEP	10	Unmodified	_FYIIDSAEEP_					0	0	0			REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	592.2792358398438	2	592.279512	1182.54447	0.81259	0.00048128	-0.17716	-0.00010493	0.63543	0.00037635	592.2791215730234	44.583	0.52248	44.498	44.22	44.743	-0.084797					25	9	4	0	0	0	0.32398	1	16919	16919		48.346	10.372	1	45462000	+		11346	11509	6594	6635	10939	10939					-0.039500080672723925
FYIIDSAEEP	10	Unmodified	_FYIIDSAEEP_					0	0	0			REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	592.2794189453125	2	592.279512	1182.54447	0.82456	0.00048837	-0.10063	-5.9598E-05	0.72394	0.00042877	592.2792921222475	44.83	0.4678	44.521	44.265	44.732	-0.30927					27	12	3	0	0	0	0.32398	2	16721	16721;16793		48.346	10.372	1	18706000	+		11347	11509	6594	6635	10940;10941	10940					-0.039500080672723925
FYIIDSAEEP	10	Unmodified	_FYIIDSAEEP_					0	0	0			REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	592.2807006835938	2	592.279512	1182.54447	0.82033	0.00048586	0.028248	1.6731E-05	0.84857	0.00050259	592.2796081105423	44.858	0.37373	44.485	44.361	44.735	-0.37326					37	18	3	0	0	0	0.54141	1	16504	16504		32.305	6.9062	1	11552000	+		11348	11509	6594	6635	10942	10942					-0.039500080672723925
FYIIDSAEEP	10	Unmodified	_FYIIDSAEEP_					0	0	0			REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	592.279512	1182.54447	0.81259	0.00048128	-0.17716	-0.00010493	0.63543	0.00037635	592.2791215730234	44.583	0.52248	44.498	44.22	44.743	-0.084797	-0.0030809	-0.00012878	NaN	48.346	25	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45462000	+		11349	11509	6594	6635							-0.039500080672723925
FYIIDSAEEP	10	Unmodified	_FYIIDSAEEP_					0	0	0			REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	REV__MORC1|p.S130Lfs*14|3|0.2|ENSG00000114487|chr3:109099393-109099393|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	592.279512	1182.54447	0.82033	0.00048586	0.028248	1.6731E-05	0.84857	0.00050259	592.2796081105423	44.858	0.37373	44.485	44.361	44.735	-0.37326	-0.016402	0.00011454	NaN	48.346	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11552000	+		11350	11509	6594	6635							-0.039500080672723925
FYKGVAPLWMR	11	Unmodified	_FYKGVAPLWMR_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MSMS	HCT116MG_D190212_S4	4	684.3678588867188	2	684.368275	1366.722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.806	1	24.538	24.038	25.038	-0.26881								0	0	0	0.8787	1	8759	8759		22.736	13.353	1				11351	1316	6595	6636	10943	10943					0.05330588721699314
FYLNAARHFQE	11	Unmodified	_FYLNAARHFQE_					0	0	0			REV__ATP10D|p.M414Wfs*10|1|0.3|ENSG00000145246|chr4:47536777-47536777|A/-|frameshift_variant	REV__ATP10D|p.M414Wfs*10|1|0.3|ENSG00000145246|chr4:47536777-47536777|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	698.3460083007812	2	698.343843	1394.67313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.55	1	17.631	17.131	18.131	0.081358								0	0	0	0.93717	1	5903	5903		13.042	1.5478	1		+		11352	10007	6596	6637	10944	10944					-0.008416083136808084
FYMAMHLRHD	10	Unmodified	_FYMAMHLRHD_					0	0	0			REV__OR14K1|p.S207Hfs*3|1|0.27|ENSG00000153230|chr1:247739230-247739230|T/-|frameshift_variant	REV__OR14K1|p.S207Hfs*3|1|0.27|ENSG00000153230|chr1:247739230-247739230|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	440.8707275390625	3	440.87072	1319.59033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.86	1	10.86	10.36	11.36	0								0	0	0	0.97045	1	3367	3367		0.15932	0	1		+		11353	12647	6597	6638	10945	10945					-0.056679646377006065
FYNNNTYF	8	Unmodified	_FYNNNTYF_					0	0	0		tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	542.0674438476562	2	541.732532	1081.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.922	1	11.977	11.477	12.477	0.055045								0	0	0	0.8837	1	3684	3684		0.69038	0	1				11354	18485	6598	6639	10946	10946					-0.08695682378925085
FYPSYGMPYSP	11	Unmodified	_FYPSYGMPYSP_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	HCT116MG_D190212_S2	2	436.858154296875	3	436.858363	1307.55326	0.02478	1.0826E-05	-0.67926	-0.00029674	-0.65448	-0.00028591	436.8580038789333	21.135	0.2081	20.752	20.651	20.859	-0.38288					7	3	3	0	0	0	0.73111	1	7449	7449		10.315	1.0715	1	9343100			11355	2519	6599	6640	10947	10947					-0.08821357702436217
FYQRFRHFQYH	11	Unmodified	_FYQRFRHFQYH_					0	0	0		ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant;ZKSCAN5|p.R547Tfs*4|1|0.06|ENSG00000196652|chr7:99531366-99531367|-/AACATTTCTTT|frameshift_variant;ZKSCAN5|p.K541Nfs*52|1|0.32|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant;ZKSCAN5|p.N691Mfs*12|1|0.45|ENSG00000196652|chr7:99531795-99531795|A/-|frameshift_variant;ENSG00000196652|ENST00000326775|ZKSCAN5	ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant	ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	814.8997802734375	2	814.897109	1627.77966	0.94401	0.00076927	0.76548	0.00062379	1.7095	0.0013931	814.89753179889	22.496	0.36481	22.477	22.231	22.595	-0.018869					12	6	3	0	0	0	0.74191	1	7910	7910		0.30703	0.03801	1	3337300			11356	6092	6600	6641	10948	10948					-0.009114330285001415
FYQRFRHFQYH	11	Unmodified	_FYQRFRHFQYH_					0	0	0		ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant;ZKSCAN5|p.R547Tfs*4|1|0.06|ENSG00000196652|chr7:99531366-99531367|-/AACATTTCTTT|frameshift_variant;ZKSCAN5|p.K541Nfs*52|1|0.32|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant;ZKSCAN5|p.N691Mfs*12|1|0.45|ENSG00000196652|chr7:99531795-99531795|A/-|frameshift_variant;ENSG00000196652|ENST00000326775|ZKSCAN5	ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant	ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	815.4017944335938	2	814.897109	1627.77966	0.78438	0.00063919	1.1655	0.0009498	1.9499	0.001589	814.8977296866627	22.735	0.31352	22.498	22.289	22.603	-0.23758					9	5	2	0	0	0	0.74191	2	7942	7942;7966		0.30703	0.03801	1	2927100			11357	6092	6600	6641	10949;10950	10949					-0.009114330285001415
FYRFRLIQFYE	11	Unmodified	_FYRFRLIQFYE_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MSMS	HCT116MG_D190212_S3	3	791.4158935546875	2	791.414269	1580.81398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.799	1	44.49	43.99	44.99	-0.30927								0	0	0	0.95954	1	16755	16755		1.3295	0	1				11358	4375	6601	6642	10951	10951					0.04680970339768464
FYRVWCDNEFY	11	Unmodified	_FYRVWCDNEFY_					0	0	0			REV__ENST00000526890.5_1_11:3039642-3048038:-|nuORF	REV__ENST00000526890.5_1_11:3039642-3048038:-|nuORF	MSMS	HCT116MG_D190212_S2	2	770.8789672851562	2	771.329544	1540.64454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.341	1	32.111	31.611	32.611	-0.23009								0	0	0	0.94538	1	11963	11963		8.7454	3.8484	1		+		11359	11403	6602	6643	10952	10952					-0.10416094005108789
FYTDPFVSRD	10	Unmodified	_FYTDPFVSRD_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MSMS	HCT116MG_D190212_S3	3	623.7890625	2	623.790578	1245.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.213	1	29.963	29.463	30.463	-0.24946								0	0	0	0.91279	1	11003	11003		13.042	0.80181	1		+		11360	9934	6603	6644	10953	10953					-0.04635783598860144
FYVVMRKPRRR	11	Unmodified	_FYVVMRKPRRR_					0	0	0			REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF	REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF	MSMS	HCT116MG_D190212_S3	3	754.1114501953125	2	754.443172	1506.87179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.4	1	44.092	43.592	44.592	-0.30759								0	0	0	0.96141	1	16597	16597		0.35063	0	1		+		11361	16282	6604	6645	10954	10954					0.13862953784155252
FYYHQYYHQYD	11	Unmodified	_FYYHQYYHQYD_					0	0	0			REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF	REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF	MSMS	HCT116MG_D190212_S2	2	813.8355712890625	2	813.836048	1625.65754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.402	1	11.12	10.62	11.62	-0.28186								0	0	0	0.96208	1	3672	3672		0	0	1		+		11362	16175	6605	6646	10955	10955					-0.13025939621388716
FYYRWEHGTP	10	Unmodified	_FYYRWEHGTP_					0	0	0			REV__PAQR8|p.W80Gfs*72|1|0.17|ENSG00000170915|chr6:52403450-52403450|C/-|frameshift_variant	REV__PAQR8|p.W80Gfs*72|1|0.17|ENSG00000170915|chr6:52403450-52403450|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	678.3143920898438	2	678.312012	1354.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.188	1	17.017	16.517	17.517	-0.17047								0	0	0	0.93466	1	5683	5683		8.1555	2.8586	1		+		11363	13323	6606	6647	10956	10956					-0.05364968750791377
GAAAVLKK	8	Unmodified	_GAAAVLKK_					0	0	0			REV__nc|ENSG00000170653|P17544-3|ATF7	REV__nc|ENSG00000170653|P17544-3|ATF7	MSMS	HCT116MG_D190212_S3	3	379.2487487792969	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.95	1	54.658	54.158	55.158	-0.2918								0	0	0	0.8837	1	20833	20833		0.79363	0	1		+		11364	17209	6607	6648	10957	10957					0.09779024939552983
GAAAVVAAGEA	11	Unmodified	_GAAAVVAAGEA_					0	0	0			REV__RBL1|p.F102Lfs*4|1|0.49|ENSG00000080839|chr20:37068171-37068171|A/-|frameshift_variant	REV__RBL1|p.F102Lfs*4|1|0.49|ENSG00000080839|chr20:37068171-37068171|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	444.2321472167969	2	443.735074	885.455596	-0.20521	-9.1061E-05	-1.1431	-0.00050725	-1.3484	-0.00059832	443.73517701530494	18.762	0.52068	18.399	18.217	18.738	-0.36325					14	9	2	0	0	0	0.70691	1	6510	6510		19.257	0	1	62346000	+		11365	10871	6608	6649	10958	10958					0.008286214837085026
GAACARHA	8	Unmodified	_GAACARHA_					0	0	0			REV__HCFC1|p.R1136H|1|0.45|ENSG00000172534|chrX:153954992-153954992|C/T|missense_variant	REV__HCFC1|p.R1136H|1|0.45|ENSG00000172534|chrX:153954992-153954992|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	756.3569946289062	1	756.356967	755.349691	1.3664	0.0010335	-0.68666	-0.00051936	0.67973	0.00051412	756.3561452085261	46.917	0.61806	46.795	46.615	47.233	-0.12175					18	11	3	0	0	0	0.84759	1	17884	17884		5.7604	2.8712	1	155540000	+		11366	16867	6609	6650	10959	10959					-0.037769928427451305
GAACARHA	8	Unmodified	_GAACARHA_					0	0	0			REV__HCFC1|p.R1136H|1|0.45|ENSG00000172534|chrX:153954992-153954992|C/T|missense_variant	REV__HCFC1|p.R1136H|1|0.45|ENSG00000172534|chrX:153954992-153954992|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	756.356689453125	1	756.356967	755.349691	0.50282	0.00038032	-0.67781	-0.00051267	-0.17499	-0.00013235	756.3563424109071	47.143	0.41499	46.829	46.646	47.061	-0.31405					13	7	2	0	0	0	0.77285	1	17700	17700		14.582	11.692	1	20211000	+		11367	16867	6609	6650	10960	10960					-0.037769928427451305
GAACARHA	8	Unmodified	_GAACARHA_					0	0	0			REV__HCFC1|p.R1136H|1|0.45|ENSG00000172534|chrX:153954992-153954992|C/T|missense_variant	REV__HCFC1|p.R1136H|1|0.45|ENSG00000172534|chrX:153954992-153954992|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	756.356967	755.349691	1.3664	0.0010335	-0.68666	-0.00051936	0.67973	0.00051412	756.3561452085261	46.917	0.61806	46.795	46.615	47.233	-0.12175	-0.016834	-3.4076E-06	NaN	14.582	18	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155540000	+		11368	16867	6609	6650							-0.037769928427451305
GAACRSTH	8	Unmodified	_GAACRSTH_					0	0	0		ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	802.3631591796875	1	802.362447	801.35517	1.2055	0.00096724	-0.9087	-0.00072911	0.29679	0.00023814	802.3615633897037	33.341	0.36064	33.148	32.966	33.327	-0.19297					13	6	3	0	0	0	0.79062	1	12357	12357		12.532	0	1	108390000			11369	8099	6610	6651	10961	10961					-0.05345314050941852
GAAGLGPALG	10	Unmodified	_GAAGLGPALG_					0	0	0			REV__ENST00000262305.8_2_16:475669-476173:+|nuORF	REV__ENST00000262305.8_2_16:475669-476173:+|nuORF	MSMS	HCT116MG_D190212_S1	1	392.2216491699219	2	392.221603	782.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.347	1	21.347	20.847	21.847	0								0	0	0	0.77426	1	7505	7505		32.117	0	1		+		11370	14636	6611	6652	10962	10962					0.028735576631902404
GAAGLVSQP	9	Unmodified	_GAAGLVSQP_					0	0	0		ENST00000480451.1_1_22:17639835-17640015:-|nuORF	ENST00000480451.1_1_22:17639835-17640015:-|nuORF	ENST00000480451.1_1_22:17639835-17640015:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	400.21905517578125	2	400.21906	798.423567	-0.14639	-5.8589E-05	-0.62749	-0.00025113	-0.77388	-0.00030972	400.21882408661975	20.747	0.88485	20.782	20.298	21.183	0.034473					28	16	2	0	0	0	0.14171	1	7131	7131		49.933	1.5872	1	4160100			11371	8243	6612	6653	10963	10963					0.016292538005700408
GAAGLVSQP	9	Unmodified	_GAAGLVSQP_					0	0	0		ENST00000480451.1_1_22:17639835-17640015:-|nuORF	ENST00000480451.1_1_22:17639835-17640015:-|nuORF	ENST00000480451.1_1_22:17639835-17640015:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	400.2190246582031	2	400.21906	798.423567	0.12342	4.9396E-05	-1.0702	-0.00042831	-0.94677	-0.00037891	400.2185586659859	21.068	0.98685	20.858	20.24	21.227	-0.20959					26	18	2	0	0	0	0.26536	1	7125	7125		34.402	2.0962	1	3110100			11372	8243	6612	6653	10964	10964					0.016292538005700408
GAAGPDTEQH	10	Unmodified	_GAAGPDTEQH_					0	0	0			REV__nc|ENSG00000130182|Q96SZ4-3|ZSCAN10	REV__nc|ENSG00000130182|Q96SZ4-3|ZSCAN10	MULTI-MSMS	HCT116MG_D190212_S2	2	491.3956604003906	2	491.71487	981.415188	0.14849	7.3013E-05	0.22058	0.00010846	0.36906	0.00018147	491.7149276891873	11.926	0.27951	11.636	11.509	11.789	-0.28953					23	10	3	0	0	0	0.88673	1	3825	3825		1.8442	0.19162	1	1194100	+		11373	17125	6613	6654	10965	10965					-0.07626344906702798
GAAGPPGHRPP	11	Unmodified	_GAAGPPGHRPP_					0	0	0		ENST00000374103.8_1_10:50964838-50966574:-|nuORF	ENST00000374103.8_1_10:50964838-50966574:-|nuORF	ENST00000374103.8_1_10:50964838-50966574:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	506.75634765625	2	507.267407	1012.52026	0.38382	0.0001947	1.0517	0.0005335	1.4355	0.0007282	507.26770531820165	26.189	0.31281	26.053	25.903	26.216	-0.13586					9	5	2	0	0	0	0.34771	1	9426	9426		21.747	0	1	2392200			11374	7489	6614	6655	10966	10966					0.01450241080374326
GAAHSPAQPQ	10	Unmodified	_GAAHSPAQPQ_					0	0	0			REV__nc|ENSG00000183495|Q96L91-3|EP400	REV__nc|ENSG00000183495|Q96L91-3|EP400	MULTI-MSMS	HCT116MG_D190212_S3	3	482.2359313964844	2	482.235773	962.456993	0.15655	7.5493E-05	0.082789	3.9924E-05	0.23934	0.00011542	482.2357730595979	20.029	1.3539	20.077	19.166	20.52	0.048107					37	25	2	0	0	0	0.67188	1	6649	6649		22.736	2.2827	1	6227500	+		11375	13765	6615	6656	10967	10967					-0.02573744427525071
GAANQGNA	8	Unmodified	_GAANQGNA_					0	0	0			REV__RC3H2|p.F582Mfs*6|1|0.08|ENSG00000056586|chr9:122860022-122860023|-/AAAAGAAACAT|frameshift_variant	REV__RC3H2|p.F582Mfs*6|1|0.08|ENSG00000056586|chr9:122860022-122860023|-/AAAAGAAACAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	703.1343994140625	1	702.316542	701.309266	0.82617	0.00058024	0.59581	0.00041845	1.422	0.00099869	702.3167142925915	34.727	1.087	34.727	34.076	35.163	0					52	20	3	0	0	0	0.87576	1	12782	12782		0.79363	0	1	411060000	+		11376	10654	6616	6657	10968	10968					-0.05333635961528671
GAARAFVGQGW	11	Unmodified	_GAARAFVGQGW_					0	0	0			REV__ENST00000468778.5_1_2:74649977-74650720:+|nuORF	REV__ENST00000468778.5_1_2:74649977-74650720:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	559.7101440429688	2	560.28834	1118.56213	0.58381	0.0003271	-0.5019	-0.00028121	0.081913	4.5895E-05	560.2878387401686	31.37	0.20672	31.121	30.992	31.198	-0.24883					5	3	2	0	0	0	0.36183	1	11522	11522		5.7319	0	1	6806500	+		11377	15849	6617	6658	10969	10969					0.0075879676890053815
GAARGLPLL	9	Unmodified	_GAARGLPLL_					0	0	0			REV__PIWIL2|p.A151V|1|0.47|ENSG00000197181|chr8:22283060-22283060|C/T|missense_variant	REV__PIWIL2|p.A151V|1|0.47|ENSG00000197181|chr8:22283060-22283060|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	434.2747497558594	2	434.27417	866.533787	-0.00018576	-8.067E-08	0.10478	4.5504E-05	0.1046	4.5424E-05	434.2741146498753	46.144	0.7712	46.043	45.761	46.532	-0.1014					40	14	4	0	0	0	0.035402	1	17519	17519		81.864	0.25097	1	477430000	+		11378	14062	6618	6659	10970	10970					0.09518098859598467
GAARGLPLL	9	Unmodified	_GAARGLPLL_					0	0	0			REV__PIWIL2|p.A151V|1|0.47|ENSG00000197181|chr8:22283060-22283060|C/T|missense_variant	REV__PIWIL2|p.A151V|1|0.47|ENSG00000197181|chr8:22283060-22283060|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	434.27417	866.533787	-0.00018576	-8.067E-08	0.10478	4.5504E-05	0.1046	4.5424E-05	434.2741146498753	46.144	0.7712	46.043	45.761	46.532	-0.1014	-0.082922	0.00012108	NaN	81.864	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477430000	+		11379	14062	6618	6659							0.09518098859598467
GAASGLRY	8	Unmodified	_GAASGLRY_					0	0	0		ENST00000496814.1_1_7:27689076-27702407:-|nuORF;ENSG00000106049|ENST00000265395|HIBADH	ENST00000496814.1_1_7:27689076-27702407:-|nuORF	ENST00000496814.1_1_7:27689076-27702407:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	794.416259765625	1	794.415528	793.408252	0.80103	0.00063635	-0.23007	-0.00018277	0.57097	0.00045358	794.4152478511314	25.582	0.2091	25.213	25.03	25.239	-0.36914					5	3	2	0	0	0	0.36164	1	9228	9228		53.576	0	1	20606000			11380	2055	6619	6660	10971	10971					0.003283870033783387
GAASIQAF	8	Unmodified	_GAASIQAF_					0	0	0		ENST00000488337.5_1_11:116730256-116740867:-|nuORF;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000488337.5_1_11:116730256-116740867:-|nuORF	ENST00000488337.5_1_11:116730256-116740867:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	764.394287109375	1	764.39373	763.386454	1.3238	0.0010119	0.41057	0.00031384	1.7343	0.0013257	764.3940427410147	33.392	0.20404	33.2	33.123	33.327	-0.19297					5	3	2	0	0	0	0.36164	1	12422	12422		53.576	6.6547	1	13192000			11381	4453	6620	6661	10972	10972					-0.00470417745202667
GAAYRAEVSA	10	Unmodified	_GAAYRAEVSA_					0	0	0		ENST00000368654.7_1_10:129924009-129924492:-|nuORF	ENST00000368654.7_1_10:129924009-129924492:-|nuORF	ENST00000368654.7_1_10:129924009-129924492:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	497.7514343261719	2	497.751256	993.487959	0.61877	0.00030799	-0.058198	-2.8968E-05	0.56057	0.00027902	497.75117497458325	31.474	0.41469	31.225	31.043	31.458	-0.24883					18	7	4	0	0	0	0.26262	1	11612	11612		53.833	0	1	88076000			11382	7403	6621	6662	10973	10973					-0.00904591113294373
GAAYRAEVSA	10	Unmodified	_GAAYRAEVSA_					0	0	0		ENST00000368654.7_1_10:129924009-129924492:-|nuORF	ENST00000368654.7_1_10:129924009-129924492:-|nuORF	ENST00000368654.7_1_10:129924009-129924492:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	497.751256	993.487959	0.61877	0.00030799	-0.058198	-2.8968E-05	0.56057	0.00027902	497.75117497458325	31.474	0.41469	31.225	31.043	31.458	-0.24883	-0.037073	-4.7214E-05	NaN	53.833	18	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88076000			11383	7403	6621	6662							-0.00904591113294373
GAAYSGAGPPA	11	Unmodified	_GAAYSGAGPPA_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	HCT116MG_D190212_S4	4	459.71990966796875	2	459.719424	917.424296	0.16482	7.5772E-05	-0.096442	-4.4336E-05	0.06838	3.1436E-05	459.7193625950635	25.818	0.62443	25.528	25.204	25.828	-0.29023					19	11	2	0	0	0	0.72139	1	9166	9166		13.906	1.3745	1	2821200	+		11384	11840	6622	6663	10974	10974					-0.037719515503795265
GACGSYPP	8	Unmodified	_GACGSYPP_					0	0	0			REV__EGR2|p.S277Vfs*4|1|0.09|ENSG00000122877|chr10:62813810-62813810|G/-|frameshift_variant	REV__EGR2|p.S277Vfs*4|1|0.09|ENSG00000122877|chr10:62813810-62813810|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	376.15863037109375	2	376.157614	750.300675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.058	1	35.058	34.558	35.558	0								0	0	0	0.8837	1	13028	13028		5.7604	3.4577	1		+		11385	10442	6623	6664	10975	10975					-0.0844632592236394
GACLWLWGW	9	Unmodified	_GACLWLWGW_					0	0	0			REV__ENST00000342619.10_1_2:183943717-183943840:+|nuORF	REV__ENST00000342619.10_1_2:183943717-183943840:+|nuORF	MSMS	HCT116MG_D190212_S1	1	546.260009765625	2	546.260205	1090.50586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.163	1	16.163	15.663	16.663	0								0	0	0	0.76877	1	5421	5421		5.2307	2.3415	1		+		11386	14984	6624	6665	10976	10976					-0.03577547392114866
GADASANVFEP	11	Unmodified	_GADASANVFEP_					0	0	0			REV__ENSG00000173757|ENST00000293328|STAT5B	REV__ENSG00000173757|ENST00000293328|STAT5B	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.7742309570312	2	539.246003	1076.47745	0.73212	0.00039479	-0.5759	-0.00031055	0.15622	8.4242E-05	539.2455288080384	26.135	0.20798	25.773	25.662	25.87	-0.36164					5	3	2	0	0	0	0.36231	1	9408	9408		8.7454	1.4562	1	2564800	+		11387	13451	6625	6666	10977	10977					-0.0577261855839879
GADAYGNLP	9	Unmodified	_GADAYGNLP_					0	0	0		ENSG00000122592|ENST00000242159|HOXA7	ENSG00000122592|ENST00000242159|HOXA7	ENSG00000122592|ENST00000242159|HOXA7	MULTI-SECPEP	HCT116MG_D190212_S4	4	439.7078552246094	2	439.20615	876.397747	0.1977	8.6831E-05	-0.24385	-0.0001071	-0.046147	-2.0268E-05	439.2058830513415	31.089	0.20525	30.721	30.613	30.818	-0.36776					5	3	2	0	0	0	0.24195	1	11292	11292		4.3292	0	1	1894000			11388	2772	6626	6667	10978	10978					-0.04539640441726078
GADEMVRG	8	Unmodified	_GADEMVRG_					0	0	0			REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	834.3779907226562	1	834.377428	833.370152	0.7348	0.0006131	-0.19116	-0.0001595	0.54364	0.0004536	834.3773647955018	23.137	0.20825	22.752	22.622	22.83	-0.3852					6	3	2	0	0	0	0.46267	1	8251	8251		44.407	8.3628	1	26350000	+		11389	15966	6627	6668	10979	10979					-0.053198669735934345
GADIHSKEF	9	Unmodified	_GADIHSKEF_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF;nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D	nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000126012|P41229-4|KDM5C	MSMS	HCT116MG_D190212_S2	2	502.2456970214844	2	502.245806	1002.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.133	1	24.757	24.257	25.257	-0.37521								0	0	0	0.62451	1	9037	9037		22.736	9.6938	1				11390	9447;908	6628	6669	10980	10980					-0.02407993487577187
GADPGSPL	8	Unmodified	_GADPGSPL_					0	0	0			REV__ENST00000510072.1_1_5:180660708-180661192:+|nuORF	REV__ENST00000510072.1_1_5:180660708-180661192:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	357.1767578125	2	357.176861	712.339169	-0.1241	-4.4324E-05	-0.18287	-6.5318E-05	-0.30697	-0.00010964	357.1767716557829	24.854	0.25899	24.478	24.349	24.608	-0.37521					6	4	2	0	0	0	0.84415	1	8933	8933		6.3541	0	1	8884000	+		11391	16170	6629	6670	10981	10981					-0.028506970161970457
GADPSTVEM	9	Unmodified	_GADPSTVEM_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S1	1	906.3890991210938	1	906.387324	905.380048	0.76132	0.00069005	0.36505	0.00033087	1.1264	0.0010209	906.3877005863911	31.821	0.26089	31.821	31.7	31.961	0					6	4	2	0	0	0	0.049545	1	11730	11730		74.929	7.5851	1	7748400			11392	1578	6630	6671	10982	10982					-0.07642723758863212
GADPSTVEM	9	Unmodified	_GADPSTVEM_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S2	2	906.387939453125	1	906.387324	905.380048	0.86655	0.00078543	0.17421	0.0001579	1.0408	0.00094333	906.3874062358839	31.991	0.36218	31.761	31.58	31.942	-0.23009					13	6	3	0	0	0	0.042978	1	11826	11826		78.149	10.806	1	71811000			11393	1578	6630	6671	10983	10983					-0.07642723758863212
GADPSTVEM	9	Unmodified	_GADPSTVEM_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S3	3	906.3883666992188	1	906.387324	905.380048	0.53235	0.00048252	0.27961	0.00025343	0.81196	0.00073595	906.3874883572245	32.142	0.52045	31.864	31.682	32.202	-0.27841					22	9	3	0	0	0	0.031089	1	11752	11752		85.272	17.928	1	72658000			11394	1578	6630	6671	10984	10984					-0.07642723758863212
GADPSTVEM	9	Unmodified	_GADPSTVEM_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S4	4	906.3875732421875	1	906.387324	905.380048	0.59479	0.00053911	-0.26185	-0.00023734	0.33294	0.00030177	906.3872176439183	32.246	0.46706	31.871	31.642	32.109	-0.37529					17	8	3	0	0	0	0.042978	1	11720	11720		78.149	10.806	1	21660000			11395	1578	6630	6671	10985	10985					-0.07642723758863212
GADPSTVEM	9	Oxidation (M)	_GADPSTVEM(Oxidation (M))_		GADPSTVEM(1)		GADPSTVEM(110)	0	0	1		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S2	2	922.3876953125	1	922.382239	921.374962	0.86579	0.00079859	1.8234	0.0016818	2.6892	0.0024804	922.3838473186956	19.592	0.41572	19.217	19.039	19.455	-0.37473					17	7	3	0	0	0	0.012168	1	6819	6819		108	30.013	1	10006000			11396	1578	6630	6672	10986	10986		26			-0.08887027621483412
GADPSTVEM	9	Oxidation (M)	_GADPSTVEM(Oxidation (M))_		GADPSTVEM(1)		GADPSTVEM(110)	0	0	1		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S3	3	922.3838500976562	1	922.382239	921.374962	0.80779	0.00074509	1.31	0.0012083	2.1178	0.0019534	922.383623714439	19.389	0.52043	19.449	19.126	19.646	0.05983					20	9	3	0	0	0	0.012168	1	6591	6591		108	47.607	1	8187000			11397	1578	6630	6672	10987	10987		26			-0.08887027621483412
GADPSTVEM	9	Oxidation (M)	_GADPSTVEM(Oxidation (M))_		GADPSTVEM(1)		GADPSTVEM(96)	0	0	1		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000537175.1_1_12:16554488-16554707:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S4	4	922.3828735351562	1	922.382239	921.374962	0.73722	0.00068	2.4443	0.0022546	3.1815	0.0029346	922.3840291237442	19.532	0.5102	19.341	19.072	19.583	-0.19128					15	9	2	0	0	0	0.020181	1	6604	6604		96.285	18.3	1	6618300			11398	1578	6630	6672	10988	10988		26			-0.08887027621483412
GADRNLLVY	9	Unmodified	_GADRNLLVY_					0	0	0		ENST00000595833.1_1_19:21203606-21216480:+|nuORF;ENSG00000118620|ENST00000261560|ZNF430	ENST00000595833.1_1_19:21203606-21216480:+|nuORF	ENST00000595833.1_1_19:21203606-21216480:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.7770690917969	2	510.777274	1019.53999	0.4573	0.00023358	-0.54009	-0.00027587	-0.082788	-4.2286E-05	510.7769200709045	42.489	0.31234	42.419	42.273	42.585	-0.069981					10	5	2	0	0	0	0.26031	1	16101	16101		34.932	8.6639	1	31292000			11399	2612	6631	6673	10989	10989					0.031005723004682295
GADRNLLVY	9	Unmodified	_GADRNLLVY_					0	0	0		ENST00000595833.1_1_19:21203606-21216480:+|nuORF;ENSG00000118620|ENST00000261560|ZNF430	ENST00000595833.1_1_19:21203606-21216480:+|nuORF	ENST00000595833.1_1_19:21203606-21216480:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	510.777274	1019.53999	0.17613	8.9964E-05	0.54515	0.00027845	0.72128	0.00036841	510.77734696563357	42.492	0.20756	42.492	42.33	42.538	0	0.03633	0.0008972	NaN	34.932	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14337000			11400	2612	6631	6673							0.031005723004682295
GAEAERALV	9	Unmodified	_GAEAERALV_					0	0	0			REV__ENST00000403734.2_1_11:62494359-62494803:-|nuORF	REV__ENST00000403734.2_1_11:62494359-62494803:-|nuORF	MSMS	HCT116MG_D190212_S1	1	458.2477722167969	2	458.248349	914.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.406	1	34.406	33.906	34.906	0								0	0	0	0.30227	1	12765	12765		39.957	7.8404	1		+		11401	15402	6632	6674	10990	10990					0.02148310375048368
GAEAGGGFP	9	Unmodified	_GAEAGGGFP_					0	0	0		ENST00000464256.1_1_21:34132086-34144033:-|nuORF;nc|ENSG00000159086|Q9Y5B6-3|PAXBP1;nc|ENSG00000159086|Q9Y5B6-4|PAXBP1;PAXBP1|p.E759Dfs*7|1|0.05|ENSG00000159086|chr21:32743305-32743306|-/CCATAGGCTTAGA|frameshift_variant;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;PAXBP1|p.K834Qfs*32|2|0.12|ENSG00000159086|chr21:32737390-32737391|-/G|frameshift_variant;ENSG00000159086|ENST00000331923|PAXBP1	ENST00000464256.1_1_21:34132086-34144033:-|nuORF	ENST00000464256.1_1_21:34132086-34144033:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	381.67437744140625	2	381.674485	761.334418	-0.49205	-0.0001878	0.594	0.00022671	0.10195	3.8912E-05	381.6745742515237	18.45	0.31363	18.087	17.904	18.217	-0.36325					11	5	3	0	0	0	0.57626	1	6343	6343		12.532	0	1	48503000			11402	4395	6633	6675	10991	10991					-0.05579581158951896
GAEAGGLTDPP	11	Unmodified	_GAEAGGLTDPP_					0	0	0			REV__nc|ENSG00000147689|Q86UY5-3|FAM83A	REV__nc|ENSG00000147689|Q86UY5-3|FAM83A	MULTI-SECPEP	HCT116MG_D190212_S2	2	492.7351379394531	2	492.735271	983.45599	0.21853	0.00010768	-0.0085367	-4.2063E-06	0.20999	0.00010347	492.73511891250087	21.451	0.25928	21.068	20.91	21.169	-0.38288					7	4	2	0	0	0	0.35307	1	7574	7574		9.3831	0	1	6132500	+		11403	12524	6634	6676	10992	10992					-0.03640003587099727
GAEEGSLATLS	11	Unmodified	_GAEEGSLATLS_					0	0	0			REV__ENSG00000253117|ENST00000254627|OC90	REV__ENSG00000253117|ENST00000254627|OC90	MULTI-MSMS	HCT116MG_D190212_S4	4	518.7571411132812	2	517.753661	1033.49277	0.11079	5.7363E-05	0.82838	0.0004289	0.93918	0.00048626	517.7541486153749	23.057	0.52388	22.819	22.55	23.074	-0.23758					24	9	4	0	0	0	0.70991	1	8053	8053		18.146	3.3081	1	7003600	+		11404	14384	6635	6677	10993	10993					-0.022637517611883595
GAEFEGVG	8	Unmodified	_GAEFEGVG_					0	0	0			REV__ENST00000547505.2_1_12:44053856-44053916:+|nuORF	REV__ENST00000547505.2_1_12:44053856-44053916:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	765.3416137695312	1	765.34136	764.334084	0.79675	0.00060979	-0.27147	-0.00020777	0.52528	0.00040202	765.3407997157784	30.697	0.20666	30.43	30.301	30.508	-0.26704					6	3	2	0	0	0	0.47906	1	11299	11299		42.968	22.097	1	12984000	+		11405	10438	6636	6678	10994	10994					-0.05751000878785817
GAEGGLRVY	9	Unmodified	_GAEGGLRVY_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MSMS	HCT116MG_D190212_S2	2	461.2430725097656	2	461.243067	920.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.583	1	27.241	26.741	27.741	-0.34201								0	0	0	0.014248	1	10025	10025		100.37	18.507	1		+		11406	12857	6637	6679	10995	10995					0.008163277206108432
GAEHAGLWWMN	11	Unmodified	_GAEHAGLWWMN_					0	0	0		ENST00000551286.1_2_12:56708726-56709700:-|nuORF	ENST00000551286.1_2_12:56708726-56709700:-|nuORF	ENST00000551286.1_2_12:56708726-56709700:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	636.2848510742188	2	636.28494	1270.55533	0.33025	0.00021014	0.090357	5.7493E-05	0.42061	0.00026763	636.2850325620699	22.709	0.5218	22.471	22.133	22.655	-0.23758					14	9	2	0	0	0	0.70991	1	7871	7871		18.146	11.423	1	3519100			11407	8757	6638	6680	10996	10996					-0.06912884173971179
GAELSHLP	8	Unmodified	_GAELSHLP_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MSMS	HCT116MG_D190212_S1	1	412.2170104980469	2	412.21906	822.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.5	1	38.5	38	39	0								0	0	0	0.8837	1	14416	14416		2.5775	0	1		+		11408	13325	6639	6681	10997	10997					0.005252538005606766
GAEPGPPGSPG	11	Unmodified	_GAEPGPPGSPG_					0	0	0			REV__ENST00000344697.2_1_3:43122992-43147513:-|nuORF	REV__ENST00000344697.2_1_3:43122992-43147513:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	461.7168273925781	2	461.716882	921.41921	0.16517	7.6261E-05	0.27957	0.00012908	0.44474	0.00020534	461.71689592098113	19.646	0.98823	19.271	18.569	19.558	-0.37503					28	18	2	0	0	0	0.25546	1	6851	6851		69.105	13.602	1	7356500	+		11409	15004	6640	6682	10998	10998					-0.04464255412995044
GAEPGPPGSPG	11	Unmodified	_GAEPGPPGSPG_					0	0	0			REV__ENST00000344697.2_1_3:43122992-43147513:-|nuORF	REV__ENST00000344697.2_1_3:43122992-43147513:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	461.71685791015625	2	461.716882	921.41921	0.36637	0.00016916	0.10885	5.0259E-05	0.47523	0.00021942	461.71675616232864	19.367	1.7182	19.427	18.397	20.115	0.05983					58	32	3	0	0	0	0.06227	3	6631	6404;6631;6795		96.111	23.143	1	13542000	+		11410	15004	6640	6682	10999;11000;11001	11000					-0.04464255412995044
GAEPGPPGSPG	11	Unmodified	_GAEPGPPGSPG_					0	0	0			REV__ENST00000344697.2_1_3:43122992-43147513:-|nuORF	REV__ENST00000344697.2_1_3:43122992-43147513:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	461.717041015625	2	461.716882	921.41921	0.039712	1.8336E-05	0.43434	0.00020054	0.47405	0.00021888	461.7169372325432	19.49	1.4979	19.303	18.401	19.899	-0.18674					62	28	3	0	0	0	0.27854	2	6596	6596;6832		66.457	26.507	1	9367400	+		11411	15004	6640	6682	11002;11003	11002					-0.04464255412995044
GAEPSPPV	8	Unmodified	_GAEPSPPV_					0	0	0			REV__CDHR5|p.G554Rfs*161|1|0.26|ENSG00000099834|chr11:618899-618900|-/G|frameshift_variant	REV__CDHR5|p.G554Rfs*161|1|0.26|ENSG00000099834|chr11:618899-618900|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	753.3790283203125	1	753.377746	752.370469	0.94063	0.00070865	-0.19499	-0.0001469	0.74564	0.00056175	753.3775017481458	41.888	0.31276	41.888	41.706	42.019	0					8	5	2	0	0	0	0.5791	1	15811	15811		34.187	0.084896	1	13397000	+		11412	10139	6641	6683	11004	11004					-0.015621239820916344
GAEPSPWAG	9	Unmodified	_GAEPSPWAG_					0	0	0			REV__ENST00000533120.1_1_8:144648680-144649274:-|nuORF	REV__ENST00000533120.1_1_8:144648680-144649274:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	436.2005615234375	2	436.200867	870.387182	0.19108	8.335E-05	-0.32157	-0.00014027	-0.13049	-5.6919E-05	436.2006739756017	27.105	0.26066	26.935	26.755	27.016	-0.16933					8	4	3	0	0	0	0.36396	1	9770	9770		24.674	1.5255	1	2640700	+		11413	15383	6642	6684	11005	11005					-0.053196230961361834
GAEPSPWAG	9	Unmodified	_GAEPSPWAG_					0	0	0			REV__ENST00000533120.1_1_8:144648680-144649274:-|nuORF	REV__ENST00000533120.1_1_8:144648680-144649274:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	436.200867	870.387182	0.25291	0.00011032	0.26219	0.00011437	0.51509	0.00022468	436.20087943315485	27.249	0.41582	26.897	26.713	27.128	-0.35254	-0.019248	8.5113E-05	NaN	24.674	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85099000	+		11414	15383	6642	6684							-0.053196230961361834
GAEPSPWAG	9	Unmodified	_GAEPSPWAG_					0	0	0			REV__ENST00000533120.1_1_8:144648680-144649274:-|nuORF	REV__ENST00000533120.1_1_8:144648680-144649274:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	436.200867	870.387182	0.19108	8.335E-05	-0.32157	-0.00014027	-0.13049	-5.6919E-05	436.2006739756017	27.105	0.26066	26.935	26.755	27.016	-0.16933	0.019248	-0.00042416	NaN	24.674	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2640700	+		11415	15383	6642	6684							-0.053196230961361834
GAEPSPWQ	8	Unmodified	_GAEPSPWQ_					0	0	0			REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-MSMS	HCT116MG_D190212_S2	2	436.20086669921875	2	436.200867	870.387182	0.25291	0.00011032	0.26219	0.00011437	0.51509	0.00022468	436.20087943315485	27.249	0.41582	26.897	26.713	27.128	-0.35254					16	7	3	0	0	0	0.53394	1	9892	9892		38.151	7.9264	1	85099000	+		11416	13224	6643	6685	11006	11006					-0.053196230961361834
GAEPSTHGQ	9	Unmodified	_GAEPSTHGQ_					0	0	0			REV__ENSG00000189120|ENST00000536300|SP6	REV__ENSG00000189120|ENST00000536300|SP6	MSMS	HCT116MG_D190212_S1	1	442.2005920410156	2	442.198856	882.383159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.437	1	43.437	42.937	43.937	0								0	0	0	0.76923	1	16410	16410		3.5965	0.31518	1		+		11417	13990	6644	6686	11007	11007					-0.06273712589847946
GAEQLYQYF	9	Unmodified	_GAEQLYQYF_					0	0	0			REV__ENSG00000068354|ENST00000376771|TBC1D25	REV__ENSG00000068354|ENST00000376771|TBC1D25	MULTI-SECPEP	HCT116MG_D190212_S4	4	560.328125	2	559.761289	1117.50803	0.044371	2.4837E-05	-2.8796	-0.0016119	-2.8352	-0.0015871	559.7597660941927	38.377	0.14006	37.994	37.91	38.05	-0.38246					4	2	2	0	0	0	0.24622	1	14076	14076		7.2892	0	1	1235800	+		11418	10736	6645	6687	11008	11008					-0.04602840173333789
GAERARRWRRK	11	Unmodified	_GAERARRWRRK_					0	0	0			REV__ENSG00000224109|ENST00000417339|CENPVL3	REV__ENSG00000224109|ENST00000417339|CENPVL3	MULTI-SECPEP	HCT116MG_D190212_S4	4	720.6781616210938	2	721.421617	1440.82868	0.89184	0.00064339	-0.01725	-1.2444E-05	0.87459	0.00063095	721.9232777246233	54.812	1.0945	54.489	53.724	54.819	-0.32244					45	20	4	0	0	0	0.36536	1	20576	20576		7.1017	7.1017	1	15331000	+		11419	14302	6646	6688	11009	11009					0.12589900051079894
GAERQHGLWW	10	Unmodified	_GAERQHGLWW_					0	0	0			REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF	REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	414.1394348144531	3	413.872106	1238.59449	-0.025801	-1.0678E-05	1.5025	0.00062183	1.4767	0.00061116	413.87283471086494	33.756	0.15615	33.756	33.659	33.815	0					4	2	2	0	0	0	0.31143	1	12521	12521		1.7423	0.28716	1	3733500	+		11420	16433	6647	6689	11010	11010					-0.015264158281070195
GAESFVAWIP	10	Unmodified	_GAESFVAWIP_					0	0	0			REV__ENST00000588551.5_1_19:30101602-30101866:+|nuORF	REV__ENST00000588551.5_1_19:30101602-30101866:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	359.0283508300781	3	359.518559	1075.53385	-0.2162	-7.7726E-05	-0.30705	-0.00011039	-0.52324	-0.00018812	359.85289336101795	16.781	0.15613	16.865	16.756	16.912	0.084467					6	2	3	0	0	0	0.31054	1	5584	5584		1.9064	0.1641	1	754130	+		11421	16669	6648	6690	11011	11011					-0.0008994593106308457
GAEVKVIGVP	10	Unmodified	_GAEVKVIGVP_					0	0	0		ENST00000584657.1_1_17:61908799-61909039:+|nuORF	ENST00000584657.1_1_17:61908799-61909039:+|nuORF	ENST00000584657.1_1_17:61908799-61909039:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.7923278808594	2	484.792392	967.570232	0.40006	0.00019394	0.054188	2.627E-05	0.45425	0.00022021	484.7922793141296	36.276	0.25952	36.148	36.019	36.278	-0.12799					7	4	2	0	0	0	0.69918	1	13595	13595		20.454	2.3186	1	18626000			11422	8978	6649	6691	11012	11012					0.08514930965668555
GAEVKVIGVP	10	Unmodified	_GAEVKVIGVP_					0	0	0		ENST00000584657.1_1_17:61908799-61909039:+|nuORF	ENST00000584657.1_1_17:61908799-61909039:+|nuORF	ENST00000584657.1_1_17:61908799-61909039:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	484.792392	967.570232	-0.070553	-3.4204E-05	0.19383	9.3967E-05	0.12328	5.9764E-05	484.7923713471435	36.436	0.20789	36.135	35.989	36.197	-0.30113	-0.0063406	6.3371E-05	NaN	20.454	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2608800			11423	8978	6649	6691							0.08514930965668555
GAEYGFVV	8	Unmodified	_GAEYGFVV_					0	0	0			REV__TMEM126B|p.N60Kfs*3|1|0.37|ENSG00000171204|chr11:85631777-85631778|-/A|frameshift_variant	REV__TMEM126B|p.N60Kfs*3|1|0.37|ENSG00000171204|chr11:85631777-85631778|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	421.2074279785156	2	421.208161	840.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.234	1	58.063	57.563	58.563	-0.1703								0	0	0	0.8837	1	22501	22501		2.8892	0	1		+		11424	13335	6650	6692	11013	11013					-0.024815509480049514
GAFVGGHG	8	Unmodified	_GAFVGGHG_					0	0	0		ENST00000219069.5_1_16:3333727-3333910:+|nuORF	ENST00000219069.5_1_16:3333727-3333910:+|nuORF	ENST00000219069.5_1_16:3333727-3333910:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	701.3370361328125	1	701.33655	700.329273	0.069812	4.8962E-05	0.96075	0.00067381	1.0306	0.00072277	701.3371072537084	38.514	0.26081	38.514	38.332	38.592	0					6	4	2	0	0	0	0.86388	1	14439	14439		2.8892	2.0956	1	8764500			11425	6746	6651	6693	11014	11014					-0.032878402309052035
GAGADYGAP	9	Unmodified	_GAGADYGAP_					0	0	0			REV__ENSG00000137273|ENST00000645481|FOXF2	REV__ENSG00000137273|ENST00000645481|FOXF2	MULTI-MSMS	HCT116MG_D190212_S3	3	778.33740234375	1	778.336609	777.329333	0.54203	0.00042188	-0.07507	-5.843E-05	0.46696	0.00036345	778.3365320106292	30.995	0.26075	30.735	30.604	30.865	-0.26071					8	4	2	0	0	0	0.22969	1	11321	11321		38.151	2.107	1	7063600	+		11426	12170	6652	6694	11015	11015					-0.06823885021572096
GAGEASLEA	9	Unmodified	_GAGEASLEA_					0	0	0			REV__nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	REV__nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	HCT116MG_D190212_S2	2	804.3740234375	1	804.373389	803.366112	0.83174	0.00066903	0.14714	0.00011836	0.97888	0.00078739	804.3734213642086	25.478	0.20933	25.109	24.978	25.187	-0.36914					6	3	2	0	0	0	0.1037	1	9185	9185		57.471	0	1	12503000	+		11427	13191	6653	6695	11016	11016					-0.04343633195651364
GAGEASLEA	9	Unmodified	_GAGEASLEA_					0	0	0			REV__nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	REV__nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	MULTI-MSMS	HCT116MG_D190212_S4	4	804.3748779296875	1	804.373389	803.366112	1.055	0.00084864	0.025974	2.0893E-05	1.081	0.00086953	804.3737127535142	25.416	0.26007	25.136	25.006	25.266	-0.27958					6	4	2	0	0	0	0.088989	1	9023	9023		60.39	5.616	1	3090700	+		11428	13191	6653	6695	11017	11017					-0.04343633195651364
GAGEDVKRR	9	Unmodified	_GAGEDVKRR_					0	0	0			REV__nc|ENSG00000060491|Q9NZT2-2|OGFR	REV__nc|ENSG00000060491|Q9NZT2-2|OGFR	MSMS	HCT116MG_D190212_S3	3	494.2687683105469	2	494.270147	986.525741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.544	1	15.629	15.129	16.129	0.085423								0	0	0	0.76694	1	5094	5094		11.64	2.2929	1		+		11429	10668	6654	6696	11018	11018					0.031939198721943285
GAGGGGGR	8	Unmodified	_GAGGGGGR_					0	0	0		sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;sp|F5HDQ6|DNBI_HCMVMMajorDNA-bindingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=DBPPE=3SV=1;KMT2B|p.P174Qfs*20|1|0.38|ENSG00000272333|chr19:35719862-35719862|C/-|frameshift_variant;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;KMT2B|p.K553Qfs*46|1|0.45|ENSG00000272333|chr19:35720996-35720997|-/C|frameshift_variant;KMT2B|p.G934Efs*52|1|0.1|ENSG00000272333|chr19:35723069-35723069|G/-|frameshift_variant;KMT2B|p.A1049Gfs*39|1|0.32|ENSG00000272333|chr19:35723812-35723813|-/G|frameshift_variant;KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;KMT2B|p.P1201Rfs*154|1|0.37|ENSG00000272333|chr19:35725288-35725288|C/-|frameshift_variant;KMT2B|p.G1199Afs*156|1|0.16|ENSG00000272333|chr19:35725283-35725283|G/-|frameshift_variant;KMT2B|p.D1589Gfs*89|1|0.28|ENSG00000272333|chr19:35729058-35729059|-/G|frameshift_variant;KMT2B|p.P1821Hfs*74|1|0.36|ENSG00000272333|chr19:35731927-35731927|C/-|frameshift_variant;KMT2B|p.G1879Vfs*16|5|0.4|ENSG00000272333|chr19:35732101-35732101|G/-|frameshift_variant;KMT2B|p.R1911Dfs*23|1|0.18|ENSG00000272333|chr19:35732274-35732274|C/-|frameshift_variant;KMT2B|p.L2136Pfs*17|1|0.27|ENSG00000272333|chr19:35732956-35732956|T/-|frameshift_variant;KMT2B|p.G2123Vfs*30|1|0.34|ENSG00000272333|chr19:35732913-35732913|G/-|frameshift_variant;KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;REV__ENSG00000175745|ENST00000327111|NR2F1;REV__ENSG00000188573|ENST00000338333|FBLL1;REV__nc|ENSG00000187556|P60323|NANOS3	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	589.4371337890625	1	588.284848	587.277572	0.66896	0.00039354	-1.2175	-0.00071624	-0.54854	-0.0003227	588.2842957083437	36.552	0.25874	36.438	36.292	36.55	-0.11478					6	4	2	0	0	0	0.87576	1	13618	13618		0.79363	0	1	6036400			11430	18197;6666;13528;13959;17252	6655	6697	11019	11019					-0.03257583924823848
GAGGGSGQR	9	Unmodified	_GAGGGSGQR_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-MSMS	HCT116MG_D190212_S4	4	746.35498046875	1	746.353991	745.346714	0.74476	0.00055586	0.56167	0.00041921	1.3064	0.00097506	746.3542297719887	32.043	1.4538	31.668	31.018	32.472	-0.37529					59	27	3	0	0	0	0.70732	1	11943	11943		4.756	0.42677	1	125280000			11431	9557	6656	6698	11020	11020					-0.03614544695915356
GAGGGSGQR	9	Unmodified	_GAGGGSGQR_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	746.353991	745.346714	0.39588	0.00029546	0.9413	0.00070255	1.3372	0.00099801	746.3544843808453	31.931	1.5628	31.661	31.012	32.575	-0.27027	-0.0031879	0.00013229	NaN	4.756	56	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121880000			11432	9557	6656	6698							-0.03614544695915356
GAGGPYPR	8	Unmodified	_GAGGPYPR_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	HCT116MG_D190212_S3	3	774.39013671875	1	774.389313	773.382037	0.75117	0.0005817	0.089401	6.9231E-05	0.84057	0.00065093	774.389139810072	29.018	0.41645	28.796	28.473	28.89	-0.22195					10	7	2	0	0	0	0.47906	1	10507	10507		42.968	2.5194	1	3115800			11433	4842	6657	6699	11021	11021					-0.013718821680981819
GAGGSVLY	8	Unmodified	_GAGGSVLY_					0	0	0		nc|ENSG00000107736|Q9H251-5|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23;CDH23|p.F3223Lfs*43|1|0.34|ENSG00000107736|chr10:71812773-71812773|T/-|frameshift_variant;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23	nc|ENSG00000107736|Q9H251-5|CDH23	nc|ENSG00000107736|Q9H251-5|CDH23	MULTI-MSMS	HCT116MG_D190212_S2	2	723.3683471679688	1	723.367181	722.359904	0.86976	0.00062915	0.16099	0.00011646	1.0307	0.00074561	723.3673015074367	32.406	0.31235	32.176	32.046	32.359	-0.23009					8	5	2	0	0	0	0.47906	1	12002	12002		42.968	2.5194	1	26440000			11434	385	6658	6700	11022	11022					-0.012381066365264815
GAGVGHLR	8	Unmodified	_GAGVGHLR_					0	0	0			REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	383.7197570800781	2	383.719562	765.42457	0.057206	2.1951E-05	0.63332	0.00024302	0.69052	0.00026497	383.71957672036825	22.394	0.93491	22.009	21.635	22.57	-0.3852					25	17	2	0	0	0	0.6854	1	7930	7930		24.674	0	1	34903000	+		11435	17541	6659	6701	11023	11023					0.03247512960126642
GAGVGHLR	8	Unmodified	_GAGVGHLR_					0	0	0			REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	384.2233581542969	2	383.719562	765.42457	-0.070205	-2.6939E-05	0.57542	0.0002208	0.50521	0.00019386	383.71953276000124	21.859	1.0486	21.86	21.306	22.354	0.00074577					41	19	3	0	0	0	0.78216	1	7520	7520		13.508	0	1	45492000	+		11436	17541	6659	6701	11024	11024					0.03247512960126642
GAGVGHLR	8	Unmodified	_GAGVGHLR_					0	0	0			REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	384.5195007324219	2	383.719562	765.42457	-0.17729	-6.8031E-05	0.17802	6.8308E-05	0.00072156	2.7688E-07	383.7195873870129	20.341	0.46858	20.389	20.207	20.676	0.048107					15	8	2	0	0	0	0.2761	1	7033	7033		14.582	0	1	6487200	+		11437	17541	6659	6701	11025	11025					0.03247512960126642
GAGVGHLR	8	Unmodified	_GAGVGHLR_					0	0	0			REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	384.2233581542969	2	383.719562	765.42457	-0.070205	-2.6939E-05	0.57542	0.0002208	0.50521	0.00019386	383.71953276000124	21.859	1.0486	21.86	21.306	22.354	0.00074577					41	19	3	0	0	0	0.30262	1	7520	7520		13.508	0	1	45492000	+		11438	17541	6659	6701	11026	11026					0.03247512960126642
GAGVGHLR	8	Unmodified	_GAGVGHLR_					0	0	0			REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	383.7193603515625	2	383.719562	765.42457	0.070847	2.7185E-05	-0.18734	-7.1884E-05	-0.11649	-4.4699E-05	383.7193999471694	20.678	0.41571	20.476	20.3	20.716	-0.20133					12	7	3	0	0	0	0.73076	1	7096	7096		19.439	0	1	5502900	+		11439	17541	6659	6701	11027	11027					0.03247512960126642
GAGVGHLR	8	Unmodified	_GAGVGHLR_					0	0	0			REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	REV__SOX9|p.K61Efs*191|1|0.22|ENSG00000125398|chr17:72121569-72121570|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	383.719562	765.42457	0.059825	2.2956E-05	0.38834	0.00014901	0.44817	0.00017197	383.7194490486135	22.14	0.88296	21.912	21.468	22.351	-0.22777	-0.024608	-0.00010317	NaN	24.674	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39296000	+		11440	17541	6659	6701							0.03247512960126642
GAGWAEGY	8	Unmodified	_GAGWAEGY_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2;CDHR2|p.G788Vfs*4|1|0.31|ENSG00000074276|chr5:176584639-176584639|G/-|frameshift_variant	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MULTI-MSMS	HCT116MG_D190212_S2	2	810.3419799804688	1	810.341694	809.334418	0.87488	0.00070895	-0.53477	-0.00043334	0.34012	0.00027561	810.3411742245638	20.915	0.20795	20.532	20.443	20.651	-0.38288					5	3	2	0	0	0	0.76257	1	7354	7354		15.768	1.1865	1	12780000			11441	388	6660	6702	11028	11028					-0.07787581158947887
GAHHGPTM	8	Unmodified	_GAHHGPTM_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	HCT116MG_D190212_S3	3	807.357421875	1	807.356633	806.349357	0.88665	0.00071585	-0.66482	-0.00053675	0.22183	0.00017909	807.3558656026328	54.983	0.41832	54.691	54.508	54.927	-0.2918					19	7	4	0	0	0	0.84759	1	20835	20835		5.7604	5.7604	1	105490000			11442	3160	6661	6703	11029	11029					-0.061564125625977795
GAHRAMAA	8	Unmodified	_GAHRAMAA_					0	0	0			REV__ENST00000373045.10_1_1:38259590-38259821:+|nuORF	REV__ENST00000373045.10_1_1:38259590-38259821:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	784.3880004882812	1	784.388268	783.380991	1.1726	0.00091976	-1.2818	-0.0010055	-0.10926	-8.5702E-05	784.386934604265	44.699	0.31265	44.614	44.482	44.794	-0.084797					7	5	2	0	0	0	0.86388	1	17021	17021		2.8892	0	1	10520000	+		11443	15184	6662	6704	11030	11030					-0.019364198086577744
GAHSGLLY	8	Unmodified	_GAHSGLLY_					0	0	0			REV__DCAF8L1|p.R187C|1|0.05|ENSG00000226372|chrX:27980776-27980776|G/A|missense_variant	REV__DCAF8L1|p.R187C|1|0.05|ENSG00000226372|chrX:27980776-27980776|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	409.2138977050781	2	409.213778	816.413003	-0.097863	-4.0047E-05	0.61919	0.00025338	0.52132	0.00021333	409.21384587775896	23.236	0.26035	23.236	23.054	23.314	0					9	4	3	0	0	0	0.64761	1	8274	8274		28.173	1.832	1	12692000	+		11444	10332	6663	6705	11031	11031					-0.0025472885387216593
GAHYNRHGI	9	Unmodified	_GAHYNRHGI_					0	0	0			REV__ENST00000496131.1_1_1:44442124-44442513:+|nuORF	REV__ENST00000496131.1_1_1:44442124-44442513:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	513.1922607421875	2	512.757207	1023.49986	0.51866	0.00026595	-1.1429	-0.00058603	-0.62424	-0.00032009	512.7565396702068	31.258	0.15633	31.258	31.128	31.284	0					4	2	2	0	0	0	0.26096	1	11458	11458		0.6015	0.076735	1	4066600	+		11445	11613	6664	6706	11032	11032					-0.010949295794375757
GAIFWMWVSA	10	Unmodified	_GAIFWMWVSA_					0	0	0		tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	584.765380859375	2	584.28642	1166.55829	0.70454	0.00041165	-0.37833	-0.00022105	0.32621	0.0001906	584.7870594862619	17.854	0.1563	17.854	17.724	17.88	0					4	2	2	0	0	0	0.30812	1	6110	6110		11.64	1.5664	1	1306100			11446	18353	6665	6707	11033	11033					-0.018330090491872397
GAIGSPGPA	9	Unmodified	_GAIGSPGPA_					0	0	0		COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	726.37890625	1	726.37808	725.370804	0.52692	0.00038274	0.53175	0.00038625	1.0587	0.00076899	726.3783611570469	23.58	0.52118	23.541	23.291	23.812	-0.03968					14	9	2	0	0	0	0.1037	1	8330	8330		57.471	0	1	4519200			11447	519	6666	6708	11034	11034					-0.0028670426223698087
GAIGSPGPA	9	Unmodified	_GAIGSPGPA_					0	0	0		COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	726.37890625	1	726.37808	725.370804	0.79534	0.00057772	0.051001	3.7046E-05	0.84634	0.00061476	726.377934527468	23.738	0.57202	23.491	23.272	23.844	-0.24775					15	10	2	0	0	0	0.088989	1	8296	8296		60.39	0	1	3700800			11448	519	6666	6708	11035	11035					-0.0028670426223698087
GAKGKGGG	8	Unmodified	_GAKGKGGG_					0	0	0		ENST00000569326.2_1_8:145724500-145725055:-|nuORF	ENST00000569326.2_1_8:145724500-145725055:-|nuORF	ENST00000569326.2_1_8:145724500-145725055:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	631.3526611328125	1	631.3522	630.344923	0.50152	0.00031664	2.0651	0.0013038	2.5667	0.0016205	631.3533586925753	48.383	0.51429	48.383	48.152	48.666	0					11	9	2	0	0	0	0.87635	1	18418	18418		0.69038	0.088878	1	36639000			11449	8880	6667	6709	11036	11036					0.014964462861485117
GAKGKGGG	8	Unmodified	_GAKGKGGG_					0	0	0		ENST00000569326.2_1_8:145724500-145725055:-|nuORF	ENST00000569326.2_1_8:145724500-145725055:-|nuORF	ENST00000569326.2_1_8:145724500-145725055:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	631.35400390625	1	631.3522	630.344923	0.82791	0.0005227	1.9454	0.0012282	2.7733	0.0017509	631.3532335606831	47.743	0.41346	47.61	47.377	47.79	-0.13281					11	7	2	0	0	0	0.87635	1	18223	18223		0.69038	0.088878	1	35173000			11450	8880	6667	6709	11037	11037					0.014964462861485117
GAKGKGGG	8	Unmodified	_GAKGKGGG_					0	0	0		ENST00000569326.2_1_8:145724500-145725055:-|nuORF	ENST00000569326.2_1_8:145724500-145725055:-|nuORF	ENST00000569326.2_1_8:145724500-145725055:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	631.3522	630.344923	0.69519	0.00043891	2.5621	0.0016176	3.2573	0.0020565	631.3536543640788	47.284	0.89724	47.284	46.543	47.441	0	-0.16273	6.3172E-05	NaN	0.69038	20	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76734000			11451	8880	6667	6709							0.014964462861485117
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S2	2	391.28436279296875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.229	1	15.894	15.394	16.394	-0.33451								0	0	0	0.97045	1	5447	5447		0.15932	0.15932	1				11452	7718	6668	6710	11038	11038					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S2	2	391.2840270996094	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.224	1	18.855	18.355	19.355	-0.3695								0	0	0	0.96804	1	6654	6654		0.69767	0.46182	1				11453	7718	6668	6710	11039	11039					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S2	2	391.2845153808594	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.788	1	20.408	19.908	20.908	-0.37949								0	0	0	0.97054	1	7282	7282		0.13989	0.13989	1				11454	7718	6668	6710	11040	11040					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S3	3	391.28411865234375	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.202	1	20.251	19.751	20.751	0.048107								0	0	0	0.96804	1	6973	6973		0.69767	0.69767	1				11455	7718	6668	6710	11041	11041					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S3	3	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.777	1	20.812	20.312	21.312	0.034473								0	0	0	0.96804	1	7205	7205		0.69767	0.69767	1				11456	7718	6668	6710	11042	11042					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S4	4	391.28436279296875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.985	1	18.799	18.299	19.299	-0.18674								0	0	0	0.96769	1	6409	6409		0.77653	0.77653	1				11457	7718	6668	6710	11043	11043					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S4	4	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.694	1	20.491	19.991	20.991	-0.2029								0	0	0	0.96804	1	7099	7099		0.69767	0.69767	1				11458	7718	6668	6710	11044	11044					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S4	4	391.28411865234375	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.255	1	21.045	20.545	21.545	-0.20959								0	0	0	0.96804	1	7327	7327		0.69767	0.69767	1				11459	7718	6668	6710	11045	11045					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S4	4	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.83	1	21.612	21.112	22.112	-0.21832								0	0	0	0.96804	1	7559	7559		0.69767	0.69767	1				11460	7718	6668	6710	11046	11046					0.25026506998392506
GAKKKKKKKK	10	Unmodified	_GAKKKKKKKK_					0	0	0		ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	ENST00000406961.5_1_2:24991338-24991476:+|nuORF	MSMS	HCT116MG_D190212_S4	4	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.714	1	23.466	22.966	23.966	-0.24775								0	0	0	0.96804	1	8317	8317		0.69767	0.69767	1				11461	7718	6668	6710	11047	11047					0.25026506998392506
GAKQGRRA	8	Unmodified	_GAKQGRRA_					0	0	0			REV__RPGRIP1|p.I758Hfs*10|1|0.36|ENSG00000092200|chr14:21325283-21325284|-/C|frameshift_variant	REV__RPGRIP1|p.I758Hfs*10|1|0.36|ENSG00000092200|chr14:21325283-21325284|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	422.2494812011719	2	422.249018	842.483482	0.20939	8.8415E-05	-0.12533	-5.2922E-05	0.084058	3.5493E-05	422.24887556029387	45.308	0.85509	44.935	44.646	45.501	-0.37266					23	16	2	0	0	0	0.8672	1	16660	16660		2.3027	0	1	8513100	+		11462	11014	6669	6711	11048	11048					0.055939892544643044
GAKQGRRA	8	Unmodified	_GAKQGRRA_					0	0	0			REV__RPGRIP1|p.I758Hfs*10|1|0.36|ENSG00000092200|chr14:21325283-21325284|-/C|frameshift_variant	REV__RPGRIP1|p.I758Hfs*10|1|0.36|ENSG00000092200|chr14:21325283-21325284|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	422.249018	842.483482	0.15471	6.5328E-05	-0.19557	-8.258E-05	-0.040857	-1.7252E-05	422.2488846274751	45.307	0.76503	44.997	44.488	45.253	-0.31025	0.03072	-3.2848E-05	NaN	2.3027	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5520300	+		11463	11014	6669	6711							0.055939892544643044
GAKRHSGL	8	Unmodified	_GAKRHSGL_					0	0	0			REV__ENST00000521249.1_1_14:102697914-102698193:-|nuORF	REV__ENST00000521249.1_1_14:102697914-102698193:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	413.2384033203125	2	413.238119	824.461684	0.081895	3.3842E-05	0.012692	5.2447E-06	0.094587	3.9087E-05	413.2380929673068	41.664	1.589	41.664	40.897	42.486	0					43	30	2	0	0	0	0.8672	1	15566	15566		2.3027	0	1	10661000	+		11464	10870	6670	6712	11049	11049					0.04243184505912723
GAKRHSGL	8	Unmodified	_GAKRHSGL_					0	0	0			REV__ENST00000521249.1_1_14:102697914-102698193:-|nuORF	REV__ENST00000521249.1_1_14:102697914-102698193:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	413.238119	824.461684	0.081895	3.3842E-05	0.012692	5.2447E-06	0.094587	3.9087E-05	413.2380929673068	41.664	1.589	41.664	40.897	42.486	0	-0.024613	-1.2018E-05	NaN	2.3027	43	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10661000	+		11465	10870	6670	6712							0.04243184505912723
GAKRHSGL	8	Unmodified	_GAKRHSGL_					0	0	0			REV__ENST00000521249.1_1_14:102697914-102698193:-|nuORF	REV__ENST00000521249.1_1_14:102697914-102698193:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	413.238119	824.461684	0.14802	6.1167E-05	0.044991	1.8592E-05	0.19301	7.9759E-05	413.2381164829826	42.089	1.2069	41.713	41.342	42.549	-0.37565	0.024613	1.4677E-05	NaN	2.3027	45	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3845700	+		11466	10870	6670	6712							0.04243184505912723
GAKSGKGA	8	Unmodified	_GAKSGKGA_					0	0	0		ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	ENSG00000183617|ENST00000330133|MRPL54	MULTI-MSMS	HCT116MG_D190212_S1	1	675.3799438476562	1	675.378414	674.371138	0.67556	0.00045626	1.6148	0.0010906	2.2903	0.0015468	675.3791657984765	44.867	0.57078	44.867	44.464	45.034	0					15	10	2	0	0	0	0.87685	1	16954	16954		0.6015	0	1	45811000			11467	5727	6671	6713	11050	11050					0.02092715457615668
GALEAAMA	8	Unmodified	_GALEAAMA_					0	0	0		nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	MULTI-MSMS	HCT116MG_D190212_S2	2	733.3554077148438	1	733.354902	732.347625	0.88627	0.00064995	1.2929	0.00094813	2.1791	0.0015981	733.3559077983866	50.199	0.35793	50.027	49.78	50.138	-0.17191					8	6	2	0	0	0	0.8029	1	19260	19260		11.114	0	1	18826000			11468	9470	6672	6714	11051	11051					-0.02925466371220864
GALELPELRRR	11	Unmodified	_GALELPELRRR_					0	0	0		ENSG00000059378|ENST00000263549|PARP12;PARP12|p.K455Rfs*14|1|0.3|ENSG00000059378|chr7:140034292-140034292|T/-|frameshift_variant	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MSMS	HCT116MG_D190212_S2	2	655.3868408203125	2	655.388585	1308.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.285	1	28.969	28.469	29.469	-0.31613								0	0	0	0.95581	1	10721	10721		3.2813	0.28607	1				11469	1103	6673	6715	11052	11052					0.12058646365699133
GALEQSQL	8	Unmodified	_GALEQSQL_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MSMS	HCT116MG_D190212_S3	3	423.2237854003906	2	423.2218	844.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.492	1	43.186	42.686	43.686	-0.30616								0	0	0	0.8837	1	16230	16230		15.768	5.5848	1				11470	6646	6674	6716	11053	11053					0.0006093259237331949
GALFAWLVDP	10	Unmodified	_GALFAWLVDP_					0	0	0			REV__ENST00000416379.6_2_7:98445757-98445799:-|nuORF	REV__ENST00000416379.6_2_7:98445757-98445799:-|nuORF	MSMS	HCT116MG_D190212_S1	1	544.7723999023438	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.55	1	15.55	15.05	16.05	0								0	0	0	0.93576	1	5174	5174		7.9102	0	1		+		11471	15476	6675	6717	11054	11054					0.0299493096565584
GALGQQQSLGA	11	Unmodified	_GALGQQQSLGA_					0	0	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	HCT116MG_D190212_S1	1	515.27001953125	2	515.269813	1028.52507	0.61676	0.0003178	0.61279	0.00031575	1.2295	0.00063355	515.2698168972314	17.489	0.41728	17.489	17.255	17.672	0					12	7	2	0	0	0	0.6626	1	5971	5971		28.495	5.3461	1	3648600			11472	929	6676	6718	11055	11055					0.011950804324669662
GALKIRKIIKE	11	Unmodified	_GALKIRKIIKE_					0	0	0			REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	REV__tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	634.9246826171875	2	634.924272	1267.83399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.792	1	40.792	40.292	41.292	0								0	0	0	0.95925	1	15342	15342		1.4819	0.15237	1		+		11473	17867	6677	6719	11056	11056					0.21078766070331767
GALLPRRQP	9	Unmodified	_GALLPRRQP_					0	0	0			REV__ENST00000533277.5_1_11:66613305-66613563:+|nuORF	REV__ENST00000533277.5_1_11:66613305-66613563:+|nuORF	MSMS	HCT116MG_D190212_S3	3	504.2801513671875	2	504.309075	1006.6036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.276	1	39.974	39.474	40.474	-0.30158								0	0	0	0.7689	1	14947	14947		4.756	0.42677	1		+		11474	13448	6678	6720	11057	11057					0.10055977528224957
GALLSGQY	8	Unmodified	_GALLSGQY_					0	0	0			REV__ENSG00000147036|ENST00000378619|LANCL3	REV__ENSG00000147036|ENST00000378619|LANCL3	MULTI-MSMS	HCT116MG_D190212_S2	2	404.71356201171875	2	404.713611	807.412668	-0.16329	-6.6087E-05	0.44382	0.00017962	0.28052	0.00011353	404.71363148378896	23.085	0.26018	22.7	22.57	22.83	-0.3852					11	4	3	0	0	0	0.60268	1	8212	8212		32.117	1.8922	1	31150000	+		11475	12503	6679	6721	11058	11058					0.0012585142628722679
GALPPGQL	8	Unmodified	_GALPPGQL_					0	0	0		ENST00000327876.4_1_2:47747956-47748880:-|nuORF	ENST00000327876.4_1_2:47747956-47748880:-|nuORF	ENST00000327876.4_1_2:47747956-47748880:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	376.7185363769531	2	376.718696	751.422839	-0.15443	-5.8176E-05	-0.10531	-3.9673E-05	-0.25974	-9.7849E-05	376.71858161264186	34.184	0.20755	34.009	33.916	34.124	-0.17511					5	3	2	0	0	0	0.55314	1	12732	12732		36.466	8.2929	1	15664000			11476	7146	6680	6722	11059	11059					0.03718459151514253
GAMGPQGRP	9	Oxidation (M)	_GAM(Oxidation (M))GPQGRP_		GAM(1)GPQGRP		GAM(47)GPQGRP	0	0	1		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1;ENST00000488128.6_1_1:32121928-32135507:-|nuORF;COL16A1|p.G1288S|1|0.36|ENSG00000084636|chr1:31660602-31660602|C/T|missense_variant	nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S1	1	443.713623046875	2	443.713619	885.412685	0.28912	0.00012829	-0.68842	-0.00030546	-0.3993	-0.00017717	443.7132634261419	17.489	0.41729	17.489	17.307	17.724	0					9	7	2	0	0	0	0.1569	1	5965	5965		46.921	10.877	1	4659900			11477	1447	6681	6723	11060	11060		24			-0.03460471845357915
GAMGPQGRP	9	Oxidation (M)	_GAM(Oxidation (M))GPQGRP_		GAM(1)GPQGRP		GAM(60)GPQGRP	0	0	1		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1;ENST00000488128.6_1_1:32121928-32135507:-|nuORF;COL16A1|p.G1288S|1|0.36|ENSG00000084636|chr1:31660602-31660602|C/T|missense_variant	nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S2	2	443.7136535644531	2	443.713619	885.412685	0.12665	5.6194E-05	-0.012551	-5.5689E-06	0.11409	5.0625E-05	443.71355533613155	17.929	0.4699	17.572	17.388	17.858	-0.35647					21	8	4	0	0	0	0.088989	1	6134	6134		60.39	18.295	1	33505000			11478	1447	6681	6723	11061	11061		24			-0.03460471845357915
GAMGPQGRP	9	Oxidation (M)	_GAM(Oxidation (M))GPQGRP_		GAM(1)GPQGRP		GAM(71)GPQGRP	0	0	1		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1;ENST00000488128.6_1_1:32121928-32135507:-|nuORF;COL16A1|p.G1288S|1|0.36|ENSG00000084636|chr1:31660602-31660602|C/T|missense_variant	nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S2	2	886.4210205078125	1	886.419962	885.412685	0.77355	0.00068569	-0.096689	-8.5707E-05	0.67686	0.00059998	886.4201510125407	17.915	0.20905	17.559	17.441	17.65	-0.35647					6	3	2	0	0	0	0.058138	1	6162	6162		70.716	10.326	1	3558300			11479	1447	6681	6723	11062	11062		24			-0.03460471845357915
GAMGPQGRP	9	Oxidation (M)	_GAM(Oxidation (M))GPQGRP_		GAM(1)GPQGRP		GAM(54)GPQGRP	0	0	1		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1;ENST00000488128.6_1_1:32121928-32135507:-|nuORF;COL16A1|p.G1288S|1|0.36|ENSG00000084636|chr1:31660602-31660602|C/T|missense_variant	nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S3	3	443.7136535644531	2	443.713619	885.412685	-0.046217	-2.0507E-05	0.39228	0.00017406	0.34606	0.00015355	443.71363836460995	17.01	0.46823	17.094	16.912	17.381	0.084467					17	8	3	0	0	0	0.12335	1	5666	5666		53.576	11.481	1	13757000			11480	1447	6681	6723	11063	11063		24			-0.03460471845357915
GAMGPQGRP	9	Oxidation (M)	_GAM(Oxidation (M))GPQGRP_		GAM(1)GPQGRP		GAM(54)GPQGRP	0	0	1		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1;ENST00000488128.6_1_1:32121928-32135507:-|nuORF;COL16A1|p.G1288S|1|0.36|ENSG00000084636|chr1:31660602-31660602|C/T|missense_variant	nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S4	4	443.71356201171875	2	443.713619	885.412685	-0.11083	-4.9177E-05	-0.057894	-2.5689E-05	-0.16872	-7.4865E-05	443.7136045259677	17.255	0.30935	17.085	16.915	17.225	-0.17047					8	5	2	0	0	0	0.12335	1	5722	5722		53.576	17.531	1	2429700			11481	1447	6681	6723	11064	11064		24			-0.03460471845357915
GANPAAMNAS	10	Unmodified	_GANPAAMNAS_					0	0	0		nc|ENSG00000146360|P46095-2|GPR6	nc|ENSG00000146360|P46095-2|GPR6	nc|ENSG00000146360|P46095-2|GPR6	MULTI-MSMS	HCT116MG_D190212_S2	2	452.20294189453125	2	452.203084	902.391615	-0.0037167	-1.6807E-06	-0.47966	-0.00021691	-0.48338	-0.00021859	452.202756165153	14.694	0.31295	14.375	14.244	14.557	-0.31952					7	5	2	0	0	0	0.78781	1	4844	4844		13.042	0.51092	1	1342600			11482	9494	6682	6724	11065	11065					-0.06348481944894502
GANSPLEEVY	10	Unmodified	_GANSPLEEVY_					0	0	0			REV__nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	REV__nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	MULTI-SECPEP	HCT116MG_D190212_S2	2	540.2205200195312	2	539.756204	1077.49785	0.71546	0.00038618	3.0575	0.0016503	3.773	0.0020365	539.7579325188902	36.276	0.20727	36.148	36.019	36.226	-0.12799					5	3	2	0	0	0	0.26351	1	13552	13552		29.082	2.1979	1	9863600	+		11483	12908	6683	6725	11066	11066					-0.03779447898568833
GAPAPCPCR	9	Unmodified	_GAPAPCPCR_					0	0	0			REV__ENST00000344450.9_1_6:292224-292323:+|nuORF	REV__ENST00000344450.9_1_6:292224-292323:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	436.19952392578125	2	436.19929	870.384028	0.25613	0.00011173	0.71509	0.00031192	0.97122	0.00042365	436.19950354643413	20.617	0.72764	20.416	19.988	20.716	-0.20133					16	13	2	0	0	0	0.59184	1	7025	7025		11.64	0	1	1729000	+		11484	15001	6684	6726	11067	11067					-0.0563491274616581
GAPASNHL	8	Unmodified	_GAPASNHL_					0	0	0			REV__ENSG00000197961|ENST00000320451|ZNF121	REV__ENSG00000197961|ENST00000320451|ZNF121	MSMS	HCT116MG_D190212_S2	2	383.6961669921875	2	383.695752	765.376952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.994	1	11.704	11.204	12.204	-0.28953								0	0	0	0.8837	1	3898	3898		5.7604	0	1		+		11485	14098	6685	6727	11068	11068					-0.015121860307317547
GAPCGWAWP	9	Unmodified	_GAPCGWAWP_					0	0	0			REV__IGFBP4|p.V42Wfs*52|2|0.41|ENSG00000141753|chr17:40443852-40443852|C/-|frameshift_variant	REV__IGFBP4|p.V42Wfs*52|2|0.41|ENSG00000141753|chr17:40443852-40443852|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	472.7079162597656	2	472.707805	943.401058	0.27946	0.0001321	0.048197	2.2783E-05	0.32766	0.00015489	472.70778658698265	19.53	0.5622	19.339	19.021	19.583	-0.19104					14	10	2	0	0	0	0.54041	1	6629	6629		14.582	14.582	1	1825200	+		11486	16897	6686	6728	11069	11069					-0.07290668868711236
GAPCTCAG	8	Unmodified	_GAPCTCAG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant;REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	679.2548217773438	1	679.253807	678.246531	0.77181	0.00052425	1.0794	0.00073316	1.8512	0.0012574	679.2543193915624	25.744	0.31376	25.744	25.614	25.927	0					8	5	2	0	0	0	0.84759	1	9311	9311		5.7604	0	1	4627600	+		11487	12881;17016	6687	6729	11070	11070					-0.10546241345571161
GAPDAPSPGPG	11	Unmodified	_GAPDAPSPGPG_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-SECPEP	HCT116MG_D190212_S3	3	462.2325439453125	2	461.716882	921.41921	0.36637	0.00016916	0.10885	5.0259E-05	0.47523	0.00021942	461.71675616232864	19.367	1.7182	19.427	18.397	20.115	0.05983					58	32	3	0	0	0	0.33325	1	6646	6646		24.021	1.2843	1	13542000			11488	9569	6688	6730	11071	11071					-0.04464255412995044
GAPEKVPV	8	Unmodified	_GAPEKVPV_					0	0	0			REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	REV__ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	796.4552612304688	1	796.45633	795.449054	0.75548	0.0006017	-2.9611	-0.0023584	-2.2056	-0.0017567	796.4541094587165	42.926	0.31256	42.926	42.795	43.108	0					8	5	2	0	0	0	0.82475	1	16265	16265		8.5933	2.2392	1	4674300	+		11489	16048	6689	6731	11072	11072					0.04314728323004147
GAPGAPGPSGP	11	Unmodified	_GAPGAPGPSGP_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S4	4	864.4218139648438	1	864.421007	863.413731	0.89649	0.00077494	0.041873	3.6196E-05	0.93836	0.00081114	864.4208783038159	25.38	1.092	25.101	24.434	25.526	-0.27958					40	20	3	0	0	0	0.54229	1	9121	9121		41.84	3.8656	1	9032200	+		11490	13219	6690	6732	11073	11073					-0.023439342047936407
GAPGEPGPQG	10	Unmodified	_GAPGEPGPQG_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1;COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant;COL8A1|p.P576Lfs*20|1|0.09|ENSG00000144810|chr3:99795624-99795624|C/-|frameshift_variant;COL8A1|p.H599Mfs*24|2|0.46|ENSG00000144810|chr3:99795690-99795690|C/-|frameshift_variant	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-MSMS	HCT116MG_D190212_S2	2	866.4007568359375	1	866.400272	865.392996	0.75858	0.00065724	-0.37934	-0.00032866	0.37924	0.00032857	866.3998422592139	16.429	0.41759	16.087	15.786	16.204	-0.34183					10	7	2	0	0	0	0.020806	1	5536	5536		118.89	15.541	1	3230800			11491	3885	6691	6733	11074	11074					-0.04508524584468887
GAPGEPGPQG	10	Unmodified	_GAPGEPGPQG_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1;COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant;COL8A1|p.P576Lfs*20|1|0.09|ENSG00000144810|chr3:99795624-99795624|C/-|frameshift_variant;COL8A1|p.H599Mfs*24|2|0.46|ENSG00000144810|chr3:99795690-99795690|C/-|frameshift_variant	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-MSMS	HCT116MG_D190212_S3	3	866.4010620117188	1	866.400272	865.392996	0.73247	0.00063462	0.20793	0.00018015	0.9404	0.00081477	866.4003928593451	15.959	0.57241	16.045	15.717	16.289	0.085423					17	10	3	0	0	0	0.027291	1	5246	5246		107.19	14.534	1	4531400			11492	3885	6691	6733	11075	11075					-0.04508524584468887
GAPGPEGPPA	10	Unmodified	_GAPGPEGPPA_					0	0	0			REV__COL5A1|p.G1348A|2|0.46|ENSG00000130635|chr9:134815604-134815604|G/C|missense_variant	REV__COL5A1|p.G1348A|2|0.46|ENSG00000130635|chr9:134815604-134815604|G/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	850.0758056640625	1	849.410108	848.402832	0.61208	0.00051991	0.083095	7.0582E-05	0.69518	0.00059049	849.4103778748656	20.393	1.1456	20.442	19.791	20.936	0.048107					26	21	2	0	0	0	0.21782	1	7170	7170		54.774	10.915	1	3175200	+		11493	10241	6692	6734	11076	11076					-0.027433365791011965
GAPGPSGKP	9	Unmodified	_GAPGPSGKP_					0	0	0		nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-MSMS	HCT116MG_D190212_S1	1	383.8675537109375	2	384.205953	766.397353	-0.078675	-3.0227E-05	0.26247	0.00010084	0.1838	7.0615E-05	384.20585936760205	15.197	0.26101	15.197	15.066	15.327	0					7	4	2	0	0	0	0.41514	1	5051	5051		21.747	2.3076	1	2138200			11494	5201	6693	6735	11077	11077					0.004809846290982023
GAPGPSGKP	9	Unmodified	_GAPGPSGKP_					0	0	0		nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-MSMS	HCT116MG_D190212_S2	2	384.20599365234375	2	384.205953	766.397353	-0.19258	-7.399E-05	0.30916	0.00011878	0.11658	4.4789E-05	384.2059620851588	15.216	0.52137	14.889	14.55	15.071	-0.32684					19	9	3	0	0	0	0.41514	1	4966	4966		21.747	2.3076	1	8932700			11495	5201	6693	6735	11078	11078					0.004809846290982023
GAPIRSLKRRR	11	Unmodified	_GAPIRSLKRRR_					0	0	0			REV__ENST00000491568.6_1_X:100878151-100878310:+|nuORF	REV__ENST00000491568.6_1_X:100878151-100878310:+|nuORF	MSMS	HCT116MG_D190212_S2	2	655.4168701171875	2	655.418011	1308.82147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.586	1	33.393	32.893	33.893	-0.19297								0	0	0	0.95521	1	12468	12468		3.5965	0.31518	1		+		11496	16041	6694	6736	11079	11079					0.17941167450658213
GAPLSGLQ	8	Unmodified	_GAPLSGLQ_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	HCT116MG_D190212_S2	2	742.4127807617188	1	742.40938	741.402104	1.1222	0.00083317	-0.26175	-0.00019433	0.8605	0.00063884	742.409197144139	32.912	0.57085	32.701	32.221	32.792	-0.21135					15	10	2	0	0	0	0.40466	1	12154	12154		49.669	2.748	1	38146000			11497	3141	6695	6737	11080	11080					0.021058687718550573
GAPLSGLQ	8	Unmodified	_GAPLSGLQ_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MATCH	HCT116MG_D190212_S1	1		1	742.40938	741.402104	0.79233	0.00058824	1.1992	0.0008903	1.9915	0.0014785	742.4106356474952	32.629	0.31293	32.629	32.378	32.691	0	-0.036028	0.00091263	NaN	49.669	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3976600			11498	3141	6695	6737							0.021058687718550573
GAPMVYGPPP	10	Unmodified	_GAPMVYGPPP_					0	0	0		ENST00000373851.6_1_9:123874787-123912836:+|nuORF;CNTRL|p.N1300Tfs*22|1|0.32|ENSG00000119397|chr9:121150412-121150412|C/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;CNTRL|p.K1802Sfs*9|2|0.21|ENSG00000119397|chr9:121162247-121162247|A/-|frameshift_variant;ENSG00000119397|ENST00000373855|CNTRL	ENST00000373851.6_1_9:123874787-123912836:+|nuORF	ENST00000373851.6_1_9:123874787-123912836:+|nuORF	MSMS	HCT116MG_D190212_S3	3	493.7304382324219	2	493.244221	984.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.641	1	15.727	15.227	16.227	0.085423								0	0	0	0.88269	1	5133	5133		18.135	0	1				11499	507	6696	6738	11081	11081					-0.018969598659282383
GAPNPAQV	8	Unmodified	_GAPNPAQV_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-MSMS	HCT116MG_D190212_S2	2	377.1981506347656	2	377.198128	752.381703	-0.11618	-4.3823E-05	0.002536	9.5659E-07	-0.11364	-4.2867E-05	377.1980482676828	27.038	0.31659	26.686	26.554	26.871	-0.35254					8	5	2	0	0	0	0.66848	1	9831	9831		26.341	3.8886	1	16387000			11500	5719	6697	6739	11082	11082					-0.004393018879568444
GAPPLGLV	8	Unmodified	_GAPPLGLV_					0	0	0			REV__nc|ENSG00000010219|Q9NR20-5|DYRK4	REV__nc|ENSG00000010219|Q9NR20-5|DYRK4	MULTI-MSMS	HCT116MG_D190212_S1	1	723.4384155273438	1	723.439952	722.432676	0.69	0.00049917	-3.4186	-0.0024731	-2.7286	-0.001974	723.4372855848028	47.672	0.2966	47.672	47.492	47.789	0					7	5	2	0	0	0	0.84415	1	18144	18144		6.3541	0	1	13458000	+		11501	10512	6698	6740	11083	11083					0.06035647156897994
GAPPLGLV	8	Unmodified	_GAPPLGLV_					0	0	0			REV__nc|ENSG00000010219|Q9NR20-5|DYRK4	REV__nc|ENSG00000010219|Q9NR20-5|DYRK4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	723.439952	722.432676	0.69	0.00049917	-3.4186	-0.0024731	-2.7286	-0.001974	723.4372855848028	47.672	0.2966	47.672	47.492	47.789	0	0	0	NaN	6.3541	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13458000	+		11502	10512	6698	6740							0.06035647156897994
GAPQQQQPGA	10	Unmodified	_GAPQQQQPGA_					0	0	0			REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MSMS	HCT116MG_D190212_S4	4	491.24078369140625	2	491.241055	980.467557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.829	1	16.662	16.162	17.162	-0.16664								0	0	0	0.72975	1	5538	5538		36.127	3.8215	1		+		11503	12265	6699	6741	11084	11084					-0.023457617730855418
GAPRHGQQP	9	Unmodified	_GAPRHGQQP_					0	0	0		ENST00000561247.1_1_15:84946796-84950583:+|nuORF	ENST00000561247.1_1_15:84946796-84950583:+|nuORF	ENST00000561247.1_1_15:84946796-84950583:+|nuORF	MSMS	HCT116MG_D190212_S3	3	474.2434387207031	2	474.243932	946.473312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.772	1	17.853	17.353	18.353	0.081358								0	0	0	0.71969	1	5993	5993		18.135	0	1				11504	8815	6700	6742	11085	11085					-0.0020661847075871265
GAPSPPGA	8	Unmodified	_GAPSPPGA_					0	0	0		COL22A1|p.G672S|1|0.37|ENSG00000169436|chr8:138755174-138755174|C/T|missense_variant	COL22A1|p.G672S|1|0.37|ENSG00000169436|chr8:138755174-138755174|C/T|missense_variant	COL22A1|p.G672S|1|0.37|ENSG00000169436|chr8:138755174-138755174|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	653.325927734375	1	653.325316	652.31804	0.58925	0.00038497	0.13066	8.5366E-05	0.71992	0.00047034	653.3252633455827	28.333	0.25896	28.003	27.874	28.133	-0.32987					7	4	2	0	0	0	0.84759	1	10332	10332		5.7604	0	1	30528000			11505	517	6701	6743	11086	11086					-0.022026623250440025
GAPSYGASPP	10	Unmodified	_GAPSYGASPP_					0	0	0			REV__ENSG00000205476|ENST00000380243|CCDC85C	REV__ENSG00000205476|ENST00000380243|CCDC85C	MSMS	HCT116MG_D190212_S3	3	452.66790771484375	2	452.213975	902.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.797	1	24.713	24.213	25.213	-0.083694								0	0	0	0.85468	1	8823	8823		21.747	3.6117	1		+		11506	14226	6702	6744	11087	11087					-0.04171353924664345
GAPVHVSY	8	Unmodified	_GAPVHVSY_					0	0	0			REV__ENST00000473217.5_1_17:27902646-27905994:-|nuORF	REV__ENST00000473217.5_1_17:27902646-27905994:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	829.1560668945312	1	829.420279	828.413003	0.94219	0.00078147	0.18528	0.00015367	1.1275	0.00093515	829.4203401155078	24.489	0.20848	24.108	23.979	24.187	-0.38003					5	3	2	0	0	0	0.3238	1	8742	8742		5.7604	0.52976	1	10930000	+		11507	11340	6703	6745	11088	11088					-0.008067288538541106
GAPVQHELR	9	Unmodified	_GAPVQHELR_					0	0	0			REV__ENST00000472870.5_1_1:156260850-156262824:-|nuORF	REV__ENST00000472870.5_1_1:156260850-156262824:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	504.2535095214844	2	503.775065	1005.53558	0.34097	0.00017177	-0.7593	-0.00038252	-0.41833	-0.00021074	503.77496208732595	21.649	0.31731	21.668	21.43	21.747	0.018446					7	5	2	0	0	0	0.24195	1	7567	7567		19.257	6.2145	1	995640	+		11508	15886	6704	6746	11089	11089					0.033031078775593414
GAPVSSPAQ	9	Unmodified	_GAPVSSPAQ_					0	0	0		ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	ENST00000327247.9_1_1:155210492-155214452:-|nuORF	MSMS	HCT116MG_D190212_S3	3	407.2088928222656	2	407.208692	812.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.134	1	24.073	23.573	24.573	-0.061449								0	0	0	0.71969	1	8556	8556		18.135	0	1				11509	7141	6705	6747	11090	11090					-0.010873365790871503
GAPYFWNGIKK	11	Unmodified	_GAPYFWNGIKK_					0	0	0			REV__tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	REV__tr|U7T3U4|U7T3U4_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00263PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	641.0916137695312	2	640.842948	1279.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.3	1	37.197	36.697	37.697	-0.10318								0	0	0	0.95113	1	13977	13977		5.7319	0	1		+		11510	17958	6706	6748	11091	11091					0.04269382668348953
GAQFGFNY	8	Unmodified	_GAQFGFNY_					0	0	0		ENSG00000165730|ENST00000298596|STOX1	ENSG00000165730|ENST00000298596|STOX1	ENSG00000165730|ENST00000298596|STOX1	MSMS	HCT116MG_D190212_S2	2	452.2032775878906	2	452.20341	902.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.847	1	11.558	11.058	12.058	-0.28953								0	0	0	0.8837	1	3842	3842		0.79363	0	1				11511	4794	6707	6749	11092	11092					-0.06283319233534712
GAQLVAQP	8	Unmodified	_GAQLVAQP_					0	0	0			REV__ENST00000491277.1_1_1:214706191-214706551:-|nuORF	REV__ENST00000491277.1_1_1:214706191-214706551:-|nuORF	MSMS	HCT116MG_D190212_S3	3	392.2214660644531	2	392.221603	782.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.495	1	23.455	22.955	23.955	-0.03968								0	0	0	0.77419	1	8298	8298		24.674	5.2349	1		+		11512	16037	6708	6750	11093	11093					0.028735576631788717
GAQRPRRIET	10	Unmodified	_GAQRPRRIET_					0	0	0		ENST00000376377.2_1_6:30711502-30711607:-|nuORF	ENST00000376377.2_1_6:30711502-30711607:-|nuORF	ENST00000376377.2_1_6:30711502-30711607:-|nuORF	MSMS	HCT116MG_D190212_S2	2	592.4867553710938	2	592.336353	1182.65815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.93	1	39.857	39.357	40.357	-0.072838								0	0	0	0.84701	1	15044	15044		22.736	0	1				11513	7514	6709	6751	11094	11094					0.07412944608995531
GAQSELKAP	9	Unmodified	_GAQSELKAP_					0	0	0			REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	450.7437744140625	2	450.742899	899.471246	0.040346	1.8186E-05	0.13322	6.0048E-05	0.17357	7.8233E-05	450.7428913168634	22.955	1.4987	22.936	22.751	24.25	-0.018869					51	28	2	0	0	0	0.30509	1	8066	8066		30.225	3.3412	1	16303000	+		11514	11183	6710	6752	11095	11095					0.017489080007635494
GARACFGGL	9	Unmodified	_GARACFGGL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MSMS	HCT116MG_D190212_S1	1	426.2140197753906	2	426.213255	850.411957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.695	1	40.695	40.195	41.195	0								0	0	0	0.7689	1	15303	15303		4.756	0	1				11515	2485	6711	6753	11096	11096					-0.019232664944070166
GARGGGGG	8	Unmodified	_GARGGGGG_					0	0	0		nc|ENSG00000180891|Q9NWM3-2|CUEDC1;ENSG00000180891|ENST00000577830|CUEDC1;ENST00000472410.5_1_1:27687327-27687848:-|nuORF;ENST00000433688.2_2_11:63531028-63531832:-|nuORF;CUEDC1|p.F320Nfs*12|1|0.3|ENSG00000180891|chr17:57868223-57868226|CAAA/-|frameshift_variant	nc|ENSG00000180891|Q9NWM3-2|CUEDC1;REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	588.2852172851562	1	588.284848	587.277572	0.66322	0.00039016	-0.087591	-5.1528E-05	0.57562	0.00033863	588.2846737321447	34.632	0.51969	34.632	34.285	34.804	0					15	9	2	0	0	0	0.87576	1	12795	12795		0.79363	0	1	22501000			11516	13516;5614	6712	6754	11097	11097					-0.032575839248124794
GARIQPLL	8	Unmodified	_GARIQPLL_					0	0	0			REV__ENST00000527629.5_1_11:58912289-58913312:+|nuORF	REV__ENST00000527629.5_1_11:58912289-58913312:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	434.7758483886719	2	434.27417	866.533787	0.33945	0.00014741	-0.18926	-8.2192E-05	0.15018	6.5221E-05	434.27403193567744	46.523	0.45808	46.152	45.974	46.432	-0.37134					20	10	3	0	0	0	0.29313	1	17164	17164		59.795	3.2539	1	16186000	+		11517	16289	6713	6755	11098	11098					0.09518098859598467
GARLTYSGWL	10	Unmodified	_GARLTYSGWL_					0	0	0			REV__DOK2|p.R167W|1|0.27|ENSG00000147443|chr8:21910792-21910792|G/A|missense_variant	REV__DOK2|p.R167W|1|0.27|ENSG00000147443|chr8:21910792-21910792|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	375.2001953125	3	375.201341	1122.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.611	1	18.611	18.111	19.111	0								0	0	0	0.92607	1	6407	6407		5.7834	0.73591	1		+		11518	10405	6714	6756	11099	11099					0.025805477088624684
GARQQGGG	8	Unmodified	_GARQQGGG_					0	0	0			REV__ENSG00000089280|ENST00000254108|FUS	REV__ENSG00000089280|ENST00000254108|FUS	MULTI-MSMS	HCT116MG_D190212_S1	1	730.3604125976562	1	730.359076	729.351799	0.64395	0.00047031	0.13441	9.8166E-05	0.77835	0.00056848	730.3590167900477	44.168	0.31751	44.168	43.986	44.304	0					7	5	2	0	0	0	0.8506	1	16744	16744		5.2307	0	1	8935800	+		11519	10972	6715	6757	11100	11100					-0.02370240833272419
GARQQGGG	8	Unmodified	_GARQQGGG_					0	0	0			REV__ENSG00000089280|ENST00000254108|FUS	REV__ENSG00000089280|ENST00000254108|FUS	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	730.359076	729.351799	0.64395	0.00047031	0.13441	9.8166E-05	0.77835	0.00056848	730.3590167900477	44.168	0.31751	44.168	43.986	44.304	0	0.016169	1.6684E-05	NaN	5.2307	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8935800	+		11520	10972	6715	6757							-0.02370240833272419
GARQQGGG	8	Unmodified	_GARQQGGG_					0	0	0			REV__ENSG00000089280|ENST00000254108|FUS	REV__ENSG00000089280|ENST00000254108|FUS	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	730.359076	729.351799	0.79192	0.00057838	-0.14284	-0.00010433	0.64907	0.00047406	730.3590262919389	44.225	0.41558	44.147	43.916	44.332	-0.078373	-0.0045853	-0.00018581	NaN	5.2307	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51191000	+		11521	10972	6715	6757							-0.02370240833272419
GARSKLKQGHL	11	Unmodified	_GARSKLKQGHL_					0	0	0			REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	MULTI-MSMS	HCT116MG_D190212_S1	1	597.8564453125	2	597.856921	1193.69929	0.49231	0.00029433	-0.90873	-0.00054329	-0.41642	-0.00024896	597.8563749459003	51.73	0.41907	51.73	51.549	51.968	0					12	7	2	0	0	0	0.74191	1	19784	19784		2.9952	1.3426	1	14792000	+		11522	14355	6716	6758	11101	11101					0.11018705648461946
GARSKLKQGHL	11	Unmodified	_GARSKLKQGHL_					0	0	0			REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	597.856921	1193.69929	0.49231	0.00029433	-0.90873	-0.00054329	-0.41642	-0.00024896	597.8563749459003	51.73	0.41907	51.73	51.549	51.968	0	0	0	NaN	2.9952	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14792000	+		11523	14355	6716	6758							0.11018705648461946
GASFMVGG	8	Unmodified	_GASFMVGG_					0	0	0			REV__ENST00000496303.5_1_7:4815289-4829878:+|nuORF	REV__ENST00000496303.5_1_7:4815289-4829878:+|nuORF	MSMS	HCT116MG_D190212_S4	4	363.16900634765625	2	363.167982	724.32141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.569	1	38.187	37.687	38.687	-0.38163								0	0	0	0.8837	1	14140	14140		2.5775	0	1		+		11524	16089	6717	6759	11102	11102					-0.05177735542679329
GASFMVGG	8	Unmodified	_GASFMVGG_					0	0	0			REV__ENST00000496303.5_1_7:4815289-4829878:+|nuORF	REV__ENST00000496303.5_1_7:4815289-4829878:+|nuORF	MSMS	HCT116MG_D190212_S4	4	363.1689147949219	2	363.167982	724.32141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.149	1	38.768	38.268	39.268	-0.38055								0	0	0	0.8837	1	14374	14374		2.5775	0	1		+		11525	16089	6717	6759	11103	11103					-0.05177735542679329
GASGGGGGAR	10	Unmodified	_GASGGGGGAR_					0	0	0		ENST00000490362.1_1_2:217498183-217525611:+|nuORF;ENSG00000115457|ENST00000233809|IGFBP2	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	746.8728637695312	1	746.353991	745.346714	1.175	0.00087697	0.07727	5.7671E-05	1.2523	0.00093464	746.3539488912772	31.836	1.1401	31.587	31.043	32.183	-0.24883					28	21	2	0	0	0	0.31042	1	11694	11694		1.3295	0.72803	1	120520000			11526	2468	6718	6760	11104	11104					-0.03614544695903987
GASRGGGG	8	Unmodified	_GASRGGGG_					0	0	0			REV__TRIOBP|p.Q326Kfs*553|1|0.36|ENSG00000100106|chr22:37723530-37723530|C/-|frameshift_variant	REV__TRIOBP|p.Q326Kfs*553|1|0.36|ENSG00000100106|chr22:37723530-37723530|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	618.2953491210938	1	618.295413	617.288137	0.5725	0.00035397	-0.23052	-0.00014253	0.34197	0.00021144	618.2950686877417	33.675	1.145	33.675	33.556	34.701	0					24	21	2	0	0	0	0.86564	1	12746	12746		2.5775	0	1	7734200	+		11527	11067	6719	6761	11105	11105					-0.03581601270377632
GASRSETPQNS	11	Unmodified	_GASRSETPQNS_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-5|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	567.2852172851562	2	567.262716	1132.51088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.226	1	21.226	20.726	21.726	0								0	0	0	0.92983	1	7457	7457		16.149	1.3108	1				11528	619	6720	6762	11106	11106					-0.050076167864745
GASVPPHQSSP	11	Unmodified	_GASVPPHQSSP_					0	0	0		ENST00000590187.2_1_19:19337677-19349276:+|nuORF;ENSG00000130287|ENST00000252575|NCAN	ENST00000590187.2_1_19:19337677-19349276:+|nuORF	ENST00000590187.2_1_19:19337677-19349276:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	532.2763061523438	2	532.261988	1062.50942	0.45259	0.0002409	0.056395	3.0017E-05	0.50898	0.00027091	532.2619078092786	21.77	0.89289	21.783	21.213	22.106	0.013304					35	16	3	0	0	0	0.35292	1	7415	7415		15.248	5.8654	1	7360400			11529	3068	6721	6763	11107	11107					-0.019332060845727028
GASVVVHFRRL	11	Unmodified	_GASVVVHFRRL_					0	0	0			REV__ENST00000526852.5_1_11:10879166-10879364:-|nuORF	REV__ENST00000526852.5_1_11:10879166-10879364:-|nuORF	MSMS	HCT116MG_D190212_S4	4	414.2486877441406	3	414.247285	1239.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.959	1	59.687	59.187	60.187	-0.27156								0	0	0	0.95954	1	22578	22578		0.45452	0	1		+		11530	16279	6722	6764	11108	11108					0.10975296028141202
GATATSEVL	9	Unmodified	_GATATSEVL_					0	0	0			REV__nc|ENSG00000115750|Q53T94-3|TAF1B	REV__nc|ENSG00000115750|Q53T94-3|TAF1B	MSMS	HCT116MG_D190212_S1	1	424.7220153808594	2	424.721633	847.428712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.182	1	26.182	25.682	26.682	0								0	0	0	0.71969	1	9449	9449		18.135	1.1927	1		+		11531	11556	6723	6765	11109	11109					-0.0011048712748333855
GATGFPGSAG	10	Unmodified	_GATGFPGSAG_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	821.3801879882812	1	821.378808	820.371532	1.0637	0.00087368	0.26508	0.00021773	1.3288	0.0010914	821.3790583080803	27.747	0.88406	27.559	26.945	27.829	-0.18847					20	16	2	0	0	0	0.052604	1	10042	10042		85.272	20.037	1	4257500			11532	528	6724	6766	11110	11110					-0.04583909613177184
GATGFPGSAG	10	Unmodified	_GATGFPGSAG_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	821.3793334960938	1	821.378808	820.371532	0.86339	0.00070917	0.17105	0.0001405	1.0344	0.00084967	821.378990885939	27.918	0.76954	27.597	27.044	27.814	-0.32157					21	14	2	0	0	0	0.079351	1	9931	9931		78.149	12.914	1	4119700			11533	528	6724	6766	11111	11111					-0.04583909613177184
GATGGGAG	8	Unmodified	_GATGGGAG_					0	0	0			REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	547.24560546875	1	547.247066	546.239789	0.44261	0.00024222	1.5491	0.00084773	1.9917	0.0010899	547.2453660784729	33.709	0.20723	33.419	33.304	33.511	-0.29013					5	3	2	0	0	0	0.86388	1	12392	12392		2.8892	0	1	3390800	+		11534	14598	6725	6767	11112	11112					-0.051480949102824525
GATSGTLLCPP	11	Unmodified	_GATSGTLLCPP_					0	0	0			REV__PEAR1|p.G784Afs*136|1|0.49|ENSG00000187800|chr1:156912905-156912905|A/-|frameshift_variant	REV__PEAR1|p.G784Afs*136|1|0.49|ENSG00000187800|chr1:156912905-156912905|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	508.757568359375	2	508.757692	1015.50083	0.28118	0.00014305	0.33878	0.00017236	0.61996	0.00031541	508.7573895317717	24.907	0.83348	24.823	24.393	25.226	-0.083694					29	15	3	0	0	0	0.71887	1	8798	8798		14.838	2.3067	1	5587100	+		11535	17405	6726	6768	11113	11113					-0.00629896045404621
GATSPLGVHPS	11	Unmodified	_GATSPLGVHPS_					0	0	0		ZEB2|p.F904Ifs*47|1|0.04|ENSG00000169554|chr2:144398477-144398478|-/CAAGGAT|frameshift_variant;nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2	ZEB2|p.F904Ifs*47|1|0.04|ENSG00000169554|chr2:144398477-144398478|-/CAAGGAT|frameshift_variant	ZEB2|p.F904Ifs*47|1|0.04|ENSG00000169554|chr2:144398477-144398478|-/CAAGGAT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	511.75006103515625	2	511.766906	1021.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.178	1	22.793	22.293	23.293	-0.3852								0	0	0	0.9387	1	8248	8248		12.241	2.0573	1				11536	5079	6727	6769	11114	11114					0.009359819208043518
GATSRPPAAQ	10	Unmodified	_GATSRPPAAQ_					0	0	0		nc|ENSG00000139266|Q86YJ5-2|MARCHF9;ENSG00000139266|ENST00000266643|MARCHF9	nc|ENSG00000139266|Q86YJ5-2|MARCHF9	nc|ENSG00000139266|Q86YJ5-2|MARCHF9	MULTI-MSMS	HCT116MG_D190212_S3	3	478.2517395019531	2	478.251423	954.488293	0.17829	8.5268E-05	1.9284	0.00092228	2.1067	0.0010075	478.25178599370105	21.576	0.47634	21.594	21.271	21.747	0.018446					12	8	2	0	0	0	0.50387	1	7543	7543		34.932	0.53034	1	3311300			11537	3617	6728	6770	11115	11115					0.00922828606553594
GATTLKNF	8	Unmodified	_GATTLKNF_					0	0	0		ADAMTS20|p.E786Kfs*86|1|0.33|ENSG00000173157|chr12:43440005-43440005|T/-|frameshift_variant;nc|ENSG00000173157|P59510-2|ADAMTS20;ADAMTS20|p.G1673Wfs*18|1|0.26|ENSG00000173157|chr12:43376632-43376633|-/A|frameshift_variant;ADAMTS20|p.N1722Tfs*17|1|0.48|ENSG00000173157|chr12:43376291-43376291|T/-|frameshift_variant;nc|ENSG00000173157|P59510|ADAMTS20;ENSG00000173157|ENST00000389420|ADAMTS20	ADAMTS20|p.E786Kfs*86|1|0.33|ENSG00000173157|chr12:43440005-43440005|T/-|frameshift_variant	ADAMTS20|p.E786Kfs*86|1|0.33|ENSG00000173157|chr12:43440005-43440005|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	426.2331848144531	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.313	1	22.928	22.428	23.428	-0.3852								0	0	0	0.8837	1	8302	8302		14.582	2.9414	1				11538	47	6729	6771	11116	11116					0.023658268346594014
GATTSKLR	8	Unmodified	_GATTSKLR_					0	0	0		NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;NAV3|p.K1745Sfs*14|1|0.13|ENSG00000067798|chr12:78177244-78177244|C/-|frameshift_variant;NAV3|p.L1995Sfs*5|1|0.05|ENSG00000067798|chr12:78188704-78188705|-/T|frameshift_variant	NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant	NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	417.2455139160156	2	417.245609	832.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.985	1	19.985	19.485	20.485	0								0	0	0	0.8837	1	6961	6961		14.582	2.0501	1				11539	1191	6730	6772	11117	11117					0.05372631583236398
GATVRLEEY	9	Unmodified	_GATVRLEEY_					0	0	0			REV__ENSG00000161850|ENST00000257974|KRT82	REV__ENSG00000161850|ENST00000257974|KRT82	MSMS	HCT116MG_D190212_S2	2	519.138916015625	2	519.266739	1036.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.74	1	16.399	15.899	16.899	-0.34183								0	0	0	0.76781	1	5653	5653		8.5933	0	1		+	+	11540	10279	6731	6773	11118	11118					0.002125622009543804
GAVEPHKAP	9	Unmodified	_GAVEPHKAP_					0	0	0		ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	ENSG00000110719|ENST00000265686|TCIRG1	MSMS	HCT116MG_D190212_S3	3	453.2438659667969	2	453.245609	904.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.171	1	25.065	24.565	25.565	-0.10618								0	0	0	0.71969	1	8974	8974		18.135	1.1927	1				11541	2257	6732	6774	11119	11119					0.02060631583231043
GAVEWLYPAGA	11	Unmodified	_GAVEWLYPAGA_					0	0	0		ENSG00000103260|ENST00000568223|METRN	ENSG00000103260|ENST00000568223|METRN	ENSG00000103260|ENST00000568223|METRN	MULTI-SECPEP	HCT116MG_D190212_S1	1	567.7506713867188	2	567.284931	1132.55531	0.43929	0.0002492	-0.22929	-0.00013007	0.21	0.00011913	567.284773563791	21.11	0.2161	21.11	20.956	21.173	0					5	3	2	0	0	0	0.31923	1	7429	7429		24.021	6.9077	1	4773500			11542	1886	6733	6775	11120	11120					-0.005665609023481011
GAVGSPGPA	9	Unmodified	_GAVGSPGPA_					0	0	0		CON__P04258	CON__P04258	CON__P04258	MULTI-MSMS	HCT116MG_D190212_S4	4	712.362548828125	1	712.36243	711.355153	0.79492	0.00056627	0.11203	7.9807E-05	0.90695	0.00064608	712.362301131239	21.151	0.31119	20.941	20.708	21.019	-0.20959					8	5	2	0	0	0	0.058138	1	7287	7287		70.716	10.326	1	2407300		+	11543	557	6734	6776	11121	11121					-0.012069907792920276
GAVKGMWGAQ	10	Unmodified	_GAVKGMWGAQ_					0	0	0			REV__ENST00000253699.7_1_3:15115189-15115240:-|nuORF	REV__ENST00000253699.7_1_3:15115189-15115240:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	502.2508239746094	2	502.752744	1003.49094	0.15135	7.609E-05	-0.29972	-0.00015068	-0.14837	-7.4592E-05	502.7525142465906	38.467	0.13892	38.085	38.003	38.142	-0.38163					4	2	2	0	0	0	0.3029	1	14115	14115		3.5965	3.5965	1	2869000	+		11544	14595	6735	6777	11122	11122					-0.010670392601241474
GAVMFGREFCY	11	Unmodified	_GAVMFGREFCY_					0	0	0		SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant;nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4;SLC45A4|p.R345Afs*34|1|0.27|ENSG00000022567|chr8:141218607-141218607|G/-|frameshift_variant;SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant;SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	640.2861328125	2	640.283551	1278.55255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.622	1	42.552	42.052	43.052	-0.069984								0	0	0	0.94924	1	16138	16138		6.7232	0.51738	1				11545	945;18166	6736	6778	11123	11123					-0.07558475623136474
GAVPPAKP	8	Unmodified	_GAVPPAKP_					0	0	0		ENST00000482878.5_1_16:772680-772797:-|nuORF;ENST00000481804.5_1_16:772680-773505:-|nuORF;ENST00000485091.5_1_16:772680-775160:-|nuORF;ENSG00000162004|ENST00000345165|CCDC78	ENST00000482878.5_1_16:772680-772797:-|nuORF	ENST00000482878.5_1_16:772680-772797:-|nuORF	MSMS	HCT116MG_D190212_S3	3	368.7200012207031	2	368.721239	735.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.394	1	46.082	45.582	46.582	-0.31237								0	0	0	0.8837	1	17394	17394		0.79363	0	1				11546	4504	6737	6779	11124	11124					0.049627630141344525
GAVVTTTQRQV	11	Unmodified	_GAVVTTTQRQV_					0	0	0			REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF	REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	387.55328369140625	3	387.219172	1158.63569	0.030324	1.1742E-05	-0.61522	-0.00023823	-0.5849	-0.00022648	387.553314689755	20.692	0.36787	20.312	20.13	20.498	-0.37949					14	5	4	0	0	0	0.71289	2	7249	7249;7289		17.049	7.9454	1	55276000	+		11547	10492	6738	6780	11125;11126	11125					0.0627130042068984
GAVVTTTQRQV	11	Unmodified	_GAVVTTTQRQV_					0	0	0			REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF	REV__ENST00000511153.5_3_4:16004971-16040619:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	387.55328369140625	3	387.219172	1158.63569	0.030324	1.1742E-05	-0.61522	-0.00023823	-0.5849	-0.00022648	387.553314689755	20.692	0.36787	20.312	20.13	20.498	-0.37949					14	5	4	0	0	0	0.34585	1	7249	7249		17.049	7.5046	1	55276000	+		11548	10492	6738	6780	11127	11127					0.0627130042068984
GAYNFMKASE	10	Unmodified	_GAYNFMKASE_					0	0	0			REV__ENSG00000143418|ENST00000368954|CERS2	REV__ENSG00000143418|ENST00000368954|CERS2	MULTI-SECPEP	HCT116MG_D190212_S1	1	558.7517700195312	2	559.252774	1116.491	0.4214	0.00023567	0.24704	0.00013816	0.66845	0.00037383	559.2527855963265	22.49	0.31296	22.49	22.324	22.637	0					6	5	2	0	0	0	0.29442	1	7967	7967		10.074	4.3421	1	1855400	+		11549	12390	6739	6781	11128	11128					-0.06259084050793717
GCAGCFCG	8	Unmodified	_GCAGCFCG_					0	0	0			REV__ENST00000291672.5_1_21:47602757-47602988:-|nuORF	REV__ENST00000291672.5_1_21:47602757-47602988:-|nuORF	MSMS	HCT116MG_D190212_S1	1	359.5208435058594	2	359.111295	716.208037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.024	1	21.024	20.524	21.524	0								0	0	0	0.8837	1	7377	7377		0.79363	0.79363	1		+		11550	14749	6740	6782	11129	11129					-0.16141870251738055
GCCSSGCCSS	10	Unmodified	_GCCSSGCCSS_					0	0	0			REV__ENSG00000186860|ENST00000334202|KRTAP17-1	REV__ENSG00000186860|ENST00000334202|KRTAP17-1	MSMS	HCT116MG_D190212_S1	1	446.72918701171875	2	447.116448	892.218344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.456	1	45.456	44.956	45.956	0								0	0	0	0.97116	1	17223	17223		0	0	1		+		11551	13900	6741	6783	11130	11130					-0.23207675379467219
GCDMDCPCNCD	11	Unmodified	_GCDMDCPCNCD_					0	0	0			REV__nc|ENSG00000135272|Q9P1T7-1|MDFIC	REV__nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S2	2	588.1502075195312	2	588.150162	1174.28577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.597	1	51.413	50.913	51.913	-0.18369								0	0	0	0.96208	1	19800	19800		0	0	1		+		11552	17135	6742	6784	11131	11131					-0.29440013230851036
GCDVDFDF	8	Unmodified	_GCDVDFDF_					0	0	0		nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2;ENST00000468285.1_1_10:76973815-76980729:+|nuORF	nc|ENSG00000165637|P45880-2|VDAC2	nc|ENSG00000165637|P45880-2|VDAC2	MSMS	HCT116MG_D190212_S2	2	459.172119140625	2	459.170918	916.327284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.613	1	13.309	12.809	13.809	-0.30453								0	0	0	0.8837	1	4453	4453		0.69038	0.69038	1				11553	4786	6743	6785	11132	11132					-0.1342268182169164
GCEGPADY	8	Unmodified	_GCEGPADY_					0	0	0		ENST00000377990.6_2_2:65299459-65299522:+|nuORF	ENST00000377990.6_2_2:65299459-65299522:+|nuORF	ENST00000377990.6_2_2:65299459-65299522:+|nuORF	MSMS	HCT116MG_D190212_S1	1	406.1500244140625	2	406.149986	810.285419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.413	1	41.413	40.913	41.913	0								0	0	0	0.8837	1	15593	15593		0.79363	0	1				11554	7535	6744	6786	11133	11133					-0.12731237510217852
GCGQCYAA	8	Unmodified	_GCGQCYAA_					0	0	0			REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	773.2742309570312	1	772.275271	771.267995	0.68135	0.00052619	-3.0806	-0.002379	-2.3992	-0.0018528	772.2738919386092	10.077	0.075597	10.11	10.084	10.159	0.032559					10	7	2	0	0	0	0.88026	2	3048	3048;3054		0	0	1	249340	+		11555	15727	6745	6787	11134;11135	11134					-0.12678856316881593
GCPLGVPV	8	Unmodified	_GCPLGVPV_					0	0	0			REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	MSMS	HCT116MG_D190212_S1	1	371.2021484375	2	371.201825	740.389096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.489	1	58.489	57.989	58.989	0								0	0	0	0.8837	1	22533	22533		6.3541	0	1		+		11556	16013	6746	6788	11136	11136					0.00851714388113578
GDAPSPEEKLH	11	Unmodified	_GDAPSPEEKLH_					0	0	0		ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	590.2830200195312	2	590.28566	1178.55677	0.49723	0.00029351	-0.43278	-0.00025546	0.06445	3.8044E-05	590.2853758367849	18.304	0.7289	18.38	17.841	18.57	0.076334					34	13	3	0	0	0	0.69138	1	6091	6091		24.991	1.2012	1	5983100			11557	3296	6747	6789	11137	11137					-0.025369716042405344
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S1	1	392.1127014160156	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.485	1	63.485	62.985	63.985	0								0	0	0	0.96208	1	24525	24525		0	0	1				11558	8174	6748	6790	11138	11138					-0.2627139540609278
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S1	1	392.1128234863281	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.002	1	64.002	63.502	64.502	0								0	0	0	0.96208	1	24711	24711		0	0	1				11559	8174	6748	6790	11139	11139					-0.2627139540609278
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S1	1	392.1128234863281	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.509	1	64.509	64.009	65.009	0								0	0	0	0.96208	1	24880	24880		0	0	1				11560	8174	6748	6790	11140	11140					-0.2627139540609278
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S2	2	392.1128234863281	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.95036	1	0.9441	0.4441	1.4441	-0.00626								0	0	0	0.96208	1	311	311		0	0	1				11561	8174	6748	6790	11141	11141					-0.2627139540609278
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S2	2	392.1041564941406	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3012	1	1.2949	0.79495	1.7949	-0.0062599								0	0	0	0.96208	1	425	425		0	0	1				11562	8174	6748	6790	11142	11142					-0.2627139540609278
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S2	2	392.1125183105469	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0403	1	6.8431	6.3431	7.3431	-0.19725								0	0	0	0.96208	1	2208	2208		0	0	1				11563	8174	6748	6790	11143	11143					-0.2627139540609278
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S2	2	392.1126403808594	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6598	1	8.4158	7.9158	8.9158	-0.24401								0	0	0	0.96208	1	2704	2704		0	0	1				11564	8174	6748	6790	11144	11144					-0.2627139540609278
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S2	2	392.1128234863281	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.415	1	64.299	63.799	64.799	-0.11585								0	0	0	0.96208	1	24928	24928		0	0	1				11565	8174	6748	6790	11145	11145					-0.2627139540609278
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S2	2	392.1126708984375	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.998	1	64.876	64.376	65.376	-0.12233								0	0	0	0.96208	1	25110	25110		0	0	1				11566	8174	6748	6790	11146	11146					-0.2627139540609278
GDCPCFCSCHC	11	Unmodified	_GDCPCFCSCHC_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MSMS	HCT116MG_D190212_S3	3	392.1130676269531	3	392.112947	1173.31701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.005	1	62.782	62.282	63.282	-0.22315								0	0	0	0.96208	1	24065	24065		0	0	1				11567	8174	6748	6790	11147	11147					-0.2627139540609278
GDDCCCVWCR	10	Unmodified	_GDDCCCVWCR_					0	0	0			REV__ENST00000457725.1_1_11:64163115-64163241:-|nuORF	REV__ENST00000457725.1_1_11:64163115-64163241:-|nuORF	MSMS	HCT116MG_D190212_S2	2	387.1328125	3	387.131107	1158.37149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9522	1	3.8631	3.3631	4.3631	-0.089082								0	0	0	0.97045	1	1254	1254		0.15932	0.01943	1		+		11568	15763	6749	6791	11148	11148					-0.2013606026303023
GDDCCCVWCR	10	Unmodified	_GDDCCCVWCR_					0	0	0			REV__ENST00000457725.1_1_11:64163115-64163241:-|nuORF	REV__ENST00000457725.1_1_11:64163115-64163241:-|nuORF	MSMS	HCT116MG_D190212_S2	2	387.1318359375	3	387.131107	1158.37149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8683	1	4.7496	4.2496	5.2496	-0.11871								0	0	0	0.97045	1	1542	1542		0.15932	0.15932	1		+		11569	15763	6749	6791	11149	11149					-0.2013606026303023
GDDCCCVWCR	10	Unmodified	_GDDCCCVWCR_					0	0	0			REV__ENST00000457725.1_1_11:64163115-64163241:-|nuORF	REV__ENST00000457725.1_1_11:64163115-64163241:-|nuORF	MSMS	HCT116MG_D190212_S2	2	387.1324462890625	3	387.131107	1158.37149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1146	1	8.8706	8.3706	9.3706	-0.24401								0	0	0	0.97045	1	2848	2848		0.15932	0.15932	1		+		11570	15763	6749	6791	11150	11150					-0.2013606026303023
GDDDEDDECDG	11	Unmodified	_GDDDEDDECDG_					0	0	0			REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	MSMS	HCT116MG_D190212_S1	1	395.4439697265625	3	395.443783	1183.30952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.405	1	14.405	13.905	14.905	0								0	0	0	0.96208	1	4712	4712		0	0	1		+		11571	13427	6750	6792	11151	11151					-0.27480138395821996
GDDEDEKVKKK	11	Unmodified	_GDDEDEKVKKK_					0	0	0			REV__ENSG00000198842|ENST00000361200|STYXL2	REV__ENSG00000198842|ENST00000361200|STYXL2	MSMS	HCT116MG_D190212_S4	4	430.888671875	3	430.88938	1289.64631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.75947	1	0.49491	-0.0050906	0.99491	-0.26456								0	0	0	0.96192	1	243	243		0.08335	0	1		+		11572	14156	6751	6793	11152	11152					0.01307238284448431
GDDLDRAIEEF	11	Unmodified	_GDDLDRAIEEF_					0	0	0		ENST00000481749.5_1_3:138374233-138426144:-|nuORF;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant;ENSG00000051382|ENST00000674063|PIK3CB	ENST00000481749.5_1_3:138374233-138426144:-|nuORF	ENST00000481749.5_1_3:138374233-138426144:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	640.294189453125	2	640.293682	1278.57281	0.395	0.00025292	0.24583	0.00015741	0.64084	0.00041032	640.2938095187354	31.496	1.3763	31.125	30.218	31.595	-0.37026					76	30	3	0	0	0	0.73156	1	11602	11602		10.151	1.4052	1	16837000			11573	1057	6752	6794	11153	11153					-0.055333101579890354
GDGNILALAV	10	Unmodified	_GDGNILALAV_					0	0	0		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-SECPEP	HCT116MG_D190212_S2	2	942.5241088867188	1	942.525473	941.518196	0.56684	0.00053426	-1.0975	-0.0010344	-0.53066	-0.00050016	942.5245233675336	53.851	0.30925	53.661	53.532	53.842	-0.1894					6	5	2	0	0	0	0.23765	1	20757	20757		34.932	0	1	11926000			11574	3938	6753	6795	11154	11154					0.04509767551883215
GDGQIEDKETI	11	Unmodified	_GDGQIEDKETI_					0	0	0		nc|ENSG00000160633|Q15424-2|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	MULTI-MSMS	HCT116MG_D190212_S2	2	602.7901000976562	2	602.788232	1203.56191	0.46928	0.00028288	1.9962	0.0012033	2.4655	0.0014861	602.7898878694186	37.872	0.25736	37.779	37.651	37.908	-0.09301					7	4	2	0	0	0	0.68491	1	14244	14244		26.021	2.0001	1	17665000			11575	9516	6754	6796	11155	11155					-0.03172712532295918
GDHGYGCC	8	Unmodified	_GDHGYGCC_					0	0	0		KRTAP6-2|p.E21K|1|0.31|ENSG00000186930|chr21:30598814-30598814|C/T|missense_variant;ENSG00000186930|ENST00000334897|KRTAP6-2	KRTAP6-2|p.E21K|1|0.31|ENSG00000186930|chr21:30598814-30598814|C/T|missense_variant	KRTAP6-2|p.E21K|1|0.31|ENSG00000186930|chr21:30598814-30598814|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	406.1287536621094	2	406.128531	810.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.007	1	62.878	62.378	63.378	-0.12924								0	0	0	0.8837	1	24428	24428		0	0	1				11576	5919	6755	6797	11156	11156					-0.1702033083928427
GDIAGPSLPPP	11	Unmodified	_GDIAGPSLPPP_					0	0	0			REV__ENSG00000138496|ENST00000682323|PARP9	REV__ENSG00000138496|ENST00000682323|PARP9	MSMS	HCT116MG_D190212_S3	3	510.7727966308594	2	510.771657	1019.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.09	1	37.789	37.289	38.289	-0.30137								0	0	0	0.8787	1	14098	14098		22.736	5.6234	1		+		11577	12229	6756	6798	11157	11157					0.019777502063448082
GDIAVHGVQPG	11	Unmodified	_GDIAVHGVQPG_					0	0	0		ENSG00000189001|ENST00000452271|SBSN	ENSG00000189001|ENST00000452271|SBSN	ENSG00000189001|ENST00000452271|SBSN	MULTI-MSMS	HCT116MG_D190212_S4	4	525.2725219726562	2	525.272355	1048.53016	0.40642	0.00021348	-0.0080604	-4.2339E-06	0.39836	0.00020925	525.272374214589	20.402	1.1949	20.201	19.729	20.923	-0.20133					28	22	2	0	0	0	0.69749	1	7195	7195		22.736	1.1993	1	2454700			11578	6013	6757	6799	11158	11158					0.00783384295095857
GDIEGNFSGPV	11	Unmodified	_GDIEGNFSGPV_					0	0	0		sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1;sp|F5HB41|US30_HCMVMUncharacterizedproteinUS30OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	546.25390625	2	546.253828	1090.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.489	1	32.11	31.61	32.61	-0.37924								0	0	0	0.90489	1	11835	11835		19.362	2.249	1				11579	18192	6758	6800	11159	11159					-0.048523320413323745
GDKLLGRMAL	10	Oxidation (M)	_GDKLLGRM(Oxidation (M))AL_		GDKLLGRM(1)AL		GDKLLGRM(66)AL	0	0	1			REV__MAGIX|p.V153M|1|0.16|ENSG00000269313|chrX:49165040-49165040|G/A|missense_variant	REV__MAGIX|p.V153M|1|0.16|ENSG00000269313|chrX:49165040-49165040|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.3086547851562	2	545.307884	1088.60121	0.58134	0.00031701	0.4029	0.0002197	0.98423	0.00053671	545.308273801212	31.215	0.2574	30.948	30.768	31.025	-0.26704					7	4	2	0	0	0	0.13861	1	11514	11514		66.457	7.7779	1	20478000	+		11580	17000	6759	6801	11160	11160		164			0.060457610082494284
GDLAHKSHM	9	Unmodified	_GDLAHKSHM_					0	0	0		nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;RC3H2|p.T1132Qfs*5|1|0.29|ENSG00000056586|chr9:122849809-122849809|T/-|frameshift_variant;ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-2|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2;RC3H2|p.F582Mfs*6|1|0.08|ENSG00000056586|chr9:122860022-122860023|-/AAAAGAAACAT|frameshift_variant	nc|ENSG00000056586|Q9HBD1-6|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	MULTI-MSMS	HCT116MG_D190212_S3	3	498.24444580078125	2	498.240001	994.465449	0.45308	0.00022574	0.23196	0.00011557	0.68504	0.00034132	498.2401171470964	24.763	0.729	24.679	24.549	25.278	-0.083694					17	13	2	0	0	0	0.41514	1	8934	8934		21.747	1.293	1	10533000			11581	1088	6760	6802	11161	11161					-0.032005137825422025
GDLQSIETYQR	11	Unmodified	_GDLQSIETYQR_					0	0	0			REV__nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	REV__nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-MSMS	HCT116MG_D190212_S4	4	655.3231811523438	2	655.322773	1308.63099	0.57335	0.00037573	0.22627	0.00014828	0.79962	0.00052401	655.8244187438168	28.109	0.57187	27.778	27.44	28.012	-0.33138					14	10	2	0	0	0	0.74191	1	10106	10106		11.495	5.7629	1	3526300	+		11582	11510	6761	6803	11162	11162					-0.010976285127071606
GDLRILQTPP	10	Unmodified	_GDLRILQTPP_					0	0	0		ENST00000573525.1_1_16:2962029-2979726:+|nuORF	ENST00000573525.1_1_16:2962029-2979726:+|nuORF	ENST00000573525.1_1_16:2962029-2979726:+|nuORF	MSMS	HCT116MG_D190212_S2	2	555.3179931640625	2	555.319306	1108.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.185	1	51.007	50.507	51.507	-0.17868								0	0	0	0.88261	1	19632	19632		18.146	1.0335	1				11583	8908	6762	6804	11163	11163					0.07409103397367289
GDNEGSDDD	9	Unmodified	_GDNEGSDDD_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MSMS	HCT116MG_D190212_S1	1	462.1466369628906	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.012562	1	0.012562	-0.48744	0.51256	0								0	0	0	0.77012	1	4	4		0.45834	0.45834	1				11584	5761	6763	6805	11164	11164					-0.18543503927901384
GDNEGSDDD	9	Unmodified	_GDNEGSDDD_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MSMS	HCT116MG_D190212_S3	3	462.1466369628906	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.781	1	43.475	42.975	43.975	-0.30616								0	0	0	0.77012	1	16347	16347		0.45834	0.45834	1				11585	5761	6763	6805	11165	11165					-0.18543503927901384
GDPSPQGQPQ	10	Unmodified	_GDPSPQGQPQ_					0	0	0		ENST00000569969.5_2_16:28995606-28996332:+|nuORF	ENST00000569969.5_2_16:28995606-28996332:+|nuORF	ENST00000569969.5_2_16:28995606-28996332:+|nuORF	MSMS	HCT116MG_D190212_S3	3	505.73089599609375	2	505.73052	1009.44649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.513	1	18.589	18.089	19.089	0.076334								0	0	0	0.82154	1	6292	6292		26.021	0.62139	1				11586	8884	6764	6806	11166	11166					-0.05785771872604073
GDQGGGQT	8	Unmodified	_GDQGGGQT_					0	0	0		COL4A4|p.A1615T|1|0.41|ENSG00000081052|chr2:227007555-227007555|C/T|missense_variant	COL4A4|p.A1615T|1|0.41|ENSG00000081052|chr2:227007555-227007555|C/T|missense_variant	COL4A4|p.A1615T|1|0.41|ENSG00000081052|chr2:227007555-227007555|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	360.1499328613281	2	360.151375	718.288196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.462	1	13.3	12.8	13.8	-0.16233								0	0	0	0.8837	1	4222	4222		0.79363	0	1				11587	523	6765	6807	11167	11167					-0.0822164606104252
GDRIFFVSA	9	Unmodified	_GDRIFFVSA_					0	0	0		ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-MSMS	HCT116MG_D190212_S2	2	506.26641845703125	2	506.266542	1010.51853	0.41379	0.00020949	-0.59686	-0.00030217	-0.18306	-9.2679E-05	506.2659094689053	50.343	0.47087	50.172	49.985	50.456	-0.17191					14	8	3	0	0	0	0.12421	1	19294	19294		53.404	22.136	1	59736000			11588	2528	6766	6808	11168	11168					0.01369187271757255
GDRIFFVSA	9	Unmodified	_GDRIFFVSA_					0	0	0		ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	506.266542	1010.51853	0.22096	0.00011186	-0.6107	-0.00030918	-0.38974	-0.00019731	506.26620973104673	50.168	0.15481	50.168	50.059	50.214	0	-0.0019441	-7.7463E-07	NaN	53.404	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10071000			11589	2528	6766	6808							0.01369187271757255
GDSGTIIPPPP	11	Unmodified	_GDSGTIIPPPP_					0	0	0		DIAPH1|p.P703Hfs*65|2|0.51|ENSG00000131504|chr5:141573742-141573742|G/-|frameshift_variant;DIAPH1|p.P677Hfs*91|1|0.28|ENSG00000131504|chr5:141573820-141573820|G/-|frameshift_variant;nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	DIAPH1|p.P703Hfs*65|2|0.51|ENSG00000131504|chr5:141573742-141573742|G/-|frameshift_variant	DIAPH1|p.P703Hfs*65|2|0.51|ENSG00000131504|chr5:141573742-141573742|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	525.742431640625	2	525.776939	1049.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.411	1	25.041	24.541	25.541	-0.37074								0	0	0	0.90571	1	9150	9150		19.257	1.1106	1				11590	673	6767	6809	11169	11169					0.016537328607682866
GDSRPTSPPP	10	Unmodified	_GDSRPTSPPP_					0	0	0			REV__ENST00000445323.6_2_X:149931146-149931284:+|nuORF	REV__ENST00000445323.6_2_X:149931146-149931284:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	505.2281188964844	2	505.748713	1009.48287	0.59994	0.00030342	-0.21276	-0.0001076	0.38718	0.00019582	505.7485335261675	22.41	0.20717	22.025	21.895	22.103	-0.3852					5	3	2	0	0	0	0.30027	1	7903	7903		16.942	13.346	1	13028000	+		11591	15667	6768	6810	11170	11170					-0.021488949758918352
GDTLVEIY	8	Unmodified	_GDTLVEIY_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	HCT116MG_D190212_S1	1	909.4575805664062	1	909.45639	908.449113	0.64011	0.00058215	0.57178	0.00052001	1.2119	0.0011022	909.4568224947093	42.613	0.25625	42.613	42.486	42.743	0					7	4	2	0	0	0	0.25164	1	16085	16085		63.563	0	1	20948000	+		11592	11257	6769	6811	11171	11171					-0.008773164676540546
GDTLVEIY	8	Unmodified	_GDTLVEIY_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	909.45639	908.449113	0.64011	0.00058215	0.57178	0.00052001	1.2119	0.0011022	909.4568224947093	42.613	0.25625	42.613	42.486	42.743	0	0.00093751	0.00026469	NaN	63.563	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20948000	+		11593	11257	6769	6811							-0.008773164676540546
GEAAAGKY	8	Unmodified	_GEAAAGKY_					0	0	0			REV__nc|ENSG00000126351|P10827|THRA	REV__nc|ENSG00000126351|P10827|THRA	MSMS	HCT116MG_D190212_S1	1	383.68988037109375	2	383.690136	765.365718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.964	1	25.964	25.464	26.464	0								0	0	0	0.8837	1	9361	9361		13.508	3.3245	1		+		11594	17119	6770	6812	11172	11172					-0.026350081248665447
GEAAGSPVP	9	Unmodified	_GEAAGSPVP_					0	0	0		ENST00000508390.1_1_3:131245302-131245881:+|nuORF;nc|ENSG00000126453|Q9HB09-2|BCL2L12;nc|ENSG00000126453|Q9HB09-3|BCL2L12;ENSG00000126453|ENST00000246784|BCL2L12	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	784.3845825195312	1	784.383559	783.376283	1.1146	0.00087425	-0.11258	-8.8303E-05	1.002	0.00078595	784.3833285936034	27.404	0.72196	27.062	26.829	27.551	-0.34201					24	13	2	0	0	0	0.071351	1	9959	9959		64.236	3.8468	1	25050000			11595	8477	6771	6813	11173	11173					-0.024070254704270155
GEAEAFAIGA	10	Unmodified	_GEAEAFAIGA_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MULTI-MSMS	HCT116MG_D190212_S1	1	935.448486328125	1	935.446888	934.439611	0.78799	0.00073712	0.40013	0.0003743	1.1881	0.0011114	935.4471682641973	44.437	0.31832	44.437	44.25	44.568	0					9	5	2	0	0	0	0.095673	1	16819	16819		74.929	6.8483	1	35091000			11596	3471	6772	6814	11174	11174					-0.030230847531811378
GEAEAFAIGA	10	Unmodified	_GEAEAFAIGA_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MULTI-MSMS	HCT116MG_D190212_S2	2	935.447021484375	1	935.446888	934.439611	0.79925	0.00074765	0.31771	0.0002972	1.117	0.0010449	935.4469774318067	44.487	0.47103	44.402	44.22	44.691	-0.084797					19	8	3	0	0	0	0.037761	1	16881	16881		96.285	28.204	1	165080000			11597	3471	6772	6814	11175	11175					-0.030230847531811378
GEAEAFAIGA	10	Unmodified	_GEAEAFAIGA_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MULTI-MSMS	HCT116MG_D190212_S2	2	468.2271728515625	2	468.227082	934.439611	0.31466	0.00014733	0.23645	0.00011071	0.55111	0.00025805	468.2270902417883	44.487	0.20753	44.402	44.274	44.482	-0.084797					6	3	2	0	0	0	0.11491	1	16921	16921		71.134	27.275	1	25827000			11598	3471	6772	6814	11176	11176					-0.030230847531811378
GEAEAFAIGA	10	Unmodified	_GEAEAFAIGA_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MULTI-MSMS	HCT116MG_D190212_S3	3	935.4472045898438	1	935.446888	934.439611	0.9904	0.00092647	-0.26897	-0.00025161	0.72143	0.00067486	935.4463510509966	44.717	0.20633	44.407	44.325	44.532	-0.30927					12	6	2	0	0	0	0.20843	1	16713	16713		58.679	3.9053	1	20188000			11599	3471	6772	6814	11177	11177					-0.030230847531811378
GEAEKWAIP	9	Unmodified	_GEAEKWAIP_					0	0	0		ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	MSMS	HCT116MG_D190212_S1	1	500.75897216796875	2	500.758549	999.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.746	1	44.746	44.246	45.246	0								0	0	0	0.094105	1	16936	16936		57.722	13.95	1				11600	5992	6773	6815	11178	11178					0.002774810348455503
GEAEKWAIP	9	Unmodified	_GEAEKWAIP_					0	0	0		ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	HCT116MG_D190212_S2	2	501.29168701171875	2	500.758549	999.502546	0.59437	0.00029764	0.075373	3.7744E-05	0.66975	0.00033538	500.75851322944857	44.581	1.1958	44.497	44.274	45.47	-0.084797					54	22	3	0	0	0	0.053544	4	17140	16922;17013;17140;17150		72.968	24.174	1	45391000			11601	5992	6773	6815	11179;11180;11181;11182	11181					0.002774810348455503
GEAEKWAIP	9	Unmodified	_GEAEKWAIP_					0	0	0		ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	HCT116MG_D190212_S3	3	500.7590026855469	2	500.758549	999.502546	0.59729	0.0002991	-0.22013	-0.00011023	0.37716	0.00018886	500.7584811557208	44.906	1.016	44.597	44.394	45.41	-0.30927					23	20	2	0	0	0	0.12205	1	16838	16838		53.833	17.706	1	4504500			11602	5992	6773	6815	11183	11183					0.002774810348455503
GEAGPELPRA	10	Unmodified	_GEAGPELPRA_					0	0	0		ENST00000568925.1_1_16:77246444-77246825:+|nuORF;ENSG00000205078|ENST00000378644|SYCE1L	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	498.75927734375	2	498.759081	995.503609	0.63614	0.00031728	0.049597	2.4737E-05	0.68574	0.00034202	498.75896959542365	28.72	0.31491	28.72	28.588	28.903	0					8	5	2	0	0	0	0.26262	1	10503	10503		53.833	8.1332	1	7660400			11603	6365	6774	6816	11184	11184					0.005676954037653559
GEAGPELPRA	10	Unmodified	_GEAGPELPRA_					0	0	0		ENST00000568925.1_1_16:77246444-77246825:+|nuORF;ENSG00000205078|ENST00000378644|SYCE1L	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7594299316406	2	498.759081	995.503609	0.40934	0.00020416	-0.47484	-0.00023683	-0.065506	-3.2672E-05	498.75893238077697	29.153	0.358	28.837	28.657	29.015	-0.31613					10	6	2	0	0	0	0.086065	1	10675	10675		76.825	9.744	1	43968000			11604	6365	6774	6816	11185	11185					0.005676954037653559
GEAGPELPRA	10	Unmodified	_GEAGPELPRA_					0	0	0		ENST00000568925.1_1_16:77246444-77246825:+|nuORF;ENSG00000205078|ENST00000378644|SYCE1L	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	498.759081	995.503609	0.42537	0.00021216	-0.24343	-0.00012141	0.18194	9.0743E-05	498.7590468127309	29.304	0.36355	28.955	28.825	29.189	-0.34921	0.11744	-2.5244E-05	NaN	76.825	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3584900			11605	6365	6774	6816							0.005676954037653559
GEALWGINLDD	11	Unmodified	_GEALWGINLDD_					0	0	0			REV__ENST00000319928.7_1_1:47075162-47075330:-|nuORF	REV__ENST00000319928.7_1_1:47075162-47075330:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	601.78857421875	2	601.788035	1201.56152	0.62112	0.00037378	0.0036237	2.1807E-06	0.62474	0.00037596	601.7879908676964	33.416	0.8982	33.126	32.925	33.823	-0.29013					35	19	2	0	0	0	0.7259	1	12302	12302		12.241	0	1	6474200	+		11606	14882	6775	6817	11186	11186					-0.031200874614796703
GEAPAALEA	9	Unmodified	_GEAPAALEA_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	828.41064453125	1	828.409774	827.402498	0.72537	0.00060091	0.1049	8.6897E-05	0.83027	0.0006878	828.4097194019735	32.194	0.36446	31.916	31.786	32.15	-0.27841					9	6	2	0	0	0	0.11023	1	11825	11825		56.177	11.77	1	3962300			11607	741	6776	6818	11187	11187					-0.01810756298959859
GEAPPGTPP	9	Unmodified	_GEAPPGTPP_					0	0	0		ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	MULTI-MSMS	HCT116MG_D190212_S1	1	822.3987426757812	1	822.399209	821.391933	0.81785	0.0006726	0.19536	0.00016067	1.0132	0.00083327	822.3990729529335	23.618	1.2523	23.618	22.898	24.15	0					37	23	2	0	0	0	0.007119	2	8259	8259;8507		120.45	20.079	1	5827800			11608	3126	6777	6819	11188;11189	11188					-0.025907389533699643
GEAPPGTPP	9	Unmodified	_GEAPPGTPP_					0	0	0		ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	MULTI-MSMS	HCT116MG_D190212_S2	2	822.3997802734375	1	822.399209	821.391933	0.96166	0.00079087	0.019803	1.6286E-05	0.98146	0.00080715	822.3990678912537	23.852	1.6123	23.469	22.78	24.392	-0.38324					65	30	3	0	0	0	0.0054498	3	8590	8361;8590;8828		133.7	8.0774	1	35680000			11609	3126	6777	6819	11190;11191;11192	11191					-0.025907389533699643
GEAPPGTPP	9	Unmodified	_GEAPPGTPP_					0	0	0		ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	MULTI-MSMS	HCT116MG_D190212_S3	3	822.40087890625	1	822.399209	821.391933	0.8892	0.00073128	0.13144	0.0001081	1.0206	0.00083938	822.3992302486815	23.461	1.6146	23.422	22.927	24.541	-0.03968					53	30	2	0	0	0	0.007119	3	8156	8156;8390;8630		120.45	7.8572	1	10809000			11610	3126	6777	6819	11193;11194;11195	11193					-0.025907389533699643
GEAPPSAPP	9	Unmodified	_GEAPPSAPP_					0	0	0		ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	MSMS	HCT116MG_D190212_S2	2	411.7032775878906	2	411.703243	821.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.86	1	23.477	22.977	23.977	-0.38324								0	0	0	0.026974	1	8524	8524		85.357	0	1				11611	7285	6778	6820	11196	11196					-0.02590738953381333
GEAPPSAPP	9	Unmodified	_GEAPPSAPP_					0	0	0		ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	MSMS	HCT116MG_D190212_S2	2	411.7032470703125	2	411.703243	821.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.21	1	23.83	23.33	24.33	-0.38003								0	0	0	0.094981	1	8665	8665		57.471	0	1				11612	7285	6778	6820	11197	11197					-0.02590738953381333
GEAPPSAPP	9	Unmodified	_GEAPPSAPP_					0	0	0		ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	MSMS	HCT116MG_D190212_S3	3	411.8664245605469	2	411.703243	821.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.338	1	23.299	22.799	23.799	-0.03968								0	0	0	0.1044	1	8235	8235		54.774	0	1				11613	7285	6778	6820	11198	11198					-0.02590738953381333
GEAPPSAPP	9	Unmodified	_GEAPPSAPP_					0	0	0		ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	ENST00000354574.8_1_12:110434058-110434154:-|nuORF	MSMS	HCT116MG_D190212_S3	3	411.7034606933594	2	411.703243	821.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.808	1	23.746	23.246	24.246	-0.061449								0	0	0	0.094981	1	8424	8424		57.471	0	1				11614	7285	6778	6820	11199	11199					-0.02590738953381333
GEAPVRLAKS	10	Unmodified	_GEAPVRLAKS_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	HCT116MG_D190212_S4	4	514.8001098632812	2	514.298373	1026.58219	0.25341	0.00013033	0.012174	6.2613E-06	0.26558	0.00013659	514.2982963912965	52.466	0.83145	52.125	51.73	52.561	-0.34023					34	15	3	0	0	0	0.87239	1	19489	19489		5.2969	1.3525	1	9555500	+		11615	12625	6779	6821	11200	11200					0.0699654770885445
GEARPGPTA	9	Unmodified	_GEARPGPTA_					0	0	0		ENSG00000161011|ENST00000389805|SQSTM1;nc|ENSG00000161011|Q13501-2|SQSTM1;ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENSG00000161011|ENST00000389805|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	MULTI-MSMS	HCT116MG_D190212_S2	2	428.2195129394531	2	428.219591	854.42463	0.045251	1.9378E-05	-0.16876	-7.2266E-05	-0.12351	-5.2888E-05	428.2195779578295	17.692	0.36541	17.336	17.127	17.493	-0.35647					12	6	3	0	0	0	0.0060369	1	6053	6053		128.57	66.971	1	6234200			11616	4475	6780	6822	11201	11201					-0.00840531830533564
GEARPGPTA	9	Unmodified	_GEARPGPTA_					0	0	0		ENSG00000161011|ENST00000389805|SQSTM1;nc|ENSG00000161011|Q13501-2|SQSTM1;ENST00000466342.1_1_5:179250916-179260288:+|nuORF	ENSG00000161011|ENST00000389805|SQSTM1	ENSG00000161011|ENST00000389805|SQSTM1	MULTI-MSMS	HCT116MG_D190212_S3	3	428.2196044921875	2	428.219591	854.42463	0.0062721	2.6858E-06	0.30469	0.00013048	0.31097	0.00013316	428.2196407139012	16.718	0.3642	16.803	16.652	17.016	0.084467					12	6	3	0	0	0	0.022505	1	5586	5586		93.938	44.384	1	2460500			11617	4475	6780	6822	11202	11202					-0.00840531830533564
GEASKSQEMVH	11	Unmodified	_GEASKSQEMVH_					0	0	0		ENSG00000026508|ENST00000428726|CD44;nc|ENSG00000026508|P16070-5|CD44;nc|ENSG00000026508|P16070-7|CD44;nc|ENSG00000026508|P16070-3|CD44;nc|ENSG00000026508|P16070-4|CD44;nc|ENSG00000026508|P16070-6|CD44;nc|ENSG00000026508|P16070-17|CD44;nc|ENSG00000026508|P16070-16|CD44;nc|ENSG00000026508|P16070-8|CD44;nc|ENSG00000026508|P16070-10|CD44;nc|ENSG00000026508|P16070-11|CD44;nc|ENSG00000026508|P16070-13|CD44;nc|ENSG00000026508|P16070-14|CD44;nc|ENSG00000026508|P16070-12|CD44;nc|ENSG00000026508|P16070-18|CD44	ENSG00000026508|ENST00000428726|CD44	ENSG00000026508|ENST00000428726|CD44	MSMS	HCT116MG_D190212_S1	1	601.7774658203125	2	601.777145	1201.53974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.032	1	17.032	16.532	17.532	0								0	0	0	0.6882	1	5771	5771		39.213	7.9447	1				11618	957	6781	6823	11203	11203					-0.0529721548168709
GEASPPAPP	9	Unmodified	_GEASPPAPP_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MSMS	HCT116MG_D190212_S2	2	411.5171813964844	2	411.703243	821.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.475	1	23.091	22.591	23.591	-0.38421								0	0	0	0.50556	1	8368	8368		28.487	0	1				11619	5823	6782	6824	11204	11204					-0.02590738953381333
GEATPHDLWF	10	Unmodified	_GEATPHDLWF_					0	0	0			REV__ENST00000469381.1_1_16:85696561-85697128:+|nuORF	REV__ENST00000469381.1_1_16:85696561-85697128:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	586.7719116210938	2	586.772188	1171.52982	0.49947	0.00029308	-1.0553	-0.00061925	-0.55588	-0.00032617	586.7712575596643	19.951	0.36383	19.757	19.58	19.944	-0.19367					15	6	4	0	0	0	0.65652	1	6808	6808		24.021	7.8715	1	2678700	+		11620	15853	6783	6825	11205	11205					-0.04908035424773516
GEAVEKEQAP	10	Unmodified	_GEAVEKEQAP_					0	0	0			REV__ENST00000263620.3_19:974543-975197:+|nuORF	REV__ENST00000263620.3_19:974543-975197:+|nuORF	MSMS	HCT116MG_D190212_S4	4	529.2377319335938	2	529.261653	1056.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.949	1	16.783	16.283	17.283	-0.16664								0	0	0	0.88261	1	5587	5587		18.146	5.6148	1		+		11621	14655	6784	6826	11206	11206					-0.01724045524269968
GEDDPELFS	9	Unmodified	_GEDDPELFS_					0	0	0			REV__ENST00000537175.1_1_12:16552211-16552709:-|nuORF	REV__ENST00000537175.1_1_12:16552211-16552709:-|nuORF	MSMS	HCT116MG_D190212_S4	4	504.79571533203125	2	504.711462	1007.40837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.109	1	14.948	14.448	15.448	-0.16089								0	0	0	0.76973	1	4844	4844		1.8442	0.19162	1		+		11622	16349	6785	6827	11207	11207					-0.09503702577933382
GEEGAVAAV	9	Unmodified	_GEEGAVAAV_					0	0	0		ENST00000456860.6_2_11:123396356-123396845:+|nuORF	ENST00000456860.6_2_11:123396356-123396845:+|nuORF	ENST00000456860.6_2_11:123396356-123396845:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	802.3963623046875	1	802.394124	801.386848	1.125	0.00090268	0.23294	0.00018691	1.3579	0.0010896	802.3943783429977	26.049	0.20839	25.68	25.55	25.758	-0.36914					5	3	2	0	0	0	0.1037	1	9418	9418		57.471	0	1	9724400			11623	8027	6786	6828	11208	11208					-0.02179042815998855
GEFDGSVTF	9	Unmodified	_GEFDGSVTF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	HCT116MG_D190212_S1	1	958.4161376953125	1	958.415253	957.407977	0.66876	0.00064095	0.18181	0.00017425	0.85057	0.0008152	958.4152371914361	48.897	0.206	48.897	48.768	48.974	0					5	3	2	0	0	0	0.042978	1	18641	18641		78.149	23.376	1	16786000			11624	3719	6787	6829	11209	11209					-0.07243077507132512
GEFDGSVTF	9	Unmodified	_GEFDGSVTF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	HCT116MG_D190212_S2	2	958.4157104492188	1	958.415253	957.407977	0.59233	0.0005677	0.59315	0.00056848	1.1855	0.0011362	958.4145012407228	49.063	0.25249	48.909	48.783	49.036	-0.15405					6	4	2	0	0	0	0.042978	1	18792	18792		78.149	23.376	1	58221000			11625	3719	6787	6829	11210	11210					-0.07243077507132512
GEFGGFGSV	9	Unmodified	_GEFGGFGSV_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	HCT116MG_D190212_S1	1	856.3834228515625	1	856.383559	855.376283	0.68746	0.00058873	-0.35309	-0.00030238	0.33437	0.00028635	856.3831136331428	49.466	0.25721	49.466	49.286	49.543	0					7	4	2	0	0	0	0.0063744	1	18852	18852		125.62	62.062	1	45093000			11626	1822	6788	6830	11211	11211					-0.05719025470421002
GEFGGFGSV	9	Unmodified	_GEFGGFGSV_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	HCT116MG_D190212_S2	2	856.384033203125	1	856.383559	855.376283	0.45666	0.00039108	0.0010556	9.0403E-07	0.45772	0.00039198	856.3833840209194	49.607	0.35654	49.443	49.279	49.636	-0.16369					16	6	3	0	0	0	0.0035417	1	18977	18977		171.47	100.33	1	154280000			11627	1822	6788	6830	11212	11212					-0.05719025470421002
GEFGGFGSV	9	Unmodified	_GEFGGFGSV_					0	0	0		ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4	ENSG00000102054|ENST00000380087|RBBP7	ENSG00000102054|ENST00000380087|RBBP7	MULTI-MSMS	HCT116MG_D190212_S3	3	856.3836669921875	1	856.383559	855.376283	0.60382	0.0005171	-0.58907	-0.00050447	0.01475	1.2631E-05	856.3827968501136	49.754	0.41707	49.438	49.237	49.654	-0.3157					14	7	3	0	0	0	0.004194	1	18744	18744		147.83	84.268	1	31840000			11628	1822	6788	6830	11213	11213					-0.05719025470421002
GEFSITYKP	9	Unmodified	_GEFSITYKP_					0	0	0		ENSG00000115268|ENST00000592588|RPS15;ENST00000586096.3_1_19:1440314-1440458:+|nuORF;ENST00000522454.1_1_5:164028010-164028223:-|nuORF	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S1	1	521.2669067382812	2	521.266207	1040.51786	0.68122	0.0003551	0.1803	9.3986E-05	0.86152	0.00044908	521.2661980222446	41.437	0.46866	41.437	41.133	41.602	0					19	8	3	0	0	0	0.026999	1	15562	15562		89.401	49.451	1	26294000			11629	2458	6789	6831	11214	11214					-0.0007765216796542518
GEFSITYKP	9	Unmodified	_GEFSITYKP_					0	0	0		ENSG00000115268|ENST00000592588|RPS15;ENST00000586096.3_1_19:1440314-1440458:+|nuORF;ENST00000522454.1_1_5:164028010-164028223:-|nuORF	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S2	2	521.26611328125	2	521.266207	1040.51786	0.3851	0.00020074	0.34755	0.00018117	0.73265	0.00038191	521.2663656094237	41.422	0.45993	41.354	41.089	41.549	-0.068195					14	8	2	0	0	0	0.026999	1	15632	15632		89.401	45.628	1	59630000			11630	2458	6789	6831	11215	11215					-0.0007765216796542518
GEGAAKGK	8	Unmodified	_GEGAAKGK_					0	0	0		HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|73|2|sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|73|2|sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|73|2|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	359.19769287109375	2	359.198128	716.381703	-0.14991	-5.3846E-05	0.077562	2.786E-05	-0.072344	-2.5986E-05	359.1980239884228	17.144	0.156	16.795	16.717	16.873	-0.34933					4	2	2	0	0	0	0.81821	1	5845	5845		9.3474	0	1	7349800			11631	9219	6790	6832	11216	11216					0.012166981120572018
GEGDVPVAKS	10	Unmodified	_GEGDVPVAKS_					0	0	0			REV__ENST00000465154.1_1_9:130272232-130272589:-|nuORF	REV__ENST00000465154.1_1_9:130272232-130272589:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	479.7460021972656	2	479.745639	957.476725	0.36442	0.00017483	-0.15346	-7.3622E-05	0.21096	0.00010121	479.7456173060081	20.467	0.26009	20.266	20.144	20.404	-0.20133					6	4	2	0	0	0	0.58749	1	7038	7038		29.082	5.9332	1	2475400	+		11632	15817	6791	6833	11217	11217					-0.0037141320741511663
GEGDVPVAKS	10	Unmodified	_GEGDVPVAKS_					0	0	0			REV__ENST00000465154.1_1_9:130272232-130272589:-|nuORF	REV__ENST00000465154.1_1_9:130272232-130272589:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	479.745639	957.476725	0.22138	0.0001062	1.1203	0.00053747	1.3417	0.00064368	479.7460400624541	20.819	0.15614	20.438	20.34	20.497	-0.38077	0.086129	0.00057182	NaN	29.082	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5063300	+		11633	15817	6791	6833							-0.0037141320741511663
GEGIVIIA	8	Unmodified	_GEGIVIIA_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MULTI-MSMS	HCT116MG_D190212_S2	2	771.461181640625	1	771.461081	770.453805	1.0804	0.0008335	0.053376	4.1178E-05	1.1338	0.00087468	771.4611146103911	46.469	0.30906	46.357	46.162	46.471	-0.11121					8	5	2	0	0	0	0.55794	1	17707	17707		36.044	3.9272	1	24665000	+		11634	13944	6792	6834	11218	11218					0.0593961246577237
GEGPPPPARGP	11	Unmodified	_GEGPPPPARGP_					0	0	0			REV__nc|ENSG00000203804|Q5T5F5|ADAMTSL4-AS1	REV__nc|ENSG00000203804|Q5T5F5|ADAMTSL4-AS1	MULTI-MSMS	HCT116MG_D190212_S3	3	516.266845703125	2	516.267073	1030.51959	0.34684	0.00017906	-0.65997	-0.00034072	-0.31313	-0.00016166	516.2665618634758	26.496	2.0834	26.347	25.421	27.504	-0.14924					58	39	3	0	0	0	0.68267	1	9504	9504		26.268	3.5319	1	16467000	+		11635	17264	6793	6835	11219	11219					0.0055540164069043385
GEGPPPPARGP	11	Unmodified	_GEGPPPPARGP_					0	0	0			REV__nc|ENSG00000203804|Q5T5F5|ADAMTSL4-AS1	REV__nc|ENSG00000203804|Q5T5F5|ADAMTSL4-AS1	MULTI-MSMS	HCT116MG_D190212_S4	4	516.26708984375	2	516.267073	1030.51959	0.20033	0.00010342	-0.4713	-0.00024332	-0.27097	-0.00013989	516.2666996153824	26.58	1.3522	26.28	25.297	26.649	-0.30087					45	25	3	0	0	0	0.68267	2	9468	9370;9468		26.268	6.9062	1	11881000	+		11636	17264	6793	6835	11220;11221	11221					0.0055540164069043385
GEGQDEDGDSD	11	Unmodified	_GEGQDEDGDSD_					0	0	0			REV__ENST00000473068.1_1_7:133812120-133826373:+|nuORF	REV__ENST00000473068.1_1_7:133812120-133826373:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	562.1868896484375	2	562.186537	1122.35852	0.14043	7.8949E-05	1.4662	0.00082427	1.6066	0.00090322	562.1871252552352	17.27	0.31227	17.354	17.173	17.485	0.084467					7	5	2	0	0	0	0.74191	1	5800	5800		2.4985	0.43874	1	2213800	+		11637	12703	6794	6836	11222	11222					-0.1977648204453999
GEGQDEDGDSD	11	Unmodified	_GEGQDEDGDSD_					0	0	0			REV__ENST00000473068.1_1_7:133812120-133826373:+|nuORF	REV__ENST00000473068.1_1_7:133812120-133826373:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	562.186537	1122.35852	0.61897	0.00034798	1.2005	0.0006749	1.8195	0.0010229	562.1871037591483	17.471	0.20891	17.471	17.307	17.516	0	0.058487	-4.809E-05	NaN	2.4985	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2872100	+		11638	12703	6794	6836							-0.1977648204453999
GEGQDEDGDSD	11	Unmodified	_GEGQDEDGDSD_					0	0	0			REV__ENST00000473068.1_1_7:133812120-133826373:+|nuORF	REV__ENST00000473068.1_1_7:133812120-133826373:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	562.186537	1122.35852	0.14043	7.8949E-05	1.4662	0.00082427	1.6066	0.00090322	562.1871252552352	17.27	0.31227	17.354	17.173	17.485	0.084467	-0.058487	0.00025065	NaN	2.4985	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2213800	+		11639	12703	6794	6836							-0.1977648204453999
GEGVSGPVTEH	11	Unmodified	_GEGVSGPVTEH_					0	0	0		MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant;nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant	MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	534.7509155273438	2	534.751453	1067.48835	-0.19577	-0.00010469	0.26533	0.00014189	0.069563	3.7199E-05	534.7515609280615	16.175	0.63535	16.012	15.719	16.354	-0.16364					18	12	2	0	0	0	0.69138	1	5251	5251		24.991	2.3329	1	2313700			11640	1463	6795	6837	11223	11223					-0.042692161840932386
GEHDKMVAA	9	Unmodified	_GEHDKMVAA_					0	0	0		nc|ENSG00000160410|Q8TBC3-2|SHKBP1;SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1	nc|ENSG00000160410|Q8TBC3-2|SHKBP1	nc|ENSG00000160410|Q8TBC3-2|SHKBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	479.2265319824219	2	479.226559	956.438566	0.06902	3.3076E-05	0.0021923	1.0506E-06	0.071212	3.4127E-05	479.22646101843384	18.792	0.36496	18.792	18.662	19.027	0					11	6	3	0	0	0	0.026272	1	6484	6484		90.135	44.114	1	15621000			11641	4449	6796	6838	11224	11224					-0.041396223937454124
GEHDKMVAA	9	Unmodified	_GEHDKMVAA_					0	0	0		nc|ENSG00000160410|Q8TBC3-2|SHKBP1;SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1	nc|ENSG00000160410|Q8TBC3-2|SHKBP1	nc|ENSG00000160410|Q8TBC3-2|SHKBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2266540527344	2	479.226559	956.438566	0.20857	9.9952E-05	0.14132	6.7724E-05	0.34989	0.00016768	479.2265072092886	19.44	0.36397	19.07	18.94	19.304	-0.3695					13	6	3	0	0	0	0.011132	1	6742	6742		110.55	55.779	1	83754000			11642	4449	6796	6838	11225	11225					-0.041396223937454124
GEHDKMVAA	9	Unmodified	_GEHDKMVAA_					0	0	0		nc|ENSG00000160410|Q8TBC3-2|SHKBP1;SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1	nc|ENSG00000160410|Q8TBC3-2|SHKBP1	nc|ENSG00000160410|Q8TBC3-2|SHKBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	957.4468994140625	1	957.445842	956.438566	0.61884	0.0005925	0.23316	0.00022324	0.852	0.00081574	957.4460321541429	19.44	0.20842	19.07	18.94	19.148	-0.3695					6	3	2	0	0	0	0.094138	1	6767	6767		59.368	21.394	1	7974200			11643	4449	6796	6838	11226	11226					-0.041396223937454124
GEHDKMVAA	9	Unmodified	_GEHDKMVAA_					0	0	0		nc|ENSG00000160410|Q8TBC3-2|SHKBP1;SHKBP1|p.S624Ifs*31|1|0.32|ENSG00000160410|chr19:40590830-40590831|-/A|frameshift_variant;ENSG00000160410|ENST00000291842|SHKBP1	nc|ENSG00000160410|Q8TBC3-2|SHKBP1	nc|ENSG00000160410|Q8TBC3-2|SHKBP1	MSMS	HCT116MG_D190212_S3	3	479.2261047363281	2	479.226559	956.438566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.323	1	18.4	17.9	18.9	0.076334								0	0	0	0.094105	1	6215	6215		57.722	11.701	1				11644	4449	6796	6838	11227	11227					-0.041396223937454124
GEHGQCCCAPC	11	Unmodified	_GEHGQCCCAPC_					0	0	0			REV__ENST00000469559.5_1_3:38167506-38167863:-|nuORF	REV__ENST00000469559.5_1_3:38167506-38167863:-|nuORF	MSMS	HCT116MG_D190212_S2	2	554.1755981445312	2	554.177372	1106.34019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4357	1	9.1807	8.6807	9.6807	-0.25508								0	0	0	0.96149	1	2948	2948		0.30703	0.30703	1		+		11645	15856	6797	6839	11228	11228					-0.2087263329713096
GEIILHLY	8	Unmodified	_GEIILHLY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S2	2	479.273681640625	2	479.273835	956.533118	0.3615	0.00017326	0.12901	6.1832E-05	0.49052	0.00023509	479.2737427665885	52.452	0.30893	52.265	52.09	52.399	-0.18725					11	5	3	0	0	0	0.1757	1	20155	20155		78.445	41.979	1	26579000			11646	18668	6798	6840	11229	11229					0.053112594198864826
GEIILHLY	8	Unmodified	_GEIILHLY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S3	3	479.5735168457031	2	479.273835	956.533118	0.3185	0.00015265	-0.18767	-8.9947E-05	0.13083	6.2703E-05	479.27371965218674	52.685	0.15693	52.378	52.3	52.457	-0.30639					4	2	2	0	0	0	0.64761	1	19920	19920		28.173	6.4266	1	1225900			11647	18668	6798	6840	11230	11230					0.053112594198864826
GEIISHQY	8	Unmodified	_GEIISHQY_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000496956.1_1_1:63999833-64017523:+|nuORF;EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-MSMS	HCT116MG_D190212_S3	3	473.7349548339844	2	473.735074	945.455596	0.44196	0.00020937	-0.26178	-0.00012402	0.18017	8.5353E-05	473.7349300544842	28.721	0.26017	28.515	28.385	28.645	-0.20593					7	4	2	0	0	0	0.21275	1	10412	10412		71.134	16.36	1	6842800			11648	6318	6799	6841	11231	11231					-0.019313785162921704
GEIISHQY	8	Unmodified	_GEIISHQY_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000496956.1_1_1:63999833-64017523:+|nuORF;EFCAB7|p.F431Lfs*3|2|0.41|ENSG00000203965|chr1:63557186-63557186|T/-|frameshift_variant	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-MSMS	HCT116MG_D190212_S4	4	473.7350158691406	2	473.735074	945.455596	0.33142	0.00015701	-0.52182	-0.00024721	-0.1904	-9.02E-05	473.73472478725665	28.889	0.20774	28.548	28.418	28.626	-0.34059					5	3	2	0	0	0	0.557	1	10425	10425		36.127	5.4905	1	2396900			11649	6318	6799	6841	11232	11232					-0.019313785162921704
GEIKGSESA	9	Unmodified	_GEIKGSESA_					0	0	0		LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	439.2166748046875	2	439.216714	876.418876	0.0056966	2.5021E-06	0.09488	4.1673E-05	0.10058	4.4175E-05	439.216772570971	16.291	0.15601	16.291	16.213	16.369	0					4	2	2	0	0	0	0.29516	1	5503	5503		31.268	3.6395	1	2994100			11650	4252	6800	6842	11233	11233					-0.02427675132855711
GEIKGSESA	9	Unmodified	_GEIKGSESA_					0	0	0		LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	LARP1|p.D583Tfs*12|1|0.38|ENSG00000155506|chr5:154802262-154802262|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	439.21685791015625	2	439.216714	876.418876	0.079817	3.5057E-05	0.31695	0.00013921	0.39677	0.00017427	439.2167505336963	16.622	0.26015	16.28	16.152	16.412	-0.34183					9	4	3	0	0	0	0.040027	1	5609	5609		79.596	19.522	1	15358000			11651	4252	6800	6842	11234	11234					-0.02427675132855711
GEIRATAF	8	Unmodified	_GEIRATAF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1;RPA1|p.N274Mfs*5|1|0.18|ENSG00000132383|chr17:1879272-1879272|A/-|frameshift_variant	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S2	2	432.7322998046875	2	432.732335	863.450116	0.015189	6.5729E-06	-0.084977	-3.6772E-05	-0.069788	-3.02E-05	432.73224457405973	35.189	0.2583	35.042	34.876	35.134	-0.14716					8	4	3	0	0	0	0.44838	1	13152	13152		45.7	9.6554	1	18455000			11652	3183	6801	6843	11235	11235					0.01292942691884491
GEITGYEVDRP	11	Unmodified	_GEITGYEVDRP_					0	0	0			REV__ENSG00000115170|ENST00000434821|ACVR1	REV__ENSG00000115170|ENST00000434821|ACVR1	MSMS	HCT116MG_D190212_S3	3	618.2992553710938	2	618.298767	1234.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.339	1	27.17	26.67	27.67	-0.16933								0	0	0	0.78405	1	9848	9848		34.932	2.1464	1		+		11653	11530	6802	6844	11236	11236					-0.0249270243277806
GEITGYEVDRP	11	Unmodified	_GEITGYEVDRP_					0	0	0			REV__ENSG00000115170|ENST00000434821|ACVR1	REV__ENSG00000115170|ENST00000434821|ACVR1	MULTI-MSMS	HCT116MG_D190212_S4	4	618.8008422851562	2	618.298767	1234.58298	0.59327	0.00036682	0.020675	1.2783E-05	0.61395	0.0003796	618.2987715710789	27.478	0.46242	27.157	26.888	27.351	-0.32157					14	8	2	0	0	0	0.69464	1	9813	9813		23.79	4.4278	1	4195100	+		11654	11530	6802	6844	11237	11237					-0.0249270243277806
GEKFHSEVA	9	Unmodified	_GEKFHSEVA_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MULTI-MSMS	HCT116MG_D190212_S1	1	502.2461242675781	2	502.245806	1002.47706	0.49122	0.00024672	0.25045	0.00012579	0.74167	0.0003725	502.24588672029034	20.982	0.37245	20.982	20.8	21.173	0					12	6	3	0	0	0	0.0096523	1	7365	7365		114.2	64.269	1	29540000			11655	1892	6803	6845	11238	11238					-0.02407993487577187
GEKFHSEVA	9	Unmodified	_GEKFHSEVA_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MULTI-MSMS	HCT116MG_D190212_S2	2	502.2458190917969	2	502.245806	1002.47706	0.33792	0.00016972	0.05018	2.5203E-05	0.3881	0.00019492	502.24571286098245	21.63	0.46755	21.245	20.959	21.427	-0.38503					16	8	4	0	0	0	0.0059958	1	7624	7624		128.93	81.184	1	111520000			11656	1892	6803	6845	11239	11239					-0.02407993487577187
GEKFHSEVA	9	Unmodified	_GEKFHSEVA_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MSMS	HCT116MG_D190212_S3	3	502.24591064453125	2	502.245806	1002.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.758	1	20.793	20.293	21.293	0.034473								0	0	0	0.050056	1	7198	7198		70.332	35.4	1				11657	1892	6803	6845	11240	11240					-0.02407993487577187
GEKFHSEVA	9	Unmodified	_GEKFHSEVA_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MSMS	HCT116MG_D190212_S4	4	502.24639892578125	2	502.245806	1002.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.184	1	20.975	20.475	21.475	-0.20959								0	0	0	0.2496	1	7298	7298		43.772	15.286	1				11658	1892	6803	6845	11241	11241					-0.02407993487577187
GEKGYAFSP	9	Unmodified	_GEKGYAFSP_					0	0	0			REV__nc|ENSG00000079150|Q9Y680-1|FKBP7	REV__nc|ENSG00000079150|Q9Y680-1|FKBP7	MSMS	HCT116MG_D190212_S2	2	478.2276916503906	2	478.229625	954.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.667	1	20.288	19.788	20.788	-0.37949								0	0	0	0.55145	1	7233	7233		26.268	5.8145	1		+		11659	10847	6804	6846	11242	11242					-0.034347808905749844
GEKLGKRKR	9	Unmodified	_GEKLGKRKR_					0	0	0			REV__ENSG00000167658|ENST00000309311|EEF2	REV__ENSG00000167658|ENST00000309311|EEF2	MSMS	HCT116MG_D190212_S2	2	536.3040771484375	2	536.340907	1070.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.837	1	15.502	15.002	16.002	-0.33451								0	0	0	0.76967	1	5290	5290		2.0598	0	1		+		11660	13158	6805	6847	11243	11243					0.13475337965292056
GEKLYFLFWKL	11	Unmodified	_GEKLYFLFWKL_					0	0	0		nc|ENSG00000125952|P61244-5|MAX	nc|ENSG00000125952|P61244-5|MAX	nc|ENSG00000125952|P61244-5|MAX	MSMS	HCT116MG_D190212_S2	2	722.4085083007812	2	722.405381	1442.79621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.572	1	43.499	42.999	43.999	-0.073376								0	0	0	0.93456	1	16524	16524		14.405	4.2548	1				11661	9446	6806	6848	11244	11244					0.09252255084879835
GEKRFADAA	9	Unmodified	_GEKRFADAA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	HCT116MG_D190212_S1	1	482.7461242675781	2	482.745973	963.477394	0.08877	4.2853E-05	0.22335	0.00010782	0.31212	0.00015067	482.7460220666331	19.574	0.36542	19.574	19.443	19.809	0					16	6	4	0	0	0	0.0055242	1	6799	6799		133.05	76.875	1	63431000			11662	2885	6807	6849	11245	11245					-0.0058057376772922
GEKRFADAA	9	Unmodified	_GEKRFADAA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7460021972656	2	482.745973	963.477394	0.099119	4.7849E-05	0.077925	3.7618E-05	0.17704	8.5467E-05	482.7460020296879	20.271	0.58042	19.891	19.709	20.289	-0.37949					26	10	4	0	0	0	0.0080847	2	7077	7077;7112		118.07	70.32	1	318210000			11663	2885	6807	6849	11246;11247	11246					-0.0058057376772922
GEKRFADAA	9	Unmodified	_GEKRFADAA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	HCT116MG_D190212_S2	2	964.48486328125	1	964.48467	963.477394	0.54235	0.00052309	0.047036	4.5366E-05	0.58939	0.00056846	964.4845416765991	20.271	0.26192	19.891	19.761	20.023	-0.37949					9	4	3	0	0	0	0.016412	1	7099	7099		100.09	46.258	1	29658000			11664	2885	6807	6849	11248	11248					-0.0058057376772922
GEKRFADAA	9	Unmodified	_GEKRFADAA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	HCT116MG_D190212_S3	3	482.7459411621094	2	482.745973	963.477394	0.16002	7.7248E-05	0.065844	3.1786E-05	0.22586	0.00010903	482.7459516482992	19.196	0.31191	19.265	19.083	19.395	0.069159					12	5	3	0	0	0	0.011132	1	6570	6570		110.55	54.376	1	11807000			11665	2885	6807	6849	11249	11249					-0.0058057376772922
GEKRFADAA	9	Unmodified	_GEKRFADAA_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MATCH	HCT116MG_D190212_S1	1		1	964.48467	963.477394	0.61266	0.0005909	-0.019281	-1.8596E-05	0.59338	0.0005723	964.4843087693727	19.574	0.15656	19.574	19.495	19.652	0	-0.15877	-5.0914E-05	NaN	100.09	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2430700			11666	2885	6807	6849							-0.0058057376772922
GELEDKPPA	9	Unmodified	_GELEDKPPA_					0	0	0		PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant;PAK2|p.P185Rfs*14|1|0.2|ENSG00000180370|chr3:196806661-196806661|C/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	478.2403564453125	2	478.24019	954.465826	0.10827	5.1781E-05	0.26429	0.00012639	0.37257	0.00017818	478.24028023273723	24.035	0.36469	23.973	23.791	24.155	-0.061449					9	6	2	0	0	0	0.21258	1	8544	8544		39.95	3.4435	1	6903800			11667	5597	6808	6850	11250	11250					-0.013228155817159859
GELGESPCQRP	11	Unmodified	_GELGESPCQRP_					0	0	0		ENST00000597025.1_1_19:15567220-15568129:-|nuORF	ENST00000597025.1_1_19:15567220-15568129:-|nuORF	ENST00000597025.1_1_19:15567220-15568129:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	587.2730102539062	2	586.771862	1171.52917	0.47656	0.00027963	-0.17032	-9.9937E-05	0.30624	0.00017969	586.7717895480633	19.688	0.31252	19.747	19.542	19.854	0.059828					9	5	2	0	0	0	0.7259	1	6791	6791		12.241	0	1	2832600			11668	9069	6809	6851	11251	11251					-0.04973198136144674
GELGVQLSA	9	Unmodified	_GELGVQLSA_					0	0	0		ENST00000305105.2_1_7:100861034-100861073:+|nuORF	ENST00000305105.2_1_7:100861034-100861073:+|nuORF	ENST00000305105.2_1_7:100861034-100861073:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	873.4676513671875	1	873.467623	872.460347	0.83926	0.00073307	0.62053	0.00054202	1.4598	0.0012751	873.4685864057126	40.994	0.36167	40.924	40.777	41.138	-0.069626					9	6	2	0	0	0	0.055677	1	15495	15495		71.922	3.8416	1	16828000			11669	7023	6810	6852	11252	11252					0.019015056264606756
GELHEKYTQP	10	Unmodified	_GELHEKYTQP_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	HCT116MG_D190212_S4	4	601.2960205078125	2	601.296027	1200.5775	1.1963	0.00071935	-0.6699	-0.00040281	0.52642	0.00031653	601.2955499130658	32.27	1.3954	31.893	31.225	32.62	-0.37675					40	26	2	0	0	0	0.71349	1	11624	11624		19.257	4.4187	1	7553600	+		11670	10651	6811	6853	11253	11253					-0.014763812245746522
GELLFVHSA	9	Unmodified	_GELLFVHSA_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	HCT116MG_D190212_S1	1	486.7610778808594	2	486.761092	971.507631	0.38328	0.00018657	0.29288	0.00014256	0.67616	0.00032913	486.76094002921525	45.949	0.26138	45.949	45.765	46.027	0					9	4	3	0	0	0	0.084109	1	17451	17451		61.357	19.518	1	11637000			11671	4567	6812	6854	11254	11254					0.02073784897470432
GELLFVHSA	9	Unmodified	_GELLFVHSA_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	486.76116943359375	2	486.761092	971.507631	0.21197	0.00010318	0.35088	0.00017079	0.56284	0.00027397	486.76111689685445	45.939	0.41032	45.837	45.658	46.068	-0.1014					15	7	3	0	0	0	0.020181	1	17486	17486		96.285	46.352	1	110080000			11672	4567	6812	6854	11255	11255					0.02073784897470432
GELLFVHSA	9	Unmodified	_GELLFVHSA_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	HCT116MG_D190212_S3	3	486.7605895996094	2	486.761092	971.507631	0.39388	0.00019173	-0.096419	-4.6933E-05	0.29746	0.00014479	486.76090690401537	46.213	0.42783	45.9	45.751	46.179	-0.31238					27	13	3	0	0	0	0.012168	1	17301	17301		108	49.318	1	58791000			11673	4567	6812	6854	11256	11256					0.02073784897470432
GELLFVHSA	9	Unmodified	_GELLFVHSA_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;CAPN2|p.G198Vfs*20|1|0.29|ENSG00000162909|chr1:223747025-223747025|G/-|frameshift_variant	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	HCT116MG_D190212_S4	4	486.7606506347656	2	486.761092	971.507631	0.014715	7.1629E-06	0.22247	0.00010829	0.23718	0.00011545	486.7610938932775	46.251	0.31792	45.879	45.783	46.101	-0.37206					30	18	2	0	0	0	0.33687	1	17061	17061		26.884	8.7487	1	29053000			11674	4567	6812	6854	11257	11257					0.02073784897470432
GELRQTRL	8	Unmodified	_GELRQTRL_					0	0	0			REV__ENST00000360635.7_1_2:9563104-9563296:-|nuORF	REV__ENST00000360635.7_1_2:9563104-9563296:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	486.7825927734375	2	486.78289	971.551228	0.33031	0.00016079	-0.94603	-0.00046051	-0.61572	-0.00029972	486.7823604384643	15.001	0.15621	15.001	14.91	15.066	0					4	2	2	0	0	0	0.8506	1	4975	4975		5.2307	0	1	3772000	+		11675	15084	6813	6855	11258	11258					0.06431394394610379
GEMWNNTAA	9	Unmodified	_GEMWNNTAA_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000446155.1_1_1:45997278-45997635:+|nuORF;ENST00000507778.1_1_4:41844266-41844645:-|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S2	2	497.2083740234375	2	497.208366	992.40218	0.61923	0.00030788	0.35149	0.00017476	0.97071	0.00048265	497.20859286844495	36.225	0.31035	36.097	35.916	36.226	-0.12799					9	5	2	0	0	0	0.19461	1	13574	13574		41.84	28.332	1	15204000			11676	6037	6814	6856	11259	11259					-0.09432499290460328
GEMWNNTAA	9	Unmodified	_GEMWNNTAA_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000446155.1_1_1:45997278-45997635:+|nuORF;ENST00000507778.1_1_4:41844266-41844645:-|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S3	3	497.2085266113281	2	497.208366	992.40218	0.098521	4.8985E-05	0.057981	2.8829E-05	0.1565	7.7814E-05	497.20846506696705	36.42	0.41623	36.119	35.937	36.353	-0.30113					16	7	3	0	0	0	0.049545	1	13457	13457		74.929	40.827	1	21658000			11677	6037	6814	6856	11260	11260					-0.09432499290460328
GEMWNNTAA	9	Unmodified	_GEMWNNTAA_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000446155.1_1_1:45997278-45997635:+|nuORF;ENST00000507778.1_1_4:41844266-41844645:-|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S3	3	993.409423828125	1	993.409456	992.40218	0.35067	0.00034836	-0.043917	-4.3627E-05	0.30675	0.00030473	993.4093846896723	36.42	0.36411	36.119	35.937	36.301	-0.30113					12	6	3	0	0	0	0.035349	1	13460	13460		81.89	53.403	1	8568700			11678	6037	6814	6856	11261	11261					-0.09432499290460328
GEMWNNTAA	9	Unmodified	_GEMWNNTAA_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000446155.1_1_1:45997278-45997635:+|nuORF;ENST00000507778.1_1_4:41844266-41844645:-|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S4	4	497.20855712890625	2	497.208366	992.40218	0.55437	0.00027564	-0.33837	-0.00016824	0.216	0.0001074	497.2081394799741	36.501	0.36185	36.115	35.918	36.28	-0.38558					11	6	2	0	0	0	0.12205	1	13359	13359		53.833	32.086	1	7833800			11679	6037	6814	6856	11262	11262					-0.09432499290460328
GEMWNNTAA	9	Unmodified	_GEMWNNTAA_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000446155.1_1_1:45997278-45997635:+|nuORF;ENST00000507778.1_1_4:41844266-41844645:-|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S4	4	993.4111938476562	1	993.409456	992.40218	0.70074	0.00069612	-0.53635	-0.00053281	0.16439	0.00016331	993.4087768293447	36.485	0.25924	36.1	35.97	36.229	-0.38558					7	4	2	0	0	0	0.23138	1	13367	13367		37.974	22.127	1	4257100			11680	6037	6814	6856	11263	11263					-0.09432499290460328
GEMWNNTAA	9	Unmodified	_GEMWNNTAA_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000446155.1_1_1:45997278-45997635:+|nuORF;ENST00000507778.1_1_4:41844266-41844645:-|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	993.409456	992.40218	0.96098	0.00095465	-0.061689	-6.1282E-05	0.89929	0.00089337	993.4090915805571	36.225	0.20673	36.097	35.967	36.174	-0.12799	-0.0081347	4.73E-05	NaN	81.89	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9325700			11681	6037	6814	6856							-0.09432499290460328
GEMWSEQSA	9	Unmodified	_GEMWSEQSA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174253953-174254163:-|nuORF	ENSG00000164104|ENST00000296503|HMGB2	ENSG00000164104|ENST00000296503|HMGB2	MULTI-MSMS	HCT116MG_D190212_S3	3	1024.404052734375	1	1024.40404	1023.39676	0.36883	0.00037783	0.079469	8.1409E-05	0.44829	0.00045923	1024.4041780151392	36.407	0.31214	36.106	35.989	36.301	-0.30096					9	5	2	0	0	0	0.061422	1	13490	13490		69.105	34.703	1	4308400			11682	4668	6815	6857	11264	11264					-0.1140022287291913
GEMWSEQSA	9	Unmodified	_GEMWSEQSA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174253953-174254163:-|nuORF	ENSG00000164104|ENST00000296503|HMGB2	ENSG00000164104|ENST00000296503|HMGB2	MULTI-SECPEP	HCT116MG_D190212_S3	3	513.2545776367188	2	512.705657	1023.39676	-0.055274	-2.8339E-05	0.2558	0.00013115	0.20053	0.00010281	512.7057284347256	36.42	0.26002	36.119	35.989	36.249	-0.30113					6	4	2	0	0	0	0.24195	1	13430	13430		13.906	12.062	1	5348500			11683	4668	6815	6857	11265	11265					-0.1140022287291913
GENLPGDFQAQ	11	Unmodified	_GENLPGDFQAQ_					0	0	0		nc|ENSG00000215790|P0CK97-2|SLC35E2A	nc|ENSG00000215790|P0CK97-2|SLC35E2A	nc|ENSG00000215790|P0CK97-2|SLC35E2A	MULTI-MSMS	HCT116MG_D190212_S3	3	588.2706909179688	2	588.27001	1174.52547	0.61377	0.00036106	0.59129	0.00034784	1.2051	0.0007089	588.270270973209	30.085	0.90714	29.836	29.227	30.134	-0.24946					24	16	2	0	0	0	0.7093	1	10944	10944		18.373	2.224	1	6337900			11684	9636	6816	6858	11266	11266					-0.05481544638314517
GENPKTTPP	9	Unmodified	_GENPKTTPP_					0	0	0		nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	MSMS	HCT116MG_D190212_S1	1	470.7408447265625	2	470.740357	939.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.831	1	17.831	17.331	18.331	0								0	0	0	0.27628	1	6093	6093		41.84	15.498	1				11685	4345	6817	6859	11267	11267					-0.005993958618546458
GENPLQVLV	9	Unmodified	_GENPLQVLV_					0	0	0		ENST00000414617.1_1_21:34853889-34854420:-|nuORF;ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5	ENST00000414617.1_1_21:34853889-34854420:-|nuORF	ENST00000414617.1_1_21:34853889-34854420:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	968.5413818359375	1	968.541123	967.533846	0.72215	0.00069943	-0.07511	-7.2748E-05	0.64704	0.00062668	968.5410094982656	56.68	0.21375	56.498	56.364	56.578	-0.18261					6	3	2	0	0	0	0.023778	1	21902	21902		92.653	10.763	1	12934000			11686	1438	6818	6860	11268	11268					0.04878054068956317
GEPEPAITWNK	11	Unmodified	_GEPEPAITWNK_					0	0	0		PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant;PXDN|p.N1190Mfs*12|1|0.22|ENSG00000130508|chr2:1648211-1648211|T/-|frameshift_variant;PXDN|p.R1242Pfs*22|1|0.07|ENSG00000130508|chr2:1644636-1644637|-/AG|frameshift_variant;PXDN|p.E1339Lfs*66|1|0.26|ENSG00000130508|chr2:1639361-1639362|-/AG|frameshift_variant;ENSG00000130508|ENST00000252804|PXDN;ENST00000478155.5_1_2:1648438-1667521:-|nuORF;nc|ENSG00000130508|Q92626-2|PXDN;PXDN|p.C857Afs*5|2|0.33|ENSG00000130508|chr2:1649212-1649212|G/-|frameshift_variant;PXDN|p.N865Mfs*25|3|0.42|ENSG00000130508|chr2:1649188-1649188|G/-|frameshift_variant	PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant	PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	621.2830200195312	2	621.311677	1240.6088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.952	1	16.785	16.285	17.285	-0.16664								0	0	0	0.95273	1	5588	5588		4.897	0.56777	1				11687	3084	6819	6861	11269	11269					-0.0018780819050334685
GEPGEPGPGA	10	Unmodified	_GEPGEPGPGA_					0	0	0			REV__ENST00000502100.2_1_5:25190936-25302336:+|nuORF	REV__ENST00000502100.2_1_5:25190936-25302336:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	434.1958312988281	2	434.195782	866.377011	0.082366	3.5763E-05	-0.12571	-5.4585E-05	-0.043349	-1.8822E-05	434.1956747860419	18.105	1.037	17.93	17.428	18.465	-0.17501					44	19	3	0	0	0	0.17848	1	5954	5954		61.357	2.6787	1	8896500	+		11688	16114	6820	6862	11270	11270					-0.06152230821373905
GEPGPAGPQGA	11	Unmodified	_GEPGPAGPQGA_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant;ENST00000493991.5_1_12:48375847-48382223:-|nuORF;COL2A1|p.G741Wfs*29|1|0.36|ENSG00000139219|chr12:47982583-47982584|-/G|frameshift_variant	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MSMS	HCT116MG_D190212_S2	2	469.2179870605469	2	469.222331	936.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.252	1	19.873	19.373	20.373	-0.37949								0	0	0	0.86121	1	7069	7069		24.991	6.8446	1				11689	3613	6821	6863	11271	11271					-0.04064853038698857
GEPGPEGPA	9	Unmodified	_GEPGPEGPA_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	405.685302734375	2	405.68505	809.355547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.116	1	18.746	18.246	19.246	-0.3695								0	0	0	0.27276	1	6610	6610		42.095	11.87	1				11690	528	6822	6864	11272	11272					-0.05675615850088889
GEPGPEGPA	9	Unmodified	_GEPGPEGPA_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	810.3632202148438	1	810.362824	809.355547	0.90066	0.00072986	-0.76045	-0.00061624	0.14021	0.00011362	810.3625034333086	18.589	1.2494	18.663	17.838	19.088	0.073885					37	23	2	0	0	0	0.063511	2	6361	6361;6415		68.081	9.4019	1	3805200			11691	528	6822	6864	11273;11274	11273					-0.05675615850088889
GEPGPEGPA	9	Unmodified	_GEPGPEGPA_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	405.684814453125	2	405.68505	809.355547	-0.0020857	-8.4613E-07	-0.061442	-2.4926E-05	-0.063528	-2.5772E-05	405.684968519495	18.713	1.1453	18.782	17.886	19.031	0.069159					38	21	3	0	0	0	0.2853	1	6427	6427		32.305	3.8186	1	6175500			11692	528	6822	6864	11275	11275					-0.05675615850088889
GEPGPEGPA	9	Unmodified	_GEPGPEGPA_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	405.68511962890625	2	405.68505	809.355547	0.041834	1.6971E-05	-0.11801	-4.7876E-05	-0.076179	-3.0905E-05	405.68492343177996	18.844	0.88128	18.663	18.046	18.927	-0.18052					30	16	2	0	0	0	0.1037	2	6407	6166;6407		57.471	13.064	1	4841600			11693	528	6822	6864	11276;11277	11277					-0.05675615850088889
GEPGPEGPA	9	Unmodified	_GEPGPEGPA_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	810.3633422851562	1	810.362824	809.355547	0.83333	0.0006753	-0.091596	-7.4226E-05	0.74173	0.00060107	810.3626858920595	18.824	0.98517	18.644	17.942	18.927	-0.18052					28	18	2	0	0	0	0.042978	1	6412	6412		78.149	3.7266	1	3168500			11694	528	6822	6864	11278	11278					-0.05675615850088889
GEPGPEGPAG	10	Unmodified	_GEPGPEGPAG_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	434.1957702636719	2	434.195782	866.377011	-0.32935	-0.000143	0.38543	0.00016735	0.056072	2.4346E-05	434.1958790787517	18.502	0.78192	18.139	17.643	18.425	-0.36325					21	14	2	0	0	0	0.34998	1	6339	6339		46.021	2.1627	1	7965400			11695	528	6823	6865	11279	11279					-0.06152230821373905
GEPGPEGPAG	10	Unmodified	_GEPGPEGPAG_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	867.384033203125	1	867.384288	866.377011	0.47236	0.00040972	0.12793	0.00011097	0.60029	0.00052068	867.384420574907	18.554	0.67778	18.191	17.643	18.321	-0.36325					16	12	2	0	0	0	0.076419	1	6380	6380		78.728	0.57865	1	4266300			11696	528	6823	6865	11280	11280					-0.06152230821373905
GEPGPEGPAG	10	Unmodified	_GEPGPEGPAG_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	434.2140808105469	2	434.195782	866.377011	0.013732	5.9622E-06	0.096894	4.2071E-05	0.11063	4.8033E-05	434.19571034175846	18.115	1.3532	18.191	17.425	18.778	0.076334					48	25	3	0	0	0	0.30623	2	5946	5946;6192		49.933	6.0747	1	11714000			11697	528	6823	6865	11281;11282	11281					-0.06152230821373905
GEPGPEGPAG	10	Unmodified	_GEPGPEGPAG_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	434.1956787109375	2	434.195782	866.377011	0.082366	3.5763E-05	-0.12571	-5.4585E-05	-0.043349	-1.8822E-05	434.1956747860419	18.105	1.037	17.93	17.428	18.465	-0.17501					44	19	3	0	0	0	0.13038	1	6176	6176		68.081	15.812	1	8896500			11698	528	6823	6865	11283	11283					-0.06152230821373905
GEPGPREGPAQ	11	Unmodified	_GEPGPREGPAQ_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000529525.1_1_11:61657830-61658904:-|nuORF;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	MULTI-MSMS	HCT116MG_D190212_S3	3	548.2669677734375	2	547.764894	1093.51524	0.33717	0.00018469	0.091078	4.9889E-05	0.42825	0.00023458	547.7649025006676	18.186	0.9892	18.263	17.633	18.622	0.076336					38	18	3	0	0	0	0.56597	1	6122	6122		39.213	7.9447	1	8618400			11699	6474	6824	6866	11284	11284					-0.02778107572908084
GEPLALGH	8	Unmodified	_GEPLALGH_					0	0	0			REV__TNKS|p.N555Kfs*2|1|0.29|ENSG00000173273|chr8:9710033-9710034|-/A|frameshift_variant	REV__TNKS|p.N555Kfs*2|1|0.29|ENSG00000173273|chr8:9710033-9710034|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	397.2144470214844	2	397.213778	792.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.512	1	46.14	45.64	46.64	-0.37134								0	0	0	0.8837	1	17174	17174		2.5775	0	1		+		11700	13430	6825	6867	11285	11285					0.008492711461599356
GEQDWVNRP	9	Unmodified	_GEQDWVNRP_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	HCT116MG_D190212_S1	1	550.7598266601562	2	550.759612	1099.50467	0.64001	0.00035249	-0.59169	-0.00032588	0.048321	2.6613E-05	550.7593766950366	31.258	0.26026	31.258	31.128	31.388	0					7	4	2	0	0	0	0.37539	1	11519	11519		24.021	2.4836	1	5652700			11701	4994	6826	6868	11286	11286					-0.04110090227322871
GEQDWVNRP	9	Unmodified	_GEQDWVNRP_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	HCT116MG_D190212_S2	2	550.7603149414062	2	550.759612	1099.50467	0.62621	0.00034489	0.5922	0.00032616	1.2184	0.00067105	550.7598943821234	31.44	0.25837	31.191	31.043	31.302	-0.24883					10	4	3	0	0	0	0.0082095	1	11614	11614		117.76	77.811	1	17283000			11702	4994	6826	6868	11287	11287					-0.04110090227322871
GEQEGAMVA	9	Unmodified	_GEQEGAMVA_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	HCT116MG_D190212_S2	2	891.388916015625	1	891.387658	890.380382	1.0064	0.00089708	-0.093418	-8.3271E-05	0.91297	0.00081381	891.3876017516432	27.092	0.26431	26.739	26.554	26.818	-0.35254					6	4	2	0	0	0	0.023938	1	9835	9835		92.491	33.813	1	16051000			11703	3576	6827	6869	11288	11288					-0.0691930403902461
GEQEGAMVA	9	Unmodified	_GEQEGAMVA_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	HCT116MG_D190212_S3	3	891.388427734375	1	891.387658	890.380382	0.95118	0.00084787	-0.27128	-0.00024182	0.6799	0.00060605	891.3874782884492	26.95	0.41686	26.781	26.599	27.016	-0.16933					12	7	2	0	0	0	0.023938	1	9698	9698		92.491	33.813	1	8834800			11704	3576	6827	6869	11289	11289					-0.0691930403902461
GEQEGAMVA	9	Unmodified	_GEQEGAMVA_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	HCT116MG_D190212_S4	4	891.3882446289062	1	891.387658	890.380382	0.78717	0.00070167	-0.37039	-0.00033016	0.41677	0.00037151	891.3873145442959	27.114	0.26	26.803	26.639	26.899	-0.3114					6	4	2	0	0	0	0.023938	1	9704	9704		92.491	40.223	1	2579600			11705	3576	6827	6869	11290	11290					-0.0691930403902461
GEQEGAMVAA	10	Unmodified	_GEQEGAMVAA_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	HCT116MG_D190212_S2	2	962.4257202148438	1	962.424772	961.417496	0.63188	0.00060813	0.032685	3.1456E-05	0.66456	0.00063959	962.4242959708399	28.333	0.20732	28.003	27.874	28.081	-0.32987					5	3	2	0	0	0	0.033083	1	10344	10344		99.755	23.994	1	12457000			11706	3576	6828	6870	11291	11291					-0.06475632493265948
GEQEGAMVAA	10	Unmodified	_GEQEGAMVAA_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	HCT116MG_D190212_S3	3	962.4248657226562	1	962.424772	961.417496	0.61997	0.00059667	-0.2358	-0.00022694	0.38417	0.00036973	962.4246856336517	28.339	0.36528	28.133	27.968	28.333	-0.20593					9	6	2	0	0	0	0.047039	1	10265	10265		89.401	22.944	1	6072400			11707	3576	6828	6870	11292	11292					-0.06475632493265948
GEQEGAMVAA	10	Unmodified	_GEQEGAMVAA_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	HCT116MG_D190212_S3	3	481.7167663574219	2	481.716024	961.417496	0.15638	7.5332E-05	0.58591	0.00028224	0.74229	0.00035757	481.7163136785247	28.304	0.31322	28.098	27.968	28.281	-0.20593					9	5	2	0	0	0	0.35357	1	10268	10268		45.7	20.3	1	4905100			11708	3576	6828	6870	11293	11293					-0.06475632493265948
GEQEGAMVAA	10	Unmodified	_GEQEGAMVAA_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	HCT116MG_D190212_S4	4	962.4254760742188	1	962.424772	961.417496	0.52441	0.0005047	0.39971	0.00038469	0.92412	0.0008894	962.425221030718	28.421	0.25992	28.09	28.012	28.272	-0.33138					6	4	2	0	0	0	0.13861	1	10250	10250		66.457	20.757	1	1307000			11709	3576	6828	6870	11294	11294					-0.06475632493265948
GEQEGAMVAA	10	Unmodified	_GEQEGAMVAA_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MATCH	HCT116MG_D190212_S2	2		2	481.716024	961.417496	0.19965	9.6176E-05	0.18657	8.9873E-05	0.38622	0.00018605	481.71609376347595	28.333	0.20772	28.003	27.822	28.029	-0.32987	-0.047546	-0.00017063	NaN	45.7	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8825500			11710	3576	6828	6870							-0.06475632493265948
GEQEPPPPP	9	Unmodified	_GEQEPPPPP_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	HCT116MG_D190212_S3	3	474.2271728515625	2	474.227082	946.439611	0.19673	9.3293E-05	0.34274	0.00016254	0.53947	0.00025583	474.22715343546776	23.292	0.67747	23.253	23.083	23.76	-0.03968					15	12	2	0	0	0	0.16306	1	8215	8215		45.7	15.063	1	2306000			11711	2155	6829	6871	11295	11295					-0.0357508475318582
GEQEPPPPP	9	Unmodified	_GEQEPPPPP_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MATCH	HCT116MG_D190212_S2	2		2	474.227082	946.439611	0.34421	0.00016323	0.66988	0.00031767	1.0141	0.0004809	474.22734132883306	23.852	0.20856	23.469	23.299	23.508	-0.38324	0.10812	0.00018541	NaN	45.7	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2793100			11712	2155	6829	6871							-0.0357508475318582
GEQEPPPPP	9	Unmodified	_GEQEPPPPP_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	474.227082	946.439611	0.19673	9.3293E-05	0.34274	0.00016254	0.53947	0.00025583	474.22715343546776	23.292	0.67747	23.253	23.083	23.76	-0.03968	-0.10812	-0.00012486	NaN	45.7	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2306000			11713	2155	6829	6871							-0.0357508475318582
GEQKSTSISTA	11	Unmodified	_GEQKSTSISTA_					0	0	0		POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENSG00000177084|ENST00000320574|POLE;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	554.7783203125	2	554.777667	1107.54078	0.21968	0.00012188	0.42511	0.00023584	0.6448	0.00035772	554.7780942636464	19.075	0.3128	18.706	18.575	18.888	-0.3695					7	5	2	0	0	0	0.41923	1	6623	6623		53.317	18.385	1	8657800			11714	5449	6830	6872	11296	11296					-0.0086867784111746
GEQPLWGQS	9	Unmodified	_GEQPLWGQS_					0	0	0			REV__ENSG00000187791|ENST00000340783|FAM205C	REV__ENSG00000187791|ENST00000340783|FAM205C	MULTI-SECPEP	HCT116MG_D190212_S4	4	500.7564392089844	2	501.237981	1000.46141	0.39115	0.00019606	0.033884	1.6984E-05	0.42503	0.00021304	501.2379248724101	21.359	0.15594	21.14	21.01	21.166	-0.21832					4	2	2	0	0	0	0.23771	1	7321	7321		10.074	4.777	1	1644800	+		11715	13936	6831	6873	11297	11297					-0.03880280004614178
GERDFQTSA	9	Unmodified	_GERDFQTSA_					0	0	0		nc|ENSG00000114982|Q9P2N6-2|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3;ENST00000478492.1_1_2:97302656-97302896:-|nuORF;KANSL3|p.V319*|1|0.43|ENSG00000114982|chr2:96612521-96612521|C/-|frameshift_variant	nc|ENSG00000114982|Q9P2N6-2|KANSL3	nc|ENSG00000114982|Q9P2N6-2|KANSL3	MULTI-MSMS	HCT116MG_D190212_S1	1	505.7308044433594	2	505.73052	1009.44649	0.38197	0.00019317	0.29682	0.00015011	0.67879	0.00034328	505.73047024834494	22.507	0.26081	22.507	22.376	22.637	0					6	4	2	0	0	0	0.41788	1	7994	7994		21.59	3.4438	1	7703100			11716	2439	6832	6874	11298	11298					-0.05785771872604073
GERDFQTSA	9	Unmodified	_GERDFQTSA_					0	0	0		nc|ENSG00000114982|Q9P2N6-2|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3;ENST00000478492.1_1_2:97302656-97302896:-|nuORF;KANSL3|p.V319*|1|0.43|ENSG00000114982|chr2:96612521-96612521|C/-|frameshift_variant	nc|ENSG00000114982|Q9P2N6-2|KANSL3	nc|ENSG00000114982|Q9P2N6-2|KANSL3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	505.73052	1009.44649	0.25579	0.00012936	0.0060735	3.0715E-06	0.26187	0.00013243	505.7306352001187	22.484	0.36458	22.465	22.335	22.699	-0.018869	-0.060403	7.9981E-05	NaN	21.59	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4611200			11717	2439	6832	6874							-0.05785771872604073
GERGATLAA	9	Unmodified	_GERGATLAA_					0	0	0		ENST00000250559.13_1_12:69004665-69004809:+|nuORF;ENST00000542018.5_2_12:69004749-69018568:+|nuORF	ENST00000250559.13_1_12:69004665-69004809:+|nuORF	ENST00000250559.13_1_12:69004665-69004809:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	423.2274475097656	2	423.227417	844.44028	-0.0033123	-1.4018E-06	0.15464	6.5449E-05	0.15133	6.4047E-05	423.22745374147803	22.523	0.20875	22.523	22.376	22.585	0					5	3	2	0	0	0	0.45684	1	7995	7995		19.362	0.10495	1	4617800			11718	6797	6833	6875	11299	11299					0.011837546865194781
GERQLFFFL	9	Unmodified	_GERQLFFFL_					0	0	0			REV__RSPO2|p.R64Q|2|0.31|ENSG00000147655|chr8:107989148-107989148|C/T|missense_variant	REV__RSPO2|p.R64Q|2|0.31|ENSG00000147655|chr8:107989148-107989148|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	578.8086547851562	2	578.811116	1155.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.999	1	17.999	17.499	18.499	0								0	0	0	0.7689	1	6161	6161		4.756	0.81161	1		+		11719	17483	6834	6876	11300	11300					0.03610022231259791
GERQQLQL	8	Unmodified	_GERQQLQL_					0	0	0			REV__ENST00000529262.5_1_6:135518089-135539115:+|nuORF	REV__ENST00000529262.5_1_6:135518089-135539115:+|nuORF	MSMS	HCT116MG_D190212_S1	1	486.3291015625	2	486.267073	970.519593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.992	1	45.992	45.492	46.492	0								0	0	0	0.87079	1	17438	17438		16.942	0	1		+		11720	11636	6835	6877	11301	11301					0.03315401640657001
GERSGLKPP	9	Unmodified	_GERSGLKPP_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MSMS	HCT116MG_D190212_S3	3	470.7637023925781	2	470.764166	939.513779	0.18631	8.7709E-05	-0.49218	-0.0002317	-0.30587	-0.00014399	470.7639439622058	21.703	0.42245	21.721	21.377	21.799	0.018446					11	7	2	0	0	0	0.17622	1	7548	7548		43.772	5.7984	1	4910300			11721	918	6836	6878	11302	11302					0.04160303128992382
GESDEAYMSD	10	Unmodified	_GESDEAYMSD_					0	0	0			REV__ENSG00000171962|ENST00000399187|DRC3	REV__ENSG00000171962|ENST00000399187|DRC3	MSMS	HCT116MG_D190212_S1	1	552.1964111328125	2	552.195319	1102.37608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.8741	1	0.8741	0.3741	1.3741	0								0	0	0	0.96377	1	264	264		1.6526	0	1		+		11722	13370	6837	6879	11303	11303					-0.17100858043227163
GESDEAYMSD	10	Unmodified	_GESDEAYMSD_					0	0	0			REV__ENSG00000171962|ENST00000399187|DRC3	REV__ENSG00000171962|ENST00000399187|DRC3	MSMS	HCT116MG_D190212_S3	3	552.1961669921875	2	552.195319	1102.37608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.1278	1	4.1565	3.6565	4.6565	0.028732								0	0	0	0.96377	1	1240	1240		1.6526	0	1		+		11723	13370	6837	6879	11304	11304					-0.17100858043227163
GESDEAYMSD	10	Unmodified	_GESDEAYMSD_					0	0	0			REV__ENSG00000171962|ENST00000399187|DRC3	REV__ENSG00000171962|ENST00000399187|DRC3	MSMS	HCT116MG_D190212_S4	4	552.1962280273438	2	552.195319	1102.37608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.478	1	64.244	63.744	64.744	-0.23412								0	0	0	0.96377	1	24264	24264		1.6526	0	1		+		11724	13370	6837	6879	11305	11305					-0.17100858043227163
GESFSRDQF	9	Unmodified	_GESFSRDQF_					0	0	0			REV__ZFP36L1|p.R87Q|1|0.3|ENSG00000185650|chr14:68790290-68790290|C/T|missense_variant	REV__ZFP36L1|p.R87Q|1|0.3|ENSG00000185650|chr14:68790290-68790290|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	357.84808349609375	3	358.161322	1071.46214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.277	1	33.892	33.392	34.392	-0.38558								0	0	0	0.76809	1	12510	12510		7.609	4.2893	1		+		11725	18068	6838	6880	11306	11306					-0.07073485355567755
GETGPAGPA	9	Unmodified	_GETGPAGPA_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;ENSG00000123500|ENST00000651968|COL10A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000123500|ENST00000651968|COL10A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	756.3523559570312	1	756.352259	755.344983	0.51293	0.00038796	0.18926	0.00014315	0.70219	0.0005311	756.3524916456785	19.56	0.36465	19.62	19.49	19.854	0.05983					9	6	2	0	0	0	0.0066639	1	6722	6722		123.1	37.739	1	4340700			11726	513;2806	6839	6881	11307	11307					-0.0424759850452574
GETIDYLRNA	10	Unmodified	_GETIDYLRNA_					0	0	0			REV__ENST00000482940.5_1_7:144378950-144433304:-|nuORF	REV__ENST00000482940.5_1_7:144378950-144433304:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	576.2883911132812	2	576.288202	1150.56185	0.56834	0.00032753	-0.060548	-3.4893E-05	0.50779	0.00029263	576.2879835103362	27.504	0.31218	27.323	27.056	27.368	-0.18127					9	5	2	0	0	0	0.67188	1	9918	9918		22.736	1.1993	1	2549100	+		11727	14032	6840	6882	11308	11308					-0.007406677416156526
GETIDYLRNA	10	Unmodified	_GETIDYLRNA_					0	0	0			REV__ENST00000482940.5_1_7:144378950-144433304:-|nuORF	REV__ENST00000482940.5_1_7:144378950-144433304:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	576.288202	1150.56185	0.56834	0.00032753	-0.060548	-3.4893E-05	0.50779	0.00029263	576.2879835103362	27.504	0.31218	27.323	27.056	27.368	-0.18127	-0.017613	0.00026231	NaN	22.736	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2549100	+		11728	14032	6840	6882							-0.007406677416156526
GETIFVTA	8	Unmodified	_GETIFVTA_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	837.4354248046875	1	837.435261	836.427984	0.73323	0.00061403	-0.21754	-0.00018218	0.51568	0.00043185	837.4350673666141	46.336	0.25862	46.225	46.059	46.317	-0.11121					8	4	2	0	0	0	0.12463	1	17664	17664		89.427	0	1	13889000			11729	3710	6841	6883	11309	11309					0.00322718223458196
GETIFVTAP	9	Unmodified	_GETIFVTAP_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S1	1	934.489501953125	1	934.488024	933.480748	0.75176	0.00070251	0.41878	0.00039135	1.1705	0.0010939	934.4882382869024	48.589	0.30871	48.589	48.408	48.717	0					13	5	3	0	0	0	0.019399	1	18479	18479		97.075	0	1	48182000			11730	3710	6842	6884	11310	11310					0.011346762862672222
GETIFVTAP	9	Unmodified	_GETIFVTAP_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	934.48876953125	1	934.488024	933.480748	0.83906	0.00078409	0.31182	0.0002914	1.1509	0.0010755	934.4882120588334	48.755	0.40554	48.611	48.388	48.794	-0.1437					15	7	3	0	0	0	0.043314	1	18620	18620		77.984	0	1	154330000			11731	3710	6842	6884	11311	11311					0.011346762862672222
GETIFVTAP	9	Unmodified	_GETIFVTAP_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S3	3	934.4888916015625	1	934.488024	933.480748	0.96859	0.00090514	-0.031476	-2.9414E-05	0.93712	0.00087573	934.4879007314537	48.947	0.31729	48.631	48.499	48.816	-0.31596					9	5	2	0	0	0	0.031005	1	18434	18434		85.357	0	1	5489100			11732	3710	6842	6884	11312	11312					0.011346762862672222
GETKAYVF	8	Unmodified	_GETKAYVF_					0	0	0		ENSG00000173334|ENST00000311922|TRIB1;ENSG00000071575|ENST00000155926|TRIB2	ENSG00000173334|ENST00000311922|TRIB1	ENSG00000173334|ENST00000311922|TRIB1	MULTI-MSMS	HCT116MG_D190212_S3	3	457.7345886230469	2	457.734543	913.454533	0.35051	0.00016044	-0.32646	-0.00014943	0.024045	1.1006E-05	457.7344461321721	39.199	0.318	38.898	38.716	39.034	-0.30137					7	5	2	0	0	0	0.46892	1	14570	14570		43.858	20.71	1	8016700			11733	5284	6843	6885	11313	11313					-0.005655928851979297
GETKAYVF	8	Unmodified	_GETKAYVF_					0	0	0		ENSG00000173334|ENST00000311922|TRIB1;ENSG00000071575|ENST00000155926|TRIB2	ENSG00000173334|ENST00000311922|TRIB1	ENSG00000173334|ENST00000311922|TRIB1	MULTI-MSMS	HCT116MG_D190212_S4	4	457.73492431640625	2	457.734543	913.454533	0.21959	0.00010052	0.28208	0.00012912	0.50168	0.00022963	457.734571641882	39.344	0.20812	38.964	38.849	39.057	-0.38055					8	4	2	0	0	0	0.30543	1	14458	14458		58.679	14.272	1	2490100			11734	5284	6843	6885	11314	11314					-0.005655928851979297
GETKSSYIA	9	Unmodified	_GETKSSYIA_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.M256Nfs*17|1|0.13|ENSG00000121486|chr1:185143918-185143919|-/T|frameshift_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	HCT116MG_D190212_S2	2	478.24017333984375	2	478.24019	954.465826	0.28875	0.00013809	0.56695	0.00027114	0.8557	0.00040923	478.24048248490317	24.593	0.36513	24.213	24.082	24.448	-0.38003					9	6	2	0	0	0	0.26536	1	8844	8844		34.402	10.381	1	14800000			11735	2733	6844	6886	11315	11315					-0.013228155817159859
GETKSSYIAA	10	Unmodified	_GETKSSYIAA_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.M256Nfs*17|1|0.13|ENSG00000121486|chr1:185143918-185143919|-/T|frameshift_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	HCT116MG_D190212_S1	1	513.759033203125	2	513.758746	1025.50294	0.30146	0.00015488	0.068368	3.5125E-05	0.36983	0.00019	513.7588952843921	25.483	0.26084	25.483	25.353	25.614	0					6	4	2	0	0	0	0.13161	1	9174	9174		67.838	27.599	1	9334500			11736	2733	6845	6887	11316	11316					-0.008791440359573244
GETKSSYIAA	10	Unmodified	_GETKSSYIAA_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.M256Nfs*17|1|0.13|ENSG00000121486|chr1:185143918-185143919|-/T|frameshift_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7589111328125	2	513.758746	1025.50294	0.34642	0.00017798	-0.15488	-7.9573E-05	0.19153	9.8402E-05	513.7586015550382	25.893	0.36348	25.524	25.343	25.706	-0.36914					10	6	2	0	0	0	0.13161	1	9366	9366		67.838	25.999	1	38335000			11737	2733	6845	6887	11317	11317					-0.008791440359573244
GETKSSYIAA	10	Unmodified	_GETKSSYIAA_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.M256Nfs*17|1|0.13|ENSG00000121486|chr1:185143918-185143919|-/T|frameshift_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	513.758746	1025.50294	0.30899	0.00015875	-0.25049	-0.00012869	0.058501	3.0055E-05	513.7586473862729	25.596	0.20799	25.468	25.338	25.546	-0.12795	-0.02353	-7.7381E-05	NaN	67.838	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2923700			11738	2733	6845	6887							-0.008791440359573244
GETQVVSLTP	10	Unmodified	_GETQVVSLTP_					0	0	0			REV__ENSG00000187764|ENST00000422704|SEMA4D	REV__ENSG00000187764|ENST00000422704|SEMA4D	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7745971679688	2	515.774396	1029.53424	0.19992	0.00010311	0.11255	5.8052E-05	0.31247	0.00016116	515.7743724694933	34.054	0.62334	33.879	33.5	34.124	-0.17511					21	11	3	0	0	0	0.45751	1	12686	12686		38.176	0.20157	1	20988000	+		11739	13932	6846	6888	11318	11318					0.02065428998139396
GEVAGEPEPH	10	Unmodified	_GEVAGEPEPH_					0	0	0			REV__ENSG00000149634|ENST00000372519|SPATA25	REV__ENSG00000149634|ENST00000372519|SPATA25	MULTI-MSMS	HCT116MG_D190212_S4	4	511.23284912109375	2	511.232896	1020.45124	0.22984	0.0001175	-0.68475	-0.00035007	-0.45491	-0.00023257	511.23273822616693	21.172	1.0901	20.963	20.448	21.538	-0.20959					34	20	2	0	0	0	0.33066	2	7187	7149;7187		47.749	4.5611	1	4592300	+		11740	12570	6847	6889	11319;11320	11320					-0.05816887729861264
GEVEDNVKFEN	11	Unmodified	_GEVEDNVKFEN_					0	0	0			REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	640.2938842773438	2	640.293682	1278.57281	0.53737	0.00034407	-0.088744	-5.6822E-05	0.44863	0.00028725	640.2935130950785	30.979	0.93105	30.712	30.353	31.284	-0.26704					31	17	2	0	0	0	0.65047	1	11435	11435		29.841	9.426	1	12724000	+		11741	17967	6848	6890	11321	11321					-0.055333101579890354
GEVEDNVKFEN	11	Unmodified	_GEVEDNVKFEN_					0	0	0			REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	640.2937622070312	2	640.293682	1278.57281	0.47336	0.00030309	0.0026052	1.6681E-06	0.47596	0.00030475	640.2936460361059	31.482	1.3562	31.212	30.23	31.586	-0.27027					70	29	3	0	0	0	0.69138	2	11520	11279;11520		24.991	7.5483	1	13755000	+		11742	17967	6848	6890	11322;11323	11323					-0.055333101579890354
GEVEDNVKFEN	11	Unmodified	_GEVEDNVKFEN_					0	0	0			REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	640.794921875	2	640.293682	1278.57281	0.42164	0.00026998	0.23075	0.00014775	0.6524	0.00041773	640.2939217474683	30.279	0.61408	29.922	29.389	30.003	-0.3571					22	11	3	0	0	0	0.71532	2	10889	10889;10972		16.149	16.149	1	5312300	+		11743	17967	6848	6890	11324;11325	11324					-0.055333101579890354
GEVEDNVKFEN	11	Unmodified	_GEVEDNVKFEN_					0	0	0			REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	REV__tr|U7T4G2|U7T4G2_FUSNU4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ispHPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	640.2936401367188	2	640.293682	1278.57281	0.395	0.00025292	0.24583	0.00015741	0.64084	0.00041032	640.2938095187354	31.496	1.3763	31.125	30.218	31.595	-0.37026					76	30	3	0	0	0	0.63759	2	11180	11180;11403		31.268	10.854	1	16837000	+		11744	17967	6848	6890	11326;11327	11326					-0.055333101579890354
GEVETQVY	8	Unmodified	_GEVETQVY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	HCT116MG_D190212_S1	1	924.4328002929688	1	924.430903	923.423627	1.066	0.00098547	0.91193	0.00084302	1.978	0.0018285	924.4318463701597	31.102	0.20837	31.102	30.971	31.18	0					5	3	2	0	0	0	0.20735	1	11462	11462		53.576	21.459	1	2675100			11745	1027;18285	6849	6891	11328	11328					-0.041147909900928425
GEVETQVY	8	Unmodified	_GEVETQVY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	924.431884765625	1	924.430903	923.423627	1.0995	0.0010164	0.13143	0.00012149	1.2309	0.0011379	924.4307126014895	31.267	0.36165	31	30.87	31.232	-0.26704					12	6	3	0	0	0	0.17804	1	11550	11550		77.984	7.2688	1	23444000			11746	1027;18285	6849	6891	11329	11329					-0.041147909900928425
GEVETQVY	8	Unmodified	_GEVETQVY_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S3	3	924.4312744140625	1	924.430903	923.423627	0.82515	0.0007628	-0.18913	-0.00017484	0.63602	0.00058796	924.4305923987923	31.465	0.31331	31.195	31.012	31.326	-0.27028					10	5	2	0	0	0	0.070772	1	11500	11500		101.72	16.365	1	9235200			11747	1027;18285	6849	6891	11330	11330					-0.041147909900928425
GEVLPDEGRE	10	Unmodified	_GEVLPDEGRE_					0	0	0			REV__ENST00000494397.5_1_X:153175958-153178171:-|nuORF	REV__ENST00000494397.5_1_X:153175958-153178171:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	550.7655029296875	2	550.76456	1099.51457	0.41638	0.00022933	-0.17548	-9.6647E-05	0.2409	0.00013268	551.265437606353	15.423	0.26025	15.508	15.352	15.612	0.085424					7	4	2	0	0	0	0.78781	1	5071	5071		13.042	2.2185	1	897890	+		11748	10976	6850	6892	11331	11331					-0.031209470126214
GEVPLTPT	8	Unmodified	_GEVPLTPT_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	HCT116MG_D190212_S1	1	813.434814453125	1	813.435261	812.427984	0.93541	0.0007609	-0.3477	-0.00028283	0.58771	0.00047806	813.4348381247067	33.53	0.36304	33.53	33.348	33.711	0					9	6	2	0	0	0	0.15965	1	12418	12418		81.613	3.6287	1	10568000			11749	4465	6851	6893	11332	11332					0.014267182234789288
GEVPLTPT	8	Unmodified	_GEVPLTPT_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	HCT116MG_D190212_S3	3	813.43603515625	1	813.435261	812.427984	0.99031	0.00080555	-0.38128	-0.00031015	0.60902	0.0004954	813.434989570613	33.893	0.67582	33.599	33.352	34.027	-0.29419					21	12	3	0	0	0	0.15965	1	12439	12439		81.613	7.1903	1	8790500			11750	4465	6851	6893	11333	11333					0.014267182234789288
GEVPLTPT	8	Unmodified	_GEVPLTPT_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	HCT116MG_D190212_S4	4	813.4359130859375	1	813.435261	812.427984	0.99876	0.00081243	-0.21732	-0.00017677	0.78145	0.00063566	813.435074058633	34.006	0.51907	33.621	33.362	33.881	-0.38426					15	9	2	0	0	0	0.15965	1	12377	12377		81.613	7.1903	1	6468500			11751	4465	6851	6893	11334	11334					0.014267182234789288
GEVRGSPPEPT	11	Unmodified	_GEVRGSPPEPT_					0	0	0			REV__ENSG00000185905|ENST00000329410|C16orf54	REV__ENSG00000185905|ENST00000329410|C16orf54	MULTI-MSMS	HCT116MG_D190212_S3	3	563.280517578125	2	563.280377	1124.5462	0.15107	8.5097E-05	0.26393	0.00014867	0.41501	0.00023376	563.2804702694226	17.752	0.52018	17.834	17.638	18.158	0.081356					19	9	4	0	0	0	0.53802	1	5987	5987		42.312	1.5876	1	14960000	+		11752	13862	6852	6894	11335	11335					-0.011089542586660173
GEYEAGSG	8	Unmodified	_GEYEAGSG_					0	0	0			REV__ENST00000558575.1_1_14:75761110-75762846:+|nuORF	REV__ENST00000558575.1_1_14:75761110-75762846:+|nuORF	MSMS	HCT116MG_D190212_S3	3	385.1534118652344	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5311	1	3.5675	3.0675	4.0675	0.036387								0	0	0	0.8837	1	1065	1065		0.69038	0	1		+		11753	16474	6853	6895	11336	11336					-0.10080181638124941
GEYEWVHKP	9	Unmodified	_GEYEWVHKP_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	HCT116MG_D190212_S1	1	382.1854553222656	3	382.185579	1143.53491	-0.13328	-5.0937E-05	0.2475	9.4592E-05	0.11422	4.3654E-05	382.18562824815353	32.717	1.1279	32.717	31.857	32.985	0					48	21	3	0	0	0	0.069315	3	12021	11798;11924;12021		51.415	37.8	1	61570000			11754	2557	6854	6896	11337;11338;11339	11339					-0.03111731562148634
GEYEWVHKP	9	Unmodified	_GEYEWVHKP_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	HCT116MG_D190212_S1	1	572.7750854492188	2	572.774731	1143.53491	0.3286	0.00018821	0.45505	0.00026064	0.78365	0.00044885	572.7749133425632	32.67	1.2319	32.67	31.857	33.089	0					62	23	4	0	0	0	0.0035183	3	12062	11838;12062;12097		171.09	130.85	1	172570000			11755	2557	6854	6896	11340;11341;11342	11341					-0.03111731562148634
GEYEWVHKP	9	Unmodified	_GEYEWVHKP_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	HCT116MG_D190212_S2	2	573.2669677734375	2	572.774731	1143.53491	0.42578	0.00024388	0.25859	0.00014811	0.68437	0.00039199	572.7748092621578	32.822	1.35	32.611	31.65	33	-0.21135					86	25	5	0	0	0	0.0035381	3	12019	11891;12019;12116		171.09	125.19	1	1263600000			11756	2557	6854	6896	11343;11344;11345	11344					-0.03111731562148634
GEYEWVHKP	9	Unmodified	_GEYEWVHKP_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	HCT116MG_D190212_S2	2	382.18548583984375	3	382.185579	1143.53491	-0.045245	-1.7292E-05	0.2071	7.9152E-05	0.16186	6.186E-05	382.18558890627116	32.841	1.1427	32.63	31.702	32.845	-0.21135					64	21	4	0	0	0	0.19461	2	11960	11960;12200		38.615	31.984	1	501750000			11757	2557	6854	6896	11346;11347	11346					-0.03111731562148634
GEYEWVHKP	9	Unmodified	_GEYEWVHKP_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	HCT116MG_D190212_S2	2	1144.5435791015625	1	1144.54219	1143.53491	0.61493	0.00070382	-0.24364	-0.00027886	0.37129	0.00042496	1144.5420775923226	32.843	0.67416	32.632	32.065	32.739	-0.21135					20	12	2	0	0	0	0.030039	2	12112	12046;12112		86.332	65.917	1	36769000			11758	2557	6854	6896	11348;11349	11349					-0.03111731562148634
GEYEWVHKP	9	Unmodified	_GEYEWVHKP_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	HCT116MG_D190212_S3	3	382.1859436035156	3	382.185579	1143.53491	0.11029	4.2152E-05	0.47427	0.00018126	0.58456	0.00022341	382.1857118042088	33.127	1.067	32.842	31.987	33.054	-0.2851					87	40	3	0	0	0	0.19461	2	12135	11932;12135		38.615	30.669	1	71637000			11759	2557	6854	6896	11350;11351	11351					-0.03111731562148634
GEYEWVHKP	9	Unmodified	_GEYEWVHKP_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	HCT116MG_D190212_S4	4	572.7755126953125	2	572.774731	1143.53491	0.73017	0.00041823	0.49337	0.00028259	1.2235	0.00070082	572.7749481732525	33.2	0.84077	32.818	32.102	32.943	-0.38223					71	48	2	0	0	0	0.012596	1	12079	12079		106.94	83.792	1	47984000			11760	2557	6854	6896	11352	11352					-0.03111731562148634
GEYEWVHKP	9	Unmodified	_GEYEWVHKP_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MSMS	HCT116MG_D190212_S4	4	382.18548583984375	3	382.185579	1143.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.794	1	32.414	31.914	32.914	-0.37924								0	0	0	0.46109	1	11958	11958		28.495	14.089	1				11761	2557	6854	6896	11353	11353					-0.03111731562148634
GEYEWVHKP	9	Unmodified	_GEYEWVHKP_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MATCH	HCT116MG_D190212_S4	4		3	382.185579	1143.53491	0.24636	9.4154E-05	0.27259	0.00010418	0.51895	0.00019833	382.18563164198963	33.199	0.163	32.816	32.726	32.889	-0.38223	0.065267	-5.1893E-05	NaN	51.415	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25649000			11762	2557	6854	6896							-0.03111731562148634
GEYGGWYKA	9	Unmodified	_GEYGGWYKA_					0	0	0		KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant;nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant	KLC1|p.N469Tfs*18|1|0.15|ENSG00000126214|chr14:103677436-103677436|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.7802734375	2	515.735074	1029.4556	0.097359	5.0211E-05	-0.47049	-0.00024265	-0.37313	-0.00019243	515.7351304198385	37.257	0.20625	37.154	37.026	37.232	-0.10318					5	3	2	0	0	0	0.20889	1	13927	13927		24.021	8.1734	1	11030000			11763	2926	6855	6897	11354	11354					-0.05795378516290839
GEYLVTCPGPS	11	Unmodified	_GEYLVTCPGPS_					0	0	0			REV__nc|ENSG00000204653|A6ND91-2|ASPDH	REV__nc|ENSG00000204653|A6ND91-2|ASPDH	MULTI-MSMS	HCT116MG_D190212_S4	4	561.7581176757812	2	561.760432	1121.50631	0.19331	0.0001086	0.41896	0.00023536	0.61228	0.00034395	561.7602776094351	19.484	1.9137	19.297	18.141	20.055	-0.18674					79	36	3	0	0	0	0.55933	1	6471	6471		39.95	5.548	1	16646000	+		11764	14204	6856	6898	11355	11355					-0.04958217253602015
GEYWDDQEFWN	11	Unmodified	_GEYWDDQEFWN_					0	0	0			REV__nc|ENSG00000150627|Q8IZU2|WDR17	REV__nc|ENSG00000150627|Q8IZU2|WDR17	MSMS	HCT116MG_D190212_S1	1	496.8612060546875	3	496.861601	1487.56297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.389	1	11.389	10.889	11.889	0								0	0	0	0.96192	1	3580	3580		0.08335	0.08335	1		+		11765	17161	6857	6899	11356	11356					-0.16130498163374796
GFAAGHCG	8	Unmodified	_GFAAGHCG_					0	0	0		sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	MSMS	HCT116MG_D190212_S4	4	360.1498718261719	2	360.150123	718.285694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.914	1	12.749	12.249	13.249	-0.16496								0	0	0	0.8837	1	4028	4028		0	0	1				11766	18204	6858	6900	11357	11357					-0.0847177299968962
GFAANCKP	8	Unmodified	_GFAANCKP_					0	0	0			REV__nc|ENSG00000103549|O75150-4|RNF40;REV__ENSG00000155827|ENST00000389120|RNF20	REV__ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	HCT116MG_D190212_S1	1	404.23919677734375	2	404.194531	806.374509	-0.17445	-7.0511E-05	0.12884	5.2078E-05	-0.045604	-1.8433E-05	404.19440068457703	25.445	0.31216	25.445	25.249	25.561	0					7	5	2	0	0	0	0.31111	1	9089	9089		2.5775	0	1	2437300	+		11767	12710;11196	6859	6901	11358	11358					-0.036423577600317
GFDDETEDQQ	10	Unmodified	_GFDDETEDQQ_					0	0	0		nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	MULTI-MSMS	HCT116MG_D190212_S2	2	591.813720703125	2	592.222922	1182.43129	0.59926	0.0003549	1.0873	0.00064395	1.6866	0.00099885	592.2237962390288	25.425	0.26061	25.056	24.874	25.135	-0.36914					6	4	2	0	0	0	0.86339	1	9111	9111		6.7232	1.9672	1	2865300			11768	1406	6860	6902	11359	11359					-0.15262728251150293
GFESGEVT	8	Unmodified	_GFESGEVT_					0	0	0		ENSG00000102104|ENST00000379984|RS1	ENSG00000102104|ENST00000379984|RS1	ENSG00000102104|ENST00000379984|RS1	MSMS	HCT116MG_D190212_S3	3	413.1860656738281	2	413.184883	824.355213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.499	1	57.225	56.725	57.725	-0.27434								0	0	0	0.8837	1	21853	21853		9.3474	0	1				11769	1825	6861	6903	11360	11360					-0.06399035569950229
GFGGAFPA	8	Unmodified	_GFGGAFPA_					0	0	0		nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	MULTI-MSMS	HCT116MG_D190212_S1	1	723.3451538085938	1	723.346052	722.338775	-0.11651	-8.428E-05	-0.0095046	-6.8751E-06	-0.12602	-9.1155E-05	723.3459009809743	38.253	0.26055	38.253	38.071	38.332	0					8	4	2	0	0	0	0.84415	1	14324	14324		6.3541	1.5981	1	13522000			11770	4682	6862	6904	11361	11361					-0.0335007194538548
GFGGAGFQ	8	Unmodified	_GFGGAGFQ_					0	0	0			REV__CON__Q922U2	REV__CON__Q922U2	MULTI-SECPEP	HCT116MG_D190212_S1	1	370.1625671386719	2	370.671746	739.328939	-0.01301	-4.8224E-06	-0.14904	-5.5246E-05	-0.16205	-6.0068E-05	370.6717541379156	34.883	0.20823	34.883	34.753	34.961	0					5	3	2	0	0	0	0.33574	1	12984	12984		0	0	1	5262500	+	+	11771	10277	6863	6905	11362	11362					-0.05115259950764539
GFGKSANV	8	Unmodified	_GFGKSANV_					0	0	0			REV__nc|ENSG00000177575|Q86VB7-4|CD163	REV__nc|ENSG00000177575|Q86VB7-4|CD163	MULTI-MSMS	HCT116MG_D190212_S2	2	390.2060852050781	2	390.205953	778.397353	0.15304	5.9717E-05	0.070084	2.7347E-05	0.22312	8.7064E-05	390.205976005762	36.691	0.25865	36.576	36.395	36.653	-0.11478					8	4	2	0	0	0	0.79834	1	13747	13747		11.64	1.4569	1	15971000	+		11772	17226	6864	6906	11363	11363					-0.000710153709064798
GFGSEMRRLH	10	Unmodified	_GFGSEMRRLH_					0	0	0			REV__ENSG00000187391|ENST00000354212|MAGI2	REV__ENSG00000187391|ENST00000354212|MAGI2	MULTI-MSMS	HCT116MG_D190212_S2	2	595.2986450195312	2	595.298381	1188.58221	0.60073	0.00035761	-0.51798	-0.00030835	0.082743	4.9257E-05	595.2982130744687	40.097	0.20806	40.024	39.894	40.102	-0.072838					6	3	2	0	0	0	0.64004	1	15138	15138		25.399	1.3787	1	18772000	+		11773	13922	6865	6907	11364	11364					-0.0045377556280072895
GFGSLWAVSA	10	Unmodified	_GFGSLWAVSA_					0	0	0			REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	MSMS	HCT116MG_D190212_S4	4	497.7512512207031	2	497.753267	993.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.694	1	31.322	30.822	31.822	-0.37168								0	0	0	0.4096	1	11513	11513		52.268	2.7141	1		+		11774	17204	6866	6908	11365	11365					-0.005025016195872922
GFHSANPQ	8	Unmodified	_GFHSANPQ_					0	0	0			REV__ENSG00000142700|ENST00000404795|DMRTA2	REV__ENSG00000142700|ENST00000404795|DMRTA2	MSMS	HCT116MG_D190212_S3	3	429.08868408203125	2	429.198659	856.382765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.768	1	29.531	29.031	30.031	-0.23655								0	0	0	0.8837	1	10827	10827		4.3292	0	1		+		11775	12366	6867	6909	11366	11366					-0.0511708751905644
GFLFMLPQL	9	Unmodified	_GFLFMLPQL_					0	0	0		ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	ENST00000511268.6_1_5:1320729-1323921:-|nuORF	ENST00000511268.6_1_5:1320729-1323921:-|nuORF	MSMS	HCT116MG_D190212_S1	1	355.8646545410156	3	355.864901	1064.57287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.566	1	17.566	17.066	18.066	0								0	0	0	0.76777	1	5986	5986		8.7454	1.1365	1				11776	1044	6868	6910	11367	11367					0.043170630989834535
GFLGREDKQFL	11	Unmodified	_GFLGREDKQFL_					0	0	0			REV__ENST00000347055.3_1_2:88327933-88327990:-|nuORF	REV__ENST00000347055.3_1_2:88327933-88327990:-|nuORF	MSMS	HCT116MG_D190212_S4	4	655.3472290039062	2	655.348594	1308.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.128	1	56.827	56.327	57.327	-0.3004								0	0	0	0.95581	1	21434	21434		3.2813	0.28607	1		+		11777	15015	6869	6911	11368	11368					0.04064159971835579
GFLIIFSQY	9	Unmodified	_GFLIIFSQY_					0	0	0		ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	MULTI-MSMS	HCT116MG_D190212_S2	2	544.296142578125	2	544.294768	1086.57498	0.41488	0.00022582	2.0442	0.0011126	2.4591	0.0013385	544.2958125616585	26.577	0.20767	26.215	26.128	26.335	-0.36164					5	3	2	0	0	0	0.43775	1	9655	9655		20.454	2.0805	1	5217500			11778	6684	6870	6912	11369	11369					0.03515815108426068
GFLTLRNLQPL	11	Unmodified	_GFLTLRNLQPL_					0	0	0			REV__ENSG00000172061|ENST00000347624|LRRC15	REV__ENSG00000172061|ENST00000347624|LRRC15	MSMS	HCT116MG_D190212_S4	4	636.3790283203125	2	636.377155	1270.73976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.956	1	41.58	41.08	42.08	-0.37637								0	0	0	0.95581	1	15402	15402		3.2813	0.28607	1		+		11779	13372	6871	6913	11370	11370					0.11521627248225741
GFPDLEVP	8	Unmodified	_GFPDLEVP_					0	0	0			REV__nc|ENSG00000204113|Q5H9B9|BMP2KL	REV__nc|ENSG00000204113|Q5H9B9|BMP2KL	MULTI-MSMS	HCT116MG_D190212_S2	2	873.4359130859375	1	873.435261	872.427984	0.87245	0.00076203	-0.21688	-0.00018943	0.65558	0.0005726	873.4350351780525	54.513	0.3054	54.324	54.15	54.456	-0.1894					13	5	3	0	0	0	0.23352	1	20983	20983		67.035	67.035	1	95934000	+		11780	12239	6872	6914	11371	11371					-0.013332817765217442
GFPFLKGAHF	10	Unmodified	_GFPFLKGAHF_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MSMS	HCT116MG_D190212_S4	4	374.2021789550781	3	374.202793	1119.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.664	1	23.416	22.916	23.916	-0.24775								0	0	0	0.96183	1	8297	8297		2.086	1.0145	1		+		11781	10802	6873	6915	11372	11372					0.0315405692240347
GFPGLSFLIF	10	Unmodified	_GFPGLSFLIF_					0	0	0		ENST00000331343.11_1_21:46702336-46705691:-|nuORF	ENST00000331343.11_1_21:46702336-46705691:-|nuORF	ENST00000331343.11_1_21:46702336-46705691:-|nuORF	MSMS	HCT116MG_D190212_S2	2	549.3031005859375	2	549.305136	1096.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.344	1	56.161	55.661	56.661	-0.18261								0	0	0	0.92272	1	21739	21739		10.824	2.9138	1				11782	7159	6874	6916	11373	11373					0.05128405488062526
GFPSLSSS	8	Unmodified	_GFPSLSSS_					0	0	0		nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-SECPEP	HCT116MG_D190212_S3	3	391.2841491699219	2	391.189968	780.365384	-0.056483	-2.2096E-05	-2.8142	-0.0011009	-2.8707	-0.001123	391.1887929787492	47.09	0.31258	46.776	46.646	46.959	-0.31405					6	5	2	0	0	0	0.33574	1	17685	17685		0.79363	0.10326	1	4236600			11783	5098	6875	6917	11374	11374					-0.033584278447051474
GFRNVIIGPA	10	Unmodified	_GFRNVIIGPA_					0	0	0		ENST00000469269.1_1_20:36758623-36761344:-|nuORF;ENSG00000198959|ENST00000361475|TGM2	ENST00000469269.1_1_20:36758623-36761344:-|nuORF	ENST00000469269.1_1_20:36758623-36761344:-|nuORF	MSMS	HCT116MG_D190212_S1	1	522.7879638671875	2	522.303458	1042.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.238	1	25.238	24.738	25.738	0								0	0	0	0.93576	1	9069	9069		7.9102	0	1				11784	6307	6876	6918	11375	11375					0.07277155434076121
GFRRERRRHK	10	Unmodified	_GFRRERRRHK_					0	0	0			REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF	REV__ENST00000533079.5_1_11:64955425-64973207:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	699.4091186523438	2	699.408509	1396.80247	0.70232	0.00049121	0.31012	0.0002169	1.0124	0.00070811	699.4084565802199	51.95	0.93022	51.95	51.194	52.125	0					32	17	3	0	0	0	0.88823	1	19620	19620		1.4819	0.28856	1	63728000	+		11785	10539	6877	6919	11376	11376					0.11993630879624106
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	377.1483154296875	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.878	1	61.878	61.378	62.378	0								0	0	0	0.8837	1	23883	23883		2.5775	0	1		+		11786	12881	6878	6920	11377	11377					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	377.14813232421875	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.437	1	62.437	61.937	62.937	0								0	0	0	0.8837	1	24109	24109		2.5775	0	1		+		11787	12881	6878	6920	11378	11378					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	377.1481018066406	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.001	1	63.001	62.501	63.501	0								0	0	0	0.8837	1	24337	24337		2.5775	0	1		+		11788	12881	6878	6920	11379	11379					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	377.14813232421875	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.541	1	63.541	63.041	64.041	0								0	0	0	0.8837	1	24546	24546		2.5775	0	1		+		11789	12881	6878	6920	11380	11380					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	377.1480712890625	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.05	1	64.05	63.55	64.55	0								0	0	0	0.8837	1	24727	24727		2.5775	0	1		+		11790	12881	6878	6920	11381	11381					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	377.14825439453125	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.559	1	64.559	64.059	65.059	0								0	0	0	0.8837	1	24896	24896		2.5775	0	1		+		11791	12881	6878	6920	11382	11382					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.14825439453125	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.38931	1	0.38537	-0.11463	0.88537	-0.0039395								0	0	0	0.8837	1	135	135		2.5775	0	1		+		11792	12881	6878	6920	11383	11383					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1481628417969	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.94209	1	0.93583	0.43583	1.4358	-0.00626								0	0	0	0.8837	1	309	309		2.5775	0	1		+		11793	12881	6878	6920	11384	11384					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.14825439453125	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0537	1	2.0294	1.5294	2.5294	-0.024288								0	0	0	0.8837	1	665	665		2.5775	0	1		+		11794	12881	6878	6920	11385	11385					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1481018066406	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6726	1	2.6322	2.1322	3.1322	-0.040353								0	0	0	0.8837	1	856	856		2.5775	0	1		+		11795	12881	6878	6920	11386	11386					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.14813232421875	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2076	1	3.1672	2.6672	3.6672	-0.040353								0	0	0	0.8837	1	1026	1026		2.5775	0	1		+		11796	12881	6878	6920	11387	11387					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.14776611328125	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.088	1	3.9989	3.4989	4.4989	-0.089082								0	0	0	0.8837	1	1293	1293		2.5775	0	1		+		11797	12881	6878	6920	11388	11388					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.14825439453125	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.1815	1	5.0628	4.5628	5.5628	-0.11871								0	0	0	0.8837	1	1635	1635		2.5775	0	1		+		11798	12881	6878	6920	11389	11389					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1478271484375	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.749	1	5.6008	5.1008	6.1008	-0.14816								0	0	0	0.8837	1	1820	1820		2.5775	0	1		+		11799	12881	6878	6920	11390	11390					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.14788818359375	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2773	1	6.1027	5.6027	6.6027	-0.17458								0	0	0	0.8837	1	1977	1977		2.5775	0	1		+		11800	12881	6878	6920	11391	11391					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1479187011719	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8278	1	6.6306	6.1306	7.1306	-0.19725								0	0	0	0.8837	1	2148	2148		2.5775	0	1		+		11801	12881	6878	6920	11392	11392					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1482238769531	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3717	1	7.1559	6.6559	7.6559	-0.21581								0	0	0	0.8837	1	2311	2311		2.5775	0	1		+		11802	12881	6878	6920	11393	11393					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.14825439453125	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.2303	1	7.9991	7.4991	8.4991	-0.23116								0	0	0	0.8837	1	2572	2572		2.5775	0	1		+		11803	12881	6878	6920	11394	11394					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1484069824219	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3627	1	9.1076	8.6076	9.6076	-0.25508								0	0	0	0.8837	1	2923	2923		2.5775	0	1		+		11804	12881	6878	6920	11395	11395					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1483154296875	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.19	1	9.9254	9.4254	10.425	-0.26472								0	0	0	0.8837	1	3211	3211		2.5775	0	1		+		11805	12881	6878	6920	11396	11396					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1479187011719	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.27	1	10.988	10.488	11.488	-0.28186								0	0	0	0.8837	1	3621	3621		5.7604	3.1829	1		+		11806	12881	6878	6920	11397	11397					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1480712890625	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.412	1	12.115	11.615	12.615	-0.29721								0	0	0	0.8837	1	4056	4056		2.5775	0	1		+		11807	12881	6878	6920	11398	11398					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.1478576660156	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.152	1	12.847	12.347	13.347	-0.30453								0	0	0	0.8837	1	4304	4304		2.5775	0	1		+		11808	12881	6878	6920	11399	11399					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.14825439453125	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.764	1	63.641	63.141	64.141	-0.12264								0	0	0	0.8837	1	24712	24712		2.5775	0	1		+		11809	12881	6878	6920	11400	11400					-0.10610916302016449
GFSGPECG	8	Unmodified	_GFSGPECG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	377.14813232421875	2	377.147246	752.27994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.275	1	64.159	63.659	64.659	-0.11585								0	0	0	0.8837	1	24883	24883		2.5775	0	1		+		11810	12881	6878	6920	11401	11401					-0.10610916302016449
GFSRTLKS	8	Unmodified	_GFSRTLKS_					0	0	0		ENSG00000104320|ENST00000265433|NBN;NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant;ENST00000523444.1_1_8:90992965-90993727:-|nuORF	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MSMS	HCT116MG_D190212_S4	4	448.2540283203125	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.862	1	51.517	51.017	52.017	-0.34538								0	0	0	0.8837	1	19315	19315		4.3292	0	1				11811	1924	6879	6921	11402	11402					0.04084918100295454
GFTMTTEVP	9	Unmodified	_GFTMTTEVP_					0	0	0		ENSG00000149782|ENST00000279230|PLCB3;PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant;nc|ENSG00000149782|Q01970-2|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	MSMS	HCT116MG_D190212_S3	3	491.7299499511719	2	491.731143	981.447733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.793	1	45.482	44.982	45.982	-0.31094								0	0	0	0.76694	1	17156	17156		11.64	1.4569	1				11812	4072	6880	6922	11403	11403					-0.04373273828082347
GFWVCGRY	8	Unmodified	_GFWVCGRY_					0	0	0		ENST00000584053.1_1_17:37896424-37899062:+|nuORF;ENST00000584819.5_1_17:37894608-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	494.2294616699219	2	494.228905	986.443257	0.39244	0.00019396	0.49428	0.00024429	0.88672	0.00043824	494.22906133876086	31.674	0.41692	31.674	31.44	31.857	0					15	7	3	0	0	0	0.71835	1	11671	11671		20.871	20.871	1	14823000			11813	8973	6881	6923	11404	11404					-0.05050693460327693
GFWVCGRY	8	Unmodified	_GFWVCGRY_					0	0	0		ENST00000584053.1_1_17:37896424-37899062:+|nuORF;ENST00000584819.5_1_17:37894608-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2289733886719	2	494.228905	986.443257	0.498	0.00024613	0.086089	4.2548E-05	0.58409	0.00028867	494.22910316365426	31.887	0.56974	31.639	31.354	31.924	-0.24883					17	10	3	0	0	0	0.71835	1	11768	11768		20.871	3.9289	1	28818000			11814	8973	6881	6923	11405	11405					-0.05050693460327693
GFWVCGRY	8	Unmodified	_GFWVCGRY_					0	0	0		ENST00000584053.1_1_17:37896424-37899062:+|nuORF;ENST00000584819.5_1_17:37894608-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	494.228905	986.443257	0.39244	0.00019396	0.49428	0.00024429	0.88672	0.00043824	494.22906133876086	31.674	0.41692	31.674	31.44	31.857	0	-0.037753	-0.00011993	NaN	20.871	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14823000			11815	8973	6881	6923							-0.05050693460327693
GFWVCGRY	8	Unmodified	_GFWVCGRY_					0	0	0		ENST00000584053.1_1_17:37896424-37899062:+|nuORF;ENST00000584819.5_1_17:37894608-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	494.228905	986.443257	0.498	0.00024613	0.086089	4.2548E-05	0.58409	0.00028867	494.22910316365426	31.887	0.56974	31.639	31.354	31.924	-0.24883	-0.073546	-0.00052341	NaN	20.871	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28818000			11816	8973	6881	6923							-0.05050693460327693
GFWVCGRY	8	Unmodified	_GFWVCGRY_					0	0	0		ENST00000584053.1_1_17:37896424-37899062:+|nuORF;ENST00000584819.5_1_17:37894608-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	494.228905	986.443257	0.16903	8.3537E-05	0.85874	0.00042441	1.0278	0.00050795	494.22931306773455	32.199	0.51897	31.823	31.59	32.109	-0.37529	0.1113	0.00024032	NaN	20.871	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20122000			11817	8973	6881	6923							-0.05050693460327693
GGANAGDG	8	Unmodified	_GGANAGDG_					0	0	0			REV__ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	REV__ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	618.2484741210938	1	618.247794	617.240518	-0.1051	-6.4976E-05	1.4056	0.00086901	1.3005	0.00080404	618.2487288513191	15.113	0.25118	14.952	14.825	15.076	-0.16089					6	4	2	0	0	0	0.87576	1	4869	4869		0.79363	0	1	817350	+		11818	13660	6882	6924	11406	11406					-0.0834130026122466
GGCCCCCCW	9	Unmodified	_GGCCCCCCW_					0	0	0		MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant	MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant	MMEL1|p.L29Cfs*8|1|0.15|ENSG00000142606|chr1:2629401-2629401|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	469.42535400390625	2	469.101232	936.187912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.731	1	11.557	11.057	12.057	-0.17441								0	0	0	0.77025	1	3625	3625		0	0	1				11819	9333	6883	6925	11407	11407					-0.28273448569882476
GGCGEAMF	8	Unmodified	_GGCGEAMF_					0	0	0			REV__ENSG00000213699|ENST00000344420|SLC35F6	REV__ENSG00000213699|ENST00000344420|SLC35F6	MULTI-MSMS	HCT116MG_D190212_S1	1	771.2806396484375	1	771.280022	770.272746	0.76836	0.00059262	-0.27139	-0.00020932	0.49697	0.00038331	771.2797884424837	47.518	0.19997	47.518	47.395	47.595	0					6	3	2	0	0	0	0.71835	1	18085	18085		20.871	10.688	1	17224000	+		11820	14259	6884	6926	11408	11408					-0.12157972174099996
GGDRSSSH	8	Unmodified	_GGDRSSSH_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	802.3446655273438	1	802.34382	801.336543	0.87153	0.00069927	0.15614	0.00012528	1.0277	0.00082455	802.3439278395747	54.927	0.30697	54.739	54.56	54.867	-0.18797					9	5	2	0	0	0	0.86564	1	21167	21167		2.5775	0.27475	1	57041000			11821	8561	6885	6927	11409	11409					-0.07207152421131013
GGEFGGKK	8	Unmodified	_GGEFGGKK_					0	0	0			REV__nc|ENSG00000136636|Q9Y597-3|KCTD3	REV__nc|ENSG00000136636|Q9Y597-3|KCTD3	MULTI-MSMS	HCT116MG_D190212_S2	2	390.2055969238281	2	390.205953	778.397353	-0.12613	-4.9218E-05	-0.51761	-0.00020197	-0.64374	-0.00025119	390.2056598335566	30.612	0.20555	30.334	30.239	30.445	-0.27833					7	3	3	0	0	0	0.62424	1	11288	11288		30.225	15.643	1	16905000	+		11822	12139	6886	6928	11410	11410					-0.000710153709064798
GGELAALQ	8	Unmodified	_GGELAALQ_					0	0	0			REV__ENST00000470980.1_1_2:11696764-11702842:+|nuORF	REV__ENST00000470980.1_1_2:11696764-11702842:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	379.70550537109375	2	379.705786	757.397018	0.10962	4.1622E-05	-0.5126	-0.00019464	-0.40299	-0.00015302	379.7055033584807	27.695	0.20786	27.506	27.413	27.621	-0.18847					5	3	2	0	0	0	0.62424	1	10020	10020		30.225	0	1	5434300	+		11823	14011	6887	6929	11411	11411					0.00861564909223489
GGELLVGEGV	10	Unmodified	_GGELLVGEGV_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MSMS	HCT116MG_D190212_S2	2	929.493896484375	1	929.493838	928.486562	0.8925	0.00082957	-0.48272	-0.00044869	0.40977	0.00038088	929.4932681123569	52.921	0.25726	52.732	52.604	52.861	-0.18922					7	4	2	0	0	0	0.13038	1	20369	20369		68.081	0	1	14661000			11824	1991	6888	6930	11412	11412					0.019457747979686246
GGEMRALVPP	10	Unmodified	_GGEMRALVPP_					0	0	0		nc|ENSG00000010379|Q9NSD5-3|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	nc|ENSG00000010379|Q9NSD5-3|SLC6A13	MULTI-MSMS	HCT116MG_D190212_S3	3	513.7739868164062	2	513.773677	1025.5328	0.24862	0.00012773	0.5134	0.00026377	0.76203	0.00039151	513.7737009121964	42.321	0.78137	42.017	41.519	42.301	-0.30352					32	14	3	0	0	0	0.20843	1	15682	15682		58.679	7.049	1	15630000			11825	9367	6889	6931	11413	11413					0.021055164284007333
GGEVQWDGRQD	11	Unmodified	_GGEVQWDGRQD_					0	0	0		ENST00000314728.9_1_17:19239467-19239692:+|nuORF	ENST00000314728.9_1_17:19239467-19239692:+|nuORF	ENST00000314728.9_1_17:19239467-19239692:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	623.7757568359375	2	623.77599	1245.53743	0.50025	0.00031205	-0.13348	-8.3264E-05	0.36677	0.00022878	623.7757318092192	19.335	0.20864	18.966	18.836	19.044	-0.3695					8	3	3	0	0	0	0.58525	1	6705	6705		37.075	7.2341	1	22377000			11826	7079	6890	6932	11414	11414					-0.07551927895133304
GGEVQWDGRQD	11	Unmodified	_GGEVQWDGRQD_					0	0	0		ENST00000314728.9_1_17:19239467-19239692:+|nuORF	ENST00000314728.9_1_17:19239467-19239692:+|nuORF	ENST00000314728.9_1_17:19239467-19239692:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	623.77599	1245.53743	0.4304	0.00026847	-0.90305	-0.0005633	-0.47265	-0.00029483	623.7757947410731	18.441	0.15644	18.518	18.413	18.57	0.076334	-0.22363	-0.00074299	NaN	37.075	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1795200			11827	7079	6890	6932							-0.07551927895133304
GGFAAGHC	8	Unmodified	_GGFAAGHC_					0	0	0		sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	MSMS	HCT116MG_D190212_S3	3	360.1502380371094	2	360.150123	718.285694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.674	1	13.748	13.248	14.248	0.074899								0	0	0	0.8837	1	4352	4352		0	0	1				11828	18204	6891	6933	11415	11415					-0.08471772999700988
GGFSFWKYH	9	Unmodified	_GGFSFWKYH_					0	0	0		CATSPERD|p.S206Ffs*33|1|0.31|ENSG00000174898|chr19:5744462-5744463|-/T|frameshift_variant;ENSG00000174898|ENST00000381624|CATSPERD	CATSPERD|p.S206Ffs*33|1|0.31|ENSG00000174898|chr19:5744462-5744463|-/T|frameshift_variant	CATSPERD|p.S206Ffs*33|1|0.31|ENSG00000174898|chr19:5744462-5744463|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	376.847412109375	3	376.846898	1127.51886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.921	1	11.631	11.131	12.131	-0.28953								0	0	0	0.76967	1	3870	3870		1.0715	0	1				11829	336	6892	6934	11416	11416					-0.039793930083988016
GGFSTSDY	8	Unmodified	_GGFSTSDY_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000485120.1_1_16:2142046-2142571:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	HCT116MG_D190212_S3	3	833.3322143554688	1	833.331189	832.323913	0.87658	0.00073048	0.010737	8.9475E-06	0.88731	0.00073942	833.3311482186898	33.395	0.18874	33.105	33.011	33.2	-0.29013					5	3	2	0	0	0	0.36164	1	12270	12270		53.576	21.459	1	4910600			11830	864	6893	6935	11417	11417					-0.09895608604051631
GGGCCAGC	8	Unmodified	_GGGCCAGC_					0	0	0		ENST00000412433.5_1_22:45181943-45197960:+|nuORF	ENST00000412433.5_1_22:45181943-45197960:+|nuORF	ENST00000412433.5_1_22:45181943-45197960:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	627.1674194335938	1	627.168363	626.161087	-0.22403	-0.00014051	-1.2295	-0.00077112	-1.4536	-0.00091162	627.1674886232539	16.541	0.45086	16.374	16.261	16.712	-0.16664					11	8	2	0	0	0	0.88026	1	5446	5446		0	0	1	1348900			11831	7736	6894	6936	11418	11418					-0.16694729802884467
GGGCCAGC	8	Unmodified	_GGGCCAGC_					0	0	0		ENST00000412433.5_1_22:45181943-45197960:+|nuORF	ENST00000412433.5_1_22:45181943-45197960:+|nuORF	ENST00000412433.5_1_22:45181943-45197960:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	627.168363	626.161087	0.32806	0.00020575	-1.7041	-0.0010687	-1.376	-0.00086298	627.167200119155	16.594	0.26007	16.679	16.549	16.809	0.085424	0.15255	-0.00012899	NaN	0	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2022200			11832	7736	6894	6936							-0.16694729802884467
GGGFLAPF	8	Unmodified	_GGGFLAPF_					0	0	0		DLK2|p.P339Lfs*96|1|0.28|ENSG00000171462|chr6:43450675-43450675|G/-|frameshift_variant	DLK2|p.P339Lfs*96|1|0.28|ENSG00000171462|chr6:43450675-43450675|G/-|frameshift_variant	DLK2|p.P339Lfs*96|1|0.28|ENSG00000171462|chr6:43450675-43450675|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	383.1998596191406	2	383.200139	764.385725	-0.39621	-0.00015183	0.27221	0.00010431	-0.12401	-4.7519E-05	383.20013289004663	43.385	0.3099	43.312	43.097	43.407	-0.073376					9	5	2	0	0	0	0.84415	1	16447	16447		6.3541	0	1	36567000			11833	688	6895	6937	11419	11419					-0.005892123942430771
GGGGGCCCG	9	Unmodified	_GGGGGCCCG_					0	0	0		ENST00000431489.5_1_2:62932928-62934072:+|nuORF	ENST00000431489.5_1_2:62932928-62934072:+|nuORF	ENST00000431489.5_1_2:62932928-62934072:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	670.1514282226562	1	670.174177	669.1669	0.80907	0.00054222	-1.7618	-0.0011807	-0.95273	-0.00063849	670.174136511381	6.6347	0.34293	6.6347	6.5321	6.8751	0					45	32	2	0	0	0	0.77568	2	2014	2014;2025		0	0	1	448450			11834	7855	6896	6938	11420;11421	11420					-0.1809163129122453
GGGGGPGGW	9	Unmodified	_GGGGGPGGW_					0	0	0		nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687	nc|ENSG00000143373|Q8N1G0-2|ZNF687	nc|ENSG00000143373|Q8N1G0-2|ZNF687	MULTI-MSMS	HCT116MG_D190212_S2	2	701.30029296875	1	701.300164	700.292888	0.77405	0.00054284	-0.63232	-0.00044344	0.14174	9.94E-05	701.299568385698	41.028	0.36254	40.958	40.725	41.088	-0.069626					10	6	2	0	0	0	0.77568	1	15471	15471		0	0	1	143140000			11835	3804	6897	6939	11422	11422					-0.06924717127617441
GGGGGPGGW	9	Unmodified	_GGGGGPGGW_					0	0	0		nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687	nc|ENSG00000143373|Q8N1G0-2|ZNF687	nc|ENSG00000143373|Q8N1G0-2|ZNF687	MULTI-MSMS	HCT116MG_D190212_S3	3	701.3001708984375	1	701.300164	700.292888	0.79193	0.00055538	-0.72883	-0.00051113	0.063102	4.4253E-05	701.299348814711	41.221	0.26126	40.919	40.736	40.997	-0.30185					6	4	2	0	0	0	0.77568	1	15331	15331		0	0	1	6606700			11836	3804	6897	6939	11423	11423					-0.06924717127617441
GGGGGWHP	8	Unmodified	_GGGGGWHP_					0	0	0		ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	MULTI-MSMS	HCT116MG_D190212_S1	1	724.3153686523438	1	724.316148	723.308872	0.6799	0.00049246	-1.8567	-0.0013448	-1.1768	-0.00085236	724.3146798434922	29.958	0.31158	29.958	29.789	30.1	0					8	5	2	0	0	0	0.86388	1	10966	10966		2.8892	2.0956	1	7446100			11837	5682	6898	6940	11424	11424					-0.06385010890721787
GGGGHAGP	8	Unmodified	_GGGGHAGP_					0	0	0			REV__KCTD8|p.G198S|1|0.29|ENSG00000183783|chr4:44447932-44447932|C/T|missense_variant	REV__KCTD8|p.G198S|1|0.29|ENSG00000183783|chr4:44447932-44447932|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	609.2734985351562	1	609.273949	608.266673	0.47015	0.00028645	-0.78436	-0.00047789	-0.31422	-0.00019144	609.2735236887328	22.756	0.20852	22.756	22.637	22.845	0					5	3	2	0	0	0	0.87576	1	8083	8083		0.79363	0	1	5540200	+		11838	13781	6899	6941	11425	11425					-0.05312986299111344
GGGGRTAG	8	Unmodified	_GGGGRTAG_					0	0	0		RBFOX3|p.I247Sfs*77|1|0.35|ENSG00000167281|chr17:79097309-79097309|G/-|frameshift_variant	RBFOX3|p.I247Sfs*77|1|0.35|ENSG00000167281|chr17:79097309-79097309|G/-|frameshift_variant	RBFOX3|p.I247Sfs*77|1|0.35|ENSG00000167281|chr17:79097309-79097309|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	632.3119506835938	1	632.311063	631.303787	0.59842	0.00037839	1.7369	0.0010983	2.3354	0.0014767	632.3119366480657	48.948	0.31052	48.948	48.768	49.079	0					7	5	2	0	0	0	0.87635	1	18647	18647		0.69038	0	1	18143000			11839	9807	6900	6942	11426	11426					-0.026613147533339543
GGGGRTAG	8	Unmodified	_GGGGRTAG_					0	0	0		RBFOX3|p.I247Sfs*77|1|0.35|ENSG00000167281|chr17:79097309-79097309|G/-|frameshift_variant	RBFOX3|p.I247Sfs*77|1|0.35|ENSG00000167281|chr17:79097309-79097309|G/-|frameshift_variant	RBFOX3|p.I247Sfs*77|1|0.35|ENSG00000167281|chr17:79097309-79097309|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	632.311063	631.303787	0.36036	0.00022786	2.7192	0.0017194	3.0796	0.0019472	632.3125350806935	49.549	0.5224	49.233	48.975	49.497	-0.31596	0.14234	0.00027871	NaN	0.69038	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5415100			11840	9807	6900	6942							-0.026613147533339543
GGGGTCHR	8	Unmodified	_GGGGTCHR_					0	0	0		nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	MULTI-MSMS	HCT116MG_D190212_S3	3	744.3206787109375	1	744.320582	743.313305	0.51891	0.00038623	-0.69765	-0.00051928	-0.17874	-0.00013304	744.3200169466276	37.241	0.2081	36.939	36.821	37.029	-0.30137					5	3	2	0	0	0	0.86564	1	13807	13807		2.5775	0	1	2788100			11841	2059	6901	6943	11427	11427					-0.06861869739452686
GGGHGFPG	8	Unmodified	_GGGHGFPG_					0	0	0		nc|ENSG00000126456|Q14653-4|IRF3	nc|ENSG00000126456|Q14653-4|IRF3	nc|ENSG00000126456|Q14653-4|IRF3	MULTI-MSMS	HCT116MG_D190212_S2	2	685.3043823242188	1	685.305249	684.297973	0.47684	0.00032678	-1.4636	-0.001003	-0.98676	-0.00067623	685.3041012340256	24.802	0.41543	24.426	24.244	24.66	-0.37521					10	7	2	0	0	0	0.88026	1	8927	8927		0	0	1	28560000			11842	9448	6902	6944	11428	11428					-0.056804132649972416
GGGKTEVM	8	Unmodified	_GGGKTEVM_					0	0	0		nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000489492.1_1_2:27688276-27688770:-|nuORF;IFT172|p.W628Qfs*6|1|0.03|ENSG00000138002|chr2:27465466-27465467|-/CATTG|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	nc|ENSG00000138002|Q9UG01-2|IFT172	nc|ENSG00000138002|Q9UG01-2|IFT172	MULTI-MSMS	HCT116MG_D190212_S3	3	778.3778076171875	1	778.376365	777.369089	0.7225	0.00056238	1.0448	0.00081322	1.7673	0.0013756	778.377160588898	55.906	0.36685	55.618	55.465	55.832	-0.28773					9	6	2	0	0	0	0.77285	1	21254	21254		14.582	5.2343	1	2134800			11843	3523	6903	6945	11429	11429					-0.028500813425011984
GGGKTEVM	8	Unmodified	_GGGKTEVM_					0	0	0		nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000489492.1_1_2:27688276-27688770:-|nuORF;IFT172|p.W628Qfs*6|1|0.03|ENSG00000138002|chr2:27465466-27465467|-/CATTG|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	nc|ENSG00000138002|Q9UG01-2|IFT172	nc|ENSG00000138002|Q9UG01-2|IFT172	MULTI-MATCH	HCT116MG_D190212_S2	2		1	778.376365	777.369089	1.0056	0.00078275	0.89927	0.00069997	1.9049	0.0014827	778.3768562144038	55.786	0.20799	55.601	55.483	55.691	-0.18565	-0.0087965	-5.7991E-05	NaN	14.582	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9374700			11844	3523	6903	6945							-0.028500813425011984
GGGLEPYAGPQ	11	Unmodified	_GGGLEPYAGPQ_					0	0	0		ARID1A|p.H203Qfs*197|1|0.65|ENSG00000117713|chr1:26697010-26697011|-/A|frameshift_variant;ARID1A|p.Q766Pfs*51|1|0.37|ENSG00000117713|chr1:26762190-26762191|-/C|frameshift_variant;ARID1A|p.K1072Nfs*21|3|0.25|ENSG00000117713|chr1:26771131-26771131|A/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.A1077Gfs*28|1|0.28|ENSG00000117713|chr1:26771148-26771149|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A	ARID1A|p.H203Qfs*197|1|0.65|ENSG00000117713|chr1:26697010-26697011|-/A|frameshift_variant;ARID1A|p.Q766Pfs*51|1|0.37|ENSG00000117713|chr1:26762190-26762191|-/C|frameshift_variant	ARID1A|p.Q766Pfs*51|1|0.37|ENSG00000117713|chr1:26762190-26762191|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	523.2514038085938	2	523.251089	1044.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.123	1	28.782	28.282	29.282	-0.34059								0	0	0	0.78405	1	10503	10503		34.932	2.1464	1				11845	184;183	6904	6946	11430	11430					-0.032840108331583906
GGGPGVGY	8	Unmodified	_GGGPGVGY_					0	0	0		HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant;HDAC5|p.I932Hfs*24|1|0.42|ENSG00000108840|chr17:44080432-44080433|-/G|frameshift_variant;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5;nc|ENSG00000108840|Q9UQL6-2|HDAC5	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	663.309814453125	1	663.309666	662.30239	0.43436	0.00028811	0.039621	2.6281E-05	0.47398	0.0003144	663.3095444230512	19.593	0.46675	19.219	19.091	19.558	-0.37486					11	8	3	0	0	0	0.84415	1	6817	6817		6.3541	0	1	21135000			11846	2186	6905	6947	11431	11431					-0.04226948842097045
GGGPKHKI	8	Unmodified	_GGGPKHKI_					0	0	0			REV__nc|ENSG00000047849|P27816-5|MAP4	REV__nc|ENSG00000047849|P27816-5|MAP4	MSMS	HCT116MG_D190212_S1	1	397.2384033203125	2	397.237587	792.460622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.161	1	16.161	15.661	16.661	0								0	0	0	0.8837	1	5420	5420		5.2307	2.3415	1		+		11847	10605	6906	6948	11432	11432					0.05608970136984226
GGGQCMYG	8	Unmodified	_GGGQCMYG_					0	0	0			REV__ENST00000583752.1_1_17:38524217-38524595:+|nuORF	REV__ENST00000583752.1_1_17:38524217-38524595:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	772.5493774414062	1	772.275271	771.267995	1.0811	0.00083489	-2.7798	-0.0021468	-1.6987	-0.0013119	772.2736898072658	63.595	0.13572	63.357	63.316	63.452	-0.2389					12	7	2	0	0	0	0.87576	1	23992	23992		0.79363	0	1	276360	+		11848	16640	6907	6949	11433	11433					-0.12678856316870224
GGGQCMYG	8	Unmodified	_GGGQCMYG_					0	0	0			REV__ENST00000583752.1_1_17:38524217-38524595:+|nuORF	REV__ENST00000583752.1_1_17:38524217-38524595:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	772.275271	771.267995	0.85414	0.00065963	-3.3732	-0.002605	-2.519	-0.0019454	772.2732620718905	63.216	0.16381	63.001	62.862	63.026	-0.21454	-0.1777	-0.00013107	NaN	0.79363	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216090	+		11849	16640	6907	6949							-0.12678856316870224
GGGQCMYG	8	Unmodified	_GGGQCMYG_					0	0	0			REV__ENST00000583752.1_1_17:38524217-38524595:+|nuORF	REV__ENST00000583752.1_1_17:38524217-38524595:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	772.275271	771.267995	1.0811	0.00083489	-2.7798	-0.0021468	-1.6987	-0.0013119	772.2736898072658	63.595	0.13572	63.357	63.316	63.452	-0.2389	0.1777	0.00032716	NaN	0.79363	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276360	+		11850	16640	6907	6949							-0.12678856316870224
GGGSGSRG	8	Unmodified	_GGGSGSRG_					0	0	0		CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P35527	CON__P35527	MULTI-MSMS	HCT116MG_D190212_S2	2	634.2921752929688	1	634.290328	633.283051	0.52447	0.00033267	3.0003	0.0019031	3.5248	0.0022358	634.2922342113853	35.035	0.46576	34.877	34.657	35.123	-0.15834					12	8	2	0	0	0	0.87635	1	13092	13092		0.69038	0	1	12486000		+	11851	564	6908	6950	11434	11434					-0.04825905132986463
GGGSGSRG	8	Unmodified	_GGGSGSRG_					0	0	0		CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P35527	CON__P35527	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	634.290328	633.283051	0.78803	0.00049984	2.0769	0.0013173	2.8649	0.0018172	634.2914098135964	34.832	0.31203	34.832	34.701	35.013	0	-0.018757	-7.4731E-06	NaN	0.69038	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24418000		+	11852	564	6908	6950							-0.04825905132986463
GGGSGSRG	8	Unmodified	_GGGSGSRG_					0	0	0		CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P35527	CON__P35527	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	634.290328	633.283051	0.62491	0.00039638	1.9087	0.0012107	2.5337	0.0016071	634.2912707520148	35.178	0.57098	34.879	34.49	35.061	-0.29922	0.027963	-0.00011412	NaN	0.69038	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33306000		+	11853	564	6908	6950							-0.04825905132986463
GGGSGSRG	8	Unmodified	_GGGSGSRG_					0	0	0		CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P35527	CON__P35527	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	634.290328	633.283051	0.47584	0.00030182	2.2645	0.0014364	2.7403	0.0017382	634.2914775630986	35.202	0.6186	34.816	34.441	35.059	-0.38606	-0.034824	0.00011154	NaN	0.69038	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24747000		+	11854	564	6908	6950							-0.04825905132986463
GGGSRESP	8	Unmodified	_GGGSRESP_					0	0	0		ENST00000290219.10_2_21:34775397-34775781:+|nuORF	ENST00000290219.10_2_21:34775397-34775781:+|nuORF	ENST00000290219.10_2_21:34775397-34775781:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	746.3434448242188	1	746.342757	745.335481	0.63164	0.00047142	0.38331	0.00028608	1.0149	0.0007575	746.3427617302161	36.86	0.7818	36.86	36.312	37.094	0					33	14	3	0	0	0	0.85571	1	13822	13822		4.3292	1.7518	1	95997000			11855	6958	6909	6951	11435	11435					-0.04737366790050146
GGGVKVKA	8	Unmodified	_GGGVKVKA_					0	0	0		ENST00000490434.5_1_3:121554073-121554127:+|nuORF	ENST00000490434.5_1_3:121554073-121554127:+|nuORF	ENST00000490434.5_1_3:121554073-121554127:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	358.22650146484375	2	358.226688	714.438824	-0.2165	-7.7558E-05	-0.14833	-5.3137E-05	-0.36484	-0.00013069	358.2266049893995	18.032	0.20872	17.676	17.545	17.754	-0.35647					5	3	2	0	0	0	0.74206	1	6198	6198		18.135	4.6271	1	6956200			11856	8332	6910	6952	11436	11436					0.0701816538841058
GGHCYGCD	8	Unmodified	_GGHCYGCD_					0	0	0			REV__ENST00000371432.7_1_6:45390663-45399652:+|nuORF	REV__ENST00000371432.7_1_6:45390663-45399652:+|nuORF	MSMS	HCT116MG_D190212_S1	1	406.128173828125	2	406.128531	810.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.199	1	63.199	62.699	63.699	0								0	0	0	0.8837	1	24416	24416		0	0	1		+		11857	15165	6911	6953	11437	11437					-0.1702033083929564
GGHGRGCL	8	Unmodified	_GGHGRGCL_					0	0	0		ENST00000491449.5_1_22:50658476-50664613:-|nuORF	ENST00000491449.5_1_22:50658476-50664613:-|nuORF	ENST00000491449.5_1_22:50658476-50664613:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	757.7669067382812	1	756.356967	755.349691	0.50282	0.00038032	-0.67781	-0.00051267	-0.17499	-0.00013235	756.3563424109071	47.143	0.41499	46.829	46.646	47.061	-0.31405					13	7	2	0	0	0	0.86564	1	17765	17765		2.5775	0	1	20211000			11858	8344	6912	6954	11438	11438					-0.03776992842756499
GGHHCPCD	8	Unmodified	_GGHHCPCD_					0	0	0			REV__nc|ENSG00000157890|A6BM72-2|MEGF11	REV__nc|ENSG00000157890|A6BM72-2|MEGF11	MSMS	HCT116MG_D190212_S1	1	413.1416931152344	2	413.141972	824.269392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.922	1	63.922	63.422	64.422	0								0	0	0	0.8837	1	24683	24683		0	0	1		+		11859	17177	6913	6955	11439	11439					-0.1497722222811717
GGISFYSR	8	Unmodified	_GGISFYSR_					0	0	0		tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	443.2430114746094	2	443.72451	885.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.343	1	32.113	31.613	32.613	-0.23009								0	0	0	0.65638	1	11964	11964		34.102	1.9855	1				11860	18318	6914	6956	11440	11440					-0.012833438251504958
GGKAAGYS	8	Unmodified	_GGKAAGYS_					0	0	0			REV__CON__Q8VED5	REV__CON__Q8VED5	MULTI-MSMS	HCT116MG_D190212_S1	1	355.6770324707031	2	355.677028	709.339503	-0.10861	-3.8631E-05	-0.059505	-2.1165E-05	-0.16812	-5.9796E-05	355.67699278015203	24.961	0.20963	24.961	24.83	25.04	0					5	3	2	0	0	0	0.8672	1	8962	8962		2.3027	1.5091	1	6506400	+	+	11861	10276	6915	6957	11441	11441					-0.026792772963403877
GGKDKFLP	8	Unmodified	_GGKDKFLP_					0	0	0			REV__ENSG00000275700|ENST00000619387|AATF	REV__ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	HCT116MG_D190212_S1	1	431.24493408203125	2	431.245078	860.475603	0.09277	4.0006E-05	-0.10976	-4.7333E-05	-0.016988	-7.3262E-06	431.24495943759393	46.829	0.31139	46.829	46.647	46.958	0					7	5	2	0	0	0	0.76189	1	17813	17813		15.847	0	1	7735400	+		11862	14458	6916	6958	11442	11442					0.03978417214318597
GGKLPPAA	8	Unmodified	_GGKLPPAA_					0	0	0		AXIN2|p.L499Pfs*129|1|0.24|ENSG00000168646|chr17:65537540-65537541|-/G|frameshift_variant;AXIN2|p.L688*|1|0.4|ENSG00000168646|chr17:65536399-65536399|G/-|frameshift_variant;AXIN2|p.G665Afs*24|4|0.35|ENSG00000168646|chr17:65536467-65536467|C/-|frameshift_variant;AXIN2|p.N666Qfs*41|2|0.51|ENSG00000168646|chr17:65536466-65536467|-/C|frameshift_variant;AXIN2|p.L688Pfs*19|1|0.25|ENSG00000168646|chr17:65536398-65536399|-/G|frameshift_variant;ENSG00000168646|ENST00000307078|AXIN2	AXIN2|p.L499Pfs*129|1|0.24|ENSG00000168646|chr17:65537540-65537541|-/G|frameshift_variant	AXIN2|p.L499Pfs*129|1|0.24|ENSG00000168646|chr17:65537540-65537541|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	355.7119140625	2	355.713414	709.412274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.277	1	45.277	44.777	45.777	0								0	0	0	0.8837	1	17150	17150		0.79363	0	1				11863	239	6917	6959	11443	11443					0.04594476497072719
GGKLPPAA	8	Unmodified	_GGKLPPAA_					0	0	0		AXIN2|p.L499Pfs*129|1|0.24|ENSG00000168646|chr17:65537540-65537541|-/G|frameshift_variant;AXIN2|p.L688*|1|0.4|ENSG00000168646|chr17:65536399-65536399|G/-|frameshift_variant;AXIN2|p.G665Afs*24|4|0.35|ENSG00000168646|chr17:65536467-65536467|C/-|frameshift_variant;AXIN2|p.N666Qfs*41|2|0.51|ENSG00000168646|chr17:65536466-65536467|-/C|frameshift_variant;AXIN2|p.L688Pfs*19|1|0.25|ENSG00000168646|chr17:65536398-65536399|-/G|frameshift_variant;ENSG00000168646|ENST00000307078|AXIN2	AXIN2|p.L499Pfs*129|1|0.24|ENSG00000168646|chr17:65537540-65537541|-/G|frameshift_variant	AXIN2|p.L499Pfs*129|1|0.24|ENSG00000168646|chr17:65537540-65537541|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	355.7119445800781	2	355.713414	709.412274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.708	1	45.607	45.107	46.107	-0.1014								0	0	0	0.8837	1	17390	17390		0.79363	0	1				11864	239	6917	6959	11444	11444					0.04594476497072719
GGKRGGKP	8	Unmodified	_GGKRGGKP_					0	0	0			REV__ENST00000512074.1_1_5:84845227-84845416:+|nuORF	REV__ENST00000512074.1_1_5:84845227-84845416:+|nuORF	MSMS	HCT116MG_D190212_S1	1	378.72723388671875	2	378.727387	755.44022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.903	1	22.903	22.403	23.403	0								0	0	0	0.8837	1	8131	8131		2.5775	1.7838	1		+		11865	11289	6918	6960	11445	11445					0.05271799477179684
GGLCDLTC	8	Unmodified	_GGLCDLTC_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MSMS	HCT116MG_D190212_S1	1	391.1639404296875	2	391.164582	780.314611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.704	1	62.704	62.204	63.204	0								0	0	0	0.8837	1	24217	24217		2.8892	0	1				11866	2594	6919	6961	11446	11446					-0.0843341648559317
GGLLLVLQSL	10	Unmodified	_GGLLLVLQSL_					0	0	0			REV__DUOX2|p.E483V|1|0.34|ENSG00000140279|chr15:45108173-45108173|T/A|missense_variant	REV__DUOX2|p.E483V|1|0.34|ENSG00000140279|chr15:45108173-45108173|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	506.8238220214844	2	506.823692	1011.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.134	1	57.134	56.634	57.634	0								0	0	0	0.80906	1	21979	21979		27.629	0.74515	1		+		11867	10420	6920	6962	11447	11447					0.1274807703384795
GGLVEKRDLL	10	Unmodified	_GGLVEKRDLL_					0	0	0			REV__ENSG00000115884|ENST00000254351|SDC1	REV__ENSG00000115884|ENST00000254351|SDC1	MULTI-MSMS	HCT116MG_D190212_S1	1	550.327392578125	2	550.327131	1098.63971	0.26642	0.00014662	0.45928	0.00025275	0.7257	0.00039937	550.3272466203088	39.033	0.20811	39.033	38.903	39.111	0					5	3	2	0	0	0	0.19283	1	14660	14660		60.074	8.4441	1	16494000	+		11868	11561	6921	6963	11448	11448					0.09433389914420331
GGLVRARN	8	Unmodified	_GGLVRARN_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MULTI-MSMS	HCT116MG_D190212_S1	1	421.7510681152344	2	421.751393	841.488233	0.066831	2.8186E-05	0.2011	8.4812E-05	0.26793	0.000113	421.75137192528496	42.026	1.7447	42.026	40.946	42.69	0					58	33	2	0	0	0	0.78216	1	15750	15750		13.508	0.97634	1	17133000	+		11869	11129	6922	6964	11449	11449					0.06114873397223164
GGLVRARN	8	Unmodified	_GGLVRARN_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	421.751393	841.488233	0.066831	2.8186E-05	0.2011	8.4812E-05	0.26793	0.000113	421.75137192528496	42.026	1.7447	42.026	40.946	42.69	0	0.084752	9.0411E-05	NaN	13.508	58	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17133000	+		11870	11129	6922	6964							0.06114873397223164
GGLVRARN	8	Unmodified	_GGLVRARN_					0	0	0			REV__nc|ENSG00000101605|P52179-2|MYOM1	REV__nc|ENSG00000101605|P52179-2|MYOM1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	421.751393	841.488233	0.10898	4.5964E-05	0.11282	4.758E-05	0.2218	9.3544E-05	421.75133873583945	42.22	1.2718	41.916	41.341	42.613	-0.30352	-0.024474	1.5948E-05	NaN	13.508	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5852300	+		11871	11129	6922	6964							0.06114873397223164
GGNGNGGN	8	Unmodified	_GGNGNGGN_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1	REV__nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	HCT116MG_D190212_S1	1	646.254150390625	1	646.253942	645.246666	0.82605	0.00053384	-0.13526	-8.7415E-05	0.69079	0.00044643	646.2537412387416	35.501	0.25811	35.501	35.371	35.63	0					7	4	2	0	0	0	0.88026	1	13222	13222		0	0	1	18868000	+		11872	13850	6923	6965	11450	11450					-0.09014782029714752
GGNGYGYC	8	Unmodified	_GGNGYGYC_					0	0	0		ENSG00000186967|ENST00000334058|KRTAP19-4	ENSG00000186967|ENST00000334058|KRTAP19-4	ENSG00000186967|ENST00000334058|KRTAP19-4	MSMS	HCT116MG_D190212_S2	2	395.64422607421875	2	395.644871	789.275189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.392	1	14.073	13.573	14.573	-0.31952								0	0	0	0.8837	1	4707	4707		0	0	1				11873	5920	6924	6966	11451	11451					-0.12787800444789355
GGPASCCHV	9	Unmodified	_GGPASCCHV_					0	0	0			REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	REV__INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	830.3298950195312	1	830.328369	829.321093	0.78261	0.00064982	0.31458	0.00026121	1.0972	0.00091103	830.3283777319074	22.259	1.2462	22.031	21.261	22.507	-0.22777					32	23	2	0	0	0	0.55919	1	7545	7545		13.508	13.508	1	4395400	+		11874	13827	6925	6967	11452	11452					-0.10039478534201862
GGPGCGPPH	9	Unmodified	_GGPGCGPPH_					0	0	0		SLC1A6|p.M377Hfs*66|1|0.13|ENSG00000105143|chr19:14956517-14956518|-/C|frameshift_variant	SLC1A6|p.M377Hfs*66|1|0.13|ENSG00000105143|chr19:14956517-14956518|-/C|frameshift_variant	SLC1A6|p.M377Hfs*66|1|0.13|ENSG00000105143|chr19:14956517-14956518|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	778.3283081054688	1	778.330084	777.322807	0.53248	0.00041445	-1.3205	-0.0010278	-0.78804	-0.00061335	778.3288006666334	16.605	0.3121	16.69	16.497	16.809	0.085424					7	5	2	0	0	0	0.77568	1	5544	5544		0	0	1	1260300			11875	18158	6926	6968	11453	11453					-0.07476101453937645
GGPGPQRQGPP	11	Unmodified	_GGPGPQRQGPP_					0	0	0			REV__ENST00000323078.7_1_7:150034543-150034807:+|nuORF	REV__ENST00000323078.7_1_7:150034543-150034807:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7710571289062	2	524.270147	1046.52574	0.3976	0.00020845	-0.74177	-0.00038889	-0.34417	-0.00018044	524.7711052717743	20.788	0.51915	20.578	20.344	20.863	-0.20959					10	9	2	0	0	0	0.67041	2	7169	7145;7169		27.629	4.8925	1	1703600	+		11876	14892	6927	6969	11454;11455	11455					0.004339198721936555
GGPHGNPP	8	Unmodified	_GGPHGNPP_					0	0	0			REV__SOX9|p.V306Gfs*272|1|0.28|ENSG00000125398|chr17:72123768-72123769|-/G|frameshift_variant	REV__SOX9|p.V306Gfs*272|1|0.28|ENSG00000125398|chr17:72123768-72123769|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	366.674560546875	2	366.67482	731.335087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.65	1	23.267	22.767	23.767	-0.38324								0	0	0	0.8837	1	8439	8439		2.5775	0	1		+		11877	17544	6928	6970	11456	11456					-0.041327417192405846
GGQGGGDGGGG	11	Unmodified	_GGQGGGDGGGG_					0	0	0			REV__ENSG00000188573|ENST00000338333|FBLL1	REV__ENSG00000188573|ENST00000338333|FBLL1	MULTI-MSMS	HCT116MG_D190212_S4	4	775.2972412109375	1	775.296535	774.289259	1.0217	0.00079209	0.24023	0.00018625	1.2619	0.00097834	775.2964975388836	56.111	0.26622	55.805	55.723	55.989	-0.30626					8	4	3	0	0	0	0.74191	1	21051	21051		0	0	1	4026800	+		11878	13959	6929	6971	11457	11457					-0.10691431692112019
GGQGGGDGGGG	11	Unmodified	_GGQGGGDGGGG_					0	0	0			REV__ENSG00000188573|ENST00000338333|FBLL1	REV__ENSG00000188573|ENST00000338333|FBLL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	775.296535	774.289259	0.7249	0.00056201	0.39186	0.00030381	1.1168	0.00086582	775.296700302448	56.146	0.26128	55.858	55.727	55.989	-0.28773	0.030847	4.1636E-05	NaN	0	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7890900	+		11879	13959	6929	6971							-0.10691431692112019
GGQGGGDGGGG	11	Unmodified	_GGQGGGDGGGG_					0	0	0			REV__ENSG00000188573|ENST00000338333|FBLL1	REV__ENSG00000188573|ENST00000338333|FBLL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	775.296535	774.289259	1.0217	0.00079209	0.24023	0.00018625	1.2619	0.00097834	775.2964975388836	56.111	0.26622	55.805	55.723	55.989	-0.30626	-0.022093	-7.5924E-05	NaN	0	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4026800	+		11880	13959	6929	6971							-0.10691431692112019
GGQGGLLL	8	Unmodified	_GGQGGLLL_					0	0	0			REV__TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant	REV__TAF1C|p.T625Qfs*16|1|0.38|ENSG00000103168|chr16:84179679-84179679|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	357.53607177734375	2	357.710871	713.407189	-0.14692	-5.2553E-05	-0.21012	-7.5161E-05	-0.35703	-0.00012771	357.7106775197023	27.816	0.61896	27.474	27.139	27.758	-0.34201					17	11	2	0	0	0	0.3238	1	9993	9993		10.183	7.2942	1	12044000	+		11881	11179	6930	6972	11458	11458					0.0390217263446857
GGQVPFGG	8	Unmodified	_GGQVPFGG_					0	0	0			REV__ENSG00000179772|ENST00000375978|FOXS1	REV__ENSG00000179772|ENST00000375978|FOXS1	MSMS	HCT116MG_D190212_S2	2	359.6795654296875	2	359.679571	717.344589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.473	1	28.143	27.643	28.643	-0.32987								0	0	0	0.8837	1	10387	10387		5.2307	2.3415	1		+		11882	13647	6931	6973	11459	11459					-0.02538973433706815
GGSEKDPVQ	9	Unmodified	_GGSEKDPVQ_					0	0	0			REV__ENST00000535682.1_17:73314626-73315194:-|nuORF	REV__ENST00000535682.1_17:73314626-73315194:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	458.72216796875	2	458.722164	915.429775	0.37187	0.00017058	0.077934	3.575E-05	0.4498	0.00020633	458.72214230964033	23.566	0.52118	23.526	23.291	23.812	-0.03968					15	9	2	0	0	0	0.29516	1	8356	8356		31.268	0.6318	1	2208400	+		11883	16339	6932	6974	11460	11460					-0.03132272758568888
GGSPSFAGPR	10	Unmodified	_GGSPSFAGPR_					0	0	0			REV__ENST00000381418.8_2_8:21988119-21988491:-|nuORF	REV__ENST00000381418.8_2_8:21988119-21988491:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	932.4593505859375	1	932.458456	931.451179	0.684	0.0006378	-0.54064	-0.00050413	0.14336	0.00013368	932.458073000854	20.922	0.46833	20.956	20.714	21.183	0.034473					11	8	2	0	0	0	0.40515	1	7308	7308		41.84	7.4379	1	3155400	+		11884	15281	6933	6975	11461	11461					-0.017288429391896898
GGSPSFAGPR	10	Unmodified	_GGSPSFAGPR_					0	0	0			REV__ENST00000381418.8_2_8:21988119-21988491:-|nuORF	REV__ENST00000381418.8_2_8:21988119-21988491:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	932.45947265625	1	932.458456	931.451179	0.72837	0.00067917	0.027065	2.5237E-05	0.75543	0.00070441	932.4584909158913	21.101	0.62293	20.892	20.5	21.123	-0.20959					17	11	2	0	0	0	0.30623	1	7251	7251		49.933	7.8384	1	1931100	+		11885	15281	6933	6975	11462	11462					-0.017288429391896898
GGSPSFAGPR	10	Unmodified	_GGSPSFAGPR_					0	0	0			REV__ENST00000381418.8_2_8:21988119-21988491:-|nuORF	REV__ENST00000381418.8_2_8:21988119-21988491:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	932.458456	931.451179	0.72837	0.00067917	0.027065	2.5237E-05	0.75543	0.00070441	932.4584909158913	21.101	0.62293	20.892	20.5	21.123	-0.20959	-0.032235	0.00026906	NaN	49.933	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1931100	+		11886	15281	6933	6975							-0.017288429391896898
GGSSRHSD	8	Unmodified	_GGSSRHSD_					0	0	0			REV__ENST00000355897.9_1_3:169755804-169797620:+|nuORF	REV__ENST00000355897.9_1_3:169755804-169797620:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	802.3447265625	1	802.34382	801.336543	0.82117	0.00065886	0.57606	0.0004622	1.3972	0.0011211	802.343930270655	55.035	0.26163	54.743	54.613	54.874	-0.2918					7	4	2	0	0	0	0.82475	1	20877	20877		8.5933	3.3626	1	6413400	+		11887	15045	6934	6976	11463	11463					-0.07207152421131013
GGSSRHSD	8	Unmodified	_GGSSRHSD_					0	0	0			REV__ENST00000355897.9_1_3:169755804-169797620:+|nuORF	REV__ENST00000355897.9_1_3:169755804-169797620:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	802.34382	801.336543	0.82117	0.00065886	0.57606	0.0004622	1.3972	0.0011211	802.343930270655	55.035	0.26163	54.743	54.613	54.874	-0.2918	0.0020222	0.00023395	NaN	8.5933	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6413400	+		11888	15045	6934	6976							-0.07207152421131013
GGSVELVRAA	10	Unmodified	_GGSVELVRAA_					0	0	0			REV__ENST00000424989.1_1_1:37921191-37921512:-|nuORF	REV__ENST00000424989.1_1_1:37921191-37921512:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	479.76953125	2	479.769448	957.524344	0.48477	0.00023258	-1.4122	-0.00067753	-0.92743	-0.00044495	479.76935967321765	29.667	0.20654	29.366	29.237	29.444	-0.30095					6	3	2	0	0	0	0.31047	1	10904	10904		49.554	9.6046	1	23018000	+		11889	15542	6935	6977	11464	11464					0.04388285783431911
GGSYAAIF	8	Unmodified	_GGSYAAIF_					0	0	0		ENST00000269122.7_2_17:57724996-57725644:+|nuORF	ENST00000269122.7_2_17:57724996-57725644:+|nuORF	ENST00000269122.7_2_17:57724996-57725644:+|nuORF	MSMS	HCT116MG_D190212_S4	4	393.1958312988281	2	393.195054	784.375555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.62	1	54.297	53.797	54.797	-0.32349								0	0	0	0.8837	1	20428	20428		5.7604	2.8712	1				11890	6915	6936	6978	11465	11465					-0.02525820119490163
GGTFGDGP	8	Unmodified	_GGTFGDGP_					0	0	0			REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	707.300048828125	1	707.299495	706.292219	1.1062	0.0007824	-0.40474	-0.00028627	0.70145	0.00049613	707.2991499452379	24.335	0.31232	23.955	23.77	24.082	-0.38003					10	5	3	0	0	0	0.6854	1	8723	8723		24.674	1.5255	1	23328000	+		11891	17214	6937	6979	11466	11466					-0.07267556567330757
GGTRERASLLY	11	Unmodified	_GGTRERASLLY_					0	0	0			REV__ENSG00000128268|ENST00000341184|MGAT3	REV__ENSG00000128268|ENST00000341184|MGAT3	MSMS	HCT116MG_D190212_S1	1	408.2226257324219	3	408.222805	1221.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.826	1	56.826	56.326	57.326	0								0	0	0	0.95636	1	21854	21854		1.2148	0.10508	1		+		11892	11871	6938	6980	11467	11467					0.04462702795012774
GGTVIVSG	8	Unmodified	_GGTVIVSG_					0	0	0			REV__ENSG00000077080|ENST00000160382|ACTL6B	REV__ENSG00000077080|ENST00000160382|ACTL6B	MULTI-MSMS	HCT116MG_D190212_S2	2	689.3832397460938	1	689.382831	688.375555	0.27597	0.00019025	0.49317	0.00033999	0.76914	0.00053023	689.383019225752	18.293	0.26144	17.93	17.799	18.061	-0.36325					6	4	2	0	0	0	0.74206	1	6304	6304		18.135	0	1	10482000	+		11893	10825	6939	6981	11468	11468					0.01890179880535925
GGVVNAAK	8	Unmodified	_GGVVNAAK_					0	0	0		U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant;U2SURP|p.S934Afs*11|1|0.34|ENSG00000163714|chr3:143054963-143054963|C/-|frameshift_variant;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;ENST00000491827.1_1_3:142733158-142735829:+|nuORF	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	357.8729248046875	2	358.208495	714.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.636	1	17.465	16.965	17.965	-0.17113								0	0	0	0.8837	1	5864	5864		5.7604	0	1				11894	4624	6940	6982	11469	11469					0.03381288491709711
GGWANDMG	8	Unmodified	_GGWANDMG_					0	0	0			REV__ENST00000328257.12_1_11:73964935-73965235:+|nuORF	REV__ENST00000328257.12_1_11:73964935-73965235:+|nuORF	MSMS	HCT116MG_D190212_S1	1	404.158935546875	2	404.158145	806.301738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4709	1	6.4709	5.9709	6.9709	0								0	0	0	0.8837	1	1950	1950		0.79363	0	1		+		11895	14912	6941	6983	11470	11470					-0.10916111553456176
GHDSAVVTLV	10	Unmodified	_GHDSAVVTLV_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	HCT116MG_D190212_S1	1	499.2158203125	2	499.269281	996.52401	0.52446	0.00026185	-0.19116	-9.544E-05	0.3333	0.00016641	499.2694398193121	28.139	0.312	28.139	27.956	28.268	0					7	5	2	0	0	0	0.76634	1	10181	10181		14.838	2.3067	1	5775800	+		11896	10335	6942	6984	11471	11471					0.025608660635839442
GHDSAVVTLV	10	Unmodified	_GHDSAVVTLV_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	HCT116MG_D190212_S1	1	499.2158203125	2	499.269281	996.52401	0.52446	0.00026185	-0.19116	-9.544E-05	0.3333	0.00016641	499.2694398193121	28.139	0.312	28.139	27.956	28.268	0					7	5	2	0	0	0	0.29442	1	10181	10181		14.838	3.7238	1	5775800	+		11897	10335	6942	6984	11472	11472					0.025608660635839442
GHDSCGCP	8	Unmodified	_GHDSCGCP_					0	0	0			REV__STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant	REV__STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	388.1278991699219	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4149	1	8.1835	7.6835	8.6835	-0.23148								0	0	0	0.8837	1	2573	2573		0.69038	0.69038	1		+		11898	12115	6943	6985	11473	11473					-0.15364330839281592
GHFLEEVF	8	Unmodified	_GHFLEEVF_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MULTI-MSMS	HCT116MG_D190212_S3	3	489.2402648925781	2	489.239993	976.465432	0.078263	3.8289E-05	0.28696	0.00014039	0.36522	0.00017868	489.2399972653899	50.855	0.36488	50.541	50.333	50.698	-0.31381					11	6	3	0	0	0	0.5791	1	19188	19188		34.187	2.0704	1	4667400	+		11899	13074	6944	6986	11474	11474					-0.023741905108977335
GHGVFSGL	8	Unmodified	_GHGVFSGL_					0	0	0		nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2;AOC2|p.N533Tfs*4|1|0.08|ENSG00000131480|chr17:42849091-42849091|A/-|frameshift_variant	nc|ENSG00000131480|O75106-2|AOC2	nc|ENSG00000131480|O75106-2|AOC2	MSMS	HCT116MG_D190212_S3	3	387.20135498046875	2	387.20067	772.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.222	1	52.919	52.419	53.419	-0.30305								0	0	0	0.8837	1	20138	20138		2.5775	1.7838	1				11900	3146	6945	6987	11475	11475					-0.008509980253393223
GHIKYKKKKK	10	Unmodified	_GHIKYKKKKK_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MSMS	HCT116MG_D190212_S1	1	419.9438781738281	3	419.943313	1256.80811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.792	1	10.792	10.292	11.292	0								0	0	0	0.97045	1	3339	3339		0.15932	0.064481	1		+		11901	11495	6946	6988	11476	11476					0.1899791661871859
GHRLLLKVI	9	Unmodified	_GHRLLLKVI_					0	0	0			REV__ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant;REV__ENST00000540578.6_1_18:9182415-9235682:+|nuORF	REV__ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	350.3277893066406	3	350.237838	1047.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.965	1	28.965	28.465	29.465	0								0	0	0	0.76995	1	10569	10569		1.0715	0.61312	1		+		11902	9939;16361	6947	6989	11477	11477					0.16974598118849826
GHTRTHARAG	10	Unmodified	_GHTRTHARAG_					0	0	0			REV__ENST00000155926.8_1_2:12857046-12857151:+|nuORF	REV__ENST00000155926.8_1_2:12857046-12857151:+|nuORF	MSMS	HCT116MG_D190212_S3	3	355.1875915527344	3	355.188317	1062.54312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.178	1	40.876	40.376	41.376	-0.30185								0	0	0	0.96377	1	15310	15310		0.69767	0	1		+		11903	14491	6948	6990	11478	11478					0.014352601978544044
GHWGGGAL	8	Unmodified	_GHWGGGAL_					0	0	0		ENST00000524249.5_1_2:46768823-46769105:-|nuORF	ENST00000524249.5_1_2:46768823-46769105:-|nuORF	ENST00000524249.5_1_2:46768823-46769105:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	754.3628540039062	1	754.363099	753.355822	0.74566	0.0005625	-1.5769	-0.0011896	-0.83127	-0.00062708	754.3615996802159	47.569	0.30156	47.569	47.395	47.696	0					9	5	3	0	0	0	0.86388	1	18064	18064		2.8892	2.8892	1	34448000			11904	8576	6949	6991	11479	11479					-0.03072151339586071
GHWGGGAL	8	Unmodified	_GHWGGGAL_					0	0	0		ENST00000524249.5_1_2:46768823-46769105:-|nuORF	ENST00000524249.5_1_2:46768823-46769105:-|nuORF	ENST00000524249.5_1_2:46768823-46769105:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	754.363099	753.355822	1.2855	0.00096973	-2.1295	-0.0016064	-0.84397	-0.00063666	754.3613595013369	47.639	0.36208	47.506	47.325	47.687	-0.13281	-0.031553	-4.6957E-05	NaN	2.8892	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54059000			11905	8576	6949	6991							-0.03072151339586071
GHYPYWFQQK	10	Unmodified	_GHYPYWFQQK_					0	0	0		nc|ENSG00000211649|A0A075B6I9|IGLV7-46	nc|ENSG00000211649|A0A075B6I9|IGLV7-46	nc|ENSG00000211649|A0A075B6I9|IGLV7-46	MSMS	HCT116MG_D190212_S3	3	451.8839111328125	3	451.884012	1352.63021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.29852	1	0.35942	-0.14058	0.85942	0.060905								0	0	0	0.97054	1	106	106		0.13989	0	1				11906	9617	6950	6992	11480	11480					-0.032003783711161304
GIACAHFI	8	Unmodified	_GIACAHFI_					0	0	0		ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	416.21282958984375	2	416.212724	830.410894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.305	1	28.305	27.805	28.805	0								0	0	0	0.8837	1	10306	10306		11.114	0.93107	1				11907	18119	6951	6993	11481	11481					-0.01109480863317458
GIACAHFI	8	Unmodified	_GIACAHFI_					0	0	0		ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	416.21270751953125	2	416.212724	830.410894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.568	1	25.452	24.952	25.952	-0.11623								0	0	0	0.86899	1	9134	9134		17.087	5.4463	1				11908	18119	6951	6993	11482	11482					-0.01109480863317458
GIACAHFI	8	Unmodified	_GIACAHFI_					0	0	0		ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	416.212158203125	2	416.212724	830.410894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.125	1	24.846	24.346	25.346	-0.27958								0	0	0	0.8837	1	8888	8888		6.3541	1.1234	1				11909	18119	6951	6993	11483	11483					-0.01109480863317458
GIACAHFI	8	Unmodified	_GIACAHFI_					0	0	0		ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	ROR2|p.R184H|1|0.14|ENSG00000169071|chr9:91737462-91737462|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	416.21270751953125	2	416.212724	830.410894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.548	1	25.269	24.769	25.769	-0.27958								0	0	0	0.8837	1	9059	9059		6.3541	1.1234	1				11910	18119	6951	6993	11484	11484					-0.01109480863317458
GIAQSAKV	8	Unmodified	_GIAQSAKV_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	HCT116MG_D190212_S2	2	387.2295227050781	2	387.229428	772.444303	-0.056135	-2.1737E-05	0.32104	0.00012432	0.2649	0.00010258	387.2295594858667	20.323	0.20985	19.943	19.813	20.023	-0.37949					5	3	2	0	0	0	0.62424	1	7126	7126		30.225	1.738	1	5898500			11911	4643	6952	6994	11485	11485					0.04897844180231914
GIASGELPRRR	11	Unmodified	_GIASGELPRRR_					0	0	0			REV__ENST00000418304.1_3_1:235490262-235491379:-|nuORF	REV__ENST00000418304.1_3_1:235490262-235491379:-|nuORF	MSMS	HCT116MG_D190212_S1	1	606.3504638671875	2	606.352003	1210.68945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.639	1	21.639	21.139	22.139	0								0	0	0	0.95196	1	7622	7622		5.2969	0.39987	1		+		11912	15496	6953	6995	11486	11486					0.09253517643082887
GIDDEDDS	8	Unmodified	_GIDDEDDS_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MSMS	HCT116MG_D190212_S3	3	433.156494140625	2	433.156519	864.298486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.775	1	11.83	11.33	12.33	0.055045								0	0	0	0.8837	1	3629	3629		0.79363	0	1				11913	2589	6954	6996	11487	11487					-0.13909127917122532
GIDDEDDS	8	Unmodified	_GIDDEDDS_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MSMS	HCT116MG_D190212_S4	4	433.15679931640625	2	433.156519	864.298486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.28	1	12.111	11.611	12.611	-0.16903								0	0	0	0.8837	1	3804	3804		0.79363	0	1				11914	2589	6954	6996	11488	11488					-0.13909127917122532
GIDEEDIRF	9	Unmodified	_GIDEEDIRF_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	HCT116MG_D190212_S3	3	547.2610473632812	2	547.261653	1092.50875	0.37126	0.00020317	-0.088359	-4.8355E-05	0.2829	0.00015482	547.2613242498486	31.38	1.1859	31.109	30.348	31.534	-0.27028					29	22	2	0	0	0	0.51829	1	11427	11427		15.847	15.847	1	4323700			11915	3642	6955	6997	11489	11489					-0.03380045524272646
GIDEEDIRF	9	Unmodified	_GIDEEDIRF_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	HCT116MG_D190212_S4	4	547.260986328125	2	547.261653	1092.50875	0.58459	0.00031992	-0.17221	-9.4244E-05	0.41238	0.00022568	547.2615826905358	27	0.51947	26.688	26.587	27.106	-0.3114					12	9	2	0	0	0	0.2853	1	9665	9665		32.305	8.2849	1	1918700			11916	3642	6955	6997	11490	11490					-0.03380045524272646
GIDETLEVF	9	Unmodified	_GIDETLEVF_					0	0	0			REV__ENSG00000132911|ENST00000255262|NMUR2	REV__ENSG00000132911|ENST00000255262|NMUR2	MULTI-MSMS	HCT116MG_D190212_S3	3	1022.50537109375	1	1022.50407	1021.49679	0.69988	0.00071563	-3.6479	-0.00373	-2.948	-0.0030143	1023.5009206125283	55.925	0.26131	55.638	55.518	55.779	-0.28773					9	4	3	0	0	0	0.14972	1	21275	21275		48.346	0	1	4587100	+		11917	12010	6956	6998	11491	11491					-0.013096622674765968
GIDETLEVF	9	Unmodified	_GIDETLEVF_					0	0	0			REV__ENSG00000132911|ENST00000255262|NMUR2	REV__ENSG00000132911|ENST00000255262|NMUR2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1022.50407	1021.49679	0.90863	0.00092908	-0.78919	-0.00080695	0.11944	0.00012213	1022.5039303501595	55.684	0.20592	55.684	55.554	55.76	0	0.02299	0.00037268	NaN	48.346	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20247000	+		11918	12010	6956	6998							-0.013096622674765968
GIDETLEVF	9	Unmodified	_GIDETLEVF_					0	0	0			REV__ENSG00000132911|ENST00000255262|NMUR2	REV__ENSG00000132911|ENST00000255262|NMUR2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1022.50407	1021.49679	0.69988	0.00071563	-3.6479	-0.00373	-2.948	-0.0030143	1023.5009206125283	55.925	0.26131	55.638	55.518	55.779	-0.28773	-0.02299	-0.0025503	NaN	48.346	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4587100	+		11919	12010	6956	6998							-0.013096622674765968
GIDMGFWPFPP	11	Unmodified	_GIDMGFWPFPP_					0	0	0			REV__PANK1|p.K400Sfs*23|1|0.36|ENSG00000152782|chr10:89599363-89599363|T/-|frameshift_variant	REV__PANK1|p.K400Sfs*23|1|0.36|ENSG00000152782|chr10:89599363-89599363|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	421.86895751953125	3	421.867082	1262.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.32	1	14.159	13.659	14.659	-0.16089								0	0	0	0.95925	1	4526	4526		0.50596	0	1		+		11920	17382	6957	6999	11492	11492					-0.04137043740320223
GIDPIWNLASN	11	Unmodified	_GIDPIWNLASN_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MSMS	HCT116MG_D190212_S3	3	600.3052978515625	2	600.306395	1198.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.043	1	54.751	54.251	55.251	-0.2918								0	0	0	0.9465	1	20870	20870		8.1555	0.24537	1				11921	2046	6958	7000	11493	11493					0.006882091551005942
GIDSMPDLRR	10	Unmodified	_GIDSMPDLRR_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant;UNC13C|p.P2056Qfs*10|1|0.33|ENSG00000137766|chr15:54622384-54622384|C/-|frameshift_variant;ENSG00000137766|ENST00000260323|UNC13C;UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant;UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant	ENSG00000198722|ENST00000635942|UNC13B;UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	ENSG00000198722|ENST00000635942|UNC13B	MSMS	HCT116MG_D190212_S3	3	580.5848999023438	2	580.298047	1158.58154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.22	1	14.3	13.8	14.8	0.079683								0	0	0	0.96769	1	4563	4563		0.45834	0	1				11922	6258;3497	6959	7001	11494	11494					0.008593849974886325
GIDSSSPEV	9	Unmodified	_GIDSSSPEV_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	890.4100341796875	1	890.410168	889.402892	0.60301	0.00053692	0.12607	0.00011226	0.72908	0.00064918	890.410184361475	29.919	0.40926	29.919	29.737	30.146	0					17	7	4	0	0	0	0.013464	1	10938	10938		104.8	52.531	1	115460000			11923	5080	6960	7002	11495	11495					-0.04623381369754043
GIDSSSPEV	9	Unmodified	_GIDSSSPEV_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	890.4114379882812	1	890.410168	889.402892	0.58862	0.00052411	-0.496	-0.00044164	0.09262	8.2469E-05	890.4095713425427	30.235	0.46322	29.951	29.77	30.233	-0.28453					18	8	3	0	0	0	0.013464	1	11087	11087		104.8	52.531	1	281910000			11924	5080	6960	7002	11496	11496					-0.04623381369754043
GIDSSSPEV	9	Unmodified	_GIDSSSPEV_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	890.4108276367188	1	890.410168	889.402892	0.86953	0.00077424	0.6748	0.00060085	1.5443	0.0013751	890.4106080267314	30.345	0.22044	30.095	29.913	30.134	-0.24946					6	4	2	0	0	0	0.031005	1	11062	11062		85.357	34.502	1	7645400			11925	5080	6960	7002	11497	11497					-0.04623381369754043
GIDYDEVEYQR	11	Unmodified	_GIDYDEVEYQR_					0	0	0		tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	693.8099975585938	2	693.812239	1385.60992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.064	1	24.958	24.458	25.458	-0.10618								0	0	0	0.94755	1	8931	8931		7.609	1.8771	1				11926	18493	6961	7003	11498	11498					-0.06745638612233051
GIETFSSVSS	10	Unmodified	_GIETFSSVSS_					0	0	0			REV__ENST00000398632.3_1_21:42775383-42780157:+|nuORF	REV__ENST00000398632.3_1_21:42775383-42780157:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	507.24285888671875	2	507.242929	1012.47131	0.3563	0.00018073	-0.22659	-0.00011494	0.12971	6.5795E-05	507.2427693227318	24.389	0.31114	24.12	23.978	24.289	-0.26881					7	5	2	0	0	0	0.64004	1	8611	8611		25.399	0	1	3514500	+		11927	13764	6962	7004	11499	11499					-0.03443136789894652
GIETIANEY	9	Unmodified	_GIETIANEY_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;HSPA4L|p.G575Efs*18|1|0.36|ENSG00000164070|chr4:127820470-127820470|A/-|frameshift_variant;nc|ENSG00000170606|P34932-2|HSPA4;HSPA4L|p.F148Lfs*9|1|0.25|ENSG00000164070|chr4:127801147-127801147|T/-|frameshift_variant;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1009.4839477539062	1	1009.48367	1008.47639	0.6721	0.00067848	-0.049805	-5.0278E-05	0.6223	0.0006282	1009.4835514204264	42.526	0.67708	42.222	41.728	42.405	-0.30352					20	12	3	0	0	0	0.16144	1	15726	15726		46.021	9.9768	1	32101000			11928	5144;4663	6963	7005	11500	11500					-0.02750832927290503
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	532.7908935546875	2	532.790381	1063.56621	0.38881	0.00020715	-0.049472	-2.6358E-05	0.33934	0.0001808	532.7902183892066	34.415	0.46888	34.415	34.128	34.597	0					10	8	2	0	0	0	0.05892	1	12770	12770		88.904	19.799	1	43469000	+		11929	16296	6964	7006	11501	11501					0.036968414719467546
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MSMS	HCT116MG_D190212_S1	1	355.52880859375	3	355.529346	1063.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.43	1	34.43	33.93	34.93	0								0	0	0	0.60272	1	12774	12774		23.79	5.4167	1		+		11930	16296	6964	7006	11502	11502					0.036968414719467546
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	532.79150390625	2	532.790381	1063.56621	0.7127	0.00037972	0.41015	0.00021852	1.1228	0.00059824	532.7905523060676	34.577	0.25758	34.417	34.242	34.5	-0.16011					14	4	4	0	0	0	0.082877	1	12860	12860		78.149	24.317	1	107240000	+		11931	16296	6964	7006	11503	11503					0.036968414719467546
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	355.52947998046875	3	355.529346	1063.56621	0.11561	4.1102E-05	0.21787	7.7458E-05	0.33347	0.00011856	355.52935437429977	34.532	0.25758	34.356	34.227	34.485	-0.17512					7	4	2	0	0	0	0.37942	1	12877	12877		23.79	4.1638	1	29882000	+		11932	16296	6964	7006	11504	11504					0.036968414719467546
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	532.790381	1063.56621	0.38881	0.00020715	-0.049472	-2.6358E-05	0.33934	0.0001808	532.7902183892066	34.415	0.46888	34.415	34.128	34.597	0	-0.00094662	-0.0003468	NaN	88.904	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43469000	+		11933	16296	6964	7006							0.036968414719467546
GIFERTQTI	9	Unmodified	_GIFERTQTI_					0	0	0			REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	REV__ENST00000528435.5_1_11:118175667-118182938:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	532.790381	1063.56621	0.7127	0.00037972	0.41015	0.00021852	1.1228	0.00059824	532.7905523060676	34.577	0.25758	34.417	34.242	34.5	-0.16011	0.00094662	0.00014296	NaN	88.904	14	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107240000	+		11934	16296	6964	7006							0.036968414719467546
GIFGGHIRSV	10	Unmodified	_GIFGGHIRSV_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	HCT116MG_D190212_S1	1	521.7933959960938	2	521.793258	1041.57196	0.53987	0.0002817	-0.17311	-9.0326E-05	0.36676	0.00019137	521.7931644111939	37.681	0.20886	37.681	37.55	37.759	0					6	3	2	0	0	0	0.45124	1	14109	14109		38.615	5.8291	1	17238000			11935	1879	6965	7007	11505	11505					0.05283984774268902
GIGDPITE	8	Unmodified	_GIGDPITE_					0	0	0			REV__ENST00000487251.5_1_6:53762124-53769284:+|nuORF	REV__ENST00000487251.5_1_6:53762124-53769284:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	801.3992919921875	1	801.398875	800.391599	0.97823	0.00078395	0.29231	0.00023426	1.2705	0.0010182	801.3988681914844	41.439	0.30676	41.371	41.242	41.549	-0.068199					7	5	2	0	0	0	0.2477	1	15708	15708		64.236	18.215	1	16330000	+		11936	12169	6966	7008	11506	11506					-0.016581586732399956
GIGLKNYAEYQ	11	Unmodified	_GIGLKNYAEYQ_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	HCT116MG_D190212_S2	2	628.3506469726562	2	628.319502	1254.62445	0.5355	0.00033647	-1.4254	-0.00089561	-0.8899	-0.00055914	628.318778141982	40.201	0.20797	40.128	39.998	40.206	-0.072838					5	3	2	0	0	0	0.73177	1	15107	15107		10.074	3.3508	1	9570900			11937	2160	6967	7009	11507	11507					0.0073247832656306855
GIGSDLRARR	10	Unmodified	_GIGSDLRARR_					0	0	0		ENST00000323848.13_1_1:24969774-24972497:+|nuORF	ENST00000323848.13_1_1:24969774-24972497:+|nuORF	ENST00000323848.13_1_1:24969774-24972497:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	550.8185424804688	2	550.817796	1099.62104	0.30785	0.00016957	1.0255	0.00056486	1.3334	0.00073444	550.8185547987351	41.234	0.25587	41.165	41.089	41.345	-0.068199					6	4	2	0	0	0	0.58749	1	15608	15608		29.082	0.59474	1	19470000			11938	7120	6968	7010	11508	11508					0.07521273063230183
GIIVEEEFRPE	11	Unmodified	_GIIVEEEFRPE_					0	0	0			REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	659.3397216796875	2	659.337892	1316.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.339	1	39.037	38.537	39.537	-0.30137								0	0	0	0.93717	1	14600	14600		13.042	2.9685	1		+		11939	12780	6969	7011	11509	11509					0.015567301524924915
GIIVEEEFRPE	11	Unmodified	_GIIVEEEFRPE_					0	0	0			REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	659.3401489257812	2	659.337892	1316.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.864	1	39.563	39.063	40.063	-0.30137								0	0	0	0.93717	1	14785	14785		13.042	4.2971	1		+		11940	12780	6969	7011	11510	11510					0.015567301524924915
GIIVEEEFRPE	11	Unmodified	_GIIVEEEFRPE_					0	0	0			REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	659.3399658203125	2	659.337892	1316.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.384	1	39.003	38.503	39.503	-0.38055								0	0	0	0.93717	1	14468	14468		13.042	1.5478	1		+		11941	12780	6969	7011	11511	11511					0.015567301524924915
GIIVEEEFRPE	11	Unmodified	_GIIVEEEFRPE_					0	0	0			REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	659.3413696289062	2	659.337892	1316.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.894	1	39.515	39.015	40.015	-0.37936								0	0	0	0.93717	1	14624	14624		13.042	0.80181	1		+		11942	12780	6969	7011	11512	11512					0.015567301524924915
GIIVEEEFRPE	11	Unmodified	_GIIVEEEFRPE_					0	0	0			REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	REV__GPRASP2|p.E396Rfs*68|1|0.14|ENSG00000158301|chrX:102716050-102716050|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	659.3402099609375	2	659.337892	1316.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.203	1	41.827	41.327	42.327	-0.37565								0	0	0	0.94416	1	15502	15502		9.3831	2.0939	1		+		11943	12780	6969	7011	11513	11513					0.015567301524924915
GIKETLKV	8	Unmodified	_GIKETLKV_					0	0	0		ENST00000395881.7_1_20:55052062-55052167:+|nuORF	ENST00000395881.7_1_20:55052062-55052167:+|nuORF	ENST00000395881.7_1_20:55052062-55052167:+|nuORF	MSMS	HCT116MG_D190212_S2	2	444.2803649902344	2	444.28166	886.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.909	1	36.794	36.294	37.294	-0.11478								0	0	0	0.8837	1	13817	13817		9.3474	0	1				11944	7649	6970	7012	11514	11514					0.10095545936962935
GIKETRKYKKV	11	Unmodified	_GIKETRKYKKV_					0	0	0		ENST00000478899.1_1_1:156707192-156707995:-|nuORF;ENSG00000143314|ENST00000361531|MRPL24	ENST00000478899.1_1_1:156707192-156707995:-|nuORF	ENST00000478899.1_1_1:156707192-156707995:-|nuORF	MSMS	HCT116MG_D190212_S1	1	675.4144897460938	2	675.416811	1348.81907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.4	1	40.4	39.9	40.9	0								0	0	0	0.95273	1	15184	15184		4.897	0.70751	1				11945	3795	6971	7013	11515	11515					0.15861274202347886
GIKEVKDKPEG	11	Unmodified	_GIKEVKDKPEG_					0	0	0			REV__ENST00000504430.5_1_5:36961623-36995905:+|nuORF	REV__ENST00000504430.5_1_5:36961623-36995905:+|nuORF	MSMS	HCT116MG_D190212_S4	4	600.3224487304688	2	600.335153	1198.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.207	1	36.823	36.323	37.323	-0.3839								0	0	0	0.94416	1	13645	13645		9.3831	0	1		+		11946	12990	6972	7014	11516	11516					0.0643705136067183
GIKIKKKKKVL	11	Unmodified	_GIKIKKKKKVL_					0	0	0		PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant;ENSG00000204569|ENST00000376511|PPP1R10	PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant;ENSG00000204569|ENST00000376511|PPP1R10	PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	642.2327270507812	2	641.968483	1281.92241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.479	1	36.351	35.851	36.851	-0.12799								0	0	0	0.96141	1	13643	13643		0.35063	0.043601	1				11947	9769;6341	6973	7015	11517	11517					0.2927280638082266
GIKKTHRLKIK	11	Unmodified	_GIKKTHRLKIK_					0	0	0		ENST00000475406.5_1_1:210405005-210405083:-|nuORF	ENST00000475406.5_1_1:210405005-210405083:-|nuORF	ENST00000475406.5_1_1:210405005-210405083:-|nuORF	MSMS	HCT116MG_D190212_S4	4	441.2972106933594	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.235	1	14.074	13.574	14.574	-0.16089								0	0	0	0.96121	1	4496	4496		0.45452	0.31463	1				11948	8200	6974	7016	11518	11518					0.22417277055819795
GIKLPFLVM	9	Unmodified	_GIKLPFLVM_					0	0	0		ENSG00000070761|ENST00000262498|CFAP20;ENST00000567092.1_1_16:58149929-58163019:-|nuORF;ENST00000562622.5_1_16:58149118-58163019:-|nuORF	ENSG00000070761|ENST00000262498|CFAP20	ENSG00000070761|ENST00000262498|CFAP20	MULTI-MSMS	HCT116MG_D190212_S3	3	509.3116455078125	2	509.311906	1016.60926	0.17336	8.8295E-05	-0.024115	-1.2282E-05	0.14925	7.6013E-05	509.31178094542855	51.411	0.94268	51.1	50.7	51.643	-0.31166					59	17	5	0	0	0	0.70732	1	19331	19331		4.756	0.42677	1	80527000			11949	1243	6975	7017	11519	11519					0.10161939995680314
GILPMVPEV	9	Unmodified	_GILPMVPEV_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	HCT116MG_D190212_S2	2	954.5330200195312	1	954.532866	953.52559	0.70411	0.0006721	0.14111	0.00013469	0.84522	0.00080679	954.5328127290545	57.722	0.20755	57.547	57.418	57.626	-0.17494					8	3	3	0	0	0	0.058138	1	22321	22321		70.716	23.795	1	12052000			11950	2836	6976	7018	11520	11520					0.04696783827978379
GILRYRVDF	9	Unmodified	_GILRYRVDF_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MSMS	HCT116MG_D190212_S3	3	380.21807861328125	3	380.217102	1137.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.096	1	34.799	34.299	35.299	-0.29707								0	0	0	0.76875	1	12942	12942		5.2969	0	1				11951	2710	6977	7019	11521	11521					0.06616826979848156
GILSVDLL	8	Unmodified	_GILSVDLL_					0	0	0		ENST00000438257.8_2_14:80669457-80677836:-|nuORF;ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2	ENST00000438257.8_2_14:80669457-80677836:-|nuORF	ENST00000438257.8_2_14:80669457-80677836:-|nuORF	MSMS	HCT116MG_D190212_S1	1	415.25384521484375	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.539	1	46.539	46.039	47.039	0								0	0	0	0.80194	1	17660	17660		22.453	5.3661	1				11952	6398	6978	7020	11522	11522					0.07456168154294573
GIMMYHRNRL	10	Unmodified	_GIMMYHRNRL_					0	0	0		ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MSMS	HCT116MG_D190212_S4	4	430.55914306640625	3	430.890115	1289.64852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.143	1	13.982	13.482	14.482	-0.16089								0	0	0	0.96769	1	4466	4466		0.77653	0.27058	1				11953	4407	6979	7021	11523	11523					0.0152771700759331
GINQQSLPPIL	11	Unmodified	_GINQQSLPPIL_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MSMS	HCT116MG_D190212_S4	4	590.30419921875	2	590.340238	1178.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.828	1	30.463	29.963	30.963	-0.36416								0	0	0	0.93456	1	11163	11163		14.405	2.9107	1		+		11954	10608	6980	7022	11524	11524					0.08373659085918916
GINRYKLEYE	10	Unmodified	_GINRYKLEYE_					0	0	0			REV__ENSG00000123496|ENST00000243213|IL13RA2	REV__ENSG00000123496|ENST00000243213|IL13RA2	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.221	1	12.283	11.783	12.783	0.06246								0	0	0	0.97045	1	3796	3796		0.15932	0	1		+		11955	11766	6981	7023	11525	11525					0.020521672179029338
GINRYKLEYE	10	Unmodified	_GINRYKLEYE_					0	0	0			REV__ENSG00000123496|ENST00000243213|IL13RA2	REV__ENSG00000123496|ENST00000243213|IL13RA2	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.278	1	13.347	12.847	13.847	0.069158								0	0	0	0.97045	1	4201	4201		0.15932	0	1		+		11956	11766	6981	7023	11526	11526					0.020521672179029338
GINRYKLEYE	10	Unmodified	_GINRYKLEYE_					0	0	0			REV__ENSG00000123496|ENST00000243213|IL13RA2	REV__ENSG00000123496|ENST00000243213|IL13RA2	MSMS	HCT116MG_D190212_S3	3	428.8912353515625	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.721	1	13.796	13.296	14.296	0.074899								0	0	0	0.97045	1	4370	4370		0.15932	0	1		+		11957	11766	6981	7023	11527	11527					0.020521672179029338
GINRYKLEYE	10	Unmodified	_GINRYKLEYE_					0	0	0			REV__ENSG00000123496|ENST00000243213|IL13RA2	REV__ENSG00000123496|ENST00000243213|IL13RA2	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.803	1	13.878	13.378	14.378	0.074899								0	0	0	0.97045	1	4401	4401		0.15932	0	1		+		11958	11766	6981	7023	11528	11528					0.020521672179029338
GINRYKLEYE	10	Unmodified	_GINRYKLEYE_					0	0	0			REV__ENSG00000123496|ENST00000243213|IL13RA2	REV__ENSG00000123496|ENST00000243213|IL13RA2	MSMS	HCT116MG_D190212_S3	3	428.55712890625	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.949	1	14.024	13.524	14.524	0.074899								0	0	0	0.97045	1	4458	4458		0.15932	0	1		+		11959	11766	6981	7023	11529	11529					0.020521672179029338
GIPMLKIVF	9	Unmodified	_GIPMLKIVF_					0	0	0		nc|ENSG00000120519|Q0GE19-3|SLC10A7;ENSG00000120519|ENST00000335472|SLC10A7;nc|ENSG00000120519|Q0GE19-1|SLC10A7	nc|ENSG00000120519|Q0GE19-3|SLC10A7	nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-MSMS	HCT116MG_D190212_S1	1	509.3118896484375	2	509.311906	1016.60926	0.19244	9.8013E-05	0.14879	7.578E-05	0.34123	0.00017379	509.31206635558806	50.394	1.4957	50.394	49.853	51.349	0					74	28	6	0	0	0	0.22969	1	19313	19313		38.151	9.6643	1	7152599999.999999			11960	2701	6982	7024	11530	11530					0.10161939995680314
GIPPAPRGV	9	Unmodified	_GIPPAPRGV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000173110|ENST00000309758|HSPA6;HSPA6|p.D632Gfs*9|1|0.12|ENSG00000173110|chr1:161526547-161526548|-/G|frameshift_variant;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000509378.1_1_4:165110937-165111516:+|nuORF;ENST00000432228.1_1_2:222827655-222828180:+|nuORF;ENST00000532091.1_1_11:122929265-122929517:-|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L;ENSG00000113013|ENST00000297185|HSPA9;ENSG00000044574|ENST00000324460|HSPA5;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant	ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000113013|ENST00000297185|HSPA9;ENSG00000044574|ENST00000324460|HSPA5	ENSG00000109971|ENST00000534624|HSPA8	MSMS	HCT116MG_D190212_S1	1	432.2584533691406	2	432.25852	862.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.056	1	30.056	29.556	30.556	0								0	0	0	0.50556	1	11009	11009		28.487	5.3384	1				11961	2228;6330;2366;1021	6983	7025	11531	11531					0.06573525825513116
GIQVMFEMWRQ	11	Unmodified	_GIQVMFEMWRQ_					0	0	0			REV__SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	REV__SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	712.8458862304688	2	712.844307	1423.67406	0.72783	0.00051883	0.45933	0.00032743	1.1872	0.00084626	712.8445210295068	34.842	0.45898	34.456	34.187	34.646	-0.38606					11	8	2	0	0	0	0.72792	1	12792	12792		11.495	4.393	1	2733400	+		11962	14116	6984	7026	11532	11532					-0.020828532606401495
GIQVMFEMWRQ	11	Unmodified	_GIQVMFEMWRQ_					0	0	0			REV__SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	REV__SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	712.844307	1423.67406	0.55053	0.00039244	-1.6382	-0.0011678	-1.0877	-0.00077534	712.8423595939992	34.919	0.2082	34.622	34.492	34.7	-0.29707	0.083345	-0.0023686	NaN	11.495	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234500	+		11963	14116	6984	7026							-0.020828532606401495
GISEPVKY	8	Unmodified	_GISEPVKY_					0	0	0			REV__nc|ENSG00000122376|Q86V20|SHLD2	REV__nc|ENSG00000122376|Q86V20|SHLD2	MULTI-MSMS	HCT116MG_D190212_S3	3	446.7427673339844	2	446.742368	891.470183	0.067723	3.0255E-05	0.16177	7.2268E-05	0.22949	0.00010252	446.7423506587756	19.04	0.36385	19.109	18.979	19.343	0.069159					8	6	2	0	0	0	0.55794	1	6520	6520		36.044	7.5574	1	6488800	+		11964	11736	6985	7027	11533	11533					0.020106936318597946
GISLKAPRQR	10	Unmodified	_GISLKAPRQR_					0	0	0			REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	563.76904296875	2	563.346189	1124.67783	0.41585	0.00023427	-0.48671	-0.00027419	-0.070858	-3.9918E-05	563.3459797634054	46.851	0.26002	46.48	46.276	46.536	-0.37134					6	4	2	0	0	0	0.87945	1	17310	17310		3.5965	3.5965	1	1337500	+		11965	9857	6986	7028	11534	11534					0.12047320619740276
GISVESLV	8	Unmodified	_GISVESLV_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	HCT116MG_D190212_S1	1	803.4508666992188	1	803.450911	802.443634	0.97293	0.0007817	-1.0984	-0.00088247	-0.12542	-0.00010077	803.4499079533243	46.363	0.25821	46.363	46.182	46.44	0					6	4	2	0	0	0	0.29313	1	17604	17604		59.795	3.2539	1	9880400	+		11966	13681	6987	7029	11535	11535					0.034510047405206024
GITALVPV	8	Unmodified	_GITALVPV_					0	0	0		ENSG00000185758|ENST00000541814|CLDN24	ENSG00000185758|ENST00000541814|CLDN24	ENSG00000185758|ENST00000541814|CLDN24	MSMS	HCT116MG_D190212_S4	4	385.2444763183594	2	385.244547	768.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.484	1	28.152	27.652	28.652	-0.33138								0	0	0	0.8837	1	10244	10244		15.768	0	1				11967	5844	6988	7030	11536	11536					0.0810420284542488
GIVGEIYMKY	10	Unmodified	_GIVGEIYMKY_					0	0	0		tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1	tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1	tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	586.8028564453125	2	586.804642	1171.59473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.033	1	44.66	44.16	45.16	-0.37326								0	0	0	0.91906	1	16598	16598		11.64	2.8949	1				11968	18319	6989	7031	11537	11537					0.015798230568861982
GIVGGLSTV	9	Unmodified	_GIVGGLSTV_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	HCT116MG_D190212_S2	2	802.4674682617188	1	802.466895	801.459619	0.82865	0.00066496	0.11371	9.1249E-05	0.94236	0.00075621	802.4669670739186	45.529	0.20613	45.436	45.307	45.514	-0.092472					5	3	2	0	0	0	0.014796	1	17347	17347		101.72	23.738	1	14253000			11969	4789	6990	7032	11538	11538					0.05094710977414252
GIVGGLSTV	9	Unmodified	_GIVGGLSTV_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MATCH	HCT116MG_D190212_S1	1		1	802.466895	801.459619	0.89556	0.00071865	-0.10501	-8.4269E-05	0.79054	0.00063439	802.4664154354361	45.477	0.2084	45.477	45.347	45.555	0	0.020476	-0.00014767	NaN	101.72	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5846300			11970	4789	6990	7032							0.05094710977414252
GIVKKHKPE	9	Unmodified	_GIVKKHKPE_					0	0	0		nc|ENSG00000159110|P48551-3|IFNAR2;nc|ENSG00000159110|P48551-2|IFNAR2;ENSG00000159110|ENST00000342136|IFNAR2	nc|ENSG00000159110|P48551-3|IFNAR2	nc|ENSG00000159110|P48551-3|IFNAR2	MSMS	HCT116MG_D190212_S2	2	518.31689453125	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.443	1	45.35	44.85	45.85	-0.092472								0	0	0	0.76669	1	17281	17281		12.532	3.1841	1				11971	4396	6991	7033	11539	11539					0.10773728468188892
GIWYLFHREP	10	Unmodified	_GIWYLFHREP_					0	0	0		TMEM2|p.K693R|1|0.14|ENSG00000135048|chr9:71725681-71725681|T/C|missense_variant	TMEM2|p.K693R|1|0.14|ENSG00000135048|chr9:71725681-71725681|T/C|missense_variant	TMEM2|p.K693R|1|0.14|ENSG00000135048|chr9:71725681-71725681|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	659.3404541015625	2	659.340572	1316.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.19	1	41.886	41.386	42.386	-0.30352								0	0	0	0.93854	1	15709	15709		7.2892	0.56607	1				11972	18273	6992	7034	11540	11540					0.02092498525598785
GIYTGKISID	10	Unmodified	_GIYTGKISID_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	HCT116MG_D190212_S2	2	1066.582275390625	1	1066.5779	1065.57063	0.59514	0.00063476	3.6364	0.0038785	4.2315	0.0045132	1066.5814920013208	58.036	0.20835	57.866	57.735	57.943	-0.1703					5	3	2	0	0	0	0.29734	1	22442	22442		9.3831	0	1	113030000			11973	1391	6993	7035	11541	11541					0.04046305894848956
GIYVFCYAGCS	11	Unmodified	_GIYVFCYAGCS_					0	0	0		nc|ENSG00000168813|Q8TCN5-2|ZNF507	nc|ENSG00000168813|Q8TCN5-2|ZNF507	nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	HCT116MG_D190212_S1	1	591.7500610351562	2	591.751553	1181.48855	0.6445	0.00038139	-1.932	-0.0011433	-1.2875	-0.00076189	591.7495335675538	26.631	0.2602	26.631	26.501	26.761	0					10	4	3	0	0	0	0.64329	1	9635	9635		30.637	3.0077	1	11967000			11974	9540	6994	7036	11542	11542					-0.09493255780103027
GIYVFCYAGCS	11	Unmodified	_GIYVFCYAGCS_					0	0	0		nc|ENSG00000168813|Q8TCN5-2|ZNF507	nc|ENSG00000168813|Q8TCN5-2|ZNF507	nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	591.751553	1181.48855	0.64397	0.00038107	-3.4483	-0.0020406	-2.8044	-0.0016595	591.7496658599492	26.819	0.20824	26.67	26.567	26.775	-0.14924	0.019669	-0.00024274	NaN	30.637	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2482300			11975	9540	6994	7036							-0.09493255780103027
GKAAKEYPFIL	11	Unmodified	_GKAAKEYPFIL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MSMS	HCT116MG_D190212_S1	1	618.8541259765625	2	618.852981	1235.69141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.043	1	41.043	40.543	41.543	0								0	0	0	0.94942	1	15444	15444		6.6304	0.42459	1				11976	997	6995	7037	11543	11543					0.08299133608329612
GKACGVSV	8	Unmodified	_GKACGVSV_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-MSMS	HCT116MG_D190212_S2	2	360.6890563964844	2	360.689081	719.36361	-0.078079	-2.8162E-05	0.10025	3.6158E-05	0.022167	7.9955E-06	360.6890748007847	25.217	0.20809	24.842	24.712	24.92	-0.37521					5	3	2	0	0	0	0.85571	1	9090	9090		4.3292	0.38484	1	16338000			11977	1010	6996	7038	11544	11544					-0.007297601343111637
GKDEKGRKI	9	Unmodified	_GKDEKGRKI_					0	0	0		ENST00000478462.5_1_X:11777869-11779061:+|nuORF;nc|ENSG00000005302|Q8N5Y2-5|MSL3;MSL3|p.P440Qfs*22|1|0.32|ENSG00000005302|chrX:11772188-11772188|C/-|frameshift_variant;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	ENST00000478462.5_1_X:11777869-11779061:+|nuORF	ENST00000478462.5_1_X:11777869-11779061:+|nuORF	MSMS	HCT116MG_D190212_S2	2	516.018310546875	2	515.803823	1029.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.36	1	50.188	49.688	50.688	-0.1719								0	0	0	0.41664	1	19299	19299		32.786	5.1569	1				11978	813	6997	7039	11545	11545					0.07947950083143951
GKDKITSEVEK	11	Unmodified	_GKDKITSEVEK_					0	0	0		tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	617.3401489257812	2	617.337892	1232.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.487	1	15.487	14.987	15.987	0								0	0	0	0.95273	1	5148	5148		4.897	0.95262	1				11979	18428	6998	7040	11546	11546					0.054207301524684226
GKDSFRVGGEW	11	Unmodified	_GKDSFRVGGEW_					0	0	0			REV__ENST00000319888.10_1_18:2567627-2571211:-|nuORF	REV__ENST00000319888.10_1_18:2567627-2571211:-|nuORF	MSMS	HCT116MG_D190212_S3	3	619.2987670898438	2	619.301644	1236.58874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.598	1	15.684	15.184	16.184	0.085423								0	0	0	0.94269	1	5116	5116		10.151	1.4052	1		+		11980	14881	6999	7041	11547	11547					-0.020095591304198024
GKEKTKNRLKK	11	Unmodified	_GKEKTKNRLKK_					0	0	0			REV__RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	REV__RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	444.2804260253906	3	443.949016	1328.82522	0.42749	0.00018978	-1.1811	-0.00052433	-0.75358	-0.00033455	443.94843953514373	56.175	0.53149	55.868	55.616	56.148	-0.30626					19	9	3	0	0	0	0.74191	1	20956	20956		0.094841	0	1	3364500	+		11981	11294	7000	7042	11548	11548					0.17395792433853785
GKEKTKNRLKK	11	Unmodified	_GKEKTKNRLKK_					0	0	0			REV__RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	REV__RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	444.2804260253906	3	443.949016	1328.82522	0.42749	0.00018978	-1.1811	-0.00052433	-0.75358	-0.00033455	443.94843953514373	56.175	0.53149	55.868	55.616	56.148	-0.30626					19	9	3	0	0	0	0.36631	1	20956	20956		0.094841	0	1	3364500	+		11982	11294	7000	7042	11549	11549					0.17395792433853785
GKEQPPNDQLQ	11	Unmodified	_GKEQPPNDQLQ_					0	0	0			REV__nc|ENSG00000137497|Q14980-5|NUMA1	REV__nc|ENSG00000137497|Q14980-5|NUMA1	MULTI-MSMS	HCT116MG_D190212_S4	4	627.3096923828125	2	627.309666	1252.60478	0.37085	0.00023264	0.55292	0.00034685	0.92377	0.00057949	627.3099851425749	20.943	0.83113	20.734	20.032	20.863	-0.20959					22	15	2	0	0	0	0.69738	1	7165	7165		22.775	0.11688	1	5936700	+		11983	12178	7001	7043	11550	11550					-0.011418976841923723
GKEQPPNDQLQ	11	Unmodified	_GKEQPPNDQLQ_					0	0	0			REV__nc|ENSG00000137497|Q14980-5|NUMA1	REV__nc|ENSG00000137497|Q14980-5|NUMA1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	627.309666	1252.60478	0.46951	0.00029453	0.14764	9.2619E-05	0.61715	0.00038715	627.3093753357524	21.184	0.2081	20.801	20.651	20.859	-0.38288	0.033732	-0.00046257	NaN	22.775	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4267100	+		11984	12178	7001	7043							-0.011418976841923723
GKEQPPNDQLQ	11	Unmodified	_GKEQPPNDQLQ_					0	0	0			REV__nc|ENSG00000137497|Q14980-5|NUMA1	REV__nc|ENSG00000137497|Q14980-5|NUMA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	627.309666	1252.60478	0.37085	0.00023264	0.55292	0.00034685	0.92377	0.00057949	627.3099851425749	20.943	0.83113	20.734	20.032	20.863	-0.20959	-0.033732	4.5905E-05	NaN	22.775	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5936700	+		11985	12178	7001	7043							-0.011418976841923723
GKEVVESEKMF	11	Unmodified	_GKEVVESEKMF_					0	0	0		tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	tr|U7SYG8|U7SYG8_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00874PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	641.8510131835938	2	641.821021	1281.62749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.421	1	23.421	22.921	23.921	0								0	0	0	0.95017	1	8340	8340		7.609	1.8771	1				11986	18516	7002	7044	11551	11551					-0.0020601461094429396
GKGAAGFSI	9	Unmodified	_GKGAAGFSI_					0	0	0		ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	MULTI-MSMS	HCT116MG_D190212_S2	2	807.436767578125	1	807.435929	806.428653	0.85952	0.000694	0.14993	0.00012105	1.0094	0.00081506	807.4359151380772	34.13	0.20731	33.955	33.864	34.072	-0.17512					5	3	2	0	0	0	0.33687	1	12707	12707		26.884	3.7352	1	25362000			11987	3847	7003	7045	11552	11552					0.017695576631808763
GKGMGSGW	8	Unmodified	_GKGMGSGW_					0	0	0		ENST00000369774.8_3_10:105360489-105360906:-|nuORF	ENST00000369774.8_3_10:105360489-105360906:-|nuORF	ENST00000369774.8_3_10:105360489-105360906:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1790771484375	2	390.178881	778.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.694	1	62.694	62.194	63.194	0								0	0	0	0.8837	1	24213	24213		2.5775	0	1				11988	7413	7004	7046	11553	11553					-0.054829307941190564
GKGNGVAV	8	Unmodified	_GKGNGVAV_					0	0	0			REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	701.6708984375	1	701.394064	700.386788	0.63896	0.00044816	-1.6992	-0.0011918	-1.0602	-0.00074362	701.392631208637	43.91	0.3069	43.91	43.73	44.036	0					8	5	2	0	0	0	0.85571	1	16642	16642		4.3292	1.7518	1	64713000	+		11989	12412	7005	7047	11554	11554					0.02461001974654664
GKGNGVAV	8	Unmodified	_GKGNGVAV_					0	0	0			REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	701.394064	700.386788	0.63896	0.00044816	-1.6992	-0.0011918	-1.0602	-0.00074362	701.392631208637	43.91	0.3069	43.91	43.73	44.036	0	-0.28186	0.00045771	NaN	4.3292	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64713000	+		11990	12412	7005	7047							0.02461001974654664
GKGNGVAV	8	Unmodified	_GKGNGVAV_					0	0	0			REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	701.394064	700.386788	0.75609	0.00053032	-2.3748	-0.0016657	-1.6187	-0.0011354	701.3920858988547	44.333	0.47181	44.249	44.063	44.535	-0.084797	0.056676	-1.6189E-05	NaN	4.3292	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76851000	+		11991	12412	7005	7047							0.02461001974654664
GKGNGVAV	8	Unmodified	_GKGNGVAV_					0	0	0			REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	701.394064	700.386788	1.0368	0.00072719	-2.6261	-0.0018419	-1.5893	-0.0011147	701.3919550507101	44.581	0.66333	44.274	44.019	44.682	-0.30759	0.081636	-0.00019243	NaN	4.3292	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33667000	+		11992	12412	7005	7047							0.02461001974654664
GKGNGVAV	8	Unmodified	_GKGNGVAV_					0	0	0			REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	REV__ENST00000464458.1_1_2:95770271-95772347:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	701.394064	700.386788	0.75567	0.00053002	-2.3305	-0.0016346	-1.5748	-0.0011045	701.3921319983258	44.709	0.86389	44.335	44.019	44.883	-0.37326	0.14355	1.4921E-05	NaN	4.3292	58	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50882000	+		11993	12412	7005	7047							0.02461001974654664
GKKAPIEINLE	11	Unmodified	_GKKAPIEINLE_					0	0	0			REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	REV__tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	606.3348388671875	2	606.353345	1210.69214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.992	1	23.992	23.492	24.492	0								0	0	0	0.92983	1	8569	8569		16.149	1.3108	1		+		11994	17714	7006	7048	11555	11555					0.0952192825734528
GKKIKKEQIKE	11	Unmodified	_GKKIKKEQIKE_					0	0	0			REV__ENST00000486028.1_1_19:3574329-3575756:+|nuORF	REV__ENST00000486028.1_1_19:3574329-3575756:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	443.9483642578125	3	443.613522	1327.81874	0.12469	5.5316E-05	0.34267	0.00015201	0.46737	0.00020733	443.61355732459447	16.863	0.20851	16.863	16.733	16.942	0					8	3	3	0	0	0	0.7224	1	5713	5713		13.535	0	1	11576000	+		11995	15988	7007	7049	11556	11556					0.16793854482489223
GKKSDSAHHY	10	Unmodified	_GKKSDSAHHY_					0	0	0			REV__BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	REV__BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	565.2708129882812	2	565.272887	1128.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.115	1	24.115	23.615	24.615	0								0	0	0	0.92272	1	8619	8619		10.824	0.75	1		+		11996	10057	7008	7050	11557	11557					-0.027904013360057434
GKLEKNETP	9	Unmodified	_GKLEKNETP_					0	0	0		tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1	tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1	tr|U7T614|U7T614_FUSNU7,8-dihydro-8-oxoguaninetriphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00337PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	508.27655029296875	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.991	1	32.706	32.206	33.206	-0.28511								0	0	0	0.76603	1	12112	12112		14.838	1.7958	1				11997	18641	7009	7051	11558	11558					0.027888487179893673
GKLFPMKA	8	Unmodified	_GKLFPMKA_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MSMS	HCT116MG_D190212_S3	3	446.25958251953125	2	446.259674	890.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.48	1	31.21	30.71	31.71	-0.27028								0	0	0	0.8837	1	11502	11502		4.756	0.42677	1				11998	6282	7010	7052	11559	11559					0.05516238238965343
GKLIVILLIVV	11	Unmodified	_GKLIVILLIVV_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MSMS	HCT116MG_D190212_S2	2	590.1397705078125	2	590.425585	1178.83662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.839	1	28.523	28.023	29.023	-0.31613								0	0	0	0.95954	1	10538	10538		1.3295	0.9789	1		+		11999	12992	7011	7053	11560	11560					0.2543522147529984
GKLKPNTP	8	Unmodified	_GKLKPNTP_					0	0	0		ENSG00000125780|ENST00000381458|TGM3	ENSG00000125780|ENST00000381458|TGM3	ENSG00000125780|ENST00000381458|TGM3	MSMS	HCT116MG_D190212_S2	2	427.7570495605469	2	427.758352	853.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.198	1	62.062	61.562	62.562	-0.13585								0	0	0	0.8837	1	24104	24104		4.756	0	1				12000	2907	7012	7054	11561	11561					0.06954106105649771
GKLRKLRIIH	10	Unmodified	_GKLRKLRIIH_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MSMS	HCT116MG_D190212_S3	3	411.94512939453125	3	411.947058	1232.81934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.989	1	16.074	15.574	16.574	0.085424								0	0	0	0.97054	1	5273	5273		0.13989	0.017027	1				12001	2813	7013	7055	11562	11562					0.21224738712885483
GKPEKLKRCIR	11	Unmodified	_GKPEKLKRCIR_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MSMS	HCT116MG_D190212_S1	1	443.27252197265625	3	443.271213	1326.79181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.093	1	46.093	45.593	46.593	0								0	0	0	0.95196	1	17479	17479		4.4062	2.6639	1				12002	2931	7014	7056	11563	11563					0.1414846739035056
GKPFLWHIYPQ	11	Unmodified	_GKPFLWHIYPQ_					0	0	0		tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1	tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1	tr|U7SSL4|U7SSL4_FUSNUProtein-argininerhamnosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01306PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	693.3741455078125	2	693.371872	1384.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.365	1	25.365	24.865	25.865	0								0	0	0	0.9465	1	9121	9121		8.1555	1.9497	1				12003	18419	7015	7057	11564	11564					0.05221644593802921
GKPGIICV	8	Unmodified	_GKPGIICV_					0	0	0		nc|ENSG00000013392|Q9UIY3-2|RWDD2A;ENSG00000013392|ENST00000369724|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	MSMS	HCT116MG_D190212_S3	3	393.7293701171875	2	393.730749	785.446945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.275	1	42.97	42.47	43.47	-0.30472								0	0	0	0.8837	1	16142	16142		14.582	1.0738	1				12004	913	7016	7058	11565	11565					0.04563976313534113
GKPHGRGV	8	Unmodified	_GKPHGRGV_					0	0	0		ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENSG00000003393|ENST00000264276|ALS2	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	404.2326965332031	2	404.232836	806.45112	0.25882	0.00010463	-0.14789	-5.9781E-05	0.11094	4.4845E-05	404.2326583782947	47.036	1.4435	46.666	46.178	47.621	-0.37038					76	40	4	0	0	0	0.8672	1	17715	17715		2.3027	2.3027	1	177610000			12005	795	7017	7059	11566	11566					0.040152018514731935
GKPHGRGV	8	Unmodified	_GKPHGRGV_					0	0	0		ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENSG00000003393|ENST00000264276|ALS2	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	404.232836	806.45112	0.028909	1.1686E-05	0.045107	1.8234E-05	0.074016	2.992E-05	404.2327434167688	46.982	1.1834	46.668	46.229	47.412	-0.31405	0.001282	6.5024E-05	NaN	2.3027	62	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138890000			12006	795	7017	7059							0.040152018514731935
GKPIKARIK	9	Unmodified	_GKPIKARIK_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B;LARP4B|p.Q350Sfs*9|1|0.14|ENSG00000107929|chr10:829462-829462|G/-|frameshift_variant	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	MULTI-MSMS	HCT116MG_D190212_S2	2	505.8454895019531	2	505.845294	1009.67603	0.49985	0.00025285	-0.088664	-4.485E-05	0.41119	0.000208	505.8451402562662	60.88	1.5049	60.731	60.476	61.981	-0.14852					41	28	2	0	0	0	0.74917	1	23574	23574		1.8442	1.3195	1	12645000			12007	2136	7018	7060	11567	11567					0.17158311601781406
GKPPETEKY	9	Unmodified	_GKPPETEKY_					0	0	0			REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	MULTI-MSMS	HCT116MG_D190212_S1	1	350.1821594238281	3	350.181835	1047.52368	-0.090546	-3.1708E-05	1.1036	0.00038645	1.013	0.00035474	350.1821401632016	33.842	0.36522	33.842	33.659	34.024	0					13	6	3	0	0	0	0.55732	1	12539	12539		13.615	2.8154	1	89455000	+		12008	10775	7019	7061	11568	11568					0.001814463437312952
GKPPETEKY	9	Unmodified	_GKPPETEKY_					0	0	0			REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	MULTI-MSMS	HCT116MG_D190212_S2	2	350.18231201171875	3	350.181835	1047.52368	-0.18374	-6.4342E-05	0.63755	0.00022326	0.45381	0.00015892	350.18208360353003	33.961	0.41509	33.786	33.657	34.072	-0.17512					19	7	4	0	0	0	0.55732	1	12624	12624		13.615	2.8154	1	500140000	+		12009	10775	7019	7061	11569	11569					0.001814463437312952
GKPPETEKY	9	Unmodified	_GKPPETEKY_					0	0	0			REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	350.181835	1047.52368	-0.090546	-3.1708E-05	1.1036	0.00038645	1.013	0.00035474	350.1821401632016	33.842	0.36522	33.842	33.659	34.024	0	-0.00017449	0.00021521	NaN	13.615	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89455000	+		12010	10775	7019	7061							0.001814463437312952
GKPPETEKY	9	Unmodified	_GKPPETEKY_					0	0	0			REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	350.181835	1047.52368	-0.18374	-6.4342E-05	0.63755	0.00022326	0.45381	0.00015892	350.18208360353003	33.961	0.41509	33.786	33.657	34.072	-0.17512	-0.056585	-0.00027435	NaN	13.615	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500140000	+		12011	10775	7019	7061							0.001814463437312952
GKPPETEKY	9	Unmodified	_GKPPETEKY_					0	0	0			REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	REV__nc|ENSG00000072364|Q9UHB7-2|AFF4	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	350.181835	1047.52368	-0.060568	-2.121E-05	0.98135	0.00034365	0.92078	0.00032244	350.1821803696094	34.194	0.46848	33.899	33.663	34.131	-0.2942	0.05676	8.6829E-05	NaN	13.615	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33405000	+		12012	10775	7019	7061							0.001814463437312952
GKPPKSRVLLK	11	Unmodified	_GKPPKSRVLLK_					0	0	0		ENST00000574478.1_1_17:18651366-18682393:+|nuORF;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10	ENST00000574478.1_1_17:18651366-18682393:+|nuORF	ENST00000574478.1_1_17:18651366-18682393:+|nuORF	MSMS	HCT116MG_D190212_S3	3	408.26959228515625	3	408.271319	1221.79213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.802	1	52.495	51.995	52.995	-0.30639								0	0	0	0.9613	1	19969	19969		0.40827	0.24894	1				12013	5222	7020	7062	11570	11570					0.1901021038181625
GKPSHLRG	8	Unmodified	_GKPSHLRG_					0	0	0		ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	MULTI-MSMS	HCT116MG_D190212_S3	3	426.24554443359375	2	426.245944	850.477334	0.19965	8.5101E-05	0.10402	4.4339E-05	0.30368	0.00012944	426.24591386461924	48.274	1.3554	47.958	47.514	48.87	-0.31596					53	25	4	0	0	0	0.83605	1	18303	18303		7.2892	7.2892	1	102530000			12014	6196	7021	7063	11571	11571					0.046114710229517186
GKPSHLRG	8	Unmodified	_GKPSHLRG_					0	0	0		ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	MULTI-MSMS	HCT116MG_D190212_S4	4	426.2456359863281	2	426.245944	850.477334	0.13999	5.9668E-05	0.26105	0.00011127	0.40103	0.00017094	426.2459877880193	48.173	1.2891	47.806	47.419	48.708	-0.36728					74	32	4	0	0	0	0.83605	1	17974	17974		7.2892	7.2892	1	129380000			12015	6196	7021	7063	11572	11572					0.046114710229517186
GKPSLLLT	8	Unmodified	_GKPSLLLT_					0	0	0			REV__ENST00000469990.1_1_11:555480-556365:-|nuORF	REV__ENST00000469990.1_1_11:555480-556365:-|nuORF	MSMS	HCT116MG_D190212_S4	4	414.76190185546875	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.036	1	51.691	51.191	52.191	-0.34538								0	0	0	0.8837	1	19386	19386		0.69038	0	1		+		12016	15860	7022	7064	11573	11573					0.09099874391165486
GKPSLLLT	8	Unmodified	_GKPSLLLT_					0	0	0			REV__ENST00000469990.1_1_11:555480-556365:-|nuORF	REV__ENST00000469990.1_1_11:555480-556365:-|nuORF	MSMS	HCT116MG_D190212_S4	4	414.7615051269531	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.307	1	52.972	52.472	53.472	-0.33473								0	0	0	0.8837	1	19898	19898		0.69038	0	1		+		12017	15860	7022	7064	11574	11574					0.09099874391165486
GKPVAALV	8	Unmodified	_GKPVAALV_					0	0	0		tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1	tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1	tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	377.7431640625	2	377.744714	753.474875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.977	1	50.798	50.298	51.298	-0.17868								0	0	0	0.8837	1	19548	19548		0.69038	0	1				12018	18589	7023	7065	11575	11575					0.08827622565263482
GKPYRRPVP	9	Unmodified	_GKPYRRPVP_					0	0	0			REV__sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	REV__sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	MSMS	HCT116MG_D190212_S1	1	357.21319580078125	3	357.213692	1068.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.633	1	44.633	44.133	45.133	0								0	0	0	0.76967	1	16890	16890		1.0715	0	1		+		12019	17547	7024	7066	11576	11576					0.08768264045261276
GKQGKVGKRGP	11	Unmodified	_GKQGKVGKRGP_					0	0	0			REV__ENSG00000050767|ENST00000390654|COL23A1	REV__ENSG00000050767|ENST00000390654|COL23A1	MSMS	HCT116MG_D190212_S2	2	371.2274169921875	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.148	1	62.012	61.512	62.512	-0.13585								0	0	0	0.96121	1	24084	24084		0.45452	0.053801	1		+		12020	10622	7025	7067	11577	11577					0.11127034102696598
GKQGKVGKRGP	11	Unmodified	_GKQGKVGKRGP_					0	0	0			REV__ENSG00000050767|ENST00000390654|COL23A1	REV__ENSG00000050767|ENST00000390654|COL23A1	MSMS	HCT116MG_D190212_S4	4	371.22802734375	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.93	1	61.675	61.175	62.175	-0.25457								0	0	0	0.95976	1	23376	23376		1.2148	0.25256	1		+		12021	10622	7025	7067	11578	11578					0.11127034102696598
GKQGKVGKRGP	11	Unmodified	_GKQGKVGKRGP_					0	0	0			REV__ENSG00000050767|ENST00000390654|COL23A1	REV__ENSG00000050767|ENST00000390654|COL23A1	MSMS	HCT116MG_D190212_S4	4	371.2275085449219	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.568	1	62.319	61.819	62.819	-0.24919								0	0	0	0.96121	1	23627	23627		0.45452	0.053801	1		+		12022	10622	7025	7067	11579	11579					0.11127034102696598
GKQGPIRISR	10	Unmodified	_GKQGPIRISR_					0	0	0		ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant;nc|ENSG00000134028|O15204-2|ADAMDEC1;ENSG00000134028|ENST00000256412|ADAMDEC1	ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant	ADAMDEC1|p.K341Rfs*7|1|0.55|ENSG00000134028|chr8:24400173-24400173|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	371.22735595703125	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.442	1	44.069	43.569	44.569	-0.37373								0	0	0	0.96804	1	16373	16373		0.69767	0.24315	1				12023	42	7026	7068	11580	11580					0.1112703410267386
GKQQLLIGA	9	Unmodified	_GKQQLLIGA_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;ENST00000406551.2_1_6:150202103-150202502:+|nuORF	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	HCT116MG_D190212_S3	3	464.28485107421875	2	464.284734	926.554916	0.4122	0.00019138	-0.35154	-0.00016321	0.060666	2.8166E-05	464.28464031876734	42.786	0.25994	42.482	42.352	42.612	-0.30472					6	4	2	0	0	0	0.2682	1	15984	15984		34.102	1.3168	1	4349500			12024	3363	7027	7069	11581	11581					0.0887006416847953
GKQQLLIGA	9	Unmodified	_GKQQLLIGA_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;ENST00000406551.2_1_6:150202103-150202502:+|nuORF	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MATCH	HCT116MG_D190212_S2	2		2	464.284734	926.554916	0.42855	0.00019897	-0.43323	-0.00020114	-0.0046754	-2.1707E-06	464.28453572482834	42.577	0.20771	42.507	42.377	42.585	-0.069984	0.012919	-6.6042E-05	NaN	34.102	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11688000			12025	3363	7027	7069							0.0887006416847953
GKVFNLNCS	9	Unmodified	_GKVFNLNCS_					0	0	0		ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	491.24505615234375	2	491.244752	980.474951	0.053659	2.636E-05	0.59012	0.00028989	0.64378	0.00031625	491.2451246294627	23.964	0.26068	23.903	23.686	23.947	-0.061449					7	4	2	0	0	0	0.47809	1	8486	8486		18.146	2.2992	1	1861700			12026	5856	7028	7070	11582	11582					-0.016067454970425388
GKWPYWFKKWK	11	Unmodified	_GKWPYWFKKWK_					0	0	0		SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant	SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant	SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	777.4226684570312	2	777.424439	1552.83433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.642	1	24.642	24.142	25.142	0								0	0	0	0.9598	1	8831	8831		1.1933	0.23107	1				12027	18173	7029	7071	11583	11583					0.0800218579020111
GKYYLKLPP	9	Unmodified	_GKYYLKLPP_					0	0	0			REV__tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	REV__tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	539.8168334960938	2	539.81841	1077.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.293	1	37.19	36.69	37.69	-0.10318								0	0	0	0.64498	1	13974	13974		21.747	5.8995	1		+		12028	17776	7030	7072	11584	11584					0.08656094379398382
GLAAAHAR	8	Unmodified	_GLAAAHAR_					0	0	0			REV__ADCK5|p.A411T|1|0.25|ENSG00000173137|chr8:144392309-144392309|G/A|missense_variant	REV__ADCK5|p.A411T|1|0.25|ENSG00000173137|chr8:144392309-144392309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	383.7196044921875	2	383.719562	765.42457	-0.070205	-2.6939E-05	0.57542	0.0002208	0.50521	0.00019386	383.71953276000124	21.859	1.0486	21.86	21.306	22.354	0.00074577					41	19	3	0	0	0	0.81097	1	7750	7750		10.183	0	1	45492000	+		12029	9865	7031	7073	11585	11585					0.03247512960126642
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MSMS	HCT116MG_D190212_S1	1	557.8463134765625	2	557.845156	1113.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.922	1	41.922	41.422	42.422	0								0	0	0	0.80652	1	15798	15798		32.037	8.0169	1				12030	232	7032	7074	11586	11586					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	HCT116MG_D190212_S2	2	557.8450317382812	2	557.845156	1113.67576	0.4648	0.00025929	-0.057567	-3.2113E-05	0.40723	0.00022717	557.8451094556762	41.799	0.26019	41.731	41.601	41.861	-0.068199					9	4	3	0	0	0	2.8263E-07	1	15813	15813		190.03	34.078	1	56031000			12031	232	7032	7074	11587	11587					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MSMS	HCT116MG_D190212_S2	2	372.23236083984375	3	372.23253	1113.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.879	1	41.811	41.311	42.311	-0.068199								0	0	0	0.58002	1	15837	15837		30.354	8.2455	1				12032	232	7032	7074	11588	11588					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-SECPEP	HCT116MG_D190212_S2	2	372.5451354980469	3	372.23253	1113.67576	-0.10571	-3.9348E-05	-0.32988	-0.00012279	-0.43559	-0.00016214	372.232360735724	41.85	0.20774	41.782	41.601	41.808	-0.068199					6	3	2	0	0	0	0.36301	1	15770	15770		10.527	4.744	1	15511000			12033	232	7032	7074	11589	11589					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MULTI-MSMS	HCT116MG_D190212_S3	3	557.8449096679688	2	557.845156	1113.67576	0.38326	0.0002138	-0.29033	-0.00016196	0.092931	5.1841E-05	557.8449166006912	42.069	0.20789	41.766	41.625	41.833	-0.30257					5	3	2	0	0	0	0.63066	1	15685	15685		32.037	11.623	1	3808300			12034	232	7032	7074	11590	11590					0.12346847091271229
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2870483398438	2	513.286943	1024.55933	0.2327	0.00011944	-0.047019	-2.4134E-05	0.18568	9.5305E-05	513.2868901649665	54.772	0.20542	54.584	54.457	54.662	-0.18801					10	3	4	0	0	0	0.053544	1	21098	21098		72.968	24.622	1	203950000			12035	312	7033	7075	11591	11591					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1025.5682373046875	1	1025.56661	1024.55933	0.55524	0.00056943	-0.01333	-1.3671E-05	0.54191	0.00055576	1025.5665565989225	54.773	0.20542	54.585	54.457	54.662	-0.18797					5	3	2	0	0	0	0.053544	1	21112	21112		72.968	20.7	1	27341000			12036	312	7033	7075	11592	11592					0.04803528591378381
GLAEAVLEA	9	Unmodified	_GLAEAVLEA_					0	0	0		nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MULTI-MSMS	HCT116MG_D190212_S1	1	872.4739990234375	1	872.472374	871.465098	0.77816	0.00067893	0.52308	0.00045638	1.3012	0.0011353	872.4730214321655	47.036	0.25886	47.036	46.855	47.114	0					7	4	2	0	0	0	0.050578	1	17866	17866		74.423	3.2892	1	23383000			12037	6704	7034	7076	11593	11593					0.024223897692422725
GLAEAVLEA	9	Unmodified	_GLAEAVLEA_					0	0	0		nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MULTI-MSMS	HCT116MG_D190212_S2	2	872.4725952148438	1	872.472374	871.465098	1.0163	0.00088665	-0.24659	-0.00021515	0.76966	0.00067151	872.4719788841209	47.226	0.51682	47.104	46.922	47.439	-0.12175					21	9	3	0	0	0	0.050578	1	18011	18011		74.423	3.2892	1	122480000			12038	6704	7034	7076	11594	11594					0.024223897692422725
GLAEAVLEA	9	Unmodified	_GLAEAVLEA_					0	0	0		nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MULTI-MSMS	HCT116MG_D190212_S3	3	872.4717407226562	1	872.472374	871.465098	0.68695	0.00059935	-0.11506	-0.00010039	0.57189	0.00049896	872.4721295047757	47.456	0.35023	47.141	46.957	47.308	-0.31525					12	7	2	0	0	0	0.065014	1	17816	17816		67.344	3.1075	1	16948000			12039	6704	7034	7076	11595	11595					0.024223897692422725
GLAEHLYLA	9	Unmodified	_GLAEHLYLA_					0	0	0		ENST00000487209.5_1_1:43830638-43833598:-|nuORF;ENST00000479686.5_1_1:43830638-43833178:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7689208984375	2	493.768917	985.523281	0.29337	0.00014485	-0.16126	-7.9623E-05	0.13211	6.5232E-05	493.7688152161977	46.35	0.30994	46.239	46.059	46.369	-0.11121					12	5	3	0	0	0	0.0093514	1	17658	17658		114.94	64.089	1	49043000			12040	8231	7035	7077	11596	11596					0.0299407141451411
GLAEHLYLA	9	Unmodified	_GLAEHLYLA_					0	0	0		ENST00000487209.5_1_1:43830638-43833598:-|nuORF;ENST00000479686.5_1_1:43830638-43833178:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	493.7688903808594	2	493.768917	985.523281	0.40978	0.00020234	-0.047817	-2.3611E-05	0.36196	0.00017872	493.76868954040776	46.618	0.31262	46.304	46.125	46.438	-0.31394					11	5	3	0	0	0	0.043314	1	17492	17492		77.984	47.76	1	10966000			12041	8231	7035	7077	11597	11597					0.0299407141451411
GLAEHLYLA	9	Unmodified	_GLAEHLYLA_					0	0	0		ENST00000487209.5_1_1:43830638-43833598:-|nuORF;ENST00000479686.5_1_1:43830638-43833178:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	493.768917	985.523281	0.3745	0.00018491	-0.19422	-9.5899E-05	0.18028	8.9015E-05	493.76868669272113	46.674	0.24044	46.302	46.14	46.38	-0.37134	0.020386	-3.8849E-05	NaN	114.94	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4969300			12042	8231	7035	7077							0.0299407141451411
GLAERISVL	9	Unmodified	_GLAERISVL_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2899475097656	2	479.290017	956.565481	0.67027	0.00032126	-0.19948	-9.561E-05	0.47079	0.00022565	479.28982460484644	46.851	0.25697	46.74	46.574	46.831	-0.11121					7	4	2	0	0	0	0.053544	1	17877	17877		72.968	7.7329	1	26729000			12043	1999	7036	7078	11598	11598					0.0854604682289164
GLAERISVL	9	Unmodified	_GLAERISVL_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	479.290017	956.565481	0.23438	0.00011234	-1.3185	-0.00063196	-1.0842	-0.00051963	479.2892334565173	46.829	0.20782	46.829	46.647	46.855	0	0.044229	-0.00058357	NaN	72.968	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11421000			12044	1999	7036	7078							0.0854604682289164
GLAESVSTL	9	Unmodified	_GLAESVSTL_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S1	1	876.468017578125	1	876.467289	875.460012	0.59071	0.00051774	-0.97927	-0.0008583	-0.38856	-0.00034056	876.4674060011413	44.031	0.25676	44.031	43.884	44.141	0					6	4	2	0	0	0	0.065014	1	16667	16667		67.344	12.57	1	17772000			12045	9571	7037	7079	11599	11599					0.01730085906626755
GLAESVSTL	9	Unmodified	_GLAESVSTL_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S2	2	876.4676513671875	1	876.467289	875.460012	0.67948	0.00059554	0.20705	0.00018147	0.88653	0.00077702	876.4673583832484	44.071	0.25616	43.993	43.865	44.121	-0.078373					10	4	3	0	0	0	0.065014	1	16729	16729		67.344	12.57	1	53301000			12046	9571	7037	7079	11600	11600					0.01730085906626755
GLAEVAAAV	9	Unmodified	_GLAEVAAAV_					0	0	0		ENSG00000170684|ENST00000303809|ZNF296	ENSG00000170684|ENST00000303809|ZNF296	ENSG00000170684|ENST00000303809|ZNF296	MSMS	HCT116MG_D190212_S4	4	400.7288818359375	2	400.729261	799.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.766	1	34.38	33.88	34.88	-0.38606								0	0	0	0.11425	1	12707	12707		53.576	5.2297	1				12047	5151	7038	7080	11601	11601					0.03622424460365892
GLAGEGSP	8	Unmodified	_GLAGEGSP_					0	0	0		ENST00000566366.1_1_1:40255092-40255185:+|nuORF	ENST00000566366.1_1_1:40255092-40255185:+|nuORF	ENST00000566366.1_1_1:40255092-40255185:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	687.3309326171875	1	687.330795	686.323519	1.0294	0.00070754	-0.62983	-0.0004329	0.39958	0.00027464	687.3302266309919	26.522	0.88594	26.372	25.629	26.515	-0.14924					25	16	2	0	0	0	0.55314	1	9433	9433		36.466	0	1	5265700			12048	8865	7039	7081	11602	11602					-0.03218983533236042
GLAGEGSP	8	Unmodified	_GLAGEGSP_					0	0	0		ENST00000566366.1_1_1:40255092-40255185:+|nuORF	ENST00000566366.1_1_1:40255092-40255185:+|nuORF	ENST00000566366.1_1_1:40255092-40255185:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	687.330795	686.323519	0.64238	0.00044153	-0.026075	-1.7922E-05	0.61631	0.00042361	687.3306672655652	26.599	1.1443	26.298	25.401	26.545	-0.30087	-0.037348	0.00024488	NaN	36.466	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5258200			12049	8865	7039	7081							-0.03218983533236042
GLAGGHVR	8	Unmodified	_GLAGGHVR_					0	0	0			REV__nc|ENSG00000160410|Q8TBC3-2|SHKBP1	REV__nc|ENSG00000160410|Q8TBC3-2|SHKBP1	MULTI-SECPEP	HCT116MG_D190212_S4	4	384.5192565917969	2	383.719562	765.42457	0.070847	2.7185E-05	-0.18734	-7.1884E-05	-0.11649	-4.4699E-05	383.7193999471694	20.678	0.41571	20.476	20.3	20.716	-0.20133					12	7	3	0	0	0	0.3238	1	7152	7152		2.5775	1.7838	1	5502900	+		12050	12831	7040	7082	11603	11603					0.03247512960126642
GLAGLGALHK	10	Unmodified	_GLAGLGALHK_					0	0	0			REV__nc|ENSG00000147133|P21675-25|TAF1	REV__nc|ENSG00000147133|P21675-25|TAF1	MULTI-MSMS	HCT116MG_D190212_S1	1	469.03607177734375	2	468.784902	935.55525	0.26846	0.00012585	0.022747	1.0663E-05	0.2912	0.00013651	468.7847713935905	15.458	0.15632	15.458	15.38	15.536	0					4	2	2	0	0	0	0.81435	1	5163	5163		10.824	1.4765	1	2490900	+		12051	11742	7041	7083	11604	11604					0.08489483888320137
GLAKLIADV	9	Unmodified	_GLAKLIADV_					0	0	0		ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	HCT116MG_D190212_S2	2	450.2813720703125	2	450.28166	898.548768	0.1335	6.0114E-05	-0.012191	-5.4894E-06	0.12131	5.4624E-05	450.28153236301364	51.497	0.20653	51.314	51.218	51.424	-0.18369					6	3	2	0	0	0	0.066823	1	19780	19780		66.457	2.2204	1	21555000			12052	5015	7042	7084	11605	11605					0.09543545936935516
GLAKSIHHA	9	Unmodified	_GLAKSIHHA_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	HCT116MG_D190212_S2	2	467.2669372558594	2	467.266876	932.519199	0.22196	0.00010372	-0.059266	-2.7693E-05	0.1627	7.6024E-05	467.2667821596562	17.441	0.26132	17.091	16.978	17.239	-0.34933					8	4	3	0	0	0	0.066823	1	5947	5947		66.457	37.97	1	18293000			12053	5164	7043	7085	11606	11606					0.05024026711453189
GLAKSIHHA	9	Unmodified	_GLAKSIHHA_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	467.266876	932.519199	0.2457	0.00011481	0.13476	6.2968E-05	0.38046	0.00017778	467.2668868932524	16.707	0.15604	16.707	16.629	16.785	0	-0.19213	8.1842E-05	NaN	66.457	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5049300			12054	5164	7043	7085							0.05024026711453189
GLALSAILINP	11	Unmodified	_GLALSAILINP_					0	0	0			REV__EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant	REV__EDNRB|p.Y293Ifs*3|4|0.17|ENSG00000136160|chr13:77901132-77901132|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	541.3341674804688	2	541.334424	1080.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.78	1	34.483	33.983	34.983	-0.29707								0	0	0	0.86874	1	12814	12814		24.021	1.2843	1		+		12055	10436	7044	7086	11607	11607					0.11719462062569619
GLAPQIHDL	9	Unmodified	_GLAPQIHDL_					0	0	0		IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	482.26708984375	2	482.266542	962.51853	0.27415	0.00013221	0.15201	7.3307E-05	0.42616	0.00020552	482.2665847097781	41.85	0.20787	41.782	41.653	41.861	-0.068199					6	3	2	0	0	0	0.016134	1	15841	15841		100.37	39.982	1	12282000			12056	5746	7045	7087	11608	11608					0.03577187271753246
GLAPQIHDL	9	Unmodified	_GLAPQIHDL_					0	0	0		IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	482.266542	962.51853	0.35719	0.00017226	0.33051	0.0001594	0.6877	0.00033166	482.26658274106717	41.835	0.26082	41.835	41.758	42.019	0	0.026715	7.9952E-05	NaN	100.37	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7803500			12057	5746	7045	7087							0.03577187271753246
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	HCT116MG_D190212_S1	1	903.4788818359375	1	903.478188	902.470912	0.77102	0.0006966	0.20948	0.00018926	0.98051	0.00088587	903.4782504128166	37.068	0.51304	37.068	36.835	37.348	0					23	9	4	0	0	0	0.012168	1	13818	13818		108	35.029	1	406230000			12058	6688	7046	7088	11609	11609					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	HCT116MG_D190212_S1	1	452.24237060546875	2	452.242732	902.470912	0.088072	3.983E-05	0.2184	9.8771E-05	0.30647	0.0001386	452.24271463066583	37.016	0.36283	37.016	36.835	37.197	0					14	6	3	0	0	0	0.007119	1	13826	13826		120.45	41.722	1	49774000			12059	6688	7046	7088	11610	11610					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	HCT116MG_D190212_S2	2	903.4786987304688	1	903.478188	902.470912	0.75147	0.00067894	0.00091141	8.2344E-07	0.75238	0.00067976	903.4781116146038	37.103	0.5156	36.988	36.757	37.272	-0.11478					28	9	4	0	0	0	0.007119	1	13877	13877		120.45	37.921	1	1580599999.9999998			12060	6688	7046	7088	11611	11611					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	HCT116MG_D190212_S2	2	452.24267578125	2	452.242732	902.470912	0.048868	2.21E-05	-0.0036466	-1.6491E-06	0.045221	2.0451E-05	452.2426415541357	37.052	0.46466	36.937	36.808	37.272	-0.11478					20	8	4	0	0	0	0.007119	1	13895	13895		120.45	38.56	1	258420000			12061	6688	7046	7088	11612	11612					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	HCT116MG_D190212_S3	3	903.4786987304688	1	903.478188	902.470912	0.80643	0.00072859	0.038583	3.4859E-05	0.84501	0.00076345	903.4780650477252	37.304	0.46795	37.002	36.769	37.237	-0.30137					23	8	4	0	0	0	0.012168	1	13793	13793		108	38.892	1	90684000			12062	6688	7046	7088	11613	11613					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	HCT116MG_D190212_S3	3	452.2428283691406	2	452.242732	902.470912	0.20933	9.4669E-05	0.030512	1.3799E-05	0.23984	0.00010847	452.24267858631276	37.268	0.36411	36.967	36.821	37.185	-0.30137					11	6	2	0	0	0	0.007119	1	13800	13800		120.45	38.56	1	28574000			12063	6688	7046	7088	11614	11614					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	HCT116MG_D190212_S4	4	903.4788208007812	1	903.478188	902.470912	0.59589	0.00053837	0.34932	0.0003156	0.94521	0.00085397	903.4782456683962	37.37	0.30868	36.986	36.823	37.131	-0.3839					11	5	3	0	0	0	0.012168	1	13719	13719		108	38.892	1	10545000			12064	6688	7046	7088	11615	11615					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MATCH	HCT116MG_D190212_S4	4		2	452.242732	902.470912	0.22158	0.00010021	-0.85505	-0.00038669	-0.63347	-0.00028648	452.2422566282632	37.349	0.15318	36.965	36.874	37.028	-0.3839	-0.0063859	-0.00079909	NaN	120.45	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2709700			12065	6688	7046	7088							0.015774882809068913
GLATPGAP	8	Unmodified	_GLATPGAP_					0	0	0			REV__ENSG00000198455|ENST00000374888|ZXDB	REV__ENSG00000198455|ENST00000374888|ZXDB	MULTI-MSMS	HCT116MG_D190212_S4	4	683.37255859375	1	683.372266	682.36499	0.65161	0.00044529	-0.038355	-2.621E-05	0.61325	0.00041908	683.3719634683043	30.46	1.5958	30.103	29.285	30.881	-0.3571					82	55	3	0	0	0	0.19622	1	11122	11122		74.396	0	1	36924000	+		12066	14125	7047	7089	11616	11616					0.011101972260917137
GLCNNNDE	8	Unmodified	_GLCNNNDE_					0	0	0		ZNRF3|p.F222Sfs*21|1|0.05|ENSG00000183579|chr22:29044808-29044808|T/-|frameshift_variant;ZNRF3|p.A281Pfs*58|1|0.48|ENSG00000183579|chr22:29046809-29046809|G/-|frameshift_variant;ZNRF3|p.R493Gfs*77|1|0.47|ENSG00000183579|chr22:29049655-29049655|C/-|frameshift_variant;ZNRF3|p.G791Afs*14|1|0.13|ENSG00000183579|chr22:29050549-29050549|G/-|frameshift_variant;ZNRF3|p.P815Rfs*11|1|0.16|ENSG00000183579|chr22:29050623-29050623|A/-|frameshift_variant;ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3	ZNRF3|p.F222Sfs*21|1|0.05|ENSG00000183579|chr22:29044808-29044808|T/-|frameshift_variant	ZNRF3|p.F222Sfs*21|1|0.05|ENSG00000183579|chr22:29044808-29044808|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	439.66845703125	2	439.669074	877.323595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.229	1	13.064	12.564	13.564	-0.16496								0	0	0	0.8837	1	4141	4141		0.79363	0	1				12067	5724	7048	7090	11617	11617					-0.11997351595539385
GLDAIYMLDNA	11	Unmodified	_GLDAIYMLDNA_					0	0	0			REV__ENST00000400706.3_1_12:88275-90926:+|nuORF	REV__ENST00000400706.3_1_12:88275-90926:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	598.286865234375	2	598.286814	1194.55907	0.64496	0.00038587	0.41106	0.00024593	1.056	0.0006318	598.2872084382689	21.045	0.41507	20.662	20.546	20.961	-0.38288					9	7	2	0	0	0	0.71271	1	7428	7428		17.113	0.96379	1	4918200	+		12068	15392	7049	7091	11618	11618					-0.030422591907608876
GLDAIYMLDNA	11	Unmodified	_GLDAIYMLDNA_					0	0	0			REV__ENST00000400706.3_1_12:88275-90926:+|nuORF	REV__ENST00000400706.3_1_12:88275-90926:+|nuORF	MSMS	HCT116MG_D190212_S4	4	598.2888793945312	2	598.286814	1194.55907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.939	1	20.729	20.229	21.229	-0.20959								0	0	0	0.92235	1	7199	7199		17.113	2.7075	1		+		12069	15392	7049	7091	11619	11619					-0.030422591907608876
GLDAIYMLDNA	11	Unmodified	_GLDAIYMLDNA_					0	0	0			REV__ENST00000400706.3_1_12:88275-90926:+|nuORF	REV__ENST00000400706.3_1_12:88275-90926:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	598.286814	1194.55907	0.64496	0.00038587	0.41106	0.00024593	1.056	0.0006318	598.2872084382689	21.045	0.41507	20.662	20.546	20.961	-0.38288	0	0	NaN	17.113	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4918200	+		12070	15392	7049	7091							-0.030422591907608876
GLDCTCWPPC	10	Unmodified	_GLDCTCWPPC_					0	0	0			REV__ENST00000566662.5_1_16:78143676-78198155:+|nuORF	REV__ENST00000566662.5_1_16:78143676-78198155:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.33251953125	2	547.70883	1093.40311	0.2206	0.00012082	0.58137	0.00031842	0.80196	0.00043924	547.7089748330957	39.857	0.30915	39.784	39.584	39.894	-0.072838					7	5	2	0	0	0	0.3111	1	15007	15007		3.9444	0	1	5493500	+		12071	16549	7050	7092	11620	11620					-0.13985744237402287
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	HCT116MG_D190212_S1	1	558.3184814453125	2	558.318971	1114.62339	0.33253	0.00018566	-0.8662	-0.00048362	-0.53368	-0.00029796	558.318411592997	43.652	0.25737	43.652	43.524	43.781	0					9	4	3	0	0	0	2.0129E-06	1	16512	16512		202.97	92.295	1	122900000			12072	4249	7051	7093	11621	11621					0.0706626395767671
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MSMS	HCT116MG_D190212_S1	1	372.54779052734375	3	372.548406	1114.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.716	1	43.716	43.216	44.216	0								0	0	0	0.068471	1	16523	16523		68.76	32.365	1				12073	4249	7051	7093	11622	11622					0.0706626395767671
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	HCT116MG_D190212_S2	2	558.319091796875	2	558.318971	1114.62339	0.73626	0.00041107	-0.37723	-0.00021062	0.35902	0.00020045	558.318729328059	43.707	0.36014	43.628	43.453	43.813	-0.078373					18	6	4	0	0	0	0.0011309	1	16565	16565		177.58	74.157	1	266770000			12074	4249	7051	7093	11623	11623					0.0706626395767671
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	HCT116MG_D190212_S2	2	372.54827880859375	3	372.548406	1114.62339	0.16309	6.0759E-05	-0.28975	-0.00010795	-0.12666	-4.7188E-05	372.54821285773994	43.71	0.30846	43.632	43.453	43.762	-0.078369					16	5	4	0	0	0	0.029378	1	16583	16583		80.896	38.06	1	115060000			12075	4249	7051	7093	11624	11624					0.0706626395767671
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MSMS	HCT116MG_D190212_S3	3	558.3201904296875	2	558.318971	1114.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.975	1	43.669	43.169	44.169	-0.30616								0	0	0	0.42508	1	16425	16425		51.488	22.993	1				12076	4249	7051	7093	11625	11625					0.0706626395767671
GLDDKLLHY	9	Unmodified	_GLDDKLLHY_					0	0	0		nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	MSMS	HCT116MG_D190212_S1	1	537.2853393554688	2	537.284931	1072.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.973	1	40.973	40.473	41.473	0								0	0	0	0.01225	1	15415	15415		103.42	43.346	1				12077	4283	7052	7094	11626	11626					0.021934390976639406
GLDDKLLHY	9	Unmodified	_GLDDKLLHY_					0	0	0		nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	MULTI-MSMS	HCT116MG_D190212_S2	2	537.286376953125	2	537.284931	1072.55531	0.54312	0.00029181	0.089051	4.7846E-05	0.63217	0.00033966	537.2849403080386	40.924	0.46527	40.855	40.571	41.036	-0.069626					18	8	3	0	0	0	0.0053819	1	15441	15441		134.3	55.568	1	118620000			12078	4283	7052	7094	11627	11627					0.021934390976639406
GLDDKLLHY	9	Unmodified	_GLDDKLLHY_					0	0	0		nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	MULTI-MSMS	HCT116MG_D190212_S2	2	358.52545166015625	3	358.525713	1072.55531	-0.10119	-3.6281E-05	0.13666	4.8997E-05	0.035468	1.2716E-05	358.5256924917914	40.924	0.36247	40.855	40.673	41.036	-0.069626					10	6	2	0	0	0	0.057285	1	15454	15454		55.503	20.571	1	33013000			12079	4283	7052	7094	11628	11628					0.021934390976639406
GLDDKLLHY	9	Unmodified	_GLDDKLLHY_					0	0	0		nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	MULTI-MSMS	HCT116MG_D190212_S3	3	537.2852172851562	2	537.284931	1072.55531	0.52463	0.00028188	-0.5366	-0.00028831	-0.011969	-6.4308E-06	537.2849064366085	41.134	0.26159	40.833	40.684	40.945	-0.30185					6	4	2	0	0	0	0.2853	1	15321	15321		32.305	13.049	1	3606000			12080	4283	7052	7094	11629	11629					0.021934390976639406
GLDDRSPQAP	10	Unmodified	_GLDDRSPQAP_					0	0	0		BCORL1|p.P1681Qfs*20|7|0.43|ENSG00000085185|chrX:130056036-130056036|C/-|frameshift_variant	BCORL1|p.P1681Qfs*20|7|0.43|ENSG00000085185|chrX:130056036-130056036|C/-|frameshift_variant	BCORL1|p.P1681Qfs*20|7|0.43|ENSG00000085185|chrX:130056036-130056036|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.8118286132812	2	528.259445	1054.50434	0.054228	2.8647E-05	-0.2671	-0.0001411	-0.21287	-0.00011245	528.2592928323505	18.45	0.3136	18.087	17.851	18.165	-0.36325					7	5	2	0	0	0	0.28496	1	6271	6271		9.3831	1.2276	1	6182400			12081	260	7053	7095	11630	11630					-0.02073509947194907
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	HCT116MG_D190212_S1	1	510.2740783691406	2	510.274032	1018.53351	0.32146	0.00016403	-0.081989	-4.1837E-05	0.23947	0.0001222	510.27391758884954	57.282	0.20791	57.282	57.204	57.412	0					7	3	3	0	0	0	0.013464	1	22062	22062		104.8	23.186	1	27817000			12082	6236	7054	7096	11631	11631					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	HCT116MG_D190212_S2	2	510.27423095703125	2	510.274032	1018.53351	0.39039	0.00019921	0.13136	6.7027E-05	0.52175	0.00026623	510.27401406937025	57.516	0.25875	57.341	57.211	57.469	-0.17494					9	4	3	0	0	0	0.043314	1	22231	22231		77.984	10.64	1	71873000			12083	6236	7054	7096	11632	11632					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	HCT116MG_D190212_S2	2	1019.541748046875	1	1019.54079	1018.53351	0.84551	0.00086203	0.28248	0.000288	1.128	0.00115	1019.5409106190303	57.516	0.25828	57.341	57.263	57.521	-0.17494					7	4	3	0	0	0	0.057285	1	22235	22235		71.134	3.7897	1	42881000			12084	6236	7054	7096	11633	11633					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1019.54079	1018.53351	0.80771	0.00082349	-0.062958	-6.4188E-05	0.74475	0.0007593	1019.5407987073313	57.282	0.15596	57.282	57.204	57.36	0	-0.029604	-4.4756E-05	NaN	71.134	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25959000			12085	6236	7054	7096							0.024986343491036678
GLDEPAPG	8	Unmodified	_GLDEPAPG_					0	0	0		ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3	ENSG00000090565|ENST00000262305|RAB11FIP3	ENSG00000090565|ENST00000262305|RAB11FIP3	MULTI-MSMS	HCT116MG_D190212_S2	2	755.3576049804688	1	755.35701	754.349734	1.0639	0.00080362	-0.58567	-0.00044239	0.47822	0.00036123	755.3564224099862	24.765	1.5605	24.386	23.408	24.968	-0.37862					36	29	2	0	0	0	0.50777	1	8984	8984		40.449	4.4044	1	9233000			12086	1544	7055	7097	11634	11634					-0.03726714361766881
GLDGPKGNPG	10	Unmodified	_GLDGPKGNPG_					0	0	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	MSMS	HCT116MG_D190212_S4	4	456.2331848144531	2	456.232699	910.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.116	1	20.906	20.406	21.406	-0.20959								0	0	0	0.82636	1	7270	7270		25.399	2.2509	1				12087	2806	7056	7098	11635	11635					-0.007962626590369837
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	560.803955078125	2	560.803488	1119.59242	0.2532	0.000142	0.55661	0.00031215	0.80981	0.00045415	560.8037766097937	50.085	0.30905	50.085	49.905	50.214	0					20	5	5	0	0	0	0.00081686	2	19086	19086;19119		179.17	103.41	1	327240000			12088	4764	7057	7099	11636;11637	11636					0.03741110643431966
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	560.803466796875	2	560.803488	1119.59242	0.35332	0.00019814	0.049918	2.7994E-05	0.40324	0.00022614	560.8034656183048	50.269	0.46955	50.097	49.934	50.403	-0.1719					22	8	4	0	0	0	0.00081686	1	19251	19251		179.17	103.41	1	509820000			12089	4764	7057	7099	11638	11638					0.03741110643431966
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	1120.599853515625	1	1120.5997	1119.59242	0.49397	0.00055355	-0.17747	-0.00019887	0.3165	0.00035467	1120.5994168087852	50.234	0.25745	50.062	49.934	50.191	-0.1719					7	4	2	0	0	0	1.9134E-06	1	19273	19273		203.64	110.99	1	40981000			12090	4764	7057	7099	11639	11639					0.03741110643431966
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1120.5997	1119.59242	0.45322	0.00050788	0.16104	0.00018046	0.61426	0.00068834	1120.5999674517434	50.103	0.20555	50.103	49.957	50.162	0	0.020578	0.00017329	NaN	203.64	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10541000			12091	4764	7057	7099							0.03741110643431966
GLDIPTVQV	9	Unmodified	_GLDIPTVQV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	HCT116MG_D190212_S2	2	941.53076171875	1	941.530224	940.522947	0.50346	0.00047402	0.27718	0.00026097	0.78064	0.00073499	941.5303515757042	53.233	0.41407	53.044	52.809	53.223	-0.18922					16	7	3	0	0	0	0.010834	1	20448	20448		111.29	7.5388	1	99656000			12092	2025	7058	7100	11640	11640					0.0503065169467618
GLDIPTVQV	9	Unmodified	_GLDIPTVQV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	HCT116MG_D190212_S2	2	471.26910400390625	2	471.26875	940.522947	0.086164	4.0606E-05	-0.10534	-4.9644E-05	-0.019177	-9.0373E-06	471.2685996907124	53.222	0.25954	53.033	52.861	53.121	-0.18922					7	4	2	0	0	0	0.016701	1	20480	20480		99.799	28.665	1	14644000			12093	2025	7058	7100	11641	11641					0.0503065169467618
GLDIPTVQV	9	Unmodified	_GLDIPTVQV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	941.530224	940.522947	1.0007	0.00094222	-0.26962	-0.00025385	0.73111	0.00068837	941.5299475411244	52.992	0.30785	52.992	52.794	53.102	0	-0.026054	-0.00029888	NaN	111.29	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41495000			12094	2025	7058	7100							0.0503065169467618
GLDKNSQLSP	10	Unmodified	_GLDKNSQLSP_					0	0	0			REV__ENSG00000198597|ENST00000355537|ZNF536	REV__ENSG00000198597|ENST00000355537|ZNF536	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2770385742188	2	529.77747	1057.54039	0.42831	0.00022691	-0.27356	-0.00014493	0.15474	8.198E-05	529.7772586374698	30.439	1.2327	30.189	29.279	30.511	-0.24946					96	36	3	0	0	0	0.72678	1	10795	10795		18.146	3.3081	1	108700000	+		12095	14135	7059	7101	11642	11642					0.01391947229649304
GLDKQIKEI	9	Unmodified	_GLDKQIKEI_					0	0	0		ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	MSMS	HCT116MG_D190212_S1	1	522.3085327148438	2	522.308406	1042.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.071	1	32.071	31.571	32.571	0								0	0	0	1.1008E-08	1	11822	11822		166.77	62.946	1				12096	1481	7060	7102	11643	11643					0.08266298648823067
GLDKQIKEI	9	Unmodified	_GLDKQIKEI_					0	0	0		ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	522.3084716796875	2	522.308406	1042.60226	0.3026	0.00015805	-0.053559	-2.7974E-05	0.24904	0.00013007	522.3082008953185	32.302	0.36402	32.072	31.89	32.254	-0.23009					13	6	3	0	0	0	0.0034268	1	11952	11952		179.28	75.46	1	32125000			12097	1481	7060	7102	11644	11644					0.08266298648823067
GLDLMYVQPQ	10	Unmodified	_GLDLMYVQPQ_					0	0	0			REV__RNF183|p.T117M|1|0.91|ENSG00000165188|chr9:113297835-113297835|G/A|missense_variant	REV__RNF183|p.T117M|1|0.91|ENSG00000165188|chr9:113297835-113297835|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	582.2940673828125	2	582.291899	1162.56925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.677	1	20.476	19.976	20.976	-0.20133								0	0	0	0.90892	1	7093	7093		13.906	0	1		+		12098	17475	7061	7103	11645	11645					-0.005536514655432256
GLDPGKQIKL	10	Unmodified	_GLDPGKQIKL_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	534.8245239257812	2	534.824224	1067.63389	0.64511	0.00034502	0.33745	0.00018048	0.98255	0.00052549	534.8242020830085	37.337	0.24908	37.337	37.146	37.395	0					6	4	2	0	0	0	0.30623	1	13938	13938		49.933	25.912	1	7383600			12099	1601	7062	7104	11646	11646					0.10278291402732975
GLDPGKQIKL	10	Unmodified	_GLDPGKQIKL_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.8245849609375	2	534.824224	1067.63389	0.32299	0.00017274	0.50667	0.00027098	0.82966	0.00044372	534.8244233369804	37.292	0.36079	37.189	36.923	37.284	-0.10318					10	6	2	0	0	0	0.24395	1	14010	14010		55.503	11.644	1	19113000			12100	1601	7062	7104	11647	11647					0.10278291402732975
GLDQKRRKYVV	11	Unmodified	_GLDQKRRKYVV_					0	0	0		ENST00000461622.1_1_7:65429142-65432870:-|nuORF;nc|ENSG00000169919|P08236-3|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB	ENST00000461622.1_1_7:65429142-65432870:-|nuORF	ENST00000461622.1_1_7:65429142-65432870:-|nuORF	MSMS	HCT116MG_D190212_S4	4	681.401611328125	2	681.404235	1360.79392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.197	1	37.815	37.315	38.315	-0.38283								0	0	0	0.95196	1	13990	13990		5.2969	2.5617	1				12101	5102	7063	7105	11648	11648					0.12795219399777125
GLDRGFAQSLV	11	Unmodified	_GLDRGFAQSLV_					0	0	0			REV__ENSG00000134780|ENST00000257215|DAGLA	REV__ENSG00000134780|ENST00000257215|DAGLA	MULTI-MSMS	HCT116MG_D190212_S1	1	581.8145751953125	2	581.814387	1161.61422	0.80607	0.00046899	-0.012688	-7.3822E-06	0.79339	0.0004616	581.8142898085645	28.727	1.1557	28.727	28.008	29.164	0					44	21	4	0	0	0	0.69138	1	10393	10393		24.991	0	1	25438000	+		12102	12069	7064	7106	11649	11649					0.039879153919855526
GLDRLNVTV	9	Unmodified	_GLDRLNVTV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-SECPEP	HCT116MG_D190212_S2	2	493.3056335449219	2	493.785099	985.555644	0.31579	0.00015593	0.77499	0.00038268	1.0908	0.00053861	493.78517131561796	42.369	0.20724	42.299	42.17	42.377	-0.069984					5	3	2	0	0	0	0.12897	1	16037	16037		57.722	21.595	1	13133000			12103	4289	7065	7107	11650	11650					0.06228858817519267
GLDSEGGKQY	10	Unmodified	_GLDSEGGKQY_					0	0	0			REV__ENST00000510003.5_1_5:121726829-121776497:+|nuORF	REV__ENST00000510003.5_1_5:121726829-121776497:+|nuORF	MSMS	HCT116MG_D190212_S4	4	527.2462768554688	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.064	1	24.784	24.284	25.284	-0.27958								0	0	0	0.90023	1	8863	8863		15.847	1.0089	1		+		12104	10690	7066	7108	11651	11651					-0.046686185583666884
GLDSGKLYTL	10	Unmodified	_GLDSGKLYTL_					0	0	0		ENSG00000089220|ENST00000261313|PEBP1	ENSG00000089220|ENST00000261313|PEBP1	ENSG00000089220|ENST00000261313|PEBP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	534.3031616210938	2	533.792589	1065.57063	0.51709	0.00027602	0.1273	6.7952E-05	0.64439	0.00034397	533.7928290592533	45.261	0.20857	45.169	44.996	45.205	-0.092472					5	3	2	0	0	0	0.23613	1	17161	17161		30.703	9.1665	1	14490000			12105	1522	7067	7109	11652	11652					0.04046305894848956
GLDVQCHKK	9	Unmodified	_GLDVQCHKK_					0	0	0		ENST00000534603.5_1_11:770899-773566:-|nuORF	ENST00000534603.5_1_11:770899-773566:-|nuORF	ENST00000534603.5_1_11:770899-773566:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	513.7304077148438	2	514.271301	1026.52805	0.30563	0.00015718	-0.62938	-0.00032367	-0.32374	-0.00016649	514.270990335724	25.336	0.36424	25.23	25.048	25.412	-0.10618					11	6	3	0	0	0	0.22393	1	9101	9101		19.257	19.257	1	16371000			12106	8653	7068	7110	11653	11653					0.015846322856077677
GLDWLAPNKR	10	Unmodified	_GLDWLAPNKR_					0	0	0			REV__KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	REV__KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	585.3224487304688	2	585.324922	1168.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.649	1	23.649	23.149	24.149	0								0	0	0	0.92607	1	8432	8432		10.074	2.1638	1		+		12107	14095	7069	7111	11654	11654					0.057719254914900375
GLDWTHLVDA	10	Unmodified	_GLDWTHLVDA_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000116991|Q9P2F8-2|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MSMS	HCT116MG_D190212_S4	4	563.7808227539062	2	563.780013	1125.54547	0.24477	0.000138	0.28696	0.00016178	0.53174	0.00029978	563.780102702868	26.719	0.88349	26.418	25.922	26.805	-0.30087					23	16	2	0	0	0	0.65652	1	9445	9445		24.021	0	1	2271600			12108	2551	7070	7112	11655	11655					-0.012277489076950587
GLDWTHLVDA	10	Unmodified	_GLDWTHLVDA_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000116991|Q9P2F8-2|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	563.780013	1125.54547	0.35675	0.00020113	-1.0221	-0.00057624	-0.66535	-0.00037511	564.2805365736845	26.515	0.20762	26.154	26.024	26.232	-0.36164	-0.14776	-0.00095089	NaN	24.021	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3695000			12109	2551	7070	7112							-0.012277489076950587
GLDWTHLVDA	10	Unmodified	_GLDWTHLVDA_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000116991|Q9P2F8-2|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	563.780013	1125.54547	0.51747	0.00029174	-0.26932	-0.00015184	0.24815	0.0001399	564.2813145539384	26.482	0.72912	26.333	25.89	26.619	-0.14924	0.031341	-0.0001021	NaN	24.021	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3306500			12110	2551	7070	7112							-0.012277489076950587
GLEEGLLQ	8	Unmodified	_GLEEGLLQ_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant;RYR1|p.P3303Tfs*8|1|0.36|ENSG00000196218|chr19:38517571-38517572|-/C|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	HCT116MG_D190212_S1	1	858.4585571289062	1	858.456724	857.449448	0.78254	0.00067178	0.6939	0.00059568	1.4764	0.0012675	858.4573578355827	47.123	0.20706	47.123	46.958	47.165	0					5	3	2	0	0	0	0.28659	1	17912	17912		60.39	2.9182	1	6855900			12111	6051	7071	7113	11656	11656					0.015021032521872257
GLEEIQQLL	9	Unmodified	_GLEEIQQLL_					0	0	0			REV__LUC7L3|p.C195Vfs*5|1|0.12|ENSG00000108848|chr17:50744702-50744702|A/-|frameshift_variant	REV__LUC7L3|p.C195Vfs*5|1|0.12|ENSG00000108848|chr17:50744702-50744702|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.27978515625	2	521.792589	1041.57063	0.13457	7.0219E-05	1.1756	0.00061342	1.3102	0.00068364	521.7934584515103	37.74	0.30861	37.637	37.486	37.795	-0.10318					10	5	3	0	0	0	0.26009	1	14127	14127		3.5965	0	1	61040000	+		12112	11357	7072	7114	11657	11657					0.0515030589485832
GLEENHELFSK	11	Unmodified	_GLEENHELFSK_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MSMS	HCT116MG_D190212_S4	4	434.8825988769531	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.671	1	12.502	12.002	13.002	-0.16903								0	0	0	0.95954	1	3944	3944		0.45452	0	1				12113	9498	7073	7115	11658	11658					-0.01356727024403881
GLEGPVQLWWA	11	Unmodified	_GLEGPVQLWWA_					0	0	0			REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant	REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	628.3295288085938	2	628.327131	1254.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.794	1	33.504	33.004	34.004	-0.29013								0	0	0	0.93717	1	12416	12416		13.042	2.243	1		+		12114	17532	7074	7116	11659	11659					0.02257389914416308
GLEGPVQLWWA	11	Unmodified	_GLEGPVQLWWA_					0	0	0			REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant	REV__SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	628.330322265625	2	628.327131	1254.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.9	1	33.516	33.016	34.016	-0.38426								0	0	0	0.9387	1	12357	12357		12.241	2.6967	1		+		12115	17532	7074	7116	11660	11660					0.02257389914416308
GLEHSAHVLE	10	Unmodified	_GLEHSAHVLE_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF;PARP1|p.T799Lfs*41|1|0.39|ENSG00000143799|chr1:226367491-226367491|T/-|frameshift_variant	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MSMS	HCT116MG_D190212_S1	1	546.2777099609375	2	546.277638	1090.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.24	1	25.24	24.74	25.74	0								0	0	0	0.88261	1	9070	9070		18.146	2.2992	1				12116	3835	7075	7117	11661	11661					-0.0009263305048534676
GLEKLYQEP	9	Unmodified	_GLEKLYQEP_					0	0	0		DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD	DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant	DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	359.0283508300781	3	359.525602	1075.55498	-0.062491	-2.2467E-05	-0.2838	-0.00010203	-0.34629	-0.0001245	359.52539788266444	34.004	0.41653	33.71	33.611	34.027	-0.2942					11	7	2	0	0	0	0.26696	1	12475	12475		1.0715	0.29493	1	1969700			12117	690	7076	7118	11662	11662					0.02022019377795914
GLEKLYQEP	9	Unmodified	_GLEKLYQEP_					0	0	0		DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD	DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant	DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	359.525602	1075.55498	-0.13529	-4.8639E-05	-0.58258	-0.00020945	-0.71786	-0.00025809	359.5254889263687	33.914	0.62334	33.739	33.5	34.124	-0.17512	0.014464	-0.00018068	NaN	1.0715	17	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15697000			12118	690	7076	7118							0.02022019377795914
GLEQGVLAS	9	Unmodified	_GLEQGVLAS_					0	0	0			REV__tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	REV__tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	873.4683227539062	1	873.467623	872.460347	0.85914	0.00075043	0.0070837	6.1874E-06	0.86623	0.00075662	873.4672285880954	41.168	0.26126	40.866	40.736	40.997	-0.30185					7	4	2	0	0	0	0.049545	1	15315	15315		74.929	6.8483	1	7622200	+		12119	17701	7077	7119	11663	11663					0.019015056264606756
GLEQGVLAS	9	Unmodified	_GLEQGVLAS_					0	0	0			REV__tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	REV__tr|U7SKQ1|U7SKQ1_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02104PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	873.467623	872.460347	0.85914	0.00075043	0.0070837	6.1874E-06	0.86623	0.00075662	873.4672285880954	41.168	0.26126	40.866	40.736	40.997	-0.30185	-0.01559	-8.8036E-05	NaN	74.929	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7622200	+		12120	17701	7077	7119							0.019015056264606756
GLEREGPGP	9	Unmodified	_GLEREGPGP_					0	0	0			REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	MULTI-SECPEP	HCT116MG_D190212_S3	3	456.7005310058594	2	456.232699	910.450845	0.2124	9.6905E-05	0.43193	0.00019706	0.64433	0.00029396	456.2327613583137	20.237	0.46865	20.285	19.895	20.363	0.048107					10	8	2	0	0	0	0.19551	1	7011	7011		34.102	23.279	1	1464400	+		12121	11381	7078	7120	11664	11664					-0.007962626590369837
GLEREGPGPQ	10	Unmodified	_GLEREGPGPQ_					0	0	0			REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	MSMS	HCT116MG_D190212_S4	4	520.2620239257812	2	520.261988	1038.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.663	1	19.47	18.97	19.97	-0.19367								0	0	0	0.89062	1	6683	6683		17.113	1.8644	1		+		12122	11381	7079	7121	11665	11665					-0.008292060845633387
GLERTFRFFFQ	11	Unmodified	_GLERTFRFFFQ_					0	0	0		ENST00000539663.5_1_12:21661040-21668177:+|nuORF;ENSG00000111711|ENST00000229314|GOLT1B	ENST00000539663.5_1_12:21661040-21668177:+|nuORF	ENST00000539663.5_1_12:21661040-21668177:+|nuORF	MSMS	HCT116MG_D190212_S2	2	724.3804321289062	2	724.377686	1446.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.98	1	36.865	36.365	37.365	-0.11478								0	0	0	0.95017	1	13846	13846		7.609	2.3121	1				12123	2312	7080	7122	11666	11666					0.035318416171094213
GLESPLFQL	9	Unmodified	_GLESPLFQL_					0	0	0			REV__RSPH6A|p.A632Pfs*47|1|0.3|ENSG00000104941|chr19:45800468-45800468|C/-|frameshift_variant	REV__RSPH6A|p.A632Pfs*47|1|0.3|ENSG00000104941|chr19:45800468-45800468|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1003.5457763671875	1	1003.54587	1002.5386	0.70882	0.00071133	0.10537	0.00010574	0.81419	0.00081707	1003.5457549401791	57.282	0.15596	57.282	57.204	57.36	0					4	2	2	0	0	0	0.050578	1	22068	22068		74.423	7.0789	1	10904000	+		12124	11229	7081	7123	11667	11667					0.03742938211712499
GLESPLFQL	9	Unmodified	_GLESPLFQL_					0	0	0			REV__RSPH6A|p.A632Pfs*47|1|0.3|ENSG00000104941|chr19:45800468-45800468|C/-|frameshift_variant	REV__RSPH6A|p.A632Pfs*47|1|0.3|ENSG00000104941|chr19:45800468-45800468|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1003.5465698242188	1	1003.54587	1002.5386	0.62394	0.00062615	-0.7364	-0.00073902	-0.11247	-0.00011287	1003.5459995002577	57.516	0.15533	57.341	57.263	57.418	-0.17494					4	2	2	0	0	0	0.057285	1	22236	22236		71.134	6.8973	1	31432000	+		12125	11229	7081	7123	11668	11668					0.03742938211712499
GLETQQGVAW	10	Unmodified	_GLETQQGVAW_					0	0	0		nc|ENSG00000292373|Q01113-2|IL9R;ENSG00000124334|ENST00000244174|IL9R;ENST00000442856.1_1_16:79338-84879:-|nuORF	nc|ENSG00000292373|Q01113-2|IL9R	nc|ENSG00000292373|Q01113-2|IL9R	MULTI-SECPEP	HCT116MG_D190212_S3	3	545.2642822265625	2	544.772188	1087.52982	0.34385	0.00018732	0.039628	2.1588E-05	0.38348	0.00020891	544.7721822841363	28.162	0.52132	27.956	27.603	28.125	-0.20593					13	9	2	0	0	0	0.29442	1	10181	10181		6.2058	0.47393	1	3932100			12126	2843	7082	7124	11669	11669					-0.010440354247748473
GLETSLRRLY	10	Unmodified	_GLETSLRRLY_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MSMS	HCT116MG_D190212_S4	4	403.2326965332031	3	403.2313	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1343	1	7.9029	7.4029	8.4029	-0.23148								0	0	0	0.97045	1	2484	2484		0.15932	0	1				12127	3484	7083	7125	11670	11670					0.07700177317428825
GLETYLQAVI	10	Unmodified	_GLETYLQAVI_					0	0	0		ENSG00000064652|ENST00000261369|SNX24;ENST00000510914.5_1_5:122281815-122358033:+|nuORF;nc|ENSG00000064652|Q9Y343-2|SNX24	ENSG00000064652|ENST00000261369|SNX24	ENSG00000064652|ENST00000261369|SNX24	MULTI-SECPEP	HCT116MG_D190212_S2	2	553.271484375	2	553.808239	1105.60193	0.31116	0.00017232	-0.53015	-0.0002936	-0.21899	-0.00012128	553.8079522780893	51.014	0.20738	50.836	50.706	50.914	-0.17868					6	3	2	0	0	0	0.24623	1	19546	19546		22.736	0	1	10609000			12128	1140	7084	7126	11671	11671					0.05334878928965736
GLFDQHFRL	9	Unmodified	_GLFDQHFRL_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENST00000467594.1_1_3:52524105-52525540:+|nuORF	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-MSMS	HCT116MG_D190212_S2	2	566.7990112304688	2	566.79854	1131.58253	0.3041	0.00017236	0.45351	0.00025705	0.75761	0.00042941	566.7986535352397	53.644	0.25817	53.454	53.274	53.532	-0.1894					6	4	2	0	0	0	0.17622	1	20650	20650		43.772	24.515	1	19401000			12129	880	7085	7127	11672	11672					0.021999674287144444
GLFGDNDDWD	10	Unmodified	_GLFGDNDDWD_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MSMS	HCT116MG_D190212_S3	3	385.1531982421875	3	385.152604	1152.43598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.991	1	12.046	11.546	12.546	0.055045								0	0	0	0.96911	1	3709	3709		0.15932	0	1				12130	6606	7086	7128	11673	11673					-0.13413799317709163
GLFGDNDDWD	10	Unmodified	_GLFGDNDDWD_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MSMS	HCT116MG_D190212_S3	3	385.15313720703125	3	385.152604	1152.43598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.754	1	13.829	13.329	14.329	0.074899								0	0	0	0.96911	1	4382	4382		0.15932	0	1				12131	6606	7086	7128	11674	11674					-0.13413799317709163
GLFKALGW	8	Unmodified	_GLFKALGW_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33271836-33272001:-|nuORF	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MSMS	HCT116MG_D190212_S3	3	446.2599182128906	2	446.257988	890.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.183	1	30.923	30.423	31.423	-0.26071								0	0	0	0.8837	1	11383	11383		2.5775	0	1				12132	6507	7087	7129	11675	11675					0.05179311456618052
GLFKALGW	8	Unmodified	_GLFKALGW_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33271836-33272001:-|nuORF	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MSMS	HCT116MG_D190212_S4	4	446.25946044921875	2	446.257988	890.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.761	1	24.492	23.992	24.992	-0.26881								0	0	0	0.8837	1	8741	8741		0.79363	0	1				12133	6507	7087	7129	11676	11676					0.05179311456618052
GLFKALGW	8	Unmodified	_GLFKALGW_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33271836-33272001:-|nuORF	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MSMS	HCT116MG_D190212_S4	4	446.2596740722656	2	446.257988	890.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.888	1	38.506	38.006	39.006	-0.38163								0	0	0	0.8837	1	14269	14269		0.79363	0	1				12134	6507	7087	7129	11677	11677					0.05179311456618052
GLGADPRGLAP	11	Unmodified	_GLGADPRGLAP_					0	0	0			REV__ENST00000262948.9_1_19:4123949-4124123:-|nuORF	REV__ENST00000262948.9_1_19:4123949-4124123:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	512.78466796875	2	512.282723	1022.55089	0.32082	0.00016435	-0.34612	-0.00017731	-0.025302	-1.2962E-05	512.2823842870422	25.653	0.67639	25.363	24.943	25.62	-0.29023					23	12	2	0	0	0	0.50491	1	9038	9038		45.7	5.7499	1	5193000	+		12135	14643	7088	7130	11678	11678					0.040519746747463614
GLGADPRGLAP	11	Unmodified	_GLGADPRGLAP_					0	0	0			REV__ENST00000262948.9_1_19:4123949-4124123:-|nuORF	REV__ENST00000262948.9_1_19:4123949-4124123:-|nuORF	MSMS	HCT116MG_D190212_S4	4	512.2831420898438	2	512.282723	1022.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.329	1	26.028	25.528	26.528	-0.30087								0	0	0	0.81249	1	9374	9374		31.268	5.869	1		+		12136	14643	7088	7130	11679	11679					0.040519746747463614
GLGAERGAPVP	11	Unmodified	_GLGAERGAPVP_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2820434570312	2	512.282723	1022.55089	0.28462	0.00014581	-0.17865	-9.1517E-05	0.10598	5.429E-05	512.28229822094	25.422	0.83324	25.316	24.891	25.724	-0.10618					29	15	3	0	0	0	0.62391	1	9031	9031		32.786	7.7947	1	5196000			12137	2704	7089	7131	11680	11680					0.0405197467475773
GLGAGVSP	8	Unmodified	_GLGAGVSP_					0	0	0			REV__ENST00000436151.5_1_7:157647400-157647559:+|nuORF	REV__ENST00000436151.5_1_7:157647400-157647559:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	657.3570556640625	1	657.356616	656.34934	0.49844	0.00032766	0.28667	0.00018845	0.78511	0.0005161	657.3566891265986	32.314	0.67472	31.935	31.586	32.26	-0.37924					17	12	2	0	0	0	0.70465	1	11745	11745		22.453	6.6844	1	5551200	+		12138	15622	7090	7132	11681	11681					0.00741910709041349
GLGAGVSP	8	Unmodified	_GLGAGVSP_					0	0	0			REV__ENST00000436151.5_1_7:157647400-157647559:+|nuORF	REV__ENST00000436151.5_1_7:157647400-157647559:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	657.356616	656.34934	0.49844	0.00032766	0.28667	0.00018845	0.78511	0.0005161	657.3566891265986	32.314	0.67472	31.935	31.586	32.26	-0.37924	-0.0094518	6.4356E-05	NaN	22.453	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5551200	+		12139	15622	7090	7132							0.00741910709041349
GLGAPGRP	8	Unmodified	_GLGAPGRP_					0	0	0			REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	362.708740234375	2	362.708663	723.402772	-0.060919	-2.2096E-05	0.24573	8.9129E-05	0.18481	6.7033E-05	362.7086508354137	18.19	0.36504	18.19	17.985	18.35	0					12	6	3	0	0	0	0.21411	1	6244	6244		70.865	3.8292	1	3215000	+		12140	10449	7091	7133	11682	11682					0.030007082115616868
GLGAPGRP	8	Unmodified	_GLGAPGRP_					0	0	0			REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	362.7085266113281	2	362.708663	723.402772	-0.31485	-0.0001142	0.3479	0.00012619	0.033053	1.1988E-05	362.7086790921532	17.843	0.93714	17.924	17.638	18.575	0.081358					30	17	3	0	0	0	0.21411	1	5972	5972		70.865	3.8292	1	18991000	+		12141	10449	7091	7133	11683	11683					0.030007082115616868
GLGAPGRP	8	Unmodified	_GLGAPGRP_					0	0	0			REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	362.708663	723.402772	-0.060919	-2.2096E-05	0.24573	8.9129E-05	0.18481	6.7033E-05	362.7086508354137	18.19	0.36504	18.19	17.985	18.35	0	0.10748	-6.9072E-05	NaN	70.865	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3215000	+		12142	10449	7091	7133							0.030007082115616868
GLGAPGRP	8	Unmodified	_GLGAPGRP_					0	0	0			REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	362.708663	723.402772	-0.31485	-0.0001142	0.3479	0.00012619	0.033053	1.1988E-05	362.7086790921532	17.843	0.93714	17.924	17.638	18.575	0.081358	-0.15862	5.0469E-06	NaN	70.865	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18991000	+		12143	10449	7091	7133							0.030007082115616868
GLGAVALGV	9	Unmodified	_GLGAVALGV_					0	0	0		ENST00000506267.1_2_4:174255326-174255392:-|nuORF	ENST00000506267.1_2_4:174255326-174255392:-|nuORF	ENST00000506267.1_2_4:174255326-174255392:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	756.46240234375	1	756.461416	755.454139	0.81778	0.00061862	-0.051437	-3.891E-05	0.76635	0.00057971	756.461399082139	52.254	0.20682	52.254	52.125	52.331	0					5	3	2	0	0	0	0.1628	1	20010	20010		45.75	0	1	12241000			12144	8461	7092	7134	11684	11684					0.06663032185610973
GLGAVALGV	9	Unmodified	_GLGAVALGV_					0	0	0		ENST00000506267.1_2_4:174255326-174255392:-|nuORF	ENST00000506267.1_2_4:174255326-174255392:-|nuORF	ENST00000506267.1_2_4:174255326-174255392:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	756.4615478515625	1	756.461416	755.454139	1.1398	0.00086225	-0.27462	-0.00020774	0.86523	0.00065451	756.4610805450427	52.422	0.30893	52.235	52.09	52.399	-0.18726					11	5	3	0	0	0	0.11088	1	20153	20153		56.048	0	1	36409000			12145	8461	7092	7134	11685	11685					0.06663032185610973
GLGDVPVSQ	9	Unmodified	_GLGDVPVSQ_					0	0	0		AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	871.45263671875	1	871.451973	870.444697	0.99545	0.00086749	-0.27994	-0.00024395	0.71551	0.00062353	871.4516278771767	33.757	0.55113	33.373	33.018	33.569	-0.38426					17	11	2	0	0	0	0.19218	1	12218	12218		42.095	3.9434	1	4465700			12146	83	7093	7135	11686	11686					0.004292191094350528
GLGDVPVSQ	9	Unmodified	_GLGDVPVSQ_					0	0	0		AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2;AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	871.451973	870.444697	0.83819	0.00073044	-0.33536	-0.00029225	0.50283	0.00043819	871.4519138632584	33.672	0.60351	33.382	33.011	33.615	-0.29013	0.004402	-2.4828E-05	NaN	42.095	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4705100			12147	83	7093	7135							0.004292191094350528
GLGEVATPNKD	11	Unmodified	_GLGEVATPNKD_					0	0	0			REV__NRCAM|p.I903Dfs*20|1|0.06|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	REV__NRCAM|p.I903Dfs*20|1|0.06|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	550.7830810546875	2	550.782753	1099.55095	0.53621	0.00029534	-0.42704	-0.00023521	0.10917	6.0127E-05	550.7824838312142	23.718	0.46805	23.47	23.272	23.74	-0.24775					11	8	2	0	0	0	0.70662	1	8328	8328		19.362	2.249	1	2071600	+		12148	10994	7094	7136	11687	11687					0.005159298840908377
GLGGAGCA	8	Unmodified	_GLGGAGCA_					0	0	0			REV__ENSG00000187189|ENST00000420283|TSPYL4	REV__ENSG00000187189|ENST00000420283|TSPYL4	MULTI-MSMS	HCT116MG_D190212_S2	2	605.2718505859375	1	605.271172	604.263896	0.76496	0.00046301	0.89306	0.00054055	1.658	0.0010036	605.2714175265658	58.579	0.30749	58.408	58.296	58.604	-0.1703					6	5	2	0	0	0	0.86388	1	22663	22663		2.8892	0	1	17696000	+		12149	13916	7095	7137	11688	11688					-0.05406577748260588
GLGGGHVK	8	Unmodified	_GLGGGHVK_					0	0	0			REV__ENST00000253122.9_1_X:152961586-152961730:+|nuORF	REV__ENST00000253122.9_1_X:152961586-152961730:+|nuORF	MSMS	HCT116MG_D190212_S2	2	362.70849609375	2	362.708663	723.402772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.972	1	20.59	20.09	21.09	-0.38288								0	0	0	0.68119	1	7356	7356		32.117	3.9437	1		+		12150	14592	7096	7138	11689	11689					0.030007082115730555
GLGGHGQPR	9	Unmodified	_GLGGHGQPR_					0	0	0		ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	MULTI-MSMS	HCT116MG_D190212_S4	4	439.7330322265625	2	439.7332	877.451848	-0.12167	-5.3501E-05	0.36364	0.0001599	0.24197	0.0001064	439.7333330941663	17.317	0.41327	17.147	16.915	17.329	-0.17047					11	7	2	0	0	0	0.2682	1	5720	5720		34.102	3.8776	1	2837400			12151	1223	7097	7139	11690	11690					0.008219965005196173
GLGHEQTPLPA	11	Unmodified	_GLGHEQTPLPA_					0	0	0		nc|ENSG00000171533|Q96JE9-2|MAP6;ENSG00000171533|ENST00000304771|MAP6	nc|ENSG00000171533|Q96JE9-2|MAP6	nc|ENSG00000171533|Q96JE9-2|MAP6	MULTI-MSMS	HCT116MG_D190212_S2	2	560.7945556640625	2	560.293288	1118.57202	-0.088392	-4.9526E-05	0.91248	0.00051126	0.82409	0.00046173	560.2938944529557	43.248	0.4646	43.174	43.045	43.51	-0.073376					12	8	2	0	0	0	0.70377	1	16408	16408		20.415	1.0526	1	56221000			12152	5203	7098	7140	11691	11691					0.017479399836247467
GLGKARHD	8	Unmodified	_GLGKARHD_					0	0	0			REV__GRIK5|p.E791K|1|0.16|ENSG00000105737|chr19:42003576-42003576|C/T|missense_variant	REV__GRIK5|p.E791K|1|0.16|ENSG00000105737|chr19:42003576-42003576|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	427.2356872558594	2	427.235576	852.456599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.907	1	56.628	56.128	57.128	-0.27913								0	0	0	0.8837	1	21614	21614		2.0598	1.2661	1		+		12153	11272	7099	7141	11692	11692					0.024468806432764723
GLGKRRRRRRK	11	Unmodified	_GLGKRRRRRRK_					0	0	0			REV__nc|ENSG00000135272|Q9P1T7-1|MDFIC	REV__nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	719.97265625	2	719.974351	1437.93415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.594	1	23.594	23.094	24.094	0								0	0	0	0.95925	1	8410	8410		1.4819	0.28856	1		+		12154	17135	7100	7142	11693	11693					0.23269860967366185
GLGLKKKQ	8	Unmodified	_GLGLKKKQ_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MSMS	HCT116MG_D190212_S1	1	436.30487060546875	2	436.28982	870.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.146	1	60.146	59.646	60.646	0								0	0	0	0.8837	1	23179	23179		0.79363	0.10326	1		+		12155	12175	7101	7143	11694	11694					0.12462671893706556
GLGNGNGL	8	Unmodified	_GLGNGNGL_					0	0	0		ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	MSMS	HCT116MG_D190212_S1	1	351.1822509765625	2	351.182478	700.350402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.312	1	18.312	17.812	18.812	0								0	0	0	0.8837	1	6287	6287		5.7604	0.52976	1				12156	6632	7102	7144	11695	11695					-0.011758749220348363
GLGPKAPF	8	Unmodified	_GLGPKAPF_					0	0	0			REV__LAGE3|p.V141Ffs*20|1|0.9|ENSG00000196976|chrX:154477956-154477956|G/-|frameshift_variant	REV__LAGE3|p.V141Ffs*20|1|0.9|ENSG00000196976|chrX:154477956-154477956|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	394.1829528808594	2	393.729064	785.443575	0.0010607	4.1763E-07	0.24596	9.6843E-05	0.24702	9.7261E-05	393.72903461031575	42.939	0.35913	42.869	42.689	43.049	-0.069984					13	6	3	0	0	0	0.32196	1	16289	16289		6.3541	5.5605	1	273630000	+		12157	16966	7103	7145	11696	11696					0.04227049531186822
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	420.240478515625	2	420.240327	838.466101	-0.0013759	-5.782E-07	0.069479	2.9198E-05	0.068103	2.862E-05	420.2402760332346	27.774	0.4148	27.774	27.49	27.904	0					13	7	2	0	0	0	0.041798	1	10082	10082		78.728	3.799	1	11101000			12158	5538	7104	7146	11697	11697					0.040406489287988734
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	420.2404479980469	2	420.240327	838.466101	0.057569	2.4193E-05	0.03172	1.333E-05	0.08929	3.7523E-05	420.24027790944905	28.226	0.46645	27.896	27.563	28.029	-0.32987					18	8	3	0	0	0	0.0094709	1	10256	10256		114.65	18.364	1	48583000			12159	5538	7104	7146	11698	11698					0.040406489287988734
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	420.2403259277344	2	420.240327	838.466101	-0.012039	-5.0593E-06	0.078023	3.2789E-05	0.065984	2.7729E-05	420.24031317434356	28.112	0.4691	27.918	27.615	28.084	-0.19393					12	8	2	0	0	0	0.030723	1	10158	10158		85.642	7.4921	1	7614000			12160	5538	7104	7146	11699	11699					0.040406489287988734
GLGTVLPAQ	9	Unmodified	_GLGTVLPAQ_					0	0	0			REV__ENST00000463007.5_1_2:240011659-240219867:-|nuORF	REV__ENST00000463007.5_1_2:240011659-240219867:-|nuORF	MSMS	HCT116MG_D190212_S4	4	428.2491455078125	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.517	1	32.138	31.638	32.638	-0.37924								0	0	0	0.76575	1	11846	11846		15.847	1.0089	1		+		12161	15801	7105	7147	11700	11700					0.05310399868744753
GLGVAGLAAV	10	Unmodified	_GLGVAGLAAV_					0	0	0			REV__ENST00000005340.9_1_17:7137535-7137610:-|nuORF	REV__ENST00000005340.9_1_17:7137535-7137610:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	827.4998168945312	1	827.498529	826.491253	1.1659	0.00096474	0.6137	0.00050783	1.7795	0.0014726	827.4986742870146	47.726	0.36186	47.593	47.377	47.738	-0.13281					11	6	2	0	0	0	0.30919	1	18202	18202		49.669	0	1	41236000	+		12162	14484	7106	7148	11701	11701					0.07106703731369635
GLGVAGLAAV	10	Unmodified	_GLGVAGLAAV_					0	0	0			REV__ENST00000005340.9_1_17:7137535-7137610:-|nuORF	REV__ENST00000005340.9_1_17:7137535-7137610:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	827.498529	826.491253	1.1659	0.00096474	0.6137	0.00050783	1.7795	0.0014726	827.4986742870146	47.726	0.36186	47.593	47.377	47.738	-0.13281	8.4519E-05	0.00044786	NaN	49.669	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41236000	+		12163	14484	7106	7148							0.07106703731369635
GLGVAGLAAV	10	Unmodified	_GLGVAGLAAV_					0	0	0			REV__ENST00000005340.9_1_17:7137535-7137610:-|nuORF	REV__ENST00000005340.9_1_17:7137535-7137610:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	827.498529	826.491253	0.66539	0.00055061	-0.39005	-0.00032277	0.27533	0.00022784	827.4985907255178	47.909	0.31261	47.593	47.462	47.775	-0.31596	-8.4519E-05	-0.00038274	NaN	49.669	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8222700	+		12164	14484	7106	7148							0.07106703731369635
GLGVAPQIRK	10	Unmodified	_GLGVAPQIRK_					0	0	0		ENST00000610085.1_1_7:148395177-148395648:-|nuORF	ENST00000610085.1_1_7:148395177-148395648:-|nuORF	ENST00000610085.1_1_7:148395177-148395648:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1038.642333984375	1	1038.64184	1037.63456	0.74247	0.00077116	-0.31623	-0.00032845	0.42624	0.00044271	1038.6415040129982	60.693	0.30676	60.693	60.543	60.85	0					12	5	3	0	0	0	0.87801	1	23400	23400		3.9444	2.1002	1	67535000			12165	9135	7107	7149	11702	11702					0.11725130842478393
GLGVFMIRAK	10	Unmodified	_GLGVFMIRAK_					0	0	0		tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1	tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1	tr|U7SNJ8|U7SNJ8_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02016PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	546.3223876953125	2	546.323337	1090.63212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.746	1	21.746	21.246	22.246	0								0	0	0	0.92272	1	7665	7665		10.824	2.2306	1				12166	18366	7108	7150	11703	11703					0.09042959113139659
GLHGWAFTL	9	Unmodified	_GLHGWAFTL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	501.263916015625	2	501.263802	1000.51305	0.51814	0.00025972	-0.064708	-3.2436E-05	0.45343	0.00022729	501.2636314229303	56.68	0.16022	56.498	56.418	56.578	-0.18261					6	2	3	0	0	0	0.14304	1	21896	21896		49.669	3.9189	1	41162000			12167	4945	7109	7151	11704	11704					0.012815084799399301
GLHNVVYGI	9	Unmodified	_GLHNVVYGI_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MULTI-MSMS	HCT116MG_D190212_S2	2	486.26934814453125	2	486.269084	970.523616	0.51032	0.00024816	-0.39577	-0.00019245	0.11455	5.5703E-05	486.26901806303476	43.717	0.25694	43.639	43.505	43.762	-0.078373					10	4	3	0	0	0	0.13706	1	16615	16615		50.855	20.63	1	17609000			12168	2873	7110	7152	11705	11705					0.0371749113437545
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S1	1	927.4783935546875	1	927.478188	926.470912	1.0036	0.0009308	1.1777	0.0010923	2.1813	0.0020231	927.4781700075233	46.621	0.20752	46.621	46.543	46.751	0					5	3	2	0	0	0	0.016134	1	17724	17724		100.37	32.291	1	11261000			12169	6591	7111	7153	11706	11706					0.004734882809088958
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S2	2	927.4786376953125	1	927.478188	926.470912	1.478	0.0013708	2.5179	0.0023353	3.9959	0.0037061	927.4775635509818	46.76	0.35973	46.649	46.471	46.831	-0.11121					18	6	4	0	0	0	0.0063744	1	17828	17828		125.62	47.475	1	43446000			12170	6591	7111	7153	11707	11707					0.004734882809088958
GLIDGVVEA	9	Unmodified	_GLIDGVVEA_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.P338Tfs*56|1|0.23|ENSG00000104824|chr19:38840318-38840319|-/G|frameshift_variant;HNRNPL|p.P337Hfs*58|9|0.35|ENSG00000104824|chr19:38840319-38840319|G/-|frameshift_variant	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	HCT116MG_D190212_S3	3	872.684814453125	1	872.472374	871.465098	0.68695	0.00059935	-0.11506	-0.00010039	0.57189	0.00049896	872.4721295047757	47.456	0.35023	47.141	46.957	47.308	-0.31525					12	7	2	0	0	0	0.010304	1	17846	17846		112.59	15.519	1	16948000			12171	1954	7112	7154	11708	11708					0.024223897692309038
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2777099609375	2	530.277106	1058.53966	0.24749	0.00013124	0.63758	0.00033809	0.88506	0.00046933	530.2774320076071	43.342	0.31241	43.342	43.108	43.42	0					9	5	3	0	0	0	0.066823	1	16396	16396		66.457	8.9853	1	19859000			12172	5492	7113	7155	11709	11709					0.012731525806202626
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2772216796875	2	530.277106	1058.53966	0.096357	5.1096E-05	0.34464	0.00018276	0.441	0.00023385	530.2771218775117	43.344	0.46415	43.271	43.097	43.561	-0.073372					14	8	3	0	0	0	0.066823	1	16456	16456		66.457	8.9853	1	56668000			12173	5492	7113	7155	11710	11710					0.012731525806202626
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	HCT116MG_D190212_S1	1	506.8419189453125	2	506.841885	1011.66922	0.48616	0.00024641	0.14283	7.2393E-05	0.62899	0.0003188	506.8418050949619	52.994	0.25622	52.994	52.845	53.102	0					10	4	3	0	0	0	0.032914	1	20300	20300		83.429	14.091	1	35607000			12174	1986	7114	7156	11711	11711					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	HCT116MG_D190212_S2	2	506.8424072265625	2	506.841885	1011.66922	0.25932	0.00013143	0.23435	0.00011878	0.49367	0.00025021	506.8419133219496	53.233	0.36203	53.044	52.861	53.223	-0.18922					16	6	4	0	0	0	0.003706	1	20465	20465		155.03	55.227	1	175380000			12175	1986	7114	7156	11712	11712					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	HCT116MG_D190212_S3	3	506.841796875	2	506.841885	1011.66922	0.40996	0.00020778	-0.16116	-8.1682E-05	0.2488	0.0001261	506.84165655452637	53.469	0.31342	53.166	53.035	53.348	-0.30305					9	5	3	0	0	0	0.040027	1	20243	20243		79.596	24.362	1	4470000			12176	1986	7114	7156	11713	11713					0.16384953930571555
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	514.802978515625	2	514.802957	1027.59136	0.49112	0.00025283	0.05227	2.6909E-05	0.54339	0.00027974	514.8028923973687	45.844	0.36681	45.844	45.66	46.027	0					15	6	3	0	0	0	0.0035183	1	17380	17380		157.8	28.863	1	192630000			12177	3106	7115	7157	11714	11714					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	1028.60009765625	1	1028.59864	1027.59136	0.95556	0.00098289	0.14768	0.0001519	1.1032	0.0011348	1028.599240805188	45.844	0.20982	45.844	45.713	45.922	0					6	3	2	0	0	0	0.0042464	1	17407	17407		147.06	18.127	1	14567000			12178	3106	7115	7157	11715	11715					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	514.802978515625	2	514.802957	1027.59136	0.2135	0.00010991	-0.17136	-8.8214E-05	0.042145	2.1696E-05	514.8027973018751	45.837	0.51315	45.736	45.607	46.12	-0.1014					27	9	4	0	0	0	0.0035381	1	17443	17443		171.09	44.52	1	768590000			12179	3106	7115	7157	11716	11716					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	1028.5977783203125	1	1028.59864	1027.59136	0.42913	0.0004414	-0.47246	-0.00048598	-0.043339	-4.4578E-05	1028.5979648497828	45.837	0.3079	45.736	45.607	45.915	-0.1014					11	5	3	0	0	0	0.0034365	1	17464	17464		160.52	19.883	1	66293000			12180	3106	7115	7157	11717	11717					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MSMS	HCT116MG_D190212_S3	3	514.8034057617188	2	514.802957	1027.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.162	1	45.849	45.349	46.349	-0.31237								0	0	0	7.5594E-08	1	17303	17303		155.03	31.575	1				12181	3106	7115	7157	11718	11718					0.0786689627452688
GLIKKKRKRKK	11	Unmodified	_GLIKKKRKRKK_					0	0	0			REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF	REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF	MSMS	HCT116MG_D190212_S3	3	691.9942626953125	2	691.993355	1381.97216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.554	1	28.348	27.848	28.848	-0.20593								0	0	0	0.95925	1	10338	10338		1.4819	1.4819	1		+		12182	15465	7116	7158	11719	11719					0.29644934109478527
GLILKKIKL	9	Unmodified	_GLILKKIKL_					0	0	0		ENST00000576948.5_1_12:9787271-9806302:+|nuORF	ENST00000576948.5_1_12:9787271-9806302:+|nuORF	ENST00000576948.5_1_12:9787271-9806302:+|nuORF	MSMS	HCT116MG_D190212_S1	1	513.30859375	2	513.375895	1024.73724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.874	1	20.874	20.374	21.374	0								0	0	0	0.77008	1	7319	7319		0.6015	0	1				12183	8928	7117	7159	11720	11720					0.2258582358122112
GLILVKRPPPL	11	Unmodified	_GLILVKRPPPL_					0	0	0			REV__CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant	REV__CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	601.9028930664062	2	601.902808	1201.79106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.538	1	40.237	39.737	40.737	-0.30161								0	0	0	0.95925	1	15053	15053		1.4819	0.15237	1		+		12184	10082	7118	7160	11721	11721					0.19823996012928546
GLKARRRELV	10	Unmodified	_GLKARRRELV_					0	0	0			REV__nc|ENSG00000146112|Q6NYC8-3|PPP1R18	REV__nc|ENSG00000146112|Q6NYC8-3|PPP1R18	MULTI-MSMS	HCT116MG_D190212_S1	1	599.38037109375	2	599.380563	1196.74657	0.63346	0.00037968	-0.5575	-0.00033416	0.075955	4.5526E-05	599.3801546880093	54.409	0.45798	54.409	54.179	54.637	0					23	8	5	0	0	0	0.8392	1	20837	20837		8.7454	0	1	1464999999.9999998	+		12185	17157	7119	7161	11722	11722					0.15606984919440947
GLKDKIHHV	9	Unmodified	_GLKDKIHHV_					0	0	0		ENST00000491626.5_1_1:118413193-118429252:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000491626.5_1_1:118413193-118429252:-|nuORF	ENST00000491626.5_1_1:118413193-118429252:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	524.2885131835938	2	523.808908	1045.60326	0.34685	0.00018168	0.40224	0.0002107	0.74909	0.00039238	523.8090732075742	20.483	0.16051	20.103	19.969	20.13	-0.37949					4	2	2	0	0	0	0.14607	1	7166	7166		53.404	41.764	1	4362200			12186	6079	7120	7162	11723	11723					0.08228557808342885
GLKGRVFEV	9	Unmodified	_GLKGRVFEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	HCT116MG_D190212_S2	2	502.79803466796875	2	502.798009	1003.58147	0.35139	0.00017668	-0.026242	-1.3195E-05	0.32514	0.00016348	502.79803615499344	37.155	0.30902	37.052	36.871	37.18	-0.10318					9	5	2	0	0	0	0.0045841	1	13918	13918		142.08	89.811	1	56585000			12187	3910	7121	7163	11724	11724					0.07981753059800667
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	HCT116MG_D190212_S2	2	427.7585754394531	2	427.758352	853.502152	-0.061119	-2.6144E-05	0.1012	4.3291E-05	0.040086	1.7147E-05	427.7584503134173	32.406	0.41632	32.176	31.942	32.359	-0.23009					13	7	2	0	0	0	0.011506	1	12001	12001		109.63	38.496	1	19474000			12188	2753	7122	7164	11725	11725					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	HCT116MG_D190212_S2	2	854.5106811523438	1	854.509429	853.502152	0.60364	0.00051581	-0.15191	-0.00012981	0.45172	0.000386	854.5094580778973	32.42	0.31189	32.19	31.995	32.306	-0.23009					8	5	2	0	0	0	0.031005	1	12027	12027		85.357	37.011	1	7995500			12189	2753	7122	7164	11726	11726					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	HCT116MG_D190212_S3	3	427.7582702636719	2	427.758352	853.502152	0.092178	3.943E-05	-0.40423	-0.00017291	-0.31205	-0.00013348	427.7581485916005	32.491	0.52071	32.212	31.786	32.306	-0.27841					13	9	2	0	0	0	0.043314	1	11879	11879		77.984	20.513	1	4901800			12190	2753	7122	7164	11727	11727					0.06954106105649771
GLKVVEID	8	Unmodified	_GLKVVEID_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;ENST00000523243.5_1_8:135490727-135577256:-|nuORF;ZFAT|p.D1074Y|1|0.46|ENSG00000066827|chr8:134520897-134520897|C/A|missense_variant	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MULTI-MSMS	HCT116MG_D190212_S1	1	872.5088500976562	1	872.50876	871.501483	0.83985	0.00073277	-0.30255	-0.00026398	0.5373	0.0004688	872.5080683105372	46.401	0.20677	46.401	46.234	46.44	0					6	3	2	0	0	0	0.36164	1	17614	17614		53.576	6.6547	1	20013000			12191	1177	7123	7165	11728	11728					0.060592666659431416
GLKVVEID	8	Unmodified	_GLKVVEID_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;ENST00000523243.5_1_8:135490727-135577256:-|nuORF;ZFAT|p.D1074Y|1|0.46|ENSG00000066827|chr8:134520897-134520897|C/A|missense_variant	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MULTI-MSMS	HCT116MG_D190212_S3	3	872.509765625	1	872.50876	871.501483	0.94806	0.00082719	-0.33638	-0.0002935	0.61168	0.0005337	872.5084065333725	46.764	0.26059	46.45	46.281	46.542	-0.31405					8	4	2	0	0	0	0.25164	1	17554	17554		63.563	0	1	6906800			12192	1177	7123	7165	11729	11729					0.060592666659431416
GLLERVKEL	9	Unmodified	_GLLERVKEL_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S1	1	528.8248901367188	2	528.824224	1055.63389	0.20311	0.00010741	0.4338	0.0002294	0.63691	0.00033682	528.8244614117709	43.961	0.25536	43.961	43.781	44.036	0					7	4	2	0	0	0	0.11498	1	16611	16611		60.074	8.4441	1	65304000			12193	2480	7124	7166	11730	11730					0.10830291402771763
GLLERVKEL	9	Unmodified	_GLLERVKEL_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S2	2	528.8242797851562	2	528.824224	1055.63389	0.43955	0.00023244	-0.47349	-0.00025039	-0.033943	-1.795E-05	528.8238888491525	43.969	0.30836	43.891	43.71	44.019	-0.078373					12	5	3	0	0	0	0.022991	1	16689	16689		110.79	28.903	1	102060000			12194	2480	7124	7166	11731	11731					0.10830291402771763
GLLIGTTGV	9	Unmodified	_GLLIGTTGV_					0	0	0		ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	HCT116MG_D190212_S2	2	830.4993286132812	1	830.498195	829.490919	0.91222	0.00075759	-0.22249	-0.00018478	0.68973	0.00057282	830.4978807893782	51.787	0.46244	51.603	51.373	51.835	-0.18369					18	8	3	0	0	0	0.0059651	1	19861	19861		129.2	22.355	1	187590000			12195	5150	7125	7167	11732	11732					0.06935284011524345
GLLIQLLLRIL	11	Unmodified	_GLLIQLLLRIL_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B;UBE4B|p.F894Lfs*19|1|0.23|ENSG00000130939|chr1:10149269-10149269|T/-|frameshift_variant;UBE4B|p.L1117Ffs*8|1|0.36|ENSG00000130939|chr1:10171152-10171153|-/T|frameshift_variant	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MSMS	HCT116MG_D190212_S4	4	422.2948913574219	3	422.295353	1263.86423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.514	1	13.351	12.851	13.851	-0.16233								0	0	0	0.9619	1	4241	4241		0.094841	0.094841	1				12196	3115	7126	7168	11733	11733					0.24285124735570207
GLLKSCGK	8	Unmodified	_GLLKSCGK_					0	0	0		nc|ENSG00000167641|Q96A00-2|PPP1R14A;ENSG00000167641|ENST00000301242|PPP1R14A	nc|ENSG00000167641|Q96A00-2|PPP1R14A	nc|ENSG00000167641|Q96A00-2|PPP1R14A	MSMS	HCT116MG_D190212_S4	4	403.2323303222656	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8301	1	4.5655	4.0655	5.0655	-0.26456								0	0	0	0.8837	1	1481	1481		2.3027	0	1				12197	4941	7127	7169	11734	11734					0.04271074825214782
GLLLENVEQTS	11	Unmodified	_GLLLENVEQTS_					0	0	0			REV__nc|ENSG00000140279|Q9NRD8|DUOX2	REV__nc|ENSG00000140279|Q9NRD8|DUOX2	MSMS	HCT116MG_D190212_S3	3	401.54632568359375	3	401.546954	1201.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.303	1	12.366	11.866	12.866	0.06246								0	0	0	0.96111	1	3827	3827		0.50596	0	1		+		12198	12287	7128	7170	11735	11735					0.026287547441143033
GLLLNRRTRPR	11	Unmodified	_GLLLNRRTRPR_					0	0	0			REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	MSMS	HCT116MG_D190212_S1	1	676.5787353515625	2	676.423294	1350.83203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.744	1	44.744	44.244	45.244	0								0	0	0	0.95731	1	16935	16935		2.4985	0.59211	1		+		12199	12980	7129	7171	11736	11736					0.17065150105099747
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	HCT116MG_D190212_S1	1	910.5250244140625	1	910.52441	909.517133	0.77996	0.00071017	0.26432	0.00024067	1.0443	0.00095084	910.5244461833779	57.126	0.20655	57.126	56.997	57.204	0					8	3	3	0	0	0	0.0047811	1	21978	21978		139.54	42.469	1	59406000			12200	2892	7130	7172	11737	11737					0.05875553183000193
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	HCT116MG_D190212_S2	2	910.5248413085938	1	910.52441	909.517133	0.76784	0.00069913	0.092169	8.3922E-05	0.86001	0.00078306	910.5243354819594	57.359	0.36395	57.184	57.003	57.367	-0.17499					17	6	4	0	0	0	0.0047811	1	22133	22133		139.54	42.469	1	187650000			12201	2892	7130	7172	11738	11738					0.05875553183000193
GLLREGSR	8	Unmodified	_GLLREGSR_					0	0	0			REV__nc|ENSG00000121274|Q8NDF8-4|TENT4B	REV__nc|ENSG00000121274|Q8NDF8-4|TENT4B	MULTI-SECPEP	HCT116MG_D190212_S2	2	443.7532653808594	2	444.256508	886.498464	0.096092	4.269E-05	-3.6816	-0.0016356	-3.5855	-0.0015929	444.2552218541903	41.028	0.20654	40.958	40.881	41.088	-0.069626					5	3	2	0	0	0	0.2988	1	15519	15519		15.847	5.0233	1	6707800	+		12202	11713	7131	7173	11739	11739					0.05067436331819408
GLLSANLEAL	10	Unmodified	_GLLSANLEAL_					0	0	0			REV__NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant	REV__NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	500.7876281738281	2	500.787307	999.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.09	1	44.012	43.512	44.512	-0.078373								0	0	0	0.37857	1	16736	16736		53.833	10.06	1		+		12203	13059	7132	7174	11740	11740					0.060263232404167866
GLLSANLEAL	10	Unmodified	_GLLSANLEAL_					0	0	0			REV__NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant	REV__NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	500.7877502441406	2	500.787307	999.560061	0.64815	0.00032458	1.3232	0.00066266	1.9714	0.00098725	500.78711158967207	44.829	0.52204	44.745	44.482	45.004	-0.084797					11	9	2	0	0	0	0.23155	1	17013	17013		36.506	3.7205	1	15043000	+		12204	13059	7132	7174	11741	11741					0.060263232404167866
GLLSLQAKQ	9	Unmodified	_GLLSLQAKQ_					0	0	0		ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	MULTI-MSMS	HCT116MG_D190212_S1	1	480.20159912109375	2	479.290017	956.565481	-0.046863	-2.2461E-05	-1.8209	-0.00087275	-1.8678	-0.00089521	479.28895104746067	50.765	0.46412	50.765	50.472	50.936	0					10	8	2	0	0	0	0.71898	1	19423	19423		3.9444	0	1	11147000			12205	1829	7133	7175	11742	11742					0.0854604682289164
GLLSPHYFY	9	Unmodified	_GLLSPHYFY_					0	0	0			REV__ENSG00000143032|ENST00000370445|BARHL2	REV__ENSG00000143032|ENST00000370445|BARHL2	MSMS	HCT116MG_D190212_S3	3	548.7382202148438	2	548.776742	1095.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.402	1	37.1	36.6	37.6	-0.30137								0	0	0	0.71969	1	13853	13853		18.135	4.6271	1		+		12206	12372	7134	7176	11743	11743					-0.005016420684341938
GLLSRKKT	8	Unmodified	_GLLSRKKT_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	MULTI-SECPEP	HCT116MG_D190212_S1	1	451.306396484375	2	451.792727	901.5709	0.018129	8.1905E-06	-0.92223	-0.00041666	-0.9041	-0.00040847	451.79219819556715	57.386	0.46719	57.386	57.204	57.671	0					15	8	2	0	0	0	0.33185	1	22038	22038		4.756	0	1	17990000	+		12207	13297	7135	7177	11744	11744					0.11617770405371175
GLLSRRPN	8	Unmodified	_GLLSRRPN_					0	0	0		ENST00000381086.9_1_7:45951973-45952270:-|nuORF	ENST00000381086.9_1_7:45951973-45952270:-|nuORF	ENST00000381086.9_1_7:45951973-45952270:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	456.7724609375	2	456.772326	911.530098	0.25794	0.00011782	0.13052	5.9616E-05	0.38845	0.00017743	456.7722799577121	49.369	0.99627	49.053	48.657	49.654	-0.31596					60	18	5	0	0	0	0.86564	1	18511	18511		2.5775	0	1	147830000			12208	7572	7136	7178	11745	11745					0.07079429085752054
GLLYQEYRDK	10	Unmodified	_GLLYQEYRDK_					0	0	0		nc|ENSG00000066248|Q8N5V2-2|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF;ENSG00000066248|ENST00000264051|NGEF	nc|ENSG00000066248|Q8N5V2-2|NGEF	nc|ENSG00000066248|Q8N5V2-2|NGEF	MSMS	HCT116MG_D190212_S1	1	428.891357421875	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.862	1	5.862	5.362	6.362	0								0	0	0	0.96804	1	1766	1766		0.69767	0.24315	1				12209	1170	7137	7179	11746	11746					0.020521672178801964
GLMDKLDEMFK	11	2 Oxidation (M)	_GLM(Oxidation (M))DKLDEM(Oxidation (M))FK_		GLM(1)DKLDEM(1)FK		GLM(44)DKLDEM(44)FK	0	0	2			REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15	REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15	MSMS	HCT116MG_D190212_S4	4	679.8184204101562	2	679.820163	1357.62577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.123	1	48.758	48.258	49.258	-0.365								0	0	0	0.58477	1	18210	18210		43.772	9.3707	1		+		12210	10767	7138	7180	11747	11747		149;150			-0.038733916912178756
GLMDNEIKV	9	Unmodified	_GLMDNEIKV_					0	0	0		nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;ENST00000523504.5_1_8:22880186-22926453:-|nuORF	nc|ENSG00000120889|O14763-2|TNFRSF10B	nc|ENSG00000120889|O14763-2|TNFRSF10B	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.8040771484375	2	509.765517	1017.51648	0.24611	0.00012546	0.071956	3.6681E-05	0.31807	0.00016214	509.7654166634145	44.33	0.21505	44.33	44.195	44.41	0					6	3	2	0	0	0	0.069171	1	16781	16781		65.235	29.108	1	9559600			12211	2716	7139	7181	11748	11748					0.008423904716437391
GLMDNEIKV	9	Unmodified	_GLMDNEIKV_					0	0	0		nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;ENST00000523504.5_1_8:22880186-22926453:-|nuORF	nc|ENSG00000120889|O14763-2|TNFRSF10B	nc|ENSG00000120889|O14763-2|TNFRSF10B	MULTI-MSMS	HCT116MG_D190212_S2	2	509.7652282714844	2	509.765517	1017.51648	0.28516	0.00014537	-0.25471	-0.00012984	0.030458	1.5526E-05	509.765174223233	44.333	0.21022	44.249	44.166	44.376	-0.084797					5	3	2	0	0	0	0.0053819	1	16862	16862		134.3	82.027	1	23674000			12212	2716	7139	7181	11749	11749					0.008423904716437391
GLMDTVKKV	9	Unmodified	_GLMDTVKKV_					0	0	0		nc|ENSG00000162419|Q9Y692|GMEB1;ENSG00000162419|ENST00000373816|GMEB1	nc|ENSG00000162419|Q9Y692|GMEB1	nc|ENSG00000162419|Q9Y692|GMEB1	MULTI-MSMS	HCT116MG_D190212_S2	2	495.7856140136719	2	495.786253	989.557952	0.35309	0.00017506	-0.38627	-0.00019151	-0.033177	-1.6449E-05	495.7859909856559	36.846	0.30916	36.731	36.55	36.859	-0.11478					8	5	2	0	0	0	0.0058997	1	13806	13806		129.77	55.35	1	30977000			12213	4518	7140	7182	11750	11750					0.0627557123096949
GLMDTVKKV	9	Unmodified	_GLMDTVKKV_					0	0	0		nc|ENSG00000162419|Q9Y692|GMEB1;ENSG00000162419|ENST00000373816|GMEB1	nc|ENSG00000162419|Q9Y692|GMEB1	nc|ENSG00000162419|Q9Y692|GMEB1	MULTI-MSMS	HCT116MG_D190212_S3	3	495.7851867675781	2	495.786253	989.557952	0.29495	0.00014623	-1.3362	-0.00066245	-1.0412	-0.00051622	495.78559827154567	37.044	0.26027	36.743	36.561	36.821	-0.30113					7	4	2	0	0	0	0.0080847	1	13723	13723		118.07	63.295	1	7144400			12214	4518	7140	7182	11751	11751					0.0627557123096949
GLMKKAYEL	9	Unmodified	_GLMKKAYEL_					0	0	0		nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D;ENSG00000213999|ENST00000424583|MEF2B	nc|ENSG00000116604|Q14814-6|MEF2D;ENSG00000213999|ENST00000424583|MEF2B	nc|ENSG00000116604|Q14814-6|MEF2D	MSMS	HCT116MG_D190212_S1	1	526.7937622070312	2	526.794078	1051.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.268	1	35.268	34.768	35.768	0								0	0	0	0.67254	1	13113	13113		20.415	0	1				12215	2521;6422	7141	7183	11752	11752					0.049878577480058084
GLMKKAYEL	9	Unmodified	_GLMKKAYEL_					0	0	0		nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D;ENSG00000213999|ENST00000424583|MEF2B	nc|ENSG00000116604|Q14814-6|MEF2D;ENSG00000213999|ENST00000424583|MEF2B	nc|ENSG00000116604|Q14814-6|MEF2D	MULTI-MSMS	HCT116MG_D190212_S2	2	526.794189453125	2	526.794078	1051.5736	0.39807	0.0002097	-0.98647	-0.00051967	-0.5884	-0.00030997	526.793900610763	35.205	0.30471	35.062	34.932	35.237	-0.14245					7	5	2	0	0	0	0.22946	1	13150	13150		38.176	0	1	25331000			12216	2521;6422	7141	7183	11753	11753					0.049878577480058084
GLMKKAYEL	9	Unmodified	_GLMKKAYEL_					0	0	0		nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D;ENSG00000213999|ENST00000424583|MEF2B	nc|ENSG00000116604|Q14814-6|MEF2D;ENSG00000213999|ENST00000424583|MEF2B	nc|ENSG00000116604|Q14814-6|MEF2D	MULTI-MATCH	HCT116MG_D190212_S1	1		2	526.794078	1051.5736	0.45392	0.00023912	-1.084	-0.00057106	-0.63012	-0.00033194	526.7936045408474	35.199	0.15351	35.199	35.114	35.267	0	0.06817	-8.8315E-06	NaN	38.176	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7458900			12217	2521;6422	7141	7183							0.049878577480058084
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	HCT116MG_D190212_S1	1	501.53106689453125	2	500.774731	999.534909	-0.18869	-9.4494E-05	-0.055344	-2.7715E-05	-0.24404	-0.00012221	500.7746067718929	38.618	0.31211	38.618	38.436	38.748	0					13	5	3	0	0	0	0.0019609	2	14462	14462;14466		187.3	62.871	1	98680000			12218	1405	7142	7184	11754;11755	11754					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7750244140625	2	500.774731	999.534909	0.33962	0.00017007	0.035014	1.7534E-05	0.37464	0.00018761	500.77467556887865	38.603	0.52721	38.519	38.33	38.857	-0.084618					27	9	4	0	0	0	0.0043772	1	14508	14508		145.13	55.729	1	365500000			12219	1405	7142	7184	11756	11756					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	HCT116MG_D190212_S2	2	1000.5423583984375	1	1000.54219	999.534909	0.4391	0.00043934	0.016753	1.6762E-05	0.45586	0.0004561	1000.542171364909	38.651	0.26853	38.566	38.382	38.65	-0.084618					9	4	3	0	0	0	7.5242E-05	1	14529	14529		203.64	66.215	1	39783000			12220	1405	7142	7184	11757	11757					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	HCT116MG_D190212_S3	3	500.77484130859375	2	500.774731	999.534909	0.3643	0.00018243	0.0052843	2.6462E-06	0.36958	0.00018508	500.77465711719395	38.888	0.36382	38.587	38.404	38.768	-0.30137					13	6	3	0	0	0	0.0043772	1	14412	14412		145.13	52.638	1	27865000			12221	1405	7142	7184	11758	11758					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	HCT116MG_D190212_S4	4	500.7746276855469	2	500.774731	999.534909	0.3339	0.00016721	-0.48507	-0.00024291	-0.15117	-7.5701E-05	500.7746510972501	38.946	0.29053	38.565	38.44	38.73	-0.38163					8	5	2	0	0	0	0.0080847	1	14300	14300		118.07	46.146	1	5749600			12222	1405	7142	7184	11759	11759					0.035122684378507074
GLNEHNHHL	9	Unmodified	_GLNEHNHHL_					0	0	0		ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	535.7598876953125	2	535.759946	1069.50534	0.53039	0.00028416	-0.52377	-0.00028062	0.006618	3.5456E-06	535.759755635747	17.906	0.20859	17.906	17.776	17.985	0					5	3	2	0	0	0	0.59184	1	6143	6143		11.64	3.047	1	3695500			12223	4421	7143	7185	11760	11760					-0.026632507876229283
GLNEHNHHL	9	Unmodified	_GLNEHNHHL_					0	0	0		ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	535.7601318359375	2	535.759946	1069.50534	0.096161	5.1519E-05	0.47906	0.00025666	0.57522	0.00030818	535.7600540011565	18.762	0.20775	18.399	18.269	18.477	-0.36325					5	3	2	0	0	0	0.26536	1	6492	6492		34.402	16.267	1	20347000			12224	4421	7143	7185	11761	11761					-0.026632507876229283
GLNELQEHLEE	11	Unmodified	_GLNELQEHLEE_					0	0	0			REV__ENSG00000146233|ENST00000275016|CYP39A1	REV__ENSG00000146233|ENST00000275016|CYP39A1	MULTI-MSMS	HCT116MG_D190212_S3	3	655.8151245117188	2	655.814781	1309.61501	0.76441	0.00050131	1.7311	0.0011353	2.4955	0.0016366	655.8153769090304	25.128	0.26101	25.022	24.891	25.152	-0.10618					10	4	3	0	0	0	0.70493	1	9004	9004		31.268	13.826	1	9039900	+		12225	12481	7144	7186	11762	11762					-0.027413347496121787
GLNELQEHLEE	11	Unmodified	_GLNELQEHLEE_					0	0	0			REV__ENSG00000146233|ENST00000275016|CYP39A1	REV__ENSG00000146233|ENST00000275016|CYP39A1	MULTI-SECPEP	HCT116MG_D190212_S3	3	655.3414916992188	2	655.814781	1309.61501	0.76441	0.00050131	1.7311	0.0011353	2.4955	0.0016366	655.8153769090304	25.128	0.26101	25.022	24.891	25.152	-0.10618					10	4	3	0	0	0	0.3506	1	8959	8959		21.537	16.64	1	9039900	+		12226	12481	7144	7186	11763	11763					-0.027413347496121787
GLNESPPILL	10	Unmodified	_GLNESPPILL_					0	0	0			REV__ENSG00000116285|ENST00000377482|ERRFI1	REV__ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	HCT116MG_D190212_S2	2	526.80322265625	2	526.802957	1051.59136	0.47769	0.00025165	-0.11381	-5.9955E-05	0.36388	0.00019169	526.8029101716271	55.799	0.15612	55.613	55.535	55.691	-0.18565					4	2	2	0	0	0	0.45751	1	21546	21546		38.176	5.3899	1	21916000	+		12227	11582	7145	7187	11764	11764					0.06762896274517516
GLNESPPILL	10	Unmodified	_GLNESPPILL_					0	0	0			REV__ENSG00000116285|ENST00000377482|ERRFI1	REV__ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	526.802957	1051.59136	0.39547	0.00020833	-0.13745	-7.2409E-05	0.25802	0.00013592	526.8028632158871	55.65	0.15501	55.65	55.554	55.709	0	0.018537	-8.6438E-06	NaN	38.176	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8407900	+		12228	11582	7145	7187							0.06762896274517516
GLNESPPILL	10	Unmodified	_GLNESPPILL_					0	0	0			REV__ENSG00000116285|ENST00000377482|ERRFI1	REV__ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	526.802957	1051.59136	0.47769	0.00025165	-0.11381	-5.9955E-05	0.36388	0.00019169	526.8029101716271	55.799	0.15612	55.613	55.535	55.691	-0.18565	-0.018537	1.6264E-05	NaN	38.176	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21916000	+		12229	11582	7145	7187							0.06762896274517516
GLNVAYSPYY	10	Unmodified	_GLNVAYSPYY_					0	0	0		ENST00000469797.5_1_14:75137455-75152321:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1	ENST00000469797.5_1_14:75137455-75152321:-|nuORF	ENST00000469797.5_1_14:75137455-75152321:-|nuORF	MSMS	HCT116MG_D190212_S4	4	382.6810607910156	3	382.853718	1145.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.338	1	22.111	21.611	22.611	-0.22777								0	0	0	0.92272	1	7765	7765		6.1918	1.1443	1				12230	2657	7146	7188	11765	11765					-0.027622671392464326
GLPAHILF	8	Unmodified	_GLPAHILF_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MSMS	HCT116MG_D190212_S2	2	434.2587890625	2	434.257988	866.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.771	1	56.592	56.092	57.092	-0.17904								0	0	0	0.8837	1	21909	21909		11.114	4.7604	1				12231	3015	7147	7189	11766	11766					0.06283311456616048
GLPASRVRYRV	11	Unmodified	_GLPASRVRYRV_					0	0	0		PCDH15|p.K1263Rfs*2|2|0.31|ENSG00000150275|chr10:53857193-53857193|T/-|frameshift_variant;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	PCDH15|p.K1263Rfs*2|2|0.31|ENSG00000150275|chr10:53857193-53857193|T/-|frameshift_variant	PCDH15|p.K1263Rfs*2|2|0.31|ENSG00000150275|chr10:53857193-53857193|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	637.37548828125	2	637.37802	1272.74149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.114	1	35.986	35.486	36.486	-0.12799								0	0	0	0.9387	1	13495	13495		12.241	3.4953	1				12232	4081	7148	7190	11767	11767					0.11602681056820074
GLPFCHPPPQ	10	Unmodified	_GLPFCHPPPQ_					0	0	0			REV__FOXN1|p.P583Lfs*5|1|0.16|ENSG00000109101|chr17:28537232-28537232|C/-|frameshift_variant	REV__FOXN1|p.P583Lfs*5|1|0.16|ENSG00000109101|chr17:28537232-28537232|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	546.7698364257812	2	546.768394	1091.52224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.629	1	25.338	24.838	25.838	-0.29022								0	0	0	0.53351	1	9091	9091		46.021	9.5148	1		+		12233	16835	7149	7191	11768	11768					-0.01986466226048833
GLPSSGSKSGP	11	Unmodified	_GLPSSGSKSGP_					0	0	0			REV__ZNF516|p.V1038Sfs*122|1|0.38|ENSG00000101493|chr18:76379003-76379003|G/-|frameshift_variant	REV__ZNF516|p.V1038Sfs*122|1|0.38|ENSG00000101493|chr18:76379003-76379003|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	487.25048828125	2	487.251089	972.487624	-0.23696	-0.00011546	-0.37508	-0.00018276	-0.61204	-0.00029822	487.2509184599551	23.441	0.26016	23.194	23.063	23.324	-0.24775					6	4	2	0	0	0	0.71887	1	8235	8235		14.838	0.93222	1	2551700	+		12234	11126	7150	7192	11769	11769					0.00027989166869701876
GLQDFDLLRV	10	Unmodified	_GLQDFDLLRV_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI;PRKCI|p.T276Nfs*16|1|0.35|ENSG00000163558|chr3:170280339-170280340|-/A|frameshift_variant	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	HCT116MG_D190212_S2	2	588.7698974609375	2	588.324588	1174.63462	0.63967	0.00037633	-0.27616	-0.00016247	0.36351	0.00021386	588.3242653832807	55.902	0.15509	55.717	55.587	55.742	-0.18565					4	2	2	0	0	0	0.11595	1	21550	21550		70.929	0	1	7020500			12235	4609	7151	7193	11770	11770					0.05429086051799459
GLQDGNDTFAL	11	Unmodified	_GLQDGNDTFAL_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B;TTC21B|p.D262Ifs*2|1|0.39|ENSG00000123607|chr2:165932984-165932984|C/-|frameshift_variant;nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	HCT116MG_D190212_S3	3	575.7726440429688	2	575.772385	1149.53022	0.5409	0.00031143	-0.34021	-0.00019588	0.20069	0.00011555	575.7720413426872	26.852	1.3543	26.7	25.836	27.19	-0.15133					46	25	2	0	0	0	0.68267	1	9718	9718		26.268	1.2772	1	6682300			12236	2812	7152	7194	11771	11771					-0.03856660495557662
GLQDGNDTFAL	11	Unmodified	_GLQDGNDTFAL_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B;TTC21B|p.D262Ifs*2|1|0.39|ENSG00000123607|chr2:165932984-165932984|C/-|frameshift_variant;nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	HCT116MG_D190212_S4	4	575.7722778320312	2	575.772385	1149.53022	0.39469	0.00022725	-0.26031	-0.00014988	0.13437	7.7368E-05	575.7720356524552	26.507	1.3511	26.206	25.869	27.221	-0.30087					60	25	3	0	0	0	0.68267	1	9643	9643		26.268	0	1	6358400			12237	2812	7152	7194	11772	11772					-0.03856660495557662
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	HCT116MG_D190212_S1	1	492.2435302734375	2	492.243264	982.471974	0.51339	0.00025271	0.030674	1.5099E-05	0.54406	0.00026781	492.2431852813631	29.295	0.3128	29.295	29.164	29.477	0					8	5	2	0	0	0	0.020353	1	10727	10727		96.111	10.839	1	21315000			12238	5347	7153	7195	11773	11773					-0.019962973501833403
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MSMS	HCT116MG_D190212_S2	2	492.2436828613281	2	492.243264	982.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.827	1	29.526	29.026	30.026	-0.30095								0	0	0	0.1044	1	10941	10941		54.774	6.4277	1				12239	5347	7153	7195	11774	11774					-0.019962973501833403
GLQEPSHAQP	10	Unmodified	_GLQEPSHAQP_					0	0	0			REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF	REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	532.2625732421875	2	532.261988	1062.50942	0.45259	0.0002409	0.056395	3.0017E-05	0.50898	0.00027091	532.2619078092786	21.77	0.89289	21.783	21.213	22.106	0.013304					35	16	3	0	0	0	0.55624	1	7482	7482		31.268	4.0451	1	7360400	+		12240	15061	7154	7196	11775	11775					-0.019332060845727028
GLQEPSHAQP	10	Unmodified	_GLQEPSHAQP_					0	0	0			REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF	REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	532.2762451171875	2	532.261988	1062.50942	0.47033	0.00025034	0.069685	3.709E-05	0.54001	0.00028743	532.2619289550713	21.873	0.83081	21.655	21.114	21.945	-0.21832					35	15	3	0	0	0	0.27227	1	7478	7478		20.415	0	1	8976100	+		12241	15061	7154	7196	11776	11776					-0.019332060845727028
GLQEPSHAQP	10	Unmodified	_GLQEPSHAQP_					0	0	0			REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF	REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	532.261988	1062.50942	0.38626	0.00020559	0.45161	0.00024038	0.83788	0.00044597	532.2620210496252	21.994	0.46882	21.609	21.375	21.844	-0.38503	-0.073038	0.00038843	NaN	31.268	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5828400	+		12242	15061	7154	7196							-0.019332060845727028
GLQFLYSPWW	10	Unmodified	_GLQFLYSPWW_					0	0	0		nc|ENSG00000173391|P78380-2|OLR1;nc|ENSG00000173391|P78380-3|OLR1;ENSG00000173391|ENST00000309539|OLR1	nc|ENSG00000173391|P78380-2|OLR1	nc|ENSG00000173391|P78380-2|OLR1	MSMS	HCT116MG_D190212_S3	3	432.8857116699219	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.376	1	13.446	12.946	13.946	0.069158								0	0	0	0.97045	1	4237	4237		0.15932	0	1				12243	5286	7155	7197	11777	11777					-0.002097085972536661
GLQHWVPEL	9	Unmodified	_GLQHWVPEL_					0	0	0		ENST00000559997.5_1_15:89448698-89456595:-|nuORF;ENST00000558352.5_1_15:89449802-89456595:-|nuORF;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;MFGE8|p.A307Pfs*66|1|0.25|ENSG00000140545|chr15:88899763-88899763|C/-|frameshift_variant;ENSG00000140545|ENST00000268150|MFGE8	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	ENST00000559997.5_1_15:89448698-89456595:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7564086914062	2	539.787641	1077.56073	0.34311	0.00018521	-0.21585	-0.00011651	0.12726	6.8692E-05	539.787501816367	53.489	0.20478	53.3	53.121	53.325	-0.1894					6	3	2	0	0	0	0.1754	2	20570	20570;20580		43.858	7.7313	1	16768000			12244	3674	7156	7198	11778;11779	11778					0.02505162680131434
GLQPLSLLST	10	Unmodified	_GLQPLSLLST_					0	0	0		nc|ENSG00000135248|Q96KD3-3|GARIN1B;ENSG00000135248|ENST00000621392|GARIN1B;nc|ENSG00000135248|Q96KD3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	MULTI-MSMS	HCT116MG_D190212_S1	1	514.8029174804688	2	514.802957	1027.59136	0.53278	0.00027428	-0.3381	-0.00017406	0.19468	0.00010022	514.8028352408347	29.451	0.31252	29.451	29.269	29.581	0					7	5	2	0	0	0	0.69918	1	10803	10803		20.454	0	1	5523500			12245	9465	7157	7199	11780	11780					0.0786689627452688
GLQPLSLLST	10	Unmodified	_GLQPLSLLST_					0	0	0		nc|ENSG00000135248|Q96KD3-3|GARIN1B;ENSG00000135248|ENST00000621392|GARIN1B;nc|ENSG00000135248|Q96KD3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	514.802957	1027.59136	0.53278	0.00027428	-0.3381	-0.00017406	0.19468	0.00010022	514.8028352408347	29.451	0.31252	29.451	29.269	29.581	0	0	0	NaN	20.454	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5523500			12246	9465	7157	7199							0.0786689627452688
GLQPPDGSS	9	Unmodified	_GLQPPDGSS_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	MULTI-MSMS	HCT116MG_D190212_S3	3	857.4000854492188	1	857.399938	856.392661	0.65021	0.00055749	0.59729	0.00051212	1.2475	0.0010696	857.4000146108195	22.729	0.45662	22.711	22.387	22.844	-0.018869					11	8	2	0	0	0	0.1754	1	7988	7988		43.858	2.0187	1	4354900			12247	6628	7158	7200	11781	11781					-0.04127944304320863
GLQRERPPSPG	11	Unmodified	_GLQRERPPSPG_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;ENST00000473964.5_1_1:2433496-2434522:+|nuORF;nc|ENSG00000149527|O75038-5|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MSMS	HCT116MG_D190212_S3	3	597.72021484375	2	597.322911	1192.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.027	1	27.839	27.339	28.339	-0.18847								0	0	0	0.93456	1	10126	10126		14.405	1.3629	1				12248	7249	7159	7201	11782	11782					0.04265835997807699
GLRFMFHQLHQ	11	Unmodified	_GLRFMFHQLHQ_					0	0	0			REV__CCDC168|p.S1838L|1|0.4|ENSG00000175820|chr13:102745184-102745184|G/A|missense_variant	REV__CCDC168|p.S1838L|1|0.4|ENSG00000175820|chr13:102745184-102745184|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	471.91168212890625	3	471.911796	1412.71356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.143	1	13.212	12.712	13.712	0.069158								0	0	0	0.95954	1	4150	4150		0.45452	0	1		+		12249	10112	7160	7202	11783	11783					0.023710348051054098
GLRGNRRN	8	Unmodified	_GLRGNRRN_					0	0	0		ENST00000414744.2_1_17:26926794-26943422:+|nuORF	ENST00000414744.2_1_17:26926794-26943422:+|nuORF	ENST00000414744.2_1_17:26926794-26943422:+|nuORF	MSMS	HCT116MG_D190212_S3	3	471.77093505859375	2	471.770649	941.526744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.284	1	12.347	11.847	12.847	0.06246								0	0	0	0.8837	1	3820	3820		2.5775	0	1				12250	7749	7161	7203	11784	11784					0.053641790317556115
GLRLKFIENKV	11	Unmodified	_GLRLKFIENKV_					0	0	0			REV__TLK1|p.E400_E401insSQPVKN|1|0.1|ENSG00000198586|chr2:171028374-171028375|-/ATTTTTGACAGGTTGACT|inframe_insertion	REV__TLK1|p.E400_E401insSQPVKN|1|0.1|ENSG00000198586|chr2:171028374-171028375|-/ATTTTTGACAGGTTGACT|inframe_insertion	MSMS	HCT116MG_D190212_S1	1	439.60894775390625	3	439.606478	1315.79761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.16	1	53.16	52.66	53.66	0								0	0	0	0.95743	1	20352	20352		2.4348	1.1051	1		+		12251	17638	7162	7204	11785	11785					0.15233889173623538
GLRLPVILLLP	11	Unmodified	_GLRLPVILLLP_					0	0	0			REV__nc|ENSG00000101844|Q8WYN0-3|ATG4A	REV__nc|ENSG00000101844|Q8WYN0-3|ATG4A	MSMS	HCT116MG_D190212_S1	1	602.4154663085938	2	602.413009	1202.81146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.978	1	25.978	25.478	26.478	0								0	0	0	0.95925	1	9367	9367		1.4819	0	1		+		12252	11133	7163	7205	11786	11786					0.21817166672758503
GLRPEQIQLYF	11	Unmodified	_GLRPEQIQLYF_					0	0	0		ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	MSMS	HCT116MG_D190212_S3	3	682.3706665039062	2	682.372069	1362.72959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.108	1	34.811	34.311	35.311	-0.29707								0	0	0	0.9387	1	12947	12947		12.241	4.0851	1				12253	3606	7164	7206	11787	11787					0.06273019522996037
GLRTGPCTSL	10	Unmodified	_GLRTGPCTSL_					0	0	0			REV__ENST00000483222.5_1_22:50687281-50687818:-|nuORF	REV__ENST00000483222.5_1_22:50687281-50687818:-|nuORF	MSMS	HCT116MG_D190212_S2	2	502.9617004394531	2	502.763309	1003.51206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.195	1	50.023	49.523	50.523	-0.1719								0	0	0	0.81484	1	19232	19232		26.884	5.137	1		+		12254	14509	7165	7207	11788	11788					0.010449260487234824
GLRVPCYGP	9	Unmodified	_GLRVPCYGP_					0	0	0			REV__ENSG00000166164|ENST00000394688|BRD7	REV__ENSG00000166164|ENST00000394688|BRD7	MULTI-SECPEP	HCT116MG_D190212_S1	1	481.25115966796875	2	481.249837	960.485122	0.20922	0.00010069	2.1576	0.0010384	2.3669	0.0011391	481.2508172045511	15.301	0.26072	15.301	15.223	15.484	0					5	4	2	0	0	0	0.26096	1	5106	5106		2.3027	0.4585	1	1549000	+		12255	13093	7166	7208	11789	11789					0.0032986222820454714
GLSAEVESDSL	11	Unmodified	_GLSAEVESDSL_					0	0	0			REV__ENSG00000121871|ENST00000475390|SLITRK3	REV__ENSG00000121871|ENST00000475390|SLITRK3	MSMS	HCT116MG_D190212_S1	1	553.8142700195312	2	553.764226	1105.5139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.064	1	37.064	36.564	37.564	0								0	0	0	0.75821	1	13836	13836		36.127	7.0454	1		+		12256	11722	7167	7209	11790	11790					-0.03463786452334716
GLSDHLDC	8	Unmodified	_GLSDHLDC_					0	0	0			REV__nc|ENSG00000180638|Q86VL8-5|SLC47A2	REV__nc|ENSG00000180638|Q86VL8-5|SLC47A2	MSMS	HCT116MG_D190212_S3	3	430.1837158203125	2	430.18436	858.354167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.461	1	13.53	13.03	14.03	0.069158								0	0	0	0.8837	1	4270	4270		0.79363	0	1		+		12257	17230	7168	7210	11791	11791					-0.08067573210519186
GLSDLISWGEV	11	Unmodified	_GLSDLISWGEV_					0	0	0		ENST00000512163.5_1_5:162864615-162864786:+|nuORF	ENST00000512163.5_1_5:162864615-162864786:+|nuORF	ENST00000512163.5_1_5:162864615-162864786:+|nuORF	MSMS	HCT116MG_D190212_S3	3	588.3032836914062	2	588.300778	1174.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.426	1	45.115	44.615	45.615	-0.31094								0	0	0	0.86874	1	17008	17008		24.021	8.1734	1				12258	8506	7169	7211	11792	11792					0.006693870609524311
GLSEPIFQL	9	Unmodified	_GLSEPIFQL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S2	2	1004.5667724609375	1	1003.54587	1002.5386	0.62394	0.00062615	-0.7364	-0.00073902	-0.11247	-0.00011287	1003.5459995002577	57.516	0.15533	57.341	57.263	57.418	-0.17494					4	2	2	0	0	0	0.012168	1	22216	22216		108	19.093	1	31432000			12259	5176	7170	7212	11793	11793					0.03742938211712499
GLSEPIFQL	9	Unmodified	_GLSEPIFQL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S2	2	502.2766418457031	2	502.276575	1002.5386	0.51248	0.00025741	0.0072106	3.6217E-06	0.51969	0.00026103	502.2764416871322	57.516	0.25828	57.341	57.263	57.521	-0.17494					5	4	2	0	0	0	0.32162	1	22240	22240		28.487	0	1	22519000			12260	5176	7170	7212	11794	11794					0.03742938211712499
GLSEPIFQL	9	Unmodified	_GLSEPIFQL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1003.54587	1002.5386	0.70882	0.00071133	0.10537	0.00010574	0.81419	0.00081707	1003.5457549401791	57.282	0.15596	57.282	57.204	57.36	0	-0.029604	0.00015176	NaN	108	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10904000			12261	5176	7170	7212							0.03742938211712499
GLSETILAV	9	Unmodified	_GLSETILAV_					0	0	0		NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	902.5210571289062	1	902.519325	901.512048	0.86618	0.00078174	0.17934	0.00016186	1.0455	0.0009436	902.5193845306485	54.979	0.25594	54.791	54.611	54.867	-0.18797					8	4	3	0	0	0	0.026974	1	21188	21188		89.427	11.442	1	53024000			12262	2394	7171	7213	11795	11795					0.057352493203779886
GLSGPPGA	8	Unmodified	_GLSGPPGA_					0	0	0		ENST00000506919.1_1_4:146560261-146567442:+|nuORF;ENSG00000151611|ENST00000649156|MMAA	ENST00000506919.1_1_4:146560261-146567442:+|nuORF	ENST00000506919.1_1_4:146560261-146567442:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	655.3416137695312	1	655.340966	654.33369	0.55257	0.00036212	0.3038	0.00019909	0.85637	0.00056121	655.3409563667715	26.576	1.091	26.214	25.454	26.545	-0.36164					31	20	2	0	0	0	0.32897	2	9481	9481;9738		56.541	6.8724	1	17493000			12263	4120	7172	7214	11796;11797	11796					-0.007303758079956424
GLSGPPGA	8	Unmodified	_GLSGPPGA_					0	0	0		ENST00000506919.1_1_4:146560261-146567442:+|nuORF;ENSG00000151611|ENST00000649156|MMAA	ENST00000506919.1_1_4:146560261-146567442:+|nuORF	ENST00000506919.1_1_4:146560261-146567442:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	655.3413696289062	1	655.340966	654.33369	0.77895	0.00051048	-0.022632	-1.4831E-05	0.75632	0.00049565	655.3407850920955	26.438	1.5623	26.289	25.213	26.775	-0.14924					56	29	3	0	0	0	0.23352	1	9482	9482		67.035	7.2401	1	26055000			12264	4120	7172	7214	11798	11798					-0.007303758079956424
GLSGPPGA	8	Unmodified	_GLSGPPGA_					0	0	0		ENST00000506919.1_1_4:146560261-146567442:+|nuORF;ENSG00000151611|ENST00000649156|MMAA	ENST00000506919.1_1_4:146560261-146567442:+|nuORF	ENST00000506919.1_1_4:146560261-146567442:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	655.3413696289062	1	655.340966	654.33369	0.53048	0.00034764	0.24105	0.00015797	0.77153	0.00050562	655.3409502563318	26.638	1.5602	26.337	25.297	26.857	-0.30087					62	29	3	0	0	0	0.1757	1	9447	9447		78.445	7.5802	1	23332000			12265	4120	7172	7214	11799	11799					-0.007303758079956424
GLSGRSYHGSP	11	Unmodified	_GLSGRSYHGSP_					0	0	0		ENST00000351948.8_1_2:17927215-17935030:-|nuORF	ENST00000351948.8_1_2:17927215-17935030:-|nuORF	ENST00000351948.8_1_2:17927215-17935030:-|nuORF	MSMS	HCT116MG_D190212_S4	4	559.27197265625	2	559.272887	1116.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.336	1	26.035	25.535	26.535	-0.30087								0	0	0	0.86874	1	9377	9377		24.021	1.3625	1				12266	7277	7173	7215	11800	11800					-0.0223840133601243
GLSLILNRR	9	Unmodified	_GLSLILNRR_					0	0	0			REV__TOMM6|p.N48S|1|0.38|ENSG00000214736|chr6:41789246-41789246|A/G|missense_variant	REV__TOMM6|p.N48S|1|0.38|ENSG00000214736|chr6:41789246-41789246|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	521.3296508789062	2	521.330008	1040.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.572	1	58.289	57.789	58.789	-0.28305								0	0	0	0.76973	1	22018	22018		1.8442	0.36234	1		+		12267	17653	7174	7216	11801	11801					0.12676533216745156
GLSLLRPRW	9	Unmodified	_GLSLLRPRW_					0	0	0			REV__ENST00000591991.1_1_19:5667238-5667808:+|nuORF	REV__ENST00000591991.1_1_19:5667238-5667808:+|nuORF	MSMS	HCT116MG_D190212_S4	4	549.2844848632812	2	549.33255	1096.65055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.322	1	33.937	33.437	34.437	-0.38558								0	0	0	0.768	1	12528	12528		7.9102	1.187	1		+		12268	16696	7175	7217	11802	11802					0.1060883707937137
GLSNGNNI	8	Unmodified	_GLSNGNNI_					0	0	0		ENST00000556933.1_1_14:65067322-65068336:-|nuORF;ENST00000502634.1_1_5:20304521-20305535:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	394.5145568847656	2	394.698492	787.382431	0.071221	2.8111E-05	-0.21091	-8.3245E-05	-0.13969	-5.5134E-05	394.69841088211643	17.144	0.46845	16.795	16.457	16.925	-0.34933					12	8	2	0	0	0	0.28869	1	5779	5779		24.674	7.7316	1	4603600			12269	1592	7176	7218	11803	11803					-0.01976507238907743
GLSRKFTRRTN	11	Unmodified	_GLSRKFTRRTN_					0	0	0		ENST00000489562.5_1_9:97811138-97811189:+|nuORF	ENST00000489562.5_1_9:97811138-97811189:+|nuORF	ENST00000489562.5_1_9:97811138-97811189:+|nuORF	MSMS	HCT116MG_D190212_S2	2	668.3858642578125	2	668.383834	1334.75312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.651	1	22.265	21.765	22.765	-0.3852								0	0	0	0.94755	1	8035	8035		7.609	1.4171	1				12270	8325	7177	7219	11804	11804					0.0991287808017205
GLSSGRKKKGK	11	Unmodified	_GLSSGRKKKGK_					0	0	0			REV__nc|ENSG00000102145|P15976-3|GATA1	REV__nc|ENSG00000102145|P15976-3|GATA1	MSMS	HCT116MG_D190212_S2	2	573.3602294921875	2	573.359296	1144.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.262	1	46.158	45.658	46.658	-0.10423								0	0	0	0.95113	1	17616	17616		5.7319	0.43497	1		+		12271	11145	7178	7220	11805	11805					0.13747589791228165
GLSTAERSP	9	Unmodified	_GLSTAERSP_					0	0	0			REV__ENST00000565089.5_1_16:28948886-28950281:+|nuORF	REV__ENST00000565089.5_1_16:28948886-28950281:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	459.238525390625	2	459.237981	916.461409	0.079178	3.6361E-05	-0.33503	-0.00015386	-0.25585	-0.0001175	459.23794361329556	22.938	0.57266	22.938	22.637	23.21	0					20	10	3	0	0	0	0.51829	1	8238	8238		15.847	3.3156	1	4676800	+		12272	13573	7179	7221	11806	11806					-0.00016280004615509824
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENST00000595822.1_1_19:47440583-47491508:+|nuORF;ENSG00000160007|ENST00000672722|ARHGAP35	ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENST00000595822.1_1_19:47440583-47491508:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	547.7959594726562	2	547.795663	1093.57677	0.21121	0.0001157	0.013057	7.1524E-06	0.22427	0.00012285	547.7957437972377	40.782	0.25497	40.782	40.591	40.846	0					10	4	3	0	0	0	0.40349	1	15355	15355		41.956	16.965	1	32522000			12273	4428	7180	7222	11807	11807					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENST00000595822.1_1_19:47440583-47491508:+|nuORF;ENSG00000160007|ENST00000672722|ARHGAP35	ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENST00000595822.1_1_19:47440583-47491508:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	547.7963256835938	2	547.795663	1093.57677	0.61381	0.00033624	0.82638	0.00045269	1.4402	0.00078893	547.7958909591014	40.796	0.41346	40.726	40.571	40.984	-0.069622					18	7	4	0	0	0	0.027428	1	15407	15407		106.94	37.835	1	115620000			12274	4428	7180	7222	11808	11808					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENST00000595822.1_1_19:47440583-47491508:+|nuORF;ENSG00000160007|ENST00000672722|ARHGAP35	ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENST00000595822.1_1_19:47440583-47491508:+|nuORF	MSMS	HCT116MG_D190212_S3	3	547.7958984375	2	547.795663	1093.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.074	1	40.772	40.272	41.272	-0.30185								0	0	0	0.80235	1	15268	15268		28.495	8.08	1				12275	4428	7180	7222	11809	11809					0.03372824126358864
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant;ENSG00000125817|ENST00000379751|CENPB	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7691345214844	2	493.768917	985.523281	0.20247	9.9975E-05	0.15718	7.7609E-05	0.35965	0.00017758	493.7689735761032	53.748	0.25841	53.558	53.377	53.636	-0.1894					7	4	2	0	0	0	0.030247	1	20691	20691		86.121	41.714	1	12034000			12276	400	7181	7223	11810	11810					0.029940714145254788
GLTINVLCY	9	Unmodified	_GLTINVLCY_					0	0	0			REV__S1PR4|p.S91G|1|0.12|ENSG00000125910|chr19:3179063-3179063|A/G|missense_variant	REV__S1PR4|p.S91G|1|0.12|ENSG00000125910|chr19:3179063-3179063|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	498.7356262207031	2	498.265153	994.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.917	1	26.606	26.106	27.106	-0.3114								0	0	0	0.50556	1	9612	9612		28.487	3.0875	1		+		12277	17489	7182	7224	11811	11811					0.018275958226013245
GLTLPRVEDGY	11	Unmodified	_GLTLPRVEDGY_					0	0	0			REV__ENST00000597211.1_1_19:7141597-7143049:-|nuORF	REV__ENST00000597211.1_1_19:7141597-7143049:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	610.4208984375	2	610.319502	1218.62445	0.42018	0.00025644	-1.572	-0.00095943	-1.1518	-0.00070298	610.3186995203623	42.037	0.36391	41.735	41.52	41.884	-0.30257					11	6	2	0	0	0	0.36447	1	15696	15696		7.609	0.88579	1	4305900	+		12278	16728	7183	7225	11812	11812					0.02388478326565746
GLTPMFGWNMK	11	Unmodified	_GLTPMFGWNMK_					0	0	0		ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MSMS	HCT116MG_D190212_S4	4	427.8755798339844	3	427.875471	1280.60458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.068	1	13.907	13.407	14.407	-0.16089								0	0	0	0.95954	1	4439	4439		0.45452	0	1				12279	6697	7184	7226	11813	11813					-0.024493122094099817
GLVGSLQEV	9	Unmodified	_GLVGSLQEV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	HCT116MG_D190212_S2	2	901.4991455078125	1	901.498923	900.491647	1.136	0.0010241	-0.19262	-0.00017364	0.94335	0.00085043	901.498556374696	47.484	0.36132	47.362	47.182	47.543	-0.12175					10	6	2	0	0	0	0.0077497	1	18127	18127		118.89	3.2027	1	24984000			12280	4174	7185	7227	11814	11814					0.03742078660570769
GLVNVESTQGP	11	Unmodified	_GLVNVESTQGP_					0	0	0		nc|ENSG00000121903|P17040-4|ZSCAN20;nc|ENSG00000121903|P17040-2|ZSCAN20;nc|ENSG00000121903|P17040-3|ZSCAN20;ENSG00000121903|ENST00000684572|ZSCAN20	nc|ENSG00000121903|P17040-4|ZSCAN20	nc|ENSG00000121903|P17040-4|ZSCAN20	MULTI-MSMS	HCT116MG_D190212_S3	3	550.7830810546875	2	550.782753	1099.55095	0.42897	0.00023627	0.14544	8.0104E-05	0.57441	0.00031638	550.7829420114714	23.543	0.36473	23.503	23.291	23.656	-0.03968					12	6	2	0	0	0	0.69749	1	8332	8332		22.736	2.3217	1	3308800			12281	2742	7186	7228	11815	11815					0.005159298840908377
GLVNVESTQGP	11	Unmodified	_GLVNVESTQGP_					0	0	0		nc|ENSG00000121903|P17040-4|ZSCAN20;nc|ENSG00000121903|P17040-2|ZSCAN20;nc|ENSG00000121903|P17040-3|ZSCAN20;ENSG00000121903|ENST00000684572|ZSCAN20	nc|ENSG00000121903|P17040-4|ZSCAN20	nc|ENSG00000121903|P17040-4|ZSCAN20	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	550.782753	1099.55095	0.42897	0.00023627	0.14544	8.0104E-05	0.57441	0.00031638	550.7829420114714	23.543	0.36473	23.503	23.291	23.656	-0.03968	0.01637	0.00036475	NaN	22.736	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3308800			12282	2742	7186	7228							0.005159298840908377
GLVTLCKALLI	11	Unmodified	_GLVTLCKALLI_					0	0	0			REV__nc|ENSG00000104044|Q04671-3|OCA2	REV__nc|ENSG00000104044|Q04671-3|OCA2	MSMS	HCT116MG_D190212_S1	1	572.3642578125	2	572.362127	1142.7097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.534	1	60.534	60.034	61.034	0								0	0	0	0.95113	1	23336	23336		5.7319	1.4026	1		+		12283	11205	7187	7229	11816	11816					0.14405552258676835
GLWACTAECKI	11	Unmodified	_GLWACTAECKI_					0	0	0		ENSG00000136099|ENST00000377942|PCDH8;nc|ENSG00000136099|O95206-2|PCDH8	ENSG00000136099|ENST00000377942|PCDH8	ENSG00000136099|ENST00000377942|PCDH8	MULTI-SECPEP	HCT116MG_D190212_S4	4	597.264892578125	2	597.785927	1193.5573	1.0126	0.0006053	-0.18774	-0.00011223	0.82483	0.00049307	597.7856808486954	31.713	0.46742	31.34	31.072	31.54	-0.37351					11	8	2	0	0	0	0.35292	1	11516	11516		15.248	15.248	1	4596500			12284	3395	7188	7230	11817	11817					-0.03173591480390314
GLWGPVHEL	9	Unmodified	_GLWGPVHEL_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	504.7710876464844	2	504.269084	1006.52362	0.34221	0.00017256	0.43432	0.00021901	0.77653	0.00039158	504.2692340780485	51.945	0.26608	51.945	51.807	52.073	0					10	4	3	0	0	0	0.065014	1	19873	19873		67.344	20.423	1	34101000			12285	6231	7189	7231	11818	11818					0.020614911343841413
GLWGPVHEL	9	Unmodified	_GLWGPVHEL_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	504.2694396972656	2	504.269084	1006.52362	0.6963	0.00035112	0.12129	6.1162E-05	0.81759	0.00041228	504.26906986308836	52.196	0.36135	52.008	51.832	52.193	-0.18726					15	6	3	0	0	0	0.043314	1	20038	20038		77.984	31.063	1	106100000			12286	6231	7189	7231	11819	11819					0.020614911343841413
GLWMTWHLP	9	Unmodified	_GLWMTWHLP_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	HCT116MG_D190212_S2	2	570.3546752929688	2	570.786587	1139.55862	0.56445	0.00032218	1.3464	0.00076852	1.9109	0.0010907	570.7873513120954	36.484	0.46635	36.356	35.967	36.434	-0.12799					13	8	2	0	0	0	0.19805	1	13546	13546		24.674	0	1	7474500	+		12287	14150	7190	7232	11820	11820					-0.005575893293325862
GLWRGCPFRY	10	Unmodified	_GLWRGCPFRY_					0	0	0			REV__ENSG00000170456|ENST00000389082|DENND5B	REV__ENSG00000170456|ENST00000389082|DENND5B	MULTI-SECPEP	HCT116MG_D190212_S2	2	419.3154602050781	3	418.878204	1253.61278	-0.1184	-4.9594E-05	-0.50964	-0.00021348	-0.62804	-0.00026307	418.87812799820074	10.886	0.31703	10.612	10.512	10.829	-0.27365					15	9	2	0	0	0	0.31198	1	3520	3520		0.15932	0	1	551370	+		12288	13300	7191	7233	11821	11821					-0.003879971777450919
GLWSLRGP	8	Unmodified	_GLWSLRGP_					0	0	0		ENST00000523985.5_1_6:100009538-100016472:-|nuORF;ENST00000523639.5_1_6:99998829-100016472:-|nuORF	ENST00000523985.5_1_6:100009538-100016472:-|nuORF	ENST00000523985.5_1_6:100009538-100016472:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.2921142578125	2	443.250695	884.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.491	1	22.491	21.991	22.991	0								0	0	0	0.8837	1	7965	7965		15.768	0	1				12289	8573	7192	7234	11822	11822					0.0399723930846676
GLYFTRPQ	8	Unmodified	_GLYFTRPQ_					0	0	0			REV__ENST00000502379.5_1_5:218428-224813:+|nuORF	REV__ENST00000502379.5_1_5:218428-224813:+|nuORF	MSMS	HCT116MG_D190212_S4	4	491.26007080078125	2	491.261259	980.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.242	1	17.072	16.572	17.572	-0.17047								0	0	0	0.8217	1	5705	5705		20.871	0.41758	1		+		12290	16118	7193	7235	11823	11823					0.016932046173337767
GLYKPRRRDR	10	Unmodified	_GLYKPRRRDR_					0	0	0		ENST00000564704.5_1_16:67289660-67296168:+|nuORF	ENST00000564704.5_1_16:67289660-67296168:+|nuORF	ENST00000564704.5_1_16:67289660-67296168:+|nuORF	MSMS	HCT116MG_D190212_S3	3	658.8892211914062	2	658.886544	1315.75853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.957	1	13.026	12.526	13.526	0.069158								0	0	0	0.96911	1	4079	4079		0.45834	0	1				12291	8848	7194	7236	11824	11824					0.1132860166262617
GLYQDPVTL	9	Unmodified	_GLYQDPVTL_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	HCT116MG_D190212_S1	1	1005.52587890625	1	1005.52514	1004.51786	0.65804	0.00066167	0.19393	0.000195	0.85197	0.00085667	1005.5253504687488	49.982	0.20576	49.982	49.853	50.059	0					6	3	2	0	0	0	0.0062667	1	19075	19075		126.57	61.331	1	18202000			12292	3730	7195	7237	11825	11825					0.01578347832048621
GLYQDPVTL	9	Unmodified	_GLYQDPVTL_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	HCT116MG_D190212_S2	2	1005.5254516601562	1	1005.52514	1004.51786	0.45434	0.00045685	-0.038642	-3.8855E-05	0.4157	0.000418	1005.5252431368888	50.182	0.35935	50.01	49.832	50.191	-0.1719					9	6	2	0	0	0	0.0058997	1	19254	19254		129.77	73.595	1	47142000			12293	3730	7195	7237	11826	11826					0.01578347832048621
GLYQDPVTL	9	Unmodified	_GLYQDPVTL_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MULTI-SECPEP	HCT116MG_D190212_S2	2	502.9617004394531	2	503.266207	1004.51786	0.33119	0.00016667	0.32455	0.00016333	0.65573	0.00033001	503.76791009754425	50.16	0.20429	49.992	49.887	50.091	-0.16833					5	3	2	0	0	0	0.0030111	1	19232	19232		136.33	57.605	1	13588000			12294	3730	7195	7237	11827	11827					0.01578347832048621
GLYSGVTTV	9	Unmodified	_GLYSGVTTV_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	HCT116MG_D190212_S1	1	896.472900390625	1	896.472374	895.465098	0.74877	0.00067125	0.13277	0.00011902	0.88154	0.00079028	896.4723057802668	41.992	0.31321	41.992	41.81	42.123	0					12	5	3	0	0	0	0.031005	1	15829	15829		85.357	27.885	1	78149000			12295	4914	7196	7238	11828	11828					0.013183897692329083
GLYSGVTTV	9	Unmodified	_GLYSGVTTV_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	HCT116MG_D190212_S2	2	896.4732055664062	1	896.472374	895.465098	1.0898	0.00097694	-0.091698	-8.2204E-05	0.99806	0.00089473	896.4722218670903	42.007	0.46643	41.939	41.756	42.223	-0.068199					21	8	4	0	0	0	0.031005	1	15889	15889		85.357	27.885	1	228070000			12296	4914	7196	7238	11829	11829					0.013183897692329083
GLYSGVTTV	9	Unmodified	_GLYSGVTTV_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	HCT116MG_D190212_S3	3	896.4735717773438	1	896.472374	895.465098	1.0655	0.0009552	-0.25884	-0.00023204	0.80667	0.00072316	896.4721074891426	42.265	0.31206	41.961	41.78	42.092	-0.30352					10	5	3	0	0	0	0.023611	1	15744	15744		92.822	18.399	1	12447000			12297	4914	7196	7238	11830	11830					0.013183897692329083
GLYSGVTTV	9	Unmodified	_GLYSGVTTV_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	HCT116MG_D190212_S4	4	896.4728393554688	1	896.472374	895.465098	0.70448	0.00063155	-0.25705	-0.00023044	0.44743	0.0004011	896.4718327059476	42.325	0.20759	41.949	41.839	42.046	-0.37565					5	3	2	0	0	0	0.2682	1	15575	15575		34.102	3.8776	1	1509700			12298	4914	7196	7238	11831	11831					0.013183897692329083
GLYYGQEN	8	Unmodified	_GLYYGQEN_					0	0	0			REV__nc|ENSG00000074603|Q6V1X1-4|DPP8	REV__nc|ENSG00000074603|Q6V1X1-4|DPP8	MSMS	HCT116MG_D190212_S3	3	472.21160888671875	2	472.211432	942.408311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.164	1	13.233	12.733	13.733	0.069158								0	0	0	0.8837	1	4158	4158		0.79363	0	1		+		12299	10800	7197	7239	11832	11832					-0.06519657787271171
GMDNDFHHY	9	Unmodified	_GMDNDFHHY_					0	0	0		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	568.718505859375	2	568.216723	1134.41889	0.38626	0.00021948	-0.046903	-2.6651E-05	0.33935	0.00019283	568.7184141556407	27.826	0.26039	27.826	27.696	27.956	0					7	4	2	0	0	0	0.057285	1	10141	10141		71.134	63.844	1	10694000			12300	678	7198	7240	11833	11833					-0.14293998404491504
GMDNDFHHY	9	Unmodified	_GMDNDFHHY_					0	0	0		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	568.217041015625	2	568.216723	1134.41889	0.43445	0.00024686	-0.28703	-0.0001631	0.14742	8.3767E-05	568.216654922873	28.23	0.25938	27.9	27.77	28.029	-0.32987					10	4	3	0	0	0	0.0038833	1	10289	10289		152.41	127.01	1	61042000			12301	678	7198	7240	11834	11834					-0.14293998404491504
GMDNDFHHY	9	Unmodified	_GMDNDFHHY_					0	0	0		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	379.14666748046875	3	379.146907	1134.41889	-0.14887	-5.6442E-05	-0.062524	-2.3706E-05	-0.21139	-8.0148E-05	379.1468773745605	28.23	0.25938	27.9	27.77	28.029	-0.32987					6	4	2	0	0	0	0.2682	1	10311	10311		24.991	17.382	1	26810000			12302	678	7198	7240	11835	11835					-0.14293998404491504
GMDNDFHHY	9	Unmodified	_GMDNDFHHY_					0	0	0		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	568.216723	1134.41889	0.29187	0.00016585	0.10725	6.0942E-05	0.39912	0.00022679	568.2166835152941	28.148	0.15672	27.942	27.863	28.02	-0.20593	0.052439	0.00033001	NaN	152.41	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3138600			12303	678	7198	7240							-0.14293998404491504
GMDNDFHHY	9	Unmodified	_GMDNDFHHY_					0	0	0		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		3	379.146907	1134.41889	-0.22353	-8.4752E-05	0.25523	9.6769E-05	0.031695	1.2017E-05	379.1469659683805	28.165	0.15672	27.96	27.863	28.02	-0.20593	0.029857	0.00019794	NaN	24.991	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1561300			12304	678	7198	7240							-0.14293998404491504
GMDNDFHHY	9	Oxidation (M)	_GM(Oxidation (M))DNDFHHY_		GM(1)DNDFHHY		GM(54)DNDFHHY	0	0	1		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	576.2146606445312	2	576.21418	1150.41381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.97	1	22.585	22.085	23.085	-0.3852								0	0	0	0.1107	1	8164	8164		53.833	39.927	1				12305	678	7198	7241	11836	11836		14			-0.15538302267123072
GMDRRTDAY	9	Unmodified	_GMDRRTDAY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;ENST00000497886.5_1_16:2128976-2136835:+|nuORF;TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	HCT116MG_D190212_S2	2	542.74609375	2	542.745647	1083.47674	0.42379	0.00023001	0.10517	5.7079E-05	0.52896	0.00028709	542.745715055816	20.011	0.36345	19.636	19.506	19.869	-0.37503					10	6	2	0	0	0	0.21258	1	6989	6989		39.95	28.309	1	16478000			12306	1880	7199	7242	11837	11837					-0.06165736479078987
GMFCCCCY	8	Unmodified	_GMFCCCCY_					0	0	0		ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	HCT116MG_D190212_S3	3	465.12786865234375	2	465.127773	928.240993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6439	1	9.67	9.17	10.17	0.026101								0	0	0	0.8837	1	2914	2914		0	0	1				12307	8367	7200	7243	11838	11838					-0.22599747515573654
GMFCCCCY	8	Unmodified	_GMFCCCCY_					0	0	0		ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	HCT116MG_D190212_S4	4	465.12548828125	2	465.127773	928.240993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5123	1	3.2477	2.7477	3.7477	-0.26456								0	0	0	0.8837	1	1074	1074		0	0	1				12308	8367	7200	7243	11839	11839					-0.22599747515573654
GMFCCCCY	8	Unmodified	_GMFCCCCY_					0	0	0		ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	HCT116MG_D190212_S4	4	465.1273498535156	2	465.127773	928.240993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7269	1	4.4623	3.9623	4.9623	-0.26456								0	0	0	0.8837	1	1446	1446		0	0	1				12309	8367	7200	7243	11840	11840					-0.22599747515573654
GMFCCCCY	8	Unmodified	_GMFCCCCY_					0	0	0		ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	HCT116MG_D190212_S4	4	465.1270446777344	2	465.127773	928.240993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0272	1	6.7771	6.2771	7.2771	-0.25015								0	0	0	0.8837	1	2152	2152		0	0	1				12310	8367	7200	7243	11841	11841					-0.22599747515573654
GMFCCCCY	8	Unmodified	_GMFCCCCY_					0	0	0		ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	HCT116MG_D190212_S4	4	465.1265869140625	2	465.127773	928.240993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4226	1	9.2129	8.7129	9.7129	-0.20971								0	0	0	0.8837	1	2881	2881		0	0	1				12311	8367	7200	7243	11842	11842					-0.22599747515573654
GMFCCCCY	8	Unmodified	_GMFCCCCY_					0	0	0		ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	HCT116MG_D190212_S4	4	465.12762451171875	2	465.127773	928.240993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.185	1	11.004	10.504	11.504	-0.18135								0	0	0	0.8837	1	3450	3450		0	0	1				12312	8367	7200	7243	11843	11843					-0.22599747515573654
GMGGITAV	8	Unmodified	_GMGGITAV_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000441609.1_1_6:162989483-162989972:+|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	705.3613891601562	1	705.359987	704.352711	0.96806	0.00068283	0.52293	0.00036885	1.491	0.0010517	705.3603421972311	40.269	0.20776	40.196	40.05	40.258	-0.072838					5	3	2	0	0	0	0.47906	1	15205	15205		42.968	22.097	1	10986000		+	12313	558;541	7201	7244	11844	11844					-0.011291625085959822
GMLDGLVNV	9	Unmodified	_GMLDGLVNV_					0	0	0		DNAJC10|p.P639Qfs*22|1|0.47|ENSG00000077232|chr2:182757788-182757788|T/-|frameshift_variant;nc|ENSG00000077232|Q8IXB1-3|DNAJC10;DNAJC10|p.N376Kfs*2|1|0.35|ENSG00000077232|chr2:182741286-182741287|-/A|frameshift_variant;ENSG00000077232|ENST00000264065|DNAJC10	DNAJC10|p.P639Qfs*22|1|0.47|ENSG00000077232|chr2:182757788-182757788|T/-|frameshift_variant	DNAJC10|p.P639Qfs*22|1|0.47|ENSG00000077232|chr2:182757788-182757788|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	917.4768676757812	1	917.476079	916.468803	0.79161	0.00072629	-0.58252	-0.00053445	0.20909	0.00019183	917.4760491324502	56.328	0.15535	56.146	56.052	56.207	-0.18261					4	2	2	0	0	0	0.027492	1	21751	21751		88.904	31.432	1	14176000			12314	715	7202	7245	11845	11845					0.007227362714502306
GMPDFLEKL	9	Unmodified	_GMPDFLEKL_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2705688476562	2	525.270435	1048.52632	0.49938	0.00026231	0.17547	9.2172E-05	0.67486	0.00035448	525.2703616946419	56.055	0.2043	55.873	55.745	55.949	-0.18261					5	3	2	0	0	0	0.16306	1	21646	21646		45.7	27.565	1	50387000			12315	1441	7203	7246	11846	11846					0.003995784770268074
GMPDFLEKL	9	Unmodified	_GMPDFLEKL_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MATCH	HCT116MG_D190212_S1	1		2	525.270435	1048.52632	0.38875	0.0002042	0.052156	2.7396E-05	0.44091	0.0002316	525.2704603720073	55.99	0.15305	55.99	55.862	56.015	0	0.058599	-1.3625E-06	NaN	45.7	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23444000			12316	1441	7203	7246							0.003995784770268074
GMPIMAPPP	9	Unmodified	_GMPIMAPPP_					0	0	0			REV__LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	REV__LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	455.730224609375	2	455.729892	909.445231	0.21188	9.6559E-05	0.47179	0.00021501	0.68367	0.00031157	455.7301285092007	38.437	0.46704	38.136	37.885	38.352	-0.30137					14	8	2	0	0	0	0.43045	1	14230	14230		20.871	11.524	1	4179400	+		12317	11268	7204	7247	11847	11847					-0.013114007667240912
GMPIMAPPP	9	Unmodified	_GMPIMAPPP_					0	0	0			REV__LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	REV__LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	455.73016357421875	2	455.729892	909.445231	0.071491	3.258E-05	0.49494	0.00022556	0.56643	0.00025814	455.7299512471816	38.484	0.47103	38.103	37.865	38.336	-0.38163					16	9	2	0	0	0	0.43045	1	14089	14089		20.871	11.524	1	5445900	+		12318	11268	7204	7247	11848	11848					-0.013114007667240912
GMPIMAPPP	9	Unmodified	_GMPIMAPPP_					0	0	0			REV__LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	REV__LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	455.729892	909.445231	0.21188	9.6559E-05	0.47179	0.00021501	0.68367	0.00031157	455.7301285092007	38.437	0.46704	38.136	37.885	38.352	-0.30137	0.016652	-9.9608E-06	NaN	20.871	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4179400	+		12319	11268	7204	7247							-0.013114007667240912
GMPIMAPPP	9	Unmodified	_GMPIMAPPP_					0	0	0			REV__LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	REV__LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	455.729892	909.445231	0.071491	3.258E-05	0.49494	0.00022556	0.56643	0.00025814	455.7299512471816	38.484	0.47103	38.103	37.865	38.336	-0.38163	-0.016652	1.1138E-05	NaN	20.871	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5445900	+		12320	11268	7204	7247							-0.013114007667240912
GMVQQIQSV	9	Unmodified	_GMVQQIQSV_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;DNAJA1|p.M178T|1|0.35|ENSG00000086061|chr9:33030557-33030557|T/C|missense_variant	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-SECPEP	HCT116MG_D190212_S2	2	495.704833984375	2	495.257859	988.501166	0.24146	0.00011958	2.5353	0.0012556	2.7767	0.0013752	495.25906096995993	41.069	0.30975	41	40.83	41.14	-0.068489					9	5	2	0	0	0	0.19551	1	15517	15517		34.102	7.2188	1	19303000			12321	1464	7205	7248	11849	11849					0.006455236744500326
GMWGGAMLGV	10	Unmodified	_GMWGGAMLGV_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	HCT116MG_D190212_S2	2	978.4239501953125	1	978.45357	977.446293	0.75732	0.00074101	-0.31131	-0.0003046	0.44601	0.0004364	978.4531847385759	57.347	0.15546	57.171	57.054	57.21	-0.17595					6	2	3	0	0	0	0.42503	1	22123	22123		40.449	15.049	1	13367000			12322	9680	7206	7249	11850	11850					-0.04333186397809641
GMYGKIAVMEL	11	Unmodified	_GMYGKIAVMEL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	606.3118286132812	2	606.311777	1210.609	0.57456	0.00034836	-0.3144	-0.00019063	0.26016	0.00015774	606.3115689260674	53.799	0.25851	53.61	53.48	53.739	-0.1894					7	4	2	0	0	0	0.032732	1	20707	20707		107.1	68.924	1	25650000			12323	4969	7207	7250	11851	11851					0.012121522135203122
GMYIFLHTV	9	Unmodified	_GMYIFLHTV_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	HCT116MG_D190212_S1	1	540.7817993164062	2	540.78097	1079.54739	0.58613	0.00031697	0.77497	0.00041909	1.3611	0.00073606	540.7813972453791	55.273	0.15209	55.273	55.197	55.349	0					4	2	2	0	0	0	0.49914	1	21250	21250		16.942	8.349	1	36683000			12324	5233	7208	7251	11852	11852					0.010795885765219282
GMYKNYAI	8	Unmodified	_GMYKNYAI_					0	0	0		ENST00000257290.9_1_4:55163057-55163270:+|nuORF	ENST00000257290.9_1_4:55163057-55163270:+|nuORF	ENST00000257290.9_1_4:55163057-55163270:+|nuORF	MSMS	HCT116MG_D190212_S1	1	480.237060546875	2	480.236396	958.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.316	1	15.316	14.816	15.816	0								0	0	0	0.8837	1	5079	5079		9.3474	0	1				12325	6825	7209	7252	11853	11853					-0.02265246382978603
GMYPNLVHV	9	Unmodified	_GMYPNLVHV_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.2631225585938	2	515.262945	1028.51134	0.49587	0.0002555	-0.14341	-7.3895E-05	0.35246	0.00018161	515.2630451559107	46.581	0.20539	46.47	46.369	46.574	-0.11122					7	3	3	0	0	0	0.077758	1	17772	17772		56.541	24.236	1	12647000			12326	1023	7210	7253	11854	11854					-0.0017786860032629193
GNCYMAHR	8	Unmodified	_GNCYMAHR_					0	0	0			REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	MSMS	HCT116MG_D190212_S2	2	476.1984558105469	2	476.199822	950.38509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3624	1	7.1466	6.6466	7.6466	-0.21581								0	0	0	0.8837	1	2308	2308		0.69038	0	1		+		12327	10945	7211	7254	11855	11855					-0.09208698377256042
GNFDNERLA	9	Unmodified	_GNFDNERLA_					0	0	0		nc|ENSG00000110076|P58401|NRXN2;NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2	nc|ENSG00000110076|P58401|NRXN2	nc|ENSG00000110076|P58401|NRXN2	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2464599609375	2	518.246338	1034.47812	0.36673	0.00019006	-0.050719	-2.6285E-05	0.31601	0.00016377	518.2463083404565	29.071	0.67697	28.849	28.629	29.306	-0.22195					30	12	3	0	0	0	0.2682	1	10519	10519		34.102	5.6156	1	118620000			12328	2234	7212	7255	11856	11856					-0.03773779118660059
GNFDNERLA	9	Unmodified	_GNFDNERLA_					0	0	0		nc|ENSG00000110076|P58401|NRXN2;NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2	nc|ENSG00000110076|P58401|NRXN2	nc|ENSG00000110076|P58401|NRXN2	MULTI-MSMS	HCT116MG_D190212_S4	4	518.2465209960938	2	518.246338	1034.47812	0.26693	0.00013834	-0.053056	-2.7496E-05	0.21388	0.00011084	518.2463525242313	29.148	0.62327	28.808	28.574	29.197	-0.34059					28	11	4	0	0	0	0.33687	1	10515	10515		26.884	5.137	1	66913000			12329	2234	7212	7255	11857	11857					-0.03773779118660059
GNFDNERLA	9	Unmodified	_GNFDNERLA_					0	0	0		nc|ENSG00000110076|P58401|NRXN2;NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2	nc|ENSG00000110076|P58401|NRXN2	nc|ENSG00000110076|P58401|NRXN2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	518.246338	1034.47812	0.248	0.00012853	0.1667	8.6394E-05	0.41471	0.00021492	518.2463937165439	29.001	0.61449	28.684	28.504	29.119	-0.31613	-0.09602	0.00013782	NaN	34.102	23	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229540000			12330	2234	7212	7255							-0.03773779118660059
GNFDNERLA	9	Unmodified	_GNFDNERLA_					0	0	0		nc|ENSG00000110076|P58401|NRXN2;NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2	nc|ENSG00000110076|P58401|NRXN2	nc|ENSG00000110076|P58401|NRXN2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	518.246338	1034.47812	0.36673	0.00019006	-0.050719	-2.6285E-05	0.31601	0.00016377	518.2463083404565	29.071	0.67697	28.849	28.629	29.306	-0.22195	0.068567	-8.7533E-05	NaN	34.102	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118620000			12331	2234	7212	7255							-0.03773779118660059
GNFDNERLA	9	Unmodified	_GNFDNERLA_					0	0	0		nc|ENSG00000110076|P58401|NRXN2;NRXN2|p.T1508Rfs*58|2|0.16|ENSG00000110076|chr11:64607814-64607814|G/-|frameshift_variant;ENSG00000110076|ENST00000265459|NRXN2	nc|ENSG00000110076|P58401|NRXN2	nc|ENSG00000110076|P58401|NRXN2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	518.246338	1034.47812	0.26693	0.00013834	-0.053056	-2.7496E-05	0.21388	0.00011084	518.2463525242313	29.148	0.62327	28.808	28.574	29.197	-0.34059	0.027452	-8.9955E-05	NaN	34.102	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66913000			12332	2234	7212	7255							-0.03773779118660059
GNFGGRSSGP	10	Unmodified	_GNFGGRSSGP_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000509706.1_1_8:83203861-83203996:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	468.2200927734375	2	468.220123	934.425693	0.37104	0.00017373	-0.26952	-0.0001262	0.10152	4.7535E-05	468.21993692882603	20.516	0.36433	20.516	20.331	20.696	0					14	6	3	0	0	0	0.0163	1	7169	7169		128.93	90.958	1	13954000			12333	441	7213	7256	11858	11858					-0.04414317461612427
GNGTARAGP	9	Unmodified	_GNGTARAGP_					0	0	0		RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant;ENSG00000179051|ENST00000375436|RCC2	RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant	RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	400.70550537109375	2	400.704109	799.393664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.621	1	40.621	40.121	41.121	0								0	0	0	0.76923	1	15273	15273		3.5965	1.019	1				12334	5532	7214	7257	11859	11859					-0.014056851447662666
GNGVLIIA	8	Unmodified	_GNGVLIIA_					0	0	0		OR13C4|p.K186Nfs*2|1|0.13|ENSG00000148136|chr9:104526652-104526652|T/-|frameshift_variant;OR13C3|p.F246Sfs*13|1|0.31|ENSG00000204246|chr9:104536077-104536077|A/-|frameshift_variant;ENSG00000204246|ENST00000641090|OR13C3;ENSG00000148136|ENST00000277216|OR13C4;nc|ENSG00000204246|Q8NGS6|OR13C3	OR13C4|p.K186Nfs*2|1|0.13|ENSG00000148136|chr9:104526652-104526652|T/-|frameshift_variant	OR13C4|p.K186Nfs*2|1|0.13|ENSG00000148136|chr9:104526652-104526652|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	378.7330627441406	2	378.734346	755.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.66	1	40.281	39.781	40.781	-0.37828								0	0	0	0.8837	1	14925	14925		0.69038	0	1				12335	4004	7215	7258	11860	11860					0.06663032185599604
GNKSLINVR	9	Unmodified	_GNKSLINVR_					0	0	0			REV__ENSG00000215203|ENST00000399770|GRXCR1	REV__ENSG00000215203|ENST00000399770|GRXCR1	MULTI-MSMS	HCT116MG_D190212_S4	4	500.79815673828125	2	500.79854	999.582528	0.3496	0.00017508	0.16301	8.1634E-05	0.51261	0.00025672	500.7984938356218	51.38	1.6093	51.03	50.525	52.135	-0.35028					74	30	4	0	0	0	0.71898	1	19016	19016		3.9444	0	1	72598000	+		12336	14281	7216	7259	11861	11861					0.08271967428720473
GNRAALHL	8	Unmodified	_GNRAALHL_					0	0	0			REV__ENSG00000064999|ENST00000360359|ANKS1A;REV__nc|ENSG00000085382|Q8IYU2-4|HACE1;REV__ENSG00000183421|ENST00000332512|RIPK4	REV__nc|ENSG00000085382|Q8IYU2-4|HACE1	MULTI-SECPEP	HCT116MG_D190212_S1	1	425.7524719238281	2	426.245944	850.477334	0.0061851	2.6364E-06	0.82764	0.00035278	0.83383	0.00035542	426.24623211540654	47.282	0.99082	47.282	46.751	47.742	0					51	19	4	0	0	0	0.33574	1	18105	18105		0.79363	0	1	2378400000	+		12337	10921;10693;13762	7217	7260	11862	11862					0.046114710229517186
GNRGQRWHQ	9	Unmodified	_GNRGQRWHQ_					0	0	0		RYR3|p.G2237Efs*57|1|0.42|ENSG00000198838|chr15:33722800-33722800|G/-|frameshift_variant;RYR3|p.E2211Qfs*84|1|0.14|ENSG00000198838|chr15:33722725-33722726|-/CA|frameshift_variant;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.E3943Rfs*18|1|0.12|ENSG00000198838|chr15:33837800-33837801|-/A|frameshift_variant;RYR3|p.N4580Mfs*8|1|0.37|ENSG00000198838|chr15:33853618-33853618|A/-|frameshift_variant;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3	RYR3|p.G2237Efs*57|1|0.42|ENSG00000198838|chr15:33722800-33722800|G/-|frameshift_variant	RYR3|p.G2237Efs*57|1|0.42|ENSG00000198838|chr15:33722800-33722800|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	380.19134521484375	3	380.19195	1137.55402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.719	1	22.7	22.2	23.2	-0.018869								0	0	0	0.76948	1	7985	7985		2.7352	0.23671	1				12338	6283	7218	7261	11863	11863					-0.009253374278841875
GNRQLVEVI	9	Unmodified	_GNRQLVEVI_					0	0	0			REV__tr|U7SNV7|U7SNV7_FUSNUDUF1858domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01718PE=4SV=1	REV__tr|U7SNV7|U7SNV7_FUSNUDUF1858domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01718PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	514.298583984375	2	514.298373	1026.58219	0.24977	0.00012846	-0.023731	-1.2205E-05	0.22604	0.00011625	514.2982679003816	51.272	0.51619	51.272	50.884	51.4	0					19	9	3	0	0	0	0.66792	1	19566	19566		7.2892	2.96	1	601170000	+		12339	17742	7219	7262	11864	11864					0.0699654770885445
GNRQLVEVI	9	Unmodified	_GNRQLVEVI_					0	0	0			REV__tr|U7SNV7|U7SNV7_FUSNUDUF1858domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01718PE=4SV=1	REV__tr|U7SNV7|U7SNV7_FUSNUDUF1858domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01718PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	514.298373	1026.58219	0.24977	0.00012846	-0.023731	-1.2205E-05	0.22604	0.00011625	514.2982679003816	51.272	0.51619	51.272	50.884	51.4	0	0	0	NaN	7.2892	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601170000	+		12340	17742	7219	7262							0.0699654770885445
GNRVGNPA	8	Unmodified	_GNRVGNPA_					0	0	0			REV__SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant	REV__SGPP1|p.I357Lfs*3|2|0.18|ENSG00000126821|chr14:63686363-63686363|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	784.0773315429688	1	784.406026	783.39875	1.0672	0.00083711	1.7778	0.0013945	2.845	0.0022316	784.407344317525	57.122	0.31232	56.821	56.623	56.935	-0.30039					8	5	2	0	0	0	0.87576	1	21414	21414		0.79363	0	1	2103200	+		12341	11847	7220	7263	11865	11865					-0.0016138128214606695
GNVAQMRCRQK	11	Unmodified	_GNVAQMRCRQK_					0	0	0			REV__ENST00000564224.1_1_9:34664535-34664784:-|nuORF	REV__ENST00000564224.1_1_9:34664535-34664784:-|nuORF	MSMS	HCT116MG_D190212_S4	4	430.887939453125	3	430.888774	1289.64449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.362	1	10.162	9.6623	10.662	-0.1993								0	0	0	0.96121	1	3179	3179		0.45452	0.21867	1		+		12342	16522	7221	7264	11866	11866					0.011256275138748606
GPAAADARPQP	11	Unmodified	_GPAAADARPQP_					0	0	0			REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.7698364257812	2	525.76998	1049.52541	0.12887	6.7757E-05	0.13663	7.1836E-05	0.2655	0.00013959	525.7701035544446	17.27	0.26014	17.355	17.173	17.433	0.084459					8	4	2	0	0	0	0.54124	1	5801	5801		41.956	12.115	1	1579100	+		12343	16752	7222	7265	11867	11867					0.0026250015232562873
GPAAADARPQP	11	Unmodified	_GPAAADARPQP_					0	0	0			REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	525.76998	1049.52541	0.12887	6.7757E-05	0.13663	7.1836E-05	0.2655	0.00013959	525.7701035544446	17.27	0.26014	17.355	17.173	17.433	0.084459	0	0	NaN	41.956	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1579100	+		12344	16752	7222	7265							0.0026250015232562873
GPAAAPSQQP	10	Unmodified	_GPAAAPSQQP_					0	0	0			REV__ENSG00000175166|ENST00000310118|PSMD2	REV__ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	HCT116MG_D190212_S2	2	462.2330627441406	2	462.232699	922.450845	0.10518	4.8618E-05	0.14234	6.5796E-05	0.24753	0.00011441	462.23273794405407	20.271	0.73029	19.891	19.346	20.076	-0.37949					23	13	2	0	0	0	0.69918	1	7033	7033		20.454	2.3073	1	7502300	+		12345	13505	7223	7266	11868	11868					-0.013482626590530344
GPAAGSTQFS	10	Unmodified	_GPAAGSTQFS_					0	0	0			REV__ENST00000537045.5_1_22:19024951-19025077:-|nuORF	REV__ENST00000537045.5_1_22:19024951-19025077:-|nuORF	MSMS	HCT116MG_D190212_S4	4	462.1465759277344	2	461.716882	921.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.577	1	17.407	16.907	17.907	-0.17047								0	0	0	0.93576	1	5841	5841		7.9102	0	1		+		12346	16348	7224	7267	11869	11869					-0.04464255413006413
GPAAKRTMRP	10	Unmodified	_GPAAKRTMRP_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MSMS	HCT116MG_D190212_S4	4	362.20733642578125	3	362.20632	1083.59713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.071	1	24.791	24.291	25.291	-0.27958								0	0	0	0.95241	1	8866	8866		4.1895	0	1				12347	4037	7225	7268	11870	11870					0.05867716305192516
GPAALRLKNP	10	Unmodified	_GPAALRLKNP_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MULTI-MSMS	HCT116MG_D190212_S2	2	519.237548828125	2	518.816733	1035.61891	0.05589	2.8997E-05	0.32542	0.00016883	0.38131	0.00019783	518.8168980913773	18.918	0.26114	18.549	18.418	18.68	-0.3695					6	4	2	0	0	0	0.84919	1	6481	6481		7.9102	0.62092	1	9272900			12348	6259	7226	7269	11871	11871					0.10252844325418664
GPAAPGPSDQP	11	Unmodified	_GPAAPGPSDQP_					0	0	0		ENSG00000129864|ENST00000250825|VCY;ENSG00000129862|ENST00000250823|VCY1B;ENSG00000169059|ENST00000381089|VCX3A;nc|ENSG00000205642|Q9H321-2|VCX3B;ENSG00000205642|ENST00000381032|VCX3B	ENSG00000129864|ENST00000250825|VCY	ENSG00000129864|ENST00000250825|VCY	MSMS	HCT116MG_D190212_S3	3	497.23583984375	2	497.235439	992.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.752	1	24.668	24.168	25.168	-0.083694								0	0	0	0.93374	1	8805	8805		14.838	3.198	1				12349	3045	7227	7270	11872	11872					-0.04020583867247751
GPAAPKGKKPP	11	Unmodified	_GPAAPKGKKPP_					0	0	0			REV__CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	REV__CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	524.31787109375	2	524.319109	1046.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.048	1	31.672	31.172	32.172	-0.37529								0	0	0	0.94284	1	11656	11656		10.074	2.1638	1		+		12350	10198	7228	7271	11873	11873					0.10221728468172842
GPAAQGEAP	9	Unmodified	_GPAAQGEAP_					0	0	0		ENST00000222329.8_1_19:42753332-42753395:-|nuORF	ENST00000222329.8_1_19:42753332-42753395:-|nuORF	ENST00000222329.8_1_19:42753332-42753395:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	399.19281005859375	2	399.193042	796.371532	-0.10011	-3.9963E-05	-0.11271	-4.4994E-05	-0.21282	-8.4957E-05	399.19297076539743	20.076	0.41617	19.701	19.558	19.974	-0.37503					11	7	2	0	0	0	0.1569	1	7027	7027		46.921	4.8263	1	5722800			12351	6756	7229	7272	11874	11874					-0.03479909613190557
GPAARDHSPP	10	Unmodified	_GPAARDHSPP_					0	0	0			REV__ENST00000409870.1_1_2:191045448-191045859:+|nuORF	REV__ENST00000409870.1_1_2:191045448-191045859:+|nuORF	MSMS	HCT116MG_D190212_S3	3	502.7489929199219	2	502.749047	1003.48354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.734	1	16.818	16.318	17.318	0.084467								0	0	0	0.93576	1	5574	5574		7.9102	0.62092	1		+		12352	15440	7230	7273	11875	11875					-0.018060555362012565
GPAAVYVEPQS	11	Unmodified	_GPAAVYVEPQS_					0	0	0			REV__ENST00000491475.1_1_10:123324010-123325402:-|nuORF	REV__ENST00000491475.1_1_10:123324010-123325402:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	559.2791137695312	2	559.279846	1116.54514	0.36739	0.00020547	-1.1943	-0.00066797	-0.82695	-0.0004625	559.2790493282807	34.147	0.20731	33.972	33.864	34.072	-0.17512					7	3	3	0	0	0	0.35307	1	12734	12734		5.7319	0	1	12505000	+		12353	10718	7231	7274	11876	11876					-0.00847168627569772
GPADLERAWVH	11	Unmodified	_GPADLERAWVH_					0	0	0		ENST00000491278.5_1_2:128392149-128394989:+|nuORF	ENST00000491278.5_1_2:128392149-128394989:+|nuORF	ENST00000491278.5_1_2:128392149-128394989:+|nuORF	MSMS	HCT116MG_D190212_S4	4	625.8195190429688	2	625.817461	1249.62037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.158	1	23.9	23.4	24.4	-0.25816								0	0	0	0.93374	1	8497	8497		14.838	3.3436	1				12354	8342	7232	7275	11877	11877					0.005544336235061564
GPADPAPSCR	10	Unmodified	_GPADPAPSCR_					0	0	0		ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	MSMS	HCT116MG_D190212_S3	3	485.724365234375	2	485.724184	969.433814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.227	1	15.31	14.81	15.81	0.083271								0	0	0	0.87399	1	4966	4966		19.257	2.3147	1				12355	6678	7233	7276	11878	11878					-0.05212506536508954
GPADPQSQPAD	11	Unmodified	_GPADPQSQPAD_					0	0	0		ENST00000373195.7_1_6:39883834-39902044:-|nuORF;ENST00000432280.2_1_6:39883834-39895306:-|nuORF;ENST00000373186.8_1_6:39883834-39895222:-|nuORF;ENST00000373181.8_1_6:39883834-39900087:-|nuORF;ENST00000373188.6_1_6:39883834-39902097:-|nuORF	ENST00000373195.7_1_6:39883834-39902044:-|nuORF	ENST00000373195.7_1_6:39883834-39902044:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7401733398438	2	541.741085	1081.46762	0.26784	0.0001451	-0.80026	-0.00043353	-0.53242	-0.00028843	541.7403956425487	17.004	0.67632	17.089	16.912	17.589	0.084467					15	12	2	0	0	0	0.375	1	5673	5673		57.249	19.074	1	2070000			12356	7472	7234	7277	11879	11879					-0.06985806563761798
GPADPQSQPAD	11	Unmodified	_GPADPQSQPAD_					0	0	0		ENST00000373195.7_1_6:39883834-39902044:-|nuORF;ENST00000432280.2_1_6:39883834-39895306:-|nuORF;ENST00000373186.8_1_6:39883834-39895222:-|nuORF;ENST00000373181.8_1_6:39883834-39900087:-|nuORF;ENST00000373188.6_1_6:39883834-39902097:-|nuORF	ENST00000373195.7_1_6:39883834-39902044:-|nuORF	ENST00000373195.7_1_6:39883834-39902044:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	541.740234375	2	541.741085	1081.46762	0.035938	1.9469E-05	-0.25732	-0.0001394	-0.22138	-0.00011993	541.7408924117908	17.104	0.36118	16.934	16.708	17.069	-0.1699					13	6	3	0	0	0	0.55672	1	5676	5676		40.239	11.158	1	1666500			12357	7472	7234	7277	11880	11880					-0.06985806563761798
GPADYRDVEK	10	Unmodified	_GPADYRDVEK_					0	0	0			REV__nc|ENSG00000065600|Q9H813-2|PACC1	REV__nc|ENSG00000065600|Q9H813-2|PACC1	MULTI-MSMS	HCT116MG_D190212_S3	3	575.2800903320312	2	575.280377	1148.5462	0.33173	0.00019084	0.089839	5.1683E-05	0.42157	0.00024252	575.2801962399903	16.63	1.0404	16.716	16.341	17.381	0.085424					38	19	3	0	0	0	0.58749	1	5606	5606		29.082	0.58707	1	3729500	+		12358	17076	7235	7278	11881	11881					-0.022129542586753814
GPADYRDVEK	10	Unmodified	_GPADYRDVEK_					0	0	0			REV__nc|ENSG00000065600|Q9H813-2|PACC1	REV__nc|ENSG00000065600|Q9H813-2|PACC1	MULTI-MSMS	HCT116MG_D190212_S4	4	575.2798461914062	2	575.280377	1148.5462	-0.042984	-2.4728E-05	0.59402	0.00034173	0.55103	0.000317	575.2805651029466	16.904	1.008	16.738	16.221	17.229	-0.16664					40	19	3	0	0	0	0.73913	1	5462	5462		17.113	0.96379	1	2704400	+		12359	17076	7235	7278	11882	11882					-0.022129542586753814
GPADYRDVEK	10	Unmodified	_GPADYRDVEK_					0	0	0			REV__nc|ENSG00000065600|Q9H813-2|PACC1	REV__nc|ENSG00000065600|Q9H813-2|PACC1	MSMS	HCT116MG_D190212_S4	4	575.2804565429688	2	575.280377	1148.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.414	1	17.244	16.744	17.744	-0.17047								0	0	0	0.91279	1	5775	5775		13.042	0	1		+		12360	17076	7235	7278	11883	11883					-0.022129542586753814
GPADYRDVEK	10	Unmodified	_GPADYRDVEK_					0	0	0			REV__nc|ENSG00000065600|Q9H813-2|PACC1	REV__nc|ENSG00000065600|Q9H813-2|PACC1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	575.280377	1148.5462	0.33173	0.00019084	0.089839	5.1683E-05	0.42157	0.00024252	575.2801962399903	16.63	1.0404	16.716	16.341	17.381	0.085424	-0.010947	-0.00037777	NaN	29.082	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3729500	+		12361	17076	7235	7278							-0.022129542586753814
GPAEAHWEQSA	11	Unmodified	_GPAEAHWEQSA_					0	0	0			REV__ENSG00000112273|ENST00000510882|HDGFL1	REV__ENSG00000112273|ENST00000510882|HDGFL1	MSMS	HCT116MG_D190212_S4	4	591.7620239257812	2	591.762352	1181.51015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.306	1	29.949	29.449	30.449	-0.3571								0	0	0	0.80071	1	10981	10981		32.786	15.673	1		+		12362	11453	7236	7279	11884	11884					-0.0733441143552227
GPAEAHWEQSA	11	Unmodified	_GPAEAHWEQSA_					0	0	0			REV__ENSG00000112273|ENST00000510882|HDGFL1	REV__ENSG00000112273|ENST00000510882|HDGFL1	MULTI-SECPEP	HCT116MG_D190212_S4	4	592.2835693359375	2	591.762352	1181.51015	0.72211	0.00042732	-0.30736	-0.00018189	0.41475	0.00024543	591.7621565785038	30.24	0.15595	29.883	29.753	29.909	-0.3571					4	2	2	0	0	0	0.3177	1	10951	10951		20.415	0	1	3206800	+		12363	11453	7236	7279	11885	11885					-0.0733441143552227
GPAEAQPQ	8	Unmodified	_GPAEAQPQ_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	797.3797607421875	1	797.378808	796.371532	0.59031	0.0004707	0.21795	0.00017379	0.80826	0.00064449	797.378859523519	16.958	1.1445	17.042	16.444	17.589	0.084467					39	21	3	0	0	0	0.31873	1	5755	5755		57.471	2.6978	1	12066000			12364	274	7237	7280	11886	11886					-0.03479909613190557
GPAEAQPQ	8	Unmodified	_GPAEAQPQ_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	797.3792114257812	1	797.378808	796.371532	0.78081	0.0006226	0.21811	0.00017391	0.99891	0.00079651	797.3790569929007	33.628	0.60351	33.337	33.011	33.615	-0.29013					16	11	2	0	0	0	0.66848	1	12338	12338		26.341	4.5946	1	3426200			12365	274	7237	7280	11887	11887					-0.03479909613190557
GPAEAQPQ	8	Unmodified	_GPAEAQPQ_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	398.70098876953125	2	399.193042	796.371532	-0.13461	-5.3736E-05	-0.13527	-5.3999E-05	-0.26988	-0.00010773	399.1929583060603	16.726	0.93643	16.81	16.288	17.225	0.084467					19	17	2	0	0	0	0.2761	1	5650	5650		28.173	7.302	1	1567200			12366	274	7237	7280	11888	11888					-0.03479909613190557
GPAEDRPQP	9	Unmodified	_GPAEDRPQP_					0	0	0		ENST00000397981.7_1_19:7968762-7974950:+|nuORF;ENST00000397983.7_1_19:7968783-7974950:+|nuORF	ENST00000397981.7_1_19:7968762-7974950:+|nuORF	ENST00000397981.7_1_19:7968762-7974950:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.73590087890625	2	483.735606	965.456658	0.082729	4.0019E-05	0.026898	1.3012E-05	0.10963	5.303E-05	483.735569668716	16.63	1.0404	16.715	16.133	17.174	0.085424					28	19	2	0	0	0	0.45549	1	5638	5638		19.439	1.304	1	3019600			12367	7677	7238	7281	11889	11889					-0.02745164147381729
GPAEDRPQPG	10	Unmodified	_GPAEDRPQPG_					0	0	0		ENST00000397981.7_1_19:7968762-7974950:+|nuORF;ENST00000397983.7_1_19:7968783-7974950:+|nuORF	ENST00000397981.7_1_19:7968762-7974950:+|nuORF	ENST00000397981.7_1_19:7968762-7974950:+|nuORF	MSMS	HCT116MG_D190212_S3	3	512.2462768554688	2	512.246338	1022.47812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.647	1	20.682	20.182	21.182	0.034473								0	0	0	0.83705	1	7153	7153		24.021	4.5816	1				12368	7677	7239	7282	11890	11890					-0.032217791186667455
GPAEPAGQRQ	10	Unmodified	_GPAEPAGQRQ_					0	0	0		ENST00000609104.5_1_10:11505598-11505790:-|nuORF	ENST00000609104.5_1_10:11505598-11505790:-|nuORF	ENST00000609104.5_1_10:11505598-11505790:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	505.7540283203125	2	505.75433	1009.49411	-0.33152	-0.00016767	0.93212	0.00047142	0.6006	0.00030376	505.7547996240014	16.688	0.30449	16.521	16.303	16.608	-0.16664					7	5	2	0	0	0	0.85662	1	5491	5491		7.2892	0.56607	1	964450			12369	9132	7240	7283	11891	11891					-0.010260728817570453
GPAEPELEEEL	11	Unmodified	_GPAEPELEEEL_					0	0	0		nc|ENSG00000120949|P28908-2|TNFRSF8;nc|ENSG00000120949|P28908-3|TNFRSF8;ENSG00000120949|ENST00000263932|TNFRSF8;ENST00000479933.2_1_1:12185996-12202585:+|nuORF	nc|ENSG00000120949|P28908-2|TNFRSF8	nc|ENSG00000120949|P28908-2|TNFRSF8	MSMS	HCT116MG_D190212_S4	4	606.7852783203125	2	606.785158	1211.55576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.702	1	17.527	17.027	18.027	-0.17501								0	0	0	0.95521	1	5891	5891		3.5965	0	1				12370	2719	7241	7284	11892	11892					-0.041552307637857666
GPAEPFQGLEF	11	Unmodified	_GPAEPFQGLEF_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MSMS	HCT116MG_D190212_S3	3	596.2852172851562	2	596.287671	1190.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.432	1	18.509	18.009	19.009	0.076334								0	0	0	0.94284	1	6259	6259		10.074	0.6908	1				12371	6606	7242	7285	11893	11893					-0.026868821105381357
GPAEPFQGLEF	11	Unmodified	_GPAEPFQGLEF_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MSMS	HCT116MG_D190212_S3	3	596.286376953125	2	596.287671	1190.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.51	1	18.587	18.087	19.087	0.076334								0	0	0	0.93552	1	6291	6291		13.906	3.8321	1				12372	6606	7242	7285	11894	11894					-0.026868821105381357
GPAEPSQPSGP	11	Unmodified	_GPAEPSQPSGP_					0	0	0		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-SECPEP	HCT116MG_D190212_S4	4	511.47222900390625	2	512.240721	1022.46689	0.24177	0.00012384	-2.22	-0.0011372	-1.9782	-0.0010133	512.2410824437858	21.245	0.25974	21.036	20.915	21.175	-0.20959					6	4	2	0	0	0	0.32941	1	7329	7329		13.906	0	1	1070200			12373	3619	7243	7286	11895	11895					-0.043446012128015354
GPAESDLHPQ	10	Unmodified	_GPAESDLHPQ_					0	0	0		ENST00000497973.5_1_1:46032543-46034819:+|nuORF	ENST00000497973.5_1_1:46032543-46034819:+|nuORF	ENST00000497973.5_1_1:46032543-46034819:+|nuORF	MSMS	HCT116MG_D190212_S3	3	525.746337890625	2	525.74617	1049.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.349	1	27.179	26.679	27.679	-0.16933								0	0	0	0.90475	1	9852	9852		14.838	0	1				12374	8405	7244	7287	11896	11896					-0.04497198838521399
GPAESLVYY	9	Unmodified	_GPAESLVYY_					0	0	0			REV__ENST00000527755.5_1_11:119003111-119005205:+|nuORF	REV__ENST00000527755.5_1_11:119003111-119005205:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	499.7792663574219	2	499.745108	997.475663	0.32555	0.00016269	-3.7817	-0.0018899	-3.4562	-0.0017272	499.74362012894704	20.323	0.57248	19.943	19.45	20.023	-0.37949					13	10	2	0	0	0	0.21559	1	6937	6937		13.508	5.5977	1	7483500	+		12375	13380	7245	7288	11897	11897					-0.02317627576326231
GPAFDTAMQGV	11	Unmodified	_GPAFDTAMQGV_					0	0	0			REV__nc|ENSG00000065150|O00410-2|IPO5	REV__nc|ENSG00000065150|O00410-2|IPO5	MSMS	HCT116MG_D190212_S3	3	547.2998046875	2	547.252774	1092.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.759	1	28.542	28.042	29.042	-0.21768								0	0	0	0.94284	1	10421	10421		10.074	0.6908	1		+		12376	10695	7246	7289	11898	11898					-0.05155084050784353
GPAGAGPGPA	10	Unmodified	_GPAGAGPGPA_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3;DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	MULTI-MSMS	HCT116MG_D190212_S3	3	751.373779296875	1	751.373329	750.366053	0.41091	0.00030875	0.39269	0.00029505	0.8036	0.0006038	751.3733889570809	16.453	0.6241	16.539	16.289	16.913	0.085424					18	11	3	0	0	0	0.64871	1	5456	5456		24.674	0	1	7337600			12377	686	7247	7290	11899	11899					-0.01911588404993836
GPAGAVGPR	9	Unmodified	_GPAGAVGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	391.28411865234375	2	391.219395	780.424236	-0.052351	-2.0481E-05	0.11493	4.4965E-05	0.062583	2.4484E-05	391.219388624588	18.531	0.36453	18.607	18.413	18.778	0.076334					13	6	3	0	0	0	0.22969	1	6284	6284		38.151	0	1	5850500			12378	4715	7248	7291	11900	11900					0.02524093240288039
GPAGEDVLPAT	11	Unmodified	_GPAGEDVLPAT_					0	0	0			REV__nc|ENSG00000186868|P10636-5|MAPT	REV__nc|ENSG00000186868|P10636-5|MAPT	MULTI-SECPEP	HCT116MG_D190212_S2	2	513.2728271484375	2	513.758746	1025.50294	0.43985	0.00022597	0.9233	0.00047435	1.3631	0.00070033	513.7588430488928	27.309	0.41435	26.957	26.766	27.18	-0.35254					9	7	2	0	0	0	0.3453	1	9964	9964		24.021	9.1823	1	2318700	+		12379	17250	7249	7292	11901	11901					-0.00879144035934587
GPAGGNGAAPA	11	Unmodified	_GPAGGNGAAPA_					0	0	0			REV__ENST00000326735.12_1_1:17316691-17319005:-|nuORF	REV__ENST00000326735.12_1_1:17316691-17319005:-|nuORF	MSMS	HCT116MG_D190212_S3	3	420.20416259765625	2	420.203941	838.39333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.306	1	16.391	15.891	16.891	0.085424								0	0	0	0.94924	1	5401	5401		6.7232	0.36906	1		+		12380	14909	7250	7293	11902	11902					-0.03233104864625602
GPAGHAPAGPR	11	Unmodified	_GPAGHAPAGPR_					0	0	0			REV__ENST00000575165.6_1_17:19314663-19315981:+|nuORF	REV__ENST00000575165.6_1_17:19314663-19315981:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	494.28302001953125	2	494.259582	986.504612	0.18203	8.9968E-05	-0.065866	-3.2555E-05	0.11616	5.7413E-05	494.25968734380103	20.029	0.46889	20.077	19.738	20.207	0.048107					11	8	2	0	0	0	0.32941	1	6897	6897		19.257	0	1	3054800	+		12381	16599	7251	7294	11903	11903					0.010819545633239613
GPAGHAPAGPR	11	Unmodified	_GPAGHAPAGPR_					0	0	0			REV__ENST00000575165.6_1_17:19314663-19315981:+|nuORF	REV__ENST00000575165.6_1_17:19314663-19315981:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	494.2594299316406	2	494.259582	986.504612	0.28758	0.00014214	-0.43704	-0.00021601	-0.14946	-7.3871E-05	494.25940824624644	20.372	0.41582	20.17	19.885	20.3	-0.20133					11	7	2	0	0	0	0.57714	1	6947	6947		37.974	1.847	1	4057700	+		12382	16599	7251	7294	11904	11904					0.010819545633239613
GPAGLFNNLET	11	Unmodified	_GPAGLFNNLET_					0	0	0		ENST00000586659.5_1_19:11275740-11275920:-|nuORF	ENST00000586659.5_1_19:11275740-11275920:-|nuORF	ENST00000586659.5_1_19:11275740-11275920:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	567.7916870117188	2	566.785296	1131.55604	0.54311	0.00030783	0.46958	0.00026615	1.0127	0.00057398	566.7850780988441	26.43	0.57266	26.281	26.098	26.671	-0.14924					22	10	3	0	0	0	0.72974	1	9583	9583		10.824	1.4408	1	14240000			12383	8995	7252	7295	11905	11905					-0.0044776625329632225
GPAGLLPNPR	10	Unmodified	_GPAGLLPNPR_					0	0	0		nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2;GLI2|p.R1387Lfs*143|1|0.1|ENSG00000074047|chr2:120990074-120990074|G/-|frameshift_variant;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2	nc|ENSG00000074047|P10070-4|GLI2	nc|ENSG00000074047|P10070-4|GLI2	MSMS	HCT116MG_D190212_S4	4	496.2876892089844	2	496.287808	990.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.88	1	27.559	27.059	28.059	-0.32157								0	0	0	0.90023	1	10001	10001		15.847	0	1				12384	1293	7253	7296	11906	11906					0.06540582399975392
GPAGLPGKDGP	11	Unmodified	_GPAGLPGKDGP_					0	0	0		COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant;COL5A1|p.G1351Efs*137|2|0.4|ENSG00000130635|chr9:134815605-134815605|C/-|frameshift_variant;COL5A1|p.D1172Tfs*104|1|0.22|ENSG00000130635|chr9:134810290-134810290|G/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	483.27996826171875	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.315	1	25.209	24.709	25.709	-0.10618								0	0	0	0.83407	1	9032	9032		28.487	5.3384	1				12385	527	7254	7297	11907	11907					0.01412596892100737
GPAGLPGVP	9	Unmodified	_GPAGLPGVP_					0	0	0		COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	764.4304809570312	1	764.430116	763.422839	0.89718	0.00068583	-0.43334	-0.00033126	0.46384	0.00035457	764.4299403963357	38.761	0.41722	38.677	38.492	38.909	-0.084618					9	7	2	0	0	0	0.011699	1	14569	14569		109.15	29.22	1	31537000			12386	512	7255	7298	11908	11908					0.031664591515209395
GPAGLPGVP	9	Unmodified	_GPAGLPGVP_					0	0	0		COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	764.4302368164062	1	764.430116	763.422839	0.52111	0.00039835	-0.89455	-0.00068382	-0.37344	-0.00028547	764.4301030277277	38.988	0.36363	38.686	38.508	38.872	-0.30137					22	6	5	0	0	0	0.011699	1	14445	14445		109.15	15.392	1	38594000			12387	512	7255	7298	11909	11909					0.031664591515209395
GPAGLPGVP	9	Unmodified	_GPAGLPGVP_					0	0	0		COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	764.4310913085938	1	764.430116	763.422839	0.8434	0.00064472	0.080305	6.1388E-05	0.92371	0.00070611	764.4300374685616	39.048	0.39406	38.668	38.49	38.884	-0.38055					19	8	3	0	0	0	0.011699	1	14316	14316		109.15	15.392	1	27650000			12388	512	7255	7298	11910	11910					0.031664591515209395
GPAGNSGPS	9	Unmodified	_GPAGNSGPS_					0	0	0			REV__COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	REV__COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	372.1684265136719	2	372.169567	742.324582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.433	1	21.452	20.952	21.952	0.018446								0	0	0	0.76781	1	7469	7469		8.5933	2.2392	1		+		12389	10236	7256	7299	11911	11911					-0.05688769164328278
GPAGPAGPR	9	Unmodified	_GPAGPAGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MSMS	HCT116MG_D190212_S1	1	390.2115173339844	2	390.211569	778.408586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.987	1	16.987	16.487	17.487	0								0	0	0	0.011345	1	5753	5753		104.8	22.935	1				12390	4715	7257	7300	11912	11912					0.010518067232396788
GPAGPAGPR	9	Unmodified	_GPAGPAGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	390.21142578125	2	390.211569	778.408586	-0.14756	-5.758E-05	0.093456	3.6468E-05	-0.054105	-2.1113E-05	390.2115534728063	16.385	0.72806	16.47	16.133	16.861	0.085424					30	13	4	0	0	0	0.0082751	1	5397	5397		117.6	20.524	1	8643800			12391	4715	7257	7300	11913	11913					0.010518067232396788
GPAGPAGPR	9	Unmodified	_GPAGPAGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	390.2117614746094	2	390.211569	778.408586	-0.49586	-0.00019349	0.42874	0.0001673	-0.067118	-2.619E-05	390.2117258679391	16.654	0.3989	16.487	16.261	16.66	-0.16664					16	7	3	0	0	0	0.013464	1	5433	5433		104.8	15.372	1	2986600			12392	4715	7257	7300	11914	11914					0.010518067232396788
GPAGPAGV	8	Unmodified	_GPAGPAGV_					0	0	0			REV__nc|ENSG00000139219|P02458-1|COL2A1	REV__nc|ENSG00000139219|P02458-1|COL2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	625.3311157226562	1	625.330402	624.323125	0.6143	0.00038414	-0.47536	-0.00029726	0.13893	8.6879E-05	625.3301501432692	25.173	0.31202	24.798	24.66	24.972	-0.37521					8	5	3	0	0	0	0.68942	1	9080	9080		24.21	7.1234	1	7497600	+		12393	12253	7258	7301	11915	11915					-0.004063584624191208
GPAGPEGQPG	10	Unmodified	_GPAGPEGQPG_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MSMS	HCT116MG_D190212_S2	2	433.703369140625	2	433.703774	865.392996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.504	1	16.162	15.662	16.662	-0.34183								0	0	0	0.69311	1	5558	5558		37.974	5.1883	1		+		12394	10913	7259	7302	11916	11916					-0.04508524584468887
GPAGPEGQPG	10	Unmodified	_GPAGPEGQPG_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S4	4	866.4012451171875	1	866.400272	865.392996	0.11859	0.00010275	0.70436	0.00061026	0.82295	0.000713	866.4008762087522	16.064	0.45513	15.901	15.615	16.07	-0.16364					14	8	2	0	0	0	0.15126	1	5190	5190		63.961	3.8866	1	1683100	+		12395	10913	7259	7302	11917	11917					-0.04508524584468887
GPAGPEGQPG	10	Unmodified	_GPAGPEGQPG_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S4	4	433.703857421875	2	433.703774	865.392996	-0.41405	-0.00017957	0.34449	0.00014941	-0.06956	-3.0168E-05	433.7038227029737	16.064	0.71232	15.901	15.511	16.224	-0.16364					17	13	2	0	0	0	0.48679	1	5199	5199		36.127	0	1	1603000	+		12396	10913	7259	7302	11918	11918					-0.04508524584468887
GPAGPEVE	8	Unmodified	_GPAGPEVE_					0	0	0		ENST00000466088.5_1_10:102286735-102286771:-|nuORF	ENST00000466088.5_1_10:102286735-102286771:-|nuORF	ENST00000466088.5_1_10:102286735-102286771:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	755.3572998046875	1	755.35701	754.349734	1.0639	0.00080362	-0.58567	-0.00044239	0.47822	0.00036123	755.3564224099862	24.765	1.5605	24.386	23.408	24.968	-0.37862					36	29	2	0	0	0	0.69862	1	8707	8707		23.148	0	1	9233000			12397	8103	7260	7303	11919	11919					-0.03726714361766881
GPAGPPGSP	9	Unmodified	_GPAGPPGSP_					0	0	0		nc|ENSG00000138080|Q9Y6C2-2|EMILIN1;ENSG00000138080|ENST00000380320|EMILIN1	nc|ENSG00000138080|Q9Y6C2-2|EMILIN1	nc|ENSG00000138080|Q9Y6C2-2|EMILIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	736.3621215820312	1	736.36243	735.355153	0.92113	0.00067829	-0.24376	-0.0001795	0.67737	0.00049879	736.3621602348966	20.114	0.78383	19.739	19.351	20.134	-0.37503					21	14	2	0	0	0	0.014796	1	6991	6991		101.72	12.295	1	16167000			12398	3528	7261	7304	11920	11920					-0.02310990779290023
GPAGPPGYGPQ	11	Unmodified	_GPAGPPGYGPQ_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	499.23846435546875	2	499.240524	996.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.982	1	15.819	15.319	16.319	-0.16364								0	0	0	0.93552	1	5196	5196		13.906	2.2658	1				12399	521	7262	7305	11921	11921					-0.03187976141998661
GPAGPQGPR	9	Unmodified	_GPAGPQGPR_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	418.72198486328125	2	418.722301	835.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.578	1	16.578	16.078	17.078	0								0	0	0	0.011345	1	5588	5588		104.8	7.7245	1				12400	513	7263	7306	11922	11922					0.005751917519432936
GPAGPQGPR	9	Unmodified	_GPAGPQGPR_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	418.72222900390625	2	418.722301	835.43005	0.027635	1.1571E-05	0.18711	7.8346E-05	0.21474	8.9917E-05	418.7222944610945	15.918	0.98823	16.003	15.769	16.757	0.085423					23	18	2	0	0	0	0.0037442	1	5228	5228		154.46	8.4562	1	5711700			12401	513	7263	7306	11923	11923					0.005751917519432936
GPAGPQGRP	9	Unmodified	_GPAGPQGRP_					0	0	0		ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	418.7222900390625	2	418.722301	835.43005	0.035806	1.4993E-05	0.18891	7.9099E-05	0.22471	9.4092E-05	418.72232449927566	16.936	0.41655	16.594	16.308	16.725	-0.34183					12	7	2	0	0	0	0.0063744	1	5720	5720		125.62	0	1	7559800			12402	7259	7264	7307	11924	11924					0.005751917519432936
GPAGPQGRPAP	11	Unmodified	_GPAGPQGRPAP_					0	0	0		ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	502.76861572265625	2	502.76724	1003.51993	0.35359	0.00017777	1.7087	0.0008591	2.0623	0.0010369	502.767699083371	20.218	0.31251	19.839	19.657	19.969	-0.37949					8	5	2	0	0	0	0.54229	1	7087	7087		41.84	14.956	1	9056700			12403	7259	7265	7308	11925	11925					0.018308213605109813
GPAGPQGRPAP	11	Unmodified	_GPAGPQGRPAP_					0	0	0		ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	502.7674255371094	2	502.76724	1003.51993	0.31458	0.00015816	0.57868	0.00029094	0.89326	0.0004491	502.76751625962817	19.852	0.51007	19.658	19.278	19.788	-0.19367					13	9	2	0	0	0	0.23091	1	6744	6744		71.922	31.973	1	3501700			12404	7259	7265	7308	11926	11926					0.018308213605109813
GPAGPQGRPAP	11	Unmodified	_GPAGPQGRPAP_					0	0	0		ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	502.766845703125	2	502.76724	1003.51993	0.36091	0.00018145	-1.4709	-0.00073954	-1.11	-0.00055808	502.7665987875531	25.849	0.26023	25.559	25.412	25.672	-0.29023					6	4	2	0	0	0	0.60935	1	9223	9223		34.402	11.665	1	2954000			12405	7259	7265	7308	11927	11927					0.018308213605109813
GPAGPQGRPAP	11	Unmodified	_GPAGPQGRPAP_					0	0	0		ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	ENST00000345617.7_1_2:240274529-240322319:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	502.76724	1003.51993	0.37504	0.00018856	0.3534	0.00017768	0.72845	0.00036624	502.7672853440469	19.56	0.36459	19.62	19.386	19.75	0.05983	-0.08559	-0.00014845	NaN	71.922	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4917300			12406	7259	7265	7308							0.018308213605109813
GPAGPSPGA	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GPAGPSPGA_					1	0	0			REV__ENST00000584573.5_1_17:61699792-61699912:+|nuORF	REV__ENST00000584573.5_1_17:61699792-61699912:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	752.3575439453125	1	752.357345	751.350068	0.82916	0.00062382	-0.1133	-8.5241E-05	0.71586	0.00053858	752.3571638762083	19.498	1.3939	19.311	18.453	19.847	-0.18674					36	26	2	0	0	0	0.072989	1	6415	6415		63.563	9.9873	1	6632700	+		12407	16644	7266	7309	11928	11928					-0.03555294641910223
GPAGPVGPA	9	Unmodified	_GPAGPVGPA_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MSMS	HCT116MG_D190212_S3	3	722.3832397460938	1	722.383165	721.375889	0.68514	0.00049493	-0.024049	-1.7372E-05	0.66109	0.00047756	722.3831485762839	25.82	0.36493	25.692	25.494	25.859	-0.12795					10	6	2	0	0	0	0.022679	1	9257	9257		93.763	13.828	1	4367100	+		12408	11506	7267	7310	11929	11929					0.004055996003785367
GPAGPVGPA	9	Unmodified	_GPAGPVGPA_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	HCT116MG_D190212_S3	3	722.2720336914062	1	722.383165	721.375889	0.68514	0.00049493	-0.024049	-1.7372E-05	0.66109	0.00047756	722.3831485762839	25.82	0.36493	25.692	25.494	25.859	-0.12795					10	6	2	0	0	0	0.048906	1	9217	9217		67.413	0	1	4367100	+		12409	11506	7267	7310	11930	11930					0.004055996003785367
GPAGPVGPA	9	Unmodified	_GPAGPVGPA_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MSMS	HCT116MG_D190212_S4	4	722.3837280273438	1	722.383165	721.375889	0.80993	0.00058508	-0.56042	-0.00040484	0.24951	0.00018024	722.3827503839818	25.936	0.4685	25.646	25.464	25.932	-0.29022					13	8	2	0	0	0	0.039337	1	9207	9207		79.935	12.522	1	4017400	+		12410	11506	7267	7310	11931	11931					0.004055996003785367
GPAGPVGPA	9	Unmodified	_GPAGPVGPA_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	HCT116MG_D190212_S4	4	722.2718505859375	1	722.383165	721.375889	0.80993	0.00058508	-0.56042	-0.00040484	0.24951	0.00018024	722.3827503839818	25.936	0.4685	25.646	25.464	25.932	-0.29022					13	8	2	0	0	0	0.048906	1	9157	9157		67.413	0	1	4017400	+		12411	11506	7267	7310	11932	11932					0.004055996003785367
GPAGPVGPAG	10	Unmodified	_GPAGPVGPAG_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MSMS	HCT116MG_D190212_S3	3	779.4049682617188	1	779.404629	778.397353	0.71815	0.00055973	0.21384	0.00016667	0.93199	0.0007264	779.404795154275	24.815	0.41617	24.731	24.549	24.966	-0.083694					11	7	2	0	0	0	0.037984	1	8843	8843		96.119	13.18	1	4381100	+		12412	11506	7268	7311	11933	11933					-0.000710153709064798
GPAGPVGPAG	10	Unmodified	_GPAGPVGPAG_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MSMS	HCT116MG_D190212_S4	4	779.4058227539062	1	779.404629	778.397353	1.0468	0.00081584	-0.18874	-0.00014711	0.85801	0.00066874	779.4044713677441	24.931	0.468	24.662	24.497	24.965	-0.26881					13	8	2	0	0	0	0.017315	1	8807	8807		126.52	15.965	1	3034200	+		12413	11506	7268	7311	11934	11934					-0.000710153709064798
GPAGPVGPAG	10	Unmodified	_GPAGPVGPAG_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	779.404629	778.397353	0.71815	0.00055973	0.21384	0.00016667	0.93199	0.0007264	779.404795154275	24.815	0.41617	24.731	24.549	24.966	-0.083694	0.034511	0.00017867	NaN	126.52	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4381100	+		12414	11506	7268	7311							-0.000710153709064798
GPAGPVGPAG	10	Unmodified	_GPAGPVGPAG_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	779.404629	778.397353	1.0468	0.00081584	-0.18874	-0.00014711	0.85801	0.00066874	779.4044713677441	24.931	0.468	24.662	24.497	24.965	-0.26881	-0.034511	-0.0001351	NaN	126.52	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3034200	+		12415	11506	7268	7311							-0.000710153709064798
GPAGPVGPVG	10	Unmodified	_GPAGPVGPVG_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	404.2214660644531	2	404.221603	806.428653	0.077977	3.152E-05	-0.47308	-0.00019123	-0.3951	-0.00015971	404.2213527645622	30.015	0.26013	29.658	29.545	29.805	-0.35711					7	4	2	0	0	0	0.64871	1	10905	10905		24.674	5.2349	1	1893200			12416	513	7269	7312	11935	11935					0.01769557663192245
GPAGQEPTADR	11	Unmodified	_GPAGQEPTADR_					0	0	0		ENST00000599325.1_1_19:50243282-50243519:-|nuORF	ENST00000599325.1_1_19:50243282-50243519:-|nuORF	ENST00000599325.1_1_19:50243282-50243519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	549.7633666992188	2	549.762352	1097.51015	0.30339	0.00016679	0.50573	0.00027803	0.80912	0.00044482	549.7626884916903	16.698	0.46823	16.782	16.548	17.016	0.084467					12	8	2	0	0	0	0.72139	1	5564	5564		13.906	0.86358	1	3993500			12417	9078	7270	7313	11936	11936					-0.03470411435546339
GPAGQQPP	8	Unmodified	_GPAGQQPP_					0	0	0		ENST00000170168.8_1_19:1827435-1827624:-|nuORF	ENST00000170168.8_1_19:1827435-1827624:-|nuORF	ENST00000170168.8_1_19:1827435-1827624:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	751.3737182617188	1	751.373329	750.366053	1.0158	0.00076324	-0.33648	-0.00025282	0.67932	0.00051042	751.3730004064256	16.991	0.57285	16.641	16.405	16.978	-0.34933					19	10	3	0	0	0	0.71835	1	5747	5747		20.871	0.41758	1	18067000			12418	6715	7271	7314	11937	11937					-0.019115884050052045
GPAGQQPP	8	Unmodified	_GPAGQQPP_					0	0	0		ENST00000170168.8_1_19:1827435-1827624:-|nuORF	ENST00000170168.8_1_19:1827435-1827624:-|nuORF	ENST00000170168.8_1_19:1827435-1827624:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	751.374267578125	1	751.373329	750.366053	0.27137	0.0002039	0.45063	0.00033859	0.722	0.00054249	751.3737242617744	16.593	0.29499	16.426	16.261	16.556	-0.16664					8	5	2	0	0	0	0.8029	1	5448	5448		11.114	0	1	1949700			12419	6715	7271	7314	11938	11938					-0.019115884050052045
GPAGREHPRM	10	Unmodified	_GPAGREHPRM_					0	0	0			REV__ENST00000219281.7_1_16:58035341-58035434:+|nuORF	REV__ENST00000219281.7_1_16:58035341-58035434:+|nuORF	MSMS	HCT116MG_D190212_S4	4	554.275146484375	2	554.277449	1106.54035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.291	1	16.127	15.627	16.627	-0.16364								0	0	0	0.84701	1	5321	5321		22.736	1.1993	1		+		12420	14515	7272	7315	11939	11939					-0.008663312513363053
GPAGREHPRM	10	Unmodified	_GPAGREHPRM_					0	0	0			REV__ENST00000219281.7_1_16:58035341-58035434:+|nuORF	REV__ENST00000219281.7_1_16:58035341-58035434:+|nuORF	MSMS	HCT116MG_D190212_S4	4	554.2753295898438	2	554.277449	1106.54035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.039	1	16.872	16.372	17.372	-0.16664								0	0	0	0.72975	1	5623	5623		36.127	1.7253	1		+		12421	14515	7272	7315	11940	11940					-0.008663312513363053
GPAGSLHV	8	Unmodified	_GPAGSLHV_					0	0	0			REV__ENSG00000140829|ENST00000268482|DHX38	REV__ENSG00000140829|ENST00000268482|DHX38	MSMS	HCT116MG_D190212_S4	4	369.20025634765625	2	369.20067	736.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.977	1	21.75	21.25	22.25	-0.22696								0	0	0	0.8837	1	7619	7619		11.114	0	1		+		12422	12311	7273	7316	11941	11941					0.008050019746519865
GPAGSSWT	8	Unmodified	_GPAGSSWT_					0	0	0		ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	762.3413696289062	1	762.341694	761.334418	0.58179	0.00044352	0.14625	0.00011149	0.72804	0.00055501	762.3417608182924	33.875	0.83132	33.581	33.144	33.976	-0.2939					24	15	2	0	0	0	0.37136	1	12381	12381		52.693	10.599	1	4656600			12423	8051	7274	7317	11942	11942					-0.05579581158951896
GPAGSSWT	8	Unmodified	_GPAGSSWT_					0	0	0		ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	762.3413696289062	1	762.341694	761.334418	1.0433	0.00079539	-0.3143	-0.0002396	0.72905	0.00055578	762.3412327696722	33.838	0.82961	33.454	33.051	33.881	-0.38426					22	16	2	0	0	0	0.47906	1	12267	12267		42.968	0.87343	1	4509800			12424	8051	7274	7317	11943	11943					-0.05579581158951896
GPAGSSWT	8	Unmodified	_GPAGSSWT_					0	0	0		ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	762.341694	761.334418	0.58179	0.00044352	0.14625	0.00011149	0.72804	0.00055501	762.3417608182924	33.875	0.83132	33.581	33.144	33.976	-0.2939	0.063941	0.00018023	NaN	52.693	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4656600			12425	8051	7274	7317							-0.05579581158951896
GPAGTSHFPQ	10	Unmodified	_GPAGTSHFPQ_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-4|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-4|KIAA1217	MSMS	HCT116MG_D190212_S4	4	499.7396240234375	2	499.738148	997.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.937	1	15.774	15.274	16.274	-0.16364								0	0	0	0.92272	1	5178	5178		10.824	1.4765	1		+		12426	11692	7275	7318	11944	11944					-0.0370886028475752
GPAGVEGKP	9	Unmodified	_GPAGVEGKP_					0	0	0			REV__COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	REV__COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	406.21923828125	2	406.21906	810.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.785	1	26.636	26.136	27.136	-0.14924								0	0	0	0.76902	1	9625	9625		4.3292	0	1		+		12427	10242	7276	7319	11945	11945					0.010772538005653587
GPAGVRRMMMM	11	Unmodified	_GPAGVRRMMMM_					0	0	0			REV__ENST00000403263.5_1_2:206893018-206911231:-|nuORF	REV__ENST00000403263.5_1_2:206893018-206911231:-|nuORF	MSMS	HCT116MG_D190212_S3	3	618.7967529296875	2	618.795249	1235.57594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.162	1	16.247	15.747	16.747	0.085424								0	0	0	0.90571	1	5343	5343		19.257	4.4187	1		+		12428	15400	7277	7320	11946	11946					-0.03242076381843617
GPAGWHRA	8	Unmodified	_GPAGWHRA_					0	0	0			REV__ENST00000429172.5_2_2:171627798-171634191:+|nuORF	REV__ENST00000429172.5_2_2:171627798-171634191:+|nuORF	MSMS	HCT116MG_D190212_S4	4	426.216552734375	2	426.217186	850.419819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.397	1	25.118	24.618	25.618	-0.27958								0	0	0	0.8837	1	8998	8998		11.114	0.29054	1		+		12429	15573	7278	7321	11947	11947					-0.011373711826308863
GPAHGLSALQP	11	Unmodified	_GPAHGLSALQP_					0	0	0			REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF	REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF	MSMS	HCT116MG_D190212_S4	4	524.2816162109375	2	524.282723	1046.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.738	1	30.374	29.874	30.874	-0.36416								0	0	0	0.90571	1	11127	11127		19.257	5.3509	1		+		12430	15958	7279	7322	11948	11948					0.02947974674748366
GPAHPTWVGP	10	Unmodified	_GPAHPTWVGP_					0	0	0			REV__ENST00000523898.5_1_8:8860347-8860590:+|nuORF	REV__ENST00000523898.5_1_8:8860347-8860590:+|nuORF	MSMS	HCT116MG_D190212_S4	4	509.75701904296875	2	509.758884	1017.50321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.704	1	22.467	21.967	22.967	-0.23758								0	0	0	0.91507	1	7913	7913		12.532	0	1		+		12431	16257	7280	7323	11949	11949					-0.004836795254277604
GPAHQPGGA	9	Unmodified	_GPAHQPGGA_					0	0	0		ENST00000428043.5_3_17:61566060-61568348:+|nuORF	ENST00000428043.5_3_17:61566060-61568348:+|nuORF	ENST00000428043.5_3_17:61566060-61568348:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	791.3804931640625	1	791.379477	790.372201	0.86506	0.00068459	0.41374	0.00032743	1.2788	0.001012	791.3797210069807	19.394	0.26005	19.207	19.025	19.285	-0.18674					6	4	2	0	0	0	0.63193	1	6563	6563		9.3474	9.3474	1	1878100			12432	7827	7281	7324	11950	11950					-0.03137070173477241
GPAKENGHLQ	10	Unmodified	_GPAKENGHLQ_					0	0	0		ENSG00000142530|ENST00000600100|GARIN5A;nc|ENSG00000142530|Q6IPT2-2|GARIN5A;ENST00000600330.1_1_19:50978580-50979281:-|nuORF	ENSG00000142530|ENST00000600100|GARIN5A	ENSG00000142530|ENST00000600100|GARIN5A	MULTI-MSMS	HCT116MG_D190212_S4	4	526.2711181640625	2	525.76998	1049.52541	-0.24052	-0.00012646	1.0687	0.00056187	0.82813	0.00043541	525.7705486179738	15.395	0.48366	15.233	14.926	15.409	-0.16173					13	9	2	0	0	0	0.78781	1	4919	4919		13.042	4.8869	1	2120600			12433	3760	7282	7325	11951	11951					0.0026250015232562873
GPAKEQEPMPT	11	Unmodified	_GPAKEQEPMPT_					0	0	0		nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	nc|ENSG00000206053|Q9H910-2|JPT2	MULTI-SECPEP	HCT116MG_D190212_S1	1	593.1580810546875	2	592.784438	1183.55432	0.76545	0.00045375	0.25206	0.00014941	1.0175	0.00060316	592.784757961484	26.031	0.15664	26.031	25.927	26.084	0					4	2	2	0	0	0	0.36367	1	9356	9356		0.26902	0	1	4889700			12434	6392	7283	7326	11952	11952					-0.030111433335378024
GPAKQLLP	8	Unmodified	_GPAKQLLP_					0	0	0		ENST00000573483.1_1_17:3785816-3788993:-|nuORF;CAMKK1|p.R457Tfs*8|1|0.39|ENSG00000004660|chr17:3865984-3865985|-/T|frameshift_variant;ENSG00000004660|ENST00000348335|CAMKK1;nc|ENSG00000004660|Q8N5S9-2|CAMKK1	ENST00000573483.1_1_17:3785816-3788993:-|nuORF	ENST00000573483.1_1_17:3785816-3788993:-|nuORF	MSMS	HCT116MG_D190212_S4	4	412.25433349609375	2	412.255446	822.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.447	1	26.146	25.646	26.646	-0.30087								0	0	0	0.8837	1	9422	9422		11.114	1.767	1				12435	317	7284	7327	11953	11953					0.0779900759400789
GPALDAGPR	9	Unmodified	_GPALDAGPR_					0	0	0			REV__ENST00000372980.3_1_20:42815453-42815639:-|nuORF	REV__ENST00000372980.3_1_20:42815453-42815639:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	853.4524536132812	1	853.452642	852.445365	0.71837	0.0006131	-0.16694	-0.00014248	0.55143	0.00047062	853.4523311931962	22.105	0.5714	21.877	21.416	21.988	-0.22777					16	10	2	0	0	0	0.1037	1	7613	7613		57.471	9.1255	1	2121300	+		12436	15183	7285	7328	11954	11954					0.013240585491416823
GPALDKLEEP	10	Unmodified	_GPALDKLEEP_					0	0	0			REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	536.1654663085938	2	534.782222	1067.54989	0.43439	0.0002323	-0.28226	-0.00015095	0.15213	8.1356E-05	534.7822578336347	19.04	1.3016	19.109	18.927	20.228	0.069159					67	24	6	0	0	0	0.85662	1	6696	6696		7.2892	0.56607	1	1559499999.9999998	+		12437	12713	7286	7329	11955	11955					0.01881715515196447
GPALSDDEQ	9	Unmodified	_GPALSDDEQ_					0	0	0			REV__ENSG00000130700|ENST00000252997|GATA5	REV__ENSG00000130700|ENST00000252997|GATA5	MSMS	HCT116MG_D190212_S1	1	466.2021789550781	2	466.203804	930.393055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.45	1	27.45	26.95	27.95	0								0	0	0	0.76781	1	9961	9961		8.5933	0	1		+		12438	11935	7287	7330	11956	11956					-0.07492569375142466
GPAMDPPLPSP	11	Unmodified	_GPAMDPPLPSP_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	HCT116MG_D190212_S3	3	539.26220703125	2	539.765517	1077.51648	0.20896	0.00011279	-1.1847	-0.00063944	-0.9757	-0.00052665	539.7651676493773	17.322	0.31221	17.403	17.117	17.43	0.081358					7	5	2	0	0	0	0.33998	1	5818	5818		7.609	0	1	2921200	+		12439	12938	7288	7331	11957	11957					-0.019176095283455652
GPANWDEY	8	Unmodified	_GPANWDEY_					0	0	0		ENST00000278025.8_1_10:135168706-135168871:-|nuORF	ENST00000278025.8_1_10:135168706-135168871:-|nuORF	ENST00000278025.8_1_10:135168706-135168871:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	951.3868408203125	1	951.384288	950.377011	0.81774	0.00077798	1.1805	0.0011231	1.9982	0.0019011	951.3856318463874	22.307	0.15528	21.922	21.843	21.999	-0.3852					4	2	2	0	0	0	0.79834	1	7926	7926		11.64	0.81637	1	14507000			12440	6933	7289	7332	11958	11958					-0.10016230821383942
GPAPDPAG	8	Unmodified	_GPAPDPAG_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MULTI-MSMS	HCT116MG_D190212_S3	3	681.3204345703125	1	681.320231	680.312954	0.74731	0.00050916	-0.33284	-0.00022677	0.41446	0.00028238	681.3198465176291	17.947	2.1338	18.023	16.54	18.674	0.076334					74	40	2	0	0	0	0.32897	1	5594	5594		56.541	0	1	8871100	+		12441	13929	7290	7333	11959	11959					-0.03998966187668884
GPAPDPAGPA	10	Unmodified	_GPAPDPAGPA_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MSMS	HCT116MG_D190212_S2	2	425.2084045410156	2	425.208692	848.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.738	1	20.359	19.859	20.859	-0.37949								0	0	0	0.53351	1	7262	7262		46.021	11.619	1		+		12442	13929	7291	7334	11960	11960					-0.027433365791011965
GPAPDPAGPA	10	Unmodified	_GPAPDPAGPA_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MULTI-MSMS	HCT116MG_D190212_S3	3	425.2086181640625	2	425.208692	848.402832	0.0064264	2.7325E-06	-0.010406	-4.4245E-06	-0.0039792	-1.692E-06	425.20855633501253	20.393	1.2497	20.442	19.686	20.936	0.048107					40	23	2	0	0	0	0.2521	2	7094	6853;7094		54.774	16.8	1	9854600	+		12443	13929	7291	7334	11961;11962	11962					-0.027433365791011965
GPAPDPAGPA	10	Unmodified	_GPAPDPAGPA_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MULTI-MSMS	HCT116MG_D190212_S3	3	849.4103393554688	1	849.410108	848.402832	0.61208	0.00051991	0.083095	7.0582E-05	0.69518	0.00059049	849.4103778748656	20.393	1.1456	20.442	19.791	20.936	0.048107					26	21	2	0	0	0	0.17848	1	7004	7004		61.357	6.5839	1	3175200	+		12444	13929	7291	7334	11963	11963					-0.027433365791011965
GPAPDPAGPA	10	Unmodified	_GPAPDPAGPA_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MULTI-MSMS	HCT116MG_D190212_S4	4	425.2086181640625	2	425.208692	848.402832	0.19811	8.4237E-05	-0.025012	-1.0635E-05	0.1731	7.3602E-05	425.2085310566309	20.627	1.2468	20.426	19.573	20.819	-0.20133					37	23	2	0	0	0	0.14986	2	7117	6882;7117		64.236	11.47	1	8566400	+		12445	13929	7291	7334	11964;11965	11965					-0.027433365791011965
GPAPDPAGPA	10	Unmodified	_GPAPDPAGPA_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MULTI-MSMS	HCT116MG_D190212_S4	4	849.4099731445312	1	849.410108	848.402832	0.70017	0.00059473	-0.078002	-6.6256E-05	0.62217	0.00052847	849.4102001082359	20.666	1.0392	20.465	19.729	20.768	-0.20133					26	19	2	0	0	0	0.28012	2	6920	6920;7161		52.268	12.311	1	2884500	+		12446	13929	7291	7334	11966;11967	11966					-0.027433365791011965
GPAPDPAGPA	10	Unmodified	_GPAPDPAGPA_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	425.208692	848.402832	0.0064264	2.7325E-06	-0.010406	-4.4245E-06	-0.0039792	-1.692E-06	425.20855633501253	20.393	1.2497	20.442	19.686	20.936	0.048107	0.0079332	6.6443E-06	NaN	64.236	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9854600	+		12447	13929	7291	7334							-0.027433365791011965
GPAPDPAGPA	10	Unmodified	_GPAPDPAGPA_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	849.410108	848.402832	0.70017	0.00059473	-0.078002	-6.6256E-05	0.62217	0.00052847	849.4102001082359	20.666	1.0392	20.465	19.729	20.768	-0.20133	0.011642	-2.8545E-05	NaN	61.357	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2884500	+		12448	13929	7291	7334							-0.027433365791011965
GPAPDPAGPA	10	Unmodified	_GPAPDPAGPA_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	425.208692	848.402832	0.19811	8.4237E-05	-0.025012	-1.0635E-05	0.1731	7.3602E-05	425.2085310566309	20.627	1.2468	20.426	19.573	20.819	-0.20133	-0.0079332	-5.7776E-06	NaN	64.236	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8566400	+		12449	13929	7291	7334							-0.027433365791011965
GPAPLAKN	8	Unmodified	_GPAPLAKN_					0	0	0			REV__ENSG00000198075|ENST00000272452|SULT1C4	REV__ENSG00000198075|ENST00000272452|SULT1C4	MSMS	HCT116MG_D190212_S4	4	384.22283935546875	2	384.224146	766.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.457	1	28.126	27.626	28.626	-0.33138								0	0	0	0.8837	1	10234	10234		11.114	1.767	1		+		12450	14106	7292	7335	11968	11968					0.041178615257990714
GPAPSSDQPPP	11	Unmodified	_GPAPSSDQPPP_					0	0	0			REV__nc|ENSG00000089639|Q9P107-2|GMIP	REV__nc|ENSG00000089639|Q9P107-2|GMIP	MSMS	HCT116MG_D190212_S4	4	525.2494506835938	2	525.248546	1048.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.81	1	18.63	18.13	19.13	-0.18052								0	0	0	0.93552	1	6339	6339		13.906	0	1		+		12451	10974	7293	7336	11969	11969					-0.03976314695751171
GPAPSSPSGQP	11	Unmodified	_GPAPSSPSGQP_					0	0	0			REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MULTI-MSMS	HCT116MG_D190212_S4	4	491.235595703125	2	491.235439	980.456324	-0.54124	-0.00026588	0.016334	8.0238E-06	-0.52491	-0.00025785	491.23562835879164	16.208	0.3489	16.044	15.875	16.224	-0.16364					9	6	2	0	0	0	0.59379	1	5315	5315		36.127	8.4982	1	739470	+		12452	13566	7294	7337	11970	11970					-0.03468583867220332
GPAPSSPSGQP	11	Unmodified	_GPAPSSPSGQP_					0	0	0			REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	491.235439	980.456324	0.069803	3.429E-05	-0.99302	-0.00048781	-0.92322	-0.00045352	491.23492968850593	16.178	0.25994	16.263	16.081	16.341	0.085424	0.10934	-0.00017648	NaN	36.127	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1652300	+		12453	13566	7294	7337							-0.03468583867220332
GPAPSSPSGQP	11	Unmodified	_GPAPSSPSGQP_					0	0	0			REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	491.235439	980.456324	-0.54124	-0.00026588	0.016334	8.0238E-06	-0.52491	-0.00025785	491.23562835879164	16.208	0.3489	16.044	15.875	16.224	-0.16364	-0.10934	0.00081518	NaN	36.127	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	739470	+		12454	13566	7294	7337							-0.03468583867220332
GPAPSSQTA	9	Unmodified	_GPAPSSQTA_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MSMS	HCT116MG_D190212_S4	4	408.197998046875	2	408.198325	814.382096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.236	1	18.061	17.561	18.561	-0.17501								0	0	0	0.69272	1	6107	6107		19.439	2.4967	1		+		12455	11082	7295	7338	11971	11971					-0.03251926958751028
GPAQEEPVSYR	11	Unmodified	_GPAQEEPVSYR_					0	0	0			REV__ENSG00000243232|ENST00000289269|PCDHAC2	REV__ENSG00000243232|ENST00000289269|PCDHAC2	MULTI-MSMS	HCT116MG_D190212_S3	3	617.3009033203125	2	616.798934	1231.58332	0.2841	0.00017523	0.4155	0.00025628	0.6996	0.00043151	616.7989148911413	18.125	0.78098	18.201	17.737	18.518	0.076334					21	14	2	0	0	0	0.73696	1	6181	6181		8.1555	0.54658	1	2006000	+		12456	14361	7296	7339	11972	11972					-0.023212827129100333
GPAQEEPVSYR	11	Unmodified	_GPAQEEPVSYR_					0	0	0			REV__ENSG00000243232|ENST00000289269|PCDHAC2	REV__ENSG00000243232|ENST00000289269|PCDHAC2	MULTI-MSMS	HCT116MG_D190212_S4	4	616.7988891601562	2	616.798934	1231.58332	0.47437	0.00029259	-0.36589	-0.00022568	0.10848	6.691E-05	616.7984861187692	18.382	0.7774	18.202	17.734	18.511	-0.18052					21	14	2	0	0	0	0.73696	2	6087	6087;6105		8.1555	3.6267	1	1491600	+		12457	14361	7296	7339	11973;11974	11973					-0.023212827129100333
GPAQQVWHMYY	11	Unmodified	_GPAQQVWHMYY_					0	0	0			REV__nc|ENSG00000281990|A0A0G2JMI3|IGHV1-69-2	REV__nc|ENSG00000281990|A0A0G2JMI3|IGHV1-69-2	MSMS	HCT116MG_D190212_S3	3	690.3140258789062	2	690.313697	1378.61284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.735	1	26.586	26.086	27.086	-0.14924								0	0	0	0.91433	1	9605	9605		18.146	7.3468	1		+		12458	17320	7297	7340	11975	11975					-0.06132041968407975
GPAQQVWHMYY	11	Unmodified	_GPAQQVWHMYY_					0	0	0			REV__nc|ENSG00000281990|A0A0G2JMI3|IGHV1-69-2	REV__nc|ENSG00000281990|A0A0G2JMI3|IGHV1-69-2	MSMS	HCT116MG_D190212_S4	4	690.3145751953125	2	690.313697	1378.61284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.551	1	26.25	25.75	26.75	-0.30087								0	0	0	0.8787	1	9464	9464		22.736	5.2936	1		+		12459	17320	7297	7340	11976	11976					-0.06132041968407975
GPAQRPGCGQH	11	Unmodified	_GPAQRPGCGQH_					0	0	0		ENST00000397621.5_1_16:746860-755534:-|nuORF	ENST00000397621.5_1_16:746860-755534:-|nuORF	ENST00000397621.5_1_16:746860-755534:-|nuORF	MSMS	HCT116MG_D190212_S3	3	554.2301025390625	2	554.259256	1106.50396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.121	1	25.015	24.515	25.515	-0.10618								0	0	0	0.94284	1	8954	8954		10.074	0.6908	1				12460	7668	7298	7341	11977	11977					-0.04503208148025806
GPAREEEQ	8	Unmodified	_GPAREEEQ_					0	0	0			REV__ENST00000496221.1_1_9:131021229-131021523:-|nuORF	REV__ENST00000496221.1_1_9:131021229-131021523:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	458.75823974609375	2	458.211963	914.409374	0.089233	4.0887E-05	0.35723	0.00016369	0.44646	0.00020458	458.2120123185774	16.363	0.209	16.022	15.891	16.1	-0.34183					5	3	2	0	0	0	0.23993	1	5470	5470		26.884	0	1	5125200	+		12461	16088	7299	7342	11978	11978					-0.05125443418376108
GPARLPAPGPR	11	Unmodified	_GPARLPAPGPR_					0	0	0		ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	MULTI-SECPEP	HCT116MG_D190212_S3	3	363.20062255859375	3	363.548964	1087.62506	-0.29621	-0.00010769	0.32144	0.00011686	0.025234	9.1737E-06	363.54904768115955	17.114	0.31208	17.199	17.068	17.381	0.084467					6	5	2	0	0	0	0.35538	1	5780	5780		4.4062	3.0765	1	2228500			12462	2970	7300	7343	11979	11979					0.08475362556941946
GPARPHPPP	9	Unmodified	_GPARPHPPP_					0	0	0			REV__ENST00000339594.8_1_7:72936226-72936493:-|nuORF	REV__ENST00000339594.8_1_7:72936226-72936493:-|nuORF	MSMS	HCT116MG_D190212_S3	3	463.2544860839844	2	463.253769	924.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.821	1	28.599	28.099	29.099	-0.22195								0	0	0	0.7676	1	10446	10446		9.3474	2.9933	1		+		12463	14964	7301	7344	11980	11980					0.02771757539983355
GPASDTQWEW	10	Unmodified	_GPASDTQWEW_					0	0	0			REV__ENST00000430998.6_1_10:4699836-4701809:-|nuORF	REV__ENST00000430998.6_1_10:4699836-4701809:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	588.7520141601562	2	588.751453	1175.48835	0.59591	0.00035084	0.63545	0.00037412	1.2314	0.00072496	588.7516094420112	20.747	0.2101	20.368	20.236	20.446	-0.37949					5	3	2	0	0	0	0.86339	1	7293	7293		6.7232	0	1	10707000	+		12464	15583	7302	7345	11981	11981					-0.09237216184101271
GPASFQRR	8	Unmodified	_GPASFQRR_					0	0	0		ENST00000591444.1_3_19:38145628-38145952:-|nuORF	ENST00000591444.1_3_19:38145628-38145952:-|nuORF	ENST00000591444.1_3_19:38145628-38145952:-|nuORF	MSMS	HCT116MG_D190212_S2	2	459.7480773925781	2	459.74885	917.483148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.604	1	15.277	14.777	15.777	-0.32684								0	0	0	0.8837	1	5196	5196		14.582	2.0501	1				12465	9034	7303	7346	11982	11982					0.0211056953461366
GPASKLLQP	9	Unmodified	_GPASKLLQP_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;ENST00000506744.1_1_5:65372690-65374355:+|nuORF	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MSMS	HCT116MG_D190212_S3	3	455.7713623046875	2	455.77146	909.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.407	1	16.493	15.993	16.993	0.085424								0	0	0	0.76641	1	5442	5442		13.508	4.1604	1				12466	2362	7304	7347	11983	11983					0.06998375277146351
GPASNRTG	8	Unmodified	_GPASNRTG_					0	0	0		nc|ENSG00000150672|Q15700-4|DLG2	nc|ENSG00000150672|Q15700-4|DLG2	nc|ENSG00000150672|Q15700-4|DLG2	MSMS	HCT116MG_D190212_S4	4	380.1912841796875	2	380.190834	758.367115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.525	1	22.293	21.793	22.793	-0.2323								0	0	0	0.8837	1	7840	7840		6.3541	0	1				12467	9499	7305	7348	11984	11984					-0.021733740360787124
GPASPPEEDP	10	Unmodified	_GPASPPEEDP_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MSMS	HCT116MG_D190212_S4	4	498.233642578125	2	498.219454	994.424355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.751	1	29.402	28.902	29.902	-0.34921								0	0	0	0.91906	1	10757	10757		11.64	0.81637	1				12468	6097	7306	7349	11985	11985					-0.07307996341046419
GPASQYPYTGY	11	Unmodified	_GPASQYPYTGY_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MSMS	HCT116MG_D190212_S3	3	602.2692260742188	2	602.269478	1202.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.048	1	20.097	19.597	20.597	0.048107								0	0	0	0.9414	1	6911	6911		10.824	1.4408	1				12469	1236	7307	7350	11986	11986					-0.0687575900722095
GPASRCHQERP	11	Unmodified	_GPASRCHQERP_					0	0	0		ENSG00000113196|ENST00000231121|HAND1	ENSG00000113196|ENST00000231121|HAND1	ENSG00000113196|ENST00000231121|HAND1	MSMS	HCT116MG_D190212_S2	2	619.2937622070312	2	619.29637	1236.57819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.959	1	17.603	17.103	18.103	-0.35647								0	0	0	0.93717	1	6144	6144		13.042	2.243	1				12470	2372	7308	7351	11987	11987					-0.030638650565151693
GPASSAVPLSP	11	Unmodified	_GPASSAVPLSP_					0	0	0		nc|ENSG00000103855|Q5ZPR3-3|CD276;ENST00000318443.9_1_15:74005926-74006103:+|nuORF	nc|ENSG00000103855|Q5ZPR3-3|CD276	nc|ENSG00000103855|Q5ZPR3-3|CD276	MSMS	HCT116MG_D190212_S3	3	491.8965759277344	2	491.763832	981.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.097	1	21.131	20.631	21.631	0.034473								0	0	0	0.8787	1	7334	7334		22.736	2.2827	1				12471	9412	7309	7352	11988	11988					0.02161463689287757
GPASVYAEGAP	11	Unmodified	_GPASVYAEGAP_					0	0	0		tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	509.7451477050781	2	509.745639	1017.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.194	1	16.031	15.531	16.531	-0.16364								0	0	0	0.94924	1	5282	5282		6.7232	0.51738	1				12472	18648	7310	7353	11989	11989					-0.03131413207427158
GPASYRRPPS	10	Unmodified	_GPASYRRPPS_					0	0	0		nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	MULTI-MSMS	HCT116MG_D190212_S4	4	544.2860717773438	2	544.285797	1086.55704	0.51743	0.00028163	0.03881	2.1124E-05	0.55624	0.00030275	544.2857986234362	21.24	0.31173	21.031	20.811	21.123	-0.20959					8	5	2	0	0	0	0.75427	1	7356	7356		15.847	1.9411	1	2803900			12473	3867	7311	7354	11990	11990					0.01722492906287698
GPATAEPHEP	10	Unmodified	_GPATAEPHEP_					0	0	0		SLC16A10|p.E66Rfs*8|1|0.58|ENSG00000112394|chr6:111087942-111087942|C/-|frameshift_variant;SLC16A10|p.I282Ffs*9|2|0.22|ENSG00000112394|chr6:111177560-111177560|A/-|frameshift_variant;SLC16A10|p.N327Ifs*30|1|0.39|ENSG00000112394|chr6:111206623-111206623|A/-|frameshift_variant;SLC16A10|p.F367Sfs*5|1|0.32|ENSG00000112394|chr6:111218823-111218823|T/-|frameshift_variant;SLC16A10|p.A384Pfs*23|1|0.04|ENSG00000112394|chr6:111218874-111218874|G/-|frameshift_variant;ENSG00000112394|ENST00000368851|SLC16A10	SLC16A10|p.E66Rfs*8|1|0.58|ENSG00000112394|chr6:111087942-111087942|C/-|frameshift_variant	SLC16A10|p.E66Rfs*8|1|0.58|ENSG00000112394|chr6:111087942-111087942|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	503.1078796386719	2	503.235439	1004.45632	0.29071	0.0001463	0.38686	0.00019468	0.67758	0.00034098	503.2356205710686	28.109	0.20806	27.778	27.7	27.908	-0.33138					5	3	2	0	0	0	0.30812	1	10121	10121		1.6526	0	1	2852200			12474	2347	7312	7355	11991	11991					-0.045725838672410646
GPATDSRWIE	10	Unmodified	_GPATDSRWIE_					0	0	0			REV__ENST00000415574.6_1_2:132258965-132266117:+|nuORF	REV__ENST00000415574.6_1_2:132258965-132266117:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	566.2755126953125	2	566.275095	1130.53564	0.38645	0.00021884	0.067896	3.8448E-05	0.45435	0.00025729	566.2752470299122	22.357	0.67514	22.13	21.676	22.351	-0.22777					23	12	2	0	0	0	0.65652	1	7713	7713		24.021	0.23079	1	5672700	+		12475	15469	7313	7356	11992	11992					-0.024409369130808045
GPATEQPPGAP	11	Unmodified	_GPATEQPPGAP_					0	0	0		ENSG00000205307|ENST00000622764|SAP25	ENSG00000205307|ENST00000622764|SAP25	ENSG00000205307|ENST00000622764|SAP25	MSMS	HCT116MG_D190212_S3	3	511.2513732910156	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.288	1	24.226	23.726	24.726	-0.061449								0	0	0	0.93181	1	8618	8618		15.847	1.0089	1				12476	6377	7314	7357	11993	11993					-0.021800108331490264
GPATEQPPGAP	11	Unmodified	_GPATEQPPGAP_					0	0	0		ENSG00000205307|ENST00000622764|SAP25	ENSG00000205307|ENST00000622764|SAP25	ENSG00000205307|ENST00000622764|SAP25	MSMS	HCT116MG_D190212_S4	4	511.25140380859375	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.994	1	19.8	19.3	20.3	-0.19367								0	0	0	0.88801	1	6817	6817		21.537	5.6898	1				12477	6377	7314	7357	11994	11994					-0.021800108331490264
GPATEQPPGAP	11	Unmodified	_GPATEQPPGAP_					0	0	0		ENSG00000205307|ENST00000622764|SAP25	ENSG00000205307|ENST00000622764|SAP25	ENSG00000205307|ENST00000622764|SAP25	MSMS	HCT116MG_D190212_S4	4	511.2511291503906	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.244	1	25.944	25.444	26.444	-0.29996								0	0	0	0.88639	1	9340	9340		21.747	2.3076	1				12478	6377	7314	7357	11995	11995					-0.021800108331490264
GPATPAPNSAP	11	Unmodified	_GPATPAPNSAP_					0	0	0			REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	MSMS	HCT116MG_D190212_S3	3	490.2462158203125	2	490.245806	978.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.898	1	23.836	23.336	24.336	-0.061449								0	0	0	0.86874	1	8460	8460		24.021	3.5669	1		+		12479	10682	7315	7358	11996	11996					-0.013039934875791914
GPATPAPNSAP	11	Unmodified	_GPATPAPNSAP_					0	0	0			REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	MULTI-MSMS	HCT116MG_D190212_S4	4	490.2461242675781	2	490.245806	978.47706	0.10422	5.1092E-05	-0.19079	-9.3535E-05	-0.086575	-4.2443E-05	490.24600154678285	23.961	0.31198	23.703	23.573	23.885	-0.25816					7	5	2	0	0	0	0.70691	1	8432	8432		19.257	7.6167	1	2388600	+		12480	10682	7315	7358	11997	11997					-0.013039934875791914
GPATPRGPA	9	Unmodified	_GPATPRGPA_					0	0	0			REV__ENSG00000137414|ENST00000259963|FAM8A1	REV__ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	HCT116MG_D190212_S4	4	412.224853515625	2	412.224677	822.434801	0.27967	0.00011529	0.65464	0.00026986	0.93431	0.00038515	412.22478431602667	25.435	0.20805	25.156	25.058	25.266	-0.27958					5	3	2	0	0	0	0.47829	1	9040	9040		18.135	0	1	1338600	+		12481	12174	7316	7359	11998	11998					0.016480758947068352
GPATPRGPA	9	Unmodified	_GPATPRGPA_					0	0	0			REV__ENSG00000137414|ENST00000259963|FAM8A1	REV__ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	412.224677	822.434801	0.13719	5.6554E-05	0.029132	1.2009E-05	0.16633	6.8564E-05	412.2248080074362	24.914	0.20812	24.831	24.705	24.913	-0.083694	-0.16257	-0.00020472	NaN	18.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	908940	+		12482	12174	7316	7359							0.016480758947068352
GPATPRGPA	9	Unmodified	_GPATPRGPA_					0	0	0			REV__ENSG00000137414|ENST00000259963|FAM8A1	REV__ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	412.224677	822.434801	0.27967	0.00011529	0.65464	0.00026986	0.93431	0.00038515	412.22478431602667	25.435	0.20805	25.156	25.058	25.266	-0.27958	0.16257	0.00031098	NaN	18.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1338600	+		12483	12174	7316	7359							0.016480758947068352
GPATPSPAAA	10	Unmodified	_GPATPSPAAA_					0	0	0			REV__CERK|p.K477Rfs*74|2|0.3|ENSG00000100422|chr22:46690105-46690105|C/-|frameshift_variant	REV__CERK|p.K477Rfs*74|2|0.3|ENSG00000100422|chr22:46690105-46690105|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	839.426513671875	1	839.425758	838.418482	0.89297	0.00074958	0.33297	0.0002795	1.2259	0.0010291	839.4260233217232	24.465	0.51868	24.196	23.926	24.445	-0.26881					11	9	2	0	0	0	0.64004	1	8667	8667		25.399	2.2509	1	1138400	+		12484	10164	7317	7360	11999	11999					-0.00719050062059523
GPATRSPTRTP	11	Unmodified	_GPATRSPTRTP_					0	0	0			REV__ENSG00000169221|ENST00000409939|TBC1D10B	REV__ENSG00000169221|ENST00000409939|TBC1D10B	MSMS	HCT116MG_D190212_S4	4	570.8097534179688	2	570.809636	1139.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.687	1	15.525	15.025	16.025	-0.16173								0	0	0	0.94538	1	5077	5077		8.7454	3.0136	1		+		12485	13232	7318	7361	12000	12000					0.04050147106477198
GPATSYTRA	9	Unmodified	_GPATSYTRA_					0	0	0			REV__SP140|p.F779Lfs*17|1|0.23|ENSG00000079263|chr2:230311202-230311202|T/-|frameshift_variant	REV__SP140|p.F779Lfs*17|1|0.23|ENSG00000079263|chr2:230311202-230311202|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	462.1466369628906	2	462.232699	922.450845	0.048835	2.2573E-05	0.2961	0.00013687	0.34494	0.00015944	462.2327018758404	20.048	1.6538	19.854	18.706	20.36	-0.19367					61	31	3	0	0	0	0.55919	1	6991	6991		13.508	1.8676	1	9536000	+		12486	10848	7319	7362	12001	12001					-0.013482626590644031
GPAVGVTGPP	10	Unmodified	_GPAVGVTGPP_					0	0	0			REV__ENST00000526402.1_1_11:43543828-43544716:+|nuORF	REV__ENST00000526402.1_1_11:43543828-43544716:+|nuORF	MSMS	HCT116MG_D190212_S4	4	426.2332763671875	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.53	1	26.229	25.729	26.729	-0.30087								0	0	0	0.91507	1	9455	9455		12.532	3.1841	1		+		12487	16276	7320	7363	12002	12002					0.0236582683467077
GPAVPGEGDPQ	11	Unmodified	_GPAVPGEGDPQ_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB;REV__SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant	REV__SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	512.2402954101562	2	512.240721	1022.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.475	1	18.294	17.794	18.794	-0.18052								0	0	0	0.93552	1	6203	6203		13.906	0	1		+		12488	13673;17499	7321	7364	12003	12003					-0.043446012128015354
GPAVQPSSQP	10	Unmodified	_GPAVQPSSQP_					0	0	0			REV__ENST00000531360.5_1_11:118992333-119002261:+|nuORF	REV__ENST00000531360.5_1_11:118992333-119002261:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	484.7379455566406	2	484.245806	966.47706	0.14711	7.1237E-05	-0.079931	-3.8706E-05	0.067178	3.2531E-05	484.24578895945797	18.688	0.36467	18.688	18.402	18.766	0					9	6	2	0	0	0	0.27462	1	6324	6324		18.146	7.9958	1	934700	+		12489	16317	7322	7365	12004	12004					-0.007519934875631407
GPAVQRLQDPL	11	Unmodified	_GPAVQRLQDPL_					0	0	0		ENST00000525616.1_1_19:50187319-50188102:+|nuORF;ENST00000454376.6_1_19:50187319-50188233:+|nuORF	ENST00000525616.1_1_19:50187319-50188102:+|nuORF	ENST00000525616.1_1_19:50187319-50188102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	597.33544921875	2	597.335487	1192.65642	0.57802	0.00034527	-0.93074	-0.00055596	-0.35272	-0.00021069	597.3352491931213	21.518	0.62224	21.133	20.649	21.271	-0.38468					16	11	3	0	0	0	0.71887	1	7598	7598		14.838	3.198	1	16332000			12490	8012	7323	7366	12005	12005					0.06779890800362409
GPAWAERP	8	Unmodified	_GPAWAERP_					0	0	0			REV__ENST00000486831.5_1_3:138153627-138153909:+|nuORF	REV__ENST00000486831.5_1_3:138153627-138153909:+|nuORF	MSMS	HCT116MG_D190212_S1	1	442.22613525390625	2	442.224677	882.434801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.928	1	18.928	18.428	19.428	0								0	0	0	0.8837	1	6535	6535		10.183	0.83596	1		+		12491	15998	7324	7367	12006	12006					-0.011119241052938378
GPAWHGRQAQS	11	Unmodified	_GPAWHGRQAQS_					0	0	0			REV__ENST00000606089.1_1_5:133340855-133341212:+|nuORF	REV__ENST00000606089.1_1_5:133340855-133341212:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	597.7911376953125	2	597.791778	1193.569	0.48226	0.00028829	-0.9442	-0.00056443	-0.46194	-0.00027614	597.7909968982442	16.614	0.57213	16.7	16.341	16.913	0.085423					17	10	2	0	0	0	0.74084	1	5452	5452		6.7232	0.51738	1	3296000	+		12492	16768	7325	7368	12007	12007					-0.020038903505337657
GPAWRQEQPQP	11	Unmodified	_GPAWRQEQPQP_					0	0	0			REV__ENST00000542790.1_1_12:122734385-122735751:-|nuORF	REV__ENST00000542790.1_1_12:122734385-122735751:-|nuORF	MSMS	HCT116MG_D190212_S4	4	647.3201293945312	2	647.320368	1292.62618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.435	1	35.049	34.549	35.549	-0.38606								0	0	0	0.93552	1	12978	12978		13.906	5.7505	1		+		12493	16380	7326	7369	12008	12008					-0.008424678647998007
GPAWSPLDGP	10	Unmodified	_GPAWSPLDGP_					0	0	0		ENST00000428369.5_3_5:131562901-131563021:-|nuORF	ENST00000428369.5_3_5:131562901-131563021:-|nuORF	ENST00000428369.5_3_5:131562901-131563021:-|nuORF	MSMS	HCT116MG_D190212_S1	1	498.7413024902344	2	498.742899	995.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.388	1	20.388	19.888	20.888	0								0	0	0	0.89194	1	7123	7123		16.942	5.302	1				12494	7830	7327	7370	12009	12009					-0.026670919992398012
GPAWWAPSLP	10	Unmodified	_GPAWWAPSLP_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MSMS	HCT116MG_D190212_S4	4	541.2760009765625	2	541.276909	1080.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.817	1	32.438	31.938	32.938	-0.37924								0	0	0	0.91507	1	11968	11968		12.532	0	1				12495	3191	7328	7371	12010	12010					0.0022177765142714634
GPAYAQCVR	9	Unmodified	_GPAYAQCVR_					0	0	0			REV__ENST00000281141.8_1_10:12238056-12238125:+|nuORF	REV__ENST00000281141.8_1_10:12238056-12238125:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	964.4690551757812	1	964.466912	963.459635	0.60114	0.00057978	1.2497	0.0012053	1.8509	0.0017851	964.4688640828663	40.169	0.2084	39.79	39.732	39.941	-0.37936					8	4	2	0	0	0	0.55919	1	14763	14763		13.508	1.8676	1	1927100	+		12496	14715	7329	7372	12011	12011					-0.023556122942295588
GPCAHCAA	8	Unmodified	_GPCAHCAA_					0	0	0		nc|ENSG00000106009|Q6PJG6-3|BRAT1	nc|ENSG00000106009|Q6PJG6-3|BRAT1	nc|ENSG00000106009|Q6PJG6-3|BRAT1	MSMS	HCT116MG_D190212_S3	3	365.1441345214844	2	365.143984	728.273414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.833	1	29.597	29.097	30.097	-0.23655								0	0	0	0.8837	1	10851	10851		0.79363	0	1				12497	9415	7330	7373	12012	12012					-0.10159132734395371
GPCENWKQH	9	Unmodified	_GPCENWKQH_					0	0	0		nc|ENSG00000111291|Q9NZD1-2|GPRC5D;nc|ENSG00000111291|Q9NZD1-3|GPRC5D;ENSG00000111291|ENST00000228887|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	MULTI-MSMS	HCT116MG_D190212_S4	4	550.2177734375	2	549.742908	1097.47126	0.47959	0.00026365	3.0427	0.0016727	3.5223	0.0019364	549.7446002205015	18.562	0.20797	18.381	18.251	18.459	-0.18052					5	3	2	0	0	0	0.64512	1	6200	6200		8.5933	2.3875	1	1361500			12498	2283	7331	7374	12013	12013					-0.07357415270894307
GPCENWKQH	9	Unmodified	_GPCENWKQH_					0	0	0		nc|ENSG00000111291|Q9NZD1-2|GPRC5D;nc|ENSG00000111291|Q9NZD1-3|GPRC5D;ENSG00000111291|ENST00000228887|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	549.742908	1097.47126	0.35385	0.00019453	3.6322	0.0019968	3.9861	0.0021913	549.7449651844875	18.207	0.15626	18.283	18.153	18.309	0.076334	-0.049249	0.0002203	NaN	8.5933	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2167900			12499	2283	7331	7374							-0.07357415270894307
GPCHHLKMFYC	11	Unmodified	_GPCHHLKMFYC_					0	0	0			REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	668.795654296875	2	668.293396	1334.57224	0.67961	0.00045418	0.30202	0.00020184	0.98163	0.00065602	668.2935372964797	20.873	0.77892	20.663	20.24	21.019	-0.20959					19	14	2	0	0	0	0.74191	1	7168	7168		6.2058	0.9089	1	1797200	+		12500	16252	7332	7375	12014	12014					-0.0816642288402818
GPCPCHPV	8	Unmodified	_GPCPCHPV_					0	0	0			REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	MSMS	HCT116MG_D190212_S3	3	405.1747741699219	2	405.175284	808.336015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.116	1	12.171	11.671	12.671	0.055045								0	0	0	0.8837	1	3756	3756		0.79363	0	1		+		12501	15315	7333	7376	12015	12015					-0.07581986666195917
GPDEAPGPGAA	11	Unmodified	_GPDEAPGPGAA_					0	0	0			REV__ENST00000394412.7_1_15:90185548-90188335:-|nuORF	REV__ENST00000394412.7_1_15:90185548-90188335:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	469.2644958496094	2	469.714339	937.414125	0.34666	0.00016283	-0.33635	-0.00015799	0.01031	4.8427E-06	469.714190461902	20.29	0.52166	20.29	20.07	20.592	0					15	9	2	0	0	0	0.32355	1	7088	7088		29.082	0	1	2555500	+		12502	15337	7334	7377	12016	12016					-0.05708559275615244
GPDEAPGPGAA	11	Unmodified	_GPDEAPGPGAA_					0	0	0			REV__ENST00000394412.7_1_15:90185548-90188335:-|nuORF	REV__ENST00000394412.7_1_15:90185548-90188335:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	469.71429443359375	2	469.714339	937.414125	0.22005	0.00010336	-0.038405	-1.804E-05	0.18164	8.532E-05	469.7142171679035	20.674	0.84117	20.294	19.761	20.602	-0.37949					33	15	3	0	0	0	0.45729	1	7175	7175		49.933	0	1	14798000	+		12503	15337	7334	7377	12017	12017					-0.05708559275615244
GPDEAPGPGAA	11	Unmodified	_GPDEAPGPGAA_					0	0	0			REV__ENST00000394412.7_1_15:90185548-90188335:-|nuORF	REV__ENST00000394412.7_1_15:90185548-90188335:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	469.7143859863281	2	469.714339	937.414125	0.12344	5.7983E-05	0.19062	8.9536E-05	0.31406	0.00014752	469.71427476094595	20.329	1.2498	20.377	19.582	20.832	0.048107					59	23	3	0	0	0	0.26439	1	7073	7073		68.081	9.4019	1	27240000	+		12504	15337	7334	7377	12018	12018					-0.05708559275615244
GPDEAPGPGAA	11	Unmodified	_GPDEAPGPGAA_					0	0	0			REV__ENST00000394412.7_1_15:90185548-90188335:-|nuORF	REV__ENST00000394412.7_1_15:90185548-90188335:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	469.71435546875	2	469.714339	937.414125	0.1388	6.5196E-05	0.11292	5.3041E-05	0.25172	0.00011824	469.7142482204321	20.625	1.1906	20.423	19.525	20.716	-0.20133					59	22	4	0	0	0	0.1225	1	6992	6992		85.272	17.191	1	25880000	+		12505	15337	7334	7377	12019	12019					-0.05708559275615244
GPDEAWTPP	9	Unmodified	_GPDEAWTPP_					0	0	0			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MSMS	HCT116MG_D190212_S2	2	485.2177429199219	2	485.219257	968.423961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.691	1	16.349	15.849	16.849	-0.34183								0	0	0	0.76641	1	5633	5633		13.508	0.97634	1		+		12506	10525	7335	7378	12020	12020					-0.06151371270243544
GPDEGWEP	8	Unmodified	_GPDEGWEP_					0	0	0			REV__ENSG00000177354|ENST00000374144|C10orf71	REV__ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	HCT116MG_D190212_S4	4	443.24969482421875	2	443.682507	885.350462	0.30266	0.00013429	1.153	0.00051159	1.4557	0.00064587	443.6829413456266	21.952	0.20787	21.729	21.577	21.785	-0.22231					5	3	2	0	0	0	0.32917	1	7573	7573		6.3541	0	1	1048800	+		12507	13567	7336	7379	12021	12021					-0.09679919712709761
GPDGAAPALPK	11	Unmodified	_GPDGAAPALPK_					0	0	0			REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF	REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF	MSMS	HCT116MG_D190212_S4	4	497.2711181640625	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.821	1	27.5	27	28	-0.32157								0	0	0	0.94538	1	9977	9977		8.7454	0.83525	1		+		12508	15917	7337	7380	12022	12022					0.03253169926188093
GPDGADEH	8	Unmodified	_GPDGADEH_					0	0	0			REV__ENST00000315150.9_1_3:128813878-128840609:-|nuORF	REV__ENST00000315150.9_1_3:128813878-128840609:-|nuORF	MSMS	HCT116MG_D190212_S3	3	399.15496826171875	2	399.156657	796.298761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.404	1	36.103	35.603	36.603	-0.30091								0	0	0	0.8837	1	13450	13450		5.7604	0	1		+		12509	14859	7338	7381	12023	12023					-0.10753663406615033
GPDGPYPV	8	Unmodified	_GPDGPYPV_					0	0	0			REV__KPRP|p.L513P|1|0.26|ENSG00000203786|chr1:152761126-152761126|T/C|missense_variant	REV__KPRP|p.L513P|1|0.26|ENSG00000203786|chr1:152761126-152761126|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	801.37841796875	1	801.377746	800.370469	1.0374	0.00083137	-0.10472	-8.3922E-05	0.9327	0.00074745	801.3774721713246	32.767	0.26053	32.482	32.352	32.612	-0.28511					7	4	2	0	0	0	0.77285	1	12050	12050		14.582	0	1	5195800	+		12510	16934	7339	7382	12024	12024					-0.03770123982087625
GPDGSSGQP	9	Unmodified	_GPDGSSGQP_					0	0	0			REV__COLEC12|p.G581Rfs*17|1|0.2|ENSG00000158270|chr18:334817-334818|-/G|frameshift_variant	REV__COLEC12|p.G581Rfs*17|1|0.2|ENSG00000158270|chr18:334817-334818|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	401.174072265625	2	401.172307	800.330061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.95	1	30.683	30.183	31.183	-0.26704								0	0	0	0.76781	1	11399	11399		8.5933	2.2392	1		+		12511	10250	7340	7383	12025	12025					-0.07809090372518313
GPDHTPPSNP	10	Unmodified	_GPDHTPPSNP_					0	0	0			REV__KIAA0753|p.K638Nfs*18|1|0.33|ENSG00000198920|chr17:6607186-6607186|T/-|frameshift_variant	REV__KIAA0753|p.K638Nfs*18|1|0.33|ENSG00000198920|chr17:6607186-6607186|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	509.73309326171875	2	509.733063	1017.45157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.054	1	21.088	20.588	21.588	0.034473								0	0	0	0.84701	1	7317	7317		22.736	6.8891	1		+		12512	14166	7341	7384	12026	12026					-0.05645468010004606
GPDHWRFRPRR	11	Unmodified	_GPDHWRFRPRR_					0	0	0		ENST00000477409.1_1_2:97001567-97024936:+|nuORF;NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant;ENSG00000121152|ENST00000240423|NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MSMS	HCT116MG_D190212_S4	4	740.3948974609375	2	740.395067	1478.77558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.991	1	27.67	27.17	28.17	-0.32157								0	0	0	0.95925	1	10046	10046		1.4819	0	1				12513	2726	7342	7385	12027	12027					0.05534522268430919
GPDKEASGPGP	11	Unmodified	_GPDKEASGPGP_					0	0	0			REV__nc|ENSG00000006283|O43497-28|CACNA1G	REV__nc|ENSG00000006283|O43497-28|CACNA1G	MSMS	HCT116MG_D190212_S2	2	506.7043151855469	2	506.240721	1010.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.75	1	17.394	16.894	17.894	-0.35647								0	0	0	0.81249	1	6060	6060		31.268	2.1868	1		+		12514	17064	7343	7386	12028	12028					-0.037926012127968534
GPDLPELTGP	10	Unmodified	_GPDLPELTGP_					0	0	0		ENST00000588732.5_1_16:4853794-4854569:-|nuORF	ENST00000588732.5_1_16:4853794-4854569:-|nuORF	ENST00000588732.5_1_16:4853794-4854569:-|nuORF	MSMS	HCT116MG_D190212_S4	4	498.2549133300781	2	498.25584	994.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.195	1	27.863	27.363	28.363	-0.33138								0	0	0	0.89194	1	10128	10128		16.942	2.104	1				12515	9015	7344	7387	12029	12029					-0.0003424254762194323
GPDPAGPA	8	Unmodified	_GPDPAGPA_					0	0	0		ENST00000449103.5_1_22:50728891-50733190:-|nuORF	ENST00000449103.5_1_22:50728891-50733190:-|nuORF	ENST00000449103.5_1_22:50728891-50733190:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	681.3203735351562	1	681.320231	680.312954	0.9357	0.00063751	-0.28531	-0.00019438	0.65039	0.00044312	681.3197817743724	23.461	0.78168	23.422	23.083	23.865	-0.03968					22	14	2	0	0	0	0.21411	1	8244	8244		70.865	11.069	1	7549000			12516	7973	7345	7388	12030	12030					-0.03998966187668884
GPDPAGPA	8	Unmodified	_GPDPAGPA_					0	0	0		ENST00000449103.5_1_22:50728891-50733190:-|nuORF	ENST00000449103.5_1_22:50728891-50733190:-|nuORF	ENST00000449103.5_1_22:50728891-50733190:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	681.3197631835938	1	681.320231	680.312954	0.58772	0.00040043	0.3757	0.00025597	0.96343	0.0006564	681.3201925535044	23.493	0.8351	23.246	22.853	23.688	-0.24775					22	15	2	0	0	0	0.1757	1	8191	8191		78.445	7.5802	1	8057500			12517	7973	7345	7388	12031	12031					-0.03998966187668884
GPDPAPPHSD	10	Unmodified	_GPDPAPPHSD_					0	0	0			REV__ENST00000545087.1_1:2143528-2143765:-|nuORF	REV__ENST00000545087.1_1:2143528-2143765:-|nuORF	MSMS	HCT116MG_D190212_S4	4	495.224365234375	2	495.219788	988.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.729	1	20.52	20.02	21.02	-0.20851								0	0	0	0.89062	1	7114	7114		17.113	1.2657	1		+		12518	16391	7346	7389	12032	12032					-0.06965156901333103
GPDQPSAQANP	11	Unmodified	_GPDQPSAQANP_					0	0	0			REV__nc|ENSG00000114626|Q969K4-4|ABTB1	REV__nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-MSMS	HCT116MG_D190212_S1	1	541.249267578125	2	541.249077	1080.4836	0.59443	0.00032174	-0.30538	-0.00016529	0.28905	0.00015645	541.2490082832903	16.916	0.41689	16.916	16.629	17.046	0					11	7	2	0	0	0	0.68267	1	5748	5748		26.268	0	1	3379200	+		12519	17110	7347	7390	12033	12033					-0.053421003268795175
GPDQPSAQANP	11	Unmodified	_GPDQPSAQANP_					0	0	0			REV__nc|ENSG00000114626|Q969K4-4|ABTB1	REV__nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-MSMS	HCT116MG_D190212_S2	2	541.249267578125	2	541.249077	1080.4836	0.50613	0.00027394	0.13915	7.5312E-05	0.64527	0.00034925	541.2490536387154	17.151	0.57327	16.802	16.509	17.082	-0.34933					24	10	3	0	0	0	0.59037	1	5792	5792		36.506	5.2379	1	14031000	+		12520	17110	7347	7390	12034	12034					-0.053421003268795175
GPDQPSAQANP	11	Unmodified	_GPDQPSAQANP_					0	0	0			REV__nc|ENSG00000114626|Q969K4-4|ABTB1	REV__nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-SECPEP	HCT116MG_D190212_S2	2	541.3082885742188	2	541.249077	1080.4836	0.50613	0.00027394	0.13915	7.5312E-05	0.64527	0.00034925	541.2490536387154	17.151	0.57327	16.802	16.509	17.082	-0.34933					24	10	3	0	0	0	0.3312	1	5729	5729		26.268	1.2772	1	14031000	+		12521	17110	7347	7390	12035	12035					-0.053421003268795175
GPDQPSAQANP	11	Unmodified	_GPDQPSAQANP_					0	0	0			REV__nc|ENSG00000114626|Q969K4-4|ABTB1	REV__nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-MSMS	HCT116MG_D190212_S3	3	541.2493896484375	2	541.249077	1080.4836	0.34616	0.00018736	0.076075	4.1175E-05	0.42224	0.00022853	541.2490814990679	16.704	1.5085	16.789	15.82	17.329	0.084467					66	28	4	0	0	0	0.41825	2	5498	5275;5498		53.404	5.8096	1	38180000	+		12522	17110	7347	7390	12036;12037	12037					-0.053421003268795175
GPDREVQTVEK	11	Unmodified	_GPDREVQTVEK_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MSMS	HCT116MG_D190212_S3	3	629.3248901367188	2	629.325316	1256.63608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.819	1	23.758	23.258	24.258	-0.061449								0	0	0	0.93717	1	8429	8429		13.042	0	1		+		12523	13171	7348	7391	12038	12038					0.01802675349904348
GPDTHTRP	8	Unmodified	_GPDTHTRP_					0	0	0			REV__CAMSAP1|p.P1145H|1|0.38|ENSG00000130559|chr9:135821227-135821227|G/T|missense_variant	REV__CAMSAP1|p.P1145H|1|0.38|ENSG00000130559|chr9:135821227-135821227|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	440.71710205078125	2	440.717216	879.419879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.492	1	16.492	15.992	16.992	0								0	0	0	0.8837	1	5554	5554		2.8892	0	1		+		12524	10084	7349	7392	12039	12039					-0.024654159733017877
GPEAGDPI	8	Unmodified	_GPEAGDPI_					0	0	0			REV__ENST00000569673.2_1_15:74044535-74044889:-|nuORF	REV__ENST00000569673.2_1_15:74044535-74044889:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	755.3575439453125	1	755.35701	754.349734	0.53105	0.00040113	0.15448	0.00011669	0.68553	0.00051782	755.3569388534556	24.858	2.1878	24.774	22.987	25.174	-0.083694					73	41	3	0	0	0	0.66848	1	8500	8500		26.341	0	1	10847000	+		12525	16569	7350	7393	12040	12040					-0.03726714361766881
GPEAGDPI	8	Unmodified	_GPEAGDPI_					0	0	0			REV__ENST00000569673.2_1_15:74044535-74044889:-|nuORF	REV__ENST00000569673.2_1_15:74044535-74044889:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	755.3565063476562	1	755.35701	754.349734	1.0012	0.00075629	-0.033289	-2.5145E-05	0.96795	0.00073115	755.3566390668612	24.856	2.2366	24.587	22.884	25.121	-0.26881					71	42	3	0	0	0	0.66848	1	8487	8487		26.341	0	1	11601000	+		12526	16569	7350	7393	12041	12041					-0.03726714361766881
GPEAGEPFPGA	11	Unmodified	_GPEAGEPFPGA_					0	0	0			REV__ENSG00000139515|ENST00000381033|PDX1	REV__ENSG00000139515|ENST00000381033|PDX1	MSMS	HCT116MG_D190212_S4	4	514.7376098632812	2	514.737814	1027.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.935	1	50.58	50.08	51.08	-0.35483								0	0	0	0.80071	1	18941	18941		32.786	0.4802	1		+		12527	12263	7351	7394	12042	12042					-0.051556997244460945
GPEATQFPG	9	Unmodified	_GPEATQFPG_					0	0	0		ENST00000514463.1_1_3:126157220-126159113:-|nuORF;ENSG00000070476|ENST00000389709|ZXDC	ENST00000514463.1_1_3:126157220-126159113:-|nuORF	ENST00000514463.1_1_3:126157220-126159113:-|nuORF	MSMS	HCT116MG_D190212_S4	4	452.2129211425781	2	452.213975	902.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.865	1	26.554	26.054	27.054	-0.3114								0	0	0	0.76781	1	9591	9591		8.5933	1.304	1				12528	8521	7352	7395	12043	12043					-0.04171353924664345
GPECEHSILN	10	Unmodified	_GPECEHSILN_					0	0	0			REV__nc|ENSG00000117152|P49798-4|RGS4	REV__nc|ENSG00000117152|P49798-4|RGS4	MSMS	HCT116MG_D190212_S4	4	549.7455444335938	2	549.747856	1097.48116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.645	1	18.465	17.965	18.965	-0.18052								0	0	0	0.92272	1	6272	6272		10.824	2.0785	1		+		12529	17112	7353	7396	12044	12044					-0.06368272056147362
GPEDMSFFTY	10	Unmodified	_GPEDMSFFTY_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	HCT116MG_D190212_S4	4	596.7931518554688	2	597.244615	1192.47468	0.99515	0.00059435	-1.1689	-0.00069809	-0.17371	-0.00010375	597.2439967421665	34.499	0.35613	34.113	33.932	34.288	-0.38558					9	6	2	0	0	0	0.82332	1	12633	12633		10.074	2.9722	1	3065100	+		12530	14140	7354	7397	12045	12045					-0.11386210007526643
GPEEARQPQ	9	Unmodified	_GPEEARQPQ_					0	0	0			REV__ENST00000397091.9_1_8:38325994-38326072:-|nuORF	REV__ENST00000397091.9_1_8:38325994-38326072:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	506.2467346191406	2	506.246338	1010.47812	-0.30655	-0.00015519	0.5467	0.00027676	0.24015	0.00012157	506.2463731412495	16.782	0.46743	16.616	16.452	16.919	-0.16664					10	8	2	0	0	0	0.45867	1	5532	5532		19.257	1.8143	1	1313500	+		12531	15367	7355	7398	12046	12046					-0.026697791186620634
GPEEARQPQ	9	Unmodified	_GPEEARQPQ_					0	0	0			REV__ENST00000397091.9_1_8:38325994-38326072:-|nuORF	REV__ENST00000397091.9_1_8:38325994-38326072:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	506.246338	1010.47812	0.42047	0.00021286	1.1463	0.00058029	1.5667	0.00079315	506.24672442562576	16.719	0.31229	16.377	16.1	16.412	-0.34183	-0.11939	0.00056039	NaN	19.257	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1760400	+		12532	15367	7355	7398							-0.026697791186620634
GPEEKIRPP	9	Unmodified	_GPEEKIRPP_					0	0	0			REV__ENST00000512215.5_1_4:102268226-102268316:-|nuORF	REV__ENST00000512215.5_1_4:102268226-102268316:-|nuORF	MSMS	HCT116MG_D190212_S3	3	511.78497314453125	2	511.785099	1021.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.398	1	26.248	25.748	26.748	-0.14924								0	0	0	0.69272	1	9468	9468		19.439	0.18201	1		+		12533	16190	7356	7399	12047	12047					0.045728588175165896
GPEGDRGR	8	Unmodified	_GPEGDRGR_					0	0	0			REV__nc|ENSG00000139219|P02458-1|COL2A1	REV__nc|ENSG00000139219|P02458-1|COL2A1	MSMS	HCT116MG_D190212_S4	4	422.20794677734375	2	422.207015	842.399478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.999	1	15.835	15.335	16.335	-0.16364								0	0	0	0.8837	1	5203	5203		5.7604	0	1		+		12534	12253	7357	7400	12048	12048					-0.028025866330835925
GPEGGEPRSP	10	Unmodified	_GPEGGEPRSP_					0	0	0			REV__nc|ENSG00000170473|Q9BRP8-2|PYM1	REV__nc|ENSG00000170473|Q9BRP8-2|PYM1	MULTI-SECPEP	HCT116MG_D190212_S4	4	491.2015686035156	2	491.733063	981.451573	0.14123	6.9447E-05	0.63967	0.00031455	0.7809	0.00038399	491.73351766761886	20.476	0.26009	20.274	20.144	20.404	-0.20133					6	4	2	0	0	0	0.27864	1	7041	7041		17.113	0	1	2449000	+		12535	13303	7358	7401	12049	12049					-0.0398946800999056
GPEGGGQVH	9	Unmodified	_GPEGGGQVH_					0	0	0		ENST00000461081.2_1_12:124816664-124819403:-|nuORF	ENST00000461081.2_1_12:124816664-124819403:-|nuORF	ENST00000461081.2_1_12:124816664-124819403:-|nuORF	MSMS	HCT116MG_D190212_S3	3	419.1960144042969	2	419.196116	836.37768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.836	1	17.917	17.417	18.417	0.081358								0	0	0	0.64498	1	6019	6019		21.747	2.3076	1				12536	8050	7359	7402	12050	12050					-0.047053913816625936
GPEGKEGSPGP	11	Unmodified	_GPEGKEGSPGP_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S3	3	506.2397766113281	2	506.240721	1010.46689	0.014747	7.4658E-06	0.37774	0.00019123	0.39248	0.00019869	506.2407988380641	17.582	1.0927	17.664	17.013	18.106	0.081358					25	20	2	0	0	0	0.55933	1	5935	5935		39.95	1.7741	1	2033700	+		12537	10913	7360	7403	12051	12051					-0.037926012127968534
GPEGKEGSPGP	11	Unmodified	_GPEGKEGSPGP_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-SECPEP	HCT116MG_D190212_S3	3	505.7303771972656	2	506.240721	1010.46689	0.014747	7.4658E-06	0.37774	0.00019123	0.39248	0.00019869	506.2407988380641	17.582	1.0927	17.664	17.013	18.106	0.081358					25	20	2	0	0	0	0.29428	1	5975	5975		39.95	5.0176	1	2033700	+		12538	10913	7360	7403	12052	12052					-0.037926012127968534
GPEGPEGAP	9	Unmodified	_GPEGPEGAP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	810.3632202148438	1	810.362824	809.355547	0.90066	0.00072986	-0.76045	-0.00061624	0.14021	0.00011362	810.3625034333086	18.589	1.2494	18.663	17.838	19.088	0.073885					37	23	2	0	0	0	0.19218	1	6123	6123		42.095	4.1206	1	3805200	+		12539	13018	7361	7404	12053	12053					-0.05675615850088889
GPEGPEGAP	9	Unmodified	_GPEGPEGAP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	810.3636474609375	1	810.362824	809.355547	0.83333	0.0006753	-0.091596	-7.4226E-05	0.74173	0.00060107	810.3626858920595	18.824	0.98517	18.644	17.942	18.927	-0.18052					28	18	2	0	0	0	0.088989	1	6169	6169		60.39	5.616	1	3168500	+		12540	13018	7361	7404	12054	12054					-0.05675615850088889
GPEGPEGAPG	10	Unmodified	_GPEGPEGAPG_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	434.1959228515625	2	434.195782	866.377011	0.013732	5.9622E-06	0.096894	4.2071E-05	0.11063	4.8033E-05	434.19571034175846	18.115	1.3532	18.191	17.425	18.778	0.076334					48	25	3	0	0	0	0.51573	1	5962	5962		34.102	1.797	1	11714000	+		12541	13018	7362	7405	12055	12055					-0.06152230821373905
GPEGPEGAPG	10	Unmodified	_GPEGPEGAPG_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	867.385498046875	1	867.384288	866.377011	0.64444	0.00055897	0.10973	9.518E-05	0.75417	0.00065415	867.3842731418222	17.935	0.83296	18.012	17.686	18.519	0.077509					24	15	2	0	0	0	0.061797	1	5992	5992		81.613	6.6841	1	4732500	+		12542	13018	7362	7405	12056	12056					-0.06152230821373905
GPEGPEGAPG	10	Unmodified	_GPEGPEGAPG_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	867.3853759765625	1	867.384288	866.377011	0.61804	0.00053608	0.028667	2.4866E-05	0.64671	0.00056094	867.384339156015	18.201	0.93307	18.026	17.48	18.413	-0.17501					26	17	2	0	0	0	0.047709	1	5998	5998		88.904	7.0134	1	3399900	+		12543	13018	7362	7405	12057	12057					-0.06152230821373905
GPEGPEGAPG	10	Unmodified	_GPEGPEGAPG_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	867.384288	866.377011	0.64444	0.00055897	0.10973	9.518E-05	0.75417	0.00065415	867.3842731418222	17.935	0.83296	18.012	17.686	18.519	0.077509	-0.064237	3.1831E-05	NaN	88.904	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4732500	+		12544	13018	7362	7405							-0.06152230821373905
GPEGPEGAPG	10	Unmodified	_GPEGPEGAPG_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	867.384288	866.377011	0.61804	0.00053608	0.028667	2.4866E-05	0.64671	0.00056094	867.384339156015	18.201	0.93307	18.026	17.48	18.413	-0.17501	-0.050671	-3.8483E-05	NaN	88.904	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3399900	+		12545	13018	7362	7405							-0.06152230821373905
GPEGSHGRP	9	Unmodified	_GPEGSHGRP_					0	0	0			REV__ENSG00000123500|ENST00000651968|COL10A1	REV__ENSG00000123500|ENST00000651968|COL10A1	MULTI-SECPEP	HCT116MG_D190212_S4	4	447.0998229980469	2	447.21484	892.415128	-0.0096037	-4.2949E-06	0.11217	5.0165E-05	0.10257	4.587E-05	447.21488063342247	17.608	0.36354	17.438	17.121	17.484	-0.17046					10	6	2	0	0	0	0.24195	1	5810	5810		18.135	9.5417	1	1717800	+		12546	11767	7363	7406	12058	12058					-0.03538300116042592
GPEGVGRPGKP	11	Unmodified	_GPEGVGRPGKP_					0	0	0		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S3	3	525.78857421875	2	525.788173	1049.56179	0.33262	0.00017489	-0.17745	-9.33E-05	0.15517	8.1587E-05	525.788163191253	23.253	0.57284	23.213	22.823	23.396	-0.03968					16	10	2	0	0	0	0.70662	1	8151	8151		19.362	0.10495	1	4943600			12547	1447	7364	7407	12059	12059					0.03899377049060604
GPEGVGRPGKP	11	Unmodified	_GPEGVGRPGKP_					0	0	0		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	525.788173	1049.56179	0.33262	0.00017489	-0.17745	-9.33E-05	0.15517	8.1587E-05	525.788163191253	23.253	0.57284	23.213	22.823	23.396	-0.03968	0.045081	1.1711E-05	NaN	19.362	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4943600			12548	1447	7364	7407							0.03899377049060604
GPEIMEMSDP	10	Unmodified	_GPEIMEMSDP_					0	0	0		ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	MULTI-SECPEP	HCT116MG_D190212_S4	4	552.7337036132812	2	553.23065	1104.44675	0.42892	0.00023729	2.9513	0.0016327	3.3802	0.00187	553.2328317548852	29.96	0.46807	29.603	29.337	29.805	-0.3571					11	8	2	0	0	0	0.29734	1	10835	10835		13.906	0	1	1779600			12549	1969	7365	7408	12060	12060					-0.10129856259277403
GPELLVDY	8	Unmodified	_GPELLVDY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MSMS	HCT116MG_D190212_S4	4	453.23431396484375	2	453.234376	904.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.332	1	26.031	25.531	26.531	-0.30087								0	0	0	0.8837	1	9375	9375		15.768	0	1				12550	1244;1770	7366	7409	12061	12061					-0.0018501260504990569
GPENIVWSPGS	11	Unmodified	_GPENIVWSPGS_					0	0	0		ENST00000488252.6_1_19:19287776-19287851:-|nuORF	ENST00000488252.6_1_19:19287776-19287851:-|nuORF	ENST00000488252.6_1_19:19287776-19287851:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	571.7779541015625	2	571.77747	1141.54039	0.50219	0.00028714	0.57583	0.00032924	1.078	0.00061638	571.7778876395702	26.483	0.57217	26.182	25.817	26.389	-0.30087					14	10	2	0	0	0	0.71776	1	9459	9459		15.248	0	1	2622000			12551	8312	7367	7410	12062	12062					-0.02472052770326627
GPEPGPGPAG	10	Unmodified	_GPEPGPGPAG_					0	0	0			REV__nc|ENSG00000177679|A6NNA2|SRRM3	REV__nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-MSMS	HCT116MG_D190212_S2	2	418.20074462890625	2	418.200867	834.387182	-0.11504	-4.8108E-05	0.43183	0.00018059	0.31679	0.00013248	418.20086579626314	19.193	0.73002	18.823	18.314	19.044	-0.3695					25	13	2	0	0	0	0.13038	1	6604	6604		68.081	6.7232	1	5509300	+		12552	13581	7368	7411	12063	12063					-0.03663623096133506
GPEPGPGPAG	10	Unmodified	_GPEPGPGPAG_					0	0	0			REV__nc|ENSG00000177679|A6NNA2|SRRM3	REV__nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-MSMS	HCT116MG_D190212_S3	3	418.20086669921875	2	418.200867	834.387182	0.05987	2.5037E-05	0.2	8.3641E-05	0.25987	0.00010868	418.2007803180499	18.809	1.2494	18.878	17.886	19.135	0.069159					44	23	3	0	0	0	0.1448	1	6466	6466		65.235	12.967	1	13187000	+		12553	13581	7368	7411	12064	12064					-0.03663623096133506
GPEPGPGPAG	10	Unmodified	_GPEPGPGPAG_					0	0	0			REV__nc|ENSG00000177679|A6NNA2|SRRM3	REV__nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-MSMS	HCT116MG_D190212_S4	4	418.2007751464844	2	418.200867	834.387182	0.089795	3.7552E-05	0.28825	0.00012055	0.37805	0.0001581	418.2007981067774	18.961	1.2452	18.774	17.988	19.233	-0.18674					49	23	3	0	0	0	0.079351	1	6449	6449		78.149	7.0158	1	9916300	+		12554	13581	7368	7411	12065	12065					-0.03663623096133506
GPEPGPGPAG	10	Unmodified	_GPEPGPGPAG_					0	0	0			REV__nc|ENSG00000177679|A6NNA2|SRRM3	REV__nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	418.200867	834.387182	-0.11504	-4.8108E-05	0.43183	0.00018059	0.31679	0.00013248	418.20086579626314	19.193	0.73002	18.823	18.314	19.044	-0.3695	-0.0018912	0.0001393	NaN	78.149	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5509300	+		12555	13581	7368	7411							-0.03663623096133506
GPEPLNADRQ	10	Unmodified	_GPEPLNADRQ_					0	0	0		ENST00000256447.5_2_5:66477572-66477668:-|nuORF	ENST00000256447.5_2_5:66477572-66477668:-|nuORF	ENST00000256447.5_2_5:66477572-66477668:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	549.2767333984375	2	548.772719	1095.53089	0.5779	0.00031714	1.1891	0.00065256	1.767	0.0009697	549.2755080135224	20.931	1.0909	20.722	20.136	21.227	-0.20959					23	20	2	0	0	0	0.78781	1	7213	7213		13.042	2.243	1	2427400			12556	6822	7369	7412	12066	12066					-0.013058210558483552
GPEPLNADRQ	10	Unmodified	_GPEPLNADRQ_					0	0	0		ENST00000256447.5_2_5:66477572-66477668:-|nuORF	ENST00000256447.5_2_5:66477572-66477668:-|nuORF	ENST00000256447.5_2_5:66477572-66477668:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	548.772719	1095.53089	0.29239	0.00016045	0.055222	3.0304E-05	0.34761	0.00019076	548.7725148397191	20.764	0.93688	20.799	20.35	21.287	0.034473	0.038358	-0.00035974	NaN	13.042	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2031800			12557	6822	7369	7412							-0.013058210558483552
GPEPPGGQP	9	Unmodified	_GPEPPGGQP_					0	0	0		nc|ENSG00000161082|Q8N6W0-2|CELF5;ENSG00000161082|ENST00000292672|CELF5	nc|ENSG00000161082|Q8N6W0-2|CELF5	nc|ENSG00000161082|Q8N6W0-2|CELF5	MULTI-MSMS	HCT116MG_D190212_S4	4	418.70294189453125	2	418.200867	834.387182	0.089795	3.7552E-05	0.28825	0.00012055	0.37805	0.0001581	418.2007981067774	18.961	1.2452	18.774	17.988	19.233	-0.18674					49	23	3	0	0	0	0.57626	1	6152	6152		12.532	0	1	9916300			12558	4481	7370	7413	12067	12067					-0.03663623096133506
GPEPTPAPPP	10	Unmodified	_GPEPTPAPPP_					0	0	0			REV__ENST00000296350.9_1_3:196729451-196730141:-|nuORF	REV__ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MSMS	HCT116MG_D190212_S4	4	479.78204345703125	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.674	1	28.335	27.835	28.835	-0.33939								0	0	0	0.75886	1	10322	10322		34.102	3.4659	1		+		12559	14760	7371	7414	12068	12068					-0.0049020785647826415
GPEPTPAPPP	10	Unmodified	_GPEPTPAPPP_					0	0	0			REV__ENST00000296350.9_1_3:196729451-196730141:-|nuORF	REV__ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	479.7632141113281	2	480.245275	958.475997	0.34366	0.00016504	-1.121	-0.00053834	-0.7773	-0.0003733	480.24516450532536	26.976	0.77913	26.664	26.327	27.106	-0.3114					24	14	2	0	0	0	0.24727	1	9801	9801		34.102	8.7031	1	4486300	+		12560	14760	7371	7414	12069	12069					-0.0049020785647826415
GPERRPWVP	9	Unmodified	_GPERRPWVP_					0	0	0		ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	MSMS	HCT116MG_D190212_S2	2	547.297607421875	2	547.298707	1092.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.595	1	18.232	17.732	18.732	-0.36325								0	0	0	0.74436	1	6400	6400		16.942	0	1				12561	6632	7372	7415	12070	12070					0.04027387148562411
GPERRPWVP	9	Unmodified	_GPERRPWVP_					0	0	0		ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	MSMS	HCT116MG_D190212_S3	3	547.2981567382812	2	547.298707	1092.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.13	1	29.88	29.38	30.38	-0.24946								0	0	0	0.7676	1	10970	10970		9.3474	1.4373	1				12562	6632	7372	7415	12071	12071					0.04027387148562411
GPERRVYVHVP	11	Unmodified	_GPERRVYVHVP_					0	0	0		ENST00000336156.9_1_22:45592445-45593009:-|nuORF	ENST00000336156.9_1_22:45592445-45593009:-|nuORF	ENST00000336156.9_1_22:45592445-45593009:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	655.2899780273438	2	654.862203	1307.70985	0.57304	0.00037526	4.4735	0.0029295	5.0466	0.0033048	654.8661300859512	44.19	0.32216	44.19	44.088	44.41	0					6	5	2	0	0	0	0.73177	1	16699	16699		10.074	0.6908	1	3502600			12563	7193	7373	7416	12072	12072					0.06830688302898125
GPETRLSPQP	10	Unmodified	_GPETRLSPQP_					0	0	0		nc|ENSG00000187556|P60323|NANOS3;ENSG00000187556|ENST00000339133|NANOS3	nc|ENSG00000187556|P60323|NANOS3	nc|ENSG00000187556|P60323|NANOS3	MULTI-MSMS	HCT116MG_D190212_S3	3	541.2858276367188	2	541.285463	1080.55637	0.50331	0.00027244	-0.053453	-2.8933E-05	0.44986	0.0002435	541.2855906946508	27.009	0.72888	26.84	26.391	27.12	-0.16933					18	13	2	0	0	0	0.58749	1	9810	9810		29.082	11.969	1	3382700			12564	5946	7374	7417	12073	12073					0.019316534665676954
GPETSCQSFW	10	Unmodified	_GPETSCQSFW_					0	0	0		ENST00000530891.3_1_15:85175130-85175559:+|nuORF;nc|ENSG00000176700|Q9GZW5-2|SCAND2P;ENST00000348993.9_1_15:85175130-85180634:+|nuORF;nc|ENSG00000176700|Q9GZW5|SCAND2P	ENST00000530891.3_1_15:85175130-85175559:+|nuORF	ENST00000530891.3_1_15:85175130-85175559:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	571.351318359375	2	571.234581	1140.45461	0.46173	0.00026375	-0.83495	-0.00047695	-0.37322	-0.0002132	571.2342357285363	22.623	0.51923	22.238	22.051	22.57	-0.3852					15	9	3	0	0	0	0.30812	1	8134	8134		7.2892	5.8073	1	42082000			12565	7271	7375	7418	12074	12074					-0.10999960947515319
GPEVTFIYRDP	11	Unmodified	_GPEVTFIYRDP_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000532415.5_1_16:18480742-18495490:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MSMS	HCT116MG_D190212_S4	4	647.3263549804688	2	647.327328	1292.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.292	1	24.034	23.534	24.534	-0.25816								0	0	0	0.92235	1	8551	8551		17.113	4.0704	1				12566	864	7376	7419	12075	12075					0.005487648435973824
GPFDYVGAP	9	Unmodified	_GPFDYVGAP_					0	0	0		ENST00000554655.5_1_14:24837525-24841293:+|nuORF;nc|ENSG00000100968|Q14934-11|NFATC4;nc|ENSG00000100968|Q14934-3|NFATC4;nc|ENSG00000100968|Q14934-4|NFATC4;nc|ENSG00000100968|Q14934-5|NFATC4;nc|ENSG00000100968|Q14934-6|NFATC4;nc|ENSG00000100968|Q14934-7|NFATC4;ENSG00000100968|ENST00000250373|NFATC4;nc|ENSG00000100968|Q14934-8|NFATC4;nc|ENSG00000100968|Q14934-9|NFATC4;nc|ENSG00000100968|Q14934-10|NFATC4;NFATC4|p.A853Gfs*31|1|0.47|ENSG00000100968|chr14:24376789-24376790|-/G|frameshift_variant;NFATC4|p.Y722Tfs*122|1|0.43|ENSG00000100968|chr14:24376395-24376395|C/-|frameshift_variant;ENST00000440487.6_1_14:24834883-24840960:+|nuORF;nc|ENSG00000100968|Q14934-12|NFATC4;nc|ENSG00000100968|Q14934-13|NFATC4;nc|ENSG00000100968|Q14934-14|NFATC4;NFATC4|p.F811Lfs*13|1|0.48|ENSG00000100968|chr14:24376662-24376663|-/C|frameshift_variant;nc|ENSG00000100968|Q14934-15|NFATC4;nc|ENSG00000100968|Q14934-16|NFATC4;nc|ENSG00000100968|Q14934-17|NFATC4;nc|ENSG00000100968|Q14934-18|NFATC4;ENST00000556957.5_1_14:24836547-24843333:+|nuORF;ENST00000556302.5_1_14:24838518-24843333:+|nuORF;nc|ENSG00000100968|Q14934-2|NFATC4	ENST00000554655.5_1_14:24837525-24841293:+|nuORF	ENST00000554655.5_1_14:24837525-24841293:+|nuORF	MSMS	HCT116MG_D190212_S4	4	462.1466369628906	2	461.718893	921.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.709	1	22.472	21.972	22.972	-0.23758								0	0	0	0.7676	1	7915	7915		9.3474	0.75416	1				12567	1745	7377	7420	12076	12076					-0.04062165919287963
GPFKKSVETA	10	Unmodified	_GPFKKSVETA_					0	0	0			REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF	REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	355.1972961425781	3	355.197596	1062.57096	-0.015449	-5.4876E-06	-0.54619	-0.000194	-0.56164	-0.00019949	355.19739080030126	28.461	0.26062	28.255	28.125	28.385	-0.20593					7	4	2	0	0	0	0.87195	1	10322	10322		5.4027	0.10583	1	7397900	+		12568	10677	7378	7421	12077	12077					0.04217725614716983
GPFPWRRVP	9	Unmodified	_GPFPWRRVP_					0	0	0			REV__ENST00000454741.5_1_22:28395954-28396164:+|nuORF	REV__ENST00000454741.5_1_22:28395954-28396164:+|nuORF	MSMS	HCT116MG_D190212_S3	3	371.21160888671875	3	371.210171	1110.60868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.604	1	58.334	57.834	58.834	-0.26932								0	0	0	0.7696	1	22297	22297		1.1933	0	1		+		12569	15738	7379	7422	12078	12078					0.05780281390843811
GPFRGRASGP	10	Unmodified	_GPFRGRASGP_					0	0	0			REV__ENSG00000272333|ENST00000420124|KMT2B	REV__ENSG00000272333|ENST00000420124|KMT2B	MSMS	HCT116MG_D190212_S4	4	501.7129821777344	2	501.267407	1000.52026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.51	1	21.292	20.792	21.792	-0.21832								0	0	0	0.80241	1	7430	7430		28.487	0.85804	1		+		12570	14442	7380	7423	12079	12079					0.02002241080379008
GPFVAGLY	8	Unmodified	_GPFVAGLY_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-MSMS	HCT116MG_D190212_S2	2	823.435546875	1	823.434867	822.42759	0.9633	0.00079322	0.11809	9.7243E-05	1.0814	0.00089046	823.4347950978888	56.368	0.15519	56.186	56.104	56.259	-0.18261					6	2	3	0	0	0	0.75115	1	21772	21772		17.087	0	1	28488000	+		12571	14059	7381	7424	12080	12080					0.009273432942677573
GPGADGERGAP	11	Unmodified	_GPGADGERGAP_					0	0	0			REV__ENST00000468491.1_1_X:153073542-153095123:-|nuORF	REV__ENST00000468491.1_1_X:153073542-153095123:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2307434082031	2	492.230687	982.446822	0.15619	7.688E-05	0.20271	9.9781E-05	0.3589	0.00017666	492.2310129170249	15.268	0.4172	14.941	14.706	15.123	-0.32684					11	7	2	0	0	0	0.68267	1	5051	5051		26.268	2.2476	1	1594800	+		12572	15845	7382	7425	12081	12081					-0.045103521527494195
GPGAGDQVH	9	Unmodified	_GPGAGDQVH_					0	0	0			REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	MULTI-SECPEP	HCT116MG_D190212_S4	4	418.7042236328125	2	419.196116	836.37768	-0.42133	-0.00017662	0.77721	0.0003258	0.35589	0.00014919	419.19657472785184	16.574	0.25255	16.408	16.303	16.556	-0.16664					5	4	2	0	0	0	0.23177	1	5457	5457		14.582	0	1	605470	+		12573	17229	7383	7426	12082	12082					-0.047053913816625936
GPGAPLLY	8	Unmodified	_GPGAPLLY_					0	0	0		ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	MULTI-MSMS	HCT116MG_D190212_S3	3	394.2209167480469	2	394.221072	786.42759	-0.41771	-0.00016467	0.96792	0.00038157	0.55021	0.0002169	394.2211316156291	36.16	0.36396	35.86	35.678	36.042	-0.30042					13	6	3	0	0	0	0.8029	1	13402	13402		11.114	4.7604	1	10551000			12574	3352	7384	7427	12083	12083					0.02583343294270435
GPGAPPRGER	10	Unmodified	_GPGAPPRGER_					0	0	0			REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	497.45648193359375	2	497.264865	992.515176	-0.17897	-8.8997E-05	-0.52848	-0.00026279	-0.70745	-0.00035179	497.26458422638876	15.128	0.20403	14.967	14.825	15.029	-0.16089					5	3	2	0	0	0	0.30027	1	4851	4851		11.64	0	1	540030	+		12575	15600	7385	7428	12084	12084					0.01861937217756804
GPGAVPGMP	9	Unmodified	_GPGAVPGMP_					0	0	0		ENSG00000069011|ENST00000265340|PITX1	ENSG00000069011|ENST00000265340|PITX1	ENSG00000069011|ENST00000265340|PITX1	MULTI-SECPEP	HCT116MG_D190212_S3	3	391.2839660644531	2	391.696906	781.37926	0.067636	2.6493E-05	-0.6108	-0.00023925	-0.54316	-0.00021275	391.69665549499064	29.294	0.26033	29.072	28.942	29.202	-0.22195					6	4	2	0	0	0	0.25067	1	10666	10666		5.2307	2.3415	1	2161600			12576	1211	7386	7429	12085	12085					-0.020174736172634766
GPGAWRRP	8	Unmodified	_GPGAWRRP_					0	0	0		ENST00000177694.1_1_17:45810693-45811185:+|nuORF	ENST00000177694.1_1_17:45810693-45811185:+|nuORF	ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MSMS	HCT116MG_D190212_S4	4	448.7450256347656	2	448.746111	895.477669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.139	1	28.799	28.299	29.299	-0.34059								0	0	0	0.86899	1	10510	10510		17.087	3.5787	1				12577	6719	7387	7430	12086	12086					0.025748907427896484
GPGEEWERRPQ	11	Unmodified	_GPGEEWERRPQ_					0	0	0		CPXM2|p.G655Efs*9|1|0.31|ENSG00000121898|chr10:123754718-123754718|T/-|frameshift_variant;CPXM2|p.A711Pfs*35|1|0.36|ENSG00000121898|chr10:123746904-123746904|C/-|frameshift_variant;ENSG00000121898|ENST00000241305|CPXM2	CPXM2|p.G655Efs*9|1|0.31|ENSG00000121898|chr10:123754718-123754718|T/-|frameshift_variant	CPXM2|p.G655Efs*9|1|0.31|ENSG00000121898|chr10:123754718-123754718|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	670.8208618164062	2	670.820732	1339.62691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.071	1	17.896	17.396	18.396	-0.17501								0	0	0	0.95113	1	6040	6040		5.7319	0.43497	1				12578	597	7388	7431	12087	12087					-0.029316732157894876
GPGEPRGQQP	10	Unmodified	_GPGEPRGQQP_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1;XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MULTI-SECPEP	HCT116MG_D190212_S4	4	512.2464599609375	2	511.75433	1021.49411	-0.1611	-8.2444E-05	0.88949	0.0004552	0.72839	0.00037276	511.75471600124155	17.351	0.41329	17.181	16.863	17.277	-0.17047					12	7	2	0	0	0	0.25173	1	5725	5725		21.537	0	1	1306200			12579	1896	7389	7432	12088	12088					-0.015780728817617273
GPGESRHEP	9	Unmodified	_GPGESRHEP_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2253112792969	2	483.225405	964.436257	0.15313	7.3998E-05	0.25896	0.00012514	0.41209	0.00019913	483.2257857880771	19.906	1.0934	19.954	19.114	20.207	0.048107					27	20	2	0	0	0	0.37539	1	6942	6942		24.021	0	1	3225300			12580	2054	7390	7433	12089	12089					-0.047383348071889486
GPGGVSSDLHY	11	Unmodified	_GPGGVSSDLHY_					0	0	0			REV__ENST00000600252.5_1_19:15219832-15221230:+|nuORF	REV__ENST00000600252.5_1_19:15219832-15221230:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1088.5009765625	1	1088.50071	1087.49344	0.84088	0.0009153	-0.70806	-0.00077072	0.13282	0.00014458	1088.500306841669	29.598	0.36151	29.297	29.134	29.495	-0.30096					9	6	2	0	0	0	0.64329	1	10890	10890		30.637	30.637	1	8162500	+		12581	11237	7391	7434	12090	12090					-0.04680912321464348
GPGHGYDG	8	Unmodified	_GPGHGYDG_					0	0	0		ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;ENSG00000135926|ENST00000258412|TMBIM1	ENST00000466012.5_1_2:219142848-219157252:-|nuORF	ENST00000466012.5_1_2:219142848-219157252:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	759.3059692382812	1	759.305643	758.298367	0.89562	0.00068005	-0.72194	-0.00054817	0.17368	0.00013188	759.3050144939153	34.779	0.41558	34.779	34.545	34.961	0					12	7	2	0	0	0	0.87576	1	12902	12902		0.79363	0	1	14084000			12582	3383	7392	7435	12091	12091					-0.09045038335807476
GPGILSIP	8	Unmodified	_GPGILSIP_					0	0	0		CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant	CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant	CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	377.2279357910156	2	377.228897	752.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.279	1	24.999	24.499	25.499	-0.27958								0	0	0	0.8837	1	8950	8950		6.3541	0	1				12583	610	7393	7436	12092	12092					0.057116298113214725
GPGIMINQSGP	11	Unmodified	_GPGIMINQSGP_					0	0	0			REV__ENST00000476641.2_1_20:40101874-40113142:-|nuORF	REV__ENST00000476641.2_1_20:40101874-40113142:-|nuORF	MSMS	HCT116MG_D190212_S3	3	535.7684936523438	2	535.768591	1069.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.234	1	24.172	23.672	24.672	-0.061449								0	0	0	0.9469	1	8596	8596		10.074	2.7847	1		+		12584	15920	7394	7437	12093	12093					-0.009350912968329794
GPGLDSHLQPG	11	Unmodified	_GPGLDSHLQPG_					0	0	0		ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	MSMS	HCT116MG_D190212_S4	4	539.2696533203125	2	539.269813	1076.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.017	1	41.641	41.141	42.141	-0.37637								0	0	0	0.90571	1	15427	15427		19.257	5.3509	1				12585	2890	7395	7438	12094	12094					-0.010129195675290248
GPGLLSQGF	9	Unmodified	_GPGLLSQGF_					0	0	0		AMER3|p.D477G|1|0.18|ENSG00000178171|chr2:130763502-130763502|A/G|missense_variant	AMER3|p.D477G|1|0.18|ENSG00000178171|chr2:130763502-130763502|A/G|missense_variant	AMER3|p.D477G|1|0.18|ENSG00000178171|chr2:130763502-130763502|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	438.2332458496094	2	438.23471	874.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.362	1	26.062	25.562	26.562	-0.30087								0	0	0	0.71969	1	9387	9387		18.135	7.3111	1				12586	123	7396	7439	12095	12095					0.012618268346727746
GPGLPEGPR	9	Unmodified	_GPGLPEGPR_					0	0	0			REV__ENST00000376007.8_1_6:31588511-31590634:+|nuORF	REV__ENST00000376007.8_1_6:31588511-31590634:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	440.23785400390625	2	440.237784	878.461016	0.082777	3.6442E-05	0.13476	5.9326E-05	0.21754	9.5768E-05	440.2377423913788	20.133	1.8223	20.181	19.478	21.3	0.048107					58	34	3	0	0	0	0.33687	1	6790	6790		26.884	0	1	12899000	+		12587	15222	7397	7440	12096	12096					0.01692345066192047
GPGMRGMPGSP	11	Unmodified	_GPGMRGMPGSP_					0	0	0		COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1;COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant;nc|ENSG00000168542|P02461-2|COL3A1	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	522.2410888671875	2	522.241686	1042.46882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.148	1	16.977	16.477	17.477	-0.17047								0	0	0	0.94538	1	5667	5667		8.7454	0.58988	1				12588	519	7398	7441	12097	12097					-0.05071587000202271
GPGPEAPGA	9	Unmodified	_GPGPEAPGA_					0	0	0			REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	376.6822814941406	2	376.682311	751.350068	-0.10288	-3.8754E-05	-0.15362	-5.7867E-05	-0.2565	-9.6621E-05	376.6822156529905	19.471	0.4683	19.531	19.126	19.594	0.059828					10	8	2	0	0	0	0.17018	1	6685	6685		44.407	3.9584	1	2013000	+		12589	15848	7399	7442	12098	12098					-0.03555294641910223
GPGPEAPGA	9	Unmodified	_GPGPEAPGA_					0	0	0			REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	376.6824951171875	2	376.682311	751.350068	0.011109	4.1845E-06	-0.068867	-2.5941E-05	-0.057758	-2.1756E-05	376.68224414551753	19.602	0.66607	19.408	19.018	19.684	-0.19367					14	12	2	0	0	0	0.12335	1	6614	6614		53.576	15.424	1	2358500	+		12590	15848	7399	7442	12099	12099					-0.03555294641910223
GPGPEAPGA	9	Unmodified	_GPGPEAPGA_					0	0	0			REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	376.682311	751.350068	-0.10288	-3.8754E-05	-0.15362	-5.7867E-05	-0.2565	-9.6621E-05	376.6822156529905	19.471	0.4683	19.531	19.126	19.594	0.059828	0.06153	-2.4042E-05	NaN	53.576	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2013000	+		12591	15848	7399	7442							-0.03555294641910223
GPGPEAPGA	9	Unmodified	_GPGPEAPGA_					0	0	0			REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	376.682311	751.350068	0.011109	4.1845E-06	-0.068867	-2.5941E-05	-0.057758	-2.1756E-05	376.68224414551753	19.602	0.66607	19.408	19.018	19.684	-0.19367	-0.06153	3.9809E-05	NaN	53.576	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2358500	+		12592	15848	7399	7442							-0.03555294641910223
GPGPPVPRHVP	11	Unmodified	_GPGPPVPRHVP_					0	0	0			REV__ENST00000251691.4_1_6:138632571-138634975:+|nuORF	REV__ENST00000251691.4_1_6:138632571-138634975:+|nuORF	MSMS	HCT116MG_D190212_S3	3	555.3136596679688	2	555.314358	1108.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.269	1	24.208	23.708	24.708	-0.061449								0	0	0	0.94924	1	8610	8610		6.7232	0.51738	1		+		12593	14585	7400	7443	12100	12100					0.06419960182665818
GPGPPYSSQAQ	11	Unmodified	_GPGPPYSSQAQ_					0	0	0			REV__nc|ENSG00000188848|Q6ZU67-2|BEND4	REV__nc|ENSG00000188848|Q6ZU67-2|BEND4	MULTI-MSMS	HCT116MG_D190212_S3	3	1088.501953125	1	1088.50071	1087.49344	0.54394	0.00059208	0.10867	0.00011829	0.65261	0.00071037	1088.5007305786355	29.763	0.8945	29.526	28.927	29.822	-0.23655					32	16	3	0	0	0	0.57136	1	10739	10739		38.615	2.1085	1	10838000	+		12594	13976	7401	7444	12101	12101					-0.04680912321487085
GPGPPYSSQAQ	11	Unmodified	_GPGPPYSSQAQ_					0	0	0			REV__nc|ENSG00000188848|Q6ZU67-2|BEND4	REV__nc|ENSG00000188848|Q6ZU67-2|BEND4	MULTI-MSMS	HCT116MG_D190212_S4	4	1088.5032958984375	1	1088.50071	1087.49344	0.52309	0.00056938	0.13584	0.00014786	0.65893	0.00071724	1088.5008533936696	29.829	0.88404	29.479	28.98	29.864	-0.34991					35	16	3	0	0	0	0.63066	1	10691	10691		32.037	1.4009	1	8877500	+		12595	13976	7401	7444	12102	12102					-0.04680912321487085
GPGPSPADPAG	11	Unmodified	_GPGPSPADPAG_					0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	MSMS	HCT116MG_D190212_S4	4	461.71697998046875	2	461.716882	921.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.516	1	17.346	16.846	17.846	-0.17047								0	0	0	0.93552	1	5816	5816		13.906	0.39817	1		+		12596	17233	7402	7445	12103	12103					-0.04464255413006413
GPGQVGHLN	9	Unmodified	_GPGQVGHLN_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant;RYR1|p.P3303Tfs*8|1|0.36|ENSG00000196218|chr19:38517571-38517572|-/C|frameshift_variant;RYR1|p.C1268Afs*4|1|0.14|ENSG00000196218|chr19:38473407-38473407|C/-|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	HCT116MG_D190212_S4	4	439.7276306152344	2	439.727584	877.440614	-0.38171	-0.00016785	0.049271	2.1666E-05	-0.33244	-0.00014618	439.7278526381531	15.727	0.44873	15.565	15.22	15.669	-0.16173					10	8	2	0	0	0	0.49914	1	5102	5102		16.942	0	1	491630			12597	6051	7403	7446	12104	12104					-0.003008255936151727
GPGQVGHLN	9	Unmodified	_GPGQVGHLN_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.D2713Tfs*33|1|0.11|ENSG00000196218|chr19:38504811-38504811|C/-|frameshift_variant;RYR1|p.P3303Tfs*8|1|0.36|ENSG00000196218|chr19:38517571-38517572|-/C|frameshift_variant;RYR1|p.C1268Afs*4|1|0.14|ENSG00000196218|chr19:38473407-38473407|C/-|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	439.727584	877.440614	0.12932	5.6864E-05	-0.16381	-7.2032E-05	-0.034494	-1.5168E-05	439.72751342695045	15.859	0.78086	15.944	15.404	16.185	0.085423	0.18969	-7.5166E-05	NaN	16.942	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1286900			12598	6051	7403	7446							-0.003008255936151727
GPGRPRVPKRP	11	Unmodified	_GPGRPRVPKRP_					0	0	0			REV__ENSG00000182450|ENST00000422670|KCNK4	REV__ENSG00000182450|ENST00000422670|KCNK4	MSMS	HCT116MG_D190212_S3	3	608.8709716796875	2	608.872905	1215.73126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.871	1	31.601	31.101	32.101	-0.27028								0	0	0	0.95521	1	11660	11660		3.5965	0.60125	1		+		12599	13718	7404	7447	12105	12105					0.13202118122262618
GPGSGPGAL	9	Unmodified	_GPGSGPGAL_					0	0	0		BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN;BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.K636Efs*7|1|0.19|ENSG00000164061|chr3:49650998-49650999|AA/-|frameshift_variant;BSN|p.T1327Pfs*44|1|0.07|ENSG00000164061|chr3:49653530-49653530|C/-|frameshift_variant;BSN|p.L1354Sfs*17|1|0.24|ENSG00000164061|chr3:49653612-49653612|C/-|frameshift_variant;BSN|p.P430L|1|0.26|ENSG00000164061|chr3:49642923-49642923|C/T|missense_variant	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	356.6846923828125	2	356.684853	711.355153	-0.10587	-3.7762E-05	-0.034357	-1.2255E-05	-0.14023	-5.0017E-05	356.68475653497427	24.905	0.25916	24.53	24.4	24.66	-0.37521					7	4	2	0	0	0	0.30509	1	8968	8968		30.225	3.8835	1	31999000			12600	284	7405	7448	12106	12106					-0.012069907792920276
GPGSIPLQDQH	11	Unmodified	_GPGSIPLQDQH_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000563670.1_1_15:28517333-28518245:-|nuORF;HERC2|p.G2202Afs*8|1|0.2|ENSG00000128731|chr15:28213923-28213923|C/-|frameshift_variant	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	HCT116MG_D190212_S4	4	574.2718505859375	2	574.78837	1147.56219	0.26637	0.0001531	0.57519	0.00033061	0.84155	0.00048371	574.7886031599301	17.923	0.67542	17.748	17.324	18	-0.17501					16	12	2	0	0	0	0.36231	1	6046	6046		13.042	1.4022	1	1656300			12601	3011	7406	7449	12107	12107					-0.005692480217476259
GPGSLATEPH	10	Unmodified	_GPGSLATEPH_					0	0	0		ENST00000488881.1_1_2:220246699-220249162:-|nuORF;nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP	ENST00000488881.1_1_2:220246699-220249162:-|nuORF	ENST00000488881.1_1_2:220246699-220249162:-|nuORF	MSMS	HCT116MG_D190212_S1	1	482.751708984375	2	483.237981	964.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.643	1	15.643	15.143	16.143	0								0	0	0	0.94107	1	5211	5211		6.7232	2.3939	1				12602	2823	7407	7450	12108	12108					-0.022242800046115008
GPGSLVEFSRD	11	Unmodified	_GPGSLVEFSRD_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19;KCTD19|p.V768Rfs*12|1|0.33|ENSG00000168676|chr16:67291754-67291755|-/G|frameshift_variant;KCTD19|p.V768Wfs*38|2|0.36|ENSG00000168676|chr16:67291755-67291755|G/-|frameshift_variant	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MSMS	HCT116MG_D190212_S2	2	582.2880249023438	2	582.288202	1162.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.637	1	18.274	17.774	18.774	-0.36325								0	0	0	0.93552	1	6417	6417		13.906	0	1				12603	5024	7408	7451	12109	12109					-0.012926677416317034
GPGSPPGAP	9	Unmodified	_GPGSPPGAP_					0	0	0		ENST00000587013.5_1_19:38882915-38886805:+|nuORF	ENST00000587013.5_1_19:38882915-38886805:+|nuORF	ENST00000587013.5_1_19:38882915-38886805:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	736.363037109375	1	736.36243	735.355153	0.41165	0.00030312	0.40293	0.0002967	0.81458	0.00059982	736.3625716494547	19.661	0.88557	19.721	19.229	20.115	0.05983					31	16	3	0	0	0	0.02256	1	6757	6757		93.883	4.4566	1	16825000			12604	9003	7409	7452	12110	12110					-0.02310990779290023
GPGTGIGSGP	10	Unmodified	_GPGTGIGSGP_					0	0	0			REV__ENST00000532383.5_1_11:10823583-10825134:-|nuORF	REV__ENST00000532383.5_1_11:10823583-10825134:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	799.395263671875	1	799.394458	798.387182	0.68043	0.00054393	0.36942	0.00029531	1.0498	0.00083924	799.3946435832946	20.237	0.31236	20.285	20.155	20.468	0.048107					8	5	2	0	0	0	0.14986	1	7003	7003		64.236	14.303	1	3223600	+		12605	10450	7410	7453	12111	12111					-0.020076230961308283
GPGTPQEPP	9	Unmodified	_GPGTPQEPP_					0	0	0			REV__ENSG00000183379|ENST00000331628|SYNDIG1L	REV__ENSG00000183379|ENST00000331628|SYNDIG1L	MULTI-MSMS	HCT116MG_D190212_S3	3	879.4220581054688	1	879.420673	878.413397	0.76931	0.00067655	-0.35415	-0.00031145	0.41516	0.0003651	879.4209223705436	24.659	1.041	24.575	23.82	24.861	-0.083694					26	19	2	0	0	0	0.14972	1	8850	8850		48.346	0	1	2613300	+		12606	13760	7411	7454	12112	12112					-0.030673539246663495
GPGVPPATFAP	11	Unmodified	_GPGVPPATFAP_					0	0	0			REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	REV__ENST00000543035.5_2_12:3068990-3120181:+|nuORF	MSMS	HCT116MG_D190212_S3	3	505.7668151855469	2	505.768917	1009.52328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.645	1	29.408	28.908	29.908	-0.23655								0	0	0	0.93374	1	10778	10778		14.838	2.3067	1		+		12607	16381	7412	7455	12113	12113					0.01890071414504746
GPGWGGAH	8	Unmodified	_GPGWGGAH_					0	0	0		VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant;VARS|p.L801Wfs*10|1|0.3|ENSG00000204394|chr6:31781707-31781707|A/-|frameshift_variant;ENSG00000204394|ENST00000375663|VARS1	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	VARS|p.A620Pfs*25|1|0.23|ENSG00000204394|chr6:31782750-31782750|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	738.3312377929688	1	738.331799	737.324522	0.67096	0.00049539	-1.2787	-0.00094414	-0.60778	-0.00044875	738.330544799495	28.732	0.26017	28.523	28.382	28.642	-0.20923					7	4	2	0	0	0	0.84415	1	10416	10416		6.3541	0	1	5984100			12608	6331	7413	7456	12114	12114					-0.05464724373678109
GPGWGQSAHRP	11	Unmodified	_GPGWGQSAHRP_					0	0	0			REV__ENST00000586704.5_1_19:1012301-1012394:-|nuORF	REV__ENST00000586704.5_1_19:1012301-1012394:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	575.7355346679688	2	575.281046	1148.54754	-0.042984	-2.4728E-05	-0.56838	-0.00032698	-0.61136	-0.0003517	575.2805651029466	16.904	1.008	16.738	16.221	17.229	-0.16664					40	19	3	0	0	0	0.70377	1	5753	5753		20.415	3.3016	1	2704400	+		12609	16659	7414	7457	12115	12115					-0.020792753792648
GPGWGQSAHRP	11	Unmodified	_GPGWGQSAHRP_					0	0	0			REV__ENST00000586704.5_1_19:1012301-1012394:-|nuORF	REV__ENST00000586704.5_1_19:1012301-1012394:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	574.7885131835938	2	575.281046	1148.54754	-0.042984	-2.4728E-05	-0.56838	-0.00032698	-0.61136	-0.0003517	575.2805651029466	16.904	1.008	16.738	16.221	17.229	-0.16664					40	19	3	0	0	0	0.35292	1	5729	5729		15.248	3.0078	1	2704400	+		12610	16659	7414	7457	12116	12116					-0.020792753792648
GPGYPAPPPPP	11	Unmodified	_GPGYPAPPPPP_					0	0	0			REV__ENSG00000171201|ENST00000304915|SMR3B	REV__ENSG00000171201|ENST00000304915|SMR3B	MULTI-MSMS	HCT116MG_D190212_S3	3	524.2702026367188	2	523.768917	1045.52328	0.22573	0.00011823	2.5429	0.0013319	2.7686	0.0014501	524.2707249275135	20.55	0.52061	20.584	20.298	20.818	0.034473					13	9	2	0	0	0	0.66267	1	7109	7109		28.487	0	1	2311400	+		12611	13334	7415	7458	12117	12117					0.0023407141452480573
GPGYPAPPPPP	11	Unmodified	_GPGYPAPPPPP_					0	0	0			REV__ENSG00000171201|ENST00000304915|SMR3B	REV__ENSG00000171201|ENST00000304915|SMR3B	MULTI-SECPEP	HCT116MG_D190212_S3	3	523.7816162109375	2	523.768917	1045.52328	0.22573	0.00011823	2.5429	0.0013319	2.7686	0.0014501	524.2707249275135	20.55	0.52061	20.584	20.298	20.818	0.034473					13	9	2	0	0	0	0.298	1	7059	7059		36.044	1.9418	1	2311400	+		12612	13334	7415	7458	12118	12118					0.0023407141452480573
GPHPSWACP	9	Unmodified	_GPHPSWACP_					0	0	0			REV__ENST00000355849.9_1_8:136469990-136470134:+|nuORF	REV__ENST00000355849.9_1_8:136469990-136470134:+|nuORF	MSMS	HCT116MG_D190212_S3	3	476.1985168457031	2	476.210712	950.406871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.294	1	16.379	15.879	16.879	0.085424								0	0	0	0.76641	1	5396	5396		13.508	4.9146	1		+		12613	15043	7416	7459	12119	12119					-0.07031570357037253
GPHSSRPGE	9	Unmodified	_GPHSSRPGE_					0	0	0			REV__ENST00000434116.6_1_15:65904242-65904413:+|nuORF	REV__ENST00000434116.6_1_15:65904242-65904413:+|nuORF	MSMS	HCT116MG_D190212_S4	4	462.2189025878906	2	462.220123	922.425693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.667	1	20.466	19.966	20.966	-0.20133								0	0	0	0.71969	1	7089	7089		18.135	4.6271	1		+		12614	15603	7417	7460	12120	12120					-0.03862317461607745
GPHTDGSLEKE	11	Unmodified	_GPHTDGSLEKE_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-MSMS	HCT116MG_D190212_S3	3	585.9844360351562	2	585.275292	1168.53603	0.20449	0.00011968	0.33759	0.00019758	0.54208	0.00031727	585.275602438081	17.684	0.83243	17.765	17.273	18.106	0.081358					17	15	2	0	0	0	0.73364	1	5914	5914		9.3831	0.63772	1	1324800	+		12615	10850	7418	7461	12121	12121					-0.041495619838769926
GPISSPAAVPQ	11	Unmodified	_GPISSPAAVPQ_					0	0	0			REV__ENST00000359867.7_2_22:38687065-38687464:-|nuORF	REV__ENST00000359867.7_2_22:38687065-38687464:-|nuORF	MSMS	HCT116MG_D190212_S4	4	512.276611328125	2	512.277106	1022.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.78	1	23.527	23.027	24.027	-0.25304								0	0	0	0.9387	1	8344	8344		12.241	0.60036	1		+		12616	15076	7419	7462	12122	12122					0.029291525806115715
GPKAAAVP	8	Unmodified	_GPKAAAVP_					0	0	0			REV__ENST00000458407.1_1_2:133110346-133110880:+|nuORF	REV__ENST00000458407.1_1_2:133110346-133110880:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	710.4171142578125	1	710.419551	709.412274	0.63324	0.00044987	-4.3756	-0.0031085	-3.7424	-0.0026587	710.4158526606694	44.33	0.37508	44.33	44.141	44.516	0					10	6	2	0	0	0	0.84415	1	16772	16772		6.3541	3.4649	1	15244000	+		12617	15765	7420	7463	12123	12123					0.04594476497084088
GPKAAAVP	8	Unmodified	_GPKAAAVP_					0	0	0			REV__ENST00000458407.1_1_2:133110346-133110880:+|nuORF	REV__ENST00000458407.1_1_2:133110346-133110880:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	710.419551	709.412274	0.63324	0.00044987	-4.3756	-0.0031085	-3.7424	-0.0026587	710.4158526606694	44.33	0.37508	44.33	44.141	44.516	0	0	0	NaN	6.3541	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15244000	+		12618	15765	7420	7463							0.04594476497084088
GPKAHIRK	8	Unmodified	_GPKAHIRK_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50;ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	HCT116MG_D190212_S1	1	453.78564453125	2	453.785236	905.555919	-0.003127	-1.419E-06	0.10254	4.6531E-05	0.099412	4.5112E-05	453.78537491119585	60.892	1.7061	60.892	60.698	62.404	0					50	32	3	0	0	0	0.8672	1	23481	23481		2.3027	1.6124	1	103260000			12619	1693	7421	7464	12124	12124					0.09936323328042818
GPKAQPQEEGP	11	Unmodified	_GPKAQPQEEGP_					0	0	0		ENST00000486831.5_1_3:138189538-138191915:+|nuORF;ESYT3|p.C770Sfs*5|1|0.25|ENSG00000158220|chr3:138473607-138473607|G/-|frameshift_variant;ESYT3|p.F827Lfs*7|2|0.28|ENSG00000158220|chr3:138476230-138476230|T/-|frameshift_variant;ENSG00000158220|ENST00000389567|ESYT3	ENST00000486831.5_1_3:138189538-138191915:+|nuORF	ENST00000486831.5_1_3:138189538-138191915:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	568.8902587890625	2	569.280377	1136.5462	0.2132	0.00012137	-0.060286	-3.432E-05	0.15291	8.7049E-05	569.2802152889063	19.336	0.26012	19.336	19.183	19.443	0					7	4	2	0	0	0	0.73364	1	6646	6646		9.3831	1.473	1	1281800			12620	4360	7422	7465	12125	12125					-0.01660954258682068
GPKEAGPPA	9	Unmodified	_GPKEAGPPA_					0	0	0		N4BP3|p.Y248Tfs*50|2|0.19|ENSG00000145911|chr5:178120583-178120583|C/-|frameshift_variant;ENSG00000145911|ENST00000274605|N4BP3	N4BP3|p.Y248Tfs*50|2|0.19|ENSG00000145911|chr5:178120583-178120583|C/-|frameshift_variant	N4BP3|p.Y248Tfs*50|2|0.19|ENSG00000145911|chr5:178120583-178120583|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	412.21771240234375	2	412.21906	822.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.834	1	32.455	31.955	32.955	-0.37924								0	0	0	0.76902	1	11974	11974		4.3292	0.38484	1				12621	3931	7423	7466	12126	12126					0.005252538005720453
GPKGDTGPSGP	11	Unmodified	_GPKGDTGPSGP_					0	0	0		ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	MSMS	HCT116MG_D190212_S3	3	485.235595703125	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.359	1	21.378	20.878	21.878	0.018446								0	0	0	0.85804	1	7439	7439		25.399	2.2509	1				12622	3247	7424	7467	12127	12127					-0.029165838672270183
GPKGDTGPSGP	11	Unmodified	_GPKGDTGPSGP_					0	0	0		ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	MULTI-SECPEP	HCT116MG_D190212_S3	3	484.7610778808594	2	485.235439	968.456324	0.08427	4.0891E-05	-0.23998	-0.00011645	-0.15571	-7.5557E-05	485.2352714685404	22.836	0.19617	22.817	22.647	22.844	-0.018869					5	3	2	0	0	0	0.34227	1	7966	7966		25.399	1.3787	1	2743000			12623	3247	7424	7467	12128	12128					-0.029165838672270183
GPKGETGPA	9	Unmodified	_GPKGETGPA_					0	0	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	MULTI-MSMS	HCT116MG_D190212_S4	4	813.409912109375	1	813.410108	812.402832	0.89248	0.00072596	-0.11566	-9.4076E-05	0.77683	0.00063188	813.4097669179595	32.562	0.62288	32.183	31.897	32.52	-0.37924					14	11	2	0	0	0	0.36396	1	11892	11892		24.674	5.2349	1	2294200			12624	2806	7425	7468	12129	12129					-0.01087336579098519
GPKGGRGAR	9	Unmodified	_GPKGGRGAR_					0	0	0		ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	428.249267578125	2	428.249018	854.483482	0.23753	0.00010172	0.031834	1.3633E-05	0.26936	0.00011535	428.24890742058653	48.353	0.98886	48.037	47.359	48.348	-0.31596					21	18	2	0	0	0	0.74917	1	18177	18177		1.8442	0	1	5055300			12625	6633	7426	7469	12130	12130					0.05041989254459622
GPKGGRGAR	9	Unmodified	_GPKGGRGAR_					0	0	0		ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	428.249018	854.483482	0.1489	6.3766E-05	-0.02041	-8.7404E-06	0.12849	5.5025E-05	428.2489378348724	48.284	0.74656	47.917	47.419	48.166	-0.36727	-0.060194	-1.6978E-05	NaN	1.8442	22	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10397000			12626	6633	7426	7469							0.05041989254459622
GPKGNGRPGAP	11	Unmodified	_GPKGNGRPGAP_					0	0	0			REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	504.7528381347656	2	504.27269	1006.53083	0.25666	0.00012942	-1.1296	-0.00056964	-0.87296	-0.00044021	504.27212924471957	22.932	0.30025	22.913	22.751	23.051	-0.018869					9	5	3	0	0	0	0.71887	1	8014	8014		14.838	1.3304	1	5025700	+		12627	16639	7427	7470	12131	12131					0.02782223734800482
GPKGNGRPGAP	11	Unmodified	_GPKGNGRPGAP_					0	0	0			REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	504.7528381347656	2	504.27269	1006.53083	0.25666	0.00012942	-1.1296	-0.00056964	-0.87296	-0.00044021	504.27212924471957	22.932	0.30025	22.913	22.751	23.051	-0.018869					9	5	3	0	0	0	0.35053	1	8014	8014		14.838	1.3304	1	5025700	+		12628	16639	7427	7470	12132	12132					0.02782223734800482
GPKGPEGAPG	10	Unmodified	_GPKGPEGAPG_					0	0	0			REV__COL9A1|p.P396Qfs*33|1|0.39|ENSG00000112280|chr6:70270324-70270324|G/-|frameshift_variant	REV__COL9A1|p.P396Qfs*33|1|0.39|ENSG00000112280|chr6:70270324-70270324|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	433.7215576171875	2	433.721967	865.429381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.993	1	24.715	24.215	25.215	-0.27817								0	0	0	0.82636	1	8835	8835		25.399	0	1		+		12629	10248	7428	7471	12133	12133					-0.008716476877566492
GPKGWPLVVF	10	Unmodified	_GPKGWPLVVF_					0	0	0			REV__ENSG00000169064|ENST00000675490|ZBBX	REV__ENSG00000169064|ENST00000675490|ZBBX	MSMS	HCT116MG_D190212_S4	4	550.2171020507812	2	550.318577	1098.6226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.602	1	15.44	14.94	15.94	-0.16173								0	0	0	0.94107	1	5042	5042		6.7232	0.99131	1		+		12630	13220	7429	7472	12134	12134					0.07723514099257045
GPKKSVSS	8	Unmodified	_GPKKSVSS_					0	0	0			REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1	REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1	MSMS	HCT116MG_D190212_S4	4	395.2266540527344	2	395.226885	788.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.357	1	46.987	46.487	47.487	-0.37038								0	0	0	0.8837	1	17515	17515		3.9444	1.8846	1		+		12631	14224	7430	7473	12135	12135					0.03653540317623083
GPKKVAPIQRR	11	Unmodified	_GPKKVAPIQRR_					0	0	0		ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	MULTI-MSMS	HCT116MG_D190212_S2	2	625.3952026367188	2	625.396213	1248.77787	0.58174	0.00036382	-1.334	-0.00083428	-0.75225	-0.00047046	625.3950040885444	59.68	0.43201	59.52	59.312	59.744	-0.16012					14	8	2	0	0	0	0.74191	1	23132	23132		1.1933	0.735	1	9905100			12632	6132	7431	7474	12136	12136					0.1634355795351894
GPKLAVTV	8	Unmodified	_GPKLAVTV_					0	0	0			REV__ENST00000311635.11_3_16:87363114-87363159:-|nuORF	REV__ENST00000311635.11_3_16:87363114-87363159:-|nuORF	MSMS	HCT116MG_D190212_S4	4	392.7489013671875	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.308	1	53.984	53.484	54.484	-0.32349								0	0	0	0.8837	1	20302	20302		2.3027	0	1		+		12633	14836	7432	7475	12137	12137					0.08503605219698329
GPKLTKIA	8	Unmodified	_GPKLTKIA_					0	0	0			REV__ENSG00000197122|ENST00000373578|SRC	REV__ENSG00000197122|ENST00000373578|SRC	MSMS	HCT116MG_D190212_S1	1	414.2696838378906	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.526	1	57.526	57.026	58.026	0								0	0	0	0.8837	1	22138	22138		0.69038	0	1		+		12634	14057	7433	7476	12138	12138					0.10743580628070504
GPKPGHPF	8	Unmodified	_GPKPGHPF_					0	0	0			REV__nc|ENSG00000076685|P49902-2|NT5C2	REV__nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	HCT116MG_D190212_S2	2	418.7242126464844	2	418.724313	835.434072	0.062309	2.609E-05	0.23573	9.8708E-05	0.29804	0.0001248	418.7243133928448	27.038	0.41973	26.686	26.503	26.923	-0.35254					16	7	3	0	0	0	0.73076	1	9806	9806		19.439	16.55	1	148490000	+		12635	10822	7434	7477	12139	12139					0.00977281245661743
GPKPGHPF	8	Unmodified	_GPKPGHPF_					0	0	0			REV__nc|ENSG00000076685|P49902-2|NT5C2	REV__nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	HCT116MG_D190212_S2	2	836.4419555664062	1	836.441349	835.434072	0.82508	0.00069013	-0.35744	-0.00029898	0.46763	0.00039115	836.4410400706279	27.038	0.26431	26.686	26.554	26.818	-0.35254					6	4	2	0	0	0	0.66848	1	9830	9830		26.341	26.341	1	18329000	+		12636	10822	7434	7477	12140	12140					0.00977281245661743
GPKRGKHA	8	Unmodified	_GPKRGKHA_					0	0	0		ENSG00000187754|ENST00000298181|SSX7;nc|ENSG00000290708|Q7RTT3|SSX9P;ENSG00000269791|ENST00000595235|SSX4B;ENSG00000268009|ENST00000595689|SSX4;ENSG00000165583|ENST00000347757|SSX5;ENSG00000126752|ENST00000376919|SSX1;nc|ENSG00000165583|O60225-2|SSX5;nc|ENSG00000171483|Q7RTT6|SSX6P	ENSG00000187754|ENST00000298181|SSX7;nc|ENSG00000171483|Q7RTT6|SSX6P	ENSG00000187754|ENST00000298181|SSX7	MSMS	HCT116MG_D190212_S4	4	425.75274658203125	2	425.753936	849.493319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.133	1	48.768	48.268	49.268	-0.365								0	0	0	0.8837	1	18214	18214		0.69038	0.088878	1				12637	5957;9547	7435	7478	12141	12141					0.06255177259845368
GPKRVRHVRLN	11	Unmodified	_GPKRVRHVRLN_					0	0	0			REV__ENST00000610187.1_1_9:136997441-137000810:-|nuORF	REV__ENST00000610187.1_1_9:136997441-137000810:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	666.411865234375	2	666.410186	1330.80582	0.63003	0.00041986	1.3247	0.0008828	1.9547	0.0013027	666.4107990661322	60.962	1.5018	60.962	60.85	62.352	0					41	28	2	0	0	0	0.74191	1	23764	23764		1.1933	0.735	1	11404000	+		12638	16793	7436	7479	12142	12142					0.15364880933657332
GPKSKQPKKI	10	Unmodified	_GPKSKQPKKI_					0	0	0			REV__GRIA2|p.F552Lfs*8|2|0.36|ENSG00000120251|chr4:157336555-157336555|T/-|frameshift_variant;REV__nc|ENSG00000155511|P42261-3|GRIA1	REV__nc|ENSG00000155511|P42261-3|GRIA1	MSMS	HCT116MG_D190212_S3	3	370.9037780761719	3	370.904636	1109.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.826	1	47.511	47.011	48.011	-0.31525								0	0	0	0.96404	1	17971	17971		1.5923	0.52082	1		+		12639	12702;11690	7437	7480	12143	12143					0.14161973048021537
GPKSMEVS	8	Unmodified	_GPKSMEVS_					0	0	0		ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1	ENST00000519278.5_1_8:134251123-134266883:-|nuORF	ENST00000519278.5_1_8:134251123-134266883:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	418.26470947265625	2	417.704928	833.395304	-0.0081571	-3.4072E-06	-0.15783	-6.5928E-05	-0.16599	-6.9335E-05	417.7046203175294	28.385	0.20706	28.055	27.926	28.133	-0.32987					6	3	2	0	0	0	0.31855	1	10300	10300		2.0598	1.3694	1	4702500			12640	1933	7438	7481	12144	12144					-0.028058121710273554
GPKTSQPP	8	Unmodified	_GPKTSQPP_					0	0	0			REV__nc|ENSG00000153071|P98082-3|DAB2	REV__nc|ENSG00000153071|P98082-3|DAB2	MSMS	HCT116MG_D190212_S4	4	406.2199401855469	2	406.21906	810.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.339	1	33.953	33.453	34.453	-0.38558								0	0	0	0.8837	1	12535	12535		6.3541	0	1		+		12641	12642	7439	7482	12145	12145					0.010772538005653587
GPLARAAGH	9	Unmodified	_GPLARAAGH_					0	0	0			REV__ENST00000300584.7_1_15:78346464-78369803:-|nuORF	REV__ENST00000300584.7_1_15:78346464-78369803:-|nuORF	MSMS	HCT116MG_D190212_S4	4	425.23876953125	2	425.238119	848.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.208	1	38.827	38.327	39.327	-0.38055								0	0	0	0.7676	1	14398	14398		9.3474	2.9933	1		+		12642	14778	7440	7483	12146	12146					0.0313918450589199
GPLCHLPPP	9	Unmodified	_GPLCHLPPP_					0	0	0			REV__ENST00000428294.5_1_22:38743544-38776397:-|nuORF	REV__ENST00000428294.5_1_22:38743544-38776397:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	466.7532043457031	2	465.746931	929.479308	0.30416	0.00014166	3.753	0.0017479	4.0571	0.0018896	465.7483493103492	21.808	0.62561	21.809	21.677	22.302	0.00074577					17	11	3	0	0	0	0.54041	1	7699	7699		14.582	2.0501	1	2577100	+		12643	15568	7441	7484	12147	12147					0.011747637165285596
GPLCWRGP	8	Unmodified	_GPLCWRGP_					0	0	0			REV__ENST00000498406.1_1_22:21355062-21355995:-|nuORF	REV__ENST00000498406.1_1_22:21355062-21355995:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.22442626953125	2	443.223623	884.432692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.381	1	17.381	16.881	17.881	0								0	0	0	0.8837	1	5912	5912		10.183	1.5901	1		+		12644	15867	7442	7485	12148	12148					-0.014146761147571851
GPLEAGPA	8	Unmodified	_GPLEAGPA_					0	0	0			REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF	REV__ENST00000544802.5_1_7:72569162-72589455:+|nuORF	MSMS	HCT116MG_D190212_S4	4	356.1925048828125	2	356.187229	710.359904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.891	1	24.622	24.122	25.122	-0.26881								0	0	0	0.8837	1	8794	8794		11.114	0	1		+		12645	16389	7443	7486	12149	12149					-0.006861066365331681
GPLGPEGPR	9	Unmodified	_GPLGPEGPR_					0	0	0			REV__nc|ENSG00000139219|P02458-1|COL2A1;REV__COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	REV__nc|ENSG00000139219|P02458-1|COL2A1	MULTI-MSMS	HCT116MG_D190212_S3	3	440.23779296875	2	440.237784	878.461016	0.082777	3.6442E-05	0.13476	5.9326E-05	0.21754	9.5768E-05	440.2377423913788	20.133	1.8223	20.181	19.478	21.3	0.048107					58	34	3	0	0	0	0.023938	1	7032	7032		92.491	0	1	12899000	+		12646	12253;10242	7444	7487	12150	12150					0.016923450661806783
GPLGPEGPR	9	Unmodified	_GPLGPEGPR_					0	0	0			REV__nc|ENSG00000139219|P02458-1|COL2A1;REV__COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	REV__nc|ENSG00000139219|P02458-1|COL2A1	MULTI-MSMS	HCT116MG_D190212_S4	4	440.2377014160156	2	440.237784	878.461016	0.27488	0.00012101	-0.044888	-1.9762E-05	0.22999	0.00010125	440.2376601685251	20.458	1.2468	20.257	19.573	20.819	-0.20133					48	23	3	0	0	0	0.031089	2	7055	6833;7055		85.272	0	1	9457800	+		12647	12253;10242	7444	7487	12151;12152	12152					0.016923450661806783
GPLGRDPPQ	9	Unmodified	_GPLGRDPPQ_					0	0	0		ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;CDK18|p.T391Qfs*8|1|0.36|ENSG00000117266|chr1:205529327-205529327|C/-|frameshift_variant	ENST00000504648.5_1_1:205492597-205500503:+|nuORF	ENST00000504648.5_1_1:205492597-205500503:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	468.74822998046875	2	468.748516	935.482479	0.13385	6.2742E-05	0.20686	9.6967E-05	0.34071	0.00015971	468.74851311004244	20.329	0.98914	20.378	19.999	20.988	0.048109					26	18	2	0	0	0	0.15273	1	7017	7017		47.749	3.9763	1	3118300			12648	2566	7445	7488	12153	12153					0.01215730094884293
GPLGRDPPQ	9	Unmodified	_GPLGRDPPQ_					0	0	0		ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;CDK18|p.T391Qfs*8|1|0.36|ENSG00000117266|chr1:205529327-205529327|C/-|frameshift_variant	ENST00000504648.5_1_1:205492597-205500503:+|nuORF	ENST00000504648.5_1_1:205492597-205500503:+|nuORF	MSMS	HCT116MG_D190212_S4	4	468.748291015625	2	468.748516	935.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.516	1	20.315	19.815	20.815	-0.20133								0	0	0	0.49326	1	7028	7028		29.082	2.8134	1				12649	2566	7445	7488	12154	12154					0.01215730094884293
GPLGREGPP	9	Unmodified	_GPLGREGPP_					0	0	0			REV__nc|ENSG00000111799|Q99715-2|COL12A1;REV__ENSG00000134871|ENST00000360467|COL4A2;REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	HCT116MG_D190212_S2	2	440.23809814453125	2	440.237784	878.461016	0.10875	4.7875E-05	-0.20459	-9.0069E-05	-0.095843	-4.2194E-05	440.2376485723542	20.866	0.99713	20.484	19.862	20.859	-0.38288					31	18	2	0	0	0	0.023938	1	7264	7264		92.491	7.2194	1	10473000	+		12650	14187;12072;10222	7446	7489	12155	12155					0.016923450661806783
GPLGREGPP	9	Unmodified	_GPLGREGPP_					0	0	0			REV__nc|ENSG00000111799|Q99715-2|COL12A1;REV__ENSG00000134871|ENST00000360467|COL4A2;REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	440.237784	878.461016	0.082777	3.6442E-05	0.13476	5.9326E-05	0.21754	9.5768E-05	440.2377423913788	20.133	1.8223	20.181	19.478	21.3	0.048107	-0.12592	0.00013197	NaN	92.491	58	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12899000	+		12651	14187;12072;10222	7446	7489							0.016923450661806783
GPLGREGPP	9	Unmodified	_GPLGREGPP_					0	0	0			REV__nc|ENSG00000111799|Q99715-2|COL12A1;REV__ENSG00000134871|ENST00000360467|COL4A2;REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	440.237784	878.461016	0.27488	0.00012101	-0.044888	-1.9762E-05	0.22999	0.00010125	440.2376601685251	20.458	1.2468	20.257	19.573	20.819	-0.20133	-0.050428	-2.621E-05	NaN	92.491	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9457800	+		12652	14187;12072;10222	7446	7489							0.016923450661806783
GPLIYTTL	8	Unmodified	_GPLIYTTL_					0	0	0			REV__ENST00000508198.5_1_4:152330372-152330417:+|nuORF	REV__ENST00000508198.5_1_4:152330372-152330417:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	439.25360107421875	2	439.255111	876.49567	0.045849	2.014E-05	-1.8879	-0.00082926	-1.842	-0.00080912	439.2541017770546	21.797	0.31275	21.797	21.646	21.959	0					7	5	2	0	0	0	0.84759	1	7716	7716		5.7604	0.52976	1	2682000	+		12653	16158	7447	7490	12156	12156					0.05248168154275845
GPLLDSLYWT	10	Unmodified	_GPLLDSLYWT_					0	0	0		PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant;PKD2L1|p.T462Pfs*2|1|0.36|ENSG00000107593|chr10:100295096-100295096|T/-|frameshift_variant;nc|ENSG00000107593|Q9P0L9-4|PKD2L1;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1	PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant	PKD2L1|p.G255Afs*64|2|0.38|ENSG00000107593|chr10:100297574-100297574|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	582.798583984375	2	582.800414	1163.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.261	1	20.06	19.56	20.56	-0.20133								0	0	0	0.86471	1	6925	6925		20.454	2.3073	1				12654	2120	7448	7491	12157	12157					0.011025924118939656
GPLLKLLPL	9	Unmodified	_GPLLKLLPL_					0	0	0		nc|ENSG00000171763|Q9BVQ7-3|AFG2B;SPATA5L1|p.K477Nfs*8|1|0.39|ENSG00000171763|chr15:45410524-45410524|A/-|frameshift_variant;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1	nc|ENSG00000171763|Q9BVQ7-3|AFG2B	nc|ENSG00000171763|Q9BVQ7-3|AFG2B	MSMS	HCT116MG_D190212_S4	4	482.33392333984375	2	482.333696	962.652839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.496	1	31.125	30.625	31.625	-0.37026								0	0	0	0.7696	1	11433	11433		2.3027	0	1				12655	5209	7449	7492	12158	12158					0.17001872764456039
GPLPEEPRP	9	Unmodified	_GPLPEEPRP_					0	0	0		ENST00000318217.9_1_17:30821573-30821762:-|nuORF	ENST00000318217.9_1_17:30821573-30821762:-|nuORF	ENST00000318217.9_1_17:30821573-30821762:-|nuORF	MSMS	HCT116MG_D190212_S4	4	496.466064453125	2	496.263999	990.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.562	1	31.192	30.692	31.692	-0.37026								0	0	0	0.69272	1	11460	11460		19.439	1.304	1				12656	7088	7450	7493	12159	12159					0.01780883409139733
GPLPSPLLDP	10	Unmodified	_GPLPSPLLDP_					0	0	0			REV__ZNF524|p.P8L|1|0.36|ENSG00000171443|chr19:55602135-55602135|C/T|missense_variant	REV__ZNF524|p.P8L|1|0.36|ENSG00000171443|chr19:55602135-55602135|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	503.2840576171875	2	503.2844	1004.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.924	1	22.686	22.186	23.186	-0.23758								0	0	0	0.91906	1	8000	8000		11.64	4.3511	1		+		12657	18084	7451	7494	12160	12160					0.0521522472874949
GPLRPPPRGPR	11	Unmodified	_GPLRPPPRGPR_					0	0	0		GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	600.3599853515625	2	600.359631	1198.70471	0.54936	0.00032982	0.12923	7.7586E-05	0.6786	0.0004074	600.3596409578656	14.433	0.18982	14.114	14.002	14.192	-0.31952					5	3	2	0	0	0	0.74191	1	4752	4752		5.2969	0.96765	1	4751100			12658	9177	7452	7495	12161	12161					0.1133042923092944
GPLSDDPLS	9	Unmodified	_GPLSDDPLS_					0	0	0		TET1|p.E1973G|1|0.09|ENSG00000138336|chr10:68691321-68691321|A/G|missense_variant	TET1|p.E1973G|1|0.09|ENSG00000138336|chr10:68691321-68691321|A/G|missense_variant	TET1|p.E1973G|1|0.09|ENSG00000138336|chr10:68691321-68691321|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	450.71875	2	450.71909	899.423627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.585	1	27.264	26.764	27.764	-0.32157								0	0	0	0.71969	1	9882	9882		18.135	1.1927	1				12659	18265	7453	7496	12162	12162					-0.030107909901062158
GPLSRTHRSWA	11	Unmodified	_GPLSRTHRSWA_					0	0	0		ENST00000455981.1_1_9:132044952-132045312:+|nuORF	ENST00000455981.1_1_9:132044952-132045312:+|nuORF	ENST00000455981.1_1_9:132044952-132045312:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	634.3361206054688	2	634.336353	1266.65815	0.16929	0.00010738	-0.84887	-0.00053847	-0.67958	-0.00043108	634.3359515832158	17.596	0.20823	17.678	17.585	17.794	0.081358					5	3	2	0	0	0	0.73535	1	5945	5945		10.8	1.8233	1	2040700			12660	8022	7454	7497	12163	12163					0.035489446089968624
GPLTQRISLS	10	Unmodified	_GPLTQRISLS_					0	0	0			REV__ENST00000401578.2_1_6:80776237-80776996:-|nuORF	REV__ENST00000401578.2_1_6:80776237-80776996:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	537.253662109375	2	536.31148	1070.60841	0.50803	0.00027246	0.31286	0.00016779	0.82089	0.00044025	536.3117227161363	23.961	0.15607	23.703	23.625	23.781	-0.25816					4	2	2	0	0	0	0.87801	1	8437	8437		3.9444	0.3479	1	1975000	+		12661	15395	7455	7498	12164	12164					0.07592816880332975
GPLVYIQEIIP	11	Unmodified	_GPLVYIQEIIP_					0	0	0		STXBP4|p.S141Ffs*4|1|0.17|ENSG00000166263|chr17:54999760-54999761|TT/-|frameshift_variant;STXBP4|p.K404Rfs*31|1|0.1|ENSG00000166263|chr17:55078095-55078095|A/-|frameshift_variant;ENSG00000166263|ENST00000376352|STXBP4	STXBP4|p.S141Ffs*4|1|0.17|ENSG00000166263|chr17:54999760-54999761|TT/-|frameshift_variant	STXBP4|p.S141Ffs*4|1|0.17|ENSG00000166263|chr17:54999760-54999761|TT/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	620.9942626953125	2	621.360639	1240.70673	0.47389	0.00029445	-2.2517	-0.0013991	-1.7778	-0.0011046	621.3575534109549	29.09	0.25627	28.774	28.657	28.914	-0.31613					6	4	2	0	0	0	0.36231	1	10618	10618		5.2969	0.39987	1	9835200			12662	4835	7456	7499	12165	12165					0.09600000405498577
GPLYYANKDF	10	Unmodified	_GPLYYANKDF_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MSMS	HCT116MG_D190212_S4	4	594.2936401367188	2	594.290214	1186.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.516	1	28.185	27.685	28.685	-0.33138								0	0	0	0.94107	1	10258	10258		6.7232	0.51738	1				12663	3900	7457	7500	12166	12166					-0.019945782479226182
GPMHQWVSY	9	Unmodified	_GPMHQWVSY_					0	0	0		nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENST00000434030.1_1_3:50311077-50311539:+|nuORF;ENST00000419007.5_1_3:50311077-50311539:+|nuORF;SEMA3B|p.R418Afs*41|1|0.4|ENSG00000012171|chr3:50274471-50274471|G/-|frameshift_variant;SEMA3B|p.R595Afs*16|1|0.43|ENSG00000012171|chr3:50275779-50275779|C/-|frameshift_variant	nc|ENSG00000012171|Q13214-2|SEMA3B	nc|ENSG00000012171|Q13214-2|SEMA3B	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7592163085938	2	552.750201	1103.48585	0.44167	0.00024413	-3.3822	-0.0018695	-2.9405	-0.0016254	552.747877360811	35.869	0.14373	35.569	35.482	35.626	-0.30041					4	2	2	0	0	0	0.49914	1	13220	13220		16.942	4.4107	1	2114100			12664	904	7458	7501	12167	12167					-0.06175343122754384
GPMLEWHHHSH	11	Unmodified	_GPMLEWHHHSH_					0	0	0		ENST00000496112.5_1_7:44251862-44252006:+|nuORF	ENST00000496112.5_1_7:44251862-44252006:+|nuORF	ENST00000496112.5_1_7:44251862-44252006:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	684.2029418945312	2	684.306738	1366.59892	0.42684	0.00029209	1.1911	0.00081508	1.6179	0.0011072	684.808517188136	17.667	0.20877	17.31	17.127	17.336	-0.35647					5	3	2	0	0	0	0.36553	1	5980	5980		0.35063	0	1	3837300			12665	8387	7459	7502	12168	12168					-0.06971274676834582
GPMLLPPP	8	Unmodified	_GPMLLPPP_					0	0	0			REV__ENST00000342572.12_1_17:80401154-80401304:-|nuORF	REV__ENST00000342572.12_1_17:80401154-80401304:-|nuORF	MSMS	HCT116MG_D190212_S1	1	411.2335510253906	2	411.233125	820.451696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.089	1	26.089	25.589	26.589	0								0	0	0	0.8837	1	9412	9412		11.114	0	1		+		12666	14983	7460	7503	12169	12169					0.034288604563016634
GPMSDFKN	8	Unmodified	_GPMSDFKN_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;ENST00000513115.1_1_5:14769063-14871556:-|nuORF	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	HCT116MG_D190212_S4	4	447.7195129394531	2	448.202553	894.390553	0.31804	0.00014255	-0.30334	-0.00013596	0.014704	6.5904E-06	448.2023902399723	20.465	0.83156	20.264	19.833	20.664	-0.20133					31	15	3	0	0	0	0.74206	1	7150	7150		18.135	5.6034	1	5451200			12667	4205	7461	7504	12170	12170					-0.06086696313786888
GPNLHSQLDET	11	Unmodified	_GPNLHSQLDET_					0	0	0			REV__ZBED4|p.I658Sfs*5|1|0.49|ENSG00000100426|chr22:49885628-49885628|A/-|frameshift_variant	REV__ZBED4|p.I658Sfs*5|1|0.49|ENSG00000100426|chr22:49885628-49885628|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	605.7875366210938	2	605.788566	1209.56258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.147	1	15.983	15.483	16.483	-0.16364								0	0	0	0.95196	1	5263	5263		5.2969	0.96765	1		+		12668	11086	7462	7505	12171	12171					-0.03381873092553178
GPNLQLQLNQS	11	Unmodified	_GPNLQLQLNQS_					0	0	0			REV__ENST00000414049.1_1_13:90014155-90014710:-|nuORF	REV__ENST00000414049.1_1_13:90014155-90014710:-|nuORF	MSMS	HCT116MG_D190212_S3	3	404.5507507324219	3	404.55081	1210.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.76	1	17.842	17.342	18.342	0.081358								0	0	0	0.95023	1	5988	5988		2.8433	0	1		+		12669	15460	7463	7506	12172	12172					0.03370996558101069
GPNRGRGPPP	10	Unmodified	_GPNRGRGPPP_					0	0	0			REV__nc|ENSG00000196123|Q68EN5-2|MATCAP1	REV__nc|ENSG00000196123|Q68EN5-2|MATCAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	503.1076965332031	2	502.772857	1003.53116	0.39029	0.00019623	-0.19637	-9.873E-05	0.19392	9.7497E-05	502.77264418324484	15.449	0.46863	15.535	15.3	15.769	0.085423					18	8	3	0	0	0	0.80458	1	5143	5143		11.64	11.64	1	11186000	+		12670	14002	7464	7507	12173	12173					0.0295364345465714
GPNRGRGPPP	10	Unmodified	_GPNRGRGPPP_					0	0	0			REV__nc|ENSG00000196123|Q68EN5-2|MATCAP1	REV__nc|ENSG00000196123|Q68EN5-2|MATCAP1	MULTI-SECPEP	HCT116MG_D190212_S3	3	503.2402038574219	2	502.772857	1003.53116	0.39029	0.00019623	-0.19637	-9.873E-05	0.19392	9.7497E-05	502.77264418324484	15.449	0.46863	15.535	15.3	15.769	0.085423					18	8	3	0	0	0	0.28114	1	5008	5008		26.884	12.302	1	11186000	+		12671	14002	7464	7507	12174	12174					0.0295364345465714
GPPADEPV	8	Unmodified	_GPPADEPV_					0	0	0			REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant	REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	391.18853759765625	2	391.189968	780.365384	-0.056483	-2.2096E-05	-2.8142	-0.0011009	-2.8707	-0.001123	391.1887929787492	47.09	0.31258	46.776	46.646	46.959	-0.31405					6	5	2	0	0	0	0.86564	1	17704	17704		2.5775	1.7838	1	4236600	+		12672	10935	7465	7508	12175	12175					-0.03358427844716516
GPPADEPV	8	Unmodified	_GPPADEPV_					0	0	0			REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant	REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	391.189968	780.365384	-0.03451	-1.35E-05	-2.9645	-0.0011597	-2.9991	-0.0011732	391.1887875667895	46.791	0.31165	46.791	46.595	46.907	0	0.051606	0.0001986	NaN	2.5775	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6697400	+		12673	10935	7465	7508							-0.03358427844716516
GPPADEPV	8	Unmodified	_GPPADEPV_					0	0	0			REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant	REV__FAT2|p.Y3462Tfs*16|1|0.37|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	391.189968	780.365384	0.59729	0.00023365	-3.4792	-0.001361	-2.8819	-0.0011274	391.18847948346627	46.762	0.66948	46.651	46.471	47.141	-0.11121	-0.088389	-0.00020406	NaN	2.5775	24	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571000000	+		12674	10935	7465	7508							-0.03358427844716516
GPPAPSCPGP	10	Unmodified	_GPPAPSCPGP_					0	0	0			REV__ENST00000355897.9_1_3:169755731-169797649:+|nuORF	REV__ENST00000355897.9_1_3:169755731-169797649:+|nuORF	MSMS	HCT116MG_D190212_S4	4	440.2052001953125	2	440.205096	878.395638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.722	1	27.401	26.901	27.901	-0.32157								0	0	0	0.43763	1	9937	9937		50.855	1.1861	1		+		12675	15044	7466	7509	12176	12176					-0.04842392451166688
GPPCVPLM	8	Unmodified	_GPPCVPLM_					0	0	0			REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	407.2038269042969	2	407.20351	812.392467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.877	1	11.702	11.202	12.202	-0.17441								0	0	0	0.8837	1	3670	3670		0.79363	0	1		+		12676	9815	7467	7510	12177	12177					-0.021233588295217487
GPPEGGPA	8	Unmodified	_GPPEGGPA_					0	0	0			REV__ENSG00000144119|ENST00000272520|C1QL2	REV__ENSG00000144119|ENST00000272520|C1QL2	MULTI-MSMS	HCT116MG_D190212_S4	4	681.3204345703125	1	681.320231	680.312954	0.48973	0.00033367	-0.082258	-5.6044E-05	0.40747	0.00027762	681.3201190958385	18.163	2.0736	17.988	16.547	18.621	-0.17501					65	39	2	0	0	0	0.13911	1	6155	6155		86.121	0	1	5053000	+		12677	12415	7468	7511	12178	12178					-0.03998966187668884
GPPELDSEQP	10	Unmodified	_GPPELDSEQP_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B;CEP170B|p.H885Tfs*28|2|0.25|ENSG00000099814|chr14:104886886-104886886|C/-|frameshift_variant	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-SECPEP	HCT116MG_D190212_S3	3	534.7823486328125	2	534.745836	1067.47712	0.44492	0.00023792	1.3354	0.00071412	1.7804	0.00095204	534.7456446535726	19.56	0.46885	19.62	19.542	20.011	0.05983					12	8	2	0	0	0	0.29734	1	6716	6716		5.7319	0	1	1894300			12678	1642	7469	7512	12179	12179					-0.053920382782280285
GPPESVSRYAP	11	Unmodified	_GPPESVSRYAP_					0	0	0			REV__SPATA2L|p.S344P|1|0.27|ENSG00000158792|chr16:89697579-89697579|A/G|missense_variant	REV__SPATA2L|p.S344P|1|0.27|ENSG00000158792|chr16:89697579-89697579|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	580.2889404296875	2	580.290745	1158.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.951	1	17.776	17.276	18.276	-0.17501								0	0	0	0.95113	1	5991	5991		5.7319	0.83484	1		+		12679	17585	7470	7513	12180	12180					-0.0060036387899344845
GPPGDPGSP	9	Unmodified	_GPPGDPGSP_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	780.352783203125	1	780.352259	779.344983	0.85938	0.00067062	0.049335	3.8499E-05	0.90871	0.00070912	780.3521794453936	29.158	3.8257	28.817	26.194	30.02	-0.34059					106	73	2	0	0	0	0.19218	1	9959	9959		42.095	0	1	7050900			12680	521	7471	7514	12181	12181					-0.05351598504512367
GPPGEPGPAG	10	Unmodified	_GPPGEPGPAG_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	418.20062255859375	2	418.200867	834.387182	0.05987	2.5037E-05	0.2	8.3641E-05	0.25987	0.00010868	418.2007803180499	18.809	1.2494	18.878	17.886	19.135	0.069159					44	23	3	0	0	0	0.2521	1	6237	6237		54.774	0	1	13187000			12681	510;527	7472	7515	12182	12182					-0.03663623096133506
GPPGEPGPAG	10	Unmodified	_GPPGEPGPAG_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	836.4005126953125	1	835.394458	834.387182	0.75292	0.00062899	0.049477	4.1332E-05	0.8024	0.00067032	835.3942670025442	18.813	0.93747	18.883	18.146	19.083	0.069159					24	17	2	0	0	0	0.65652	1	6290	6290		24.021	0	1	4801000			12682	510;527	7472	7515	12183	12183					-0.03663623096133506
GPPGEPGPAG	10	Unmodified	_GPPGEPGPAG_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	418.20001220703125	2	418.200867	834.387182	0.089795	3.7552E-05	0.28825	0.00012055	0.37805	0.0001581	418.2007981067774	18.961	1.2452	18.774	17.988	19.233	-0.18674					49	23	3	0	0	0	0.34998	1	6209	6209		46.021	0	1	9916300			12683	510;527	7472	7515	12184	12184					-0.03663623096133506
GPPGEPGPAG	10	Unmodified	_GPPGEPGPAG_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	835.39453125	1	835.394458	834.387182	0.67871	0.00056699	0.2554	0.00021336	0.93412	0.00078036	835.3945358614684	18.909	0.93459	18.725	18.092	19.027	-0.18478					29	17	2	0	0	0	0.047709	1	6312	6312		88.904	3.6316	1	3592200			12684	510;527	7472	7515	12185	12185					-0.03663623096133506
GPPGFPGAPGP	11	Unmodified	_GPPGFPGAPGP_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-SECPEP	HCT116MG_D190212_S3	3	475.2647705078125	2	475.74016	949.465767	0.33782	0.00016072	-3.2334	-0.0015383	-2.8956	-0.0013775	475.7380887378207	26.117	0.31292	25.989	25.807	26.12	-0.12795					7	5	2	0	0	0	0.32061	1	9305	9305		36.044	18.931	1	1804100			12685	4715	7473	7516	12186	12186					-0.010987707910544486
GPPGGRRK	8	Unmodified	_GPPGGRRK_					0	0	0			REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	824.4862060546875	1	824.484945	823.477669	0.98068	0.00080856	0.43564	0.00035918	1.4163	0.0011677	824.4851391037143	46.105	1.6621	46.105	45.503	47.165	0					66	31	5	0	0	0	0.8672	1	17350	17350		2.3027	0	1	5319800000	+		12686	10449	7474	7517	12187	12187					0.05886890742806372
GPPGGRRK	8	Unmodified	_GPPGGRRK_					0	0	0			REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	824.484945	823.477669	0.98068	0.00080856	0.43564	0.00035918	1.4163	0.0011677	824.4851391037143	46.105	1.6621	46.105	45.503	47.165	0	-0.14651	0.00010805	NaN	2.3027	66	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5319800000	+		12687	10449	7474	7517							0.05886890742806372
GPPGGRRK	8	Unmodified	_GPPGGRRK_					0	0	0			REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	824.484945	823.477669	1.0889	0.0008978	0.092132	7.5962E-05	1.1811	0.00097377	824.4848460905669	46.509	1.5969	46.398	45.957	47.554	-0.11121	0.14651	-0.00017516	NaN	2.3027	65	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1232100000	+		12688	10449	7474	7517							0.05886890742806372
GPPGIAGKA	9	Unmodified	_GPPGIAGKA_					0	0	0			REV__COL4A4|p.G1230Vfs*58|2|0.28|ENSG00000081052|chr2:227032170-227032170|C/-|frameshift_variant	REV__COL4A4|p.G1230Vfs*58|2|0.28|ENSG00000081052|chr2:227032170-227032170|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	384.22259521484375	2	384.224146	766.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.179	1	41.804	41.304	42.304	-0.37565								0	0	0	0.76967	1	15493	15493		2.0598	1.2661	1		+		12689	10239	7475	7518	12188	12188					0.041178615257990714
GPPGPAGPA	9	Unmodified	_GPPGPAGPA_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL11A1|p.V440G|1|0.4|ENSG00000060718|chr1:103018849-103018849|A/C|missense_variant;COL11A1|p.E441K|1|0.12|ENSG00000060718|chr1:103018847-103018847|C/T|missense_variant;COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant;COL11A1|p.P546Lfs*87|2|0.28|ENSG00000060718|chr1:103008511-103008511|C/-|frameshift_variant;COL11A1|p.G1096Vfs*102|1|0.07|ENSG00000060718|chr1:102940424-102940424|C/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant;nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant;ENST00000493991.5_1_12:48375847-48382223:-|nuORF;COL2A1|p.G741Wfs*29|1|0.36|ENSG00000139219|chr12:47982583-47982584|-/G|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant;REV__nc|ENSG00000139219|P02458-1|COL2A1;nc|ENSG00000139219|P02458-1|COL2A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	720.3671875	1	720.367515	719.360239	0.58389	0.00042062	-0.090941	-6.5511E-05	0.49295	0.00035511	720.3673482298933	21.897	0.41659	21.897	21.729	22.146	0.00074577					10	7	2	0	0	0	0.0062628	1	7668	7668		126.6	0	1	3369900			12690	513;514;510;12253;3613	7476	7519	12189	12189					-0.010666869166698234
GPPGPAGPA	9	Unmodified	_GPPGPAGPA_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL11A1|p.V440G|1|0.4|ENSG00000060718|chr1:103018849-103018849|A/C|missense_variant;COL11A1|p.E441K|1|0.12|ENSG00000060718|chr1:103018847-103018847|C/T|missense_variant;COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant;COL11A1|p.P546Lfs*87|2|0.28|ENSG00000060718|chr1:103008511-103008511|C/-|frameshift_variant;COL11A1|p.G1096Vfs*102|1|0.07|ENSG00000060718|chr1:102940424-102940424|C/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant;nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant;ENST00000493991.5_1_12:48375847-48382223:-|nuORF;COL2A1|p.G741Wfs*29|1|0.36|ENSG00000139219|chr12:47982583-47982584|-/G|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant;REV__nc|ENSG00000139219|P02458-1|COL2A1;nc|ENSG00000139219|P02458-1|COL2A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	720.3674926757812	1	720.367515	719.360239	0.81274	0.00058547	0.20473	0.00014748	1.0175	0.00073295	720.3674965664342	22.034	0.46747	21.806	21.624	22.091	-0.22777					13	8	2	0	0	0	0.0062628	1	7636	7636		126.6	0	1	3092200			12691	513;514;510;12253;3613	7476	7519	12190	12190					-0.010666869166698234
GPPGPEGAPG	10	Unmodified	_GPPGPEGAPG_					0	0	0			REV__COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	REV__COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	835.3948364257812	1	835.394458	834.387182	0.70713	0.00059073	0.059637	4.9821E-05	0.76677	0.00064055	835.3943059369324	19.127	0.52149	18.758	18.471	18.992	-0.3695					13	9	2	0	0	0	0.042428	1	6634	6634		92.822	3.9185	1	5353500	+		12692	10224	7477	7520	12191	12191					-0.03663623096133506
GPPGPEGAPG	10	Unmodified	_GPPGPEGAPG_					0	0	0			REV__COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	REV__COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	835.394458	834.387182	0.70713	0.00059073	0.059637	4.9821E-05	0.76677	0.00064055	835.3943059369324	19.127	0.52149	18.758	18.471	18.992	-0.3695	-0.030531	-3.3122E-05	NaN	92.822	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5353500	+		12693	10224	7477	7520							-0.03663623096133506
GPPGPSGEAGP	11	Unmodified	_GPPGPSGEAGP_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	462.1465759277344	2	461.716882	921.41921	0.16517	7.6261E-05	0.27957	0.00012908	0.44474	0.00020534	461.71689592098113	19.646	0.98823	19.271	18.569	19.558	-0.37503					28	18	2	0	0	0	0.72974	1	6575	6575		10.824	0.75	1	7356500			12694	510	7478	7521	12192	12192					-0.04464255412995044
GPPGPSGEAGP	11	Unmodified	_GPPGPSGEAGP_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	461.71673583984375	2	461.716882	921.41921	0.28587	0.00013199	-0.60034	-0.00027719	-0.31446	-0.00014519	461.71647548925694	20.405	0.31238	20.453	20.259	20.572	0.048107					8	5	2	0	0	0	0.62391	1	7077	7077		32.786	5.902	1	2452500			12695	510	7478	7521	12193	12193					-0.04464255412995044
GPPGPVLY	8	Unmodified	_GPPGPVLY_					0	0	0			REV__ENSG00000205978|ENST00000382554|NYNRIN	REV__ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MSMS	HCT116MG_D190212_S2	2	400.2209167480469	2	400.221072	798.42759	-0.22578	-9.0361E-05	0.084387	3.3773E-05	-0.14139	-5.6588E-05	400.22100241597303	30.645	0.46495	30.378	30.251	30.716	-0.26704					17	8	3	0	0	0	0.75115	1	11279	11279		17.087	2.5049	1	142060000	+		12696	14238	7479	7522	12194	12194					0.020313432942657528
GPPGQVGPVG	10	Unmodified	_GPPGQVGPVG_					0	0	0			REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	432.732177734375	2	432.732335	863.450116	0.20777	8.9908E-05	-0.20476	-8.8607E-05	0.0030058	1.3007E-06	432.73220098770753	30.241	0.26205	29.991	29.755	30.017	-0.24946					7	4	2	0	0	0	0.34998	1	10999	10999		46.021	2.1627	1	5638100	+		12697	10246	7480	7523	12195	12195					0.012929426919072284
GPPGQVGPVG	10	Unmodified	_GPPGQVGPVG_					0	0	0			REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	432.732335	863.450116	0.20777	8.9908E-05	-0.20476	-8.8607E-05	0.0030058	1.3007E-06	432.73220098770753	30.241	0.26205	29.991	29.755	30.017	-0.24946	0.028302	-4.5038E-05	NaN	46.021	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5638100	+		12698	10246	7480	7523							0.012929426919072284
GPPGRPRRGR	10	Unmodified	_GPPGRPRRGR_					0	0	0		AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant	AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant	AEBP1|p.G73Afs*219|1|0.17|ENSG00000106624|chr7:44104878-44104878|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	369.2183532714844	3	369.21984	1104.63769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.209	1	19.83	19.33	20.33	-0.37871								0	0	0	0.94345	1	7052	7052		6.1918	0	1				12699	68	7481	7524	12196	12196					0.08955818739832466
GPPGSPGEQGP	11	Unmodified	_GPPGSPGEQGP_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	490.22760009765625	2	490.227613	978.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.989	1	16.823	16.323	17.323	-0.16664								0	0	0	0.93552	1	5603	5603		13.906	2.2658	1				12700	513	7482	7525	12197	12197					-0.049408703842800605
GPPGVGKTTTA	11	Unmodified	_GPPGVGKTTTA_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MSMS	HCT116MG_D190212_S4	4	493.2691650390625	2	493.269281	984.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.803	1	29.454	28.954	29.954	-0.34921								0	0	0	0.84073	1	10778	10778		27.629	9.4825	1				12701	985	7483	7526	12198	12198					0.031128660635431515
GPPLASGL	8	Unmodified	_GPPLASGL_					0	0	0			REV__ENST00000562588.5_1_16:53737575-53737698:-|nuORF	REV__ENST00000562588.5_1_16:53737575-53737698:-|nuORF	MSMS	HCT116MG_D190212_S4	4	356.2793273925781	2	356.205421	710.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.456	1	58.168	57.668	58.668	-0.28826								0	0	0	0.8837	1	21971	21971		2.5775	0	1		+		12702	16501	7484	7527	12199	12199					0.02950770260201807
GPPLATEPD	9	Unmodified	_GPPLATEPD_					0	0	0			REV__DENND2C|p.S137A|1|0.32|ENSG00000175984|chr1:114625576-114625576|A/C|missense_variant	REV__DENND2C|p.S137A|1|0.32|ENSG00000175984|chr1:114625576-114625576|A/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	448.7397766113281	2	448.721633	895.428712	0.17896	8.0304E-05	-0.52646	-0.00023623	-0.3475	-0.00015593	448.7212180976457	34.221	0.72718	34.046	33.552	34.279	-0.17512					23	13	2	0	0	0	0.19805	1	12705	12705		12.532	0	1	15660000	+		12703	10354	7485	7528	12200	12200					-0.023184871274679608
GPPLYSPWDPT	11	Unmodified	_GPPLYSPWDPT_					0	0	0		ZFP36|p.L246Wfs*126|1|0.38|ENSG00000128016|chr19:39408431-39408431|C/-|frameshift_variant	ZFP36|p.L246Wfs*126|1|0.38|ENSG00000128016|chr19:39408431-39408431|C/-|frameshift_variant	ZFP36|p.L246Wfs*126|1|0.38|ENSG00000128016|chr19:39408431-39408431|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	615.2938842773438	2	615.295496	1228.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.373	1	27.062	26.562	27.562	-0.3114								0	0	0	0.94538	1	9796	9796		8.7454	2.0222	1				12704	18712	7486	7529	12201	12201					-0.028705955934810845
GPPMQCSCCMY	11	Unmodified	_GPPMQCSCCMY_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-4|HACE1	REV__nc|ENSG00000085382|Q8IYU2-4|HACE1	MSMS	HCT116MG_D190212_S4	4	610.207275390625	2	610.207283	1218.40001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.251	1	16.087	15.587	16.587	-0.16364								0	0	0	0.95925	1	5305	5305		1.4819	0	1		+		12705	10921	7487	7530	12202	12202					-0.2004507867807206
GPPNLALT	8	Unmodified	_GPPNLALT_					0	0	0		ENST00000390666.3_1_5:112769335-112769695:-|nuORF	ENST00000390666.3_1_5:112769335-112769695:-|nuORF	ENST00000390666.3_1_5:112769335-112769695:-|nuORF	MSMS	HCT116MG_D190212_S2	2	391.7239990234375	2	391.723978	781.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.152	1	38.059	37.559	38.559	-0.09301								0	0	0	0.72655	1	14324	14324		28.487	3.813	1				12706	7600	7488	7531	12203	12203					0.033944418059491
GPPPTNPPRQ	10	Unmodified	_GPPPTNPPRQ_					0	0	0			REV__ENST00000532285.1_2_11:64949426-64949516:+|nuORF	REV__ENST00000532285.1_2_11:64949426-64949516:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	530.780517578125	2	530.780348	1059.54614	0.46463	0.00024662	-0.33348	-0.000177	0.13115	6.9614E-05	530.7800759529936	20.47	0.51981	20.269	19.885	20.404	-0.20133					23	9	3	0	0	0	0.76492	1	6964	6964		22.736	7.898	1	7624000	+		12707	16321	7489	7532	12204	12204					0.018750905319848243
GPPREEGPSGP	11	Unmodified	_GPPREEGPSGP_					0	0	0			REV__USP43|p.V1023Sfs*4|1|0.39|ENSG00000154914|chr17:9728679-9728679|C/-|frameshift_variant	REV__USP43|p.V1023Sfs*4|1|0.39|ENSG00000154914|chr17:9728679-9728679|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	540.259521484375	2	540.259445	1078.50434	0.4382	0.00023674	-0.24888	-0.00013446	0.18932	0.00010228	540.2591921117153	19.753	0.78135	19.813	19.229	20.011	0.05983					24	14	2	0	0	0	0.65047	1	6747	6747		29.841	4.959	1	3350800	+		12708	12689	7490	7533	12205	12205					-0.031775099471587964
GPPREEGPSGP	11	Unmodified	_GPPREEGPSGP_					0	0	0			REV__USP43|p.V1023Sfs*4|1|0.39|ENSG00000154914|chr17:9728679-9728679|C/-|frameshift_variant	REV__USP43|p.V1023Sfs*4|1|0.39|ENSG00000154914|chr17:9728679-9728679|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	540.2600708007812	2	540.259445	1078.50434	0.43758	0.00023641	0.012544	6.777E-06	0.45013	0.00024319	540.2593235577392	19.852	1.2898	19.658	18.862	20.152	-0.19367					39	24	2	0	0	0	0.69749	1	6678	6678		22.736	0	1	2863200	+		12709	12689	7490	7533	12206	12206					-0.031775099471587964
GPPREEGPSGP	11	Unmodified	_GPPREEGPSGP_					0	0	0			REV__USP43|p.V1023Sfs*4|1|0.39|ENSG00000154914|chr17:9728679-9728679|C/-|frameshift_variant	REV__USP43|p.V1023Sfs*4|1|0.39|ENSG00000154914|chr17:9728679-9728679|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	540.25927734375	2	540.259445	1078.50434	0.4627	0.00024998	-0.73953	-0.00039954	-0.27683	-0.00014956	540.2587504186353	20.705	0.57147	20.5	20.193	20.764	-0.20469					17	10	2	0	0	0	0.70691	1	7186	7186		19.257	8.4331	1	2041400	+		12710	12689	7490	7533	12207	12207					-0.031775099471587964
GPPREGSH	8	Unmodified	_GPPREGSH_					0	0	0			REV__ENST00000495001.1_1_10:103607023-103607257:-|nuORF	REV__ENST00000495001.1_1_10:103607023-103607257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	836.4039916992188	1	836.400941	835.393664	0.53602	0.00044832	0.19739	0.0001651	0.7334	0.00061342	836.4010321403186	17.114	0.78041	17.199	16.964	17.745	0.084467					25	14	3	0	0	0	0.64404	1	5913	5913		28.487	10.352	1	17359000	+		12711	16079	7491	7534	12208	12208					-0.030616851447575755
GPPRPTGP	8	Unmodified	_GPPRPTGP_					0	0	0			REV__CCDC9|p.T458Pfs*51|1|0.53|ENSG00000105321|chr19:47271449-47271449|C/-|frameshift_variant	REV__CCDC9|p.T458Pfs*51|1|0.53|ENSG00000105321|chr19:47271449-47271449|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	389.7138977050781	2	389.713945	777.413337	0.2202	8.5815E-05	0.29113	0.00011346	0.51133	0.00019927	389.7138128492363	22.41	0.57074	22.025	21.739	22.31	-0.3852					13	10	2	0	0	0	0.76257	1	7954	7954		15.768	1.1865	1	6160400	+		12712	10120	7492	7535	12209	12209					0.01572690866009907
GPPSDRPSDGP	11	Unmodified	_GPPSDRPSDGP_					0	0	0			REV__ENST00000451122.5_1_7:116165439-116165832:+|nuORF	REV__ENST00000451122.5_1_7:116165439-116165832:+|nuORF	MSMS	HCT116MG_D190212_S2	2	541.272705078125	2	541.249077	1080.4836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.054	1	18.685	18.185	19.185	-0.3695								0	0	0	0.91433	1	6585	6585		18.146	1.0335	1		+		12713	15712	7493	7536	12210	12210					-0.0534210032685678
GPPSGGTPPA	10	Unmodified	_GPPSGGTPPA_					0	0	0			REV__ACTRT2|p.D336Tfs*16|1|0.26|ENSG00000169717|chr1:3022686-3022686|C/-|frameshift_variant	REV__ACTRT2|p.D336Tfs*16|1|0.26|ENSG00000169717|chr1:3022686-3022686|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	837.4110107421875	1	837.410108	836.402832	0.75686	0.0006338	0.057955	4.8532E-05	0.81482	0.00068234	837.4099803291217	21.411	0.77868	21.192	20.751	21.529	-0.21832					18	14	2	0	0	0	0.079351	1	7364	7364		78.149	7.0158	1	2574100	+		12714	9842	7494	7537	12211	12211					-0.021913365790851458
GPPSGPGA	8	Unmodified	_GPPSGPGA_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	HCT116MG_D190212_S2	2	639.3095092773438	1	639.309666	638.30239	0.29236	0.00018691	0.40861	0.00026123	0.70097	0.00044813	639.3096573918695	18.266	1.0953	17.907	17.437	18.532	-0.3598					30	20	2	0	0	0	0.060038	1	6203	6203		112.56	18.675	1	12978000			12715	3164	7495	7538	12212	12212					-0.031229488420990492
GPPSGPGA	8	Unmodified	_GPPSGPGA_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	HCT116MG_D190212_S3	3	639.3102416992188	1	639.309666	638.30239	0.26967	0.0001724	0.21052	0.00013459	0.48019	0.00030699	639.3097567481949	17.738	0.93625	17.82	17.221	18.158	0.081358					25	17	2	0	0	0	0.13911	1	5908	5908		86.121	4.2573	1	7093600			12716	3164	7495	7538	12213	12213					-0.031229488420990492
GPPSGPGA	8	Unmodified	_GPPSGPGA_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	HCT116MG_D190212_S4	4	639.3099365234375	1	639.309666	638.30239	0.24077	0.00015393	0.30394	0.00019431	0.54472	0.00034824	639.3097616790719	17.889	0.57151	17.714	17.376	17.948	-0.17501					12	10	2	0	0	0	0.19622	1	5959	5959		74.396	3.6808	1	1682300			12717	3164	7495	7538	12214	12214					-0.031229488420990492
GPPSLAPQQP	10	Unmodified	_GPPSLAPQQP_					0	0	0			REV__TUBGCP6|p.L881Cfs*77|1|0.21|ENSG00000128159|chr22:50221719-50221719|C/-|frameshift_variant	REV__TUBGCP6|p.L881Cfs*77|1|0.21|ENSG00000128159|chr22:50221719-50221719|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	496.23907470703125	2	496.263999	990.513445	0.3613	0.0001793	-0.13286	-6.5932E-05	0.22844	0.00011337	496.2639365584104	30.292	0.40618	29.935	29.597	30.003	-0.3571					10	7	2	0	0	0	0.68372	1	10990	10990		21.747	1.3321	1	3576300	+		12718	18032	7496	7539	12215	12215					0.017808834091511017
GPPSQAQSPA	10	Unmodified	_GPPSQAQSPA_					0	0	0		ENSG00000089116|ENST00000261731|LHX5	ENSG00000089116|ENST00000261731|LHX5	ENSG00000089116|ENST00000261731|LHX5	MULTI-MSMS	HCT116MG_D190212_S3	3	470.2303771972656	2	470.230156	938.445759	0.16478	7.7484E-05	-0.02008	-9.4422E-06	0.1447	6.8042E-05	470.2301723275046	22.501	0.41684	22.482	22.231	22.647	-0.018871					10	7	2	0	0	0	0.55624	1	7920	7920		31.268	3.6395	1	3206600			12719	1516	7497	7540	12216	12216					-0.025925665216618654
GPPSSPTNDP	10	Unmodified	_GPPSSPTNDP_					0	0	0		CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	484.31463623046875	2	484.719621	967.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.055	1	14.728	14.228	15.228	-0.32684								0	0	0	0.92272	1	4975	4975		10.824	0	1				12720	426	7498	7541	12217	12217					-0.06032576621191765
GPPSYAAPGAP	11	Unmodified	_GPPSYAAPGAP_					0	0	0			REV__nc|ENSG00000010295|Q0D2I5|IFFO1	REV__nc|ENSG00000010295|Q0D2I5|IFFO1	MSMS	HCT116MG_D190212_S4	4	492.74102783203125	2	492.742899	983.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.143	1	16.972	16.472	17.472	-0.17047								0	0	0	0.89642	1	5665	5665		20.454	4.6064	1		+		12721	10514	7499	7542	12218	12218					-0.02115091999246488
GPPTSLNPTPP	11	Unmodified	_GPPTSLNPTPP_					0	0	0		ENST00000564480.1_2_16:19729090-19729441:-|nuORF	ENST00000564480.1_2_16:19729090-19729441:-|nuORF	ENST00000564480.1_2_16:19729090-19729441:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	539.2537841796875	2	539.282389	1076.55022	0.42101	0.00022704	0.099509	5.3663E-05	0.52052	0.00028071	539.2823075375313	41.99	0.61254	41.687	41.48	42.093	-0.30257					18	11	3	0	0	0	0.73177	1	15606	15606		10.074	0	1	17337000			12722	8845	7500	7543	12219	12219					0.01501135235048423
GPPVRTEYRLI	11	Unmodified	_GPPVRTEYRLI_					0	0	0		SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant;SRSF6|p.A312Gfs*18|1|0.11|ENSG00000124193|chr20:43460957-43460958|-/A|frameshift_variant;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6	SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant	SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	650.8745727539062	2	650.872237	1299.72992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.402	1	29.101	28.601	29.601	-0.30095								0	0	0	0.95113	1	10769	10769		5.7319	0.83484	1				12723	2832	7501	7544	12220	12220					0.09204439242853368
GPPVSATRPPP	11	Unmodified	_GPPVSATRPPP_					0	0	0			REV__ENST00000465160.2_1_9:140286885-140287641:-|nuORF	REV__ENST00000465160.2_1_9:140286885-140287641:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	359.0284118652344	3	359.201341	1074.58219	-0.66386	-0.00023846	0.37694	0.0001354	-0.28692	-0.00010306	359.20142776220735	15.462	1.4792	15.3	14.926	16.405	-0.16173					47	29	2	0	0	0	0.72974	2	5210	5210;5285		5.4027	0	1	1604700	+		12724	15818	7502	7545	12221;12222	12221					0.04788547708835722
GPQAHLSVPEG	11	Unmodified	_GPQAHLSVPEG_					0	0	0			REV__nc|ENSG00000173826|Q9H252-2|KCNH6	REV__nc|ENSG00000173826|Q9H252-2|KCNH6	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2774658203125	2	546.277638	1090.54072	0.17045	9.3116E-05	0.41012	0.00022404	0.58058	0.00031716	546.2777718138784	17.39	0.82855	17.219	16.708	17.536	-0.17046					34	15	3	0	0	0	0.62391	1	5888	5888		32.786	1.5173	1	7696100	+		12725	13456	7503	7546	12223	12223					-0.0009263305048534676
GPQDRPPGQ	9	Unmodified	_GPQDRPPGQ_					0	0	0			REV__APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	REV__APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	476.23583984375	2	476.235773	950.456993	-0.13166	-6.27E-05	1.4638	0.0006971	1.3321	0.0006344	476.2361405180871	15.511	0.24085	15.349	15.22	15.461	-0.16173					6	4	2	0	0	0	0.61923	1	5028	5028		10.074	0	1	510300	+		12726	9962	7504	7547	12224	12224					-0.02021744427520389
GPQDRPPGQ	9	Unmodified	_GPQDRPPGQ_					0	0	0			REV__APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	REV__APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	476.235773	950.456993	0.20575	9.7986E-05	-0.32902	-0.00015669	-0.12327	-5.8707E-05	476.2355678525358	15.435	0.41665	15.521	15.352	15.769	0.085423	0.085977	-0.0001624	NaN	10.074	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	929450	+		12727	9962	7504	7547							-0.02021744427520389
GPQDRPPGQ	9	Unmodified	_GPQDRPPGQ_					0	0	0			REV__APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	REV__APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	476.235773	950.456993	-0.13166	-6.27E-05	1.4638	0.0006971	1.3321	0.0006344	476.2361405180871	15.511	0.24085	15.349	15.22	15.461	-0.16173	-0.085977	0.0015452	NaN	10.074	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510300	+		12728	9962	7504	7547							-0.02021744427520389
GPQFFLFFFF	10	Unmodified	_GPQFFLFFFF_					0	0	0		ENST00000310483.10_2_1:153936131-153940173:-|nuORF	ENST00000310483.10_2_1:153936131-153940173:-|nuORF	ENST00000310483.10_2_1:153936131-153940173:-|nuORF	MSMS	HCT116MG_D190212_S3	3	432.88555908203125	3	432.886582	1295.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.528	1	16.613	16.113	17.113	0.085424								0	0	0	0.95511	1	5491	5491		3.5871	0.26742	1				12729	7055	7505	7548	12225	12225					0.0019238089644204592
GPQGNTQPTLP	11	Unmodified	_GPQGNTQPTLP_					0	0	0			REV__nc|ENSG00000140488|Q96J87-4|CELF6	REV__nc|ENSG00000140488|Q96J87-4|CELF6	MSMS	HCT116MG_D190212_S3	3	555.2837524414062	2	555.28292	1108.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.645	1	34.348	33.848	34.848	-0.29707								0	0	0	0.93295	1	12760	12760		15.248	1.7406	1		+		12730	12297	7506	7549	12226	12226					0.001353496039428137
GPQGPIPQPNS	11	Unmodified	_GPQGPIPQPNS_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2777709960938	2	546.277638	1090.54072	0.4848	0.00026484	-0.13781	-7.5284E-05	0.34699	0.00018955	546.2772203444905	17.196	0.41747	16.847	16.717	17.135	-0.34933					10	7	2	0	0	0	0.69168	1	5869	5869		24.882	2.2235	1	5218400	+		12731	11082	7507	7550	12227	12227					-0.0009263305048534676
GPQGPIPQPNS	11	Unmodified	_GPQGPIPQPNS_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2776489257812	2	546.277638	1090.54072	0.4303	0.00023506	0.10705	5.8477E-05	0.53734	0.00029354	546.2774384257687	17.964	0.62643	17.607	17.18	17.806	-0.35647					18	11	2	0	0	0	0.21106	1	6146	6146		74.2	20.367	1	6649100	+		12732	11082	7507	7550	12228	12228					-0.0009263305048534676
GPQGPIPQPNS	11	Unmodified	_GPQGPIPQPNS_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	HCT116MG_D190212_S3	3	546.2778930664062	2	546.277638	1090.54072	0.22209	0.00012132	0.46971	0.00025659	0.6918	0.00037791	546.2776842936255	17.169	0.83257	17.254	16.704	17.537	0.084467					32	15	3	0	0	0	0.18818	1	5708	5708		76.825	31.125	1	9015300	+		12733	11082	7507	7550	12229	12229					-0.0009263305048534676
GPQGPIPQPNS	11	Unmodified	_GPQGPIPQPNS_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2774658203125	2	546.277638	1090.54072	-0.050824	-2.7764E-05	0.62418	0.00034098	0.57336	0.00031321	546.2776182718735	16.593	0.54285	16.426	16.221	16.763	-0.16664					16	10	2	0	0	0	0.2665	1	5432	5432		67.838	20.089	1	4838100	+		12734	11082	7507	7550	12230	12230					-0.0009263305048534676
GPQGPIPQPNS	11	Unmodified	_GPQGPIPQPNS_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2777709960938	2	546.277638	1090.54072	0.17045	9.3116E-05	0.41012	0.00022404	0.58058	0.00031716	546.2777718138784	17.39	0.82855	17.219	16.708	17.536	-0.17046					34	15	3	0	0	0	0.58525	1	5658	5658		37.075	15.538	1	7696100	+		12735	11082	7507	7550	12231	12231					-0.0009263305048534676
GPQGPIPQPNS	11	Unmodified	_GPQGPIPQPNS_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	HCT116MG_D190212_S4	4	546.7701416015625	2	546.277638	1090.54072	-0.050824	-2.7764E-05	0.62418	0.00034098	0.57336	0.00031321	546.2776182718735	16.593	0.54285	16.426	16.221	16.763	-0.16664					16	10	2	0	0	0	0.36367	1	5516	5516		9.3831	5.0539	1	4838100	+		12736	11082	7507	7550	12232	12232					-0.0009263305048534676
GPQGPIPQPNS	11	Unmodified	_GPQGPIPQPNS_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	546.277638	1090.54072	0.4303	0.00023506	0.10705	5.8477E-05	0.53734	0.00029354	546.2774384257687	17.964	0.62643	17.607	17.18	17.806	-0.35647	0.24699	-0.0003245	NaN	76.825	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6649100	+		12737	11082	7507	7550							-0.0009263305048534676
GPQGPIPQPNS	11	Unmodified	_GPQGPIPQPNS_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	546.277638	1090.54072	0.22209	0.00012132	0.46971	0.00025659	0.6918	0.00037791	546.2776842936255	17.169	0.83257	17.254	16.704	17.537	0.084467	-0.10613	7.1723E-05	NaN	76.825	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9015300	+		12738	11082	7507	7550							-0.0009263305048534676
GPQGPIPQPNS	11	Unmodified	_GPQGPIPQPNS_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	546.277638	1090.54072	0.17045	9.3116E-05	0.41012	0.00022404	0.58058	0.00031716	546.2777718138784	17.39	0.82855	17.219	16.708	17.536	-0.17046	-0.14085	6.6265E-06	NaN	76.825	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7696100	+		12739	11082	7507	7550							-0.0009263305048534676
GPQGRIGISGP	11	Unmodified	_GPQGRIGISGP_					0	0	0			REV__COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	REV__COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.1389770507812	2	519.788173	1037.56179	0.29415	0.0001529	0.72865	0.00037874	1.0228	0.00053164	519.788591007119	23.461	0.31263	23.422	23.291	23.604	-0.03968					7	5	2	0	0	0	0.35998	1	8348	8348		6.2058	4.3615	1	2538100	+		12740	10242	7508	7551	12233	12233					0.04451377049053917
GPQHPPPPSGP	11	Unmodified	_GPQHPPPPSGP_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;DIAPH3|p.E51Rfs*12|1|0.32|ENSG00000139734|chr13:60163617-60163617|G/-|frameshift_variant	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MSMS	HCT116MG_D190212_S4	4	534.2694702148438	2	534.267073	1066.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.071	1	20.861	20.361	21.361	-0.20959								0	0	0	0.93552	1	7252	7252		13.906	0.86358	1				12741	3644	7509	7552	12234	12234					-0.011005983593122437
GPQKEPSGPA	10	Unmodified	_GPQKEPSGPA_					0	0	0			REV__ENST00000552382.5_1_12:54764042-54772879:-|nuORF	REV__ENST00000552382.5_1_12:54764042-54772879:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	967.4857788085938	1	967.484336	966.47706	0.59529	0.00057594	0.32608	0.00031548	0.92137	0.00089141	967.4846241529132	24.607	0.41645	24.524	24.341	24.757	-0.083694					13	7	2	0	0	0	0.35357	1	8751	8751		45.7	1.7178	1	6777800	+		12742	12853	7510	7553	12235	12235					-0.0075199348757450934
GPQKEPSGPA	10	Unmodified	_GPQKEPSGPA_					0	0	0			REV__ENST00000552382.5_1_12:54764042-54772879:-|nuORF	REV__ENST00000552382.5_1_12:54764042-54772879:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	967.484336	966.47706	0.59529	0.00057594	0.32608	0.00031548	0.92137	0.00089141	967.4846241529132	24.607	0.41645	24.524	24.341	24.757	-0.083694	0.01868	6.3506E-05	NaN	45.7	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6777800	+		12743	12853	7510	7553							-0.0075199348757450934
GPQKEPSGPA	10	Unmodified	_GPQKEPSGPA_					0	0	0			REV__ENST00000552382.5_1_12:54764042-54772879:-|nuORF	REV__ENST00000552382.5_1_12:54764042-54772879:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	967.484336	966.47706	0.74272	0.00071857	0.034943	3.3807E-05	0.77766	0.00075238	967.4842657229668	24.755	0.36337	24.486	24.289	24.653	-0.26881	-0.01868	-0.00021816	NaN	45.7	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6130300	+		12744	12853	7510	7553							-0.0075199348757450934
GPQLELRDTY	10	Unmodified	_GPQLELRDTY_					0	0	0			REV__TTBK2|p.N876Kfs*2|2|0.34|ENSG00000128881|chr15:42752618-42752619|-/T|frameshift_variant	REV__TTBK2|p.N876Kfs*2|2|0.34|ENSG00000128881|chr15:42752618-42752619|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	596.3040161132812	2	596.303852	1190.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.101	1	21.136	20.636	21.636	0.034473								0	0	0	0.92607	1	7336	7336		10.074	0	1		+		12745	11880	7511	7554	12236	12236					0.005479052925011274
GPQPEPRDITT	11	Unmodified	_GPQPEPRDITT_					0	0	0		ENSG00000134760|ENST00000257192|DSG1	ENSG00000134760|ENST00000257192|DSG1	ENSG00000134760|ENST00000257192|DSG1	MSMS	HCT116MG_D190212_S4	4	605.8076171875	2	605.806759	1209.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.888	1	19.694	19.194	20.194	-0.19367								0	0	0	0.9387	1	6774	6774		12.241	3.4953	1				12746	3303	7512	7555	12237	12237					0.002550038041135849
GPQPPRHQL	9	Unmodified	_GPQPPRHQL_					0	0	0		ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	MSMS	HCT116MG_D190212_S4	4	515.2823486328125	2	515.283057	1028.55156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.41	1	28.079	27.579	28.579	-0.33138								0	0	0	0.76669	1	10215	10215		12.532	0.29089	1				12747	5917	7513	7556	12238	12238					0.038428141144549954
GPQPPSQGPA	10	Unmodified	_GPQPPSQGPA_					0	0	0		ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	MULTI-MSMS	HCT116MG_D190212_S3	3	468.2330017089844	2	468.232699	934.450845	0.10838	5.0746E-05	-0.20568	-9.6306E-05	-0.097303	-4.556E-05	468.2325330838812	20.966	0.62644	21.001	20.766	21.393	0.034473					16	11	2	0	0	0	0.74117	1	7396	7396		16.942	1.0951	1	4931200			12748	6678	7514	7557	12239	12239					-0.019002626590577165
GPQPQHSQPPP	11	Unmodified	_GPQPQHSQPPP_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	HCT116MG_D190212_S1	1	390.528076171875	3	390.528117	1168.56252	-0.075834	-2.9615E-05	-0.099981	-3.9045E-05	-0.17581	-6.8661E-05	390.52803693556774	15.353	0.20846	15.353	15.275	15.484	0					5	3	2	0	0	0	0.74191	1	5127	5127		1.4551	0	1	1396000			12749	6335	7515	7558	12240	12240					-0.01501828301934438
GPQPQLYQL	9	Unmodified	_GPQPQLYQL_					0	0	0			REV__TRMU|p.R240Q|1|0.42|ENSG00000100416|chr22:46352277-46352277|G/A|missense_variant	REV__TRMU|p.R240Q|1|0.42|ENSG00000100416|chr22:46352277-46352277|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	522.27978515625	2	522.279649	1042.54475	0.30937	0.00016158	0.14373	7.5069E-05	0.4531	0.00023665	522.2797882355597	43.029	0.26004	43.029	42.9	43.16	0					7	4	2	0	0	0	0.47829	1	16280	16280		18.135	18.135	1	7212700	+		12750	18018	7516	7559	12241	12241					0.025174564432063562
GPQPQLYQL	9	Unmodified	_GPQPQLYQL_					0	0	0			REV__TRMU|p.R240Q|1|0.42|ENSG00000100416|chr22:46352277-46352277|G/A|missense_variant	REV__TRMU|p.R240Q|1|0.42|ENSG00000100416|chr22:46352277-46352277|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	522.279649	1042.54475	-0.040423	-2.1112E-05	-0.61708	-0.00032229	-0.6575	-0.0003434	522.279464235703	43.146	0.30872	43.072	42.891	43.2	-0.073376	0.021522	-0.00060978	NaN	18.135	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6970100	+		12751	18018	7516	7559							0.025174564432063562
GPQPTPAT	8	Unmodified	_GPQPTPAT_					0	0	0			REV__ENST00000512204.5_1_17:48185497-48187458:+|nuORF	REV__ENST00000512204.5_1_17:48185497-48187458:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	768.3892211914062	1	768.388645	767.381368	0.86642	0.00066574	-0.043052	-3.3081E-05	0.82336	0.00063266	768.3886665262233	19.904	0.3119	19.71	19.58	19.892	-0.19367					8	5	2	0	0	0	0.73076	1	6805	6805		19.439	2.4967	1	2506400	+		12752	10480	7517	7560	12242	12242					-0.011627216078068159
GPQQARQP	8	Unmodified	_GPQQARQP_					0	0	0			REV__ENST00000316673.8_1_20:42984410-43034812:+|nuORF	REV__ENST00000316673.8_1_20:42984410-43034812:+|nuORF	MSMS	HCT116MG_D190212_S4	4	441.25531005859375	2	441.233033	880.451513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.203	1	24.924	24.424	25.424	-0.27958								0	0	0	0.73047	1	8920	8920		28.173	5.0248	1		+		12753	14864	7518	7561	12243	12243					0.006505767806515905
GPQRRARWRR	10	Unmodified	_GPQRRARWRR_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MSMS	HCT116MG_D190212_S4	4	446.9288635253906	3	446.92906	1337.76535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.4054	1	0.14084	-0.35916	0.64084	-0.26456								0	0	0	0.97045	1	135	135		0.15932	0	1				12754	7434	7519	7562	12244	12244					0.10997959333872132
GPQRSLHVP	9	Unmodified	_GPQRSLHVP_					0	0	0		AXL|p.P337Lfs*29|1|0.33|ENSG00000167601|chr19:41238480-41238480|C/-|frameshift_variant;ENST00000599659.5_1_19:41725288-41749617:+|nuORF;nc|ENSG00000167601|P30530-2|AXL;ENSG00000167601|ENST00000301178|AXL	AXL|p.P337Lfs*29|1|0.33|ENSG00000167601|chr19:41238480-41238480|C/-|frameshift_variant	AXL|p.P337Lfs*29|1|0.33|ENSG00000167601|chr19:41238480-41238480|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	495.7762756347656	2	495.777608	989.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.282	1	40.904	40.404	41.404	-0.37732								0	0	0	0.69272	1	15176	15176		19.439	8.3245	1				12755	240	7520	7563	12245	12245					0.04547411740179541
GPQSFHLQP	9	Unmodified	_GPQSFHLQP_					0	0	0		ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-3|SUGP2	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MSMS	HCT116MG_D190212_S3	3	505.75469970703125	2	505.756341	1009.49813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.145	1	16.23	15.73	16.73	0.085424								0	0	0	0.768	1	5336	5336		7.9102	1.187	1				12756	9074	7521	7564	12246	12246					-0.006239833880499646
GPQSPFPPP	9	Unmodified	_GPQSPFPPP_					0	0	0			REV__ENST00000417262.5_1_1:202780753-202780990:+|nuORF	REV__ENST00000417262.5_1_1:202780753-202780990:+|nuORF	MSMS	HCT116MG_D190212_S2	2	462.14678955078125	2	462.23471	922.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.912	1	21.527	21.027	22.027	-0.38503								0	0	0	0.76781	1	7736	7736		8.5933	1.8701	1		+		12757	15487	7522	7565	12247	12247					-0.009461731653459537
GPQSYAGE	8	Unmodified	_GPQSYAGE_					0	0	0			REV__ANKRD26|p.V62Cfs*12|1|0.11|ENSG00000107890|chr10:27100144-27100144|T/-|frameshift_variant	REV__ANKRD26|p.V62Cfs*12|1|0.11|ENSG00000107890|chr10:27100144-27100144|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	404.67730712890625	2	404.677225	807.339897	-0.01068	-4.322E-06	-0.16198	-6.5548E-05	-0.17266	-6.987E-05	404.67714565751623	22.157	0.62527	22.158	21.886	22.511	0.00074387					17	11	2	0	0	0	0.53394	1	7774	7774		38.151	16.405	1	2694800	+		12758	9943	7523	7566	12248	12248					-0.07147902367148617
GPQSYAGE	8	Unmodified	_GPQSYAGE_					0	0	0			REV__ANKRD26|p.V62Cfs*12|1|0.11|ENSG00000107890|chr10:27100144-27100144|T/-|frameshift_variant	REV__ANKRD26|p.V62Cfs*12|1|0.11|ENSG00000107890|chr10:27100144-27100144|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	404.6768798828125	2	404.677225	807.339897	0.117	4.7345E-05	-0.11658	-4.7179E-05	0.00041061	1.6616E-07	404.6770548803008	22.167	0.9349	21.939	21.416	22.351	-0.22777					26	17	2	0	0	0	0.41924	1	7638	7638		48.346	13.944	1	3237100	+		12759	9943	7523	7566	12249	12249					-0.07147902367148617
GPQSYAGE	8	Unmodified	_GPQSYAGE_					0	0	0			REV__ANKRD26|p.V62Cfs*12|1|0.11|ENSG00000107890|chr10:27100144-27100144|T/-|frameshift_variant	REV__ANKRD26|p.V62Cfs*12|1|0.11|ENSG00000107890|chr10:27100144-27100144|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	404.677225	807.339897	-0.01068	-4.322E-06	-0.16198	-6.5548E-05	-0.17266	-6.987E-05	404.67714565751623	22.157	0.62527	22.158	21.886	22.511	0.00074387	0.10936	-1.5968E-05	NaN	48.346	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2694800	+		12760	9943	7523	7566							-0.07147902367148617
GPQSYAGE	8	Unmodified	_GPQSYAGE_					0	0	0			REV__ANKRD26|p.V62Cfs*12|1|0.11|ENSG00000107890|chr10:27100144-27100144|T/-|frameshift_variant	REV__ANKRD26|p.V62Cfs*12|1|0.11|ENSG00000107890|chr10:27100144-27100144|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	404.677225	807.339897	0.117	4.7345E-05	-0.11658	-4.7179E-05	0.00041061	1.6616E-07	404.6770548803008	22.167	0.9349	21.939	21.416	22.351	-0.22777	-0.10936	2.0769E-05	NaN	48.346	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3237100	+		12761	9943	7523	7566							-0.07147902367148617
GPQTSAEVYR	10	Unmodified	_GPQTSAEVYR_					0	0	0		ENSG00000152642|ENST00000282541|GPD1L;ENST00000474846.5_1_3:32200349-32207399:+|nuORF	ENSG00000152642|ENST00000282541|GPD1L	ENSG00000152642|ENST00000282541|GPD1L	MULTI-MSMS	HCT116MG_D190212_S3	3	554.2745971679688	2	554.275095	1106.53564	0.28369	0.00015724	0.27104	0.00015023	0.55473	0.00030747	554.2750408003731	16.87	0.57228	16.954	16.444	17.016	0.084467					13	10	2	0	0	0	0.55624	1	5598	5598		31.268	3.6395	1	1378500			12762	4159	7524	7567	12250	12250					-0.013369369131169151
GPQTSNAYHE	10	Unmodified	_GPQTSNAYHE_					0	0	0			REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant	REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	552.24169921875	2	552.241252	1102.46795	0.29478	0.00016279	-1.5399	-0.00085042	-1.2452	-0.00068763	552.240196621387	16.731	0.7284	16.816	16.392	17.12	0.084467					18	13	2	0	0	0	0.6277	1	5569	5569		26.268	2.2476	1	2092300	+		12763	10760	7525	7568	12251	12251					-0.07918386843903136
GPQTSNAYHE	10	Unmodified	_GPQTSNAYHE_					0	0	0			REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant	REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	552.241252	1102.46795	0.29478	0.00016279	-1.5399	-0.00085042	-1.2452	-0.00068763	552.240196621387	16.731	0.7284	16.816	16.392	17.12	0.084467	0.063041	-7.7651E-05	NaN	26.268	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2092300	+		12764	10760	7525	7568							-0.07918386843903136
GPQTSNAYHE	10	Unmodified	_GPQTSNAYHE_					0	0	0			REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant	REV__SLC12A3|p.V295Afs*7|1|0.05|ENSG00000070915|chr16:56872382-56872382|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	552.241252	1102.46795	-0.012755	-7.044E-06	-1.4576	-0.00080496	-1.4704	-0.00081201	552.2404055072797	16.856	0.76126	16.69	16.261	17.022	-0.16664	-0.063041	1.3262E-05	NaN	26.268	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3870200	+		12765	10760	7525	7568							-0.07918386843903136
GPQVQQMAAVS	11	Unmodified	_GPQVQQMAAVS_					0	0	0			REV__ENST00000399928.5_2_21:30503098-30503236:+|nuORF	REV__ENST00000399928.5_2_21:30503098-30503236:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	558.2792358398438	2	558.279323	1114.54409	0.26408	0.00014743	-0.25468	-0.00014218	0.0093936	5.2443E-06	558.27925911302	29.408	0.36392	29.059	28.929	29.293	-0.34921					8	6	2	0	0	0	0.48186	1	10627	10627		47.749	2.0491	1	7834000	+		12766	14960	7526	7569	12252	12252					-0.008597062681246825
GPQYSAQP	8	Unmodified	_GPQYSAQP_					0	0	0		nc|ENSG00000105278|Q9UPR6-3|ZFR2;ZFR2|p.P188Rfs*239|1|0.22|ENSG00000105278|chr19:3831695-3831695|G/-|frameshift_variant;ZFR2|p.K352Nfs*75|1|0.42|ENSG00000105278|chr19:3825387-3825387|T/-|frameshift_variant;ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant;ENSG00000105278|ENST00000262961|ZFR2	nc|ENSG00000105278|Q9UPR6-3|ZFR2	nc|ENSG00000105278|Q9UPR6-3|ZFR2	MULTI-MSMS	HCT116MG_D190212_S4	4	424.7023620605469	2	424.200867	846.387182	0.32346	0.00013721	0.050212	2.13E-05	0.37368	0.00015851	424.2007467129678	25.382	1.0923	25.103	24.486	25.578	-0.27958					43	20	3	0	0	0	0.71077	1	8895	8895		21.747	3.6117	1	11748000			12767	1997	7527	7570	12253	12253					-0.04215623096138188
GPRAGQGVH	9	Unmodified	_GPRAGQGVH_					0	0	0		ENSG00000188396|ENST00000339355|DYNLT4	ENSG00000188396|ENST00000339355|DYNLT4	ENSG00000188396|ENST00000339355|DYNLT4	MULTI-MSMS	HCT116MG_D190212_S3	3	439.7335205078125	2	439.7332	877.451848	-0.016778	-7.3777E-06	0.10393	4.5699E-05	0.087148	3.8322E-05	439.7332012676726	17.04	0.3643	17.124	16.912	17.277	0.084467					14	6	3	0	0	0	0.36396	1	5698	5698		24.674	3.8027	1	3825600			12768	5982	7528	7571	12254	12254					0.008219965005196173
GPREHHQQQP	10	Unmodified	_GPREHHQQQP_					0	0	0			REV__ENST00000432006.1_1_7:16625648-16626215:-|nuORF	REV__ENST00000432006.1_1_7:16625648-16626215:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	607.2960205078125	2	607.294685	1212.57482	0.91351	0.00055477	1.4977	0.00090952	2.4112	0.0014643	607.7965511812463	31.939	0.51911	31.564	31.226	31.745	-0.37529					14	9	2	0	0	0	0.85662	1	11569	11569		7.2892	1.5574	1	3643700	+		12769	15585	7529	7572	12255	12255					-0.02296791838853096
GPRGEAGPAG	10	Unmodified	_GPRGEAGPAG_					0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	MULTI-MSMS	HCT116MG_D190212_S2	2	434.7171630859375	2	434.717216	867.419879	-0.11157	-4.85E-05	0.46885	0.00020382	0.35728	0.00015532	434.717421882974	14.59	0.31317	14.27	14.14	14.453	-0.31952					6	5	2	0	0	0	0.65928	1	4809	4809		23.79	0	1	3335500			12770	6481	7530	7573	12256	12256					-0.01913415973285737
GPRGLDDRY	9	Unmodified	_GPRGLDDRY_					0	0	0		PKP3|p.G189R|1|0.29|ENSG00000184363|chr11:397066-397066|G/A|missense_variant	PKP3|p.G189R|1|0.29|ENSG00000184363|chr11:397066-397066|G/A|missense_variant	PKP3|p.G189R|1|0.29|ENSG00000184363|chr11:397066-397066|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	524.761962890625	2	524.762155	1047.50976	0.29371	0.00015413	-0.08168	-4.2863E-05	0.21203	0.00011126	524.7622581343685	16.228	0.83195	16.314	15.873	16.705	0.085424					38	15	3	0	0	0	0.49616	1	5262	5262		17.113	0	1	3383600			12771	9752	7531	7574	12257	12257					-0.012097863647113627
GPRGLDDRY	9	Unmodified	_GPRGLDDRY_					0	0	0		PKP3|p.G189R|1|0.29|ENSG00000184363|chr11:397066-397066|G/A|missense_variant	PKP3|p.G189R|1|0.29|ENSG00000184363|chr11:397066-397066|G/A|missense_variant	PKP3|p.G189R|1|0.29|ENSG00000184363|chr11:397066-397066|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	524.762155	1047.50976	-0.23223	-0.00012187	0.36145	0.00018967	0.12922	6.7808E-05	524.7623223619275	16.474	0.78773	16.309	15.821	16.609	-0.16538	-0.0025009	0.00018518	NaN	17.113	35	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2329500			12772	9752	7531	7574							-0.012097863647113627
GPRGNAPNSP	10	Unmodified	_GPRGNAPNSP_					0	0	0			REV__ENST00000302472.3_1_5:40679821-40680163:+|nuORF	REV__ENST00000302472.3_1_5:40679821-40680163:+|nuORF	MSMS	HCT116MG_D190212_S4	4	484.2279357910156	2	483.741222	965.467892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.375	1	19.188	18.688	19.688	-0.18674								0	0	0	0.87399	1	6567	6567		19.257	2.3147	1		+		12773	14796	7532	7575	12258	12258					-0.01622342053246939
GPRQHFEPP	9	Unmodified	_GPRQHFEPP_					0	0	0			REV__nc|ENSG00000083896|Q96MU7-2|YTHDC1	REV__nc|ENSG00000083896|Q96MU7-2|YTHDC1	MSMS	HCT116MG_D190212_S3	3	532.29296875	2	532.76724	1063.51993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.66	1	28.454	27.954	28.954	-0.20593								0	0	0	0.7676	1	10381	10381		9.3474	1.4373	1		+		12774	10910	7533	7576	12259	12259					-0.009291786394896917
GPRRRIILKRV	11	Unmodified	_GPRRRIILKRV_					0	0	0			REV__nc|ENSG00000163399|P05023-3|ATP1A1	REV__nc|ENSG00000163399|P05023-3|ATP1A1	MSMS	HCT116MG_D190212_S1	1	682.4622802734375	2	682.459679	1362.90481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.672	1	26.672	26.172	27.172	0								0	0	0	0.95925	1	9647	9647		1.4819	0.15237	1		+		12775	12920	7534	7577	12260	12260					0.2378690389853091
GPRSPPPGG	9	Unmodified	_GPRSPPPGG_					0	0	0		ENST00000524644.5_1_16:30406793-30408660:+|nuORF;ENST00000320159.2_1_16:30406847-30408660:+|nuORF	ENST00000524644.5_1_16:30406793-30408660:+|nuORF	ENST00000524644.5_1_16:30406793-30408660:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	411.21722412109375	2	411.216852	820.419151	-0.081897	-3.3677E-05	0.25404	0.00010446	0.17214	7.0787E-05	411.2169057246332	16.447	0.52048	16.447	16.161	16.681	0					14	9	2	0	0	0	0.2682	1	5529	5529		34.102	1.9855	1	4678800			12776	7096	7535	7578	12261	12261					0.0017578937766984382
GPRYHFFPPR	10	Unmodified	_GPRYHFFPPR_					0	0	0			REV__nc|ENSG00000290203|Q96PH1-5|NOX5	REV__nc|ENSG00000290203|Q96PH1-5|NOX5	MSMS	HCT116MG_D190212_S3	3	425.22320556640625	3	425.22448	1272.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.805	1	15.89	15.39	16.39	0.085423								0	0	0	0.93099	1	5199	5199		8.9762	4.4474	1		+		12777	14395	7536	7579	12262	12262					0.026190514482550498
GPRYPPTQ	8	Unmodified	_GPRYPPTQ_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MSMS	HCT116MG_D190212_S3	3	458.2393798828125	2	458.237784	914.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.705	1	30.444	29.944	30.944	-0.26071								0	0	0	0.81076	1	11190	11190		21.747	8.2388	1		+		12778	11840	7537	7580	12263	12263					0.00036345066178000707
GPSAPPEDGAR	11	Unmodified	_GPSAPPEDGAR_					0	0	0			REV__ENST00000434027.2_1_5:98106159-98115843:+|nuORF	REV__ENST00000434027.2_1_5:98106159-98115843:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	527.2515258789062	2	527.25162	1052.48869	0.37936	0.00020002	-0.0099311	-5.2362E-06	0.36942	0.00019478	527.251525028782	23.649	0.36398	23.402	23.272	23.636	-0.24775					9	6	2	0	0	0	0.7259	1	8335	8335		12.241	0.60036	1	6928900	+		12779	15602	7538	7581	12264	12264					-0.03545796464254636
GPSAPWKSFQS	11	Unmodified	_GPSAPWKSFQS_					0	0	0			REV__ENSG00000150907|ENST00000379561|FOXO1	REV__ENSG00000150907|ENST00000379561|FOXO1	MSMS	HCT116MG_D190212_S3	3	596.2921752929688	2	596.293288	1190.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.745	1	34.448	33.948	34.948	-0.29707								0	0	0	0.9465	1	12800	12800		8.1555	1.9497	1		+		12780	12589	7539	7582	12265	12265					-0.015640600163806084
GPSATMRMSA	10	Unmodified	_GPSATMRMSA_					0	0	0			REV__ENST00000584531.1_1_18:14972398-14972626:+|nuORF	REV__ENST00000584531.1_1_18:14972398-14972626:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7344055175781	2	504.733694	1007.45284	0.33412	0.00016864	0.30775	0.00015533	0.64187	0.00032397	504.73383519485236	14.673	0.52145	14.353	14.192	14.714	-0.31952					11	9	2	0	0	0	0.87239	1	4847	4847		5.2969	5.2969	1	1004300	+		12781	16643	7540	7583	12266	12266					-0.05059293237104612
GPSAYSAH	8	Unmodified	_GPSAYSAH_					0	0	0		HOXB1|p.P143Lfs*41|2|0.38|ENSG00000120094|chr17:48530477-48530477|G/-|frameshift_variant;nc|ENSG00000120094|P14653-2|HOXB1;ENSG00000120094|ENST00000239174|HOXB1	HOXB1|p.P143Lfs*41|2|0.38|ENSG00000120094|chr17:48530477-48530477|G/-|frameshift_variant	HOXB1|p.P143Lfs*41|2|0.38|ENSG00000120094|chr17:48530477-48530477|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	789.3531494140625	1	789.352594	788.345317	0.85965	0.00067857	-0.085222	-6.7271E-05	0.77443	0.0006113	789.3523757086846	28.465	0.8835	28.134	27.596	28.479	-0.33138					27	16	2	0	0	0	0.81821	1	10330	10330		9.3474	0.75416	1	3437000			12782	2685	7541	7584	12267	12267					-0.0573217878467176
GPSDDCTC	8	Unmodified	_GPSDDCTC_					0	0	0			REV__ENSG00000158955|ENST00000290015|WNT9B	REV__ENSG00000158955|ENST00000290015|WNT9B	MULTI-MSMS	HCT116MG_D190212_S1	1	797.2440185546875	1	797.244031	796.236754	0.82205	0.00065538	-0.61238	-0.00048822	0.20968	0.00016716	797.2432139995462	22.924	0.26039	22.924	22.793	23.054	0					6	4	2	0	0	0	0.86388	1	8177	8177		2.8892	0.58649	1	2844400	+		12783	12793	7542	7585	12268	12268					-0.16951474141615108
GPSDGIRQP	9	Unmodified	_GPSDGIRQP_					0	0	0			REV__nc|ENSG00000250091|P0CZ25|DNAH10OS	REV__nc|ENSG00000250091|P0CZ25|DNAH10OS	MULTI-SECPEP	HCT116MG_D190212_S3	3	464.2303771972656	2	463.738148	925.461744	0.26414	0.00012249	-0.39269	-0.0001821	-0.12855	-5.9613E-05	463.7379394000681	16.344	0.46799	16.429	16.237	16.705	0.085424					11	8	2	0	0	0	0.22781	1	5372	5372		3.9444	0	1	1597200	+		12784	17309	7543	7586	12269	12269					-0.0039686028476353385
GPSDLPKMDHV	11	Unmodified	_GPSDLPKMDHV_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	HCT116MG_D190212_S2	2	598.7809448242188	2	598.29243	1194.57031	0.58363	0.00034918	0.8599	0.00051447	1.4435	0.00086365	598.2930045926319	18.123	0.20863	17.767	17.597	17.806	-0.35647					5	3	2	0	0	0	0.34294	1	6176	6176		26.268	5.8536	1	2060300	+		12785	11102	7544	7587	12270	12270					-0.01919437096648835
GPSEAVQDP	9	Unmodified	_GPSEAVQDP_					0	0	0		ENST00000442528.2_1_11:45826023-45827525:+|nuORF;ENST00000530471.1_3_11:45826723-45827525:+|nuORF;ENST00000526817.1_1_11:45825827-45827525:+|nuORF	ENST00000442528.2_1_11:45826023-45827525:+|nuORF	ENST00000442528.2_1_11:45826023-45827525:+|nuORF	MSMS	HCT116MG_D190212_S4	4	450.2090148925781	2	450.208889	898.403226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.103	1	22.866	22.366	23.366	-0.23758								0	0	0	0.76669	1	8072	8072		12.532	3.1841	1				12786	7932	7545	7588	12271	12271					-0.05003961649902067
GPSEEFNY	8	Unmodified	_GPSEEFNY_					0	0	0			REV__ENSG00000050555|ENST00000361069|LAMC3	REV__ENSG00000050555|ENST00000361069|LAMC3	MSMS	HCT116MG_D190212_S4	4	471.6936340332031	2	471.695615	941.376677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.069	1	15.905	15.405	16.405	-0.16364								0	0	0	0.8837	1	5231	5231		14.582	3.7578	1		+		12787	10620	7546	7589	12272	12272					-0.0963565054122455
GPSFRDECFR	10	Unmodified	_GPSFRDECFR_					0	0	0			REV__ENSG00000130038|ENST00000440314|CRACR2A	REV__ENSG00000130038|ENST00000440314|CRACR2A	MSMS	HCT116MG_D190212_S4	4	607.3505249023438	2	607.274572	1212.53459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.737	1	16.57	16.07	17.07	-0.16664								0	0	0	0.94107	1	5501	5501		6.7232	0.99131	1		+		12788	11904	7547	7590	12273	12273					-0.06317474553657121
GPSGALAD	8	Unmodified	_GPSGALAD_					0	0	0		ENST00000440783.2_1_16:46919383-46934652:+|nuORF	ENST00000440783.2_1_16:46919383-46934652:+|nuORF	ENST00000440783.2_1_16:46919383-46934652:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	687.3309936523438	1	687.330795	686.323519	0.6045	0.00041549	0.36313	0.00024959	0.96763	0.00066508	687.3308976678809	22.772	0.78054	22.534	22.03	22.81	-0.23758					18	14	2	0	0	0	0.48901	1	7928	7928		42.095	2.1372	1	2986000			12789	7921	7548	7591	12274	12274					-0.03218983533236042
GPSGAPGA	8	Unmodified	_GPSGAPGA_					0	0	0		COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;COL5A1|p.P1302Rfs*186|1|0.05|ENSG00000130635|chr9:134814030-134814030|C/-|frameshift_variant;COL5A1|p.G1351Efs*137|2|0.4|ENSG00000130635|chr9:134815605-134815605|C/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;REV__nc|ENSG00000084636|Q07092-2|COL16A1	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	613.2946166992188	1	613.294016	612.28674	0.46106	0.00028277	0.040744	2.4988E-05	0.50181	0.00030776	613.294026671989	17.053	0.46857	16.704	16.509	16.978	-0.34933					13	8	2	0	0	0	0.083541	1	5789	5789		98.807	24.411	1	3591000			12790	527;10221;10913	7549	7592	12275	12275					-0.03491235359149414
GPSGAPGPPGS	11	Unmodified	_GPSGAPGPPGS_					0	0	0			REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	HCT116MG_D190212_S4	4	880.41650390625	1	880.415922	879.408646	0.70076	0.00061696	-0.36361	-0.00032013	0.33715	0.00029683	880.4154758783114	22.951	0.73017	22.713	22.185	22.916	-0.23758					19	13	2	0	0	0	0.62391	1	7932	7932		32.786	7.7947	1	2202100	+		12791	14187	7550	7593	12276	12276					-0.03588238067425209
GPSGAVGAP	9	Unmodified	_GPSGAVGAP_					0	0	0			REV__MSX1|p.A50Gfs*125|1|1.0|ENSG00000163132|chr4:4860042-4860043|-/G|frameshift_variant	REV__MSX1|p.A50Gfs*125|1|1.0|ENSG00000163132|chr4:4860042-4860043|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	712.3629150390625	1	712.36243	711.355153	0.51141	0.00036431	0.14985	0.00010675	0.66126	0.00047106	712.3624647647156	20.914	0.31225	20.949	20.818	21.131	0.034473					7	5	2	0	0	0	0.058138	1	7287	7287		70.716	3.6802	1	3391000	+		12792	17038	7551	7594	12277	12277					-0.012069907792920276
GPSGAVGAP	9	Unmodified	_GPSGAVGAP_					0	0	0			REV__MSX1|p.A50Gfs*125|1|1.0|ENSG00000163132|chr4:4860042-4860043|-/G|frameshift_variant	REV__MSX1|p.A50Gfs*125|1|1.0|ENSG00000163132|chr4:4860042-4860043|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	712.36243	711.355153	0.51141	0.00036431	0.14985	0.00010675	0.66126	0.00047106	712.3624647647156	20.914	0.31225	20.949	20.818	21.131	0.034473	0.0036649	1.1748E-05	NaN	70.716	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3391000	+		12793	17038	7551	7594							-0.012069907792920276
GPSGAWHQQAR	11	Unmodified	_GPSGAWHQQAR_					0	0	0		ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	597.7918701171875	2	597.791778	1193.569	0.59644	0.00035655	-2.1815	-0.0013041	-1.5851	-0.00094756	597.790940026305	15.357	0.624	15.441	14.987	15.611	0.083787					18	11	2	0	0	0	0.69749	1	4963	4963		22.736	8.3309	1	1850700			12794	7996	7552	7595	12278	12278					-0.02003890350556503
GPSGAWHQQAR	11	Unmodified	_GPSGAWHQQAR_					0	0	0		ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	ENST00000452622.1_1_7:562316-563757:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	597.791015625	2	597.791778	1193.569	0.4689	0.0002803	-1.6501	-0.00098643	-1.1812	-0.00070612	597.7908213749877	15.311	0.53318	15.15	14.824	15.357	-0.16173					16	10	2	0	0	0	0.69749	1	4910	4910		22.736	6.8891	1	852480			12795	7996	7552	7595	12279	12279					-0.02003890350556503
GPSGLAGE	8	Unmodified	_GPSGLAGE_					0	0	0		COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant;COL7A1|p.P2298Lfs*90|1|0.18|ENSG00000114270|chr3:48572678-48572678|G/-|frameshift_variant;COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant;nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1;COL7A1|p.G2177Wfs*113|1|0.1|ENSG00000114270|chr3:48573864-48573865|-/G|frameshift_variant;ENST00000487017.5_1_3:48609337-48621784:-|nuORF	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	687.3319702148438	1	687.330795	686.323519	0.86153	0.00059216	0.10566	7.2625E-05	0.9672	0.00066478	687.3307869503702	22.566	0.62493	22.548	22.126	22.751	-0.018869					16	11	2	0	0	0	0.64404	1	7898	7898		28.487	0	1	4255900			12796	530	7553	7596	12280	12280					-0.03218983533224673
GPSGLPGPV	9	Unmodified	_GPSGLPGPV_					0	0	0		ENSG00000050767|ENST00000390654|COL23A1	ENSG00000050767|ENST00000390654|COL23A1	ENSG00000050767|ENST00000390654|COL23A1	MULTI-MSMS	HCT116MG_D190212_S2	2	780.4255981445312	1	780.42503	779.417754	0.91759	0.00071611	-0.061877	-4.829E-05	0.85571	0.00066782	780.4249556087422	32.667	0.62322	32.456	32.065	32.688	-0.21135					18	11	2	0	0	0	0.019399	1	12079	12079		97.075	3.1912	1	25490000			12797	1054	7554	7597	12281	12281					0.019221552889121085
GPSGLPGPV	9	Unmodified	_GPSGLPGPV_					0	0	0		ENSG00000050767|ENST00000390654|COL23A1	ENSG00000050767|ENST00000390654|COL23A1	ENSG00000050767|ENST00000390654|COL23A1	MULTI-MSMS	HCT116MG_D190212_S4	4	780.4254760742188	1	780.42503	779.417754	0.94821	0.00074001	0.061004	4.7609E-05	1.0092	0.00078762	780.4248727262664	32.807	0.49043	32.428	32.157	32.647	-0.37923					22	9	3	0	0	0	0.031005	1	11925	11925		85.357	3.4927	1	29848000			12798	1054	7554	7597	12282	12282					0.019221552889121085
GPSGLPGPV	9	Unmodified	_GPSGLPGPV_					0	0	0		ENSG00000050767|ENST00000390654|COL23A1	ENSG00000050767|ENST00000390654|COL23A1	ENSG00000050767|ENST00000390654|COL23A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	780.42503	779.417754	0.84027	0.00065577	-0.015207	-1.1868E-05	0.82506	0.0006439	780.4249092480354	32.719	0.72915	32.434	31.935	32.664	-0.28511	-0.0054521	-6.035E-06	NaN	97.075	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32420000			12799	1054	7554	7597							0.019221552889121085
GPSGNLWTEK	10	Unmodified	_GPSGNLWTEK_					0	0	0		ENST00000301455.6_1_19:8438821-8439109:+|nuORF	ENST00000301455.6_1_19:8438821-8439109:+|nuORF	ENST00000301455.6_1_19:8438821-8439109:+|nuORF	MSMS	HCT116MG_D190212_S4	4	544.77294921875	2	544.772188	1087.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.744	1	16.577	16.077	17.077	-0.16664								0	0	0	0.94107	1	5504	5504		6.7232	0.51738	1				12800	7003	7555	7598	12283	12283					-0.010440354247748473
GPSGPAGPT	9	Unmodified	_GPSGPAGPT_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	740.3590087890625	1	740.357345	739.350068	0.9778	0.00072392	0.45291	0.00033531	1.4307	0.0010592	740.3576676431841	19.219	0.41704	18.849	18.627	19.044	-0.3695					11	7	2	0	0	0	0.0035556	1	6671	6671		172.91	49.81	1	4224800			12801	513;514	7556	7599	12284	12284					-0.030032946419055406
GPSGPAGPT	9	Unmodified	_GPSGPAGPT_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	740.3580932617188	1	740.357345	739.350068	0.77755	0.00057567	0.19867	0.00014708	0.97622	0.00072275	740.3574140510073	18.926	0.5198	18.739	18.453	18.973	-0.18674					12	9	2	0	0	0	0.003294	1	6375	6375		180.01	51.644	1	4962800			12802	513;514	7556	7599	12285	12285					-0.030032946419055406
GPSGPGQTHP	10	Unmodified	_GPSGPGQTHP_					0	0	0			REV__ENST00000493439.1_1_9:130494756-130497542:-|nuORF	REV__ENST00000493439.1_1_9:130494756-130497542:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	467.72210693359375	2	467.722498	933.430444	0.23343	0.00010918	0.71143	0.00033275	0.94486	0.00044193	467.7224782753359	19.231	0.4683	19.294	19.129	19.597	0.062777					10	8	2	0	0	0	0.35312	1	6605	6605		45.74	1.9675	1	1317500	+		12803	16062	7557	7600	12286	12286					-0.03893433318876305
GPSGPPGPA	9	Unmodified	_GPSGPPGPA_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;COL11A2|p.G956Wfs*11|1|0.1|ENSG00000204248|chr6:33171740-33171741|-/G|frameshift_variant	nc|ENSG00000204248|P13942-8|COL11A2;REV__nc|ENSG00000139219|P02458-1|COL2A1	REV__nc|ENSG00000139219|P02458-1|COL2A1	MULTI-SECPEP	HCT116MG_D190212_S4	4	736.32666015625	1	736.36243	735.355153	0.82985	0.00061107	0.14338	0.00010558	0.97323	0.00071665	736.3623496945105	19.841	0.82205	19.647	19.174	19.996	-0.19367					30	15	3	0	0	0	0.12926	1	6873	6873		46.021	0	1	11917000			12804	12253;6324	7558	7601	12287	12287					-0.02310990779290023
GPSGPPGPSGP	11	Unmodified	_GPSGPPGPSGP_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	HCT116MG_D190212_S3	3	453.55450439453125	2	453.719424	905.424296	0.16996	7.7115E-05	0.13514	6.1317E-05	0.3051	0.00013843	453.71937806733075	19.859	1.9783	19.91	18.649	20.627	0.051249					111	37	4	0	0	0	0.26142	1	6501	6501		24.991	0	1	80576000	+		12805	13941	7559	7602	12288	12288					-0.032199515503748444
GPSGPPGPSGP	11	Unmodified	_GPSGPPGPSGP_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-MSMS	HCT116MG_D190212_S4	4	453.7192077636719	2	453.719424	905.424296	0.28674	0.0001301	-0.034622	-1.5709E-05	0.25212	0.00011439	453.71931708398284	20.009	2.1734	19.816	18.55	20.724	-0.19368					109	41	4	0	0	0	0.69749	1	7110	7110		22.736	1.1993	1	70370000	+		12806	13941	7559	7602	12289	12289					-0.032199515503748444
GPSGPQGKP	9	Unmodified	_GPSGPQGKP_					0	0	0		ENSG00000168077|ENST00000301904|SCARA3	ENSG00000168077|ENST00000301904|SCARA3	ENSG00000168077|ENST00000301904|SCARA3	MULTI-MSMS	HCT116MG_D190212_S2	2	412.7170104980469	2	412.716685	823.418816	-0.22806	-9.4126E-05	0.39411	0.00016265	0.16604	6.8529E-05	412.71680477119094	15.558	0.52112	15.231	14.915	15.436	-0.32684					14	9	2	0	0	0	0.23138	1	5170	5170		37.974	1.9298	1	3586300			12807	4981	7560	7603	12290	12290					4.369657813185768E-05
GPSGPQGPVGS	11	Unmodified	_GPSGPQGPVGS_					0	0	0			REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	939.4572143554688	1	939.453036	938.445759	0.80861	0.00075965	0.1263	0.00011865	0.93491	0.0008783	939.4532768354122	24.961	0.93469	24.69	24.079	25.014	-0.27168					23	17	2	0	0	0	0.57532	1	8785	8785		38.176	9.094	1	5778500	+		12808	10240	7561	7604	12291	12291					-0.025925665216504967
GPSGPSEPP	9	Unmodified	_GPSGPSEPP_					0	0	0		ENSG00000248767|ENST00000506382|FOXL3	ENSG00000248767|ENST00000506382|FOXL3	ENSG00000248767|ENST00000506382|FOXL3	MULTI-MSMS	HCT116MG_D190212_S3	3	412.6927185058594	2	412.692875	823.371197	-0.033735	-1.3922E-05	0.010485	4.3269E-06	-0.023251	-9.5954E-06	412.692786929074	20.254	1.1456	20.302	19.686	20.832	0.048107					38	21	2	0	0	0	0.035402	1	6875	6875		81.864	3.8797	1	3197500			12809	6575	7562	7605	12292	12292					-0.04755329333045211
GPSGPSGCPGE	11	Unmodified	_GPSGPSGCPGE_					0	0	0			REV__CD93|p.A315Gfs*34|1|0.31|ENSG00000125810|chr20:23085249-23085250|-/C|frameshift_variant	REV__CD93|p.A315Gfs*34|1|0.31|ENSG00000125810|chr20:23085249-23085250|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	472.6927795410156	2	472.692549	943.370546	0.29302	0.00013851	0.38434	0.00018168	0.67736	0.00032018	472.6927841559179	20.021	0.9258	19.828	19.226	20.152	-0.19367					22	17	2	0	0	0	0.70073	1	6816	6816		21.537	1.0834	1	2652800	+		12810	10129	7563	7606	12293	12293					-0.10340492044394978
GPSGPSGCPGE	11	Unmodified	_GPSGPSGCPGE_					0	0	0			REV__CD93|p.A315Gfs*34|1|0.31|ENSG00000125810|chr20:23085249-23085250|-/C|frameshift_variant	REV__CD93|p.A315Gfs*34|1|0.31|ENSG00000125810|chr20:23085249-23085250|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	472.7079162597656	2	472.692549	943.370546	0.29302	0.00013851	0.38434	0.00018168	0.67736	0.00032018	472.6927841559179	20.021	0.9258	19.828	19.226	20.152	-0.19367					22	17	2	0	0	0	0.33998	1	6629	6629		21.537	5.6898	1	2652800	+		12811	10129	7563	7606	12294	12294					-0.10340492044394978
GPSGPVAAGLV	11	Unmodified	_GPSGPVAAGLV_					0	0	0			REV__SCNN1D|p.S19Lfs*90|1|0.29|ENSG00000162572|chr1:1284070-1284071|-/G|frameshift_variant	REV__SCNN1D|p.S19Lfs*90|1|0.29|ENSG00000162572|chr1:1284070-1284071|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	462.1466064453125	2	462.761092	923.507631	0.010543	4.8791E-06	0.15398	7.1256E-05	0.16452	7.6135E-05	462.76105945074784	29.683	0.26003	29.334	29.189	29.449	-0.34921					6	4	2	0	0	0	0.35307	1	10682	10682		13.906	7.7003	1	2254500	+		12812	17497	7564	7607	12295	12295					0.04281784897477792
GPSGPVAAGLV	11	Unmodified	_GPSGPVAAGLV_					0	0	0			REV__SCNN1D|p.S19Lfs*90|1|0.29|ENSG00000162572|chr1:1284070-1284071|-/G|frameshift_variant	REV__SCNN1D|p.S19Lfs*90|1|0.29|ENSG00000162572|chr1:1284070-1284071|-/G|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	462.761092	923.507631	0.49663	0.00022982	-0.23932	-0.00011075	0.25732	0.00011908	462.76080118225343	29.398	0.31269	29.176	28.994	29.306	-0.22195	-0.078857	-0.00014319	NaN	13.906	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8132200	+		12813	17497	7564	7607							0.04281784897477792
GPSGPVGPA	9	Unmodified	_GPSGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S2	2	738.3794555664062	1	738.37808	737.370804	1.1284	0.00083316	-0.025863	-1.9097E-05	1.1025	0.00081406	738.3780275548257	22.462	0.25889	22.077	21.947	22.206	-0.3852					8	4	2	0	0	0	0.0082751	1	7973	7973		117.6	28.172	1	14972000			12814	4715	7565	7608	12296	12296					-0.00838704262241663
GPSGPVGPA	9	Unmodified	_GPSGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	738.378662109375	1	738.37808	737.370804	0.42543	0.00031413	0.481	0.00035516	0.90643	0.00066929	738.3783492429135	22.168	0.67714	22.169	21.938	22.615	0.00074387					22	12	3	0	0	0	0.005725	1	7746	7746		131.3	29.576	1	19072000			12815	4715	7565	7608	12297	12297					-0.00838704262241663
GPSGPVGPA	9	Unmodified	_GPSGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	738.3786010742188	1	738.37808	737.370804	0.81211	0.00059964	0.024347	1.7977E-05	0.83646	0.00061762	738.3780537498154	22.342	0.46741	22.114	21.936	22.403	-0.22777					15	8	3	0	0	0	0.005725	1	7750	7750		131.3	37.414	1	14625000			12816	4715	7565	7608	12298	12298					-0.00838704262241663
GPSGPVGPA	9	Unmodified	_GPSGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	738.3788452148438	1	738.37808	737.370804	0.64362	0.00047524	0.42201	0.0003116	1.0656	0.00078684	738.3782868039199	23.232	0.31558	22.985	22.8	23.116	-0.24775					8	5	2	0	0	0	0.026974	1	8129	8129		89.427	22.083	1	3827000			12817	4715	7565	7608	12299	12299					-0.00838704262241663
GPSGPVGPAG	10	Unmodified	_GPSGPVGPAG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	795.39990234375	1	795.399544	794.392267	0.7112	0.00056569	-0.2589	-0.00020593	0.4523	0.00035976	795.4000331784481	22.134	0.31232	22.135	21.938	22.25	0.00074577					8	5	2	0	0	0	0.026842	1	7759	7759		108	29.848	1	2273400			12818	4715	7566	7609	12300	12300					-0.013153192335153108
GPSGPVGPAG	10	Unmodified	_GPSGPVGPAG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	795.3995361328125	1	795.399544	794.392267	0.91902	0.00073098	-0.65362	-0.00051989	0.26539	0.00021109	795.3989099473162	21.397	0.3119	21.179	21.01	21.322	-0.21832					8	5	2	0	0	0	0.02258	1	7394	7394		115.69	22.87	1	2911700			12819	4715	7566	7609	12301	12301					-0.013153192335153108
GPSGPVGPAG	10	Unmodified	_GPSGPVGPAG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	795.3992919921875	1	795.399544	794.392267	0.8786	0.00069884	-0.69539	-0.00055311	0.18322	0.00014573	795.3990355457763	22.293	0.51928	22.065	21.832	22.351	-0.22777					12	9	2	0	0	0	0.019944	1	7742	7742		120.45	31.547	1	2041300			12820	4715	7566	7609	12302	12302					-0.013153192335153108
GPSGQGNPVQA	11	Unmodified	_GPSGQGNPVQA_					0	0	0			REV__ENSG00000167543|ENST00000301057|TP53I13	REV__ENSG00000167543|ENST00000301057|TP53I13	MSMS	HCT116MG_D190212_S3	3	506.2469177246094	2	506.246338	1010.47812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.665	1	16.75	16.25	17.25	0.085068								0	0	0	0.86121	1	5546	5546		24.991	0.97039	1		+		12821	13150	7567	7610	12303	12303					-0.026697791186620634
GPSGRQGPTGP	11	Unmodified	_GPSGRQGPTGP_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	506.2216491699219	2	505.75433	1009.49411	0.2191	0.00011081	0.73667	0.00037258	0.95577	0.00048339	505.754773347645	16.397	0.25999	16.482	16.341	16.601	0.085423					7	4	2	0	0	0	0.58525	1	5426	5426		37.075	2.8529	1	1060000	+		12822	13219	7568	7611	12304	12304					-0.010260728817570453
GPSGRQGPTGP	11	Unmodified	_GPSGRQGPTGP_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	505.75433	1009.49411	0.2191	0.00011081	0.73667	0.00037258	0.95577	0.00048339	505.754773347645	16.397	0.25999	16.482	16.341	16.601	0.085423	-0.019533	-5.0524E-05	NaN	37.075	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1060000	+		12823	13219	7568	7611							-0.010260728817570453
GPSGVPGQP	9	Unmodified	_GPSGVPGQP_					0	0	0		COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant;COL4A5|p.F1520Vfs*34|1|0.04|ENSG00000188153|chrX:108692794-108692795|-/GTAATAAATATACTATA|frameshift_variant;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000483338.1_1_X:107826116-107869594:+|nuORF	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	398.2035827636719	2	398.20341	794.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.105	1	22.106	21.606	22.606	0.00074577								0	0	0	0.46109	1	7738	7738		30.637	3.7529	1				12824	525	7569	7612	12305	12305					-0.013153192335153108
GPSGVPGQP	9	Unmodified	_GPSGVPGQP_					0	0	0		COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant;COL4A5|p.F1520Vfs*34|1|0.04|ENSG00000188153|chrX:108692794-108692795|-/GTAATAAATATACTATA|frameshift_variant;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000483338.1_1_X:107826116-107869594:+|nuORF	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	398.2020568847656	2	398.20341	794.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.916	1	27.728	27.228	28.228	-0.18847								0	0	0	0.69648	1	10081	10081		19.257	8.4331	1				12825	525	7569	7612	12306	12306					-0.013153192335153108
GPSGVPGQP	9	Unmodified	_GPSGVPGQP_					0	0	0		COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant;COL4A5|p.F1520Vfs*34|1|0.04|ENSG00000188153|chrX:108692794-108692795|-/GTAATAAATATACTATA|frameshift_variant;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000483338.1_1_X:107826116-107869594:+|nuORF	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	398.71868896484375	2	398.20341	794.392267	0.12017	4.7853E-05	-0.263	-0.00010473	-0.14283	-5.6875E-05	398.2031876020282	21.897	0.51901	21.679	21.322	21.841	-0.21832					11	9	2	0	0	0	0.20889	1	7492	7492		24.021	3.5669	1	1724300			12826	525	7569	7612	12307	12307					-0.013153192335153108
GPSHHSYMNA	10	Unmodified	_GPSHHSYMNA_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	HCT116MG_D190212_S3	3	550.2177124023438	2	550.73254	1099.45053	0.35539	0.00019573	0.89764	0.00049436	1.253	0.00069009	550.7328115482155	18.207	0.20842	18.283	18.153	18.361	0.076334					5	3	2	0	0	0	0.3029	1	6121	6121		6.7232	0	1	1757300			12827	1428	7570	7613	12308	12308					-0.09522005650524079
GPSHLRDP	8	Unmodified	_GPSHLRDP_					0	0	0			REV__ENST00000481221.6_1_3:9437193-9439148:-|nuORF	REV__ENST00000481221.6_1_3:9437193-9439148:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	439.7275085449219	2	439.727584	877.440614	0.12932	5.6864E-05	-0.16381	-7.2032E-05	-0.034494	-1.5168E-05	439.72751342695045	15.859	0.78086	15.944	15.404	16.185	0.085423					22	14	2	0	0	0	0.73076	1	5195	5195		19.439	3.6708	1	1286900	+		12828	15953	7571	7614	12309	12309					-0.0030082559362654138
GPSHSQQP	8	Unmodified	_GPSHSQQP_					0	0	0			REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	418.7040100097656	2	419.196116	836.37768	-0.13797	-5.7837E-05	0.57993	0.00024311	0.44196	0.00018527	419.1962505465133	17.166	0.36418	17.251	17.016	17.381	0.084467					11	6	2	0	0	0	0.29766	1	5707	5707		14.582	0	1	3877000	+		12829	15150	7572	7615	12310	12310					-0.047053913816625936
GPSHSQQP	8	Unmodified	_GPSHSQQP_					0	0	0			REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	MSMS	HCT116MG_D190212_S4	4	419.1959228515625	2	419.196116	836.37768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.91	1	17.735	17.235	18.235	-0.17501								0	0	0	0.8837	1	5975	5975		15.768	2.2603	1		+		12830	15150	7572	7615	12311	12311					-0.047053913816625936
GPSHSQQP	8	Unmodified	_GPSHSQQP_					0	0	0			REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	418.7037353515625	2	419.196116	836.37768	-0.21907	-9.1833E-05	0.36983	0.00015503	0.15076	6.3197E-05	419.1962345617146	17.265	0.41329	17.095	16.863	17.277	-0.17047					17	7	3	0	0	0	0.29766	1	5696	5696		9.3474	0	1	2582000	+		12831	15150	7572	7615	12312	12312					-0.047053913816625936
GPSLGPDPS	9	Unmodified	_GPSLGPDPS_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000320580.8_1_11:66011432-66012044:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-MSMS	HCT116MG_D190212_S3	3	826.3948364257812	1	826.394124	825.386848	0.99162	0.00081947	-0.11023	-9.1095E-05	0.88139	0.00072838	826.3939916534038	25.964	1.3025	25.836	24.974	26.276	-0.12795					37	24	2	0	0	0	0.071351	1	9137	9137		64.236	18.215	1	4093400			12832	9557	7573	7616	12313	12313					-0.032830428159968505
GPSLGPDPS	9	Unmodified	_GPSLGPDPS_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000320580.8_1_11:66011432-66012044:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-MSMS	HCT116MG_D190212_S4	4	826.3951416015625	1	826.394124	825.386848	0.81938	0.00067713	0.11955	9.8794E-05	0.93893	0.00077592	826.3941267517412	26.246	1.4048	25.945	24.881	26.286	-0.30029					42	26	2	0	0	0	0.11731	2	9105	9105;9351		54.774	16.8	1	2712200			12833	9557	7573	7616	12314;12315	12314					-0.032830428159968505
GPSLWSPQP	9	Unmodified	_GPSLWSPQP_					0	0	0		ENST00000580842.1_1_17:43663677-43664292:+|nuORF	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	MSMS	HCT116MG_D190212_S4	4	484.7437744140625	2	484.745442	967.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.717	1	20.51	20.01	21.01	-0.20664								0	0	0	0.50556	1	7109	7109		28.487	0.85804	1				12834	8953	7574	7617	12316	12316					-0.008707881366262882
GPSNPPGA	8	Unmodified	_GPSNPPGA_					0	0	0		WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2	WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	696.3317260742188	1	696.33113	695.323853	0.70024	0.0004876	-0.20066	-0.00013972	0.49958	0.00034787	696.33090486908	17.301	0.78246	16.951	16.561	17.343	-0.34933					22	14	2	0	0	0	0.10976	1	5894	5894		92.822	0	1	6533000			12835	4757	7575	7618	12317	12317					-0.03599563813384066
GPSNVCVQEC	10	Unmodified	_GPSNVCVQEC_					0	0	0			REV__ENST00000610073.1_1_13:114523839-114538639:-|nuORF	REV__ENST00000610073.1_1_13:114523839-114538639:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	518.2153930664062	2	518.215334	1034.41612	0.22793	0.00011812	-0.092874	-4.8129E-05	0.13506	6.9989E-05	518.2152675412029	37.091	0.38623	36.706	36.539	36.925	-0.38486					15	7	3	0	0	0	0.83158	1	13584	13584		9.3831	1.473	1	23683000	+		12836	13742	7576	7619	12318	12318					-0.09971589853671503
GPSPAYPHLAD	11	Unmodified	_GPSPAYPHLAD_					0	0	0		ENST00000394430.5_1_11:64511793-64512018:-|nuORF	ENST00000394430.5_1_11:64511793-64512018:-|nuORF	ENST00000394430.5_1_11:64511793-64512018:-|nuORF	MSMS	HCT116MG_D190212_S3	3	562.77978515625	2	562.772188	1123.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.567	1	22.548	22.048	23.048	-0.018869								0	0	0	0.89672	1	7924	7924		20.415	3.3016	1				12837	7635	7577	7620	12319	12319					-0.027000354247547875
GPSPGHEEALR	11	Unmodified	_GPSPGHEEALR_					0	0	0			REV__DQX1|p.Y12H|1|0.2|ENSG00000144045|chr2:74525696-74525696|A/G|missense_variant	REV__DQX1|p.Y12H|1|0.2|ENSG00000144045|chr2:74525696-74525696|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	575.2864379882812	2	575.285994	1148.55744	0.38822	0.00022334	-0.11601	-6.6737E-05	0.27221	0.0001566	575.2856512375333	22.692	0.71671	22.673	22.439	23.156	-0.018869					23	13	3	0	0	0	0.6977	1	7943	7943		22.658	2.2436	1	8205100	+		12838	10409	7578	7621	12320	12320					-0.010901321645405915
GPSPGPGPSPG	11	Unmodified	_GPSPGPGPSPG_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA4|p.I355Sfs*56|1|0.42|ENSG00000127616|chr19:10987864-10987864|C/-|frameshift_variant;SMARCA4|p.P109Rfs*194|1|0.35|ENSG00000127616|chr19:10985372-10985372|C/-|frameshift_variant;SMARCA4|p.P49Afs*33|1|0.24|ENSG00000127616|chr19:10984292-10984293|-/G|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;REV__nc|ENSG00000127616|P51532-5|SMARCA4;REV__nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000127616|ENST00000344626|SMARCA4	MULTI-MSMS	HCT116MG_D190212_S4	4	453.7195129394531	2	453.719424	905.424296	0.28674	0.0001301	-0.034622	-1.5709E-05	0.25212	0.00011439	453.71931708398284	20.009	2.1734	19.816	18.55	20.724	-0.19368					109	41	4	0	0	0	0.54124	1	6417	6417		41.956	0.11592	1	70370000			12839	2974;11861;10862	7579	7622	12321	12321					-0.032199515503748444
GPSPGPVWYRR	11	Unmodified	_GPSPGPVWYRR_					0	0	0		ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant	ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant	ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	636.3350830078125	2	636.335821	1270.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.721	1	28.381	27.881	28.881	-0.34059								0	0	0	0.9387	1	10341	10341		12.241	3.4953	1				12840	18726	7580	7623	12322	12322					0.032587302400543194
GPSPGTPSP	9	Unmodified	_GPSPGTPSP_					0	0	0		nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C	nc|ENSG00000143434|Q9H3T2-2|SEMA6C	nc|ENSG00000143434|Q9H3T2-2|SEMA6C	MULTI-MSMS	HCT116MG_D190212_S4	4	796.3843383789062	1	796.383559	795.376283	0.84216	0.00067068	-3.8397	-0.0030579	-2.9976	-0.0023872	796.3829883802154	26.274	0.62439	25.973	25.661	26.286	-0.30087					15	11	2	0	0	0	0.2853	1	9381	9381		32.305	0	1	1534000			12841	9485	7581	7624	12323	12323					-0.029590254704316976
GPSPGYQS	8	Unmodified	_GPSPGYQS_					0	0	0			REV__ENST00000307808.10_1_4:87928343-87928421:+|nuORF	REV__ENST00000307808.10_1_4:87928343-87928421:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	396.67974853515625	2	396.679768	791.344983	0.10091	4.003E-05	-0.52074	-0.00020657	-0.41983	-0.00016654	396.67948552193934	20.256	0.88368	20.055	19.573	20.456	-0.20133					24	16	2	0	0	0	0.62424	1	6861	6861		30.225	0	1	2206100	+		12842	14818	7582	7625	12324	12324					-0.05903598504517049
GPSPTSLPLRY	11	Unmodified	_GPSPTSLPLRY_					0	0	0			REV__UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	REV__UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	594.3233032226562	2	594.324588	1186.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.906	1	24.637	24.137	25.137	-0.26881								0	0	0	0.94416	1	8799	8799		9.3831	5.0539	1		+		12843	12762	7583	7626	12325	12325					0.048770860518061454
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	HCT116MG_D190212_S1	1	589.7943725585938	2	589.793652	1177.57275	0.80147	0.0004727	-0.039504	-2.3299E-05	0.76196	0.0004494	589.7935835085474	17.281	0.26086	17.281	17.15	17.411	0					6	4	2	0	0	0	0.33066	1	5900	5900		47.749	16.48	1	2045100	+		12844	11429	7584	7627	12326	12326					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	HCT116MG_D190212_S1	1	589.79345703125	2	589.793652	1177.57275	0.71122	0.00041947	-0.0020627	-1.2166E-06	0.70916	0.00041826	589.7932964113903	18.058	0.72993	18.058	17.568	18.298	0					22	13	3	0	0	0	0.23641	1	6155	6155		56.177	26.336	1	5073000	+		12845	11429	7584	7627	12327	12327					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	HCT116MG_D190212_S2	2	589.7940673828125	2	589.793652	1177.57275	0.57406	0.00033858	0.2974	0.0001754	0.87146	0.00051398	589.7935172775559	17.739	0.46997	17.382	17.127	17.597	-0.35647					15	8	3	0	0	0	0.30623	1	6039	6039		49.933	20.092	1	17876000	+		12846	11429	7584	7627	12328	12328					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	HCT116MG_D190212_S2	2	589.7938842773438	2	589.793652	1177.57275	0.24004	0.00014157	0.9482	0.00055924	1.1882	0.00070082	589.7937646673242	18.454	0.67778	18.091	17.643	18.321	-0.36325					28	12	3	0	0	0	0.33066	1	6290	6290		47.749	13.347	1	33946000	+		12847	11429	7584	7627	12329	12329					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	HCT116MG_D190212_S3	3	589.7939453125	2	589.793652	1177.57275	0.38974	0.00022987	0.75192	0.00044348	1.1417	0.00067335	589.7937061957224	16.937	0.57245	17.021	16.704	17.277	0.084467					29	10	4	0	0	0	0.30623	1	5608	5608		49.933	20.092	1	24978000	+		12848	11429	7584	7627	12330	12330					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	HCT116MG_D190212_S3	3	589.7929077148438	2	589.793652	1177.57275	0.27637	0.000163	0.64444	0.00038009	0.92081	0.00054309	589.7936829968763	17.737	0.93633	17.818	17.273	18.21	0.081358					44	17	4	0	0	0	0.30623	2	5841	5841;6064		49.933	18.665	1	48192000	+		12849	11429	7584	7627	12331;12332	12331					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-SECPEP	HCT116MG_D190212_S3	3	590.2830200195312	2	589.793652	1177.57275	0.27637	0.000163	0.64444	0.00038009	0.92081	0.00054309	589.7936829968763	17.737	0.93633	17.818	17.273	18.21	0.081358					44	17	4	0	0	0	0.26807	1	6091	6091		34.402	19.153	1	48192000	+		12850	11429	7584	7627	12333	12333					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	HCT116MG_D190212_S4	4	589.7938842773438	2	589.793652	1177.57275	0.25165	0.00014842	1.0457	0.00061676	1.2974	0.00076518	589.7937654681349	17.213	0.67293	17.043	16.656	17.329	-0.17047					26	12	3	0	0	0	0.30623	1	5715	5715		49.933	9.6938	1	21340000	+		12851	11429	7584	7627	12334	12334					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	HCT116MG_D190212_S4	4	589.7938842773438	2	589.793652	1177.57275	0.46747	0.00027571	0.71254	0.00042025	1.18	0.00069596	589.7936284334727	17.993	1.0368	17.818	17.272	18.309	-0.17501					46	19	4	0	0	0	0.30623	1	5947	5947		49.933	15.531	1	33580000	+		12852	11429	7584	7627	12335	12335					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-SECPEP	HCT116MG_D190212_S4	4	590.28515625	2	589.793652	1177.57275	0.46747	0.00027571	0.71254	0.00042025	1.18	0.00069596	589.7936284334727	17.993	1.0368	17.818	17.272	18.309	-0.17501					46	19	4	0	0	0	0.26351	1	6157	6157		29.082	9.8246	1	33580000	+		12853	11429	7584	7627	12336	12336					-0.008932653673127788
GPSQFTKREE	10	Unmodified	_GPSQFTKREE_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	589.793652	1177.57275	0.80147	0.0004727	-0.039504	-2.3299E-05	0.76196	0.0004494	589.7935835085474	17.281	0.26086	17.281	17.15	17.411	0	0.098838	-0.00066659	NaN	49.933	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2045100	+		12854	11429	7584	7627							-0.008932653673127788
GPSQNNLYR	9	Unmodified	_GPSQNNLYR_					0	0	0		ZNF563|p.K26N|1|0.2|ENSG00000188868|chr19:12322637-12322637|C/A|missense_variant	ZNF563|p.K26N|1|0.2|ENSG00000188868|chr19:12322637-12322637|C/A|missense_variant	ZNF563|p.K26N|1|0.2|ENSG00000188868|chr19:12322637-12322637|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7622680664062	2	524.762155	1047.50976	-0.23223	-0.00012187	0.36145	0.00018967	0.12922	6.7808E-05	524.7623223619275	16.474	0.78773	16.309	15.821	16.609	-0.16538					35	15	4	0	0	0	0.70732	1	5294	5294		4.756	0.42677	1	2329500			12855	18732	7585	7628	12337	12337					-0.012097863647341
GPSQPPMGVP	10	Unmodified	_GPSQPPMGVP_					0	0	0			REV__ENST00000442773.1_1_21:40752424-40752547:+|nuORF	REV__ENST00000442773.1_1_21:40752424-40752547:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.7425537109375	2	483.739302	965.464052	0.12892	6.2362E-05	1.4774	0.00071465	1.6063	0.00077702	483.741350983567	34.926	0.5192	34.629	34.388	34.907	-0.29707					11	9	2	0	0	0	0.76634	1	12929	12929		14.838	2.3067	1	2264800	+		12856	15656	7586	7629	12338	12338					-0.020061478713159886
GPSQQYSSGP	10	Unmodified	_GPSQQYSSGP_					0	0	0			REV__ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant	REV__ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	504.7279052734375	2	504.225071	1006.43559	0.25583	0.00012899	0.98597	0.00049715	1.2418	0.00062614	504.225459066221	17.891	0.781	17.973	17.794	18.575	0.081358					23	14	2	0	0	0	0.81435	2	6093	6093;6145		10.824	3.5347	1	2663900	+		12857	13948	7587	7630	12339;12340	12339					-0.06737174246893574
GPSQSPRQG	9	Unmodified	_GPSQSPRQG_					0	0	0			REV__ENST00000580123.5_1_17:73083883-73089847:+|nuORF	REV__ENST00000580123.5_1_17:73083883-73089847:+|nuORF	MSMS	HCT116MG_D190212_S4	4	457.65667724609375	2	457.227948	912.441343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.486	1	42.11	41.61	42.61	-0.37565								0	0	0	0.76694	1	15617	15617		11.64	0	1		+		12858	15708	7588	7631	12341	12341					-0.018380309445660714
GPSRCDCS	8	Unmodified	_GPSRCDCS_					0	0	0			REV__RDM1|p.I177V|1|0.16|ENSG00000278023|chr17:35924643-35924643|T/C|missense_variant	REV__RDM1|p.I177V|1|0.16|ENSG00000278023|chr17:35924643-35924643|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	824.3032836914062	1	824.302549	823.295272	0.89452	0.00073735	1.0057	0.00082899	1.9002	0.0015663	824.303190430677	21.717	0.52508	21.735	21.483	22.008	0.018446					15	9	2	0	0	0	0.84759	2	7549	7522;7549		5.7604	1.4312	1	2641800	+		12859	14468	7589	7632	12342;12343	12343					-0.12344372776487944
GPSRHPSLIS	10	Unmodified	_GPSRHPSLIS_					0	0	0		ENST00000533627.5_1_11:118404537-118405292:+|nuORF;nc|ENSG00000149582|Q86YD3-3|TMEM25;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	ENST00000533627.5_1_11:118404537-118405292:+|nuORF	ENST00000533627.5_1_11:118404537-118405292:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	525.748291015625	2	525.788173	1049.56179	0.25185	0.00013242	-0.19468	-0.00010236	0.057164	3.0056E-05	525.7882215215927	23.371	0.78341	23.123	22.696	23.48	-0.24775					25	14	2	0	0	0	0.30526	1	8271	8271		10.074	0	1	3933600			12860	4068	7590	7633	12344	12344					0.03899377049060604
GPSRNTVFQET	11	Unmodified	_GPSRNTVFQET_					0	0	0		ENST00000355014.6_1_1:156147042-156147216:+|nuORF	ENST00000355014.6_1_1:156147042-156147216:+|nuORF	ENST00000355014.6_1_1:156147042-156147216:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	618.8077392578125	2	618.304384	1234.59421	0.15846	9.7977E-05	1.0159	0.00062815	1.1744	0.00072612	618.3043289602708	17.206	0.4164	17.29	17.068	17.485	0.084467					10	7	2	0	0	0	0.70073	1	5808	5808		21.537	3.3906	1	1799900			12861	7286	7591	7634	12345	12345					-0.013698803386205327
GPSSADPPP	9	Unmodified	_GPSSADPPP_					0	0	0			REV__nc|ENSG00000133794|O00327-4|BMAL1	REV__nc|ENSG00000133794|O00327-4|BMAL1	MULTI-MSMS	HCT116MG_D190212_S3	3	412.6929626464844	2	412.692875	823.371197	-0.033735	-1.3922E-05	0.010485	4.3269E-06	-0.023251	-9.5954E-06	412.692786929074	20.254	1.1456	20.302	19.686	20.832	0.048107					38	21	2	0	0	0	0.10839	1	7192	7192		56.541	12.134	1	3197500	+		12862	12036	7592	7635	12346	12346					-0.04755329333056579
GPSSHLAQGQP	11	Unmodified	_GPSSHLAQGQP_					0	0	0			REV__ENST00000602976.1_1_3:9799239-9799572:+|nuORF	REV__ENST00000602976.1_1_3:9799239-9799572:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	540.26953125	2	539.767437	1077.52032	-0.1721	-9.2894E-05	0.46865	0.00025296	0.29655	0.00016007	539.7676512183044	16.18	1.307	16.017	15.563	16.87	-0.16364					47	25	2	0	0	0	0.73364	1	5561	5561		9.3831	0	1	1488500	+		12863	16759	7593	7636	12347	12347					-0.01533803710299253
GPSSMLDLHKP	11	Unmodified	_GPSSMLDLHKP_					0	0	0			REV__ENST00000494660.6_1_2:71356995-71357340:-|nuORF	REV__ENST00000494660.6_1_2:71356995-71357340:-|nuORF	MSMS	HCT116MG_D190212_S4	4	591.3016357421875	2	591.302798	1180.59104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.92	1	30.556	30.056	31.056	-0.36416								0	0	0	0.94012	1	11200	11200		11.495	0	1		+		12864	16078	7594	7637	12348	12348					0.007971532830197248
GPSSQPSREPG	11	Unmodified	_GPSSQPSREPG_					0	0	0			REV__ENST00000441095.2_1_21:47018474-47018663:+|nuORF	REV__ENST00000441095.2_1_21:47018474-47018663:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	550.2177124023438	2	549.762352	1097.51015	0.30339	0.00016679	0.50573	0.00027803	0.80912	0.00044482	549.7626884916903	16.698	0.46823	16.782	16.548	17.016	0.084467					12	8	2	0	0	0	0.71776	1	5625	5625		15.248	6.6552	1	3993500	+		12865	15646	7595	7638	12349	12349					-0.034704114355236015
GPSSRDREPEA	11	Unmodified	_GPSSRDREPEA_					0	0	0		RNF40|p.G603D|1|0.28|ENSG00000103549|chr16:30768359-30768359|G/A|missense_variant	RNF40|p.G603D|1|0.28|ENSG00000103549|chr16:30768359-30768359|G/A|missense_variant	RNF40|p.G603D|1|0.28|ENSG00000103549|chr16:30768359-30768359|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	600.78466796875	2	600.783815	1199.55308	0.85258	0.00051221	1.1386	0.00068406	1.9912	0.0011963	600.784398686372	17.228	0.46512	17.058	16.76	17.225	-0.17047					12	8	2	0	0	0	0.72792	1	5670	5670		11.495	2.1116	1	1720700			12866	18117	7596	7639	12350	12350					-0.03871641378100321
GPSSRDREPEA	11	Unmodified	_GPSSRDREPEA_					0	0	0		RNF40|p.G603D|1|0.28|ENSG00000103549|chr16:30768359-30768359|G/A|missense_variant	RNF40|p.G603D|1|0.28|ENSG00000103549|chr16:30768359-30768359|G/A|missense_variant	RNF40|p.G603D|1|0.28|ENSG00000103549|chr16:30768359-30768359|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	601.28662109375	2	600.783815	1199.55308	1.0693	0.00064242	0.33321	0.00020019	1.4025	0.0008426	600.7839352817276	18.012	0.51963	17.837	17.428	17.948	-0.17501					15	9	2	0	0	0	0.71532	1	6002	6002		16.149	1.7437	1	2178200			12867	18117	7596	7639	12351	12351					-0.03871641378100321
GPSTAEEFVR	10	Unmodified	_GPSTAEEFVR_					0	0	0			REV__nc|ENSG00000121104|Q9C073-2|FAM117A	REV__nc|ENSG00000121104|Q9C073-2|FAM117A	MULTI-MSMS	HCT116MG_D190212_S4	4	546.3291015625	2	546.769645	1091.52474	0.33208	0.00018157	0.67099	0.00036688	1.0031	0.00054845	546.7696228185479	18.008	0.62232	17.833	17.48	18.102	-0.17501					13	11	2	0	0	0	0.81435	1	5943	5943		10.824	1.4408	1	825260	+		12868	11709	7597	7640	12352	12352					-0.017363392873676275
GPSTSTRTGPQ	11	Unmodified	_GPSTSTRTGPQ_					0	0	0			REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	544.7703247070312	2	544.770177	1087.5258	0.52239	0.00028458	0.24798	0.00013509	0.77037	0.00041967	544.770048560307	20.736	0.25978	20.526	20.396	20.656	-0.20959					6	4	2	0	0	0	0.72373	1	7143	7143		13.042	0.51092	1	2238000	+		12869	17631	7598	7641	12353	12353					-0.014461249184705594
GPSVDPWGGTP	11	Unmodified	_GPSVDPWGGTP_					0	0	0		EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant;EPN1|p.P456Hfs*33|1|0.17|ENSG00000063245|chr19:55694823-55694823|C/-|frameshift_variant;nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1	EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant	EPN1|p.T467Pfs*22|1|0.36|ENSG00000063245|chr19:55694854-55694854|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	535.25	2	535.251089	1068.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.8	1	25.672	25.172	26.172	-0.12795								0	0	0	0.93717	1	9228	9228		13.042	2.2185	1				12870	1131	7599	7642	12354	12354					-0.043880108331450174
GPSVSSRPNSP	11	Unmodified	_GPSVSSRPNSP_					0	0	0		ENST00000370602.5_2_10:99619287-99623717:+|nuORF	ENST00000370602.5_2_10:99619287-99623717:+|nuORF	ENST00000370602.5_2_10:99619287-99623717:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	543.8544921875	2	542.772719	1083.53089	0.44335	0.00024064	0.076358	4.1445E-05	0.51971	0.00028208	542.772761311428	18.716	0.62491	18.786	18.406	19.031	0.069159					26	11	3	0	0	0	0.69749	1	6356	6356		22.736	2.2827	1	9631700			12871	7428	7600	7643	12355	12355					-0.007538210558550418
GPSVWKKRRES	11	Unmodified	_GPSVWKKRRES_					0	0	0			REV__ENST00000517389.5_1_8:103954275-103989979:+|nuORF	REV__ENST00000517389.5_1_8:103954275-103989979:+|nuORF	MSMS	HCT116MG_D190212_S4	4	665.3732299804688	2	665.372935	1328.73132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.29	1	18.111	17.611	18.611	-0.17924								0	0	0	0.95023	1	6129	6129		6.2058	0	1		+		12872	16213	7601	7644	12356	12356					0.08010073331593048
GPSYLKNRLP	10	Unmodified	_GPSYLKNRLP_					0	0	0			REV__ENST00000563829.5_1_15:75145788-75146232:-|nuORF	REV__ENST00000563829.5_1_15:75145788-75146232:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	382.2206115722656	3	382.220624	1143.64004	-0.19169	-7.3268E-05	0.2612	9.9837E-05	0.069513	2.6569E-05	382.22058233763414	24.267	0.62467	24.206	23.739	24.363	-0.061449					29	11	4	0	0	0	0.7199	1	8508	8508		18.721	2.1553	1	22465000	+		12873	16518	7602	7645	12357	12357					0.0739680963426963
GPSYSNNLA	9	Unmodified	_GPSYSNNLA_					0	0	0		nc|ENSG00000143365|P51449-2|RORC;ENSG00000143365|ENST00000318247|RORC	nc|ENSG00000143365|P51449-2|RORC	nc|ENSG00000143365|P51449-2|RORC	MULTI-MSMS	HCT116MG_D190212_S4	4	462.1466369628906	2	461.716882	921.41921	0.24264	0.00011203	-0.14477	-6.6843E-05	0.097873	4.5189E-05	461.71691123833483	24.438	0.36312	24.169	23.978	24.341	-0.26881					10	6	2	0	0	0	0.57626	1	8608	8608		12.532	0.89125	1	2323400			12874	3802	7603	7646	12358	12358					-0.04464255413006413
GPTDAFEF	8	Unmodified	_GPTDAFEF_					0	0	0			REV__nc|ENSG00000155066|Q8N271-3|PROM2	REV__nc|ENSG00000155066|Q8N271-3|PROM2	MSMS	HCT116MG_D190212_S4	4	442.1971130371094	2	442.195251	882.375948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.425	1	49.063	48.563	49.563	-0.36213								0	0	0	0.8837	1	18332	18332		12.532	3.1841	1		+		12875	12692	7604	7647	12359	12359					-0.06994445190287024
GPTDEDEKYY	10	Unmodified	_GPTDEDEKYY_					0	0	0		tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	609.7609252929688	2	608.753858	1215.49316	0.49186	0.00029942	2.5247	0.0015369	3.0166	0.0018364	608.7552909907753	29.909	0.4649	29.608	29.34	29.805	-0.30096					13	8	3	0	0	0	0.87641	1	11042	11042		4.3292	0.73274	1	26595000			12876	18392	7605	7648	12360	12360					-0.10596376831995258
GPTEVLNQ	8	Unmodified	_GPTEVLNQ_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS;EYS|p.G2248Wfs*10|1|0.08|ENSG00000188107|chr6:63999167-63999168|-/A|frameshift_variant;EYS|p.F2463Rfs*16|1|0.05|ENSG00000188107|chr6:63806214-63806215|-/AAGACCT|frameshift_variant;EYS|p.T1710P|1|0.18|ENSG00000188107|chr6:64590739-64590739|T/G|missense_variant;EYS|p.E1720D|1|0.41|ENSG00000188107|chr6:64590707-64590707|C/A|missense_variant;EYS|p.E1830Rfs*16|1|0.31|ENSG00000188107|chr6:64590379-64590380|-/T|frameshift_variant;EYS|p.P1875Lfs*4|1|0.23|ENSG00000188107|chr6:64590243-64590243|G/-|frameshift_variant	ENSG00000188107|ENST00000503581|EYS	ENSG00000188107|ENST00000503581|EYS	MULTI-SECPEP	HCT116MG_D190212_S2	2	429.0886535644531	2	429.2218	856.429047	-0.16232	-6.9671E-05	-0.2353	-0.000101	-0.39762	-0.00017067	429.22199220885375	18.971	0.5209	18.601	18.263	18.784	-0.3695					11	9	2	0	0	0	0.31855	1	6582	6582		13.508	13.05	1	4164300			12877	5969	7606	7649	12361	12361					-0.004910674076086252
GPTGAPDY	8	Unmodified	_GPTGAPDY_					0	0	0			REV__ENST00000476077.1_1_22:24179058-24181169:-|nuORF	REV__ENST00000476077.1_1_22:24179058-24181169:-|nuORF	MSMS	HCT116MG_D190212_S2	2	389.1741943359375	2	389.174318	776.334084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.541	1	21.156	20.656	21.656	-0.38503								0	0	0	0.8837	1	7586	7586		9.3474	0	1		+		12878	15913	7607	7650	12362	12362					-0.06303000878813236
GPTGPQGDP	9	Unmodified	_GPTGPQGDP_					0	0	0			REV__C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	REV__C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	413.19049072265625	2	413.1905	824.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.596	1	17.426	16.926	17.926	-0.17047								0	0	0	0.15181	1	5848	5848		50.855	0	1		+		12879	10069	7608	7651	12363	12363					-0.05276213475815439
GPTGSFSGQP	10	Unmodified	_GPTGSFSGQP_					0	0	0			REV__MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant	REV__MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	468.2269592285156	2	467.716882	933.41921	0.13994	6.5453E-05	-0.32088	-0.00015008	-0.18094	-8.4628E-05	467.7167533795537	20.239	0.78383	19.86	19.346	20.13	-0.37949					17	14	2	0	0	0	0.25173	1	6916	6916		21.537	1.1224	1	2900100	+		12880	10836	7609	7652	12364	12364					-0.05016255412999726
GPTPAAAVP	9	Unmodified	_GPTPAAAVP_					0	0	0		ENST00000592491.1_3_19:5789163-5789688:-|nuORF;ENST00000589085.5_1_19:5787014-5789688:-|nuORF;nc|ENSG00000141994|Q96G46-2|DUS3L;ENSG00000141994|ENST00000309061|DUS3L	ENST00000592491.1_3_19:5789163-5789688:-|nuORF	ENST00000592491.1_3_19:5789163-5789688:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.7162170410156	2	390.716153	779.417754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.97	1	32.588	32.088	33.088	-0.38223								0	0	0	0.76669	1	12030	12030		12.532	3.1841	1				12881	3741	7610	7653	12365	12365					0.01922155288889371
GPTPHRPLTP	10	Unmodified	_GPTPHRPLTP_					0	0	0			REV__CASS4|p.P106H|1|0.06|ENSG00000087589|chr20:56437444-56437444|C/A|missense_variant	REV__CASS4|p.P106H|1|0.06|ENSG00000087589|chr20:56437444-56437444|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	358.20263671875	3	358.201452	1071.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.231	1	20.279	19.779	20.779	0.048107								0	0	0	0.93854	1	6985	6985		3.8763	0.88109	1		+		12882	10098	7611	7654	12366	12366					0.049599674286810114
GPTPQATY	8	Unmodified	_GPTPQATY_					0	0	0			REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	417.70318603515625	2	417.703243	833.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.167	1	21.188	20.688	21.688	0.020542								0	0	0	0.68119	1	7363	7363		32.117	11.246	1		+		12883	11244	7612	7655	12367	12367					-0.03142738953386015
GPTQAQCNNAY	11	Unmodified	_GPTQAQCNNAY_					0	0	0		ENSG00000171094|ENST00000389048|ALK;ALK|p.Q908Rfs*3|1|0.19|ENSG00000171094|chr2:29228977-29228977|G/-|frameshift_variant;ALK|p.W915Gfs*24|1|0.42|ENSG00000171094|chr2:29228957-29228957|C/-|frameshift_variant	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MSMS	HCT116MG_D190212_S1	1	583.6666870117188	2	583.748387	1165.48222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.56	1	27.56	27.06	28.06	0								0	0	0	0.94538	1	10006	10006		8.7454	0.15213	1				12884	5174	7613	7656	12368	12368					-0.09390057687278386
GPTRWPWGLVP	11	Unmodified	_GPTRWPWGLVP_					0	0	0			REV__ENST00000461099.1_1_19:3576912-3578370:+|nuORF	REV__ENST00000461099.1_1_19:3576912-3578370:+|nuORF	MSMS	HCT116MG_D190212_S1	1	633.343994140625	2	633.343115	1264.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.238	1	33.238	32.738	33.738	0								0	0	0	0.94416	1	12293	12293		9.3831	4.0862	1		+		12885	15780	7614	7657	12369	12369					0.049928023882102934
GPTSPRPGAP	10	Unmodified	_GPTSPRPGAP_					0	0	0			REV__ENSG00000184451|ENST00000332438|CCR10	REV__ENSG00000184451|ENST00000332438|CCR10	MSMS	HCT116MG_D190212_S3	3	468.7492980957031	2	468.748516	935.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.288	1	28.082	27.582	28.582	-0.20593								0	0	0	0.78574	1	10231	10231		30.637	5.2372	1		+		12886	13799	7615	7658	12370	12370					0.012157300948956618
GPTTLSQAP	9	Unmodified	_GPTTLSQAP_					0	0	0		nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	MSMS	HCT116MG_D190212_S4	4	436.228759765625	2	436.229625	870.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.631	1	25.341	24.841	25.841	-0.29022								0	0	0	0.7676	1	9092	9092		9.3474	1.4373	1				12887	9641	7616	7659	12371	12371					0.004292191094236841
GPTTPSSKEGP	11	Unmodified	_GPTTPSSKEGP_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.2982788085938	2	529.261653	1056.50875	0.49596	0.00026249	0.14396	7.6192E-05	0.63991	0.00033868	529.2615641055775	24.992	0.62348	24.617	24.4	25.024	-0.37521					21	11	3	0	0	0	0.35748	1	9074	9074		8.1555	0	1	78411000			12888	6081	7617	7660	12372	12372					-0.01724045524269968
GPTTPSSKEGP	11	Unmodified	_GPTTPSSKEGP_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	HCT116MG_D190212_S3	3	529.26171875	2	529.261653	1056.50875	0.51115	0.00027053	-0.058931	-3.119E-05	0.45222	0.00023934	529.2615256033839	24.862	1.3017	24.778	23.925	25.226	-0.083694					44	24	4	0	0	0	0.72139	1	8671	8671		13.906	2.4113	1	74748000			12889	6081	7617	7660	12373	12373					-0.01724045524269968
GPVFNKRRVL	10	Unmodified	_GPVFNKRRVL_					0	0	0			REV__THAP2|p.R37C|1|0.13|ENSG00000173451|chr12:71674240-71674240|C/T|missense_variant	REV__THAP2|p.R37C|1|0.13|ENSG00000173451|chr12:71674240-71674240|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	593.612548828125	2	593.364382	1184.71421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.385	1	43.011	42.511	43.511	-0.37433								0	0	0	0.95179	1	15946	15946		4.3292	0.73274	1		+		12890	13439	7618	7661	12374	12374					0.1292419751646321
GPVFNKRRVL	10	Unmodified	_GPVFNKRRVL_					0	0	0			REV__THAP2|p.R37C|1|0.13|ENSG00000173451|chr12:71674240-71674240|C/T|missense_variant	REV__THAP2|p.R37C|1|0.13|ENSG00000173451|chr12:71674240-71674240|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	593.5023803710938	2	593.364382	1184.71421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.446	1	43.072	42.572	43.572	-0.37433								0	0	0	0.95179	1	15970	15970		4.3292	0.73274	1		+		12891	13439	7618	7661	12375	12375					0.1292419751646321
GPVGGEAA	8	Unmodified	_GPVGGEAA_					0	0	0			REV__ENST00000593944.5_2_19:42754557-42754653:-|nuORF	REV__ENST00000593944.5_2_19:42754557-42754653:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	657.3209228515625	1	657.320231	656.312954	0.68938	0.00045314	-0.15261	-0.00010031	0.53677	0.00035283	657.3202210688459	23.552	0.57319	23.512	23.187	23.76	-0.03968					14	10	2	0	0	0	0.76257	1	8325	8325		15.768	0	1	2522200	+		12892	16709	7619	7662	12376	12376					-0.028949661876822574
GPVGGHGPRGP	11	Unmodified	_GPVGGHGPRGP_					0	0	0			REV__nc|ENSG00000132470|P16144-5|ITGB4	REV__nc|ENSG00000132470|P16144-5|ITGB4	MULTI-MSMS	HCT116MG_D190212_S3	3	494.25946044921875	2	494.259582	986.504612	0.18203	8.9968E-05	-0.065866	-3.2555E-05	0.11616	5.7413E-05	494.25968734380103	20.029	0.46889	20.077	19.738	20.207	0.048107					11	8	2	0	0	0	0.71887	1	6922	6922		14.838	0.25658	1	3054800	+		12893	17131	7620	7663	12377	12377					0.0108195456333533
GPVGNGVH	8	Unmodified	_GPVGNGVH_					0	0	0		nc|ENSG00000173559|Q96AH0-2|NABP1;ENSG00000173559|ENST00000425611|NABP1	nc|ENSG00000173559|Q96AH0-2|NABP1	nc|ENSG00000173559|Q96AH0-2|NABP1	MULTI-MSMS	HCT116MG_D190212_S3	3	736.37451171875	1	736.373663	735.366387	0.39869	0.00029358	1.1955	0.00088037	1.5942	0.001174	736.374396740006	19.04	0.31184	19.109	18.927	19.239	0.069159					7	5	2	0	0	0	0.71835	1	6535	6535		20.871	5.103	1	3050600			12894	5293	7621	7664	12378	12378					-0.011881686851552331
GPVGNGVH	8	Unmodified	_GPVGNGVH_					0	0	0		nc|ENSG00000173559|Q96AH0-2|NABP1;ENSG00000173559|ENST00000425611|NABP1	nc|ENSG00000173559|Q96AH0-2|NABP1	nc|ENSG00000173559|Q96AH0-2|NABP1	MULTI-MSMS	HCT116MG_D190212_S4	4	736.3733520507812	1	736.373663	735.366387	0.79448	0.00058503	-0.31938	-0.00023518	0.4751	0.00034985	736.3734665555222	19.219	0.25995	19.032	18.869	19.129	-0.18674					7	4	2	0	0	0	0.76257	1	6517	6517		15.768	0	1	1661200			12895	5293	7621	7664	12379	12379					-0.011881686851552331
GPVGSCGMKSR	11	Unmodified	_GPVGSCGMKSR_					0	0	0			REV__nc|ENSG00000106648|Q7Z4T8-2|GALNTL5	REV__nc|ENSG00000106648|Q7Z4T8-2|GALNTL5	MSMS	HCT116MG_D190212_S4	4	539.7597045898438	2	539.760243	1077.50593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.899	1	48.534	48.034	49.034	-0.365								0	0	0	0.95581	1	18120	18120		3.2813	0	1		+		12896	17102	7622	7665	12380	12380					-0.029719154544181947
GPVLNNNPP	9	Unmodified	_GPVLNNNPP_					0	0	0		ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	MULTI-MSMS	HCT116MG_D190212_S2	2	462.14654541015625	2	461.243067	920.47158	0.15724	7.2524E-05	0.10542	4.8623E-05	0.26265	0.00012115	461.24304693958896	21.015	0.93873	20.632	20.127	21.065	-0.38288					32	17	2	0	0	0	0.63193	1	7502	7502		9.3474	0.75416	1	9338000			12897	2103	7623	7666	12381	12381					0.008163277206108432
GPVLNNNPP	9	Unmodified	_GPVLNNNPP_					0	0	0		ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	MULTI-MSMS	HCT116MG_D190212_S3	3	462.1466369628906	2	461.243067	920.47158	0.30483	0.0001406	0.062629	2.8887E-05	0.36746	0.00016949	461.2430268724822	20.323	1.1976	20.371	19.791	20.988	0.048107					37	22	2	0	0	0	0.54041	1	7114	7114		14.582	2.0501	1	4781200			12898	2103	7623	7666	12382	12382					0.008163277206108432
GPVPGAGPAG	10	Unmodified	_GPVPGAGPAG_					0	0	0		ENST00000532817.5_3_19:55677701-55678007:-|nuORF	ENST00000532817.5_3_19:55677701-55678007:-|nuORF	ENST00000532817.5_3_19:55677701-55678007:-|nuORF	MSMS	HCT116MG_D190212_S3	3	390.20587158203125	2	390.205953	778.397353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.962	1	24.86	24.36	25.36	-0.10222								0	0	0	0.77426	1	8890	8890		32.117	5.7757	1				12899	8639	7624	7667	12383	12383					-0.000710153709064798
GPVPQPPRSHD	11	Unmodified	_GPVPQPPRSHD_					0	0	0			REV__CYP4Z1|p.R487Pfs*28|1|0.04|ENSG00000186160|chr1:47117875-47117876|-/CTGG|frameshift_variant	REV__CYP4Z1|p.R487Pfs*28|1|0.04|ENSG00000186160|chr1:47117875-47117876|-/CTGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	593.80224609375	2	593.801811	1185.58907	0.7439	0.00044173	-0.039746	-2.3601E-05	0.70415	0.00041813	593.8018415045298	25.874	0.4149	25.505	25.291	25.706	-0.36914					12	7	2	0	0	0	0.73177	1	9403	9403		10.074	0	1	10844000	+		12900	10325	7625	7668	12384	12384					0.0036986058939874056
GPVPRPPDP	9	Unmodified	_GPVPRPPDP_					0	0	0		SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant;SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	466.2455139160156	2	466.253434	930.492316	0.20789	9.6931E-05	0.85614	0.00039918	1.064	0.00049611	466.2537921488808	27.67	0.15581	27.67	27.592	27.748	0					4	2	2	0	0	0	0.25445	1	10052	10052		0.52476	0.52476	1	2710200			12901	6212	7626	7669	12385	12385					0.02428918100270039
GPVQHGGY	8	Unmodified	_GPVQHGGY_					0	0	0			REV__FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	REV__FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	814.3846435546875	1	814.384228	813.376952	0.93068	0.00075793	0.20348	0.00016571	1.1342	0.00092364	814.3842759394543	23.76	0.20804	23.377	23.247	23.456	-0.38324					6	3	2	0	0	0	0.64761	1	8500	8500		28.173	3.4993	1	15401000	+		12902	14052	7627	7670	12386	12386					-0.03720186030716377
GPVRGPFPIIV	11	Unmodified	_GPVRGPFPIIV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S3	3	576.3507690429688	2	576.350409	1150.68626	0.54951	0.00031671	0.01302	7.504E-06	0.56253	0.00032421	576.3504156184823	56.093	0.20893	55.806	55.675	55.884	-0.28773					8	3	3	0	0	0	0.71532	1	21313	21313		16.149	6.766	1	4178700		+	12903	549	7628	7671	12387	12387					0.11694874536351563
GPVRGPFPIIV	11	Unmodified	_GPVRGPFPIIV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S4	4	576.3500366210938	2	576.350409	1150.68626	0.54458	0.00031387	-0.1443	-8.3166E-05	0.40028	0.0002307	576.3499410705721	56.084	0.26758	55.778	55.616	55.884	-0.30626					6	4	2	0	0	0	0.70377	1	21036	21036		20.415	11.031	1	1702800		+	12904	549	7628	7671	12388	12388					0.11694874536351563
GPVRRVQAPP	10	Unmodified	_GPVRRVQAPP_					0	0	0			REV__ENST00000467201.5_1_7:100176230-100176407:-|nuORF	REV__ENST00000467201.5_1_7:100176230-100176407:-|nuORF	MSMS	HCT116MG_D190212_S2	2	539.2427368164062	2	538.819807	1075.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.913	1	22.528	22.028	23.028	-0.3852								0	0	0	0.93854	1	8141	8141		7.2892	1.5574	1		+		12905	15834	7629	7672	12389	12389					0.09027362556935259
GPVSGPGSYAP	11	Unmodified	_GPVSGPGSYAP_					0	0	0			REV__nc|ENSG00000077522|P35609-2|ACTN2	REV__nc|ENSG00000077522|P35609-2|ACTN2	MULTI-MSMS	HCT116MG_D190212_S4	4	494.7403259277344	2	494.740357	987.46616	0.27639	0.00013674	-0.72541	-0.00035889	-0.44902	-0.00022215	494.7396031448839	29.647	0.57206	29.297	29.189	29.761	-0.34921					15	10	2	0	0	0	0.70991	1	10845	10845		18.146	1.0335	1	2424600	+		12906	10830	7630	7673	12390	12390					-0.028073958618620054
GPVSPLQPD	9	Unmodified	_GPVSPLQPD_					0	0	0		sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1;sp|P16753|SCAF_HCMVACapsidscaffoldingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL80PE=1SV=1	sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1	sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	909.4672241210938	1	909.467623	908.460347	0.61385	0.00055828	-0.078319	-7.1228E-05	0.53553	0.00048705	909.4671862197109	31.953	0.41529	31.577	31.382	31.797	-0.37529					9	7	2	0	0	0	0.19461	1	11642	11642		41.84	5.7126	1	1787600			12907	18210	7631	7674	12391	12391					0.002455056264693667
GPVSRGAGFN	10	Unmodified	_GPVSRGAGFN_					0	0	0			REV__ENST00000341735.3_1_15:90319632-90321465:+|nuORF	REV__ENST00000341735.3_1_15:90319632-90321465:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	481.2461242675781	2	481.246141	960.477728	0.13312	6.4061E-05	0.13274	6.3881E-05	0.26586	0.00012794	481.24614869551806	18.323	0.62134	18.142	17.786	18.407	-0.18051					20	11	2	0	0	0	0.67188	1	6096	6096		22.736	5.6234	1	1747700	+		12908	14974	7632	7675	12392	12392					-0.0040915404786119325
GPVSRSFDQ	9	Unmodified	_GPVSRSFDQ_					0	0	0			REV__nc|ENSG00000102098|Q9UQR0-2|SCML2	REV__nc|ENSG00000102098|Q9UQR0-2|SCML2	MULTI-MSMS	HCT116MG_D190212_S4	4	496.74334716796875	2	496.743431	991.472308	0.45926	0.00022814	-0.453	-0.00022503	0.0062629	3.111E-06	496.7433184805379	21.478	1.6619	21.26	20.179	21.841	-0.21832					57	31	4	0	0	0	0.41514	1	7617	7617		21.747	2.4897	1	10611000	+		12909	11143	7633	7676	12393	12393					-0.023768776303313643
GPVTVPPSGP	10	Unmodified	_GPVTVPPSGP_					0	0	0			REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2	REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2	MSMS	HCT116MG_D190212_S4	4	454.248291015625	2	454.247818	906.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.278	1	44.905	44.405	45.405	-0.37266								0	0	0	0.91906	1	16697	16697		11.64	2.2929	1		+		12910	12274	7634	7677	12394	12394					0.02410096006144613
GPVVYERVMSP	11	Unmodified	_GPVVYERVMSP_					0	0	0		ENST00000434027.2_1_5:98106187-98106367:+|nuORF	ENST00000434027.2_1_5:98106187-98106367:+|nuORF	ENST00000434027.2_1_5:98106187-98106367:+|nuORF	MSMS	HCT116MG_D190212_S3	3	617.317138671875	2	617.318448	1232.62234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.389	1	38.088	37.588	38.588	-0.30137								0	0	0	0.94924	1	14219	14219		6.7232	0.99131	1				12911	7870	7635	7678	12395	12395					0.01533726317120454
GPVWRKHYITY	11	Unmodified	_GPVWRKHYITY_					0	0	0		MMP12|p.Y390Ifs*7|1|0.4|ENSG00000262406|chr11:102865813-102865813|A/-|frameshift_variant;ENSG00000262406|ENST00000571244|MMP12	MMP12|p.Y390Ifs*7|1|0.4|ENSG00000262406|chr11:102865813-102865813|A/-|frameshift_variant	MMP12|p.Y390Ifs*7|1|0.4|ENSG00000262406|chr11:102865813-102865813|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	710.3834838867188	2	710.380229	1418.7459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.341	1	34.955	34.455	35.455	-0.38606								0	0	0	0.95521	1	12940	12940		3.5965	0.31518	1				12912	6634	7636	7679	12396	12396					0.053281454797570404
GPWGEGKATT	10	Unmodified	_GPWGEGKATT_					0	0	0			REV__ENST00000598805.2_1_19:6686670-6693093:-|nuORF	REV__ENST00000598805.2_1_19:6686670-6693093:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	503.1077575683594	2	502.245806	1002.47706	0.38076	0.00019123	3.0363	0.001525	3.4171	0.0017162	502.2483459194278	19.269	0.15623	19.329	19.229	19.386	0.059828					4	2	2	0	0	0	0.75427	1	6574	6574		15.847	0	1	1058600	+		12913	16736	7637	7680	12397	12397					-0.024079934875658182
GPWRCAPHPQS	11	Unmodified	_GPWRCAPHPQS_					0	0	0			REV__ENST00000381401.10_1_X:1505295-1505394:-|nuORF	REV__ENST00000381401.10_1_X:1505295-1505394:-|nuORF	MSMS	HCT116MG_D190212_S3	3	618.2923583984375	2	618.290556	1234.56656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.847	1	21.848	21.348	22.348	0.00074577								0	0	0	0.94012	1	7634	7634		11.495	2.1116	1		+		12914	15279	7638	7681	12398	12398					-0.04134062079856449
GPYDHEPDFLH	11	Unmodified	_GPYDHEPDFLH_					0	0	0			REV__ENST00000475752.1_1_15:32976717-32988807:+|nuORF	REV__ENST00000475752.1_1_15:32976717-32988807:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	442.863037109375	3	442.863165	1325.56767	0.023772	1.0528E-05	-0.22263	-9.8594E-05	-0.19886	-8.8066E-05	442.8630341006699	15.111	0.20851	14.784	14.654	14.863	-0.32684					6	3	2	0	0	0	0.73364	1	5026	5026		4.7159	0	1	1813800	+		12915	13129	7639	7682	12399	12399					-0.08209569229961744
GPYEEEEGELN	11	Unmodified	_GPYEEEEGELN_					0	0	0		ENST00000493787.5_1_10:75082782-75108210:-|nuORF;nc|ENSG00000156042|Q5T0N1-2|CFAP70;nc|ENSG00000156042|Q5T0N1|CFAP70;ENSG00000156042|ENST00000355577|CFAP70	ENST00000493787.5_1_10:75082782-75108210:-|nuORF	ENST00000493787.5_1_10:75082782-75108210:-|nuORF	MSMS	HCT116MG_D190212_S4	4	633.260498046875	2	633.262047	1264.50954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.009	1	20.8	20.3	21.3	-0.20959								0	0	0	0.94416	1	7227	7227		9.3831	3.1773	1				12916	4272	7640	7683	12400	12400					-0.11213295665857004
GPYGSPGA	8	Unmodified	_GPYGSPGA_					0	0	0		ENSG00000215018|ENST00000399429|COL28A1;COL28A1|p.D436Ifs*2|1|0.26|ENSG00000215018|chr7:7456109-7456109|C/-|frameshift_variant;nc|ENSG00000215018|Q2UY09-2|COL28A1;COL28A1|p.V898Wfs*18|1|0.41|ENSG00000215018|chr7:7373215-7373215|T/-|frameshift_variant;COL28A1|p.N938Mfs*12|1|0.15|ENSG00000215018|chr7:7373093-7373093|T/-|frameshift_variant	ENSG00000215018|ENST00000399429|COL28A1	ENSG00000215018|ENST00000399429|COL28A1	MULTI-MSMS	HCT116MG_D190212_S3	3	704.9982299804688	1	705.320231	704.312954	0.88164	0.00062184	-0.093289	-6.5799E-05	0.78835	0.00055604	705.3199732075436	29.923	1.8842	29.686	28.146	30.03	-0.23655					65	35	3	0	0	0	0.3344	1	10503	10503		56.048	6.3794	1	26561000			12917	6444	7641	7684	12401	12401					-0.0510296618766688
GPYTPAQHAP	10	Unmodified	_GPYTPAQHAP_					0	0	0			REV__BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	REV__BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	519.77734375	2	519.753798	1037.49304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.425	1	23.177	22.677	23.677	-0.24775								0	0	0	0.94107	1	8201	8201		6.7232	0	1		+		12918	10057	7642	7685	12402	12402					-0.024202872506748463
GPYTQQQNGT	10	Unmodified	_GPYTQQQNGT_					0	0	0		ENST00000488223.5_1_10:74886420-74890658:+|nuORF;nc|ENSG00000166321|Q86X67-3|NUDT13;nc|ENSG00000166321|Q86X67-2|NUDT13;ENSG00000166321|ENST00000357321|NUDT13	ENST00000488223.5_1_10:74886420-74890658:+|nuORF	ENST00000488223.5_1_10:74886420-74890658:+|nuORF	MSMS	HCT116MG_D190212_S4	4	547.248779296875	2	547.249077	1092.4836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.688	1	30.324	29.824	30.824	-0.36416								0	0	0	0.91971	1	11107	11107		11.495	1.4208	1				12919	4839	7643	7686	12403	12403					-0.058941003268500936
GQAGYPVY	8	Unmodified	_GQAGYPVY_					0	0	0		nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH;ENST00000313755.9_1_22:18900690-18907344:-|nuORF	nc|ENSG00000100033|O43272-2|PRODH	nc|ENSG00000100033|O43272-2|PRODH	MULTI-MSMS	HCT116MG_D190212_S2	2	854.405517578125	1	854.404295	853.397018	1.0492	0.0008964	0.093201	7.9631E-05	1.1424	0.00097603	854.4044288719703	29.615	0.36151	29.314	29.134	29.495	-0.30095					9	6	2	0	0	0	0.25164	1	10861	10861		63.563	13.894	1	33121000			12920	1658	7644	7687	12404	12404					-0.03554435090757124
GQAGYPVY	8	Unmodified	_GQAGYPVY_					0	0	0		nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH;ENST00000313755.9_1_22:18900690-18907344:-|nuORF	nc|ENSG00000100033|O43272-2|PRODH	nc|ENSG00000100033|O43272-2|PRODH	MULTI-MSMS	HCT116MG_D190212_S3	3	854.4044799804688	1	854.404295	853.397018	0.86739	0.00074111	-0.39641	-0.00033869	0.47099	0.00040241	854.4041025741516	29.711	0.26615	29.474	29.344	29.61	-0.23655					7	4	2	0	0	0	0.60268	1	10831	10831		32.117	3.6301	1	3789900			12921	1658	7644	7687	12405	12405					-0.03554435090757124
GQDGSVVQF	9	Unmodified	_GQDGSVVQF_					0	0	0		ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000177688|ENST00000326669|SUMO4;ENST00000466861.1_1_21:46233737-46238015:-|nuORF	ENSG00000188612|ENST00000420826|SUMO2	ENSG00000188612|ENST00000420826|SUMO2	MULTI-MSMS	HCT116MG_D190212_S1	1	936.4426879882812	1	936.442137	935.43486	0.80076	0.00074987	-0.19498	-0.00018259	0.60578	0.00056728	936.4419997209746	42.926	0.31284	42.926	42.743	43.056	0					9	5	2	0	0	0	0.016744	1	16226	16226		99.755	39.681	1	20897000			12922	5787	7645	7688	12406	12406					-0.03543968895939997
GQDGSVVQF	9	Unmodified	_GQDGSVVQF_					0	0	0		ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000177688|ENST00000326669|SUMO4;ENST00000466861.1_1_21:46233737-46238015:-|nuORF	ENSG00000188612|ENST00000420826|SUMO2	ENSG00000188612|ENST00000420826|SUMO2	MULTI-MSMS	HCT116MG_D190212_S2	2	936.4420776367188	1	936.442137	935.43486	0.54889	0.00051401	0.39524	0.00037012	0.94413	0.00088413	936.442049558498	42.99	0.2561	42.92	42.741	42.997	-0.069984					8	4	2	0	0	0	0.01405	1	16273	16273		103.35	39.117	1	115650000			12923	5787	7645	7688	12407	12407					-0.03543968895939997
GQDGSVVQF	9	Unmodified	_GQDGSVVQF_					0	0	0		ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000177688|ENST00000326669|SUMO4;ENST00000466861.1_1_21:46233737-46238015:-|nuORF	ENSG00000188612|ENST00000420826|SUMO2	ENSG00000188612|ENST00000420826|SUMO2	MULTI-MSMS	HCT116MG_D190212_S3	3	936.443115234375	1	936.442137	935.43486	0.74959	0.00070195	-0.11761	-0.00011014	0.63198	0.00059181	936.4420021987031	43.176	0.32344	42.871	42.762	43.085	-0.30472					17	10	2	0	0	0	0.01405	1	16106	16106		103.35	40.781	1	37612000			12924	5787	7645	7688	12408	12408					-0.03543968895939997
GQETPRPAQ	9	Unmodified	_GQETPRPAQ_					0	0	0		ENST00000539777.5_1_1:168066332-168105620:-|nuORF	ENST00000539777.5_1_1:168066332-168105620:-|nuORF	ENST00000539777.5_1_1:168066332-168105620:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	492.24884033203125	2	492.24888	982.483208	0.17883	8.8031E-05	0.13892	6.8384E-05	0.31775	0.00015641	492.24888423620956	15.251	0.83286	15.334	15.09	15.923	0.083271					37	15	3	0	0	0	0.15273	1	4951	4951		47.749	3.8904	1	12310000			12925	8684	7646	7689	12409	12409					-0.008734752560485504
GQFCFFHWGE	10	Unmodified	_GQFCFFHWGE_					0	0	0			REV__ENST00000571074.5_1_17:7529767-7530880:-|nuORF	REV__ENST00000571074.5_1_17:7529767-7530880:-|nuORF	MSMS	HCT116MG_D190212_S4	4	629.2625732421875	2	629.260933	1256.50731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.408	1	49.046	48.546	49.546	-0.36213								0	0	0	0.92607	1	18325	18325		10.074	0	1		+		12926	12335	7647	7690	12410	12410					-0.11067958094008645
GQGPPSGPGQP	11	Unmodified	_GQGPPSGPGQP_					0	0	0		nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1	nc|ENSG00000137693|P46937-5|YAP1	nc|ENSG00000137693|P46937-5|YAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	489.7356872558594	2	489.735606	977.456658	-0.1154	-5.6514E-05	0.6542	0.00032038	0.5388	0.00026387	489.73600539465656	18.252	0.46534	18.077	17.896	18.361	-0.17501					10	8	2	0	0	0	0.70073	1	6110	6110		21.537	2.28	1	2772200			12927	3494	7648	7691	12411	12411					-0.032971641473750424
GQGQGFDF	8	Unmodified	_GQGQGFDF_					0	0	0			REV__ENST00000369796.5_1_1:110597053-110597125:+|nuORF	REV__ENST00000369796.5_1_1:110597053-110597125:+|nuORF	MSMS	HCT116MG_D190212_S1	1	428.18499755859375	2	428.185217	854.355882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.794	1	41.794	41.294	42.294	0								0	0	0	0.8837	1	15746	15746		2.3027	0	1		+		12928	15148	7649	7692	12412	12412					-0.0771219613023959
GQGRVVAPET	10	Unmodified	_GQGRVVAPET_					0	0	0		ENST00000261483.4_1_5:109025676-109026051:+|nuORF	ENST00000261483.4_1_5:109025676-109026051:+|nuORF	ENST00000261483.4_1_5:109025676-109026051:+|nuORF	MSMS	HCT116MG_D190212_S4	4	507.27178955078125	2	507.272355	1012.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.269	1	35.883	35.383	36.383	-0.38558								0	0	0	0.92917	1	13266	13266		9.3831	0.63772	1				12929	6851	7650	7693	12413	12413					0.024393842950985345
GQHLARHPRV	10	Unmodified	_GQHLARHPRV_					0	0	0		ENSG00000181444|ENST00000302017|ZNF467	ENSG00000181444|ENST00000302017|ZNF467	ENSG00000181444|ENST00000302017|ZNF467	MSMS	HCT116MG_D190212_S2	2	585.83349609375	2	585.83378	1169.65301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.844	1	10.57	10.07	11.07	-0.27365								0	0	0	0.96377	1	3457	3457		1.6526	0	1				12930	5635	7651	7694	12414	12414					0.07496685537012127
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant;PHF3|p.F1399Lfs*30|1|0.31|ENSG00000118482|chr6:63711780-63711780|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3;PHF3|p.E392Vfs*39|1|0.09|ENSG00000118482|chr6:63684870-63684871|-/TGCTGATAAAACTGAGAACACCCTTG|frameshift_variant;PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant;PHF3|p.R971Sfs*6|1|0.27|ENSG00000118482|chr6:63698526-63698527|-/T|frameshift_variant;PHF3|p.N993Tfs*9|1|0.33|ENSG00000118482|chr6:63698597-63698597|A/-|frameshift_variant;PHF3|p.V1137*|1|0.32|ENSG00000118482|chr6:63706063-63706063|A/-|frameshift_variant	PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant	PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	969.5255737304688	1	969.525138	968.517862	0.76131	0.00073811	0.12218	0.00011846	0.88349	0.00085657	969.5248381755182	46.673	0.31134	46.673	46.543	46.855	0					7	5	2	0	0	0	0.01389	1	17740	17740		103.75	35.668	1	15514000			12931	2608	7652	7695	12415	12415					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant;PHF3|p.F1399Lfs*30|1|0.31|ENSG00000118482|chr6:63711780-63711780|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3;PHF3|p.E392Vfs*39|1|0.09|ENSG00000118482|chr6:63684870-63684871|-/TGCTGATAAAACTGAGAACACCCTTG|frameshift_variant;PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant;PHF3|p.R971Sfs*6|1|0.27|ENSG00000118482|chr6:63698526-63698527|-/T|frameshift_variant;PHF3|p.N993Tfs*9|1|0.33|ENSG00000118482|chr6:63698597-63698597|A/-|frameshift_variant;PHF3|p.V1137*|1|0.32|ENSG00000118482|chr6:63706063-63706063|A/-|frameshift_variant	PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant	PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	969.525146484375	1	969.525138	968.517862	1.0996	0.001066	-0.40205	-0.0003898	0.69751	0.00067625	969.5246236697076	46.834	0.35973	46.722	46.471	46.831	-0.11122					10	6	2	0	0	0	0.0067688	1	17847	17847		122.18	49.211	1	50850000			12932	2608	7652	7695	12416	12416					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant;PHF3|p.F1399Lfs*30|1|0.31|ENSG00000118482|chr6:63711780-63711780|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3;PHF3|p.E392Vfs*39|1|0.09|ENSG00000118482|chr6:63684870-63684871|-/TGCTGATAAAACTGAGAACACCCTTG|frameshift_variant;PHF3|p.I876Yfs*26|1|0.08|ENSG00000118482|chr6:63694705-63694705|A/-|frameshift_variant;PHF3|p.R971Sfs*6|1|0.27|ENSG00000118482|chr6:63698526-63698527|-/T|frameshift_variant;PHF3|p.N993Tfs*9|1|0.33|ENSG00000118482|chr6:63698597-63698597|A/-|frameshift_variant;PHF3|p.V1137*|1|0.32|ENSG00000118482|chr6:63706063-63706063|A/-|frameshift_variant	PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant	PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	485.7455749511719	2	485.266207	968.517862	0.64042	0.00031077	-0.18227	-8.8449E-05	0.45815	0.00022233	485.2660392962459	46.851	0.25697	46.74	46.574	46.831	-0.11121					7	4	2	0	0	0	0.099453	1	17870	17870		49.554	15.153	1	16195000			12933	2608	7652	7695	12417	12417					0.032343478320512986
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	HCT116MG_D190212_S1	1	929.5313110351562	1	929.530224	928.522947	1.0116	0.0009403	-0.3484	-0.00032385	0.66319	0.00061646	929.5298624621113	46.52	0.25787	46.52	46.389	46.647	0					10	4	3	0	0	0	0.027442	1	17661	17661		88.954	10.226	1	48739000			12934	1638	7653	7696	12418	12418					0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	HCT116MG_D190212_S2	2	929.53125	1	929.530224	928.522947	1.3511	0.0012559	-0.40243	-0.00037407	0.94871	0.00088186	929.5297263007501	46.674	0.4114	46.563	46.369	46.78	-0.11121					17	7	3	0	0	0	0.027442	1	17780	17780		88.954	10.226	1	111720000			12935	1638	7653	7696	12419	12419					0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	HCT116MG_D190212_S2	2	465.26904296875	2	465.26875	928.522947	0.61065	0.00028412	-0.015589	-7.2529E-06	0.59506	0.00027686	465.2689479526782	46.711	0.30891	46.6	46.42	46.729	-0.11121					7	5	2	0	0	0	0.057285	1	17817	17817		71.134	9.7761	1	16118000			12936	1638	7653	7696	12420	12420					0.05582651694669494
GQLSDLVVV	9	Unmodified	_GQLSDLVVV_					0	0	0		ENST00000511288.1_1_17:48545715-48548505:+|nuORF;ENST00000506085.5_1_17:48545715-48551043:+|nuORF	ENST00000511288.1_1_17:48545715-48548505:+|nuORF	ENST00000511288.1_1_17:48545715-48548505:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	930.784423828125	1	929.530224	928.522947	1.0116	0.0009403	-0.3484	-0.00032385	0.66319	0.00061646	929.5298624621113	46.52	0.25787	46.52	46.389	46.647	0					10	4	3	0	0	0	0.061422	1	17625	17625		69.105	0	1	48739000			12937	8459	7654	7697	12421	12421					0.05582651694658125
GQLTVLRRAH	10	Unmodified	_GQLTVLRRAH_					0	0	0			REV__ENST00000543873.6_1_12:57503871-57504054:-|nuORF	REV__ENST00000543873.6_1_12:57503871-57504054:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	575.843505859375	2	575.843813	1149.67307	0.2369	0.00013642	-0.53542	-0.00030832	-0.29852	-0.0001719	575.8433589863788	50.309	0.98069	50.309	50.059	51.04	0					37	18	3	0	0	0	0.88401	1	19125	19125		2.4985	0.65425	1	200500000	+		12938	16385	7655	7698	12422	12422					0.10422436476960684
GQNSALVI	8	Unmodified	_GQNSALVI_					0	0	0		ZNF816|p.R352Q|1|0.38|ENSG00000180257|chr19:52950720-52950720|C/T|missense_variant;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600	ZNF816|p.R352Q|1|0.38|ENSG00000180257|chr19:52950720-52950720|C/T|missense_variant	ZNF816|p.R352Q|1|0.38|ENSG00000180257|chr19:52950720-52950720|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	401.22686767578125	2	401.226885	800.439217	0.081069	3.2527E-05	-0.27433	-0.00011007	-0.19326	-7.754E-05	401.226674442525	41.695	0.31017	41.627	41.498	41.808	-0.068199					10	5	2	0	0	0	0.64404	1	15775	15775		28.487	0	1	25060000			12939	6027	7656	7699	12423	12423					0.031015403175956635
GQPAGHRV	8	Unmodified	_GQPAGHRV_					0	0	0			REV__ENST00000563592.5_1_15:73076030-73076351:+|nuORF	REV__ENST00000563592.5_1_15:73076030-73076351:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	411.22265625	2	411.222469	820.430384	-0.066128	-2.7194E-05	0.66271	0.00027252	0.59658	0.00024533	411.2226857760251	47.375	0.42976	47.375	47.114	47.543	0					10	8	2	0	0	0	0.8672	1	18018	18018		2.3027	0	1	16382000	+		12940	16513	7657	7700	12424	12424					0.012986114718160024
GQPGVPGVP	9	Unmodified	_GQPGVPGVP_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;COL4A2|p.P805Lfs*15|1|0.22|ENSG00000134871|chr13:110473134-110473134|C/-|frameshift_variant;COL4A2|p.P1057Lfs*10|1|0.18|ENSG00000134871|chr13:110485794-110485794|C/-|frameshift_variant	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	HCT116MG_D190212_S3	3	807.4368896484375	1	807.435929	806.428653	1.1177	0.00090245	-0.49036	-0.00039594	0.62731	0.00050651	807.4354952602857	32.754	0.3125	32.469	32.3	32.612	-0.2851					9	5	2	0	0	0	0.043314	1	12033	12033		77.984	7.2688	1	5916700			12941	3311	7658	7701	12425	12425					0.01769557663192245
GQPGVPGVP	9	Unmodified	_GQPGVPGVP_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;COL4A2|p.P805Lfs*15|1|0.22|ENSG00000134871|chr13:110473134-110473134|C/-|frameshift_variant;COL4A2|p.P1057Lfs*10|1|0.18|ENSG00000134871|chr13:110485794-110485794|C/-|frameshift_variant	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	HCT116MG_D190212_S4	4	807.4368896484375	1	807.435929	806.428653	0.9922	0.00080114	0.0022801	1.841E-06	0.99448	0.00080298	807.4360417073044	32.873	0.25946	32.494	32.312	32.572	-0.37924					6	4	2	0	0	0	0.043314	1	11998	11998		77.984	7.1198	1	4500700			12942	3311	7658	7701	12426	12426					0.01769557663192245
GQPGVPGVPG	10	Unmodified	_GQPGVPGVPG_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;COL4A2|p.P805Lfs*15|1|0.22|ENSG00000134871|chr13:110473134-110473134|C/-|frameshift_variant;COL4A2|p.P1057Lfs*10|1|0.18|ENSG00000134871|chr13:110485794-110485794|C/-|frameshift_variant	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	HCT116MG_D190212_S3	3	864.4577026367188	1	864.457393	863.450116	0.82641	0.0007144	-0.42551	-0.00036783	0.40091	0.00034657	864.4569089762006	30.176	0.35617	29.927	29.755	30.112	-0.24946					12	6	3	0	0	0	0.019944	1	10998	10998		120.45	31.547	1	8873200			12943	3311	7659	7702	12427	12427					0.012929426919072284
GQPGVPGVPG	10	Unmodified	_GQPGVPGVPG_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;COL4A2|p.P805Lfs*15|1|0.22|ENSG00000134871|chr13:110473134-110473134|C/-|frameshift_variant;COL4A2|p.P1057Lfs*10|1|0.18|ENSG00000134871|chr13:110485794-110485794|C/-|frameshift_variant	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	HCT116MG_D190212_S4	4	864.4578247070312	1	864.457393	863.450116	0.70676	0.00061097	-0.26822	-0.00023186	0.43854	0.0003791	864.45717794486	30.292	0.2501	29.935	29.753	30.003	-0.3571					7	4	2	0	0	0	0.026842	1	10977	10977		108	7.6255	1	7458500			12944	3311	7659	7702	12428	12428					0.012929426919072284
GQRWHLHPYP	10	Unmodified	_GQRWHLHPYP_					0	0	0		ENST00000339861.8_3_9:92017874-92020319:-|nuORF	ENST00000339861.8_3_9:92017874-92020319:-|nuORF	ENST00000339861.8_3_9:92017874-92020319:-|nuORF	MSMS	HCT116MG_D190212_S4	4	430.8880615234375	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.615	1	62.366	61.866	62.866	-0.24919								0	0	0	0.97054	1	23644	23644		0.13989	0	1				12945	7210	7660	7703	12429	12429					0.00853863442898728
GQSIQEPKEA	10	Unmodified	_GQSIQEPKEA_					0	0	0		ENSG00000101812|ENST00000675318|H2BW2;nc|ENSG00000101812|P0C1H6|H2BW2	ENSG00000101812|ENST00000675318|H2BW2	ENSG00000101812|ENST00000675318|H2BW2	MULTI-MSMS	HCT116MG_D190212_S2	2	543.775146484375	2	543.774928	1085.5353	0.50722	0.00027581	-0.049078	-2.6688E-05	0.45814	0.00024912	543.7748940853089	17.367	0.26147	17.018	16.873	17.135	-0.34933					8	4	3	0	0	0	0.35357	1	5924	5924		45.7	0	1	16653000			12946	1807	7661	7704	12430	12430					-0.004043566329528403
GQSIQEPKEA	10	Unmodified	_GQSIQEPKEA_					0	0	0		ENSG00000101812|ENST00000675318|H2BW2;nc|ENSG00000101812|P0C1H6|H2BW2	ENSG00000101812|ENST00000675318|H2BW2	ENSG00000101812|ENST00000675318|H2BW2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	543.774928	1085.5353	0.33016	0.00017953	0.40819	0.00022197	0.73836	0.0004015	543.7752542260421	16.75	0.20816	16.834	16.704	16.912	0.084467	-0.091786	0.00028582	NaN	45.7	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2586700			12947	1807	7661	7704							-0.004043566329528403
GQSLHLLRLY	10	Unmodified	_GQSLHLLRLY_					0	0	0			REV__ENST00000439199.1_1_7:23530116-23530830:+|nuORF	REV__ENST00000439199.1_1_7:23530116-23530830:+|nuORF	MSMS	HCT116MG_D190212_S2	2	600.5606079101562	2	600.348397	1198.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.101	1	52.912	52.412	53.412	-0.18922								0	0	0	0.95351	1	20413	20413		3.9444	0.3479	1		+		12948	15638	7662	7705	12431	12431					0.0908478504265986
GQVGGQVSV	9	Unmodified	_GQVGGQVSV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S1	1	830.4375610351562	1	830.436658	829.429381	0.89246	0.00074113	0.14897	0.00012371	1.0414	0.00086484	830.4366651005749	29.607	0.31231	29.607	29.425	29.737	0					9	5	2	0	0	0	0.010834	1	10829	10829		111.29	33.303	1	15882000		+	12949	559	7663	7706	12432	12432					0.007843523122346596
GQVGGQVSV	9	Unmodified	_GQVGGQVSV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF	CON__P08727	CON__P08727	MSMS	HCT116MG_D190212_S1	1	415.72235107421875	2	415.721967	829.429381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.697	1	29.697	29.197	30.197	0								0	0	0	0.76739	1	10864	10864		10.074	0.72649	1			+	12950	559	7663	7706	12433	12433					0.007843523122346596
GQVGGQVSV	9	Unmodified	_GQVGGQVSV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S2	2	830.4375610351562	1	830.436658	829.429381	0.6857	0.00056943	0.44805	0.00037208	1.1338	0.00094151	830.4367663838048	29.925	0.30993	29.624	29.495	29.805	-0.30095					10	5	3	0	0	0	0.0062667	1	10990	10990		126.57	54.644	1	47597000		+	12951	559	7663	7706	12434	12434					0.007843523122346596
GRAGAGFP	8	Unmodified	_GRAGAGFP_					0	0	0		ENST00000396105.5_2_20:47892402-47894580:-|nuORF	ENST00000396105.5_2_20:47892402-47894580:-|nuORF	ENST00000396105.5_2_20:47892402-47894580:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	366.6923828125	2	366.693013	731.371472	-0.16324	-5.986E-05	-1.4141	-0.00051854	-1.5773	-0.0005784	366.69240125345544	23.405	0.20882	23.405	23.314	23.523	0					6	3	2	0	0	0	0.87576	1	8363	8363		0.79363	0	1	3060000			12952	7651	7664	7707	12435	12435					-0.0049586482252834685
GRAGAGFP	8	Unmodified	_GRAGAGFP_					0	0	0		ENST00000396105.5_2_20:47892402-47894580:-|nuORF	ENST00000396105.5_2_20:47892402-47894580:-|nuORF	ENST00000396105.5_2_20:47892402-47894580:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	366.693013	731.371472	-0.087091	-3.1936E-05	-1.8834	-0.00069064	-1.9705	-0.00072258	366.6921318280604	23.357	0.31269	23.317	23.187	23.5	-0.03968	-0.043927	-9.0216E-05	NaN	0.79363	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3568700			12953	7651	7664	7707							-0.0049586482252834685
GRAKLIRVLL	10	Unmodified	_GRAKLIRVLL_					0	0	0			REV__CUL9|p.H1883R|1|0.1|ENSG00000112659|chr6:43213872-43213872|A/G|missense_variant	REV__CUL9|p.H1883R|1|0.1|ENSG00000112659|chr6:43213872-43213872|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	380.264892578125	3	380.264276	1137.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.203	1	54.885	54.385	55.385	-0.31774								0	0	0	0.97045	1	20663	20663		0.15932	0	1		+		12954	10312	7665	7708	12436	12436					0.20762245073001395
GRDPGPAGPA	10	Unmodified	_GRDPGPAGPA_					0	0	0			REV__GLIS1|p.H410Ifs*53|1|0.33|ENSG00000174332|chr1:53514755-53514755|G/-|frameshift_variant	REV__GLIS1|p.H410Ifs*53|1|0.33|ENSG00000174332|chr1:53514755-53514755|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	447.7248229980469	2	447.725041	893.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.305	1	15.143	14.643	15.643	-0.16173								0	0	0	0.91638	1	4923	4923		12.241	2.1667	1		+		12955	13478	7666	7709	12437	12437					-0.015451294562353723
GREKKRCKL	9	Unmodified	_GREKKRCKL_					0	0	0		ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.Q1385Sfs*6|1|0.26|ENSG00000085224|chrX:77656621-77656622|-/A|frameshift_variant;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	373.5571594238281	3	373.225603	1116.65498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.488	1	31.488	30.988	31.988	0								0	0	0	0.76739	1	11587	11587		6.6304	0	1				12956	231	7667	7710	12438	12438					0.10131978230629102
GRFGKKGL	8	Unmodified	_GRFGKKGL_					0	0	0		nc|ENSG00000109832|Q9UHL0-2|DDX25;ENSG00000109832|ENST00000263576|DDX25	nc|ENSG00000109832|Q9UHL0-2|DDX25	nc|ENSG00000109832|Q9UHL0-2|DDX25	MULTI-MSMS	HCT116MG_D190212_S3	3	862.525634765625	1	862.525747	861.518471	0.99812	0.0008609	-0.41092	-0.00035443	0.58719	0.00050647	862.5250030403934	60.339	3.2084	60.087	58.06	61.268	-0.25233					110	61	2	0	0	0	0.87635	1	22681	22681		0.69038	0	1	14102000			12957	2222	7668	7711	12439	12439					0.08217232062418134
GRGAGPRR	8	Unmodified	_GRGAGPRR_					0	0	0		ENST00000332674.9_2_10:111967418-111987950:+|nuORF	REV__ENST00000509638.5_1_4:41362723-41362834:+|nuORF	REV__ENST00000509638.5_1_4:41362723-41362834:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	413.7414245605469	2	413.74136	825.468167	-0.13009	-5.3822E-05	-0.078966	-3.2671E-05	-0.20905	-8.6493E-05	413.7413046180814	60.968	1.7592	60.968	60.749	62.508	0					46	33	2	0	0	0	0.87635	1	24000	24000		0.69038	0	1	6289800			12958	7168	7669	7712	12440	12440					0.04845122457265916
GRGGDGPS	8	Unmodified	_GRGGDGPS_					0	0	0		ENST00000479016.2_1_12:56618209-56618281:+|nuORF	ENST00000479016.2_1_12:56618209-56618281:+|nuORF	ENST00000479016.2_1_12:56618209-56618281:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	702.3169555664062	1	702.316542	701.309266	0.82617	0.00058024	0.59581	0.00041845	1.422	0.00099869	702.3167142925915	34.727	1.087	34.727	34.076	35.163	0					52	20	3	0	0	0	0.86858	1	12748	12748		2.0598	0	1	411060000			12959	8225	7670	7713	12441	12441					-0.053336359615173023
GRGGDGPS	8	Unmodified	_GRGGDGPS_					0	0	0		ENST00000479016.2_1_12:56618209-56618281:+|nuORF	ENST00000479016.2_1_12:56618209-56618281:+|nuORF	ENST00000479016.2_1_12:56618209-56618281:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	702.316542	701.309266	0.88152	0.00061911	0.37987	0.00026679	1.2614	0.0008859	702.3166450906275	34.997	0.31079	34.839	34.761	35.072	-0.15834	0.056201	-8.9219E-05	NaN	2.0598	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111810000			12960	8225	7670	7713							-0.053336359615173023
GRGHTWGA	8	Unmodified	_GRGHTWGA_					0	0	0			REV__ENST00000490672.1_1_1:155145120-155145778:-|nuORF	REV__ENST00000490672.1_1_1:155145120-155145778:-|nuORF	MSMS	HCT116MG_D190212_S4	4	421.20660400390625	2	421.206818	840.399084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.346	1	40.969	40.469	41.469	-0.37732								0	0	0	0.8837	1	15199	15199		2.5775	0	1		+		12961	15962	7671	7714	12442	12442					-0.02749961562290082
GRGKGACAR	9	Unmodified	_GRGKGACAR_					0	0	0		ENST00000452236.2_1_6:28554764-28555010:-|nuORF	ENST00000452236.2_1_6:28554764-28555010:-|nuORF	ENST00000452236.2_1_6:28554764-28555010:-|nuORF	MSMS	HCT116MG_D190212_S4	4	438.23333740234375	2	438.235053	874.455553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.262	1	57.973	57.473	58.473	-0.28879								0	0	0	0.76973	1	21892	21892		1.8442	1.0506	1				12962	7993	7672	7715	12443	12443					0.013303430027235663
GRGPRKGP	8	Unmodified	_GRGPRKGP_					0	0	0		MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	412.74609375	2	412.746111	823.477669	-0.027783	-1.1467E-05	0.33694	0.00013907	0.30915	0.0001276	412.74617555626685	48.93	1.0465	48.565	48.313	49.359	-0.365					31	25	2	0	0	0	0.86564	1	18381	18381		2.5775	0	1	8509500			12963	9354	7673	7716	12444	12444					0.05886890742806372
GRGPRKGP	8	Unmodified	_GRGPRKGP_					0	0	0		MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	412.746111	823.477669	0.24384	0.00010064	0.29315	0.000121	0.53699	0.00022164	412.7462183590148	48.894	0.99173	48.578	48.14	49.132	-0.31596	0.0069401	-1.8519E-05	NaN	2.5775	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4961700			12964	9354	7673	7716							0.05886890742806372
GRGPRKGP	8	Unmodified	_GRGPRKGP_					0	0	0		MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	412.746111	823.477669	-0.027783	-1.1467E-05	0.33694	0.00013907	0.30915	0.0001276	412.74617555626685	48.93	1.0465	48.565	48.313	49.359	-0.365	-0.0069401	1.7627E-05	NaN	2.5775	31	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8509500			12965	9354	7673	7716							0.05886890742806372
GRGQTGGN	8	Unmodified	_GRGQTGGN_					0	0	0			REV__nc|ENSG00000102100|P78381-3|SLC35A2	REV__nc|ENSG00000102100|P78381-3|SLC35A2	MULTI-MSMS	HCT116MG_D190212_S1	1	747.3565673828125	1	746.353991	745.346714	0.87377	0.00065214	0.43245	0.00032276	1.3062	0.0009749	746.3542639097801	31.622	0.72969	31.622	31.336	32.066	0					23	13	3	0	0	0	0.87685	1	11731	11731		0.6015	0	1	55109000	+		12966	17096	7674	7717	12445	12445					-0.036145446958926186
GRGRRRRQWGL	11	Unmodified	_GRGRRRRQWGL_					0	0	0			REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	REV__ENST00000369756.3_2_6:82461889-82462327:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	466.9425354003906	3	466.608098	1396.80247	0.021307	9.9421E-06	0.051331	2.3951E-05	0.072638	3.3893E-05	466.6080713991117	54.358	1.4066	54.034	53.411	54.818	-0.32349					62	26	3	0	0	0	0.74191	1	20423	20423		0.094841	0.094841	1	14677000	+		12967	15147	7675	7718	12446	12446					0.11993630879624106
GRIVRPPPP	9	Unmodified	_GRIVRPPPP_					0	0	0		ENST00000337537.7_1_14:64009712-64009985:-|nuORF	ENST00000337537.7_1_14:64009712-64009985:-|nuORF	ENST00000337537.7_1_14:64009712-64009985:-|nuORF	MSMS	HCT116MG_D190212_S4	4	494.8062744140625	2	494.806168	987.597784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.891	1	22.653	22.153	23.153	-0.23758								0	0	0	0.76669	1	7987	7987		12.532	3.1841	1				12968	7197	7676	7719	12447	12447					0.10348879016555657
GRKGDPGPSGP	11	Unmodified	_GRKGDPGPSGP_					0	0	0		COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant;COL7A1|p.P2298Lfs*90|1|0.18|ENSG00000114270|chr3:48572678-48572678|G/-|frameshift_variant;COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant;nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1;COL7A1|p.G2177Wfs*113|1|0.1|ENSG00000114270|chr3:48573864-48573865|-/G|frameshift_variant;COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant;COL7A1|p.P1754Qfs*87|1|0.6|ENSG00000114270|chr3:48579490-48579490|G/-|frameshift_variant;COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant;COL7A1|p.P2029Lfs*177|2|0.43|ENSG00000114270|chr3:48575438-48575438|G/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7617797851562	2	512.762155	1023.50976	0.27308	0.00014003	-2.161	-0.0011081	-1.8879	-0.00096804	512.7609978274438	17.093	0.46845	16.743	16.457	16.925	-0.34933					10	8	2	0	0	0	0.57532	1	5856	5856		38.176	6.9072	1	3584700			12969	530	7677	7720	12448	12448					-0.0010578636471336722
GRKGPPGPAGP	11	Unmodified	_GRKGPPGPAGP_					0	0	0			REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MSMS	HCT116MG_D190212_S1	1	495.7768859863281	2	495.777608	989.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.835	1	30.835	30.335	31.335	0								0	0	0	0.93374	1	11324	11324		14.838	0	1		+		12970	10865	7678	7721	12449	12449					0.04547411740179541
GRKRGRLPVS	10	Unmodified	_GRKRGRLPVS_					0	0	0		ENST00000394198.6_1_3:97686370-97686451:-|nuORF	ENST00000394198.6_1_3:97686370-97686451:-|nuORF	ENST00000394198.6_1_3:97686370-97686451:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	563.3515014648438	2	563.351806	1124.68906	0.32936	0.00018555	-1.2025	-0.00067743	-0.87313	-0.00049188	563.350827913881	51.811	0.4203	51.811	51.601	52.021	0					11	7	2	0	0	0	0.87945	1	19829	19829		3.5965	3.5965	1	9127300			12971	7631	7679	7722	12450	12450					0.13170142713875066
GRKRKVTV	8	Unmodified	_GRKRKVTV_					0	0	0			REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	MSMS	HCT116MG_D190212_S2	2	472.78704833984375	2	472.311618	942.608683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.446	1	57.271	56.771	57.771	-0.17494								0	0	0	0.8837	1	22181	22181		2.5775	0	1		+		12972	10919	7680	7723	12451	12451					0.13508281390841148
GRLAELRQRL	10	Unmodified	_GRLAELRQRL_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	MSMS	HCT116MG_D190212_S1	1	606.3270263671875	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.365	1	55.365	54.865	55.865	0								0	0	0	0.95089	1	21259	21259		4.5289	0.58447	1				12973	9447	7681	7724	12452	12452					0.12890394539795125
GRLDLRRAP	9	Unmodified	_GRLDLRRAP_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MSMS	HCT116MG_D190212_S4	4	527.3192749023438	2	527.317432	1052.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.571	1	31.201	30.701	31.701	-0.37026								0	0	0	0.67173	1	11464	11464		20.454	0	1		+		12974	13131	7682	7725	12453	12453					0.09610478414197132
GRPGPLGAP	9	Unmodified	_GRPGPLGAP_					0	0	0			REV__ENSG00000123500|ENST00000651968|COL10A1	REV__ENSG00000123500|ENST00000651968|COL10A1	MULTI-MSMS	HCT116MG_D190212_S1	1	411.23480224609375	2	411.235045	820.455536	-0.11124	-4.5746E-05	-0.1896	-7.7969E-05	-0.30084	-0.00012371	411.23481765042834	25.047	0.41917	25.047	24.778	25.197	0					10	7	2	0	0	0	0.088989	1	9009	9009		60.39	6.814	1	5205900	+		12975	11767	7683	7726	12454	12454					0.03812666274370713
GRPGPLGAPG	10	Unmodified	_GRPGPLGAPG_					0	0	0			REV__ENSG00000123500|ENST00000651968|COL10A1	REV__ENSG00000123500|ENST00000651968|COL10A1	MSMS	HCT116MG_D190212_S3	3	439.74542236328125	2	439.745776	877.477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.168	1	24.106	23.606	24.606	-0.061449								0	0	0	0.4096	1	8569	8569		52.268	2.3353	1		+		12976	11767	7684	7727	12455	12455					0.033360513030856964
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S2	2	411.2348937988281	2	411.235045	820.455536	-0.20482	-8.4228E-05	0.17676	7.2692E-05	-0.028053	-1.1536E-05	411.235029064913	25.527	0.41647	25.158	24.978	25.394	-0.36914					14	7	3	0	0	0	0.011506	1	9190	9190		109.63	0	1	31967000	+		12977	13018	7685	7728	12456	12456					0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	411.2347412109375	2	411.235045	820.455536	0.13632	5.606E-05	0.022733	9.3484E-06	0.15905	6.5408E-05	411.2349191247699	25.111	0.57295	25.005	24.787	25.36	-0.10618					23	10	3	0	0	0	0.011506	1	8924	8924		109.63	0	1	38782000	+		12978	13018	7685	7728	12457	12457					0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	821.4624633789062	1	821.462813	820.455536	1.0308	0.00084679	-0.61387	-0.00050427	0.41696	0.00034252	821.4621206354243	25.085	0.31305	24.979	24.839	25.152	-0.10618					8	5	2	0	0	0	0.035402	1	8970	8970		81.864	0	1	3218800	+		12979	13018	7685	7728	12458	12458					0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	411.23516845703125	2	411.235045	820.455536	0.29338	0.00012065	-0.13224	-5.4382E-05	0.16114	6.6265E-05	411.234883664816	25.366	0.46806	25.086	24.85	25.318	-0.27958					21	8	3	0	0	0	0.011506	1	8953	8953		109.63	0	1	34142000	+		12980	13018	7685	7728	12459	12459					0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	821.46337890625	1	821.462813	820.455536	1.0005	0.00082188	0.17187	0.00014118	1.1724	0.00096306	821.4627459301574	25.312	0.31208	25.032	24.902	25.214	-0.27958					9	5	2	0	0	0	0.0059651	2	8992	8977;8992		129.2	0	1	3529100	+		12981	13018	7685	7728	12460;12461	12461					0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	411.235045	820.455536	-0.11124	-4.5746E-05	-0.1896	-7.7969E-05	-0.30084	-0.00012371	411.23481765042834	25.047	0.41917	25.047	24.778	25.197	0	-0.026889	-0.00015754	NaN	109.63	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5205900	+		12982	13018	7685	7728							0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	411.235045	820.455536	-0.20482	-8.4228E-05	0.17676	7.2692E-05	-0.028053	-1.1536E-05	411.235029064913	25.527	0.41647	25.158	24.978	25.394	-0.36914	0.083636	0.00014378	NaN	109.63	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31967000	+		12983	13018	7685	7728							0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	821.462813	820.455536	1.0308	0.00084679	-0.61387	-0.00050427	0.41696	0.00034252	821.4621206354243	25.085	0.31305	24.979	24.839	25.152	-0.10618	-0.026665	-0.00042747	NaN	129.2	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3218800	+		12984	13018	7685	7728							0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	411.235045	820.455536	0.13632	5.606E-05	0.022733	9.3484E-06	0.15905	6.5408E-05	411.2349191247699	25.111	0.57295	25.005	24.787	25.36	-0.10618	-0.069041	1.7093E-05	NaN	109.63	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38782000	+		12985	13018	7685	7728							0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	821.462813	820.455536	1.0005	0.00082188	0.17187	0.00014118	1.1724	0.00096306	821.4627459301574	25.312	0.31208	25.032	24.902	25.214	-0.27958	0.026665	0.00021799	NaN	129.2	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3529100	+		12986	13018	7685	7728							0.03812666274370713
GRPGPLGPA	9	Unmodified	_GRPGPLGPA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	411.235045	820.455536	0.29338	0.00012065	-0.13224	-5.4382E-05	0.16114	6.6265E-05	411.234883664816	25.366	0.46806	25.086	24.85	25.318	-0.27958	0.012293	-0.00011037	NaN	109.63	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34142000	+		12987	13018	7685	7728							0.03812666274370713
GRPGPLGPAGA	11	Unmodified	_GRPGPLGPAGA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	475.2647705078125	2	475.264333	948.514114	0.33486	0.00015915	0.42976	0.00020425	0.76462	0.0003634	475.26465226501887	25.961	0.41731	25.833	25.598	26.016	-0.12795					10	7	2	0	0	0	0.41343	1	9305	9305		53.833	0	1	3745900	+		12988	13018	7686	7729	12462	12462					0.03779722848844358
GRPGPLGPAGA	11	Unmodified	_GRPGPLGPAGA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MSMS	HCT116MG_D190212_S4	4	475.2651672363281	2	475.264333	948.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.223	1	25.927	25.427	26.427	-0.29563								0	0	0	0.35655	1	9331	9331		53.833	0	1		+		12989	13018	7686	7729	12463	12463					0.03779722848844358
GRPPSVGPA	9	Unmodified	_GRPPSVGPA_					0	0	0			REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	419.2326354980469	2	419.232502	836.450451	0.013579	5.6926E-06	0.13377	5.6083E-05	0.14735	6.1775E-05	419.23244682053996	23.057	0.50877	23.017	22.73	23.239	-0.03968					20	9	3	0	0	0	0.24895	1	8085	8085		36.127	0	1	31856000	+		12990	14858	7687	7730	12464	12464					0.025683624117505133
GRPPSVGPA	9	Unmodified	_GRPPSVGPA_					0	0	0			REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	837.4581909179688	1	837.457727	836.450451	0.67235	0.00056307	0.036005	3.0153E-05	0.70836	0.00059322	837.4576820596283	23.044	0.31227	23.005	22.823	23.135	-0.03968					8	5	2	0	0	0	0.21251	1	8148	8148		39.957	5.8549	1	3515900	+		12991	14858	7687	7730	12465	12465					0.025683624117505133
GRPPSVGPA	9	Unmodified	_GRPPSVGPA_					0	0	0			REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	418.8763122558594	2	419.232502	836.450451	0.013579	5.6926E-06	0.13377	5.6083E-05	0.14735	6.1775E-05	419.23244682053996	23.057	0.50877	23.017	22.73	23.239	-0.03968					20	9	3	0	0	0	0.14889	1	8123	8123		41.84	1.8823	1	31856000	+		12992	14858	7687	7730	12466	12466					0.025683624117505133
GRPPSVGPA	9	Unmodified	_GRPPSVGPA_					0	0	0			REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	837.4590454101562	1	837.457727	836.450451	0.57829	0.00048429	-0.03977	-3.3306E-05	0.53852	0.00045099	837.4576672918523	23.376	0.41908	23.128	22.853	23.272	-0.24775					11	7	2	0	0	0	0.069315	1	8179	8179		65.235	19.214	1	4274200	+		12993	14858	7687	7730	12467	12467					0.025683624117505133
GRPPSVGPA	9	Unmodified	_GRPPSVGPA_					0	0	0			REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	418.8764343261719	2	419.232502	836.450451	0.0074755	3.134E-06	0.13733	5.7572E-05	0.1448	6.0706E-05	419.2324579383063	23.337	0.62712	23.09	22.853	23.48	-0.24775					25	11	3	0	0	0	0.24895	1	8203	8203		36.127	0	1	26199000	+		12994	14858	7687	7730	12468	12468					0.025683624117505133
GRPPSVGPA	9	Unmodified	_GRPPSVGPA_					0	0	0			REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	837.457727	836.450451	0.79276	0.0006639	-0.055307	-4.6317E-05	0.73745	0.00061758	837.4573616332877	23.675	0.26002	23.292	23.143	23.403	-0.38324	0.1502	-3.2525E-05	NaN	65.235	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6444200	+		12995	14858	7687	7730							0.025683624117505133
GRPPSVGPA	9	Unmodified	_GRPPSVGPA_					0	0	0			REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	837.457727	836.450451	0.67235	0.00056307	0.036005	3.0153E-05	0.70836	0.00059322	837.4576820596283	23.044	0.31227	23.005	22.823	23.135	-0.03968	-0.13686	4.3945E-05	NaN	65.235	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3515900	+		12996	14858	7687	7730							0.025683624117505133
GRPPSVGPA	9	Unmodified	_GRPPSVGPA_					0	0	0			REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	REV__ENST00000315087.11_1_18:44336738-44337041:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	837.457727	836.450451	0.57829	0.00048429	-0.03977	-3.3306E-05	0.53852	0.00045099	837.4576672918523	23.376	0.41908	23.128	22.853	23.272	-0.24775	-0.013336	-1.9514E-05	NaN	65.235	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4274200	+		12997	14858	7687	7730							0.025683624117505133
GRQRRSEW	8	Unmodified	_GRQRRSEW_					0	0	0		ENST00000564709.5_1_16:1831801-1831870:-|nuORF	ENST00000564709.5_1_16:1831801-1831870:-|nuORF	ENST00000564709.5_1_16:1831801-1831870:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	358.2069396972656	3	358.856568	1073.54787	0.042147	1.5125E-05	2.1337	0.0007657	2.1759	0.00078082	359.1915676872762	26.205	0.15602	25.844	25.713	25.87	-0.36164					4	2	2	0	0	0	0.33304	1	9427	9427		0.40072	0	1	5055300			12998	8849	7688	7731	12469	12469					0.014041443406085818
GRRDPGAPP	9	Unmodified	_GRRDPGAPP_					0	0	0			REV__ENST00000594962.5_1_19:17611587-17615418:+|nuORF	REV__ENST00000594962.5_1_19:17611587-17615418:+|nuORF	MSMS	HCT116MG_D190212_S4	4	462.2181396484375	2	461.746308	921.478063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.776	1	20.566	20.066	21.066	-0.20959								0	0	0	0.71946	1	7133	7133		18.146	0.011366	1		+		12999	16716	7689	7732	12470	12470					0.014182656719867737
GRRKRPACDPE	11	Unmodified	_GRRKRPACDPE_					0	0	0		ENSG00000125352|ENST00000371442|RNF113A	ENSG00000125352|ENST00000371442|RNF113A	ENSG00000125352|ENST00000371442|RNF113A	MSMS	HCT116MG_D190212_S1	1	429.0885925292969	3	428.891172	1283.65169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1127	1	6.1127	5.6127	6.6127	0								0	0	0	0.9619	1	1840	1840		0.094841	0	1				13000	2879	7690	7733	12471	12471					0.02120683385942357
GRRLLLLLL	9	Unmodified	_GRRLLLLLL_					0	0	0			REV__LYPD3|p.G26R|1|0.62|ENSG00000124466|chr19:43465496-43465496|C/T|missense_variant	REV__LYPD3|p.G26R|1|0.62|ENSG00000124466|chr19:43465496-43465496|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	356.2541809082031	3	356.253488	1065.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.484	1	32.205	31.705	32.705	-0.27841								0	0	0	0.77018	1	11907	11907		0.26902	0.26902	1		+		13001	16997	7691	7734	12472	12472					0.20839457669990225
GRRLLLLLL	9	Unmodified	_GRRLLLLLL_					0	0	0			REV__LYPD3|p.G26R|1|0.62|ENSG00000124466|chr19:43465496-43465496|C/T|missense_variant	REV__LYPD3|p.G26R|1|0.62|ENSG00000124466|chr19:43465496-43465496|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	356.25439453125	3	356.253488	1065.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.611	1	28.279	27.779	28.779	-0.33138								0	0	0	0.77018	1	10296	10296		0.26902	0.26902	1		+		13002	16997	7691	7734	12473	12473					0.20839457669990225
GRRRTVPGGP	10	Unmodified	_GRRRTVPGGP_					0	0	0		SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	527.2822265625	2	526.807231	1051.59991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.707	1	26.351	25.851	26.851	-0.35541								0	0	0	0.90023	1	9674	9674		15.847	3.3156	1				13003	18227	7692	7735	12474	12474					0.07617307754367175
GRSCEDFQ	8	Unmodified	_GRSCEDFQ_					0	0	0		nc|ENSG00000092098|Q96EP0-3|RNF31;ENSG00000092098|ENST00000324103|RNF31;RNF31|p.R837Q|1|0.36|ENSG00000092098|chr14:24157306-24157306|G/A|missense_variant	nc|ENSG00000092098|Q96EP0-3|RNF31	nc|ENSG00000092098|Q96EP0-3|RNF31	MSMS	HCT116MG_D190212_S1	1	471.1906433105469	2	471.192716	940.37088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.991	1	26.991	26.491	27.491	0								0	0	0	0.8837	1	9776	9776		9.3474	0.75416	1				13004	1574	7693	7736	12475	12475					-0.10169072324549688
GRSQCTCC	8	Unmodified	_GRSQCTCC_					0	0	0			REV__ENST00000317147.9_1_16:58554804-58554855:-|nuORF	REV__ENST00000317147.9_1_16:58554804-58554855:-|nuORF	MSMS	HCT116MG_D190212_S1	1	429.15765380859375	2	429.156765	856.298977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.593	1	63.593	63.093	64.093	0								0	0	0	0.8837	1	24566	24566		0.69038	0.69038	1		+		13005	14866	7694	7737	12476	12476					-0.13492026274275304
GRSQCTCC	8	Unmodified	_GRSQCTCC_					0	0	0			REV__ENST00000317147.9_1_16:58554804-58554855:-|nuORF	REV__ENST00000317147.9_1_16:58554804-58554855:-|nuORF	MSMS	HCT116MG_D190212_S2	2	429.15771484375	2	429.156765	856.298977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.549	1	63.427	62.927	63.927	-0.12264								0	0	0	0.8837	1	24631	24631		0.69038	0.088878	1		+		13006	14866	7694	7737	12477	12477					-0.13492026274275304
GRTGDQGPAGP	11	Unmodified	_GRTGDQGPAGP_					0	0	0			REV__COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	REV__COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	506.74639892578125	2	506.743962	1011.47337	0.33412	0.00016931	1.3308	0.0006744	1.665	0.00084371	506.7439824057326	21.585	0.93652	21.199	20.959	21.896	-0.38503					23	17	3	0	0	0	0.70662	1	7660	7660		19.362	3.5148	1	8525200	+		13007	10230	7695	7738	12478	12478					-0.03190663261420923
GRWNKPRQRRI	11	Unmodified	_GRWNKPRQRRI_					0	0	0		ENST00000508878.5_1_5:127412691-127417708:-|nuORF	ENST00000508878.5_1_5:127412691-127417708:-|nuORF	ENST00000508878.5_1_5:127412691-127417708:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	366.674560546875	4	367.469547	1465.84908	-0.21221	-7.7981E-05	-0.48909	-0.00017973	-0.7013	-0.00025771	367.4694308136144	23.657	0.15569	23.274	23.195	23.351	-0.38324					4	2	2	0	0	0	0.36603	1	8439	8439		2.4348	1.4212	1	7097400			13008	8483	7696	7739	12479	12479					0.13479070710923224
GRYHVIRKL	9	Unmodified	_GRYHVIRKL_					0	0	0		SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1;ENST00000513367.1_1_6:35855779-35888866:-|nuORF;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK1|p.I192Nfs*10|1|0.27|ENSG00000096063|chr6:35874243-35874244|-/T|frameshift_variant;SRPK1|p.I192Lfs*32|1|0.31|ENSG00000096063|chr6:35874244-35874244|T/-|frameshift_variant;SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant;SRPK2|p.Q368Sfs*16|1|0.04|ENSG00000135250|chr7:105142416-105142417|-/AGGA|frameshift_variant;nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2	SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant	SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	381.2364807128906	3	381.236608	1140.688	-0.14786	-5.637E-05	-0.0056845	-2.1671E-06	-0.15355	-5.8537E-05	381.2365509354228	22.825	0.15581	22.44	22.362	22.518	-0.3852					4	2	2	0	0	0	0.01389	1	8131	8131		103.42	64.206	1	14563000			13009	1616	7697	7740	12480	12480					0.12327928344984684
GRYHVIRKL	9	Unmodified	_GRYHVIRKL_					0	0	0		SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1;ENST00000513367.1_1_6:35855779-35888866:-|nuORF;ENST00000476117.1_1_7:104800923-104844162:-|nuORF;SRPK1|p.I192Nfs*10|1|0.27|ENSG00000096063|chr6:35874243-35874244|-/T|frameshift_variant;SRPK1|p.I192Lfs*32|1|0.31|ENSG00000096063|chr6:35874244-35874244|T/-|frameshift_variant;SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant;SRPK2|p.Q368Sfs*16|1|0.04|ENSG00000135250|chr7:105142416-105142417|-/AGGA|frameshift_variant;nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2	SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant	SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	571.351318359375	2	571.351274	1140.688	0.37505	0.00021428	-0.36053	-0.00020599	0.014523	8.2975E-06	571.3510893391385	22.825	0.20804	22.44	22.31	22.518	-0.3852					5	3	2	0	0	0	0.11023	1	8134	8134		56.177	18.203	1	7792400			13010	1616	7697	7740	12481	12481					0.12327928344984684
GSCSCSSDLC	10	Unmodified	_GSCSCSSDLC_					0	0	0			REV__ENST00000434267.5_1_3:48040322-48057851:-|nuORF	REV__ENST00000434267.5_1_3:48040322-48057851:-|nuORF	MSMS	HCT116MG_D190212_S1	1	481.1581115722656	2	481.156628	960.298702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.867	1	20.867	20.367	21.367	0								0	0	0	0.95507	1	7316	7316		3.5965	1.019	1		+		13011	15605	7698	7741	12482	12482					-0.1830349078479685
GSDCTTIHY	9	Carbamidomethyl (C)	_GSDC(Carbamidomethyl (C))TTIHY_	GSDC(1)TTIHY		GSDC(150)TTIHY		0	1	0		TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant;TP53|p.Y236C|1|0.64|ENSG00000141510|chr17:7674256-7674256|T/C|missense_variant;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-7|TP53;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;ENSG00000141510|ENST00000269305|TP53	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	527.2193603515625	2	527.218931	1052.42331	0.62297	0.00032844	-0.22128	-0.00011666	0.40169	0.00021178	527.218790159644	28.455	0.31967	28.455	28.268	28.588	0					12	5	3	0	0	0	0.0043177	1	10373	10373		146.01	99.986	1	27492000			13012	3725	7699	7742	12483	12483	19				-0.10080533981590634
GSDCTTIHY	9	Carbamidomethyl (C)	_GSDC(Carbamidomethyl (C))TTIHY_	GSDC(1)TTIHY		GSDC(150)TTIHY		0	1	0		TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant;TP53|p.Y236C|1|0.64|ENSG00000141510|chr17:7674256-7674256|T/C|missense_variant;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-7|TP53;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;ENSG00000141510|ENST00000269305|TP53	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2190551757812	2	527.218931	1052.42331	0.3737	0.00019702	-0.045156	-2.3807E-05	0.32855	0.00017322	527.2188331258371	28.881	0.30698	28.564	28.402	28.709	-0.31613					9	5	2	0	0	0	0.0043177	1	10562	10562		146.01	106.05	1	69365000			13013	3725	7699	7742	12484	12484	19				-0.10080533981590634
GSDCTTIHY	9	Carbamidomethyl (C)	_GSDC(Carbamidomethyl (C))TTIHY_	GSDC(1)TTIHY		GSDC(150)TTIHY		0	1	0		TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant;TP53|p.Y236C|1|0.64|ENSG00000141510|chr17:7674256-7674256|T/C|missense_variant;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-7|TP53;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;ENSG00000141510|ENST00000269305|TP53	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	527.2193603515625	2	527.218931	1052.42331	0.57584	0.0003036	-0.22969	-0.00012109	0.34616	0.0001825	527.2186971473354	28.881	0.41645	28.659	28.473	28.89	-0.22195					12	7	3	0	0	0	0.0037442	1	10472	10472		154.46	93.106	1	16782000			13014	3725	7699	7742	12485	12485	19				-0.10080533981590634
GSDCTTIHY	9	Unmodified	_GSDCTTIHY_					0	0	0		TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant;TP53|p.Y236C|1|0.64|ENSG00000141510|chr17:7674256-7674256|T/C|missense_variant;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-7|TP53;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;ENSG00000141510|ENST00000269305|TP53	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	498.70819091796875	2	498.708199	995.401846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.83	1	30.563	30.063	31.063	-0.26704								0	0	0	0.11425	1	11350	11350		53.576	15.424	1				13015	3725	7699	7743	12486	12486					-0.09603919010305617
GSDCTTIHY	9	Unmodified	_GSDCTTIHY_					0	0	0		TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant;TP53|p.Y236C|1|0.64|ENSG00000141510|chr17:7674256-7674256|T/C|missense_variant;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R335Lfs*10|1|0.74|ENSG00000141510|chr17:7670705-7670705|C/-|frameshift_variant;TP53|p.E336Sfs*9|1|0.15|ENSG00000141510|chr17:7670704-7670704|A/-|frameshift_variant;TP53|p.P301Qfs*44|1|0.5|ENSG00000141510|chr17:7673718-7673718|G/-|frameshift_variant;TP53|p.P322Hfs*23|1|0.53|ENSG00000141510|chr17:7673563-7673563|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.R290Kfs*53|1|0.62|ENSG00000141510|chr17:7673747-7673753|CTTGCGG/-|frameshift_variant;TP53|p.R280Kfs*59|1|0.41|ENSG00000141510|chr17:7673763-7673781|TCCTCTGTGCGCCGGTCTC/-|frameshift_variant;TP53|p.Q331Sfs*6|1|0.66|ENSG00000141510|chr17:7673537-7673538|-/A|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.13|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-7|TP53;TP53|p.C242Afs*5|1|0.54|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;ENSG00000141510|ENST00000269305|TP53	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	TP53|p.Y236H|1|0.67|ENSG00000141510|chr17:7674257-7674257|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	498.7082214355469	2	498.708199	995.401846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.927	1	30.666	30.166	31.166	-0.26071								0	0	0	0.034849	1	11280	11280		77.984	24.409	1				13016	3725	7699	7743	12487	12487					-0.09603919010305617
GSDDGVLAY	9	Unmodified	_GSDDGVLAY_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.Y1316Tfs*56|3|0.29|ENSG00000185920|chr9:95447311-95447311|G/-|frameshift_variant;PTCH1|p.R1308Efs*64|1|0.24|ENSG00000185920|chr9:95447335-95447335|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF;PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-MSMS	HCT116MG_D190212_S2	2	896.39990234375	1	896.399603	895.392327	1.238	0.0011097	0.16953	0.00015197	1.4075	0.0012617	896.3992790271677	40.408	0.25919	40.339	40.157	40.416	-0.069626					7	4	2	0	0	0	0.031005	1	15248	15248		85.357	49.313	1	15386000			13017	5855	7700	7744	12488	12488					-0.05955364024202936
GSDDGVLAY	9	Unmodified	_GSDDGVLAY_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.Y1316Tfs*56|3|0.29|ENSG00000185920|chr9:95447311-95447311|G/-|frameshift_variant;PTCH1|p.R1308Efs*64|1|0.24|ENSG00000185920|chr9:95447335-95447335|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF;PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-MSMS	HCT116MG_D190212_S3	3	896.4005737304688	1	896.399603	895.392327	1.0783	0.0009666	-0.52199	-0.00046791	0.55633	0.00049869	896.3991650864209	40.613	0.36423	40.312	40.111	40.476	-0.30161					10	6	2	0	0	0	0.019399	1	15085	15085		97.075	58.923	1	6869800			13018	5855	7700	7744	12489	12489					-0.05955364024202936
GSDDTELRY	9	Unmodified	_GSDDTELRY_					0	0	0		ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	528.236328125	2	528.235635	1054.45672	0.35979	0.00019005	0.36841	0.00019461	0.72821	0.00038466	528.2358372884113	30.945	0.20768	30.678	30.56	30.768	-0.26704					5	3	2	0	0	0	0.0045841	1	11408	11408		142.08	76.845	1	14843000			13019	8302	7701	7745	12490	12490					-0.06833208938041935
GSDDTELRY	9	Unmodified	_GSDDTELRY_					0	0	0		ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	528.2357788085938	2	528.235635	1054.45672	0.33129	0.000175	0.25415	0.00013425	0.58544	0.00030925	528.2356803979931	31.152	0.46958	30.891	30.552	31.022	-0.26071					14	8	2	0	0	0	0.0045841	1	11357	11357		142.08	80.722	1	7457200			13020	8302	7701	7745	12491	12491					-0.06833208938041935
GSDEPAFM	8	Unmodified	_GSDEPAFM_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	853.3391723632812	1	853.339646	852.332369	0.80245	0.00068476	0.15748	0.00013439	0.95993	0.00081915	853.3394479142478	43.506	0.30959	43.433	43.252	43.561	-0.073376					8	5	2	0	0	0	0.065436	1	16532	16532		106.85	59.925	1	13702000			13021	4239	7702	7746	12492	12492					-0.0997037795906408
GSDEPAFMYY	10	Unmodified	_GSDEPAFMYY_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	1179.46484375	1	1179.4663	1178.45903	0.35124	0.00041427	0.062167	7.3324E-05	0.4134	0.0004876	1179.4663985797522	53.387	0.41106	53.198	53.018	53.429	-0.18922					18	7	3	0	0	0	0.047709	1	20517	20517		88.904	60.417	1	57865000			13022	4239	7703	7747	12493	12493					-0.12306496524593058
GSDEPAFMYY	10	Unmodified	_GSDEPAFMYY_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	590.236328125	2	590.23679	1178.45903	0.45076	0.00026606	-0.48089	-0.00028384	-0.03013	-1.7784E-05	590.2362535585428	53.371	0.35954	53.181	53.018	53.377	-0.18922					10	6	2	0	0	0	0.65652	1	20565	20565		24.021	16.11	1	10448000			13023	4239	7703	7747	12494	12494					-0.12306496524593058
GSDEPAFMYY	10	Unmodified	_GSDEPAFMYY_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	1179.4674072265625	1	1179.4663	1178.45903	0.64348	0.00075897	-0.11201	-0.00013211	0.53147	0.00062685	1179.466206103953	53.555	0.36562	53.251	53.035	53.401	-0.30305					15	6	3	0	0	0	0.037761	1	20249	20249		96.285	67.798	1	5748100			13024	4239	7703	7747	12495	12495					-0.12306496524593058
GSDEPAFMYY	10	Unmodified	_GSDEPAFMYY_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	590.9550170898438	2	590.23679	1178.45903	0.66913	0.00039495	-0.065949	-3.8926E-05	0.60318	0.00035602	590.2365732887305	53.521	0.26118	53.218	53.035	53.296	-0.30305					5	4	2	0	0	0	0.86339	1	20275	20275		6.7232	2.7788	1	2672900			13025	4239	7703	7747	12496	12496					-0.12306496524593058
GSDEPAFMYY	10	Unmodified	_GSDEPAFMYY_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MSMS	HCT116MG_D190212_S3	3	590.2373046875	2	590.23679	1178.45903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.6	1	53.299	52.799	53.799	-0.30122								0	0	0	0.7978	1	20290	20290		29.082	18.258	1				13026	4239	7703	7747	12497	12497					-0.12306496524593058
GSDFYSMHY	9	Unmodified	_GSDFYSMHY_					0	0	0		ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	553.716552734375	2	553.716024	1105.4175	0.50478	0.0002795	-0.079071	-4.3783E-05	0.42571	0.00023572	553.7161333805384	41.559	0.25568	41.491	41.345	41.601	-0.068195					10	4	3	0	0	0	0.0066639	1	15730	15730		123.1	86.969	1	29143000			13027	6098	7704	7748	12498	12498					-0.1309963249325392
GSDFYSMHY	9	Unmodified	_GSDFYSMHY_					0	0	0		ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	553.716024	1105.4175	0.3083	0.00017071	0.27317	0.00015126	0.58147	0.00032197	553.7169252903386	41.901	0.17487	41.599	41.45	41.625	-0.30257	0.053837	0.00036238	NaN	123.1	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3935200			13028	6098	7704	7748							-0.1309963249325392
GSDGGQSVY	9	Unmodified	_GSDGGQSVY_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	HCT116MG_D190212_S1	1	869.3638916015625	1	869.363552	868.356276	0.72571	0.0006309	-0.17606	-0.00015306	0.54965	0.00047785	869.3636260594662	23.758	0.36614	23.758	23.627	23.993	0					9	6	2	0	0	0	0.020181	1	8482	8482		96.285	21.862	1	15063000			13029	5081	7705	7749	12499	12499					-0.08316821201037783
GSDGGQSVY	9	Unmodified	_GSDGGQSVY_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	HCT116MG_D190212_S2	2	869.3641357421875	1	869.363552	868.356276	1.0703	0.00093045	0.10304	8.9582E-05	1.1733	0.00102	869.3633996601744	24.072	0.41549	23.689	23.508	23.923	-0.38324					15	7	3	0	0	0	0.012168	1	8612	8612		108	33.574	1	44450000			13030	5081	7705	7749	12500	12500					-0.08316821201037783
GSDGGQSVY	9	Unmodified	_GSDGGQSVY_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	HCT116MG_D190212_S3	3	869.3639526367188	1	869.363552	868.356276	0.74783	0.00065013	0.00033694	2.9293E-07	0.74816	0.00065043	869.3632187001941	23.826	0.41706	23.765	23.582	23.999	-0.061449					11	7	2	0	0	0	0.012168	1	8419	8419		108	33.574	1	10900000			13031	5081	7705	7749	12501	12501					-0.08316821201037783
GSDKINYTY	9	Unmodified	_GSDKINYTY_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;NKRF|p.R664Dfs*7|1|0.22|ENSG00000186416|chrX:119589435-119589435|T/-|frameshift_variant;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-MSMS	HCT116MG_D190212_S1	1	530.751220703125	2	530.750921	1059.48729	0.42771	0.00022701	0.32004	0.00016986	0.74774	0.00039687	530.7508761208878	30.633	0.26017	30.633	30.503	30.763	0					13	4	4	0	0	0	0.0034607	1	11246	11246		163.04	110.77	1	14670000			13032	5882	7706	7750	12502	12502					-0.040074305529969934
GSDKINYTY	9	Unmodified	_GSDKINYTY_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;NKRF|p.R664Dfs*7|1|0.22|ENSG00000186416|chrX:119589435-119589435|T/-|frameshift_variant;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-MSMS	HCT116MG_D190212_S2	2	530.751220703125	2	530.750921	1059.48729	0.34179	0.00018141	0.67775	0.00035972	1.0195	0.00054113	530.7509203773106	30.864	0.2594	30.597	30.456	30.716	-0.26704					14	4	4	0	0	0	0.0096523	1	11363	11363		114.2	63.347	1	73931000			13033	5882	7706	7750	12503	12503					-0.040074305529969934
GSDKINYTY	9	Unmodified	_GSDKINYTY_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;NKRF|p.R664Dfs*7|1|0.22|ENSG00000186416|chrX:119589435-119589435|T/-|frameshift_variant;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MSMS	HCT116MG_D190212_S3	3	530.7513427734375	2	530.750921	1059.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.072	1	30.811	30.311	31.311	-0.26071								0	0	0	0.012293	1	11338	11338		103.35	57.333	1				13034	5882	7706	7750	12504	12504					-0.040074305529969934
GSDNYEFPDE	10	Unmodified	_GSDNYEFPDE_					0	0	0			REV__ENSG00000215356|ENST00000400120|ZNF705B	REV__ENSG00000215356|ENST00000400120|ZNF705B	MSMS	HCT116MG_D190212_S1	1	391.483154296875	3	391.484131	1171.43056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.349	1	25.349	24.849	25.849	0								0	0	0	0.91279	1	9114	9114		7.9454	3.5392	1		+		13035	14283	7707	7751	12505	12505					-0.1482952290018602
GSDPHPPLP	9	Unmodified	_GSDPHPPLP_					0	0	0			REV__ENST00000233027.9_1_3:52804704-52804962:-|nuORF	REV__ENST00000233027.9_1_3:52804704-52804962:-|nuORF	MSMS	HCT116MG_D190212_S1	1	458.72869873046875	2	458.729792	915.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.602	1	27.602	27.102	28.102	0								0	0	0	0.76669	1	10023	10023		12.532	3.9383	1		+		13036	14549	7708	7752	12506	12506					-0.016073611707156488
GSDPYVRMY	9	Unmodified	_GSDPYVRMY_					0	0	0		nc|ENSG00000117868|A0FGR8-5|ESYT2;ENST00000435514.3_1_7:158526900-158536411:-|nuORF;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-5|ESYT2	nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-MSMS	HCT116MG_D190212_S1	1	543.8267211914062	2	544.247492	1086.48043	0.92204	0.00050182	-0.13786	-7.503E-05	0.78418	0.00042679	544.2475039445043	37.455	0.15112	37.455	37.348	37.499	0					4	2	2	0	0	0	0.59439	1	13954	13954		11.495	4.2055	1	5781700			13037	2590	7709	7753	12507	12507					-0.05935066705205827
GSDRFGRDLNY	11	Unmodified	_GSDRFGRDLNY_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;HNRNPH2|p.L296Yfs*20|1|0.57|ENSG00000126945|chrX:101412869-101412869|G/-|frameshift_variant;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MSMS	HCT116MG_D190212_S2	2	650.30810546875	2	650.307458	1298.60036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.228	1	31.998	31.498	32.498	-0.23009								0	0	0	0.63979	1	11917	11917		41.347	17.326	1				13038	5046	7710	7754	12508	12508					-0.03699362107067827
GSDRSSFSHY	10	Unmodified	_GSDRSSFSHY_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	571.7471313476562	2	571.746702	1141.47885	0.27425	0.0001568	0.35493	0.00020293	0.62918	0.00035973	571.7468924607043	23.392	0.26106	23.392	23.262	23.523	0					14	4	4	0	0	0	0.034595	2	8329	8297;8329		111.31	57.905	1	49395000			13039	3778	7711	7755	12509;12510	12510					-0.08622984469593575
GSDRSSFSHY	10	Unmodified	_GSDRSSFSHY_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	381.50006103515625	3	381.500227	1141.47885	-0.18485	-7.052E-05	0.12479	4.7607E-05	-0.060058	-2.2912E-05	381.5002147843348	23.392	0.3132	23.392	23.21	23.523	0					10	5	3	0	0	0	0.22188	1	8336	8336		57.477	27.045	1	16569000			13040	3778	7711	7755	12511	12511					-0.08622984469593575
GSDRSSFSHY	10	Unmodified	_GSDRSSFSHY_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	571.7468872070312	2	571.746702	1141.47885	0.59145	0.00033816	-0.13371	-7.6447E-05	0.45774	0.00026171	571.7465595080663	24.021	0.36319	23.637	23.456	23.819	-0.38324					11	6	2	0	0	0	0.049091	1	8589	8589		108.26	65.95	1	199510000			13041	3778	7711	7755	12512	12512					-0.08622984469593575
GSDRSSFSHY	10	Unmodified	_GSDRSSFSHY_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	381.50018310546875	3	381.500227	1141.47885	0.079386	3.0286E-05	0.13529	5.1613E-05	0.21467	8.1898E-05	381.5001619109352	24.021	0.3114	23.637	23.456	23.767	-0.38324					11	5	3	0	0	0	0.12834	1	8593	8593		68.484	34.663	1	57191000			13042	3778	7711	7755	12513	12513					-0.08622984469593575
GSDRSSFSHY	10	Unmodified	_GSDRSSFSHY_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	571.7467041015625	2	571.746702	1141.47885	0.46976	0.00026859	0.53051	0.00030332	1.0003	0.0005719	571.7466060776222	23.409	0.2085	23.369	23.239	23.448	-0.03968					9	3	3	0	0	0	0.47073	1	8269	8269		42.312	26.465	1	7056900			13043	3778	7711	7755	12514	12514					-0.08622984469593575
GSDRSSFSHY	10	Unmodified	_GSDRSSFSHY_					0	0	0		ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	ENST00000510079.2_1_4:79102321-79102666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	381.5001525878906	3	381.500227	1141.47885	-0.069801	-2.6629E-05	-0.36833	-0.00014052	-0.43813	-0.00016715	381.5001603610644	23.409	0.2085	23.369	23.239	23.448	-0.03968					5	3	2	0	0	0	0.77375	1	8283	8283		14.218	2.7235	1	2817900			13044	3778	7711	7755	12515	12515					-0.08622984469593575
GSDSEEFGSNT	11	Unmodified	_GSDSEEFGSNT_					0	0	0			REV__nc|ENSG00000065413|Q8N8A2-4|ANKRD44	REV__nc|ENSG00000065413|Q8N8A2-4|ANKRD44	MULTI-SECPEP	HCT116MG_D190212_S2	2	377.8765563964844	3	377.147519	1128.42073	-0.18057	-6.8102E-05	0.64449	0.00024307	0.46392	0.00017496	377.14771256713146	27.782	0.35937	27.44	27.295	27.655	-0.34201					11	6	3	0	0	0	0.36423	1	10167	10167		1.0136	0.38675	1	36163000	+		13045	9944	7712	7756	12516	12516					-0.138347109055303
GSDYISYYQQ	10	Unmodified	_GSDYISYYQQ_					0	0	0			REV__ENSG00000269437|ENST00000602195|NXF2B	REV__ENSG00000269437|ENST00000602195|NXF2B	MULTI-SECPEP	HCT116MG_D190212_S2	2	612.7990112304688	2	612.264393	1222.51423	0.44587	0.00027299	0.76637	0.00046922	1.2122	0.00074221	612.2648545773328	45.632	0.30777	45.53	45.35	45.658	-0.1014					7	5	2	0	0	0	0.2996	1	17301	17301		19.362	3.5148	1	83739000	+		13046	14435	7713	7757	12517	12517					-0.08812366732468035
GSFAGEDHC	9	Unmodified	_GSFAGEDHC_					0	0	0			REV__ENST00000300682.14_2_17:77078499-77078748:+|nuORF	REV__ENST00000300682.14_2_17:77078499-77078748:+|nuORF	MSMS	HCT116MG_D190212_S2	2	461.6711120605469	2	461.671617	921.328681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.4982	1	4.4092	3.9092	4.9092	-0.089082								0	0	0	0.77025	1	1419	1419		0	0	1		+		13047	14779	7714	7758	12518	12518					-0.13513047732942596
GSFLVLLP	8	Unmodified	_GSFLVLLP_					0	0	0		TDRD10|p.L176P|1|0.09|ENSG00000163239|chr1:154543986-154543986|T/C|missense_variant	TDRD10|p.L176P|1|0.09|ENSG00000163239|chr1:154543986-154543986|T/C|missense_variant	TDRD10|p.L176P|1|0.09|ENSG00000163239|chr1:154543986-154543986|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	423.7287902832031	2	423.260197	844.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.277	1	32.047	31.547	32.547	-0.23009								0	0	0	0.8837	1	11937	11937		14.582	0	1				13048	18261	7715	7759	12519	12519					0.07736775879516244
GSFQIIVY	8	Unmodified	_GSFQIIVY_					0	0	0			REV__ENST00000505280.1_1_4:119754677-119754851:-|nuORF	REV__ENST00000505280.1_1_4:119754677-119754851:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	463.7524108886719	2	463.752736	925.490919	-0.055962	-2.5953E-05	-0.11856	-5.4984E-05	-0.17453	-8.0937E-05	463.7525353720238	40.12	0.62255	40.12	39.813	40.435	0					16	11	2	0	0	0	0.60054	1	15034	15034		32.305	2.0807	1	7152400	+		13049	16138	7716	7760	12520	12520					0.025192840115323634
GSGFCDNMLAD	11	Unmodified	_GSGFCDNMLAD_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	HCT116MG_D190212_S2	2	565.2184448242188	2	565.218074	1128.42159	0.44253	0.00025013	-0.2692	-0.00015215	0.17334	9.7974E-05	565.218043455123	27.766	0.51496	27.424	27.243	27.758	-0.34201					22	9	4	0	0	0	0.67406	1	10103	10103		27.223	0	1	245050000			13050	9444	7717	7761	12521	12521					-0.13747911061841478
GSGTQGNQL	9	Unmodified	_GSGTQGNQL_					0	0	0			REV__ENST00000481166.6_1_3:44803368-44835731:+|nuORF	REV__ENST00000481166.6_1_3:44803368-44835731:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	431.19012451171875	2	431.206681	860.398809	0.0063631	2.7438E-06	-0.82976	-0.0003578	-0.8234	-0.00035506	431.20637344050385	22.767	0.20852	22.767	22.637	22.845	0					7	3	3	0	0	0	0.60612	1	8052	8052		10.824	2.0785	1	3145500	+		13051	15952	7718	7762	12522	12522					-0.036974260728015906
GSHAVLVY	8	Unmodified	_GSHAVLVY_					0	0	0			REV__ENSG00000115267|ENST00000649979|IFIH1	REV__ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	HCT116MG_D190212_S2	2	423.22943115234375	2	423.229428	844.444303	0.092111	3.8984E-05	0.22124	9.3635E-05	0.31335	0.00013262	423.2294853118193	25.79	0.25874	25.42	25.291	25.55	-0.36914					9	4	3	0	0	0	0.43493	1	9312	9312		46.921	12.734	1	18048000	+		13052	11536	7719	7763	12523	12523					0.015858441802379275
GSHFEVTAQ	9	Unmodified	_GSHFEVTAQ_					0	0	0			REV__nc|ENSG00000118482|Q92576-2|PHF3	REV__nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	HCT116MG_D190212_S1	1	488.75042724609375	2	488.230156	974.445759	0.26862	0.00013115	0.33603	0.00016406	0.60466	0.00029521	488.23029993978605	27.188	0.26037	27.188	27.022	27.282	0					7	4	2	0	0	0	0.21251	1	9818	9818		39.957	15.937	1	4450000	+		13053	11635	7720	7764	12524	12524					-0.042485665216759116
GSHSMRYF	8	Unmodified	_GSHSMRYF_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-3|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-7|HLA-G;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.R72Gfs*5|1|0.25|ENSG00000234745|chr6:31356818-31356818|C/-|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;HLA-B|p.P81Rfs*70|1|0.56|ENSG00000234745|chr6:31356791-31356791|C/-|frameshift_variant	nc|ENSG00000206503|P04439-2|HLA-A;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S1	1	492.72161865234375	2	492.721444	983.428335	0.23603	0.0001163	-0.06919	-3.4091E-05	0.16684	8.2205E-05	492.7214277878872	31.987	0.20873	31.987	31.857	32.066	0					5	3	2	0	0	0	0.15825	1	11811	11811		81.89	58.742	1	6354000			13054	6396;6522	7721	7765	12525	12525					-0.06404185328312906
GSHSMRYFF	9	Unmodified	_GSHSMRYFF_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	MSMS	HCT116MG_D190212_S2	2	566.4765014648438	2	566.255651	1130.49675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.106	1	45.013	44.513	45.513	-0.092472								0	0	0	0.067027	1	17145	17145		65.474	38.59	1				13055	6396	7722	7766	12526	12526					-0.0632794074845151
GSIYGYTHPPS	11	Unmodified	_GSIYGYTHPPS_					0	0	0			REV__ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant	REV__ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	589.778076171875	2	589.77747	1177.54039	0.53222	0.00031389	0.64645	0.00038126	1.1787	0.00069515	589.7780524616073	38.441	0.26569	38.348	38.27	38.536	-0.09301					5	4	2	0	0	0	0.70377	1	14477	14477		20.415	3.3016	1	11796000	+		13056	13264	7723	7767	12527	12527					-0.041280527703293046
GSKMKTMKSRM	11	Unmodified	_GSKMKTMKSRM_					0	0	0			REV__ENST00000544253.1_1_11:94230013-94230121:+|nuORF	REV__ENST00000544253.1_1_11:94230013-94230121:+|nuORF	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.891016	1283.65122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5343	1	1.5952	1.0952	2.0952	0.060905								0	0	0	0.96208	1	471	471		0	0	1		+		13057	16386	7724	7768	12528	12528					0.020738043502205983
GSKMKTMKSRM	11	Unmodified	_GSKMKTMKSRM_					0	0	0			REV__ENST00000544253.1_1_11:94230013-94230121:+|nuORF	REV__ENST00000544253.1_1_11:94230013-94230121:+|nuORF	MSMS	HCT116MG_D190212_S3	3	429.088623046875	3	428.891016	1283.65122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6268	1	7.6407	7.1407	8.1407	0.013901								0	0	0	0.96208	1	2298	2298		0	0	1		+		13058	16386	7724	7768	12529	12529					0.020738043502205983
GSKMKTMKSRM	11	Unmodified	_GSKMKTMKSRM_					0	0	0			REV__ENST00000544253.1_1_11:94230013-94230121:+|nuORF	REV__ENST00000544253.1_1_11:94230013-94230121:+|nuORF	MSMS	HCT116MG_D190212_S3	3	429.088623046875	3	428.891016	1283.65122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.675	1	10.715	10.215	11.215	0.039975								0	0	0	0.96208	1	3243	3243		0	0	1		+		13059	16386	7724	7768	12530	12530					0.020738043502205983
GSLASLHPRP	10	Unmodified	_GSLASLHPRP_					0	0	0		ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	MSMS	HCT116MG_D190212_S3	3	517.7916259765625	2	517.790715	1033.56688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.817	1	39.516	39.016	40.016	-0.30137								0	0	0	0.82636	1	14771	14771		25.399	7.253	1				13060	4800	7725	7769	12531	12531					0.051436809116466975
GSLLVGPV	8	Unmodified	_GSLLVGPV_					0	0	0		CIITA|p.G655Pfs*32|1|0.4|ENSG00000179583|chr16:10907447-10907448|-/CC|frameshift_variant;CIITA|p.K958Rfs*37|1|0.34|ENSG00000179583|chr16:10910242-10910242|A/-|frameshift_variant;CIITA|p.E950Gfs*47|1|0.08|ENSG00000179583|chr16:10910215-10910216|-/G|frameshift_variant;ENSG00000179583|ENST00000324288|CIITA	CIITA|p.G655Pfs*32|1|0.4|ENSG00000179583|chr16:10907447-10907448|-/CC|frameshift_variant	CIITA|p.G655Pfs*32|1|0.4|ENSG00000179583|chr16:10907447-10907448|-/CC|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	371.2275390625	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.454	1	44.369	43.869	44.869	-0.084797								0	0	0	0.8837	1	16883	16883		9.3474	0.75416	1				13061	463	7726	7770	12532	12532					0.06263629811326155
GSNCCQPC	8	Unmodified	_GSNCCQPC_					0	0	0		KRTAP9-2|p.R146H|1|0.26|ENSG00000239886|chr17:41227091-41227091|G/A|missense_variant;ENSG00000241595|ENST00000334109|KRTAP9-4;ENSG00000204873|ENST00000411528|KRTAP9-3;ENSG00000187272|ENST00000254072|KRTAP9-8;ENSG00000239886|ENST00000377721|KRTAP9-2	KRTAP9-2|p.R146H|1|0.26|ENSG00000239886|chr17:41227091-41227091|G/A|missense_variant	KRTAP9-2|p.R146H|1|0.26|ENSG00000239886|chr17:41227091-41227091|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	406.1285400390625	2	406.130216	810.245879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.462	1	64.462	63.962	64.962	0								0	0	0	0.8837	1	24864	24864		0.6015	0.14316	1				13062	5934	7727	7771	12533	12533					-0.16683404056948348
GSPAKTSK	8	Unmodified	_GSPAKTSK_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MSMS	HCT116MG_D190212_S1	1	388.2176818847656	2	388.21906	774.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.03	1	26.03	25.53	26.53	0								0	0	0	0.8837	1	9388	9388		2.0598	1.2661	1		+		13063	10850	7728	7772	12534	12534					0.027332538005680362
GSPAKTSK	8	Unmodified	_GSPAKTSK_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MSMS	HCT116MG_D190212_S3	3	388.2176818847656	2	388.21906	774.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.384	1	25.278	24.778	25.778	-0.10618								0	0	0	0.8837	1	9060	9060		1.8442	1.0506	1		+		13064	10850	7728	7772	12535	12535					0.027332538005680362
GSPDPGPGP	9	Unmodified	_GSPDPGPGP_					0	0	0		ENSG00000165312|ENST00000376495|OTUD1	ENSG00000165312|ENST00000376495|OTUD1	ENSG00000165312|ENST00000376495|OTUD1	MULTI-MSMS	HCT116MG_D190212_S3	3	780.3529663085938	1	780.352259	779.344983	0.75454	0.0005888	0.093543	7.2997E-05	0.84808	0.0006618	780.3522134980904	29.413	2.9255	29.187	27.167	30.093	-0.22611					87	55	2	0	0	0	0.13706	2	10787	10555;10787		50.855	1.8061	1	5667000			13065	4763	7729	7773	12536;12537	12537					-0.05351598504512367
GSPDPGPGP	9	Unmodified	_GSPDPGPGP_					0	0	0		ENSG00000165312|ENST00000376495|OTUD1	ENSG00000165312|ENST00000376495|OTUD1	ENSG00000165312|ENST00000376495|OTUD1	MULTI-MSMS	HCT116MG_D190212_S4	4	780.3524780273438	1	780.352259	779.344983	0.85938	0.00067062	0.049335	3.8499E-05	0.90871	0.00070912	780.3521794453936	29.158	3.8257	28.817	26.194	30.02	-0.34059					106	73	2	0	0	0	0.24973	1	9718	9718		36.044	5.8194	1	7050900			13066	4763	7729	7773	12538	12538					-0.05351598504512367
GSPGASPGPRQ	11	Unmodified	_GSPGASPGPRQ_					0	0	0		ENST00000572484.5_1_17:4269610-4269796:-|nuORF	ENST00000572484.5_1_17:4269610-4269796:-|nuORF	ENST00000572484.5_1_17:4269610-4269796:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7544250488281	2	505.75433	1009.49411	0.18034	9.1208E-05	0.14555	7.3611E-05	0.32589	0.00016482	505.7543173098741	16.746	0.3642	16.831	16.652	17.016	0.084467					13	6	3	0	0	0	0.39766	1	5590	5590		55.235	3.8194	1	4040600			13067	8903	7730	7774	12539	12539					-0.010260728817570453
GSPGASPGPRQ	11	Unmodified	_GSPGASPGPRQ_					0	0	0		ENST00000572484.5_1_17:4269610-4269796:-|nuORF	ENST00000572484.5_1_17:4269610-4269796:-|nuORF	ENST00000572484.5_1_17:4269610-4269796:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	505.755126953125	2	505.75433	1009.49411	-0.22467	-0.00011363	0.41461	0.00020969	0.18995	9.6066E-05	505.7543981644523	17.008	0.51705	16.841	16.66	17.177	-0.16664					11	9	2	0	0	0	0.30776	1	5616	5616		63.227	11.812	1	3384900			13068	8903	7730	7774	12540	12540					-0.010260728817570453
GSPGASPGPRQ	11	Unmodified	_GSPGASPGPRQ_					0	0	0		ENST00000572484.5_1_17:4269610-4269796:-|nuORF	ENST00000572484.5_1_17:4269610-4269796:-|nuORF	ENST00000572484.5_1_17:4269610-4269796:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	505.75433	1009.49411	0.18034	9.1208E-05	0.14555	7.3611E-05	0.32589	0.00016482	505.7543173098741	16.746	0.3642	16.831	16.652	17.016	0.084467	-0.0051792	-9.3375E-05	NaN	63.227	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4040600			13069	8903	7730	7774							-0.010260728817570453
GSPGPAGPK	9	Unmodified	_GSPGPAGPK_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;ENST00000471344.1_1_17:48271316-48272105:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	384.205810546875	2	384.205953	766.397353	-0.19252	-7.3967E-05	0.2133	8.1952E-05	0.020783	7.985E-06	384.2059524210699	12.09	0.30549	11.801	11.579	11.884	-0.28953					20	10	3	0	0	0	0.47809	1	3896	3896		18.146	4.2403	1	1197200			13070	513;514	7731	7775	12541	12541					0.004809846290982023
GSPGPAGPK	9	Unmodified	_GSPGPAGPK_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;ENST00000471344.1_1_17:48271316-48272105:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	767.4053344726562	1	767.404629	766.397353	0.84324	0.00064711	0.031457	2.414E-05	0.8747	0.00067125	767.4045087400867	15.163	0.41712	14.837	14.602	15.019	-0.32684					12	7	2	0	0	0	0.053544	1	5023	5023		72.968	1.0457	1	2773900			13071	513;514	7731	7775	12542	12542					0.004809846290982023
GSPGRKGPPG	10	Unmodified	_GSPGRKGPPG_					0	0	0			REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MSMS	HCT116MG_D190212_S4	4	455.24822998046875	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.893	1	36.509	36.009	37.009	-0.38486								0	0	0	0.95648	1	13519	13519		3.2813	0.39209	1		+		13072	10865	7732	7776	12543	12543					0.02491149814761684
GSPTFTDRQQV	11	Unmodified	_GSPTFTDRQQV_					0	0	0			REV__MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	REV__MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	618.3051147460938	2	618.304384	1234.59421	0.24739	0.00015296	0.16785	0.00010378	0.41524	0.00025674	618.3041302873655	18.032	0.57241	18.108	17.737	18.309	0.076334					16	10	2	0	0	0	0.69138	1	6090	6090		24.991	3.454	1	4078600	+		13073	10831	7733	7777	12544	12544					-0.0136988033864327
GSPTFTDRQQV	11	Unmodified	_GSPTFTDRQQV_					0	0	0			REV__MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	REV__MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	618.2855834960938	2	618.304384	1234.59421	0.24739	0.00015296	0.16785	0.00010378	0.41524	0.00025674	618.3041302873655	18.032	0.57241	18.108	17.737	18.309	0.076334					16	10	2	0	0	0	0.33458	1	6054	6054		24.991	24.991	1	4078600	+		13074	10831	7733	7777	12545	12545					-0.0136988033864327
GSPTFTDRQQV	11	Unmodified	_GSPTFTDRQQV_					0	0	0			REV__MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	REV__MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	618.304384	1234.59421	0.028442	1.7586E-05	-0.099075	-6.1258E-05	-0.070633	-4.3672E-05	618.3045101953338	18.726	0.25949	18.363	18.217	18.477	-0.36325	0.16546	-0.00025879	NaN	24.991	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2825400	+		13075	10831	7733	7777							-0.0136988033864327
GSPVLTARR	9	Unmodified	_GSPVLTARR_					0	0	0		ENST00000222248.3_1_19:17988859-17994831:+|nuORF	ENST00000222248.3_1_19:17988859-17994831:+|nuORF	ENST00000222248.3_1_19:17988859-17994831:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	956.563720703125	1	956.563589	955.556313	0.47036	0.00044993	0.35338	0.00033803	0.82374	0.00078796	956.5633564287549	50.381	0.62326	50.022	49.689	50.312	-0.35878					25	11	3	0	0	0	0.74917	1	18681	18681		1.8442	1.8442	1	11968000			13076	6755	7734	7778	12546	12546					0.0767569825721921
GSREGWKGP	9	Unmodified	_GSREGWKGP_					0	0	0		ENST00000607814.5_1_20:44520477-44520965:+|nuORF	ENST00000607814.5_1_20:44520477-44520965:+|nuORF	ENST00000607814.5_1_20:44520477-44520965:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	487.238525390625	2	487.246141	972.477728	0.051415	2.5052E-05	-0.35207	-0.00017155	-0.30066	-0.00014649	487.2462252195715	38.472	0.2599	38.17	38.092	38.352	-0.30137					7	4	2	0	0	0	0.59184	1	14245	14245		11.64	0.81637	1	3196100			13077	9122	7735	7779	12547	12547					-0.009611540478545066
GSSCCCCC	8	Unmodified	_GSSCCCCC_					0	0	0		ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	ENSG00000080709|ENST00000673685|KCNN2	MSMS	HCT116MG_D190212_S1	1	383.0774230957031	2	383.07828	764.142008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.01	1	12.01	11.51	12.51	0								0	0	0	0.8837	1	3829	3829		0	0	1				13078	1398	7736	7780	12548	12548					-0.2494977048046394
GSSGGHNG	8	Unmodified	_GSSGGHNG_					0	0	0		tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	tr|U7T422|U7T422_FUSNUPeptidyl-tRNAhydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pthPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	672.27001953125	1	672.269592	671.262316	0.76103	0.00051162	-0.20292	-0.00013641	0.55812	0.0003752	672.269600687348	33.633	0.3638	33.633	33.556	33.919	0					9	6	2	0	0	0	0.87635	1	12499	12499		0.69038	0.088878	1	10884000			13079	18614	7737	7781	12549	12549					-0.08646495512653019
GSSHCCGS	8	Unmodified	_GSSHCCGS_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1219787597656	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.507	1	10.507	10.007	11.007	0								0	0	0	0.8837	1	3230	3230		0.69038	0.69038	1		+		13080	13879	7738	7782	12550	12550					-0.15180617356338644
GSSHCCGS	8	Unmodified	_GSSHCCGS_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.12103271484375	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9051	1	1.8919	1.3919	2.3919	-0.013221								0	0	0	0.8837	1	617	617		0.69038	0.69038	1		+		13081	13879	7738	7782	12551	12551					-0.15180617356338644
GSSLKKRFKRR	11	Unmodified	_GSSLKKRFKRR_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MSMS	HCT116MG_D190212_S1	1	681.5230712890625	2	681.925669	1361.83679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.734	1	38.734	38.234	39.234	0								0	0	0	0.95954	1	14510	14510		1.3295	0	1				13082	4138	7739	7783	12552	12552					0.17034034247876662
GSSLLIMFI	9	Unmodified	_GSSLLIMFI_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A;REV__nc|ENSG00000183873|Q14524-5|SCN5A	REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	MSMS	HCT116MG_D190212_S4	4	490.77850341796875	2	490.777896	979.54124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.967	1	37.584	37.084	38.084	-0.38283								0	0	0	0.76781	1	13900	13900		8.5933	2.8329	1		+		13083	14051;13784	7740	7784	12553	12553					0.05065070345028744
GSSQARHVNHS	11	Unmodified	_GSSQARHVNHS_					0	0	0		nc|ENSG00000178287|Q6PDA7-4|SPAG11A;nc|ENSG00000178287|Q6PDA7-3|SPAG11A;nc|ENSG00000178287|Q08648|SPAG11B;nc|ENSG00000178287|Q6PDA7-2|SPAG11A;nc|ENSG00000178287|Q08648-3|SPAG11B;nc|ENSG00000178287|Q6PDA7|SPAG11A;ENSG00000178287|ENST00000642566|SPAG11A;ENSG00000164871|ENST00000398462|SPAG11B	nc|ENSG00000178287|Q6PDA7-4|SPAG11A	nc|ENSG00000178287|Q6PDA7-4|SPAG11A	MULTI-SECPEP	HCT116MG_D190212_S4	4	589.7938842773438	2	590.284317	1178.55408	0.43453	0.0002565	1.0664	0.00062949	1.5009	0.00088598	590.2849362616494	17.807	1.1924	17.632	16.703	17.896	-0.17501					44	22	3	0	0	0	0.34063	1	5947	5947		22.658	0	1	4740600			13084	4726	7741	7785	12554	12554					-0.028053822185484023
GSTATFEE	8	Unmodified	_GSTATFEE_					0	0	0			REV__MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant	REV__MAP1B|p.P1789Hfs*34|1|0.31|ENSG00000131711|chr5:72198718-72198718|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	421.1812744140625	2	421.18234	840.350128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.28	1	52.28	51.78	52.78	0								0	0	0	0.8837	1	19992	19992		5.2307	0.90143	1		+		13085	11967	7742	7786	12555	12555					-0.07643339432570428
GSTLYPVSNIP	11	Unmodified	_GSTLYPVSNIP_					0	0	0		RFX7|p.I1152*|2|0.36|ENSG00000181827|chr15:56093983-56093983|T/-|frameshift_variant;nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7	RFX7|p.I1152*|2|0.36|ENSG00000181827|chr15:56093983-56093983|T/-|frameshift_variant	RFX7|p.I1152*|2|0.36|ENSG00000181827|chr15:56093983-56093983|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	574.30517578125	2	574.303321	1146.59209	0.32755	0.00018811	3.4998	0.00201	3.8274	0.0021981	574.3057237318438	36.964	0.4149	36.964	36.731	37.146	0					12	7	3	0	0	0	0.61797	1	13829	13829		33.445	2.8084	1	11032000			13086	5643	7743	7787	12556	12556					0.024656909235773128
GSTPLGPSPV	10	Unmodified	_GSTPLGPSPV_					0	0	0			REV__nc|ENSG00000140836|Q15911-2|ZFHX3	REV__nc|ENSG00000140836|Q15911-2|ZFHX3	MSMS	HCT116MG_D190212_S4	4	456.2450866699219	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.079	1	27.747	27.247	28.247	-0.33138								0	0	0	0.83705	1	10081	10081		24.021	1.2843	1		+		13087	12312	7744	7788	12557	12557					0.017177921435290955
GSVGPRPGPQR	11	Unmodified	_GSVGPRPGPQR_					0	0	0			REV__ENSG00000204099|ENST00000407683|NEU4	REV__ENSG00000204099|ENST00000407683|NEU4	MSMS	HCT116MG_D190212_S4	4	554.305419921875	2	554.304521	1106.59449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.177	1	18.002	17.502	18.502	-0.17501								0	0	0	0.90489	1	6083	6083		19.362	5.4559	1		+		13088	14179	7745	7789	12558	12558					0.0454558417188764
GSVGPVGPA	9	Unmodified	_GSVGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	740.39404296875	1	740.39373	739.386454	0.57612	0.00042655	0.15125	0.00011198	0.72737	0.00053854	740.3937067940752	28.981	0.52057	28.76	28.577	29.098	-0.22195					15	9	2	0	0	0	0.023611	1	10497	10497		92.822	10.958	1	13070000			13089	4715	7746	7790	12559	12559					0.006335822548066972
GSVGPVGPA	9	Unmodified	_GSVGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	740.393798828125	1	740.39373	739.386454	0.82189	0.00060852	-0.068273	-5.0549E-05	0.75361	0.00055797	740.3935836092834	29.099	0.57124	28.758	28.574	29.145	-0.34059					19	10	3	0	0	0	0.023611	1	10479	10479		92.822	10.958	1	10232000			13090	4715	7746	7790	12560	12560					0.006335822548066972
GSVGPVGPA	9	Unmodified	_GSVGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	740.39453125	1	740.39373	739.386454	0.8099	0.00059965	0.21562	0.00015965	1.0255	0.00075929	740.3939481579035	29.698	0.46798	29.349	29.189	29.657	-0.34921					11	8	2	0	0	0	0.0066639	1	10735	10735		123.1	16.251	1	3859900			13091	4715	7746	7790	12561	12561					0.006335822548066972
GSVGSASSMKS	11	Unmodified	_GSVGSASSMKS_					0	0	0		RABL3|p.V77M|1|0.3|ENSG00000144840|chr3:120709819-120709819|C/T|missense_variant	RABL3|p.V77M|1|0.3|ENSG00000144840|chr3:120709819-120709819|C/T|missense_variant	RABL3|p.V77M|1|0.3|ENSG00000144840|chr3:120709819-120709819|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	499.2427673339844	2	499.234581	996.45461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.667	1	17.493	16.993	17.993	-0.1738								0	0	0	0.91257	1	5877	5877		18.373	1.4308	1				13092	9796	7747	7791	12562	12562					-0.043759609474932404
GSVNKAGY	8	Unmodified	_GSVNKAGY_					0	0	0		IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant;IGFN1|p.R1136Gfs*8|2|0.4|ENSG00000163395|chr1:201226110-201226110|C/-|frameshift_variant;ENSG00000163395|ENST00000335211|IGFN1	IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant	IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	398.20294189453125	2	398.20341	794.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.285	1	27.116	26.616	27.616	-0.16933								0	0	0	0.79325	1	9826	9826		23.148	2.6948	1				13093	4597	7748	7792	12563	12563					-0.013153192335266795
GSVPRRLE	8	Unmodified	_GSVPRRLE_					0	0	0			REV__SPTY2D1|p.P485Rfs*12|1|0.3|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	REV__SPTY2D1|p.P485Rfs*12|1|0.3|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	457.26416015625	2	457.264333	912.514114	0.19255	8.8049E-05	0.062839	2.8734E-05	0.25539	0.00011678	457.2642994365361	44.652	0.71145	44.279	43.676	44.387	-0.37326					25	19	2	0	0	0	0.81821	1	16319	16319		9.3474	0	1	9076700	+		13094	13628	7749	7793	12564	12564					0.05435722848858404
GSVYVAGK	8	Unmodified	_GSVYVAGK_					0	0	0			REV__ENST00000424793.1_1_10:45302350-45302581:+|nuORF	REV__ENST00000424793.1_1_10:45302350-45302581:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	391.4830017089844	2	390.716153	779.417754	0.16156	6.3123E-05	0.30868	0.00012061	0.47024	0.00018373	390.71621825288935	25.842	0.20732	25.473	25.343	25.55	-0.36914					5	3	2	0	0	0	0.32122	1	9284	9284		4.3292	0	1	6127700	+		13095	15539	7750	7794	12565	12565					0.0192215528890074
GTAGPAVAA	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GTAGPAVAA_					1	0	0			REV__ENST00000261918.8_1_15:74726258-74726387:-|nuORF	REV__ENST00000261918.8_1_15:74726258-74726387:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	756.388916015625	1	756.388645	755.381368	0.54191	0.00040989	0.31994	0.000242	0.86185	0.00065189	756.3887295860314	23.409	0.36467	23.369	23.239	23.604	-0.03968					9	6	2	0	0	0	0.14972	1	8292	8292		48.346	7.8973	1	2975700	+		13096	14631	7751	7795	12566	12566					-0.006107216078248712
GTAPSGAHTEP	11	Unmodified	_GTAPSGAHTEP_					0	0	0		nc|ENSG00000009765|Q6PHW0-7|IYD;nc|ENSG00000009765|Q6PHW0-3|IYD;nc|ENSG00000009765|Q6PHW0-6|IYD;nc|ENSG00000009765|Q6PHW0-5|IYD;ENSG00000009765|ENST00000344419|IYD;nc|ENSG00000009765|Q6PHW0-4|IYD	nc|ENSG00000009765|Q6PHW0-7|IYD	nc|ENSG00000009765|Q6PHW0-7|IYD	MULTI-MSMS	HCT116MG_D190212_S3	3	512.73828125	2	512.738345	1023.46214	0.10947	5.613E-05	-0.21539	-0.00011044	-0.10592	-5.4307E-05	512.7383613118774	16.282	1.2484	16.367	15.769	17.017	0.085424					47	23	3	0	0	0	0.62391	1	5267	5267		32.786	2.9451	1	5986800			13097	871	7752	7796	12567	12567					-0.048654853555717636
GTASAQQQ	8	Unmodified	_GTASAQQQ_					0	0	0			REV__ENST00000480428.1_1_1:77333351-77336964:+|nuORF	REV__ENST00000480428.1_1_1:77333351-77336964:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	790.8414916992188	1	790.368972	789.361695	0.41505	0.00032804	0.27886	0.0002204	0.69391	0.00054844	790.3689655821381	38.79	0.62355	38.79	38.332	38.955	0					16	11	3	0	0	0	0.2988	1	14597	14597		6.7232	0	1	34644000	+		13098	11607	7753	7797	12568	12568					-0.04141097618571621
GTATKHLTY	9	Unmodified	_GTATKHLTY_					0	0	0		TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant	TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	496.2645263671875	2	496.263999	990.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.816	1	22.431	21.931	22.931	-0.3852								0	0	0	0.058768	1	8102	8102		67.838	37.613	1				13099	1348	7754	7798	12569	12569					0.017808834091283643
GTDDGKVGLY	10	Unmodified	_GTDDGKVGLY_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S1	1	512.7510986328125	2	512.750921	1023.48729	0.21515	0.00011032	0.3379	0.00017326	0.55305	0.00028358	512.7509868591482	32.144	0.26045	32.144	31.961	32.222	0					7	4	2	0	0	0	0.61405	1	11881	11881		27.223	3.4335	1	4994600			13100	1423	7755	7799	12570	12570					-0.023514305529943158
GTDDGKVGLY	10	Unmodified	_GTDDGKVGLY_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7510375976562	2	512.750921	1023.48729	0.18252	9.3586E-05	0.2328	0.00011937	0.41531	0.00021295	512.7509254961242	32.302	0.41632	32.072	31.942	32.359	-0.23009					10	7	2	0	0	0	0.029378	1	11975	11975		103.42	36.963	1	20902000			13101	1423	7755	7799	12571	12571					-0.023514305529943158
GTDDGKVGLY	10	Unmodified	_GTDDGKVGLY_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7507934570312	2	512.750921	1023.48729	0.20969	0.00010752	-0.28766	-0.0001475	-0.07797	-3.9979E-05	512.7508498759246	32.482	0.26067	32.204	32.046	32.306	-0.27841					11	4	3	0	0	0	0.014847	1	11905	11905		132.38	55.555	1	8854000			13102	1423	7755	7799	12572	12572					-0.023514305529943158
GTDDGRLLEY	10	Unmodified	_GTDDGRLLEY_					0	0	0		APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant;nc|ENSG00000101474|Q9HDC9-2|APMAP;APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant;ENSG00000101474|ENST00000217456|APMAP	APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant	APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	569.7727661132812	2	569.772385	1137.53022	0.14696	8.3735E-05	-0.13917	-7.9295E-05	0.0077938	4.4407E-06	569.7724244688279	39.735	0.20767	39.735	39.605	39.813	0					5	3	2	0	0	0	0.053614	1	14938	14938		84.522	31.205	1	15977000			13103	160	7756	7800	12573	12573					-0.03304660495564349
GTDDGRLLEY	10	Unmodified	_GTDDGRLLEY_					0	0	0		APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant;nc|ENSG00000101474|Q9HDC9-2|APMAP;APMAP|p.F346Lfs*9|1|0.19|ENSG00000101474|chr20:24968895-24968895|A/-|frameshift_variant;ENSG00000101474|ENST00000217456|APMAP	APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant	APMAP|p.P259Rfs*31|1|0.16|ENSG00000101474|chr20:24969598-24969598|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.77197265625	2	569.772385	1137.53022	0.18745	0.0001068	-0.52422	-0.00029869	-0.33677	-0.00019188	569.77195746956	39.786	0.30909	39.713	39.533	39.842	-0.07288					12	5	3	0	0	0	0.31077	1	15010	15010		49.527	3.7874	1	40116000			13104	160	7756	7800	12574	12574					-0.03304660495564349
GTDELRLLY	9	Unmodified	_GTDELRLLY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MSMS	HCT116MG_D190212_S1	1	540.2904052734375	2	540.290214	1078.56587	0.28661	0.00015485	-0.1136	-6.1374E-05	0.17301	9.3478E-05	540.7918166601031	50.73	0.25854	50.73	50.574	50.833	0					7	4	2	0	0	0	0.0042464	1	19373	19373		147.06	78.978	1	15423000			13105	786	7757	7801	12575	12575					0.02973421752108152
GTDELRLLY	9	Unmodified	_GTDELRLLY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MSMS	HCT116MG_D190212_S2	2	540.2905883789062	2	540.290214	1078.56587	0.48471	0.00026188	0.32417	0.00017515	0.80888	0.00043703	540.290288042761	50.859	0.30945	50.68	50.5	50.81	-0.17868					12	5	3	0	0	0	0.0045841	1	19502	19502		142.08	76.845	1	60487000			13106	786	7757	7801	12576	12576					0.02973421752108152
GTDELRLLY	9	Unmodified	_GTDELRLLY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MSMS	HCT116MG_D190212_S3	3	540.29052734375	2	540.290214	1078.56587	0.43113	0.00023294	-0.19811	-0.00010704	0.23303	0.0001259	540.2902240192134	51.076	0.31375	50.764	50.595	50.909	-0.31226					7	5	2	0	0	0	0.034046	1	19308	19308		82.529	23.85	1	4290000			13107	786	7757	7801	12577	12577					0.02973421752108152
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	HCT116MG_D190212_S1	1	551.7440185546875	2	551.743628	1101.4727	0.63713	0.00035153	-0.10293	-5.679E-05	0.5342	0.00029474	551.7435216616035	29.451	0.46829	29.451	29.269	29.737	0					23	8	4	0	0	0	0.042984	1	10750	10750		114.5	56.775	1	123270000			13108	2123	7758	7802	12578	12578					-0.07397502701132908
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	HCT116MG_D190212_S1	1	1102.4813232421875	1	1102.47998	1101.4727	0.73891	0.00081464	0.96094	0.0010594	1.6999	0.0018741	1102.4809289629447	29.451	0.26027	29.451	29.321	29.581	0					7	4	2	0	0	0	0.024101	1	10780	10780		139.78	103.65	1	7792700			13109	2123	7758	7802	12579	12579					-0.07397502701132908
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	HCT116MG_D190212_S2	2	551.743896484375	2	551.743628	1101.4727	0.41253	0.00022761	0.1267	6.9906E-05	0.53923	0.00029752	551.7436709868468	29.822	0.568	29.521	29.34	29.908	-0.30095					26	10	4	0	0	0	0.042984	1	10923	10923		114.5	60.664	1	516820000			13110	2123	7758	7802	12580	12580					-0.07397502701132908
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	HCT116MG_D190212_S2	2	1102.4810791015625	1	1102.47998	1101.4727	0.70495	0.0007772	-0.036315	-4.0037E-05	0.66864	0.00073716	1102.479835048284	29.818	0.31015	29.517	29.34	29.65	-0.30095					11	5	3	0	0	0	0.021997	1	10940	10940		143.21	97.514	1	92189000			13111	2123	7758	7802	12581	12581					-0.07397502701132908
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	HCT116MG_D190212_S3	3	551.7440795898438	2	551.743628	1101.4727	0.58174	0.00032097	-0.08034	-4.4327E-05	0.5014	0.00027664	551.7435361588558	29.925	0.53	29.689	29.5	30.03	-0.23655					23	9	4	0	0	0	0.089898	1	10871	10871		94.909	45.354	1	115460000			13112	2123	7758	7802	12582	12582					-0.07397502701132908
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	HCT116MG_D190212_S3	3	1102.4796142578125	1	1102.47998	1101.4727	0.56058	0.00061803	-0.042286	-4.6619E-05	0.5183	0.00057141	1102.4796985935593	29.925	0.26649	29.689	29.555	29.822	-0.23655					7	4	2	0	0	0	0.10912	1	10917	10917		91.085	69.338	1	5604400			13113	2123	7758	7802	12583	12583					-0.07397502701132908
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	HCT116MG_D190212_S4	4	552.2452392578125	2	551.743628	1101.4727	0.47402	0.00026154	-0.015058	-8.3084E-06	0.45896	0.00025323	551.743531586127	30.08	0.36402	29.723	29.545	29.909	-0.3571					16	6	4	0	0	0	0.068758	1	10876	10876		91.085	41.531	1	24896000			13114	2123	7758	7802	12584	12584					-0.07397502701132908
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	HCT116MG_D190212_S1	1	499.73822021484375	2	499.738148	997.461744	0.45319	0.00022648	-0.25332	-0.00012659	0.19987	9.9882E-05	499.73808019742285	27.93	1.1027	27.93	27.748	28.851	0					48	20	5	0	0	0	2.2594E-08	1	10135	10135		230.2	185.8	1	1138700000			13115	2634	7759	7803	12585	12585					-0.0370886028475752
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	HCT116MG_D190212_S1	1	998.4699096679688	1	998.46902	997.461744	0.78297	0.00078177	-0.033916	-3.3864E-05	0.74905	0.0007479	998.4688503293806	27.966	0.26036	27.966	27.8	28.06	0					11	4	3	0	0	0	0.031005	1	10159	10159		85.357	62.62	1	27411000			13116	2634	7759	7803	12586	12586					-0.0370886028475752
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	HCT116MG_D190212_S2	2	499.7381591796875	2	499.738148	997.461744	0.3868	0.0001933	-0.15692	-7.8419E-05	0.22988	0.00011488	499.7381250479572	28.437	0.66637	28.107	27.926	28.592	-0.32987					36	12	5	0	0	0	2.2594E-08	3	10373	10364;10366;10373		230.2	185.8	1	2654400000			13117	2634	7759	7803	12587;12588;12589	12589					-0.0370886028475752
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	HCT116MG_D190212_S2	2	998.4691162109375	1	998.46902	997.461744	0.50677	0.000506	0.186	0.00018571	0.69277	0.00069171	998.469073543663	28.437	0.41222	28.107	27.926	28.338	-0.32987					18	7	4	0	0	0	0.019399	1	10375	10375		97.075	68.588	1	240500000			13118	2634	7759	7803	12590	12590					-0.0370886028475752
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	HCT116MG_D190212_S3	3	499.73828125	2	499.738148	997.461744	0.42174	0.00021076	-0.019557	-9.7734E-06	0.40219	0.00020099	499.7380675621748	28.357	0.67772	28.151	27.916	28.593	-0.20593					27	12	4	0	0	0	5.2414E-05	2	10259	10259;10333		207.55	163.69	1	163680000			13119	2634	7759	7803	12591;12592	12591					-0.0370886028475752
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	HCT116MG_D190212_S3	3	998.4697265625	1	998.46902	997.461744	0.52644	0.00052564	0.12924	0.00012904	0.65568	0.00065468	998.4691367009298	28.357	0.20885	28.151	28.02	28.229	-0.20593					6	3	2	0	0	0	0.058138	1	10286	10286		70.716	48.969	1	4748900			13120	2634	7759	7803	12593	12593					-0.0370886028475752
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	HCT116MG_D190212_S4	4	499.7383728027344	2	499.738148	997.461744	0.37358	0.00018669	-0.043174	-2.1576E-05	0.3304	0.00016511	499.73813916044486	28.582	0.31141	28.251	28.116	28.428	-0.33138					14	5	4	0	0	0	0.0034366	1	10286	10286		179.23	143.19	1	16355000			13121	2634	7759	7803	12594	12594					-0.0370886028475752
GTDGQGGTFRY	11	Unmodified	_GTDGQGGTFRY_					0	0	0		ENST00000487931.1_1_1:78444877-78481928:+|nuORF;DNAJB4|p.N303Ifs*9|1|0.17|ENSG00000162616|chr1:78016136-78016136|A/-|frameshift_variant;ENSG00000162616|ENST00000370763|DNAJB4	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	579.7628784179688	2	579.762352	1157.51015	0.64451	0.00037366	-0.17519	-0.00010157	0.46931	0.00027209	579.762311102703	31.154	0.31261	31.154	30.971	31.284	0					13	5	3	0	0	0	7.6425E-11	1	11443	11443		214.05	141.08	1	20914000			13122	712	7760	7804	12595	12595					-0.062304114354901685
GTDGQGGTFRY	11	Unmodified	_GTDGQGGTFRY_					0	0	0		ENST00000487931.1_1_1:78444877-78481928:+|nuORF;DNAJB4|p.N303Ifs*9|1|0.17|ENSG00000162616|chr1:78016136-78016136|A/-|frameshift_variant;ENSG00000162616|ENST00000370763|DNAJB4	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	579.7626342773438	2	579.762352	1157.51015	0.62267	0.000361	-0.15089	-8.748E-05	0.47178	0.00027352	579.762191909693	31.341	0.46548	31.092	30.888	31.354	-0.24883					17	8	3	0	0	0	1.0132E-15	1	11552	11552		230.41	157.44	1	70565000			13123	712	7760	7804	12596	12596					-0.062304114354901685
GTDGQGGTFRY	11	Unmodified	_GTDGQGGTFRY_					0	0	0		ENST00000487931.1_1_1:78444877-78481928:+|nuORF;DNAJB4|p.N303Ifs*9|1|0.17|ENSG00000162616|chr1:78016136-78016136|A/-|frameshift_variant;ENSG00000162616|ENST00000370763|DNAJB4	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	579.76318359375	2	579.762352	1157.51015	0.40466	0.00023461	-0.27751	-0.00016089	0.12715	7.3715E-05	579.7623871505095	31.531	0.20888	31.261	31.117	31.326	-0.27027					7	3	3	0	0	0	0.55933	1	11530	11530		39.95	13.066	1	5234600			13124	712	7760	7804	12597	12597					-0.062304114354901685
GTDLSIFKY	9	Unmodified	_GTDLSIFKY_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S1	1	522.2743530273438	2	522.274032	1042.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.791	1	50.791	50.291	51.291	0								0	0	0	0.32687	1	19389	19389		38.176	9.094	1				13125	803	7761	7805	12598	12598					0.01394634349117041
GTDLSIFKY	9	Unmodified	_GTDLSIFKY_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S2	2	522.2737426757812	2	522.274032	1042.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.902	1	50.724	50.224	51.224	-0.17868								0	0	0	5.6938E-05	1	19518	19518		142.08	73.999	1				13126	803	7761	7805	12599	12599					0.01394634349117041
GTDMDYCL	8	Unmodified	_GTDMDYCL_					0	0	0			REV__MAP3K3|p.V382M|1|0.58|ENSG00000198909|chr17:63690344-63690344|G/A|missense_variant	REV__MAP3K3|p.V382M|1|0.58|ENSG00000198909|chr17:63690344-63690344|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	459.1722717285156	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.767	1	4.7895	4.2895	5.2895	0.022513								0	0	0	0.8837	1	1436	1436		0.79363	0	1		+		13127	17005	7762	7806	12600	12600					-0.1308575503934435
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S2	2	1019.5415649414062	1	1019.54079	1018.53351	0.75231	0.00076701	-0.11745	-0.00011974	0.63487	0.00064727	1019.5404588642346	54.211	0.41053	54.022	53.842	54.252	-0.1894					18	7	3	0	0	0	0.016701	1	20854	20854		99.799	31.718	1	86835000			13128	5292	7763	7807	12601	12601					0.024986343491036678
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S3	3	1019.5404052734375	1	1019.54079	1018.53351	0.57649	0.00058776	0.10515	0.0001072	0.68164	0.00069496	1019.5406431204299	54.357	0.47057	54.061	53.877	54.347	-0.29587					20	8	4	0	0	0	0.010834	1	20593	20593		111.29	47.051	1	19674000			13129	5292	7763	7807	12602	12602					0.024986343491036678
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S4	4	1019.541748046875	1	1019.54079	1018.53351	0.68968	0.00070316	0.14282	0.00014561	0.83251	0.00084878	1019.5408044837948	54.385	0.31272	54.062	53.932	54.244	-0.32349					12	5	3	0	0	0	0.027442	1	20339	20339		88.954	26.381	1	6311500			13130	5292	7763	7807	12603	12603					0.024986343491036678
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1019.54079	1018.53351	0.9728	0.00099181	-1.1868	-0.00121	-0.21404	-0.00021822	1019.5392161146459	53.95	0.25481	53.95	53.822	54.077	0	-0.073938	-0.001198	NaN	111.29	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7037800			13131	5292	7763	7807							0.024986343491036678
GTDPTPQHY	9	Unmodified	_GTDPTPQHY_					0	0	0		ENST00000521361.5_1_6:112040873-112041254:-|nuORF;nc|ENSG00000010810|P06241-3|FYN;FYN|p.D506Gfs*3|1|0.19|ENSG00000010810|chr6:111661838-111661839|-/T|frameshift_variant;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	507.69525146484375	2	508.227613	1014.44067	0.43502	0.00022109	-0.16201	-8.2339E-05	0.27301	0.00013875	508.22763419466156	21.214	0.26557	21.214	21.067	21.333	0					6	4	2	0	0	0	0.21474	1	7437	7437		22.736	1.8651	1	1983900			13132	883	7764	7808	12604	12604					-0.06596870384282738
GTDPTPQHY	9	Unmodified	_GTDPTPQHY_					0	0	0		ENST00000521361.5_1_6:112040873-112041254:-|nuORF;nc|ENSG00000010810|P06241-3|FYN;FYN|p.D506Gfs*3|1|0.19|ENSG00000010810|chr6:111661838-111661839|-/T|frameshift_variant;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.227294921875	2	508.227613	1014.44067	0.2685	0.00013646	-0.24047	-0.00012221	0.028029	1.4245E-05	508.2274166210237	21.668	0.41582	21.283	21.115	21.531	-0.38503					10	7	2	0	0	0	0.24895	1	7654	7654		36.127	17.981	1	12581000			13133	883	7764	7808	12605	12605					-0.06596870384282738
GTDPTPQHY	9	Unmodified	_GTDPTPQHY_					0	0	0		ENST00000521361.5_1_6:112040873-112041254:-|nuORF;nc|ENSG00000010810|P06241-3|FYN;FYN|p.D506Gfs*3|1|0.19|ENSG00000010810|chr6:111661838-111661839|-/T|frameshift_variant;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	ENST00000521361.5_1_6:112040873-112041254:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	507.6953430175781	2	508.227613	1014.44067	0.088389	4.4922E-05	1.0442	0.00053071	1.1326	0.00057564	508.2279946427941	21.145	0.26016	21.172	20.968	21.228	0.027514					8	4	2	0	0	0	0.21474	1	7330	7330		17.113	11.381	1	1927100			13134	883	7764	7808	12606	12606					-0.06596870384282738
GTDRNHNRY	9	Unmodified	_GTDRNHNRY_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	566.7660522460938	2	566.76576	1131.51697	0.44038	0.00024959	-0.046181	-2.6174E-05	0.3942	0.00022342	566.7657340280527	14.52	0.25991	14.52	14.442	14.702	0					7	4	3	0	0	0	0.5825	1	4782	4782		12.241	3.6474	1	12396000			13135	253	7765	7809	12607	12607					-0.043530537642936906
GTDRNHNRY	9	Unmodified	_GTDRNHNRY_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	378.1794738769531	3	378.179599	1131.51697	-0.039169	-1.4813E-05	-0.13933	-5.2692E-05	-0.1785	-6.7505E-05	378.179497288806	14.52	0.15594	14.52	14.442	14.598	0					6	2	3	0	0	0	0.43552	1	4784	4784		20.581	11.198	1	9514000			13136	253	7765	7809	12608	12608					-0.043530537642936906
GTDTGVVQY	9	Unmodified	_GTDTGVVQY_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;WDR19|p.N1166Mfs*5|1|0.21|ENSG00000157796|chr4:39272989-39272989|A/-|frameshift_variant;ENSG00000157796|ENST00000399820|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	939.4428100585938	1	939.441802	938.434526	0.65226	0.00061276	-0.1562	-0.00014674	0.49606	0.00046602	939.4415616490642	32.667	0.26091	32.456	32.325	32.586	-0.21135					6	4	2	0	0	0	0.007119	1	12122	12122		120.45	62.979	1	16679000			13137	4344	7766	7810	12609	12609					-0.03715388615808024
GTDVAGGYSY	10	Unmodified	_GTDVAGGYSY_					0	0	0		nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA	nc|ENSG00000119125|Q9Y2T3-2|GDA	nc|ENSG00000119125|Q9Y2T3-2|GDA	MULTI-MSMS	HCT116MG_D190212_S1	1	989.422119140625	1	989.421067	988.413791	0.75768	0.00074967	0.1071	0.00010597	0.86479	0.00085564	989.4210120605794	32.907	0.29476	32.907	32.794	33.089	0					11	5	3	0	0	0	0.042873	1	12167	12167		92.491	23.387	1	22533000			13138	2626	7767	7811	12610	12610					-0.08087978995467893
GTDVAGGYSY	10	Unmodified	_GTDVAGGYSY_					0	0	0		nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA	nc|ENSG00000119125|Q9Y2T3-2|GDA	nc|ENSG00000119125|Q9Y2T3-2|GDA	MULTI-MSMS	HCT116MG_D190212_S2	2	989.4229125976562	1	989.421067	988.413791	1.1111	0.0010993	0.59012	0.00058388	1.7012	0.0016832	989.4215251051673	33.082	0.26093	32.871	32.739	33	-0.21135					6	4	2	0	0	0	0.029196	1	12289	12289		103.75	34.643	1	39127000			13139	2626	7767	7811	12611	12611					-0.08087978995467893
GTDVPDPKSA	10	Unmodified	_GTDVPDPKSA_					0	0	0			REV__ENST00000592404.5_1_19:28288763-28290260:+|nuORF	REV__ENST00000592404.5_1_19:28288763-28290260:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7432556152344	2	493.743096	985.47164	0.18119	8.9464E-05	0.26402	0.00013036	0.44522	0.00021982	493.74311850992586	14.64	0.99031	14.32	14.088	15.079	-0.31952					48	18	4	0	0	0	0.17574	1	4792	4792		61.602	7.7691	1	19380000	+		13140	16699	7768	7812	12612	12612					-0.02167717070051367
GTEFGGSIY	9	Unmodified	_GTEFGGSIY_					0	0	0		nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2;ENST00000489906.5_1_5:133308464-133311792:-|nuORF;ENSG00000213585|ENST00000265333|VDAC1;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3	nc|ENSG00000165637|P45880-2|VDAC2	nc|ENSG00000165637|P45880-2|VDAC2	MULTI-MSMS	HCT116MG_D190212_S2	2	930.4209594726562	1	930.420339	929.413062	1.0194	0.0009485	-0.10254	-9.5406E-05	0.91689	0.0008531	930.4203047732495	43.522	0.36061	43.449	43.252	43.612	-0.073376					14	6	3	0	0	0	0.043314	1	16522	16522		77.984	17.595	1	48163000			13141	4786	7769	7813	12613	12613					-0.05446773644530367
GTEIVTESEY	10	Unmodified	_GTEIVTESEY_					0	0	0		ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant;ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant;nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711	ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	564.25927734375	2	564.258776	1126.503	0.37727	0.00021288	0.41705	0.00023533	0.79432	0.0004482	564.2589633877188	53.954	0.25745	53.764	53.584	53.842	-0.1894					9	4	3	0	0	0	0.4604	1	20765	20765		37.974	1.847	1	46679000			13142	3977	7770	7814	12614	12614					-0.05519188826588106
GTEIVTESEY	10	Unmodified	_GTEIVTESEY_					0	0	0		ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant;ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant;nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711	ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	564.258776	1126.503	0.48557	0.00027399	0.10727	6.0527E-05	0.59283	0.00033451	564.2585877207708	53.694	0.15535	53.694	53.565	53.72	0	-0.035143	-0.00030969	NaN	37.974	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10152000			13143	3977	7770	7814							-0.05519188826588106
GTENTNAP	8	Unmodified	_GTENTNAP_					0	0	0			REV__tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	REV__tr|U7SH45|U7SH45_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02178PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	402.1797180175781	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9749	1	6.9749	6.4749	7.4749	0								0	0	0	0.8837	1	2107	2107		0.69038	0	1		+		13144	17674	7771	7815	12615	12615					-0.06336803855481321
GTEPARSEAP	10	Unmodified	_GTEPARSEAP_					0	0	0			REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	507.7464904785156	2	507.74617	1013.47779	0.2545	0.00012922	0.023057	1.1707E-05	0.27755	0.00014093	507.74611436948993	15.216	1.1472	14.889	14.654	15.801	-0.32684					45	21	3	0	0	0	0.45751	1	5250	5250		38.176	5.3899	1	51089000	+		13145	13516	7772	7816	12616	12616					-0.0284119883853009
GTESIEEEEKM	11	Unmodified	_GTESIEEEEKM_					0	0	0			REV__ZBED2|p.R177Gfs*15|1|0.26|ENSG00000177494|chr3:111593673-111593673|T/-|frameshift_variant	REV__ZBED2|p.R177Gfs*15|1|0.26|ENSG00000177494|chr3:111593673-111593673|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	641.2777099609375	2	641.279383	1280.54421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.973	1	26.621	26.121	27.121	-0.35254								0	0	0	0.88801	1	9780	9780		21.537	8.4945	1		+		13146	13574	7773	7817	12617	12617					-0.0848379584945178
GTGLREILKA	10	Unmodified	_GTGLREILKA_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;ENST00000471217.5_1_10:93716996-93718971:+|nuORF;BTAF1|p.Q569Sfs*23|1|0.36|ENSG00000095564|chr10:91980503-91980503|T/-|frameshift_variant	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	HCT116MG_D190212_S2	2	529.8035888671875	2	529.321848	1056.62914	0.75744	0.00040093	-0.030564	-1.6178E-05	0.72687	0.00038475	529.321844882716	33.341	0.36064	33.148	32.966	33.327	-0.19297					16	6	4	0	0	0	0.63157	1	12420	12420		29.841	0	1	201410000			13147	1609	7774	7818	12618	12618					0.10309407260001535
GTGRACAH	8	Unmodified	_GTGRACAH_					0	0	0			REV__ENST00000483652.5_1_22:50319209-50319452:+|nuORF	REV__ENST00000483652.5_1_22:50319209-50319452:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	772.3509521484375	1	772.351882	771.344606	0.57991	0.0004479	-0.85617	-0.00066127	-0.27626	-0.00021337	772.3511917366455	36.888	0.31205	36.587	36.457	36.769	-0.30113					9	5	2	0	0	0	0.85329	1	13649	13649		4.756	2.1785	1	8163700	+		13148	15976	7775	7819	12619	12619					-0.0502129670536533
GTGRACAH	8	Unmodified	_GTGRACAH_					0	0	0			REV__ENST00000483652.5_1_22:50319209-50319452:+|nuORF	REV__ENST00000483652.5_1_22:50319209-50319452:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	772.3522338867188	1	772.351882	771.344606	0.83543	0.00064525	-1.034	-0.00079863	-0.19859	-0.00015338	772.3511451745468	37.002	0.28978	36.617	36.435	36.725	-0.38486					7	5	2	0	0	0	0.86858	1	13589	13589		2.0598	1.2661	1	2761400	+		13149	15976	7775	7819	12620	12620					-0.0502129670536533
GTGRACAH	8	Unmodified	_GTGRACAH_					0	0	0			REV__ENST00000483652.5_1_22:50319209-50319452:+|nuORF	REV__ENST00000483652.5_1_22:50319209-50319452:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	772.351882	771.344606	0.57991	0.0004479	-0.85617	-0.00066127	-0.27626	-0.00021337	772.3511917366455	36.888	0.31205	36.587	36.457	36.769	-0.30113	-0.014855	4.7401E-05	NaN	4.756	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8163700	+		13150	15976	7775	7819							-0.0502129670536533
GTGRACAH	8	Unmodified	_GTGRACAH_					0	0	0			REV__ENST00000483652.5_1_22:50319209-50319452:+|nuORF	REV__ENST00000483652.5_1_22:50319209-50319452:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	772.351882	771.344606	0.83543	0.00064525	-1.034	-0.00079863	-0.19859	-0.00015338	772.3511451745468	37.002	0.28978	36.617	36.435	36.725	-0.38486	0.014855	-8.9964E-05	NaN	4.756	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2761400	+		13151	15976	7775	7819							-0.0502129670536533
GTHLWGDSD	9	Unmodified	_GTHLWGDSD_					0	0	0			REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	MSMS	HCT116MG_D190212_S2	2	494.2125244140625	2	494.211963	986.409374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.933	1	10.66	10.16	11.16	-0.27365								0	0	0	0.76902	1	3492	3492		4.3292	0	1		+		13152	13003	7776	7820	12621	12621					-0.08437443418370094
GTHSNHTAASS	11	Unmodified	_GTHSNHTAASS_					0	0	0			REV__ENSG00000127515|ENST00000641129|OR7A10	REV__ENSG00000127515|ENST00000641129|OR7A10	MSMS	HCT116MG_D190212_S4	4	535.2376098632812	2	535.236501	1068.45845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.603	1	41.227	40.727	41.727	-0.37637								0	0	0	0.93607	1	15269	15269		13.615	0.10698	1		+		13153	11858	7777	7821	12622	12622					-0.07304155129418177
GTIFAVYLQPT	11	Unmodified	_GTIFAVYLQPT_					0	0	0		ENSG00000094661|ENST00000641398|OR1I1	ENSG00000094661|ENST00000641398|OR1I1	ENSG00000094661|ENST00000641398|OR1I1	MSMS	HCT116MG_D190212_S3	3	605.329833984375	2	605.329339	1208.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.248	1	47.932	47.432	48.432	-0.31596								0	0	0	0.92235	1	18141	18141		17.113	0.96379	1				13154	1597	7778	7822	12623	12623					0.04814854337337238
GTKKDPPSAA	10	Unmodified	_GTKKDPPSAA_					0	0	0		ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1;PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	MSMS	HCT116MG_D190212_S1	1	486.26177978515625	2	486.261456	970.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.999	1	21.999	21.499	22.499	0								0	0	0	0.23995	1	7767	7767		65.235	0	1				13155	5535	7779	7823	12624	12624					0.021925795465108422
GTLDFRCFC	9	Unmodified	_GTLDFRCFC_					0	0	0			REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	531.2305297851562	2	531.230787	1060.44702	0.61443	0.0003264	-0.15415	-8.1888E-05	0.46028	0.00024452	531.2307152093641	51.902	0.25772	51.719	51.629	51.887	-0.18368					7	4	2	0	0	0	0.68648	1	19954	19954		6.2058	1.8765	1	10893000	+		13156	12038	7780	7824	12625	12625					-0.08078391748767899
GTLMSSFLMAP	11	Unmodified	_GTLMSSFLMAP_					0	0	0			REV__ENSG00000009830|ENST00000261534|POMT2	REV__ENSG00000009830|ENST00000261534|POMT2	MSMS	HCT116MG_D190212_S3	3	577.7847900390625	2	577.782853	1153.55115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.952	1	25.824	25.324	26.324	-0.12795								0	0	0	0.9387	1	9289	9289		12.241	1.4167	1		+		13157	10509	7781	7825	12626	12626					-0.01948109711906909
GTNCPHWH	8	Unmodified	_GTNCPHWH_					0	0	0		ENST00000333017.6_1_2:99863168-99871557:-|nuORF	ENST00000333017.6_1_2:99863168-99871557:-|nuORF	ENST00000333017.6_1_2:99863168-99871557:-|nuORF	MSMS	HCT116MG_D190212_S4	4	476.1983947753906	2	476.198136	950.381719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.069	1	14.908	14.408	15.408	-0.16089								0	0	0	0.8837	1	4827	4827		2.5775	0	1				13158	7173	7782	7826	12627	12627					-0.09545625159614701
GTNIIKHRTLT	11	Unmodified	_GTNIIKHRTLT_					0	0	0			REV__ZNF708|p.H246N|1|0.53|ENSG00000182141|chr19:21294230-21294230|G/T|missense_variant	REV__ZNF708|p.H246N|1|0.53|ENSG00000182141|chr19:21294230-21294230|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	627.2334594726562	2	627.369861	1252.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.786	1	45.475	44.975	45.975	-0.31094								0	0	0	0.95343	1	17153	17153		4.5289	0.33936	1		+		13159	18087	7783	7827	12628	12628					0.10891555100079131
GTPDGQPQPTQ	11	Unmodified	_GTPDGQPQPTQ_					0	0	0		ENSG00000102996|ENST00000219271|MMP15	ENSG00000102996|ENST00000219271|MMP15	ENSG00000102996|ENST00000219271|MMP15	MULTI-MSMS	HCT116MG_D190212_S4	4	563.2623901367188	2	563.262185	1124.50982	0.21853	0.00012309	0.26993	0.00015204	0.48846	0.00027513	563.2622070416303	23.609	0.26007	23.361	23.22	23.48	-0.24775					7	4	2	0	0	0	0.59843	1	8299	8299		35.612	5.7717	1	2105900			13160	1866	7784	7828	12629	12629					-0.047458311554009924
GTPPPLLLPP	10	Unmodified	_GTPPPLLLPP_					0	0	0			REV__PRCC|p.E322Nfs*105|1|0.15|ENSG00000143294|chr1:156787047-156787047|C/-|frameshift_variant	REV__PRCC|p.E322Nfs*105|1|0.15|ENSG00000143294|chr1:156787047-156787047|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	501.3028259277344	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.374	1	28.044	27.544	28.544	-0.32987								0	0	0	0.90023	1	10347	10347		15.847	0	1		+		13161	12380	7785	7829	12630	12630					0.09544405488099983
GTPPQNFTV	9	Unmodified	_GTPPQNFTV_					0	0	0		ENST00000534789.5_1_19:50838228-50848012:-|nuORF;ENST00000534096.5_1_19:50838046-50848012:-|nuORF;ENSG00000131400|ENST00000253719|NAPSA	ENST00000534789.5_1_19:50838228-50848012:-|nuORF	ENST00000534789.5_1_19:50838228-50848012:-|nuORF	MSMS	HCT116MG_D190212_S4	4	480.74102783203125	2	480.742899	959.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.453	1	33.07	32.57	33.57	-0.38223								0	0	0	0.69648	1	12179	12179		19.257	1.1106	1				13162	3138	7786	7830	12631	12631					-0.010110919992484924
GTRKLMLKIR	10	Unmodified	_GTRKLMLKIR_					0	0	0		ENST00000256442.9_1_5:68462964-68463831:+|nuORF	ENST00000256442.9_1_5:68462964-68463831:+|nuORF	ENST00000256442.9_1_5:68462964-68463831:+|nuORF	MSMS	HCT116MG_D190212_S1	1	608.3845825195312	2	608.389542	1214.76453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.935	1	62.935	62.435	63.435	0								0	0	0	0.9696	1	24311	24311		0.35063	0.081612	1				13163	6821	7787	7831	12632	12632					0.16573983849934848
GTTFHGTG	8	Unmodified	_GTTFHGTG_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MSMS	HCT116MG_D190212_S4	4	389.1805725097656	2	389.179935	776.345317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.14	1	48.775	48.275	49.275	-0.365								0	0	0	0.8837	1	18217	18217		2.5775	0	1				13164	9392	7788	7832	12633	12633					-0.0518017878464434
GTTVKMECFAL	11	Unmodified	_GTTVKMECFAL_					0	0	0		ENST00000528727.5_1_11:99426939-100095567:+|nuORF;nc|ENSG00000149972|O94779-4|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5	ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	601.2957763671875	2	600.293585	1198.57262	0.48853	0.00029326	-0.4843	-0.00029072	0.0042274	2.5377E-06	601.2959161449928	31.994	1.3537	31.716	31.265	32.619	-0.27841					54	25	4	0	0	0	0.7259	1	11651	11651		12.241	0.74595	1	13968000			13165	4078	7789	7833	12634	12634					-0.018727246831986122
GTVAESENIP	10	Unmodified	_GTVAESENIP_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MSMS	HCT116MG_D190212_S2	2	508.74700927734375	2	508.748379	1015.4822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.382	1	35.239	34.739	35.739	-0.14245								0	0	0	0.90023	1	13196	13196		15.847	0	1				13166	5379	7790	7834	12635	12635					-0.024917344156278887
GTVFLVWTI	9	Unmodified	_GTVFLVWTI_					0	0	0		ENST00000586944.5_1_19:807712-810823:+|nuORF	ENST00000586944.5_1_19:807712-810823:+|nuORF	ENST00000586944.5_1_19:807712-810823:+|nuORF	MSMS	HCT116MG_D190212_S2	2	518.2979736328125	2	518.29731	1034.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.276	1	52.088	51.588	52.588	-0.18725								0	0	0	0.56943	1	20077	20077		25.399	6.1423	1				13167	9000	7791	7835	12636	12636					0.06416118971060314
GTVLVRRNPIN	11	Unmodified	_GTVLVRRNPIN_					0	0	0			REV__ENST00000519719.1_1_5:162930400-162939205:+|nuORF	REV__ENST00000519719.1_1_5:162930400-162939205:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	619.870361328125	2	619.870028	1237.7255	0.68206	0.00042279	-0.13667	-8.4716E-05	0.54539	0.00033807	620.3719657186539	53.696	1.6433	53.696	52.434	54.077	0					53	31	2	0	0	0	0.74191	1	20354	20354		2.9952	1.151	1	38585000	+		13168	10582	7792	7836	12637	12637					0.11614974819940471
GTVPIVPLQFH	11	Unmodified	_GTVPIVPLQFH_					0	0	0			REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant	REV__AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	403.23248291015625	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1617	1	5.9871	5.4871	6.4871	-0.17458								0	0	0	0.9619	1	1943	1943		0.094841	0	1		+		13169	9891	7793	7837	12638	12638					0.08102266811101799
GTVYEDLRY	9	Unmodified	_GTVYEDLRY_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	HCT116MG_D190212_S1	1	558.2719116210938	2	558.272021	1114.52949	0.13054	7.2879E-05	-0.036249	-2.0237E-05	0.094296	5.2643E-05	558.2719718731777	40.82	0.35492	40.82	40.591	40.946	0					20	6	5	0	0	0	0.0042464	1	15333	15333		147.06	80.602	1	646020000			13170	5360	7794	7838	12639	12639					-0.02319455144629501
GTVYEDLRY	9	Unmodified	_GTVYEDLRY_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	HCT116MG_D190212_S1	1	1115.5364990234375	1	1115.53677	1114.52949	0.30211	0.00033701	-0.55119	-0.00061488	-0.24909	-0.00027787	1115.536088967742	40.791	0.25737	40.791	40.64	40.897	0					7	4	2	0	0	0	0.0035631	1	15349	15349		173.69	84.732	1	19145000			13171	5360	7794	7838	12640	12640					-0.02319455144629501
GTVYEDLRY	9	Unmodified	_GTVYEDLRY_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2721557617188	2	558.272021	1114.52949	0.54574	0.00030467	0.095387	5.3252E-05	0.64112	0.00035792	558.2720687934524	40.718	0.92953	40.648	40.209	41.138	-0.069626					52	17	5	0	0	0	0.0035147	1	15365	15365		168.66	96.736	1	1941899999.9999998			13172	5360	7794	7838	12641	12641					-0.02319455144629501
GTVYEDLRY	9	Unmodified	_GTVYEDLRY_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	HCT116MG_D190212_S2	2	1115.537109375	1	1115.53677	1114.52949	0.71989	0.00080306	-0.037522	-4.1858E-05	0.68237	0.00076121	1115.5365392285844	40.769	0.36157	40.699	40.519	40.881	-0.069626					16	6	3	0	0	0	8.7331E-05	1	15370	15370		201.57	125.81	1	165840000			13173	5360	7794	7838	12642	12642					-0.02319455144629501
GTVYEDLRY	9	Unmodified	_GTVYEDLRY_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	HCT116MG_D190212_S3	3	558.2725830078125	2	558.272021	1114.52949	0.52576	0.00029352	0.09888	5.5202E-05	0.62464	0.00034872	558.2720543957181	41.056	0.52176	40.755	40.475	40.997	-0.30185					21	9	4	0	0	0	0.071914	1	15307	15307		63.961	33.324	1	88393000			13174	5360	7794	7838	12643	12643					-0.02319455144629501
GTVYEDLRY	9	Unmodified	_GTVYEDLRY_					0	0	0		nc|ENSG00000175063|O00762-2|UBE2C;ENSG00000175063|ENST00000356455|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	nc|ENSG00000175063|O00762-2|UBE2C	MULTI-MSMS	HCT116MG_D190212_S4	4	558.272216796875	2	558.272021	1114.52949	0.30316	0.00016925	-0.31448	-0.00017557	-0.011317	-6.3182E-06	558.272214470948	41.159	0.27315	40.781	40.574	40.848	-0.37732					11	5	3	0	0	0	0.016744	1	15129	15129		99.755	49.822	1	11238000			13175	5360	7794	7838	12644	12644					-0.02319455144629501
GTWITSDPL	9	Unmodified	_GTWITSDPL_					0	0	0		ENST00000304045.6_1_19:51480794-51487328:-|nuORF	ENST00000304045.6_1_19:51480794-51487328:-|nuORF	ENST00000304045.6_1_19:51480794-51487328:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	989.493408203125	1	989.493838	988.486562	0.51498	0.00050957	0.16457	0.00016284	0.67955	0.00067241	989.493720140852	44.698	0.20826	44.698	44.568	44.777	0					5	3	2	0	0	0	0.33687	1	16944	16944		26.884	3.7352	1	16702000			13176	7018	7795	7839	12645	12645					-0.00814225202043417
GVAAAAPTA	9	Unmodified	_GVAAAAPTA_					0	0	0		ENST00000396987.7_1_8:41478532-41478793:+|nuORF	ENST00000396987.7_1_8:41478532-41478793:+|nuORF	ENST00000396987.7_1_8:41478532-41478793:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	728.3936767578125	1	728.39373	727.386454	0.89915	0.00065494	0.042806	3.1179E-05	0.94196	0.00068612	728.3936584387011	32.9	0.25946	32.519	32.311	32.57	-0.38078					6	4	2	0	0	0	0.20784	1	11997	11997		40.449	6.3461	1	2333900			13177	7660	7796	7840	12646	12646					0.011855822548000106
GVAARGVH	8	Unmodified	_GVAARGVH_					0	0	0			REV__ENST00000292513.3_1_19:14584596-14585124:-|nuORF	REV__ENST00000292513.3_1_19:14584596-14585124:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	383.71929931640625	2	383.719562	765.42457	-0.12692	-4.8703E-05	0.45428	0.00017432	0.32736	0.00012561	383.71931005854634	21.967	0.41759	21.967	21.75	22.167	0					12	7	2	0	0	0	0.77285	1	7764	7764		14.582	0	1	5469800	+		13178	14751	7797	7841	12647	12647					0.032475129601380104
GVAARGVH	8	Unmodified	_GVAARGVH_					0	0	0			REV__ENST00000292513.3_1_19:14584596-14585124:-|nuORF	REV__ENST00000292513.3_1_19:14584596-14585124:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	383.7193603515625	2	383.719562	765.42457	0.059825	2.2956E-05	0.38834	0.00014901	0.44817	0.00017197	383.7194490486135	22.14	0.88296	21.912	21.468	22.351	-0.22777					39	16	4	0	0	0	0.77285	1	7581	7581		14.582	2.0501	1	39296000	+		13179	14751	7797	7841	12648	12648					0.032475129601380104
GVACGTPWD	9	Unmodified	_GVACGTPWD_					0	0	0		ENST00000367075.3_1_6:159204692-159205726:-|nuORF	ENST00000367075.3_1_6:159204692-159205726:-|nuORF	ENST00000367075.3_1_6:159204692-159205726:-|nuORF	MSMS	HCT116MG_D190212_S4	4	453.1968688964844	2	453.194728	904.374903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.956	1	35.57	35.07	36.07	-0.38584								0	0	0	0.76781	1	13139	13139		8.5933	2.8329	1				13180	7377	7798	7842	12649	12649					-0.0811098283083993
GVAEAAPGPAQ	11	Unmodified	_GVAEAAPGPAQ_					0	0	0			REV__ENST00000596045.1_1_10:104210673-104210754:+|nuORF	REV__ENST00000596045.1_1_10:104210673-104210754:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.24609375	2	484.245806	966.47706	0.19998	9.6839E-05	0.32053	0.00015522	0.52051	0.00025206	484.2460145939037	24.798	0.51987	24.422	24.192	24.711	-0.37556					17	9	3	0	0	0	0.69464	1	8910	8910		23.79	4.5328	1	14628000	+		13181	16719	7799	7843	12650	12650					-0.0075199348757450934
GVAGPKGPAG	10	Unmodified	_GVAGPKGPAG_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;ENST00000471344.1_1_17:48271316-48272105:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	405.7267761230469	2	405.727052	809.439552	0.050332	2.0421E-05	-0.086589	-3.5132E-05	-0.036257	-1.4711E-05	405.7268157768786	18.822	0.2079	18.641	18.563	18.771	-0.18052					5	3	2	0	0	0	0.64004	1	6376	6376		25.399	2.2509	1	785020			13182	513;514	7800	7844	12651	12651					0.02720960037470377
GVAGPKGPAGE	11	Unmodified	_GVAGPKGPAGE_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;ENST00000471344.1_1_17:48271316-48272105:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	470.2479553222656	2	470.248349	938.482145	0.17631	8.291E-05	-0.35571	-0.00016727	-0.1794	-8.4361E-05	470.2481925289558	19.04	0.31184	19.109	18.927	19.239	0.069159					8	5	2	0	0	0	0.057688	1	6497	6497		96.936	56.696	1	9532100			13183	513;514	7801	7845	12652	12652					0.010443103750503724
GVAGPKGPAGE	11	Unmodified	_GVAGPKGPAGE_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;ENST00000471344.1_1_17:48271316-48272105:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	470.2481689453125	2	470.248349	938.482145	0.18564	8.7298E-05	0.040194	1.8901E-05	0.22584	0.0001062	470.24823638550686	19.521	0.57286	19.581	19.229	19.802	0.059828					19	10	3	0	0	0	0.036041	1	6742	6742		114.19	64.253	1	9368600			13184	513;514	7801	7845	12653	12653					0.010443103750503724
GVAGPKGPAGE	11	Unmodified	_GVAGPKGPAGE_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;ENST00000471344.1_1_17:48271316-48272105:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	470.24786376953125	2	470.248349	938.482145	0.11786	5.5426E-05	0.0040703	1.9141E-06	0.12194	5.734E-05	470.24828368968474	19.342	0.26002	19.155	18.973	19.233	-0.18674					8	4	2	0	0	0	0.032732	1	6541	6541		107.1	58.754	1	4657400			13185	513;514	7801	7845	12654	12654					0.010443103750503724
GVAGPKGPAGE	11	Unmodified	_GVAGPKGPAGE_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;ENST00000471344.1_1_17:48271316-48272105:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	470.2484436035156	2	470.248349	938.482145	0.14291	6.7203E-05	0.019829	9.3246E-06	0.16274	7.6528E-05	470.248309952983	19.817	0.51015	19.623	19.33	19.84	-0.19367					17	9	2	0	0	0	0.11146	1	6781	6781		87.258	41.237	1	6410400			13186	513;514	7801	7845	12655	12655					0.010443103750503724
GVAGPKGPAGE	11	Unmodified	_GVAGPKGPAGE_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;ENST00000471344.1_1_17:48271316-48272105:-|nuORF;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	470.248349	938.482145	0.13908	6.5403E-05	-0.025665	-1.2069E-05	0.11342	5.3334E-05	470.2481809206599	20.166	0.36412	19.791	19.61	19.974	-0.37503	0.12598	-4.6873E-05	NaN	114.19	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5627100			13187	513;514	7801	7845							0.010443103750503724
GVAKMSLDP	9	Unmodified	_GVAKMSLDP_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MSMS	HCT116MG_D190212_S1	1	459.2430114746094	2	459.241678	916.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.746	1	20.746	20.246	21.246	0								0	0	0	0.76902	1	7267	7267		4.3292	0.38484	1				13188	2585	7802	7846	12656	12656					0.007227362714388619
GVALLRPEPLH	11	Unmodified	_GVALLRPEPLH_					0	0	0		ENST00000468037.1_1_6:31660724-31670409:-|nuORF;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;nc|ENSG00000204427|O95870-2|ABHD16A;ENSG00000204427|ENST00000395952|ABHD16A	ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000468037.1_1_6:31660724-31670409:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	601.7632446289062	2	601.356222	1200.69789	0.86648	0.00052106	-0.044944	-2.7028E-05	0.82153	0.00049403	601.3561082687457	44.951	0.46864	44.859	44.581	45.05	-0.091518					13	8	2	0	0	0	0.36296	1	17035	17035		1.4819	0	1	17250000			13189	6333	7803	7847	12657	12657					0.10557071559696851
GVANAAAKTTA	11	Unmodified	_GVANAAAKTTA_					0	0	0		nc|ENSG00000126500|Q9NZU1-1|FLRT1;ENSG00000126500|ENST00000682287|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	MSMS	HCT116MG_D190212_S3	3	487.766845703125	2	487.766906	973.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.73	1	34.433	33.933	34.933	-0.29707								0	0	0	0.78817	1	12794	12794		34.402	2.0962	1				13190	2939	7804	7848	12658	12658					0.03143981920788974
GVAPHKRK	8	Unmodified	_GVAPHKRK_					0	0	0		ENST00000558121.5_1_15:60715835-60734771:-|nuORF;ENSG00000128915|ENST00000261520|ICE2	ENST00000558121.5_1_15:60715835-60734771:-|nuORF	ENST00000558121.5_1_15:60715835-60734771:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	446.2599182128906	2	446.777411	891.540269	0.35483	0.00015853	0.020214	9.0312E-06	0.37504	0.00016756	446.7774609578554	31.785	0.20644	31.536	31.458	31.665	-0.24883					5	3	2	0	0	0	0.33574	1	11775	11775		0.79363	0	1	20372000			13191	3018	7805	7849	12659	12659					0.09016036810987771
GVARLAQP	8	Unmodified	_GVARLAQP_					0	0	0		ENST00000480273.5_1_20:62327775-62327979:+|nuORF	ENST00000480273.5_1_20:62327775-62327979:+|nuORF	ENST00000480273.5_1_20:62327775-62327979:+|nuORF	MSMS	HCT116MG_D190212_S4	4	406.2444152832031	2	406.24287	810.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.079	1	31.703	31.203	32.203	-0.37529								0	0	0	0.8837	1	11669	11669		5.7604	2.8712	1				13192	8239	7806	7850	12660	12660					0.058369527914123864
GVARRKKT	8	Unmodified	_GVARRKKT_					0	0	0			REV__ENST00000406438.4_1_17:18218648-18218918:+|nuORF	REV__ENST00000406438.4_1_17:18218648-18218918:+|nuORF	MSMS	HCT116MG_D190212_S1	1	458.2957458496094	2	458.295968	914.577383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.965	1	41.965	41.465	42.465	0								0	0	0	0.8837	1	15815	15815		2.5775	0.27475	1		+		13193	15413	7807	7851	12661	12661					0.11667708356753792
GVARRWRRRQG	11	Unmodified	_GVARRWRRRQG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	699.4083251953125	2	699.408509	1396.80247	0.71817	0.0005023	-0.033575	-2.3483E-05	0.6846	0.00047881	699.4083264716369	54.229	3.4431	54.039	52.088	55.531	-0.1894					148	66	4	0	0	0	0.74191	1	20164	20164		1.4819	1.4819	1	133990000	+		13194	15120	7808	7852	12662	12662					0.11993630879601369
GVARRWRRRQG	11	Unmodified	_GVARRWRRRQG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	699.4091186523438	2	699.408509	1396.80247	0.8202	0.00057366	-0.1445	-0.00010107	0.6757	0.00047259	699.408236603519	54.383	1.9277	54.059	53.151	55.078	-0.32349					66	36	3	0	0	0	0.74191	1	20198	20198		0.35063	0.35063	1	14454000	+		13195	15120	7808	7852	12663	12663					0.11993630879601369
GVARRWRRRQG	11	Unmodified	_GVARRWRRRQG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	699.408509	1396.80247	0.71817	0.0005023	-0.033575	-2.3483E-05	0.6846	0.00047881	699.4083264716369	54.229	3.4431	54.039	52.088	55.531	-0.1894	-0.0058195	4.9596E-05	NaN	1.4819	148	66	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133990000	+		13196	15120	7808	7852							0.11993630879601369
GVARRWRRRQG	11	Unmodified	_GVARRWRRRQG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	699.408509	1396.80247	0.74675	0.00052229	-0.032083	-2.2439E-05	0.71467	0.00049985	699.4084294852356	54.333	0.78296	54.037	53.617	54.4	-0.29587	-0.0081563	5.1682E-05	NaN	1.4819	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3261800	+		13197	15120	7808	7852							0.11993630879601369
GVATATRVVQ	10	Unmodified	_GVATATRVVQ_					0	0	0			REV__ENST00000341394.8_1_11:34073366-34074044:+|nuORF	REV__ENST00000341394.8_1_11:34073366-34074044:+|nuORF	MSMS	HCT116MG_D190212_S1	1	501.2906188964844	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.133	1	45.133	44.633	45.633	0								0	0	0	0.92272	1	17092	17092		10.824	3.5347	1		+		13198	14972	7809	7853	12664	12664					0.06628261191804086
GVAVDRNGHII	11	Unmodified	_GVAVDRNGHII_					0	0	0		ENST00000530724.1_1_11:6471537-6472266:-|nuORF;nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MSMS	HCT116MG_D190212_S2	2	575.8186645507812	2	575.820004	1149.62546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.004	1	9.7396	9.2396	10.24	-0.26472								0	0	0	0.95273	1	3146	3146		4.897	1.3005	1				13199	2238	7810	7854	12665	12665					0.056627374861591306
GVAVMKIR	8	Unmodified	_GVAVMKIR_					0	0	0			REV__ADH1B|p.L62Ffs*3|1|0.27|ENSG00000196616|chr4:99318121-99318121|G/-|frameshift_variant	REV__ADH1B|p.L62Ffs*3|1|0.27|ENSG00000196616|chr4:99318121-99318121|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	437.2724914550781	2	437.270573	872.526593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.799	1	48.434	47.934	48.934	-0.365								0	0	0	0.8837	1	18080	18080		2.5775	0	1		+		13200	9875	7811	7855	12666	12666					0.08523042987530971
GVAVRVRF	8	Unmodified	_GVAVRVRF_					0	0	0		nc|ENSG00000103356|Q5JPH6-2|EARS2;ENST00000561859.5_1_16:23555925-23568664:-|nuORF;ENSG00000103356|ENST00000449606|EARS2;ENST00000562799.1_1_16:23568454-23568652:-|nuORF	nc|ENSG00000103356|Q5JPH6-2|EARS2	nc|ENSG00000103356|Q5JPH6-2|EARS2	MSMS	HCT116MG_D190212_S4	4	452.2779235839844	2	452.279786	902.54502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.952	1	52.612	52.112	53.112	-0.34023								0	0	0	0.8837	1	19755	19755		6.3541	3.4649	1				13201	9410	7812	7856	12667	12667					0.08984920953753317
GVAVRVRFA	9	Unmodified	_GVAVRVRFA_					0	0	0		nc|ENSG00000103356|Q5JPH6-2|EARS2;ENST00000561859.5_1_16:23555925-23568664:-|nuORF;ENSG00000103356|ENST00000449606|EARS2;ENST00000562799.1_1_16:23568454-23568652:-|nuORF	nc|ENSG00000103356|Q5JPH6-2|EARS2	nc|ENSG00000103356|Q5JPH6-2|EARS2	MSMS	HCT116MG_D190212_S2	2	487.75274658203125	2	487.798343	973.582134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.841	1	53.652	53.152	54.152	-0.1894								0	0	0	0.76781	1	20715	20715		8.5933	1.304	1				13202	9410	7813	7857	12668	12668					0.0942859249950061
GVAVSNQV	8	Unmodified	_GVAVSNQV_					0	0	0			REV__ENST00000513432.5_1_18:13030586-13057756:+|nuORF	REV__ENST00000513432.5_1_18:13030586-13057756:+|nuORF	MSMS	HCT116MG_D190212_S4	4	387.2122497558594	2	387.211235	772.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.277	1	36.893	36.393	37.393	-0.3839								0	0	0	0.8837	1	13674	13674		5.7604	1.0044	1		+		13203	10161	7814	7858	12669	12669					0.012609672835196761
GVAYKAGN	8	Unmodified	_GVAYKAGN_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-SECPEP	HCT116MG_D190212_S2	2	390.89996337890625	2	390.205953	778.397353	0.15304	5.9717E-05	0.070084	2.7347E-05	0.22312	8.7064E-05	390.205976005762	36.691	0.25865	36.576	36.395	36.653	-0.11478					8	4	2	0	0	0	0.3238	1	13657	13657		5.7604	3.1829	1	15971000			13204	6184	7815	7859	12670	12670					-0.000710153709064798
GVAYLWGDMAV	11	Unmodified	_GVAYLWGDMAV_					0	0	0			REV__ENSG00000187961|ENST00000338591|KLHL17	REV__ENSG00000187961|ENST00000338591|KLHL17	MSMS	HCT116MG_D190212_S1	1	591.6627197265625	2	591.286617	1180.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.073	1	40.073	39.573	40.573	0								0	0	0	0.93374	1	15051	15051		14.838	6.6827	1		+		13205	13942	7816	7860	12671	12671					-0.02437634119996801
GVCDHEMG	8	Unmodified	_GVCDHEMG_					0	0	0		ENST00000600425.5_1_19:53490042-53541028:-|nuORF;ENST00000270443.8_1_19:53490042-53496750:-|nuORF;ENST00000594516.1_1_19:53490042-53541028:-|nuORF	ENST00000600425.5_1_19:53490042-53541028:-|nuORF	ENST00000600425.5_1_19:53490042-53541028:-|nuORF	MSMS	HCT116MG_D190212_S3	3	424.1583557128906	2	424.157288	846.300023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.072	1	14.147	13.647	14.647	0.074899								0	0	0	0.8837	1	4505	4505		0.79363	0	1				13206	6920	7817	7861	12672	12672					-0.12927488633704343
GVCLVLPLLL	10	Unmodified	_GVCLVLPLLL_					0	0	0			REV__ENST00000415659.2_1_5:122364834-122372365:-|nuORF	REV__ENST00000415659.2_1_5:122364834-122372365:-|nuORF	MSMS	HCT116MG_D190212_S1	1	520.332763671875	2	520.332839	1038.65112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.968	1	53.968	53.468	54.468	0								0	0	0	0.96291	1	20682	20682		1.8442	0.19162	1		+		13207	13215	7818	7862	12673	12673					0.13334495684216563
GVDAAGFG	8	Unmodified	_GVDAAGFG_					0	0	0		ENST00000266671.9_1_12:76425523-76425823:-|nuORF	ENST00000266671.9_1_12:76425523-76425823:-|nuORF	ENST00000266671.9_1_12:76425523-76425823:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	693.3204345703125	1	693.320231	692.312954	0.6153	0.0004266	0.27681	0.00019192	0.89211	0.00061852	693.3203159498391	17.706	0.88776	17.35	16.762	17.65	-0.35647					21	16	2	0	0	0	0.55314	1	6021	6021		36.466	4.3492	1	8196300			13208	6906	7819	7863	12674	12674					-0.045509661876621976
GVDAAGFG	8	Unmodified	_GVDAAGFG_					0	0	0		ENST00000266671.9_1_12:76425523-76425823:-|nuORF	ENST00000266671.9_1_12:76425523-76425823:-|nuORF	ENST00000266671.9_1_12:76425523-76425823:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	693.3212890625	1	693.320231	692.312954	0.35725	0.00024769	0.1491	0.00010338	0.50635	0.00035106	693.3201095216847	17.38	0.51716	17.209	16.812	17.329	-0.17046					12	9	2	0	0	0	0.55314	1	5742	5742		36.466	4.3492	1	1516300			13209	6906	7819	7863	12675	12675					-0.045509661876621976
GVDAAGFG	8	Unmodified	_GVDAAGFG_					0	0	0		ENST00000266671.9_1_12:76425523-76425823:-|nuORF	ENST00000266671.9_1_12:76425523-76425823:-|nuORF	ENST00000266671.9_1_12:76425523-76425823:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	693.320231	692.312954	0.60165	0.00041713	-0.11309	-7.8408E-05	0.48856	0.00033873	693.3199482251541	17.27	0.83251	17.354	16.86	17.693	0.084467	0.049967	-0.0001758	NaN	36.466	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5035300			13210	6906	7819	7863							-0.045509661876621976
GVDASQLNFR	10	Unmodified	_GVDASQLNFR_					0	0	0			REV__SLCO3A1|p.L323Wfs*13|1|0.29|ENSG00000176463|chr15:92104496-92104496|C/-|frameshift_variant	REV__SLCO3A1|p.L323Wfs*13|1|0.29|ENSG00000176463|chr15:92104496-92104496|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7824096679688	2	553.783087	1105.55162	0.33992	0.00018824	-0.84069	-0.00046556	-0.50077	-0.00027732	553.782785886526	20.776	0.68453	20.397	19.917	20.602	-0.37949					25	12	3	0	0	0	0.48137	1	7290	7290		36.506	3.0613	1	13538000	+		13211	13544	7820	7864	12676	12676					0.0030676932381084043
GVDDAANFRTV	11	Unmodified	_GVDDAANFRTV_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	583.0892333984375	2	582.785827	1163.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.536	1	35.393	34.893	35.893	-0.14245								0	0	0	0.63979	1	13259	13259		41.347	23.201	1				13212	3004	7821	7865	12677	12677					-0.018135518844019316
GVDDDDDD	8	Unmodified	_GVDDDDDD_					0	0	0			REV__ENST00000589825.5_1_17:42960950-42971889:-|nuORF	REV__ENST00000589825.5_1_17:42960950-42971889:-|nuORF	MSMS	HCT116MG_D190212_S1	1	433.1382141113281	2	433.138327	864.262101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.002	1	31.002	30.502	31.502	0								0	0	0	0.8837	1	11391	11391		0.79363	0.79363	1		+		13213	11359	7822	7866	12678	12678					-0.1754600481384614
GVDEILLPREL	11	Unmodified	_GVDEILLPREL_					0	0	0			REV__DNAH5|p.G3644E|1|0.19|ENSG00000039139|chr5:13752231-13752231|C/T|missense_variant	REV__DNAH5|p.G3644E|1|0.19|ENSG00000039139|chr5:13752231-13752231|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	627.3584594726562	2	627.358628	1252.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.174	1	56.995	56.495	57.495	-0.17904								0	0	0	0.94012	1	22071	22071		11.495	0.67078	1		+		13214	10383	7823	7867	12679	12679					0.08645910911832289
GVDNPAAK	8	Unmodified	_GVDNPAAK_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MSMS	HCT116MG_D190212_S4	4	386.20184326171875	2	386.20341	770.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.622	1	24.354	23.854	24.854	-0.26881								0	0	0	0.8837	1	8685	8685		4.756	1.8668	1				13215	4831	7824	7868	12680	12680					-0.00211319233528684
GVDRGPTAPG	10	Unmodified	_GVDRGPTAPG_					0	0	0			REV__ENST00000456420.6_2_16:684599-686105:-|nuORF	REV__ENST00000456420.6_2_16:684599-686105:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	463.73779296875	2	463.738148	925.461744	0.26414	0.00012249	-0.39269	-0.0001821	-0.12855	-5.9613E-05	463.7379394000681	16.344	0.46799	16.429	16.237	16.705	0.085424					11	8	2	0	0	0	0.86339	1	5422	5422		6.7232	0.51738	1	1597200	+		13216	15752	7825	7869	12681	12681					-0.003968602847749025
GVDVTGPHLY	10	Unmodified	_GVDVTGPHLY_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-MSMS	HCT116MG_D190212_S1	1	529.2694702148438	2	529.269281	1056.52401	0.11832	6.2621E-05	-0.15526	-8.2174E-05	-0.036945	-1.9554E-05	529.2691431893763	39.596	0.26062	39.596	39.449	39.709	0					7	4	2	0	0	0	0.11491	1	14874	14874		71.134	40.497	1	13083000			13217	3444	7826	7870	12682	12682					-0.0019913393641672883
GVEAAREWMF	10	Unmodified	_GVEAAREWMF_					0	0	0		GPI|p.R83W|1|0.25|ENSG00000105220|chr19:34366816-34366816|C/T|missense_variant	GPI|p.R83W|1|0.25|ENSG00000105220|chr19:34366816-34366816|C/T|missense_variant	GPI|p.R83W|1|0.25|ENSG00000105220|chr19:34366816-34366816|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	598.7686157226562	2	598.281866	1194.54918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.348	1	26.047	25.547	26.547	-0.30087								0	0	0	0.90892	1	9382	9382		13.906	2.2658	1				13218	9190	7827	7871	12683	12683					-0.04031402405530571
GVEADPPA	8	Unmodified	_GVEADPPA_					0	0	0			REV__ENST00000566203.6_1_20:33859916-33865902:-|nuORF	REV__ENST00000566203.6_1_20:33859916-33865902:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	755.357666015625	1	755.35701	754.349734	0.53105	0.00040113	0.15448	0.00011669	0.68553	0.00051782	755.3569388534556	24.858	2.1878	24.774	22.987	25.174	-0.083694					73	41	3	0	0	0	0.50777	1	8963	8963		40.449	0.49126	1	10847000	+		13219	16542	7828	7872	12684	12684					-0.03726714361766881
GVEAGEFLKSR	11	Unmodified	_GVEAGEFLKSR_					0	0	0		nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF;ENSG00000149115|ENST00000358252|TNKS1BP1	nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	MULTI-MSMS	HCT116MG_D190212_S4	4	597.2861328125	2	596.81967	1191.62479	0.89744	0.00053561	-0.26226	-0.00015652	0.63519	0.00037909	596.8194212040399	23.125	0.88775	22.887	22.133	23.021	-0.23758					22	16	2	0	0	0	0.70073	2	7866	7866;7970		21.537	7.1316	1	3079600			13220	4041	7829	7873	12685;12686	12685					0.03663898046397662
GVEAGQTPRNY	11	Unmodified	_GVEAGQTPRNY_					0	0	0		ENST00000469214.2_1_1:193028800-193029098:+|nuORF	ENST00000469214.2_1_1:193028800-193029098:+|nuORF	ENST00000469214.2_1_1:193028800-193029098:+|nuORF	MSMS	HCT116MG_D190212_S4	4	596.2916870117188	2	596.291276	1190.568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.809	1	26.5	26	27	-0.30907								0	0	0	0.91433	1	9568	9568		18.146	5.1039	1				13221	8135	7830	7874	12687	12687					-0.019661495100763204
GVEAGSIHHDK	11	Unmodified	_GVEAGSIHHDK_					0	0	0			REV__nc|ENSG00000206203|Q96PF2|TSSK2	REV__nc|ENSG00000206203|Q96PF2|TSSK2	MULTI-MSMS	HCT116MG_D190212_S4	4	575.2857666015625	2	575.285994	1148.55744	0.31613	0.00018187	-0.038527	-2.2164E-05	0.2776	0.0001597	575.2857178440049	22.814	0.46952	22.576	22.393	22.863	-0.23758					18	8	3	0	0	0	0.68267	1	7940	7940		26.268	1.2772	1	9494200	+		13222	17275	7831	7875	12688	12688					-0.010901321645405915
GVEAGSIHHDK	11	Unmodified	_GVEAGSIHHDK_					0	0	0			REV__nc|ENSG00000206203|Q96PF2|TSSK2	REV__nc|ENSG00000206203|Q96PF2|TSSK2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	575.285994	1148.55744	0.38822	0.00022334	-0.11601	-6.6737E-05	0.27221	0.0001566	575.2856512375333	22.692	0.71671	22.673	22.439	23.156	-0.018869	0.04847	-4.877E-05	NaN	26.268	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8205100	+		13223	17275	7831	7875							-0.010901321645405915
GVEAIAASSVA	11	Unmodified	_GVEAIAASSVA_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MSMS	HCT116MG_D190212_S4	4	487.7611999511719	2	487.761289	973.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.318	1	29.961	29.461	30.461	-0.3571								0	0	0	0.92983	1	10986	10986		16.149	2.2431	1		+		13224	12607	7832	7876	12689	12689					0.020211598266769215
GVEDYFTLY	9	Unmodified	_GVEDYFTLY_					0	0	0		ENST00000477721.1_1_3:158399847-158408148:+|nuORF;ENSG00000168827|ENST00000486715|GFM1;nc|ENSG00000168827|Q96RP9-2|GFM1	ENST00000477721.1_1_3:158399847-158408148:+|nuORF	ENST00000477721.1_1_3:158399847-158408148:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	553.2911376953125	2	553.755672	1105.49679	0.27572	0.00015268	-0.24691	-0.00013673	0.028805	1.5951E-05	553.7554782417241	19.994	0.36263	19.619	19.455	19.817	-0.37503					14	6	4	0	0	0	0.25445	1	6905	6905		8.5933	5.598	1	25964000			13225	5034	7833	7877	12690	12690					-0.05173662267452528
GVEEDLSPEEA	11	Unmodified	_GVEEDLSPEEA_					0	0	0		nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH;ENST00000482858.5_1_22:18910525-18923653:-|nuORF;ENST00000491604.5_1_22:18909836-18923800:-|nuORF	nc|ENSG00000100033|O43272-2|PRODH	nc|ENSG00000100033|O43272-2|PRODH	MSMS	HCT116MG_D190212_S4	4	587.7593383789062	2	587.75914	1173.50373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.637	1	21.419	20.919	21.919	-0.21832								0	0	0	0.92983	1	7481	7481		16.149	0	1				13226	1658	7834	7878	12691	12691					-0.07608394177555056
GVEEQHHRRLY	11	Unmodified	_GVEEQHHRRLY_					0	0	0			REV__nc|ENSG00000100285|P12036-2|NEFH	REV__nc|ENSG00000100285|P12036-2|NEFH	MSMS	HCT116MG_D190212_S4	4	712.3616943359375	2	712.363099	1422.71164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.023	1	30.659	30.159	31.159	-0.36416								0	0	0	0.95113	1	11242	11242		5.7319	0	1		+		13227	11073	7835	7879	12692	12692					0.01719697320868363
GVEESVQVHDA	11	Unmodified	_GVEESVQVHDA_					0	0	0			REV__ENST00000377921.7_1_10:16859009-16859177:-|nuORF	REV__ENST00000377921.7_1_10:16859009-16859177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	585.276123046875	2	585.275292	1168.53603	0.20449	0.00011968	0.33759	0.00019758	0.54208	0.00031727	585.275602438081	17.684	0.83243	17.765	17.273	18.106	0.081358					17	15	2	0	0	0	0.71776	1	5969	5969		15.248	2.206	1	1324800	+		13228	15242	7836	7880	12693	12693					-0.0414956198389973
GVEGAEWWATQ	11	Unmodified	_GVEGAEWWATQ_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	HCT116MG_D190212_S4	4	617.2786865234375	2	617.280377	1232.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.762	1	21.544	21.044	22.044	-0.21832								0	0	0	0.92235	1	7532	7532		17.113	0.96379	1				13229	5292	7837	7881	12694	12694					-0.0607695425867405
GVEGDPPGA	9	Unmodified	_GVEGDPPGA_					0	0	0		nc|ENSG00000221866|Q9HCM2-3|PLXNA4	nc|ENSG00000221866|Q9HCM2-3|PLXNA4	nc|ENSG00000221866|Q9HCM2-3|PLXNA4	MULTI-MSMS	HCT116MG_D190212_S4	4	798.3629760742188	1	798.362824	797.355547	0.91793	0.00073284	-0.18496	-0.00014767	0.73297	0.00058517	798.3627075216851	20.563	1.2466	20.362	19.833	21.079	-0.20133					32	23	2	0	0	0	0.065014	1	7061	7061		67.344	3.781	1	2301600			13230	9638	7838	7882	12695	12695					-0.05123615850095575
GVEGDRDF	8	Unmodified	_GVEGDRDF_					0	0	0			REV__nc|ENSG00000091409|P23229-7|ITGA6	REV__nc|ENSG00000091409|P23229-7|ITGA6	MULTI-MSMS	HCT116MG_D190212_S4	4	448.20263671875	2	447.701232	893.38791	0.18289	8.1881E-05	-0.081611	-3.6537E-05	0.10128	4.5344E-05	447.7011392686428	23.434	1.7203	23.186	22.123	23.844	-0.24775					58	32	2	0	0	0	0.77285	1	8338	8338		14.582	2.0501	1	5983700	+		13231	10995	7839	7883	12696	12696					-0.06304828447093769
GVEGGECTQKP	11	Unmodified	_GVEGGECTQKP_					0	0	0		PRRT2|p.G261C|1|0.39|ENSG00000167371|chr16:29813835-29813835|G/T|missense_variant	PRRT2|p.G261C|1|0.39|ENSG00000167371|chr16:29813835-29813835|G/T|missense_variant	PRRT2|p.G261C|1|0.39|ENSG00000167371|chr16:29813835-29813835|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	552.7553100585938	2	552.753138	1103.49172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.041	1	14.714	14.214	15.214	-0.32684								0	0	0	0.95113	1	4969	4969		5.7319	2.1354	1				13232	9784	7840	7884	12697	12697					-0.05588289401748625
GVEGQDRIYK	10	Unmodified	_GVEGQDRIYK_					0	0	0		tr|U7SV61|U7SV61_FUSNUSalt-inducedoutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01142PE=4SV=1	tr|U7SV61|U7SV61_FUSNUSalt-inducedoutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01142PE=4SV=1	tr|U7SV61|U7SV61_FUSNUSalt-inducedoutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01142PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	583.2205810546875	2	582.80402	1163.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.979	1	20.769	20.269	21.269	-0.20959								0	0	0	0.88261	1	7215	7215		18.146	1.0335	1				13233	18489	7841	7885	12698	12698					0.018233250123103062
GVEHNEDECIC	11	Unmodified	_GVEHNEDECIC_					0	0	0			REV__ENSG00000139797|ENST00000267291|RNF113B	REV__ENSG00000139797|ENST00000267291|RNF113B	MSMS	HCT116MG_D190212_S3	3	624.2369995117188	2	624.236995	1246.45944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.097	1	15.18	14.68	15.68	0.083271								0	0	0	0.95925	1	4913	4913		1.4819	0	1		+		13234	12275	7842	7886	12699	12699					-0.15393444867027029
GVEHNEDECIC	11	Unmodified	_GVEHNEDECIC_					0	0	0			REV__ENSG00000139797|ENST00000267291|RNF113B	REV__ENSG00000139797|ENST00000267291|RNF113B	MSMS	HCT116MG_D190212_S4	4	624.2374267578125	2	624.236995	1246.45944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.216	1	22.969	22.469	23.469	-0.24775								0	0	0	0.95581	1	8117	8117		3.2813	0	1		+		13235	12275	7842	7886	12700	12700					-0.15393444867027029
GVEHPRFRRVH	11	Unmodified	_GVEHPRFRRVH_					0	0	0			REV__sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	REV__sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	MSMS	HCT116MG_D190212_S3	3	695.383056640625	2	695.384168	1388.75378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.508	1	37.207	36.707	37.707	-0.30137								0	0	0	0.95581	1	13896	13896		3.2813	0.28607	1		+		13236	17575	7843	7887	12701	12701					0.07495717519896061
GVEHSPLKSSP	11	Unmodified	_GVEHSPLKSSP_					0	0	0			REV__ENST00000486187.5_1_10:43078317-43078551:-|nuORF	REV__ENST00000486187.5_1_10:43078317-43078551:-|nuORF	MSMS	HCT116MG_D190212_S3	3	569.2989501953125	2	569.29857	1136.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.377	1	61.138	60.638	61.638	-0.2387								0	0	0	0.95636	1	23424	23424		2.9952	0	1		+		13237	15991	7844	7888	12702	12702					0.019759226380301698
GVEKFPCTAV	10	Unmodified	_GVEKFPCTAV_					0	0	0		ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENST00000589947.7_1_19:19459550-19465349:+|nuORF	ENST00000589947.7_1_19:19459550-19465349:+|nuORF	MSMS	HCT116MG_D190212_S3	3	525.7657470703125	2	525.76806	1049.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.578	1	23.538	23.038	24.038	-0.03968								0	0	0	0.76907	1	8331	8331		32.786	5.1569	1				13238	9010	7845	7889	12703	12703					-0.001213056657661582
GVEKVILIQEQ	11	Unmodified	_GVEKVILIQEQ_					0	0	0		POLR3B|p.T279Hfs*46|1|0.25|ENSG00000013503|chr12:106393136-106393137|-/T|frameshift_variant;POLR3B|p.K691Nfs*7|1|0.25|ENSG00000013503|chr12:106444574-106444574|G/-|frameshift_variant;POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant;POLR3B|p.M1020Nfs*18|1|0.13|ENSG00000013503|chr12:106501392-106501393|-/A|frameshift_variant;nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	POLR3B|p.T279Hfs*46|1|0.25|ENSG00000013503|chr12:106393136-106393137|-/T|frameshift_variant	POLR3B|p.T279Hfs*46|1|0.25|ENSG00000013503|chr12:106393136-106393137|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	628.707763671875	2	628.366453	1254.71835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.544	1	17.194	16.694	17.694	-0.34933								0	0	0	0.93295	1	5977	5977		15.248	5.1746	1				13239	914	7846	7890	12704	12704					0.1011819742886928
GVEMHKPTP	9	Unmodified	_GVEMHKPTP_					0	0	0			REV__SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	REV__SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	499.2593078613281	2	498.252577	994.490601	0.37063	0.00018467	1.9203	0.0009568	2.2909	0.0011415	498.25307251302945	31.768	0.88181	31.393	30.76	31.642	-0.37529					24	16	3	0	0	0	0.39063	1	11370	11370		23.148	5.0134	1	10409000	+		13240	13588	7847	7891	12705	12705					-0.006864589799761234
GVEPAMQPPP	10	Unmodified	_GVEPAMQPPP_					0	0	0			REV__ENST00000588774.1_1_17:73839881-73840376:-|nuORF	REV__ENST00000588774.1_1_17:73839881-73840376:-|nuORF	MSMS	HCT116MG_D190212_S2	2	511.7310485839844	2	511.75241	1021.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.116	1	17.759	17.259	18.259	-0.35647								0	0	0	0.82636	1	6207	6207		25.399	1.3787	1		+		13241	16670	7848	7892	12706	12706					-0.01961878699830777
GVEPWEKVY	9	Unmodified	_GVEPWEKVY_					0	0	0			REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	REV__tr|U7T2X3|U7T2X3_FUSNUPropanedioldehydrataselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00493PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	553.77783203125	2	553.779482	1105.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.038	1	31.663	31.163	32.163	-0.37529								0	0	0	0.67173	1	11653	11653		20.454	2.3073	1		+		13242	17933	7849	7893	12707	12707					-0.004139632766282375
GVEQNYRGP	9	Unmodified	_GVEQNYRGP_					0	0	0			REV__ENSG00000140943|ENST00000343411|MBTPS1	REV__ENSG00000140943|ENST00000343411|MBTPS1	MULTI-MSMS	HCT116MG_D190212_S3	3	510.2491760253906	2	510.24888	1018.48321	-0.034126	-1.7413E-05	0.090964	4.6414E-05	0.056838	2.9002E-05	510.2489880922991	17.874	0.6244	17.955	17.69	18.314	0.081358					14	11	2	0	0	0	0.33687	1	6033	6033		26.884	0	1	1811900	+		13243	12315	7850	7894	12708	12708					-0.02529475256051228
GVESSWEPP	9	Unmodified	_GVESSWEPP_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MSMS	HCT116MG_D190212_S4	4	494.223876953125	2	494.224539	986.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.762	1	31.387	30.887	31.887	-0.37529								0	0	0	0.76641	1	11541	11541		13.508	0.97634	1				13244	9427	7851	7895	12709	12709					-0.05923388615804015
GVFAKVSYDK	10	Unmodified	_GVFAKVSYDK_					0	0	0		nc|ENSG00000188803|Q6ZSJ9|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;ENSG00000188803|ENST00000441885|SHISA6	nc|ENSG00000188803|Q6ZSJ9|SHISA6	nc|ENSG00000188803|Q6ZSJ9|SHISA6	MSMS	HCT116MG_D190212_S1	1	557.30224609375	2	557.300581	1112.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.454	1	51.454	50.954	51.954	0								0	0	0	0.78574	1	19659	19659		30.637	5.2372	1				13245	6001	7852	7896	12710	12710					0.03482012131757983
GVFDAAPV	8	Unmodified	_GVFDAAPV_					0	0	0		tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	tr|U7SL02|U7SL02_FUSNUSsuA/THI5-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02015PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	775.39892578125	1	775.398481	774.391205	1.1079	0.00085903	-0.31092	-0.00024109	0.79693	0.00061794	775.398353018085	52.416	0.25685	52.229	52.09	52.347	-0.18726					6	4	2	0	0	0	0.47906	1	20166	20166		42.968	2.5194	1	7891100			13246	18330	7853	7897	12711	12711					-0.005015336024371209
GVFLTLKTSK	10	Unmodified	_GVFLTLKTSK_					0	0	0		ENST00000402364.1_1_13:23903300-23903375:-|nuORF	ENST00000402364.1_1_13:23903300-23903375:-|nuORF	ENST00000402364.1_1_13:23903300-23903375:-|nuORF	MSMS	HCT116MG_D190212_S3	3	547.3323364257812	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.673	1	61.434	60.934	61.934	-0.2387								0	0	0	0.95507	1	23543	23543		3.5965	0.60125	1				13247	7699	7854	7898	12712	12712					0.11167462062553568
GVFRHHQYLGP	11	Unmodified	_GVFRHHQYLGP_					0	0	0		ENST00000420915.1_1_X:26576018-26576444:+|nuORF	ENST00000420915.1_1_X:26576018-26576444:+|nuORF	ENST00000420915.1_1_X:26576018-26576444:+|nuORF	MSMS	HCT116MG_D190212_S1	1	437.5616455078125	3	437.563273	1309.66799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.867	1	15.867	15.367	16.367	0								0	0	0	0.95023	1	5302	5302		2.8433	0.75932	1				13248	7784	7855	7899	12713	12713					0.0255413261436388
GVFSLTRLL	9	Unmodified	_GVFSLTRLL_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	MSMS	HCT116MG_D190212_S4	4	503.3066101074219	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.351	1	39.972	39.472	40.472	-0.37828								0	0	0	0.76967	1	14800	14800		2.0598	0.21551	1		+		13249	13656	7856	7900	12714	12714					0.09974923719596518
GVFTDIEQY	9	Unmodified	_GVFTDIEQY_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;ENST00000475012.5_1_3:62203523-62278979:+|nuORF;PTPRG|p.P1391S|1|0.12|ENSG00000144724|chr3:62292536-62292536|C/T|missense_variant	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.165283203125	2	536.253297	1070.49204	0.38155	0.00020461	-0.24513	-0.00013145	0.13642	7.3157E-05	536.2531145862316	38.669	0.15873	38.584	38.492	38.65	-0.084621					4	2	2	0	0	0	0.24195	1	14533	14533		18.135	8.7875	1	9841000			13250	3879	7857	7901	12715	12715					-0.04038546410242816
GVFTGGLLSSV	11	Unmodified	_GVFTGGLLSSV_					0	0	0			REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	MSMS	HCT116MG_D190212_S1	1	518.7874145507812	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.649	1	18.649	18.149	19.149	0								0	0	0	0.93717	1	6422	6422		13.042	3.6593	1		+		13251	12255	7858	7902	12716	12716					0.04370323240414109
GVFTIPPSFA	10	Unmodified	_GVFTIPPSFA_					0	0	0		CON__Q1RMK2	CON__Q1RMK2	CON__Q1RMK2	MSMS	HCT116MG_D190212_S4	4	518.2807006835938	2	518.279118	1034.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.649	1	31.279	30.779	31.779	-0.37026								0	0	0	0.92607	1	11495	11495		10.074	2.1638	1			+	13252	569	7859	7903	12717	12717					0.027792420743253388
GVFTQYHKKRK	11	Unmodified	_GVFTQYHKKRK_					0	0	0		KDM4D|p.K93Rfs*4|2|0.41|ENSG00000186280|chr11:94997643-94997643|A/-|frameshift_variant	KDM4D|p.K93Rfs*4|2|0.41|ENSG00000186280|chr11:94997643-94997643|A/-|frameshift_variant	KDM4D|p.K93Rfs*4|2|0.41|ENSG00000186280|chr11:94997643-94997643|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	696.4016723632812	2	696.398953	1390.78335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.813	1	40.813	40.313	41.313	0								0	0	0	0.93295	1	15351	15351		15.248	0.8431	1				13253	9258	7860	7904	12718	12718					0.10359236745330236
GVFTQYHKKRK	11	Unmodified	_GVFTQYHKKRK_					0	0	0		KDM4D|p.K93Rfs*4|2|0.41|ENSG00000186280|chr11:94997643-94997643|A/-|frameshift_variant	KDM4D|p.K93Rfs*4|2|0.41|ENSG00000186280|chr11:94997643-94997643|A/-|frameshift_variant	KDM4D|p.K93Rfs*4|2|0.41|ENSG00000186280|chr11:94997643-94997643|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	696.4015502929688	2	696.398953	1390.78335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.837	1	40.837	40.337	41.337	0								0	0	0	0.92983	1	15360	15360		16.149	7.4037	1				13254	9258	7860	7904	12719	12719					0.10359236745330236
GVFVLVTK	8	Unmodified	_GVFVLVTK_					0	0	0			REV__ENSG00000126010|ENST00000380289|GRPR	REV__ENSG00000126010|ENST00000380289|GRPR	MULTI-MSMS	HCT116MG_D190212_S2	2	862.541259765625	1	862.539666	861.53239	0.83993	0.00072447	-1.2454	-0.0010742	-0.40549	-0.00034975	862.5391499880707	60.991	0.93454	60.842	60.579	61.513	-0.14852					33	17	3	0	0	0	0.86388	1	23612	23612		2.8892	0.58649	1	30634000	+		13255	11831	7861	7905	12720	12720					0.09608464770860792
GVGAKSEK	8	Unmodified	_GVGAKSEK_					0	0	0			REV__ENSG00000277531|ENST00000617053|PNMA8C	REV__ENSG00000277531|ENST00000617053|PNMA8C	MSMS	HCT116MG_D190212_S4	4	388.2174377441406	2	388.21906	774.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.268	1	25.967	25.467	26.467	-0.30087								0	0	0	0.8837	1	9349	9349		6.3541	1.1234	1		+		13256	14464	7862	7906	12721	12721					0.027332538005680362
GVGCPYAW	8	Unmodified	_GVGCPYAW_					0	0	0		ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	852.3709716796875	1	852.370886	851.36361	0.60183	0.00051298	0.073294	6.2473E-05	0.67512	0.00057545	852.3708072871967	14.733	0.2087	14.414	14.296	14.505	-0.31952					5	3	2	0	0	0	0.87576	1	4858	4858		0.79363	0	1	929460			13257	8723	7863	7907	12722	12722					-0.0680176013432856
GVGCPYAW	8	Unmodified	_GVGCPYAW_					0	0	0		ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	852.370849609375	1	852.370886	851.36361	0.61698	0.0005259	-0.37733	-0.00032163	0.23965	0.00020427	852.3708822135434	15.715	0.26113	15.38	15.219	15.48	-0.33451					8	4	2	0	0	0	0.86388	1	5238	5238		2.8892	0	1	4016900			13258	8723	7863	7907	12723	12723					-0.0680176013432856
GVGCPYAW	8	Unmodified	_GVGCPYAW_					0	0	0		ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	852.3712158203125	1	852.370886	851.36361	0.64627	0.00055086	-0.14351	-0.00012232	0.50276	0.00042854	852.3703487326567	16.126	0.57191	16.211	16.029	16.601	0.085424					19	10	3	0	0	0	0.87576	1	5298	5298		0.79363	0	1	8376100			13259	8723	7863	7907	12724	12724					-0.0680176013432856
GVGCPYAW	8	Unmodified	_GVGCPYAW_					0	0	0		ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	ENST00000545893.5_1_17:38345052-38350037:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	852.3687133789062	1	852.370886	851.36361	0.59345	0.00050584	-0.34941	-0.00029783	0.24403	0.00020801	852.3704874599786	16.738	0.41619	16.823	16.6	17.016	0.084467					10	7	2	0	0	0	0.87576	1	5488	5488		0.79363	0	1	1495600			13260	8723	7863	7907	12725	12725					-0.0680176013432856
GVGDVCVG	8	Unmodified	_GVGDVCVG_					0	0	0			REV__ENSG00000187122|ENST00000266058|SLIT1	REV__ENSG00000187122|ENST00000266058|SLIT1	MULTI-MSMS	HCT116MG_D190212_S3	3	705.3247680664062	1	705.323602	704.316325	0.86055	0.00060697	1.4576	0.0010281	2.3182	0.0016351	705.3245862445466	44.041	0.26034	43.735	43.605	43.865	-0.30616					7	4	2	0	0	0	0.84415	1	16454	16454		6.3541	0.59368	1	6536500	+		13261	13915	7864	7908	12726	12726					-0.0476603940530822
GVGGGRGGGG	10	Unmodified	_GVGGGRGGGG_					0	0	0			REV__ENSG00000168509|ENST00000336751|HJV	REV__ENSG00000168509|ENST00000336751|HJV	MULTI-SECPEP	HCT116MG_D190212_S3	3	730.0208129882812	1	730.359076	729.351799	0.71646	0.00052328	0.016862	1.2315E-05	0.73333	0.00053559	730.3588248750581	44.456	0.6452	44.149	43.708	44.353	-0.30759					24	13	2	0	0	0	0.3111	1	16526	16526		3.9444	0	1	46653000	+		13262	13204	7865	7909	12727	12727					-0.02370240833272419
GVGGGRGGGG	10	Unmodified	_GVGGGRGGGG_					0	0	0			REV__ENSG00000168509|ENST00000336751|HJV	REV__ENSG00000168509|ENST00000336751|HJV	MULTI-SECPEP	HCT116MG_D190212_S4	4	730.0225219726562	1	730.359076	729.351799	0.82188	0.00060027	0.50657	0.00036998	1.3284	0.00097024	730.3589768894219	44.516	0.89271	44.143	43.468	44.361	-0.37329					28	20	3	0	0	0	0.31019	1	16396	16396		3.5965	0	1	33555000	+		13263	13204	7865	7909	12728	12728					-0.02370240833272419
GVGGGRKL	8	Unmodified	_GVGGGRKL_					0	0	0			REV__ENSG00000169992|ENST00000302926|NLGN2	REV__ENSG00000169992|ENST00000302926|NLGN2	MSMS	HCT116MG_D190212_S4	4	372.22796630859375	2	372.229762	742.444972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.14	1	58.863	58.363	59.363	-0.27731								0	0	0	0.8837	1	22248	22248		2.8892	2.0956	1		+		13264	13273	7866	7910	12729	12729					0.06344683619954594
GVGGPGGF	8	Unmodified	_GVGGPGGF_					0	0	0			REV__KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant	REV__KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	648.3160400390625	1	647.314751	646.307475	0.5827	0.00037719	-0.97203	-0.00062921	-0.38934	-0.00025202	647.3150256360503	19.504	0.31248	19.504	19.287	19.6	0					6	5	2	0	0	0	0.87576	1	6770	6770		0.79363	0	1	1281900	+	+	13265	10260	7867	7911	12730	12730					-0.029826449794882137
GVGHKNPV	8	Unmodified	_GVGHKNPV_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	404.2275695800781	2	404.22722	806.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.855	1	41.855	41.355	42.355	0								0	0	0	0.8837	1	15771	15771		2.8892	0.31174	1		+		13266	17855	7868	7912	12731	12731					0.02892379757327035
GVGHVPGR	8	Unmodified	_GVGHVPGR_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	HCT116MG_D190212_S4	4	389.7197570800781	2	389.719562	777.42457	0.24144	9.4095E-05	0.098021	3.8201E-05	0.33946	0.0001323	389.71947332661597	24.532	0.36314	24.263	24.03	24.393	-0.26881					9	6	2	0	0	0	0.73076	1	8673	8673		19.439	0	1	2343300	+		13267	12507	7869	7913	12732	12732					0.02695512960144697
GVGIPHMH	8	Unmodified	_GVGIPHMH_					0	0	0		CSNK1A1L|p.Q231Tfs*4|1|0.27|ENSG00000180138|chr13:37104566-37104567|-/T|frameshift_variant;ENSG00000180138|ENST00000379800|CSNK1A1L	CSNK1A1L|p.Q231Tfs*4|1|0.27|ENSG00000180138|chr13:37104566-37104567|-/T|frameshift_variant	CSNK1A1L|p.Q231Tfs*4|1|0.27|ENSG00000180138|chr13:37104566-37104567|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	424.217529296875	2	424.215798	846.417042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.894	1	26.582	26.082	27.082	-0.3114								0	0	0	0.8837	1	9602	9602		6.3541	1.5981	1				13268	608	7870	7914	12733	12733					-0.012309626318028677
GVGIRNRP	8	Unmodified	_GVGIRNRP_					0	0	0			REV__ENSG00000079999|ENST00000171111|KEAP1	REV__ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	868.5112915039062	1	868.51116	867.503883	0.75822	0.00065853	-0.078243	-6.7955E-05	0.67998	0.00059057	868.5109725711524	45.373	0.31147	45.373	45.244	45.555	0					10	5	3	0	0	0	0.84415	1	17215	17215		6.3541	1.5981	1	25185000	+		13269	10855	7871	7915	12734	12734					0.06483159914273529
GVGIRNRP	8	Unmodified	_GVGIRNRP_					0	0	0			REV__ENSG00000079999|ENST00000171111|KEAP1	REV__ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	434.7591857910156	2	434.759218	867.503883	-0.026249	-1.1412E-05	0.17691	7.6912E-05	0.15066	6.55E-05	434.75922205714363	49.184	0.87932	49.184	48.819	49.699	0					28	16	3	0	0	0	0.86388	1	18692	18692		2.8892	0.58649	1	54666000	+		13270	10855	7871	7915	12735	12735					0.06483159914273529
GVGIRNRP	8	Unmodified	_GVGIRNRP_					0	0	0			REV__ENSG00000079999|ENST00000171111|KEAP1	REV__ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	HCT116MG_D190212_S1	1	435.2512512207031	2	434.759218	867.503883	-0.097969	-4.2593E-05	-2.0381	-0.0008861	-2.1361	-0.0009287	434.75938314464184	49.955	0.4636	49.955	49.75	50.214	0					13	8	3	0	0	0	0.33364	1	19117	19117		0.79363	0.10326	1	9875300	+		13271	10855	7871	7915	12736	12736					0.06483159914273529
GVGIRNRP	8	Unmodified	_GVGIRNRP_					0	0	0			REV__ENSG00000079999|ENST00000171111|KEAP1	REV__ENSG00000079999|ENST00000171111|KEAP1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	434.759218	867.503883	0.07459	3.2429E-05	-0.078262	-3.4025E-05	-0.0036726	-1.5967E-06	434.7591005626875	50.133	0.7298	49.818	49.498	50.228	-0.31524	-0.021329	0.00016888	NaN	0.79363	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2913300	+		13272	10855	7871	7915							0.06483159914273529
GVGIRVGTFL	10	Unmodified	_GVGIRVGTFL_					0	0	0			REV__ENST00000531346.1_1_11:120196007-120201221:+|nuORF	REV__ENST00000531346.1_1_11:120196007-120201221:+|nuORF	MSMS	HCT116MG_D190212_S1	1	509.8041076660156	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.997	1	52.997	52.497	53.497	0								0	0	0	0.92607	1	20285	20285		10.074	4.8433	1		+		13273	13684	7872	7916	12737	12737					0.08902039576844345
GVGIVKSL	8	Unmodified	_GVGIVKSL_					0	0	0			REV__tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	REV__tr|U7SUB9|U7SUB9_FUSNUROKfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01370PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	386.74993896484375	2	386.749996	771.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.058	1	40.99	40.49	41.49	-0.068779								0	0	0	0.54805	1	15502	15502		40.449	0.49126	1		+		13274	17825	7873	7917	12738	12738					0.0905560521971438
GVGKGGQP	8	Unmodified	_GVGKGGQP_					0	0	0		nc|ENSG00000095397|Q9P202-2|WHRN	nc|ENSG00000095397|Q9P202-2|WHRN	nc|ENSG00000095397|Q9P202-2|WHRN	MSMS	HCT116MG_D190212_S3	3	350.1942138671875	2	350.192845	698.371138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.155	1	47.839	47.339	48.339	-0.31596								0	0	0	0.8837	1	18104	18104		5.7604	2.8712	1				13275	9401	7874	7918	12739	12739					0.009887154576176727
GVGLKLKTFY	10	Unmodified	_GVGLKLKTFY_					0	0	0		ENST00000563328.4_1_16:72822707-72822839:+|nuORF	ENST00000563328.4_1_16:72822707-72822839:+|nuORF	ENST00000563328.4_1_16:72822707-72822839:+|nuORF	MSMS	HCT116MG_D190212_S3	3	563.2154541015625	2	563.336967	1124.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.896	1	39.595	39.095	40.095	-0.30137								0	0	0	0.96291	1	14796	14796		1.8442	0.19162	1				13276	8833	7875	7919	12740	12740					0.10203765925166408
GVGLQRAENE	10	Unmodified	_GVGLQRAENE_					0	0	0			REV__CCDC174|p.K303Rfs*2|1|0.27|ENSG00000154781|chr3:14668131-14668131|A/-|frameshift_variant	REV__CCDC174|p.K303Rfs*2|1|0.27|ENSG00000154781|chr3:14668131-14668131|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	536.773681640625	2	536.772719	1071.53089	0.3118	0.00016737	1.256	0.0006742	1.5678	0.00084157	536.773483157555	40.002	0.31021	39.7	39.645	39.955	-0.30137					8	6	2	0	0	0	0.71349	1	14859	14859		19.257	2.1441	1	3350500	+		13277	10113	7876	7920	12741	12741					-0.002018210558617284
GVGLQRAENE	10	Unmodified	_GVGLQRAENE_					0	0	0			REV__CCDC174|p.K303Rfs*2|1|0.27|ENSG00000154781|chr3:14668131-14668131|A/-|frameshift_variant	REV__CCDC174|p.K303Rfs*2|1|0.27|ENSG00000154781|chr3:14668131-14668131|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	536.772719	1071.53089	0.36036	0.00019343	1.3925	0.00074745	1.7529	0.00094089	536.7736873809176	39.658	0.30576	39.58	39.428	39.734	-0.077835	-0.060089	0.00011761	NaN	19.257	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11039000	+		13278	10113	7876	7920							-0.002018210558617284
GVGLRERL	8	Unmodified	_GVGLRERL_					0	0	0			REV__ENST00000496583.1_1_19:54695101-54695536:+|nuORF	REV__ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	450.2747802734375	2	450.274701	898.534849	0.037543	1.6905E-05	0.22223	0.00010006	0.25977	0.00011697	450.27470473337695	50.81	1.4639	50.496	50.125	51.589	-0.31381					75	27	4	0	0	0	0.86388	1	19105	19105		2.8892	0.58649	1	95915000	+		13279	13322	7877	7921	12742	12742					0.08152313228504227
GVGLRNERRV	10	Unmodified	_GVGLRNERRV_					0	0	0			REV__ENST00000482343.5_1_1:149901475-149902499:-|nuORF	REV__ENST00000482343.5_1_1:149901475-149902499:-|nuORF	MSMS	HCT116MG_D190212_S4	4	578.3385620117188	2	578.338895	1154.66324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.108	1	43.734	43.234	44.234	-0.37373								0	0	0	0.96291	1	16238	16238		1.8442	0.19162	1		+		13280	15963	7878	7922	12743	12743					0.09209248471574938
GVGLRRPRPV	10	Unmodified	_GVGLRRPRPV_					0	0	0			REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3	REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3	MULTI-MSMS	HCT116MG_D190212_S4	4	553.8485107421875	2	553.848899	1105.68324	0.60932	0.00033747	-0.91225	-0.00050525	-0.30292	-0.00016777	553.8482282237745	56.759	0.31288	56.459	56.258	56.571	-0.30039					8	5	2	0	0	0	0.87641	1	21286	21286		4.3292	2.2695	1	974630	+		13281	11001	7879	7923	12744	12744					0.13463044202217134
GVGLRRTA	8	Unmodified	_GVGLRRTA_					0	0	0			REV__nc|ENSG00000178149|Q5D0E6-3|DALRD3	REV__nc|ENSG00000178149|Q5D0E6-3|DALRD3	MSMS	HCT116MG_D190212_S2	2	415.2536926269531	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.52	1	37.417	36.917	37.917	-0.10318								0	0	0	0.8837	1	14066	14066		2.8892	0	1		+		13282	13597	7880	7924	12745	12745					0.07187757539975337
GVGLSALLV	9	Unmodified	_GVGLSALLV_					0	0	0			REV__ENSG00000159348|ENST00000367249|CYB5R1	REV__ENSG00000159348|ENST00000367249|CYB5R1	MSMS	HCT116MG_D190212_S3	3	414.7618103027344	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.244	1	53.948	53.448	54.448	-0.29633								0	0	0	0.7689	1	20550	20550		4.756	0	1		+		13283	12802	7881	7925	12746	12746					0.09099874391176854
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	443.7644958496094	2	443.764501	885.514448	-0.053246	-2.3629E-05	0.39861	0.00017689	0.34537	0.00015326	443.7646021798379	42.926	1.5052	42.926	42.019	43.524	0					62	28	3	0	0	0	0.86564	1	16246	16246		2.5775	0	1	38400000			13284	7152	7882	7926	12747	12747					0.06711142568701689
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MSMS	HCT116MG_D190212_S3	3	443.7650451660156	2	443.764501	885.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.119	1	50.808	50.308	51.308	-0.31166								0	0	0	0.8837	1	19294	19294		5.7604	0.52976	1				13285	7152	7882	7926	12748	12748					0.06711142568701689
GVGLTQRR	8	Unmodified	_GVGLTQRR_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	443.27276611328125	2	443.764501	885.514448	0.22706	0.00010076	0.11734	5.2072E-05	0.3444	0.00015283	443.7644339189579	51.02	1.0883	50.665	50.005	51.093	-0.35483					36	20	3	0	0	0	0.33364	1	18759	18759		0.79363	0	1	6567000			13286	7152	7882	7926	12749	12749					0.06711142568701689
GVGLVAAIV	9	Unmodified	_GVGLVAAIV_					0	0	0			REV__ENST00000398988.7_2_17:25950782-25950866:+|nuORF	REV__ENST00000398988.7_2_17:25950782-25950866:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	798.505859375	1	798.508366	797.501089	0.77948	0.00062242	-2.2331	-0.0017832	-1.4537	-0.0011608	798.5062662966833	51.73	0.25769	51.73	51.549	51.807	0					7	4	2	0	0	0	0.7005	1	19785	19785		5.2307	0	1	13331000	+		13287	15385	7883	7927	12750	12750					0.09423891736742007
GVGLVAAIV	9	Unmodified	_GVGLVAAIV_					0	0	0			REV__ENST00000398988.7_2_17:25950782-25950866:+|nuORF	REV__ENST00000398988.7_2_17:25950782-25950866:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	798.508366	797.501089	0.77948	0.00062242	-2.2331	-0.0017832	-1.4537	-0.0011608	798.5062662966833	51.73	0.25769	51.73	51.549	51.807	0	-0.022872	0.00050815	NaN	5.2307	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13331000	+		13288	15385	7883	7927							0.09423891736742007
GVGLVAAIV	9	Unmodified	_GVGLVAAIV_					0	0	0			REV__ENST00000398988.7_2_17:25950782-25950866:+|nuORF	REV__ENST00000398988.7_2_17:25950782-25950866:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	798.508366	797.501089	1.0735	0.00085722	-3.2868	-0.0026245	-2.2133	-0.0017673	798.5057193889029	51.959	0.20654	51.775	51.68	51.887	-0.18369	0.022872	-0.00033322	NaN	5.2307	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8285000	+		13289	15385	7883	7927							0.09423891736742007
GVGNVGAK	8	Unmodified	_GVGNVGAK_					0	0	0			REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	701.3932495117188	1	701.394064	700.386788	0.63896	0.00044816	-1.6992	-0.0011918	-1.0602	-0.00074362	701.392631208637	43.91	0.3069	43.91	43.73	44.036	0					8	5	2	0	0	0	0.86388	1	16603	16603		2.8892	0.58649	1	64713000	+		13290	17929	7884	7928	12751	12751					0.024610019746660328
GVGPFRAGP	9	Unmodified	_GVGPFRAGP_					0	0	0			REV__ELN|p.G197Dfs*126|1|0.19|ENSG00000049540|chr7:74046710-74046710|G/-|frameshift_variant	REV__ELN|p.G197Dfs*126|1|0.19|ENSG00000049540|chr7:74046710-74046710|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	429.0887145996094	2	429.235045	856.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.18	1	25.074	24.574	25.574	-0.10618								0	0	0	0.76611	1	8978	8978		14.582	3.4672	1		+		13291	10453	7885	7929	12752	12752					0.02156666274379404
GVGPGPGRRKL	11	Unmodified	_GVGPGPGRRKL_					0	0	0		ENST00000590966.1_1_17:68165378-68165540:-|nuORF	ENST00000590966.1_1_17:68165378-68165540:-|nuORF	ENST00000590966.1_1_17:68165378-68165540:-|nuORF	MSMS	HCT116MG_D190212_S4	4	547.3326416015625	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.322	1	49.964	49.464	50.464	-0.35878								0	0	0	0.95521	1	18693	18693		3.5965	0	1				13292	9031	7886	7930	12753	12753					0.10899051448268438
GVGRGRRPRR	10	Unmodified	_GVGRGRRPRR_					0	0	0			REV__ENST00000335154.9_1_12:50100981-50101167:-|nuORF	REV__ENST00000335154.9_1_12:50100981-50101167:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	584.3604736328125	2	583.858121	1165.70169	0.62917	0.00036734	0.5733	0.00033473	1.2025	0.00070207	583.8586768923341	52.501	1.0323	52.314	51.883	52.915	-0.18725					42	19	3	0	0	0	0.87801	1	20293	20293		3.9444	0.66309	1	33205000	+		13293	14946	7887	7931	12754	12754					0.1254659889677896
GVGTTGLVK	9	Unmodified	_GVGTTGLVK_					0	0	0			REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	MSMS	HCT116MG_D190212_S1	1	416.24908447265625	2	416.25036	830.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.425	1	34.425	33.925	34.925	0								0	0	0	0.76967	1	12772	12772		2.0598	1.2661	1		+		13294	16544	7888	7932	12755	12755					0.06414399868754117
GVGVGHRL	8	Unmodified	_GVGVGHRL_					0	0	0			REV__ENST00000253814.5_1_5:141488514-141511380:+|nuORF	REV__ENST00000253814.5_1_5:141488514-141511380:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	398.2299499511719	2	397.735212	793.455871	0.064861	2.5798E-05	-3.0868	-0.0012277	-3.0219	-0.0012019	397.7326494158703	43.712	0.14834	43.338	43.267	43.415	-0.37433					4	2	2	0	0	0	0.33364	1	16053	16053		0.79363	0	1	898610	+		13295	14597	7889	7933	12756	12756					0.05088085994213998
GVGWNAGE	8	Unmodified	_GVGWNAGE_					0	0	0		ENST00000561824.5_1_16:30205810-30208337:+|nuORF;ENST00000568997.5_1_16:30205663-30206113:+|nuORF	ENST00000561824.5_1_16:30205810-30208337:+|nuORF	ENST00000561824.5_1_16:30205810-30208337:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	789.3524169921875	1	789.352594	788.345317	0.85965	0.00067857	-0.085222	-6.7271E-05	0.77443	0.0006113	789.3523757086846	28.465	0.8835	28.134	27.596	28.479	-0.33138					27	16	2	0	0	0	0.78216	1	10097	10097		13.508	5.5977	1	3437000			13296	8819	7890	7934	12757	12757					-0.0573217878467176
GVHAHETPR	9	Unmodified	_GVHAHETPR_					0	0	0			REV__ENST00000394224.3_1_11:65407601-65408454:+|nuORF	REV__ENST00000394224.3_1_11:65407601-65408454:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	502.75799560546875	2	502.25704	1002.49953	0.30514	0.00015326	-0.88919	-0.0004466	-0.58404	-0.00029334	502.256474368833	10.506	0.27651	10.233	10.083	10.36	-0.27365					13	12	2	0	0	0	0.74258	1	3325	3325		2.3027	0.4585	1	234720	+		13297	15335	7891	7935	12758	12758					-0.0016234929928486963
GVHAHETPR	9	Unmodified	_GVHAHETPR_					0	0	0			REV__ENST00000394224.3_1_11:65407601-65408454:+|nuORF	REV__ENST00000394224.3_1_11:65407601-65408454:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	502.75799560546875	2	502.25704	1002.49953	0.30514	0.00015326	-0.88919	-0.0004466	-0.58404	-0.00029334	502.256474368833	10.506	0.27651	10.233	10.083	10.36	-0.27365					13	12	2	0	0	0	0.26911	1	3325	3325		2.3027	0.4585	1	234720	+		13298	15335	7891	7935	12759	12759					-0.0016234929928486963
GVHAKHPK	8	Unmodified	_GVHAKHPK_					0	0	0			REV__nc|ENSG00000119242|Q53HC0-2|CCDC92	REV__nc|ENSG00000119242|Q53HC0-2|CCDC92	MSMS	HCT116MG_D190212_S2	2	437.2579040527344	2	437.256311	872.49807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.544	1	9.2889	8.7889	9.7889	-0.25508								0	0	0	0.8837	1	2986	2986		2.5775	1.7838	1		+		13299	11652	7892	7936	12760	12760					0.05672061402606232
GVHALLRKL	9	Unmodified	_GVHALLRKL_					0	0	0		ENSG00000149823|ENST00000279281|VPS51;nc|ENSG00000149823|Q9UID3-2|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	HCT116MG_D190212_S2	2	503.8295593261719	2	503.829643	1005.64473	0.52621	0.00026512	0.097955	4.9352E-05	0.62416	0.00031447	503.8294307386089	60.62	1.2423	60.471	60.115	61.358	-0.14852					49	23	3	0	0	0	0.74607	1	23650	23650		2.0598	0.21551	1	38766000			13300	4074	7893	7937	12761	12761					0.14213738567696055
GVHELLLTVI	10	Unmodified	_GVHELLLTVI_					0	0	0		ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2;ADGRL2|p.R873Pfs*6|1|0.17|ENSG00000117114|chr1:81969276-81969277|-/T|frameshift_variant;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2	ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant	ADGRL2|p.N1313Kfs*37|1|0.3|ENSG00000117114|chr1:81990701-81990702|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	547.3333740234375	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.515	1	59.256	58.756	59.756	-0.25832								0	0	0	0.96291	1	22666	22666		1.8442	0.19162	1				13301	61	7894	7938	12762	12762					0.11167462062553568
GVHGANFA	8	Unmodified	_GVHGANFA_					0	0	0		tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	tr|U7SNS5|U7SNS5_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01742PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	386.68963623046875	2	386.69047	771.366387	-0.93344	-0.00036095	-0.59186	-0.00022887	-1.5253	-0.00058982	386.6898667803258	38.323	0.20866	38.323	38.227	38.436	0					6	3	2	0	0	0	0.87576	1	14375	14375		0.79363	0	1	3756500			13302	18370	7895	7939	12763	12763					-0.028441686851579107
GVHGTSYGK	9	Unmodified	_GVHGTSYGK_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	HCT116MG_D190212_S2	2	453.5860595703125	2	453.227417	904.44028	0.40651	0.00018424	-0.35329	-0.00016012	0.053215	2.4118E-05	453.2269948522494	27.43	0.25779	27.088	26.881	27.139	-0.34201					7	4	2	0	0	0	0.60612	1	9879	9879		10.824	0.75	1	17930000			13303	1103	7896	7940	12764	12764					-0.01576245313481195
GVHKKPLF	8	Unmodified	_GVHKKPLF_					0	0	0		ENSG00000111961|ENST00000367467|SASH1;SASH1|p.N810Tfs*48|1|0.29|ENSG00000111961|chr6:148543895-148543895|A/-|frameshift_variant	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MSMS	HCT116MG_D190212_S4	4	463.61798095703125	2	463.284537	924.554522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.488	1	52.148	51.648	52.648	-0.34023								0	0	0	0.8837	1	19568	19568		2.8892	0.31174	1				13304	2324	7897	7941	12765	12765					0.0892268923927304
GVHNEVFRIY	10	Unmodified	_GVHNEVFRIY_					0	0	0			REV__TTYH3-ADSSL1|1|fusion	REV__TTYH3-ADSSL1|1|fusion	MULTI-MSMS	HCT116MG_D190212_S1	1	1233.6368408203125	1	1233.63748	1232.63021	0.71796	0.0008857	-1.411	-0.0017406	-0.69303	-0.00085494	1233.6355481990647	52.716	0.25774	52.716	52.536	52.794	0					8	4	2	0	0	0	0.6277	1	20179	20179		26.268	1.2772	1	24397000	+		13305	13828	7898	7942	12766	12766					0.023196216288852156
GVHNTVTPP	9	Unmodified	_GVHNTVTPP_					0	0	0			REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L	REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L	MULTI-MSMS	HCT116MG_D190212_S3	3	461.2431640625	2	461.243067	920.47158	0.30483	0.0001406	0.062629	2.8887E-05	0.36746	0.00016949	461.2430268724822	20.323	1.1976	20.371	19.791	20.988	0.048107					37	22	2	0	0	0	0.41514	2	6915	6915;7183		21.747	3.6003	1	4781200	+		13306	13052	7899	7943	12767;12768	12767					0.00816327720622212
GVHRFTSKK	9	Unmodified	_GVHRFTSKK_					0	0	0			REV__ENSG00000070366|ENST00000263073|SMG6	REV__ENSG00000070366|ENST00000263073|SMG6	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.3173828125	2	530.306532	1058.59851	0.30271	0.00016053	-1.0252	-0.00054369	-0.72254	-0.00038317	530.3059689641963	12.359	0.11838	12.069	11.982	12.101	-0.28953					7	5	2	0	0	0	0.26961	1	4019	4019		1.8442	0.19162	1	175420	+		13307	10753	7900	7944	12769	12769					0.0715567366560208
GVHRGFGRRRR	11	Unmodified	_GVHRGFGRRRR_					0	0	0			REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	REV__ENST00000283429.10_1_16:4524572-4524719:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	677.395263671875	2	677.395402	1352.77625	0.74399	0.00050398	-0.11756	-7.9633E-05	0.62643	0.00042434	677.3952079098644	53.923	1.6661	53.594	52.624	54.291	-0.32923					81	31	3	0	0	0	0.74191	1	19906	19906		1.3295	1.3295	1	19342000	+		13308	14726	7901	7945	12770	12770					0.11397361708145581
GVHRGIGT	8	Unmodified	_GVHRGIGT_					0	0	0			REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	MSMS	HCT116MG_D190212_S4	4	398.726318359375	2	398.724844	795.435135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.384	1	14.223	13.723	14.723	-0.16089								0	0	0	0.8837	1	4551	4551		0.79363	0	1		+		13309	11929	7902	7946	12771	12771					0.02923495614584226
GVHTIDVKFN	10	Unmodified	_GVHTIDVKFN_					0	0	0		ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;ENST00000475487.1_1_3:58141790-58149086:+|nuORF	ENST00000481470.5_1_3:58118395-58154450:+|nuORF	ENST00000481470.5_1_3:58118395-58154450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	377.2048034667969	3	377.204862	1128.59276	-0.17004	-6.4141E-05	0.043811	1.6526E-05	-0.12623	-4.7616E-05	377.20479280336684	23.549	0.20874	23.549	23.418	23.627	0					6	3	2	0	0	0	0.60826	1	8394	8394		18.721	1.1493	1	18909000			13310	3394	7903	7947	12772	12772					0.03360530363283942
GVHTVHLG	8	Unmodified	_GVHTVHLG_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS	ENSG00000188107|ENST00000503581|EYS	ENSG00000188107|ENST00000503581|EYS	MSMS	HCT116MG_D190212_S1	1	410.22869873046875	2	410.22722	818.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.267	1	23.267	22.767	23.767	0								0	0	0	0.8837	1	8278	8278		5.7604	0	1				13311	5969	7904	7948	12773	12773					0.023403797573337215
GVIDAERPAGP	11	Unmodified	_GVIDAERPAGP_					0	0	0			REV__SYNE4|p.G89Afs*14|1|0.26|ENSG00000181392|chr19:36008230-36008230|C/-|frameshift_variant	REV__SYNE4|p.G89Afs*14|1|0.26|ENSG00000181392|chr19:36008230-36008230|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	541.2860107421875	2	541.285463	1080.55637	0.50331	0.00027244	-0.053453	-2.8933E-05	0.44986	0.0002435	541.2855906946508	27.009	0.72888	26.84	26.391	27.12	-0.16933					18	13	2	0	0	0	0.71614	1	9791	9791		15.847	1.4418	1	3382700	+		13312	13688	7905	7949	12774	12774					0.019316534665676954
GVIDRNISL	9	Unmodified	_GVIDRNISL_					0	0	0			REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	MULTI-SECPEP	HCT116MG_D190212_S1	1	493.8034362792969	2	493.785099	985.555644	0.1175	5.8019E-05	0.95654	0.00047233	1.074	0.00053035	493.785082298023	42.357	0.20833	42.357	42.226	42.435	0					5	3	2	0	0	0	0.14956	1	15961	15961		32.305	0	1	8044200	+		13313	11504	7906	7950	12775	12775					0.06228858817530636
GVIGEVGPPS	10	Unmodified	_GVIGEVGPPS_					0	0	0			REV__MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant	REV__MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	456.2452392578125	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.655	1	50.341	49.841	50.841	-0.31381								0	0	0	0.82636	1	19107	19107		25.399	2.2509	1		+		13314	11248	7907	7951	12776	12776					0.017177921435290955
GVIGEVGPPS	10	Unmodified	_GVIGEVGPPS_					0	0	0			REV__MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant	REV__MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	456.2453308105469	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.563	1	50.206	49.706	50.706	-0.35714								0	0	0	0.80241	1	18790	18790		28.487	1.6032	1		+		13315	11248	7907	7951	12777	12777					0.017177921435290955
GVIGGLGLAF	10	Unmodified	_GVIGGLGLAF_					0	0	0		SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	452.2669677734375	2	452.268553	902.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.703	1	52.363	51.863	52.863	-0.34023								0	0	0	0.95179	1	19655	19655		4.3292	1.7518	1				13316	4250	7908	7952	12778	12778					0.06739276765461
GVIGLKMSI	9	Unmodified	_GVIGLKMSI_					0	0	0			REV__ENST00000519889.5_1_8:95905124-95906171:-|nuORF	REV__ENST00000519889.5_1_8:95905124-95906171:-|nuORF	MSMS	HCT116MG_D190212_S2	2	459.2796325683594	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.574	1	53.385	52.885	53.885	-0.1894								0	0	0	0.7689	1	20606	20606		4.756	2.1785	1		+		13317	10122	7909	7953	12779	12779					0.07996490064874706
GVIHNAGP	8	Unmodified	_GVIHNAGP_					0	0	0			REV__INSRR|p.T379Rfs*91|1|0.17|ENSG00000027644|chr1:156851382-156851383|AG/-|frameshift_variant	REV__INSRR|p.T379Rfs*91|1|0.17|ENSG00000027644|chr1:156851382-156851383|AG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	382.7416687011719	2	382.70612	763.397687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.371	1	15.456	14.956	15.956	0.084364								0	0	0	0.8837	1	5024	5024		6.3541	0	1		+		13318	10567	7910	7954	12780	12780					0.006524043489434916
GVILNEYRVHR	11	Unmodified	_GVILNEYRVHR_					0	0	0			REV__SLC25A32|p.A28V|1|0.33|ENSG00000164933|chr8:103414855-103414855|G/A|missense_variant	REV__SLC25A32|p.A28V|1|0.33|ENSG00000164933|chr8:103414855-103414855|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	678.382568359375	2	678.38076	1354.74697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.193	1	39.116	38.616	39.616	-0.077835								0	0	0	0.94416	1	14743	14743		9.3831	0.63772	1		+		13319	17522	7911	7955	12781	12781					0.08378359848643413
GVILPIWYP	9	Unmodified	_GVILPIWYP_					0	0	0		nc|ENSG00000100678|P57103-3|SLC8A3;ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3	nc|ENSG00000100678|P57103-3|SLC8A3	nc|ENSG00000100678|P57103-3|SLC8A3	MSMS	HCT116MG_D190212_S1	1	353.2173156738281	3	353.207544	1056.6008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.848	1	29.848	29.348	30.348	0								0	0	0	0.76877	1	10925	10925		2.9952	1.5401	1				13320	1726	7912	7956	12782	12782					0.07476709350703459
GVILTVSPTG	10	Unmodified	_GVILTVSPTG_					0	0	0			REV__ENSG00000135298|ENST00000370598|ADGRB3	REV__ENSG00000135298|ENST00000370598|ADGRB3	MSMS	HCT116MG_D190212_S4	4	472.27508544921875	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.122	1	29.765	29.265	30.265	-0.3571								0	0	0	0.91906	1	10907	10907		11.64	0.81637	1		+		13321	12083	7913	7957	12783	12783					0.0650293821172454
GVIVNVIYF	9	Unmodified	_GVIVNVIYF_					0	0	0			REV__tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	REV__tr|U7T2Q3|U7T2Q3_FUSNUHrgCproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00418PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	512.2302856445312	2	512.29731	1022.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.727	1	48.411	47.911	48.911	-0.31596								0	0	0	0.76877	1	18335	18335		5.2307	0	1		+		13322	17930	7914	7958	12784	12784					0.0696811897103089
GVIYLGPF	8	Unmodified	_GVIYLGPF_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MSMS	HCT116MG_D190212_S3	3	433.24432373046875	2	433.244547	864.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.675	1	45.364	44.864	45.864	-0.31094								0	0	0	0.86899	1	17108	17108		17.087	5.9721	1		+		13323	10882	7915	7959	12785	12785					0.03688202845421529
GVKAIQAG	8	Unmodified	_GVKAIQAG_					0	0	0			REV__ENSG00000145681|ENST00000274341|HAPLN1	REV__ENSG00000145681|ENST00000274341|HAPLN1	MSMS	HCT116MG_D190212_S4	4	372.5313415527344	2	372.224146	742.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.448	1	28.117	27.617	28.617	-0.33138								0	0	0	0.8837	1	10230	10230		2.8892	0.31174	1		+		13324	12452	7916	7960	12786	12786					0.05221861525797067
GVKELVRLTI	10	Unmodified	_GVKELVRLTI_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MSMS	HCT116MG_D190212_S4	4	564.359130859375	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.603	1	36.219	35.719	36.719	-0.38486								0	0	0	0.95507	1	13401	13401		3.5965	0.60125	1				13325	2109	7917	7961	12787	12787					0.14910839845242663
GVKFREFSLVK	11	Unmodified	_GVKFREFSLVK_					0	0	0			REV__tr|U7SEC4|U7SEC4_FUSNUElongationfactorTsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsfPE=3SV=1	REV__tr|U7SEC4|U7SEC4_FUSNUElongationfactorTsOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tsfPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	437.4587707519531	3	437.259079	1308.75541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7003	1	9.4452	8.9452	9.9452	-0.25508								0	0	0	0.95581	1	3039	3039		1.3296	0	1		+		13326	17657	7918	7962	12788	12788					0.11337913765260055
GVKGGEEI	8	Unmodified	_GVKGGEEI_					0	0	0			REV__ENST00000466177.6_1_2:64331878-64331959:-|nuORF	REV__ENST00000466177.6_1_2:64331878-64331959:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	395.2124938964844	2	394.711068	787.407583	0.30603	0.00012079	-0.39486	-0.00015585	-0.088823	-3.5059E-05	394.7108619530685	33.696	0.24439	33.311	33.169	33.413	-0.38427					6	4	2	0	0	0	0.31097	1	12301	12301		11.64	3.7301	1	1273300	+		13327	15826	7919	7963	12789	12789					0.005375475636697047
GVKGHAGK	8	Unmodified	_GVKGHAGK_					0	0	0		ENSG00000049089|ENST00000372748|COL9A2;ENST00000482722.5_1_1:40766856-40777859:-|nuORF;COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	ENSG00000049089|ENST00000372748|COL9A2	ENSG00000049089|ENST00000372748|COL9A2	MSMS	HCT116MG_D190212_S3	3	377.2209777832031	2	377.221937	752.429321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.6	1	10.64	10.14	11.14	0.039975								0	0	0	0.8837	1	3217	3217		2.5775	1.8871	1				13328	1038	7920	7964	12790	12790					0.04320397102901552
GVKIKLHKI	9	Unmodified	_GVKIKLHKI_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	MSMS	HCT116MG_D190212_S3	3	518.3538818359375	2	518.355494	1034.69644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.187	1	48.871	48.371	49.371	-0.31596								0	0	0	0.77008	1	18516	18516		0.6015	0	1				13329	1460	7921	7965	12791	12791					0.18047482261567893
GVKKKKKKQ	9	Unmodified	_GVKKKKKKQ_					0	0	0			REV__ENST00000454171.1_1_7:84657519-84657798:+|nuORF	REV__ENST00000454171.1_1_7:84657519-84657798:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.1655883789062	2	536.371675	1070.7288	0.53221	0.00028546	-0.24348	-0.0001306	0.28873	0.00015486	536.3714365982703	60.513	1.3446	60.358	60.007	61.352	-0.15441					60	25	3	0	0	0	0.27042	1	23690	23690		0.6015	0.6015	1	35830000	+		13330	15732	7922	7966	12792	12792					0.1962626966460448
GVKKLFIF	8	Unmodified	_GVKKLFIF_					0	0	0		TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant	TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	476.3064270019531	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.84	1	55.552	55.052	56.052	-0.28773								0	0	0	0.8837	1	21185	21185		0.79363	0.10326	1				13331	6681	7923	7967	12793	12793					0.11805030558889484
GVKKLFIF	8	Unmodified	_GVKKLFIF_					0	0	0		TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant	TUBGCP5|p.D713Ifs*5|1|0.18|ENSG00000275835|chr15:23009953-23009953|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	476.30633544921875	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.58	1	57.306	56.806	57.806	-0.27434								0	0	0	0.8837	1	21885	21885		2.8892	2.0956	1				13332	6681	7923	7967	12794	12794					0.11805030558889484
GVKKRRIPR	9	Unmodified	_GVKKRRIPR_					0	0	0		ENSG00000117360|ENST00000324862|PRPF3;PRPF3|p.F311Lfs*69|1|0.18|ENSG00000117360|chr1:150335134-150335134|T/-|frameshift_variant;ENST00000467329.5_1_1:150300781-150316915:+|nuORF	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MSMS	HCT116MG_D190212_S1	1	555.3734741210938	2	555.372541	1108.73053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5046	1	9.5046	9.0046	10.005	0								0	0	0	0.77008	1	2881	2881		0.6015	0.14316	1				13333	2571	7924	7968	12795	12795					0.18051323473218872
GVKPRKPPL	9	Unmodified	_GVKPRKPPL_					0	0	0			REV__ENST00000393313.5_1_7:127032565-127032634:-|nuORF	REV__ENST00000393313.5_1_7:127032565-127032634:-|nuORF	MSMS	HCT116MG_D190212_S3	3	496.3223571777344	2	496.324194	990.633835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.77	1	55.483	54.983	55.983	-0.28773								0	0	0	0.7696	1	21158	21158		2.3027	0.65011	1		+		13334	15326	7925	7969	12796	12796					0.13814336193399868
GVKRAKKA	8	Unmodified	_GVKRAKKA_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MSMS	HCT116MG_D190212_S4	4	429.08868408203125	2	429.287611	856.56067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21	1	20.79	20.29	21.29	-0.20959								0	0	0	0.8837	1	7223	7223		0.79363	0.10326	1		+		13335	12271	7926	7970	12797	12797					0.126652074707863
GVKRQSRT	8	Unmodified	_GVKRQSRT_					0	0	0			REV__nc|ENSG00000103126|O15169-2|AXIN1;REV__ENST00000461023.5_1_16:338124-339729:-|nuORF	REV__nc|ENSG00000103126|O15169-2|AXIN1	MSMS	HCT116MG_D190212_S3	3	466.27545166015625	2	466.275232	930.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.951	1	47.635	47.135	48.135	-0.31596								0	0	0	0.8837	1	18022	18022		2.3027	0	1		+		13336	11176;15778	7927	7971	12798	12798					0.06786527597421355
GVKSIRTRK	9	Unmodified	_GVKSIRTRK_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.K1113Rfs*30|1|0.13|ENSG00000197969|chr9:77283645-77283645|A/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MSMS	HCT116MG_D190212_S3	3	522.8346557617188	2	522.835457	1043.65636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.053	1	41.75	41.25	42.25	-0.30257								0	0	0	0.76978	1	15654	15654		1.6526	0.85899	1				13337	9604	7928	7972	12799	12799					0.13627935591034657
GVKTAEYLTK	10	Unmodified	_GVKTAEYLTK_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|156|3|sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|156|3|sense	MSMS	HCT116MG_D190212_S2	2	555.3146362304688	2	555.313689	1108.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4456	1	6.2711	5.7711	6.7711	-0.17458								0	0	0	0.96453	1	2034	2034		1.4819	0.79152	1		+		13338	16874	7929	7973	12800	12800					0.06286281303209762
GVKVILKKKK	10	Unmodified	_GVKVILKKKK_					0	0	0		nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	nc|ENSG00000198929|O75052-3|NOS1AP	nc|ENSG00000198929|O75052-3|NOS1AP	MSMS	HCT116MG_D190212_S4	4	570.9156494140625	2	570.913176	1139.8118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.941	1	36.556	36.056	37.056	-0.38486								0	0	0	0.96911	1	13538	13538		0.45834	0.45834	1				13339	6301	7930	7974	12801	12801					0.24748586392615834
GVKVLPRRV	9	Unmodified	_GVKVLPRRV_					0	0	0		ENST00000599893.1_1_19:53284204-53290040:-|nuORF	ENST00000599893.1_1_19:53284204-53290040:-|nuORF	ENST00000599893.1_1_19:53284204-53290040:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.3431396484375	2	512.342918	1022.67128	0.32468	0.00016635	0.22944	0.00011755	0.55412	0.0002839	512.3429512753248	60.636	2.3191	60.487	60.013	62.332	-0.14852					94	44	3	0	0	0	0.76704	1	23627	23627		0.6015	0	1	79418000			13340	9083	7931	7975	12802	12802					0.16085427459040602
GVKVTYTVQY	10	Unmodified	_GVKVTYTVQY_					0	0	0		nc|ENSG00000016402|Q9UHF4-3|IL20RA;ENSG00000016402|ENST00000316649|IL20RA	nc|ENSG00000016402|Q9UHF4-3|IL20RA	nc|ENSG00000016402|Q9UHF4-3|IL20RA	MSMS	HCT116MG_D190212_S2	2	579.31396484375	2	579.313689	1156.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.529	1	30.245	29.745	30.745	-0.28453								0	0	0	0.90023	1	11228	11228		15.847	5.0233	1				13341	930	7932	7976	12803	12803					0.040782813032365084
GVKWPKWPPL	10	Unmodified	_GVKWPKWPPL_					0	0	0			REV__ENST00000465124.1_1_9:127635663-127635906:+|nuORF	REV__ENST00000465124.1_1_9:127635663-127635906:+|nuORF	MSMS	HCT116MG_D190212_S4	4	604.3543090820312	2	604.352951	1206.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.302	1	41.926	41.426	42.426	-0.37565								0	0	0	0.95179	1	15542	15542		4.3292	0.38484	1		+		13342	15816	7933	7977	12804	12804					0.09627178398977776
GVLAPLSP	8	Unmodified	_GVLAPLSP_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MSMS	HCT116MG_D190212_S1	1	377.22808837890625	2	377.228897	752.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.243	1	26.243	25.743	26.743	0								0	0	0	0.8837	1	9474	9474		5.7604	0	1		+		13343	13074	7934	7978	12805	12805					0.057116298113214725
GVLCGSARP	9	Unmodified	_GVLCGSARP_					0	0	0		ENST00000438498.2_1_11:113661703-113661895:+|nuORF;ENSG00000128272|ENST00000674920|ATF4	ENST00000438498.2_1_11:113661703-113661895:+|nuORF	ENST00000438498.2_1_11:113661703-113661895:+|nuORF	MSMS	HCT116MG_D190212_S4	4	430.2278137207031	2	430.226362	858.438172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.113	1	26.802	26.302	27.302	-0.3114								0	0	0	0.768	1	9691	9691		7.9102	1.187	1				13344	2992	7935	7979	12806	12806					0.003290026770514487
GVLELLPLVAP	11	Unmodified	_GVLELLPLVAP_					0	0	0			REV__nc|ENSG00000143384|Q07820-2|MCL1	REV__nc|ENSG00000143384|Q07820-2|MCL1	MSMS	HCT116MG_D190212_S1	1	374.23828125	3	374.237392	1119.69035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.551	1	29.551	29.051	30.051	0								0	0	0	0.96111	1	10805	10805		0.50596	0.23694	1		+		13345	12388	7936	7980	12807	12807					0.13528919239411152
GVLESFLLVV	10	Unmodified	_GVLESFLLVV_					0	0	0		nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MSMS	HCT116MG_D190212_S2	2	359.21746826171875	3	359.218109	1074.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.28	1	42.211	41.711	42.711	-0.068199								0	0	0	0.96291	1	15999	15999		0.77653	0.078866	1				13346	9483	7937	7981	12808	12808					0.09816657314013355
GVLEVSSR	8	Unmodified	_GVLEVSSR_					0	0	0			REV__nc|ENSG00000214128|A2RRL7-4|TMEM213	REV__nc|ENSG00000214128|A2RRL7-4|TMEM213	MULTI-MSMS	HCT116MG_D190212_S2	2	423.7364807128906	2	423.737617	845.460681	0.32659	0.00013839	-1.6017	-0.00067868	-1.2751	-0.0005403	423.7368900571358	46.57	0.51505	46.458	46.214	46.729	-0.11122					13	9	2	0	0	0	0.8506	1	17749	17749		5.2307	0	1	14808000	+		13347	17289	7938	7982	12809	12809					0.031769253463380664
GVLEVSSR	8	Unmodified	_GVLEVSSR_					0	0	0			REV__nc|ENSG00000214128|A2RRL7-4|TMEM213	REV__nc|ENSG00000214128|A2RRL7-4|TMEM213	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	423.737617	845.460681	0.1322	5.602E-05	-1.5924	-0.00067474	-1.4601	-0.00061872	423.73685921554204	46.105	0.36275	46.105	45.922	46.285	0	-0.29586	4.1655E-05	NaN	5.2307	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55006000	+		13348	17289	7938	7982							0.031769253463380664
GVLEVSSR	8	Unmodified	_GVLEVSSR_					0	0	0			REV__nc|ENSG00000214128|A2RRL7-4|TMEM213	REV__nc|ENSG00000214128|A2RRL7-4|TMEM213	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	423.737617	845.460681	0.32659	0.00013839	-1.6017	-0.00067868	-1.2751	-0.0005403	423.7368900571358	46.57	0.51505	46.458	46.214	46.729	-0.11122	0.057853	3.3765E-05	NaN	5.2307	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14808000	+		13349	17289	7938	7982							0.031769253463380664
GVLEVSSR	8	Unmodified	_GVLEVSSR_					0	0	0			REV__nc|ENSG00000214128|A2RRL7-4|TMEM213	REV__nc|ENSG00000214128|A2RRL7-4|TMEM213	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	423.737617	845.460681	0.12875	5.4555E-05	-1.7767	-0.00075286	-1.648	-0.0006983	423.73683585264433	46.953	0.46896	46.639	46.49	46.959	-0.31405	0.23801	-0.00011458	NaN	5.2307	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3250500	+		13350	17289	7938	7982							0.031769253463380664
GVLFEQEW	8	Unmodified	_GVLFEQEW_					0	0	0			REV__ENSG00000168005|ENST00000294244|SPINDOC	REV__ENSG00000168005|ENST00000294244|SPINDOC	MSMS	HCT116MG_D190212_S2	2	504.2431335449219	2	504.245275	1006.476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.049	1	35.921	35.421	36.421	-0.12799								0	0	0	0.85589	1	13468	13468		18.135	3.2967	1		+		13351	13179	7939	7983	12810	12810					-0.02698207856474255
GVLFKLWP	8	Unmodified	_GVLFKLWP_					0	0	0		RGS22|p.F1130L|1|0.37|ENSG00000132554|chr8:99978046-99978046|G/T|missense_variant	RGS22|p.F1130L|1|0.37|ENSG00000132554|chr8:99978046-99978046|G/T|missense_variant	RGS22|p.F1130L|1|0.37|ENSG00000132554|chr8:99978046-99978046|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	480.2619323730469	2	480.289288	958.564024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.688	1	30.421	29.921	30.921	-0.26704								0	0	0	0.8837	1	11293	11293		14.582	4.3983	1				13352	18103	7940	7984	12811	12811					0.08308457524799451
GVLFLLRLQLG	11	Unmodified	_GVLFLLRLQLG_					0	0	0			REV__B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	REV__B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	410.26458740234375	3	410.264053	1227.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.043	1	26.874	26.374	27.374	-0.16933								0	0	0	0.95954	1	9729	9729		1.3296	0.11481	1		+		13353	10025	7941	7985	12812	12812					0.16555405633266673
GVLFLLRLQLG	11	Unmodified	_GVLFLLRLQLG_					0	0	0			REV__B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	REV__B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	410.2651062011719	3	410.264053	1227.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.173	1	26.861	26.361	27.361	-0.3114								0	0	0	0.95954	1	9715	9715		1.3296	0.11481	1		+		13354	10025	7941	7985	12813	12813					0.16555405633266673
GVLFTRMKLY	10	Unmodified	_GVLFTRMKLY_					0	0	0			REV__ENST00000457231.1_1_7:124673839-124673965:+|nuORF	REV__ENST00000457231.1_1_7:124673839-124673965:+|nuORF	MSMS	HCT116MG_D190212_S1	1	614.8140258789062	2	614.349551	1226.68455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.605	1	34.605	34.105	35.105	0								0	0	0	0.91507	1	12845	12845		12.532	2.4576	1		+		13355	15756	7942	7986	12814	12814					0.08027497456123456
GVLFWATAARA	11	Unmodified	_GVLFWATAARA_					0	0	0		ENST00000369800.5_1_5:172116953-172117430:+|nuORF	ENST00000369800.5_1_5:172116953-172117430:+|nuORF	ENST00000369800.5_1_5:172116953-172117430:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2176208496094	3	388.217102	1161.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.323	1	22.324	21.824	22.824	0.00074577								0	0	0	0.9598	1	7826	7826		0.40827	0	1				13356	7416	7943	7987	12815	12815					0.055128269798160545
GVLGAQTELF	10	Unmodified	_GVLGAQTELF_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MSMS	HCT116MG_D190212_S1	1	517.7796020507812	2	517.779482	1033.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.781	1	53.781	53.281	54.281	0								0	0	0	0.72975	1	20605	20605		36.127	0.082828	1		+		13357	10959	7944	7988	12816	12816					0.028980367233543802
GVLGCVFVVL	10	Unmodified	_GVLGCVFVVL_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-MSMS	HCT116MG_D190212_S1	1	503.2940368652344	2	503.293714	1004.57287	0.48892	0.00024607	0.019	9.5627E-06	0.50792	0.00025563	503.2937666771349	53.23	0.20492	53.23	53.102	53.307	0					5	3	2	0	0	0	0.84919	1	20409	20409		7.9102	5.0209	1	8510500	+		13358	13378	7945	7989	12817	12817					0.07077063098961389
GVLGIQRP	8	Unmodified	_GVLGIQRP_					0	0	0		ASPHD1|p.C249Afs*27|1|0.31|ENSG00000174939|chr16:29901708-29901708|C/-|frameshift_variant;ENSG00000174939|ENST00000308748|ASPHD1	ASPHD1|p.C249Afs*27|1|0.31|ENSG00000174939|chr16:29901708-29901708|C/-|frameshift_variant	ASPHD1|p.C249Afs*27|1|0.31|ENSG00000174939|chr16:29901708-29901708|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	420.2591552734375	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.481	1	27.308	26.808	27.808	-0.17297								0	0	0	0.8837	1	9905	9905		6.3541	1.1234	1				13359	201	7946	7990	12818	12818					0.07677525825511111
GVLGIQRP	8	Unmodified	_GVLGIQRP_					0	0	0		ASPHD1|p.C249Afs*27|1|0.31|ENSG00000174939|chr16:29901708-29901708|C/-|frameshift_variant;ENSG00000174939|ENST00000308748|ASPHD1	ASPHD1|p.C249Afs*27|1|0.31|ENSG00000174939|chr16:29901708-29901708|C/-|frameshift_variant	ASPHD1|p.C249Afs*27|1|0.31|ENSG00000174939|chr16:29901708-29901708|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	420.2594909667969	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.46	1	27.139	26.639	27.639	-0.32157								0	0	0	0.8837	1	9831	9831		10.183	0	1				13360	201	7946	7990	12819	12819					0.07677525825511111
GVLGKPPKAPV	11	Unmodified	_GVLGKPPKAPV_					0	0	0			REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF	REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF	MSMS	HCT116MG_D190212_S4	4	531.8351440429688	2	531.837134	1061.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.571	1	56.265	55.765	56.765	-0.30626								0	0	0	0.94924	1	21210	21210		6.7232	3.4419	1		+		13361	11236	7947	7991	12820	12820					0.1313518564502374
GVLGLHQRLWG	11	Unmodified	_GVLGLHQRLWG_					0	0	0			REV__ENSG00000178732|ENST00000692618|GP5	REV__ENSG00000178732|ENST00000692618|GP5	MSMS	HCT116MG_D190212_S1	1	618.35498046875	2	618.354014	1234.69348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.957	1	49.957	49.457	50.457	0								0	0	0	0.95521	1	19049	19049		3.5965	0.31518	1		+		13362	13613	7948	7992	12821	12821					0.08551607136769235
GVLGPYILV	9	Unmodified	_GVLGPYILV_					0	0	0			REV__ENST00000479481.5_1_10:99116853-99131081:-|nuORF	REV__ENST00000479481.5_1_10:99116853-99131081:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	465.28570556640625	2	465.786579	929.558604	-0.0043674	-2.0343E-06	3.3198	0.0015463	3.3154	0.0015443	465.787209060575	53.32	0.31268	52.985	52.722	53.035	-0.33473					8	5	2	0	0	0	0.26608	1	19905	19905		5.2307	2.6532	1	1051200	+		13363	10626	7949	7993	12822	12822					0.09100733942341321
GVLGRTEEAL	10	Unmodified	_GVLGRTEEAL_					0	0	0		ENST00000380476.7_1_8:27348689-27361167:+|nuORF;EPHX2|p.L183Wfs*8|5|0.21|ENSG00000120915|chr8:27506876-27506876|T/-|frameshift_variant;ENST00000520623.5_1_8:27348689-27396319:+|nuORF;EPHX2|p.R516Gfs*19|1|0.17|ENSG00000120915|chr8:27544198-27544198|A/-|frameshift_variant;ENSG00000120915|ENST00000521400|EPHX2	ENST00000380476.7_1_8:27348689-27361167:+|nuORF	ENST00000380476.7_1_8:27348689-27361167:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	522.7875366210938	2	522.787838	1043.56112	0.73197	0.00038267	-1.4882	-0.00077801	-0.75623	-0.00039535	522.7867335863529	37.355	0.24969	37.355	37.249	37.499	0					7	4	2	0	0	0	0.73913	1	13996	13996		17.113	4.0704	1	5942700			13364	2718	7950	7994	12823	12823					0.04108537609317864
GVLGSSKVL	9	Unmodified	_GVLGSSKVL_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MSMS	HCT116MG_D190212_S4	4	430.2647705078125	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.92	1	35.534	35.034	36.034	-0.38606								0	0	0	0.7696	1	13125	13125		2.3027	1.5091	1				13365	4436	7951	7995	12824	12824					0.08254972902852842
GVLKIHRKERR	11	Unmodified	_GVLKIHRKERR_					0	0	0		ENST00000436126.5_1_2:177043793-177052894:-|nuORF	ENST00000436126.5_1_2:177043793-177052894:-|nuORF	ENST00000436126.5_1_2:177043793-177052894:-|nuORF	MSMS	HCT116MG_D190212_S3	3	464.62933349609375	3	464.628388	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.544	1	13.619	13.119	14.119	0.074899								0	0	0	0.96141	1	4302	4302		0.094841	0.011491	1				13366	7884	7952	7996	12825	12825					0.1835372313919379
GVLKIHRKERR	11	Unmodified	_GVLKIHRKERR_					0	0	0		ENST00000436126.5_1_2:177043793-177052894:-|nuORF	ENST00000436126.5_1_2:177043793-177052894:-|nuORF	ENST00000436126.5_1_2:177043793-177052894:-|nuORF	MSMS	HCT116MG_D190212_S3	3	696.4368896484375	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.009	1	60.763	60.263	61.263	-0.24588								0	0	0	0.96141	1	23275	23275		0.35063	0	1				13367	7884	7952	7996	12826	12826					0.1835372313919379
GVLKIHRKERR	11	Unmodified	_GVLKIHRKERR_					0	0	0		ENST00000436126.5_1_2:177043793-177052894:-|nuORF	ENST00000436126.5_1_2:177043793-177052894:-|nuORF	ENST00000436126.5_1_2:177043793-177052894:-|nuORF	MSMS	HCT116MG_D190212_S3	3	696.4380493164062	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.616	1	61.377	60.877	61.877	-0.2387								0	0	0	0.96141	1	23520	23520		0.35063	0	1				13368	7884	7952	7996	12827	12827					0.1835372313919379
GVLKIHRKERR	11	Unmodified	_GVLKIHRKERR_					0	0	0		ENST00000436126.5_1_2:177043793-177052894:-|nuORF	ENST00000436126.5_1_2:177043793-177052894:-|nuORF	ENST00000436126.5_1_2:177043793-177052894:-|nuORF	MSMS	HCT116MG_D190212_S4	4	696.4384155273438	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.833	1	61.579	61.079	62.079	-0.25457								0	0	0	0.96141	1	23337	23337		0.35063	0	1				13369	7884	7952	7996	12828	12828					0.1835372313919379
GVLKKFCP	8	Unmodified	_GVLKKFCP_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MSMS	HCT116MG_D190212_S4	4	446.25994873046875	2	446.259674	890.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.764	1	20.555	20.055	21.055	-0.20959								0	0	0	0.8837	1	7128	7128		2.8892	0	1				13370	3205	7953	7997	12829	12829					0.05516238238965343
GVLKKFLLSLW	11	Unmodified	_GVLKKFLLSLW_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-3|HPSE	REV__nc|ENSG00000173083|Q9Y251-3|HPSE	MSMS	HCT116MG_D190212_S2	2	652.4117431640625	2	652.410466	1302.80638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.684	1	62.554	62.054	63.054	-0.12924								0	0	0	0.96141	1	24299	24299		0.35063	0	1		+		13371	13416	7954	7998	12830	12830					0.16708862810128267
GVLKWLRRE	9	Unmodified	_GVLKWLRRE_					0	0	0			REV__ENST00000476848.5_1_21:43792873-43802453:-|nuORF	REV__ENST00000476848.5_1_21:43792873-43802453:-|nuORF	MSMS	HCT116MG_D190212_S4	4	386.236572265625	3	386.236497	1155.68766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.18	1	15.019	14.519	15.519	-0.16089								0	0	0	0.77008	1	4872	4872		0.26902	0	1		+		13372	12818	7955	7999	12831	12831					0.11604508625100607
GVLLIYKT	8	Unmodified	_GVLLIYKT_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;OSBPL5|p.D516Mfs*10|1|0.05|ENSG00000021762|chr11:3100233-3100234|-/AT|frameshift_variant;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;OSBPL8|p.N184Kfs*14|1|0.15|ENSG00000091039|chr12:76397814-76397815|-/T|frameshift_variant	ENSG00000091039|ENST00000261183|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	MULTI-MSMS	HCT116MG_D190212_S2	2	906.5646362304688	1	906.565881	905.558604	0.78062	0.00070768	-2.1588	-0.0019571	-1.3782	-0.0012495	906.5634222034857	60.889	0.56964	60.741	60.527	61.097	-0.14852					14	10	2	0	0	0	0.86388	1	23589	23589		2.8892	2.0956	1	22265000			13373	1551	7956	8000	12832	12832					0.10204733942327948
GVLLLRHG	8	Unmodified	_GVLLLRHG_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	HCT116MG_D190212_S3	3	864.5428466796875	1	864.541397	863.534121	1.0119	0.00087485	-0.19979	-0.00017272	0.81214	0.00070213	864.5412883419187	60.552	3.4166	60.299	58.112	61.529	-0.25233					94	65	2	0	0	0	0.86388	1	23167	23167		2.8892	0.31174	1	11658000	+		13374	12612	7957	8001	12833	12833					0.09689518579466494
GVLLPQPL	8	Unmodified	_GVLLPQPL_					0	0	0			REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF	REV__ENST00000491910.5_1_22:24981856-24984399:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	418.7649230957031	2	418.765646	835.516739	0.030797	1.2897E-05	-1.4951	-0.00062611	-1.4643	-0.00061321	418.76488088704644	21.252	0.15992	21.252	21.173	21.333	0					4	2	2	0	0	0	0.76257	1	7492	7492		15.768	0	1	9147500	+		13375	13591	7958	8002	12834	12834					0.0924017825378769
GVLLRVRVGK	10	Unmodified	_GVLLRVRVGK_					0	0	0			REV__ENSG00000166428|ENST00000392593|PLD4	REV__ENSG00000166428|ENST00000392593|PLD4	MSMS	HCT116MG_D190212_S2	2	366.2481384277344	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.731	1	9.4759	8.9759	9.9759	-0.25508								0	0	0	0.96804	1	3050	3050		0.69767	0.29695	1		+		13376	13105	7959	8003	12835	12835					0.18001385521824886
GVLMIILYL	9	Unmodified	_GVLMIILYL_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8-3|UBR2	REV__nc|ENSG00000024048|Q8IWV8-3|UBR2	MULTI-MSMS	HCT116MG_D190212_S4	4	517.582275390625	2	517.819564	1033.62458	0.18264	9.4576E-05	-0.96863	-0.00050158	-0.78599	-0.000407	517.8192966153164	50.218	0.5715	49.859	49.637	50.209	-0.35878					14	10	2	0	0	0	0.74258	1	18662	18662		2.3027	1.6124	1	3651900	+		13377	10559	7960	8004	12836	12836					0.10910806792867334
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000164508|ENST00000297012|H2AC1	nc|ENSG00000246705|Q9BTM1-2|H2AJ	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MSMS	HCT116MG_D190212_S1	1	910.5363159179688	1	910.535643	909.528367	0.64345	0.00058588	-0.077946	-7.0972E-05	0.5655	0.00051491	910.5352302883074	50.955	0.36181	50.955	50.73	51.091	0					12	6	3	0	0	0	0.005725	1	19445	19445		131.3	56.875	1	17446000			13378	5603	7961	8005	12837	12837					0.06998375277123614
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000164508|ENST00000297012|H2AC1	nc|ENSG00000246705|Q9BTM1-2|H2AJ	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MSMS	HCT116MG_D190212_S2	2	910.53662109375	1	910.535643	909.528367	0.66948	0.00060958	0.35245	0.00032091	1.0219	0.0009305	910.5357707848	51.129	0.46482	50.951	50.655	51.12	-0.17869					20	8	3	0	0	0	0.0043177	1	19590	19590		146.01	71.078	1	39133000			13379	5603	7961	8005	12838	12838					0.06998375277123614
GVLRLLALIF	10	Unmodified	_GVLRLLALIF_					0	0	0		FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant;ENSG00000198643|ENST00000358781|FAM3D	FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant	FAM3D|p.G139Vfs*16|1|0.28|ENSG00000198643|chr3:58637183-58637183|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	372.2491760253906	3	372.249743	1113.7274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.683	1	32.303	31.803	32.803	-0.37924								0	0	0	0.96769	1	11913	11913		0.77653	0.50751	1				13380	6247	7962	8006	12839	12839					0.17508635575836706
GVLRRQVGDP	10	Unmodified	_GVLRRQVGDP_					0	0	0			REV__ENST00000566600.1_1_16:1821268-1821535:-|nuORF	REV__ENST00000566600.1_1_16:1821268-1821535:-|nuORF	MSMS	HCT116MG_D190212_S2	2	366.2120361328125	3	366.21224	1095.61489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.795	1	22.41	21.91	22.91	-0.3852								0	0	0	0.95381	1	8093	8093		3.8763	0	1		+		13381	11174	7963	8007	12840	12840					0.0709075483171091
GVLTASEP	8	Unmodified	_GVLTASEP_					0	0	0		ZNF318|p.S508Pfs*4|1|0.19|ENSG00000171467|chr6:43355812-43355812|A/-|frameshift_variant;ZNF318|p.N708Tfs*6|1|0.34|ENSG00000171467|chr6:43355211-43355211|T/-|frameshift_variant;ZNF318|p.P785Lfs*37|1|0.23|ENSG00000171467|chr6:43354980-43354980|G/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318;ZNF318|p.A1247Lfs*13|1|0.36|ENSG00000171467|chr6:43340260-43340260|T/-|frameshift_variant;ZNF318|p.T1649Lfs*8|1|0.04|ENSG00000171467|chr6:43339053-43339054|-/GACACTAG|frameshift_variant;ZNF318|p.T2157Qfs*54|1|0.39|ENSG00000171467|chr6:43337529-43337529|T/-|frameshift_variant;ENSG00000171467|ENST00000361428|ZNF318	ZNF318|p.S508Pfs*4|1|0.19|ENSG00000171467|chr6:43355812-43355812|A/-|frameshift_variant	ZNF318|p.S508Pfs*4|1|0.19|ENSG00000171467|chr6:43355812-43355812|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	387.2047119140625	2	387.205618	772.396684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.385	1	30.1	29.6	30.6	-0.28453								0	0	0	0.8837	1	11169	11169		5.7604	2.8712	1				13382	5194	7964	8008	12841	12841					0.0013814518938488618
GVLTRIKIKEN	11	Unmodified	_GVLTRIKIKEN_					0	0	0			REV__ENSG00000141161|ENST00000394570|UNC45B	REV__ENSG00000141161|ENST00000394570|UNC45B	MSMS	HCT116MG_D190212_S4	4	635.8969116210938	2	635.895712	1269.77687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.923	1	50.568	50.068	51.068	-0.35483								0	0	0	0.94538	1	18936	18936		8.7454	2.5396	1		+		13383	12324	7965	8009	12842	12842					0.15277298793989758
GVLTRLRAD	9	Unmodified	_GVLTRLRAD_					0	0	0		nc|ENSG00000095752|P20809-2|IL11;IL11|p.G170Afs*14|1|0.35|ENSG00000095752|chr19:55366098-55366098|C/-|frameshift_variant;ENSG00000095752|ENST00000264563|IL11	nc|ENSG00000095752|P20809-2|IL11	nc|ENSG00000095752|P20809-2|IL11	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7987365722656	2	500.79854	999.582528	0.42578	0.00021323	0.15621	7.8229E-05	0.58198	0.00029146	500.7985209769842	51.011	1.3986	50.833	50.184	51.583	-0.17868					72	26	4	0	0	0	0.70732	1	19627	19627		4.756	0.42677	1	264860000			13384	1612	7966	8010	12843	12843					0.08271967428686366
GVLTRLRAD	9	Unmodified	_GVLTRLRAD_					0	0	0		nc|ENSG00000095752|P20809-2|IL11;IL11|p.G170Afs*14|1|0.35|ENSG00000095752|chr19:55366098-55366098|C/-|frameshift_variant;ENSG00000095752|ENST00000264563|IL11	nc|ENSG00000095752|P20809-2|IL11	nc|ENSG00000095752|P20809-2|IL11	MULTI-MSMS	HCT116MG_D190212_S3	3	500.7982177734375	2	500.79854	999.582528	0.43117	0.00021593	0.026413	1.3227E-05	0.45758	0.00022916	500.7983906855085	51.46	0.83846	51.149	50.753	51.591	-0.31166					43	15	4	0	0	0	0.70732	2	19350	19350;19401		4.756	0.42677	1	30549000			13385	1612	7966	8010	12844;12845	12844					0.08271967428686366
GVLTRLRAD	9	Unmodified	_GVLTRLRAD_					0	0	0		nc|ENSG00000095752|P20809-2|IL11;IL11|p.G170Afs*14|1|0.35|ENSG00000095752|chr19:55366098-55366098|C/-|frameshift_variant;ENSG00000095752|ENST00000264563|IL11	nc|ENSG00000095752|P20809-2|IL11	nc|ENSG00000095752|P20809-2|IL11	MULTI-MSMS	HCT116MG_D190212_S4	4	500.79852294921875	2	500.79854	999.582528	0.3496	0.00017508	0.16301	8.1634E-05	0.51261	0.00025672	500.7984938356218	51.38	1.6093	51.03	50.525	52.135	-0.35028					74	30	4	0	0	0	0.70732	1	19244	19244		4.756	0.42677	1	72598000			13386	1612	7966	8010	12846	12846					0.08271967428686366
GVLTRRKTE	9	Unmodified	_GVLTRRKTE_					0	0	0			REV__ENST00000267750.8_1_15:34517214-34517316:+|nuORF	REV__ENST00000267750.8_1_15:34517214-34517316:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.2376708984375	2	530.317097	1058.61964	0.30227	0.0001603	0.010133	5.374E-06	0.31241	0.00016568	530.3170093369758	12.295	0.15844	12.006	11.942	12.101	-0.28953					11	7	2	0	0	0	0.27042	1	4007	4007		0.6015	0.6015	1	591160	+		13387	14682	7967	8011	12847	12847					0.09267638974483816
GVLTWWMAHI	10	Unmodified	_GVLTWWMAHI_					0	0	0			REV__ENST00000545558.5_2_9:95087274-95087448:-|nuORF	REV__ENST00000545558.5_2_9:95087274-95087448:-|nuORF	MSMS	HCT116MG_D190212_S4	4	607.6968994140625	2	607.312969	1212.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.827	1	47.458	46.958	47.958	-0.36907								0	0	0	0.95351	1	17692	17692		3.9444	0.3479	1		+		13388	16394	7968	8012	12848	12848					0.013583687334858041
GVLWQRRLR	9	Unmodified	_GVLWQRRLR_					0	0	0		NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant;ENSG00000161270|ENST00000378910|NPHS1;NPHS1|p.R1092H|1|0.43|ENSG00000161270|chr19:35831654-35831654|C/T|missense_variant	NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant	NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	592.3621826171875	2	592.362173	1182.70979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.218	1	61.987	61.487	62.487	-0.23129								0	0	0	0.77008	1	23764	23764		0.6015	0	1				13389	4485	7969	8013	12849	12849					0.1257473309353827
GVMHNLQTFLL	11	Unmodified	_GVMHNLQTFLL_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1;PHLPP1|p.T1236Nfs*38|2|0.39|ENSG00000081913|chr18:62972653-62972654|-/A|frameshift_variant;PHLPP1|p.N1186Tfs*10|1|0.14|ENSG00000081913|chr18:62963464-62963464|A/-|frameshift_variant	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MSMS	HCT116MG_D190212_S1	1	424.8966979980469	3	424.897152	1271.66963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.168	1	16.168	15.668	16.668	0								0	0	0	0.9593	1	5423	5423		1.4551	0.12547	1				13390	1417	7970	8014	12850	12850					0.044660055880967775
GVNGGRNG	8	Unmodified	_GVNGGRNG_					0	0	0			REV__nc|ENSG00000125944|O43390-4|HNRNPR	REV__nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-MSMS	HCT116MG_D190212_S2	2	730.3602294921875	1	730.359076	729.351799	0.79192	0.00057838	-0.14284	-0.00010433	0.64907	0.00047406	730.3590262919389	44.225	0.41558	44.147	43.916	44.332	-0.078373					12	7	2	0	0	0	0.87576	1	16773	16773		0.79363	0	1	51191000	+		13391	11824	7971	8015	12851	12851					-0.023702408332951563
GVNGGRNG	8	Unmodified	_GVNGGRNG_					0	0	0			REV__nc|ENSG00000125944|O43390-4|HNRNPR	REV__nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-MSMS	HCT116MG_D190212_S4	4	732.3680419921875	1	730.359076	729.351799	0.82188	0.00060027	0.50657	0.00036998	1.3284	0.00097024	730.3589768894219	44.516	0.89271	44.143	43.468	44.361	-0.37329					28	20	3	0	0	0	0.86564	1	16265	16265		2.5775	0.92486	1	33555000	+		13392	11824	7971	8015	12852	12852					-0.023702408332951563
GVNMANTP	8	Unmodified	_GVNMANTP_					0	0	0			REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	MSMS	HCT116MG_D190212_S1	1	402.1878967285156	2	402.189445	802.364338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.809	1	19.809	19.309	20.309	0								0	0	0	0.8837	1	6890	6890		8.5933	1.8701	1		+		13393	15933	7972	8016	12853	12853					-0.04474965485280791
GVNNVLIGIEL	11	Unmodified	_GVNNVLIGIEL_					0	0	0			REV__nc|ENSG00000130948|P37058-2|HSD17B3	REV__nc|ENSG00000130948|P37058-2|HSD17B3	MSMS	HCT116MG_D190212_S1	1	380.8907775878906	3	380.892284	1139.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8077	1	9.8077	9.3077	10.308	0								0	0	0	0.95954	1	2982	2982		1.3296	0.1363	1		+		13394	11948	7973	8017	12854	12854					0.09078256711609356
GVNSFHDVELA	11	Unmodified	_GVNSFHDVELA_					0	0	0			REV__XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant	REV__XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	594.2887573242188	2	594.288202	1186.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.719	1	20.34	19.84	20.84	-0.37949								0	0	0	0.92983	1	7254	7254		16.149	0	1		+		13395	12772	7974	8018	12855	12855					-0.023966677416183302
GVNSFHDVELA	11	Unmodified	_GVNSFHDVELA_					0	0	0			REV__XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant	REV__XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	594.2874755859375	2	594.288202	1186.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.205	1	20.253	19.753	20.753	0.048107								0	0	0	0.92983	1	6974	6974		16.149	4.6544	1		+		13396	12772	7974	8018	12856	12856					-0.023966677416183302
GVPAATSP	8	Unmodified	_GVPAATSP_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19;REV__ENST00000400706.3_1_12:88275-90926:+|nuORF	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	HCT116MG_D190212_S2	2	350.186279296875	2	350.187229	698.359904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.337	1	26.984	26.484	27.484	-0.35254								0	0	0	0.8837	1	9925	9925		5.7604	2.8712	1				13397	6386;15392	7975	8019	12857	12857					-0.001341066365171173
GVPADAPAG	9	Unmodified	_GVPADAPAG_					0	0	0			REV__SHROOM2|p.Q1179Rfs*3|1|0.46|ENSG00000146950|chrX:9932813-9932813|C/-|frameshift_variant	REV__SHROOM2|p.Q1179Rfs*3|1|0.46|ENSG00000146950|chrX:9932813-9932813|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	754.3736572265625	1	754.372995	753.365718	1.0262	0.00077414	-0.69754	-0.0005262	0.32867	0.00024794	754.3725395360526	24.468	0.41507	24.2	23.978	24.393	-0.26881					13	7	2	0	0	0	0.32162	1	8675	8675		28.487	0	1	2648200	+		13398	12499	7976	8020	12858	12858					-0.020830081248618626
GVPETIKCLK	10	Unmodified	_GVPETIKCLK_					0	0	0		ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3;ENST00000531925.5_1_19:1789538-1806275:-|nuORF	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	363.21246337890625	3	363.210849	1086.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.957	1	19.957	19.457	20.457	0								0	0	0	0.95507	1	6949	6949		1.7423	0.54893	1				13399	230	7977	8021	12859	12859					0.07087529293767147
GVPGPAVQ	8	Unmodified	_GVPGPAVQ_					0	0	0			REV__ENST00000342380.2_1_2:96789833-96795634:-|nuORF	REV__ENST00000342380.2_1_2:96789833-96795634:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	724.123046875	1	724.398815	723.391539	1.2219	0.00088518	-2.9415	-0.0021308	-1.7195	-0.0012456	724.3961721200695	47.135	0.31028	47.013	46.871	47.182	-0.12175					7	5	2	0	0	0	0.81821	1	17919	17919		9.3474	0.75416	1	8779300	+		13400	14980	7978	8022	12860	12860					0.018778861174268968
GVPGRLRRLLL	11	Unmodified	_GVPGRLRRLLL_					0	0	0		ENST00000300134.7_1_12:57501484-57501966:-|nuORF	ENST00000300134.7_1_12:57501484-57501966:-|nuORF	ENST00000300134.7_1_12:57501484-57501966:-|nuORF	MSMS	HCT116MG_D190212_S2	2	625.3784790039062	2	625.414406	1248.81426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.939	1	49.775	49.275	50.275	-0.16369								0	0	0	0.95521	1	19127	19127		3.5965	1.9439	1				13401	6992	7979	8023	12861	12861					0.19980434850276652
GVPGSPGQP	9	Unmodified	_GVPGSPGQP_					0	0	0		nc|ENSG00000171798|Q76NI1-4|KNDC1;ENSG00000171798|ENST00000304613|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	MSMS	HCT116MG_D190212_S4	4	398.2019958496094	2	398.20341	794.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.732	1	27.41	26.91	27.91	-0.32157								0	0	0	0.76669	1	9941	9941		12.532	0.89125	1				13402	5212	7980	8024	12862	12862					-0.013153192335153108
GVPHRRLTL	9	Unmodified	_GVPHRRLTL_					0	0	0			REV__ENST00000314622.8_1_3:93813901-93813955:+|nuORF	REV__ENST00000314622.8_1_3:93813901-93813955:+|nuORF	MSMS	HCT116MG_D190212_S1	1	350.2365417480469	3	350.217325	1047.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.072	1	29.072	28.572	29.572	0								0	0	0	0.76991	1	10612	10612		1.1933	0	1		+		13403	14856	7981	8025	12863	12863					0.1082366641956014
GVPKPPAA	8	Unmodified	_GVPKPPAA_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;SYNGAP1|p.L1302Wfs*8|1|0.21|ENSG00000197283|chr6:33451772-33451772|C/-|frameshift_variant;ENSG00000197283|ENST00000646630|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MSMS	HCT116MG_D190212_S1	1	368.7211608886719	2	368.721239	735.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.113	1	22.113	21.613	22.613	0								0	0	0	0.8837	1	7813	7813		10.183	0.83596	1				13404	6133	7982	8026	12864	12864					0.04962763014123084
GVPKPPAA	8	Unmodified	_GVPKPPAA_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;SYNGAP1|p.L1302Wfs*8|1|0.21|ENSG00000197283|chr6:33451772-33451772|C/-|frameshift_variant;ENSG00000197283|ENST00000646630|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MSMS	HCT116MG_D190212_S2	2	368.7195129394531	2	368.721239	735.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.934	1	45.833	45.333	46.333	-0.1014								0	0	0	0.8837	1	17483	17483		0.79363	0	1				13405	6133	7982	8026	12865	12865					0.04962763014123084
GVPLLLLLLLP	11	Unmodified	_GVPLLLLLLLP_					0	0	0			REV__nc|ENSG00000090554|P49771-3|FLT3LG	REV__nc|ENSG00000090554|P49771-3|FLT3LG	MSMS	HCT116MG_D190212_S3	3	580.9022216796875	2	580.904485	1159.79442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.515	1	49.199	48.699	49.699	-0.31596								0	0	0	0.95925	1	18648	18648		1.4819	0	1		+		13406	10986	7983	8027	12866	12866					0.22091246066952408
GVPLWSYEGP	10	Unmodified	_GVPLWSYEGP_					0	0	0			REV__ENST00000422920.1_1_20:30310625-30310844:-|nuORF	REV__ENST00000422920.1_1_20:30310625-30310844:-|nuORF	MSMS	HCT116MG_D190212_S4	4	552.7698364257812	2	552.771657	1103.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.487	1	16.32	15.82	16.82	-0.16611								0	0	0	0.91906	1	5400	5400		11.64	3.7301	1		+		13407	15532	7984	8028	12867	12867					-0.01886249793665229
GVPMEMLK	8	Unmodified	_GVPMEMLK_					0	0	0			REV__nc|ENSG00000116198|O60308-3|CEP104	REV__nc|ENSG00000116198|O60308-3|CEP104	MSMS	HCT116MG_D190212_S2	2	452.7367248535156	2	452.735174	903.455795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.135	1	11.846	11.346	12.346	-0.28953								0	0	0	0.8837	1	3953	3953		2.8892	0.31174	1		+		13408	10153	7985	8029	12868	12868					0.00020581887702064705
GVPPFLPH	8	Unmodified	_GVPPFLPH_					0	0	0		ENST00000302424.11_1_10:104417132-104417561:+|nuORF	ENST00000302424.11_1_10:104417132-104417561:+|nuORF	ENST00000302424.11_1_10:104417132-104417561:+|nuORF	MSMS	HCT116MG_D190212_S1	1	432.2437744140625	2	432.242338	862.470124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.946	1	28.946	28.446	29.446	0								0	0	0	0.8837	1	10561	10561		2.8892	2.0956	1				13409	7008	7986	8030	12869	12869					0.033387384225079586
GVPQQAGPGE	10	Unmodified	_GVPQQAGPGE_					0	0	0		ENST00000561648.5_1_16:49669817-49669868:-|nuORF	ENST00000561648.5_1_16:49669817-49669868:-|nuORF	ENST00000561648.5_1_16:49669817-49669868:-|nuORF	MSMS	HCT116MG_D190212_S3	3	470.23004150390625	2	470.230156	938.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.542	1	19.602	19.102	20.102	0.05983								0	0	0	0.77279	1	6707	6707		32.305	0.18852	1				13410	8818	7987	8031	12870	12870					-0.025925665216618654
GVPRWRVW	8	Unmodified	_GVPRWRVW_					0	0	0		ENST00000359060.5_1_1:1498357-1498459:-|nuORF	ENST00000359060.5_1_1:1498357-1498459:-|nuORF	ENST00000359060.5_1_1:1498357-1498459:-|nuORF	MSMS	HCT116MG_D190212_S2	2	352.5355529785156	3	352.534766	1054.58247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.79	1	14.47	13.97	14.97	-0.31952								0	0	0	0.8837	1	4868	4868		0.45834	0	1				13411	7329	7988	8032	12871	12871					0.05736012219381337
GVPSEGPA	8	Unmodified	_GVPSEGPA_					0	0	0		ENST00000461547.5_1_20:56185389-56190069:-|nuORF;nc|ENSG00000124256|Q9H171-7|ZBP1;nc|ENSG00000124256|Q9H171-3|ZBP1;nc|ENSG00000124256|Q9H171-4|ZBP1;ENSG00000124256|ENST00000371173|ZBP1;nc|ENSG00000124256|Q9H171-2|ZBP1	ENST00000461547.5_1_20:56185389-56190069:-|nuORF	ENST00000461547.5_1_20:56185389-56190069:-|nuORF	MSMS	HCT116MG_D190212_S3	3	357.17669677734375	2	357.176861	712.339169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.73	1	23.668	23.168	24.168	-0.061449								0	0	0	0.8837	1	8392	8392		11.114	0	1				13412	2840	7989	8033	12872	12872					-0.02850697016185677
GVPTAYLGVP	10	Unmodified	_GVPTAYLGVP_					0	0	0			REV__ENSG00000120149|ENST00000239243|MSX2	REV__ENSG00000120149|ENST00000239243|MSX2	MSMS	HCT116MG_D190212_S1	1	487.2695617675781	2	487.271293	972.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.996	1	23.996	23.496	24.496	0								0	0	0	0.90023	1	8571	8571		15.847	1.0089	1		+		13413	11686	7990	8034	12873	12873					0.04066955557277652
GVPTHGRP	8	Unmodified	_GVPTHGRP_					0	0	0		ENST00000474908.5_1_9:35814712-35815141:-|nuORF;ENST00000474848.6_1_9:35813053-35815141:-|nuORF	ENST00000474908.5_1_9:35814712-35815141:-|nuORF	ENST00000474908.5_1_9:35814712-35815141:-|nuORF	MSMS	HCT116MG_D190212_S1	1	410.7248840332031	2	410.724844	819.435135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.553	1	19.553	19.053	20.053	0								0	0	0	0.8837	1	6787	6787		5.7604	1.4312	1				13414	8192	7991	8035	12874	12874					0.018194956145634933
GVQCKRYN	8	Unmodified	_GVQCKRYN_					0	0	0			REV__ENST00000272163.8_1_1:225611740-225615706:-|nuORF	REV__ENST00000272163.8_1_1:225611740-225615706:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	484.73309326171875	2	484.242544	966.470534	0.1207	5.8449E-05	-0.57175	-0.00027687	-0.45105	-0.00021842	484.24230321805226	21.216	0.25861	20.833	20.703	20.961	-0.38288					6	4	2	0	0	0	0.30262	1	7481	7481		19.439	0	1	5651700	+		13415	14697	7992	8036	12875	12875					-0.014042099199514269
GVQEGPAVEIE	11	Unmodified	_GVQEGPAVEIE_					0	0	0			REV__ENST00000592852.1_2_19:45910006-45910240:+|nuORF	REV__ENST00000592852.1_2_19:45910006-45910240:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	564.281494140625	2	564.282586	1126.55062	0.34442	0.00019435	-0.70082	-0.00039546	-0.3564	-0.00020111	564.2819219938929	20.791	0.83117	20.582	20.084	20.915	-0.20959					30	15	3	0	0	0	0.69138	1	7039	7039		24.991	2.2547	1	8350600	+		13416	16701	7993	8037	12876	12876					-0.007594898357865532
GVQEVQPRQE	10	Unmodified	_GVQEVQPRQE_					0	0	0			REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	MSMS	HCT116MG_D190212_S4	4	585.297607421875	2	585.299101	1168.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.705	1	28.364	27.864	28.864	-0.34059								0	0	0	0.91279	1	10334	10334		13.042	0	1		+		13417	13969	7994	8038	12877	12877					0.006101370069245604
GVQEVSGEHPP	11	Unmodified	_GVQEVSGEHPP_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3;REV__ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	REV__ENSG00000136383|ENST00000258888|ALPK3	MSMS	HCT116MG_D190212_S4	4	568.272216796875	2	568.272552	1134.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.316	1	23.069	22.569	23.569	-0.24775								0	0	0	0.93717	1	8157	8157		13.042	0.80181	1		+		13418	12131;9918	7995	8039	12878	12878					-0.031332407757190595
GVQGKEHSAHL	11	Unmodified	_GVQGKEHSAHL_					0	0	0		nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	MULTI-MSMS	HCT116MG_D190212_S3	3	581.8023071289062	2	581.801811	1161.58907	0.3044	0.0001771	0.32823	0.00019096	0.63262	0.00036806	581.8018211525546	20.712	0.67674	20.746	20.246	20.923	0.034473					21	12	3	0	0	0	0.52486	1	7097	7097		43.772	18.373	1	4081300			13419	4148	7996	8040	12879	12879					0.014738605894081047
GVQGKEHSAHL	11	Unmodified	_GVQGKEHSAHL_					0	0	0		nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	MULTI-MSMS	HCT116MG_D190212_S4	4	581.8026123046875	2	581.801811	1161.58907	0.21918	0.00012752	0.40769	0.0002372	0.62687	0.00036472	581.8019902536813	20.943	0.51915	20.733	20.344	20.863	-0.20959					14	9	2	0	0	0	0.43821	1	7164	7164		51.63	17.228	1	3102500			13420	4148	7996	8040	12880	12880					0.014738605894081047
GVQGQQDALN	10	Unmodified	_GVQGQQDALN_					0	0	0		COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant	COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	515.2540283203125	2	515.25162	1028.48869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.719	1	36.334	35.834	36.834	-0.38486								0	0	0	0.90475	1	13448	13448		14.838	1.3304	1				13421	509	7997	8041	12881	12881					-0.024417964642452716
GVQHQRHFGAP	11	Unmodified	_GVQHQRHFGAP_					0	0	0		ENST00000394636.8_1_16:54964782-54965211:+|nuORF	ENST00000394636.8_1_16:54964782-54965211:+|nuORF	ENST00000394636.8_1_16:54964782-54965211:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	617.3136596679688	2	617.31542	1232.61629	0.4999	0.00030859	-1.2686	-0.00078315	-0.76875	-0.00047456	617.3141535873089	31.34	0.46527	30.97	30.714	31.179	-0.37026					12	8	2	0	0	0	0.71887	1	11391	11391		14.838	1.7958	1	2656200			13422	7636	7998	8042	12882	12882					0.00928388920465295
GVQLICNNMVT	11	Unmodified	_GVQLICNNMVT_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant;ENST00000497023.1_1_2:32727936-32730277:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MSMS	HCT116MG_D190212_S4	4	596.294677734375	2	596.296659	1190.57876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.755	1	31.38	30.88	31.88	-0.37529								0	0	0	0.94538	1	11538	11538		8.7454	2.5396	1				13423	2485	7999	8043	12883	12883					-0.008902064516860264
GVQPGNSRVWQ	11	Unmodified	_GVQPGNSRVWQ_					0	0	0		nc|ENSG00000143772|P27987-2|ITPKB;ITPKB|p.N653Tfs*37|1|0.32|ENSG00000143772|chr1:226648746-226648746|T/-|frameshift_variant;ENSG00000143772|ENST00000429204|ITPKB	nc|ENSG00000143772|P27987-2|ITPKB	nc|ENSG00000143772|P27987-2|ITPKB	MSMS	HCT116MG_D190212_S3	3	614.3147583007812	2	614.315086	1226.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.554	1	23.514	23.014	24.014	-0.03968								0	0	0	0.82357	1	8322	8322		29.841	15.002	1				13424	3833	8000	8044	12884	12884					0.011375494807680298
GVQPPAPP	8	Unmodified	_GVQPPAPP_					0	0	0			REV__PSD|p.G198Afs*19|2|0.38|ENSG00000059915|chr10:102416446-102416446|C/-|frameshift_variant	REV__PSD|p.G198Afs*19|2|0.38|ENSG00000059915|chr10:102416446-102416446|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	381.7110900878906	2	381.710871	761.407189	0.024427	9.324E-06	-0.2306	-8.8023E-05	-0.20617	-7.8699E-05	381.7108239902133	17.837	0.26068	17.837	17.672	17.933	0					6	4	2	0	0	0	0.81097	1	6118	6118		10.183	0.83596	1	1550300	+		13425	10666	8001	8045	12885	12885					0.016941726344612107
GVQQQRPP	8	Unmodified	_GVQQQRPP_					0	0	0		ENST00000584581.5_1_18:72178181-72179738:+|nuORF;ENST00000582620.5_1_18:72167208-72179735:+|nuORF	ENST00000584581.5_1_18:72178181-72179738:+|nuORF	ENST00000584581.5_1_18:72178181-72179738:+|nuORF	MSMS	HCT116MG_D190212_S3	3	455.2483825683594	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.715	1	31.444	30.944	31.944	-0.27028								0	0	0	0.8837	1	11597	11597		10.183	0.83596	1				13426	8962	8002	8046	12886	12886					0.024911498147503153
GVQRRRRRR	9	Unmodified	_GVQRRRRRR_					0	0	0			REV__ENST00000373647.8_1_9:125703301-125719293:+|nuORF	REV__ENST00000373647.8_1_9:125703301-125719293:+|nuORF	MSMS	HCT116MG_D190212_S4	4	620.4379272460938	2	620.390119	1238.76569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.841	1	58.558	58.058	59.058	-0.28305								0	0	0	0.7701	1	22127	22127		0.52476	0.066424	1		+		13427	15193	8003	8047	12887	12887					0.15585379053709403
GVQTAKRRR	9	Unmodified	_GVQTAKRRR_					0	0	0			REV__ENSG00000125753|ENST00000245932|VASP	REV__ENSG00000125753|ENST00000245932|VASP	MSMS	HCT116MG_D190212_S4	4	536.3283081054688	2	536.328331	1070.64211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.647	1	35.261	34.761	35.761	-0.38606								0	0	0	0.77008	1	13029	13029		0.6015	0	1		+		13428	11817	8004	8048	12888	12888					0.10961283162737345
GVQTDKAGDIS	11	Unmodified	_GVQTDKAGDIS_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	HCT116MG_D190212_S4	4	545.7409057617188	2	545.772385	1089.53022	0.49657	0.00027101	1.2591	0.00068718	1.7557	0.00095819	545.7732687096734	19.448	0.31197	19.261	19.129	19.441	-0.18674					13	5	4	0	0	0	0.72792	1	6648	6648		11.495	0.67078	1	12962000			13429	4676	8005	8049	12889	12889					-0.010966604955683579
GVQVPELVPGR	11	Unmodified	_GVQVPELVPGR_					0	0	0		ENST00000458018.1_1_3:50357943-50358376:-|nuORF	ENST00000458018.1_1_3:50357943-50358376:-|nuORF	ENST00000458018.1_1_3:50357943-50358376:-|nuORF	MSMS	HCT116MG_D190212_S3	3	384.22259521484375	3	384.224146	1149.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.482	1	24.398	23.898	24.898	-0.083694								0	0	0	0.95743	1	8696	8696		2.4348	1.22	1				13430	8036	8006	8050	12890	12890					0.08176792288713841
GVQYRTGDE	9	Unmodified	_GVQYRTGDE_					0	0	0		CON__Q28194	CON__Q28194	CON__Q28194	MULTI-MSMS	HCT116MG_D190212_S4	4	512.76220703125	2	512.738345	1023.46214	-0.38841	-0.00019915	0.40778	0.00020909	0.01937	9.932E-06	512.7386225522058	16.373	1.5668	16.21	15.407	16.974	-0.16364					52	30	3	0	0	0	0.70732	1	5101	5101		4.756	4.756	1	2606700		+	13431	572	8007	8051	12891	12891					-0.04865485355583132
GVRCCCQMCC	10	Unmodified	_GVRCCCQMCC_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	HCT116MG_D190212_S2	2	369.1211242675781	3	369.122789	1104.34654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5631	1	9.308	8.808	9.808	-0.25508								0	0	0	0.97045	1	2993	2993		0.15932	0.15932	1				13432	4856	8008	8052	12892	12892					-0.20146154661597393
GVRCCCQMCC	10	Unmodified	_GVRCCCQMCC_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	HCT116MG_D190212_S2	2	369.1221618652344	3	369.122789	1104.34654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.15	1	9.8854	9.3854	10.385	-0.26472								0	0	0	0.97045	1	3197	3197		0.15932	0.15932	1				13433	4856	8008	8052	12893	12893					-0.20146154661597393
GVRCCCQMCC	10	Unmodified	_GVRCCCQMCC_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	HCT116MG_D190212_S2	2	369.1214904785156	3	369.122789	1104.34654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.674	1	10.4	9.9004	10.9	-0.27365								0	0	0	0.97045	1	3392	3392		0.15932	0.15932	1				13434	4856	8008	8052	12894	12894					-0.20146154661597393
GVRCCCQMCC	10	Unmodified	_GVRCCCQMCC_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	HCT116MG_D190212_S2	2	369.12127685546875	3	369.122789	1104.34654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.866	1	11.577	11.077	12.077	-0.28953								0	0	0	0.97045	1	3849	3849		0.15932	0.15932	1				13435	4856	8008	8052	12895	12895					-0.20146154661597393
GVRCCCQMCC	10	Unmodified	_GVRCCCQMCC_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	HCT116MG_D190212_S3	3	369.12139892578125	3	369.122789	1104.34654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.939	1	11.994	11.494	12.494	0.055045								0	0	0	0.97045	1	3690	3690		0.15932	0.15932	1				13436	4856	8008	8052	12896	12896					-0.20146154661597393
GVRCCCQMCC	10	Unmodified	_GVRCCCQMCC_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	HCT116MG_D190212_S4	4	369.12158203125	3	369.122789	1104.34654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.687	1	14.526	14.026	15.026	-0.16089								0	0	0	0.97045	1	4673	4673		0.15932	0.15932	1				13437	4856	8008	8052	12897	12897					-0.20146154661597393
GVRCCCQMCC	10	Unmodified	_GVRCCCQMCC_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	HCT116MG_D190212_S4	4	369.121826171875	3	369.122789	1104.34654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.874	1	15.71	15.21	16.21	-0.16364								0	0	0	0.97045	1	5152	5152		0.15932	0.15932	1				13438	4856	8008	8052	12898	12898					-0.20146154661597393
GVRCCCQMCC	10	Unmodified	_GVRCCCQMCC_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	HCT116MG_D190212_S4	4	369.1217041015625	3	369.122789	1104.34654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.157	1	34.771	34.271	35.271	-0.38606								0	0	0	0.97045	1	12866	12866		0.15932	0.15932	1				13439	4856	8008	8052	12899	12899					-0.20146154661597393
GVREFSLTN	9	Unmodified	_GVREFSLTN_					0	0	0		tr|U7T2A4|U7T2A4_FUSNUHolo-[acyl-carrier-protein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=acpSPE=3SV=1	tr|U7T2A4|U7T2A4_FUSNUHolo-[acyl-carrier-protein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=acpSPE=3SV=1	tr|U7T2A4|U7T2A4_FUSNUHolo-[acyl-carrier-protein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=acpSPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	511.7615661621094	2	511.766906	1021.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8525	1	9.8525	9.3525	10.352	0								0	0	0	0.76913	1	2999	2999		3.9444	1.8846	1				13440	18569	8009	8053	12900	12900					0.009359819207929831
GVREKFRAL	9	Unmodified	_GVREKFRAL_					0	0	0			REV__ENSG00000163807|ENST00000296121|KIAA1143	REV__ENSG00000163807|ENST00000296121|KIAA1143	MSMS	HCT116MG_D190212_S4	4	359.217529296875	3	359.217214	1074.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.794	1	33.409	32.909	33.909	-0.38426								0	0	0	0.7676	1	12314	12314		5.7319	1.5423	1		+		13441	12951	8010	8054	12901	12901					0.09548246699705487
GVRFQRWLRQ	10	Unmodified	_GVRFQRWLRQ_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MSMS	HCT116MG_D190212_S2	2	673.3836669921875	2	673.383637	1344.75272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.891	1	62.762	62.262	63.262	-0.12924								0	0	0	0.96911	1	24382	24382		0.45834	0.057624	1		+		13442	16744	8011	8055	12902	12902					0.09413503150972247
GVRHGVICFP	10	Unmodified	_GVRHGVICFP_					0	0	0		nc|ENSG00000138311|Q70YC5-3|ZNF365;nc|ENSG00000138311|Q70YC4|ZNF365	nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-3|ZNF365	MSMS	HCT116MG_D190212_S1	1	542.7335815429688	2	542.789661	1083.56477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.699	1	27.699	27.199	28.199	0								0	0	0	0.85468	1	10062	10062		21.747	8.2388	1				13443	9473	8012	8056	12903	12903					0.02632928902198728
GVRKIVKIGW	10	Unmodified	_GVRKIVKIGW_					0	0	0		NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant	NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant	NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	578.3743896484375	2	578.371675	1154.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.591	1	39.29	38.79	39.79	-0.30137								0	0	0	0.96377	1	14701	14701		1.6526	1.0511	1				13444	9707	8013	8057	12904	12904					0.1576226966460581
GVRLPPAVL	9	Unmodified	_GVRLPPAVL_					0	0	0			REV__ENSG00000170860|ENST00000306024|LSM3	REV__ENSG00000170860|ENST00000306024|LSM3	MSMS	HCT116MG_D190212_S1	1	461.2969665527344	2	461.297645	920.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.959	1	18.959	18.459	19.459	0								0	0	0	0.76877	1	6547	6547		5.2307	2.3415	1		+		13445	13319	8014	8058	12905	12905					0.11726958410736188
GVRLPTTR	8	Unmodified	_GVRLPTTR_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1;NCOR1|p.P1637Qfs*19|1|0.14|ENSG00000141027|chr17:16065526-16065526|G/-|frameshift_variant	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-MSMS	HCT116MG_D190212_S4	4	450.27496337890625	2	450.274701	898.534849	0.25141	0.0001132	-0.00074294	-3.3453E-07	0.25067	0.00011287	450.27460067603795	50.75	1.608	50.395	50.005	51.613	-0.35483					87	30	4	0	0	0	0.8672	1	19253	19253		2.3027	0	1	286610000			13446	3701	8015	8059	12906	12906					0.08152313228492858
GVRPHEKHDF	10	Unmodified	_GVRPHEKHDF_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;ANK3|p.K4020Rfs*45|4|0.35|ENSG00000151150|chr10:60068822-60068822|T/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MSMS	HCT116MG_D190212_S4	4	407.8768615722656	3	407.875628	1220.60505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.352	1	15.19	14.69	15.69	-0.16173								0	0	0	0.96453	1	4942	4942		0.62683	0.12087	1				13447	129	8016	8060	12907	12907					0.0035756682632381853
GVRQQEGAA	9	Unmodified	_GVRQQEGAA_					0	0	0		ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	458.75836181640625	2	458.235773	914.456993	0.090514	4.1477E-05	0.4711	0.00021587	0.56161	0.00025735	458.2359154599116	16.551	0.1562	16.551	16.473	16.629	0					4	2	2	0	0	0	0.66792	1	5608	5608		7.2892	0.93513	1	2510100			13448	7375	8017	8061	12908	12908					-0.0036574442752908
GVRRQQRRR	9	Unmodified	_GVRRQQRRR_					0	0	0		ENST00000523367.1_1_8:63161359-63775831:+|nuORF	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	606.7117919921875	2	606.368853	1210.72315	0.93649	0.00056786	0.90416	0.00054826	1.8407	0.0011161	606.3694236990034	48.66	0.41264	48.293	47.935	48.348	-0.36728					16	11	2	0	0	0	0.76704	1	17908	17908		0.6015	0.076735	1	7720000			13449	8570	8018	8062	12909	12909					0.12621983925487257
GVRRQQRRR	9	Unmodified	_GVRRQQRRR_					0	0	0		ENST00000523367.1_1_8:63161359-63775831:+|nuORF	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	606.368853	1210.72315	0.31167	0.00018898	1.4145	0.00085772	1.7262	0.0010467	606.3695751385387	48.187	1.6655	48.187	47.309	48.974	0	-0.053239	7.0054E-05	NaN	0.6015	86	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286330000			13450	8570	8018	8062							0.12621983925487257
GVRRQQRRR	9	Unmodified	_GVRRQQRRR_					0	0	0		ENST00000523367.1_1_8:63161359-63775831:+|nuORF	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	606.368853	1210.72315	0.93649	0.00056786	0.90416	0.00054826	1.8407	0.0011161	606.3694236990034	48.66	0.41264	48.293	47.935	48.348	-0.36728	0.053239	-0.00054888	NaN	0.6015	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7720000			13451	8570	8018	8062							0.12621983925487257
GVRRVKREDL	10	Unmodified	_GVRRVKREDL_					0	0	0		nc|ENSG00000141956|P57071|PRDM15;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MULTI-MSMS	HCT116MG_D190212_S1	1	614.3674926757812	2	614.367653	1226.72075	0.3198	0.00019648	-1.0891	-0.00066914	-0.76935	-0.00047266	614.3668072659391	48.153	1.02	48.153	47.646	48.666	0					30	19	2	0	0	0	0.88076	1	18204	18204		3.2813	0.28607	1	15363000			13452	9482	8019	8063	12910	12910					0.11646090677186294
GVRSFRKR	8	Unmodified	_GVRSFRKR_					0	0	0			REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant	REV__ELF3|p.L342Wfs*105|1|0.47|ENSG00000163435|chr1:202015230-202015230|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	503.3059387207031	2	503.306867	1004.59918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.993	1	57.719	57.219	58.219	-0.27434								0	0	0	0.8837	1	22051	22051		0.79363	0	1		+		13453	10451	8020	8064	12911	12911					0.09706513105322756
GVRSGVRF	8	Unmodified	_GVRSGVRF_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MSMS	HCT116MG_D190212_S2	2	439.2536926269531	2	439.253769	876.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.653	1	22.268	21.768	22.768	-0.3852								0	0	0	0.76512	1	8036	8036		25.399	2.2509	1		+		13454	14470	8021	8065	12912	12912					0.049797575399907146
GVRSLKTIFYV	11	Unmodified	_GVRSLKTIFYV_					0	0	0			REV__RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	REV__RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	641.8822021484375	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.14	1	54.14	53.64	54.64	0								0	0	0	0.95686	1	20753	20753		2.7352	0.23671	1		+		13455	13455	8022	8066	12913	12913					0.11490511390979918
GVRSPVQCVSP	11	Unmodified	_GVRSPVQCVSP_					0	0	0		TNS1|p.P973Rfs*13|2|0.28|ENSG00000079308|chr2:217831535-217831535|G/-|frameshift_variant;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	TNS1|p.P973Rfs*13|2|0.28|ENSG00000079308|chr2:217831535-217831535|G/-|frameshift_variant	TNS1|p.P973Rfs*13|2|0.28|ENSG00000079308|chr2:217831535-217831535|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	564.2633056640625	2	564.79514	1127.57573	0.32508	0.00018361	-2.233	-0.0012612	-1.9079	-0.0010776	565.2957386262328	32.517	0.41525	32.138	31.897	32.312	-0.37924					9	7	2	0	0	0	0.33998	1	11861	11861		16.149	2.2431	1	1660800			13456	1379	8023	8067	12914	12914					0.017042864858240137
GVRWHCQDCPP	11	Unmodified	_GVRWHCQDCPP_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MSMS	HCT116MG_D190212_S4	4	649.2828369140625	2	649.281874	1296.5492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.543	1	47.173	46.673	47.673	-0.36907								0	0	0	0.95581	1	17581	17581		3.2813	1.6287	1				13457	987	8024	8068	12915	12915					-0.08721725677150971
GVRYKELKNE	10	Unmodified	_GVRYKELKNE_					0	0	0		tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1	tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1	tr|U7T2B0|U7T2B0_FUSNUPD-(D/E)XKendonuclease-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00617PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	618.4080200195312	2	618.340769	1234.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.938	1	17.938	17.438	18.438	0								0	0	0	0.92917	1	6136	6136		9.3831	0.63772	1				13458	18570	8025	8069	12916	12916					0.059038734547812055
GVSAAWEEV	9	Unmodified	_GVSAAWEEV_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B;LARP4B|p.Q350Sfs*9|1|0.14|ENSG00000107929|chr10:829462-829462|G/-|frameshift_variant;LARP4B|p.T163Hfs*47|16|0.32|ENSG00000107929|chr10:844999-844999|T/-|frameshift_variant	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	MULTI-MSMS	HCT116MG_D190212_S2	2	474.2259826660156	2	474.227082	946.439611	0.11902	5.6444E-05	-2.69	-0.0012757	-2.5709	-0.0012192	474.2264295118322	15.153	0.26066	14.826	14.602	14.863	-0.32684					7	4	2	0	0	0	0.39063	1	5015	5015		23.148	1.6114	1	1041800			13459	2136	8026	8070	12917	12917					-0.035750847531971885
GVSADKQSAAP	11	Unmodified	_GVSADKQSAAP_					0	0	0			REV__PKD1L1|p.K1780Rfs*33|1|0.36|ENSG00000158683|chr7:47843068-47843068|T/-|frameshift_variant	REV__PKD1L1|p.K1780Rfs*33|1|0.36|ENSG00000158683|chr7:47843068-47843068|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	516.7511596679688	2	515.76182	1029.50909	0.23181	0.00011956	-0.28769	-0.00014838	-0.055883	-2.8822E-05	515.7615778400358	18.467	0.36453	18.544	18.413	18.778	0.076334					10	6	2	0	0	0	0.72373	1	6224	6224		13.042	0.80181	1	8176000	+		13460	12789	8027	8071	12918	12918					-0.00448625804438052
GVSAFRCCSP	10	Unmodified	_GVSAFRCCSP_					0	0	0		ENST00000550146.5_1_12:48357374-48358078:+|nuORF;ENST00000429772.6_1_12:48357436-48358078:+|nuORF	ENST00000550146.5_1_12:48357374-48358078:+|nuORF	ENST00000550146.5_1_12:48357374-48358078:+|nuORF	MSMS	HCT116MG_D190212_S3	3	513.6957397460938	2	513.728412	1025.44227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.089	1	27.9	27.4	28.4	-0.18847								0	0	0	0.90023	1	10151	10151		15.847	0	1				13461	7841	8028	8072	12919	12919					-0.06943275891558187
GVSAGNGK	8	Unmodified	_GVSAGNGK_					0	0	0		nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MSMS	HCT116MG_D190212_S1	1	689.3594970703125	1	689.357679	688.350402	0.67915	0.00046817	1.4526	0.0010014	2.1318	0.0014696	689.3583597888558	43.394	0.31237	43.394	43.16	43.472	0					8	5	2	0	0	0	0.85329	1	16419	16419		4.756	2.4533	1	10086000			13462	978	8029	8073	12920	12920					-0.006238749220528916
GVSAWLTT	8	Unmodified	_GVSAWLTT_					0	0	0			REV__ENSG00000166343|ENST00000299432|MSS51	REV__ENSG00000166343|ENST00000299432|MSS51	MSMS	HCT116MG_D190212_S3	3	417.72088623046875	2	417.721436	833.428318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.261	1	13.33	12.83	13.83	0.069158								0	0	0	0.8837	1	4194	4194		0.79363	0	1		+		13463	13099	8030	8074	12921	12921					0.004941379433034854
GVSAWYRSGQ	10	Unmodified	_GVSAWYRSGQ_					0	0	0			REV__ENST00000415992.5_1_9:139693810-139699267:+|nuORF	REV__ENST00000415992.5_1_9:139693810-139699267:+|nuORF	MSMS	HCT116MG_D190212_S4	4	555.772216796875	2	555.76998	1109.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.165	1	23.907	23.407	24.407	-0.25816								0	0	0	0.83705	1	8500	8500		24.021	6.9077	1		+		13464	15472	8031	8075	12922	12922					-0.024974998476636756
GVSCGCTC	8	Unmodified	_GVSCGCTC_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MSMS	HCT116MG_D190212_S3	3	365.1205749511719	2	365.12186	728.229166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.43	1	46.118	45.618	46.618	-0.31237								0	0	0	0.8837	1	17408	17408		0.79363	0	1		+		13465	10892	8032	8076	12923	12923					-0.1458190494288374
GVSCHSRCRWG	11	Unmodified	_GVSCHSRCRWG_					0	0	0			REV__ENST00000272647.9_1_2:128621949-128622093:-|nuORF	REV__ENST00000272647.9_1_2:128621949-128622093:-|nuORF	MSMS	HCT116MG_D190212_S1	1	624.279052734375	2	624.279666	1246.54478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.21	1	33.21	32.71	33.71	0								0	0	0	0.95196	1	12282	12282		5.2969	1.3525	1		+		13466	14700	8033	8077	12924	12924					-0.06863190100079919
GVSDHVPI	8	Unmodified	_GVSDHVPI_					0	0	0			REV__ENSG00000106278|ENST00000393386|PTPRZ1	REV__ENSG00000106278|ENST00000393386|PTPRZ1	MSMS	HCT116MG_D190212_S3	3	412.218017578125	2	412.21906	822.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.851	1	32.565	32.065	33.065	-0.28511								0	0	0	0.8837	1	12055	12055		5.7604	1.0044	1		+		13467	11290	8034	8078	12925	12925					0.005252538005606766
GVSDHVPI	8	Unmodified	_GVSDHVPI_					0	0	0			REV__ENSG00000106278|ENST00000393386|PTPRZ1	REV__ENSG00000106278|ENST00000393386|PTPRZ1	MSMS	HCT116MG_D190212_S4	4	412.21783447265625	2	412.21906	822.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.791	1	33.407	32.907	33.907	-0.38426								0	0	0	0.8837	1	12313	12313		5.7604	0	1		+		13468	11290	8034	8078	12926	12926					0.005252538005606766
GVSDHWALDDH	11	Unmodified	_GVSDHWALDDH_					0	0	0		ENST00000505435.3_1_5:70900220-70936922:+|nuORF;ENST00000510895.6_1_5:70898342-70931145:+|nuORF;MCCC2|p.E346Vfs*11|1|0.08|ENSG00000131844|chr5:71641037-71641038|-/AG|frameshift_variant;MCCC2|p.F347Vfs*33|1|0.09|ENSG00000131844|chr5:71641039-71641040|-/A|frameshift_variant;MCCC2|p.T385Yfs*27|1|0.46|ENSG00000131844|chr5:71643888-71643889|-/A|frameshift_variant;nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	ENST00000505435.3_1_5:70900220-70936922:+|nuORF	ENST00000505435.3_1_5:70900220-70936922:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	626.2730712890625	2	626.273084	1250.53161	0.42013	0.00026312	0.10391	6.5074E-05	0.52404	0.00032819	626.2729001870226	22.119	0.20809	22.12	21.99	22.198	0.00074577					5	3	2	0	0	0	0.73364	1	7772	7772		9.3831	1.2276	1	4321000			13469	3158	8035	8079	12927	12927					-0.08363026406823337
GVSDLLHCE	9	Unmodified	_GVSDLLHCE_					0	0	0			REV__nc|ENSG00000126787|Q15398-3|DLGAP5	REV__nc|ENSG00000126787|Q15398-3|DLGAP5	MSMS	HCT116MG_D190212_S4	4	486.7262268066406	2	486.726392	971.438231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.884	1	23.626	23.126	24.126	-0.25816								0	0	0	0.76818	1	8386	8386		7.2892	0	1		+		13470	17120	8036	8080	12928	12928					-0.048630421136067525
GVSEAAQF	8	Unmodified	_GVSEAAQF_					0	0	0			REV__ENST00000472799.1_1_22:24808300-24810588:+|nuORF	REV__ENST00000472799.1_1_22:24808300-24810588:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	808.384033203125	1	808.383559	807.376283	0.8849	0.00071534	-0.48877	-0.00039512	0.39613	0.00032022	808.3831840469359	33.697	0.41617	33.697	33.556	33.972	0					9	7	2	0	0	0	0.53394	1	12535	12535		38.151	0	1	8033300	+		13471	11056	8037	8081	12929	12929					-0.0351102547043638
GVSEAAQF	8	Unmodified	_GVSEAAQF_					0	0	0			REV__ENST00000472799.1_1_22:24808300-24810588:+|nuORF	REV__ENST00000472799.1_1_22:24808300-24810588:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	808.4314575195312	1	808.383559	807.376283	0.8849	0.00071534	-0.48877	-0.00039512	0.39613	0.00032022	808.3831840469359	33.697	0.41617	33.697	33.556	33.972	0					9	7	2	0	0	0	0.26661	1	12586	12586		18.135	6.4947	1	8033300	+		13472	11056	8037	8081	12930	12930					-0.0351102547043638
GVSEHPEAP	9	Unmodified	_GVSEHPEAP_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MSMS	HCT116MG_D190212_S3	3	461.7168884277344	2	461.716882	921.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.529	1	22.511	22.011	23.011	-0.018869								0	0	0	0.3563	1	7909	7909		36.044	5.8194	1				13473	1050	8038	8082	12931	12931					-0.04464255413006413
GVSENEENP	9	Unmodified	_GVSENEENP_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S3	3	487.7065734863281	2	487.706711	973.398869	0.030373	1.4813E-05	-0.030992	-1.5115E-05	-0.00061937	-3.0207E-07	487.7067752145856	18.05	0.31201	18.127	17.997	18.309	0.076334					8	5	2	0	0	0	0.41514	1	6166	6166		21.747	1.293	1	1671600			13474	2741	8039	8083	12932	12932					-0.0888947086347116
GVSFALMAK	9	Unmodified	_GVSFALMAK_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|55|3|sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|55|3|sense	MSMS	HCT116MG_D190212_S4	4	462.2542724609375	2	462.254588	922.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.323	1	28.974	28.474	29.474	-0.34921								0	0	0	0.76849	1	10584	10584		6.2058	1.8765	1		+		13475	16961	8040	8084	12933	12933					0.030276305137249437
GVSGDPWPSPG	11	Unmodified	_GVSGDPWPSPG_					0	0	0			REV__ENST00000288985.11_1_9:98638280-98643193:+|nuORF	REV__ENST00000288985.11_1_9:98638280-98643193:+|nuORF	MSMS	HCT116MG_D190212_S4	4	528.2423706054688	2	528.243264	1054.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.565	1	25.285	24.785	25.785	-0.27958								0	0	0	0.8787	1	9066	9066		22.736	10.205	1		+		13476	14742	8041	8085	12934	12934					-0.053082973501886954
GVSGKDDVF	9	Unmodified	_GVSGKDDVF_					0	0	0		ENSG00000105668|ENST00000222275|UPK1A;nc|ENSG00000105668|O00322-2|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	MULTI-MSMS	HCT116MG_D190212_S2	2	462.2268371582031	2	462.227082	922.439611	0.18773	8.6773E-05	-0.37603	-0.00017381	-0.1883	-8.7037E-05	462.22697070314035	29.874	0.25847	29.573	29.34	29.599	-0.30095					7	4	2	0	0	0	0.2682	1	10966	10966		34.102	3.4659	1	24037000			13477	2024	8042	8086	12935	12935					-0.02471084753199193
GVSGKDDVF	9	Unmodified	_GVSGKDDVF_					0	0	0		ENSG00000105668|ENST00000222275|UPK1A;nc|ENSG00000105668|O00322-2|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	MULTI-MSMS	HCT116MG_D190212_S3	3	462.2265930175781	2	462.227082	922.439611	0.54779	0.0002532	-1.0651	-0.0004923	-0.51726	-0.00023909	462.2265145983512	29.828	0.21474	29.592	29.5	29.715	-0.23655					8	3	3	0	0	0	0.33687	1	10880	10880		26.884	3.7352	1	5087400			13478	2024	8042	8086	12936	12936					-0.02471084753199193
GVSGLDSTAM	10	Unmodified	_GVSGLDSTAM_					0	0	0		TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	TBX3|p.K714Rfs*15|1|0.12|ENSG00000135111|chr12:114671931-114671932|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	469.25732421875	2	469.2184	936.422247	0.20469	9.6045E-05	0.92718	0.00043505	1.1319	0.00053109	469.2187286291577	19.366	0.26048	19.426	19.281	19.542	0.05983					6	4	2	0	0	0	0.76634	1	6583	6583		14.838	1.3304	1	2700900			13479	3331	8043	8087	12937	12937					-0.04850748350509093
GVSGNVGQWCD	11	Unmodified	_GVSGNVGQWCD_					0	0	0			REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	MULTI-MSMS	HCT116MG_D190212_S2	2	561.2376098632812	2	561.237655	1120.46076	0.35094	0.00019696	1.5687	0.00088043	1.9197	0.0010774	561.7403956708482	20.011	0.25912	19.636	19.506	19.765	-0.37503					9	4	3	0	0	0	0.7259	1	6987	6987		12.241	0	1	12986000	+		13480	13004	8044	8088	12938	12938					-0.09465442715986683
GVSGPPGQP	9	Unmodified	_GVSGPPGQP_					0	0	0			REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	398.2017517089844	2	398.20341	794.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.229	1	26.918	26.418	27.418	-0.3114								0	0	0	0.69648	1	9738	9738		19.257	3.4098	1		+		13481	10221	8045	8089	12939	12939					-0.013153192335266795
GVSGPPGQP	9	Unmodified	_GVSGPPGQP_					0	0	0			REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	398.20184326171875	2	398.20341	794.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.937	1	27.616	27.116	28.116	-0.32157								0	0	0	0.56943	1	10024	10024		25.399	3.6527	1		+		13482	10221	8045	8089	12940	12940					-0.013153192335266795
GVSGPSDKIIG	11	Unmodified	_GVSGPSDKIIG_					0	0	0		ENST00000360620.7_1_7:100400564-100401029:-|nuORF	ENST00000360620.7_1_7:100400564-100401029:-|nuORF	ENST00000360620.7_1_7:100400564-100401029:-|nuORF	MSMS	HCT116MG_D190212_S3	3	515.2820434570312	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.335	1	27.165	26.665	27.665	-0.16933								0	0	0	0.91433	1	9846	9846		18.146	1.2041	1				13483	7352	8046	8090	12941	12941					0.037091352350216766
GVSGPVHGGPP	11	Unmodified	_GVSGPVHGGPP_					0	0	0		ENST00000448973.6_1_16:685217-685415:-|nuORF	ENST00000448973.6_1_16:685217-685415:-|nuORF	ENST00000448973.6_1_16:685217-685415:-|nuORF	MSMS	HCT116MG_D190212_S4	4	481.22247314453125	2	480.748516	959.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.375	1	27.064	26.564	27.564	-0.3114								0	0	0	0.90571	1	9797	9797		19.257	4.6753	1				13484	7971	8047	8091	12942	12942					0.0011173009489766628
GVSGQASSPY	10	Unmodified	_GVSGQASSPY_					0	0	0		ENST00000593284.5_1_19:47998761-47998890:+|nuORF	ENST00000593284.5_1_19:47998761-47998890:+|nuORF	ENST00000593284.5_1_19:47998761-47998890:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	951.9548950195312	1	952.437051	951.429775	0.8882	0.00084596	-1.9075	-0.0018168	-1.0193	-0.00097083	952.4346711534754	24.956	0.20823	24.856	24.742	24.95	-0.099586					6	3	2	0	0	0	0.24623	1	8902	8902		17.113	0	1	3123400			13485	9047	8048	8092	12943	12943					-0.04788272758582934
GVSGSDQTL	9	Unmodified	_GVSGSDQTL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S2	2	432.2083740234375	2	432.208889	862.403226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.637	1	20.258	19.758	20.758	-0.37949								0	0	0	0.76669	1	7222	7222		12.532	0	1				13486	4258;9506	8049	8093	12944	12944					-0.03347961649910758
GVSGSSTR	8	Unmodified	_GVSGSSTR_					0	0	0		RAB42|p.G81Vfs*119|2|0.3|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	RAB42|p.G81Vfs*119|2|0.3|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	RAB42|p.G81Vfs*119|2|0.3|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	750.3735961914062	1	750.374057	749.366781	0.57508	0.00043152	-0.64575	-0.00048455	-0.070667	-5.3027E-05	750.3733467251911	39.205	0.3905	39.205	39.007	39.398	0					14	8	2	0	0	0	0.86564	1	14683	14683		2.5775	0	1	51730000			13487	9794	8050	8094	12945	12945					-0.017927937559647944
GVSGSYGGP	9	Unmodified	_GVSGSYGGP_					0	0	0			REV__ENST00000483962.1_1_2:241990766-241991612:+|nuORF	REV__ENST00000483962.1_1_2:241990766-241991612:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	780.3549194335938	1	780.352259	779.344983	0.75454	0.0005888	0.093543	7.2997E-05	0.84808	0.0006618	780.3522134980904	29.413	2.9255	29.187	27.167	30.093	-0.22611					87	55	2	0	0	0	0.19218	1	10101	10101		42.095	2.1372	1	5667000	+		13488	15977	8051	8095	12946	12946					-0.05351598504523736
GVSHDGGPPS	10	Unmodified	_GVSHDGGPPS_					0	0	0			REV__KIF1A|p.L1671Sfs*117|1|0.08|ENSG00000130294|chr2:240718069-240718069|G/-|frameshift_variant	REV__KIF1A|p.L1671Sfs*117|1|0.08|ENSG00000130294|chr2:240718069-240718069|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	455.2065734863281	2	455.206681	908.398809	0.25827	0.00011757	-0.32768	-0.00014916	-0.069403	-3.1593E-05	455.2066599562847	18.638	0.72929	18.708	18.25	18.979	0.069157					28	13	3	0	0	0	0.4604	1	6272	6272		37.974	5.6685	1	2700900	+		13489	16928	8052	8096	12947	12947					-0.059054260727975816
GVSHDGGPPS	10	Unmodified	_GVSHDGGPPS_					0	0	0			REV__KIF1A|p.L1671Sfs*117|1|0.08|ENSG00000130294|chr2:240718069-240718069|G/-|frameshift_variant	REV__KIF1A|p.L1671Sfs*117|1|0.08|ENSG00000130294|chr2:240718069-240718069|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	455.2067565917969	2	455.206681	908.398809	0.16022	7.2934E-05	0.18053	8.2179E-05	0.34075	0.00015511	455.20681505156034	18.701	0.57065	18.52	18.097	18.667	-0.18052					19	10	3	0	0	0	0.56527	1	6270	6270		30.637	1.555	1	1811200	+		13490	16928	8052	8096	12948	12948					-0.059054260727975816
GVSHDLVP	8	Unmodified	_GVSHDLVP_					0	0	0			REV__ENSG00000139209|ENST00000266579|SLC38A4	REV__ENSG00000139209|ENST00000266579|SLC38A4	MSMS	HCT116MG_D190212_S3	3	412.2176208496094	2	412.21906	822.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.849	1	33.557	33.057	34.057	-0.29183								0	0	0	0.8837	1	12438	12438		10.183	3.4602	1		+		13491	12252	8053	8097	12949	12949					0.005252538005720453
GVSITMWLM	9	Unmodified	_GVSITMWLM_					0	0	0			REV__ENST00000461013.5_1_5:131719758-131729961:+|nuORF	REV__ENST00000461013.5_1_5:131719758-131729961:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.2918701171875	2	519.261556	1036.50856	0.54438	0.00028268	-0.40945	-0.00021261	0.13494	7.0067E-05	519.2614244319973	35.744	1.0321	35.601	35.283	36.316	-0.14245					40	19	3	0	0	0	0.22781	1	13569	13569		23.148	10.617	1	67550000	+		13492	14067	8054	8098	12950	12950					-0.00823460049514324
GVSITWAHHSL	11	Unmodified	_GVSITWAHHSL_					0	0	0		ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	MULTI-SECPEP	HCT116MG_D190212_S1	1	604.3546142578125	2	604.314554	1206.61456	0.61468	0.00037146	0.33789	0.00020419	0.95257	0.00057565	604.3145237583489	46.087	0.31062	46.087	45.975	46.285	0					6	5	2	0	0	0	0.36495	1	17487	17487		1.1933	0	1	8561100			13493	6303	8055	8099	12951	12951					0.01951335111834851
GVSKEKRRKRN	11	Unmodified	_GVSKEKRRKRN_					0	0	0			REV__HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant	REV__HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	679.6463012695312	2	679.410383	1356.80621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.444	1	51.094	50.594	51.594	-0.35028								0	0	0	0.95581	1	19146	19146		3.2813	0.54611	1		+		13494	10521	8056	8100	12952	12952					0.1420825586283172
GVSKKKRES	9	Unmodified	_GVSKKKRES_					0	0	0			REV__KDM4B|p.F459V|1|0.41|ENSG00000127663|chr19:5131135-5131135|T/G|missense_variant	REV__KDM4B|p.F459V|1|0.41|ENSG00000127663|chr19:5131135-5131135|T/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	509.8037414550781	2	509.803823	1017.59309	0.19548	9.9656E-05	0.34084	0.00017376	0.53632	0.00027342	509.80383995289566	46.753	2.0455	46.439	45.94	47.986	-0.31405					83	40	3	0	0	0	0.70732	1	17398	17398		4.756	1.1595	1	14799000	+		13495	16922	8057	8101	12953	12953					0.08499950083137264
GVSLLLRCLHP	11	Unmodified	_GVSLLLRCLHP_					0	0	0			REV__ENST00000328914.4_1_7:4804068-4804185:+|nuORF	REV__ENST00000328914.4_1_7:4804068-4804185:+|nuORF	MSMS	HCT116MG_D190212_S4	4	604.3541870117188	2	604.352625	1206.6907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.055	1	33.671	33.171	34.171	-0.38426								0	0	0	0.94416	1	12420	12420		9.3831	2.0939	1		+		13496	14918	8058	8102	12954	12954					0.09562015687606618
GVSLTHDTTSP	11	Unmodified	_GVSLTHDTTSP_					0	0	0			REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	558.3974609375	2	557.772385	1113.53022	0.39641	0.00022111	1.0335	0.00057646	1.4299	0.00079757	558.2743480801511	16.291	0.20814	16.291	16.161	16.369	0					5	3	2	0	0	0	0.34807	1	5480	5480		17.113	5.4726	1	1165900	+		13497	9872	8059	8103	12955	12955					-0.02200660495577722
GVSLVRVRGR	10	Unmodified	_GVSLVRVRGR_					0	0	0		CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant;ENST00000502660.5_1_5:149456698-149465990:-|nuORF;CSF1R|p.R370Afs*2|1|0.75|ENSG00000182578|chr5:150070546-150070546|G/-|frameshift_variant;CSF1R|p.P402Qfs*3|1|0.11|ENSG00000182578|chr5:150070296-150070296|G/-|frameshift_variant;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000182578|P07333-2|CSF1R	CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000182578|P07333-2|CSF1R	CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	550.3434448242188	2	549.846356	1097.67816	0.58433	0.00032129	-3.6228	-0.001992	-3.0385	-0.0016707	549.8452457330447	34.687	0.67577	34.687	34.337	35.013	0					18	12	2	0	0	0	0.82332	1	12817	12817		10.074	1.3285	1	28153000			13498	605;5676;9575	8060	8104	12956	12956					0.1332274033959493
GVSLWRSLY	9	Unmodified	_GVSLWRSLY_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|283|2|anti-sense;chr15:53523322-53540662|232|17.27|0.17|6.68|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|66	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|283|2|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|283|2|anti-sense	MSMS	HCT116MG_D190212_S1	1	540.79345703125	2	540.795466	1079.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.572	1	26.572	26.072	27.072	0								0	0	0	0.74436	1	9607	9607		16.942	2.104	1				13499	451	8061	8105	12957	12957					0.03977449197191163
GVSNNPGE	8	Unmodified	_GVSNNPGE_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MSMS	HCT116MG_D190212_S1	1	387.1758117675781	2	387.17485	772.335146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.469	1	44.469	43.969	44.969	0								0	0	0	0.8837	1	16824	16824		5.2307	1.6342	1		+		13500	10915	8062	8106	12958	12958					-0.060127865099047995
GVSPEGRRPP	10	Unmodified	_GVSPEGRRPP_					0	0	0		ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	MSMS	HCT116MG_D190212_S4	4	526.4747924804688	2	526.285797	1050.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.717	1	30.353	29.853	30.853	-0.36416								0	0	0	0.91022	1	11119	11119		21.747	10.106	1				13501	6510	8063	8107	12959	12959					0.03378492906290376
GVSPKSIYIKF	11	Unmodified	_GVSPKSIYIKF_					0	0	0		ENSG00000120458|ENST00000374979|MSANTD2;nc|ENSG00000120458|Q6P1R3-3|MSANTD2;nc|ENSG00000120458|Q6P1R3-2|MSANTD2	ENSG00000120458|ENST00000374979|MSANTD2	ENSG00000120458|ENST00000374979|MSANTD2	MSMS	HCT116MG_D190212_S2	2	619.9478759765625	2	619.860806	1237.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.715	1	29.414	28.914	29.914	-0.30095								0	0	0	0.95023	1	10896	10896		6.2058	1.3088	1				13502	2699	8064	8108	12960	12960					0.09771420125343866
GVSPMPGLPHF	11	Unmodified	_GVSPMPGLPHF_					0	0	0			REV__PELP1|p.P668L|1|0.18|ENSG00000141456|chr17:4672988-4672988|G/A|missense_variant	REV__PELP1|p.P668L|1|0.18|ENSG00000141456|chr17:4672988-4672988|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	569.5267944335938	2	569.789327	1137.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.474	1	24.474	23.974	24.974	0								0	0	0	0.94416	1	8763	8763		9.3831	0	1		+		13503	17407	8065	8109	12961	12961					0.0008208946248942084
GVSPRWPA	8	Unmodified	_GVSPRWPA_					0	0	0		ENST00000588980.5_1_19:36234054-36235075:-|nuORF;ENST00000589429.5_3_19:36233501-36235273:-|nuORF	ENST00000588980.5_1_19:36234054-36235075:-|nuORF	ENST00000588980.5_1_19:36234054-36235075:-|nuORF	MSMS	HCT116MG_D190212_S2	2	435.4933776855469	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.753	1	11.464	10.964	11.964	-0.28953								0	0	0	0.8837	1	3806	3806		2.5775	0.27475	1				13504	9018	8066	8110	12962	12962					0.016046662743633533
GVSPTHPE	8	Unmodified	_GVSPTHPE_					0	0	0			REV__ENST00000590152.1_1_19:9266692-9267430:+|nuORF	REV__ENST00000590152.1_1_19:9266692-9267430:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	823.395263671875	1	823.394458	822.387182	0.79917	0.00065803	-0.34955	-0.00028781	0.44963	0.00037022	823.3941052383531	20.454	0.20832	20.5	20.361	20.57	0.045872					6	3	2	0	0	0	0.40466	1	7089	7089		49.669	9.2203	1	2771900	+		13505	11939	8067	8111	12963	12963					-0.031116230961515612
GVSPTHPE	8	Unmodified	_GVSPTHPE_					0	0	0			REV__ENST00000590152.1_1_19:9266692-9267430:+|nuORF	REV__ENST00000590152.1_1_19:9266692-9267430:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	823.3949584960938	1	823.394458	822.387182	0.84865	0.00069877	-0.0080421	-6.6218E-06	0.84061	0.00069215	823.3942905930644	20.632	0.31186	20.43	20.248	20.56	-0.20133					8	5	2	0	0	0	0.50777	1	7090	7090		40.449	2.2974	1	1836100	+		13506	11939	8067	8111	12964	12964					-0.031116230961515612
GVSPTHPE	8	Unmodified	_GVSPTHPE_					0	0	0			REV__ENST00000590152.1_1_19:9266692-9267430:+|nuORF	REV__ENST00000590152.1_1_19:9266692-9267430:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	823.394458	822.387182	0.79917	0.00065803	-0.34955	-0.00028781	0.44963	0.00037022	823.3941052383531	20.454	0.20832	20.5	20.361	20.57	0.045872	0.034838	-0.00012862	NaN	49.669	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2771900	+		13507	11939	8067	8111							-0.031116230961515612
GVSPTHPE	8	Unmodified	_GVSPTHPE_					0	0	0			REV__ENST00000590152.1_1_19:9266692-9267430:+|nuORF	REV__ENST00000590152.1_1_19:9266692-9267430:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	823.394458	822.387182	0.84865	0.00069877	-0.0080421	-6.6218E-06	0.84061	0.00069215	823.3942905930644	20.632	0.31186	20.43	20.248	20.56	-0.20133	-0.034838	0.00015258	NaN	49.669	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1836100	+		13508	11939	8067	8111							-0.031116230961515612
GVSQEGLFVL	10	Unmodified	_GVSQEGLFVL_					0	0	0			REV__ENST00000541795.1_1_11:73441692-73471680:-|nuORF	REV__ENST00000541795.1_1_11:73441692-73471680:-|nuORF	MSMS	HCT116MG_D190212_S1	1	350.1944580078125	3	350.193963	1047.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.277	1	43.277	42.777	43.777	0								0	0	0	0.95351	1	16345	16345		1.9064	0	1		+		13509	12690	8068	8112	12965	12965					0.03818323240443533
GVSQQNYSDNG	11	Unmodified	_GVSQQNYSDNG_					0	0	0			REV__ENST00000492472.1_1_3:50127867-50131398:+|nuORF	REV__ENST00000492472.1_1_3:50127867-50131398:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	585.777099609375	2	584.746899	1167.47924	0.24189	0.00014145	0.27442	0.00016047	0.51631	0.00030191	584.7470071673566	18.149	0.41336	17.974	17.792	18.205	-0.17501					18	7	4	0	0	0	0.73536	1	6026	6026		8.7454	0.83525	1	22339000	+		13510	16053	8069	8113	12966	12966					-0.09779609540419187
GVSQSHLLP	9	Unmodified	_GVSQSHLLP_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MSMS	HCT116MG_D190212_S3	3	469.27691650390625	2	469.258717	936.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.179	1	24.118	23.618	24.618	-0.061449								0	0	0	0.74436	1	8574	8574		16.942	0	1		+		13511	13324	8070	8114	12967	12967					0.0320890075471425
GVSRAGSRVAA	11	Unmodified	_GVSRAGSRVAA_					0	0	0			REV__ENSG00000186766|ENST00000388920|FOXI2	REV__ENSG00000186766|ENST00000388920|FOXI2	MULTI-SECPEP	HCT116MG_D190212_S3	3	515.2481689453125	2	515.791247	1029.56794	0.090732	4.6799E-05	1.8441	0.00095115	1.9348	0.00099795	515.7925484256116	38.732	0.36485	38.43	38.248	38.613	-0.30137					9	6	2	0	0	0	0.32914	1	14358	14358		28.495	3.0952	1	8428000	+		13512	13897	8071	8115	12968	12968					0.05433895280566503
GVSRAHPK	8	Unmodified	_GVSRAHPK_					0	0	0		ENST00000358716.8_1_14:35231259-35231352:-|nuORF	ENST00000358716.8_1_14:35231259-35231352:-|nuORF	ENST00000358716.8_1_14:35231259-35231352:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	851.4865112304688	1	851.484611	850.477334	0.77539	0.00066023	0.21071	0.00017942	0.9861	0.00083965	851.4843635629531	48.293	0.3651	47.977	47.723	48.088	-0.31596					10	6	2	0	0	0	0.84759	1	18146	18146		5.7604	3.1829	1	3467900			13513	7323	8072	8116	12969	12969					0.0461147102294035
GVSRAHPK	8	Unmodified	_GVSRAHPK_					0	0	0		ENST00000358716.8_1_14:35231259-35231352:-|nuORF	ENST00000358716.8_1_14:35231259-35231352:-|nuORF	ENST00000358716.8_1_14:35231259-35231352:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	851.484611	850.477334	0.65626	0.00055879	0.74183	0.00063165	1.3981	0.0011904	851.4850960613945	48.199	0.46633	47.832	47.573	48.039	-0.36727	-0.072331	0.00019067	NaN	5.7604	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6058500			13514	7323	8072	8116							0.0461147102294035
GVSRCWLGWS	10	Unmodified	_GVSRCWLGWS_					0	0	0		AluSc_dup32446|chr19:41729277-41729501:+|19.17342533549345|0.0040187158861641|12.22|474.0|13|3|anti-sense	AluSc_dup32446|chr19:41729277-41729501:+|19.17342533549345|0.0040187158861641|12.22|474.0|13|3|anti-sense	AluSc_dup32446|chr19:41729277-41729501:+|19.17342533549345|0.0040187158861641|12.22|474.0|13|3|anti-sense	MULTI-MSMS	HCT116MG_D190212_S3	3	575.7781982421875	2	575.776751	1149.53895	0.44435	0.00025585	1.1097	0.00063896	1.5541	0.00089481	576.2787583402408	18.702	0.2082	18.772	18.667	18.875	0.069159					5	3	2	0	0	0	0.77749	1	6397	6397		13.906	1.6654	1	2213200			13515	101	8073	8117	12970	12970					-0.029839653400813404
GVSRCWLGWS	10	Unmodified	_GVSRCWLGWS_					0	0	0		AluSc_dup32446|chr19:41729277-41729501:+|19.17342533549345|0.0040187158861641|12.22|474.0|13|3|anti-sense	AluSc_dup32446|chr19:41729277-41729501:+|19.17342533549345|0.0040187158861641|12.22|474.0|13|3|anti-sense	AluSc_dup32446|chr19:41729277-41729501:+|19.17342533549345|0.0040187158861641|12.22|474.0|13|3|anti-sense	MULTI-MATCH	HCT116MG_D190212_S2	2		2	575.776751	1149.53895	0.36954	0.00021277	0.39068	0.00022494	0.76022	0.00043772	575.7771520442644	19.35	0.26057	18.98	18.784	19.044	-0.3695	0.1043	-0.00073161	NaN	13.906	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4136500			13516	101	8073	8117							-0.029839653400813404
GVSRDFLSSP	10	Unmodified	_GVSRDFLSSP_					0	0	0			REV__ENST00000510206.5_1_4:186321548-186327081:-|nuORF	REV__ENST00000510206.5_1_4:186321548-186327081:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7724609375	2	532.772188	1063.52982	0.52017	0.00027713	-0.28123	-0.00014983	0.23894	0.0001273	532.7720166620784	27.063	1.1454	26.894	26.183	27.328	-0.16933					55	21	3	0	0	0	0.55624	1	9778	9778		31.268	2.1868	1	15077000	+		13517	16171	8074	8118	12971	12971					0.0005996457523451681
GVSRDFTSVP	10	Unmodified	_GVSRDFTSVP_					0	0	0		ENST00000412615.6_2_12:112590244-112590740:+|nuORF	ENST00000412615.6_2_12:112590244-112590740:+|nuORF	ENST00000412615.6_2_12:112590244-112590740:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7721557617188	2	532.772188	1063.52982	0.52017	0.00027713	-0.28123	-0.00014983	0.23894	0.0001273	532.7720166620784	27.063	1.1454	26.894	26.183	27.328	-0.16933					55	21	3	0	0	0	0.48679	1	9552	9552		36.127	1.7253	1	15077000			13518	7738	8075	8119	12972	12972					0.0005996457521177945
GVSRDFTSVP	10	Unmodified	_GVSRDFTSVP_					0	0	0		ENST00000412615.6_2_12:112590244-112590740:+|nuORF	ENST00000412615.6_2_12:112590244-112590740:+|nuORF	ENST00000412615.6_2_12:112590244-112590740:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	532.7721557617188	2	532.772188	1063.52982	0.47862	0.000255	-0.042354	-2.2565E-05	0.43627	0.00023243	532.772066127071	27.138	1.143	26.827	26.067	27.21	-0.3114					49	21	3	0	0	0	0.48679	2	9742	9501;9742		36.127	1.4528	1	15455000			13519	7738	8075	8119	12973;12974	12974					0.0005996457521177945
GVSRFTADVP	10	Unmodified	_GVSRFTADVP_					0	0	0		ENST00000398810.6_1_7:50659566-50659797:-|nuORF	ENST00000398810.6_1_7:50659566-50659797:-|nuORF	ENST00000398810.6_1_7:50659566-50659797:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7749633789062	2	524.774731	1047.53491	0.48515	0.00025459	0.1693	8.8846E-05	0.65445	0.00034344	524.7745604919276	29.464	0.46857	29.228	28.823	29.292	-0.23655					12	8	2	0	0	0	0.67188	1	10695	10695		22.736	2.3217	1	2571300			13520	7686	8076	8120	12975	12975					0.013042684378433478
GVSRFTADVP	10	Unmodified	_GVSRFTADVP_					0	0	0		ENST00000398810.6_1_7:50659566-50659797:-|nuORF	ENST00000398810.6_1_7:50659566-50659797:-|nuORF	ENST00000398810.6_1_7:50659566-50659797:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	524.260498046875	2	524.774731	1047.53491	0.36219	0.00019007	0.75702	0.00039726	1.1192	0.00058733	525.2768259118789	29.491	0.51961	29.141	28.825	29.345	-0.34921					13	9	2	0	0	0	0.27462	1	10728	10728		24.021	9.1823	1	4484400			13521	7686	8076	8120	12976	12976					0.013042684378433478
GVSRGVGFA	9	Unmodified	_GVSRGVGFA_					0	0	0		ENST00000497205.1_1_3:29476395-29781369:+|nuORF;RBMS3|p.P291Lfs*26|1|0.42|ENSG00000144642|chr3:29897456-29897456|C/-|frameshift_variant;nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3	ENST00000497205.1_1_3:29476395-29781369:+|nuORF	ENST00000497205.1_1_3:29476395-29781369:+|nuORF	MSMS	HCT116MG_D190212_S2	2	425.2190246582031	2	425.232502	848.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.439	1	18.075	17.575	18.575	-0.36325								0	0	0	0.53872	1	6337	6337		26.884	3.7352	1				13522	3872	8077	8121	12977	12977					0.020163624117572
GVSRIKSRDL	10	Unmodified	_GVSRIKSRDL_					0	0	0			REV__nc|ENSG00000254986|Q9NY33-2|DPP3	REV__nc|ENSG00000254986|Q9NY33-2|DPP3	MSMS	HCT116MG_D190212_S1	1	565.8357543945312	2	565.835654	1129.65676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.023	1	19.023	18.523	19.523	0								0	0	0	0.93854	1	6573	6573		7.2892	0	1		+		13523	14392	8078	8122	12978	12978					0.0971131052021974
GVSRPNKVI	9	Unmodified	_GVSRPNKVI_					0	0	0			REV__ENST00000498260.1_1_6:131894422-131900432:+|nuORF	REV__ENST00000498260.1_1_6:131894422-131900432:+|nuORF	MSMS	HCT116MG_D190212_S1	1	485.2965393066406	2	485.295633	968.576714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.102	1	25.102	24.602	25.602	0								0	0	0	0.74436	1	9015	9015		16.942	2.104	1		+		13524	11638	8079	8123	12979	12979					0.09116868917044485
GVSRPRKELKD	11	Unmodified	_GVSRPRKELKD_					0	0	0		ENST00000586972.1_1_17:40266182-40266371:-|nuORF	ENST00000586972.1_1_17:40266182-40266371:-|nuORF	ENST00000586972.1_1_17:40266182-40266371:-|nuORF	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.917604	1283.73098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.016	1	16.849	16.349	17.349	-0.16664								0	0	0	0.95954	1	5613	5613		1.3296	0.11481	1				13525	9002	8080	8124	12980	12980					0.1004665361174375
GVSSCEDC	8	Unmodified	_GVSSCEDC_					0	0	0		ENST00000418437.1_1_13:21834372-21835116:+|nuORF	ENST00000418437.1_1_13:21834372-21835116:+|nuORF	ENST00000418437.1_1_13:21834372-21835116:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	799.2598266601562	1	799.259681	798.252404	0.72711	0.00058115	-0.39631	-0.00031676	0.33079	0.00026439	799.2591707856628	19.873	0.677	19.921	19.686	20.363	0.048107					16	12	2	0	0	0	0.81097	1	6908	6908		10.183	0.83596	1	9922500			13526	7769	8081	8125	12981	12981					-0.15479187624578117
GVSSCEDC	8	Unmodified	_GVSSCEDC_					0	0	0		ENST00000418437.1_1_13:21834372-21835116:+|nuORF	ENST00000418437.1_1_13:21834372-21835116:+|nuORF	ENST00000418437.1_1_13:21834372-21835116:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	799.259681	798.252404	0.89826	0.00071794	-0.7188	-0.00057451	0.17946	0.00014343	799.2590222942376	19.904	0.4582	19.71	19.486	19.944	-0.19367	-0.094403	-5.7897E-05	NaN	10.183	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10733000			13527	7769	8081	8125							-0.15479187624578117
GVSSESKPE	9	Unmodified	_GVSSESKPE_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	460.2214050292969	2	460.221997	918.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.227	1	26.915	26.415	27.415	-0.3114								0	0	0	0.76834	1	9737	9737		6.7232	0.51738	1				13528	2866	8082	8126	12982	12982					-0.03303692478425546
GVSSGCSSS	9	Unmodified	_GVSSGCSSS_					0	0	0		UBN1|p.S917C|1|0.39|ENSG00000118900|chr16:4875159-4875159|A/T|missense_variant	UBN1|p.S917C|1|0.39|ENSG00000118900|chr16:4875159-4875159|A/T|missense_variant	UBN1|p.S917C|1|0.39|ENSG00000118900|chr16:4875159-4875159|A/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	385.65411376953125	2	385.652893	769.291233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6237	1	9.3686	8.8686	9.8686	-0.25508								0	0	0	0.77008	1	3013	3013		0.6015	0.6015	1				13529	18677	8083	8127	12983	12983					-0.10264138998547878
GVSSHIKLNL	10	Unmodified	_GVSSHIKLNL_					0	0	0			REV__nc|ENSG00000171435|Q6VAB6-2|KSR2	REV__nc|ENSG00000171435|Q6VAB6-2|KSR2	MSMS	HCT116MG_D190212_S1	1	534.31201171875	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.299	1	36.299	35.799	36.799	0								0	0	0	0.92272	1	13527	13527		10.824	1.4765	1		+		13530	13342	8084	8128	12984	12984					0.08285120742925756
GVSSNGIL	8	Unmodified	_GVSSNGIL_					0	0	0			REV__ENSG00000105514|ENST00000222120|RAB3D	REV__ENSG00000105514|ENST00000222120|RAB3D	MULTI-MSMS	HCT116MG_D190212_S1	1	373.7055358886719	2	373.705786	745.397018	-0.14501	-5.4193E-05	-0.17464	-6.5263E-05	-0.31965	-0.00011946	373.7057053300029	32.56	0.20892	32.56	32.43	32.639	0					5	3	2	0	0	0	0.73076	1	12045	12045		19.439	0	1	7778400	+		13531	11259	8085	8129	12985	12985					0.014135649092509084
GVSTFEELKTY	11	Unmodified	_GVSTFEELKTY_					0	0	0		tr|U7SJH6|U7SJH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02199PE=4SV=1	tr|U7SJH6|U7SJH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02199PE=4SV=1	tr|U7SJH6|U7SJH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02199PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	637.247802734375	2	637.319168	1272.62378	0.77842	0.0004961	-3.1389	-0.0020005	-2.3605	-0.0015044	637.3167354369781	32.819	0.15642	32.534	32.456	32.612	-0.28511					4	2	2	0	0	0	0.72139	1	12016	12016		13.906	1.6654	1	1815500			13532	18315	8086	8130	12986	12986					-0.0016236111314356094
GVSTGPAP	8	Unmodified	_GVSTGPAP_					0	0	0			REV__ENST00000371021.4_1_10:99079710-99079944:+|nuORF	REV__ENST00000371021.4_1_10:99079710-99079944:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	685.3518676757812	1	685.351531	684.344254	0.79152	0.00054247	-0.092176	-6.3173E-05	0.69935	0.0004793	685.3512695597495	25.428	1.1968	25.148	24.902	26.099	-0.27958					29	22	2	0	0	0	0.53394	1	9217	9217		38.151	0	1	9477000	+		13533	15160	8087	8131	12987	12987					-0.010543931535835327
GVSTPCLKER	10	Unmodified	_GVSTPCLKER_					0	0	0		nc|ENSG00000133121|Q9Y3M8-5|STARD13;STARD13|p.S964Qfs*4|1|0.28|ENSG00000133121|chr13:33110031-33110031|G/-|frameshift_variant;nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13	nc|ENSG00000133121|Q9Y3M8-5|STARD13	nc|ENSG00000133121|Q9Y3M8-5|STARD13	MSMS	HCT116MG_D190212_S2	2	545.2880249023438	2	545.289691	1088.56483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.372	1	28.042	27.542	28.542	-0.32987								0	0	0	0.85631	1	10346	10346		21.537	4.4241	1				13534	3229	8088	8132	12988	12988					0.024088841115371906
GVSTPGSAVQW	11	Unmodified	_GVSTPGSAVQW_					0	0	0		NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant;ENSG00000161270|ENST00000378910|NPHS1;NPHS1|p.Q839Rfs*8|1|0.46|ENSG00000161270|chr19:35842272-35842272|G/-|frameshift_variant;nc|ENSG00000161270|O60500-2|NPHS1	NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant	NPHS1|p.S1186Vfs*10|1|0.44|ENSG00000161270|chr19:35830883-35830884|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	544.771728515625	2	544.772188	1087.52982	0.5738	0.00031259	-0.28973	-0.00015784	0.28408	0.00015476	544.7719820142036	29.242	1.1484	29.02	28.421	29.57	-0.22195					31	21	2	0	0	0	0.70662	1	10610	10610		19.362	1.2156	1	7498800			13535	4485	8089	8133	12989	12989					-0.010440354247748473
GVSTRLKR	8	Unmodified	_GVSTRLKR_					0	0	0			REV__PCLO|p.R1529L|1|0.52|ENSG00000186472|chr7:82956367-82956367|C/A|missense_variant	REV__PCLO|p.R1529L|1|0.52|ENSG00000186472|chr7:82956367-82956367|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	458.78790283203125	2	458.787976	915.561398	0.34382	0.00015774	-0.035345	-1.6216E-05	0.30847	0.00014152	458.7878679977102	50.831	1.5682	50.517	50.073	51.641	-0.31381					100	29	5	0	0	0	0.87576	1	19561	19561		0.79363	0	1	360040000	+		13536	17398	8090	8134	12990	12990					0.10024002119837405
GVSTVGQEGPH	11	Unmodified	_GVSTVGQEGPH_					0	0	0			REV__ENST00000498822.5_1_3:51996828-51996966:-|nuORF	REV__ENST00000498822.5_1_3:51996828-51996966:-|nuORF	MSMS	HCT116MG_D190212_S4	4	534.2587280273438	2	534.259445	1066.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.203	1	26.892	26.392	27.392	-0.3114								0	0	0	0.93552	1	9727	9727		13.906	2.2658	1		+		13537	16109	8091	8135	12991	12991					-0.026255099471882204
GVSVDSADY	9	Unmodified	_GVSVDSADY_					0	0	0			REV__ENSG00000180758|ENST00000377411|GPR157	REV__ENSG00000180758|ENST00000377411|GPR157	MULTI-MSMS	HCT116MG_D190212_S3	3	456.7005310058594	2	456.700897	911.387241	0.21299	9.7274E-05	-0.47479	-0.00021684	-0.2618	-0.00011956	456.70053331586763	20.237	0.31237	20.285	20.051	20.363	0.048107					6	5	2	0	0	0	0.13706	1	7011	7011		50.855	3.1063	1	3147600	+		13538	13668	8092	8136	12992	12992					-0.07199667886811767
GVSVDSADY	9	Unmodified	_GVSVDSADY_					0	0	0			REV__ENSG00000180758|ENST00000377411|GPR157	REV__ENSG00000180758|ENST00000377411|GPR157	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	456.700897	911.387241	0.15657	7.1505E-05	0.12845	5.8662E-05	0.28501	0.00013017	456.70096542828486	20.765	0.26188	20.386	20.236	20.498	-0.37949	0.050177	0.00020514	NaN	50.855	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4454200	+		13539	13668	8092	8136							-0.07199667886811767
GVSVDSADY	9	Unmodified	_GVSVDSADY_					0	0	0			REV__ENSG00000180758|ENST00000377411|GPR157	REV__ENSG00000180758|ENST00000377411|GPR157	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	456.700897	911.387241	0.21299	9.7274E-05	-0.47479	-0.00021684	-0.2618	-0.00011956	456.70053331586763	20.237	0.31237	20.285	20.051	20.363	0.048107	-0.050177	-0.00034586	NaN	50.855	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3147600	+		13540	13668	8092	8136							-0.07199667886811767
GVSVHVSRPG	10	Unmodified	_GVSVHVSRPG_					0	0	0		ENST00000569471.1_1_16:28880556-28883354:+|nuORF	ENST00000569471.1_1_16:28880556-28883354:+|nuORF	ENST00000569471.1_1_16:28880556-28883354:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	497.7734375	2	497.775065	993.535577	0.43115	0.00021462	-4.3497	-0.0021652	-3.9186	-0.0019506	497.77313182384114	14.999	0.2083	14.999	14.91	15.118	0					5	3	2	0	0	0	0.30738	1	4979	4979		13.906	7.7003	1	1479300			13541	8881	8093	8137	12993	12993					0.03855107877575392
GVSVLISSIS	10	Unmodified	_GVSVLISSIS_					0	0	0		ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	MSMS	HCT116MG_D190212_S4	4	481.2813720703125	2	481.281857	960.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.808	1	53.479	52.979	53.979	-0.32923								0	0	0	0.96377	1	20101	20101		1.6526	0	1				13542	6379	8094	8138	12994	12994					0.06730920866152701
GVSVLYTVTLW	11	Unmodified	_GVSVLYTVTLW_					0	0	0		IL12RB1|p.P237Hfs*5|1|0.35|ENSG00000096996|chr19:18073590-18073590|G/-|frameshift_variant;nc|ENSG00000096996|P42701-3|IL12RB1;IL12RB1|p.Y481Lfs*8|1|0.07|ENSG00000096996|chr19:18066583-18066584|-/A|frameshift_variant;nc|ENSG00000096996|P42701-2|IL12RB1;ENSG00000096996|ENST00000593993|IL12RB1	IL12RB1|p.P237Hfs*5|1|0.35|ENSG00000096996|chr19:18073590-18073590|G/-|frameshift_variant	IL12RB1|p.P237Hfs*5|1|0.35|ENSG00000096996|chr19:18073590-18073590|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	619.3445434570312	2	619.344989	1236.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.366	1	30.082	29.582	30.582	-0.28453								0	0	0	0.84073	1	11161	11161		27.629	2.6378	1				13543	1625	8095	8139	12995	12995					0.06655427371424594
GVSVPEPA	8	Unmodified	_GVSVPEPA_					0	0	0		ENST00000340381.10_1_1:9671892-9673254:+|nuORF	ENST00000340381.10_1_1:9671892-9673254:+|nuORF	ENST00000340381.10_1_1:9671892-9673254:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	755.52685546875	1	755.393396	754.386119	0.97788	0.00073868	0.40956	0.00030938	1.3874	0.0010481	755.3938184970704	41.298	0.52089	41.298	41.029	41.55	0					14	9	2	0	0	0	0.53394	1	15526	15526		38.151	3.9638	1	10850000			13544	7212	8096	8140	12996	12996					-0.0008983746505464296
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	504.26214599609375	2	504.261456	1006.50836	0.38488	0.00019408	0.68911	0.00034749	1.074	0.00054157	504.261924908254	27.676	0.67451	27.676	27.23	27.904	0					18	12	2	0	0	0	0.33066	1	10046	10046		47.749	11.622	1	6379500	+		13545	16286	8097	8141	12997	12997					0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	504.2615051269531	2	504.261456	1006.50836	0.4997	0.00025198	0.37728	0.00019025	0.87698	0.00044223	504.2617600748023	27.916	1.0322	27.574	26.933	27.965	-0.34201					39	19	3	0	0	0	0.23641	2	10248	10010;10248		56.177	12.319	1	36238000	+		13546	16286	8097	8141	12998;12999	12999					0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	504.26171875	2	504.261456	1006.50836	0.36292	0.000183	0.22044	0.00011116	0.58336	0.00029416	504.26154549420255	27.949	1.5624	27.76	26.788	28.351	-0.18847					78	29	4	0	0	0	0.20843	2	10091	9867;10091		58.679	14.821	1	57283000	+		13547	16286	8097	8141	13000;13001	13001					0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1007.5172729492188	1	1007.51564	1006.50836	0.60847	0.00061304	0.10507	0.00010586	0.71354	0.0007189	1007.5155683304256	27.991	1.0415	27.803	27.153	28.194	-0.18847					33	19	3	0	0	0	0.37629	1	10046	10046		43.858	5.6827	1	5568500	+		13548	16286	8097	8141	13002	13002					0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	504.24456787109375	2	504.261456	1006.50836	0.36292	0.000183	0.22044	0.00011116	0.58336	0.00029416	504.26154549420255	27.949	1.5624	27.76	26.788	28.351	-0.18847					78	29	4	0	0	0	0.19481	1	10192	10192		65.235	27.261	1	57283000	+		13549	16286	8097	8141	13003	13003					0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	504.261456	1006.50836	0.38488	0.00019408	0.68911	0.00034749	1.074	0.00054157	504.261924908254	27.676	0.67451	27.676	27.23	27.904	0	-0.022169	0.00037097	NaN	58.679	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6379500	+		13550	16286	8097	8141							0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1007.51564	1006.50836	0.60239	0.00060692	-0.35411	-0.00035678	0.24828	0.00025014	1007.5158259781731	27.856	0.51496	27.514	27.243	27.758	-0.34201	-0.15535	-0.0003629	NaN	43.858	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8336400	+		13551	16286	8097	8141							0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	504.261456	1006.50836	0.4997	0.00025198	0.37728	0.00019025	0.87698	0.00044223	504.2617600748023	27.916	1.0322	27.574	26.933	27.965	-0.34201	-0.12399	5.6475E-05	NaN	58.679	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36238000	+		13552	16286	8097	8141							0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1007.51564	1006.50836	0.60847	0.00061304	0.10507	0.00010586	0.71354	0.0007189	1007.5155683304256	27.991	1.0415	27.803	27.153	28.194	-0.18847	0.13353	9.9734E-05	NaN	43.858	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5568500	+		13553	16286	8097	8141							0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	1007.51564	1006.50836	0.60495	0.0006095	0.0091929	9.262E-06	0.61414	0.00061876	1007.5156804396894	28.014	0.82209	27.691	27.25	28.072	-0.32326	0.02182	3.1357E-06	NaN	43.858	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4505200	+		13554	16286	8097	8141							0.005365795465081646
GVSVPSLHPD	10	Unmodified	_GVSVPSLHPD_					0	0	0			REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	REV__ENST00000527401.5_1_11:45950959-45951256:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	504.261456	1006.50836	0.26976	0.00013603	0.341	0.00017195	0.61076	0.00030798	504.2615822337577	28.114	1.809	27.783	26.67	28.479	-0.33138	0.084213	1.9885E-05	NaN	58.679	86	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60511000	+		13555	16286	8097	8141							0.005365795465081646
GVSVVGGF	8	Unmodified	_GVSVVGGF_					0	0	0		ENSG00000154814|ENST00000285083|OXNAD1;OXNAD1|p.S112P|1|0.18|ENSG00000154814|chr3:16294899-16294899|T/C|missense_variant;ENST00000442255.5_1_3:16313687-16345066:+|nuORF	ENSG00000154814|ENST00000285083|OXNAD1	ENSG00000154814|ENST00000285083|OXNAD1	MULTI-MSMS	HCT116MG_D190212_S3	3	721.3870849609375	1	721.387916	720.38064	0.56528	0.00040778	0.1153	8.3178E-05	0.68058	0.00049096	721.3874534333552	39.396	0.26841	39.094	38.924	39.192	-0.30137					8	4	2	0	0	0	0.76257	1	14640	14640		15.768	4.6538	1	4809400			13556	4230	8098	8142	13004	13004					0.00926483743148765
GVSYKIRKKKP	11	Unmodified	_GVSYKIRKKKP_					0	0	0			REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	652.4117431640625	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.29	1	47.168	46.668	47.668	-0.12175								0	0	0	0.95581	1	18035	18035		3.2813	0.28607	1		+		13557	10330	8099	8143	13005	13005					0.17429595410544607
GVSYKIRKKKP	11	Unmodified	_GVSYKIRKKKP_					0	0	0			REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	652.411865234375	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.405	1	50.233	49.733	50.733	-0.1719								0	0	0	0.95113	1	19316	19316		5.7319	1.7875	1		+		13558	10330	8099	8143	13006	13006					0.17429595410544607
GVSYKIRKKKP	11	Unmodified	_GVSYKIRKKKP_					0	0	0			REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	652.4126586914062	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.684	1	53.495	52.995	53.995	-0.1894								0	0	0	0.95581	1	20651	20651		3.2813	1.9518	1		+		13559	10330	8099	8143	13007	13007					0.17429595410544607
GVSYKIRKKKP	11	Unmodified	_GVSYKIRKKKP_					0	0	0			REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	652.4119873046875	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.722	1	53.533	53.033	54.033	-0.1894								0	0	0	0.95954	1	20666	20666		1.3295	0.13619	1		+		13560	10330	8099	8143	13008	13008					0.17429595410544607
GVSYKIRKKKP	11	Unmodified	_GVSYKIRKKKP_					0	0	0			REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	652.4117431640625	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.403	1	41.101	40.601	41.601	-0.30185								0	0	0	0.95954	1	15401	15401		1.3295	0.87119	1		+		13561	10330	8099	8143	13009	13009					0.17429595410544607
GVSYKIRKKKP	11	Unmodified	_GVSYKIRKKKP_					0	0	0			REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	REV__DBF4|p.Q616Vfs*9|1|0.36|ENSG00000006634|chr7:87907983-87907984|AC/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	652.4110107421875	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.476	1	58.207	57.707	58.707	-0.26932								0	0	0	0.95954	1	22246	22246		1.3295	0.25807	1		+		13562	10330	8099	8143	13010	13010					0.17429595410544607
GVSYPAGY	8	Unmodified	_GVSYPAGY_					0	0	0			REV__ENSG00000119919|ENST00000344586|NKX2-3	REV__ENSG00000119919|ENST00000344586|NKX2-3	MULTI-MSMS	HCT116MG_D190212_S2	2	813.3785400390625	1	813.377746	812.370469	1.011	0.0008223	-0.2611	-0.00021237	0.74988	0.00060993	813.3772864983135	41.707	0.31017	41.638	41.498	41.808	-0.068199					11	5	3	0	0	0	0.73076	1	15788	15788		19.439	0	1	28467000	+		13563	11676	8100	8144	13011	13011					-0.04322123982103676
GVSYPVRGQGE	11	Unmodified	_GVSYPVRGQGE_					0	0	0		ENST00000469080.5_1_X:47104878-47106896:+|nuORF	ENST00000469080.5_1_X:47104878-47106896:+|nuORF	ENST00000469080.5_1_X:47104878-47106896:+|nuORF	MSMS	HCT116MG_D190212_S4	4	574.7885131835938	2	574.78837	1147.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.301	1	17.131	16.631	17.631	-0.17047								0	0	0	0.94416	1	5729	5729		9.3831	0	1				13564	8134	8101	8145	13012	13012					-0.005692480217476259
GVTAGDPVK	9	Unmodified	_GVTAGDPVK_					0	0	0			REV__nc|ENSG00000198753|Q9ULL4-2|PLXNB3	REV__nc|ENSG00000198753|Q9ULL4-2|PLXNB3	MSMS	HCT116MG_D190212_S1	1	422.2317810058594	2	422.232168	842.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.684	1	18.684	18.184	19.184	0								0	0	0	0.74436	1	6437	6437		16.942	3.4344	1		+		13565	14147	8102	8146	13013	13013					0.02225522972048566
GVTCCCEQWT	10	Unmodified	_GVTCCCEQWT_					0	0	0			REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	MULTI-MSMS	HCT116MG_D190212_S2	2	565.2093505859375	2	565.209195	1128.40384	0.4204	0.00023761	-0.17223	-9.7348E-05	0.24816	0.00014026	565.2090504984185	26.411	0.20699	26.05	25.921	26.128	-0.36164					6	3	2	0	0	0	0.72678	1	9578	9578		18.146	0.011366	1	18679000	+		13566	17090	8103	8147	13014	13014					-0.1552294958839866
GVTIQPLKR	9	Unmodified	_GVTIQPLKR_					0	0	0		MRPL15|p.N170Mfs*106|2|0.36|ENSG00000137547|chr8:54142736-54142736|A/-|frameshift_variant;ENSG00000137547|ENST00000260102|MRPL15	MRPL15|p.N170Mfs*106|2|0.36|ENSG00000137547|chr8:54142736-54142736|A/-|frameshift_variant	MRPL15|p.N170Mfs*106|2|0.36|ENSG00000137547|chr8:54142736-54142736|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	506.3173828125	2	506.319109	1010.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.417	1	33.127	32.627	33.627	-0.29013								0	0	0	0.76967	1	12263	12263		2.0598	0.21551	1				13567	3486	8104	8148	13015	13015					0.11877728468175519
GVTIRKHE	8	Unmodified	_GVTIRKHE_					0	0	0		ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	ENSG00000179454|ENST00000396128|KLHL28	MULTI-SECPEP	HCT116MG_D190212_S1	1	469.77825927734375	2	470.272158	938.529764	0.20074	9.4404E-05	0.17476	8.2184E-05	0.3755	0.00017659	470.27214372860857	49.415	0.77367	49.415	49.131	49.905	0					33	14	4	0	0	0	0.32676	1	19001	19001		8.5933	0.68312	1	1202100000			13568	5558	8105	8149	13016	13016					0.058040093658974
GVTIRRLTE	9	Unmodified	_GVTIRRLTE_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	HCT116MG_D190212_S1	1	522.630615234375	2	522.811648	1043.60874	0.48416	0.00025313	0.091478	4.7826E-05	0.57564	0.00030095	522.8114732266479	52.973	0.97729	52.973	52.485	53.462	0					23	18	2	0	0	0	0.26676	1	20292	20292		2.0598	0.40713	1	19462000	+		13569	11700	8106	8150	13017	13017					0.08868236600187629
GVTIRRLTE	9	Unmodified	_GVTIRRLTE_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	HCT116MG_D190212_S4	4	522.810546875	2	522.811648	1043.60874	0.36518	0.00019092	0.049808	2.604E-05	0.41499	0.00021696	522.811551455776	52.427	1.2982	52.087	51.679	52.978	-0.34024					60	24	4	0	0	0	0.61923	2	19466	19466;19707		10.074	10.074	1	33950000	+		13570	11700	8106	8150	13018;13019	13018					0.08868236600187629
GVTKGGKP	8	Unmodified	_GVTKGGKP_					0	0	0			REV__CON__Q1RMK2	REV__CON__Q1RMK2	MSMS	HCT116MG_D190212_S2	2	372.2225341796875	2	372.224146	742.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.747	1	33.554	33.054	34.054	-0.19297								0	0	0	0.8837	1	12533	12533		9.3474	0.75416	1		+	+	13571	10265	8107	8151	13020	13020					0.052218615258084355
GVTLGQRR	8	Unmodified	_GVTLGQRR_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-SECPEP	HCT116MG_D190212_S2	2	443.7475891113281	2	443.764501	885.514448	0.38575	0.00017118	0.38569	0.00017115	0.77144	0.00034234	443.7645552626033	44.715	0.78424	44.63	44.376	45.161	-0.084797					17	14	2	0	0	0	0.32538	1	17074	17074		9.3474	0	1	5964900			13572	3106	8108	8152	13021	13021					0.06711142568701689
GVTLGQRR	8	Unmodified	_GVTLGQRR_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	443.764501	885.514448	0.30385	0.00013484	0.36094	0.00016017	0.66479	0.00029501	443.76459877549354	45.004	0.66989	44.631	44.473	45.143	-0.37326	0.00056475	-6.2893E-06	NaN	5.2307	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3551400			13573	3106	8108	8152							0.06711142568701689
GVTLLGTKSR	10	Unmodified	_GVTLLGTKSR_					0	0	0		ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	MULTI-MSMS	HCT116MG_D190212_S4	4	516.3145751953125	2	516.314023	1030.61349	0.32255	0.00016654	0.20825	0.00010752	0.53079	0.00027406	516.3140058582135	53.763	0.78095	53.434	53.041	53.822	-0.32923					43	14	4	0	0	0	0.87801	1	20004	20004		3.9444	3.9444	1	31306000			13574	5630	8109	8153	13022	13022					0.0994112074295117
GVTLLHLG	8	Unmodified	_GVTLLHLG_					0	0	0			REV__ENSG00000049167|ENST00000676185|ERCC8	REV__ENSG00000049167|ENST00000676185|ERCC8	MSMS	HCT116MG_D190212_S3	3	405.24591064453125	2	405.247621	808.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.348	1	48.032	47.532	48.532	-0.31596								0	0	0	0.8837	1	18181	18181		2.5775	1.7838	1		+		13575	10613	8110	8154	13023	13023					0.06878721076952843
GVTLSISVK	9	Unmodified	_GVTLSISVK_					0	0	0			REV__ENSG00000169306|ENST00000378993|IL1RAPL1	REV__ENSG00000169306|ENST00000378993|IL1RAPL1	MSMS	HCT116MG_D190212_S4	4	452.2778625488281	2	452.279118	902.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.216	1	40.838	40.338	41.338	-0.37732								0	0	0	0.76967	1	15149	15149		2.0598	0.21551	1		+		13576	13237	8111	8155	13024	13024					0.08851242074331367
GVTLVKPQ	8	Unmodified	_GVTLVKPQ_					0	0	0			REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	MSMS	HCT116MG_D190212_S4	4	421.2586975097656	2	421.260728	840.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.787	1	50.432	49.932	50.932	-0.35483								0	0	0	0.8837	1	18881	18881		2.5775	0	1		+		13577	14713	8112	8156	13025	13025					0.08026990248424681
GVTLVQITL	9	Unmodified	_GVTLVQITL_					0	0	0			REV__ENSG00000154734|ENST00000284984|ADAMTS1	REV__ENSG00000154734|ENST00000284984|ADAMTS1	MULTI-MSMS	HCT116MG_D190212_S2	2	472.5147399902344	2	472.294768	942.574983	-0.029003	-1.3698E-05	0.95647	0.00045173	0.92746	0.00043804	472.2951647311347	50.043	0.30618	49.88	49.636	49.942	-0.16369					9	5	3	0	0	0	0.49914	1	19131	19131		16.942	4.4107	1	28422000	+		13578	12684	8113	8157	13026	13026					0.10139815108414041
GVTLVSVTK	9	Unmodified	_GVTLVSVTK_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;ENST00000484268.1_1_7:48352666-48443694:+|nuORF	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MSMS	HCT116MG_D190212_S4	4	452.2776794433594	2	452.279118	902.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.595	1	51.245	50.745	51.745	-0.35028								0	0	0	0.76818	1	19207	19207		7.2892	2.0586	1				13579	5569	8114	8158	13027	13027					0.08851242074319998
GVTLVSVTK	9	Unmodified	_GVTLVSVTK_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;ENST00000484268.1_1_7:48352666-48443694:+|nuORF	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MSMS	HCT116MG_D190212_S4	4	451.82452392578125	2	452.279118	902.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.763	1	51.413	50.913	51.913	-0.35028								0	0	0	0.76967	1	19275	19275		2.0598	0	1				13580	5569	8114	8158	13028	13028					0.08851242074319998
GVTLYEMIAA	10	Unmodified	_GVTLYEMIAA_					0	0	0		ENSG00000185974|ENST00000335678|GRK1	ENSG00000185974|ENST00000335678|GRK1	ENSG00000185974|ENST00000335678|GRK1	MSMS	HCT116MG_D190212_S4	4	534.2763671875	2	534.275718	1066.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.607	1	32.228	31.728	32.728	-0.37924								0	0	0	0.92607	1	11883	11883		10.074	1.3285	1				13581	5861	8115	8159	13029	13029					0.006275611314549678
GVTPPVRRFDL	11	Unmodified	_GVTPPVRRFDL_					0	0	0			REV__ENST00000226094.9_1_17:66537075-66550928:-|nuORF	REV__ENST00000226094.9_1_17:66537075-66550928:-|nuORF	MSMS	HCT116MG_D190212_S4	4	628.8578491210938	2	628.859129	1255.70371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.376	1	61.116	60.616	61.616	-0.2602								0	0	0	0.95581	1	23152	23152		3.2813	1.6287	1		+		13582	11361	8116	8160	13030	13030					0.08608170071374843
GVTPRRAF	8	Unmodified	_GVTPRRAF_					0	0	0			REV__SSX3|p.A15V|1|0.35|ENSG00000165584|chrX:48355206-48355206|G/A|missense_variant	REV__SSX3|p.A15V|1|0.35|ENSG00000165584|chrX:48355206-48355206|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	452.26116943359375	2	452.261594	902.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.905	1	10.715	10.215	11.215	-0.18973								0	0	0	0.8837	1	3358	3358		2.5775	0	1		+		13583	13064	8117	8161	13031	13031					0.05348044057041079
GVTPVAWWPP	10	Unmodified	_GVTPVAWWPP_					0	0	0		TRIM73|p.G199Vfs*80|1|0.12|ENSG00000178809|chr7:75404935-75404935|G/-|frameshift_variant	TRIM73|p.G199Vfs*80|1|0.12|ENSG00000178809|chr7:75404935-75404935|G/-|frameshift_variant	TRIM73|p.G199Vfs*80|1|0.12|ENSG00000178809|chr7:75404935-75404935|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	555.29345703125	2	555.292559	1108.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.347	1	61.087	60.587	61.587	-0.2602								0	0	0	0.96263	1	23141	23141		3.9444	0	1				13584	18665	8118	8162	13032	13032					0.02062350685491765
GVTRPGVR	8	Unmodified	_GVTRPGVR_					0	0	0		ENST00000413137.6_1_22:29663789-29663912:-|nuORF	ENST00000413137.6_1_22:29663789-29663912:-|nuORF	ENST00000413137.6_1_22:29663789-29663912:-|nuORF	MSMS	HCT116MG_D190212_S1	1	421.255615234375	2	421.253769	840.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.348	1	27.348	26.848	27.848	0								0	0	0	0.8396	1	9920	9920		19.439	5.9311	1				13585	7741	8119	8163	13033	13033					0.06635757539993392
GVTRVRTK	8	Unmodified	_GVTRVRTK_					0	0	0			REV__ENST00000358502.9_1_22:36622686-36622779:-|nuORF	REV__ENST00000358502.9_1_22:36622686-36622779:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	916.5695190429688	1	916.568675	915.561398	0.67595	0.00061956	0.0043497	3.9868E-06	0.6803	0.00062354	916.5684857931185	50.716	1.2445	50.361	50.057	51.301	-0.35483					58	23	4	0	0	0	0.86564	1	19035	19035		2.5775	1.7838	1	94442000	+		13586	15060	8120	8164	13034	13034					0.10024002119848774
GVTRVRTK	8	Unmodified	_GVTRVRTK_					0	0	0			REV__ENST00000358502.9_1_22:36622686-36622779:-|nuORF	REV__ENST00000358502.9_1_22:36622686-36622779:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	916.568675	915.561398	0.6983	0.00064004	0.13354	0.0001224	0.83184	0.00076244	916.5685310001786	50.829	0.88763	50.516	50.177	51.065	-0.31381	0.077068	7.3919E-05	NaN	2.5775	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40121000	+		13587	15060	8120	8164							0.10024002119848774
GVTRVRTK	8	Unmodified	_GVTRVRTK_					0	0	0			REV__ENST00000358502.9_1_22:36622686-36622779:-|nuORF	REV__ENST00000358502.9_1_22:36622686-36622779:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	916.568675	915.561398	0.67595	0.00061956	0.0043497	3.9868E-06	0.6803	0.00062354	916.5684857931185	50.716	1.2445	50.361	50.057	51.301	-0.35483	-0.077068	-4.4493E-05	NaN	2.5775	58	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94442000	+		13588	15060	8120	8164							0.10024002119848774
GVTTTIKSL	9	Unmodified	_GVTTTIKSL_					0	0	0			REV__ENST00000424545.2_1_20:62337059-62338084:-|nuORF	REV__ENST00000424545.2_1_20:62337059-62338084:-|nuORF	MSMS	HCT116MG_D190212_S1	1	460.2754821777344	2	460.276575	918.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.915	1	23.915	23.415	24.415	0								0	0	0	0.76575	1	8539	8539		15.847	4.2069	1		+		13589	9973	8121	8165	13035	13035					0.07606938211711167
GVTVIRGRSS	10	Unmodified	_GVTVIRGRSS_					0	0	0			REV__ENSG00000176387|ENST00000326152|HSD11B2	REV__ENSG00000176387|ENST00000326152|HSD11B2	MSMS	HCT116MG_D190212_S1	1	516.3016357421875	2	516.301447	1030.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.591	1	51.591	51.091	52.091	0								0	0	0	0.92917	1	19715	19715		9.3831	0.78985	1		+		13590	13539	8122	8166	13036	13036					0.07427065940373723
GVTYGIGL	8	Unmodified	_GVTYGIGL_					0	0	0			REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF	REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.2182922363281	2	390.218529	778.422505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.615	1	26.253	25.753	26.753	-0.36164								0	0	0	0.8396	1	9637	9637		19.439	4.8573	1		+		13591	13876	8123	8167	13037	13037					0.024430394316595994
GVVAAPLLWG	10	Unmodified	_GVVAAPLLWG_					0	0	0			REV__ENSG00000146205|ENST00000674324|ANO7	REV__ENSG00000146205|ENST00000674324|ANO7	MSMS	HCT116MG_D190212_S1	1	491.7913818359375	2	491.789653	981.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.788	1	50.788	50.288	51.288	0								0	0	0	0.93576	1	19388	19388		7.9102	1.7044	1		+		13592	12478	8124	8168	13038	13038					0.07323252173841865
GVVAARRLRGA	11	Unmodified	_GVVAARRLRGA_					0	0	0			REV__ENST00000303596.2_1_16:67876291-67876393:+|nuORF	REV__ENST00000303596.2_1_16:67876291-67876393:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	563.3516235351562	2	563.351806	1124.68906	0.16804	9.4664E-05	-0.46836	-0.00026385	-0.30032	-0.00016919	563.3514521557419	50.6	0.30981	50.6	50.42	50.73	0					9	5	2	0	0	0	0.74191	1	19318	19318		3.2813	3.2813	1	17919000	+		13593	14802	8125	8169	13039	13039					0.13170142713875066
GVVAELTPINH	11	Unmodified	_GVVAELTPINH_					0	0	0			REV__nc|ENSG00000005844|P20701-3|ITGAL	REV__nc|ENSG00000005844|P20701-3|ITGAL	MSMS	HCT116MG_D190212_S2	2	383.8802795410156	3	383.880267	1148.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.422	1	14.102	13.602	14.602	-0.31952								0	0	0	0.95954	1	4720	4720		1.3296	0.11481	1		+		13594	10479	8126	8170	13040	13040					0.05060799534726357
GVVAGRAP	8	Unmodified	_GVVAGRAP_					0	0	0		ENST00000233027.9_1_3:52804704-52804962:-|nuORF	ENST00000233027.9_1_3:52804704-52804962:-|nuORF	ENST00000233027.9_1_3:52804704-52804962:-|nuORF	MSMS	HCT116MG_D190212_S1	1	363.71563720703125	2	363.716488	725.418422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7724	1	9.7724	9.2724	10.272	0								0	0	0	0.8837	1	2969	2969		2.8892	0	1				13595	6769	8127	8171	13041	13041					0.04472994728598678
GVVAQPAASR	10	Unmodified	_GVVAQPAASR_					0	0	0			REV__ENST00000337205.8_3_20:44416576-44417641:-|nuORF	REV__ENST00000337205.8_3_20:44416576-44417641:-|nuORF	MSMS	HCT116MG_D190212_S4	4	478.2692565917969	2	478.269616	954.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.223	1	27.892	27.392	28.392	-0.33138								0	0	0	0.88261	1	10139	10139		18.146	0	1		+		13596	14954	8128	8172	13042	13042					0.04559705503265832
GVVAQQWARKE	11	Unmodified	_GVVAQQWARKE_					0	0	0			REV__ZNF785|p.R368K|1|0.22|ENSG00000197162|chr16:30582675-30582675|C/T|missense_variant	REV__ZNF785|p.R368K|1|0.22|ENSG00000197162|chr16:30582675-30582675|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	636.3450317382812	2	636.346386	1270.67822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.471	1	45.16	44.66	45.66	-0.31094								0	0	0	0.95521	1	17026	17026		3.5965	0.31518	1		+		13597	18088	8129	8173	13043	13043					0.05370695548913318
GVVARNRA	8	Unmodified	_GVVARNRA_					0	0	0		nc|ENSG00000144535|Q8IYB7-3|DIS3L2;ENST00000464554.5_1_2:232880330-232952439:+|nuORF;nc|ENSG00000144535|Q8IYB7-4|DIS3L2;DIS3L2|p.K227Ifs*29|1|0.06|ENSG00000144535|chr2:232130692-232130693|GG/-|frameshift_variant;DIS3L2|p.S225Rfs*113|1|0.06|ENSG00000144535|chr2:232130690-232130690|T/-|frameshift_variant;nc|ENSG00000144535|Q8IYB7-5|DIS3L2;DIS3L2|p.I516Ffs*15|1|0.43|ENSG00000144535|chr2:232263321-232263321|C/-|frameshift_variant;nc|ENSG00000144535|Q8IYB7-2|DIS3L2;DIS3L2|p.P612Rfs*33|1|0.4|ENSG00000144535|chr2:232329903-232329903|C/-|frameshift_variant;DIS3L2|p.L768Pfs*56|1|0.27|ENSG00000144535|chr2:232334638-232334639|-/C|frameshift_variant;ENSG00000144535|ENST00000325385|DIS3L2	nc|ENSG00000144535|Q8IYB7-3|DIS3L2	nc|ENSG00000144535|Q8IYB7-3|DIS3L2	MULTI-MSMS	HCT116MG_D190212_S2	2	421.75128173828125	2	421.751393	841.488233	-0.11285	-4.7596E-05	-0.24898	-0.00010501	-0.36183	-0.0001526	421.7512376934535	49.417	0.30387	49.263	49.086	49.39	-0.15405					8	5	2	0	0	0	0.84759	1	18942	18942		5.7604	0	1	26239000			13598	9487	8130	8174	13044	13044					0.06114873397223164
GVVARNRE	8	Unmodified	_GVVARNRE_					0	0	0		ENST00000450525.6_1_17:38248437-38248713:+|nuORF	ENST00000450525.6_1_17:38248437-38248713:+|nuORF	ENST00000450525.6_1_17:38248437-38248713:+|nuORF	MSMS	HCT116MG_D190212_S4	4	450.75360107421875	2	450.754133	899.493713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.271	1	44.898	44.398	45.398	-0.37266								0	0	0	0.8837	1	16694	16694		2.8892	0	1				13599	7983	8131	8175	13045	13045					0.03994552189033129
GVVASFGRLL	10	Unmodified	_GVVASFGRLL_					0	0	0		nc|ENSG00000103707|Q96DP5-2|MTFMT;ENST00000558614.1_1_15:65312597-65321867:-|nuORF;ENSG00000103707|ENST00000220058|MTFMT	nc|ENSG00000103707|Q96DP5-2|MTFMT	nc|ENSG00000103707|Q96DP5-2|MTFMT	MSMS	HCT116MG_D190212_S1	1	509.8049621582031	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.362	1	48.362	47.862	48.862	0								0	0	0	0.89194	1	18400	18400		16.942	2.3606	1				13600	1906	8132	8176	13046	13046					0.08902039576844345
GVVASFGRLL	10	Unmodified	_GVVASFGRLL_					0	0	0		nc|ENSG00000103707|Q96DP5-2|MTFMT;ENST00000558614.1_1_15:65312597-65321867:-|nuORF;ENSG00000103707|ENST00000220058|MTFMT	nc|ENSG00000103707|Q96DP5-2|MTFMT	nc|ENSG00000103707|Q96DP5-2|MTFMT	MSMS	HCT116MG_D190212_S4	4	509.8040771484375	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.62	1	48.253	47.753	48.753	-0.36728								0	0	0	0.91906	1	18012	18012		11.64	0.52583	1				13601	1906	8132	8176	13047	13047					0.08902039576844345
GVVATHCI	8	Unmodified	_GVVATHCI_					0	0	0			REV__ENST00000565727.5_1_15:45880002-45880062:+|nuORF	REV__ENST00000565727.5_1_15:45880002-45880062:+|nuORF	MSMS	HCT116MG_D190212_S1	1	400.2093811035156	2	400.210181	798.405809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.643	1	29.643	29.143	30.143	0								0	0	0	0.8837	1	10842	10842		2.8892	0	1		+		13602	16535	8133	8177	13048	13048					-0.0014578472595303538
GVVESRTLHS	10	Unmodified	_GVVESRTLHS_					0	0	0			REV__nc|ENSG00000008382|Q8N594|MPND	REV__nc|ENSG00000008382|Q8N594|MPND	MULTI-MSMS	HCT116MG_D190212_S3	3	542.791015625	2	542.790912	1083.56727	0.674	0.00036584	-0.35627	-0.00019338	0.31773	0.00017246	542.7906135823918	28.636	0.46872	28.43	28.125	28.593	-0.20593					16	8	3	0	0	0	0.67142	1	10388	10388		32.786	32.786	1	13711000	+		13603	10501	8134	8178	13049	13049					0.02883055840857196
GVVESRTLHS	10	Unmodified	_GVVESRTLHS_					0	0	0			REV__nc|ENSG00000008382|Q8N594|MPND	REV__nc|ENSG00000008382|Q8N594|MPND	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	542.790912	1083.56727	0.44785	0.00024309	0.020155	1.094E-05	0.46801	0.00025403	542.7909397536416	28.803	0.51915	28.462	28.107	28.626	-0.34059	0.015918	0.0001865	NaN	32.786	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17866000	+		13604	10501	8134	8178							0.02883055840857196
GVVGPAEG	8	Unmodified	_GVVGPAEG_					0	0	0			REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	REV__ABCA1|p.L2013*|1|0.14|ENSG00000165029|chr9:104788457-104788457|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	685.3523559570312	1	685.351531	684.344254	1.031	0.00070661	-0.4075	-0.00027928	0.62351	0.00042732	685.3511806649065	25.314	1.1463	25.208	24.891	26.037	-0.10618					28	21	2	0	0	0	0.13911	1	9012	9012		86.121	7.6766	1	9026800	+		13605	9815	8135	8179	13050	13050					-0.01054393153572164
GVVGWGGG	8	Unmodified	_GVVGWGGG_					0	0	0			REV__ENST00000447266.6_1_6:76311842-76312094:+|nuORF	REV__ENST00000447266.6_1_6:76311842-76312094:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	688.341552734375	1	688.341301	687.334024	0.47122	0.00032436	0.69885	0.00048105	1.1701	0.00080541	688.34164564275	40.565	0.30613	40.565	40.383	40.69	0					10	5	2	0	0	0	0.87576	1	15240	15240		0.79363	0	1	42650000	+		13606	15684	8136	8180	13051	13051					-0.022149560881302932
GVVGWGGG	8	Unmodified	_GVVGWGGG_					0	0	0			REV__ENST00000447266.6_1_6:76311842-76312094:+|nuORF	REV__ENST00000447266.6_1_6:76311842-76312094:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	688.341301	687.334024	0.47122	0.00032436	0.69885	0.00048105	1.1701	0.00080541	688.34164564275	40.565	0.30613	40.565	40.383	40.69	0	0	0	NaN	0.79363	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42650000	+		13607	15684	8136	8180							-0.022149560881302932
GVVKRRGG	8	Unmodified	_GVVKRRGG_					0	0	0		GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant	GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant	GIGYF1|p.L111Wfs*234|1|0.42|ENSG00000146830|chr7:100687547-100687547|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	828.5166015625	1	828.516245	827.508969	0.77849	0.00064499	0.15071	0.00012487	0.9292	0.00076986	828.516401488317	51.765	0.62379	51.414	50.994	51.618	-0.35028					14	11	2	0	0	0	0.86564	1	19276	19276		2.5775	0	1	2726500			13608	9182	8137	8181	13052	13052					0.08831463776903092
GVVLHIVTVP	10	Unmodified	_GVVLHIVTVP_					0	0	0			REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF	REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF	MSMS	HCT116MG_D190212_S4	4	517.3221435546875	2	517.32386	1032.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.226	1	41.851	41.351	42.351	-0.37565								0	0	0	0.95179	1	15512	15512		4.3292	1.44	1		+		13609	16556	8138	8182	13053	13053					0.11815496753706611
GVVLSAVP	8	Unmodified	_GVVLSAVP_					0	0	0			REV__ENST00000307533.10_1_4:6675831-6676296:+|nuORF	REV__ENST00000307533.10_1_4:6675831-6676296:+|nuORF	MSMS	HCT116MG_D190212_S4	4	371.22735595703125	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.181	1	27.849	27.349	28.349	-0.33138								0	0	0	0.8837	1	10122	10122		6.3541	0	1		+		13610	14816	8139	8183	13054	13054					0.06263629811314786
GVVRKRRIHM	10	Unmodified	_GVVRKRRIHM_					0	0	0			REV__CON__Q32PI4	REV__CON__Q32PI4	MSMS	HCT116MG_D190212_S4	4	626.380126953125	2	626.382583	1250.75061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.977	1	55.665	55.165	56.165	-0.312								0	0	0	0.96911	1	20975	20975		0.45834	0.10771	1		+	+	13611	10268	8140	8184	13055	13055					0.1352675114151225
GVVRSDQVQP	10	Unmodified	_GVVRSDQVQP_					0	0	0			REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF	REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	542.7910766601562	2	542.790912	1083.56727	0.44789	0.00024311	-0.025855	-1.4034E-05	0.42203	0.00022908	542.7907921253989	28.213	0.41635	27.882	27.7	28.116	-0.33138					14	7	3	0	0	0	0.69766	1	10150	10150		30.637	3.0077	1	9491900	+		13612	15873	8141	8185	13056	13056					0.02883055840857196
GVVRSDQVQP	10	Unmodified	_GVVRSDQVQP_					0	0	0			REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF	REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	542.7911376953125	2	542.790912	1083.56727	0.44785	0.00024309	0.020155	1.094E-05	0.46801	0.00025403	542.7909397536416	28.803	0.51915	28.462	28.107	28.626	-0.34059					14	9	2	0	0	0	0.70908	1	10388	10388		29.082	6.3453	1	17866000	+		13613	15873	8141	8185	13057	13057					0.02883055840857196
GVVRSDQVQP	10	Unmodified	_GVVRSDQVQP_					0	0	0			REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF	REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	542.790912	1083.56727	0.36781	0.00019964	0.032397	1.7585E-05	0.4002	0.00021723	542.7908118378778	28.095	0.365	27.907	27.725	28.09	-0.18847	0.012529	3.6031E-05	NaN	30.637	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14390000	+		13614	15873	8141	8185							0.02883055840857196
GVVSYPFDTV	10	Unmodified	_GVVSYPFDTV_					0	0	0		ENSG00000169100|ENST00000381401|SLC25A6	ENSG00000169100|ENST00000381401|SLC25A6	ENSG00000169100|ENST00000381401|SLC25A6	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7332763671875	2	542.27149	1082.52843	0.49599	0.00026896	0.46385	0.00025153	0.95984	0.00052049	542.7729186888362	28.333	0.20732	28.003	27.874	28.081	-0.32987					5	3	2	0	0	0	0.75427	1	10278	10278		15.847	4.2069	1	20544000			13615	5051	8142	8186	13058	13058					-0.009536695135238915
GVVTALVT	8	Unmodified	_GVVTALVT_					0	0	0		ENSG00000065923|ENST00000616978|SLC9A7;ENST00000554295.1_1_12:98849015-98849897:-|nuORF;nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6	ENSG00000065923|ENST00000616978|SLC9A7	ENSG00000065923|ENST00000616978|SLC9A7	MSMS	HCT116MG_D190212_S2	2	380.234130859375	2	380.234179	758.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.743	1	32.532	32.032	33.032	-0.21135								0	0	0	0.43258	1	12125	12125		46.921	2.5139	1				13616	1163	8143	8187	13059	13059					0.06491612465754315
GVVTVTTI	8	Unmodified	_GVVTVTTI_					0	0	0		KCNQ1|p.R401Gfs*18|2|0.35|ENSG00000053918|chr11:2587637-2587637|C/-|frameshift_variant;nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1;KCNQ1-GALNTL6|1|fusion	KCNQ1|p.R401Gfs*18|2|0.35|ENSG00000053918|chr11:2587637-2587637|C/-|frameshift_variant	KCNQ1|p.R401Gfs*18|2|0.35|ENSG00000053918|chr11:2587637-2587637|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	395.2387390136719	2	395.239461	788.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.234	1	26.234	25.734	26.734	0								0	0	0	0.8837	1	9470	9470		2.8892	0	1				13617	1066	8144	8188	13060	13060					0.061675951201777934
GVVTVTTI	8	Unmodified	_GVVTVTTI_					0	0	0		KCNQ1|p.R401Gfs*18|2|0.35|ENSG00000053918|chr11:2587637-2587637|C/-|frameshift_variant;nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1;KCNQ1-GALNTL6|1|fusion	KCNQ1|p.R401Gfs*18|2|0.35|ENSG00000053918|chr11:2587637-2587637|C/-|frameshift_variant	KCNQ1|p.R401Gfs*18|2|0.35|ENSG00000053918|chr11:2587637-2587637|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	395.2386779785156	2	395.239461	788.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.634	1	16.292	15.792	16.792	-0.34183								0	0	0	0.8837	1	5610	5610		2.8892	0	1				13618	1066	8144	8188	13061	13061					0.061675951201777934
GVVVGSAI	8	Unmodified	_GVVVGSAI_					0	0	0			REV__CON__P0C1U8	REV__CON__P0C1U8	MULTI-MSMS	HCT116MG_D190212_S1	1	351.2130432128906	2	351.213246	700.41194	0.011598	4.0734E-06	-0.021606	-7.5885E-06	-0.010008	-3.515E-06	351.2131156810062	21.041	0.2161	21.041	20.956	21.173	0					5	3	2	0	0	0	0.71835	1	7422	7422		20.871	0	1	2125500	+	+	13619	10257	8145	8189	13062	13062					0.04975056777220743
GVVYFNRV	8	Unmodified	_GVVYFNRV_					0	0	0			REV__ENST00000473492.1_1_13:41791330-41800639:-|nuORF	REV__ENST00000473492.1_1_13:41791330-41800639:-|nuORF	MSMS	HCT116MG_D190212_S4	4	477.26507568359375	2	477.263802	952.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.226	1	52.891	52.391	53.391	-0.33473								0	0	0	0.8837	1	19866	19866		2.8892	0.31174	1		+		13620	15889	8146	8190	13063	13063					0.0348950847994729
GVWEKPRRV	9	Unmodified	_GVWEKPRRV_					0	0	0		ENST00000440735.2_2_13:111642507-111642792:+|nuORF;ENST00000261965.7_1_13:113140005-113140284:-|nuORF	ENST00000440735.2_2_13:111642507-111642792:+|nuORF	ENST00000440735.2_2_13:111642507-111642792:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	376.22064208984375	3	376.220847	1125.64071	-0.10597	-3.9868E-05	-0.21397	-8.0501E-05	-0.31994	-0.00012037	376.2207281496988	23.83	0.26157	23.83	23.679	23.941	0					6	4	2	0	0	0	0.61923	1	8548	8548		6.6304	2.4409	1	4457900			13621	7920	8147	8191	13064	13064					0.0829164907397626
GVWEKPRRV	9	Unmodified	_GVWEKPRRV_					0	0	0		ENST00000440735.2_2_13:111642507-111642792:+|nuORF;ENST00000261965.7_1_13:113140005-113140284:-|nuORF	ENST00000440735.2_2_13:111642507-111642792:+|nuORF	ENST00000440735.2_2_13:111642507-111642792:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	376.22088623046875	3	376.220847	1125.64071	-0.067684	-2.5464E-05	0.55853	0.00021013	0.49085	0.00018467	376.5554165042291	24.489	0.20848	24.108	23.979	24.187	-0.38003					6	3	2	0	0	0	0.077982	1	8785	8785		57.249	32.368	1	24894000			13622	7920	8147	8191	13065	13065					0.0829164907397626
GVWLRRLPLCP	11	Unmodified	_GVWLRRLPLCP_					0	0	0			REV__ENST00000381418.8_2_8:21972362-21972542:-|nuORF	REV__ENST00000381418.8_2_8:21972362-21972542:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	655.3833618164062	2	655.381717	1308.74888	0.82174	0.00053855	1.0358	0.00067886	1.8576	0.0012174	655.3822559893903	54.226	0.30703	54.226	54.026	54.333	0					8	5	2	0	0	0	0.74191	1	20736	20736		3.5965	0.60125	1	16911000	+		13623	15280	8148	8192	13066	13066					0.10685697332928612
GVWQHYFMMQ	10	Unmodified	_GVWQHYFMMQ_					0	0	0		ENST00000370495.5_1_10:101372311-101373455:-|nuORF;ENST00000434701.5_1_10:101372314-101379897:-|nuORF;SLC25A28|p.G167Afs*22|1|0.72|ENSG00000155287|chr10:99613716-99613716|C/-|frameshift_variant	ENST00000370495.5_1_10:101372311-101373455:-|nuORF	ENST00000370495.5_1_10:101372311-101373455:-|nuORF	MSMS	HCT116MG_D190212_S2	2	442.8635559082031	3	442.863454	1325.56853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.357	1	11.075	10.575	11.575	-0.28186								0	0	0	0.96911	1	3654	3654		0.15932	0.01943	1				13624	7427	8149	8193	13067	13067					-0.08122769386272921
GVWQRPVI	8	Unmodified	_GVWQRPVI_					0	0	0		ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;CANX|p.D436*|1|0.11|ENSG00000127022|chr5:179722918-179722919|-/T|frameshift_variant	ENSG00000127022|ENST00000247461|CANX	ENSG00000127022|ENST00000247461|CANX	MSMS	HCT116MG_D190212_S2	2	477.7778015136719	2	477.779619	953.544686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.995	1	24.62	24.12	25.12	-0.37521								0	0	0	0.8837	1	8982	8982		14.582	2.0501	1				13625	2954	8150	8194	13068	13068					0.06605501233900668
GVYDGEEH	8	Unmodified	_GVYDGEEH_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S2	2	453.1854553222656	2	453.185414	904.356276	0.073843	3.3465E-05	0.90609	0.00041062	0.97993	0.00044409	453.18533298371716	19.944	0.41444	19.569	19.403	19.817	-0.37503					12	7	3	0	0	0	0.40466	1	6955	6955		49.669	27.922	1	14530000			13626	1637	8151	8195	13069	13069					-0.0997282120104046
GVYDGEEH	8	Unmodified	_GVYDGEEH_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S2	2	905.364501953125	1	905.363552	904.356276	0.72115	0.0006529	0.19188	0.00017372	0.91303	0.00082662	905.3638289474108	19.945	0.15524	19.57	19.455	19.61	-0.37503					4	2	2	0	0	0	0.011228	1	6960	6960		161.89	98.332	1	4767200			13627	1637	8151	8195	13070	13070					-0.0997282120104046
GVYDGEEHSV	10	Unmodified	_GVYDGEEHSV_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S1	1	546.2357788085938	2	546.235635	1090.45672	0.65052	0.00035534	-0.13263	-7.2449E-05	0.51789	0.00028289	546.2355531851028	26.076	0.67756	26.076	25.927	26.605	0					32	12	4	0	0	0	0.0098116	1	9400	9400		149.99	110.04	1	306170000			13628	1637	8152	8196	13071	13071					-0.08489208938021875
GVYDGEEHSV	10	Unmodified	_GVYDGEEHSV_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S1	1	1091.4638671875	1	1091.46399	1090.45672	0.72929	0.00079599	-0.28556	-0.00031168	0.44373	0.00048431	1091.4636950360673	26.063	0.31314	26.063	25.927	26.24	0					11	5	3	0	0	0	0.00034345	1	9416	9416		189.78	123.32	1	29130000			13629	1637	8152	8196	13072	13072					-0.08489208938021875
GVYDGEEHSV	10	Unmodified	_GVYDGEEHSV_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2362060546875	2	546.235635	1090.45672	0.43258	0.00023629	0.12132	6.6269E-05	0.5539	0.00030256	546.235720494606	26.411	0.72719	26.05	25.87	26.597	-0.36164					42	13	5	0	0	0	0.0098116	1	9537	9537		149.99	87.422	1	1415100000			13630	1637	8152	8196	13073	13073					-0.08489208938021875
GVYDGEEHSV	10	Unmodified	_GVYDGEEHSV_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S2	2	1091.4644775390625	1	1091.46399	1090.45672	0.56466	0.00061631	-0.03525	-3.8474E-05	0.52941	0.00057784	1091.463861542	26.411	0.31092	26.05	25.921	26.232	-0.36164					17	5	4	0	0	0	1.3432E-05	1	9557	9557		197.17	137.09	1	184760000			13631	1637	8152	8196	13074	13074					-0.08489208938021875
GVYDGEEHSV	10	Unmodified	_GVYDGEEHSV_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S3	3	546.2357177734375	2	546.235635	1090.45672	0.55855	0.0003051	0.006152	3.3605E-06	0.5647	0.00030846	546.2355843763042	26.326	0.46878	26.177	25.994	26.463	-0.14924					25	8	4	0	0	0	0.0098116	1	9424	9424		149.99	117.21	1	82881000			13632	1637	8152	8196	13075	13075					-0.08489208938021875
GVYDGEEHSV	10	Unmodified	_GVYDGEEHSV_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S3	3	1091.464599609375	1	1091.46399	1090.45672	0.51203	0.00055886	0.10792	0.0001178	0.61996	0.00067666	1091.464119887299	26.314	0.20846	26.165	26.046	26.255	-0.14924					6	3	2	0	0	0	0.0083298	1	9456	9456		158.2	110.45	1	4455200			13633	1637	8152	8196	13076	13076					-0.08489208938021875
GVYDGEEHSV	10	Unmodified	_GVYDGEEHSV_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2357177734375	2	546.235635	1090.45672	0.42876	0.00023421	-0.19232	-0.00010505	0.23644	0.00012915	546.2354966901827	26.508	0.31189	26.208	26.078	26.389	-0.30087					11	5	3	0	0	0	0.047709	1	9454	9454		88.904	59.822	1	8740000			13634	1637	8152	8196	13077	13077					-0.08489208938021875
GVYFMYEAL	9	Unmodified	_GVYFMYEAL_					0	0	0		TTYH3-ADSSL1|1|fusion;ENSG00000185100|ENST00000330877|ADSS1;nc|ENSG00000185100|Q8N142-2|ADSS1	TTYH3-ADSSL1|1|fusion	TTYH3-ADSSL1|1|fusion	MSMS	HCT116MG_D190212_S1	1	364.84033203125	3	364.840533	1091.49977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.792	1	15.792	15.292	16.292	0								0	0	0	0.7696	1	5271	5271		1.1933	0	1				13635	5805	8153	8197	13078	13078					-0.04232110414318413
GVYGDVHRV	9	Unmodified	_GVYGDVHRV_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	HCT116MG_D190212_S1	1	501.26239013671875	2	501.261791	1000.50903	0.23659	0.00011859	0.08629	4.3254E-05	0.32288	0.00016185	501.2618122368288	25.327	0.20816	25.327	25.197	25.405	0					9	3	3	0	0	0	0.0042464	1	9111	9111		147.06	82.823	1	26162000			13636	2630	8154	8198	13079	13079					0.008794189862442181
GVYGDVHRV	9	Unmodified	_GVYGDVHRV_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2619934082031	2	501.261791	1000.50903	0.43276	0.00021693	0.3184	0.0001596	0.75116	0.00037653	501.2618281626566	25.79	0.31073	25.42	25.239	25.55	-0.36914					11	5	3	0	0	0	0.0067688	1	9311	9311		122.18	57.943	1	65077000			13637	2630	8154	8198	13080	13080					0.008794189862442181
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant;PTBP2|p.P452Sfs*10|1|0.17|ENSG00000117569|chr1:96812888-96812889|-/T|frameshift_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1	ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	496.7619934082031	2	496.761623	991.508694	0.50944	0.00025307	-0.33503	-0.00016643	0.17441	8.664E-05	496.76154629493067	31.098	0.41661	31.098	30.919	31.336	0					15	7	3	0	0	0	0.0034935	1	11420	11420		166.45	99.104	1	38984000			13638	9789;9000	8155	8199	13081	13081					0.012599992663922421
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant;PTBP2|p.P452Sfs*10|1|0.17|ENSG00000117569|chr1:96812888-96812889|-/T|frameshift_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1	ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	497.2721252441406	2	496.761623	991.508694	0.51297	0.00025482	-0.30311	-0.00015057	0.20985	0.00010425	496.76150327538346	31.301	0.56792	31.046	30.78	31.348	-0.25487					15	10	2	0	0	0	0.0044301	2	11535	11535;11549		144.35	77.006	1	90744000			13639	9789;9000	8155	8199	13082;13083	13082					0.012599992663922421
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant;PTBP2|p.P452Sfs*10|1|0.17|ENSG00000117569|chr1:96812888-96812889|-/T|frameshift_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1	ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	992.517333984375	1	992.51597	991.508694	0.89628	0.00088957	0.3418	0.00033924	1.2381	0.0012288	992.5158901594658	31.318	0.31001	31.069	30.888	31.198	-0.24883					8	5	2	0	0	0	0.0035933	1	11557	11557		176.84	80.726	1	17567000			13640	9789;9000	8155	8199	13084	13084					0.012599992663922421
GVYKNFRRE	9	Unmodified	_GVYKNFRRE_					0	0	0		TIAM1|p.E385K|1|0.36|ENSG00000156299|chr21:31252000-31252000|C/T|missense_variant	TIAM1|p.E385K|1|0.36|ENSG00000156299|chr21:31252000-31252000|C/T|missense_variant	TIAM1|p.E385K|1|0.36|ENSG00000156299|chr21:31252000-31252000|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	390.2116394042969	3	390.21224	1167.61489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.843	1	11.553	11.053	12.053	-0.28953								0	0	0	0.76998	1	3840	3840		0.96228	0.33545	1				13641	18269	8156	8200	13085	13085					0.03778754831705555
GWGAGTLR	8	Unmodified	_GWGAGTLR_					0	0	0			REV__ENST00000560119.5_1_15:49584731-49620353:+|nuORF	REV__ENST00000560119.5_1_15:49584731-49620353:+|nuORF	MSMS	HCT116MG_D190212_S4	4	409.2180480957031	2	409.219395	816.424236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.597	1	21.379	20.879	21.879	-0.21832								0	0	0	0.8837	1	7465	7465		11.64	2.2929	1		+		13642	12736	8157	8201	13086	13086					0.008680932402739927
GWGSRGVRRS	10	Unmodified	_GWGSRGVRRS_					0	0	0		ENST00000545748.5_1_12:52431545-52431905:+|nuORF	ENST00000545748.5_1_12:52431545-52431905:+|nuORF	ENST00000545748.5_1_12:52431545-52431905:+|nuORF	MSMS	HCT116MG_D190212_S2	2	559.303955078125	2	559.302313	1116.59007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.199	1	11.909	11.409	12.409	-0.28953								0	0	0	0.97045	1	3978	3978		0	0	1				13643	8722	8158	8202	13087	13087					0.03644119748992125
GWHLLARSVPL	11	Unmodified	_GWHLLARSVPL_					0	0	0		ENST00000471056.5_1_X:153209107-153210062:-|nuORF	ENST00000471056.5_1_X:153209107-153210062:-|nuORF	ENST00000471056.5_1_X:153209107-153210062:-|nuORF	MSMS	HCT116MG_D190212_S1	1	624.8662719726562	2	624.864215	1247.71388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.658	1	54.658	54.158	55.158	0								0	0	0	0.95023	1	20967	20967		6.2058	0.9089	1				13644	8151	8159	8203	13088	13088					0.09992777796605878
GWLVASPPP	9	Unmodified	_GWLVASPPP_					0	0	0		ENST00000372483.8_1_9:132388465-132394960:+|nuORF	ENST00000372483.8_1_9:132388465-132394960:+|nuORF	ENST00000372483.8_1_9:132388465-132394960:+|nuORF	MSMS	HCT116MG_D190212_S3	3	462.1466064453125	2	462.252903	922.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.57	1	28.364	27.864	28.864	-0.20593								0	0	0	0.7676	1	10344	10344		9.3474	0	1				13645	7458	8160	8204	13089	13089					0.02690703731366284
GWRRRRWRRRL	11	Unmodified	_GWRRRRWRRRL_					0	0	0		ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	MSMS	HCT116MG_D190212_S1	1	827.499755859375	2	827.498524	1652.9825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.544	1	47.544	47.044	48.044	0								0	0	0	0.96208	1	18067	18067		0	0	1				13646	9071	8161	8205	13090	13090					0.18212354607271664
GWRRRRWRRRL	11	Unmodified	_GWRRRRWRRRL_					0	0	0		ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	MSMS	HCT116MG_D190212_S4	4	827.4991455078125	2	827.498524	1652.9825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.931	1	47.562	47.062	48.062	-0.36907								0	0	0	0.96208	1	17734	17734		0	0	1				13647	9071	8161	8205	13091	13091					0.18212354607271664
GWSSMCPLKFP	11	Unmodified	_GWSSMCPLKFP_					0	0	0		EDA2R|p.G276Efs*55|1|0.39|ENSG00000131080|chrX:66599551-66599551|C/-|frameshift_variant;EDA2R|p.L274Wfs*57|1|0.05|ENSG00000131080|chrX:66599557-66599557|A/-|frameshift_variant	EDA2R|p.G276Efs*55|1|0.39|ENSG00000131080|chrX:66599551-66599551|C/-|frameshift_variant	EDA2R|p.G276Efs*55|1|0.39|ENSG00000131080|chrX:66599551-66599551|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	417.8651123046875	3	418.199955	1251.57804	-0.28348	-0.00011855	-0.21216	-8.8726E-05	-0.49564	-0.00020728	418.19983529131116	18.38	0.31364	18.016	17.799	18.113	-0.36325					7	5	2	0	0	0	0.74191	1	6234	6234		2.6312	0	1	2932000			13648	753	8162	8206	13092	13092					-0.03769001100704372
GWVTDGFSSLK	11	Unmodified	_GWVTDGFSSLK_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	MULTI-MSMS	HCT116MG_D190212_S4	4	599.3029174804688	2	598.800946	1195.58734	1.0546	0.0006315	-0.7755	-0.00046437	0.2791	0.00016713	598.8003802271774	50.109	0.25991	49.75	49.637	49.897	-0.35878					6	4	2	0	0	0	0.51928	1	18621	18621		44.392	22.855	1	5065100			13649	2241	8163	8207	13093	13093					-0.0026319321918890637
GWYIGSMRLYE	11	Unmodified	_GWYIGSMRLYE_					0	0	0			REV__ENST00000489450.1_1_1:76253229-76255866:+|nuORF	REV__ENST00000489450.1_1_1:76253229-76255866:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	688.331787109375	2	687.82918	1373.64381	0.74567	0.0005129	0.67887	0.00046695	1.4245	0.00097984	687.8301569257668	36.717	0.20522	36.333	36.23	36.435	-0.38486					5	3	2	0	0	0	0.71776	1	13466	13466		15.248	2.206	1	1890900	+		13650	12201	8164	8208	13094	13094					-0.02806888654163231
GYACLAYT	8	Unmodified	_GYACLAYT_					0	0	0		ENST00000563785.5_1_16:88722464-88729488:-|nuORF;ENSG00000167508|ENST00000301012|MVD	ENST00000563785.5_1_16:88722464-88729488:-|nuORF	ENST00000563785.5_1_16:88722464-88729488:-|nuORF	MSMS	HCT116MG_D190212_S1	1	431.1922912597656	2	431.194196	860.37384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.504	1	48.504	48.004	49.004	0								0	0	0	0.8837	1	18458	18458		10.183	7.2942	1				13651	4923	8165	8209	13095	13095					-0.06193197199763745
GYCLAYSVSM	10	Unmodified	_GYCLAYSVSM_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	MSMS	HCT116MG_D190212_S2	2	547.2401123046875	2	547.238278	1092.462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.805	1	58.639	58.139	59.139	-0.1653								0	0	0	0.95351	1	22735	22735		3.9444	1.3669	1				13652	5118	8166	8210	13096	13096					-0.0805294467143085
GYDSDSWC	8	Unmodified	_GYDSDSWC_					0	0	0		nc|ENSG00000185008|Q9HCK4-3|ROBO2;nc|ENSG00000185008|Q9HCK4-2|ROBO2;ROBO2|p.K1290Nfs*20|1|0.44|ENSG00000185008|chr3:77634974-77634974|A/-|frameshift_variant;nc|ENSG00000185008|Q9HCK4|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-3|ROBO2	nc|ENSG00000185008|Q9HCK4-3|ROBO2	MULTI-MSMS	HCT116MG_D190212_S3	3	932.3095703125	1	932.309074	931.301797	0.91227	0.00085052	-0.37509	-0.0003497	0.53719	0.00050082	932.308849579915	14.409	0.35209	14.489	14.422	14.775	0.079683					9	6	2	0	0	0	0.87576	1	4671	4671		0.79363	0	1	1567400			13653	9580	8167	8211	13097	13097					-0.1666015634411906
GYEEEDDDEDD	11	Unmodified	_GYEEEDDDEDD_					0	0	0			REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	MSMS	HCT116MG_D190212_S3	3	443.8083801269531	3	444.140758	1329.40044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.859	1	2.9042	2.4042	3.4042	0.045237								0	0	0	0.96208	1	870	870		0	0	1		+		13654	11364	8168	8212	13098	13098					-0.2510797114671277
GYGGGSGF	8	Unmodified	_GYGGGSGF_					0	0	0		CON__Q5XQN5	CON__Q5XQN5	CON__Q5XQN5	MULTI-MSMS	HCT116MG_D190212_S1	1	701.2896118164062	1	701.288931	700.281654	0.76104	0.00053371	0.11857	8.315E-05	0.87961	0.00061686	701.2888400948996	22.246	0.20877	22.246	22.115	22.324	0					6	3	2	0	0	0	0.62454	1	7870	7870		30.198	0	1	5627000		+	13655	579	8169	8213	13099	13099					-0.08047539221752231
GYPGCGGP	8	Unmodified	_GYPGCGGP_					0	0	0		ENST00000598904.5_2_19:39364608-39367043:-|nuORF	ENST00000598904.5_2_19:39364608-39367043:-|nuORF	ENST00000598904.5_2_19:39364608-39367043:-|nuORF	MSMS	HCT116MG_D190212_S4	4	354.1446228027344	2	354.144507	706.27446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.212	1	35.826	35.326	36.326	-0.38558								0	0	0	0.8837	1	13243	13243		6.3541	0.59368	1				13656	9076	8170	8214	13100	13100					-0.09042595093831096
GYYKIFKIVI	10	Unmodified	_GYYKIFKIVI_					0	0	0		tr|U7SMU5|U7SMU5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01829PE=4SV=1	tr|U7SMU5|U7SMU5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01829PE=4SV=1	tr|U7SMU5|U7SMU5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01829PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	415.25390625	3	415.253154	1242.73763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.255	1	39.953	39.453	40.453	-0.30148								0	0	0	0.96291	1	14938	14938		0.77653	0	1				13657	18355	8171	8215	13101	13101					0.12597198510411545
GYYPYYRLDFS	11	Unmodified	_GYYPYYRLDFS_					0	0	0			REV__nc|ENSG00000101892|Q9UN42-2|ATP1B4	REV__nc|ENSG00000101892|Q9UN42-2|ATP1B4	MSMS	HCT116MG_D190212_S4	4	481.8904724121094	3	481.890832	1442.65067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.1	1	52.766	52.266	53.266	-0.33473								0	0	0	0.96111	1	19815	19815		0.50596	0	1		+		13658	11137	8172	8216	13102	13102					-0.052952525019691166
HAASAAVP	8	Unmodified	_HAASAAVP_					0	0	0		ENSG00000205089|ENST00000378731|CCNI2;nc|ENSG00000205089|Q6ZMN8-3|CCNI2;nc|ENSG00000205089|Q6ZMN8-2|CCNI2	ENSG00000205089|ENST00000378731|CCNI2	ENSG00000205089|ENST00000378731|CCNI2	MSMS	HCT116MG_D190212_S3	3	362.1940002441406	2	362.192845	722.371138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.414	1	44.107	43.607	44.607	-0.30759								0	0	0	0.8837	1	16602	16602		2.8892	0	1				13659	6366	8173	8217	13103	13103					-0.0011528454238032282
HAATTVVP	8	Unmodified	_HAATTVVP_					0	0	0			REV__N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant	REV__N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	398.2209167480469	2	398.221603	794.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.585	1	37.284	36.784	37.784	-0.30137								0	0	0	0.73047	1	13927	13927		28.173	1.832	1		+		13660	10834	8174	8218	13104	13104					0.02321557663196927
HADEHRLKY	9	Unmodified	_HADEHRLKY_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MSMS	HCT116MG_D190212_S2	2	389.86016845703125	3	390.200111	1167.5785	-0.27871	-0.00010875	-0.1495	-5.8335E-05	-0.42821	-0.00016709	390.20009356245885	18.762	0.1563	18.399	18.321	18.477	-0.36325					4	2	2	0	0	0	0.069943	1	6458	6458		64.927	46.206	1	5951200			13661	6197	8175	8219	13105	13105					0.0014187793499331747
HADIEREAP	9	Unmodified	_HADIEREAP_					0	0	0		ENSG00000123094|ENST00000689635|RASSF8	ENSG00000123094|ENST00000689635|RASSF8	ENSG00000123094|ENST00000689635|RASSF8	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.8226318359375	2	519.254163	1036.49377	0.23987	0.00012455	1.0546	0.00054762	1.2945	0.00067218	519.2546928339767	23.552	0.31137	23.169	22.988	23.299	-0.38324					7	5	2	0	0	0	0.24195	1	8431	8431		19.257	3.1079	1	7543600			13662	2788	8176	8220	13106	13106					-0.023014926016230675
HADLHRLKY	9	Unmodified	_HADLHRLKY_					0	0	0		ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	384.880615234375	3	384.880602	1151.61998	-0.10585	-4.0739E-05	-0.17621	-6.7822E-05	-0.28206	-0.00010856	384.8805499324174	23.5	0.20734	23.117	22.988	23.195	-0.38324					8	3	3	0	0	0	0.0040527	1	8388	8388		135.86	86.309	1	34752000			13663	6128	8177	8221	13107	13107					0.05023058694314386
HADLHRLKY	9	Unmodified	_HADLHRLKY_					0	0	0		ENST00000523958.5_1_8:23291828-23307413:-|nuORF;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	576.8175048828125	2	576.817264	1151.61998	0.32719	0.00018873	0.14328	8.2648E-05	0.47047	0.00027137	576.8171975550749	23.486	0.20734	23.102	22.987	23.195	-0.38378					5	3	2	0	0	0	0.030039	1	8396	8396		86.332	46.375	1	9548300			13664	6128	8177	8221	13108	13108					0.05023058694314386
HADRNGGA	8	Unmodified	_HADRNGGA_					0	0	0		nc|ENSG00000290796|A4QPB2|LRP5L	nc|ENSG00000290796|A4QPB2|LRP5L	nc|ENSG00000290796|A4QPB2|LRP5L	MULTI-MSMS	HCT116MG_D190212_S2	2	399.1861877441406	2	399.186083	796.357613	0.12631	5.0422E-05	0.29234	0.0001167	0.41865	0.00016712	399.18609381639874	40.821	0.36217	40.751	40.571	40.933	-0.069626					10	6	2	0	0	0	0.83066	1	15429	15429		7.9102	0	1	50832000			13665	9679	8178	8222	13109	13109					-0.04871142321610478
HADVSNQLY	9	Unmodified	_HADVSNQLY_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	HCT116MG_D190212_S1	1	523.748779296875	2	523.748713	1045.48287	0.28133	0.00014734	-0.096891	-5.0746E-05	0.18444	9.6599E-05	523.7487318675635	29.971	0.20771	29.971	29.841	30.049	0					5	3	2	0	0	0	0.063511	1	10998	10998		68.081	37.856	1	8615700			13666	3984	8179	8223	13110	13110					-0.03804894975883144
HAEAGMVI	8	Unmodified	_HAEAGMVI_					0	0	0			REV__ENSG00000120162|ENST00000262244|MOB3B	REV__ENSG00000120162|ENST00000262244|MOB3B	MULTI-MSMS	HCT116MG_D190212_S2	2	827.4095458984375	1	827.408	826.400723	0.8408	0.00069569	1.2512	0.0010353	2.092	0.0017309	827.4089048344329	50.859	0.41361	50.68	50.5	50.914	-0.17868					9	7	2	0	0	0	0.77285	1	19504	19504		14.582	5.2343	1	41864000	+		13667	11688	8180	8224	13111	13111					-0.019420885885551797
HAEATSTS	8	Unmodified	_HAEATSTS_					0	0	0		MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant;ENSG00000184956|ENST00000421673|MUC6	MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant	MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	402.1794128417969	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1362	1	9.1362	8.6362	9.6362	0								0	0	0	0.8837	1	2766	2766		0.69038	0.69038	1				13668	5792	8181	8225	13112	13112					-0.06336803855458584
HAEKTKSRRA	10	Unmodified	_HAEKTKSRRA_					0	0	0			REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF	REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MSMS	HCT116MG_D190212_S2	2	395.2265625	3	395.226661	1182.65815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.005	1	46.883	46.383	47.383	-0.12175								0	0	0	0.95648	1	17920	17920		1.5923	0	1		+		13669	15590	8182	8226	13113	13113					0.07412944608972794
HAFIRERVRQY	11	Unmodified	_HAFIRERVRQY_					0	0	0			REV__nc|ENSG00000172995|Q9UBL0|ARPP21	REV__nc|ENSG00000172995|Q9UBL0|ARPP21	MULTI-MSMS	HCT116MG_D190212_S2	2	737.9077758789062	2	737.904934	1473.79531	1.0776	0.00079517	2.4034	0.0017735	3.481	0.0025686	737.9071716570292	39.02	0.30956	38.935	38.754	39.063	-0.084618					9	5	2	0	0	0	0.74191	1	14682	14682		5.2969	0.39987	1	48034000	+		13670	13410	8183	8227	13114	13114					0.07736853488540874
HAGAIPLL	8	Unmodified	_HAGAIPLL_					0	0	0			REV__ENST00000541899.1_1_11:71816948-71817176:+|nuORF	REV__ENST00000541899.1_1_11:71816948-71817176:+|nuORF	MSMS	HCT116MG_D190212_S4	4	396.24359130859375	2	396.242338	790.470124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.819	1	55.507	55.007	56.007	-0.312								0	0	0	0.8837	1	20911	20911		0.79363	0	1		+		13671	14814	8184	8228	13115	13115					0.06650738422524682
HAGGAPCP	8	Unmodified	_HAGGAPCP_					0	0	0			REV__ENST00000428849.6_1_6:33372813-33372900:+|nuORF	REV__ENST00000428849.6_1_6:33372813-33372900:+|nuORF	MSMS	HCT116MG_D190212_S2	2	355.06951904296875	2	355.157948	708.301344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.262	1	19.882	19.382	20.382	-0.37949								0	0	0	0.8837	1	7073	7073		11.114	4.7604	1		+		13672	15570	8185	8229	13116	13116					-0.06447486482647946
HAGPGPKL	8	Unmodified	_HAGPGPKL_					0	0	0			REV__ENSG00000177947|ENST00000325113|ODF3	REV__ENSG00000177947|ENST00000325113|ODF3	MULTI-SECPEP	HCT116MG_D190212_S2	2	389.19976806640625	2	388.724313	775.434072	-0.194	-7.5413E-05	0.35866	0.00013942	0.16465	6.4005E-05	388.72432523649496	18.293	0.20904	17.93	17.799	18.008	-0.36325					6	3	2	0	0	0	0.29766	1	6281	6281		20.871	10.688	1	17555000	+		13673	13586	8186	8230	13117	13117					0.03737281245662416
HAIYEEITA	9	Unmodified	_HAIYEEITA_					0	0	0		ENST00000534803.1_1_11:35474916-35547133:-|nuORF;PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	523.7615966796875	2	523.761289	1045.50803	0.15176	7.9485E-05	0.67265	0.00035231	0.8244	0.00043179	523.7614526424995	40.923	0.33891	40.923	40.742	41.081	0					10	6	2	0	0	0	0.057285	1	15399	15399		71.134	9.7761	1	49912000			13674	4040	8187	8231	13118	13118					-0.01290840173351171
HAIYEEITA	9	Unmodified	_HAIYEEITA_					0	0	0		ENST00000534803.1_1_11:35474916-35547133:-|nuORF;PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	523.7612915039062	2	523.761289	1045.50803	0.42327	0.00022169	-0.52963	-0.0002774	-0.10636	-5.5708E-05	523.7612086046029	40.924	0.51608	40.855	40.673	41.19	-0.069626					23	9	4	0	0	0	0.035914	1	15449	15449		81.613	19.04	1	248660000			13675	4040	8187	8231	13119	13119					-0.01290840173351171
HAIYEEITA	9	Unmodified	_HAIYEEITA_					0	0	0		ENST00000534803.1_1_11:35474916-35547133:-|nuORF;PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1046.515869140625	1	1046.5153	1045.50803	0.78388	0.00082035	0.39905	0.00041761	1.1829	0.001238	1046.515756551113	40.924	0.20781	40.855	40.725	40.933	-0.069626					6	3	2	0	0	0	0.12994	1	15474	15474		52.268	6.2474	1	19882000			13676	4040	8187	8231	13120	13120					-0.01290840173351171
HAIYEEITA	9	Unmodified	_HAIYEEITA_					0	0	0		ENST00000534803.1_1_11:35474916-35547133:-|nuORF;PAMR1|p.V621Gfs*11|1|0.43|ENSG00000149090|chr11:35432657-35432658|-/C|frameshift_variant;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	523.7613525390625	2	523.761289	1045.50803	0.39789	0.0002084	-0.04376	-2.292E-05	0.35413	0.00018548	523.7612407233404	41.162	0.36546	40.861	40.632	40.997	-0.30185					16	6	4	0	0	0	0.035914	1	15301	15301		81.613	20.256	1	25307000			13677	4040	8187	8231	13121	13121					-0.01290840173351171
HALQSGPVRP	10	Unmodified	_HALQSGPVRP_					0	0	0			REV__ENST00000530238.5_1_11:66105966-66109705:-|nuORF	REV__ENST00000530238.5_1_11:66105966-66109705:-|nuORF	MSMS	HCT116MG_D190212_S1	1	531.2474975585938	2	531.296165	1060.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.681	1	24.681	24.181	25.181	0								0	0	0	0.86471	1	8846	8846		20.454	3.5113	1		+		13678	16306	8188	8232	13122	13122					0.04991083285949571
HAMGIAPP	8	Unmodified	_HAMGIAPP_					0	0	0		ENSG00000117360|ENST00000324862|PRPF3;PRPF3|p.F311Lfs*69|1|0.18|ENSG00000117360|chr1:150335134-150335134|T/-|frameshift_variant;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;nc|ENSG00000117360|O43395-3|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MSMS	HCT116MG_D190212_S3	3	397.2033996582031	2	397.204899	792.395244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.518	1	25.412	24.912	25.912	-0.10618								0	0	0	0.8837	1	9114	9114		11.114	4.7604	1				13679	2571	8189	8233	13123	13123					-0.009257673803745092
HANPECRY	8	Unmodified	_HANPECRY_					0	0	0		ENSG00000073536|ENST00000442241|NLE1	ENSG00000073536|ENST00000442241|NLE1	ENSG00000073536|ENST00000442241|NLE1	MULTI-MSMS	HCT116MG_D190212_S1	1	495.2171630859375	2	495.216526	988.418499	0.39326	0.00019475	0.96062	0.00047572	1.3539	0.00067046	495.21707362350605	31.706	0.36491	31.706	31.492	31.857	0					13	6	3	0	0	0	0.78216	1	11668	11668		13.508	1.8676	1	7855700			13680	1286	8190	8234	13124	13124					-0.0761737333371002
HARRDRVLA	9	Unmodified	_HARRDRVLA_					0	0	0			REV__nc|nan|Q8IYJ2-2|C10orf67	REV__nc|nan|Q8IYJ2-2|C10orf67	MSMS	HCT116MG_D190212_S4	4	365.217041015625	3	365.216096	1092.62646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.288	1	57.999	57.499	58.499	-0.28879								0	0	0	0.76967	1	21903	21903		2.7352	1.9587	1		+		13681	13629	8191	8235	13125	13125					0.08384996645713727
HARRFGVRAA	10	Unmodified	_HARRFGVRAA_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK;ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;POLK|p.K571Nfs*18|1|0.29|ENSG00000122008|chr5:75596401-75596401|A/-|frameshift_variant	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MSMS	HCT116MG_D190212_S1	1	570.8289794921875	2	570.828498	1139.64244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.983	1	10.983	10.483	11.483	0								0	0	0	0.97116	1	3416	3416		0	0	1				13682	2745	8192	8236	13126	13126					0.07820702882622754
HARRRPQRRWE	11	Unmodified	_HARRRPQRRWE_					0	0	0		ENST00000261692.6_1_12:123751765-123756364:-|nuORF	ENST00000261692.6_1_12:123751765-123756364:-|nuORF	ENST00000261692.6_1_12:123751765-123756364:-|nuORF	MSMS	HCT116MG_D190212_S2	2	774.4330444335938	2	774.429973	1546.84539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.657	1	40.587	40.087	41.087	-0.069626								0	0	0	0.95731	1	15339	15339		2.4985	1.3051	1				13683	6855	8193	8237	13127	13127					0.09384400937051396
HASLLGQP	8	Unmodified	_HASLLGQP_					0	0	0			REV__ENST00000510304.2_2_5:139970534-139970724:-|nuORF	REV__ENST00000510304.2_2_5:139970534-139970724:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	411.72705078125	2	411.727052	821.439552	0.029139	1.1997E-05	0.30639	0.00012615	0.33553	0.00013815	411.727031043476	22.761	1.0959	22.523	21.978	23.074	-0.23758					31	20	2	0	0	0	0.81097	1	8115	8115		10.183	0	1	5159900	+		13684	16174	8194	8238	13128	13128					0.021689600374770635
HATSSATE	8	Unmodified	_HATSSATE_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MSMS	HCT116MG_D190212_S4	4	402.179931640625	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9588	1	1.6943	1.1943	2.1943	-0.26456								0	0	0	0.8837	1	599	599		0.79363	0	1		+		13685	14099	8195	8239	13129	13129					-0.06336803855469952
HCAKGRFRDCN	11	Unmodified	_HCAKGRFRDCN_					0	0	0			REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF	REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF	MSMS	HCT116MG_D190212_S2	2	653.5668334960938	2	653.798223	1305.58189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.318	1	34.143	33.643	34.643	-0.17512								0	0	0	0.9465	1	12764	12764		8.1555	1.4324	1		+		13686	16688	8196	8240	13130	13130					-0.05867518554259732
HCCHGCCP	8	Unmodified	_HCCHGCCP_					0	0	0			REV__ENST00000462054.6_2_X:53295593-53296058:-|nuORF	REV__ENST00000462054.6_2_X:53295593-53296058:-|nuORF	MSMS	HCT116MG_D190212_S2	2	430.12847900390625	2	430.126953	858.239354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.499	1	52.312	51.812	52.812	-0.18725								0	0	0	0.8837	1	20169	20169		0.79363	0.79363	1		+		13687	15792	8197	8241	13131	13131					-0.19543620489309887
HCCSACSME	9	Unmodified	_HCCSACSME_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S1	1	970.2885131835938	1	970.288555	969.281278	0.59391	0.00057626	-0.095651	-9.2809E-05	0.49826	0.00048345	970.2883298134783	25.175	1.9306	25.175	24.987	26.918	0					67	36	3	0	0	0	0.74607	1	9254	9254		2.0598	0	1	39005000			13688	3992	8198	8242	13132	13132					-0.20459109591433844
HCCSACSME	9	Unmodified	_HCCSACSME_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S3	3	970.2885131835938	1	970.288555	969.281278	0.65887	0.0006393	-0.25496	-0.00024739	0.40391	0.00039191	970.2881013079424	25.615	2.1352	25.488	25.078	27.213	-0.12795					75	40	3	0	0	0	0.74607	3	9073	9073;9319;9577		2.0598	0	1	19612000			13689	3992	8198	8242	13133;13134;13135	13133					-0.20459109591433844
HCCSACSME	9	Unmodified	_HCCSACSME_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S4	4	970.2891235351562	1	970.288555	969.281278	0.64214	0.00062306	-0.27265	-0.00026455	0.36949	0.00035851	970.2881093019263	25.529	1.9763	25.249	24.902	26.878	-0.27958					74	37	3	0	0	0	0.74607	3	8972	8972;9196;9429		2.0598	0	1	21268000			13690	3992	8198	8242	13136;13137;13138	13136					-0.20459109591433844
HCECMWLYY	9	Unmodified	_HCECMWLYY_					0	0	0			REV__ENST00000567535.5_1_15:75287957-75305364:+|nuORF	REV__ENST00000567535.5_1_15:75287957-75305364:+|nuORF	MSMS	HCT116MG_D190212_S1	1	624.236572265625	2	624.237755	1246.46096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.271	1	10.271	9.7712	10.771	0								0	0	0	0.77008	1	3141	3141		0.6015	0	1		+		13691	16552	8199	8243	13139	13139					-0.15241482311989785
HCHCYCHG	8	Unmodified	_HCHCYCHG_					0	0	0			REV__ENST00000436731.6_1_X:152128403-152132433:+|nuORF	REV__ENST00000436731.6_1_X:152128403-152132433:+|nuORF	MSMS	HCT116MG_D190212_S2	2	480.4996337890625	2	480.157099	958.299646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2008	1	1.1945	0.69453	1.6945	-0.0062599								0	0	0	0.8837	1	391	391		0	0	1		+		13692	15628	8200	8244	13140	13140					-0.18117186834558652
HCHCYCHG	8	Unmodified	_HCHCYCHG_					0	0	0			REV__ENST00000436731.6_1_X:152128403-152132433:+|nuORF	REV__ENST00000436731.6_1_X:152128403-152132433:+|nuORF	MSMS	HCT116MG_D190212_S4	4	480.1572265625	2	480.157099	958.299646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6868	1	4.4222	3.9222	4.9222	-0.26456								0	0	0	0.8837	1	1432	1432		0	0	1		+		13693	15628	8200	8244	13141	13141					-0.18117186834558652
HCHIVCNDT	9	Unmodified	_HCHIVCNDT_					0	0	0			REV__ENST00000589184.5_1_17:42266304-42268229:+|nuORF	REV__ENST00000589184.5_1_17:42266304-42268229:+|nuORF	MSMS	HCT116MG_D190212_S1	1	521.2169189453125	2	521.215669	1040.41678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.095	1	35.095	34.595	35.595	0								0	0	0	0.7689	1	13043	13043		4.756	0.42677	1		+		13694	13207	8201	8245	13142	13142					-0.101807504139515
HCHSSGLP	8	Unmodified	_HCHSSGLP_					0	0	0		ENSG00000233232|ENST00000452313|NPIPB7	ENSG00000233232|ENST00000452313|NPIPB7	ENSG00000233232|ENST00000452313|NPIPB7	MSMS	HCT116MG_D190212_S4	4	419.1886901855469	2	419.187237	836.359921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.153	1	50.798	50.298	51.298	-0.35483								0	0	0	0.8837	1	19029	19029		0.79363	0	1				13695	6513	8202	8246	13143	13143					-0.06480429908174301
HCMAWSDE	8	Unmodified	_HCMAWSDE_					0	0	0			REV__ENST00000377270.7_1_9:71687674-71687986:+|nuORF	REV__ENST00000377270.7_1_9:71687674-71687986:+|nuORF	MSMS	HCT116MG_D190212_S3	3	489.67645263671875	2	489.675845	977.337137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.094	1	13.163	12.663	13.663	0.069158								0	0	0	0.8837	1	4131	4131		0.79363	0	1		+		13696	15236	8203	8247	13144	13144					-0.15243817087957723
HCPSFHSNPR	10	Unmodified	_HCPSFHSNPR_					0	0	0		ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	MSMS	HCT116MG_D190212_S1	1	394.51446533203125	3	394.513813	1180.51961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.575	1	16.575	16.075	17.075	0								0	0	0	0.95776	1	5587	5587		1.4551	0	1				13697	8218	8204	8248	13145	13145					-0.0634292163099417
HCRDRWHHIFC	11	Unmodified	_HCRDRWHHIFC_					0	0	0			REV__ENSG00000261794|ENST00000566740|GOLGA8H	REV__ENSG00000261794|ENST00000566740|GOLGA8H	MSMS	HCT116MG_D190212_S1	1	503.8963317871094	3	503.896152	1508.66663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.9	1	10.9	10.4	11.4	0								0	0	0	0.96208	1	3383	3383		0	0	1		+		13698	14421	8205	8249	13146	13146					-0.06736148017694177
HCSSRRPEGPD	11	Unmodified	_HCSSRRPEGPD_					0	0	0			REV__ENST00000465259.5_2_3:148802586-148804211:-|nuORF	REV__ENST00000465259.5_2_3:148802586-148804211:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	620.3168334960938	2	620.77801	1239.54147	0.47553	0.0002952	-0.57624	-0.00035772	-0.10071	-6.2519E-05	621.2788622609357	23.633	0.51994	23.249	22.988	23.508	-0.38324					12	9	2	0	0	0	0.35292	1	8523	8523		15.248	1.3424	1	5801500	+		13699	15820	8206	8250	13147	13147					-0.06872161673072696
HCVSTSLT	8	Unmodified	_HCVSTSLT_					0	0	0		ENST00000263253.8_1_22:41573696-41573927:+|nuORF	ENST00000263253.8_1_22:41573696-41573927:+|nuORF	ENST00000263253.8_1_22:41573696-41573927:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	424.20257568359375	2	424.202553	846.390553	-0.19061	-8.0857E-05	-0.23891	-0.00010135	-0.42952	-0.0001822	424.2029242970357	48.379	0.56622	48.379	48.1	48.666	0					28	10	3	0	0	0	0.87576	1	18377	18377		0.79363	0	1	18173000			13700	6877	8207	8251	13148	13148					-0.03878696313779528
HDCSCGGP	8	Unmodified	_HDCSCGGP_					0	0	0			REV__SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	REV__SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	388.12799072265625	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.828	1	16.913	16.413	17.413	0.084467								0	0	0	0.8837	1	5612	5612		0.79363	0	1		+		13701	13600	8208	8252	13149	13149					-0.15364330839281592
HDCSCGGP	8	Unmodified	_HDCSCGGP_					0	0	0			REV__SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	REV__SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	388.1277160644531	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.029	1	63.795	63.295	64.295	-0.23411								0	0	0	0.8837	1	24118	24118		0.79363	0.10326	1		+		13702	13600	8208	8252	13150	13150					-0.15364330839281592
HDDSCSGG	8	Unmodified	_HDDSCSGG_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MSMS	HCT116MG_D190212_S3	3	389.1117858886719	2	389.127042	776.239531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.10491	1	0.16582	-0.33418	0.66582	0.060905								0	0	0	0.8837	1	42	42		0	0	1		+		13703	13090	8209	8253	13151	13151					-0.15753882692433763
HDDSCSGG	8	Unmodified	_HDDSCSGG_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MSMS	HCT116MG_D190212_S3	3	389.1121520996094	2	389.127042	776.239531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6876	1	1.7485	1.2485	2.2485	0.060905								0	0	0	0.8837	1	525	525		0	0	1		+		13704	13090	8209	8253	13152	13152					-0.15753882692433763
HDESHCDD	8	Unmodified	_HDESHCDD_					0	0	0			REV__ENST00000324607.7_1_6:20131379-20144510:-|nuORF	REV__ENST00000324607.7_1_6:20131379-20144510:-|nuORF	MSMS	HCT116MG_D190212_S3	3	479.1537780761719	2	479.153788	956.293023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7434	1	8.764	8.264	9.264	0.020599								0	0	0	0.8837	1	2640	2640		0	0	1		+		13705	14899	8210	8254	13153	13153					-0.18687129980594364
HDGTVHTIQ	9	Unmodified	_HDGTVHTIQ_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	HCT116MG_D190212_S2	2	504.6990051269531	2	504.24888	1006.48321	0.43872	0.00022123	-0.1751	-8.8292E-05	0.26363	0.00013293	504.24872852524896	21.112	0.20838	20.729	20.598	20.807	-0.38288					6	3	2	0	0	0	0.26009	1	7373	7373		10.824	0.75	1	18523000			13706	4541	8211	8255	13154	13154					-0.01977475256046546
HDITLAELL	9	Unmodified	_HDITLAELL_					0	0	0			REV__ENSG00000183273|ENST00000327554|CCDC60	REV__ENSG00000183273|ENST00000327554|CCDC60	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7874145507812	2	512.787307	1023.56006	0.16127	8.2698E-05	0.23125	0.00011858	0.39253	0.00020128	512.7873512109345	54.651	0.2092	54.355	54.243	54.452	-0.29587					5	3	2	0	0	0	0.2682	1	20730	20730		34.102	0	1	5872900	+		13707	13754	8212	8256	13155	13155					0.04922323240418791
HDKHWHQEYQ	10	Unmodified	_HDKHWHQEYQ_					0	0	0			REV__CHD2|p.Y1670H|1|0.23|ENSG00000173575|chr15:93020113-93020113|T/C|missense_variant	REV__CHD2|p.Y1670H|1|0.23|ENSG00000173575|chr15:93020113-93020113|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	704.3128662109375	2	704.313074	1406.6116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.582	1	28.252	27.752	28.752	-0.32987								0	0	0	0.91279	1	10432	10432		13.042	2.9685	1		+		13708	10168	8213	8257	13156	13156					-0.07544540012963807
HDMLAQFCHHF	11	Unmodified	_HDMLAQFCHHF_					0	0	0			REV__APPBP2|p.L79F|1|0.44|ENSG00000062725|chr17:60494610-60494610|G/A|missense_variant	REV__APPBP2|p.L79F|1|0.44|ENSG00000062725|chr17:60494610-60494610|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	693.29541015625	2	693.297524	1384.5805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.681	1	13.755	13.255	14.255	0.074899								0	0	0	0.95954	1	4355	4355		1.3295	0.87119	1		+		13709	9967	8214	8258	13157	13157					-0.09641152643075657
HDPHPLSEHV	10	Unmodified	_HDPHPLSEHV_					0	0	0			REV__ABCB6|p.G319Wfs*115|1|0.24|ENSG00000115657|chr2:219216380-219216381|-/C|frameshift_variant	REV__ABCB6|p.G319Wfs*115|1|0.24|ENSG00000115657|chr2:219216380-219216381|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	584.7381591796875	2	584.280712	1166.54687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.816	1	19.876	19.376	20.376	0.05983								0	0	0	0.87399	1	6818	6818		19.257	0.88389	1		+		13710	9824	8215	8259	13158	13158					-0.029741148189714295
HDPLFRLWCHI	11	Unmodified	_HDPLFRLWCHI_					0	0	0			REV__DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	REV__DNAH5|p.I2945Rfs*76|1|0.07|ENSG00000039139|chr5:13780948-13780949|-/CATTTCTCTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	718.8670654296875	2	718.866431	1435.71831	0.68453	0.00049209	1.3844	0.00099523	2.069	0.0014873	719.3692551825854	51.575	0.20067	51.575	51.451	51.652	0					8	3	3	0	0	0	0.69738	1	19725	19725		29.082	0	1	47340000	+		13711	10384	8216	8260	13159	13159					0.017879189478662738
HDRGKRIIV	9	Unmodified	_HDRGKRIIV_					0	0	0			REV__nc|ENSG00000060656|Q92729|PTPRU	REV__nc|ENSG00000060656|Q92729|PTPRU	MSMS	HCT116MG_D190212_S4	4	547.3336181640625	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.573	1	59.296	58.796	59.796	-0.27731								0	0	0	0.7696	1	22421	22421		2.3027	0.4585	1		+		13712	17072	8217	8261	13160	13160					0.10899051448268438
HDSESCDM	8	Unmodified	_HDSESCDM_					0	0	0			REV__ENST00000520647.5_1_5:153789305-153796529:+|nuORF	REV__ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MSMS	HCT116MG_D190212_S1	1	462.14654541015625	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.323	1	43.323	42.823	43.823	0								0	0	0	0.8837	1	16364	16364		0.79363	0	1		+		13713	13011	8218	8262	13161	13161					-0.18456704084189823
HDSESCDM	8	Unmodified	_HDSESCDM_					0	0	0			REV__ENST00000520647.5_1_5:153789305-153796529:+|nuORF	REV__ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MSMS	HCT116MG_D190212_S1	1	462.1468505859375	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.558	1	50.558	50.058	51.058	0								0	0	0	0.8837	1	19294	19294		2.5775	1.7838	1		+		13714	13011	8218	8262	13162	13162					-0.18456704084189823
HEADVDVLM	9	Oxidation (M)	_HEADVDVLM(Oxidation (M))_		HEADVDVLM(1)		HEADVDVLM(48)	0	0	1		nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	MSMS	HCT116MG_D190212_S1	1	522.7369384765625	2	522.736957	1043.45936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.087	1	33.087	32.587	33.587	0								0	0	0	0.18646	1	12232	12232		48.346	14.159	1				13715	2809	8219	8263	13163	13163		58			-0.06063076804753109
HEADVDVLM	9	Unmodified	_HEADVDVLM_					0	0	0		nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	MSMS	HCT116MG_D190212_S1	1	514.73974609375	2	514.739499	1027.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.473	1	42.473	41.973	42.973	0								0	0	0	0.0081784	1	16020	16020		109.63	73.585	1				13716	2809	8219	8264	13164	13164					-0.04818772942144278
HEADVDVLM	9	Unmodified	_HEADVDVLM_					0	0	0		nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	MSMS	HCT116MG_D190212_S2	2	514.7401123046875	2	514.739499	1027.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.484	1	42.414	41.914	42.914	-0.069984								0	0	0	0.0081784	1	16081	16081		109.63	67.535	1				13717	2809	8219	8264	13165	13165					-0.04818772942144278
HEADVDVLM	9	Unmodified	_HEADVDVLM_					0	0	0		nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	MSMS	HCT116MG_D190212_S3	3	514.7398681640625	2	514.739499	1027.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.758	1	42.454	41.954	42.954	-0.30408								0	0	0	0.32721	1	15938	15938		38.151	23.569	1				13718	2809	8219	8264	13166	13166					-0.04818772942144278
HEAEFYGITP	10	Unmodified	_HEAEFYGITP_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;KCTD3|p.R348Afs*5|1|0.41|ENSG00000136636|chr1:215602097-215602098|-/C|frameshift_variant;KCTD3|p.G267Efs*15|1|0.26|ENSG00000136636|chr1:215586664-215586664|G/-|frameshift_variant	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	HCT116MG_D190212_S2	2	582.32470703125	2	582.272021	1162.52949	0.69314	0.0004036	-0.13182	-7.6754E-05	0.56132	0.00032684	582.7734117079384	44.521	0.41741	44.436	44.325	44.743	-0.084797					15	7	3	0	0	0	0.016539	2	16971	16925;16971		128.37	97.729	1	16910000			13719	3426	8220	8265	13167;13168	13168					-0.04527455144625492
HEAEGHIV	8	Unmodified	_HEAEGHIV_					0	0	0		ENST00000468770.1_1_22:24953642-24953888:+|nuORF;nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENST00000468770.1_1_22:24953642-24953888:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	446.2197570800781	2	446.219591	890.42463	0.11864	5.2938E-05	0.4995	0.00022289	0.61814	0.00027583	446.21975274089897	21.216	0.20741	20.833	20.703	20.91	-0.38288					5	3	2	0	0	0	0.58007	1	7484	7484		34.102	10.954	1	10719000			13720	1656	8221	8266	13169	13169					-0.02496531830524873
HEAGGCCY	8	Unmodified	_HEAGGCCY_					0	0	0		ENST00000381106.4_1_X:3838621-3838783:-|nuORF	ENST00000381106.4_1_X:3838621-3838783:-|nuORF	ENST00000381106.4_1_X:3838621-3838783:-|nuORF	MSMS	HCT116MG_D190212_S1	1	420.1441650390625	2	420.144181	838.273808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.218	1	63.218	62.718	63.718	0								0	0	0	0.8837	1	24424	24424		0	0	1				13721	7573	8222	8267	13170	13170					-0.15179757805208283
HEALHQFSL	9	Unmodified	_HEALHQFSL_					0	0	0			REV__ENST00000477923.1_1_10:135093272-135094982:-|nuORF	REV__ENST00000477923.1_1_10:135093272-135094982:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	361.1857604980469	3	361.185691	1080.53524	-0.25323	-9.1465E-05	0.046747	1.6884E-05	-0.20649	-7.458E-05	361.18571478283667	32.375	0.62494	32.145	31.942	32.567	-0.23009					17	11	2	0	0	0	0.58135	1	11967	11967		12.241	4.0851	1	17452000	+		13722	15926	8223	8268	13171	13171					-0.001803118423140404
HEAQEEAYR	9	Unmodified	_HEAQEEAYR_					0	0	0		SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant;SPEF2|p.I1348Nfs*12|1|0.34|ENSG00000152582|chr5:35773981-35773982|-/A|frameshift_variant;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;SPEF2|p.N1040Tfs*10|1|0.32|ENSG00000152582|chr5:35739972-35739972|A/-|frameshift_variant;nc|ENSG00000152582|Q9C093-3|SPEF2	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	566.755126953125	2	566.754527	1131.4945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.192	1	25.83	25.33	26.33	-0.36164								0	0	0	0.71946	1	9465	9465		18.146	5.1039	1				13723	4157	8224	8269	13172	13172					-0.06598697952586008
HEAQHFRDA	9	Unmodified	_HEAQHFRDA_					0	0	0		RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	555.7127685546875	2	555.757404	1109.50025	0.31903	0.0001773	-0.21626	-0.00012019	0.10277	5.7114E-05	555.7570763263525	16.624	0.26015	16.282	16.152	16.412	-0.34183					7	4	2	0	0	0	0.015397	2	5584	5584;5615		108.26	72.218	1	6584900			13724	2552	8225	8270	13173;13174	13173					-0.05011554650218386
HEAQHYNTY	9	Unmodified	_HEAQHYNTY_					0	0	0		ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	582.2516479492188	2	581.749244	1161.48394	0.42029	0.0002445	0.32441	0.00018873	0.7447	0.00043323	581.7493742653621	19.157	0.20814	19.157	19.027	19.235	0					6	3	2	0	0	0	4.4167E-08	2	6636	6597;6636		225.01	150.59	1	8897500			13725	6012	8226	8271	13175;13176	13176					-0.09034680606987422
HEAQHYNTY	9	Unmodified	_HEAQHYNTY_					0	0	0		ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant;ZNF292|p.L1721*|1|0.22|ENSG00000188994|chr6:87258790-87258790|T/-|frameshift_variant;ZNF292|p.S2064Lfs*9|1|0.05|ENSG00000188994|chr6:87259817-87259818|-/ATTACTGTGGGTA|frameshift_variant;ZNF292|p.L2169Efs*9|1|0.45|ENSG00000188994|chr6:87260133-87260134|TT/-|frameshift_variant;ZNF292|p.R2545Gfs*14|1|0.18|ENSG00000188994|chr6:87261256-87261256|A/-|frameshift_variant;ZNF292|p.N2626Kfs*10|1|0.07|ENSG00000188994|chr6:87261506-87261509|ATTC/-|frameshift_variant;ENSG00000188994|ENST00000369577|ZNF292;nc|ENSG00000188994|O60281-2|ZNF292	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	ZNF292|p.P1571Qfs*7|1|0.08|ENSG00000188994|chr6:87258335-87258335|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	581.255126953125	2	581.749244	1161.48394	0.4466	0.00025981	-0.36193	-0.00021055	0.084671	4.9257E-05	582.2511227410072	19.855	0.72629	19.48	19.039	19.765	-0.37503					18	13	2	0	0	0	0.0057424	1	6917	6917		132.38	81.525	1	20171000			13726	6012	8226	8271	13177	13177					-0.09034680606987422
HEAVKAGVVGP	11	Unmodified	_HEAVKAGVVGP_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	HCT116MG_D190212_S4	4	532.2971801757812	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.251	1	34.865	34.365	35.365	-0.38606								0	0	0	0.94416	1	12904	12904		9.3831	3.1773	1				13727	5492	8227	8272	13178	13178					0.05340547708851773
HEAVPLSVF	9	Unmodified	_HEAVPLSVF_					0	0	0		nc|ENSG00000141933|Q6ZTW0-2|TPGS1;ENSG00000141933|ENST00000359315|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	MULTI-MSMS	HCT116MG_D190212_S2	2	499.7688903808594	2	499.768917	997.523281	0.39223	0.00019602	-0.21694	-0.00010842	0.17528	8.76E-05	499.76865489723554	51.374	0.36015	51.195	51.018	51.378	-0.17868					17	6	4	0	0	0	0.035914	1	19758	19758		81.613	43.462	1	60092000			13728	3737	8228	8273	13179	13179					0.024420714145321654
HEAVPLSVF	9	Unmodified	_HEAVPLSVF_					0	0	0		nc|ENSG00000141933|Q6ZTW0-2|TPGS1;ENSG00000141933|ENST00000359315|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	499.768917	997.523281	0.24252	0.0001212	0.030372	1.5179E-05	0.27289	0.00013638	499.76867064235756	51.268	0.2575	51.268	51.091	51.349	0	-0.004141	0.00017402	NaN	81.613	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9118200			13729	3737	8228	8273							0.024420714145321654
HEAVPLSVF	9	Unmodified	_HEAVPLSVF_					0	0	0		nc|ENSG00000141933|Q6ZTW0-2|TPGS1;ENSG00000141933|ENST00000359315|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	499.768917	997.523281	0.41731	0.00020856	0.75802	0.00037883	1.1753	0.00058739	499.76921609442815	51.664	0.31408	51.353	51.225	51.539	-0.31166	0.080804	0.00090133	NaN	81.613	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1826700			13730	3737	8228	8273							0.024420714145321654
HECRCRDGY	9	Unmodified	_HECRCRDGY_					0	0	0			REV__nc|ENSG00000238222|Q13434|MKRN4P	REV__nc|ENSG00000238222|Q13434|MKRN4P	MULTI-MSMS	HCT116MG_D190212_S2	2	569.7293701171875	2	569.729474	1137.4444	0.29399	0.0001675	-1.1373	-0.00064794	-0.84329	-0.00048045	569.7289868443711	15.789	0.3655	15.454	15.324	15.689	-0.33451					16	6	4	0	0	0	0.53593	1	5275	5275		14.838	1.2234	1	20127000	+		13731	17306	8229	8274	13180	13180					-0.11882847153719922
HECRCRDGY	9	Unmodified	_HECRCRDGY_					0	0	0			REV__nc|ENSG00000238222|Q13434|MKRN4P	REV__nc|ENSG00000238222|Q13434|MKRN4P	MULTI-MATCH	HCT116MG_D190212_S1	1		2	569.729474	1137.4444	0.35364	0.00020148	-1.0765	-0.00061329	-0.72283	-0.00041182	569.729069761868	15.666	0.20812	15.666	15.536	15.744	0	0.10582	4.6726E-05	NaN	14.838	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2571000	+		13732	17306	8229	8274							-0.11882847153719922
HEEMNYITA	9	Unmodified	_HEEMNYITA_					0	0	0		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;ENST00000526755.5_1_8:42911676-42932640:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	554.2427368164062	2	554.242406	1106.47026	0.26172	0.00014506	0.19206	0.00010645	0.45377	0.0002515	554.2425878083077	34.867	0.26027	34.57	34.44	34.7	-0.29707					7	4	2	0	0	0	0.027442	1	12863	12863		88.954	52.448	1	8081400			13733	5017	8230	8275	13181	13181					-0.07871674430452913
HEEMNYITA	9	Unmodified	_HEEMNYITA_					0	0	0		ENST00000524546.5_1_8:42911603-42924800:+|nuORF;ENST00000526755.5_1_8:42911676-42932640:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	ENST00000524546.5_1_8:42911603-42924800:+|nuORF	MSMS	HCT116MG_D190212_S4	4	554.2422485351562	2	554.242406	1106.47026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.021	1	34.635	34.135	35.135	-0.38606								0	0	0	0.14112	1	12810	12810		51.63	27.609	1				13734	5017	8230	8275	13182	13182					-0.07871674430452913
HEENEIPSC	9	Carbamidomethyl (C)	_HEENEIPSC(Carbamidomethyl (C))_	HEENEIPSC(1)		HEENEIPSC(52)		0	1	0		TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant;ENSG00000149256|ENST00000278550|TENM4	TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7275390625	2	557.72712	1113.43969	0.35888	0.00020016	0.91458	0.00051009	1.2735	0.00071025	557.7274730054855	19.304	0.26057	18.934	18.784	19.044	-0.3695					7	4	2	0	0	0	0.12994	1	6700	6700		52.268	8.4101	1	14935000			13735	18264	8231	8276	13183	13183	68				-0.11249452815491168
HEENYIWI	8	Unmodified	_HEENYIWI_					0	0	0			REV__ENST00000426714.1_1_1:66041898-66042324:-|nuORF	REV__ENST00000426714.1_1_1:66041898-66042324:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	554.4827270507812	2	552.261456	1102.50836	0.35055	0.00019359	0.14165	7.8229E-05	0.4922	0.00027182	552.2614685622173	51.427	0.5138	51.249	51.018	51.532	-0.17869					31	9	5	0	0	0	0.6854	1	19727	19727		24.674	1.5255	1	340650000	+		13736	13599	8232	8277	13184	13184					-0.03879420453495186
HEEYGSRGK	9	Unmodified	_HEEYGSRGK_					0	0	0		ENST00000591137.1_1_17:42872396-42875020:-|nuORF	ENST00000591137.1_1_17:42872396-42875020:-|nuORF	ENST00000591137.1_1_17:42872396-42875020:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	355.0697937011719	3	354.83695	1061.48902	-0.22139	-7.8559E-05	0.11862	4.2091E-05	-0.10278	-3.6468E-05	354.8369132272372	16.154	0.20902	15.82	15.689	15.898	-0.33451					5	3	2	0	0	0	0.71345	1	5440	5440		2.4985	0	1	5732000			13737	9032	8233	8278	13185	13185					-0.039263767443799225
HEFELYEV	8	Unmodified	_HEFELYEV_					0	0	0		ENSG00000178538|ENST00000317995|CA8;ENST00000529918.1_1_8:61178441-61193874:-|nuORF	ENSG00000178538|ENST00000317995|CA8	ENSG00000178538|ENST00000317995|CA8	MSMS	HCT116MG_D190212_S2	2	533.2481079101562	2	533.248015	1064.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.58	1	46.469	45.969	46.969	-0.11121								0	0	0	0.8396	1	17746	17746		19.439	4.8573	1				13738	5505	8234	8279	13186	13186					-0.0481852906466429
HEFGAITF	8	Unmodified	_HEFGAITF_					0	0	0		ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	461.2268981933594	2	461.226885	920.439217	0.02612	1.2047E-05	-0.73112	-0.00033721	-0.705	-0.00032516	461.2264870981106	49.776	0.30974	49.776	49.595	49.905	0					8	5	2	0	0	0	0.10511	1	18978	18978		93.883	53.435	1	25381000			13739	91	8235	8280	13187	13187					-0.02418459682394314
HEFGAITF	8	Unmodified	_HEFGAITF_					0	0	0		ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	461.2264709472656	2	461.226885	920.439217	-0.1902	-8.7726E-05	-0.25263	-0.00011652	-0.44283	-0.00020425	461.22669242226345	49.879	0.30663	49.716	49.585	49.891	-0.16369					13	5	3	0	0	0	0.10511	1	19123	19123		93.883	53.435	1	81008000			13740	91	8235	8280	13188	13188					-0.02418459682394314
HEFGAITF	8	Unmodified	_HEFGAITF_					0	0	0		ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	921.4456787109375	1	921.446494	920.439217	0.47198	0.00043491	-0.87974	-0.00081063	-0.40775	-0.00037572	921.4455829938944	49.927	0.25554	49.763	49.636	49.891	-0.16369					6	4	2	0	0	0	0.057785	1	19135	19135		114.94	51.381	1	29974000			13741	91	8235	8280	13189	13189					-0.02418459682394314
HEFGAITF	8	Unmodified	_HEFGAITF_					0	0	0		ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	461.2269287109375	2	461.226885	920.439217	0.31769	0.00014653	-0.028534	-1.3161E-05	0.28915	0.00013337	461.226838363609	50.09	0.26004	49.774	49.654	49.914	-0.31524					8	4	2	0	0	0	0.15838	2	18899	18864;18899		81.864	41.415	1	12387000			13742	91	8235	8280	13190;13191	13191					-0.02418459682394314
HEFGAITF	8	Unmodified	_HEFGAITF_					0	0	0		ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant;ENSG00000023330|ENST00000484952|ALAS1	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	ALAS1|p.N540Tfs*8|1|0.15|ENSG00000023330|chr3:52212273-52212273|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	461.2265625	2	461.226885	920.439217	-0.020836	-9.61E-06	-0.23946	-0.00011045	-0.2603	-0.00012006	461.22673571696384	50.126	0.26006	49.767	49.689	49.949	-0.35878					5	4	2	0	0	0	0.10511	1	18645	18645		93.883	53.435	1	3472900			13743	91	8235	8280	13192	13192					-0.02418459682394314
HEFKFMEQ	8	Unmodified	_HEFKFMEQ_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-SECPEP	HCT116MG_D190212_S1	1	548.2608032226562	2	548.250034	1094.48552	0.4846	0.00026568	-0.51601	-0.0002829	-0.031415	-1.7223E-05	548.2496345652545	36.314	0.26726	36.314	36.15	36.417	0					8	4	3	0	0	0	0.29935	1	13549	13549		22.736	4.5899	1	4882700			13744	803	8236	8281	13193	13193					-0.0579476284260636
HEFKFMEQ	8	Unmodified	_HEFKFMEQ_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-MSMS	HCT116MG_D190212_S3	3	548.2506713867188	2	548.250034	1094.48552	0.24593	0.00013483	0.45016	0.0002468	0.69609	0.00038163	548.2503695624669	36.524	0.1564	36.223	36.145	36.301	-0.30113					4	2	2	0	0	0	0.68265	1	13528	13528		24.991	10.153	1	4719000			13745	803	8236	8281	13194	13194					-0.0579476284260636
HEFKSNEL	8	Unmodified	_HEFKSNEL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.F397Lfs*5|1|0.27|ENSG00000124207|chr20:49075371-49075371|T/-|frameshift_variant;CSE1L|p.E172K|1|0.15|ENSG00000124207|chr20:49067227-49067227|G/A|missense_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S1	1	502.24566650390625	2	502.245806	1002.47706	0.36437	0.000183	0.14909	7.4878E-05	0.51345	0.00025788	502.24581577769334	24.909	0.41917	24.909	24.778	25.197	0					15	7	3	0	0	0	0.012121	1	8942	8942		160.52	96.28	1	46516000			13746	2835	8237	8282	13195	13195					-0.024079934875658182
HEFKSNEL	8	Unmodified	_HEFKSNEL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.F397Lfs*5|1|0.27|ENSG00000124207|chr20:49075371-49075371|T/-|frameshift_variant;CSE1L|p.E172K|1|0.15|ENSG00000124207|chr20:49067227-49067227|G/A|missense_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	HCT116MG_D190212_S2	2	502.7666320800781	2	502.245806	1002.47706	0.38551	0.00019362	0.16131	8.1018E-05	0.54682	0.00027464	502.2457799940489	25.478	0.41663	25.109	24.926	25.343	-0.36914					23	7	5	0	0	0	0.2797	1	9157	9157		28.487	21.764	1	174480000			13747	2835	8237	8282	13196	13196					-0.024079934875658182
HEFKSNEL	8	Unmodified	_HEFKSNEL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.F397Lfs*5|1|0.27|ENSG00000124207|chr20:49075371-49075371|T/-|frameshift_variant;CSE1L|p.E172K|1|0.15|ENSG00000124207|chr20:49067227-49067227|G/A|missense_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S3	3	502.2496337890625	2	502.245806	1002.47706	0.49796	0.0002501	2.1804	0.0010951	2.6784	0.0013452	502.2471839011218	24.971	0.62487	24.865	24.371	24.995	-0.10618					14	11	2	0	0	0	0.047269	1	8909	8909		126.57	66.176	1	11251000			13748	2835	8237	8282	13197	13197					-0.024079934875658182
HEFQGRAV	8	Unmodified	_HEFQGRAV_					0	0	0			REV__ENST00000377710.9_1_20:17971363-17971543:+|nuORF	REV__ENST00000377710.9_1_20:17971363-17971543:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	472.2409973144531	2	472.240858	942.467164	0.17844	8.4268E-05	0.21787	0.00010289	0.39631	0.00018715	472.24082732471186	26.775	0.26134	26.422	26.293	26.554	-0.35254					7	4	2	0	0	0	0.53394	1	9733	9733		38.151	9.6643	1	19362000	+		13749	15239	8238	8283	13198	13198					-0.006371367022893537
HEFTVYRM	8	Unmodified	_HEFTVYRM_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7581176757812	2	541.758027	1081.5015	0.44365	0.00024035	-1.0676	-0.00057839	-0.62398	-0.00033805	541.7571176437395	36.992	0.26013	36.691	36.509	36.769	-0.30113					7	4	2	0	0	0	0.30543	1	13717	13717		58.679	24.576	1	5171400			13750	2917	8239	8284	13199	13199					-0.03599056605685291
HEFTVYRM	8	Unmodified	_HEFTVYRM_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MATCH	HCT116MG_D190212_S2	2		2	541.758027	1081.5015	0.51942	0.0002814	-1.7037	-0.00092302	-1.1843	-0.00064162	541.7566844152117	36.825	0.30989	36.71	36.447	36.757	-0.11478	0.0097031	-0.00061312	NaN	58.679	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7927400			13751	2917	8239	8284							-0.03599056605685291
HEFVAKGH	8	Unmodified	_HEFVAKGH_					0	0	0		MED18|p.R137H|1|0.54|ENSG00000130772|chr1:28334753-28334753|G/A|missense_variant;ENSG00000130772|ENST00000373842|MED18	MED18|p.R137H|1|0.54|ENSG00000130772|chr1:28334753-28334753|G/A|missense_variant	MED18|p.R137H|1|0.54|ENSG00000130772|chr1:28334753-28334753|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	462.73797607421875	2	462.737951	923.46135	0.15276	7.0686E-05	0.023846	1.1035E-05	0.1766	8.172E-05	462.7378700783601	15.822	0.20818	15.822	15.692	15.9	0					7	3	3	0	0	0	0.71077	1	5307	5307		21.747	7.165	1	7013200			13752	3104	8240	8285	13200	13200					-0.0034423521395865464
HEFVAKGH	8	Unmodified	_HEFVAKGH_					0	0	0		MED18|p.R137H|1|0.54|ENSG00000130772|chr1:28334753-28334753|G/A|missense_variant;ENSG00000130772|ENST00000373842|MED18	MED18|p.R137H|1|0.54|ENSG00000130772|chr1:28334753-28334753|G/A|missense_variant	MED18|p.R137H|1|0.54|ENSG00000130772|chr1:28334753-28334753|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	462.73809814453125	2	462.737951	923.46135	0.10916	5.0511E-05	0.26187	0.00012118	0.37103	0.00017169	462.7380402111628	16.154	0.31364	15.82	15.689	16.003	-0.33451					10	5	3	0	0	0	0.079196	1	5442	5442		99.799	55.392	1	8645500			13753	3104	8240	8285	13201	13201					-0.0034423521395865464
HEFVAKGHLF	10	Unmodified	_HEFVAKGHLF_					0	0	0		MED18|p.R137H|1|0.54|ENSG00000130772|chr1:28334753-28334753|G/A|missense_variant;ENSG00000130772|ENST00000373842|MED18	MED18|p.R137H|1|0.54|ENSG00000130772|chr1:28334753-28334753|G/A|missense_variant	MED18|p.R137H|1|0.54|ENSG00000130772|chr1:28334753-28334753|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	395.54541015625	3	395.545219	1183.61383	0.14963	5.9187E-05	0.15885	6.2832E-05	0.30848	0.00012202	395.5452122570854	34.905	0.31058	34.746	34.606	34.916	-0.15834					6	5	2	0	0	0	0.43254	1	13033	13033		39.923	23.357	1	10301000			13754	3104	8241	8286	13202	13202					0.029365404627924363
HEGEILQAF	9	Unmodified	_HEGEILQAF_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S1	1	522.26171875	2	522.261456	1042.50836	0.21211	0.00011078	0.024748	1.2925E-05	0.23686	0.0001237	522.261502143818	48.022	0.25907	48.022	47.893	48.152	0					7	4	2	0	0	0	0.004194	1	18288	18288		147.83	93.058	1	14727000			13755	5494	8242	8287	13203	13203					-0.011194204534831442
HEGEILQAF	9	Unmodified	_HEGEILQAF_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-SECPEP	HCT116MG_D190212_S2	2	521.4838256835938	2	522.261456	1042.50836	0.62028	0.00032395	-0.24734	-0.00012918	0.37294	0.00019477	522.2613023704548	48.119	0.30393	47.986	47.841	48.145	-0.13282					6	5	2	0	0	0	0.2458	1	18373	18373		18.146	10.857	1	48054000			13756	5494	8242	8287	13204	13204					-0.011194204534831442
HEGFHFPYDY	10	Unmodified	_HEGFHFPYDY_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	MSMS	HCT116MG_D190212_S2	2	437.8532409667969	3	437.852489	1310.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.66	1	30.393	29.893	30.893	-0.26704								0	0	0	0.90475	1	11281	11281		8.9762	0	1				13757	6197	8243	8288	13205	13205					-0.10720936913094192
HEGHVYGF	8	Unmodified	_HEGHVYGF_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MSMS	HCT116MG_D190212_S2	2	473.2140808105469	2	473.214309	944.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.176	1	31.946	31.446	32.446	-0.23009								0	0	0	0.87079	1	11896	11896		16.942	7.5949	1				13758	5588	8244	8289	13206	13206					-0.060365144849583885
HEGLSRGAP	9	Unmodified	_HEGLSRGAP_					0	0	0			REV__LCP2|p.T454Nfs*15|1|0.35|ENSG00000043462|chr5:170250848-170250849|-/T|frameshift_variant	REV__LCP2|p.T454Nfs*15|1|0.35|ENSG00000043462|chr5:170250848-170250849|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	462.1466369628906	2	462.238316	922.462078	0.073059	3.377E-05	-3.2289	-0.0014925	-3.1558	-0.0014587	462.2367974842974	27.901	0.30211	27.58	27.304	27.606	-0.32157					6	5	2	0	0	0	0.20553	1	9990	9990		16.942	3.4344	1	3671200	+		13759	10596	8245	8290	13207	13207					-0.002254405649068758
HEGPALYY	8	Unmodified	_HEGPALYY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S1	1	475.2230529785156	2	475.224342	948.434132	-0.013682	-6.5018E-06	-0.53675	-0.00025508	-0.55044	-0.00026158	475.2238331853704	37.872	0.26009	37.872	37.707	37.968	0					10	4	3	0	0	0	0.23352	1	14164	14164		67.035	32.848	1	11304000			13760	2925	8246	8291	13208	13208					-0.04214763545007827
HEGPALYY	8	Unmodified	_HEGPALYY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	475.22430419921875	2	475.224342	948.434132	0.014237	6.7657E-06	-0.167	-7.9363E-05	-0.15276	-7.2597E-05	475.2241420486444	37.935	0.3613	37.842	37.702	38.063	-0.093006					11	6	3	0	0	0	0.1757	1	14241	14241		78.445	44.257	1	35690000			13761	2925	8246	8291	13209	13209					-0.04214763545007827
HEGPALYY	8	Unmodified	_HEGPALYY_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	949.4406127929688	1	949.441409	948.434132	0.42906	0.00040737	-0.19926	-0.00018919	0.2298	0.00021818	949.4405996136919	37.924	0.25766	37.831	37.702	37.96	-0.09301					6	4	2	0	0	0	0.083541	1	14265	14265		98.807	55.839	1	17137000			13762	2925	8246	8291	13210	13210					-0.04214763545007827
HEGPVWQV	8	Unmodified	_HEGPVWQV_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13;SEC13|p.H114Mfs*5|1|0.4|ENSG00000157020|chr3:10312075-10312075|G/-|frameshift_variant	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	476.23773193359375	2	476.237784	950.461016	0.13052	6.2159E-05	0.080659	3.8413E-05	0.21118	0.00010057	476.23786852260156	43.342	0.26026	43.342	43.16	43.42	0					7	4	2	0	0	0	0.23195	1	16379	16379		67.344	29.193	1	10875000			13763	4309	8247	8292	13211	13211					-0.01619654933813308
HEGPVWQV	8	Unmodified	_HEGPVWQV_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13;SEC13|p.H114Mfs*5|1|0.4|ENSG00000157020|chr3:10312075-10312075|G/-|frameshift_variant	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	476.2379150390625	2	476.237784	950.461016	-0.071963	-3.4271E-05	0.37118	0.00017677	0.29922	0.0001425	476.23798744406014	43.111	0.35976	43.038	42.84	43.2	-0.073376					11	6	2	0	0	0	0.23195	1	16336	16336		67.344	20.423	1	25331000			13764	4309	8247	8292	13212	13212					-0.01619654933813308
HEHDFRVKH	9	Unmodified	_HEHDFRVKH_					0	0	0		nc|ENSG00000182473|Q9UPT5-5|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	MSMS	HCT116MG_D190212_S2	2	602.8019409179688	2	602.802146	1203.58974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.986	1	15.652	15.152	16.152	-0.33451								0	0	0	0.76739	1	5350	5350		10.074	0.6908	1				13765	9574	8248	8293	13213	13213					-0.003912999708745701
HEHFVTSL	8	Unmodified	_HEHFVTSL_					0	0	0		ENSG00000007168|ENST00000397195|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	MULTI-MSMS	HCT116MG_D190212_S1	1	485.242919921875	2	485.243067	968.47158	0.24663	0.00011968	0.030641	1.4868E-05	0.27727	0.00013454	485.2428891637483	34.05	0.26114	34.05	33.867	34.128	0					7	4	2	0	0	0	0.070772	1	12648	12648		101.72	38.159	1	8926900			13766	839	8249	8294	13214	13214					-0.013916722793851477
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S1	1	538.24072265625	2	538.240532	1074.46651	0.55289	0.00029759	-0.27039	-0.00014553	0.2825	0.00015206	538.2404525468329	16.965	0.20877	16.965	16.837	17.046	0					7	3	3	0	0	0	0.0096585	1	5750	5750		114.19	60.782	1	8512100			13767	6078	8250	8295	13215	13215					-0.06774299413655172
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S1	1	359.1626281738281	3	359.16278	1074.46651	0.0059729	2.1452E-06	-0.61977	-0.0002226	-0.6138	-0.00022045	359.16265523288695	16.968	0.20877	16.968	16.837	17.046	0					8	3	3	0	0	0	0.69329	1	5768	5768		3.5871	0.59182	1	7259200			13768	6078	8250	8295	13216	13216					-0.06774299413655172
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S2	2	538.2484741210938	2	538.240532	1074.46651	0.46516	0.00025037	-0.67262	-0.00036203	-0.20746	-0.00011166	538.2402176395442	17.719	0.31324	17.362	17.18	17.493	-0.35647					12	5	3	0	0	0	0.01386	1	6016	6016		103.82	71.038	1	51177000			13769	6078	8250	8295	13217	13217					-0.06774299413655172
HEHGQLHSM	9	Unmodified	_HEHGQLHSM_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S2	2	359.16265869140625	3	359.16278	1074.46651	-0.17922	-6.437E-05	-0.18691	-6.7133E-05	-0.36614	-0.0001315	359.1627800357118	17.719	0.31339	17.362	17.232	17.545	-0.35647					10	5	3	0	0	0	0.0201	1	6054	6054		79.427	61.054	1	22528000			13770	6078	8250	8295	13218	13218					-0.06774299413655172
HEHHHLQAP	9	Unmodified	_HEHHHLQAP_					0	0	0		C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant;ENSG00000171155|ENST00000304661|C1GALT1C1	C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant	C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	553.268310546875	2	553.267939	1104.52132	0.35509	0.00019646	0.62772	0.0003473	0.9828	0.00054375	553.2679533329459	17.353	0.31333	17.004	16.769	17.082	-0.34933					12	5	3	0	0	0	0.00446	1	5912	5912		174.73	129.03	1	12970000			13771	289	8251	8296	13219	13219					-0.02675544550743325
HEHHHLQAP	9	Unmodified	_HEHHHLQAP_					0	0	0		C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant;ENSG00000171155|ENST00000304661|C1GALT1C1	C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant	C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	369.18096923828125	3	369.181051	1104.52132	-0.20679	-7.6342E-05	0.36531	0.00013487	0.15852	5.8523E-05	369.1812380205375	17.353	0.31333	17.004	16.769	17.082	-0.34933					7	5	2	0	0	0	0.26031	1	5929	5929		34.932	28.209	1	5457300			13772	289	8251	8296	13220	13220					-0.02675544550743325
HEHHHLQAP	9	Unmodified	_HEHHHLQAP_					0	0	0		C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant;ENSG00000171155|ENST00000304661|C1GALT1C1	C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant	C1GALT1C1|p.D162Gfs*18|1|0.57|ENSG00000171155|chrX:120626684-120626685|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	369.1806335449219	3	369.181051	1104.52132	-0.064415	-2.3781E-05	-0.65294	-0.00024105	-0.71736	-0.00026483	369.1807391588428	15.189	0.36386	15.272	15.09	15.454	0.083271					9	6	2	0	0	0	0.29516	1	4975	4975		31.268	26.371	1	1339800			13773	289	8251	8296	13221	13221					-0.02675544550743325
HEHHIFLGA	9	Unmodified	_HEHHIFLGA_					0	0	0		nc|ENSG00000105976|P08581-3|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-3|MET	MULTI-MSMS	HCT116MG_D190212_S2	2	530.7701416015625	2	530.769783	1059.52501	0.60565	0.00032146	-0.18444	-9.7893E-05	0.42121	0.00022357	530.7697586573884	31.939	0.25817	31.709	31.58	31.838	-0.23009					8	4	2	0	0	0	0.0034497	1	11812	11812		161.89	129.59	1	29605000			13774	2050	8252	8297	13222	13222					-0.0023687477687417413
HEHHIFLGA	9	Unmodified	_HEHHIFLGA_					0	0	0		nc|ENSG00000105976|P08581-3|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-3|MET	MULTI-SECPEP	HCT116MG_D190212_S2	2	354.2746887207031	3	354.182281	1059.52501	0.028271	1.0013E-05	-0.64438	-0.00022823	-0.61611	-0.00021821	354.1820976797754	31.966	0.20628	31.736	31.58	31.787	-0.23009					6	3	2	0	0	0	0.24622	1	11810	11810		7.609	0	1	7982400			13775	2050	8252	8297	13223	13223					-0.0023687477687417413
HEHHTTIVA	9	Unmodified	_HEHHTTIVA_					0	0	0		nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF	nc|ENSG00000179335|P49761-3|CLK3	nc|ENSG00000179335|P49761-3|CLK3	MULTI-MSMS	HCT116MG_D190212_S2	2	522.7647705078125	2	522.764697	1043.51484	0.36367	0.00019011	0.074772	3.9088E-05	0.43844	0.0002292	522.764601451867	19.544	0.36399	19.174	18.992	19.356	-0.3695					18	6	4	0	0	0	0.007119	1	6785	6785		120.45	91.964	1	91865000			13776	5550	8253	8298	13224	13224					-0.005174825021185825
HEHKPPDP	8	Unmodified	_HEHKPPDP_					0	0	0			REV__ENSG00000149792|ENST00000279242|MRPL49	REV__ENSG00000149792|ENST00000279242|MRPL49	MULTI-MSMS	HCT116MG_D190212_S3	3	478.7322998046875	2	478.732866	955.451179	0.16154	7.7334E-05	-3.2029	-0.0015333	-3.0413	-0.001456	478.73135135444306	22.588	0.36468	22.569	22.283	22.647	-0.018869					8	6	2	0	0	0	0.69862	1	7957	7957		23.148	0	1	4585700	+		13777	12574	8254	8299	13225	13225					-0.02832842939199054
HEHKPPDP	8	Unmodified	_HEHKPPDP_					0	0	0			REV__ENSG00000149792|ENST00000279242|MRPL49	REV__ENSG00000149792|ENST00000279242|MRPL49	MSMS	HCT116MG_D190212_S4	4	478.7317199707031	2	478.732866	955.451179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.108	1	22.87	22.37	23.37	-0.23758								0	0	0	0.87079	1	8074	8074		16.942	0	1		+		13778	12574	8254	8299	13226	13226					-0.02832842939199054
HEHQVMLM	8	Unmodified	_HEHQVMLM_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;ENST00000473525.1_1_X:70516758-70517827:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7389526367188	2	512.73878	1023.46301	0.38923	0.00019957	0.21075	0.00010806	0.59997	0.00030763	512.7388773765986	34.829	0.31129	34.67	34.502	34.813	-0.15834					9	5	2	0	0	0	0.067369	2	12984	12984;12996		104.8	66.648	1	44930000			13779	3974	8255	8300	13227;13228	13227					-0.047786855118602034
HEHRGHDGPG	10	Unmodified	_HEHRGHDGPG_					0	0	0		ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	MULTI-MSMS	HCT116MG_D190212_S2	2	549.7448120117188	2	549.744828	1097.4751	0.40193	0.00022096	0.53329	0.00029317	0.93522	0.00051413	549.7450203913147	19.288	0.26057	18.918	18.784	19.044	-0.3695					9	4	3	0	0	0	0.58749	1	6695	6695		29.082	29.082	1	35338000			13780	6341	8256	8301	13229	13229					-0.06973609452825258
HEHRGHDGPG	10	Unmodified	_HEHRGHDGPG_					0	0	0		ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	549.744828	1097.4751	0.40193	0.00022096	0.53329	0.00029317	0.93522	0.00051413	549.7450203913147	19.288	0.26057	18.918	18.784	19.044	-0.3695	0.11493	0.00022613	NaN	29.082	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35338000			13781	6341	8256	8301							-0.06973609452825258
HEHRLPHVL	9	Unmodified	_HEHRLPHVL_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S2	2	379.8806457519531	3	379.880713	1136.62031	0.024885	9.4533E-06	0.32995	0.00012534	0.35484	0.0001348	379.8807487497829	27.197	0.31353	26.845	26.713	27.026	-0.35254					11	5	3	0	0	0	0.16306	1	9896	9896		35.612	14.022	1	41066000			13782	4899	8257	8302	13230	13230					0.05746478414152989
HEHRLPHVL	9	Unmodified	_HEHRLPHVL_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S2	2	569.3175048828125	2	569.317432	1136.62031	0.59653	0.00033961	0.087292	4.9697E-05	0.68382	0.00038931	569.3173939321771	27.249	0.26188	26.897	26.713	26.975	-0.35254					10	4	3	0	0	0	0.082877	1	9900	9900		61.602	33.973	1	25969000			13783	4899	8257	8302	13231	13231					0.05746478414152989
HEHRLPHVL	9	Unmodified	_HEHRLPHVL_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MATCH	HCT116MG_D190212_S1	1		3	379.880713	1136.62031	-0.12203	-4.6357E-05	-0.045751	-1.738E-05	-0.16778	-6.3737E-05	379.88054450703805	26.659	0.20823	26.659	26.553	26.761	0	-0.092794	-0.00037514	NaN	35.612	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2497400			13784	4899	8257	8302							0.05746478414152989
HEHVQFNEF	9	Unmodified	_HEHVQFNEF_					0	0	0		ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	MULTI-MSMS	HCT116MG_D190212_S1	1	593.76806640625	2	593.767437	1185.52032	0.50584	0.00030035	-0.7823	-0.00046451	-0.27646	-0.00016415	593.7676772900168	36.937	0.1554	36.937	36.835	36.99	0					4	2	2	0	0	0	0.29516	1	13805	13805		31.268	14.155	1	6397700			13785	3328	8258	8303	13232	13232					-0.06501803710284548
HEHVQFNEF	9	Unmodified	_HEHVQFNEF_					0	0	0		ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	MULTI-SECPEP	HCT116MG_D190212_S2	2	593.2883911132812	2	593.767437	1185.52032	0.60746	0.00036069	0.25461	0.00015118	0.86208	0.00051187	593.7675896815105	36.948	0.25756	36.833	36.705	36.963	-0.11478					7	4	2	0	0	0	0.18296	1	13852	13852		32.786	20.545	1	24076000			13786	3328	8258	8303	13233	13233					-0.06501803710284548
HEIAVNENF	9	Unmodified	_HEIAVNENF_					0	0	0		nc|ENSG00000166046|Q8N4U5-2|TCP11L2;ENSG00000166046|ENST00000299045|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	MULTI-SECPEP	HCT116MG_D190212_S1	1	536.73486328125	2	536.756538	1071.49852	0.55642	0.00029866	-0.61795	-0.00033169	-0.061522	-3.3022E-05	536.7563191839531	35.811	0.26004	35.811	35.682	35.942	0					7	4	2	0	0	0	0.15759	1	13338	13338		39.95	25.111	1	14669000			13787	4817	8259	8304	13234	13234					-0.03436608458855517
HEIAVNENF	9	Unmodified	_HEIAVNENF_					0	0	0		nc|ENSG00000166046|Q8N4U5-2|TCP11L2;ENSG00000166046|ENST00000299045|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	MULTI-MSMS	HCT116MG_D190212_S2	2	536.7566528320312	2	536.756538	1071.49852	0.82309	0.0004418	-0.42252	-0.00022679	0.40057	0.00021501	536.7561680825686	35.863	0.30854	35.735	35.555	35.864	-0.12799					12	5	3	0	0	0	0.055677	1	13398	13398		71.922	37.521	1	50309000			13788	4817	8259	8304	13235	13235					-0.03436608458855517
HEIEGTVF	8	Unmodified	_HEIEGTVF_					0	0	0		nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;ENST00000487020.5_1_7:24844051-24854692:-|nuORF	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-MSMS	HCT116MG_D190212_S2	2	466.2296447753906	2	466.229625	930.444697	0.023508	1.096E-05	-0.53965	-0.0002516	-0.51614	-0.00024064	466.2293215098107	39.724	0.36036	39.646	39.477	39.837	-0.077839					11	6	2	0	0	0	0.13911	1	14982	14982		86.121	45.673	1	21954000			13789	1246	8260	8305	13236	13236					-0.023307808905656202
HEIEGTVF	8	Unmodified	_HEIEGTVF_					0	0	0		nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;ENST00000487020.5_1_7:24844051-24854692:-|nuORF	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-MSMS	HCT116MG_D190212_S3	3	466.2293395996094	2	466.229625	930.444697	0.1331	6.2055E-05	-0.83773	-0.00039057	-0.70463	-0.00032852	466.2293670231619	40.051	0.18488	39.75	39.666	39.851	-0.30137					6	3	2	0	0	0	0.13911	1	14881	14881		86.121	45.673	1	3684500			13790	1246	8260	8305	13237	13237					-0.023307808905656202
HEIEVETI	8	Unmodified	_HEIEVETI_					0	0	0		YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;ENSG00000100811|ENST00000262238|YY1	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	485.2480163574219	2	485.248015	968.481476	0.6627	0.00032158	-0.065672	-3.1867E-05	0.59703	0.00028971	485.24787302608354	37.525	0.31268	37.525	37.395	37.707	0					10	5	3	0	0	0	0.057785	1	14047	14047		114.94	0	1	26922000			13791	1732	8261	8306	13238	13238					-0.004025290646723079
HEIEVETI	8	Unmodified	_HEIEVETI_					0	0	0		YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;ENSG00000100811|ENST00000262238|YY1	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	485.7877502441406	2	485.248015	968.481476	-0.022102	-1.0725E-05	0.41735	0.00020252	0.39525	0.00019179	485.2481749163876	37.615	0.20369	37.512	37.385	37.589	-0.10318					6	3	2	0	0	0	0.21611	1	14067	14067		50.855	6.448	1	88029000			13792	1732	8261	8306	13239	13239					-0.004025290646723079
HEIGEFPVF	9	Unmodified	_HEIGEFPVF_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-SECPEP	HCT116MG_D190212_S1	1	538.3021850585938	2	537.766374	1073.5182	0.5536	0.00029771	0.057805	3.1086E-05	0.61141	0.00032879	537.7663529848469	54.815	0.20339	54.815	54.688	54.892	0					5	3	2	0	0	0	0.048195	1	21015	21015		74.423	52.676	1	22128000			13793	2215	8262	8307	13240	13240					-0.01562232448100076
HEIGEFPVF	9	Unmodified	_HEIGEFPVF_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-SECPEP	HCT116MG_D190212_S2	2	537.8010864257812	2	537.766374	1073.5182	0.46181	0.00024834	0.0075472	4.0587E-06	0.46935	0.0002524	537.7662305063085	54.979	0.25521	54.791	54.662	54.918	-0.18797					9	4	3	0	0	0	0.028818	1	21181	21181		97.075	68.588	1	97389000			13794	2215	8262	8307	13241	13241					-0.01562232448100076
HEIGHGIAA	9	Unmodified	_HEIGHGIAA_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	HCT116MG_D190212_S1	1	452.73541259765625	2	452.735409	903.456264	0.091901	4.1607E-05	-0.16884	-7.6438E-05	-0.076935	-3.4831E-05	452.7352892091427	22.35	0.36549	22.35	22.063	22.428	0					8	6	2	0	0	0	0.035914	1	7913	7913		81.613	39.519	1	5165300			13795	905	8263	8308	13242	13242					0.0006746092341245458
HEIGHGIAA	9	Unmodified	_HEIGHGIAA_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	HCT116MG_D190212_S2	2	452.7356872558594	2	452.735409	903.456264	0.07863	3.5599E-05	0.31765	0.00014381	0.39628	0.00017941	452.73551273104533	22.929	0.31198	22.544	22.414	22.726	-0.3852					15	5	4	0	0	0	0.0034366	1	8154	8154		179.23	125.65	1	49908000			13796	905	8263	8308	13243	13243					0.0006746092341245458
HEIGHGIAA	9	Unmodified	_HEIGHGIAA_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	HCT116MG_D190212_S3	3	452.7354431152344	2	452.735409	903.456264	0.14992	6.7873E-05	0.14378	6.5096E-05	0.2937	0.00013297	452.7353763658211	22.171	0.31237	22.172	21.99	22.302	0.00074577					10	5	2	0	0	0	0.0034497	1	7763	7763		161.89	80.03	1	25335000			13797	905	8263	8308	13244	13244					0.0006746092341245458
HEIGHGIAA	9	Unmodified	_HEIGHGIAA_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	HCT116MG_D190212_S4	4	452.7353515625	2	452.735409	903.456264	0.25511	0.0001155	-0.076459	-3.4616E-05	0.17865	8.0883E-05	452.7352776339544	22.506	0.31168	22.277	22.142	22.454	-0.22865					11	5	3	0	0	0	0.0082751	1	7848	7848		117.6	66.744	1	9023400			13798	905	8263	8308	13245	13245					0.0006746092341245458
HEIIIRSH	8	Unmodified	_HEIIIRSH_					0	0	0		ENSG00000185269|ENST00000409678|NOTUM	ENSG00000185269|ENST00000409678|NOTUM	ENSG00000185269|ENST00000409678|NOTUM	MULTI-SECPEP	HCT116MG_D190212_S2	2	503.24554443359375	2	502.785433	1003.55631	0.38771	0.00019493	-0.28044	-0.000141	0.10726	5.3931E-05	502.7853433509488	21.319	0.20627	20.936	20.807	21.013	-0.38288					5	3	2	0	0	0	0.25507	1	7494	7494		30.637	13.694	1	6574900			13799	5815	8264	8309	13246	13246					0.05467698257223219
HEIITIGY	8	Unmodified	_HEIITIGY_					0	0	0		ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;CDS2|p.V116I|1|0.16|ENSG00000101290|chr20:5176702-5176702|G/A|missense_variant;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENSG00000163624|ENST00000295887|CDS1	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	473.2552795410156	2	473.255643	944.496732	0.085917	4.0661E-05	-0.061546	-2.9127E-05	0.02437	1.1533E-05	473.255432946818	44.129	0.20946	44.129	43.986	44.195	0					6	3	2	0	0	0	0.03907	1	16698	16698		136.08	69.045	1	24006000			13800	1773	8265	8310	13247	13247					0.022263825232016643
HEIITIGY	8	Unmodified	_HEIITIGY_					0	0	0		ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;CDS2|p.V116I|1|0.16|ENSG00000101290|chr20:5176702-5176702|G/A|missense_variant;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENSG00000163624|ENST00000295887|CDS1	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	945.5052490234375	1	945.504009	944.496732	0.728	0.00068833	0.13081	0.00012368	0.85881	0.00081201	945.5041396952341	44.15	0.20946	44.15	43.986	44.195	0					6	3	2	0	0	0	0.03907	1	16701	16701		136.08	45.245	1	9778700			13801	1773	8265	8310	13248	13248					0.022263825232016643
HEIITIGY	8	Unmodified	_HEIITIGY_					0	0	0		ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;CDS2|p.V116I|1|0.16|ENSG00000101290|chr20:5176702-5176702|G/A|missense_variant;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENSG00000163624|ENST00000295887|CDS1	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	473.25579833984375	2	473.255643	944.496732	0.03224	1.5258E-05	0.25443	0.00012041	0.28667	0.00013567	473.2557181834122	44.122	0.30769	44.044	43.865	44.173	-0.078373					14	5	3	0	0	0	0.03907	1	16752	16752		136.08	69.045	1	133930000			13802	1773	8265	8310	13249	13249					0.022263825232016643
HEIITIGY	8	Unmodified	_HEIITIGY_					0	0	0		ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;CDS2|p.V116I|1|0.16|ENSG00000101290|chr20:5176702-5176702|G/A|missense_variant;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENSG00000163624|ENST00000295887|CDS1	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	945.5045776367188	1	945.504009	944.496732	0.44674	0.00042239	0.31021	0.00029331	0.75695	0.0007157	945.5043335111933	44.122	0.2565	44.044	43.916	44.173	-0.078373					7	4	2	0	0	0	0.052199	1	16754	16754		120.86	42.412	1	81499000			13803	1773	8265	8310	13250	13250					0.022263825232016643
HEIITIGY	8	Unmodified	_HEIITIGY_					0	0	0		ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;CDS2|p.V116I|1|0.16|ENSG00000101290|chr20:5176702-5176702|G/A|missense_variant;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENSG00000163624|ENST00000295887|CDS1	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	473.255859375	2	473.255643	944.496732	0.42042	0.00019897	0.079731	3.7733E-05	0.50015	0.0002367	473.25565251792256	44.418	0.25922	44.111	43.916	44.175	-0.30759					7	4	2	0	0	0	0.030201	1	16604	16604		144.66	58.536	1	5679600			13804	1773	8265	8310	13251	13251					0.022263825232016643
HEIITLEQY	9	Unmodified	_HEIITLEQY_					0	0	0		PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B	PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant	PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	573.2955932617188	2	573.295496	1144.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.859	1	43.553	43.053	44.053	-0.30616								0	0	0	0.30238	1	16378	16378		39.95	19.496	1				13805	1433	8266	8311	13252	13252					0.00993404406517584
HEIITPEQF	9	Unmodified	_HEIITPEQF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S1	1	557.28271484375	2	557.282389	1112.55022	0.233	0.00012984	0.12877	7.1762E-05	0.36177	0.00020161	557.2824468021511	42.409	0.46395	42.409	42.226	42.69	0					22	8	3	0	0	0	0.016744	1	15982	15982		99.755	3.3887	1	103190000			13806	2741	8267	8312	13253	13253					-0.001548647649542545
HEIITPEQF	9	Unmodified	_HEIITPEQF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S2	2	557.282470703125	2	557.282389	1112.55022	0.47782	0.00026628	-0.14157	-7.8894E-05	0.33625	0.00018739	557.282217059866	42.419	0.82995	42.349	41.911	42.741	-0.069984					46	15	5	0	0	0	0.016744	1	16036	16036		99.755	13.423	1	316300000			13807	2741	8267	8312	13254	13254					-0.001548647649542545
HEIITPEQF	9	Unmodified	_HEIITPEQF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S2	2	1113.5582275390625	1	1113.5575	1112.55022	0.67416	0.00075072	-0.49171	-0.00054755	0.18245	0.00020317	1113.5568851458727	42.508	0.41495	42.438	42.17	42.585	-0.069981					13	7	2	0	0	0	0.0038512	1	16058	16058		152.89	34.818	1	36353000			13808	2741	8267	8312	13255	13255					-0.001548647649542545
HEIITPEQF	9	Unmodified	_HEIITPEQF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S3	3	557.2828369140625	2	557.282389	1112.55022	0.46964	0.00026172	-0.16883	-9.4084E-05	0.30082	0.00016764	557.2821902672131	42.69	0.57261	42.386	42.092	42.664	-0.30352					32	10	4	0	0	0	0.026999	1	15893	15893		89.401	19.069	1	50481000			13809	2741	8267	8312	13256	13256					-0.001548647649542545
HEIITPEQF	9	Unmodified	_HEIITPEQF_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S4	4	557.2822265625	2	557.282389	1112.55022	0.3096	0.00017254	0.28509	0.00015887	0.59469	0.00033141	557.2823871949349	42.892	0.39743	42.517	42.202	42.6	-0.37493					17	7	3	0	0	0	0.041798	1	15713	15713		78.728	23.225	1	9313400			13810	2741	8267	8312	13257	13257					-0.001548647649542545
HEILTKSY	8	Unmodified	_HEILTKSY_					0	0	0		nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	MULTI-MSMS	HCT116MG_D190212_S2	2	495.7671203613281	2	495.766374	989.518196	0.48514	0.00024051	0.050131	2.4853E-05	0.53527	0.00026537	495.7664873911269	25.941	0.20755	25.572	25.446	25.654	-0.36914					8	3	3	0	0	0	0.21681	1	9383	9383		70.332	39.695	1	16309000			13811	4604	8268	8313	13258	13258					0.023017675519099612
HEILVSDF	8	Unmodified	_HEILVSDF_					0	0	0		nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5;POC5|p.E345Sfs*7|1|0.07|ENSG00000152359|chr5:75689109-75689109|T/-|frameshift_variant	nc|ENSG00000152359|Q8NA72-2|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	MULTI-SECPEP	HCT116MG_D190212_S3	3	480.2691650390625	2	480.245275	958.475997	0.33536	0.00016106	0.084609	4.0633E-05	0.41997	0.00020169	480.24527939189153	46.778	0.20856	46.464	46.333	46.542	-0.31405					6	3	2	0	0	0	0.12	1	17557	17557		70.716	32.564	1	4725500			13812	4148	8269	8314	13259	13259					-0.0049020785647826415
HEINFQAF	8	Unmodified	_HEINFQAF_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	HCT116MG_D190212_S2	2	503.2433776855469	2	503.243067	1004.47158	0.67181	0.00033808	0.098011	4.9324E-05	0.76982	0.00038741	503.24319614166603	47.14	0.25876	47.018	46.871	47.13	-0.12175					8	4	2	0	0	0	0.10976	1	17992	17992		92.822	60.517	1	29205000			13813	4728	8270	8315	13260	13260					-0.030476722793878253
HEINFQAF	8	Unmodified	_HEINFQAF_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;INTS1|p.R843Pfs*31|1|0.39|ENSG00000164880|chr7:1487438-1487439|-/G|frameshift_variant	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	503.243067	1004.47158	0.42401	0.00021338	0.2132	0.00010729	0.63721	0.00032067	503.2431437919491	47.088	0.20706	47.088	46.958	47.165	0	0.034848	8.7701E-05	NaN	92.822	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6783000			13814	4728	8270	8315							-0.030476722793878253
HEKDMELSF	9	Unmodified	_HEKDMELSF_					0	0	0		MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant;ENSG00000179455|ENST00000314520|MKRN3;ENST00000568945.2_1_15:23811631-23811987:+|nuORF;nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	568.2578735351562	2	568.258056	1134.50156	0.062202	3.5347E-05	-0.52599	-0.0002989	-0.46379	-0.00026355	568.2576682364985	40.664	0.25477	40.664	40.539	40.794	0					6	4	2	0	0	0	0.39784	1	15327	15327		22.736	0	1	7668700			13815	5559	8271	8316	13261	13261					-0.06031101396365557
HEKDMELSF	9	Unmodified	_HEKDMELSF_					0	0	0		MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant;ENSG00000179455|ENST00000314520|MKRN3;ENST00000568945.2_1_15:23811631-23811987:+|nuORF;nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	568.2582397460938	2	568.258056	1134.50156	0.60391	0.00034318	-0.49024	-0.00027858	0.11367	6.4594E-05	568.2578442071897	40.666	0.25723	40.596	40.468	40.725	-0.069626					7	4	2	0	0	0	0.11363	1	15374	15374		55.503	23.197	1	15220000			13816	5559	8271	8316	13262	13262					-0.06031101396365557
HEKDMELSF	9	Unmodified	_HEKDMELSF_					0	0	0		MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant;ENSG00000179455|ENST00000314520|MKRN3;ENST00000568945.2_1_15:23811631-23811987:+|nuORF;nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	568.258056	1134.50156	0.062202	3.5347E-05	-0.52599	-0.0002989	-0.46379	-0.00026355	568.2576682364985	40.664	0.25477	40.664	40.539	40.794	0	0.03371	-2.8297E-05	NaN	55.503	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7668700			13817	5559	8271	8316							-0.06031101396365557
HEKQDTLVA	9	Unmodified	_HEKQDTLVA_					0	0	0		ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	520.7725830078125	2	520.772188	1039.52982	0.26581	0.00013842	1.0986	0.00057214	1.3644	0.00071056	520.7730901240537	23.294	0.36297	22.908	22.778	23.141	-0.3852					9	6	2	0	0	0	0.26031	1	8321	8321		34.932	9.9411	1	21062000			13818	5434	8272	8317	13263	13263					0.01163964575243881
HEKQDTLVA	9	Unmodified	_HEKQDTLVA_					0	0	0		ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	MSMS	HCT116MG_D190212_S3	3	520.7723388671875	2	520.772188	1039.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.442	1	22.423	21.923	22.923	-0.018869								0	0	0	0.44802	1	7873	7873		31.268	7.2478	1				13819	5434	8272	8317	13264	13264					0.01163964575243881
HEKQDTLVA	9	Unmodified	_HEKQDTLVA_					0	0	0		ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	520.772188	1039.52982	0.39031	0.00020326	-0.82518	-0.00042973	-0.43487	-0.00022647	520.7727176449936	22.663	0.15617	22.663	22.585	22.741	0	-0.12278	-0.001831	NaN	34.932	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1706400			13820	5434	8272	8317							0.01163964575243881
HELDIETL	8	Unmodified	_HELDIETL_					0	0	0			REV__sp|P16764|UL29_HCMVAUncharacterizedproteinUL29OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=3SV=1	REV__sp|P16764|UL29_HCMVAUncharacterizedproteinUL29OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	485.2484436035156	2	485.248015	968.481476	-0.022102	-1.0725E-05	0.41735	0.00020252	0.39525	0.00019179	485.2481749163876	37.615	0.20369	37.512	37.385	37.589	-0.10318					6	3	2	0	0	0	0.057785	1	14110	14110		114.94	0	1	88029000	+		13821	17545	8273	8318	13265	13265					-0.004025290646495705
HELDIETL	8	Unmodified	_HELDIETL_					0	0	0			REV__sp|P16764|UL29_HCMVAUncharacterizedproteinUL29OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=3SV=1	REV__sp|P16764|UL29_HCMVAUncharacterizedproteinUL29OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	485.24884033203125	2	485.248015	968.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.87	1	37.568	37.068	38.068	-0.30137								0	0	0	0.54805	1	14012	14012		40.449	6.2612	1		+		13822	17545	8273	8318	13266	13266					-0.004025290646495705
HELELYNT	8	Unmodified	_HELELYNT_					0	0	0		nc|ENSG00000156535|Q6YHK3-3|CD109;CD109|p.N1348Lfs*7|1|0.05|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109	nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-3|CD109	MULTI-MSMS	HCT116MG_D190212_S4	4	509.74639892578125	2	509.745639	1017.47673	0.09648	4.918E-05	0.22087	0.00011259	0.31735	0.00016177	509.74629583911405	26.508	0.20801	26.208	26.078	26.286	-0.30087					5	3	2	0	0	0	0.60054	1	9458	9458		32.305	3.2239	1	7135400			13823	367	8274	8319	13267	13267					-0.03131413207438527
HELGEPEVRYV	11	Unmodified	_HELGEPEVRYV_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-SECPEP	HCT116MG_D190212_S2	2	663.8257446289062	2	664.335684	1326.65681	0.64995	0.00043179	0.23582	0.00015667	0.88578	0.00058845	664.3359472098342	31.629	0.26	31.38	31.25	31.51	-0.24883					7	4	2	0	0	0	0.3506	1	11663	11663		16.149	2.2431	1	26485000			13824	1502	8275	8320	13268	13268					0.006552657295742392
HELIHGSSF	9	Unmodified	_HELIHGSSF_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MSMS	HCT116MG_D190212_S1	1	513.7526245117188	2	513.753798	1025.49304	0.54066	0.00027777	-1.451	-0.00074546	-0.91035	-0.00046769	513.7530635553337	31.05	0.20826	31.05	30.867	31.076	0					6	3	2	0	0	0	0.0044301	1	11406	11406		144.35	100.49	1	6011700			13825	4427	8276	8321	13269	13269					-0.01868287250681533
HELILQKMRVF	11	Unmodified	_HELILQKMRVF_					0	0	0			REV__GFOD2|p.S138L|1|0.19|ENSG00000141098|chr16:67675900-67675900|G/A|missense_variant	REV__GFOD2|p.S138L|1|0.19|ENSG00000141098|chr16:67675900-67675900|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	707.4089965820312	2	707.405389	1412.79623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.452	1	40.074	39.574	40.574	-0.37828								0	0	0	0.94538	1	14841	14841		8.7454	2.0222	1		+		13826	16847	8277	8322	13270	13270					0.10633931813208619
HELMQVIRL	9	Unmodified	_HELMQVIRL_					0	0	0			REV__ENST00000482059.6_1_7:80267993-80269165:+|nuORF	REV__ENST00000482059.6_1_7:80267993-80269165:+|nuORF	MSMS	HCT116MG_D190212_S1	1	380.22772216796875	3	380.218226	1137.63285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.957	1	29.957	29.457	30.457	0								0	0	0	0.76793	1	10969	10969		8.1555	0	1		+		13827	15960	8278	8323	13271	13271					0.06953753762195447
HELPDVSEF	9	Unmodified	_HELPDVSEF_					0	0	0		ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	MULTI-SECPEP	HCT116MG_D190212_S1	1	536.165771484375	2	536.750921	1071.48729	0.31326	0.00016814	0.41063	0.00022041	0.72389	0.00038855	536.7511307777409	43.859	0.25639	43.859	43.73	43.986	0					6	4	2	0	0	0	0.24195	1	16589	16589		7.9102	3.5809	1	8855300			13828	3266	8279	8324	13272	13272					-0.04559430552990307
HELPDVSEF	9	Unmodified	_HELPDVSEF_					0	0	0		ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	ENSG00000134153|ENST00000256545|EMC7	MULTI-MSMS	HCT116MG_D190212_S2	2	536.75146484375	2	536.750921	1071.48729	0.59001	0.00031669	-0.20696	-0.00011108	0.38305	0.0002056	536.7508359618796	43.917	0.46242	43.839	43.556	44.019	-0.078373					13	8	2	0	0	0	0.035914	1	16633	16633		81.613	33.267	1	32315000			13829	3266	8279	8324	13273	13273					-0.04559430552990307
HELPMVERQ	9	Unmodified	_HELPMVERQ_					0	0	0		nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	MSMS	HCT116MG_D190212_S3	3	380.19244384765625	3	380.193969	1137.56008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.041	1	26.872	26.372	27.372	-0.16933								0	0	0	0.768	1	9728	9728		4.897	1.31	1				13830	1751	8280	8325	13274	13274					-0.0032000003122902854
HELQSHHF	8	Unmodified	_HELQSHHF_					0	0	0		ENST00000320623.9_1_16:69752155-69760649:-|nuORF	ENST00000320623.9_1_16:69752155-69760649:-|nuORF	ENST00000320623.9_1_16:69752155-69760649:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	517.7439575195312	2	517.743765	1033.47298	0.26622	0.00013783	0.076323	3.9516E-05	0.34254	0.00017735	517.7438646883037	19.275	0.26016	19.275	19.131	19.391	0					6	4	2	0	0	0	0.061818	1	6696	6696		110.67	10.876	1	5168900			13831	7100	8281	8326	13275	13275					-0.042420381906367766
HELQSHHF	8	Unmodified	_HELQSHHF_					0	0	0		ENST00000320623.9_1_16:69752155-69760649:-|nuORF	ENST00000320623.9_1_16:69752155-69760649:-|nuORF	ENST00000320623.9_1_16:69752155-69760649:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7435913085938	2	517.743765	1033.47298	0.18062	9.3516E-05	0.18939	9.8053E-05	0.37001	0.00019157	517.7437405307909	20.114	0.25965	19.739	19.61	19.869	-0.37503					11	4	3	0	0	0	0.040608	1	7017	7017		134.3	23.009	1	44024000			13832	7100	8281	8326	13276	13276					-0.042420381906367766
HELVKIIEVL	10	Unmodified	_HELVKIIEVL_					0	0	0			REV__GSK3A|p.G337Efs*11|1|0.5|ENSG00000105723|chr19:42233198-42233198|C/-|frameshift_variant	REV__GSK3A|p.G337Efs*11|1|0.5|ENSG00000105723|chr19:42233198-42233198|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	596.8712158203125	2	596.868631	1191.72271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.614	1	62.614	62.114	63.114	0								0	0	0	0.96453	1	24181	24181		1.4819	0.15237	1		+		13833	16861	8282	8327	13277	13277					0.13451706642422323
HEMEKAFAF	9	Unmodified	_HEMEKAFAF_					0	0	0		nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	MULTI-MSMS	HCT116MG_D190212_S1	1	555.2581787109375	2	555.257859	1108.50117	0.6455	0.00035842	0.54797	0.00030426	1.1935	0.00066268	555.2579048952864	41.315	0.3126	41.315	41.133	41.445	0					10	5	3	0	0	0	0.037825	1	15580	15580		80.676	36.269	1	14651000			13834	1328	8283	8328	13278	13278					-0.04874476325562682
HEMEKAFAF	9	Unmodified	_HEMEKAFAF_					0	0	0		nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	MULTI-MSMS	HCT116MG_D190212_S2	2	555.257568359375	2	555.257859	1108.50117	0.24684	0.00013706	-0.8886	-0.0004934	-0.64176	-0.00035634	555.2572415875106	41.267	0.3075	41.199	41.037	41.345	-0.068195					10	5	2	0	0	0	0.0068427	1	15596	15596		121.53	62.855	1	80992000			13835	1328	8283	8328	13279	13279					-0.04874476325562682
HEMEKAFAF	9	Unmodified	_HEMEKAFAF_					0	0	0		nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	MULTI-MSMS	HCT116MG_D190212_S3	3	555.259033203125	2	555.257859	1108.50117	0.18809	0.00010444	0.56527	0.00031387	0.75336	0.00041831	555.2581585573903	41.592	0.16202	41.29	41.22	41.382	-0.30257					22	9	3	0	0	0	0.011132	1	15470	15470		110.55	46.99	1	24596000			13836	1328	8283	8328	13280	13280					-0.04874476325562682
HEMEKAFAF	9	Unmodified	_HEMEKAFAF_					0	0	0		nc|ENSG00000075975|Q9H000-2|MKRN2;ENSG00000075975|ENST00000170447|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	nc|ENSG00000075975|Q9H000-2|MKRN2	MSMS	HCT116MG_D190212_S4	4	555.2575073242188	2	555.257859	1108.50117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.705	1	41.328	40.828	41.828	-0.37637								0	0	0	0.067027	1	15303	15303		65.474	21.067	1				13837	1328	8283	8328	13281	13281					-0.04874476325562682
HEMPKTFTF	9	Unmodified	_HEMPKTFTF_					0	0	0		ENSG00000101350|ENST00000375712|KIF3B;KIF3B-TOX2|2|fusion;KIF3B-TOX2|1|fusion	ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2731323242188	2	569.273509	1136.53247	0.4603	0.00026203	-0.67977	-0.00038697	-0.21947	-0.00012494	569.2731310282607	41.922	0.31165	41.854	41.653	41.964	-0.068199					12	5	4	0	0	0	0.0064416	1	15873	15873		125.04	70.264	1	28842000			13838	1780	8284	8329	13282	13282					-0.03033903291475326
HEMTKTASA	9	Unmodified	_HEMTKTASA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	HCT116MG_D190212_S2	2	488.23223876953125	2	488.231842	974.44913	0.090552	4.421E-05	0.17785	8.6832E-05	0.2684	0.00013104	488.2319166106971	11.172	0.34034	10.891	10.743	11.083	-0.28186					26	14	2	0	0	0	0.066823	1	3575	3575		66.457	46.003	1	1182400			13839	1113	8285	8330	13283	13283					-0.03911639739305883
HEMTKTASA	9	Unmodified	_HEMTKTASA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	HCT116MG_D190212_S2	2	488.23211669921875	2	488.231842	974.44913	0.092088	4.496E-05	-0.068051	-3.3224E-05	0.024037	1.1736E-05	488.23194287266847	14.48	0.15529	14.161	14.037	14.192	-0.31952					6	2	3	0	0	0	0.071914	1	4753	4753		63.961	42.214	1	3334800			13840	1113	8285	8330	13284	13284					-0.03911639739305883
HEMVIYEA	8	Unmodified	_HEMVIYEA_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MSMS	HCT116MG_D190212_S3	3	496.2755126953125	2	496.23131	990.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.494	1	37.193	36.693	37.693	-0.30137								0	0	0	0.68119	1	13890	13890		32.117	18.609	1				13841	4383	8286	8331	13285	13285					-0.04753854108219002
HEMVIYEA	8	Unmodified	_HEMVIYEA_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MSMS	HCT116MG_D190212_S3	3	496.2304992675781	2	496.23131	990.448068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.581	1	37.279	36.779	37.779	-0.30137								0	0	0	0.027805	1	13925	13925		101.72	63.571	1				13842	4383	8286	8331	13286	13286					-0.04753854108219002
HEMVVYEA	8	Unmodified	_HEMVVYEA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	489.2236633300781	2	489.223485	976.432418	0.49063	0.00024003	-0.29309	-0.00014339	0.19754	9.6643E-05	489.22334385035305	33.163	0.46678	33.163	32.985	33.452	0					19	8	4	0	0	0	0.057785	2	12249	12242;12249		114.94	76.793	1	57591000			13843	5641	8287	8332	13287;13288	13288					-0.0567414062526268
HEMVVYEA	8	Unmodified	_HEMVVYEA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	977.4403686523438	1	977.439694	976.432418	0.78864	0.00077084	-0.31099	-0.00030398	0.47764	0.00046687	977.4393229040935	33.115	0.31107	33.115	32.985	33.296	0					10	5	3	0	0	0	0.12463	1	12268	12268		89.427	63.086	1	14221000			13844	5641	8287	8332	13289	13289					-0.0567414062526268
HEMVVYEA	8	Unmodified	_HEMVVYEA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	489.2236633300781	2	489.223485	976.432418	0.15846	7.752E-05	0.36689	0.00017949	0.52534	0.00025701	489.2235716006806	33.568	0.46186	33.278	33.049	33.511	-0.29013					19	8	3	0	0	0	0.057785	1	12305	12305		114.94	76.793	1	130210000			13845	5641	8287	8332	13290	13290					-0.0567414062526268
HEMVVYEA	8	Unmodified	_HEMVVYEA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	977.4386596679688	1	977.439694	976.432418	0.68068	0.00066533	-0.22565	-0.00022056	0.45503	0.00044477	977.4394135582176	33.568	0.31145	33.278	33.096	33.408	-0.29013					12	5	3	0	0	0	0.12463	1	12316	12316		89.427	59.202	1	27665000			13846	5641	8287	8332	13291	13291					-0.0567414062526268
HEMVVYEA	8	Unmodified	_HEMVVYEA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S4	4	489.7251281738281	2	489.223485	976.432418	0.21205	0.00010374	0.21923	0.00010725	0.43128	0.00021099	489.2235136193828	33.668	0.63702	33.284	33.088	33.725	-0.38426					27	12	4	0	0	0	0.070772	1	12248	12248		101.72	71.497	1	65634000			13847	5641	8287	8332	13292	13292					-0.0567414062526268
HEMVVYEA	8	Unmodified	_HEMVVYEA_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S4	4	977.44091796875	1	977.439694	976.432418	0.82134	0.00080282	-0.20631	-0.00020165	0.61504	0.00060116	977.4394783641551	33.645	0.28726	33.26	33.126	33.413	-0.38426					11	5	3	0	0	0	0.12463	1	12254	12254		89.427	64.753	1	13394000			13848	5641	8287	8332	13293	13293					-0.0567414062526268
HEMVVYEA	8	Oxidation (M)	_HEM(Oxidation (M))VVYEA_		HEM(1)VVYEA		HEM(78)VVYEA	0	0	1		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	497.22113037109375	2	497.220943	992.427332	0.36571	0.00018184	0.11542	5.7391E-05	0.48113	0.00023923	497.22098465278776	27.159	0.36456	26.99	26.807	27.172	-0.16933					12	6	3	0	0	0	0.17804	1	9779	9779		77.984	51.101	1	13636000			13849	5641	8287	8333	13294	13294		122			-0.06918444487871511
HEMVVYEA	8	Oxidation (M)	_HEM(Oxidation (M))VVYEA_		HEM(1)VVYEA		HEM(89)VVYEA	0	0	1		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S4	4	497.221435546875	2	497.220943	992.427332	0.54044	0.00026872	0.21087	0.00010485	0.75131	0.00037357	497.2208881695761	27.344	0.41539	27.033	26.847	27.262	-0.3114					13	7	3	0	0	0	0.12463	1	9785	9785		89.427	64.027	1	10609000			13850	5641	8287	8333	13295	13295		122			-0.06918444487871511
HENDITHFY	9	Unmodified	_HENDITHFY_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	HCT116MG_D190212_S1	1	588.260009765625	2	588.259445	1174.50434	0.72709	0.00042771	0.51579	0.00030342	1.2429	0.00073113	588.2596593125054	35.931	0.26075	35.931	35.785	36.046	0					10	4	3	0	0	0	0.0041644	1	13393	13393		148.27	102.53	1	9876700			13851	2215	8288	8334	13296	13296					-0.0759350994721899
HENDITHFY	9	Unmodified	_HENDITHFY_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	HCT116MG_D190212_S2	2	588.2599487304688	2	588.259445	1174.50434	0.97547	0.00057383	-0.3334	-0.00019613	0.64207	0.0003777	588.2591147177244	35.948	0.30967	35.82	35.658	35.967	-0.12799					11	5	3	0	0	0	0.0041644	1	13440	13440		148.27	102.53	1	33846000			13852	2215	8288	8334	13297	13297					-0.0759350994721899
HENDTIAKY	9	Unmodified	_HENDTIAKY_					0	0	0		ENST00000527586.1_1_11:134109936-134113358:+|nuORF;ENSG00000151502|ENST00000281187|VPS26B	ENST00000527586.1_1_11:134109936-134113358:+|nuORF	ENST00000527586.1_1_11:134109936-134113358:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	545.2463989257812	2	545.76182	1089.50909	0.47366	0.00025851	0.4347	0.00023724	0.90837	0.00049575	545.7618170855047	23.102	0.15636	23.102	23.001	23.158	0					4	2	2	0	0	0	0.07978	1	8210	8210		65.474	31.072	1	3396400			13853	4116	8289	8335	13298	13298					-0.03208625804427356
HENDTIAKY	9	Unmodified	_HENDTIAKY_					0	0	0		ENST00000527586.1_1_11:134109936-134113358:+|nuORF;ENSG00000151502|ENST00000281187|VPS26B	ENST00000527586.1_1_11:134109936-134113358:+|nuORF	ENST00000527586.1_1_11:134109936-134113358:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	546.3009643554688	2	545.76182	1089.50909	0.47542	0.00025946	-0.26925	-0.00014695	0.20617	0.00011252	545.7621048042537	23.661	0.25958	23.278	23.091	23.351	-0.38324					8	4	3	0	0	0	0.11907	1	8424	8424		53.404	30.256	1	9721800			13854	4116	8289	8335	13299	13299					-0.03208625804427356
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	538.7542114257812	2	538.753995	1075.49344	0.39161	0.00021098	0.0076907	4.1434E-06	0.3993	0.00021512	538.753975678122	18.683	0.57331	18.683	18.506	19.079	0					32	10	6	0	0	0	0.0039465	1	6418	6418		151.48	109.64	1	167360000			13855	5672	8290	8336	13300	13300					-0.041289123214710344
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	538.7540893554688	2	538.753995	1075.49344	0.47384	0.00025528	-0.1626	-8.7599E-05	0.31124	0.00016768	538.7540622316072	19.283	0.6243	18.914	18.732	19.356	-0.3695					29	11	3	0	0	0	0.0034268	1	6678	6678		179.28	129.35	1	1089200000			13856	5672	8290	8336	13301	13301					-0.041289123214710344
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.738037109375	2	538.753995	1075.49344	0.42087	0.00022675	-0.54257	-0.00029231	-0.1217	-6.5564E-05	538.7535424212009	19.868	0.51886	19.493	19.351	19.869	-0.37503					14	9	2	0	0	0	0.19289	1	6940	6940		32.037	18.131	1	2851100			13857	5672	8290	8336	13302	13302					-0.041289123214710344
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	538.7540893554688	2	538.753995	1075.49344	0.40411	0.00021772	-0.032877	-1.7713E-05	0.37123	0.0002	538.7539531609667	18.207	0.62485	18.283	18.101	18.726	0.076334					33	11	5	0	0	0	0.0034966	2	6149	6149;6249		166.77	124.93	1	165930000			13858	5672	8290	8336	13303;13304	13303					-0.041289123214710344
HENESVYKA	9	Unmodified	_HENESVYKA_					0	0	0		ENST00000578492.5_1_17:62746826-62750158:-|nuORF;ENSG00000182481|ENST00000330459|KPNA2	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	ENST00000578492.5_1_17:62746826-62750158:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	538.7539672851562	2	538.753995	1075.49344	0.34359	0.00018511	0.041724	2.2479E-05	0.38531	0.00020759	538.7539943197514	18.562	0.57191	18.381	18.199	18.771	-0.18052					17	10	3	0	0	0	0.0060369	2	6240	6234;6240		128.57	97.936	1	27395000			13859	5672	8290	8336	13305;13306	13306					-0.041289123214710344
HENPDIIIA	9	Unmodified	_HENPDIIIA_					0	0	0		ENST00000546869.1_1_12:113614643-113615134:-|nuORF;DDX54|p.G271Afs*41|1|0.25|ENSG00000123064|chr12:113175098-113175098|C/-|frameshift_variant;DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant;DDX54|p.R734Lfs*97|1|0.27|ENSG00000123064|chr12:113161992-113161992|C/-|frameshift_variant;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENST00000546869.1_1_12:113614643-113615134:-|nuORF	ENST00000546869.1_1_12:113614643-113615134:-|nuORF	MSMS	HCT116MG_D190212_S2	2	511.26953125	2	511.269281	1020.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.88	1	39.807	39.307	40.307	-0.072838								0	0	0	0.27628	1	15024	15024		41.84	14.956	1				13860	659	8291	8337	13307	13307					0.014568660635632114
HENPDIIIA	9	Unmodified	_HENPDIIIA_					0	0	0		ENST00000546869.1_1_12:113614643-113615134:-|nuORF;DDX54|p.G271Afs*41|1|0.25|ENSG00000123064|chr12:113175098-113175098|C/-|frameshift_variant;DDX54|p.G702Efs*14|1|0.58|ENSG00000123064|chr12:113163022-113163022|C/-|frameshift_variant;DDX54|p.R734Lfs*97|1|0.27|ENSG00000123064|chr12:113161992-113161992|C/-|frameshift_variant;ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENST00000546869.1_1_12:113614643-113615134:-|nuORF	ENST00000546869.1_1_12:113614643-113615134:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	511.2691650390625	2	511.269281	1020.52401	0.011187	5.7198E-06	0.17846	9.1239E-05	0.18964	9.6959E-05	511.2692630034372	40.176	0.34146	39.874	39.666	40.007	-0.30137					14	6	3	0	0	0	0.077982	1	14897	14897		62.573	26.446	1	4139800			13861	659	8291	8337	13308	13308					0.014568660635632114
HENPEWEKA	9	Unmodified	_HENPEWEKA_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8;ENSG00000167615|ENST00000326764|LENG8;LENG8|p.P32L|1|0.28|ENSG00000167615|chr19:54452149-54452149|C/T|missense_variant;LENG8|p.G377Vfs*32|1|0.16|ENSG00000167615|chr19:54456067-54456067|G/-|frameshift_variant;LENG8|p.G464Afs*44|1|0.21|ENSG00000167615|chr19:54456408-54456408|G/-|frameshift_variant	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-MSMS	HCT116MG_D190212_S2	2	570.2595825195312	2	570.259445	1138.50434	0.44413	0.00025327	0.32875	0.00018747	0.77288	0.00044074	570.2593305442766	24.662	0.26094	24.282	24.135	24.396	-0.38003					7	4	2	0	0	0	0.47413	1	8880	8880		18.373	10.218	1	5482300			13862	4937	8292	8338	13309	13309					-0.059375099471935755
HENPEWEKA	9	Unmodified	_HENPEWEKA_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8;ENSG00000167615|ENST00000326764|LENG8;LENG8|p.P32L|1|0.28|ENSG00000167615|chr19:54452149-54452149|C/T|missense_variant;LENG8|p.G377Vfs*32|1|0.16|ENSG00000167615|chr19:54456067-54456067|G/-|frameshift_variant;LENG8|p.G464Afs*44|1|0.21|ENSG00000167615|chr19:54456408-54456408|G/-|frameshift_variant	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	MSMS	HCT116MG_D190212_S3	3	570.2593994140625	2	570.259445	1138.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.165	1	24.104	23.604	24.604	-0.061449								0	0	0	0.38693	1	8568	8568		34.222	16.779	1				13863	4937	8292	8338	13310	13310					-0.059375099471935755
HENPEWEKA	9	Unmodified	_HENPEWEKA_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8;ENSG00000167615|ENST00000326764|LENG8;LENG8|p.P32L|1|0.28|ENSG00000167615|chr19:54452149-54452149|C/T|missense_variant;LENG8|p.G377Vfs*32|1|0.16|ENSG00000167615|chr19:54456067-54456067|G/-|frameshift_variant;LENG8|p.G464Afs*44|1|0.21|ENSG00000167615|chr19:54456408-54456408|G/-|frameshift_variant	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-MATCH	HCT116MG_D190212_S3	3		2	570.259445	1138.50434	0.325	0.00018533	-0.19281	-0.00010995	0.13219	7.5384E-05	570.2592850403554	24.087	0.20846	24.025	23.895	24.103	-0.061449	-0.12841	-6.4837E-05	NaN	18.373	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2105700			13864	4937	8292	8338							-0.059375099471935755
HEQHNFLRWIR	11	Unmodified	_HEQHNFLRWIR_					0	0	0			REV__ENSG00000162980|ENST00000295087|ARL5A	REV__ENSG00000162980|ENST00000295087|ARL5A	MSMS	HCT116MG_D190212_S3	3	768.4039306640625	2	768.402558	1534.79056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.077	1	46.763	46.263	47.263	-0.31405								0	0	0	0.95196	1	17669	17669		5.2969	1.7004	1		+		13865	12904	8293	8339	13311	13311					0.04455969345781341
HEQQFAHPP	9	Unmodified	_HEQQFAHPP_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7621459960938	2	545.756872	1089.49919	0.68666	0.00037475	-0.2634	-0.00014375	0.42325	0.00023099	545.756705715061	24.021	0.72836	23.637	23.351	24.079	-0.38324					21	13	2	0	0	0	0.031089	1	8474	8474		85.272	54.635	1	26573000			13866	3105	8294	8340	13312	13312					-0.04197769019151565
HEQQFAHPP	9	Unmodified	_HEQQFAHPP_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	HCT116MG_D190212_S3	3	545.7569580078125	2	545.756872	1089.49919	0.44149	0.00024095	-0.31298	-0.00017081	0.12851	7.0137E-05	545.756659471244	23.409	0.62529	23.369	23.083	23.708	-0.03968					16	11	2	0	0	0	0.0034607	1	8261	8261		163.04	98.8	1	7700900			13867	3105	8294	8340	13313	13313					-0.04197769019151565
HEQQFAHPP	9	Unmodified	_HEQQFAHPP_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MATCH	HCT116MG_D190212_S1	1		2	545.756872	1089.49919	0.45401	0.00024778	-1.1694	-0.00063821	-0.7154	-0.00039043	545.7564109623793	23.476	0.41756	23.476	23.21	23.627	0	-0.018405	-0.00095861	NaN	163.04	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3976100			13868	3105	8294	8340							-0.04197769019151565
HERDMHSAY	9	Unmodified	_HERDMHSAY_					0	0	0		nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70	nc|ENSG00000104852|P08621-2|SNRNP70	nc|ENSG00000104852|P08621-2|SNRNP70	MULTI-MSMS	HCT116MG_D190212_S2	2	573.243408203125	2	573.243272	1144.47199	0.36546	0.0002095	0.0043835	2.5128E-06	0.36984	0.00021201	573.2431509429907	17.667	0.20877	17.31	17.18	17.388	-0.35647					5	3	2	0	0	0	0.23993	1	6041	6041		37.075	13.926	1	4619800			13869	1957	8295	8341	13314	13314					-0.0944662062183852
HERRRRRILQL	11	Unmodified	_HERRRRRILQL_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MSMS	HCT116MG_D190212_S1	1	511.9844665527344	3	511.650075	1531.92839	0.36192	0.00018518	0.033773	1.728E-05	0.39569	0.00020246	511.6499458499556	56.553	0.77496	56.553	56.377	57.152	0					37	14	4	0	0	0	0.74191	1	21813	21813		0	0	1	137780000	+		13870	14188	8296	8342	13315	13315					0.18370717665084157
HERRRRRILQL	11	Unmodified	_HERRRRRILQL_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	HCT116MG_D190212_S1	1	512.2703247070312	3	511.650075	1531.92839	0.36192	0.00018518	0.033773	1.728E-05	0.39569	0.00020246	511.6499458499556	56.553	0.77496	56.553	56.377	57.152	0					37	14	4	0	0	0	0.36631	1	21948	21948		0	0	1	137780000	+		13871	14188	8296	8342	13316	13316					0.18370717665084157
HERTHSGG	8	Unmodified	_HERTHSGG_					0	0	0		nc|ENSG00000181896|Q8IZC7-2|ZNF101;ENSG00000181896|ENST00000592502|ZNF101	nc|ENSG00000181896|Q8IZC7-2|ZNF101	nc|ENSG00000181896|Q8IZC7-2|ZNF101	MULTI-MSMS	HCT116MG_D190212_S2	2	880.4050903320312	1	880.402003	879.394727	0.80738	0.00071082	-2.5093	-0.0022092	-1.7019	-0.0014983	880.4004499950198	51.014	0.20738	50.836	50.706	50.914	-0.17868					6	3	2	0	0	0	0.69862	1	19579	19579		23.148	5.0134	1	13886000			13872	5647	8297	8343	13317	13317					-0.049794707758451295
HERVKKRIGSG	11	Unmodified	_HERVKKRIGSG_					0	0	0			REV__tr|U7T3F6|U7T3F6_FUSNURNAmethyltransferase,TrmHfamily,group3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00624PE=4SV=1	REV__tr|U7T3F6|U7T3F6_FUSNURNAmethyltransferase,TrmHfamily,group3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00624PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	423.2749938964844	3	422.917827	1265.73165	0.20869	8.8258E-05	-2.7975	-0.0011831	-2.5889	-0.0010949	422.91649706509884	53.187	0.26026	52.853	52.671	52.931	-0.33473					6	4	2	0	0	0	0.3662	1	19794	19794		1.2148	0.4383	1	1274400	+		13873	17947	8298	8344	13318	13318					0.1094149305145038
HERVTRRMWTW	11	Unmodified	_HERVTRRMWTW_					0	0	0		nc|ENSG00000185008|Q9HCK4-3|ROBO2	nc|ENSG00000185008|Q9HCK4-3|ROBO2	nc|ENSG00000185008|Q9HCK4-3|ROBO2	MSMS	HCT116MG_D190212_S1	1	779.3941040039062	2	779.396419	1556.77828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.908	1	28.908	28.408	29.408	0								0	0	0	0.95636	1	10546	10546		2.9952	1.9238	1				13874	9580	8299	8345	13319	13319					0.022166096110822764
HESAAMAA	8	Unmodified	_HESAAMAA_					0	0	0		TMEM123-MMP20|1|fusion;ENSG00000152558|ENST00000398136|TMEM123;TMEM123-MMP20|2|fusion	TMEM123-MMP20|1|fusion	TMEM123-MMP20|1|fusion	MULTI-MSMS	HCT116MG_D190212_S2	2	787.3407592773438	1	787.340314	786.333038	0.89368	0.00070363	0.034896	2.7475E-05	0.92858	0.00073111	787.3402192232301	19.179	0.20823	18.81	18.68	18.888	-0.3695					5	3	2	0	0	0	0.13911	1	6666	6666		86.121	41.714	1	4836000			13875	4155	8300	8346	13320	13320					-0.06867538519372829
HESDFSGVTP	10	Unmodified	_HESDFSGVTP_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.7635498046875	2	538.238178	1074.4618	0.37438	0.00020151	-0.13992	-7.5309E-05	0.23446	0.0001262	538.2379463091775	32.563	0.46828	32.333	31.995	32.463	-0.23009					13	8	2	0	0	0	0.25856	1	12034	12034		18.146	14.202	1	9280200			13876	1618	8301	8347	13321	13321					-0.07244905075413044
HESDVKIVA	9	Unmodified	_HESDVKIVA_					0	0	0		WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;nc|ENSG00000165238|Q9Y3S1-3|WNK2	WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	499.26953125	2	499.269281	996.52401	0.5176	0.00025842	-0.38838	-0.00019391	0.12922	6.4517E-05	499.26931440751457	25.388	0.20789	25.282	25.152	25.36	-0.10618					5	3	2	0	0	0	0.071914	1	9086	9086		63.961	29.559	1	5805800			13877	4757	8302	8348	13322	13322					0.025608660635725755
HESGELNQY	9	Unmodified	_HESGELNQY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S1	1	538.7356567382812	2	538.735803	1075.45705	0.31434	0.00016935	-0.54909	-0.00029581	-0.23475	-0.00012647	538.7355116128898	25.275	0.36463	25.275	25.144	25.509	0					10	6	3	0	0	0	0.069315	1	9110	9110		65.235	33.967	1	9961200			13878	1446	8303	8349	13323	13323					-0.07765789218183272
HESGELNQY	9	Unmodified	_HESGELNQY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S2	2	538.7361450195312	2	538.735803	1075.45705	0.42447	0.00022868	0.079648	4.2909E-05	0.50412	0.00027159	538.7356716404508	25.734	0.31113	25.365	25.187	25.498	-0.36914					11	5	3	0	0	0	0.12994	1	9310	9310		52.268	29.532	1	21015000			13879	1446	8303	8349	13324	13324					-0.07765789218183272
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	467.7412109375	2	467.740691	933.466829	0.20109	9.4059E-05	-0.096827	-4.529E-05	0.10426	4.8769E-05	467.7406188162821	22.872	0.78172	22.872	22.689	23.471	0					35	14	4	0	0	0	0.0047811	1	8099	8099		139.54	84.77	1	469730000			13880	3431	8304	8350	13325	13325					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	934.4745483398438	1	934.474106	933.466829	0.88126	0.00082351	-0.0078642	-7.3489E-06	0.87339	0.00081616	934.4741503674741	22.872	0.31257	22.872	22.741	23.054	0					11	5	3	0	0	0	0.0037442	1	8133	8133		154.46	87.12	1	17391000			13881	3431	8304	8350	13326	13326					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	467.7408142089844	2	467.740691	933.466829	0.1635	7.6477E-05	-0.26408	-0.00012352	-0.10058	-4.7046E-05	467.7406497249668	23.5	1.039	23.117	22.936	23.975	-0.38324					58	19	6	0	0	0	0.0047811	2	8379	8379;8616		139.54	76.971	1	2523100000			13882	3431	8304	8350	13327;13328	13327					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	934.4747924804688	1	934.474106	933.466829	0.67694	0.00063259	0.0171	1.598E-05	0.69404	0.00064856	934.4740231874366	23.5	0.57209	23.117	22.988	23.56	-0.38324					24	10	4	0	0	0	0.0037442	1	8381	8381		154.46	90.227	1	260650000			13883	3431	8304	8350	13329	13329					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S3	3	467.7406921386719	2	467.740691	933.466829	0.20227	9.4611E-05	-0.14997	-7.0146E-05	0.052305	2.4465E-05	467.74065718966256	22.588	1.0294	22.569	22.335	23.364	-0.018869					50	19	5	0	0	0	0.0063744	1	7912	7912		125.62	70.851	1	544170000			13884	3431	8304	8350	13330	13330					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S3	3	934.4741821289062	1	934.474106	933.466829	0.69101	0.00064573	9.6587E-05	9.0258E-08	0.69111	0.00064582	934.4738504980589	22.588	0.35823	22.569	22.439	22.797	-0.018869					12	6	3	0	0	0	0.0037442	1	7934	7934		154.46	87.12	1	19672000			13885	3431	8304	8350	13331	13331					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S4	4	467.74072265625	2	467.740691	933.466829	-0.16154	-7.556E-05	0.31705	0.0001483	0.15551	7.2739E-05	467.7407984206001	23.023	0.62696	22.786	22.603	23.23	-0.23758					29	11	4	0	0	0	0.010304	1	8040	8040		112.59	66.572	1	76370000			13886	3431	8304	8350	13332	13332					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S4	4	934.4744873046875	1	934.474106	933.466829	0.52076	0.00048664	0.14006	0.00013089	0.66082	0.00061752	934.4741931585239	23.074	0.26027	22.836	22.655	22.916	-0.23758					6	4	2	0	0	0	0.016134	1	8068	8068		100.37	42.9	1	4540400			13887	3431	8304	8350	13333	13333					-0.0025655642216406704
HESGHAIIAY	10	Unmodified	_HESGHAIIAY_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	549.2728271484375	2	549.272355	1096.53016	0.62597	0.00034383	0.083228	4.5715E-05	0.7092	0.00038955	549.2723043322242	31.414	0.52065	31.414	31.232	31.753	0					21	9	4	0	0	0	0.02258	1	11558	11558		115.69	69.671	1	81705000			13888	3431	8305	8351	13334	13334					-0.014246157049228714
HESGHAIIAY	10	Unmodified	_HESGHAIIAY_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2726440429688	2	549.272355	1096.53016	0.62878	0.00034537	0.025296	1.3895E-05	0.65408	0.00035927	549.2723501422063	31.681	0.31091	31.432	31.302	31.613	-0.24883					16	5	4	0	0	0	0.0061181	1	11696	11696		164.52	118.49	1	361630000			13889	3431	8305	8351	13335	13335					-0.014246157049228714
HESGHAIIAY	10	Unmodified	_HESGHAIIAY_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	1097.538330078125	1	1097.53743	1096.53016	0.90079	0.00098865	-0.32539	-0.00035713	0.5754	0.00063152	1097.537193319727	31.681	0.20833	31.432	31.302	31.51	-0.24883					5	3	2	0	0	0	0.013181	1	11722	11722		136.33	90.312	1	25338000			13890	3431	8305	8351	13336	13336					-0.014246157049228714
HESILDRW	8	Unmodified	_HESILDRW_					0	0	0			REV__SLFN11|p.G503Afs*15|1|0.2|ENSG00000172716|chr17:35353750-35353750|C/-|frameshift_variant	REV__SLFN11|p.G503Afs*15|1|0.2|ENSG00000172716|chr17:35353750-35353750|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	528.265380859375	2	528.267073	1054.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.345	1	41.277	40.777	41.777	-0.068199								0	0	0	0.75335	1	15619	15619		26.341	1.3503	1		+		13891	13398	8306	8352	13337	13337					-0.005485983593416677
HESNFAQHQ	9	Unmodified	_HESNFAQHQ_					0	0	0		ENSG00000197863|ENST00000356725|ZNF790	ENSG00000197863|ENST00000356725|ZNF790	ENSG00000197863|ENST00000356725|ZNF790	MSMS	HCT116MG_D190212_S1	1	549.2418212890625	2	549.241587	1096.46862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.915	1	22.915	22.415	23.415	0								0	0	0	0.76834	1	8136	8136		6.7232	0	1				13892	6182	8307	8353	13338	13338					-0.07575547404212557
HETTFNSI	8	Unmodified	_HETTFNSI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000418351.1_1_15:44281261-44281585:-|nuORF;ENST00000437653.1_1_3:175695464-175695797:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	HCT116MG_D190212_S2	2	474.7246398925781	2	474.724707	947.43486	0.51803	0.00024592	0.37103	0.00017614	0.88906	0.00042206	474.7244494355781	34.527	0.25758	34.351	34.227	34.485	-0.17512					8	4	3	0	0	0	0.31507	1	12886	12886		5.2307	0	1	16561000			13893	1322	8308	8354	13339	13339					-0.04095968895956048
HEVEVQYY	8	Unmodified	_HEVEVQYY_					0	0	0		STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2;STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;ENST00000533343.1_1_11:4103494-4104733:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1	STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant	STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7457275390625	2	533.745639	1065.47673	0.52658	0.00028106	-0.19353	-0.0001033	0.33305	0.00017777	533.7456096316182	33.219	0.31092	33.219	33.037	33.348	0					11	5	3	0	0	0	0.070772	1	12294	12294		101.72	38.159	1	17966000			13894	2216	8309	8355	13340	13340					-0.053394132074117806
HEVEVQYY	8	Unmodified	_HEVEVQYY_					0	0	0		STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2;STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2;ENST00000533343.1_1_11:4103494-4104733:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1	STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant	STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7456665039062	2	533.745639	1065.47673	0.79842	0.00042615	-0.20664	-0.00011029	0.59177	0.00031586	533.7455097393993	33.415	0.30742	33.222	33.071	33.378	-0.19297					12	5	3	0	0	0	0.057785	1	12414	12414		114.94	40.547	1	44130000			13895	2216	8309	8355	13341	13341					-0.053394132074117806
HEVKAEGY	8	Unmodified	_HEVKAEGY_					0	0	0		ENST00000527623.1_1_19:46891683-46893600:+|nuORF;ENST00000487483.6_1_19:46891669-46893605:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000527623.1_1_19:46891683-46893600:+|nuORF	ENST00000527623.1_1_19:46891683-46893600:+|nuORF	MSMS	HCT116MG_D190212_S1	1	466.72772216796875	2	466.727249	931.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.952	1	17.952	17.452	18.452	0								0	0	0	0.41781	1	6142	6142		47.749	17.524	1				13896	896	8310	8356	13342	13342					-0.028516650333358484
HEVKAEGY	8	Unmodified	_HEVKAEGY_					0	0	0		ENST00000527623.1_1_19:46891683-46893600:+|nuORF;ENST00000487483.6_1_19:46891669-46893605:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000527623.1_1_19:46891683-46893600:+|nuORF	ENST00000527623.1_1_19:46891683-46893600:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	466.7270202636719	2	466.727249	931.439946	-0.23487	-0.00010962	-0.079458	-3.7085E-05	-0.31433	-0.00014671	466.7271788225196	18.554	0.26085	18.191	18.008	18.269	-0.36325					8	4	3	0	0	0	0.22303	1	6403	6403		69.105	27.265	1	7561200			13897	896	8310	8356	13343	13343					-0.028516650333358484
HEVKAEGY	8	Unmodified	_HEVKAEGY_					0	0	0		ENST00000527623.1_1_19:46891683-46893600:+|nuORF;ENST00000487483.6_1_19:46891669-46893605:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000527623.1_1_19:46891683-46893600:+|nuORF	ENST00000527623.1_1_19:46891683-46893600:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	466.727249	931.439946	0.33768	0.0001576	-0.082513	-3.8511E-05	0.25516	0.00011909	466.72713748134674	17.906	0.15647	17.906	17.776	17.933	0	-0.14235	-1.7277E-06	NaN	69.105	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3993100			13898	896	8310	8356							-0.028516650333358484
HEVLLVSLNAG	11	Unmodified	_HEVLLVSLNAG_					0	0	0			REV__ENSG00000197157|ENST00000354725|SND1	REV__ENSG00000197157|ENST00000354725|SND1	MSMS	HCT116MG_D190212_S3	3	576.3218383789062	2	576.324588	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.426	1	44.118	43.618	44.618	-0.30759								0	0	0	0.95636	1	16607	16607		2.9952	0	1		+		13899	14061	8311	8357	13344	13344					0.06533086051786086
HEVLTFIKY	9	Unmodified	_HEVLTFIKY_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	HCT116MG_D190212_S2	2	575.3192138671875	2	575.318774	1148.623	0.36068	0.0002075	0.29528	0.00016988	0.65596	0.00037739	575.3189339160458	45.374	0.30974	45.281	45.101	45.411	-0.092472					11	5	3	0	0	0	0.030601	1	17260	17260		103.42	72.783	1	36965000			13900	3838	8312	8358	13345	13345					0.054628890284675435
HEVLTRTAF	9	Unmodified	_HEVLTRTAF_					0	0	0		ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	ENSG00000144840|ENST00000273375|RABL3	MULTI-SECPEP	HCT116MG_D190212_S2	2	537.26708984375	2	537.290548	1072.56654	0.36265	0.00019485	2.56	0.0013755	2.9227	0.0015703	537.2916573764626	32.354	0.15583	32.124	32.046	32.202	-0.23009					4	2	2	0	0	0	0.17321	1	11995	11995		36.506	0	1	6424400			13901	3889	8313	8359	13346	13346					0.033162611917987306
HEVPLRIGF	9	Unmodified	_HEVPLRIGF_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant;ENSG00000102595|ENST00000376747|UGGT2	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	534.3031616210938	2	534.303458	1066.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.147	1	45.054	44.554	45.554	-0.092472								0	0	0	0.014652	1	17161	17161		99.755	48.9	1				13902	18679	8314	8360	13347	13347					0.061731554340894945
HEVPYTTSF	9	Unmodified	_HEVPYTTSF_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-MSMS	HCT116MG_D190212_S1	1	540.7537231445312	2	540.753464	1079.49238	0.3798	0.00020538	-0.84052	-0.00045451	-0.46072	-0.00024914	540.7533702922133	37.826	0.36515	37.826	37.602	37.968	0					9	6	2	0	0	0	0.042978	1	14153	14153		78.149	33.742	1	7874100			13903	2652	8315	8361	13348	13348					-0.0441912669039084
HEVPYTTSF	9	Unmodified	_HEVPYTTSF_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-MSMS	HCT116MG_D190212_S2	2	540.7532348632812	2	540.753464	1079.49238	0.25568	0.00013826	-1.0129	-0.00054774	-0.75723	-0.00040947	540.7530752476264	37.876	0.30891	37.783	37.651	37.96	-0.093006					11	5	3	0	0	0	0.027492	1	14233	14233		88.904	38.049	1	48710000			13904	2652	8315	8361	13349	13349					-0.0441912669039084
HEVPYTTSF	9	Unmodified	_HEVPYTTSF_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-MSMS	HCT116MG_D190212_S3	3	540.75390625	2	540.753464	1079.49238	0.53089	0.00028708	-1.4257	-0.00077096	-0.89482	-0.00048388	540.7535018312827	38.109	0.27691	37.807	37.66	37.937	-0.30137					9	5	2	0	0	0	0.042978	1	14119	14119		78.149	36.055	1	5692000			13905	2652	8315	8361	13350	13350					-0.0441912669039084
HEVPYTTSF	9	Unmodified	_HEVPYTTSF_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MSMS	HCT116MG_D190212_S4	4	540.8711547851562	2	540.753464	1079.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.263	1	37.88	37.38	38.38	-0.38283								0	0	0	0.1044	1	14017	14017		54.774	27.89	1				13906	2652	8315	8361	13351	13351					-0.0441912669039084
HEVRIGWSL	9	Unmodified	_HEVRIGWSL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MSMS	HCT116MG_D190212_S2	2	366.2020263671875	3	366.201452	1095.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.182	1	25.821	25.321	26.321	-0.36164								0	0	0	0.76699	1	9461	9461		11.495	1.3441	1				13907	4179	8316	8362	13352	13352					0.03855967428717122
HEVRIGWSL	9	Unmodified	_HEVRIGWSL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MSMS	HCT116MG_D190212_S2	2	366.20233154296875	3	366.201452	1095.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.875	1	33.688	33.188	34.188	-0.18695								0	0	0	0.76809	1	12584	12584		7.609	0.31972	1				13908	4179	8316	8362	13353	13353					0.03855967428717122
HEVTGLLSELP	11	Unmodified	_HEVTGLLSELP_					0	0	0			REV__ENSG00000076513|ENST00000261739|ANKRD13A	REV__ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-MSMS	HCT116MG_D190212_S2	2	398.88372802734375	3	398.883677	1193.6292	-0.018191	-7.2563E-06	-0.022812	-9.0994E-06	-0.041004	-1.6356E-05	398.88371789415254	19.335	0.20864	18.966	18.836	19.044	-0.3695					6	3	2	0	0	0	0.72055	1	6724	6724		14.218	0	1	10052000	+		13909	10820	8317	8363	13354	13354					0.040133624693453385
HEVTGLLSELP	11	Unmodified	_HEVTGLLSELP_					0	0	0			REV__ENSG00000076513|ENST00000261739|ANKRD13A	REV__ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-MATCH	HCT116MG_D190212_S1	1		3	398.883677	1193.6292	-0.15855	-6.3245E-05	0.013714	5.4701E-06	-0.14484	-5.7775E-05	398.883399633521	18.636	0.26039	18.636	18.402	18.662	0	-0.16495	3.8053E-05	NaN	14.218	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3605700	+		13910	10820	8317	8363							0.040133624693453385
HEVTVVLF	8	Unmodified	_HEVTVVLF_					0	0	0		DEPDC5|p.C416*|1|0.04|ENSG00000100150|chr22:31806152-31806152|T/-|frameshift_variant;nc|ENSG00000100150|O75140-2|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5	DEPDC5|p.C416*|1|0.04|ENSG00000100150|chr22:31806152-31806152|T/-|frameshift_variant	DEPDC5|p.C416*|1|0.04|ENSG00000100150|chr22:31806152-31806152|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.26678466796875	2	472.26601	942.517468	0.16827	7.9469E-05	0.9261	0.00043736	1.0944	0.00051683	472.266699740968	53.954	0.36127	53.764	53.48	53.842	-0.1894					9	6	2	0	0	0	0.43493	1	20789	20789		46.921	6.4723	1	21604000			13911	665	8318	8364	13355	13355					0.043909729028428046
HEWVIRSPAA	10	Unmodified	_HEWVIRSPAA_					0	0	0			REV__ENSG00000133250|ENST00000393927|ZNF414	REV__ENSG00000133250|ENST00000393927|ZNF414	MSMS	HCT116MG_D190212_S2	2	583.3199462890625	2	583.309272	1164.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.573	1	20.193	19.693	20.693	-0.37949								0	0	0	0.92272	1	7196	7196		10.824	0	1		+		13912	12024	8319	8365	13356	13356					0.028273524574160547
HEYPWILSA	9	Unmodified	_HEYPWILSA_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF;COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2803955078125	2	558.279649	1114.54475	0.37721	0.00021059	-0.097276	-5.4307E-05	0.27993	0.00015628	558.2797479964046	54.569	0.30598	54.379	54.201	54.507	-0.1894					9	5	2	0	0	0	0.042978	1	21030	21030		78.149	39.974	1	39860000			13913	2753	8320	8366	13357	13357					-0.007945435567535242
HEYPWILSA	9	Unmodified	_HEYPWILSA_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF;COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	HCT116MG_D190212_S3	3	558.27978515625	2	558.279649	1114.54475	0.36953	0.0002063	-0.16829	-9.3953E-05	0.20124	0.00011235	558.2794476944928	54.692	0.26144	54.396	54.243	54.504	-0.29587					7	4	2	0	0	0	0.23138	1	20751	20751		37.974	16.437	1	3236700			13914	2753	8320	8366	13358	13358					-0.007945435567535242
HEYSWPYKP	9	Unmodified	_HEYSWPYKP_					0	0	0		ENST00000528698.5_1_11:407426-409994:-|nuORF	ENST00000528698.5_1_11:407426-409994:-|nuORF	ENST00000528698.5_1_11:407426-409994:-|nuORF	MSMS	HCT116MG_D190212_S2	2	603.782958984375	2	603.782556	1205.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.868	1	37.775	37.275	38.275	-0.09301								0	0	0	0.35515	1	14209	14209		36.127	9.8589	1				13915	8605	8321	8367	13359	13359					-0.043994450451236844
HEYTTKEIF	9	Unmodified	_HEYTTKEIF_					0	0	0		TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant;ENSG00000198900|ENST00000361337|TOP1	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	584.286865234375	2	584.287671	1166.56079	0.67225	0.00039279	-0.24195	-0.00014137	0.43031	0.00025142	584.7888917889633	35.235	0.25768	35.235	35.114	35.371	0					9	4	3	0	0	0	0.026272	1	13117	13117		90.135	50.178	1	11657000			13916	6294	8322	8368	13360	13360					-0.015828821105287716
HEYTTKEIF	9	Unmodified	_HEYTTKEIF_					0	0	0		TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant;ENSG00000198900|ENST00000361337|TOP1	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	585.25	2	584.287671	1166.56079	0.46785	0.00027336	-0.75456	-0.00044088	-0.28671	-0.00016752	584.2873419121913	35.307	0.20051	35.165	35.036	35.237	-0.14245					5	3	2	0	0	0	0.2853	1	13134	13134		32.305	18.399	1	40667000			13917	6294	8322	8368	13361	13361					-0.015828821105287716
HEYTTKEVF	9	Unmodified	_HEYTTKEVF_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	HCT116MG_D190212_S1	1	577.2801513671875	2	577.279846	1152.54514	0.59085	0.00034108	0.24871	0.00014358	0.83956	0.00048466	577.2798295502442	30.721	0.26011	30.721	30.555	30.815	0					11	4	3	0	0	0	0.0055242	1	11288	11288		133.05	93.095	1	9436100			13918	5769	8323	8369	13362	13362					-0.025031686275724496
HEYTTKEVF	9	Unmodified	_HEYTTKEVF_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	HCT116MG_D190212_S2	2	577.27978515625	2	577.279846	1152.54514	0.39766	0.00022956	-0.18017	-0.00010401	0.21749	0.00012555	577.2797408477111	31.045	0.30995	30.778	30.612	30.922	-0.26704					12	5	4	0	0	0	0.012596	1	11450	11450		106.94	66.99	1	42401000			13919	5769	8323	8369	13363	13363					-0.025031686275724496
HFFSWNNY	8	Unmodified	_HFFSWNNY_					0	0	0		nc|ENSG00000123901|Q9NYM4-2|GPR83;ENSG00000123901|ENST00000243673|GPR83	nc|ENSG00000123901|Q9NYM4-2|GPR83	nc|ENSG00000123901|Q9NYM4-2|GPR83	MSMS	HCT116MG_D190212_S1	1	372.1639404296875	3	372.162886	1113.46683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.252	1	34.252	33.752	34.752	0								0	0	0	0.8837	1	12703	12703		1.8442	0	1				13920	2819	8324	8370	13364	13364					-0.08536556422154717
HFHRYNYYRLH	11	Unmodified	_HFHRYNYYRLH_					0	0	0			REV__ENST00000457379.1_1_2:50815958-50816216:-|nuORF	REV__ENST00000457379.1_1_2:50815958-50816216:-|nuORF	MSMS	HCT116MG_D190212_S2	2	803.3972778320312	2	803.394733	1604.77491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.874	1	45.773	45.273	46.273	-0.1014								0	0	0	0.95925	1	17458	17458		1.4819	1.1313	1		+		13921	15757	8325	8371	13365	13365					-0.0032831717126100557
HFLFRFVLFK	10	Unmodified	_HFLFRFVLFK_					0	0	0		ENST00000409371.7_1_4:6202075-6202225:-|nuORF	ENST00000409371.7_1_4:6202075-6202225:-|nuORF	ENST00000409371.7_1_4:6202075-6202225:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	677.8956909179688	2	677.395151	1352.77575	0.79751	0.00054023	0.29118	0.00019724	1.0887	0.00073747	677.3951732544979	52.768	3.2405	52.768	51.549	54.79	0					154	62	4	0	0	0	0.88823	1	19762	19762		1.4819	1.4819	1	770460000			13922	7725	8326	8372	13366	13366					0.11347129215710083
HFLRLIHFQLS	11	Unmodified	_HFLRLIHFQLS_					0	0	0			REV__ENSG00000173572|ENST00000342929|NLRP13	REV__ENSG00000173572|ENST00000342929|NLRP13	MULTI-SECPEP	HCT116MG_D190212_S1	1	470.6111145019531	3	470.93834	1409.79319	0.30739	0.00014476	2.2836	0.0010754	2.591	0.0012202	470.9391048390891	52.636	0.15394	52.636	52.536	52.69	0					4	2	2	0	0	0	0.36627	1	20124	20124		0.50596	0	1	5165300	+		13923	13444	8327	8373	13367	13367					0.10468424750752092
HFRKAKSIRA	10	Unmodified	_HFRKAKSIRA_					0	0	0		GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant;GPR158|p.K1143Rfs*23|1|0.32|ENSG00000151025|chr10:25599048-25599048|A/-|frameshift_variant;ENSG00000151025|ENST00000376351|GPR158	GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	405.24578857421875	3	405.247396	1212.72036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.003	1	48.638	48.138	49.138	-0.365								0	0	0	0.96769	1	18161	18161		0.77653	0.50751	1				13924	4100	8328	8374	13368	13368					0.12250715747995855
HFRLVQRLV	9	Unmodified	_HFRLVQRLV_					0	0	0		RBPJL|p.L171Q|1|0.32|ENSG00000124232|chr20:45312288-45312288|T/A|missense_variant	RBPJL|p.L171Q|1|0.32|ENSG00000124232|chr20:45312288-45312288|T/A|missense_variant	RBPJL|p.L171Q|1|0.32|ENSG00000124232|chr20:45312288-45312288|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	584.3606567382812	2	584.359099	1166.70365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.112	1	52.777	52.277	53.277	-0.33473								0	0	0	0.7696	1	19820	19820		2.3027	0	1				13925	9810	8329	8375	13369	13369					0.1269621486203505
HFRVGGGG	8	Unmodified	_HFRVGGGG_					0	0	0		ENST00000343376.8_1_19:10421250-10426607:-|nuORF	ENST00000343376.8_1_19:10421250-10426607:-|nuORF	ENST00000343376.8_1_19:10421250-10426607:-|nuORF	MSMS	HCT116MG_D190212_S2	2	393.70526123046875	2	393.703912	785.39327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.755	1	31.506	31.006	32.006	-0.24883								0	0	0	0.8837	1	11725	11725		2.8892	0	1				13926	7243	8330	8376	13370	13370					-0.00801060073933968
HFVKLVRASR	10	Unmodified	_HFVKLVRASR_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MSMS	HCT116MG_D190212_S4	4	607.2614135742188	2	606.869831	1211.72511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.923	1	52.583	52.083	53.083	-0.34023								0	0	0	0.96291	1	19744	19744		1.8442	0.19162	1				13927	3620	8331	8377	13371	13371					0.12771599890743346
HGAITSTA	8	Unmodified	_HGAITSTA_					0	0	0		ENSG00000266826|ENST00000583666|IGBP1C	ENSG00000266826|ENST00000583666|IGBP1C	ENSG00000266826|ENST00000583666|IGBP1C	MSMS	HCT116MG_D190212_S4	4	379.1961364746094	2	379.195585	756.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.58	1	42.204	41.704	42.704	-0.37565								0	0	0	0.8837	1	15655	15655		2.5775	0	1				13928	6647	8332	8378	13372	13372					-0.01131605750572362
HGAPLPTI	8	Unmodified	_HGAPLPTI_					0	0	0			REV__CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	REV__CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	403.2325744628906	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.015	1	3.9259	3.4259	4.4259	-0.089082								0	0	0	0.8837	1	1274	1274		0.79363	0	1		+		13929	10288	8333	8379	13373	13373					0.03934148042844754
HGCGKAGGG	9	Unmodified	_HGCGKAGGG_					0	0	0			REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	743.3248901367188	1	743.325333	742.318056	0.5083	0.00037783	-0.27217	-0.00020231	0.23613	0.00017552	743.325051670471	33.533	0.35859	33.243	33.049	33.408	-0.29013					9	6	2	0	0	0	0.76704	1	12313	12313		0.6015	0.6015	1	4522400	+		13930	14667	8334	8380	13374	13374					-0.06340985596693827
HGCGKAGGG	9	Unmodified	_HGCGKAGGG_					0	0	0			REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	743.325333	742.318056	1.3057	0.00097057	-1.0074	-0.00074884	0.29829	0.00022172	743.3245780506909	33.252	0.36128	33.059	32.914	33.276	-0.19297	-0.091916	-0.00046619	NaN	0.6015	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15930000	+		13931	14667	8334	8380							-0.06340985596693827
HGCGKAGGG	9	Unmodified	_HGCGKAGGG_					0	0	0			REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	743.325333	742.318056	0.5083	0.00037783	-0.27217	-0.00020231	0.23613	0.00017552	743.325051670471	33.533	0.35859	33.243	33.049	33.408	-0.29013	0.091916	8.0339E-05	NaN	0.6015	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4522400	+		13932	14667	8334	8380							-0.06340985596693827
HGCNECNTA	9	Unmodified	_HGCNECNTA_					0	0	0			REV__ENSG00000109917|ENST00000227322|ZPR1	REV__ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	HCT116MG_D190212_S2	2	474.6684265136719	2	474.668551	947.322549	0.12015	5.703E-05	-0.10402	-4.9377E-05	0.016122	7.6524E-06	474.6684034422657	14.33	0.99231	14.018	13.989	14.982	-0.31202					29	19	2	0	0	0	0.67781	1	4705	4705		6.7232	0.51738	1	57738000	+		13933	11384	8335	8381	13375	13375					-0.1532188923609965
HGEKGPQGKP	10	Unmodified	_HGEKGPQGKP_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;COL11A2|p.G956Wfs*11|1|0.1|ENSG00000204248|chr6:33171740-33171741|-/G|frameshift_variant;COL11A2|p.I664Rfs*5|1|0.25|ENSG00000204248|chr6:33176034-33176035|TA/-|frameshift_variant;COL11A2|p.P811Lfs*87|1|0.54|ENSG00000204248|chr6:33173394-33173394|G/-|frameshift_variant	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7728271484375	2	517.772522	1033.53049	0.27736	0.00014361	0.25578	0.00013243	0.53314	0.00027604	517.7726876193155	16.874	0.62465	16.533	16.1	16.725	-0.34183					27	11	3	0	0	0	0.59588	1	5597	5597		28.495	0.86571	1	55845000			13934	6324	8336	8382	13376	13376					0.015068040149799344
HGFLCWHPS	9	Unmodified	_HGFLCWHPS_					0	0	0		ENST00000218548.10_1_13:25283962-25284932:+|nuORF	ENST00000218548.10_1_13:25283962-25284932:+|nuORF	ENST00000218548.10_1_13:25283962-25284932:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	542.798583984375	2	542.245086	1082.47562	0.49298	0.00026731	2.3345	0.0012659	2.8275	0.0015332	542.2463459513887	34.232	0.46694	34.057	33.657	34.124	-0.17511					12	8	2	0	0	0	0.24195	1	12582	12582		7.9102	2.6133	1	11548000			13935	6745	8337	8383	13377	13377					-0.06231906057337255
HGFNFYCVYSY	11	Unmodified	_HGFNFYCVYSY_					0	0	0		ENST00000259075.6_2_2:162092566-162092674:+|nuORF	ENST00000259075.6_2_2:162092566-162092674:+|nuORF	ENST00000259075.6_2_2:162092566-162092674:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	699.8525390625	2	700.29243	1398.57031	0.87256	0.00061105	-0.89685	-0.00062806	-0.024296	-1.7014E-05	700.2918285684603	46.829	0.20767	46.458	46.328	46.536	-0.37134					8	3	3	0	0	0	0.35748	1	17296	17296		12.241	0	1	6013000			13936	6836	8338	8384	13378	13378					-0.1130343709664885
HGGAAAAP	8	Unmodified	_HGGAAAAP_					0	0	0		ENST00000481661.1_1_14:59931594-59931975:-|nuORF	ENST00000481661.1_1_14:59931594-59931975:-|nuORF	ENST00000481661.1_1_14:59931594-59931975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	651.3212280273438	1	651.320899	650.313623	0.63035	0.00041056	-0.055018	-3.5834E-05	0.57533	0.00037473	651.32087351858	52.775	0.30868	52.588	52.451	52.759	-0.18754					8	5	2	0	0	0	0.86388	1	20311	20311		2.8892	0	1	8234700			13937	8251	8339	8385	13379	13379					-0.025521267479575727
HGLHVLCP	8	Unmodified	_HGLHVLCP_					0	0	0			REV__ENST00000243253.7_1_3:127789169-127789619:+|nuORF	REV__ENST00000243253.7_1_3:127789169-127789619:+|nuORF	MSMS	HCT116MG_D190212_S2	2	438.2330627441406	2	438.231448	874.448342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.206	1	58.036	57.536	58.536	-0.1703								0	0	0	0.8837	1	22489	22489		2.8892	0	1		+		13938	14566	8340	8386	13380	13380					0.006096104022958571
HGMKNLGL	8	Unmodified	_HGMKNLGL_					0	0	0			REV__AHCYL1|p.N520Mfs*27|1|0.19|ENSG00000168710|chr1:110020820-110020820|A/-|frameshift_variant	REV__AHCYL1|p.N520Mfs*27|1|0.19|ENSG00000168710|chr1:110020820-110020820|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	435.2353820800781	2	435.23673	868.458907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.718	1	9.5083	9.0083	10.008	-0.20971								0	0	0	0.8837	1	2978	2978		0.79363	0	1		+		13939	9894	8341	8387	13381	13381					0.01941593056722013
HGPGVPAG	8	Unmodified	_HGPGVPAG_					0	0	0		ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	691.3521728515625	1	691.3522	690.344923	0.75317	0.0005207	-0.36436	-0.0002519	0.38881	0.0002688	691.3515769735832	19.992	0.20914	19.992	19.913	20.123	0					5	3	2	0	0	0	0.75115	1	6987	6987		17.087	0	1	2414500			13940	7765	8342	8388	13382	13382					-0.0126355371386353
HGPPIATL	8	Unmodified	_HGPPIATL_					0	0	0			REV__MFSD12|p.Q212Pfs*202|1|0.45|ENSG00000161091|chr19:3548144-3548145|-/C|frameshift_variant	REV__MFSD12|p.Q212Pfs*202|1|0.45|ENSG00000161091|chr19:3548144-3548145|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	403.23272705078125	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.75502	1	0.74876	0.24876	1.2488	-0.00626								0	0	0	0.8837	1	254	254		0.79363	0	1		+		13941	17024	8343	8389	13383	13383					0.03934148042867491
HGQQMYDL	8	Unmodified	_HGQQMYDL_					0	0	0			REV__SLFN14|p.V220Sfs*43|2|0.23|ENSG00000236320|chr17:35557406-35557406|T/-|frameshift_variant	REV__SLFN14|p.V220Sfs*43|2|0.23|ENSG00000236320|chr17:35557406-35557406|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	496.2178649902344	2	496.218734	990.422915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.343	1	11.061	10.561	11.561	-0.28186								0	0	0	0.8837	1	3649	3649		2.5775	0	1		+		13942	14334	8344	8390	13384	13384					-0.07267908910807819
HGSEPRPG	8	Unmodified	_HGSEPRPG_					0	0	0		ENST00000599256.5_1_19:18682749-18682926:+|nuORF	ENST00000599256.5_1_19:18682749-18682926:+|nuORF	ENST00000599256.5_1_19:18682749-18682926:+|nuORF	MSMS	HCT116MG_D190212_S1	1	418.7040100097656	2	418.704109	835.393664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.421	1	17.421	16.921	17.921	0								0	0	0	0.8396	1	5928	5928		19.439	2.4967	1				13943	9077	8345	8391	13385	13385					-0.03061685144768944
HGWAGTGK	8	Unmodified	_HGWAGTGK_					0	0	0		ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B	ENST00000486372.1_1_9:132565440-132566668:+|nuORF	ENST00000486372.1_1_9:132565440-132566668:+|nuORF	MSMS	HCT116MG_D190212_S2	2	407.2040100097656	2	407.203744	812.392936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.852	1	13.54	13.04	14.04	-0.31202								0	0	0	0.8837	1	4529	4529		0.69038	0	1				13944	3434	8346	8392	13386	13386					-0.02076479793811359
HHATCLSPTAP	11	Unmodified	_HHATCLSPTAP_					0	0	0			REV__ENST00000574946.5_1_17:6024711-6024984:+|nuORF	REV__ENST00000574946.5_1_17:6024711-6024984:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	379.2437744140625	3	378.850202	1133.52878	-0.19379	-7.3418E-05	-0.032998	-1.2501E-05	-0.22679	-8.592E-05	378.85021382557096	17.301	1.2015	16.951	16.873	18.075	-0.34933					31	22	2	0	0	0	0.73364	1	5896	5896		4.7159	4.7159	1	10507000	+		13945	16594	8347	8393	13387	13387					-0.032645730653030114
HHCCCCPCCH	10	Unmodified	_HHCCCCPCCH_					0	0	0		ENSG00000197191|ENST00000650725|CYSRT1	ENSG00000197191|ENST00000650725|CYSRT1	ENSG00000197191|ENST00000650725|CYSRT1	MSMS	HCT116MG_D190212_S1	1	573.1549682617188	2	573.154862	1144.29517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.745	1	28.745	28.245	29.245	0								0	0	0	0.97116	1	10480	10480		0	0	1				13946	6127	8348	8394	13388	13388					-0.27120478635652034
HHCFPSSH	8	Unmodified	_HHCFPSSH_					0	0	0		ENST00000448373.6_1_19:37068233-37068374:+|nuORF	ENST00000448373.6_1_19:37068233-37068374:+|nuORF	ENST00000448373.6_1_19:37068233-37068374:+|nuORF	MSMS	HCT116MG_D190212_S1	1	476.1982116699219	2	476.198136	950.381719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.7695	1	3.7695	3.2695	4.2695	0								0	0	0	0.8837	1	1134	1134		0.79363	0	1				13947	7968	8349	8395	13389	13389					-0.09545625159603333
HHDQDHGPNW	10	Unmodified	_HHDQDHGPNW_					0	0	0			REV__CEMIP|p.E181*|1|0.27|ENSG00000103888|chr15:80881052-80881053|-/T|frameshift_variant	REV__CEMIP|p.E181*|1|0.27|ENSG00000103888|chr15:80881052-80881053|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	414.8389892578125	3	414.839354	1241.49623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.035	1	12.035	11.535	12.535	0								0	0	0	0.97116	1	3835	3835		0	0	1		+		13948	10148	8350	8396	13390	13390					-0.11485644143954232
HHHALHEAP	9	Unmodified	_HHHALHEAP_					0	0	0		nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	MSMS	HCT116MG_D190212_S4	4	524.7566528320312	2	524.757207	1047.49986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.321	1	23.073	22.573	23.573	-0.24775								0	0	0	0.32721	1	8159	8159		38.151	0.17718	1				13949	4102	8351	8397	13391	13391					-0.021989295794355712
HHHQAVGQQG	10	Unmodified	_HHHQAVGQQG_					0	0	0			REV__nc|ENSG00000112137|Q9C0D0-2|PHACTR1	REV__nc|ENSG00000112137|Q9C0D0-2|PHACTR1	MULTI-MSMS	HCT116MG_D190212_S4	4	549.7628173828125	2	549.76302	1097.51149	0.060684	3.3362E-05	-0.38553	-0.00021195	-0.32485	-0.00017859	549.7626920159502	16.873	0.46738	16.706	16.4	16.867	-0.16664					15	8	2	0	0	0	0.77749	1	5502	5502		13.906	13.906	1	2144800	+		13950	11445	8352	8398	13392	13392					-0.0333673255611302
HHKRVLRDF	9	Unmodified	_HHKRVLRDF_					0	0	0			REV__ENSG00000068354|ENST00000376771|TBC1D25	REV__ENSG00000068354|ENST00000376771|TBC1D25	MSMS	HCT116MG_D190212_S2	2	403.2324523925781	3	403.231746	1206.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3551	1	2.3308	1.8308	2.8308	-0.024288								0	0	0	0.77019	1	769	769		0.23584	0.076522	1		+		13951	10736	8353	8399	13393	13393					0.07833856196839406
HHLAQVVPPSG	11	Unmodified	_HHLAQVVPPSG_					0	0	0			REV__ENST00000229405.8_1_6:35262493-35262685:+|nuORF	REV__ENST00000229405.8_1_6:35262493-35262685:+|nuORF	MSMS	HCT116MG_D190212_S3	3	571.3082885742188	2	571.309272	1140.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.914	1	42.61	42.11	43.11	-0.30472								0	0	0	0.9387	1	16001	16001		12.241	0	1		+		13952	14543	8354	8400	13394	13394					0.03931352457425419
HHPRHLRCGHL	11	Unmodified	_HHPRHLRCGHL_					0	0	0			REV__ENST00000266643.5_1_12:58150815-58152358:+|nuORF	REV__ENST00000266643.5_1_12:58150815-58152358:+|nuORF	MSMS	HCT116MG_D190212_S1	1	681.8554077148438	2	681.857264	1361.69997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.84	1	38.84	38.34	39.34	0								0	0	0	0.95113	1	14553	14553		5.7319	0.43497	1		+		13953	14679	8355	8401	13395	13395					0.033592218165267695
HHRRGLLLA	9	Unmodified	_HHRRGLLLA_					0	0	0			REV__nc|ENSG00000100036|Q6ICL7-2|SLC35E4	REV__nc|ENSG00000100036|Q6ICL7-2|SLC35E4	MSMS	HCT116MG_D190212_S4	4	358.2223205566406	3	358.22107	1071.64138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.893	1	56.593	56.093	57.093	-0.3004								0	0	0	0.77018	1	21340	21340		0.26902	0.033176	1		+		13954	11060	8356	8402	13396	13396					0.10842488513731041
HHRYQRSWYWR	11	Unmodified	_HHRYQRSWYWR_					0	0	0		ENST00000490882.5_1_3:58107073-58108965:+|nuORF	ENST00000490882.5_1_3:58107073-58108965:+|nuORF	ENST00000490882.5_1_3:58107073-58108965:+|nuORF	MSMS	HCT116MG_D190212_S4	4	559.2798461914062	3	558.943147	1673.80761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.7	1	41.324	40.824	41.824	-0.37637								0	0	0	0.9619	1	15301	15301		0.094841	0.011491	1				13955	8337	8357	8403	13397	13397					-0.0023411004840454552
HHTLSSPSGP	10	Unmodified	_HHTLSSPSGP_					0	0	0			REV__ENSG00000272333|ENST00000420124|KMT2B	REV__ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	HCT116MG_D190212_S4	4	510.77069091796875	2	510.24888	1018.48321	0.048362	2.4677E-05	0.033805	1.7249E-05	0.082167	4.1926E-05	510.24887908452206	18.204	0.62122	18.029	17.532	18.153	-0.17501					15	11	2	0	0	0	0.28496	1	6122	6122		13.906	0	1	1034200	+		13956	14442	8358	8404	13398	13398					-0.025294752560398592
HIAIEGEK	8	Unmodified	_HIAIEGEK_					0	0	0			REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	REV__HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	448.7455139160156	2	448.745442	895.476331	0.13809	6.1966E-05	-0.02515	-1.1286E-05	0.11294	5.068E-05	448.74538373391795	19.231	0.20817	18.862	18.732	18.94	-0.3695					6	3	2	0	0	0	0.3916	1	6665	6665		50.855	3.1063	1	11224000	+		13957	11013	8359	8405	13399	13399					0.02441211863379067
HIDDDSKF	8	Unmodified	_HIDDDSKF_					0	0	0			REV__nc|ENSG00000156795|Q96HA8-2|NTAQ1	REV__nc|ENSG00000156795|Q96HA8-2|NTAQ1	MULTI-MSMS	HCT116MG_D190212_S2	2	489.74822998046875	2	488.722164	975.429775	0.47008	0.00022974	0.2141	0.00010464	0.68419	0.00033438	488.72223008742407	27.455	0.51594	27.113	26.933	27.449	-0.34201					26	9	4	0	0	0	0.77285	1	10030	10030		14.582	0	1	286500000	+		13958	12731	8360	8406	13400	13400					-0.05892272758569561
HIDEQSGKEKY	11	Unmodified	_HIDEQSGKEKY_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	HCT116MG_D190212_S1	1	667.3229370117188	2	667.322773	1332.63099	0.70766	0.00047224	-0.13152	-8.7767E-05	0.57614	0.00038447	667.3225500183474	16.551	0.26026	16.551	16.421	16.681	0					8	4	3	0	0	0	0.061555	2	5601	5576;5601		96.24	68.611	1	12283000			13959	4029	8361	8407	13401;13402	13402					-0.022016285126937873
HIDEQSGKEKY	11	Unmodified	_HIDEQSGKEKY_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	HCT116MG_D190212_S1	1	445.21728515625	3	445.217608	1332.63099	0.046034	2.0495E-05	0.073908	3.2905E-05	0.11994	5.34E-05	445.2176186717262	16.551	0.31226	16.551	16.421	16.733	0					11	5	3	0	0	0	6.1194E-11	1	5582	5582		185.9	143.04	1	16575000			13960	4029	8361	8407	13403	13403					-0.022016285126937873
HIDEQSGKEKY	11	Unmodified	_HIDEQSGKEKY_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	HCT116MG_D190212_S2	2	667.3236083984375	2	667.322773	1332.63099	0.39774	0.00026542	0.26931	0.00017972	0.66706	0.00044514	667.3229847662035	17.144	0.26052	16.795	16.665	16.925	-0.34933					10	4	3	0	0	0	6.1194E-11	1	5829	5829		214.54	160.74	1	50922000			13961	4029	8361	8407	13404	13404					-0.022016285126937873
HIDEQSGKEKY	11	Unmodified	_HIDEQSGKEKY_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	HCT116MG_D190212_S2	2	444.7301330566406	3	445.217608	1332.63099	0.19006	8.4616E-05	-0.25467	-0.00011338	-0.064616	-2.8768E-05	445.2174772283092	17.144	0.31281	16.795	16.665	16.978	-0.34933					11	5	3	0	0	0	0.36272	1	5851	5851		14.838	14.838	1	32733000			13962	4029	8361	8407	13405	13405					-0.022016285126937873
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(120)Y	0	0	1		nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	nc|ENSG00000134504|Q719H9|KCTD1	nc|ENSG00000134504|Q719H9|KCTD1	MULTI-MSMS	HCT116MG_D190212_S1	1	522.7322387695312	2	522.732009	1043.44946	0.65102	0.00034031	-0.41638	-0.00021766	0.23464	0.00012265	522.7318805795275	28.402	0.21327	28.402	28.268	28.482	0					5	3	2	0	0	0	0.0082751	1	10371	10371		117.6	83.411	1	13693000			13963	3288	8362	8408	13406	13406		79			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(130)Y	0	0	1		nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	nc|ENSG00000134504|Q719H9|KCTD1	nc|ENSG00000134504|Q719H9|KCTD1	MSMS	HCT116MG_D190212_S1	1	522.732177734375	2	522.732009	1043.44946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.146	1	29.146	28.646	29.646	0								0	0	0	0.00013775	1	10641	10641		131.3	84.377	1				13964	3288	8362	8408	13407	13407		79			-0.0705222001945458
HIDVGGHMY	9	Unmodified	_HIDVGGHMY_					0	0	0		nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	nc|ENSG00000134504|Q719H9|KCTD1	nc|ENSG00000134504|Q719H9|KCTD1	MULTI-MSMS	HCT116MG_D190212_S1	1	514.73486328125	2	514.734551	1027.45455	0.38316	0.00019723	0.15117	7.7814E-05	0.53433	0.00027504	514.7345439082585	32.613	0.31238	32.613	32.43	32.742	0					13	5	3	0	0	0	0.0034366	1	12035	12035		179.23	125.65	1	104170000			13965	3288	8362	8409	13408	13408					-0.05807916156823012
HIDVGGHMY	9	Unmodified	_HIDVGGHMY_					0	0	0		nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;ENSG00000153885|ENST00000683859|KCTD15	nc|ENSG00000134504|Q719H9|KCTD1	nc|ENSG00000134504|Q719H9|KCTD1	MULTI-MSMS	HCT116MG_D190212_S2	2	514.7348022460938	2	514.734551	1027.45455	0.30694	0.00015799	0.43058	0.00022164	0.73752	0.00037963	514.7346389694643	32.823	0.31087	32.611	32.377	32.688	-0.21135					15	5	4	0	0	0	0.0034366	1	12146	12146		179.23	125.65	1	166090000			13966	3288	8362	8409	13409	13409					-0.05807916156823012
HIEALFTA	8	Unmodified	_HIEALFTA_					0	0	0			REV__ENST00000454079.5_1_3:50004874-50005063:+|nuORF	REV__ENST00000454079.5_1_3:50004874-50005063:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	451.2416687011719	2	451.242535	900.470518	0.076696	3.4609E-05	-0.31992	-0.00014436	-0.24323	-0.00010975	451.2423328427567	43.969	0.3078	43.891	43.762	44.069	-0.078373					9	5	2	0	0	0	0.15838	1	16714	16714		81.864	14.52	1	19431000	+		13967	15730	8363	8410	13410	13410					0.016301133517117705
HIIENIVAV	9	Unmodified	_HIIENIVAV_					0	0	0		nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;RSL1D1|p.K240Nfs*9|1|0.37|ENSG00000171490|chr16:11841916-11841916|T/-|frameshift_variant	nc|ENSG00000171490|O76021-2|RSL1D1	nc|ENSG00000171490|O76021-2|RSL1D1	MULTI-MSMS	HCT116MG_D190212_S1	1	504.297607421875	2	504.297842	1006.58113	0.33396	0.00016841	0.32798	0.0001654	0.66194	0.00033382	504.297869713138	44.906	0.46689	44.906	44.673	45.139	0					10	8	2	0	0	0	0.027492	1	17025	17025		88.904	30.225	1	52771000			13968	5198	8364	8411	13411	13411					0.07810333339944009
HIIENIVAV	9	Unmodified	_HIIENIVAV_					0	0	0		nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;RSL1D1|p.K240Nfs*9|1|0.37|ENSG00000171490|chr16:11841916-11841916|T/-|frameshift_variant	nc|ENSG00000171490|O76021-2|RSL1D1	nc|ENSG00000171490|O76021-2|RSL1D1	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7991638183594	2	504.297842	1006.58113	0.61953	0.00031243	0.082624	4.1667E-05	0.70215	0.0003541	504.29785622703093	45.01	0.46909	44.917	44.632	45.101	-0.092472					13	8	2	0	0	0	0.0063744	1	17101	17101		125.62	47.475	1	128160000			13969	5198	8364	8411	13412	13412					0.07810333339944009
HIIENIVAV	9	Unmodified	_HIIENIVAV_					0	0	0		nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;RSL1D1|p.K240Nfs*9|1|0.37|ENSG00000171490|chr16:11841916-11841916|T/-|frameshift_variant	nc|ENSG00000171490|O76021-2|RSL1D1	nc|ENSG00000171490|O76021-2|RSL1D1	MULTI-MSMS	HCT116MG_D190212_S2	2	1007.589111328125	1	1007.58841	1006.58113	0.75197	0.00075768	0.30143	0.00030371	1.0534	0.0010614	1007.5884381053688	44.995	0.20939	44.902	44.787	44.996	-0.092472					6	3	2	0	0	0	0.016134	1	17113	17113		100.37	25.442	1	18087000			13970	5198	8364	8411	13413	13413					0.07810333339944009
HIILHSKKS	9	Unmodified	_HIILHSKKS_					0	0	0			REV__ZFP37|p.R481I|1|0.12|ENSG00000136866|chr9:113043176-113043176|C/A|missense_variant	REV__ZFP37|p.R481I|1|0.12|ENSG00000136866|chr9:113043176-113043176|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	532.24658203125	2	531.824558	1061.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.658	1	39.58	39.08	40.08	-0.077835								0	0	0	0.60272	1	14933	14933		25.399	0	1		+		13971	12146	8365	8412	13414	13414					0.10621130842469029
HIKKKRVEAI	10	Unmodified	_HIKKKRVEAI_					0	0	0		TGFB3|p.N142Ifs*72|1|0.22|ENSG00000119699|chr14:75971646-75971646|T/-|frameshift_variant;nc|ENSG00000119699|P10600-2|TGFB3;TGFB3|p.G295Vfs*74|1|0.28|ENSG00000119699|chr14:75963358-75963358|C/-|frameshift_variant;ENSG00000119699|ENST00000238682|TGFB3	TGFB3|p.N142Ifs*72|1|0.22|ENSG00000119699|chr14:75971646-75971646|T/-|frameshift_variant	TGFB3|p.N142Ifs*72|1|0.22|ENSG00000119699|chr14:75971646-75971646|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	407.932861328125	3	407.931185	1220.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.012	1	10.012	9.5121	10.512	0								0	0	0	0.97045	1	3053	3053		0.15932	0	1				13972	2660	8366	8413	13415	13415					0.17017039722054506
HIKMHKRILGH	11	Unmodified	_HIKMHKRILGH_					0	0	0		BRWD3|p.A1140Lfs*42|2|0.13|ENSG00000165288|chrX:80691886-80691886|C/-|frameshift_variant;BRWD3|p.F1372Qfs*6|1|0.03|ENSG00000165288|chrX:80684129-80684130|-/AATTG|frameshift_variant;nc|ENSG00000165288|Q6RI45-5|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000478415.1_1_X:79999455-80064970:-|nuORF;BRWD3|p.I453Rfs*18|1|0.03|ENSG00000165288|chrX:80728782-80728783|-/TACTATACTAGTCCTT|frameshift_variant;BRWD3|p.F540Lfs*91|1|0.67|ENSG00000165288|chrX:80723778-80723778|A/-|frameshift_variant	BRWD3|p.A1140Lfs*42|2|0.13|ENSG00000165288|chrX:80691886-80691886|C/-|frameshift_variant	BRWD3|p.A1140Lfs*42|2|0.13|ENSG00000165288|chrX:80691886-80691886|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	685.6619873046875	2	685.403515	1368.79248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.164	1	39.087	38.587	39.587	-0.077835								0	0	0	0.94924	1	14732	14732		6.7232	0	1				13973	282	8367	8414	13416	13416					0.12283306830045149
HIKRHYHKKFW	11	Unmodified	_HIKRHYHKKFW_					0	0	0		nc|ENSG00000115339|Q14435-2|GALNT3;ENSG00000115339|ENST00000392701|GALNT3	nc|ENSG00000115339|Q14435-2|GALNT3	nc|ENSG00000115339|Q14435-2|GALNT3	MSMS	HCT116MG_D190212_S2	2	790.4449462890625	2	790.441486	1578.86842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.142	1	31.912	31.412	32.412	-0.23009								0	0	0	0.95925	1	11883	11883		1.4819	0.15237	1				13974	2462	8368	8415	13417	13417					0.10214027001802606
HILDSQTVVLK	11	Unmodified	_HILDSQTVVLK_					0	0	0		KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant;nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;KIF20B|p.N445*|1|0.1|ENSG00000138182|chr10:89718763-89718764|-/T|frameshift_variant;KIF20B|p.F444Lfs*9|1|0.09|ENSG00000138182|chr10:89718764-89718764|T/-|frameshift_variant;KIF20B|p.K592Rfs*4|1|0.37|ENSG00000138182|chr10:89724010-89724010|A/-|frameshift_variant;KIF20B|p.N1214Tfs*5|1|0.15|ENSG00000138182|chr10:89738478-89738478|A/-|frameshift_variant	KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant	KIF20B|p.R1552Gfs*9|1|0.39|ENSG00000138182|chr10:89758852-89758852|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	626.86767578125	2	626.86662	1251.71869	0.71047	0.00044537	0.59102	0.00037049	1.3015	0.00081587	626.8665210882804	36.328	0.20744	36.2	36.071	36.278	-0.12799					6	3	2	0	0	0	0.62633	1	13611	13611		46.022	7.4076	1	20433000			13975	3540	8369	8416	13418	13418					0.1028961714871457
HIMPPQQHY	9	Unmodified	_HIMPPQQHY_					0	0	0		CBLL1|p.P420Lfs*20|1|0.4|ENSG00000105879|chr7:107758957-107758957|C/-|frameshift_variant;nc|ENSG00000105879|Q75N03-2|CBLL1;ENSG00000105879|ENST00000440859|CBLL1	CBLL1|p.P420Lfs*20|1|0.4|ENSG00000105879|chr7:107758957-107758957|C/-|frameshift_variant	CBLL1|p.P420Lfs*20|1|0.4|ENSG00000105879|chr7:107758957-107758957|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	575.6913452148438	2	575.776751	1149.53895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.267	1	38.174	37.674	38.674	-0.09301								0	0	0	0.76781	1	14371	14371		8.5933	1.304	1				13976	338	8370	8417	13419	13419					-0.02983965340058603
HIMPTVHTV	9	Unmodified	_HIMPTVHTV_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	517.776611328125	2	517.776219	1033.53789	0.43778	0.00022667	-0.033783	-1.7492E-05	0.40399	0.00020918	517.7762720059504	30.425	0.25919	30.425	30.244	30.503	0					7	4	2	0	0	0	0.0047811	1	11170	11170		139.54	97.449	1	2606800			13977	65	8371	8418	13420	13420					0.022458202910002
HIMPTVHTV	9	Unmodified	_HIMPTVHTV_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	517.7764282226562	2	517.776219	1033.53789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.881	1	30.614	30.114	31.114	-0.26704								0	0	0	6.938E-08	1	11371	11371		156.16	112.3	1				13978	65	8371	8418	13421	13421					0.022458202910002
HINDSAPEV	9	Unmodified	_HINDSAPEV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	HCT116MG_D190212_S1	1	491.2353820800781	2	491.235439	980.456324	0.29857	0.00014667	-0.38029	-0.00018681	-0.08172	-4.0144E-05	491.23519521288176	26.839	0.20857	26.839	26.709	26.918	0					6	3	2	0	0	0	0.066823	1	9732	9732		66.457	26.507	1	5121800			13979	469	8372	8419	13422	13422					-0.034685838672317004
HINDSAPEV	9	Unmodified	_HINDSAPEV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	HCT116MG_D190212_S2	2	491.2356872558594	2	491.235439	980.456324	0.46569	0.00022876	0.12705	6.2411E-05	0.59274	0.00029117	491.23547829160304	27.262	0.26188	26.91	26.713	26.975	-0.35254					8	4	2	0	0	0	0.061422	1	9909	9909		69.105	25.247	1	13607000			13980	469	8372	8419	13423	13423					-0.034685838672317004
HINSVAEVNP	10	Unmodified	_HINSVAEVNP_					0	0	0			REV__ENSG00000160991|ENST00000495936|ORAI2	REV__ENSG00000160991|ENST00000495936|ORAI2	MSMS	HCT116MG_D190212_S1	1	540.2774658203125	2	540.277638	1078.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.967	1	31.967	31.467	32.467	0								0	0	0	0.92272	1	11780	11780		10.824	1.4765	1		+		13981	12849	8373	8420	13424	13424					0.004593669495079666
HIRFKLAPP	9	Unmodified	_HIRFKLAPP_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.Q968Sfs*46|1|0.27|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant;KANSL1|p.G179Efs*23|2|0.22|ENSG00000120071|chr17:46171608-46171608|C/-|frameshift_variant;KANSL1|p.G204Vfs*2|2|0.24|ENSG00000120071|chr17:46171533-46171533|C/-|frameshift_variant;KANSL1|p.K267Sfs*12|1|0.22|ENSG00000120071|chr17:46171344-46171344|T/-|frameshift_variant;KANSL1|p.G260Vfs*19|5|0.26|ENSG00000120071|chr17:46171365-46171365|C/-|frameshift_variant;KANSL1|p.K437Nfs*43|1|0.37|ENSG00000120071|chr17:46094680-46094680|T/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MSMS	HCT116MG_D190212_S1	1	360.22259521484375	3	360.222188	1077.64473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.509	1	23.509	23.009	24.009	0								0	0	0	0.76991	1	8375	8375		1.1933	0.735	1				13982	2683	8374	8421	13425	13425					0.109017385676907
HIRIKHLELP	10	Unmodified	_HIRIKHLELP_					0	0	0			REV__ENSG00000248383|ENST00000253807|PCDHAC1	REV__ENSG00000248383|ENST00000253807|PCDHAC1	MSMS	HCT116MG_D190212_S1	1	628.3831787109375	2	628.385314	1254.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.995	1	51.995	51.495	52.495	0								0	0	0	0.95507	1	19877	19877		3.5965	0.31518	1		+		13983	14371	8375	8422	13426	13426					0.13888753204969362
HIRTCQKY	8	Unmodified	_HIRTCQKY_					0	0	0		ENST00000583184.1_1_18:29598826-29691722:+|nuORF;ENSG00000101695|ENST00000217740|RNF125	ENST00000583184.1_1_18:29598826-29691722:+|nuORF	ENST00000583184.1_1_18:29598826-29691722:+|nuORF	MSMS	HCT116MG_D190212_S4	4	350.1820983886719	3	350.183404	1047.52838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.303	1	33.918	33.418	34.418	-0.38558								0	0	0	0.8837	1	12520	12520		11.64	0.84079	1				13984	1804	8376	8423	13427	13427					0.006520520054891676
HISIKVFKLPL	11	Unmodified	_HISIKVFKLPL_					0	0	0			REV__FAM71B|p.N320Kfs*6|1|0.4|ENSG00000170613|chr5:157163305-157163306|-/T|frameshift_variant	REV__FAM71B|p.N320Kfs*6|1|0.4|ENSG00000170613|chr5:157163305-157163306|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.2803649902344	3	432.279703	1293.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.971	1	47.655	47.155	48.155	-0.31596								0	0	0	0.96111	1	18029	18029		0.50596	0	1		+		13985	13310	8377	8424	13428	13428					0.18212265184433818
HIVKKIETEN	10	Unmodified	_HIVKKIETEN_					0	0	0		REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;REV1|p.M392*|1|0.28|ENSG00000135945|chr2:99438640-99438640|T/-|frameshift_variant;nc|ENSG00000135945|Q9UBZ9-3|REV1;REV1|p.M392Nfs*12|1|0.38|ENSG00000135945|chr2:99438639-99438640|-/T|frameshift_variant	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	605.84130859375	2	605.843145	1209.67174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.427	1	53.092	52.592	53.592	-0.33473								0	0	0	0.94339	1	19947	19947		6.2058	2.2614	1				13986	3385	8378	8425	13429	13429					0.07528757597583535
HIVLEGEE	8	Unmodified	_HIVLEGEE_					0	0	0		tr|U7SM61|U7SM61_FUSNUYhcH/YjgK/YiaLfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02093PE=4SV=1	tr|U7SM61|U7SM61_FUSNUYhcH/YjgK/YiaLfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02093PE=4SV=1	tr|U7SM61|U7SM61_FUSNUYhcH/YjgK/YiaLfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02093PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	463.23492431640625	2	463.234907	924.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.323	1	38.942	38.442	39.442	-0.38055								0	0	0	0.8837	1	14444	14444		2.8892	0	1				13987	18347	8379	8426	13430	13430					-0.009987982361394643
HIVQPQQII	9	Unmodified	_HIVQPQQII_					0	0	0			REV__nc|ENSG00000124429|Q8WVV4-3|POF1B	REV__nc|ENSG00000124429|Q8WVV4-3|POF1B	MULTI-MSMS	HCT116MG_D190212_S1	1	359.54803466796875	3	359.213469	1074.61858	-0.014758	-5.3014E-06	0.06344	2.2788E-05	0.048681	1.7487E-05	359.21331505624437	24.751	0.26163	24.751	24.621	24.882	0					8	4	3	0	0	0	0.65277	1	8902	8902		8.1555	1.5252	1	10695000	+		13988	11785	8380	8427	13431	13431					0.08425424605570697
HIWTWKRDERY	11	Unmodified	_HIWTWKRDERY_					0	0	0		MMP21|p.S449Kfs*9|1|0.13|ENSG00000154485|chr10:125767596-125767597|-/T|frameshift_variant;ENSG00000154485|ENST00000368808|MMP21	MMP21|p.S449Kfs*9|1|0.13|ENSG00000154485|chr10:125767596-125767597|-/T|frameshift_variant	MMP21|p.S449Kfs*9|1|0.13|ENSG00000154485|chr10:125767596-125767597|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	795.4005126953125	2	795.402224	1588.78989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.935	1	17.019	16.519	17.519	0.084467								0	0	0	0.96024	1	5655	5655		0.96228	0.65524	1				13989	4221	8381	8428	13432	13432					0.01905129906072034
HKDEQIEKA	9	Unmodified	_HKDEQIEKA_					0	0	0			REV__ENSG00000169126|ENST00000305242|ODAD2	REV__ENSG00000169126|ENST00000305242|ODAD2	MULTI-MSMS	HCT116MG_D190212_S3	3	549.2852172851562	2	549.28292	1096.55129	0.48005	0.00026368	2.3988	0.0013176	2.8789	0.0015813	549.2847079072081	43.667	0.26084	43.36	43.24	43.5	-0.30616					7	4	2	0	0	0	0.51301	1	16341	16341		16.149	0.90062	1	2993300	+		13990	13223	8382	8429	13433	13433					0.006873496039588645
HKDEQIEKA	9	Unmodified	_HKDEQIEKA_					0	0	0			REV__ENSG00000169126|ENST00000305242|ODAD2	REV__ENSG00000169126|ENST00000305242|ODAD2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	549.28292	1096.55129	0.39206	0.00021535	3.0194	0.0016585	3.4114	0.0018738	549.2846876036626	43.472	0.20684	43.399	43.303	43.51	-0.073372	-0.0093461	0.00037185	NaN	16.149	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10986000	+		13991	13223	8382	8429							0.006873496039588645
HKDEQIEKA	9	Unmodified	_HKDEQIEKA_					0	0	0			REV__ENSG00000169126|ENST00000305242|ODAD2	REV__ENSG00000169126|ENST00000305242|ODAD2	MULTI-MATCH	HCT116MG_D190212_S4	4		2	549.28292	1096.55129	0.5344	0.00029354	2.0002	0.0010987	2.5346	0.0013922	549.2848360204878	43.839	0.20361	43.465	43.315	43.519	-0.37433	0.05694	-0.00074773	NaN	16.149	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1122900	+		13992	13223	8382	8429							0.006873496039588645
HKEKLWFVP	9	Unmodified	_HKEKLWFVP_					0	0	0		ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	MSMS	HCT116MG_D190212_S4	4	395.2271423339844	3	395.225598	1182.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.09	1	38.709	38.209	39.209	-0.38055								0	0	0	0.76973	1	14351	14351		0.96228	0	1				13993	2476	8383	8430	13434	13434					0.07094301502274902
HKENIITKLF	10	Unmodified	_HKENIITKLF_					0	0	0		nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-5|EFCAB6;nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF;EFCAB6|p.S719Vfs*3|1|0.34|ENSG00000186976|chr22:43632182-43632182|T/-|frameshift_variant	nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	MSMS	HCT116MG_D190212_S2	2	621.863037109375	2	621.86388	1241.71321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.657	1	28.33	27.83	28.83	-0.32607								0	0	0	0.94339	1	10462	10462		6.2058	1.8765	1				13994	5921	8384	8431	13435	13435					0.10201938356885876
HKKAVSRIQIF	11	Unmodified	_HKKAVSRIQIF_					0	0	0			REV__F8|p.N982Mfs*22|1|0.31|ENSG00000185010|chrX:154930845-154930845|T/-|frameshift_variant	REV__F8|p.N982Mfs*22|1|0.31|ENSG00000185010|chrX:154930845-154930845|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	663.906005859375	2	663.903871	1325.79319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.737	1	55.552	55.052	56.052	-0.18565								0	0	0	0.95273	1	21492	21492		4.897	1.9018	1		+		13995	13820	8385	8432	13436	13436					0.1433242475075076
HKKIPVGF	8	Unmodified	_HKKIPVGF_					0	0	0			REV__ENST00000407347.2_1_6:18367150-18368330:-|nuORF	REV__ENST00000407347.2_1_6:18367150-18368330:-|nuORF	MSMS	HCT116MG_D190212_S4	4	463.2838439941406	2	463.284537	924.554522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.438	1	52.098	51.598	52.598	-0.34023								0	0	0	0.8837	1	19548	19548		2.8892	0	1		+		13996	15419	8386	8433	13437	13437					0.0892268923927304
HKKITAQIKF	10	Unmodified	_HKKITAQIKF_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MSMS	HCT116MG_D190212_S4	4	607.546142578125	2	607.374415	1212.73428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.813	1	51.465	50.965	51.965	-0.34779								0	0	0	0.95507	1	19295	19295		3.5965	0	1				13997	3527	8387	8434	13438	13438					0.136419484563703
HKKKERKLRW	10	Unmodified	_HKKKERKLRW_					0	0	0			REV__ENST00000496972.6_1_2:25600096-25600174:-|nuORF	REV__ENST00000496972.6_1_2:25600096-25600174:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	704.9338989257812	2	704.936037	1407.85752	0.93725	0.0006607	-2.2066	-0.0015555	-1.2694	-0.00089484	704.9340579896576	59.544	0.30428	59.384	59.285	59.589	-0.16012					11	6	2	0	0	0	0.89272	1	23035	23035		0.40072	0.050084	1	12534000	+		13998	16095	8388	8435	13439	13439					0.1699062462753318
HKKKKIKVK	9	Unmodified	_HKKKKIKVK_					0	0	0			REV__TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	REV__TGS1|p.G559Rfs*2|1|0.17|ENSG00000137574|chr8:55799039-55799040|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	568.8810424804688	2	568.903143	1135.79173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.682	1	28.363	27.863	28.863	-0.3192								0	0	0	0.7701	1	10473	10473		0.52476	0.52476	1		+		13999	12181	8389	8436	13440	13440					0.22926835452631167
HKKKKKKKIKK	11	Unmodified	_HKKKKKKKIKK_					0	0	0			REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MSMS	HCT116MG_D190212_S3	3	711.5125122070312	2	711.51138	1421.00821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.291	1	52.988	52.488	53.488	-0.30305								0	0	0	0.95954	1	20166	20166		1.3295	1.0225	1		+		14000	10873	8390	8437	13441	13441					0.314543912863428
HKKPFIAINL	10	Unmodified	_HKKPFIAINL_					0	0	0			REV__ENST00000503937.5_1_4:83740135-83740261:-|nuORF	REV__ENST00000503937.5_1_4:83740135-83740261:-|nuORF	MSMS	HCT116MG_D190212_S3	3	394.2431945800781	3	394.244881	1179.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.431	1	58.162	57.662	58.662	-0.26932								0	0	0	0.96263	1	22228	22228		1.9064	1.1298	1		+		14001	16128	8391	8438	13442	13442					0.13014563427714165
HKLPALTLKH	10	Unmodified	_HKLPALTLKH_					0	0	0			REV__ENST00000551739.5_1_12:56332068-56333318:+|nuORF	REV__ENST00000551739.5_1_12:56332068-56333318:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	579.3616943359375	2	579.361308	1156.70806	0.39449	0.00022855	0.2384	0.00013812	0.63289	0.00036667	579.3613648466658	61.62	1.2982	61.62	61.21	62.508	0					39	24	2	0	0	0	0.87945	1	23745	23745		3.5965	1.5367	1	6709600	+		14002	16424	8392	8439	13443	13443					0.13597679284930564
HKLPALTLKH	10	Unmodified	_HKLPALTLKH_					0	0	0			REV__ENST00000551739.5_1_12:56332068-56333318:+|nuORF	REV__ENST00000551739.5_1_12:56332068-56333318:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	579.0394897460938	2	579.361308	1156.70806	0.39449	0.00022855	0.2384	0.00013812	0.63289	0.00036667	579.3613648466658	61.62	1.2982	61.62	61.21	62.508	0					39	24	2	0	0	0	0.31123	1	23688	23688		3.5965	3.5965	1	6709600	+		14003	16424	8392	8439	13444	13444					0.13597679284930564
HKMKSLSL	8	Unmodified	_HKMKSLSL_					0	0	0		ENST00000428135.7_1_7:17831871-17832039:-|nuORF	ENST00000428135.7_1_7:17831871-17832039:-|nuORF	ENST00000428135.7_1_7:17831871-17832039:-|nuORF	MSMS	HCT116MG_D190212_S3	3	472.2752990722656	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.985	1	58.721	58.221	59.221	-0.26405								0	0	0	0.8837	1	22451	22451		2.5775	0	1				14004	7828	8393	8440	13445	13445					0.058507217793589916
HKPVSDKL	8	Unmodified	_HKPVSDKL_					0	0	0		PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant;ENSG00000120278|ENST00000696526|PLEKHG1	PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	PLEKHG1|p.S974Afs*5|1|0.07|ENSG00000120278|chr6:150832027-150832027|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	462.2698974609375	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.179	1	58.179	57.679	58.679	0								0	0	0	0.8837	1	22404	22404		2.5775	0.51773	1				14005	2693	8394	8441	13446	13446					0.0592549113438281
HKRERLRNR	9	Unmodified	_HKRERLRNR_					0	0	0		LUZP1|p.P479Rfs*22|2|0.4|ENSG00000169641|chr1:23092826-23092826|G/-|frameshift_variant;LUZP1|p.V674Gfs*16|1|0.33|ENSG00000169641|chr1:23092241-23092242|-/C|frameshift_variant;LUZP1|p.F744Lfs*22|1|0.36|ENSG00000169641|chr1:23092030-23092030|A/-|frameshift_variant;LUZP1|p.T938Nfs*5|1|0.29|ENSG00000169641|chr1:23091451-23091452|-/G|frameshift_variant;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1;ENSG00000169641|ENST00000302291|LUZP1	LUZP1|p.P479Rfs*22|2|0.4|ENSG00000169641|chr1:23092826-23092826|G/-|frameshift_variant	LUZP1|p.P479Rfs*22|2|0.4|ENSG00000169641|chr1:23092826-23092826|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	422.26751708984375	3	422.253433	1263.73847	0.098568	4.1621E-05	1.1716	0.00049472	1.2702	0.00053634	422.25401457970173	54.612	0.20309	54.612	54.434	54.637	0					5	3	2	0	0	0	0.27029	1	20895	20895		1.0715	0.91214	1	28562000			14006	5084	8395	8442	13447	13447					0.11714850722682968
HKTKLLIIHI	10	Unmodified	_HKTKLLIIHI_					0	0	0			REV__tr|U7SZJ2|U7SZJ2_FUSNUDUF454domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00772PE=4SV=1	REV__tr|U7SZJ2|U7SZJ2_FUSNUDUF454domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00772PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	608.4011840820312	2	608.400433	1214.78631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.36	1	58.071	57.571	58.571	-0.28879								0	0	0	0.96453	1	21932	21932		1.4819	0.15237	1		+		14007	17880	8396	8443	13448	13448					0.18751111870187742
HLAELIAEL	9	Unmodified	_HLAELIAEL_					0	0	0		nc|ENSG00000154370|Q96F44-2|TRIM11;nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11	nc|ENSG00000154370|Q96F44-2|TRIM11	nc|ENSG00000154370|Q96F44-2|TRIM11	MULTI-MSMS	HCT116MG_D190212_S1	1	504.7900695800781	2	504.78985	1007.56515	0.45943	0.00023191	0.16667	8.4136E-05	0.6261	0.00031605	504.78992317477383	55.209	0.25369	55.209	55.095	55.349	0					7	4	2	0	0	0	0.019399	1	21214	21214		97.075	32.838	1	35265000			14008	4217	8397	8444	13449	13449					0.06166627103038991
HLAELIAEL	9	Unmodified	_HLAELIAEL_					0	0	0		nc|ENSG00000154370|Q96F44-2|TRIM11;nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11	nc|ENSG00000154370|Q96F44-2|TRIM11	nc|ENSG00000154370|Q96F44-2|TRIM11	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7897033691406	2	504.78985	1007.56515	0.4803	0.00024245	-0.30352	-0.00015321	0.17678	8.9236E-05	504.78951393556144	55.385	0.30769	55.199	55.072	55.38	-0.18565					8	5	2	0	0	0	0.0066639	1	21372	21372		123.1	37.739	1	72698000			14009	4217	8397	8444	13450	13450					0.06166627103038991
HLAIKLEQV	9	Unmodified	_HLAIKLEQV_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	HCT116MG_D190212_S2	2	525.8191528320312	2	525.818941	1049.62333	0.33892	0.00017821	-0.087632	-4.6078E-05	0.25128	0.00013213	525.818894789983	38.388	0.26175	38.295	38.167	38.428	-0.09301					7	4	2	0	0	0	0.1535	1	14450	14450		47.594	13.193	1	23393000			14010	3894	8398	8445	13451	13451					0.10050308748327552
HLALREEVP	9	Unmodified	_HLALREEVP_					0	0	0			REV__ENSG00000135636|ENST00000410020|DYSF	REV__ENSG00000135636|ENST00000410020|DYSF	MSMS	HCT116MG_D190212_S1	1	532.2976684570312	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.877	1	30.877	30.377	31.377	0								0	0	0	0.76781	1	11341	11341		8.5933	0.68312	1		+		14011	10430	8399	8446	13452	13452					0.053405477088290354
HLARAERRG	9	Unmodified	_HLARAERRG_					0	0	0			REV__nc|ENSG00000170469|Q86W54-2|SPATA24	REV__nc|ENSG00000170469|Q86W54-2|SPATA24	MSMS	HCT116MG_D190212_S1	1	533.7747192382812	2	533.304855	1064.59516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.842	1	38.842	38.342	39.342	0								0	0	0	0.74083	1	14554	14554		17.113	0	1		+		14012	17208	8400	8447	13453	13453					0.06544423611603634
HLCPPWQHPT	10	Unmodified	_HLCPPWQHPT_					0	0	0		ENST00000403581.5_2_22:45073054-45073099:+|nuORF	ENST00000403581.5_2_22:45073054-45073099:+|nuORF	ENST00000403581.5_2_22:45073054-45073099:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	608.3855590820312	2	608.290025	1214.5655	0.34705	0.0002111	1.8359	0.0011168	2.1829	0.0013279	608.2921211895936	41.76	0.26902	41.458	41.303	41.572	-0.30257					10	8	2	0	0	0	0.31168	1	15551	15551		1.8442	1.2427	1	22995000			14013	7704	8401	8448	13454	13454					-0.0332027644876689
HLDDLKGTFA	10	Unmodified	_HLDDLKGTFA_					0	0	0		CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000196565|ENST00000336906|HBG2;HBG2|p.K77N|1|0.06|ENSG00000196565|chr11:5254376-5254376|C/A|missense_variant	CON__P02070	CON__P02070	MULTI-MSMS	HCT116MG_D190212_S2	2	558.788330078125	2	558.787838	1115.56112	0.32767	0.0001831	0.34674	0.00019376	0.67441	0.00037685	558.7880615758403	35.554	0.25733	35.412	35.283	35.541	-0.14245					9	4	3	0	0	0	0.036884	1	13291	13291		96.936	45.306	1	39442000		+	14014	546	8402	8449	13455	13455					0.007965376093125087
HLDEAIHVL	9	Unmodified	_HLDEAIHVL_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	523.7846069335938	2	523.785099	1045.55564	0.089014	4.6624E-05	-0.22014	-0.00011531	-0.13113	-6.8682E-05	523.7847761445208	40.642	0.30656	40.642	40.487	40.794	0					8	5	2	0	0	0	0.010304	1	15296	15296		112.59	45.249	1	15341000			14015	1256	8403	8450	13456	13456					0.03468858817495857
HLDEAIHVL	9	Unmodified	_HLDEAIHVL_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	523.7852783203125	2	523.785099	1045.55564	0.57094	0.00029905	-0.11471	-6.0086E-05	0.45623	0.00023896	523.7849851876899	40.666	0.41245	40.596	40.416	40.829	-0.069626					11	7	2	0	0	0	0.013464	1	15349	15349		104.8	53.944	1	51651000			14016	1256	8403	8450	13457	13457					0.03468858817495857
HLDEAQRLLY	10	Unmodified	_HLDEAQRLLY_					0	0	0		ENST00000600421.1_1_19:57901368-57922291:+|nuORF;nc|ENSG00000256060|Q8IVP9-2|ZNF547;ENSG00000152433|ENST00000282282|ZNF547;ZNF548|p.F346Lfs*163|1|0.22|ENSG00000188785|chr19:57399320-57399320|T/-|frameshift_variant;nc|ENSG00000188785|Q8NEK5|ZNF548;ENSG00000188785|ENST00000336128|ZNF548	ENST00000600421.1_1_19:57901368-57922291:+|nuORF	ENST00000600421.1_1_19:57901368-57922291:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	629.3319702148438	2	629.332944	1256.65134	0.422	0.00026558	-0.13877	-8.7335E-05	0.28323	0.00017824	629.3321255593567	38.602	0.37189	38.518	38.382	38.754	-0.084618					9	6	3	0	0	0	0.19554	1	14538	14538		69.338	53.189	1	15048000			14017	4150	8404	8451	13458	13458					0.03327586937780325
HLDEARTLL	9	Unmodified	_HLDEARTLL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	HCT116MG_D190212_S1	1	534.296142578125	2	534.29583	1066.57711	0.28195	0.00015065	-0.22272	-0.000119	0.059231	3.1647E-05	534.2957545990446	36.464	0.26225	36.464	36.312	36.574	0					8	4	2	0	0	0	0.094138	1	13609	13609		59.368	17.529	1	10834000			14018	4264	8405	8452	13459	13459					0.04648243846236255
HLDEARTLL	9	Unmodified	_HLDEARTLL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2958984375	2	534.29583	1066.57711	0.56204	0.0003003	-0.31474	-0.00016817	0.2473	0.00013213	534.2955368659702	36.536	0.31022	36.421	36.292	36.602	-0.11478					14	5	3	0	0	0	0.12421	1	13688	13688		53.404	11.564	1	38083000			14019	4264	8405	8452	13460	13460					0.04648243846236255
HLDEARTLL	9	Unmodified	_HLDEARTLL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	HCT116MG_D190212_S3	3	534.295654296875	2	534.29583	1066.57711	0.3895	0.00020811	0.042389	2.2648E-05	0.43189	0.00023076	534.2954478222629	36.703	0.31183	36.402	36.301	36.613	-0.30113					7	5	2	0	0	0	0.47809	1	13601	13601		18.146	4.2403	1	2044500			14020	4264	8405	8452	13461	13461					0.04648243846236255
HLDKYYAGL	9	Unmodified	_HLDKYYAGL_					0	0	0		sp|P16832|GL_HCMVAEnvelopeglycoproteinLOS=Humancytomegalovirus(strainAD169)OX=10360GN=gLPE=1SV=2;sp|F5HCH8|GL_HCMVMEnvelopeglycoproteinLOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gLPE=1SV=1	sp|P16832|GL_HCMVAEnvelopeglycoproteinLOS=Humancytomegalovirus(strainAD169)OX=10360GN=gLPE=1SV=2	sp|P16832|GL_HCMVAEnvelopeglycoproteinLOS=Humancytomegalovirus(strainAD169)OX=10360GN=gLPE=1SV=2	MSMS	HCT116MG_D190212_S1	1	540.7662353515625	2	540.279649	1078.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.459	1	21.459	20.959	21.959	0								0	0	0	0.76641	1	7550	7550		13.508	1.8676	1				14021	18194	8406	8453	13462	13462					0.00861456443226416
HLDLGILYY	9	Unmodified	_HLDLGILYY_					0	0	0		nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;DPAGT1|p.T234Hfs*116|1|0.35|ENSG00000172269|chr11:119098432-119098433|-/A|frameshift_variant	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	MSMS	HCT116MG_D190212_S1	1	553.7976684570312	2	553.797675	1105.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.208	1	56.208	55.708	56.708	0								0	0	0	0.34992	1	21603	21603		39.957	26.915	1				14022	5244	8407	8454	13463	13463					0.03222913620084
HLDLGILYY	9	Unmodified	_HLDLGILYY_					0	0	0		nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;DPAGT1|p.T234Hfs*116|1|0.35|ENSG00000172269|chr11:119098432-119098433|-/A|frameshift_variant	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7979736328125	2	553.797675	1105.5808	0.43558	0.00024122	0.048284	2.674E-05	0.48386	0.00026796	553.7977063408251	56.261	0.20668	56.078	55.949	56.156	-0.18261					8	3	3	0	0	0	0.041798	2	21709	21695;21709		101.72	34.378	1	125450000			14023	5244	8407	8454	13464;13465	13465					0.03222913620084
HLDLGILYY	9	Unmodified	_HLDLGILYY_					0	0	0		nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;DPAGT1|p.T234Hfs*116|1|0.35|ENSG00000172269|chr11:119098432-119098433|-/A|frameshift_variant	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	MULTI-SECPEP	HCT116MG_D190212_S2	2	1106.58837890625	1	1106.58807	1105.5808	0.71898	0.00079562	-0.14558	-0.0001611	0.5734	0.00063452	1106.5875393205338	56.261	0.20668	56.078	55.949	56.156	-0.18261					5	3	2	0	0	0	0.083218	1	21730	21730		67.344	35.038	1	31301000			14024	5244	8407	8454	13466	13466					0.03222913620084
HLDLTELAL	9	Unmodified	_HLDLTELAL_					0	0	0			REV__NRROS|p.R566H|1|0.4|ENSG00000174004|chr3:196661340-196661340|G/A|missense_variant	REV__NRROS|p.R566H|1|0.4|ENSG00000174004|chr3:196661340-196661340|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1024.571044921875	1	1024.56734	1023.56006	0.96474	0.00098844	0.2513	0.00025747	1.216	0.0012459	1024.567641308773	54.308	0.1523	54.308	54.231	54.384	0					4	2	2	0	0	0	0.065014	1	20851	20851		67.344	0	1	27390000	+		14025	17355	8408	8455	13467	13467					0.04922323240418791
HLDPAVKEV	9	Unmodified	_HLDPAVKEV_					0	0	0		ENSG00000168438|ENST00000307731|CDC40;ENST00000606893.5_1_6:110501354-110532119:+|nuORF;CDC40|p.G227Rfs*18|1|0.4|ENSG00000168438|chr6:110210748-110210749|-/A|frameshift_variant	ENSG00000168438|ENST00000307731|CDC40	ENSG00000168438|ENST00000307731|CDC40	MULTI-MSMS	HCT116MG_D190212_S2	2	504.279541015625	2	504.279649	1006.54475	0.38329	0.00019329	-0.53968	-0.00027215	-0.15639	-7.8864E-05	504.2794102101963	26.577	0.31159	26.215	26.076	26.387	-0.36164					8	5	2	0	0	0	0.13424	1	9648	9648		51.415	23.786	1	8919500			14026	5009	8409	8456	13468	13468					0.04173456443231771
HLDPTEMEKV	10	Unmodified	_HLDPTEMEKV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MSMS	HCT116MG_D190212_S1	1	600.261962890625	2	599.792263	1197.56997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.468	1	33.468	32.968	33.968	0								0	0	0	0.89062	1	12387	12387		17.113	6.289	1				14027	4663	8410	8457	13469	13469					-0.020908568164941244
HLDQSQKSLY	10	Unmodified	_HLDQSQKSLY_					0	0	0		ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant;ZKSCAN5|p.R547Tfs*4|1|0.06|ENSG00000196652|chr7:99531366-99531367|-/AACATTTCTTT|frameshift_variant;ZKSCAN5|p.K541Nfs*52|1|0.32|ENSG00000196652|chr7:99531347-99531347|A/-|frameshift_variant;ZKSCAN5|p.N691Mfs*12|1|0.45|ENSG00000196652|chr7:99531795-99531795|A/-|frameshift_variant;ENSG00000196652|ENST00000326775|ZKSCAN5	ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant	ZKSCAN5|p.K317Efs*21|1|0.25|ENSG00000196652|chr7:99525984-99525985|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	609.809326171875	2	609.809302	1217.60405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.981	1	25.612	25.112	26.112	-0.36914								0	0	0	0.10359	1	9380	9380		81.915	45.788	1				14028	6092	8411	8458	13470	13470					0.003953076667812638
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	HCT116MG_D190212_S1	1	565.2716674804688	2	564.769645	1127.52474	0.35859	0.00020252	-0.13871	-7.834E-05	0.21988	0.00012418	564.7693804915637	30.218	0.3506	30.218	30.049	30.399	0					10	6	2	0	0	0	0.0035381	2	11088	11088;11120		214.7	158.16	1	12857000			14029	1978	8412	8459	13471;13472	13471					-0.03392339287370305
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	HCT116MG_D190212_S2	2	564.7700805664062	2	564.769645	1127.52474	0.20869	0.00011786	0.57197	0.00032303	0.78066	0.00044089	564.7699303922743	30.565	0.30837	30.281	30.13	30.439	-0.28453					12	5	3	0	0	0	0.012596	1	11285	11285		133.7	133.7	1	29500000			14030	1978	8412	8459	13473	13473					-0.03392339287370305
HLDTTGTYTQY	11	Unmodified	_HLDTTGTYTQY_					0	0	0		ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant;ITGB4|p.E666Rfs*103|1|0.29|ENSG00000132470|chr17:75737326-75737326|G/-|frameshift_variant;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.P1123Lfs*37|1|0.47|ENSG00000132470|chr17:75750158-75750158|C/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	650.2965087890625	2	650.296224	1298.5779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.497	1	30.497	29.997	30.997	0								0	0	0	0.033511	1	11187	11187		88.954	62.933	1				14031	3186	8413	8460	13474	13474					-0.059450062953601446
HLDVKPANI	9	Unmodified	_HLDVKPANI_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	HCT116MG_D190212_S1	1	503.7880554199219	2	503.787641	1005.56073	0.43238	0.00021783	0.7473	0.00037648	1.1797	0.00059431	503.78802866583095	30.425	0.20754	30.425	30.296	30.503	0					5	3	2	0	0	0	0.034046	1	11188	11188		82.529	23.85	1	3477400			14032	2971	8414	8461	13475	13475					0.058171626801254206
HLDVKPANI	9	Unmodified	_HLDVKPANI_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	HCT116MG_D190212_S2	2	503.7877197265625	2	503.787641	1005.56073	0.34908	0.00017586	-0.30781	-0.00015507	0.041266	2.0789E-05	503.7875193303349	30.821	0.2594	30.554	30.456	30.716	-0.26704					6	4	2	0	0	0	0.0201	1	11370	11370		96.367	46.434	1	15864000			14033	2971	8414	8461	13476	13476					0.058171626801254206
HLEEKKRKRKK	11	Unmodified	_HLEEKKRKRKK_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MSMS	HCT116MG_D190212_S1	1	740.4641723632812	2	740.465158	1478.91576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.686	1	47.686	47.186	48.186	0								0	0	0	0.96149	1	18125	18125		0.30703	0.03801	1				14034	1151	8415	8462	13477	13477					0.19546261482128102
HLEEKKRKRKK	11	Unmodified	_HLEEKKRKRKK_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MSMS	HCT116MG_D190212_S4	4	740.464599609375	2	740.465158	1478.91576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.794	1	51.444	50.944	51.944	-0.34957								0	0	0	0.96141	1	19287	19287		0.35063	0.35063	1				14035	1151	8415	8462	13478	13478					0.19546261482128102
HLEEQSLY	8	Unmodified	_HLEEQSLY_					0	0	0			REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	MSMS	HCT116MG_D190212_S1	1	509.74560546875	2	509.745639	1017.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.264	1	28.264	27.764	28.764	0								0	0	0	0.8837	1	10290	10290		9.3474	0.75416	1		+		14036	15635	8416	8463	13479	13479					-0.03131413207427158
HLEGVQLGML	10	Unmodified	_HLEGVQLGML_					0	0	0			REV__ENSG00000124228|ENST00000618172|DDX27	REV__ENSG00000124228|ENST00000618172|DDX27	MSMS	HCT116MG_D190212_S1	1	366.19940185546875	3	366.198831	1095.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.439	1	38.439	37.939	38.939	0								0	0	0	0.93576	1	14391	14391		4.1895	0	1		+		14037	11782	8417	8464	13480	13480					0.03070072116929623
HLEQLAQYL	9	Unmodified	_HLEQLAQYL_					0	0	0		ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	MULTI-MSMS	HCT116MG_D190212_S3	3	372.20086669921875	3	372.201229	1113.58186	-0.25253	-9.3993E-05	0.059988	2.2328E-05	-0.19254	-7.1665E-05	372.2011782213415	34.607	0.31145	34.31	34.181	34.492	-0.29707					7	5	2	0	0	0	0.64512	1	12757	12757		5.2969	0	1	9821800			14038	5869	8418	8465	13481	13481					0.029611279890104925
HLESELFF	8	Unmodified	_HLESELFF_					0	0	0			REV__NCK1-STAG1|2|fusion	REV__NCK1-STAG1|2|fusion	MULTI-MSMS	HCT116MG_D190212_S2	2	511.25311279296875	2	511.2531	1020.49165	0.37224	0.00019031	-0.12946	-6.6189E-05	0.24278	0.00012412	511.2529042337373	57.256	0.25993	57.077	56.999	57.259	-0.17904					5	4	2	0	0	0	0.32897	1	22130	22130		56.541	12.134	1	24073000	+		14039	17340	8419	8466	13482	13482					-0.01777921339430577
HLESFECR	8	Unmodified	_HLESFECR_					0	0	0		ENST00000323851.11_1_8:134250471-134250510:-|nuORF	ENST00000323851.11_1_8:134250471-134250510:-|nuORF	ENST00000323851.11_1_8:134250471-134250510:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	511.25311279296875	2	510.732009	1019.44946	0.38194	0.00019507	-1.3455	-0.0006872	-0.96358	-0.00049213	510.73114884335416	57.385	0.25991	57.21	57.055	57.315	-0.17494					7	4	2	0	0	0	0.30262	1	22130	22130		13.508	9.1786	1	2981000			14040	7121	8420	8467	13483	13483					-0.05948220019445216
HLETPKPSI	9	Unmodified	_HLETPKPSI_					0	0	0		nc|ENSG00000243137|Q00888-2|PSG4;nc|ENSG00000231924|P11464-3|PSG1;ENSG00000243137|ENST00000405312|PSG4;ENSG00000231924|ENST00000436291|PSG1;nc|ENSG00000231924|P11464-4|PSG1;nc|ENSG00000231924|P11464-2|PSG1	nc|ENSG00000243137|Q00888-2|PSG4	nc|ENSG00000243137|Q00888-2|PSG4	MSMS	HCT116MG_D190212_S1	1	511.2879943847656	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.263	1	24.263	23.763	24.763	0								0	0	0	0.76781	1	8678	8678		8.5933	0	1				14041	6506	8421	8468	13484	13484					0.05093742960275449
HLEVLMCL	8	Unmodified	_HLEVLMCL_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MSMS	HCT116MG_D190212_S1	1	479.2488708496094	2	479.248449	956.482345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.758	1	27.758	27.258	28.258	0								0	0	0	0.8837	1	10086	10086		10.183	0	1		+		14042	10293	8422	8469	13485	13485					0.0023627077904393445
HLFGLNPPSY	10	Unmodified	_HLFGLNPPSY_					0	0	0			REV__ENST00000371975.8_1_1:46713425-46713950:+|nuORF	REV__ENST00000371975.8_1_1:46713425-46713950:+|nuORF	MSMS	HCT116MG_D190212_S2	2	382.1970520019531	3	382.197708	1143.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.619	1	27.277	26.777	27.777	-0.34201								0	0	0	0.91906	1	10039	10039		6.6304	0	1		+		14043	15170	8423	8470	13486	13486					0.005251453345636037
HLFGLNPPSY	10	Unmodified	_HLFGLNPPSY_					0	0	0			REV__ENST00000371975.8_1_1:46713425-46713950:+|nuORF	REV__ENST00000371975.8_1_1:46713425-46713950:+|nuORF	MSMS	HCT116MG_D190212_S4	4	382.1968994140625	3	382.197708	1143.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.922	1	28.582	28.082	29.082	-0.34059								0	0	0	0.91906	1	10422	10422		6.6304	0.43853	1		+		14044	15170	8423	8470	13487	13487					0.005251453345636037
HLFLRQCFE	9	Unmodified	_HLFLRQCFE_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|187|1|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|187|1|anti-sense	MSMS	HCT116MG_D190212_S2	2	398.20184326171875	3	398.202576	1191.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.157	1	27.827	27.327	28.327	-0.32987								0	0	0	0.7694	1	10259	10259		2.9952	1.9238	1		+		14045	16955	8424	8471	13488	13488					-0.0022310578892756894
HLGFTGGV	8	Unmodified	_HLGFTGGV_					0	0	0		tr|U7T0I3|U7T0I3_FUSNUEthanolaminetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00831PE=4SV=1	tr|U7T0I3|U7T0I3_FUSNUEthanolaminetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00831PE=4SV=1	tr|U7T0I3|U7T0I3_FUSNUEthanolaminetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00831PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	394.2084045410156	2	394.208495	786.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.545	1	29.309	28.809	29.809	-0.23655								0	0	0	0.8837	1	10738	10738		6.3541	0	1				14046	18548	8425	8472	13489	13489					0.0006928849171572438
HLGNVHDQDN	10	Unmodified	_HLGNVHDQDN_					0	0	0		nc|ENSG00000081154|Q8WW12-3|PCNP;ENSG00000081154|ENST00000265260|PCNP	nc|ENSG00000081154|Q8WW12-3|PCNP	nc|ENSG00000081154|Q8WW12-3|PCNP	MULTI-MSMS	HCT116MG_D190212_S1	1	574.7579345703125	2	574.757601	1147.50065	0.38136	0.00021919	0.19376	0.00011136	0.57512	0.00033055	574.7578155018851	15.978	0.20831	15.978	15.848	16.056	0					5	3	2	0	0	0	0.67282	1	5361	5361		22.658	11.834	1	2203200			14047	1411	8426	8473	13490	13490					-0.06720179721037312
HLGPEGRSV	9	Unmodified	_HLGPEGRSV_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	HCT116MG_D190212_S2	2	476.2537536621094	2	476.253966	950.493378	0.22302	0.00010621	-0.17664	-8.4127E-05	0.046377	2.2087E-05	476.2538081780736	22.057	0.41697	21.672	21.427	21.844	-0.38503					17	7	3	0	0	0	0.012596	1	7796	7796		106.94	52.167	1	26837000			14048	9680	8427	8474	13491	13491					0.01615132469191849
HLGPLQPLAP	10	Unmodified	_HLGPLQPLAP_					0	0	0			REV__nc|ENSG00000087116|O95450-2|ADAMTS2	REV__nc|ENSG00000087116|O95450-2|ADAMTS2	MULTI-SECPEP	HCT116MG_D190212_S2	2	521.763916015625	2	521.805834	1041.59712	0.54414	0.00028393	0.18852	9.8371E-05	0.73266	0.0003823	521.8057595568447	44.641	0.52018	44.556	44.274	44.794	-0.084797					13	9	2	0	0	0	0.29734	1	16960	16960		12.532	4.6214	1	11370000	+		14049	17084	8428	8475	13492	13492					0.0779803957684635
HLHIEVKRP	9	Unmodified	_HLHIEVKRP_					0	0	0		ENST00000513392.1_1_5:56873683-56910006:+|nuORF	ENST00000513392.1_1_5:56873683-56910006:+|nuORF	ENST00000513392.1_1_5:56873683-56910006:+|nuORF	MSMS	HCT116MG_D190212_S2	2	376.8927917480469	3	376.89273	1127.65636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.818	1	28.502	28.002	29.002	-0.31613								0	0	0	0.71969	1	10529	10529		12.241	0.72278	1				14050	8512	8429	8476	13493	13493					0.09763935591035988
HLHIWAWHLQN	11	Unmodified	_HLHIWAWHLQN_					0	0	0		ENST00000392048.7_2_2:231041257-231041356:-|nuORF	ENST00000392048.7_2_2:231041257-231041356:-|nuORF	ENST00000392048.7_2_2:231041257-231041356:-|nuORF	MSMS	HCT116MG_D190212_S1	1	727.8732299804688	2	727.875645	1453.73674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.504	1	52.504	52.004	53.004	0								0	0	0	0.95581	1	20084	20084		3.2813	1.7994	1				14051	7605	8430	8477	13494	13494					0.028017969140819332
HLHLETSSKEF	11	Unmodified	_HLHLETSSKEF_					0	0	0		LIPJ|p.Y98H|1|0.13|ENSG00000204022|chr10:88594107-88594107|T/C|missense_variant	LIPJ|p.Y98H|1|0.13|ENSG00000204022|chr10:88594107-88594107|T/C|missense_variant	LIPJ|p.Y98H|1|0.13|ENSG00000204022|chr10:88594107-88594107|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	664.33642578125	2	664.335684	1326.65681	0.83829	0.00055691	-0.23812	-0.00015819	0.60017	0.00039871	664.335417651155	31.466	0.31216	31.466	31.284	31.596	0					9	5	2	0	0	0	0.71068	1	11584	11584		17.113	3.498	1	12958000			14052	9298	8431	8478	13495	13495					0.006552657295515019
HLIDFMSEI	9	Unmodified	_HLIDFMSEI_					0	0	0		ENST00000477409.1_1_2:97001567-97024936:+|nuORF;NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant;ENSG00000121152|ENST00000240423|NCAPH	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MSMS	HCT116MG_D190212_S2	2	552.773681640625	2	552.773342	1103.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.655	1	56.472	55.972	56.972	-0.18261								0	0	0	0.30227	1	21863	21863		39.957	13.074	1				14053	2726	8432	8479	13496	13496					-0.015493230112952006
HLIFVLRYF	9	Unmodified	_HLIFVLRYF_					0	0	0			REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-MSMS	HCT116MG_D190212_S1	1	604.354248046875	2	604.352951	1206.69135	0.35162	0.0002125	1.5444	0.00093338	1.896	0.0011459	604.3536828908801	49.966	0.82483	49.966	49.595	50.42	0					23	15	3	0	0	0	0.57626	1	18928	18928		12.532	3.9383	1	37833000	+		14054	10743	8433	8480	13497	13497					0.09627178398977776
HLIHEVTKV	9	Unmodified	_HLIHEVTKV_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	HCT116MG_D190212_S1	1	538.3163452148438	2	538.316566	1074.61858	0.54093	0.00029119	0.098855	5.3215E-05	0.63978	0.0003444	538.3166474664771	24.699	0.26145	24.699	24.568	24.83	0					7	4	2	0	0	0	0.049866	1	8884	8884		80.676	20.602	1	6300700			14055	1529	8434	8481	13498	13498					0.0842542460554796
HLIHEVTKV	9	Unmodified	_HLIHEVTKV_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	HCT116MG_D190212_S2	2	538.316650390625	2	538.316566	1074.61858	0.53414	0.00028753	-0.30775	-0.00016567	0.22639	0.00012187	538.3163908442551	25.269	0.36506	24.894	24.764	25.129	-0.37521					16	6	4	0	0	0	0.024226	1	9115	9115		110.55	24.911	1	55225000			14056	1529	8434	8481	13499	13499					0.0842542460554796
HLIHEVTKV	9	Unmodified	_HLIHEVTKV_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	HCT116MG_D190212_S2	2	359.2132263183594	3	359.213469	1074.61858	-0.11147	-4.0041E-05	-0.2496	-8.9661E-05	-0.36107	-0.0001297	359.2132888172271	25.272	0.36506	24.897	24.764	25.129	-0.37521					14	6	3	0	0	0	0.026272	1	9116	9116		90.135	34.632	1	48040000			14057	1529	8434	8481	13500	13500					0.0842542460554796
HLIHEVTKV	9	Unmodified	_HLIHEVTKV_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	359.213469	1074.61858	-0.014758	-5.3014E-06	0.06344	2.2788E-05	0.048681	1.7487E-05	359.21331505624437	24.751	0.26163	24.751	24.621	24.882	0	-0.072648	0.00025534	NaN	90.135	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10695000			14058	1529	8434	8481							0.0842542460554796
HLINFSETL	9	Unmodified	_HLINFSETL_					0	0	0		nc|ENSG00000273749|Q7L576-2|CYFIP1;KBTBD2-CYFIP1|1|fusion;ENSG00000273749|ENST00000617928|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	537.2855834960938	2	537.284931	1072.55531	0.29785	0.00016003	0.66801	0.00035891	0.96586	0.00051894	537.2852564465323	49.997	0.20583	49.997	49.905	50.111	0					5	3	2	0	0	0	0.035349	1	19092	19092		81.89	47.488	1	9536200			14059	6671	8435	8482	13501	13501					0.021934390976639406
HLINFSETL	9	Unmodified	_HLINFSETL_					0	0	0		nc|ENSG00000273749|Q7L576-2|CYFIP1;KBTBD2-CYFIP1|1|fusion;ENSG00000273749|ENST00000617928|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	MSMS	HCT116MG_D190212_S2	2	537.2854614257812	2	537.284931	1072.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.22	1	50.048	49.548	50.548	-0.1719								0	0	0	0.026669	1	19243	19243		85.642	35.709	1				14060	6671	8435	8482	13502	13502					0.021934390976639406
HLIQKLKK	8	Unmodified	_HLIQKLKK_					0	0	0		ENST00000322244.9_1_4:68484631-68484682:-|nuORF	ENST00000322244.9_1_4:68484631-68484682:-|nuORF	ENST00000322244.9_1_4:68484631-68484682:-|nuORF	MSMS	HCT116MG_D190212_S3	3	504.3374938964844	2	504.339844	1006.66514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.265	1	44.956	44.456	45.456	-0.30927								0	0	0	0.8837	1	16943	16943		5.7604	0	1				14061	7109	8436	8483	13503	13503					0.16206909227503274
HLIQRFLLDLQ	11	Unmodified	_HLIQRFLLDLQ_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MSMS	HCT116MG_D190212_S2	2	698.4103393554688	2	698.408986	1394.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.152	1	36.024	35.524	36.524	-0.12799								0	0	0	0.95581	1	13510	13510		3.2813	0	1		+		14062	10999	8437	8484	13504	13504					0.12180987685337641
HLIQRFLLDLQ	11	Unmodified	_HLIQRFLLDLQ_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MSMS	HCT116MG_D190212_S2	2	698.4276733398438	2	698.408986	1394.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.407	1	36.279	35.779	36.779	-0.12799								0	0	0	0.95581	1	13613	13613		3.2813	0	1		+		14063	10999	8437	8484	13505	13505					0.12180987685337641
HLITHHQEPPH	11	Unmodified	_HLITHHQEPPH_					0	0	0		ENSG00000157330|ENST00000614859|CFAP107	ENSG00000157330|ENST00000614859|CFAP107	ENSG00000157330|ENST00000614859|CFAP107	MSMS	HCT116MG_D190212_S2	2	672.994873046875	2	673.341635	1344.66872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.949	1	42.879	42.379	43.379	-0.069984								0	0	0	0.93374	1	16270	16270		14.838	6.0929	1				14064	4324	8438	8485	13506	13506					0.010169272634129811
HLKAKTLLSLM	11	Unmodified	_HLKAKTLLSLM_					0	0	0			REV__MXD1|p.T94M|1|0.09|ENSG00000059728|chr2:69935428-69935428|C/T|missense_variant	REV__MXD1|p.T94M|1|0.09|ENSG00000059728|chr2:69935428-69935428|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	628.3868408203125	2	627.883758	1253.75296	0.79636	0.00050002	-0.021791	-1.3682E-05	0.77457	0.00048634	627.8847892779708	53.11	0.97736	53.11	52.794	53.771	0					36	18	3	0	0	0	0.74191	1	20346	20346		3.2813	0	1	64564000	+		14065	17047	8439	8486	13507	13507					0.13623742035974828
HLKDWQDVKED	11	Unmodified	_HLKDWQDVKED_					0	0	0		tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	706.8410034179688	2	706.843873	1411.67319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.155	1	37.155	36.655	37.655	0								0	0	0	0.89672	1	13873	13873		20.415	8.1739	1				14066	18542	8440	8487	13508	13508					-0.016176531043583964
HLKEGSVTSV	10	Unmodified	_HLKEGSVTSV_					0	0	0		ENST00000465121.5_1_3:52018080-52021658:+|nuORF;nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1	ENST00000465121.5_1_3:52018080-52021658:+|nuORF	ENST00000465121.5_1_3:52018080-52021658:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.2161865234375	2	528.787838	1055.56112	0.43517	0.00023011	0.0080851	4.2753E-06	0.44325	0.00023439	528.7881025561637	23.657	0.15569	23.274	23.195	23.351	-0.38324					4	2	2	0	0	0	0.19578	1	8460	8460		59.368	15.387	1	2580200			14067	6562	8441	8488	13509	13509					0.03556537609347288
HLKFLSVLSP	10	Unmodified	_HLKFLSVLSP_					0	0	0		IGFBP3|p.N228S|1|0.28|ENSG00000146674|chr7:45916615-45916615|T/C|missense_variant	IGFBP3|p.N228S|1|0.28|ENSG00000146674|chr7:45916615-45916615|T/C|missense_variant	IGFBP3|p.N228S|1|0.28|ENSG00000146674|chr7:45916615-45916615|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	570.3411254882812	2	570.842416	1139.67028	0.45604	0.00026033	0.027913	1.5934E-05	0.48395	0.00027626	570.8423819979123	46.259	0.30992	46.259	46.13	46.44	0					7	5	2	0	0	0	0.31042	1	17575	17575		6.2058	4.3615	1	9735800			14068	9233	8442	8489	13510	13510					0.10603168299462595
HLKGSPYPF	9	Unmodified	_HLKGSPYPF_					0	0	0			REV__LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	REV__LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	523.3226318359375	2	523.276909	1044.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.979	1	33.979	33.479	34.479	0								0	0	0	0.76694	1	12593	12593		11.64	0.52583	1		+		14069	16971	8443	8490	13511	13511					0.01877777651429824
HLKNLRVRSS	10	Unmodified	_HLKNLRVRSS_					0	0	0		ENST00000399096.2_1_17:18882860-18907015:-|nuORF;FAM83G|p.Q440Sfs*5|1|0.44|ENSG00000188522|chr17:18978348-18978348|G/-|frameshift_variant;ENSG00000188522|ENST00000388995|FAM83G	ENST00000399096.2_1_17:18882860-18907015:-|nuORF	ENST00000399096.2_1_17:18882860-18907015:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	604.8461303710938	2	605.36237	1208.71019	0.3187	0.00019293	-0.44755	-0.00027093	-0.12885	-7.8002E-05	605.3619308739153	51.014	0.25874	51.014	50.936	51.194	0					6	4	2	0	0	0	0.3093	1	19462	19462		9.3831	3.6513	1	4975300			14070	5987	8444	8491	13512	13512					0.11418108022735396
HLKRLLIVVVV	11	Unmodified	_HLKRLLIVVVV_					0	0	0		ENSG00000168484|ENST00000679463|SFTPC;nc|ENSG00000168484|P11686|SFTPC	ENSG00000168484|ENST00000679463|SFTPC	ENSG00000168484|ENST00000679463|SFTPC	MSMS	HCT116MG_D190212_S4	4	430.3011779785156	3	430.299097	1287.87546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.478	1	46.107	45.607	46.607	-0.37134								0	0	0	0.9619	1	17161	17161		0.094841	0.094841	1				14071	5013	8445	8492	13513	13513					0.24303946829695633
HLLEEPIYL	9	Unmodified	_HLLEEPIYL_					0	0	0		nc|ENSG00000065457|Q9BUB4-2|ADAT1;ADAT1|p.G358Rfs*17|1|0.13|ENSG00000065457|chr16:75608960-75608961|-/T|frameshift_variant;ENSG00000065457|ENST00000564657|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-SECPEP	HCT116MG_D190212_S2	2	564.25927734375	2	563.810782	1125.60701	0.3603	0.00020314	-0.5921	-0.00033383	-0.23179	-0.00013069	563.8103568950072	53.885	0.20612	53.696	53.584	53.79	-0.18939					5	3	2	0	0	0	0.10596	1	20765	20765		34.102	22.462	1	12899000			14072	55	8446	8493	13514	13514					0.04923182791549152
HLLEEPIYL	9	Unmodified	_HLLEEPIYL_					0	0	0		nc|ENSG00000065457|Q9BUB4-2|ADAT1;ADAT1|p.G358Rfs*17|1|0.13|ENSG00000065457|chr16:75608960-75608961|-/T|frameshift_variant;ENSG00000065457|ENST00000564657|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	563.810782	1125.60701	0.48856	0.00027545	-0.36302	-0.00020467	0.12554	7.0781E-05	563.8106911261864	53.642	0.20641	53.642	53.514	53.72	0	-0.026799	9.4674E-05	NaN	34.102	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10708000			14073	55	8446	8493							0.04923182791549152
HLLERDPQ	8	Unmodified	_HLLERDPQ_					0	0	0		ENST00000472324.5_1_X:152935914-152936728:-|nuORF;nc|ENSG00000130822|Q6P2M8-3|PNCK;ENST00000466074.5_1_X:152935914-152937529:-|nuORF;ENSG00000130822|ENST00000340888|PNCK;nc|ENSG00000130822|Q6P2M8-6|PNCK;nc|ENSG00000130822|Q6P2M8-2|PNCK;nc|ENSG00000130822|Q6P2M8-5|PNCK	ENST00000472324.5_1_X:152935914-152936728:-|nuORF	ENST00000472324.5_1_X:152935914-152936728:-|nuORF	MSMS	HCT116MG_D190212_S3	3	504.2649230957031	2	504.267073	1006.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.863	1	30.602	30.102	31.102	-0.26071								0	0	0	0.8837	1	11254	11254		7.9102	2.1497	1				14074	3108	8447	8494	13515	13515					0.016594016406543233
HLLKKKLLI	9	Unmodified	_HLLKKKLLI_					0	0	0		ENSG00000255398|ENST00000528880|HCAR3	ENSG00000255398|ENST00000528880|HCAR3	ENSG00000255398|ENST00000528880|HCAR3	MSMS	HCT116MG_D190212_S1	1	369.2649841308594	3	369.265505	1104.77469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.374	1	17.374	16.874	17.874	0								0	0	0	0.76991	1	5909	5909		1.1933	0.92432	1				14075	6604	8448	8495	13516	13516					0.22648914846831758
HLLKKKLLIQ	10	Unmodified	_HLLKKKLLIQ_					0	0	0		ENSG00000255398|ENST00000528880|HCAR3	ENSG00000255398|ENST00000528880|HCAR3	ENSG00000255398|ENST00000528880|HCAR3	MSMS	HCT116MG_D190212_S1	1	617.0673217773438	2	617.423908	1232.83326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.009	1	20.009	19.509	20.509	0								0	0	0	0.96377	1	6970	6970		1.6526	0	1				14076	6604	8449	8496	13517	13517					0.2261597142132814
HLLLAQVYL	9	Unmodified	_HLLLAQVYL_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MSMS	HCT116MG_D190212_S1	1	534.9496459960938	2	535.32386	1068.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.596	1	36.596	36.096	37.096	0								0	0	0	0.76862	1	13647	13647		5.2307	0.47466	1				14077	2812	8450	8497	13518	13518					0.10159496753703934
HLLNESPML	9	Unmodified	_HLLNESPML_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.Q1211Kfs*27|1|0.25|ENSG00000155561|chr7:135617188-135617188|C/-|frameshift_variant;NUP205|p.F1204Lfs*34|1|0.12|ENSG00000155561|chr7:135617163-135617163|T/-|frameshift_variant;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MSMS	HCT116MG_D190212_S2	2	527.2741088867188	2	527.273509	1052.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.998	1	44.906	44.406	45.406	-0.092472								0	0	0	0.46109	1	17102	17102		30.637	5.2372	1				14078	4256	8451	8498	13519	13519					0.008300967085460798
HLLPLRLHRLL	11	Unmodified	_HLLPLRLHRLL_					0	0	0			REV__ENST00000311117.7_1_7:104702708-104703876:+|nuORF	REV__ENST00000311117.7_1_7:104702708-104703876:+|nuORF	MSMS	HCT116MG_D190212_S1	1	690.9518432617188	2	690.951156	1379.88776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.344	1	47.344	46.844	47.844	0								0	0	0	0.96141	1	17986	17986		0.35063	0	1		+		14079	14832	8452	8499	13520	13520					0.2130098329273551
HLLRKSIQKHV	11	Unmodified	_HLLRKSIQKHV_					0	0	0			REV__TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant	REV__TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	452.9483642578125	3	453.617489	1357.83064	0.13826	6.2716E-05	-0.43571	-0.00019764	-0.29745	-0.00013493	453.61726507456586	55.684	0.20592	55.684	55.554	55.76	0					5	3	2	0	0	0	0.36618	1	21402	21402		1.3296	0.82369	1	53945000	+		14080	12301	8453	8500	13521	13521					0.1660351601635739
HLLVLRRPVH	10	Unmodified	_HLLVLRRPVH_					0	0	0		ENST00000555701.5_1_14:97018895-97018937:+|nuORF	ENST00000555701.5_1_14:97018895-97018937:+|nuORF	ENST00000555701.5_1_14:97018895-97018937:+|nuORF	MSMS	HCT116MG_D190212_S1	1	620.3949584960938	2	620.393474	1238.77239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.751	1	63.751	63.251	64.251	0								0	0	0	0.96937	1	24625	24625		0.40072	0	1				14081	8785	8454	8501	13522	13522					0.16255879161712983
HLLWTREDLQE	11	Unmodified	_HLLWTREDLQE_					0	0	0			REV__PASD1|p.E385D|1|0.05|ENSG00000166049|chrX:151671121-151671121|A/C|missense_variant	REV__PASD1|p.E385D|1|0.05|ENSG00000166049|chrX:151671121-151671121|A/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	720.3659057617188	2	720.367515	1438.72048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.817	1	44.817	44.317	45.317	0								0	0	0	0.95581	1	16964	16964		3.2813	1.4371	1		+		14082	17384	8455	8502	13523	13523					0.018666261666567152
HLMFVLHHL	9	Unmodified	_HLMFVLHHL_					0	0	0		ENST00000343137.8_1_1:14107102-14107186:+|nuORF	ENST00000343137.8_1_1:14107102-14107186:+|nuORF	ENST00000343137.8_1_1:14107102-14107186:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	382.1971435546875	3	382.879545	1145.6168	-0.017807	-6.8178E-06	2.2602	0.00086539	2.2424	0.00085857	383.21475118161004	29.503	0.15654	29.503	29.425	29.581	0					4	2	2	0	0	0	0.26234	1	10777	10777		9.3831	6.3879	1	3940200			14083	7242	8456	8503	13524	13524					0.0498209231598139
HLMFYQLILA	10	Unmodified	_HLMFYQLILA_					0	0	0			REV__ENSG00000236396|ENST00000588001|SLC35G4	REV__ENSG00000236396|ENST00000588001|SLC35G4	MSMS	HCT116MG_D190212_S1	1	624.8473510742188	2	624.844102	1247.67365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.068	1	14.068	13.568	14.568	0								0	0	0	0.96911	1	4586	4586		0.45834	0.057624	1		+		14084	14336	8457	8504	13525	13525					0.059720950818473284
HLNGHIKQV	9	Unmodified	_HLNGHIKQV_					0	0	0		ENST00000494109.1_1_22:31731618-31739122:-|nuORF;ENST00000465287.1_1_22:31737393-31739122:-|nuORF;nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	ENST00000494109.1_1_22:31731618-31739122:-|nuORF	ENST00000494109.1_1_22:31731618-31739122:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	523.2991333007812	2	523.298707	1044.58286	0.27957	0.0001463	0.22913	0.0001199	0.5087	0.0002662	523.2989091032058	18.897	0.20861	18.897	18.819	19.027	0					5	3	2	0	0	0	0.30117	1	6556	6556		30.637	30.637	1	4331500			14085	1665	8458	8505	13526	13526					0.06235387148558402
HLNGHIKQV	9	Unmodified	_HLNGHIKQV_					0	0	0		ENST00000494109.1_1_22:31731618-31739122:-|nuORF;ENST00000465287.1_1_22:31737393-31739122:-|nuORF;nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	ENST00000494109.1_1_22:31731618-31739122:-|nuORF	ENST00000494109.1_1_22:31731618-31739122:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2987670898438	2	523.298707	1044.58286	0.35816	0.00018743	-0.1467	-7.6768E-05	0.21146	0.00011066	523.2986433761	19.804	0.25931	19.429	19.298	19.558	-0.37503					10	4	3	0	0	0	0.0090481	2	6909	6909;6936		115.69	69.671	1	26694000			14086	1665	8458	8505	13527;13528	13527					0.06235387148558402
HLNKGIKQV	9	Unmodified	_HLNKGIKQV_					0	0	0		ENST00000491322.1_1_1:182356257-182357923:-|nuORF;ENST00000489818.5_1_1:182354893-182357872:-|nuORF;ENST00000475808.5_1_1:182355349-182357923:-|nuORF;ENSG00000135821|ENST00000331872|GLUL	ENST00000491322.1_1_1:182356257-182357923:-|nuORF	ENST00000491322.1_1_1:182356257-182357923:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	518.81689453125	2	518.816733	1035.61891	0.05589	2.8997E-05	0.32542	0.00016883	0.38131	0.00019783	518.8168980913773	18.918	0.26114	18.549	18.418	18.68	-0.3695					6	4	2	0	0	0	0.19461	1	6559	6559		41.84	26.591	1	9272900			14087	3375	8459	8506	13529	13529					0.10252844325441401
HLNNVQNL	8	Unmodified	_HLNNVQNL_					0	0	0		ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3|ZFHX4;ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;ZFHX4|p.I2143Nfs*7|1|0.31|ENSG00000091656|chr8:76853343-76853344|-/A|frameshift_variant;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ZFHX4|p.P2056Hfs*26|1|0.19|ENSG00000091656|chr8:76853081-76853084|CCTC/-|frameshift_variant;ZFHX4|p.K1867Nfs*7|1|0.09|ENSG00000091656|chr8:76852518-76852518|A/-|frameshift_variant;ZFHX4|p.L1719Cfs*6|1|0.13|ENSG00000091656|chr8:76852073-76852073|T/-|frameshift_variant;ZFHX4|p.Q1674Afs*4|1|0.14|ENSG00000091656|chr8:76851934-76851935|-/A|frameshift_variant;ZFHX4|p.H1565Tfs*5|1|0.28|ENSG00000091656|chr8:76851613-76851613|T/-|frameshift_variant;ZFHX4|p.K1442Nfs*10|1|0.18|ENSG00000091656|chr8:76851241-76851241|A/-|frameshift_variant;ZFHX4|p.V1343Sfs*4|1|0.08|ENSG00000091656|chr8:76850945-76850946|-/A|frameshift_variant;ZFHX4|p.P2057Hfs*26|2|0.17|ENSG00000091656|chr8:76853084-76853084|C/-|frameshift_variant	ENSG00000091656|ENST00000651372|ZFHX4	ENSG00000091656|ENST00000651372|ZFHX4	MULTI-MSMS	HCT116MG_D190212_S3	3	476.2545166015625	2	476.253966	950.493378	0.10179	4.8476E-05	0.51513	0.00024533	0.61691	0.00029381	476.2542394528285	21.278	0.31414	21.297	21.063	21.377	0.018446					7	5	2	0	0	0	0.66848	1	7413	7413		26.341	0.94196	1	3859300			14088	1568	8460	8507	13530	13530					0.016151324691804803
HLNSHVRQV	9	Unmodified	_HLNSHVRQV_					0	0	0		nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ	nc|ENSG00000103495|P56270-3|MAZ	nc|ENSG00000103495|P56270-3|MAZ	MULTI-MSMS	HCT116MG_D190212_S2	2	545.2993774414062	2	545.299239	1088.58392	0.19836	0.00010817	0.27656	0.00015081	0.47492	0.00025898	545.2993063440119	18.345	0.2092	17.982	17.851	18.061	-0.36325					7	3	3	0	0	0	0.24534	1	6327	6327		36.506	19.393	1	13408000			14089	1897	8461	8508	13531	13531					0.043176015174594795
HLNSHVRQV	9	Unmodified	_HLNSHVRQV_					0	0	0		nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ	nc|ENSG00000103495|P56270-3|MAZ	nc|ENSG00000103495|P56270-3|MAZ	MSMS	HCT116MG_D190212_S2	2	363.86834716796875	3	363.868585	1088.58392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.427	1	18.064	17.564	18.564	-0.36325								0	0	0	0.76694	1	6332	6332		21.537	12.154	1				14090	1897	8461	8508	13532	13532					0.043176015174594795
HLPGAPGG	8	Unmodified	_HLPGAPGG_					0	0	0		nc|ENSG00000158850|O60512-2|B4GALT3;ENST00000493164.5_1_1:161144758-161146233:-|nuORF;B4GALT3|p.R212Gfs*10|1|0.42|ENSG00000158850|chr1:161173905-161173905|G/-|frameshift_variant;ENST00000470882.5_1_1:161143647-161146009:-|nuORF;ENSG00000158850|ENST00000319769|B4GALT3	nc|ENSG00000158850|O60512-2|B4GALT3	nc|ENSG00000158850|O60512-2|B4GALT3	MULTI-MSMS	HCT116MG_D190212_S1	1	705.3695068359375	1	705.36785	704.360573	0.48794	0.00034417	1.2861	0.00090715	1.774	0.0012513	705.3688241107307	40.557	0.30613	40.557	40.383	40.69	0					9	5	2	0	0	0	0.87576	1	15235	15235		0.79363	0	1	27698000			14091	247	8462	8509	13533	13533					-0.003432671967971146
HLPKKPMV	8	Unmodified	_HLPKKPMV_					0	0	0		nc|ENSG00000185246|Q86UA1-2|PRPF39;ENST00000554785.1_1_14:45579308-45583868:+|nuORF;ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39	nc|ENSG00000185246|Q86UA1-2|PRPF39	nc|ENSG00000185246|Q86UA1-2|PRPF39	MSMS	HCT116MG_D190212_S4	4	475.7015075683594	2	475.286223	948.557893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.621	1	35.235	34.735	35.735	-0.38606								0	0	0	0.8837	1	13021	13021		5.7604	0	1				14092	5811	8463	8510	13534	13534					0.08155616021633705
HLPPESLLYPR	11	Unmodified	_HLPPESLLYPR_					0	0	0			REV__CACHD1|p.Q1185Sfs*23|1|0.37|ENSG00000158966|chr1:64691433-64691434|-/C|frameshift_variant	REV__CACHD1|p.Q1185Sfs*23|1|0.37|ENSG00000158966|chr1:64691433-64691434|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	661.36767578125	2	661.366787	1320.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.941	1	30.577	30.077	31.077	-0.36416								0	0	0	0.94284	1	11209	11209		10.074	0	1		+		14093	10074	8464	8511	13535	13535					0.07149036868577241
HLPSDFTPA	9	Unmodified	_HLPSDFTPA_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	492.7432556152344	2	492.742899	983.471246	0.38416	0.00018929	0.025663	1.2645E-05	0.40982	0.00020194	492.7428384693063	35.923	1.7221	35.923	35.424	37.146	0					77	32	3	0	0	0	0.13706	2	13255	13255;13481		50.855	16.04	1	51372000		+	14094	545	8465	8512	13536;13537	13536					-0.02115091999246488
HLPSDFTPA	9	Unmodified	_HLPSDFTPA_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	984.48046875	1	984.478522	983.471246	0.6104	0.00060092	0.43952	0.00043269	1.0499	0.0010336	984.4785926035418	35.853	1.2034	35.853	35.475	36.679	0					47	22	3	0	0	0	0.035914	2	13281	13281;13507		81.613	41.656	1	17995000		+	14095	545	8465	8512	13538;13539	13538					-0.02115091999246488
HLPSDFTPA	9	Unmodified	_HLPSDFTPA_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	492.74261474609375	2	492.742899	983.471246	0.55883	0.00027536	0.065136	3.2096E-05	0.62397	0.00030746	492.7428404114483	35.947	1.549	35.819	35.401	36.95	-0.12799					85	29	4	0	0	0	0.13706	2	13314	13314;13540		50.855	8.3885	1	204410000		+	14096	545	8465	8512	13540;13541	13540					-0.02115091999246488
HLPSDFTPA	9	Unmodified	_HLPSDFTPA_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	984.4795532226562	1	984.478522	983.471246	1.0374	0.0010213	-0.117	-0.00011518	0.92042	0.00090614	984.4783370611117	36.051	1.549	35.923	35.401	36.95	-0.12799					72	29	3	0	0	0	0.013464	3	13563	13326;13563;13800		104.8	62.705	1	83983000		+	14097	545	8465	8512	13542;13543;13544	13543					-0.02115091999246488
HLQRHRRIH	9	Unmodified	_HLQRHRRIH_					0	0	0		ZNF320|p.R149Q|1|0.17|ENSG00000182986|chr19:52881680-52881680|C/T|missense_variant	ZNF320|p.R149Q|1|0.17|ENSG00000182986|chr19:52881680-52881680|C/T|missense_variant	ZNF320|p.R149Q|1|0.17|ENSG00000182986|chr19:52881680-52881680|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	417.86798095703125	3	418.246389	1251.71734	0.19704	8.241E-05	1.1079	0.00046336	1.3049	0.00054577	418.2468416651488	36.328	0.25912	36.2	36.071	36.33	-0.12799					7	4	2	0	0	0	0.2493	1	13554	13554		17.113	4.8722	1	28510000			14098	18725	8466	8513	13545	13545					0.1015488541384002
HLQTHEQKL	9	Unmodified	_HLQTHEQKL_					0	0	0			REV__CTR9|p.L241Gfs*2|1|0.09|ENSG00000198730|chr11:10760300-10760301|-/GG|frameshift_variant	REV__CTR9|p.L241Gfs*2|1|0.09|ENSG00000198730|chr11:10760300-10760301|-/GG|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	378.5389404296875	3	378.540245	1132.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.015	1	36.015	35.515	36.515	0								0	0	0	0.76809	1	13416	13416		7.609	4.8738	1		+		14099	10304	8467	8514	13546	13546					0.03791048594825952
HLQVLLLLN	9	Unmodified	_HLQVLLLLN_					0	0	0		ENST00000514903.7_2_5:70858279-70858656:+|nuORF	ENST00000514903.7_2_5:70858279-70858656:+|nuORF	ENST00000514903.7_2_5:70858279-70858656:+|nuORF	MSMS	HCT116MG_D190212_S1	1	354.8944091796875	3	354.893848	1061.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.073	1	14.073	13.573	14.573	0								0	0	0	0.77025	1	4588	4588		0	0	1				14100	8525	8468	8515	13547	13547					0.13135185645069214
HLRDVLPIRQ	10	Unmodified	_HLRDVLPIRQ_					0	0	0			REV__FLG|p.T2193Hfs*226|1|0.45|ENSG00000143631|chr1:152308309-152308309|T/-|frameshift_variant	REV__FLG|p.T2193Hfs*226|1|0.45|ENSG00000143631|chr1:152308309-152308309|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	416.2491149902344	3	416.250806	1245.73059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.918	1	36.803	36.303	37.303	-0.11478								0	0	0	0.96337	1	13821	13821		1.7423	0.28716	1		+	+	14101	16826	8469	8516	13548	13548					0.11755278682539938
HLRHRQLLF	9	Unmodified	_HLRHRQLLF_					0	0	0			REV__LY75|p.F1691L|1|0.06|ENSG00000054219|chr2:159805142-159805142|A/G|missense_variant	REV__LY75|p.F1691L|1|0.06|ENSG00000054219|chr2:159805142-159805142|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	407.243896484375	3	407.243874	1218.70979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.738	1	43.364	42.864	43.864	-0.37433								0	0	0	0.76875	1	16088	16088		5.2969	2.3016	1		+		14102	16996	8470	8517	13549	13549					0.1091873309355833
HLRHRQLLF	9	Unmodified	_HLRHRQLLF_					0	0	0			REV__LY75|p.F1691L|1|0.06|ENSG00000054219|chr2:159805142-159805142|A/G|missense_variant	REV__LY75|p.F1691L|1|0.06|ENSG00000054219|chr2:159805142-159805142|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	407.2442626953125	3	407.243874	1218.70979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.844	1	43.47	42.97	43.97	-0.37433								0	0	0	0.76948	1	16131	16131		2.7352	0	1		+		14103	16996	8470	8517	13550	13550					0.1091873309355833
HLRHSPGP	8	Unmodified	_HLRHSPGP_					0	0	0		nc|ENSG00000156453|Q08174|PCDH1;ENSG00000156453|ENST00000287008|PCDH1	nc|ENSG00000156453|Q08174|PCDH1	nc|ENSG00000156453|Q08174|PCDH1	MULTI-MSMS	HCT116MG_D190212_S1	1	450.74371337890625	2	450.743568	899.472583	0.18223	8.214E-05	-0.16578	-7.4723E-05	0.016456	7.4176E-06	450.74341174379674	20.392	0.20845	20.392	20.279	20.488	0					7	3	3	0	0	0	0.55794	1	7136	7136		36.044	7.5574	1	7289700			14104	4286	8471	8518	13551	13551					0.018825868801854995
HLRILREHRL	10	Unmodified	_HLRILREHRL_					0	0	0			REV__ENSG00000125508|ENST00000217188|SRMS	REV__ENSG00000125508|ENST00000217188|SRMS	MSMS	HCT116MG_D190212_S1	1	671.9115600585938	2	671.912562	1341.81057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.216	1	54.216	53.716	54.716	0								0	0	0	0.95351	1	20783	20783		3.9444	0	1		+		14105	11810	8472	8519	13552	13552					0.1533376507641151
HLRKLGQFA	9	Unmodified	_HLRKLGQFA_					0	0	0			REV__nc|ENSG00000174348|Q7Z5L7-4|PODN	REV__nc|ENSG00000174348|Q7Z5L7-4|PODN	MSMS	HCT116MG_D190212_S1	1	535.3170776367188	2	535.3169	1068.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.61	1	53.61	53.11	54.11	0								0	0	0	0.76913	1	20535	20535		3.9444	0	1		+		14106	13480	8473	8520	13553	13553					0.08768264045284013
HLRKRIHRPRR	11	Unmodified	_HLRKRIHRPRR_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	HCT116MG_D190212_S2	2	508.7538146972656	3	508.990543	1523.9498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.648	1	22.263	21.763	22.763	-0.3852								0	0	0	0.96192	1	8034	8034		0.08335	0	1				14107	9527	8474	8521	13554	13554					0.20878147484427245
HLRKRKFLPK	10	Unmodified	_HLRKRKFLPK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	662.4320068359375	2	661.930223	1321.84589	0.62645	0.00041467	1.633	0.0010809	2.2595	0.0014956	662.4321280021359	58.539	0.35443	58.539	58.312	58.666	0					10	6	2	0	0	0	0.89248	1	22562	22562		0.45834	0.10771	1	59438000			14108	7239	8475	8522	13555	13555					0.19784427604213306
HLRLGRRP	8	Unmodified	_HLRLGRRP_					0	0	0		ENST00000397661.6_1_19:13206434-13206683:+|nuORF	ENST00000397661.6_1_19:13206434-13206683:+|nuORF	ENST00000397661.6_1_19:13206434-13206683:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	502.81439208984375	2	502.814859	1003.61517	0.30541	0.00015357	-1.0104	-0.00050805	-0.70501	-0.00035449	502.8142540324768	51.678	1.1873	51.678	51.451	52.639	0					46	22	4	0	0	0	0.86564	1	19730	19730		2.5775	2.5775	1	1023599999.9999999			14109	7669	8476	8523	13556	13556					0.11350219342239143
HLRLLWRKLL	10	Unmodified	_HLRLLWRKLL_					0	0	0		ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	MSMS	HCT116MG_D190212_S4	4	674.4389038085938	2	674.440424	1346.86629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.198	1	59.926	59.426	60.426	-0.27156								0	0	0	0.96937	1	22675	22675		0.40072	0.093686	1				14110	1790	8477	8524	13557	13557					0.20673598264056636
HLRLPRQQP	9	Unmodified	_HLRLPRQQP_					0	0	0			REV__ENST00000353275.9_2_4:1980669-1980825:+|nuORF	REV__ENST00000353275.9_2_4:1980669-1980825:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	572.8399047851562	2	572.838531	1143.66251	0.40352	0.00023115	0.83736	0.00047967	1.2409	0.00071083	572.8395998033103	55.663	0.30841	55.663	55.554	55.862	0					7	5	2	0	0	0	0.26328	1	21426	21426		1.8442	0	1	11792000	+		14111	15024	8478	8525	13558	13558					0.09642453822561947
HLRLPRQQP	9	Unmodified	_HLRLPRQQP_					0	0	0			REV__ENST00000353275.9_2_4:1980669-1980825:+|nuORF	REV__ENST00000353275.9_2_4:1980669-1980825:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	572.840087890625	2	572.838531	1143.66251	0.43356	0.00024836	1.1324	0.00064867	1.5659	0.00089703	572.8398474630651	55.799	0.30994	55.613	55.483	55.793	-0.18565					7	5	2	0	0	0	0.26328	1	21552	21552		1.8442	0	1	17397000	+		14112	15024	8478	8525	13559	13559					0.09642453822561947
HLRRARRRQR	10	Unmodified	_HLRRARRRQR_					0	0	0			REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	468.9591064453125	3	468.959242	1403.8559	0.091274	4.2804E-05	-0.0045399	-2.129E-06	0.086735	4.0675E-05	468.95916607490346	51.229	1.0777	51.229	50.472	51.549	0					64	20	4	0	0	0	0.8938	1	19585	19585		0.13989	0.13989	1	189710000	+		14113	17553	8479	8526	13560	13560					0.17012428382145117
HLRRARRRQR	10	Unmodified	_HLRRARRRQR_					0	0	0			REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	468.95947265625	3	468.959242	1403.8559	0.31108	0.00014589	-0.086803	-4.0707E-05	0.22428	0.00010518	468.95915941745824	52.819	2.8327	52.819	51.5	54.333	0					197	54	5	0	0	0	0.8938	3	19816	19816;20124;20685		0.13989	0.13989	1	1314500000	+		14114	17553	8479	8526	13561;13562;13563	13561					0.17012428382145117
HLRRARRRQR	10	Unmodified	_HLRRARRRQR_					0	0	0			REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	468.9591064453125	3	468.959242	1403.8559	0.31108	0.00014589	-0.086803	-4.0707E-05	0.22428	0.00010518	468.95915941745824	52.819	2.8327	52.819	51.5	54.333	0					197	54	5	0	0	0	0.31198	1	20764	20764		0.13989	0.13989	1	1314500000	+		14115	17553	8479	8526	13564	13564					0.17012428382145117
HLRRARRRQR	10	Unmodified	_HLRRARRRQR_					0	0	0			REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	468.958984375	3	468.959242	1403.8559	0.266	0.00012474	-0.074952	-3.5149E-05	0.19105	8.9593E-05	469.29362412880016	53.969	1.9847	53.67	52.568	54.553	-0.29946					62	37	2	0	0	0	0.8938	2	20149	20149;20389		0.13989	0.13989	1	17057000	+		14116	17553	8479	8526	13565;13566	13565					0.17012428382145117
HLRRARRRQR	10	Unmodified	_HLRRARRRQR_					0	0	0			REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	468.95904541015625	3	468.959242	1403.8559	0.14234	6.6752E-05	0.1218	5.7119E-05	0.26414	0.00012387	468.95922862891405	53.941	3.0167	53.612	51.639	54.655	-0.32923					163	57	5	0	0	0	0.8938	2	19527	19527;19799		0.13989	0.13989	1	47080000	+		14117	17553	8479	8526	13567;13568	13567					0.17012428382145117
HLRRRRRA	8	Unmodified	_HLRRRRRA_					0	0	0			REV__ENST00000361837.8_1_16:2510099-2510671:+|nuORF	REV__ENST00000361837.8_1_16:2510099-2510671:+|nuORF	MSMS	HCT116MG_D190212_S4	4	374.23834228515625	3	374.239346	1119.69621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.381	1	25.101	24.601	25.601	-0.27958								0	0	0	0.8837	1	8991	8991		0.45834	0.057624	1		+		14118	15100	8480	8527	13569	13569					0.14114920104998419
HLSDALVEV	9	Unmodified	_HLSDALVEV_					0	0	0			REV__ENSG00000243646|ENST00000290200|IL10RB	REV__ENSG00000243646|ENST00000290200|IL10RB	MULTI-MSMS	HCT116MG_D190212_S1	1	491.764404296875	2	491.763832	981.513111	0.47517	0.00023367	-0.30775	-0.00015134	0.16742	8.2332E-05	491.7636670047383	41.888	0.20855	41.888	41.758	41.966	0					6	3	2	0	0	0	0.031005	1	15801	15801		85.357	0	1	12522000	+		14119	14365	8481	8528	13570	13570					0.021614636892991257
HLSDALVEV	9	Unmodified	_HLSDALVEV_					0	0	0			REV__ENSG00000243646|ENST00000290200|IL10RB	REV__ENSG00000243646|ENST00000290200|IL10RB	MULTI-MSMS	HCT116MG_D190212_S2	2	491.76397705078125	2	491.763832	981.513111	0.34459	0.00016946	0.32949	0.00016203	0.67408	0.00033149	491.7638516318389	41.903	0.36306	41.834	41.653	42.016	-0.068199					12	6	3	0	0	0	0.013464	1	15849	15849		104.8	0	1	46403000	+		14120	14365	8481	8528	13571	13571					0.021614636892991257
HLSDALVEV	9	Unmodified	_HLSDALVEV_					0	0	0			REV__ENSG00000243646|ENST00000290200|IL10RB	REV__ENSG00000243646|ENST00000290200|IL10RB	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.25372314453125	2	491.763832	981.513111	0.34459	0.00016946	0.32949	0.00016203	0.67408	0.00033149	491.7638516318389	41.903	0.36306	41.834	41.653	42.016	-0.068199					12	6	3	0	0	0	0.14956	1	15811	15811		32.305	0	1	46403000	+		14121	14365	8481	8528	13572	13572					0.021614636892991257
HLSDALVEV	9	Unmodified	_HLSDALVEV_					0	0	0			REV__ENSG00000243646|ENST00000290200|IL10RB	REV__ENSG00000243646|ENST00000290200|IL10RB	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	491.763832	981.513111	0.47517	0.00023367	-0.30775	-0.00015134	0.16742	8.2332E-05	491.7636670047383	41.888	0.20855	41.888	41.758	41.966	0	0.026658	-0.00042952	NaN	104.8	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12522000	+		14122	14365	8481	8528							0.021614636892991257
HLSDMLQQL	9	Unmodified	_HLSDMLQQL_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000562407.1_1_16:23695226-23699079:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	543.2303466796875	2	542.776416	1083.53828	0.29078	0.00015783	1.0387	0.00056376	1.3294	0.00072159	542.7767826147688	50.103	0.20419	49.939	49.789	49.993	-0.16369					5	3	2	0	0	0	0.027492	1	19198	19198		88.904	41.155	1	10997000			14123	4883	8482	8529	13573	13573					-0.00014804779766564025
HLSFPNGY	8	Unmodified	_HLSFPNGY_					0	0	0			REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1	REV__tr|U7T206|U7T206_FUSNUCysteinedesulfuraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00795PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	467.7247314453125	2	467.72451	933.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.874	1	36.759	36.259	37.259	-0.11478								0	0	0	0.8837	1	13803	13803		15.768	0	1		+		14124	17907	8483	8530	13574	13574					-0.03491343825135118
HLSIINEYL	9	Unmodified	_HLSIINEYL_					0	0	0		IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant;ENSG00000140575|ENST00000268182|IQGAP1	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant	IQGAP1|p.S1529Afs*10|1|0.15|ENSG00000140575|chr15:90492665-90492665|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	551.2996215820312	2	551.300581	1100.58661	0.23528	0.00012971	-0.31068	-0.00017128	-0.0754	-4.1568E-05	551.3003163337626	53.336	0.20548	53.147	53.018	53.223	-0.18922					6	3	2	0	0	0	0.0063744	1	20522	20522		125.62	47.64	1	22565000			14125	3678	8484	8531	13575	13575					0.04034012131751297
HLSLLVLHQQ	10	Unmodified	_HLSLLVLHQQ_					0	0	0			REV__nc|ENSG00000160271|Q12967-2|RALGDS	REV__nc|ENSG00000160271|Q12967-2|RALGDS	MSMS	HCT116MG_D190212_S1	1	594.320556640625	2	594.348397	1186.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.86	1	52.86	52.36	53.36	0								0	0	0	0.86471	1	20229	20229		20.454	5.2051	1		+		14126	17182	8485	8532	13576	13576					0.09636785042653173
HLSLRWPATPR	11	Unmodified	_HLSLRWPATPR_					0	0	0		MED1|p.S616Lfs*31|1|0.21|ENSG00000125686|chr17:39410376-39410376|C/-|frameshift_variant	MED1|p.S616Lfs*31|1|0.21|ENSG00000125686|chr17:39410376-39410376|C/-|frameshift_variant	MED1|p.S616Lfs*31|1|0.21|ENSG00000125686|chr17:39410376-39410376|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	667.3411254882812	2	667.37802	1332.74149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.726	1	25.356	24.856	25.856	-0.36914								0	0	0	0.94416	1	9277	9277		9.3831	0	1				14127	9324	8486	8533	13577	13577					0.08842681056808033
HLSRRWRNKRY	11	Unmodified	_HLSRRWRNKRY_					0	0	0		MMP24|p.R151W|1|0.63|ENSG00000125966|chr20:35251960-35251960|C/T|missense_variant	MMP24|p.R151W|1|0.63|ENSG00000125966|chr20:35251960-35251960|C/T|missense_variant	MMP24|p.R151W|1|0.63|ENSG00000125966|chr20:35251960-35251960|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	786.4406127929688	2	786.442549	1570.87055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.882	1	44.797	44.297	45.297	-0.084797								0	0	0	0.95731	1	17055	17055		2.4985	1.3051	1				14128	9335	8487	8534	13578	13578					0.10794455739642217
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	520.812744140625	2	520.310949	1038.60735	0.51782	0.00026943	0.054696	2.8459E-05	0.57252	0.00029789	520.3108960520785	41.893	0.20892	41.893	41.81	42.019	0					7	3	3	0	0	0	0.0082095	1	15812	15812		117.76	60.039	1	16868000			14129	1158	8488	8535	13579	13579					0.08958602511438585
HLTDTSHGV	9	Unmodified	_HLTDTSHGV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	HCT116MG_D190212_S2	2	484.20941162109375	2	483.735606	965.456658	0.086119	4.1659E-05	-2.2258	-0.0010767	-2.1397	-0.001035	483.7338686338647	20.271	0.36412	19.891	19.605	19.969	-0.37949					13	6	3	0	0	0	0.32162	1	7094	7094		28.487	3.0875	1	6826100			14130	4050	8489	8536	13580	13580					-0.027451641473703603
HLTKIKKTKF	10	Unmodified	_HLTKIKKTKF_					0	0	0			REV__ENSG00000109805|ENST00000251496|NCAPG	REV__ENSG00000109805|ENST00000251496|NCAPG	MSMS	HCT116MG_D190212_S2	2	622.4019775390625	2	622.39789	1242.78123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.213	1	41.145	40.645	41.645	-0.068199								0	0	0	0.96291	1	15565	15565		1.8442	0.19162	1		+		14131	11382	8490	8537	13581	13581					0.16954808007540123
HLTNSDKYT	9	Unmodified	_HLTNSDKYT_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MSMS	HCT116MG_D190212_S1	1	360.1762390136719	3	360.176972	1077.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.41	1	23.41	22.91	23.91	0								0	0	0	0.7689	1	8335	8335		2.7352	0.23671	1		+		14132	12835	8491	8538	13582	13582					-0.02656625804434043
HLVANKWIF	9	Unmodified	_HLVANKWIF_					0	0	0		tr|U7SXY0|U7SXY0_FUSNURibosomematurationfactorRimMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimMPE=3SV=1	tr|U7SXY0|U7SXY0_FUSNURibosomematurationfactorRimMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimMPE=3SV=1	tr|U7SXY0|U7SXY0_FUSNURibosomematurationfactorRimMOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimMPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	564.3224487304688	2	564.321651	1126.62875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.465	1	33.082	32.582	33.582	-0.38223								0	0	0	0.7676	1	12183	12183		9.3474	0.75416	1				14133	18514	8492	8539	13583	13583					0.0705003233078969
HLVPEVPTV	9	Unmodified	_HLVPEVPTV_					0	0	0		ZBTB7B|p.G247Afs*68|1|0.33|ENSG00000160685|chr1:155015396-155015396|G/-|frameshift_variant;ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B	ZBTB7B|p.G247Afs*68|1|0.33|ENSG00000160685|chr1:155015396-155015396|G/-|frameshift_variant	ZBTB7B|p.G247Afs*68|1|0.33|ENSG00000160685|chr1:155015396-155015396|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	496.3040771484375	2	495.784567	989.554582	0.26628	0.00013202	0.40076	0.00019869	0.66704	0.00033071	495.7846818660259	42.959	0.26024	42.959	42.847	43.108	0					8	4	2	0	0	0	0.023479	1	16220	16220		67.344	38.857	1	5464800			14134	4458	8493	8540	13584	13584					0.0593864444861083
HLVQNIYTYKM	11	Unmodified	_HLVQNIYTYKM_					0	0	0			REV__ENST00000382004.7_1_9:3221866-3221968:-|nuORF	REV__ENST00000382004.7_1_9:3221866-3221968:-|nuORF	MSMS	HCT116MG_D190212_S3	3	705.3688354492188	2	705.36593	1408.71731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.777	1	42.473	41.973	42.973	-0.30451								0	0	0	0.95196	1	15946	15946		5.2969	2.5617	1		+		14135	15288	8494	8541	13585	13585					0.029296597882876085
HLVQNIYTYKM	11	Unmodified	_HLVQNIYTYKM_					0	0	0			REV__ENST00000382004.7_1_9:3221866-3221968:-|nuORF	REV__ENST00000382004.7_1_9:3221866-3221968:-|nuORF	MSMS	HCT116MG_D190212_S4	4	705.3689575195312	2	705.36593	1408.71731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.726	1	42.351	41.851	42.851	-0.37493								0	0	0	0.95686	1	15714	15714		2.7352	0.23671	1		+		14136	15288	8494	8541	13586	13586					0.029296597882876085
HLVRFILPKER	11	Unmodified	_HLVRFILPKER_					0	0	0		ENST00000272849.7_2_2:206642940-206643144:+|nuORF	ENST00000272849.7_2_2:206642940-206643144:+|nuORF	ENST00000272849.7_2_2:206642940-206643144:+|nuORF	MSMS	HCT116MG_D190212_S3	3	704.4343872070312	2	704.432796	1406.85104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.821	1	57.547	57.047	58.047	-0.27434								0	0	0	0.95196	1	21982	21982		5.2969	0	1				14137	6924	8495	8542	13587	13587					0.16388686676168618
HLWIKLFPPIP	11	Unmodified	_HLWIKLFPPIP_					0	0	0		nc|ENSG00000091181|Q01344-5|IL5RA;ENSG00000091181|ENST00000446632|IL5RA	nc|ENSG00000091181|Q01344-5|IL5RA	nc|ENSG00000091181|Q01344-5|IL5RA	MSMS	HCT116MG_D190212_S4	4	680.9113159179688	2	680.910633	1359.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.71	1	44.337	43.837	44.837	-0.37326								0	0	0	0.96111	1	16480	16480		0.35063	0	1				14138	1558	8496	8543	13588	13588					0.14120282529984252
HLWLQSKHRFH	11	Unmodified	_HLWLQSKHRFH_					0	0	0			REV__BCL6B|p.R456W|1|0.27|ENSG00000161940|chr17:7027545-7027545|C/T|missense_variant	REV__BCL6B|p.R456W|1|0.27|ENSG00000161940|chr17:7027545-7027545|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	744.89990234375	2	744.902194	1487.78984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.537	1	41.161	40.661	41.661	-0.37637								0	0	0	0.31808	1	15248	15248		57.722	13.74	1		+		14139	10037	8497	8544	13589	13589					0.06545174696702816
HLWLSRLRVL	10	Unmodified	_HLWLSRLRVL_					0	0	0		ENST00000371711.4_1_20:48251667-48252051:-|nuORF	ENST00000371711.4_1_20:48251667-48252051:-|nuORF	ENST00000371711.4_1_20:48251667-48252051:-|nuORF	MSMS	HCT116MG_D190212_S1	1	646.8994750976562	2	646.901131	1291.78771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.213	1	45.213	44.713	45.713	0								0	0	0	0.95179	1	17125	17125		4.3292	0.73274	1				14140	7443	8498	8545	13590	13590					0.15348745958908694
HLWNSIHGL	9	Unmodified	_HLWNSIHGL_					0	0	0		NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant;NBR1|p.L746Wfs*50|1|0.23|ENSG00000188554|chr17:43200372-43200372|C/-|frameshift_variant;nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant	NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	538.8341674804688	2	538.785433	1075.55631	0.38253	0.0002061	-0.34411	-0.0001854	0.038427	2.0704E-05	539.2863213566601	44.063	0.35928	43.984	43.762	44.121	-0.078373					17	6	3	0	0	0	0.040372	2	16681	16681;16705		96.367	44.098	1	22650000			14141	5989	8499	8546	13591;13592	13591					0.021556982572292327
HLWVKLRNML	10	Unmodified	_HLWVKLRNML_					0	0	0		ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	437.59197998046875	3	437.256904	1308.74888	0.28341	0.00012392	0.68584	0.00029989	0.96925	0.00042381	437.2570919467174	53.085	1.8743	52.75	52.202	54.077	-0.33473					69	35	3	0	0	0	0.89248	2	19747	19747;19982		0.77653	0.77653	1	7151900			14142	8201	8500	8547	13593;13594	13593					0.10685697332905875
HLWVKLRNML	10	Unmodified	_HLWVKLRNML_					0	0	0		ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	437.256904	1308.74888	0.063711	2.7858E-05	0.8021	0.00035072	0.86581	0.00037858	437.2571658662052	52.926	2.2181	52.736	51.778	53.996	-0.18922	-0.0070458	5.3249E-05	NaN	0.77653	98	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37034000			14143	8201	8500	8547							0.10685697332905875
HLWYREQP	8	Unmodified	_HLWYREQP_					0	0	0		EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;EPG5|p.Y1902Ifs*26|3|0.23|ENSG00000152223|chr18:45879178-45879178|A/-|frameshift_variant;EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant;ENST00000585906.5_1_18:43437816-43497657:-|nuORF	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	564.3590698242188	2	564.78289	1127.55123	0.25805	0.00014574	1.1643	0.00065759	1.4224	0.00080333	565.286607469627	40.207	0.20849	39.905	39.799	40.007	-0.30137					5	3	2	0	0	0	0.33574	1	14929	14929		0.79363	0	1	3572200			14144	4139	8501	8548	13595	13595					-0.007446056053822758
HLYDYTVKL	9	Unmodified	_HLYDYTVKL_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-4|HIP1;nc|ENSG00000127946|O00291-3|HIP1	ENSG00000127946|ENST00000336926|HIP1	ENSG00000127946|ENST00000336926|HIP1	MSMS	HCT116MG_D190212_S2	2	576.3082885742188	2	576.308406	1150.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.853	1	42.783	42.283	43.283	-0.069984								0	0	0	0.025932	1	16231	16231		86.332	46.382	1				14145	2981	8502	8549	13596	13596					0.032982986488150345
HLYEDLFRA	9	Unmodified	_HLYEDLFRA_					0	0	0		nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145667587-145667875:-|nuORF	nc|ENSG00000160949|Q96HA7-2|TONSL	nc|ENSG00000160949|Q96HA7-2|TONSL	MULTI-MSMS	HCT116MG_D190212_S2	2	582.2959594726562	2	582.29583	1162.57711	0.50512	0.00029413	-0.28743	-0.00016737	0.21769	0.00012676	582.2957408460476	45.304	0.36203	45.212	45.049	45.411	-0.092472					13	6	3	0	0	0	0.0201	2	17237	17237;17240		96.367	46.434	1	33042000			14146	4470	8503	8550	13597;13598	13597					0.002322438462442733
HMHHFALNP	9	Unmodified	_HMHHFALNP_					0	0	0		nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-MSMS	HCT116MG_D190212_S3	3	552.2628173828125	2	552.26381	1102.51307	0.30362	0.00016768	-0.8593	-0.00047456	-0.55568	-0.00030688	552.2634651390462	34.81	0.98662	34.513	33.869	34.855	-0.29707					27	18	2	0	0	0	0.59184	1	12736	12736		11.64	0	1	4504600			14147	1515	8504	8551	13599	13599					-0.03408814791714576
HMHHFALNP	9	Unmodified	_HMHHFALNP_					0	0	0		nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-MSMS	HCT116MG_D190212_S4	4	552.2625732421875	2	552.26381	1102.51307	0.46188	0.00025508	-1.0688	-0.00059024	-0.60688	-0.00033516	552.2632771565593	34.771	1.1791	34.385	33.827	35.006	-0.38605					34	22	2	0	0	0	0.57626	1	12726	12726		12.532	0	1	5300400			14148	1515	8504	8551	13600	13600					-0.03408814791714576
HMHHFALNP	9	Unmodified	_HMHHFALNP_					0	0	0		nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	552.26381	1102.51307	0.30362	0.00016768	-0.8593	-0.00047456	-0.55568	-0.00030688	552.2634651390462	34.81	0.98662	34.513	33.869	34.855	-0.29707	0.064031	9.9244E-05	NaN	11.64	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4504600			14149	1515	8504	8551							-0.03408814791714576
HMKYSILPDYY	11	Unmodified	_HMKYSILPDYY_					0	0	0		ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF;ENSG00000186889|ENST00000335390|TMEM17	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	477.2320251464844	3	477.232201	1428.67477	0.17982	8.5814E-05	-0.52094	-0.00024861	-0.34113	-0.0001628	477.5664365745016	15.76	0.46853	15.845	15.665	16.133	0.085423					18	8	4	0	0	0	0.72755	1	5185	5185		11.631	11.631	1	6387800			14150	5915	8505	8552	13601	13601					-0.02241735339907791
HMKYSILPDYY	11	Unmodified	_HMKYSILPDYY_					0	0	0		ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF;ENSG00000186889|ENST00000335390|TMEM17	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	477.2431640625	3	477.232201	1428.67477	-0.15459	-7.3775E-05	-0.097189	-4.6382E-05	-0.25178	-0.00012016	477.23181560216346	16.107	0.45507	15.943	15.667	16.122	-0.16364					17	8	3	0	0	0	0.74191	1	5240	5240		4.1166	4.1166	1	1635200			14151	5915	8505	8552	13602	13602					-0.02241735339907791
HMKYSILPDYY	11	Unmodified	_HMKYSILPDYY_					0	0	0		ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF;ENSG00000186889|ENST00000335390|TMEM17	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	477.232201	1428.67477	0.17982	8.5814E-05	-0.52094	-0.00024861	-0.34113	-0.0001628	477.5664365745016	15.76	0.46853	15.845	15.665	16.133	0.085423	-0.048826	-0.00015988	NaN	11.631	18	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6387800			14152	5915	8505	8552							-0.02241735339907791
HMKYSILPDYY	11	Unmodified	_HMKYSILPDYY_					0	0	0		ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF;ENSG00000186889|ENST00000335390|TMEM17	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	477.232201	1428.67477	-0.15459	-7.3775E-05	-0.097189	-4.6382E-05	-0.25178	-0.00012016	477.23181560216346	16.107	0.45507	15.943	15.667	16.122	-0.16364	0.048826	0.00044681	NaN	11.631	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1635200			14153	5915	8505	8552							-0.02241735339907791
HMMTPFMG	8	Unmodified	_HMMTPFMG_					0	0	0		AUTS2|p.R1044H|1|0.32|ENSG00000158321|chr7:70790347-70790347|G/A|missense_variant	AUTS2|p.R1044H|1|0.32|ENSG00000158321|chr7:70790347-70790347|G/A|missense_variant	AUTS2|p.R1044H|1|0.32|ENSG00000158321|chr7:70790347-70790347|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	476.1985778808594	2	476.197902	950.38125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1387	1	1.1387	0.63869	1.6387	0								0	0	0	0.8837	1	342	342		0.79363	0	1				14154	236	8506	8553	13603	13603					-0.09592504195302354
HMMTPFMG	8	Unmodified	_HMMTPFMG_					0	0	0		AUTS2|p.R1044H|1|0.32|ENSG00000158321|chr7:70790347-70790347|G/A|missense_variant	AUTS2|p.R1044H|1|0.32|ENSG00000158321|chr7:70790347-70790347|G/A|missense_variant	AUTS2|p.R1044H|1|0.32|ENSG00000158321|chr7:70790347-70790347|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	476.1985168457031	2	476.197902	950.38125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.714	1	64.602	64.102	65.102	-0.11256								0	0	0	0.8837	1	25021	25021		0.79363	0	1				14155	236	8506	8553	13604	13604					-0.09592504195302354
HMRITEQFES	10	Unmodified	_HMRITEQFES_					0	0	0		SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant;SNX13|p.K644Rfs*3|1|0.23|ENSG00000071189|chr7:17816204-17816204|T/-|frameshift_variant;SNX13|p.F741Lfs*6|1|0.38|ENSG00000071189|chr7:17803422-17803422|A/-|frameshift_variant;SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant	SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	639.3021240234375	2	639.300787	1276.58702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.493	1	47.123	46.623	47.623	-0.37038								0	0	0	0.94551	1	17566	17566		5.7319	0.43497	1				14156	1250	8507	8554	13605	13605					-0.040209362106907065
HMRKRYAEDC	10	Unmodified	_HMRKRYAEDC_					0	0	0			REV__ENSG00000146090|ENST00000361132|RASGEF1C	REV__ENSG00000146090|ENST00000361132|RASGEF1C	MSMS	HCT116MG_D190212_S1	1	436.8701477050781	3	436.86938	1307.58631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.761	1	13.761	13.261	14.261	0								0	0	0	0.97054	1	4478	4478		0.13989	0	1		+		14157	12473	8508	8555	13606	13606					-0.05518054131380268
HMSGKLTNV	9	Unmodified	_HMSGKLTNV_					0	0	0		PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant;ENSG00000068489|ENST00000262293|PRR11	PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant	PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7580261230469	2	493.758027	985.5015	0.35626	0.00017591	0.055341	2.7325E-05	0.4116	0.00020323	493.7579851546069	24.888	0.25899	24.512	24.349	24.608	-0.37521					9	4	3	0	0	0	0.011034	1	8953	8953		110.79	58.524	1	26198000			14158	1203	8509	8556	13607	13607					0.008169433942839532
HMSGKLTNV	9	Unmodified	_HMSGKLTNV_					0	0	0		PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant;ENSG00000068489|ENST00000262293|PRR11	PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant	PRR11|p.D222Mfs*6|1|0.37|ENSG00000068489|chr17:59194768-59194768|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	493.758027	985.5015	0.45045	0.00022241	0.036905	1.8222E-05	0.48735	0.00024063	493.75787892985585	24.281	0.20966	24.281	24.15	24.36	0	-0.1156	-1.4965E-05	NaN	110.79	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5143500			14159	1203	8509	8556							0.008169433942839532
HMWHFKRQHHW	11	Unmodified	_HMWHFKRQHHW_					0	0	0		ENST00000367495.3_1_6:146875744-146875882:+|nuORF	ENST00000367495.3_1_6:146875744-146875882:+|nuORF	ENST00000367495.3_1_6:146875744-146875882:+|nuORF	MSMS	HCT116MG_D190212_S4	4	815.390380859375	2	815.391471	1628.76839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.166	1	17.991	17.491	18.491	-0.17501								0	0	0	0.95581	1	6078	6078		3.2813	1.7994	1				14160	7388	8510	8557	13608	13608					-0.0208453360362455
HNDICAICYQD	11	Unmodified	_HNDICAICYQD_					0	0	0		nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;RNF145|p.T570Sfs*23|1|0.07|ENSG00000145860|chr5:159158953-159158954|-/AGCATAC|frameshift_variant;ENSG00000145860|ENST00000424310|RNF145	nc|ENSG00000145860|Q96MT1-4|RNF145	nc|ENSG00000145860|Q96MT1-4|RNF145	MULTI-MSMS	HCT116MG_D190212_S2	2	647.7648315429688	2	647.76318	1293.51181	0.56034	0.00036297	1.85	0.0011984	2.4104	0.0015614	647.764792778132	18.136	0.20867	17.78	17.65	17.858	-0.35647					7	3	3	0	0	0	0.6626	1	6222	6222		28.495	11.382	1	11859000			14161	9490	8511	8558	13609	13609					-0.12320861733451238
HNIEIEYVPRK	11	Unmodified	_HNIEIEYVPRK_					0	0	0		nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-MSMS	HCT116MG_D190212_S1	1	466.9239196777344	3	466.589376	1396.7463	0.26449	0.00012341	-0.14096	-6.5769E-05	0.12353	5.764E-05	466.5892956186578	45.581	0.20898	45.581	45.451	45.66	0					8	3	3	0	0	0	0.72218	1	17292	17292		7.846	4.2534	1	14461000			14162	5092	8512	8559	13610	13610					0.0637952040892742
HNKKKLGQVS	10	Unmodified	_HNKKKLGQVS_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.615424572808221|0.2447948664736123|3.88|483.0|36|1|anti-sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.615424572808221|0.2447948664736123|3.88|483.0|36|1|anti-sense	MSMS	HCT116MG_D190212_S2	2	380.22760009765625	3	380.22789	1137.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.839	1	59.679	59.179	60.179	-0.16012								0	0	0	0.96337	1	23146	23146		1.7423	1.0446	1		+		14163	16995	8513	8560	13611	13611					0.09851614382841944
HNKKKLGQVS	10	Unmodified	_HNKKKLGQVS_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.615424572808221|0.2447948664736123|3.88|483.0|36|1|anti-sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.615424572808221|0.2447948664736123|3.88|483.0|36|1|anti-sense	MSMS	HCT116MG_D190212_S4	4	380.22760009765625	3	380.22789	1137.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.92	1	57.631	57.131	58.131	-0.28879								0	0	0	0.96337	1	21754	21754		1.7423	0.67081	1		+		14164	16995	8513	8560	13612	13612					0.09851614382841944
HNLKKLFKW	9	Unmodified	_HNLKKLFKW_					0	0	0			REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF	REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF	MSMS	HCT116MG_D190212_S2	2	405.2458190917969	3	405.244992	1212.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.846	1	47.713	47.213	48.213	-0.13281								0	0	0	0.77008	1	18262	18262		0.26902	0.1097	1		+		14165	15237	8514	8561	13613	13613					0.11529983147556777
HNMCGDYLY	9	Unmodified	_HNMCGDYLY_					0	0	0		ENSG00000198964|ENST00000361781|SGMS1;nc|ENSG00000198964|Q86VZ5-2|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	MSMS	HCT116MG_D190212_S3	3	557.8095092773438	2	558.217877	1114.4212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.281	1	36.98	36.48	37.48	-0.30137								0	0	0	0.76718	1	13804	13804		10.824	1.4765	1				14166	6309	8515	8562	13614	13614					-0.13143285991031917
HNVQGFHPYR	10	Unmodified	_HNVQGFHPYR_					0	0	0		ENSG00000071626|ENST00000233078|DAZAP1;ENST00000589874.2_1_19:1434656-1434908:+|nuORF	ENSG00000071626|ENST00000233078|DAZAP1	ENSG00000071626|ENST00000233078|DAZAP1	MULTI-SECPEP	HCT116MG_D190212_S1	1	419.2323303222656	3	418.875739	1253.60539	-0.062043	-2.5988E-05	0.47109	0.00019733	0.40905	0.00017134	418.87595916321027	23.184	0.31236	23.184	22.949	23.262	0					7	5	2	0	0	0	0.3093	1	8264	8264		5.4027	1.8157	1	1971100			14167	1257	8516	8563	13615	13615					-0.011270134538335697
HPAAAPAG	8	Unmodified	_HPAAAPAG_					0	0	0		nc|ENSG00000164591|Q8TDC0-2|MYOZ3;ENSG00000164591|ENST00000517768|MYOZ3	nc|ENSG00000164591|Q8TDC0-2|MYOZ3	nc|ENSG00000164591|Q8TDC0-2|MYOZ3	MULTI-MSMS	HCT116MG_D190212_S3	3	691.3524169921875	1	691.3522	690.344923	0.84919	0.00058709	-0.017289	-1.1953E-05	0.8319	0.00057514	691.3519962296508	19.768	0.20835	19.828	19.698	19.907	0.05983					6	3	2	0	0	0	0.75115	1	6808	6808		17.087	0	1	2918800			14168	4706	8517	8564	13616	13616					-0.0126355371386353
HPALPAMV	8	Unmodified	_HPALPAMV_					0	0	0		ENST00000537604.5_1_11:62470012-62473438:-|nuORF;ENSG00000168000|ENST00000360796|BSCL2	ENST00000537604.5_1_11:62470012-62473438:-|nuORF	ENST00000537604.5_1_11:62470012-62473438:-|nuORF	MSMS	HCT116MG_D190212_S1	1	417.75775146484375	2	418.228374	834.442194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.713	1	28.713	28.213	29.213	0								0	0	0	0.8837	1	10468	10468		11.114	4.7604	1				14169	4972	8518	8565	13617	13617					0.018350921707792622
HPCLSMTL	8	Unmodified	_HPCLSMTL_					0	0	0		GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	451.2173767089844	2	451.217149	900.419744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.503	1	34.503	34.003	35.003	0								0	0	0	0.8837	1	12804	12804		10.183	1.5901	1				14170	9198	8519	8566	13618	13618					-0.03444875289130778
HPDAGGPLP	9	Unmodified	_HPDAGGPLP_					0	0	0			REV__ENST00000495234.5_1_9:136295294-136298568:+|nuORF	REV__ENST00000495234.5_1_9:136295294-136298568:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	430.716552734375	2	430.716685	859.418816	0.24275	0.00010456	0.038354	1.652E-05	0.2811	0.00012107	430.71644230887523	41.339	0.31243	41.339	41.237	41.55	0					10	5	3	0	0	0	0.64512	1	15594	15594		8.5933	2.2392	1	5661100	+		14171	15169	8520	8567	13619	13619					-0.016516303421894918
HPDAGGPLP	9	Unmodified	_HPDAGGPLP_					0	0	0			REV__ENST00000495234.5_1_9:136295294-136298568:+|nuORF	REV__ENST00000495234.5_1_9:136295294-136298568:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	430.716685	859.418816	0.24275	0.00010456	0.038354	1.652E-05	0.2811	0.00012107	430.71644230887523	41.339	0.31243	41.339	41.237	41.55	0	0	0	NaN	8.5933	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5661100	+		14172	15169	8520	8567							-0.016516303421894918
HPDYSVVLLLR	11	Unmodified	_HPDYSVVLLLR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	656.3744506835938	2	656.374612	1310.73467	0.66143	0.00043415	-0.23604	-0.00015493	0.4254	0.00027922	656.3743826188373	51.8	0.35828	51.491	51.332	51.69	-0.30927					10	6	2	0	0	0	2.5549E-05	1	19562	19562		166.77	117.21	1	7020500		+	14173	554	8521	8568	13620	13620					0.09173323385607546
HPDYSVVLLLR	11	Unmodified	_HPDYSVVLLLR_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S4	4	656.3744506835938	2	656.374612	1310.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.905	1	51.559	51.059	52.059	-0.34538								0	0	0	0.039037	1	19332	19332		88.364	61.14	1			+	14174	554	8521	8568	13621	13621					0.09173323385607546
HPELLAKKRGT	11	Unmodified	_HPELLAKKRGT_					0	0	0		ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	MSMS	HCT116MG_D190212_S4	4	624.98095703125	2	625.372404	1248.73025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.893	1	42.518	42.018	43.018	-0.37493								0	0	0	0.95113	1	15782	15782		5.7319	0.83484	1				14175	1633	8522	8569	13622	13622					0.11583858962671911
HPEQVILRVN	10	Unmodified	_HPEQVILRVN_					0	0	0		nc|ENSG00000109944|Q6NUN7-2|JHY	nc|ENSG00000109944|Q6NUN7-2|JHY	nc|ENSG00000109944|Q6NUN7-2|JHY	MSMS	HCT116MG_D190212_S1	1	402.2327880859375	3	402.231412	1203.67241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.075	1	30.075	29.575	30.575	0								0	0	0	0.95351	1	11017	11017		1.9064	0	1				14176	9420	8523	8570	13623	13623					0.07871597037296851
HPFAVFQK	8	Unmodified	_HPFAVFQK_					0	0	0			REV__ENST00000512880.5_1_5:68513659-68513734:+|nuORF	REV__ENST00000512880.5_1_5:68513659-68513734:+|nuORF	MSMS	HCT116MG_D190212_S2	2	487.26678466796875	2	487.266345	972.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.321	1	12.031	11.531	12.531	-0.28953								0	0	0	0.8837	1	4023	4023		2.3027	0	1		+		14177	16192	8524	8571	13624	13624					0.03077812342564812
HPFFKEIDWV	10	Unmodified	_HPFFKEIDWV_					0	0	0		ENST00000494472.1_1_2:46378245-46386996:+|nuORF;ENSG00000171132|ENST00000306156|PRKCE	ENST00000494472.1_1_2:46378245-46386996:+|nuORF	ENST00000494472.1_1_2:46378245-46386996:+|nuORF	MSMS	HCT116MG_D190212_S1	1	439.8934020996094	3	439.892396	1316.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.036	1	15.036	14.536	15.536	0								0	0	0	0.96291	1	4967	4967		0.77653	0	1				14178	5177	8525	8572	13625	13625					0.009696764314412576
HPGAAFTC	8	Unmodified	_HPGAAFTC_					0	0	0		ENST00000481757.5_1_2:241513732-241514263:+|nuORF	ENST00000481757.5_1_2:241513732-241514263:+|nuORF	ENST00000481757.5_1_2:241513732-241514263:+|nuORF	MSMS	HCT116MG_D190212_S2	2	402.1798095703125	2	402.178881	802.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9571	1	3.868	3.368	4.368	-0.089082								0	0	0	0.8837	1	1256	1256		0.69038	0.69038	1				14179	8253	8526	8573	13626	13626					-0.0658693079412842
HPGRASRD	8	Unmodified	_HPGRASRD_					0	0	0		ENST00000481918.1_1_1:213188783-213188822:-|nuORF	ENST00000481918.1_1_1:213188783-213188822:-|nuORF	ENST00000481918.1_1_1:213188783-213188822:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	448.22784423828125	2	448.228282	894.442011	-0.0057248	-2.566E-06	-1.015	-0.00045493	-1.0207	-0.0004575	448.2277928298748	42.109	0.36424	42.109	41.914	42.278	0					9	6	2	0	0	0	0.8506	1	15905	15905		5.2307	0	1	8371600			14180	8257	8527	8574	13627	13627					-0.00943191504859442
HPGSVPVI	8	Unmodified	_HPGSVPVI_					0	0	0		SPEN|p.M2790V|1|0.26|ENSG00000065526|chr1:15934608-15934608|A/G|missense_variant	SPEN|p.M2790V|1|0.26|ENSG00000065526|chr1:15934608-15934608|A/G|missense_variant	SPEN|p.M2790V|1|0.26|ENSG00000065526|chr1:15934608-15934608|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	403.2323303222656	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.70456	1	0.70456	0.20456	1.2046	0								0	0	0	0.8837	1	223	223		0.79363	0	1				14181	18228	8528	8575	13628	13628					0.03934148042867491
HPHAPAERGGP	11	Unmodified	_HPHAPAERGGP_					0	0	0			REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	563.2806396484375	2	563.281046	1124.54754	0.29255	0.00016479	-0.63096	-0.00035541	-0.33841	-0.00019062	563.2805722361867	18.792	0.41707	18.792	18.662	19.079	0					10	7	2	0	0	0	0.60935	1	6490	6490		34.402	2.3642	1	4394200	+		14182	16252	8529	8576	13629	13629					-0.009752753792554358
HPKAGGGP	8	Unmodified	_HPKAGGGP_					0	0	0			REV__ENST00000573886.5_1_17:4620541-4621453:+|nuORF	REV__ENST00000573886.5_1_17:4620541-4621453:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	360.692626953125	2	360.693013	719.371472	-0.30941	-0.0001116	-0.026725	-9.6396E-06	-0.33614	-0.00012124	360.6929567283483	14.861	0.36495	14.541	14.296	14.661	-0.31952					11	6	2	0	0	0	0.86564	1	4881	4881		2.5775	0	1	2419700	+		14183	16585	8530	8577	13630	13630					0.0005613517746496655
HPKIRRQIE	9	Unmodified	_HPKIRRQIE_					0	0	0		nc|ENSG00000102802|Q5VYS4-2|MEDAG;ENSG00000102802|ENST00000380482|MEDAG	nc|ENSG00000102802|Q5VYS4-2|MEDAG	nc|ENSG00000102802|Q5VYS4-2|MEDAG	MULTI-MSMS	HCT116MG_D190212_S1	1	588.8507080078125	2	588.851638	1175.68872	0.7136	0.00042021	-0.76923	-0.00045296	-0.055625	-3.2755E-05	588.8508912255729	53.59	0.61847	53.59	53.153	53.771	0					26	11	4	0	0	0	0.71058	1	20514	20514		7.2892	0.56607	1	277380000			14184	1852	8531	8578	13631	13631					0.10790722994033786
HPKLSGLKV	9	Unmodified	_HPKLSGLKV_					0	0	0			REV__FLVCR2|p.S281Afs*6|1|0.34|ENSG00000119686|chr14:75624635-75624635|C/-|frameshift_variant	REV__FLVCR2|p.S281Afs*6|1|0.34|ENSG00000119686|chr14:75624635-75624635|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	489.8083801269531	2	489.808377	977.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.939	1	36.824	36.324	37.324	-0.11478								0	0	0	0.76849	1	13830	13830		6.2058	0.47393	1		+		14185	11664	8532	8579	13632	13632					0.11250343439473909
HPLHLLVLHPH	11	Unmodified	_HPLHLLVLHPH_					0	0	0			REV__ENST00000585043.5_1_17:38375734-38416808:+|nuORF	REV__ENST00000585043.5_1_17:38375734-38416808:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	657.3861083984375	2	656.885481	1311.75641	0.73344	0.00048179	-0.80443	-0.00052842	-0.070986	-4.663E-05	657.38549434297	52.36	1.9583	52.36	51.4	53.359	0					102	37	5	0	0	0	0.74084	1	20088	20088		6.7232	0	1	109310000	+		14186	16635	8533	8580	13633	13633					0.11300172924825347
HPLKPAFINL	10	Unmodified	_HPLKPAFINL_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-MSMS	HCT116MG_D190212_S1	1	576.345703125	2	575.342584	1148.67061	0.36361	0.0002092	3.1827	0.0018312	3.5463	0.0020404	575.3456473346832	51.961	1.3936	51.961	51.4	52.794	0					38	26	3	0	0	0	0.87801	1	20106	20106		3.9444	0.3479	1	31299000	+		14187	13414	8534	8581	13634	13634					0.10222588019337309
HPLPRVFP	8	Unmodified	_HPLPRVFP_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant;REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	481.2796936035156	2	481.782162	961.549771	0.25583	0.00012325	1.5785	0.0007605	1.8343	0.00088375	481.7822029846469	45.704	0.73137	45.704	45.295	46.027	0					29	13	3	0	0	0	0.32917	1	17329	17329		2.8892	0	1	8988300	+		14188	12881;17016	8535	8582	13635	13635					0.06745805096522872
HPLPVILC	8	Unmodified	_HPLPVILC_					0	0	0		ENST00000560958.1_1_15:83395576-83395759:-|nuORF	ENST00000560958.1_1_15:83395576-83395759:-|nuORF	ENST00000560958.1_1_15:83395576-83395759:-|nuORF	MSMS	HCT116MG_D190212_S1	1	446.2597961425781	2	446.259674	890.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.874	1	32.874	32.374	33.374	0								0	0	0	0.8837	1	12146	12146		2.8892	0	1				14189	8812	8536	8583	13636	13636					0.05516238238976712
HPLPVILC	8	Unmodified	_HPLPVILC_					0	0	0		ENST00000560958.1_1_15:83395576-83395759:-|nuORF	ENST00000560958.1_1_15:83395576-83395759:-|nuORF	ENST00000560958.1_1_15:83395576-83395759:-|nuORF	MSMS	HCT116MG_D190212_S4	4	446.25994873046875	2	446.259674	890.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.26	1	32.878	32.378	33.378	-0.38223								0	0	0	0.8837	1	12110	12110		2.8892	0	1				14190	8812	8536	8583	13637	13637					0.05516238238976712
HPLRALTSL	9	Unmodified	_HPLRALTSL_					0	0	0			REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	504.3009033203125	2	504.303458	1006.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.979	1	39.979	39.479	40.479	0								0	0	0	0.76902	1	15013	15013		4.3292	0	1		+		14191	11183	8537	8584	13638	13638					0.08933155434078799
HPPHHHRPQP	10	Unmodified	_HPPHHHRPQP_					0	0	0		SKIDA1|p.G539Vfs*8|1|0.08|ENSG00000180592|chr10:21516207-21516208|-/TA|frameshift_variant;nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	SKIDA1|p.G539Vfs*8|1|0.08|ENSG00000180592|chr10:21516207-21516208|-/TA|frameshift_variant	SKIDA1|p.G539Vfs*8|1|0.08|ENSG00000180592|chr10:21516207-21516208|-/TA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	620.3134155273438	2	620.315755	1238.61696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.717	1	47.402	46.902	47.902	-0.31525								0	0	0	0.94107	1	17927	17927		6.7232	2.3939	1				14192	5604	8538	8585	13639	13639					0.007192283601625604
HPPPGAATY	9	Unmodified	_HPPPGAATY_					0	0	0		ENSG00000161640|ENST00000447370|SIGLEC11;nc|ENSG00000161640|Q96RL6-2|SIGLEC11	ENSG00000161640|ENST00000447370|SIGLEC11	ENSG00000161640|ENST00000447370|SIGLEC11	MULTI-MSMS	HCT116MG_D190212_S2	2	455.7247009277344	2	455.72451	909.434466	0.2847	0.00012975	-0.046319	-2.1109E-05	0.23838	0.00010864	455.72449764794675	40.408	0.25919	40.339	40.157	40.416	-0.069626					7	4	2	0	0	0	0.47829	1	15250	15250		18.135	1.1927	1	15038000			14193	4490	8539	8586	13640	13640					-0.0238734382515986
HPPRQSEIIK	10	Unmodified	_HPPRQSEIIK_					0	0	0			REV__ENSG00000164675|ENST00000324698|IQUB	REV__ENSG00000164675|ENST00000324698|IQUB	MSMS	HCT116MG_D190212_S3	3	402.2330627441406	3	402.231412	1203.67241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.533	1	30.283	29.783	30.783	-0.24946								0	0	0	0.95179	1	11122	11122		2.086	0.63089	1		+		14194	13017	8540	8587	13641	13641					0.07871597037274114
HPQQMIISRHL	11	Unmodified	_HPQQMIISRHL_					0	0	0		nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617|NPIPB3;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000254206|ENST00000698511|NPIPB11;ENSG00000185864|ENST00000682606|NPIPB4;ENST00000415654.1_16:22545826-22546048:+|nuORF	nc|ENSG00000169246|Q92617-5|NPIPB3	nc|ENSG00000169246|Q92617-5|NPIPB3	MSMS	HCT116MG_D190212_S4	4	680.3709716796875	2	680.369338	1358.72412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.876	1	45.504	45.004	46.004	-0.37206								0	0	0	0.95521	1	16939	16939		3.5965	0.31518	1				14195	5055	8541	8588	13642	13642					0.05911017459538925
HPQRQRRRRRQ	11	Unmodified	_HPQRQRRRRRQ_					0	0	0		ENST00000338745.10_3_3:18466531-18466693:-|nuORF;ENST00000450898.1_1_3:18465198-18466693:-|nuORF	ENST00000338745.10_3_3:18466531-18466693:-|nuORF	ENST00000338745.10_3_3:18466531-18466693:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	525.3104248046875	3	525.308823	1572.90464	0.46733	0.00024549	1.2762	0.00067041	1.7435	0.0009159	525.3093117530548	54.103	0.56258	54.103	53.72	54.282	0					18	10	2	0	0	0	0.74191	1	20670	20670		1.3296	1.2348	1	65539000			14196	7203	8542	8589	13643	13643					0.1411029695123034
HPRGLLHRW	9	Unmodified	_HPRGLLHRW_					0	0	0			REV__nc|ENSG00000146223|Q6DKI1-2|RPL7L1	REV__nc|ENSG00000146223|Q6DKI1-2|RPL7L1	MSMS	HCT116MG_D190212_S4	4	391.22515869140625	3	391.224703	1170.65228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.414	1	48.046	47.546	48.546	-0.36728								0	0	0	0.76967	1	17930	17930		1.0715	0.3738	1		+		14197	15797	8543	8590	13644	13644					0.07377890887960348
HPRLRVRCI	9	Unmodified	_HPRLRVRCI_					0	0	0			REV__ENSG00000104856|ENST00000221452|RELB	REV__ENSG00000104856|ENST00000221452|RELB	MULTI-MSMS	HCT116MG_D190212_S1	1	576.3464965820312	2	575.342926	1148.6713	0.36361	0.0002092	2.587	0.0014884	2.9506	0.0016976	575.3456473346832	51.961	1.3936	51.961	51.4	52.794	0					38	26	3	0	0	0	0.74258	1	20043	20043		2.3027	0	1	31299000	+		14198	11223	8544	8591	13645	13645					0.10291104187399469
HPRRLVPHAR	10	Unmodified	_HPRRLVPHAR_					0	0	0			REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF	REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	620.372314453125	2	619.870697	1237.72684	0.68206	0.00042279	-1.2154	-0.00075342	-0.53339	-0.00033063	620.3719657186539	53.696	1.6433	53.696	52.434	54.077	0					53	31	2	0	0	0	0.86339	1	20660	20660		6.7232	4.2247	1	38585000	+		14199	15380	8545	8592	13646	13646					0.11748653699328315
HPRRLVPHAR	10	Unmodified	_HPRRLVPHAR_					0	0	0			REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF	REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	619.870697	1237.72684	0.68206	0.00042279	-1.2154	-0.00075342	-0.53339	-0.00033063	620.3719657186539	53.696	1.6433	53.696	52.434	54.077	0	0.017377	6.41E-05	NaN	6.7232	53	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38585000	+		14200	15380	8545	8592							0.11748653699328315
HPRRLVPHAR	10	Unmodified	_HPRRLVPHAR_					0	0	0			REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF	REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	619.870697	1237.72684	0.53578	0.00033211	-1.3262	-0.0008221	-0.79046	-0.00048998	619.8696655269299	53.99	1.4062	53.661	53.197	54.603	-0.32923	-0.017377	-7.3255E-05	NaN	6.7232	34	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2756200	+		14201	15380	8545	8592							0.11748653699328315
HPSDEPVLS	9	Unmodified	_HPSDEPVLS_					0	0	0			REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant	REV__KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	490.2858581542969	2	490.737814	979.461075	0.033208	1.6296E-05	-0.10114	-4.9634E-05	-0.067934	-3.3338E-05	490.73770832669067	36.965	0.24861	36.58	36.435	36.684	-0.38486					6	4	2	0	0	0	0.26676	1	13563	13563		4.756	0	1	5156300	+		14202	14054	8546	8593	13647	13647					-0.02947699724472841
HPSLPLSHPP	10	Unmodified	_HPSLPLSHPP_					0	0	0		ENST00000558018.5_1_15:89442371-89442626:-|nuORF	ENST00000558018.5_1_15:89442371-89442626:-|nuORF	ENST00000558018.5_1_15:89442371-89442626:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	541.29296875	2	541.293091	1080.57163	0.42719	0.00023124	-0.034895	-1.8888E-05	0.3923	0.00021235	541.2930144805342	30.914	1.0326	30.647	30.199	31.232	-0.26704					31	19	3	0	0	0	0.34998	1	11376	11376		46.021	6.0636	1	52552000			14203	8800	8547	8594	13648	13648					0.03456565054420935
HPSLPLSHPP	10	Unmodified	_HPSLPLSHPP_					0	0	0		ENST00000558018.5_1_15:89442371-89442626:-|nuORF	ENST00000558018.5_1_15:89442371-89442626:-|nuORF	ENST00000558018.5_1_15:89442371-89442626:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	541.7723388671875	2	541.293091	1080.57163	0.36754	0.00019894	0.23152	0.00012532	0.59906	0.00032427	541.2931797696726	30.943	0.46943	30.682	30.5	30.97	-0.26071					15	8	2	0	0	0	0.23296	1	11295	11295		48.346	8.3885	1	7186600			14204	8800	8547	8594	13649	13649					0.03456565054420935
HPSNKSRLVLE	11	Unmodified	_HPSNKSRLVLE_					0	0	0			REV__ENST00000530991.5_1_11:8740001-8740307:-|nuORF	REV__ENST00000530991.5_1_11:8740001-8740307:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	640.3596801757812	2	640.359493	1278.70443	0.73352	0.00046972	-0.34038	-0.00021796	0.39314	0.00025175	640.861126533167	52.408	0.66889	52.408	52.073	52.742	0					18	12	2	0	0	0	0.74191	1	20064	20064		2.9952	0	1	15400000	+		14205	16315	8548	8595	13650	13650					0.07622964720439995
HPSPLAHD	8	Unmodified	_HPSPLAHD_					0	0	0			REV__ENST00000447501.5_1_7:56141874-56147121:+|nuORF	REV__ENST00000447501.5_1_7:56141874-56147121:+|nuORF	MSMS	HCT116MG_D190212_S3	3	437.2142333984375	2	437.214309	872.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.614	1	62.391	61.891	62.891	-0.22315								0	0	0	0.8837	1	23920	23920		2.5775	0	1		+		14206	15689	8549	8596	13651	13651					-0.02724514484964402
HPVFFWLKH	9	Unmodified	_HPVFFWLKH_					0	0	0		ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	MSMS	HCT116MG_D190212_S3	3	605.8314819335938	2	605.829643	1209.64473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.07	1	13.139	12.639	13.639	0.069158								0	0	0	0.77008	1	4122	4122		0.6015	0.076735	1				14207	5852	8550	8597	13652	13652					0.0482973856769604
HPVPRVKLLP	10	Unmodified	_HPVPRVKLLP_					0	0	0		ENST00000463769.6_1_22:40948169-40948301:-|nuORF	ENST00000463769.6_1_22:40948169-40948301:-|nuORF	ENST00000463769.6_1_22:40948169-40948301:-|nuORF	MSMS	HCT116MG_D190212_S4	4	578.3746948242188	2	578.371675	1154.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.184	1	39.805	39.305	40.305	-0.37904								0	0	0	0.95351	1	14733	14733		3.9444	2.1002	1				14208	8077	8551	8598	13653	13653					0.1576226966460581
HPVTVMRMP	9	Unmodified	_HPVTVMRMP_					0	0	0			REV__MVP|p.P55Hfs*69|1|0.36|ENSG00000013364|chr16:29830911-29830911|C/-|frameshift_variant	REV__MVP|p.P55Hfs*69|1|0.36|ENSG00000013364|chr16:29830911-29830911|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2777709960938	2	534.278072	1066.54159	0.48823	0.00026085	-2.5269	-0.00135	-2.0386	-0.0010892	534.2771460269612	39.251	0.21401	38.95	38.82	39.034	-0.30137					5	3	2	0	0	0	0.65706	1	14594	14594		7.9102	0.3012	1	6300800	+		14209	17045	8552	8599	13654	13654					0.010981667932355776
HPYKECTW	8	Unmodified	_HPYKECTW_					0	0	0			REV__ENSG00000173212|ENST00000369500|MAB21L3	REV__ENSG00000173212|ENST00000369500|MAB21L3	MSMS	HCT116MG_D190212_S4	4	355.1598815917969	3	355.160377	1062.4593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.999	1	29.642	29.142	30.142	-0.3571								0	0	0	0.8837	1	10857	10857		1.8442	0	1		+		14210	13424	8553	8600	13655	13655					-0.06943032014078199
HQARLGPSQDP	11	Unmodified	_HQARLGPSQDP_					0	0	0		ENST00000505686.5_1_5:123974904-123985368:-|nuORF	ENST00000505686.5_1_5:123974904-123985368:-|nuORF	ENST00000505686.5_1_5:123974904-123985368:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	603.9169311523438	2	603.304718	1204.59488	0.64095	0.00038669	-0.72065	-0.00043477	-0.079702	-4.8084E-05	603.3040097308136	42.266	0.20638	42.197	42.068	42.274	-0.068199					5	3	2	0	0	0	0.34567	1	15970	15970		14.405	0	1	17307000			14211	8452	8554	8601	13656	13656					0.0007695910110214754
HQCWSDEY	8	Unmodified	_HQCWSDEY_					0	0	0		SORL1|p.R1159W|1|0.41|ENSG00000137642|chr11:121577295-121577295|C/T|missense_variant	SORL1|p.R1159W|1|0.41|ENSG00000137642|chr11:121577295-121577295|C/T|missense_variant	SORL1|p.R1159W|1|0.41|ENSG00000137642|chr11:121577295-121577295|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	534.19873046875	2	534.197999	1066.38144	0.57786	0.00030869	0.52411	0.00027998	1.102	0.00058867	534.1981448646459	40.652	0.52054	40.35	40.111	40.632	-0.30161					16	9	3	0	0	0	0.79062	1	15119	15119		12.532	3.1841	1	17530000			14212	18185	8555	8602	13657	13657					-0.14909089670118192
HQGLLDRETW	10	Unmodified	_HQGLLDRETW_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant;EPPK1|p.Y695Ifs*68|1|0.36|ENSG00000261150|chr8:143871171-143871172|-/T|frameshift_variant;EPPK1|p.Q829Rfs*8|1|0.05|ENSG00000261150|chr8:143870770-143870770|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MSMS	HCT116MG_D190212_S2	2	627.8131103515625	2	627.814919	1253.61528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.992	1	10.718	10.218	11.218	-0.27365								0	0	0	0.96377	1	3515	3515		1.6526	0	1				14213	6627	8556	8603	13658	13658					-0.0013787023910936114
HQGLPQEV	8	Unmodified	_HQGLPQEV_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S1	1	454.2352600097656	2	454.235242	906.45593	0.15416	7.0023E-05	-0.3177	-0.00014431	-0.16354	-7.4287E-05	454.2351204847201	29.617	0.31254	29.617	29.373	29.685	0					6	5	2	0	0	0	0.21275	1	10852	10852		71.134	29.039	1	5595500		+	14214	548	8557	8604	13659	13659					-0.0010395879643283479
HQGYMHYFFSF	11	Unmodified	_HQGYMHYFFSF_					0	0	0			REV__ENST00000557516.1_1_14:47342591-47351346:-|nuORF	REV__ENST00000557516.1_1_14:47342591-47351346:-|nuORF	MSMS	HCT116MG_D190212_S2	2	732.3107299804688	2	732.313697	1462.61284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.938	1	10.664	10.164	11.164	-0.27365								0	0	0	0.95954	1	3494	3494		1.3295	0.9789	1		+		14215	12278	8558	8605	13660	13660					-0.09996041968429381
HQIDLIVQL	9	Unmodified	_HQIDLIVQL_					0	0	0		ENST00000472018.5_1_16:89760470-89762097:+|nuORF;ENST00000505733.5_1_16:89758861-89762180:+|nuORF;nc|ENSG00000185324|Q15131-4|CDK10;nc|ENSG00000185324|Q15131-3|CDK10;nc|ENSG00000185324|Q15131-7|CDK10;nc|ENSG00000185324|Q15131-2|CDK10;ENSG00000185324|ENST00000353379|CDK10	ENST00000472018.5_1_16:89760470-89762097:+|nuORF	ENST00000472018.5_1_16:89760470-89762097:+|nuORF	MSMS	HCT116MG_D190212_S1	1	539.8167114257812	2	539.816399	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.829	1	54.829	54.329	55.329	0								0	0	0	0.037427	1	21037	21037		92.653	41.238	1				14216	5821	8559	8606	13661	13661					0.0825400488570267
HQLDEEALA	9	Unmodified	_HQLDEEALA_					0	0	0			REV__TTBK1|p.P669Hfs*4|1|0.1|ENSG00000146216|chr6:43282742-43282742|C/-|frameshift_variant	REV__TTBK1|p.P669Hfs*4|1|0.1|ENSG00000146216|chr6:43282742-43282742|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	513.2487182617188	2	513.248546	1024.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.022	1	31.744	31.244	32.244	-0.27841								0	0	0	0.62451	1	11721	11721		22.736	4.6013	1		+		14217	12480	8560	8607	13662	13662					-0.028723146957418066
HQPHQPLPPT	10	Unmodified	_HQPHQPLPPT_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S1	1	576.301513671875	2	576.301447	1150.58834	0.48407	0.00027897	0.23231	0.00013388	0.71638	0.00041285	576.3013725357284	21.115	0.74141	21.115	20.956	21.698	0					15	13	2	0	0	0	0.5682	1	7442	7442		41.956	41.956	1	2343400		+	14218	549	8561	8608	13663	13663					0.019070659403496393
HQSSNNEI	8	Unmodified	_HQSSNNEI_					0	0	0			REV__nc|ENSG00000115827|Q5H9S7-2|DCAF17	REV__nc|ENSG00000115827|Q5H9S7-2|DCAF17	MULTI-MSMS	HCT116MG_D190212_S4	4	464.70953369140625	2	464.709588	927.404623	-0.58457	-0.00027166	0.75969	0.00035304	0.17512	8.1382E-05	464.70990187596	16.593	0.49093	16.426	16.221	16.712	-0.16664					14	9	2	0	0	0	0.79062	1	5447	5447		12.532	0	1	1489300	+		14219	11558	8562	8609	13664	13664					-0.061983275611282806
HQSVFDEL	8	Unmodified	_HQSVFDEL_					0	0	0		NELFB|p.L128Tfs*7|1|0.42|ENSG00000188986|chr9:137256832-137256833|-/A|frameshift_variant;ENSG00000188986|ENST00000343053|NELFB;nc|ENSG00000188986|Q8WX92|NELFB	NELFB|p.L128Tfs*7|1|0.42|ENSG00000188986|chr9:137256832-137256833|-/A|frameshift_variant	NELFB|p.L128Tfs*7|1|0.42|ENSG00000188986|chr9:137256832-137256833|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	487.26361083984375	2	487.732532	973.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.337	1	39.959	39.459	40.459	-0.37828								0	0	0	0.85589	1	14795	14795		18.135	2.2878	1				14220	6010	8563	8610	13665	13665					-0.03727682378894315
HQVTEYVPQAL	11	Unmodified	_HQVTEYVPQAL_					0	0	0			REV__DUS2|p.R393H|1|0.07|ENSG00000167264|chr16:68078452-68078452|G/A|missense_variant	REV__DUS2|p.R393H|1|0.07|ENSG00000167264|chr16:68078452-68078452|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.149	1	10.181	9.6815	10.681	0.032559								0	0	0	0.96121	1	3068	3068		0.45452	0	1		+		14221	10421	8564	8611	13666	13666					0.02052167217925671
HRCYCTEEQYS	11	Unmodified	_HRCYCTEEQYS_					0	0	0			REV__ENST00000366574.6_1_1:237655207-237656371:+|nuORF	REV__ENST00000366574.6_1_1:237655207-237656371:+|nuORF	MSMS	HCT116MG_D190212_S4	4	473.5198059082031	3	473.520305	1417.53908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.961	1	47.592	47.092	48.092	-0.36907								0	0	0	0.9598	1	17747	17747		0.40827	0	1		+		14222	15105	8565	8612	13667	13667					-0.15298378193051576
HREREHEFQ	9	Unmodified	_HREREHEFQ_					0	0	0		ATP6V1G2|p.R48H|1|0.32|ENSG00000213760|chr6:31546149-31546149|C/T|missense_variant	ATP6V1G2|p.R48H|1|0.32|ENSG00000213760|chr6:31546149-31546149|C/T|missense_variant	ATP6V1G2|p.R48H|1|0.32|ENSG00000213760|chr6:31546149-31546149|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	423.2336730957031	3	423.202404	1266.58538	0.04276	1.8096E-05	2.2084	0.00093461	2.2512	0.0009527	423.5375829572562	19.959	0.15524	19.584	19.455	19.61	-0.37503					4	2	2	0	0	0	0.71898	1	6921	6921		2.2828	0.3764	1	2864200			14223	227	8566	8613	13668	13668					-0.037248091844503506
HRERKKRTRLR	11	Unmodified	_HRERKKRTRLR_					0	0	0			REV__LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	REV__LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	768.477783203125	2	768.476923	1534.93929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.301	1	58.032	57.532	58.532	-0.26932								0	0	0	0.96149	1	22175	22175		0.30703	0	1		+		14224	16979	8567	8614	13669	13669					0.1932212003935092
HRERKKRTRLR	11	Unmodified	_HRERKKRTRLR_					0	0	0			REV__LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	REV__LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	768.4782104492188	2	768.476923	1534.93929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.327	1	58.038	57.538	58.538	-0.28879								0	0	0	0.96149	1	21919	21919		0.30703	0	1		+		14225	16979	8567	8614	13670	13670					0.1932212003935092
HRFMAEMVDFF	11	Unmodified	_HRFMAEMVDFF_					0	0	0		ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	MSMS	HCT116MG_D190212_S4	4	715.368408203125	2	715.323208	1428.63186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.665	1	20.464	19.964	20.964	-0.20133								0	0	0	0.95113	1	7088	7088		5.7319	0.43497	1				14226	3475	8568	8615	13671	13671					-0.06530828669019684
HRGAVVVL	8	Unmodified	_HRGAVVVL_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-3|UNC45A;ENST00000471780.1_1_15:91493362-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S1	1	425.7666931152344	2	425.766512	849.518471	0.21209	9.0302E-05	0.098997	4.215E-05	0.31109	0.00013245	425.76646533626	33.011	0.34945	33.011	32.843	33.193	0					12	6	3	0	0	0	0.21487	1	12211	12211		70.716	30.267	1	26864000			14227	3675	8569	8616	13672	13672					0.08769232062422816
HRGAVVVL	8	Unmodified	_HRGAVVVL_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-3|UNC45A;ENST00000471780.1_1_15:91493362-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S2	2	425.7664794921875	2	425.766512	849.518471	0.41534	0.00017684	0.080952	3.4466E-05	0.49629	0.0002113	425.7664389662751	33.443	0.35944	33.25	33.071	33.43	-0.19297					13	6	3	0	0	0	0.15838	1	12415	12415		81.864	34.943	1	81679000			14228	3675	8569	8616	13673	13673					0.08769232062422816
HRGAVVVL	8	Unmodified	_HRGAVVVL_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-3|UNC45A;ENST00000471780.1_1_15:91493362-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MATCH	HCT116MG_D190212_S3	3		2	425.766512	849.518471	0.17582	7.4858E-05	0.48922	0.00020829	0.66504	0.00028315	425.76657094469346	33.464	0.2029	33.174	33.049	33.252	-0.29013	0.029215	0.00029665	NaN	81.864	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1858500			14229	3675	8569	8616							0.08769232062422816
HRGIELTL	8	Unmodified	_HRGIELTL_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1;nc|ENSG00000176974|P34896-3|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	469.77435302734375	2	469.774534	937.534515	0.23036	0.00010822	0.076652	3.6009E-05	0.30701	0.00014423	469.77438583396895	42.058	0.31204	41.99	41.808	42.12	-0.068199					10	5	3	0	0	0	0.064348	1	15923	15923		108	29.848	1	34000000			14230	5445	8570	8617	13674	13674					0.06324893508644891
HRGRRRRRRR	10	Unmodified	_HRGRRRRRRR_					0	0	0			REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF	REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	487.2821350097656	3	487.973886	1460.89983	0.30613	0.00014939	1.4517	0.00070841	1.7579	0.0008578	487.97474005186587	56.145	0.61652	56.145	55.709	56.326	0					21	11	4	0	0	0	0.31204	1	21538	21538		0.12286	0	1	235240000	+		14231	14740	8571	8618	13675	13675					0.1878145759912968
HRKGSRLGGKR	11	Unmodified	_HRKGSRLGGKR_					0	0	0		ERICH3|p.P407Tfs*7|2|0.18|ENSG00000178965|chr1:74606871-74606872|-/T|frameshift_variant;ERICH3|p.S513Ifs*2|1|0.49|ENSG00000178965|chr1:74599884-74599885|-/T|frameshift_variant;nc|ENSG00000178965|Q5RHP9-3|ERICH3;ERICH3|p.E543Rfs*3|1|0.13|ENSG00000178965|chr1:74599794-74599795|-/T|frameshift_variant;ERICH3|p.E543Rfs*16|1|0.36|ENSG00000178965|chr1:74599795-74599795|T/-|frameshift_variant;ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant;ERICH3|p.R829Kfs*25|1|0.29|ENSG00000178965|chr1:74573224-74573225|-/T|frameshift_variant;ENSG00000178965|ENST00000326665|ERICH3	ERICH3|p.P407Tfs*7|2|0.18|ENSG00000178965|chr1:74606871-74606872|-/T|frameshift_variant	ERICH3|p.P407Tfs*7|2|0.18|ENSG00000178965|chr1:74606871-74606872|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	418.2563781738281	3	417.921683	1250.74322	0.29594	0.00012368	0.72985	0.00030502	1.0258	0.0004287	417.9218332883147	55.919	0.26344	55.607	55.454	55.718	-0.312					7	4	2	0	0	0	0.74191	1	20987	20987		0.45452	0.1855	1	2945500			14232	5524	8572	8619	13676	13676					0.1278773486544651
HRKHFLFR	8	Unmodified	_HRKHFLFR_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	HCT116MG_D190212_S2	2	380.8907775878906	3	380.889432	1139.64647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7501	1	4.6314	4.1314	5.1314	-0.11871								0	0	0	0.8837	1	1500	1500		0.40072	0.16487	1				14233	4399	8573	8620	13677	13677					0.08222792376318466
HRKVREILIT	10	Unmodified	_HRKVREILIT_					0	0	0			REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	422.2672424316406	3	422.266456	1263.77754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.316	1	52.981	52.481	53.481	-0.33473								0	0	0	0.96804	1	19902	19902		0.69767	0	1		+		14234	17785	8574	8621	13678	13678					0.15620138233703074
HRLERIPHLR	10	Unmodified	_HRLERIPHLR_					0	0	0		ENST00000304056.8_1_7:32919436-32931464:-|nuORF	ENST00000304056.8_1_7:32919436-32931464:-|nuORF	ENST00000304056.8_1_7:32919436-32931464:-|nuORF	MSMS	HCT116MG_D190212_S1	1	442.9325256347656	3	442.9337	1325.77927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.514	1	50.514	50.014	51.014	0								0	0	0	0.95776	1	19276	19276		1.4551	0	1				14235	7019	8575	8622	13679	13679					0.12941192042285365
HRLRQAQRR	9	Unmodified	_HRLRQAQRR_					0	0	0		nc|ENSG00000160683|P32302-2|CXCR5;ENSG00000160683|ENST00000292174|CXCR5	nc|ENSG00000160683|P32302-2|CXCR5	nc|ENSG00000160683|P32302-2|CXCR5	MULTI-MSMS	HCT116MG_D190212_S1	1	407.5782775878906	3	407.578028	1219.71225	0.051729	2.1084E-05	0.89906	0.00036644	0.95079	0.00038752	407.912781140556	54.14	0.20536	54.14	54.026	54.231	0					8	3	3	0	0	0	0.73977	1	20778	20778		2.4985	0.063701	1	22323000			14236	4457	8576	8623	13680	13680					0.11118581551204443
HRNGDPEES	9	Unmodified	_HRNGDPEES_					0	0	0		SMCR8|p.L199Afs*33|1|0.26|ENSG00000176994|chr17:18316375-18316376|-/A|frameshift_variant	SMCR8|p.L199Afs*33|1|0.26|ENSG00000176994|chr17:18316375-18316376|-/A|frameshift_variant	SMCR8|p.L199Afs*33|1|0.26|ENSG00000176994|chr17:18316375-18316376|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1040.4398193359375	1	1040.43918	1039.4319	0.62235	0.00064752	0.019161	1.9936E-05	0.64151	0.00066745	1040.4390474960699	52.423	0.83622	52.117	51.934	52.77	-0.30639					26	15	2	0	0	0	0.71345	1	19816	19816		4.3292	0	1	6719300			14237	18174	8577	8624	13681	13681					-0.08623844020758042
HRNGDPEES	9	Unmodified	_HRNGDPEES_					0	0	0		SMCR8|p.L199Afs*33|1|0.26|ENSG00000176994|chr17:18316375-18316376|-/A|frameshift_variant	SMCR8|p.L199Afs*33|1|0.26|ENSG00000176994|chr17:18316375-18316376|-/A|frameshift_variant	SMCR8|p.L199Afs*33|1|0.26|ENSG00000176994|chr17:18316375-18316376|-/A|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	1040.43918	1039.4319	0.62229	0.00064746	0.13803	0.00014361	0.76032	0.00079107	1040.4392564892005	52.445	0.78074	52.105	51.884	52.665	-0.34024	-0.005745	3.1614E-05	NaN	4.3292	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5624300			14238	18174	8577	8624							-0.08623844020758042
HRNYKEKDSKY	11	Unmodified	_HRNYKEKDSKY_					0	0	0			REV__ENSG00000072401|ENST00000373910|UBE2D1	REV__ENSG00000072401|ENST00000373910|UBE2D1	MULTI-MSMS	HCT116MG_D190212_S2	2	734.3723754882812	2	734.370589	1466.72663	0.99065	0.0007275	1.4217	0.0010441	2.4123	0.0017716	734.3713813138763	54.282	0.30708	54.092	53.996	54.303	-0.1894					10	5	4	0	0	0	0.6626	1	20911	20911		28.495	3.5035	1	59497000	+		14239	10776	8578	8625	13682	13682					0.011931443981893608
HRNYKEKDSKY	11	Unmodified	_HRNYKEKDSKY_					0	0	0			REV__ENSG00000072401|ENST00000373910|UBE2D1	REV__ENSG00000072401|ENST00000373910|UBE2D1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	734.370589	1466.72663	0.99065	0.0007275	1.4217	0.0010441	2.4123	0.0017716	734.3713813138763	54.282	0.30708	54.092	53.996	54.303	-0.1894	0.020434	0.00052212	NaN	28.495	10	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59497000	+		14240	10776	8578	8625							0.011931443981893608
HRPRQSLRRRP	11	Unmodified	_HRPRQSLRRRP_					0	0	0		ENSG00000186207|ENST00000334269|LCE5A	ENSG00000186207|ENST00000334269|LCE5A	ENSG00000186207|ENST00000334269|LCE5A	MULTI-MSMS	HCT116MG_D190212_S1	1	487.7907409667969	3	486.95902	1457.85523	0.31382	0.00015282	0.040545	1.9744E-05	0.35436	0.00017256	486.95907681486693	52.613	0.72082	52.613	52.073	52.794	0					43	13	4	0	0	0	0.74191	1	19931	19931		0.45452	0.046251	1	105900000			14241	5874	8579	8626	13683	13683					0.14461588942413073
HRPRQSLRRRP	11	Unmodified	_HRPRQSLRRRP_					0	0	0		ENSG00000186207|ENST00000334269|LCE5A	ENSG00000186207|ENST00000334269|LCE5A	ENSG00000186207|ENST00000334269|LCE5A	MULTI-MSMS	HCT116MG_D190212_S4	4	486.9590148925781	3	486.95902	1457.85523	-0.008818	-4.294E-06	0.27556	0.00013419	0.26674	0.00012989	487.2933838045664	54.748	2.0839	54.425	53.046	55.13	-0.32349					86	39	4	0	0	0	0.74191	1	20362	20362		0.40827	0.40827	1	27323000			14242	5874	8579	8626	13684	13684					0.14461588942413073
HRRGQLKHQRR	11	Unmodified	_HRRGQLKHQRR_					0	0	0			REV__ENST00000361673.3_1_18:56246097-56246205:-|nuORF	REV__ENST00000361673.3_1_18:56246097-56246205:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	736.9345092773438	2	736.432516	1470.85048	0.89235	0.00065715	0.17459	0.00012857	1.0669	0.00078573	736.4323014341959	53.17	2.2041	53.17	52.383	54.587	0					82	42	3	0	0	0	0.74191	2	20180	20180;20661		1.0715	1.0715	1	54825000	+		14243	15097	8580	8627	13685;13686	13685					0.13388704799695006
HRRKKSFSRRQ	11	Unmodified	_HRRKKSFSRRQ_					0	0	0			REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	495.9591369628906	3	495.958908	1484.85489	0.46146	0.00022886	-0.11171	-5.5406E-05	0.34974	0.00017346	495.9587757751809	53.087	0.97686	53.087	52.434	53.411	0					37	18	3	0	0	0	0.74191	1	20402	20402		0.08335	0.08335	1	53759000	+		14244	17593	8581	8628	13687	13687					0.13186169222581157
HRRKKSFSRRQ	11	Unmodified	_HRRKKSFSRRQ_					0	0	0			REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	495.95916748046875	3	495.958908	1484.85489	0.46458	0.00023041	0.096705	4.7962E-05	0.56128	0.00027837	495.9588768101051	54.222	1.8384	54.222	53.359	55.197	0					133	35	6	0	0	0	0.74191	2	20867	20867;21112		0.45452	0.45452	1	510920000	+		14245	17593	8581	8628	13688;13689	13688					0.13186169222581157
HRRKKSFSRRQ	11	Unmodified	_HRRKKSFSRRQ_					0	0	0			REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	743.4347534179688	2	743.434724	1484.85489	0.98831	0.00073475	-0.074739	-5.5564E-05	0.91358	0.00067918	743.4344799301937	54.946	1.1749	54.758	54.203	55.377	-0.18797					62	22	4	0	0	0	0.74191	1	21325	21325		0.30703	0.03801	1	105510000	+		14246	17593	8581	8628	13690	13690					0.13186169222581157
HRRKKSFSRRQ	11	Unmodified	_HRRKKSFSRRQ_					0	0	0			REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	743.4358520507812	2	743.434724	1484.85489	0.94926	0.00070571	0.20981	0.00015598	1.1591	0.00086169	743.4348311152303	55.111	0.67767	54.794	54.406	55.084	-0.31774					30	12	3	0	0	0	0.74191	1	20575	20575		0.30703	0.30703	1	7478700	+		14247	17593	8581	8628	13691	13691					0.13186169222581157
HRRKKSFSRRQ	11	Unmodified	_HRRKKSFSRRQ_					0	0	0			REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	495.95892333984375	3	495.958908	1484.85489	0.49782	0.0002469	0.18861	9.3541E-05	0.68643	0.00034044	495.9587291305748	55.167	0.83392	54.849	54.302	55.136	-0.31774					47	15	4	0	0	0	0.74191	1	20593	20593		0.08335	0.08335	1	14015000	+		14248	17593	8581	8628	13692	13692					0.13186169222581157
HRRKKSFSRRQ	11	Unmodified	_HRRKKSFSRRQ_					0	0	0			REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	REV__SRRM4|p.R144Q|1|0.46|ENSG00000139767|chr12:119117002-119117002|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	495.958908	1484.85489	0.45866	0.00022748	0.16011	7.9406E-05	0.61877	0.00030688	495.95895529787043	54.333	0.67735	54.01	53.567	54.244	-0.32349	-0.10597	8.1121E-05	NaN	0.36667	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2598400	+		14249	17593	8581	8628							0.13186169222581157
HRRLKVAPL	9	Unmodified	_HRRLKVAPL_					0	0	0			REV__ENSG00000170876|ENST00000306077|TMEM43	REV__ENSG00000170876|ENST00000306077|TMEM43	MSMS	HCT116MG_D190212_S4	4	545.3534545898438	2	545.353817	1088.69308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.822	1	56.522	56.022	57.022	-0.3004								0	0	0	0.77008	1	21311	21311		0.6015	0	1		+		14250	13320	8582	8629	13693	13693					0.15228232207596193
HRRRRRRVCRL	11	Unmodified	_HRRRRRRVCRL_					0	0	0			REV__ENSG00000184560|ENST00000333870|SPEM2	REV__ENSG00000184560|ENST00000333870|SPEM2	MULTI-MSMS	HCT116MG_D190212_S2	2	522.3162231445312	3	521.986915	1562.93892	0.45092	0.00023537	1.0504	0.00054829	1.5013	0.00078366	521.9872817457909	56.127	0.30824	55.944	55.796	56.104	-0.18261					7	5	2	0	0	0	0.74191	1	21657	21657		0	0	1	8404900	+		14251	13804	8583	8630	13694	13694					0.1799642183850665
HRTPDHLTP	9	Unmodified	_HRTPDHLTP_					0	0	0		ENST00000250894.8_2_16:1818305-1818896:+|nuORF	ENST00000250894.8_2_16:1818305-1818896:+|nuORF	ENST00000250894.8_2_16:1818305-1818896:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2769775390625	2	537.277972	1072.54139	0.40211	0.00021604	-1.9816	-0.0010646	-1.5794	-0.0008486	537.27712132154	21.519	0.77873	21.134	20.544	21.323	-0.38472					21	14	2	0	0	0	0.12994	1	7515	7515		52.268	2.7141	1	10345000			14252	6798	8584	8631	13695	13695					0.008022063892212827
HRVLWCLRP	9	Unmodified	_HRVLWCLRP_					0	0	0			REV__ENST00000505852.1_1_4:667184-668117:-|nuORF	REV__ENST00000505852.1_1_4:667184-668117:-|nuORF	MSMS	HCT116MG_D190212_S2	2	393.5560607910156	3	393.890444	1178.6495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.399	1	40.329	39.829	40.829	-0.070183								0	0	0	0.76793	1	15234	15234		8.1555	0.21013	1		+		14253	16142	8585	8632	13696	13696					0.06732299438795053
HRVRWQWQHVF	11	Unmodified	_HRVRWQWQHVF_					0	0	0		ENST00000318876.9_1_14:73437074-73437530:-|nuORF	ENST00000318876.9_1_14:73437074-73437530:-|nuORF	ENST00000318876.9_1_14:73437074-73437530:-|nuORF	MSMS	HCT116MG_D190212_S4	4	789.9133911132812	2	789.913093	1577.81163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.907	1	41.53	41.03	42.03	-0.37637								0	0	0	0.96208	1	15382	15382		0	0	1				14254	7092	8586	8633	13697	13697					0.045839794452831484
HRWHWRARRRE	11	Unmodified	_HRWHWRARRRE_					0	0	0			REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF	REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MSMS	HCT116MG_D190212_S4	4	823.4430541992188	2	823.443415	1644.87228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.201	1	24.921	24.421	25.421	-0.27958								0	0	0	0.96208	1	8919	8919		0	0	1		+		14255	16778	8587	8634	13698	13698					0.07563509548231195
HRWIRQTLTVQ	11	Unmodified	_HRWIRQTLTVQ_					0	0	0			REV__ENST00000403162.7_1_17:61829735-61829786:-|nuORF	REV__ENST00000403162.7_1_17:61829735-61829786:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	479.7821350097656	3	479.940632	1436.80007	0.19671	9.4409E-05	-0.63422	-0.00030439	-0.43751	-0.00020998	479.94044265997	28.437	0.20689	28.107	27.977	28.184	-0.32987					6	3	2	0	0	0	0.36536	1	10396	10396		3.5927	1.3399	1	26480000	+		14256	15399	8588	8635	13699	13699					0.09913737631313779
HRWIRQTLTVQ	11	Unmodified	_HRWIRQTLTVQ_					0	0	0			REV__ENST00000403162.7_1_17:61829735-61829786:-|nuORF	REV__ENST00000403162.7_1_17:61829735-61829786:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	479.940632	1436.80007	0.29304	0.00014064	-0.87667	-0.00042075	-0.58363	-0.00028011	479.9401674914699	28.087	0.312	28.087	27.956	28.268	0	-0.0096705	-1.0776E-05	NaN	5.8681	17	5	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95855000	+		14257	15399	8588	8635							0.09913737631313779
HRWPLRLALRS	11	Unmodified	_HRWPLRLALRS_					0	0	0			REV__ENST00000413817.7_2_22:50754827-50757307:-|nuORF	REV__ENST00000413817.7_2_22:50754827-50757307:-|nuORF	MSMS	HCT116MG_D190212_S1	1	703.39697265625	2	702.920387	1403.82622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.732	1	50.732	50.232	51.232	0								0	0	0	0.92983	1	19365	19365		16.149	3.9084	1		+		14258	15459	8589	8636	13700	13700					0.14046051593459197
HRWRFTCYYYY	11	Unmodified	_HRWRFTCYYYY_					0	0	0		ENST00000444199.1_1_19:55208384-55209490:+|nuORF;nc|ENSG00000244482|Q6PI73|LILRA6;ENSG00000244482|ENST00000396365|LILRA6;nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3	ENST00000444199.1_1_19:55208384-55209490:+|nuORF	ENST00000444199.1_1_19:55208384-55209490:+|nuORF	MSMS	HCT116MG_D190212_S2	2	829.2669067382812	2	829.372078	1656.7296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.344	1	43.27	42.77	43.77	-0.073376								0	0	0	0.96141	1	16432	16432		0.35063	0	1				14259	7943	8590	8637	13701	13701					-0.07249303748653801
HSCEGCDASCC	11	Unmodified	_HSCEGCDASCC_					0	0	0		ENSG00000002746|ENST00000395891|HECW1;nc|ENSG00000002746|Q76N89-2|HECW1;HECW1|p.F1315*|1|0.35|ENSG00000002746|chr7:43509045-43509046|TT/-|frameshift_variant	ENSG00000002746|ENST00000395891|HECW1	ENSG00000002746|ENST00000395891|HECW1	MSMS	HCT116MG_D190212_S4	4	557.6844482421875	2	557.656469	1113.29838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.422	1	50.063	49.563	50.563	-0.35878								0	0	0	0.96208	1	18733	18733		0	0	1				14260	790	8591	8638	13702	13702					-0.25373233776304005
HSDGFHCN	8	Unmodified	_HSDGFHCN_					0	0	0		ENST00000392693.7_1_11:125851220-125853852:-|nuORF	ENST00000392693.7_1_11:125851220-125853852:-|nuORF	ENST00000392693.7_1_11:125851220-125853852:-|nuORF	MSMS	HCT116MG_D190212_S3	3	458.6719055175781	2	458.671951	915.329349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9311	1	5.9454	5.4454	6.4454	0.01438								0	0	0	0.8837	1	1796	1796		0	0	1				14261	7616	8592	8639	13703	13703					-0.1317020829322928
HSDIGYRSL	9	Unmodified	_HSDIGYRSL_					0	0	0		ENSG00000123576|ENST00000372588|ESX1	ENSG00000123576|ENST00000372588|ESX1	ENSG00000123576|ENST00000372588|ESX1	MSMS	HCT116MG_D190212_S4	4	524.2628173828125	2	524.26453	1046.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.097	1	45.725	45.225	46.225	-0.37206								0	0	0	0.32965	1	17026	17026		37.974	3.5723	1				14262	2810	8593	8640	13704	13704					-0.0068890222196387185
HSDKSRPGQY	10	Unmodified	_HSDKSRPGQY_					0	0	0		ENST00000564033.1_1_16:2086312-2087982:+|nuORF;nc|ENSG00000065054|Q15599-3|NHERF2;nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	587.783935546875	2	587.783619	1173.55268	0.64761	0.00038066	-0.13258	-7.7929E-05	0.51503	0.00030273	587.7835099252164	15.196	0.15666	15.196	15.066	15.223	0					8	2	4	0	0	0	0.023242	1	5034	5034		114.5	79.565	1	10641000			14263	1148	8594	8641	13705	13705					-0.02715016307274709
HSDKSRPGQY	10	Unmodified	_HSDKSRPGQY_					0	0	0		ENST00000564033.1_1_16:2086312-2087982:+|nuORF;nc|ENSG00000065054|Q15599-3|NHERF2;nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	392.19140625	3	392.191504	1173.55268	-0.054286	-2.129E-05	0.089113	3.495E-05	0.034828	1.3659E-05	392.1914132094265	15.194	0.20893	15.194	15.066	15.275	0					8	3	3	0	0	0	0.31047	1	5037	5037		42.835	29.963	1	7027400			14264	1148	8594	8641	13706	13706					-0.02715016307274709
HSDKSRPGQY	10	Unmodified	_HSDKSRPGQY_					0	0	0		ENST00000564033.1_1_16:2086312-2087982:+|nuORF;nc|ENSG00000065054|Q15599-3|NHERF2;nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	392.1914367675781	3	392.191504	1173.55268	-0.04582	-1.797E-05	-0.37788	-0.0001482	-0.4237	-0.00016617	392.19143256822485	11.337	0.38301	11.055	10.915	11.298	-0.28186					51	16	5	0	0	0	0.87945	1	3612	3612		6.1918	4.8622	1	2191400			14265	1148	8594	8641	13707	13707					-0.02715016307274709
HSDKSRPGQY	10	Unmodified	_HSDKSRPGQY_					0	0	0		ENST00000564033.1_1_16:2086312-2087982:+|nuORF;nc|ENSG00000065054|Q15599-3|NHERF2;nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	587.7841796875	2	587.783619	1173.55268	0.4289	0.0002521	0.17228	0.00010126	0.60117	0.00035336	587.7837454077223	11.366	0.35473	11.084	10.915	11.27	-0.28186					35	15	3	0	0	0	0.8224	1	3626	3626		10.151	3.4274	1	1075300			14266	1148	8594	8641	13708	13708					-0.02715016307274709
HSDKSRPGQY	10	Unmodified	_HSDKSRPGQY_					0	0	0		ENST00000564033.1_1_16:2086312-2087982:+|nuORF;nc|ENSG00000065054|Q15599-3|NHERF2;nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	587.7839965820312	2	587.783619	1173.55268	0.43075	0.00025319	-0.54563	-0.00032071	-0.11488	-6.7525E-05	587.7834488245896	15.16	0.41704	14.833	14.55	14.967	-0.32684					16	7	4	0	0	0	0.048437	1	5021	5021		88.364	57.095	1	6778400			14267	1148	8594	8641	13709	13709					-0.02715016307274709
HSDKSRPGQY	10	Unmodified	_HSDKSRPGQY_					0	0	0		ENST00000564033.1_1_16:2086312-2087982:+|nuORF;nc|ENSG00000065054|Q15599-3|NHERF2;nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	ENST00000564033.1_1_16:2086312-2087982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	392.1911926269531	3	392.191504	1173.55268	-0.04185	-1.6413E-05	0.092863	3.642E-05	0.051013	2.0007E-05	392.19144994608905	15.163	0.20854	14.837	14.706	14.915	-0.32684					6	3	2	0	0	0	0.57664	1	5028	5028		20.871	7.2563	1	3225700			14268	1148	8594	8641	13710	13710					-0.02715016307274709
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	HCT116MG_D190212_S1	1	548.71484375	2	548.714536	1095.41452	0.52946	0.00029052	-0.15547	-8.5307E-05	0.37399	0.00020521	548.7143462469214	34.154	0.31292	34.154	33.972	34.285	0					9	5	2	0	0	0	0.071351	1	12693	12693		64.236	47.294	1	7767000			14269	2665	8595	8642	13711	13711					-0.12937184346424146
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	HCT116MG_D190212_S2	2	548.7149658203125	2	548.714536	1095.41452	0.52612	0.00028869	0.067385	3.6975E-05	0.5935	0.00032566	548.7145174979432	34.273	0.46654	34.097	33.864	34.331	-0.17512					13	8	3	0	0	0	0.071351	1	12792	12792		64.236	47.294	1	49611000			14270	2665	8595	8642	13712	13712					-0.12937184346424146
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-SECPEP	HCT116MG_D190212_S3	3	548.2693481445312	2	548.714536	1095.41452	0.32292	0.00017719	0.70095	0.00038462	1.0239	0.00056181	548.7148400691024	34.556	0.72771	34.259	33.764	34.492	-0.29707					23	13	2	0	0	0	0.067055	1	12709	12709		64.236	47.294	1	19413000			14271	2665	8595	8642	13713	13713					-0.12937184346424146
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-MSMS	HCT116MG_D190212_S4	4	548.7144165039062	2	548.714536	1095.41452	0.4488	0.00024626	-0.30783	-0.00016891	0.14097	7.7352E-05	548.714214119612	34.634	0.25231	34.248	34.087	34.34	-0.38558					7	4	2	0	0	0	0.035914	1	12652	12652		81.613	47.511	1	5984300			14272	2665	8595	8642	13714	13714					-0.12937184346424146
HSDPMFSSY	9	Unmodified	_HSDPMFSSY_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S1	1	535.7160034179688	2	535.716024	1069.4175	-0.0069985	-3.7492E-06	0.52446	0.00028096	0.51746	0.00027721	535.7162827676549	38.752	0.36265	38.752	38.644	39.007	0					11	6	2	0	0	0	0.027492	2	14532	14532;14543		88.904	46.809	1	15962000			14273	3992	8596	8643	13715;13716	13715					-0.11443632493251243
HSDPMFSSY	9	Unmodified	_HSDPMFSSY_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S2	2	535.71630859375	2	535.716024	1069.4175	0.39789	0.00021316	0.048424	2.5941E-05	0.44632	0.0002391	535.7159371248985	38.816	0.57886	38.731	38.382	38.961	-0.084621					22	10	3	0	0	0	0.027492	1	14571	14571		88.904	40.558	1	79492000			14274	3992	8596	8643	13717	13717					-0.11443632493251243
HSDPMFSSY	9	Unmodified	_HSDPMFSSY_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S2	2	1070.426025390625	1	1070.42477	1069.4175	0.43963	0.00047059	0.30515	0.00032664	0.74478	0.00079723	1070.4249878891292	38.812	0.41722	38.728	38.492	38.909	-0.084618					12	7	2	0	0	0	1.3942E-05	1	14594	14594		214.14	149.9	1	29647000			14275	3992	8596	8643	13718	13718					-0.11443632493251243
HSDPMFSSY	9	Unmodified	_HSDPMFSSY_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S3	3	535.71630859375	2	535.716024	1069.4175	0.43182	0.00023133	-0.40568	-0.00021733	0.026135	1.4001E-05	535.7158017453665	39.059	0.41563	38.758	38.508	38.924	-0.30137					12	7	2	0	0	0	0.37539	1	14461	14461		24.021	8.1734	1	8124900			14276	3992	8596	8643	13719	13719					-0.11443632493251243
HSDPMFSSY	9	Oxidation (M)	_HSDPM(Oxidation (M))FSSY_		HSDPM(1)FSSY		HSDPM(89)FSSY	0	0	1		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S2	2	543.7137451171875	2	543.713482	1085.41241	0.48848	0.0002656	-0.057423	-3.1222E-05	0.43106	0.00023437	543.7134118580828	30.884	0.62062	30.617	30.456	31.077	-0.26704					19	11	2	0	0	0	0.027492	1	11525	11525		88.904	60.417	1	11070000			14277	3992	8596	8644	13720	13720		90			-0.12687936355882812
HSDPRQTFLY	10	Unmodified	_HSDPRQTFLY_					0	0	0		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MSMS	HCT116MG_D190212_S2	2	632.30859375	2	632.309469	1262.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.42	1	38.327	37.827	38.827	-0.09301								0	0	0	0.81221	1	14433	14433		27.223	11.975	1				14278	1420	8597	8645	13721	13721					-0.01641272613392175
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	HCT116MG_D190212_S1	1	494.7406921386719	2	494.740357	987.46616	0.68345	0.00033813	-0.30913	-0.00015294	0.37432	0.00018519	494.7402287517805	41.495	0.62438	41.495	41.185	41.81	0					25	11	3	0	0	0	0.031005	1	15605	15605		85.357	29.18	1	18566000			14279	3962	8598	8646	13722	13722					-0.028073958618506367
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	HCT116MG_D190212_S2	2	988.47314453125	1	988.473437	987.46616	0.96062	0.00094955	0.45503	0.00044978	1.4156	0.0013993	988.4736592331823	41.473	0.61731	41.405	41.191	41.808	-0.068195					18	11	2	0	0	0	6.2528E-05	1	15655	15655		205.82	144.46	1	49038000			14280	3962	8598	8646	13723	13723					-0.028073958618506367
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7403259277344	2	494.740357	987.46616	0.45269	0.00022396	0.25462	0.00012597	0.70731	0.00034993	494.74040979570003	41.534	0.82403	41.466	41.089	41.913	-0.068195					35	15	4	0	0	0	0.031005	1	15662	15662		85.357	39.657	1	109900000			14281	3962	8598	8646	13724	13724					-0.028073958618506367
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	HCT116MG_D190212_S3	3	495.2421875	2	494.740357	987.46616	0.10609	5.2487E-05	0.42065	0.00020811	0.52674	0.0002606	494.74049980055435	41.661	0.51004	41.359	41.271	41.781	-0.30257					23	14	2	0	0	0	0.043314	2	15497	15497;15506		77.984	30.236	1	12380000			14282	3962	8598	8646	13725;13726	13725					-0.028073958618506367
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MSMS	HCT116MG_D190212_S4	4	494.7401123046875	2	494.740357	987.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.925	1	41.549	41.049	42.049	-0.37637								0	0	0	0.76669	1	15390	15390		12.532	0	1				14283	3962	8598	8646	13727	13727					-0.028073958618506367
HSDQQVFEY	9	Unmodified	_HSDQQVFEY_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	HCT116MG_D190212_S1	1	576.751708984375	2	576.751453	1151.48835	0.85438	0.00049276	-0.33841	-0.00019518	0.51597	0.00029759	576.7512342574073	37.473	0.35417	37.473	37.301	37.655	0					10	6	2	0	0	0	0.0048275	1	14002	14002		139.14	95.28	1	56164000			14284	3702	8599	8647	13728	13728					-0.0813321618406917
HSDQQVFEY	9	Unmodified	_HSDQQVFEY_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	HCT116MG_D190212_S2	2	576.9273681640625	2	576.751453	1151.48835	0.20023	0.00011548	-0.41167	-0.00023743	-0.21145	-0.00012195	576.7511587426349	37.526	0.40838	37.423	37.232	37.641	-0.10318					12	7	2	0	0	0	0.0038833	2	14086	14064;14086		152.41	108.55	1	196570000			14285	3702	8599	8647	13729;13730	13730					-0.0813321618406917
HSDQQVFEY	9	Unmodified	_HSDQQVFEY_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	HCT116MG_D190212_S3	3	576.7518920898438	2	576.751453	1151.48835	0.54784	0.00031597	0.25131	0.00014494	0.79915	0.00046091	576.7517759579831	37.759	0.18719	37.457	37.347	37.534	-0.30137					31	22	2	0	0	0	0.0094709	1	13960	13960		114.65	78.522	1	36345000			14286	3702	8599	8647	13731	13731					-0.0813321618406917
HSDTIQWLY	9	Unmodified	_HSDTIQWLY_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1;ENST00000561922.1_1_16:67270489-67272168:-|nuORF;FHOD1|p.L225Afs*46|1|0.24|ENSG00000135723|chr16:67237739-67237740|-/T|frameshift_variant	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MSMS	HCT116MG_D190212_S3	3	581.7805786132812	2	581.780013	1161.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.172	1	52.869	52.369	53.369	-0.30305								0	0	0	0.16454	1	20118	20118		49.933	19.296	1				14287	3370	8600	8648	13732	13732					-0.028837489077204737
HSEAHTLLY	9	Unmodified	_HSEAHTLLY_					0	0	0		ENST00000460235.1_1_2:240024358-240029778:-|nuORF;ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;HDAC4|p.M902Wfs*55|2|0.45|ENSG00000068024|chr2:239081127-239081127|G/-|frameshift_variant;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000460235.1_1_2:240024358-240029778:-|nuORF	ENST00000460235.1_1_2:240024358-240029778:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	535.76708984375	2	535.766906	1069.51926	0.45386	0.00024316	0.2243	0.00012017	0.67816	0.00036333	535.7668099299726	33.53	0.51982	33.53	33.4	33.919	0					14	9	2	0	0	0	0.071914	1	12435	12435		81.613	53.126	1	14310000			14288	1194	8601	8649	13733	13733					-0.012720180791802704
HSEAHTLLY	9	Unmodified	_HSEAHTLLY_					0	0	0		ENST00000460235.1_1_2:240024358-240029778:-|nuORF;ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;HDAC4|p.M902Wfs*55|2|0.45|ENSG00000068024|chr2:239081127-239081127|G/-|frameshift_variant;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000460235.1_1_2:240024358-240029778:-|nuORF	ENST00000460235.1_1_2:240024358-240029778:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	535.766845703125	2	535.766906	1069.51926	0.48272	0.00025863	-0.0019114	-1.024E-06	0.48081	0.0002576	535.7667432397793	33.91	0.31212	33.735	33.552	33.864	-0.17512					10	5	2	0	0	0	0.071914	1	12599	12599		81.613	20.523	1	86719000			14289	1194	8601	8649	13734	13734					-0.012720180791802704
HSEAHTLLY	9	Unmodified	_HSEAHTLLY_					0	0	0		ENST00000460235.1_1_2:240024358-240029778:-|nuORF;ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;HDAC4|p.M902Wfs*55|2|0.45|ENSG00000068024|chr2:239081127-239081127|G/-|frameshift_variant;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000460235.1_1_2:240024358-240029778:-|nuORF	ENST00000460235.1_1_2:240024358-240029778:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	535.7667236328125	2	535.766906	1069.51926	0.50059	0.0002682	0.0080294	4.3019E-06	0.50862	0.0002725	535.7667125431913	34.035	0.4686	33.741	33.507	33.975	-0.29419					20	8	3	0	0	0	0.064006	1	12497	12497		85.272	48.806	1	20739000			14290	1194	8601	8649	13735	13735					-0.012720180791802704
HSECCQGNEP	10	Unmodified	_HSECCQGNEP_					0	0	0			REV__ENST00000418370.6_1_3:123339058-123339328:-|nuORF	REV__ENST00000418370.6_1_3:123339058-123339328:-|nuORF	MSMS	HCT116MG_D190212_S3	3	552.1965942382812	2	552.197673	1102.38079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.9788	1	3.024	2.524	3.524	0.045237								0	0	0	0.9696	1	902	902		0.35063	0	1		+		14291	15497	8602	8650	13736	13736					-0.16630252381492028
HSEDETCGP	9	Unmodified	_HSEDETCGP_					0	0	0			REV__ENSG00000148331|ENST00000277458|ASB6	REV__ENSG00000148331|ENST00000277458|ASB6	MULTI-MSMS	HCT116MG_D190212_S4	4	487.6789245605469	2	487.679639	973.344725	-0.41648	-0.00020311	-0.8948	-0.00043637	-1.3113	-0.00063948	487.6794030820842	17.473	0.41534	17.303	17.225	17.64	-0.17047					10	7	2	0	0	0	0.51829	1	5829	5829		15.847	4.2069	1	1394900	+		14292	12538	8603	8651	13737	13737					-0.14301386286672368
HSEFWHRYFYK	11	Unmodified	_HSEFWHRYFYK_					0	0	0		nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	MSMS	HCT116MG_D190212_S3	3	800.3795776367188	2	800.378217	1598.74188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.067	1	20.115	19.615	20.615	0.048107								0	0	0	0.9598	1	6919	6919		1.1933	0.88631	1				14293	4431	8604	8652	13738	13738					-0.03353944013974797
HSERHVLLY	9	Unmodified	_HSERHVLLY_					0	0	0		nc|ENSG00000061273|Q8WUI4-10|HDAC7;HDAC7|p.M769Wfs*12|1|0.42|ENSG00000061273|chr12:47787744-47787744|G/-|frameshift_variant;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48184825-48185932:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7	nc|ENSG00000061273|Q8WUI4-10|HDAC7	nc|ENSG00000061273|Q8WUI4-10|HDAC7	MULTI-MSMS	HCT116MG_D190212_S2	2	577.3093872070312	2	577.309272	1152.60399	0.45528	0.00026284	0.21361	0.00012332	0.66889	0.00038616	577.3093023385337	31.112	0.20574	30.845	30.768	30.974	-0.26704					7	3	3	0	0	0	0.040372	1	11496	11496		96.367	56.417	1	13191000			14294	1115	8605	8653	13739	13739					0.033793524574321054
HSERHVLLY	9	Unmodified	_HSERHVLLY_					0	0	0		nc|ENSG00000061273|Q8WUI4-10|HDAC7;HDAC7|p.M769Wfs*12|1|0.42|ENSG00000061273|chr12:47787744-47787744|G/-|frameshift_variant;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48184825-48185932:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7	nc|ENSG00000061273|Q8WUI4-10|HDAC7	nc|ENSG00000061273|Q8WUI4-10|HDAC7	MULTI-MSMS	HCT116MG_D190212_S2	2	385.54290771484375	3	385.208607	1152.60399	0.019643	7.5668E-06	-0.27988	-0.00010781	-0.26024	-0.00010025	385.54285445324615	31.134	0.25804	30.867	30.716	30.974	-0.26704					7	4	2	0	0	0	0.43552	1	11502	11502		20.581	11.037	1	12785000			14295	1115	8605	8653	13740	13740					0.033793524574321054
HSESLRYT	8	Unmodified	_HSESLRYT_					0	0	0			REV__FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant	REV__FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	497.45660400390625	2	496.743431	991.472308	0.29375	0.00014592	0.052175	2.5918E-05	0.34593	0.00017184	496.7433646629376	22.365	0.6771	22.365	22.042	22.719	0.00074577					20	12	2	0	0	0	0.30262	1	7776	7776		13.508	5.5977	1	4985300	+		14296	16811	8606	8654	13741	13741					-0.023768776303313643
HSEYHTLLY	9	Unmodified	_HSEYHTLLY_					0	0	0		HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant;HDAC5|p.I932Hfs*24|1|0.42|ENSG00000108840|chr17:44080432-44080433|-/G|frameshift_variant;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	581.7800903320312	2	581.780013	1161.54547	-0.34573	-0.00020114	0.31345	0.00018236	-0.032283	-1.8782E-05	581.7800952322389	38.201	0.26018	38.201	38.019	38.279	0					7	4	2	0	0	0	0.010304	1	14302	14302		112.59	72.145	1	10828000			14297	2186	8607	8655	13742	13742					-0.028837489076977363
HSEYHTLLY	9	Unmodified	_HSEYHTLLY_					0	0	0		HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant;HDAC5|p.I932Hfs*24|1|0.42|ENSG00000108840|chr17:44080432-44080433|-/G|frameshift_variant;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	581.780517578125	2	581.780013	1161.54547	0.33482	0.00019479	0.40437	0.00023526	0.73919	0.00043005	581.7801011407813	38.233	0.25865	38.14	38.011	38.27	-0.09301					9	4	3	0	0	0	0.00019648	1	14364	14364		196.94	138.26	1	84696000			14298	2186	8607	8655	13743	13743					-0.028837489076977363
HSEYHTLLY	9	Unmodified	_HSEYHTLLY_					0	0	0		HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant;HDAC5|p.I932Hfs*24|1|0.42|ENSG00000108840|chr17:44080432-44080433|-/G|frameshift_variant;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	581.7794189453125	2	581.780013	1161.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.5	1	38.198	37.698	38.698	-0.30137								0	0	0	0.0037621	1	14264	14264		120.45	72.702	1				14299	2186	8607	8655	13744	13744					-0.028837489076977363
HSEYHTLLY	9	Unmodified	_HSEYHTLLY_					0	0	0		HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant;HDAC5|p.I932Hfs*24|1|0.42|ENSG00000108840|chr17:44080432-44080433|-/G|frameshift_variant;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	HDAC5|p.I932Lfs*14|3|0.32|ENSG00000108840|chr17:44080433-44080433|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	581.7808837890625	2	581.780013	1161.54547	0.076947	4.4766E-05	0.84646	0.00049245	0.9234	0.00053722	581.7807138135267	38.653	0.24541	38.271	38.142	38.388	-0.38163					9	4	3	0	0	0	0.071351	1	14191	14191		64.236	34.012	1	4196700			14300	2186	8607	8655	13745	13745					-0.028837489076977363
HSGKALGPA	9	Unmodified	_HSGKALGPA_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-MSMS	HCT116MG_D190212_S2	2	419.2323303222656	2	419.232502	836.450451	0.031007	1.2999E-05	-0.0030346	-1.2722E-06	0.027973	1.1727E-05	419.23237382900055	23.708	0.41649	23.325	23.091	23.508	-0.38324					13	7	2	0	0	0	0.24895	1	8452	8452		36.127	0	1	20457000	+		14301	13021	8608	8656	13746	13746					0.025683624117391446
HSGKALGPA	9	Unmodified	_HSGKALGPA_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	419.232502	836.450451	0.031007	1.2999E-05	-0.0030346	-1.2722E-06	0.027973	1.1727E-05	419.23237382900055	23.708	0.41649	23.325	23.091	23.508	-0.38324	0.17093	-0.00010098	NaN	36.127	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20457000	+		14302	13021	8608	8656							0.025683624117391446
HSGKALGPA	9	Unmodified	_HSGKALGPA_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	419.232502	836.450451	0.0074755	3.134E-06	0.13733	5.7572E-05	0.1448	6.0706E-05	419.2324579383063	23.337	0.62712	23.09	22.853	23.48	-0.24775	-0.064265	1.6707E-05	NaN	36.127	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26199000	+		14303	13021	8608	8656							0.025683624117391446
HSGPEPGR	8	Unmodified	_HSGPEPGR_					0	0	0			REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	418.70428466796875	2	418.704109	835.393664	0.036835	1.5423E-05	0.10839	4.5383E-05	0.14522	6.0806E-05	418.7040986844354	16.988	0.41625	16.639	16.457	16.873	-0.34933					10	7	2	0	0	0	0.60054	1	5785	5785		32.305	3.8186	1	5756400	+		14304	11149	8609	8657	13747	13747					-0.03061685144768944
HSGPEPGR	8	Unmodified	_HSGPEPGR_					0	0	0			REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	418.70404052734375	2	418.704109	835.393664	0.013649	5.715E-06	0.019785	8.2842E-06	0.033435	1.3999E-05	418.7040839871541	17.614	0.67914	17.258	16.97	17.65	-0.35647					21	12	3	0	0	0	0.37603	1	6009	6009		52.268	3.9225	1	15304000	+		14305	11149	8609	8657	13748	13748					-0.03061685144768944
HSGPEPGR	8	Unmodified	_HSGPEPGR_					0	0	0			REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	418.7038879394531	2	418.704109	835.393664	-0.02248	-9.4125E-06	0.20345	8.5187E-05	0.18097	7.5774E-05	418.70411731735294	16.504	0.52007	16.589	16.341	16.861	0.085423					15	9	2	0	0	0	0.60054	1	5467	5467		32.305	5.4218	1	6166800	+		14306	11149	8609	8657	13749	13749					-0.03061685144768944
HSGPEPGR	8	Unmodified	_HSGPEPGR_					0	0	0			REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	418.7040100097656	2	418.704109	835.393664	-0.14443	-6.0474E-05	0.18655	7.8109E-05	0.042118	1.7635E-05	418.7041185669581	17.166	0.93665	17.251	16.912	17.849	0.084467					34	17	3	0	0	0	0.37603	1	5707	5707		52.268	3.9225	1	15296000	+		14307	11149	8609	8657	13750	13750					-0.03061685144768944
HSGPEPGR	8	Unmodified	_HSGPEPGR_					0	0	0			REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	418.7042236328125	2	418.704109	835.393664	-0.39659	-0.00016605	0.54895	0.00022985	0.15236	6.3793E-05	418.7042652556776	16.631	0.55468	16.464	16.261	16.815	-0.16664					17	10	2	0	0	0	0.60054	1	5457	5457		32.305	9.1571	1	2336500	+		14308	11149	8609	8657	13751	13751					-0.03061685144768944
HSGPEPGR	8	Unmodified	_HSGPEPGR_					0	0	0			REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	418.7037353515625	2	418.704109	835.393664	-0.21676	-9.0757E-05	0.1053	4.4088E-05	-0.11146	-4.6668E-05	418.70412793861965	17.276	0.72474	17.106	16.812	17.536	-0.17047					30	13	3	0	0	0	0.37603	1	5696	5696		52.268	3.9225	1	14415000	+		14309	11149	8609	8657	13752	13752					-0.03061685144768944
HSGPEPGR	8	Unmodified	_HSGPEPGR_					0	0	0			REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	419.1961364746094	2	418.704109	835.393664	-0.21676	-9.0757E-05	0.1053	4.4088E-05	-0.11146	-4.6668E-05	418.70412793861965	17.276	0.72474	17.106	16.812	17.536	-0.17047					30	13	3	0	0	0	0.16514	1	5739	5739		61.357	13.012	1	14415000	+		14310	11149	8609	8657	13753	13753					-0.03061685144768944
HSGPEPGR	8	Unmodified	_HSGPEPGR_					0	0	0			REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	REV__SRPX2|p.E438Rfs*12|1|0.24|ENSG00000102359|chrX:100670896-100670896|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	418.704109	835.393664	-0.39659	-0.00016605	0.54895	0.00022985	0.15236	6.3793E-05	418.7042652556776	16.631	0.55468	16.464	16.261	16.815	-0.16664	-0.099645	0.00022634	NaN	32.305	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2336500	+		14311	11149	8609	8657							-0.03061685144768944
HSHFHDTL	8	Unmodified	_HSHFHDTL_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	HCT116MG_D190212_S2	2	497.2305908203125	2	497.230491	992.446428	0.30907	0.00015368	0.20471	0.00010179	0.51378	0.00025546	497.2305138168283	23.137	0.26045	22.752	22.622	22.882	-0.3852					9	4	3	0	0	0	0.04808	1	8255	8255		125.62	32.802	1	18960000			14312	3715	8610	8658	13754	13754					-0.05009727081960591
HSLIDRWRGWG	11	Unmodified	_HSLIDRWRGWG_					0	0	0			REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	691.8553466796875	2	691.857452	1381.70035	0.62173	0.00043015	-1.2377	-0.0008563	-0.61595	-0.00042615	691.8563167766472	50.756	0.2063	50.585	50.456	50.662	-0.1719					6	3	2	0	0	0	0.60456	1	19470	19470		34.932	1.4872	1	26695000	+		14313	10174	8611	8659	13755	13755					0.02476920017352313
HSLIDRWRGWG	11	Unmodified	_HSLIDRWRGWG_					0	0	0			REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	691.857452	1381.70035	0.5337	0.00036925	-0.71155	-0.00049229	-0.17785	-0.00012305	691.8565235208142	50.6	0.20583	50.6	50.42	50.626	0	0.0075939	0.00020564	NaN	34.932	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8272100	+		14314	10174	8611	8659							0.02476920017352313
HSLIDRWRGWG	11	Unmodified	_HSLIDRWRGWG_					0	0	0			REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	691.857452	1381.70035	0.62173	0.00043015	-1.2377	-0.0008563	-0.61595	-0.00042615	691.8563167766472	50.756	0.2063	50.585	50.456	50.662	-0.1719	-0.0075939	-0.00052236	NaN	34.932	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26695000	+		14315	10174	8611	8659							0.02476920017352313
HSQFFQRILE	10	Unmodified	_HSQFFQRILE_					0	0	0		AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant	AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	435.56488037109375	3	435.56305	1303.66732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.806	1	13.88	13.38	14.38	0.074899								0	0	0	0.96769	1	4402	4402		0.77653	0.27058	1				14316	86	8612	8660	13756	13756					0.027632931746666145
HSQPYNYKKDS	11	Unmodified	_HSQPYNYKKDS_					0	0	0			REV__N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant	REV__N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	684.2036743164062	2	683.822941	1365.63133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.812	1	16.896	16.396	17.396	0.084467								0	0	0	0.95636	1	5605	5605		2.9952	1.151	1		+		14317	10834	8613	8661	13757	13757					-0.0368620879289665
HSRVKLTLK	9	Unmodified	_HSRVKLTLK_					0	0	0		ENST00000460731.5_1_7:77166863-77213036:+|nuORF;PTPN12|p.R407Kfs*23|1|0.07|ENSG00000127947|chr7:77626898-77626899|-/AGGCAACT|frameshift_variant;PTPN12|p.K712Sfs*5|2|0.2|ENSG00000127947|chr7:77635836-77635836|A/-|frameshift_variant;ENSG00000127947|ENST00000248594|PTPN12;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion	ENST00000460731.5_1_7:77166863-77213036:+|nuORF	ENST00000460731.5_1_7:77166863-77213036:+|nuORF	MSMS	HCT116MG_D190212_S1	1	361.2332458496094	3	361.232864	1080.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.859	1	25.859	25.359	26.359	0								0	0	0	0.76995	1	9319	9319		1.0715	0	1				14318	2982	8614	8662	13758	13758					0.139651062508392
HSSCFLFSSTQ	11	Unmodified	_HSSCFLFSSTQ_					0	0	0		ENST00000488206.5_1_1:62175075-62189407:-|nuORF	ENST00000488206.5_1_1:62175075-62189407:-|nuORF	ENST00000488206.5_1_1:62175075-62189407:-|nuORF	MSMS	HCT116MG_D190212_S2	2	622.1652221679688	2	622.274238	1242.53392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.876	1	28.56	28.06	29.06	-0.31613								0	0	0	0.95196	1	10553	10553		5.2969	0	1				14319	8311	8615	8663	13759	13759					-0.07764313993357064
HSSGFRCSCR	10	Unmodified	_HSSGFRCSCR_					0	0	0			REV__ENST00000597953.1_1_3:142719968-142720172:-|nuORF	REV__ENST00000597953.1_1_3:142719968-142720172:-|nuORF	MSMS	HCT116MG_D190212_S2	2	570.3384399414062	2	570.245292	1138.47603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.449	1	29.148	28.648	29.648	-0.30095								0	0	0	0.94746	1	10788	10788		5.2969	0.54088	1		+		14320	16731	8616	8664	13760	13760					-0.08766854399777912
HSSLFPQIQEV	11	Unmodified	_HSSLFPQIQEV_					0	0	0		ENST00000510345.2_1_4:111337808-111338090:+|nuORF	ENST00000510345.2_1_4:111337808-111338090:+|nuORF	ENST00000510345.2_1_4:111337808-111338090:+|nuORF	MSMS	HCT116MG_D190212_S2	2	428.8910827636719	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1607	1	1.1544	0.65441	1.6544	-0.0062599								0	0	0	0.9619	1	376	376		0.094841	0	1				14321	8493	8617	8665	13761	13761					0.020521672179029338
HSSPQVGH	8	Unmodified	_HSSPQVGH_					0	0	0		ENST00000551538.5_1_14:105963624-105963882:+|nuORF;ENST00000546536.5_1_14:105957646-105963882:+|nuORF	ENST00000551538.5_1_14:105963624-105963882:+|nuORF	ENST00000551538.5_1_14:105963624-105963882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	424.70379638671875	2	424.704109	847.393664	0.081984	3.4819E-05	0.25745	0.00010934	0.33943	0.00014416	424.70417054468624	18.936	0.31234	19.005	18.823	19.135	0.069159					8	5	2	0	0	0	0.78216	1	6477	6477		13.508	1.2672	1	3383400			14322	8728	8618	8666	13762	13762					-0.03613685144750889
HSTLEQADP	9	Unmodified	_HSTLEQADP_					0	0	0			REV__ENST00000507780.1_1_4:81256922-81257812:+|nuORF	REV__ENST00000507780.1_1_4:81256922-81257812:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	499.2696533203125	2	499.232896	996.451239	0.52573	0.00026246	-0.40959	-0.00020448	0.11614	5.7983E-05	499.23252671808444	25.893	0.20755	25.524	25.446	25.654	-0.36914					5	3	2	0	0	0	0.23301	1	9357	9357		10.824	2.2306	1	7594000	+		14323	16157	8619	8667	13763	13763					-0.04712887729863269
HSVFLLTKL	9	Unmodified	_HSVFLLTKL_					0	0	0			REV__ENST00000589878.5_1_19:34663659-34686187:+|nuORF	REV__ENST00000589878.5_1_19:34663659-34686187:+|nuORF	MSMS	HCT116MG_D190212_S4	4	529.322021484375	2	529.32386	1056.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.597	1	44.224	43.724	44.724	-0.37326								0	0	0	0.76699	1	16436	16436		16.942	7.5949	1		+		14324	16682	8620	8668	13764	13764					0.10711496753697247
HSVFLLTKL	9	Unmodified	_HSVFLLTKL_					0	0	0			REV__ENST00000589878.5_1_19:34663659-34686187:+|nuORF	REV__ENST00000589878.5_1_19:34663659-34686187:+|nuORF	MSMS	HCT116MG_D190212_S4	4	529.2644653320312	2	529.32386	1056.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.708	1	44.334	43.834	44.834	-0.37326								0	0	0	0.76592	1	16479	16479		21.747	9.2151	1		+		14325	16682	8620	8668	13765	13765					0.10711496753697247
HSVLIHEY	8	Unmodified	_HSVLIHEY_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	HCT116MG_D190212_S1	1	499.258544921875	2	499.258717	996.50288	0.30025	0.0001499	-0.2201	-0.00010989	0.080146	4.0014E-05	499.2586283363577	29.85	0.25983	29.85	29.685	29.945	0					6	4	2	0	0	0	0.41924	1	10946	10946		48.346	25.197	1	5484500			14326	5377	8621	8669	13766	13766					0.0044890075471357704
HSVLIHEY	8	Unmodified	_HSVLIHEY_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-SECPEP	HCT116MG_D190212_S2	2	498.7656555175781	2	499.258717	996.50288	0.085111	4.2493E-05	-0.41507	-0.00020723	-0.32996	-0.00016474	499.258398542036	30.338	0.25702	30.054	29.925	30.182	-0.28453					6	4	2	0	0	0	0.16514	1	11155	11155		61.357	40.904	1	52958000			14327	5377	8621	8669	13767	13767					0.0044890075471357704
HSVLIHEY	8	Unmodified	_HSVLIHEY_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MATCH	HCT116MG_D190212_S3	3		2	499.258717	996.50288	0.42622	0.0002128	0.38886	0.00019414	0.81508	0.00040694	499.25866845124125	30.322	0.40939	30.073	29.702	30.112	-0.24946	-0.01321	0.00059038	NaN	71.134	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8216200			14328	5377	8621	8669							0.0044890075471357704
HSVSTAPLEA	10	Unmodified	_HSVSTAPLEA_					0	0	0			REV__CCSER1|p.F428Lfs*29|1|0.15|ENSG00000184305|chr4:90309564-90309564|T/-|frameshift_variant	REV__CCSER1|p.F428Lfs*29|1|0.15|ENSG00000184305|chr4:90309564-90309564|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	506.2588806152344	2	506.258914	1010.50327	0.12007	6.0787E-05	0.080237	4.0621E-05	0.20031	0.00010141	506.2589264300388	17.947	0.3119	18.023	17.893	18.205	0.076334					11	5	3	0	0	0	0.4604	1	6085	6085		37.974	3.5723	1	12390000	+		14329	10126	8622	8670	13768	13768					-0.0015572431610735293
HSYEDPYF	8	Unmodified	_HSYEDPYF_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4;ENST00000480171.7_1_2:159519375-159537186:+|nuORF	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-SECPEP	HCT116MG_D190212_S3	3	529.2855834960938	2	529.216714	1056.41888	0.43114	0.00022817	-0.56321	-0.00029806	-0.13207	-6.9893E-05	529.2163106161571	23.597	0.99012	23.557	23.135	24.125	-0.03968					30	18	2	0	0	0	0.29766	1	8334	8334		14.582	2.341	1	7599300			14330	3856	8623	8671	13769	13769					-0.10707675132880468
HSYLYHYYK	9	Unmodified	_HSYLYHYYK_					0	0	0			REV__ENSG00000182197|ENST00000378204|EXT1	REV__ENSG00000182197|ENST00000378204|EXT1	MSMS	HCT116MG_D190212_S1	1	637.3045043945312	2	637.303655	1272.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.164	1	63.164	62.664	63.664	0								0	0	0	0.77008	1	24403	24403		0.6015	0.14316	1		+		14331	13709	8624	8672	13770	13770					-0.03263469636726768
HTACIEQLEKI	11	Unmodified	_HTACIEQLEKI_					0	0	0		ENSG00000157680|ENST00000614521|DGKI;nc|ENSG00000157680|O75912|DGKI	ENSG00000157680|ENST00000614521|DGKI	ENSG00000157680|ENST00000614521|DGKI	MSMS	HCT116MG_D190212_S2	2	429.0885925292969	3	428.892067	1283.65437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1059	1	3.0655	2.5655	3.5655	-0.040353								0	0	0	0.96121	1	990	990		0.45452	0.21867	1				14332	4340	8625	8673	13771	13771					0.023890940002274874
HTAVVSFLAA	10	Unmodified	_HTAVVSFLAA_					0	0	0		ENSG00000129355|ENST00000393599|CDKN2D	ENSG00000129355|ENST00000393599|CDKN2D	ENSG00000129355|ENST00000393599|CDKN2D	MSMS	HCT116MG_D190212_S4	4	508.2803955078125	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.196	1	38.815	38.315	39.315	-0.38055								0	0	0	0.90892	1	14393	14393		13.906	0.39817	1				14333	3033	8626	8674	13772	13772					0.04313760305853975
HTDCPGHADY	10	Carbamidomethyl (C)	_HTDC(Carbamidomethyl (C))PGHADY_	HTDC(1)PGHADY		HTDC(220)PGHADY		0	1	0		ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	MULTI-MSMS	HCT116MG_D190212_S1	1	586.7252197265625	2	586.724912	1171.43527	0.64832	0.00038039	-0.096455	-5.6593E-05	0.55187	0.00032379	586.7247703810682	18.101	0.31298	18.101	17.933	18.246	0					18	5	4	0	0	0	9.3849E-11	2	6208	6164;6208		223.06	196.72	1	12891000			14334	5523	8627	8675	13773;13774	13774	33				-0.14358917238428148
HTDCPGHADY	10	Carbamidomethyl (C)	_HTDC(Carbamidomethyl (C))PGHADY_	HTDC(1)PGHADY		HTDC(110)PGHADY		0	1	0		ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	MULTI-MSMS	HCT116MG_D190212_S2	2	586.7247924804688	2	586.724912	1171.43527	0.15333	8.9965E-05	-0.24227	-0.00014214	-0.088935	-5.218E-05	586.7248020911201	18.715	0.364	18.352	18.165	18.529	-0.36325					18	6	4	0	0	0	0.025359	1	6450	6450		110.67	91.236	1	38086000			14335	5523	8627	8675	13775	13775	33				-0.14358917238428148
HTDCPGHADY	10	Unmodified	_HTDCPGHADY_					0	0	0		ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2147216796875	2	558.21418	1114.41381	0.34233	0.00019109	-0.17088	-9.5387E-05	0.17145	9.5704E-05	558.213963930548	20.483	0.3717	20.103	19.917	20.289	-0.37949					11	6	2	0	0	0	0.0045361	1	7169	7169		168.66	143.98	1	22307000			14336	5523	8627	8676	13776	13776					-0.13882302267120394
HTDDPLTW	8	Unmodified	_HTDDPLTW_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	HCT116MG_D190212_S2	2	492.7250671386719	2	492.724707	983.43486	0.5781	0.00028484	0.22724	0.00011197	0.80534	0.00039681	492.7247997787488	47.026	0.66968	46.904	46.563	47.233	-0.12175					26	12	3	0	0	0	0.21487	1	17977	17977		70.716	30.267	1	24275000			14337	2175	8628	8677	13777	13777					-0.057519688959587256
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	HCT116MG_D190212_S1	1	631.7700805664062	2	631.769842	1261.52513	0.54431	0.00034388	-0.21691	-0.00013704	0.3274	0.00020684	631.7696793124308	50.083	0.61855	50.083	49.699	50.317	0					28	11	4	0	0	0	0.020806	1	19065	19065		118.89	97.358	1	159660000			14338	2175	8629	8678	13778	13778					-0.09516964358181212
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	HCT116MG_D190212_S2	2	631.770263671875	2	631.769842	1261.52513	0.44488	0.00028106	-0.066298	-4.1885E-05	0.37858	0.00023918	631.7697580458872	50.286	0.82923	50.114	49.729	50.558	-0.17191					46	15	4	0	0	0	0.018611	2	19207	19172;19207		123.45	95.822	1	683160000			14339	2175	8629	8678	13779;13780	13780					-0.09516964358181212
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	HCT116MG_D190212_S2	2	1262.5340576171875	1	1262.53241	1261.52513	0.51665	0.00065229	-0.073666	-9.3005E-05	0.44298	0.00055928	1262.5324485950862	50.234	0.46638	50.062	49.832	50.298	-0.1719					19	8	3	0	0	0	0.010342	1	19256	19256		147.06	103.2	1	70748000			14340	2175	8629	8678	13781	13781					-0.09516964358181212
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	HCT116MG_D190212_S3	3	631.7703247070312	2	631.769842	1261.52513	0.40334	0.00025482	0.20796	0.00013138	0.6113	0.0003862	631.7699737329639	50.474	0.41755	50.16	49.916	50.333	-0.31381					17	7	3	0	0	0	0.027291	1	19038	19038		107.19	85.65	1	11271000			14341	2175	8629	8678	13782	13782					-0.09516964358181212
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1262.53241	1261.52513	0.51836	0.00065445	0.37506	0.00047353	0.89342	0.001128	1262.5324389244934	50.067	0.30905	50.067	49.905	50.214	0	0.0025897	0.00027249	NaN	147.06	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6520600			14342	2175	8629	8678							-0.09516964358181212
HTDHHMFFDY	10	Unmodified	_HTDHHMFFDY_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	MULTI-MSMS	HCT116MG_D190212_S2	2	450.8515625	3	450.517112	1348.52951	-0.3868	-0.00017426	0.21947	9.8873E-05	-0.16734	-7.5388E-05	450.5173699973122	43.248	0.25776	43.174	43.045	43.303	-0.073376					11	4	3	0	0	0	0.18147	1	16423	16423		61.09	51.326	1	27180000			14343	2226	8630	8679	13783	13783					-0.13081778416267298
HTDHHMFFDY	10	Unmodified	_HTDHHMFFDY_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	MULTI-SECPEP	HCT116MG_D190212_S2	2	675.7732543945312	2	675.272029	1348.52951	-0.27119	-0.00018312	0.14301	9.6569E-05	-0.12818	-8.6556E-05	675.2718702396938	43.275	0.25776	43.202	43.045	43.303	-0.073372					9	4	3	0	0	0	0.069357	1	16428	16428		99.755	86.713	1	18978000			14344	2226	8630	8679	13784	13784					-0.13081778416267298
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S1	1	382.8765563964844	3	382.876634	1145.60807	0.012579	4.8163E-06	-0.088094	-3.3729E-05	-0.075515	-2.8913E-05	382.87661803916126	26.056	0.6782	26.056	25.823	26.501	0					35	12	5	0	0	0	0.0024989	1	9379	9379		157.49	66.403	1	518650000			14345	1915	8631	8680	13785	13785					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S1	1	573.8116455078125	2	573.811313	1145.60807	0.51712	0.00029673	0.11438	6.5631E-05	0.6315	0.00036236	573.8113564896189	26.058	0.4697	26.058	25.875	26.345	0					20	8	3	0	0	0	0.0024989	1	9382	9382		184.36	91.19	1	256890000			14346	1915	8631	8680	13786	13786					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S1	1	1146.615478515625	1	1146.61535	1145.60807	0.75452	0.00086515	-0.32449	-0.00037206	0.43003	0.00049308	1146.61482122711	26.058	0.15664	26.058	25.927	26.084	0					4	2	2	0	0	0	0.0068642	1	9408	9408		121.35	54.889	1	6426300			14347	1915	8631	8680	13787	13787					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S2	2	382.8765563964844	3	382.876634	1145.60807	-0.15885	-6.0821E-05	0.013747	5.2632E-06	-0.14511	-5.5558E-05	382.87668661715225	26.463	0.51978	26.102	25.921	26.441	-0.36164					35	9	5	0	0	0	0.0038512	1	9556	9556		139.38	66.182	1	1442500000			14348	1915	8631	8680	13788	13788					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S2	2	573.811767578125	2	573.811313	1145.60807	0.29444	0.00016895	0.20518	0.00011773	0.49962	0.00028669	573.8114330832763	26.463	0.57106	26.101	25.87	26.441	-0.36164					34	10	5	0	0	0	0.0001093	1	9561	9561		197.81	119.08	1	965490000			14349	1915	8631	8680	13789	13789					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S2	2	1146.615478515625	1	1146.61535	1145.60807	0.46418	0.00053223	-0.057707	-6.6167E-05	0.40647	0.00046606	1146.6150328471713	26.463	0.25921	26.102	25.972	26.232	-0.36164					10	4	3	0	0	0	0.0035136	1	9585	9585		168.54	105.96	1	47273000			14350	1915	8631	8680	13790	13790					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S3	3	382.8766174316406	3	382.876634	1145.60807	0.056055	2.1462E-05	-0.12207	-4.6739E-05	-0.066018	-2.5277E-05	382.87657588853887	26.17	0.52126	26.042	25.859	26.38	-0.12795					29	9	4	0	0	0	0.0034297	1	9359	9359		135.87	58.826	1	371210000			14351	1915	8631	8680	13791	13791					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S3	3	573.8121948242188	2	573.811313	1145.60807	0.58858	0.00033774	-0.012922	-7.4149E-06	0.57566	0.00033032	573.8112445764248	26.17	0.52126	26.042	25.859	26.38	-0.12795					23	9	4	0	0	0	0.0024989	1	9372	9372		184.36	91.19	1	164510000			14352	1915	8631	8680	13792	13792					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S4	4	382.8765869140625	3	382.876634	1145.60807	-0.051888	-1.9867E-05	-0.050692	-1.9409E-05	-0.10258	-3.9276E-05	382.8765840743468	26.456	0.46791	26.156	25.974	26.441	-0.30087					21	8	4	0	0	0	0.0024989	1	9413	9413		157.49	66.403	1	107430000			14353	1915	8631	8680	13793	13793					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	HCT116MG_D190212_S4	4	573.8114624023438	2	573.811313	1145.60807	0.39653	0.00022753	0.16321	9.3652E-05	0.55974	0.00032118	573.811308887712	26.456	0.36401	26.156	25.974	26.338	-0.30087					16	6	4	0	0	0	0.0035417	1	9426	9426		171.46	99.542	1	53191000			14354	1915	8631	8680	13794	13794					0.04109397160482331
HTDIRSQLRY	10	Unmodified	_HTDIRSQLRY_					0	0	0		RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B;nc|ENSG00000111785|Q9NVN3-3|RIC8B	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	644.8416748046875	2	644.841468	1287.66838	0.95727	0.00061729	-0.010173	-6.5597E-06	0.9471	0.00061073	644.8411913870492	28.821	0.20889	28.821	28.694	28.903	0					7	3	3	0	0	0	0.065434	1	10536	10536		74.2	36.024	1	11261000			14355	2315	8632	8681	13795	13795					0.03605507543556996
HTDIRSQLRY	10	Unmodified	_HTDIRSQLRY_					0	0	0		RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B;nc|ENSG00000111785|Q9NVN3-3|RIC8B	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	430.2297058105469	3	430.230071	1287.66838	0.08846	3.8058E-05	-0.35943	-0.00015464	-0.27097	-0.00011658	430.229840007586	29.205	0.25492	28.888	28.709	28.964	-0.31613					10	4	3	0	0	0	0.0001209	1	10690	10690		194.76	161.86	1	127250000			14356	2315	8632	8681	13796	13796					0.03605507543556996
HTDIRSQLRY	10	Unmodified	_HTDIRSQLRY_					0	0	0		RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B;nc|ENSG00000111785|Q9NVN3-3|RIC8B	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	644.8411254882812	2	644.841468	1287.66838	0.68003	0.00043851	-0.47393	-0.00030561	0.2061	0.0001329	644.8410382009005	29.205	0.20351	28.888	28.761	28.964	-0.31613					8	3	3	0	0	0	0.029228	2	10698	10698;10700		111.31	67.614	1	84719000			14357	2315	8632	8681	13797;13798	13797					0.03605507543556996
HTDIRSQLRY	10	Unmodified	_HTDIRSQLRY_					0	0	0		RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B;nc|ENSG00000111785|Q9NVN3-3|RIC8B	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	430.22979736328125	3	430.230071	1287.66838	0.25419	0.00010936	-0.21826	-9.3903E-05	0.035926	1.5456E-05	430.2298146983105	29.242	0.26008	29.02	28.838	29.098	-0.22195					6	4	2	0	0	0	0.66854	1	10644	10644		23.016	15.979	1	5709800			14358	2315	8632	8681	13799	13799					0.03605507543556996
HTDIRSQLRY	10	Unmodified	_HTDIRSQLRY_					0	0	0		RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B;nc|ENSG00000111785|Q9NVN3-3|RIC8B	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	430.230071	1287.66838	0.26969	0.00011603	-0.62406	-0.00026849	-0.35438	-0.00015246	430.2297353045391	28.825	0.31373	28.825	28.641	28.955	0	-0.086301	-9.464E-05	NaN	194.76	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29501000			14359	2315	8632	8681							0.03605507543556996
HTDLPVSV	8	Unmodified	_HTDLPVSV_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;COPS6|p.T158P|1|0.08|ENSG00000168090|chr7:100090640-100090640|A/C|missense_variant;ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENSG00000168090|ENST00000303904|COPS6;ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	MSMS	HCT116MG_D190212_S2	2	434.2320251464844	2	434.232168	866.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.75	1	38.665	38.165	39.165	-0.084618								0	0	0	0.62663	1	14563	14563		36.044	11.37	1				14360	4983;8129	8633	8682	13800	13800					0.01121522972061939
HTDMSSSSY	9	Unmodified	_HTDMSSSSY_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;nc|ENSG00000120071|Q7Z3B3-4|KANSL1;ENST00000576870.5_2_17:44108844-44117263:-|nuORF;nc|ENSG00000120071|Q7Z3B3-2|KANSL1;ENST00000572218.5_2_17:44108844-44117263:-|nuORF;KANSL1|p.Q968Sfs*46|1|0.27|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-MSMS	HCT116MG_D190212_S1	1	507.69525146484375	2	507.695289	1013.37602	0.45342	0.0002302	-0.20212	-0.00010262	0.2513	0.00012758	507.69505706916794	21.149	0.26752	21.149	21.012	21.279	0					9	4	3	0	0	0	0.057285	1	7437	7437		71.134	41.293	1	7789200			14361	2683	8634	8683	13801	13801					-0.13012813252578326
HTDMSSSSY	9	Unmodified	_HTDMSSSSY_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;nc|ENSG00000120071|Q7Z3B3-4|KANSL1;ENST00000576870.5_2_17:44108844-44117263:-|nuORF;nc|ENSG00000120071|Q7Z3B3-2|KANSL1;ENST00000572218.5_2_17:44108844-44117263:-|nuORF;KANSL1|p.Q968Sfs*46|1|0.27|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-MSMS	HCT116MG_D190212_S2	2	507.69549560546875	2	507.695289	1013.37602	0.28359	0.00014398	-0.010635	-5.3993E-06	0.27296	0.00013858	507.69519247860626	21.637	0.25964	21.252	21.115	21.375	-0.38503					10	4	3	0	0	0	0.057285	1	7635	7635		71.134	39.017	1	16480000			14362	2683	8634	8683	13802	13802					-0.13012813252578326
HTDMSSSSY	9	Unmodified	_HTDMSSSSY_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;nc|ENSG00000120071|Q7Z3B3-4|KANSL1;ENST00000576870.5_2_17:44108844-44117263:-|nuORF;nc|ENSG00000120071|Q7Z3B3-2|KANSL1;ENST00000572218.5_2_17:44108844-44117263:-|nuORF;KANSL1|p.Q968Sfs*46|1|0.27|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MSMS	HCT116MG_D190212_S3	3	507.6953430175781	2	507.695289	1013.37602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.087	1	21.122	20.622	21.622	0.034473								0	0	0	0.047256	1	7330	7330		71.134	29.039	1				14363	2683	8634	8683	13803	13803					-0.13012813252578326
HTDPVHLYK	9	Unmodified	_HTDPVHLYK_					0	0	0		IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	IQGAP3|p.Q1205Sfs*31|1|0.4|ENSG00000183856|chr1:156534628-156534628|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	370.5291748046875	3	370.529458	1108.56654	-0.11298	-4.1863E-05	-0.65387	-0.00024228	-0.76685	-0.00028414	370.5291915375956	24.515	0.2608	24.135	23.979	24.239	-0.38003					7	4	2	0	0	0	0.035298	1	8812	8812		81.915	58.125	1	9009500			14364	5746	8635	8684	13804	13804					0.01660261191796053
HTDTTVKF	8	Unmodified	_HTDTTVKF_					0	0	0		TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	474.7428283691406	2	474.742899	947.471246	0.28611	0.00013583	-0.033077	-1.5703E-05	0.25303	0.00012013	474.742733326145	27.93	0.36431	27.93	27.8	28.164	0					8	6	2	0	0	0	0.043218	1	10170	10170		131.27	76.494	1	27106000			14365	3154;1348	8636	8685	13805	13805					-0.004590919992324416
HTDTTVKF	8	Unmodified	_HTDTTVKF_					0	0	0		TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	474.74310302734375	2	474.742899	947.471246	0.22348	0.0001061	-0.054852	-2.604E-05	0.16863	8.0056E-05	474.74286530986933	28.54	0.25679	28.21	28.081	28.338	-0.32987					9	4	3	0	0	0	0.014149	1	10418	10418		158.2	96.845	1	52447000			14366	3154;1348	8636	8685	13806	13806					-0.004590919992324416
HTDTTVKF	8	Unmodified	_HTDTTVKF_					0	0	0		TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	474.74298095703125	2	474.742899	947.471246	0.21818	0.00010358	0.046939	2.2284E-05	0.26511	0.00012586	474.74283330417984	28.405	0.3651	28.199	28.02	28.385	-0.20593					14	6	3	0	0	0	0.030564	1	10267	10267		144.35	89.577	1	24271000			14367	3154;1348	8636	8685	13807	13807					-0.004590919992324416
HTDTTVKF	8	Unmodified	_HTDTTVKF_					0	0	0		TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	474.7431640625	2	474.742899	947.471246	0.38776	0.00018409	-0.18645	-8.8516E-05	0.20131	9.5573E-05	474.7427861555384	28.681	0.31128	28.34	28.159	28.47	-0.34059					10	5	3	0	0	0	0.043218	1	10328	10328		131.27	60.134	1	10468000			14368	3154;1348	8636	8685	13808	13808					-0.004590919992324416
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.Q251Rfs*22|1|0.24|ENSG00000196498|chr12:124457117-124457117|G/-|frameshift_variant;NCOR2|p.S152Afs*21|1|0.21|ENSG00000196498|chr12:124473090-124473090|G/-|frameshift_variant;ENST00000542565.1_1_12:124970985-124979836:-|nuORF;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	HCT116MG_D190212_S1	1	523.7620849609375	2	523.761289	1045.50803	0.44819	0.00023474	0.23704	0.00012415	0.68523	0.0003589	523.7614933556737	45.686	0.31468	45.686	45.503	45.818	0					13	5	3	0	0	0	0.23138	1	17360	17360		37.974	11.09	1	36211000			14369	6077	8637	8686	13809	13809					-0.012908401733284336
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.Q251Rfs*22|1|0.24|ENSG00000196498|chr12:124457117-124457117|G/-|frameshift_variant;NCOR2|p.S152Afs*21|1|0.21|ENSG00000196498|chr12:124473090-124473090|G/-|frameshift_variant;ENST00000542565.1_1_12:124970985-124979836:-|nuORF;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	HCT116MG_D190212_S2	2	524.2203979492188	2	523.761289	1045.50803	0.36094	0.00018905	0.37233	0.00019501	0.73328	0.00038406	523.7615638129041	45.683	0.30795	45.581	45.402	45.71	-0.1014					8	5	2	0	0	0	0.057285	2	17417	17417;17423		71.134	16.36	1	34732000			14370	6077	8637	8686	13810;13811	13810					-0.012908401733284336
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.Q251Rfs*22|1|0.24|ENSG00000196498|chr12:124457117-124457117|G/-|frameshift_variant;NCOR2|p.S152Afs*21|1|0.21|ENSG00000196498|chr12:124473090-124473090|G/-|frameshift_variant;ENST00000542565.1_1_12:124970985-124979836:-|nuORF;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MSMS	HCT116MG_D190212_S3	3	523.7621459960938	2	523.761289	1045.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.089	1	45.777	45.277	46.277	-0.31237								0	0	0	0.047256	1	17275	17275		71.134	29.039	1				14371	6077	8637	8686	13812	13812					-0.012908401733284336
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.Q251Rfs*22|1|0.24|ENSG00000196498|chr12:124457117-124457117|G/-|frameshift_variant;NCOR2|p.S152Afs*21|1|0.21|ENSG00000196498|chr12:124473090-124473090|G/-|frameshift_variant;ENST00000542565.1_1_12:124970985-124979836:-|nuORF;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	HCT116MG_D190212_S4	4	523.761474609375	2	523.761289	1045.50803	0.44493	0.00023303	-0.027918	-1.4622E-05	0.41701	0.00021841	523.7612399879914	46.019	0.26319	45.647	45.501	45.765	-0.37206					12	10	2	0	0	0	0.023611	1	16997	16997		92.822	35.351	1	19186000			14372	6077	8637	8686	13813	13813					-0.012908401733284336
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2;NCOR2|p.R1060Vfs*3|1|0.23|ENSG00000196498|chr12:124356705-124356705|G/-|frameshift_variant;NCOR2|p.L1405*|1|0.44|ENSG00000196498|chr12:124346710-124346710|G/-|frameshift_variant;NCOR2|p.H1302Mfs*12|2|0.25|ENSG00000196498|chr12:124348255-124348255|G/-|frameshift_variant;NCOR2|p.R986Gfs*77|1|0.18|ENSG00000196498|chr12:124362270-124362270|G/-|frameshift_variant;NCOR2|p.P1047Lfs*16|1|0.43|ENSG00000196498|chr12:124356743-124356743|G/-|frameshift_variant;NCOR2|p.E841Rfs*123|1|0.06|ENSG00000196498|chr12:124372308-124372308|C/-|frameshift_variant;NCOR2|p.Q251Rfs*22|1|0.24|ENSG00000196498|chr12:124457117-124457117|G/-|frameshift_variant;NCOR2|p.S152Afs*21|1|0.21|ENSG00000196498|chr12:124473090-124473090|G/-|frameshift_variant;ENST00000542565.1_1_12:124970985-124979836:-|nuORF;NCOR2|p.I976Sfs*87|5|0.39|ENSG00000196498|chr12:124363682-124363682|G/-|frameshift_variant	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	523.761289	1045.50803	0.5222	0.00027351	-0.058084	-3.0422E-05	0.46412	0.00024309	523.7611884770268	45.953	0.31617	45.642	45.461	45.777	-0.31094	0.0030105	-0.00016347	NaN	92.822	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59531000			14373	6077	8637	8686							-0.012908401733284336
HTEPNACVSNY	11	Unmodified	_HTEPNACVSNY_					0	0	0			REV__MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant	REV__MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	617.7613525390625	2	617.761494	1233.50844	0.4162	0.00025711	0.015925	9.8376E-06	0.43213	0.00026695	617.7614149974366	19.364	0.2608	18.995	18.836	19.096	-0.3695					11	4	3	0	0	0	0.60456	1	6716	6716		34.932	9.5328	1	10745000	+		14374	17037	8638	8687	13814	13814					-0.09897788515786488
HTEPNACVSNY	11	Unmodified	_HTEPNACVSNY_					0	0	0			REV__MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant	REV__MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	617.761494	1233.50844	0.45922	0.00028369	-0.25484	-0.00015743	0.20437	0.00012625	617.7614248997413	18.748	0.20848	18.748	18.61	18.819	0	-0.12318	-5.7965E-05	NaN	34.932	9	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6540600	+		14375	17037	8638	8687							-0.09897788515786488
HTEPNACVSNY	11	Unmodified	_HTEPNACVSNY_					0	0	0			REV__MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant	REV__MSTN|p.K153Ffs*44|1|0.05|ENSG00000138379|chr2:190060352-190060353|-/GAAA|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	617.761494	1233.50844	0.4162	0.00025711	0.015925	9.8376E-06	0.43213	0.00026695	617.7614149974366	19.364	0.2608	18.995	18.836	19.096	-0.3695	0.12318	0.00027657	NaN	34.932	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10745000	+		14376	17037	8638	8687							-0.09897788515786488
HTERRGHIY	9	Unmodified	_HTERRGHIY_					0	0	0		PRKCB|p.R161H|1|0.09|ENSG00000166501|chr16:24035500-24035500|G/A|missense_variant	PRKCB|p.R161H|1|0.09|ENSG00000166501|chr16:24035500-24035500|G/A|missense_variant	PRKCB|p.R161H|1|0.09|ENSG00000166501|chr16:24035500-24035500|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	584.802490234375	2	584.802146	1167.58974	0.70851	0.00041434	0.11005	6.436E-05	0.81857	0.0004787	584.8021570050852	26.054	0.20878	26.054	25.927	26.136	0					9	3	3	0	0	0	0.39921	1	9403	9403		30.637	30.637	1	15307000			14377	9780	8639	8688	13815	13815					0.012647000291508448
HTEVPARNLY	10	Unmodified	_HTEVPARNLY_					0	0	0		ENST00000477970.1_1_1:44078891-44086093:+|nuORF;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	ENST00000477970.1_1_1:44078891-44086093:+|nuORF	ENST00000477970.1_1_1:44078891-44086093:+|nuORF	MSMS	HCT116MG_D190212_S2	2	600.312255859375	2	600.312012	1198.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.317	1	27.987	27.487	28.487	-0.32987								0	0	0	0.065026	1	10324	10324		90.135	54.091	1				14378	3782	8640	8689	13816	13816					0.01811031249235384
HTGAKAASP	9	Unmodified	_HTGAKAASP_					0	0	0		ENST00000495957.1_1_8:22459568-22459924:+|nuORF;nc|nan|Q8NAV2-2|C8orf58;ENSG00000241852|ENST00000289989|C8orf58	ENST00000495957.1_1_8:22459568-22459924:+|nuORF	ENST00000495957.1_1_8:22459568-22459924:+|nuORF	MSMS	HCT116MG_D190212_S1	1	420.53326416015625	2	420.222134	838.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.014	1	32.014	31.514	32.514	0								0	0	0	0.76603	1	11799	11799		14.838	0.25658	1				14379	6546	8641	8690	13817	13817					0.004037720320980043
HTIRSDTVDYT	11	Unmodified	_HTIRSDTVDYT_					0	0	0			REV__nc|ENSG00000100029|O00541-2|PES1	REV__nc|ENSG00000100029|O00541-2|PES1	MSMS	HCT116MG_D190212_S3	3	436.54486083984375	3	436.545724	1306.61534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.403	1	35.103	34.603	35.603	-0.29922								0	0	0	0.94851	1	13066	13066		3.5927	0.52041	1		+		14380	11057	8642	8691	13818	13818					-0.02569915029744152
HTLKIKDAR	9	Unmodified	_HTLKIKDAR_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22;ENSG00000179057|ENST00000513874|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MSMS	HCT116MG_D190212_S1	1	361.1942138671875	3	361.220735	1080.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.498	1	58.498	57.998	58.998	0								0	0	0	0.76991	1	22536	22536		1.1933	0.12188	1				14381	5534	8643	8692	13819	13819					0.10328229354126961
HTLMHRQL	8	Unmodified	_HTLMHRQL_					0	0	0			REV__nc|ENSG00000124782|Q92766-5|RREB1	REV__nc|ENSG00000124782|Q92766-5|RREB1	MSMS	HCT116MG_D190212_S4	4	518.28125	2	518.27946	1034.54437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.425	1	32.046	31.546	32.546	-0.37924								0	0	0	0.8837	1	11809	11809		7.9102	0	1		+		14382	11797	8644	8693	13820	13820					0.028477582423874992
HTLRYNVL	8	Unmodified	_HTLRYNVL_					0	0	0		OR10H1|p.P129T|1|0.36|ENSG00000186723|chr19:15807653-15807653|G/T|missense_variant	OR10H1|p.P129T|1|0.36|ENSG00000186723|chr19:15807653-15807653|G/T|missense_variant	OR10H1|p.P129T|1|0.36|ENSG00000186723|chr19:15807653-15807653|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	508.2876281738281	2	508.287808	1014.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.913	1	57.738	57.238	58.238	-0.17494								0	0	0	0.8837	1	22370	22370		8.5933	0	1				14383	9716	8645	8694	13821	13821					0.054365823999773966
HTLSLTDYA	9	Unmodified	_HTLSLTDYA_					0	0	0		ENSG00000078399|ENST00000343483|HOXA9	ENSG00000078399|ENST00000343483|HOXA9	ENSG00000078399|ENST00000343483|HOXA9	MULTI-MSMS	HCT116MG_D190212_S1	1	510.754638671875	2	510.753464	1019.49238	0.48768	0.00024908	0.30916	0.00015791	0.79684	0.00040699	510.75361331824706	35.204	0.30703	35.204	35.064	35.371	0					11	5	3	0	0	0	0.1037	1	13083	13083		57.471	6.6163	1	35242000			14384	1365	8646	8695	13822	13822					-0.016591266904015356
HTLSLTDYA	9	Unmodified	_HTLSLTDYA_					0	0	0		ENSG00000078399|ENST00000343483|HOXA9	ENSG00000078399|ENST00000343483|HOXA9	ENSG00000078399|ENST00000343483|HOXA9	MULTI-MSMS	HCT116MG_D190212_S2	2	510.75384521484375	2	510.753464	1019.49238	0.25821	0.00013188	-0.097381	-4.9737E-05	0.16083	8.2146E-05	510.7533212171961	35.302	0.35103	35.159	34.984	35.335	-0.14245					16	6	4	0	0	0	0.1037	1	13155	13155		57.471	1.2943	1	217520000			14385	1365	8646	8695	13823	13823					-0.016591266904015356
HTLSLTDYA	9	Unmodified	_HTLSLTDYA_					0	0	0		ENSG00000078399|ENST00000343483|HOXA9	ENSG00000078399|ENST00000343483|HOXA9	ENSG00000078399|ENST00000343483|HOXA9	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	510.753464	1019.49238	0.48768	0.00024908	0.30916	0.00015791	0.79684	0.00040699	510.75361331824706	35.204	0.30703	35.204	35.064	35.371	0	0.022241	0.00033901	NaN	57.471	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35242000			14386	1365	8646	8695							-0.016591266904015356
HTLSLTDYA	9	Unmodified	_HTLSLTDYA_					0	0	0		ENSG00000078399|ENST00000343483|HOXA9	ENSG00000078399|ENST00000343483|HOXA9	ENSG00000078399|ENST00000343483|HOXA9	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	510.753464	1019.49238	0.25821	0.00013188	-0.097381	-4.9737E-05	0.16083	8.2146E-05	510.7533212171961	35.302	0.35103	35.159	34.984	35.335	-0.14245	-0.022241	-7.6272E-05	NaN	57.471	16	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217520000			14387	1365	8646	8695							-0.016591266904015356
HTMFSIPPGPA	11	Unmodified	_HTMFSIPPGPA_					0	0	0		ENST00000267406.10_1_14:24898369-24898639:-|nuORF	ENST00000267406.10_1_14:24898369-24898639:-|nuORF	ENST00000267406.10_1_14:24898369-24898639:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	577.78466796875	2	577.786784	1153.55902	0.55673	0.00032167	-0.13518	-7.8106E-05	0.42155	0.00024357	577.786598983408	22.319	0.72791	21.933	21.426	22.154	-0.3852					27	13	3	0	0	0	0.70073	1	7870	7870		21.537	1.0834	1	117510000			14388	6908	8647	8696	13824	13824					-0.011622144001194101
HTPAEEAG	8	Unmodified	_HTPAEEAG_					0	0	0		ENST00000572440.1_1_17:44055640-44055811:+|nuORF;ENST00000576518.1_1_17:44055640-44101534:+|nuORF	ENST00000572440.1_1_17:44055640-44055811:+|nuORF	ENST00000572440.1_1_17:44055640-44055811:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	811.2728271484375	1	811.358073	810.350796	0.83021	0.00067359	-0.056623	-4.5942E-05	0.77358	0.00062765	811.3581500565222	18.428	0.20828	18.428	18.298	18.506	0					5	3	2	0	0	0	0.31855	1	6297	6297		13.508	9.5635	1	2140500			14389	8902	8648	8697	13825	13825					-0.06196499992847748
HTPINTHTV	9	Unmodified	_HTPINTHTV_					0	0	0		ENST00000313349.3_1_2:64862240-64862327:-|nuORF	ENST00000313349.3_1_2:64862240-64862327:-|nuORF	ENST00000313349.3_1_2:64862240-64862327:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	510.26715087890625	2	510.267073	1018.51959	0.45982	0.00023463	-0.21526	-0.00010984	0.24456	0.00012479	510.26695125629493	14.313	0.39816	14.313	14.252	14.65	0					13	7	4	0	0	0	0.31596	1	4696	4696		29.082	0	1	8416000			14390	7072	8649	8698	13826	13826					0.011074016406723786
HTRPRLRLVR	10	Unmodified	_HTRPRLRLVR_					0	0	0			REV__ENST00000457056.5_1_X:102003757-102003874:+|nuORF	REV__ENST00000457056.5_1_X:102003757-102003874:+|nuORF	MSMS	HCT116MG_D190212_S3	3	652.4116821289062	2	652.412729	1302.8109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.777	1	57.503	57.003	58.003	-0.27434								0	0	0	0.96937	1	21964	21964		0.40072	0	1		+		14391	15755	8650	8699	13827	13827					0.1716118479623674
HTSAEEEEP	9	Unmodified	_HTSAEEEEP_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-3|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-MSMS	HCT116MG_D190212_S3	3	514.7120361328125	2	514.711993	1027.40943	0.19513	0.00010044	0.0028973	1.4913E-06	0.19803	0.00010193	514.7119517714823	19.612	0.31252	19.672	19.542	19.854	0.05983					10	5	2	0	0	0	0.51829	1	6753	6753		15.847	15.847	1	8605000			14392	3992	8651	8700	13828	13828					-0.10317488209011572
HTSWMENVQS	10	Unmodified	_HTSWMENVQS_					0	0	0			REV__ENST00000400331.9_1_7:20201474-20203982:-|nuORF	REV__ENST00000400331.9_1_7:20201474-20203982:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	609.7637939453125	2	609.764037	1217.51352	0.58817	0.00035865	-0.2853	-0.00017396	0.30288	0.00018468	609.7638576324426	25.935	0.26135	25.935	25.77	26.032	0					13	4	4	0	0	0	0.58749	1	9343	9343		29.082	1.4528	1	40225000	+		14393	15389	8652	8701	13829	13829					-0.08653484653154919
HTVPEPSPY	9	Unmodified	_HTVPEPSPY_					0	0	0		ENST00000378685.8_2_7:128461898-128462141:+|nuORF	ENST00000378685.8_2_7:128461898-128462141:+|nuORF	ENST00000378685.8_2_7:128461898-128462141:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	514.2495727539062	2	513.748182	1025.48181	0.33119	0.00017015	-0.26607	-0.00013669	0.065121	3.3456E-05	513.7479974418254	30.096	0.29878	30.096	29.945	30.244	0					11	5	3	0	0	0	0.13706	3	11031	11031;11035;11040		50.855	12.881	1	23163000			14394	7544	8653	8702	13830;13831;13832	13830					-0.029911093447935855
HTVPEPSPY	9	Unmodified	_HTVPEPSPY_					0	0	0		ENST00000378685.8_2_7:128461898-128462141:+|nuORF	ENST00000378685.8_2_7:128461898-128462141:+|nuORF	ENST00000378685.8_2_7:128461898-128462141:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7478637695312	2	513.748182	1025.48181	-0.061571	-3.1632E-05	-0.17477	-8.979E-05	-0.23635	-0.00012142	513.7481349524095	30.44	0.25589	30.156	30.028	30.284	-0.28453					8	4	2	0	0	0	0.19218	1	11197	11197		42.095	7.9921	1	45683000			14395	7544	8653	8702	13833	13833					-0.029911093447935855
HTVPEPSPY	9	Unmodified	_HTVPEPSPY_					0	0	0		ENST00000378685.8_2_7:128461898-128462141:+|nuORF	ENST00000378685.8_2_7:128461898-128462141:+|nuORF	ENST00000378685.8_2_7:128461898-128462141:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	513.7489013671875	2	513.748182	1025.48181	0.14521	7.4601E-05	0.53159	0.0002731	0.6768	0.0003477	513.7483941967008	30.556	0.26083	30.306	30.251	30.511	-0.24946					12	8	2	0	0	0	0.2682	1	11130	11130		34.102	0	1	9605200			14396	7544	8653	8702	13834	13834					-0.029911093447935855
HTVPEPSPY	9	Unmodified	_HTVPEPSPY_					0	0	0		ENST00000378685.8_2_7:128461898-128462141:+|nuORF	ENST00000378685.8_2_7:128461898-128462141:+|nuORF	ENST00000378685.8_2_7:128461898-128462141:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	513.748182	1025.48181	0.14521	7.4601E-05	0.53159	0.0002731	0.6768	0.0003477	513.7483941967008	30.556	0.26083	30.306	30.251	30.511	-0.24946	0.12039	0.00046584	NaN	50.855	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9605200			14397	7544	8653	8702							-0.029911093447935855
HTVRCILDA	9	Unmodified	_HTVRCILDA_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MSMS	HCT116MG_D190212_S2	2	514.2711791992188	2	514.271301	1026.52805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.995	1	32.784	32.284	33.284	-0.21135								0	0	0	0.76592	1	12228	12228		15.248	0.41021	1				14398	2646	8654	8703	13835	13835					0.01584632285630505
HVASSPAVPQE	11	Unmodified	_HVASSPAVPQE_					0	0	0		nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.R976Kfs*8|1|0.4|ENSG00000120549|chr10:24527957-24527958|-/A|frameshift_variant;KIAA1217|p.R976Gfs*16|1|0.31|ENSG00000120549|chr10:24527958-24527958|A/-|frameshift_variant;KIAA1217|p.G1042Efs*92|1|0.09|ENSG00000120549|chr10:24531867-24531867|G/-|frameshift_variant;KIAA1217|p.Q1199Kfs*12|1|0.25|ENSG00000120549|chr10:24542749-24542749|C/-|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;KIAA1217|p.N1661Tfs*23|1|0.07|ENSG00000120549|chr10:24544247-24544247|A/-|frameshift_variant;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-4|KIAA1217	nc|ENSG00000120549|Q5T5P2-4|KIAA1217	MULTI-MSMS	HCT116MG_D190212_S1	1	561.2833862304688	2	561.28292	1120.55129	0.4708	0.00026425	-0.10277	-5.7684E-05	0.36803	0.00020657	561.2829138309236	14.936	0.2082	14.936	14.806	15.014	0					5	3	2	0	0	0	0.72004	1	4931	4931		14.405	3.5815	1	2249900			14399	2702	8655	8704	13836	13836					-0.004166503960504997
HVCCEWWC	8	Unmodified	_HVCCEWWC_					0	0	0			REV__ENST00000509294.1_1_5:470082-471349:+|nuORF	REV__ENST00000509294.1_1_5:470082-471349:+|nuORF	MSMS	HCT116MG_D190212_S4	4	533.1910400390625	2	533.190608	1064.36666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.060111	1	-0.20445	-0.70445	0.29555	-0.26456								0	0	0	0.8837	1	24	24		0.79363	0.26887	1		+		14400	16165	8656	8705	13837	13837					-0.1629457634346636
HVDDQGRQYY	10	Unmodified	_HVDDQGRQYY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MSMS	HCT116MG_D190212_S2	2	640.7869873046875	2	640.786358	1279.55816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.496	1	23.113	22.613	23.613	-0.38341								0	0	0	0.85631	1	8377	8377		21.537	9.8967	1				14401	4764	8657	8706	13838	13838					-0.07043337515460735
HVDHGKTSL	9	Unmodified	_HVDHGKTSL_					0	0	0		tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	tr|U7T0U8|U7T0U8_FUSNUTranslationinitiationfactorIF-2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=infBPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	497.25897216796875	2	497.259248	992.503943	0.23151	0.00011512	-0.24246	-0.00012057	-0.01095	-5.4448E-06	497.25916569419707	12.138	0.16751	11.849	11.717	11.884	-0.28953					7	4	2	0	0	0	0.26505	1	3957	3957		6.7232	0	1	317690			14402	18550	8658	8707	13839	13839					0.007391151236220139
HVDHGKTTL	9	Unmodified	_HVDHGKTTL_					0	0	0		ENSG00000178952|ENST00000313511|TUFM;TUFM|p.I66V|1|0.21|ENSG00000178952|chr16:28845963-28845963|T/C|missense_variant;tr|U7T4U6|U7T4U6_FUSNUElongationfactorTuOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tufPE=3SV=1;tr|U7SVA9|U7SVA9_FUSNULargeribosomalsubunitassemblyfactorBipAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bipAPE=3SV=1;ENSG00000140598|ENST00000268206|EFL1;ENSG00000085760|ENST00000263629|MTIF2;MTIF2|p.G590Efs*2|2|0.27|ENSG00000085760|chr2:55240114-55240114|T/-|frameshift_variant	ENSG00000178952|ENST00000313511|TUFM;ENSG00000085760|ENST00000263629|MTIF2	ENSG00000178952|ENST00000313511|TUFM	MULTI-MSMS	HCT116MG_D190212_S2	2	504.2672119140625	2	504.267073	1006.51959	0.46999	0.000237	-0.048502	-2.4458E-05	0.42148	0.00021254	504.26688160637485	17.614	0.20877	17.258	17.127	17.336	-0.35647					6	3	2	0	0	0	0.50572	1	6033	6033		16.566	1.9842	1	7257000			14403	5523;1460	8659	8708	13840	13840					0.016594016406543233
HVDHGKTTL	9	Unmodified	_HVDHGKTTL_					0	0	0		ENSG00000178952|ENST00000313511|TUFM;TUFM|p.I66V|1|0.21|ENSG00000178952|chr16:28845963-28845963|T/C|missense_variant;tr|U7T4U6|U7T4U6_FUSNUElongationfactorTuOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tufPE=3SV=1;tr|U7SVA9|U7SVA9_FUSNULargeribosomalsubunitassemblyfactorBipAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bipAPE=3SV=1;ENSG00000140598|ENST00000268206|EFL1;ENSG00000085760|ENST00000263629|MTIF2;MTIF2|p.G590Efs*2|2|0.27|ENSG00000085760|chr2:55240114-55240114|T/-|frameshift_variant	ENSG00000178952|ENST00000313511|TUFM;ENSG00000085760|ENST00000263629|MTIF2	ENSG00000178952|ENST00000313511|TUFM	MULTI-MATCH	HCT116MG_D190212_S1	1		2	504.267073	1006.51959	0.46027	0.0002321	-0.089961	-4.5365E-05	0.37031	0.00018673	504.26696298843314	16.916	0.20868	16.916	16.785	16.994	0	-0.17115	-1.4315E-05	NaN	16.566	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1667400			14404	5523;1460	8659	8708							0.016594016406543233
HVDHGKTTL	9	Unmodified	_HVDHGKTTL_					0	0	0		ENSG00000178952|ENST00000313511|TUFM;TUFM|p.I66V|1|0.21|ENSG00000178952|chr16:28845963-28845963|T/C|missense_variant;tr|U7T4U6|U7T4U6_FUSNUElongationfactorTuOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tufPE=3SV=1;tr|U7SVA9|U7SVA9_FUSNULargeribosomalsubunitassemblyfactorBipAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=bipAPE=3SV=1;ENSG00000140598|ENST00000268206|EFL1;ENSG00000085760|ENST00000263629|MTIF2;MTIF2|p.G590Efs*2|2|0.27|ENSG00000085760|chr2:55240114-55240114|T/-|frameshift_variant	ENSG00000178952|ENST00000313511|TUFM;ENSG00000085760|ENST00000263629|MTIF2	ENSG00000178952|ENST00000313511|TUFM	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	504.267073	1006.51959	0.46999	0.000237	-0.048502	-2.4458E-05	0.42148	0.00021254	504.26688160637485	17.614	0.20877	17.258	17.127	17.336	-0.35647	0.17115	2.7497E-05	NaN	16.566	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7257000			14405	5523;1460	8659	8708							0.016594016406543233
HVDKAEGTTY	10	Unmodified	_HVDKAEGTTY_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	HCT116MG_D190212_S1	1	560.7667236328125	2	560.767103	1119.51965	0.59828	0.0003355	-0.2544	-0.00014266	0.34388	0.00019284	560.7668476209775	17.646	0.26045	17.646	17.516	17.776	0					10	4	3	0	0	0	0.011898	1	6026	6026		139.38	102.87	1	17367000			14406	1147	8660	8709	13841	13841					-0.03532643149992509
HVDKAEGTTY	10	Unmodified	_HVDKAEGTTY_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	HCT116MG_D190212_S2	2	560.7672119140625	2	560.767103	1119.51965	0.18264	0.00010242	0.51384	0.00028814	0.69648	0.00039056	560.7672650022105	18.241	0.31359	17.884	17.754	18.067	-0.35647					12	5	3	0	0	0	0.060266	1	6273	6273		81.915	43.74	1	44921000			14407	1147	8660	8709	13842	13842					-0.03532643149992509
HVDKEDGQP	9	Unmodified	_HVDKEDGQP_					0	0	0			REV__ENST00000358823.6_1_1:200708894-200709023:+|nuORF	REV__ENST00000358823.6_1_1:200708894-200709023:+|nuORF	MSMS	HCT116MG_D190212_S4	4	512.7378540039062	2	512.738345	1023.46214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.452	1	17.282	16.782	17.782	-0.17047								0	0	0	0.35515	1	5790	5790		36.127	1.7253	1		+		14408	15065	8661	8710	13843	13843					-0.048654853555717636
HVDLDSGLRY	10	Unmodified	_HVDLDSGLRY_					0	0	0		nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	MULTI-MSMS	HCT116MG_D190212_S2	2	587.7958984375	2	587.796195	1173.57784	0.65688	0.00038611	-0.71811	-0.0004221	-0.061231	-3.5992E-05	587.7958013210756	36.536	0.25853	36.421	36.343	36.602	-0.11478					6	4	2	0	0	0	0.33238	1	13696	13696		47.594	19.966	1	11836000			14409	3693	8662	8711	13844	13844					-0.0020096150471999863
HVDLDSGLRY	10	Unmodified	_HVDLDSGLRY_					0	0	0		nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	MULTI-MATCH	HCT116MG_D190212_S3	3		2	587.796195	1173.57784	0.4503	0.00026469	0.13228	7.7755E-05	0.58258	0.00034244	587.7961536014244	36.836	0.20778	36.535	36.353	36.561	-0.30113	0.057148	0.00030669	NaN	47.594	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4139000			14410	3693	8662	8711							-0.0020096150471999863
HVDLLINKY	9	Unmodified	_HVDLLINKY_					0	0	0		nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2	nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-3|SCP2	MULTI-MSMS	HCT116MG_D190212_S1	1	558.3175659179688	2	557.816399	1113.61824	0.17277	9.6372E-05	-0.59766	-0.00033339	-0.4249	-0.00023701	558.3174801135881	40.409	0.20716	40.409	40.28	40.487	0					7	3	3	0	0	0	0.022505	1	15212	15212		114.65	76.675	1	18435000			14411	2505	8663	8712	13845	13845					0.06598004885699993
HVDRVIDFY	9	Unmodified	_HVDRVIDFY_					0	0	0		ENSG00000109576|ENST00000337664|AADAT;nc|ENSG00000109576|Q8N5Z0-2|AADAT	ENSG00000109576|ENST00000337664|AADAT	ENSG00000109576|ENST00000337664|AADAT	MSMS	HCT116MG_D190212_S2	2	581.8109741210938	2	582.29583	1162.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.417	1	42.347	41.847	42.847	-0.069984								0	0	0	0.64498	1	16055	16055		21.747	10.106	1				14412	2212	8664	8713	13846	13846					0.002322438462442733
HVEDTWHC	8	Unmodified	_HVEDTWHC_					0	0	0			REV__nc|ENSG00000112964|P10912-3|GHR	REV__nc|ENSG00000112964|P10912-3|GHR	MULTI-SECPEP	HCT116MG_D190212_S2	2	513.2848510742188	2	513.708534	1025.40251	0.11639	5.979E-05	-0.14946	-7.6779E-05	-0.033073	-1.699E-05	513.7084293411178	49.185	0.30353	49.031	48.935	49.238	-0.15405					8	5	2	0	0	0	0.31507	1	18853	18853		14.582	6.6715	1	27795000	+		14413	11472	8665	8714	13847	13847					-0.10917079570594979
HVEEAAAGRPP	11	Unmodified	_HVEEAAAGRPP_					0	0	0		ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant;ENSG00000197483|ENST00000598519|ZNF628	ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant	ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	378.529296875	3	378.528117	1132.56252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.586	1	53.586	53.086	54.086	0								0	0	0	0.94538	1	20526	20526		4.4062	0	1				14414	6151	8666	8715	13848	13848					0.001541716980682395
HVGAPGPS	8	Unmodified	_HVGAPGPS_					0	0	0		nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1;ENST00000341807.8_1_8:139601498-139734429:-|nuORF;COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant	nc|ENSG00000169436|Q8NFW1-3|COL22A1	nc|ENSG00000169436|Q8NFW1-3|COL22A1	MULTI-MSMS	HCT116MG_D190212_S1	1	722.6395263671875	1	721.362764	720.355488	0.77038	0.00055572	0.31033	0.00022386	1.0807	0.00077959	721.3628965513956	22.663	0.2604	22.663	22.481	22.741	0					8	4	3	0	0	0	0.76257	1	8026	8026		15.768	5.5848	1	12574000			14415	5074	8667	8716	13849	13849					-0.015875710594173142
HVGGPLAP	8	Unmodified	_HVGGPLAP_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MSMS	HCT116MG_D190212_S4	4	374.209716796875	2	374.211038	746.407523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.591	1	34.205	33.705	34.705	-0.38558								0	0	0	0.8837	1	12637	12637		6.3541	0	1		+		14416	10896	8668	8717	13850	13850					0.02417592354311182
HVGVKSAS	8	Unmodified	_HVGVKSAS_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MSMS	HCT116MG_D190212_S1	1	392.7184753417969	2	392.719227	783.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.998	1	56.998	56.498	57.498	0								0	0	0	0.8837	1	21924	21924		0.6015	0	1		+		14417	11840	8669	8718	13851	13851					0.023526735204200122
HVHEIKSPDVT	11	Unmodified	_HVHEIKSPDVT_					0	0	0		ZBTB41|p.D754Vfs*8|1|0.04|ENSG00000177888|chr1:197159828-197159829|-/GTTA|frameshift_variant	ZBTB41|p.D754Vfs*8|1|0.04|ENSG00000177888|chr1:197159828-197159829|-/GTTA|frameshift_variant	ZBTB41|p.D754Vfs*8|1|0.04|ENSG00000177888|chr1:197159828-197159829|-/GTTA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	631.3302001953125	2	631.330402	1260.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.189	1	40.116	39.616	40.616	-0.072838								0	0	0	0.91433	1	15149	15149		18.146	4.2403	1				14418	18705	8670	8719	13852	13852					0.026352830751193324
HVHSIQWSR	9	Unmodified	_HVHSIQWSR_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MSMS	HCT116MG_D190212_S2	2	575.2985229492188	2	575.299239	1148.58392	0.233	0.00013404	-1.2314	-0.00070843	-0.99842	-0.00057439	575.2984828986263	15.059	0.20851	14.732	14.602	14.81	-0.32684					5	3	2	0	0	0	0.53593	1	5000	5000		14.838	4.0143	1	3689700			14419	1560	8671	8720	13853	13853					0.015576015174701752
HVLEYAEE	8	Unmodified	_HVLEYAEE_					0	0	0			REV__NAA15|p.R70H|1|0.32|ENSG00000164134|chr4:139336917-139336917|G/A|missense_variant	REV__NAA15|p.R70H|1|0.32|ENSG00000164134|chr4:139336917-139336917|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	495.2305603027344	2	495.232364	988.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.905	1	22.905	22.405	23.405	0								0	0	0	0.8837	1	8132	8132		12.532	0.29089	1		+		14420	17056	8672	8721	13854	13854					-0.04451102098755655
HVLLPELLRHP	11	Unmodified	_HVLLPELLRHP_					0	0	0			REV__ENST00000483521.1_1_9:131475404-131482989:+|nuORF	REV__ENST00000483521.1_1_9:131475404-131482989:+|nuORF	MSMS	HCT116MG_D190212_S1	1	441.93353271484375	3	441.934706	1322.78229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.192	1	27.192	26.692	27.692	0								0	0	0	0.95521	1	9857	9857		1.4551	0	1		+		14421	15975	8673	8722	13855	13855					0.1338102237646126
HVLPCEVL	8	Unmodified	_HVLPCEVL_					0	0	0		ENST00000417257.5_1_15:44202123-44212005:-|nuORF	ENST00000417257.5_1_15:44202123-44212005:-|nuORF	ENST00000417257.5_1_15:44202123-44212005:-|nuORF	MSMS	HCT116MG_D190212_S2	2	455.24871826171875	2	455.246763	908.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.622	1	34.464	33.964	34.964	-0.15834								0	0	0	0.86899	1	12888	12888		17.087	5.9721	1				14422	7763	8674	8723	13856	13856					0.021073439966812657
HVLVKITTR	9	Unmodified	_HVLVKITTR_					0	0	0			REV__SCN7A|p.F120Sfs*6|1|0.47|ENSG00000136546|chr2:166473883-166473883|A/-|frameshift_variant	REV__SCN7A|p.F120Sfs*6|1|0.47|ENSG00000136546|chr2:166473883-166473883|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	356.2275085449219	3	356.229231	1065.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.843	1	37.46	36.96	37.96	-0.38283								0	0	0	0.76991	1	13863	13863		1.1933	0	1		+		14423	12137	8675	8724	13857	13857					0.13565703876520274
HVLWRPKI	8	Unmodified	_HVLWRPKI_					0	0	0		PAFAH1B3|p.L84_R93del|1|0.19|ENSG00000079462|chr19:42300176-42300205|GCCGGATGTGTTCCAGCTCCCCATTCTCCA/-|inframe_deletion	PAFAH1B3|p.L84_R93del|1|0.19|ENSG00000079462|chr19:42300176-42300205|GCCGGATGTGTTCCAGCTCCCCATTCTCCA/-|inframe_deletion	PAFAH1B3|p.L84_R93del|1|0.19|ENSG00000079462|chr19:42300176-42300205|GCCGGATGTGTTCCAGCTCCCCATTCTCCA/-|inframe_deletion	MSMS	HCT116MG_D190212_S1	1	350.2171630859375	3	350.218666	1047.63417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.956	1	35.956	35.456	36.456	0								0	0	0	0.8837	1	13392	13392		7.9102	2.1783	1				14424	9724	8676	8725	13858	13858					0.1122575591327859
HVNQEVTP	8	Unmodified	_HVNQEVTP_					0	0	0		tr|U7T5D1|U7T5D1_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00021PE=3SV=1	tr|U7T5D1|U7T5D1_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00021PE=3SV=1	tr|U7T5D1|U7T5D1_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00021PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	462.14666748046875	2	462.232699	922.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.132	1	21.164	20.664	21.664	0.031412								0	0	0	0.8837	1	7348	7348		10.183	0.83596	1				14425	18627	8677	8726	13859	13859					-0.013482626590416658
HVPGAGGGGP	10	Unmodified	_HVPGAGGGGP_					0	0	0			REV__ENST00000411694.1_1_21:45578646-45579129:-|nuORF	REV__ENST00000411694.1_1_21:45578646-45579129:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	403.2008972167969	2	403.201202	804.387851	-0.13477	-5.4341E-05	0.57415	0.0002315	0.43937	0.00017716	403.2012510448743	18.568	0.26039	18.568	18.402	18.662	0					6	4	2	0	0	0	0.54411	1	6382	6382		32.117	1.8922	1	1804300	+		14426	15445	8678	8727	13860	13860					-0.022167836564108256
HVQASPPPDV	10	Unmodified	_HVQASPPPDV_					0	0	0			REV__ENST00000425115.1_1_3:44751367-44751973:-|nuORF	REV__ENST00000425115.1_1_3:44751367-44751973:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	523.7667846679688	2	523.766906	1045.51926	0.13259	6.9447E-05	-0.075133	-3.9352E-05	0.057458	3.0095E-05	523.7665881287534	38.07	0.17876	37.687	37.633	37.812	-0.38283					6	4	2	0	0	0	0.81464	1	13963	13963		10.8	3.5103	1	2269900	+		14427	15544	8679	8728	13861	13861					-0.0016801807919364364
HVQTHTDTCS	10	Unmodified	_HVQTHTDTCS_					0	0	0			REV__ENST00000434570.6_1_22:20052429-20053083:+|nuORF	REV__ENST00000434570.6_1_22:20052429-20053083:+|nuORF	MSMS	HCT116MG_D190212_S2	2	565.0048828125	2	564.740562	1127.46657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.873	1	22.488	21.988	22.988	-0.3852								0	0	0	0.95351	1	8125	8125		3.9444	0	1		+		14428	15608	8680	8729	13862	13862					-0.092063442043127
HVRVRSPDCG	10	Unmodified	_HVRVRSPDCG_					0	0	0			REV__FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	REV__FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	375.5229797363281	3	375.85758	1124.55091	-0.064601	-2.4281E-05	0.44792	0.00016836	0.38332	0.00014408	375.85777193919284	29.607	0.15626	29.607	29.529	29.685	0					4	2	2	0	0	0	0.3029	1	10847	10847		9.544	0	1	10056000	+		14429	14052	8681	8730	13863	13863					-0.006383485969081448
HVSDLGPTPW	10	Unmodified	_HVSDLGPTPW_					0	0	0		ENST00000551731.1_1_22:51065210-51065465:-|nuORF	ENST00000551731.1_1_22:51065210-51065465:-|nuORF	ENST00000551731.1_1_22:51065210-51065465:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	555.3136596679688	2	554.774731	1107.53491	0.33447	0.00018555	3.6803	0.0020417	4.0147	0.0022273	554.7774902440907	24.371	0.20791	24.288	24.185	24.393	-0.083694					5	3	2	0	0	0	0.30812	1	8610	8610		3.9444	0	1	1371700			14430	8760	8682	8731	13864	13864					-0.014557315621232192
HVSLQGAQ	8	Unmodified	_HVSLQGAQ_					0	0	0			REV__ENST00000472067.1_1_7:142991698-142998016:+|nuORF	REV__ENST00000472067.1_1_7:142991698-142998016:+|nuORF	MSMS	HCT116MG_D190212_S1	1	420.2224426269531	2	420.222134	838.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.405	1	63.405	62.905	63.905	0								0	0	0	0.8837	1	24494	24494		0.69038	0	1		+		14431	15880	8683	8732	13865	13865					0.004037720320980043
HVTLCLTEAV	10	Unmodified	_HVTLCLTEAV_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-SECPEP	HCT116MG_D190212_S4	4	543.7882080078125	2	543.286617	1084.55868	0.50354	0.00027357	0.19575	0.00010635	0.69929	0.00037991	543.2869073209549	44.892	0.3207	44.518	44.459	44.779	-0.37326					15	10	2	0	0	0	0.31019	1	16534	16534		6.7232	1.9672	1	4991500			14432	4858	8684	8733	13866	13866					0.01978365879995181
HWESASLLR	9	Unmodified	_HWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	HCT116MG_D190212_S1	1	549.7884521484375	2	549.788173	1097.56179	0.44873	0.00024671	0.097348	5.3521E-05	0.54608	0.00030023	549.7882511156329	36.391	0.31759	36.391	36.257	36.574	0					7	5	2	0	0	0	0.22961	1	13599	13599		24.991	8.0487	1	6813300			14433	2901	8685	8734	13867	13867					0.016913770490191382
HWESASLLR	9	Unmodified	_HWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	HCT116MG_D190212_S3	3	550.2973022460938	2	549.788173	1097.56179	0.2817	0.00015488	-0.41903	-0.00023038	-0.13733	-7.5503E-05	549.7881688334797	36.628	0.15637	36.327	36.197	36.353	-0.30113					4	2	2	0	0	0	0.1935	1	13507	13507		41.956	13.469	1	4843700			14434	2901	8685	8734	13868	13868					0.016913770490191382
HWESASLLR	9	Unmodified	_HWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	HCT116MG_D190212_S4	4	549.7877197265625	2	549.788173	1097.56179	0.60653	0.00033346	-0.75475	-0.00041495	-0.14822	-8.1489E-05	549.7876941543539	36.708	0.20522	36.323	36.23	36.435	-0.38486					5	3	2	0	0	0	0.10244	1	13459	13459		57.722	29.235	1	3028400			14435	2901	8685	8734	13869	13869					0.016913770490191382
HWFLKLLQA	9	Unmodified	_HWFLKLLQA_					0	0	0		nc|ENSG00000170579|O14490-3|DLGAP1;nc|ENSG00000170579|O14490-5|DLGAP1;nc|ENSG00000170579|O14490-2|DLGAP1;nc|ENSG00000170579|O14490-4|DLGAP1;nc|ENSG00000170579|O14490-6|DLGAP1;nc|ENSG00000170579|O14490-7|DLGAP1;ENSG00000170579|ENST00000315677|DLGAP1	nc|ENSG00000170579|O14490-3|DLGAP1	nc|ENSG00000170579|O14490-3|DLGAP1	MSMS	HCT116MG_D190212_S1	1	578.33837890625	2	578.337301	1154.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.18	1	32.18	31.68	32.68	0								0	0	0	0.76669	1	11866	11866		12.532	2.4576	1				14436	5141	8686	8735	13870	13870					0.08890605364899784
HWFLKLLQA	9	Unmodified	_HWFLKLLQA_					0	0	0		nc|ENSG00000170579|O14490-3|DLGAP1;nc|ENSG00000170579|O14490-5|DLGAP1;nc|ENSG00000170579|O14490-2|DLGAP1;nc|ENSG00000170579|O14490-4|DLGAP1;nc|ENSG00000170579|O14490-6|DLGAP1;nc|ENSG00000170579|O14490-7|DLGAP1;ENSG00000170579|ENST00000315677|DLGAP1	nc|ENSG00000170579|O14490-3|DLGAP1	nc|ENSG00000170579|O14490-3|DLGAP1	MSMS	HCT116MG_D190212_S3	3	578.3383178710938	2	578.337301	1154.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.569	1	32.289	31.789	32.789	-0.27971								0	0	0	0.76669	1	11941	11941		12.532	3.1484	1				14437	5141	8686	8735	13871	13871					0.08890605364899784
HWGGCSDN	8	Unmodified	_HWGGCSDN_					0	0	0		ENSG00000125084|ENST00000293549|WNT1	ENSG00000125084|ENST00000293549|WNT1	ENSG00000125084|ENST00000293549|WNT1	MSMS	HCT116MG_D190212_S1	1	438.1591796875	2	438.158677	874.3028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.808	1	33.808	33.308	34.308	0								0	0	0	0.8837	1	12524	12524		0.79363	0	1				14438	2871	8687	8736	13872	13872					-0.13937897184553094
HWKGVKFN	8	Unmodified	_HWKGVKFN_					0	0	0			REV__ENST00000497493.1_1_21:38599661-38600668:-|nuORF	REV__ENST00000497493.1_1_21:38599661-38600668:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	508.90185546875	2	508.277244	1014.53993	0.21391	0.00010873	-0.78767	-0.00040035	-0.57376	-0.00029163	508.2765529223987	51.824	0.26157	51.515	51.332	51.594	-0.30927					7	4	2	0	0	0	0.78216	1	19511	19511		13.508	3.434	1	4233900	+		14439	16100	8688	8737	13873	13873					0.033246170911411355
HWMTKELKKAP	11	Unmodified	_HWMTKELKKAP_					0	0	0		ENST00000392975.6_1_17:61509719-61509893:-|nuORF	ENST00000392975.6_1_17:61509719-61509893:-|nuORF	ENST00000392975.6_1_17:61509719-61509893:-|nuORF	MSMS	HCT116MG_D190212_S1	1	684.8743896484375	2	684.876465	1367.73838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.401	1	38.401	37.901	38.901	0								0	0	0	0.95273	1	14376	14376		4.897	1.9018	1				14440	7621	8689	8738	13874	13874					0.06921669887810822
HWQFCHVM	8	Unmodified	_HWQFCHVM_					0	0	0			REV__ENST00000418448.1_1_13:57889915-57890026:+|nuORF	REV__ENST00000418448.1_1_13:57889915-57890026:+|nuORF	MSMS	HCT116MG_D190212_S3	3	544.2355346679688	2	544.233664	1086.45278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.171	1	13.24	12.74	13.74	0.069158								0	0	0	0.8837	1	4161	4161		0.79363	0.19213	1		+		14441	15498	8690	8739	13875	13875					-0.08699248446441743
HWQMSRRR	8	Unmodified	_HWQMSRRR_					0	0	0		ENST00000372067.7_1_6:43753147-43753534:+|nuORF	ENST00000372067.7_1_6:43753147-43753534:+|nuORF	ENST00000372067.7_1_6:43753147-43753534:+|nuORF	MSMS	HCT116MG_D190212_S4	4	386.2028503417969	3	386.201681	1155.58321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.673	1	27.351	26.851	27.851	-0.32157								0	0	0	0.8837	1	9917	9917		3.9444	0	1				14442	7451	8691	8740	13876	13876					0.011644835967672407
HWRKMLWR	8	Unmodified	_HWRKMLWR_					0	0	0		ENSG00000141371|ENST00000269127|CHCT1	ENSG00000141371|ENST00000269127|CHCT1	ENSG00000141371|ENST00000269127|CHCT1	MSMS	HCT116MG_D190212_S4	4	606.8320922851562	2	606.832195	1211.64984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.336	1	42.962	42.462	43.462	-0.37433								0	0	0	0.8837	1	15928	15928		9.3474	1.1919	1				14443	3711	8692	8741	13877	13877					0.05247719158660402
HYCENPEAH	9	Unmodified	_HYCENPEAH_					0	0	0		nc|ENSG00000163803|Q6P1J6-5|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1	nc|ENSG00000163803|Q6P1J6-5|PLB1	nc|ENSG00000163803|Q6P1J6-5|PLB1	MSMS	HCT116MG_D190212_S4	4	550.2173461914062	2	550.216723	1098.41889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.957	1	26.646	26.146	27.146	-0.3114								0	0	0	0.7689	1	9628	9628		4.756	0	1				14444	4633	8693	8742	13878	13878					-0.126379984045343
HYELFQEDEYY	11	Unmodified	_HYELFQEDEYY_					0	0	0			REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	768.3200073242188	2	768.319896	1534.62524	0.61089	0.00046936	0.012247	9.4097E-06	0.62314	0.00047877	768.3199448174341	33.827	0.25939	33.537	33.408	33.667	-0.29013					10	4	3	0	0	0	0.70991	1	12457	12457		18.146	16.817	1	6103100	+		14445	15589	8694	8743	13879	13879					-0.12068771815029322
HYETYVEKY	9	Unmodified	_HYETYVEKY_					0	0	0		DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;DNAH12|p.F1712Lfs*4|1|0.34|ENSG00000174844|chr3:57428681-57428681|A/-|frameshift_variant;nc|ENSG00000174844|Q6ZR08|DNAH12;DNAH12|p.K1023Nfs*9|3|0.34|ENSG00000174844|chr3:57457919-57457919|T/-|frameshift_variant;DNAH12|p.E1339Gfs*6|1|0.27|ENSG00000174844|chr3:57446125-57446126|-/C|frameshift_variant;nc|ENSG00000174844|Q6ZR08-4|DNAH12;DNAH12|p.L560*|1|0.37|ENSG00000174844|chr3:57472643-57472643|A/-|frameshift_variant	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	617.14111328125	2	616.285128	1230.5557	0.29075	0.00017918	-0.74359	-0.00045827	-0.45285	-0.00027908	616.2846012271133	15.789	0.3655	15.454	15.324	15.689	-0.33451					11	6	3	0	0	0	0.60612	1	5242	5242		10.824	0.75	1	4756300			14446	699	8695	8744	13880	13880					-0.050351859731335935
HYFFSFCYATN	11	Unmodified	_HYFFSFCYATN_					0	0	0			REV__ENST00000557516.1_1_14:47342591-47351346:-|nuORF	REV__ENST00000557516.1_1_14:47342591-47351346:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	699.8525390625	2	700.29243	1398.57031	0.87256	0.00061105	-0.89685	-0.00062806	-0.024296	-1.7014E-05	700.2918285684603	46.829	0.20767	46.458	46.328	46.536	-0.37134					8	3	3	0	0	0	0.71776	1	17296	17296		15.248	1.6336	1	6013000	+		14447	12278	8696	8745	13881	13881					-0.11303437096626112
HYFSSLAA	8	Unmodified	_HYFSSLAA_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MSMS	HCT116MG_D190212_S1	1	448.21771240234375	2	448.21906	894.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.583	1	58.583	58.083	59.083	0								0	0	0	0.8837	1	22572	22572		2.5775	0	1				14448	4474	8697	8746	13882	13882					-0.027867461994446785
HYHPHWHFWWD	11	Unmodified	_HYHPHWHFWWD_					0	0	0		ENST00000331803.8_1_7:48142961-48146533:+|nuORF	ENST00000331803.8_1_7:48142961-48146533:+|nuORF	ENST00000331803.8_1_7:48142961-48146533:+|nuORF	MSMS	HCT116MG_D190212_S2	2	824.3569946289062	2	824.355077	1646.6956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.625	1	24.245	23.745	24.745	-0.38003								0	0	0	0.96141	1	8832	8832		0.35063	0.16912	1				14449	7163	8698	8747	13883	13883					-0.10187964125429971
HYKWRTEKH	9	Unmodified	_HYKWRTEKH_					0	0	0			REV__ENSG00000140297|ENST00000396065|GCNT3	REV__ENSG00000140297|ENST00000396065|GCNT3	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5725	1	4.3079	3.8079	4.8079	-0.26456								0	0	0	0.77018	1	1395	1395		0.26902	0	1		+		14450	12288	8699	8748	13884	13884					0.021858460973135152
HYLRVHMRKHA	11	Unmodified	_HYLRVHMRKHA_					0	0	0		ZNF142|p.A873Lfs*14|1|0.2|ENSG00000115568|chr2:218643899-218643899|C/-|frameshift_variant;ZNF142|p.G1052Dfs*20|3|0.38|ENSG00000115568|chr2:218643361-218643361|C/-|frameshift_variant;ZNF142|p.G1126Afs*25|1|0.14|ENSG00000115568|chr2:218643139-218643139|C/-|frameshift_variant;ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142	ZNF142|p.A873Lfs*14|1|0.2|ENSG00000115568|chr2:218643899-218643899|C/-|frameshift_variant	ZNF142|p.A873Lfs*14|1|0.2|ENSG00000115568|chr2:218643899-218643899|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	724.3966064453125	2	724.396222	1446.77789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.248	1	40.946	40.446	41.446	-0.30185								0	0	0	0.95925	1	15338	15338		1.4819	0	1				14451	2473	8700	8749	13885	13885					0.07237234681906557
HYLYYWLKHHY	11	Unmodified	_HYLYYWLKHHY_					0	0	0		LRRC17|p.K424Nfs*12|1|0.42|ENSG00000128606|chr7:102944546-102944546|A/-|frameshift_variant;ENSG00000128606|ENST00000339431|LRRC17;ENST00000249377.4_1_7:102582770-102585051:+|nuORF	LRRC17|p.K424Nfs*12|1|0.42|ENSG00000128606|chr7:102944546-102944546|A/-|frameshift_variant	LRRC17|p.K424Nfs*12|1|0.42|ENSG00000128606|chr7:102944546-102944546|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	811.8982543945312	2	811.898786	1621.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.471	1	17.553	17.053	18.053	0.081358								0	0	0	0.96141	1	5872	5872		0.35063	0.043601	1				14452	3003	8701	8750	13886	13886					-0.0030018297450169484
IAAAGPRR	8	Unmodified	_IAAAGPRR_					0	0	0		ENST00000327490.7_1_17:74266846-74267047:+|nuORF	ENST00000327490.7_1_17:74266846-74267047:+|nuORF	ENST00000327490.7_1_17:74266846-74267047:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	406.2485046386719	2	406.248486	810.48242	0.31714	0.00012884	-0.077844	-3.1624E-05	0.23929	9.7212E-05	406.24836249735694	48.642	3.0778	48.326	47.775	50.853	-0.31596					116	58	4	0	0	0	0.87576	2	18299	18299;18527		0.79363	0	1	648920000			14453	7144	8702	8751	13887;13888	13887					0.06959774885547176
IAAAQQPT	8	Unmodified	_IAAAQQPT_					0	0	0			REV__nc|ENSG00000178922|Q5T013-2|HYI	REV__nc|ENSG00000178922|Q5T013-2|HYI	MSMS	HCT116MG_D190212_S1	1	400.2174072265625	2	400.21906	798.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.219	1	40.219	39.719	40.719	0								0	0	0	0.8837	1	15110	15110		0.79363	0	1		+		14454	15172	8703	8752	13889	13889					0.01629253800558672
IAAASMMKAAI	11	Unmodified	_IAAASMMKAAI_					0	0	0			REV__nc|ENSG00000165949|P40305-4|IFI27	REV__nc|ENSG00000165949|P40305-4|IFI27	MULTI-SECPEP	HCT116MG_D190212_S2	2	539.2958374023438	2	539.293388	1076.57222	0.48906	0.00026375	3.8914	0.0020986	4.3805	0.0023624	539.2954307406706	54.51	0.3054	54.321	54.15	54.456	-0.1894					9	5	3	0	0	0	0.35307	1	21031	21031		19.257	7.6167	1	14434000	+		14455	11660	8704	8753	13890	13890					0.036999003875962444
IAADEWSDQ	9	Unmodified	_IAADEWSDQ_					0	0	0			REV__CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant	REV__CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	517.7238159179688	2	517.724904	1033.43525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.701	1	31.43	30.93	31.93	-0.27028								0	0	0	0.71946	1	11591	11591		18.146	1.0335	1		+		14456	10298	8705	8754	13891	13891					-0.08012593966759596
IAAVGLFIFI	10	Unmodified	_IAAVGLFIFI_					0	0	0			REV__ENSG00000185873|ENST00000332644|TMPRSS11B	REV__ENSG00000185873|ENST00000332644|TMPRSS11B	MSMS	HCT116MG_D190212_S1	1	355.2228088378906	3	355.223194	1062.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.761	1	44.761	44.261	45.261	0								0	0	0	0.96769	1	16941	16941		0.77653	0	1		+		14457	13860	8706	8755	13892	13892					0.1189356890183717
IAAYQQHRRI	10	Unmodified	_IAAYQQHRRI_					0	0	0			REV__nc|ENSG00000144455|Q8NBK3-3|SUMF1	REV__nc|ENSG00000144455|Q8NBK3-3|SUMF1	MSMS	HCT116MG_D190212_S1	1	419.23870849609375	3	419.238789	1254.69454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.969	1	41.969	41.469	42.469	0								0	0	0	0.95241	1	15817	15817		4.1895	1.3462	1		+		14458	17155	8707	8756	13893	13893					0.07737821505702414
IADMGHLKY	9	Oxidation (M)	_IADM(Oxidation (M))GHLKY_		IADM(1)GHLKY		IADM(100)GHLKY	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S1	1	532.265625	2	532.265684	1062.51682	0.39289	0.00020912	0.094537	5.0319E-05	0.48742	0.00025944	532.2656787807123	25.857	0.41824	25.857	25.614	26.032	0					19	7	3	0	0	0	0.01405	1	9279	9279		103.35	35.273	1	28297000			14459	3198	8708	8757	13894	13894		75			-0.011941898085069624
IADMGHLKY	9	Oxidation (M)	_IADM(Oxidation (M))GHLKY_		IADM(1)GHLKY		IADM(59)GHLKY	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S2	2	355.1794738769531	3	355.179548	1062.51682	-0.0071342	-2.5339E-06	0.15679	5.5687E-05	0.14965	5.3153E-05	355.17953710148566	26.205	0.46624	25.844	25.662	26.128	-0.36164					23	8	4	0	0	0	0.094138	1	9457	9457		59.368	15.596	1	58898000			14460	3198	8708	8757	13895	13895		75			-0.011941898085069624
IADMGHLKY	9	Oxidation (M)	_IADM(Oxidation (M))GHLKY_		IADM(1)GHLKY		IADM(73)GHLKY	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S3	3	532.2662963867188	2	532.265684	1062.51682	0.5963	0.00031739	0.5163	0.00027481	1.1126	0.00059219	532.2659560769691	25.909	0.41731	25.781	25.598	26.016	-0.12795					11	7	2	0	0	0	0.053544	1	9276	9276		72.968	31.128	1	8917000			14461	3198	8708	8757	13896	13896		75			-0.011941898085069624
IADMGHLKY	9	Oxidation (M)	_IADM(Oxidation (M))GHLKY_					0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	355.179548	1062.51682	-0.019688	-6.9928E-06	-0.1063	-3.7756E-05	-0.12599	-4.4748E-05	355.17948394545635	25.901	0.41827	25.901	25.561	25.98	0	0.0070882	-2.263E-05	NaN	59.368	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27041000			14462	3198	8708	8757				75			-0.011941898085069624
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S1	1	524.2684326171875	2	524.268227	1046.5219	0.36037	0.00018893	0.093753	4.9152E-05	0.45412	0.00023808	524.2682866667495	33.843	0.62471	33.843	33.504	34.128	0					25	11	4	0	0	0	0.0053819	1	12538	12538		134.3	21.702	1	212960000			14463	3198	8708	8758	13897	13897					0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S1	1	1047.530517578125	1	1047.52918	1046.5219	0.81443	0.00085313	-0.034618	-3.6263E-05	0.77981	0.00081687	1047.52935534841	33.871	0.20905	33.871	33.763	33.972	0					8	3	3	0	0	0	0.026999	1	12567	12567		89.401	11.251	1	8290100			14464	3198	8708	8758	13898	13898					0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S2	2	524.2684326171875	2	524.268227	1046.5219	0.3423	0.00017946	-0.096631	-5.066E-05	0.24567	0.0001288	524.2681791902161	33.961	0.62285	33.786	33.657	34.279	-0.17511					31	11	5	0	0	0	0.0048275	1	12621	12621		139.14	26.545	1	1197500000			14465	3198	8708	8758	13899	13899					0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S2	2	1047.5299072265625	1	1047.52918	1046.5219	0.64994	0.00068083	0.079843	8.3637E-05	0.72978	0.00076447	1047.5292602326244	33.961	0.31089	33.786	33.657	33.967	-0.17512					13	5	3	0	0	0	0.012596	1	12642	12642		106.94	28.791	1	112820000			14466	3198	8708	8758	13900	13900					0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S3	3	524.2682495117188	2	524.268227	1046.5219	0.39208	0.00020556	-0.22312	-0.00011697	0.16896	8.8581E-05	524.2681369521779	34.197	0.41626	33.903	33.767	34.184	-0.29419					20	7	4	0	0	0	0.0094709	1	12579	12579		114.65	14.278	1	107350000			14467	3198	8708	8758	13901	13901					0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S4	4	524.2689819335938	2	524.268227	1046.5219	0.35954	0.0001885	0.020568	1.0783E-05	0.38011	0.00019928	524.2681750512386	34.343	0.31144	33.958	33.776	34.087	-0.38558					11	5	3	0	0	0	0.01405	1	12522	12522		103.35	25.204	1	20526000			14468	3198	8708	8758	13902	13902					0.000501140541246059
IADRLKLRPR	10	Unmodified	_IADRLKLRPR_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000486374.5_1_10:24873343-24884978:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	MSMS	HCT116MG_D190212_S4	4	413.2660827636719	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4481	1	6.1912	5.6912	6.6912	-0.25684								0	0	0	0.97045	1	1974	1974		0.15932	0	1				14469	2133	8709	8759	13903	13903					0.16895557953512252
IAEHPPAP	8	Unmodified	_IAEHPPAP_					0	0	0			REV__ENST00000469641.5_1_19:19756233-19756668:-|nuORF	REV__ENST00000469641.5_1_19:19756233-19756668:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	416.2214050292969	2	416.221603	830.428653	0.14511	6.0399E-05	-0.034673	-1.4432E-05	0.11044	4.5968E-05	416.22145174407154	17.228	0.26071	17.228	17.098	17.359	0					7	4	2	0	0	0	0.55314	1	5876	5876		36.466	8.2929	1	7519000	+		14470	15857	8710	8760	13904	13904					0.006655576631828808
IAEHPPAP	8	Unmodified	_IAEHPPAP_					0	0	0			REV__ENST00000469641.5_1_19:19756233-19756668:-|nuORF	REV__ENST00000469641.5_1_19:19756233-19756668:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	416.221603	830.428653	0.14511	6.0399E-05	-0.034673	-1.4432E-05	0.11044	4.5968E-05	416.22145174407154	17.228	0.26071	17.228	17.098	17.359	0	-0.11906	-9.1864E-05	NaN	36.466	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7519000	+		14471	15857	8710	8760							0.006655576631828808
IAEHPPAP	8	Unmodified	_IAEHPPAP_					0	0	0			REV__ENST00000469641.5_1_19:19756233-19756668:-|nuORF	REV__ENST00000469641.5_1_19:19756233-19756668:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	416.221603	830.428653	-0.057575	-2.3964E-05	0.093261	3.8817E-05	0.035686	1.4853E-05	416.22161530013466	17.823	0.20896	17.467	17.336	17.545	-0.35647	0.11906	1.4634E-05	NaN	36.466	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6184200	+		14472	15857	8710	8760							0.006655576631828808
IAEKETLEY	9	Unmodified	_IAEKETLEY_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;nc|ENSG00000185842|Q0VDD8|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;DNAH14|p.K396Rfs*4|1|0.25|ENSG00000185842|chr1:225023636-225023637|AA/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-2|DNAH14;DNAH14|p.K466Rfs*42|2|0.29|ENSG00000185842|chr1:225023841-225023841|A/-|frameshift_variant;DNAH14|p.V536Yfs*11|1|0.03|ENSG00000185842|chr1:225042893-225042894|-/ATAC|frameshift_variant	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	HCT116MG_D190212_S1	1	548.2821044921875	2	548.282054	1094.54956	0.44698	0.00024507	-0.091445	-5.0138E-05	0.35553	0.00019493	548.2818525107476	32.508	0.3132	32.508	32.326	32.639	0					11	5	3	0	0	0	0.011132	1	12002	12002		110.55	32.403	1	24450000			14473	5848	8711	8761	13905	13905					0.006062957953417936
IAEKETLEY	9	Unmodified	_IAEKETLEY_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant;nc|ENSG00000185842|Q0VDD8|DNAH14;ENST00000498360.5_1_1:225142255-225148920:+|nuORF;nc|ENSG00000185842|Q0VDD8-3|DNAH14;DNAH14|p.K396Rfs*4|1|0.25|ENSG00000185842|chr1:225023636-225023637|AA/-|frameshift_variant;nc|ENSG00000185842|Q0VDD8-2|DNAH14;DNAH14|p.K466Rfs*42|2|0.29|ENSG00000185842|chr1:225023841-225023841|A/-|frameshift_variant;DNAH14|p.V536Yfs*11|1|0.03|ENSG00000185842|chr1:225042893-225042894|-/ATAC|frameshift_variant	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	HCT116MG_D190212_S2	2	548.2818603515625	2	548.282054	1094.54956	0.48196	0.00026425	-0.10571	-5.796E-05	0.37624	0.00020629	548.2819498918442	32.741	0.26008	32.53	32.377	32.638	-0.21135					10	4	3	0	0	0	0.011132	1	12124	12124		110.55	42.472	1	72356000			14474	5848	8711	8761	13906	13906					0.006062957953417936
IAEQWVLTA	9	Unmodified	_IAEQWVLTA_					0	0	0		ENSG00000172382|ENST00000302641|PRSS27	ENSG00000172382|ENST00000302641|PRSS27	ENSG00000172382|ENST00000302641|PRSS27	MULTI-MSMS	HCT116MG_D190212_S2	2	1030.5576171875	1	1030.55677	1029.5495	0.47528	0.00048981	1.1374	0.0011721	1.6127	0.0016619	1030.5582824539063	56.84	0.31799	56.661	56.421	56.739	-0.17904					8	5	3	0	0	0	0.069315	1	21959	21959		65.235	3.8776	1	31780000			14475	5248	8712	8762	13907	13907					0.035903405860153725
IAGHEGPIGPV	11	Unmodified	_IAGHEGPIGPV_					0	0	0			REV__COL4A1|p.V765I|1|0.27|ENSG00000187498|chr13:110179322-110179322|C/T|missense_variant	REV__COL4A1|p.V765I|1|0.27|ENSG00000187498|chr13:110179322-110179322|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	523.7854614257812	2	523.785099	1045.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.372	1	41.07	40.57	41.57	-0.30185								0	0	0	0.30961	1	15389	15389		58.679	22.552	1		+		14476	10238	8713	8763	13908	13908					0.03468858817518594
IAGKGKAI	8	Unmodified	_IAGKGKAI_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MSMS	HCT116MG_D190212_S3	3	379.2485656738281	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.758	1	57.483	56.983	57.983	-0.27434								0	0	0	0.8837	1	21957	21957		0.79363	0	1				14477	2664	8714	8764	13909	13909					0.09779024939541614
IAGKGKAI	8	Unmodified	_IAGKGKAI_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MSMS	HCT116MG_D190212_S4	4	379.24822998046875	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.25	1	56.95	56.45	57.45	-0.3004								0	0	0	0.8837	1	21484	21484		0.79363	0	1				14478	2664	8714	8764	13910	13910					0.09779024939541614
IAICWVLL	8	Unmodified	_IAICWVLL_					0	0	0		ADORA2A|p.S132L|1|0.18|ENSG00000128271|chr22:24440645-24440645|C/T|missense_variant	ADORA2A|p.S132L|1|0.18|ENSG00000128271|chr22:24440645-24440645|C/T|missense_variant	ADORA2A|p.S132L|1|0.18|ENSG00000128271|chr22:24440645-24440645|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	465.77740478515625	2	465.777699	929.540846	0.29601	0.00013787	-0.27301	-0.00012716	0.022999	1.0713E-05	465.7774909331557	44.576	2.1251	44.491	43.498	45.623	-0.084801					60	40	2	0	0	0	0.8029	1	16661	16661		11.114	11.114	1	30977000			14479	66	8715	8765	13911	13911					0.07325695415806877
IAKAAGDW	8	Unmodified	_IAKAAGDW_					0	0	0		ENST00000472214.1_1_5:138370994-138371231:-|nuORF	ENST00000472214.1_1_5:138370994-138371231:-|nuORF	ENST00000472214.1_1_5:138370994-138371231:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	416.2215270996094	2	416.221603	830.428653	-0.057575	-2.3964E-05	0.093261	3.8817E-05	0.035686	1.4853E-05	416.22161530013466	17.823	0.20896	17.467	17.336	17.545	-0.35647					5	3	2	0	0	0	0.69862	1	6115	6115		23.148	2.2772	1	6184200			14480	8172	8716	8766	13912	13912					0.006655576631828808
IAKARLRPEDP	11	Unmodified	_IAKARLRPEDP_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S1	1	422.5817565917969	3	422.582333	1264.72517	0.031821	1.3447E-05	-0.97569	-0.00041231	-0.94387	-0.00039886	422.5817410647168	52.613	0.66889	52.613	52.073	52.742	0					26	12	3	0	0	0	0.74191	1	20030	20030		0.45452	0	1	35010000			14481	1423	8717	8767	13913	13913					0.1033955510006308
IAKDLAPQ	8	Unmodified	_IAKDLAPQ_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MSMS	HCT116MG_D190212_S2	2	428.2499694824219	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.337	1	25.975	25.475	26.475	-0.36164								0	0	0	0.8837	1	9524	9524		14.582	0	1				14482	6258	8718	8768	13914	13914					0.05310399868744753
IAKGNGIL	8	Unmodified	_IAKGNGIL_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	HCT116MG_D190212_S2	2	393.2473449707031	2	393.247621	784.480688	0.12783	5.0268E-05	-0.25536	-0.00010042	-0.12754	-5.0153E-05	393.24737492717344	43.938	0.20581	43.86	43.71	43.916	-0.078373					6	3	2	0	0	0	0.6854	1	16685	16685		24.674	1.5255	1	11591000			14483	30	8719	8769	13915	13915					0.0798272107693947
IAKPDVFKSP	10	Unmodified	_IAKPDVFKSP_					0	0	0		NACAD|p.I1557Rfs*6|1|0.03|ENSG00000136274|chr7:45080644-45080645|-/CCATC|frameshift_variant;ENSG00000136274|ENST00000490531|NACAD	NACAD|p.I1557Rfs*6|1|0.03|ENSG00000136274|chr7:45080644-45080645|-/CCATC|frameshift_variant	NACAD|p.I1557Rfs*6|1|0.03|ENSG00000136274|chr7:45080644-45080645|-/CCATC|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	550.7901611328125	2	551.318774	1100.623	0.53382	0.00029431	0.066451	3.6636E-05	0.60027	0.00033094	551.3187858715328	33.659	0.51982	33.659	33.4	33.919	0					14	9	2	0	0	0	0.30788	1	12568	12568		2.7352	0	1	3503000			14484	3409	8720	8770	13916	13916					0.07670889028463534
IAKPEDGHL	9	Unmodified	_IAKPEDGHL_					0	0	0			REV__ENST00000556218.5_1_14:102349680-102375988:+|nuORF	REV__ENST00000556218.5_1_14:102349680-102375988:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	490.28594970703125	2	490.263999	978.513445	0.11099	5.4414E-05	0.76698	0.00037602	0.87797	0.00043044	490.26433058516113	37.309	0.15468	37.206	37.078	37.232	-0.10318					4	2	2	0	0	0	0.26096	1	13960	13960		2.3027	0	1	15244000	+		14485	16462	8721	8771	13917	13917					0.023328834091330464
IALAPTGP	8	Unmodified	_IALAPTGP_					0	0	0			REV__ENST00000412872.3_1_6:68598425-68598952:-|nuORF	REV__ENST00000412872.3_1_6:68598425-68598952:-|nuORF	MSMS	HCT116MG_D190212_S4	4	370.2586669921875	2	370.221072	738.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.944	1	61.689	61.189	62.189	-0.25457								0	0	0	0.8837	1	23382	23382		0.69038	0	1		+		14486	15453	8722	8772	13918	13918					0.04791343294289163
IALHKSTPV	9	Unmodified	_IALHKSTPV_					0	0	0		ENST00000572019.1_1_17:5319973-5322970:-|nuORF	ENST00000572019.1_1_17:5319973-5322970:-|nuORF	ENST00000572019.1_1_17:5319973-5322970:-|nuORF	MSMS	HCT116MG_D190212_S4	4	483.2932434082031	2	483.292559	964.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.738	1	45.366	44.866	45.866	-0.37214								0	0	0	0.59795	1	16883	16883		24.021	2.2739	1				14487	8898	8723	8773	13919	13919					0.08686350685502475
IALSDKEGKLL	11	Unmodified	_IALSDKEGKLL_					0	0	0		SIRT1|p.G415Wfs*2|2|0.27|ENSG00000096717|chr10:67909321-67909322|-/T|frameshift_variant;nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1	SIRT1|p.G415Wfs*2|2|0.27|ENSG00000096717|chr10:67909321-67909322|-/T|frameshift_variant	SIRT1|p.G415Wfs*2|2|0.27|ENSG00000096717|chr10:67909321-67909322|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	593.8560791015625	2	593.855721	1185.69689	0.8768	0.00052069	-1.4409	-0.00085568	-0.56409	-0.00033499	593.8557125675743	42.785	0.20773	42.715	42.585	42.793	-0.069984					5	3	2	0	0	0	0.6977	1	16233	16233		22.658	0	1	24632000			14488	1621	8724	8774	13920	13920					0.11146812400124873
IALSLVPG	8	Unmodified	_IALSLVPG_					0	0	0			REV__ENSG00000196792|ENST00000357479|STRN3	REV__ENSG00000196792|ENST00000357479|STRN3	MSMS	HCT116MG_D190212_S3	3	385.2443542480469	2	385.244547	768.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.598	1	34.301	33.801	34.801	-0.29707								0	0	0	0.8837	1	12741	12741		11.114	0	1		+		14489	14047	8725	8775	13921	13921					0.0810420284542488
IALSLVPG	8	Unmodified	_IALSLVPG_					0	0	0			REV__ENSG00000196792|ENST00000357479|STRN3	REV__ENSG00000196792|ENST00000357479|STRN3	MSMS	HCT116MG_D190212_S4	4	385.24310302734375	2	385.244547	768.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.933	1	34.547	34.047	35.047	-0.38606								0	0	0	0.8837	1	12775	12775		11.114	0	1		+		14490	14047	8725	8775	13922	13922					0.0810420284542488
IAPKVFIIY	9	Unmodified	_IAPKVFIIY_					0	0	0			REV__ENSG00000161647|ENST00000398389|MPP3	REV__ENSG00000161647|ENST00000398389|MPP3	MSMS	HCT116MG_D190212_S2	2	355.0697937011719	3	355.223194	1062.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.901	1	22.516	22.016	23.016	-0.3852								0	0	0	0.76991	1	8136	8136		1.1933	0.41681	1		+		14491	12854	8726	8776	13923	13923					0.11893568901859908
IAQFLAHGP	9	Unmodified	_IAQFLAHGP_					0	0	0			REV__ENST00000287652.8_1_3:10312362-10312446:+|nuORF	REV__ENST00000287652.8_1_3:10312362-10312446:+|nuORF	MSMS	HCT116MG_D190212_S3	3	477.2616882324219	2	477.263802	952.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.033	1	22.998	22.498	23.498	-0.035082								0	0	0	0.76781	1	8112	8112		8.5933	1.304	1		+		14492	14737	8727	8777	13924	13924					0.0348950847994729
IARAKIQG	8	Unmodified	_IARAKIQG_					0	0	0		ENSG00000111752|ENST00000544916|PHC1;PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant	ENSG00000111752|ENST00000544916|PHC1	ENSG00000111752|ENST00000544916|PHC1	MULTI-MSMS	HCT116MG_D190212_S1	1	428.7720642089844	2	428.771794	855.529036	0.2266	9.7158E-05	-0.14929	-6.4009E-05	0.077311	3.3149E-05	428.7718487253864	28.275	0.26221	28.275	28.113	28.375	0					7	4	2	0	0	0	0.78216	1	10332	10332		13.508	0.97634	1	4288400			14493	2314	8728	8778	13925	13925					0.0954921471684429
IARAKIQG	8	Unmodified	_IARAKIQG_					0	0	0		ENSG00000111752|ENST00000544916|PHC1;PHC1|p.G884Vfs*21|1|0.41|ENSG00000111752|chr12:8937848-8937848|G/-|frameshift_variant	ENSG00000111752|ENST00000544916|PHC1	ENSG00000111752|ENST00000544916|PHC1	MULTI-MSMS	HCT116MG_D190212_S4	4	428.7718505859375	2	428.771794	855.529036	0.17548	7.5241E-05	-0.35867	-0.00015379	-0.18319	-7.8549E-05	428.7715741612036	28.926	0.25968	28.586	28.418	28.678	-0.34059					7	4	2	0	0	0	0.62424	1	10442	10442		30.225	1.738	1	2590800			14494	2314	8728	8778	13926	13926					0.0954921471684429
IARTILKAPG	10	Unmodified	_IARTILKAPG_					0	0	0		nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6;ENST00000487380.5_1_2:220074662-220075642:-|nuORF	nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	MSMS	HCT116MG_D190212_S4	4	520.3328857421875	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.495	1	36.109	35.609	36.609	-0.38558								0	0	0	0.96377	1	13357	13357		1.6526	1.0511	1				14495	2479	8729	8779	13927	13927					0.13718301502262875
IASDSEEEAGK	11	Unmodified	_IASDSEEEAGK_					0	0	0		nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;IWS1|p.S802Afs*7|2|0.29|ENSG00000163166|chr2:127481100-127481100|T/-|frameshift_variant;ENSG00000163166|ENST00000295321|IWS1;ENST00000497888.1_1_2:128260300-128262356:-|nuORF	nc|ENSG00000163166|Q96ST2-2|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	MSMS	HCT116MG_D190212_S1	1	568.2608032226562	2	568.259308	1134.50406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.747	1	28.747	28.247	29.247	0								0	0	0	0.93717	1	10481	10481		13.042	0	1				14496	4584	8730	8780	13928	13928					-0.05780974457707089
IASLTNEPAY	10	Unmodified	_IASLTNEPAY_					0	0	0			REV__tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1	REV__tr|U7SLU1|U7SLU1_FUSNUGlycerophosphoryldiesterphosphodiesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01892PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	539.7733154296875	2	539.774396	1077.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.97	1	15.635	15.135	16.135	-0.33451								0	0	0	0.92917	1	5343	5343		9.3831	0.035688	1		+		14497	17712	8731	8781	13929	13929					-0.001425710018565951
IASWNEDSQ	9	Unmodified	_IASWNEDSQ_					0	0	0		ATXN10|p.R145W|1|0.29|ENSG00000130638|chr22:45700323-45700323|C/T|missense_variant	ATXN10|p.R145W|1|0.29|ENSG00000130638|chr22:45700323-45700323|C/T|missense_variant	ATXN10|p.R145W|1|0.29|ENSG00000130638|chr22:45700323-45700323|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	524.859619140625	2	525.230353	1048.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.593	1	29.593	29.093	30.093	0								0	0	0	0.76669	1	10822	10822		12.532	0	1				14498	233	8732	8782	13930	13930					-0.07613191592463409
IATSSSPP	8	Unmodified	_IATSSSPP_					0	0	0			REV__nc|ENSG00000167074|Q10587-2|TEF	REV__nc|ENSG00000167074|Q10587-2|TEF	MSMS	HCT116MG_D190212_S2	2	379.8644104003906	2	380.197793	758.381034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.738	1	17.382	16.882	17.882	-0.35647								0	0	0	0.8837	1	6055	6055		10.183	0.83596	1		+		14499	13134	8733	8783	13931	13931					-0.007821413276587919
IATTIITL	8	Unmodified	_IATTIITL_					0	0	0			REV__ADCY2|p.R679W|1|0.1|ENSG00000078295|chr5:7757527-7757527|C/T|missense_variant	REV__ADCY2|p.R679W|1|0.1|ENSG00000078295|chr5:7757527-7757527|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	423.26983642578125	2	423.270761	844.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.735	1	24.735	24.235	25.235	0								0	0	0	0.8837	1	8868	8868		2.8892	0	1		+		14500	9867	8734	8784	13932	13932					0.09848741188375243
IATVTVDRDCL	11	Unmodified	_IATVTVDRDCL_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MSMS	HCT116MG_D190212_S2	2	603.3131103515625	2	603.313363	1204.61217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.683	1	41.615	41.115	42.115	-0.068199								0	0	0	0.75821	1	15758	15758		36.127	9.2434	1		+		14501	12347	8735	8785	13933	13933					0.01805118591869359
IAVHVVPDQL	10	Unmodified	_IAVHVVPDQL_					0	0	0		ENST00000498385.1_1_22:24236898-24237290:+|nuORF;ENSG00000240972|ENST00000215754|MIF;ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000498385.1_1_22:24236898-24237290:+|nuORF	ENST00000498385.1_1_22:24236898-24237290:+|nuORF	MSMS	HCT116MG_D190212_S1	1	546.1273193359375	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.044	1	44.044	43.544	44.544	0								0	0	0	0.49924	1	16657	16657		47.749	3.9763	1				14502	6541	8736	8786	13934	13934					0.07702004885709357
IAVSLGLGLFS	11	Unmodified	_IAVSLGLGLFS_					0	0	0			REV__ENSG00000173214|ENST00000671876|MFSD4B	REV__ENSG00000173214|ENST00000671876|MFSD4B	MSMS	HCT116MG_D190212_S1	1	538.8211669921875	2	538.82115	1075.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.49	1	48.49	47.99	48.99	0								0	0	0	0.35655	1	18452	18452		53.833	0.42879	1		+		14503	13425	8737	8787	13935	13935					0.0929577317122039
IAVSSYLGLL	10	Unmodified	_IAVSSYLGLL_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-3|ADCY10	REV__nc|ENSG00000143199|Q96PN6-3|ADCY10	MULTI-SECPEP	HCT116MG_D190212_S2	2	517.7682495117188	2	518.307875	1034.6012	0.52291	0.00027103	-0.45631	-0.00023651	0.066605	3.4522E-05	518.3076453019647	47.535	0.30988	47.413	47.233	47.543	-0.12175					8	5	2	0	0	0	0.23246	1	18133	18133		49.933	6.0747	1	22155000	+		14504	9866	8738	8788	13936	13936					0.08528084279919312
ICANYYCDM	9	Unmodified	_ICANYYCDM_					0	0	0		ENST00000453623.5_1_7:16666718-16666781:-|nuORF	ENST00000453623.5_1_7:16666718-16666781:-|nuORF	ENST00000453623.5_1_7:16666718-16666781:-|nuORF	MSMS	HCT116MG_D190212_S1	1	548.2029418945312	2	548.200838	1094.38712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.994	1	35.994	35.494	36.494	0								0	0	0	0.76739	1	13407	13407		10.074	6.4774	1				14505	8003	8739	8789	13937	13937					-0.15629450474330042
ICCSMGCG	8	Unmodified	_ICCSMGCG_					0	0	0		PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant	PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant	PTH2R|p.L281Ifs*27|1|0.05|ENSG00000144407|chr2:208444874-208444875|-/ATATTAGAACACT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	387.1260070800781	2	387.126088	772.237623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.812	1	29.463	28.963	29.963	-0.34921								0	0	0	0.8837	1	10782	10782		0.79363	0.10326	1				14506	9790	8740	8790	13938	13938					-0.15760674297905553
ICDSGCTP	8	Unmodified	_ICDSGCTP_					0	0	0			REV__ENST00000475124.1_1_3:53892553-53899332:+|nuORF	REV__ENST00000475124.1_1_3:53892553-53899332:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	795.3025512695312	1	795.301152	794.293875	0.47997	0.00038172	1.2478	0.00099239	1.7278	0.0013741	795.302071280108	47.8	0.36375	47.485	47.308	47.671	-0.31524					13	6	3	0	0	0	0.81821	1	17958	17958		9.3474	3.587	1	13003000	+		14507	10655	8741	8791	13939	13939					-0.11150006865238993
ICEECCCCCCE	11	Unmodified	_ICEECCCCCCE_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MSMS	HCT116MG_D190212_S1	1	414.10162353515625	3	414.102843	1239.2867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.621	1	35.621	35.121	36.121	0								0	0	0	0.96208	1	13256	13256		0	0	1		+		14508	13315	8742	8792	13940	13940					-0.32337258177813055
ICFPKRPP	8	Unmodified	_ICFPKRPP_					0	0	0		ENST00000373391.6_1_6:37897769-38029476:+|nuORF	ENST00000373391.6_1_6:37897769-38029476:+|nuORF	ENST00000373391.6_1_6:37897769-38029476:+|nuORF	MSMS	HCT116MG_D190212_S1	1	479.2715759277344	2	479.270573	956.526593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.678	1	24.678	24.178	25.178	0								0	0	0	0.8837	1	8845	8845		6.3541	1.1234	1				14509	7478	8743	8793	13941	13941					0.046590429875323025
ICHVCCDEP	9	Unmodified	_ICHVCCDEP_					0	0	0			REV__nc|ENSG00000135272|Q9P1T7-1|MDFIC	REV__nc|ENSG00000135272|Q9P1T7-1|MDFIC	MSMS	HCT116MG_D190212_S1	1	509.6936340332031	2	509.69318	1017.37181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.713	1	31.713	31.213	32.213	0								0	0	0	0.76781	1	11678	11678		8.5933	0.68312	1		+		14510	17135	8744	8794	13942	13942					-0.1361831727151639
ICLIIVWA	8	Unmodified	_ICLIIVWA_					0	0	0		nc|ENSG00000113494|P16471-8|PRLR;nc|ENSG00000113494|P16471-6|PRLR;nc|ENSG00000113494|P16471-9|PRLR;nc|ENSG00000113494|P16471-5|PRLR;nc|ENSG00000113494|P16471-4|PRLR;PRLR|p.P447Sfs*7|1|0.06|ENSG00000113494|chr5:35065619-35065620|-/A|frameshift_variant;PRLR|p.A448Gfs*6|1|0.04|ENSG00000113494|chr5:35065617-35065618|-/A|frameshift_variant;nc|ENSG00000113494|P16471-2|PRLR;ENSG00000113494|ENST00000618457|PRLR	nc|ENSG00000113494|P16471-8|PRLR	nc|ENSG00000113494|P16471-8|PRLR	MULTI-MSMS	HCT116MG_D190212_S3	3	465.77728271484375	2	465.777699	929.540846	0.45617	0.00021247	-0.41492	-0.00019326	0.041251	1.9214E-05	465.77739642033924	44.973	1.3231	44.664	44.295	45.618	-0.30927					46	28	2	0	0	0	0.86388	1	16737	16737		2.8892	0.58649	1	11440000			14511	2390	8745	8795	13943	13943					0.07325695415806877
ICPLCQAEL	9	Unmodified	_ICPLCQAEL_					0	0	0		BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN;BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant;BSN|p.K636Efs*7|1|0.19|ENSG00000164061|chr3:49650998-49650999|AA/-|frameshift_variant;BSN|p.T1327Pfs*44|1|0.07|ENSG00000164061|chr3:49653530-49653530|C/-|frameshift_variant;BSN|p.L1354Sfs*17|1|0.24|ENSG00000164061|chr3:49653612-49653612|C/-|frameshift_variant	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	495.72088623046875	2	495.243363	988.472174	0.3657	0.00018111	0.23152	0.00011466	0.59721	0.00029577	495.2435574992842	21.701	0.31147	21.482	21.374	21.685	-0.21832					7	5	2	0	0	0	0.60612	1	7514	7514		10.824	0.75	1	1046300			14512	284	8746	8796	13944	13944					-0.022523369462078335
ICQMRNSSLDP	11	Unmodified	_ICQMRNSSLDP_					0	0	0		nc|ENSG00000078725|O60477-3|BRINP1;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	MULTI-MSMS	HCT116MG_D190212_S3	3	633.1193237304688	2	632.294647	1262.57474	0.58431	0.00036946	-0.689	-0.00043565	-0.1047	-6.6199E-05	632.2941013751638	45.147	0.62576	44.838	44.576	45.202	-0.30927					15	11	2	0	0	0	0.74191	1	16812	16812		2.9952	2.9952	1	3572000			14513	1373	8747	8797	13945	13945					-0.046042959453870935
ICVTRAGN	8	Unmodified	_ICVTRAGN_					0	0	0		NMNAT1|p.L183I|1|0.15|ENSG00000173614|chr1:9982408-9982408|C/A|missense_variant;ENSG00000173614|ENST00000377205|NMNAT1	NMNAT1|p.L183I|1|0.15|ENSG00000173614|chr1:9982408-9982408|C/A|missense_variant	NMNAT1|p.L183I|1|0.15|ENSG00000173614|chr1:9982408-9982408|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	417.217529296875	2	417.218537	832.422522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.848	1	44.764	44.264	45.264	-0.084797								0	0	0	0.8837	1	17042	17042		10.824	0	1				14514	5296	8748	8798	13946	13946					-0.00039283839987547253
ICWKWRPEWIS	11	Unmodified	_ICWKWRPEWIS_					0	0	0			REV__APC|p.H307Ifs*29|1|0.68|ENSG00000134982|chr5:112815579-112815579|C/-|frameshift_variant	REV__APC|p.H307Ifs*29|1|0.68|ENSG00000134982|chr5:112815579-112815579|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	752.3829345703125	2	752.381914	1502.74928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.118	1	41.05	40.55	41.55	-0.068199								0	0	0	0.95113	1	15526	15526		5.7319	0	1		+		14515	9960	8749	8799	13947	13947					0.01801072262105663
IDCKLKKSP	9	Unmodified	_IDCKLKKSP_					0	0	0		ENST00000529637.5_1_1:22055191-22056289:-|nuORF	ENST00000529637.5_1_1:22055191-22056289:-|nuORF	ENST00000529637.5_1_1:22055191-22056289:-|nuORF	MSMS	HCT116MG_D190212_S3	3	516.301025390625	2	516.299527	1030.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.852	1	31.582	31.082	32.082	-0.27028								0	0	0	0.56943	1	11652	11652		25.399	3.6527	1				14516	8611	8750	8800	13948	13948					0.07043260122304673
IDDALGAQY	9	Unmodified	_IDDALGAQY_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S1	1	965.111328125	1	965.457453	964.450176	0.68517	0.0006615	0.24445	0.000236	0.92962	0.0008975	965.4580768762814	26.806	0.26071	26.806	26.657	26.918	0					7	4	2	0	0	0	0.071351	1	9712	9712		64.236	5.5575	1	3506100	+		14517	10860	8751	8801	13949	13949					-0.033471020987576594
IDDALGAQY	9	Unmodified	_IDDALGAQY_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S1	1	483.23260498046875	2	483.232364	964.450176	0.17556	8.4835E-05	0.44622	0.00021563	0.62178	0.00030046	483.2325977074892	26.787	0.31279	26.787	26.605	26.918	0					8	5	2	0	0	0	0.14972	1	9727	9727		48.346	3.9388	1	3836500	+		14518	10860	8751	8801	13950	13950					-0.033471020987576594
IDDALGAQY	9	Unmodified	_IDDALGAQY_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	HCT116MG_D190212_S1	1	965.111328125	1	965.457453	964.450176	0.68517	0.0006615	0.24445	0.000236	0.92962	0.0008975	965.4580768762814	26.806	0.26071	26.806	26.657	26.918	0					7	4	2	0	0	0	0.09628	1	9712	9712		64.236	16.488	1	3506100	+		14519	10860	8751	8801	13951	13951					-0.033471020987576594
IDDALGAQY	9	Unmodified	_IDDALGAQY_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S2	2	483.2325439453125	2	483.232364	964.450176	0.26682	0.00012893	0.079529	3.8431E-05	0.34635	0.00016737	483.2323248290991	27.104	0.31684	26.751	26.606	26.923	-0.35254					9	5	2	0	0	0	0.097615	1	9866	9866		58.679	6.4105	1	8425700	+		14520	10860	8751	8801	13952	13952					-0.033471020987576594
IDDALGAQY	9	Unmodified	_IDDALGAQY_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	483.232364	964.450176	0.17556	8.4835E-05	0.44622	0.00021563	0.62178	0.00030046	483.2325977074892	26.787	0.31279	26.787	26.605	26.918	0	0.017948	0.0002196	NaN	58.679	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3836500	+		14521	10860	8751	8801							-0.033471020987576594
IDDALGAQY	9	Unmodified	_IDDALGAQY_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	483.232364	964.450176	0.26682	0.00012893	0.079529	3.8431E-05	0.34635	0.00016737	483.2323248290991	27.104	0.31684	26.751	26.606	26.923	-0.35254	-0.017948	-0.0001348	NaN	58.679	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8425700	+		14522	10860	8751	8801							-0.033471020987576594
IDDCCCED	8	Unmodified	_IDDCCCED_					0	0	0			REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	REV__tr|U7T6G7|U7T6G7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00229PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	458.1288146972656	2	458.130079	914.245604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.394	1	41.394	40.894	41.894	0								0	0	0	0.8837	1	15585	15585		2.5775	2.5775	1		+		14523	17997	8752	8802	13953	13953					-0.21494868567458525
IDDKITVI	8	Unmodified	_IDDKITVI_					0	0	0		tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	tr|U7SPA8|U7SPA8_FUSNUDipeptidaseDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01683PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	916.5362548828125	1	916.534975	915.527698	0.63386	0.00058095	0.24419	0.00022381	0.87805	0.00080476	916.535121622712	45.477	0.25767	45.385	45.205	45.462	-0.092472					7	4	2	0	0	0	0.22303	1	17302	17302		69.105	3.8699	1	22237000			14524	18379	8753	8803	13954	13954					0.06655535837421667
IDDTMRTNLE	10	Unmodified	_IDDTMRTNLE_					0	0	0			REV__ENSG00000004846|ENST00000404938|ABCB5	REV__ENSG00000004846|ENST00000404938|ABCB5	MSMS	HCT116MG_D190212_S1	1	604.283447265625	2	604.284802	1206.55505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.667	1	37.667	37.167	38.167	0								0	0	0	0.83705	1	14080	14080		24.021	4.7636	1		+		14525	10468	8754	8804	13955	13955					-0.03996348684495388
IDEEDDDVP	9	Unmodified	_IDEEDDDVP_					0	0	0		nc|ENSG00000134717|Q96K17-2|BTF3L4;ENSG00000134717|ENST00000313334|BTF3L4	nc|ENSG00000134717|Q96K17-2|BTF3L4	nc|ENSG00000134717|Q96K17-2|BTF3L4	MSMS	HCT116MG_D190212_S3	3	523.7099609375	2	523.711659	1045.40876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.975	1	41.672	41.172	42.172	-0.30257								0	0	0	0.76877	1	15622	15622		5.2307	2.3415	1				14526	3299	8755	8805	13956	13956					-0.11212327648740938
IDEGDHAGPS	10	Unmodified	_IDEGDHAGPS_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MSMS	HCT116MG_D190212_S4	4	499.2146911621094	2	499.214703	996.414853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.447	1	18.266	17.766	18.766	-0.18052								0	0	0	0.87399	1	6192	6192		19.257	1.122	1		+		14527	14040	8756	8806	13957	13957					-0.08349764626552769
IDFKNEVP	8	Unmodified	_IDFKNEVP_					0	0	0			REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	481.2532958984375	2	481.2531	960.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.146	1	34.848	34.348	35.348	-0.29787								0	0	0	0.8837	1	12962	12962		13.508	0.97634	1		+		14528	17814	8757	8807	13958	13958					0.00982078660570096
IDFRKFAPR	9	Unmodified	_IDFRKFAPR_					0	0	0			REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	REV__IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	383.8887634277344	3	383.889097	1148.64546	-0.20403	-7.8324E-05	-0.097236	-3.7328E-05	-0.30126	-0.00011565	383.88902600969766	49.601	0.36153	49.601	49.389	49.75	0					10	6	2	0	0	0	0.74607	1	18942	18942		1.0715	0	1	11374000	+		14529	14055	8758	8808	13959	13959					0.07708533216737123
IDGKVNAE	8	Unmodified	_IDGKVNAE_					0	0	0			REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-MSMS	HCT116MG_D190212_S4	4	424.2232360839844	2	423.2218	844.429047	0.12047	5.0986E-05	-0.18818	-7.9642E-05	-0.067708	-2.8656E-05	423.22371466103243	34.814	1.0778	34.428	33.827	34.905	-0.38606					35	20	3	0	0	0	0.79062	1	12798	12798		12.532	0	1	4662600	+		14530	12741	8759	8809	13960	13960					0.0006093259237331949
IDGTLEDILF	10	Unmodified	_IDGTLEDILF_					0	0	0			REV__CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	REV__CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1137.562744140625	1	1135.58813	1134.58086	0.66774	0.00075828	-0.28852	-0.00032764	0.37922	0.00043064	1135.588005069237	57.67	0.20755	57.495	57.418	57.626	-0.17494					7	3	3	0	0	0	0.65652	1	22266	22266		24.021	3.5669	1	19162000	+		14531	10135	8760	8810	13961	13961					0.01894868829413099
IDHAKHTVESH	11	Unmodified	_IDHAKHTVESH_					0	0	0			REV__ENST00000492179.1_1_5:132086778-132086856:+|nuORF	REV__ENST00000492179.1_1_5:132086778-132086856:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	637.317138671875	2	637.317825	1272.6211	0.62642	0.00039923	-1.7354	-0.001106	-1.109	-0.0007068	637.316970229415	32.508	0.3651	32.508	32.326	32.691	0					14	6	4	0	0	0	0.57532	1	12000	12000		38.176	4.7307	1	25074000	+		14532	16049	8761	8811	13962	13962					-0.004307717274286915
IDHAKHTVESH	11	Unmodified	_IDHAKHTVESH_					0	0	0			REV__ENST00000492179.1_1_5:132086778-132086856:+|nuORF	REV__ENST00000492179.1_1_5:132086778-132086856:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	637.317138671875	2	637.317825	1272.6211	0.52063	0.00033181	-0.80134	-0.00051071	-0.28072	-0.0001789	637.3171069600414	32.873	0.25946	32.494	32.312	32.572	-0.37924					7	4	2	0	0	0	0.63759	1	11993	11993		31.268	2.7738	1	8725900	+		14533	16049	8761	8811	13963	13963					-0.004307717274286915
IDHAKHTVESH	11	Unmodified	_IDHAKHTVESH_					0	0	0			REV__ENST00000492179.1_1_5:132086778-132086856:+|nuORF	REV__ENST00000492179.1_1_5:132086778-132086856:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	637.3303833007812	2	637.317825	1272.6211	0.52063	0.00033181	-0.80134	-0.00051071	-0.28072	-0.0001789	637.3171069600414	32.873	0.25946	32.494	32.312	32.572	-0.37924					7	4	2	0	0	0	0.3218	1	11987	11987		38.176	11.907	1	8725900	+		14534	16049	8761	8811	13964	13964					-0.004307717274286915
IDHDLDFSPE	10	Unmodified	_IDHDLDFSPE_					0	0	0		EPX|p.C263Lfs*10|1|0.24|ENSG00000121053|chr17:58195149-58195150|-/C|frameshift_variant;ENSG00000121053|ENST00000225371|EPX	EPX|p.C263Lfs*10|1|0.24|ENSG00000121053|chr17:58195149-58195150|-/C|frameshift_variant	EPX|p.C263Lfs*10|1|0.24|ENSG00000121053|chr17:58195149-58195150|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	594.2764282226562	2	594.264393	1186.51423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.135	1	16.785	16.285	17.285	-0.34933								0	0	0	0.92607	1	5813	5813		10.074	0	1				14535	2722	8762	8812	13965	13965					-0.07156366732465358
IDHQQKKLRLI	11	Unmodified	_IDHQQKKLRLI_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MSMS	HCT116MG_D190212_S2	2	696.4281005859375	2	696.42771	1390.84087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.489	1	21.106	20.606	21.606	-0.38349								0	0	0	0.95113	1	7565	7565		5.7319	0	1				14536	1244	8763	8813	13966	13966					0.1610807895092421
IDIMSPRL	8	Unmodified	_IDIMSPRL_					0	0	0			REV__ENST00000374875.5_1_10:33468482-33468866:-|nuORF	REV__ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MSMS	HCT116MG_D190212_S1	1	472.76751708984375	2	472.76532	943.516088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.901	1	44.901	44.401	45.401	0								0	0	0	0.8837	1	16999	16999		11.64	0	1		+		14537	15206	8764	8814	13967	13967					0.042070155424539735
IDKDLNIL	8	Unmodified	_IDKDLNIL_					0	0	0		tr|U7T3F5|U7T3F5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00256PE=4SV=1	tr|U7T3F5|U7T3F5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00256PE=4SV=1	tr|U7T3F5|U7T3F5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00256PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	472.2751770019531	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.669	1	43.669	43.169	44.169	0								0	0	0	0.82692	1	16504	16504		20.454	0	1				14538	18596	8765	8815	13968	13968					0.06502938211713172
IDKEDKNTK	9	Unmodified	_IDKEDKNTK_					0	0	0			REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MSMS	HCT116MG_D190212_S1	1	364.1963195800781	3	364.196144	1089.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.482	1	36.482	35.982	36.982	0								0	0	0	0.76575	1	13601	13601		10.8	0.64894	1		+		14539	11431	8766	8816	13969	13969					0.0254021640114388
IDKESIRKY	9	Unmodified	_IDKESIRKY_					0	0	0			REV__ANXA4|p.Q219E|1|0.37|ENSG00000196975|chr2:69818625-69818625|C/G|missense_variant	REV__ANXA4|p.Q219E|1|0.37|ENSG00000196975|chr2:69818625-69818625|C/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	576.377197265625	2	576.324588	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.193	1	43.885	43.385	44.385	-0.30759								0	0	0	0.76818	1	16513	16513		7.2892	1.5574	1		+		14540	9953	8767	8817	13970	13970					0.06533086051808823
IDKFFKKIKK	10	Unmodified	_IDKFFKKIKK_					0	0	0			REV__tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	REV__tr|U7SZ69|U7SZ69_FUSNUChaperoneproteinDnaJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaJPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	432.2804260253906	3	432.279703	1293.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.663	1	59.503	59.003	60.003	-0.16012								0	0	0	0.97045	1	23075	23075		0.15932	0.064481	1		+		14541	17875	8768	8818	13971	13971					0.1821226518441108
IDKKIVIYV	9	Unmodified	_IDKKIVIYV_					0	0	0		nc|ENSG00000188394|Q9Y3P9-2|RABGAP1;nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;ENSG00000011454|ENST00000373647|RABGAP1	nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	MSMS	HCT116MG_D190212_S3	3	364.23333740234375	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.438	1	58.169	57.669	58.669	-0.26932								0	0	0	0.7694	1	22231	22231		2.9952	1.151	1				14542	9588	8769	8819	13972	13972					0.13852936584976305
IDKLKKCK	8	Unmodified	_IDKLKKCK_					0	0	0		ENST00000466229.5_1_1:196648727-196709933:+|nuORF;CFH|p.Q859Hfs*22|1|0.05|ENSG00000000971|chr1:196736986-196736987|-/TAATTGTATTT|frameshift_variant;nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MSMS	HCT116MG_D190212_S1	1	488.3059387207031	2	488.304613	974.594672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.015	1	39.015	38.515	39.515	0								0	0	0	0.8837	1	14624	14624		15.847	9.4931	1				14543	418	8770	8820	13973	13973					0.10635867847531699
IDKPADIH	8	Unmodified	_IDKPADIH_					0	0	0			REV__CP|p.K282Nfs*23|1|0.33|ENSG00000047457|chr3:149207553-149207553|T/-|frameshift_variant	REV__CP|p.K282Nfs*23|1|0.33|ENSG00000047457|chr3:149207553-149207553|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	454.7446594238281	2	454.745442	907.476331	-0.049444	-2.2485E-05	-0.82087	-0.00037329	-0.87031	-0.00039577	454.7448974567218	44.223	0.32036	44.223	44.036	44.357	0					8	5	2	0	0	0	0.83066	1	16758	16758		7.9102	0	1	15537000	+	+	14544	10253	8771	8821	13974	13974					0.01889211863363016
IDKPKVEMTP	10	Unmodified	_IDKPKVEMTP_					0	0	0			REV__ENSG00000174016|ENST00000308293|TENT5D	REV__ENSG00000174016|ENST00000308293|TENT5D	MULTI-MSMS	HCT116MG_D190212_S2	2	578.8380126953125	2	579.315374	1156.6162	0.59371	0.00034394	-0.1275	-7.3864E-05	0.4662	0.00027008	579.3152148045702	47.402	0.36184	47.28	47.026	47.388	-0.12175					9	6	2	0	0	0	0.76143	1	18007	18007		15.248	0.8431	1	12860000	+		14545	13466	8772	8822	13975	13975					0.044152080855837994
IDKSWIKIMQ	10	Unmodified	_IDKSWIKIMQ_					0	0	0		DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.S1932Lfs*8|1|0.39|ENSG00000124721|chr6:38864002-38864002|T/-|frameshift_variant;DNAH8|p.S2184Lfs*8|1|0.39|ENSG00000124721|chr6:38872741-38872741|T/-|frameshift_variant;DNAH8|p.F2607Lfs*22|2|0.32|ENSG00000124721|chr6:38886999-38886999|T/-|frameshift_variant;DNAH8|p.F2835Lfs*10|1|0.14|ENSG00000124721|chr6:38899865-38899865|T/-|frameshift_variant;DNAH8|p.V3263Sfs*23|1|0.16|ENSG00000124721|chr6:38918047-38918048|-/A|frameshift_variant;DNAH8|p.V3263Sfs*28|1|0.47|ENSG00000124721|chr6:38918048-38918048|A/-|frameshift_variant;DNAH8|p.Q3444Rfs*16|1|0.31|ENSG00000124721|chr6:38926073-38926073|C/-|frameshift_variant	DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	DNAH8|p.D4227Afs*7|1|0.04|ENSG00000124721|chr6:39008929-39008930|-/CAGTGTT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	631.0486450195312	2	631.352291	1260.69003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.154	1	41.778	41.278	42.278	-0.37565								0	0	0	0.94746	1	15482	15482		5.2969	0	1				14546	708	8773	8823	13976	13976					0.07011176247920048
IDLIKNRYL	9	Unmodified	_IDLIKNRYL_					0	0	0			REV__tr|U7T8P3|U7T8P3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00120PE=4SV=1	REV__tr|U7T8P3|U7T8P3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00120PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	574.3441162109375	2	574.345323	1146.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.696	1	36.696	36.196	37.196	0								0	0	0	0.768	1	13687	13687		7.9102	0	1		+		14547	18011	8774	8824	13977	13977					0.10862266811136578
IDLNARWAFFL	11	Unmodified	_IDLNARWAFFL_					0	0	0			REV__ENST00000553335.5_1_14:57076000-57086109:+|nuORF	REV__ENST00000553335.5_1_14:57076000-57086109:+|nuORF	MSMS	HCT116MG_D190212_S4	4	683.3729248046875	2	683.36933	1364.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.168	1	25.878	25.378	26.378	-0.29022								0	0	0	0.9465	1	9309	9309		8.1555	0.54658	1		+		14548	10752	8775	8825	13978	13978					0.0563334073117403
IDLNLQCK	8	Unmodified	_IDLNLQCK_					0	0	0			REV__ENSG00000253159|ENST00000252085|PCDHGA12	REV__ENSG00000253159|ENST00000252085|PCDHGA12	MSMS	HCT116MG_D190212_S2	2	473.75494384765625	2	473.754953	945.495352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.907	1	32.695	32.195	33.195	-0.21135								0	0	0	0.74658	1	12192	12192		26.884	6.43	1		+		14549	14385	8776	8826	13979	13979					0.02042425162778727
IDLRFWEKLPI	11	Unmodified	_IDLRFWEKLPI_					0	0	0			REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	MSMS	HCT116MG_D190212_S4	4	715.3003540039062	2	715.413737	1428.81292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.054	1	54.736	54.236	55.236	-0.31774								0	0	0	0.95636	1	20603	20603		2.9952	1.5133	1		+		14550	10998	8777	8827	13980	13980					0.11566755970852682
IDMHIDHDP	9	Unmodified	_IDMHIDHDP_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MSMS	HCT116MG_D190212_S3	3	546.7427368164062	2	546.742573	1091.47059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.245	1	34.946	34.446	35.446	-0.29922								0	0	0	0.74436	1	13002	13002		16.942	2.104	1		+		14551	11663	8778	8828	13981	13981					-0.07148254710591573
IDMIRRLKQDR	11	Unmodified	_IDMIRRLKQDR_					0	0	0			REV__CMSS1|p.M247I|1|0.24|ENSG00000184220|chr3:100176400-100176400|G/A|missense_variant	REV__CMSS1|p.M247I|1|0.24|ENSG00000184220|chr3:100176400-100176400|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	722.41650390625	2	722.414277	1442.814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.119	1	46.805	46.305	47.305	-0.31405								0	0	0	0.95636	1	17686	17686		2.9952	1.6657	1		+		14552	10209	8779	8829	13982	13982					0.11030647068082544
IDNEMIVI	8	Unmodified	_IDNEMIVI_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2;nc|ENSG00000141298|Q76I76-4|SSH2;SSH2|p.M625Cfs*32|1|0.2|ENSG00000141298|chr17:29636277-29636277|G/-|frameshift_variant;SSH2|p.F653Lfs*4|1|0.12|ENSG00000141298|chr17:29636190-29636190|A/-|frameshift_variant;SSH2|p.K799Nfs*18|1|0.32|ENSG00000141298|chr17:29632716-29632716|T/-|frameshift_variant	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MULTI-MSMS	HCT116MG_D190212_S4	4	946.4916381835938	1	946.491395	945.484119	0.73907	0.00069952	-2.6513	-0.0025094	-1.9122	-0.0018099	946.4907441670869	56.689	0.20847	56.389	56.258	56.467	-0.3004					5	3	2	0	0	0	0.69862	1	21282	21282		23.148	0	1	2116700			14553	3708	8780	8830	13983	13983					0.009196030686439371
IDNQMDRYQG	10	Unmodified	_IDNQMDRYQG_					0	0	0		nc|ENSG00000221994|Q2M218-2|ZNF630;ENSG00000221994|ENST00000276054|ZNF630	nc|ENSG00000221994|Q2M218-2|ZNF630	nc|ENSG00000221994|Q2M218-2|ZNF630	MSMS	HCT116MG_D190212_S2	2	620.2152709960938	2	620.274769	1238.53499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.85	1	18.487	17.987	18.987	-0.36325								0	0	0	0.91638	1	6503	6503		12.241	2.8575	1				14554	6476	8781	8831	13984	13984					-0.07474099624437258
IDNSGLEPQ	9	Unmodified	_IDNSGLEPQ_					0	0	0			REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	486.1939697265625	2	486.735271	971.45599	-0.051529	-2.5081E-05	3.7455	0.0018231	3.694	0.001798	486.73594392802994	23.849	0.25996	23.591	23.417	23.677	-0.25816					5	4	2	0	0	0	0.21838	1	8368	8368		10.074	0	1	724570	+		14555	11310	8782	8832	13985	13985					-0.03088003587095045
IDNYFMVCE	9	Unmodified	_IDNYFMVCE_					0	0	0			REV__THEM4|p.Y123C|1|0.21|ENSG00000159445|chr1:151889292-151889292|T/C|missense_variant	REV__THEM4|p.Y123C|1|0.21|ENSG00000159445|chr1:151889292-151889292|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	566.7455444335938	2	567.235735	1132.45692	0.56448	0.00032019	-3.4026	-0.0019301	-2.8381	-0.0016099	567.2332974818245	24.385	0.31278	24.004	23.822	24.135	-0.38003					7	5	2	0	0	0	0.25004	1	8688	8688		3.5965	0	1	6363500	+		14556	17635	8783	8833	13986	13986					-0.10401248534049046
IDPLVWGRG	9	Unmodified	_IDPLVWGRG_					0	0	0			REV__ENST00000227155.8_1_11:44641386-44641557:+|nuORF	REV__ENST00000227155.8_1_11:44641386-44641557:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	506.8236083984375	2	506.782359	1011.55016	0.4421	0.00022405	0.45815	0.00023218	0.90025	0.00045623	506.78264202154907	45.581	0.31404	45.581	45.399	45.713	0					7	5	2	0	0	0	0.25347	1	17217	17217		10.074	0	1	7241800	+		14557	14537	8784	8834	13987	13987					0.04485180025710633
IDQGLYSCWHN	11	Unmodified	_IDQGLYSCWHN_					0	0	0			REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	668.2942504882812	2	668.292962	1334.57137	0.64997	0.00043437	0.76396	0.00051055	1.4139	0.00094492	668.2934494922486	21.066	0.52033	21.1	20.714	21.235	0.034473					15	9	2	0	0	0	0.73981	1	7318	7318		7.1017	3.1573	1	2132500	+		14558	10607	8785	8835	13988	13988					-0.08253222727717002
IDQGLYSCWHN	11	Unmodified	_IDQGLYSCWHN_					0	0	0			REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	668.311767578125	2	668.292962	1334.57137	0.67961	0.00045418	0.95174	0.00063604	1.6313	0.0010902	668.2935372964797	20.873	0.77892	20.663	20.24	21.019	-0.20959					19	14	2	0	0	0	0.74191	1	7301	7301		4.897	0.95262	1	1797200	+		14559	10607	8785	8835	13989	13989					-0.08253222727717002
IDQGLYSCWHN	11	Unmodified	_IDQGLYSCWHN_					0	0	0			REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	668.292962	1334.57137	0.64997	0.00043437	0.76396	0.00051055	1.4139	0.00094492	668.2934494922486	21.066	0.52033	21.1	20.714	21.235	0.034473	0	0	NaN	7.1017	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2132500	+		14560	10607	8785	8835							-0.08253222727717002
IDQGPHENPTA	11	Unmodified	_IDQGPHENPTA_					0	0	0		ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	MSMS	HCT116MG_D190212_S4	4	589.3013305664062	2	589.775459	1177.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.968	1	21.743	21.243	22.243	-0.22526								0	0	0	0.86121	1	7615	7615		24.991	1.8425	1				14561	9066	8786	8836	13990	13990					-0.04530142264047754
IDQIISNAT	9	Unmodified	_IDQIISNAT_					0	0	0			REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	REV__tr|U7SU65|U7SU65_FUSNUHomoserinedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01320PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	487.7616271972656	2	487.761289	973.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.339	1	29.117	28.617	29.617	-0.22195								0	0	0	0.71946	1	10655	10655		18.146	1.2041	1		+		14562	17820	8787	8837	13991	13991					0.02021159826665553
IDRALGFDAV	10	Unmodified	_IDRALGFDAV_					0	0	0			REV__ENST00000411578.6_1_3:49924742-49933170:-|nuORF	REV__ENST00000411578.6_1_3:49924742-49933170:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	538.7907104492188	2	538.790381	1075.56621	0.75398	0.00040624	0.16781	9.0415E-05	0.92179	0.00049665	538.7904780518978	47.07	0.30863	46.948	46.769	47.078	-0.12175					11	5	3	0	0	0	0.50387	1	17969	17969		34.932	7.3033	1	32783000	+		14563	12974	8788	8838	13992	13992					0.03144841471953441
IDRDGFEVM	9	Unmodified	_IDRDGFEVM_					0	0	0		WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant	WDR70|p.V333Sfs*15|1|0.33|ENSG00000082068|chr5:37605137-37605137|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	361.1705017089844	3	361.170941	1080.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.408	1	62.159	61.659	62.659	-0.24919								0	0	0	0.7696	1	23565	23565		1.1933	0	1				14564	1418	8789	8839	13993	13993					-0.0460308405079104
IDRINVKVY	9	Unmodified	_IDRINVKVY_					0	0	0			REV__PIK3CA|p.N345K|1|0.44|ENSG00000121879|chr3:179203765-179203765|T/A|missense_variant	REV__PIK3CA|p.N345K|1|0.44|ENSG00000121879|chr3:179203765-179203765|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	560.327880859375	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.566	1	46.195	45.695	46.695	-0.37134								0	0	0	0.7689	1	17196	17196		4.756	0.42677	1		+		14565	17420	8790	8840	13994	13994					0.09021693777049222
IDRLILELKLP	11	Unmodified	_IDRLILELKLP_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000587957.1_1_17:42953300-42956953:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MSMS	HCT116MG_D190212_S3	3	661.924072265625	2	661.923938	1321.83332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.141	1	43.833	43.333	44.333	-0.30759								0	0	0	0.95023	1	16492	16492		6.2058	2.9245	1				14566	2188	8791	8841	13995	13995					0.18527926630667935
IDRLVNIY	8	Unmodified	_IDRLVNIY_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	HCT116MG_D190212_S2	2	503.3065490722656	2	503.290017	1004.56548	0.26116	0.00013144	0.010747	5.4088E-06	0.27191	0.00013685	503.791583790951	44.276	0.20796	44.198	44.019	44.227	-0.078373					5	3	2	0	0	0	0.29402	1	16801	16801		16.942	9.6531	1	8571000			14567	1504	8792	8842	13996	13996					0.06338046822907017
IDRQRRFFFNR	11	Unmodified	_IDRQRRFFFNR_					0	0	0			REV__ENST00000493035.5_1_2:172864861-172928621:+|nuORF	REV__ENST00000493035.5_1_2:172864861-172928621:+|nuORF	MSMS	HCT116MG_D190212_S4	4	777.9268798828125	2	777.923658	1553.83276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.276	1	41.9	41.4	42.4	-0.37565								0	0	0	0.95954	1	15532	15532		1.3295	0.13619	1		+		14568	13407	8793	8843	13997	13997					0.07799944754174248
IDRVRLRERAN	11	Unmodified	_IDRVRLRERAN_					0	0	0			REV__nc|ENSG00000071564|P15923-3|TCF3	REV__nc|ENSG00000071564|P15923-3|TCF3	MULTI-MSMS	HCT116MG_D190212_S2	2	466.6083679199219	3	466.607652	1396.80113	0.26945	0.00012573	0.94589	0.00044136	1.2153	0.00056709	466.60800974038676	52.76	0.67014	52.573	52.193	52.863	-0.18725					18	12	2	0	0	0	0.74191	1	20375	20375		1.0136	0.55906	1	14553000	+		14569	10763	8794	8844	13998	13998					0.11859952000236262
IDSACPTGAPP	11	Unmodified	_IDSACPTGAPP_					0	0	0			REV__nc|ENSG00000065534|Q15746-9|MYLK	REV__nc|ENSG00000065534|Q15746-9|MYLK	MSMS	HCT116MG_D190212_S3	3	515.0780029296875	2	514.739499	1027.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.127	1	52.824	52.324	53.324	-0.30305								0	0	0	0.86874	1	20100	20100		24.021	3.606	1		+		14570	10703	8795	8845	13999	13999					-0.04818772942121541
IDSAGPTQ	8	Unmodified	_IDSAGPTQ_					0	0	0			REV__ENST00000376943.7_1_X:47842797-47862911:-|nuORF	REV__ENST00000376943.7_1_X:47842797-47862911:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	788.3789672851562	1	788.378474	787.371197	0.87981	0.00069363	-0.04083	-3.219E-05	0.83898	0.00066144	788.378316624752	21.112	0.67495	20.729	20.494	21.169	-0.38288					16	12	3	0	0	0	0.038852	1	7419	7419		136.33	15.883	1	23067000	+		14571	15230	8796	8846	14000	14000					-0.030993293330539018
IDSELVEELP	10	Unmodified	_IDSELVEELP_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MSMS	HCT116MG_D190212_S1	1	572.2915649414062	2	572.292619	1142.57069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.889	1	30.889	30.389	31.389	0								0	0	0	0.90475	1	11346	11346		14.838	1.7958	1				14572	819	8797	8847	14001	14001					0.005102611042048011
IDSGGAVY	8	Unmodified	_IDSGGAVY_					0	0	0			REV__nc|ENSG00000082482|O95069-2|KCNK2	REV__nc|ENSG00000082482|O95069-2|KCNK2	MULTI-MSMS	HCT116MG_D190212_S2	2	781.3734130859375	1	781.37266	780.365384	0.88507	0.00069157	-0.14487	-0.0001132	0.7402	0.00057837	781.3723368574884	19.959	0.46671	19.584	19.403	19.869	-0.37503					16	8	3	0	0	0	0.32897	1	6948	6948		56.541	6.8724	1	66348000	+		14573	10888	8798	8848	14002	14002					-0.03358427844716516
IDSGLIYLS	9	Unmodified	_IDSGLIYLS_					0	0	0			REV__nc|ENSG00000147257|P51654-2|GPC3	REV__nc|ENSG00000147257|P51654-2|GPC3	MULTI-MSMS	HCT116MG_D190212_S3	3	980.5279541015625	1	980.529889	979.522613	0.87005	0.00085311	-1.5323	-0.0015025	-0.66227	-0.00064938	980.5274936485615	56.565	0.20951	56.281	56.15	56.359	-0.28367					5	3	2	0	0	0	0.19218	1	21499	21499		42.095	2.1372	1	2581300	+		14574	12508	8799	8849	14003	14003					0.032032319747941074
IDSGLIYLS	9	Unmodified	_IDSGLIYLS_					0	0	0			REV__nc|ENSG00000147257|P51654-2|GPC3	REV__nc|ENSG00000147257|P51654-2|GPC3	MULTI-MATCH	HCT116MG_D190212_S2	2		1	980.529889	979.522613	0.81202	0.00079621	0.25681	0.00025181	1.0688	0.001048	980.530286369686	56.468	0.15558	56.286	56.156	56.312	-0.18261	0.002265	7.8243E-05	NaN	42.095	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19001000	+		14575	12508	8799	8849							0.032032319747941074
IDSGLIYLS	9	Unmodified	_IDSGLIYLS_					0	0	0			REV__nc|ENSG00000147257|P51654-2|GPC3	REV__nc|ENSG00000147257|P51654-2|GPC3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	980.529889	979.522613	0.87005	0.00085311	-1.5323	-0.0015025	-0.66227	-0.00064938	980.5274936485615	56.565	0.20951	56.281	56.15	56.359	-0.28367	-0.002265	-0.0016761	NaN	42.095	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2581300	+		14576	12508	8799	8849							0.032032319747941074
IDSHRAKKNCQ	11	Unmodified	_IDSHRAKKNCQ_					0	0	0			REV__RFWD3|p.F691Lfs*9|1|0.45|ENSG00000168411|chr16:74626451-74626451|A/-|frameshift_variant	REV__RFWD3|p.F691Lfs*9|1|0.45|ENSG00000168411|chr16:74626451-74626451|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	433.71649169921875	3	433.891061	1298.65135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.746	1	29.746	29.246	30.246	0								0	0	0	0.95017	1	10884	10884		6.2344	0.042509	1		+		14577	13198	8800	8850	14004	14004					0.013972636661264914
IDSIREIKI	9	Unmodified	_IDSIREIKI_					0	0	0			REV__tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1	REV__tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	543.82958984375	2	543.829506	1085.64446	0.36156	0.00019663	-0.16323	-8.8772E-05	0.19833	0.00010786	543.829428910445	43.448	0.41202	43.375	43.2	43.612	-0.073372					14	7	3	0	0	0	0.034046	1	16498	16498		82.529	10.607	1	77723000	+		14578	17975	8801	8851	14005	14005					0.10506274057183873
IDSIREIKI	9	Unmodified	_IDSIREIKI_					0	0	0			REV__tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1	REV__tr|U7T4Y6|U7T4Y6_FUSNUL-threonylcarbamoyladenylatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00240PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	543.829506	1085.64446	0.36156	0.00019663	-0.16323	-8.8772E-05	0.19833	0.00010786	543.829428910445	43.448	0.41202	43.375	43.2	43.612	-0.073372	-0.0094303	-7.3231E-05	NaN	82.529	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77723000	+		14579	17975	8801	8851							0.10506274057183873
IDSISLMTKFY	11	Unmodified	_IDSISLMTKFY_					0	0	0			REV__tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1	REV__tr|U7T2J8|U7T2J8_FUSNUinorganicdiphosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00474PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	659.3400268554688	2	659.341589	1316.66863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.404	1	39.326	38.826	39.826	-0.077835								0	0	0	0.93717	1	14829	14829		13.042	0	1		+		14580	17924	8802	8852	14006	14006					0.02295746428558232
IDSPILIRRKK	11	Unmodified	_IDSPILIRRKK_					0	0	0			REV__NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant	REV__NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	669.935546875	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.73	1	48.414	47.914	48.914	-0.31596								0	0	0	0.95113	1	18336	18336		5.7319	4.4023	1		+		14581	11521	8803	8853	14007	14007					0.19529266956305946
IDSPILIRRKK	11	Unmodified	_IDSPILIRRKK_					0	0	0			REV__NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant	REV__NKTR|p.S692Ffs*17|1|0.1|ENSG00000114857|chr3:42637779-42637791|CAAGGAGCAGATC/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	670.2718505859375	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.89	1	50.535	50.035	51.035	-0.35483								0	0	0	0.95636	1	18923	18923		2.9952	0	1		+		14582	11521	8803	8853	14008	14008					0.19529266956305946
IDSQRVWA	8	Unmodified	_IDSQRVWA_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;ENST00000572445.1_1_17:1564459-1565038:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S2	2	487.7565612792969	2	487.756341	973.498129	0.48106	0.00023464	0.18938	9.2371E-05	0.67044	0.00032701	487.7564500288962	34.504	0.25774	34.329	34.175	34.433	-0.17512					11	4	3	0	0	0	0.61235	1	12861	12861		31.268	9.5217	1	19526000			14583	5321	8804	8854	14009	14009					0.01032016611952713
IDSQRVWAEY	10	Unmodified	_IDSQRVWAEY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;ENST00000572445.1_1_17:1564459-1565038:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S2	2	633.8097534179688	2	633.809302	1265.60405	0.64861	0.00041109	-0.1427	-9.0447E-05	0.5059	0.00032065	633.8091664345434	41.592	0.46342	41.523	41.345	41.808	-0.068199					24	8	4	0	0	0	0.0011309	1	15723	15723		177.58	135.62	1	316920000			14584	5321	8805	8855	14010	14010					-0.018126923332374645
IDSQRVWAEY	10	Unmodified	_IDSQRVWAEY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;ENST00000572445.1_1_17:1564459-1565038:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S3	3	633.809326171875	2	633.809302	1265.60405	0.41572	0.00026349	0.30053	0.00019048	0.71624	0.00045396	633.8091998965812	41.953	0.24848	41.651	41.48	41.729	-0.30257					7	4	2	0	0	0	0.039616	1	15626	15626		94.909	39.406	1	7896900			14585	5321	8805	8855	14011	14011					-0.018126923332374645
IDSYRIKY	8	Unmodified	_IDSYRIKY_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MSMS	HCT116MG_D190212_S1	1	529.2857666015625	2	529.287474	1056.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.764	1	32.764	32.264	33.264	0								0	0	0	0.8837	1	12102	12102		13.508	0.46542	1				14586	1005	8806	8856	14012	14012					0.034377429602727716
IDTSYVDGAW	10	Unmodified	_IDTSYVDGAW_					0	0	0			REV__ENST00000392235.7_1_1:159778160-159779237:+|nuORF	REV__ENST00000392235.7_1_1:159778160-159779237:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	563.28759765625	2	563.756204	1125.49785	0.091105	5.1361E-05	-0.50559	-0.00028503	-0.41448	-0.00023367	563.7560025424804	40.694	0.15095	40.694	40.591	40.742	0					4	2	2	0	0	0	0.30027	1	15278	15278		7.2892	7.2892	1	3253400	+		14587	15307	8807	8857	14013	14013					-0.05987447898564824
IDTSYVDGAW	10	Unmodified	_IDTSYVDGAW_					0	0	0			REV__ENST00000392235.7_1_1:159778160-159779237:+|nuORF	REV__ENST00000392235.7_1_1:159778160-159779237:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	563.756204	1125.49785	0.62697	0.00035346	-0.26446	-0.00014909	0.36252	0.00020437	563.7560619684273	40.666	0.20567	40.596	40.468	40.673	-0.069626	-0.048878	7.3373E-05	NaN	7.2892	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28162000	+		14588	15307	8807	8857							-0.05987447898564824
IDTVIETTVP	10	Unmodified	_IDTVIETTVP_					0	0	0			REV__tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1	REV__tr|U7SJA5|U7SJA5_FUSNUCRISPR-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02170PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	544.29736328125	2	544.297704	1086.58086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.562	1	40.261	39.761	40.761	-0.30161								0	0	0	0.92272	1	15062	15062		10.824	0.75	1		+		14589	17691	8808	8858	14014	14014					0.04102868829431827
IDYVLPDF	8	Unmodified	_IDYVLPDF_					0	0	0		ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6;ENST00000553038.5_1_12:100606046-100635559:+|nuORF	ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant	ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	491.24951171875	2	491.250026	980.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.579	1	38.579	38.079	39.079	0								0	0	0	0.8837	1	14447	14447		14.582	0	1				14590	31	8809	8859	14015	14015					-0.005524395709585406
IEAGASFCEP	10	Unmodified	_IEAGASFCEP_					0	0	0			REV__ENSG00000173011|ENST00000310074|TADA2B	REV__ENSG00000173011|ENST00000310074|TADA2B	MULTI-SECPEP	HCT116MG_D190212_S3	3	512.71826171875	2	512.226225	1022.4379	0.24246	0.00012419	0.18602	9.5285E-05	0.42848	0.00021948	512.2261740211636	43.416	0.50469	43.111	42.945	43.45	-0.30472					14	9	2	0	0	0	0.186	1	16207	16207		49.933	1.5872	1	12517000	+		14591	13411	8810	8860	14016	14016					-0.07242461833448033
IEALRGTMDP	10	Unmodified	_IEALRGTMDP_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant;IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENST00000527431.1_1_11:9406310-9430044:+|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S4	4	368.52496337890625	3	368.190225	1101.54884	0.024504	9.022E-06	-0.16189	-5.9605E-05	-0.13738	-5.0583E-05	368.19020833925094	21.203	1.0905	20.993	20.863	21.954	-0.20959					28	20	2	0	0	0	0.87829	1	7548	7548		3.8763	1.1411	1	3318400			14592	6381	8811	8861	14017	14017					0.0021317787463885907
IEARLKDP	8	Unmodified	_IEARLKDP_					0	0	0			REV__ENSG00000198515|ENST00000514170|CNGA1	REV__ENSG00000198515|ENST00000514170|CNGA1	MULTI-MSMS	HCT116MG_D190212_S4	4	472.726806640625	2	471.274367	940.53418	0.44034	0.00020752	0.78169	0.00036839	1.222	0.00057591	471.27463113890974	35.743	0.71007	35.356	35.208	35.918	-0.38605					72	33	3	0	0	0	0.69862	1	13106	13106		23.148	3.7094	1	23091000	+		14593	14128	8812	8862	14018	14018					0.0615347378881097
IEASAIVIQPP	11	Unmodified	_IEASAIVIQPP_					0	0	0		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MSMS	HCT116MG_D190212_S1	1	569.7216796875	2	569.329339	1136.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.24	1	27.24	26.74	27.74	0								0	0	0	0.94538	1	9876	9876		8.7454	3.0136	1				14594	9640	8813	8863	14019	14019					0.08126854337319855
IEASKQKWIRQ	11	Unmodified	_IEASKQKWIRQ_					0	0	0			REV__CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant	REV__CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	693.8948974609375	2	693.896243	1385.77793	0.83482	0.00057928	-1.2535	-0.00086983	-0.41872	-0.00029055	693.8950586363999	45.748	0.41927	45.748	45.503	45.922	0					14	7	3	0	0	0	0.65047	1	17344	17344		29.841	0	1	25298000	+		14595	10093	8814	8864	14020	14020					0.1004751316288548
IEASKQKWIRQ	11	Unmodified	_IEASKQKWIRQ_					0	0	0			REV__CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant	REV__CASP1|p.N205Ifs*7|1|0.4|ENSG00000137752|chr11:105030343-105030343|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	693.896243	1385.77793	0.80567	0.00055905	-1.5914	-0.0011043	-0.78575	-0.00054523	694.3963957894878	46.043	0.20338	45.671	45.553	45.757	-0.37206	-0.038458	-0.00017748	NaN	29.841	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16934000	+		14596	10093	8814	8864							0.1004751316288548
IECRIRQILRN	11	Unmodified	_IECRIRQILRN_					0	0	0			REV__ENSG00000170484|ENST00000305620|KRT74	REV__ENSG00000170484|ENST00000305620|KRT74	MSMS	HCT116MG_D190212_S4	4	707.4091186523438	2	707.408995	1412.80344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.492	1	39.112	38.612	39.612	-0.38055								0	0	0	0.95581	1	14512	14512		3.2813	0.28607	1		+	+	14597	10273	8815	8865	14021	14021					0.11354664413670434
IECVCLPPVP	10	Unmodified	_IECVCLPPVP_					0	0	0			REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	535.2750244140625	2	535.274664	1068.53477	0.49627	0.00026564	1.0126	0.00054204	1.5089	0.00080768	535.2752942851172	25.705	0.72822	25.336	25.03	25.758	-0.36914					22	13	2	0	0	0	0.69918	1	9342	9342		20.454	0	1	7240900	+		14598	15966	8816	8866	14022	14022					0.003248091219802518
IEDFAHSSF	9	Unmodified	_IEDFAHSSF_					0	0	0		ENSG00000138413|ENST00000345146|IDH1;ENST00000440581.1_1_6:7517452-7517767:-|nuORF	ENSG00000138413|ENST00000345146|IDH1	ENSG00000138413|ENST00000345146|IDH1	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7376708984375	2	526.737814	1051.46108	0.38985	0.00020535	-0.37848	-0.00019936	0.011373	5.9906E-06	526.7377103966744	41.009	0.36167	40.939	40.777	41.138	-0.069626					9	6	2	0	0	0	0.14972	1	15493	15493		48.346	14.243	1	26145000			14599	3557	8817	8867	14023	14023					-0.06259699724478196
IEDKSSLF	8	Unmodified	_IEDKSSLF_					0	0	0			REV__ENSG00000176601|ENST00000392915|MAP3K19	REV__ENSG00000176601|ENST00000392915|MAP3K19	MULTI-MSMS	HCT116MG_D190212_S3	3	470.24664306640625	2	469.745108	937.475663	0.12209	5.7352E-05	-0.56612	-0.00026593	-0.44403	-0.00020858	469.7446193925977	34.504	0.46751	34.207	34.025	34.492	-0.29707					11	8	2	0	0	0	0.29007	1	12697	12697		60.074	0	1	12422000	+		14600	13547	8818	8868	14024	14024					0.00442372423674442
IEDKSSLF	8	Unmodified	_IEDKSSLF_					0	0	0			REV__ENSG00000176601|ENST00000392915|MAP3K19	REV__ENSG00000176601|ENST00000392915|MAP3K19	MULTI-MSMS	HCT116MG_D190212_S4	4	469.74468994140625	2	469.745108	937.475663	0.013823	6.4932E-06	-0.78029	-0.00036654	-0.76646	-0.00036004	469.74471214173957	34.647	0.25231	34.262	34.087	34.34	-0.38558					6	4	2	0	0	0	0.22303	1	12653	12653		69.105	0	1	4668300	+		14601	13547	8818	8868	14025	14025					0.00442372423674442
IEDKSSLF	8	Unmodified	_IEDKSSLF_					0	0	0			REV__ENSG00000176601|ENST00000392915|MAP3K19	REV__ENSG00000176601|ENST00000392915|MAP3K19	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	469.745108	937.475663	0.12209	5.7352E-05	-0.56612	-0.00026593	-0.44403	-0.00020858	469.7446193925977	34.504	0.46751	34.207	34.025	34.492	-0.29707	-0.027534	5.5063E-05	NaN	69.105	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12422000	+		14602	13547	8818	8868							0.00442372423674442
IEDKSSLF	8	Unmodified	_IEDKSSLF_					0	0	0			REV__ENSG00000176601|ENST00000392915|MAP3K19	REV__ENSG00000176601|ENST00000392915|MAP3K19	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	469.745108	937.475663	0.013823	6.4932E-06	-0.78029	-0.00036654	-0.76646	-0.00036004	469.74471214173957	34.647	0.25231	34.262	34.087	34.34	-0.38558	0.027534	-0.00014615	NaN	69.105	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4668300	+		14603	13547	8818	8868							0.00442372423674442
IEDNTRKKKGE	11	Unmodified	_IEDNTRKKKGE_					0	0	0			REV__TRPM7|p.K604N|1|0.38|ENSG00000092439|chr15:50612788-50612788|T/G|missense_variant	REV__TRPM7|p.K604N|1|0.38|ENSG00000092439|chr15:50612788-50612788|T/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	659.3593139648438	2	659.35969	1316.70483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.05	1	53.86	53.36	54.36	-0.1894								0	0	0	0.9387	1	20800	20800		12.241	0.74595	1		+		14604	18021	8819	8869	14026	14026					0.059143396495983325
IEDTSGAF	8	Unmodified	_IEDTSGAF_					0	0	0		ENST00000496559.6_1_3:66430689-66456253:-|nuORF;LRIG1|p.H868Qfs*44|1|0.18|ENSG00000144749|chr3:66382276-66382286|TGCTCTCAATG/-|frameshift_variant;nc|ENSG00000144749|Q96JA1-2|LRIG1;ENSG00000144749|ENST00000273261|LRIG1	ENST00000496559.6_1_3:66430689-66456253:-|nuORF	ENST00000496559.6_1_3:66430689-66456253:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	839.3787231445312	1	839.37814	838.370863	0.7522	0.00063138	-0.21545	-0.00018084	0.53675	0.00045054	839.3778239092809	45.796	0.20511	45.695	45.607	45.812	-0.10139					5	3	2	0	0	0	0.32897	1	17454	17454		56.541	9.6204	1	17796000			14605	3883	8820	8870	14027	14027					-0.05478749052895182
IEDWAEMNHPF	11	Unmodified	_IEDWAEMNHPF_					0	0	0		nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A	nc|ENSG00000132635|Q9H1Q7-2|PCED1A	nc|ENSG00000132635|Q9H1Q7-2|PCED1A	MSMS	HCT116MG_D190212_S4	4	694.7980346679688	2	694.80062	1387.58669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.968	1	48.603	48.103	49.103	-0.365								0	0	0	0.95581	1	18147	18147		3.2813	0.28607	1				14606	3197	8821	8871	14028	14028					-0.09160355930566766
IEDYSDDY	8	Unmodified	_IEDYSDDY_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1;REV__PEAK1|p.Q863Kfs*186|1|0.48|ENSG00000173517|chr15:77179340-77179340|G/-|frameshift_variant	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	HCT116MG_D190212_S1	1	511.4718017578125	2	510.195645	1018.37674	0.41432	0.00021138	0.66315	0.00033834	1.0775	0.00054972	510.19635475892534	31.714	0.31285	31.714	31.544	31.857	0					11	5	3	0	0	0	0.84759	1	11661	11661		5.7604	2.8712	1	6118400	+		14607	13442;17404	8822	8872	14029	14029					-0.1317169533190281
IEEPFFSPL	9	Unmodified	_IEEPFFSPL_					0	0	0		VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant;ENSG00000075399|ENST00000389386|VPS9D1;nc|ENSG00000075399|Q9Y2B5-2|VPS9D1	VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant	VPS9D1|p.A504Gfs*67|1|0.5|ENSG00000075399|chr16:89709313-89709314|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	539.7747802734375	2	539.776408	1077.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.37	1	56.064	55.564	56.564	-0.30626								0	0	0	0.76902	1	21130	21130		4.3292	1.0479	1				14608	1315	8823	8873	14030	14030					0.0025951849186185427
IEESYVHL	8	Unmodified	_IEESYVHL_					0	0	0		ENST00000502925.1_1_4:48549577-48553572:-|nuORF;FRYL|p.K2264Qfs*11|1|0.13|ENSG00000075539|chr4:48531269-48531270|-/G|frameshift_variant;FRYL|p.P2464Efs*13|1|0.04|ENSG00000075539|chr4:48523032-48523033|-/TATACAATTC|frameshift_variant;ENSG00000075539|ENST00000358350|FRYL	ENST00000502925.1_1_4:48549577-48553572:-|nuORF	ENST00000502925.1_1_4:48549577-48553572:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	495.73736572265625	2	495.250557	988.486562	0.55514	0.00027493	0.081266	4.0247E-05	0.6364	0.00031518	495.2506492603896	44.783	0.36364	44.698	44.535	44.899	-0.084797					10	6	2	0	0	0	0.76257	1	16974	16974		15.768	15.768	1	13590000			14609	1319	8824	8874	14031	14031					-0.00814225202043417
IEFGLNSN	8	Unmodified	_IEFGLNSN_					0	0	0			REV__tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	REV__tr|U7SYI7|U7SYI7_FUSNUTypeIVsecretionsystemproteinVirB10OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00894PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	447.2572937011719	2	447.2218	892.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.101	1	45.008	44.508	45.508	-0.092472								0	0	0	0.8837	1	17143	17143		10.074	0.72649	1		+		14610	17868	8825	8875	14032	14032					-0.021470674076113028
IEFPEGPALP	10	Unmodified	_IEFPEGPALP_					0	0	0			REV__ENSG00000275572|ENST00000614228|GRIFIN	REV__ENSG00000275572|ENST00000614228|GRIFIN	MULTI-SECPEP	HCT116MG_D190212_S1	1	356.8570861816406	3	357.19033	1068.54916	-0.22025	-7.8672E-05	2.9199	0.001043	2.6997	0.0009643	357.19135639603394	19.365	0.31212	19.365	19.131	19.443	0					6	5	2	0	0	0	0.30806	1	6734	6734		6.1918	1.663	1	5397200	+		14611	14457	8826	8876	14033	14033					0.017629208661446683
IEFVTGDLLA	10	Unmodified	_IEFVTGDLLA_					0	0	0			REV__nc|ENSG00000183628|Q14129-2|DGCR6	REV__nc|ENSG00000183628|Q14129-2|DGCR6	MULTI-MSMS	HCT116MG_D190212_S3	3	539.2575073242188	2	539.294965	1076.57538	0.43476	0.00023447	-0.22677	-0.00012229	0.208	0.00011217	539.2946545748689	54.617	0.20914	54.321	54.19	54.4	-0.29587					5	3	2	0	0	0	0.86862	1	20670	20670		6.2058	0	1	8385600	+		14612	11870	8827	8877	14034	14034					0.04015190037625871
IEGAVSLVF	9	Unmodified	_IEGAVSLVF_					0	0	0			REV__nc|ENSG00000010379|Q9NSD5-3|SLC6A13	REV__nc|ENSG00000010379|Q9NSD5-3|SLC6A13	MULTI-MSMS	HCT116MG_D190212_S1	1	467.76617431640625	2	467.765843	933.517133	0.19017	8.8956E-05	0.36783	0.00017206	0.558	0.00026101	467.76600698423186	44.957	0.20663	44.957	44.88	45.087	0					6	3	2	0	0	0	0.071351	1	17071	17071		64.236	6.765	1	9206600	+		14613	10519	8828	8878	14035	14035					0.04771553183002197
IEGPMGFY	8	Unmodified	_IEGPMGFY_					0	0	0			REV__nc|ENSG00000105290|P51693|APLP1	REV__nc|ENSG00000105290|P51693|APLP1	MSMS	HCT116MG_D190212_S2	2	457.2086181640625	2	457.209847	912.40514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.14	1	32.929	32.429	33.429	-0.21135								0	0	0	0.8837	1	12286	12286		15.768	1.1865	1		+		14614	11245	8829	8879	14036	14036					-0.05456624165640278
IEGSQLTEE	9	Unmodified	_IEGSQLTEE_					0	0	0		tr|U7STD8|U7STD8_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01312PE=4SV=1	tr|U7STD8|U7STD8_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01312PE=4SV=1	tr|U7STD8|U7STD8_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01312PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	503.2384033203125	2	503.240386	1004.46622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.433	1	35.291	34.791	35.791	-0.14245								0	0	0	0.7663	1	13217	13217		13.906	0	1				14615	18435	8830	8880	14037	14037					-0.03583440652516856
IEHEIIAKY	9	Unmodified	_IEHEIIAKY_					0	0	0			REV__ENSG00000112818|ENST00000230588|MEP1A	REV__ENSG00000112818|ENST00000230588|MEP1A	MSMS	HCT116MG_D190212_S1	1	557.957275390625	2	558.308406	1114.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.055	1	50.055	49.555	50.555	0								0	0	0	0.56943	1	19089	19089		25.399	7.253	1		+		14616	11470	8831	8881	14038	14038					0.04954298648817712
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MULTI-MSMS	HCT116MG_D190212_S1	1	541.7857055664062	2	541.785099	1081.55564	0.37294	0.00020205	-0.083892	-4.5451E-05	0.28905	0.0001566	541.7849206101363	44.223	0.26852	44.223	44.088	44.357	0					10	4	3	0	0	0	0.097615	1	16745	16745		58.679	16.584	1	40696000			14617	3824	8832	8882	14039	14039					0.01812858817538654
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7855224609375	2	541.785099	1081.55564	0.23503	0.00012734	0.36665	0.00019865	0.60168	0.00032598	541.7852388333349	44.173	0.3105	44.095	43.916	44.227	-0.078373					13	5	3	0	0	0	0.042978	1	16774	16774		78.149	43.748	1	86954000			14618	3824	8832	8882	14040	14040					0.01812858817538654
IEHLKQRQR	9	Unmodified	_IEHLKQRQR_					0	0	0			REV__KMT2C|p.R2388H|1|0.34|ENSG00000055609|chr7:152180113-152180113|C/T|missense_variant	REV__KMT2C|p.R2388H|1|0.34|ENSG00000055609|chr7:152180113-152180113|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	604.3543701171875	2	604.354545	1206.69454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.71	1	41.333	40.833	41.833	-0.37637								0	0	0	0.76967	1	15305	15305		2.0598	0.21551	1		+		14619	16933	8833	8883	14041	14041					0.09945821505675667
IEHLQGLS	8	Unmodified	_IEHLQGLS_					0	0	0		nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-MSMS	HCT116MG_D190212_S1	1	448.7453918457031	2	448.745442	895.476331	0.0096217	4.3177E-06	0.034994	1.5703E-05	0.044615	2.0021E-05	448.74539762393954	18.532	0.31254	18.532	18.402	18.714	0					9	5	2	0	0	0	0.21275	1	6377	6377		71.134	0	1	11510000			14620	4876	8834	8884	14042	14042					0.024412118633904356
IEHLQGLS	8	Unmodified	_IEHLQGLS_					0	0	0		nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	448.745442	895.476331	0.13809	6.1966E-05	-0.02515	-1.1286E-05	0.11294	5.068E-05	448.74538373391795	19.231	0.20817	18.862	18.732	18.94	-0.3695	0.16489	-1.8088E-05	NaN	71.134	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11224000			14621	4876	8834	8884							0.024412118633904356
IEHPSMSVY	9	Unmodified	_IEHPSMSVY_					0	0	0		ENSG00000078804|ENST00000374810|TP53INP2;nc|ENSG00000164938|Q96A56-2|TP53INP1;TP53INP1|p.E184Mfs*13|1|0.08|ENSG00000164938|chr8:94930652-94930653|-/AT|frameshift_variant;ENSG00000164938|ENST00000342697|TP53INP1	ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	MSMS	HCT116MG_D190212_S2	2	531.2779541015625	2	531.749867	1061.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.697	1	35.555	35.055	36.055	-0.14245								0	0	0	0.53872	1	13325	13325		26.884	3.7352	1				14622	1374	8835	8885	14043	14043					-0.04310182562426235
IEHQIAVQY	9	Unmodified	_IEHQIAVQY_					0	0	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;TCF7L2|p.K341Rfs*10|1|0.49|ENSG00000148737|chr10:113151741-113151741|A/-|frameshift_variant;TCF7L2|p.L200Sfs*25|4|0.36|ENSG00000148737|chr10:113141225-113141225|C/-|frameshift_variant;TCF7L2|p.H195Lfs*15|1|0.1|ENSG00000148737|chr10:113141214-113141215|-/T|frameshift_variant	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MULTI-MSMS	HCT116MG_D190212_S2	2	550.7904663085938	2	550.790381	1099.56621	0.31874	0.00017556	0.6745	0.00037151	0.99325	0.00054707	550.7904709121925	34.016	0.25939	33.841	33.657	33.916	-0.17512					10	4	3	0	0	0	0.071914	1	12664	12664		63.961	25.785	1	32772000			14623	4033	8836	8886	14044	14044					0.020408414719668144
IEHQIAVQY	9	Unmodified	_IEHQIAVQY_					0	0	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;TCF7L2|p.K341Rfs*10|1|0.49|ENSG00000148737|chr10:113151741-113151741|A/-|frameshift_variant;TCF7L2|p.L200Sfs*25|4|0.36|ENSG00000148737|chr10:113141225-113141225|C/-|frameshift_variant;TCF7L2|p.H195Lfs*15|1|0.1|ENSG00000148737|chr10:113141214-113141215|-/T|frameshift_variant	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	550.790381	1099.56621	0.4979	0.00027424	-0.20521	-0.00011303	0.29269	0.00016121	550.7902444137818	33.826	0.2612	33.826	33.711	33.972	0	-0.0073997	-0.00072495	NaN	63.961	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5467200			14624	4033	8836	8886							0.020408414719668144
IEIRCERRREE	11	Unmodified	_IEIRCERRREE_					0	0	0			REV__RNF10|p.R616C|1|0.31|ENSG00000022840|chr12:120565490-120565490|C/T|missense_variant	REV__RNF10|p.R616C|1|0.31|ENSG00000022840|chr12:120565490-120565490|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	744.8909912109375	2	744.888623	1487.76269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.164	1	57.875	57.375	58.375	-0.28879								0	0	0	0.94755	1	21852	21852		7.609	0	1		+		14625	17473	8837	8887	14045	14045					0.03832278303389103
IEKDNAFV	8	Unmodified	_IEKDNAFV_					0	0	0			REV__PCDH17|p.S283Qfs*6|1|0.18|ENSG00000118946|chr13:57633388-57633389|-/T|frameshift_variant	REV__PCDH17|p.S283Qfs*6|1|0.18|ENSG00000118946|chr13:57633388-57633389|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	468.24395751953125	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.248	1	29.89	29.39	30.39	-0.3571								0	0	0	0.8837	1	10957	10957		8.5933	0.68312	1		+		14626	11649	8838	8888	14046	14046					0.006137921435197313
IEKEIKDVF	9	Unmodified	_IEKEIKDVF_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	HCT116MG_D190212_S1	1	560.8165283203125	2	560.816064	1119.61758	-0.38603	-0.00021649	0.5923	0.00033217	0.20628	0.00011568	560.816301010696	38.128	0.208	38.128	38.019	38.227	0					6	3	2	0	0	0	0.035298	1	14282	14282		81.915	20.313	1	7057500			14627	1205	8839	8889	14047	14047					0.06255165445986677
IEKEIKDVF	9	Unmodified	_IEKEIKDVF_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	HCT116MG_D190212_S2	2	374.2131652832031	3	374.213135	1119.61758	-0.37729	-0.00014119	0.2655	9.9355E-05	-0.11178	-4.1831E-05	374.2132386922381	38.142	0.15519	38.049	37.96	38.115	-0.09301					4	2	2	0	0	0	0.10244	1	14341	14341		46.022	3.7098	1	19801000			14628	1205	8839	8889	14048	14048					0.06255165445986677
IEKEIKDVF	9	Unmodified	_IEKEIKDVF_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	HCT116MG_D190212_S2	2	560.8159790039062	2	560.816064	1119.61758	0.22582	0.00012664	0.015551	8.7212E-06	0.24137	0.00013536	560.8159162190728	38.13	0.25842	38.037	37.908	38.167	-0.09301					12	4	3	0	0	0	0.0064513	1	14343	14343		124.95	42.424	1	33318000			14629	1205	8839	8889	14049	14049					0.06255165445986677
IEKELSKLEK	10	Unmodified	_IEKELSKLEK_					0	0	0			REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-SECPEP	HCT116MG_D190212_S2	2	608.385498046875	2	608.861003	1215.70745	0.84985	0.00051744	-0.51451	-0.00031327	0.33534	0.00020417	608.8607649239982	42.577	0.26012	42.507	42.377	42.637	-0.069984					6	4	2	0	0	0	0.30961	1	16163	16163		5.2969	0	1	18094000	+		14630	10196	8840	8890	14050	14050					0.1082279505455972
IEKEVGQA	8	Unmodified	_IEKEVGQA_					0	0	0		ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	MSMS	HCT116MG_D190212_S4	4	437.23797607421875	2	437.23745	872.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.827	1	42.452	41.952	42.952	-0.37493								0	0	0	0.8837	1	15755	15755		4.756	1.8668	1				14631	1029	8841	8891	14051	14051					0.01901505626483413
IEKEVISKY	9	Unmodified	_IEKEVISKY_					0	0	0		tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	554.8164672851562	2	554.816064	1107.61758	0.72888	0.0004044	-0.32679	-0.00018131	0.40209	0.00022309	554.816077054489	28.402	0.21327	28.402	28.268	28.482	0					6	3	2	0	0	0	0.32403	1	10372	10372		28.234	0	1	11092000			14632	18395	8842	8892	14052	14052					0.06807165446002728
IEKEVISKY	9	Unmodified	_IEKEVISKY_					0	0	0		tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	554.816064	1107.61758	0.27836	0.00015444	0.16153	8.9622E-05	0.43989	0.00024406	554.8158715557821	28.846	0.20327	28.53	28.352	28.555	-0.31613	0.035175	0.00047345	NaN	28.234	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28646000			14633	18395	8842	8892							0.06807165446002728
IEKEVISKY	9	Unmodified	_IEKEVISKY_					0	0	0		tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	tr|U7SQU4|U7SQU4_FUSNUFlagellarproteinFliTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01800PE=4SV=1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	554.816064	1107.61758	0.61454	0.00034096	-1.0004	-0.00055503	-0.38584	-0.00021407	554.81546955036	28.773	0.20809	28.551	28.421	28.629	-0.22195	0.056765	-0.00081585	NaN	28.234	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3040900			14634	18395	8842	8892							0.06807165446002728
IEKFVTIKKK	10	Unmodified	_IEKFVTIKKK_					0	0	0			REV__ENSG00000118777|ENST00000237612|ABCG2	REV__ENSG00000118777|ENST00000237612|ABCG2	MSMS	HCT116MG_D190212_S1	1	617.3984985351562	2	617.400099	1232.78564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.592	1	61.592	61.092	62.092	0								0	0	0	0.94925	1	23768	23768		4.897	1.9018	1		+		14635	11642	8843	8893	14053	14053					0.17856272430481113
IEKIKITKKLY	11	Unmodified	_IEKIKITKKLY_					0	0	0			REV__tr|U7T3K5|U7T3K5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00441PE=4SV=1	REV__tr|U7T3K5|U7T3K5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00441PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	688.837158203125	2	688.947413	1375.88027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.405	1	42.102	41.602	42.602	-0.30352								0	0	0	0.95954	1	15796	15796		1.3295	0	1		+		14636	17952	8844	8894	14054	14054					0.20736786181805655
IEKKLKFL	8	Unmodified	_IEKKLKFL_					0	0	0			REV__ENST00000258381.10_2_2:231042958-231050735:-|nuORF	REV__ENST00000258381.10_2_2:231042958-231050735:-|nuORF	MSMS	HCT116MG_D190212_S1	1	509.83673095703125	2	509.836603	1017.65865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.656	1	21.656	21.156	22.156	0								0	0	0	0.8837	1	7629	7629		5.7604	0	1		+		14637	14615	8845	8895	14055	14055					0.150529712761454
IEKKLKKIY	9	Unmodified	_IEKKLKKIY_					0	0	0			REV__tr|U7SSJ1|U7SSJ1_FUSNUPutativepre-16SrRNAnucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01286PE=3SV=1	REV__tr|U7SSJ1|U7SSJ1_FUSNUPutativepre-16SrRNAnucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01286PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	581.8795776367188	2	581.881542	1161.74853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.516	1	53.213	52.713	53.713	-0.30305								0	0	0	0.7696	1	20257	20257		2.3027	0.4585	1		+		14638	17769	8846	8896	14056	14056					0.1741260088472245
IEKKRLPPE	9	Unmodified	_IEKKRLPPE_					0	0	0			REV__nc|ENSG00000186439|Q13061-3|TRDN	REV__nc|ENSG00000186439|Q13061-3|TRDN	MSMS	HCT116MG_D190212_S4	4	555.4010009765625	2	555.337498	1108.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.966	1	49.607	49.107	50.107	-0.35913								0	0	0	0.76913	1	18549	18549		3.9444	0.3479	1		+		14639	13883	8847	8897	14057	14057					0.11045980294102264
IEKKRLPPE	9	Unmodified	_IEKKRLPPE_					0	0	0			REV__nc|ENSG00000186439|Q13061-3|TRDN	REV__nc|ENSG00000186439|Q13061-3|TRDN	MSMS	HCT116MG_D190212_S4	4	555.3351440429688	2	555.337498	1108.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.164	1	49.805	49.305	50.305	-0.35878								0	0	0	0.76913	1	18629	18629		3.9444	0.3479	1		+		14640	13883	8847	8897	14058	14058					0.11045980294102264
IEKLKGIHIM	10	Unmodified	_IEKLKGIHIM_					0	0	0		nc|ENSG00000119661|Q4LDG9-3|DNAL1;ENSG00000119661|ENST00000553645|DNAL1	nc|ENSG00000119661|Q4LDG9-3|DNAL1	nc|ENSG00000119661|Q4LDG9-3|DNAL1	MSMS	HCT116MG_D190212_S3	3	591.84814453125	2	591.357376	1180.7002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.016	1	39.714	39.214	40.214	-0.30137								0	0	0	0.92272	1	14842	14842		10.824	5.9269	1				14641	2655	8848	8898	14059	14059					0.11707783973156438
IEKLSTLY	8	Unmodified	_IEKLSTLY_					0	0	0		nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH	nc|ENSG00000180176|P07101-6|TH	nc|ENSG00000180176|P07101-6|TH	MULTI-MSMS	HCT116MG_D190212_S2	2	483.7791748046875	2	483.778951	965.543348	0.17221	8.3311E-05	-0.12521	-6.0576E-05	0.046994	2.2735E-05	483.7788689449679	40.158	0.31229	40.085	39.945	40.258	-0.072838					6	5	2	0	0	0	0.40176	1	15164	15164		49.933	2.1843	1	11970000			14642	5586	8849	8899	14060	14060					0.05919822354474036
IEKMKLSGE	9	Unmodified	_IEKMKLSGE_					0	0	0			REV__tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	REV__tr|U7SGG0|U7SGG0_FUSNUGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=glmSPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2816772460938	2	517.781167	1033.54778	0.33589	0.00017392	-0.29059	-0.00015046	0.045301	2.3456E-05	517.7811665744418	31.879	0.52153	31.879	31.648	32.17	0					22	9	4	0	0	0	0.65706	1	11837	11837		7.9102	0	1	17909000	+		14643	17668	8850	8900	14061	14061					0.03234963505747146
IEKMLKPIE	9	Unmodified	_IEKMLKPIE_					0	0	0			REV__STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	REV__STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	550.27099609375	2	550.822835	1099.63112	0.44529	0.00024527	0.55008	0.000303	0.99537	0.00054827	551.3245723382607	43.342	0.26026	43.342	43.16	43.42	0					6	4	2	0	0	0	0.14768	1	16341	16341		43.772	0	1	8170600	+		14644	11581	8851	8901	14062	14062					0.08528699953581054
IEKRIQKY	8	Unmodified	_IEKRIQKY_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-SECPEP	HCT116MG_D190212_S2	2	540.0834350585938	2	539.324391	1076.63423	0.23966	0.00012926	1.002	0.00054042	1.2417	0.00066967	539.8260167688925	18.293	0.2612	17.93	17.747	18.008	-0.36325					6	4	2	0	0	0	0.28198	1	6296	6296		22.736	9.6938	1	4699600			14645	2535	8852	8902	14063	14063					0.09897711122607689
IEKRRQTHP	9	Unmodified	_IEKRRQTHP_					0	0	0			REV__ENSG00000168350|ENST00000305631|DEGS2	REV__ENSG00000168350|ENST00000305631|DEGS2	MULTI-MSMS	HCT116MG_D190212_S1	1	583.3486938476562	2	582.833446	1163.65234	0.41381	0.00024118	-0.76006	-0.00044299	-0.34625	-0.00020181	582.8327736500133	49.905	1.1337	49.905	49.44	50.574	0					40	21	2	0	0	0	0.71345	1	19200	19200		4.3292	4.3292	1	21936000	+		14646	13197	8853	8903	14064	14064					0.07705846097337599
IEKSEAAP	8	Unmodified	_IEKSEAAP_					0	0	0			REV__PHPT1|p.K59Sfs*13|1|0.41|ENSG00000054148|chr9:136850027-136850028|AA/-|frameshift_variant	REV__PHPT1|p.K59Sfs*13|1|0.41|ENSG00000054148|chr9:136850027-136850028|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	422.7246398925781	2	422.724175	843.433798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.499	1	25.219	24.719	25.719	-0.27958								0	0	0	0.8396	1	9039	9039		19.439	0.18201	1		+		14647	10632	8854	8904	14065	14065					0.005818167351435477
IEKSKVVL	8	Unmodified	_IEKSKVVL_					0	0	0		ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-4|DNAI7;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	MSMS	HCT116MG_D190212_S1	1	458.2956848144531	2	458.29731	914.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.294	1	52.294	51.794	52.794	0								0	0	0	0.8837	1	19998	19998		3.9444	1.6417	1				14648	2604	8855	8905	14066	14066					0.1193611897106166
IELAYEGKCI	10	Unmodified	_IELAYEGKCI_					0	0	0		FST|p.G232E|1|0.23|ENSG00000134363|chr5:53484267-53484267|G/A|missense_variant	FST|p.G232E|1|0.23|ENSG00000134363|chr5:53484267-53484267|G/A|missense_variant	FST|p.G232E|1|0.23|ENSG00000134363|chr5:53484267-53484267|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	570.3502197265625	2	569.794275	1137.574	0.39697	0.00022619	-1.9445	-0.001108	-1.5475	-0.00088176	569.7934640096713	46.369	0.46368	46.258	45.905	46.369	-0.11122					9	8	2	0	0	0	0.29442	1	17580	17580		14.838	2.3067	1	9273900			14649	9169	8856	8906	14067	14067					0.010712326772136294
IELKEYAT	8	Unmodified	_IELKEYAT_					0	0	0			REV__DYRK3|p.G467Vfs*21|1|0.52|ENSG00000143479|chr1:206648593-206648593|G/-|frameshift_variant	REV__DYRK3|p.G467Vfs*21|1|0.52|ENSG00000143479|chr1:206648593-206648593|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	483.7590026855469	2	483.760758	965.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.803	1	51.455	50.955	51.955	-0.34868								0	0	0	0.8837	1	19291	19291		9.3474	0	1		+		14650	10429	8857	8907	14068	14068					0.02282945457761798
IELRRKIGYVI	11	Unmodified	_IELRRKIGYVI_					0	0	0		tr|U7T2B1|U7T2B1_FUSNUOsmoprotectanttransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00646PE=3SV=1	tr|U7T2B1|U7T2B1_FUSNUOsmoprotectanttransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00646PE=3SV=1	tr|U7T2B1|U7T2B1_FUSNUOsmoprotectanttransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00646PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	680.02685546875	2	680.427179	1358.8398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.892	1	36.778	36.278	37.278	-0.11478								0	0	0	0.95705	1	13811	13811		5.7319	0	1				14651	18571	8858	8908	14069	14069					0.1747386458202982
IENGRKRCERY	11	Unmodified	_IENGRKRCERY_					0	0	0		PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant;ENSG00000072135|ENST00000175756|PTPN18	PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant	PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	712.1726684570312	2	712.364784	1422.71502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.898	1	18.715	18.215	19.215	-0.18339								0	0	0	0.94145	1	6374	6374		10.8	4.5937	1				14652	9792	8859	8909	14070	14070					0.020566241031929167
IENKTTVY	8	Unmodified	_IENKTTVY_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	HCT116MG_D190212_S3	3	484.25860595703125	2	484.258382	966.502212	0.071679	3.4711E-05	0.62825	0.00030424	0.69993	0.00033895	484.2585956101342	24.295	0.20785	24.233	24.103	24.311	-0.061449					5	3	2	0	0	0	0.55268	1	8649	8649		36.506	5.2379	1	2278900			14653	3057	8860	8910	14071	14071					0.017620613149915698
IENNLLELY	9	Unmodified	_IENNLLELY_					0	0	0		tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	tr|U7SLD7|U7SLD7_FUSNUHelicaseSNFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01975PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	561.3121337890625	2	560.797872	1119.58119	0.21841	0.00012248	-1.0923	-0.00061256	-0.87389	-0.00049008	561.298395652026	40.074	0.28922	39.773	39.666	39.955	-0.30137					8	5	3	0	0	0	0.1754	1	14861	14861		43.858	1.9027	1	5736900			14654	18336	8861	8911	14072	14072					0.026182885492971764
IENRNKDTIY	10	Unmodified	_IENRNKDTIY_					0	0	0			REV__ELMO1|p.E63D|1|0.29|ENSG00000155849|chr7:37314853-37314853|T/A|missense_variant	REV__ELMO1|p.E63D|1|0.29|ENSG00000155849|chr7:37314853-37314853|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	422.55377197265625	3	422.554331	1264.64116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.573	1	21.592	21.092	22.092	0.018446								0	0	0	0.64819	1	7524	7524		29.281	1.0475	1		+		14655	10452	8862	8912	14073	14073					0.01942979212526552
IENVKQHAK	9	Unmodified	_IENVKQHAK_					0	0	0			REV__CCDC146|p.K543Q|1|0.06|ENSG00000135205|chr7:77279034-77279034|A/C|missense_variant	REV__CCDC146|p.K543Q|1|0.06|ENSG00000135205|chr7:77279034-77279034|A/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.7345581054688	2	533.803823	1065.59309	0.44469	0.00023738	-0.12388	-6.6126E-05	0.32082	0.00017125	533.8035462142833	20.589	0.21257	20.21	20.076	20.289	-0.37949					6	3	2	0	0	0	0.18296	1	7208	7208		39.95	3.4435	1	14683000	+		14656	10107	8863	8913	14074	14074					0.06291950083118536
IENWNVRIYRD	11	Unmodified	_IENWNVRIYRD_					0	0	0			REV__ENSG00000188886|ENST00000342380|ASTL	REV__ENSG00000188886|ENST00000342380|ASTL	MSMS	HCT116MG_D190212_S4	4	739.378173828125	2	739.380957	1476.74736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.474	1	36.088	35.588	36.588	-0.38558								0	0	0	0.95273	1	13349	13349		4.897	1.6157	1		+		14657	13978	8864	8914	14075	14075					0.028057347778485564
IEPPKLLTRPR	11	Unmodified	_IEPPKLLTRPR_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MSMS	HCT116MG_D190212_S2	2	660.412109375	2	660.411529	1318.8085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.049	1	46.927	46.427	47.427	-0.12175								0	0	0	0.94145	1	17938	17938		10.8	2.644	1				14658	1556	8865	8915	14076	14076					0.1618529154791304
IEPSEEPL	8	Unmodified	_IEPSEEPL_					0	0	0		ENST00000505435.3_1_5:70900220-70936922:+|nuORF;ENST00000510895.6_1_5:70898342-70931145:+|nuORF;MCCC2|p.E346Vfs*11|1|0.08|ENSG00000131844|chr5:71641037-71641038|-/AG|frameshift_variant;MCCC2|p.F347Vfs*33|1|0.09|ENSG00000131844|chr5:71641039-71641040|-/A|frameshift_variant;MCCC2|p.T385Yfs*27|1|0.46|ENSG00000131844|chr5:71643888-71643889|-/A|frameshift_variant;nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	ENST00000505435.3_1_5:70900220-70936922:+|nuORF	ENST00000505435.3_1_5:70900220-70936922:+|nuORF	MSMS	HCT116MG_D190212_S4	4	457.22906494140625	2	457.22929	912.444028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.561	1	42.186	41.686	42.686	-0.37565								0	0	0	0.8837	1	15647	15647		15.768	0	1				14659	3158	8866	8916	14077	14077					-0.01569620330269572
IEPVPKKPQKK	11	Unmodified	_IEPVPKKPQKK_					0	0	0			REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	646.4080810546875	2	646.408455	1290.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.15	1	58.886	58.386	59.386	-0.26405								0	0	0	0.96149	1	22518	22518		0.30703	0	1		+		14660	10081	8867	8917	14078	14078					0.16858773316380393
IEQALKTA	8	Unmodified	_IEQALKTA_					0	0	0			REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	REV__tr|U7T780|U7T780_FUSNUPyruvate:ferredoxin(Flavodoxin)oxidoreductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00146PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	437.255859375	2	437.255643	872.496732	-0.21741	-9.5063E-05	0.54089	0.00023651	0.32348	0.00014144	437.2560368373442	30.44	0.2559	30.156	30.079	30.335	-0.28453					5	4	2	0	0	0	0.27593	1	11227	11227		61.357	0	1	17738000	+		14661	18007	8868	8918	14079	14079					0.05538382523184282
IEQDKQLIQ	9	Unmodified	_IEQDKQLIQ_					0	0	0			REV__ENSG00000204178|ENST00000374343|MACO1	REV__ENSG00000204178|ENST00000374343|MACO1	MULTI-MSMS	HCT116MG_D190212_S3	3	557.8078002929688	2	557.808771	1113.60299	0.36496	0.00020358	-0.40256	-0.00022455	-0.0376	-2.0974E-05	557.8084439588031	51.143	0.20921	50.831	50.7	50.91	-0.31166					5	3	2	0	0	0	0.53593	1	19333	19333		14.838	1.7958	1	3218000	+		14662	14184	8869	8919	14080	14080					0.05073093297869491
IEQLLDEGADP	11	Unmodified	_IEQLLDEGADP_					0	0	0		nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4-5|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	MULTI-MSMS	HCT116MG_D190212_S3	3	601.295654296875	2	600.29315	1198.57175	0.48853	0.00029326	0.23901	0.00014348	0.72754	0.00043674	601.2959161449928	31.994	1.3537	31.716	31.265	32.619	-0.27841					54	25	4	0	0	0	0.71271	1	11713	11713		17.113	3.2068	1	13968000			14663	1513	8870	8920	14081	14081					-0.019595245269101724
IEQQIQTY	8	Unmodified	_IEQQIQTY_					0	0	0		nc|ENSG00000182473|Q9UPT5-5|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENSG00000182473|ENST00000589210|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	MULTI-MSMS	HCT116MG_D190212_S1	1	1022.5164184570312	1	1022.5153	1021.50803	0.96113	0.00098277	0.20818	0.00021287	1.1693	0.0011956	1022.5154920168455	31.57	0.20826	31.57	31.44	31.648	0					5	3	2	0	0	0	0.21275	1	11648	11648		71.134	17.558	1	6557800			14664	9574	8871	8921	14082	14082					-0.0018684017333043812
IEQQIQTY	8	Unmodified	_IEQQIQTY_					0	0	0		nc|ENSG00000182473|Q9UPT5-5|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENSG00000182473|ENST00000589210|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	MULTI-MSMS	HCT116MG_D190212_S2	2	1022.516845703125	1	1022.5153	1021.50803	0.88738	0.00090736	0.4295	0.00043917	1.3169	0.0013465	1022.515536816256	31.733	0.25972	31.484	31.302	31.561	-0.24883					9	4	3	0	0	0	0.049954	1	11718	11718		123.45	30.959	1	44804000			14665	9574	8871	8921	14083	14083					-0.0018684017333043812
IEQQIQTY	8	Unmodified	_IEQQIQTY_					0	0	0		nc|ENSG00000182473|Q9UPT5-5|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENSG00000182473|ENST00000589210|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2630004882812	2	511.761289	1021.50803	0.4842	0.0002478	1.6443	0.00084147	2.1285	0.0010893	511.76098040458555	31.728	0.31091	31.48	31.302	31.613	-0.24883					13	5	4	0	0	0	0.19352	1	11732	11732		74.929	20.155	1	30305000			14666	9574	8871	8921	14084	14084					-0.0018684017333043812
IEQQIQTY	8	Unmodified	_IEQQIQTY_					0	0	0		nc|ENSG00000182473|Q9UPT5-5|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENSG00000182473|ENST00000589210|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	MULTI-MSMS	HCT116MG_D190212_S3	3	1022.5158081054688	1	1022.5153	1021.50803	0.53364	0.00054565	0.27506	0.00028125	0.80869	0.0008269	1022.5153333080269	31.882	0.20812	31.612	31.482	31.69	-0.27028					9	3	3	0	0	0	0.036435	1	11672	11672		139.14	46.647	1	15687000			14667	9574	8871	8921	14085	14085					-0.0018684017333043812
IEQQIQTY	8	Unmodified	_IEQQIQTY_					0	0	0		nc|ENSG00000182473|Q9UPT5-5|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENSG00000182473|ENST00000589210|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	MULTI-MSMS	HCT116MG_D190212_S3	3	511.76116943359375	2	511.761289	1021.50803	0.092694	4.7437E-05	-0.34898	-0.0001786	-0.25629	-0.00013116	511.7610571729136	31.882	0.20812	31.612	31.482	31.69	-0.27028					8	3	3	0	0	0	0.049954	1	11675	11675		123.45	34.547	1	13874000			14668	9574	8871	8921	14086	14086					-0.0018684017333043812
IEQQIQTY	8	Unmodified	_IEQQIQTY_					0	0	0		nc|ENSG00000182473|Q9UPT5-5|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENSG00000182473|ENST00000589210|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	MULTI-MSMS	HCT116MG_D190212_S4	4	1022.5164184570312	1	1022.5153	1021.50803	0.50459	0.00051595	-0.29593	-0.0003026	0.20866	0.00021336	1022.515168894233	31.991	0.25954	31.616	31.486	31.745	-0.37529					7	4	2	0	0	0	0.15965	1	11639	11639		81.613	10.479	1	4624000			14669	9574	8871	8921	14087	14087					-0.0018684017333043812
IEQQIQTY	8	Unmodified	_IEQQIQTY_					0	0	0		nc|ENSG00000182473|Q9UPT5-5|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENSG00000182473|ENST00000589210|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	MULTI-MSMS	HCT116MG_D190212_S4	4	511.76190185546875	2	511.761289	1021.50803	0.11195	5.7293E-05	-0.33537	-0.00017163	-0.22342	-0.00011434	511.7615315142478	31.991	0.25949	31.616	31.434	31.694	-0.37529					7	4	2	0	0	0	0.33298	1	11641	11641		56.177	18.203	1	2520000			14670	9574	8871	8921	14088	14088					-0.0018684017333043812
IEQQIQTY	8	Unmodified	_IEQQIQTY_					0	0	0		nc|ENSG00000182473|Q9UPT5-5|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF;nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENSG00000182473|ENST00000589210|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	nc|ENSG00000182473|Q9UPT5-5|EXOC7	MULTI-MATCH	HCT116MG_D190212_S1	1		2	511.761289	1021.50803	0.48959	0.00025055	1.3962	0.00071451	1.8858	0.00096506	511.7612569774688	31.546	0.20823	31.546	31.388	31.596	0	-0.017568	0.001708	NaN	123.45	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1560600			14671	9574	8871	8921							-0.0018684017333043812
IERDGTESY	9	Unmodified	_IERDGTESY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	535.2430419921875	2	535.24346	1068.47237	0.40589	0.00021725	-0.66457	-0.00035571	-0.25868	-0.00013846	535.2431774260002	21.267	0.20627	20.884	20.807	21.013	-0.38288					6	3	2	0	0	0	0.17622	1	7511	7511		43.772	13.136	1	8437700			14672	4883	8872	8922	14089	14089					-0.05912922420998257
IERLRRKIKYI	11	Unmodified	_IERLRRKIKYI_					0	0	0			REV__tr|U7SU99|U7SU99_FUSNUMFStransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01074PE=4SV=1	REV__tr|U7SU99|U7SU99_FUSNUMFStransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01074PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	744.1360473632812	2	744.480277	1486.946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.133	1	47.133	46.633	47.633	0								0	0	0	0.95954	1	17901	17901		1.3295	0.9789	1		+		14673	17824	8873	8923	14090	14090					0.22200620147350492
IERMVQEA	8	Unmodified	_IERMVQEA_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B	ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000109971|ENST00000534624|HSPA8	MSMS	HCT116MG_D190212_S2	2	488.2502746582031	2	488.250034	974.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.092	1	25.729	25.229	26.229	-0.36296								0	0	0	0.70963	1	9425	9425		29.841	7.1043	1				14674	2228;6330	8874	8924	14091	14091					-0.0027476284259364547
IERVLRDYS	9	Unmodified	_IERVLRDYS_					0	0	0		RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B;ENST00000549643.5_1_12:107168481-107254057:+|nuORF;ENST00000355478.6_1_12:107168481-107191766:+|nuORF	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	384.21307373046875	3	384.212017	1149.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.564	1	58.295	57.795	58.795	-0.26932								0	0	0	0.76948	1	22281	22281		2.7352	0.23671	1				14675	2315	8875	8925	14092	14092					0.04539915392001603
IERVLRDYS	9	Unmodified	_IERVLRDYS_					0	0	0		RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B;ENST00000549643.5_1_12:107168481-107254057:+|nuORF;ENST00000355478.6_1_12:107168481-107191766:+|nuORF	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	RIC8B|p.T320Qfs*8|1|0.12|ENSG00000111785|chr12:106842707-106842707|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	384.2131652832031	3	384.212017	1149.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.577	1	58.294	57.794	58.794	-0.28305								0	0	0	0.76995	1	22020	22020		1.0715	0	1				14676	2315	8875	8925	14093	14093					0.04539915392001603
IERYTGIGYA	10	Unmodified	_IERYTGIGYA_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	HCT116MG_D190212_S2	2	571.7952270507812	2	571.795663	1141.57677	0.47439	0.00027126	-0.17808	-0.00010182	0.29632	0.00016943	571.7954164104101	34.945	0.2588	34.787	34.657	34.916	-0.15834					7	4	2	0	0	0	0.68623	1	13048	13048		21.537	3.3906	1	17802000	+		14677	10573	8876	8926	14094	14094					0.011648241263856107
IESNHPVVIGP	11	Unmodified	_IESNHPVVIGP_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MSMS	HCT116MG_D190212_S1	1	581.740234375	2	581.316763	1160.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.217	1	23.217	22.717	23.717	0								0	0	0	0.81249	1	8258	8258		31.268	10.854	1				14678	3456	8877	8927	14095	14095					0.04508799534755781
IETELIYKY	9	Unmodified	_IETELIYKY_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MSMS	HCT116MG_D190212_S1	1	586.3157958984375	2	586.315897	1170.61724	0.46717	0.00027391	-0.074161	-4.3482E-05	0.393	0.00023042	586.3157515204998	44.437	0.26491	44.437	44.304	44.568	0					8	4	2	0	0	0	0.023778	1	16833	16833		92.653	52.696	1	22905000			14679	3241	8878	8928	14096	14096					0.038757457261453965
IETELIYKY	9	Unmodified	_IETELIYKY_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MSMS	HCT116MG_D190212_S2	2	586.3169555664062	2	586.315897	1170.61724	0.66302	0.00038874	0.14896	8.7335E-05	0.81198	0.00047607	586.315827467024	44.487	0.31355	44.402	44.274	44.588	-0.084797					15	5	4	0	0	0	0.01405	1	16897	16897		103.35	55.605	1	98072000			14680	3241	8878	8928	14097	14097					0.038757457261453965
IETELIYKY	9	Unmodified	_IETELIYKY_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MSMS	HCT116MG_D190212_S3	3	586.3161010742188	2	586.315897	1170.61724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.757	1	44.448	43.948	44.948	-0.30927								0	0	0	0.037224	1	16738	16738		75.761	22.357	1				14681	3241	8878	8928	14098	14098					0.038757457261453965
IETFEEEII	9	Unmodified	_IETFEEEII_					0	0	0			REV__tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	REV__tr|U7SV10|U7SV10_FUSNUMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferaseTrmFOOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmFOPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	374.8573913574219	3	374.857017	1121.54922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.487	1	39.107	38.607	39.607	-0.38055								0	0	0	0.71969	1	14510	14510		12.241	3.4953	1		+		14682	17838	8879	8929	14099	14099					-0.0066912392451286
IETHLFAFEI	10	Unmodified	_IETHLFAFEI_					0	0	0		ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MULTI-MSMS	HCT116MG_D190212_S2	2	610.32177734375	2	610.321514	1218.62847	0.60611	0.00036992	-0.26206	-0.00015994	0.34404	0.00020998	610.3212808701049	57.67	0.25886	57.495	57.367	57.626	-0.17494					8	4	3	0	0	0	0.77749	1	22284	22284		13.906	0.86358	1	12813000			14683	4670	8880	8930	14100	14100					0.027905678202841955
IETIIKEQF	9	Unmodified	_IETIIKEQF_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	HCT116MG_D190212_S2	2	560.8161010742188	2	560.816064	1119.61758	0.6418	0.00035993	-0.59608	-0.00033429	0.045723	2.5642E-05	560.8155024448249	44.626	0.31433	44.541	44.325	44.639	-0.084797					9	5	2	0	0	0	0.0096585	1	16964	16964		114.19	54.818	1	23871000			14684	4643	8881	8931	14101	14101					0.06255165445986677
IEVEQALAH	9	Unmodified	_IEVEQALAH_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	HCT116MG_D190212_S1	1	505.2696533203125	2	505.269281	1008.52401	0.41177	0.00020806	0.053931	2.725E-05	0.46571	0.00023531	505.26919076883746	34.259	0.15638	34.259	34.181	34.337	0					4	2	2	0	0	0	0.042978	1	12734	12734		78.149	38.192	1	6769500			14685	1657	8882	8932	14102	14102					0.020088660635678934
IEVEQALAH	9	Unmodified	_IEVEQALAH_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	HCT116MG_D190212_S2	2	505.26947021484375	2	505.269281	1008.52401	0.64672	0.00032677	-0.17732	-8.9596E-05	0.4694	0.00023717	505.26918835528807	34.389	0.31121	34.214	34.02	34.331	-0.17511					9	5	3	0	0	0	0.031089	1	12811	12811		85.272	27.55	1	20628000			14686	1657	8882	8932	14103	14103					0.020088660635678934
IEVIRLFFWY	10	Unmodified	_IEVIRLFFWY_					0	0	0		TMEM216|p.G77Wfs*16|1|0.17|ENSG00000187049|chr11:61393969-61393970|-/T|frameshift_variant	TMEM216|p.G77Wfs*16|1|0.17|ENSG00000187049|chr11:61393969-61393970|-/T|frameshift_variant	TMEM216|p.G77Wfs*16|1|0.17|ENSG00000187049|chr11:61393969-61393970|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	693.3827514648438	2	693.384448	1384.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.123	1	48.969	48.469	49.469	-0.15405								0	0	0	0.90475	1	18790	18790		14.838	1.7958	1				14687	18274	8883	8933	14104	14104					0.07735699396380369
IEWEKPEHY	9	Unmodified	_IEWEKPEHY_					0	0	0		GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant;ENSG00000178295|ENST00000381254|GEN1	GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant	GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	411.198974609375	3	410.864506	1229.57169	0.084512	3.4723E-05	0.41029	0.00016857	0.4948	0.0002033	411.19903117726824	33.346	0.25867	33.346	33.193	33.452	0					7	4	2	0	0	0	0.12994	1	12364	12364		47.594	30.022	1	6723200			14688	5495	8884	8934	14105	14105					-0.03391479736251313
IEWEKPEHY	9	Unmodified	_IEWEKPEHY_					0	0	0		GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant;ENSG00000178295|ENST00000381254|GEN1	GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant	GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	615.7936401367188	2	615.793121	1229.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.357	1	33.357	32.857	33.857	0								0	0	0	0.006	1	12342	12342		114.2	60.369	1				14689	5495	8884	8934	14106	14106					-0.03391479736251313
IEWQTSEIEY	10	Unmodified	_IEWQTSEIEY_					0	0	0			REV__ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant	REV__ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	649.8008422851562	2	649.300975	1296.5874	0.76384	0.00049596	-4.0452	-0.0026265	-3.2813	-0.0021306	649.8003052860236	34.519	0.20827	34.519	34.337	34.545	0					5	3	2	0	0	0	0.31047	1	12819	12819		49.554	7.5987	1	9226400	+		14690	13871	8885	8935	14107	14107					-0.049032380098424255
IEWQTSEIEY	10	Unmodified	_IEWQTSEIEY_					0	0	0			REV__ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant	REV__ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	649.300975	1296.5874	0.76384	0.00049596	-4.0452	-0.0026265	-3.2813	-0.0021306	649.8003052860236	34.519	0.20827	34.519	34.337	34.545	0	0.047444	-6.7932E-05	NaN	49.554	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9226400	+		14691	13871	8885	8935							-0.049032380098424255
IEWQTSEIEY	10	Unmodified	_IEWQTSEIEY_					0	0	0			REV__ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant	REV__ZNF566|p.F128Lfs*25|1|0.12|ENSG00000186017|chr19:36449850-36449850|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	649.300975	1296.5874	0.89753	0.00058277	-3.9456	-0.0025619	-3.0481	-0.0019791	649.8007338343854	34.583	0.20552	34.424	34.296	34.502	-0.15834	-0.047444	6.1358E-05	NaN	49.554	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50016000	+		14692	13871	8885	8935							-0.049032380098424255
IEWVQLPPA	9	Unmodified	_IEWVQLPPA_					0	0	0			REV__ENST00000564768.1_1_16:30198028-30198313:+|nuORF	REV__ENST00000564768.1_1_16:30198028-30198313:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.80859375	2	526.792392	1051.57023	0.34129	0.00017979	-3.0367	-0.0015997	-2.6954	-0.0014199	526.7902392444427	30.904	0.15538	30.637	30.56	30.716	-0.26704					4	2	2	0	0	0	0.23301	1	11378	11378		6.7232	0	1	5897000	+		14693	16523	8886	8936	14108	14108					0.046509309656585174
IEYKYFRLYK	10	Unmodified	_IEYKYFRLYK_					0	0	0			REV__tr|U7SGI8|U7SGI8_FUSNUPreproteintranslocasesubunitSecBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02185PE=4SV=1	REV__tr|U7SGI8|U7SGI8_FUSNUPreproteintranslocasesubunitSecBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02185PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	711.8919677734375	2	711.892638	1421.77072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.346	1	58.076	57.576	58.576	-0.26932								0	0	0	0.95507	1	22193	22193		3.5965	0	1		+		14694	17671	8887	8937	14109	14109					0.07670780562466462
IEYKYRFE	8	Unmodified	_IEYKYRFE_					0	0	0		nc|ENSG00000172432|Q9BX10-4|GTPBP2	nc|ENSG00000172432|Q9BX10-4|GTPBP2	nc|ENSG00000172432|Q9BX10-4|GTPBP2	MULTI-MSMS	HCT116MG_D190212_S1	1	383.1974182128906	3	383.197596	1146.57096	-0.1716	-6.5758E-05	-0.18862	-7.228E-05	-0.36023	-0.00013804	383.19742337380984	25.013	0.2621	25.013	24.83	25.092	0					6	4	2	0	0	0	0.79062	1	8988	8988		9.3831	2.346	1	6506700			14695	9550	8888	8938	14110	14110					0.003537256147183143
IEYPTGSGNVY	11	Unmodified	_IEYPTGSGNVY_					0	0	0		IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	600.2824096679688	2	600.282586	1198.55062	-0.24411	-0.00014653	0.39251	0.00023562	0.14841	8.9087E-05	600.2825938319293	38.41	0.31298	38.41	38.227	38.54	0					11	5	3	0	0	0	2.1742E-05	1	14382	14382		168.54	106.94	1	45057000			14696	2656	8889	8939	14111	14111					-0.04071489835723696
IEYPTGSGNVY	11	Unmodified	_IEYPTGSGNVY_					0	0	0		IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1199.55859375	1	1199.55789	1198.55062	0.45411	0.00054474	0.28908	0.00034676	0.74319	0.0008915	1199.5582600616278	38.492	0.31709	38.408	38.227	38.544	-0.084618					11	5	3	0	0	0	0.0038737	1	14467	14467		143.91	103.96	1	54717000			14697	2656	8889	8939	14112	14112					-0.04071489835723696
IEYPTGSGNVY	11	Unmodified	_IEYPTGSGNVY_					0	0	0		IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	600.282958984375	2	600.282586	1198.55062	0.62444	0.00037484	-0.061561	-3.6954E-05	0.56288	0.00033789	600.282440055505	38.446	0.4755	38.354	38.167	38.643	-0.09214					23	8	4	0	0	0	0.0027806	1	14486	14486		148.27	98.335	1	137500000			14698	2656	8889	8939	14113	14113					-0.04071489835723696
IEYPTGSGNVY	11	Unmodified	_IEYPTGSGNVY_					0	0	0		IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	600.281005859375	2	600.282586	1198.55062	0.43745	0.0002626	-0.44061	-0.00026449	-0.0031567	-1.8949E-06	600.2819771622536	38.682	0.41668	38.38	38.196	38.613	-0.30137					18	7	4	0	0	0	3.8637E-05	1	14339	14339		160.69	112.94	1	32399000			14699	2656	8889	8939	14114	14114					-0.04071489835723696
IEYPTGSGNVY	11	Unmodified	_IEYPTGSGNVY_					0	0	0		IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1199.55908203125	1	1199.55789	1198.55062	0.43405	0.00052066	0.15924	0.00019102	0.59329	0.00071168	1199.557950018975	38.68	0.31276	38.378	38.248	38.561	-0.30137					8	5	2	0	0	0	0.011471	1	14364	14364		136.39	96.442	1	6923500			14700	2656	8889	8939	14115	14115					-0.04071489835723696
IEYPTGSGNVY	11	Unmodified	_IEYPTGSGNVY_					0	0	0		IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	601.0180053710938	2	600.282586	1198.55062	1.1393	0.00068393	0.24751	0.00014858	1.3869	0.0008325	600.2829342619972	38.775	0.30688	38.393	38.232	38.539	-0.38163					7	5	2	0	0	0	0.60456	2	14266	14235;14266		34.932	20.527	1	7198500			14701	2656	8889	8939	14116;14117	14117					-0.04071489835723696
IEYPTGSGNVY	11	Unmodified	_IEYPTGSGNVY_					0	0	0		IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1199.55789	1198.55062	-0.11685	-0.00014016	-0.17541	-0.00021041	-0.29225	-0.00035057	1199.5574882806468	38.41	0.20865	38.41	38.279	38.488	0	0.011172	-0.00043796	NaN	143.91	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9568500			14702	2656	8889	8939							-0.04071489835723696
IFAAKGAA	8	Unmodified	_IFAAKGAA_					0	0	0			REV__ENST00000355377.6_1_16:19278394-19278601:+|nuORF	REV__ENST00000355377.6_1_16:19278394-19278601:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	748.4354248046875	1	748.435201	747.427924	1.2375	0.00092622	-0.33845	-0.00025331	0.8991	0.00067292	748.4348326131569	44.699	0.31265	44.614	44.482	44.794	-0.084797					9	5	2	0	0	0	0.64761	1	16995	16995		28.173	0	1	46708000	+		14703	15037	8890	8940	14118	14118					0.044107630141297705
IFAALLGNHIL	11	Unmodified	_IFAALLGNHIL_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;FAM120A|p.V551Sfs*6|1|0.21|ENSG00000048828|chr9:93529491-93529491|C/-|frameshift_variant;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;ENSG00000184083|ENST00000375180|FAM120C	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MSMS	HCT116MG_D190212_S4	4	591.3585815429688	2	591.355691	1180.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.731	1	55.419	54.919	55.919	-0.312								0	0	0	0.94924	1	20876	20876		6.7232	1.4925	1				14704	1037	8891	8941	14119	14119					0.11370857190809147
IFARQWVS	8	Unmodified	_IFARQWVS_					0	0	0		ENST00000524495.5_1_11:7669669-7672116:+|nuORF;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2	ENST00000524495.5_1_11:7669669-7672116:+|nuORF	ENST00000524495.5_1_11:7669669-7672116:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	503.77679443359375	2	503.777077	1005.5396	0.45104	0.00022722	-0.64774	-0.00032632	-0.1967	-9.9094E-05	503.7769392140268	55.182	0.25379	54.994	54.918	55.171	-0.18797					6	4	2	0	0	0	0.81097	1	21299	21299		10.183	0.83596	1	36339000			14705	4846	8892	8942	14120	14120					0.037051973712891595
IFDIPPENVDQ	11	Unmodified	_IFDIPPENVDQ_					0	0	0		ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	MSMS	HCT116MG_D190212_S2	2	643.8171997070312	2	643.816793	1285.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.448	1	37.345	36.845	37.845	-0.10318								0	0	0	0.92235	1	14037	14037		17.113	3.2068	1				14706	2270	8893	8943	14121	14121					-0.012352452559071025
IFGGWYGE	8	Unmodified	_IFGGWYGE_					0	0	0		HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	MULTI-MSMS	HCT116MG_D190212_S2	2	464.71380615234375	2	464.713611	927.412668	0.48405	0.00022495	0.046818	2.1757E-05	0.53087	0.0002467	464.71351052853	35.806	0.41201	35.663	35.489	35.901	-0.14245					16	7	4	0	0	0	0.5791	1	13360	13360		34.187	2.0704	1	118200000			14707	9220	8894	8944	14122	14122					-0.05394148573725488
IFGGWYGE	8	Unmodified	_IFGGWYGE_					0	0	0		HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	MULTI-MSMS	HCT116MG_D190212_S2	2	928.42138671875	1	928.419945	927.412668	1.269	0.0011782	1.6407	0.0015233	2.9098	0.0027015	928.4197803185936	35.783	0.20532	35.641	35.541	35.746	-0.14245					6	3	2	0	0	0	0.50777	1	13374	13374		40.449	4.4044	1	17130000			14708	9220	8894	8944	14123	14123					-0.05394148573725488
IFGGWYGE	8	Unmodified	_IFGGWYGE_					0	0	0		HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	464.713611	927.412668	0.48405	0.00022495	0.046818	2.1757E-05	0.53087	0.0002467	464.71351052853	35.806	0.41201	35.663	35.489	35.901	-0.14245	-0.020131	-1.3755E-05	NaN	34.187	16	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118200000			14709	9220	8894	8944							-0.05394148573725488
IFGGWYGE	8	Unmodified	_IFGGWYGE_					0	0	0		HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	HERVH-int_dup3522|chrX:4540915-4541307:-|3.3067715530513007|0.0009310524769523|11.79|451.0|13|1|anti-sense	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	464.713611	927.412668	0.13654	6.3451E-05	0.17846	8.2932E-05	0.315	0.00014638	464.71344513824266	36.004	0.31182	35.704	35.574	35.886	-0.30042	0.020131	0.00010859	NaN	34.187	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8249100			14710	9220	8894	8944							-0.05394148573725488
IFGLDLKEV	9	Unmodified	_IFGLDLKEV_					0	0	0		ENSG00000177689|ENST00000356790|MAGEB10	ENSG00000177689|ENST00000356790|MAGEB10	ENSG00000177689|ENST00000356790|MAGEB10	MULTI-MSMS	HCT116MG_D190212_S1	1	517.2996826171875	2	517.30005	1032.58555	0.45357	0.00023463	-0.78641	-0.00040681	-0.33283	-0.00017217	517.2995173096859	52.664	0.2058	52.664	52.536	52.742	0					6	3	2	0	0	0	0.16144	1	20175	20175		46.021	0	1	17958000			14711	5469	8895	8945	14124	14124					0.07055797762859584
IFHDHESENQ	10	Unmodified	_IFHDHESENQ_					0	0	0			REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	628.841552734375	2	628.270541	1254.52653	0.60673	0.00038119	-2.5561	-0.0016059	-1.9493	-0.0012247	628.2690587515651	36.661	0.41459	36.546	36.187	36.602	-0.11479					9	7	2	0	0	0	0.87801	1	13698	13698		3.9444	0	1	17102000	+		14712	17971	8896	8946	14125	14125					-0.09055330269416118
IFHDHESENQ	10	Unmodified	_IFHDHESENQ_					0	0	0			REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	628.270541	1254.52653	0.60673	0.00038119	-2.5561	-0.0016059	-1.9493	-0.0012247	628.2690587515651	36.661	0.41459	36.546	36.187	36.602	-0.11479	-0.01829	-0.00025268	NaN	3.9444	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17102000	+		14713	17971	8896	8946							-0.09055330269416118
IFHDHESENQ	10	Unmodified	_IFHDHESENQ_					0	0	0			REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	628.270541	1254.52653	0.41199	0.00025884	-2.2025	-0.0013838	-1.7905	-0.0011249	628.2696574911733	36.884	0.25987	36.583	36.457	36.717	-0.30113	0.01829	0.00019154	NaN	3.9444	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5004300	+		14714	17971	8896	8946							-0.09055330269416118
IFHSDLPMP	9	Unmodified	_IFHSDLPMP_					0	0	0		nc|ENSG00000163867|O95789-5|ZMYM6;ENST00000493328.5_1_1:35452707-35454621:-|nuORF	nc|ENSG00000163867|O95789-5|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	MULTI-MSMS	HCT116MG_D190212_S1	1	528.7623901367188	2	528.762778	1055.511	0.18879	9.9824E-05	0.14484	7.6585E-05	0.33363	0.00017641	528.7627578059127	44.168	0.57934	44.168	43.884	44.464	0					19	10	2	0	0	0	0.30509	1	16695	16695		30.225	1.738	1	30624000			14715	8359	8897	8947	14126	14126					-0.014532883201809454
IFHSDLPMP	9	Unmodified	_IFHSDLPMP_					0	0	0		nc|ENSG00000163867|O95789-5|ZMYM6;ENST00000493328.5_1_1:35452707-35454621:-|nuORF	nc|ENSG00000163867|O95789-5|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	MULTI-SECPEP	HCT116MG_D190212_S4	4	529.2644653320312	2	528.762778	1055.511	0.44591	0.00023578	0.33284	0.00017599	0.77875	0.00041177	528.7628012232933	44.501	0.78904	44.128	43.572	44.361	-0.37342					37	18	3	0	0	0	0.23716	1	16479	16479		8.5933	0	1	21042000			14716	8359	8897	8947	14127	14127					-0.014532883201809454
IFILKLKIPSK	11	Unmodified	_IFILKLKIPSK_					0	0	0			REV__nc|ENSG00000128918|O94788-3|ALDH1A2	REV__nc|ENSG00000128918|O94788-3|ALDH1A2	MSMS	HCT116MG_D190212_S4	4	650.4400024414062	2	650.441766	1298.86898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.781	1	62.536	62.036	63.036	-0.24438								0	0	0	0.96141	1	23708	23708		0.35063	0	1		+		14717	17124	8898	8948	14128	14128					0.23150008878292283
IFKAELDKERR	11	Unmodified	_IFKAELDKERR_					0	0	0			REV__KIF16B|p.F1272Sfs*3|1|0.36|ENSG00000089177|chr20:16273392-16273392|A/-|frameshift_variant;REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MSMS	HCT116MG_D190212_S1	1	702.90234375	2	702.901525	1403.7885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.029	1	15.029	14.529	15.529	0								0	0	0	0.95113	1	4964	4964		5.7319	0.83484	1		+		14718	10971;17089	8899	8949	14129	14129					0.10275495817290903
IFKCLPPL	8	Unmodified	_IFKCLPPL_					0	0	0			REV__ENST00000414393.5_1_20:25604747-25614685:+|nuORF	REV__ENST00000414393.5_1_20:25604747-25614685:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	465.77728271484375	2	465.777699	929.540846	-0.012145	-5.657E-06	0.58939	0.00027453	0.57725	0.00026887	465.77781070622785	42.461	0.56751	42.461	42.123	42.69	0					14	10	2	0	0	0	0.86388	1	15985	15985		2.8892	0	1	10641000	+		14719	15462	8900	8950	14130	14130					0.07325695415806877
IFKKTRKKVI	10	Unmodified	_IFKKTRKKVI_					0	0	0			REV__ENST00000510078.5_1_3:129115194-129117890:-|nuORF	REV__ENST00000510078.5_1_3:129115194-129117890:-|nuORF	MSMS	HCT116MG_D190212_S3	3	420.9560241699219	3	420.95533	1259.84416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.926	1	47.61	47.11	48.11	-0.31596								0	0	0	0.97045	1	18011	18011		0.15932	0	1		+		14720	12428	8901	8951	14131	14131					0.2246337379558554
IFKLAKMV	8	Unmodified	_IFKLAKMV_					0	0	0		tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	475.298828125	2	475.298799	948.583045	0.024656	1.1719E-05	0.44951	0.00021365	0.47416	0.00022537	475.2989399176937	48.091	0.46557	48.091	47.789	48.254	0					14	8	2	0	0	0	0.86388	1	18272	18272		2.8892	2.8892	1	13058000			14721	18401	8902	8952	14132	14132					0.10669670824199784
IFKLAKMV	8	Unmodified	_IFKLAKMV_					0	0	0		tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	475.298799	948.583045	0.024656	1.1719E-05	0.44951	0.00021365	0.47416	0.00022537	475.2989399176937	48.091	0.46557	48.091	47.789	48.254	0	0	0	NaN	2.8892	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13058000			14722	18401	8902	8952							0.10669670824199784
IFKNVKMK	8	Unmodified	_IFKNVKMK_					0	0	0		ENSG00000136928|ENST00000259455|GABBR2	ENSG00000136928|ENST00000259455|GABBR2	ENSG00000136928|ENST00000259455|GABBR2	MSMS	HCT116MG_D190212_S1	1	504.2984619140625	2	504.307155	1006.59976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.047	1	55.047	54.547	55.547	0								0	0	0	0.8837	1	21127	21127		5.7604	0	1				14723	3443	8903	8953	14133	14133					0.09672171710155908
IFKSMLFLPCL	11	Unmodified	_IFKSMLFLPCL_					0	0	0		STEAP1|p.I307M|1|0.16|ENSG00000164647|chr7:90164635-90164635|A/G|missense_variant	STEAP1|p.I307M|1|0.16|ENSG00000164647|chr7:90164635-90164635|A/G|missense_variant	STEAP1|p.I307M|1|0.16|ENSG00000164647|chr7:90164635-90164635|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	656.362548828125	2	656.363813	1310.71307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.255	1	41.187	40.687	41.687	-0.068199								0	0	0	0.92235	1	15582	15582		17.113	0	1				14724	18239	8904	8954	14134	14134					0.07014479041026789
IFKYFQERNFK	11	Unmodified	_IFKYFQERNFK_					0	0	0			REV__nc|ENSG00000135749|A6NKB5-2|PCNX2	REV__nc|ENSG00000135749|A6NKB5-2|PCNX2	MSMS	HCT116MG_D190212_S3	3	760.4036254882812	2	760.406444	1518.79833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.478	1	55.186	54.686	55.686	-0.2918								0	0	0	0.95023	1	21045	21045		6.2058	2.9245	1		+		14725	12104	8905	8955	14135	14135					0.0596868382269804
IFKYINSLP	9	Unmodified	_IFKYINSLP_					0	0	0			REV__FOXB2|p.D38N|1|0.47|ENSG00000204612|chr9:77019766-77019766|G/A|missense_variant	REV__FOXB2|p.D38N|1|0.47|ENSG00000204612|chr9:77019766-77019766|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	547.9955444335938	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.675	1	51.492	50.992	51.992	-0.18369								0	0	0	0.74436	1	19833	19833		16.942	2.104	1		+		14726	16832	8906	8956	14136	14136					0.07411790516789551
IFLEKEIDI	9	Unmodified	_IFLEKEIDI_					0	0	0		ENSG00000186393|ENST00000335552|KRT26;CON__Q7Z3Y9	ENSG00000186393|ENST00000335552|KRT26	ENSG00000186393|ENST00000335552|KRT26	MSMS	HCT116MG_D190212_S2	2	560.296142578125	2	560.31844	1118.62233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.29	1	57.111	56.611	57.611	-0.17904								0	0	0	0.46109	1	22118	22118		30.637	3.7529	1			+	14727	583	8907	8957	14137	14137					0.06776049588756905
IFLFIVGV	8	Unmodified	_IFLFIVGV_					0	0	0		nc|ENSG00000070985|Q9NZQ8-3|TRPM5;ENSG00000070985|ENST00000696290|TRPM5;nc|ENSG00000070985|Q9NZQ8-2|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MSMS	HCT116MG_D190212_S1	1	454.28607177734375	2	454.286214	906.557876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.868	1	39.868	39.368	40.368	0								0	0	0	0.8837	1	14968	14968		6.3541	0	1				14728	1248	8908	8958	14138	14138					0.10085939293287538
IFLLAPLM	8	Unmodified	_IFLLAPLM_					0	0	0		nc|ENSG00000182077|Q3KNS1|PTCHD3;nc|ENSG00000182077|Q3KNS1-2|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	MSMS	HCT116MG_D190212_S3	3	459.2801818847656	2	459.280075	916.545597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.771	1	53.471	52.971	53.971	-0.29946								0	0	0	0.8837	1	20359	20359		2.8892	0	1				14729	9570	8909	8959	14139	14139					0.08398579558593156
IFLLIRFHPL	10	Unmodified	_IFLLIRFHPL_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MSMS	HCT116MG_D190212_S3	3	634.8982543945312	2	634.897526	1267.7805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.046	1	47.73	47.23	48.23	-0.31596								0	0	0	0.96291	1	18060	18060		1.8442	0.19162	1				14730	6272	8910	8960	14140	14140					0.15732013358501717
IFLLKKLYRT	10	Unmodified	_IFLLKKLYRT_					0	0	0		ENST00000397137.5_2_20:36146318-36146510:-|nuORF	ENST00000397137.5_2_20:36146318-36146510:-|nuORF	ENST00000397137.5_2_20:36146318-36146510:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2802734375	3	432.279703	1293.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.12	1	29.763	29.263	30.263	-0.3571								0	0	0	0.97045	1	10906	10906		0.15932	0	1				14731	7664	8911	8961	14141	14141					0.1821226518441108
IFLNRRRRRER	11	Unmodified	_IFLNRRRRRER_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	HCT116MG_D190212_S1	1	524.654296875	3	524.653708	1570.93929	0.52065	0.00027316	0.94509	0.00049584	1.4657	0.000769	524.6540617951061	20.774	0.20852	20.774	20.644	20.852	0					9	3	3	0	0	0	0.74191	1	7300	7300		0.45452	0.087843	1	7814300			14732	4088	8912	8962	14142	14142					0.17666120039348243
IFLRILKAF	9	Unmodified	_IFLRILKAF_					0	0	0			REV__ENSG00000065325|ENST00000262441|GLP2R	REV__ENSG00000065325|ENST00000262441|GLP2R	MSMS	HCT116MG_D190212_S2	2	374.2462158203125	3	374.246222	1119.71684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.511	1	61.369	60.869	61.869	-0.14227								0	0	0	0.76991	1	23826	23826		1.1933	0.12188	1		+		14733	10698	8913	8963	14143	14143					0.16176652921399182
IFNEKKKV	8	Unmodified	_IFNEKKKV_					0	0	0			REV__tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	REV__tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	503.3063659667969	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.936	1	40.558	40.058	41.058	-0.37732								0	0	0	0.8837	1	15036	15036		2.3027	0	1		+		14734	17908	8914	8964	14144	14144					0.09974923719619255
IFPVLGGPI	9	Unmodified	_IFPVLGGPI_					0	0	0			REV__ENST00000448373.6_1_19:37068233-37068374:+|nuORF	REV__ENST00000448373.6_1_19:37068233-37068374:+|nuORF	MSMS	HCT116MG_D190212_S4	4	456.779052734375	2	456.781296	911.54804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.424	1	37.04	36.54	37.54	-0.3839								0	0	0	0.51205	1	13733	13733		28.173	6.4266	1		+		14735	15693	8915	8965	14145	14145					0.08872751287913161
IFQHFCEEI	9	Unmodified	_IFQHFCEEI_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MSMS	HCT116MG_D190212_S3	3	389.1810302734375	3	389.18307	1164.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.087	1	45.774	45.274	46.274	-0.31237								0	0	0	0.76886	1	17274	17274		4.897	1.0207	1				14736	1354	8916	8966	14146	14146					-0.04830207154054733
IFQIPRTK	8	Unmodified	_IFQIPRTK_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MSMS	HCT116MG_D190212_S2	2	501.8065185546875	2	501.808377	1001.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.888	1	56.709	56.209	57.209	-0.17904								0	0	0	0.8837	1	21956	21956		5.7604	0	1				14737	6687	8917	8967	14147	14147					0.10146343439464545
IFRALSFLVVS	11	Unmodified	_IFRALSFLVVS_					0	0	0		tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1	tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1	tr|U7T5A6|U7T5A6_FUSNUCadmium-translocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00154PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	417.9217529296875	3	417.920174	1250.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.097	1	55.791	55.291	56.291	-0.30626								0	0	0	0.95976	1	21021	21021		1.2148	0.70888	1				14738	18625	8918	8968	14148	14148					0.12335412879292562
IFRCYFFQEI	10	Unmodified	_IFRCYFFQEI_					0	0	0		CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant	CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant	CFAP43|p.D1520Ifs*15|1|0.35|ENSG00000197748|chr10:104133658-104133658|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	683.0069580078125	2	683.336641	1364.65873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.312	1	48.996	48.496	49.496	-0.31596								0	0	0	0.83705	1	18567	18567		24.021	0.23079	1				14739	414	8919	8969	14149	14149					-0.00901396786184705
IFRDLSVLW	9	Unmodified	_IFRDLSVLW_					0	0	0			REV__sp|F5H8Q3|UL148_HCMVMMembraneproteinUL148OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL148PE=3SV=1	REV__sp|F5H8Q3|UL148_HCMVMMembraneproteinUL148OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL148PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	574.824951171875	2	574.826766	1147.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.793	1	40.723	40.223	41.223	-0.069626								0	0	0	0.67173	1	15394	15394		20.454	1.0917	1		+		14740	17546	8920	8970	14150	14150					0.07106595265372562
IFREICNVF	9	Unmodified	_IFREICNVF_					0	0	0			REV__ENST00000419283.1_1_2:162933923-162934139:-|nuORF	REV__ENST00000419283.1_1_2:162933923-162934139:-|nuORF	MSMS	HCT116MG_D190212_S2	2	570.7972412109375	2	570.797152	1139.57975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.377	1	57.202	56.702	57.702	-0.17494								0	0	0	0.67173	1	22153	22153		20.454	3.5113	1		+		14741	15505	8921	8971	14151	14151					0.015543759795264123
IFRIIHKFWK	10	Unmodified	_IFRIIHKFWK_					0	0	0			REV__ENST00000409175.5_1_2:160599702-160602296:+|nuORF	REV__ENST00000409175.5_1_2:160599702-160602296:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	463.2839660644531	3	463.283559	1386.82885	0.37711	0.00017471	0.049729	2.3039E-05	0.42684	0.00019775	463.2834982177215	53.939	1.5145	53.639	52.777	54.291	-0.29946					43	28	2	0	0	0	0.89116	1	20545	20545		0.77653	0.27058	1	5484300	+		14742	15430	8922	8972	14152	14152					0.15090506998399178
IFRKFLLML	9	Unmodified	_IFRKFLLML_					0	0	0		ENSG00000153976|ENST00000284110|HS3ST3A1;HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant	ENSG00000153976|ENST00000284110|HS3ST3A1	ENSG00000153976|ENST00000284110|HS3ST3A1	MULTI-MSMS	HCT116MG_D190212_S1	1	394.24737548828125	3	394.247345	1179.72021	0.0066404	2.618E-06	-0.8108	-0.00031965	-0.80415	-0.00031704	394.24697997888427	54.405	0.20264	54.405	54.282	54.485	0					8	3	3	0	0	0	0.75853	1	20879	20879		1.1933	0	1	86329000			14743	4201	8923	8973	14153	14153					0.13753579703779906
IFSDWCHDM	9	Unmodified	_IFSDWCHDM_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	HCT116MG_D190212_S3	3	385.1529541015625	3	385.152893	1152.43685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.823	1	5.8405	5.3405	6.3405	0.017489								0	0	0	0.77008	1	1764	1764		0.26902	0.1097	1		+		14744	13036	8924	8974	14154	14154					-0.1332699947402034
IFTFGSYR	8	Unmodified	_IFTFGSYR_					0	0	0		ENSG00000218823|ENST00000404991|PAPOLB;PAPOLB|p.K446Sfs*28|1|0.38|ENSG00000218823|chr7:4860474-4860474|T/-|frameshift_variant;ENSG00000090060|ENST00000216277|PAPOLA;PAPOLG|p.E134*|1|0.15|ENSG00000115421|chr2:60768844-60768845|-/T|frameshift_variant;nc|ENSG00000090060|P51003-2|PAPOLA;PAPOLG|p.T602Lfs*8|1|0.46|ENSG00000115421|chr2:60794000-60794000|C/-|frameshift_variant;PAPOLG|p.R682Kfs*18|2|0.34|ENSG00000115421|chr2:60794759-60794760|-/A|frameshift_variant;nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG	ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	HCT116MG_D190212_S2	2	495.755615234375	2	495.75581	989.497067	0.30583	0.00015162	-0.50331	-0.00024952	-0.19748	-9.7904E-05	495.75557163235516	46.247	0.36065	46.146	45.966	46.327	-0.1014					9	6	2	0	0	0	0.31873	1	17637	17637		57.471	19.497	1	29032000			14745	6461	8925	8975	14155	14155					0.0018980224305096272
IFTTIATHKR	10	Unmodified	_IFTTIATHKR_					0	0	0			REV__OR6C68|p.L61Sfs*7|1|0.15|ENSG00000205327|chr12:55492551-55492551|T/-|frameshift_variant	REV__OR6C68|p.L61Sfs*7|1|0.15|ENSG00000205327|chr12:55492551-55492551|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	594.3501586914062	2	594.348397	1186.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.36	1	47.045	46.545	47.545	-0.31525								0	0	0	0.81484	1	17783	17783		26.884	5.137	1		+		14746	14222	8926	8976	14156	14156					0.09636785042630436
IFTVMFFIQLS	11	Unmodified	_IFTVMFFIQLS_					0	0	0			REV__ENST00000290858.10_1_16:67133987-67134095:+|nuORF	REV__ENST00000290858.10_1_16:67133987-67134095:+|nuORF	MSMS	HCT116MG_D190212_S2	2	673.363525390625	2	673.364867	1344.71518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.096	1	57.926	57.426	58.426	-0.1703								0	0	0	0.93552	1	22443	22443		13.906	3.8321	1		+		14747	14746	8927	8977	14157	14157					0.056612310505215646
IFVLLHKPRS	10	Unmodified	_IFVLLHKPRS_					0	0	0			REV__ENSG00000100422|ENST00000216264|CERK	REV__ENSG00000100422|ENST00000216264|CERK	MSMS	HCT116MG_D190212_S1	1	605.82177734375	2	605.376958	1208.73936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.562	1	46.562	46.062	47.062	0								0	0	0	0.95179	1	17670	17670		4.3292	0.73274	1		+		14748	11084	8928	8978	14158	14158					0.14334252319008556
IFVMFLLV	8	Unmodified	_IFVMFLLV_					0	0	0			REV__tr|U7STU7|U7STU7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01575PE=4SV=1	REV__tr|U7STU7|U7STU7_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01575PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	491.2962341308594	2	491.295725	980.576897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.195	1	58.195	57.695	58.695	0								0	0	0	0.8837	1	22410	22410		2.8892	0	1		+		14749	17812	8929	8979	14159	14159					0.08583152592689203
IFVRRGGP	8	Unmodified	_IFVRRGGP_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MSMS	HCT116MG_D190212_S4	4	451.27001953125	2	451.271961	900.52937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.829	1	45.457	44.957	45.957	-0.37206								0	0	0	0.8837	1	16920	16920		6.3541	0.59368	1				14750	3145	8930	8980	14160	14160					0.07512634436704957
IFWQRLYKQEV	11	Unmodified	_IFWQRLYKQEV_					0	0	0			REV__LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	REV__LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	503.9442443847656	3	503.945271	1508.81398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.666	1	49.666	49.166	50.166	0								0	0	0	0.95976	1	18931	18931		1.2148	0.76031	1		+		14751	16971	8931	8981	14161	14161					0.07992970339728345
IFYKVQKDK	9	Unmodified	_IFYKVQKDK_					0	0	0			REV__ENST00000558893.5_1_15:79165359-79184661:+|nuORF	REV__ENST00000558893.5_1_15:79165359-79184661:+|nuORF	MSMS	HCT116MG_D190212_S2	2	390.2275085449219	3	390.229008	1167.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.018	1	54.83	54.33	55.33	-0.18797								0	0	0	0.76998	1	21197	21197		0.96228	0	1		+		14752	13856	8932	8982	14162	14162					0.08806864436837714
IGADWLESV	9	Unmodified	_IGADWLESV_					0	0	0			REV__ENST00000509087.1_1_5:140053844-140054778:-|nuORF	REV__ENST00000509087.1_1_5:140053844-140054778:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	989.4947509765625	1	989.493838	988.486562	1.0505	0.0010395	-0.24774	-0.00024514	0.80274	0.00079431	989.4933173527476	44.802	0.36473	44.717	44.482	44.846	-0.084797					15	6	3	0	0	0	0.12335	1	17028	17028		53.576	6.6547	1	59294000	+		14753	13298	8933	8983	14163	14163					-0.00814225202043417
IGADWLESV	9	Unmodified	_IGADWLESV_					0	0	0			REV__ENST00000509087.1_1_5:140053844-140054778:-|nuORF	REV__ENST00000509087.1_1_5:140053844-140054778:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	989.493838	988.486562	0.51498	0.00050957	0.16457	0.00016284	0.67955	0.00067241	989.493720140852	44.698	0.20826	44.698	44.568	44.777	0	-0.009378	0.00032517	NaN	53.576	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16702000	+		14754	13298	8933	8983							-0.00814225202043417
IGADWLESV	9	Unmodified	_IGADWLESV_					0	0	0			REV__ENST00000509087.1_1_5:140053844-140054778:-|nuORF	REV__ENST00000509087.1_1_5:140053844-140054778:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	989.493838	988.486562	1.0505	0.0010395	-0.24774	-0.00024514	0.80274	0.00079431	989.4933173527476	44.802	0.36473	44.717	44.482	44.846	-0.084797	0.009378	-8.2813E-05	NaN	53.576	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59294000	+		14755	13298	8933	8983							-0.00814225202043417
IGAGEILALL	10	Unmodified	_IGAGEILALL_					0	0	0			REV__ENST00000482943.1_1_1:201932715-201938679:+|nuORF	REV__ENST00000482943.1_1_1:201932715-201938679:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	969.5985107421875	1	969.597909	968.590633	0.69789	0.00067668	0.16532	0.0001603	0.86322	0.00083697	969.5976302546505	57.932	0.15701	57.757	57.678	57.835	-0.17494					4	2	2	0	0	0	0.05249	1	22402	22402		85.357	14.223	1	26490000	+		14756	12054	8934	8984	14164	14164					0.10508101625475774
IGAKEIAGQI	10	Unmodified	_IGAKEIAGQI_					0	0	0			REV__ENST00000524833.5_1_11:107992333-108005114:+|nuORF	REV__ENST00000524833.5_1_11:107992333-108005114:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7927551269531	2	500.295299	998.576045	0.42849	0.00021437	-0.5205	-0.0002604	-0.09201	-4.6032E-05	500.295055361231	41.373	0.3582	41.305	41.089	41.447	-0.068199					12	6	3	0	0	0	0.54141	1	15610	15610		32.305	1.6689	1	59877000	+		14757	10806	8935	8985	14165	14165					0.07670029477333173
IGAKTRKW	8	Unmodified	_IGAKTRKW_					0	0	0			REV__ENST00000561440.1_1_15:83207600-83207885:-|nuORF	REV__ENST00000561440.1_1_15:83207600-83207885:-|nuORF	MSMS	HCT116MG_D190212_S4	4	480.2915344238281	2	480.292894	958.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.784	1	29.435	28.935	29.935	-0.34921								0	0	0	0.8837	1	10770	10770		6.3541	1.1234	1		+		14758	16492	8936	8986	14166	14166					0.09029190125215791
IGALRRLGL	9	Unmodified	_IGALRRLGL_					0	0	0		ENST00000566151.1_1_16:84853614-84869924:+|nuORF	ENST00000566151.1_1_16:84853614-84869924:+|nuORF	ENST00000566151.1_1_16:84853614-84869924:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	485.2662353515625	2	484.821818	967.629084	0.31105	0.00015081	-0.19249	-9.3324E-05	0.11856	5.7483E-05	484.8218043972868	46.725	0.25963	46.725	46.595	46.855	0					6	4	2	0	0	0	0.024841	1	17748	17748		86.121	26.326	1	15585000			14759	8862	8937	8987	14167	14167					0.14397452050650372
IGALRRLGL	9	Unmodified	_IGALRRLGL_					0	0	0		ENST00000566151.1_1_16:84853614-84869924:+|nuORF	ENST00000566151.1_1_16:84853614-84869924:+|nuORF	ENST00000566151.1_1_16:84853614-84869924:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.8218994140625	2	484.821818	967.629084	0.65687	0.00031847	-0.055124	-2.6725E-05	0.60175	0.00029174	484.82152696884714	46.762	0.30876	46.651	46.471	46.78	-0.11121					10	5	3	0	0	0	0.065643	1	17825	17825		67.035	16.18	1	36004000			14760	8862	8937	8987	14168	14168					0.14397452050650372
IGANKVLIQL	10	Unmodified	_IGANKVLIQL_					0	0	0			REV__AKAP9|p.P2795L|1|0.35|ENSG00000127914|chr7:92083393-92083393|C/T|missense_variant	REV__AKAP9|p.P2795L|1|0.35|ENSG00000127914|chr7:92083393-92083393|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	535.8323364257812	2	534.842416	1067.67028	0.35693	0.0001909	-0.076319	-4.0819E-05	0.28061	0.00015008	534.8423149780476	56.892	0.15608	56.892	56.789	56.945	0					6	2	3	0	0	0	0.86862	1	21898	21898		6.2058	1.3088	1	7841600	+		14761	9907	8938	8988	14169	14169					0.1391516829946795
IGCCFYFLILL	11	Unmodified	_IGCCFYFLILL_					0	0	0			REV__ENST00000606080.1_1_6:116381649-116381904:-|nuORF	REV__ENST00000606080.1_1_6:116381649-116381904:-|nuORF	MSMS	HCT116MG_D190212_S3	3	435.5645446777344	3	435.564234	1303.67087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.954	1	14.029	13.529	14.529	0.074899								0	0	0	0.96111	1	4460	4460		0.50596	0	1		+		14762	16767	8939	8989	14170	14170					0.031185036326633053
IGDAFWKEHP	10	Unmodified	_IGDAFWKEHP_					0	0	0		ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	MSMS	HCT116MG_D190212_S4	4	600.299072265625	2	600.29583	1198.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.654	1	21.435	20.935	21.935	-0.21832								0	0	0	0.90023	1	7488	7488		15.847	1.9411	1				14763	2377	8940	8990	14171	14171					-0.014237561537584043
IGDAFWVRKQ	10	Unmodified	_IGDAFWVRKQ_					0	0	0			REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	MSMS	HCT116MG_D190212_S1	1	610.2722778320312	2	610.332747	1218.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.313	1	22.313	21.813	22.813	0								0	0	0	0.94107	1	7893	7893		6.7232	0	1		+		14764	10586	8941	8991	14172	14172					0.050362120085537754
IGDEEFERFLE	11	Unmodified	_IGDEEFERFLE_					0	0	0		ENSG00000134321|ENST00000382040|RSAD2	ENSG00000134321|ENST00000382040|RSAD2	ENSG00000134321|ENST00000382040|RSAD2	MSMS	HCT116MG_D190212_S2	2	462.1466064453125	3	461.885747	1382.63541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.595	1	15.268	14.768	15.768	-0.32684								0	0	0	0.96111	1	5192	5192		0.50596	0.051438	1				14765	3278	8942	8992	14173	14173					-0.04060164089787577
IGDELTELFV	10	Unmodified	_IGDELTELFV_					0	0	0			REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MSMS	HCT116MG_D190212_S2	2	1135.589111328125	1	1135.58813	1134.58086	0.66774	0.00075828	-0.28852	-0.00032764	0.37922	0.00043064	1135.588005069237	57.67	0.20755	57.495	57.418	57.626	-0.17494					7	3	3	0	0	0	0.28012	1	22297	22297		52.268	2.3353	1	19162000	+		14766	12487	8943	8993	14174	14174					0.018948688293903615
IGDELTELFV	10	Unmodified	_IGDELTELFV_					0	0	0			REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1135.58813	1134.58086	0.53854	0.00061156	-0.20147	-0.00022878	0.33708	0.00038278	1135.5876341525136	57.49	0.15599	57.49	57.36	57.516	0	-0.0026191	7.5135E-05	NaN	52.268	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7656500	+		14767	12487	8943	8993							0.018948688293903615
IGDELTELFV	10	Unmodified	_IGDELTELFV_					0	0	0			REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1135.58813	1134.58086	0.66774	0.00075828	-0.28852	-0.00032764	0.37922	0.00043064	1135.588005069237	57.67	0.20755	57.495	57.418	57.626	-0.17494	0.0026191	-2.372E-05	NaN	52.268	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19162000	+		14768	12487	8943	8993							0.018948688293903615
IGDQPSGYVR	10	Unmodified	_IGDQPSGYVR_					0	0	0			REV__nc|ENSG00000127838|Q8N490-4|PNKD	REV__nc|ENSG00000127838|Q8N490-4|PNKD	MSMS	HCT116MG_D190212_S4	4	546.2771606445312	2	546.277638	1090.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.48	1	25.2	24.7	25.7	-0.27958								0	0	0	0.75654	1	9031	9031		34.402	9.0024	1		+		14769	11863	8944	8994	14175	14175					-0.0009263305048534676
IGDSSSSAEFF	11	Unmodified	_IGDSSSSAEFF_					0	0	0		nc|ENSG00000163630|Q8TBG9|SYNPR;ENSG00000163630|ENST00000478300|SYNPR	nc|ENSG00000163630|Q8TBG9|SYNPR	nc|ENSG00000163630|Q8TBG9|SYNPR	MULTI-SECPEP	HCT116MG_D190212_S4	4	573.7516479492188	2	573.751118	1145.48768	0.43249	0.00024814	0.23268	0.0001335	0.66517	0.00038164	573.75134715135	22.553	0.20782	22.315	22.237	22.445	-0.23758					5	3	2	0	0	0	0.36183	1	7887	7887		5.7319	0	1	1426900			14770	4616	8945	8995	14176	14176					-0.0792405562381191
IGFAAAWLFLI	11	Unmodified	_IGFAAAWLFLI_					0	0	0			REV__ENST00000529014.5_1_11:10880352-10886865:+|nuORF	REV__ENST00000529014.5_1_11:10880352-10886865:+|nuORF	MSMS	HCT116MG_D190212_S1	1	407.9060363769531	3	407.905865	1220.69577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.349	1	51.349	50.849	51.849	0								0	0	0	0.95925	1	19616	19616		0.50596	0	1		+		14771	16297	8946	8996	14177	14177					0.09424642821863927
IGFAQPVRP	9	Unmodified	_IGFAQPVRP_					0	0	0			REV__ENST00000444465.1_1_6:166401068-166401386:-|nuORF	REV__ENST00000444465.1_1_6:166401068-166401386:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	492.7847900390625	2	492.784902	983.55525	0.30588	0.00015073	0.20193	9.9508E-05	0.50781	0.00025024	492.7848242195069	42.096	0.67393	42.028	41.549	42.223	-0.068195					23	12	3	0	0	0	0.24973	1	15937	15937		36.044	0	1	30538000	+		14772	15663	8947	8997	14178	14178					0.06281483888324146
IGFATRTETG	10	Unmodified	_IGFATRTETG_					0	0	0			REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	MULTI-MSMS	HCT116MG_D190212_S1	1	351.5171203613281	3	351.517218	1051.52982	-0.14294	-5.0247E-05	0.19089	6.7102E-05	0.047948	1.6854E-05	351.51721526163385	23.392	0.20882	23.392	23.314	23.523	0					6	3	2	0	0	0	0.65652	1	8351	8351		15.739	2.8827	1	9403900	+		14773	12191	8948	8998	14179	14179					0.006119645752278302
IGGAWGLL	8	Unmodified	_IGGAWGLL_					0	0	0			REV__ENST00000495200.1_1_2:198365187-198365367:+|nuORF	REV__ENST00000495200.1_1_2:198365187-198365367:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	393.7290954589844	2	393.729064	785.443575	0.0010607	4.1763E-07	0.24596	9.6843E-05	0.24702	9.7261E-05	393.72903461031575	42.939	0.35913	42.869	42.689	43.049	-0.069984					13	6	3	0	0	0	0.8029	1	16269	16269		11.114	0	1	273630000	+		14774	16084	8949	8999	14180	14180					0.042270495311981904
IGGDIPFIFFY	11	Unmodified	_IGGDIPFIFFY_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|195|2|anti-sense;L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|149|2|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|195|2|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|195|2|anti-sense	MSMS	HCT116MG_D190212_S3	3	644.8367919921875	2	644.834257	1287.65396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.169	1	34.87	34.37	35.37	-0.29884								0	0	0	0.93717	1	12972	12972		13.042	2.9685	1				14775	9283	8950	9000	14181	14181					0.02164042342724315
IGGGWAPY	8	Unmodified	_IGGGWAPY_					0	0	0			REV__ENST00000587861.5_1_19:10822805-10823081:+|nuORF	REV__ENST00000587861.5_1_19:10822805-10823081:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	410.7030334472656	2	410.703046	819.391539	-0.25868	-0.00010624	0.35983	0.00014778	0.10115	4.1541E-05	410.7031849347774	39.672	0.35719	39.594	39.428	39.785	-0.077835					9	6	2	0	0	0	0.8029	1	14954	14954		11.114	0	1	25874000	+		14776	15522	8951	9001	14182	14182					-0.025381138825764538
IGGGWAPY	8	Unmodified	_IGGGWAPY_					0	0	0			REV__ENST00000587861.5_1_19:10822805-10823081:+|nuORF	REV__ENST00000587861.5_1_19:10822805-10823081:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	410.703046	819.391539	-0.2448	-0.00010054	0.56997	0.00023409	0.32516	0.00013355	410.7031376368688	39.683	0.26058	39.683	39.501	39.761	0	0.044497	8.7955E-05	NaN	11.114	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6235900	+		14777	15522	8951	9001							-0.025381138825764538
IGGGWAPY	8	Unmodified	_IGGGWAPY_					0	0	0			REV__ENST00000587861.5_1_19:10822805-10823081:+|nuORF	REV__ENST00000587861.5_1_19:10822805-10823081:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	410.703046	819.391539	-0.25868	-0.00010624	0.35983	0.00014778	0.10115	4.1541E-05	410.7031849347774	39.672	0.35719	39.594	39.428	39.785	-0.077835	-0.044497	-8.4655E-05	NaN	11.114	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25874000	+		14778	15522	8951	9001							-0.025381138825764538
IGGRDDFISSN	11	Unmodified	_IGGRDDFISSN_					0	0	0			REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	591.1649169921875	2	590.783284	1179.55202	0.57683	0.00034078	-0.25233	-0.00014907	0.32449	0.00019171	590.7831619335196	23.601	0.26104	23.601	23.418	23.679	0					6	4	2	0	0	0	0.74191	1	8358	8358		6.2058	0	1	5633700	+		14779	13968	8952	9002	14183	14183					-0.030578557469880252
IGGTNVGEDI	10	Unmodified	_IGGTNVGEDI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	HCT116MG_D190212_S2	2	487.2510986328125	2	487.743096	973.47164	0.3061	0.0001493	0.11821	5.7658E-05	0.42431	0.00020695	487.7434970140251	23.813	0.20856	23.429	23.299	23.508	-0.38324					5	3	2	0	0	0	0.27023	1	8464	8464		19.257	4.6753	1	4254500			14780	3727	8953	9003	14184	14184					-0.016157170700353163
IGGVSLGPGA	10	Unmodified	_IGGVSLGPGA_					0	0	0		ENSG00000149927|ENST00000350119|DOC2A;ENST00000564357.5_1_16:30017509-30018480:-|nuORF	ENSG00000149927|ENST00000350119|DOC2A	ENSG00000149927|ENST00000350119|DOC2A	MSMS	HCT116MG_D190212_S3	3	414.2347717285156	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.98	1	21.981	21.481	22.481	0.00074577								0	0	0	0.78893	1	7687	7687		30.225	3.8835	1				14781	4076	8954	9004	14185	14185					0.034698268346687655
IGGVSLGPGA	10	Unmodified	_IGGVSLGPGA_					0	0	0		ENSG00000149927|ENST00000350119|DOC2A;ENST00000564357.5_1_16:30017509-30018480:-|nuORF	ENSG00000149927|ENST00000350119|DOC2A	ENSG00000149927|ENST00000350119|DOC2A	MSMS	HCT116MG_D190212_S4	4	414.54595947265625	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.128	1	21.9	21.4	22.4	-0.22777								0	0	0	0.84381	1	7680	7680		23.148	2.6948	1				14782	4076	8954	9004	14186	14186					0.034698268346687655
IGIEEFFAQFL	11	Unmodified	_IGIEEFFAQFL_					0	0	0			REV__ENSG00000221886|ENST00000408953|FAM200C	REV__ENSG00000221886|ENST00000408953|FAM200C	MSMS	HCT116MG_D190212_S1	1	657.3416748046875	2	657.342446	1312.67034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.193	1	33.193	32.693	33.693	0								0	0	0	0.95023	1	12275	12275		6.2058	0	1		+		14783	14290	8955	9005	14187	14187					0.02651123508803721
IGIEMIKKRLI	11	Unmodified	_IGIEMIKKRLI_					0	0	0			REV__ENST00000370382.7_2_1:92546128-92605069:+|nuORF	REV__ENST00000370382.7_2_1:92546128-92605069:+|nuORF	MSMS	HCT116MG_D190212_S2	2	657.4183349609375	2	657.420508	1312.82646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.68	1	57.505	57.005	58.005	-0.17494								0	0	0	0.93717	1	22276	22276		13.042	0.80181	1		+		14784	15155	8956	9006	14188	14188					0.1825629047843904
IGKDEDGP	8	Unmodified	_IGKDEDGP_					0	0	0			REV__MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	REV__MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	830.42529296875	1	830.389039	829.381762	1.0325	0.0008574	0.41231	0.00034238	1.4448	0.0011998	830.3889344262348	28.727	0.7292	28.519	28.123	28.852	-0.20777					30	13	3	0	0	0	0.19963	1	10456	10456		57.471	0	1	14396000	+		14785	10175	8957	9007	14189	14189					-0.03975346678612368
IGKKQRKKII	10	Unmodified	_IGKKQRKKII_					0	0	0			REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant	REV__NRK|p.I782Lfs*66|1|0.3|ENSG00000123572|chrX:105912744-105912744|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	606.7166137695312	2	606.419157	1210.82376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.666	1	46.666	46.166	47.166	0								0	0	0	0.96911	1	17712	17712		0.45834	0.057624	1		+		14786	11768	8958	9008	14190	14190					0.22678203135797048
IGKRVKRIIV	10	Unmodified	_IGKRVKRIIV_					0	0	0		tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	591.5056762695312	2	591.413875	1180.8132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.172	1	24.172	23.672	24.672	0								0	0	0	0.96291	1	8642	8642		1.8442	0.19162	1				14787	18513	8959	9009	14191	14191					0.230022204813622
IGLCWLLA	8	Unmodified	_IGLCWLLA_					0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	MSMS	HCT116MG_D190212_S3	3	444.7556457519531	2	444.754224	887.493896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.968	1	32.683	32.183	33.183	-0.28511								0	0	0	0.86899	1	12103	12103		17.087	0	1				14788	2916	8960	9010	14192	14192					0.04564835864687211
IGLEELLPP	9	Unmodified	_IGLEELLPP_					0	0	0			REV__ENST00000508754.1_1_5:143543641-143549519:-|nuORF	REV__ENST00000508754.1_1_5:143543641-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	980.5665283203125	1	980.566275	979.558998	0.79189	0.0007765	0.059581	5.8424E-05	0.85147	0.00083492	980.5660350576969	57.231	0.77811	57.052	56.844	57.622	-0.17904					29	14	3	0	0	0	0.035402	1	22091	22091		81.864	3.8797	1	12207000	+		14789	12462	8961	9011	14193	14193					0.06840108871517714
IGLEELLPP	9	Unmodified	_IGLEELLPP_					0	0	0			REV__ENST00000508754.1_1_5:143543641-143549519:-|nuORF	REV__ENST00000508754.1_1_5:143543641-143549519:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	980.566275	979.558998	0.79189	0.0007765	0.059581	5.8424E-05	0.85147	0.00083492	980.5660350576969	57.231	0.77811	57.052	56.844	57.622	-0.17904	-0.088093	-3.8657E-05	NaN	81.864	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12207000	+		14790	12462	8961	9011							0.06840108871517714
IGLEELLPP	9	Unmodified	_IGLEELLPP_					0	0	0			REV__ENST00000508754.1_1_5:143543641-143549519:-|nuORF	REV__ENST00000508754.1_1_5:143543641-143549519:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	980.566275	979.558998	0.94042	0.00092214	0.93211	0.00091399	1.8725	0.0018361	980.5678469937518	57.503	0.46989	57.229	56.89	57.36	-0.27434	0.088093	0.00081691	NaN	81.864	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1084700	+		14791	12462	8961	9011							0.06840108871517714
IGLHTLARY	9	Unmodified	_IGLHTLARY_					0	0	0			REV__nc|ENSG00000221986|A2RUH7-2|MYBPHL	REV__nc|ENSG00000221986|A2RUH7-2|MYBPHL	MSMS	HCT116MG_D190212_S4	4	522.30322265625	2	522.303458	1042.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.534	1	34.149	33.649	34.649	-0.38558								0	0	0	0.76818	1	12614	12614		7.2892	0.56607	1		+		14792	14295	8962	9012	14194	14194					0.07277155434098859
IGLKRLQPRKL	11	Unmodified	_IGLKRLQPRKL_					0	0	0			REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF	REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF	MSMS	HCT116MG_D190212_S4	4	441.2972717285156	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.669	1	13.506	13.006	14.006	-0.16233								0	0	0	0.9619	1	4296	4296		0.094841	0	1		+		14793	16329	8963	9013	14195	14195					0.22417277055819795
IGLPVPHITA	10	Unmodified	_IGLPVPHITA_					0	0	0		TMEM39A|p.P49H|1|0.18|ENSG00000176142|chr3:119458208-119458208|G/T|missense_variant	TMEM39A|p.P49H|1|0.18|ENSG00000176142|chr3:119458208-119458208|G/T|missense_variant	TMEM39A|p.P49H|1|0.18|ENSG00000176142|chr3:119458208-119458208|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	509.78021240234375	2	509.30821	1016.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.011	1	23.011	22.511	23.511	0								0	0	0	0.93854	1	8175	8175		7.2892	0.56607	1				14794	18276	8964	9014	14196	14196					0.09422923719603205
IGLVPLLFVP	10	Unmodified	_IGLVPLLFVP_					0	0	0		nc|ENSG00000244694|Q6ZW05-4|PTCHD4;PTCHD4|p.F810Sfs*25|1|0.45|ENSG00000244694|chr6:47878415-47878415|A/-|frameshift_variant;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	MSMS	HCT116MG_D190212_S4	4	534.347900390625	2	534.346803	1066.67905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.611	1	37.227	36.727	37.727	-0.3839								0	0	0	0.96291	1	13808	13808		1.8442	0	1				14795	6568	8965	9015	14197	14197					0.14838141935956628
IGNHTEFLDEK	11	Unmodified	_IGNHTEFLDEK_					0	0	0		ENST00000474123.1_1_7:105190513-105195680:+|nuORF;ENSG00000135249|ENST00000257700|RINT1	ENST00000474123.1_1_7:105190513-105195680:+|nuORF	ENST00000474123.1_1_7:105190513-105195680:+|nuORF	MSMS	HCT116MG_D190212_S4	4	434.8822937011719	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4016	1	9.1919	8.6919	9.6919	-0.20971								0	0	0	0.95954	1	2874	2874		0.45452	0	1				14796	3334	8966	9016	14198	14198					-0.013567270243811436
IGQSLLNIAS	10	Unmodified	_IGQSLLNIAS_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MSMS	HCT116MG_D190212_S1	1	508.2927551269531	2	508.292756	1014.57096	0.34586	0.0001758	-0.26828	-0.00013636	0.077577	3.9432E-05	508.29253829263473	22.998	0.2081	22.998	22.898	23.106	0					5	3	2	0	0	0	0.81435	1	8200	8200		10.824	0	1	2928700	+		14797	13212	8967	9017	14199	14199					0.06425725614701605
IGQVNWRSKD	10	Unmodified	_IGQVNWRSKD_					0	0	0			REV__ENST00000306085.10_3_7:100734537-100734684:+|nuORF	REV__ENST00000306085.10_3_7:100734537-100734684:+|nuORF	MSMS	HCT116MG_D190212_S3	3	401.6709899902344	3	401.5474	1201.62037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.582	1	12.644	12.144	13.144	0.06246								0	0	0	0.96836	1	3935	3935		0.62683	0.35781	1		+		14798	14809	8968	9018	14200	14200					0.027624336235021474
IGRIKKPQ	8	Unmodified	_IGRIKKPQ_					0	0	0			REV__ENSG00000198087|ENST00000359314|CD2AP	REV__ENSG00000198087|ENST00000359314|CD2AP	MSMS	HCT116MG_D190212_S4	4	470.3085632324219	2	470.308544	938.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.291	1	31.913	31.413	32.413	-0.37836								0	0	0	0.8837	1	11755	11755		14.582	3.4672	1		+		14799	14108	8969	9019	14201	14201					0.13077763159310507
IGSGLYDEAI	10	Unmodified	_IGSGLYDEAI_					0	0	0		nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13;TTC13|p.R627Nfs*8|1|0.19|ENSG00000143643|chr1:230921438-230921439|TC/-|frameshift_variant	nc|ENSG00000143643|Q8NBP0-2|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	MULTI-MSMS	HCT116MG_D190212_S1	1	519.26171875	2	519.261122	1036.50769	0.52191	0.00027101	0.96079	0.0004989	1.4827	0.00076991	519.2614467235771	35.656	0.57019	35.656	35.371	35.942	0					14	10	2	0	0	0	0.56527	1	13304	13304		30.637	1.555	1	14347000			14800	3826	8970	9020	14202	14202					-0.00910259893203147
IGVGRRKG	8	Unmodified	_IGVGRRKG_					0	0	0			REV__ENST00000514254.2_1_12:124412777-124412945:-|nuORF	REV__ENST00000514254.2_1_12:124412777-124412945:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	421.76922607421875	2	421.769586	841.524619	0.064133	2.7049E-05	-0.29508	-0.00012446	-0.23095	-9.7408E-05	421.7693227907666	52.716	0.25805	52.716	52.587	52.845	0					8	4	2	0	0	0	0.87576	1	20195	20195		0.79363	0	1	12724000	+		14801	16199	8971	9021	14203	14203					0.09751750293935402
IGVGRRKG	8	Unmodified	_IGVGRRKG_					0	0	0			REV__ENST00000514254.2_1_12:124412777-124412945:-|nuORF	REV__ENST00000514254.2_1_12:124412777-124412945:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	421.769586	841.524619	0.064133	2.7049E-05	-0.29508	-0.00012446	-0.23095	-9.7408E-05	421.7693227907666	52.716	0.25805	52.716	52.587	52.845	0	0	0	NaN	0.79363	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12724000	+		14802	16199	8971	9021							0.09751750293935402
IGVLLFAMK	9	Unmodified	_IGVLLFAMK_					0	0	0			REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1	REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1	MULTI-MSMS	HCT116MG_D190212_S1	1	496.303955078125	2	496.304081	990.59361	0.44813	0.00022241	-0.25572	-0.00012691	0.19241	9.5494E-05	496.303891458161	46.576	1.1386	46.576	46.027	47.165	0					36	21	3	0	0	0	0.71898	1	17695	17695		3.9444	3.9444	1	72929000	+		14803	14224	8972	9022	14204	14204					0.09793653478629949
IGVRIRSKW	9	Unmodified	_IGVRIRSKW_					0	0	0		THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant;THSD7B|p.A1522Lfs*3|1|0.32|ENSG00000144229|chr2:137663476-137663476|A/-|frameshift_variant;ENSG00000144229|ENST00000409968|THSD7B	THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant	THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	558.314453125	2	557.845825	1113.6771	0.63436	0.00035387	-0.69076	-0.00038534	-0.056401	-3.1463E-05	557.845602623537	41.835	0.20822	41.835	41.706	41.914	0					6	3	2	0	0	0	0.26745	1	15715	15715		4.3292	0	1	10494000			14804	3855	8973	9023	14205	14205					0.12480525970704548
IGVSELSKWHE	11	Unmodified	_IGVSELSKWHE_					0	0	0			REV__PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	REV__PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	428.8910827636719	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.409	1	13.479	12.979	13.979	0.069158								0	0	0	0.96121	1	4250	4250		0.45452	0	1		+		14805	12016	8974	9024	14206	14206					0.020521672179029338
IGVTVLSQL	9	Unmodified	_IGVTVLSQL_					0	0	0		XPO7|p.I154V|1|0.3|ENSG00000130227|chr8:21971909-21971909|A/G|missense_variant	XPO7|p.I154V|1|0.3|ENSG00000130227|chr8:21971909-21971909|A/G|missense_variant	XPO7|p.I154V|1|0.3|ENSG00000130227|chr8:21971909-21971909|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	465.28533935546875	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.497	1	52.309	51.809	52.809	-0.18725								0	0	0	0.76669	1	20168	20168		12.532	0	1				14806	18703	8975	9025	14207	14207					0.09219528591370363
IGVVKVGLV	9	Unmodified	_IGVVKVGLV_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MSMS	HCT116MG_D190212_S1	1	442.3023681640625	2	442.302396	882.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.344	1	49.344	48.844	49.844	0								0	0	0	0.50556	1	18800	18800		28.487	3.0875	1				14807	9557	8976	9026	14208	14208					0.1442472669629069
IGVVYDKFWP	10	Unmodified	_IGVVYDKFWP_					0	0	0		ENST00000328046.8_1_X:24005008-24005134:-|nuORF	ENST00000328046.8_1_X:24005008-24005134:-|nuORF	ENST00000328046.8_1_X:24005008-24005134:-|nuORF	MSMS	HCT116MG_D190212_S3	3	408.4269714355469	3	408.553492	1222.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.843	1	13.918	13.418	14.418	0.074899								0	0	0	0.96769	1	4417	4417		0.77653	0	1				14808	7150	8977	9027	14209	14209					0.03623175545521917
IGYLKLICL	9	Unmodified	_IGYLKLICL_					0	0	0		ANKAR|p.F321L|1|0.26|ENSG00000151687|chr2:189689886-189689886|T/C|missense_variant	ANKAR|p.F321L|1|0.26|ENSG00000151687|chr2:189689886-189689886|T/C|missense_variant	ANKAR|p.F321L|1|0.26|ENSG00000151687|chr2:189689886-189689886|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	518.317138671875	2	518.317189	1034.61982	0.16009	8.2978E-05	0.015778	8.1782E-06	0.17587	9.1156E-05	518.3171266326582	53.702	1.2379	53.513	52.501	53.739	-0.1894					32	23	3	0	0	0	0.7005	1	20562	20562		5.2307	5.2307	1	21526000			14809	130	8978	9028	14210	14210					0.10389922650097105
IHDNLMSVYK	10	Unmodified	_IHDNLMSVYK_					0	0	0		MLT1C_dup18222|chr19:17815788-17815900:+|3.4425711314560425|0.3136195045638514|3.46|481.0|6|1|anti-sense	MLT1C_dup18222|chr19:17815788-17815900:+|3.4425711314560425|0.3136195045638514|3.46|481.0|6|1|anti-sense	MLT1C_dup18222|chr19:17815788-17815900:+|3.4425711314560425|0.3136195045638514|3.46|481.0|6|1|anti-sense	MULTI-SECPEP	HCT116MG_D190212_S2	2	610.18408203125	2	610.310623	1218.60669	0.62579	0.00038192	0.51219	0.00031259	1.138	0.00069452	610.3110989263187	25.893	0.25955	25.524	25.343	25.602	-0.36914					6	4	2	0	0	0	0.3093	1	9360	9360		5.7319	0	1	8149700			14810	9332	8979	9029	14211	14211					0.00613439800076776
IHEQQLYK	8	Unmodified	_IHEQQLYK_					0	0	0			REV__ENSG00000165813|ENST00000369287|CCDC186	REV__ENSG00000165813|ENST00000369287|CCDC186	MSMS	HCT116MG_D190212_S2	2	529.7613525390625	2	529.785099	1057.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.059	1	32.848	32.348	33.348	-0.21135								0	0	0	0.70483	1	12253	12253		30.225	1.1432	1		+		14811	10115	8980	9030	14212	14212					0.029168588175252808
IHERPRKI	8	Unmodified	_IHERPRKI_					0	0	0		ENSG00000258436|ENST00000696784|RNASE12	ENSG00000258436|ENST00000696784|RNASE12	ENSG00000258436|ENST00000696784|RNASE12	MSMS	HCT116MG_D190212_S1	1	350.2171630859375	3	350.217325	1047.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.075	1	43.075	42.575	43.575	0								0	0	0	0.8837	1	16264	16264		4.3292	0	1				14812	6620	8981	9031	14213	14213					0.1082366641956014
IHFLPLMAKF	10	Unmodified	_IHFLPLMAKF_					0	0	0			REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	REV__CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	608.8485717773438	2	608.849187	1215.68382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.361	1	53.361	52.861	53.861	0								0	0	0	0.94107	1	20434	20434		6.7232	0	1		+		14813	10081	8982	9032	14214	14214					0.08460702807042253
IHGAFSTT	8	Unmodified	_IHGAFSTT_					0	0	0		sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;sp|F5HDQ6|DNBI_HCMVMMajorDNA-bindingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=DBPPE=3SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	MSMS	HCT116MG_D190212_S2	2	417.211181640625	2	417.211235	832.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.387	1	17.038	16.538	17.538	-0.34933								0	0	0	0.8396	1	5914	5914		19.439	0	1				14814	18197	8983	9033	14215	14215					-0.014990327164809969
IHGGSLGGLG	10	Unmodified	_IHGGSLGGLG_					0	0	0		ENST00000592804.1_1_19:804936-805922:+|nuORF	ENST00000592804.1_1_19:804936-805922:+|nuORF	ENST00000592804.1_1_19:804936-805922:+|nuORF	MSMS	HCT116MG_D190212_S4	4	434.2380676269531	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.607	1	60.341	59.841	60.841	-0.26582								0	0	0	0.97116	1	22841	22841		0	0	1				14815	9041	8984	9034	14216	14216					0.022443450662194664
IHIETIEI	8	Unmodified	_IHIETIEI_					0	0	0		TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	484.2756042480469	2	484.276575	966.538597	0.073564	3.5626E-05	2.4356	0.0011795	2.5092	0.0012151	484.27612534026196	47.979	0.35796	47.979	47.742	48.1	0					17	6	5	0	0	0	0.083541	1	18247	18247		98.807	16.943	1	34897000			14816	1320	8985	9035	14217	14217					0.05398938211715176
IHIETIEI	8	Unmodified	_IHIETIEI_					0	0	0		TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	484.2764587402344	2	484.276575	966.538597	0.24614	0.0001192	0.214	0.00010363	0.46013	0.00022283	484.27655065903446	48.274	0.26071	47.958	47.827	48.088	-0.31596					7	4	2	0	0	0	0.13911	1	18159	18159		86.121	4.2573	1	10019000			14817	1320	8985	9035	14218	14218					0.05398938211715176
IHIFLLVMLVA	11	Unmodified	_IHIFLLVMLVA_					0	0	0			REV__nc|ENSG00000014257|P15309-2|ACP3	REV__nc|ENSG00000014257|P15309-2|ACP3	MULTI-MSMS	HCT116MG_D190212_S1	1	423.5976257324219	3	423.598155	1267.77264	0.081516	3.453E-05	-1.1023	-0.00046693	-1.0208	-0.0004324	423.59758028731835	55.121	0.20344	55.121	54.994	55.197	0					6	3	2	0	0	0	0.74191	1	21182	21182		1.4551	0	1	139990000	+		14818	17066	8986	9036	14219	14219					0.14946118046714219
IHIFSKPFI	9	Unmodified	_IHIFSKPFI_					0	0	0			REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	REV__ENST00000522138.1_1_5:169064330-169108764:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	367.55267333984375	3	367.886694	1100.63825	-0.11433	-4.2062E-05	0.43832	0.00016125	0.32399	0.00011919	367.8868520343572	19.954	0.20919	19.954	19.809	20.018	0					5	3	2	0	0	0	0.26555	1	6966	6966		7.1017	0	1	3155600	+		14819	10400	8987	9037	14220	14220					0.09195800616316774
IHKDTLPA	8	Unmodified	_IHKDTLPA_					0	0	0			REV__NPC1|p.C799Lfs*7|1|0.36|ENSG00000141458|chr18:23541186-23541187|-/A|frameshift_variant	REV__NPC1|p.C799Lfs*7|1|0.36|ENSG00000141458|chr18:23541186-23541187|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	448.2322998046875	2	447.75581	893.497067	0.24293	0.00010878	0.17546	7.8563E-05	0.41839	0.00018734	447.7557466839726	37.681	0.26055	37.681	37.499	37.759	0					6	4	2	0	0	0	0.32122	1	14024	14024		7.9102	3.9658	1	3793500	+		14820	12334	8988	9038	14221	14221					0.046058022430429446
IHKTSNITY	9	Unmodified	_IHKTSNITY_					0	0	0			REV__sp|P16719|UL01_HCMVAGlycoproteinUL1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL1PE=3SV=1	REV__sp|P16719|UL01_HCMVAGlycoproteinUL1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL1PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.7905883789062	2	538.790381	1075.56621	0.4288	0.00023103	0.07854	4.2317E-05	0.50734	0.00027335	538.7903027317407	20.429	0.21267	20.05	19.917	20.13	-0.37949					8	3	3	0	0	0	0.51829	1	7168	7168		15.847	1.9411	1	11611000	+		14821	17569	8989	9039	14222	14222					0.03144841471953441
IHLEKRGKLN	10	Unmodified	_IHLEKRGKLN_					0	0	0		tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	604.3668212890625	2	604.367121	1206.71969	1.2724	0.000769	-1.3035	-0.0007878	-0.031109	-1.8802E-05	604.366195073674	55.584	0.57275	55.272	55.038	55.61	-0.312					15	10	2	0	0	0	0.88752	1	20841	20841		1.6526	0.17072	1	4242700			14822	18582	8990	9040	14223	14223					0.12459876308275852
IHLEKRGKLN	10	Unmodified	_IHLEKRGKLN_					0	0	0		tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	604.367121	1206.71969	0.73289	0.00044294	-0.8767	-0.00052985	-0.1438	-8.6911E-05	604.3665079274142	55.52	0.51361	55.334	55.021	55.535	-0.18565	0.031183	0.00010166	NaN	1.6526	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23098000			14823	18582	8990	9040							0.12459876308275852
IHLEKRGKLN	10	Unmodified	_IHLEKRGKLN_					0	0	0		tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	tr|U7T2S3|U7T2S3_FUSNUUncharacterizedAAAdomain-containingproteinycf46OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00396PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	604.367121	1206.71969	1.2724	0.000769	-1.3035	-0.0007878	-0.031109	-1.8802E-05	604.366195073674	55.584	0.57275	55.272	55.038	55.61	-0.312	-0.031183	-0.00041425	NaN	1.6526	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4242700			14824	18582	8990	9040							0.12459876308275852
IHLELIFV	8	Unmodified	_IHLELIFV_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|136|3|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|136|3|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|136|3|anti-sense	MSMS	HCT116MG_D190212_S4	4	492.3016662597656	2	492.299853	982.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.387	1	29.038	28.538	29.538	-0.34921								0	0	0	0.8837	1	10610	10610		10.183	3.8293	1				14825	9288	8991	9041	14224	14224					0.09316422833660454
IHLIKIEPK	9	Unmodified	_IHLIKIEPK_					0	0	0			REV__nc|ENSG00000175497|Q8N608-4|DPP10	REV__nc|ENSG00000175497|Q8N608-4|DPP10	MSMS	HCT116MG_D190212_S2	2	364.23681640625	3	364.237615	1089.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.977	1	15.642	15.142	16.142	-0.33451								0	0	0	0.76897	1	5346	5346		4.5289	0	1		+		14826	13518	8992	9042	14225	14225					0.14975758679133833
IHMFELLQN	9	Unmodified	_IHMFELLQN_					0	0	0			REV__PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	REV__PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	382.1970520019531	3	382.198831	1143.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.804	1	30.804	30.304	31.304	0								0	0	0	0.76862	1	11311	11311		5.7319	1.5423	1		+		14827	12250	8993	9043	14226	14226					0.008620721169563694
IHNFKNTW	8	Unmodified	_IHNFKNTW_					0	0	0		ENST00000381054.3_2_12:32115463-32123209:+|nuORF	ENST00000381054.3_2_12:32115463-32123209:+|nuORF	ENST00000381054.3_2_12:32115463-32123209:+|nuORF	MSMS	HCT116MG_D190212_S1	1	530.272705078125	2	530.272158	1058.52976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.265	1	32.265	31.765	32.765	0								0	0	0	0.8217	1	11900	11900		20.871	1.4322	1				14828	7570	8994	9044	14227	14227					0.0028400936589605408
IHQDTEML	8	Unmodified	_IHQDTEML_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MSMS	HCT116MG_D190212_S2	2	493.734619140625	2	493.734217	985.453881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.244	1	56.062	55.562	56.562	-0.18261								0	0	0	0.8837	1	21699	21699		13.508	0	1		+		14829	13414	8995	9045	14228	14228					-0.039427555965289685
IHQVKLPKM	9	Unmodified	_IHQVKLPKM_					0	0	0		ENST00000495414.5_1_3:143708513-143708657:+|nuORF	ENST00000495414.5_1_3:143708513-143708657:+|nuORF	ENST00000495414.5_1_3:143708513-143708657:+|nuORF	MSMS	HCT116MG_D190212_S3	3	547.3328247070312	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.239	1	62.008	61.508	62.508	-0.23129								0	0	0	0.7701	1	23772	23772		0.52476	0	1				14830	8379	8996	9046	14229	14229					0.10515245630199388
IHRKLKSVEVS	11	Unmodified	_IHRKLKSVEVS_					0	0	0			REV__nc|ENSG00000102974|P49711-2|CTCF	REV__nc|ENSG00000102974|P49711-2|CTCF	MULTI-MSMS	HCT116MG_D190212_S1	1	432.59783935546875	3	432.597983	1294.77212	0.091096	3.9408E-05	-0.87102	-0.0003768	-0.77992	-0.00033739	432.5975355222345	55.427	0.20442	55.427	55.298	55.503	0					9	3	4	0	0	0	0.74191	1	21297	21297		0.45452	0.046251	1	60357000	+		14831	10303	8997	9047	14230	14230					0.13652414651210165
IHRKLKSVEVS	11	Unmodified	_IHRKLKSVEVS_					0	0	0			REV__nc|ENSG00000102974|P49711-2|CTCF	REV__nc|ENSG00000102974|P49711-2|CTCF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	432.597983	1294.77212	0.091096	3.9408E-05	-0.87102	-0.0003768	-0.77992	-0.00033739	432.5975355222345	55.427	0.20442	55.427	55.298	55.503	0	0	0	NaN	0.45452	9	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60357000	+		14832	10303	8997	9047							0.13652414651210165
IHRLRKFYR	9	Unmodified	_IHRLRKFYR_					0	0	0		HS3ST4|p.K433R|1|0.28|ENSG00000182601|chr16:26136175-26136175|A/G|missense_variant	HS3ST4|p.K433R|1|0.28|ENSG00000182601|chr16:26136175-26136175|A/G|missense_variant	HS3ST4|p.K433R|1|0.28|ENSG00000182601|chr16:26136175-26136175|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	430.26458740234375	3	430.263157	1287.76764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.21	1	50.898	50.398	51.398	-0.31166								0	0	0	0.76967	1	19330	19330		1.0715	0.3738	1				14833	9228	8998	9048	14231	14231					0.135269950189695
IHRRFLATI	9	Unmodified	_IHRRFLATI_					0	0	0			REV__NAAA|p.A207T|1|0.12|ENSG00000138744|chr4:75925782-75925782|C/T|missense_variant	REV__NAAA|p.A207T|1|0.12|ENSG00000138744|chr4:75925782-75925782|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	563.8480834960938	2	563.845825	1125.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.471	1	45.099	44.599	45.599	-0.37266								0	0	0	0.76954	1	16775	16775		4.3292	0	1		+		14834	17057	8999	9049	14232	14232					0.11928525970711235
IHRRVHIRRVR	11	Unmodified	_IHRRVHIRRVR_					0	0	0			REV__ENST00000566842.5_1_16:29918195-29922616:-|nuORF	REV__ENST00000566842.5_1_16:29918195-29922616:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	749.4776611328125	2	749.476726	1496.9389	0.70958	0.00053181	0.12537	9.3963E-05	0.83495	0.00062578	749.4767781004107	60.957	2.6878	60.957	60.129	62.817	0					161	51	4	0	0	0	0.74191	1	23322	23322		0.26902	0.26902	1	89189000	+		14835	13498	9000	9050	14233	14233					0.21030745110124371
IHRTRRRPRR	10	Unmodified	_IHRTRRRPRR_					0	0	0			REV__ENST00000460782.1_1_X:153186222-153186584:-|nuORF	REV__ENST00000460782.1_1_X:153186222-153186584:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	702.4378662109375	2	702.437601	1402.86065	0.8651	0.00060768	0.046088	3.2374E-05	0.91119	0.00064005	702.4375620986036	54.561	0.25394	54.561	54.434	54.688	0					9	4	3	0	0	0	0.8806	1	20932	20932		6.2058	2.6093	1	111290000	+		14836	15774	9001	9051	14234	14234					0.17533312524892608
IHRTRRRPRR	10	Unmodified	_IHRTRRRPRR_					0	0	0			REV__ENST00000460782.1_1_X:153186222-153186584:-|nuORF	REV__ENST00000460782.1_1_X:153186222-153186584:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	702.438232421875	2	702.437601	1402.86065	0.82199	0.0005774	0.16523	0.00011607	0.98723	0.00069347	702.4375172782585	55.192	0.6125	55.004	54.765	55.377	-0.18797					31	11	4	0	0	0	0.87949	1	21291	21291		6.7232	4.8789	1	60627000	+		14837	15774	9001	9051	14235	14235					0.17533312524892608
IHRTRRRPRR	10	Unmodified	_IHRTRRRPRR_					0	0	0			REV__ENST00000460782.1_1_X:153186222-153186584:-|nuORF	REV__ENST00000460782.1_1_X:153186222-153186584:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	468.6274719238281	3	468.627493	1402.86065	0.21696	0.00010167	-0.31127	-0.00014587	-0.09431	-4.4196E-05	468.96165979162413	55.279	0.56023	55.091	54.765	55.325	-0.18797					23	10	3	0	0	0	0.89178	1	21305	21305		0.62683	0.17231	1	25355000	+		14838	15774	9001	9051	14236	14236					0.17533312524892608
IHTDPKESNFS	11	Unmodified	_IHTDPKESNFS_					0	0	0		ENST00000505524.1_1_5:36108630-36114563:-|nuORF;ENSG00000164187|ENST00000296603|LMBRD2	ENST00000505524.1_1_5:36108630-36114563:-|nuORF	ENST00000505524.1_1_5:36108630-36114563:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	638.3057861328125	2	637.804217	1273.59388	0.46952	0.00029946	0.03332	2.1252E-05	0.50284	0.00032071	638.3057923055461	40.194	0.72034	39.815	39.617	40.337	-0.37882					27	16	2	0	0	0	0.7093	1	14752	14752		18.373	1.8072	1	4366300			14839	4678	9002	9052	14237	14237					-0.031973000584684996
IHTIEEII	8	Unmodified	_IHTIEEII_					0	0	0		LRRC8D|p.R671H|1|0.11|ENSG00000171492|chr1:89935080-89935080|G/A|missense_variant	LRRC8D|p.R671H|1|0.11|ENSG00000171492|chr1:89935080-89935080|G/A|missense_variant	LRRC8D|p.R671H|1|0.11|ENSG00000171492|chr1:89935080-89935080|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	484.2763366699219	2	484.276575	966.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.06	1	47.927	47.427	48.427	-0.13281								0	0	0	0.38355	1	18349	18349		49.669	0	1				14840	9308	9003	9053	14238	14238					0.05398938211715176
IHVDVKEGT	9	Unmodified	_IHVDVKEGT_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2	MULTI-MSMS	HCT116MG_D190212_S1	1	499.2696228027344	2	499.269281	996.52401	0.52446	0.00026185	-0.19116	-9.544E-05	0.3333	0.00016641	499.2694398193121	28.139	0.312	28.139	27.956	28.268	0					7	5	2	0	0	0	0.57626	1	10269	10269		12.532	1.4171	1	5775800	+		14841	10989	9004	9054	14239	14239					0.025608660635725755
IHWESASLLR	10	Unmodified	_IHWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	HCT116MG_D190212_S1	1	606.330322265625	2	606.330205	1210.64586	0.36633	0.00022212	-0.048995	-2.9707E-05	0.31734	0.00019241	606.3301276929419	42.874	0.57138	42.874	42.588	43.16	0					15	10	3	0	0	0	8.8948E-17	1	16185	16185		241.96	188.13	1	45474000			14842	2901	9005	9055	14240	14240					0.04895908145931571
IHWESASLLR	10	Unmodified	_IHWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	HCT116MG_D190212_S1	1	404.5557556152344	3	404.555895	1210.64586	-0.18321	-7.4119E-05	-0.0022354	-9.0434E-07	-0.18545	-7.5024E-05	404.55589367736684	42.874	0.31287	42.874	42.69	43.003	0					11	5	3	0	0	0	0.00081686	1	16187	16187		142.92	109.1	1	34877000			14843	2901	9005	9055	14241	14241					0.04895908145931571
IHWESASLLR	10	Unmodified	_IHWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	HCT116MG_D190212_S2	2	606.332275390625	2	606.330205	1210.64586	0.79731	0.00048344	0.47731	0.00028941	1.2746	0.00077285	606.3312281135123	42.837	0.25738	42.767	42.637	42.895	-0.069984					6	4	2	0	0	0	0.14359	1	16256	16256		65.474	35.633	1	28694000			14844	2901	9005	9055	14242	14242					0.04895908145931571
IHWESASLLR	10	Unmodified	_IHWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	HCT116MG_D190212_S3	3	606.8314208984375	2	606.330205	1210.64586	0.59736	0.0003622	0.0065206	3.9536E-06	0.60388	0.00036615	606.3307279785832	43.114	0.15318	42.809	42.706	42.86	-0.30472					10	5	2	0	0	0	0.0034649	1	16070	16070		171.46	123.72	1	16706000			14845	2901	9005	9055	14243	14243					0.04895908145931571
IHWESASLLR	10	Unmodified	_IHWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	HCT116MG_D190212_S3	3	404.890380859375	3	404.555895	1210.64586	0.084559	3.4209E-05	-0.26071	-0.00010547	-0.17615	-7.1262E-05	404.5558085857336	43.069	0.1718	42.764	42.706	42.878	-0.30472					9	6	2	0	0	0	0.0066829	2	16075	16075;16084		128.58	94.757	1	8574100			14846	2901	9005	9055	14244;14245	14244					0.04895908145931571
IHWESASLLR	10	Unmodified	_IHWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	HCT116MG_D190212_S4	4	606.3306884765625	2	606.330205	1210.64586	1.0395	0.00063028	-0.16657	-0.000101	0.87293	0.00052928	606.3304202709298	43.229	0.24045	42.854	42.756	42.996	-0.37493					38	22	2	0	0	0	1.3017E-10	1	15877	15877		218.2	165.93	1	23632000			14847	2901	9005	9055	14246	14246					0.04895908145931571
IHWESASLLR	10	Unmodified	_IHWESASLLR_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MSMS	HCT116MG_D190212_S4	4	404.5558166503906	3	404.555895	1210.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.197	1	42.822	42.322	43.322	-0.37493								0	0	0	1.4154E-06	1	15883	15883		118.21	76.862	1				14848	2901	9005	9055	14247	14247					0.04895908145931571
IIAEKTKIP	9	Unmodified	_IIAEKTKIP_					0	0	0		CON__P02754	CON__P02754	CON__P02754	MULTI-MSMS	HCT116MG_D190212_S1	1	506.8236083984375	2	506.823692	1011.63283	0.40774	0.00020665	-0.37727	-0.00019121	0.030474	1.5445E-05	506.8235196837355	45.418	0.31147	45.418	45.244	45.555	0					10	5	3	0	0	0	0.14972	1	17217	17217		48.346	0	1	22258000		+	14849	553	9006	9056	14248	14248					0.1274807703384795
IIAKRRRIWKK	11	Unmodified	_IIAKRRRIWKK_					0	0	0		ENST00000355112.7_1_15:91293288-91298045:+|nuORF	ENST00000355112.7_1_15:91293288-91298045:+|nuORF	ENST00000355112.7_1_15:91293288-91298045:+|nuORF	MSMS	HCT116MG_D190212_S2	2	734.5418090820312	2	734.490979	1466.96741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.562	1	58.392	57.892	58.892	-0.1703								0	0	0	0.96208	1	22636	22636		0	0	1				14850	7287	9007	9057	14249	14249					0.2526004996670963
IICMARQS	8	Unmodified	_IICMARQS_					0	0	0		nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	MSMS	HCT116MG_D190212_S1	1	461.2358703613281	2	461.235873	920.457192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.678	1	48.678	48.178	49.178	0								0	0	0	0.8837	1	18529	18529		2.8892	0	1				14851	9560	9008	9058	14250	14250					-0.006217840235308358
IIDHHDNTY	9	Unmodified	_IIDHHDNTY_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	564.2593383789062	2	564.259445	1126.50434	0.30468	0.00017192	0.13515	7.6259E-05	0.43983	0.00024818	564.2593953384635	19.73	0.26139	19.73	19.6	19.861	0					10	4	3	0	0	0	0.0035933	1	6866	6866		176.84	122.06	1	22543000			14852	6105	9009	9059	14251	14251					-0.05385509947177525
IIDHHDNTY	9	Unmodified	_IIDHHDNTY_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant;FLNA|p.A1026Lfs*20|1|0.42|ENSG00000196924|chrX:154361439-154361439|C/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2596435546875	2	564.259445	1126.50434	0.38229	0.00021571	0.034363	1.939E-05	0.41665	0.0002351	564.2594535517215	20.357	0.26371	19.977	19.813	20.076	-0.37949					13	4	4	0	0	0	0.0012137	1	7120	7120		191.38	136.61	1	44093000			14853	6105	9009	9059	14252	14252					-0.05385509947177525
IIDNSQGFY	9	Unmodified	_IIDNSQGFY_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MSMS	HCT116MG_D190212_S2	2	1056.501220703125	1	1056.49965	1055.49238	0.79281	0.00083761	0.40995	0.00043311	1.2028	0.0012707	1056.4997183248556	41.592	0.30863	41.523	41.396	41.705	-0.068199					6	5	2	0	0	0	0.097615	1	15748	15748		58.679	10.93	1	16783000			14854	3326	9010	9060	14253	14253					-0.03315126690381476
IIDNSQGFY	9	Unmodified	_IIDNSQGFY_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MSMS	HCT116MG_D190212_S3	3	1056.50146484375	1	1056.49965	1055.49238	0.51578	0.00054493	0.22465	0.00023734	0.74044	0.00078227	1056.499891476723	41.837	0.22695	41.534	41.45	41.677	-0.30257					6	4	2	0	0	0	0.23138	1	15601	15601		37.974	1.847	1	4768100			14855	3326	9010	9060	14254	14254					-0.03315126690381476
IIDRHVSRY	9	Unmodified	_IIDRHVSRY_					0	0	0		ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19;ENST00000466409.1_1_9:95874378-95875386:+|nuORF	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	ENST00000468781.5_1_9:95858594-95875386:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	579.8228149414062	2	579.822547	1157.63054	0.46523	0.00026975	0.27855	0.00016151	0.74378	0.00043126	579.8225445227276	20.747	0.2101	20.368	20.236	20.446	-0.37949					5	3	2	0	0	0	0.39716	1	7287	7287		18.373	13.476	1	23549000			14856	4756	9011	9061	14255	14255					0.058030413487585975
IIEKIYKRWVL	11	Unmodified	_IIEKIYKRWVL_					0	0	0			REV__tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1	REV__tr|U7SFU1|U7SFU1_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02233PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	731.4552612304688	2	730.95303	1459.89151	1.0711	0.0007829	-0.16662	-0.00012179	0.90445	0.00066111	730.952701765878	57.722	0.36288	57.547	57.263	57.626	-0.17494					9	6	2	0	0	0	0.71532	1	22304	22304		16.149	10.417	1	27466000	+		14857	17662	9012	9062	14256	14256					0.1799560827591904
IIELRLKPLRK	11	Unmodified	_IIELRLKPLRK_					0	0	0			REV__ENST00000538021.5_2_11:72004413-72018253:-|nuORF	REV__ENST00000538021.5_2_11:72004413-72018253:-|nuORF	MSMS	HCT116MG_D190212_S2	2	460.3121337890625	3	460.313406	1377.91839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.529	1	41.461	40.961	41.961	-0.068199								0	0	0	0.96194	1	15695	15695		0.073264	0.0088572	1		+		14858	12871	9013	9063	14257	14257					0.2445471688708949
IIFKMKTLE	9	Unmodified	_IIFKMKTLE_					0	0	0		ENST00000382592.4_1_13:21620270-21635490:-|nuORF	ENST00000382592.4_1_13:21620270-21635490:-|nuORF	ENST00000382592.4_1_13:21620270-21635490:-|nuORF	MSMS	HCT116MG_D190212_S1	1	374.8918762207031	3	374.891227	1121.65185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.452	1	26.452	25.952	26.952	0								0	0	0	0.76592	1	9558	9558		15.248	1.3424	1				14859	7584	9014	9064	14258	14258					0.09589290333246936
IIFWVLSLP	9	Unmodified	_IIFWVLSLP_					0	0	0		SLC24A5|p.R305I|1|0.4|ENSG00000188467|chr15:48139011-48139011|G/T|missense_variant	SLC24A5|p.R305I|1|0.4|ENSG00000188467|chr15:48139011-48139011|G/T|missense_variant	SLC24A5|p.R305I|1|0.4|ENSG00000188467|chr15:48139011-48139011|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	544.3324584960938	2	544.331153	1086.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.148	1	57.148	56.648	57.648	0								0	0	0	0.7689	1	21985	21985		4.756	0	1				14860	18159	9015	9065	14259	14259					0.10789568901850544
IIGGGMAF	8	Unmodified	_IIGGGMAF_					0	0	0		ENST00000474281.1_1_X:77378368-77378476:+|nuORF;nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	ENST00000474281.1_1_X:77378368-77378476:+|nuORF	ENST00000474281.1_1_X:77378368-77378476:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	765.3967895507812	1	765.396373	764.389096	1.0273	0.00078626	-0.16021	-0.00012262	0.86705	0.00066364	765.3960383796891	51.684	0.41033	51.501	51.27	51.68	-0.18369					15	7	3	0	0	0	0.37531	2	19819	19819;19884		52.334	10.517	1	145090000			14861	1826	9016	9066	14260;14261	14260					-0.0025228561188441745
IIGGGMAF	8	Unmodified	_IIGGGMAF_					0	0	0		ENST00000474281.1_1_X:77378368-77378476:+|nuORF;nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	ENST00000474281.1_1_X:77378368-77378476:+|nuORF	ENST00000474281.1_1_X:77378368-77378476:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	765.397216796875	1	765.396373	764.389096	0.56456	0.00043211	0.057125	4.3723E-05	0.62169	0.00047584	765.3962015080061	51.877	0.30609	51.567	51.384	51.69	-0.30927					6	5	2	0	0	0	0.37531	1	19599	19599		52.334	10.517	1	14086000			14862	1826	9016	9066	14262	14262					-0.0025228561188441745
IIGNWLQNKKL	11	Unmodified	_IIGNWLQNKKL_					0	0	0			REV__MCTP2|p.L450Sfs*29|1|0.08|ENSG00000140563|chr15:94367650-94367651|-/AGTA|frameshift_variant	REV__MCTP2|p.L450Sfs*29|1|0.08|ENSG00000140563|chr15:94367650-94367651|-/AGTA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	663.900390625	2	663.898254	1325.78196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.253	1	56.974	56.474	57.474	-0.27913								0	0	0	0.94538	1	21753	21753		8.7454	2.0222	1		+		14863	12303	9017	9067	14263	14263					0.13209602656593233
IIHFIEMLKKR	11	Unmodified	_IIHFIEMLKKR_					0	0	0			REV__ENST00000472433.5_1_22:30184624-30209474:-|nuORF	REV__ENST00000472433.5_1_22:30184624-30209474:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	477.3170471191406	3	476.623364	1426.84826	0.18117	8.6349E-05	0.87006	0.00041469	1.0512	0.00050104	476.6236112537557	56.515	0.36039	56.515	56.326	56.686	0					15	6	3	0	0	0	0.36627	1	21719	21719		0.50596	0.41111	1	18551000	+		14864	9991	9018	9068	14264	14264					0.15191095226964535
IIHFIEMLKKR	11	Unmodified	_IIHFIEMLKKR_					0	0	0			REV__ENST00000472433.5_1_22:30184624-30209474:-|nuORF	REV__ENST00000472433.5_1_22:30184624-30209474:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	476.623364	1426.84826	0.32859	0.00015661	0.67799	0.00032315	1.0066	0.00047976	476.62359410855447	56.634	0.47652	56.452	56.312	56.788	-0.18261	-0.031865	-5.4913E-05	NaN	0.50596	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31103000	+		14865	9991	9018	9068							0.15191095226964535
IIIAVLMYL	9	Unmodified	_IIIAVLMYL_					0	0	0			REV__TRAM1L1|p.F85L|1|0.32|ENSG00000174599|chr4:117085139-117085139|G/T|missense_variant	REV__TRAM1L1|p.F85L|1|0.32|ENSG00000174599|chr4:117085139-117085139|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	526.333251953125	2	524.827389	1047.64023	0.40643	0.00021331	0.29162	0.00015305	0.69806	0.00036636	524.8274164639806	52.517	0.71891	52.517	52.28	52.999	0					40	13	5	0	0	0	0.7005	1	20190	20190		5.2307	0	1	748600000	+		14866	18013	9019	9069	14265	14265					0.11831093309933749
IIIAVLMYL	9	Unmodified	_IIIAVLMYL_					0	0	0			REV__TRAM1L1|p.F85L|1|0.32|ENSG00000174599|chr4:117085139-117085139|G/T|missense_variant	REV__TRAM1L1|p.F85L|1|0.32|ENSG00000174599|chr4:117085139-117085139|G/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	524.827389	1047.64023	0.40643	0.00021331	0.29162	0.00015305	0.69806	0.00036636	524.8274164639806	52.517	0.71891	52.517	52.28	52.999	0	0	0	NaN	5.2307	40	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748600000	+		14867	18013	9019	9069							0.11831093309933749
IIIPEIQKV	9	Unmodified	_IIIPEIQKV_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S1	1	526.83935546875	2	526.839342	1051.66413	0.2091	0.00011016	0.15336	8.0796E-05	0.36246	0.00019096	526.839066884812	48.721	0.4112	48.721	48.46	48.871	0					10	7	2	0	0	0	0.055677	1	18567	18567		71.922	2.8174	1	15146000			14868	2835	9020	9070	14266	14266					0.14036650067941991
IIKAKANLEK	10	Unmodified	_IIKAKANLEK_					0	0	0		ENSG00000197616|ENST00000405093|MYH6;ENSG00000092054|ENST00000355349|MYH7	ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MSMS	HCT116MG_D190212_S2	2	564.3589477539062	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.094	1	38.001	37.501	38.501	-0.09301								0	0	0	0.95892	1	14300	14300		2.7352	0.67545	1				14869	6161	9021	9071	14267	14267					0.14910839845219925
IIKDFMIQGG	10	Unmodified	_IIKDFMIQGG_					0	0	0		ENSG00000137168|ENST00000373699|PPIL1	ENSG00000137168|ENST00000373699|PPIL1	ENSG00000137168|ENST00000373699|PPIL1	MULTI-MSMS	HCT116MG_D190212_S2	2	561.3380737304688	2	561.30481	1120.59507	0.52215	0.00029308	-0.10301	-5.7823E-05	0.41913	0.00023526	561.3046870598436	51.837	0.4109	51.653	51.424	51.835	-0.18369					18	7	4	0	0	0	0.81435	1	19951	19951		10.824	2.0785	1	127450000			14870	3465	9022	9072	14268	14268					0.03959242776704741
IIKKIKLLKVF	11	Unmodified	_IIKKIKLLKVF_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	671.9801635742188	2	671.981059	1341.94756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.29	1	31.031	30.531	31.531	-0.25873								0	0	0	0.96141	1	11537	11537		0.35063	0.35063	1				14871	18431	9023	9073	14269	14269					0.29026861183388064
IIKLKKRIP	9	Unmodified	_IIKLKKRIP_					0	0	0			REV__ENSG00000121064|ENST00000262288|SCPEP1	REV__ENSG00000121064|ENST00000262288|SCPEP1	MSMS	HCT116MG_D190212_S1	1	370.2699890136719	3	370.269138	1107.78558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.592	1	25.592	25.092	26.092	0								0	0	0	0.7694	1	9212	9212		2.9952	1.8019	1		+		14872	11706	9024	9074	14270	14270					0.2360031722109852
IIKLLPTRRQT	11	Unmodified	_IIKLLPTRRQT_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MSMS	HCT116MG_D190212_S3	3	670.13916015625	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.533	1	45.222	44.722	45.722	-0.31094								0	0	0	0.86874	1	17051	17051		24.021	10.115	1				14873	1492	9025	9075	14271	14271					0.19529266956305946
IIKLLPTRRQT	11	Unmodified	_IIKLLPTRRQT_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MSMS	HCT116MG_D190212_S3	3	669.9351806640625	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.626	1	45.315	44.815	45.815	-0.31094								0	0	0	0.86874	1	17088	17088		24.021	10.115	1				14874	1492	9025	9075	14272	14272					0.19529266956305946
IIKRFIKRKL	10	Unmodified	_IIKRFIKRKL_					0	0	0		tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	tr|U7SZF5|U7SZF5_FUSNUDNAtopologymodulationproteinFlaROS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00732PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	657.9579467773438	2	657.958449	1313.90235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.988	1	41.988	41.488	42.488	0								0	0	0	0.96911	1	15825	15825		0.45834	0	1				14875	18526	9026	9076	14273	14273					0.2579505544088079
IIKYELPEVI	10	Unmodified	_IIKYELPEVI_					0	0	0		SLC38A4|p.N218Kfs*21|1|0.34|ENSG00000139209|chr12:46779784-46779785|-/T|frameshift_variant;ENSG00000139209|ENST00000266579|SLC38A4	SLC38A4|p.N218Kfs*21|1|0.34|ENSG00000139209|chr12:46779784-46779785|-/T|frameshift_variant	SLC38A4|p.N218Kfs*21|1|0.34|ENSG00000139209|chr12:46779784-46779785|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	406.24371337890625	3	406.244435	1215.71148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.725	1	46.614	46.114	47.114	-0.11121								0	0	0	0.91906	1	17805	17805		6.6304	0.43853	1				14876	3611	9027	9077	14274	14274					0.11224884548278169
IILILLYLF	9	Unmodified	_IILILLYLF_					0	0	0		tr|U7SZI7|U7SZI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00886PE=4SV=1	tr|U7SZI7|U7SZI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00886PE=4SV=1	tr|U7SZI7|U7SZI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00886PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	560.871826171875	2	560.872654	1119.73076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.778	1	13.778	13.278	14.278	0								0	0	0	0.77008	1	4485	4485		0.6015	0	1				14877	18532	9028	9078	14275	14275					0.17567885629819102
IILLIFRLIWR	11	Unmodified	_IILLIFRLIWR_					0	0	0		KCNU1|p.K54Nfs*25|1|0.44|ENSG00000215262|chr8:36784567-36784567|A/-|frameshift_variant;ENSG00000215262|ENST00000399881|KCNU1	KCNU1|p.K54Nfs*25|1|0.44|ENSG00000215262|chr8:36784567-36784567|A/-|frameshift_variant	KCNU1|p.K54Nfs*25|1|0.44|ENSG00000215262|chr8:36784567-36784567|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	728.481689453125	2	728.481757	1454.94896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.987	1	62.987	62.487	63.487	0								0	0	0	0.96208	1	24332	24332		0	0	1				14878	6448	9029	9079	14276	14276					0.23968495272151813
IILYNKKN	8	Unmodified	_IILYNKKN_					0	0	0		tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	503.30633544921875	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.029	1	57.74	57.24	58.24	-0.28879								0	0	0	0.8837	1	21798	21798		2.5775	0.27475	1				14879	18451	9030	9080	14277	14277					0.09974923719607887
IIMICILIA	9	Unmodified	_IIMICILIA_					0	0	0			REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant	REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	502.6907043457031	2	501.808142	1001.60173	0.50027	0.00025104	1.3467	0.00067577	1.8469	0.00092681	501.8088573193745	34.96	0.41449	34.801	34.657	35.072	-0.15834					13	7	2	0	0	0	0.54041	1	13100	13100		14.582	0.67564	1	16413000	+		14880	10134	9031	9081	14278	14278					0.10099464403754155
IIMKHRKKNRR	11	Unmodified	_IIMKHRKKNRR_					0	0	0		ENST00000438724.5_1_13:79918450-79918871:-|nuORF	ENST00000438724.5_1_13:79918450-79918871:-|nuORF	ENST00000438724.5_1_13:79918450-79918871:-|nuORF	MSMS	HCT116MG_D190212_S2	2	740.4640502929688	2	740.461896	1478.90924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.229	1	49.075	48.575	49.575	-0.15405								0	0	0	0.95581	1	18834	18834		3.2813	1.7994	1				14881	7901	9032	9082	14279	14279					0.18894045049773922
IIMVRLQRV	9	Unmodified	_IIMVRLQRV_					0	0	0		PNPLA6|p.S457Pfs*59|1|0.14|ENSG00000032444|chr19:7542644-7542644|G/-|frameshift_variant;PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6;PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;nc|ENSG00000130653|Q6ZV29-2|PNPLA7	PNPLA6|p.S457Pfs*59|1|0.14|ENSG00000032444|chr19:7542644-7542644|G/-|frameshift_variant;PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant	PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	564.2586669921875	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.788	1	53.788	53.288	54.288	0								0	0	0	0.76694	1	20608	20608		11.64	3.7301	1				14882	3091;969;9759	9033	9083	14280	14280					0.14258623412843008
IIPLRRVPVP	10	Unmodified	_IIPLRRVPVP_					0	0	0		ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	MSMS	HCT116MG_D190212_S1	1	387.2601318359375	3	387.260642	1158.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.848	1	27.848	27.348	28.348	0								0	0	0	0.96183	1	10122	10122		2.086	0	1				14883	2432	9034	9084	14281	14281					0.18706842698679793
IIPLRRVPVP	10	Unmodified	_IIPLRRVPVP_					0	0	0		ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	MSMS	HCT116MG_D190212_S2	2	387.2601013183594	3	387.260642	1158.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.209	1	27.879	27.379	28.379	-0.32987								0	0	0	0.96183	1	10280	10280		2.086	0	1				14884	2432	9034	9084	14282	14282					0.18706842698679793
IIPRRLRYRD	10	Unmodified	_IIPRRLRYRD_					0	0	0		ENST00000270747.7_1_1:16534695-16539049:-|nuORF	ENST00000270747.7_1_1:16534695-16539049:-|nuORF	ENST00000270747.7_1_1:16534695-16539049:-|nuORF	MSMS	HCT116MG_D190212_S2	2	679.4130859375	2	679.412395	1356.81024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.355	1	51.176	50.676	51.676	-0.17868								0	0	0	0.95351	1	19702	19702		3.9444	0.94915	1				14885	6921	9035	9085	14283	14283					0.1461034535655017
IIPVGKGG	8	Unmodified	_IIPVGKGG_					0	0	0		TGM1|p.S190T|1|0.51|ENSG00000092295|chr14:24260638-24260638|C/G|missense_variant;ENSG00000092295|ENST00000206765|TGM1	TGM1|p.S190T|1|0.51|ENSG00000092295|chr14:24260638-24260638|C/G|missense_variant	TGM1|p.S190T|1|0.51|ENSG00000092295|chr14:24260638-24260638|C/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	370.735595703125	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.967	1	44.594	44.094	45.094	-0.37326								0	0	0	0.8837	1	16572	16572		0.79363	0	1				14886	1580	9036	9086	14284	14284					0.07907336048231173
IIQELRRPKY	10	Unmodified	_IIQELRRPKY_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-SECPEP	HCT116MG_D190212_S2	2	658.797119140625	2	658.395879	1314.7772	0.59614	0.0003925	-2.2826	-0.0015029	-1.6865	-0.0011104	658.3942173390773	50.524	0.21053	50.352	50.245	50.456	-0.1719					5	3	2	0	0	0	0.30812	1	19356	19356		11.64	5.9084	1	7426100			14887	3425	9037	9087	14285	14285					0.13240718513839056
IIQQYLRARL	10	Unmodified	_IIQQYLRARL_					0	0	0			REV__ENST00000473492.1_1_13:41791330-41800639:-|nuORF	REV__ENST00000473492.1_1_13:41791330-41800639:-|nuORF	MSMS	HCT116MG_D190212_S3	3	637.3905639648438	2	637.390596	1272.76664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.107	1	61.876	61.376	62.376	-0.23129								0	0	0	0.96377	1	23719	23719		1.6526	0.17072	1		+		14888	15889	9038	9088	14286	14286					0.14116735859397522
IIRHKVKKGP	10	Unmodified	_IIRHKVKKGP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MSMS	HCT116MG_D190212_S2	2	587.969970703125	2	588.3904	1174.76625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.427	1	33.234	32.734	33.734	-0.19297								0	0	0	0.95351	1	12403	12403		3.9444	2.1002	1		+		14889	17171	9039	9089	14287	14287					0.1858536093022849
IIRRHVIKL	9	Unmodified	_IIRRHVIKL_					0	0	0			REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	MSMS	HCT116MG_D190212_S4	4	383.263916015625	3	383.264387	1146.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.87	1	57.58	57.08	58.08	-0.29061								0	0	0	0.76995	1	21734	21734		1.0715	0	1		+		14890	12068	9040	9090	14288	14288					0.20381664792830634
IISEMNQIY	9	Unmodified	_IISEMNQIY_					0	0	0		ENSG00000163535|ENST00000357799|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2	ENSG00000163535|ENST00000357799|SGO2	ENSG00000163535|ENST00000357799|SGO2	MSMS	HCT116MG_D190212_S2	2	556.2318725585938	2	555.778625	1109.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.467	1	31.218	30.718	31.718	-0.24883								0	0	0	0.42657	1	11609	11609		32.305	3.2239	1				14891	4608	9041	9091	14289	14289					-0.007693403568737267
IISNLDLNRNN	11	Unmodified	_IISNLDLNRNN_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000038253	REV__CON__ENSEMBL:ENSBTAP00000038253	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	429.233481	1284.67861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.01	1	24.73	24.23	25.23	-0.27958								0	0	0	0.95636	1	8841	8841		1.2148	0	1		+	+	14892	10254	9042	9092	14290	14290					0.047660704781492313
IISTDEGAFA	10	Unmodified	_IISTDEGAFA_					0	0	0		nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	MULTI-MSMS	HCT116MG_D190212_S4	4	512.2537231445312	2	512.253297	1022.49204	0.15592	7.9869E-05	0.74992	0.00038415	0.90583	0.00046402	512.2536456463565	34.653	0.974	34.267	33.932	34.906	-0.38558					38	18	3	0	0	0	0.64004	1	12624	12624		25.399	3.6527	1	6637000			14893	5191	9043	9093	14291	14291					-0.018305464102354563
IITSKKMKKM	10	Unmodified	_IITSKKMKKM_					0	0	0			REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	REV__tr|U7STE9|U7STE9_FUSNUD-3-phosphoglyceratedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01033PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	403.24664306640625	3	403.247017	1206.71922	-0.057069	-2.3013E-05	-0.53828	-0.00021706	-0.59534	-0.00024007	403.2466053276465	55.481	0.41089	55.295	55.072	55.483	-0.18565					13	7	3	0	0	0	0.87801	1	21423	21423		1.9064	0	1	14976000	+		14894	17795	9044	9094	14292	14292					0.12412997272554094
IIVKKLPYLP	10	Unmodified	_IIVKKLPYLP_					0	0	0		nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	MSMS	HCT116MG_D190212_S4	4	395.1805419921875	3	395.265282	1182.77402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.417	1	28.086	27.586	28.586	-0.33138								0	0	0	0.96769	1	10218	10218		0.77653	0.61721	1				14895	5892	9045	9095	14293	14293					0.18994075407113087
IIYFFFLRP	9	Unmodified	_IIYFFFLRP_					0	0	0			REV__ENST00000492715.1_1_X:48456623-48456752:+|nuORF	REV__ENST00000492715.1_1_X:48456623-48456752:+|nuORF	MSMS	HCT116MG_D190212_S3	3	608.3499755859375	2	608.349877	1214.6852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.38	1	36.08	35.58	36.58	-0.30058								0	0	0	0.7676	1	13440	13440		9.3474	1.4373	1		+		14896	16055	9046	9096	14294	14294					0.0864466016746519
IKADRFYKEVP	11	Unmodified	_IKADRFYKEVP_					0	0	0			REV__nc|ENSG00000196177|P45954-2|ACADSB	REV__nc|ENSG00000196177|P45954-2|ACADSB	MSMS	HCT116MG_D190212_S3	3	455.9214172363281	3	455.922355	1364.74524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.958	1	50.644	50.144	51.144	-0.31381								0	0	0	0.95017	1	19229	19229		6.2344	1.8282	1		+		14897	14008	9047	9097	14295	14295					0.07745306040033029
IKAGNVISRS	10	Unmodified	_IKAGNVISRS_					0	0	0		GBX1|p.S325I|1|0.28|ENSG00000164900|chr7:151148707-151148707|C/A|missense_variant	GBX1|p.S325I|1|0.28|ENSG00000164900|chr7:151148707-151148707|C/A|missense_variant	GBX1|p.S325I|1|0.28|ENSG00000164900|chr7:151148707-151148707|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	522.8119506835938	2	522.811648	1043.60874	0.52159	0.00027269	0.05916	3.093E-05	0.58075	0.00030362	522.81153935885	51.953	1.6992	51.769	51.013	52.712	-0.18368					79	32	4	0	0	0	0.87239	1	19759	19759		5.2969	0.066215	1	155010000			14898	9180	9048	9098	14296	14296					0.08868236600164892
IKAVVEKIMP	10	Unmodified	_IKAVVEKIMP_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1;SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant;SETBP1|p.G1249Efs*3|1|0.36|ENSG00000152217|chr18:44953080-44953080|A/-|frameshift_variant	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	564.3485717773438	2	564.346477	1126.6784	0.35086	0.00019801	3.4321	0.0019369	3.7829	0.0021349	564.348324137601	15.893	0.15655	15.559	15.48	15.637	-0.33451					4	2	2	0	0	0	0.71224	1	5341	5341		19.362	4.9566	1	4068500			14899	4138	9049	9099	14297	14297					0.12012979224573428
IKEAIPPSMS	10	Unmodified	_IKEAIPPSMS_					0	0	0			REV__SPTLC3|p.Q410K|1|0.24|ENSG00000172296|chr20:13126666-13126666|C/A|missense_variant	REV__SPTLC3|p.Q410K|1|0.24|ENSG00000172296|chr20:13126666-13126666|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	536.7874755859375	2	536.788992	1071.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.939	1	56.939	56.439	57.439	0								0	0	0	0.91638	1	21900	21900		12.241	3.4953	1		+		14900	17589	9050	9100	14298	14298					0.0305125002278146
IKECKGSPLV	10	Unmodified	_IKECKGSPLV_					0	0	0		APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	537.3057861328125	2	537.30481	1072.59507	0.54117	0.00029077	0.67255	0.00036136	1.2137	0.00065214	537.305313747536	54.866	0.30517	54.866	54.739	55.044	0					6	5	2	0	0	0	0.86862	1	21082	21082		6.2058	1.4498	1	65026000			14901	154	9051	9101	14299	14299					0.06167242776700732
IKEEYRKCEEE	11	Unmodified	_IKEEYRKCEEE_					0	0	0			REV__tr|U7STS7|U7STS7_FUSNUGlucosamine-6-phosphatedeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nagBPE=3SV=1	REV__tr|U7STS7|U7STS7_FUSNUGlucosamine-6-phosphatedeaminaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nagBPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	485.89752197265625	3	485.897658	1454.67114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.352	1	12.352	11.852	12.852	0								0	0	0	0.96208	1	3959	3959		0	0	1		+		14902	17809	9052	9102	14300	14300					-0.03800449904406378
IKEFPLLLDII	11	Unmodified	_IKEFPLLLDII_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant;CCDC168|p.A4132Qfs*29|1|0.23|ENSG00000175820|chr13:102738304-102738304|T/-|frameshift_variant;CCDC168|p.T4543Lfs*5|1|0.1|ENSG00000175820|chr13:102737070-102737070|T/-|frameshift_variant;CCDC168|p.G4714Rfs*2|1|0.22|ENSG00000175820|chr13:102736557-102736558|-/T|frameshift_variant;CCDC168|p.M5025Cfs*8|1|0.29|ENSG00000175820|chr13:102735624-102735624|T/-|frameshift_variant;CCDC168|p.L5048Ifs*6|1|0.12|ENSG00000175820|chr13:102735555-102735556|-/T|frameshift_variant;CCDC168|p.L5234*|1|0.12|ENSG00000175820|chr13:102735001-102735001|A/-|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	HCT116MG_D190212_S1	1	438.2730407714844	3	438.607485	1312.80063	0.078442	3.4405E-05	0.12043	5.2821E-05	0.19887	8.7226E-05	438.60751761658406	55.855	0.40935	55.855	55.658	56.067	0					12	7	2	0	0	0	0.36629	1	21530	21530		0.40827	0.40827	1	7619300			14903	5396	9053	9103	14301	14301					0.15673719507799433
IKEHRQLLYK	10	Unmodified	_IKEHRQLLYK_					0	0	0			REV__nc|ENSG00000163848|Q9UQR1-2|ZNF148	REV__nc|ENSG00000163848|Q9UQR1-2|ZNF148	MSMS	HCT116MG_D190212_S1	1	664.3975830078125	2	664.395879	1326.7772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.199	1	54.199	53.699	54.699	0								0	0	0	0.94746	1	20777	20777		5.2969	1.3525	1		+		14904	12888	9054	9104	14302	14302					0.12688718513823005
IKEIKIVPKPV	11	Unmodified	_IKEIKIVPKPV_					0	0	0			REV__ENSG00000117091|ENST00000368046|CD48	REV__ENSG00000117091|ENST00000368046|CD48	MSMS	HCT116MG_D190212_S1	1	632.4254760742188	2	632.423574	1262.83259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.146	1	52.146	51.646	52.646	0								0	0	0	0.9598	1	19938	19938		1.1933	0.12188	1		+		14905	11609	9055	9105	14303	14303					0.21169131981582723
IKEKRLRSLSR	11	Unmodified	_IKEKRLRSLSR_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MSMS	HCT116MG_D190212_S4	4	462.62677001953125	3	462.628165	1384.86267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.815	1	12.65	12.15	13.15	-0.16496								0	0	0	0.9619	1	3993	3993		0.094841	0	1				14906	4952	9056	9106	14304	14304					0.18562883699496524
IKELNSTVKRR	11	Unmodified	_IKELNSTVKRR_					0	0	0			REV__ZBTB41|p.K238Nfs*4|2|0.33|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant	REV__ZBTB41|p.K238Nfs*4|2|0.33|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	672.4087524414062	2	672.409518	1342.80448	0.82263	0.00055315	-1.1	-0.00073968	-0.27742	-0.00018654	672.408443784926	51.662	0.78624	51.35	50.805	51.591	-0.31166					26	14	2	0	0	0	0.74191	1	19448	19448		2.4985	0	1	6116300	+		14907	13584	9057	9107	14305	14305					0.14679202054207963
IKELPPKESRR	11	Unmodified	_IKELPPKESRR_					0	0	0			REV__ENSG00000117139|ENST00000367265|KDM5B	REV__ENSG00000117139|ENST00000367265|KDM5B	MSMS	HCT116MG_D190212_S1	1	676.9017333984375	2	676.904068	1351.79358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.759	1	52.759	52.259	53.259	0								0	0	0	0.95731	1	20188	20188		2.4985	1.169	1		+		14908	11610	9058	9108	14306	14306					0.1317579967992515
IKELTKKFKEK	11	Unmodified	_IKELTKKFKEK_					0	0	0			REV__ENSG00000100852|ENST00000345122|ARHGAP5	REV__ENSG00000100852|ENST00000345122|ARHGAP5	MSMS	HCT116MG_D190212_S1	1	696.4382934570312	2	696.43467	1390.85479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.613	1	47.613	47.113	48.113	0								0	0	0	0.9581	1	18096	18096		2.086	0.60411	1		+		14909	11104	9059	9109	14307	14307					0.17499311659366867
IKENMKFKEII	11	Unmodified	_IKENMKFKEII_					0	0	0			REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	REV__tr|U7T547|U7T547_FUSNUABCtransmembranetype-1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00435PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	696.9000244140625	2	696.899605	1391.78466	0.82755	0.00057672	-0.93285	-0.00065011	-0.1053	-7.3386E-05	696.8990340720825	52.788	1.0267	52.788	52.28	53.307	0					23	19	2	0	0	0	0.74191	1	20077	20077		4.897	1.9018	1	23262000	+		14910	17978	9060	9110	14308	14308					0.10443689999260641
IKESLEKIKK	10	Unmodified	_IKESLEKIKK_					0	0	0			REV__tr|U7T437|U7T437_FUSNUElp3/MiaA/NifB-likeradicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00242PE=4SV=1	REV__tr|U7T437|U7T437_FUSNUElp3/MiaA/NifB-likeradicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00242PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	608.2273559570312	2	608.387188	1214.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.228	1	43.921	43.421	44.421	-0.30759								0	0	0	0.95892	1	16527	16527		2.7352	0	1		+		14911	17962	9061	9111	14309	14309					0.16103378188176976
IKEVRTGKN	9	Unmodified	_IKEVRTGKN_					0	0	0		ENST00000460467.1_1_3:17051216-17052412:+|nuORF;PLCL2|p.E599Rfs*11|1|0.38|ENSG00000154822|chr3:17011137-17011137|A/-|frameshift_variant;PLCL2|p.D812*|1|0.26|ENSG00000154822|chr3:17011774-17011775|-/T|frameshift_variant;nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	ENST00000460467.1_1_3:17051216-17052412:+|nuORF	ENST00000460467.1_1_3:17051216-17052412:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	522.8119506835938	2	522.811648	1043.60874	0.52159	0.00027269	0.05916	3.093E-05	0.58075	0.00030362	522.81153935885	51.953	1.6992	51.769	51.013	52.712	-0.18368					79	32	4	0	0	0	0.64246	1	19985	19985		8.7454	8.7454	1	155010000			14912	4231	9062	9112	14310	14310					0.08868236600187629
IKGKVLFF	8	Unmodified	_IKGKVLFF_					0	0	0		ENST00000425688.1_1_2:166651406-166657756:+|nuORF	ENST00000425688.1_1_2:166651406-166657756:+|nuORF	ENST00000425688.1_1_2:166651406-166657756:+|nuORF	MSMS	HCT116MG_D190212_S1	1	476.306396484375	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.883	1	53.883	53.383	54.383	0								0	0	0	0.8837	1	20647	20647		2.8892	0	1				14913	7814	9063	9113	14311	14311					0.11805030558900853
IKIKAIKKTKP	11	Unmodified	_IKIKAIKKTKP_					0	0	0			REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	634.4446411132812	2	634.44484	1266.87513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.101	1	17.101	16.601	17.601	0								0	0	0	0.96003	1	5799	5799		1.0715	0.67075	1		+		14914	17663	9064	9114	14312	14312					0.25236527109814233
IKIKRFIKWV	10	Unmodified	_IKIKRFIKWV_					0	0	0			REV__HELLS|p.K156Rfs*27|1|0.04|ENSG00000119969|chr10:94571415-94571415|A/-|frameshift_variant	REV__HELLS|p.K156Rfs*27|1|0.04|ENSG00000119969|chr10:94571415-94571415|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	444.2953186035156	3	444.295576	1329.8649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.013	1	51.668	51.168	52.168	-0.34538								0	0	0	0.97045	1	19376	19376		0.15932	0	1		+		14915	16873	9065	9115	14313	14313					0.2131596417525543
IKKKIKKLVY	10	Unmodified	_IKKKIKKLVY_					0	0	0			REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	630.9429931640625	2	630.941934	1259.86931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.608	1	26.246	25.746	26.746	-0.36164								0	0	0	0.96937	1	9634	9634		0.40072	0.050084	1		+		14916	17916	9066	9116	14314	14314					0.24977428598162987
IKKKIKLLFK	10	Unmodified	_IKKKIKLLFK_					0	0	0			REV__GOLGB1|p.S1501Vfs*38|1|0.2|ENSG00000173230|chr3:121696007-121696007|T/-|frameshift_variant	REV__GOLGB1|p.S1501Vfs*38|1|0.2|ENSG00000173230|chr3:121696007-121696007|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	629.9507446289062	2	629.952301	1257.89005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.579	1	24.579	24.079	25.079	0								0	0	0	0.97116	1	8805	8805		0	0	1		+		14917	16852	9067	9117	14315	14315					0.2714201897779276
IKKKKKKKKGI	11	Unmodified	_IKKKKKKKKGI_					0	0	0			REV__ENST00000433510.2_1_17:46713761-46713989:-|nuORF	REV__ENST00000433510.2_1_17:46713761-46713989:-|nuORF	MSMS	HCT116MG_D190212_S1	1	442.9926452636719	3	442.993897	1325.95986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.41	1	13.41	12.91	13.91	0								0	0	0	0.96208	1	4355	4355		0	0	1		+		14918	15598	9068	9118	14316	14316					0.30991897646413236
IKKKKPKQ	8	Unmodified	_IKKKKPKQ_					0	0	0			REV__ENST00000252699.6_1_19:39220693-39220804:+|nuORF	REV__ENST00000252699.6_1_19:39220693-39220804:+|nuORF	MSMS	HCT116MG_D190212_S3	3	499.3477783203125	2	499.347669	996.680785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.436	1	58.166	57.666	58.666	-0.26932								0	0	0	0.8837	1	22230	22230		0.69038	0	1		+		14919	14588	9069	9119	14317	14317					0.18231195744556317
IKKLKPLLR	9	Unmodified	_IKKLKPLLR_					0	0	0			REV__MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	REV__MIS18BP1|p.V839Sfs*20|1|0.14|ENSG00000129534|chr14:45224073-45224073|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	370.26971435546875	3	370.269138	1107.78558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.807	1	43.729	43.229	44.229	-0.078373								0	0	0	0.77018	1	16621	16621		0.26902	0	1		+		14920	11894	9070	9120	14318	14318					0.2360031722109852
IKKNIWPRIQR	11	Unmodified	_IKKNIWPRIQR_					0	0	0			REV__RBM25|p.R770Q|1|0.07|ENSG00000119707|chr14:73112168-73112168|G/A|missense_variant	REV__RBM25|p.R770Q|1|0.07|ENSG00000119707|chr14:73112168-73112168|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	726.4506225585938	2	726.45152	1450.88849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.257	1	39.179	38.679	39.679	-0.077835								0	0	0	0.95196	1	14769	14769		5.2969	0	1		+		14921	17465	9071	9121	14319	14319					0.18107777941759196
IKKQAKKKK	9	Unmodified	_IKKQAKKKK_					0	0	0			REV__SFSWAP|p.H761Afs*23|1|0.09|ENSG00000061936|chr12:131778196-131778197|-/A|frameshift_variant	REV__SFSWAP|p.H761Afs*23|1|0.09|ENSG00000061936|chr12:131778196-131778197|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	550.38720703125	2	550.387326	1098.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.087	1	58.806	58.306	59.306	-0.28092								0	0	0	0.76995	1	22226	22226		0	0	1		+		14922	17513	9072	9122	14320	14320					0.21466842698669097
IKKVKMIFLRQ	11	Unmodified	_IKKVKMIFLRQ_					0	0	0			REV__ENST00000358715.3_2_5:162917489-162917540:+|nuORF	REV__ENST00000358715.3_2_5:162917489-162917540:+|nuORF	MSMS	HCT116MG_D190212_S3	3	468.63427734375	3	468.635492	1402.88465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.334	1	12.396	11.896	12.896	0.06246								0	0	0	0.9613	1	3839	3839		0.40827	0	1		+		14923	15062	9073	9123	14321	14321					0.19931972123686137
IKKVKRQEA	9	Unmodified	_IKKVKRQEA_					0	0	0			REV__ENST00000467329.5_1_1:150316853-150325452:+|nuORF	REV__ENST00000467329.5_1_1:150316853-150325452:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	550.3511352539062	2	550.35094	1098.68733	0.45806	0.0002521	0.36594	0.0002014	0.82401	0.00045349	550.8527785417608	60.598	0.35955	60.45	60.322	60.681	-0.14852					10	6	2	0	0	0	0.74917	1	23488	23488		1.8442	0	1	20056000	+		14924	11612	9074	9124	14322	14322					0.14193088905290097
IKKWHHIAWLL	11	Unmodified	_IKKWHHIAWLL_					0	0	0			REV__nc|ENSG00000121749|Q8TC07|TBC1D15	REV__nc|ENSG00000121749|Q8TC07|TBC1D15	MULTI-SECPEP	HCT116MG_D190212_S2	2	481.61767578125	3	482.290713	1443.85031	0.0534	2.5754E-05	0.54309	0.00026193	0.59649	0.00028768	482.290840895705	53.541	0.46304	53.351	53.069	53.532	-0.1894					10	8	2	0	0	0	0.36563	1	20505	20505		2.4348	0	1	9986900	+		14925	17115	9075	9125	14323	14323					0.146138920271369
IKLFVKPILSH	11	Unmodified	_IKLFVKPILSH_					0	0	0			REV__ENST00000540757.6_1_12:4714220-4719347:+|nuORF	REV__ENST00000540757.6_1_12:4714220-4719347:+|nuORF	MSMS	HCT116MG_D190212_S2	2	432.2798156738281	3	432.279703	1293.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.76	1	45.658	45.158	46.158	-0.1014								0	0	0	0.95307	1	17411	17411		4.7159	1.9807	1		+		14926	16364	9076	9126	14324	14324					0.18212265184433818
IKLPFLVM	8	Unmodified	_IKLPFLVM_					0	0	0		ENSG00000070761|ENST00000262498|CFAP20;ENST00000567092.1_1_16:58149929-58163019:-|nuORF;ENST00000562622.5_1_16:58149118-58163019:-|nuORF	ENSG00000070761|ENST00000262498|CFAP20	ENSG00000070761|ENST00000262498|CFAP20	MULTI-MSMS	HCT116MG_D190212_S4	4	960.5953369140625	1	960.595072	959.587796	0.55344	0.00053163	0.05407	5.194E-05	0.60751	0.00058357	960.5948974949099	51.838	1.0368	51.493	51.103	52.14	-0.34538					42	19	3	0	0	0	0.87576	1	19458	19458		0.79363	0	1	20962000			14927	1243	9077	9127	14325	14325					0.10638554966976699
IKMKKLKLKK	10	Unmodified	_IKMKKLKLKK_					0	0	0		ENST00000490863.5_1_1:54651905-54653456:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	MSMS	HCT116MG_D190212_S1	1	629.3689575195312	2	629.443786	1256.87302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.766	1	28.766	28.266	29.266	0								0	0	0	0.96377	1	10489	10489		1.6526	0	1				14928	7777	9078	9128	14326	14326					0.2548577510035557
IKMKKLKLKK	10	Unmodified	_IKMKKLKLKK_					0	0	0		ENST00000490863.5_1_1:54651905-54653456:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	MSMS	HCT116MG_D190212_S3	3	629.072265625	2	629.443786	1256.87302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.563	1	30.314	29.814	30.814	-0.24946								0	0	0	0.97116	1	11134	11134		0	0	1				14929	7777	9078	9128	14327	14327					0.2548577510035557
IKPKKLHFYLL	11	Unmodified	_IKPKKLHFYLL_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MSMS	HCT116MG_D190212_S2	2	467.77154541015625	3	467.298986	1398.87513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.662	1	55.476	54.976	55.976	-0.18565								0	0	0	0.95665	1	21461	21461		2.8433	0.21205	1		+		14930	13961	9079	9129	14328	14328					0.1916452710984231
IKPPRVRKLTR	11	Unmodified	_IKPPRVRKLTR_					0	0	0		ENSG00000095203|ENST00000374566|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	ENSG00000095203|ENST00000374566|EPB41L4B	MSMS	HCT116MG_D190212_S1	1	682.4542236328125	2	682.454062	1362.89357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.79	1	58.79	58.29	59.29	0								0	0	0	0.96157	1	22657	22657		0.26902	0.26902	1				14931	1605	9080	9130	14329	14329					0.22664081804373382
IKRARPRMG	9	Unmodified	_IKRARPRMG_					0	0	0			REV__nc|ENSG00000111799|Q99715-2|COL12A1	REV__nc|ENSG00000111799|Q99715-2|COL12A1	MSMS	HCT116MG_D190212_S4	4	362.22235107421875	3	362.222193	1083.64475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.158	1	54.84	54.34	55.34	-0.31774								0	0	0	0.76991	1	20645	20645		1.1933	0	1		+		14932	10222	9081	9131	14330	14330					0.10627415296039544
IKREEEYYRRE	11	Unmodified	_IKREEEYYRRE_					0	0	0			REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MSMS	HCT116MG_D190212_S2	2	785.89990234375	2	785.902254	1569.78995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.051	1	37.958	37.458	38.458	-0.09301								0	0	0	0.9581	1	14283	14283		2.086	0.60411	1		+		14933	10684	9082	9132	14331	14331					0.027850851153971234
IKRKRRKQ	8	Unmodified	_IKRKRRKQ_					0	0	0			REV__ENST00000475708.1_1_6:166782276-166782378:-|nuORF	REV__ENST00000475708.1_1_6:166782276-166782378:-|nuORF	MSMS	HCT116MG_D190212_S4	4	556.8795166015625	2	556.877991	1111.74143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.085	1	20.875	20.375	21.375	-0.20959								0	0	0	0.8837	1	7258	7258		2.3027	0.24298	1		+		14934	15909	9083	9133	14332	14332					0.19002725847508373
IKRYIYRKK	9	Unmodified	_IKRYIYRKK_					0	0	0			REV__ENSG00000148483|ENST00000377495|TMEM236	REV__ENSG00000148483|ENST00000377495|TMEM236	MSMS	HCT116MG_D190212_S1	1	423.2701110839844	3	423.27143	1266.79246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.715	1	22.715	22.215	23.215	0								0	0	0	0.76954	1	8056	8056		2.4985	0	1		+		14935	12547	9084	9134	14333	14333					0.1697363010166555
IKSTEKTSN	9	Unmodified	_IKSTEKTSN_					0	0	0			REV__ENSG00000169064|ENST00000675490|ZBBX	REV__ENSG00000169064|ENST00000675490|ZBBX	MULTI-MSMS	HCT116MG_D190212_S3	3	504.2724914550781	2	504.272021	1006.52949	0.25666	0.00012942	0.19645	9.9066E-05	0.45311	0.00022849	504.27212924471957	22.932	0.30025	22.913	22.751	23.051	-0.018869					9	5	3	0	0	0	0.17622	1	8081	8081		43.772	5.1576	1	5025700	+		14936	13220	9085	9135	14334	14334					0.026485448553785318
IKSTEKTSN	9	Unmodified	_IKSTEKTSN_					0	0	0			REV__ENSG00000169064|ENST00000675490|ZBBX	REV__ENSG00000169064|ENST00000675490|ZBBX	MULTI-MSMS	HCT116MG_D190212_S4	4	504.2728271484375	2	504.272021	1006.52949	0.079988	4.0336E-05	0.8876	0.00044759	0.96759	0.00048793	504.2724986969363	23.18	0.21102	22.932	22.8	23.011	-0.24775					6	3	2	0	0	0	0.17622	1	8108	8108		43.772	5.7984	1	4194700	+		14937	13220	9085	9135	14335	14335					0.026485448553785318
ILANKKPGRW	10	Unmodified	_ILANKKPGRW_					0	0	0			REV__ENSG00000095906|ENST00000262302|NUBP2	REV__ENSG00000095906|ENST00000262302|NUBP2	MSMS	HCT116MG_D190212_S2	2	591.8602905273438	2	591.858932	1181.70331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.117	1	51.932	51.432	52.432	-0.18515								0	0	0	0.93854	1	20013	20013		7.2892	1.0834	1		+		14938	11033	9086	9136	14336	14336					0.11972795142173709
ILAQEIHDV	9	Unmodified	_ILAQEIHDV_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B;CEP170B|p.A1303V|1|0.15|ENSG00000099814|chr14:104893005-104893005|C/T|missense_variant	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.1389770507812	2	519.284931	1036.55531	0.11051	5.7387E-05	0.565	0.00029339	0.67551	0.00035078	519.2853945617642	38.13	0.20674	38.037	37.908	38.115	-0.09301					5	3	2	0	0	0	0.25723	1	14286	14286		7.9102	2.1497	1	18492000			14939	1642	9087	9137	14337	14337					0.03849439097643881
ILAQEIHDV	9	Unmodified	_ILAQEIHDV_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B;CEP170B|p.A1303V|1|0.15|ENSG00000099814|chr14:104893005-104893005|C/T|missense_variant	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MATCH	HCT116MG_D190212_S1	1		2	519.284931	1036.55531	-0.33024	-0.00017149	0.49243	0.00025571	0.16219	8.4223E-05	519.2850452960647	38.097	0.2077	38.097	37.968	38.175	0	0.02988	-1.4069E-05	NaN	7.9102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7738400			14940	1642	9087	9137							0.03849439097643881
ILAQEIVKA	9	Unmodified	_ILAQEIVKA_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	HCT116MG_D190212_S2	2	492.8082275390625	2	492.808042	983.601532	0.49398	0.00024344	0.010013	4.9345E-06	0.50399	0.00024837	492.80791303258906	39.133	0.25794	39.055	38.916	39.174	-0.077835					9	4	3	0	0	0	0.011082	1	14739	14739		110.67	34.914	1	50746000			14941	3752	9088	9138	14338	14338					0.10907503999749224
ILAQEIVKA	9	Unmodified	_ILAQEIVKA_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	HCT116MG_D190212_S3	3	492.80828857421875	2	492.808042	983.601532	0.18745	9.2377E-05	0.35386	0.00017439	0.54131	0.00026676	492.80824696983524	39.362	0.21561	39.06	38.924	39.14	-0.30137					6	3	2	0	0	0	0.13316	1	14635	14635		51.63	11.68	1	6298100			14942	3752	9088	9138	14339	14339					0.10907503999749224
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;ENST00000376135.5_1_2:204193204-204247972:+|nuORF	nc|ENSG00000138443|Q9NYB9-3|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	MSMS	HCT116MG_D190212_S1	1	469.75091552734375	2	469.750724	937.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.615	1	39.615	39.115	40.115	0								0	0	0	0.46961	1	14866	14866		30.225	9.7712	1				14943	3561	9089	9139	14340	14340					0.015651945178206006
ILDDVSLTHL	10	Unmodified	_ILDDVSLTHL_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-SECPEP	HCT116MG_D190212_S1	1	563.3516235351562	2	563.311146	1124.60774	0.24876	0.00014013	0.43029	0.00024239	0.67905	0.00038251	563.8135442173356	51.272	0.2575	51.272	51.091	51.349	0					5	4	2	0	0	0	0.057866	1	19580	19580		99.799	28.665	1	5313300			14944	4903	9090	9140	14341	14341					0.050419774406236684
ILDDVSLTHL	10	Unmodified	_ILDDVSLTHL_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MSMS	HCT116MG_D190212_S2	2	563.3106689453125	2	563.311146	1124.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.512	1	51.328	50.828	51.828	-0.18369								0	0	0	0.050872	1	19766	19766		99.799	21.65	1				14945	4903	9090	9140	14342	14342					0.050419774406236684
ILDDVSLTHL	10	Unmodified	_ILDDVSLTHL_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	563.311146	1124.60774	0.38381	0.0002162	0.081956	4.6167E-05	0.46577	0.00026237	563.3111046487136	51.667	0.20952	51.356	51.172	51.382	-0.31166	0.041897	-7.1722E-05	NaN	99.799	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2734400			14946	4903	9090	9140							0.050419774406236684
ILDEAIYKV	9	Unmodified	_ILDEAIYKV_					0	0	0		ENSG00000166578|ENST00000416617|IQCD;nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD	ENSG00000166578|ENST00000416617|IQCD	ENSG00000166578|ENST00000416617|IQCD	MSMS	HCT116MG_D190212_S3	3	532.3052368164062	2	532.305332	1062.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.952	1	44.643	44.143	45.143	-0.30927								0	0	0	0.14112	1	16817	16817		51.63	15.503	1				14947	4867	9091	9141	14343	14343					0.06731780417271693
ILDEMSHKLRL	11	Unmodified	_ILDEMSHKLRL_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	HCT116MG_D190212_S2	2	452.2561950683594	3	452.255228	1353.74386	0.20162	9.1185E-05	0.87664	0.00039647	1.0783	0.00048765	452.2558794072855	41.439	0.20503	41.371	41.242	41.447	-0.068199					5	3	2	0	0	0	0.46599	1	15684	15684		49.159	26.144	1	29756000			14948	2547	9092	9142	14344	14344					0.08113348679626142
ILDERHDNY	9	Unmodified	_ILDERHDNY_					0	0	0		ENST00000522957.1_1_8:53536344-53555381:-|nuORF;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1	ENST00000522957.1_1_8:53536344-53555381:-|nuORF	ENST00000522957.1_1_8:53536344-53555381:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	587.7782592773438	2	587.778002	1173.54145	0.64871	0.0003813	0.11092	6.5196E-05	0.75963	0.00044649	587.7777202879128	24.027	0.26115	24.027	23.889	24.15	0					10	4	4	0	0	0	0.022505	1	8605	8605		93.938	47.917	1	10217000			14949	947	9093	9143	14345	14345					-0.038378384014322364
ILDERHDNY	9	Unmodified	_ILDERHDNY_					0	0	0		ENST00000522957.1_1_8:53536344-53555381:-|nuORF;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1	ENST00000522957.1_1_8:53536344-53555381:-|nuORF	ENST00000522957.1_1_8:53536344-53555381:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	587.7777709960938	2	587.778002	1173.54145	0.65797	0.00038674	-0.14496	-8.5205E-05	0.51301	0.00030154	587.7776880120645	24.541	0.26118	24.161	24.03	24.292	-0.38003					6	4	2	0	0	0	0.022505	1	8803	8803		93.938	57.432	1	31253000			14950	947	9093	9143	14346	14346					-0.038378384014322364
ILDEVIMGY	9	Unmodified	_ILDEVIMGY_					0	0	0		KIF11|p.T223Sfs*8|1|0.14|ENSG00000138160|chr10:92609477-92609478|-/TCCATTAG|frameshift_variant;KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant;ENSG00000138160|ENST00000260731|KIF11	KIF11|p.T223Sfs*8|1|0.14|ENSG00000138160|chr10:92609477-92609478|-/TCCATTAG|frameshift_variant	KIF11|p.T223Sfs*8|1|0.14|ENSG00000138160|chr10:92609477-92609478|-/TCCATTAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1053.168701171875	1	1052.53326	1051.52598	0.64522	0.00067912	0.1592	0.00016756	0.80442	0.00084668	1052.5332546570687	55.454	0.21217	55.162	55.031	55.243	-0.2918					5	3	2	0	0	0	0.065014	2	21018	21018;21063		67.344	22.937	1	2817200			14951	3536	9094	9144	14347;14348	14347					0.00228158757181518
ILDEVIMGY	9	Unmodified	_ILDEVIMGY_					0	0	0		KIF11|p.T223Sfs*8|1|0.14|ENSG00000138160|chr10:92609477-92609478|-/TCCATTAG|frameshift_variant;KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant;ENSG00000138160|ENST00000260731|KIF11	KIF11|p.T223Sfs*8|1|0.14|ENSG00000138160|chr10:92609477-92609478|-/TCCATTAG|frameshift_variant	KIF11|p.T223Sfs*8|1|0.14|ENSG00000138160|chr10:92609477-92609478|-/TCCATTAG|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1052.53326	1051.52598	0.89245	0.00093933	-0.58319	-0.00061383	0.30926	0.0003255	1052.532447969663	55.121	0.15289	55.121	54.994	55.146	0	-0.02908	-0.00056055	NaN	67.344	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27254000			14952	3536	9094	9144							0.00228158757181518
ILDEVIMGY	9	Unmodified	_ILDEVIMGY_					0	0	0		KIF11|p.T223Sfs*8|1|0.14|ENSG00000138160|chr10:92609477-92609478|-/TCCATTAG|frameshift_variant;KIF11|p.K673Rfs*3|1|0.12|ENSG00000138160|chr10:92637397-92637397|A/-|frameshift_variant;ENSG00000138160|ENST00000260731|KIF11	KIF11|p.T223Sfs*8|1|0.14|ENSG00000138160|chr10:92609477-92609478|-/TCCATTAG|frameshift_variant	KIF11|p.T223Sfs*8|1|0.14|ENSG00000138160|chr10:92609477-92609478|-/TCCATTAG|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1052.53326	1051.52598	0.65945	0.00069409	-0.012789	-1.346E-05	0.64666	0.00068063	1052.5332611045296	55.355	0.1525	55.168	55.071	55.223	-0.18703	0.017469	3.9822E-05	NaN	67.344	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15535000			14953	3536	9094	9144							0.00228158757181518
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S1	1	536.3423461914062	2	536.342249	1070.66995	0.44397	0.00023812	0.10588	5.6786E-05	0.54985	0.00029491	536.3422842126317	21.41	0.31593	21.41	21.226	21.542	0					15	5	4	0	0	0	0.0010417	1	7510	7510		192.32	81.646	1	301650000			14954	1617	9095	9145	14349	14349					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S1	1	357.89715576171875	3	357.897258	1070.66995	-0.0637	-2.2798E-05	0.062574	2.2395E-05	-0.0011252	-4.027E-07	357.8972170071056	21.383	0.31593	21.383	21.226	21.542	0					17	5	5	0	0	0	0.0201	1	7514	7514		79.427	12.744	1	168470000			14955	1617	9095	9145	14350	14350					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S1	1	1071.6787109375	1	1071.67722	1070.66995	0.72012	0.00077173	0.51964	0.00055688	1.2398	0.0013286	1071.678184829884	21.371	0.15827	21.371	21.279	21.437	0					4	2	2	0	0	0	0.0056292	1	7540	7540		132.13	44.876	1	4541700			14956	1617	9095	9145	14351	14351					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S2	2	536.3424072265625	2	536.342249	1070.66995	0.42608	0.00022852	-0.21337	-0.00011444	0.21271	0.00011408	536.3423014046223	21.994	0.62408	21.609	21.479	22.103	-0.38503					35	11	5	0	0	0	0.0010417	1	7770	7770		192.32	81.646	1	2742400000			14957	1617	9095	9145	14352	14352					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S2	2	357.8971862792969	3	357.897258	1070.66995	-0.20626	-7.3821E-05	-0.19305	-6.9091E-05	-0.39931	-0.00014291	357.89727559047583	21.994	0.52019	21.609	21.479	21.999	-0.38503					32	9	5	0	0	0	0.0201	1	7771	7771		79.427	12.744	1	1811799999.9999998			14958	1617	9095	9145	14353	14353					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S2	2	1071.677490234375	1	1071.67722	1070.66995	0.44934	0.00048154	-0.14486	-0.00015524	0.30448	0.0003263	1071.677002484663	21.994	0.31285	21.609	21.479	21.792	-0.38503					12	5	3	0	0	0	0.0037246	1	7791	7791		154.75	54.044	1	133020000			14959	1617	9095	9145	14354	14354					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	536.3424072265625	2	536.342249	1070.66995	0.33828	0.00018143	0.054711	2.9344E-05	0.39299	0.00021078	536.3422915542324	21.152	0.73589	21.177	20.965	21.701	0.02527					34	13	5	0	0	0	0.0034268	3	7345	7345;7387;7427		179.28	68.609	1	441190000			14960	1617	9095	9145	14355;14356;14357	14355					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	357.89715576171875	3	357.897258	1070.66995	-0.22291	-7.9778E-05	0.0091731	3.283E-06	-0.21374	-7.6495E-05	357.8972988573609	21.152	0.6298	21.177	20.965	21.595	0.025246					31	11	5	0	0	0	0.0201	1	7346	7346		79.427	12.744	1	443400000			14961	1617	9095	9145	14358	14358					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	1071.676513671875	1	1071.67722	1070.66995	0.37624	0.00040321	-0.5092	-0.0005457	-0.13296	-0.00014249	1071.6765408812885	21.174	0.20811	21.193	21.063	21.271	0.018446					5	3	2	0	0	0	0.040372	1	7393	7393		79.427	26.11	1	4064800			14962	1617	9095	9145	14359	14359					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S4	4	357.89697265625	3	357.897258	1070.66995	-0.0067217	-2.4057E-06	-0.13817	-4.9452E-05	-0.1449	-5.1858E-05	357.89716169431483	21.515	0.41523	21.296	21.114	21.529	-0.21832					20	7	4	0	0	0	0.0201	1	7421	7421		79.427	12.744	1	144370000			14963	1617	9095	9145	14360	14360					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S4	4	536.343017578125	2	536.342249	1070.66995	0.46193	0.00024775	-0.028741	-1.5415E-05	0.43319	0.00023234	536.3422060572676	21.515	0.62308	21.296	21.114	21.737	-0.21832					27	11	4	0	0	0	0.0034966	2	7423	7423;7455		166.77	69.834	1	237610000			14964	1617	9095	9145	14361;14362	14361					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S4	4	1071.678466796875	1	1071.67722	1070.66995	0.59596	0.00063868	0.54492	0.00058398	1.1409	0.0012227	1071.6777282710184	21.515	0.20765	21.296	21.166	21.374	-0.21832					5	3	2	0	0	0	0.012343	1	7459	7459		107.56	38.225	1	2941700			14965	1617	9095	9145	14363	14363					0.1374374857962266
ILDNSINFLE	10	Unmodified	_ILDNSINFLE_					0	0	0		tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	tr|U7SJ33|U7SJ33_FUSNUHTHaraC/xylS-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02075PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	589.3273315429688	2	589.308603	1176.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.078	1	36.777	36.277	37.277	-0.30128								0	0	0	0.91279	1	13722	13722		13.042	0	1				14966	18310	9096	9146	14364	14364					0.0214167357801216
ILDNYLFIV	9	Unmodified	_ILDNYLFIV_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-MSMS	HCT116MG_D190212_S2	2	555.315673828125	2	555.3157	1108.61685	0.28829	0.00016009	-0.036656	-2.0356E-05	0.25164	0.00013974	555.3156511567232	22.013	0.20839	21.628	21.531	21.739	-0.38503					5	3	2	0	0	0	0.15273	1	7797	7797		47.749	3.8904	1	25904000			14967	1487	9097	9147	14365	14365					0.06688370796928211
ILDPEDPGAP	10	Unmodified	_ILDPEDPGAP_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2538452148438	2	512.253297	1022.49204	0.058038	2.973E-05	0.24377	0.00012487	0.30181	0.0001546	512.2536868747715	34.602	1.0907	34.305	33.816	34.907	-0.29707					55	20	4	0	0	0	0.61891	2	12646	12646;12882		26.884	1.4843	1	26927000			14968	6635	9098	9148	14366;14367	14366					-0.018305464102354563
ILDPEDPGAP	10	Unmodified	_ILDPEDPGAP_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-MSMS	HCT116MG_D190212_S4	4	512.2539672851562	2	512.253297	1022.49204	0.15592	7.9869E-05	0.74992	0.00038415	0.90583	0.00046402	512.2536456463565	34.653	0.974	34.267	33.932	34.906	-0.38558					38	18	3	0	0	0	0.80458	1	12861	12861		11.64	1.5664	1	6637000			14969	6635	9098	9148	14368	14368					-0.018305464102354563
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	HCT116MG_D190212_S2	2	509.8186950683594	2	509.81841	1017.62227	0.31128	0.0001587	1.5124	0.00077107	1.8237	0.00092977	509.8185596668659	55.034	0.30505	54.846	54.714	55.019	-0.18797					16	5	5	0	0	0	0.071351	1	21225	21225		64.236	18.486	1	106670000			14970	2167	9099	9149	14369	14369					0.11416094379421793
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S1	1	536.3062744140625	2	536.305864	1070.59717	0.49834	0.00026726	0.35466	0.00019021	0.85301	0.00045747	536.3060193590416	34.727	0.36344	34.727	34.545	34.909	0					14	6	3	0	0	0	0.0035136	1	12896	12896		168.54	64.789	1	98984000			14971	2484	9100	9150	14370	14370					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S2	2	536.3060913085938	2	536.305864	1070.59717	0.61588	0.0003303	-0.3051	-0.00016363	0.31078	0.00016667	536.3056423512828	34.796	0.51804	34.637	34.45	34.968	-0.15834					20	9	3	0	0	0	0.0029864	1	12957	12957		181.69	71.016	1	608120000			14972	2484	9100	9150	14371	14371					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S2	2	1071.6044921875	1	1071.60445	1070.59717	0.64852	0.00069496	-0.81408	-0.00087237	-0.16556	-0.00017741	1071.6037468335817	34.79	0.25937	34.631	34.502	34.761	-0.15834					7	4	2	0	0	0	8.7331E-05	1	12980	12980		201.57	83.5	1	41602000			14973	2484	9100	9150	14372	14372					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S3	3	536.3060913085938	2	536.305864	1070.59717	0.44808	0.00024031	0.03569	1.9141E-05	0.48377	0.00025945	536.3058276174276	35.023	0.46717	34.726	34.492	34.959	-0.29707					23	8	4	0	0	0	0.0035894	1	12914	12914		176.43	61.778	1	110190000			14974	2484	9100	9150	14373	14373					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S4	4	536.30615234375	2	536.305864	1070.59717	0.47247	0.00025339	0.20671	0.00011086	0.67917	0.00036425	536.3060364191687	35.11	0.36311	34.724	34.49	34.853	-0.38606					14	6	3	0	0	0	0.0045072	1	12847	12847		143.21	39.465	1	31388000			14975	2484	9100	9150	14374	14374					0.06469994786175448
ILEAFGGF	8	Unmodified	_ILEAFGGF_					0	0	0		SLC7A6|p.Q492Sfs*8|1|0.23|ENSG00000103064|chr16:68297252-68297252|C/-|frameshift_variant;ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6	SLC7A6|p.Q492Sfs*8|1|0.23|ENSG00000103064|chr16:68297252-68297252|C/-|frameshift_variant	SLC7A6|p.Q492Sfs*8|1|0.23|ENSG00000103064|chr16:68297252-68297252|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	853.4458618164062	1	853.445431	852.438155	0.80914	0.00069056	-0.061191	-5.2223E-05	0.74795	0.00063833	853.4451197508579	57.516	0.20755	57.341	57.211	57.418	-0.17494					5	3	2	0	0	0	0.77285	1	22238	22238		14.582	1.0738	1	27066000			14976	1873	9101	9151	14375	14375					0.006033259487253417
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S1	1	362.5690002441406	3	362.569142	1084.6856	-0.039482	-1.4315E-05	-0.080447	-2.9168E-05	-0.11993	-4.3482E-05	362.569046256634	20.201	0.26101	20.201	20.07	20.331	0					9	4	3	0	0	0	0.035298	1	7070	7070		81.915	30.427	1	16400000			14977	1401	9102	9152	14376	14376					0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S1	1	543.3502807617188	2	543.350074	1084.6856	0.57083	0.00031016	0.33623	0.00018269	0.90706	0.00049285	543.3499703053858	20.201	0.20884	20.201	20.07	20.279	0					7	3	3	0	0	0	0.043047	1	7071	7071		83.278	35.529	1	20456000			14978	1401	9102	9152	14377	14377					0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S2	2	543.3505249023438	2	543.350074	1084.6856	0.48542	0.00026375	-0.017195	-9.3427E-06	0.46823	0.00025441	543.3499530163291	20.955	0.26004	20.572	20.443	20.703	-0.38288					15	4	5	0	0	0	0.0055798	1	7362	7362		154.75	60.814	1	109270000			14979	1401	9102	9152	14378	14378					0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S2	2	362.5689697265625	3	362.569142	1084.6856	-0.19633	-7.1184E-05	-0.072659	-2.6344E-05	-0.26899	-9.7527E-05	362.56905874347	20.955	0.26004	20.572	20.443	20.703	-0.38288					11	4	4	0	0	0	0.043159	1	7371	7371		78.06	28.319	1	86157000			14980	1401	9102	9152	14379	14379					0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S3	3	362.5689392089844	3	362.569142	1084.6856	-0.12847	-4.6578E-05	-0.073586	-2.668E-05	-0.20205	-7.3259E-05	362.56903611839755	19.873	0.2606	19.921	19.791	20.051	0.048107					7	4	2	0	0	0	0.029121	1	6843	6843		87.258	35.77	1	12792000			14981	1401	9102	9152	14380	14380					0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S3	3	543.3509521484375	2	543.350074	1084.6856	0.4129	0.00022435	0.15023	8.1627E-05	0.56312	0.00030597	543.35013195101	19.873	0.20848	19.921	19.791	19.999	0.048107					8	3	3	0	0	0	0.025451	1	6845	6845		107.56	44.336	1	8271300			14982	1401	9102	9152	14381	14381					0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	HCT116MG_D190212_S4	4	543.851806640625	2	543.350074	1084.6856	0.49833	0.00027077	-0.064371	-3.4976E-05	0.43396	0.00023579	543.8516277378046	20.32	0.20786	20.118	19.988	20.196	-0.20133					5	3	2	0	0	0	0.14863	1	6972	6972		44.392	18.371	1	4190600			14983	1401	9102	9152	14382	14382					0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	362.569142	1084.6856	-0.0023717	-8.599E-07	-0.41798	-0.00015155	-0.42035	-0.00015241	362.56893206184594	20.32	0.15592	20.118	20.04	20.196	-0.20133	0.098697	-0.0003043	NaN	87.258	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2346200			14984	1401	9102	9152							0.14664035096643602
ILELRRNARE	10	Unmodified	_ILELRRNARE_					0	0	0		tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	635.45166015625	2	635.372935	1268.73132	0.62352	0.00039617	-0.52796	-0.00033545	0.095561	6.0717E-05	635.3726269707805	52.334	1.3904	52.147	51.369	52.76	-0.18725					61	26	3	0	0	0	0.31123	1	20210	20210		1.4819	1.4819	1	20954000			14985	18644	9103	9153	14383	14383					0.10770073331582353
ILEVKNLTALN	11	Unmodified	_ILEVKNLTALN_					0	0	0		tr|U7STY4|U7STY4_FUSNURibose/galactose/methylgalactosideimportATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01610PE=3SV=1	tr|U7STY4|U7STY4_FUSNURibose/galactose/methylgalactosideimportATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01610PE=3SV=1	tr|U7STY4|U7STY4_FUSNURibose/galactose/methylgalactosideimportATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01610PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	614.3688354492188	2	614.368995	1226.72344	0.38132	0.00023427	0.037094	2.2789E-05	0.41841	0.00025706	614.3688354714056	54.239	0.30854	54.05	53.842	54.15	-0.1894					10	5	3	0	0	0	0.70991	1	20891	20891		18.146	2.2992	1	19264000			14986	18458	9104	9154	14384	14384					0.11914501291471424
ILFATEAGVV	10	Unmodified	_ILFATEAGVV_					0	0	0			REV__nc|ENSG00000266200|P54317|PNLIPRP2	REV__nc|ENSG00000266200|P54317|PNLIPRP2	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.8038330078125	2	510.292225	1018.5699	0.50255	0.00025645	0.01862	9.5015E-06	0.52117	0.00026595	510.2921761701923	44.905	0.25903	44.82	44.639	44.899	-0.084797					6	4	2	0	0	0	0.28843	1	17062	17062		24.021	24.021	1	7861200	+		14987	17315	9105	9155	14385	14385					0.06135511245804537
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S1	1	543.300537109375	2	542.79854	1083.58253	0.58405	0.00031702	0.28883	0.00015678	0.87288	0.0004738	543.3001829257731	33.575	0.25919	33.575	33.4	33.659	0					10	4	3	0	0	0	0.011082	1	12436	12436		110.67	68.857	1	13189000			14988	1226	9106	9156	14386	14386					0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MSMS	HCT116MG_D190212_S1	1	362.2013854980469	3	362.201452	1083.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.645	1	33.645	33.145	34.145	0								0	0	0	0.57787	1	12458	12458		18.721	9.1773	1				14989	1226	9106	9156	14387	14387					0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S2	2	543.28515625	2	542.79854	1083.58253	0.56273	0.00030545	0.10011	5.4337E-05	0.66284	0.00035979	542.7984916316531	33.858	0.41618	33.665	33.43	33.847	-0.19297					16	7	3	0	0	0	0.0053819	2	12575	12575;12582		134.3	93.076	1	48896000			14990	1226	9106	9156	14388;14389	14388					0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S2	2	362.20159912109375	3	362.201452	1083.58253	-0.12384	-4.4856E-05	-0.092012	-3.3327E-05	-0.21586	-7.8183E-05	362.2013920982728	33.858	0.36419	33.665	33.482	33.847	-0.19297					13	6	3	0	0	0	0.016701	1	12579	12579		80.676	50.835	1	41855000			14991	1226	9106	9156	14390	14390					0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	542.79854	1083.58253	0.48181	0.00026152	-0.09155	-4.9693E-05	0.39026	0.00021183	542.7985920566532	33.983	0.20835	33.689	33.559	33.767	-0.29419	0.046203	-0.00032018	NaN	134.3	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4778100			14992	1226	9106	9156							0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;GNB5|p.T372N|1|0.05|ENSG00000069966|chr15:52124534-52124534|G/T|missense_variant	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MATCH	HCT116MG_D190212_S3	3		3	362.201452	1083.58253	-0.062283	-2.2559E-05	-0.081975	-2.9692E-05	-0.14426	-5.2251E-05	362.53578641051774	34.008	0.26045	33.713	33.559	33.819	-0.2942	0.024306	7.3506E-06	NaN	80.676	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3972000			14993	1226	9106	9156							0.04407967428710435
ILFKRFWWRHY	11	Unmodified	_ILFKRFWWRHY_					0	0	0		ENST00000354179.8_2_5:176671236-176673694:+|nuORF	ENST00000354179.8_2_5:176671236-176673694:+|nuORF	ENST00000354179.8_2_5:176671236-176673694:+|nuORF	MSMS	HCT116MG_D190212_S2	2	826.4575805664062	2	826.454062	1650.89357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.409	1	28.079	27.579	28.579	-0.32987								0	0	0	0.9619	1	10361	10361		0	0	1				14994	7281	9107	9157	14391	14391					0.09416081804397436
ILFRRAVLRRL	11	Unmodified	_ILFRRAVLRRL_					0	0	0		ENSG00000006638|ENST00000375190|TBXA2R;nc|ENSG00000006638|P21731-2|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	MSMS	HCT116MG_D190212_S1	1	706.9697875976562	2	706.96988	1411.92521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.815	1	52.815	52.315	53.315	0								0	0	0	0.95113	1	20211	20211		5.7319	4.5385	1				14995	833	9108	9158	14392	14392					0.23572074558342138
ILFVVKPIGE	10	Unmodified	_ILFVVKPIGE_					0	0	0			REV__ENSG00000148795|ENST00000369887|CYP17A1	REV__ENSG00000148795|ENST00000369887|CYP17A1	MSMS	HCT116MG_D190212_S1	1	557.846923828125	2	557.847167	1113.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.918	1	8.918	8.418	9.418	0								0	0	0	0.96937	1	2697	2697		0.40072	0	1		+		14996	12554	9109	9159	14393	14393					0.12748936585012416
ILGDQNMDF	9	Unmodified	_ILGDQNMDF_					0	0	0			REV__nc|ENSG00000128595|O43852-7|CALU	REV__nc|ENSG00000128595|O43852-7|CALU	MSMS	HCT116MG_D190212_S3	3	526.738037109375	2	526.739499	1051.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.383	1	57.104	56.604	57.604	-0.27913								0	0	0	0.76834	1	21806	21806		6.7232	0.36906	1		+		14997	17123	9110	9160	14394	14394					-0.059227729421081676
ILHENFTTV	9	Unmodified	_ILHENFTTV_					0	0	0		ENST00000565532.5_1_16:66762088-66770076:-|nuORF;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	537.285400390625	2	537.284931	1072.55531	0.2349	0.00012621	0.12588	6.7635E-05	0.36079	0.00019385	537.2848802322077	39.631	0.20887	39.631	39.501	39.709	0					5	3	2	0	0	0	0.11023	1	14883	14883		56.177	14.082	1	7500900			14998	3369	9111	9161	14395	14395					0.021934390976412033
ILHENFTTV	9	Unmodified	_ILHENFTTV_					0	0	0		ENST00000565532.5_1_16:66762088-66770076:-|nuORF;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	537.284931	1072.55531	0.3611	0.00019401	0.070508	3.7883E-05	0.4316	0.00023189	537.2848341264629	39.649	0.20559	39.572	39.477	39.682	-0.077839	-0.029813	-2.8394E-05	NaN	56.177	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12281000			14999	3369	9111	9161							0.021934390976412033
ILHHGGDP	8	Unmodified	_ILHHGGDP_					0	0	0			REV__ENST00000435515.5_1_2:40450804-40481654:+|nuORF	REV__ENST00000435515.5_1_2:40450804-40481654:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	423.21661376953125	2	423.216852	844.419151	0.043089	1.8236E-05	0.31445	0.00013308	0.35754	0.00015132	423.2168729257208	22.577	0.31217	22.559	22.439	22.751	-0.018869					7	5	2	0	0	0	0.73076	1	7944	7944		19.439	19.439	1	5361300	+		15000	15619	9112	9162	14396	14396					-0.009282106223395203
ILHKLEQDTL	10	Unmodified	_ILHKLEQDTL_					0	0	0			REV__nc|ENSG00000143437|P27540-4|ARNT	REV__nc|ENSG00000143437|P27540-4|ARNT	MSMS	HCT116MG_D190212_S1	1	605.3474731445312	2	605.34552	1208.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.307	1	51.307	50.807	51.807	0								0	0	0	0.94551	1	19599	19599		5.7319	0.43497	1		+		15001	17153	9113	9163	14397	14397					0.08049641740331026
ILHRCHCCUS	10	Unmodified	_ILHRCHCCUS_					0	0	0			REV__ENSG00000250722|ENST00000514985|SELENOP	REV__ENSG00000250722|ENST00000514985|SELENOP	MSMS	HCT116MG_D190212_S1	1	408.1439514160156	3	408.144225	1221.41084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.873	1	63.873	63.373	64.373	0								0	0	0	0.97116	1	24667	24667		0	0	0		+		15002	14381	9114	9164	14398	14398					-0.1910041575224568
ILHSIFSSY	9	Unmodified	_ILHSIFSSY_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MSMS	HCT116MG_D190212_S2	2	533.7814331054688	2	533.782025	1065.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.82	1	50.647	50.147	51.147	-0.17347								0	0	0	0.030705	1	19484	19484		81.864	37.457	1				15003	1150	9115	9165	14399	14399					0.01934340586012695
ILHWVLLRL	9	Unmodified	_ILHWVLLRL_					0	0	0		ENST00000416600.6_1_20:3847373-3847754:+|nuORF;nc|ENSG00000088888|Q7Z434-3|MAVS	ENST00000416600.6_1_20:3847373-3847754:+|nuORF	ENST00000416600.6_1_20:3847373-3847754:+|nuORF	MSMS	HCT116MG_D190212_S4	4	388.25396728515625	3	388.253488	1161.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.428	1	46.057	45.557	46.557	-0.37134								0	0	0	0.76991	1	17142	17142		1.1933	0	1				15004	7758	9116	9166	14400	14400					0.16423457669975505
ILIKEDYFPRI	11	Unmodified	_ILIKEDYFPRI_					0	0	0		ENSG00000119392|ENST00000309971|GLE1	ENSG00000119392|ENST00000309971|GLE1	ENSG00000119392|ENST00000309971|GLE1	MULTI-SECPEP	HCT116MG_D190212_S2	2	469.2228088378906	3	469.606255	1405.79694	0.16354	7.68E-05	-1.4449	-0.00067856	-1.2814	-0.00060176	469.9397625321465	23.397	0.15495	23.011	22.934	23.089	-0.3852					4	2	2	0	0	0	0.36616	1	8356	8356		0.50596	0.051438	1	7668200			15005	2637	9117	9167	14401	14401					0.11027049733934291
ILIPRVWR	8	Unmodified	_ILIPRVWR_					0	0	0		AMBP|p.R204W|1|0.27|ENSG00000106927|chr9:114062752-114062752|G/A|missense_variant	AMBP|p.R204W|1|0.27|ENSG00000106927|chr9:114062752-114062752|G/A|missense_variant	AMBP|p.R204W|1|0.27|ENSG00000106927|chr9:114062752-114062752|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.3429565429688	2	526.840011	1051.66547	0.51039	0.00026889	-1.2693	-0.0006687	-0.75888	-0.00039981	527.3415691935487	48.752	0.45593	48.608	48.388	48.844	-0.1437					13	8	2	0	0	0	0.77285	1	18615	18615		14.582	2.0501	1	36611000			15006	122	9118	9168	14402	14402					0.14170328947352573
ILIWVFMIIFY	11	Unmodified	_ILIWVFMIIFY_					0	0	0		tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	tr|U7STB1|U7STB1_FUSNUProteintranslocasesubunitSecDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secDPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	486.61376953125	3	486.613694	1456.81925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.794	1	51.485	50.985	51.985	-0.30927								0	0	0	0.95521	1	19564	19564		1.4551	0.94916	1				15007	18432	9119	9169	14403	14403					0.1091155787801199
ILLDERGQIKL	11	Unmodified	_ILLDERGQIKL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;MAP2K7|p.P292Qfs*119|2|0.25|ENSG00000076984|chr19:7911264-7911264|C/-|frameshift_variant;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MSMS	HCT116MG_D190212_S2	2	649.3956298828125	2	649.395544	1296.77654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.778	1	45.677	45.177	46.177	-0.1014								0	0	0	0.33998	1	17419	17419		55.249	16.634	1				15008	1344	9120	9170	14404	14404					0.14001879074135104
ILLDHEKEWKL	11	Unmodified	_ILLDHEKEWKL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	475.6040344238281	3	475.269643	1422.7871	0.12922	6.1412E-05	-0.19197	-9.1237E-05	-0.062752	-2.9824E-05	475.26952005593665	43.446	0.20754	43.446	43.316	43.524	0					7	3	3	0	0	0	0.20607	1	16421	16421		56.328	40.789	1	44765000			15009	2399	9121	9171	14405	14405					0.09261861728555232
ILLDHEKEWKL	11	Unmodified	_ILLDHEKEWKL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MSMS	HCT116MG_D190212_S1	1	712.400390625	2	712.400827	1422.7871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.515	1	43.515	43.015	44.015	0								0	0	0	0.094462	1	16441	16441		82.445	45.939	1				15010	2399	9121	9171	14406	14406					0.09261861728555232
ILLDHEKEWKL	11	Unmodified	_ILLDHEKEWKL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	475.2696533203125	3	475.269643	1422.7871	0.20772	9.8722E-05	-0.02069	-9.8335E-06	0.18703	8.8888E-05	475.269636260462	43.454	0.30959	43.381	43.252	43.561	-0.073376					15	5	4	0	0	0	0.13358	1	16488	16488		63.164	41.055	1	96833000			15011	2399	9121	9171	14407	14407					0.09261861728555232
ILLDHEKEWKL	11	Unmodified	_ILLDHEKEWKL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	712.401123046875	2	712.400827	1422.7871	0.9582	0.00068262	-0.73982	-0.00052705	0.21838	0.00015557	712.4000827848491	43.454	0.25821	43.381	43.252	43.51	-0.073376					7	4	2	0	0	0	0.0041166	1	16501	16501		142.94	93.386	1	43857000			15012	2399	9121	9171	14408	14408					0.09261861728555232
ILLDHEKEWKL	11	Unmodified	_ILLDHEKEWKL_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	356.7037353515625	4	356.704052	1422.7871	-0.19138	-6.8265E-05	-0.2384	-8.504E-05	-0.42978	-0.0001533	356.7038776398192	43.463	0.25821	43.389	43.252	43.51	-0.073372					8	4	3	0	0	0	0.48205	1	16503	16503		33.632	20.703	1	22605000			15013	2399	9121	9171	14409	14409					0.09261861728555232
ILLDNDHYAM	10	Unmodified	_ILLDNDHYAM_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	HCT116MG_D190212_S2	2	602.7872314453125	2	602.786981	1203.55941	0.44438	0.00026787	0.050208	3.0265E-05	0.49459	0.00029813	602.7869465999478	44.167	0.2565	44.089	43.916	44.173	-0.078369					10	4	3	0	0	0	0.22442	1	16782	16782		57.249	29.62	1	24982000			15014	1859	9122	9172	14410	14410					-0.03422839470931649
ILLDWHFQQC	10	Unmodified	_ILLDWHFQQC_					0	0	0			REV__nc|ENSG00000198022|A6NJ88|SAGE2P	REV__nc|ENSG00000198022|A6NJ88|SAGE2P	MSMS	HCT116MG_D190212_S1	1	434.8822326660156	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.9324	1	2.9324	2.4324	3.4324	0								0	0	0	0.96911	1	881	881		0.15932	0	1		+		15015	17262	9123	9173	14411	14411					-0.016068539630396117
ILLFLLGW	8	Unmodified	_ILLFLLGW_					0	0	0			REV__ST6GAL2|p.P93Lfs*81|1|0.33|ENSG00000144057|chr2:106843702-106843702|C/-|frameshift_variant	REV__ST6GAL2|p.P93Lfs*81|1|0.33|ENSG00000144057|chr2:106843702-106843702|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	487.8090515136719	2	487.807314	973.600075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.964	1	54.964	54.464	55.464	0								0	0	0	0.86899	1	21093	21093		17.087	0	1		+		15016	12414	9124	9174	14412	14412					0.11221914701661717
ILLFRRPLPK	10	Unmodified	_ILLFRRPLPK_					0	0	0		ENSG00000123975|ENST00000314355|CKS2;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MSMS	HCT116MG_D190212_S4	4	418.2797546386719	3	418.279926	1251.81795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.749	1	57.455	56.955	57.955	-0.29465								0	0	0	0.97045	1	21685	21685		0.15932	0	1				15017	2820	9125	9175	14413	14413					0.20211104624104337
ILLGKISVT	9	Unmodified	_ILLGKISVT_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	HCT116MG_D190212_S1	1	472.3117980957031	2	472.312961	942.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.426	1	57.426	56.926	57.926	0								0	0	0	0.7689	1	22098	22098		4.756	0	1		+	+	15018	10264	9126	9176	14414	14414					0.13776692005137647
ILLHLESEL	9	Unmodified	_ILLHLESEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	HCT116MG_D190212_S1	1	533.8106079101562	2	533.810782	1065.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.311	1	52.311	51.811	52.811	0								0	0	0	0.026974	1	20004	20004		85.357	10.934	1				15019	2271	9127	9177	14415	14415					0.07683182791583931
ILLHLESEL	9	Unmodified	_ILLHLESEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S2	2	533.8111572265625	2	533.810782	1065.60701	0.59002	0.00031496	-0.26059	-0.00013911	0.32943	0.00017585	533.8105723397589	52.508	0.30919	52.321	52.142	52.451	-0.18725					9	5	2	0	0	0	0.0082751	1	20174	20174		117.6	24.777	1	32435000			15020	2271	9127	9177	14416	14416					0.07683182791583931
ILLIKALAL	9	Unmodified	_ILLIKALAL_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MSMS	HCT116MG_D190212_S1	1	484.34808349609375	2	484.349346	966.684139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.444	1	62.444	61.944	62.944	0								0	0	0	0.77025	1	24112	24112		0	0	1		+		15021	13247	9128	9178	14417	14417					0.19946445798530021
ILLIKALAL	9	Unmodified	_ILLIKALAL_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MSMS	HCT116MG_D190212_S1	1	484.8135986328125	2	484.349346	966.684139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.577	1	62.577	62.077	63.077	0								0	0	0	0.77025	1	24166	24166		0	0	1		+		15022	13247	9128	9178	14418	14418					0.19946445798530021
ILLIKALAL	9	Unmodified	_ILLIKALAL_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MSMS	HCT116MG_D190212_S1	1	484.34796142578125	2	484.349346	966.684139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.016	1	63.016	62.516	63.516	0								0	0	0	0.77025	1	24343	24343		0	0	1		+		15023	13247	9128	9178	14419	14419					0.19946445798530021
ILLIKALAL	9	Unmodified	_ILLIKALAL_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MSMS	HCT116MG_D190212_S1	1	484.3108215332031	2	484.349346	966.684139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.362	1	63.362	62.862	63.862	0								0	0	0	0.77025	1	24478	24478		0	0	1		+		15024	13247	9128	9178	14420	14420					0.19946445798530021
ILLIKALAL	9	Unmodified	_ILLIKALAL_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MSMS	HCT116MG_D190212_S4	4	484.3477783203125	2	484.349346	966.684139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.582	1	62.333	61.833	62.833	-0.24919								0	0	0	0.77025	1	23632	23632		0	0	1		+		15025	13247	9128	9178	14421	14421					0.19946445798530021
ILLKKKRKKK	10	Unmodified	_ILLKKKRKKK_					0	0	0		ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	MSMS	HCT116MG_D190212_S3	3	428.1512756347656	3	428.318492	1281.93365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.966	1	11.014	10.514	11.514	0.04739								0	0	0	0.97116	1	3347	3347		0	0	1				15026	7380	9129	9179	14422	14422					0.3039562847495745
ILLKKKRKKK	10	Unmodified	_ILLKKKRKKK_					0	0	0		ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	MSMS	HCT116MG_D190212_S3	3	427.8812255859375	3	428.318492	1281.93365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.868	1	11.923	11.423	12.423	0.055045								0	0	0	0.97116	1	3663	3663		0	0	1				15027	7380	9129	9179	14423	14423					0.3039562847495745
ILLKKKRKKK	10	Unmodified	_ILLKKKRKKK_					0	0	0		ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	MSMS	HCT116MG_D190212_S3	3	428.317626953125	3	428.318492	1281.93365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.169	1	12.224	11.724	12.724	0.055045								0	0	0	0.97116	1	3776	3776		0	0	1				15028	7380	9129	9179	14424	14424					0.3039562847495745
ILLKKKRKKK	10	Unmodified	_ILLKKKRKKK_					0	0	0		ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	MSMS	HCT116MG_D190212_S4	4	428.3177795410156	3	428.318492	1281.93365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.874	1	11.7	11.2	12.2	-0.17441								0	0	0	0.97116	1	3669	3669		0	0	1				15029	7380	9129	9179	14425	14425					0.3039562847495745
ILLKKKRKKK	10	Unmodified	_ILLKKKRKKK_					0	0	0		ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	ENST00000367142.4_1_1:205687318-205687402:-|nuORF	MSMS	HCT116MG_D190212_S4	4	428.3179931640625	3	428.318492	1281.93365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.949	1	12.784	12.284	13.284	-0.16496								0	0	0	0.97054	1	4042	4042		0.13989	0	1				15030	7380	9129	9179	14426	14426					0.3039562847495745
ILLNGLLTFLY	11	Unmodified	_ILLNGLLTFLY_					0	0	0			REV__OR10H5|p.L130Cfs*7|1|0.31|ENSG00000172519|chr19:15794432-15794432|C/-|frameshift_variant	REV__OR10H5|p.L130Cfs*7|1|0.31|ENSG00000172519|chr19:15794432-15794432|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	640.385986328125	2	640.386657	1278.75876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.444	1	38.142	37.642	38.642	-0.30137								0	0	0	0.95023	1	14241	14241		6.2058	0	1		+		15031	13368	9130	9180	14427	14427					0.13053163819290603
ILLVPAFRFF	10	Unmodified	_ILLVPAFRFF_					0	0	0		ENST00000264335.12_1_17:1248430-1248544:-|nuORF	ENST00000264335.12_1_17:1248430-1248544:-|nuORF	ENST00000264335.12_1_17:1248430-1248544:-|nuORF	MSMS	HCT116MG_D190212_S3	3	408.25030517578125	3	408.249743	1221.7274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.091	1	38.79	38.29	39.29	-0.30137								0	0	0	0.96183	1	14503	14503		2.086	0	1				15032	6889	9131	9181	14428	14428					0.12540635575828674
ILMDERTFL	9	Unmodified	_ILMDERTFL_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;ENST00000463046.5_1_2:61417336-61434009:-|nuORF	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-MSMS	HCT116MG_D190212_S2	2	569.3021850585938	2	569.302267	1136.58998	0.28863	0.00016432	-0.30389	-0.000173	-0.015254	-8.6841E-06	569.3023849845413	53.077	0.26009	52.887	52.758	53.018	-0.18922					8	4	2	0	0	0	0.094138	1	20404	20404		59.368	21.217	1	30284000			15033	2470	9132	9182	14429	14429					0.027149389141186475
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(41)EHIHKL	0	0	1		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S1	1	383.88629150390625	3	383.886476	1148.6376	-0.13596	-5.2193E-05	0.28421	0.0001091	0.14825	5.6911E-05	383.8863678966763	27.449	0.25904	27.449	27.282	27.541	0					7	4	2	0	0	0	0.20521	1	9978	9978		40.725	23.282	1	12675000			15034	2153	9133	9183	14430	14430		41			0.06922637904949624
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(80)EHIHKL	0	0	1		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MSMS	HCT116MG_D190212_S1	1	575.3262939453125	2	575.326076	1148.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.497	1	27.497	26.997	27.997	0								0	0	0	0.033127	1	9980	9980		79.596	35.189	1				15035	2153	9133	9183	14431	14431		41			0.06922637904949624
ILMEHIHKL	9	Oxidation (M)	_ILM(Oxidation (M))EHIHKL_		ILM(1)EHIHKL		ILM(73)EHIHKL	0	0	1		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MSMS	HCT116MG_D190212_S2	2	575.3262329101562	2	575.326076	1148.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.002	1	27.667	27.167	28.167	-0.33472								0	0	0	0.040848	1	10196	10196		72.968	23.299	1				15036	2153	9133	9183	14432	14432		41			0.06922637904949624
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S1	1	378.5547180175781	3	378.554838	1132.64269	0.03174	1.2015E-05	-0.09995	-3.7836E-05	-0.068209	-2.5821E-05	378.55475971334965	33.27	0.31076	33.27	33.089	33.4	0					15	5	4	0	0	0	0.16143	1	12307	12307		46.022	11.801	1	100110000			15037	2153	9133	9184	14433	14433					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S1	1	567.3287963867188	2	567.328619	1132.64269	0.50677	0.0002875	-0.038575	-2.1885E-05	0.46819	0.00026562	567.3285477813848	33.27	0.31076	33.27	33.089	33.4	0					14	5	4	0	0	0	0.028026	1	12310	12310		106.94	106.94	1	70637000			15038	2153	9133	9184	14434	14434					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S2	2	378.554931640625	3	378.554838	1132.64269	0.17589	6.6584E-05	-0.10957	-4.1479E-05	0.066319	2.5105E-05	378.55476588944947	33.493	0.3597	33.3	33.123	33.482	-0.19297					20	6	4	0	0	0	0.12465	1	12431	12431		53.317	14.702	1	535130000			15039	2153	9133	9184	14435	14435					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S2	2	567.3291015625	2	567.328619	1132.64269	0.76921	0.0004364	-0.068909	-3.9094E-05	0.7003	0.0003973	567.3285753444678	33.492	0.46392	33.299	33.123	33.587	-0.19297					21	8	4	0	0	0	0.0081783	1	12432	12432		142.08	67.151	1	423540000			15040	2153	9133	9184	14436	14436					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S3	3	567.3287353515625	2	567.328619	1132.64269	0.44733	0.00025378	-0.21801	-0.00012369	0.22932	0.0001301	567.3285081673417	33.62	0.25903	33.33	33.2	33.459	-0.29013					12	4	4	0	0	0	0.028026	1	12354	12354		106.94	48.261	1	30387000			15041	2153	9133	9184	14437	14437					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S3	3	378.55474853515625	3	378.554838	1132.64269	-0.060807	-2.3019E-05	0.23856	9.0309E-05	0.17775	6.729E-05	378.55477053337205	33.62	0.3107	33.33	33.2	33.511	-0.29013					12	5	3	0	0	0	0.31258	1	12367	12367		29.437	6.7791	1	33472000			15042	2153	9133	9184	14438	14438					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S4	4	378.55523681640625	3	378.554838	1132.64269	0.22346	8.4591E-05	-0.35298	-0.00013362	-0.12952	-4.9032E-05	378.5546718083539	33.771	0.20261	33.387	33.263	33.466	-0.38426					6	3	2	0	0	0	0.31258	1	12315	12315		29.437	7.847	1	8052100			15043	2153	9133	9184	14439	14439					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S4	4	567.3287963867188	2	567.328619	1132.64269	0.63658	0.00036115	-0.28262	-0.00016034	0.35396	0.00020081	567.3283822797523	33.782	0.20261	33.398	33.263	33.466	-0.38426					6	3	2	0	0	0	0.14268	1	12324	12324		61.602	29.296	1	3619700			15044	2153	9133	9184	14440	14440					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	378.554838	1132.64269	0.03174	1.2015E-05	-0.09995	-3.7836E-05	-0.068209	-2.5821E-05	378.55475971334965	33.27	0.31076	33.27	33.089	33.4	0	-0.051534	-3.6009E-05	NaN	53.317	15	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100110000			15045	2153	9133	9184							0.08166941767581193
ILMGVLKEV	9	Unmodified	_ILMGVLKEV_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	HCT116MG_D190212_S2	2	501.3072204589844	2	501.306821	1000.59909	0.50604	0.00025368	0.57624	0.00028888	1.0823	0.00054256	501.3072076527362	52.664	0.3107	52.477	52.295	52.606	-0.18725					9	5	2	0	0	0	0.016744	1	20243	20243		99.755	6.9331	1	20835000			15046	2213	9134	9185	14441	14441					0.09881332270447274
ILMKEQLML	9	Unmodified	_ILMKEQLML_					0	0	0		ENST00000490652.1_1_1:23664981-23665089:-|nuORF;ENST00000478691.5_1_1:23664326-23665089:-|nuORF	ENST00000490652.1_1_1:23664981-23665089:-|nuORF	ENST00000490652.1_1_1:23664981-23665089:-|nuORF	MSMS	HCT116MG_D190212_S2	2	559.8197631835938	2	559.819238	1117.62392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.055	1	51.871	51.371	52.371	-0.18369								0	0	0	0.040848	1	19987	19987		72.968	11.61	1				15047	8224	9135	9186	14442	14442					0.06981644081497507
ILMLFIAVCMM	11	Unmodified	_ILMLFIAVCMM_					0	0	0			REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	429.088623046875	3	428.891077	1283.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0353	1	1.0353	0.53533	1.5353	0								0	0	0	0.96208	1	306	306		0	0	1		+		15048	17369	9136	9187	14443	14443					0.02092088025869998
ILMLFIAVCMM	11	Unmodified	_ILMLFIAVCMM_					0	0	0			REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	429.0886535644531	3	428.891077	1283.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6076	1	5.6076	5.1076	6.1076	0								0	0	0	0.96208	1	1686	1686		0	0	1		+		15049	17369	9136	9187	14444	14444					0.02092088025869998
ILMLFIAVCMM	11	Unmodified	_ILMLFIAVCMM_					0	0	0			REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.891077	1283.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0438	1	2.0991	1.5991	2.5991	0.055284								0	0	0	0.96208	1	618	618		0	0	1		+		15050	17369	9136	9187	14445	14445					0.02092088025869998
ILMLFIAVCMM	11	Unmodified	_ILMLFIAVCMM_					0	0	0			REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.891077	1283.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1269	1	8.1434	7.6434	8.6434	0.016533								0	0	0	0.96208	1	2450	2450		0	0	1		+		15051	17369	9136	9187	14446	14446					0.02092088025869998
ILMLFIAVCMM	11	Unmodified	_ILMLFIAVCMM_					0	0	0			REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	REV__OR4C6|p.I211M|1|0.61|ENSG00000181903|chr11:55665799-55665799|C/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	428.89117431640625	3	428.891077	1283.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3118	1	8.3284	7.8284	8.8284	0.016533								0	0	0	0.96208	1	2510	2510		0	0	1		+		15052	17369	9136	9187	14447	14447					0.02092088025869998
ILNGSLNL	8	Unmodified	_ILNGSLNL_					0	0	0			REV__TLR7|p.F670Lfs*8|1|0.32|ENSG00000196664|chrX:12887514-12887514|T/-|frameshift_variant	REV__TLR7|p.F670Lfs*8|1|0.32|ENSG00000196664|chrX:12887514-12887514|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	422.25042724609375	2	422.25036	842.486168	0.048353	2.0417E-05	0.06122	2.585E-05	0.10957	4.6268E-05	422.250326590075	26.949	0.26297	26.596	26.45	26.713	-0.35254					6	4	2	0	0	0	0.557	1	9804	9804		36.127	2.0246	1	5469200	+		15053	14041	9137	9188	14448	14448					0.05862399868760804
ILPFYVSFL	9	Unmodified	_ILPFYVSFL_					0	0	0			REV__ENST00000533572.5_1_8:11724915-11725143:-|nuORF	REV__ENST00000533572.5_1_8:11724915-11725143:-|nuORF	MSMS	HCT116MG_D190212_S1	1	366.8784484863281	3	366.879316	1097.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.405	1	10.405	9.9055	10.905	0								0	0	0	0.76991	1	3191	3191		1.1933	0	1		+		15054	16327	9138	9189	14449	14449					0.07121576147892483
ILPIRKVPGV	10	Unmodified	_ILPIRKVPGV_					0	0	0		tr|U7SRN9|U7SRN9_FUSNUTetraacyldisaccharide4'-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxKPE=3SV=1	tr|U7SRN9|U7SRN9_FUSNUTetraacyldisaccharide4'-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxKPE=3SV=1	tr|U7SRN9|U7SRN9_FUSNUTetraacyldisaccharide4'-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lpxKPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	546.3665161132812	2	546.368601	1090.72265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.36	1	58.19	57.69	58.69	-0.1703								0	0	0	0.96291	1	22553	22553		1.8442	0.19162	1				15055	18405	9139	9190	14450	14450					0.18091751433075842
ILPLLYKKYLQ	11	Unmodified	_ILPLLYKKYLQ_					0	0	0			REV__nc|ENSG00000142655|O75381-2|PEX14	REV__nc|ENSG00000142655|O75381-2|PEX14	MSMS	HCT116MG_D190212_S2	2	696.3717041015625	2	696.436681	1390.85881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.763	1	57.588	57.088	58.088	-0.17494								0	0	0	0.95023	1	22310	22310		6.2058	2.6093	1		+		15056	12363	9140	9191	14451	14451					0.17901401153085317
ILPPANLHK	9	Unmodified	_ILPPANLHK_					0	0	0			REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	REV__tr|U7T484|U7T484_FUSNUAAA+ATPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00292PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	501.8098449707031	2	501.808377	1001.6022	0.50027	0.00025104	0.87936	0.00044127	1.3796	0.00069231	501.8088573193745	34.96	0.41449	34.801	34.657	35.072	-0.15834					13	7	2	0	0	0	0.33687	1	13069	13069		26.884	0.54238	1	16413000	+		15057	17965	9141	9192	14452	14452					0.10146343439464545
ILPRLQKLPK	10	Unmodified	_ILPRLQKLPK_					0	0	0		ENST00000452380.6_1_10:17194042-17210877:-|nuORF;ENSG00000107614|ENST00000377799|TRDMT1	ENST00000452380.6_1_10:17194042-17210877:-|nuORF	ENST00000452380.6_1_10:17194042-17210877:-|nuORF	MSMS	HCT116MG_D190212_S3	3	402.6082763671875	3	402.607931	1204.80196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.646	1	15.731	15.231	16.231	0.085423								0	0	0	0.97045	1	5135	5135		0.15932	0.036457	1				15058	2121	9142	9193	14453	14453					0.2077539838719531
ILPTKMREKTP	11	Unmodified	_ILPTKMREKTP_					0	0	0		ENST00000433165.6_1_6:154727490-154754936:-|nuORF;ENSG00000153721|ENST00000607772|CNKSR3;nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3	ENST00000433165.6_1_6:154727490-154754936:-|nuORF	ENST00000433165.6_1_6:154727490-154754936:-|nuORF	MSMS	HCT116MG_D190212_S1	1	657.3819580078125	2	657.384122	1312.75369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.621	1	42.621	42.121	43.121	0								0	0	0	0.93374	1	16080	16080		14.838	1.7958	1				15059	4195	9143	9194	14454	14454					0.10982536684991828
ILQDETKGY	9	Unmodified	_ILQDETKGY_					0	0	0			REV__nc|ENSG00000185697|P10243-2|MYBL1	REV__nc|ENSG00000185697|P10243-2|MYBL1	MSMS	HCT116MG_D190212_S2	2	533.7744750976562	2	533.774396	1065.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.941	1	36.826	36.326	37.326	-0.11478								0	0	0	0.76603	1	13831	13831		14.838	1.3304	1		+		15060	13854	9144	9195	14455	14455					0.004094289981594557
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;SNRPN|p.D89Ifs*53|1|0.42|ENSG00000128739|chr15:24976405-24976405|C/-|frameshift_variant;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000128739|ENST00000390687|SNRPN	ENSG00000128739|ENST00000390687|SNRPN	MULTI-MSMS	HCT116MG_D190212_S1	1	537.8190307617188	2	537.818941	1073.62333	0.34401	0.00018501	-0.34736	-0.00018682	-0.003358	-1.806E-06	537.8186415843157	51.477	0.25187	51.477	51.297	51.549	0					6	4	2	0	0	0	0.14362	1	19692	19692		49.554	5.7819	1	24333000			15061	3012	9145	9196	14456	14456					0.08946308748318188
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;SNRPN|p.D89Ifs*53|1|0.42|ENSG00000128739|chr15:24976405-24976405|C/-|frameshift_variant;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000128739|ENST00000390687|SNRPN	ENSG00000128739|ENST00000390687|SNRPN	MULTI-MSMS	HCT116MG_D190212_S2	2	537.8190307617188	2	537.818941	1073.62333	0.501	0.00026945	0.057987	3.1187E-05	0.55899	0.00030064	537.8189049443754	51.634	0.30809	51.45	51.27	51.578	-0.18369					14	5	3	0	0	0	0.014023	1	19818	19818		103.42	24.691	1	106700000			15062	3012	9145	9196	14457	14457					0.08946308748318188
ILQHILKKLS	10	Unmodified	_ILQHILKKLS_					0	0	0		ENST00000558121.5_1_15:60715835-60734771:-|nuORF;ENSG00000128915|ENST00000261520|ICE2	ENST00000558121.5_1_15:60715835-60734771:-|nuORF	ENST00000558121.5_1_15:60715835-60734771:-|nuORF	MSMS	HCT116MG_D190212_S4	4	398.2646789550781	3	398.264053	1191.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.29	1	13.125	12.625	13.625	-0.16496								0	0	0	0.96937	1	4162	4162		0.13989	0	1				15063	3018	9146	9197	14458	14458					0.18211405633292088
ILQRLIKIERI	11	Unmodified	_ILQRLIKIERI_					0	0	0			REV__CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant	REV__CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	697.6277465820312	2	697.963929	1393.9133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.398	1	33.108	32.608	33.608	-0.29013								0	0	0	0.96141	1	12256	12256		0.35063	0	1		+		15064	10140	9147	9198	14459	14459					0.23210413024503396
ILQRWDEI	8	Unmodified	_ILQRWDEI_					0	0	0		ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	MSMS	HCT116MG_D190212_S1	1	358.1973571777344	3	358.197708	1071.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.147	1	28.147	27.647	28.647	0								0	0	0	0.8837	1	10242	10242		7.2892	0.56607	1				15065	6698	9148	9199	14460	14460					0.03837145334568959
ILRADLLPP	9	Unmodified	_ILRADLLPP_					0	0	0		nc|ENSG00000130159|Q9BQ95-3|ECSIT;ENSG00000130159|ENST00000270517|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	MULTI-MSMS	HCT116MG_D190212_S2	2	504.282958984375	2	504.316035	1006.61752	0.34537	0.00017418	0.86722	0.00043735	1.2126	0.00061153	504.3168967362408	53.67	0.20694	53.48	53.325	53.532	-0.18939					5	3	2	0	0	0	0.2853	1	20603	20603		32.305	5.4218	1	3487000			15066	3059	9149	9200	14461	14461					0.11447210236656247
ILRDKINPPLP	11	Unmodified	_ILRDKINPPLP_					0	0	0			REV__ENST00000541541.5_1_12:31862005-31881942:-|nuORF	REV__ENST00000541541.5_1_12:31862005-31881942:-|nuORF	MSMS	HCT116MG_D190212_S4	4	638.39404296875	2	638.392805	1274.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.233	1	46.863	46.363	47.363	-0.37038								0	0	0	0.94924	1	17465	17465		6.7232	0.99131	1		+		15067	12610	9150	9201	14462	14462					0.14466200282345199
ILRERDVDL	9	Unmodified	_ILRERDVDL_					0	0	0		ENSG00000121940|ENST00000369969|CLCC1;nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1;nc|ENSG00000121940|Q96S66-2|CLCC1	ENSG00000121940|ENST00000369969|CLCC1	ENSG00000121940|ENST00000369969|CLCC1	MSMS	HCT116MG_D190212_S1	1	564.8484497070312	2	564.822212	1127.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.476	1	48.476	47.976	48.976	0								0	0	0	0.76923	1	18447	18447		3.5965	1.5367	1				15068	2743	9151	9202	14463	14463					0.07116201909047959
ILREVREPNRI	11	Unmodified	_ILREVREPNRI_					0	0	0		ENSG00000204480|ENST00000376101|PRAMEF19	ENSG00000204480|ENST00000376101|PRAMEF19	ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	HCT116MG_D190212_S1	1	465.6125183105469	3	465.612404	1393.81538	0.34866	0.00016234	-0.28744	-0.00013383	0.061222	2.8506E-05	465.61227358904534	28.139	0.20785	28.139	28.008	28.216	0					9	3	3	0	0	0	0.74191	1	10240	10240		4.7159	4.7159	1	25114000			15069	6336	9152	9203	14464	14464					0.13422604428501472
ILRKVPLKLH	10	Unmodified	_ILRKVPLKLH_					0	0	0		ENST00000372927.5_2_X:100356228-100357313:+|nuORF	ENST00000372927.5_2_X:100356228-100357313:+|nuORF	ENST00000372927.5_2_X:100356228-100357313:+|nuORF	MSMS	HCT116MG_D190212_S2	2	406.281494140625	3	406.279926	1215.81795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.922	1	16.58	16.08	17.08	-0.34183								0	0	0	0.97045	1	5727	5727		0.15932	0.15932	1				15070	7469	9153	9204	14465	14465					0.21867104624107014
ILRPPKVLSP	10	Unmodified	_ILRPPKVLSP_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;MDC1|p.K1304Sfs*57|1|0.38|ENSG00000137337|chr6:30705274-30705274|G/-|frameshift_variant;MDC1|p.K183Nfs*9|1|0.26|ENSG00000137337|chr6:30713686-30713686|T/-|frameshift_variant;MDC1|p.S184Ifs*14|1|0.32|ENSG00000137337|chr6:30713685-30713686|-/T|frameshift_variant	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MSMS	HCT116MG_D190212_S1	1	560.7363891601562	2	560.366059	1118.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.779	1	18.779	18.279	19.279	0								0	0	0	0.95351	1	6475	6475		3.9444	0	1				15071	3473	9154	9205	14466	14466					0.1629544757045096
ILSEYPELKP	10	Unmodified	_ILSEYPELKP_					0	0	0		tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	tr|U7T0T9|U7T0T9_FUSNUOsmoprotectanttransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00647PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	594.829833984375	2	594.829172	1187.64379	0.55854	0.00033224	1.0479	0.00062335	1.6065	0.00095559	594.8297812389209	44.989	0.25925	44.989	44.88	45.139	0					5	4	2	0	0	0	0.82332	1	17075	17075		10.074	2.1638	1	7646400			15072	18549	9155	9206	14467	14467					0.05747434617455838
ILSGLYLATLP	11	Unmodified	_ILSGLYLATLP_					0	0	0			REV__ALDH1A3|p.K284Rfs*83|4|0.34|ENSG00000184254|chr15:100898145-100898145|G/-|frameshift_variant	REV__ALDH1A3|p.K284Rfs*83|4|0.34|ENSG00000184254|chr15:100898145-100898145|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	580.8492431640625	2	580.849907	1159.68526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.258	1	37.875	37.375	38.375	-0.38283								0	0	0	0.95636	1	14015	14015		2.9952	0	1		+		15073	9913	9156	9207	14468	14468					0.11180615376792957
ILSGTKLIKP	10	Unmodified	_ILSGTKLIKP_					0	0	0		CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant;CEP162|p.R1099Efs*46|2|0.27|ENSG00000135315|chr6:84152880-84152881|-/T|frameshift_variant;CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162;ENST00000497936.5_1_6:84884653-84936120:-|nuORF;CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant	CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	357.2382507324219	3	357.237504	1068.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.665	1	36.665	36.165	37.165	0								0	0	0	0.96183	1	13674	13674		2.086	0.89267	1				15074	403	9157	9208	14469	14469					0.15908338959297907
ILSKKTRDP	9	Unmodified	_ILSKKTRDP_					0	0	0		SYCE1|p.Q106Tfs*17|1|0.09|ENSG00000171772|chr10:133558170-133558171|-/T|frameshift_variant	SYCE1|p.Q106Tfs*17|1|0.09|ENSG00000171772|chr10:133558170-133558171|-/T|frameshift_variant	SYCE1|p.Q106Tfs*17|1|0.09|ENSG00000171772|chr10:133558170-133558171|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	353.2166442871094	3	353.216991	1056.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.42	1	30.17	29.67	30.67	-0.24946								0	0	0	0.76948	1	11085	11085		2.7352	0	1				15075	18244	9158	9209	14470	14470					0.10309407259978798
ILSKMVILY	9	Unmodified	_ILSKMVILY_					0	0	0			REV__ENST00000278520.9_2_11:96117649-96117892:-|nuORF	REV__ENST00000278520.9_2_11:96117649-96117892:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	540.3302001953125	2	540.330296	1078.64604	0.44618	0.00024108	0.031651	1.7102E-05	0.47783	0.00025819	540.3302034243325	48.129	2.4884	47.813	46.957	49.445	-0.31596					112	48	4	0	0	0	0.55223	2	18536	18536;18560		13.906	3.0821	1	44972000	+		15076	14710	9159	9210	14471;14472	14471					0.10986191821598368
ILTAVRRRRKK	11	Unmodified	_ILTAVRRRRKK_					0	0	0			REV__ENST00000485891.1_1_2:75745265-75787829:-|nuORF	REV__ENST00000485891.1_1_2:75745265-75787829:-|nuORF	MSMS	HCT116MG_D190212_S2	2	699.0776977539062	2	698.970411	1395.92627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.625	1	30.351	29.851	30.851	-0.27406								0	0	0	0.95023	1	11267	11267		6.2058	4.8763	1		+		15077	15986	9160	9211	14473	14473					0.2441428892723252
ILTCVVCTW	9	Unmodified	_ILTCVVCTW_					0	0	0			REV__ENSG00000109674|ENST00000264596|NEIL3	REV__ENSG00000109674|ENST00000264596|NEIL3	MULTI-MSMS	HCT116MG_D190212_S2	2	519.26171875	2	519.261556	1036.50856	0.54438	0.00028268	-0.40945	-0.00021261	0.13494	7.0067E-05	519.2614244319973	35.744	1.0321	35.601	35.283	36.316	-0.14245					40	19	3	0	0	0	0.30509	1	13316	13316		30.225	10.786	1	67550000	+		15078	11378	9161	9212	14474	14474					-0.008234600494915867
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S1	1	480.2923889160156	2	480.292225	958.569897	0.12059	5.792E-05	0.40882	0.00019635	0.52941	0.00025427	480.29235891164717	41.107	0.29166	41.107	40.946	41.237	0					15	5	4	0	0	0	0.016744	1	15471	15471		99.755	23.994	1	107080000			15079	4945	9162	9213	14475	14475					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2923583984375	2	480.292225	958.569897	0.064438	3.0949E-05	0.61272	0.00029429	0.67716	0.00032524	480.29241278028877	41.132	0.30853	41.064	40.882	41.191	-0.068199					16	5	4	0	0	0	0.0067688	1	15515	15515		122.18	46.418	1	637990000			15080	4945	9162	9213	14476	14476					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	959.577880859375	1	959.577174	958.569897	0.47955	0.00046017	0.021944	2.1057E-05	0.5015	0.00048122	959.5768280801774	41.151	0.25745	41.083	40.882	41.14	-0.068199					9	4	3	0	0	0	0.0082095	1	15537	15537		117.76	28.807	1	52151000			15081	4945	9162	9213	14477	14477					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S3	3	480.2923278808594	2	480.292225	958.569897	0.11934	5.7316E-05	-0.011235	-5.3961E-06	0.1081	5.192E-05	480.29204925674685	41.344	0.30951	41.042	40.893	41.202	-0.30185					13	7	3	0	0	0	0.016744	1	15372	15372		99.755	27.833	1	49475000			15082	4945	9162	9213	14478	14478					0.0889551124580521
ILTTHKIIR	9	Unmodified	_ILTTHKIIR_					0	0	0		nc|ENSG00000198521|P17038-2|ZNF43;ENSG00000198521|ENST00000354959|ZNF43	nc|ENSG00000198521|P17038-2|ZNF43	nc|ENSG00000198521|P17038-2|ZNF43	MULTI-MSMS	HCT116MG_D190212_S2	2	547.8562622070312	2	547.855858	1093.69716	0.50329	0.00027573	0.090203	4.9418E-05	0.59349	0.00032515	547.8557518114822	60.096	1.1833	59.941	59.492	60.675	-0.15441					34	22	2	0	0	0	0.71345	1	23391	23391		4.3292	0.38484	1	27371000			15083	6235	9163	9214	14479	14479					0.15406276910653105
ILVALRHILRQ	11	Unmodified	_ILVALRHILRQ_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MSMS	HCT116MG_D190212_S3	3	666.4342651367188	2	666.435338	1330.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.764	1	60.518	60.018	61.018	-0.24588								0	0	0	0.9598	1	23176	23176		1.1933	0.12188	1				15084	4334	9164	9215	14480	14480					0.2039299053878949
ILVALRHILRQ	11	Unmodified	_ILVALRHILRQ_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MSMS	HCT116MG_D190212_S4	4	666.4343872070312	2	666.435338	1330.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.207	1	59.935	59.435	60.435	-0.27156								0	0	0	0.9598	1	22679	22679		1.1933	0.12188	1				15085	4334	9164	9215	14481	14481					0.2039299053878949
ILVGYTKQ	8	Unmodified	_ILVGYTKQ_					0	0	0			REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1	REV__tr|U7T012|U7T012_FUSNUPeptidaseS8/S53domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00769PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	461.27581787109375	2	461.273835	920.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.109	1	25.109	24.609	25.609	0								0	0	0	0.8837	1	9018	9018		12.532	4.6214	1		+		15086	17887	9165	9216	14482	14482					0.06967259419911898
ILVKIFLKKR	10	Unmodified	_ILVKIFLKKR_					0	0	0		ENST00000437852.2_1_9:116613102-116613318:-|nuORF	ENST00000437852.2_1_9:116613102-116613318:-|nuORF	ENST00000437852.2_1_9:116613102-116613318:-|nuORF	MSMS	HCT116MG_D190212_S2	2	629.4432983398438	2	629.442101	1256.86965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.858	1	29.557	29.057	30.057	-0.30095								0	0	0	0.96911	1	10954	10954		0.45834	0.057624	1				15087	7891	9166	9217	14483	14483					0.25148848318008277
ILVKLVISGAR	11	Unmodified	_ILVKLVISGAR_					0	0	0			REV__ENST00000602490.1_1_1:183599580-183599799:-|nuORF	REV__ENST00000602490.1_1_1:183599580-183599799:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.2634582519531	3	390.264053	1167.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.132	1	60.132	59.632	60.632	0								0	0	0	0.9619	1	23173	23173		0.094841	0.094841	1		+		15088	12889	9167	9218	14484	14484					0.19315405633255978
ILVMKELKN	9	Unmodified	_ILVMKELKN_					0	0	0		PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.3116455078125	2	544.330827	1086.6471	0.50741	0.0002762	-2.9633	-0.001613	-2.4559	-0.0013368	544.3290110284427	54.399	0.20459	54.209	54.048	54.252	-0.1894					5	3	2	0	0	0	0.12897	1	20938	20938		57.722	1.5449	1	11821000			15089	5597	9168	9219	14485	14485					0.10724406190502123
ILVVLPVY	8	Unmodified	_ILVVLPVY_					0	0	0			REV__ENST00000461162.5_1_9:95887192-95893805:-|nuORF	REV__ENST00000461162.5_1_9:95887192-95893805:-|nuORF	MSMS	HCT116MG_D190212_S2	2	458.29736328125	2	458.299322	914.584091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.867	1	28.551	28.051	29.051	-0.31613								0	0	0	0.8837	1	10549	10549		11.114	0	1		+		15090	11965	9169	9220	14486	14486					0.12338208464757372
ILWKQYLP	8	Unmodified	_ILWKQYLP_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.F608Lfs*7|1|0.38|ENSG00000127463|chr1:19231381-19231381|A/-|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MSMS	HCT116MG_D190212_S3	3	354.2120666503906	3	354.211177	1059.6117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.756	1	32.47	31.97	32.97	-0.28511								0	0	0	0.8837	1	12017	12017		1.8442	0.6509	1				15091	774	9170	9221	14487	14487					0.0842811172499296
ILWLYLVE	8	Unmodified	_ILWLYLVE_					0	0	0			REV__ENST00000409264.6_1_2:201741660-201747124:-|nuORF	REV__ENST00000409264.6_1_2:201741660-201747124:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	524.2952270507812	2	524.807511	1047.60047	-0.0061849	-3.2459E-06	0.30972	0.00016254	0.30354	0.0001593	524.807660322751	43.35	0.20592	43.277	43.097	43.303	-0.073376					5	3	2	0	0	0	0.25894	1	16405	16405		26.341	0	1	8710200	+		15092	15434	9171	9222	14488	14488					0.07857289630851483
ILYGEVEKL	9	Unmodified	_ILYGEVEKL_					0	0	0		nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B;nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-3|MAT2B	nc|ENSG00000038274|Q9NZL9-3|MAT2B	MULTI-SECPEP	HCT116MG_D190212_S2	2	532.772216796875	2	532.305332	1062.59611	0.18584	9.8922E-05	-0.08579	-4.5666E-05	0.10005	5.3256E-05	532.3051784775021	44.173	0.20527	44.095	43.967	44.173	-0.078373					8	3	3	0	0	0	0.17064	1	16775	16775		45.74	5.7902	1	33013000			15093	992	9172	9223	14489	14489					0.0673178041729443
ILYPKTLFL	9	Unmodified	_ILYPKTLFL_					0	0	0		PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;PPP3CA|p.R148C|1|0.15|ENSG00000138814|chr4:101099665-101099665|G/A|missense_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	554.343994140625	2	554.344261	1106.67397	0.42337	0.00023469	-0.8195	-0.00045428	-0.39613	-0.00021959	554.3436395513746	56.52	0.15683	56.338	56.207	56.364	-0.18261					6	2	3	0	0	0	0.20983	1	21818	21818		40.239	3.733	1	18787000			15094	3592	9173	9224	14490	14490					0.12489838073315696
ILYRKKIFWKI	11	Unmodified	_ILYRKKIFWKI_					0	0	0		ENST00000519705.1_1_8:43052051-43054709:+|nuORF;ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	MSMS	HCT116MG_D190212_S3	3	754.4796752929688	2	754.479215	1506.94388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.073	1	45.76	45.26	46.26	-0.31237								0	0	0	0.96208	1	17269	17269		0	0	1				15095	4748	9174	9225	14491	14491					0.21068191409540304
ILYRKKIFWKI	11	Unmodified	_ILYRKKIFWKI_					0	0	0		ENST00000519705.1_1_8:43052051-43054709:+|nuORF;ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	MSMS	HCT116MG_D190212_S4	4	754.4799194335938	2	754.479215	1506.94388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.026	1	45.654	45.154	46.154	-0.37206								0	0	0	0.96208	1	17000	17000		0	0	1				15096	4748	9174	9225	14492	14492					0.21068191409540304
ILYYRRKK	8	Unmodified	_ILYYRRKK_					0	0	0		sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1;sp|F5HDK1|US27_HCMVMEnvelopeglycoproteinUS27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US27PE=3SV=1	sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	570.3555908203125	2	570.356025	1138.6975	0.396	0.00022586	-0.77236	-0.00044052	-0.37636	-0.00021466	570.3555006753355	55.283	0.20311	55.095	54.968	55.171	-0.18797					5	3	2	0	0	0	0.82475	1	21336	21336		8.5933	0.98433	1	33482000			15097	18195	9175	9226	14493	14493					0.13369696630502403
IMDDPAGNSY	10	Unmodified	_IMDDPAGNSY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	HCT116MG_D190212_S2	2	1082.447998046875	1	1082.4459	1081.43863	0.57412	0.00062145	0.25784	0.0002791	0.83196	0.00090055	1082.446267884678	33.773	0.20839	33.58	33.482	33.691	-0.19297					6	3	2	0	0	0	0.0084034	1	12572	12572		157.8	111.77	1	11293000			15098	2225	9176	9227	14494	14494					-0.09883667184408296
IMDDPAGNSY	10	Unmodified	_IMDDPAGNSY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	HCT116MG_D190212_S3	3	1082.4473876953125	1	1082.4459	1081.43863	0.42115	0.00045587	-0.035872	-3.8829E-05	0.38528	0.00041704	1082.445767266609	34.035	0.26045	33.741	33.559	33.819	-0.29419					7	4	2	0	0	0	0.014564	1	12530	12530		133.05	102.42	1	5057000			15099	2225	9176	9227	14495	14495					-0.09883667184408296
IMDDPAGNSY	10	Unmodified	_IMDDPAGNSY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MSMS	HCT116MG_D190212_S3	3	542.2283935546875	2	541.726589	1081.43863	0.48755	0.00026412	0.057963	3.14E-05	0.54552	0.00029552	541.7264805412226	34.005	0.36457	33.711	33.507	33.871	-0.2942					13	6	3	0	0	0	0.091457	1	12531	12531		75.761	33.666	1	4582900			15100	2225	9176	9227	14496	14496					-0.09883667184408296
IMDDPAGNSY	10	Unmodified	_IMDDPAGNSY_					0	0	0		ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	ENSG00000109917|ENST00000227322|ZPR1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	541.726589	1081.43863	0.60339	0.00032687	0.025043	1.3566E-05	0.62843	0.00034044	541.7264625382602	33.806	0.31211	33.613	33.43	33.742	-0.19297	-0.049187	-1.989E-05	NaN	75.761	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12475000			15101	2225	9176	9227							-0.09883667184408296
IMFDKMINY	9	Unmodified	_IMFDKMINY_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MSMS	HCT116MG_D190212_S2	2	392.1926574707031	3	392.192689	1173.55624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.606	1	21.221	20.721	21.721	-0.38503								0	0	0	0.7676	1	7613	7613		5.7319	0	1		+		15102	14241	9177	9228	14497	14497					-0.023598058493007557
IMGEFRTEV	9	Unmodified	_IMGEFRTEV_					0	0	0		ENST00000534336.1_1_11:65268195-65268336:+|nuORF	ENST00000534336.1_1_11:65268195-65268336:+|nuORF	ENST00000534336.1_1_11:65268195-65268336:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	541.2708129882812	2	541.270967	1080.52738	0.21971	0.00011892	0.079419	4.2987E-05	0.29912	0.00016191	541.2710330026573	40.768	0.20565	40.768	40.64	40.846	0					8	3	3	0	0	0	0.012531	1	15350	15350		107.1	65.26	1	25709000			15103	8650	9178	9229	14498	14498					-0.009662071540560646
IMGEFRTEV	9	Unmodified	_IMGEFRTEV_					0	0	0		ENST00000534336.1_1_11:65268195-65268336:+|nuORF	ENST00000534336.1_1_11:65268195-65268336:+|nuORF	ENST00000534336.1_1_11:65268195-65268336:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	541.270967	1080.52738	0.66514	0.00036002	0.037527	2.0312E-05	0.70267	0.00038033	541.2709338481333	40.785	0.31036	40.715	40.571	40.881	-0.069626	-0.026247	-2.7531E-05	NaN	107.1	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75928000			15104	8650	9178	9229							-0.009662071540560646
IMILITSGCMF	11	Unmodified	_IMILITSGCMF_					0	0	0			REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	410.21075439453125	3	410.209463	1227.60656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.414	1	48.098	47.598	48.598	-0.31596								0	0	0	0.95521	1	18208	18208		1.4551	0.26178	1		+		15105	17683	9179	9230	14499	14499					0.0018598048418425606
IMISDRFGWRP	11	Unmodified	_IMISDRFGWRP_					0	0	0			REV__ENST00000246006.4_1_20:23064260-23064440:-|nuORF	REV__ENST00000246006.4_1_20:23064260-23064440:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	688.8624877929688	2	689.358439	1376.70233	0.55314	0.00038131	1.5015	0.001035	2.0546	0.0014164	689.8616398510158	48.333	0.56652	48.333	48.048	48.614	0					19	10	3	0	0	0	0.36512	1	18444	18444		2.7352	0	1	9645700	+		15106	14571	9180	9231	14500	14500					0.0290421271095056
IMKKLKYVL	9	Unmodified	_IMKKLKYVL_					0	0	0		CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant;nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant	CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	379.2488098144531	3	379.247234	1134.71987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.837	1	51.528	51.028	52.028	-0.30927								0	0	0	0.76991	1	19581	19581		1.1933	0.41681	1				15107	402	9181	9232	14501	14501					0.15790159983885133
IMKVIKFV	8	Unmodified	_IMKVIKFV_					0	0	0			REV__ENSG00000039123|ENST00000230640|MTREX	REV__ENSG00000039123|ENST00000230640|MTREX	MSMS	HCT116MG_D190212_S4	4	488.97869873046875	2	489.314449	976.614345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.736	1	55.424	54.924	55.924	-0.312								0	0	0	0.8837	1	20878	20878		2.8892	0.31174	1		+		15108	10585	9182	9233	14502	14502					0.1251024385828714
IMKVIKFV	8	Unmodified	_IMKVIKFV_					0	0	0			REV__ENSG00000039123|ENST00000230640|MTREX	REV__ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	HCT116MG_D190212_S4	4	489.6304931640625	2	489.314449	976.614345	-0.024051	-1.1768E-05	0.17032	8.3342E-05	0.14627	7.1574E-05	489.31449230062964	51.837	2.6505	51.492	50.946	53.597	-0.34547					154	50	5	0	0	0	0.32917	1	20050	20050		0	0	1	695170000	+		15109	10585	9182	9233	14503	14503					0.1251024385828714
IMKVTVKTPK	10	Unmodified	_IMKVTVKTPK_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-4|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MSMS	HCT116MG_D190212_S4	4	382.2435607910156	3	382.24226	1143.70495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.849	1	25.559	25.059	26.059	-0.29022								0	0	0	0.94345	1	9180	9180		6.1918	0.89496	1				15110	3322	9183	9234	14504	14504					0.13884668115906607
IMLATGVINQ	10	Unmodified	_IMLATGVINQ_					0	0	0			REV__ENSG00000148248|ENST00000371989|SURF4	REV__ENSG00000148248|ENST00000371989|SURF4	MSMS	HCT116MG_D190212_S1	1	530.2972412109375	2	530.296985	1058.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.173	1	51.173	50.673	51.673	0								0	0	0	0.90475	1	19544	19544		14.838	0	1		+		15111	12534	9184	9235	14505	14505					0.052469562596797914
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	HCT116MG_D190212_S1	1	537.305419921875	2	537.30481	1072.59507	0.46676	0.00025079	-0.029461	-1.583E-05	0.4373	0.00023496	537.3046794831299	52.445	0.3082	52.445	52.228	52.536	0					9	5	2	0	0	0	0.0096523	1	20056	20056		114.2	31.672	1	40391000			15112	3843	9185	9236	14506	14506					0.06167242776700732
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	HCT116MG_D190212_S2	2	537.30517578125	2	537.30481	1072.59507	0.54632	0.00029354	-0.16964	-9.1148E-05	0.37668	0.00020239	537.3046856545798	52.668	0.46442	52.481	52.295	52.76	-0.18725					16	8	3	0	0	0	0.011082	1	20236	20236		110.67	31.078	1	50911000			15113	3843	9185	9236	14507	14507					0.06167242776700732
IMLLKKPV	8	Unmodified	_IMLLKKPV_					0	0	0			REV__ENST00000441047.1_1_17:51834352-51834658:-|nuORF	REV__ENST00000441047.1_1_17:51834352-51834658:-|nuORF	MSMS	HCT116MG_D190212_S1	1	471.3168640136719	2	471.314449	940.614345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.238	1	52.238	51.738	52.738	0								0	0	0	0.8837	1	19975	19975		0.79363	0.10326	1		+		15114	15645	9186	9237	14508	14508					0.14166243858289818
IMMMNVKFL	9	Unmodified	_IMMMNVKFL_					0	0	0			REV__ENST00000610146.1_1_1:155951728-155952130:+|nuORF	REV__ENST00000610146.1_1_1:155951728-155952130:+|nuORF	MSMS	HCT116MG_D190212_S4	4	376.1994934082031	3	376.198898	1125.57486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.326	1	48.962	48.462	49.462	-0.36386								0	0	0	0.76862	1	18292	18292		5.7319	1.4026	1		+		15115	16792	9187	9238	14509	14509					0.01710032520918503
IMMQRDRSGPQ	11	Unmodified	_IMMQRDRSGPQ_					0	0	0		RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant;RIC1|p.M978Ifs*8|1|0.04|ENSG00000107036|chr9:5765505-5765506|-/TTGGGAA|frameshift_variant;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	RIC1|p.M978Nfs*6|1|0.04|ENSG00000107036|chr9:5765503-5765504|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	659.8228149414062	2	659.821363	1317.62817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.715	1	31.342	30.842	31.842	-0.37372								0	0	0	0.94385	1	11522	11522		9.544	0.79857	1				15116	2100	9188	9239	14510	14510					-0.01793498442884811
IMNELRLS	8	Unmodified	_IMNELRLS_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MSMS	HCT116MG_D190212_S1	1	488.270263671875	2	488.268227	974.521901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.334	1	24.334	23.834	24.834	0								0	0	0	0.8837	1	8707	8707		10.824	2.9138	1				15117	1390	9189	9240	14511	14511					0.03362114054118592
IMPLSIIPLL	10	Unmodified	_IMPLSIIPLL_					0	0	0			REV__F13A1|p.P290Hfs*72|1|0.45|ENSG00000124491|chr6:6224790-6224790|G/-|frameshift_variant	REV__F13A1|p.P290Hfs*72|1|0.45|ENSG00000124491|chr6:6224790-6224790|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	555.3535766601562	2	555.353771	1108.69299	0.28865	0.0001603	-0.0059754	-3.3185E-06	0.28268	0.00015699	555.353628331465	54.108	1.1808	53.919	53.429	54.61	-0.1894					72	22	4	0	0	0	0.87641	1	20930	20930		4.3292	4.3292	1	495870000	+		15118	16802	9190	9241	14512	14512					0.14299051372722715
IMQLMTKHEGT	11	Unmodified	_IMQLMTKHEGT_					0	0	0			REV__ENSG00000109511|ENST00000359299|ANXA10	REV__ENSG00000109511|ENST00000359299|ANXA10	MULTI-MSMS	HCT116MG_D190212_S4	4	644.8211669921875	2	644.82304	1287.63153	0.48666	0.00031381	-2.0431	-0.0013174	-1.5564	-0.0010036	644.8213879651329	28.039	0.36396	27.711	27.599	27.963	-0.32793					9	6	2	0	0	0	0.71532	1	10078	10078		16.149	0.90062	1	3159400	+		15119	11373	9191	9242	14513	14513					-0.0007824838887700025
IMQSNWDFE	9	Unmodified	_IMQSNWDFE_					0	0	0			REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	HCT116MG_D190212_S3	3	585.2505493164062	2	585.250231	1168.48591	0.56924	0.00033315	-0.76177	-0.00044583	-0.19253	-0.00011268	585.2499791974972	30.087	0.41975	29.837	29.65	30.069	-0.24946					12	7	3	0	0	0	0.57626	1	10963	10963		12.532	0.89125	1	10545000	+		15120	13001	9192	9243	14514	14514					-0.09159387913427963
IMQSNWDFE	9	Unmodified	_IMQSNWDFE_					0	0	0			REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	HCT116MG_D190212_S4	4	585.2500610351562	2	585.250231	1168.48591	0.35852	0.00020982	-0.60355	-0.00035323	-0.24503	-0.0001434	585.2498583979318	30.188	0.26004	29.831	29.649	29.909	-0.3571					7	4	2	0	0	0	0.57626	1	10939	10939		12.532	0.29089	1	6372000	+		15121	13001	9192	9243	14515	14515					-0.09159387913427963
IMRRLLRRN	9	Unmodified	_IMRRLLRRN_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;ENST00000585839.5_1_19:14580313-14582593:+|nuORF;nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MSMS	HCT116MG_D190212_S1	1	410.2603454589844	3	409.924147	1226.75061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.553	1	52.553	52.053	53.053	0								0	0	0	0.7696	1	20104	20104		1.1933	0	1				15122	1152;2791	9193	9244	14516	14516					0.14630751141521614
IMSKLLRS	8	Unmodified	_IMSKLLRS_					0	0	0			REV__YIPF3|p.E135K|1|0.17|ENSG00000137207|chr6:43513626-43513626|C/T|missense_variant	REV__YIPF3|p.E135K|1|0.17|ENSG00000137207|chr6:43513626-43513626|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	474.2906799316406	2	474.288963	946.563372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.973	1	52.668	52.168	53.168	-0.30468								0	0	0	0.8837	1	20038	20038		5.2307	0	1		+		15123	18060	9194	9245	14517	14517					0.08795294813455712
IMSLRKAA	8	Unmodified	_IMSLRKAA_					0	0	0		ENSG00000104549|ENST00000265896|SQLE;SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MSMS	HCT116MG_D190212_S4	4	445.26959228515625	2	445.26803	888.521507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.113	1	46.742	46.242	47.242	-0.37038								0	0	0	0.8837	1	17416	17416		4.756	2.1785	1				15124	1940	9195	9246	14518	14518					0.07278739124899403
INDLKKLLKAY	11	Unmodified	_INDLKKLLKAY_					0	0	0		tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	tr|U7STK5|U7STK5_FUSNUFructose-1,6-bisphosphataseclass3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fbpPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	659.9110107421875	2	659.908288	1317.80202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.3	1	49.3	48.8	49.8	0								0	0	0	0.95581	1	18782	18782		3.2813	0.28607	1				15125	18446	9196	9247	14519	14519					0.15583353596548477
INDLYRPYTSF	11	Unmodified	_INDLYRPYTSF_					0	0	0			REV__ENST00000587009.5_1_19:4446812-4447750:-|nuORF	REV__ENST00000587009.5_1_19:4446812-4447750:-|nuORF	MSMS	HCT116MG_D190212_S1	1	695.322265625	2	694.845884	1387.67722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.408	1	49.408	48.908	49.908	0								0	0	0	0.95343	1	18826	18826		4.5289	0	1		+		15126	16662	9197	9248	14520	14520					-0.0011156361063058284
INDPNPPSRP	10	Unmodified	_INDPNPPSRP_					0	0	0			REV__ENSG00000172399|ENST00000307128|MYOZ2	REV__ENSG00000172399|ENST00000307128|MYOZ2	MULTI-SECPEP	HCT116MG_D190212_S2	2	553.2808227539062	2	553.783087	1105.55162	0.33992	0.00018824	-0.84069	-0.00046556	-0.50077	-0.00027732	553.782785886526	20.776	0.68453	20.397	19.917	20.602	-0.37949					25	12	3	0	0	0	0.23155	1	7214	7214		36.506	5.2379	1	13538000	+		15127	13386	9198	9249	14521	14521					0.0030676932381084043
INDPNPPSRP	10	Unmodified	_INDPNPPSRP_					0	0	0			REV__ENSG00000172399|ENST00000307128|MYOZ2	REV__ENSG00000172399|ENST00000307128|MYOZ2	MULTI-MSMS	HCT116MG_D190212_S3	3	553.7820434570312	2	553.783087	1105.55162	0.31785	0.00017602	-0.30144	-0.00016693	0.016407	9.0861E-06	553.7830499950458	20.259	0.98958	20.307	19.53	20.52	0.048109					39	18	4	0	0	0	0.20072	1	6913	6913		59.368	13.669	1	24660000	+		15128	13386	9198	9249	14522	14522					0.0030676932381084043
INDPNPPSRP	10	Unmodified	_INDPNPPSRP_					0	0	0			REV__ENSG00000172399|ENST00000307128|MYOZ2	REV__ENSG00000172399|ENST00000307128|MYOZ2	MULTI-MSMS	HCT116MG_D190212_S3	3	553.7832641601562	2	553.783087	1105.55162	0.32122	0.00017788	-0.10201	-5.6492E-05	0.2192	0.00012139	553.7830429469633	21.318	0.99675	21.336	20.75	21.747	0.018446					46	18	3	0	0	0	0.45751	1	7536	7536		38.176	5.3899	1	19491000	+		15129	13386	9198	9249	14523	14523					0.0030676932381084043
INDPNPPSRP	10	Unmodified	_INDPNPPSRP_					0	0	0			REV__ENSG00000172399|ENST00000307128|MYOZ2	REV__ENSG00000172399|ENST00000307128|MYOZ2	MULTI-SECPEP	HCT116MG_D190212_S3	3	553.291259765625	2	553.783087	1105.55162	0.31785	0.00017602	-0.30144	-0.00016693	0.016407	9.0861E-06	553.7830499950458	20.259	0.98958	20.307	19.53	20.52	0.048109					39	18	4	0	0	0	0.26351	1	7072	7072		29.082	5.061	1	24660000	+		15130	13386	9198	9249	14524	14524					0.0030676932381084043
INDPNPPSRP	10	Unmodified	_INDPNPPSRP_					0	0	0			REV__ENSG00000172399|ENST00000307128|MYOZ2	REV__ENSG00000172399|ENST00000307128|MYOZ2	MULTI-MSMS	HCT116MG_D190212_S4	4	553.782470703125	2	553.783087	1105.55162	0.45308	0.00025091	-0.50977	-0.0002823	-0.056694	-3.1396E-05	553.782980064327	20.544	0.72781	20.342	19.729	20.456	-0.20133					40	13	4	0	0	0	0.33085	1	6936	6936		47.732	9.5564	1	21963000	+		15131	13386	9198	9249	14525	14525					0.0030676932381084043
INDPNPPSRP	10	Unmodified	_INDPNPPSRP_					0	0	0			REV__ENSG00000172399|ENST00000307128|MYOZ2	REV__ENSG00000172399|ENST00000307128|MYOZ2	MULTI-MSMS	HCT116MG_D190212_S4	4	553.7655029296875	2	553.783087	1105.55162	0.4608	0.00025518	-0.26237	-0.00014529	0.19843	0.00010989	553.782939565323	21.58	1.1423	21.362	20.751	21.893	-0.21832					55	21	4	0	0	0	0.28966	2	7467	7332;7467		51.415	11.176	1	18348000	+		15132	13386	9198	9249	14526;14527	14527					0.0030676932381084043
INEGPFKDC	9	Unmodified	_INEGPFKDC_					0	0	0		ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant;ENSG00000116194|ENST00000234816|ANGPTL1	ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	ANGPTL1|p.W318Lfs*22|1|0.15|ENSG00000116194|chr1:178853660-178853661|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	511.7345275878906	2	511.734217	1021.45388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.04	1	21.074	20.574	21.574	0.034473								0	0	0	0.57787	1	7311	7311		24.991	0.31707	1				15133	127	9199	9250	14528	14528					-0.05598755596543015
INENNTHEQP	10	Unmodified	_INENNTHEQP_					0	0	0			REV__nc|ENSG00000261239|Q6NSI1|ANKRD26P1	REV__nc|ENSG00000261239|Q6NSI1|ANKRD26P1	MULTI-MSMS	HCT116MG_D190212_S4	4	599.7562866210938	2	598.270541	1194.52653	0.66898	0.00040023	6.2828E-05	3.7588E-08	0.66904	0.00040027	598.2706309239396	17.013	0.96791	16.847	16.261	17.229	-0.16664					38	18	3	0	0	0	0.77151	1	5584	5584		14.405	1.3629	1	4908600	+		15134	17314	9200	9251	14529	14529					-0.06295330269426813
INEPVEEY	8	Unmodified	_INEPVEEY_					0	0	0			REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	992.4581298828125	1	992.457118	991.449842	0.67624	0.00067114	0.015375	1.5259E-05	0.69162	0.0006864	992.4573899791937	45.538	0.41725	45.227	44.992	45.409	-0.31094					12	7	2	0	0	0	0.2477	1	17029	17029		64.236	13.381	1	5905000	+		15135	17986	9201	9252	14530	14530					-0.04622521818612313
INEPVEEY	8	Unmodified	_INEPVEEY_					0	0	0			REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	992.4569091796875	1	992.457118	991.449842	0.64809	0.00064321	-0.078186	-7.7596E-05	0.56991	0.00056561	992.4567721788319	45.511	0.46193	45.138	44.936	45.398	-0.37265					18	8	3	0	0	0	0.19608	2	16766	16766;16856		74.423	20.847	1	8938900	+		15136	17986	9201	9252	14531;14532	14531					-0.04622521818612313
INEPVEEY	8	Unmodified	_INEPVEEY_					0	0	0			REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	992.457118	991.449842	0.67624	0.00067114	0.015375	1.5259E-05	0.69162	0.0006864	992.4573899791937	45.538	0.41725	45.227	44.992	45.409	-0.31094	0.044307	7.4367E-05	NaN	74.423	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5905000	+		15137	17986	9201	9252							-0.04622521818612313
INEPVEEY	8	Unmodified	_INEPVEEY_					0	0	0			REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	REV__tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	992.457118	991.449842	0.64809	0.00064321	-0.078186	-7.7596E-05	0.56991	0.00056561	992.4567721788319	45.511	0.46193	45.138	44.936	45.398	-0.37265	-0.044307	-1.8488E-05	NaN	74.423	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8938900	+		15138	17986	9201	9252							-0.04622521818612313
INFIDLIDGR	10	Unmodified	_INFIDLIDGR_					0	0	0			REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	REV__tr|U7SZW4|U7SZW4_FUSNUTranscription-repair-couplingfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mfdPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	588.3247680664062	2	588.324588	1174.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.262	1	56.262	55.762	56.762	0								0	0	0	0.92283	1	21625	21625		10.8	1.8233	1		+		15139	17885	9202	9253	14533	14533					0.05429086051822196
INFKLRAF	8	Unmodified	_INFKLRAF_					0	0	0		ENST00000534470.1_1_11:10820460-10820850:-|nuORF	ENST00000534470.1_1_11:10820460-10820850:-|nuORF	ENST00000534470.1_1_11:10820460-10820850:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	504.3019714355469	2	504.803094	1007.59164	0.29603	0.00014944	-2.8215	-0.0014243	-2.5254	-0.0012748	505.302393472655	44.663	0.31309	44.663	44.464	44.777	0					7	5	2	0	0	0	0.33021	1	16861	16861		2.5775	0	1	16387000			15140	8652	9203	9254	14534	14534					0.08814360785049757
INFKWDPKSLE	11	Unmodified	_INFKWDPKSLE_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant;CTNNA1|p.L103Ffs*12|1|0.1|ENSG00000044115|chr5:138810041-138810042|-/T|frameshift_variant;CTNNA1|p.N41Tfs*54|1|0.45|ENSG00000044115|chr5:138783191-138783191|A/-|frameshift_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MSMS	HCT116MG_D190212_S1	1	688.8624877929688	2	688.864077	1375.7136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.469	1	48.469	47.969	48.969	0								0	0	0	0.95025	1	18444	18444		6.1918	0.89496	1				15141	1019	9204	9255	14535	14535					0.04077313286097706
INGDFEDYKRE	11	Unmodified	_INGDFEDYKRE_					0	0	0		ABCF1|p.D821N|1|0.22|ENSG00000204574|chr6:30590624-30590624|G/A|missense_variant	ABCF1|p.D821N|1|0.22|ENSG00000204574|chr6:30590624-30590624|G/A|missense_variant	ABCF1|p.D821N|1|0.22|ENSG00000204574|chr6:30590624-30590624|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	693.320556640625	2	693.320231	1384.62591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.587	1	26.286	25.786	26.786	-0.30087								0	0	0	0.94012	1	9478	9478		11.495	1.3441	1				15142	12	9205	9256	14536	14536					-0.051019323753507706
INGEYEVSHQP	11	Unmodified	_INGEYEVSHQP_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	MSMS	HCT116MG_D190212_S4	4	636.7966918945312	2	636.796392	1271.57823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.39	1	22.162	21.662	22.662	-0.22777								0	0	0	0.93456	1	7786	7786		14.405	1.5328	1		+		15143	12039	9206	9257	14537	14537					-0.046695865755282284
INGLFENEN	9	Unmodified	_INGLFENEN_					0	0	0			REV__STON1-GTF2A1L|p.D1072N|1|0.21|ENSG00000068781|chr2:48669845-48669845|G/A|missense_variant	REV__STON1-GTF2A1L|p.D1072N|1|0.21|ENSG00000068781|chr2:48669845-48669845|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	525.787841796875	2	525.248546	1048.48254	0.33905	0.00017808	0.26493	0.00013915	0.60397	0.00031724	525.2485969681845	20.016	0.4149	19.641	19.455	19.869	-0.37503					22	7	4	0	0	0	0.59184	1	6903	6903		11.64	0	1	38348000	+		15144	17598	9207	9258	14538	14538					-0.03976314695751171
INHPSGPQ	8	Unmodified	_INHPSGPQ_					0	0	0			REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B	REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B	MSMS	HCT116MG_D190212_S4	4	425.2143859863281	2	425.214309	848.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.096	1	10.915	10.415	11.415	-0.18135								0	0	0	0.8837	1	3422	3422		2.5775	0.27475	1		+		15145	12593	9208	9259	14539	14539					-0.016205144849436692
INIAVLTVQNY	11	Unmodified	_INIAVLTVQNY_					0	0	0			REV__CEP104|p.A144T|1|0.28|ENSG00000116198|chr1:3845348-3845348|C/T|missense_variant	REV__CEP104|p.A144T|1|0.28|ENSG00000116198|chr1:3845348-3845348|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	624.3546752929688	2	624.353345	1246.69214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.17	1	32.17	31.67	32.67	0								0	0	0	0.91257	1	11862	11862		18.373	3.9677	1		+		15146	10152	9209	9260	14540	14540					0.07865928257388077
INICVFQTK	9	Unmodified	_INICVFQTK_					0	0	0			REV__WDR47|p.K595T|1|0.18|ENSG00000085433|chr1:108986664-108986664|T/G|missense_variant	REV__WDR47|p.K595T|1|0.18|ENSG00000085433|chr1:108986664-108986664|T/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	533.2940063476562	2	533.291702	1064.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.833	1	25.463	24.963	25.963	-0.36914								0	0	0	0.76638	1	9320	9320		19.257	8.4331	1		+		15147	18054	9210	9261	14541	14541					0.03914973605242267
INIGHSEGI	9	Unmodified	_INIGHSEGI_					0	0	0			REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	470.248291015625	2	470.248349	938.482145	0.39299	0.0001848	-0.1935	-9.0991E-05	0.19949	9.3811E-05	470.2482206018001	26.11	0.26094	26.11	25.927	26.188	0					7	4	2	0	0	0	0.2853	1	9448	9448		32.305	5.4218	1	3366600	+		15148	10586	9211	9262	14542	14542					0.01044310375061741
ININLYNWERY	11	Unmodified	_ININLYNWERY_					0	0	0		ENST00000463240.1_1_3:159992387-159995209:-|nuORF	ENST00000463240.1_1_3:159992387-159995209:-|nuORF	ENST00000463240.1_1_3:159992387-159995209:-|nuORF	MSMS	HCT116MG_D190212_S2	2	749.3770751953125	2	749.377883	1496.74121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.569	1	39.491	38.991	39.991	-0.077835								0	0	0	0.95636	1	14897	14897		2.9952	0	1				15149	8072	9212	9263	14543	14543					0.012712165462971825
INKETIENV	9	Unmodified	_INKETIENV_					0	0	0		tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	530.789306640625	2	530.287671	1058.56079	0.33626	0.00017831	0.041538	2.2027E-05	0.3778	0.00020034	530.287640617932	34.207	0.41714	34.207	34.024	34.441	0					18	7	4	0	0	0	0.023778	1	12675	12675		92.653	3.2526	1	78916000			15150	18494	9213	9264	14544	14544					0.03385117889456524
INKETIENV	9	Unmodified	_INKETIENV_					0	0	0		tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2875366210938	2	530.287671	1058.56079	0.55758	0.00029568	-0.18145	-9.6222E-05	0.37612	0.00019945	530.2874752997049	34.325	0.4145	34.15	33.967	34.382	-0.17512					18	7	4	0	0	0	0.055677	1	12767	12767		71.922	5.4656	1	202130000			15151	18494	9213	9264	14545	14545					0.03385117889456524
INKETIENV	9	Unmodified	_INKETIENV_					0	0	0		tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	tr|U7SVN8|U7SVN8_FUSNUMethyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01289PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	1059.570068359375	1	1059.56807	1058.56079	0.7101	0.0007524	1.0872	0.001152	1.7973	0.0019044	1059.5693262310865	34.325	0.20769	34.15	34.02	34.227	-0.17512					6	3	2	0	0	0	0.061422	1	12780	12780		69.105	2.6482	1	37357000			15152	18494	9213	9264	14546	14546					0.03385117889456524
INKTTERAP	9	Unmodified	_INKTTERAP_					0	0	0		nc|ENSG00000141446|Q5FWF5-2|ESCO1;ENSG00000141446|ENST00000269214|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.7095336914062	2	515.288005	1028.56146	0.25227	0.00012999	0.25192	0.00012981	0.50419	0.00025981	515.288160514726	24.682	0.26053	24.302	24.187	24.448	-0.38003					5	4	2	0	0	0	0.24622	1	8883	8883		11.64	1.5664	1	6080500			15153	3716	9214	9265	14547	14547					0.04831957329179204
INKVAEGTKTS	11	Unmodified	_INKVAEGTKTS_					0	0	0			REV__ENSG00000168077|ENST00000301904|SCARA3	REV__ENSG00000168077|ENST00000301904|SCARA3	MULTI-MSMS	HCT116MG_D190212_S1	1	574.319580078125	2	574.319502	1146.62445	0.25055	0.00014389	0.18239	0.00010475	0.43293	0.00024864	574.3195755461459	49.976	1.1853	49.976	49.44	50.626	0					28	22	2	0	0	0	0.73696	2	18961	18961;19219		8.1555	2.8586	1	9805200	+		15154	13186	9215	9266	14548;14549	14548					0.057004783265938386
INLFVKDEVP	10	Unmodified	_INLFVKDEVP_					0	0	0		tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	587.3278198242188	2	587.329339	1172.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.355	1	48.039	47.539	48.539	-0.31596								0	0	0	0.95507	1	18184	18184		3.5965	0	1				15155	18639	9216	9267	14550	14550					0.06470854337317178
INLTSRLLK	9	Unmodified	_INLTSRLLK_					0	0	0			REV__ENST00000564925.1_1_4:79696522-79696732:-|nuORF	REV__ENST00000564925.1_1_4:79696522-79696732:-|nuORF	MSMS	HCT116MG_D190212_S2	2	529.3399658203125	2	529.340041	1056.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.383	1	58.213	57.713	58.713	-0.1703								0	0	0	0.76906	1	22563	22563		6.7232	0	1		+		15156	16526	9217	9268	14551	14551					0.13946284156691036
INMEIAKNF	9	Unmodified	_INMEIAKNF_					0	0	0			REV__nc|ENSG00000173612|Q5T6X5-3|GPRC6A	REV__nc|ENSG00000173612|Q5T6X5-3|GPRC6A	MSMS	HCT116MG_D190212_S2	2	540.2819213867188	2	540.281334	1078.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.823	1	48.679	48.179	49.179	-0.1437								0	0	0	0.64498	1	18665	18665		21.747	5.8995	1		+		15157	13447	9218	9269	14552	14552					0.011983832255964444
INMTFSIIP	9	Unmodified	_INMTFSIIP_					0	0	0			REV__tr|U7T5P7|U7T5P7_FUSNUcitratelyaseholo-[acyl-carrierprotein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00039PE=4SV=1	REV__tr|U7T5P7|U7T5P7_FUSNUcitratelyaseholo-[acyl-carrierprotein]synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00039PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	518.28125	2	518.280803	1034.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.438	1	32.16	31.66	32.66	-0.27841								0	0	0	0.76818	1	11889	11889		7.2892	0	1		+		15158	17988	9219	9270	14553	14553					0.03116168856695367
INNKIIRSS	9	Unmodified	_INNKIIRSS_					0	0	0			REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	HCT116MG_D190212_S2	2	523.829833984375	2	522.811648	1043.60874	0.52159	0.00027269	0.05916	3.093E-05	0.58075	0.00030362	522.81153935885	51.953	1.6992	51.769	51.013	52.712	-0.18368					79	32	4	0	0	0	0.72399	1	19904	19904		3.5965	1.019	1	155010000	+		15159	11430	9220	9271	14554	14554					0.08868236600187629
INNNKIAEV	9	Unmodified	_INNNKIAEV_					0	0	0			REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	507.78277587890625	2	507.782556	1013.55056	0.57907	0.00029404	-0.31031	-0.00015757	0.26876	0.00013647	507.7825148750514	33.115	0.25985	33.115	32.933	33.193	0					8	4	3	0	0	0	0.035914	1	12247	12247		81.613	5.8522	1	12726000	+		15160	17906	9221	9272	14555	14555					0.044325549548943854
INNNKIAEV	9	Unmodified	_INNNKIAEV_					0	0	0			REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	508.2648620605469	2	507.782556	1013.55056	0.71565	0.0003634	0.4242	0.0002154	1.1399	0.0005788	507.7827931355801	33.392	0.20483	33.2	33.071	33.276	-0.19297					5	3	2	0	0	0	0.10825	1	12387	12387		43.858	1.9027	1	12556000	+		15161	17906	9221	9272	14556	14556					0.044325549548943854
INNNKIAEV	9	Unmodified	_INNNKIAEV_					0	0	0			REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	507.782556	1013.55056	0.57907	0.00029404	-0.31031	-0.00015757	0.26876	0.00013647	507.7825148750514	33.115	0.25985	33.115	32.933	33.193	0	-0.054366	-0.00013917	NaN	81.613	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12726000	+		15162	17906	9221	9272							0.044325549548943854
INNNKIAEV	9	Unmodified	_INNNKIAEV_					0	0	0			REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	REV__tr|U7T205|U7T205_FUSNUPhage-Barnase-EndoU-ColicinE5/D-RelElikenuclease4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00710PE=4SV=1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	507.782556	1013.55056	0.3025	0.0001536	0.80228	0.00040738	1.1048	0.00056099	507.7825282824713	33.484	0.2029	33.193	33.049	33.252	-0.29013	0.024156	0.00099073	NaN	81.613	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2908800	+		15163	17906	9221	9272							0.044325549548943854
INNSMKIVL	9	Unmodified	_INNSMKIVL_					0	0	0			REV__tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	REV__tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	516.3014526367188	2	516.299527	1030.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.658	1	37.658	37.158	38.158	0								0	0	0	0.74436	1	14076	14076		16.942	4.4107	1		+		15164	17911	9222	9273	14557	14557					0.07043260122304673
INPATNERGTI	11	Unmodified	_INPATNERGTI_					0	0	0		tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	tr|U7SZI6|U7SZI6_FUSNUATP-bindingcassette,subfamilyF,member3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00767PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	395.8794250488281	3	395.878926	1184.61495	0.027715	1.0972E-05	0.99355	0.00039332	1.0213	0.0004043	395.8793272346709	19.331	0.20864	18.962	18.836	19.044	-0.3695					7	3	3	0	0	0	0.72755	1	6715	6715		11.631	2.0874	1	10786000			15165	18531	9223	9274	14558	14558					0.030027100410507046
INPIKKLKKLL	11	Unmodified	_INPIKKLKKLL_					0	0	0			REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	REV__tr|U7STE3|U7STE3_FUSNUUPF0313proteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01317PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	654.4608154296875	2	654.46049	1306.90643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.832	1	39.832	39.332	40.332	0								0	0	0	0.95113	1	14954	14954		5.7319	2.4505	1		+		15166	17793	9224	9275	14559	14559					0.26525100143931013
INRPIAGHSVS	11	Unmodified	_INRPIAGHSVS_					0	0	0			REV__ENSG00000047346|ENST00000619572|ATOSA	REV__ENSG00000047346|ENST00000619572|ATOSA	MULTI-MSMS	HCT116MG_D190212_S2	2	384.5502014160156	3	384.215761	1149.62546	-0.075968	-2.9188E-05	1.3462	0.00051722	1.2702	0.00048803	384.21650144000165	16.617	0.26015	16.275	16.152	16.412	-0.34183					7	4	3	0	0	0	0.7298	1	5623	5623		5.8681	0	1	6423100	+		15167	10600	9225	9276	14560	14560					0.05662737486136393
INRVAEPA	8	Unmodified	_INRVAEPA_					0	0	0		ENST00000460657.1_1_14:24546029-24546936:+|nuORF;ENST00000557829.1_1_14:24545691-24546719:+|nuORF;ENST00000558995.5_1_14:24543475-24546936:+|nuORF;ENSG00000100884|ENST00000689861|CPNE6;nc|ENSG00000100884|O95741-2|CPNE6	ENST00000460657.1_1_14:24546029-24546936:+|nuORF	ENST00000460657.1_1_14:24546029-24546936:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	869.4841918945312	1	869.483942	868.476666	0.702	0.00061038	0.054154	4.7086E-05	0.75615	0.00065746	869.4839298126464	39.683	0.35719	39.605	39.428	39.785	-0.077835					9	6	2	0	0	0	0.62424	1	14970	14970		30.225	5.5509	1	21119000			15168	1735	9226	9277	14561	14561					0.037166315832337204
INSAGAAHYNP	11	Unmodified	_INSAGAAHYNP_					0	0	0		CON__Q1RMK2	CON__Q1RMK2	CON__Q1RMK2	MSMS	HCT116MG_D190212_S2	2	557.767333984375	2	557.767437	1113.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.665	1	20.285	19.785	20.785	-0.37949								0	0	0	0.89672	1	7232	7232		20.415	3.3016	1			+	15169	569	9227	9278	14562	14562					-0.031898037103019306
INSRKLQQR	9	Unmodified	_INSRKLQQR_					0	0	0			REV__ENST00000354300.4_1_12:110974620-110974755:-|nuORF	REV__ENST00000354300.4_1_12:110974620-110974755:-|nuORF	MSMS	HCT116MG_D190212_S4	4	571.8395385742188	2	571.841271	1141.66799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.543	1	58.26	57.76	58.76	-0.28305								0	0	0	0.76978	1	22007	22007		1.6526	0.17072	1		+		15170	15028	9228	9279	14563	14563					0.10282132614361217
INTMNGMLLN	10	Unmodified	_INTMNGMLLN_					0	0	0		nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000101104|Q4VXU2-2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	MSMS	HCT116MG_D190212_S3	3	561.0785522460938	2	560.778102	1119.54165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.623	1	52.317	51.817	52.817	-0.30639								0	0	0	0.91971	1	19898	19898		11.495	2.1116	1				15171	1752	9229	9280	14564	14564					-0.013338779974219506
INTVKKKKKRE	11	Unmodified	_INTVKKKKKRE_					0	0	0			REV__ENST00000564111.5_1_16:12070663-12146080:+|nuORF	REV__ENST00000564111.5_1_16:12070663-12146080:+|nuORF	MSMS	HCT116MG_D190212_S2	2	686.4449462890625	2	686.44336	1370.87217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.623	1	56.44	55.94	56.94	-0.18261								0	0	0	0.95196	1	21851	21851		5.2969	2.3016	1		+		15172	10609	9230	9281	14565	14565					0.20156651985030294
INTYNCRCPPQ	11	Unmodified	_INTYNCRCPPQ_					0	0	0		NOTCH2|p.V279I|1|0.31|ENSG00000134250|chr1:119986999-119986999|C/T|missense_variant	NOTCH2|p.V279I|1|0.31|ENSG00000134250|chr1:119986999-119986999|C/T|missense_variant	NOTCH2|p.V279I|1|0.31|ENSG00000134250|chr1:119986999-119986999|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	654.7939453125	2	654.794814	1307.57508	0.52448	0.00034343	-0.65719	-0.00043033	-0.13271	-8.6896E-05	654.7945013939774	16.793	0.72847	16.877	16.548	17.277	0.084467					20	13	3	0	0	0	0.72419	1	5618	5618		12.873	0	1	1920100			15173	9701	9231	9282	14566	14566					-0.06640876225537795
INVALFILY	9	Unmodified	_INVALFILY_					0	0	0		MARVELD2|p.P430Qfs*9|1|0.14|ENSG00000152939|chr5:69432628-69432628|C/-|frameshift_variant;nc|ENSG00000152939|Q8N4S9-2|MARVELD2;MARVELD2|p.E527Rfs*4|1|0.32|ENSG00000152939|chr5:69441547-69441548|-/A|frameshift_variant;MARVELD2|p.E527Nfs*6|2|0.3|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant;nc|ENSG00000152939|Q8N4S9-3|MARVELD2;ENSG00000152939|ENST00000325631|MARVELD2	MARVELD2|p.P430Qfs*9|1|0.14|ENSG00000152939|chr5:69432628-69432628|C/-|frameshift_variant	MARVELD2|p.P430Qfs*9|1|0.14|ENSG00000152939|chr5:69432628-69432628|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	533.3219604492188	2	533.320786	1064.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.395	1	48.252	47.752	48.752	-0.1437								0	0	0	0.76575	1	18489	18489		15.847	4.2069	1				15174	4167	9232	9283	14567	14567					0.09728978522184661
INVANSENFI	10	Unmodified	_INVANSENFI_					0	0	0		tr|U7SKN1|U7SKN1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02084PE=4SV=1	tr|U7SKN1|U7SKN1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02084PE=4SV=1	tr|U7SKN1|U7SKN1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02084PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	560.3277587890625	2	560.785296	1119.55604	0.18169	0.00010189	0.21009	0.00011782	0.39179	0.00021971	560.7854105523785	37.82	0.20599	37.727	37.599	37.805	-0.09301					5	3	2	0	0	0	0.30738	1	14218	14218		5.7319	0	1	19150000			15175	18328	9233	9284	14568	14568					0.0010423374671972852
INVERALKV	9	Unmodified	_INVERALKV_					0	0	0		FBXL7|p.D167E|1|0.36|ENSG00000183580|chr5:15928263-15928263|C/A|missense_variant	FBXL7|p.D167E|1|0.36|ENSG00000183580|chr5:15928263-15928263|C/A|missense_variant	FBXL7|p.D167E|1|0.36|ENSG00000183580|chr5:15928263-15928263|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	521.3263549804688	2	521.324391	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.75	1	56.75	56.25	57.25	0								0	0	0	0.52331	1	21824	21824		27.629	13.223	1				15176	9155	9234	9285	14569	14569					0.11553711122610366
INVHLRKDF	9	Unmodified	_INVHLRKDF_					0	0	0		ENSG00000113643|ENST00000231572|RARS1;nc|ENSG00000113643|P54136-2|RARS1;ENST00000521939.5_1_5:167913503-167921691:+|nuORF	ENSG00000113643|ENST00000231572|RARS1	ENSG00000113643|ENST00000231572|RARS1	MSMS	HCT116MG_D190212_S1	1	571.32666015625	2	571.327465	1140.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.352	1	50.352	49.852	50.852	0								0	0	0	0.768	1	19210	19210		7.9102	0.62092	1				15177	2399	9235	9286	14570	14570					0.07568229354114919
INVKHLKYY	9	Unmodified	_INVKHLKYY_					0	0	0			REV__CPQ|p.Q348K|1|0.3|ENSG00000104324|chr8:97029483-97029483|C/A|missense_variant	REV__CPQ|p.Q348K|1|0.3|ENSG00000104324|chr8:97029483-97029483|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	589.0770874023438	2	589.340041	1176.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.958	1	48.804	48.304	49.304	-0.15405								0	0	0	0.76694	1	18722	18722		11.64	4.9171	1		+		15178	10286	9236	9287	14571	14571					0.08426284156712427
INVKSSPQTI	10	Unmodified	_INVKSSPQTI_					0	0	0			REV__ENSG00000109674|ENST00000264596|NEIL3	REV__ENSG00000109674|ENST00000264596|NEIL3	MSMS	HCT116MG_D190212_S2	2	543.8114013671875	2	543.811313	1085.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.682	1	48.538	48.038	49.038	-0.1437								0	0	0	0.80906	1	18607	18607		27.629	0.74515	1		+		15179	11378	9237	9288	14572	14572					0.06869397160471635
INVNMLIKVH	10	Unmodified	_INVNMLIKVH_					0	0	0			REV__ENST00000407925.5_1_2:33534602-33540264:+|nuORF	REV__ENST00000407925.5_1_2:33534602-33540264:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	591.3463134765625	2	590.847176	1179.6798	0.46093	0.00027234	-3.0638	-0.0018102	-2.6028	-0.0015379	591.3462111162943	51.054	0.31036	51.054	50.884	51.194	0					8	5	2	0	0	0	0.86862	1	19428	19428		6.2058	1.8765	1	18505000	+		15180	15428	9238	9289	14573	14573					0.09714613313349219
INVRPDVPLP	10	Unmodified	_INVRPDVPLP_					0	0	0			REV__PXDN|p.C857Afs*5|2|0.33|ENSG00000130508|chr2:1649212-1649212|G/-|frameshift_variant	REV__PXDN|p.C857Afs*5|2|0.33|ENSG00000130508|chr2:1649212-1649212|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	560.3275756835938	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.452	1	48.136	47.636	48.636	-0.31596								0	0	0	0.93854	1	18223	18223		7.2892	0.56607	1		+		15181	11925	9239	9290	14574	14574					0.09021693777026485
INVSDAPLA	9	Unmodified	_INVSDAPLA_					0	0	0			REV__CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant	REV__CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	450.246337890625	2	450.245275	898.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.778	1	49.463	48.963	49.963	-0.31537								0	0	0	0.76902	1	18754	18754		4.3292	1.7518	1		+		15182	10311	9240	9291	14575	14575					0.02269792143522409
INWSDPTLL	9	Unmodified	_INWSDPTLL_					0	0	0			REV__SOBP|p.P463Rfs*31|1|0.33|ENSG00000112320|chr6:107634227-107634227|C/-|frameshift_variant	REV__SOBP|p.P463Rfs*31|1|0.33|ENSG00000112320|chr6:107634227-107634227|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7796020507812	2	529.779482	1057.54441	0.50994	0.00027016	-0.35982	-0.00019063	0.15012	7.9532E-05	529.7793763106024	57.412	0.25991	57.237	57.055	57.315	-0.17494					10	4	4	0	0	0	0.45867	1	22192	22192		19.257	1.122	1	33641000	+		15183	11457	9241	9292	14576	14576					0.017940367233904908
INYDEFLEFMK	11	Unmodified	_INYDEFLEFMK_					0	0	0		TNNC1|p.D149N|1|0.41|ENSG00000114854|chr3:52451400-52451400|C/T|missense_variant	TNNC1|p.D149N|1|0.41|ENSG00000114854|chr3:52451400-52451400|C/T|missense_variant	TNNC1|p.D149N|1|0.41|ENSG00000114854|chr3:52451400-52451400|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	724.8414306640625	2	724.841953	1447.66935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.185	1	15.185	14.685	15.685	0								0	0	0	0.95581	1	5027	5027		3.2813	0	1				15184	18279	9242	9293	14577	14577					-0.036574589224301235
INYNPSEIYI	10	Unmodified	_INYNPSEIYI_					0	0	0		tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1	tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1	tr|U7ST05|U7ST05_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01663PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	409.20867919921875	3	409.208161	1224.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.652	1	27.652	27.152	28.152	0								0	0	0	0.92272	1	10043	10043		6.1918	0	1				15185	18427	9243	9294	14578	14578					-0.000663264219838311
IPCQECPKNW	10	Unmodified	_IPCQECPKNW_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MSMS	HCT116MG_D190212_S1	1	406.52056884765625	3	406.519576	1216.5369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.088	1	10.088	9.5877	10.588	0								0	0	0	0.96521	1	3080	3080		0.56317	0.10865	1		+		15186	13090	9244	9295	14579	14579					-0.06270762140206898
IPCRWQLQRPT	11	Unmodified	_IPCRWQLQRPT_					0	0	0			REV__ENST00000374869.7_2_X:63411649-63411688:-|nuORF	REV__ENST00000374869.7_2_X:63411649-63411688:-|nuORF	MSMS	HCT116MG_D190212_S3	3	699.4115600585938	2	699.377163	1396.73977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.589	1	30.34	29.84	30.84	-0.24946								0	0	0	0.94416	1	11144	11144		9.3831	2.66	1		+		15187	15205	9245	9296	14580	14580					0.05727303976550502
IPDESQAHLR	10	Unmodified	_IPDESQAHLR_					0	0	0		ENST00000296525.7_1_4:177190288-177190342:-|nuORF	ENST00000296525.7_1_4:177190288-177190342:-|nuORF	ENST00000296525.7_1_4:177190288-177190342:-|nuORF	MSMS	HCT116MG_D190212_S1	1	583.5828857421875	2	583.301644	1164.58874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.81	1	27.81	27.31	28.31	0								0	0	0	0.87399	1	10107	10107		19.257	3.4098	1				15188	6983	9246	9297	14581	14581					0.013024408695628154
IPDHHLRPPLG	11	Unmodified	_IPDHHLRPPLG_					0	0	0		ENST00000474895.6_2_9:132630622-132637162:+|nuORF	ENST00000474895.6_2_9:132630622-132637162:+|nuORF	ENST00000474895.6_2_9:132630622-132637162:+|nuORF	MSMS	HCT116MG_D190212_S3	3	626.3515014648438	2	626.351471	1250.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.278	1	34.979	34.479	35.479	-0.29922								0	0	0	0.94924	1	13016	13016		6.7232	0.99131	1				15189	8193	9247	9298	14582	14582					0.07307303274160404
IPDKENVP	8	Unmodified	_IPDKENVP_					0	0	0		nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	MSMS	HCT116MG_D190212_S4	4	456.2442932128906	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.614	1	46.243	45.743	46.743	-0.37134								0	0	0	0.8837	1	17215	17215		10.183	1.5901	1				15190	9400	9248	9299	14583	14583					0.017177921435290955
IPEASFLE	8	Unmodified	_IPEASFLE_					0	0	0		ENSG00000105700|ENST00000222307|KXD1	ENSG00000105700|ENST00000222307|KXD1	ENSG00000105700|ENST00000222307|KXD1	MSMS	HCT116MG_D190212_S4	4	453.2342834472656	2	453.234376	904.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.724	1	55.412	54.912	55.912	-0.312								0	0	0	0.8837	1	20873	20873		9.3474	2.9933	1				15191	2028	9249	9300	14584	14584					-0.00185012605038537
IPEPRWDP	8	Unmodified	_IPEPRWDP_					0	0	0		ENST00000217398.3_1_20:32295514-32298573:-|nuORF;ENSG00000101417|ENST00000409299|PXMP4	ENST00000217398.3_1_20:32295514-32298573:-|nuORF	ENST00000217398.3_1_20:32295514-32298573:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	505.76129150390625	2	505.258717	1008.50288	0.21709	0.00010969	-0.53338	-0.0002695	-0.31629	-0.00015981	505.7613944307946	40.297	0.77692	39.995	39.699	40.476	-0.30161					35	14	4	0	0	0	0.50777	1	14913	14913		40.449	12.275	1	25886000			15192	1789	9250	9301	14585	14585					-0.0010309924529110503
IPGGHVGP	8	Unmodified	_IPGGHVGP_					0	0	0		HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|263|2|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|263|2|anti-sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|263|2|anti-sense	MULTI-MSMS	HCT116MG_D190212_S2	2	733.3997802734375	1	733.39915	732.391873	1.2459	0.00091372	0.33779	0.00024773	1.5837	0.0011615	733.3993359237703	31.499	0.25899	31.25	31.095	31.354	-0.24883					8	4	2	0	0	0	0.75115	1	11640	11640		17.087	0	1	11690000			15193	9215	9251	9302	14586	14586					0.014973058372902415
IPGKMVKG	8	Unmodified	_IPGKMVKG_					0	0	0		nc|ENSG00000083720|P55809-2|OXCT1;ENSG00000083720|ENST00000196371|OXCT1	nc|ENSG00000083720|P55809-2|OXCT1	nc|ENSG00000083720|P55809-2|OXCT1	MSMS	HCT116MG_D190212_S4	4	415.2533264160156	2	415.251849	828.489145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.341	1	46.971	46.471	47.471	-0.37038								0	0	0	0.8837	1	17508	17508		2.8892	0	1				15194	1434	9252	9303	14587	14587					0.06803951721929025
IPHPRTPRPPP	11	Unmodified	_IPHPRTPRPPP_					0	0	0		ENST00000373314.7_1_9:130267625-130268042:-|nuORF	ENST00000373314.7_1_9:130267625-130268042:-|nuORF	ENST00000373314.7_1_9:130267625-130268042:-|nuORF	MSMS	HCT116MG_D190212_S4	4	422.2491455078125	3	422.247285	1263.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.686	1	36.301	35.801	36.801	-0.38486								0	0	0	0.95521	1	13435	13435		1.4551	0	1				15195	7477	9253	9304	14588	14588					0.098712960281091
IPIAMYHINK	10	Unmodified	_IPIAMYHINK_					0	0	0		NUP210L|p.F928Sfs*10|1|0.1|ENSG00000143552|chr1:154060607-154060608|-/CTTGTTACAG|frameshift_variant;NUP210L|p.F959Lfs*32|1|0.36|ENSG00000143552|chr1:154058667-154058667|A/-|frameshift_variant;nc|ENSG00000143552|Q5VU65-2|NUP210L;NUP210L|p.F1858Lfs*11|1|0.38|ENSG00000143552|chr1:153992928-153992928|A/-|frameshift_variant;ENSG00000143552|ENST00000368559|NUP210L	NUP210L|p.F928Sfs*10|1|0.1|ENSG00000143552|chr1:154060607-154060608|-/CTTGTTACAG|frameshift_variant	NUP210L|p.F928Sfs*10|1|0.1|ENSG00000143552|chr1:154060607-154060608|-/CTTGTTACAG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	600.3336791992188	2	600.333901	1198.65325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.199	1	47.832	47.332	48.332	-0.36728								0	0	0	0.92272	1	17843	17843		10.824	0	1				15196	3819	9254	9305	14589	14589					0.06186924421990625
IPILLLKFKNK	11	Unmodified	_IPILLLKFKNK_					0	0	0			REV__tr|U7SVB5|U7SVB5_FUSNUCAAXaminoterminalproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01202PE=4SV=1	REV__tr|U7SVB5|U7SVB5_FUSNUCAAXaminoterminalproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01202PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	663.9473876953125	2	663.947216	1325.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.167	1	34.868	34.368	35.368	-0.29874								0	0	0	0.95954	1	12971	12971		1.3295	0.13619	1		+		15197	17842	9255	9306	14590	14590					0.2299741125257242
IPIPGRNITYF	11	Unmodified	_IPIPGRNITYF_					0	0	0		ENST00000439585.1_1_X:67991699-67992065:+|nuORF	ENST00000439585.1_1_X:67991699-67992065:+|nuORF	ENST00000439585.1_1_X:67991699-67992065:+|nuORF	MSMS	HCT116MG_D190212_S1	1	430.9134826660156	3	430.911679	1289.71321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.696	1	13.696	13.196	14.196	0								0	0	0	0.96149	1	4455	4455		0.08335	0.010087	1				15198	7910	9256	9307	14591	14591					0.07993938356889885
IPKSKASGAPP	11	Unmodified	_IPKSKASGAPP_					0	0	0		ENSG00000176058|ENST00000409012|TPRN;nc|ENSG00000176058|Q4KMQ1-2|TPRN;nc|ENSG00000176058|Q4KMQ1-4|TPRN;nc|ENSG00000176058|Q4KMQ1-3|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7483520507812	2	526.808574	1051.60259	0.32748	0.00017252	-0.26644	-0.00014036	0.061041	3.2157E-05	526.8084807957925	30.772	1.4082	30.512	30.239	31.648	-0.26071					48	30	2	0	0	0	0.60935	1	11553	11553		34.402	1.616	1	5818800			15199	5403	9257	9308	14592	14592					0.07885718368675043
IPKSKKKKD	9	Unmodified	_IPKSKKKKD_					0	0	0			REV__ENST00000483685.5_1_2:219487553-219498591:+|nuORF	REV__ENST00000483685.5_1_2:219487553-219498591:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	536.347900390625	2	536.347866	1070.68118	0.32399	0.00017377	0.014974	8.0313E-06	0.33897	0.0001818	536.3477381086524	58.409	0.3542	58.409	58.261	58.615	0					14	6	3	0	0	0	0.74917	1	22549	22549		1.8442	0.19162	1	31473000	+		15200	11548	9258	9309	14593	14593					0.1486657067375745
IPKTQFLQP	9	Unmodified	_IPKTQFLQP_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MSMS	HCT116MG_D190212_S2	2	357.67657470703125	3	357.878087	1070.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.221	1	23.841	23.341	24.341	-0.38003								0	0	0	0.76669	1	8670	8670		8.1555	3.108	1				15201	1205	9259	9310	14594	14594					0.07994906374028687
IPKYVRSFT	9	Unmodified	_IPKYVRSFT_					0	0	0			REV__ZNF331|p.L258P|1|0.08|ENSG00000130844|chr19:53577333-53577333|T/C|missense_variant	REV__ZNF331|p.L258P|1|0.08|ENSG00000130844|chr19:53577333-53577333|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	555.7365112304688	2	555.818941	1109.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.753	1	21.753	21.253	22.253	0								0	0	0	0.768	1	7668	7668		7.9102	0.62092	1		+		15202	18078	9260	9311	14595	14595					0.0729030874831551
IPLAIIEAKK	10	Unmodified	_IPLAIIEAKK_					0	0	0		tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	tr|U7SQT4|U7SQT4_FUSNUtypeIsite-specificdeoxyribonucleaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01572PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	548.3626708984375	2	548.360442	1094.70633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.343	1	52.035	51.535	52.535	-0.30793								0	0	0	0.94746	1	19785	19785		5.2969	0.066215	1				15203	18393	9261	9312	14596	14596					0.16276625476302797
IPLLRKLAAV	10	Unmodified	_IPLLRKLAAV_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MSMS	HCT116MG_D190212_S2	2	365.2530212402344	3	365.253376	1092.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.534	1	58.364	57.864	58.864	-0.1703								0	0	0	0.97045	1	22625	22625		0.15932	0	1		+		15204	14137	9262	9313	14597	14597					0.19564037950090096
IPMLKIVF	8	Unmodified	_IPMLKIVF_					0	0	0		nc|ENSG00000120519|Q0GE19-3|SLC10A7;ENSG00000120519|ENST00000335472|SLC10A7;nc|ENSG00000120519|Q0GE19-1|SLC10A7	nc|ENSG00000120519|Q0GE19-3|SLC10A7	nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-MSMS	HCT116MG_D190212_S3	3	480.8012390136719	2	480.801174	959.587796	0.2063	9.9191E-05	0.063595	3.0577E-05	0.2699	0.00012977	480.8010860061331	51.83	1.9596	51.52	51.017	52.977	-0.30927					88	37	4	0	0	0	0.84415	1	20025	20025		6.3541	0	1	138490000			15205	2701	9263	9314	14598	14598					0.10638554966976699
IPPLTQTPV	9	Unmodified	_IPPLTQTPV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S3	3	483.28741455078125	2	483.286943	964.559333	0.33684	0.00016279	0.77816	0.00037607	1.115	0.00053887	483.2873446313877	44.952	0.70317	44.643	44.394	45.098	-0.30927					23	14	2	0	0	0	0.11731	1	16874	16874		54.774	2.5052	1	3873900		+	15206	549	9264	9315	14599	14599					0.07563528591390423
IPPSVPPIAP	10	Unmodified	_IPPSVPPIAP_					0	0	0		MED14|p.A1346V|2|0.4|ENSG00000180182|chrX:40654996-40654996|G/A|missense_variant	MED14|p.A1346V|2|0.4|ENSG00000180182|chrX:40654996-40654996|G/A|missense_variant	MED14|p.A1346V|2|0.4|ENSG00000180182|chrX:40654996-40654996|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	494.2977294921875	2	494.29731	986.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.649	1	41.273	40.773	41.773	-0.37637								0	0	0	0.80241	1	15283	15283		28.487	6.7402	1				15207	9325	9265	9316	14600	14600					0.08624118971044936
IPQLFYKV	8	Unmodified	_IPQLFYKV_					0	0	0			REV__L1MB2_dup2034|chr4:98891323-98891802:+|1.234255234257108|0.2358614318871796|2.39|479.0|28|2|anti-sense	REV__L1MB2_dup2034|chr4:98891323-98891802:+|1.234255234257108|0.2358614318871796|2.39|479.0|28|2|anti-sense	MSMS	HCT116MG_D190212_S4	4	504.30145263671875	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.853	1	42.478	41.978	42.978	-0.37493								0	0	0	0.8837	1	15765	15765		5.2307	0.47466	1		+		15208	16941	9266	9317	14601	14601					0.08212422833662458
IPRCHRVHWDL	11	Unmodified	_IPRCHRVHWDL_					0	0	0			REV__ENST00000572418.1_1_17:3801110-3806945:-|nuORF	REV__ENST00000572418.1_1_17:3801110-3806945:-|nuORF	MSMS	HCT116MG_D190212_S1	1	716.3753051757812	2	716.374955	1430.73536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.2	1	33.2	32.7	33.7	0								0	0	0	0.95581	1	12278	12278		3.2813	0.28607	1		+		15209	11344	9267	9318	14602	14602					0.0372183955366836
IPRLNKTRYRK	11	Unmodified	_IPRLNKTRYRK_					0	0	0			REV__ENST00000510825.5_1_4:16743128-16900108:-|nuORF	REV__ENST00000510825.5_1_4:16743128-16900108:-|nuORF	MSMS	HCT116MG_D190212_S2	2	723.3931274414062	2	722.946602	1443.87865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.247	1	57.068	56.568	57.568	-0.17904								0	0	0	0.95113	1	22101	22101		5.7319	2.4505	1		+		15210	16178	9268	9319	14603	14603					0.174465899363895
IPRVPAGAP	9	Unmodified	_IPRVPAGAP_					0	0	0		ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	MSMS	HCT116MG_D190212_S1	1	439.5288391113281	2	439.266345	876.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.945	1	17.945	17.445	18.445	0								0	0	0	0.7676	1	6139	6139		9.3474	2.9933	1				15211	7811	9269	9320	14604	14604					0.07493812342556794
IPSDQVQKKI	10	Unmodified	_IPSDQVQKKI_					0	0	0		ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	MSMS	HCT116MG_D190212_S1	1	578.3387451171875	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.945	1	32.945	32.445	33.445	0								0	0	0	0.95507	1	12175	12175		3.5965	0.31518	1				15212	5424	9270	9321	14605	14605					0.09477659085905543
IPSEQGPASP	10	Unmodified	_IPSEQGPASP_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	HCT116MG_D190212_S2	2	491.7720947265625	2	491.745639	981.476725	0.33988	0.00016714	-0.033246	-1.6349E-05	0.30664	0.00015079	491.74559394829606	24.957	0.31133	24.582	24.452	24.764	-0.37521					8	5	2	0	0	0	0.75427	1	8943	8943		15.847	3.3156	1	14696000	+		15213	13131	9271	9322	14606	14606					-0.014754132074244808
IPSSKLIQGP	10	Unmodified	_IPSSKLIQGP_					0	0	0			REV__ENST00000368178.3_1_1:157718396-157736689:-|nuORF	REV__ENST00000368178.3_1_1:157718396-157736689:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	520.3327026367188	2	520.310949	1038.60735	0.38056	0.00019801	0.10691	5.5628E-05	0.48747	0.00025364	520.310957945096	41.903	0.31105	41.834	41.705	42.016	-0.068199					11	5	3	0	0	0	0.3029	1	15894	15894		3.5965	0	1	58715000	+		15214	15129	9272	9323	14607	14607					0.08958602511438585
IPSTSTDQPSH	11	Unmodified	_IPSTSTDQPSH_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	MULTI-SECPEP	HCT116MG_D190212_S3	3	584.7471313476562	2	585.275292	1168.53603	0.20449	0.00011968	0.33759	0.00019758	0.54208	0.00031727	585.275602438081	17.684	0.83243	17.765	17.273	18.106	0.081358					17	15	2	0	0	0	0.34819	1	6043	6043		18.373	0	1	1324800	+		15215	11111	9273	9324	14608	14608					-0.0414956198389973
IPTDEEPL	8	Unmodified	_IPTDEEPL_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	HCT116MG_D190212_S3	3	457.2294006347656	2	457.22929	912.444028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.541	1	42.237	41.737	42.737	-0.30352								0	0	0	0.8837	1	15850	15850		11.114	0	1		+		15216	12129	9274	9325	14609	14609					-0.015696203302923095
IPTQQFMNYFR	11	Unmodified	_IPTQQFMNYFR_					0	0	0		ENSG00000152270|ENST00000282096|PDE3B;nc|ENSG00000152270|Q13370-2|PDE3B	ENSG00000152270|ENST00000282096|PDE3B	ENSG00000152270|ENST00000282096|PDE3B	MSMS	HCT116MG_D190212_S4	4	722.857421875	2	722.855729	1443.69691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.698	1	48.331	47.831	48.831	-0.36728								0	0	0	0.93456	1	18042	18042		14.405	1.5328	1				15217	4145	9275	9326	14610	14610					-0.0071951087152228865
IPTVHTSP	8	Unmodified	_IPTVHTSP_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MSMS	HCT116MG_D190212_S4	4	426.7179870605469	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.381	1	32.001	31.501	32.501	-0.37924								0	0	0	0.75335	1	11791	11791		26.341	1.6674	1				15218	5714	9276	9327	14611	14611					0.023658268346594014
IPVPMPVP	8	Unmodified	_IPVPMPVP_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.D1229Ifs*2|1|0.12|ENSG00000146463|chr1:35405175-35405175|G/-|frameshift_variant;ZMYM4|p.N1222Kfs*15|1|0.25|ENSG00000146463|chr1:35405154-35405155|-/A|frameshift_variant	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MSMS	HCT116MG_D190212_S4	4	425.2493591308594	2	425.248775	848.482997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.918	1	32.537	32.037	33.037	-0.38184								0	0	0	0.8837	1	12009	12009		11.114	0	1				15219	3951	9277	9328	14612	14612					0.052694334903890194
IPVTSKNAIWK	11	Unmodified	_IPVTSKNAIWK_					0	0	0		ASB15|p.R305W|1|0.11|ENSG00000146809|chr7:123628907-123628907|C/T|missense_variant	ASB15|p.R305W|1|0.11|ENSG00000146809|chr7:123628907-123628907|C/T|missense_variant	ASB15|p.R305W|1|0.11|ENSG00000146809|chr7:123628907-123628907|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	628.869140625	2	628.871705	1255.72886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.503	1	43.128	42.628	43.628	-0.37433								0	0	0	0.94284	1	15993	15993		10.074	3.3508	1				15220	198	9278	9329	14613	14613					0.11122224873929554
IPWRGTPD	8	Unmodified	_IPWRGTPD_					0	0	0			REV__ENST00000420513.1_1_1:16921449-16935018:-|nuORF	REV__ENST00000420513.1_1_1:16921449-16935018:-|nuORF	MSMS	HCT116MG_D190212_S4	4	471.24481201171875	2	471.245609	940.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.949	1	41.573	41.073	42.073	-0.37637								0	0	0	0.8837	1	15399	15399		10.183	0	1		+		15221	15518	9279	9330	14614	14614					0.00404631583239734
IPYCYWKYRKW	11	Unmodified	_IPYCYWKYRKW_					0	0	0		ENST00000580030.1_1_17:57642998-57644117:+|nuORF	ENST00000580030.1_1_17:57642998-57644117:+|nuORF	ENST00000580030.1_1_17:57642998-57644117:+|nuORF	MSMS	HCT116MG_D190212_S4	4	803.4041748046875	2	803.405389	1604.79623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.216	1	37.833	37.333	38.333	-0.38283								0	0	0	0.96141	1	13998	13998		0.35063	0.043601	1				15222	8951	9280	9331	14615	14615					0.01801931813201918
IPYFLVLLVK	10	Unmodified	_IPYFLVLLVK_					0	0	0			REV__nc|ENSG00000138039|P22888-2|LHCGR	REV__nc|ENSG00000138039|P22888-2|LHCGR	MSMS	HCT116MG_D190212_S2	2	402.25958251953125	3	402.261649	1203.76312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.22	1	43.146	42.646	43.646	-0.073376								0	0	0	0.95381	1	16381	16381		3.8763	1.2451	1		+		15223	12206	9281	9332	14616	14616					0.16938673032814222
IQDLIYFVRYK	11	Unmodified	_IQDLIYFVRYK_					0	0	0		ENST00000470521.1_1_1:222791452-222819114:+|nuORF;MIA3|p.P1645Yfs*19|1|0.06|ENSG00000154305|chr1:222659963-222659964|-/TATAG|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MSMS	HCT116MG_D190212_S2	2	729.4148559570312	2	729.411195	1456.80784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.14	1	46.039	45.539	46.539	-0.1014								0	0	0	0.89672	1	17567	17567		20.415	8.9198	1				15224	4214	9282	9333	14617	14617					0.097704521082278
IQEEEQNFKK	10	Unmodified	_IQEEEQNFKK_					0	0	0		nc|ENSG00000179046|Q8N7C3-2|TRIML2;ENST00000511771.1_1_4:189020146-189026726:-|nuORF;TRIML2|p.H377Tfs*6|1|0.06|ENSG00000179046|chr4:188091408-188091409|-/T|frameshift_variant;ENSG00000179046|ENST00000682553|TRIML2	nc|ENSG00000179046|Q8N7C3-2|TRIML2	nc|ENSG00000179046|Q8N7C3-2|TRIML2	MULTI-SECPEP	HCT116MG_D190212_S1	1	646.8272705078125	2	646.827692	1291.64083	-0.067643	-4.3753E-05	-0.57409	-0.00037134	-0.64173	-0.00041509	647.3285960265404	38.386	0.20865	38.386	38.279	38.488	0					5	3	2	0	0	0	0.23765	1	14393	14393		49.554	5.5724	1	9860000			15225	5531	9283	9334	14618	14618					0.006675594926264239
IQEMLRNYMYE	11	Unmodified	_IQEMLRNYMYE_					0	0	0		DNAH7|p.I2236M|1|0.33|ENSG00000118997|chr2:195864947-195864947|A/C|missense_variant	DNAH7|p.I2236M|1|0.33|ENSG00000118997|chr2:195864947-195864947|A/C|missense_variant	DNAH7|p.I2236M|1|0.33|ENSG00000118997|chr2:195864947-195864947|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	745.3458862304688	2	745.344337	1488.67412	0.63843	0.00047585	0.081857	6.1011E-05	0.72029	0.00053686	745.3446098085057	38.364	0.23737	37.981	37.812	38.049	-0.38283					6	4	2	0	0	0	0.74111	1	14066	14066		12.241	0	1	3507000			15226	707	9284	9335	14619	14619					-0.05066898051268254
IQFWIAAVIF	10	Unmodified	_IQFWIAAVIF_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MSMS	HCT116MG_D190212_S2	2	403.2328186035156	3	403.233982	1206.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6488	1	5.5007	5.0007	6.0007	-0.14816								0	0	0	0.97045	1	1789	1789		0.15932	0	1				15227	4183	9285	9336	14620	14620					0.08504356304820249
IQGALSAY	8	Unmodified	_IQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	HCT116MG_D190212_S2	2	822.6544189453125	1	822.435595	821.428318	0.64865	0.00053347	0.24866	0.0002045	0.89731	0.00073798	822.4357048095555	38.031	0.46541	37.938	37.753	38.219	-0.09301					20	8	4	0	0	0	0.068362	2	14304	14257;14304		103.75	22.135	1	209610000			15228	6260	9286	9337	14621;14622	14622					0.010461379433195361
IQGALSAY	8	Unmodified	_IQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	HCT116MG_D190212_S3	3	822.4364013671875	1	822.435595	821.428318	0.94361	0.00077606	-0.0064451	-5.3007E-06	0.93716	0.00077076	822.4354673630235	38.212	0.41473	37.911	37.729	38.144	-0.30137					13	7	2	0	0	0	0.094591	1	14148	14148		96.285	14.672	1	25657000			15229	6260	9286	9337	14623	14623					0.010461379433195361
IQGALSAY	8	Unmodified	_IQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	822.435595	821.428318	0.63241	0.00052012	0.48432	0.00039833	1.1167	0.00091844	822.4357959951026	38.364	0.2833	37.981	37.812	38.095	-0.38283	0.03781	0.00021121	NaN	103.75	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2676800			15230	6260	9286	9337							0.010461379433195361
IQHNNTDAVY	10	Unmodified	_IQHNNTDAVY_					0	0	0			REV__ENSG00000196865|ENST00000369301|NHLRC2	REV__ENSG00000196865|ENST00000369301|NHLRC2	MULTI-MSMS	HCT116MG_D190212_S3	3	587.7781982421875	2	587.778002	1173.54145	0.38549	0.00022658	-0.12211	-7.1775E-05	0.26337	0.00015481	587.77801554833	34.623	0.8838	34.326	33.816	34.7	-0.29707					25	16	2	0	0	0	0.76143	1	12672	12672		15.248	2.206	1	4556200	+		15231	14050	9287	9338	14624	14624					-0.03837838401409499
IQHNNTDAVY	10	Unmodified	_IQHNNTDAVY_					0	0	0			REV__ENSG00000196865|ENST00000369301|NHLRC2	REV__ENSG00000196865|ENST00000369301|NHLRC2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	587.778002	1173.54145	0.38549	0.00022658	-0.12211	-7.1775E-05	0.26337	0.00015481	587.77801554833	34.623	0.8838	34.326	33.816	34.7	-0.29707	0.0027932	7.5298E-05	NaN	15.248	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4556200	+		15232	14050	9287	9338							-0.03837838401409499
IQKIVQKP	8	Unmodified	_IQKIVQKP_					0	0	0			REV__ENSG00000197782|ENST00000683561|ZNF780A	REV__ENSG00000197782|ENST00000683561|ZNF780A	MSMS	HCT116MG_D190212_S2	2	477.2566223144531	2	477.310752	952.606951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.57	1	33.377	32.877	33.877	-0.19297								0	0	0	0.8837	1	12461	12461		8.5933	2.8329	1		+		15233	14090	9288	9339	14625	14625					0.12875227582219395
IQKTYIQI	8	Unmodified	_IQKTYIQI_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM;FANCM|p.K331Nfs*4|1|0.13|ENSG00000187790|chr14:45151468-45151468|A/-|frameshift_variant;nc|ENSG00000187790|Q8IYD8-2|FANCM;FANCM|p.E869Rfs*3|1|0.21|ENSG00000187790|chr14:45175352-45175353|-/A|frameshift_variant	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MULTI-SECPEP	HCT116MG_D190212_S2	2	504.2852478027344	2	503.800217	1005.58588	0.77062	0.00038824	-0.73347	-0.00036952	0.037152	1.8717E-05	503.7997138995291	47.974	0.25617	47.841	47.636	47.892	-0.13281					5	4	2	0	0	0	0.25894	1	18263	18263		34.187	14.748	1	15219000			15234	5959	9289	9340	14626	14626					0.08331217482702868
IQLYEMYFKDP	11	Unmodified	_IQLYEMYFKDP_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant;CHD7|p.G2228Lfs*52|1|0.03|ENSG00000171316|chr8:60853406-60853407|-/TTGCCTTC|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	724.3551025390625	2	723.852321	1445.69009	0.52506	0.00038007	0.21203	0.00015348	0.73709	0.00053355	723.8523904835491	22.351	0.52108	22.351	22.042	22.563	0.00074577					12	9	2	0	0	0	0.36468	1	7889	7889		7.1017	1.8048	1	2237000			15235	430	9290	9341	14627	14627					-0.014928685427776145
IQNERTYEVPD	11	Unmodified	_IQNERTYEVPD_					0	0	0		nc|ENSG00000112782|Q9NZA1|CLIC5	nc|ENSG00000112782|Q9NZA1|CLIC5	nc|ENSG00000112782|Q9NZA1|CLIC5	MULTI-MSMS	HCT116MG_D190212_S2	2	682.3285522460938	2	682.328056	1362.64156	0.32697	0.0002231	0.34028	0.00023218	0.66725	0.00045529	682.3279989250067	26.829	0.31306	26.477	26.293	26.606	-0.35254					11	5	3	0	0	0	0.63585	1	9727	9727		45.74	20.749	1	68998000			15236	9430	9291	9342	14628	14628					-0.02525645858304415
IQNERTYEVPD	11	Unmodified	_IQNERTYEVPD_					0	0	0		nc|ENSG00000112782|Q9NZA1|CLIC5	nc|ENSG00000112782|Q9NZA1|CLIC5	nc|ENSG00000112782|Q9NZA1|CLIC5	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	682.328056	1362.64156	0.78711	0.00053707	-0.24314	-0.0001659	0.54397	0.00037117	682.3277946775543	26.475	0.2601	26.475	26.345	26.605	0	-0.0010028	-0.00014013	NaN	45.74	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32857000			15237	9430	9291	9342							-0.02525645858304415
IQNGTRLEP	9	Unmodified	_IQNGTRLEP_					0	0	0		nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-5|IL1RAP	MULTI-MSMS	HCT116MG_D190212_S4	4	514.280029296875	2	514.28018	1026.54581	0.27963	0.00014381	-0.68942	-0.00035455	-0.40979	-0.00021075	514.279703428504	25.921	0.31229	25.631	25.36	25.672	-0.29022					9	5	2	0	0	0	0.47809	1	9211	9211		18.146	0.011366	1	2905300			15238	9592	9292	9343	14629	14629					0.03359670812119475
IQNMILKLK	9	Unmodified	_IQNMILKLK_					0	0	0		ENST00000577812.5_1_17:80442656-80446030:+|nuORF;nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF	ENST00000577812.5_1_17:80442656-80446030:+|nuORF	ENST00000577812.5_1_17:80442656-80446030:+|nuORF	MSMS	HCT116MG_D190212_S1	1	550.8478393554688	2	550.846645	1099.67874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.396	1	27.396	26.896	27.896	0								0	0	0	0.76834	1	9939	9939		6.7232	0.51738	1				15239	3728	9293	9344	14630	14630					0.13288398944428081
IQRETTIDP	9	Unmodified	_IQRETTIDP_					0	0	0		ENSG00000174007|ENST00000409690|CEP19	ENSG00000174007|ENST00000409690|CEP19	ENSG00000174007|ENST00000409690|CEP19	MSMS	HCT116MG_D190212_S2	2	536.80908203125	2	536.785296	1071.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.557	1	25.188	24.688	25.688	-0.36914								0	0	0	0.76718	1	9208	9208		10.824	0	1				15240	5315	9294	9345	14631	14631					0.02312233746692982
IQRLKVTRNGP	11	Unmodified	_IQRLKVTRNGP_					0	0	0		ENST00000219235.4_1_16:57398231-57398345:+|nuORF	ENST00000219235.4_1_16:57398231-57398345:+|nuORF	ENST00000219235.4_1_16:57398231-57398345:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	642.4188842773438	2	641.391128	1280.7677	0.55628	0.00035679	-0.55579	-0.00035648	0.00048658	3.1209E-07	641.3904652955679	55.224	0.56135	55.036	54.816	55.377	-0.18797					21	10	3	0	0	0	0.74191	1	21300	21300		2.9952	1.6657	1	29001000			15241	6747	9295	9346	14632	14632					0.13854950228301277
IQSISPKT	8	Unmodified	_IQSISPKT_					0	0	0			REV__ENSG00000113583|ENST00000231512|C5orf15	REV__ENSG00000113583|ENST00000231512|C5orf15	MSMS	HCT116MG_D190212_S4	4	437.2541809082031	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.781	1	43.406	42.906	43.906	-0.37433								0	0	0	0.8837	1	16105	16105		7.9102	0	1		+		15242	11488	9296	9347	14633	14633					0.055383825231729134
IQSNNRGP	8	Unmodified	_IQSNNRGP_					0	0	0			REV__ENST00000570320.5_1_16:24931453-24947070:-|nuORF	REV__ENST00000570320.5_1_16:24931453-24947070:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.22900390625	2	443.230491	884.446428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.385	1	23.385	22.885	23.885	0								0	0	0	0.87079	1	8326	8326		16.942	5.302	1		+		15243	12309	9297	9348	14634	14634					-0.00041727081952558365
IQSPPYQDP	9	Unmodified	_IQSPPYQDP_					0	0	0			REV__CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	REV__CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	522.75390625	2	522.753464	1043.49238	0.25804	0.00013489	1.2992	0.00067914	1.5572	0.00081403	522.7537591031305	21.682	0.20761	21.297	21.167	21.375	-0.38503					5	3	2	0	0	0	0.55223	1	7674	7674		13.906	0.39817	1	13343000	+		15244	10200	9298	9349	14635	14635					-0.027631266903881624
IQTLTHKNP	9	Unmodified	_IQTLTHKNP_					0	0	0			REV__ENST00000492618.5_1_7:56127237-56129562:+|nuORF	REV__ENST00000492618.5_1_7:56127237-56129562:+|nuORF	MSMS	HCT116MG_D190212_S4	4	351.20281982421875	3	351.201341	1050.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.653	1	30.289	29.789	30.789	-0.36416								0	0	0	0.76823	1	11094	11094		7.1017	0.37856	1		+		15245	12492	9299	9350	14636	14636					0.05892547708845086
IQYQKNLES	9	Unmodified	_IQYQKNLES_					0	0	0			REV__nc|ENSG00000173575|O14647-2|CHD2	REV__nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	HCT116MG_D190212_S3	3	561.79296875	2	561.793121	1121.57169	0.32351	0.00018174	0.41564	0.00023351	0.73915	0.00041525	561.7932240804613	41.953	0.30048	41.651	41.48	41.781	-0.30257					9	5	2	0	0	0	0.49914	1	15602	15602		16.942	3.8998	1	15041000	+		15246	13445	9300	9351	14637	14637					0.015765202637794573
IRCMRRLEEL	10	Unmodified	_IRCMRRLEEL_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MSMS	HCT116MG_D190212_S1	1	659.8553466796875	2	659.857749	1317.70094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.604	1	22.604	22.104	23.104	0								0	0	0	0.92917	1	8011	8011		9.3831	0.63772	1				15247	997	9301	9352	14638	14638					0.05480255350562402
IRDNFVIVY	9	Unmodified	_IRDNFVIVY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	HCT116MG_D190212_S1	1	569.8164672851562	2	569.816399	1137.61824	0.15573	8.8735E-05	0.26077	0.00014859	0.41649	0.00023732	569.8164668293157	50.91	0.25856	50.91	50.781	51.04	0					11	4	3	0	0	0	0.24534	1	19460	19460		36.506	13.358	1	34833000			15248	3032	9302	9353	14639	14639					0.05494004885713366
IRDNFVIVY	9	Unmodified	_IRDNFVIVY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	HCT116MG_D190212_S2	2	569.8163452148438	2	569.816399	1137.61824	0.37872	0.0002158	0.2495	0.00014217	0.62822	0.00035797	569.8165009828399	51.066	0.51647	50.888	50.706	51.223	-0.17868					26	9	4	0	0	0	0.030723	2	19573	19573;19644		85.642	28.17	1	252450000			15249	3032	9302	9353	14640;14641	14640					0.05494004885713366
IRDNFVIVY	9	Unmodified	_IRDNFVIVY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	HCT116MG_D190212_S2	2	1138.6265869140625	1	1138.62552	1137.61824	0.57934	0.00065965	0.24336	0.0002771	0.8227	0.00093675	1138.6257323743355	51.066	0.25961	50.888	50.758	51.018	-0.17868					6	4	2	0	0	0	0.026999	1	19613	19613		89.401	37.132	1	13980000			15250	3032	9302	9353	14642	14642					0.05494004885713366
IRDNFVIVY	9	Unmodified	_IRDNFVIVY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	HCT116MG_D190212_S3	3	569.8167724609375	2	569.816399	1137.61824	0.42902	0.00024446	0.082058	4.6758E-05	0.51108	0.00029122	569.8164093098206	51.327	0.36734	51.015	50.805	51.172	-0.31166					18	6	5	0	0	0	0.047849	1	19389	19389		75.761	29.74	1	14989000			15251	3032	9302	9353	14643	14643					0.05494004885713366
IRDNFVIVY	9	Unmodified	_IRDNFVIVY_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	HCT116MG_D190212_S4	4	569.8167114257812	2	569.816399	1137.61824	0.53754	0.0003063	0.16598	9.4579E-05	0.70352	0.00040088	569.8164704863842	51.37	0.31246	51.02	50.838	51.15	-0.35028					15	5	4	0	0	0	0.10244	1	19118	19118		57.722	23.62	1	13081000			15252	3032	9302	9353	14644	14644					0.05494004885713366
IRFKHLFWWWF	11	Unmodified	_IRFKHLFWWWF_					0	0	0			REV__nc|ENSG00000166262|Q96M60-2|FAM227B	REV__nc|ENSG00000166262|Q96M60-2|FAM227B	MSMS	HCT116MG_D190212_S3	3	555.96630859375	3	555.96623	1664.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.819	1	48.503	48.003	49.003	-0.31596								0	0	0	0.9619	1	18370	18370		0.094841	0.094841	1		+		15253	17196	9303	9354	14645	14645					0.07101580918424588
IRGPILSF	8	Unmodified	_IRGPILSF_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	HCT116MG_D190212_S2	2	451.7765808105469	2	451.776545	901.538538	0.24898	0.00011248	-0.010142	-4.582E-06	0.23884	0.0001079	451.7765284658403	52.527	0.41301	52.34	52.142	52.555	-0.18725					17	7	3	0	0	0	0.04808	1	20179	20179		125.62	15.995	1	28268000			15254	2292	9304	9355	14646	14646					0.08382983002388755
IRGPILSF	8	Unmodified	_IRGPILSF_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	HCT116MG_D190212_S3	3	451.7761535644531	2	451.776545	901.538538	0.25118	0.00011348	-0.52714	-0.00023815	-0.27596	-0.00012467	451.7762449348081	52.779	0.36586	52.472	52.3	52.666	-0.3064					10	6	2	0	0	0	0.12693	1	19988	19988		88.904	14.481	1	6359800			15255	2292	9304	9355	14647	14647					0.08382983002388755
IRKIILEYKAK	11	Unmodified	_IRKIILEYKAK_					0	0	0		tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	687.9464721679688	2	687.945205	1373.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.11	1	43.803	43.303	44.303	-0.30759								0	0	0	0.95113	1	16479	16479		5.7319	0	1				15256	18563	9305	9356	14648	14648					0.20387321758880717
IRKIILEYKAK	11	Unmodified	_IRKIILEYKAK_					0	0	0		tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	687.9463500976562	2	687.945205	1373.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.294	1	44.984	44.484	45.484	-0.30982								0	0	0	0.95636	1	16954	16954		2.9952	1.8019	1				15257	18563	9305	9356	14649	14649					0.20387321758880717
IRKIILEYKAK	11	Unmodified	_IRKIILEYKAK_					0	0	0		tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	687.9454345703125	2	687.945205	1373.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.878	1	45.567	45.067	46.067	-0.31094								0	0	0	0.95636	1	17190	17190		2.9952	1.6657	1				15258	18563	9305	9356	14650	14650					0.20387321758880717
IRKIILEYKAK	11	Unmodified	_IRKIILEYKAK_					0	0	0		tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	tr|U7T224|U7T224_FUSNUYcxB-likeproteindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00442PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	687.8358764648438	2	687.945205	1373.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.19	1	45.877	45.377	46.377	-0.31237								0	0	0	0.95636	1	17313	17313		2.9952	1.6657	1				15259	18563	9305	9356	14651	14651					0.20387321758880717
IRKPYIWEY	9	Unmodified	_IRKPYIWEY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S2	2	634.345703125	2	634.345323	1266.67609	0.68902	0.00043708	-0.067847	-4.3038E-05	0.62117	0.00039404	634.3452531650936	44.81	0.52261	44.725	44.428	44.951	-0.084797					18	9	3	0	0	0	0.034046	1	17032	17032		82.529	40.574	1	94359000			15260	3424	9306	9357	14652	14652					0.05342266811112495
IRKPYIWEY	9	Unmodified	_IRKPYIWEY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	HCT116MG_D190212_S2	2	423.2326354980469	3	423.232641	1266.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.922	1	44.835	44.335	45.335	-0.087341								0	0	0	0.46109	1	17071	17071		22.658	3.9369	1				15261	3424	9306	9357	14653	14653					0.05342266811112495
IRLEEQIKLDQ	11	Unmodified	_IRLEEQIKLDQ_					0	0	0			REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	462.2644348144531	3	462.264669	1383.77218	0.14501	6.7033E-05	-0.020782	-9.6066E-06	0.12423	5.7427E-05	462.2646437378897	21.672	0.36455	21.672	21.437	21.802	0					25	6	5	0	0	0	0.70332	1	7597	7597		12.929	0	1	231440000	+		15262	10150	9307	9358	14654	14654					0.0956436986054996
IRLLKKKTKKQ	11	Unmodified	_IRLLKKKTKKQ_					0	0	0		ENSG00000111536|ENST00000229134|IL26	ENSG00000111536|ENST00000229134|IL26	ENSG00000111536|ENST00000229134|IL26	MSMS	HCT116MG_D190212_S3	3	692.47900390625	2	692.479746	1382.94494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.578	1	58.309	57.809	58.809	-0.26932								0	0	0	0.96157	1	22287	22287		0.26902	0.26902	1				15263	2295	9308	9359	14655	14655					0.2687840577843872
IRLLKQKLKKK	11	Unmodified	_IRLLKQKLKKK_					0	0	0		ENST00000584588.5_1_17:38027782-38031519:+|nuORF	ENST00000584588.5_1_17:38027782-38031519:+|nuORF	ENST00000584588.5_1_17:38027782-38031519:+|nuORF	MSMS	HCT116MG_D190212_S1	1	698.5984497070312	2	698.497939	1394.98132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.056	1	28.056	27.556	28.556	0								0	0	0	0.96208	1	10206	10206		0	0	1				15264	8977	9309	9360	14656	14656					0.29963282675134906
IRLRKFIKRLP	11	Unmodified	_IRLRKFIKRLP_					0	0	0		tr|U7T2L2|U7T2L2_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00489PE=4SV=1	tr|U7T2L2|U7T2L2_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00489PE=4SV=1	tr|U7T2L2|U7T2L2_FUSNUTwo-componentsystem,OmpRfamily,responseregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00489PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	720.4910888671875	2	720.487905	1438.96126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.103	1	35.803	35.303	36.303	-0.30042								0	0	0	0.96141	1	13329	13329		0.35063	0.35063	1				15265	18580	9310	9361	14657	14657					0.2593353173519972
IRLSSSFSYA	10	Unmodified	_IRLSSSFSYA_					0	0	0			REV__ENSG00000175691|ENST00000314531|ZNF77	REV__ENSG00000175691|ENST00000314531|ZNF77	MULTI-SECPEP	HCT116MG_D190212_S3	3	565.25146484375	2	565.795663	1129.57677	0.40505	0.00022917	0.34132	0.00019312	0.74637	0.00042229	565.7956016985619	42.057	0.20789	41.755	41.625	41.833	-0.30257					6	3	2	0	0	0	0.30788	1	15681	15681		8.7454	0	1	4689400	+		15266	13526	9311	9362	14658	14658					0.017168241264016615
IRLVALTIHWY	11	Unmodified	_IRLVALTIHWY_					0	0	0			REV__ENSG00000182083|ENST00000319423|OR6B2	REV__ENSG00000182083|ENST00000319423|OR6B2	MULTI-SECPEP	HCT116MG_D190212_S1	1	692.4066162109375	2	692.908622	1383.80269	0.82838	0.00057399	-0.040812	-2.8279E-05	0.78757	0.00054571	692.908629150065	52.786	0.51398	52.786	52.434	52.948	0					13	9	2	0	0	0	0.36607	1	20173	20173		1.4819	1.1749	1	11092000	+		15267	13701	9312	9363	14659	14659					0.12614193036256438
IRNEEIKNY	9	Unmodified	_IRNEEIKNY_					0	0	0			REV__nc|ENSG00000106823|O94769-2|ECM2	REV__nc|ENSG00000106823|O94769-2|ECM2	MULTI-MSMS	HCT116MG_D190212_S2	2	589.8125	2	589.811845	1177.60914	0.30186	0.00017804	0.48072	0.00028353	0.78258	0.00046157	589.8120332665677	30.44	0.35864	30.156	30.028	30.387	-0.28453					8	6	2	0	0	0	0.22946	1	11215	11215		38.176	3.2435	1	59928000	+		15268	11312	9313	9364	14660	14660					0.027436115293767216
IRNHSLRLV	9	Unmodified	_IRNHSLRLV_					0	0	0			REV__TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant	REV__TLR6|p.N423Tfs*8|1|0.09|ENSG00000174130|chr4:38828206-38828206|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	369.89501953125	3	369.896363	1106.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.153	1	39.075	38.575	39.575	-0.077835								0	0	0	0.76699	1	14727	14727		11.495	0.6952	1		+		15269	13468	9314	9365	14661	14661					0.11819337965312116
IRNQIIREL	9	Unmodified	_IRNQIIREL_					0	0	0		ENST00000425818.2_1_15:66679685-66737158:+|nuORF;ENST00000599345.1_1_19:4101110-4123872:-|nuORF;MAP2K1|p.A284Gfs*2|1|0.06|ENSG00000169032|chr15:66485144-66485145|-/T|frameshift_variant;MAP2K2|p.R303Afs*24|2|0.26|ENSG00000126934|chr19:4099217-4099217|G/-|frameshift_variant;nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;ENSG00000126934|ENST00000262948|MAP2K2	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	577.854248046875	2	577.853847	1153.69314	0.90789	0.00052463	-0.7954	-0.00045962	0.11249	6.5003E-05	577.8537513115361	37.488	0.2028	37.488	37.348	37.55	0					5	3	2	0	0	0	0.51301	1	14029	14029		16.149	6.766	1	5653600			15270	2953	9315	9366	14662	14662					0.12244187416945351
IRNRRKYAM	9	Unmodified	_IRNRRKYAM_					0	0	0		PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant;PIEZO2|p.Y2489Sfs*7|1|0.06|ENSG00000154864|chr18:10680346-10680347|-/GG|frameshift_variant;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;PIEZO2|p.L2716Ffs*33|1|0.12|ENSG00000154864|chr18:10671638-10671639|-/A|frameshift_variant;ENSG00000154864|ENST00000674853|PIEZO2	PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant	PIEZO2|p.E2492Kfs*3|1|0.27|ENSG00000154864|chr18:10680339-10680339|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	403.23223876953125	3	403.23287	1206.67678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.579	1	13.579	13.079	14.079	0								0	0	0	0.76991	1	4416	4416		1.1933	0.49568	1				15271	4234	9316	9367	14663	14663					0.08170782979186697
IRNVTKEYK	9	Unmodified	_IRNVTKEYK_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ABCA8|p.L1128*|1|0.37|ENSG00000141338|chr17:68885242-68885242|A/-|frameshift_variant;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MSMS	HCT116MG_D190212_S2	2	384.22296142578125	3	384.224146	1149.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.597	1	29.296	28.796	29.796	-0.30095								0	0	0	0.76823	1	10848	10848		7.1017	2.2047	1				15272	6	9317	9368	14664	14664					0.08176792288713841
IRPNSKALV	9	Unmodified	_IRPNSKALV_					0	0	0		ENSG00000184999|ENST00000332793|SLC22A10;nc|ENSG00000184999|Q63ZE4-2|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MSMS	HCT116MG_D190212_S2	2	499.31329345703125	2	499.311284	996.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.792	1	55.606	55.106	56.106	-0.18565								0	0	0	0.71946	1	21514	21514		18.146	2.2992	1				15273	5796	9318	9369	14665	14665					0.10957441951131841
IRRLLILILKI	11	Unmodified	_IRRLLILILKI_					0	0	0		nc|ENSG00000184613|Q99435-2|NELL2	nc|ENSG00000184613|Q99435-2|NELL2	nc|ENSG00000184613|Q99435-2|NELL2	MSMS	HCT116MG_D190212_S1	1	455.2490539550781	3	455.33403	1362.98026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.688	1	49.688	49.188	50.188	0								0	0	0	0.96208	1	18939	18939		0	0	1				15274	9579	9319	9370	14666	14666					0.3132906830628599
IRSSYIRVL	9	Unmodified	_IRSSYIRVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	HCT116MG_D190212_S2	2	553.8379516601562	2	553.837665	1105.66078	0.45826	0.0002538	0.47095	0.00026083	0.92921	0.00051463	553.8378160585511	39.078	0.2577	38.994	38.807	39.064	-0.083702					9	4	3	0	0	0	0.06555	1	14696	14696		67.081	27.131	1	38402000			15275	1686;8354	9320	9371	14667	14667					0.11217400013947554
IRVRLFHLQLV	11	Unmodified	_IRVRLFHLQLV_					0	0	0			REV__LCMT2|p.F452Lfs*11|2|0.18|ENSG00000168806|chr15:43329134-43329134|A/-|frameshift_variant	REV__LCMT2|p.F452Lfs*11|2|0.18|ENSG00000168806|chr15:43329134-43329134|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	697.766845703125	2	697.443163	1392.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.538	1	61.281	60.781	61.781	-0.2571								0	0	0	0.9598	1	23218	23218		1.1933	0.12188	1		+		15276	16973	9321	9372	14668	14668					0.1910527705581444
ISAATFLA	8	Unmodified	_ISAATFLA_					0	0	0			REV__ENSG00000163376|ENST00000417314|KBTBD8	REV__ENSG00000163376|ENST00000417314|KBTBD8	MSMS	HCT116MG_D190212_S2	2	397.2265625	2	397.226354	792.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.907	1	42.837	42.337	43.337	-0.069984								0	0	0	0.15074	1	16253	16253		74.396	21.703	1		+		15277	12916	9322	9373	14669	14669					0.033633259487032774
ISADHGVHEL	10	Unmodified	_ISADHGVHEL_					0	0	0		nc|ENSG00000174473|Q49A17-2|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	MSMS	HCT116MG_D190212_S1	1	539.2606201171875	2	539.269813	1076.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.079	1	27.079	26.579	27.579	0								0	0	0	0.76907	1	9811	9811		32.786	2.0822	1				15278	9556	9323	9374	14670	14670					-0.010129195675290248
ISAFYAFILME	11	Unmodified	_ISAFYAFILME_					0	0	0			REV__USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	REV__USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	652.8340454101562	2	652.8334	1303.65225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.746	1	31.371	30.871	31.871	-0.37529								0	0	0	0.94012	1	11534	11534		11.495	0	1		+		15279	10594	9324	9375	14671	14671					0.01256665262462775
ISAGYPTR	8	Unmodified	_ISAGYPTR_					0	0	0			REV__ENSG00000196781|ENST00000376499|TLE1	REV__ENSG00000196781|ENST00000376499|TLE1	MULTI-MSMS	HCT116MG_D190212_S4	4	432.73211669921875	2	432.732335	863.450116	0.17804	7.7044E-05	0.348	0.00015059	0.52604	0.00022764	432.7323028062702	30.292	0.27589	29.935	29.753	30.029	-0.3571					6	5	2	0	0	0	0.41924	1	10984	10984		48.346	0	1	9682800	+		15280	14045	9325	9376	14672	14672					0.012929426918958598
ISARAWPG	8	Unmodified	_ISARAWPG_					0	0	0			REV__NACAD|p.V1328Cfs*176|1|0.17|ENSG00000136274|chr7:45082199-45082199|T/-|frameshift_variant	REV__NACAD|p.V1328Cfs*176|1|0.17|ENSG00000136274|chr7:45082199-45082199|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	429.08868408203125	2	429.235045	856.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.298	1	23.05	22.55	23.55	-0.24775								0	0	0	0.87079	1	8149	8149		16.942	1.1741	1		+		15281	17060	9326	9377	14673	14673					0.02156666274379404
ISASQYGPSPG	11	Unmodified	_ISASQYGPSPG_					0	0	0		ENST00000307808.10_1_4:87928343-87928421:+|nuORF	ENST00000307808.10_1_4:87928343-87928421:+|nuORF	ENST00000307808.10_1_4:87928343-87928421:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	532.2559814453125	2	532.256371	1062.49819	0.4773	0.00025404	-0.19827	-0.00010553	0.27902	0.00014851	532.2563945201639	23.934	0.77989	23.676	23.157	23.937	-0.25816					22	14	2	0	0	0	0.70377	1	8498	8498		20.415	4.2654	1	2463700			15282	7033	9327	9378	14674	14674					-0.030560281787074928
ISCLREFIFVP	11	Unmodified	_ISCLREFIFVP_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	HCT116MG_D190212_S1	1	662.3577880859375	2	662.360116	1322.70568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.862	1	40.862	40.362	41.362	0								0	0	0	0.95023	1	15371	15371		6.2058	1.3088	1		+		15283	11857	9328	9379	14675	14675					0.057234627649449976
ISCWKIDP	8	Unmodified	_ISCWKIDP_					0	0	0			REV__ENST00000366591.4_1_1:236305922-236343463:+|nuORF	REV__ENST00000366591.4_1_1:236305922-236343463:+|nuORF	MSMS	HCT116MG_D190212_S1	1	481.2226257324219	2	481.244221	960.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.457	1	18.457	17.957	18.957	0								0	0	0	0.81076	1	6345	6345		21.747	1.293	1		+		15284	15107	9329	9380	14676	14676					-0.007929598659416115
ISDAIREKMKK	11	Unmodified	_ISDAIREKMKK_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	659.8816528320312	2	659.879204	1317.74386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.549	1	43.243	42.743	43.743	-0.30616								0	0	0	0.93717	1	16253	16253		13.042	3.6593	1				15285	741	9330	9381	14677	14677					0.0976934867962882
ISDEANSNF	9	Unmodified	_ISDEANSNF_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MULTI-MSMS	HCT116MG_D190212_S3	3	996.427490234375	1	996.426881	995.419604	0.45414	0.00045251	0.11289	0.00011249	0.56703	0.000565	996.427493270717	31.204	0.26124	30.944	30.813	31.074	-0.26071					7	4	2	0	0	0	0.016744	1	11422	11422		99.755	44.982	1	5136300			15286	3559	9331	9382	14678	14678					-0.07828880483805278
ISDEIDWCQTI	11	Unmodified	_ISDEIDWCQTI_					0	0	0			REV__ENSG00000153993|ENST00000284136|SEMA3D	REV__ENSG00000153993|ENST00000284136|SEMA3D	MULTI-SECPEP	HCT116MG_D190212_S2	2	661.3770141601562	2	661.800285	1321.58602	0.44756	0.0002962	-1.6469	-0.0010899	-1.1993	-0.00079371	661.7996967876666	51.273	0.25731	51.094	50.914	51.171	-0.17868					6	4	2	0	0	0	0.3453	1	19610	19610		18.146	1.0335	1	8809700	+		15287	12666	9332	9383	14679	14679					-0.06191195370274727
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	MULTI-MSMS	HCT116MG_D190212_S1	1	496.7380065917969	2	496.737814	991.461075	0.39677	0.00019709	0.056393	2.8013E-05	0.45316	0.0002251	496.73778529585775	26.527	0.41645	26.527	26.293	26.709	0					15	7	3	0	0	0	0.023611	1	9584	9584		92.822	44.476	1	52837000			15288	820	9333	9384	14680	14680					-0.03499699724466154
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	MULTI-MSMS	HCT116MG_D190212_S2	2	496.7381286621094	2	496.737814	991.461075	0.31409	0.00015602	0.15761	7.8291E-05	0.4717	0.00023431	496.7378702028778	26.881	0.52612	26.529	26.345	26.871	-0.35254					21	9	3	0	0	0	0.050578	1	9744	9744		74.423	32.328	1	160270000			15289	820	9333	9384	14681	14681					-0.03499699724466154
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	MULTI-MSMS	HCT116MG_D190212_S2	2	992.4686889648438	1	992.468352	991.461075	0.68383	0.00067868	-0.043927	-4.3596E-05	0.6399	0.00063508	992.4682154362752	26.881	0.36945	26.529	26.396	26.766	-0.35254					8	6	2	0	0	0	0.0054498	1	9767	9767		133.7	66.358	1	27824000			15290	820	9333	9384	14682	14682					-0.03499699724466154
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	MULTI-MSMS	HCT116MG_D190212_S3	3	496.7379150390625	2	496.737814	991.461075	0.40828	0.00020281	-0.23808	-0.00011826	0.1702	8.4546E-05	496.73771232044913	26.747	0.26014	26.598	26.463	26.723	-0.14924					10	4	3	0	0	0	0.027492	1	9613	9613		88.904	40.558	1	11457000			15291	820	9333	9384	14683	14683					-0.03499699724466154
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	992.468352	991.461075	0.66479	0.00065978	0.082186	8.1567E-05	0.74697	0.00074135	992.4676904154575	26.527	0.208	26.527	26.397	26.605	0	-0.0009713	0.00010844	NaN	133.7	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4597000			15292	820	9333	9384							-0.03499699724466154
ISDIGGHAY	9	Unmodified	_ISDIGGHAY_					0	0	0		nc|ENSG00000111203|Q969R8-2|ITFG2	nc|ENSG00000111203|Q969R8-2|ITFG2	nc|ENSG00000111203|Q969R8-2|ITFG2	MULTI-MSMS	HCT116MG_D190212_S1	1	466.7274475097656	2	466.727249	931.439946	0.46641	0.00021769	-0.15782	-7.3658E-05	0.3086	0.00014403	466.7270784036122	28.821	0.26105	28.821	28.694	28.955	0					9	4	3	0	0	0	0.030247	1	10518	10518		86.121	35.266	1	13551000			15293	9424	9334	9385	14684	14684					-0.028516650333358484
ISDIGGHAY	9	Unmodified	_ISDIGGHAY_					0	0	0		nc|ENSG00000111203|Q969R8-2|ITFG2	nc|ENSG00000111203|Q969R8-2|ITFG2	nc|ENSG00000111203|Q969R8-2|ITFG2	MULTI-MSMS	HCT116MG_D190212_S2	2	466.7270202636719	2	466.727249	931.439946	0.24542	0.00011454	-0.3306	-0.0001543	-0.085176	-3.9754E-05	466.7269719810668	29.173	0.20351	28.856	28.761	28.964	-0.31613					6	3	2	0	0	0	0.035402	1	10692	10692		81.864	31.009	1	31388000			15294	9424	9334	9385	14685	14685					-0.028516650333358484
ISDIQRGQAG	10	Unmodified	_ISDIQRGQAG_					0	0	0		ENSG00000142549|ENST00000270642|IGLON5	ENSG00000142549|ENST00000270642|IGLON5	ENSG00000142549|ENST00000270642|IGLON5	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.2737426757812	2	522.775262	1043.53597	0.36174	0.00018911	0.28879	0.00015097	0.65053	0.00034008	522.7753419490858	50.859	0.30945	50.68	50.5	50.81	-0.17868					7	5	2	0	0	0	0.28114	1	19518	19518		14.838	0	1	28011000			15295	3764	9335	9386	14686	14686					0.015944828067631533
ISDLAQHY	8	Unmodified	_ISDLAQHY_					0	0	0		CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;nc|ENSG00000163468|P49368-2|CCT3	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	473.734619140625	2	473.735074	945.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.462	1	30.177	29.677	30.677	-0.28453								0	0	0	0.090641	1	11200	11200		85.357	23.999	1				15296	365	9336	9387	14687	14687					-0.019313785162808017
ISDLGQHTL	9	Unmodified	_ISDLGQHTL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S2	2	492.26220703125	2	492.261456	982.50836	0.32046	0.00015775	0.21448	0.00010558	0.53494	0.00026333	492.2616401884266	33.893	0.25991	33.712	33.546	33.806	-0.18085					9	4	3	0	0	0	0.045679	1	12614	12614		76.825	22.992	1	16675000			15297	6563	9337	9388	14688	14688					0.01640579546540266
ISDLGQHTL	9	Unmodified	_ISDLGQHTL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S3	3	492.26202392578125	2	492.261456	982.50836	0.20933	0.00010304	-0.040391	-1.9883E-05	0.16894	8.316E-05	492.2614492959335	34.087	0.31252	33.793	33.559	33.871	-0.29419					9	5	3	0	0	0	0.012596	1	12539	12539		106.94	41.705	1	6476300			15298	6563	9337	9388	14689	14689					0.01640579546540266
ISDLIRDSY	9	Unmodified	_ISDLIRDSY_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-MSMS	HCT116MG_D190212_S1	1	541.2803955078125	2	541.279846	1080.54514	0.29331	0.00015877	0.47223	0.00025561	0.76555	0.00041438	541.2800005408956	39.317	0.23444	39.317	39.163	39.398	0					13	5	3	0	0	0	0.0034381	2	14726	14724;14726		160.69	26.394	1	55801000			15299	6346	9338	9389	14690;14691	14691					0.008088313724329055
ISDLIRDSY	9	Unmodified	_ISDLIRDSY_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-MSMS	HCT116MG_D190212_S3	3	541.2799682617188	2	541.279846	1080.54514	0.42484	0.00022996	0.66432	0.00035958	1.0892	0.00058954	541.2801003735444	39.52	0.20295	39.219	39.087	39.29	-0.30137					5	3	2	0	0	0	0.0051419	1	14679	14679		136.39	14.213	1	22463000			15300	6346	9338	9389	14692	14692					0.008088313724329055
ISDLIRDSY	9	Unmodified	_ISDLIRDSY_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	541.279846	1080.54514	0.68903	0.00037296	0.77284	0.00041832	1.4619	0.00079128	541.2802386959621	39.315	0.25813	39.237	39.07	39.328	-0.077835	-0.020281	0.00013231	NaN	160.69	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78880000			15301	6346	9338	9389							0.008088313724329055
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	935.4479370117188	1	935.446888	934.439611	0.55587	0.00051998	0.33244	0.00031098	0.8883	0.00083096	935.4471642559175	32.406	0.46828	32.176	31.995	32.463	-0.23009					20	8	4	0	0	0	0.0034365	1	11990	11990		160.52	78.903	1	282770000			15302	7500	9339	9390	14693	14693					-0.030230847531811378
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	468.22711181640625	2	468.227082	934.439611	0.077309	3.6198E-05	0.31068	0.00014547	0.38799	0.00018167	468.2270585070046	32.406	0.31235	32.176	32.046	32.359	-0.23009					11	5	3	0	0	0	0.007119	1	12014	12014		120.45	62.979	1	27598000			15303	7500	9339	9390	14694	14694					-0.030230847531811378
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	935.4472045898438	1	935.446888	934.439611	0.80934	0.00075709	0.050523	4.7262E-05	0.85986	0.00080435	935.4467267064149	32.559	0.46889	32.281	32.098	32.567	-0.27841					23	8	4	0	0	0	0.0035147	1	11925	11925		168.66	87.046	1	70704000			15304	7500	9339	9390	14695	14695					-0.030230847531811378
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	468.2271728515625	2	468.227082	934.439611	0.32709	0.00015315	0.16984	7.9522E-05	0.49693	0.00023268	468.2270982821264	32.521	0.41673	32.242	32.098	32.515	-0.27841					12	7	3	0	0	0	0.0066233	1	11939	11939		123.45	64.772	1	8680800			15305	7500	9339	9390	14696	14696					-0.030230847531811378
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	935.446533203125	1	935.446888	934.439611	0.67541	0.00063181	0.21587	0.00020194	0.89128	0.00083374	935.4469330618442	32.615	0.46725	32.235	32.053	32.52	-0.37924					19	8	4	0	0	0	0.0048275	1	11868	11868		139.14	71.795	1	22838000			15306	7500	9339	9390	14697	14697					-0.030230847531811378
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	468.2269287109375	2	468.227082	934.439611	0.023899	1.119E-05	0.22236	0.00010411	0.24626	0.0001153	468.226893504667	32.614	0.25964	32.234	32.105	32.364	-0.37924					7	4	2	0	0	0	0.14171	1	11901	11901		49.933	11.959	1	5864100			15307	7500	9339	9390	14698	14698					-0.030230847531811378
ISDTGSAGL	9	Unmodified	_ISDTGSAGL_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF;PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	820.4054565429688	1	820.404689	819.397412	0.72422	0.00059415	0.087034	7.1403E-05	0.81125	0.00066555	820.4047061369431	30.759	0.31028	30.492	30.301	30.612	-0.26704					7	5	2	0	0	0	0.010304	1	11345	11345		112.59	23.166	1	18610000			15308	8140	9340	9391	14699	14699					-0.01951060161559326
ISDTGSAGL	9	Unmodified	_ISDTGSAGL_					0	0	0		ENST00000469684.1_1_15:44038662-44048907:+|nuORF;PDIA3|p.W56Lfs*11|1|0.47|ENSG00000167004|chr15:43746699-43746700|-/C|frameshift_variant;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	820.4051513671875	1	820.404689	819.397412	0.86206	0.00070724	-0.073001	-5.989E-05	0.78906	0.00064735	820.4046570964593	30.839	0.26026	30.578	30.448	30.709	-0.26071					6	4	2	0	0	0	0.0034599	1	11273	11273		162.95	53.322	1	7816600			15309	8140	9340	9391	14700	14700					-0.01951060161559326
ISEDKNPDY	9	Unmodified	_ISEDKNPDY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S1	1	540.7462158203125	2	540.745836	1079.47712	0.51216	0.00027695	-0.041543	-2.2464E-05	0.47062	0.00025448	540.745770317952	21.828	0.26062	21.828	21.698	21.959	0					14	4	4	0	0	0	0.0039465	2	7703	7663;7703		151.48	88.907	1	51264000			15310	5303	9341	9392	14701;14702	14702					-0.05944038278221342
ISEDKNPDY	9	Unmodified	_ISEDKNPDY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	1080.4854736328125	1	1080.4844	1079.47712	0.57307	0.00061919	-0.37396	-0.00040406	0.1991	0.00021513	1080.4838045722677	22.255	0.25953	21.869	21.739	21.999	-0.3852					7	4	2	0	0	0	3.7762E-08	1	7885	7885		226.55	137.6	1	16367000			15311	5303	9341	9392	14703	14703					-0.05944038278221342
ISEDKNPDY	9	Unmodified	_ISEDKNPDY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-SECPEP	HCT116MG_D190212_S2	2	541.2800903320312	2	540.745836	1079.47712	0.61168	0.00033076	0.018804	1.0168E-05	0.63048	0.00034093	540.7458014016113	22.255	0.41554	21.869	21.687	22.103	-0.3852					21	7	5	0	0	0	0.080067	1	7846	7846		67.081	21.381	1	257650000			15312	5303	9341	9392	14704	14704					-0.05944038278221342
ISEDKNPDY	9	Unmodified	_ISEDKNPDY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S3	3	540.7459716796875	2	540.745836	1079.47712	0.46758	0.00025284	-0.10133	-5.4796E-05	0.36625	0.00019805	540.7457378889508	21.761	0.47021	21.777	21.639	22.109	0.016226					22	8	4	0	0	0	0.048237	1	7601	7601		75.571	21.738	1	63849000			15313	5303	9341	9392	14705	14705					-0.05944038278221342
ISEDKNPDY	9	Unmodified	_ISEDKNPDY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MSMS	HCT116MG_D190212_S4	4	540.7459716796875	2	540.745836	1079.47712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.058	1	21.83	21.33	22.33	-0.22777								0	0	0	0.018466	1	7651	7651		93.938	31.365	1				15314	5303	9341	9392	14706	14706					-0.05944038278221342
ISEDKNPDY	9	Unmodified	_ISEDKNPDY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1080.4844	1079.47712	0.41672	0.00045026	-0.62019	-0.0006701	-0.20346	-0.00021984	1080.4829154805927	21.79	0.15686	21.796	21.682	21.839	0.006525	-0.036549	-0.00021436	NaN	226.55	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1540500			15315	5303	9341	9392							-0.05944038278221342
ISEKKMALP	9	Unmodified	_ISEKKMALP_					0	0	0			REV__ENSG00000130700|ENST00000252997|GATA5	REV__ENSG00000130700|ENST00000252997|GATA5	MSMS	HCT116MG_D190212_S2	2	508.7725524902344	2	508.794078	1015.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.611	1	39.533	39.033	40.033	-0.077835								0	0	0	0.49326	1	14914	14914		29.082	0	1		+		15316	11935	9342	9393	14707	14707					0.06643857748008486
ISEKNEEEV	9	Unmodified	_ISEKNEEEV_					0	0	0		nc|ENSG00000163697|Q92870-3|APBB2;nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2	nc|ENSG00000163697|Q92870-3|APBB2	nc|ENSG00000163697|Q92870-3|APBB2	MSMS	HCT116MG_D190212_S2	2	538.758056640625	2	538.758943	1075.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.095	1	44.016	43.516	44.516	-0.078373								0	0	0	0.56943	1	16738	16738		25.399	3.6527	1				15317	4623	9343	9394	14708	14708					-0.03139769106769563
ISEPIESIE	9	Unmodified	_ISEPIESIE_					0	0	0			REV__LRRC1|p.P95S|1|0.34|ENSG00000137269|chr6:53878998-53878998|C/T|missense_variant	REV__LRRC1|p.P95S|1|0.34|ENSG00000137269|chr6:53878998-53878998|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	1016.5123901367188	1	1016.51463	1015.50736	0.81389	0.00082733	-2.0498	-0.0020837	-1.2359	-0.0012563	1016.5118661679496	57.256	0.20771	57.077	56.999	57.207	-0.17904					7	3	3	0	0	0	0.23301	1	22137	22137		21.747	3.6003	1	14307000	+		15318	16987	9344	9395	14709	14709					0.00022320386960927863
ISEQQAEKI	9	Unmodified	_ISEQQAEKI_					0	0	0		nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	MSMS	HCT116MG_D190212_S1	1	523.2799682617188	2	523.279846	1044.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.737	1	28.737	28.237	29.237	0								0	0	0	0.49326	1	10477	10477		29.082	3.6823	1				15319	4017	9345	9396	14710	14710					0.02464831372435583
ISEQTGKELLY	11	Unmodified	_ISEQTGKELLY_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	HCT116MG_D190212_S1	1	640.8402709960938	2	640.840268	1279.66598	0.48001	0.00030761	-0.14271	-9.1457E-05	0.33729	0.00021615	640.8400915176809	39.347	0.30001	39.347	39.201	39.501	0					20	6	4	0	0	0	2.9679E-05	2	14728	14728;14807		164.85	57.911	1	174800000			15320	3145	9346	9397	14711;14712	14711					0.0373361429524266
ISEQTGKELLY	11	Unmodified	_ISEQTGKELLY_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	HCT116MG_D190212_S2	2	640.8402709960938	2	640.840268	1279.66598	0.71651	0.00045917	0.12515	8.02E-05	0.84166	0.00053937	640.8402874138063	39.33	0.56047	39.252	39.019	39.579	-0.077835					24	10	3	0	0	0	4.8021E-06	1	14782	14782		176.41	69.466	1	741170000			15321	3145	9346	9397	14713	14713					0.0373361429524266
ISEQTGKELLY	11	Unmodified	_ISEQTGKELLY_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	HCT116MG_D190212_S2	2	1280.672607421875	1	1280.67326	1279.66598	0.77187	0.00098852	-0.18599	-0.00023819	0.58589	0.00075033	1280.672732421759	39.33	0.20658	39.252	39.122	39.328	-0.077835					5	3	2	0	0	0	0.0014186	1	14823	14823		153.7	77.938	1	33831000			15322	3145	9346	9397	14714	14714					0.0373361429524266
ISEQTGKELLY	11	Unmodified	_ISEQTGKELLY_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	HCT116MG_D190212_S3	3	640.840576171875	2	640.840268	1279.66598	0.48805	0.00031276	-0.059986	-3.8441E-05	0.42807	0.00027432	640.8401618815582	39.586	0.29282	39.285	39.087	39.38	-0.30137					16	9	3	0	0	0	2.2276E-05	2	14696	14685;14696		168.29	61.349	1	73838000			15323	3145	9346	9397	14715;14716	14716					0.0373361429524266
ISEQTGKELLY	11	Unmodified	_ISEQTGKELLY_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MSMS	HCT116MG_D190212_S4	4	640.8403930664062	2	640.840268	1279.66598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.723	1	39.344	38.844	39.844	-0.37936								0	0	0	0.037053	1	14579	14579		88.576	22.119	1				15324	3145	9346	9397	14717	14717					0.0373361429524266
ISERPKESMY	10	Unmodified	_ISERPKESMY_					0	0	0		nc|ENSG00000155090|Q13118-3|KLF10;nc|ENSG00000155090|Q13118-4|KLF10;nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	nc|ENSG00000155090|Q13118-3|KLF10	MULTI-MSMS	HCT116MG_D190212_S2	2	620.3056640625	2	620.305538	1238.59652	0.5142	0.00031896	-0.87637	-0.00054361	-0.36216	-0.00022465	620.3050286766811	24.646	0.31319	24.266	24.082	24.396	-0.38003					12	5	3	0	0	0	0.05194	1	8842	8842		85.764	47.589	1	22630000			15325	4238	9347	9398	14718	14718					-0.013231679251703099
ISFCYDGP	8	Unmodified	_ISFCYDGP_					0	0	0			REV__nc|ENSG00000166448|Q8N3G9-3|TMEM130	REV__nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	HCT116MG_D190212_S4	4	451.1936950683594	2	451.191654	900.368755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.771	1	25.481	24.981	25.981	-0.29022								0	0	0	0.8396	1	9149	9149		19.439	4.8573	1		+		15326	13107	9348	9399	14719	14719					-0.08541501062359202
ISFQALCMLLY	11	Carbamidomethyl (C)	_ISFQALC(Carbamidomethyl (C))MLLY_	ISFQALC(1)MLLY		ISFQALC(48)MLLY		0	1	0		GPR158|p.D431Y|1|0.14|ENSG00000151025|chr10:25412429-25412429|G/T|missense_variant	GPR158|p.D431Y|1|0.14|ENSG00000151025|chr10:25412429-25412429|G/T|missense_variant	GPR158|p.D431Y|1|0.14|ENSG00000151025|chr10:25412429-25412429|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	679.8450317382812	2	679.845984	1357.67742	-0.14797	-0.0001006	-0.74067	-0.00050354	-0.88865	-0.00060414	679.8452545952204	38.257	0.31266	38.257	38.071	38.384	0					15	5	4	0	0	0	0.48186	1	14317	14317		47.749	11.622	1	66147000			15327	9192	9349	9400	14720	14720	46				0.012883967933703389
ISGGGYQEQ	9	Unmodified	_ISGGGYQEQ_					0	0	0			REV__PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	REV__PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	469.2644958496094	2	469.714339	937.414125	0.34666	0.00016283	-0.33635	-0.00015799	0.01031	4.8427E-06	469.714190461902	20.29	0.52166	20.29	20.07	20.592	0					15	9	2	0	0	0	0.30874	1	7088	7088		29.841	0.759	1	2555500	+		15328	11524	9350	9401	14721	14721					-0.05708559275615244
ISGGGYQEQ	9	Unmodified	_ISGGGYQEQ_					0	0	0			REV__PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	REV__PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	938.4210205078125	1	938.421401	937.414125	0.51371	0.00048208	0.37764	0.00035439	0.89135	0.00083646	938.4216222136214	20.357	0.78112	20.405	19.895	20.676	0.048107					25	14	2	0	0	0	0.24534	1	6940	6940		36.506	2.1045	1	2954900	+		15329	11524	9350	9401	14722	14722					-0.05708559275615244
ISGIITVAFVL	11	Unmodified	_ISGIITVAFVL_					0	0	0			REV__tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	REV__tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	377.8608093261719	3	378.237392	1131.69035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.564	1	33.18	32.68	33.68	-0.38426								0	0	0	0.95307	1	12223	12223		4.7159	1.3963	1		+		15330	17706	9351	9402	14723	14723					0.1297691923941784
ISGIRPTYILR	11	Unmodified	_ISGIRPTYILR_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L;ENST00000484069.1_1_X:64743438-64749476:-|nuORF	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MSMS	HCT116MG_D190212_S3	3	430.26446533203125	3	430.262712	1287.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.058	1	49.743	49.243	50.243	-0.31525								0	0	0	0.95636	1	18866	18866		1.2148	0.14337	1				15331	786	9352	9403	14724	14724					0.13393316139536182
ISGIRPTYILR	11	Unmodified	_ISGIRPTYILR_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L;ENST00000484069.1_1_X:64743438-64749476:-|nuORF	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MSMS	HCT116MG_D190212_S3	3	430.2646484375	3	430.262712	1287.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.641	1	50.327	49.827	50.827	-0.31381								0	0	0	0.95636	1	19101	19101		1.2148	0.14337	1				15332	786	9352	9403	14725	14725					0.13393316139536182
ISGSLFDKRRL	11	Unmodified	_ISGSLFDKRRL_					0	0	0		nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	nc|ENSG00000142731|O00444-3|PLK4	nc|ENSG00000142731|O00444-3|PLK4	MSMS	HCT116MG_D190212_S2	2	646.3768920898438	2	646.377686	1290.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.628	1	32.416	31.916	32.916	-0.21135								0	0	0	0.82946	1	12078	12078		29.082	5.2918	1				15333	3772	9353	9404	14726	14726					0.10707841617136182
ISGSLSLLGL	10	Unmodified	_ISGSLSLLGL_					0	0	0			REV__ENST00000375050.5_1_6:32157573-32157942:-|nuORF	REV__ENST00000375050.5_1_6:32157573-32157942:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	480.29241943359375	2	480.292225	958.569897	0.18045	8.6668E-05	-0.146	-7.0122E-05	0.034448	1.6545E-05	480.29215021845323	50.986	0.20895	50.672	50.542	50.751	-0.31381					6	3	2	0	0	0	0.037761	1	19265	19265		96.285	6.1498	1	11287000	+		15334	15209	9354	9405	14727	14727					0.08895511245816579
ISGTYTYIK	9	Unmodified	_ISGTYTYIK_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B	REV__nc|ENSG00000169994|Q6PIF6-2|MYO7B	MSMS	HCT116MG_D190212_S2	2	523.2800903320312	2	523.281857	1044.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.813	1	31.564	31.064	32.064	-0.24883								0	0	0	0.76655	1	11749	11749		13.042	1.4022	1		+		15335	13274	9355	9406	14728	14728					0.02866920866131295
ISGVFISY	8	Unmodified	_ISGVFISY_					0	0	0		ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	MSMS	HCT116MG_D190212_S2	2	443.2391357421875	2	443.239461	884.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.91	1	46.789	46.289	47.289	-0.12034								0	0	0	0.17647	1	17881	17881		70.716	7.1527	1				15336	5951	9356	9407	14729	14729					0.017515951201858115
ISHEEELIP	9	Unmodified	_ISHEEELIP_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant;ENST00000514344.5_1_5:98208119-98208242:-|nuORF	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	HCT116MG_D190212_S3	3	533.774658203125	2	533.774396	1065.53424	0.54286	0.00028976	0.0066941	3.5732E-06	0.54955	0.00029334	533.774433679164	42.692	0.52142	42.388	42.04	42.561	-0.30352					15	9	2	0	0	0	0.21251	1	15937	15937		39.957	1.7818	1	3512400			15337	4198	9357	9408	14730	14730					0.004094289981367183
ISHEEELIP	9	Unmodified	_ISHEEELIP_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant;ENST00000514344.5_1_5:98208119-98208242:-|nuORF	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	533.774396	1065.53424	0.71102	0.00037952	-0.14902	-7.9542E-05	0.562	0.00029998	534.2757778417268	42.577	0.15567	42.507	42.429	42.585	-0.069984	0.059734	-0.00014412	NaN	39.957	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7184900			15338	4198	9357	9408							0.004094289981367183
ISHLRLQPDP	10	Unmodified	_ISHLRLQPDP_					0	0	0			REV__ENSG00000155890|ENST00000286349|TRIM42	REV__ENSG00000155890|ENST00000286349|TRIM42	MSMS	HCT116MG_D190212_S1	1	588.3301391601562	2	588.330205	1174.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.994	1	40.994	40.494	41.494	0								0	0	0	0.92272	1	15424	15424		10.824	3.5347	1		+		15339	12711	9358	9409	14731	14731					0.06551908145934249
ISHVSEADP	9	Unmodified	_ISHVSEADP_					0	0	0			REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	477.72998046875	2	477.729989	953.445425	0.18382	8.7817E-05	-0.11166	-5.3345E-05	0.072156	3.4471E-05	477.7299474209526	19.251	0.46861	19.311	19.178	19.646	0.05983					13	8	3	0	0	0	0.14972	1	6614	6614		48.346	0.59716	1	7110900	+		15340	10080	9359	9410	14732	14732					-0.033159862415232055
ISHVSEADP	9	Unmodified	_ISHVSEADP_					0	0	0			REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	477.729989	953.445425	0.18382	8.7817E-05	-0.11166	-5.3345E-05	0.072156	3.4471E-05	477.7299474209526	19.251	0.46861	19.311	19.178	19.646	0.05983	-0.14543	0.00022239	NaN	48.346	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7110900	+		15341	10080	9359	9410							-0.033159862415232055
ISIKWLPVY	9	Unmodified	_ISIKWLPVY_					0	0	0			REV__ENST00000265343.9_1_5:132212001-132212091:-|nuORF	REV__ENST00000265343.9_1_5:132212001-132212091:-|nuORF	MSMS	HCT116MG_D190212_S3	3	559.8323974609375	2	559.83406	1117.65357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.961	1	45.649	45.149	46.149	-0.31115								0	0	0	0.76677	1	17223	17223		12.532	2.4576	1		+		15342	14673	9360	9411	14733	14733					0.09944667413492425
ISILLIQWFLK	11	Unmodified	_ISILLIQWFLK_					0	0	0			REV__SLC9C1|p.F238Lfs*8|1|0.12|ENSG00000172139|chr3:112269977-112269977|A/-|frameshift_variant	REV__SLC9C1|p.F238Lfs*8|1|0.12|ENSG00000172139|chr3:112269977-112269977|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	686.9878540039062	2	687.431399	1372.84824	1.0319	0.00070934	0.71436	0.00049107	1.7462	0.0012004	687.4316352789834	56.407	0.2622	56.124	55.993	56.255	-0.28367					7	4	2	0	0	0	0.36574	1	21387	21387		1.1933	1.1933	1	1129800	+		15343	13374	9361	9412	14734	14734					0.1767341849863442
ISINLSITI	9	Unmodified	_ISINLSITI_					0	0	0			REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	MULTI-MSMS	HCT116MG_D190212_S2	2	487.300048828125	2	487.30005	972.585547	0.46112	0.0002247	0.044923	2.1891E-05	0.50604	0.00024659	487.30002530569874	44.699	0.57522	44.614	44.428	45.004	-0.084797					27	10	4	0	0	0	0.016744	1	16963	16963		99.755	7.102	1	660650000	+		15344	13954	9362	9413	14735	14735					0.09815797762848888
ISINLSITI	9	Unmodified	_ISINLSITI_					0	0	0			REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	REV__nc|ENSG00000188467|Q71RS6-2|SLC24A5	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	487.30005	972.585547	0.19069	9.2923E-05	0.22499	0.00010964	0.41568	0.00020256	487.3001708586043	44.647	0.36617	44.647	44.41	44.777	0	0.010116	3.315E-05	NaN	99.755	17	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268930000	+		15345	13954	9362	9413							0.09815797762848888
ISKEQLKDP	9	Unmodified	_ISKEQLKDP_					0	0	0		ENST00000519245.1_1_6:112457126-112460429:-|nuORF	ENST00000519245.1_1_6:112457126-112460429:-|nuORF	ENST00000519245.1_1_6:112457126-112460429:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	353.2307434082031	3	353.201118	1056.58152	-0.065705	-2.3207E-05	0.13356	4.7175E-05	0.067858	2.3968E-05	353.2010244383701	24.736	0.62446	24.652	24.237	24.861	-0.083694					25	11	3	0	0	0	0.26696	1	8771	8771		1.0715	0.20709	1	6861100			15346	8547	9363	9414	14736	14736					0.0554970826913177
ISKSMIVKV	9	Unmodified	_ISKSMIVKV_					0	0	0		PSG6|p.E403G|1|0.35|ENSG00000170848|chr19:42906954-42906954|T/C|missense_variant;ENST00000599753.1_2_19:43406566-43412082:-|nuORF;ENSG00000170848|ENST00000187910|PSG6;nc|ENSG00000170848|Q00889|PSG6	PSG6|p.E403G|1|0.35|ENSG00000170848|chr19:42906954-42906954|T/C|missense_variant	PSG6|p.E403G|1|0.35|ENSG00000170848|chr19:42906954-42906954|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	502.8106994628906	2	502.81227	1003.60999	0.45998	0.00023128	-2.268	-0.0011404	-1.808	-0.00090909	502.81087945590434	54.429	0.40801	54.24	54.048	54.456	-0.1894					11	7	3	0	0	0	0.47809	1	20981	20981		18.146	4.2403	1	31363000			15347	5163	9364	9415	14737	14737					0.10832734644736774
ISKTQTDKKT	10	Unmodified	_ISKTQTDKKT_					0	0	0			REV__ENST00000514414.1_1_4:74951714-74951975:-|nuORF	REV__ENST00000514414.1_1_4:74951714-74951975:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	384.5400085449219	3	383.88731	1148.6401	0.104	3.9924E-05	-1.6415	-0.00063016	-1.5375	-0.00059024	383.8863581868364	27.624	0.25986	27.435	27.309	27.569	-0.18847					6	4	2	0	0	0	0.2916	1	9968	9968		14.957	11.111	1	2014500	+		15348	12179	9365	9416	14738	14738					0.07172764843608093
ISKTRWRPL	9	Unmodified	_ISKTRWRPL_					0	0	0		nc|ENSG00000120253|Q8NFH3-2|NUP43;NUP43|p.L312Ffs*4|1|0.21|ENSG00000120253|chr6:149727176-149727177|-/A|frameshift_variant;ENSG00000120253|ENST00000340413|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	MSMS	HCT116MG_D190212_S4	4	386.2384033203125	3	386.236497	1155.68766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.766	1	36.381	35.881	36.881	-0.38486								0	0	0	0.7689	1	13467	13467		2.7352	0.82882	1				15349	2690	9366	9417	14739	14739					0.11604508625100607
ISLGSIEAAI	10	Unmodified	_ISLGSIEAAI_					0	0	0			REV__CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant	REV__CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	487.2818908691406	2	487.281857	972.549162	0.24283	0.00011832	-0.50589	-0.00024651	-0.26307	-0.00012819	487.2817519385473	45.271	0.46624	45.179	44.996	45.462	-0.092472					13	8	3	0	0	0	0.079351	1	17213	17213		78.149	2.3886	1	151310000	+		15350	10094	9367	9418	14740	14740					0.061789208661252815
ISLGSIEAAI	10	Unmodified	_ISLGSIEAAI_					0	0	0			REV__CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant	REV__CASKIN1|p.L618Pfs*10|1|0.31|ENSG00000167971|chr16:2181520-2181521|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	973.5565795898438	1	973.556438	972.549162	0.69243	0.00067412	-0.1983	-0.00019306	0.49413	0.00048106	973.5568783966246	45.271	0.25983	45.179	44.996	45.256	-0.092472					7	4	2	0	0	0	0.30623	1	17241	17241		49.933	0	1	30422000	+		15351	10094	9367	9418	14741	14741					0.061789208661252815
ISLIIRCLEPD	11	Unmodified	_ISLIIRCLEPD_					0	0	0		nc|ENSG00000152092|O14525-3|ASTN1;ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1	nc|ENSG00000152092|O14525-3|ASTN1	nc|ENSG00000152092|O14525-3|ASTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	636.79638671875	2	636.355031	1270.69551	0.56457	0.00035927	-0.18067	-0.00011497	0.3839	0.0002443	636.8562662073897	56.136	0.20514	55.953	55.847	56.052	-0.18261					5	3	2	0	0	0	0.69749	1	21620	21620		22.736	5.6234	1	5005400			15352	4134	9368	9419	14742	14742					0.07098855039726004
ISLIYQTKK	9	Unmodified	_ISLIYQTKK_					0	0	0		tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	547.3984985351562	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.398	1	50.039	49.539	50.539	-0.35878								0	0	0	0.76818	1	18723	18723		7.2892	1.0834	1				15353	18624	9369	9420	14743	14743					0.11167462062576305
ISLIYQTKK	9	Unmodified	_ISLIYQTKK_					0	0	0		tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	547.3328247070312	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.348	1	52.002	51.502	52.502	-0.34538								0	0	0	0.76818	1	19512	19512		7.2892	0.56607	1				15354	18624	9369	9420	14744	14744					0.11167462062576305
ISLIYQTKK	9	Unmodified	_ISLIYQTKK_					0	0	0		tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	547.3318481445312	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.827	1	53.498	52.998	53.998	-0.32923								0	0	0	0.76694	1	20108	20108		11.64	0.81637	1				15355	18624	9369	9420	14745	14745					0.11167462062576305
ISLIYQTKK	9	Unmodified	_ISLIYQTKK_					0	0	0		tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	tr|U7T575|U7T575_FUSNUHTHtetR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00470PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	547.3323974609375	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.248	1	56.948	56.448	57.448	-0.3004								0	0	0	0.76818	1	21483	21483		7.2892	1.0834	1				15356	18624	9369	9420	14746	14746					0.11167462062576305
ISLTTVYYC	9	Carbamidomethyl (C)	_ISLTTVYYC(Carbamidomethyl (C))_	ISLTTVYYC(1)		ISLTTVYYC(51)		0	1	0			REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1119.542236328125	1	1119.53907	1118.5318	0.38407	0.00042999	0.64474	0.00072181	1.0288	0.0011518	1119.5395979525688	37.361	0.25674	37.258	37.129	37.385	-0.10318					7	4	2	0	0	0	0.13706	1	14009	14009		50.855	22.368	1	62527000	+		15357	16260	9370	9421	14747	14747	60				-0.02272742731179278
ISLTTVYYC	9	Carbamidomethyl (C)	_ISLTTVYYC(Carbamidomethyl (C))_	ISLTTVYYC(1)		ISLTTVYYC(51)		0	1	0			REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1119.5406494140625	1	1119.53907	1118.5318	0.47493	0.0005317	0.81624	0.00091382	1.2912	0.0014455	1119.5398907456954	37.513	0.31787	37.211	37.029	37.347	-0.30137					15	10	2	0	0	0	0.13706	1	13898	13898		50.855	22.368	1	47857000	+		15358	16260	9370	9421	14748	14748	60				-0.02272742731179278
ISLTTVYYC	9	Carbamidomethyl (C)	_ISLTTVYYC(Carbamidomethyl (C))_					0	1	0			REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1119.53907	1118.5318	0.38407	0.00042999	0.64474	0.00072181	1.0288	0.0011518	1119.5395979525688	37.361	0.25674	37.258	37.129	37.385	-0.10318	0.026544	-0.00041238	NaN	50.855	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62527000	+		15359	16260	9370	9421			60				-0.02272742731179278
ISLTTVYYC	9	Carbamidomethyl (C)	_ISLTTVYYC(Carbamidomethyl (C))_					0	1	0			REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1119.53907	1118.5318	0.47493	0.0005317	0.81624	0.00091382	1.2912	0.0014455	1119.5398907456954	37.513	0.31787	37.211	37.029	37.347	-0.30137	-0.020506	-0.00022037	NaN	50.855	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47857000	+		15360	16260	9370	9421			60				-0.02272742731179278
ISLTTVYYC	9	Carbamidomethyl (C)	_ISLTTVYYC(Carbamidomethyl (C))_					0	1	0			REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	REV__ENST00000524585.1_1_11:64781679-64786448:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	1119.53907	1118.5318	0.36921	0.00041335	1.5939	0.0017844	1.9631	0.0021977	1119.540514357291	37.61	0.20892	37.226	37.079	37.288	-0.3839	-0.0060388	0.00065019	NaN	50.855	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22871000	+		15361	16260	9370	9421			60				-0.02272742731179278
ISLVFLLLFLQ	11	Unmodified	_ISLVFLLLFLQ_					0	0	0		ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF;ENSG00000165282|ENST00000378617|PIGO	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MSMS	HCT116MG_D190212_S3	3	653.3297119140625	2	653.412675	1304.8108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.699	1	57.424	56.924	57.924	-0.27434								0	0	0	0.95113	1	21933	21933		5.7319	2.1354	1				15362	4760	9371	9422	14749	14749					0.17058327233053205
ISMKRSVREK	10	Unmodified	_ISMKRSVREK_					0	0	0			REV__nc|ENSG00000116703|P20941-2|PDC	REV__nc|ENSG00000116703|P20941-2|PDC	MSMS	HCT116MG_D190212_S4	4	617.7357788085938	2	617.358439	1232.70233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.006	1	51.661	51.161	52.161	-0.34538								0	0	0	0.91279	1	19373	19373		13.042	2.9685	1		+		15363	11590	9372	9423	14750	14750					0.0952821271096127
ISNIVWKY	8	Unmodified	_ISNIVWKY_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MSMS	HCT116MG_D190212_S1	1	511.7889404296875	2	511.78711	1021.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.819	1	43.819	43.319	44.319	0								0	0	0	0.85589	1	16565	16565		18.135	2.2878	1				15364	1583	9373	9424	14751	14751					0.0497494831122367
ISNLGKVMSV	10	Unmodified	_ISNLGKVMSV_					0	0	0		HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	524.2752685546875	2	524.296985	1046.57942	0.36369	0.00019068	-0.57171	-0.00029975	-0.20802	-0.00010906	524.2964838856622	17.893	0.20903	17.537	17.388	17.597	-0.35647					6	3	2	0	0	0	0.25173	1	6112	6112		34.402	7.5181	1	2687300			15365	5251	9374	9425	14752	14752					0.05798956259673105
ISNRIQARDLR	11	Unmodified	_ISNRIQARDLR_					0	0	0			REV__MEP1B|p.F267Lfs*9|1|0.21|ENSG00000141434|chr18:32208150-32208150|T/-|frameshift_variant	REV__MEP1B|p.F267Lfs*9|1|0.21|ENSG00000141434|chr18:32208150-32208150|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	447.9273376464844	3	447.928503	1340.76368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.01	1	40.94	40.44	41.44	-0.069626								0	0	0	0.95522	1	15482	15482		3.5927	0.74939	1		+		15366	12331	9375	9426	14753	14753					0.10692860734593523
ISPPMHVQL	9	Unmodified	_ISPPMHVQL_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	HCT116MG_D190212_S1	1	511.279052734375	2	511.278595	1020.54264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.557	1	42.557	42.057	43.057	0								0	0	0	0.64498	1	16055	16055		21.747	4.8044	1		+		15367	12541	9376	9427	14754	14754					0.033187044337751104
ISQAGSSYQ	9	Unmodified	_ISQAGSSYQ_					0	0	0			REV__RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	REV__RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	470.7586364746094	2	470.722164	939.429775	0.053305	2.5092E-05	-0.53749	-0.00025301	-0.48419	-0.00022792	470.7220735260288	20.905	0.67717	20.94	20.662	21.339	0.034473					14	12	2	0	0	0	0.25004	1	7378	7378		10.824	0	1	5107500	+		15368	10990	9377	9428	14755	14755					-0.04236272758578252
ISQEMERIP	9	Oxidation (M)	_ISQEM(Oxidation (M))ERIP_		ISQEM(1)ERIP		ISQEM(50)ERIP	0	0	1		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;PTPRN|p.S677Pfs*18|1|0.2|ENSG00000054356|chr2:219297293-219297293|C/-|frameshift_variant;ENST00000462351.5_1_2:220160899-220172331:-|nuORF	nc|ENSG00000054356|Q16849-3|PTPRN	nc|ENSG00000054356|Q16849-3|PTPRN	MULTI-MSMS	HCT116MG_D190212_S2	2	559.7797241210938	2	559.779156	1117.54376	0.30651	0.00017158	0.17077	9.5593E-05	0.47728	0.00026717	559.77925028286	19.059	0.72888	18.69	18.523	19.252	-0.3695					20	13	2	0	0	0	0.14171	1	6597	6597		49.933	9.6938	1	7791100			15369	1071	9378	9429	14756	14756		18			-0.010311259879699719
ISQEMERIP	9	Oxidation (M)	_ISQEM(Oxidation (M))ERIP_					0	0	1		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;PTPRN|p.S677Pfs*18|1|0.2|ENSG00000054356|chr2:219297293-219297293|C/-|frameshift_variant;ENST00000462351.5_1_2:220160899-220172331:-|nuORF	nc|ENSG00000054356|Q16849-3|PTPRN	nc|ENSG00000054356|Q16849-3|PTPRN	MULTI-MATCH	HCT116MG_D190212_S1	1		2	559.779156	1117.54376	0.3902	0.00021842	0.18856	0.00010555	0.57875	0.00032397	559.7790637891017	18.376	0.20835	18.376	18.246	18.454	0	-0.15694	1.5552E-05	NaN	49.933	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2711200			15370	1071	9378	9429				18			-0.010311259879699719
ISQLKISDRS	10	Unmodified	_ISQLKISDRS_					0	0	0		STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant;STIM2|p.H537Tfs*64|2|0.26|ENSG00000109689|chr4:27017825-27017825|C/-|frameshift_variant;nc|ENSG00000109689|Q9P246-3|STIM2;STIM2|p.S735Lfs*9|1|0.08|ENSG00000109689|chr4:27022958-27022959|-/TGTA|frameshift_variant;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant	STIM2|p.H411Tfs*13|1|0.38|ENSG00000109689|chr4:27008508-27008508|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	573.8095703125	2	573.827495	1145.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.172	1	50.172	49.672	50.672	0								0	0	0	0.91279	1	19137	19137		13.042	2.243	1				15371	2216	9379	9430	14757	14757					0.07344184563453382
ISQNDIPVPQ	10	Unmodified	_ISQNDIPVPQ_					0	0	0		ENSG00000123066|ENST00000281928|MED13L;MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MSMS	HCT116MG_D190212_S3	3	555.79541015625	2	555.793121	1109.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.115	1	46.801	46.301	47.301	-0.31405								0	0	0	0.92917	1	17684	17684		9.3831	1.473	1				15372	2787	9380	9431	14758	14758					0.02128520263727296
ISQPVPALQP	10	Unmodified	_ISQPVPALQP_					0	0	0		nc|ENSG00000179912|Q9Y2K5-3|R3HDM2	nc|ENSG00000179912|Q9Y2K5-3|R3HDM2	nc|ENSG00000179912|Q9Y2K5-3|R3HDM2	MSMS	HCT116MG_D190212_S3	3	525.3030395507812	2	525.303124	1048.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.122	1	25.994	25.494	26.494	-0.12795								0	0	0	0.85631	1	9357	9357		21.537	8.0291	1				15373	9564	9381	9432	14759	14759					0.06934315994362805
ISQYKERMPS	10	Unmodified	_ISQYKERMPS_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MSMS	HCT116MG_D190212_S1	1	619.8120727539062	2	619.81353	1237.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.817	1	42.817	42.317	43.317	0								0	0	0	0.91638	1	16160	16160		12.241	0	1				15374	6257	9382	9433	14760	14760					0.003205383117119709
ISRAEIISV	9	Unmodified	_ISRAEIISV_					0	0	0		ENST00000460194.1_1_7:100482600-100483069:+|nuORF	ENST00000460194.1_1_7:100482600-100483069:+|nuORF	ENST00000460194.1_1_7:100482600-100483069:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	494.2952880859375	2	494.295299	986.576045	0.24997	0.00012356	0.28943	0.00014307	0.5394	0.00026662	494.29535624081075	41.055	0.18721	41.055	40.946	41.133	0					6	3	2	0	0	0	0.069315	1	15465	15465		65.235	5.1611	1	18906000			15375	8040	9383	9434	14761	14761					0.08222029477326487
ISRCCCCA	8	Unmodified	_ISRCCCCA_					0	0	0		ENST00000263025.8_2_16:30125694-30127966:-|nuORF	ENST00000263025.8_2_16:30125694-30127966:-|nuORF	ENST00000263025.8_2_16:30125694-30127966:-|nuORF	MSMS	HCT116MG_D190212_S3	3	429.65863037109375	2	429.658086	857.30162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.185	1	32.899	32.399	33.399	-0.28511								0	0	0	0.8837	1	12176	12176		2.5775	0	1				15376	6873	9384	9435	14762	14762					-0.13273894140979792
ISRKKVKFIL	10	Unmodified	_ISRKKVKFIL_					0	0	0			REV__ENSG00000183671|ENST00000621141|CMKLR2	REV__ENSG00000183671|ENST00000621141|CMKLR2	MSMS	HCT116MG_D190212_S2	2	616.4142456054688	2	616.416083	1230.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.898	1	50.719	50.219	51.219	-0.17868								0	0	0	0.96377	1	19516	19516		1.6526	0.17072	1		+		15377	13773	9385	9436	14763	14763					0.21143684904268412
ISRKLGPAQ	9	Unmodified	_ISRKLGPAQ_					0	0	0			REV__ENST00000393711.7_1_11:71671815-71693810:+|nuORF	REV__ENST00000393711.7_1_11:71671815-71693810:+|nuORF	MSMS	HCT116MG_D190212_S4	4	485.2953796386719	2	485.295633	968.576714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.656	1	37.272	36.772	37.772	-0.3839								0	0	0	0.76862	1	13820	13820		5.7319	0.50118	1		+		15378	15329	9386	9437	14764	14764					0.09116868917044485
ISRKLGPAQ	9	Unmodified	_ISRKLGPAQ_					0	0	0			REV__ENST00000393711.7_1_11:71671815-71693810:+|nuORF	REV__ENST00000393711.7_1_11:71671815-71693810:+|nuORF	MSMS	HCT116MG_D190212_S4	4	485.2957763671875	2	485.295633	968.576714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.659	1	44.285	43.785	44.785	-0.37326								0	0	0	0.76655	1	16460	16460		13.042	6.8367	1		+		15379	15329	9386	9437	14765	14765					0.09116868917044485
ISRPTNLTL	9	Unmodified	_ISRPTNLTL_					0	0	0		ENST00000532851.1_1_1:110171948-110172194:+|nuORF	ENST00000532851.1_1_1:110171948-110172194:+|nuORF	ENST00000532851.1_1_1:110171948-110172194:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	508.2930908203125	2	507.800749	1013.58694	0.56368	0.00028624	-0.41184	-0.00020913	0.15184	7.7105E-05	507.8006290786897	41.592	0.25768	41.523	41.447	41.705	-0.068199					5	4	2	0	0	0	0.19273	1	15701	15701		29.082	8.628	1	10220000			15380	8640	9387	9438	14766	14766					0.08069431851606623
ISRTYYII	8	Unmodified	_ISRTYYII_					0	0	0			REV__TTC3|p.A257S|1|0.17|ENSG00000182670|chr21:37095431-37095431|G/T|missense_variant	REV__TTC3|p.A257S|1|0.17|ENSG00000182670|chr21:37095431-37095431|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	514.79150390625	2	514.792392	1027.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.441	1	47.441	46.941	47.941	0								0	0	0	0.68119	1	18025	18025		32.117	0.84863	1		+		15381	18024	9388	9439	14767	14767					0.057549309656678815
ISSFDMVIY	9	Unmodified	_ISSFDMVIY_					0	0	0		ENSG00000111666|ENST00000229266|CHPT1	ENSG00000111666|ENST00000229266|CHPT1	ENSG00000111666|ENST00000229266|CHPT1	MULTI-SECPEP	HCT116MG_D190212_S1	1	537.285400390625	2	537.762443	1073.51033	0.25217	0.00013561	-0.87002	-0.00046786	-0.61785	-0.00033225	537.7617620802968	39.683	0.20767	39.683	39.605	39.813	0					6	3	2	0	0	0	0.20553	1	14883	14883		30.225	26.28	1	5622200			15382	2304	9389	9440	14768	14768					-0.02348127759887575
ISSFDRLQP	9	Unmodified	_ISSFDRLQP_					0	0	0			REV__ENST00000468761.1_1_1:28099767-28128332:+|nuORF	REV__ENST00000468761.1_1_1:28099767-28128332:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7825317382812	2	531.782556	1061.55056	0.44172	0.0002349	-0.26188	-0.00013926	0.17984	9.5636E-05	531.7822274556846	27.817	0.20441	27.475	27.398	27.602	-0.34201					5	3	2	0	0	0	0.24895	1	10157	10157		36.127	1.7253	1	18756000	+		15383	11623	9390	9441	14769	14769					0.022245549549097632
ISSFDRLQP	9	Unmodified	_ISSFDRLQP_					0	0	0			REV__ENST00000468761.1_1_1:28099767-28128332:+|nuORF	REV__ENST00000468761.1_1_1:28099767-28128332:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	531.782556	1061.55056	0.44172	0.0002349	-0.26188	-0.00013926	0.17984	9.5636E-05	531.7822274556846	27.817	0.20441	27.475	27.398	27.602	-0.34201	0.0024009	0.00021712	NaN	36.127	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18756000	+		15384	11623	9390	9441							0.022245549549097632
ISSFDRLQP	9	Unmodified	_ISSFDRLQP_					0	0	0			REV__ENST00000468761.1_1_1:28099767-28128332:+|nuORF	REV__ENST00000468761.1_1_1:28099767-28128332:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	531.782556	1061.55056	0.6579	0.00034986	-0.60811	-0.00032338	0.049791	2.6478E-05	531.7823290576101	27.658	0.25986	27.47	27.309	27.569	-0.18847	-0.0024009	-0.00015112	NaN	36.127	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7900100	+		15385	11623	9390	9441							0.022245549549097632
ISSSLAVVDLI	11	Unmodified	_ISSSLAVVDLI_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MSMS	HCT116MG_D190212_S1	1	558.7809448242188	2	558.829172	1115.64379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.04	1	57.04	56.54	57.54	0								0	0	0	0.9387	1	21941	21941		12.241	1.4167	1				15386	1819	9391	9442	14770	14770					0.0905943461748393
ISTKSPDLEPV	11	Unmodified	_ISTKSPDLEPV_					0	0	0		CON__P01045-1;CON__Q2KJ62;CON__P01044-1	CON__P01045-1	CON__P01045-1	MULTI-SECPEP	HCT116MG_D190212_S1	1	592.866943359375	2	593.321711	1184.62887	0.73624	0.00043683	-0.91862	-0.00054504	-0.18238	-0.00010821	593.3212746911024	45.968	0.26138	45.968	45.765	46.027	0					7	4	2	0	0	0	0.36308	1	17426	17426		4.5289	0	1	8036400		+	15387	544	9392	9443	14771	14771					0.043939427494933625
ISTLLFCLIA	10	Unmodified	_ISTLLFCLIA_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;nc|ENSG00000090020|P19634-2|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	MULTI-MSMS	HCT116MG_D190212_S1	1	547.320068359375	2	547.319928	1092.6253	0.36244	0.00019837	0.24339	0.00013321	0.60583	0.00033158	547.3200014146796	47.958	2.1316	47.958	47.309	49.44	0					67	41	3	0	0	0	0.82332	1	18666	18666		10.074	0	1	47125000			15388	1536	9393	9444	14772	14772					0.08269601441929808
ISTLQSGIV	9	Unmodified	_ISTLQSGIV_					0	0	0			REV__ENST00000516201.1_2:234184409-234184622:+|nuORF	REV__ENST00000516201.1_2:234184409-234184622:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	459.26885986328125	2	459.26875	916.522947	0.15562	7.1473E-05	-0.063179	-2.9016E-05	0.092446	4.2457E-05	459.26870282433356	54.773	0.25638	54.585	54.406	54.662	-0.18797					9	4	3	0	0	0	0.035349	1	21100	21100		81.89	3.7408	1	66980000	+		15389	16212	9394	9445	14773	14773					0.06134651694662807
ISTTHTEEN	9	Unmodified	_ISTTHTEEN_					0	0	0			REV__RAD51AP2|p.K861Ifs*17|1|0.05|ENSG00000214842|chr2:17515831-17515834|TCTT/-|frameshift_variant	REV__RAD51AP2|p.K861Ifs*17|1|0.05|ENSG00000214842|chr2:17515831-17515834|TCTT/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	516.2368774414062	2	516.235635	1030.45672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.56	1	37.258	36.758	37.758	-0.30137								0	0	0	0.74436	1	13917	13917		16.942	0	1		+		15390	14271	9395	9446	14774	14774					-0.057292089380325706
ISVAHRLSTVR	11	Unmodified	_ISVAHRLSTVR_					0	0	0		ABCB11|p.Q1053Nfs*44|1|0.2|ENSG00000073734|chr2:168932434-168932434|A/-|frameshift_variant;ABCB11|p.K1070Nfs*27|1|0.17|ENSG00000073734|chr2:168932380-168932380|T/-|frameshift_variant;ABCB11|p.V1293Wfs*2|2|0.26|ENSG00000073734|chr2:168923711-168923711|C/-|frameshift_variant;ENSG00000073734|ENST00000650372|ABCB11	ABCB11|p.Q1053Nfs*44|1|0.2|ENSG00000073734|chr2:168932434-168932434|A/-|frameshift_variant	ABCB11|p.Q1053Nfs*44|1|0.2|ENSG00000073734|chr2:168932434-168932434|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	619.8699951171875	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.525	1	52.525	52.025	53.025	0								0	0	0	0.95636	1	20092	20092		2.9952	0	1				15391	8	9396	9447	14775	14775					0.11614974819894996
ISWIPPEQSNG	11	Unmodified	_ISWIPPEQSNG_					0	0	0		USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	614.3036499023438	2	614.303852	1226.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.287	1	52.287	51.787	52.787	0								0	0	0	0.94538	1	19995	19995		8.7454	0	1				15392	1012	9397	9448	14776	14776					-0.011080947075242875
ITAQRHRRYKA	11	Unmodified	_ITAQRHRRYKA_					0	0	0		ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	MSMS	HCT116MG_D190212_S4	4	700.406494140625	2	700.405101	1398.79565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.672	1	55.36	54.86	55.86	-0.312								0	0	0	0.9465	1	20852	20852		8.1555	1.0538	1				15393	5500	9398	9449	14777	14777					0.11220273208391518
ITASNPQP	8	Unmodified	_ITASNPQP_					0	0	0			REV__ENST00000558608.1_1_15:85189295-85191289:-|nuORF	REV__ENST00000558608.1_1_15:85189295-85191289:-|nuORF	MSMS	HCT116MG_D190212_S1	1	414.2178649902344	2	414.216517	826.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.795	1	16.795	16.295	17.295	0								0	0	0	0.81076	1	5676	5676		21.747	1.293	1		+		15394	16475	9399	9450	14778	14778					-0.0016705006205484096
ITATIAKRK	9	Unmodified	_ITATIAKRK_					0	0	0		MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant;MAP4K5|p.R265Dfs*8|1|0.29|ENSG00000012983|chr14:50464078-50464078|T/-|frameshift_variant;ENSG00000012983|ENST00000682126|MAP4K5;nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3	MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant	MAP4K3|p.R261Kfs*5|1|0.41|ENSG00000011566|chr2:39325755-39325756|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	501.7262268066406	2	501.326934	1000.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.897	1	55.609	55.109	56.109	-0.28773								0	0	0	0.76818	1	21208	21208		7.2892	0	1				15395	898	9400	9451	14779	14779					0.13902014985217193
ITDEEATKSSY	11	Unmodified	_ITDEEATKSSY_					0	0	0		nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;PFKM|p.A266Efs*59|1|0.04|ENSG00000152556|chr12:48134991-48134992|-/AGGGATTT|frameshift_variant;ENST00000546964.5_1_12:48513149-48528944:+|nuORF	nc|ENSG00000152556|P08237-2|PFKM	nc|ENSG00000152556|P08237-2|PFKM	MSMS	HCT116MG_D190212_S2	2	622.288330078125	2	622.288065	1242.56158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.126	1	22.741	22.241	23.241	-0.3852								0	0	0	0.0014675	1	8227	8227		96.034	48.44	1				15396	4154	9401	9452	14780	14780					-0.05000132252121148
ITDEFVKQKY	10	Unmodified	_ITDEFVKQKY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENST00000475183.1_1_X:54953428-54957230:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-2|TRO;ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;ENSG00000067445|ENST00000173898|TRO;TRO|p.S1034Rfs*10|1|0.07|ENSG00000067445|chrX:54929826-54929826|C/-|frameshift_variant	nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENST00000492706.5_1_X:54953428-54957450:+|nuORF	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	HCT116MG_D190212_S2	2	635.8380737304688	2	635.837528	1269.6605	0.50818	0.00032312	0.3101	0.00019718	0.81828	0.00052029	635.8375053574924	32.163	0.20797	31.933	31.838	32.046	-0.23009					5	3	2	0	0	0	0.57664	1	11919	11919		29.841	5.82	1	9586200			15397	1836;1185	9402	9453	14781	14781					0.036459355034367036
ITDGNKVRV	9	Unmodified	_ITDGNKVRV_					0	0	0			REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	REV__tr|U7T2Q1|U7T2Q1_FUSNUGeneralsecretionpathwayproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00785PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	501.2904052734375	2	501.290548	1000.56654	0.49076	0.00024602	-0.0017135	-8.5898E-07	0.48905	0.00024516	501.2904648259729	47.011	1.9761	46.641	45.956	47.932	-0.37038					96	53	4	0	0	0	0.67781	1	17389	17389		6.7232	2.7788	1	13843000	+		15398	17929	9403	9454	14782	14782					0.06628261191804086
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	HCT116MG_D190212_S1	1	509.7636413574219	2	509.763832	1017.51311	-0.28133	-0.00014341	-0.23518	-0.00011989	-0.51651	-0.0002633	509.7636989487997	38.514	0.31283	38.514	38.332	38.644	0					14	5	3	0	0	0	0.057285	1	14412	14412		71.134	26.727	1	75539000			15399	3167	9404	9455	14783	14783					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	HCT116MG_D190212_S2	2	509.7639465332031	2	509.763832	1017.51311	0.26268	0.00013391	-0.061831	-3.1519E-05	0.20085	0.00010239	509.76378281333916	38.55	0.57875	38.466	38.278	38.857	-0.084618					28	10	4	0	0	0	0.057285	1	14484	14484		71.134	23.385	1	569860000			15400	3167	9404	9455	14784	14784					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	HCT116MG_D190212_S2	2	1018.52099609375	1	1018.52039	1017.51311	0.69532	0.0007082	-0.62379	-0.00063534	0.071532	7.2857E-05	1018.5201157643903	38.553	0.26736	38.469	38.33	38.597	-0.084618					9	4	3	0	0	0	0.010304	1	14487	14487		112.59	61.738	1	74459000			15401	3167	9404	9455	14785	14785					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	HCT116MG_D190212_S3	3	509.76397705078125	2	509.763832	1017.51311	0.076854	3.9177E-05	0.16023	8.1682E-05	0.23709	0.00012086	509.7638944429636	38.836	0.57201	38.534	38.3	38.872	-0.30137					28	10	5	0	0	0	0.035914	1	14379	14379		81.613	29.345	1	107700000			15402	3167	9404	9455	14786	14786					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	HCT116MG_D190212_S3	3	1018.5208129882812	1	1018.52039	1017.51311	0.51663	0.00052619	0.26848	0.00027345	0.7851	0.00079964	1018.5208455355676	38.836	0.36391	38.534	38.352	38.716	-0.30137					9	6	2	0	0	0	0.016134	1	14410	14410		100.37	58.277	1	5332900			15403	3167	9404	9455	14787	14787					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	HCT116MG_D190212_S4	4	509.7638854980469	2	509.763832	1017.51311	0.14078	7.1766E-05	0.068304	3.4819E-05	0.20909	0.00010658	509.76383677470045	38.946	0.34248	38.565	38.388	38.73	-0.38163					15	6	3	0	0	0	0.057285	1	14274	14274		71.134	26.727	1	35371000			15404	3167	9404	9455	14788	14788					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1018.52039	1017.51311	0.20243	0.00020617	-0.20178	-0.00020552	0.00064459	6.5653E-07	1018.5194726529164	38.55	0.20871	38.55	38.384	38.592	0	0.020941	-0.00020064	NaN	112.59	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5991000			15405	3167	9404	9455							0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1018.52039	1017.51311	0.55271	0.00056295	0.1556	0.00015848	0.70831	0.00072143	1018.5204679582513	38.946	0.2002	38.565	38.44	38.64	-0.38163	0.035153	0.00016335	NaN	112.59	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2444700			15406	3167	9404	9455							0.005054636892964481
ITDHGVEYL	9	Unmodified	_ITDHGVEYL_					0	0	0		FBXL7|p.K399N|1|0.14|ENSG00000183580|chr5:15936907-15936907|G/T|missense_variant;nc|ENSG00000183580|Q9UJT9-2|FBXL7;ENSG00000183580|ENST00000504595|FBXL7	FBXL7|p.K399N|1|0.14|ENSG00000183580|chr5:15936907-15936907|G/T|missense_variant	FBXL7|p.K399N|1|0.14|ENSG00000183580|chr5:15936907-15936907|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	523.6325073242188	2	523.761289	1045.50803	0.36731	0.00019238	-0.33615	-0.00017606	0.031164	1.6323E-05	523.761054398175	45.212	0.26102	45.212	45.034	45.295	0					10	4	3	0	0	0	0.59184	1	17059	17059		11.64	0.81637	1	38849000			15407	5725	9405	9456	14789	14789					-0.01290840173351171
ITDKIIDLV	9	Unmodified	_ITDKIIDLV_					0	0	0		nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1	nc|ENSG00000101384|P78504-2|JAG1	nc|ENSG00000101384|P78504-2|JAG1	MSMS	HCT116MG_D190212_S2	2	515.3134765625	2	515.313158	1028.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.735	1	55.549	55.049	56.049	-0.18565								0	0	0	0.46109	1	21491	21491		30.637	5.2372	1				15408	1784	9406	9457	14790	14790					0.098600669343341
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	HCT116MG_D190212_S1	1	512.7693481445312	2	512.769114	1023.52368	0.56108	0.0002877	-0.035683	-1.8297E-05	0.5254	0.00026941	512.7690376576271	29.295	0.52174	29.295	28.955	29.477	0					15	9	2	0	0	0	0.0096523	1	10704	10704		114.2	28.56	1	51933000			15409	4605	9407	9458	14791	14791					0.012854463436951846
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7688598632812	2	512.769114	1023.52368	0.44629	0.00022884	0.174	8.9224E-05	0.62029	0.00031807	512.7690825594407	29.719	0.46501	29.418	29.134	29.599	-0.30095					23	8	4	0	0	0	0.0096523	1	10881	10881		114.2	28.56	1	264980000			15410	4605	9407	9458	14792	14792					0.012854463436951846
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	HCT116MG_D190212_S2	2	1024.5321044921875	1	1024.53095	1023.52368	0.80232	0.000822	0.030441	3.1188E-05	0.83276	0.00085319	1024.5310022033411	29.719	0.25837	29.418	29.289	29.547	-0.30095					7	4	2	0	0	0	0.0043772	1	10910	10910		145.13	59.488	1	39405000			15411	4605	9407	9458	14793	14793					0.012854463436951846
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7692260742188	2	512.769114	1023.52368	0.34753	0.0001782	-0.06304	-3.2325E-05	0.28449	0.00014588	512.7689760092424	29.763	0.53014	29.526	29.344	29.874	-0.23655					21	9	4	0	0	0	0.0096523	1	10819	10819		114.2	28.56	1	81389000			15412	4605	9407	9458	14794	14794					0.012854463436951846
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	HCT116MG_D190212_S3	3	1024.530517578125	1	1024.53095	1023.52368	0.76489	0.00078365	-0.96278	-0.0009864	-0.19789	-0.00020274	1024.5300734458558	29.778	0.16181	29.541	29.448	29.61	-0.23655					4	2	2	0	0	0	0.0068427	1	10855	10855		121.53	42.806	1	3236200			15413	4605	9407	9458	14795	14795					0.012854463436951846
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	HCT116MG_D190212_S4	4	512.7691040039062	2	512.769114	1023.52368	0.19225	9.8579E-05	0.11701	5.9998E-05	0.30926	0.00015858	512.7690844893782	29.928	0.31191	29.571	29.389	29.701	-0.3571					15	5	4	0	0	0	0.0096523	1	10829	10829		114.2	18.091	1	23825000			15414	4605	9407	9458	14796	14796					0.012854463436951846
ITDLNSDQY	9	Unmodified	_ITDLNSDQY_					0	0	0		SAMD8|p.G121R|1|0.27|ENSG00000156671|chr10:75150889-75150889|G/A|missense_variant;nc|ENSG00000156671|Q96LT4-2|SAMD8;ENSG00000156671|ENST00000542569|SAMD8	SAMD8|p.G121R|1|0.27|ENSG00000156671|chr10:75150889-75150889|G/A|missense_variant	SAMD8|p.G121R|1|0.27|ENSG00000156671|chr10:75150889-75150889|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7467041015625	2	534.745836	1067.47712	0.55451	0.00029652	0.94778	0.00050682	1.5023	0.00080334	534.7461246775523	33.36	0.18874	33.07	33.011	33.2	-0.29013					5	3	2	0	0	0	0.21258	1	12272	12272		39.95	20.693	1	4325200			15415	4294	9408	9459	14797	14797					-0.053920382782280285
ITDLPDHLLSY	11	Unmodified	_ITDLPDHLLSY_					0	0	0		ENST00000406829.2_2_7:7812042-7917166:+|nuORF;ENSG00000219545|ENST00000682710|UMAD1	ENST00000406829.2_2_7:7812042-7917166:+|nuORF	ENST00000406829.2_2_7:7812042-7917166:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	644.3367309570312	2	643.834985	1285.65542	0.59521	0.00038322	-0.24431	-0.00015729	0.3509	0.00022592	644.3364060873458	51.451	0.25187	51.451	51.297	51.549	0					6	4	2	0	0	0	0.01748	1	19671	19671		133.05	47.411	1	26943000			15416	6463	9409	9460	14798	14798					0.024016316408051352
ITDLPDHLLSY	11	Unmodified	_ITDLPDHLLSY_					0	0	0		ENST00000406829.2_2_7:7812042-7917166:+|nuORF;ENSG00000219545|ENST00000682710|UMAD1	ENST00000406829.2_2_7:7812042-7917166:+|nuORF	ENST00000406829.2_2_7:7812042-7917166:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	643.8358764648438	2	643.834985	1285.65542	0.65683	0.00042289	0.25139	0.00016186	0.90822	0.00058475	643.8351109091867	51.683	0.35888	51.499	51.321	51.68	-0.18369					18	6	4	0	0	0	4.7318E-07	1	19823	19823		185.05	81.697	1	115040000			15417	6463	9409	9460	14799	14799					0.024016316408051352
ITDLPIKL	8	Unmodified	_ITDLPIKL_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S2	2	456.7918701171875	2	456.791861	911.569169	0.21249	9.7063E-05	0.024267	1.1085E-05	0.23675	0.00010815	456.79179501270687	51.731	0.51385	51.547	51.373	51.887	-0.18368					21	9	4	0	0	0	0.030564	1	19853	19853		144.35	15.985	1	90634000			15418	6126	9410	9461	14800	14800					0.10984716596738053
ITDLPIKL	8	Unmodified	_ITDLPIKL_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S3	3	456.7919921875	2	456.791861	911.569169	0.30386	0.0001388	-0.020099	-9.1812E-06	0.28376	0.00012962	456.79175633419004	51.981	0.29224	51.671	51.489	51.781	-0.30927					10	5	2	0	0	0	0.030564	1	19648	19648		144.35	28.658	1	13209000			15419	6126	9410	9461	14801	14801					0.10984716596738053
ITDLPIKL	8	Unmodified	_ITDLPIKL_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MATCH	HCT116MG_D190212_S1	1		2	456.791861	911.569169	0.015199	6.9427E-06	-0.15139	-6.9155E-05	-0.13619	-6.2212E-05	456.79182148276976	51.626	0.1517	51.626	51.5	51.652	0	0.011377	-7.8473E-05	NaN	144.35	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13030000			15420	6126	9410	9461							0.10984716596738053
ITDNKSIP	8	Unmodified	_ITDNKSIP_					0	0	0			REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	REV__tr|U7SU03|U7SU03_FUSNUDisulfideisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01050PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	444.24371337890625	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.474	1	40.474	39.974	40.974	0								0	0	0	0.8837	1	15213	15213		13.508	2.3934	1		+		15421	17814	9411	9462	14802	14802					0.028217921435157223
ITDNSNLCYY	10	Carbamidomethyl (C)	_ITDNSNLC(Carbamidomethyl (C))YY_	ITDNSNLC(1)YY		ITDNSNLC(52)YY		0	1	0		ERBB4|p.H801Mfs*27|1|0.39|ENSG00000178568|chr2:211561989-211561989|G/-|frameshift_variant;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	ERBB4|p.H801Mfs*27|1|0.39|ENSG00000178568|chr2:211561989-211561989|G/-|frameshift_variant	ERBB4|p.H801Mfs*27|1|0.39|ENSG00000178568|chr2:211561989-211561989|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	631.7721557617188	2	631.771528	1261.5285	0.63424	0.0004007	0.9586	0.00060562	1.5928	0.0010063	631.7714177798503	44.957	0.41797	44.865	44.735	45.153	-0.092472					14	7	3	0	0	0	0.28726	1	17119	17119		51.63	13.454	1	17109000			15422	5506	9412	9463	14803	14803	32				-0.09180037575856659
ITDPDPDIRY	10	Unmodified	_ITDPDPDIRY_					0	0	0		MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant;ENSG00000198793|ENST00000361445|MTOR	MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant	MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	602.7962036132812	2	602.79586	1203.57717	0.68197	0.00041109	0.087595	5.2802E-05	0.76957	0.00046389	602.7956780989185	36.919	0.25807	36.804	36.653	36.912	-0.11478					7	4	2	0	0	0	0.12401	1	13840	13840		69.338	36.553	1	19338000			15423	6273	9413	9464	14804	14804					-0.016478009444199415
ITDPDPDIRY	10	Unmodified	_ITDPDPDIRY_					0	0	0		MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant;ENSG00000198793|ENST00000361445|MTOR	MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant	MTOR|p.F821Lfs*34|1|0.28|ENSG00000198793|chr1:11232487-11232487|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	602.79586	1203.57717	0.59501	0.00035867	0.33337	0.00020095	0.92837	0.00055962	602.7958753150801	37.148	0.15599	36.847	36.769	36.925	-0.30137	0.021472	0.00019919	NaN	69.338	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2216100			15424	6273	9413	9464							-0.016478009444199415
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S1	1	1012.4237060546875	1	1012.4218	1011.41452	0.86591	0.00087666	-0.30733	-0.00031115	0.55858	0.00056551	1012.421450934545	22.666	0.26043	22.666	22.533	22.793	0					10	4	3	0	0	0	0.0067688	1	8048	8048		122.18	72.246	1	14382000			15425	1620	9414	9465	14805	14805					-0.09073184346425478
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	HCT116MG_D190212_S1	1	506.7147521972656	2	506.714536	1011.41452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.694	1	22.694	22.194	23.194	0								0	0	0	0.026669	1	8047	8047		85.642	45.193	1				15426	1620	9414	9465	14806	14806					-0.09073184346425478
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S2	2	1012.4223022460938	1	1012.4218	1011.41452	0.61726	0.00062492	0.048938	4.9546E-05	0.66619	0.00067447	1012.4216926909247	22.981	0.46831	22.596	22.414	22.882	-0.3852					16	8	3	0	0	0	0.0035933	1	8172	8172		176.84	118.16	1	59812000			15427	1620	9414	9465	14807	14807					-0.09073184346425478
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S2	2	506.71478271484375	2	506.714536	1011.41452	0.36441	0.00018465	0.097988	4.9652E-05	0.4624	0.0002343	506.71448364937055	22.929	0.57248	22.544	22.258	22.83	-0.3852					19	10	3	0	0	0	0.041798	1	8173	8173		78.728	40.754	1	44605000			15428	1620	9414	9465	14808	14808					-0.09073184346425478
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S3	3	506.714599609375	2	506.714536	1011.41452	0.19498	9.88E-05	0.11667	5.9121E-05	0.31166	0.00015792	506.7145238852105	22.744	0.50842	22.725	22.439	22.948	-0.018869					18	9	3	0	0	0	0.020353	2	8001	7986;8001		96.111	58.137	1	28598000			15429	1620	9414	9465	14809;14810	14810					-0.09073184346425478
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.Y787Lfs*2|1|0.17|ENSG00000096696|chr6:7574715-7574716|-/T|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S3	3	1012.4229125976562	1	1012.4218	1011.41452	0.52812	0.00053468	0.087691	8.878E-05	0.61581	0.00062346	1012.4219074118065	22.748	0.50816	22.729	22.543	23.051	-0.018869					17	9	3	0	0	0	0.0050238	1	8000	8000		137.42	95.584	1	26750000			15430	1620	9414	9465	14811	14811					-0.09073184346425478
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S1	1	545.2822265625	2	545.282389	1088.55022	-0.37104	-0.00020232	0.084678	4.6173E-05	-0.28636	-0.00015615	545.2823679430264	38.253	0.52098	38.253	38.019	38.54	0					25	9	4	0	0	0	0.0034637	1	14297	14297		171.47	100.33	1	447520000			15431	5125	9415	9466	14812	14812					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S1	1	1089.5567626953125	1	1089.5575	1088.55022	-0.30648	-0.00033393	-0.46398	-0.00050553	-0.77046	-0.00083946	1089.5566087992745	38.267	0.26044	38.267	38.123	38.384	0					9	4	3	0	0	0	0.013181	1	14323	14323		136.33	98.359	1	19686000			15432	5125	9415	9466	14813	14813					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S2	2	545.2825927734375	2	545.282389	1088.55022	0.36893	0.00020117	0.0097378	5.3098E-06	0.37867	0.00020648	545.2824030046876	38.285	0.8374	38.192	38.011	38.849	-0.09301					46	15	6	0	0	0	0.0004259	1	14358	14358		187.93	116.8	1	1706499999.9999998			15433	5125	9415	9466	14814	14814					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S2	2	1089.5577392578125	1	1089.5575	1088.55022	0.4601	0.00050131	-0.006354	-6.923E-06	0.45375	0.00049439	1089.55723746415	38.286	0.41694	38.193	38.011	38.428	-0.09301					15	7	3	0	0	0	0.013181	1	14381	14381		136.33	98.359	1	133120000			15434	5125	9415	9466	14815	14815					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S3	3	545.2826538085938	2	545.282389	1088.55022	0.33257	0.00018135	0.18816	0.0001026	0.52073	0.00028395	545.2824266131172	38.574	0.62401	38.272	38.04	38.664	-0.30137					35	11	5	0	0	0	0.0004259	1	14271	14271		187.93	116.8	1	286220000			15435	5125	9415	9466	14816	14816					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S3	3	1089.557373046875	1	1089.5575	1088.55022	0.28344	0.00030882	0.37072	0.00040392	0.65415	0.00071274	1089.557637977345	38.555	0.20793	38.254	38.144	38.352	-0.30137					6	3	2	0	0	0	0.018611	1	14300	14300		123.45	92.814	1	7617800			15436	5125	9415	9466	14817	14817					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MSMS	HCT116MG_D190212_S3	3	545.3065795898438	2	545.282389	1088.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.023	1	38.721	38.221	39.221	-0.30137								0	0	0	0.69311	1	14475	14475		37.974	13.953	1				15437	5125	9415	9466	14818	14818					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S4	4	545.2830200195312	2	545.282389	1088.55022	0.39195	0.00021372	0.22401	0.00012215	0.61596	0.00033587	545.2824228232272	38.691	0.49402	38.31	38.096	38.591	-0.38163					24	9	4	0	0	0	0.51573	1	14158	14158		34.102	16.99	1	65277000			15438	5125	9415	9466	14819	14819					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-SECPEP	HCT116MG_D190212_S4	4	1089.557373046875	1	1089.5575	1088.55022	0.42924	0.00046769	-1.1147	-0.0012146	-0.68548	-0.00074687	1089.555848146973	38.639	0.20071	38.258	38.187	38.388	-0.38163					5	3	2	0	0	0	0.14651	1	14207	14207		78.149	53.158	1	1587500			15439	5125	9415	9466	14820	14820					0.009491352350551097
ITDTTRDVY	9	Unmodified	_ITDTTRDVY_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2695922851562	2	542.269478	1082.5244	0.53988	0.00029276	-0.56697	-0.00030745	-0.027093	-1.4692E-05	542.2691995259264	27.076	0.26431	26.723	26.554	26.818	-0.35254					7	4	2	0	0	0	0.16285	1	9844	9844		45.74	14.472	1	5664100			15440	4500	9416	9467	14821	14821					-0.013557590072423409
ITDTTRDVY	9	Unmodified	_ITDTTRDVY_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	542.269478	1082.5244	0.51168	0.00027747	0.14648	7.9429E-05	0.65815	0.00035689	542.2693498400482	26.704	0.20823	26.704	26.553	26.761	0	-0.025192	0.00038296	NaN	45.74	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2287900			15441	4500	9416	9467							-0.013557590072423409
ITDTTRDVY	9	Unmodified	_ITDTTRDVY_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	542.269478	1082.5244	0.50033	0.00027131	-0.12757	-6.9175E-05	0.37277	0.00020214	542.2692526560552	26.929	0.20845	26.76	26.651	26.859	-0.16933	0.030913	8.5749E-05	NaN	45.74	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1768900			15442	4500	9416	9467							-0.013557590072423409
ITDYREYH	8	Unmodified	_ITDYREYH_					0	0	0		TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	548.75732421875	2	548.756538	1095.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.826	1	33.633	33.133	34.133	-0.19297								0	0	0	0.8837	1	12564	12564		14.582	1.5392	1				15443	3154	9417	9468	14822	14822					-0.04540608458864881
ITEDKTELY	9	Unmodified	_ITEDKTELY_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	556.2789916992188	2	556.279512	1110.54447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.109	1	31.734	31.234	32.234	-0.37529								0	0	0	0.24671	1	11681	11681		43.982	7.4756	1				15444	5305	9418	9469	14823	14823					-0.006380080672670374
ITELNLPQLE	10	Unmodified	_ITELNLPQLE_					0	0	0		nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000550069.1_1_12:53689351-53689733:+|nuORF;nc|ENSG00000123349|Q99471-2|PFDN5;ENST00000551223.5_1_12:53689351-53690320:+|nuORF;ENST00000550513.1_1_12:53689351-53689741:+|nuORF	nc|ENSG00000123349|Q99471-3|PFDN5	nc|ENSG00000123349|Q99471-3|PFDN5	MSMS	HCT116MG_D190212_S4	4	585.7511596679688	2	585.324254	1168.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.788	1	30.423	29.923	30.923	-0.36416								0	0	0	0.75654	1	11147	11147		34.402	4.5611	1				15445	2796	9419	9470	14824	14824					0.05638246612079456
ITFHILPGTT	10	Unmodified	_ITFHILPGTT_					0	0	0		ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.2109069824219	3	367.209725	1098.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.709	1	57.414	56.914	57.914	-0.29465								0	0	0	0.95507	1	21669	21669		1.7423	0	1				15446	8340	9420	9471	14825	14825					0.06198602511426543
ITFTCLKN	8	Unmodified	_ITFTCLKN_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2520751953125	2	470.252046	938.489538	0.1985	9.3344E-05	0.21463	0.00010093	0.41313	0.00019428	470.2522468747621	37.001	0.36069	36.886	36.705	37.066	-0.11478					9	6	2	0	0	0	0.73076	1	13838	13838		19.439	19.439	1	47340000	+		15447	11857	9421	9472	14826	14826					0.017833266511161128
ITFTGNHTNP	10	Unmodified	_ITFTGNHTNP_					0	0	0			REV__ENST00000570311.1_1_17:45097119-45126782:+|nuORF	REV__ENST00000570311.1_1_17:45097119-45126782:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	551.2703247070312	2	551.269813	1100.52507	0.36469	0.00020104	0.85932	0.00047372	1.224	0.00067476	551.2702317360031	36.836	0.41594	36.535	36.249	36.665	-0.30113					14	7	3	0	0	0	0.64492	1	13630	13630		24.991	24.991	1	11179000	+		15448	13551	9422	9473	14827	14827					-0.02116919567538389
ITFTGNHTNP	10	Unmodified	_ITFTGNHTNP_					0	0	0			REV__ENST00000570311.1_1_17:45097119-45126782:+|nuORF	REV__ENST00000570311.1_1_17:45097119-45126782:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	551.2584228515625	2	551.269813	1100.52507	0.36469	0.00020104	0.85932	0.00047372	1.224	0.00067476	551.2702317360031	36.836	0.41594	36.535	36.249	36.665	-0.30113					14	7	3	0	0	0	0.28573	1	13610	13610		20.415	7.3721	1	11179000	+		15449	13551	9422	9473	14828	14828					-0.02116919567538389
ITGAVKGY	8	Unmodified	_ITGAVKGY_					0	0	0			REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	404.7317810058594	2	404.731803	807.449054	0.038701	1.5663E-05	0.13153	5.3232E-05	0.17023	6.8896E-05	404.73173046833585	24.388	0.52104	24.008	23.718	24.239	-0.38003					14	9	3	0	0	0	0.46267	1	8739	8739		44.407	4.4497	1	96463000	+		15450	17683	9423	9474	14829	14829					0.037627283229994646
ITGAVKGY	8	Unmodified	_ITGAVKGY_					0	0	0			REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	REV__tr|U7SIY0|U7SIY0_FUSNUAminobenzoyl-glutamatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02271PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	404.731803	807.449054	0.038701	1.5663E-05	0.13153	5.3232E-05	0.17023	6.8896E-05	404.73173046833585	24.388	0.52104	24.008	23.718	24.239	-0.38003	0.11324	6.3974E-06	NaN	44.407	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96463000	+		15451	17683	9423	9474							0.037627283229994646
ITGDDLAYL	9	Unmodified	_ITGDDLAYL_					0	0	0			REV__ENST00000473875.5_1_1:244724068-244773670:+|nuORF	REV__ENST00000473875.5_1_1:244724068-244773670:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	980.4932861328125	1	980.493504	979.486227	1.0542	0.0010336	-0.048667	-4.7718E-05	1.0055	0.00098593	980.4934873855058	47.743	0.31007	47.61	47.48	47.79	-0.13281					9	5	2	0	0	0	0.071351	1	18226	18226		64.236	0	1	56682000	+		15452	13638	9424	9475	14830	14830					-0.004336449219067617
ITGDDLAYL	9	Unmodified	_ITGDDLAYL_					0	0	0			REV__ENST00000473875.5_1_1:244724068-244773670:+|nuORF	REV__ENST00000473875.5_1_1:244724068-244773670:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	980.493504	979.486227	1.0542	0.0010336	-0.048667	-4.7718E-05	1.0055	0.00098593	980.4934873855058	47.743	0.31007	47.61	47.48	47.79	-0.13281	-0.041427	-3.5435E-05	NaN	64.236	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56682000	+		15453	13638	9424	9475							-0.004336449219067617
ITGFKEYSTR	10	Unmodified	_ITGFKEYSTR_					0	0	0			REV__TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant	REV__TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	601.8165283203125	2	601.31422	1200.61389	1.4069	0.00084602	-0.79317	-0.00047694	0.61378	0.00036907	601.3135542949581	46.837	0.65545	46.465	46.14	46.795	-0.37134					28	12	3	0	0	0	0.7974	1	17273	17273		12.241	1.4411	1	8338200	+		15454	11369	9425	9476	14831	14831					0.021604956721375856
ITGGKKGP	8	Unmodified	_ITGGKKGP_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MSMS	HCT116MG_D190212_S3	3	379.2305908203125	2	379.231971	756.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.924	1	42.619	42.119	43.119	-0.30472								0	0	0	0.8837	1	16005	16005		2.5775	0	1				15455	5980	9426	9477	14832	14832					0.061421480428521136
ITGKKAPGCV	10	Unmodified	_ITGKKAPGCV_					0	0	0		nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;NFIC|p.P456Lfs*36|1|0.3|ENSG00000141905|chr19:3453855-3453855|C/-|frameshift_variant;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC	nc|ENSG00000141905|P08651-4|NFIC	nc|ENSG00000141905|P08651-4|NFIC	MSMS	HCT116MG_D190212_S3	3	487.27996826171875	2	487.278595	972.542637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.952	1	58.688	58.188	59.188	-0.26405								0	0	0	0.96291	1	22438	22438		1.8442	1.0506	1				15456	3736	9427	9478	14833	14833					0.0552670443378247
ITGRPAVL	8	Unmodified	_ITGRPAVL_					0	0	0		ENST00000522870.5_1_16:67199659-67200172:+|nuORF	ENST00000522870.5_1_16:67199659-67200172:+|nuORF	ENST00000522870.5_1_16:67199659-67200172:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	413.76116943359375	2	413.760895	825.507237	0.13845	5.7283E-05	-0.051432	-2.1281E-05	0.087014	3.6003E-05	413.7608652963692	44.418	0.28961	44.045	43.83	44.12	-0.37373					8	5	2	0	0	0	0.64404	1	16350	16350		28.487	3.813	1	4975700			15457	8568	9428	9479	14834	14834					0.08750409968274653
ITGVAALDSNV	11	Unmodified	_ITGVAALDSNV_					0	0	0		ENSG00000106688|ENST00000262352|SLC1A1;SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant;SLC1A1|p.K232Rfs*12|1|0.25|ENSG00000106688|chr9:4572313-4572313|A/-|frameshift_variant	ENSG00000106688|ENST00000262352|SLC1A1	ENSG00000106688|ENST00000262352|SLC1A1	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2877197265625	2	530.287671	1058.56079	0.34306	0.00018192	0.34926	0.00018521	0.69233	0.00036713	530.2879018017861	34.537	0.25936	34.24	34.077	34.336	-0.29707					8	4	2	0	0	0	0.52486	1	12721	12721		43.772	0	1	8088800			15458	2092	9429	9480	14835	14835					0.03385117889456524
ITHEGASFNA	10	Unmodified	_ITHEGASFNA_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	HCT116MG_D190212_S3	3	523.2697143554688	2	523.748713	1045.48287	0.19318	0.00010118	0.25451	0.0001333	0.44769	0.00023448	523.7490172757998	28.2	0.20898	27.994	27.863	28.072	-0.20593					5	3	2	0	0	0	0.29442	1	10152	10152		14.838	4.7643	1	4411000	+		15459	13952	9430	9481	14836	14836					-0.03804894975883144
ITIWHKITTI	10	Unmodified	_ITIWHKITTI_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;REV__nc|ENSG00000127603|Q9UPN3-4|MACF1	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	613.370849609375	2	613.368798	1224.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.098	1	57.927	57.427	58.427	-0.1703								0	0	0	0.90475	1	22444	22444		14.838	1.7958	1		+		15460	10417;11860	9431	9482	14837	14837					0.11967126362264935
ITIYLLLDIM	10	Unmodified	_ITIYLLLDIM_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.E1870Kfs*19|1|0.27|ENSG00000153207|chr1:246850426-246850426|T/-|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF;AHCTF1|p.G1113Wfs*13|1|0.07|ENSG00000153207|chr1:246867281-246867282|-/A|frameshift_variant	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MSMS	HCT116MG_D190212_S3	3	604.3547973632812	2	604.353968	1206.69338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.612	1	43.306	42.806	43.806	-0.30616								0	0	0	0.95507	1	16279	16279		3.5965	0	1				15461	4181	9432	9483	14838	14838					0.09830426301937223
ITKEELYRML	10	Unmodified	_ITKEELYRML_					0	0	0		ENSG00000165997|ENST00000377275|ARL5B	ENSG00000165997|ENST00000377275|ARL5B	ENSG00000165997|ENST00000377275|ARL5B	MSMS	HCT116MG_D190212_S2	2	648.3566284179688	2	648.355031	1294.69551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.081	1	16.732	16.232	17.232	-0.34933								0	0	0	0.91279	1	5791	5791		13.042	1.5478	1				15462	4814	9433	9484	14839	14839					0.0599485503971664
ITKFPVLIM	9	Unmodified	_ITKFPVLIM_					0	0	0			REV__ENSG00000008513|ENST00000522652|ST3GAL1	REV__ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MSMS	HCT116MG_D190212_S2	2	531.3251342773438	2	531.325014	1060.63547	0.59615	0.00031675	-0.12043	-6.3987E-05	0.47573	0.00025276	531.3248503971582	51.943	1.7505	51.759	51.013	52.763	-0.18369					96	33	5	0	0	0	0.66792	1	20198	20198		7.2892	7.2892	1	436730000	+		15463	10502	9434	9485	14840	14840					0.1075820916714747
ITKHGERIL	9	Unmodified	_ITKHGERIL_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MSMS	HCT116MG_D190212_S2	2	356.2177734375	3	356.217102	1065.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.966	1	52.776	52.276	53.276	-0.18922								0	0	0	0.76875	1	20359	20359		5.2969	1.3525	1				15464	2675	9435	9486	14841	14841					0.09928826979853511
ITKQPKPAT	9	Unmodified	_ITKQPKPAT_					0	0	0			REV__nc|ENSG00000184838|Q569H4-2|PRR16	REV__nc|ENSG00000184838|Q569H4-2|PRR16	MULTI-MSMS	HCT116MG_D190212_S2	2	492.29833984375	2	492.297842	982.581131	0.45149	0.00022227	0.31533	0.00015524	0.76682	0.0003775	492.29794419985325	40.791	0.25896	40.721	40.622	40.881	-0.069626					6	4	2	0	0	0	0.59184	1	15420	15420		11.64	3.047	1	19135000	+		15465	13813	9436	9487	14842	14842					0.08914333339930636
ITKRRRLKRRR	11	Unmodified	_ITKRRRLKRRR_					0	0	0			REV__NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant	REV__NHS|p.P977Hfs*71|1|0.12|ENSG00000188158|chrX:17727096-17727096|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	770.0172119140625	2	770.018758	1538.02296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.294	1	38.294	37.794	38.794	0								0	0	0	0.96157	1	14333	14333		0.26902	0.26902	1		+		15466	13946	9437	9488	14843	14843					0.2754727620701942
ITKTKVMP	8	Unmodified	_ITKTKVMP_					0	0	0			REV__POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant	REV__POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	459.27972412109375	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.487	1	39.41	38.91	39.91	-0.077835								0	0	0	0.8837	1	14863	14863		5.7604	0.52976	1		+		15467	10535	9438	9489	14844	14844					0.07996490064863337
ITKTRRKNKGV	11	Unmodified	_ITKTRRKNKGV_					0	0	0			REV__UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant	REV__UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	434.2763366699219	3	434.277244	1299.8099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.669	1	31.421	30.921	31.921	-0.24883								0	0	0	0.95636	1	11691	11691		1.2148	0	1		+		15468	12188	9439	9490	14845	14845					0.17198925636671447
ITKWSKKKKTV	11	Unmodified	_ITKWSKKKKTV_					0	0	0		ENST00000367097.7_1_6:158734674-158734719:+|nuORF	ENST00000367097.7_1_6:158734674-158734719:+|nuORF	ENST00000367097.7_1_6:158734674-158734719:+|nuORF	MSMS	HCT116MG_D190212_S1	1	449.62408447265625	3	449.622128	1345.84456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.431	1	55.431	54.931	55.931	0								0	0	0	0.95087	1	21285	21285		5.8681	1.462	1				15469	7378	9440	9491	14846	14846					0.18546748724770623
ITLGDFKSV	9	Unmodified	_ITLGDFKSV_					0	0	0		ENST00000576949.1_1_17:7133875-7137617:-|nuORF;ENST00000572285.5_1_17:7133284-7137536:-|nuORF;DVL2|p.A601Qfs*80|1|0.48|ENSG00000004975|chr17:7226275-7226275|C/-|frameshift_variant;ENSG00000004975|ENST00000005340|DVL2	ENST00000576949.1_1_17:7133875-7137617:-|nuORF	ENST00000576949.1_1_17:7133875-7137617:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	490.322509765625	2	490.276575	978.538597	0.015332	7.517E-06	0.13571	6.6534E-05	0.15104	7.4051E-05	490.27658160371055	41.849	0.22695	41.546	41.45	41.677	-0.30257					7	4	2	0	0	0	0.25874	1	15574	15574		3.9444	0	1	6314300			15470	740	9441	9492	14847	14847					0.04846938211721863
ITLLELDP	8	Unmodified	_ITLLELDP_					0	0	0			REV__LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant	REV__LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	457.2658996582031	2	457.265676	912.516799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.91	1	26.599	26.099	27.099	-0.3114								0	0	0	0.8837	1	9609	9609		14.582	1.0738	1		+		15471	12401	9442	9493	14848	14848					0.057041334631549034
ITLMPLVYI	9	Unmodified	_ITLMPLVYI_					0	0	0			REV__nc|ENSG00000133706|Q9P2J5-2|LARS1	REV__nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	531.81787109375	2	531.817021	1061.61949	0.69212	0.00036808	0.095473	5.0774E-05	0.7876	0.00041886	531.816828173139	47.497	1.6918	47.375	46.718	48.41	-0.12175					103	32	5	0	0	0	0.70732	1	17930	17930		4.756	0	1	115590000	+		15472	12035	9443	9494	14849	14849					0.09114502930265189
ITLTSRNVK	9	Unmodified	_ITLTSRNVK_					0	0	0		ENST00000521289.5_1_8:56986544-56986942:-|nuORF;ENSG00000008988|ENST00000009589|RPS20;nc|ENSG00000008988|P60866-2|RPS20	ENST00000521289.5_1_8:56986544-56986942:-|nuORF	ENST00000521289.5_1_8:56986544-56986942:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	516.3142700195312	2	516.314023	1030.61349	0.1009	5.2095E-05	0.30326	0.00015658	0.40416	0.00020867	516.3140653962757	53.341	1.0317	53.152	52.604	53.636	-0.18922					46	19	3	0	0	0	0.55223	1	20673	20673		13.906	3.8321	1	66077000			15473	865	9444	9495	14850	14850					0.09941120742928433
ITLTSRNVK	9	Unmodified	_ITLTSRNVK_					0	0	0		ENST00000521289.5_1_8:56986544-56986942:-|nuORF;ENSG00000008988|ENST00000009589|RPS20;nc|ENSG00000008988|P60866-2|RPS20	ENST00000521289.5_1_8:56986544-56986942:-|nuORF	ENST00000521289.5_1_8:56986544-56986942:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	516.314023	1030.61349	0.288	0.0001487	0.36073	0.00018625	0.64872	0.00033495	516.3140646158414	53.686	0.73016	53.387	53.091	53.821	-0.29946	0.062565	0.00011142	NaN	13.906	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5879400			15474	865	9444	9495							0.09941120742928433
ITLTSRNVK	9	Unmodified	_ITLTSRNVK_					0	0	0		ENST00000521289.5_1_8:56986544-56986942:-|nuORF;ENSG00000008988|ENST00000009589|RPS20;nc|ENSG00000008988|P60866-2|RPS20	ENST00000521289.5_1_8:56986544-56986942:-|nuORF	ENST00000521289.5_1_8:56986544-56986942:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	516.314023	1030.61349	0.32255	0.00016654	0.20825	0.00010752	0.53079	0.00027406	516.3140058582135	53.763	0.78095	53.434	53.041	53.822	-0.32923	0.10962	-4.6036E-05	NaN	13.906	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31306000			15475	865	9444	9495							0.09941120742928433
ITLWTWFL	8	Unmodified	_ITLWTWFL_					0	0	0			REV__ENSG00000188938|ENST00000375412|FAM120AOS	REV__ENSG00000188938|ENST00000375412|FAM120AOS	MSMS	HCT116MG_D190212_S2	2	539.9229736328125	2	540.299853	1078.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.648	1	52.461	51.961	52.961	-0.18725								0	0	0	0.8217	1	20229	20229		20.871	2.7362	1		+		15476	13982	9445	9496	14851	14851					0.04900422833657103
ITLWYHPP	8	Unmodified	_ITLWYHPP_					0	0	0		CDK13|p.R880H|1|0.25|ENSG00000065883|chr7:40062864-40062864|G/A|missense_variant	CDK13|p.R880H|1|0.25|ENSG00000065883|chr7:40062864-40062864|G/A|missense_variant	CDK13|p.R880H|1|0.25|ENSG00000065883|chr7:40062864-40062864|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	514.2762451171875	2	513.774003	1025.53345	0.24862	0.00012773	-0.12105	-6.219E-05	0.12758	6.5545E-05	513.7737009121964	42.321	0.78137	42.017	41.519	42.301	-0.30352					32	14	3	0	0	0	0.5791	1	15874	15874		34.187	2.0704	1	15630000			15477	391	9446	9497	14852	14852					0.021706791397491543
ITMAKVFLI	9	Unmodified	_ITMAKVFLI_					0	0	0		FPR3|p.F293Lfs*21|1|0.42|ENSG00000187474|chr19:51824622-51824622|T/-|frameshift_variant;ENSG00000187474|ENST00000339223|FPR3	FPR3|p.F293Lfs*21|1|0.42|ENSG00000187474|chr19:51824622-51824622|T/-|frameshift_variant	FPR3|p.F293Lfs*21|1|0.42|ENSG00000187474|chr19:51824622-51824622|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	518.317626953125	2	518.317189	1034.61982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.073	1	53.774	53.274	54.274	-0.29946								0	0	0	0.67173	1	20481	20481		20.454	0	1				15478	5937	9447	9498	14853	14853					0.10389922650119843
ITMQIVGDLS	10	Unmodified	_ITMQIVGDLS_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	HCT116MG_D190212_S4	4	1076.56640625	1	1076.56562	1075.55835	0.69736	0.00075075	-0.13988	-0.00015059	0.55748	0.00060016	1076.5654471589658	55.697	0.15622	55.385	55.298	55.454	-0.312					4	2	2	0	0	0	0.59961	1	20885	20885		39.95	13.066	1	3050900			15479	4739	9448	9499	14854	14854					0.023589461601886796
ITMWMKHGP	9	Unmodified	_ITMWMKHGP_					0	0	0		ENSG00000158258|ENST00000458420|CLSTN2;ENST00000511524.1_1_3:139654198-140275504:+|nuORF	ENSG00000158258|ENST00000458420|CLSTN2	ENSG00000158258|ENST00000458420|CLSTN2	MULTI-SECPEP	HCT116MG_D190212_S3	3	550.2171020507812	2	550.772622	1099.53069	0.62614	0.00034486	0.15478	8.5246E-05	0.78091	0.0004301	550.7728382205225	32.715	0.3645	32.43	32.248	32.612	-0.28511					14	6	3	0	0	0	0.2622	1	11967	11967		2.0598	2.0598	1	13031000			15480	4363	9449	9500	14855	14855					-0.015092355810338631
ITMWMKHGP	9	Unmodified	_ITMWMKHGP_					0	0	0		ENSG00000158258|ENST00000458420|CLSTN2;ENST00000511524.1_1_3:139654198-140275504:+|nuORF	ENSG00000158258|ENST00000458420|CLSTN2	ENSG00000158258|ENST00000458420|CLSTN2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	550.772622	1099.53069	0.61322	0.00033774	0.35851	0.00019745	0.97173	0.0005352	550.772830431732	32.803	0.36339	32.424	32.209	32.572	-0.37924	-0.0028785	0.00011029	NaN	2.0598	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4006900			15481	4363	9449	9500							-0.015092355810338631
ITNCLLELGT	10	Unmodified	_ITNCLLELGT_					0	0	0			REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1	REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	1076.56591796875	1	1076.56562	1075.55835	0.50963	0.00054865	0.27117	0.00029193	0.7808	0.00084058	1076.5661201318073	55.672	0.26684	55.385	55.304	55.571	-0.28773					8	4	3	0	0	0	0.36867	1	21143	21143		60.074	23.947	1	8512000	+		15482	18000	9450	9501	14856	14856					0.023589461601659423
ITNCLLELGT	10	Unmodified	_ITNCLLELGT_					0	0	0			REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1	REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1076.56562	1075.55835	0.50234	0.0005408	0.014667	1.579E-05	0.51701	0.00055659	1076.5654211809613	55.592	0.15546	55.406	55.327	55.483	-0.18565	0.014024	0.00011299	NaN	60.074	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63658000	+		15483	18000	9450	9501							0.023589461601659423
ITNCLLELGT	10	Unmodified	_ITNCLLELGT_					0	0	0			REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1	REV__tr|U7T6Q9|U7T6Q9_FUSNUArsenite-transportingATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00168PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1076.56562	1075.55835	0.50963	0.00054865	0.27117	0.00029193	0.7808	0.00084058	1076.5661201318073	55.672	0.26684	55.385	55.304	55.571	-0.28773	-0.0073121	0.00038913	NaN	60.074	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8512000	+		15484	18000	9450	9501							0.023589461601659423
ITNKTSLY	8	Unmodified	_ITNKTSLY_					0	0	0			REV__ENSG00000138413|ENST00000345146|IDH1	REV__ENSG00000138413|ENST00000345146|IDH1	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2608337402344	2	470.260925	938.507297	0.51221	0.00024087	-0.57798	-0.0002718	-0.065768	-3.0928E-05	470.2606294682702	29.512	0.30978	29.211	29.031	29.34	-0.30095					9	5	3	0	0	0	0.62424	1	10822	10822		30.225	10.968	1	21777000	+		15485	12223	9451	9502	14857	14857					0.0355836517762782
ITNKYQLVF	9	Unmodified	_ITNKYQLVF_					0	0	0		ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	ENST00000563573.5_1_16:22361166-22444153:-|nuORF	ENST00000563573.5_1_16:22361166-22444153:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	563.2633056640625	2	563.318774	1124.623	0.13056	7.355E-05	1.1807	0.00066509	1.3112	0.00073864	563.8210597366759	49.949	0.20495	49.786	49.686	49.891	-0.16369					5	3	2	0	0	0	0.088597	1	19142	19142		60.074	27.288	1	28650000			15486	1458	9452	9503	14858	14858					0.06566889028476908
ITNVLFERKKK	11	Unmodified	_ITNVLFERKKK_					0	0	0			REV__tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	REV__tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	688.4240112304688	2	688.424636	1374.83472	0.65071	0.00044797	-0.61736	-0.00042501	0.03335	2.2959E-05	688.4238837025586	61.079	1.2394	61.079	60.749	61.988	0					34	23	3	0	0	0	0.74191	1	23596	23596		1.1933	0	1	9995000	+		15487	17857	9453	9504	14859	14859					0.1622956071939825
ITNWFEKY	8	Unmodified	_ITNWFEKY_					0	0	0		tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	550.7733764648438	2	550.7742	1099.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.537	1	32.537	32.037	33.037	0								0	0	0	0.72655	1	12010	12010		28.487	0	1				15488	18414	9454	9505	14860	14860					-0.011939459310497114
ITNWFEKY	8	Unmodified	_ITNWFEKY_					0	0	0		tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	550.334716796875	2	550.7742	1099.53385	0.40118	0.00022096	-1.657	-0.00091262	-1.2558	-0.00069166	550.7732529440169	32.456	0.26063	32.456	32.274	32.534	0					8	4	2	0	0	0	0.31507	1	11960	11960		9.3474	0	1	5679200			15489	18414	9454	9505	14861	14861					-0.011939459310497114
ITNWFEKY	8	Unmodified	_ITNWFEKY_					0	0	0		tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	550.7742	1099.53385	0.35304	0.00019445	-1.7654	-0.00097233	-1.4123	-0.00077788	550.7732052174413	32.615	0.4166	32.404	32.221	32.638	-0.21135	-0.026183	-2.8424E-05	NaN	9.3474	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42399000			15490	18414	9454	9505							-0.011939459310497114
ITPCVKQCHSH	11	Unmodified	_ITPCVKQCHSH_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	MULTI-MSMS	HCT116MG_D190212_S4	4	627.3016357421875	2	626.7999	1251.58525	0.32105	0.00020123	-0.80413	-0.00050403	-0.48308	-0.0003028	626.7992916213148	28.215	0.57212	27.884	27.544	28.116	-0.33138					21	10	3	0	0	0	0.73536	1	10065	10065		8.7454	2.5396	1	3473200	+		15491	17212	9455	9506	14862	14862					-0.030482685002880316
ITPDEDGKFGF	11	Unmodified	_ITPDEDGKFGF_					0	0	0		PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3;nc|ENSG00000070159|P26045-3|PTPN3	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	614.325439453125	2	613.290411	1224.56627	0.85111	0.00052198	-0.32251	-0.00019779	0.52861	0.00032419	613.2901100981576	46.452	0.43938	46.08	45.941	46.38	-0.37134					33	11	4	0	0	0	0.72218	1	17233	17233		13.615	1.3742	1	68752000			15492	1232	9456	9507	14863	14863					-0.03703203318718806
ITPPTSTTTLP	11	Unmodified	_ITPPTSTTTLP_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	HCT116MG_D190212_S1	1	376.84814453125	3	376.876411	1127.6074	-0.14822	-5.5862E-05	1.3472	0.00050772	1.199	0.00045186	376.8767445862224	26.996	0.20783	26.996	26.865	27.073	0					5	3	2	0	0	0	0.72373	1	9731	9731		7.0371	1.2537	1	7657100			15493	9606	9457	9508	14864	14864					0.048705577207556416
ITPPTSTTTLP	11	Unmodified	_ITPPTSTTTLP_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	376.876411	1127.6074	-0.14822	-5.5862E-05	1.3472	0.00050772	1.199	0.00045186	376.8767445862224	26.996	0.20783	26.996	26.865	27.073	0	-0.1105	5.4675E-05	NaN	7.0371	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7657100			15494	9606	9457	9508							0.048705577207556416
ITPRRWLLLCN	11	Unmodified	_ITPRRWLLLCN_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	ENSG00000100994|ENST00000216962|PYGB;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	462.14666748046875	3	462.26758	1383.78091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.504	1	57.23	56.73	57.73	-0.27434								0	0	0	0.9598	1	21855	21855		0.40827	0.24894	1				15495	1748;1715	9458	9509	14865	14865					0.10437065016071756
ITQDLGLEL	9	Unmodified	_ITQDLGLEL_					0	0	0		PCDHA9|p.A49T|1|0.55|ENSG00000204961|chr5:140848640-140848640|G/A|missense_variant;PCDHA3|p.A49T|1|0.39|ENSG00000255408|chr5:140801342-140801342|G/A|missense_variant;PCDHA2|p.A49T|1|0.34|ENSG00000204969|chr5:140795109-140795109|G/A|missense_variant	PCDHA9|p.A49T|1|0.55|ENSG00000204961|chr5:140848640-140848640|G/A|missense_variant	PCDHA9|p.A49T|1|0.55|ENSG00000204961|chr5:140848640-140848640|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	502.28375244140625	2	501.279315	1000.54408	0.40805	0.00020455	0.36587	0.0001834	0.77392	0.00038795	501.2791699515583	54.241	0.41053	54.052	53.842	54.252	-0.1894					25	7	5	0	0	0	0.2853	1	20934	20934		32.305	5.4218	1	261020000			15496	9731	9459	9510	14866	14866					0.043826170035117684
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MSMS	HCT116MG_D190212_S1	1	510.7900085449219	2	510.78985	1019.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.097	1	32.097	31.597	32.597	0								0	0	0	0.007573	1	11832	11832		110.55	24.911	1				15497	6077	9460	9511	14867	14867					0.056146271030456774
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	HCT116MG_D190212_S2	2	510.7896728515625	2	510.78985	1019.56515	0.21453	0.00010958	-0.021298	-1.0879E-05	0.19324	9.8703E-05	510.7897765071997	32.354	0.31192	32.124	31.942	32.254	-0.23009					9	5	2	0	0	0	0.0068427	1	11971	11971		121.53	45.773	1	65503000			15498	6077	9460	9511	14868	14868					0.056146271030456774
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	510.78985	1019.56515	0.1326	6.7731E-05	-0.096172	-4.9124E-05	0.036428	1.8607E-05	510.7897326305947	32.403	0.20864	32.124	31.994	32.202	-0.27841	-0.00010581	-6.4194E-05	NaN	121.53	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2444100			15499	6077	9460	9511							0.056146271030456774
ITQKTRDY	8	Unmodified	_ITQKTRDY_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MSMS	HCT116MG_D190212_S4	4	512.7738647460938	2	512.774731	1023.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.979	1	37.596	37.096	38.096	-0.38283								0	0	0	0.8396	1	13904	13904		19.439	0.18201	1		+		15500	10381	9461	9512	14869	14869					0.024082684378413433
ITQLFKTCL	9	Unmodified	_ITQLFKTCL_					0	0	0			REV__ENST00000536683.5_1_11:94966793-94966961:+|nuORF	REV__ENST00000536683.5_1_11:94966793-94966961:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	534.255615234375	2	533.801903	1065.58925	0.22517	0.0001202	-0.59836	-0.0003194	-0.37318	-0.00019921	533.8013775813947	51.272	0.30884	51.272	51.091	51.4	0					8	5	2	0	0	0	0.25723	1	19607	19607		7.9102	0.62092	1	17084000	+		15501	16345	9462	9513	14870	14870					0.059081442650494864
ITRILERLRIP	11	Unmodified	_ITRILERLRIP_					0	0	0			REV__ENSG00000166747|ENST00000299980|AP1G1	REV__ENSG00000166747|ENST00000299980|AP1G1	MSMS	HCT116MG_D190212_S3	3	690.4451904296875	2	690.445903	1378.87725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.258	1	41.955	41.455	42.455	-0.30352								0	0	0	0.95686	1	15737	15737		2.7352	0	1		+		15502	13121	9463	9514	14871	14871					0.2029695584762976
ITRPNAGFMR	10	Unmodified	_ITRPNAGFMR_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;nc|ENSG00000084112|Q8WYL5-4|SSH1;SSH1|p.L973Tfs*23|1|0.28|ENSG00000084112|chr12:108788222-108788223|-/G|frameshift_variant;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	MSMS	HCT116MG_D190212_S4	4	581.8104858398438	2	581.811125	1161.6077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.313	1	49.954	49.454	50.454	-0.35878								0	0	0	0.94551	1	18689	18689		5.7319	0.97584	1				15503	1443	9464	9515	14872	14872					0.033356989596313724
ITRRRKKV	8	Unmodified	_ITRRRKKV_					0	0	0			REV__nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	REV__nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	MSMS	HCT116MG_D190212_S2	2	528.8610229492188	2	528.859267	1055.70398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.786	1	17.429	16.929	17.929	-0.35647								0	0	0	0.8837	1	6074	6074		13.906	0.29118	1		+		15504	13730	9465	9516	14873	14873					0.1783563458188837
ITRWRKRREI	10	Unmodified	_ITRWRKRREI_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6-3|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6-3|ANKMY1	MSMS	HCT116MG_D190212_S1	1	707.4324951171875	2	707.431119	1412.84768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.178	1	38.178	37.678	38.678	0								0	0	0	0.96263	1	14286	14286		1.6526	0.17072	1		+		15505	9937	9466	9517	14874	14874					0.15777436622192909
ITSLNQYID	9	Unmodified	_ITSLNQYID_					0	0	0		ENST00000471696.5_2_3:150321285-150340837:+|nuORF	ENST00000471696.5_2_3:150321285-150340837:+|nuORF	ENST00000471696.5_2_3:150321285-150340837:+|nuORF	MSMS	HCT116MG_D190212_S4	4	533.774658203125	2	533.774396	1065.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.214	1	36.83	36.33	37.33	-0.3839								0	0	0	0.74436	1	13648	13648		16.942	0	1				15506	8161	9467	9518	14875	14875					0.004094289981367183
ITSQYWERN	9	Unmodified	_ITSQYWERN_					0	0	0			REV__nc|ENSG00000113448|Q08499-5|PDE4D	REV__nc|ENSG00000113448|Q08499-5|PDE4D	MSMS	HCT116MG_D190212_S1	1	599.25927734375	2	598.78837	1195.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.082	1	28.082	27.582	28.582	0								0	0	0	0.76603	1	10217	10217		14.838	1.7958	1		+		15507	11483	9468	9519	14876	14876					-0.027772480217663542
ITTKTLPL	8	Unmodified	_ITTKTLPL_					0	0	0		ENST00000527401.5_1_11:45992606-45992897:-|nuORF;PHF21A|p.N200Tfs*67|2|0.23|ENSG00000135365|chr11:45971129-45971129|T/-|frameshift_variant;nc|ENSG00000135365|Q96BD5-2|PHF21A;PHF21A|p.S665Lfs*10|1|0.08|ENSG00000135365|chr11:45934018-45934019|-/G|frameshift_variant;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A	ENST00000527401.5_1_11:45992606-45992897:-|nuORF	ENST00000527401.5_1_11:45992606-45992897:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.7823791503906	2	443.784036	885.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.737	1	53.737	53.237	54.237	0								0	0	0	0.8837	1	20587	20587		7.2892	2.5332	1				15508	3344	9469	9520	14877	14877					0.10616430079721795
ITTRPGTKTP	10	Unmodified	_ITTRPGTKTP_					0	0	0		nc|ENSG00000157554|P11308-6|ERG;ENST00000468474.5_1_21:39772286-39947633:-|nuORF	nc|ENSG00000157554|P11308-6|ERG	nc|ENSG00000157554|P11308-6|ERG	MULTI-SECPEP	HCT116MG_D190212_S4	4	536.7578735351562	2	536.31148	1070.60841	0.48324	0.00025917	0.10244	5.494E-05	0.58568	0.00031411	536.3113635440384	53.396	0.72903	53.061	52.671	53.4	-0.33473					34	13	3	0	0	0	0.31042	1	19796	19796		0.30703	0.30703	1	7930600			15509	8128	9470	9521	14878	14878					0.07592816880332975
ITTVKTAWL	9	Unmodified	_ITTVKTAWL_					0	0	0		ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	MULTI-SECPEP	HCT116MG_D190212_S2	2	516.6444091796875	2	516.808042	1031.60153	0.30631	0.00015831	0.47998	0.00024806	0.78629	0.00040636	516.8080225213461	55.783	0.1562	55.598	55.483	55.639	-0.18565					4	2	2	0	0	0	0.22781	1	21493	21493		11.64	0	1	4896600			15510	4879	9471	9522	14879	14879					0.08699503999741864
ITVGLEAYCL	10	Unmodified	_ITVGLEAYCL_					0	0	0			REV__ENSG00000092068|ENST00000316902|SLC7A8	REV__ENSG00000092068|ENST00000316902|SLC7A8	MULTI-MSMS	HCT116MG_D190212_S2	2	541.2706909179688	2	541.283543	1080.55253	0.51557	0.00027907	-2.3838	-0.0012903	-1.8682	-0.0010112	541.7840796680506	52.791	0.25737	52.603	52.45	52.708	-0.18815					6	4	2	0	0	0	0.65652	1	20254	20254		24.021	2.4836	1	4444600	+		15511	11012	9472	9523	14880	14880					0.015478476484986459
ITWISARRMIP	11	Unmodified	_ITWISARRMIP_					0	0	0		ENST00000546882.5_1_12:106977081-107055965:+|nuORF;ENST00000549040.5_1_12:106977470-107075774:+|nuORF;ENST00000357881.8_1_12:106995076-107075774:+|nuORF;ENST00000392842.5_1_12:106976790-107075774:+|nuORF	ENST00000546882.5_1_12:106977081-107055965:+|nuORF	ENST00000546882.5_1_12:106977081-107055965:+|nuORF	MSMS	HCT116MG_D190212_S4	4	672.386962890625	2	672.384457	1342.75436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.358	1	39.98	39.48	40.48	-0.37828								0	0	0	0.95113	1	14803	14803		5.7319	2.4505	1				15512	7313	9473	9524	14881	14881					0.09669376124725204
ITWQKDGRP	9	Unmodified	_ITWQKDGRP_					0	0	0		DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM;DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	550.807373046875	2	550.795998	1099.57744	0.39932	0.00021994	-0.017794	-9.8011E-06	0.38152	0.00021014	550.7959384056447	28.141	0.46537	27.811	27.512	27.977	-0.32987					15	8	3	0	0	0	0.19461	1	10182	10182		41.84	9.0539	1	25631000			15513	731	9474	9525	14882	14882					0.03163663566078867
ITWQKDGRP	9	Unmodified	_ITWQKDGRP_					0	0	0		DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM;DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	550.7959594726562	2	550.795998	1099.57744	0.49813	0.00027437	0.0072458	3.9909E-06	0.50537	0.00027836	550.7958668195453	27.92	0.57176	27.732	27.257	27.829	-0.18847					23	10	3	0	0	0	0.12994	1	10043	10043		52.268	4.5197	1	9602800			15514	731	9474	9525	14883	14883					0.03163663566078867
ITWQKDGRP	9	Unmodified	_ITWQKDGRP_					0	0	0		DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM;DSCAM|p.P886Qfs*57|1|0.25|ENSG00000171587|chr21:40187253-40187253|G/-|frameshift_variant;nc|ENSG00000171587|O60469-2|DSCAM	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	550.795998	1099.57744	0.53023	0.00029205	-0.047779	-2.6316E-05	0.48246	0.00026573	550.7960281563253	28.144	0.41606	27.813	27.596	28.012	-0.33138	0.027477	-4.2238E-05	NaN	52.268	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3543900			15515	731	9474	9525							0.03163663566078867
ITYGNECHLC	10	Carbamidomethyl (C)	_ITYGNECHLC(Carbamidomethyl (C))_	ITYGNEC(0.134)HLC(0.866)		ITYGNEC(-8.1)HLC(8.1)		0	1	0		ENSG00000145879|ENST00000274565|SPINK7	ENSG00000145879|ENST00000274565|SPINK7	ENSG00000145879|ENST00000274565|SPINK7	MULTI-MSMS	HCT116MG_D190212_S1	1	605.7576293945312	2	605.254991	1208.49543	0.50669	0.00030668	1.0731	0.00064951	1.5798	0.00095619	605.7571746397517	30.373	0.25898	30.373	30.192	30.451	0					6	4	2	0	0	0	0.30623	1	11144	11144		49.933	8.0934	2	9848600			15516	3928	9475	9526	14884	14884	20				-0.10047942899518603
ITYGNECHLC	10	Carbamidomethyl (C)	_ITYGNECHLC(Carbamidomethyl (C))_	ITYGNEC(0.134)HLC(0.866)		ITYGNEC(-8.1)HLC(8.1)		0	1	0		ENSG00000145879|ENST00000274565|SPINK7	ENSG00000145879|ENST00000274565|SPINK7	ENSG00000145879|ENST00000274565|SPINK7	MULTI-MSMS	HCT116MG_D190212_S2	2	605.7570190429688	2	605.254991	1208.49543	0.43828	0.00026527	0.68486	0.00041451	1.1231	0.00067979	605.757141351743	30.521	0.35948	30.236	30.079	30.439	-0.28453					10	6	3	0	0	0	0.30623	1	11240	11240		49.933	15.531	2	38310000			15517	3928	9475	9526	14885	14885	20				-0.10047942899518603
ITYGNECHLC	10	Carbamidomethyl (C)	_ITYGNECHLC(Carbamidomethyl (C))_	ITYGNEC(0.134)HLC(0.866)		ITYGNEC(-8.1)HLC(8.1)		0	1	0		ENSG00000145879|ENST00000274565|SPINK7	ENSG00000145879|ENST00000274565|SPINK7	ENSG00000145879|ENST00000274565|SPINK7	MULTI-MSMS	HCT116MG_D190212_S3	3	605.256591796875	2	605.254991	1208.49543	0.46734	0.00028286	1.7248	0.001044	2.1922	0.0013268	605.2559901038879	30.714	0.28069	30.453	30.324	30.604	-0.26071					7	4	2	0	0	0	0.30623	1	11229	11229		49.933	15.531	2	9310800			15518	3928	9475	9526	14886	14886	20				-0.10047942899518603
ITYGNECHLC	10	Carbamidomethyl (C)	_ITYGNECHLC(Carbamidomethyl (C))_	ITYGNEC(0.134)HLC(0.866)		ITYGNEC(-8.1)HLC(8.1)		0	1	0		ENSG00000145879|ENST00000274565|SPINK7	ENSG00000145879|ENST00000274565|SPINK7	ENSG00000145879|ENST00000274565|SPINK7	MULTI-MSMS	HCT116MG_D190212_S4	4	605.256591796875	2	605.254991	1208.49543	1.054	0.00063795	0.14388	8.7083E-05	1.1979	0.00072503	605.255320635315	30.767	0.25804	30.403	30.307	30.565	-0.36416					9	5	2	0	0	0	0.30623	1	11136	11136		49.933	7.9774	2	4718300			15519	3928	9475	9526	14887	14887	20				-0.10047942899518603
IVAPGTFEV	9	Unmodified	_IVAPGTFEV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	HCT116MG_D190212_S1	1	932.5089721679688	1	932.50876	931.501483	0.8054	0.00075104	-0.78429	-0.00073136	0.021108	1.9683E-05	932.5078755160821	49.776	0.20637	49.776	49.647	49.853	0					5	3	2	0	0	0	0.043314	1	18987	18987		77.984	17.595	1	13658000			15520	3822	9476	9527	14888	14888					0.03299266665953837
IVAPGTFEV	9	Unmodified	_IVAPGTFEV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	HCT116MG_D190212_S2	2	932.508544921875	1	932.50876	931.501483	0.50123	0.0004674	0.39129	0.00036489	0.89252	0.00083229	932.5090438192101	49.978	0.25559	49.814	49.686	49.942	-0.16369					6	4	2	0	0	0	0.019399	1	19146	19146		97.075	36.685	1	44907000			15521	3822	9476	9527	14889	14889					0.03299266665953837
IVDHNIADY	9	Unmodified	_IVDHNIADY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	HCT116MG_D190212_S1	1	530.2590942382812	2	530.258914	1058.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.618	1	32.618	32.118	33.118	0								0	0	0	0.001572	1	12042	12042		126.57	86.609	1				15522	5321	9477	9528	14890	14890					-0.023637243161147126
IVDHNIADY	9	Unmodified	_IVDHNIADY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S2	2	530.258544921875	2	530.258914	1058.50327	0.54101	0.00028688	-0.098014	-5.1973E-05	0.443	0.0002349	530.2591003348591	32.771	0.51857	32.56	32.377	32.896	-0.21135					10	9	2	0	0	0	0.1535	1	12162	12162		47.594	26.723	1	36622000			15523	5321	9477	9528	14891	14891					-0.023637243161147126
IVDHNIADY	9	Unmodified	_IVDHNIADY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	530.258914	1058.50327	0.69114	0.00036648	0.026154	1.3868E-05	0.7173	0.00038035	530.2589393377438	33.284	0.51887	32.902	32.746	33.265	-0.38223	0.17086	2.4319E-06	NaN	47.594	46	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15772000			15524	5321	9477	9528							-0.023637243161147126
IVDRPVTL	8	Unmodified	_IVDRPVTL_					0	0	0		ENST00000565031.1_1_16:2009625-2011290:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	456.779296875	2	456.779285	911.544017	-0.0096119	-4.3905E-06	0.37904	0.00017314	0.36942	0.00016875	456.77940741584854	36.912	0.25926	36.912	36.783	37.042	0					6	4	2	0	0	0	0.31597	1	13808	13808		57.722	3.8892	1	6392000			15525	3698	9478	9529	14892	14892					0.08470661794183343
IVDRPVTL	8	Unmodified	_IVDRPVTL_					0	0	0		ENST00000565031.1_1_16:2009625-2011290:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	456.77935791015625	2	456.779285	911.544017	0.094208	4.3032E-05	0.0096552	4.4103E-06	0.10386	4.7442E-05	456.77920347527424	37.001	0.25764	36.886	36.757	37.014	-0.11478					10	4	3	0	0	0	0.12475	1	13869	13869		89.401	3.7592	1	44713000			15526	3698	9478	9529	14893	14893					0.08470661794183343
IVDRPVTL	8	Unmodified	_IVDRPVTL_					0	0	0		ENST00000565031.1_1_16:2009625-2011290:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	456.7795715332031	2	456.779285	911.544017	0.34881	0.00015933	-0.038668	-1.7663E-05	0.31014	0.00014166	456.7791507458421	37.2	0.31232	36.899	36.717	37.029	-0.30137					8	5	2	0	0	0	0.15501	1	13776	13776		82.529	3.8013	1	10155000			15527	3698	9478	9529	14894	14894					0.08470661794183343
IVEKRYPLE	9	Unmodified	_IVEKRYPLE_					0	0	0			REV__ENSG00000186952|ENST00000455884|TMEM232	REV__ENSG00000186952|ENST00000455884|TMEM232	MULTI-MSMS	HCT116MG_D190212_S2	2	573.8306274414062	2	573.829506	1145.64446	0.69202	0.0003971	1.2367	0.00070964	1.9287	0.0011067	573.8297371763343	47.842	0.31007	47.709	47.48	47.79	-0.13282					9	5	3	0	0	0	0.43775	1	18285	18285		20.454	0	1	25988000	+		15528	13907	9479	9530	14895	14895					0.07746274057149094
IVEVPIPD	8	Unmodified	_IVEVPIPD_					0	0	0			REV__ENST00000519879.1_1_8:118533115-118541135:+|nuORF	REV__ENST00000519879.1_1_8:118533115-118541135:+|nuORF	MSMS	HCT116MG_D190212_S2	2	441.2513732910156	2	441.252569	880.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.557	1	45.465	44.965	45.965	-0.092472								0	0	0	0.85589	1	17328	17328		18.135	0	1		+		15529	16226	9480	9531	14896	14896					0.04555864291648959
IVFLAFKKI	9	Unmodified	_IVFLAFKKI_					0	0	0		ENST00000465541.1_1_13:51524391-51530607:+|nuORF	ENST00000465541.1_1_13:51524391-51530607:+|nuORF	ENST00000465541.1_1_13:51524391-51530607:+|nuORF	MSMS	HCT116MG_D190212_S4	4	360.2378234863281	3	360.238956	1077.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.918	1	55.606	55.106	56.106	-0.312								0	0	0	0.76991	1	20951	20951		1.1933	0.735	1				15530	8090	9481	9532	14897	14897					0.15929848172845595
IVFLAFKKI	9	Unmodified	_IVFLAFKKI_					0	0	0		ENST00000465541.1_1_13:51524391-51530607:+|nuORF	ENST00000465541.1_1_13:51524391-51530607:+|nuORF	ENST00000465541.1_1_13:51524391-51530607:+|nuORF	MSMS	HCT116MG_D190212_S4	4	360.2378234863281	3	360.238956	1077.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.674	1	59.399	58.899	59.899	-0.27517								0	0	0	0.76991	1	22462	22462		1.1933	0	1				15531	8090	9481	9532	14898	14898					0.15929848172845595
IVGGYFLIRGV	11	Unmodified	_IVGGYFLIRGV_					0	0	0		ENSG00000128602|ENST00000249373|SMO;SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant;ENST00000495998.1_1_7:128846153-128848718:+|nuORF	ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	MULTI-MSMS	HCT116MG_D190212_S2	2	597.8574829101562	2	597.355691	1192.69683	0.52575	0.00031406	2.2208	0.0013266	2.7466	0.0016407	597.358517669858	53.306	0.87817	53.117	52.809	53.687	-0.18922					30	16	3	0	0	0	0.74084	1	20605	20605		6.7232	0.51738	1	13709000			15532	3002	9482	9533	14899	14899					0.10818857190770359
IVGPDGLVY	9	Unmodified	_IVGPDGLVY_					0	0	0		FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	932.5093383789062	1	932.50876	931.501483	0.68151	0.00063552	0.19569	0.00018248	0.8772	0.000818	932.5087711100854	49.265	0.5067	49.111	48.935	49.441	-0.15405					23	9	3	0	0	0	0.011506	1	18837	18837		109.63	54.856	1	237330000			15533	1989	9483	9534	14900	14900					0.032992666659424685
IVGPDGLVY	9	Unmodified	_IVGPDGLVY_					0	0	0		FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant;ENSG00000105202|ENST00000221801|FBL	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	FBL|p.K318Rfs*2|1|0.09|ENSG00000105202|chr19:39834553-39834553|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	932.5108642578125	1	932.50876	931.501483	0.71134	0.00066333	0.10994	0.00010252	0.82128	0.00076585	932.5087908116674	49.565	0.31399	49.249	49.027	49.341	-0.31596					8	5	2	0	0	0	0.0066639	1	18665	18665		123.1	58.86	1	7687800			15534	1989	9483	9534	14901	14901					0.032992666659424685
IVGSGNDIVVP	11	Unmodified	_IVGSGNDIVVP_					0	0	0			REV__ENSG00000115073|ENST00000289228|ACTR1B	REV__ENSG00000115073|ENST00000289228|ACTR1B	MULTI-MSMS	HCT116MG_D190212_S1	1	535.2984619140625	2	535.298039	1068.58152	0.23661	0.00012666	0.50798	0.00027192	0.74459	0.00039858	535.2981914256403	48.589	0.30871	48.589	48.408	48.717	0					8	5	2	0	0	0	0.60456	1	18532	18532		34.932	5.8505	1	8524800	+		15535	11525	9484	9535	14902	14902					0.04997708269161194
IVHLQHQVHQ	10	Unmodified	_IVHLQHQVHQ_					0	0	0			REV__ENST00000496302.1_1_10:95278654-95279576:+|nuORF	REV__ENST00000496302.1_1_10:95278654-95279576:+|nuORF	MSMS	HCT116MG_D190212_S3	3	413.5645446777344	3	413.563273	1237.66799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.366	1	15.451	14.951	15.951	0.084169								0	0	0	0.94339	1	5022	5022		3.3196	0	1		+		15536	12215	9485	9536	14903	14903					0.05866132614369235
IVIWKYKS	8	Unmodified	_IVIWKYKS_					0	0	0		LSR|p.Q253Rfs*5|1|0.42|ENSG00000105699|chr19:35261959-35261959|T/-|frameshift_variant;LSR|p.S424Qfs*10|1|0.5|ENSG00000105699|chr19:35266941-35266942|-/C|frameshift_variant;nc|ENSG00000105699|Q86X29-6|LSR;nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	LSR|p.Q253Rfs*5|1|0.42|ENSG00000105699|chr19:35261959-35261959|T/-|frameshift_variant	LSR|p.Q253Rfs*5|1|0.42|ENSG00000105699|chr19:35261959-35261959|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	518.8115844726562	2	518.813128	1035.6117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2668	1	2.2425	1.7425	2.7425	-0.024288								0	0	0	0.8837	1	740	740		0.79363	0.19213	1				15537	2027	9486	9537	14904	14904					0.09532111724979586
IVKFVQKRR	9	Unmodified	_IVKFVQKRR_					0	0	0			REV__ENST00000462186.2_1_19:23991626-23991716:+|nuORF	REV__ENST00000462186.2_1_19:23991626-23991716:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	587.3822631835938	2	587.382574	1172.7506	0.49621	0.00029146	-0.30692	-0.00018028	0.18929	0.00011119	587.3823689674508	58.59	0.3567	58.59	58.463	58.82	0					10	6	3	0	0	0	0.74917	1	22612	22612		1.8442	1.3859	1	19164000	+		15538	15794	9487	9538	14905	14905					0.1711307441316876
IVKGKIAL	8	Unmodified	_IVKGKIAL_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-MSMS	HCT116MG_D190212_S1	1	421.20648193359375	2	421.297114	840.579674	-0.10468	-4.4102E-05	-1.1294	-0.00047583	-1.2341	-0.00051993	421.2958457145503	58.458	0.3542	58.458	58.261	58.615	0					14	6	3	0	0	0	0.88026	1	22495	22495		0	0	1	19830000	+		15539	13423	9488	9539	14906	14906					0.1530074404181505
IVKHFNRRIM	10	Unmodified	_IVKHFNRRIM_					0	0	0			REV__KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant	REV__KLHL11|p.T529Rfs*15|1|0.06|ENSG00000178502|chr17:41854280-41854281|TG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	657.8875122070312	2	657.384791	1312.75503	0.65151	0.00042829	0.76071	0.00050008	1.4122	0.00092837	657.3852159973471	53.552	1.1969	53.218	52.567	53.764	-0.33473					37	22	2	0	0	0	0.88752	1	19969	19969		1.6526	1.6526	1	3867700	+		15540	13606	9489	9540	14907	14907					0.11116215564425147
IVKIHRRVL	9	Unmodified	_IVKIHRRVL_					0	0	0			REV__nc|ENSG00000123338|P55160-2|NCKAP1L	REV__nc|ENSG00000123338|P55160-2|NCKAP1L	MSMS	HCT116MG_D190212_S1	1	567.386474609375	2	567.385117	1132.75568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.069	1	42.069	41.569	42.569	0								0	0	0	0.76781	1	15857	15857		8.5933	3.3626	1		+		15541	11760	9490	9541	14908	14908					0.19461378275786956
IVKIISTEPLP	11	Unmodified	_IVKIISTEPLP_					0	0	0		nc|ENSG00000174720|Q4G0J3-3|LARP7;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-2|LARP7	nc|ENSG00000174720|Q4G0J3-3|LARP7	nc|ENSG00000174720|Q4G0J3-3|LARP7	MSMS	HCT116MG_D190212_S4	4	605.3743896484375	2	605.376289	1208.73803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.603	1	47.234	46.734	47.734	-0.36907								0	0	0	0.95581	1	17604	17604		3.2813	0.97858	1				15542	5343	9491	9542	14909	14909					0.14200573439597974
IVKILRLRAE	10	Unmodified	_IVKILRLRAE_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MSMS	HCT116MG_D190212_S2	2	605.7879638671875	2	605.90334	1209.79213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.52	1	36.401	35.901	36.901	-0.11883								0	0	0	0.95776	1	13659	13659		2.9952	0	1		+		15543	13728	9492	9543	14910	14910					0.19562210381855039
IVKKEEKGDYY	11	Unmodified	_IVKKEEKGDYY_					0	0	0		SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant;SPAG17|p.L1608Ifs*4|1|0.34|ENSG00000155761|chr1:117996698-117996699|-/T|frameshift_variant;SPAG17|p.T1729Lfs*21|2|0.43|ENSG00000155761|chr1:117992642-117992642|T/-|frameshift_variant;ENSG00000155761|ENST00000336338|SPAG17	SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	686.3616943359375	2	686.361367	1370.70818	0.53439	0.00036678	0.0042492	2.9165E-06	0.53864	0.0003697	686.3611882588239	42.267	0.20744	42.267	42.123	42.33	0					8	3	3	0	0	0	0.59037	1	15959	15959		36.506	10.238	1	14399000			15544	4262	9493	9544	14911	14911					0.037655897036529495
IVKKEEKGDYY	11	Unmodified	_IVKKEEKGDYY_					0	0	0		SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant;SPAG17|p.L1608Ifs*4|1|0.34|ENSG00000155761|chr1:117996698-117996699|-/T|frameshift_variant;SPAG17|p.T1729Lfs*21|2|0.43|ENSG00000155761|chr1:117992642-117992642|T/-|frameshift_variant;ENSG00000155761|ENST00000336338|SPAG17	SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	686.360595703125	2	686.361367	1370.70818	0.4194	0.00028786	0.085985	5.9017E-05	0.50538	0.00034688	686.3610900892431	42.288	0.25877	42.22	42.068	42.327	-0.068199					8	4	2	0	0	0	0.34323	1	16002	16002		60.074	17.761	1	41533000			15545	4262	9493	9544	14912	14912					0.037655897036529495
IVKKKKCS	8	Unmodified	_IVKKKKCS_					0	0	0			REV__ENST00000262238.8_1_14:100744431-100744488:+|nuORF	REV__ENST00000262238.8_1_14:100744431-100744488:+|nuORF	MSMS	HCT116MG_D190212_S4	4	467.30120849609375	2	467.29933	932.584108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.836	1	61.581	61.081	62.081	-0.25457								0	0	0	0.8837	1	23338	23338		0.69038	0	1		+		15546	14634	9494	9545	14913	14913					0.11511885193101534
IVKVECEPP	9	Unmodified	_IVKVECEPP_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MSMS	HCT116MG_D190212_S4	4	507.2703552246094	2	507.270435	1012.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.279	1	48.914	48.414	49.414	-0.365								0	0	0	0.7676	1	18273	18273		9.3474	0	1				15547	9606	9495	9546	14914	14914					0.020555784770067476
IVLDIRDLIPG	11	Unmodified	_IVLDIRDLIPG_					0	0	0			REV__tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1	REV__tr|U7SHB6|U7SHB6_FUSNUMgchelatase-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02331PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	612.763671875	2	612.371538	1222.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.084	1	36.699	36.199	37.199	-0.38486								0	0	0	0.95581	1	13596	13596		3.2813	1.6287	1		+		15548	17678	9496	9547	14915	14915					0.12606805154064205
IVLIIRVERRL	11	Unmodified	_IVLIIRVERRL_					0	0	0		ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	ENSG00000197428|ENST00000641817|OR51D1	MSMS	HCT116MG_D190212_S1	1	690.4443359375	2	690.464096	1378.91364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.762	1	58.762	58.262	59.262	0								0	0	0	0.96157	1	22645	22645		0.26902	0.26902	1				15549	6144	9497	9548	14916	14916					0.23933832744364736
IVLMVAWV	8	Unmodified	_IVLMVAWV_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12;ABCA12|p.I1081T|1|0.32|ENSG00000144452|chr2:214997747-214997747|A/G|missense_variant;ABCA12|p.N1173Kfs*27|1|0.28|ENSG00000144452|chr2:214990807-214990808|-/T|frameshift_variant;ABCA12|p.T1534Nfs*8|1|0.1|ENSG00000144452|chr2:214980622-214980623|-/T|frameshift_variant;ABCA12|p.N1671Kfs*2|1|0.24|ENSG00000144452|chr2:214978431-214978432|-/T|frameshift_variant;ABCA12|p.Y2042Lfs*23|1|0.04|ENSG00000144452|chr2:214956772-214956773|-/G|frameshift_variant;ABCA12|p.F2109Lfs*25|2|0.16|ENSG00000144452|chr2:214955268-214955268|A/-|frameshift_variant	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-MSMS	HCT116MG_D190212_S3	3	465.7773742675781	2	465.777699	929.540846	0.50768	0.00023647	-0.63457	-0.00029557	-0.12689	-5.9101E-05	465.7772494574379	44.439	0.7758	44.132	43.551	44.327	-0.30759					23	15	2	0	0	0	0.86388	1	16502	16502		2.8892	2.8892	1	9180500			15550	3864	9498	9549	14917	14917					0.07325695415818245
IVLQWCFSWIS	11	Unmodified	_IVLQWCFSWIS_					0	0	0			REV__ENSG00000150275|ENST00000644397|PCDH15	REV__ENSG00000150275|ENST00000644397|PCDH15	MSMS	HCT116MG_D190212_S2	2	691.3495483398438	2	691.352291	1380.69003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.873	1	51.69	51.19	52.19	-0.18369								0	0	0	0.95023	1	19914	19914		6.2058	1.3088	1		+		15551	12580	9499	9550	14918	14918					0.014911762479187018
IVLVVLHIW	9	Unmodified	_IVLVVLHIW_					0	0	0		CWH43|p.R137H|1|0.38|ENSG00000109182|chr4:48991989-48991989|G/A|missense_variant	CWH43|p.R137H|1|0.38|ENSG00000109182|chr4:48991989-48991989|G/A|missense_variant	CWH43|p.R137H|1|0.38|ENSG00000109182|chr4:48991989-48991989|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	546.354736328125	2	546.35242	1090.69029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.332	1	61.094	60.594	61.594	-0.2387								0	0	0	0.77008	1	23406	23406		0.6015	0.076735	1				15552	621	9500	9551	14919	14919					0.14856964030082054
IVNEQKESKL	10	Unmodified	_IVNEQKESKL_					0	0	0			REV__CEP290|p.N212Tfs*14|4|0.21|ENSG00000198707|chr12:88130302-88130302|T/-|frameshift_variant	REV__CEP290|p.N212Tfs*14|4|0.21|ENSG00000198707|chr12:88130302-88130302|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	594.3333740234375	2	594.335153	1186.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.992	1	29.992	29.492	30.492	0								0	0	0	0.8981	1	10983	10983		16.149	2.5342	1		+		15553	10162	9501	9552	14920	14920					0.06989051360665144
IVNLWWPSNSH	11	Unmodified	_IVNLWWPSNSH_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	HCT116MG_D190212_S1	1	676.841552734375	2	676.840936	1351.66732	0.75358	0.00051005	0.66397	0.0004494	1.4175	0.00095945	676.841294190582	56.145	0.20631	56.145	56.015	56.222	0					7	3	3	0	0	0	0.73696	1	21594	21594		8.1555	0	1	19357000	+		15554	12486	9502	9553	14921	14921					0.005552931746706236
IVNNFVFLL	9	Unmodified	_IVNNFVFLL_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	HCT116MG_D190212_S2	2	539.81640625	2	539.81841	1077.62227	0.46943	0.0002534	-3.2523	-0.0017556	-2.7829	-0.0015022	539.8161588354411	54.979	0.4582	54.791	54.662	55.121	-0.18797					11	8	2	0	0	0	0.49914	1	21211	21211		16.942	0	1	48091000			15555	5316	9503	9554	14922	14922					0.0865609437942112
IVNRGLFF	8	Unmodified	_IVNRGLFF_					0	0	0			REV__ENST00000532414.2_1_1:156043673-156043931:-|nuORF	REV__ENST00000532414.2_1_1:156043673-156043931:-|nuORF	MSMS	HCT116MG_D190212_S4	4	483.2805480957031	2	483.281995	964.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.676	1	40.298	39.798	40.798	-0.37828								0	0	0	0.8837	1	14932	14932		9.3474	0.75416	1		+		15556	16322	9504	9555	14923	14923					0.06574385376666214
IVNRRSSV	8	Unmodified	_IVNRRSSV_					0	0	0			REV__POTEM|p.H350R|1|0.09|ENSG00000222036|chr14:18977597-18977597|A/G|missense_variant	REV__POTEM|p.H350R|1|0.09|ENSG00000222036|chr14:18977597-18977597|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	465.7776184082031	2	465.777608	929.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.75	1	42.375	41.875	42.875	-0.37493								0	0	0	0.8837	1	15724	15724		5.7604	0	1		+		15557	17436	9505	9556	14924	14924					0.07307411740180214
IVPIEFTKY	9	Unmodified	_IVPIEFTKY_					0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	MSMS	HCT116MG_D190212_S2	2	555.7695922851562	2	555.3157	1108.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.045	1	30.778	30.278	31.278	-0.26704								0	0	0	0.76575	1	11437	11437		15.847	1.0089	1		+		15558	11318	9506	9557	14925	14925					0.06688370796950949
IVQVAQQLIL	10	Unmodified	_IVQVAQQLIL_					0	0	0			REV__nc|ENSG00000071564|P15923-2|TCF3	REV__nc|ENSG00000071564|P15923-2|TCF3	MSMS	HCT116MG_D190212_S2	2	375.5733642578125	3	375.572775	1123.69649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.035	1	46.913	46.413	47.413	-0.12175								0	0	0	0.69311	1	17932	17932		26.021	8.1575	1		+		15559	17077	9507	9558	14926	14926					0.13959437470953162
IVRAVMYRHLL	11	Unmodified	_IVRAVMYRHLL_					0	0	0			REV__SLC29A4|p.V348M|1|0.38|ENSG00000164638|chr7:5299260-5299260|G/A|missense_variant	REV__SLC29A4|p.V348M|1|0.38|ENSG00000164638|chr7:5299260-5299260|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	457.6077575683594	3	457.607825	1369.80165	0.38082	0.00017427	0.56763	0.00025975	0.94846	0.00043402	457.6079416560196	53.706	1.2008	53.407	52.829	54.03	-0.29946					39	22	2	0	0	0	0.74191	1	20308	20308		1.4551	0	1	2679000	+		15560	17524	9508	9559	14927	14927					0.13153655395740316
IVRRVMVATY	10	Unmodified	_IVRRVMVATY_					0	0	0			REV__POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant	REV__POLR3B|p.V869Sfs*8|1|0.27|ENSG00000013503|chr12:106463506-106463507|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	604.3541870117188	2	604.352625	1206.6907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.255	1	45.163	44.663	45.663	-0.092472								0	0	0	0.95351	1	17205	17205		3.9444	0.3479	1		+		15561	10535	9509	9560	14928	14928					0.09562015687629355
IVSFIITLILW	11	Unmodified	_IVSFIITLILW_					0	0	0			REV__tr|U7T6S1|U7T6S1_FUSNUNfeD-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00178PE=4SV=1	REV__tr|U7T6S1|U7T6S1_FUSNUNfeD-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00178PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	659.4130249023438	2	659.412675	1316.8108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.64	1	57.465	56.965	57.965	-0.17494								0	0	0	0.94238	1	22260	22260		18.146	8.0724	1		+		15562	18001	9510	9561	14929	14929					0.16506327233059892
IVSPVRPTRR	10	Unmodified	_IVSPVRPTRR_					0	0	0			REV__ENST00000577255.1_1_18:24035709-24035892:-|nuORF	REV__ENST00000577255.1_1_18:24035709-24035892:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	590.86669921875	2	590.867289	1179.72002	0.73172	0.00043235	-0.47483	-0.00028056	0.25689	0.00015179	590.8668112721682	54.409	0.3553	54.409	54.231	54.587	0					14	6	4	0	0	0	0.87343	1	20857	20857		5.2969	0	1	460340000	+		15563	12059	9511	9562	14930	14930					0.13735296028130506
IVSSPRWAP	9	Unmodified	_IVSSPRWAP_					0	0	0			REV__ENST00000372515.8_1_6:43403555-43403977:+|nuORF	REV__ENST00000372515.8_1_6:43403555-43403977:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	506.7830505371094	2	506.782359	1011.55016	0.4421	0.00022405	0.45815	0.00023218	0.90025	0.00045623	506.78264202154907	45.581	0.31404	45.581	45.399	45.713	0					7	5	2	0	0	0	0.2853	1	17305	17305		32.305	2.4649	1	7241800	+		15564	9825	9512	9563	14931	14931					0.04485180025699265
IVSTMEHY	8	Unmodified	_IVSTMEHY_					0	0	0		ENST00000466828.5_1_10:105642444-105658073:-|nuORF;ENSG00000107960|ENST00000224950|STN1	ENST00000466828.5_1_10:105642444-105658073:-|nuORF	ENST00000466828.5_1_10:105642444-105658073:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	490.2310485839844	2	490.23131	978.448068	-0.039536	-1.9382E-05	0.3049	0.00014947	0.26537	0.00013009	490.2313090342048	30.029	0.30969	29.744	29.564	29.873	-0.28453					8	5	2	0	0	0	0.25164	1	11032	11032		63.563	25.412	1	40235000			15565	2139	9513	9564	14932	14932					-0.04201854108225689
IVSTSKGVITD	11	Unmodified	_IVSTSKGVITD_					0	0	0		tr|U7T3C7|U7T3C7_FUSNUSmallribosomalsubunitproteinuS8OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsHPE=3SV=1	tr|U7T3C7|U7T3C7_FUSNUSmallribosomalsubunitproteinuS8OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsHPE=3SV=1	tr|U7T3C7|U7T3C7_FUSNUSmallribosomalsubunitproteinuS8OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsHPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	560.3174438476562	2	560.316428	1118.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.898	1	35.77	35.27	36.27	-0.12799								0	0	0	0.86874	1	13407	13407		24.021	4.7636	1				15566	18592	9514	9565	14933	14933					0.06373960095038456
IVTSYIHIVP	10	Unmodified	_IVTSYIHIVP_					0	0	0		ENSG00000171505|ENST00000304880|OR1N1	ENSG00000171505|ENST00000304880|OR1N1	ENSG00000171505|ENST00000304880|OR1N1	MSMS	HCT116MG_D190212_S4	4	571.0928344726562	2	571.334424	1140.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.438	1	46.067	45.567	46.567	-0.37134								0	0	0	0.84381	1	17145	17145		23.148	1.4018	1				15567	5202	9515	9566	14934	14934					0.08959462062557577
IVVFMKVVT	9	Unmodified	_IVVFMKVVT_					0	0	0			REV__ENSG00000047346|ENST00000619572|ATOSA	REV__ENSG00000047346|ENST00000619572|ATOSA	MULTI-SECPEP	HCT116MG_D190212_S1	1	518.3536376953125	2	518.317189	1034.61982	0.3195	0.0001656	0.018536	9.6078E-06	0.33804	0.00017521	518.3171453261679	47.698	1.1925	47.698	47.062	48.254	0					46	23	3	0	0	0	0.2622	1	18326	18326		0.52476	0	1	109130000	+		15568	10600	9516	9567	14935	14935					0.10389922650119843
IVVLLALLPDP	11	Unmodified	_IVVLLALLPDP_					0	0	0			REV__nc|ENSG00000284713|A0A286YFK9|SMIM38	REV__nc|ENSG00000284713|A0A286YFK9|SMIM38	MSMS	HCT116MG_D190212_S4	4	388.2539978027344	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.352	1	41.976	41.476	42.476	-0.37565								0	0	0	0.96121	1	15562	15562		0.45452	0.1855	1		+		15569	17323	9517	9568	14936	14936					0.16289778790564924
IVVRKNPFRFA	11	Unmodified	_IVVRKNPFRFA_					0	0	0		ENSG00000106688|ENST00000262352|SLC1A1;SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant	ENSG00000106688|ENST00000262352|SLC1A1	ENSG00000106688|ENST00000262352|SLC1A1	MSMS	HCT116MG_D190212_S3	3	449.6063232421875	3	449.606701	1345.79827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.685	1	48.369	47.869	48.869	-0.31596								0	0	0	0.96111	1	18318	18318		0.50596	0.051438	1				15570	2092	9518	9569	14937	14937					0.13920728613356914
IVYLYTKKV	9	Unmodified	_IVYLYTKKV_					0	0	0		ENSG00000109475|ENST00000394667|RPL34;ENST00000503574.1_1_4:109543115-109543474:+|nuORF	ENSG00000109475|ENST00000394667|RPL34	ENSG00000109475|ENST00000394667|RPL34	MSMS	HCT116MG_D190212_S4	4	376.23297119140625	3	376.23387	1125.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.955	1	53.625	53.125	54.125	-0.32923								0	0	0	0.76991	1	20160	20160		1.1933	0.41681	1				15571	2209	9519	9570	14938	14938					0.12196936584973628
IVYLYTKKV	9	Unmodified	_IVYLYTKKV_					0	0	0		ENSG00000109475|ENST00000394667|RPL34;ENST00000503574.1_1_4:109543115-109543474:+|nuORF	ENSG00000109475|ENST00000394667|RPL34	ENSG00000109475|ENST00000394667|RPL34	MSMS	HCT116MG_D190212_S4	4	376.23260498046875	3	376.23387	1125.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.656	1	54.332	53.832	54.832	-0.32349								0	0	0	0.7694	1	20442	20442		2.9952	1.8019	1				15572	2209	9519	9570	14939	14939					0.12196936584973628
IWDRLYFG	8	Unmodified	_IWDRLYFG_					0	0	0			REV__nc|ENSG00000172508|A5YM72-2|CARNS1	REV__nc|ENSG00000172508|A5YM72-2|CARNS1	MULTI-MSMS	HCT116MG_D190212_S2	2	535.2769165039062	2	535.276909	1068.53927	0.48082	0.00025737	-0.11815	-6.3241E-05	0.36267	0.00019413	535.2764930933081	55.415	0.25682	55.23	55.123	55.38	-0.18565					9	4	3	0	0	0	0.69862	1	21401	21401		23.148	2.6948	1	18318000	+		15573	13391	9520	9571	14940	14940					0.007737776514204597
IWHWEVKGRIL	11	Unmodified	_IWHWEVKGRIL_					0	0	0		ENST00000542698.1_1_12:120117647-120118127:+|nuORF	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	718.9131469726562	2	718.911696	1435.80884	0.88207	0.00063413	0.45981	0.00033056	1.3419	0.00096469	718.9121465775414	53.385	0.8745	53.385	52.69	53.565	0					20	16	2	0	0	0	0.74191	1	20355	20355		2.9952	1.6657	1	26434000			15574	8700	9521	9572	14941	14941					0.1083671126777972
IWHWEVKGRIL	11	Unmodified	_IWHWEVKGRIL_					0	0	0		ENST00000542698.1_1_12:120117647-120118127:+|nuORF	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	ENST00000542698.1_1_12:120117647-120118127:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	718.911696	1435.80884	0.88207	0.00063413	0.45981	0.00033056	1.3419	0.00096469	718.9121465775414	53.385	0.8745	53.385	52.69	53.565	0	0	0	NaN	2.9952	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26434000			15575	8700	9521	9572							0.1083671126777972
IWKKVLII	8	Unmodified	_IWKKVLII_					0	0	0			REV__USH2A|p.R205I|1|0.33|ENSG00000042781|chr1:216418551-216418551|C/A|missense_variant	REV__USH2A|p.R205I|1|0.33|ENSG00000042781|chr1:216418551-216418551|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	506.8511047363281	2	506.849513	1011.68447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.483	1	11.483	10.983	11.983	0								0	0	0	0.8837	1	3618	3618		0	0	1		+		15576	18044	9522	9573	14942	14942					0.17909865518436163
IWRNWKRKNTK	11	Unmodified	_IWRNWKRKNTK_					0	0	0		nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	MSMS	HCT116MG_D190212_S3	3	510.801025390625	3	510.631909	1528.8739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.664	1	14.744	14.244	15.244	0.079683								0	0	0	0.95954	1	4739	4739		1.3296	0.92138	1				15577	4320	9523	9574	14943	14943					0.13061705793620604
IWVVSIIM	8	Unmodified	_IWVVSIIM_					0	0	0		nc|ENSG00000134249|Q9UKF2-2|ADAM30;ENSG00000134249|ENST00000369400|ADAM30	nc|ENSG00000134249|Q9UKF2-2|ADAM30	nc|ENSG00000134249|Q9UKF2-2|ADAM30	MSMS	HCT116MG_D190212_S3	3	480.78106689453125	2	480.782982	959.55141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.346	1	45.035	44.535	45.535	-0.31094								0	0	0	0.26045	1	16975	16975		59.795	0	1				15578	3270	9524	9575	14944	14944					0.07001678070264461
IYAHRVILSAC	11	Unmodified	_IYAHRVILSAC_					0	0	0		ENST00000493170.1_1_1:173684720-173703518:+|nuORF;ENSG00000076321|ENST00000209884|KLHL20	ENST00000493170.1_1_1:173684720-173703518:+|nuORF	ENST00000493170.1_1_1:173684720-173703518:+|nuORF	MSMS	HCT116MG_D190212_S2	2	623.6615600585938	2	623.342258	1244.66996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.857	1	49.693	49.193	50.193	-0.16369								0	0	0	0.93717	1	19094	19094		13.042	2.2185	1				15579	1333	9525	9576	14945	14945					0.057414253079741684
IYGQEAKV	8	Unmodified	_IYGQEAKV_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2;CDHR2|p.G788Vfs*4|1|0.31|ENSG00000074276|chr5:176584639-176584639|G/-|frameshift_variant;CDHR2|p.R383Afs*51|1|0.42|ENSG00000074276|chr5:176576133-176576133|C/-|frameshift_variant	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	HCT116MG_D190212_S2	2	453.5860595703125	2	454.247818	906.481082	0.36151	0.00016422	0.17803	8.0868E-05	0.53954	0.00024508	454.2479583839523	27.301	0.20778	26.949	26.818	27.026	-0.35254					6	3	2	0	0	0	0.2241	1	9879	9879		32.305	8.2849	1	7685800			15580	388	9526	9577	14946	14946					0.024100960061332444
IYINKCRIRQI	11	Unmodified	_IYINKCRIRQI_					0	0	0			REV__ENST00000359358.8_1_18:30253057-30253159:-|nuORF	REV__ENST00000359358.8_1_18:30253057-30253159:-|nuORF	MSMS	HCT116MG_D190212_S2	2	710.6564331054688	2	710.416288	1418.81802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.655	1	46.544	46.044	47.044	-0.11121								0	0	0	0.95581	1	17777	17777		3.2813	0	1		+		15581	15074	9527	9578	14947	14947					0.12536736561810358
IYIPVLPPH	9	Unmodified	_IYIPVLPPH_					0	0	0		ENSG00000213047|ENST00000620048|DENND1B;nc|ENSG00000213047|Q6P3S1-3|DENND1B;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	MSMS	HCT116MG_D190212_S4	4	350.2171325683594	3	350.211177	1047.6117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.029	1	38.648	38.148	39.148	-0.38055								0	0	0	0.76991	1	14326	14326		1.1933	0	1				15582	6405	9528	9579	14948	14948					0.08980111724986273
IYKDRLRINRF	11	Unmodified	_IYKDRLRINRF_					0	0	0		nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-4|EPB41L2	nc|ENSG00000079819|O43491-4|EPB41L2	MSMS	HCT116MG_D190212_S1	1	747.4368896484375	2	747.438609	1492.86267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.829	1	57.829	57.329	58.329	0								0	0	0	0.95925	1	22261	22261		1.4819	0.15237	1				15583	1387	9529	9580	14949	14949					0.13594883699488491
IYKELRKLEVE	11	Unmodified	_IYKELRKLEVE_					0	0	0		ENSG00000084463|ENST00000261167|WBP11	ENSG00000084463|ENST00000261167|WBP11	ENSG00000084463|ENST00000261167|WBP11	MSMS	HCT116MG_D190212_S2	2	710.4171142578125	2	710.413934	1418.81332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.455	1	46.343	45.843	46.843	-0.11121								0	0	0	0.95581	1	17695	17695		3.2813	0	1				15584	1445	9530	9581	14950	14950					0.12066130900075223
IYKFKRKIPWI	11	Unmodified	_IYKFKRKIPWI_					0	0	0		ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	MULTI-MSMS	HCT116MG_D190212_S1	1	498.31097412109375	3	497.978135	1490.91258	0.42273	0.00021051	-1.7192	-0.00085614	-1.2965	-0.00064562	498.31096129617674	55.515	0.56419	55.515	55.298	55.862	0					14	10	2	0	0	0	0.74191	1	21239	21239		0.45452	0.29519	1	8145000			15585	4284	9531	9582	14951	14951					0.18675618375459635
IYKFKRKIPWI	11	Unmodified	_IYKFKRKIPWI_					0	0	0		ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	497.978135	1490.91258	0.43427	0.00021626	-0.31613	-0.00015743	0.11814	5.8831E-05	497.9782122705385	55.774	0.51643	55.589	55.327	55.844	-0.18565	0.036743	0.00026994	NaN	0.45452	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28283000			15586	4284	9531	9582							0.18675618375459635
IYLIKLFKVIK	11	Unmodified	_IYLIKLFKVIK_					0	0	0			REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1	REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	459.978515625	3	459.979253	1376.91593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.631	1	11.631	11.131	12.131	0								0	0	0	0.96208	1	3678	3678		0	0	1		+		15587	17833	9532	9583	14952	14952					0.24254868429443377
IYLKHGSK	8	Unmodified	_IYLKHGSK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	HCT116MG_D190212_S2	2	473.27978515625	2	473.279452	944.544351	0.58622	0.00027745	0.19429	9.1953E-05	0.78051	0.0003694	473.27943547641473	47.747	0.36122	47.615	47.48	47.841	-0.13281					14	6	3	0	0	0	0.36164	1	18243	18243		53.576	9.1686	1	85759000	+		15588	13457	9533	9584	14953	14953					0.06986081514037323
IYLKHGSK	8	Unmodified	_IYLKHGSK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-SECPEP	HCT116MG_D190212_S2	2	473.7932434082031	2	473.279452	944.544351	0.58622	0.00027745	0.19429	9.1953E-05	0.78051	0.0003694	473.27943547641473	47.747	0.36122	47.615	47.48	47.841	-0.13281					14	6	3	0	0	0	0.21611	1	18275	18275		42.095	13.608	1	85759000	+		15589	13457	9533	9584	14954	14954					0.06986081514037323
IYLKHGSK	8	Unmodified	_IYLKHGSK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2793884277344	2	473.279452	944.544351	0.16316	7.7219E-05	0.17953	8.4966E-05	0.34268	0.00016218	473.279462789434	48.117	0.36517	47.801	47.619	47.984	-0.31596					16	6	3	0	0	0	0.36164	1	18091	18091		53.576	9.1686	1	34028000	+		15590	13457	9533	9584	14955	14955					0.06986081514037323
IYLKHGSK	8	Unmodified	_IYLKHGSK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2795715332031	2	473.279452	944.544351	0.30304	0.00014342	0.54353	0.00025724	0.84658	0.00040067	473.2795441851978	48.173	0.25916	47.806	47.676	47.935	-0.36728					7	4	2	0	0	0	0.46267	1	17836	17836		44.407	3.9584	1	7168200	+		15591	13457	9533	9584	14956	14956					0.06986081514037323
IYLKHGSK	8	Unmodified	_IYLKHGSK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	473.279452	944.544351	0.10774	5.099E-05	-0.14778	-6.9943E-05	-0.040046	-1.8953E-05	473.2792256278997	47.815	0.29853	47.815	47.646	47.944	0	0.05568	-0.00029816	NaN	53.576	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17388000	+		15592	13457	9533	9584							0.06986081514037323
IYLKHGSK	8	Unmodified	_IYLKHGSK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	473.279452	944.544351	0.16316	7.7219E-05	0.17953	8.4966E-05	0.34268	0.00016218	473.279462789434	48.117	0.36517	47.801	47.619	47.984	-0.31596	0.042154	1.1655E-05	NaN	53.576	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34028000	+		15593	13457	9533	9584							0.06986081514037323
IYLKHGSK	8	Unmodified	_IYLKHGSK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	473.279452	944.544351	0.30304	0.00014342	0.54353	0.00025724	0.84658	0.00040067	473.2795441851978	48.173	0.25916	47.806	47.676	47.935	-0.36728	0.046572	0.00035621	NaN	53.576	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7168200	+		15594	13457	9533	9584							0.06986081514037323
IYNEIAGK	8	Unmodified	_IYNEIAGK_					0	0	0		ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant;ARFGEF1|p.F1680Lfs*8|1|0.29|ENSG00000066777|chr8:67203171-67203171|A/-|frameshift_variant;ENSG00000066777|ENST00000262215|ARFGEF1	ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant	ARFGEF1|p.K888Rfs*10|1|0.36|ENSG00000066777|chr8:67253485-67253486|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	454.2470397949219	2	454.247818	906.481082	0.057305	2.6031E-05	0.14551	6.6097E-05	0.20281	9.2127E-05	454.24777534504096	26.892	0.46859	26.892	26.709	27.178	0					19	8	3	0	0	0	0.19352	2	9717	9717;9770		74.929	5.1032	1	76835000			15595	167	9534	9585	14957;14958	14957					0.02410096006144613
IYPVTRLGKY	10	Unmodified	_IYPVTRLGKY_					0	0	0		ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	ENSG00000186795|ENST00000334549|KCNK18	MSMS	HCT116MG_D190212_S1	1	605.3553466796875	2	605.353148	1208.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.141	1	23.141	22.641	23.641	0								0	0	0	0.94107	1	8227	8227		6.7232	0.53132	1				15596	5908	9535	9586	14959	14959					0.09574553328184265
IYQAKEKLKS	10	Unmodified	_IYQAKEKLKS_					0	0	0		MED4|p.V125I|1|0.29|ENSG00000136146|chr13:48083419-48083419|C/T|missense_variant	MED4|p.V125I|1|0.29|ENSG00000136146|chr13:48083419-48083419|C/T|missense_variant	MED4|p.V125I|1|0.29|ENSG00000136146|chr13:48083419-48083419|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	604.3538208007812	2	604.355888	1206.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.139	1	39.837	39.337	40.337	-0.30137								0	0	0	0.95648	1	14891	14891		3.2813	0.28607	1				15597	9326	9536	9587	14960	14960					0.10214232119983535
IYQPRRKR	8	Unmodified	_IYQPRRKR_					0	0	0		STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant;STK11|p.P281Rfs*6|1|0.43|ENSG00000118046|chr19:1221315-1221315|C/-|frameshift_variant;ENST00000589152.5_1_19:1206825-1221398:+|nuORF;nc|ENSG00000118046|Q15831-2|STK11;ENSG00000118046|ENST00000326873|STK11	STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant	STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	372.8956298828125	3	372.896475	1115.66759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.5704	1	6.5704	6.0704	7.0704	0								0	0	0	0.8837	1	1979	1979		0.45834	0	1				15598	2596	9537	9588	14961	14961					0.11438757685186829
IYTFRNKDVR	10	Unmodified	_IYTFRNKDVR_					0	0	0		ENSG00000204702|ENST00000641659|OR2J1	ENSG00000204702|ENST00000641659|OR2J1	ENSG00000204702|ENST00000641659|OR2J1	MSMS	HCT116MG_D190212_S3	3	656.3604125976562	2	656.362036	1310.70952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.822	1	36.521	36.021	37.021	-0.30113								0	0	0	0.93854	1	13619	13619		7.2892	0	1				15599	6350	9538	9589	14962	14962					0.0665926858300736
IYVVWVLFMII	11	Unmodified	_IYVVWVLFMII_					0	0	0		ACER1|p.N116Efs*52|1|0.12|ENSG00000167769|chr19:6312153-6312154|-/C|frameshift_variant;ENSG00000167769|ENST00000301452|ACER1	ACER1|p.N116Efs*52|1|0.12|ENSG00000167769|chr19:6312153-6312154|-/C|frameshift_variant	ACER1|p.N116Efs*52|1|0.12|ENSG00000167769|chr19:6312153-6312154|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	698.4090576171875	2	698.409078	1394.8036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.424	1	46.313	45.813	46.813	-0.11121								0	0	0	0.94924	1	17682	17682		6.7232	1.4263	1				15600	22	9539	9590	14963	14963					0.12199271360941566
IYYCYHNFT	9	Unmodified	_IYYCYHNFT_					0	0	0		ENST00000473875.5_1_1:244724068-244773670:+|nuORF;nc|ENSG00000179397|Q5SY80-3|CATSPERE;nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	612.2645874023438	2	612.263142	1222.51173	0.6072	0.00037177	-0.8737	-0.00053494	-0.2665	-0.00016317	612.2625398140893	36.508	0.67297	36.386	35.973	36.646	-0.12177					35	12	3	0	0	0	0.33687	1	13567	13567		26.884	2.8631	1	108190000			15601	5555	9540	9591	14964	14964					-0.09062493671149241
IYYHTDDKTIV	11	Unmodified	_IYYHTDDKTIV_					0	0	0			REV__ENSG00000100558|ENST00000216446|PLEK2	REV__ENSG00000100558|ENST00000216446|PLEK2	MULTI-MSMS	HCT116MG_D190212_S1	1	684.3455200195312	2	684.345717	1366.67688	0.70186	0.00048031	-0.47806	-0.00032716	0.2238	0.00015316	684.3454866633489	57.023	0.20697	57.023	56.893	57.1	0					5	3	2	0	0	0	0.74191	1	21964	21964		3.5965	0	1	7141200	+		15602	11093	9541	9592	14965	14965					0.008210166694880172
IYYNEPIY	8	Unmodified	_IYYNEPIY_					0	0	0			REV__tr|U7SXZ1|U7SXZ1_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00931PE=4SV=1	REV__tr|U7SXZ1|U7SXZ1_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00931PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	537.7615966796875	2	537.760758	1073.50696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.233	1	39.855	39.355	40.355	-0.37828								0	0	0	0.8837	1	14753	14753		8.5933	0	1		+		15603	17865	9542	9593	14966	14966					-0.02685054542234866
IYYRLYEKRRE	11	Unmodified	_IYYRLYEKRRE_					0	0	0			REV__MACROD2|p.D33Y|1|0.39|ENSG00000172264|chr20:14002338-14002338|G/T|missense_variant	REV__MACROD2|p.D33Y|1|0.39|ENSG00000172264|chr20:14002338-14002338|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2913818359375	3	530.29133	1587.85216	0.36741	0.00019483	0.27028	0.00014333	0.63769	0.00033816	530.2912780971559	35.356	0.29865	35.213	35.036	35.335	-0.14245					15	5	4	0	0	0	0.74191	1	13188	13188		0.45452	0.45452	1	115190000	+		15604	16998	9543	9594	14967	14967					0.08174856254368024
KAADGLRR	8	Unmodified	_KAADGLRR_					0	0	0			REV__nc|ENSG00000113269|Q86XS8-2|RNF130	REV__nc|ENSG00000113269|Q86XS8-2|RNF130	MULTI-MSMS	HCT116MG_D190212_S4	4	443.78607177734375	2	443.764501	885.514448	0.2564	0.00011378	0.32157	0.0001427	0.57797	0.00025648	443.76446128065356	43.769	1.3126	43.394	42.859	44.171	-0.37433					75	35	4	0	0	0	0.85571	1	16104	16104		4.3292	0	1	12198000	+		15605	11478	9544	9595	14968	14968					0.06711142568701689
KAAKAQLEAQ	10	Unmodified	_KAAKAQLEAQ_					0	0	0		ENSG00000183304|ENST00000381003|FAM9A;FAM9A|p.A27Pfs*70|2|0.32|ENSG00000183304|chrX:8800093-8800093|C/-|frameshift_variant;FAM9A|p.K159Nfs*3|1|0.31|ENSG00000183304|chrX:8796279-8796279|T/-|frameshift_variant	ENSG00000183304|ENST00000381003|FAM9A	ENSG00000183304|ENST00000381003|FAM9A	MSMS	HCT116MG_D190212_S1	1	529.3033447265625	2	529.303655	1056.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.153	1	49.153	48.653	49.653	0								0	0	0	0.91638	1	18722	18722		12.241	1.1262	1				15606	5710	9545	9596	14969	14969					0.0667253036326656
KAAKKDKKVQ	10	Unmodified	_KAAKKDKKVQ_					0	0	0			REV__nc|ENSG00000146378|Q9P1P5-2|TAAR2	REV__nc|ENSG00000146378|Q9P1P5-2|TAAR2	MULTI-MSMS	HCT116MG_D190212_S2	2	572.3645629882812	2	572.364047	1142.71354	0.44051	0.00025213	0.3155	0.00018058	0.75601	0.00043271	572.3641436582144	60.547	0.2059	60.392	60.264	60.47	-0.15441					5	3	2	0	0	0	0.88752	1	23460	23460		1.6526	0.17072	1	14287000	+		15607	12485	9546	9597	14970	14970					0.14789358076723147
KAAKQIDRVLQ	11	Unmodified	_KAAKQIDRVLQ_					0	0	0			REV__nc|ENSG00000059573|P54886-2|ALDH18A1	REV__nc|ENSG00000059573|P54886-2|ALDH18A1	MSMS	HCT116MG_D190212_S2	2	635.3858032226562	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.377	1	48.233	47.733	48.733	-0.1437								0	0	0	0.94755	1	18481	18481		7.609	1.4032	1		+		15608	10663	9547	9598	14971	14971					0.13284128134182538
KAAKVVILKKA	11	Unmodified	_KAAKVVILKKA_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MSMS	HCT116MG_D190212_S3	3	584.9124755859375	2	584.910633	1167.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.716	1	52.41	51.91	52.91	-0.30639								0	0	0	0.95636	1	19935	19935		2.9952	0	1				15609	3279	9548	9599	14972	14972					0.22952282529990953
KAALRFLVLLR	11	Unmodified	_KAALRFLVLLR_					0	0	0		ENST00000487459.5_1_7:116660393-116660552:+|nuORF	ENST00000487459.5_1_7:116660393-116660552:+|nuORF	ENST00000487459.5_1_7:116660393-116660552:+|nuORF	MSMS	HCT116MG_D190212_S2	2	650.4360961914062	2	650.434807	1298.85506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.481	1	48.338	47.838	48.838	-0.1437								0	0	0	0.95636	1	18524	18524		2.9952	0	1				15610	8305	9549	9600	14973	14973					0.21758776169872363
KAAQVTAG	8	Unmodified	_KAAQVTAG_					0	0	0		ENST00000355202.8_1_19:38210295-38210535:-|nuORF	ENST00000355202.8_1_19:38210295-38210535:-|nuORF	ENST00000355202.8_1_19:38210295-38210535:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	745.4208374023438	1	745.420279	744.413003	0.96863	0.00072204	0.1453	0.00010831	1.1139	0.00083035	745.4203006275783	29.297	0.57353	29.297	29.112	29.685	0					20	10	3	0	0	0	0.28659	1	10702	10702		60.39	15.983	1	92860000			15611	7289	9550	9601	14974	14974					0.03057271146144558
KAAQVTAG	8	Unmodified	_KAAQVTAG_					0	0	0		ENST00000355202.8_1_19:38210295-38210535:-|nuORF	ENST00000355202.8_1_19:38210295-38210535:-|nuORF	ENST00000355202.8_1_19:38210295-38210535:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	745.4208374023438	1	745.420279	744.413003	1.2176	0.00090763	1.0396	0.00077495	2.2572	0.0016826	745.4208580788908	29.719	0.25807	29.418	29.237	29.495	-0.30095					7	4	2	0	0	0	0.28659	1	10908	10908		60.39	9.5345	1	28497000			15612	7289	9550	9601	14975	14975					0.03057271146144558
KACLKYYSL	9	Unmodified	_KACLKYYSL_					0	0	0		ENST00000498300.5_1_10:86198319-86273265:+|nuORF	ENST00000498300.5_1_10:86198319-86273265:+|nuORF	ENST00000498300.5_1_10:86198319-86273265:+|nuORF	MSMS	HCT116MG_D190212_S3	3	544.7955932617188	2	544.794078	1087.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.908	1	34.611	34.111	35.111	-0.29707								0	0	0	0.76694	1	12866	12866		11.64	0	1				15613	8408	9551	9602	14976	14976					0.03331857748003131
KADAVARLVA	10	Unmodified	_KADAVARLVA_					0	0	0		TICAM1|p.P642Hfs*50|6|0.25|ENSG00000127666|chr19:4816453-4816453|G/-|frameshift_variant;ENSG00000127666|ENST00000248244|TICAM1	TICAM1|p.P642Hfs*50|6|0.25|ENSG00000127666|chr19:4816453-4816453|G/-|frameshift_variant	TICAM1|p.P642Hfs*50|6|0.25|ENSG00000127666|chr19:4816453-4816453|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	507.30865478515625	2	507.308741	1012.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.853	1	29.499	28.999	29.999	-0.35357								0	0	0	0.83884	1	10798	10798		23.79	3.3752	1				15614	2976	9552	9603	14977	14977					0.0971313808852301
KADEKKFWGKY	11	Unmodified	_KADEKKFWGKY_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MSMS	HCT116MG_D190212_S1	1	700.3693237304688	2	700.372069	1398.72959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.895	1	40.895	40.395	41.395	0								0	0	0	0.94145	1	15384	15384		10.8	2.644	1			+	15615	555	9553	9604	14978	14978					0.046170195229706223
KADGIVSKNF	10	Unmodified	_KADGIVSKNF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MSMS	HCT116MG_D190212_S1	1	539.7978515625	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.219	1	29.219	28.719	29.719	0								0	0	0	0.58397	1	10671	10671		43.477	21.94	1				15616	5217	9554	9605	14979	14979					0.046171279889904326
KADGIVSKNF	10	Unmodified	_KADGIVSKNF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MSMS	HCT116MG_D190212_S2	2	539.79833984375	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.696	1	29.395	28.895	29.895	-0.30095								0	0	0	0.090351	1	10888	10888		84.738	40.756	1				15617	5217	9554	9605	14980	14980					0.046171279889904326
KADGIVSKNF	10	Unmodified	_KADGIVSKNF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MSMS	HCT116MG_D190212_S3	3	539.798583984375	2	539.798206	1077.58186	0.60631	0.00032729	0.12785	6.9015E-05	0.73417	0.0003963	539.7980267660857	29.586	0.20877	29.349	29.239	29.448	-0.23655					6	3	2	0	0	0	0.02986	1	10776	10776		102.55	58.567	1	4214900			15618	5217	9554	9605	14981	14981					0.046171279889904326
KADGIVSKNF	10	Unmodified	_KADGIVSKNF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MATCH	HCT116MG_D190212_S1	1		2	539.798206	1077.58186	0.69138	0.0003732	-0.44022	-0.00023763	0.25116	0.00013557	539.7976773211611	29.156	0.20902	29.156	29.007	29.216	0	-0.11708	-0.00045625	NaN	102.55	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4176600			15619	5217	9554	9605							0.046171279889904326
KADGIVSKNF	10	Unmodified	_KADGIVSKNF_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MATCH	HCT116MG_D190212_S2	2		2	539.798206	1077.58186	0.80996	0.00043721	0.082746	4.4666E-05	0.89271	0.00048188	539.797972305427	29.615	0.20689	29.314	29.185	29.392	-0.30095	0.041223	0.00010834	NaN	102.55	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10878000			15620	5217	9554	9605							0.046171279889904326
KADKDGPNYQP	11	Unmodified	_KADKDGPNYQP_					0	0	0			REV__TSHR|p.T620A|1|0.08|ENSG00000165409|chr14:81143916-81143916|A/G|missense_variant	REV__TSHR|p.T620A|1|0.08|ENSG00000165409|chr14:81143916-81143916|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	616.7994995117188	2	616.798934	1231.58332	0.2841	0.00017523	0.4155	0.00025628	0.6996	0.00043151	616.7989148911413	18.125	0.78098	18.201	17.737	18.518	0.076334					21	14	2	0	0	0	0.72004	1	6104	6104		14.405	2.1647	1	2006000	+		15621	18022	9555	9606	14982	14982					-0.023212827129327707
KADKDGPNYQP	11	Unmodified	_KADKDGPNYQP_					0	0	0			REV__TSHR|p.T620A|1|0.08|ENSG00000165409|chr14:81143916-81143916|A/G|missense_variant	REV__TSHR|p.T620A|1|0.08|ENSG00000165409|chr14:81143916-81143916|A/G|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	616.798934	1231.58332	0.2841	0.00017523	0.4155	0.00025628	0.6996	0.00043151	616.7989148911413	18.125	0.78098	18.201	17.737	18.518	0.076334	-0.00024652	0.00042354	NaN	14.405	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2006000	+		15622	18022	9555	9606							-0.023212827129327707
KADKDGPNYQP	11	Unmodified	_KADKDGPNYQP_					0	0	0			REV__TSHR|p.T620A|1|0.08|ENSG00000165409|chr14:81143916-81143916|A/G|missense_variant	REV__TSHR|p.T620A|1|0.08|ENSG00000165409|chr14:81143916-81143916|A/G|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	616.798934	1231.58332	0.47437	0.00029259	-0.36589	-0.00022568	0.10848	6.691E-05	616.7984861187692	18.382	0.7774	18.202	17.734	18.511	-0.18052	0.00024652	-0.00054039	NaN	14.405	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1491600	+		15623	18022	9555	9606							-0.023212827129327707
KADTEEEFL	9	Unmodified	_KADTEEEFL_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	541.2559814453125	2	541.256037	1080.49752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.236	1	40.934	40.434	41.434	-0.30185								0	0	0	0.32687	1	15333	15333		38.176	2.0485	1				15624	438	9556	9607	14983	14983					-0.03950867618414122
KADTVSKTEL	10	Unmodified	_KADTVSKTEL_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;ENST00000517342.1_1_8:57389817-57390279:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	HCT116MG_D190212_S1	1	546.3010864257812	2	546.300778	1090.587	0.48552	0.00026524	0.1275	6.9653E-05	0.61302	0.00033489	546.300924617455	22.924	0.20807	22.924	22.793	23.001	0					8	3	3	0	0	0	0.048151	1	8163	8163		88.576	44.184	1	11819000			15625	5893	9557	9608	14984	14984					0.045333870609510996
KADTVSKTEL	10	Unmodified	_KADTVSKTEL_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;ENST00000517342.1_1_8:57389817-57390279:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	HCT116MG_D190212_S2	2	546.3009643554688	2	546.300778	1090.587	0.40878	0.00022332	-0.15966	-8.7222E-05	0.24912	0.0001361	546.3005535859967	23.552	0.36287	23.169	22.936	23.299	-0.38324					9	6	2	0	0	0	0.32158	1	8424	8424		48.561	23.57	1	24087000			15626	5893	9557	9608	14985	14985					0.045333870609510996
KADTVSKTEL	10	Unmodified	_KADTVSKTEL_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;ENST00000517342.1_1_8:57389817-57390279:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	HCT116MG_D190212_S3	3	546.3009643554688	2	546.300778	1090.587	0.36081	0.00019711	-0.019704	-1.0764E-05	0.34111	0.00018635	546.300662437893	22.755	0.30018	22.736	22.543	22.844	-0.018869					9	5	2	0	0	0	0.054237	1	8004	8004		84.06	39.668	1	10972000			15627	5893	9557	9608	14986	14986					0.045333870609510996
KADTVSKTEL	10	Unmodified	_KADTVSKTEL_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10;ENST00000517342.1_1_8:57389817-57390279:-|nuORF	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	HCT116MG_D190212_S4	4	546.301513671875	2	546.300778	1090.587	0.33692	0.00018406	0.44039	0.00024058	0.77731	0.00042464	546.3010528798226	23.127	0.21075	22.889	22.758	22.968	-0.23758					5	3	2	0	0	0	0.55347	1	8107	8107		31.462	10.881	1	2475600			15628	5893	9557	9608	14987	14987					0.045333870609510996
KADVEEEFL	9	Unmodified	_KADVEEEFL_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	540.2662353515625	2	540.266404	1078.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.351	1	44.978	44.478	45.478	-0.37266								0	0	0	0.16977	1	16726	16726		49.554	9.597	1				15629	438	9558	9609	14988	14988					-0.017862772387616133
KADVQSIIGL	10	Unmodified	_KADVQSIIGL_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MSMS	HCT116MG_D190212_S1	1	522.478515625	2	522.308406	1042.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.003	1	50.003	49.503	50.503	0								0	0	0	0.078524	1	19068	19068		87.258	14.29	1				15630	3098	9559	9610	14989	14989					0.08266298648823067
KAEKKADVM	9	Oxidation (M)	_KAEKKADVM(Oxidation (M))_		KAEKKADVM(1)		KAEKKADVM(50)	0	0	1			REV__nc|ENSG00000118729|O14958-2|CASQ2	REV__nc|ENSG00000118729|O14958-2|CASQ2	MULTI-MSMS	HCT116MG_D190212_S3	3	518.279541015625	2	518.278792	1034.54303	0.35873	0.00018592	0.069109	3.5818E-05	0.42784	0.00022174	518.2789506787333	37.781	0.20406	37.479	37.456	37.66	-0.30137					21	15	2	0	0	0	0.14171	1	13996	13996		49.933	15.831	1	29252000	+		15631	11641	9560	9611	14990	14990		154			0.027140793629769178
KAETKAVL	8	Unmodified	_KAETKAVL_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MSMS	HCT116MG_D190212_S1	1	430.5700988769531	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.878	1	37.878	37.378	38.378	0								0	0	0	0.8837	1	14165	14165		2.5775	0	1		+		15632	14024	9561	9612	14991	14991					0.08254972902830104
KAFKGSIFV	9	Unmodified	_KAFKGSIFV_					0	0	0		ENSG00000138385|ENST00000260956|SSB	ENSG00000138385|ENST00000260956|SSB	ENSG00000138385|ENST00000260956|SSB	MSMS	HCT116MG_D190212_S2	2	498.7978210449219	2	498.797478	995.580402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.554	1	40.485	39.985	40.985	-0.069626								0	0	0	0.44802	1	15297	15297		31.268	5.869	1				15633	3554	9562	9613	14992	14992					0.08243538690908281
KAFNSRSNF	9	Unmodified	_KAFNSRSNF_					0	0	0		ZNF175|p.G598S|1|0.36|ENSG00000105497|chr19:51588123-51588123|G/A|missense_variant	ZNF175|p.G598S|1|0.36|ENSG00000105497|chr19:51588123-51588123|G/A|missense_variant	ZNF175|p.G598S|1|0.36|ENSG00000105497|chr19:51588123-51588123|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	535.7738037109375	2	535.772522	1069.53049	0.50557	0.00027087	1.7337	0.00092889	2.2393	0.0011998	535.7735272247824	32.165	0.31148	31.935	31.735	32.046	-0.23009					11	5	3	0	0	0	0.39784	1	11912	11912		22.736	4.5899	1	20419000			15634	18720	9563	9614	14993	14993					-0.0014919598504548048
KAGAKLNSLAF	11	Unmodified	_KAGAKLNSLAF_					0	0	0			REV__ENSG00000174243|ENST00000308025|DDX23	REV__ENSG00000174243|ENST00000308025|DDX23	MSMS	HCT116MG_D190212_S1	1	560.3851928710938	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.403	1	49.403	48.903	49.903	0								0	0	0	0.94851	1	18824	18824		7.1017	0.89594	1		+		15635	13474	9564	9615	14994	14994					0.09021693777026485
KAGAPRPS	8	Unmodified	_KAGAPRPS_					0	0	0			REV__ENSG00000136715|ENST00000643581|SAP130	REV__ENSG00000136715|ENST00000643581|SAP130	MSMS	HCT116MG_D190212_S4	4	392.2281188964844	2	392.22722	782.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.377	1	58.088	57.588	58.588	-0.28879								0	0	0	0.8837	1	21939	21939		2.3027	0	1		+		15636	12140	9565	9616	14995	14995					0.039963797573250304
KAGFSKAV	8	Unmodified	_KAGFSKAV_					0	0	0		tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	tr|U7SSG6|U7SSG6_FUSNUNH(3)-dependentNAD(+)synthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadEPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	404.2388610839844	2	404.239796	806.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.439	1	42.063	41.563	42.563	-0.37565								0	0	0	0.8837	1	15598	15598		2.3027	0	1				15637	18417	9566	9617	14996	14996					0.05406434559904483
KAGGRSFYSQ	10	Unmodified	_KAGGRSFYSQ_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-2|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-2|MYSM1	MULTI-SECPEP	HCT116MG_D190212_S1	1	551.30517578125	2	550.777805	1099.54106	0.52635	0.0002899	0.0058448	3.2192E-06	0.5322	0.00029312	550.7776266290647	34.102	0.31291	34.102	34.024	34.337	0					6	5	2	0	0	0	0.30457	1	12720	12720		7.609	0	1	3721100	+		15638	12883	9567	9618	14997	14997					-0.004732133306333708
KAGHGKSKVRL	11	Unmodified	_KAGHGKSKVRL_					0	0	0		nc|ENSG00000228741|Q96N96-4|SPATA13	nc|ENSG00000228741|Q96N96-4|SPATA13	nc|ENSG00000228741|Q96N96-4|SPATA13	MULTI-MSMS	HCT116MG_D190212_S4	4	394.2469787597656	3	394.247285	1179.72002	0.19936	7.8597E-05	-1.4229	-0.00056097	-1.2235	-0.00048237	394.2466209054828	55.324	0.46878	55.006	54.771	55.24	-0.31774					19	8	3	0	0	0	0.74191	1	20710	20710		0.45452	0.21867	1	7358800			15639	9642	9568	9619	14998	14998					0.13735296028130506
KAGIPDRR	8	Unmodified	_KAGIPDRR_					0	0	0		ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant	ENSG00000104218|ENST00000678616|CSPP1;CSPP1|p.Y522Mfs*18|1|0.25|ENSG00000104218|chr8:67118326-67118326|T/-|frameshift_variant	ENSG00000104218|ENST00000678616|CSPP1	MULTI-MSMS	HCT116MG_D190212_S3	3	456.7721252441406	2	456.772326	911.530098	0.25794	0.00011782	0.13052	5.9616E-05	0.38845	0.00017743	456.7722799577121	49.369	0.99627	49.053	48.657	49.654	-0.31596					60	18	5	0	0	0	0.85329	1	18739	18739		4.756	0	1	147830000			15640	1922;610	9569	9620	14999	14999					0.07079429085752054
KAGKGGTG	8	Unmodified	_KAGKGGTG_					0	0	0		ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	MULTI-MSMS	HCT116MG_D190212_S1	1	675.3812866210938	1	675.378414	674.371138	0.67748	0.00045755	1.8767	0.0012675	2.5542	0.001725	675.3795201668484	49.406	0.25721	49.406	49.286	49.543	0					7	4	2	0	0	0	0.85571	1	18838	18838		4.3292	0	1	29571000			15641	6651	9570	9621	15000	15000					0.02092715457615668
KAGKVRKH	8	Unmodified	_KAGKVRKH_					0	0	0		STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant;ENSG00000163527|ENST00000295770|STT3B	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	462.29888916015625	2	462.29851	922.582468	0.050856	2.3511E-05	0.37288	0.00017238	0.42374	0.00019589	462.2985956304252	60.909	2.171	60.909	60.698	62.869	0					84	41	3	0	0	0	0.87576	2	23714	23714;23944		0.79363	0	1	148410000			15642	4607	9571	9622	15001;15002	15001					0.11808012219375996
KAGKVRKH	8	Unmodified	_KAGKVRKH_					0	0	0		STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant;ENSG00000163527|ENST00000295770|STT3B	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	STT3B|p.E758Nfs*18|1|0.05|ENSG00000163527|chr3:31633017-31633018|-/AAACATTC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	462.29876708984375	2	462.29851	922.582468	0.24376	0.00011269	0.19038	8.8012E-05	0.43414	0.0002007	462.2985113551535	60.901	1.1423	60.753	60.579	61.721	-0.14852					39	21	3	0	0	0	0.87576	2	23593	23593;23828		0.79363	0	1	24182000			15643	4607	9571	9622	15003;15004	15003					0.11808012219375996
KAGLFQRQRQG	11	Unmodified	_KAGLFQRQRQG_					0	0	0			REV__ENST00000415259.5_2_3:51705946-51706057:+|nuORF	REV__ENST00000415259.5_2_3:51705946-51706057:+|nuORF	MSMS	HCT116MG_D190212_S1	1	644.8649291992188	2	644.865277	1287.716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.937	1	14.937	14.437	15.437	0								0	0	0	0.95273	1	4927	4927		4.897	2.1618	1		+		15644	15466	9572	9623	15005	15005					0.08365206534404024
KAGRAGHK	8	Unmodified	_KAGRAGHK_					0	0	0		ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MSMS	HCT116MG_D190212_S1	1	412.7463684082031	2	412.746111	823.477669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.444	1	47.444	46.944	47.944	0								0	0	0	0.8837	1	18026	18026		2.3027	0	1				15645	2025	9573	9624	15006	15006					0.05886890742806372
KAGRAGHK	8	Unmodified	_KAGRAGHK_					0	0	0		ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	HCT116MG_D190212_S3	3	412.7464904785156	2	412.746111	823.477669	0.24384	0.00010064	0.29315	0.000121	0.53699	0.00022164	412.7462183590148	48.894	0.99173	48.578	48.14	49.132	-0.31596					25	18	2	0	0	0	0.8672	1	18425	18425		2.3027	0	1	4961700			15646	2025	9573	9624	15007	15007					0.05886890742806372
KAGRAGHK	8	Unmodified	_KAGRAGHK_					0	0	0		ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	HCT116MG_D190212_S4	4	412.7462158203125	2	412.746111	823.477669	0.28308	0.00011684	-0.13876	-5.7273E-05	0.14432	5.9569E-05	412.7459997751305	47.033	2.0956	46.662	46.067	48.163	-0.37038					131	54	5	0	0	0	0.8672	1	17640	17640		2.3027	0	1	547240000			15647	2025	9573	9624	15008	15008					0.05886890742806372
KAGRVLLH	8	Unmodified	_KAGRVLLH_					0	0	0			REV__ENST00000425967.7_1_8:38270833-38271145:-|nuORF	REV__ENST00000425967.7_1_8:38270833-38271145:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	447.2873840332031	2	447.287611	892.56067	-0.023664	-1.0585E-05	0.19014	8.5047E-05	0.16648	7.4463E-05	447.28753347903887	61.019	0.46349	61.019	60.85	61.314	0					18	8	3	0	0	0	0.87576	1	23573	23573		0.79363	0	1	13695000	+		15648	15550	9574	9625	15009	15009					0.11009207470806359
KAGSTVKIER	10	Unmodified	_KAGSTVKIER_					0	0	0			REV__ENST00000603335.1_1_4:78033720-78034596:-|nuORF	REV__ENST00000603335.1_1_4:78033720-78034596:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	544.8250122070312	2	544.824755	1087.63496	0.4592	0.00025018	0.28505	0.0001553	0.74425	0.00040549	544.8246952074707	52.867	1.4447	52.678	51.933	53.377	-0.18922					73	27	4	0	0	0	0.8392	1	20469	20469		8.7454	0	1	99043000	+		15649	11189	9575	9626	15010	15010					0.09464505771666154
KAIGSLKEV	9	Unmodified	_KAIGSLKEV_					0	0	0		ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	ECT2|p.K832Rfs*25|1|0.1|ENSG00000114346|chr3:172815693-172815693|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.7923583984375	2	472.792392	943.570232	0.24377	0.00011525	-0.046056	-2.1775E-05	0.19771	9.3476E-05	472.79236154820654	27.879	0.25731	27.537	27.449	27.706	-0.34201					6	4	2	0	0	0	0.0060369	1	10170	10170		128.57	35.92	1	12519000			15650	752	9576	9627	15011	15011					0.09618930965655181
KAIIVIFKKRR	11	Unmodified	_KAIIVIFKKRR_					0	0	0			REV__ENST00000447250.1_2_6:19804550-19804649:-|nuORF	REV__ENST00000447250.1_2_6:19804550-19804649:-|nuORF	MSMS	HCT116MG_D190212_S2	2	458.0223083496094	3	457.98188	1370.92381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.818	1	49.654	49.154	50.154	-0.16369								0	0	0	0.9613	1	19078	19078		0.40827	0.041592	1		+		15651	15682	9577	9628	15012	15012					0.25318440469550296
KAIRIKRS	8	Unmodified	_KAIRIKRS_					0	0	0			REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	486.32794189453125	2	486.327268	970.639983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.947	1	60.799	60.299	61.299	-0.14852								0	0	0	0.8837	1	23599	23599		0.79363	0	1		+		15652	18012	9578	9629	15013	15013					0.15348854424951242
KAISGVHTV	9	Unmodified	_KAISGVHTV_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	456.2689514160156	2	456.269084	910.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.89	1	21.89	21.39	22.39	0								0	0	0	0.00042363	1	7723	7723		129.77	61.692	1				15653	769	9579	9630	15014	15014					0.06477491134364755
KAISGVHTV	9	Unmodified	_KAISGVHTV_					0	0	0		EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	EIF2S3|p.I441Nfs*4|1|0.29|ENSG00000130741|chrX:24073223-24073224|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	456.26953125	2	456.269084	910.523616	0.25408	0.00011593	0.16725	7.6312E-05	0.42133	0.00019224	456.26913050362344	22.514	0.20729	22.128	21.999	22.206	-0.3852					5	3	2	0	0	0	0.0058997	1	7986	7986		129.77	51.044	1	27003000			15654	769	9579	9630	15015	15015					0.06477491134364755
KAITPRRL	8	Unmodified	_KAITPRRL_					0	0	0		nc|ENSG00000172766|Q6N069-4|NAA16;nc|ENSG00000172766|Q6N069-3|NAA16;nc|ENSG00000172766|Q6N069-2|NAA16;NAA16|p.R628Ifs*4|1|0.06|ENSG00000172766|chr13:41369218-41369219|-/TTCT|frameshift_variant;ENSG00000172766|ENST00000379406|NAA16;nc|ENSG00000172766|Q6N069-5|NAA16;ENST00000476980.5_1_13:41885589-41929305:+|nuORF	nc|ENSG00000172766|Q6N069-4|NAA16	nc|ENSG00000172766|Q6N069-4|NAA16	MULTI-MSMS	HCT116MG_D190212_S1	1	477.81414794921875	2	477.813993	953.613434	0.078717	3.7612E-05	0.28771	0.00013747	0.36643	0.00017508	477.8138795795892	60.892	0.56393	60.892	60.698	61.262	0					21	10	3	0	0	0	0.87576	1	23486	23486		0.79363	0	1	46901000			15655	5261	9580	9631	15016	15016					0.13477165533618063
KAKAAEAKATT	11	Unmodified	_KAKAAEAKATT_					0	0	0		ENSG00000148341|ENST00000372564|SH3GLB2;ENST00000477165.1_1_9:131774250-131776725:-|nuORF	ENSG00000148341|ENST00000372564|SH3GLB2	ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	HCT116MG_D190212_S2	2	545.981689453125	2	545.316763	1088.61897	0.59575	0.00032487	-0.25808	-0.00014073	0.33767	0.00018414	545.3164683358575	48.705	1.4181	48.561	47.982	49.4	-0.1437					44	27	2	0	0	0	0.74191	1	18417	18417		4.897	4.897	1	73584000			15656	4018	9581	9632	15017	15017					0.07820799534738399
KAKAAGKG	8	Unmodified	_KAKAAGKG_					0	0	0		ENSG00000232112|ENST00000438607|TMA7	ENSG00000232112|ENST00000438607|TMA7	ENSG00000232112|ENST00000438607|TMA7	MSMS	HCT116MG_D190212_S1	1	365.7328186035156	2	365.732138	729.449723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.589	1	61.589	61.089	62.089	0								0	0	0	0.8837	1	23767	23767		0.79363	0	1				15657	6508	9582	9633	15018	15018					0.07417567762706767
KAKAKSAADPA	11	Unmodified	_KAKAKSAADPA_					0	0	0		ENST00000427525.2_1_15:85175210-85177593:+|nuORF	ENST00000427525.2_1_15:85175210-85177593:+|nuORF	ENST00000427525.2_1_15:85175210-85177593:+|nuORF	MSMS	HCT116MG_D190212_S2	2	529.3034057617188	2	529.303655	1056.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.052	1	48.898	48.398	49.398	-0.15405								0	0	0	0.9465	1	18761	18761		8.1555	0.24537	1				15658	7824	9583	9634	15019	15019					0.0667253036326656
KAKATSSA	8	Unmodified	_KAKATSSA_					0	0	0		ENST00000584868.1_1_19:40827171-40828232:-|nuORF;ENST00000582734.1_1_19:40827791-40830098:-|nuORF;nc|nan|Q8N9M1-3|C19orf47;nc|nan|Q8N9M1-2|C19orf47;ENSG00000160392|ENST00000683109|C19orf47;nc|nan|Q8N9M1|C19orf47	ENST00000584868.1_1_19:40827171-40828232:-|nuORF	ENST00000584868.1_1_19:40827171-40828232:-|nuORF	MSMS	HCT116MG_D190212_S4	4	382.2200622558594	2	382.21906	762.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.774	1	43.399	42.899	43.899	-0.37433								0	0	0	0.8837	1	16102	16102		2.3027	0	1				15659	4448	9584	9635	15020	15020					0.03285253800572718
KAKHAVVS	8	Unmodified	_KAKHAVVS_					0	0	0			REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	MSMS	HCT116MG_D190212_S4	4	420.2590637207031	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.829	1	58.546	58.046	59.046	-0.28305								0	0	0	0.8837	1	22122	22122		2.3027	0	1		+		15660	13894	9585	9636	15021	15021					0.07677525825511111
KAKIQKRLFKK	11	Unmodified	_KAKIQKRLFKK_					0	0	0			REV__nc|ENSG00000137760|Q96BT7-3|ALKBH8	REV__nc|ENSG00000137760|Q96BT7-3|ALKBH8	MSMS	HCT116MG_D190212_S3	3	694.4655151367188	2	694.466638	1386.91872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.8	1	61.562	61.062	62.062	-0.2387								0	0	0	0.96149	1	23595	23595		0.30703	0	1		+		15661	12187	9586	9637	15022	15022					0.24074136606941465
KAKKEKRK	8	Unmodified	_KAKKEKRK_					0	0	0		ENST00000361589.8_1_3:173302592-173322094:+|nuORF	ENST00000361589.8_1_3:173302592-173322094:+|nuORF	ENST00000361589.8_1_3:173302592-173322094:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	508.3397521972656	2	508.340375	1014.6662	0.2845	0.00014462	-0.14297	-7.2675E-05	0.14154	7.1948E-05	508.34014675555596	60.779	1.2891	60.779	60.595	61.884	0					36	24	3	0	0	0	0.86564	1	23457	23457		2.5775	0	1	64131000			15662	7360	9587	9638	15023	15023					0.15945123596418398
KAKKKEQPRRH	11	Unmodified	_KAKKKEQPRRH_					0	0	0			REV__ENSG00000084652|ENST00000373610|TXLNA	REV__ENSG00000084652|ENST00000373610|TXLNA	MSMS	HCT116MG_D190212_S2	2	703.4283447265625	2	703.428576	1404.8426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.624	1	48.481	47.981	48.981	-0.1437								0	0	0	0.95686	1	18583	18583		2.7352	0	1		+		15663	10914	9588	9639	15024	15024					0.15637132759547967
KAKKKKER	8	Unmodified	_KAKKKKER_					0	0	0		BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant;ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant	BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	508.3406066894531	2	508.340375	1014.6662	0.2845	0.00014462	-0.14297	-7.2675E-05	0.14154	7.1948E-05	508.34014675555596	60.779	1.2891	60.779	60.595	61.884	0					36	24	3	0	0	0	0.87576	1	23853	23853		0.79363	0	1	64131000			15664	250	9589	9640	15025	15025					0.15945123596418398
KAKKLKTLKKF	11	Unmodified	_KAKKLKTLKKF_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|143|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|143|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|143|3|sense	MSMS	HCT116MG_D190212_S2	2	666.9577026367188	2	666.958115	1331.90168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.842	1	36.727	36.227	37.227	-0.11478								0	0	0	0.96149	1	13790	13790		0.30703	0.30703	1				15665	9279	9590	9641	15026	15026					0.2490021600115142
KAKKPFNNPEL	11	Unmodified	_KAKKPFNNPEL_					0	0	0			REV__PUS7L|p.P71A|1|0.23|ENSG00000129317|chr12:43755035-43755035|G/C|missense_variant	REV__PUS7L|p.P71A|1|0.23|ENSG00000129317|chr12:43755035-43755035|G/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	643.3651733398438	2	643.366787	1284.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.047	1	48.893	48.393	49.393	-0.15405								0	0	0	0.94851	1	18759	18759		7.1017	1.3699	1		+		15666	17457	9591	9642	15027	15027					0.08805036868579919
KAKPKDRERK	10	Unmodified	_KAKPKDRERK_					0	0	0			REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	628.905029296875	2	628.383303	1254.75205	0.21828	0.00013717	-0.58775	-0.00036933	-0.36946	-0.00023216	628.3829603351295	49.717	1.1179	49.553	48.824	49.942	-0.16369					55	21	4	0	0	0	0.87239	2	18799	18799;18888		5.2969	1.7004	1	158810000	+		15667	11734	9592	9643	15028;15029	15028					0.13486663711250912
KAKPKDRERK	10	Unmodified	_KAKPKDRERK_					0	0	0			REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	628.2453002929688	2	628.383303	1254.75205	0.21828	0.00013717	-0.58775	-0.00036933	-0.36946	-0.00023216	628.3829603351295	49.717	1.1179	49.553	48.824	49.942	-0.16369					55	21	4	0	0	0	0.31063	1	18953	18953		2.9952	0.49676	1	158810000	+		15668	11734	9592	9643	15030	15030					0.13486663711250912
KAKPKDRERK	10	Unmodified	_KAKPKDRERK_					0	0	0			REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	628.38330078125	2	628.383303	1254.75205	0.36488	0.00022928	-1.1043	-0.00069392	-0.73942	-0.00046464	628.3825478494224	50.483	0.83446	50.17	49.604	50.438	-0.31381					21	15	2	0	0	0	0.87239	2	18910	18910;19144		5.2969	3.4526	1	8950800	+		15669	11734	9592	9643	15031;15032	15031					0.13486663711250912
KAKPKDRERK	10	Unmodified	_KAKPKDRERK_					0	0	0			REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	628.4711303710938	2	628.383303	1254.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.469	1	49.154	48.654	49.654	-0.31596								0	0	0	0.93202	1	18630	18630		8.7454	2.5396	1		+		15670	11734	9592	9643	15033	15033					0.13486663711250912
KAKPKDRERK	10	Unmodified	_KAKPKDRERK_					0	0	0			REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	REV__RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	628.383303	1254.75205	0.36488	0.00022928	-1.1043	-0.00069392	-0.73942	-0.00046464	628.3825478494224	50.483	0.83446	50.17	49.604	50.438	-0.31381	0	0	NaN	5.2969	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8950800	+		15671	11734	9592	9643							0.13486663711250912
KAKPKKEKTD	10	Unmodified	_KAKPKKEKTD_					0	0	0			REV__ENST00000472109.1_1_17:42797605-42797962:-|nuORF	REV__ENST00000472109.1_1_17:42797605-42797962:-|nuORF	MSMS	HCT116MG_D190212_S2	2	586.8510131835938	2	586.853512	1171.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.883	1	49.72	49.22	50.22	-0.16369								0	0	0	0.93202	1	19104	19104		8.7454	0.58988	1		+		15672	15881	9593	9644	15034	15034					0.11349347977215984
KAKPLVHKRT	10	Unmodified	_KAKPLVHKRT_					0	0	0			REV__nc|nan|Q6P387-2|C16orf46	REV__nc|nan|Q6P387-2|C16orf46	MSMS	HCT116MG_D190212_S1	1	589.3804931640625	2	589.380032	1176.74551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.265	1	51.265	50.765	51.765	0								0	0	0	0.95648	1	19582	19582		3.2813	1.6287	1		+		15673	13109	9594	9645	15035	15035					0.16420770550530506
KAKPQFLQKR	10	Unmodified	_KAKPQFLQKR_					0	0	0		ENSG00000204161|ENST00000374153|TMEM273	ENSG00000204161|ENST00000374153|TMEM273	ENSG00000204161|ENST00000374153|TMEM273	MSMS	HCT116MG_D190212_S1	1	622.3858032226562	2	622.385314	1242.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.887	1	23.887	23.387	24.387	0								0	0	0	0.95648	1	8527	8527		3.2813	0	1				15674	6323	9595	9646	15036	15036					0.14440753204962675
KAKPYRSL	8	Unmodified	_KAKPYRSL_					0	0	0		nc|ENSG00000145757|Q9BWV2-2|SPATA9;ENSG00000145757|ENST00000274432|SPATA9	nc|ENSG00000145757|Q9BWV2-2|SPATA9	nc|ENSG00000145757|Q9BWV2-2|SPATA9	MULTI-MSMS	HCT116MG_D190212_S2	2	482.0696716308594	2	481.792727	961.5709	0.44552	0.00021465	-4.2963	-0.0020699	-3.8508	-0.0018553	481.79059904217985	48.151	0.25328	48.018	47.892	48.145	-0.13281					5	4	2	0	0	0	0.78216	1	18411	18411		13.508	1.8676	1	46151000			15675	3922	9596	9647	15037	15037					0.08857770405370502
KAKQINVLKP	10	Unmodified	_KAKQINVLKP_					0	0	0			REV__ZYG11A|p.L103P|1|0.37|ENSG00000203995|chr1:52857049-52857049|T/C|missense_variant	REV__ZYG11A|p.L103P|1|0.37|ENSG00000203995|chr1:52857049-52857049|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.8688354492188	2	569.868966	1137.72338	0.46356	0.00026417	0.26856	0.00015304	0.73211	0.00041721	569.8689007044434	59.753	0.94623	59.593	59.312	60.258	-0.16012					32	18	3	0	0	0	0.87945	1	23092	23092		3.5965	0.31518	1	18937000	+		15676	18097	9597	9648	15038	15038					0.1600254608213163
KAKRFHYVVL	10	Unmodified	_KAKRFHYVVL_					0	0	0			REV__GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	REV__GPR158|p.A1124Lfs*2|1|0.07|ENSG00000151025|chr10:25598987-25598987|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	630.8829345703125	2	630.882407	1259.75026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.078	1	60.078	59.578	60.578	0								0	0	0	0.96377	1	23151	23151		1.6526	0.32309	1		+		15677	12592	9598	9649	15039	15039					0.13077654693302065
KAKRLFLK	8	Unmodified	_KAKRLFLK_					0	0	0		tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1	tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1	tr|U7SXB9|U7SXB9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00970PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	502.3404235839844	2	502.342387	1002.67022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.353	1	58.183	57.683	58.683	-0.1703								0	0	0	0.8837	1	22550	22550		0.69038	0	1				15678	18511	9599	9650	15040	15040					0.16899213090118792
KAKSVGGK	8	Unmodified	_KAKSVGGK_					0	0	0			REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	387.745849609375	2	387.745245	773.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.308	1	61.165	60.665	61.665	-0.14227								0	0	0	0.8837	1	23744	23744		0.79363	0	1		+		15679	12909	9600	9651	15041	15041					0.08013836934196661
KAKVKSSSTEL	11	Unmodified	_KAKVKSSSTEL_					0	0	0			REV__nc|ENSG00000183401|P0C7I6-6|CCDC159	REV__nc|ENSG00000183401|P0C7I6-6|CCDC159	MULTI-MSMS	HCT116MG_D190212_S3	3	589.685791015625	2	589.342978	1176.6714	0.48413	0.00028532	-0.22053	-0.00012997	0.2636	0.00015535	589.3427926825761	50.698	1.4098	50.384	49.76	51.17	-0.31381					33	26	2	0	0	0	0.73844	1	19022	19022		7.609	3.6646	1	5557100	+		15680	13761	9601	9652	15042	15042					0.09013337877718186
KAKVKSSSTEL	11	Unmodified	_KAKVKSSSTEL_					0	0	0			REV__nc|ENSG00000183401|P0C7I6-6|CCDC159	REV__nc|ENSG00000183401|P0C7I6-6|CCDC159	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	589.342978	1176.6714	0.56814	0.00033483	-0.09928	-5.851E-05	0.46886	0.00027632	589.3428235557675	50.518	2.0579	50.159	49.551	51.609	-0.35878	-0.11248	1.6861E-05	NaN	7.609	98	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28864000	+		15681	13761	9601	9652							0.09013337877718186
KAKWLYLWLK	10	Unmodified	_KAKWLYLWLK_					0	0	0		ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	MSMS	HCT116MG_D190212_S1	1	674.9105834960938	2	674.910633	1347.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.923	1	59.923	59.423	60.423	0								0	0	0	0.96911	1	23093	23093		0.45834	0	1				15682	4171	9602	9653	15043	15043					0.14672282529954828
KALAPKSLGN	10	Unmodified	_KALAPKSLGN_					0	0	0			REV__tr|U7SUW1|U7SUW1_FUSNUPrecorrin-8XmethylmutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01027PE=3SV=1	REV__tr|U7SUW1|U7SUW1_FUSNUPrecorrin-8XmethylmutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01027PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	499.8030700683594	2	499.803291	997.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.265	1	22.265	21.765	22.765	0								0	0	0	0.93202	1	7874	7874		8.7454	2.0222	1		+		15683	17835	9603	9654	15044	15044					0.09313735714226823
KALFRKIRFTK	11	Unmodified	_KALFRKIRFTK_					0	0	0			REV__ENSG00000198918|ENST00000361575|RPL39	REV__ENSG00000198918|ENST00000361575|RPL39	MSMS	HCT116MG_D190212_S1	1	704.4490966796875	2	704.450988	1406.88742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.291	1	60.291	59.791	60.791	0								0	0	0	0.96141	1	23238	23238		0.35063	0	1		+		15684	14165	9604	9655	15045	15045					0.20025563572858118
KALGGATQ	8	Unmodified	_KALGGATQ_					0	0	0		ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	MULTI-MSMS	HCT116MG_D190212_S1	1	373.2137145996094	2	373.213778	744.413003	0.059572	2.2233E-05	0.035977	1.3427E-05	0.095549	3.566E-05	373.2136738539063	29.342	0.2083	29.342	29.216	29.425	0					8	3	3	0	0	0	0.71077	1	10728	10728		21.747	3.6117	1	14811000			15685	5490	9605	9656	15046	15046					0.03057271146144558
KALGGATQ	8	Unmodified	_KALGGATQ_					0	0	0		ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	MULTI-MATCH	HCT116MG_D190212_S2	2		2	373.213778	744.413003	0.033084	1.2347E-05	0.24462	9.1296E-05	0.2777	0.00010364	373.21385070164087	29.707	0.20648	29.406	29.289	29.495	-0.30095	0.031618	4.265E-05	NaN	21.747	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4494500			15686	5490	9605	9656							0.03057271146144558
KALIFKKIRK	10	Unmodified	_KALIFKKIRK_					0	0	0			REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1	REV__tr|U7SRZ5|U7SRZ5_FUSNUUPF0042nucleotide-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01483PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	622.93359375	2	622.9319	1243.84925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.298	1	37.195	36.695	37.695	-0.10318								0	0	0	0.96937	1	13976	13976		0.40072	0	1		+		15687	17762	9606	9657	15047	15047					0.2370767765819437
KALQFLEEV	9	Unmodified	_KALQFLEEV_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant;CCT6A|p.Y250Tfs*11|2|0.27|ENSG00000146731|chr7:56058378-56058378|T/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S1	1	538.803466796875	2	538.802957	1075.59136	0.41709	0.00022473	0.0036287	1.9551E-06	0.42072	0.00022669	538.8028225721686	51.832	0.21182	51.832	51.704	51.916	0					6	3	2	0	0	0	0.020181	1	19824	19824		96.285	18.135	1	25861000			15688	3958	9607	9658	15048	15048					0.05658896274530889
KALRKIQKLIK	11	Unmodified	_KALRKIQKLIK_					0	0	0		nc|ENSG00000091137|O43511-2|SLC26A4;ENSG00000091137|ENST00000644269|SLC26A4	nc|ENSG00000091137|O43511-2|SLC26A4	nc|ENSG00000091137|O43511-2|SLC26A4	MSMS	HCT116MG_D190212_S2	2	669.9706420898438	2	669.969014	1337.92348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.312	1	61.17	60.67	61.67	-0.14227								0	0	0	0.96141	1	23746	23746		0.35063	0.043601	1				15689	1554	9608	9659	15049	15049					0.2680302074973042
KALSKTSK	8	Unmodified	_KALSKTSK_					0	0	0		ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	431.7720947265625	2	431.77146	861.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.049	1	60.901	60.401	61.401	-0.14852								0	0	0	0.8837	1	23640	23640		2.3027	0.24298	1				15690	126	9609	9660	15050	15050					0.09206375277142342
KAMSHIRKP	9	Unmodified	_KAMSHIRKP_					0	0	0			REV__ENSG00000182601|ENST00000331351|HS3ST4	REV__ENSG00000182601|ENST00000331351|HS3ST4	MSMS	HCT116MG_D190212_S4	4	534.7782592773438	2	534.310761	1066.60697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.646	1	43.272	42.772	43.772	-0.37433								0	0	0	0.76818	1	16051	16051		7.2892	0.56607	1		+		15691	13722	9610	9661	15051	15051					0.07632904310594313
KAMWLARRRRR	11	Unmodified	_KAMWLARRRRR_					0	0	0			REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF	REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	750.453125	2	750.451862	1498.88917	0.71006	0.00053286	0.74146	0.00055643	1.4515	0.0010893	750.4523798522339	59.787	0.15401	59.787	59.678	59.832	0					8	5	2	0	0	0	0.74191	1	23055	23055		0.35063	0.35063	1	1108400	+		15692	15393	9611	9662	15052	15052					0.15968294109802628
KAMWLARRRRR	11	Unmodified	_KAMWLARRRRR_					0	0	0			REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF	REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	750.4513549804688	2	750.451862	1498.88917	0.71039	0.00053312	0.66435	0.00049856	1.3747	0.0010317	750.4523063174466	61.658	1.298	61.658	61.262	62.56	0					57	24	3	0	0	0	0.74191	2	23787	23787;24031		0.30703	0.30703	1	6033100	+		15693	15393	9611	9662	15053;15054	15053					0.15968294109802628
KAMWLARRRRR	11	Unmodified	_KAMWLARRRRR_					0	0	0			REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF	REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	750.451862	1498.88917	0.71006	0.00053286	0.74146	0.00055643	1.4515	0.0010893	750.4523798522339	59.787	0.15401	59.787	59.678	59.832	0	0	0	NaN	0.35063	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1108400	+		15694	15393	9611	9662							0.15968294109802628
KAPAKKPKPE	10	Unmodified	_KAPAKKPKPE_					0	0	0			REV__ENST00000261249.6_1_14:61438965-61439184:-|nuORF	REV__ENST00000261249.6_1_14:61438965-61439184:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	547.3323974609375	2	547.340041	1092.66553	0.38707	0.00021186	-2.8098	-0.0015379	-2.4227	-0.001326	547.3388141524796	49.879	0.41183	49.879	49.699	50.111	0					11	7	2	0	0	0	0.8806	1	19013	19013		3.2813	0	1	23137000	+		15695	14154	9612	9663	15055	15055					0.12290284156688358
KAPIRTANAQ	10	Unmodified	_KAPIRTANAQ_					0	0	0			REV__nc|ENSG00000186868|P10636-5|MAPT	REV__nc|ENSG00000186868|P10636-5|MAPT	MSMS	HCT116MG_D190212_S3	3	535.3099975585938	2	535.309272	1068.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.056	1	51.747	51.247	52.247	-0.30927								0	0	0	0.94551	1	19670	19670		5.7319	0.97584	1		+		15696	17250	9613	9664	15056	15056					0.07243352457385299
KAPKGFAM	8	Unmodified	_KAPKGFAM_					0	0	0			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MSMS	HCT116MG_D190212_S3	3	425.23480224609375	2	425.236199	848.457844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.263	1	62.031	61.531	62.531	-0.23129								0	0	0	0.8837	1	23782	23782		2.5775	0	1		+		15697	13887	9614	9665	15057	15057					0.027553786878115716
KAPKKKKKKKK	11	Unmodified	_KAPKKKKKKKK_					0	0	0			REV__ENST00000368679.8_1_10:127702855-127703017:-|nuORF	REV__ENST00000368679.8_1_10:127702855-127703017:-|nuORF	MSMS	HCT116MG_D190212_S2	2	670.4873046875	2	670.484831	1338.95511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.482	1	44.397	43.897	44.897	-0.084797								0	0	0	0.96157	1	16895	16895		0.26902	0	1		+		15698	15135	9615	9666	15058	15058					0.29919013503649694
KAPKKKPSVL	10	Unmodified	_KAPKKKPSVL_					0	0	0		nc|ENSG00000184481|P98177-2|FOXO4;ENSG00000184481|ENST00000374259|FOXO4	nc|ENSG00000184481|P98177-2|FOXO4	nc|ENSG00000184481|P98177-2|FOXO4	MSMS	HCT116MG_D190212_S3	3	548.364013671875	2	548.366059	1094.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.347	1	46.035	45.535	46.535	-0.31237								0	0	0	0.95648	1	17375	17375		3.2813	1.4371	1				15699	5773	9616	9667	15059	15059					0.17399447570460325
KAQADLNSGLY	11	Unmodified	_KAQADLNSGLY_					0	0	0			REV__CES3|p.S400L|1|0.08|ENSG00000172828|chr16:66971227-66971227|C/T|missense_variant	REV__CES3|p.S400L|1|0.08|ENSG00000172828|chr16:66971227-66971227|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	590.3033447265625	2	590.303852	1178.59315	0.49439	0.00029184	-0.52726	-0.00031124	-0.032867	-1.9402E-05	590.3033604494858	30.601	0.23751	30.351	30.274	30.511	-0.24946					11	6	2	0	0	0	0.26087	1	11149	11149		74.2	24.267	1	15109000	+		15700	10165	9617	9668	15060	15060					0.010999052924944408
KAQADLNSGLY	11	Unmodified	_KAQADLNSGLY_					0	0	0			REV__CES3|p.S400L|1|0.08|ENSG00000172828|chr16:66971227-66971227|C/T|missense_variant	REV__CES3|p.S400L|1|0.08|ENSG00000172828|chr16:66971227-66971227|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	590.303852	1178.59315	0.49439	0.00029184	-0.52726	-0.00031124	-0.032867	-1.9402E-05	590.3033604494858	30.601	0.23751	30.351	30.274	30.511	-0.24946	0.045249	-0.00032766	NaN	74.2	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15109000	+		15701	10165	9617	9668							0.010999052924944408
KAQILKRRLVP	11	Unmodified	_KAQILKRRLVP_					0	0	0		ENST00000372583.5_1_1:42049420-42049822:-|nuORF	ENST00000372583.5_1_1:42049420-42049822:-|nuORF	ENST00000372583.5_1_1:42049420-42049822:-|nuORF	MSMS	HCT116MG_D190212_S1	1	441.29766845703125	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.299	1	11.299	10.799	11.799	0								0	0	0	0.9619	1	3544	3544		0.094841	0.011491	1				15702	7460	9618	9669	15061	15061					0.22417277055819795
KAQILKRRLVP	11	Unmodified	_KAQILKRRLVP_					0	0	0		ENST00000372583.5_1_1:42049420-42049822:-|nuORF	ENST00000372583.5_1_1:42049420-42049822:-|nuORF	ENST00000372583.5_1_1:42049420-42049822:-|nuORF	MSMS	HCT116MG_D190212_S3	3	441.2978515625	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.118	1	11.165	10.665	11.665	0.04739								0	0	0	0.9619	1	3399	3399		0.094841	0.011491	1				15703	7460	9618	9669	15062	15062					0.22417277055819795
KAQQLEQTLRA	11	Unmodified	_KAQQLEQTLRA_					0	0	0			REV__CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant	REV__CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	429.71441650390625	3	429.245609	1284.715	-0.040564	-1.7412E-05	-0.011509	-4.94E-06	-0.052073	-2.2352E-05	429.24572042726084	21.474	0.25978	21.091	21.013	21.273	-0.38288					9	4	3	0	0	0	0.69148	1	7593	7593		16.746	3.2116	1	13091000	+		15704	10151	9619	9670	15063	15063					0.08402947374861469
KAQRPLRV	8	Unmodified	_KAQRPLRV_					0	0	0		nc|ENSG00000132677|Q9H310-4|RHBG;nc|ENSG00000132677|Q9H310-3|RHBG;nc|ENSG00000132677|Q9H310-2|RHBG;ENSG00000132677|ENST00000537040|RHBG	nc|ENSG00000132677|Q9H310-4|RHBG	nc|ENSG00000132677|Q9H310-4|RHBG	MULTI-MSMS	HCT116MG_D190212_S1	1	484.3115539550781	2	484.311618	966.608683	0.12771	6.1853E-05	0.21619	0.0001047	0.3439	0.00016656	484.3116253432719	60.774	2.1701	60.774	60.595	62.765	0					70	41	2	0	0	0	0.87576	2	23670	23670;23914		0.79363	0	1	177110000			15705	3201	9620	9671	15064;15065	15064					0.12404281390843153
KARKLIIIIKL	11	Unmodified	_KARKLIIIIKL_					0	0	0			REV__ENST00000468148.5_1_6:57086941-57087007:-|nuORF	REV__ENST00000468148.5_1_6:57086941-57087007:-|nuORF	MSMS	HCT116MG_D190212_S3	3	436.9876403808594	3	436.986631	1307.93806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.601	1	43.295	42.795	43.795	-0.30616								0	0	0	0.96192	1	16274	16274		0.08335	0.08335	1		+		15706	15842	9621	9672	15066	15066					0.2964109289789576
KARKNYRKY	9	Unmodified	_KARKNYRKY_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MSMS	HCT116MG_D190212_S2	2	614.2905883789062	2	613.859464	1225.70437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.639	1	38.554	38.054	39.054	-0.084618								0	0	0	0.76718	1	14519	14519		10.824	0.75	1				15707	4885	9622	9673	15067	15067					0.10055009511074786
KARLFTAFI	9	Unmodified	_KARLFTAFI_					0	0	0		ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1	ENSG00000197381|ENST00000348831|ADARB1	ENSG00000197381|ENST00000348831|ADARB1	MSMS	HCT116MG_D190212_S4	4	356.2177734375	3	356.218443	1065.6335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.624	1	50.27	49.77	50.77	-0.35483								0	0	0	0.76948	1	18815	18815		2.7352	0	1				15708	6140	9623	9674	15068	15068					0.10330916473549223
KARNRIKKK	9	Unmodified	_KARNRIKKK_					0	0	0			REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	MSMS	HCT116MG_D190212_S1	1	381.2591857910156	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.369	1	62.369	61.869	62.869	0								0	0	0	0.77018	1	24082	24082		0.26902	0	1		+		15709	14842	9624	9675	15069	15069					0.1919959264469071
KARQRRKPRV	10	Unmodified	_KARQRRKPRV_					0	0	0		ENSG00000180053|ENST00000325017|NKX2-6	ENSG00000180053|ENST00000325017|NKX2-6	ENSG00000180053|ENST00000325017|NKX2-6	MSMS	HCT116MG_D190212_S2	2	432.2803955078125	3	432.281211	1293.8218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.542	1	61.4	60.9	61.9	-0.14227								0	0	0	0.97045	1	23838	23838		0.15932	0	1				15710	5581	9625	9676	15070	15070					0.18664587170519553
KARRVKGL	8	Unmodified	_KARRVKGL_					0	0	0			REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	464.31439208984375	2	464.314161	926.613768	0.080689	3.7465E-05	0.087451	4.0605E-05	0.16814	7.807E-05	464.3141180438169	61.01	1.8642	61.01	60.799	62.664	0					64	35	3	0	0	0	0.87576	2	23758	23758;24036		0.79363	0	1	78572000	+		15711	10375	9626	9677	15071;15072	15071					0.14752585253472716
KARRVKGL	8	Unmodified	_KARRVKGL_					0	0	0			REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	464.3141174316406	2	464.314161	926.613768	0.25845	0.00012	0.011724	5.4438E-06	0.27017	0.00012544	464.3140954685997	60.993	0.7792	60.844	60.63	61.41	-0.14852					26	14	2	0	0	0	0.87576	1	23639	23639		0.79363	0	1	9667300	+		15712	10375	9626	9677	15073	15073					0.14752585253472716
KARRVKGL	8	Unmodified	_KARRVKGL_					0	0	0			REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	464.314161	926.613768	0.080689	3.7465E-05	0.087451	4.0605E-05	0.16814	7.807E-05	464.3141180438169	61.01	1.8642	61.01	60.799	62.664	0	0.082819	2.8348E-05	NaN	0.79363	64	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78572000	+		15713	10375	9626	9677							0.14752585253472716
KARRVKGL	8	Unmodified	_KARRVKGL_					0	0	0			REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	464.314161	926.613768	0.25845	0.00012	0.011724	5.4438E-06	0.27017	0.00012544	464.3140954685997	60.993	0.7792	60.844	60.63	61.41	-0.14852	-0.082819	-4.1974E-05	NaN	0.79363	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9667300	+		15714	10375	9626	9677							0.14752585253472716
KARYKRLL	8	Unmodified	_KARYKRLL_					0	0	0			REV__ENSG00000147381|ENST00000276344|MAGEA4	REV__ENSG00000147381|ENST00000276344|MAGEA4	MSMS	HCT116MG_D190212_S3	3	524.3413696289062	2	524.342918	1046.67128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.878	1	48.562	48.062	49.062	-0.31596								0	0	0	0.8837	1	18394	18394		5.7604	0	1		+		15715	12511	9627	9678	15074	15074					0.1498142745901987
KASDLYITL	9	Unmodified	_KASDLYITL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2896118164062	2	512.289682	1022.56481	0.30331	0.00015539	-0.60272	-0.00030877	-0.29941	-0.00015338	512.2892340303639	50.375	0.26208	50.203	50.036	50.298	-0.1719					9	4	3	0	0	0	0.17622	1	19339	19339		43.772	3.8227	1	21008000			15716	3811	9628	9679	15075	15075					0.05443207383166282
KASEPREP	8	Unmodified	_KASEPREP_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18;REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MSMS	HCT116MG_D190212_S1	1	457.23992919921875	2	457.240524	912.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.881	1	17.881	17.381	18.381	0								0	0	0	0.81076	1	6113	6113		21.747	1.293	1		+		15717	13703;17234	9629	9680	15076	15076					0.0067602385800000775
KASKSSLKSIE	11	Unmodified	_KASKSSLKSIE_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-4|SCN8A	MULTI-MSMS	HCT116MG_D190212_S1	1	589.3428955078125	2	589.342978	1176.6714	0.42312	0.00024936	0.078319	4.6157E-05	0.50144	0.00029552	589.342836933535	48.237	1.1336	48.237	47.841	48.974	0					37	21	3	0	0	0	0.74191	1	18414	18414		4.5289	0.93237	1	53073000	+		15718	14051	9630	9681	15077	15077					0.09013337877718186
KATHHLVK	8	Unmodified	_KATHHLVK_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	HCT116MG_D190212_S1	1	467.28558349609375	2	467.285069	932.555585	0.12263	5.7304E-05	0.49439	0.00023102	0.61703	0.00028833	467.28521650802634	60.825	0.61535	60.825	60.646	61.262	0					14	11	2	0	0	0	0.87576	1	23483	23483		0.79363	0	1	27387000	+		15719	12615	9631	9682	15078	15078					0.08660903608188164
KATKNQLPPL	10	Unmodified	_KATKNQLPPL_					0	0	0			REV__ENSG00000100207|ENST00000677622|TCF20	REV__ENSG00000100207|ENST00000677622|TCF20	MULTI-MSMS	HCT116MG_D190212_S1	1	555.337890625	2	555.337498	1108.66044	0.36485	0.00020262	0.31152	0.000173	0.67637	0.00037561	555.3377269099482	60.577	0.25905	60.577	60.439	60.698	0					9	4	3	0	0	0	0.88823	1	23369	23369		1.4819	0	1	18140000	+		15720	11070	9632	9683	15079	15079					0.11045980294102264
KATRVPAGGG	10	Unmodified	_KATRVPAGGG_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	HCT116MG_D190212_S1	1	457.2639465332031	2	457.264333	912.514114	-0.11097	-5.0743E-05	-0.22126	-0.00010117	-0.33223	-0.00015191	457.2641784739311	42.29	0.31189	42.29	42.123	42.435	0					7	5	2	0	0	0	0.88195	1	15991	15991		2.9952	0.10602	1	4665200	+		15721	13673	9633	9684	15080	15080					0.05435722848869773
KAVARTAR	8	Unmodified	_KAVARTAR_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.K554Nfs*26|1|0.21|ENSG00000168264|chr1:234607239-234607239|T/-|frameshift_variant	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	HCT116MG_D190212_S3	3	872.5426635742188	1	872.54246	871.535184	0.71239	0.00062159	-0.54949	-0.00047945	0.1629	0.00014214	872.5418101898949	49.838	1.1995	49.523	49.08	50.28	-0.31525					55	22	4	0	0	0	0.8506	1	18677	18677		5.2307	0	1	186620000			15722	4994	9634	9685	15081	15081					0.0942773294835888
KAVKLREQEQ	10	Unmodified	_KAVKLREQEQ_					0	0	0		ENSG00000197976|ENST00000313871|AKAP17A	ENSG00000197976|ENST00000313871|AKAP17A	ENSG00000197976|ENST00000313871|AKAP17A	MSMS	HCT116MG_D190212_S2	2	614.8536987304688	2	614.854044	1227.69353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.14	1	14.813	14.313	15.313	-0.32684								0	0	0	0.95776	1	5009	5009		2.9952	0	1				15723	6192	9635	9686	15082	15082					0.08879562346146486
KAVRQVLH	8	Unmodified	_KAVRQVLH_					0	0	0		nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10	nc|ENSG00000086827|O43264-2|ZW10	nc|ENSG00000086827|O43264-2|ZW10	MULTI-MSMS	HCT116MG_D190212_S1	1	475.7985534667969	2	475.798343	949.582134	0.10064	4.7883E-05	0.12315	5.8596E-05	0.22379	0.00010648	475.79833425191623	60.774	1.1331	60.774	60.595	61.728	0					37	21	3	0	0	0	0.87576	1	23739	23739		0.79363	0	1	143810000			15724	1475	9636	9687	15083	15083					0.10532592499521343
KAVVKVIHLKP	11	Unmodified	_KAVVKVIHLKP_					0	0	0			REV__ENSG00000169504|ENST00000374379|CLIC4	REV__ENSG00000169504|ENST00000374379|CLIC4	MSMS	HCT116MG_D190212_S1	1	616.4141235351562	2	616.416083	1230.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.188	1	34.188	33.688	34.688	0								0	0	0	0.9598	1	12677	12677		1.1933	0	1		+		15725	13246	9637	9688	15084	15084					0.21143684904245674
KAYEQALQY	9	Unmodified	_KAYEQALQY_					0	0	0		nc|ENSG00000129514|P55317-2|FOXA1;ENSG00000129514|ENST00000250448|FOXA1	nc|ENSG00000129514|P55317-2|FOXA1	nc|ENSG00000129514|P55317-2|FOXA1	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2852783203125	2	557.282389	1112.55022	0.47782	0.00026628	-0.14157	-7.8894E-05	0.33625	0.00018739	557.282217059866	42.419	0.82995	42.349	41.911	42.741	-0.069984					46	15	5	0	0	0	0.43775	1	15966	15966		20.454	0	1	316300000			15726	3038	9638	9689	15085	15085					-0.001548647649542545
KAYKIRKD	8	Unmodified	_KAYKIRKD_					0	0	0			REV__POLR2B|p.E333D|1|0.29|ENSG00000047315|chr4:57005344-57005344|G/T|missense_variant	REV__POLR2B|p.E333D|1|0.29|ENSG00000047315|chr4:57005344-57005344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	511.3114013671875	2	511.311284	1020.60801	0.28563	0.00014605	-0.24086	-0.00012315	0.044775	2.2894E-05	511.3110906646674	60.691	0.35773	60.691	60.543	60.901	0					10	6	2	0	0	0	0.87576	1	23426	23426		0.79363	0	1	24150000	+		15727	17432	9639	9690	15086	15086					0.09853441951122477
KAYKKPRS	8	Unmodified	_KAYKKPRS_					0	0	0		CCDC50|p.A220Pfs*52|1|0.42|ENSG00000152492|chr3:191380870-191380870|A/-|frameshift_variant	CCDC50|p.A220Pfs*52|1|0.42|ENSG00000152492|chr3:191380870-191380870|A/-|frameshift_variant	CCDC50|p.A220Pfs*52|1|0.42|ENSG00000152492|chr3:191380870-191380870|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	489.298095703125	2	489.298176	976.581799	0.21326	0.00010435	-0.19331	-9.4584E-05	0.01995	9.7617E-06	489.2979597746701	60.774	0.35749	60.774	60.595	60.952	0					10	6	2	0	0	0	0.8672	1	23451	23451		2.3027	1.5091	1	35689000			15728	353	9640	9691	15087	15087					0.0925717277965532
KAYSGFLDI	9	Unmodified	_KAYSGFLDI_					0	0	0			REV__tr|U7T2R5|U7T2R5_FUSNUPolymerasenucleotidyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00391PE=4SV=1	REV__tr|U7T2R5|U7T2R5_FUSNUPolymerasenucleotidyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00391PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	507.0719909667969	2	507.26875	1012.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.927	1	50.927	50.427	51.427	0								0	0	0	0.76575	1	19444	19444		15.847	0.078963	1		+		15729	17931	9641	9692	15088	15088					0.017186516946708252
KCEPMDQDR	9	Unmodified	_KCEPMDQDR_					0	0	0		ENST00000429694.1_1:144604445-144614919:+|nuORF	ENST00000429694.1_1:144604445-144614919:+|nuORF	ENST00000429694.1_1:144604445-144614919:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	561.239990234375	2	561.239341	1120.46413	0.21724	0.00012192	0.94682	0.00053139	1.1641	0.00065331	561.7411686492907	34.226	0.25972	33.84	33.672	33.932	-0.38558					6	4	2	0	0	0	0.61923	1	12504	12504		10.074	0	1	3585600			15730	7840	9642	9693	15089	15089					-0.09128515933616654
KCFQPYALAP	10	Unmodified	_KCFQPYALAP_					0	0	0		ENST00000485192.1_1_6:138196977-138197082:+|nuORF	ENST00000485192.1_1_6:138196977-138197082:+|nuORF	ENST00000485192.1_1_6:138196977-138197082:+|nuORF	MSMS	HCT116MG_D190212_S1	1	379.86419677734375	3	379.86356	1136.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.068	1	17.068	16.568	17.568	0								0	0	0	0.94107	1	5786	5786		3.5871	1.1523	1				15731	8285	9643	9694	15090	15090					0.0060297360525964905
KCIIVYCKP	9	Unmodified	_KCIIVYCKP_					0	0	0			REV__nc|ENSG00000173612|Q5T6X5-3|GPRC6A	REV__nc|ENSG00000173612|Q5T6X5-3|GPRC6A	MULTI-MSMS	HCT116MG_D190212_S2	2	533.793212890625	2	533.793023	1065.57149	0.62701	0.00033469	-0.50481	-0.00026947	0.12219	6.5226E-05	533.7926975105058	27.197	0.26188	26.845	26.713	26.975	-0.35254					9	4	3	0	0	0	0.43775	1	9902	9902		20.454	6.5476	1	14381000	+		15732	13447	9644	9695	15091	15091					0.04133105738537779
KCRKKRRK	8	Unmodified	_KCRKKRRK_					0	0	0		ENST00000444067.2_1_1:78312795-78313113:+|nuORF	ENST00000444067.2_1_1:78312795-78313113:+|nuORF	ENST00000444067.2_1_1:78312795-78313113:+|nuORF	MSMS	HCT116MG_D190212_S1	1	368.25408935546875	3	368.241588	1101.70293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.847	1	56.847	56.347	57.347	0								0	0	0	0.8837	1	21863	21863		0.40072	0	1				15733	7941	9645	9696	15092	15092					0.15615096941314732
KCSCCHSC	8	Unmodified	_KCSCCHSC_					0	0	0		ENST00000409484.5_1_2:172378760-172398215:+|nuORF;ENST00000445146.1_1_2:172379775-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	870.2730102539062	1	870.272511	869.265234	0.65256	0.0005679	0.092427	8.0437E-05	0.74499	0.00064834	870.2723479654456	18.584	0.78159	18.584	18.35	19.131	0					19	14	2	0	0	0	0.86564	1	6451	6451		2.5775	1.8871	1	3018600			15734	7730	9646	9697	15093	15093					-0.17462771037685343
KCSCCHSC	8	Unmodified	_KCSCCHSC_					0	0	0		ENST00000409484.5_1_2:172378760-172398215:+|nuORF;ENST00000445146.1_1_2:172379775-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	870.2726440429688	1	870.272511	869.265234	0.67099	0.00058395	-0.34207	-0.00029769	0.32893	0.00028626	870.2721263265851	16.542	1.3528	16.627	16.445	17.798	0.085424					47	25	3	0	0	0	0.86564	3	5499	5499;5529;5735		2.5775	1.8871	1	10936000			15735	7730	9646	9697	15094;15095;15096	15094					-0.17462771037685343
KCSCCHSC	8	Unmodified	_KCSCCHSC_					0	0	0		ENST00000409484.5_1_2:172378760-172398215:+|nuORF;ENST00000445146.1_1_2:172379775-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	870.2730712890625	1	870.272511	869.265234	0.73405	0.00063882	-0.33376	-0.00029047	0.40028	0.00034836	870.272090519442	18.154	0.83306	18.231	17.789	18.622	0.076334					20	15	2	0	0	0	0.86564	1	6162	6162		2.5775	0	1	2393600			15736	7730	9646	9697	15097	15097					-0.17462771037685343
KCSCCHSC	8	Unmodified	_KCSCCHSC_					0	0	0		ENST00000409484.5_1_2:172378760-172398215:+|nuORF;ENST00000445146.1_1_2:172379775-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	870.2720336914062	1	870.272511	869.265234	0.78678	0.00068471	-0.28	-0.00024367	0.50678	0.00044104	870.2721428385718	18.808	0.57229	18.877	18.615	19.187	0.069159					13	10	2	0	0	0	0.87635	1	6414	6414		0.69038	0	1	2150300			15737	7730	9646	9697	15098	15098					-0.17462771037685343
KCSCCHSC	8	Unmodified	_KCSCCHSC_					0	0	0		ENST00000409484.5_1_2:172378760-172398215:+|nuORF;ENST00000445146.1_1_2:172379775-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	870.2724609375	1	870.272511	869.265234	0.69764	0.00060714	-0.43929	-0.0003823	0.25835	0.00022484	870.2721373115122	20.314	0.83284	20.362	20.155	20.988	0.048107					20	15	2	0	0	0	0.86564	1	7020	7020		2.5775	0	1	3957700			15738	7730	9646	9697	15099	15099					-0.17462771037685343
KCSCCHSC	8	Unmodified	_KCSCCHSC_					0	0	0		ENST00000409484.5_1_2:172378760-172398215:+|nuORF;ENST00000445146.1_1_2:172379775-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	870.2730102539062	1	870.272511	869.265234	0.2534	0.00022053	0.11581	0.00010079	0.36921	0.00032132	870.2723725795736	16.537	1.3195	16.371	16.221	17.54	-0.16664					53	25	3	0	0	0	0.86564	1	5410	5410		2.5775	0	1	7022400			15739	7730	9646	9697	15100	15100					-0.17462771037685343
KCSCCHSC	8	Unmodified	_KCSCCHSC_					0	0	0		ENST00000409484.5_1_2:172378760-172398215:+|nuORF;ENST00000445146.1_1_2:172379775-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	870.2725830078125	1	870.272511	869.265234	0.64011	0.00055707	-0.44425	-0.00038662	0.19587	0.00017046	870.2718859251206	18.179	0.56944	18.004	17.688	18.257	-0.17501					18	10	2	0	0	0	0.86564	1	6057	6057		2.5775	0	1	1695000			15740	7730	9646	9697	15101	15101					-0.17462771037685343
KCSCCHSC	8	Unmodified	_KCSCCHSC_					0	0	0		ENST00000409484.5_1_2:172378760-172398215:+|nuORF;ENST00000445146.1_1_2:172379775-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	870.2731323242188	1	870.272511	869.265234	0.70636	0.00061472	-0.28827	-0.00025088	0.41808	0.00036384	870.2721406529748	18.91	1.0398	18.725	18.247	19.287	-0.18488					26	19	2	0	0	0	0.86564	1	6293	6293		2.5775	0	1	1913000			15741	7730	9646	9697	15102	15102					-0.17462771037685343
KCSCCHSC	8	Unmodified	_KCSCCHSC_					0	0	0		ENST00000409484.5_1_2:172378760-172398215:+|nuORF;ENST00000445146.1_1_2:172379775-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	ENST00000409484.5_1_2:172378760-172398215:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	870.2724609375	1	870.272511	869.265234	0.78821	0.00068596	-0.23448	-0.00020406	0.55374	0.0004819	870.27210274611	20.305	0.88357	20.104	19.781	20.664	-0.20133					22	16	2	0	0	0	0.86564	1	6914	6914		2.5775	0	1	3793800			15742	7730	9646	9697	15103	15103					-0.17462771037685343
KCTKPCVDCY	10	Unmodified	_KCTKPCVDCY_					0	0	0			REV__ENST00000524031.1_1_6:109739377-109752485:-|nuORF	REV__ENST00000524031.1_1_6:109739377-109752485:-|nuORF	MSMS	HCT116MG_D190212_S3	3	580.4157104492188	2	580.250862	1158.48717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.98	1	14.055	13.555	14.555	0.074899								0	0	0	0.96453	1	4470	4470		1.4819	0.79152	1		+		15743	13835	9647	9698	15104	15104					-0.085732131405166
KDAAKLILT	9	Unmodified	_KDAAKLILT_					0	0	0			REV__OR52N5|p.I235Dfs*56|1|0.05|ENSG00000181009|chr11:5777933-5777934|-/TTTATCT|frameshift_variant	REV__OR52N5|p.I235Dfs*56|1|0.05|ENSG00000181009|chr11:5777933-5777934|-/TTTATCT|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	487.1861572265625	2	486.808042	971.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.066	1	21.1	20.6	21.6	0.034473								0	0	0	0.76603	1	7322	7322		14.838	2.3067	1		+		15744	17373	9648	9699	15105	15105					0.11459503999742537
KDAKNRKKKVK	11	Unmodified	_KDAKNRKKKVK_					0	0	0			REV__FER1L6|p.E14D|1|0.18|ENSG00000214814|chr8:123956040-123956040|G/T|missense_variant	REV__FER1L6|p.E14D|1|0.18|ENSG00000214814|chr8:123956040-123956040|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	671.934326171875	2	671.935702	1341.85685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.597	1	27.597	27.097	28.097	0								0	0	0	0.95196	1	10021	10021		5.2969	2.3016	1		+		15745	16817	9649	9700	15106	15106					0.1995978518780248
KDAVRRIRKHI	11	Unmodified	_KDAVRRIRKHI_					0	0	0			REV__PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant	REV__PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	696.3168334960938	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.224	1	41.848	41.348	42.348	-0.37565								0	0	0	0.95636	1	15511	15511		2.9952	1.6657	1		+		15746	14356	9650	9701	15107	15107					0.18353723139216527
KDAVRRIRKHI	11	Unmodified	_KDAVRRIRKHI_					0	0	0			REV__PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant	REV__PI4KA|p.E1291Kfs*2|1|0.43|ENSG00000241973|chr22:20734425-20734425|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	696.4378662109375	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.331	1	42.957	42.457	43.457	-0.37433								0	0	0	0.95731	1	15926	15926		2.4985	1.169	1		+		15747	14356	9650	9701	15108	15108					0.18353723139216527
KDDDDDDDADE	11	Unmodified	_KDDDDDDDADE_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	HCT116MG_D190212_S4	4	634.2068481445312	2	634.207666	1266.40078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.291	1	37.908	37.408	38.408	-0.38283								0	0	0	0.9598	1	14028	14028		1.1933	0	1				15748	2966	9651	9702	15109	15109					-0.22176551426832702
KDDFQRLTP	9	Unmodified	_KDDFQRLTP_					0	0	0		nc|ENSG00000157554|P11308-6|ERG;ENST00000468474.5_1_21:39772286-39947633:-|nuORF;ENST00000492833.5_1_21:39767491-39817511:-|nuORF;ERG|p.R263Gfs*35|1|0.38|ENSG00000157554|chr21:38392425-38392425|G/-|frameshift_variant;nc|ENSG00000157554|P11308-5|ERG;nc|ENSG00000157554|P11308-2|ERG;ERG|p.P411Rfs*25|2|0.39|ENSG00000157554|chr21:38383632-38383632|G/-|frameshift_variant;nc|ENSG00000157554|P11308-1|ERG;ERG|p.A454Cfs*19|2|0.22|ENSG00000157554|chr21:38383504-38383505|-/A|frameshift_variant;ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-3|ERG	nc|ENSG00000157554|P11308-6|ERG	nc|ENSG00000157554|P11308-6|ERG	MSMS	HCT116MG_D190212_S4	4	560.2930297851562	2	560.293288	1118.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.998	1	26.686	26.186	27.186	-0.3114								0	0	0	0.64498	1	9644	9644		21.747	3.6003	1				15749	8128	9652	9703	15110	15110					0.017479399836020093
KDDGQNFI	8	Unmodified	_KDDGQNFI_					0	0	0		XPO1|p.E315G|1|0.2|ENSG00000082898|chr2:61495558-61495558|T/C|missense_variant	XPO1|p.E315G|1|0.2|ENSG00000082898|chr2:61495558-61495558|T/C|missense_variant	XPO1|p.E315G|1|0.2|ENSG00000082898|chr2:61495558-61495558|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	469.2519226074219	2	468.724707	935.43486	0.13501	6.3282E-05	0.64235	0.00030109	0.77736	0.00036437	468.72456059592895	42.926	0.20823	42.926	42.795	43.003	0					5	3	2	0	0	0	0.32122	1	16197	16197		7.9102	0	1	2846800			15750	18700	9653	9704	15111	15111					-0.03543968895951366
KDDIHEQLEH	10	Unmodified	_KDDIHEQLEH_					0	0	0			REV__ENSG00000119965|ENST00000481909|C10orf88	REV__ENSG00000119965|ENST00000481909|C10orf88	MULTI-SECPEP	HCT116MG_D190212_S4	4	632.8025512695312	2	632.301841	1262.58913	0.34156	0.00021597	0.39177	0.00024771	0.73333	0.00046368	632.3019048657383	30.887	0.66418	30.522	30.21	30.874	-0.36416					30	17	3	0	0	0	0.3093	1	11068	11068		2.9952	2.9952	1	7603200	+		15751	11679	9654	9705	15112	15112					-0.03166184201222677
KDDLARLLRDY	11	Unmodified	_KDDLARLLRDY_					0	0	0		ENSG00000186442|ENST00000417996|KRT3;CON__P12035;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546	ENSG00000186442|ENST00000417996|KRT3	ENSG00000186442|ENST00000417996|KRT3	MSMS	HCT116MG_D190212_S2	2	689.3782348632812	2	689.377883	1376.74121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.841	1	15.507	15.007	16.007	-0.33451								0	0	0	0.94851	1	5292	5292		7.1017	0	1			+	15752	560	9655	9706	15113	15113					0.06791216546321266
KDDLTIQY	8	Unmodified	_KDDLTIQY_					0	0	0		tr|U7SZH7|U7SZH7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00757PE=4SV=1	tr|U7SZH7|U7SZH7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00757PE=4SV=1	tr|U7SZH7|U7SZH7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00757PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	498.2562561035156	2	498.25584	994.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.866	1	34.708	34.208	35.208	-0.15834								0	0	0	0.81076	1	12986	12986		21.747	0	1				15753	18529	9656	9707	15114	15114					-0.0003424254762194323
KDDNLEHYKNS	11	Unmodified	_KDDNLEHYKNS_					0	0	0		ENST00000480044.5_1_2:163027491-163031488:-|nuORF;nc|ENSG00000078098|Q12884-2|FAP;ENST00000422436.5_1_2:163027491-163054158:-|nuORF;ENSG00000078098|ENST00000188790|FAP	ENST00000480044.5_1_2:163027491-163031488:-|nuORF	ENST00000480044.5_1_2:163027491-163031488:-|nuORF	MSMS	HCT116MG_D190212_S4	4	681.818359375	2	681.817855	1361.62116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.839	1	18.658	18.158	19.158	-0.18052								0	0	0	0.94851	1	6350	6350		7.1017	0	1				15754	1359	9657	9708	15115	15115					-0.045188165181116347
KDDQLTLTP	9	Unmodified	_KDDQLTLTP_					0	0	0		ENSG00000005100|ENST00000225296|DHX33;ENST00000575153.5_1_17:5347527-5364435:-|nuORF;nc|ENSG00000005100|Q9H6R0-2|DHX33	ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.7274780273438	2	515.774396	1029.53424	0.19992	0.00010311	0.11255	5.8052E-05	0.31247	0.00016116	515.7743724694933	34.054	0.62334	33.879	33.5	34.124	-0.17511					21	11	3	0	0	0	0.19936	1	12646	12646		27.629	0	1	20988000			15755	809	9658	9709	15116	15116					0.02065428998139396
KDDYDGSP	8	Unmodified	_KDDYDGSP_					0	0	0		ENST00000342081.7_1_4:74477471-74486347:-|nuORF	ENST00000342081.7_1_4:74477471-74486347:-|nuORF	ENST00000342081.7_1_4:74477471-74486347:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	896.3623657226562	1	896.363218	895.355941	0.68462	0.00061367	-1.2214	-0.0010948	-0.53676	-0.00048114	896.3616975884997	26.859	0.31156	26.548	26.327	26.639	-0.3114					8	5	2	0	0	0	0.82475	1	9582	9582		8.5933	0.68312	1	1752100			15756	7225	9659	9710	15117	15117					-0.09592240920903805
KDEAHQAQKDP	11	Unmodified	_KDEAHQAQKDP_					0	0	0		nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;PPP2R5C|p.H504Qfs*14|1|0.07|ENSG00000078304|chr14:101925207-101925208|-/A|frameshift_variant;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000554147.1_1_14:102384113-102391606:+|nuORF;ENST00000557071.1_3_14:102380750-102391606:+|nuORF	nc|ENSG00000078304|Q13362|PPP2R5C	nc|ENSG00000078304|Q13362|PPP2R5C	MULTI-SECPEP	HCT116MG_D190212_S4	4	634.2994384765625	2	633.807291	1265.60003	0.34396	0.00021801	-0.09916	-6.2849E-05	0.2448	0.00015516	633.8074200137178	22.515	1.3036	22.285	21.777	23.081	-0.23044					50	24	3	0	0	0	0.36231	1	8134	8134		2.7352	0	1	7635300			15757	1363	9660	9711	15118	15118					-0.02214781826955914
KDECCFDANQ	10	Unmodified	_KDECCFDANQ_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	392.1838073730469	3	391.483079	1171.42741	0.048823	1.9113E-05	-0.45093	-0.00017653	-0.4021	-0.00015742	391.48293998413425	25.461	0.20784	25.355	25.256	25.464	-0.10618					5	3	2	0	0	0	0.31113	1	9063	9063		2.8433	1.101	1	2430300			15758	3510	9661	9712	15119	15119					-0.1514481255019291
KDECCFDANQ	10	Unmodified	_KDECCFDANQ_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	391.483079	1171.42741	0.035091	1.3738E-05	0.081188	3.1784E-05	0.11628	4.5521E-05	391.4830869397595	25.69	0.31113	25.321	25.187	25.498	-0.36914	-0.017054	0.00038663	NaN	2.8433	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19331000			15759	3510	9661	9712							-0.1514481255019291
KDECPDQWLPD	11	Unmodified	_KDECPDQWLPD_					0	0	0			REV__nc|ENSG00000070614|P52848-3|NDST1	REV__nc|ENSG00000070614|P52848-3|NDST1	MSMS	HCT116MG_D190212_S1	1	673.2879028320312	2	673.290085	1344.56562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.865	1	30.865	30.365	31.365	0								0	0	0	0.9465	1	11336	11336		8.1555	1.9497	1		+		15760	10757	9662	9713	15120	15120					-0.09288366030068573
KDEDDDDNYY	10	Unmodified	_KDEDDDDNYY_					0	0	0		REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant;nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant	REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	646.2343139648438	2	646.233487	1290.45242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.083	1	32.083	31.583	32.583	0								0	0	0	0.95507	1	11827	11827		3.5965	1.9439	1				15761	867	9663	9714	15121	15121					-0.1811876294227659
KDEDDDDNYYI	11	Unmodified	_KDEDDDDNYYI_					0	0	0		REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant;nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant	REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	702.7742919921875	2	702.775519	1403.53648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.915	1	29.915	29.415	30.415	0								0	0	0	0.95113	1	10952	10952		5.7319	1.7875	1				15762	867	9664	9715	15122	15122					-0.14914231845364156
KDEFEEAHP	9	Unmodified	_KDEFEEAHP_					0	0	0			REV__ENST00000472809.5_1_2:62934317-62998533:+|nuORF	REV__ENST00000472809.5_1_2:62934317-62998533:+|nuORF	MSMS	HCT116MG_D190212_S3	3	551.2461547851562	2	551.246003	1100.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.852	1	27.664	27.164	28.164	-0.18847								0	0	0	0.768	1	10055	10055		7.9102	0	1		+		15763	10443	9665	9716	15123	15123					-0.06876618558385417
KDELHIVEA	9	Unmodified	_KDELHIVEA_					0	0	0		ENST00000513394.1_1_8:57014234-57014760:-|nuORF;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	527.2830200195312	2	527.282389	1052.55022	0.48099	0.00025362	0.37773	0.00019917	0.85872	0.00045279	527.2825781186767	32.846	0.24244	32.846	32.742	32.985	0					7	4	2	0	0	0	0.037825	1	12165	12165		80.676	24.499	1	17305000			15764	5625	9666	9717	15124	15124					0.026051352350577872
KDELHIVEA	9	Unmodified	_KDELHIVEA_					0	0	0		ENST00000513394.1_1_8:57014234-57014760:-|nuORF;NPM1|p.A160Tfs*3|1|0.11|ENSG00000181163|chr5:171392931-171392932|-/ACCA|frameshift_variant;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000513394.1_1_8:57014234-57014760:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2825317382812	2	527.282389	1052.55022	0.6991	0.00036862	-0.3811	-0.00020095	0.318	0.00016768	527.2820714244724	33.133	0.2084	32.921	32.792	33	-0.21135					8	3	3	0	0	0	0.016412	1	12294	12294		100.09	28.168	1	58763000			15765	5625	9666	9717	15125	15125					0.026051352350577872
KDELSRATP	9	Unmodified	_KDELSRATP_					0	0	0			REV__ENST00000480597.5_1_9:139648952-139651016:-|nuORF	REV__ENST00000480597.5_1_9:139648952-139651016:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	508.3109130859375	2	508.772188	1015.52982	0.32475	0.00016522	0.91122	0.00046361	1.236	0.00062883	508.77287498901444	21.164	0.2081	20.781	20.651	20.859	-0.38288					5	3	2	0	0	0	0.1389	1	7463	7463		45.7	9.1934	1	9847700	+		15766	15949	9667	9718	15126	15126					0.02267964575219139
KDEPELSLQS	10	Unmodified	_KDEPELSLQS_					0	0	0			REV__ENST00000568697.1_1_16:57832362-57841656:+|nuORF	REV__ENST00000568697.1_1_16:57832362-57841656:+|nuORF	MSMS	HCT116MG_D190212_S3	3	573.28857421875	2	573.287868	1144.56118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.021	1	22.991	22.491	23.491	-0.030388								0	0	0	0.90892	1	8107	8107		13.906	0	1		+		15767	16560	9668	9719	15127	15127					-0.00531507181312918
KDEPREVYQGS	11	Unmodified	_KDEPREVYQGS_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-MSMS	HCT116MG_D190212_S3	3	654.3160400390625	2	654.314948	1306.61534	0.43597	0.00028526	0.14714	9.6273E-05	0.5831	0.00038153	654.3150663592469	17.142	1.0927	17.227	16.704	17.797	0.084467					41	20	3	0	0	0	0.72218	1	5671	5671		13.615	0	1	5247300			15768	1844	9669	9720	15128	15128					-0.02569915029744152
KDEPREVYQGS	11	Unmodified	_KDEPREVYQGS_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	654.314948	1306.61534	0.43597	0.00028526	0.14714	9.6273E-05	0.5831	0.00038153	654.3150663592469	17.142	1.0927	17.227	16.704	17.797	0.084467	0.042335	-7.8307E-05	NaN	13.615	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5247300			15769	1844	9669	9720							-0.02569915029744152
KDEQISGTVSS	11	Unmodified	_KDEQISGTVSS_					0	0	0		nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;ENST00000534304.5_1_2:96525807-96601268:-|nuORF;nc|ENSG00000174501|Q5JPF3-2|ANKRD36C;ANKRD36C|p.F1404Lfs*4|1|0.33|ENSG00000174501|chr2:95856049-95856049|A/-|frameshift_variant;nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	MULTI-SECPEP	HCT116MG_D190212_S2	2	575.2273559570312	2	575.78295	1149.55135	0.2855	0.00016439	0.45804	0.00026373	0.74354	0.00042812	575.7830264526951	20.271	0.2088	19.891	19.761	19.969	-0.37949					5	3	2	0	0	0	0.33772	1	7046	7046		13.615	0	1	3175800			15770	140	9670	9721	15129	15129					-0.017446951866986637
KDETHIIQ	8	Unmodified	_KDETHIIQ_					0	0	0			REV__ZNF658|p.R373I|1|0.33|ENSG00000274349|chr9:66918684-66918684|G/T|missense_variant	REV__ZNF658|p.R373I|1|0.33|ENSG00000274349|chr9:66918684-66918684|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	492.2617492675781	2	492.261456	982.50836	-0.40721	-0.00020045	0.57952	0.00028528	0.17231	8.4824E-05	492.2619187996674	16.644	0.25255	16.478	16.303	16.556	-0.16664					6	4	2	0	0	0	0.72197	1	5490	5490		20.454	0	1	804790	+		15771	18086	9671	9722	15130	15130					0.01640579546540266
KDEVKAASPG	10	Unmodified	_KDEVKAASPG_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MSMS	HCT116MG_D190212_S3	3	501.26654052734375	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.272	1	23.233	22.733	23.733	-0.03968								0	0	0	0.83705	1	8208	8208		24.021	1.2843	1				15772	9475	9672	9723	15131	15131					0.01868562200957058
KDEWDRQRERE	11	Unmodified	_KDEWDRQRERE_					0	0	0			REV__ZC3H13|p.R1007Tfs*2|1|0.37|ENSG00000123200|chr13:45969525-45969526|-/T|frameshift_variant	REV__ZC3H13|p.R1007Tfs*2|1|0.37|ENSG00000123200|chr13:45969525-45969526|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	773.86865234375	2	773.871485	1545.72842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.221	1	36.221	35.721	36.721	0								0	0	0	0.95636	1	13499	13499		2.9952	0	1		+		15773	11759	9673	9724	15132	15132					-0.02261846583883198
KDEWNCQFCH	10	Unmodified	_KDEWNCQFCH_					0	0	0		TRIM42|p.R48W|2|0.2|ENSG00000155890|chr3:140678371-140678371|C/T|missense_variant	TRIM42|p.R48W|2|0.2|ENSG00000155890|chr3:140678371-140678371|C/T|missense_variant	TRIM42|p.R48W|2|0.2|ENSG00000155890|chr3:140678371-140678371|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	655.2571411132812	2	655.258065	1308.50158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.82	1	46.82	46.32	47.32	0								0	0	0	0.95507	1	17774	17774		3.5965	0	1				15774	18663	9674	9725	15133	15133					-0.1403342466801405
KDEWRIFNEYR	11	Unmodified	_KDEWRIFNEYR_					0	0	0			REV__ENSG00000139083|ENST00000396373|ETV6	REV__ENSG00000139083|ENST00000396373|ETV6	MSMS	HCT116MG_D190212_S4	4	778.385009765625	2	778.386239	1554.75793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.22	1	18.045	17.545	18.545	-0.17501								0	0	0	0.95686	1	6100	6100		2.7352	1.4057	1		+		15775	12247	9675	9726	15134	15134					0.002737174322874125
KDFDHVVLL	9	Unmodified	_KDFDHVVLL_					0	0	0		ADAM7|p.L594Yfs*29|2|0.18|ENSG00000069206|chr8:24493162-24493162|T/-|frameshift_variant;ENSG00000069206|ENST00000175238|ADAM7	ADAM7|p.L594Yfs*29|2|0.18|ENSG00000069206|chr8:24493162-24493162|T/-|frameshift_variant	ADAM7|p.L594Yfs*29|2|0.18|ENSG00000069206|chr8:24493162-24493162|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	543.3009643554688	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.638	1	34.638	34.138	35.138	0								0	0	0	0.76575	1	12858	12858		15.847	0	1				15776	40	9676	9727	15135	15135					0.05278315994382865
KDFEERMRQFR	11	Unmodified	_KDFEERMRQFR_					0	0	0			REV__ENST00000567110.1_1_16:56481699-56485159:-|nuORF	REV__ENST00000567110.1_1_16:56481699-56485159:-|nuORF	MSMS	HCT116MG_D190212_S4	4	771.384033203125	2	771.385716	1540.75688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.461	1	25.181	24.681	25.681	-0.27958								0	0	0	0.95686	1	9024	9024		2.7352	1.4057	1		+		15777	13133	9677	9728	15136	15136					0.00813179791703078
KDFISRIWLTY	11	Unmodified	_KDFISRIWLTY_					0	0	0		ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	MSMS	HCT116MG_D190212_S1	1	721.5619506835938	2	721.395544	1440.77654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.307	1	45.307	44.807	45.807	0								0	0	0	0.94851	1	17163	17163		7.1017	2.2047	1				15778	2900	9678	9729	15137	15137					0.07377879074124394
KDFKPPNQQM	10	Unmodified	_KDFKPPNQQM_					0	0	0			REV__MYH7|p.I1207Tfs*26|1|0.04|ENSG00000092054|chr14:23419951-23419952|-/TGTAGTG|frameshift_variant	REV__MYH7|p.I1207Tfs*26|1|0.04|ENSG00000092054|chr14:23419951-23419952|-/TGTAGTG|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	616.8067626953125	2	616.808248	1231.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.209	1	45.209	44.709	45.709	0								0	0	0	0.93202	1	17123	17123		8.7454	2.0222	1		+		15779	11011	9679	9730	15138	15138					-0.00459444342709503
KDFLANMRFLH	11	Unmodified	_KDFLANMRFLH_					0	0	0		nc|ENSG00000121417|Q13398-5|ZNF211;nc|ENSG00000121417|Q13398-6|ZNF211;nc|ENSG00000121417|Q13398-2|ZNF211;nc|ENSG00000121417|Q13398|ZNF211;nc|ENSG00000121417|Q13398-4|ZNF211;nc|ENSG00000121417|Q13398-3|ZNF211;ENSG00000121417|ENST00000240731|ZNF211;nc|ENSG00000121417|Q13398-8|ZNF211	nc|ENSG00000121417|Q13398-5|ZNF211	nc|ENSG00000121417|Q13398-5|ZNF211	MSMS	HCT116MG_D190212_S4	4	696.3648071289062	2	696.366264	1390.71798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.565	1	37.181	36.681	37.681	-0.3839								0	0	0	0.95731	1	13790	13790		2.4985	0	1				15780	2732	9680	9731	15139	15139					0.03824499227994238
KDFLWRFFLDL	11	Unmodified	_KDFLWRFFLDL_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MSMS	HCT116MG_D190212_S3	3	500.6053161621094	3	500.606367	1498.79727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.795	1	16.879	16.379	17.379	0.084467								0	0	0	0.95976	1	5599	5599		1.2148	0.10508	1		+		15781	12166	9681	9732	15140	15140					0.06782469453787598
KDFQELLLFLQ	11	Unmodified	_KDFQELLLFLQ_					0	0	0		nc|ENSG00000054611|Q8WUA7-2|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;ENSG00000054611|ENST00000337137|TBC1D22A	nc|ENSG00000054611|Q8WUA7-2|TBC1D22A	nc|ENSG00000054611|Q8WUA7-2|TBC1D22A	MSMS	HCT116MG_D190212_S4	4	697.3876342773438	2	697.389928	1392.7653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.676	1	36.292	35.792	36.792	-0.38486								0	0	0	0.95343	1	13431	13431		4.5289	0.93237	1				15782	1072	9682	9733	15141	15141					0.08463056980008332
KDFYADVWYLR	11	Unmodified	_KDFYADVWYLR_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	HCT116MG_D190212_S4	4	738.8719482421875	2	738.369527	1474.7245	0.85895	0.00063423	-0.84094	-0.00062093	0.018011	1.3299E-05	738.3686734890083	21.255	0.20774	21.045	20.915	21.123	-0.20959					6	3	2	0	0	0	0.72419	1	7339	7339		12.873	2.722	1	3499800	+		15783	10879	9683	9734	15142	15142					0.00612715660372487
KDFYADVWYLR	11	Unmodified	_KDFYADVWYLR_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	738.369527	1474.7245	0.88087	0.00065041	0.040631	3.0001E-05	0.9215	0.00068041	738.3696961085622	21.093	0.2161	21.093	20.956	21.173	0	-0.0517	0.00081373	NaN	12.873	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8733900	+		15784	10879	9683	9734							0.00612715660372487
KDFYADVWYLR	11	Unmodified	_KDFYADVWYLR_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	738.369527	1474.7245	0.88816	0.00065579	-0.86568	-0.00063919	0.022486	1.6603E-05	738.3686916297264	21.682	0.20761	21.297	21.167	21.375	-0.38503	0.15173	-0.00052465	NaN	12.873	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8336300	+		15785	10879	9683	9734							0.00612715660372487
KDFYLYYFLMQ	11	Unmodified	_KDFYLYYFLMQ_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S4	4	765.8709106445312	2	765.870514	1529.72647	0.89559	0.00068591	-3.0392	-0.0023276	-2.1436	-0.0016417	765.8687629539714	27.886	0.4059	27.564	27.2	27.606	-0.32157					9	7	2	0	0	0	0.74191	1	9940	9940		2.7352	1.2533	1	2272000			15786	1532	9684	9735	15143	15143					-0.01719991646041308
KDFYPFGSNVQ	11	Unmodified	_KDFYPFGSNVQ_					0	0	0		ADGB|p.S76Afs*20|1|0.49|ENSG00000118492|chr6:146635522-146635522|A/-|frameshift_variant;ADGB|p.K486Rfs*5|1|0.4|ENSG00000118492|chr6:146691255-146691255|A/-|frameshift_variant;ADGB|p.E487Gfs*7|1|0.34|ENSG00000118492|chr6:146691254-146691255|-/A|frameshift_variant;ADGB|p.K1379Rfs*12|1|0.29|ENSG00000118492|chr6:146784714-146784714|A/-|frameshift_variant;ENSG00000118492|ENST00000397944|ADGB	ADGB|p.S76Afs*20|1|0.49|ENSG00000118492|chr6:146635522-146635522|A/-|frameshift_variant	ADGB|p.S76Afs*20|1|0.49|ENSG00000118492|chr6:146635522-146635522|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	651.3099975585938	2	651.311677	1300.6088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.389	1	25.389	24.889	25.889	0								0	0	0	0.91979	1	9130	9130		17.443	3.0373	1				15787	58	9685	9736	15144	15144					-0.029478081904699138
KDGALHGP	8	Unmodified	_KDGALHGP_					0	0	0			REV__ENSG00000205922|ENST00000382349|ONECUT3	REV__ENSG00000205922|ENST00000382349|ONECUT3	MSMS	HCT116MG_D190212_S3	3	397.7115478515625	2	397.711402	793.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.273	1	25.167	24.667	25.667	-0.10618								0	0	0	0.85589	1	9015	9015		18.135	0	1		+		15788	14237	9686	9737	15145	15145					0.003283870033897074
KDGGAAKNMTS	11	Oxidation (M)	_KDGGAAKNM(Oxidation (M))TS_		KDGGAAKNM(1)TS		KDGGAAKNM(44)TS	0	0	1			REV__RXFP3|p.A10S|1|0.43|ENSG00000182631|chr5:33936768-33936768|G/T|missense_variant	REV__RXFP3|p.A10S|1|0.43|ENSG00000182631|chr5:33936768-33936768|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	548.2569580078125	2	548.258588	1094.50262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.509	1	17.591	17.091	18.091	0.081358								0	0	0	0.57072	1	5887	5887		44.392	7.8857	1		+		15789	17485	9687	9738	15146	15146		167			-0.04084887027465811
KDGHRECVIFC	11	Unmodified	_KDGHRECVIFC_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-MSMS	HCT116MG_D190212_S4	4	653.804931640625	2	653.805182	1305.59581	0.59327	0.00038788	0.44584	0.00029149	1.0391	0.00067938	654.3075043593276	22.162	0.67479	21.934	21.313	21.988	-0.22777					16	12	2	0	0	0	0.72218	1	7695	7695		13.615	0	1	2293700			15790	2124	9688	9739	15147	15147					-0.04476285845885286
KDGKDPNQFT	10	Unmodified	_KDGKDPNQFT_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1;TGIF1|p.G352Lfs*32|1|0.87|ENSG00000177426|chr18:3457784-3457785|-/TC|frameshift_variant;TGIF1|p.N260Rfs*10|1|0.36|ENSG00000177426|chr18:3457501-3457502|-/GGGCATCAAAA|frameshift_variant;TGIF1|p.S291Vfs*61|1|0.52|ENSG00000177426|chr18:3457598-3457599|-/CCGT|frameshift_variant;ENSG00000118707|ENST00000373872|TGIF2	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MULTI-MSMS	HCT116MG_D190212_S4	4	575.2802734375	2	575.280377	1148.5462	0.48328	0.00027802	0.32749	0.0001884	0.81077	0.00046642	575.2803311360592	25.907	2.2359	25.617	24.372	26.608	-0.29023					116	42	4	0	0	0	0.73913	2	8803	8803;8851		17.113	7.7298	1	45755000			15791	5456	9689	9740	15148;15149	15148					-0.022129542586981188
KDGLEKLLNDY	11	Unmodified	_KDGLEKLLNDY_					0	0	0			REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	REV__tr|U7SXD8|U7SXD8_FUSNUHistidine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hisSPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	654.3471069335938	2	654.345717	1306.67688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.821	1	37.821	37.321	38.321	0								0	0	0	0.95273	1	14142	14142		4.897	0.56777	1		+		15792	17863	9690	9741	15150	15150					0.03581016669545534
KDGLGEYTCT	10	Unmodified	_KDGLGEYTCT_					0	0	0		F10|p.T211Hfs*9|1|0.13|ENSG00000126218|chr13:113143974-113143975|-/C|frameshift_variant;ENST00000477269.5_1_13:113777169-113798523:+|nuORF;ENSG00000126218|ENST00000375559|F10	F10|p.T211Hfs*9|1|0.13|ENSG00000126218|chr13:113143974-113143975|-/C|frameshift_variant	F10|p.T211Hfs*9|1|0.13|ENSG00000126218|chr13:113143974-113143975|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	544.8012084960938	2	543.742239	1085.46993	0.42575	0.0002315	-0.089785	-4.882E-05	0.33596	0.00018268	543.7421454025637	26.271	0.31225	25.97	25.817	26.13	-0.30087					12	5	3	0	0	0	0.80632	1	9315	9315		11.495	0.67078	1	8329900			15793	2928	9691	9742	15151	15151					-0.06939094150311576
KDGLIKTKEK	10	Unmodified	_KDGLIKTKEK_					0	0	0			REV__ENST00000460337.5_1_1:213180435-213186753:-|nuORF	REV__ENST00000460337.5_1_1:213180435-213186753:-|nuORF	MSMS	HCT116MG_D190212_S4	4	580.774658203125	2	580.355888	1158.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.445	1	33.063	32.563	33.563	-0.38223								0	0	0	0.94925	1	12176	12176		4.897	1.9018	1		+		15794	13490	9692	9743	15152	15152					0.12422232119979526
KDGPFGSRD	9	Unmodified	_KDGPFGSRD_					0	0	0		ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant;ATG2A|p.G1888Afs*2|2|0.3|ENSG00000110046|chr11:64895127-64895127|C/-|frameshift_variant;ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant	ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	489.73541259765625	2	489.735606	977.456658	0.030407	1.4891E-05	0.31496	0.00015425	0.34537	0.00016914	489.73558591331397	18.154	0.3121	18.231	18.049	18.361	0.076334					7	5	2	0	0	0	0.17622	1	6139	6139		43.772	5.5968	1	2538400			15795	211	9693	9744	15153	15153					-0.03297164147386411
KDGPPGPPGSN	11	Unmodified	_KDGPPGPPGSN_					0	0	0		CON__P04258	CON__P04258	CON__P04258	MULTI-MSMS	HCT116MG_D190212_S4	4	511.74871826171875	2	511.748713	1021.48287	0.13925	7.126E-05	0.26565	0.00013594	0.40489	0.0002072	511.74873502003857	18.776	0.83182	18.595	18.199	19.031	-0.18051					18	15	2	0	0	0	0.55672	1	6313	6313		40.239	0.28951	1	5142000		+	15796	557	9694	9745	15154	15154					-0.02700894975907886
KDGPTASMFAP	11	Unmodified	_KDGPTASMFAP_					0	0	0			REV__nc|ENSG00000211599|P06315|IGKV5-2	REV__nc|ENSG00000211599|P06315|IGKV5-2	MSMS	HCT116MG_D190212_S4	4	561.2880249023438	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.509	1	28.178	27.678	28.678	-0.33138								0	0	0	0.93295	1	10255	10255		15.248	3.7538	1		+		15797	17277	9695	9746	15155	15155					-0.033145110167197345
KDGQRYEE	8	Unmodified	_KDGQRYEE_					0	0	0		ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-MSMS	HCT116MG_D190212_S4	4	512.7385864257812	2	512.738345	1023.46214	-0.38841	-0.00019915	0.40778	0.00020909	0.01937	9.932E-06	512.7386225522058	16.373	1.5668	16.21	15.407	16.974	-0.16364					52	30	3	0	0	0	0.67912	1	5214	5214		25.399	2.663	1	2606700			15798	3180	9696	9747	15156	15156					-0.04865485355583132
KDGQWFTD	8	Unmodified	_KDGQWFTD_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.F423Lfs*6|1|0.21|ENSG00000037474|chr5:6609880-6609880|A/-|frameshift_variant;nc|ENSG00000037474|Q08J23-3|NSUN2;NSUN2|p.Y537Mfs*10|1|0.1|ENSG00000037474|chr5:6605401-6605401|A/-|frameshift_variant	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-SECPEP	HCT116MG_D190212_S2	2	499.2508239746094	2	498.724707	995.43486	0.23314	0.00011627	-0.70862	-0.0003534	-0.47548	-0.00023713	498.7245669570939	19.023	0.20898	18.653	18.523	18.732	-0.3695					5	3	2	0	0	0	0.28869	1	6570	6570		12.532	1.7076	1	2097800			15799	990	9697	9748	15157	15157					-0.06303968895952039
KDGREWMGYD	10	Unmodified	_KDGREWMGYD_					0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	MSMS	HCT116MG_D190212_S4	4	628.9879760742188	2	628.771862	1255.52917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.091	1	34.705	34.205	35.205	-0.38606								0	0	0	0.91638	1	12839	12839		12.241	2.1667	1		+		15800	10598	9698	9749	15158	15158					-0.08837198136120605
KDGRVVRG	8	Unmodified	_KDGRVVRG_					0	0	0		ATG2B|p.I1921V|1|0.09|ENSG00000066739|chr14:96290531-96290531|T/C|missense_variant	ATG2B|p.I1921V|1|0.09|ENSG00000066739|chr14:96290531-96290531|T/C|missense_variant	ATG2B|p.I1921V|1|0.09|ENSG00000066739|chr14:96290531-96290531|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	886.5227661132812	1	886.521725	885.514448	0.60913	0.00054001	0.31018	0.00027498	0.9193	0.00081498	886.5220130203969	42.847	0.98566	42.847	42.486	43.472	0					33	18	2	0	0	0	0.83066	1	16247	16247		7.9102	0	1	12657000			15801	214	9699	9750	15159	15159					0.06711142568701689
KDGVKYEFIE	10	Unmodified	_KDGVKYEFIE_					0	0	0			REV__tr|U7SWI6|U7SWI6_FUSNUSulfitereductase,subunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01056PE=4SV=1	REV__tr|U7SWI6|U7SWI6_FUSNUSulfitereductase,subunitBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01056PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	614.3148193359375	2	614.316428	1226.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.735	1	23.487	22.987	23.987	-0.24775								0	0	0	0.82952	1	8326	8326		24.991	1.2012	1		+		15802	17851	9700	9751	15160	15160					0.01405960095030423
KDGYFGDGSID	11	Unmodified	_KDGYFGDGSID_					0	0	0			REV__ENST00000381638.6_1_17:4009031-4013033:-|nuORF	REV__ENST00000381638.6_1_17:4009031-4013033:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	586.7902221679688	2	587.256568	1172.49858	0.62879	0.00036926	0.082747	4.8594E-05	0.71154	0.00041786	587.2564756463236	22.203	0.15637	21.818	21.687	21.843	-0.3852					4	2	2	0	0	0	0.36272	1	7805	7805		4.897	0	1	7917200	+		15803	15284	9701	9752	15161	15161					-0.08076653249509036
KDGYYFKNC	9	Unmodified	_KDGYYFKNC_					0	0	0		tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	569.257080078125	2	569.255317	1136.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.581	1	27.259	26.759	27.759	-0.32157								0	0	0	0.76575	1	9880	9880		15.847	1.0089	1				15804	18364	9702	9753	15162	15162					-0.06670780188164827
KDHENLTY	8	Unmodified	_KDHENLTY_					0	0	0			REV__FAM83B|p.S772Lfs*4|1|0.26|ENSG00000168143|chr6:54941281-54941281|G/-|frameshift_variant	REV__FAM83B|p.S772Lfs*4|1|0.26|ENSG00000168143|chr6:54941281-54941281|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	509.7561950683594	2	510.243264	1018.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.867	1	29.511	29.011	30.011	-0.35572								0	0	0	0.8837	1	10804	10804		13.906	0.39817	1		+		15805	13187	9703	9754	15163	15163					-0.036522973501973865
KDHFYDKP	8	Unmodified	_KDHFYDKP_					0	0	0			REV__CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant	REV__CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	524.7584228515625	2	525.256174	1048.49779	0.39414	0.00020703	3.7112	0.0019494	4.1054	0.0021564	525.259214099328	18.18	0.2608	18.18	18.089	18.35	0					5	4	2	0	0	0	0.31855	1	6253	6253		2.0598	0	1	2808500	+		15806	10216	9704	9755	15164	15164					-0.024514031078979315
KDHHLHGPEH	10	Unmodified	_KDHHLHGPEH_					0	0	0			REV__GRIA3|p.S522Ffs*33|1|0.3|ENSG00000125675|chrX:123417460-123417461|-/T|frameshift_variant	REV__GRIA3|p.S522Ffs*33|1|0.3|ENSG00000125675|chrX:123417460-123417461|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	603.7892456054688	2	603.791778	1205.569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.862	1	17.505	17.005	18.005	-0.35647								0	0	0	0.94339	1	6105	6105		6.2058	0.9089	1		+		15807	16858	9705	9756	15165	15165					-0.02555890350527079
KDHHLHGPEH	10	Unmodified	_KDHHLHGPEH_					0	0	0			REV__GRIA3|p.S522Ffs*33|1|0.3|ENSG00000125675|chrX:123417460-123417461|-/T|frameshift_variant	REV__GRIA3|p.S522Ffs*33|1|0.3|ENSG00000125675|chrX:123417460-123417461|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	603.790771484375	2	603.791778	1205.569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.767	1	17.849	17.349	18.349	0.081358								0	0	0	0.76907	1	5991	5991		32.786	10.049	1		+		15808	16858	9705	9756	15166	15166					-0.02555890350527079
KDHHLHGPEH	10	Unmodified	_KDHHLHGPEH_					0	0	0			REV__GRIA3|p.S522Ffs*33|1|0.3|ENSG00000125675|chrX:123417460-123417461|-/T|frameshift_variant	REV__GRIA3|p.S522Ffs*33|1|0.3|ENSG00000125675|chrX:123417460-123417461|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	603.7910766601562	2	603.791778	1205.569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.739	1	15.577	15.077	16.077	-0.16173								0	0	0	0.93466	1	5098	5098		8.1555	0.8663	1		+		15809	16858	9705	9756	15167	15167					-0.02555890350527079
KDHHLHGPEH	10	Unmodified	_KDHHLHGPEH_					0	0	0			REV__GRIA3|p.S522Ffs*33|1|0.3|ENSG00000125675|chrX:123417460-123417461|-/T|frameshift_variant	REV__GRIA3|p.S522Ffs*33|1|0.3|ENSG00000125675|chrX:123417460-123417461|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	603.7374267578125	2	603.791778	1205.569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.775	1	17.6	17.1	18.1	-0.17501								0	0	0	0.82952	1	5921	5921		24.991	11.085	1		+		15810	16858	9705	9756	15168	15168					-0.02555890350527079
KDHNVGSPP	9	Unmodified	_KDHNVGSPP_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B;nc|ENSG00000111647|A0JNW5-2|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MSMS	HCT116MG_D190212_S3	3	475.73834228515625	2	475.738148	949.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.276	1	18.352	17.852	18.852	0.076334								0	0	0	0.46109	1	6196	6196		30.637	0.41173	1				15811	2303	9706	9757	15169	15169					-0.015008602847615293
KDIFFEIKEP	10	Unmodified	_KDIFFEIKEP_					0	0	0			REV__tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1	REV__tr|U7SJF6|U7SJF6_FUSNUV-typeH+-transportingATPasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02123PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	633.3676147460938	2	633.342446	1264.67034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.954	1	28.732	28.232	29.232	-0.22195								0	0	0	0.90669	1	10499	10499		14.405	2.9107	1		+		15812	17693	9707	9758	15170	15170					0.048591235087769746
KDILKIKYVKY	11	Unmodified	_KDILKIKYVKY_					0	0	0		ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	MSMS	HCT116MG_D190212_S1	1	705.8562622070312	2	705.939588	1409.86462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.024	1	40.024	39.524	40.524	0								0	0	0	0.95196	1	15031	15031		5.2969	0	1				15813	6540	9708	9759	15171	15171					0.1760849966474325
KDIQKKRVKVP	11	Unmodified	_KDIQKKRVKVP_					0	0	0			REV__nc|ENSG00000118482|Q92576-2|PHF3	REV__nc|ENSG00000118482|Q92576-2|PHF3	MSMS	HCT116MG_D190212_S3	3	669.9362182617188	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.283	1	54.991	54.491	55.491	-0.2918								0	0	0	0.92983	1	20967	20967		16.149	7.9936	1		+		15814	11635	9709	9760	15172	15172					0.19529266956305946
KDIQPRLKALP	11	Unmodified	_KDIQPRLKALP_					0	0	0			REV__RASSF8|p.W194Gfs*16|1|0.08|ENSG00000123094|chr12:26064971-26064971|T/-|frameshift_variant	REV__RASSF8|p.W194Gfs*16|1|0.08|ENSG00000123094|chr12:26064971-26064971|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	639.8978271484375	2	639.898254	1277.78196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.949	1	40.949	40.449	41.449	0								0	0	0	0.95113	1	15406	15406		5.7319	0	1		+		15815	11756	9710	9761	15173	15173					0.15417602656611962
KDISQGPAAP	10	Unmodified	_KDISQGPAAP_					0	0	0			REV__ENST00000478330.1_1_1:171757000-171759833:+|nuORF	REV__ENST00000478330.1_1_1:171757000-171759833:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	492.2611389160156	2	492.261456	982.50836	0.08488	4.1783E-05	-0.26244	-0.00012919	-0.17756	-8.7408E-05	492.2614698839113	16.334	0.25992	16.419	16.289	16.549	0.085424					6	4	2	0	0	0	0.58749	1	5436	5436		29.082	2.8134	1	1147900	+		15816	10511	9711	9762	15174	15174					0.016405795465175288
KDISQGPAAP	10	Unmodified	_KDISQGPAAP_					0	0	0			REV__ENST00000478330.1_1_1:171757000-171759833:+|nuORF	REV__ENST00000478330.1_1_1:171757000-171759833:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	492.261456	982.50836	0.08488	4.1783E-05	-0.26244	-0.00012919	-0.17756	-8.7408E-05	492.2614698839113	16.334	0.25992	16.419	16.289	16.549	0.085424	-0.029393	-0.00057755	NaN	29.082	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1147900	+		15817	10511	9711	9762							0.016405795465175288
KDISQGPAAP	10	Unmodified	_KDISQGPAAP_					0	0	0			REV__ENST00000478330.1_1_1:171757000-171759833:+|nuORF	REV__ENST00000478330.1_1_1:171757000-171759833:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	492.261456	982.50836	-0.40721	-0.00020045	0.57952	0.00028528	0.17231	8.4824E-05	492.2619187996674	16.644	0.25255	16.478	16.303	16.556	-0.16664	0.029393	0.00025138	NaN	29.082	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804790	+		15818	10511	9711	9762							0.016405795465175288
KDKARLKKI	9	Unmodified	_KDKARLKKI_					0	0	0			REV__nc|ENSG00000144747|P82094-2|TMF1	REV__nc|ENSG00000144747|P82094-2|TMF1	MSMS	HCT116MG_D190212_S1	1	367.2480773925781	3	367.248514	1098.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.423	1	18.423	17.923	18.923	0								0	0	0	0.76954	1	6332	6332		2.4985	0	1		+		15819	12430	9712	9763	15175	15175					0.17829965801979597
KDKCYWCQTH	10	Unmodified	_KDKCYWCQTH_					0	0	0		ENST00000370251.3_2_X:152610995-152612303:+|nuORF	ENST00000370251.3_2_X:152610995-152612303:+|nuORF	ENST00000370251.3_2_X:152610995-152612303:+|nuORF	MSMS	HCT116MG_D190212_S1	1	656.1168212890625	2	656.284082	1310.55361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.548	1	38.548	38.048	39.048	0								0	0	0	0.92917	1	14435	14435		9.3831	2.66	1				15820	7421	9713	9764	15176	15176					-0.0892426125426482
KDKDGKKKRTQ	11	Unmodified	_KDKDGKKKRTQ_					0	0	0			REV__CNOT3|p.P458Lfs*45|1|0.17|ENSG00000088038|chr19:54148705-54148705|C/-|frameshift_variant	REV__CNOT3|p.P458Lfs*45|1|0.17|ENSG00000088038|chr19:54148705-54148705|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	666.167724609375	2	666.391325	1330.7681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.678	1	46.307	45.807	46.807	-0.37134								0	0	0	0.95196	1	17240	17240		5.2969	0	1		+		15821	10215	9714	9765	15177	15177					0.11594325157511776
KDKDKDEY	8	Unmodified	_KDKDKDEY_					0	0	0			REV__SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant	REV__SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	520.703125	2	520.748379	1039.4822	0.53448	0.00027833	-0.040498	-2.1089E-05	0.49398	0.00025724	520.7482823073367	24.021	0.46782	23.637	23.351	23.819	-0.38324					19	8	4	0	0	0	0.73234	1	8541	8541		19.257	3.4098	1	101780000	+		15822	13176	9715	9766	15178	15178					-0.03595734415625884
KDKEFKEKDPK	11	Unmodified	_KDKEFKEKDPK_					0	0	0			REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	MSMS	HCT116MG_D190212_S1	1	696.3776245117188	2	696.380091	1390.74563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.3	1	19.3	18.8	19.8	0								0	0	0	0.95343	1	6685	6685		4.5289	1.2476	1		+		15823	12648	9716	9767	15179	15179					0.06588680969230154
KDKGEKEERPR	11	Unmodified	_KDKGEKEERPR_					0	0	0		nc|ENSG00000205879|Q658T7-2|FAM90A2P;nc|ENSG00000285975|A6NKC0|FAM90A7;nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285937|A6NJQ4|FAM90A8;nc|ENSG00000285814|P0C7W9|FAM90A14;nc|ENSG00000285765|A8MXZ1|FAM90A23;nc|ENSG00000285720|P0DV74|FAM90A17;nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000285657|P0DV76|FAM90A19;nc|ENSG00000254229|A8MX19|FAM90A12;nc|ENSG00000233295|A6NIJ5|FAM90A20;nc|ENSG00000205879|Q658T7|FAM90A2P;nc|ENSG00000233115|A0A8V8TNH8|FAM90A11;nc|ENSG00000230045|P0C7V4|FAM90A15;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215373|A8MXJ8|FAM90A5;nc|ENSG00000215354|P0C7X0|FAM90A24;ENSG00000229924|ENST00000512047|FAM90A26;nc|ENSG00000233132|A0A8V8TPE2|FAM90A3;nc|ENSG00000285975|A6NNJ1|FAM90A9;ENSG00000171847|ENST00000538603|FAM90A1	nc|ENSG00000205879|Q658T7-2|FAM90A2P	nc|ENSG00000205879|Q658T7-2|FAM90A2P	MSMS	HCT116MG_D190212_S4	4	686.3722534179688	2	686.370589	1370.72663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.848	1	32.469	31.969	32.969	-0.37924								0	0	0	0.95025	1	11980	11980		6.1918	0.89496	1				15824	5215	9717	9768	15180	15180					0.05609144398158605
KDKHLRFFHVP	11	Unmodified	_KDKHLRFFHVP_					0	0	0			REV__nc|ENSG00000153303|Q8N878-2|FRMD1	REV__nc|ENSG00000153303|Q8N878-2|FRMD1	MULTI-SECPEP	HCT116MG_D190212_S1	1	712.400390625	2	712.401496	1422.78844	0.69473	0.00049492	-1.3809	-0.00098379	-0.68622	-0.00048886	712.4001034829831	43.446	0.20754	43.446	43.316	43.524	0					5	3	2	0	0	0	0.36495	1	16441	16441		2.9952	0.26005	1	30810000	+		15825	12650	9718	9769	15181	15181					0.09395540607965813
KDKKDRDP	8	Unmodified	_KDKKDRDP_					0	0	0		CEP164|p.A247Gfs*5|1|0.23|ENSG00000110274|chr11:117363476-117363477|-/G|frameshift_variant;CEP164|p.P334Hfs*5|1|0.04|ENSG00000110274|chr11:117371314-117371315|-/A|frameshift_variant;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	CEP164|p.A247Gfs*5|1|0.23|ENSG00000110274|chr11:117363476-117363477|-/G|frameshift_variant	CEP164|p.A247Gfs*5|1|0.23|ENSG00000110274|chr11:117363476-117363477|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	500.7436218261719	2	501.272355	1000.53016	0.4127	0.00020687	0.27594	0.00013832	0.68863	0.00034519	501.27225066213543	15.411	0.15637	15.411	15.327	15.484	0					6	2	3	0	0	0	0.31855	1	5105	5105		4.756	0	1	2007900			15826	404	9719	9770	15182	15182					0.029913842950804792
KDKKKEKKHRR	11	Unmodified	_KDKKKEKKHRR_					0	0	0			REV__ENSG00000116754|ENST00000370949|SRSF11	REV__ENSG00000116754|ENST00000370949|SRSF11	MSMS	HCT116MG_D190212_S1	1	740.9653930664062	2	740.962783	1479.91101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.704	1	38.704	38.204	39.204	0								0	0	0	0.9598	1	14498	14498		1.1933	0.84271	1		+		15827	11593	9720	9771	15183	15183					0.1902537733938061
KDKKKKSKI	9	Unmodified	_KDKKKKSKI_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.E639Rfs*27|1|0.12|ENSG00000156675|chr8:37872887-37872888|-/T|frameshift_variant;RAB11FIP1|p.Q714Tfs*22|1|0.3|ENSG00000156675|chr8:37872662-37872663|-/T|frameshift_variant	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	551.86962890625	2	551.868966	1101.72338	0.40325	0.00022254	1.1684	0.00064478	1.5716	0.00086732	551.8693164159954	58.646	0.30596	58.646	58.514	58.82	0					11	5	3	0	0	0	0.76909	1	22621	22621		0.45834	0.057624	1	26134000			15828	4295	9721	9772	15184	15184					0.17658546082134308
KDKKSYRWFLQ	11	Unmodified	_KDKKSYRWFLQ_					0	0	0		nc|ENSG00000105664|P49747-2|COMP;ENSG00000105664|ENST00000222271|COMP	nc|ENSG00000105664|P49747-2|COMP	nc|ENSG00000105664|P49747-2|COMP	MSMS	HCT116MG_D190212_S3	3	750.2587280273438	2	749.911893	1497.80923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.025	1	43.719	43.219	44.219	-0.30616								0	0	0	0.95273	1	16445	16445		4.897	1.3005	1				15829	2023	9722	9773	15185	15185					0.08024086196974167
KDKLPPPAQCL	11	Unmodified	_KDKLPPPAQCL_					0	0	0			REV__ENSG00000183161|ENST00000327470|FANCF	REV__ENSG00000183161|ENST00000327470|FANCF	MSMS	HCT116MG_D190212_S4	4	605.338134765625	2	605.336641	1208.65873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.356	1	41.981	41.481	42.481	-0.37565								0	0	0	0.95196	1	15564	15564		5.2969	1.3525	1		+		15830	13749	9723	9774	15186	15186					0.06274603213819319
KDKNKLCDFWH	11	Unmodified	_KDKNKLCDFWH_					0	0	0			REV__ENSG00000272636|ENST00000613549|DOC2B	REV__ENSG00000272636|ENST00000613549|DOC2B	MSMS	HCT116MG_D190212_S4	4	717.35595703125	2	717.353354	1432.69215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.69	1	23.442	22.942	23.942	-0.24775								0	0	0	0.9465	1	8308	8308		8.1555	2.4237	1		+		15831	14443	9724	9775	15187	15187					-0.006883950142992035
KDKRRKKRKEK	11	Unmodified	_KDKRRKKRKEK_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MSMS	HCT116MG_D190212_S2	2	750.4849243164062	2	750.483882	1498.95321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.706	1	58.541	58.041	59.041	-0.1653								0	0	0	0.96208	1	22695	22695		0	0	1				15832	1147	9725	9776	15188	15188					0.2236935274777352
KDKRRQEP	8	Unmodified	_KDKRRQEP_					0	0	0		nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	MSMS	HCT116MG_D190212_S4	4	528.4989624023438	2	528.799072	1055.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.982	1	21.754	21.254	22.254	-0.22777								0	0	0	0.85589	1	7621	7621		18.135	1.0221	1				15833	6059	9726	9777	15189	15189					0.05802181797616868
KDKRRRHHHKH	11	Unmodified	_KDKRRRHHHKH_					0	0	0			REV__ENST00000428005.1_1_3:27465485-27525617:-|nuORF	REV__ENST00000428005.1_1_3:27465485-27525617:-|nuORF	MSMS	HCT116MG_D190212_S1	1	767.9346313476562	2	767.937965	1533.86138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.766	1	33.766	33.266	34.266	0								0	0	0	0.95636	1	12507	12507		2.9952	1.8019	1		+		15834	10574	9727	9778	15190	15190					0.11580107173972465
KDKTKIHVMPD	11	Unmodified	_KDKTKIHVMPD_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.N3442Tfs*4|1|0.2|ENSG00000183091|chr2:151618297-151618297|T/-|frameshift_variant;NEB|p.L4198Cfs*51|1|0.35|ENSG00000183091|chr2:151568357-151568357|G/-|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MSMS	HCT116MG_D190212_S4	4	656.3599853515625	2	656.358105	1310.70166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.931	1	36.546	36.046	37.046	-0.38486								0	0	0	0.95196	1	13534	13534		5.2969	1.1074	1				15835	5702	9728	9779	15191	15191					0.05873373271242599
KDKYMKNRHKK	11	Unmodified	_KDKYMKNRHKK_					0	0	0			REV__ENSG00000133111|ENST00000255476|RFXAP	REV__ENSG00000133111|ENST00000255476|RFXAP	MSMS	HCT116MG_D190212_S1	1	738.4160766601562	2	738.41682	1474.81909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.637	1	22.637	22.137	23.137	0								0	0	0	0.95113	1	8024	8024		5.7319	0	1		+		15836	12019	9729	9780	15192	15192					0.10066950930695384
KDLDKETSP	9	Unmodified	_KDLDKETSP_					0	0	0			REV__TCEA1|p.E88K|1|0.26|ENSG00000187735|chr8:53993726-53993726|C/T|missense_variant	REV__TCEA1|p.E88K|1|0.26|ENSG00000187735|chr8:53993726-53993726|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	516.7515869140625	2	516.764029	1031.5135	0.15153	7.8306E-05	0.1453	7.5087E-05	0.29683	0.00015339	516.7640141384276	21.523	0.93484	21.139	20.649	21.583	-0.38491					41	17	3	0	0	0	0.12897	1	7651	7651		34.932	3.6637	1	26714000	+		15837	17622	9730	9781	15193	15193					-0.0009916138151311316
KDLFMMTEPA	10	Unmodified	_KDLFMMTEPA_					0	0	0			REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF	REV__ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	591.7824096679688	2	591.78031	1181.54607	0.58554	0.00034651	3.8289	0.0022659	4.4144	0.0026124	591.7828722606329	21.782	0.26114	21.791	21.685	21.946	0.0092773					6	4	2	0	0	0	0.30526	1	7653	7653		10.074	0.6908	1	1522800	+		15838	13394	9731	9782	15194	15194					-0.037444135745090534
KDLKPKMVLSH	11	Unmodified	_KDLKPKMVLSH_					0	0	0		tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	648.3804931640625	2	648.37884	1294.74313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.522	1	45.522	45.022	46.022	0								0	0	0	0.9465	1	17250	17250		8.1555	2.8586	1				15839	18602	9732	9783	15195	15195					0.10754554030563668
KDLLQDRHHRL	11	Unmodified	_KDLLQDRHHRL_					0	0	0		nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A;INPP4A|p.Q346Afs*26|1|0.06|ENSG00000040933|chr2:98546054-98546055|-/G|frameshift_variant	nc|ENSG00000040933|Q96PE3-2|INPP4A	nc|ENSG00000040933|Q96PE3-2|INPP4A	MSMS	HCT116MG_D190212_S1	1	715.9013061523438	2	715.902391	1429.79023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.767	1	27.767	27.267	28.267	0								0	0	0	0.9387	1	10090	10090		12.241	4.0851	1				15840	1001	9733	9784	15196	15196					0.09252549625921347
KDLLRSKRKLK	11	Unmodified	_KDLLRSKRKLK_					0	0	0		PPP1R26|p.S771Vfs*10|2|0.42|ENSG00000196422|chr9:135486815-135486815|C/-|frameshift_variant;PPP1R26|p.V898Sfs*56|6|0.32|ENSG00000196422|chr9:135487197-135487197|G/-|frameshift_variant;PPP1R26|p.T864Pfs*90|1|0.38|ENSG00000196422|chr9:135487096-135487096|C/-|frameshift_variant;PPP1R26|p.H1106Tfs*48|1|0.38|ENSG00000196422|chr9:135487822-135487822|C/-|frameshift_variant;ENSG00000196422|ENST00000356818|PPP1R26	PPP1R26|p.S771Vfs*10|2|0.42|ENSG00000196422|chr9:135486815-135486815|C/-|frameshift_variant	PPP1R26|p.S771Vfs*10|2|0.42|ENSG00000196422|chr9:135486815-135486815|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	692.9580688476562	2	692.959178	1383.9038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.548	1	37.445	36.945	37.945	-0.10318								0	0	0	0.96003	1	14078	14078		1.0715	0.76443	1				15841	6068	9734	9785	15197	15197					0.22720644738956253
KDLLVNQWLRF	11	Unmodified	_KDLLVNQWLRF_					0	0	0			REV__GRAMD1C|p.F242Lfs*10|1|0.04|ENSG00000178075|chr3:113904208-113904209|-/GATAATAAATGGACTACTG|frameshift_variant	REV__GRAMD1C|p.F242Lfs*10|1|0.04|ENSG00000178075|chr3:113904208-113904209|-/GATAATAAATGGACTACTG|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	716.3842163085938	2	716.408986	1430.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.482	1	39.482	38.982	39.982	0								0	0	0	0.95636	1	14812	14812		2.9952	0	1		+		15842	13594	9735	9786	15198	15198					0.10524987685289489
KDLMFWRAKWP	11	Unmodified	_KDLMFWRAKWP_					0	0	0			REV__ENST00000444527.2_1_8:56362086-56362449:-|nuORF	REV__ENST00000444527.2_1_8:56362086-56362449:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	493.2112731933594	3	493.263947	1476.77001	0.25121	0.00012391	-1.4352	-0.00070791	-1.1839	-0.000584	493.5974822566302	23.556	0.25978	23.173	23.039	23.299	-0.38324					6	4	2	0	0	0	0.36554	1	8429	8429		0.40827	0.11263	1	8791000	+		15843	15664	9736	9787	15199	15199					0.05069662641744799
KDLMKINL	8	Unmodified	_KDLMKINL_					0	0	0		tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	tr|U7SF08|U7SF08_FUSNUCRISPRtypeIII-a/mtube-associatedproteincsm6OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02349PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	487.79071044921875	2	487.788795	973.563038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.901	1	43.823	43.323	44.323	-0.078373								0	0	0	0.81076	1	16659	16659		21.747	2.4897	1				15844	18289	9737	9788	15200	15200					0.07519875093566952
KDLNPHCALQ	10	Unmodified	_KDLNPHCALQ_					0	0	0			REV__ENSG00000159348|ENST00000367249|CYB5R1	REV__ENSG00000159348|ENST00000367249|CYB5R1	MULTI-SECPEP	HCT116MG_D190212_S3	3	569.1826171875	2	569.787315	1137.56008	0.56792	0.00032359	-0.44033	-0.00025089	0.12759	7.2699E-05	569.7870530696713	29.164	0.62472	28.942	28.525	29.15	-0.22196					19	11	2	0	0	0	0.2945	1	10524	10524		11.495	2.7493	1	4945100	+		15845	12802	9738	9789	15201	15201					-0.0032000003122902854
KDLNPHCALQ	10	Unmodified	_KDLNPHCALQ_					0	0	0			REV__ENSG00000159348|ENST00000367249|CYB5R1	REV__ENSG00000159348|ENST00000367249|CYB5R1	MULTI-SECPEP	HCT116MG_D190212_S4	4	569.1829833984375	2	569.787315	1137.56008	0.54332	0.00030958	-0.56015	-0.00031916	-0.016825	-9.5867E-06	569.7873243451394	29.38	0.57132	29.031	28.617	29.189	-0.34921					22	10	3	0	0	0	0.30788	1	10458	10458		5.2969	0.39987	1	5597600	+		15846	12802	9738	9789	15202	15202					-0.0032000003122902854
KDLPPLLLKL	10	Unmodified	_KDLPPLLLKL_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MSMS	HCT116MG_D190212_S2	2	575.3837890625	2	575.383917	1148.75328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.401	1	37.298	36.798	37.798	-0.10318								0	0	0	0.96453	1	14018	14018		1.4819	0	1				15847	3345	9739	9790	15203	15203					0.18485485027463255
KDLRERPLAAP	11	Unmodified	_KDLRERPLAAP_					0	0	0			REV__ENST00000543087.5_1_11:18512432-18536353:-|nuORF	REV__ENST00000543087.5_1_11:18512432-18536353:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	634.7260131835938	2	633.369861	1264.72517	0.51716	0.00032755	-1.2604	-0.0007983	-0.74324	-0.00047075	633.3689708930365	50.258	0.51511	50.258	50.059	50.574	0					22	9	3	0	0	0	0.74191	1	19159	19159		2.4985	0.41248	1	50299000	+		15848	16382	9740	9791	15204	15204					0.10339555100085818
KDLRIYGN	8	Unmodified	_KDLRIYGN_					0	0	0		tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	489.7721862792969	2	489.771991	977.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.788	1	21.795	21.295	22.295	0.0070477								0	0	0	0.82741	1	7610	7610		20.415	6.9067	1				15849	18317	9741	9792	15205	15205					0.039765896460380645
KDLRLALSV	9	Unmodified	_KDLRLALSV_					0	0	0		ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1	ENSG00000168329|ENST00000399220|CX3CR1	ENSG00000168329|ENST00000399220|CX3CR1	MSMS	HCT116MG_D190212_S2	2	508.2500915527344	2	507.818941	1013.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.814	1	45.712	45.212	46.212	-0.1014								0	0	0	0.62451	1	17433	17433		22.736	2.2827	1				15850	5001	9742	9793	15206	15206					0.11706308748318861
KDLRLKKLP	9	Unmodified	_KDLRLKKLP_					0	0	0		nc|ENSG00000128849|Q0VF96-2|CGNL1;ENSG00000128849|ENST00000281282|CGNL1	nc|ENSG00000128849|Q0VF96-2|CGNL1	nc|ENSG00000128849|Q0VF96-2|CGNL1	MSMS	HCT116MG_D190212_S3	3	555.7596435546875	2	555.871508	1109.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.03	1	36.729	36.229	37.229	-0.30113								0	0	0	0.76902	1	13703	13703		4.3292	0.38484	1				15851	3016	9743	9794	15207	15207					0.17798849944756512
KDLRLRIMYTC	11	Unmodified	_KDLRLRIMYTC_					0	0	0		ENST00000376048.9_1_1:14059312-14068572:+|nuORF;PRDM2|p.R66Dfs*37|1|0.22|ENSG00000116731|chr1:13732841-13732841|A/-|frameshift_variant	ENST00000376048.9_1_1:14059312-14068572:+|nuORF	ENST00000376048.9_1_1:14059312-14068572:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	706.5115966796875	2	706.381057	1410.74756	0.92793	0.00065547	-0.22283	-0.0001574	0.7051	0.00049807	706.88175354338	35.153	0.15554	34.994	34.865	35.02	-0.15834					4	2	2	0	0	0	0.74191	1	13053	13053		4.897	0	1	6044800			15852	7512	9744	9795	15208	15208					0.05861695181829418
KDLSQEFGMPL	11	Unmodified	_KDLSQEFGMPL_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MSMS	HCT116MG_D190212_S1	1	632.8165893554688	2	632.815738	1263.61692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.16	1	29.16	28.66	29.66	0								0	0	0	0.92983	1	10647	10647		16.149	1.7437	1				15853	2429	9745	9796	15209	15209					-0.004339972653724544
KDLVKIKV	8	Unmodified	_KDLVKIKV_					0	0	0		tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	471.2742614746094	2	471.820953	941.627353	0.49156	0.00023193	-0.0064946	-3.0643E-06	0.48506	0.00022886	471.82089865456436	34.48	0.25774	34.305	34.175	34.433	-0.17512					7	4	2	0	0	0	0.32797	1	12783	12783		1.8442	0	1	16458000			15854	18618	9746	9797	15210	15210					0.15420398242031297
KDLWKVTWGS	10	Unmodified	_KDLWKVTWGS_					0	0	0		ENST00000566525.5_1_16:771546-771968:+|nuORF;ENST00000564640.5_1_16:771244-771968:+|nuORF	ENST00000566525.5_1_16:771546-771968:+|nuORF	ENST00000566525.5_1_16:771546-771968:+|nuORF	MSMS	HCT116MG_D190212_S1	1	407.2216491699219	3	407.220513	1218.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.581	1	62.581	62.081	63.081	0								0	0	0	0.96377	1	24168	24168		0.69767	0.07084	1				15855	8847	9747	9798	15211	15211					0.039133899144189854
KDMPRIAI	8	Unmodified	_KDMPRIAI_					0	0	0			REV__nc|ENSG00000137812|Q8NG31-3|KNL1	REV__nc|ENSG00000137812|Q8NG31-3|KNL1	MSMS	HCT116MG_D190212_S1	1	472.27532958984375	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.934	1	29.934	29.434	30.434	0								0	0	0	0.8837	1	10959	10959		7.2892	2.0586	1		+		15856	12192	9748	9799	15212	15212					0.05850721779336254
KDMRPFFEEYW	11	Unmodified	_KDMRPFFEEYW_					0	0	0		ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	MSMS	HCT116MG_D190212_S1	1	774.3535766601562	2	774.353019	1546.69149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.504	1	49.504	49.004	50.004	0								0	0	0	0.9598	1	18865	18865		1.1933	0.84271	1				15857	2672	9749	9800	15213	15213					-0.059992344539750775
KDNCLWAQAP	10	Unmodified	_KDNCLWAQAP_					0	0	0			REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	REV__nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MSMS	HCT116MG_D190212_S3	3	572.7963256835938	2	573.274041	1144.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.537	1	16.623	16.123	17.123	0.085424								0	0	0	0.89062	1	5495	5495		17.113	3.2068	1		+		15858	12034	9750	9801	15214	15214					-0.03295688922571571
KDNFLEWRRQ	10	Unmodified	_KDNFLEWRRQ_					0	0	0		ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MSMS	HCT116MG_D190212_S4	4	696.36572265625	2	696.362567	1390.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.252	1	35.867	35.367	36.367	-0.38558								0	0	0	0.95648	1	13259	13259		3.2813	0.28607	1				15859	1004	9751	9802	15215	15215					0.030854829519284976
KDNKLPSRVRD	11	Unmodified	_KDNKLPSRVRD_					0	0	0			REV__ENSG00000100207|ENST00000677622|TCF20	REV__ENSG00000100207|ENST00000677622|TCF20	MSMS	HCT116MG_D190212_S1	1	664.3756103515625	2	664.375675	1326.7368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.029	1	47.029	46.529	47.529	0								0	0	0	0.95731	1	17859	17859		2.4985	1.0166	1		+		15860	11070	9752	9803	15216	15216					0.08649752123415055
KDNSHTREH	9	Unmodified	_KDNSHTREH_					0	0	0			REV__ENSG00000167637|ENST00000618787|ZNF283	REV__ENSG00000167637|ENST00000618787|ZNF283	MULTI-SECPEP	HCT116MG_D190212_S2	2	561.7646484375	2	562.265593	1122.51663	0.58119	0.00032679	0.35012	0.00019686	0.93132	0.00052365	562.2658011311045	25.945	0.25951	25.576	25.446	25.706	-0.36914					8	4	2	0	0	0	0.24195	1	9377	9377		9.3831	0	1	14861000	+		15861	13157	9753	9804	15217	15217					-0.039724734841456666
KDPADETEAD	10	Unmodified	_KDPADETEAD_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MSMS	HCT116MG_D190212_S1	1	545.9335327148438	2	545.730383	1089.44621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.438	1	16.438	15.938	16.938	0								0	0	0	0.46397	1	5532	5532		49.527	18.259	1				15862	2583	9754	9805	15218	15218					-0.09493236383150361
KDPAPGHTEES	11	Unmodified	_KDPAPGHTEES_					0	0	0		ENST00000604297.1_1_X:46421090-46422044:-|nuORF	ENST00000604297.1_1_X:46421090-46422044:-|nuORF	ENST00000604297.1_1_X:46421090-46422044:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	584.267578125	2	584.267467	1166.52038	0.57049	0.00033332	0.39306	0.00022965	0.96355	0.00056297	584.2676624204311	22.669	0.25972	22.284	22.154	22.414	-0.3852					7	4	2	0	0	0	0.72786	1	8073	8073		11.518	2.1348	1	11370000			15863	9106	9755	9806	15219	15219					-0.05621848500959459
KDPDKQPGPQG	11	Unmodified	_KDPDKQPGPQG_					0	0	0		ENSG00000171540|ENST00000306422|OTP	ENSG00000171540|ENST00000306422|OTP	ENSG00000171540|ENST00000306422|OTP	MSMS	HCT116MG_D190212_S3	3	583.7940673828125	2	583.793652	1165.57275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.99	1	25.862	25.362	26.362	-0.12795								0	0	0	0.8876	1	9304	9304		21.59	2.2282	1				15864	5204	9756	9807	15220	15220					-0.003412653673422028
KDPDKQPGPQG	11	Unmodified	_KDPDKQPGPQG_					0	0	0		ENSG00000171540|ENST00000306422|OTP	ENSG00000171540|ENST00000306422|OTP	ENSG00000171540|ENST00000306422|OTP	MULTI-MSMS	HCT116MG_D190212_S4	4	583.7940063476562	2	583.793652	1165.57275	0.34342	0.00020048	-0.30127	-0.00017588	0.042142	2.4602E-05	583.7936435150165	25.998	0.98879	25.708	25.047	26.036	-0.29023					28	18	2	0	0	0	0.7093	1	9148	9148		18.373	1.2602	1	3338800			15865	5204	9756	9807	15221	15221					-0.003412653673422028
KDPEGLFLQDN	11	Unmodified	_KDPEGLFLQDN_					0	0	0		ENSG00000138207|ENST00000371464|RBP4	ENSG00000138207|ENST00000371464|RBP4	ENSG00000138207|ENST00000371464|RBP4	MSMS	HCT116MG_D190212_S3	3	638.3155517578125	2	638.314417	1274.61428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.992	1	20.04	19.54	20.54	0.048107								0	0	0	0.9465	1	6888	6888		8.1555	0.54658	1				15866	3543	9757	9808	15222	15222					-0.0120412939866128
KDPHTRWKLL	10	Unmodified	_KDPHTRWKLL_					0	0	0			REV__ENST00000476846.1_7:111503332-111846439:-|nuORF	REV__ENST00000476846.1_7:111503332-111846439:-|nuORF	MSMS	HCT116MG_D190212_S4	4	647.376220703125	2	647.374946	1292.73534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.953	1	37.57	37.07	38.07	-0.38283								0	0	0	0.94551	1	13895	13895		5.7319	0.83484	1		+		15867	10402	9758	9809	15223	15223					0.10068162825314175
KDPIAKPSPP	10	Unmodified	_KDPIAKPSPP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	525.30224609375	2	525.303124	1048.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.155	1	33.769	33.269	34.269	-0.38558								0	0	0	0.89062	1	12460	12460		17.113	4.8722	1				15868	4258;9506	9759	9810	15224	15224					0.06934315994362805
KDPKEYANQF	10	Unmodified	_KDPKEYANQF_					0	0	0		nc|ENSG00000145321|P02774-2|GC;ENSG00000145321|ENST00000273951|GC;nc|ENSG00000145321|P02774-3|GC	nc|ENSG00000145321|P02774-2|GC	nc|ENSG00000145321|P02774-2|GC	MSMS	HCT116MG_D190212_S4	4	620.30517578125	2	620.303852	1238.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.079	1	33.695	33.195	34.195	-0.38426								0	0	0	0.91638	1	12430	12430		12.241	0	1				15869	3905	9760	9811	15225	15225					-0.016600947075630756
KDPNDEYRFKK	11	Unmodified	_KDPNDEYRFKK_					0	0	0			REV__tr|U7SWD0|U7SWD0_FUSNUDUF1963domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00981PE=4SV=1	REV__tr|U7SWD0|U7SWD0_FUSNUDUF1963domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00981PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	720.3687744140625	2	720.367515	1438.72048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.243	1	42.243	41.743	42.743	0								0	0	0	0.95343	1	15928	15928		4.5289	1.2476	1		+		15870	17848	9761	9812	15226	15226					0.018666261666112405
KDPQRADYGAE	11	Unmodified	_KDPQRADYGAE_					0	0	0			REV__ZDHHC17|p.V83A|1|0.27|ENSG00000186908|chr12:76805367-76805367|T/C|missense_variant	REV__ZDHHC17|p.V83A|1|0.27|ENSG00000186908|chr12:76805367-76805367|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	625.3160400390625	2	625.294016	1248.57348	0.38329	0.00023967	0.42038	0.00026286	0.80367	0.00050253	625.2946336588815	22.582	1.8115	22.563	21.657	23.469	-0.018869					66	34	4	0	0	0	0.69168	1	8214	8214		24.882	4.467	1	30973000	+		15871	18067	9762	9813	15227	15227					-0.04086470718266355
KDPRIWEKDRF	11	Unmodified	_KDPRIWEKDRF_					0	0	0			REV__ENST00000595407.1_1_19:41939391-41944316:-|nuORF	REV__ENST00000595407.1_1_19:41939391-41944316:-|nuORF	MSMS	HCT116MG_D190212_S4	4	745.3966064453125	2	745.39915	1488.78375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.456	1	44.083	43.583	44.583	-0.37373								0	0	0	0.95636	1	16379	16379		2.9952	0	1		+		15872	11247	9763	9814	15228	15228					0.05890611674522006
KDPSAQDYFE	10	Unmodified	_KDPSAQDYFE_					0	0	0			REV__PCDH9|p.R1102M|1|0.18|ENSG00000184226|chr13:66631245-66631245|C/A|missense_variant	REV__PCDH9|p.R1102M|1|0.18|ENSG00000184226|chr13:66631245-66631245|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	600.263916015625	2	600.264393	1198.51423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.246	1	18.071	17.571	18.571	-0.17501								0	0	0	0.88261	1	6111	6111		18.146	1.0335	1		+		15873	13789	9764	9815	15229	15229					-0.07708366732504146
KDPSRRLPSLP	11	Unmodified	_KDPSRRLPSLP_					0	0	0		ENST00000478021.1_1_17:27071820-27071916:+|nuORF	ENST00000478021.1_1_17:27071820-27071916:+|nuORF	ENST00000478021.1_1_17:27071820-27071916:+|nuORF	MSMS	HCT116MG_D190212_S2	2	633.0669555664062	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.686	1	28.368	27.868	28.868	-0.31796								0	0	0	0.94145	1	10475	10475		10.8	4.0763	1				15874	8216	9765	9816	15230	15230					0.10339555100085818
KDPVALHEL	9	Unmodified	_KDPVALHEL_					0	0	0		ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1	ENST00000483991.5_1_9:138703157-138717996:-|nuORF	ENST00000483991.5_1_9:138703157-138717996:-|nuORF	MSMS	HCT116MG_D190212_S3	3	511.28631591796875	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.624	1	24.54	24.04	25.04	-0.083694								0	0	0	0.76655	1	8753	8753		13.042	1.5478	1				15875	3086	9766	9817	15231	15231					0.05093742960275449
KDPVELVSWLQ	11	Unmodified	_KDPVELVSWLQ_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MSMS	HCT116MG_D190212_S2	2	657.3568115234375	2	657.358628	1312.7027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.284	1	54.095	53.595	54.595	-0.1894								0	0	0	0.91979	1	20895	20895		17.443	2.1942	1		+		15876	13728	9767	9818	15232	15232					0.058859109117975095
KDQDWNDFLQQ	11	Unmodified	_KDQDWNDFLQQ_					0	0	0		ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	HCT116MG_D190212_S1	1	718.8236083984375	2	718.82568	1435.63681	0.96954	0.00069693	-2.2618	-0.0016259	-1.2923	-0.00092893	718.8233231477752	17.275	0.78234	17.275	16.942	17.724	0					34	14	3	0	0	0	0.70332	1	5883	5883		20.581	6.1756	1	6461500			15877	4977	9768	9819	15233	15233					-0.06358530001057261
KDQNNESHP	9	Unmodified	_KDQNNESHP_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	HCT116MG_D190212_S3	3	357.0493469238281	3	356.828343	1067.4632	-0.061043	-2.1782E-05	0.39696	0.00014165	0.33592	0.00011987	356.828471454315	14.981	0.41584	15.064	14.882	15.298	0.083271					10	7	2	0	0	0	0.26328	1	4959	4959		0.20686	0	1	841070	+		15878	11659	9769	9820	15234	15234					-0.06783270986647949
KDQPRDYSGGK	11	Unmodified	_KDQPRDYSGGK_					0	0	0		ZNF155|p.E509Gfs*7|1|0.27|ENSG00000204920|chr19:43997378-43997379|-/G|frameshift_variant	ZNF155|p.E509Gfs*7|1|0.27|ENSG00000204920|chr19:43997378-43997379|-/G|frameshift_variant	ZNF155|p.E509Gfs*7|1|0.27|ENSG00000204920|chr19:43997378-43997379|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	625.8102416992188	2	625.809833	1249.60511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.768	1	24.5	24	25	-0.26881								0	0	0	0.93492	1	8744	8744		14.218	1.1757	1				15879	18719	9770	9821	15235	15235					-0.009704779643698203
KDQRPLGTYPD	11	Unmodified	_KDQRPLGTYPD_					0	0	0		ENST00000583808.1_1_17:7999947-8006832:-|nuORF;ENSG00000179148|ENST00000448843|ALOXE3;nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	ENST00000583808.1_1_17:7999947-8006832:-|nuORF	ENST00000583808.1_1_17:7999947-8006832:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	645.3287963867188	2	645.327859	1288.64116	0.52506	0.00033883	0.51781	0.00033416	1.0429	0.00067299	645.3279849001068	32.324	0.62469	32.046	31.786	32.41	-0.27841					17	11	2	0	0	0	0.73844	1	11976	11976		7.609	0.50723	1	2937900			15880	5539	9771	9822	15236	15236					0.008389792125399254
KDQRPLGTYPD	11	Unmodified	_KDQRPLGTYPD_					0	0	0		ENST00000583808.1_1_17:7999947-8006832:-|nuORF;ENSG00000179148|ENST00000448843|ALOXE3;nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	ENST00000583808.1_1_17:7999947-8006832:-|nuORF	ENST00000583808.1_1_17:7999947-8006832:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	645.326416015625	2	645.327859	1288.64116	0.46981	0.00030318	-0.059825	-3.8607E-05	0.40998	0.00026457	645.327811028573	30.202	1.4837	29.845	28.558	30.041	-0.3571					66	29	3	0	0	0	0.70662	1	10563	10563		19.362	3.2128	1	10374000			15881	5539	9771	9822	15237	15237					0.008389792125399254
KDQTLYPH	8	Unmodified	_KDQTLYPH_					0	0	0			REV__AKR1B10|p.E194D|1|0.58|ENSG00000198074|chr7:134537080-134537080|G/T|missense_variant	REV__AKR1B10|p.E194D|1|0.58|ENSG00000198074|chr7:134537080-134537080|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	502.2862548828125	2	501.256174	1000.49779	0.54451	0.00027294	-0.26795	-0.00013431	0.27656	0.00013863	501.2560214660288	32.661	0.78115	32.376	31.883	32.664	-0.2851					47	14	4	0	0	0	0.71077	1	11975	11975		21.747	1.293	1	70033000	+		15882	9909	9772	9823	15238	15238					-0.002434031079133092
KDQTQTLP	8	Unmodified	_KDQTQTLP_					0	0	0			REV__ENST00000568064.5_1_16:89804366-89804651:+|nuORF	REV__ENST00000568064.5_1_16:89804366-89804651:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	465.20550537109375	2	465.748182	929.481811	0.36865	0.0001717	-1.039	-0.0004839	-0.67032	-0.0003122	465.7476128341362	22.317	0.15528	21.932	21.843	21.999	-0.3852					4	2	2	0	0	0	0.25719	1	7889	7889		28.487	0	1	11675000	+		15883	12790	9773	9824	15239	15239					0.014248906551870277
KDQYGAEQ	8	Unmodified	_KDQYGAEQ_					0	0	0			REV__tr|U7SLR0|U7SLR0_FUSNUTyrosinephenol-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tplPE=3SV=1	REV__tr|U7SLR0|U7SLR0_FUSNUTyrosinephenol-lyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tplPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2482604980469	2	469.714339	937.414125	0.22005	0.00010336	-0.038405	-1.804E-05	0.18164	8.532E-05	469.7142171679035	20.674	0.84117	20.294	19.761	20.602	-0.37949					33	15	3	0	0	0	0.64395	1	7116	7116		28.495	2.2264	1	14798000	+		15884	17710	9774	9825	15240	15240					-0.05708559275615244
KDRAIRSLLKQ	11	Unmodified	_KDRAIRSLLKQ_					0	0	0			REV__ENSG00000065457|ENST00000564657|ADAT1	REV__ENSG00000065457|ENST00000564657|ADAT1	MSMS	HCT116MG_D190212_S4	4	664.4130249023438	2	664.41206	1326.80957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47	1	46.629	46.129	47.129	-0.37038								0	0	0	0.95196	1	17370	17370		5.2969	2.3016	1		+		15885	10700	9775	9826	15241	15241					0.1592350591683953
KDRERWRKHLK	11	Unmodified	_KDRERWRKHLK_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	517.9714965820312	3	517.970814	1550.89061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.021	1	32.736	32.236	33.236	-0.28511								0	0	0	0.96196	1	12123	12123		0.064406	0.064406	1				15886	5320	9776	9827	15242	15242					0.13720206679568037
KDRHPLLGSA	10	Unmodified	_KDRHPLLGSA_					0	0	0		ENST00000586020.1_1_19:4529720-4540017:-|nuORF;ENSG00000214456|ENST00000381848|PLIN5	ENST00000586020.1_1_19:4529720-4540017:-|nuORF	ENST00000586020.1_1_19:4529720-4540017:-|nuORF	MSMS	HCT116MG_D190212_S4	4	547.3086547851562	2	547.309272	1092.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.864	1	27.542	27.042	28.042	-0.32157								0	0	0	0.87399	1	9994	9994		19.257	2.1441	1				15887	6434	9777	9828	15243	15243					0.0613935245742141
KDRIAKEEGA	10	Unmodified	_KDRIAKEEGA_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000413027.1_1_6:31249248-31249293:+|nuORF;ENST00000437106.1_1_21:37541270-37541486:-|nuORF;ENST00000417615.1_1_14:99439218-99439536:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	HCT116MG_D190212_S1	1	558.803955078125	2	558.80402	1115.59349	0.4885	0.00027298	-0.46485	-0.00025976	0.023658	1.322E-05	558.8036713182736	15.013	0.20822	15.013	14.858	15.066	0					5	3	2	0	0	0	0.82965	1	4978	4978		9.544	1.3884	1	2779600			15888	1688	9778	9829	15244	15244					0.040313250123290345
KDRITYFDKNY	11	Unmodified	_KDRITYFDKNY_					0	0	0		ENST00000467758.1_1_1:62941350-62941566:-|nuORF;nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	ENST00000467758.1_1_1:62941350-62941566:-|nuORF	ENST00000467758.1_1_1:62941350-62941566:-|nuORF	MSMS	HCT116MG_D190212_S3	3	731.867431640625	2	731.869891	1461.72523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.787	1	20.821	20.321	21.321	0.034473								0	0	0	0.95196	1	7209	7209		5.2969	0.39987	1				15889	2522	9779	9830	15245	15245					0.012835103094175793
KDRIYEEFERQ	11	Unmodified	_KDRIYEEFERQ_					0	0	0			REV__ENST00000511077.1_1_5:145887408-145889630:+|nuORF	REV__ENST00000511077.1_1_5:145887408-145889630:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	756.4586181640625	2	756.875704	1511.73686	0.88796	0.00067207	-0.44481	-0.00033666	0.44315	0.00033541	757.3766916530705	40.269	0.73267	39.891	39.553	40.286	-0.37828					27	19	2	0	0	0	0.74191	1	14907	14907		1.1933	0	1	3901500	+		15890	11492	9780	9831	15246	15246					0.0014570733276286774
KDRKDIIFLEA	11	Unmodified	_KDRKDIIFLEA_					0	0	0		tr|U7SZE1|U7SZE1_FUSNUAdeninephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00717PE=4SV=1	tr|U7SZE1|U7SZE1_FUSNUAdeninephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00717PE=4SV=1	tr|U7SZE1|U7SZE1_FUSNUAdeninephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00717PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	674.3833618164062	2	674.385177	1346.7558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.096	1	22.71	22.21	23.21	-0.3852								0	0	0	0.9387	1	8214	8214		12.241	0.74595	1				15891	18525	9781	9832	15247	15247					0.09629288694463867
KDRKERERDRD	11	Unmodified	_KDRKERERDRD_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-SECPEP	HCT116MG_D190212_S2	2	501.59783935546875	3	501.597593	1501.77095	0.38759	0.00019441	0.075827	3.8035E-05	0.46342	0.00023245	501.59768703935566	32.632	0.26067	32.421	32.273	32.534	-0.21135					7	4	2	0	0	0	0.36598	1	12107	12107		2.6312	2.223	1	13597000	+		15892	12358	9782	9833	15248	15248					0.040135485443670404
KDRKLYKFL	9	Unmodified	_KDRKLYKFL_					0	0	0		nc|ENSG00000176095|Q92551-2|IP6K1;ENSG00000176095|ENST00000321599|IP6K1	nc|ENSG00000176095|Q92551-2|IP6K1	nc|ENSG00000176095|Q92551-2|IP6K1	MSMS	HCT116MG_D190212_S1	1	404.2489318847656	3	404.248403	1209.72338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.431	1	26.431	25.931	26.931	0								0	0	0	0.7696	1	9549	9549		1.1933	0.12188	1				15893	5406	9783	9834	15249	15249					0.12690546082126275
KDRLRRRLKEK	11	Unmodified	_KDRLRRRLKEK_					0	0	0		nc|ENSG00000134030|O43310-2|CTIF;ENSG00000134030|ENST00000256413|CTIF	nc|ENSG00000134030|O43310-2|CTIF	nc|ENSG00000134030|O43310-2|CTIF	MSMS	HCT116MG_D190212_S4	4	749.4775390625	2	749.476057	1496.93756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.848	1	47.479	46.979	47.979	-0.36907								0	0	0	0.96138	1	17701	17701		1.0715	0.67075	1				15894	3260	9784	9835	15250	15250					0.2089706623071379
KDRPCMGP	8	Unmodified	_KDRPCMGP_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MSMS	HCT116MG_D190212_S4	4	452.2135009765625	2	452.212398	902.410242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.59	1	27.269	26.769	27.769	-0.32157								0	0	0	0.8837	1	9884	9884		11.114	0.93107	1		+		15895	17260	9785	9836	15251	15251					-0.04486643574671234
KDRRRGHWCPV	11	Unmodified	_KDRRRGHWCPV_					0	0	0		ENST00000483744.5_1_10:86007469-86008730:+|nuORF	ENST00000483744.5_1_10:86007469-86008730:+|nuORF	ENST00000483744.5_1_10:86007469-86008730:+|nuORF	MSMS	HCT116MG_D190212_S1	1	705.3690185546875	2	705.370204	1408.72585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.761	1	40.761	40.261	41.261	0								0	0	0	0.9465	1	15330	15330		8.1555	0.54658	1				15896	8276	9786	9837	15252	15252					0.03784071268137268
KDRRWRVVT	9	Unmodified	_KDRRWRVVT_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	HCT116MG_D190212_S1	1	608.3574829101562	2	608.357088	1214.69962	0.55828	0.00033963	-0.54241	-0.00032998	0.015871	9.6554E-06	608.3570202474802	14.902	0.15611	14.902	14.806	14.962	0					4	2	2	0	0	0	0.63131	1	4932	4932		9.3831	3.6513	1	1164600			15897	2406	9787	9838	15253	15253					0.10086125368297871
KDRSLRLHRF	10	Unmodified	_KDRSLRLHRF_					0	0	0		ENSG00000256188|ENST00000539585|TAS2R30	ENSG00000256188|ENST00000539585|TAS2R30	ENSG00000256188|ENST00000539585|TAS2R30	MSMS	HCT116MG_D190212_S2	2	664.3873901367188	2	664.388919	1326.76329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.504	1	22.119	21.619	22.619	-0.3852								0	0	0	0.94551	1	7976	7976		5.7319	0	1				15898	6608	9788	9839	15254	15254					0.11297485805380347
KDRVILLFSP	10	Unmodified	_KDRVILLFSP_					0	0	0		nc|ENSG00000176748|P0C646|OR52Z1P	nc|ENSG00000176748|P0C646|OR52Z1P	nc|ENSG00000176748|P0C646|OR52Z1P	MSMS	HCT116MG_D190212_S2	2	594.3619995117188	2	594.360973	1186.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.872	1	57.698	57.198	58.198	-0.17494								0	0	0	0.94107	1	22354	22354		6.7232	0.51738	1				15899	9559	9789	9840	15255	15255					0.12150839845230621
KDRYPSLNP	9	Unmodified	_KDRYPSLNP_					0	0	0		ENST00000549206.5_1_12:93964246-93966472:+|nuORF	ENST00000549206.5_1_12:93964246-93966472:+|nuORF	ENST00000549206.5_1_12:93964246-93966472:+|nuORF	MSMS	HCT116MG_D190212_S1	1	545.2855834960938	2	545.288005	1088.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.747	1	32.747	32.247	33.247	0								0	0	0	0.76739	1	12095	12095		10.074	1.3285	1				15900	8744	9790	9841	15256	15256					0.020719573291671622
KDSGSDSGESA	11	Unmodified	_KDSGSDSGESA_					0	0	0			REV__SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant	REV__SMG5|p.A961Gfs*3|1|0.36|ENSG00000198952|chr1:156250943-156250944|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	520.2564086914062	2	520.212357	1038.41016	0.32534	0.00016925	1.7215	0.00089553	2.0468	0.0010648	520.2131496166551	20.405	0.25999	20.204	20.04	20.3	-0.20133					6	4	2	0	0	0	0.3621	1	7007	7007		6.6304	2.686	1	1782100	+		15901	14172	9791	9842	15257	15257					-0.10750693559975844
KDSIARQVA	9	Unmodified	_KDSIARQVA_					0	0	0		ENST00000563785.5_1_16:88722464-88729488:-|nuORF;ENSG00000167508|ENST00000301012|MVD;ENST00000565149.5_1_16:88718935-88722722:-|nuORF	ENST00000563785.5_1_16:88722464-88729488:-|nuORF	ENST00000563785.5_1_16:88722464-88729488:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2827453613281	2	494.282723	986.550893	0.29387	0.00014525	0.27673	0.00013678	0.5706	0.00028204	494.2828225146155	21.101	0.26056	20.719	20.546	20.807	-0.38288					7	4	2	0	0	0	0.30117	1	7424	7424		30.637	0	1	8120700			15902	4923	9792	9843	15258	15258					0.057079746747604077
KDSNPNVNFYL	11	Unmodified	_KDSNPNVNFYL_					0	0	0			REV__ENST00000452400.6_1_8:71023420-71023603:-|nuORF	REV__ENST00000452400.6_1_8:71023420-71023603:-|nuORF	MSMS	HCT116MG_D190212_S3	3	655.8251953125	2	655.822409	1309.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.584	1	22.565	22.065	23.065	-0.018869								0	0	0	0.92983	1	7931	7931		16.149	3.1066	1		+		15903	15719	9793	9844	15259	15259					-0.012164231617589394
KDTEKMYP	8	Unmodified	_KDTEKMYP_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	HCT116MG_D190212_S1	1	505.7430419921875	2	506.244418	1010.47428	0.49054	0.00024833	1.2658	0.00064078	1.7563	0.00088911	506.24453224984757	28.034	0.31192	28.034	27.904	28.216	0					8	5	2	0	0	0	0.30703	1	10198	10198		12.532	0	1	9962300			15904	5624	9794	9845	15260	15260					-0.030535849367538503
KDTKDSRP	8	Unmodified	_KDTKDSRP_					0	0	0		ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	ENSG00000106541|ENST00000419304|AGR2	MSMS	HCT116MG_D190212_S3	3	473.75128173828125	2	473.751256	945.487959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.685	1	20.719	20.219	21.219	0.034473								0	0	0	0.85589	1	7168	7168		18.135	1.1927	1				15905	2084	9795	9846	15261	15261					0.01303408886701618
KDTLKLEP	8	Unmodified	_KDTLKLEP_					0	0	0			REV__nc|ENSG00000173575|O14647-2|CHD2	REV__nc|ENSG00000173575|O14647-2|CHD2	MSMS	HCT116MG_D190212_S4	4	472.27532958984375	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.538	1	29.189	28.689	29.689	-0.34921								0	0	0	0.8837	1	10671	10671		13.508	0.97634	1		+		15906	13445	9796	9847	15262	15262					0.06502938211701803
KDTLRKRRYW	10	Unmodified	_KDTLRKRRYW_					0	0	0		PRKD1|p.H442R|1|0.22|ENSG00000184304|chr14:29632936-29632936|T/C|missense_variant	PRKD1|p.H442R|1|0.22|ENSG00000184304|chr14:29632936-29632936|T/C|missense_variant	PRKD1|p.H442R|1|0.22|ENSG00000184304|chr14:29632936-29632936|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	711.4074096679688	2	711.409852	1420.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.083	1	48.718	48.218	49.218	-0.365								0	0	0	0.95507	1	18194	18194		3.5965	0	1				15907	9781	9797	9848	15263	15263					0.11158041493945348
KDTRPKEK	8	Unmodified	_KDTRPKEK_					0	0	0		ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant;ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant;ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12	ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant	ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	501.29022216796875	2	501.290548	1000.56654	0.49076	0.00024602	-0.0017135	-8.5898E-07	0.48905	0.00024516	501.2904648259729	47.011	1.9761	46.641	45.956	47.932	-0.37038					96	53	4	0	0	0	0.86165	1	17159	17159		3.2813	0	1	13843000			15908	135	9798	9849	15264	15264					0.06628261191792717
KDTVQEVTK	9	Unmodified	_KDTVQEVTK_					0	0	0		TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant;nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR	TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant	TICRR|p.P1378Lfs*50|1|0.23|ENSG00000140534|chr15:89624439-89624439|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	524.2892456054688	2	524.287671	1046.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.112	1	22.113	21.613	22.613	0.00074577								0	0	0	0.69648	1	7741	7741		19.257	0	1				15909	3673	9799	9850	15265	15265					0.039371178894725745
KDVAIKQIESE	11	Unmodified	_KDVAIKQIESE_					0	0	0		MAP3K7|p.T169Qfs*3|2|0.21|ENSG00000135341|chr6:90556603-90556603|C/-|frameshift_variant;MAP3K7|p.K209Nfs*14|1|0.31|ENSG00000135341|chr6:90553567-90553567|T/-|frameshift_variant;nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	MAP3K7|p.T169Qfs*3|2|0.21|ENSG00000135341|chr6:90556603-90556603|C/-|frameshift_variant	MAP3K7|p.T169Qfs*3|2|0.21|ENSG00000135341|chr6:90556603-90556603|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	630.3465576171875	2	630.345717	1258.67688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.225	1	25.119	24.619	25.619	-0.10618								0	0	0	0.94269	1	8996	8996		10.151	0.76745	1				15910	3342	9800	9851	15266	15266					0.0578901666949605
KDVAVLPGL	9	Unmodified	_KDVAVLPGL_					0	0	0		ENST00000578618.5_1_18:5398595-5399237:-|nuORF	ENST00000578618.5_1_18:5398595-5399237:-|nuORF	ENST00000578618.5_1_18:5398595-5399237:-|nuORF	MSMS	HCT116MG_D190212_S4	4	456.2816467285156	2	456.28166	910.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.334	1	33.948	33.448	34.448	-0.38558								0	0	0	0.76718	1	12533	12533		10.824	1.4765	1				15911	8941	9801	9852	15267	15267					0.08991545936930834
KDVEEWFNTQM	11	Unmodified	_KDVEEWFNTQM_					0	0	0		CON__A2VCT4	CON__A2VCT4	CON__A2VCT4	MSMS	HCT116MG_D190212_S3	3	713.82080078125	2	713.819009	1425.62347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.057	1	40.755	40.255	41.255	-0.30185								0	0	0	0.94851	1	15262	15262		7.1017	0	1			+	15912	536	9802	9853	15268	15268					-0.07232104104650716
KDVEYEYKMWT	11	Unmodified	_KDVEYEYKMWT_					0	0	0			REV__ENSG00000087502|ENST00000360150|ERGIC2	REV__ENSG00000087502|ENST00000360150|ERGIC2	MSMS	HCT116MG_D190212_S4	4	746.3461303710938	2	746.34486	1490.67517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.175	1	20.965	20.465	21.465	-0.20959								0	0	0	0.95731	1	7294	7294		2.4985	0	1		+		15913	10952	9803	9854	15269	15269					-0.05054360410758818
KDVFRSDL	8	Unmodified	_KDVFRSDL_					0	0	0			REV__GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant	REV__GABRD|p.I415Hfs*14|1|0.24|ENSG00000187730|chr1:2030158-2030159|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	490.26251220703125	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.884	1	33.884	33.384	34.384	0								0	0	0	0.8837	1	12555	12555		11.64	0.81637	1		+		15914	13931	9804	9855	15270	15270					0.023328834091330464
KDVLRKRHK	9	Unmodified	_KDVLRKRHK_					0	0	0		ENST00000557787.1_1_15:89164581-89170043:+|nuORF;ENSG00000181026|ENST00000332810|AEN;nc|ENSG00000181026|Q8WTP8-2|AEN	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	MSMS	HCT116MG_D190212_S1	1	590.3749389648438	2	590.375281	1178.73601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.211	1	45.211	44.711	45.711	0								0	0	0	0.76913	1	17124	17124		3.9444	0.66309	1				15915	5618	9805	9856	15271	15271					0.15379002265035524
KDVLRRMKKRY	11	Unmodified	_KDVLRRMKKRY_					0	0	0		ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	MSMS	HCT116MG_D190212_S3	3	746.9515991210938	2	746.948287	1491.88202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.64	1	47.324	46.824	47.824	-0.31525								0	0	0	0.9598	1	17896	17896		1.1933	0.23107	1				15916	3882	9806	9857	15272	15272					0.155755167187408
KDVSWNEPEQ	10	Unmodified	_KDVSWNEPEQ_					0	0	0		ENST00000366878.8_1_1:223465986-223537415:-|nuORF;ENST00000342943.3_1_1:223533625-223536798:-|nuORF;ENST00000484758.6_1_1:223441989-223537415:-|nuORF;ENST00000343846.7_1_1:223465986-223537047:-|nuORF	ENST00000366878.8_1_1:223465986-223537415:-|nuORF	ENST00000366878.8_1_1:223465986-223537415:-|nuORF	MSMS	HCT116MG_D190212_S1	1	616.2822265625	2	616.283117	1230.55168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.194	1	24.194	23.694	24.694	0								0	0	0	0.91971	1	8650	8650		11.495	0	1				15917	7236	9807	9858	15273	15273					-0.05437275466852043
KDWDYGKWRSS	11	Unmodified	_KDWDYGKWRSS_					0	0	0		ENST00000482590.1_1_2:201726423-201729352:-|nuORF;CLK1|p.D92Efs*7|1|0.06|ENSG00000013441|chr2:200861352-200861353|-/GGTATGAACGTTT|frameshift_variant;nc|ENSG00000013441|P49759-2|CLK1;ENST00000473565.5_1_2:201725957-201729352:-|nuORF;ENST00000481641.1_1_2:201725957-201728949:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1	ENST00000482590.1_1_2:201726423-201729352:-|nuORF	ENST00000482590.1_1_2:201726423-201729352:-|nuORF	MSMS	HCT116MG_D190212_S1	1	714.3388671875	2	714.338758	1426.66296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.293	1	45.293	44.793	45.793	0								0	0	0	0.95273	1	17157	17157		4.897	0	1				15918	479	9808	9859	15274	15274					-0.03330216038921208
KDWFLLRRRRR	11	Unmodified	_KDWFLLRRRRR_					0	0	0			REV__REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant	REV__REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	801.329345703125	2	801.484217	1600.95388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.967	1	29.967	29.467	30.467	0								0	0	0	0.95636	1	10973	10973		2.9952	1.8019	1		+		15919	11107	9809	9860	15275	15275					0.17744192187456065
KDWFLLRRRRR	11	Unmodified	_KDWFLLRRRRR_					0	0	0			REV__REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant	REV__REC8|p.P472Qfs*58|1|0.16|ENSG00000100918|chr14:24179686-24179686|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	801.481689453125	2	801.484217	1600.95388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.258	1	30.258	29.758	30.758	0								0	0	0	0.9598	1	11091	11091		1.1933	0.88631	1		+		15920	11107	9809	9860	15276	15276					0.17744192187456065
KDWKPKRPFFN	11	Unmodified	_KDWKPKRPFFN_					0	0	0			REV__MMP2|p.C349Vfs*72|1|0.45|ENSG00000087245|chr16:55489684-55489684|C/-|frameshift_variant	REV__MMP2|p.C349Vfs*72|1|0.45|ENSG00000087245|chr16:55489684-55489684|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	731.9033203125	2	731.901328	1461.7881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.282	1	31.282	30.782	31.782	0								0	0	0	0.94851	1	11504	11504		7.1017	1.8048	1		+		15921	10946	9810	9861	15277	15277					0.07568120888095109
KDYDYNYYYKT	11	Unmodified	_KDYDYNYYYKT_					0	0	0			REV__tr|U7SSM2|U7SSM2_FUSNUDUF1007domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01500PE=4SV=1	REV__tr|U7SSM2|U7SSM2_FUSNUDUF1007domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01500PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	768.3601684570312	2	768.338089	1534.66163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.537	1	34.151	33.651	34.651	-0.38558								0	0	0	0.95273	1	12615	12615		4.897	2.3985	1		+		15922	17772	9811	9862	15278	15278					-0.08431894918339822
KDYFTDLITNE	11	Unmodified	_KDYFTDLITNE_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;SULF1|p.F343Lfs*7|2|0.2|ENSG00000137573|chr8:69601791-69601791|T/-|frameshift_variant	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	453.1854553222656	3	453.553997	1357.64016	0.074934	3.3987E-05	0.18575	8.4249E-05	0.26069	0.00011824	453.55404766856157	19.959	0.20705	19.584	19.403	19.61	-0.37503					5	3	2	0	0	0	0.36491	1	6955	6955		7.846	5.7621	1	3509000			15923	3489	9812	9863	15279	15279					-0.024352799470534592
KDYFTDLITNE	11	Unmodified	_KDYFTDLITNE_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;SULF1|p.F343Lfs*7|2|0.2|ENSG00000137573|chr8:69601791-69601791|T/-|frameshift_variant	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MULTI-MSMS	HCT116MG_D190212_S3	3	453.55450439453125	3	453.553997	1357.64016	0.16474	7.4718E-05	0.49072	0.00022257	0.65546	0.00029729	453.8885152816669	19.016	0.31208	19.085	18.875	19.187	0.069159					8	5	2	0	0	0	0.71643	1	6501	6501		9.5301	0.77832	1	7608300			15924	3489	9812	9863	15280	15280					-0.024352799470534592
KDYFTDLITNE	11	Unmodified	_KDYFTDLITNE_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;SULF1|p.F343Lfs*7|2|0.2|ENSG00000137573|chr8:69601791-69601791|T/-|frameshift_variant	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MSMS	HCT116MG_D190212_S4	4	453.5541687011719	3	453.553997	1357.64016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.382	1	19.195	18.695	19.695	-0.18674								0	0	0	0.9266	1	6570	6570		10.016	0	1				15925	3489	9812	9863	15281	15281					-0.024352799470534592
KDYHTDEDM	9	Unmodified	_KDYHTDEDM_					0	0	0			REV__STK31|p.K225Nfs*35|1|0.4|ENSG00000196335|chr7:23735722-23735722|A/-|frameshift_variant	REV__STK31|p.K225Nfs*35|1|0.4|ENSG00000196335|chr7:23735722-23735722|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	385.153076171875	3	385.153728	1152.43935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6653	1	2.4008	1.9008	2.9008	-0.26456								0	0	0	0.7701	1	812	812		0.23584	0	1		+		15926	14018	9813	9864	15282	15282					-0.13076872535361872
KDYIERVKRYR	11	Unmodified	_KDYIERVKRYR_					0	0	0			REV__nc|ENSG00000158161|Q99504-2|EYA3	REV__nc|ENSG00000158161|Q99504-2|EYA3	MSMS	HCT116MG_D190212_S1	1	763.4320678710938	2	763.433524	1524.85249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.874	1	46.874	46.374	47.374	0								0	0	0	0.96138	1	17796	17796		1.0715	0	1		+		15927	12774	9814	9865	15283	15283					0.11106275974248092
KDYLEIRDGP	10	Unmodified	_KDYLEIRDGP_					0	0	0		CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant;CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant;CUBN|p.N1904Tfs*7|1|0.22|ENSG00000107611|chr10:16938985-16938985|T/-|frameshift_variant;CUBN|p.P833Lfs*67|2|0.31|ENSG00000107611|chr10:17071555-17071555|A/-|frameshift_variant;CUBN|p.F831Nfs*73|1|0.24|ENSG00000107611|chr10:17071561-17071562|-/TCTTTGAATTT|frameshift_variant;CUBN|p.L906Ffs*6|1|0.32|ENSG00000107611|chr10:17068681-17068681|A/-|frameshift_variant	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	603.314453125	2	603.311677	1204.6088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.137	1	25.776	25.276	26.276	-0.36164								0	0	0	0.83705	1	9443	9443		24.021	4.7636	1				15928	617	9815	9866	15284	15284					0.014681918094993307
KDYYCHQIEEI	11	Unmodified	_KDYYCHQIEEI_					0	0	0			REV__CUBN|p.N1904H|1|0.15|ENSG00000107611|chr10:16938986-16938986|T/G|missense_variant	REV__CUBN|p.N1904H|1|0.15|ENSG00000107611|chr10:16938986-16938986|T/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	720.8262329101562	2	720.826834	1439.63912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.85	1	17.85	17.35	18.35	0								0	0	0	0.95636	1	6101	6101		2.9952	0	1		+		15929	10309	9816	9867	15285	15285					-0.06311817587584301
KEAANILSHVD	11	Unmodified	_KEAANILSHVD_					0	0	0		nc|ENSG00000178852|Q8IY85-2|EFCAB13;ENSG00000178852|ENST00000331493|EFCAB13	nc|ENSG00000178852|Q8IY85-2|EFCAB13	nc|ENSG00000178852|Q8IY85-2|EFCAB13	MULTI-MSMS	HCT116MG_D190212_S4	4	598.8176879882812	2	598.817127	1195.6197	0.88528	0.00053012	-0.2723	-0.00016306	0.61298	0.00036706	598.8169815065098	17.629	0.31141	17.458	17.277	17.588	-0.17047					9	5	2	0	0	0	0.59843	1	5885	5885		35.612	7.1177	1	2749800			15930	5519	9817	9868	15286	15286					0.02971594183804882
KEADYVAQA	9	Unmodified	_KEADYVAQA_					0	0	0		ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	497.74578857421875	2	497.745639	993.476725	0.37149	0.00018491	0.33024	0.00016438	0.70174	0.00034929	497.7458832089218	23.823	0.31387	23.823	23.627	23.941	0					8	5	2	0	0	0	0.071914	1	8518	8518		63.961	22.121	1	6412300			15931	915	9818	9869	15287	15287					-0.020274132074405316
KEADYVAQA	9	Unmodified	_KEADYVAQA_					0	0	0		ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	MSMS	HCT116MG_D190212_S2	2	497.7453918457031	2	497.745639	993.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.326	1	23.946	23.446	24.446	-0.38003								0	0	0	0.59795	1	8712	8712		24.021	0.87215	1				15932	915	9818	9869	15288	15288					-0.020274132074405316
KEADYVAQA	9	Unmodified	_KEADYVAQA_					0	0	0		ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	ENSG00000013583|ENST00000014930|HEBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	497.7462158203125	2	497.745639	993.476725	0.30051	0.00014958	-0.26368	-0.00013125	0.036826	1.833E-05	497.74555071638395	23.878	0.36482	23.817	23.53	23.895	-0.061449					10	6	2	0	0	0	0.045679	1	8441	8441		76.825	31.125	1	6636300			15933	915	9818	9869	15289	15289					-0.020274132074405316
KEAEPEPEP	9	Unmodified	_KEAEPEPEP_					0	0	0		nc|ENSG00000140939|O60936|NOL3;nc|ENSG00000140939|O60936-3|NOL3	nc|ENSG00000140939|O60936|NOL3	nc|ENSG00000140939|O60936|NOL3	MSMS	HCT116MG_D190212_S2	2	513.2427368164062	2	513.242929	1024.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.1	1	20.717	20.217	21.217	-0.38288								0	0	0	0.64498	1	7408	7408		21.747	2.4897	1				15934	9479	9819	9870	15290	15290					-0.03995136789922071
KEAGPERDK	9	Unmodified	_KEAGPERDK_					0	0	0			REV__nc|ENSG00000088881|Q9BQW3-1|EBF4	REV__nc|ENSG00000088881|Q9BQW3-1|EBF4	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2698364257812	2	515.269813	1028.52507	0.09863	5.0821E-05	0.11726	6.042E-05	0.21589	0.00011124	515.2698405664806	15.683	0.31287	15.349	15.168	15.481	-0.33434					14	5	4	0	0	0	0.068828	1	5231	5231		65.474	0.23867	1	9859600	+		15935	17086	9820	9871	15291	15291					0.011950804324669662
KEAGPERDK	9	Unmodified	_KEAGPERDK_					0	0	0			REV__nc|ENSG00000088881|Q9BQW3-1|EBF4	REV__nc|ENSG00000088881|Q9BQW3-1|EBF4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	515.269813	1028.52507	0.41707	0.0002149	0.22385	0.00011534	0.64092	0.00033025	515.2698366060243	15.458	0.20845	15.458	15.327	15.536	0	0.054435	7.7487E-05	NaN	65.474	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3414000	+		15936	17086	9820	9871							0.011950804324669662
KEAHWSRI	8	Unmodified	_KEAHWSRI_					0	0	0			REV__nc|ENSG00000180481|Q4G1C9-4|GLIPR1L2	REV__nc|ENSG00000180481|Q4G1C9-4|GLIPR1L2	MULTI-MSMS	HCT116MG_D190212_S2	2	513.77783203125	2	513.777608	1025.54066	0.10037	5.1566E-05	0.42923	0.00022053	0.52959	0.00027209	513.7777903999013	21.838	0.20807	21.453	21.271	21.479	-0.38503					5	3	2	0	0	0	0.557	1	7713	7713		36.127	0	1	10160000	+		15937	13661	9821	9872	15292	15292					0.02891411740165495
KEAHWSRI	8	Unmodified	_KEAHWSRI_					0	0	0			REV__nc|ENSG00000180481|Q4G1C9-4|GLIPR1L2	REV__nc|ENSG00000180481|Q4G1C9-4|GLIPR1L2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	513.777608	1025.54066	0.10037	5.1566E-05	0.42923	0.00022053	0.52959	0.00027209	513.7777903999013	21.838	0.20807	21.453	21.271	21.479	-0.38503	0	0	NaN	36.127	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10160000	+		15938	13661	9821	9872							0.02891411740165495
KEALGIPAA	9	Unmodified	_KEALGIPAA_					0	0	0		ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	435.2578430175781	2	435.258185	868.501818	0.28787	0.0001253	0.034097	1.4841E-05	0.32197	0.00014014	435.25818538237326	36.225	0.41458	36.097	35.864	36.278	-0.12799					12	7	2	0	0	0	0.023778	1	13547	13547		92.653	7.0118	1	18600000			15939	218	9822	9873	15293	15293					0.062306863857997996
KEALGIPAA	9	Unmodified	_KEALGIPAA_					0	0	0		ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	435.258185	868.501818	-0.11521	-5.0148E-05	0.097414	4.24E-05	-0.017801	-7.7481E-06	435.25808285207626	36.378	0.36407	36.078	35.886	36.25	-0.30056	-0.0097169	2.7141E-05	NaN	92.653	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2513200			15940	218	9822	9873							0.062306863857997996
KEALRKAQV	9	Unmodified	_KEALRKAQV_					0	0	0			REV__RARS2|p.K352Sfs*10|1|0.24|ENSG00000146282|chr6:87520237-87520237|T/-|frameshift_variant	REV__RARS2|p.K352Sfs*10|1|0.24|ENSG00000146282|chr6:87520237-87520237|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	521.8220825195312	2	521.822015	1041.62948	0.379	0.00019777	-0.13074	-6.8223E-05	0.24826	0.00012955	521.8219103008237	15.978	0.15627	15.978	15.9	16.056	0					4	2	2	0	0	0	0.51829	1	5374	5374		15.847	0	1	3321900	+		15941	12483	9823	9874	15294	15294					0.110328269798174
KEAPAPPKA	9	Unmodified	_KEAPAPPKA_					0	0	0		ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	454.763671875	2	454.763635	907.512717	0.15064	6.8506E-05	0.19242	8.7506E-05	0.34306	0.00015601	454.76359884603664	16.815	0.26051	16.815	16.681	16.942	0					11	4	3	0	0	0	0.0034669	1	5686	5686		163.69	7.733	1	18311000			15942	6218	9824	9875	15295	15295					0.05526088760075254
KEAPAPPKA	9	Unmodified	_KEAPAPPKA_					0	0	0		ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	454.763671875	2	454.763635	907.512717	0.13491	6.135E-05	0.15075	6.8556E-05	0.28566	0.00012991	454.76361347844824	17.353	0.47028	17.004	16.821	17.291	-0.34933					21	8	3	0	0	0	0.0015154	1	5893	5893		189.73	21.194	1	69488000			15943	6218	9824	9875	15296	15296					0.05526088760075254
KEAPAPPKA	9	Unmodified	_KEAPAPPKA_					0	0	0		ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	908.5206909179688	1	908.519993	907.512717	0.7054	0.00064087	-0.45151	-0.00041021	0.25388	0.00023066	908.519788674266	17.353	0.26147	17.004	16.873	17.135	-0.34933					8	4	2	0	0	0	0.012343	1	5919	5919		107.56	13.625	1	4141100			15944	6218	9824	9875	15297	15297					0.05526088760075254
KEAPAPPKA	9	Unmodified	_KEAPAPPKA_					0	0	0		ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENSG00000198242|ENST00000422514|RPL23A	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENST00000399247.6_1_6:29694709-29694913:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	454.7632141113281	2	454.763635	907.512717	0.18327	8.3344E-05	0.0053438	2.4302E-06	0.18861	8.5774E-05	454.7635496125479	16.035	0.31197	16.12	15.977	16.289	0.085424					10	5	3	0	0	0	0.0096585	1	5299	5299		114.19	13.478	1	3526600			15945	6218	9824	9875	15298	15298					0.05526088760075254
KEAPAQPAP	9	Unmodified	_KEAPAQPAP_					0	0	0		ENST00000592314.5_1_19:2243417-2246882:+|nuORF;ENST00000592839.6_1_19:2243417-2245742:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	454.7451477050781	2	454.745442	907.476331	-0.2905	-0.00013211	0.58268	0.00026497	0.29218	0.00013287	454.74557372441717	18.502	0.4688	18.139	17.956	18.425	-0.36325					18	8	3	0	0	0	0.0058997	1	6354	6354		129.77	26.419	1	31326000			15946	1966	9825	9876	15299	15299					0.01889211863363016
KEAPAQPAP	9	Unmodified	_KEAPAQPAP_					0	0	0		ENST00000592314.5_1_19:2243417-2246882:+|nuORF;ENST00000592839.6_1_19:2243417-2245742:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	908.4844970703125	1	908.483608	907.476331	0.28363	0.00025768	0.63437	0.00057632	0.91801	0.000834	908.4840673011356	18.502	0.26146	18.139	17.956	18.217	-0.36325					8	4	2	0	0	0	0.0035933	1	6370	6370		176.84	32.487	1	13714000			15947	1966	9825	9876	15300	15300					0.01889211863363016
KEAPAQPAP	9	Unmodified	_KEAPAQPAP_					0	0	0		ENST00000592314.5_1_19:2243417-2246882:+|nuORF;ENST00000592839.6_1_19:2243417-2245742:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	454.74566650390625	2	454.745442	907.476331	-0.068778	-3.1276E-05	0.2976	0.00013533	0.22882	0.00010405	454.74549585059515	17.588	0.52028	17.669	17.482	18.002	0.081358					22	9	4	0	0	0	0.0094709	1	5900	5900		114.65	11.296	1	27127000			15948	1966	9825	9876	15301	15301					0.01889211863363016
KEAPAQPAP	9	Unmodified	_KEAPAQPAP_					0	0	0		ENST00000592314.5_1_19:2243417-2246882:+|nuORF;ENST00000592839.6_1_19:2243417-2245742:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	908.4828491210938	1	908.483608	907.476331	0.35832	0.00032553	0.39918	0.00036265	0.75751	0.00068818	908.4837904079143	17.593	0.31224	17.674	17.534	17.846	0.081356					11	5	3	0	0	0	0.0035933	1	5928	5928		176.84	32.487	1	5462700			15949	1966	9825	9876	15302	15302					0.01889211863363016
KEAPAQPAP	9	Unmodified	_KEAPAQPAP_					0	0	0		ENST00000592314.5_1_19:2243417-2246882:+|nuORF;ENST00000592839.6_1_19:2243417-2245742:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	454.7455749511719	2	454.745442	907.476331	0.055684	2.5322E-05	-0.027699	-1.2596E-05	0.027985	1.2726E-05	454.74543880314366	17.889	0.41585	17.714	17.532	17.948	-0.17501					18	7	3	0	0	0	0.034046	1	5968	5968		82.529	2.933	1	6861300			15950	1966	9825	9876	15303	15303					0.01889211863363016
KEAPAQPAP	9	Unmodified	_KEAPAQPAP_					0	0	0		ENST00000592314.5_1_19:2243417-2246882:+|nuORF;ENST00000592839.6_1_19:2243417-2245742:+|nuORF;SF3A2|p.T267Qfs*179|1|0.62|ENSG00000104897|chr19:2247944-2247944|C/-|frameshift_variant;SF3A2|p.P297Lfs*149|1|0.56|ENSG00000104897|chr19:2248037-2248037|C/-|frameshift_variant;ENSG00000104897|ENST00000221494|SF3A2	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	ENST00000592314.5_1_19:2243417-2246882:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	908.4835815429688	1	908.483608	907.476331	0.51047	0.00046376	-0.021398	-1.944E-05	0.48908	0.00044432	908.4833649810265	17.906	0.31185	17.731	17.532	17.844	-0.17501					7	5	2	0	0	0	0.016744	1	5996	5996		99.755	3.6444	1	1235500			15951	1966	9825	9876	15304	15304					0.01889211863363016
KEAPPMEKP	9	Oxidation (M)	_KEAPPM(Oxidation (M))EKP_		KEAPPM(1)EKP		KEAPPM(130)EKP	0	0	1		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S1	1	521.7656860351562	2	521.765517	1041.51648	0.37436	0.00019533	-0.10824	-5.6475E-05	0.26612	0.00013885	521.7654761788639	16.036	0.9371	16.036	15.64	16.577	0					46	17	4	0	0	0	0.0056012	1	5299	5299		132.38	78.547	1	22476000			15952	2458	9826	9877	15305	15305		47			-0.0026160952838836238
KEAPPMEKP	9	Oxidation (M)	_KEAPPM(Oxidation (M))EKP_		KEAPPM(1)EKP		KEAPPM(120)EKP	0	0	1		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S2	2	521.7656860351562	2	521.765517	1041.51648	0.30259	0.00015788	0.10673	5.5687E-05	0.40932	0.00021357	521.7655039668525	16.463	1.0948	16.121	15.577	16.672	-0.34183					51	20	3	0	0	0	0.0068642	2	5629	5408;5629		121.35	81.254	1	61702000			15953	2458	9826	9877	15306;15307	15307		47			-0.0026160952838836238
KEAPPMEKP	9	Oxidation (M)	_KEAPPM(Oxidation (M))EKP_		KEAPPM(1)EKP		KEAPPM(77)EKP	0	0	1		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S3	3	521.7656860351562	2	521.765517	1041.51648	0.32925	0.00017179	-0.17671	-9.22E-05	0.15254	7.959E-05	521.7654563982753	15.212	1.0408	15.295	14.778	15.819	0.083271					47	19	4	0	0	0	0.045223	2	4848	4848;5081		77.049	49.42	1	7789600			15954	2458	9826	9877	15308;15309	15308		47			-0.0026160952838836238
KEAPPMEKP	9	Unmodified	_KEAPPMEKP_					0	0	0		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S1	1	513.7682495117188	2	513.76806	1025.52157	0.39522	0.00020305	-0.028896	-1.4846E-05	0.36632	0.0001882	513.767981790797	20.04	1.0442	20.04	19.443	20.488	0					62	19	5	0	0	0	9.4614E-05	2	7069	6841;7069		200.32	137.75	1	92441000			15955	2458	9826	9878	15310;15311	15311					0.00982694334243206
KEAPPMEKP	9	Unmodified	_KEAPPMEKP_					0	0	0		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7681274414062	2	513.76806	1025.52157	0.22215	0.00011413	0.063394	3.257E-05	0.28554	0.0001467	513.7680907924673	20.731	1.3602	20.351	19.553	20.913	-0.37949					83	25	4	0	0	0	6.2752E-07	2	7308	7075;7308		216.42	148.34	1	565280000			15956	2458	9826	9878	15312;15313	15313					0.00982694334243206
KEAPPMEKP	9	Unmodified	_KEAPPMEKP_					0	0	0		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S2	2	1026.5301513671875	1	1026.52884	1025.52157	0.51294	0.00052654	0.11477	0.00011781	0.6277	0.00064435	1026.5289244828598	20.747	0.73671	20.368	19.917	20.654	-0.37949					28	13	3	0	0	0	0.0034538	1	7219	7219		162.31	66.03	1	21386000			15957	2458	9826	9878	15314	15314					0.00982694334243206
KEAPPMEKP	9	Unmodified	_KEAPPMEKP_					0	0	0		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S3	3	513.76806640625	2	513.76806	1025.52157	0.17204	8.8389E-05	0.14562	7.4815E-05	0.31766	0.0001632	513.7680711446743	19.767	1.3018	19.827	19.178	20.479	0.05983					79	24	4	0	0	0	0.0034538	3	6862	6634;6728;6862		162.31	100.96	1	93818000			15958	2458	9826	9878	15315;15316;15317	15317					0.00982694334243206
KEAPPMEKP	9	Unmodified	_KEAPPMEKP_					0	0	0		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	HCT116MG_D190212_S4	4	514.26953125	2	513.76806	1025.52157	0.24312	0.00012491	0.032392	1.6642E-05	0.27551	0.00014155	513.7679945488011	20.112	1.1858	19.918	19.382	20.568	-0.19367					50	22	3	0	0	0	0.021544	2	6782	6782;7012		94.909	51.05	1	15308000			15959	2458	9826	9878	15318;15319	15318					0.00982694334243206
KEAPWEYQ	8	Unmodified	_KEAPWEYQ_					0	0	0		ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	MULTI-SECPEP	HCT116MG_D190212_S2	2	525.2601928710938	2	525.748182	1049.48181	0.41422	0.00021777	-1.2449	-0.00065449	-0.83067	-0.00043672	525.7471790412804	20.633	0.42141	20.254	20.076	20.498	-0.37949					10	7	2	0	0	0	0.26781	1	7186	7186		27.629	0	1	2938800			15960	2876	9827	9879	15320	15320					-0.04095109344825687
KEATYGERVVA	11	Unmodified	_KEATYGERVVA_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000462343.1_1_2:10266966-10267371:+|nuORF;ENST00000426279.1_1_X:44168653-44169127:-|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S1	1	611.8255615234375	2	611.824952	1221.63535	0.5393	0.00032995	0.7337	0.00044889	1.273	0.00077885	611.8256101443544	24.068	0.26115	24.068	23.889	24.15	0					9	4	3	0	0	0	0.01735	1	8604	8604		133.12	69.897	1	11187000			15961	5216	9828	9880	15321	15321					0.03339880700855247
KEATYGERVVA	11	Unmodified	_KEATYGERVVA_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000462343.1_1_2:10266966-10267371:+|nuORF;ENST00000426279.1_1_X:44168653-44169127:-|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S2	2	611.8251342773438	2	611.824952	1221.63535	0.56267	0.00034426	-0.28036	-0.00017153	0.28231	0.00017272	611.824890884756	24.596	0.36516	24.216	23.979	24.344	-0.38003					16	6	4	0	0	0	0.010622	1	8820	8820		136.86	65.156	1	86554000			15962	5216	9828	9880	15322	15322					0.03339880700855247
KEATYGERVVA	11	Unmodified	_KEATYGERVVA_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000462343.1_1_2:10266966-10267371:+|nuORF;ENST00000426279.1_1_X:44168653-44169127:-|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MSMS	HCT116MG_D190212_S2	2	408.2188415527344	3	408.21906	1221.63535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.653	1	24.273	23.773	24.773	-0.38003								0	0	0	0.51036	1	8843	8843		40.093	27.865	1				15963	5216	9828	9880	15323	15323					0.03339880700855247
KEATYGERVVA	11	Unmodified	_KEATYGERVVA_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000462343.1_1_2:10266966-10267371:+|nuORF;ENST00000426279.1_1_X:44168653-44169127:-|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S3	3	611.8250732421875	2	611.824952	1221.63535	0.31507	0.00019277	-0.11663	-7.136E-05	0.19844	0.00012141	611.8249617872036	24.071	0.31261	24.01	23.843	24.155	-0.061449					10	5	3	0	0	0	0.03857	1	8541	8541		119.6	60.234	1	9233600			15964	5216	9828	9880	15324	15324					0.03339880700855247
KEATYGERVVA	11	Unmodified	_KEATYGERVVA_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000462343.1_1_2:10266966-10267371:+|nuORF;ENST00000426279.1_1_X:44168653-44169127:-|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S4	4	611.8252563476562	2	611.824952	1221.63535	0.99039	0.00060594	-1.1074	-0.00067753	-0.11701	-7.1587E-05	611.8245766246199	24.39	0.20768	24.121	23.978	24.186	-0.26881					5	3	2	0	0	0	0.73618	1	8616	8616		8.4443	2.2385	1	2093100			15965	5216	9828	9880	15325	15325					0.03339880700855247
KEAVDKYKE	9	Unmodified	_KEAVDKYKE_					0	0	0		tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	tr|U7SG92|U7SG92_FUSNUExonucleaseSbcCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02225PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	555.2966918945312	2	555.295496	1108.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.112	1	29.112	28.612	29.612	0								0	0	0	0.7663	1	10628	10628		13.906	1.3745	1				15966	18296	9829	9881	15326	15326					0.026494044065202615
KEAVTTIAA	9	Unmodified	_KEAVTTIAA_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	452.26092529296875	2	452.260925	902.507297	0.070054	3.1683E-05	0.17728	8.0176E-05	0.24733	0.00011186	452.26086852920014	27.256	0.26046	27.256	27.125	27.386	0					9	4	3	0	0	0	0.053544	1	9887	9887		72.968	11.61	1	35671000			15967	3004	9830	9882	15327	15327					0.052143651776077604
KEAVTTIAA	9	Unmodified	_KEAVTTIAA_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	452.26092529296875	2	452.260925	902.507297	0.16052	7.2598E-05	0.1276	5.7709E-05	0.28812	0.00013031	452.26088969428406	27.714	0.30929	27.372	27.191	27.5	-0.34201					15	5	4	0	0	0	0.034046	1	10079	10079		82.529	14.449	1	110370000			15968	3004	9830	9882	15328	15328					0.052143651776077604
KEAVTTIAA	9	Unmodified	_KEAVTTIAA_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	903.5148315429688	1	903.514573	902.507297	0.87346	0.00078919	-0.21715	-0.0001962	0.65631	0.00059299	903.5141164835704	27.7	0.25844	27.358	27.191	27.449	-0.34201					8	4	3	0	0	0	0.053544	1	10085	10085		72.968	11.61	1	31401000			15969	3004	9830	9882	15329	15329					0.052143651776077604
KEAVTTIAA	9	Unmodified	_KEAVTTIAA_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	452.2608947753906	2	452.260925	902.507297	0.30583	0.00013831	-0.014693	-6.6452E-06	0.29114	0.00013167	452.2608195928812	27.57	0.36414	27.382	27.153	27.517	-0.18847					17	6	4	0	0	0	0.053544	1	9923	9923		72.968	10.395	1	42956000			15970	3004	9830	9882	15330	15330					0.052143651776077604
KEAVTTIAA	9	Unmodified	_KEAVTTIAA_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	903.5158081054688	1	903.514573	902.507297	0.90058	0.00081369	0.09739	8.7994E-05	0.99797	0.00090168	903.514744014678	27.536	0.26011	27.348	27.205	27.465	-0.18847					8	4	3	0	0	0	0.053544	1	9944	9944		72.968	11.61	1	6542100			15971	3004	9830	9882	15331	15331					0.052143651776077604
KEAVTTIAA	9	Unmodified	_KEAVTTIAA_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	452.26092529296875	2	452.260925	902.507297	0.35265	0.00015949	-0.40608	-0.00018365	-0.05343	-2.4164E-05	452.2606930589275	27.746	0.25017	27.424	27.304	27.554	-0.32157					10	4	3	0	0	0	0.053544	1	9949	9949		72.968	18.194	1	12361000			15972	3004	9830	9882	15332	15332					0.052143651776077604
KECGKAFSA	9	Carbamidomethyl (C)	_KEC(Carbamidomethyl (C))GKAFSA_	KEC(1)GKAFSA		KEC(55)GKAFSA		0	1	0		ENST00000467807.5_1_19:56888615-56889338:+|nuORF;nc|ENSG00000235109|Q96LW9-2|ZSCAN31;ENSG00000235109|ENST00000344279|ZSCAN31	ENST00000467807.5_1_19:56888615-56889338:+|nuORF	ENST00000467807.5_1_19:56888615-56889338:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	499.2423095703125	2	499.242209	996.469866	0.25331	0.00012646	-0.17746	-8.8595E-05	0.075847	3.7866E-05	499.2421726946843	19.574	0.15639	19.574	19.443	19.6	0					4	2	2	0	0	0	0.11491	1	6805	6805		55.249	10.857	1	4175700			15973	6525	9831	9883	15333	15333	39				-0.028510493596513697
KECGKAFSA	9	Carbamidomethyl (C)	_KEC(Carbamidomethyl (C))GKAFSA_	KEC(1)GKAFSA		KEC(120)GKAFSA		0	1	0		ENST00000467807.5_1_19:56888615-56889338:+|nuORF;nc|ENSG00000235109|Q96LW9-2|ZSCAN31;ENSG00000235109|ENST00000344279|ZSCAN31	ENST00000467807.5_1_19:56888615-56889338:+|nuORF	ENST00000467807.5_1_19:56888615-56889338:+|nuORF	MSMS	HCT116MG_D190212_S2	2	499.2420349121094	2	499.242209	996.469866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.331	1	19.951	19.451	20.451	-0.37949								0	0	0	0.0046979	1	7100	7100		117.84	14.014	1				15974	6525	9831	9883	15334	15334	39				-0.028510493596513697
KEDCQIPEY	9	Unmodified	_KEDCQIPEY_					0	0	0		tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	tr|U7SZZ9|U7SZZ9_FUSNUGalactose-1-phosphateuridylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=galTPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	563.3048706054688	2	562.750064	1123.48558	0.33275	0.00018725	2.8851	0.0016236	3.2178	0.0018108	562.7517997979986	18.084	0.20867	17.728	17.65	17.858	-0.35647					5	3	2	0	0	0	0.58135	1	6170	6170		12.241	2.8575	1	3474900			15975	18542	9832	9884	15335	15335					-0.07122807633254524
KEDEENTS	8	Unmodified	_KEDEENTS_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	476.1984558105469	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.883	1	13.721	13.221	14.221	-0.16233								0	0	0	0.8837	1	4373	4373		0.6015	0	1				15976	1256	9833	9885	15336	15336					-0.09429177100378183
KEDFRRETA	9	Unmodified	_KEDFRRETA_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S2	2	576.2939453125	2	576.293819	1150.57309	0.36673	0.00021134	0.12991	7.4864E-05	0.49663	0.00028621	576.2938444628682	17.771	0.31341	17.414	17.284	17.597	-0.35647					11	5	3	0	0	0	0.035298	1	6069	6069		81.915	43.941	1	25046000			15977	1680	9834	9886	15337	15337					0.003821543525418747
KEDFRRETA	9	Unmodified	_KEDFRRETA_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S2	2	384.53143310546875	3	384.531638	1150.57309	-0.069475	-2.6715E-05	0.13112	5.0422E-05	0.061649	2.3706E-05	384.53161170306095	17.767	0.20885	17.41	17.284	17.493	-0.35647					7	3	3	0	0	0	0.16306	1	6078	6078		35.612	12.837	1	9008800			15978	1680	9834	9886	15338	15338					0.003821543525418747
KEDGEFWMELR	11	Unmodified	_KEDGEFWMELR_					0	0	0		CAPN12|p.A409Lfs*30|1|0.35|ENSG00000182472|chr19:38737293-38737293|C/-|frameshift_variant;ENSG00000182472|ENST00000328867|CAPN12	CAPN12|p.A409Lfs*30|1|0.35|ENSG00000182472|chr19:38737293-38737293|C/-|frameshift_variant	CAPN12|p.A409Lfs*30|1|0.35|ENSG00000182472|chr19:38737293-38737293|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	720.336669921875	2	720.334827	1438.6551	0.75586	0.00054447	1.3976	0.0010068	2.1535	0.0015512	720.3359878782999	30.084	0.36402	29.727	29.545	29.909	-0.3571					10	6	3	0	0	0	0.70059	1	10922	10922		21.59	4.4773	1	5043200			15979	321	9835	9887	15339	15339					-0.046681113507247574
KEDGEFWMELR	11	Unmodified	_KEDGEFWMELR_					0	0	0		CAPN12|p.A409Lfs*30|1|0.35|ENSG00000182472|chr19:38737293-38737293|C/-|frameshift_variant;ENSG00000182472|ENST00000328867|CAPN12	CAPN12|p.A409Lfs*30|1|0.35|ENSG00000182472|chr19:38737293-38737293|C/-|frameshift_variant	CAPN12|p.A409Lfs*30|1|0.35|ENSG00000182472|chr19:38737293-38737293|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	720.334827	1438.6551	0.75586	0.00054447	1.3976	0.0010068	2.1535	0.0015512	720.3359878782999	30.084	0.36402	29.727	29.545	29.909	-0.3571	-0.010915	-0.00082353	NaN	21.59	10	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5043200			15980	321	9835	9887							-0.046681113507247574
KEDKPPLAP	9	Unmodified	_KEDKPPLAP_					0	0	0		ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|2|0.29|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000432006.1_1_7:16624422-16624878:-|nuORF	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	497.7815246582031	2	497.782025	993.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.303	1	26.303	25.803	26.803	0								0	0	0	0.34992	1	9498	9498		36.506	8.0117	1				15981	234	9836	9888	15340	15340					0.05246340585995313
KEDKPPLAP	9	Unmodified	_KEDKPPLAP_					0	0	0		ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|2|0.29|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000432006.1_1_7:16624422-16624878:-|nuORF	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	497.78173828125	2	497.782025	993.549496	0.36968	0.00018402	0.24103	0.00011998	0.61071	0.000304	497.78203732528084	26.485	0.88324	26.123	25.557	26.441	-0.36164					31	16	2	0	0	0	0.20983	1	9506	9506		40.239	0	1	22710000			15982	234	9836	9888	15341	15341					0.05246340585995313
KEDKPPLAP	9	Unmodified	_KEDKPPLAP_					0	0	0		ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|2|0.29|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000432006.1_1_7:16624422-16624878:-|nuORF	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	497.7826232910156	2	497.782025	993.549496	0.49119	0.00024451	-0.24302	-0.00012097	0.24817	0.00012354	497.78192204419435	26.17	1.0421	26.042	25.338	26.38	-0.12795					25	19	2	0	0	0	0.17423	1	9342	9342		43.982	5.8063	1	5613400			15983	234	9836	9888	15342	15342					0.05246340585995313
KEDLSWART	9	Unmodified	_KEDLSWART_					0	0	0		ENSG00000113638|ENST00000337702|TTC33;ENST00000511730.2_1_5:40716249-40756023:-|nuORF;TTC33|p.S187Vfs*7|1|0.35|ENSG00000113638|chr5:40716375-40716375|T/-|frameshift_variant	ENSG00000113638|ENST00000337702|TTC33	ENSG00000113638|ENST00000337702|TTC33	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2857666015625	2	553.285463	1104.55637	0.46146	0.00025532	0.56404	0.00031208	1.0255	0.0005674	553.2857945108019	32.824	0.20676	32.612	32.482	32.688	-0.21135					6	3	2	0	0	0	0.13424	1	12172	12172		51.415	3.6665	1	28762000			15984	2398	9837	9889	15343	15343					0.008276534665583313
KEDYRRERWRK	11	Unmodified	_KEDYRRERWRK_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2;CWF19L2|p.N326Ifs*19|1|0.46|ENSG00000152404|chr11:107429255-107429255|T/-|frameshift_variant;CWF19L2|p.E467Rfs*17|1|0.29|ENSG00000152404|chr11:107428833-107428834|-/T|frameshift_variant;CWF19L2|p.E467Nfs*22|1|0.26|ENSG00000152404|chr11:107428834-107428834|T/-|frameshift_variant;CWF19L2|p.A661Lfs*32|1|0.08|ENSG00000152404|chr11:107353629-107353629|T/-|frameshift_variant;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;CWF19L2|p.L754Wfs*5|1|0.36|ENSG00000152404|chr11:107336655-107336655|A/-|frameshift_variant;ENSG00000152404|ENST00000282251|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MSMS	HCT116MG_D190212_S1	1	811.4335327148438	2	811.437129	1620.85971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.834	1	32.834	32.334	33.334	0								0	0	0	0.9598	1	12130	12130		1.1933	0.9575	1				15985	9501	9838	9890	15344	15344					0.07411008574672451
KEEAQQKEA	9	Unmodified	_KEEAQQKEA_					0	0	0		DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;DMD|p.L2185Wfs*4|1|0.05|ENSG00000198947|chrX:31968399-31968399|A/-|frameshift_variant;DMD|p.K2329Sfs*9|1|0.33|ENSG00000198947|chrX:31875300-31875300|T/-|frameshift_variant;DMD|p.K1238Rfs*6|3|0.28|ENSG00000198947|chrX:32448529-32448529|T/-|frameshift_variant	DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant	DMD|p.L3485*|2|0.35|ENSG00000198947|chrX:31169543-31169543|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	530.7728881835938	2	530.767103	1059.51965	0.40711	0.00021608	0.36427	0.00019334	0.77139	0.00040943	530.7673622869162	20.029	0.46889	20.077	19.738	20.207	0.048107					13	8	3	0	0	0	0.21838	1	6786	6786		20.454	6.5476	1	8026100			15986	690	9839	9891	15345	15345					-0.007726431500032049
KEEDFKRMTA	10	Unmodified	_KEEDFKRMTA_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S3	3	418.8763122558594	3	418.876417	1253.60742	0.00067241	2.8165E-07	0.31102	0.00013028	0.31169	0.00013056	418.87635056990496	22.992	0.20798	22.973	22.844	23.051	-0.018869					5	3	2	0	0	0	0.81789	1	8123	8123		10.527	1.7757	1	6437000			15987	2235	9840	9892	15346	15346					-0.009237655508741227
KEEEEETP	8	Unmodified	_KEEEEETP_					0	0	0		nc|ENSG00000105486|P18858-3|LIG1;LIG1|p.E153K|1|0.44|ENSG00000105486|chr19:48153881-48153881|C/T|missense_variant;DRC1|p.S616P|1|0.38|ENSG00000157856|chr2:26453476-26453476|T/C|missense_variant;DRC1|p.W618Gfs*19|1|0.36|ENSG00000157856|chr2:26453477-26453477|C/-|frameshift_variant;ENSG00000157856|ENST00000288710|DRC1	nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-3|LIG1	MULTI-MSMS	HCT116MG_D190212_S4	4	495.7160339355469	2	495.716744	989.418936	0.29088	0.00014419	-0.90256	-0.00044742	-0.61169	-0.00030322	495.7162760295429	18.807	0.46786	18.626	18.304	18.771	-0.18051					13	8	2	0	0	0	0.7524	1	6321	6321		16.942	0	1	2989600			15988	9413	9841	9893	15347	15347					-0.07619719923502544
KEEEKLEWELR	11	Unmodified	_KEEEKLEWELR_					0	0	0			REV__ENSG00000117614|ENST00000236273|SYF2	REV__ENSG00000117614|ENST00000236273|SYF2	MSMS	HCT116MG_D190212_S3	3	744.8908081054688	2	744.888281	1487.76201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.145	1	57.875	57.375	58.375	-0.26932								0	0	0	0.94755	1	22112	22112		7.609	1.4032	1		+		15989	11620	9842	9894	15348	15348					0.0376376213534968
KEEFWKFKELL	11	Unmodified	_KEEFWKFKELL_					0	0	0		NLRP9|p.K264Rfs*12|3|0.33|ENSG00000185792|chr19:55733040-55733040|T/-|frameshift_variant;NLRP9|p.M265Dfs*36|2|0.39|ENSG00000185792|chr19:55733039-55733040|-/T|frameshift_variant;nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	NLRP9|p.K264Rfs*12|3|0.33|ENSG00000185792|chr19:55733040-55733040|T/-|frameshift_variant	NLRP9|p.K264Rfs*12|3|0.33|ENSG00000185792|chr19:55733040-55733040|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	748.9129638671875	2	748.911027	1495.8075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.987	1	47.671	47.171	48.171	-0.31596								0	0	0	0.95731	1	18036	18036		2.4985	1.0166	1				15990	5846	9843	9895	15349	15349					0.07943032388379834
KEEKSFPI	8	Unmodified	_KEEKSFPI_					0	0	0		GCNT4|p.S136F|1|0.44|ENSG00000176928|chr5:75029631-75029631|G/A|missense_variant;ENSG00000176928|ENST00000652361|GCNT4	GCNT4|p.S136F|1|0.44|ENSG00000176928|chr5:75029631-75029631|G/A|missense_variant	GCNT4|p.S136F|1|0.44|ENSG00000176928|chr5:75029631-75029631|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	489.24188232421875	2	489.26875	976.522947	0.29563	0.00014464	0.68045	0.00033292	0.97608	0.00047756	489.26895535933426	51.684	0.20507	51.501	51.373	51.578	-0.18369					5	3	2	0	0	0	0.31449	1	19820	19820		15.847	0	1	10709000			15991	5442	9844	9896	15350	15350					0.03374651694673503
KEEPVIKKPV	10	Unmodified	_KEEPVIKKPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	583.8592529296875	2	583.860806	1165.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.01	1	52.673	52.173	53.173	-0.33697								0	0	0	0.95507	1	19779	19779		3.5965	0.31518	1		+		15992	12706	9845	9897	15351	15351					0.1308342012534922
KEERKKRRVLR	11	Unmodified	_KEERKKRRVLR_					0	0	0			REV__ENST00000457010.6_2_16:31474132-31475725:+|nuORF	REV__ENST00000457010.6_2_16:31474132-31475725:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	499.9869384765625	3	499.986464	1496.93756	0.28199	0.00014099	0.71355	0.00035676	0.99553	0.00049775	499.98698208394075	61.149	1.5554	61.149	60.952	62.508	0					39	29	2	0	0	0	0.74191	1	23620	23620		0.094841	0.011491	1	7568400	+		15993	15754	9846	9898	15352	15352					0.2089706623071379
KEESKETP	8	Unmodified	_KEESKETP_					0	0	0		MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant;MAP2|p.T1474Nfs*22|1|0.33|ENSG00000078018|chr2:209696942-209696943|-/A|frameshift_variant;nc|ENSG00000078018|P11137-3|MAP2;ENSG00000078018|ENST00000682079|MAP2	MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	474.23779296875	2	474.237647	946.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.697	1	15.697	15.197	16.197	0								0	0	0	0.8837	1	5233	5233		14.582	0	1				15994	1356	9847	9899	15353	15353					-0.014631194443268214
KEESLLVLGW	10	Unmodified	_KEESLLVLGW_					0	0	0			REV__WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant	REV__WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	587.3282470703125	2	587.329339	1172.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.498	1	42.428	41.928	42.928	-0.069984								0	0	0	0.76907	1	16087	16087		32.786	2.9451	1		+		15995	10696	9848	9900	15354	15354					0.06470854337317178
KEEVTELLA	9	Unmodified	_KEEVTELLA_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MSMS	HCT116MG_D190212_S3	3	516.2844848632812	2	516.284597	1030.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.82	1	42.515	42.015	43.015	-0.30472								0	0	0	0.47756	1	15963	15963		29.841	3.5724	1				15996	1643	9849	9901	15355	15355					0.04058599657969353
KEEWFRRFILA	11	Unmodified	_KEEWFRRFILA_					0	0	0		TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant;TEX2|p.S903Vfs*17|1|0.22|ENSG00000136478|chr17:64160898-64160899|-/C|frameshift_variant;ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2	TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant	TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	747.91357421875	2	747.914436	1493.81432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.028	1	47.712	47.212	48.212	-0.31596								0	0	0	0.95731	1	18052	18052		2.4985	1.0166	1				15997	3417	9850	9902	15356	15356					0.08716390059612422
KEFDHPHVA	9	Unmodified	_KEFDHPHVA_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-MSMS	HCT116MG_D190212_S1	1	540.2674560546875	2	540.267073	1078.51959	0.65684	0.00035487	0.2947	0.00015922	0.95154	0.00051409	540.267268419417	20.774	0.20852	20.774	20.644	20.852	0					6	3	2	0	0	0	0.035349	1	7294	7294		81.89	56.491	1	2638900			15998	1584	9851	9903	15357	15357					-0.01652598359351032
KEFDHPHVA	9	Unmodified	_KEFDHPHVA_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-MSMS	HCT116MG_D190212_S2	2	540.2675170898438	2	540.267073	1078.51959	0.40635	0.00021954	0.35704	0.0001929	0.7634	0.00041244	540.2673239885587	21.419	0.20725	21.036	20.91	21.117	-0.38288					9	3	3	0	0	0	0.0040527	1	7552	7552		149.91	108.07	1	24407000			15999	1584	9851	9903	15358	15358					-0.01652598359351032
KEFDHPHVA	9	Unmodified	_KEFDHPHVA_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-MSMS	HCT116MG_D190212_S2	2	360.51373291015625	3	360.513807	1078.51959	-0.25247	-9.1019E-05	-0.10105	-3.6429E-05	-0.35352	-0.00012745	360.5137653032383	21.422	0.20725	21.039	20.91	21.117	-0.38288					6	3	2	0	0	0	0.14171	1	7554	7554		38.615	19.253	1	18213000			16000	1584	9851	9903	15359	15359					-0.01652598359351032
KEFDHPHVA	9	Unmodified	_KEFDHPHVA_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-MSMS	HCT116MG_D190212_S3	3	360.51385498046875	3	360.513807	1078.51959	-0.21423	-7.7233E-05	0.44286	0.00015966	0.22863	8.2426E-05	360.5139510159216	20.544	0.26031	20.578	20.454	20.714	0.034473					9	4	3	0	0	0	0.32155	1	7123	7123		28.495	16.254	1	5314500			16001	1584	9851	9903	15360	15360					-0.01652598359351032
KEFKVEVY	8	Unmodified	_KEFKVEVY_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-MSMS	HCT116MG_D190212_S2	2	521.28466796875	2	521.2844	1040.55425	0.40128	0.00020918	0.79033	0.00041199	1.1916	0.00062117	521.284369832549	35.016	0.31111	34.858	34.709	35.02	-0.15834					7	5	2	0	0	0	0.1105	1	13070	13070		92.653	40.385	1	16028000			16002	2973;9450	9852	9904	15361	15361					0.0355922472876955
KEFKVEVY	8	Unmodified	_KEFKVEVY_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MSMS	HCT116MG_D190212_S3	3	521.2845458984375	2	521.2844	1040.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.311	1	35.012	34.512	35.512	-0.29922								0	0	0	0.22842	1	13029	13029		63.961	15.615	1				16003	2973;9450	9852	9904	15362	15362					0.0355922472876955
KEFKVEVY	8	Unmodified	_KEFKVEVY_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MSMS	HCT116MG_D190212_S4	4	521.2844848632812	2	521.2844	1040.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.393	1	35.007	34.507	35.507	-0.38606								0	0	0	0.10614	1	12961	12961		82.529	25.058	1				16004	2973;9450	9852	9904	15363	15363					0.0355922472876955
KEFKVEVY	8	Unmodified	_KEFKVEVY_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	521.2844	1040.55425	0.50326	0.00026234	-0.17119	-8.9238E-05	0.33207	0.0001731	521.2841759806248	35.263	0.20783	34.964	34.801	35.009	-0.29922	0.053005	-7.2895E-05	NaN	92.653	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8102400			16005	2973;9450	9852	9904							0.0355922472876955
KEFLKRNQYK	10	Unmodified	_KEFLKRNQYK_					0	0	0		HELQ|p.F782Lfs*9|1|0.13|ENSG00000163312|chr4:83429696-83429696|A/-|frameshift_variant;HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant;ENSG00000163312|ENST00000295488|HELQ	HELQ|p.F782Lfs*9|1|0.13|ENSG00000163312|chr4:83429696-83429696|A/-|frameshift_variant	HELQ|p.F782Lfs*9|1|0.13|ENSG00000163312|chr4:83429696-83429696|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	677.3877563476562	2	677.385511	1352.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.556	1	51.244	50.744	51.744	-0.31166								0	0	0	0.91638	1	19469	19469		12.241	0	1				16006	4590	9853	9905	15364	15364					0.0942012813418387
KEFLPSRSGP	10	Unmodified	_KEFLPSRSGP_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MSMS	HCT116MG_D190212_S1	1	559.3037719726562	2	559.303655	1116.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.192	1	16.192	15.692	16.692	0								0	0	0	0.94107	1	5432	5432		6.7232	0	1				16007	1613	9854	9906	15365	15365					0.03912530363299993
KEFNHNYRIRY	11	Unmodified	_KEFNHNYRIRY_					0	0	0		CFHR5|p.S353Y|1|0.12|ENSG00000134389|chr1:196998215-196998215|C/A|missense_variant	CFHR5|p.S353Y|1|0.12|ENSG00000134389|chr1:196998215-196998215|C/A|missense_variant	CFHR5|p.S353Y|1|0.12|ENSG00000134389|chr1:196998215-196998215|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	770.3935546875	2	770.394399	1538.77424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.019	1	57.745	57.245	58.245	-0.27434								0	0	0	0.95273	1	22062	22062		4.897	1.9018	1				16008	419	9855	9907	15366	15366					0.026408433890310334
KEFVSEVDV	9	Unmodified	_KEFVSEVDV_					0	0	0		ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	MSMS	HCT116MG_D190212_S1	1	351.1889953613281	3	351.181723	1050.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.246	1	17.246	16.746	17.746	0								0	0	0	0.76718	1	5857	5857		7.1017	0.37856	1				16009	5378	9856	9908	15367	15367					0.00010026623863268469
KEFYQFPRYWW	11	Unmodified	_KEFYQFPRYWW_					0	0	0			REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	MSMS	HCT116MG_D190212_S4	4	550.6038818359375	3	550.601504	1648.78268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.613	1	20.412	19.912	20.912	-0.20133								0	0	0	0.9598	1	7067	7067		0.40827	0	1		+		16010	14174	9857	9909	15368	15368					-0.015756026943563484
KEGMNIVEA	9	Unmodified	_KEGMNIVEA_					0	0	0		ENST00000420099.1_1_13:91924337-91924628:-|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000454070.2_1_1:101736433-101736811:-|nuORF;ENSG00000196262|ENST00000468812|PPIA;ENST00000567559.1_1_16:77926680-77926809:+|nuORF;ENST00000449839.1_1_19:12618945-12619074:+|nuORF;ENST00000567565.3_1_15:76039466-76039598:+|nuORF;ENST00000562009.1_1_15:74654250-74654382:+|nuORF;ENST00000418508.1_1_2:130254157-130254292:+|nuORF;ENST00000550612.1_1_12:31014923-31015109:+|nuORF;ENST00000435399.1_1_1:45880815-45881013:+|nuORF;ENST00000585753.1_1_19:30412142-30412556:+|nuORF;ENST00000440938.1_1_2:174350595-174351021:-|nuORF	ENST00000420099.1_1_13:91924337-91924628:-|nuORF	ENST00000420099.1_1_13:91924337-91924628:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	495.7502746582031	2	495.749867	989.485181	0.62162	0.00030817	0.026826	1.3299E-05	0.64845	0.00032147	495.74963321022545	33.082	0.2084	32.871	32.792	33	-0.21135					5	3	2	0	0	0	0.16306	1	12303	12303		45.7	1.9272	1	17110000			16011	6056	9858	9910	15369	15369					-0.009981825624663543
KEGTHLRHHY	10	Unmodified	_KEGTHLRHHY_					0	0	0			REV__ZNF845|p.R430H|1|0.09|ENSG00000213799|chr19:53351964-53351964|G/A|missense_variant	REV__ZNF845|p.R430H|1|0.09|ENSG00000213799|chr19:53351964-53351964|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	639.3282470703125	2	639.328528	1276.6425	0.81854	0.00052332	-1.6733	-0.0010698	-0.85476	-0.00054647	639.3276262262674	31.448	0.67694	31.448	31.023	31.7	0					18	12	2	0	0	0	0.8392	1	11506	11506		8.7454	0.3011	1	3845300	+		16012	13739	9859	9911	15370	15370					0.015246580919438202
KEGTHLRHHY	10	Unmodified	_KEGTHLRHHY_					0	0	0			REV__ZNF845|p.R430H|1|0.09|ENSG00000213799|chr19:53351964-53351964|G/A|missense_variant	REV__ZNF845|p.R430H|1|0.09|ENSG00000213799|chr19:53351964-53351964|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	639.32861328125	2	639.328528	1276.6425	0.49181	0.00031443	-0.57101	-0.00036506	-0.079201	-5.0635E-05	639.3279928602392	32.718	0.41536	32.338	32.105	32.52	-0.37924					10	7	2	0	0	0	0.7974	1	11904	11904		12.241	0	1	1613200	+		16013	13739	9859	9911	15371	15371					0.015246580919438202
KEHEEFQITA	10	Unmodified	_KEHEEFQITA_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	616.3014526367188	2	616.30131	1230.58807	0.51082	0.00031482	0.37929	0.00023376	0.89011	0.00054857	616.3014469867	33.841	0.2612	33.841	33.711	33.972	0					9	4	3	0	0	0	0.7399	1	12550	12550		24.991	4.5373	1	10711000			16014	994	9860	9912	15372	15372					-0.01800398570139805
KEHEEFQITA	10	Unmodified	_KEHEEFQITA_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	616.3019409179688	2	616.30131	1230.58807	0.32871	0.00020259	-0.12951	-7.9819E-05	0.1992	0.00012277	616.3013697299446	34.013	0.25891	33.838	33.709	33.967	-0.17512					12	4	3	0	0	0	0.032937	2	12647	12609;12647		125.04	67.316	1	78049000			16015	994	9860	9912	15373;15374	15374					-0.01800398570139805
KEHEEFQITA	10	Unmodified	_KEHEEFQITA_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	411.2032165527344	3	411.203299	1230.58807	-0.19618	-8.0669E-05	0.1873	7.7018E-05	-0.0088797	-3.6513E-06	411.2033460377207	34.018	0.25891	33.843	33.709	33.967	-0.17511					10	4	3	0	0	0	0.26668	1	12671	12671		53.47	33.844	1	24126000			16016	994	9860	9912	15375	15375					-0.01800398570139805
KEHEEFQITA	10	Unmodified	_KEHEEFQITA_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	616.3013916015625	2	616.30131	1230.58807	0.42815	0.00026387	-0.049381	-3.0433E-05	0.37877	0.00023344	616.3013018605187	34.244	0.26019	33.949	33.767	34.027	-0.29419					11	4	3	0	0	0	0.051251	1	12601	12601		107.56	47.489	1	22529000			16017	994	9860	9912	15376	15376					-0.01800398570139805
KEHEEFQITA	10	Unmodified	_KEHEEFQITA_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	411.2030029296875	3	411.203299	1230.58807	0.077508	3.1871E-05	-0.23134	-9.5126E-05	-0.15383	-6.3255E-05	411.20323163487535	34.228	0.26019	33.934	33.767	34.027	-0.29419					9	4	3	0	0	0	0.61598	1	12621	12621		27.088	11.84	1	5063500			16018	994	9860	9912	15377	15377					-0.01800398570139805
KEHEEFQITA	10	Unmodified	_KEHEEFQITA_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	616.8031005859375	2	616.30131	1230.58807	0.58	0.00035745	-0.094429	-5.8197E-05	0.48557	0.00029926	616.3012142940592	34.367	0.25945	33.981	33.828	34.087	-0.38558					8	4	3	0	0	0	0.47073	1	12565	12565		49.527	34.279	1	3886600			16019	994	9860	9912	15378	15378					-0.01800398570139805
KEHEEFQITA	10	Unmodified	_KEHEEFQITA_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		3	411.203299	1230.58807	-0.051853	-2.1322E-05	0.55043	0.00022634	0.49858	0.00020502	411.20337493090096	33.841	0.20883	33.841	33.711	33.919	0	-0.031408	0.00042341	NaN	53.47	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4009300			16020	994	9860	9912							-0.01800398570139805
KEHHKAFLA	9	Unmodified	_KEHHKAFLA_					0	0	0		ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	MULTI-SECPEP	HCT116MG_D190212_S2	2	540.7658081054688	2	540.801083	1079.58761	0.37783	0.00020433	0.47157	0.00025503	0.8494	0.00045935	540.8012536378858	21.942	0.15659	21.557	21.427	21.583	-0.38503					4	2	2	0	0	0	0.099389	1	7740	7740		69.338	43.07	1	5490900			16021	4924	9861	9913	15379	15379					0.05100271291325953
KEHINSVSA	9	Unmodified	_KEHINSVSA_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	492.7591247558594	2	492.759081	983.503609	0.36333	0.00017904	-0.029778	-1.4673E-05	0.33356	0.00016436	492.7590216082273	18.219	0.31287	18.219	18.089	18.402	0					15	5	4	0	0	0	0.0080847	2	6254	6221;6254		118.07	27.966	1	89674000			16022	741	9862	9914	15380;15381	15381					0.011196954037586693
KEHINSVSA	9	Unmodified	_KEHINSVSA_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	492.7592468261719	2	492.759081	983.503609	0.064078	3.1575E-05	0.18839	9.2831E-05	0.25247	0.00012441	492.75918700002967	18.918	0.41723	18.549	18.418	18.836	-0.3695					21	7	4	0	0	0	0.0080847	1	6532	6532		118.07	21.957	1	304930000			16023	741	9862	9914	15382	15382					0.011196954037586693
KEHINSVSA	9	Unmodified	_KEHINSVSA_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	984.5115356445312	1	984.510885	983.503609	0.54005	0.00053168	0.35501	0.00034951	0.89505	0.00088119	984.5110643761697	18.918	0.26114	18.549	18.418	18.68	-0.3695					9	4	3	0	0	0	0.0082095	1	6552	6552		117.76	51.304	1	25029000			16024	741	9862	9914	15383	15383					0.011196954037586693
KEHINSVSA	9	Unmodified	_KEHINSVSA_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	984.510885	983.503609	0.56364	0.00055491	-0.15184	-0.00014949	0.4118	0.00040542	984.5102588991433	18.219	0.15664	18.219	18.141	18.298	0	-0.16475	-0.00038759	NaN	117.76	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3223800			16025	741	9862	9914							0.011196954037586693
KEHKNLAEA	9	Unmodified	_KEHKNLAEA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	520.2805786132812	2	520.28018	1038.54581	0.41243	0.00021458	0.057915	3.0132E-05	0.47035	0.00024471	520.2802021476061	15.666	0.26019	15.666	15.536	15.796	0					9	4	3	0	0	0	0.0068462	1	5221	5221		121.5	71.57	1	69695000			16026	3431	9863	9915	15384	15384					0.028076708121261618
KEHKNLAEA	9	Unmodified	_KEHKNLAEA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	520.2806396484375	2	520.28018	1038.54581	0.18546	9.6492E-05	0.89697	0.00046667	1.0824	0.00056317	520.2807454096818	11.732	0.31117	11.443	11.291	11.602	-0.28852					24	12	3	0	0	0	0.62849	1	3782	3782		9.544	0.79857	1	905780			16027	3431	9863	9915	15385	15385					0.028076708121261618
KEIAENQEA	9	Unmodified	_KEIAENQEA_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2531127929688	2	516.253828	1030.4931	0.23773	0.00012273	-0.019315	-9.9713E-06	0.21842	0.00011276	516.2538348094862	17.614	0.26093	17.258	17.127	17.388	-0.35647					10	4	3	0	0	0	0.032914	1	6022	6022		83.429	7.6679	1	10682000			16028	3817	9864	9916	15386	15386					-0.020923320413203328
KEIDAYIVQA	10	Unmodified	_KEIDAYIVQA_					0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	MULTI-MSMS	HCT116MG_D190212_S2	2	575.3099975585938	2	575.311146	1148.60774	0.52799	0.00030376	-0.081869	-4.71E-05	0.44612	0.00025666	575.3107863728794	40.408	0.25885	40.339	40.209	40.468	-0.069626					9	4	3	0	0	0	0.053614	1	15253	15253		84.522	34.968	1	45101000			16029	5011	9865	9917	15387	15387					0.03937977440614304
KEIDAYIVQA	10	Unmodified	_KEIDAYIVQA_					0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	MULTI-MSMS	HCT116MG_D190212_S3	3	575.3109130859375	2	575.311146	1148.60774	0.54226	0.00031197	-0.42564	-0.00024487	0.11662	6.7094E-05	575.3104458562789	40.647	0.26036	40.345	40.163	40.423	-0.30161					9	4	3	0	0	0	0.20425	1	15107	15107		59.052	9.4982	1	10253000			16030	5011	9865	9917	15388	15388					0.03937977440614304
KEIDAYIVQA	10	Unmodified	_KEIDAYIVQA_					0	0	0		nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	nc|ENSG00000168476|Q9H6H4-2|REEP4	MULTI-MATCH	HCT116MG_D190212_S4	4		2	575.311146	1148.60774	0.4715	0.00027126	-0.38001	-0.00021863	0.091481	5.263E-05	575.3106438631315	40.708	0.28766	40.329	40.13	40.418	-0.37828	-0.0084371	-0.0001134	NaN	84.522	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2577800			16031	5011	9865	9917							0.03937977440614304
KEIDIKLQQVY	11	Unmodified	_KEIDIKLQQVY_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MSMS	HCT116MG_D190212_S2	2	688.8958740234375	2	688.892835	1375.77112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.096	1	33.921	33.421	34.421	-0.17512								0	0	0	0.87053	1	12674	12674		23.79	3.3752	1		+		16032	10635	9866	9918	15389	15389					0.09826155491646205
KEIEGIFHA	9	Unmodified	_KEIEGIFHA_					0	0	0		SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	522.7813720703125	2	522.279649	1042.54475	0.6575	0.0003434	-0.42953	-0.00022434	0.22797	0.00011906	522.2794287051436	37.629	0.31258	37.629	37.447	37.759	0					14	5	3	0	0	0	0.0050238	1	14072	14072		137.42	69.343	1	33327000			16033	4250	9867	9919	15390	15390					0.025174564432290936
KEIEGIFHA	9	Unmodified	_KEIEGIFHA_					0	0	0		SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	522.27978515625	2	522.279649	1042.54475	0.15238	7.9587E-05	-0.4998	-0.00026103	-0.34741	-0.00018145	522.2793723011997	37.672	0.40779	37.569	37.335	37.743	-0.10318					15	7	4	0	0	0	0.011082	1	14127	14127		110.67	72.701	1	189120000			16034	4250	9867	9919	15391	15391					0.025174564432290936
KEIEGIFHA	9	Unmodified	_KEIEGIFHA_					0	0	0		SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2788696289062	2	522.279649	1042.54475	0.42162	0.0002202	-0.12896	-6.7353E-05	0.29266	0.00015285	522.2791643627248	37.902	0.21953	37.601	37.51	37.729	-0.30137					26	11	3	0	0	0	0.71345	1	14002	14002		4.3292	0.73274	1	36358000			16035	4250	9867	9919	15392	15392					0.025174564432290936
KEIEGIFHA	9	Unmodified	_KEIEGIFHA_					0	0	0		SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	522.279296875	2	522.279649	1042.54475	0.12136	6.3382E-05	0.029758	1.5542E-05	0.15111	7.8924E-05	522.2795435644964	38.04	0.14308	37.657	37.568	37.711	-0.38283					12	6	2	0	0	0	0.35128	1	13912	13912		25.399	15.325	1	6259700			16036	4250	9867	9919	15393	15393					0.025174564432290936
KEIGACCYVE	10	Unmodified	_KEIGACCYVE_					0	0	0		ENST00000557531.1_1_14:50067143-50067293:+|nuORF;ENST00000437982.1_1_2:130970445-130970847:-|nuORF;ENST00000489471.5_3_2:46787807-46808219:+|nuORF;RHOQ|p.F175Lfs*6|1|0.05|ENSG00000119729|chr2:46580986-46580986|T/-|frameshift_variant;RHOQ|p.R193Efs*2|1|0.25|ENSG00000119729|chr2:46581035-46581035|A/-|frameshift_variant;ENSG00000119729|ENST00000238738|RHOQ	ENST00000557531.1_1_14:50067143-50067293:+|nuORF	ENST00000557531.1_1_14:50067143-50067293:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	372.2324523925781	3	372.168432	1113.48347	-0.31068	-0.00011563	0.82367	0.00030654	0.51298	0.00019092	372.1687376812262	21.682	0.52011	21.297	21.011	21.531	-0.38503					14	9	2	0	0	0	0.85279	1	7571	7571		4.4062	1.3339	1	6601600			16037	2663	9868	9920	15394	15394					-0.0687355964271319
KEIHPLLGRF	10	Unmodified	_KEIHPLLGRF_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MSMS	HCT116MG_D190212_S3	3	605.033203125	2	605.358765	1208.70298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.929	1	39.628	39.128	40.128	-0.30137								0	0	0	0.94925	1	14808	14808		4.897	1.9018	1		+		16038	12651	9869	9921	15395	15395					0.10697375422319055
KEIIEGKPLY	10	Unmodified	_KEIIEGKPLY_					0	0	0			REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MSMS	HCT116MG_D190212_S1	1	595.3438720703125	2	595.344989	1188.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.721	1	56.721	56.221	57.221	0								0	0	0	0.95648	1	21812	21812		3.2813	0.78282	1		+		16039	12286	9870	9922	15396	15396					0.08863427371420585
KEIKKVATP	9	Unmodified	_KEIKKVATP_					0	0	0		nc|ENSG00000189060|P07305-2|H1-0;ENSG00000189060|ENST00000340857|H1-0	nc|ENSG00000189060|P07305-2|H1-0	nc|ENSG00000189060|P07305-2|H1-0	MULTI-MSMS	HCT116MG_D190212_S2	2	507.321533203125	2	507.321317	1012.62808	0.39748	0.00020165	-0.12653	-6.4189E-05	0.27096	0.00013746	507.3211997055214	17.647	0.67872	17.291	16.762	17.441	-0.35647					24	12	3	0	0	0	0.011034	1	5973	5973		110.79	41.688	1	14148000			16040	6017	9871	9923	15397	15397					0.1222719289107772
KEIKKVATP	9	Unmodified	_KEIKKVATP_					0	0	0		nc|ENSG00000189060|P07305-2|H1-0;ENSG00000189060|ENST00000340857|H1-0	nc|ENSG00000189060|P07305-2|H1-0	nc|ENSG00000189060|P07305-2|H1-0	MSMS	HCT116MG_D190212_S3	3	507.3211364746094	2	507.321317	1012.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.883	1	15.968	15.468	16.468	0.085423								0	0	0	0.38321	1	5230	5230		34.402	15.145	1				16041	6017	9871	9923	15398	15398					0.1222719289107772
KEIKKVSSRRV	11	Unmodified	_KEIKKVSSRRV_					0	0	0			REV__SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant	REV__SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	443.9487609863281	3	443.949016	1328.82522	0.42749	0.00018978	-1.1811	-0.00052433	-0.75358	-0.00033455	443.94843953514373	56.175	0.53149	55.868	55.616	56.148	-0.30626					19	9	3	0	0	0	0.74191	1	21055	21055		0.40827	0.40827	1	3364500	+		16042	13369	9872	9924	15399	15399					0.17395792433876522
KEIKKVSSRRV	11	Unmodified	_KEIKKVSSRRV_					0	0	0			REV__SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant	REV__SRGAP2|p.P339Lfs*2|1|0.24|ENSG00000266028|chr1:206401603-206401603|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	443.949016	1328.82522	0.26605	0.00011811	-0.92359	-0.00041003	-0.65755	-0.00029192	443.9484918503246	56.004	0.51385	55.818	55.639	56.153	-0.18565	-0.025066	6.1999E-05	NaN	0.40827	31	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84097000	+		16043	13369	9872	9924							0.17395792433876522
KEILIPVF	8	Unmodified	_KEILIPVF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	HCT116MG_D190212_S2	2	479.80230712890625	2	479.802229	957.589904	0.30923	0.00014837	0.10957	5.2571E-05	0.4188	0.00020094	479.80217564803627	56.261	0.15541	56.078	56.001	56.156	-0.18261					6	2	3	0	0	0	0.094591	1	21731	21731		96.285	41.511	1	50570000			16044	3145	9873	9925	15400	15400					0.10941306976428677
KEILIPVF	8	Unmodified	_KEILIPVF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	HCT116MG_D190212_S3	3	479.8023986816406	2	479.802229	957.589904	0.3369	0.00016165	-0.14069	-6.7501E-05	0.19621	9.4144E-05	479.80209054045207	56.407	0.1573	56.124	55.993	56.15	-0.28367					6	2	3	0	0	0	0.42581	1	21423	21423		47.749	19.262	1	4650000			16045	3145	9873	9925	15401	15401					0.10941306976428677
KEILIRRQ	8	Unmodified	_KEILIRRQ_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-MSMS	HCT116MG_D190212_S1	1	528.3375244140625	2	528.337833	1054.66111	0.23594	0.00012466	-0.43174	-0.0002281	-0.19579	-0.00010344	528.3375323115132	60.672	1.0814	60.672	60.491	61.572	0					35	20	2	0	0	0	0.86858	2	23396	23396;23664		2.0598	0	1	184290000			16046	5589	9874	9926	15402;15403	15402					0.13596819733811571
KEILIRRQ	8	Unmodified	_KEILIRRQ_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-MSMS	HCT116MG_D190212_S2	2	528.337890625	2	528.337833	1054.66111	0.48759	0.00025761	-0.13183	-6.9648E-05	0.35576	0.00018796	528.3376642296682	60.701	0.56786	60.553	60.373	60.941	-0.14852					17	10	2	0	0	0	0.85329	1	23489	23489		4.756	0	1	25292000			16047	5589	9874	9926	15404	15404					0.13596819733811571
KEILIRRQ	8	Unmodified	_KEILIRRQ_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	528.337833	1054.66111	0.48759	0.00025761	-0.13183	-6.9648E-05	0.35576	0.00018796	528.3376642296682	60.701	0.56786	60.553	60.373	60.941	-0.14852	-0.059764	0.00019185	NaN	4.756	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25292000			16048	5589	9874	9926							0.13596819733811571
KEINNKLY	8	Unmodified	_KEINNKLY_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MSMS	HCT116MG_D190212_S2	2	511.2884216308594	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.104	1	51.92	51.42	52.42	-0.18424								0	0	0	0.8837	1	20007	20007		5.2307	0	1		+		16049	12616	9875	9927	15405	15405					0.05093742960286818
KEIRWVIIGP	10	Unmodified	_KEIRWVIIGP_					0	0	0			REV__ENSG00000135407|ENST00000549994|AVIL	REV__ENSG00000135407|ENST00000549994|AVIL	MULTI-MSMS	HCT116MG_D190212_S4	4	605.8716430664062	2	605.868966	1209.72338	1.1323	0.00068603	2.2591	0.0013687	3.3914	0.0020547	605.8716224444073	53.684	0.67671	53.354	53.093	53.769	-0.32923					21	12	2	0	0	0	0.87945	1	20090	20090		3.5965	0	1	2540100	+		16050	12088	9876	9928	15406	15406					0.12690546082126275
KEISSLREK	9	Unmodified	_KEISSLREK_					0	0	0			REV__ENSG00000196275|ENST00000451013|GTF2IRD2	REV__ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	HCT116MG_D190212_S1	1	545.3143920898438	2	545.316763	1088.61897	0.62343	0.00033997	-0.80457	-0.00043875	-0.18114	-9.878E-05	545.3160218522905	46.436	0.56837	46.436	46.13	46.699	0					24	10	3	0	0	0	0.72399	1	17579	17579		3.5965	0.31518	1	25992000	+		16051	13483	9877	9929	15407	15407					0.07820799534761136
KEISSLREK	9	Unmodified	_KEISSLREK_					0	0	0			REV__ENSG00000196275|ENST00000451013|GTF2IRD2	REV__ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	545.316763	1088.61897	0.62343	0.00033997	-0.80457	-0.00043875	-0.18114	-9.878E-05	545.3160218522905	46.436	0.56837	46.436	46.13	46.699	0	-0.093393	-0.00013145	NaN	3.5965	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25992000	+		16052	13483	9877	9929							0.07820799534761136
KEISSLREK	9	Unmodified	_KEISSLREK_					0	0	0			REV__ENSG00000196275|ENST00000451013|GTF2IRD2	REV__ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	545.316763	1088.61897	0.94458	0.00051509	-0.60245	-0.00032853	0.34213	0.00018657	545.3163369375047	46.734	0.36017	46.623	46.42	46.78	-0.11121	0.093393	8.8989E-05	NaN	3.5965	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7826800	+		16053	13483	9877	9929							0.07820799534761136
KEIVRTGH	8	Unmodified	_KEIVRTGH_					0	0	0			REV__ENST00000601876.1_1_19:44171370-44174272:-|nuORF	REV__ENST00000601876.1_1_19:44171370-44174272:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	470.27227783203125	2	470.272158	938.529764	0.20074	9.4404E-05	0.17476	8.2184E-05	0.3755	0.00017659	470.27214372860857	49.415	0.77367	49.415	49.131	49.905	0					33	14	4	0	0	0	0.80542	1	18801	18801		10.824	0.75	1	1202100000	+		16054	16749	9878	9930	15408	15408					0.058040093658974
KEKASWSSL	9	Unmodified	_KEKASWSSL_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000567266.5_1_16:85833348-85838718:+|nuORF;ENST00000569997.1_1_16:85838427-85838718:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2772216796875	2	518.277106	1034.53966	0.39372	0.00020406	0.105	5.442E-05	0.49872	0.00025848	518.2770319017899	33.806	0.20839	33.613	33.482	33.691	-0.19297					5	3	2	0	0	0	0.0158	1	12565	12565		100.71	40.635	1	27629000			16055	3127	9879	9931	15409	15409					0.023771525806068894
KEKASWSSL	9	Unmodified	_KEKASWSSL_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1;ENST00000567266.5_1_16:85833348-85838718:+|nuORF;ENST00000569997.1_1_16:85838427-85838718:+|nuORF	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	518.277106	1034.53966	0.47068	0.00024394	-0.40784	-0.00021137	0.062842	3.2569E-05	518.2772220315397	33.56	0.20778	33.56	33.4	33.607	0	-0.026556	-0.00041545	NaN	100.71	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2646000			16056	3127	9879	9931							0.023771525806068894
KEKEAGVVA	9	Unmodified	_KEKEAGVVA_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	HCT116MG_D190212_S1	1	465.7662658691406	2	465.766374	929.518196	0.36244	0.00016881	-0.4157	-0.00019362	-0.053262	-2.4808E-05	465.76611884046775	17.75	0.2084	17.75	17.62	17.828	0					9	3	3	0	0	0	0.07468	1	6079	6079		63.227	15.479	1	7186500			16057	2363	9880	9932	15410	15410					0.05061767551910634
KEKEAGVVA	9	Unmodified	_KEKEAGVVA_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	HCT116MG_D190212_S2	2	465.766357421875	2	465.766374	929.518196	-0.15616	-7.2733E-05	0.2796	0.00013023	0.12345	5.7497E-05	465.76646065908517	18.45	0.26132	18.087	17.904	18.165	-0.36325					7	4	2	0	0	0	0.07468	1	6350	6350		63.227	15.479	1	18516000			16058	2363	9880	9932	15411	15411					0.05061767551910634
KEKEEAVVA	9	Unmodified	_KEKEEAVVA_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	HCT116MG_D190212_S2	2	501.77716064453125	2	501.776939	1001.53933	0.42791	0.00021472	0.43557	0.00021856	0.86348	0.00043327	501.77701986700384	19.631	0.25961	19.256	19.091	19.351	-0.37503					9	4	3	0	0	0	0.045679	1	6830	6830		76.825	24.556	1	13482000			16059	2931	9881	9933	15412	15412					0.038617328607642776
KEKEEAVVA	9	Unmodified	_KEKEEAVVA_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MATCH	HCT116MG_D190212_S1	1		2	501.776939	1001.53933	0.28144	0.00014122	0.17176	8.6187E-05	0.45321	0.00022741	501.7768899797465	18.897	0.20853	18.897	18.766	18.975	0	-0.17986	-0.00018213	NaN	76.825	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3766700			16060	2931	9881	9933							0.038617328607642776
KEKEEFAVP	9	Unmodified	_KEKEEFAVP_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN1|p.E54D|1|0.28|ENSG00000135018|chr9:83707518-83707518|C/A|missense_variant;UBQLN2|p.I75Ffs*7|1|0.12|ENSG00000188021|chrX:56564096-56564096|A/-|frameshift_variant;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	HCT116MG_D190212_S1	1	538.78466796875	2	538.784764	1075.55498	0.49414	0.00026624	0.45916	0.00024739	0.9533	0.00051362	538.7846632734453	33.582	0.93752	33.582	33.452	34.389	0					30	17	2	0	0	0	0.053544	2	12446	12446;12566		72.968	27.228	1	20346000			16061	3322	9882	9934	15413;15414	15413					0.020220193778186513
KEKEEFAVP	9	Unmodified	_KEKEEFAVP_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN1|p.E54D|1|0.28|ENSG00000135018|chr9:83707518-83707518|C/A|missense_variant;UBQLN2|p.I75Ffs*7|1|0.12|ENSG00000188021|chrX:56564096-56564096|A/-|frameshift_variant;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.78515625	2	538.784764	1075.55498	0.51626	0.00027815	-0.17799	-9.5897E-05	0.33827	0.00018226	538.7845808988975	33.852	1.1923	33.659	33.482	34.675	-0.19297					52	22	4	0	0	0	0.13316	2	12557	12557;12817		51.63	11.68	1	89860000			16062	3322	9882	9934	15415;15416	15415					0.020220193778186513
KEKEEFAVP	9	Unmodified	_KEKEEFAVP_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;UBQLN1|p.E54D|1|0.28|ENSG00000135018|chr9:83707518-83707518|C/A|missense_variant;UBQLN2|p.I75Ffs*7|1|0.12|ENSG00000188021|chrX:56564096-56564096|A/-|frameshift_variant;UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant;UBQLN2|p.P525Lfs*71|10|0.37|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.78466796875	2	538.784764	1075.55498	0.47769	0.00025737	-0.35886	-0.00019335	0.11882	6.4021E-05	538.7843895973997	34.073	0.77991	33.779	33.559	34.339	-0.29419					32	14	3	0	0	0	0.11363	1	12511	12511		55.503	13.547	1	11459000			16063	3322	9882	9934	15417	15417					0.020220193778186513
KEKEEFEKA	9	Unmodified	_KEKEEFEKA_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2930908203125	2	569.292953	1136.57135	0.40237	0.00022907	0.11832	6.7356E-05	0.52069	0.00029642	569.2930204972565	17.667	0.20877	17.31	17.18	17.388	-0.35647					6	3	2	0	0	0	0.0014605	1	6035	6035		190.03	93.921	1	15400000			16064	2175	9883	9935	15418	15418					0.008531005438953798
KEKEEFREA	9	Unmodified	_KEKEEFREA_					0	0	0		nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	MULTI-MSMS	HCT116MG_D190212_S1	1	389.19989013671875	3	389.199777	1164.5775	0.11577	4.5058E-05	-0.098369	-3.8285E-05	0.017403	6.7732E-06	389.19963068397664	17.542	0.2086	17.542	17.411	17.62	0					6	3	2	0	0	0	0.095731	1	5995	5995		59.052	34.095	1	10248000			16065	1272	9884	9936	15419	15419					0.0017961877545076277
KEKEEFREA	9	Unmodified	_KEKEEFREA_					0	0	0		nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	MULTI-MSMS	HCT116MG_D190212_S1	1	583.2953491210938	2	583.296027	1164.5775	0.78491	0.00045784	-0.40366	-0.00023545	0.38125	0.00022238	583.2956423459161	17.542	0.31301	17.542	17.307	17.62	0					7	5	2	0	0	0	0.2333	1	5996	5996		33.445	7.1768	1	9991700			16066	1272	9884	9936	15420	15420					0.0017961877545076277
KEKEEFREA	9	Unmodified	_KEKEEFREA_					0	0	0		nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	MULTI-MSMS	HCT116MG_D190212_S2	2	389.19976806640625	3	389.199777	1164.5775	-0.16501	-6.422E-05	0.2146	8.3521E-05	0.049591	1.9301E-05	389.1997937795678	18.266	0.31359	17.906	17.751	18.064	-0.35967					11	5	3	0	0	0	0.21959	1	6281	6281		39.213	13.192	1	21371000			16067	1272	9884	9936	15421	15421					0.0017961877545076277
KEKEEFREA	9	Unmodified	_KEKEEFREA_					0	0	0		nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	MULTI-MSMS	HCT116MG_D190212_S2	2	583.2962646484375	2	583.296027	1164.5775	0.26981	0.00015738	0.097265	5.6734E-05	0.36707	0.00021411	583.2959433589626	18.271	0.47029	17.91	17.75	18.22	-0.36035					15	8	4	0	0	0	0.0040425	1	6282	6282		174.48	104.15	1	41441000			16068	1272	9884	9936	15422	15422					0.0017961877545076277
KEKEGFPIT	9	Unmodified	_KEKEGFPIT_					0	0	0		ENST00000492390.5_1_1:1636243-1639660:-|nuORF;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-6|CDK11B;CDK11B|p.K551Qfs*7|1|0.06|ENSG00000248333|chr1:1637148-1637161|TCGTGCAGGTGTTT/-|frameshift_variant;ENST00000468800.5_1_1:1635923-1638967:-|nuORF;CDK11A|p.K539Qfs*7|1|0.56|ENSG00000008128|chr1:1704290-1704303|TCGTGCAGGTGTTT/-|frameshift_variant;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF;ENST00000474916.1_1_1:1636243-1639664:-|nuORF;nc|ENSG00000248333|P21127|CDK11B	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	525.238037109375	2	524.787307	1047.56006	0.32313	0.00016957	0.016319	8.5638E-06	0.33945	0.00017814	524.7872020568367	31.541	0.46955	31.271	31.064	31.534	-0.27028					14	8	3	0	0	0	0.15584	1	11589	11589		41.956	9.1699	1	5412800			16069	389	9885	9937	15423	15423					0.038183232404207956
KEKEKRRRRKW	11	Unmodified	_KEKEKRRRRKW_					0	0	0		PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	800.4854736328125	2	800.486956	1598.95936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.686	1	47.554	47.054	48.054	-0.13281								0	0	0	0.95636	1	18197	18197		2.9952	2.6882	1				16070	9788	9886	9938	15424	15424					0.18383870979278072
KEKESSDTLSA	11	Unmodified	_KEKESSDTLSA_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	HCT116MG_D190212_S1	1	597.7968139648438	2	597.796057	1193.57756	0.53592	0.00032037	0.83091	0.00049671	1.3668	0.00081709	597.7965086637616	22.767	0.20852	22.767	22.637	22.845	0					5	3	2	0	0	0	0.7298	1	8106	8106		10.8	10.8	1	3737100	+		16071	12615	9887	9939	15425	15425					-0.011484260151974013
KEKESSDTLSA	11	Unmodified	_KEKESSDTLSA_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MATCH	HCT116MG_D190212_S2	2		2	597.796057	1193.57756	0.60449	0.00036136	1.0421	0.00062299	1.6466	0.00098435	597.7967568138417	23.408	0.20689	23.023	22.882	23.089	-0.3852	0.12786	0.00015508	NaN	10.8	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7736400	+		16072	12615	9887	9939							-0.011484260151974013
KEKEVVAVA	9	Unmodified	_KEKEVVAVA_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	486.79010009765625	2	486.78985	971.565146	0.25066	0.00012202	-0.085566	-4.1653E-05	0.16509	8.0366E-05	486.7897739128945	22.767	0.26058	22.767	22.585	22.845	0					7	4	2	0	0	0	0.053544	1	8079	8079		72.968	11.61	1	8887200			16073	4314	9888	9940	15426	15426					0.07822627103041668
KEKEVVAVA	9	Unmodified	_KEKEVVAVA_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	486.7901611328125	2	486.78985	971.565146	0.14027	6.828E-05	0.13455	6.5496E-05	0.27481	0.00013378	486.789973163766	23.345	0.36297	22.96	22.778	23.141	-0.3852					10	6	2	0	0	0	0.034046	1	8319	8319		82.529	24.807	1	41281000			16074	4314	9888	9940	15427	15427					0.07822627103041668
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000406094.1_1_6:107090584-107090800:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	544.8087158203125	2	544.808574	1087.60259	0.30544	0.00016641	0.11037	6.0131E-05	0.41581	0.00022654	544.8085109362027	39.945	0.31147	39.945	39.813	40.124	0					14	5	4	0	0	0	0.030039	1	15004	15004		86.332	0.69033	1	31887000			16075	2746	9889	9941	15428	15428					0.062297183686723656
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000406094.1_1_6:107090584-107090800:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	544.80859375	2	544.808574	1087.60259	0.35874	0.00019545	0.33922	0.00018481	0.69796	0.00038026	544.8086197882803	39.993	0.41507	39.92	39.739	40.154	-0.072838					18	7	4	0	0	0	0.030039	1	15067	15067		86.332	0.69033	1	203650000			16076	2746	9889	9941	15429	15429					0.062297183686723656
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000406094.1_1_6:107090584-107090800:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	363.54144287109375	3	363.541475	1087.60259	-0.32365	-0.00011766	0.33269	0.00012095	0.0090383	3.2858E-06	363.54161383485774	39.992	0.31101	39.919	39.739	40.05	-0.072838					11	5	3	0	0	0	0.21258	1	15079	15079		30.703	3.4802	1	37771000			16077	2746	9889	9941	15430	15430					0.062297183686723656
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000406094.1_1_6:107090584-107090800:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	544.8087768554688	2	544.808574	1087.60259	0.30253	0.00016482	0.34318	0.00018697	0.64571	0.00035179	544.8086477267902	40.23	0.36441	39.929	39.747	40.112	-0.30137					13	6	3	0	0	0	0.030039	1	14930	14930		86.332	0.69033	1	33739000			16078	2746	9889	9941	15431	15431					0.062297183686723656
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000406094.1_1_6:107090584-107090800:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	544.7592163085938	2	544.808574	1087.60259	0.53254	0.00029013	0.0036418	1.9841E-06	0.53618	0.00029211	544.808671744249	40.376	0.21664	39.998	39.865	40.082	-0.37828					7	4	2	0	0	0	0.14362	1	14786	14786		49.554	7.5987	1	3280700			16079	2746	9889	9941	15432	15432					0.062297183686723656
KEKGTWVQL	9	Unmodified	_KEKGTWVQL_					0	0	0		ENST00000406094.1_1_6:107090584-107090800:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	ENST00000406094.1_1_6:107090584-107090800:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	363.541475	1087.60259	-0.23037	-8.375E-05	0.01879	6.8308E-06	-0.21158	-7.6919E-05	363.541413841079	40.23	0.20849	39.929	39.799	40.007	-0.30137	0.0049868	-0.00021546	NaN	30.703	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5876400			16080	2746	9889	9941							0.062297183686723656
KEKIKLKKKRK	11	Unmodified	_KEKIKLKKKRK_					0	0	0		ENST00000495198.6_1_5:64023893-64064425:-|nuORF;SREK1IP1|p.K137Efs*12|1|0.42|ENSG00000153006|chr5:64724444-64724445|-/T|frameshift_variant;SREK1IP1|p.G128Rfs*21|1|0.17|ENSG00000153006|chr5:64724470-64724471|-/T|frameshift_variant;ENSG00000153006|ENST00000513458|SREK1IP1	ENST00000495198.6_1_5:64023893-64064425:-|nuORF	ENST00000495198.6_1_5:64023893-64064425:-|nuORF	MSMS	HCT116MG_D190212_S1	1	713.6076049804688	2	714.000845	1425.98714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.101	1	30.101	29.601	30.601	0								0	0	0	0.95772	1	11027	11027		2.2828	1.0894	1				16081	4170	9890	9942	15433	15433					0.29118381186799525
KEKIKLKKKRK	11	Unmodified	_KEKIKLKKKRK_					0	0	0		ENST00000495198.6_1_5:64023893-64064425:-|nuORF;SREK1IP1|p.K137Efs*12|1|0.42|ENSG00000153006|chr5:64724444-64724445|-/T|frameshift_variant;SREK1IP1|p.G128Rfs*21|1|0.17|ENSG00000153006|chr5:64724470-64724471|-/T|frameshift_variant;ENSG00000153006|ENST00000513458|SREK1IP1	ENST00000495198.6_1_5:64023893-64064425:-|nuORF	ENST00000495198.6_1_5:64023893-64064425:-|nuORF	MSMS	HCT116MG_D190212_S3	3	713.9994506835938	2	714.000845	1425.98714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.032	1	49.717	49.217	50.217	-0.31525								0	0	0	0.95686	1	18856	18856		2.7352	2.4282	1				16082	4170	9890	9942	15434	15434					0.29118381186799525
KEKIQALAEE	10	Unmodified	_KEKIQALAEE_					0	0	0			REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	386.8837890625	3	386.883677	1157.6292	-0.15603	-6.0366E-05	-0.19391	-7.5022E-05	-0.34995	-0.00013539	386.8837498675725	25.587	0.20884	25.587	25.457	25.666	0					5	3	2	0	0	0	0.73016	1	9234	9234		17.863	2.1245	1	6888000	+		16083	17659	9891	9943	15435	15435					0.05669362469302541
KEKIQALAEE	10	Unmodified	_KEKIQALAEE_					0	0	0			REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	386.883544921875	3	386.883677	1157.6292	0.17124	6.625E-05	-1.1695	-0.00045245	-0.99823	-0.0003862	386.88316930123193	25.963	0.36348	25.594	25.343	25.706	-0.36914					10	6	2	0	0	0	0.5682	1	9388	9388		30.431	8.632	1	42008000	+		16084	17659	9891	9943	15436	15436					0.05669362469302541
KEKIQALAEE	10	Unmodified	_KEKIQALAEE_					0	0	0			REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	386.8834533691406	3	386.883677	1157.6292	0.048718	1.8848E-05	-0.25829	-9.9926E-05	-0.20957	-8.1078E-05	386.8835139600103	25.718	0.26042	25.591	25.442	25.702	-0.12795					13	4	4	0	0	0	0.70476	1	9213	9213		19.987	0.36094	1	17267000	+		16085	17659	9891	9943	15437	15437					0.05669362469302541
KEKIQALAEE	10	Unmodified	_KEKIQALAEE_					0	0	0			REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	386.8835144042969	3	386.883677	1157.6292	0.079273	3.0669E-05	-0.27994	-0.00010831	-0.20067	-7.7636E-05	386.8835238735668	25.936	0.20816	25.646	25.516	25.724	-0.29022					8	3	3	0	0	0	0.67142	1	9239	9239		22.775	7.8178	1	7302100	+		16086	17659	9891	9943	15438	15438					0.05669362469302541
KEKIQALAEE	10	Unmodified	_KEKIQALAEE_					0	0	0			REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	386.883677	1157.6292	-0.15603	-6.0366E-05	-0.19391	-7.5022E-05	-0.34995	-0.00013539	386.8837498675725	25.587	0.20884	25.587	25.457	25.666	0	-0.017103	9.1258E-05	NaN	30.431	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6888000	+		16087	17659	9891	9943							0.05669362469302541
KEKIQALAEE	10	Unmodified	_KEKIQALAEE_					0	0	0			REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	386.883677	1157.6292	0.17124	6.625E-05	-1.1695	-0.00045245	-0.99823	-0.0003862	386.88316930123193	25.963	0.36348	25.594	25.343	25.706	-0.36914	-0.010389	-0.001041	NaN	30.431	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42008000	+		16088	17659	9891	9943							0.05669362469302541
KEKIQALAEE	10	Unmodified	_KEKIQALAEE_					0	0	0			REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	REV__tr|U7SEQ5|U7SEQ5_FUSNUAAA-ATPase-likedomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02320PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	386.883677	1157.6292	0.079273	3.0669E-05	-0.27994	-0.00010831	-0.20067	-7.7636E-05	386.8835238735668	25.936	0.20816	25.646	25.516	25.724	-0.29022	0.041398	-8.5919E-06	NaN	30.431	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7302100	+		16089	17659	9891	9943							0.05669362469302541
KEKKEILIN	9	Unmodified	_KEKKEILIN_					0	0	0		tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	tr|U7SSH0|U7SSH0_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01631PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	557.8449096679688	2	557.845156	1113.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.751	1	20.751	20.251	21.251	0								0	0	0	0.76718	1	7269	7269		10.824	0	1				16090	18418	9892	9944	15439	15439					0.12346847091293967
KEKKKKKKKIF	11	Unmodified	_KEKKKKKKKIF_					0	0	0			REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	MSMS	HCT116MG_D190212_S2	2	478.3282470703125	3	478.329056	1431.96534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.11	1	59.956	59.456	60.456	-0.15441								0	0	0	0.96208	1	23257	23257		0	0	1		+		16091	15114	9893	9945	15440	15440					0.2666357643824995
KEKKKKKKKIF	11	Unmodified	_KEKKKKKKKIF_					0	0	0			REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	REV__ENST00000367142.4_1_1:205687259-205687394:-|nuORF	MSMS	HCT116MG_D190212_S4	4	478.32928466796875	3	478.329056	1431.96534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.213	1	60.953	60.453	61.453	-0.2602								0	0	0	0.96208	1	23086	23086		0	0	1		+		16092	15114	9893	9945	15441	15441					0.2666357643824995
KEKKKKKKKKK	11	Unmodified	_KEKKKKKKKKK_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant	REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF;ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MSMS	HCT116MG_D190212_S2	2	715.0066528320312	2	715.00867	1428.00279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.672	1	36.557	36.057	37.057	-0.11478								0	0	0	0.96149	1	13721	13721		0.30703	0	1				16093	2974;15020	9894	9946	15442	15442					0.30590667703836516
KEKLDFHEA	9	Unmodified	_KEKLDFHEA_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.E197Hfs*11|1|0.33|ENSG00000075292|chr2:71349540-71349543|AAAG/-|frameshift_variant;ZNF638|p.K292Dfs*14|1|0.07|ENSG00000075292|chr2:71349827-71349828|CA/-|frameshift_variant;ZNF638|p.K640Tfs*45|1|0.04|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.A1154Qfs*28|1|0.42|ENSG00000075292|chr2:71422969-71422969|A/-|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MULTI-MSMS	HCT116MG_D190212_S2	2	558.7879028320312	2	558.787838	1115.56112	0.47943	0.0002679	0.29119	0.00016272	0.77062	0.00043061	558.7877651776676	25.165	0.20855	24.79	24.66	24.868	-0.37521					7	3	3	0	0	0	0.085458	1	9075	9075		61.09	29.822	1	17901000			16094	1313	9895	9947	15443	15443					0.007965376093352461
KEKLDFHEA	9	Unmodified	_KEKLDFHEA_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.E1606Lfs*12|1|0.06|ENSG00000075292|chr2:71426683-71426684|-/CCTGAGAA|frameshift_variant;ZNF638|p.G1305Rfs*2|2|0.26|ENSG00000075292|chr2:71423418-71423419|-/A|frameshift_variant;ZNF638|p.G1305Vfs*22|2|0.39|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ZNF638|p.E197Hfs*11|1|0.33|ENSG00000075292|chr2:71349540-71349543|AAAG/-|frameshift_variant;ZNF638|p.K292Dfs*14|1|0.07|ENSG00000075292|chr2:71349827-71349828|CA/-|frameshift_variant;ZNF638|p.K640Tfs*45|1|0.04|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;ZNF638|p.A1154Qfs*28|1|0.42|ENSG00000075292|chr2:71422969-71422969|A/-|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MSMS	HCT116MG_D190212_S2	2	372.86090087890625	3	372.860984	1115.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.232	1	24.857	24.357	25.357	-0.37521								0	0	0	0.64498	1	9077	9077		20.415	8.8967	1				16095	1313	9895	9947	15444	15444					0.007965376093352461
KEKLRRRLRDK	11	Unmodified	_KEKLRRRLRDK_					0	0	0			REV__ENSG00000134030|ENST00000256413|CTIF	REV__ENSG00000134030|ENST00000256413|CTIF	MULTI-MSMS	HCT116MG_D190212_S1	1	500.320068359375	3	499.986464	1496.93756	0.28199	0.00014099	0.71355	0.00035676	0.99553	0.00049775	499.98698208394075	61.149	1.5554	61.149	60.952	62.508	0					39	29	2	0	0	0	0.74191	2	23975	23975;24096		0.094841	0.094841	1	7568400	+		16096	12046	9896	9948	15445;15446	15445					0.2089706623071379
KEKLRRRLRDK	11	Unmodified	_KEKLRRRLRDK_					0	0	0			REV__ENSG00000134030|ENST00000256413|CTIF	REV__ENSG00000134030|ENST00000256413|CTIF	MULTI-SECPEP	HCT116MG_D190212_S1	1	500.3798522949219	3	499.986464	1496.93756	0.28199	0.00014099	0.71355	0.00035676	0.99553	0.00049775	499.98698208394075	61.149	1.5554	61.149	60.952	62.508	0					39	29	2	0	0	0	0.36631	1	23873	23873		0.094841	0	1	7568400	+		16097	12046	9896	9948	15447	15447					0.2089706623071379
KEKPNQPAP	9	Unmodified	_KEKPNQPAP_					0	0	0		ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	MULTI-MSMS	HCT116MG_D190212_S1	1	504.7774963378906	2	504.777274	1007.53999	0.41576	0.00020986	-0.24267	-0.00012249	0.17309	8.7369E-05	504.77713442752724	15.353	0.26072	15.353	15.223	15.484	0					6	4	2	0	0	0	0.11363	1	5117	5117		55.503	7.7541	1	2533000			16098	4946	9897	9949	15448	15448					0.03652572300461543
KEKPNQPAP	9	Unmodified	_KEKPNQPAP_					0	0	0		ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7774963378906	2	504.777274	1007.53999	0.33453	0.00016886	-0.08675	-4.379E-05	0.24778	0.00012507	504.7772119973137	15.476	0.67771	15.15	14.967	15.645	-0.32684					20	12	3	0	0	0	0.0201	2	5127	5127;5169		96.367	32.406	1	12538000			16099	4946	9897	9949	15449;15450	15449					0.03652572300461543
KEKRGLKIKVK	11	Unmodified	_KEKRGLKIKVK_					0	0	0			REV__nc|ENSG00000127616|P51532-5|SMARCA4	REV__nc|ENSG00000127616|P51532-5|SMARCA4	MSMS	HCT116MG_D190212_S2	2	663.68212890625	2	663.950821	1325.88709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.66	1	37.556	37.056	38.056	-0.10318								0	0	0	0.9598	1	14124	14124		1.1933	0.84271	1		+		16100	11861	9898	9950	15451	15451					0.23718143853011497
KEKRHKRKEKM	11	Unmodified	_KEKRHKRKEKM_					0	0	0			REV__nc|ENSG00000158195|Q9Y6W5-2|WASF2	REV__nc|ENSG00000158195|Q9Y6W5-2|WASF2	MSMS	HCT116MG_D190212_S1	1	748.9619750976562	2	749.443369	1496.87218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.016	1	60.016	59.516	60.516	0								0	0	0	0.96157	1	23128	23128		0.26902	0.26902	1		+		16101	12776	9899	9951	15452	15452					0.14362328713377792
KEKRKKKSPPL	11	Unmodified	_KEKRKKKSPPL_					0	0	0			REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	MSMS	HCT116MG_D190212_S4	4	669.9353637695312	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.855	1	52.515	52.015	53.015	-0.34023								0	0	0	0.95113	1	19716	19716		5.7319	0.43497	1		+		16102	13039	9900	9952	15453	15453					0.19529266956328684
KEKSHLFQH	9	Unmodified	_KEKSHLFQH_					0	0	0			REV__nc|ENSG00000185880|Q86WT6-4|TRIM69	REV__nc|ENSG00000185880|Q86WT6-4|TRIM69	MSMS	HCT116MG_D190212_S4	4	385.2068786621094	3	385.208607	1152.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.733	1	22.495	21.995	22.995	-0.23758								0	0	0	0.76754	1	7924	7924		9.544	1.5986	1		+		16103	13861	9901	9953	15454	15454					0.03379352457409368
KEKSIFLVA	9	Unmodified	_KEKSIFLVA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MSMS	HCT116MG_D190212_S1	1	517.8157958984375	2	517.815867	1033.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.522	1	43.522	43.022	44.022	0								0	0	0	0.2496	1	16444	16444		43.772	7.3062	1				16104	2606	9902	9954	15455	15455					0.10171790516801593
KEKSIFLVA	9	Unmodified	_KEKSIFLVA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MSMS	HCT116MG_D190212_S3	3	517.816162109375	2	517.815867	1033.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.743	1	43.437	42.937	43.937	-0.30616								0	0	0	0.088354	1	16331	16331		59.368	15.596	1				16105	2606	9902	9954	15456	15456					0.10171790516801593
KEKTIFVAL	9	Unmodified	_KEKTIFVAL_					0	0	0			REV__ENST00000264313.10_1_4:48344142-48371916:+|nuORF	REV__ENST00000264313.10_1_4:48344142-48371916:+|nuORF	MSMS	HCT116MG_D190212_S1	1	350.2170715332031	3	350.21822	1047.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.377	1	28.377	27.877	28.877	0								0	0	0	0.7694	1	10334	10334		2.9952	0	1		+		16106	14664	9903	9955	15457	15457					0.11092077033845271
KEKVREEIKSE	11	Unmodified	_KEKVREEIKSE_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	458.9244384765625	3	458.924424	1373.75144	0.10936	5.0188E-05	0.35165	0.00016138	0.46101	0.00021157	458.92464154625236	21.932	0.20875	21.932	21.802	22.011	0					6	3	2	0	0	0	0.61628	1	7744	7744		33.632	2.1703	1	12223000			16107	5996	9904	9956	15458	15458					0.07951779480913501
KEKVSIYEA	9	Unmodified	_KEKVSIYEA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7929077148438	2	533.792589	1065.57063	0.35202	0.00018791	-0.19879	-0.00010611	0.15323	8.1793E-05	533.7927577030764	26.719	0.20849	26.719	26.605	26.813	0					6	3	2	0	0	0	0.094138	1	9679	9679		59.368	24.436	1	6187900			16108	5492	9905	9957	15459	15459					0.04046305894848956
KEKVSIYEA	9	Unmodified	_KEKVSIYEA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	533.792589	1065.57063	0.62701	0.00033469	0.30861	0.00016473	0.93562	0.00049943	533.7926975105058	27.197	0.26188	26.845	26.713	26.975	-0.35254	0.063009	5.2488E-05	NaN	59.368	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14381000			16109	5492	9905	9957							0.04046305894848956
KEKYEKDIAA	10	Unmodified	_KEKYEKDIAA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000502313.1_1_5:77940194-77940227:-|nuORF;ENST00000522557.1_1_20:56063450-56063633:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MSMS	HCT116MG_D190212_S1	1	398.8833923339844	3	398.883677	1193.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.672	1	18.672	18.172	19.172	0								0	0	0	0.91066	1	6432	6432		13.519	0.66272	1				16110	4668;6037	9906	9958	15460	15460					0.040133624693453385
KEKYEKDIAA	10	Unmodified	_KEKYEKDIAA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000502313.1_1_5:77940194-77940227:-|nuORF;ENST00000522557.1_1_20:56063450-56063633:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S2	2	597.8221435546875	2	597.821878	1193.6292	0.66449	0.00039725	0.050435	3.0151E-05	0.71493	0.0004274	597.8218304308772	19.335	0.20864	18.966	18.836	19.044	-0.3695					7	3	3	0	0	0	0.035787	1	6710	6710		109.15	50.094	1	20574000			16111	4668;6037	9906	9958	15461	15461					0.040133624693453385
KEKYEKDIAA	10	Unmodified	_KEKYEKDIAA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000502313.1_1_5:77940194-77940227:-|nuORF;ENST00000522557.1_1_20:56063450-56063633:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	597.821878	1193.6292	0.47684	0.00028507	0.03203	1.9148E-05	0.50887	0.00030421	597.8219188890017	18.624	0.15623	18.624	18.506	18.662	0	-0.17114	-1.49E-05	NaN	109.15	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3275100			16112	4668;6037	9906	9958							0.040133624693453385
KELDEISAW	9	Unmodified	_KELDEISAW_					0	0	0			REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	545.774169921875	2	545.774396	1089.53424	0.40638	0.00022179	-0.93956	-0.00051279	-0.53318	-0.000291	545.7737876010484	19.04	0.46808	19.109	18.979	19.447	0.069159					13	8	3	0	0	0	0.14171	1	6511	6511		49.933	8.0934	1	16837000	+		16113	10173	9907	9959	15462	15462					-0.006945710018499085
KELDENKVY	9	Unmodified	_KELDENKVY_					0	0	0			REV__ENST00000468819.1_1_3:195606029-195638730:-|nuORF	REV__ENST00000468819.1_1_3:195606029-195638730:-|nuORF	MSMS	HCT116MG_D190212_S3	3	569.733642578125	2	569.292953	1136.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.047	1	51.738	51.238	52.238	-0.30927								0	0	0	0.67173	1	19666	19666		20.454	3.3407	1		+		16114	10674	9908	9960	15463	15463					0.008531005438953798
KELEFSNL	8	Unmodified	_KELEFSNL_					0	0	0		nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	MULTI-MSMS	HCT116MG_D190212_S2	2	490.2587585449219	2	490.258382	978.502212	0.19719	9.6674E-05	0.086971	4.2638E-05	0.28416	0.00013931	490.25840496714983	20.011	0.25849	19.636	19.455	19.713	-0.37503					7	4	2	0	0	0	0.29007	1	6979	6979		60.074	6.2411	1	14351000			16115	3988	9909	9961	15464	15464					0.012100613150096251
KELEFSNL	8	Unmodified	_KELEFSNL_					0	0	0		nc|ENSG00000147481|Q9NSN8-2|SNTG1;ENSG00000147481|ENST00000642720|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	nc|ENSG00000147481|Q9NSN8-2|SNTG1	MULTI-MSMS	HCT116MG_D190212_S3	3	490.2581787109375	2	490.258382	978.502212	0.082776	4.0582E-05	0.27575	0.00013519	0.35853	0.00017577	490.25838102099397	19.04	0.31178	19.109	18.979	19.291	0.069159					10	5	3	0	0	0	0.22303	1	6515	6515		69.105	3.8699	1	16574000			16116	3988	9909	9961	15465	15465					0.012100613150096251
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S1	1	534.782470703125	2	534.782222	1067.54989	0.25139	0.00013444	0.1429	7.6418E-05	0.39429	0.00021086	534.7823092433653	19.367	0.46891	19.367	19.235	19.704	0					23	8	4	0	0	0	0.0037246	3	6712	6687;6712;6808		154.75	78.992	1	294460000			16117	4464	9910	9962	15466;15467;15468	15467					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S1	1	1068.5574951171875	1	1068.55717	1067.54989	0.57568	0.00061515	-0.01137	-1.2149E-05	0.56431	0.000603	1068.5572274495953	19.365	0.1561	19.365	19.287	19.443	0					4	2	2	0	0	0	0.0034297	1	6740	6740		159.1	73.459	1	4540300			16118	4464	9910	9962	15469	15469					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MSMS	HCT116MG_D190212_S1	1	356.8570861816406	3	356.85724	1067.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.422	1	19.422	18.922	19.922	0								0	0	0	0.16977	1	6734	6734		39.213	22.938	1				16119	4464	9910	9962	15470	15470					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S2	2	534.7824096679688	2	534.782222	1067.54989	0.40211	0.00021504	-0.26828	-0.00014347	0.13383	7.157E-05	534.7822322196721	20.011	0.83891	19.636	19.455	20.293	-0.37503					45	15	5	0	0	0	0.0034966	1	6951	6951		166.77	93.801	1	1718599999.9999998			16120	4464	9910	9962	15471	15471					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S2	2	1068.55712890625	1	1068.55717	1067.54989	0.45746	0.00048882	-0.18676	-0.00019956	0.2707	0.00028926	1068.5569199678148	20.01	0.36263	19.635	19.455	19.817	-0.37503					17	6	4	0	0	0	0.0034297	1	6972	6972		159.1	66.448	1	101040000			16121	4464	9910	9962	15472	15472					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S2	2	356.8570251464844	3	356.85724	1067.54989	-0.21718	-7.7503E-05	-0.069996	-2.4978E-05	-0.28718	-0.00010248	356.85714691061247	20.011	0.4149	19.636	19.455	19.869	-0.37503					16	7	3	0	0	0	0.077982	1	6974	6974		49.527	6.6921	1	65752000			16122	4464	9910	9962	15473	15473					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7520751953125	2	534.782222	1067.54989	0.43439	0.0002323	-0.28226	-0.00015095	0.15213	8.1356E-05	534.7822578336347	19.04	1.3016	19.109	18.927	20.228	0.069159					67	24	6	0	0	0	0.0037246	4	6481	6465;6481;6486;6716		154.75	88.296	1	1559499999.9999998			16123	4464	9910	9962	15474;15475;15476;15477	15475					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S3	3	356.85711669921875	3	356.85724	1067.54989	-0.12943	-4.6187E-05	0.029161	1.0406E-05	-0.10027	-3.5781E-05	356.85719063423227	19.04	0.52015	19.109	18.927	19.447	0.069159					22	9	4	0	0	0	0.047849	1	6505	6505		61.09	26.868	1	99875000			16124	4464	9910	9962	15478	15478					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S3	3	1068.55810546875	1	1068.55717	1067.54989	0.5004	0.00053471	-0.044952	-4.8033E-05	0.45545	0.00048668	1068.55694546882	19.04	0.25976	19.109	18.979	19.239	0.069159					11	4	3	0	0	0	0.0034297	1	6507	6507		159.1	66.448	1	37531000			16125	4464	9910	9962	15479	15479					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S4	4	534.7823486328125	2	534.782222	1067.54989	0.42064	0.00022495	-0.11219	-5.9999E-05	0.30845	0.00016495	534.7821955116176	19.446	0.71812	19.259	19.077	19.795	-0.18674					44	13	5	0	0	0	0.0034966	1	6578	6578		166.77	100.31	1	390760000			16126	4464	9910	9962	15480	15480					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S4	4	356.8571472167969	3	356.85724	1067.54989	-0.054436	-1.9426E-05	0.03767	1.3443E-05	-0.016766	-5.9831E-06	356.8571650175278	19.446	0.31197	19.259	19.129	19.441	-0.18674					12	5	3	0	0	0	0.047849	1	6601	6601		61.09	20.365	1	13493000			16127	4464	9910	9962	15481	15481					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S4	4	1068.5576171875	1	1068.55717	1067.54989	0.55477	0.0005928	0.41376	0.00044213	0.96853	0.0010349	1068.5574201699135	19.446	0.20802	19.259	19.129	19.337	-0.18674					9	3	3	0	0	0	0.0024989	1	6606	6606		184.36	88.245	1	10214000			16128	4464	9910	9962	15482	15482					0.01881715515196447
KELEKTYSA	9	Unmodified	_KELEKTYSA_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MSMS	HCT116MG_D190212_S4	4	534.7821044921875	2	534.782222	1067.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.987	1	19.793	19.293	20.293	-0.19367								0	0	0	0.76616	1	6814	6814		14.405	1.3629	1				16129	4464	9910	9962	15483	15483					0.01881715515196447
KELFLKLIKIF	11	Unmodified	_KELFLKLIKIF_					0	0	0		tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	696.2887573242188	2	696.454874	1390.89519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.617	1	10.344	9.8437	10.844	-0.27365								0	0	0	0.96208	1	3370	3370		0	0	1				16130	18445	9911	9963	15484	15484					0.21538278049774817
KELGKQLPVLS	11	Unmodified	_KELGKQLPVLS_					0	0	0			REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MSMS	HCT116MG_D190212_S1	1	606.3695678710938	2	606.371538	1210.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.135	1	55.135	54.635	55.635	0								0	0	0	0.95273	1	21163	21163		4.897	0.95262	1		+		16131	12224	9912	9964	15485	15485					0.13158805154080255
KELILTVLSVP	11	Unmodified	_KELILTVLSVP_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MSMS	HCT116MG_D190212_S1	1	606.3880004882812	2	606.384114	1210.75368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.595	1	56.595	56.095	57.095	0								0	0	0	0.95196	1	21761	21761		5.2969	0.96765	1				16132	3807	9913	9965	15486	15486					0.15672859956634966
KELILTVLSVP	11	Unmodified	_KELILTVLSVP_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-SECPEP	HCT116MG_D190212_S2	2	606.314453125	2	606.384114	1210.75368	0.75107	0.00045544	4.1821	0.002536	4.9332	0.0029914	606.8881785605986	57.046	0.41651	56.867	56.635	57.051	-0.17904					10	7	2	0	0	0	0.36512	1	21984	21984		5.2969	1.3525	1	7332700			16133	3807	9913	9965	15487	15487					0.15672859956634966
KELIYMLTLIM	11	Unmodified	_KELIYMLTLIM_					0	0	0			REV__NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant	REV__NCAPH|p.D469Ifs*25|1|0.25|ENSG00000121152|chr2:96360183-96360183|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	684.3851928710938	2	684.387485	1366.76042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.371	1	53.371	52.871	53.871	0								0	0	0	0.95772	1	20438	20438		2.2828	0.43854	1		+		16134	17339	9914	9966	15488	15488					0.09170713521370999
KELKKFSLT	9	Unmodified	_KELKKFSLT_					0	0	0		nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	MSMS	HCT116MG_D190212_S1	1	547.3102416992188	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.08	1	50.08	49.58	50.58	0								0	0	0	0.76818	1	19100	19100		7.2892	0	1				16135	1406	9915	9967	15489	15489					0.11167462062553568
KELKKIIRLC	10	Unmodified	_KELKKIIRLC_					0	0	0			REV__tr|U7SV84|U7SV84_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01167PE=4SV=1	REV__tr|U7SV84|U7SV84_FUSNURrf2familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01167PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	622.6190795898438	2	622.399576	1242.7846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.551	1	41.175	40.675	41.675	-0.37637								0	0	0	0.95507	1	15253	15253		3.5965	0	1		+		16136	17840	9916	9968	15490	15490					0.17291734789910151
KELKKKWKQ	9	Unmodified	_KELKKKWKQ_					0	0	0		TTLL7|p.R152W|1|0.37|ENSG00000137941|chr1:83947176-83947176|G/A|missense_variant	TTLL7|p.R152W|1|0.37|ENSG00000137941|chr1:83947176-83947176|G/A|missense_variant	TTLL7|p.R152W|1|0.37|ENSG00000137941|chr1:83947176-83947176|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	608.3850708007812	2	608.38224	1214.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.321	1	53.321	52.821	53.821	0								0	0	0	0.76973	1	20418	20418		1.8442	0.19162	1				16137	18674	9917	9969	15491	15491					0.15114234973452767
KELKLEFKKVN	11	Unmodified	_KELKLEFKKVN_					0	0	0		tr|U7T249|U7T249_FUSNUDUF4878domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00547PE=4SV=1	tr|U7T249|U7T249_FUSNUDUF4878domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00547PE=4SV=1	tr|U7T249|U7T249_FUSNUDUF4878domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00547PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	688.4634399414062	2	688.41902	1374.82349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.958	1	38.958	38.458	39.458	0								0	0	0	0.95743	1	14601	14601		2.7352	1.4057	1				16138	18564	9918	9970	15492	15492					0.15106738625240723
KELKRKAAARE	11	Unmodified	_KELKRKAAARE_					0	0	0			REV__nc|ENSG00000119969|Q9NRZ9-6|HELLS	REV__nc|ENSG00000119969|Q9NRZ9-6|HELLS	MULTI-MSMS	HCT116MG_D190212_S2	2	650.7709350585938	2	650.39641	1298.77827	0.6263	0.00040734	1.1106	0.00072231	1.7369	0.0011297	650.3968704757582	54.519	1.2796	54.33	53.687	54.967	-0.1894					47	24	3	0	0	0	0.74191	1	21152	21152		4.897	2.1618	1	31911000	+		16139	11680	9919	9971	15493	15493					0.140829328827067
KELLDVALP	9	Unmodified	_KELLDVALP_					0	0	0			REV__nc|ENSG00000112062|Q16539-2|MAPK14	REV__nc|ENSG00000112062|Q16539-2|MAPK14	MULTI-SECPEP	HCT116MG_D190212_S3	3	498.64447021484375	2	499.30005	996.585547	0.41452	0.00020697	0.29753	0.00014856	0.71205	0.00035553	499.30039426430767	54.909	0.15669	54.615	54.507	54.663	-0.29352					4	2	2	0	0	0	0.26328	1	20786	20786		7.9102	1.187	1	2322800	+		16140	11443	9920	9972	15494	15494					0.08711797762850892
KELQRRLKVE	10	Unmodified	_KELQRRLKVE_					0	0	0			REV__ENST00000354500.6_1_9:73442757-73477826:-|nuORF	REV__ENST00000354500.6_1_9:73442757-73477826:-|nuORF	MSMS	HCT116MG_D190212_S2	2	649.8983764648438	2	649.898786	1297.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.55	1	54.361	53.861	54.861	-0.1894								0	0	0	0.94857	1	21005	21005		8.7454	3.8484	1		+		16141	10894	9921	9973	15495	15495					0.14603817025476928
KELRKSRNLK	10	Unmodified	_KELRKSRNLK_					0	0	0			REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	636.3989868164062	2	636.398953	1270.78335	0.50679	0.00032252	-0.53588	-0.00034104	-0.029092	-1.8514E-05	636.3985232170459	54.338	0.57325	54.014	53.723	54.296	-0.32348					21	10	3	0	0	0	0.89178	1	20287	20287		1.4819	1.4819	1	4009700	+		16142	11310	9922	9974	15496	15496					0.1587923674535432
KELRKSRNLK	10	Unmodified	_KELRKSRNLK_					0	0	0			REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	636.398953	1270.78335	0.40525	0.0002579	-0.63078	-0.00040143	-0.22554	-0.00014353	636.3985570055097	54.006	1.0285	53.817	53.325	54.354	-0.1894	-0.098726	-3.0865E-05	NaN	1.4819	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68724000	+		16143	11310	9922	9974							0.1587923674535432
KELRKSRNLK	10	Unmodified	_KELRKSRNLK_					0	0	0			REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	636.398953	1270.78335	0.50679	0.00032252	-0.53588	-0.00034104	-0.029092	-1.8514E-05	636.3985232170459	54.338	0.57325	54.014	53.723	54.296	-0.32348	0.098726	8.9925E-05	NaN	1.4819	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4009700	+		16144	11310	9922	9974							0.1587923674535432
KELRLFAHLI	10	Unmodified	_KELRLFAHLI_					0	0	0			REV__nc|ENSG00000106608|Q8TCY9-3|URGCP	REV__nc|ENSG00000106608|Q8TCY9-3|URGCP	MSMS	HCT116MG_D190212_S1	1	620.3854370117188	2	620.38224	1238.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.729	1	42.729	42.229	43.229	0								0	0	0	0.94551	1	16124	16124		5.7319	1.8555	1		+		16145	11305	9923	9975	15497	15497					0.1401023497346614
KELSFPQYST	10	Unmodified	_KELSFPQYST_					0	0	0			REV__ENSG00000027697|ENST00000367739|IFNGR1	REV__ENSG00000027697|ENST00000367739|IFNGR1	MSMS	HCT116MG_D190212_S3	3	600.300537109375	2	600.300778	1198.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.433	1	44.126	43.626	44.626	-0.30759								0	0	0	0.90892	1	16610	16610		13.906	0	1		+		16146	10568	9924	9976	15498	15498					-0.004346129390569331
KEMEHNTVC	9	Unmodified	_KEMEHNTVC_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;SON|p.I1541V|1|0.1|ENSG00000159140|chr21:33553852-33553852|A/G|missense_variant;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7366943359375	2	545.736434	1089.45831	0.17031	9.2947E-05	0.32552	0.00017765	0.49583	0.00027059	545.7365015723877	18.842	0.2607	18.479	18.321	18.581	-0.36325					6	4	2	0	0	0	0.1535	1	6520	6520		47.594	27.141	1	6549800			16147	4399;9513	9925	9977	15499	15499					-0.0828361444530401
KEMEHNTVCA	10	Unmodified	_KEMEHNTVCA_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MSMS	HCT116MG_D190212_S2	2	581.255126953125	2	581.254991	1160.49543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.876	1	19.501	19.001	20.001	-0.37503								0	0	0	0.78793	1	6917	6917		40.725	16.704	1				16148	4399;9513	9926	9978	15500	15500					-0.07839942899522612
KEMEKSFEV	9	Unmodified	_KEMEKSFEV_					0	0	0		ENSG00000091527|ENST00000264993|CDV3	ENSG00000091527|ENST00000264993|CDV3	ENSG00000091527|ENST00000264993|CDV3	MULTI-MSMS	HCT116MG_D190212_S1	1	563.7760620117188	2	563.776082	1125.53761	0.48186	0.00027166	-0.07976	-4.4967E-05	0.4021	0.0002267	563.7759349628008	31.57	0.20826	31.57	31.44	31.648	0					6	3	2	0	0	0	0.0034297	1	11625	11625		159.1	83.34	1	13402000			16149	1562	9927	9979	15501	15501					-0.02013644219505295
KEMEKSFEV	9	Unmodified	_KEMEKSFEV_					0	0	0		ENSG00000091527|ENST00000264993|CDV3	ENSG00000091527|ENST00000264993|CDV3	ENSG00000091527|ENST00000264993|CDV3	MSMS	HCT116MG_D190212_S2	2	563.7765502929688	2	563.776082	1125.53761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.769	1	31.52	31.02	32.02	-0.24883								0	0	0	1.2405E-18	1	11731	11731		192.32	106.68	1				16150	1562	9927	9979	15502	15502					-0.02013644219505295
KEMEKSFEV	9	Unmodified	_KEMEKSFEV_					0	0	0		ENSG00000091527|ENST00000264993|CDV3	ENSG00000091527|ENST00000264993|CDV3	ENSG00000091527|ENST00000264993|CDV3	MULTI-MSMS	HCT116MG_D190212_S3	3	563.7761840820312	2	563.776082	1125.53761	0.32185	0.00018145	-0.2534	-0.00014286	0.068448	3.859E-05	563.7759982447151	31.882	0.20812	31.612	31.482	31.69	-0.27028					6	3	2	0	0	0	0.030601	1	11688	11688		85.764	31.932	1	10279000			16151	1562	9927	9979	15503	15503					-0.02013644219505295
KEMFDLIHKMR	11	Unmodified	_KEMFDLIHKMR_					0	0	0		tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	724.3806762695312	2	724.381057	1446.74756	0.73523	0.00053259	-0.96895	-0.00070189	-0.23372	-0.0001693	724.3799856702744	37.178	0.53957	36.794	36.488	37.028	-0.38395					21	10	4	0	0	0	0.74191	1	13620	13620		7.609	7.609	1	6627400			16152	18507	9928	9980	15504	15504					0.042056951818040034
KEMLETQVA	9	Unmodified	_KEMLETQVA_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7709350585938	2	524.7708	1047.52705	0.30465	0.00015987	0.50572	0.00026539	0.81037	0.00042526	524.7708967249703	31.377	0.36573	31.107	30.856	31.221	-0.27027					11	6	3	0	0	0	0.095731	1	11459	11459		63.961	11.692	1	18188000			16153	2586	9929	9981	15505	15505					0.005183731260785862
KEMPVKVEA	9	Oxidation (M)	_KEM(Oxidation (M))PVKVEA_		KEM(1)PVKVEA		KEM(44)PVKVEA	0	0	1		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	HCT116MG_D190212_S1	1	523.7811279296875	2	523.781167	1045.54778	0.5365	0.00028101	-0.28064	-0.00014699	0.25586	0.00013401	523.7810286286169	20.647	0.31258	20.647	20.488	20.8	0					9	5	2	0	0	0	0.17033	1	7243	7243		44.392	14.551	1	4346800			16154	3248	9930	9982	15506	15506		77			0.026829635057538326
KEMPVKVEA	9	Oxidation (M)	_KEM(Oxidation (M))PVKVEA_		KEM(1)PVKVEA		KEM(98)PVKVEA	0	0	1		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	HCT116MG_D190212_S2	2	523.78125	2	523.781167	1045.54778	0.32811	0.00017186	0.29042	0.00015212	0.61853	0.00032397	523.7812548787198	21.301	0.25838	20.919	20.755	21.013	-0.38288					8	4	2	0	0	0	0.018739	1	7491	7491		97.741	59.565	1	17231000			16155	3248	9930	9982	15507	15507		77			0.026829635057538326
KEMPVKVEA	9	Oxidation (M)	_KEM(Oxidation (M))PVKVEA_		KEM(1)PVKVEA		KEM(51)PVKVEA	0	0	1		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	HCT116MG_D190212_S3	3	523.7816162109375	2	523.781167	1045.54778	0.23585	0.00012353	0.44283	0.00023195	0.67868	0.00035548	523.781452242681	20.363	0.31238	20.411	20.259	20.572	0.048107					10	5	2	0	0	0	0.13387	1	7059	7059		51.488	21.647	1	2911500			16156	3248	9930	9982	15508	15508		77			0.026829635057538326
KEMPVKVEA	9	Unmodified	_KEMPVKVEA_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	HCT116MG_D190212_S1	1	515.783935546875	2	515.78371	1029.55287	0.30098	0.00015524	0.087314	4.5035E-05	0.3883	0.00020028	515.7836968947828	25.479	0.31266	25.479	25.301	25.614	0					13	5	3	0	0	0	0.0037246	1	9155	9155		154.75	101.35	1	48293000			16157	3248	9930	9983	15509	15509					0.039272673683626635
KEMPVKVEA	9	Unmodified	_KEMPVKVEA_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7837524414062	2	515.78371	1029.55287	0.3247	0.00016747	-0.066726	-3.4416E-05	0.25797	0.00013306	515.7835884614514	25.893	0.57125	25.524	25.239	25.81	-0.36914					22	10	4	0	0	0	0.0035269	1	9329	9329		169.92	114.42	1	300700000			16158	3248	9930	9983	15510	15510					0.039272673683626635
KEMPVKVEA	9	Unmodified	_KEMPVKVEA_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	HCT116MG_D190212_S3	3	516.2352905273438	2	515.78371	1029.55287	0.33269	0.00017159	-0.094353	-4.8666E-05	0.23833	0.00012293	515.7836374966417	25.534	0.36389	25.428	25.204	25.568	-0.10618					16	5	4	0	0	0	0.0034966	2	9100	9100;9105		166.77	111.27	1	50987000			16159	3248	9930	9983	15511;15512	15511					0.039272673683626635
KEMPVKVEA	9	Unmodified	_KEMPVKVEA_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7840576171875	2	515.78371	1029.55287	0.32094	0.00016554	0.20791	0.00010724	0.52885	0.00027277	515.783754931337	25.78	0.3643	25.49	25.255	25.62	-0.29022					10	5	3	0	0	0	0.0056292	1	9154	9154		132.13	80.505	1	12625000			16160	3248	9930	9983	15513	15513					0.039272673683626635
KENAFSLGA	9	Unmodified	_KENAFSLGA_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	HCT116MG_D190212_S2	2	468.7427673339844	2	468.742899	935.471246	-0.012827	-6.0125E-06	0.27154	0.00012728	0.25871	0.00012127	468.74300138621055	37.924	0.25766	37.831	37.702	37.96	-0.09301					7	4	2	0	0	0	0.11363	1	14271	14271		55.503	5.9485	1	12832000			16161	2195	9931	9984	15514	15514					0.0009290800077224048
KENDRILVA	9	Unmodified	_KENDRILVA_					0	0	0		ENSG00000105793|ENST00000222511|GTPBP10	ENSG00000105793|ENST00000222511|GTPBP10	ENSG00000105793|ENST00000222511|GTPBP10	MSMS	HCT116MG_D190212_S1	1	529.3038940429688	2	529.303655	1056.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.324	1	29.324	28.824	29.824	0								0	0	0	0.32081	1	10713	10713		38.615	2.4877	1				16162	2035	9932	9985	15515	15515					0.0667253036326656
KENDRILVA	9	Unmodified	_KENDRILVA_					0	0	0		ENSG00000105793|ENST00000222511|GTPBP10	ENSG00000105793|ENST00000222511|GTPBP10	ENSG00000105793|ENST00000222511|GTPBP10	MULTI-MSMS	HCT116MG_D190212_S2	2	529.303955078125	2	529.303655	1056.59276	0.36154	0.00019136	-0.42501	-0.00022496	-0.063466	-3.3593E-05	529.303888249113	29.904	0.30984	29.603	29.392	29.702	-0.30095					12	5	3	0	0	0	0.10482	1	10983	10983		57.249	15.155	1	33218000			16163	2035	9932	9985	15516	15516					0.0667253036326656
KENDRILVA	9	Unmodified	_KENDRILVA_					0	0	0		ENSG00000105793|ENST00000222511|GTPBP10	ENSG00000105793|ENST00000222511|GTPBP10	ENSG00000105793|ENST00000222511|GTPBP10	MSMS	HCT116MG_D190212_S3	3	529.3045043945312	2	529.303655	1056.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.882	1	29.646	29.146	30.146	-0.23655								0	0	0	0.32081	1	10870	10870		38.615	9.5332	1				16164	2035	9932	9985	15517	15517					0.0667253036326656
KENDRILVA	9	Unmodified	_KENDRILVA_					0	0	0		ENSG00000105793|ENST00000222511|GTPBP10	ENSG00000105793|ENST00000222511|GTPBP10	ENSG00000105793|ENST00000222511|GTPBP10	MULTI-MATCH	HCT116MG_D190212_S1	1		2	529.303655	1056.59276	0.50305	0.00026627	-0.16794	-8.8891E-05	0.33511	0.00017738	529.303710731352	29.266	0.20911	29.266	29.112	29.321	0	-0.16822	4.0493E-05	NaN	57.249	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4640600			16165	2035	9932	9985							0.0667253036326656
KENEANTSP	9	Unmodified	_KENEANTSP_					0	0	0			REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	989.4549560546875	1	989.45343	988.446153	0.77996	0.00077173	0.056143	5.5551E-05	0.8361	0.00082728	989.4536755216145	23.033	0.41611	22.648	22.414	22.83	-0.3852					11	7	2	0	0	0	0.0057285	1	8219	8219		131.27	20.593	1	10853000	+		16166	13469	9933	9986	15518	15518					-0.04853191592474104
KENEANTSP	9	Unmodified	_KENEANTSP_					0	0	0			REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	989.4531860351562	1	989.45343	988.446153	0.6204	0.00061386	0.40034	0.00039612	1.0207	0.00101	989.4538355409535	22.805	0.45617	22.786	22.595	23.051	-0.018869					13	8	2	0	0	0	0.0057285	1	8028	8028		131.27	20.593	1	4350500	+		16167	13469	9933	9986	15519	15519					-0.04853191592474104
KENEANTSP	9	Unmodified	_KENEANTSP_					0	0	0			REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	989.45343	988.446153	0.77996	0.00077173	0.056143	5.5551E-05	0.8361	0.00082728	989.4536755216145	23.033	0.41611	22.648	22.414	22.83	-0.3852	-0.068985	-0.00019662	NaN	131.27	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10853000	+		16168	13469	9933	9986							-0.04853191592474104
KENEANTSP	9	Unmodified	_KENEANTSP_					0	0	0			REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	REV__NWD2|p.E713Rfs*7|1|0.36|ENSG00000174145|chr4:37444124-37444124|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	989.45343	988.446153	0.6204	0.00061386	0.40034	0.00039612	1.0207	0.00101	989.4538355409535	22.805	0.45617	22.786	22.595	23.051	-0.018869	0.068985	0.00014395	NaN	131.27	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4350500	+		16169	13469	9933	9986							-0.04853191592474104
KENGNIATA	9	Unmodified	_KENGNIATA_					0	0	0		FHDC1|p.T439Pfs*2|1|0.28|ENSG00000137460|chr4:152972467-152972467|A/-|frameshift_variant;FHDC1|p.A494Gfs*8|1|0.28|ENSG00000137460|chr4:152974766-152974767|-/G|frameshift_variant;FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant;ENSG00000137460|ENST00000511601|FHDC1;FHDC1|p.W102Gfs*55|1|0.17|ENSG00000137460|chr4:152943355-152943355|T/-|frameshift_variant	FHDC1|p.T439Pfs*2|1|0.28|ENSG00000137460|chr4:152972467-152972467|A/-|frameshift_variant	FHDC1|p.T439Pfs*2|1|0.28|ENSG00000137460|chr4:152972467-152972467|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2380065917969	2	459.237981	916.461409	0.0065698	3.0171E-06	0.4775	0.00021929	0.48407	0.0002223	459.2380940673266	19.023	0.26095	18.653	18.523	18.784	-0.3695					6	4	2	0	0	0	0.22946	1	6603	6603		38.176	3.7738	1	6682800			16170	3477	9934	9987	15520	15520					-0.00016280004615509824
KENLIRCKFK	10	Unmodified	_KENLIRCKFK_					0	0	0			REV__ENSG00000113407|ENST00000265112|TARS1	REV__ENSG00000113407|ENST00000265112|TARS1	MSMS	HCT116MG_D190212_S1	1	639.8712768554688	2	639.871182	1277.72781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.176	1	11.176	10.676	11.676	0								0	0	0	0.9696	1	3494	3494		0.35063	0	1		+		16171	11482	9935	9988	15521	15521					0.10005687233365279
KENSGAIEA	9	Unmodified	_KENSGAIEA_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MSMS	HCT116MG_D190212_S1	1	459.72998046875	2	459.729989	917.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.14	1	20.14	19.64	20.64	0								0	0	0	0.094105	1	7023	7023		57.722	0	1				16172	4735	9936	9989	15522	15522					-0.01659986241520528
KENSGAIEA	9	Unmodified	_KENSGAIEA_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	HCT116MG_D190212_S2	2	459.7194519042969	2	459.729989	917.445425	0.1697	7.8017E-05	-0.17731	-8.1516E-05	-0.007613	-3.4999E-06	459.72990783552916	20.695	0.3161	20.316	20.13	20.446	-0.37949					10	5	3	0	0	0	0.1389	1	7239	7239		53.833	0	1	11429000			16173	4735	9936	9989	15523	15523					-0.01659986241520528
KENSHFFVA	9	Unmodified	_KENSHFFVA_					0	0	0		TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	539.769287109375	2	539.769448	1077.52434	0.42639	0.00023015	-0.047918	-2.5865E-05	0.37847	0.00020429	539.7691581894106	35.554	0.30852	35.412	35.283	35.592	-0.14245					11	5	3	0	0	0	0.01405	1	13270	13270		103.35	57.333	1	86620000			16174	2858	9937	9990	15524	15524					-0.011317142165808036
KENSHFFVA	9	Unmodified	_KENSHFFVA_					0	0	0		TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7691040039062	2	539.769448	1077.52434	0.74865	0.0004041	-0.23062	-0.00012448	0.51803	0.00027962	539.7689846841129	35.7	0.24903	35.401	35.326	35.575	-0.29922					17	8	3	0	0	0	0.01405	1	13168	13168		103.35	48.58	1	35352000			16175	2858	9937	9990	15525	15525					-0.011317142165808036
KENSHFFVA	9	Unmodified	_KENSHFFVA_					0	0	0		TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	TBCC|p.N313Efs*4|1|0.2|ENSG00000124659|chr6:42745130-42745137|CAGTTATT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	539.7695922851562	2	539.769448	1077.52434	0.69277	0.00037394	-0.26643	-0.00014381	0.42634	0.00023013	539.7690415976107	35.88	0.19009	35.494	35.381	35.572	-0.38605					10	6	2	0	0	0	0.15273	1	13134	13134		47.749	13.347	1	13153000			16176	2858	9937	9990	15526	15526					-0.011317142165808036
KENSSPSVTSA	11	Unmodified	_KENSSPSVTSA_					0	0	0		ENST00000553636.1_1_14:99959014-99959269:+|nuORF;CCNK|p.C113Mfs*2|1|0.18|ENSG00000090061|chr14:99495547-99495548|-/A|frameshift_variant;CCNK|p.K112Nfs*13|2|0.25|ENSG00000090061|chr14:99495548-99495548|A/-|frameshift_variant;ENST00000556641.5_1_14:99959014-99967243:+|nuORF;ENST00000557165.5_1_14:99959014-99968584:+|nuORF;nc|ENSG00000090061|O75909-2|CCNK;nc|ENSG00000090061|O75909-1|CCNK;CCNK|p.P522Hfs*58|1|0.12|ENSG00000090061|chr14:99510600-99510600|C/-|frameshift_variant;ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK	ENST00000553636.1_1_14:99959014-99959269:+|nuORF	ENST00000553636.1_1_14:99959014-99959269:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	553.7705078125	2	553.769842	1105.52513	0.35676	0.00019757	0.73697	0.00040811	1.0937	0.00060568	553.7700698128409	19.165	0.26019	19.165	19.027	19.287	0					11	4	4	0	0	0	0.35472	1	6651	6651		59.052	21.978	1	4284200			16177	362	9938	9991	15527	15527					-0.023409643581544515
KENSSPSVTSA	11	Unmodified	_KENSSPSVTSA_					0	0	0		ENST00000553636.1_1_14:99959014-99959269:+|nuORF;CCNK|p.C113Mfs*2|1|0.18|ENSG00000090061|chr14:99495547-99495548|-/A|frameshift_variant;CCNK|p.K112Nfs*13|2|0.25|ENSG00000090061|chr14:99495548-99495548|A/-|frameshift_variant;ENST00000556641.5_1_14:99959014-99967243:+|nuORF;ENST00000557165.5_1_14:99959014-99968584:+|nuORF;nc|ENSG00000090061|O75909-2|CCNK;nc|ENSG00000090061|O75909-1|CCNK;CCNK|p.P522Hfs*58|1|0.12|ENSG00000090061|chr14:99510600-99510600|C/-|frameshift_variant;ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK	ENST00000553636.1_1_14:99959014-99959269:+|nuORF	ENST00000553636.1_1_14:99959014-99959269:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7703247070312	2	553.769842	1105.52513	0.32944	0.00018244	-1.7198	-0.00095236	-1.3903	-0.00076992	553.7686829787576	19.695	0.77971	19.32	18.726	19.506	-0.37503					25	14	3	0	0	0	0.098402	1	6846	6846		89.609	43.909	1	16606000			16178	362	9938	9991	15528	15528					-0.023409643581544515
KEPRTFKAKE	10	Unmodified	_KEPRTFKAKE_					0	0	0		nc|ENSG00000122378|Q9BRX8-2|PRXL2A;ENSG00000122378|ENST00000606162|PRXL2A	nc|ENSG00000122378|Q9BRX8-2|PRXL2A	nc|ENSG00000122378|Q9BRX8-2|PRXL2A	MSMS	HCT116MG_D190212_S2	2	617.3490600585938	2	617.351137	1232.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.225	1	40.152	39.652	40.652	-0.072838								0	0	0	0.95089	1	15163	15163		4.5289	0.19963	1				16179	2761	9939	9992	15529	15529					0.08068463834456452
KEPSKPDPT	9	Unmodified	_KEPSKPDPT_					0	0	0			REV__ENSG00000261949|ENST00000610896|GFY	REV__ENSG00000261949|ENST00000610896|GFY	MSMS	HCT116MG_D190212_S3	3	499.7602844238281	2	499.761289	997.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.62	1	30.37	29.87	30.87	-0.24946								0	0	0	0.42657	1	11156	11156		32.305	1.6689	1		+		16180	14422	9940	9993	15530	15530					0.009171598266561887
KEQDRKPE	8	Unmodified	_KEQDRKPE_					0	0	0		ZC3H13|p.E892Q|1|0.07|ENSG00000123200|chr13:45969870-45969870|C/G|missense_variant	ZC3H13|p.E892Q|1|0.07|ENSG00000123200|chr13:45969870-45969870|C/G|missense_variant	ZC3H13|p.E892Q|1|0.07|ENSG00000123200|chr13:45969870-45969870|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2701416015625	2	515.269813	1028.52507	0.41707	0.0002149	0.22385	0.00011534	0.64092	0.00033025	515.2698366060243	15.458	0.20845	15.458	15.327	15.536	0					5	3	2	0	0	0	0.37603	1	5162	5162		52.268	10.313	1	3414000			16181	18707	9941	9994	15531	15531					0.011950804324669662
KEQEAKYQA	9	Unmodified	_KEQEAKYQA_					0	0	0		ENSG00000099940|ENST00000215730|SNAP29	ENSG00000099940|ENST00000215730|SNAP29	ENSG00000099940|ENST00000215730|SNAP29	MULTI-MSMS	HCT116MG_D190212_S1	1	547.7776489257812	2	547.77747	1093.54039	0.48099	0.00026347	0.12676	6.9435E-05	0.60774	0.00033291	547.7773132966926	16.187	0.20845	16.187	16.056	16.265	0					6	3	2	0	0	0	0.068828	1	5452	5452		65.474	35.633	1	4742500			16182	1647	9942	9995	15532	15532					-0.0026405277033063612
KEQEAKYQA	9	Unmodified	_KEQEAKYQA_					0	0	0		ENSG00000099940|ENST00000215730|SNAP29	ENSG00000099940|ENST00000215730|SNAP29	ENSG00000099940|ENST00000215730|SNAP29	MULTI-MSMS	HCT116MG_D190212_S2	2	547.7774047851562	2	547.77747	1093.54039	0.4226	0.00023149	0.14348	7.8597E-05	0.56608	0.00031009	547.7773254722225	16.624	0.2602	16.282	16.1	16.36	-0.34183					9	4	3	0	0	0	2.9811E-09	1	5612	5612		234.93	142.27	1	12983000			16183	1647	9942	9995	15533	15533					-0.0026405277033063612
KEQEKAFFA	9	Unmodified	_KEQEKAFFA_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S1	1	549.28515625	2	549.284931	1096.55531	0.55655	0.00030571	0.91072	0.00050024	1.4673	0.00080595	549.285371713204	33.628	0.31117	33.628	33.452	33.763	0					10	5	3	0	0	0	0.019537	1	12461	12461		96.936	32.975	1	12033000			16184	2498	9943	9996	15534	15534					0.010894390976773138
KEQEKAFFA	9	Unmodified	_KEQEKAFFA_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MSMS	HCT116MG_D190212_S2	2	549.285400390625	2	549.284931	1096.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.972	1	33.797	33.297	34.297	-0.17512								0	0	0	8.7364E-08	1	12623	12623		152.89	70.357	1				16185	2498	9943	9996	15535	15535					0.010894390976773138
KEQEKAFFA	9	Unmodified	_KEQEKAFFA_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S3	3	549.7868041992188	2	549.284931	1096.55531	0.46066	0.00025303	0.21386	0.00011747	0.67452	0.0003705	549.2848611188855	34.121	0.26048	33.827	33.663	33.923	-0.2942					10	4	3	0	0	0	0.012531	1	12561	12561		107.1	34.132	1	8420900			16186	2498	9943	9996	15536	15536					0.010894390976773138
KEQENRKGLIA	11	Unmodified	_KEQENRKGLIA_					0	0	0		ENSG00000116288|ENST00000338639|PARK7;ENST00000460192.5_1_1:8025453-8031070:+|nuORF;ENST00000497113.1_1_1:8022845-8031696:+|nuORF;ENST00000465354.5_1_1:8022845-8031070:+|nuORF	ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	MSMS	HCT116MG_D190212_S1	1	643.3651123046875	2	643.364776	1284.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.789	1	20.789	20.289	21.289	0								0	0	0	0.88598	1	7284	7284		21.799	0.20931	1				16187	2513	9944	9997	15537	15537					0.08402947374884207
KEQENRKGLIA	11	Unmodified	_KEQENRKGLIA_					0	0	0		ENSG00000116288|ENST00000338639|PARK7;ENST00000460192.5_1_1:8025453-8031070:+|nuORF;ENST00000497113.1_1_1:8022845-8031696:+|nuORF;ENST00000465354.5_1_1:8022845-8031070:+|nuORF	ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	MULTI-MSMS	HCT116MG_D190212_S2	2	643.3653564453125	2	643.364776	1284.715	0.50952	0.00032781	0.38214	0.00024585	0.89166	0.00057366	643.3651927913548	21.505	0.20803	21.121	21.012	21.22	-0.38417					6	3	2	0	0	0	0.036804	1	7596	7596		115.82	58.572	1	13643000			16188	2513	9944	9997	15538	15538					0.08402947374884207
KEQGRLLVA	9	Unmodified	_KEQGRLLVA_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	507.3088073730469	2	507.308741	1012.60293	0.68548	0.00034775	-0.22266	-0.00011296	0.46282	0.00023479	507.30847774578575	29.667	0.20654	29.366	29.237	29.444	-0.30095					8	3	3	0	0	0	0.0096523	1	10880	10880		114.2	48.967	1	36127000			16189	6058	9945	9998	15539	15539					0.0971313808852301
KEQGRLLVA	9	Unmodified	_KEQGRLLVA_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	507.30889892578125	2	507.308741	1012.60293	0.39525	0.00020051	-0.23315	-0.00011828	0.1621	8.2234E-05	507.308562081637	29.502	0.31297	29.266	29.135	29.448	-0.23655					11	5	3	0	0	0	0.27446	1	10747	10747		33.445	0	1	8835500			16190	6058	9945	9998	15540	15540					0.0971313808852301
KEQHHHSPP	9	Unmodified	_KEQHHHSPP_					0	0	0			REV__ENST00000464679.5_1_3:156867367-156867651:-|nuORF	REV__ENST00000464679.5_1_3:156867367-156867651:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	549.2882690429688	2	548.767771	1095.52099	0.4316	0.00023685	-0.67797	-0.00037205	-0.24637	-0.0001352	548.7671774604515	28.313	0.2594	27.983	27.822	28.081	-0.32987					9	4	3	0	0	0	0.19551	1	10290	10290		14.838	0	1	35345000	+		16191	15809	9946	9999	15541	15541					-0.022949642705725637
KEQHHHSPP	9	Unmodified	_KEQHHHSPP_					0	0	0			REV__ENST00000464679.5_1_3:156867367-156867651:-|nuORF	REV__ENST00000464679.5_1_3:156867367-156867651:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	548.767771	1095.52099	0.56808	0.00031174	-1.473	-0.00080834	-0.90493	-0.00049659	549.2682494072911	27.904	0.15629	27.904	27.8	27.956	0	-0.024004	-0.00031072	NaN	14.838	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5533600	+		16192	15809	9946	9999							-0.022949642705725637
KEQIIHHVA	9	Unmodified	_KEQIIHHVA_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150939531-150940017:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	HCT116MG_D190212_S2	2	537.8070068359375	2	537.806365	1073.59818	0.46515	0.00025016	-0.092037	-4.9498E-05	0.37311	0.00020066	537.8063615890069	19.752	0.20836	19.377	19.246	19.455	-0.37503					6	3	2	0	0	0	0.0063854	1	6886	6886		125.53	89.402	1	18738000			16193	3811	9947	10000	15542	15542					0.0643225394574074
KEQIIHHVA	9	Unmodified	_KEQIIHHVA_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150939531-150940017:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	HCT116MG_D190212_S2	2	358.8731994628906	3	358.873336	1073.59818	-0.1744	-6.2586E-05	-0.00028757	-1.032E-07	-0.17468	-6.2689E-05	358.87329718400105	19.752	0.20836	19.377	19.246	19.455	-0.37503					5	3	2	0	0	0	0.2853	1	6895	6895		23.79	8.8326	1	12359000			16194	3811	9947	10000	15543	15543					0.0643225394574074
KEQITQHIA	9	Unmodified	_KEQITQHIA_					0	0	0		LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant;nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000590181.5_1_17:33310024-33316690:+|nuORF	LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant	LIG3|p.A685Pfs*23|1|0.18|ENSG00000005156|chr17:34998663-34998663|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2952880859375	2	534.29583	1066.57711	0.43287	0.00023128	-0.52567	-0.00028086	-0.092804	-4.9585E-05	534.2955100287398	22.42	0.20862	22.405	22.287	22.496	-0.014284					5	3	2	0	0	0	0.031831	1	7882	7882		84.522	38.501	1	4379200			16195	811	9948	10001	15544	15544					0.04648243846236255
KEQLPPLAA	9	Unmodified	_KEQLPPLAA_					0	0	0		ENST00000428135.7_1_7:17979950-17980106:-|nuORF	ENST00000428135.7_1_7:17979950-17980106:-|nuORF	ENST00000428135.7_1_7:17979950-17980106:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	483.784912109375	2	483.784567	965.554582	0.19973	9.6626E-05	0.29031	0.00014045	0.49003	0.00023707	483.78468263434036	36.727	0.72266	36.612	36.343	37.066	-0.11478					19	13	2	0	0	0	0.066823	1	13765	13765		66.457	16.902	1	12491000			16196	7829	9949	10002	15545	15545					0.07042644448608826
KEQLPPLAA	9	Unmodified	_KEQLPPLAA_					0	0	0		ENST00000428135.7_1_7:17979950-17980106:-|nuORF	ENST00000428135.7_1_7:17979950-17980106:-|nuORF	ENST00000428135.7_1_7:17979950-17980106:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.78497314453125	2	483.784567	965.554582	0.17184	8.3134E-05	0.23393	0.00011317	0.40577	0.0001963	483.7845981291346	36.934	0.62411	36.633	36.405	37.029	-0.30113					22	11	3	0	0	0	0.016744	1	13652	13652		99.755	21.027	1	6393000			16197	7829	9949	10002	15546	15546					0.07042644448608826
KEQLPPLAA	9	Unmodified	_KEQLPPLAA_					0	0	0		ENST00000428135.7_1_7:17979950-17980106:-|nuORF	ENST00000428135.7_1_7:17979950-17980106:-|nuORF	ENST00000428135.7_1_7:17979950-17980106:-|nuORF	MSMS	HCT116MG_D190212_S4	4	483.7848205566406	2	483.784567	965.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.079	1	36.695	36.195	37.195	-0.38486								0	0	0	0.2496	1	13594	13594		43.772	12.504	1				16198	7829	9949	10002	15547	15547					0.07042644448608826
KEQPPQLSA	9	Unmodified	_KEQPPQLSA_					0	0	0		ENST00000540059.1_1_19:45648535-45649727:+|nuORF;ENST00000422370.2_1_19:45648535-45649504:+|nuORF;ENSG00000104866|ENST00000221462|PPP1R37	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	499.26953125	2	499.269281	996.52401	0.54168	0.00027044	-0.28676	-0.00014317	0.25491	0.00012727	499.2691059080757	26.318	0.6773	26.169	25.838	26.515	-0.14924					29	12	3	0	0	0	0.30117	1	9444	9444		30.637	6.616	1	10147000			16199	1959	9950	10003	15548	15548					0.02560866063561207
KEQPPQLSA	9	Unmodified	_KEQPPQLSA_					0	0	0		ENST00000540059.1_1_19:45648535-45649727:+|nuORF;ENST00000422370.2_1_19:45648535-45649504:+|nuORF;ENSG00000104866|ENST00000221462|PPP1R37	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	499.2691345214844	2	499.269281	996.52401	0.34627	0.00017288	-0.066473	-3.3188E-05	0.2798	0.00013969	499.2690922221455	26.545	0.36389	26.244	26.026	26.389	-0.30087					12	6	2	0	0	0	0.031831	1	9437	9437		84.522	27.273	1	4479900			16200	1959	9950	10003	15549	15549					0.02560866063561207
KERDKEKKKEK	11	Unmodified	_KERDKEKKKEK_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;ENST00000592488.2_1_19:2113067-2114219:-|nuORF	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-SECPEP	HCT116MG_D190212_S1	1	724.0105590820312	2	723.425365	1444.83618	0.88663	0.00064141	-0.7836	-0.00056688	0.10303	7.4534E-05	723.4246456343474	54.111	1.434	54.111	53.153	54.587	0					62	27	3	0	0	0	0.36447	1	20488	20488		4.5289	0	1	74010000			16201	1147	9951	10004	15550	15550					0.13155150017496453
KEREEKGPG	9	Unmodified	_KEREEKGPG_					0	0	0		ENST00000409897.5_1_2:231281525-231305227:+|nuORF	ENST00000409897.5_1_2:231281525-231305227:+|nuORF	ENST00000409897.5_1_2:231281525-231305227:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.3114624023438	2	515.269813	1028.52507	0.09863	5.0821E-05	0.11726	6.042E-05	0.21589	0.00011124	515.2698405664806	15.683	0.31287	15.349	15.168	15.481	-0.33434					14	5	4	0	0	0	0.051641	1	5217	5217		56.177	0	1	9859600			16202	7733	9952	10005	15551	15551					0.011950804324669662
KERKEDERIWF	11	Unmodified	_KERKEDERIWF_					0	0	0			REV__CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant	REV__CECR2|p.N841Tfs*59|2|0.35|ENSG00000099954|chr22:17542597-17542597|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	768.0662841796875	2	768.401889	1534.78923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.216	1	46.902	46.402	47.402	-0.31455								0	0	0	0.95636	1	17725	17725		2.9952	0	1		+		16203	10144	9953	10006	15552	15552					0.043222904663707595
KERKRRKERKK	11	Unmodified	_KERKRRKERKK_					0	0	0		nc|ENSG00000163081|Q96MF4|CCDC140	nc|ENSG00000163081|Q96MF4|CCDC140	nc|ENSG00000163081|Q96MF4|CCDC140	MSMS	HCT116MG_D190212_S4	4	771.494140625	2	771.494782	1540.97501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.431	1	50.072	49.572	50.572	-0.35878								0	0	0	0.95686	1	18737	18737		2.7352	0	1				16204	9519	9954	10007	15553	15553					0.22616157496327105
KERKWILEILL	11	Unmodified	_KERKWILEILL_					0	0	0			REV__BRPF3|p.R570W|1|0.26|ENSG00000096070|chr6:36207415-36207415|C/T|missense_variant	REV__BRPF3|p.R570W|1|0.26|ENSG00000096070|chr6:36207415-36207415|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	720.951171875	2	720.950487	1439.88642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.825	1	50.511	50.011	51.011	-0.31381								0	0	0	0.95273	1	19176	19176		4.897	1.9018	1		+		16205	10055	9955	10008	15554	15554					0.18407304413335623
KERPPAPSS	9	Unmodified	_KERPPAPSS_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	484.76171875	2	484.761623	967.508694	0.035713	1.7312E-05	0.28957	0.00014037	0.32528	0.00015768	484.7617267629472	14.725	0.4693	14.405	14.244	14.714	-0.31952					12	8	2	0	0	0	0.094138	1	4854	4854		59.368	19.129	1	1289600			16206	3119	9956	10009	15555	15555					0.02363999266378869
KERQRQGEGAP	11	Unmodified	_KERQRQGEGAP_					0	0	0			REV__ENSG00000147869|ENST00000380911|CER1	REV__ENSG00000147869|ENST00000380911|CER1	MSMS	HCT116MG_D190212_S3	3	628.3306884765625	2	628.328724	1254.6429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.774	1	21.786	21.286	22.286	0.011837								0	0	0	0.93552	1	7604	7604		13.906	0.86358	1		+		16207	12526	9957	10010	15556	15556					0.025760330211369364
KERQRQGEGAP	11	Unmodified	_KERQRQGEGAP_					0	0	0			REV__ENSG00000147869|ENST00000380911|CER1	REV__ENSG00000147869|ENST00000380911|CER1	MSMS	HCT116MG_D190212_S3	3	628.3307495117188	2	628.328724	1254.6429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.184	1	24.123	23.623	24.623	-0.061449								0	0	0	0.93552	1	8576	8576		13.906	0.86358	1		+		16208	12526	9957	10010	15557	15557					0.025760330211369364
KERQRQGEGAP	11	Unmodified	_KERQRQGEGAP_					0	0	0			REV__ENSG00000147869|ENST00000380911|CER1	REV__ENSG00000147869|ENST00000380911|CER1	MSMS	HCT116MG_D190212_S4	4	628.3309326171875	2	628.328724	1254.6429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.794	1	23.538	23.038	24.038	-0.25586								0	0	0	0.93552	1	8350	8350		13.906	2.4113	1		+		16209	12526	9957	10010	15558	15558					0.025760330211369364
KERRRCAQL	9	Unmodified	_KERRRCAQL_					0	0	0			REV__ENST00000372692.8_1_9:131446118-131453502:+|nuORF	REV__ENST00000372692.8_1_9:131446118-131453502:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	580.326904296875	2	580.327473	1158.64039	0.59134	0.00034317	-0.62715	-0.00036395	-0.035813	-2.0783E-05	580.3272058429376	48.64	0.30417	48.496	48.338	48.642	-0.1437					8	5	2	0	0	0	0.19461	1	18587	18587		41.84	0	1	39562000	+		16210	15177	9958	10011	15559	15559					0.06741906082493188
KERRRKRREEE	11	Unmodified	_KERRRKRREEE_					0	0	0			REV__ENSG00000140044|ENST00000651602|JDP2	REV__ENSG00000140044|ENST00000651602|JDP2	MSMS	HCT116MG_D190212_S2	2	786.447265625	2	786.445486	1570.87642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.452	1	42.382	41.882	42.882	-0.069984								0	0	0	0.95686	1	16069	16069		2.7352	1.2533	1		+		16211	12284	9959	10012	15560	15560					0.11381509460670713
KESEVVMKF	9	Unmodified	_KESEVVMKF_					0	0	0		ENST00000468892.5_1_3:183907488-183910505:+|nuORF;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	549.243408203125	2	548.788992	1095.56343	0.74082	0.00040655	-0.053644	-2.9439E-05	0.68717	0.00037711	548.7888024057647	37.629	0.15697	37.629	37.55	37.707	0					4	2	2	0	0	0	0.0062959	1	14082	14082		121.5	81.554	1	7613000			16212	4483	9960	10013	15561	15561					0.019472500227720957
KESEVVMKF	9	Unmodified	_KESEVVMKF_					0	0	0		ENST00000468892.5_1_3:183907488-183910505:+|nuORF;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	548.7890014648438	2	548.788992	1095.56343	0.21077	0.00011567	-0.011896	-6.5282E-06	0.19887	0.00010914	548.7891018769417	37.718	0.2567	37.615	37.486	37.743	-0.10318					7	4	2	0	0	0	0.32155	1	14180	14180		28.495	11.382	1	34305000			16213	4483	9960	10013	15562	15562					0.019472500227720957
KESFVTPCGP	10	Unmodified	_KESFVTPCGP_					0	0	0			REV__L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	REV__L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7567138671875	2	532.757692	1063.50083	0.39142	0.00020853	-2.9773	-0.0015862	-2.5859	-0.0013777	532.756033776677	16.154	0.57397	15.82	15.689	16.263	-0.33451					17	10	2	0	0	0	0.76634	1	5507	5507		14.838	0.93222	1	4502500	+		16214	14170	9961	10014	15563	15563					-0.028378960453892432
KESGRLKFDK	10	Unmodified	_KESGRLKFDK_					0	0	0			REV__tr|U7STG6|U7STG6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01477PE=4SV=1	REV__tr|U7STG6|U7STG6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01477PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	403.2324523925781	3	403.2313	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.0256	1	5.7641	5.2641	6.2641	-0.26151								0	0	0	0.96804	1	1838	1838		0.69767	0	1		+		16215	17797	9962	10015	15564	15564					0.07700177317406087
KESGVDIAA	9	Unmodified	_KESGVDIAA_					0	0	0		GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant;ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENST00000460305.1_1_21:34892913-34894585:-|nuORF	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	889.463134765625	1	889.462538	888.455261	1.0149	0.00090269	0.35208	0.00031317	1.367	0.0012159	889.4625653009361	27.611	0.25904	27.269	27.139	27.398	-0.34201					9	4	3	0	0	0	0.0201	1	10041	10041		96.367	11.095	1	30793000			16216	4398	9963	10016	15565	15565					0.006572017638518446
KESGVDIAA	9	Unmodified	_KESGVDIAA_					0	0	0		GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant;ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENST00000460305.1_1_21:34892913-34894585:-|nuORF	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	445.2350769042969	2	445.234907	888.455261	0.29132	0.0001297	0.040624	1.8087E-05	0.33194	0.00014779	445.23485218201125	27.611	0.31011	27.269	27.088	27.398	-0.34201					11	5	3	0	0	0	0.053544	1	10042	10042		72.968	16.791	1	56315000			16217	4398	9963	10016	15566	15566					0.006572017638518446
KESGVDIAA	9	Unmodified	_KESGVDIAA_					0	0	0		GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant;ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENST00000460305.1_1_21:34892913-34894585:-|nuORF	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	445.2348937988281	2	445.234907	888.455261	0.228	0.00010151	-0.14519	-6.4643E-05	0.082813	3.6871E-05	445.2347725358517	27.434	0.41625	27.265	27.068	27.484	-0.16933					15	7	3	0	0	0	0.11363	1	9884	9884		55.503	3.2344	1	17633000			16218	4398	9963	10016	15567	15567					0.006572017638518446
KESGVDIAA	9	Unmodified	_KESGVDIAA_					0	0	0		GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant;ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENST00000460305.1_1_21:34892913-34894585:-|nuORF	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	889.4631958007812	1	889.462538	888.455261	0.97564	0.0008678	0.46874	0.00041692	1.4444	0.0012847	889.4629854403714	27.452	0.26017	27.283	27.12	27.38	-0.16933					7	4	2	0	0	0	0.026999	1	9907	9907		89.401	21.32	1	3108300			16219	4398	9963	10016	15568	15568					0.006572017638518446
KESHFQEAL	9	Unmodified	_KESHFQEAL_					0	0	0		CCDC136|p.V657A|1|0.39|ENSG00000128596|chr7:128810308-128810308|T/C|missense_variant	CCDC136|p.V657A|1|0.39|ENSG00000128596|chr7:128810308-128810308|T/C|missense_variant	CCDC136|p.V657A|1|0.39|ENSG00000128596|chr7:128810308-128810308|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	363.5172119140625	3	363.517218	1087.52982	-0.25566	-9.2937E-05	0.10666	3.8773E-05	-0.149	-5.4165E-05	363.5171851347863	23.468	0.31112	23.083	22.935	23.246	-0.38448					8	5	2	0	0	0	0.1754	1	8384	8384		33.445	5.2113	1	31186000			16220	343	9964	10017	15569	15569					-0.0104403542475211
KESHFQEAL	9	Unmodified	_KESHFQEAL_					0	0	0		CCDC136|p.V657A|1|0.39|ENSG00000128596|chr7:128810308-128810308|T/C|missense_variant	CCDC136|p.V657A|1|0.39|ENSG00000128596|chr7:128810308-128810308|T/C|missense_variant	CCDC136|p.V657A|1|0.39|ENSG00000128596|chr7:128810308-128810308|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	363.517218	1087.52982	-0.11703	-4.2542E-05	0.072849	2.6482E-05	-0.044179	-1.606E-05	363.517130160008	22.819	0.26044	22.819	22.689	22.949	0	-0.13195	-1.9151E-05	NaN	33.445	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17892000			16221	343	9964	10017							-0.0104403542475211
KESHFQEAL	9	Unmodified	_KESHFQEAL_					0	0	0		CCDC136|p.V657A|1|0.39|ENSG00000128596|chr7:128810308-128810308|T/C|missense_variant	CCDC136|p.V657A|1|0.39|ENSG00000128596|chr7:128810308-128810308|T/C|missense_variant	CCDC136|p.V657A|1|0.39|ENSG00000128596|chr7:128810308-128810308|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	363.517218	1087.52982	-0.25566	-9.2937E-05	0.10666	3.8773E-05	-0.149	-5.4165E-05	363.5171851347863	23.468	0.31112	23.083	22.935	23.246	-0.38448	0.13195	1.7722E-05	NaN	33.445	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31186000			16222	343	9964	10017							-0.0104403542475211
KETLLKLV	8	Unmodified	_KETLLKLV_					0	0	0			REV__ENSG00000222046|ENST00000409358|DCDC2B	REV__ENSG00000222046|ENST00000409358|DCDC2B	MSMS	HCT116MG_D190212_S1	1	472.3125305175781	2	472.312961	942.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.63	1	58.63	58.13	59.13	0								0	0	0	0.8837	1	22591	22591		0.69038	0	1		+		16223	14297	9965	10018	15570	15570					0.1377669200512628
KETVFTKSP	9	Unmodified	_KETVFTKSP_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000488906.1_1_17:45236559-45237015:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	518.78759765625	2	518.787307	1035.56006	0.40756	0.00021144	0.073966	3.8372E-05	0.48153	0.00024981	518.7873121734688	23.85	0.26157	23.85	23.679	23.941	0					7	4	2	0	0	0	0.021544	1	8531	8531		94.909	54.669	1	4656600			16224	3697	9966	10019	15571	15571					0.04370323240414109
KETVFTKSP	9	Unmodified	_KETVFTKSP_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000488906.1_1_17:45236559-45237015:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	518.7877197265625	2	518.787307	1035.56006	0.41829	0.000217	0.17641	9.1518E-05	0.5947	0.00030852	518.7873309397914	24.454	0.41745	24.074	23.822	24.239	-0.38003					12	7	2	0	0	0	0.0056195	1	8768	8768		132.22	73.167	1	15129000			16225	3697	9966	10019	15572	15572					0.04370323240414109
KEWPQTHQA	9	Unmodified	_KEWPQTHQA_					0	0	0		ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	MULTI-MSMS	HCT116MG_D190212_S2	2	563.7623291015625	2	562.777805	1123.54106	0.42943	0.00024167	0.18947	0.00010663	0.6189	0.0003483	562.7778299689583	20.847	0.78763	20.465	20.019	20.807	-0.3826					23	14	2	0	0	0	0.13424	2	7343	7280;7343		51.415	26.016	1	6819600			16226	830	9967	10020	15573;15574	15574					-0.015772133306199976
KEYDALKAA	9	Unmodified	_KEYDALKAA_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	HCT116MG_D190212_S1	1	504.7718505859375	2	504.771657	1007.52876	0.38637	0.00019503	0.047434	2.3943E-05	0.4338	0.00021897	504.7715424638354	24.861	0.31422	24.861	24.725	25.04	0					12	5	3	0	0	0	0.0034297	1	8933	8933		159.1	88.769	1	17090000			16227	2185	9968	10021	15575	15575					0.025297502063040156
KEYDALKAA	9	Unmodified	_KEYDALKAA_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	HCT116MG_D190212_S2	2	504.77191162109375	2	504.771657	1007.52876	0.47859	0.00024158	-0.036455	-1.8401E-05	0.44214	0.00022318	504.77154012049914	25.373	0.46931	24.998	24.764	25.233	-0.37521					20	8	4	0	0	0	0.0001093	1	9135	9135		197.81	108.41	1	163310000			16228	2185	9968	10021	15576	15576					0.025297502063040156
KEYDALKAA	9	Unmodified	_KEYDALKAA_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	HCT116MG_D190212_S3	3	504.7718505859375	2	504.771657	1007.52876	0.42389	0.00021397	-0.044291	-2.2357E-05	0.3796	0.00019161	504.77158826913717	25.023	0.36493	24.917	24.735	25.1	-0.10618					18	6	4	0	0	0	0.0035417	1	8897	8897		171.46	97.265	1	49628000			16229	2185	9968	10021	15577	15577					0.025297502063040156
KEYDALKAA	9	Unmodified	_KEYDALKAA_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	HCT116MG_D190212_S4	4	504.771728515625	2	504.771657	1007.52876	0.41986	0.00021193	0.087615	4.4226E-05	0.50748	0.00025616	504.77168232243184	25.26	0.31208	24.98	24.85	25.162	-0.27958					11	5	3	0	0	0	0.0035417	1	8945	8945		171.46	91.868	1	17915000			16230	2185	9968	10021	15578	15578					0.025297502063040156
KEYDGVVVV	9	Unmodified	_KEYDGVVVV_					0	0	0		ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	MULTI-MSMS	HCT116MG_D190212_S1	1	504.2732238769531	2	504.274032	1006.53351	0.15184	7.6567E-05	-0.26016	-0.00013119	-0.10832	-5.4622E-05	504.2734584889336	39.212	0.28625	39.212	39.111	39.398	0					11	6	2	0	0	0	0.034046	1	14708	14708		82.529	21.172	1	51782000			16231	6252	9969	10022	15579	15579					0.03050634349096981
KEYDGVVVV	9	Unmodified	_KEYDGVVVV_					0	0	0		ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	MULTI-MSMS	HCT116MG_D190212_S2	2	504.2736511230469	2	504.274032	1006.53351	0.70146	0.00035373	0.01844	9.2988E-06	0.7199	0.00036303	504.2739471702902	39.277	0.36072	39.2	38.968	39.328	-0.077835					15	6	3	0	0	0	0.034046	1	14764	14764		82.529	24.807	1	128610000			16232	6252	9969	10022	15580	15580					0.03050634349096981
KEYDGVVVV	9	Unmodified	_KEYDGVVVV_					0	0	0		ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	MULTI-MSMS	HCT116MG_D190212_S2	2	1007.5418701171875	1	1007.54079	1006.53351	0.83936	0.00084568	0.048508	4.8874E-05	0.88786	0.00089456	1007.5408015184357	39.264	0.25818	39.186	39.019	39.277	-0.077839					10	4	3	0	0	0	0.0094709	1	14768	14768		114.65	44.317	1	47430000			16233	6252	9969	10022	15581	15581					0.03050634349096981
KEYDGVVVV	9	Unmodified	_KEYDGVVVV_					0	0	0		ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	MULTI-MSMS	HCT116MG_D190212_S3	3	504.2742614746094	2	504.274032	1006.53351	0.31556	0.00015913	0.067428	3.4002E-05	0.38299	0.00019313	504.2739354678788	39.52	0.25565	39.219	39.034	39.29	-0.30137					6	4	2	0	0	0	0.11363	1	14675	14675		55.503	13.547	1	12993000			16234	6252	9969	10022	15582	15582					0.03050634349096981
KEYELFEF	8	Unmodified	_KEYELFEF_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	HCT116MG_D190212_S1	1	552.7659301757812	2	552.76604	1103.51753	0.47826	0.00026437	-0.61613	-0.00034057	-0.13787	-7.6208E-05	552.7657883535367	23.758	0.2616	23.758	23.575	23.837	0					7	4	2	0	0	0	0.55794	1	8485	8485		36.044	15.591	1	12744000			16235	3425	9970	10023	15583	15583					-0.030090718878227563
KEYELFEF	8	Unmodified	_KEYELFEF_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	HCT116MG_D190212_S2	2	552.7660522460938	2	552.76604	1103.51753	0.57928	0.00032021	-0.30124	-0.00016652	0.27803	0.00015369	552.7657439807492	24.176	0.31218	23.796	23.666	23.979	-0.38003					16	5	4	0	0	0	0.3916	1	8654	8654		50.855	2.5092	1	93046000			16236	3425	9970	10023	15584	15584					-0.030090718878227563
KEYELFEF	8	Unmodified	_KEYELFEF_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7655639648438	2	552.76604	1103.51753	0.3584	0.00019811	-0.4058	-0.00022431	-0.047394	-2.6198E-05	552.7656866397718	23.821	0.31276	23.76	23.582	23.895	-0.061447					13	5	3	0	0	0	0.48901	1	8427	8427		42.095	0	1	19698000			16237	3425	9970	10023	15585	15585					-0.030090718878227563
KEYENLKEA	9	Unmodified	_KEYENLKEA_					0	0	0		TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant;ENSG00000183763|ENST00000331456|TRAIP	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	562.2853393554688	2	562.285128	1122.5557	0.49137	0.00027629	-0.042301	-2.3785E-05	0.44907	0.0002525	562.2850016320002	21.035	0.26817	21.035	20.904	21.173	0					9	4	3	0	0	0	0.0036005	1	7386	7386		177.58	59.739	1	15983000			16238	5739	9971	10024	15586	15586					-0.0006718597312556085
KEYENLKEA	9	Unmodified	_KEYENLKEA_					0	0	0		TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant;ENSG00000183763|ENST00000331456|TRAIP	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	562.2853393554688	2	562.285128	1122.5557	0.32733	0.00018406	0.14821	8.3338E-05	0.47555	0.00026739	562.2851638310135	21.578	0.36393	21.193	21.011	21.375	-0.38503					10	6	2	0	0	0	0.0036005	1	7603	7603		177.58	70.013	1	94625000			16239	5739	9971	10024	15587	15587					-0.0006718597312556085
KEYENLKEA	9	Unmodified	_KEYENLKEA_					0	0	0		TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant;ENSG00000183763|ENST00000331456|TRAIP	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	375.85968017578125	3	375.192511	1122.5557	-0.28487	-0.00010688	-0.039446	-1.48E-05	-0.32431	-0.00012168	375.19247062555024	21.578	0.20756	21.193	21.063	21.271	-0.38503					5	3	2	0	0	0	0.19517	1	7587	7587		32.898	4.6641	1	5629900			16240	5739	9971	10024	15588	15588					-0.0006718597312556085
KEYENLKEA	9	Unmodified	_KEYENLKEA_					0	0	0		TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant;ENSG00000183763|ENST00000331456|TRAIP	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	562.28515625	2	562.285128	1122.5557	0.2465	0.00013861	0.11957	6.7232E-05	0.36607	0.00020584	562.2850442914279	20.862	0.41634	20.897	20.714	21.131	0.034473					14	7	3	0	0	0	0.010528	1	7240	7240		112.04	40.333	1	31549000			16241	5739	9971	10024	15589	15589					-0.0006718597312556085
KEYENLKEA	9	Unmodified	_KEYENLKEA_					0	0	0		TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant;ENSG00000183763|ENST00000331456|TRAIP	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	375.1659851074219	3	375.192511	1122.5557	-0.22393	-8.4015E-05	-0.29556	-0.00011089	-0.51949	-0.00019491	375.19229677409106	20.862	0.26017	20.897	20.714	20.975	0.034473					6	4	2	0	0	0	0.22601	1	7244	7244		22.775	6.2091	1	4325100			16242	5739	9971	10024	15590	15590					-0.0006718597312556085
KEYENLKEA	9	Unmodified	_KEYENLKEA_					0	0	0		TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant;ENSG00000183763|ENST00000331456|TRAIP	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	TRAIP|p.F388Lfs*7|1|0.33|ENSG00000183763|chr3:49829689-49829689|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	562.2850341796875	2	562.285128	1122.5557	0.26089	0.00014669	-0.4954	-0.00027856	-0.23451	-0.00013186	562.2849822562159	21.203	0.2597	20.993	20.863	21.123	-0.20959					7	4	2	0	0	0	0.017759	1	7328	7328		98.73	30.892	1	6183200			16243	5739	9971	10024	15591	15591					-0.0006718597312556085
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;ENST00000586558.5_1_19:14522263-14523533:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	HCT116MG_D190212_S1	1	417.2120666503906	3	417.211906	1248.61389	-0.069169	-2.8858E-05	0.45011	0.00018779	0.38094	0.00015893	417.21204462778957	23.184	0.26035	23.184	23.054	23.314	0					11	4	3	0	0	0	0.26536	1	8272	8272		26.021	3.2457	1	7894600			16244	6241	9972	10025	15592	15592					-0.00047504327858405304
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;ENST00000586558.5_1_19:14522263-14523533:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	HCT116MG_D190212_S2	2	417.2119445800781	3	417.211906	1248.61389	0.097103	4.0512E-05	1.0841	0.00045229	1.1812	0.0004928	417.2119057325634	23.861	0.26071	23.478	23.299	23.56	-0.38324					18	4	5	0	0	0	0.066823	1	8527	8527		61.09	26.868	1	62764000			16245	6241	9972	10025	15593	15593					-0.00047504327858405304
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;ENST00000586558.5_1_19:14522263-14523533:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MSMS	HCT116MG_D190212_S2	2	625.3143920898438	2	625.31422	1248.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.873	1	23.49	22.99	23.99	-0.38324								0	0	0	1.3548E-12	1	8528	8528		174.48	91.053	1				16246	6241	9972	10025	15594	15594					-0.00047504327858405304
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;ENST00000586558.5_1_19:14522263-14523533:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MSMS	HCT116MG_D190212_S3	3	417.2120666503906	3	417.211906	1248.61389	0.036279	1.5136E-05	1.3219	0.00055152	1.3582	0.00056666	417.21189973276677	23.201	0.31267	23.161	23.031	23.343	-0.03968					12	5	4	0	0	0	0.29516	1	8205	8205		23.801	5.0798	1	10629000			16247	6241	9972	10025	15595	15595					-0.00047504327858405304
KEYERFSKY	9	Unmodified	_KEYERFSKY_					0	0	0		nc|ENSG00000198563|Q13838-2|DDX39B;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;DDX39B|p.F149Lfs*13|4|0.27|ENSG00000198563|chr6:31536669-31536669|A/-|frameshift_variant;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;ENST00000586558.5_1_19:14522263-14523533:-|nuORF	nc|ENSG00000198563|Q13838-2|DDX39B	nc|ENSG00000198563|Q13838-2|DDX39B	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	417.211906	1248.61389	0.08016	3.3444E-05	-0.034934	-1.4575E-05	0.045226	1.8869E-05	417.2119148772599	23.597	0.2081	23.35	23.22	23.428	-0.24775	0.056625	-0.00029247	NaN	61.09	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1968500			16248	6241	9972	10025							-0.00047504327858405304
KEYKRWVDPPV	11	Unmodified	_KEYKRWVDPPV_					0	0	0			REV__AADACL4|p.D384*|1|0.15|ENSG00000204518|chr1:12666654-12666655|-/T|frameshift_variant	REV__AADACL4|p.D384*|1|0.15|ENSG00000204518|chr1:12666654-12666655|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	708.883056640625	2	708.885344	1415.75613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.36	1	25.36	24.86	25.86	0								0	0	0	0.89672	1	9119	9119		20.415	6.0092	1		+		16249	9812	9973	10026	15596	15596					0.06488708414326538
KEYLQRLFNI	10	Unmodified	_KEYLQRLFNI_					0	0	0			REV__CON__H-INV:HIT000292931	REV__CON__H-INV:HIT000292931	MSMS	HCT116MG_D190212_S3	3	662.3726196289062	2	662.374612	1322.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.713	1	41.41	40.91	41.91	-0.30257								0	0	0	0.94551	1	15517	15517		5.7319	0.43497	1		+	+	16250	10255	9974	10027	15597	15597					0.08621323385614232
KEYLSKVSC	9	Unmodified	_KEYLSKVSC_					0	0	0		ENST00000356464.9_1_12:56435799-56435844:+|nuORF	ENST00000356464.9_1_12:56435799-56435844:+|nuORF	ENST00000356464.9_1_12:56435799-56435844:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	528.7738037109375	2	528.773342	1055.53213	0.47177	0.00024946	0.073678	3.8959E-05	0.54545	0.00028842	528.7733566984384	27.04	0.31659	26.687	26.554	26.871	-0.35254					10	5	3	0	0	0	0.0064252	1	9823	9823		125.18	73.551	1	30146000			16251	7298	9975	10028	15598	15598					0.006586769887007904
KEYLSKVSC	9	Unmodified	_KEYLSKVSC_					0	0	0		ENST00000356464.9_1_12:56435799-56435844:+|nuORF	ENST00000356464.9_1_12:56435799-56435844:+|nuORF	ENST00000356464.9_1_12:56435799-56435844:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	528.773193359375	2	528.773342	1055.53213	0.50322	0.00026609	-0.42363	-0.00022401	0.079583	4.2081E-05	528.7729546117345	26.794	0.20815	26.645	26.515	26.723	-0.14924					5	3	2	0	0	0	0.15915	1	9643	9643		46.475	30.628	1	5048400			16252	7298	9975	10028	15599	15599					0.006586769887007904
KEYLVTVVA	9	Unmodified	_KEYLVTVVA_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	511.30010986328125	2	511.30005	1020.58555	0.26656	0.00013629	-0.27215	-0.00013915	-0.0055964	-2.8614E-06	511.2998638163118	42.903	0.4172	42.903	42.69	43.108	0					13	7	2	0	0	0	0.11363	1	16188	16188		55.503	3.2344	1	14758000			16253	1439	9976	10029	15600	15600					0.07607797762864266
KEYLVTVVA	9	Unmodified	_KEYLVTVVA_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	511.300048828125	2	511.30005	1020.58555	0.33827	0.00017296	0.50107	0.0002562	0.83934	0.00042916	511.30002426367906	42.837	0.51537	42.767	42.585	43.1	-0.069984					17	9	2	0	0	0	0.11363	1	16230	16230		55.503	1.6699	1	57546000			16254	1439	9976	10029	15601	15601					0.07607797762864266
KEYLVTVVA	9	Unmodified	_KEYLVTVVA_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	511.2996826171875	2	511.30005	1020.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.134	1	42.829	42.329	43.329	-0.30472								0	0	0	0.11662	1	16088	16088		53.404	1.1357	1				16255	1439	9976	10029	15602	15602					0.07607797762864266
KEYPAVRY	8	Unmodified	_KEYPAVRY_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	513.7371826171875	2	513.274367	1024.53418	0.28416	0.00014585	0.18527	9.5096E-05	0.46943	0.00024095	513.2746146946986	27.051	0.31547	26.698	26.503	26.818	-0.35254					6	5	2	0	0	0	0.15149	1	9816	9816		74.423	40.32	1	5718900			16256	3438	9977	10030	15603	15603					0.02289473788800933
KFALAIRLK	9	Unmodified	_KFALAIRLK_					0	0	0			REV__tr|U7STF2|U7STF2_FUSNUDUF1456familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01327PE=4SV=1	REV__tr|U7STF2|U7STF2_FUSNUDUF1456familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01327PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	530.35400390625	2	530.355494	1058.69644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.613	1	58.445	57.945	58.945	-0.16845								0	0	0	0.76967	1	22657	22657		2.0598	1.2661	1		+		16257	17796	9978	10031	15604	15604					0.16943482261581266
KFDKKKLRRR	10	Unmodified	_KFDKKKLRRR_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MSMS	HCT116MG_D190212_S3	3	687.9457397460938	2	687.943862	1373.87317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.093	1	41.79	41.29	42.29	-0.30257								0	0	0	0.96377	1	15670	15670		1.6526	0.32309	1		+		16258	12714	9979	10032	15605	15605					0.20118911144572849
KFEPLIEKLL	10	Unmodified	_KFEPLIEKLL_					0	0	0			REV__ADGB|p.K486Rfs*5|1|0.4|ENSG00000118492|chr6:146691255-146691255|A/-|frameshift_variant	REV__ADGB|p.K486Rfs*5|1|0.4|ENSG00000118492|chr6:146691255-146691255|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	615.3797607421875	2	615.378832	1228.74311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.891	1	61.755	61.255	62.255	-0.1364								0	0	0	0.94925	1	23980	23980		4.897	1.3005	1		+		16259	9868	9980	10033	15606	15606					0.13788877302249603
KFESKERTA	9	Unmodified	_KFESKERTA_					0	0	0		nc|ENSG00000182010|Q8IZC4-3|RTKN2;RTKN2|p.I450Lfs*67|1|0.43|ENSG00000182010|chr10:62198390-62198390|T/-|frameshift_variant;nc|ENSG00000182010|Q8IZC4-2|RTKN2;ENSG00000182010|ENST00000373789|RTKN2	nc|ENSG00000182010|Q8IZC4-3|RTKN2	nc|ENSG00000182010|Q8IZC4-3|RTKN2	MSMS	HCT116MG_D190212_S4	4	548.29150390625	2	548.293288	1094.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.462	1	33.08	32.58	33.58	-0.38223								0	0	0	0.74083	1	12182	12182		17.113	1.2657	1				16260	5648	9981	10034	15607	15607					0.02851939983634111
KFEYTSSYK	9	Unmodified	_KFEYTSSYK_					0	0	0			REV__tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	REV__tr|U7SH77|U7SH77_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02212PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	576.7839965820312	2	576.782222	1151.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.185	1	11.895	11.395	12.395	-0.28953								0	0	0	0.76978	1	3973	3973		1.6526	0.17072	1		+		16261	17675	9982	10035	15608	15608					-0.019822844848022214
KFFKPDDERD	10	Unmodified	_KFFKPDDERD_					0	0	0			REV__GLUD2|p.N65K|1|0.2|ENSG00000182890|chrX:121047879-121047879|C/G|missense_variant	REV__GLUD2|p.N65K|1|0.2|ENSG00000182890|chrX:121047879-121047879|C/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	648.380126953125	2	648.814584	1295.61462	0.46208	0.0002998	0.3855	0.00025012	0.84758	0.00054992	649.316618423048	38.875	0.20271	38.493	38.388	38.591	-0.38163					5	3	2	0	0	0	0.31042	1	14244	14244		6.2058	5.0124	1	1086600	+		16262	16851	9983	10036	15609	15609					-0.021367096788253548
KFILWRRFRW	10	Unmodified	_KFILWRRFRW_					0	0	0		ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-7|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923-3|DYSF	ENSG00000135636|ENST00000410020|DYSF	ENSG00000135636|ENST00000410020|DYSF	MSMS	HCT116MG_D190212_S4	4	754.4429931640625	2	754.443498	1506.87244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.986	1	39.607	39.107	40.107	-0.37936								0	0	0	0.96937	1	14655	14655		0.40072	0.050084	1				16263	3365	9984	10037	15610	15610					0.1392811649552641
KFKTKKGVRSS	11	Unmodified	_KFKTKKGVRSS_					0	0	0		tr|U7T0W9|U7T0W9_FUSNUB3/B4tRNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00708PE=4SV=1	tr|U7T0W9|U7T0W9_FUSNUB3/B4tRNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00708PE=4SV=1	tr|U7T0W9|U7T0W9_FUSNUB3/B4tRNA-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00708PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	633.3882446289062	2	633.388054	1264.76155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.144	1	58.144	57.644	58.644	0								0	0	0	0.95273	1	22390	22390		4.897	3.4151	1				16264	18553	9985	10038	15611	15611					0.13976431996798055
KFLAKLLYKRR	11	Unmodified	_KFLAKLLYKRR_					0	0	0			REV__ENSG00000172123|ENST00000304905|SLFN12	REV__ENSG00000172123|ENST00000304905|SLFN12	MSMS	HCT116MG_D190212_S4	4	718.4662475585938	2	718.466638	1434.91872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.397	1	61.137	60.637	61.637	-0.2602								0	0	0	0.96149	1	23161	23161		0.30703	0	1		+		16265	13373	9986	10039	15612	15612					0.21866136606945474
KFLIELKEK	9	Unmodified	_KFLIELKEK_					0	0	0		tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	tr|U7STE7|U7STE7_FUSNUYhcGPDDEXKnucleasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01383PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	574.2810668945312	2	574.357899	1146.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.797	1	33.604	33.104	34.104	-0.19297								0	0	0	0.76849	1	12553	12553		6.2058	0	1				16266	18436	9987	10040	15613	15613					0.1337632161369129
KFLKHYQQNYK	11	Unmodified	_KFLKHYQQNYK_					0	0	0			REV__ENSG00000175318|ENST00000309731|GRAMD2A	REV__ENSG00000175318|ENST00000309731|GRAMD2A	MULTI-MSMS	HCT116MG_D190212_S1	1	748.9030151367188	2	748.904068	1495.79358	0.66444	0.0004976	-1.5062	-0.001128	-0.84172	-0.00063037	748.9029221192155	42.769	0.20865	42.769	42.639	42.847	0					5	3	2	0	0	0	0.71776	1	16169	16169		15.248	6.5031	1	12909000	+		16267	13510	9988	10041	15614	15614					0.06551799679937176
KFLQEEDPV	9	Unmodified	_KFLQEEDPV_					0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MSMS	HCT116MG_D190212_S1	1	552.7803344726562	2	552.782222	1103.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.823	1	33.823	33.323	34.323	0								0	0	0	0.71946	1	12530	12530		18.146	0.7037	1		+		16268	11062	9989	10042	15615	15615					0.0022571551517103217
KFPNAKLEPL	10	Unmodified	_KFPNAKLEPL_					0	0	0			REV__ENSG00000185043|ENST00000328649|CIB1	REV__ENSG00000185043|ENST00000328649|CIB1	MSMS	HCT116MG_D190212_S1	1	386.22979736328125	3	386.229008	1155.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.2	1	10.2	9.6998	10.7	0								0	0	0	0.96183	1	3118	3118		2.086	0	1		+		16269	13824	9990	10043	15616	15616					0.09358864436876502
KFRAGARSRA	10	Unmodified	_KFRAGARSRA_					0	0	0		ENST00000550536.5_2_12:70133307-70133607:+|nuORF	ENST00000550536.5_2_12:70133307-70133607:+|nuORF	ENST00000550536.5_2_12:70133307-70133607:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	560.327880859375	2	560.328331	1118.64211	0.2181	0.00012221	-0.7257	-0.00040663	-0.5076	-0.00028442	560.3277458456156	48.178	0.6701	48.178	47.893	48.563	0					17	12	2	0	0	0	0.87239	1	18296	18296		5.2969	0.39987	1	15064000			16270	8751	9991	10044	15617	15617					0.08753283162741354
KFSFYLASG	9	Unmodified	_KFSFYLASG_					0	0	0			REV__ENSG00000269743|ENST00000594199|SLC25A53	REV__ENSG00000269743|ENST00000594199|SLC25A53	MSMS	HCT116MG_D190212_S4	4	510.2612609863281	2	510.263468	1018.51238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.127	1	29.77	29.27	30.27	-0.3571								0	0	0	0.69648	1	10909	10909		19.257	1.1106	1		+		16271	14436	9992	10045	15618	15618					0.003866690402333006
KFSRILTPK	9	Unmodified	_KFSRILTPK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	363.8983154296875	3	363.897481	1088.67061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.018	1	30.018	29.518	30.518	0								0	0	0	0.76971	1	10994	10994		1.9064	0.71303	1				16272	5342	9993	10046	15619	15619					0.12982588019326613
KFVKAIVNS	9	Unmodified	_KFVKAIVNS_					0	0	0		ENSG00000163440|ENST00000295645|PDCL2	ENSG00000163440|ENST00000295645|PDCL2	ENSG00000163440|ENST00000295645|PDCL2	MSMS	HCT116MG_D190212_S4	4	503.305908203125	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.523	1	55.211	54.711	55.711	-0.312								0	0	0	0.76849	1	20792	20792		6.2058	1.4498	1				16273	4600	9994	10047	15620	15620					0.09974923719619255
KFVKKHLNFY	10	Unmodified	_KFVKKHLNFY_					0	0	0			REV__ENST00000227758.6_3_11:102248859-102248973:+|nuORF	REV__ENST00000227758.6_3_11:102248859-102248973:+|nuORF	MSMS	HCT116MG_D190212_S1	1	441.9256896972656	3	441.923919	1322.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.028	1	11.028	10.528	11.528	0								0	0	0	0.97045	1	3434	3434		0.15932	0.01943	1		+		16274	14539	9995	10048	15621	15621					0.10146234973490209
KFWESPETV	9	Unmodified	_KFWESPETV_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.N815Kfs*2|1|0.32|ENSG00000173473|chr3:47636068-47636069|-/T|frameshift_variant	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MSMS	HCT116MG_D190212_S1	1	561.6600952148438	2	561.776939	1121.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.248	1	42.248	41.748	42.748	0								0	0	0	0.22299	1	15930	15930		45.7	7.7256	1				16275	5289	9996	10049	15622	15622					-0.016582671392370685
KGAGKATS	8	Unmodified	_KGAGKATS_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	HCT116MG_D190212_S1	1	719.4059448242188	1	719.404629	718.397353	0.58495	0.00042082	2.2046	0.001586	2.7896	0.0020069	719.406120154419	48.383	0.30782	48.383	48.203	48.511	0					9	5	2	0	0	0	0.86858	1	18413	18413		2.0598	2.0598	1	36612000	+		16276	11881	9997	10050	15623	15623					0.026889846290828245
KGALKIRP	8	Unmodified	_KGALKIRP_					0	0	0			REV__nc|ENSG00000100150|O75140-2|DEPDC5	REV__nc|ENSG00000100150|O75140-2|DEPDC5	MULTI-MSMS	HCT116MG_D190212_S3	3	882.5867919921875	1	882.588348	881.581071	1.0147	0.00089559	-0.7648	-0.00067501	0.24993	0.00022059	882.5854129673494	60.299	3.5211	60.047	58.008	61.529	-0.25233					164	67	3	0	0	0	0.87635	1	22913	22913		0.69038	0	1	21512000	+		16277	11068	9998	10051	15624	15624					0.13554378130606892
KGGFKNFG	8	Unmodified	_KGGFKNFG_					0	0	0			REV__ENST00000570090.1_1_16:31196495-31198162:+|nuORF	REV__ENST00000570090.1_1_16:31196495-31198162:+|nuORF	MSMS	HCT116MG_D190212_S1	1	427.75152587890625	2	427.729595	853.444637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.891	1	15.891	15.391	16.391	0								0	0	0	0.85589	1	5311	5311		18.135	7.9516	1		+		16278	16573	9999	10052	15625	15625					0.012052639001012722
KGGGPGHG	8	Unmodified	_KGGGPGHG_					0	0	0			REV__ENST00000554624.5_1_14:90722881-90729792:+|nuORF	REV__ENST00000554624.5_1_14:90722881-90729792:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	666.33349609375	1	666.331799	665.324522	0.63006	0.00041983	1.5179	0.0010114	2.1479	0.0014312	666.3327151952693	60.723	0.30676	60.723	60.543	60.85	0					9	5	2	0	0	0	0.87576	1	23420	23420		0.79363	0.79363	1	46549000	+		16279	16454	10000	10053	15626	15626					-0.02152724373672754
KGGGPGHG	8	Unmodified	_KGGGPGHG_					0	0	0			REV__ENST00000554624.5_1_14:90722881-90729792:+|nuORF	REV__ENST00000554624.5_1_14:90722881-90729792:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	666.4345092773438	1	666.331799	665.324522	0.63006	0.00041983	1.5179	0.0010114	2.1479	0.0014312	666.3327151952693	60.723	0.30676	60.723	60.543	60.85	0					9	5	2	0	0	0	0.33574	1	23399	23399		0.79363	0.79363	1	46549000	+		16280	16454	10000	10053	15627	15627					-0.02152724373672754
KGGGPGHG	8	Unmodified	_KGGGPGHG_					0	0	0			REV__ENST00000554624.5_1_14:90722881-90729792:+|nuORF	REV__ENST00000554624.5_1_14:90722881-90729792:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	666.331799	665.324522	0.45756	0.00030489	2.281	0.0015199	2.7385	0.0018248	666.333137818236	60.714	0.41228	60.566	60.424	60.836	-0.14852	-0.078815	0.00015273	NaN	0.79363	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32566000	+		16281	16454	10000	10053							-0.02152724373672754
KGGQGRPR	8	Unmodified	_KGGQGRPR_					0	0	0			REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|18|2|sense	REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|18|2|sense	MULTI-MSMS	HCT116MG_D190212_S4	4	428.2487487792969	2	428.249018	854.483482	0.1489	6.3766E-05	-0.02041	-8.7404E-06	0.12849	5.5025E-05	428.2489378348724	48.284	0.74656	47.917	47.419	48.166	-0.36727					22	14	3	0	0	0	0.8672	1	17733	17733		2.3027	0	1	10397000	+		16282	17633	10001	10054	15628	15628					0.05041989254459622
KGGQGRPR	8	Unmodified	_KGGQGRPR_					0	0	0			REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|18|2|sense	REV__THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|18|2|sense	MSMS	HCT116MG_D190212_S4	4	428.26715087890625	2	428.249018	854.483482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.132	1	46.761	46.261	47.261	-0.37038								0	0	0	0.8837	1	17424	17424		2.3027	0	1		+		16283	17633	10001	10054	15629	15629					0.05041989254459622
KGGWKERNV	9	Unmodified	_KGGWKERNV_					0	0	0		DLG2|p.V595Sfs*16|1|0.37|ENSG00000150672|chr11:83541701-83541701|C/-|frameshift_variant	DLG2|p.V595Sfs*16|1|0.37|ENSG00000150672|chr11:83541701-83541701|C/-|frameshift_variant	DLG2|p.V595Sfs*16|1|0.37|ENSG00000150672|chr11:83541701-83541701|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.53515625	2	537.296165	1072.57778	0.21233	0.00011408	-2.5885	-0.0013908	-2.3762	-0.0012767	537.2946592993997	49.586	0.30505	49.422	49.228	49.534	-0.16369					9	5	2	0	0	0	0.20889	1	18989	18989		24.021	9.1823	1	32096000			16284	683	10002	10055	15630	15630					0.044390832859335205
KGHRAGLP	8	Unmodified	_KGHRAGLP_					0	0	0		nc|ENSG00000274611|Q8IZP1-2|TBC1D3;ENSG00000275954|ENST00000620210|TBC1D3F;USP6|p.R1206Gfs*38|1|0.11|ENSG00000129204|chr17:5170574-5170574|G/-|frameshift_variant;USP6|p.E983Gfs*34|1|0.12|ENSG00000129204|chr17:5162911-5162912|-/G|frameshift_variant;USP6|p.L931Pfs*6|1|0.06|ENSG00000129204|chr17:5155567-5155568|CA/-|frameshift_variant;nc|ENSG00000129204|P35125-3|USP6;ENSG00000273513|ENST00000620247|TBC1D3K;nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000260287|ENST00000569055|TBC1D3G;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000274933|ENST00000621034|TBC1D3I;USP6|p.G465Afs*41|1|0.33|ENSG00000129204|chr17:5139566-5139566|G/-|frameshift_variant;USP6|p.H470Ifs*36|1|0.24|ENSG00000129204|chr17:5139580-5139580|C/-|frameshift_variant;ENSG00000129204|ENST00000574788|USP6	nc|ENSG00000274611|Q8IZP1-2|TBC1D3	nc|ENSG00000274611|Q8IZP1-2|TBC1D3	MSMS	HCT116MG_D190212_S4	4	418.2464599609375	2	418.248486	834.48242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.327	1	37.944	37.444	38.444	-0.38283								0	0	0	0.8837	1	14042	14042		2.5775	0.73324	1				16285	3023	10003	10056	15631	15631					0.05855774885549181
KGITLKRKGRF	11	Unmodified	_KGITLKRKGRF_					0	0	0			REV__ENST00000554504.1_1_14:102290460-102290538:+|nuORF	REV__ENST00000554504.1_1_14:102290460-102290538:+|nuORF	MSMS	HCT116MG_D190212_S2	2	652.41845703125	2	652.419688	1302.82482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.508	1	29.207	28.707	29.707	-0.30095								0	0	0	0.95581	1	10812	10812		3.2813	0.54611	1		+		16286	16449	10004	10057	15632	15632					0.18552417504679397
KGKFVTKDQAN	11	Unmodified	_KGKFVTKDQAN_					0	0	0		ENSG00000137440|ENST00000382333|FGFBP1	ENSG00000137440|ENST00000382333|FGFBP1	ENSG00000137440|ENST00000382333|FGFBP1	MSMS	HCT116MG_D190212_S1	1	618.3414916992188	2	618.340769	1234.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.322	1	23.322	22.822	23.822	0								0	0	0	0.94538	1	8300	8300		8.7454	0.58988	1				16287	3476	10005	10058	15633	15633					0.05903873454803943
KGKGLIAA	8	Unmodified	_KGKGLIAA_					0	0	0		ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	MSMS	HCT116MG_D190212_S4	4	379.25909423828125	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.397	1	57.102	56.602	57.602	-0.29465								0	0	0	0.8837	1	21543	21543		0.79363	0	1				16288	8998	10006	10059	15634	15634					0.09779024939541614
KGKGLIAA	8	Unmodified	_KGKGLIAA_					0	0	0		ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	MSMS	HCT116MG_D190212_S4	4	379.2486267089844	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.034	1	57.745	57.245	58.245	-0.28879								0	0	0	0.8837	1	21800	21800		0.79363	0	1				16289	8998	10006	10059	15635	15635					0.09779024939541614
KGKKIKLEIQN	11	Unmodified	_KGKKIKLEIQN_					0	0	0		tr|U7STK2|U7STK2_FUSNU16SrRNA(-N2)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01088PE=4SV=1	tr|U7STK2|U7STK2_FUSNU16SrRNA(-N2)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01088PE=4SV=1	tr|U7STK2|U7STK2_FUSNU16SrRNA(-N2)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01088PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	649.9054565429688	2	649.911362	1297.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.522	1	24.522	24.022	25.022	0								0	0	0	0.95196	1	8782	8782		5.2969	0	1				16290	18444	10007	10060	15636	15636					0.17117871828077114
KGKKKRTRKKK	11	Unmodified	_KGKKKRTRKKK_					0	0	0		KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	693.4796752929688	2	693.480611	1384.94667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.751	1	37.648	37.148	38.148	-0.10318								0	0	0	0.96157	1	14161	14161		0.26902	0.26902	1				16291	1080	10008	10061	15637	15637					0.2695945958703305
KGKKLTFEYR	10	Unmodified	_KGKKLTFEYR_					0	0	0		nc|ENSG00000119383|Q15257-4|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	nc|ENSG00000119383|Q15257-4|PTPA	MSMS	HCT116MG_D190212_S1	1	635.4953002929688	2	635.36933	1268.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.324	1	24.324	23.824	24.824	0								0	0	0	0.92917	1	8703	8703		9.3831	0.63772	1				16292	2636	10009	10062	15638	15638					0.10049340731166012
KGKKSIQIR	9	Unmodified	_KGKKSIQIR_					0	0	0			REV__NOVA1|p.E462K|1|0.39|ENSG00000139910|chr14:26448099-26448099|C/T|missense_variant	REV__NOVA1|p.E462K|1|0.39|ENSG00000139910|chr14:26448099-26448099|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	529.3455810546875	2	529.345658	1056.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.733	1	28.733	28.233	29.233	0								0	0	0	0.76849	1	10475	10475		6.2058	1.4498	1		+		16293	17352	10010	10063	15639	15639					0.15069106250848563
KGKKYFCFVF	10	Unmodified	_KGKKYFCFVF_					0	0	0			REV__ENST00000580151.5_1_17:73282751-73284642:-|nuORF	REV__ENST00000580151.5_1_17:73282751-73284642:-|nuORF	MSMS	HCT116MG_D190212_S1	1	634.1121215820312	2	633.83882	1265.66309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.59	1	23.59	23.09	24.09	0								0	0	0	0.90475	1	8408	8408		14.838	6.0929	1		+		16294	16621	10011	10064	15640	15640					0.04088112427371016
KGKLKNKG	8	Unmodified	_KGKLKNKG_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-4|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	MULTI-MSMS	HCT116MG_D190212_S2	2	872.5661010742188	1	872.567612	871.560336	0.92227	0.00080474	-2.5797	-0.002251	-1.6575	-0.0014462	872.5653168658037	58.786	0.76218	58.62	58.201	58.963	-0.1653					21	14	2	0	0	0	0.87635	1	22816	22816		0.69038	0	1	8797200			16295	3829	10012	10065	15641	15641					0.11941787750936328
KGKLWLFGKKP	11	Unmodified	_KGKLWLFGKKP_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MSMS	HCT116MG_D190212_S1	1	651.3555908203125	2	651.408258	1300.80196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.737	1	23.737	23.237	24.237	0								0	0	0	0.95113	1	8467	8467		5.7319	0	1				16296	3517	10013	10066	15642	15642					0.16359398387203328
KGKPLRIA	8	Unmodified	_KGKPLRIA_					0	0	0			REV__ENSG00000102243|ENST00000370634|VGLL1	REV__ENSG00000102243|ENST00000370634|VGLL1	MULTI-MSMS	HCT116MG_D190212_S3	3	882.5863037109375	1	882.588348	881.581071	1.0147	0.00089559	-0.7648	-0.00067501	0.24993	0.00022059	882.5854129673494	60.299	3.5211	60.047	58.008	61.529	-0.25233					164	67	3	0	0	0	0.88026	2	22662	22662;23405		0	0	1	21512000	+		16297	11147	10014	10067	15643;15644	15643					0.13554378130584155
KGKRLPRAL	9	Unmodified	_KGKRLPRAL_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MSMS	HCT116MG_D190212_S2	2	519.5203247070312	2	519.848368	1037.68218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.402	1	51.224	50.724	51.724	-0.17868								0	0	0	0.76694	1	19721	19721		11.64	3.047	1				16298	1171	10015	10068	15645	15645					0.1648482983332542
KGKRRRKKLI	10	Unmodified	_KGKRRRKKLI_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MSMS	HCT116MG_D190212_S1	1	641.9491577148438	2	641.948947	1281.88334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.205	1	26.205	25.705	26.705	0								0	0	0	0.96377	1	9459	9459		1.6526	0.32309	1				16299	6616	10016	10069	15646	15646					0.25367518869848027
KGKRRSKKRRK	11	Unmodified	_KGKRRSKKRRK_					0	0	0		ZC3H4|p.E114G|1|0.31|ENSG00000130749|chr19:47094429-47094429|T/C|missense_variant	ZC3H4|p.E114G|1|0.31|ENSG00000130749|chr19:47094429-47094429|T/C|missense_variant	ZC3H4|p.E114G|1|0.31|ENSG00000130749|chr19:47094429-47094429|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	714.47998046875	2	714.478934	1426.94332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.231	1	39.231	38.731	39.731	0								0	0	0	0.96157	1	14711	14711		0.26902	0.26902	1				16300	18708	10017	10070	15647	15647					0.24692209533054665
KGKSDNSDSDS	11	Unmodified	_KGKSDNSDSDS_					0	0	0		DSPP|p.S549N|1|0.33|ENSG00000152591|chr4:87614308-87614308|G/A|missense_variant	DSPP|p.S549N|1|0.33|ENSG00000152591|chr4:87614308-87614308|G/A|missense_variant	DSPP|p.S549N|1|0.33|ENSG00000152591|chr4:87614308-87614308|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	570.6901245117188	2	570.244189	1138.47382	0.4866	0.00027748	0.27346	0.00015594	0.76006	0.00043342	570.2444196118203	24.542	0.26119	24.542	24.412	24.673	0					7	4	2	0	0	0	0.73696	1	8764	8764		8.1555	0.24537	1	6085400			16301	734	10018	10071	15648	15648					-0.08987333122900054
KGKSEKKRKL	10	Unmodified	_KGKSEKKRKL_					0	0	0		NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	401.2616271972656	3	401.262823	1200.76664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.201	1	56.9	56.4	57.4	-0.3004								0	0	0	0.96836	1	21464	21464		0.62683	0	1				16302	9706	10019	10072	15649	15649					0.17428735859425615
KGLCLKKTVS	10	Unmodified	_KGLCLKKTVS_					0	0	0		nc|ENSG00000158402|P30307-4|CDC25C;nc|ENSG00000158402|P30307-3|CDC25C;nc|ENSG00000158402|P30307-2|CDC25C;ENSG00000158402|ENST00000323760|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	nc|ENSG00000158402|P30307-4|CDC25C	MSMS	HCT116MG_D190212_S1	1	538.7833251953125	2	538.828452	1075.64235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.445	1	20.445	19.945	20.945	0								0	0	0	0.95507	1	7146	7146		3.5965	1.019	1				16303	4369	10020	10073	15650	15650					0.1075552204770247
KGLGGTRH	8	Unmodified	_KGLGGTRH_					0	0	0		ENST00000305850.9_1_16:81040200-81040455:+|nuORF	ENST00000305850.9_1_16:81040200-81040455:+|nuORF	ENST00000305850.9_1_16:81040200-81040455:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	413.2384338378906	2	413.238119	824.461684	-0.12428	-5.1355E-05	0.58115	0.00024016	0.45688	0.0001888	413.23831847044573	48.982	0.25939	48.982	48.819	49.079	0					7	4	2	0	0	0	0.85329	1	18677	18677		4.756	4.756	1	9666800			16304	7025	10021	10074	15651	15651					0.04243184505901354
KGLGGTRH	8	Unmodified	_KGLGGTRH_					0	0	0		ENST00000305850.9_1_16:81040200-81040455:+|nuORF	ENST00000305850.9_1_16:81040200-81040455:+|nuORF	ENST00000305850.9_1_16:81040200-81040455:+|nuORF	MSMS	HCT116MG_D190212_S4	4	413.2372131347656	2	413.238119	824.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.869	1	49.507	49.007	50.007	-0.36213								0	0	0	0.8837	1	18510	18510		4.3292	2.0265	1				16305	7025	10021	10074	15652	15652					0.04243184505901354
KGLHLITAML	10	Unmodified	_KGLHLITAML_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MSMS	HCT116MG_D190212_S4	4	548.829833984375	2	548.830995	1095.64744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.325	1	43.951	43.451	44.451	-0.37373								0	0	0	0.95351	1	16326	16326		3.9444	1.3669	1		+		16306	11885	10022	10075	15653	15653					0.10343825910354099
KGLIGRSRS	9	Unmodified	_KGLIGRSRS_					0	0	0			REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	HCT116MG_D190212_S2	2	487.29864501953125	2	487.298707	972.582862	-0.10021	-4.8834E-05	0.13058	6.363E-05	0.030363	1.4796E-05	487.29869908798713	49.774	1.599	49.61	49.33	50.929	-0.16369					56	30	2	0	0	0	0.68648	1	19020	19020		6.2058	0.97511	1	1756799999.9999998	+		16307	11989	10023	10076	15654	15654					0.09547387148563757
KGLIGRSRS	9	Unmodified	_KGLIGRSRS_					0	0	0			REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	HCT116MG_D190212_S3	3	487.2987365722656	2	487.298707	972.582862	0.078297	3.8154E-05	0.24964	0.00012165	0.32794	0.0001598	487.2987268626199	50.451	1.6716	50.136	49.76	51.432	-0.31421					75	31	4	0	0	0	0.68648	1	18927	18927		6.2058	6.2058	1	148970000	+		16308	11989	10023	10076	15655	15655					0.09547387148563757
KGLIGRSRS	9	Unmodified	_KGLIGRSRS_					0	0	0			REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	487.298707	972.582862	-0.19794	-9.6456E-05	0.4511	0.00021982	0.25316	0.00012337	487.2988510729331	50.379	2.0402	50.02	49.517	51.557	-0.35878	-0.058004	5.9247E-05	NaN	6.2058	104	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419730000	+		16309	11989	10023	10076							0.09547387148563757
KGLKTRFIVAK	11	Unmodified	_KGLKTRFIVAK_					0	0	0			REV__ENSG00000181374|ENST00000225844|CCL13	REV__ENSG00000181374|ENST00000225844|CCL13	MSMS	HCT116MG_D190212_S4	4	631.1104125976562	2	630.911165	1259.80778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.587	1	39.206	38.706	39.706	-0.38055								0	0	0	0.95113	1	14546	14546		5.7319	0	1		+		16310	13686	10024	10077	15656	15656					0.1882649689889604
KGLQRRGA	8	Unmodified	_KGLQRRGA_					0	0	0			REV__ENSG00000178404|ENST00000322630|CEP295NL	REV__ENSG00000178404|ENST00000322630|CEP295NL	MULTI-MSMS	HCT116MG_D190212_S1	1	443.272216796875	2	443.272493	884.530432	-0.091676	-4.0637E-05	0.54784	0.00024284	0.45616	0.0002022	443.2727228404647	51.22	0.67065	51.22	50.73	51.4	0					16	12	2	0	0	0	0.85329	1	19433	19433		4.756	2.4533	1	51039000	+		16311	13604	10025	10078	15657	15657					0.08354848805606707
KGLRDQEAEQE	11	Unmodified	_KGLRDQEAEQE_					0	0	0		RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant;nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	434.8822021484375	3	434.880996	1301.62116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6166	1	3.6166	3.1166	4.1166	0								0	0	0	0.96149	1	1080	1080		0.08335	0	1				16312	1910	10026	10079	15658	15658					-0.017588165180768556
KGPAMDKIFV	10	Oxidation (M)	_KGPAM(Oxidation (M))DKIFV_		KGPAM(1)DKIFV		KGPAM(79)DKIFV	0	0	1			REV__ENSG00000197599|ENST00000389176|CCDC154	REV__ENSG00000197599|ENST00000389176|CCDC154	MULTI-MSMS	HCT116MG_D190212_S1	1	561.3043212890625	2	561.30481	1120.59507	0.31427	0.0001764	0.10943	6.1423E-05	0.4237	0.00023782	561.3048590859391	51.626	0.35555	51.626	51.451	51.807	0					8	6	2	0	0	0	0.076419	1	19738	19738		78.728	17.371	1	47871000	+		16313	14081	10027	10080	15659	15659		161			0.039592427767274785
KGPAMDKIFV	10	Oxidation (M)	_KGPAM(Oxidation (M))DKIFV_		KGPAM(1)DKIFV		KGPAM(66)DKIFV	0	0	1			REV__ENSG00000197599|ENST00000389176|CCDC154	REV__ENSG00000197599|ENST00000389176|CCDC154	MULTI-MSMS	HCT116MG_D190212_S2	2	561.3047485351562	2	561.30481	1120.59507	0.52215	0.00029308	-0.10301	-5.7823E-05	0.41913	0.00023526	561.3046870598436	51.837	0.4109	51.653	51.424	51.835	-0.18369					18	7	4	0	0	0	0.13861	1	19881	19881		66.457	7.7779	1	127450000	+		16314	14081	10027	10080	15660	15660		161			0.039592427767274785
KGPAMDKIFV	10	Oxidation (M)	_KGPAM(Oxidation (M))DKIFV_					0	0	1			REV__ENSG00000197599|ENST00000389176|CCDC154	REV__ENSG00000197599|ENST00000389176|CCDC154	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	561.30481	1120.59507	0.31427	0.0001764	0.10943	6.1423E-05	0.4237	0.00023782	561.3048590859391	51.626	0.35555	51.626	51.451	51.807	0	-0.013398	0.00017163	NaN	78.728	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47871000	+		16315	14081	10027	10080				161			0.039592427767274785
KGPHEQVH	8	Unmodified	_KGPHEQVH_					0	0	0			REV__nc|ENSG00000160271|Q12967-2|RALGDS	REV__nc|ENSG00000160271|Q12967-2|RALGDS	MULTI-MSMS	HCT116MG_D190212_S1	1	466.2408752441406	2	466.240858	930.467164	0.25496	0.00011887	-0.16134	-7.5224E-05	0.093619	4.3649E-05	466.2407424087556	15.197	0.26101	15.197	15.066	15.327	0					10	4	3	0	0	0	0.46267	1	5033	5033		44.407	4.4497	1	38956000	+		16316	17182	10028	10081	15661	15661					-0.0008513670228467163
KGPKDLLGGAP	11	Unmodified	_KGPKDLLGGAP_					0	0	0			REV__ENST00000557300.1_1_14:65519909-65528027:+|nuORF	REV__ENST00000557300.1_1_14:65519909-65528027:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	526.808349609375	2	526.808574	1051.60259	0.38275	0.00020164	-0.13115	-6.909E-05	0.2516	0.00013255	526.8084932934898	29.918	1.0916	29.561	28.869	29.961	-0.3571					29	20	2	0	0	0	0.59379	1	10653	10653		36.127	1.7253	1	3387000	+		16317	14405	10029	10082	15662	15662					0.07885718368675043
KGPKRKGLF	9	Unmodified	_KGPKRKGLF_					0	0	0			REV__ENSG00000153930|ENST00000682825|ANKFN1	REV__ENSG00000153930|ENST00000682825|ANKFN1	MSMS	HCT116MG_D190212_S2	2	515.8296508789062	2	515.829643	1029.64473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.092	1	47.959	47.459	48.459	-0.13281								0	0	0	0.76739	1	18363	18363		10.074	1.4806	1		+		16318	12663	10030	10083	15663	15663					0.1310973856768669
KGPLKEQPLP	10	Unmodified	_KGPLKEQPLP_					0	0	0			REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MSMS	HCT116MG_D190212_S4	4	553.8297729492188	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.87	1	46.498	45.998	46.998	-0.37134								0	0	0	0.95351	1	17318	17318		3.9444	0.3479	1		+		16319	17295	10031	10084	15664	15664					0.10094577919812764
KGPNQGRL	8	Unmodified	_KGPNQGRL_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MSMS	HCT116MG_D190212_S1	1	435.250732421875	2	435.251226	868.487899	-0.0559	-2.4331E-05	-0.074513	-3.2432E-05	-0.13041	-5.6763E-05	435.2510784619944	43.005	1.2433	43.005	42.538	43.781	0					45	23	3	0	0	0	0.86564	1	16230	16230		2.5775	0	1	18404000			16320	5936	10032	10085	15665	15665					0.048394536773685104
KGPPVNVT	8	Unmodified	_KGPPVNVT_					0	0	0		nc|ENSG00000145451|O75311-2|GLRA3;nc|ENSG00000101958|P23416-2|GLRA2;ENSG00000101958|ENST00000218075|GLRA2;ENSG00000145451|ENST00000274093|GLRA3	nc|ENSG00000145451|O75311-2|GLRA3	nc|ENSG00000145451|O75311-2|GLRA3	MULTI-MSMS	HCT116MG_D190212_S2	2	406.23724365234375	2	406.237253	810.459953	-0.24549	-9.9727E-05	0.55358	0.00022489	0.30809	0.00012516	406.2373213521971	21.734	0.20776	21.349	21.219	21.427	-0.38503					5	3	2	0	0	0	0.66231	1	7693	7693		26.884	3.7352	1	7641600			16321	1817	10033	10086	15666	15666					0.047141306972775965
KGPRRRWR	8	Unmodified	_KGPRRRWR_					0	0	0			REV__ENST00000514589.5_1_4:76439408-76439555:-|nuORF	REV__ENST00000514589.5_1_4:76439408-76439555:-|nuORF	MSMS	HCT116MG_D190212_S3	3	371.2276306152344	3	371.228447	1110.66351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.595	1	44.287	43.787	44.787	-0.30759								0	0	0	0.8837	1	16675	16675		0.40072	0	1		+		16322	16200	10034	10087	15667	15667					0.1126071298210718
KGPVVTAL	8	Unmodified	_KGPVVTAL_					0	0	0			REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	MSMS	HCT116MG_D190212_S4	4	392.74859619140625	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.676	1	53.347	52.847	53.847	-0.32923								0	0	0	0.8837	1	20047	20047		0.69038	0	1		+		16323	12891	10035	10088	15668	15668					0.0850360521968696
KGQEAKNPP	9	Unmodified	_KGQEAKNPP_					0	0	0		nc|ENSG00000260220|A0A096LP49-2|CCDC187;nc|ENSG00000260220|A0A096LP49|CCDC187;ENSG00000260220|ENST00000638797|CCDC187	nc|ENSG00000260220|A0A096LP49-2|CCDC187	nc|ENSG00000260220|A0A096LP49-2|CCDC187	MSMS	HCT116MG_D190212_S3	3	484.761962890625	2	484.761623	967.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.924	1	22.906	22.406	23.406	-0.018869								0	0	0	0.64498	1	8068	8068		21.747	1.293	1				16324	6623	10036	10089	15669	15669					0.023639992663675002
KGQELPLISLP	11	Unmodified	_KGQELPLISLP_					0	0	0			REV__ENSG00000170953|ENST00000306842|OR8B12	REV__ENSG00000170953|ENST00000306842|OR8B12	MSMS	HCT116MG_D190212_S2	2	597.8590698242188	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.422	1	35.279	34.779	35.779	-0.14245								0	0	0	0.95196	1	13212	13212		5.2969	0	1		+		16325	13326	10037	10090	15670	15670					0.11287116262769814
KGRGRAIA	8	Unmodified	_KGRGRAIA_					0	0	0			REV__ENSG00000117318|ENST00000374561|ID3	REV__ENSG00000117318|ENST00000374561|ID3	MSMS	HCT116MG_D190212_S1	1	414.7607116699219	2	414.761761	827.508969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.833	1	48.833	48.333	49.333	0								0	0	0	0.8837	1	18593	18593		0	0	1		+		16326	11611	10038	10091	15671	15671					0.08831463776868986
KGRGRAIA	8	Unmodified	_KGRGRAIA_					0	0	0			REV__ENSG00000117318|ENST00000374561|ID3	REV__ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	HCT116MG_D190212_S3	3	828.5171508789062	1	828.516245	827.508969	1.1583	0.00095965	-0.1341	-0.00011111	1.0242	0.00084854	828.5159809471342	48.638	1.722	48.322	47.932	49.654	-0.31596					87	32	4	0	0	0	0.88026	1	18443	18443		0	0	1	760690000	+		16327	11611	10038	10091	15672	15672					0.08831463776868986
KGRLIVLNAI	10	Unmodified	_KGRLIVLNAI_					0	0	0			REV__nc|ENSG00000108423|Q9UJT1-3|TUBD1	REV__nc|ENSG00000108423|Q9UJT1-3|TUBD1	MSMS	HCT116MG_D190212_S2	2	548.7678833007812	2	548.863683	1095.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.117	1	27.787	27.287	28.287	-0.32987								0	0	0	0.95507	1	10243	10243		3.5965	0	1		+		16328	11345	10039	10092	15673	15673					0.16878563427690096
KGRQLPRRRRR	11	Unmodified	_KGRQLPRRRRR_					0	0	0			REV__ENSG00000186790|ENST00000335071|FOXE3	REV__ENSG00000186790|ENST00000335071|FOXE3	MULTI-MSMS	HCT116MG_D190212_S1	1	493.9850158691406	3	493.650297	1477.92906	0.33912	0.00016741	0.06684	3.2996E-05	0.40596	0.0002004	493.65026016018754	56.505	0.568	56.505	56.273	56.841	0					32	10	4	0	0	0	0.74191	1	21811	21811		0.094841	0.094841	1	96957000	+		16329	13898	10040	10093	15674	15674					0.2092155710474799
KGRQLPRRRRR	11	Unmodified	_KGRQLPRRRRR_					0	0	0			REV__ENSG00000186790|ENST00000335071|FOXE3	REV__ENSG00000186790|ENST00000335071|FOXE3	MULTI-MATCH	HCT116MG_D190212_S3	3		3	493.650297	1477.92906	0.37126	0.00018327	0.39197	0.0001935	0.76323	0.00037677	493.6501901389862	56.774	0.26105	56.49	56.307	56.568	-0.28367	-0.0024089	0.00052035	NaN	0.094841	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1779400	+		16330	13898	10040	10093							0.2092155710474799
KGSARGCG	8	Unmodified	_KGSARGCG_					0	0	0		HDGF|p.F50Sfs*105|7|0.29|ENSG00000143321|chr1:156745312-156745312|A/-|frameshift_variant	HDGF|p.F50Sfs*105|7|0.29|ENSG00000143321|chr1:156745312-156745312|A/-|frameshift_variant	HDGF|p.F50Sfs*105|7|0.29|ENSG00000143321|chr1:156745312-156745312|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	735.357177734375	1	735.356633	734.349357	0.99655	0.00073282	-0.64079	-0.00047121	0.35576	0.00026161	735.3560175824615	50.859	0.30991	50.68	50.552	50.862	-0.17868					6	5	2	0	0	0	0.86858	1	19535	19535		2.0598	0	1	13249000			16331	9208	10041	10094	15675	15675					-0.02844412562603793
KGSLTIQQV	9	Unmodified	_KGSLTIQQV_					0	0	0		LIG4|p.K169Rfs*7|1|0.11|ENSG00000174405|chr13:108210763-108210763|T/-|frameshift_variant;LIG4|p.L462Ffs*12|1|0.14|ENSG00000174405|chr13:108209883-108209884|-/A|frameshift_variant;ENSG00000174405|ENST00000442234|LIG4	LIG4|p.K169Rfs*7|1|0.11|ENSG00000174405|chr13:108210763-108210763|T/-|frameshift_variant	LIG4|p.K169Rfs*7|1|0.11|ENSG00000174405|chr13:108210763-108210763|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	487.2872314453125	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.536	1	28.536	28.036	29.036	0								0	0	0	0.49326	1	10397	10397		29.082	2.8134	1				16332	5328	10042	10095	15676	15676					0.07301742960282809
KGSPDCVNELL	11	Unmodified	_KGSPDCVNELL_					0	0	0			REV__nc|ENSG00000198554|O75717-2|WDHD1	REV__nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MSMS	HCT116MG_D190212_S1	1	587.7926635742188	2	587.792263	1173.56997	0.50988	0.0002997	0.85867	0.00050472	1.3685	0.00080442	587.7924645122134	18.74	0.20848	18.74	18.61	18.819	0					5	3	2	0	0	0	0.73844	1	6468	6468		7.609	0	1	2346500	+		16333	14131	10043	10096	15677	15677					-0.009868568165074976
KGTRDEKIPQ	10	Unmodified	_KGTRDEKIPQ_					0	0	0			REV__SYCP2L|p.K267Vfs*17|1|0.09|ENSG00000153157|chr6:10907662-10907663|-/AG|frameshift_variant	REV__SYCP2L|p.K267Vfs*17|1|0.09|ENSG00000153157|chr6:10907662-10907663|-/AG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	587.1478881835938	2	586.325119	1170.63569	0.63222	0.00037069	-0.39032	-0.00022885	0.2419	0.00014183	586.3248113111011	24.025	0.26115	24.025	23.889	24.15	0					9	4	3	0	0	0	0.87037	1	8533	8533		6.2058	0	1	11891000	+		16334	12645	10044	10097	15678	15678					0.057193004207192644
KGVSLDVMNN	10	Unmodified	_KGVSLDVMNN_					0	0	0			REV__ENST00000591903.1_2_17:26976053-26976209:-|nuORF	REV__ENST00000591903.1_2_17:26976053-26976209:-|nuORF	MSMS	HCT116MG_D190212_S4	4	538.7723388671875	2	538.773874	1075.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.293	1	32.91	32.41	33.41	-0.38223								0	0	0	0.83884	1	12119	12119		23.79	10.747	1		+		16335	16695	10045	10098	15679	15679					-0.001551086423887682
KGVYAKYWIYV	11	Unmodified	_KGVYAKYWIYV_					0	0	0		PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant;PIEZO1|p.A2395Pfs*117|1|0.37|ENSG00000103335|chr16:88716061-88716067|CCCCGCA/-|frameshift_variant;ENSG00000103335|ENST00000301015|PIEZO1	PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	695.3826293945312	2	695.381906	1388.74926	0.7528	0.00052349	1.1323	0.00078739	1.8851	0.0013109	695.3825688884494	27.618	0.20648	27.618	27.49	27.696	0					5	3	2	0	0	0	0.7259	1	10057	10057		12.241	0	1	9538400			16336	1890	10046	10099	15680	15680					0.07043395533719377
KGWFLSLAP	9	Unmodified	_KGWFLSLAP_					0	0	0			REV__ENST00000256257.1_1_8:33405924-33406137:-|nuORF	REV__ENST00000256257.1_1_8:33405924-33406137:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.2879638671875	2	509.789653	1017.56475	0.4984	0.00025408	-0.91542	-0.00046667	-0.41702	-0.00021259	509.7893586035248	24.333	0.15627	23.953	23.874	24.03	-0.38003					4	2	2	0	0	0	0.24622	1	8743	8743		3.9444	0.3479	1	6394300	+		16337	14609	10047	10100	15681	15681					0.05667252173839188
KGWLSIDGL	9	Unmodified	_KGWLSIDGL_					0	0	0		PLCL2|p.F405L|1|0.39|ENSG00000154822|chr3:17010559-17010559|T/C|missense_variant	PLCL2|p.F405L|1|0.39|ENSG00000154822|chr3:17010559-17010559|T/C|missense_variant	PLCL2|p.F405L|1|0.39|ENSG00000154822|chr3:17010559-17010559|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7568359375	2	494.776742	987.538931	0.28781	0.0001424	-2.7977	-0.0013842	-2.5099	-0.0012418	494.77554824016187	21.164	0.15601	20.781	20.703	20.859	-0.38288					4	2	2	0	0	0	0.43775	1	7406	7406		20.454	5.6154	1	5446100			16338	9754	10048	10101	15682	15682					0.0446635793156247
KGWSKRGP	8	Unmodified	_KGWSKRGP_					0	0	0			REV__EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	REV__EED|p.H305Qfs*14|1|0.09|ENSG00000074266|chr11:86268500-86268501|-/AGACATAC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	458.26373291015625	2	458.261594	914.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.469	1	25.469	24.969	25.969	0								0	0	0	0.8837	1	9163	9163		12.532	1.7076	1		+		16339	10437	10049	10102	15683	15683					0.04796044057036397
KGYLNKLTRF	10	Unmodified	_KGYLNKLTRF_					0	0	0			REV__nc|ENSG00000159082|O43426-5|SYNJ1	REV__nc|ENSG00000159082|O43426-5|SYNJ1	MSMS	HCT116MG_D190212_S2	2	620.2481079101562	2	620.364047	1238.71354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.629	1	28.299	27.799	28.799	-0.32987								0	0	0	0.95351	1	10451	10451		3.9444	0	1		+		16340	12794	10050	10103	15684	15684					0.10373358076731165
KHAVARKLR	9	Unmodified	_KHAVARKLR_					0	0	0			REV__RASGRP1|p.S661Y|1|0.31|ENSG00000172575|chr15:38494659-38494659|G/T|missense_variant	REV__RASGRP1|p.S661Y|1|0.31|ENSG00000172575|chr15:38494659-38494659|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	360.23779296875	3	360.23672	1077.68833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.25	1	62.001	61.501	62.501	-0.24919								0	0	0	0.77019	1	23503	23503		0.23584	0	1		+		16341	13395	10051	10104	15685	15685					0.15259348064819278
KHGPTQPQ	8	Unmodified	_KHGPTQPQ_					0	0	0			REV__ENST00000330943.8_1_16:50707058-50707262:-|nuORF	REV__ENST00000330943.8_1_16:50707058-50707262:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	446.73516845703125	2	446.735409	891.456264	-0.10899	-4.869E-05	0.23083	0.00010312	0.12184	5.4431E-05	446.73538834554284	18.428	0.88682	18.065	17.434	18.321	-0.36325					37	16	3	0	0	0	0.80542	1	6424	6424		10.824	1.4408	1	50525000	+		16342	14927	10052	10105	15686	15686					0.006194609234285053
KHHRRKRRFRL	11	Unmodified	_KHHRRKRRFRL_					0	0	0			REV__ENSG00000145888|ENST00000274576|GLRA1	REV__ENSG00000145888|ENST00000274576|GLRA1	MSMS	HCT116MG_D190212_S1	1	795.5811157226562	2	795.49545	1588.97635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.505	1	38.505	38.005	39.005	0								0	0	0	0.96149	1	14418	14418		0.30703	0.30703	1		+		16343	12466	10053	10106	15687	15687					0.20541836375741696
KHIITLGQV	9	Unmodified	_KHIITLGQV_					0	0	0		nc|ENSG00000168404|Q8NB16-2|MLKL;ENSG00000168404|ENST00000308807|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	MULTI-MSMS	HCT116MG_D190212_S3	3	504.8131103515625	2	504.813659	1007.61277	0.32853	0.00016585	-1.094	-0.00055228	-0.76549	-0.00038643	504.8129549812773	15.449	0.26037	15.535	15.404	15.665	0.085423					7	4	2	0	0	0	0.67781	1	5080	5080		6.7232	2.3939	1	6123600			16344	5007	10054	10107	15688	15688					0.10926326093908756
KHIITLGQV	9	Unmodified	_KHIITLGQV_					0	0	0		nc|ENSG00000168404|Q8NB16-2|MLKL;ENSG00000168404|ENST00000308807|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	nc|ENSG00000168404|Q8NB16-2|MLKL	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	504.813659	1007.61277	-0.38021	-0.00019194	-0.48272	-0.00024368	-0.86293	-0.00043562	504.8133538078442	15.545	0.19837	15.383	15.263	15.461	-0.16173	-0.07561	0.0002995	NaN	6.7232	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	854730			16345	5007	10054	10107							0.10926326093908756
KHKCQTRRLR	10	Unmodified	_KHKCQTRRLR_					0	0	0		ENST00000434391.6_1_1:26797081-26797279:+|nuORF	ENST00000434391.6_1_1:26797081-26797279:+|nuORF	ENST00000434391.6_1_1:26797081-26797279:+|nuORF	MSMS	HCT116MG_D190212_S2	2	663.3890991210938	2	663.388397	1324.76224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.535	1	62.404	61.904	62.904	-0.13151								0	0	0	0.96937	1	24240	24240		0.40072	0	1				16346	7876	10055	10108	15689	15689					0.11284948164848174
KHKDSLLPSAP	11	Unmodified	_KHKDSLLPSAP_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-4|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-4|DOCK4	MSMS	HCT116MG_D190212_S3	3	596.8368530273438	2	596.837862	1191.66117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.117	1	45.805	45.305	46.305	-0.31237								0	0	0	0.94538	1	17286	17286		8.7454	2.0222	1		+		16347	15990	10056	10109	15690	15690					0.07300774943132637
KHKERARGP	9	Unmodified	_KHKERARGP_					0	0	0			REV__ENST00000460834.1_1_6:31555089-31556359:+|nuORF	REV__ENST00000460834.1_1_6:31555089-31556359:+|nuORF	MSMS	HCT116MG_D190212_S2	2	360.2127990722656	3	360.212463	1077.61556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.774	1	19.398	18.898	19.898	-0.37503								0	0	0	0.76875	1	6875	6875		5.2969	2.5617	1		+		16348	15775	10057	10110	15691	15691					0.0798559427141754
KHKRKHKSSKK	11	Unmodified	_KHKRKHKSSKK_					0	0	0			REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MSMS	HCT116MG_D190212_S3	3	696.4386596679688	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.982	1	59.727	59.227	60.227	-0.25422								0	0	0	0.95686	1	22856	22856		2.7352	0.23671	1		+		16349	13890	10058	10111	15692	15692					0.1835372313919379
KHKSGASP	8	Unmodified	_KHKSGASP_					0	0	0		ENST00000358127.8_1_9:36837440-36837668:-|nuORF	ENST00000358127.8_1_9:36837440-36837668:-|nuORF	ENST00000358127.8_1_9:36837440-36837668:-|nuORF	MSMS	HCT116MG_D190212_S2	2	406.2228698730469	2	406.224677	810.434801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.985	1	21.6	21.1	22.1	-0.38503								0	0	0	0.85589	1	7766	7766		18.135	1.0484	1				16350	7319	10059	10112	15693	15693					0.022000758947115173
KHLRKLVPLLL	11	Unmodified	_KHLRKLVPLLL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	665.4607543945312	2	665.458282	1328.90201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.174	1	58.004	57.504	58.504	-0.1703								0	0	0	0.96149	1	22476	22476		0.30703	0.03801	1				16351	741	10060	10113	15694	15694					0.2507163572101945
KHLSTHEAGSA	11	Unmodified	_KHLSTHEAGSA_					0	0	0		INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	569.2859497070312	2	569.285994	1136.55744	0.5252	0.00029899	-0.18147	-0.00010331	0.34373	0.00019568	569.28583646242	17.698	0.2604	17.698	17.568	17.828	0					9	4	3	0	0	0	0.46155	1	6051	6051		49.554	5.7819	1	20361000			16352	5003	10061	10114	15695	15695					-0.005381321645245407
KHLSTHEAGSA	11	Unmodified	_KHLSTHEAGSA_					0	0	0		INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	379.85980224609375	3	379.859755	1136.55744	0.059989	2.2787E-05	-0.42354	-0.00016088	-0.36355	-0.0001381	379.8597196078986	17.698	0.15635	17.698	17.62	17.776	0					4	2	2	0	0	0	0.7298	1	6067	6067		12.228	6.3594	1	3441000			16353	5003	10061	10114	15696	15696					-0.005381321645245407
KHLSTHEAGSA	11	Unmodified	_KHLSTHEAGSA_					0	0	0		INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.286376953125	2	569.285994	1136.55744	0.13855	7.8877E-05	0.20403	0.00011615	0.34258	0.00019503	569.2861053763672	18.293	0.46989	17.93	17.799	18.269	-0.36325					23	8	4	0	0	0	0.54124	1	6288	6288		41.956	0.11592	1	141190000			16354	5003	10061	10114	15697	15697					-0.005381321645245407
KHLSTHEAGSA	11	Unmodified	_KHLSTHEAGSA_					0	0	0		INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	379.85955810546875	3	379.859755	1136.55744	-0.42189	-0.00016026	0.13424	5.0994E-05	-0.28765	-0.00010927	379.859750727579	18.293	0.26144	17.93	17.799	18.061	-0.36325					7	4	2	0	0	0	0.60456	1	6301	6301		23.016	8.8449	1	14211000			16355	5003	10061	10114	15698	15698					-0.005381321645245407
KHLSTHEAGSA	11	Unmodified	_KHLSTHEAGSA_					0	0	0		INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	569.2859497070312	2	569.285994	1136.55744	0.22415	0.0001276	0.12072	6.8725E-05	0.34487	0.00019633	569.2859513711193	17.166	0.31221	17.251	17.12	17.433	0.084467					14	5	3	0	0	0	0.54124	1	5754	5754		41.956	3.78	1	17416000			16356	5003	10061	10114	15699	15699					-0.005381321645245407
KHLSTHEAGSA	11	Unmodified	_KHLSTHEAGSA_					0	0	0		INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	569.285994	1136.55744	0.5252	0.00029899	-0.18147	-0.00010331	0.34373	0.00019568	569.28583646242	17.698	0.2604	17.698	17.568	17.828	0	-0.11592	-0.0003568	NaN	49.554	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20361000			16357	5003	10061	10114							-0.005381321645245407
KHLSTHEAGSA	11	Unmodified	_KHLSTHEAGSA_					0	0	0		INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	569.285994	1136.55744	0.13855	7.8877E-05	0.20403	0.00011615	0.34258	0.00019503	569.2861053763672	18.293	0.46989	17.93	17.799	18.269	-0.36325	0.11592	8.2121E-05	NaN	49.554	23	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141190000			16358	5003	10061	10114							-0.005381321645245407
KHLSTHEAGSA	11	Unmodified	_KHLSTHEAGSA_					0	0	0		INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	569.285994	1136.55744	0.22415	0.0001276	0.12072	6.8725E-05	0.34487	0.00019633	569.2859513711193	17.166	0.31221	17.251	17.12	17.433	0.084467	-0.047137	8.085E-05	NaN	41.956	14	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17416000			16359	5003	10061	10114							-0.005381321645245407
KHLSTHEAGSA	11	Unmodified	_KHLSTHEAGSA_					0	0	0		INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant;INSM2|p.F535Lfs*6|3|0.26|ENSG00000168348|chr14:35535851-35535851|T/-|frameshift_variant;ENSG00000168348|ENST00000307169|INSM2	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	INSM2|p.S536*|3|0.3|ENSG00000168348|chr14:35535850-35535851|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	569.285994	1136.55744	0.21671	0.00012337	-0.26572	-0.00015127	-0.04901	-2.7901E-05	569.2858119055438	17.515	0.31151	17.345	17.225	17.536	-0.17047	0.047137	-0.00035914	NaN	41.956	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2773400			16360	5003	10061	10114							-0.005381321645245407
KHNLKRETL	9	Unmodified	_KHNLKRETL_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MSMS	HCT116MG_D190212_S4	4	380.2272644042969	3	380.22789	1137.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.15	1	40.772	40.272	41.272	-0.37732								0	0	0	0.76954	1	15123	15123		2.4985	0.21571	1				16361	1361	10062	10115	15700	15700					0.09851614382841944
KHPILKLKLAL	11	Unmodified	_KHPILKLKLAL_					0	0	0		ENST00000225831.4_1_17:32582309-32582372:+|nuORF	ENST00000225831.4_1_17:32582309-32582372:+|nuORF	ENST00000225831.4_1_17:32582309-32582372:+|nuORF	MSMS	HCT116MG_D190212_S2	2	637.437744140625	2	637.439558	1272.86456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.521	1	10.247	9.7471	10.747	-0.27365								0	0	0	0.96149	1	3333	3333		0.30703	0.30703	1				16362	6763	10063	10116	15701	15701					0.23904544455422183
KHPNKKIKT	9	Unmodified	_KHPNKKIKT_					0	0	0		ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENST00000508756.2_1_5:98204705-98207835:-|nuORF	MSMS	HCT116MG_D190212_S1	1	547.3462524414062	2	547.345658	1092.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.178	1	21.178	20.678	21.678	0								0	0	0	0.76823	1	7438	7438		3.5965	0	1				16363	8479	10064	10117	15702	15702					0.13413106250845885
KHQKEQKEQ	9	Unmodified	_KHQKEQKEQ_					0	0	0			REV__RAD50|p.N934Ifs*6|1|0.26|ENSG00000113522|chr5:132608690-132608690|A/-|frameshift_variant	REV__RAD50|p.N934Ifs*6|1|0.26|ENSG00000113522|chr5:132608690-132608690|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	395.00738525390625	3	394.879038	1181.61528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8653	1	9.6006	9.1006	10.101	-0.26472								0	0	0	0.76998	1	3097	3097		0.96228	0.18574	1		+		16364	11485	10065	10118	15703	15703					0.03174129760895994
KHRLFTTTE	9	Unmodified	_KHRLFTTTE_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	378.208984375	3	378.208495	1131.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.442	1	61.182	60.682	61.682	-0.2602								0	0	0	0.76967	1	23179	23179		1.0715	0.10919	1				16365	1619	10066	10119	15704	15704					0.043119327375507055
KHWDKYFRRRY	11	Unmodified	_KHWDKYFRRRY_					0	0	0			REV__RPL3L|p.C114Y|1|0.31|ENSG00000140986|chr16:1952898-1952898|C/T|missense_variant	REV__RPL3L|p.C114Y|1|0.31|ENSG00000140986|chr16:1952898-1952898|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	827.93701171875	2	827.939308	1653.86406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.092	1	44.014	43.514	44.514	-0.078373								0	0	0	0.96157	1	16737	16737		0.26902	0.26902	1		+		16366	17482	10067	10120	15705	15705					0.0632851778825625
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB;ENSG00000087586|ENST00000395915|AURKA	AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant	AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	511.76904296875	2	511.768917	1021.52328	0.48717	0.00024932	0.24461	0.00012518	0.73178	0.0003745	511.7687473515262	52.984	0.25622	52.984	52.845	53.102	0					11	4	3	0	0	0	0.034046	1	20298	20298		82.529	42.572	1	38415000			16367	235	10068	10121	15706	15706					0.013380714145228012
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB;ENSG00000087586|ENST00000395915|AURKA	AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant	AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	511.7689514160156	2	511.768917	1021.52328	0.12845	6.5737E-05	0.14791	7.5698E-05	0.27636	0.00014143	511.76889399927404	53.285	0.41214	53.096	52.913	53.326	-0.18922					22	7	4	0	0	0	0.016744	1	20473	20473		99.755	59.798	1	149340000			16368	235	10068	10121	15707	15707					0.013380714145228012
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB;ENSG00000087586|ENST00000395915|AURKA	AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant	AURKC|p.A266Pfs*4|1|0.3|ENSG00000105146|chr19:57235279-57235279|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1022.53125	1	1022.53056	1021.52328	0.54158	0.00055379	-0.58463	-0.00059781	-0.043051	-4.4021E-05	1022.530134514378	53.284	0.20648	53.095	52.966	53.172	-0.18922					6	3	2	0	0	0	0.014023	1	20497	20497		103.42	63.47	1	22963000			16369	235	10068	10121	15708	15708					0.013380714145228012
KIAKTVIM	8	Unmodified	_KIAKTVIM_					0	0	0			REV__tr|U7T089|U7T089_FUSNUIron-sulfurclustercarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00773PE=3SV=1	REV__tr|U7T089|U7T089_FUSNUIron-sulfurclustercarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00773PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	903.569091796875	1	903.569586	902.562309	0.65937	0.00059579	-1.0787	-0.0009747	-0.41935	-0.00037891	903.5686244993582	60.801	1.4956	60.801	60.181	61.676	0					42	28	2	0	0	0	0.85329	1	23545	23545		4.756	0	1	20966000	+		16370	17891	10069	10122	15709	15709					0.10713080444531897
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	HCT116MG_D190212_S1	1	491.2898254394531	2	491.290017	980.565481	0.35304	0.00017344	-0.10034	-4.9295E-05	0.2527	0.00012415	491.28988705771286	33.732	0.52043	33.732	33.504	34.024	0					23	9	3	0	0	0	0.0043772	1	12480	12480		145.13	52.638	1	27697000			16371	1882;1899	10070	10123	15710	15710					0.07442046822893644
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	HCT116MG_D190212_S2	2	491.2902526855469	2	491.290017	980.565481	0.25919	0.00012734	0.064434	3.1656E-05	0.32363	0.00015899	491.28995508643726	33.961	0.36372	33.786	33.552	33.916	-0.17512					17	6	4	0	0	0	0.11023	1	12590	12590		56.177	18.203	1	77608000			16372	1882;1899	10070	10123	15711	15711					0.07442046822893644
KIDDKPVKI	9	Unmodified	_KIDDKPVKI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000527290.1_1_11:74660330-74676171:+|nuORF;ENST00000526361.1_1_11:74660330-74680708:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MSMS	HCT116MG_D190212_S1	1	528.32666015625	2	528.326599	1054.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.507	1	25.507	25.007	26.007	0								0	0	0	0.023535	1	9178	9178		94.909	51.136	1				16373	2606	10071	10124	15712	15712					0.11351175545519254
KIDDKPVKI	9	Unmodified	_KIDDKPVKI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000527290.1_1_11:74660330-74676171:+|nuORF;ENST00000526361.1_1_11:74660330-74680708:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MSMS	HCT116MG_D190212_S1	1	352.5534362792969	3	352.553492	1054.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.555	1	25.555	25.055	26.055	0								0	0	0	0.76638	1	9197	9197		13.615	2.8154	1				16374	2606	10071	10124	15713	15713					0.11351175545519254
KIDDKPVKI	9	Unmodified	_KIDDKPVKI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000527290.1_1_11:74660330-74676171:+|nuORF;ENST00000526361.1_1_11:74660330-74680708:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S2	2	528.3267211914062	2	528.326599	1054.63865	0.55734	0.00029446	-0.16361	-8.6438E-05	0.39374	0.00020802	528.3263343532609	25.938	0.25987	25.569	25.394	25.654	-0.36914					9	4	3	0	0	0	0.0035391	1	9370	9370		171.46	107.5	1	20786000			16375	2606	10071	10124	15714	15714					0.11351175545519254
KIDDKPVKI	9	Unmodified	_KIDDKPVKI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000527290.1_1_11:74660330-74676171:+|nuORF;ENST00000526361.1_1_11:74660330-74680708:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S2	2	352.55328369140625	3	352.553492	1054.63865	0.003938	1.3884E-06	0.21668	7.6391E-05	0.22062	7.778E-05	352.5534285629421	25.929	0.25987	25.56	25.394	25.654	-0.36914					10	4	3	0	0	0	0.15109	1	9382	9382		48.073	5.7603	1	15693000			16376	2606	10071	10124	15715	15715					0.11351175545519254
KIDEKNFVV	9	Unmodified	_KIDEKNFVV_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MSMS	HCT116MG_D190212_S1	1	546.3093872070312	2	546.308406	1090.60226	0.44541	0.00024333	1.0552	0.00057644	1.5006	0.00081977	546.309411061893	36.429	0.37239	36.429	36.202	36.574	0					9	6	2	0	0	0	0.1935	1	13594	13594		41.956	14.327	1	12894000			16377	2631	10072	10125	15716	15716					0.06058298648804339
KIDEKNFVV	9	Unmodified	_KIDEKNFVV_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MSMS	HCT116MG_D190212_S2	2	546.3086547851562	2	546.308406	1090.60226	0.60211	0.00032894	-0.11438	-6.2489E-05	0.48772	0.00026645	546.308301948835	36.48	0.25962	36.352	36.174	36.434	-0.12799					10	4	3	0	0	0	0.040027	1	13650	13650		79.596	45.195	1	35449000			16378	2631	10072	10125	15717	15717					0.06058298648804339
KIDEKTAEL	9	Unmodified	_KIDEKTAEL_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;NUF2|p.Y445N|1|0.1|ENSG00000143228|chr1:163355407-163355407|T/A|missense_variant	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	HCT116MG_D190212_S1	1	524.2902221679688	2	523.790047	1045.56554	0.50199	0.00026294	-0.16588	-8.6888E-05	0.33611	0.00017605	523.7900442740814	26.006	0.3135	26.006	25.77	26.084	0					11	5	3	0	0	0	0.0034268	2	9364	9364;9383		179.28	57.104	1	15849000			16379	3793	10073	10126	15718;15719	15718					0.04458002032242803
KIDEKTAEL	9	Unmodified	_KIDEKTAEL_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;NUF2|p.Y445N|1|0.1|ENSG00000143228|chr1:163355407-163355407|T/A|missense_variant	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	HCT116MG_D190212_S2	2	523.7899780273438	2	523.790047	1045.56554	0.35656	0.00018676	0.16088	8.4268E-05	0.51745	0.00027103	523.7900756981281	26.411	0.41413	26.05	25.87	26.284	-0.36164					13	7	3	0	0	0	0.0039465	1	9562	9562		151.48	40.805	1	85746000			16380	3793	10073	10126	15720	15720					0.04458002032242803
KIDEKTAEL	9	Unmodified	_KIDEKTAEL_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;NUF2|p.Y445N|1|0.1|ENSG00000143228|chr1:163355407-163355407|T/A|missense_variant	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	HCT116MG_D190212_S3	3	523.7901611328125	2	523.790047	1045.56554	0.47738	0.00025005	-0.36713	-0.0001923	0.11025	5.7746E-05	523.7900273605627	26.117	0.20869	25.989	25.859	26.068	-0.12795					8	3	3	0	0	0	0.16143	1	9375	9375		46.022	12.577	1	5192500			16381	3793	10073	10126	15721	15721					0.04458002032242803
KIDENQLMY	9	Unmodified	_KIDENQLMY_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MSMS	HCT116MG_D190212_S2	2	577.2821044921875	2	577.281531	1152.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.479	1	38.392	37.892	38.892	-0.086819								0	0	0	0.16977	1	14457	14457		49.554	19.329	1				16382	2362	10074	10127	15722	15722					-0.021662418452024212
KIDKEIEL	8	Unmodified	_KIDKEIEL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;ENST00000514306.1_1_5:57754443-57755636:-|nuORF;ENST00000515415.5_1_5:57754112-57754961:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2901916503906	2	494.289682	986.564812	0.52206	0.00025805	-0.085276	-4.2151E-05	0.43679	0.0002159	494.28958362038213	34.686	0.25866	34.528	34.399	34.657	-0.15834					7	4	2	0	0	0	0.033255	1	12921	12921		142.08	0	1	50107000			16383	3917	10075	10128	15723	15723					0.07099207383191697
KIEHKIKKKKV	11	Unmodified	_KIEHKIKKKKV_					0	0	0			REV__CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant	REV__CSNK2A3|p.R80H|1|0.2|ENSG00000254598|chr11:11352881-11352881|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	460.3128356933594	3	460.313406	1377.91839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.983	1	24.608	24.108	25.108	-0.37521								0	0	0	0.96192	1	8977	8977		0.08335	0	1		+		16384	10301	10076	10129	15724	15724					0.2445471688708949
KIEKEKKEHTK	11	Unmodified	_KIEKEKKEHTK_					0	0	0		ASAP2|p.A168T|1|0.14|ENSG00000151693|chr2:9323152-9323152|G/A|missense_variant	ASAP2|p.A168T|1|0.14|ENSG00000151693|chr2:9323152-9323152|G/A|missense_variant	ASAP2|p.A168T|1|0.14|ENSG00000151693|chr2:9323152-9323152|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	466.9430236816406	3	466.608548	1396.80381	0.1653	7.7129E-05	-0.55291	-0.00025799	-0.38761	-0.00018086	466.6082582234619	51.896	0.62684	51.896	51.549	52.176	0					25	11	3	0	0	0	0.74191	1	19802	19802		1.2148	0	1	35728000			16385	196	10077	10130	15725	15725					0.12128362614475918
KIEKQTRHRVF	11	Unmodified	_KIEKQTRHRVF_					0	0	0			REV__nc|ENSG00000226085|P0C7P4|UQCRFS1P1	REV__nc|ENSG00000226085|P0C7P4|UQCRFS1P1	MULTI-MSMS	HCT116MG_D190212_S1	1	721.421875	2	721.422959	1440.83137	0.74749	0.00053926	-1.5431	-0.0011132	-0.79559	-0.00057395	721.4218645705596	51.995	0.26378	51.995	51.861	52.125	0					7	4	2	0	0	0	0.74191	1	19906	19906		2.4985	1.0166	1	19231000	+		16386	17296	10078	10131	15726	15726					0.12858310665387762
KIELIKIKYKK	11	Unmodified	_KIELIKIKYKK_					0	0	0			REV__tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	REV__tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	702.4703369140625	2	702.471055	1402.92756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.563	1	59.305	58.805	59.805	-0.25832								0	0	0	0.96157	1	22686	22686		0.26902	0.26902	1		+		16387	17801	10079	10132	15727	15727					0.24221065452775292
KIEPVLVP	8	Unmodified	_KIEPVLVP_					0	0	0			REV__ENST00000469699.1_1_11:47350138-47350698:+|nuORF	REV__ENST00000469699.1_1_11:47350138-47350698:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	447.78619384765625	2	447.786579	893.558604	0.0047934	2.1464E-06	-0.15668	-7.0158E-05	-0.15188	-6.8012E-05	447.78644903379535	57.407	0.46719	57.407	57.204	57.671	0					12	8	2	0	0	0	0.8672	1	22108	22108		2.3027	0	1	11500000	+		16388	15858	10080	10133	15728	15728					0.10756733942321262
KIEQEPLSV	9	Unmodified	_KIEQEPLSV_					0	0	0			REV__ENST00000488484.1_1_22:20105172-20110015:+|nuORF	REV__ENST00000488484.1_1_22:20105172-20110015:+|nuORF	MSMS	HCT116MG_D190212_S3	3	521.8338623046875	2	521.792589	1041.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.921	1	37.62	37.12	38.12	-0.30137								0	0	0	0.76718	1	14031	14031		10.824	0.75	1		+		16389	11049	10081	10134	15729	15729					0.05150305894835583
KIERMAIKKV	10	Unmodified	_KIERMAIKKV_					0	0	0			REV__CDKL2|p.G369Afs*20|1|0.35|ENSG00000138769|chr4:75597153-75597153|T/-|frameshift_variant	REV__CDKL2|p.G369Afs*20|1|0.35|ENSG00000138769|chr4:75597153-75597153|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	608.385498046875	2	608.383926	1214.7533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.179	1	44.87	44.37	45.37	-0.30927								0	0	0	0.95648	1	16908	16908		3.2813	0.54611	1		+		16390	10143	10082	10135	15730	15730					0.15451161755800058
KIFDEENIL	9	Unmodified	_KIFDEENIL_					0	0	0		HCN1|p.M512Nfs*17|1|0.37|ENSG00000164588|chr5:45303682-45303683|-/T|frameshift_variant;ENSG00000164588|ENST00000303230|HCN1	HCN1|p.M512Nfs*17|1|0.37|ENSG00000164588|chr5:45303682-45303683|-/T|frameshift_variant	HCN1|p.M512Nfs*17|1|0.37|ENSG00000164588|chr5:45303682-45303683|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	374.2021179199219	3	374.201007	1119.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.68	1	25.68	25.18	26.18	0								0	0	0	0.7689	1	9248	9248		2.7352	0	1				16391	4705	10083	10136	15731	15731					0.02618288549274439
KIFEMGPVFTL	11	Unmodified	_KIFEMGPVFTL_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	HCT116MG_D190212_S1	1	641.3497314453125	2	641.349217	1280.68388	0.64725	0.00041511	0.079713	5.1124E-05	0.72696	0.00046624	641.3492459375224	57.23	0.20772	57.23	57.152	57.36	0					11	3	4	0	0	0	0.0040483	1	22040	22040		143.21	95.465	1	110720000			16392	6255	10084	10137	15732	15732					0.054766580163914114
KIFEMGPVFTL	11	Unmodified	_KIFEMGPVFTL_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	HCT116MG_D190212_S2	2	641.349609375	2	641.349217	1280.68388	0.63255	0.00040568	0.056756	3.6401E-05	0.6893	0.00044208	641.3492379956197	57.464	0.20807	57.289	57.159	57.367	-0.17494					8	3	3	0	0	0	0.31179	1	22213	22213		62.869	22.919	1	87094000			16393	6255	10084	10137	15733	15733					0.054766580163914114
KIFKLVLIQVS	11	Unmodified	_KIFKLVLIQVS_					0	0	0			REV__tr|U7T3D8|U7T3D8_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00392PE=3SV=1	REV__tr|U7T3D8|U7T3D8_FUSNURelEproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00392PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	429.9505920410156	3	429.951475	1286.83259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.323	1	63.2	62.7	63.7	-0.12264								0	0	0	0.96194	1	24548	24548		0.073264	0	1		+		16394	17942	10085	10138	15734	15734					0.20065131981596096
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1	nc|ENSG00000178053|P58340-5|MLF1	nc|ENSG00000178053|P58340-5|MLF1	MSMS	HCT116MG_D190212_S1	1	491.7821350097656	2	491.782025	981.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.164	1	25.164	24.664	25.664	0								0	0	0	0.00085315	1	9040	9040		128.57	70.851	1				16395	5484	10086	10139	15735	15735					0.05798340585988626
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1	nc|ENSG00000178053|P58340-5|MLF1	nc|ENSG00000178053|P58340-5|MLF1	MULTI-MSMS	HCT116MG_D190212_S2	2	491.7820739746094	2	491.782025	981.549496	0.24127	0.00011865	-0.021634	-1.0639E-05	0.21964	0.00010801	491.78198411699054	25.53	0.98659	25.161	25.03	26.017	-0.36914					26	18	2	0	0	0	0.0034297	2	9223	9171;9223		159.1	76.572	1	31006000			16396	5484	10086	10139	15736;15737	15737					0.05798340585988626
KIGEGTYGV	9	Unmodified	_KIGEGTYGV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1;nc|ENSG00000123374|P24941-2|CDK2;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENSG00000123374|ENST00000266970|CDK2;ENSG00000250506|ENST00000448471|CDK3	ENSG00000170312|ENST00000395284|CDK1;ENSG00000250506|ENST00000448471|CDK3	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	HCT116MG_D190212_S1	1	923.4854736328125	1	923.483273	922.475997	0.97072	0.00089644	-0.010777	-9.9528E-06	0.95994	0.00088649	923.4839964489569	31.674	0.20851	31.674	31.544	31.753	0					5	3	2	0	0	0	0.045679	1	11689	11689		76.825	38.851	1	5312400			16397	5121;6580	10087	10140	15738	15738					0.011657921435244134
KIGEGTYGV	9	Unmodified	_KIGEGTYGV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1;nc|ENSG00000123374|P24941-2|CDK2;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENSG00000123374|ENST00000266970|CDK2;ENSG00000250506|ENST00000448471|CDK3	ENSG00000170312|ENST00000395284|CDK1;ENSG00000250506|ENST00000448471|CDK3	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	HCT116MG_D190212_S2	2	462.245361328125	2	462.245275	922.475997	0.34868	0.00016118	0.20183	9.3293E-05	0.55051	0.00025447	462.24532338981993	31.944	0.41357	31.714	31.529	31.942	-0.23009					13	7	3	0	0	0	0.090581	1	11801	11801		60.074	11.728	1	38261000			16398	5121;6580	10087	10140	15739	15739					0.011657921435244134
KIGEGTYGV	9	Unmodified	_KIGEGTYGV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1;nc|ENSG00000123374|P24941-2|CDK2;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENSG00000123374|ENST00000266970|CDK2;ENSG00000250506|ENST00000448471|CDK3	ENSG00000170312|ENST00000395284|CDK1;ENSG00000250506|ENST00000448471|CDK3	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	HCT116MG_D190212_S2	2	923.4833374023438	1	923.483273	922.475997	1.0734	0.0009913	-0.20963	-0.00019359	0.8638	0.00079771	923.4832098135078	31.928	0.25766	31.693	31.525	31.782	-0.23431					7	4	2	0	0	0	0.053544	1	11818	11818		72.968	33.011	1	11338000			16399	5121;6580	10087	10140	15740	15740					0.011657921435244134
KIGEGTYGV	9	Unmodified	_KIGEGTYGV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1;nc|ENSG00000123374|P24941-2|CDK2;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENSG00000123374|ENST00000266970|CDK2;ENSG00000250506|ENST00000448471|CDK3	ENSG00000170312|ENST00000395284|CDK1;ENSG00000250506|ENST00000448471|CDK3	ENSG00000170312|ENST00000395284|CDK1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	462.245275	922.475997	0.19135	8.8449E-05	0.02203	1.0183E-05	0.21338	9.8633E-05	462.2452045789578	31.674	0.41704	31.674	31.492	31.909	0	-0.019744	-0.00011727	NaN	60.074	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26996000			16400	5121;6580	10087	10140							0.011657921435244134
KIGQRGRA	8	Unmodified	_KIGQRGRA_					0	0	0		tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	443.272705078125	2	443.272493	884.530432	0.091249	4.0448E-05	-0.0061074	-2.7072E-06	0.085142	3.7741E-05	443.27243920487626	45.374	0.62648	45.374	45.244	45.87	0					27	11	4	0	0	0	0.85329	1	17191	17191		4.756	0.42677	1	164660000			16401	18403	10088	10141	15741	15741					0.08354848805606707
KIGQRGRA	8	Unmodified	_KIGQRGRA_					0	0	0		tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	443.27239990234375	2	443.272493	884.530432	-0.10331	-4.5795E-05	-0.019336	-8.5711E-06	-0.12265	-5.4366E-05	443.27244004539546	49.533	0.71297	49.369	49.127	49.84	-0.16369					18	13	2	0	0	0	0.74206	1	18979	18979		18.135	5.6034	1	34424000			16402	18403	10088	10141	15742	15742					0.08354848805606707
KIGQRGRA	8	Unmodified	_KIGQRGRA_					0	0	0		tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	443.272493	884.530432	-0.0057335	-2.5415E-06	0.30857	0.00013678	0.30284	0.00013424	443.2725257711751	49.209	0.98026	49.209	48.408	49.389	0	-0.080166	0.00010317	NaN	18.135	34	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93371000			16403	18403	10088	10141							0.08354848805606707
KIGQRGRA	8	Unmodified	_KIGQRGRA_					0	0	0		tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	tr|U7SRK9|U7SRK9_FUSNUsuccinyl-diaminopimelatedesuccinylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01558PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	443.272493	884.530432	0.1638	7.261E-05	-0.10235	-4.5369E-05	0.061453	2.724E-05	443.27243477698715	45.803	0.51282	45.701	45.556	46.068	-0.10139	0.16376	-5.9248E-05	NaN	4.756	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32961000			16404	18403	10088	10141							0.08354848805606707
KIIDEDGLLNL	11	Unmodified	_KIIDEDGLLNL_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1;RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	HCT116MG_D190212_S2	2	621.8508911132812	2	621.850635	1241.68672	0.48761	0.00030322	0.10832	6.7356E-05	0.59592	0.00037058	621.8506624312097	54.416	0.25563	54.227	54.048	54.303	-0.1894					11	4	4	0	0	0	0.037746	1	20955	20955		117.84	41.013	1	79490000			16405	985	10089	10142	15743	15743					0.07554204674920584
KIIDEDGLLNL	11	Unmodified	_KIIDEDGLLNL_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1;RFC1|p.N510Mfs*33|1|0.15|ENSG00000035928|chr4:39308992-39308992|T/-|frameshift_variant	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	621.850635	1241.68672	0.72309	0.00044966	-0.17259	-0.00010732	0.5505	0.00034233	622.3521277260947	54.153	0.20536	54.153	54.026	54.231	0	-0.036551	-0.00028369	NaN	117.84	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27882000			16406	985	10089	10142							0.07554204674920584
KIIDFIYTA	9	Unmodified	_KIIDFIYTA_					0	0	0		KLHL9|p.S116Ffs*3|1|0.32|ENSG00000198642|chr9:21334513-21334514|-/A|frameshift_variant;KLHL9|p.F144Lfs*23|1|0.4|ENSG00000198642|chr9:21334425-21334428|AAGA/-|frameshift_variant;KLHL13|p.Y595Ifs*9|1|0.07|ENSG00000003096|chrX:117899094-117899094|C/-|frameshift_variant;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	KLHL9|p.S116Ffs*3|1|0.32|ENSG00000198642|chr9:21334513-21334514|-/A|frameshift_variant	KLHL9|p.S116Ffs*3|1|0.32|ENSG00000198642|chr9:21334513-21334514|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	542.308837890625	2	542.307875	1082.6012	0.57358	0.00031106	0.251	0.00013612	0.82458	0.00044718	542.3080841048605	52.646	0.20793	52.459	52.347	52.555	-0.18725					5	3	2	0	0	0	0.071914	1	20246	20246		63.961	9.187	1	8398000			16407	792	10090	10143	15744	15744					0.06320084279923321
KIIDIQEKV	9	Unmodified	_KIIDIQEKV_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S1	1	543.33203125	2	543.331882	1084.64921	0.5608	0.0003047	-0.21727	-0.00011805	0.34353	0.00018665	543.3316561125698	34.415	0.26047	34.415	34.233	34.493	0					10	4	3	0	0	0	3.0218E-08	1	12771	12771		228.37	90.945	1	19576000			16408	1027;18285	10091	10144	15745	15745					0.11027158199931364
KIIDIQEKV	9	Unmodified	_KIIDIQEKV_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	543.332275390625	2	543.331882	1084.64921	0.75285	0.00040905	-0.15692	-8.5262E-05	0.59592	0.00032378	543.3318401695553	34.485	0.25774	34.31	34.175	34.433	-0.17512					10	4	3	0	0	0	9.4614E-05	1	12852	12852		200.32	64.458	1	58248000			16409	1027;18285	10091	10144	15746	15746					0.11027158199931364
KIIGIMEEV	9	Unmodified	_KIIGIMEEV_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	516.29345703125	2	516.293911	1030.57327	0.34871	0.00018004	-0.46639	-0.00024079	-0.11768	-6.0756E-05	516.2935900866274	49.294	0.20563	49.294	49.183	49.389	0					5	3	2	0	0	0	0.13316	1	18797	18797		51.63	7.7715	1	10960000			16410	2499	10092	10145	15747	15747					0.05920438028147146
KIIGIMEEV	9	Unmodified	_KIIGIMEEV_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2935180664062	2	516.293911	1030.57327	0.066277	3.4218E-05	0.3146	0.00016243	0.38088	0.00019665	516.293906332235	49.399	0.25323	49.245	49.086	49.339	-0.15406					7	4	2	0	0	0	0.12205	1	18911	18911		53.833	1.5644	1	50750000			16411	2499	10092	10145	15748	15748					0.05920438028147146
KIIIFRTLIL	10	Unmodified	_KIIIFRTLIL_					0	0	0		ENST00000310806.8_1_14:45673220-45673358:-|nuORF	ENST00000310806.8_1_14:45673220-45673358:-|nuORF	ENST00000310806.8_1_14:45673220-45673358:-|nuORF	MSMS	HCT116MG_D190212_S3	3	615.4195556640625	2	615.420834	1228.82712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.061	1	58.797	58.297	59.297	-0.26405								0	0	0	0.96521	1	22482	22482		1.3295	0.13619	1				16412	7056	10093	10146	15749	15749					0.2218545318978613
KIIYVLSTV	9	Unmodified	_KIIYVLSTV_					0	0	0			REV__ENST00000462039.5_1_6:74176003-74176057:+|nuORF	REV__ENST00000462039.5_1_6:74176003-74176057:+|nuORF	MSMS	HCT116MG_D190212_S1	1	518.3239135742188	2	518.326068	1034.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.148	1	60.148	59.648	60.648	0								0	0	0	0.76923	1	23180	23180		3.5965	0	1		+		16413	15791	10094	10147	15750	15750					0.12164961176586075
KIIYVLSTV	9	Unmodified	_KIIYVLSTV_					0	0	0			REV__ENST00000462039.5_1_6:74176003-74176057:+|nuORF	REV__ENST00000462039.5_1_6:74176003-74176057:+|nuORF	MSMS	HCT116MG_D190212_S2	2	518.3241577148438	2	518.326068	1034.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.761	1	59.601	59.101	60.101	-0.16012								0	0	0	0.76923	1	23115	23115		3.5965	0	1		+		16414	15791	10094	10147	15751	15751					0.12164961176586075
KIIYVLSTV	9	Unmodified	_KIIYVLSTV_					0	0	0			REV__ENST00000462039.5_1_6:74176003-74176057:+|nuORF	REV__ENST00000462039.5_1_6:74176003-74176057:+|nuORF	MSMS	HCT116MG_D190212_S3	3	518.3238525390625	2	518.326068	1034.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.789	1	58.525	58.025	59.025	-0.26405								0	0	0	0.76973	1	22372	22372		1.8442	0	1		+		16415	15791	10094	10147	15752	15752					0.12164961176586075
KIKAIKKTK	9	Unmodified	_KIKAIKKTK_					0	0	0			REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	353.2529602050781	3	353.253376	1056.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.047	1	53.718	53.218	54.218	-0.32923								0	0	0	0.77025	1	20197	20197		0	0	1		+		16416	17663	10095	10148	15753	15753					0.21220037950092774
KIKAIKKTK	9	Unmodified	_KIKAIKKTK_					0	0	0			REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	353.2534484863281	3	353.253376	1056.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.724	1	54.401	53.901	54.901	-0.32349								0	0	0	0.77025	1	20470	20470		0	0	1		+		16417	17663	10095	10148	15754	15754					0.21220037950092774
KIKAIKKTK	9	Unmodified	_KIKAIKKTK_					0	0	0			REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	REV__tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	353.25335693359375	3	353.253376	1056.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.296	1	54.978	54.478	55.478	-0.31774								0	0	0	0.77025	1	20700	20700		0	0	1		+		16418	17663	10095	10148	15755	15755					0.21220037950092774
KIKEPSQEV	9	Unmodified	_KIKEPSQEV_					0	0	0			REV__FNBP4|p.E507Q|1|0.16|ENSG00000109920|chr11:47736678-47736678|C/G|missense_variant	REV__FNBP4|p.E507Q|1|0.16|ENSG00000109920|chr11:47736678-47736678|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	529.7992553710938	2	529.298039	1056.58152	0.61798	0.0003271	-0.14103	-7.4645E-05	0.47695	0.00025245	529.297861474058	25.064	0.46776	24.785	24.434	24.902	-0.27958					19	8	3	0	0	0	0.2853	1	8832	8832		32.305	1.6689	1	9822600	+		16419	16830	10096	10149	15756	15756					0.0554970826913177
KIKKISMWTS	10	Unmodified	_KIKKISMWTS_					0	0	0		tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	tr|U7SU16|U7SU16_FUSNUSodium/pantothenatesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01275PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	611.3571166992188	2	611.354834	1220.69511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.062	1	52.062	51.562	52.562	0								0	0	0	0.96377	1	19903	19903		1.6526	0.17072	1				16420	18462	10097	10150	15757	15757					0.09359480110515506
KIKKKKKKKH	10	Unmodified	_KIKKKKKKKH_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000081019|ENST00000261441|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MSMS	HCT116MG_D190212_S3	3	647.4622802734375	2	647.463899	1292.91324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.516	1	52.21	51.71	52.71	-0.30639								0	0	0	0.97116	1	19855	19855		0	0	1				16421	1407	10098	10151	15758	15758					0.2785045781513418
KIKKKTITYE	10	Unmodified	_KIKKKTITYE_					0	0	0			REV__tr|U7STH0|U7STH0_FUSNUYgjP-likemetallopeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01053PE=4SV=1	REV__tr|U7STH0|U7STH0_FUSNUYgjP-likemetallopeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01053PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	626.3914184570312	2	626.387188	1250.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.971	1	60.971	60.471	61.471	0								0	0	0	0.95507	1	23516	23516		3.5965	0.8613	1		+		16422	17798	10099	10152	15759	15759					0.14447378188197035
KIKKLCLA	8	Unmodified	_KIKKLCLA_					0	0	0			REV__ENST00000473909.5_1_3:160939100-160952664:+|nuORF	REV__ENST00000473909.5_1_3:160939100-160952664:+|nuORF	MSMS	HCT116MG_D190212_S1	1	458.8035583496094	2	458.804248	915.593944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.829	1	11.829	11.329	12.329	0								0	0	0	0.8837	1	3757	3757		0	0	1		+		16423	13234	10100	10153	15760	15760					0.13277073198457856
KIKKWLKF	8	Unmodified	_KIKKWLKF_					0	0	0			REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	364.243408203125	3	364.2427	1089.70627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.436	1	49.436	48.936	49.936	0								0	0	0	0.8837	1	18837	18837		0	0	1		+		16424	17673	10101	10154	15761	15761					0.16500670266964335
KIKKWLKF	8	Unmodified	_KIKKWLKF_					0	0	0			REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	REV__tr|U7SGS6|U7SGS6_FUSNUDNAtopoisomeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02306PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	364.24273681640625	3	364.2427	1089.70627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.668	1	44.36	43.86	44.86	-0.30759								0	0	0	0.8837	1	16704	16704		0	0	1		+		16425	17673	10101	10154	15762	15762					0.16500670266964335
KIKRMARFKWR	11	Unmodified	_KIKRMARFKWR_					0	0	0			REV__ENST00000530606.1_1_10:77055306-77055468:+|nuORF	REV__ENST00000530606.1_1_10:77055306-77055468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	507.30987548828125	3	507.310002	1518.90818	0.48566	0.00024638	-0.03006	-1.525E-05	0.4556	0.00023113	507.30989155930934	54.254	2.196	54.254	53.307	55.503	0					159	42	6	0	0	0	0.74191	2	20614	20614;20843		0	0	1	1482699999.9999998	+		16426	16311	10102	10155	15763;15764	15763					0.1694783068085144
KIKRMARFKWR	11	Unmodified	_KIKRMARFKWR_					0	0	0			REV__ENST00000530606.1_1_10:77055306-77055468:+|nuORF	REV__ENST00000530606.1_1_10:77055306-77055468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	507.3109436035156	3	507.310002	1518.90818	0.25899	0.00013139	0.45593	0.0002313	0.71492	0.00036269	507.31028220406074	55.009	1.307	54.718	53.829	55.136	-0.29181					36	24	3	0	0	0	0.74191	1	20802	20802		0.094841	0.094841	1	5263000	+		16427	16311	10102	10155	15765	15765					0.1694783068085144
KIKSLFFVVVY	11	Unmodified	_KIKSLFFVVVY_					0	0	0		ENST00000528400.1_1_8:42939784-42940422:+|nuORF	ENST00000528400.1_1_8:42939784-42940422:+|nuORF	ENST00000528400.1_1_8:42939784-42940422:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	448.27667236328125	3	448.275958	1341.80605	0.14303	6.4115E-05	1.0686	0.00047903	1.2116	0.00054315	448.27638969066095	54.965	0.56227	54.777	54.406	54.968	-0.18797					20	10	3	0	0	0	0.74191	1	21200	21200		0.50596	0.051438	1	13087000			16428	8603	10103	10156	15766	15766					0.148814430902803
KIKTKKDKSI	10	Unmodified	_KIKTKKDKSI_					0	0	0		ENSG00000251664|ENST00000398631|PCDHA12;nc|ENSG00000251664|Q9UN75-2|PCDHA12	ENSG00000251664|ENST00000398631|PCDHA12	ENSG00000251664|ENST00000398631|PCDHA12	MSMS	HCT116MG_D190212_S1	1	594.88720703125	2	594.887355	1187.76016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.946	1	38.946	38.446	39.446	0								0	0	0	0.95351	1	14596	14596		3.9444	0	1				16429	6582	10104	10157	15767	15767					0.17378797908008892
KILDLETQL	9	Unmodified	_KILDLETQL_					0	0	0		nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2;ENST00000488909.1_1_9:131260677-131262531:+|nuORF	nc|ENSG00000136811|Q5BJF6-2|ODF2	nc|ENSG00000136811|Q5BJF6-2|ODF2	MSMS	HCT116MG_D190212_S1	1	536.8162231445312	2	536.816064	1071.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.11	1	49.11	48.61	49.61	0								0	0	0	0.014652	1	18704	18704		99.755	14.114	1				16430	3432	10105	10158	15768	15768					0.08463165446005405
KILEELQKV	9	Unmodified	_KILEELQKV_					0	0	0		ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17	ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	550.33984375	2	550.339707	1098.66486	-0.11083	-6.0992E-05	0.17306	9.5243E-05	0.062235	3.4251E-05	550.3396715645322	38.045	0.20766	38.045	37.916	38.123	0					9	3	3	0	0	0	9.6409E-15	1	14235	14235		258.17	56.598	1	22768000			16431	137	10106	10159	15769	15769					0.1194744471699778
KILEELQKV	9	Unmodified	_KILEELQKV_					0	0	0		ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17	ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	550.3399047851562	2	550.339707	1098.66486	0.18898	0.00010401	0.29153	0.00016044	0.48051	0.00026444	550.3398077986998	38.078	0.25812	37.985	37.857	38.115	-0.09301					8	4	3	0	0	0	0.0064513	1	14321	14321		124.95	21.129	1	32017000			16432	137	10106	10159	15770	15770					0.1194744471699778
KILEELQKV	9	Unmodified	_KILEELQKV_					0	0	0		ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17	ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	550.7667236328125	2	550.339707	1098.66486	0.41092	0.00022614	0.35511	0.00019543	0.76603	0.00042158	550.3396439439034	38.316	0.20714	38.014	37.885	38.092	-0.30137					5	3	2	0	0	0	0.29167	1	14203	14203		31.636	12.915	1	1798100			16433	137	10106	10159	15771	15771					0.1194744471699778
KILKAKKFLL	10	Unmodified	_KILKAKKFLL_					0	0	0		tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1	tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1	tr|U7T1X1|U7T1X1_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00620PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	601.4236450195312	2	601.423377	1200.8322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.305	1	30.305	29.805	30.805	0								0	0	0	0.96911	1	11110	11110		0.45834	0	1				16434	18561	10107	10160	15772	15772					0.23981757052411012
KILPDLNTV	9	Unmodified	_KILPDLNTV_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	HCT116MG_D190212_S1	1	506.8236083984375	2	506.8055	1011.59645	0.41086	0.00020823	0.15088	7.6465E-05	0.56174	0.00028469	506.80554517032385	45.445	0.20782	45.445	45.295	45.503	0					6	3	2	0	0	0	0.099453	1	17217	17217		49.554	25.534	1	9907000			16435	3750	10108	10161	15773	15773					0.09111200137135711
KILPDLNTV	9	Unmodified	_KILPDLNTV_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S2	2	506.8061828613281	2	506.8055	1011.59645	0.36173	0.00018333	0.50839	0.00025765	0.87011	0.00044098	506.80570580652244	45.507	0.30874	45.415	45.256	45.565	-0.092476					9	5	2	0	0	0	0.14362	1	17321	17321		49.554	11.58	1	43438000			16436	3750	10108	10161	15774	15774					0.09111200137135711
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	HCT116MG_D190212_S1	1	492.3103942871094	2	492.310418	982.606283	0.40375	0.00019877	0.22255	0.00010956	0.6263	0.00030833	492.31044048791176	46.928	0.31096	46.928	46.751	47.062	0					12	5	3	0	0	0	0.034046	1	17824	17824		82.529	30.261	1	48916000			16437	3822	10109	10162	15775	15775					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	HCT116MG_D190212_S2	2	492.81256103515625	2	492.310418	982.606283	0.58911	0.00029002	0.39033	0.00019217	0.97944	0.00048219	492.3105469181993	47.06	0.41198	46.938	46.718	47.13	-0.12175					18	7	3	0	0	0	0.12205	2	17923	17923;17926		53.833	9.9745	1	129040000			16438	3822	10109	10162	15776;15777	15776					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	HCT116MG_D190212_S2	2	983.6134033203125	1	983.613559	982.606283	1.0513	0.0010341	0.13393	0.00013174	1.1853	0.0011658	983.6136556736164	47.019	0.20543	46.897	46.82	47.026	-0.12175					6	3	2	0	0	0	0.090581	1	17951	17951		60.074	14.053	1	29900000			16439	3822	10109	10162	15778	15778					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	HCT116MG_D190212_S3	3	492.31048583984375	2	492.310418	982.606283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.318	1	47.002	46.502	47.502	-0.31525								0	0	0	0.1107	1	17766	17766		53.833	3.8998	1				16440	3822	10109	10162	15779	15779					0.11428388142519452
KILQELPSV	9	Unmodified	_KILQELPSV_					0	0	0		nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;IWS1|p.S802Afs*7|2|0.29|ENSG00000163166|chr2:127481100-127481100|T/-|frameshift_variant;ENSG00000163166|ENST00000295321|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	MULTI-MSMS	HCT116MG_D190212_S2	2	513.8134155273438	2	513.813325	1025.6121	0.28055	0.00014415	0.071669	3.6825E-05	0.35222	0.00018098	513.8132590015084	45.236	0.41663	45.144	44.891	45.307	-0.092472					17	7	3	0	0	0	0.0201	1	17188	17188		96.367	25.233	1	23606000			16441	4584	10110	10163	15780	15780					0.10031486654179389
KILRSGDLKV	10	Unmodified	_KILRSGDLKV_					0	0	0			REV__ENST00000444127.1_1_1:68708159-68708657:-|nuORF	REV__ENST00000444127.1_1_1:68708159-68708657:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	376.9080810546875	3	376.908157	1127.70264	0.090288	3.403E-05	-0.0086556	-3.2624E-06	0.081633	3.0768E-05	376.9080372719915	33.042	0.20187	33.042	32.887	33.089	0					6	3	2	0	0	0	0.20072	1	12215	12215		44.945	0	1	7267100	+		16442	13364	10111	10164	15781	15781					0.14389955702449697
KINEAIVAV	9	Unmodified	_KINEAIVAV_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-MSMS	HCT116MG_D190212_S1	1	478.79193115234375	2	478.792392	955.570232	-0.065468	-3.1345E-05	-0.71363	-0.00034168	-0.7791	-0.00037303	478.7919692189445	39.255	0.28625	39.255	39.111	39.398	0					12	6	3	0	0	0	0.0051486	1	14710	14710		136.33	51.061	1	40541000			16443	1485	10112	10165	15782	15782					0.09066930965650499
KINEAIVAV	9	Unmodified	_KINEAIVAV_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-MSMS	HCT116MG_D190212_S2	2	478.792236328125	2	478.792392	955.570232	0.46692	0.00022356	0.21436	0.00010263	0.68127	0.00032619	478.79232230785016	39.226	0.30957	39.148	38.968	39.277	-0.077835					10	5	3	0	0	0	0.0051486	1	14762	14762		136.33	51.061	1	87860000			16444	1485	10112	10165	15783	15783					0.09066930965650499
KINEAIVAV	9	Unmodified	_KINEAIVAV_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-MSMS	HCT116MG_D190212_S2	2	956.5787353515625	1	956.577508	955.570232	0.8768	0.00083873	-0.19651	-0.00018798	0.68029	0.00065075	956.5773170232835	39.242	0.2581	39.164	38.968	39.226	-0.077835					7	4	2	0	0	0	0.010834	1	14774	14774		111.29	48.714	1	31546000			16445	1485	10112	10165	15784	15784					0.09066930965650499
KINGREHKR	9	Unmodified	_KINGREHKR_					0	0	0		OLIG3|p.R93H|1|0.25|ENSG00000177468|chr6:137493893-137493893|C/T|missense_variant	OLIG3|p.R93H|1|0.25|ENSG00000177468|chr6:137493893-137493893|C/T|missense_variant	OLIG3|p.R93H|1|0.25|ENSG00000177468|chr6:137493893-137493893|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	569.3330078125	2	569.333613	1136.65267	0.29872	0.00017007	1.5195	0.00086508	1.8182	0.0010352	569.3334888993976	47.427	0.42729	47.427	47.269	47.696	0					18	8	3	0	0	0	0.69329	1	18092	18092		5.7319	0	1	12586000			16446	9715	10113	10166	15785	15785					0.08981265817169515
KIQEILTQV	9	Unmodified	_KIQEILTQV_					0	0	0		ENST00000454907.1_1_6:167114584-167114857:-|nuORF;nc|ENSG00000136231|O00425-2|IGF2BP3;ENSG00000136231|ENST00000258729|IGF2BP3	ENST00000454907.1_1_6:167114584-167114857:-|nuORF	ENST00000454907.1_1_6:167114584-167114857:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	536.3235473632812	2	536.324057	1070.63356	0.31966	0.00017144	-0.5346	-0.00028672	-0.21494	-0.00011528	536.3237708785618	43.652	0.20613	43.652	43.575	43.781	0					6	3	2	0	0	0	0.026999	1	16525	16525		89.401	6.8714	1	25015000			16447	3401	10114	10167	15786	15786					0.10106871682887686
KIQLKRQR	8	Unmodified	_KIQLKRQR_					0	0	0		tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	357.235595703125	3	357.236608	1068.688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.78	1	61.638	61.138	62.138	-0.14227								0	0	0	0.8837	1	23935	23935		0.40072	0	1				16448	18607	10115	10168	15787	15787					0.15639928344967302
KIQLKRQR	8	Unmodified	_KIQLKRQR_					0	0	0		tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	357.235595703125	3	357.236608	1068.688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.998	1	57.723	57.223	58.223	-0.27434								0	0	0	0.8837	1	22053	22053		0.40072	0	1				16449	18607	10115	10168	15788	15788					0.15639928344967302
KIQLKRQR	8	Unmodified	_KIQLKRQR_					0	0	0		tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	tr|U7T3Q5|U7T3Q5_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00365PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	357.2357482910156	3	357.236608	1068.688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.124	1	60.878	60.378	61.378	-0.24588								0	0	0	0.8837	1	23322	23322		1.4819	0	1				16450	18607	10115	10168	15789	15789					0.15639928344967302
KIREEDKSP	9	Unmodified	_KIREEDKSP_					0	0	0		MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant;MYO18B|p.K1556Sfs*19|1|0.16|ENSG00000133454|chr22:25895276-25895276|A/-|frameshift_variant;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.F144Sfs*5|1|0.12|ENSG00000133454|chr22:25768342-25768342|C/-|frameshift_variant;MYO18B|p.P177Lfs*55|2|0.24|ENSG00000133454|chr22:25768440-25768440|C/-|frameshift_variant;MYO18B|p.V340Cfs*3|1|0.35|ENSG00000133454|chr22:25768931-25768931|G/-|frameshift_variant	MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MYO18B|p.I1502Ffs*3|1|0.09|ENSG00000133454|chr22:25891370-25891370|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	551.3168334960938	2	551.29857	1100.58259	0.48639	0.00026814	-0.023196	-1.2788E-05	0.46319	0.00025536	551.2985279348958	18.409	0.78178	18.409	17.933	18.714	0					33	14	3	0	0	0	0.2597	1	6150	6150		18.146	0	1	9142000			16451	3242	10116	10169	15790	15790					0.03631922638055585
KIRRKIRNKQS	11	Unmodified	_KIRRKIRNKQS_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MSMS	HCT116MG_D190212_S1	1	476.3063049316406	3	476.307426	1425.90045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.49	1	46.49	45.99	46.99	0								0	0	0	0.9598	1	17640	17640		0.40827	0.26837	1				16452	1109	10117	10170	15791	15791					0.20453394684977866
KIRRKIRNKQS	11	Unmodified	_KIRRKIRNKQS_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MSMS	HCT116MG_D190212_S3	3	476.3064270019531	3	476.307426	1425.90045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.418	1	56.134	55.634	56.634	-0.28367								0	0	0	0.9598	1	21417	21417		0.40827	0.26837	1				16453	1109	10117	10170	15792	15792					0.20453394684977866
KIRRKIRNKQS	11	Unmodified	_KIRRKIRNKQS_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MSMS	HCT116MG_D190212_S3	3	476.3066711425781	3	476.307426	1425.90045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.178	1	57.908	57.408	58.408	-0.26932								0	0	0	0.9598	1	22126	22126		0.40827	0.2854	1				16454	1109	10117	10170	15793	15793					0.20453394684977866
KIRRKIRNKQS	11	Unmodified	_KIRRKIRNKQS_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MSMS	HCT116MG_D190212_S4	4	476.19866943359375	3	476.307426	1425.90045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.228	1	40.85	40.35	41.35	-0.37732								0	0	0	0.9598	1	15154	15154		0.40827	0	1				16455	1109	10117	10170	15794	15794					0.20453394684977866
KIRRNKIWG	9	Unmodified	_KIRRNKIWG_					0	0	0		ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11;nc|ENSG00000138081|Q86XK2-2|FBXO11	ENSG00000138081|ENST00000403359|FBXO11	ENSG00000138081|ENST00000403359|FBXO11	MULTI-MSMS	HCT116MG_D190212_S1	1	585.8642578125	2	585.864549	1169.71454	0.48171	0.00028222	-0.71287	-0.00041765	-0.23117	-0.00013543	585.8639808981594	60.513	0.31118	60.513	60.335	60.646	0					12	5	3	0	0	0	0.74607	1	23334	23334		2.0598	0.40713	1	36158000			16456	3529	10118	10171	15795	15795					0.13647617236301812
KISKDIKKFL	10	Unmodified	_KISKDIKKFL_					0	0	0			REV__tr|U7SSB7|U7SSB7_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01571PE=4SV=1	REV__tr|U7SSB7|U7SSB7_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01571PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	407.265380859375	3	407.263941	1218.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.185	1	33.891	33.391	34.391	-0.29419								0	0	0	0.92272	1	12574	12574		6.1918	0	1		+		16457	17764	10119	10172	15796	15796					0.16935985913414697
KISTITPQI	9	Unmodified	_KISTITPQI_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	500.80596923828125	2	500.8055	999.596446	0.29847	0.00014947	0.32239	0.00016146	0.62086	0.00031093	500.80561901513755	40.027	0.31101	39.954	39.739	40.05	-0.072838					9	5	2	0	0	0	0.05892	1	15093	15093		70.332	20.778	1	11715000			16458	806	10120	10173	15797	15797					0.09663200137140393
KITTTVGLN	9	Unmodified	_KITTTVGLN_					0	0	0		ARFRP1-ADRM1|1|fusion;ENST00000424545.2_1_20:62337059-62338084:-|nuORF;nc|ENSG00000101246|Q13795-4|ARFRP1;ENST00000609537.5_1_20:62333085-62338084:-|nuORF;nc|ENSG00000101246|Q13795-3|ARFRP1;nc|ENSG00000101246|Q13795-2|ARFRP1;ENSG00000101246|ENST00000622789|ARFRP1	ARFRP1-ADRM1|1|fusion	ARFRP1-ADRM1|1|fusion	MULTI-SECPEP	HCT116MG_D190212_S1	1	473.2719421386719	2	473.782025	945.549496	0.35418	0.0001678	-0.11991	-5.6812E-05	0.23427	0.00011099	473.78186443833914	24.595	0.15669	24.595	24.516	24.673	0					4	2	2	0	0	0	0.19551	1	8834	8834		20.454	0	1	3270700			16459	169	10121	10174	15798	15798					0.07454340585991304
KITVRWFRWRL	11	Unmodified	_KITVRWFRWRL_					0	0	0			REV__chr16:50613215-50621602|103|14.49|0.09|7.38|+|2|TE_info:L2b,L2b_dup80878,L2,LINE,donor,-,50612862,50613215|None,NKD1|5	REV__chr16:50613215-50621602|103|14.49|0.09|7.38|+|2|TE_info:L2b,L2b_dup80878,L2,LINE,donor,-,50612862,50613215|None,NKD1|5	MSMS	HCT116MG_D190212_S1	1	520.78759765625	3	520.98065	1559.92012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.828	1	18.828	18.328	19.328	0								0	0	0	0.9619	1	6495	6495		0.094841	0	1		+		16460	10185	10122	10175	15799	15799					0.16255770695738647
KIVAPAAA	8	Unmodified	_KIVAPAAA_					0	0	0			REV__ENST00000361175.8_1_10:89506448-89506670:+|nuORF	REV__ENST00000361175.8_1_10:89506448-89506670:+|nuORF	MSMS	HCT116MG_D190212_S3	3	370.7350769042969	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.682	1	61.444	60.944	61.944	-0.2387								0	0	0	0.8837	1	23547	23547		0.79363	0	1		+		16461	15090	10123	10176	15800	15800					0.07907336048208435
KIVDFSYSV	9	Unmodified	_KIVDFSYSV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000453867.6_3_15:40509736-40545453:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	HCT116MG_D190212_S2	2	529.281982421875	2	529.281857	1056.54916	0.37745	0.00019978	-0.089148	-4.7184E-05	0.2883	0.00015259	529.2817800457977	45.514	0.25779	45.422	45.256	45.514	-0.092472					9	4	3	0	0	0	0.06555	1	17324	17324		82.529	17.294	1	39373000			16462	4306	10124	10177	15801	15801					0.023149208661379816
KIVDFSYSV	9	Unmodified	_KIVDFSYSV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000453867.6_3_15:40509736-40545453:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MATCH	HCT116MG_D190212_S1	1		2	529.281857	1056.54916	0.35761	0.00018928	0.5746	0.00030412	0.93221	0.0004934	529.282055757197	45.462	0.15637	45.462	45.347	45.503	0	0.020126	0.00044681	NaN	82.529	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8511900			16463	4306	10124	10177							0.023149208661379816
KIVTRPQEP	9	Unmodified	_KIVTRPQEP_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MSMS	HCT116MG_D190212_S3	3	534.3120727539062	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.104	1	29.855	29.355	30.355	-0.24946								0	0	0	0.768	1	10959	10959		7.9102	0	1		+		16464	12216	10125	10178	15802	15802					0.08285120742925756
KIWDPVHRV	9	Unmodified	_KIWDPVHRV_					0	0	0		TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant;TPP2|p.F722Lfs*12|1|0.06|ENSG00000134900|chr13:102643366-102643367|-/AAACTTA|frameshift_variant;nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant	TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	575.330322265625	2	575.330008	1148.64546	0.40236	0.00023149	0.21305	0.00012257	0.61541	0.00035406	575.3298755145075	32.719	0.31237	32.508	32.325	32.638	-0.21135					8	5	2	0	0	0	0.20983	1	12140	12140		40.239	14.84	1	26921000			16465	3314	10126	10179	15803	15803					0.07708533216737123
KIWDPVHRV	9	Unmodified	_KIWDPVHRV_					0	0	0		TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant;TPP2|p.F722Lfs*12|1|0.06|ENSG00000134900|chr13:102643366-102643367|-/AAACTTA|frameshift_variant;nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant	TPP2|p.F663Lfs*13|1|0.13|ENSG00000134900|chr13:102640342-102640342|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	384.2234191894531	3	383.889097	1148.64546	-0.027166	-1.0429E-05	-0.40832	-0.00015675	-0.43549	-0.00016718	384.2232397330855	32.737	0.20863	32.525	32.377	32.586	-0.21135					6	3	2	0	0	0	0.045679	1	12144	12144		62.869	19.01	1	21513000			16466	3314	10126	10179	15804	15804					0.07708533216737123
KIWERIWSA	9	Unmodified	_KIWERIWSA_					0	0	0		ENST00000532383.5_1_11:10825070-10825157:-|nuORF	ENST00000532383.5_1_11:10825070-10825157:-|nuORF	ENST00000532383.5_1_11:10825070-10825157:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	594.83056640625	2	594.82984	1187.64513	0.79919	0.00047538	0.10614	6.3135E-05	0.90533	0.00053852	594.8299150578476	45.01	0.26202	44.917	44.787	45.049	-0.092472					9	4	3	0	0	0	0.0060369	1	17110	17110		128.57	66	1	39505000			16467	8634	10127	10180	15805	15805					0.058811134968891565
KIWERIWSA	9	Unmodified	_KIWERIWSA_					0	0	0		ENST00000532383.5_1_11:10825070-10825157:-|nuORF	ENST00000532383.5_1_11:10825070-10825157:-|nuORF	ENST00000532383.5_1_11:10825070-10825157:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	594.82984	1187.64513	0.55854	0.00033224	-0.076243	-4.5352E-05	0.4823	0.00028688	594.8297812389209	44.989	0.25925	44.989	44.88	45.139	0	0.036124	-0.00018815	NaN	128.57	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7646400			16468	8634	10127	10180							0.058811134968891565
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	HCT116MG_D190212_S1	1	532.7849731445312	2	532.784764	1063.55498	0.33984	0.00018106	0.15945	8.4953E-05	0.49929	0.00026601	532.7848320249203	33.789	0.46872	33.789	33.607	34.076	0					30	8	5	0	0	0	0.020353	1	12517	12517		96.111	20.35	1	395730000			16469	2762	10128	10181	15806	15806					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	HCT116MG_D190212_S1	1	1064.5634765625	1	1064.56225	1063.55498	0.72822	0.00077524	0.14967	0.00015933	0.87789	0.00093457	1064.5622697873048	33.815	0.36522	33.815	33.659	34.024	0					14	6	3	0	0	0	0.02327	1	12536	12536		93.166	27.931	1	30418000			16470	2762	10128	10181	15807	15807					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7843017578125	2	532.784764	1063.55498	0.41171	0.00021935	-0.16697	-8.8957E-05	0.24474	0.00013039	532.7846511673112	33.961	0.57107	33.786	33.604	34.175	-0.17512					29	10	4	0	0	0	0.012496	3	12610	12610;12655;12675		107.19	31.426	1	989050000			16471	2762	10128	10181	15808;15809;15810	15808					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	HCT116MG_D190212_S2	2	1064.5623779296875	1	1064.56225	1063.55498	0.50651	0.00053921	0.21331	0.00022708	0.71982	0.0007663	1064.5623074495343	33.961	0.4153	33.786	33.604	34.02	-0.17512					18	7	4	0	0	0	0.02327	1	12622	12622		93.166	27.931	1	197750000			16472	2762	10128	10181	15811	15811					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	HCT116MG_D190212_S3	3	532.7855224609375	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.18	1	33.886	33.386	34.386	-0.29419								0	0	0	0.026669	1	12572	12572		85.642	10.713	1				16473	2762	10128	10181	15812	15812					0.025740193778119647
KIYIRMPVSIK	11	Unmodified	_KIYIRMPVSIK_					0	0	0			REV__ANKUB1|p.Q448Pfs*25|1|0.41|ENSG00000206199|chr3:149767319-149767320|-/G|frameshift_variant	REV__ANKUB1|p.Q448Pfs*25|1|0.41|ENSG00000206199|chr3:149767319-149767320|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	674.4140625	2	674.412683	1346.81081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.338	1	45.338	44.838	45.838	0								0	0	0	0.95343	1	17175	17175		4.5289	0.93237	1		+		16474	9949	10129	10182	15813	15813					0.15128003961376635
KKAAPVLDKIK	11	Unmodified	_KKAAPVLDKIK_					0	0	0		tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	tr|U7T5R6|U7T5R6_FUSNUFlavodoxin-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00147PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	605.8480224609375	2	605.897723	1209.78089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.372	1	48.229	47.729	48.729	-0.1437								0	0	0	0.94008	1	18479	18479		11.518	0.02317	1				16475	18635	10130	10183	15814	15814					0.18439388287674774
KKAAVAAKHIM	11	Unmodified	_KKAAVAAKHIM_					0	0	0			REV__ENSG00000278053|ENST00000617633|DDX52	REV__ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	HCT116MG_D190212_S2	2	584.3570556640625	2	584.355168	1166.69578	0.79882	0.0004668	2.002	0.0011699	2.8008	0.0016366	584.3562719612781	48.003	1.4371	47.87	46.911	48.348	-0.13281					58	27	3	0	0	0	0.74191	1	18520	18520		4.897	0.56777	1	63683000	+		16476	14469	10131	10184	15815	15815					0.11910319550224813
KKAGLAAV	8	Unmodified	_KKAGLAAV_					0	0	0		ENST00000555004.2_3_14:96554171-96554918:+|nuORF	ENST00000555004.2_3_14:96554171-96554918:+|nuORF	ENST00000555004.2_3_14:96554171-96554918:+|nuORF	MSMS	HCT116MG_D190212_S3	3	379.2484436035156	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.258	1	50.946	50.446	51.446	-0.31166								0	0	0	0.8837	1	19349	19349		2.3027	0	1				16477	8783	10132	10185	15816	15816					0.09779024939552983
KKAGRSKGKKK	11	Unmodified	_KKAGRSKGKKK_					0	0	0		ENST00000519694.1_1_7:27208459-27208531:+|nuORF	ENST00000519694.1_1_7:27208459-27208531:+|nuORF	ENST00000519694.1_1_7:27208459-27208531:+|nuORF	MSMS	HCT116MG_D190212_S1	1	608.4036254882812	2	608.404038	1214.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.984	1	36.984	36.484	37.484	0								0	0	0	0.95731	1	13803	13803		2.4985	0.84587	1				16478	8551	10133	10186	15817	15817					0.19471844470581345
KKAIVSSI	8	Unmodified	_KKAIVSSI_					0	0	0			REV__tr|U7SL12|U7SL12_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02030PE=4SV=1	REV__tr|U7SL12|U7SL12_FUSNUTrksystempotassiumuptakeproteinTrkAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02030PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	423.27490234375	2	423.276378	844.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.496	1	57.202	56.702	57.702	-0.29465								0	0	0	0.8837	1	21583	21583		0.69038	0	1		+		16479	17705	10134	10187	15818	15818					0.10971563282521402
KKAKKAKKAL	10	Unmodified	_KKAKKAKKAL_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1;ENST00000494833.1_1_22:50214627-50216774:-|nuORF	nc|ENSG00000100425|O95696|BRD1	nc|ENSG00000100425|O95696|BRD1	MSMS	HCT116MG_D190212_S2	2	557.3942260742188	2	557.395151	1112.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.765	1	49.601	49.101	50.101	-0.16369								0	0	0	0.95648	1	19056	19056		3.2813	0	1				16480	1708	10135	10188	15819	15819					0.22387129215735513
KKAKKKKKT	9	Unmodified	_KKAKKKKKT_					0	0	0			REV__ENSG00000157895|ENST00000288757|C12orf43	REV__ENSG00000157895|ENST00000288757|C12orf43	MSMS	HCT116MG_D190212_S2	2	544.5335693359375	2	544.387326	1086.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.868	1	49.705	49.205	50.205	-0.16369								0	0	0	0.76923	1	19099	19099		3.5965	3.0717	1		+		16481	12769	10136	10189	15820	15820					0.22018842698707886
KKAKKKKKT	9	Unmodified	_KKAKKKKKT_					0	0	0			REV__ENSG00000157895|ENST00000288757|C12orf43	REV__ENSG00000157895|ENST00000288757|C12orf43	MSMS	HCT116MG_D190212_S4	4	544.3887329101562	2	544.387326	1086.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.735	1	50.38	49.88	50.88	-0.35483								0	0	0	0.76973	1	18860	18860		1.8442	1.3195	1		+		16482	12769	10136	10189	15821	15821					0.22018842698707886
KKAKKKLKRKK	11	Unmodified	_KKAKKKLKRKK_					0	0	0			REV__ENSG00000157895|ENST00000288757|C12orf43	REV__ENSG00000157895|ENST00000288757|C12orf43	MSMS	HCT116MG_D190212_S1	1	692.50146484375	2	692.503555	1382.99256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.637	1	16.637	16.137	17.137	0								0	0	0	0.96149	1	5612	5612		0.30703	0	1		+		16483	12769	10137	10190	15822	15822					0.31638104769285746
KKAKKKRSG	9	Unmodified	_KKAKKKRSG_					0	0	0			REV__ENSG00000072954|ENST00000187762|TMEM38A	REV__ENSG00000072954|ENST00000187762|TMEM38A	MSMS	HCT116MG_D190212_S2	2	515.7150268554688	2	515.845825	1029.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.175	1	48.042	47.542	48.542	-0.13281								0	0	0	0.76913	1	18397	18397		3.9444	0.3479	1		+		16484	10785	10138	10191	15823	15823					0.16344525970703216
KKAKLVLSL	9	Unmodified	_KKAKLVLSL_					0	0	0		CNTNAP2|p.W833Gfs*18|1|0.41|ENSG00000174469|chr7:148118226-148118226|C/-|frameshift_variant;CNTNAP2|p.H1113Pfs*52|1|0.35|ENSG00000174469|chr7:148229731-148229732|-/C|frameshift_variant;ENSG00000174469|ENST00000361727|CNTNAP2	CNTNAP2|p.W833Gfs*18|1|0.41|ENSG00000174469|chr7:148118226-148118226|C/-|frameshift_variant	CNTNAP2|p.W833Gfs*18|1|0.41|ENSG00000174469|chr7:148118226-148118226|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	500.23687744140625	2	500.349877	998.685202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.124	1	47.991	47.491	48.491	-0.13281								0	0	0	0.76834	1	18376	18376		6.7232	2.7788	1				16485	504	10139	10192	15824	15824					0.18580660167458518
KKAKTLLLVLN	11	Unmodified	_KKAKTLLLVLN_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant;SACS|p.L2871Ffs*29|1|0.26|ENSG00000151835|chr13:23335263-23335264|-/A|frameshift_variant;SACS|p.K2931Nfs*22|1|0.23|ENSG00000151835|chr13:23335083-23335083|T/-|frameshift_variant;SACS|p.L3102*|1|0.33|ENSG00000151835|chr13:23334571-23334571|A/-|frameshift_variant;SACS|p.S2058Ffs*2|1|0.3|ENSG00000151835|chr13:23337703-23337704|-/A|frameshift_variant;SACS|p.P2063Sfs*7|1|0.36|ENSG00000151835|chr13:23337689-23337690|-/A|frameshift_variant;SACS|p.S2058Lfs*19|1|0.1|ENSG00000151835|chr13:23337704-23337704|A/-|frameshift_variant;SACS|p.A1848Qfs*2|1|0.1|ENSG00000151835|chr13:23338334-23338334|C/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S4	4	414.24822998046875	3	414.283224	1239.82784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.706	1	58.423	57.923	58.923	-0.28305								0	0	0	0.96149	1	22073	22073		0.08335	0	1				16486	4129	10140	10193	15825	15825					0.21752247838867333
KKAMASELARQ	11	Unmodified	_KKAMASELARQ_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MSMS	HCT116MG_D190212_S2	2	616.69970703125	2	616.842622	1231.67069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.102	1	60.953	60.453	61.453	-0.14852								0	0	0	0.95686	1	23661	23661		2.7352	0.23671	1		+		16487	13783	10141	10194	15826	15826					0.06412219956996523
KKAPELPSRR	10	Unmodified	_KKAPELPSRR_					0	0	0		ENST00000238647.4_1_14:77494353-77494896:-|nuORF	ENST00000238647.4_1_14:77494353-77494896:-|nuORF	ENST00000238647.4_1_14:77494353-77494896:-|nuORF	MSMS	HCT116MG_D190212_S3	3	591.6369018554688	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.029	1	50.715	50.215	51.215	-0.31381								0	0	0	0.91971	1	19258	19258		11.495	0.67078	1				16488	6778	10142	10195	15827	15827					0.1209158979120275
KKAPKKRRIS	10	Unmodified	_KKAPKKRRIS_					0	0	0		nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	MSMS	HCT116MG_D190212_S4	4	606.4053344726562	2	606.406581	1210.79861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.663	1	52.323	51.823	52.823	-0.34023								0	0	0	0.96453	1	19639	19639		1.4819	0.15237	1				16489	978	10143	10196	15828	15828					0.201641483332196
KKASKTHKQR	10	Unmodified	_KKASKTHKQR_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	HCT116MG_D190212_S2	2	606.370361328125	2	606.370195	1210.72584	0.68118	0.00041305	-0.84134	-0.00051016	-0.16016	-9.7115E-05	606.3695019551857	49.013	1.0637	48.859	48.174	49.238	-0.15405					43	20	3	0	0	0	0.87059	1	18521	18521		5.7319	0.43497	1	152560000			16490	1978	10144	10197	15829	15829					0.12890394539772387
KKAVETIFNVK	11	Unmodified	_KKAVETIFNVK_					0	0	0		tr|U7T2K0|U7T2K0_FUSNULargeribosomalsubunitproteinuL23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplWPE=3SV=1	tr|U7T2K0|U7T2K0_FUSNULargeribosomalsubunitproteinuL23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplWPE=3SV=1	tr|U7T2K0|U7T2K0_FUSNULargeribosomalsubunitproteinuL23OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplWPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	638.80419921875	2	638.884813	1275.75507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.507	1	14.188	13.688	14.688	-0.31952								0	0	0	0.94538	1	4754	4754		8.7454	0	1				16491	18579	10145	10198	15830	15830					0.12822494045394706
KKCIFLLFIN	10	Unmodified	_KKCIFLLFIN_					0	0	0		MLH1|p.N287Tfs*10|1|0.36|ENSG00000076242|chr3:37017571-37017571|A/-|frameshift_variant;nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1	MLH1|p.N287Tfs*10|1|0.36|ENSG00000076242|chr3:37017571-37017571|A/-|frameshift_variant	MLH1|p.N287Tfs*10|1|0.36|ENSG00000076242|chr3:37017571-37017571|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	620.3722534179688	2	619.87012	1237.72569	0.44504	0.00027587	0.099652	6.1772E-05	0.54469	0.00033764	620.3720494569881	54.379	0.87126	54.19	53.687	54.559	-0.1894					26	16	2	0	0	0	0.87945	1	20965	20965		3.5965	0	1	15382000			16492	1332	10146	10199	15831	15831					0.11633258495589871
KKCIFVNIN	9	Unmodified	_KKCIFVNIN_					0	0	0			REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2	REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2	MSMS	HCT116MG_D190212_S1	1	360.20709228515625	3	360.207438	1077.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.164	1	46.164	45.664	46.664	0								0	0	0	0.76954	1	17507	17507		2.4985	0.75621	1		+		16493	17075	10147	10200	15832	15832					0.064789663592137
KKCKHIFRTWK	11	Unmodified	_KKCKHIFRTWK_					0	0	0		ENST00000360416.7_1_17:8413248-8415800:-|nuORF	ENST00000360416.7_1_17:8413248-8415800:-|nuORF	ENST00000360416.7_1_17:8413248-8415800:-|nuORF	MSMS	HCT116MG_D190212_S4	4	737.9299926757812	2	737.926823	1473.83909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.514	1	49.152	48.652	49.652	-0.36213								0	0	0	0.95636	1	18368	18368		2.9952	1.3426	1				16494	7349	10148	10201	15833	15833					0.12112746661318852
KKCVVIDL	8	Unmodified	_KKCVVIDL_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	MSMS	HCT116MG_D190212_S1	1	459.28045654296875	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.283	1	47.283	46.783	47.783	0								0	0	0	0.8837	1	17962	17962		2.5775	0	1				16495	3877	10149	10202	15834	15834					0.07996490064874706
KKCVVIDL	8	Unmodified	_KKCVVIDL_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	MSMS	HCT116MG_D190212_S4	4	459.2801818847656	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.483	1	50.124	49.624	50.624	-0.35878								0	0	0	0.8837	1	18758	18758		5.2307	0	1				16496	3877	10149	10202	15835	15835					0.07996490064874706
KKCVVIDL	8	Unmodified	_KKCVVIDL_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	MSMS	HCT116MG_D190212_S4	4	459.3429260253906	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.666	1	58.383	57.883	58.883	-0.28305								0	0	0	0.8837	1	22056	22056		2.3027	0	1				16497	3877	10149	10202	15836	15836					0.07996490064874706
KKDAIDWLRVT	11	Unmodified	_KKDAIDWLRVT_					0	0	0			REV__nc|ENSG00000165521|Q05BV3|EML5	REV__nc|ENSG00000165521|Q05BV3|EML5	MSMS	HCT116MG_D190212_S2	2	672.8828735351562	2	672.885344	1343.75613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.336	1	48.192	47.692	48.692	-0.1437								0	0	0	0.94385	1	18464	18464		9.544	1.3884	1		+		16498	13058	10150	10203	15837	15837					0.09800708414286419
KKDDKILRV	9	Unmodified	_KKDDKILRV_					0	0	0		tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	372.243408203125	3	372.236274	1113.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.105	1	58.827	58.327	59.327	-0.27884								0	0	0	0.76973	1	22234	22234		0.96228	0	1				16499	18383	10151	10204	15838	15838					0.13469669185428756
KKDKKKKRKH	10	Unmodified	_KKDKKKKRKH_					0	0	0		NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant	NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant	NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	662.4390869140625	2	662.438412	1322.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.888	1	59.728	59.228	60.228	-0.16012								0	0	0	0.9696	1	23166	23166		0.35063	0	1				16500	9705	10152	10205	15839	15839					0.21375508770302076
KKDKKKKRKH	10	Unmodified	_KKDKKKKRKH_					0	0	0		NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant	NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant	NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	662.4400634765625	2	662.438412	1322.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.695	1	60.546	60.046	61.046	-0.14852								0	0	0	0.9696	1	23496	23496		0.35063	0	1				16501	9705	10152	10205	15840	15840					0.21375508770302076
KKDLITMSP	9	Unmodified	_KKDLITMSP_					0	0	0			REV__ENSG00000171492|ENST00000337338|LRRC8D	REV__ENSG00000171492|ENST00000337338|LRRC8D	MULTI-SECPEP	HCT116MG_D190212_S2	2	516.8265380859375	2	516.791535	1031.56852	0.44288	0.00022888	-0.48901	-0.00025272	-0.04613	-2.384E-05	516.791240654287	44.54	0.26319	44.455	44.376	44.639	-0.084797					5	4	2	0	0	0	0.20889	1	16894	16894		18.146	5.1039	1	19808000	+		16502	13348	10153	10206	15841	15841					0.053995538853769176
KKDLKKVKK	9	Unmodified	_KKDLKKVKK_					0	0	0		CYLC1|p.S310L|1|0.42|ENSG00000183035|chrX:83873637-83873637|C/T|missense_variant	CYLC1|p.S310L|1|0.42|ENSG00000183035|chrX:83873637-83873637|C/T|missense_variant	CYLC1|p.S310L|1|0.42|ENSG00000183035|chrX:83873637-83873637|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	372.25897216796875	3	372.260531	1113.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.038	1	42.038	41.538	42.538	0								0	0	0	0.76998	1	15845	15845		0.96228	0	1				16503	625	10154	10207	15842	15842					0.20743422978830495
KKEDDSDD	8	Unmodified	_KKEDDSDD_					0	0	0			REV__ENSG00000110400|ENST00000264025|NECTIN1	REV__ENSG00000110400|ENST00000264025|NECTIN1	MSMS	HCT116MG_D190212_S2	2	476.19866943359375	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.514	1	10.24	9.7401	10.74	-0.27365								0	0	0	0.8837	1	3330	3330		2.5775	0	1		+		16504	11398	10155	10208	15843	15843					-0.09429177100378183
KKEKKKAKTV	10	Unmodified	_KKEKKKAKTV_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MSMS	HCT116MG_D190212_S1	1	594.3471069335938	2	594.395348	1186.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.408	1	47.408	46.908	47.908	0								0	0	0	0.95351	1	18012	18012		3.9444	0.3479	1				16505	2910	10156	10209	15844	15844					0.19022504144936647
KKERKIRQRKL	11	Unmodified	_KKERKIRQRKL_					0	0	0			REV__ENSG00000169981|ENST00000396056|ZNF35	REV__ENSG00000169981|ENST00000396056|ZNF35	MSMS	HCT116MG_D190212_S2	2	495.32305908203125	3	494.994959	1481.96305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.654	1	49.49	48.99	49.99	-0.16369								0	0	0	0.96121	1	19010	19010		0.45452	0.35968	1		+		16506	13272	10157	10210	15845	15845					0.24134540753152578
KKFFVDEKKM	10	Unmodified	_KKFFVDEKKM_					0	0	0		tr|U7STY4|U7STY4_FUSNURibose/galactose/methylgalactosideimportATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01610PE=3SV=1	tr|U7STY4|U7STY4_FUSNURibose/galactose/methylgalactosideimportATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01610PE=3SV=1	tr|U7STY4|U7STY4_FUSNURibose/galactose/methylgalactosideimportATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01610PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	650.3605346679688	2	650.360116	1298.70568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.689	1	43.315	42.815	43.815	-0.37433								0	0	0	0.96453	1	16068	16068		1.4819	0	1				16507	18458	10158	10211	15846	15846					0.06827462764954362
KKFKIVILILI	11	Unmodified	_KKFKIVILILI_					0	0	0		tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	tr|U7SPR8|U7SPR8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01875PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	664.4767456054688	2	664.475609	1326.93667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.755	1	16.755	16.255	17.255	0								0	0	0	0.96208	1	5660	5660		0	0	1				16508	18383	10159	10212	15847	15847					0.2862745880913735
KKFKKRKL	8	Unmodified	_KKFKKRKL_					0	0	0			REV__ENSG00000087269|ENST00000416614|NOP14	REV__ENSG00000087269|ENST00000416614|NOP14	MSMS	HCT116MG_D190212_S4	4	359.2121887207031	3	359.253599	1074.73897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.445	1	58.156	57.656	58.656	-0.28879								0	0	0	0.8837	1	21967	21967		0.40072	0	1		+		16509	10948	10160	10213	15848	15848					0.204588773898422
KKFLIFLSTF	10	Unmodified	_KKFLIFLSTF_					0	0	0		tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	415.2540283203125	3	415.253154	1242.73763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.024	1	52.024	51.524	52.524	0								0	0	0	0.96377	1	19888	19888		0.69767	0.24315	1				16510	18306	10161	10214	15849	15849					0.12597198510411545
KKFLLSLW	8	Unmodified	_KKFLLSLW_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-3|HPSE	REV__nc|ENSG00000173083|Q9Y251-3|HPSE	MSMS	HCT116MG_D190212_S4	4	517.8251953125	2	517.823495	1033.63244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.751	1	51.401	50.901	51.901	-0.35028								0	0	0	0.8837	1	19270	19270		2.5775	0	1		+		16511	13416	10162	10215	15850	15850					0.1169670210467757
KKFRKWLI	8	Unmodified	_KKFRKWLI_					0	0	0			REV__TRIM43|p.K150Rfs*29|2|0.18|ENSG00000144015|chr2:95595083-95595083|A/-|frameshift_variant	REV__TRIM43|p.K150Rfs*29|2|0.18|ENSG00000144015|chr2:95595083-95595083|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	559.8661499023438	2	559.863486	1117.71242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.312	1	58.312	57.812	58.812	0								0	0	0	0.8837	1	22459	22459		2.5775	1.0956	1		+		16512	18015	10163	10216	15851	15851					0.15827188498519718
KKFYFGEFF	9	Unmodified	_KKFYFGEFF_					0	0	0			REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	606.6273193359375	2	606.808042	1211.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.712	1	21.712	21.212	22.212	0								0	0	0	0.76902	1	7652	7652		4.3292	1.0479	1		+		16513	17832	10164	10217	15852	15852					0.00419503999751214
KKGAARRA	8	Unmodified	_KKGAARRA_					0	0	0		EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant	EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant	EPS8L2|p.V669Gfs*33|1|0.13|ENSG00000177106|chr11:726690-726690|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	429.0884094238281	2	429.275035	856.535518	0.0073749	3.1658E-06	-0.31081	-0.00013343	-0.30344	-0.00013026	429.274894280371	56.557	0.67023	56.557	56.119	56.789	0					16	12	2	0	0	0	0.33585	1	21784	21784		0.69038	0.69038	1	5965200			16514	9139	10165	10218	15853	15853					0.1015115266822022
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-MSMS	HCT116MG_D190212_S1	1	631.3535766601562	1	631.3522	630.344923	-0.075378	-4.759E-05	1.4923	0.00094216	1.4169	0.00089457	631.3531071491674	38.41	0.31298	38.41	38.227	38.54	0					7	5	2	0	0	0	0.88026	1	14389	14389		0	0	1	12043000			16515	6287	10166	10219	15854	15854					0.014964462861485117
KKGCTGVI	8	Unmodified	_KKGCTGVI_					0	0	0		nc|ENSG00000198130|Q6NVY1-2|HIBCH;ENSG00000198130|ENST00000359678|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	MSMS	HCT116MG_D190212_S2	2	403.2320251464844	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.324	1	14.012	13.512	14.512	-0.31202								0	0	0	0.8837	1	4680	4680		5.7604	0.52976	1				16516	6207	10167	10220	15855	15855					0.042710748252034136
KKGKAKKA	8	Unmodified	_KKGKAKKA_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000253797|ENST00000521776|UTP14C;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MULTI-MSMS	HCT116MG_D190212_S1	1	858.5864868164062	1	858.588348	857.581071	0.64496	0.00055376	-0.20636	-0.00017718	0.4386	0.00037658	858.5856289853866	58.731	1.0628	58.731	58.413	59.475	0					48	33	3	0	0	0	0.88026	2	22719	22719;22829		0	0	1	17089000			16517	4296	10168	10221	15856;15857	15856					0.1465837813059352
KKGKAKKA	8	Unmodified	_KKGKAKKA_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000253797|ENST00000521776|UTP14C;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MULTI-MSMS	HCT116MG_D190212_S2	2	858.5872192382812	1	858.588348	857.581071	0.80792	0.00069367	-0.0069864	-5.9985E-06	0.80093	0.00068767	858.5860928556507	58.773	0.90466	58.608	58.1	59.005	-0.1653					44	18	3	0	0	0	0.88026	1	22738	22738		0	0	1	19543000			16518	4296	10168	10221	15858	15858					0.1465837813059352
KKGKDGEYEE	10	Unmodified	_KKGKDGEYEE_					0	0	0		ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	MSMS	HCT116MG_D190212_S1	1	591.8723754882812	2	591.785492	1181.55643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.377	1	24.377	23.877	24.877	0								0	0	0	0.90892	1	8724	8724		13.906	1.6654	1				16519	2265	10169	10222	15859	15859					-0.027083913240858237
KKGSPTQK	8	Unmodified	_KKGSPTQK_					0	0	0			REV__ENST00000474216.5_1_1:11126777-11137033:-|nuORF	REV__ENST00000474216.5_1_1:11126777-11137033:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	437.260986328125	2	437.261259	872.507966	0.020984	9.1754E-06	-0.057402	-2.51E-05	-0.036418	-1.5924E-05	437.26117989155654	23.706	0.20922	23.706	23.575	23.784	0					8	3	3	0	0	0	0.19352	1	8463	8463		74.929	3.7954	1	18551000	+		16520	13362	10170	10223	15860	15860					0.0666120461733044
KKGSPTQK	8	Unmodified	_KKGSPTQK_					0	0	0			REV__ENST00000474216.5_1_1:11126777-11137033:-|nuORF	REV__ENST00000474216.5_1_1:11126777-11137033:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	437.261259	872.507966	0.020984	9.1754E-06	-0.057402	-2.51E-05	-0.036418	-1.5924E-05	437.26117989155654	23.706	0.20922	23.706	23.575	23.784	0	0	0	NaN	74.929	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18551000	+		16521	13362	10170	10223							0.0666120461733044
KKIDKKLYSLR	11	Unmodified	_KKIDKKLYSLR_					0	0	0		tr|U7T5L0|U7T5L0_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00156PE=4SV=1	tr|U7T5L0|U7T5L0_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00156PE=4SV=1	tr|U7T5L0|U7T5L0_FUSNUAAA-ATPase-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00156PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	696.4375	2	696.440286	1390.86602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.265	1	61.005	60.505	61.505	-0.2602								0	0	0	0.9598	1	23107	23107		1.1933	0.84271	1				16522	18631	10171	10224	15861	15861					0.18622133753501657
KKIFFRIQLFY	11	Unmodified	_KKIFFRIQLFY_					0	0	0		ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant	ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant	ZFC3H1|p.E1034Dfs*26|1|0.04|ENSG00000133858|chr12:71632230-71632231|-/AATAAAAATACTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	503.3061218261719	3	501.634257	1501.88094	0.48601	0.0002438	0.33275	0.00016692	0.81876	0.00041072	501.6343759695356	54.26	5.1376	54.26	51.704	56.841	0					249	99	6	0	0	0	0.74191	1	20059	20059		0.40827	0.40827	1	998670000			16523	18711	10172	10225	15862	15862					0.15007625621501575
KKILSKFY	8	Unmodified	_KKILSKFY_					0	0	0		tr|U7SMF0|U7SMF0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01964PE=4SV=1	tr|U7SMF0|U7SMF0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01964PE=4SV=1	tr|U7SMF0|U7SMF0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01964PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	513.82177734375	2	513.820953	1025.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.323	1	40.022	39.522	40.522	-0.30161								0	0	0	0.8837	1	14966	14966		5.7604	0.52976	1				16524	18351	10173	10226	15863	15863					0.11556398242055366
KKITKIIKK	9	Unmodified	_KKITKIIKK_					0	0	0		tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	367.2699279785156	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.349	1	30.979	30.479	31.479	-0.37026								0	0	0	0.77019	1	11374	11374		0.23584	0	1				16525	18358	10174	10227	15864	15864					0.23980897501269283
KKIVIYRKP	9	Unmodified	_KKIVIYRKP_					0	0	0			REV__tr|U7T2K7|U7T2K7_FUSNUSpoIIIJ-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00740PE=4SV=1	REV__tr|U7T2K7|U7T2K7_FUSNUSpoIIIJ-associatedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00740PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	572.8819580078125	2	572.881876	1143.7492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.493	1	33.203	32.703	33.703	-0.29013								0	0	0	0.76967	1	12294	12294		2.0598	0	1		+		16526	17925	10175	10228	15865	15865					0.18307440324383606
KKIVTALE	8	Unmodified	_KKIVTALE_					0	0	0			REV__ENSG00000079805|ENST00000389253|DNM2	REV__ENSG00000079805|ENST00000389253|DNM2	MSMS	HCT116MG_D190212_S1	1	451.2880859375	2	451.289485	900.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.958	1	56.958	56.458	57.458	0								0	0	0	0.8837	1	21908	21908		2.3027	0	1		+		16527	10397	10176	10229	15866	15866					0.11015832453983876
KKKALISTLH	10	Unmodified	_KKKALISTLH_					0	0	0			REV__UBN1|p.R716Gfs*129|1|0.3|ENSG00000118900|chr16:4874551-4874551|A/-|frameshift_variant	REV__UBN1|p.R716Gfs*129|1|0.3|ENSG00000118900|chr16:4874551-4874551|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	570.227294921875	2	569.868966	1137.72338	0.46356	0.00026417	0.26856	0.00015304	0.73211	0.00041721	569.8689007044434	59.753	0.94623	59.593	59.312	60.258	-0.16012					32	18	3	0	0	0	0.31174	1	23062	23062		0.40072	0	1	18937000	+		16528	11647	10177	10230	15867	15867					0.1600254608213163
KKKFKLKII	9	Unmodified	_KKKFKLKII_					0	0	0		tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	573.2426147460938	2	573.410269	1144.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.824	1	13.899	13.399	14.399	0.074899								0	0	0	0.7701	1	4410	4410		0.52476	0.52476	1				16529	18623	10178	10231	15868	15868					0.23937487880948538
KKKFLRSLHVK	11	Unmodified	_KKKFLRSLHVK_					0	0	0		ENST00000381227.5_1_4:57888364-57889501:+|nuORF	ENST00000381227.5_1_4:57888364-57889501:+|nuORF	ENST00000381227.5_1_4:57888364-57889501:+|nuORF	MSMS	HCT116MG_D190212_S2	2	692.4507446289062	2	692.450988	1382.88742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.952	1	60.803	60.303	61.303	-0.14852								0	0	0	0.9598	1	23601	23601		1.1933	0.79263	1				16530	7575	10179	10232	15869	15869					0.21129563572844745
KKKHKRKTKLL	11	Unmodified	_KKKHKRKTKLL_					0	0	0			REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant	REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	704.4873046875	2	704.485363	1406.95617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.137	1	59.865	59.365	60.365	-0.27156								0	0	0	0.96149	1	22650	22650		0.30703	0	1		+		16531	13493	10180	10233	15870	15870					0.2689722787260962
KKKHLVAKTY	10	Unmodified	_KKKHLVAKTY_					0	0	0		ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	MSMS	HCT116MG_D190212_S2	2	608.4751586914062	2	608.38224	1214.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.794	1	33.601	33.101	34.101	-0.19297								0	0	0	0.95351	1	12552	12552		3.9444	0.3479	1				16532	6317	10181	10234	15871	15871					0.15114234973475504
KKKHLYLL	8	Unmodified	_KKKHLYLL_					0	0	0			REV__THAP5|p.F275Lfs*37|1|0.13|ENSG00000177683|chr7:108564554-108564554|A/-|frameshift_variant	REV__THAP5|p.F275Lfs*37|1|0.13|ENSG00000177683|chr7:108564554-108564554|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	521.4207153320312	2	521.84222	1041.66989	0.29819	0.00015561	-2.8672	-0.0014962	-2.569	-0.0013406	521.8400364435576	60.774	0.35749	60.774	60.595	60.952	0					11	6	2	0	0	0	0.33409	1	23490	23490		2.5775	0	1	22076000	+		16533	17632	10182	10235	15872	15872					0.15071793370270825
KKKILLFQLRR	11	Unmodified	_KKKILLFQLRR_					0	0	0		nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	MSMS	HCT116MG_D190212_S2	2	722.326171875	2	721.987738	1441.96092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.41	1	44.325	43.825	44.825	-0.084797								0	0	0	0.96149	1	16865	16865		0.30703	0.03801	1				16534	9570	10183	10236	15873	15873					0.2576211201535443
KKKKAMTV	8	Unmodified	_KKKKAMTV_					0	0	0		ENSG00000186280|ENST00000335080|KDM4D	ENSG00000186280|ENST00000335080|KDM4D	ENSG00000186280|ENST00000335080|KDM4D	MSMS	HCT116MG_D190212_S3	3	467.3013000488281	2	467.29933	932.584108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.308	1	53.004	52.504	53.504	-0.30305								0	0	0	0.8837	1	20173	20173		0.79363	0	1				16535	5876	10184	10237	15874	15874					0.11511885193112903
KKKKDKKKKR	10	Unmodified	_KKKKDKKKKR_					0	0	0		NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant	NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant	NRDE2|p.E85D|1|0.23|ENSG00000119720|chr14:90316730-90316730|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	657.9581909179688	2	657.956438	1313.89832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.023	1	49.708	49.208	50.208	-0.31525								0	0	0	0.96937	1	18852	18852		0.40072	0.050084	1				16536	9705	10185	10238	15875	15875					0.253929659471396
KKKKERKSSKG	11	Unmodified	_KKKKERKSSKG_					0	0	0			REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant	REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	652.4121704101562	2	652.41206	1302.80957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.299	1	50.127	49.627	50.627	-0.1719								0	0	0	0.95686	1	19275	19275		2.7352	0.23671	1		+		16537	13637	10186	10239	15876	15876					0.17027505916826158
KKKKHKKPLII	11	Unmodified	_KKKKHKKPLII_					0	0	0			REV__ENSG00000130826|ENST00000369550|DKC1	REV__ENSG00000130826|ENST00000369550|DKC1	MSMS	HCT116MG_D190212_S2	2	680.9815673828125	2	680.979382	1359.94421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.759	1	43.68	43.18	44.18	-0.078373								0	0	0	0.96208	1	16601	16601		0	0	1		+		16538	11941	10187	10240	15877	15877					0.2786361112941904
KKKKIAQRLPE	11	Unmodified	_KKKKIAQRLPE_					0	0	0			REV__KBTBD2-CYFIP1|1|fusion	REV__KBTBD2-CYFIP1|1|fusion	MSMS	HCT116MG_D190212_S4	4	669.9353637695312	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.292	1	50.942	50.442	51.442	-0.35028								0	0	0	0.95686	1	19085	19085		2.7352	1.2533	1		+		16539	14447	10188	10241	15878	15878					0.19529266956328684
KKKKKIRLKI	10	Unmodified	_KKKKKIRLKI_					0	0	0		ENST00000466133.1_1_3:159819159-159819552:+|nuORF	ENST00000466133.1_1_3:159819159-159819552:+|nuORF	ENST00000466133.1_1_3:159819159-159819552:+|nuORF	MSMS	HCT116MG_D190212_S4	4	641.9749145507812	2	641.974099	1281.93365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.771	1	12.602	12.102	13.102	-0.16903								0	0	0	0.97054	1	3978	3978		0.40072	0.40072	1				16540	8104	10189	10242	15879	15879					0.30395628474980185
KKKKKKEPL	9	Unmodified	_KKKKKKEPL_					0	0	0			REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant	REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	376.259521484375	3	376.260531	1125.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.759	1	55.447	54.947	55.947	-0.312								0	0	0	0.76995	1	20887	20887		1.0715	0.80244	1		+		16541	11197	10190	10243	15880	15880					0.2019142297883718
KKKKKKEPL	9	Unmodified	_KKKKKKEPL_					0	0	0			REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant	REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	376.3057556152344	3	376.260531	1125.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.082	1	58.8	58.3	59.3	-0.28144								0	0	0	0.77019	1	22224	22224		0.23584	0.11298	1		+		16542	11197	10190	10243	15881	15881					0.2019142297883718
KKKKKKFGF	9	Unmodified	_KKKKKKFGF_					0	0	0			REV__ENST00000542527.6_1_16:22092304-22092481:+|nuORF	REV__ENST00000542527.6_1_16:22092304-22092481:+|nuORF	MSMS	HCT116MG_D190212_S2	2	569.7035522460938	2	569.876594	1137.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.349	1	26.996	26.496	27.496	-0.35254								0	0	0	0.77008	1	9930	9930		0.6015	0.076735	1		+		16543	16379	10191	10244	15882	15882					0.1752745766998487
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.02943	1	0.02943	-0.47057	0.52943	0								0	0	0	0.97116	1	11	11		0	0	1		+		16544	12047	10192	10245	15883	15883					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5702	1	1.5702	1.0702	2.0702	0								0	0	0	0.97116	1	466	466		0	0	1		+		16545	12047	10192	10245	15884	15884					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6141	1	3.6141	3.1141	4.1141	0								0	0	0	0.97116	1	1079	1079		0	0	1		+		16546	12047	10192	10245	15885	15885					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1612	1	6.1612	5.6612	6.6612	0								0	0	0	0.97116	1	1855	1855		0	0	1		+		16547	12047	10192	10245	15886	15886					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.219	1	15.219	14.719	15.719	0								0	0	0	0.97116	1	5040	5040		0	0	1		+		16548	12047	10192	10245	15887	15887					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.782	1	15.782	15.282	16.282	0								0	0	0	0.97116	1	5267	5267		0	0	1		+		16549	12047	10192	10245	15888	15888					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2840576171875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.362	1	16.362	15.862	16.862	0								0	0	0	0.97116	1	5501	5501		0	0	1		+		16550	12047	10192	10245	15889	15889					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.926	1	16.926	16.426	17.426	0								0	0	0	0.97116	1	5728	5728		0	0	1		+		16551	12047	10192	10245	15890	15890					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.28436279296875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.924	1	17.924	17.424	18.424	0								0	0	0	0.97116	1	6130	6130		0	0	1		+		16552	12047	10192	10245	15891	15891					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.893	1	20.893	20.393	21.393	0								0	0	0	0.97116	1	7326	7326		0	0	1		+		16553	12047	10192	10245	15892	15892					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.594	1	21.594	21.094	22.094	0								0	0	0	0.97116	1	7604	7604		0	0	1		+		16554	12047	10192	10245	15893	15893					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.17	1	22.17	21.67	22.67	0								0	0	0	0.97116	1	7836	7836		0	0	1		+		16555	12047	10192	10245	15894	15894					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.28411865234375	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.896	1	22.896	22.396	23.396	0								0	0	0	0.97116	1	8128	8128		0	0	1		+		16556	12047	10192	10245	15895	15895					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2840881347656	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.152	1	25.152	24.652	25.652	0								0	0	0	0.97116	1	9035	9035		0	0	1		+		16557	12047	10192	10245	15896	15896					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.28436279296875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.84	1	25.84	25.34	26.34	0								0	0	0	0.97116	1	9312	9312		0	0	1		+		16558	12047	10192	10245	15897	15897					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2838134765625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.185	1	27.185	26.685	27.685	0								0	0	0	0.97116	1	9854	9854		0	0	1		+		16559	12047	10192	10245	15898	15898					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.805	1	27.805	27.305	28.305	0								0	0	0	0.97116	1	10105	10105		0	0	1		+		16560	12047	10192	10245	15899	15899					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.52789306640625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.704	1	28.704	28.204	29.204	0								0	0	0	0.97116	1	10464	10464		0	0	1		+		16561	12047	10192	10245	15900	15900					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2840576171875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.896	1	29.896	29.396	30.396	0								0	0	0	0.97116	1	10944	10944		0	0	1		+		16562	12047	10192	10245	15901	15901					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.283935546875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.515	1	30.515	30.015	31.015	0								0	0	0	0.97116	1	11195	11195		0	0	1		+		16563	12047	10192	10245	15902	15902					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.069	1	32.069	31.569	32.569	0								0	0	0	0.97116	1	11821	11821		0	0	1		+		16564	12047	10192	10245	15903	15903					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2794189453125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.576	1	56.576	56.076	57.076	0								0	0	0	0.97116	1	21753	21753		0	0	1		+		16565	12047	10192	10245	15904	15904					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.582	1	57.582	57.082	58.082	0								0	0	0	0.97116	1	22161	22161		0	0	1		+		16566	12047	10192	10245	15905	15905					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2165222167969	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.85	1	58.85	58.35	59.35	0								0	0	0	0.97116	1	22681	22681		0	0	1		+		16567	12047	10192	10245	15906	15906					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.2838439941406	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.311	1	59.311	58.811	59.811	0								0	0	0	0.97116	1	22858	22858		0	0	1		+		16568	12047	10192	10245	15907	15907					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	391.284423828125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.985	1	59.985	59.485	60.485	0								0	0	0	0.97116	1	23116	23116		0	0	1		+		16569	12047	10192	10245	15908	15908					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.031935	1	0.027995	-0.472	0.528	-0.0039395								0	0	0	0.97116	1	12	12		0	0	1		+		16570	12047	10192	10245	15909	15909					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.267	1	10.002	9.5019	10.502	-0.26472								0	0	0	0.97116	1	3238	3238		0	0	1		+		16571	12047	10192	10245	15910	15910					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.334	1	11.052	10.552	11.552	-0.28186								0	0	0	0.97116	1	3645	3645		0	0	1		+		16572	12047	10192	10245	15911	15911					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.2842712402344	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.862	1	11.572	11.072	12.072	-0.28953								0	0	0	0.97116	1	3847	3847		0	0	1		+		16573	12047	10192	10245	15912	15912					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.437	1	13.132	12.632	13.632	-0.30453								0	0	0	0.97116	1	4393	4393		0	0	1		+		16574	12047	10192	10245	15913	15913					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.94	1	13.628	13.128	14.128	-0.31202								0	0	0	0.97116	1	4554	4554		0	0	1		+		16575	12047	10192	10245	15914	15914					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.498	1	14.179	13.679	14.679	-0.31952								0	0	0	0.97116	1	4750	4750		0	0	1		+		16576	12047	10192	10245	15915	15915					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.064	1	14.737	14.237	15.237	-0.32684								0	0	0	0.97116	1	4978	4978		0	0	1		+		16577	12047	10192	10245	15916	15916					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.2842712402344	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.818	1	16.476	15.976	16.976	-0.34183								0	0	0	0.97116	1	5685	5685		0	0	1		+		16578	12047	10192	10245	15917	15917					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.582	1	17.23	16.73	17.73	-0.352								0	0	0	0.97116	1	5992	5992		0	0	1		+		16579	12047	10192	10245	15918	15918					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.2840576171875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.11	1	19.735	19.235	20.235	-0.37503								0	0	0	0.97116	1	7012	7012		0	0	1		+		16580	12047	10192	10245	15919	15919					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S2	2	391.6875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.684	1	24.304	23.804	24.804	-0.38003								0	0	0	0.97116	1	8856	8856		0	0	1		+		16581	12047	10192	10245	15920	15920					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.031811	1	0.092716	-0.40728	0.59272	0.060905								0	0	0	0.97116	1	12	12		0	0	1		+		16582	12047	10192	10245	15921	15921					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5974	1	2.6527	2.1527	3.1527	0.055284								0	0	0	0.97116	1	788	788		0	0	1		+		16583	12047	10192	10245	15922	15922					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.629	1	4.6515	4.1515	5.1515	0.022513								0	0	0	0.97116	1	1390	1390		0	0	1		+		16584	12047	10192	10245	15923	15923					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1557	1	6.17	5.67	6.67	0.01438								0	0	0	0.97116	1	1858	1858		0	0	1		+		16585	12047	10192	10245	15924	15924					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6879	1	7.7018	7.2018	8.2018	0.013901								0	0	0	0.97116	1	2319	2319		0	0	1		+		16586	12047	10192	10245	15925	15925					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1922	1	8.2087	7.7087	8.7087	0.016533								0	0	0	0.97116	1	2471	2471		0	0	1		+		16587	12047	10192	10245	15926	15926					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.278	1	11.325	10.825	11.825	0.04739								0	0	0	0.97116	1	3455	3455		0	0	1		+		16588	12047	10192	10245	15927	15927					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.794	1	11.849	11.349	12.349	0.055045								0	0	0	0.97116	1	3636	3636		0	0	1		+		16589	12047	10192	10245	15928	15928					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.48	1	14.56	14.06	15.06	0.079683								0	0	0	0.97116	1	4664	4664		0	0	1		+		16590	12047	10192	10245	15929	15929					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.043	1	15.126	14.626	15.626	0.083271								0	0	0	0.97116	1	4891	4891		0	0	1		+		16591	12047	10192	10245	15930	15930					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.618	1	15.703	15.203	16.203	0.085423								0	0	0	0.97116	1	5123	5123		0	0	1		+		16592	12047	10192	10245	15931	15931					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.767	1	16.851	16.351	17.351	0.084467								0	0	0	0.97116	1	5587	5587		0	0	1		+		16593	12047	10192	10245	15932	15932					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.909	1	17.989	17.489	18.489	0.079933								0	0	0	0.97116	1	6048	6048		0	0	1		+		16594	12047	10192	10245	15933	15933					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.28436279296875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.93	1	21.931	21.431	22.431	0.00074577								0	0	0	0.97116	1	7667	7667		0	0	1		+		16595	12047	10192	10245	15934	15934					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.629	1	24.545	24.045	25.045	-0.083694								0	0	0	0.97116	1	8755	8755		0	0	1		+		16596	12047	10192	10245	15935	15935					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.204	1	25.098	24.598	25.598	-0.10618								0	0	0	0.97116	1	8987	8987		0	0	1		+		16597	12047	10192	10245	15936	15936					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.776	1	25.648	25.148	26.148	-0.12795								0	0	0	0.97116	1	9218	9218		0	0	1		+		16598	12047	10192	10245	15937	15937					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.28436279296875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.027	1	26.858	26.358	27.358	-0.16933								0	0	0	0.97116	1	9722	9722		0	0	1		+		16599	12047	10192	10245	15938	15938					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2847900390625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.602	1	27.413	26.913	27.913	-0.18847								0	0	0	0.97116	1	9954	9954		0	0	1		+		16600	12047	10192	10245	15939	15939					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2842712402344	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.193	1	27.987	27.487	28.487	-0.20593								0	0	0	0.97116	1	10193	10193		0	0	1		+		16601	12047	10192	10245	15940	15940					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2843933105469	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.781	1	28.559	28.059	29.059	-0.22195								0	0	0	0.97116	1	10429	10429		0	0	1		+		16602	12047	10192	10245	15941	15941					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2839660644531	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.368	1	29.146	28.646	29.646	-0.22195								0	0	0	0.97116	1	10666	10666		0	0	1		+		16603	12047	10192	10245	15942	15942					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2835998535156	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.83	1	30.569	30.069	31.069	-0.26071								0	0	0	0.97116	1	11241	11241		0	0	1		+		16604	12047	10192	10245	15943	15943					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.44	1	31.17	30.67	31.67	-0.27028								0	0	0	0.97116	1	11486	11486		0	0	1		+		16605	12047	10192	10245	15944	15944					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.28436279296875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.64	1	32.354	31.854	32.854	-0.28511								0	0	0	0.97116	1	11970	11970		0	0	1		+		16606	12047	10192	10245	15945	15945					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2845153808594	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.295	1	33.005	32.505	33.505	-0.29013								0	0	0	0.97116	1	12214	12214		0	0	1		+		16607	12047	10192	10245	15946	15946					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.889	1	33.595	33.095	34.095	-0.29419								0	0	0	0.97116	1	12454	12454		0	0	1		+		16608	12047	10192	10245	15947	15947					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.471	1	34.176	33.676	34.676	-0.29527								0	0	0	0.97116	1	12689	12689		0	0	1		+		16609	12047	10192	10245	15948	15948					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2843017578125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.052	1	34.754	34.254	35.254	-0.29707								0	0	0	0.97116	1	12924	12924		0	0	1		+		16610	12047	10192	10245	15949	15949					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2843017578125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.078	1	37.777	37.277	38.277	-0.30137								0	0	0	0.97116	1	14093	14093		0	0	1		+		16611	12047	10192	10245	15950	15950					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2843017578125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.355	1	39.054	38.554	39.554	-0.30137								0	0	0	0.97116	1	14607	14607		0	0	1		+		16612	12047	10192	10245	15951	15951					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2840576171875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.212	1	39.91	39.41	40.41	-0.30137								0	0	0	0.97116	1	14921	14921		0	0	1		+		16613	12047	10192	10245	15952	15952					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S3	3	391.2842712402344	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.82	1	40.519	40.019	41.019	-0.30161								0	0	0	0.97116	1	15166	15166		0	0	1		+		16614	12047	10192	10245	15953	15953					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.031751	1	-0.23281	-0.73281	0.26719	-0.26456								0	0	0	0.97116	1	12	12		0	0	1		+		16615	12047	10192	10245	15954	15954					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.55253	1	0.28797	-0.21203	0.78797	-0.26456								0	0	0	0.97116	1	173	173		0	0	1		+		16616	12047	10192	10245	15955	15955					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.304	1	12.135	11.635	12.635	-0.16903								0	0	0	0.97116	1	3813	3813		0	0	1		+		16617	12047	10192	10245	15956	15956					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.812	1	12.647	12.147	13.147	-0.16496								0	0	0	0.97116	1	3992	3992		0	0	1		+		16618	12047	10192	10245	15957	15957					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.33	1	13.165	12.665	13.665	-0.16496								0	0	0	0.97116	1	4176	4176		0	0	1		+		16619	12047	10192	10245	15958	15958					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.839	1	13.676	13.176	14.176	-0.16233								0	0	0	0.97116	1	4357	4357		0	0	1		+		16620	12047	10192	10245	15959	15959					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.372	1	14.211	13.711	14.711	-0.16089								0	0	0	0.97116	1	4546	4546		0	0	1		+		16621	12047	10192	10245	15960	15960					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2843017578125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.967	1	14.806	14.306	15.306	-0.16089								0	0	0	0.97116	1	4786	4786		0	0	1		+		16622	12047	10192	10245	15961	15961					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.545	1	15.384	14.884	15.884	-0.16173								0	0	0	0.97116	1	5020	5020		0	0	1		+		16623	12047	10192	10245	15962	15962					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.112	1	15.948	15.448	16.448	-0.16364								0	0	0	0.97116	1	5248	5248		0	0	1		+		16624	12047	10192	10245	15963	15963					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.701	1	16.535	16.035	17.035	-0.16664								0	0	0	0.97116	1	5486	5486		0	0	1		+		16625	12047	10192	10245	15964	15964					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.27	1	17.1	16.6	17.6	-0.17047								0	0	0	0.97116	1	5716	5716		0	0	1		+		16626	12047	10192	10245	15965	15965					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.846	1	17.671	17.171	18.171	-0.17501								0	0	0	0.97116	1	5949	5949		0	0	1		+		16627	12047	10192	10245	15966	15966					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.421	1	18.24	17.74	18.74	-0.18052								0	0	0	0.97116	1	6181	6181		0	0	1		+		16628	12047	10192	10245	15967	15967					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.131	1	22.893	22.393	23.393	-0.2385								0	0	0	0.97116	1	8083	8083		0	0	1		+		16629	12047	10192	10245	15968	15968					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2842712402344	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.026	1	32.644	32.144	33.144	-0.38223								0	0	0	0.97116	1	12052	12052		0	0	1		+		16630	12047	10192	10245	15969	15969					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28472900390625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.118	1	37.735	37.235	38.235	-0.38283								0	0	0	0.97116	1	13958	13958		0	0	1		+		16631	12047	10192	10245	15970	15970					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.699	1	38.317	37.817	38.817	-0.38163								0	0	0	0.97116	1	14192	14192		0	0	1		+		16632	12047	10192	10245	15971	15971					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.426	1	39.045	38.545	39.545	-0.38055								0	0	0	0.97116	1	14485	14485		0	0	1		+		16633	12047	10192	10245	15972	15972					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2839660644531	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.482	1	43.107	42.607	43.607	-0.37433								0	0	0	0.97116	1	15984	15984		0	0	1		+		16634	12047	10192	10245	15973	15973					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.28411865234375	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.094	1	43.72	43.22	44.22	-0.37373								0	0	0	0.97116	1	16232	16232		0	0	1		+		16635	12047	10192	10245	15974	15974					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2845458984375	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.66	1	47.291	46.791	47.791	-0.36907								0	0	0	0.97116	1	17626	17626		0	0	1		+		16636	12047	10192	10245	15975	15975					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.244	1	47.877	47.377	48.377	-0.36728								0	0	0	0.97116	1	17861	17861		0	0	1		+		16637	12047	10192	10245	15976	15976					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.027	1	48.662	48.162	49.162	-0.365								0	0	0	0.97116	1	18171	18171		0	0	1		+		16638	12047	10192	10245	15977	15977					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2834777832031	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.831	1	49.469	48.969	49.969	-0.36213								0	0	0	0.97116	1	18496	18496		0	0	1		+		16639	12047	10192	10245	15978	15978					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.283935546875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.396	1	50.037	49.537	50.537	-0.35878								0	0	0	0.97116	1	18722	18722		0	0	1		+		16640	12047	10192	10245	15979	15979					0.25026506998415243
KKKKKKKGKA	10	Unmodified	_KKKKKKKGKA_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S4	4	391.2841796875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.032	1	50.677	50.177	51.177	-0.35483								0	0	0	0.97116	1	18980	18980		0	0	1		+		16641	12047	10192	10245	15980	15980					0.25026506998415243
KKKKKKKGKLP	11	Unmodified	_KKKKKKKGKLP_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MSMS	HCT116MG_D190212_S2	2	655.9719848632812	2	655.971557	1309.92856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.851	1	37.758	37.258	38.258	-0.09301								0	0	0	0.96141	1	14202	14202		0.35063	0.081612	1				16642	5347	10193	10246	15981	15981					0.2859932461237804
KKKKKKKK	8	Unmodified	_KKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;TRPM1|p.T760Pfs*110|2|0.19|ENSG00000134160|chr15:31038140-31038140|G/-|frameshift_variant;TRPM1|p.Q811Tfs*12|1|0.28|ENSG00000134160|chr15:31037785-31037786|-/T|frameshift_variant;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;ENSG00000072657|ENST00000261180|TRHDE;nc|ENSG00000099715|Q9BZA8|PCDH11Y;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;ENST00000466684.5_1_5:889867-892639:-|nuORF;ENST00000487688.1_1_5:889867-892539:-|nuORF;ENST00000433510.2_1_17:46713876-46724046:-|nuORF;ENST00000359660.9_1_5:107195069-107195318:-|nuORF;ENST00000433510.2_1_17:46713761-46713989:-|nuORF;L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|2|1|sense;ENST00000393214.2_1_X:73596212-73596416:-|nuORF;ENST00000393214.2_1_X:73596333-73596534:-|nuORF;ENST00000368679.8_1_10:127702855-127703017:-|nuORF;ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF;OTOF|p.E1304K|1|0.19|ENSG00000115155|chr2:26470706-26470706|C/T|missense_variant;ENSG00000028310|ENST00000467963|BRD9;KNOP1|p.K217Nfs*23|2|0.19|ENSG00000103550|chr16:19714384-19714385|TT/-|frameshift_variant;ENSG00000055044|ENST00000264279|NOP58;LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;TRHDE|p.F209Sfs*9|1|0.45|ENSG00000072657|chr12:72273399-72273399|T/-|frameshift_variant;ENSG00000121766|ENST00000344147|ZCCHC17;nc|ENSG00000121766|Q9NP64-3|ZCCHC17;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;nc|ENSG00000121766|Q9NP64-2|ZCCHC17;KNOP1|p.K156Rfs*57|1|0.32|ENSG00000103550|chr16:19714569-19714569|T/-|frameshift_variant;ENST00000483173.5_3_5:889166-892639:-|nuORF;ENST00000495836.1_1_2:69771529-69870271:-|nuORF;KNOP1|p.A158Gfs*16|1|0.3|ENSG00000103550|chr16:19714568-19714569|-/T|frameshift_variant;ENST00000495265.5_1_5:889867-892820:-|nuORF;ENST00000340726.7_1_8:72273997-72274438:-|nuORF;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-3|METAP2;METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;SLU7|p.K507N|1|0.21|ENSG00000164609|chr5:160404500-160404500|C/A|missense_variant;ENSG00000181585|ENST00000643606|TMIE;ENST00000549136.1_1_12:95869884-95877058:+|nuORF;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|2|1|sense;ENST00000263464.7_1_11:102193472-102193544:+|nuORF;ENST00000433510.2_1_17:46713640-46724167:-|nuORF;ENSG00000130826|ENST00000369550|DKC1;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF;ENST00000367558.5_1_1:182569199-182569457:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1;ENSG00000125977|ENST00000374980|EIF2S2;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;nc|ENSG00000089335|Q9NR11|ZNF302;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204963|ENST00000525929|PCDHA7;ENSG00000081842|ENST00000529310|PCDHA6;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6;ENSG00000204965|ENST00000529859|PCDHA5;nc|ENSG00000204970|Q9Y5I3-2|PCDHA1;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000250120|ENST00000307360|PCDHA10;ENSG00000249158|ENST00000398640|PCDHA11;nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;ENSG00000255408|ENST00000522353|PCDHA3;ENSG00000239389|ENST00000289272|PCDHA13;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000204970|ENST00000504120|PCDHA1;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000248383|ENST00000253807|PCDHAC1;ENSG00000251664|ENST00000398631|PCDHA12;ENST00000263464.7_1_11:102193503-102193566:+|nuORF;ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENSG00000164609|ENST00000297151|SLU7;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant;nc|ENSG00000174720|Q4G0J3-3|LARP7;ENSG00000174720|ENST00000344442|LARP7;ENSG00000189134|ENST00000343684|NKAPL;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000560801.5_2_15:31320559-31354823:-|nuORF	nc|ENSG00000070814|Q13428-6|TCOF1;ENSG00000105849|ENST00000222567|POLR1F;nc|ENSG00000174780|O76094-2|SRP72;ENSG00000111142|ENST00000323666|METAP2;ENST00000433510.2_1_17:46713640-46724167:-|nuORF;ENSG00000130826|ENST00000369550|DKC1;REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000367558.5_1_1:182569199-182569457:-|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__ENST00000433510.2_1_17:46713761-46713989:-|nuORF;REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;ENSG00000125977|ENST00000374980|EIF2S2;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense;REV__ENSG00000183354|ENST00000399933|KIAA2026;ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000204970|ENST00000504120|PCDHA1;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000248383|ENST00000253807|PCDHAC1;ENSG00000251664|ENST00000398631|PCDHA12;REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF;REV__ENSG00000055044|ENST00000264279|NOP58;ENST00000263464.7_1_11:102193503-102193566:+|nuORF;REV__AluSx3_dup29941|chr19:41720501-41720799:-|1.5544935485926912|0.0583639242761596|4.74|481.0|9|3|sense;ENSG00000183354|ENST00000399933|KIAA2026;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;REV__ENSG00000130826|ENST00000369550|DKC1;REV__ENSG00000248383|ENST00000253807|PCDHAC1;ENST00000567998.5_1_16:28621482-28621938:-|nuORF;REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;REV__ENSG00000251664|ENST00000398631|PCDHA12;nc|ENSG00000145860|Q96MT1-4|RNF145;ENSG00000164609|ENST00000297151|SLU7;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000406961.5_1_2:24991338-24991476:+|nuORF;REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000174720|Q4G0J3-3|LARP7;ENSG00000189134|ENST00000343684|NKAPL;ENST00000340726.7_1_8:72274331-72274436:-|nuORF;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENST00000560801.5_2_15:31320559-31354823:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;REV__ENSG00000081842|ENST00000529310|PCDHA6;REV__ENSG00000105849|ENST00000222567|POLR1F;REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF;REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;REV__nc|ENSG00000127616|P51532-5|SMARCA4;REV__LARP7|p.T405Qfs*5|2|0.48|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant;REV__ENSG00000204965|ENST00000529859|PCDHA5;REV__ENSG00000243232|ENST00000289269|PCDHAC2;REV__ENST00000340726.7_1_8:72274331-72274436:-|nuORF;REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF;REV__ENST00000368679.8_1_10:127702855-127703017:-|nuORF;REV__ENST00000433510.2_1_17:46713640-46724167:-|nuORF;REV__nc|ENSG00000145860|Q96MT1-4|RNF145	ENSG00000127616|ENST00000344626|SMARCA4	MSMS	HCT116MG_D190212_S2	2	522.3450317382812	2	522.392411	1042.77027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.251	1	28.935	28.435	29.435	-0.31613								0	0	0	0.8837	1	10707	10707		0	0	1				16643	2974;5714;1245;11889;5347;11861;15902;2273;6360;12047;7251;7541;15247;15020;3995;4708;954;15000;9921;14361;16197;11197;11941;11423;6582;118;6557;6573;8517;10759;7339;117;13759;3109;6361;6362;14213;13493;7869;7391;11295;14967;11276;15125;10881;15135;8811;2040;7213;1903;5343;15598;2923;7718;2072;9490;14383;14378;8871;14371;15597;9931;6880;10642;6022;17156	10194	10247	15982	15982					0.2505945042391886
KKKKKKKKK	9	Unmodified	_KKKKKKKKK_					0	0	0		ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-3|METAP2;METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;SLU7|p.K507N|1|0.21|ENSG00000164609|chr5:160404500-160404500|C/A|missense_variant;ENSG00000181585|ENST00000643606|TMIE;ENST00000549136.1_1_12:95869884-95877058:+|nuORF;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|2|1|sense;ENST00000263464.7_1_11:102193472-102193544:+|nuORF;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;nc|ENSG00000089335|Q9NR11|ZNF302;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000164609|ENST00000297151|SLU7;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant;ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENSG00000111142|ENST00000323666|METAP2;ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;REV__ENSG00000183354|ENST00000399933|KIAA2026;REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF;ENSG00000183354|ENST00000399933|KIAA2026;AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense;ENSG00000164609|ENST00000297151|SLU7;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF;PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000344423.9_1_8:28205640-28205820:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense;REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;REV__nc|ENSG00000127616|P51532-5|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MSMS	HCT116MG_D190212_S3	3	586.4390258789062	2	586.439892	1170.86523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.104	1	37.803	37.303	38.303	-0.30137								0	0	0	0.77025	1	14104	14104		0	0	1				16644	2974;5714;11889;11861;15247;15020;7541;7251;3995;2273;15000;4708;954;9921;7339;13759;11423;118	10195	10248	15983	15983					0.28663383895104744
KKKKKKKKKK	10	Unmodified	_KKKKKKKKKK_					0	0	0		ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF	REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF	MSMS	HCT116MG_D190212_S2	2	434.3285217285156	3	433.994008	1298.96019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.138	1	10.856	10.356	11.356	-0.28186								0	0	0	0.97054	1	3573	3573		0.13989	0.13989	1				16645	15020;4708	10196	10249	15984	15984					0.3226731736626789
KKKKKKKKKK	10	Unmodified	_KKKKKKKKKK_					0	0	0		ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7;REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF	REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF	MSMS	HCT116MG_D190212_S3	3	433.99407958984375	3	433.994008	1298.96019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.579	1	10.619	10.119	11.119	0.039975								0	0	0	0.95511	1	3209	3209		3.5871	3.5871	1				16646	15020;4708	10196	10249	15985	15985					0.3226731736626789
KKKKKKKKKKK	11	Unmodified	_KKKKKKKKKKK_					0	0	0			REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF	REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF	MSMS	HCT116MG_D190212_S3	3	476.6927490234375	3	476.692329	1427.05516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.546	1	10.586	10.086	11.086	0.039975								0	0	0	0.95473	1	3198	3198		3.8459	3.8459	1		+		16647	15020	10197	10250	15986	15986					0.3587125083745377
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	HCT116MG_D190212_S2	2	703.4885864257812	2	703.490114	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.765	1	37.662	37.162	38.162	-0.10318								0	0	0	0.96208	1	14167	14167		0	0	1				16648	7251	10198	10251	15987	15987					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	HCT116MG_D190212_S4	4	469.32843017578125	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.209	1	11.028	10.528	11.528	-0.18135								0	0	0	0.96208	1	3458	3458		0	0	1				16649	7251	10198	10251	15988	15988					0.279389961581046
KKKKKKKKKSF	11	Unmodified	_KKKKKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	HCT116MG_D190212_S4	4	469.32891845703125	3	469.329168	1404.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.975	1	11.801	11.301	12.301	-0.17441								0	0	0	0.96208	1	3703	3703		0	0	1				16650	7251	10198	10251	15989	15989					0.279389961581046
KKKKKKKKLKD	11	Unmodified	_KKKKKKKKLKD_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MSMS	HCT116MG_D190212_S1	1	700.497314453125	2	700.495396	1398.97624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.978	1	49.978	49.478	50.478	0								0	0	0	0.96208	1	19058	19058		0	0	1				16651	5714	10199	10252	15990	15990					0.29270978812542126
KKKKKKKKLLC	11	Unmodified	_KKKKKKKKLLC_					0	0	0			REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense	REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense	MSMS	HCT116MG_D190212_S3	3	686.9835205078125	2	686.981067	1371.94758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.295	1	37.993	37.493	38.493	-0.30137								0	0	0	0.96149	1	14181	14181		0.30703	0	1		+		16652	9921	10200	10253	15991	15991					0.2764853791177302
KKKKKKKKLVF	11	Unmodified	_KKKKKKKKLVF_					0	0	0			REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S4	4	702.00439453125	2	702.002857	1401.99116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.31	1	36.926	36.426	37.426	-0.3839								0	0	0	0.96208	1	13687	13687		0	0	1		+		16653	16197	10201	10254	15992	15992					0.3062447068052734
KKKKKKKKQ	9	Unmodified	_KKKKKKKKQ_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	391.20147705078125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.236	1	21.236	20.736	21.736	0								0	0	0	0.76995	1	7461	7461		1.0715	0.91214	1				16654	11889;3995;10759	10202	10255	15993	15993					0.25026506998392506
KKKKKKKKQ	9	Unmodified	_KKKKKKKKQ_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.564	1	23.564	23.064	24.064	0								0	0	0	0.77019	1	8397	8397		0.23584	0.076522	1				16655	11889;3995;10759	10202	10255	15994	15994					0.25026506998392506
KKKKKKKKQ	9	Unmodified	_KKKKKKKKQ_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.515	1	24.515	24.015	25.015	0								0	0	0	0.77019	1	8779	8779		0.23584	0.076522	1				16656	11889;3995;10759	10202	10255	15995	15995					0.25026506998392506
KKKKKKKKQ	9	Unmodified	_KKKKKKKKQ_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.055	1	19.124	18.624	19.624	0.069159								0	0	0	0.77019	1	6510	6510		0.23584	0.076522	1				16657	11889;3995;10759	10202	10255	15996	15996					0.25026506998392506
KKKKKKKKQ	9	Unmodified	_KKKKKKKKQ_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.636	1	19.696	19.196	20.196	0.05983								0	0	0	0.77019	1	6745	6745		0.23584	0.076522	1				16658	11889;3995;10759	10202	10255	15997	15997					0.25026506998392506
KKKKKKKKQ	9	Unmodified	_KKKKKKKKQ_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	391.2843017578125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.67	1	38.369	37.869	38.869	-0.30137								0	0	0	0.77019	1	14333	14333		0.23584	0.23584	1				16659	11889;3995;10759	10202	10255	15998	15998					0.25026506998392506
KKKKKKKKQ	9	Unmodified	_KKKKKKKKQ_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	391.2842712402344	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.562	1	19.368	18.868	19.868	-0.19367								0	0	0	0.77019	1	6642	6642		0.23584	0.076522	1				16660	11889;3995;10759	10202	10255	15999	15999					0.25026506998392506
KKKKKKKKQ	9	Unmodified	_KKKKKKKKQ_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.117	1	19.922	19.422	20.422	-0.19438								0	0	0	0.77019	1	6866	6866		0.23584	0.076522	1				16661	11889;3995;10759	10202	10255	16000	16000					0.25026506998392506
KKKKKKKKQ	9	Unmodified	_KKKKKKKKQ_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__nc|ENSG00000070814|Q13428-2|TCOF1;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	391.2840270996094	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.402	1	22.174	21.674	22.674	-0.22777								0	0	0	0.77019	1	7790	7790		0.23584	0.23584	1				16662	11889;3995;10759	10202	10255	16001	16001					0.25026506998392506
KKKKKKKLA	9	Unmodified	_KKKKKKKLA_					0	0	0		AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense	AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense	AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense	MSMS	HCT116MG_D190212_S4	4	367.7565612792969	3	367.272771	1098.79648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.525	1	12.356	11.856	12.856	-0.16903								0	0	0	0.77025	1	3894	3894		0	0	1				16663	117	10203	10256	16002	16002					0.2510371959542681
KKKKKKKLARH	11	Unmodified	_KKKKKKKLARH_					0	0	0		AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense	AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense	AluSz6_dup3545|chr1:206928950-206929263:+|2.41730061421725|0.0414716037207735|5.87|423.0|3|1|sense	MSMS	HCT116MG_D190212_S1	1	696.85546875	2	696.98553	1391.95651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.44	1	23.44	22.94	23.94	0								0	0	0	0.95954	1	8348	8348		1.3295	1.3295	1				16664	117	10204	10257	16003	16003					0.2762064759244822
KKKKKKKLL	9	Unmodified	_KKKKKKKLL_					0	0	0			REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense	REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S3	3	571.350830078125	2	571.428993	1140.84343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.966	1	43.66	43.16	44.16	-0.30616								0	0	0	0.77008	1	16421	16421		0.6015	0	1		+		16665	15247;9921	10205	10258	16004	16004					0.27864579146557844
KKKKKKKLL	9	Unmodified	_KKKKKKKLL_					0	0	0			REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF;REV__AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense	REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S3	3	571.7011108398438	2	571.428993	1140.84343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.85	1	47.534	47.034	48.034	-0.31525								0	0	0	0.77008	1	17981	17981		0.6015	0	1		+		16666	15247;9921	10205	10258	16005	16005					0.27864579146557844
KKKKKKKPKKA	11	Unmodified	_KKKKKKKPKKA_					0	0	0			REV__ENSG00000105849|ENST00000222567|POLR1F	REV__ENSG00000105849|ENST00000222567|POLR1F	MSMS	HCT116MG_D190212_S2	2	670.4864501953125	2	670.484831	1338.95511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.187	1	45.094	44.594	45.594	-0.092472								0	0	0	0.96208	1	17177	17177		0	0	1		+		16667	11276	10206	10259	16006	16006					0.2991901350367243
KKKKKKKQK	9	Unmodified	_KKKKKKKQK_					0	0	0			REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;REV__SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	391.2303771972656	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.147	1	48.782	48.282	49.282	-0.365								0	0	0	0.77019	1	18220	18220		0.23584	0	1		+		16668	11889;13176	10207	10260	16007	16007					0.25026506998392506
KKKKKKLHLK	10	Unmodified	_KKKKKKLHLK_					0	0	0			REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56	REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56	MSMS	HCT116MG_D190212_S2	2	640.2052001953125	2	639.958449	1277.90235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.738	1	50.566	50.066	51.066	-0.1719								0	0	0	0.9696	1	19451	19451		0.35063	0.35063	1		+		16669	17207	10208	10261	16008	16008					0.2745105544086073
KKKKKKLLLVT	11	Unmodified	_KKKKKKLLLVT_					0	0	0			REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF	REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S1	1	663.98388671875	2	663.98159	1325.94863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.615	1	17.615	17.115	18.115	0								0	0	0	0.96208	1	6006	6006		0	0	1		+		16670	15247	10209	10262	16009	16009					0.29869075552301183
KKKKKKLRLRA	11	Unmodified	_KKKKKKLRLRA_					0	0	0			REV__AluSx3_dup29941|chr19:41720501-41720799:-|1.5544935485926912|0.0583639242761596|4.74|481.0|9|3|sense	REV__AluSx3_dup29941|chr19:41720501-41720799:-|1.5544935485926912|0.0583639242761596|4.74|481.0|9|3|sense	MSMS	HCT116MG_D190212_S1	1	698.9205932617188	2	699.00118	1395.98781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.586	1	38.586	38.086	39.086	0								0	0	0	0.96208	1	14450	14450		0	0	1		+		16671	9931	10210	10263	16010	16010					0.30565220626522205
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.215	1	4.215	3.715	4.715	0								0	0	0	0.97116	1	1264	1264		0	0	1		+		16672	13918	10211	10264	16011	16011					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3156433105469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7282	1	4.7282	4.2282	5.2282	0								0	0	0	0.97116	1	1421	1421		0	0	1		+		16673	13918	10211	10264	16012	16012					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2435	1	5.2435	4.7435	5.7435	0								0	0	0	0.97116	1	1577	1577		0	0	1		+		16674	13918	10211	10264	16013	16013					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.31561279296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7518	1	5.7518	5.2518	6.2518	0								0	0	0	0.97116	1	1729	1729		0	0	1		+		16675	13918	10211	10264	16014	16014					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3157958984375	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2645	1	6.2645	5.7645	6.7645	0								0	0	0	0.97116	1	1887	1887		0	0	1		+		16676	13918	10211	10264	16015	16015					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3155517578125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7723	1	6.7723	6.2723	7.2723	0								0	0	0	0.97116	1	2042	2042		0	0	1		+		16677	13918	10211	10264	16016	16016					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.31561279296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2822	1	7.2822	6.7822	7.7822	0								0	0	0	0.97116	1	2197	2197		0	0	1		+		16678	13918	10211	10264	16017	16017					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.7826	1	7.7826	7.2826	8.2826	0								0	0	0	0.97116	1	2353	2353		0	0	1		+		16679	13918	10211	10264	16018	16018					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3153381347656	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8056	1	8.8056	8.3056	9.3056	0								0	0	0	0.97116	1	2658	2658		0	0	1		+		16680	13918	10211	10264	16019	16019					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3154296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3113	1	9.3113	8.8113	9.8113	0								0	0	0	0.97116	1	2820	2820		0	0	1		+		16681	13918	10211	10264	16020	16020					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.31561279296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8382	1	9.8382	9.3382	10.338	0								0	0	0	0.97116	1	2993	2993		0	0	1		+		16682	13918	10211	10264	16021	16021					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3150939941406	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.373	1	10.373	9.8727	10.873	0								0	0	0	0.97116	1	3179	3179		0	0	1		+		16683	13918	10211	10264	16022	16022					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.31561279296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.699	1	11.699	11.199	12.199	0								0	0	0	0.97116	1	3705	3705		0	0	1		+		16684	13918	10211	10264	16023	16023					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.3153991699219	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.331	1	12.331	11.831	12.831	0								0	0	0	0.97116	1	3951	3951		0	0	1		+		16685	13918	10211	10264	16024	16024					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.31561279296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.277	1	16.277	15.777	16.777	0								0	0	0	0.96911	1	5467	5467		0.15932	0	1		+		16686	13918	10211	10264	16025	16025					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.7209777832031	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.391	1	22.391	21.891	22.891	0								0	0	0	0.97116	1	7925	7925		0	0	1		+		16687	13918	10211	10264	16026	16026					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.2262268066406	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.201	1	26.201	25.701	26.701	0								0	0	0	0.96377	1	9457	9457		0.69767	0	1		+		16688	13918	10211	10264	16027	16027					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	419.3155822753906	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.06976	1	0.065821	-0.43418	0.56582	-0.0039395								0	0	0	0.97116	1	27	27		0	0	1		+		16689	13918	10211	10264	16028	16028					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	419.3157958984375	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.865	1	14.546	14.046	15.046	-0.31952								0	0	0	0.97116	1	4898	4898		0	0	1		+		16690	13918	10211	10264	16029	16029					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3155822753906	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.081413	1	0.14232	-0.35768	0.64232	0.060905								0	0	0	0.97116	1	32	32		0	0	1		+		16691	13918	10211	10264	16030	16030					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.31549072265625	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2856	1	6.3	5.8	6.8	0.01438								0	0	0	0.97116	1	1901	1901		0	0	1		+		16692	13918	10211	10264	16031	16031					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3156433105469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8032	1	6.8171	6.3171	7.3171	0.013901								0	0	0	0.97116	1	2058	2058		0	0	1		+		16693	13918	10211	10264	16032	16032					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3153991699219	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3038	1	7.3177	6.8177	7.8177	0.013901								0	0	0	0.97116	1	2208	2208		0	0	1		+		16694	13918	10211	10264	16033	16033					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.31549072265625	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8485	1	8.8691	8.3691	9.3691	0.020599								0	0	0	0.97116	1	2673	2673		0	0	1		+		16695	13918	10211	10264	16034	16034					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3153381347656	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3554	1	9.3815	8.8815	9.8815	0.026101								0	0	0	0.97116	1	2826	2826		0	0	1		+		16696	13918	10211	10264	16035	16035					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	628.4607543945312	2	628.46865	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.065	1	39.764	39.264	40.264	-0.30137								0	0	0	0.97116	1	14862	14862		0	0	1		+		16697	13918	10211	10264	16036	16036					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	628.43603515625	2	628.46865	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.832	1	40.531	40.031	41.031	-0.30161								0	0	0	0.97116	1	15171	15171		0	0	1		+		16698	13918	10211	10264	16037	16037					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	628.7631225585938	2	628.46865	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.358	1	41.056	40.556	41.556	-0.30185								0	0	0	0.97116	1	15383	15383		0	0	1		+		16699	13918	10211	10264	16038	16038					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	628.468994140625	2	628.46865	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.176	1	45.863	45.363	46.363	-0.31237								0	0	0	0.97116	1	17308	17308		0	0	1		+		16700	13918	10211	10264	16039	16039					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.31536865234375	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.746	1	56.462	55.962	56.962	-0.28367								0	0	0	0.96911	1	21549	21549		0.15932	0	1		+		16701	13918	10211	10264	16040	16040					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3153991699219	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.848	1	57.573	57.073	58.073	-0.27434								0	0	0	0.97116	1	21993	21993		0	0	1		+		16702	13918	10211	10264	16041	16041					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.31536865234375	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.86	1	60.614	60.114	61.114	-0.24588								0	0	0	0.97116	1	23215	23215		0	0	1		+		16703	13918	10211	10264	16042	16042					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3156433105469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.727	1	61.488	60.988	61.988	-0.2387								0	0	0	0.97116	1	23565	23565		0	0	1		+		16704	13918	10211	10264	16043	16043					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3153381347656	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.286	1	62.055	61.555	62.555	-0.23129								0	0	0	0.97116	1	23791	23791		0	0	1		+		16705	13918	10211	10264	16044	16044					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3153991699219	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.812	1	62.589	62.089	63.089	-0.22315								0	0	0	0.97116	1	23994	23994		0	0	1		+		16706	13918	10211	10264	16045	16045					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3153076171875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.318	1	63.104	62.604	63.604	-0.21454								0	0	0	0.97116	1	24174	24174		0	0	1		+		16707	13918	10211	10264	16046	16046					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.31573486328125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.34	1	64.134	63.634	64.634	-0.20569								0	0	0	0.97116	1	24486	24486		0	0	1		+		16708	13918	10211	10264	16047	16047					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	419.3153991699219	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.847	1	64.646	64.146	65.146	-0.2009								0	0	0	0.97116	1	24638	24638		0	0	1		+		16709	13918	10211	10264	16048	16048					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.31561279296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6558	1	1.3912	0.89123	1.8912	-0.26456								0	0	0	0.97116	1	505	505		0	0	1		+		16710	13918	10211	10264	16049	16049					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.315673828125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.1756	1	1.911	1.411	2.411	-0.26456								0	0	0	0.97116	1	666	666		0	0	1		+		16711	13918	10211	10264	16050	16050					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7101	1	2.4455	1.9455	2.9455	-0.26456								0	0	0	0.97116	1	829	829		0	0	1		+		16712	13918	10211	10264	16051	16051					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155517578125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2474	1	3.9828	3.4828	4.4828	-0.26456								0	0	0	0.97116	1	1300	1300		0	0	1		+		16713	13918	10211	10264	16052	16052					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155822753906	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.762	1	4.4974	3.9974	4.9974	-0.26456								0	0	0	0.97116	1	1458	1458		0	0	1		+		16714	13918	10211	10264	16053	16053					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2704	1	5.0063	4.5063	5.5063	-0.26414								0	0	0	0.97116	1	1612	1612		0	0	1		+		16715	13918	10211	10264	16054	16054					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.31549072265625	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.778	1	5.5165	5.0165	6.0165	-0.26151								0	0	0	0.97116	1	1764	1764		0	0	1		+		16716	13918	10211	10264	16055	16055					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3387	1	8.1072	7.6072	8.6072	-0.23148								0	0	0	0.97116	1	2548	2548		0	0	1		+		16717	13918	10211	10264	16056	16056					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3154296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8459	1	8.6252	8.1252	9.1252	-0.22071								0	0	0	0.97116	1	2704	2704		0	0	1		+		16718	13918	10211	10264	16057	16057					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3154296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3533	1	9.1436	8.6436	9.6436	-0.20971								0	0	0	0.97116	1	2858	2858		0	0	1		+		16719	13918	10211	10264	16058	16058					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3157043457031	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.399	1	11.217	10.717	11.717	-0.18135								0	0	0	0.97116	1	3519	3519		0	0	1		+		16720	13918	10211	10264	16059	16059					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.248	1	18.073	17.573	18.573	-0.17501								0	0	0	0.97116	1	6112	6112		0	0	1		+		16721	13918	10211	10264	16060	16060					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155517578125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.325	1	19.139	18.639	19.639	-0.18674								0	0	0	0.97116	1	6547	6547		0	0	1		+		16722	13918	10211	10264	16061	16061					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.31561279296875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.039	1	19.845	19.345	20.345	-0.19367								0	0	0	0.97116	1	6835	6835		0	0	1		+		16723	13918	10211	10264	16062	16062					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3156433105469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.728	1	23.48	22.98	23.98	-0.24775								0	0	0	0.97116	1	8323	8323		0	0	1		+		16724	13918	10211	10264	16063	16063					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155822753906	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.78	1	36.395	35.895	36.895	-0.38486								0	0	0	0.97116	1	13473	13473		0	0	1		+		16725	13918	10211	10264	16064	16064					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	628.2677001953125	2	628.46865	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.825	1	36.44	35.94	36.94	-0.38486								0	0	0	0.97116	1	13491	13491		0	0	1		+		16726	13918	10211	10264	16065	16065					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	628.4696044921875	2	628.46865	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.924	1	36.539	36.039	37.039	-0.38486								0	0	0	0.97116	1	13531	13531		0	0	1		+		16727	13918	10211	10264	16066	16066					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	628.4698486328125	2	628.46865	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.619	1	38.237	37.737	38.737	-0.38163								0	0	0	0.97116	1	14160	14160		0	0	1		+		16728	13918	10211	10264	16067	16067					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.7184143066406	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.269	1	38.888	38.388	39.388	-0.38055								0	0	0	0.97116	1	14422	14422		0.15932	0.15932	1		+		16729	13918	10211	10264	16068	16068					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	628.8693237304688	2	628.46865	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.164	1	47.796	47.296	48.296	-0.36759								0	0	0	0.97116	1	17829	17829		0	0	1		+		16730	13918	10211	10264	16069	16069					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	418.92596435546875	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.419	1	54.095	53.595	54.595	-0.32349								0	0	0	0.97116	1	20347	20347		0	0	1		+		16731	13918	10211	10264	16070	16070					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3156433105469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.035	1	55.727	55.227	56.227	-0.30856								0	0	0	0.97116	1	20996	20996		0	0	1		+		16732	13918	10211	10264	16071	16071					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155517578125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.938	1	56.638	56.138	57.138	-0.3004								0	0	0	0.97116	1	21358	21358		0	0	1		+		16733	13918	10211	10264	16072	16072					0.3054822610070005
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	REV__RSBN1L|p.N549Ifs*27|1|0.34|ENSG00000187257|chr7:77773162-77773162|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.3155517578125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.605	1	57.31	56.81	57.81	-0.29465								0	0	0	0.97116	1	21627	21627		0	0	1		+		16734	13918	10211	10264	16073	16073					0.3054822610070005
KKKKKLLLVT	10	Unmodified	_KKKKKLLLVT_					0	0	0			REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF	REV__ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S1	1	400.29046630859375	3	400.291831	1197.85366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.777	1	57.777	57.277	58.277	0								0	0	0	0.97054	1	22240	22240		0.13989	0.13989	1		+		16735	15247	10212	10265	16074	16074					0.262651420811153
KKKKKLVFF	9	Unmodified	_KKKKKLVFF_					0	0	0			REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S4	4	389.26446533203125	3	389.265505	1164.77469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.608	1	55.296	54.796	55.796	-0.312								0	0	0	0.77018	1	20826	20826		0.26902	0.1097	1		+		16736	16197	10213	10266	16075	16075					0.19888914846842454
KKKKKRKLA	9	Unmodified	_KKKKKRKLA_					0	0	0			REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant	REV__KNOP1|p.K373Nfs*2|1|0.13|ENSG00000103550|chr16:19707168-19707168|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	564.4072875976562	2	564.408592	1126.80263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.911	1	22.525	22.025	23.025	-0.3852								0	0	0	0.77025	1	8140	8140		0	0	1		+		16737	11197	10214	10267	16076	16076					0.24430237826936718
KKKKKRKYLGI	11	Unmodified	_KKKKKRKYLGI_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|33|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|33|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|2.023350116566841|0.2056128638309657|3.3|382.0|33|2|sense	MSMS	HCT116MG_D190212_S3	3	695.4749145507812	2	695.474463	1388.93437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.098	1	61.866	61.366	62.366	-0.23129								0	0	0	0.96208	1	23715	23715		0	0	1				16738	9289	10215	10268	16077	16077					0.2554642312404667
KKKKKTNKG	9	Unmodified	_KKKKKTNKG_					0	0	0		nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	MSMS	HCT116MG_D190212_S2	2	530.2970581054688	2	530.353483	1058.69241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.596	1	54.407	53.907	54.907	-0.1894								0	0	0	0.7701	1	21024	21024		0.52476	0.066424	1				16739	4635	10216	10269	16078	16078					0.16541392767885554
KKKKLKALIS	10	Unmodified	_KKKKLKALIS_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MSMS	HCT116MG_D190212_S3	3	386.27484130859375	3	386.276181	1155.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.961	1	43.655	43.155	44.155	-0.30616								0	0	0	0.96804	1	16419	16419		0.69767	0.55777	1		+		16740	9955	10217	10270	16079	16079					0.23504282529984266
KKKKLKALIS	10	Unmodified	_KKKKLKALIS_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MSMS	HCT116MG_D190212_S4	4	386.2745666503906	3	386.276181	1155.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.976	1	43.602	43.102	44.102	-0.37373								0	0	0	0.97054	1	16184	16184		0.13989	0.13989	1		+		16741	9955	10217	10270	16080	16080					0.23504282529984266
KKKKLLKPGPL	11	Unmodified	_KKKKLLKPGPL_					0	0	0		ENSG00000120057|ENST00000266066|SFRP5	ENSG00000120057|ENST00000266066|SFRP5	ENSG00000120057|ENST00000266066|SFRP5	MSMS	HCT116MG_D190212_S2	2	625.7268676757812	2	625.439558	1248.86456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.696	1	48.552	48.052	49.052	-0.1437								0	0	0	0.9598	1	18613	18613		1.1933	0.12188	1				16742	2682	10218	10271	16081	16081					0.2500854445540881
KKKKMPKLRF	10	Unmodified	_KKKKMPKLRF_					0	0	0		nc|ENSG00000105825|P48307-2|TFPI2;ENSG00000105825|ENST00000222543|TFPI2	nc|ENSG00000105825|P48307-2|TFPI2	nc|ENSG00000105825|P48307-2|TFPI2	MSMS	HCT116MG_D190212_S2	2	435.3580322265625	3	435.284682	1302.83222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.551	1	58.38	57.88	58.88	-0.1703								0	0	0	0.97045	1	22631	22631		0.15932	0	1				16743	2038	10219	10272	16082	16082					0.19291433780745137
KKKKQKRKKEK	11	Unmodified	_KKKKQKRKKEK_					0	0	0		ENST00000378150.1_1_10:15177331-15210611:-|nuORF;ENSG00000152465|ENST00000378165|NMT2	ENST00000378150.1_1_10:15177331-15210611:-|nuORF	ENST00000378150.1_1_10:15177331-15210611:-|nuORF	MSMS	HCT116MG_D190212_S2	2	728.994873046875	2	728.993552	1455.97255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.566	1	63.443	62.943	63.943	-0.12264								0	0	0	0.96149	1	24637	24637		0.30703	0	1				16744	4152	10220	10273	16083	16083					0.2628030903867966
KKKKTKREQLS	11	Unmodified	_KKKKTKREQLS_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	687.4323120117188	2	687.432993	1372.85143	0.86521	0.00059477	-0.99215	-0.00068204	-0.12694	-8.7265E-05	687.9338601282333	56.401	0.42009	56.095	55.937	56.357	-0.30626					12	7	2	0	0	0	0.74191	1	21141	21141		2.4985	1.3051	1	3667800			16745	4716	10221	10274	16084	16084					0.17992061605400522
KKKKTKREQLS	11	Unmodified	_KKKKTKREQLS_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	687.432993	1372.85143	0.76328	0.00052471	-0.94441	-0.00064922	-0.18112	-0.00012451	687.4322159096163	56.142	0.66887	56.142	55.862	56.531	0	0.037186	-6.4639E-05	NaN	2.4985	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62373000			16746	4716	10221	10274							0.17992061605400522
KKKKTKREQLS	11	Unmodified	_KKKKTKREQLS_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	687.432993	1372.85143	0.60081	0.00041302	-0.86902	-0.00059739	-0.2682	-0.00018437	687.4321983103456	56.261	0.62423	56.078	55.847	56.471	-0.18261	-0.027088	3.9012E-05	NaN	2.4985	40	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133690000			16747	4716	10221	10274							0.17992061605400522
KKKKTKREQLS	11	Unmodified	_KKKKTKREQLS_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	687.432993	1372.85143	0.86521	0.00059477	-0.99215	-0.00068204	-0.12694	-8.7265E-05	687.9338601282333	56.401	0.42009	56.095	55.937	56.357	-0.30626	-0.010098	-0.00013028	NaN	2.4985	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3667800			16748	4716	10221	10274							0.17992061605400522
KKKKVIVIPV	10	Unmodified	_KKKKVIVIPV_					0	0	0		VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant;ENSG00000110799|ENST00000261405|VWF	VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant	VWF|p.D1472Tfs*53|1|0.21|ENSG00000110799|chr12:6019004-6019004|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	384.611572265625	3	384.612793	1150.81655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.723	1	13.798	13.298	14.298	0.074899								0	0	0	0.97045	1	4371	4371		0.15932	0	1				16749	2262	10222	10275	16085	16085					0.24717470535347275
KKKKVPKLIK	10	Unmodified	_KKKKVPKLIK_					0	0	0			REV__ENST00000562367.1_1_16:58208309-58230657:-|nuORF	REV__ENST00000562367.1_1_16:58208309-58230657:-|nuORF	MSMS	HCT116MG_D190212_S3	3	605.4430541992188	2	605.442101	1208.86965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.982	1	49.667	49.167	50.167	-0.31525								0	0	0	0.9696	1	18836	18836		0.35063	0.35063	1		+		16750	10300	10223	10276	16086	16086					0.27356848318027005
KKKLFKKF	8	Unmodified	_KKKLFKKF_					0	0	0			REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	REV__tr|U7SUE3|U7SUE3_FUSNUPrimosomalproteinN'OS=FusobacteriumnucleatumCTI-5OX=1316586GN=priAPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	356.2431335449219	3	356.2427	1065.70627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.251	1	57.982	57.482	58.482	-0.26932								0	0	0	0.8837	1	22155	22155		0	0	1		+		16751	17828	10224	10277	16087	16087					0.17604670266996436
KKKLKKKKNKS	11	Unmodified	_KKKLKKKKNKS_					0	0	0			REV__SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant	REV__SRPK2|p.V366Ifs*7|1|0.02|ENSG00000135250|chr7:105142419-105142422|CTAC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	679.5154418945312	2	679.471921	1356.92929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.085	1	61.949	61.449	62.449	-0.13585								0	0	0	0.96208	1	24058	24058		0	0	1		+		16752	11035	10225	10278	16088	16088					0.2651011926141109
KKKLKKKL	8	Unmodified	_KKKLKKKL_					0	0	0		ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1;nc|ENSG00000135541|Q8N157-2|AHI1	ENSG00000135541|ENST00000265602|AHI1	ENSG00000135541|ENST00000265602|AHI1	MULTI-SECPEP	HCT116MG_D190212_S2	2	507.2627258300781	2	507.381512	1012.74847	0.67732	0.00034366	-3.4147	-0.0017326	-2.7374	-0.0013889	507.3792504881281	48.034	0.20321	47.901	47.79	47.993	-0.13281					5	3	2	0	0	0	0.33409	1	18375	18375		0.69038	0	1	40834000			16753	3356	10226	10279	16089	16089					0.24260645675360593
KKKLKQKEILP	11	Unmodified	_KKKLKQKEILP_					0	0	0			REV__C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	REV__C5|p.W1228Gfs*21|1|0.25|ENSG00000106804|chr9:120976882-120976882|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	676.9536743164062	2	676.95303	1351.89151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.007	1	37.007	36.507	37.507	0								0	0	0	0.96141	1	13813	13813		0.35063	0	1		+		16754	10072	10227	10280	16090	16090					0.22963608275972547
KKKLRKPRH	9	Unmodified	_KKKLRKPRH_					0	0	0		ENST00000553205.1_1_12:112843569-112844143:-|nuORF;ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;RPL6|p.K237Rfs*4|1|0.04|ENSG00000089009|chr12:112405856-112405857|TT/-|frameshift_variant;ENSG00000089009|ENST00000202773|RPL6	ENST00000553205.1_1_12:112843569-112844143:-|nuORF	ENST00000553205.1_1_12:112843569-112844143:-|nuORF	MSMS	HCT116MG_D190212_S2	2	595.5962524414062	2	595.901466	1189.78838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.699	1	40.629	40.129	41.129	-0.069626								0	0	0	0.76967	1	15356	15356		2.0598	0.57785	1				16755	1506	10228	10281	16091	16091					0.2010758539863673
KKKLSVVLLY	10	Unmodified	_KKKLSVVLLY_					0	0	0			REV__ENST00000473682.5_1_1:111740397-111743081:-|nuORF	REV__ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MSMS	HCT116MG_D190212_S3	3	596.3123779296875	2	595.897192	1189.77983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.424	1	45.113	44.613	45.613	-0.31094								0	0	0	0.96291	1	17007	17007		1.8442	0.36234	1		+		16756	12896	10229	10282	16092	16092					0.19253173918832545
KKKMFKKKKKK	11	Unmodified	_KKKMFKKKKKK_					0	0	0		ENSG00000165923|ENST00000525123|AGBL2;nc|ENSG00000165923|Q5U5Z8-3|AGBL2;nc|ENSG00000165923|Q5U5Z8-2|AGBL2	ENSG00000165923|ENST00000525123|AGBL2	ENSG00000165923|ENST00000525123|AGBL2	MSMS	HCT116MG_D190212_S1	1	725.4959716796875	2	725.494342	1448.97413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.495	1	33.495	32.995	33.995	0								0	0	0	0.95954	1	12397	12397		1.3295	0	1				16757	4811	10230	10283	16093	16093					0.2676022680304868
KKKQILKKII	10	Unmodified	_KKKQILKKII_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MSMS	HCT116MG_D190212_S2	2	620.7705688476562	2	620.447383	1238.88021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.731	1	30.464	29.964	30.964	-0.26704								0	0	0	0.97116	1	11310	11310		0	0	1		+		16758	17108	10231	10284	16094	16094					0.2703283097248459
KKKRKKKKKI	10	Unmodified	_KKKRKKKKKI_					0	0	0		ENST00000359543.7_1_16:10626568-10626661:-|nuORF	ENST00000359543.7_1_16:10626568-10626661:-|nuORF	ENST00000359543.7_1_16:10626568-10626661:-|nuORF	MSMS	HCT116MG_D190212_S1	1	657.1859741210938	2	656.984998	1311.95544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.865	1	22.865	22.365	23.365	0								0	0	0	0.96937	1	8116	8116		0.40072	0	1				16759	7339	10232	10285	16095	16095					0.31194433223527085
KKKRKKLKP	9	Unmodified	_KKKRKKLKP_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	HCT116MG_D190212_S1	1	385.1903381347656	3	385.280037	1152.81828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.564	1	25.564	25.064	26.064	0								0	0	0	0.76948	1	9201	9201		2.7352	1.5419	1				16760	6738	10233	10286	16096	16096					0.24798524343964345
KKKRKKLKP	9	Unmodified	_KKKRKKLKP_					0	0	0		ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	HCT116MG_D190212_S4	4	385.28082275390625	3	385.280037	1152.81828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.507	1	36.121	35.621	36.621	-0.38558								0	0	0	0.76991	1	13362	13362		1.1933	0.92432	1				16761	6738	10233	10286	16097	16097					0.24798524343964345
KKKRKRQRLVI	11	Unmodified	_KKKRKRQRLVI_					0	0	0			REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	MSMS	HCT116MG_D190212_S3	3	727.1614990234375	2	727.001711	1451.98887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.02	1	13.09	12.59	13.59	0.069158								0	0	0	0.96208	1	4104	4104		0	0	1		+		16762	15040	10234	10287	16098	16098					0.28095434995452706
KKKRKVEP	8	Unmodified	_KKKRKVEP_					0	0	0		nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP;ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|3|0.37|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant;MPRIP|p.L364Cfs*19|1|0.19|ENSG00000133030|chr17:17143605-17143605|C/-|frameshift_variant;MPRIP|p.N499Tfs*126|1|0.05|ENSG00000133030|chr17:17158446-17158446|A/-|frameshift_variant	nc|ENSG00000133030|Q6WCQ1-3|MPRIP	nc|ENSG00000133030|Q6WCQ1-3|MPRIP	MSMS	HCT116MG_D190212_S1	1	506.7601623535156	2	506.834926	1011.6553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.753	1	20.753	20.253	21.253	0								0	0	0	0.8837	1	7270	7270		2.5775	0	1				16763	3222	10235	10288	16099	16099					0.14993721222128897
KKKRLAKNR	9	Unmodified	_KKKRLAKNR_					0	0	0		nc|ENSG00000152953|Q9NY57-2|STK32B;ENSG00000152953|ENST00000282908|STK32B	nc|ENSG00000152953|Q9NY57-2|STK32B	nc|ENSG00000152953|Q9NY57-2|STK32B	MSMS	HCT116MG_D190212_S4	4	381.2610778808594	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.966	1	55.654	55.154	56.154	-0.312								0	0	0	0.77018	1	20970	20970		0.26902	0.033176	1				16764	4169	10236	10289	16100	16100					0.1919959264469071
KKKSKLIEKLI	11	Unmodified	_KKKSKLIEKLI_					0	0	0			REV__tr|U7SQW6|U7SQW6_FUSNUThioredoxinreductase(NADPH)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01607PE=4SV=1	REV__tr|U7SQW6|U7SQW6_FUSNUThioredoxinreductase(NADPH)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01607PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	664.45556640625	2	664.455405	1326.89626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.651	1	63.528	63.028	64.028	-0.12264								0	0	0	0.96208	1	24670	24670		0	0	1		+		16765	17757	10237	10290	16101	16101					0.24588492418706664
KKKSPRAE	8	Unmodified	_KKKSPRAE_					0	0	0			REV__ENST00000534336.1_1_11:65272284-65272353:+|nuORF	REV__ENST00000534336.1_1_11:65272284-65272353:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	472.287841796875	2	472.287808	942.561064	0.23284	0.00010997	0.25083	0.00011847	0.48367	0.00022843	472.2877546709247	51.23	1.0815	51.051	50.604	51.685	-0.17869					59	20	4	0	0	0	0.80542	1	19545	19545		10.824	4.6181	1	140880000	+		16766	16332	10238	10291	16102	16102					0.0874858239999412
KKKSSKRK	8	Unmodified	_KKKSSKRK_					0	0	0		NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant;ENST00000477789.5_1_X:119059185-119070773:-|nuORF;ENSG00000101882|ENST00000371410|NKAP	NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant	NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	495.33251953125	2	495.33255	988.650548	0.26397	0.00013075	-0.027565	-1.3654E-05	0.2364	0.0001171	495.33242443330886	57.88	0.62071	57.88	57.464	58.085	0					20	11	2	0	0	0	0.8698	1	22200	22200		1.8442	0	1	15592000			16767	1812	10239	10292	16103	16103					0.15576837079379402
KKKTEKEKRKE	11	Unmodified	_KKKTEKEKRKE_					0	0	0		ENST00000332869.5_1_10:60475484-60475616:+|nuORF;FAM133B|p.R91Kfs*13|1|0.38|ENSG00000234545|chr7:92578323-92578324|-/T|frameshift_variant	ENST00000332869.5_1_10:60475484-60475616:+|nuORF	ENST00000332869.5_1_10:60475484-60475616:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	477.959228515625	3	477.95958	1430.85691	0.1222	5.8407E-05	-0.54165	-0.00025889	-0.41945	-0.00020048	477.95925323144274	51.945	1.0332	51.945	51.143	52.176	0					48	19	4	0	0	0	0.74191	1	19657	19657		0.40827	0.041592	1	121020000			16768	7169	10240	10293	16104	16104					0.1587174039718775
KKKVLLLII	9	Unmodified	_KKKVLLLII_					0	0	0		tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	tr|U7SNL5|U7SNL5_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01803PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	534.4005737304688	2	534.39937	1066.78419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.899	1	48.747	48.247	49.247	-0.15128								0	0	0	0.7701	1	18697	18697		0.52476	0.52476	1				16769	18367	10241	10294	16105	16105					0.2534668313237489
KKLAFYNPG	9	Unmodified	_KKLAFYNPG_					0	0	0		SERPINA12|p.N267Kfs*10|1|0.2|ENSG00000165953|chr14:94496477-94496478|-/T|frameshift_variant;ENSG00000165953|ENST00000677451|SERPINA12	SERPINA12|p.N267Kfs*10|1|0.2|ENSG00000165953|chr14:94496477-94496478|-/T|frameshift_variant	SERPINA12|p.N267Kfs*10|1|0.2|ENSG00000165953|chr14:94496477-94496478|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	519.2918701171875	2	519.292559	1036.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.061	1	36.676	36.176	37.176	-0.38486								0	0	0	0.7689	1	13586	13586		4.756	0.42677	1				16770	4812	10242	10295	16106	16106					0.053743506855198575
KKLEELRQRLT	11	Unmodified	_KKLEELRQRLT_					0	0	0			REV__FRMD4A|p.E433Rfs*10|1|0.22|ENSG00000151474|chr10:13670483-13670483|C/-|frameshift_variant	REV__FRMD4A|p.E433Rfs*10|1|0.22|ENSG00000151474|chr10:13670483-13670483|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	707.4304809570312	2	707.43045	1412.84635	0.82204	0.00058154	-0.39656	-0.00028054	0.42548	0.000301	707.4297790407556	55.528	0.2055	55.528	55.4	55.606	0					6	3	2	0	0	0	0.74191	1	21351	21351		0	0	1	43114000	+		16771	12603	10243	10296	16107	16107					0.15643757742736852
KKLIRLLLL	9	Unmodified	_KKLIRLLLL_					0	0	0			REV__tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	REV__tr|U7SWT9|U7SWT9_FUSNUGntRfamilytranscriptionalregulator/MocRfamilyaminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01171PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	555.4109497070312	2	555.410269	1108.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.613	1	23.573	23.073	24.073	-0.03968								0	0	0	0.7701	1	8346	8346		0.52476	0	1		+		16772	17857	10244	10297	16108	16108					0.2559348788092848
KKLLILLLF	9	Unmodified	_KKLLILLLF_					0	0	0		tr|U7STW9|U7STW9_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01595PE=4SV=1	tr|U7STW9|U7STW9_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01595PE=4SV=1	tr|U7STW9|U7STW9_FUSNUThioredoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01595PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	550.8319091796875	2	550.893921	1099.77329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.541	1	48.397	47.897	48.897	-0.1437								0	0	0	0.7701	1	18549	18549		0.52476	0	1				16773	18455	10245	10298	16109	16109					0.22739280758082714
KKLLILPLIIL	11	Unmodified	_KKLLILPLIIL_					0	0	0		tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	638.970947265625	2	638.97016	1275.92577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.678	1	11.396	10.896	11.896	-0.28186								0	0	0	0.96208	1	3777	3777		0	0	1				16774	18506	10246	10299	16110	16110					0.2988405643486658
KKLLIRSKVP	10	Unmodified	_KKLLIRSKVP_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-2|MLIP	REV__nc|ENSG00000146147|Q5VWP3-2|MLIP	MSMS	HCT116MG_D190212_S1	1	591.4088745117188	2	591.408258	1180.80196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.516	1	33.516	33.016	34.016	0								0	0	0	0.96291	1	12406	12406		1.8442	0	1		+		16775	12477	10247	10300	16111	16111					0.2187939838722741
KKLLKKGKSLL	11	Unmodified	_KKLLKKGKSLL_					0	0	0			REV__ENSG00000060709|ENST00000690449|RIMBP2	REV__ENSG00000060709|ENST00000690449|RIMBP2	MSMS	HCT116MG_D190212_S4	4	419.30023193359375	3	419.298986	1254.87513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.518	1	60.252	59.752	60.752	-0.26582								0	0	0	0.96208	1	22805	22805		0	0	1		+		16776	10670	10248	10301	16112	16112					0.2578852710985302
KKLLKKYLALP	11	Unmodified	_KKLLKKYLALP_					0	0	0			REV__ENST00000427635.6_1_10:69682690-69747802:-|nuORF	REV__ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MSMS	HCT116MG_D190212_S3	3	438.9665832519531	3	438.967236	1313.87988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.814	1	47.499	46.999	47.999	-0.31525								0	0	0	0.96111	1	17966	17966		0.50596	0	1		+		16777	12550	10249	10302	16113	16113					0.23549411252611208
KKLLKRLVKV	10	Unmodified	_KKLLKRLVKV_					0	0	0			REV__ENST00000414369.2_1_2:53984069-54014663:-|nuORF	REV__ENST00000414369.2_1_2:53984069-54014663:-|nuORF	MSMS	HCT116MG_D190212_S3	3	612.9493408203125	2	612.94755	1223.88055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.804	1	44.494	43.994	44.994	-0.30927								0	0	0	0.97116	1	16757	16757		0	0	1		+		16778	11534	10250	10303	16114	16114					0.27756250692300455
KKLPELRR	8	Unmodified	_KKLPELRR_					0	0	0		ENSG00000105137|ENST00000342784|SYDE1;nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENST00000600252.5_1_19:15219832-15221230:+|nuORF	ENSG00000105137|ENST00000342784|SYDE1	ENSG00000105137|ENST00000342784|SYDE1	MSMS	HCT116MG_D190212_S2	2	520.3407592773438	2	520.340375	1038.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.798	1	60.649	60.149	61.149	-0.14852								0	0	0	0.8837	1	23538	23538		0.69038	0	1				16779	1982	10251	10304	16115	16115					0.14841123596420402
KKLRDRVASW	10	Unmodified	_KKLRDRVASW_					0	0	0		MCC|p.I127V|1|0.07|ENSG00000171444|chr5:113385004-113385004|T/C|missense_variant	MCC|p.I127V|1|0.07|ENSG00000171444|chr5:113385004-113385004|T/C|missense_variant	MCC|p.I127V|1|0.07|ENSG00000171444|chr5:113385004-113385004|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	629.8726806640625	2	629.872571	1257.73059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.711	1	40.641	40.141	41.141	-0.069626								0	0	0	0.92272	1	15361	15361		10.824	0.75	1				16780	9323	10252	10305	16116	16116					0.11203278682546625
KKLRSRQGP	9	Unmodified	_KKLRSRQGP_					0	0	0			REV__AluJb_dup107864|chr17:42999154-42999315:-|6.003751951280898|0.0002278324850216|14.69|483.0|4|2|sense	REV__AluJb_dup107864|chr17:42999154-42999315:-|6.003751951280898|0.0002278324850216|14.69|483.0|4|2|sense	MSMS	HCT116MG_D190212_S2	2	535.3338623046875	2	535.333082	1068.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.526	1	18.163	17.663	18.663	-0.36325								0	0	0	0.768	1	6372	6372		7.9102	0.62092	1		+		16781	9919	10253	10306	16117	16117					0.12003051448255064
KKLTEQYKKIY	11	Unmodified	_KKLTEQYKKIY_					0	0	0			REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	MSMS	HCT116MG_D190212_S4	4	721.4221801757812	2	721.424302	1440.83405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.747	1	53.417	52.917	53.917	-0.32923								0	0	0	0.96003	1	20076	20076		1.0715	0.72083	1		+		16782	13087	10254	10307	16118	16118					0.1312672127969563
KKLVKKLAK	9	Unmodified	_KKLVKKLAK_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MSMS	HCT116MG_D190212_S4	4	528.3897094726562	2	528.386794	1054.75904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.32	1	58.031	57.531	58.531	-0.28879								0	0	0	0.7701	1	21916	21916		0.52476	0	1				16783	6266;7818	10255	10308	16119	16119					0.2338462832976802
KKLYRKHFV	9	Unmodified	_KKLYRKHFV_					0	0	0			REV__ENSG00000105397|ENST00000525621|TYK2	REV__ENSG00000105397|ENST00000525621|TYK2	MSMS	HCT116MG_D190212_S3	3	609.8763427734375	2	609.877125	1217.7397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0047	1	3.0499	2.5499	3.5499	0.045237								0	0	0	0.7701	1	911	911		0.52476	0	1		+		16784	11252	10256	10309	16120	16120					0.13953672038860532
KKMIKWKKQQV	11	Unmodified	_KKMIKWKKQQV_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	722.9457397460938	2	722.944682	1443.87481	1.0986	0.00079425	0.6812	0.00049247	1.7798	0.0012867	722.9447905816808	56.654	0.42409	56.471	56.259	56.683	-0.18261					17	7	4	0	0	0	0.74191	1	21883	21883		1.3295	1.3295	1	20461000	+		16785	9993	10257	10310	16121	16121					0.1706278411832045
KKMIKWKKQQV	11	Unmodified	_KKMIKWKKQQV_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	722.944682	1443.87481	0.77176	0.00055794	1.3416	0.00096991	2.1134	0.0015278	722.9454541180871	56.557	0.30893	56.557	56.326	56.634	0	0.043093	0.00034203	NaN	1.3295	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14426000	+		16786	9993	10257	10310							0.1706278411832045
KKMIKWKKQQV	11	Unmodified	_KKMIKWKKQQV_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	722.944682	1443.87481	1.0986	0.00079425	0.6812	0.00049247	1.7798	0.0012867	722.9447905816808	56.654	0.42409	56.471	56.259	56.683	-0.18261	-0.043093	-0.00061285	NaN	1.3295	17	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20461000	+		16787	9993	10257	10310							0.1706278411832045
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S2	2	388.2537536621094	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.291	1	35.149	34.649	35.649	-0.14245								0	0	0	0.76954	1	13159	13159		2.4985	0.75621	1				16788	6842	10258	10311	16122	16122					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S2	2	388.2543029785156	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.194	1	61.045	60.545	61.545	-0.14852								0	0	0	0.77018	1	23698	23698		0.26902	0.17418	1				16789	6842	10258	10311	16123	16123					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S2	2	388.2541198730469	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.82	1	61.678	61.178	62.178	-0.14227								0	0	0	0.77018	1	23951	23951		0.26902	0.17418	1				16790	6842	10258	10311	16124	16124					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S2	2	388.2536926269531	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.481	1	62.345	61.845	62.845	-0.13585								0	0	0	0.77018	1	24218	24218		0.26902	0.26902	1				16791	6842	10258	10311	16125	16125					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S3	3	388.25384521484375	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.723	1	58.459	57.959	58.959	-0.26405								0	0	0	0.76995	1	22345	22345		1.0715	0.80244	1				16792	6842	10258	10311	16126	16126					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2541809082031	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.968	1	45.596	45.096	46.096	-0.37206								0	0	0	0.76995	1	16976	16976		1.0715	0.80244	1				16793	6842	10258	10311	16127	16127					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2535400390625	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.956	1	49.596	49.096	50.096	-0.35987								0	0	0	0.77018	1	18545	18545		0.26902	0.17418	1				16794	6842	10258	10311	16128	16128					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2539978027344	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.796	1	53.467	52.967	53.967	-0.32923								0	0	0	0.77018	1	20096	20096		0.26902	0.17418	1				16795	6842	10258	10311	16129	16129					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.25390625	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.03	1	55.721	55.221	56.221	-0.30903								0	0	0	0.77018	1	20994	20994		0.26902	0.26902	1				16796	6842	10258	10311	16130	16130					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2538146972656	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.834	1	56.534	56.034	57.034	-0.3004								0	0	0	0.77018	1	21316	21316		0.26902	0	1				16797	6842	10258	10311	16131	16131					0.16760384452322796
KKMLFLVKR	9	Unmodified	_KKMLFLVKR_					0	0	0		ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	ENST00000260665.11_1_2:44145453-44145528:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.25408935546875	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.566	1	61.312	60.812	61.812	-0.25457								0	0	0	0.77018	1	23229	23229		0.26902	0.17418	1				16798	6842	10258	10311	16132	16132					0.16760384452322796
KKNKKMVKK	9	Unmodified	_KKNKKMVKK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MSMS	HCT116MG_D190212_S2	2	377.9185485839844	3	377.917999	1130.73217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6097	1	9.3546	8.8546	9.8546	-0.25508								0	0	0	0.76954	1	3008	3008		2.4985	0	1				16799	1216	10259	10312	16133	16133					0.17203196446962465
KKNRDDKRPL	10	Unmodified	_KKNRDDKRPL_					0	0	0		ENST00000216121.11_1_22:29951115-29951346:-|nuORF	ENST00000216121.11_1_22:29951115-29951346:-|nuORF	ENST00000216121.11_1_22:29951115-29951346:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	635.8740234375	2	635.372935	1268.73132	0.43993	0.00027952	-0.70555	-0.00044829	-0.26562	-0.00016877	635.3722073218481	52.511	1.2494	52.171	51.884	53.134	-0.34023					37	23	2	0	0	0	0.88752	1	19611	19611		1.6526	1.6526	1	4254900			16800	6735	10260	10313	16134	16134					0.1077007333160509
KKPAAAKKGLG	11	Unmodified	_KKPAAAKKGLG_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MSMS	HCT116MG_D190212_S2	2	534.8482666015625	2	534.848033	1067.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.08	1	47.948	47.448	48.448	-0.13281								0	0	0	0.93456	1	18358	18358		14.405	0.79051	1				16801	4045	10261	10314	16135	16135					0.15037990393580003
KKPAKDKSST	10	Unmodified	_KKPAKDKSST_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1;MLLT1|p.Q461Rfs*46|2|0.33|ENSG00000130382|chr19:6213965-6213965|G/-|frameshift_variant	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MULTI-MSMS	HCT116MG_D190212_S1	1	545.156982421875	2	545.316763	1088.61897	0.44987	0.00024532	-0.078638	-4.2882E-05	0.37123	0.00020244	545.316477407447	49.517	0.7759	49.517	48.974	49.75	0					24	14	2	0	0	0	0.87059	2	18721	18721;18749		5.7319	0.83484	1	84953000			16802	3076	10262	10315	16136;16137	16136					0.07820799534761136
KKPAKDKSST	10	Unmodified	_KKPAKDKSST_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1;MLLT1|p.Q461Rfs*46|2|0.33|ENSG00000130382|chr19:6213965-6213965|G/-|frameshift_variant	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MULTI-MSMS	HCT116MG_D190212_S4	4	545.3159790039062	2	545.316763	1088.61897	0.36269	0.00019778	0.2676	0.00014593	0.63029	0.00034371	545.3167109902226	48.895	2.3687	48.53	47.782	50.151	-0.365					128	56	4	0	0	0	0.87059	1	18648	18648		5.7319	0.83484	1	17010000			16803	3076	10262	10315	16138	16138					0.07820799534761136
KKPAKSNHINL	11	Unmodified	_KKPAKSNHINL_					0	0	0			REV__BRCA1|p.K739Ifs*15|1|0.31|ENSG00000012048|chr17:43093315-43093316|-/TA|frameshift_variant	REV__BRCA1|p.K739Ifs*15|1|0.31|ENSG00000012048|chr17:43093315-43093316|-/TA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	625.47216796875	2	625.372404	1248.73025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.6	1	50.286	49.786	50.786	-0.31381								0	0	0	0.95408	1	19085	19085		4.1895	0.24511	1		+		16804	10051	10263	10316	16139	16139					0.11583858962717386
KKPFLHRRRR	10	Unmodified	_KKPFLHRRRR_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MSMS	HCT116MG_D190212_S1	1	697.4404296875	2	697.441821	1392.86909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.888	1	62.888	62.388	63.388	0								0	0	0	0.96937	1	24292	24292		0.40072	0.40072	1				16805	1428	10264	10317	16140	16140					0.1883686644152931
KKPGMLAF	8	Unmodified	_KKPGMLAF_					0	0	0		ENST00000375163.5_1_9:100372568-100388015:-|nuORF	ENST00000375163.5_1_9:100372568-100388015:-|nuORF	ENST00000375163.5_1_9:100372568-100388015:-|nuORF	MSMS	HCT116MG_D190212_S4	4	446.259033203125	2	446.259674	890.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.655	1	36.27	35.77	36.77	-0.38486								0	0	0	0.8837	1	13422	13422		0.79363	0	1				16806	7505	10265	10318	16141	16141					0.05516238238965343
KKPHLLKLRFK	11	Unmodified	_KKPHLLKLRFK_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MSMS	HCT116MG_D190212_S1	1	704.4701538085938	2	704.469181	1406.92381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.422	1	24.422	23.922	24.922	0								0	0	0	0.9598	1	8742	8742		1.1933	0.12188	1		+		16807	13979	10266	10319	16142	16142					0.2366244046954762
KKPILCFV	8	Unmodified	_KKPILCFV_					0	0	0		ENST00000498824.4_1_13:41507071-41507173:-|nuORF	ENST00000498824.4_1_13:41507071-41507173:-|nuORF	ENST00000498824.4_1_13:41507071-41507173:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	474.2907409667969	2	474.290974	946.567395	0.29492	0.00013988	-0.25558	-0.00012122	0.039338	1.8658E-05	474.2907927453474	51.415	2.2168	51.236	50.5	52.717	-0.17868					55	42	2	0	0	0	0.8506	2	19808	19808;19885		5.2307	5.2307	1	31773000			16808	8416	10267	10320	16143;16144	16143					0.09197384307151424
KKPPSRRQRHR	11	Unmodified	_KKPPSRRQRHR_					0	0	0		ENSG00000135392|ENST00000678005|DNAJC14	ENSG00000135392|ENST00000678005|DNAJC14	ENSG00000135392|ENST00000678005|DNAJC14	MSMS	HCT116MG_D190212_S3	3	723.4370727539062	2	723.437267	1444.85998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.901	1	49.586	49.086	50.086	-0.31525								0	0	0	0.95636	1	18803	18803		2.9952	0	1				16809	3347	10268	10321	16145	16145					0.15534473085199352
KKPPSRRQRHR	11	Unmodified	_KKPPSRRQRHR_					0	0	0		ENSG00000135392|ENST00000678005|DNAJC14	ENSG00000135392|ENST00000678005|DNAJC14	ENSG00000135392|ENST00000678005|DNAJC14	MSMS	HCT116MG_D190212_S3	3	723.4378051757812	2	723.437267	1444.85998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.877	1	50.563	50.063	51.063	-0.31381								0	0	0	0.95636	1	19197	19197		2.9952	0	1				16810	3347	10268	10321	16146	16146					0.15534473085199352
KKPQVNQQ	8	Unmodified	_KKPQVNQQ_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MSMS	HCT116MG_D190212_S4	4	485.2758483886719	2	485.277441	968.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.611	1	52.271	51.771	52.771	-0.34023								0	0	0	0.8837	1	19618	19618		8.5933	0	1		+		16811	12341	10269	10322	16147	16147					0.05479992020332247
KKPRFLKL	8	Unmodified	_KKPRFLKL_					0	0	0			REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	MSMS	HCT116MG_D190212_S2	2	515.3928833007812	2	515.350212	1028.68587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.841	1	48.698	48.198	49.198	-0.1437								0	0	0	0.8837	1	18673	18673		2.3027	0.24298	1		+		16812	11119	10270	10323	16148	16148					0.17267499607169157
KKPRFLLI	8	Unmodified	_KKPRFLLI_					0	0	0			REV__ENST00000543462.1_1_11:64004599-64005846:+|nuORF	REV__ENST00000543462.1_1_11:64004599-64005846:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.1751403808594	2	507.844762	1013.67497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.358	1	49.999	49.499	50.499	-0.35878								0	0	0	0.8837	1	18707	18707		5.2307	0.90143	1		+		16813	16384	10271	10324	16149	16149					0.16868097232895707
KKPVVRKKK	9	Unmodified	_KKPVVRKKK_					0	0	0			REV__ENST00000549307.5_1_12:58109828-58113249:+|nuORF	REV__ENST00000549307.5_1_12:58109828-58113249:+|nuORF	MSMS	HCT116MG_D190212_S3	3	556.302001953125	2	555.895318	1109.77608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.88	1	49.565	49.065	50.065	-0.31525								0	0	0	0.76978	1	18795	18795		1.6526	1.1279	1		+		16814	12095	10272	10325	16150	16150					0.2255854893560354
KKPVVRKKK	9	Unmodified	_KKPVVRKKK_					0	0	0			REV__ENST00000549307.5_1_12:58109828-58113249:+|nuORF	REV__ENST00000549307.5_1_12:58109828-58113249:+|nuORF	MSMS	HCT116MG_D190212_S3	3	555.9908447265625	2	555.895318	1109.77608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.963	1	49.648	49.148	50.148	-0.31525								0	0	0	0.76978	1	18828	18828		1.6526	0.32309	1		+		16815	12095	10272	10325	16151	16151					0.2255854893560354
KKQKKKRKTSS	11	Unmodified	_KKQKKKRKTSS_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	HCT116MG_D190212_S4	4	449.6236877441406	3	449.624532	1345.85177	0.45707	0.00020551	-0.9446	-0.00042471	-0.48753	-0.00021921	449.62375495389244	56.216	0.42683	55.91	55.668	56.095	-0.30626					17	7	3	0	0	0	0.74191	1	21056	21056		0.094841	0.011491	1	3572800			16816	2979	10273	10326	16152	16152					0.19267481325232438
KKQKKKRKTSS	11	Unmodified	_KKQKKKRKTSS_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	449.624532	1345.85177	0.11438	5.1428E-05	-0.8652	-0.00038902	-0.75082	-0.00033759	449.6241348912449	55.869	0.56466	55.869	55.606	56.171	0	-0.0084076	-3.3505E-05	NaN	0.094841	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29981000			16817	2979	10273	10326							0.19267481325232438
KKQKKKRKTSS	11	Unmodified	_KKQKKKRKTSS_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	449.624532	1345.85177	0.23598	0.0001061	-0.79833	-0.00035895	-0.56234	-0.00025284	449.6240583820727	56.036	0.51385	55.853	55.641	56.155	-0.18373	-0.024524	5.6697E-05	NaN	0.094841	27	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64741000			16818	2979	10273	10326							0.19267481325232438
KKQKKKRKTSS	11	Unmodified	_KKQKKKRKTSS_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant;AKAP9|p.L1203Yfs*16|1|0.24|ENSG00000127914|chr7:92014319-92014319|T/-|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	449.624532	1345.85177	0.45707	0.00020551	-0.9446	-0.00042471	-0.48753	-0.00021921	449.62375495389244	56.216	0.42683	55.91	55.668	56.095	-0.30626	0.032931	-0.0001406	NaN	0.094841	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3572800			16819	2979	10273	10326							0.19267481325232438
KKQKKRRFVF	10	Unmodified	_KKQKKRRFVF_					0	0	0		ENST00000515800.6_1_5:86682715-86685204:+|nuORF	ENST00000515800.6_1_5:86682715-86685204:+|nuORF	ENST00000515800.6_1_5:86682715-86685204:+|nuORF	MSMS	HCT116MG_D190212_S1	1	682.93701171875	2	682.935506	1363.85646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.369	1	18.369	17.869	18.869	0								0	0	0	0.96377	1	6310	6310		1.6526	0.17072	1				16820	8538	10274	10327	16153	16153					0.18908410258632102
KKQLRRRQP	9	Unmodified	_KKQLRRRQP_					0	0	0			REV__nc|ENSG00000160208|Q14684-2|RRP1B	REV__nc|ENSG00000160208|Q14684-2|RRP1B	MSMS	HCT116MG_D190212_S2	2	605.3866577148438	2	605.38618	1208.75781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.757	1	27.415	26.915	27.915	-0.34201								0	0	0	0.768	1	10096	10096		7.9102	3.9658	1		+		16821	12823	10275	10328	16154	16154					0.16177807013582424
KKQNKKKQRWL	11	Unmodified	_KKQNKKKQRWL_					0	0	0			REV__ENST00000454583.6_1_2:152321645-152321711:+|nuORF	REV__ENST00000454583.6_1_2:152321645-152321711:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	495.9779357910156	3	495.643927	1483.90995	0.35979	0.00017833	-0.78153	-0.00038736	-0.42174	-0.00020903	495.6433415825459	22.28	0.26093	22.28	22.115	22.376	0					9	4	3	0	0	0	0.74191	1	7891	7891		4.4062	2.4786	1	12897000	+		16822	15737	10276	10329	16155	16155					0.18735162970483543
KKQRLWRKMFI	11	Unmodified	_KKQRLWRKMFI_					0	0	0		UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant	UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant	UTRN|p.K951Rfs*32|2|0.22|ENSG00000152818|chr6:144461335-144461335|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	767.4644165039062	2	767.463573	1532.91259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.566	1	47.438	46.938	47.938	-0.1284								0	0	0	0.96141	1	18148	18148		0.35063	0	1				16823	18689	10277	10330	16156	16156					0.16745295103805802
KKRAGAQQQRR	11	Unmodified	_KKRAGAQQQRR_					0	0	0			REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	443.2671203613281	3	442.932359	1325.77525	0.1647	7.2951E-05	0.72694	0.00032199	0.89164	0.00039494	442.93263318707034	53.23	0.56471	53.23	52.794	53.359	0					17	10	2	0	0	0	0.74191	1	20425	20425		0.36667	0.36667	1	89896000	+		16824	13815	10278	10331	16157	16157					0.12539102548589653
KKRDKKLIEYR	11	Unmodified	_KKRDKKLIEYR_					0	0	0			REV__tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	REV__tr|U7T096|U7T096_FUSNUFimbrialassemblyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00783PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	738.9540405273438	2	738.954092	1475.89363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.49	1	23.49	22.99	23.99	0								0	0	0	0.95772	1	8368	8368		2.2828	0.80087	1		+		16825	17892	10279	10332	16158	16158					0.17472037013772024
KKREKKRKKKF	11	Unmodified	_KKREKKRKKKF_					0	0	0			REV__ENST00000535284.1_1_16:57095655-57095901:+|nuORF	REV__ENST00000535284.1_1_16:57095655-57095901:+|nuORF	MSMS	HCT116MG_D190212_S3	3	501.9451904296875	3	502.003455	1502.98853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.281	1	50.97	50.47	51.47	-0.31166								0	0	0	0.96192	1	19359	19359		0.08335	0.08335	1		+		16826	16336	10280	10333	16159	16159					0.2571601527556595
KKRERKKLQIL	11	Unmodified	_KKRERKKLQIL_					0	0	0			REV__nc|ENSG00000157823|P59780-2|AP3S2	REV__nc|ENSG00000157823|P59780-2|AP3S2	MSMS	HCT116MG_D190212_S2	2	720.4815063476562	2	720.480277	1438.946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.943	1	60.794	60.294	61.294	-0.14852								0	0	0	0.96149	1	23597	23597		0.30703	0	1		+		16827	17176	10281	10334	16160	16160					0.2440862014736922
KKRERKKLQIL	11	Unmodified	_KKRERKKLQIL_					0	0	0			REV__nc|ENSG00000157823|P59780-2|AP3S2	REV__nc|ENSG00000157823|P59780-2|AP3S2	MSMS	HCT116MG_D190212_S4	4	720.481201171875	2	720.480277	1438.946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.647	1	61.392	60.892	61.892	-0.25457								0	0	0	0.96208	1	23262	23262		0	0	1		+		16828	17176	10281	10334	16161	16161					0.2440862014736922
KKRFVKER	8	Unmodified	_KKRFVKER_					0	0	0			REV__TNS2|p.H32Y|1|0.28|ENSG00000111077|chr12:53051873-53051873|C/T|missense_variant	REV__TNS2|p.H32Y|1|0.28|ENSG00000111077|chr12:53051873-53051873|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	364.2329406738281	3	364.232975	1089.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.107	1	55.801	55.301	56.301	-0.30626								0	0	0	0.8837	1	21025	21025		1.4819	1.1313	1		+		16829	11421	10282	10335	16162	16162					0.13584525970691175
KKRGKRRPRL	10	Unmodified	_KKRGKRRPRL_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MSMS	HCT116MG_D190212_S2	2	647.9345703125	2	647.936371	1293.85819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.896	1	14.576	14.076	15.076	-0.31952								0	0	0	0.96937	1	4911	4911		0.40072	0	1		+		16830	10608	10283	10336	16163	16163					0.2230146406723179
KKRHATIEQV	10	Unmodified	_KKRHATIEQV_					0	0	0			REV__ENSG00000196792|ENST00000357479|STRN3	REV__ENSG00000196792|ENST00000357479|STRN3	MSMS	HCT116MG_D190212_S1	1	605.5530395507812	2	605.356754	1208.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.381	1	23.381	22.881	23.881	0								0	0	0	0.95648	1	8324	8324		3.2813	0.28607	1		+		16831	14047	10284	10337	16164	16164					0.10295285928600606
KKRHLRQRR	9	Unmodified	_KKRHLRQRR_					0	0	0		ST6GAL2|p.R178L|1|0.38|ENSG00000144057|chr2:106843445-106843445|C/A|missense_variant	ST6GAL2|p.R178L|1|0.38|ENSG00000144057|chr2:106843445-106843445|C/A|missense_variant	ST6GAL2|p.R178L|1|0.38|ENSG00000144057|chr2:106843445-106843445|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	639.911865234375	2	639.410521	1276.80649	0.60497	0.00038682	-0.39277	-0.00025114	0.2122	0.00013569	639.4093739680428	60.968	2.5307	60.968	60.081	62.612	0					75	48	2	0	0	0	0.76814	3	23578	23578;23652;23881		0.52476	0	1	15854000			16832	18238	10285	10338	16165;16166;16167	16165					0.17915720373343902
KKRIKKVRRK	10	Unmodified	_KKRIKKVRRK_					0	0	0			REV__ENSG00000175467|ENST00000312397|SART1	REV__ENSG00000175467|ENST00000312397|SART1	MSMS	HCT116MG_D190212_S2	2	670.4774780273438	2	670.477872	1338.94119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.398	1	44.314	43.814	44.814	-0.084797								0	0	0	0.9696	1	16860	16860		0.35063	0.043601	1		+		16833	13515	10286	10339	16168	16168					0.2852778079525251
KKRIKRKVTKA	11	Unmodified	_KKRIKRKVTKA_					0	0	0			REV__ENST00000435009.2_1_13:41341020-41341101:-|nuORF	REV__ENST00000435009.2_1_13:41341020-41341101:-|nuORF	MSMS	HCT116MG_D190212_S1	1	678.47119140625	2	678.469712	1354.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.186	1	59.186	58.686	59.686	0								0	0	0	0.96149	1	22813	22813		0.30703	0	1		+		16834	15611	10287	10340	16169	16169					0.2616065483850889
KKRIVKLLKH	10	Unmodified	_KKRIVKLLKH_					0	0	0			REV__ENST00000551983.1_1_12:104335630-104337190:+|nuORF	REV__ENST00000551983.1_1_12:104335630-104337190:+|nuORF	MSMS	HCT116MG_D190212_S2	2	631.94384765625	2	631.942799	1261.87105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.893	1	50.714	50.214	51.214	-0.17868								0	0	0	0.96937	1	19514	19514		0.40072	0.050084	1		+		16835	13115	10288	10341	16170	16170					0.25058482406802796
KKRKHRKRSRD	11	Unmodified	_KKRKHRKRSRD_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;ANK3|p.K4020Rfs*45|4|0.35|ENSG00000151150|chr10:60068822-60068822|T/-|frameshift_variant;ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;ANK3|p.K3778Nfs*26|1|0.37|ENSG00000151150|chr10:60069547-60069547|T/-|frameshift_variant;ANK3|p.M3608Cfs*4|1|0.37|ENSG00000151150|chr10:60070059-60070059|T/-|frameshift_variant;ANK3|p.K3331Nfs*6|1|0.32|ENSG00000151150|chr10:60070888-60070888|T/-|frameshift_variant;ANK3|p.I3117Sfs*2|3|0.22|ENSG00000151150|chr10:60071532-60071532|T/-|frameshift_variant;ANK3|p.P2846Tfs*8|1|0.32|ENSG00000151150|chr10:60072346-60072347|-/C|frameshift_variant;ANK3|p.K1120Sfs*35|1|0.28|ENSG00000151150|chr10:60088328-60088328|T/-|frameshift_variant;ANK3|p.I2751Yfs*21|1|0.07|ENSG00000151150|chr10:60072630-60072630|T/-|frameshift_variant;ANK3|p.I2751Nfs*14|2|0.36|ENSG00000151150|chr10:60072629-60072630|-/T|frameshift_variant;ANK3|p.K2612Rfs*25|1|0.43|ENSG00000151150|chr10:60073046-60073046|T/-|frameshift_variant;ANK3|p.L1778Tfs*66|1|0.38|ENSG00000151150|chr10:60075550-60075551|-/G|frameshift_variant;ANK3|p.L1161Pfs*13|1|0.32|ENSG00000151150|chr10:60088205-60088206|-/G|frameshift_variant;ANK3|p.R961Kfs*27|1|0.13|ENSG00000151150|chr10:60114291-60114292|-/T|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	HCT116MG_D190212_S4	4	498.3102111816406	3	498.978191	1493.91274	0.50175	0.00025036	1.1068	0.00055226	1.6085	0.00080263	498.9787892412662	53.916	0.83308	53.587	53.041	53.874	-0.32923					19	15	2	0	0	0	0.36631	1	20152	20152		0	0	1	4234800			16836	129	10289	10342	16171	16171					0.1855443114800437
KKRKIIEFRIK	11	Unmodified	_KKRKIIEFRIK_					0	0	0		MBD4|p.K313Rfs*13|2|0.15|ENSG00000129071|chr3:129436705-129436706|TT/-|frameshift_variant	MBD4|p.K313Rfs*13|2|0.15|ENSG00000129071|chr3:129436705-129436706|TT/-|frameshift_variant	MBD4|p.K313Rfs*13|2|0.15|ENSG00000129071|chr3:129436705-129436706|TT/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	730.0970458984375	2	729.985195	1457.95584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.563	1	23.179	22.679	23.679	-0.38324								0	0	0	0.96149	1	8403	8403		0.30703	0	1				16837	9321	10290	10343	16172	16172					0.24517808152722864
KKRKKKKKFK	10	Unmodified	_KKRKKKKKFK_					0	0	0		ENST00000216797.9_1_14:35871071-35871197:-|nuORF	ENST00000216797.9_1_14:35871071-35871197:-|nuORF	ENST00000216797.9_1_14:35871071-35871197:-|nuORF	MSMS	HCT116MG_D190212_S4	4	673.9751586914062	2	673.977173	1345.93979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.608	1	12.439	11.939	12.939	-0.16903								0	0	0	0.97116	1	3921	3921		0	0	1				16838	6743	10291	10344	16173	16173					0.2806614670646468
KKRKKKKKS	9	Unmodified	_KKRKKKKKS_					0	0	0			REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF	REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF	MSMS	HCT116MG_D190212_S2	2	579.9138793945312	2	579.911499	1157.80845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.434	1	49.28	48.78	49.78	-0.15405								0	0	0	0.7701	1	18919	18919		0.52476	0	1		+		16839	14488	10292	10345	16174	16174					0.23585336338601337
KKRKKTQKKFR	11	Unmodified	_KKRKKTQKKFR_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MSMS	HCT116MG_D190212_S4	4	738.4848022460938	2	738.485894	1474.95723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.29	1	58.001	57.501	58.501	-0.28879								0	0	0	0.96149	1	21904	21904		0.30703	0	1				16840	4011	10293	10346	16175	16175					0.23875442241455858
KKRKRKKRKKS	11	Unmodified	_KKRKRKKRKKS_					0	0	0			REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MSMS	HCT116MG_D190212_S2	2	490.7640686035156	3	491.010832	1470.01067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.595	1	50.423	49.923	50.923	-0.1719								0	0	0	0.96192	1	19393	19393		0.08335	0.08335	1		+		16841	13890	10294	10347	16176	16176					0.2944623974399292
KKRKTFDSSR	10	Unmodified	_KKRKTFDSSR_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A;ENST00000521873.1_1_8:79578383-79590923:+|nuORF	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MSMS	HCT116MG_D190212_S2	2	627.0798950195312	2	626.85966	1251.70477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.914	1	51.73	51.23	52.23	-0.18369								0	0	0	0.93202	1	19930	19930		8.7454	0.58988	1				16842	1934	10295	10348	16177	16177					0.08898384440271911
KKRKTRKINKI	11	Unmodified	_KKRKTRKINKI_					0	0	0		ENST00000376510.7_1_10:23409918-23410092:+|nuORF	ENST00000376510.7_1_10:23409918-23410092:+|nuORF	ENST00000376510.7_1_10:23409918-23410092:+|nuORF	MSMS	HCT116MG_D190212_S1	1	706.9808959960938	2	706.980444	1411.94634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.474	1	48.474	47.974	48.974	0								0	0	0	0.96208	1	18446	18446		0	0	1				16843	7515	10296	10349	16178	16178					0.25684039867223873
KKRNVALLL	9	Unmodified	_KKRNVALLL_					0	0	0			REV__ANKRD62|p.L785Cfs*20|1|0.67|ENSG00000181626|chr18:12126174-12126174|T/-|frameshift_variant	REV__ANKRD62|p.L785Cfs*20|1|0.67|ENSG00000181626|chr18:12126174-12126174|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.8585205078125	2	527.858401	1053.70225	0.48463	0.00025582	-0.10589	-5.5895E-05	0.37874	0.00019992	527.8584109126625	60.585	1.086	60.435	60.114	61.2	-0.15007					28	20	2	0	0	0	0.74607	1	23431	23431		2.0598	0.21551	1	14039000	+		16844	9948	10297	10350	16179	16179					0.177545807732713
KKRQKKVQQIH	11	Unmodified	_KKRQKKVQQIH_					0	0	0			REV__nc|ENSG00000228741|Q96N96-3|SPATA13	REV__nc|ENSG00000228741|Q96N96-3|SPATA13	MSMS	HCT116MG_D190212_S2	2	710.9459838867188	2	710.946602	1419.87865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.622	1	24.242	23.742	24.742	-0.38003								0	0	0	0.9598	1	8831	8831		1.1933	0	1		+		16845	17299	10298	10351	16180	16180					0.18550589936398865
KKRQRLEVPP	10	Unmodified	_KKRQRLEVPP_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MSMS	HCT116MG_D190212_S1	1	625.8881225585938	2	625.888221	1249.76189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.397	1	42.397	41.897	42.897	0								0	0	0	0.96377	1	15990	15990		1.6526	0	1		+		16846	12719	10299	10352	16181	16181					0.14699851716659396
KKRRGGTG	8	Unmodified	_KKRRGGTG_					0	0	0		ENST00000537680.5_3_11:61129260-61129597:-|nuORF;ENST00000294072.8_2_11:61129294-61129597:-|nuORF	ENST00000537680.5_3_11:61129260-61129597:-|nuORF	ENST00000537680.5_3_11:61129260-61129597:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	430.2645568847656	2	430.264668	858.514782	0.1035	4.4532E-05	0.054217	2.3328E-05	0.15772	6.786E-05	430.26459794679914	41.546	2.0506	41.546	40.487	42.538	0					93	39	3	0	0	0	0.81821	1	15428	15428		9.3474	6.77	1	61425000			16847	6966	10300	10353	16182	16182					0.0798656228857908
KKRRGGTG	8	Unmodified	_KKRRGGTG_					0	0	0		ENST00000537680.5_3_11:61129260-61129597:-|nuORF;ENST00000294072.8_2_11:61129294-61129597:-|nuORF	ENST00000537680.5_3_11:61129260-61129597:-|nuORF	ENST00000537680.5_3_11:61129260-61129597:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	430.2649841308594	2	430.264668	858.514782	0.091403	3.9328E-05	-0.020805	-8.9518E-06	0.070598	3.0376E-05	430.26453780410185	41.312	2.793	41.244	39.898	42.691	-0.068199					81	53	3	0	0	0	0.8506	1	15558	15558		5.2307	5.2307	1	37410000			16848	6966	10300	10353	16183	16183					0.0798656228857908
KKRRGGTG	8	Unmodified	_KKRRGGTG_					0	0	0		ENST00000537680.5_3_11:61129260-61129597:-|nuORF;ENST00000294072.8_2_11:61129294-61129597:-|nuORF	ENST00000537680.5_3_11:61129260-61129597:-|nuORF	ENST00000537680.5_3_11:61129260-61129597:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	430.264668	858.514782	0.091403	3.9328E-05	-0.020805	-8.9518E-06	0.070598	3.0376E-05	430.26453780410185	41.312	2.793	41.244	39.898	42.691	-0.068199	-0.15093	-4.5844E-05	NaN	9.3474	81	53	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37410000			16849	6966	10300	10353							0.0798656228857908
KKRRGRPRKQP	11	Unmodified	_KKRRGRPRKQP_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MSMS	HCT116MG_D190212_S1	1	469.2589111328125	3	469.635765	1405.88547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.923	1	21.923	21.423	22.423	0								0	0	0	0.96121	1	7737	7737		0.45452	0	1				16850	4138	10301	10354	16184	16184					0.19875947607647504
KKRRKINSVEK	11	Unmodified	_KKRRKINSVEK_					0	0	0			REV__ENST00000515770.1_3_6:18256595-18256652:-|nuORF	REV__ENST00000515770.1_3_6:18256595-18256652:-|nuORF	MSMS	HCT116MG_D190212_S4	4	462.6257629394531	3	462.628165	1384.86267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.339	1	13.175	12.675	13.675	-0.16496								0	0	0	0.9619	1	4179	4179		0.094841	0	1		+		16851	10352	10302	10355	16185	16185					0.18562883699473787
KKRRKKKKKKK	11	Unmodified	_KKRRKKKKKKK_					0	0	0			REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S1	1	742.3162231445312	2	742.541003	1483.06745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.703	1	21.703	21.203	22.203	0								0	0	0	0.96192	1	7648	7648		0.30703	0	1		+		16852	15902	10303	10356	16186	16186					0.34524287300496326
KKRRKQKKKK	10	Unmodified	_KKRRKQKKKK_					0	0	0			REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant	REV__NMT1|p.K63Rfs*17|1|0.32|ENSG00000136448|chr17:45081694-45081694|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	678.477783203125	2	678.475329	1354.93611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.443	1	49.289	48.789	49.789	-0.15405								0	0	0	0.9696	1	18923	18923		0.35063	0	1		+		16853	17351	10304	10357	16187	16187					0.2728347693262094
KKRRKTIANRK	11	Unmodified	_KKRRKTIANRK_					0	0	0			REV__PHIP|p.T1436A|1|0.31|ENSG00000146247|chr6:78946775-78946775|T/C|missense_variant	REV__PHIP|p.T1436A|1|0.31|ENSG00000146247|chr6:78946775-78946775|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	699.9412841796875	2	699.960043	1397.90553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.873	1	31.603	31.103	32.103	-0.27028								0	0	0	0.9598	1	11661	11661		1.1933	0.84271	1		+		16854	17416	10305	10358	16188	16188					0.2224969854758001
KKRRRFRLSI	10	Unmodified	_KKRRRFRLSI_					0	0	0			REV__PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	REV__PIEZO1|p.F1977Lfs*33|1|0.38|ENSG00000103335|chr16:88720403-88720403|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	680.4423828125	2	680.444029	1358.87351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.329	1	50.157	49.657	50.657	-0.1719								0	0	0	0.95648	1	19288	19288		3.2813	1.9518	1		+		16855	11188	10306	10359	16189	16189					0.20842330864479663
KKRRRKRGRFH	11	Unmodified	_KKRRRKRGRFH_					0	0	0		ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant;ENSG00000170396|ENST00000302277|ZNF804A	ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant	ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	508.9156799316406	3	508.990543	1523.9498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.563	1	21.563	21.063	22.063	0								0	0	0	0.9619	1	7592	7592		0.094841	0	1				16856	5128	10307	10360	16190	16190					0.20878147484427245
KKRRSRRQKS	10	Unmodified	_KKRRSRRQKS_					0	0	0			REV__ENSG00000122859|ENST00000242462|NEUROG3	REV__ENSG00000122859|ENST00000242462|NEUROG3	MULTI-MSMS	HCT116MG_D190212_S3	3	665.4190673828125	2	665.418543	1328.82253	0.87271	0.00058072	0.84991	0.00056554	1.7226	0.0011463	665.4190114307264	56.216	0.36609	55.933	55.731	56.097	-0.28367					14	6	3	0	0	0	0.89178	1	21340	21340		1.4819	1.4819	1	1943700	+		16857	11748	10308	10361	16191	16191					0.17127381819591392
KKRRSRRQKS	10	Unmodified	_KKRRSRRQKS_					0	0	0			REV__ENSG00000122859|ENST00000242462|NEUROG3	REV__ENSG00000122859|ENST00000242462|NEUROG3	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	665.418543	1328.82253	0.76124	0.00050654	0.94856	0.00063119	1.7098	0.0011377	665.4190326507987	55.85	0.56466	55.85	55.606	56.171	0	-0.0411	3.7204E-05	NaN	1.4819	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57106000	+		16858	11748	10308	10361							0.17127381819591392
KKRRSRRQKS	10	Unmodified	_KKRRSRRQKS_					0	0	0			REV__ENSG00000122859|ENST00000242462|NEUROG3	REV__ENSG00000122859|ENST00000242462|NEUROG3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	665.418543	1328.82253	0.87271	0.00058072	0.84991	0.00056554	1.7226	0.0011463	665.4190114307264	56.216	0.36609	55.933	55.731	56.097	-0.28367	0.0411	-9.4084E-05	NaN	1.4819	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1943700	+		16859	11748	10308	10361							0.17127381819591392
KKRWLYWK	8	Unmodified	_KKRWLYWK_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	604.8599243164062	2	604.358568	1206.70258	0.38726	0.00023404	-0.33732	-0.00020386	0.049932	3.0177E-05	604.3582140410957	59.221	0.75505	59.221	58.923	59.678	0					46	29	2	0	0	0	0.87635	1	22803	22803		0.69038	0	1	885270			16860	6282	10309	10362	16192	16192					0.10750000493112566
KKRWLYWK	8	Unmodified	_KKRWLYWK_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	604.358568	1206.70258	0.77046	0.00046564	-0.66985	-0.00040483	0.10061	6.0807E-05	604.3580421441781	59.309	0.64625	59.147	58.664	59.31	-0.16228	-0.036771	-0.00020446	NaN	0.69038	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2483000			16861	6282	10309	10362							0.10750000493112566
KKRYLRSRS	9	Unmodified	_KKRYLRSRS_					0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	MULTI-MSMS	HCT116MG_D190212_S3	3	597.8653564453125	2	597.364913	1192.71527	0.56539	0.00033775	-0.97349	-0.00058153	-0.4081	-0.00024379	597.3643216039801	54.597	0.47046	54.301	54.138	54.609	-0.29587					19	8	3	0	0	0	0.74917	1	20719	20719		1.8442	0	1	4397200	+		16862	13882	10310	10363	16193	16193					0.12662411885366964
KKSDCPAG	8	Unmodified	_KKSDCPAG_					0	0	0		ENST00000467290.1_1_X:103375817-103401633:-|nuORF	ENST00000467290.1_1_X:103375817-103401633:-|nuORF	ENST00000467290.1_1_X:103375817-103401633:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.1956787109375	2	403.19727	804.379988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.254	1	58.254	57.754	58.754	0								0	0	0	0.8837	1	22435	22435		0.79363	0	1				16863	8114	10311	10364	16194	16194					-0.03002678968221062
KKSIFRCLV	9	Unmodified	_KKSIFRCLV_					0	0	0			REV__P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant	REV__P2RY10|p.S321Vfs*7|1|0.05|ENSG00000078589|chrX:78961479-78961480|-/TGTAAAAAATA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	547.3328857421875	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.313	1	60.047	59.547	60.547	-0.26631								0	0	0	0.7696	1	22722	22722		2.3027	0.24298	1		+		16864	10837	10312	10365	16195	16195					0.1051524563017665
KKSKNILYNKY	11	Unmodified	_KKSKNILYNKY_					0	0	0			REV__tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	REV__tr|U7SUC7|U7SUC7_FUSNU8-amino-7-oxononanoatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01104PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	699.9078979492188	2	699.908819	1397.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.222	1	43.222	42.722	43.722	0								0	0	0	0.94538	1	16323	16323		8.7454	3.0136	1		+		16865	17826	10313	10366	16196	16196					0.12009567965446877
KKSLPASQPP	10	Unmodified	_KKSLPASQPP_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MSMS	HCT116MG_D190212_S4	4	351.5412902832031	3	351.541475	1051.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.17	1	29.812	29.312	30.312	-0.3571								0	0	0	0.92917	1	10926	10926		5.4027	2.6675	1				16866	4908	10314	10367	16197	16197					0.07885718368675043
KKSRAGRG	8	Unmodified	_KKSRAGRG_					0	0	0			REV__ENSG00000123064|ENST00000306014|DDX54	REV__ENSG00000123064|ENST00000306014|DDX54	MSMS	HCT116MG_D190212_S3	3	430.264892578125	2	430.264668	858.514782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.47	1	40.168	39.668	40.668	-0.30161								0	0	0	0.8837	1	15025	15025		2.5775	0	1		+		16867	11754	10315	10368	16198	16198					0.07986562288567711
KKSRPLTGL	9	Unmodified	_KKSRPLTGL_					0	0	0		nc|ENSG00000071246|Q7L8A9-2|VASH1;VASH1|p.I191Hfs*99|1|0.5|ENSG00000071246|chr14:76775927-76775928|-/C|frameshift_variant;ENSG00000071246|ENST00000167106|VASH1	nc|ENSG00000071246|Q7L8A9-2|VASH1	nc|ENSG00000071246|Q7L8A9-2|VASH1	MSMS	HCT116MG_D190212_S3	3	500.3199768066406	2	500.319109	998.623664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.372	1	61.134	60.634	61.634	-0.2387								0	0	0	0.76978	1	23422	23422		1.6526	0	1				16868	1252	10316	10369	16199	16199					0.12429728468180201
KKSRPLTGL	9	Unmodified	_KKSRPLTGL_					0	0	0		nc|ENSG00000071246|Q7L8A9-2|VASH1;VASH1|p.I191Hfs*99|1|0.5|ENSG00000071246|chr14:76775927-76775928|-/C|frameshift_variant;ENSG00000071246|ENST00000167106|VASH1	nc|ENSG00000071246|Q7L8A9-2|VASH1	nc|ENSG00000071246|Q7L8A9-2|VASH1	MSMS	HCT116MG_D190212_S3	3	500.3196105957031	2	500.319109	998.623664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.081	1	61.85	61.35	62.35	-0.23129								0	0	0	0.76978	1	23708	23708		1.6526	0	1				16869	1252	10316	10369	16200	16200					0.12429728468180201
KKSSKHKRKHK	11	Unmodified	_KKSSKHKRKHK_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MSMS	HCT116MG_D190212_S2	2	696.4389038085938	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.717	1	59.557	59.057	60.057	-0.16012								0	0	0	0.96003	1	23097	23097		1.0715	0	1				16870	5895	10317	10370	16201	16201					0.1835372313919379
KKSSKHKRKHK	11	Unmodified	_KKSSKHKRKHK_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MSMS	HCT116MG_D190212_S4	4	696.4368896484375	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.041	1	59.77	59.27	60.27	-0.27156								0	0	0	0.96003	1	22611	22611		1.0715	0.72083	1				16871	5895	10317	10370	16202	16202					0.1835372313919379
KKTCHGPP	8	Unmodified	_KKTCHGPP_					0	0	0		ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	MSMS	HCT116MG_D190212_S3	3	434.2276916503906	2	434.228905	866.443257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0637	1	4.0924	3.5924	4.5924	0.028732								0	0	0	0.8837	1	1220	1220		0.69038	0	1				16872	1268	10318	10371	16203	16203					0.004693065396736529
KKTKKKRA	8	Unmodified	_KKTKKKRA_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ARHGAP29|p.K371Sfs*12|1|0.32|ENSG00000137962|chr1:94202575-94202575|T/-|frameshift_variant;nc|ENSG00000137962|Q52LW3-2|ARHGAP29	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	494.3253173828125	2	494.342918	986.671283	0.25451	0.00012581	0.47991	0.00023724	0.73442	0.00036305	494.34286748531866	58.641	0.25523	58.641	58.565	58.82	0					6	4	2	0	0	0	0.33593	1	22589	22589		0.6015	0.20078	1	13275000			16873	175	10319	10372	16204	16204					0.17741427459020542
KKTKTIKKKK	10	Unmodified	_KKTKTIKKKK_					0	0	0			REV__ENST00000252699.6_1_19:39220693-39220804:+|nuORF	REV__ENST00000252699.6_1_19:39220693-39220804:+|nuORF	MSMS	HCT116MG_D190212_S1	1	410.9604187011719	3	410.958852	1229.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.535	1	10.535	10.035	11.035	0								0	0	0	0.97116	1	3240	3240		0	0	1		+		16874	14588	10320	10373	16205	16205					0.2489935645000969
KKTTEITK	8	Unmodified	_KKTTEITK_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|150|3|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|150|3|sense	MSMS	HCT116MG_D190212_S1	1	474.788818359375	2	474.78985	947.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.478	1	32.478	31.978	32.978	0								0	0	0	0.8837	1	11986	11986		13.508	0	1		+		16875	16954	10321	10374	16206	16206					0.08926627103028295
KKTVRRKLLK	10	Unmodified	_KKTVRRKLLK_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MSMS	HCT116MG_D190212_S1	1	635.4349975585938	2	635.445706	1268.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.738	1	16.738	16.238	17.238	0								0	0	0	0.95507	1	5653	5653		3.5965	1.9439	1		+		16876	14218	10322	10375	16207	16207					0.25317580918431304
KKVFNKIE	8	Unmodified	_KKVFNKIE_					0	0	0			REV__ENSG00000117593|ENST00000649689|DARS2	REV__ENSG00000117593|ENST00000649689|DARS2	MSMS	HCT116MG_D190212_S3	3	503.3059387207031	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.604	1	51.292	50.792	51.792	-0.31166								0	0	0	0.8837	1	19488	19488		4.756	0.42677	1		+		16877	11619	10323	10376	16208	16208					0.09974923719607887
KKVFVLIM	8	Unmodified	_KKVFVLIM_					0	0	0			REV__tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1	REV__tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	489.3144226074219	2	489.314449	976.614345	-0.024051	-1.1768E-05	0.17032	8.3342E-05	0.14627	7.1574E-05	489.31449230062964	51.837	2.6505	51.492	50.946	53.597	-0.34547					154	50	5	0	0	0	0.87576	1	19857	19857		0.79363	0.79363	1	695170000	+		16878	17799	10324	10377	16209	16209					0.12510243858309877
KKVFVLIM	8	Unmodified	_KKVFVLIM_					0	0	0			REV__tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1	REV__tr|U7STH3|U7STH3_FUSNUMembraneproteinrequiredforcolicinVproductionOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01408PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	489.3146667480469	2	489.314449	976.614345	0.07611	3.7241E-05	0.13683	6.6952E-05	0.21294	0.00010419	489.3143962034688	54.654	1.7195	54.33	53.619	55.338	-0.32349					56	32	2	0	0	0	0.86388	2	20424	20424;20685		2.8892	2.8892	1	3193500	+		16879	17799	10324	10377	16210;16211	16210					0.12510243858309877
KKVIKLPSRS	10	Unmodified	_KKVIKLPSRS_					0	0	0			REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	MULTI-MSMS	HCT116MG_D190212_S2	2	578.3826904296875	2	578.38224	1154.74993	0.48284	0.00027927	0.099754	5.7696E-05	0.58259	0.00033696	578.3821675309341	59.739	1.2307	59.579	59.285	60.516	-0.16012					44	24	3	0	0	0	0.88823	1	23032	23032		1.4819	0.15237	1	29777000	+		16880	10887	10325	10378	16212	16212					0.1787423497346481
KKVILIVVLLL	11	Unmodified	_KKVILIVVLLL_					0	0	0			REV__ENST00000531050.5_1_6:128321419-128718758:-|nuORF	REV__ENST00000531050.5_1_6:128321419-128718758:-|nuORF	MSMS	HCT116MG_D190212_S3	3	625.96435546875	2	625.962335	1249.91012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.48	1	51.168	50.668	51.668	-0.31166								0	0	0	0.96149	1	19438	19438		0.30703	0	1		+		16881	12638	10326	10379	16213	16213					0.2951576991779348
KKVKLKMKKK	10	Unmodified	_KKVKLKMKKK_					0	0	0			REV__ENST00000482655.2_1_13:28008892-28009731:+|nuORF	REV__ENST00000482655.2_1_13:28008892-28009731:+|nuORF	MSMS	HCT116MG_D190212_S1	1	629.9423828125	2	629.941411	1257.86827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.299	1	27.299	26.799	27.799	0								0	0	0	0.96453	1	9900	9900		1.4819	0	1		+		16882	11726	10327	10380	16214	16214					0.24964890957608077
KKVKLNHSL	9	Unmodified	_KKVKLNHSL_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MSMS	HCT116MG_D190212_S1	1	356.2276916503906	3	356.229231	1065.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.109	1	31.109	30.609	31.609	0								0	0	0	0.76954	1	11434	11434		2.4985	1.427	1				16883	2729	10328	10381	16215	16215					0.13565703876543012
KKVKLNHSL	9	Unmodified	_KKVKLNHSL_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MSMS	HCT116MG_D190212_S3	3	356.22760009765625	3	356.229231	1065.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.283	1	51.974	51.474	52.474	-0.30927								0	0	0	0.76875	1	19761	19761		5.2969	2.5617	1				16884	2729	10328	10381	16216	16216					0.13565703876543012
KKVNINTVSS	10	Unmodified	_KKVNINTVSS_					0	0	0			REV__LRRN3|p.I314*|1|0.18|ENSG00000173114|chr7:111123708-111123708|A/-|frameshift_variant	REV__LRRN3|p.I314*|1|0.18|ENSG00000173114|chr7:111123708-111123708|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.3162231445312	2	545.316763	1088.61897	0.59575	0.00032487	-0.25808	-0.00014073	0.33767	0.00018414	545.3164683358575	48.705	1.4181	48.561	47.982	49.4	-0.1437					44	27	2	0	0	0	0.82332	1	18499	18499		10.074	1.9184	1	73584000	+		16885	13417	10329	10382	16217	16217					0.07820799534761136
KKVNRIRIA	9	Unmodified	_KKVNRIRIA_					0	0	0			REV__ABCA6|p.I1144Mfs*6|1|0.11|ENSG00000154262|chr17:69091239-69091240|-/CTTTTCCC|frameshift_variant	REV__ABCA6|p.I1144Mfs*6|1|0.11|ENSG00000154262|chr17:69091239-69091240|-/CTTTTCCC|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	549.3662109375	2	549.366924	1096.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.058	1	49.699	49.199	50.199	-0.35878								0	0	0	0.76967	1	18586	18586		2.0598	0.21551	1		+		16886	9820	10330	10383	16218	16218					0.17480501379077396
KKVRKLLP	8	Unmodified	_KKVRKLLP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S3	3	491.04949951171875	2	491.350212	980.68587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.52	1	13.595	13.095	14.095	0.074899								0	0	0	0.8837	1	4293	4293		0.69038	0	1				16887	4258;9506	10331	10384	16219	16219					0.19475499607187885
KKWKFKPIYHN	11	Unmodified	_KKWKFKPIYHN_					0	0	0		tr|U7SRD6|U7SRD6_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01719PE=3SV=1	tr|U7SRD6|U7SRD6_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01719PE=3SV=1	tr|U7SRD6|U7SRD6_FUSNUProteinTonBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01719PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	496.9552307128906	3	496.95399	1487.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.837	1	52.531	52.031	53.031	-0.30639								0	0	0	0.95976	1	19984	19984		1.2148	0.76031	1				16888	18400	10332	10385	16220	16220					0.11573284301903186
KKWKYYQRIFN	11	Unmodified	_KKWKYYQRIFN_					0	0	0			REV__UBE2U|p.G207R|1|0.28|ENSG00000177414|chr1:64241675-64241675|G/A|missense_variant	REV__UBE2U|p.G207R|1|0.28|ENSG00000177414|chr1:64241675-64241675|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	787.4373779296875	2	787.435535	1572.85652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.019	1	20.019	19.519	20.519	0								0	0	0	0.96121	1	6974	6974		0.30703	0	1		+		16889	18036	10333	10386	16221	16221					0.0930036546797055
KKWMDMSNLPQ	11	Unmodified	_KKWMDMSNLPQ_					0	0	0		RBL1|p.L311Pfs*2|1|0.06|ENSG00000080839|chr20:37062235-37062236|-/GG|frameshift_variant;RBL1|p.L311Sfs*3|1|0.06|ENSG00000080839|chr20:37062237-37062238|-/AACTG|frameshift_variant;nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	RBL1|p.L311Pfs*2|1|0.06|ENSG00000080839|chr20:37062235-37062236|-/GG|frameshift_variant	RBL1|p.L311Pfs*2|1|0.06|ENSG00000080839|chr20:37062235-37062236|-/GG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	689.8381958007812	2	689.336315	1376.65808	0.73698	0.00050803	-0.53285	-0.00036731	0.20413	0.00014071	689.3358116502994	21.548	0.72695	21.33	20.958	21.685	-0.21832					23	13	3	0	0	0	0.74191	1	7468	7468		6.1918	2.9105	1	3285700			16890	1402	10334	10387	16222	16222					-0.015185594975264394
KKWRGMKWKKW	11	Unmodified	_KKWRGMKWKKW_					0	0	0		KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	521.9855346679688	3	521.302736	1560.88638	0.4836	0.0002521	1.3576	0.0007077	1.8412	0.0009598	521.6380175421489	55.138	0.30528	55.138	54.892	55.197	0					6	5	2	0	0	0	0.36627	1	21181	21181		0.50596	0.4226	1	6970300			16891	1080	10335	10388	16223	16223					0.12837025932299184
KKYKIKILEIK	11	Unmodified	_KKYKIKILEIK_					0	0	0		tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	702.470458984375	2	702.471055	1402.92756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.869	1	59.709	59.209	60.209	-0.16012								0	0	0	0.96208	1	23159	23159		0	0	1				16892	18442	10336	10389	16224	16224					0.24221065452775292
KKYKIKILEIK	11	Unmodified	_KKYKIKILEIK_					0	0	0		tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	702.4712524414062	2	702.471055	1402.92756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.902	1	59.742	59.242	60.242	-0.16012								0	0	0	0.96208	1	23172	23172		0	0	1				16893	18442	10336	10389	16225	16225					0.24221065452775292
KKYKIKILEIK	11	Unmodified	_KKYKIKILEIK_					0	0	0		tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	702.470947265625	2	702.471055	1402.92756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.039	1	59.767	59.267	60.267	-0.27156								0	0	0	0.96208	1	22610	22610		0	0	1				16894	18442	10336	10389	16226	16226					0.24221065452775292
KKYKKKRSKK	10	Unmodified	_KKYKKKRSKK_					0	0	0		NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant;ENST00000477789.5_1_X:119059185-119070773:-|nuORF;ENSG00000101882|ENST00000371410|NKAP	NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant	NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	441.2974548339844	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0257	1	9.0257	8.5257	9.5257	0								0	0	0	0.97054	1	2731	2731		0.13989	0	1				16895	1812	10337	10390	16227	16227					0.22417277055819795
KKYKKKRSKK	10	Unmodified	_KKYKKKRSKK_					0	0	0		NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant;ENST00000477789.5_1_X:119059185-119070773:-|nuORF;ENSG00000101882|ENST00000371410|NKAP	NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant	NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	441.2972106933594	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6532	1	9.4435	8.9435	9.9435	-0.20971								0	0	0	0.97054	1	2956	2956		0.13989	0	1				16896	1812	10337	10390	16228	16228					0.22417277055819795
KKYKKKRSKK	10	Unmodified	_KKYKKKRSKK_					0	0	0		NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant;ENST00000477789.5_1_X:119059185-119070773:-|nuORF;ENSG00000101882|ENST00000371410|NKAP	NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant	NKAP|p.E286Vfs*3|1|0.04|ENSG00000101882|chrX:119932004-119932005|-/AACTTACC|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	441.2978210449219	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.029	1	11.855	11.355	12.355	-0.17441								0	0	0	0.97054	1	3721	3721		0.13989	0	1				16897	1812	10337	10390	16229	16229					0.22417277055819795
KKYKRLGRLR	10	Unmodified	_KKYKRLGRLR_					0	0	0			REV__nc|ENSG00000154678|Q14123-2|PDE1C	REV__nc|ENSG00000154678|Q14123-2|PDE1C	MSMS	HCT116MG_D190212_S2	2	659.3903198242188	2	659.43313	1316.85171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.413	1	15.086	14.586	15.586	-0.32684								0	0	0	0.96937	1	5119	5119		0.40072	0	1		+		16898	12683	10338	10391	16230	16230					0.20595526115880602
KLAEGVLDV	9	Unmodified	_KLAEGVLDV_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	HCT116MG_D190212_S2	2	472.2760925292969	2	472.276575	942.538597	0.15788	7.4561E-05	-0.34505	-0.00016296	-0.18717	-8.8398E-05	472.27626397009703	44.015	0.3593	43.936	43.71	44.069	-0.078373					12	6	3	0	0	0	0.2682	1	16710	16710		34.102	9.4286	1	41776000			16899	5722	10339	10392	16231	16231					0.0650293821172454
KLAEGVLDV	9	Unmodified	_KLAEGVLDV_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	472.276575	942.538597	0.38888	0.00018366	-1.5033	-0.00070996	-1.1144	-0.00052631	472.27562838478264	44.3	0.36322	43.993	43.708	44.071	-0.30759	0.028156	-0.00070255	NaN	34.102	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4240700			16900	5722	10339	10392							0.0650293821172454
KLAEIVKQV	9	Unmodified	_KLAEIVKQV_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-SECPEP	HCT116MG_D190212_S2	2	514.7348022460938	2	514.329142	1026.64373	0.3016	0.00015512	-0.019752	-1.0159E-05	0.28185	0.00014496	514.3290522605905	32.789	0.20789	32.578	32.43	32.638	-0.21135					5	3	2	0	0	0	0.12796	1	12146	12146		51.415	20.147	1	16026000			16901	1507	10340	10393	16232	16232					0.13147479408144136
KLAEIVKQV	9	Unmodified	_KLAEIVKQV_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-MATCH	HCT116MG_D190212_S3	3		2	514.329142	1026.64373	0.46087	0.00023704	-0.31545	-0.00016224	0.14542	7.4793E-05	514.3291529875165	32.798	0.15645	32.513	32.404	32.56	-0.28511	-0.032213	-0.00018097	NaN	51.415	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1673200			16902	1507	10340	10393							0.13147479408144136
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	HCT116MG_D190212_S3	3	487.7796325683594	2	487.779482	973.544411	0.12102	5.9031E-05	0.49931	0.00024355	0.62033	0.00030258	487.7796082859802	19.56	0.20846	19.62	19.49	19.698	0.05983					5	3	2	0	0	0	0.043159	1	6727	6727		78.06	10.222	1	4481900			16903	1578	10341	10394	16233	16233					0.056580367233777906
KLAKAGKN	8	Unmodified	_KLAKAGKN_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000484328.1_1_2:232327850-232329064:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S1	1	415.266357421875	2	415.266345	828.518136	0.03587	1.4896E-05	0.096956	4.0262E-05	0.13283	5.5158E-05	415.2662944748161	15.024	0.15621	15.024	14.91	15.066	0					6	2	3	0	0	0	0.14283	1	4973	4973		85.272	49.228	1	4283000			16904	2442	10342	10395	16234	16234					0.09701812342564153
KLAPPPKKA	9	Unmodified	_KLAPPPKKA_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MSMS	HCT116MG_D190212_S2	2	475.31292724609375	2	475.313295	948.612037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.934	1	15.599	15.099	16.099	-0.33451								0	0	0	0.76655	1	5329	5329		13.042	2.2185	1				16905	4549	10343	10396	16235	16235					0.1356753144484628
KLAQAQCIAD	10	Unmodified	_KLAQAQCIAD_					0	0	0			REV__ENSG00000188306|ENST00000340806|LRRIQ4	REV__ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-SECPEP	HCT116MG_D190212_S3	3	530.2770385742188	2	530.776416	1059.53828	0.61539	0.00032663	0.53171	0.00028222	1.1471	0.00060885	531.2769183598817	29.602	0.36767	29.365	29.187	29.555	-0.23655					9	6	2	0	0	0	0.29999	1	10795	10795		18.146	6.5061	1	5621700	+		16906	13949	10344	10397	16236	16236					0.010891952201973254
KLCALARWP	9	Unmodified	_KLCALARWP_					0	0	0			REV__ENST00000319394.7_1_1:27633135-27633324:+|nuORF	REV__ENST00000319394.7_1_1:27633135-27633324:+|nuORF	MSMS	HCT116MG_D190212_S4	4	529.2818603515625	2	529.302404	1056.59026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.535	1	49.173	48.673	49.673	-0.36213								0	0	0	0.76818	1	18377	18377		7.2892	0	1		+		16907	14879	10345	10398	16237	16237					0.06422403424630829
KLCEGFNEV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EGFNEV_	KLC(1)EGFNEV		KLC(100)EGFNEV		0	1	0		ENST00000454346.1_1_1:15931445-15931535:+|nuORF;ENST00000429873.1_1_13:28681921-28682011:+|nuORF;ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000454346.1_1_1:15931445-15931535:+|nuORF	ENST00000454346.1_1_1:15931445-15931535:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	548.2608032226562	2	548.260599	1094.50665	0.47024	0.00025781	-0.080215	-4.3979E-05	0.39003	0.00021384	548.2604659086538	36.339	0.26792	36.339	36.202	36.47	0					7	4	2	0	0	0	0.016744	1	13549	13549		99.755	27.833	1	29126000			16908	2062	10346	10399	16238	16238	9				-0.03682797533747362
KLCEGFNEV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EGFNEV_	KLC(1)EGFNEV		KLC(110)EGFNEV		0	1	0		ENST00000454346.1_1_1:15931445-15931535:+|nuORF;ENST00000429873.1_1_13:28681921-28682011:+|nuORF;ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000454346.1_1_1:15931445-15931535:+|nuORF	ENST00000454346.1_1_1:15931445-15931535:+|nuORF	MSMS	HCT116MG_D190212_S2	2	548.260498046875	2	548.260599	1094.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.433	1	36.305	35.805	36.805	-0.12799								0	0	0	0.007493	1	13624	13624		110.67	38.752	1				16909	2062	10346	10399	16239	16239	9				-0.03682797533747362
KLCGGGIR	8	Unmodified	_KLCGGGIR_					0	0	0		ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;ADAMTS9|p.S1884Ffs*2|1|0.35|ENSG00000163638|chr3:64533233-64533233|G/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9	ENST00000482490.5_1_3:64536549-64672246:-|nuORF	ENST00000482490.5_1_3:64536549-64672246:-|nuORF	MSMS	HCT116MG_D190212_S4	4	402.2332763671875	2	402.231448	802.448342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.886	1	29.529	29.029	30.029	-0.3571								0	0	0	0.8837	1	10811	10811		2.0598	1.2661	1				16910	50	10347	10400	16240	16240					0.03921610402301212
KLDAFVEGV	9	Unmodified	_KLDAFVEGV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	HCT116MG_D190212_S4	4	489.26885986328125	2	489.26875	976.522947	0.014644	7.1648E-06	0.20329	9.9463E-05	0.21793	0.00010663	489.2687722634485	45.334	0.25932	44.961	44.78	45.039	-0.37266					8	4	2	0	0	0	0.034046	1	16704	16704		82.529	6.7685	1	10740000			16911	4240	10348	10401	16241	16241					0.03374651694673503
KLDDLHTLY	9	Unmodified	_KLDDLHTLY_					0	0	0		nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC	nc|ENSG00000047932|Q9HD26-2|GOPC	nc|ENSG00000047932|Q9HD26-2|GOPC	MULTI-MSMS	HCT116MG_D190212_S1	1	559.297607421875	2	559.298039	1116.58152	0.20155	0.00011273	0.21955	0.0001228	0.4211	0.00023552	559.298013308861	39.423	0.34597	39.423	39.259	39.605	0					12	6	3	0	0	0	4.914E-08	1	14791	14791		223.81	152.68	1	44385000			16912	1031	10349	10402	16242	16242					0.027897082691424657
KLDDLHTLY	9	Unmodified	_KLDDLHTLY_					0	0	0		nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC	nc|ENSG00000047932|Q9HD26-2|GOPC	nc|ENSG00000047932|Q9HD26-2|GOPC	MULTI-MSMS	HCT116MG_D190212_S2	2	559.296875	2	559.298039	1116.58152	0.47011	0.00026293	0.5759	0.0003221	1.046	0.00058503	559.2979012028773	39.445	0.35435	39.367	39.174	39.528	-0.077835					12	6	3	0	0	0	8.1714E-11	1	14846	14846		240.48	144.12	1	75528000			16913	1031	10349	10402	16243	16243					0.027897082691424657
KLDDTYIKA	9	Unmodified	_KLDDTYIKA_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7924194335938	2	533.792589	1065.57063	0.2905	0.00015507	-0.49212	-0.00026269	-0.20162	-0.00010762	533.7920653395587	30.074	0.35746	30.074	29.789	30.146	0					9	6	2	0	0	0	0.0039465	1	11022	11022		151.48	58.827	1	10221000			16914	4993	10350	10403	16244	16244					0.04046305894826219
KLDDTYIKA	9	Unmodified	_KLDDTYIKA_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;DNAJC7|p.N369Mfs*6|3|0.26|ENSG00000168259|chr17:41982380-41982380|T/-|frameshift_variant	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7918090820312	2	533.792589	1065.57063	0.16863	9.0016E-05	-0.2347	-0.00012528	-0.066065	-3.5265E-05	533.7924377384869	30.44	0.20504	30.156	30.028	30.233	-0.28453					6	3	2	0	0	0	0.0037246	1	11195	11195		154.75	65.352	1	67791000			16915	4993	10350	10403	16245	16245					0.04046305894826219
KLDDYYHY	8	Unmodified	_KLDDYYHY_					0	0	0			REV__ENSG00000113532|ENST00000231461|ST8SIA4	REV__ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-SECPEP	HCT116MG_D190212_S2	2	558.319091796875	2	558.753464	1115.49238	0.5505	0.0003076	-1.5238	-0.00085144	-0.97332	-0.00054384	558.7529670634929	43.844	0.41111	43.765	43.556	43.967	-0.078373					12	7	3	0	0	0	0.31097	1	16565	16565		11.64	5.4345	1	25113000	+		16916	11486	10351	10404	16246	16246					-0.0607512669037078
KLDEDVKMI	9	Unmodified	_KLDEDVKMI_					0	0	0		ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000437925.1_1_9:89699796-89699949:-|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	545.794189453125	2	545.794275	1089.574	0.42326	0.00023101	-0.2159	-0.00011784	0.20736	0.00011318	545.794175262272	36.46	0.26225	36.46	36.312	36.574	0					10	4	3	0	0	0	0.0052024	1	13604	13604		135.86	61.664	1	21133000			16917	1169	10352	10405	16247	16247					0.0327923267720962
KLDEDVKMI	9	Unmodified	_KLDEDVKMI_					0	0	0		ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000437925.1_1_9:89699796-89699949:-|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	ENST00000467203.5_1_1:41157373-41224011:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7944946289062	2	545.794275	1089.574	0.60049	0.00032774	-0.0044583	-2.4333E-06	0.59603	0.00032531	545.7942720184567	36.484	0.46625	36.356	36.174	36.64	-0.12799					14	8	3	0	0	0	0.0046822	1	13649	13649		140.63	47.467	1	62542000			16918	1169	10352	10405	16248	16248					0.0327923267720962
KLDGSRLIKV	10	Unmodified	_KLDGSRLIKV_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MSMS	HCT116MG_D190212_S1	1	564.8585815429688	2	564.858598	1127.70264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.08	1	33.08	32.58	33.58	0								0	0	0	0.80437	1	12229	12229		28.234	5.5755	1				16919	5218	10353	10406	16249	16249					0.14389955702449697
KLDGSRLIKV	10	Unmodified	_KLDGSRLIKV_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	HCT116MG_D190212_S2	2	564.8588256835938	2	564.858598	1127.70264	0.7587	0.00042856	0.23887	0.00013493	0.99757	0.00056349	564.8585317443136	33.29	0.25958	33.097	32.914	33.174	-0.19297					8	4	2	0	0	0	0.014951	1	12347	12347		132.13	38.969	1	47559000			16920	5218	10353	10406	16250	16250					0.14389955702449697
KLDGSRLIKV	10	Unmodified	_KLDGSRLIKV_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	HCT116MG_D190212_S2	2	376.9081115722656	3	376.908157	1127.70264	0.13076	4.9285E-05	0.1942	7.3195E-05	0.32496	0.00012248	376.9082084926729	33.282	0.25958	33.089	32.914	33.174	-0.19297					9	4	3	0	0	0	0.040924	1	12348	12348		82.445	23.432	1	47789000			16921	5218	10353	10406	16251	16251					0.14389955702449697
KLDGSRLIKV	10	Unmodified	_KLDGSRLIKV_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-SECPEP	HCT116MG_D190212_S3	3	564.3229370117188	2	564.858598	1127.70264	0.49913	0.00028194	0.48153	0.000272	0.98067	0.00055394	564.8585898346294	33.393	0.13672	33.103	33.011	33.148	-0.29013					4	2	2	0	0	0	0.30961	1	12251	12251		6.1918	3.3026	1	3158100			16922	5218	10353	10406	16252	16252					0.14389955702449697
KLDGSRLIKV	10	Unmodified	_KLDGSRLIKV_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	376.908157	1127.70264	0.090288	3.403E-05	-0.0086556	-3.2624E-06	0.081633	3.0768E-05	376.9080372719915	33.042	0.20187	33.042	32.887	33.089	0	-0.044828	-0.00012372	NaN	82.445	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7267100			16923	5218	10353	10406							0.14389955702449697
KLDGSRLIKV	10	Unmodified	_KLDGSRLIKV_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MATCH	HCT116MG_D190212_S4	4		3	376.908157	1127.70264	0.319	0.00012023	-0.36065	-0.00013593	-0.041657	-1.5701E-05	376.9078059971329	33.514	0.11752	33.13	33.052	33.17	-0.3834	0.043138	-0.00052173	NaN	82.445	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1296100			16924	5218	10353	10406							0.14389955702449697
KLDHVVTII	9	Unmodified	_KLDHVVTII_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	519.3209838867188	2	519.321317	1036.62808	0.25275	0.00013126	-0.28937	-0.00015028	-0.036624	-1.902E-05	519.3211789667455	42.197	0.31173	42.197	42.019	42.33	0					13	5	3	0	0	0	0.10244	1	15912	15912		57.722	1.5449	1	58575000			16925	2936	10354	10407	16253	16253					0.11123192891091094
KLDHVVTII	9	Unmodified	_KLDHVVTII_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	519.321533203125	2	519.321317	1036.62808	0.25994	0.00013499	-0.13732	-7.1312E-05	0.12262	6.368E-05	519.3212604121935	42.21	0.41385	42.142	41.913	42.327	-0.068199					17	7	4	0	0	0	0.026999	1	15952	15952		89.401	0.44686	1	184010000			16926	2936	10354	10407	16254	16254					0.11123192891091094
KLDLYNLRP	9	Unmodified	_KLDLYNLRP_					0	0	0			REV__ENSG00000176601|ENST00000392915|MAP3K19	REV__ENSG00000176601|ENST00000392915|MAP3K19	MULTI-SECPEP	HCT116MG_D190212_S2	2	565.8612060546875	2	566.329673	1130.64479	0.33977	0.00019242	-0.43888	-0.00024855	-0.099106	-5.6126E-05	566.3292684175161	35.503	0.25251	35.361	35.237	35.489	-0.14245					6	4	2	0	0	0	0.19936	1	13236	13236		27.629	3.6082	1	21670000	+		16927	13547	10355	10408	16255	16255					0.08469693777033172
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	HCT116MG_D190212_S1	1	516.2595825195312	2	515.798206	1029.58186	0.38916	0.00020073	-1.109	-0.00057204	-0.71988	-0.00037131	515.7974533484386	21.776	0.15612	21.776	21.646	21.802	0					4	2	2	0	0	0	0.1535	1	7649	7649		47.594	13.193	1	2017200			16928	2563	10356	10409	16256	16256					0.06825127989009161
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7982788085938	2	515.798206	1029.58186	0.18724	9.6581E-05	-0.01137	-5.8645E-06	0.17588	9.0716E-05	515.7982216423593	21.543	0.26464	21.562	21.43	21.694	0.018446					7	4	2	0	0	0	0.012343	1	7516	7516		107.56	34.595	1	8008700			16929	2563	10356	10409	16257	16257					0.06825127989009161
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7984008789062	2	515.798206	1029.58186	0.28253	0.00014573	-0.066367	-3.4232E-05	0.21617	0.0001115	515.7982525548824	21.9	0.2598	21.682	21.581	21.841	-0.21832					5	4	2	0	0	0	0.07649	1	7604	7604		62.869	13.314	1	1713700			16930	2563	10356	10409	16258	16258					0.06825127989009161
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MATCH	HCT116MG_D190212_S2	2		2	515.798206	1029.58186	0.39708	0.00020481	-0.19377	-9.9945E-05	0.20331	0.00010487	515.7984102333584	22.336	0.15528	21.951	21.843	21.999	-0.3852	0.20818	-0.00014248	NaN	107.56	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11288000			16931	2563	10356	10409							0.06825127989009161
KLDQDLNEV	9	Unmodified	_KLDQDLNEV_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	HCT116MG_D190212_S2	2	537.2771606445312	2	537.277303	1072.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.035	1	32.824	32.324	33.324	-0.21135								0	0	0	0.0058398	1	12243	12243		114.65	22.158	1				16932	2145	10357	10410	16259	16259					0.006685275098107013
KLDQQTLR	8	Unmodified	_KLDQQTLR_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	HCT116MG_D190212_S2	2	501.29034423828125	2	501.290548	1000.56654	0.58738	0.00029445	0.012854	6.4435E-06	0.60023	0.00030089	501.2903552549938	46.311	2.0088	46.199	45.7	47.709	-0.11122					75	38	4	0	0	0	0.57666	1	17762	17762		34.402	6.7729	1	35217000			16933	2492	10358	10411	16260	16260					0.06628261191804086
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	HCT116MG_D190212_S1	1	472.7271423339844	2	472.756007	943.497461	0.035744	1.6898E-05	0.2957	0.00013979	0.33144	0.00015669	472.75587843918504	32.248	0.41649	32.248	32.118	32.534	0					14	7	3	0	0	0	0.11363	2	11890	11890;11897		55.503	9.4818	1	83122000			16934	5847	10359	10412	16261;16262	16261					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	HCT116MG_D190212_S1	1	944.5056762695312	1	944.504737	943.497461	0.6766	0.00063905	-0.090451	-8.5432E-05	0.58615	0.00055362	944.5046068032137	32.248	0.26006	32.248	32.118	32.378	0					10	4	3	0	0	0	0.0064416	1	11901	11901		125.04	59.803	1	38702000			16935	5847	10359	10412	16263	16263					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	HCT116MG_D190212_S2	2	472.7560119628906	2	472.756007	943.497461	0.12226	5.7797E-05	0.04801	2.2697E-05	0.17026	8.0494E-05	472.7559142365172	32.51	0.4691	32.28	32.098	32.567	-0.23009					19	8	3	0	0	0	0.034046	1	12032	12032		82.529	18.293	1	373900000			16936	5847	10359	10412	16264	16264					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	HCT116MG_D190212_S2	2	944.5054321289062	1	944.504737	943.497461	0.5388	0.0005089	-0.22989	-0.00021713	0.30891	0.00029177	944.5044520884144	32.51	0.36458	32.28	32.098	32.463	-0.23009					15	6	3	0	0	0	0.0051419	1	12033	12033		136.39	61.463	1	180580000			16937	5847	10359	10412	16265	16265					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	HCT116MG_D190212_S3	3	472.7559509277344	2	472.756007	943.497461	0.30381	0.00014363	0.059789	2.8266E-05	0.3636	0.00017189	472.75583256024464	32.593	0.46889	32.31	32.094	32.563	-0.28276					13	8	2	0	0	0	0.071914	1	11959	11959		63.961	21.866	1	38990000			16938	5847	10359	10412	16266	16266					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	HCT116MG_D190212_S3	3	944.5043334960938	1	944.504737	943.497461	0.75334	0.00071154	-0.11586	-0.00010943	0.63748	0.0006021	944.5043198520816	32.597	0.31234	32.314	32.145	32.458	-0.28336					7	5	2	0	0	0	0.01386	1	11971	11971		103.82	38.589	1	4096000			16939	5847	10359	10412	16267	16267					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MSMS	HCT116MG_D190212_S4	4	472.75592041015625	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.728	1	32.348	31.848	32.848	-0.37924								0	0	0	0.62613	1	11931	11931		22.658	5.5452	1				16940	5847	10359	10412	16268	16268					0.023451771722420744
KLDVGNIVL	9	Unmodified	_KLDVGNIVL_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	HCT116MG_D190212_S2	2	485.7998962402344	2	485.800217	969.585882	0.17472	8.488E-05	-0.36514	-0.00017738	-0.19042	-9.2505E-05	485.79992869958215	51.376	0.30889	51.197	51.069	51.378	-0.17868					7	5	2	0	0	0	0.066823	1	19748	19748		66.457	3.884	1	11910000			16941	1885	10360	10413	16269	16269					0.09987217482705546
KLEAFLAFS	9	Unmodified	_KLEAFLAFS_					0	0	0		SLC11A2|p.F211Lfs*19|4|0.43|ENSG00000110911|chr12:50999216-50999216|A/-|frameshift_variant	SLC11A2|p.F211Lfs*19|4|0.43|ENSG00000110911|chr12:50999216-50999216|A/-|frameshift_variant	SLC11A2|p.F211Lfs*19|4|0.43|ENSG00000110911|chr12:50999216-50999216|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	513.2872924804688	2	513.286943	1024.55933	0.49063	0.00025183	0.378	0.00019402	0.86863	0.00044586	513.287082573093	54.561	0.20309	54.561	54.434	54.637	0					6	3	2	0	0	0	0.66792	1	20955	20955		7.2892	0.56607	1	60079000			16942	18153	10361	10414	16270	16270					0.04803528591378381
KLEDKIEI	8	Unmodified	_KLEDKIEI_					0	0	0			REV__nc|nan|Q7Z6I8-2|C5orf24	REV__nc|nan|Q7Z6I8-2|C5orf24	MULTI-MSMS	HCT116MG_D190212_S1	1	494.7911682128906	2	494.289682	986.564812	0.40852	0.00020193	-0.95423	-0.00047167	-0.54572	-0.00026974	494.2891357434535	34.568	0.25979	34.568	34.389	34.649	0					9	4	3	0	0	0	0.047269	1	12830	12830		126.57	8.4975	1	16454000	+		16943	13698	10362	10415	16271	16271					0.07099207383191697
KLEDLRKQRL	10	Unmodified	_KLEDLRKQRL_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	433.935546875	3	433.601616	1297.78302	0.13605	5.8993E-05	-1.2512	-0.0005425	-1.1151	-0.00048351	433.93553253893316	53.694	0.20665	53.694	53.565	53.771	0					5	3	2	0	0	0	0.88886	1	20601	20601		1.3296	0	1	22348000			16944	3004	10363	10416	16272	16272					0.14603817025499666
KLEEIIHQI	9	Unmodified	_KLEEIIHQI_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	561.8297119140625	2	561.829506	1121.64446	0.35667	0.00020039	0.34601	0.0001944	0.70268	0.00039479	561.8294981243887	41.107	0.19972	41.107	40.986	41.185	0					8	3	3	0	0	0	1.3738E-20	1	15485	15485		275.29	57.091	1	29200000			16945	2489	10364	10417	16273	16273					0.08850274057203933
KLEEIIHQI	9	Unmodified	_KLEEIIHQI_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	561.830078125	2	561.829506	1121.64446	0.28683	0.00016115	0.94564	0.00053129	1.2325	0.00069244	561.829928460411	41.14	0.25745	41.071	40.882	41.14	-0.068199					9	4	3	0	0	0	0.0029864	1	15536	15536		181.69	45.299	1	30311000			16946	2489	10364	10417	16274	16274					0.08850274057203933
KLEELKQRLDR	11	Unmodified	_KLEELKQRLDR_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-7|WWC2	REV__nc|ENSG00000151718|Q6AWC2-7|WWC2	MULTI-SECPEP	HCT116MG_D190212_S1	1	477.2641296386719	3	476.615814	1426.82561	0.23046	0.00010984	-0.88516	-0.00042188	-0.6547	-0.00031204	476.6154879541943	52.613	0.51403	52.613	52.125	52.639	0					11	9	2	0	0	0	0.36606	1	20060	20060		2.2527	0.92309	1	16009000	+		16947	12609	10365	10418	16275	16275					0.1292716736309103
KLEEVRKRLM	10	Unmodified	_KLEEVRKRLM_					0	0	0			REV__ENSG00000135482|ENST00000257940|ZC3H10	REV__ENSG00000135482|ENST00000257940|ZC3H10	MSMS	HCT116MG_D190212_S4	4	651.3920288085938	2	651.389739	1300.76493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.529	1	43.154	42.654	43.654	-0.37433								0	0	0	0.95648	1	16003	16003		3.2813	1.6287	1		+		16948	12094	10366	10419	16276	16276					0.12657358779165406
KLEITAKT	8	Unmodified	_KLEITAKT_					0	0	0			REV__nc|ENSG00000127616|P51532-5|SMARCA4	REV__nc|ENSG00000127616|P51532-5|SMARCA4	MSMS	HCT116MG_D190212_S4	4	452.2783508300781	2	452.279118	902.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.348	1	47.98	47.48	48.48	-0.36728								0	0	0	0.8837	1	17903	17903		2.0598	0	1		+		16949	11861	10367	10420	16277	16277					0.0885124207430863
KLEKAMKQLVK	11	Unmodified	_KLEKAMKQLVK_					0	0	0		nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	HCT116MG_D190212_S2	2	439.27691650390625	3	439.275852	1314.80573	0.10537	4.6289E-05	1.5091	0.00066289	1.6144	0.00070918	439.27672298991024	54.562	0.61343	54.372	54.048	54.661	-0.1894					19	11	3	0	0	0	0.74191	1	20961	20961		2.2527	0.16876	1	29164000			16950	9464	10368	10421	16278	16278					0.16091700098741057
KLEKICTY	8	Unmodified	_KLEKICTY_					0	0	0		tr|U7SV72|U7SV72_FUSNUADP-ribosepyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01152PE=4SV=1	tr|U7SV72|U7SV72_FUSNUADP-ribosepyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01152PE=4SV=1	tr|U7SV72|U7SV72_FUSNUADP-ribosepyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01152PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	499.27484130859375	2	499.272978	996.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.369	1	34.075	33.575	34.575	-0.29419								0	0	0	0.8837	1	12648	12648		9.3474	0	1				16951	18490	10369	10422	16279	16279					0.03299882339626947
KLEKKSKKY	9	Unmodified	_KLEKKSKKY_					0	0	0			REV__tr|U7SZE0|U7SZE0_FUSNUArsenatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00789PE=3SV=1	REV__tr|U7SZE0|U7SZE0_FUSNUArsenatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00789PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	576.360107421875	2	576.360973	1150.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.762	1	41.459	40.959	41.959	-0.30257								0	0	0	0.76902	1	15537	15537		4.3292	0.38484	1		+		16952	17876	10370	10423	16280	16280					0.13806839845233299
KLEKLFRRLT	10	Unmodified	_KLEKLFRRLT_					0	0	0			REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|9|2|sense	REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|9|2|sense	MSMS	HCT116MG_D190212_S3	3	652.824462890625	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.207	1	40.905	40.405	41.405	-0.30185								0	0	0	0.96453	1	15322	15322		1.4819	0	1		+		16953	16964	10371	10424	16281	16281					0.17429595410544607
KLELGVLGQ	9	Unmodified	_KLELGVLGQ_					0	0	0			REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	478.79241943359375	2	478.792392	955.570232	-0.042278	-2.0242E-05	0.19879	9.5179E-05	0.15651	7.4937E-05	478.79252945483796	39.943	0.20824	39.943	39.813	40.021	0					6	3	2	0	0	0	0.26031	1	15017	15017		34.932	0.53034	1	6829800	+		16954	14418	10372	10425	16282	16282					0.09066930965673237
KLELVARRKWK	11	Unmodified	_KLELVARRKWK_					0	0	0		ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	ENSG00000146426|ENST00000682666|TIAM2	ENSG00000146426|ENST00000682666|TIAM2	MSMS	HCT116MG_D190212_S3	3	476.3064880371094	3	476.305022	1425.89324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.104	1	53.805	53.305	54.305	-0.29946								0	0	0	0.96003	1	20493	20493		0.36667	0.22678	1				16955	3949	10373	10426	16283	16283					0.1973266208451605
KLETLRLKRAE	11	Unmodified	_KLETLRLKRAE_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74595806-74598423:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S1	1	678.9188232421875	2	678.919718	1355.82488	0.78426	0.00053245	-0.51407	-0.00034901	0.27019	0.00018344	678.9188049732734	55.684	0.20592	55.684	55.554	55.76	0					8	3	3	0	0	0	0.74191	1	21406	21406		4.897	4.4963	1	165740000			16956	6354	10374	10427	16284	16284					0.1612037271402187
KLEVRNVKIGW	11	Unmodified	_KLEVRNVKIGW_					0	0	0			REV__tr|U7T5A0|U7T5A0_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00179PE=3SV=1	REV__tr|U7T5A0|U7T5A0_FUSNUBand7domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00179PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	671.9029541015625	2	671.403704	1340.79285	0.76499	0.00051362	-1.2925	-0.00086779	-0.52751	-0.00035417	671.4009138602845	55.903	0.97646	55.903	55.452	56.428	0					37	18	4	0	0	0	0.36528	1	21552	21552		4.897	3.5675	1	16901000	+		16957	17982	10375	10428	16285	16285					0.13609005030866683
KLFDRPQEL	9	Unmodified	_KLFDRPQEL_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant;ENST00000494124.2_1_9:19316810-19337609:+|nuORF	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MSMS	HCT116MG_D190212_S1	1	573.3199462890625	2	573.319306	1144.62406	0.545	0.00031246	-0.13565	-7.7773E-05	0.40935	0.00023469	573.3197688171057	37.223	0.20679	37.223	37.094	37.301	0					5	3	2	0	0	0	0.048237	1	13924	13924		75.571	12.998	1	17284000			16958	3463	10376	10429	16286	16286					0.05753103397364612
KLFDRSVDL	9	Unmodified	_KLFDRSVDL_					0	0	0		ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF;ENSG00000267796|ENST00000301159|LIN37	ENST00000587108.5_1_19:36243860-36245221:+|nuORF	ENST00000587108.5_1_19:36243860-36245221:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	546.80615234375	2	546.806031	1091.59751	0.21481	0.00011746	-0.50084	-0.00027386	-0.28602	-0.0001564	546.8059596551299	40.768	0.25497	40.768	40.591	40.846	0					9	4	3	0	0	0	0.12421	1	15337	15337		53.404	11.564	1	15365000			16959	6650	10377	10430	16287	16287					0.05537414506034111
KLFDRSVDL	9	Unmodified	_KLFDRSVDL_					0	0	0		ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF;ENSG00000267796|ENST00000301159|LIN37	ENST00000587108.5_1_19:36243860-36245221:+|nuORF	ENST00000587108.5_1_19:36243860-36245221:+|nuORF	MSMS	HCT116MG_D190212_S2	2	546.806396484375	2	546.806031	1091.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.773	1	40.704	40.204	41.204	-0.069626								0	0	0	0.015973	1	15386	15386		97.741	37.667	1				16960	6650	10377	10430	16288	16288					0.05537414506034111
KLFEEIREI	9	Unmodified	_KLFEEIREI_					0	0	0		nc|ENSG00000166046|Q8N4U5-2|TCP11L2;ENSG00000166046|ENST00000299045|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	MSMS	HCT116MG_D190212_S1	1	588.8350830078125	2	588.834788	1175.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.831	1	44.831	44.331	45.331	0								0	0	0	0.73401	1	16970	16970		17.443	9.2871	1				16961	4817	10378	10431	16289	16289					0.07422256711629416
KLFEFMHET	9	Unmodified	_KLFEFMHET_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S1	1	591.2880859375	2	591.286617	1180.55868	0.53669	0.00031734	-0.25846	-0.00015283	0.27822	0.00016451	591.286462026829	44.614	0.26082	44.614	44.464	44.724	0					7	4	2	0	0	0	0.0034469	1	16894	16894		179.17	114.94	1	47233000			16962	1425	10379	10432	16290	16290					-0.02437634119996801
KLFEFMHET	9	Unmodified	_KLFEFMHET_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S2	2	591.28662109375	2	591.286617	1180.55868	0.84699	0.00050081	-0.27059	-0.00015999	0.5764	0.00034082	591.2862935870729	44.62	0.31433	44.535	44.325	44.639	-0.084797					7	5	2	0	0	0	0.33364	1	16975	16975		27.223	4.487	1	13976000			16963	1425	10379	10432	16291	16291					-0.02437634119996801
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant;FAR2|p.K443Nfs*4|2|0.35|ENSG00000064763|chr12:29332666-29332666|A/-|frameshift_variant;ENSG00000064763|ENST00000536681|FAR2	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	373.8970947265625	3	373.897258	1118.66995	-0.014419	-5.3912E-06	0.2383	8.9099E-05	0.22388	8.3708E-05	373.8971957480857	27.995	0.15614	27.995	27.904	28.06	0					4	2	2	0	0	0	0.21959	1	10205	10205		39.213	9.7758	1	5859600			16964	1143	10380	10433	16292	16292					0.11535748579603933
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant;FAR2|p.K443Nfs*4|2|0.35|ENSG00000064763|chr12:29332666-29332666|A/-|frameshift_variant;ENSG00000064763|ENST00000536681|FAR2	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	560.342529296875	2	560.342249	1118.66995	0.3793	0.00021254	0.27869	0.00015616	0.65799	0.0003687	560.3422755987247	28.472	0.20609	28.142	28.029	28.236	-0.32987					5	3	2	0	0	0	0.0074628	1	10403	10403		139.38	62.553	1	27494000			16965	1143	10380	10433	16293	16293					0.11535748579603933
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant;FAR2|p.K443Nfs*4|2|0.35|ENSG00000064763|chr12:29332666-29332666|A/-|frameshift_variant;ENSG00000064763|ENST00000536681|FAR2	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	373.8975524902344	3	373.897258	1118.66995	-0.21323	-7.9726E-05	0.1463	5.4703E-05	-0.066927	-2.5024E-05	373.8973739622953	28.489	0.20609	28.159	28.029	28.236	-0.32987					7	3	3	0	0	0	0.14268	1	10421	10421		49.742	11.127	1	28710000			16966	1143	10380	10433	16294	16294					0.11535748579603933
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant;FAR2|p.K443Nfs*4|2|0.35|ENSG00000064763|chr12:29332666-29332666|A/-|frameshift_variant;ENSG00000064763|ENST00000536681|FAR2	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	373.8972473144531	3	373.897258	1118.66995	-0.16086	-6.0147E-05	-0.15683	-5.8637E-05	-0.31769	-0.00011878	373.89725486819225	28.29	0.20898	28.084	27.968	28.177	-0.20593					8	3	3	0	0	0	0.27966	1	10257	10257		32.898	9.0967	1	3758500			16967	1143	10380	10433	16295	16295					0.11535748579603933
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant;FAR2|p.K443Nfs*4|2|0.35|ENSG00000064763|chr12:29332666-29332666|A/-|frameshift_variant;ENSG00000064763|ENST00000536681|FAR2	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	560.2185668945312	2	560.342249	1118.66995	0.30363	0.00017014	0.002055	1.1515E-06	0.30569	0.00017129	560.3420737822885	28.304	0.20898	28.098	27.968	28.177	-0.20593					6	3	2	0	0	0	0.2336	1	10248	10248		12.241	0	1	5024400			16968	1143	10380	10433	16296	16296					0.11535748579603933
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant;FAR2|p.K443Nfs*4|2|0.35|ENSG00000064763|chr12:29332666-29332666|A/-|frameshift_variant;ENSG00000064763|ENST00000536681|FAR2	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	560.8033447265625	2	560.342249	1118.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.564	1	28.232	27.732	28.732	-0.33138								0	0	0	0.22433	1	10277	10277		48.073	6.1172	1				16969	1143	10380	10433	16297	16297					0.11535748579603933
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant;FAR2|p.K443Nfs*4|2|0.35|ENSG00000064763|chr12:29332666-29332666|A/-|frameshift_variant;ENSG00000064763|ENST00000536681|FAR2	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	FAR2|p.I329Sfs*49|1|0.35|ENSG00000064763|chr12:29316865-29316865|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	560.342249	1118.66995	0.50446	0.00028267	0.15835	8.8729E-05	0.66281	0.0003714	560.3422586397941	27.982	0.15614	27.982	27.904	28.06	0	-0.091791	-5.4436E-05	NaN	139.38	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4802900			16970	1143	10380	10433							0.11535748579603933
KLFHEVVQA	9	Unmodified	_KLFHEVVQA_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-MSMS	HCT116MG_D190212_S2	2	535.8035888671875	2	535.803291	1069.59203	0.61349	0.00032871	0.52823	0.00028303	1.1417	0.00061174	535.8033833568446	31.991	0.25889	31.761	31.631	31.89	-0.23009					7	4	2	0	0	0	0.1935	1	11855	11855		41.956	9.1699	1	14414000			16971	6009	10381	10434	16298	16298					0.06001735714221468
KLFHGEIWPA	10	Unmodified	_KLFHGEIWPA_					0	0	0		ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	ENST00000447578.6_1_12:110930933-110930975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	599.3248901367188	2	599.324391	1196.63423	0.78022	0.0004676	-0.096483	-5.7824E-05	0.68373	0.00040978	599.8256322863414	45.115	0.26203	45.022	44.891	45.153	-0.092472					6	4	2	0	0	0	0.57664	1	17183	17183		29.841	15.435	1	14298000			16972	7966	10382	10435	16299	16299					0.0437771112262908
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	HCT116MG_D190212_S1	1	480.79779052734375	2	480.797478	959.580402	0.27125	0.00013041	0.2692	0.00012943	0.54045	0.00025985	480.797563962569	53.127	0.20506	53.127	52.999	53.204	0					6	3	2	0	0	0	0.063511	1	20347	20347		68.081	0.73685	1	37428000			16973	5472	10383	10436	16300	16300					0.09899538690910958
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	HCT116MG_D190212_S2	2	480.7974853515625	2	480.797478	959.580402	0.054488	2.6198E-05	0.25663	0.00012339	0.31112	0.00014959	480.79755488111806	53.332	0.3609	53.143	52.913	53.274	-0.18922					13	6	3	0	0	0	0.027492	1	20513	20513		88.904	25.341	1	48615000			16974	5472	10383	10436	16301	16301					0.09899538690910958
KLFNDAIRL	9	Unmodified	_KLFNDAIRL_					0	0	0		ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	ENST00000486403.1_1_2:114398907-114399703:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	545.3247680664062	2	545.324391	1088.63423	0.44746	0.00024401	-0.17164	-9.3598E-05	0.27582	0.00015041	545.3244013760245	46.247	0.41196	46.146	45.966	46.378	-0.1014					13	7	3	0	0	0	0.0050238	1	17622	17622		137.42	52.152	1	32401000			16975	1389	10384	10437	16302	16302					0.09345711122591638
KLFNEFIQL	9	Unmodified	_KLFNEFIQL_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	HCT116MG_D190212_S1	1	576.3269653320312	2	576.326599	1150.63865	0.44774	0.00025804	0.13256	7.64E-05	0.5803	0.00033444	576.326656586548	56.145	0.20631	56.145	56.015	56.222	0					8	3	3	0	0	0	0.016701	1	21601	21601		99.799	7.3075	1	70610000			16976	1151	10385	10438	16303	16303					0.06935175545504535
KLFNEFIQL	9	Unmodified	_KLFNEFIQL_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	HCT116MG_D190212_S2	2	576.3270263671875	2	576.326599	1150.63865	0.48816	0.00028134	0.083692	4.8234E-05	0.57185	0.00032957	576.3265852995835	56.26	0.25808	56.077	55.949	56.207	-0.18261					12	4	4	0	0	0	0.0057285	1	21710	21710		131.27	24.081	1	138330000			16977	1151	10385	10438	16304	16304					0.06935175545504535
KLFNGTFLKA	10	Unmodified	_KLFNGTFLKA_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000411858.1_1_7:6854458-6863725:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MSMS	HCT116MG_D190212_S2	2	569.7413940429688	2	569.834591	1137.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.422	1	44.337	43.837	44.837	-0.084797								0	0	0	0.060569	1	16870	16870		91.085	23.004	1				16978	2776	10386	10439	16305	16305					0.09130881782402867
KLFRTVLELQP	11	Unmodified	_KLFRTVLELQP_					0	0	0		nc|ENSG00000007174|Q9NYC9-3|DNAH9;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	nc|ENSG00000007174|Q9NYC9-3|DNAH9	nc|ENSG00000007174|Q9NYC9-3|DNAH9	MSMS	HCT116MG_D190212_S1	1	448.60797119140625	3	448.606367	1342.79727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.783	1	53.783	53.283	54.283	0								0	0	0	0.95778	1	20606	20606		2.2527	0.51045	1				16979	840	10387	10440	16306	16306					0.13958469453791622
KLFSEGLFSA	10	Unmodified	_KLFSEGLFSA_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	HCT116MG_D190212_S2	2	549.794921875	2	549.795132	1097.57571	0.38645	0.00021247	-0.092225	-5.0705E-05	0.29423	0.00016177	549.7948006971001	54.211	0.1545	54.022	53.945	54.099	-0.1894					4	2	2	0	0	0	0.15757	1	20893	20893		63.227	13.294	1	23635000			16980	4755	10388	10441	16307	16307					0.030826097574845335
KLGDFGLATV	10	Unmodified	_KLGDFGLATV_					0	0	0		nc|ENSG00000170390|Q8N568-2|DCLK2;ENSG00000170390|ENST00000296550|DCLK2;nc|ENSG00000170390|Q8N568-3|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	MULTI-MSMS	HCT116MG_D190212_S1	1	510.7893371582031	2	510.78985	1019.56515	0.31085	0.00015878	-0.35663	-0.00018216	-0.045774	-2.3381E-05	510.789605764137	49.523	0.36079	49.523	49.286	49.647	0					10	6	3	0	0	0	0.066546	3	18877	18846;18877;18894		80.676	0	1	28942000			16981	5127	10389	10442	16308;16309;16310	16309					0.05614627103057046
KLGDFGLATV	10	Unmodified	_KLGDFGLATV_					0	0	0		nc|ENSG00000170390|Q8N568-2|DCLK2;ENSG00000170390|ENST00000296550|DCLK2;nc|ENSG00000170390|Q8N568-3|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	MSMS	HCT116MG_D190212_S2	2	510.7899475097656	2	510.78985	1019.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.684	1	49.52	49.02	50.02	-0.16369								0	0	0	0.1398	1	19022	19022		74.2	0	1				16982	5127	10389	10442	16311	16311					0.05614627103057046
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000397387.2_1_13:101408869-101409262:-|nuORF	ENST00000397387.2_1_13:101408869-101409262:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	973.5928955078125	1	973.592824	972.585547	0.90611	0.00088219	0.092891	9.0438E-05	0.99901	0.00097262	973.592574135012	44.699	0.26095	44.614	44.482	44.743	-0.084797					11	4	3	0	0	0	0.011082	1	16982	16982		110.67	31.947	1	87614000			16983	7667	10390	10443	16312	16312					0.09815797762848888
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000397387.2_1_13:101408869-101409262:-|nuORF	ENST00000397387.2_1_13:101408869-101409262:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	487.30029296875	2	487.30005	972.585547	0.33106	0.00016133	-0.13243	-6.4532E-05	0.19864	9.6795E-05	487.2999989784605	44.959	0.24308	44.65	44.489	44.732	-0.30927					10	4	3	0	0	0	0.047849	1	16807	16807		75.761	13.188	1	9508000			16984	7667	10390	10443	16313	16313					0.09815797762848888
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000397387.2_1_13:101408869-101409262:-|nuORF	ENST00000397387.2_1_13:101408869-101409262:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		1	973.592824	972.585547	0.55511	0.00054045	0.67734	0.00065945	1.2325	0.0011999	973.592850062843	44.647	0.20832	44.647	44.516	44.724	0	0.016566	0.00048245	NaN	110.67	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30944000			16985	7667	10390	10443							0.09815797762848888
KLGKITFI	8	Unmodified	_KLGKITFI_					0	0	0		nc|ENSG00000070010|Q92890-1|UFD1;ENSG00000070010|ENST00000263202|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF	nc|ENSG00000070010|Q92890-1|UFD1	nc|ENSG00000070010|Q92890-1|UFD1	MULTI-MSMS	HCT116MG_D190212_S2	2	460.3026123046875	2	460.302396	918.590239	0.42447	0.00019538	-0.020085	-9.245E-06	0.40438	0.00018614	460.30239531256086	44.646	0.21105	44.561	44.428	44.639	-0.084797					6	3	2	0	0	0	0.057078	1	16968	16968		115.69	23.201	1	34170000			16986	1228	10391	10444	16314	16314					0.12768726696253907
KLGLVQKV	8	Unmodified	_KLGLVQKV_					0	0	0		nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MSMS	HCT116MG_D190212_S2	2	442.8001403808594	2	442.80002	883.585488	0.20017	8.8635E-05	-0.076747	-3.3984E-05	0.12342	5.4652E-05	442.8000226433648	31.119	0.25804	30.852	30.716	30.974	-0.26704					6	4	2	0	0	0	0.12693	1	11486	11486		88.904	2.7823	1	28562000			16987	3665	10392	10445	16315	16315					0.13903842553509094
KLGNFFINEA	10	Unmodified	_KLGNFFINEA_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	HCT116MG_D190212_S2	2	576.8048706054688	2	576.806031	1151.59751	0.4458	0.00025714	-0.91881	-0.00052998	-0.47302	-0.00027284	576.8053372200968	50.39	0.21083	50.218	50.087	50.298	-0.1719					5	3	2	0	0	0	0.67188	1	19340	19340		22.736	11.242	1	20454000			16988	3917	10393	10446	16316	16316					0.027774145060448063
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S1	1	462.7976379394531	2	462.797478	923.580402	0.22696	0.00010504	0.15594	7.2167E-05	0.3829	0.0001772	462.79747776488335	26.351	0.52086	26.351	26.136	26.657	0					15	9	2	0	0	0	0.022505	1	9508	9508		93.938	22.805	1	8963200			16989	1258	10394	10447	16317	16317					0.11555538690890899
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S2	2	462.7978210449219	2	462.797478	923.580402	0.12587	5.8254E-05	-0.22763	-0.00010534	-0.10175	-4.709E-05	462.79728588142507	26.82	0.57687	26.467	26.189	26.766	-0.35254					16	10	2	0	0	0	0.01386	1	9686	9686		103.82	22.21	1	41862000			16990	1258	10394	10447	16318	16318					0.11555538690890899
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	450.28094482421875	2	450.28166	898.548768	-0.63768	-0.00028713	-0.28423	-0.00012798	-0.92191	-0.00041512	450.2813909305677	38.462	0.41713	38.462	38.227	38.644	0					17	7	3	0	0	0	0.01405	1	14381	14381		103.35	18.081	1	98070000			16991	6231	10395	10448	16319	16319					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	899.55517578125	1	899.556044	898.548768	-0.0067185	-6.0437E-06	-0.096569	-8.6869E-05	-0.10329	-9.2913E-05	899.5557416886365	38.41	0.31293	38.41	38.279	38.592	0					9	5	2	0	0	0	0.0050238	1	14406	14406		137.42	41.313	1	16037000			16992	6231	10395	10448	16320	16320					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	450.2814025878906	2	450.28166	898.548768	0.081757	3.6814E-05	0.16515	7.4363E-05	0.2469	0.00011118	450.2816056644026	38.441	0.52718	38.349	38.115	38.642	-0.092873					26	9	4	0	0	0	0.01405	1	14426	14426		103.35	18.081	1	412410000			16993	6231	10395	10448	16321	16321					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	899.5565795898438	1	899.556044	898.548768	0.93176	0.00083817	-0.13317	-0.0001198	0.79859	0.00071837	899.555755648324	38.462	0.36915	38.373	38.17	38.539	-0.089489					14	6	3	0	0	0	0.0063854	1	14444	14444		125.53	32.876	1	80787000			16994	6231	10395	10448	16322	16322					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	450.2815856933594	2	450.28166	898.548768	-0.046669	-2.1014E-05	0.23525	0.00010593	0.18858	8.4914E-05	450.2816678704103	38.732	0.46836	38.43	38.196	38.664	-0.30137					18	8	3	0	0	0	0.01405	1	14362	14362		103.35	7.0688	1	36157000			16995	6231	10395	10448	16323	16323					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	899.556640625	1	899.556044	898.548768	0.76602	0.00068908	0.37622	0.00033843	1.1422	0.0010275	899.5560919712533	38.745	0.26057	38.443	38.3	38.561	-0.30137					8	4	2	0	0	0	0.012596	1	14384	14384		106.94	28.212	1	4858900			16996	6231	10395	10448	16324	16324					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	450.281982421875	2	450.28166	898.548768	0.2288	0.00010302	-0.20519	-9.2394E-05	0.023607	1.063E-05	450.2815274596953	38.812	0.30688	38.43	38.232	38.539	-0.38163					11	5	3	0	0	0	0.034046	1	14249	14249		82.529	7.6003	1	7400800			16997	6231	10395	10448	16325	16325					0.09543545936946884
KLHDERVLV	9	Unmodified	_KLHDERVLV_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;TRAPPC4|p.A50V|1|0.47|ENSG00000196655|chr11:119018944-119018944|C/T|missense_variant	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S1	1	370.22088623046875	3	370.220624	1107.64004	-0.12455	-4.6112E-05	0.51509	0.0001907	0.39054	0.00014458	370.2210477478183	27.256	0.20847	27.256	27.125	27.334	0					5	3	2	0	0	0	0.51301	1	9913	9913		15.739	8.6369	1	8071700			16998	6093	10396	10449	16326	16326					0.09052809634272307
KLHDERVLV	9	Unmodified	_KLHDERVLV_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;TRAPPC4|p.A50V|1|0.47|ENSG00000196655|chr11:119018944-119018944|C/T|missense_variant	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S2	2	370.2204284667969	3	370.220624	1107.64004	-0.21861	-8.0933E-05	0.19795	7.3285E-05	-0.020659	-7.6485E-06	370.2207096013106	27.766	0.25575	27.424	27.295	27.551	-0.34201					9	4	3	0	0	0	0.33364	1	10132	10132		25.997	18.151	1	26211000			16999	6093	10396	10449	16327	16327					0.09052809634272307
KLHDERVLV	9	Unmodified	_KLHDERVLV_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;TRAPPC4|p.A50V|1|0.47|ENSG00000196655|chr11:119018944-119018944|C/T|missense_variant	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-SECPEP	HCT116MG_D190212_S2	2	554.7767944335938	2	554.827298	1107.64004	0.32108	0.00017814	-0.10978	-6.0908E-05	0.2113	0.00011723	554.8269640591092	27.766	0.35937	27.424	27.295	27.655	-0.34201					9	6	2	0	0	0	0.17443	1	10118	10118		27.088	7.7264	1	32640000			17000	6093	10396	10449	16328	16328					0.09052809634272307
KLHDERVLV	9	Unmodified	_KLHDERVLV_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;TRAPPC4|p.A50V|1|0.47|ENSG00000196655|chr11:119018944-119018944|C/T|missense_variant	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	554.827298	1107.64004	0.449	0.00024911	-0.13668	-7.5833E-05	0.31232	0.00017328	554.8272918097748	27.256	0.20847	27.256	27.125	27.334	0	-0.083883	-6.3899E-06	NaN	21.799	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6777100			17001	6093	10396	10449							0.09052809634272307
KLHDINAQMV	10	Unmodified	_KLHDINAQMV_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MSMS	HCT116MG_D190212_S2	2	584.8112182617188	2	584.81079	1167.60703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.327	1	32.097	31.597	32.597	-0.23009								0	0	0	0.90072	1	11957	11957		15.739	1.8326	1				17002	823	10397	10450	16329	16329					0.02992859519895319
KLHDVELHQV	10	Unmodified	_KLHDVELHQV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000560075.1_1_15:52439654-52476873:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S1	1	406.5591125488281	3	406.559417	1216.65642	-0.085126	-3.4609E-05	-0.020398	-8.2929E-06	-0.10552	-4.2902E-05	406.55936003118086	27.099	0.26002	27.099	26.918	27.178	0					8	4	2	0	0	0	0.01037	1	9821	9821		146.9	119.77	1	22732000			17003	1226	10398	10451	16330	16330					0.056758908003757824
KLHDVELHQV	10	Unmodified	_KLHDVELHQV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000560075.1_1_15:52439654-52476873:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S1	1	609.3353881835938	2	609.335487	1216.65642	0.45903	0.0002797	0.17867	0.00010887	0.6377	0.00038857	609.3352866786382	27.099	0.20785	27.099	26.97	27.178	0					8	3	3	0	0	0	0.014225	1	9832	9832		161.44	121.5	1	12718000			17004	1226	10398	10451	16331	16331					0.056758908003757824
KLHDVELHQV	10	Unmodified	_KLHDVELHQV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000560075.1_1_15:52439654-52476873:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S2	2	609.2981567382812	2	609.335487	1216.65642	0.72231	0.00044013	0.0018297	1.1149E-06	0.72414	0.00044124	609.3355179288915	27.559	0.25883	27.217	27.088	27.347	-0.34201					10	4	3	0	0	0	0.010948	2	10008	10008;10037		173.14	134.96	1	64974000			17005	1226	10398	10451	16332;16333	16332					0.056758908003757824
KLHDVELHQV	10	Unmodified	_KLHDVELHQV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000560075.1_1_15:52439654-52476873:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	HCT116MG_D190212_S2	2	406.5592346191406	3	406.559417	1216.65642	0.010214	4.1526E-06	-0.027202	-1.1059E-05	-0.016988	-6.9067E-06	406.5593681913574	27.559	0.31011	27.217	27.088	27.398	-0.34201					15	5	3	0	0	0	0.012957	1	10038	10038		136.86	109.74	1	66120000			17006	1226	10398	10451	16334	16334					0.056758908003757824
KLHEVRKIL	9	Unmodified	_KLHEVRKIL_					0	0	0			REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	MSMS	HCT116MG_D190212_S3	3	379.2489318847656	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.578	1	59.319	58.819	59.819	-0.25832								0	0	0	0.76995	1	22692	22692		1.0715	0.3738	1		+		17007	11753	10399	10452	16335	16335					0.1617396580197692
KLHGKSSR	8	Unmodified	_KLHGKSSR_					0	0	0			REV__nc|ENSG00000138756|Q9NSY1-2|BMP2K	REV__nc|ENSG00000138756|Q9NSY1-2|BMP2K	MULTI-MSMS	HCT116MG_D190212_S1	1	456.7723388671875	2	456.772326	911.530098	-0.086499	-3.951E-05	0.62612	0.00028599	0.53962	0.00024648	456.7725790034996	48.383	1.858	48.383	47.789	49.647	0					57	35	2	0	0	0	0.8672	1	18279	18279		2.3027	0	1	4944200000	+		17008	17146	10400	10453	16336	16336					0.07079429085752054
KLHGKSSR	8	Unmodified	_KLHGKSSR_					0	0	0			REV__nc|ENSG00000138756|Q9NSY1-2|BMP2K	REV__nc|ENSG00000138756|Q9NSY1-2|BMP2K	MULTI-MSMS	HCT116MG_D190212_S1	1	456.77288818359375	2	456.772326	911.530098	-0.064051	-2.9257E-05	0.51174	0.00023375	0.44769	0.00020449	456.77242652456005	50.24	0.87609	50.24	49.647	50.523	0					24	16	2	0	0	0	0.8672	1	19142	19142		2.3027	0	1	51446000	+		17009	17146	10400	10453	16337	16337					0.07079429085752054
KLHGKSSR	8	Unmodified	_KLHGKSSR_					0	0	0			REV__nc|ENSG00000138756|Q9NSY1-2|BMP2K	REV__nc|ENSG00000138756|Q9NSY1-2|BMP2K	MULTI-MSMS	HCT116MG_D190212_S4	4	912.5391845703125	1	912.537375	911.530098	0.57394	0.00052375	0.31252	0.00028519	0.88647	0.00080894	912.5374096197197	49.352	0.80022	48.99	48.662	49.462	-0.36213					41	16	4	0	0	0	0.8672	1	18236	18236		2.3027	0	1	50207000	+		17010	17146	10400	10453	16338	16338					0.07079429085752054
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S1	1	497.2955017089844	2	497.295633	992.576714	0.36703	0.00018252	-0.020371	-1.0131E-05	0.34665	0.00017239	497.29553511017	33.998	0.3656	33.998	33.815	34.181	0					17	6	4	0	0	0	0.042978	1	12589	12589		78.149	27.294	1	84784000			17011	5313;5312	10401	10454	16339	16339					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S2	2	497.29559326171875	2	497.295633	992.576714	0.38014	0.00018904	-0.055353	-2.7527E-05	0.32479	0.00016151	497.29551152104426	34.169	0.3111	33.993	33.864	34.175	-0.17512					15	5	4	0	0	0	0.049545	1	12704	12704		74.929	26.583	1	324380000			17012	5313;5312	10401	10454	16340	16340					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S2	2	993.583984375	1	993.58399	992.576714	0.7056	0.00070107	0.019922	1.9795E-05	0.72552	0.00072087	993.5839394667304	34.172	0.3111	33.997	33.864	34.175	-0.17512					9	5	3	0	0	0	0.020181	1	12725	12725		96.285	27.18	1	29638000			17013	5313;5312	10401	10454	16341	16341					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-MATCH	HCT116MG_D190212_S1	1		1	993.58399	992.576714	0.64224	0.00063812	0.38707	0.00038458	1.0293	0.0010227	993.584584109923	33.985	0.20907	33.985	33.815	34.024	0	-0.0060476	0.00011839	NaN	96.285	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4302100			17014	5313;5312	10401	10454							0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	497.295633	992.576714	0.36703	0.00018252	-0.020371	-1.0131E-05	0.34665	0.00017239	497.29553511017	33.998	0.3656	33.998	33.815	34.181	0	0.0022786	1.1014E-05	NaN	78.149	17	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84784000			17015	5313;5312	10401	10454							0.0801286891704649
KLHHRLHAP	9	Unmodified	_KLHHRLHAP_					0	0	0		ENSG00000176083|ENST00000349618|ZNF683;nc|ENSG00000176083|Q8IZ20|ZNF683	ENSG00000176083|ENST00000349618|ZNF683	ENSG00000176083|ENST00000349618|ZNF683	MULTI-MSMS	HCT116MG_D190212_S1	1	554.82763671875	2	554.827966	1107.64138	0.44899	0.00024911	-1.3419	-0.00074454	-0.89293	-0.00049542	554.8272918097748	27.256	0.20847	27.256	27.125	27.334	0					5	3	2	0	0	0	0.51829	1	9911	9911		15.847	2.8047	1	6777100			17016	5404	10402	10455	16342	16342					0.09186488513682889
KLHSQLRTTVL	11	Unmodified	_KLHSQLRTTVL_					0	0	0		nc|ENSG00000132613|Q765P7-2|MTSS2;ENSG00000132613|ENST00000338779|MTSS2	nc|ENSG00000132613|Q765P7-2|MTSS2	nc|ENSG00000132613|Q765P7-2|MTSS2	MULTI-MSMS	HCT116MG_D190212_S4	4	432.5970764160156	3	432.597983	1294.77212	0.36629	0.00015846	-1.2005	-0.00051933	-0.8342	-0.00036087	432.5972424811199	56.216	0.32123	55.91	55.668	55.989	-0.30626					8	5	2	0	0	0	0.74191	1	21077	21077		1.3296	0	1	1671700			17017	3196	10403	10456	16343	16343					0.13652414651210165
KLHSQLRTTVL	11	Unmodified	_KLHSQLRTTVL_					0	0	0		nc|ENSG00000132613|Q765P7-2|MTSS2;ENSG00000132613|ENST00000338779|MTSS2	nc|ENSG00000132613|Q765P7-2|MTSS2	nc|ENSG00000132613|Q765P7-2|MTSS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	432.597983	1294.77212	0.11163	4.8291E-05	-0.6555	-0.00028357	-0.54387	-0.00023528	432.597566599117	56.025	0.4099	55.84	55.64	56.05	-0.18442	-0.034918	3.7762E-05	NaN	1.3296	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26342000			17018	3196	10403	10456							0.13652414651210165
KLHSQLRTTVL	11	Unmodified	_KLHSQLRTTVL_					0	0	0		nc|ENSG00000132613|Q765P7-2|MTSS2;ENSG00000132613|ENST00000338779|MTSS2	nc|ENSG00000132613|Q765P7-2|MTSS2	nc|ENSG00000132613|Q765P7-2|MTSS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	432.597983	1294.77212	0.36629	0.00015846	-1.2005	-0.00051933	-0.8342	-0.00036087	432.5972424811199	56.216	0.32123	55.91	55.668	55.989	-0.30626	0.034918	-0.00066952	NaN	1.3296	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1671700			17019	3196	10403	10456							0.13652414651210165
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S2	2	544.3109741210938	2	544.310949	1086.60735	0.60855	0.00033124	-0.57237	-0.00031155	0.036173	1.9689E-05	544.3108578676953	34.894	0.2074	34.735	34.606	34.813	-0.15834					5	3	2	0	0	0	0.12205	1	13025	13025		53.833	9.9745	1	12906000			17020	6063;18668	10404	10457	16344	16344					0.06750602511442594
KLIEDKKNV	9	Unmodified	_KLIEDKKNV_					0	0	0			REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1	REV__tr|U7SUM1|U7SUM1_FUSNUFlgNproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01224PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	543.830078125	2	543.829506	1085.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.401	1	41.401	40.901	41.901	0								0	0	0	0.57787	1	15588	15588		24.991	7.8781	1		+		17021	17833	10405	10458	16345	16345					0.10506274057183873
KLIELKAEI	9	Unmodified	_KLIELKAEI_					0	0	0		ENST00000568485.1_1_16:67226831-67227071:+|nuORF;ENST00000567007.5_1_16:67226831-67232023:+|nuORF;ENSG00000205250|ENST00000379378|E2F4	ENST00000568485.1_1_16:67226831-67227071:+|nuORF	ENST00000568485.1_1_16:67226831-67227071:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	528.8367919921875	2	528.8368	1055.65905	0.50488	0.000267	-0.40361	-0.00021344	0.10126	5.3552E-05	528.8365524943331	41.88	0.26017	41.812	41.653	41.913	-0.068199					7	4	2	0	0	0	0.0081783	1	15853	15853		117.84	0	1	21488000			17022	6374	10406	10459	16346	16346					0.13344346205326474
KLIESKHEV	9	Unmodified	_KLIESKHEV_					0	0	0		nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H	nc|ENSG00000186591|P62256-2|UBE2H	nc|ENSG00000186591|P62256-2|UBE2H	MULTI-MSMS	HCT116MG_D190212_S1	1	541.8140258789062	2	541.813856	1081.61316	0.41657	0.0002257	-0.075801	-4.107E-05	0.34077	0.00018463	541.8138157718146	18.949	0.20861	18.949	18.819	19.027	0					6	3	2	0	0	0	0.043047	1	6555	6555		92.201	30.599	1	19735000			17023	5897	10407	10460	16347	16347					0.07561701023087153
KLIESKHEV	9	Unmodified	_KLIESKHEV_					0	0	0		nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H	nc|ENSG00000186591|P62256-2|UBE2H	nc|ENSG00000186591|P62256-2|UBE2H	MULTI-MSMS	HCT116MG_D190212_S2	2	541.8139038085938	2	541.813856	1081.61316	0.47265	0.00025609	-0.058529	-3.1712E-05	0.41413	0.00022438	541.8137118728682	19.804	0.25931	19.429	19.298	19.558	-0.37503					10	4	3	0	0	0	0.003796	1	6890	6890		179.28	79.528	1	59941000			17024	5897	10407	10460	16348	16348					0.07561701023087153
KLIESKHEV	9	Unmodified	_KLIESKHEV_					0	0	0		nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H	nc|ENSG00000186591|P62256-2|UBE2H	nc|ENSG00000186591|P62256-2|UBE2H	MULTI-MSMS	HCT116MG_D190212_S2	2	361.54486083984375	3	361.544996	1081.61316	-0.19592	-7.0835E-05	-0.16485	-5.9601E-05	-0.36077	-0.00013044	361.5449373136169	19.804	0.20757	19.429	19.298	19.506	-0.37503					8	3	3	0	0	0	0.034217	1	6892	6892		82.445	25.338	1	26506000			17025	5897	10407	10460	16349	16349					0.07561701023087153
KLIEYYQQL	9	Unmodified	_KLIEYYQQL_					0	0	0		ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4	ENSG00000132912|ENST00000447998|DCTN4	ENSG00000132912|ENST00000447998|DCTN4	MSMS	HCT116MG_D190212_S2	2	599.329345703125	2	599.329339	1196.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.214	1	44.136	43.636	44.636	-0.078373								0	0	0	0.22299	1	16787	16787		45.7	15.063	1				17026	3218	10408	10461	16350	16350					0.05366854337330551
KLIGDPNLEFV	11	Unmodified	_KLIGDPNLEFV_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENST00000444720.1_1_13:21321226-21321529:-|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	HCT116MG_D190212_S2	2	622.848388671875	2	622.847896	1243.68124	0.71423	0.00044486	-0.26653	-0.000166	0.44771	0.00027885	622.8478157676491	52.199	0.2069	52.012	51.883	52.09	-0.18725					8	3	3	0	0	0	0.58525	1	20068	20068		37.075	15.538	1	33938000			17027	3179	10409	10462	16351	16351					0.0691452588307584
KLIIFILKK	9	Unmodified	_KLIIFILKK_					0	0	0		ENST00000531550.1_1_11:118007744-118012097:-|nuORF;nc|ENSG00000177098|Q8IWT1-3|SCN4B;nc|ENSG00000177098|Q8IWT1-2|SCN4B;ENSG00000177098|ENST00000324727|SCN4B	ENST00000531550.1_1_11:118007744-118012097:-|nuORF	ENST00000531550.1_1_11:118007744-118012097:-|nuORF	MSMS	HCT116MG_D190212_S1	1	558.3974609375	2	558.39937	1114.78419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.31	1	16.31	15.81	16.81	0								0	0	0	0.76973	1	5480	5480		1.8442	0	1				17028	5450	10410	10463	16352	16352					0.23138683132356164
KLIKMYIKRAE	11	Unmodified	_KLIKMYIKRAE_					0	0	0			REV__ENST00000228872.8_1_12:12873979-12874138:+|nuORF	REV__ENST00000228872.8_1_12:12873979-12874138:+|nuORF	MSMS	HCT116MG_D190212_S1	1	696.9251708984375	2	696.923415	1391.83228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.739	1	59.739	59.239	60.239	0								0	0	0	0.96003	1	23024	23024		1.0715	0.67075	1		+		17029	14541	10411	10464	16353	16353					0.1520338899010767
KLILLLKRRKQ	11	Unmodified	_KLILLLKRRKQ_					0	0	0			REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF	REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF	MSMS	HCT116MG_D190212_S2	2	470.332763671875	3	470.332801	1407.97657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.575	1	61.433	60.933	61.933	-0.14227								0	0	0	0.96208	1	23852	23852		0	0	1		+		17030	15838	10412	10465	16354	16354					0.288903985323941
KLILLLKRRKQ	11	Unmodified	_KLILLLKRRKQ_					0	0	0			REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF	REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF	MSMS	HCT116MG_D190212_S4	4	470.3318786621094	3	470.332801	1407.97657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.507	1	62.258	61.758	62.758	-0.24919								0	0	0	0.96208	1	23604	23604		0	0	1		+		17031	15838	10412	10465	16355	16355					0.288903985323941
KLILRNKWKKL	11	Unmodified	_KLILRNKWKKL_					0	0	0			REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13	REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13	MSMS	HCT116MG_D190212_S2	2	720.4820556640625	2	720.482289	1438.95002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.053	1	58.888	58.388	59.388	-0.1653								0	0	0	0.96149	1	22836	22836		0.30703	0.30703	1		+		17032	12851	10413	10466	16356	16356					0.24810709641042195
KLILRNKWKKL	11	Unmodified	_KLILRNKWKKL_					0	0	0			REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13	REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13	MSMS	HCT116MG_D190212_S2	2	720.4817504882812	2	720.482289	1438.95002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.649	1	59.489	58.989	59.989	-0.16012								0	0	0	0.96149	1	23069	23069		0.30703	0	1		+		17033	12851	10413	10466	16357	16357					0.24810709641042195
KLILRNKWKKL	11	Unmodified	_KLILRNKWKKL_					0	0	0			REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13	REV__nc|ENSG00000161040|Q8NEE6-4|FBXL13	MSMS	HCT116MG_D190212_S2	2	720.4828491210938	2	720.482289	1438.95002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.336	1	60.182	59.682	60.682	-0.15441								0	0	0	0.96149	1	23350	23350		0.30703	0.30703	1		+		17034	12851	10413	10466	16358	16358					0.24810709641042195
KLILYMFFLDV	11	Unmodified	_KLILYMFFLDV_					0	0	0			REV__tr|U7SKK9|U7SKK9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02023PE=4SV=1	REV__tr|U7SKK9|U7SKK9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02023PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	467.72613525390625	3	467.933204	1400.77778	0.16431	7.6886E-05	0.54702	0.00025597	0.71133	0.00033285	468.2681513630246	34.14	0.20754	33.965	33.812	34.02	-0.17512					5	3	2	0	0	0	0.36563	1	12641	12641		2.4348	0.35082	1	5430800	+		17035	17700	10414	10467	16359	16359					0.0934237711867354
KLIPFLEKL	9	Unmodified	_KLIPFLEKL_					0	0	0		nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENSG00000137770|ENST00000260327|CTDSPL2	nc|ENSG00000137770|Q05D32-2|CTDSPL2	nc|ENSG00000137770|Q05D32-2|CTDSPL2	MULTI-MSMS	HCT116MG_D190212_S2	2	550.8578491210938	2	550.857535	1099.70052	0.38544	0.00021233	0.074873	4.1244E-05	0.46032	0.00025357	550.857398540354	54.722	0.20457	54.533	54.354	54.559	-0.1894					7	3	3	0	0	0	0.012343	1	21083	21083		107.56	30.739	1	52542000			17036	3499	10415	10468	16360	16360					0.15465526964658238
KLIPFLEKL	9	Unmodified	_KLIPFLEKL_					0	0	0		nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENSG00000137770|ENST00000260327|CTDSPL2	nc|ENSG00000137770|Q05D32-2|CTDSPL2	nc|ENSG00000137770|Q05D32-2|CTDSPL2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	550.857535	1099.70052	0.61324	0.00033781	0.57598	0.00031728	1.1892	0.00065509	550.8578001148469	54.561	0.15234	54.561	54.434	54.587	0	0.014183	6.2862E-05	NaN	107.56	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14993000			17037	3499	10415	10468							0.15465526964658238
KLIRKKKRYRI	11	Unmodified	_KLIRKKKRYRI_					0	0	0			REV__SP140|p.F779Lfs*17|1|0.23|ENSG00000079263|chr2:230311202-230311202|T/-|frameshift_variant	REV__SP140|p.F779Lfs*17|1|0.23|ENSG00000079263|chr2:230311202-230311202|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	751.5094604492188	2	751.511912	1501.00927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.447	1	46.447	45.947	46.947	0								0	0	0	0.96208	1	17623	17623		0	0	1		+		17038	10848	10416	10469	16361	16361					0.27880605655263935
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.S472Ffs*13|1|0.23|ENSG00000080345|chr2:151437275-151437276|-/T|frameshift_variant;RIF1|p.S472Pfs*34|1|0.3|ENSG00000080345|chr2:151437276-151437276|T/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant;ENST00000498041.1_1_2:152276743-152279974:+|nuORF;RIF1|p.N245Kfs*2|1|0.44|ENSG00000080345|chr2:151422985-151422986|-/A|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S1	1	536.8433227539062	2	536.342249	1070.66995	0.82866	0.00044444	-0.64272	-0.00034472	0.18593	9.9723E-05	536.3419148683467	41.576	0.26059	41.576	41.393	41.654	0					9	4	3	0	0	0	0.030601	1	15671	15671		85.764	17.926	1	12126000			17039	1393	10417	10470	16362	16362					0.1374374857962266
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.S472Ffs*13|1|0.23|ENSG00000080345|chr2:151437275-151437276|-/T|frameshift_variant;RIF1|p.S472Pfs*34|1|0.3|ENSG00000080345|chr2:151437276-151437276|T/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant;ENST00000498041.1_1_2:152276743-152279974:+|nuORF;RIF1|p.N245Kfs*2|1|0.44|ENSG00000080345|chr2:151422985-151422986|-/A|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S2	2	536.3427124023438	2	536.342249	1070.66995	0.60681	0.00032546	0.31452	0.00016869	0.92133	0.00049415	536.3423016520793	41.49	0.25558	41.422	41.293	41.549	-0.068199					11	4	3	0	0	0	0.0024989	1	15702	15702		184.36	42.276	1	59808000			17040	1393	10417	10470	16363	16363					0.1374374857962266
KLISTKKICC	10	Unmodified	_KLISTKKICC_					0	0	0			REV__ENST00000370651.5_1_6:64290538-64290784:+|nuORF	REV__ENST00000370651.5_1_6:64290538-64290784:+|nuORF	MSMS	HCT116MG_D190212_S1	1	568.83056640625	2	568.830137	1135.64572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.933	1	11.933	11.433	12.433	0								0	0	0	0.96911	1	3798	3798		0.45834	0	1		+		17041	15157	10418	10471	16364	16364					0.08332448830105932
KLKDGVLM	8	Unmodified	_KLKDGVLM_					0	0	0			REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	MULTI-MSMS	HCT116MG_D190212_S2	2	452.2701721191406	2	452.270238	902.525924	0.092575	4.1869E-05	-0.36676	-0.00016588	-0.27419	-0.00012401	452.27011201675003	45.618	0.35931	45.519	45.353	45.712	-0.099075					9	6	2	0	0	0	0.44484	1	17365	17365		46.021	0	1	30043000	+		17042	11919	10419	10472	16365	16365					0.07076203547831028
KLKDGVLM	8	Unmodified	_KLKDGVLM_					0	0	0			REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	REV__nc|ENSG00000130377|Q5FVE4-4|ACSBG2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	452.270238	902.525924	0.092575	4.1869E-05	-0.36676	-0.00016588	-0.27419	-0.00012401	452.27011201675003	45.618	0.35931	45.519	45.353	45.712	-0.099075	-0.066169	-6.8924E-05	NaN	46.021	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30043000	+		17043	11919	10419	10472							0.07076203547831028
KLKFLKESAQI	11	Unmodified	_KLKFLKESAQI_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MSMS	HCT116MG_D190212_S1	1	653.3750610351562	2	652.900463	1303.78637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.566	1	51.566	51.066	52.066	0								0	0	0	0.95273	1	19705	19705		4.897	2.3985	1		+		17044	14071	10420	10473	16366	16366					0.14663067079527536
KLKILRKWL	9	Unmodified	_KLKILRKWL_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	MSMS	HCT116MG_D190212_S1	1	399.94549560546875	3	399.944654	1196.81213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.871	1	11.871	11.371	12.371	0								0	0	0	0.77025	1	3774	3774		0	0	1		+		17045	12114	10421	10474	16367	16367					0.2216000611247182
KLKKLKMKQ	9	Unmodified	_KLKKLKMKQ_					0	0	0			REV__LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	REV__LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	572.785400390625	2	572.883561	1143.75257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.55	1	27.208	26.708	27.708	-0.34201								0	0	0	0.76973	1	10012	10012		1.8442	1.2427	1		+		17046	16990	10422	10475	16368	16368					0.18644367106753634
KLKKLKPRRRR	11	Unmodified	_KLKKLKPRRRR_					0	0	0			REV__ENSG00000136982|ENST00000313655|DSCC1	REV__ENSG00000136982|ENST00000313655|DSCC1	MSMS	HCT116MG_D190212_S3	3	740.01513671875	2	740.015153	1478.01575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.468	1	36.166	35.666	36.666	-0.30113								0	0	0	0.96208	1	13476	13476		0	0	1		+		17047	12157	10423	10476	16369	16369					0.29586543606592386
KLKKLVFKR	9	Unmodified	_KLKKLVFKR_					0	0	0			REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	MSMS	HCT116MG_D190212_S1	1	387.2713623046875	3	387.272771	1158.79648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.419	1	21.419	20.919	21.919	0								0	0	0	0.77019	1	7533	7533		0.23584	0.23584	1		+		17048	16666	10424	10477	16370	16370					0.2234371959539203
KLKKQLHTL	9	Unmodified	_KLKKQLHTL_					0	0	0			REV__nc|ENSG00000167460|P67936-2|TPM4	REV__nc|ENSG00000167460|P67936-2|TPM4	MSMS	HCT116MG_D190212_S1	1	370.2441101074219	3	370.244881	1107.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.399	1	47.399	46.899	47.899	0								0	0	0	0.76948	1	18008	18008		2.7352	1.9587	1		+		17049	17199	10425	10478	16371	16371					0.16326563427696783
KLKNKLKLRIK	11	Unmodified	_KLKNKLKLRIK_					0	0	0		ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant	ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant	ARFGAP3|p.G224Afs*32|1|0.31|ENSG00000242247|chr22:42823659-42823659|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	691.4906616210938	2	691.490114	1380.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.785	1	53.785	53.285	54.285	0								0	0	0	0.96157	1	20607	20607		0.26902	0.26902	1				17050	166	10426	10479	16372	16372					0.2904299615809123
KLKRDEFLHV	10	Unmodified	_KLKRDEFLHV_					0	0	0			REV__tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1	REV__tr|U7SU58|U7SU58_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01110PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	429.08868408203125	3	428.918945	1283.73501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.449	1	16.285	15.785	16.785	-0.16392								0	0	0	0.97045	1	5384	5384		0.15932	0	1		+		17051	17819	10427	10480	16373	16373					0.10448743105439462
KLKSGLRKHHR	11	Unmodified	_KLKSGLRKHHR_					0	0	0		ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	MSMS	HCT116MG_D190212_S4	4	680.4251098632812	2	680.425836	1358.83712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.258	1	57.969	57.469	58.469	-0.28879								0	0	0	0.9619	1	21890	21890		0	0	1				17052	6090	10428	10481	16374	16374					0.1720545396772195
KLKTLTQKIKV	11	Unmodified	_KLKTLTQKIKV_					0	0	0			REV__IFT57|p.S379T|1|0.01|ENSG00000114446|chr3:108162631-108162631|C/G|missense_variant	REV__IFT57|p.S379T|1|0.01|ENSG00000114446|chr3:108162631-108162631|C/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	650.4395751953125	2	650.439755	1298.86496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.644	1	63.521	63.021	64.021	-0.12264								0	0	0	0.96208	1	24667	24667		0	0	1		+		17053	16894	10429	10482	16375	16375					0.22747919384573834
KLKVHMRK	8	Unmodified	_KLKVHMRK_					0	0	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MSMS	HCT116MG_D190212_S4	4	520.3323974609375	2	520.331496	1038.64844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.049	1	60.789	60.289	61.289	-0.2602								0	0	0	0.8837	1	23020	23020		0.69038	0	1				17054	5522	10430	10483	16376	16376					0.13066085069908695
KLLDDEQPLRL	11	Unmodified	_KLLDDEQPLRL_					0	0	0		nc|ENSG00000068028|Q9NS23-3|RASSF1;nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1	nc|ENSG00000068028|Q9NS23-3|RASSF1	nc|ENSG00000068028|Q9NS23-3|RASSF1	MULTI-MSMS	HCT116MG_D190212_S2	2	670.8854370117188	2	670.382634	1338.75072	0.48375	0.0003243	1.1981	0.00080321	1.6819	0.0011275	670.8847973132947	45.01	0.26202	44.917	44.787	45.049	-0.092472					8	4	3	0	0	0	0.70721	1	17137	17137		19.144	1.7013	1	17377000			17055	1195	10431	10484	16377	16377					0.09488984831841663
KLLDFSTRI	9	Unmodified	_KLLDFSTRI_					0	0	0		ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	MSMS	HCT116MG_D190212_S1	1	546.8244018554688	2	546.824224	1091.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.796	1	46.796	46.296	47.296	0								0	0	0	0.75215	1	17764	17764		16.566	2.6598	1				17056	8560	10432	10485	16378	16378					0.09174291402746348
KLLDFSTRI	9	Unmodified	_KLLDFSTRI_					0	0	0		ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	ENST00000521797.1_1_5:162884004-162884578:-|nuORF	MSMS	HCT116MG_D190212_S2	2	546.82421875	2	546.824224	1091.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.81	1	46.698	46.198	47.198	-0.11121								0	0	0	0.35515	1	17840	17840		36.127	0	1				17057	8560	10432	10485	16379	16379					0.09174291402746348
KLLDLYRSL	9	Unmodified	_KLLDLYRSL_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	HCT116MG_D190212_S2	2	560.8397827148438	2	560.839874	1119.66519	0.25548	0.00014328	-0.2217	-0.00012434	0.033778	1.8944E-05	560.839847253119	53.284	0.20648	53.095	52.966	53.172	-0.18922					5	3	2	0	0	0	0.45222	1	20518	20518		19.626	2.5131	1	14231000	+		17058	12242	10433	10486	16380	16380					0.11014864436833705
KLLEGEESRL	10	Unmodified	_KLLEGEESRL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;CON__P08729;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__Q9DCV7	nc|ENSG00000170421|P05787-2|KRT8;CON__Q9DCV7	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	587.3276977539062	2	587.327328	1172.6401	0.38863	0.00022825	0.098302	5.7735E-05	0.48693	0.00028599	587.3273125336416	32.246	0.31222	32.246	32.066	32.378	0					13	5	4	0	0	0	0.00054456	1	11895	11895		185.27	0	1	44769000		+	17059	558;586	10434	10487	16381	16381					0.06068764843621466
KLLEGEESRL	10	Unmodified	_KLLEGEESRL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;CON__P08729;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__Q9DCV7	nc|ENSG00000170421|P05787-2|KRT8;CON__Q9DCV7	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	587.3275756835938	2	587.327328	1172.6401	0.41603	0.00024434	-0.028998	-1.7031E-05	0.38703	0.00022731	587.3272984653635	32.51	0.31266	32.28	32.098	32.411	-0.23009					12	5	3	0	0	0	0.0097788	1	12035	12035		150.18	0	1	82659000		+	17060	558;586	10434	10487	16382	16382					0.06068764843621466
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	371.5885009765625	3	371.588648	1111.74411	-0.32474	-0.00012067	0.036133	1.3426E-05	-0.28861	-0.00010725	371.5886382491873	21.761	0.20807	21.376	21.271	21.479	-0.38503					5	3	2	0	0	0	0.41422	1	7689	7689		21.799	6.551	1	17390000			17061	5458	10435	10488	16383	16383					0.19271136461793503
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	556.8795166015625	2	556.879333	1111.74411	0.23177	0.00012907	0.097185	5.412E-05	0.32895	0.00018319	556.8792424356687	21.786	0.15601	21.401	21.271	21.427	-0.38503					4	2	2	0	0	0	0.69255	1	7692	7692		8.7454	1.1365	1	14961000			17062	5458	10435	10488	16384	16384					0.19271136461793503
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	371.5882873535156	3	371.588648	1111.74411	-0.19019	-7.0673E-05	-0.21725	-8.0726E-05	-0.40744	-0.0001514	371.58855165545083	20.381	0.20827	20.429	20.311	20.52	0.048109					8	3	3	0	0	0	0.2464	1	7060	7060		36.395	10.374	1	5315600			17063	5458	10435	10488	16385	16385					0.19271136461793503
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	556.8798828125	2	556.879333	1111.74411	0.28736	0.00016002	0.12741	7.0952E-05	0.41477	0.00023098	556.8795761945698	20.393	0.20827	20.442	20.311	20.52	0.048107					5	3	2	0	0	0	0.61501	1	7078	7078		10.151	3.9448	1	2728700			17064	5458	10435	10488	16386	16386					0.19271136461793503
KLLENMNKL	9	Unmodified	_KLLENMNKL_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2;nc|ENSG00000196072|Q6QNY1-2|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MSMS	HCT116MG_D190212_S1	1	551.818359375	2	551.818084	1101.62162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.731	1	36.731	36.231	37.231	0								0	0	0	0.41664	1	13701	13701		32.786	2.1491	1				17065	6041	10436	10489	16387	16387					0.07486931668063335
KLLENMNKL	9	Unmodified	_KLLENMNKL_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2;nc|ENSG00000196072|Q6QNY1-2|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MULTI-SECPEP	HCT116MG_D190212_S2	2	551.2588500976562	2	551.818084	1101.62162	0.43945	0.0002425	0.76534	0.00042233	1.2048	0.00066483	551.8183577390536	36.661	0.25865	36.546	36.395	36.653	-0.11478					6	4	2	0	0	0	0.089596	1	13701	13701		57.108	5.6923	1	11229000			17066	6041	10436	10489	16388	16388					0.07486931668063335
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	HCT116MG_D190212_S1	1	519.3522338867188	2	519.352086	1036.68962	0.32368	0.0001681	0.14125	7.3361E-05	0.46493	0.00024146	519.3520435514199	57.542	0.25928	57.542	57.36	57.619	0					13	4	4	0	0	0	0.027442	1	22145	22145		88.954	7.3408	1	275500000			17067	1987	10437	10490	16389	16389					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	HCT116MG_D190212_S1	1	1037.697509765625	1	1037.69689	1036.68962	0.76541	0.00079426	-0.15558	-0.00016145	0.60983	0.00063281	1037.6965286796305	57.542	0.20733	57.542	57.412	57.619	0					6	3	2	0	0	0	0.0048275	1	22154	22154		139.14	42.854	1	23045000			17068	1987	10437	10490	16390	16390					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	HCT116MG_D190212_S2	2	519.352294921875	2	519.352086	1036.68962	0.37032	0.00019233	-0.016078	-8.3503E-06	0.35424	0.00018398	519.3521282999492	57.676	0.3635	57.501	57.367	57.73	-0.17494					18	6	5	0	0	0	0.027442	1	22294	22294		88.954	7.3408	1	706610000			17069	1987	10437	10490	16391	16391					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	HCT116MG_D190212_S2	2	1037.6976318359375	1	1037.69689	1036.68962	0.72962	0.00075713	0.13868	0.00014391	0.86831	0.00090104	1037.6969267505892	57.671	0.25987	57.496	57.418	57.678	-0.17494					10	4	4	0	0	0	0.0048275	1	22295	22295		139.14	42.854	1	72019000			17070	1987	10437	10490	16392	16392					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	519.352086	1036.68962	0.5102	0.00026497	-0.06744	-3.5025E-05	0.44276	0.00022995	519.3520063821306	57.767	0.20829	57.492	57.412	57.62	-0.27434	-0.019289	-9.7308E-05	NaN	88.954	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6276200			17071	1987	10437	10490							0.1727412459038078
KLLFKHMCY	9	Unmodified	_KLLFKHMCY_					0	0	0		NALCN|p.E1518K|1|0.1|ENSG00000102452|chr13:101065456-101065456|C/T|missense_variant;ENSG00000102452|ENST00000251127|NALCN	NALCN|p.E1518K|1|0.1|ENSG00000102452|chr13:101065456-101065456|C/T|missense_variant	NALCN|p.E1518K|1|0.1|ENSG00000102452|chr13:101065456-101065456|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	394.8774719238281	3	394.876924	1181.60894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8996	1	5.8996	5.3996	6.3996	0								0	0	0	0.77018	1	1779	1779		0.26902	0	1				17072	1840	10438	10491	16393	16393					0.025401970041684763
KLLGNVLVV	9	Unmodified	_KLLGNVLVV_					0	0	0		CON__P02070	CON__P02070	CON__P02070	MULTI-MSMS	HCT116MG_D190212_S2	2	477.8212585449219	2	477.820953	953.627353	0.43413	0.00020744	-0.15074	-7.2029E-05	0.28339	0.00013541	477.82076067389085	52.251	0.30994	52.064	51.883	52.193	-0.18725					11	5	3	0	0	0	0.050578	1	20072	20072		74.423	10.86	1	55770000		+	17073	546	10439	10492	16394	16394					0.14868398242049352
KLLGNVLVVVL	11	Unmodified	_KLLGNVLVVVL_					0	0	0		CON__P02070	CON__P02070	CON__P02070	MULTI-MSMS	HCT116MG_D190212_S1	1	583.8977661132812	2	583.897192	1165.77983	0.48568	0.00028359	0.50641	0.00029569	0.99209	0.00057928	583.8974097760913	57.528	0.20733	57.528	57.412	57.619	0					8	3	3	0	0	0	0.17159	1	22152	22152		78.728	1.9033	1	18628000		+	17074	546	10440	10493	16395	16395					0.20357173918796434
KLLHKWLKWRK	11	Unmodified	_KLLHKWLKWRK_					0	0	0			REV__ENST00000367240.6_1_1:203029522-203032974:+|nuORF	REV__ENST00000367240.6_1_1:203029522-203032974:+|nuORF	MSMS	HCT116MG_D190212_S3	3	768.4864501953125	2	768.487905	1534.96126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.458	1	40.156	39.656	40.656	-0.30161								0	0	0	0.96208	1	15020	15020		0	0	1		+		17075	15118	10441	10494	16396	16396					0.21517531735185003
KLLIKRLDVTV	11	Unmodified	_KLLIKRLDVTV_					0	0	0		ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	MSMS	HCT116MG_D190212_S4	4	433.290771484375	3	433.290379	1296.84931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.213	1	57.924	57.424	58.424	-0.28879								0	0	0	0.95976	1	21872	21872		1.2148	0.76031	1				17076	2667	10442	10495	16397	16397					0.21275632867536842
KLLKIKKIIT	10	Unmodified	_KLLKIKKIIT_					0	0	0			REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	REV__tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	599.4370727539062	2	599.436484	1196.85842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.982	1	58.817	58.317	59.317	-0.1653								0	0	0	0.97116	1	22807	22807		0	0	1		+		17077	17789	10443	10496	16398	16398					0.2678602622388553
KLLKLLKRKAL	11	Unmodified	_KLLKLLKRKAL_					0	0	0			REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	MSMS	HCT116MG_D190212_S3	3	441.9914855957031	3	441.990264	1322.94896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.745	1	14.826	14.326	15.326	0.081345								0	0	0	0.96208	1	4771	4771		0	0	1		+		17078	16393	10444	10497	16399	16399					0.3004049527216921
KLLKQVDFL	9	Unmodified	_KLLKQVDFL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	HCT116MG_D190212_S2	2	552.345458984375	2	552.344792	1102.67503	0.37213	0.00020554	0.51865	0.00028647	0.89078	0.00049202	552.3449623758858	45.939	0.20505	45.837	45.71	45.915	-0.1014					6	3	2	0	0	0	0.11363	1	17504	17504		55.503	11.73	1	15916000			17079	5480	10445	10498	16400	16400					0.127800524422355
KLLKRSRLVC	10	Unmodified	_KLLKRSRLVC_					0	0	0			REV__ENSG00000104356|ENST00000401707|POP1	REV__ENSG00000104356|ENST00000401707|POP1	MSMS	HCT116MG_D190212_S1	1	608.3860473632812	2	608.389542	1214.76453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.348	1	62.348	61.848	62.848	0								0	0	0	0.96911	1	24073	24073		0.45834	0.10771	1		+		17080	11210	10446	10499	16401	16401					0.16573983849957585
KLLLELNTI	9	Unmodified	_KLLLELNTI_					0	0	0		ENST00000301399.11_1_19:52376656-52376935:-|nuORF	ENST00000301399.11_1_19:52376656-52376935:-|nuORF	ENST00000301399.11_1_19:52376656-52376935:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	528.7371215820312	2	528.8368	1055.65905	0.466	0.00024644	-0.41222	-0.000218	0.053773	2.8437E-05	529.337978076879	41.888	0.20855	41.888	41.758	41.966	0					5	3	2	0	0	0	0.16347	1	15755	15755		47.594	5.6388	1	9118100			17081	7002	10447	10500	16402	16402					0.1334434620534921
KLLLTCNL	8	Unmodified	_KLLLTCNL_					0	0	0			REV__ENST00000591443.1_1_19:19230741-19231736:-|nuORF	REV__ENST00000591443.1_1_19:19230741-19231736:-|nuORF	MSMS	HCT116MG_D190212_S4	4	459.27996826171875	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.42	1	49.058	48.558	49.558	-0.36213								0	0	0	0.8837	1	18330	18330		2.0598	1.2661	1		+		17082	10688	10448	10501	16403	16403					0.07996490064851969
KLLLWVFWTRR	11	Unmodified	_KLLLWVFWTRR_					0	0	0		ENST00000466199.1_1_7:2406215-2406664:+|nuORF	ENST00000466199.1_1_7:2406215-2406664:+|nuORF	ENST00000466199.1_1_7:2406215-2406664:+|nuORF	MSMS	HCT116MG_D190212_S2	2	759.4614868164062	2	759.458813	1516.90307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.739	1	32.527	32.027	33.027	-0.21135								0	0	0	0.9598	1	12123	12123		1.1933	0.12188	1				17083	8105	10449	10502	16404	16404					0.16529850089887077
KLLNVDPDNV	10	Unmodified	_KLLNVDPDNV_					0	0	0		ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	MSMS	HCT116MG_D190212_S2	2	563.8084106445312	2	563.808771	1125.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.175	1	40.102	39.602	40.602	-0.072838								0	0	0	0.80235	1	15143	15143		28.495	17	1				17084	2531	10450	10503	16405	16405					0.04521093297830703
KLLPQLTYL	9	Unmodified	_KLLPQLTYL_					0	0	0		ENST00000486769.1_1_9:100760930-100767440:+|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A;ENSG00000136938|ENST00000339399|ANP32B	ENST00000486769.1_1_9:100760930-100767440:+|nuORF	ENST00000486769.1_1_9:100760930-100767440:+|nuORF	MSMS	HCT116MG_D190212_S2	2	544.839599609375	2	544.839342	1087.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55	1	54.812	54.312	55.312	-0.18797								0	0	0	0.67254	1	21189	21189		20.415	6.5085	1				17085	3449	10451	10504	16406	16406					0.12380650067916577
KLLRKYMTWHD	11	Unmodified	_KLLRKYMTWHD_					0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	MSMS	HCT116MG_D190212_S2	2	745.898681640625	2	745.900471	1489.78639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.355	1	47.234	46.734	47.734	-0.12175								0	0	0	0.87053	1	18062	18062		23.79	1.1317	1		+		17086	12119	10452	10505	16407	16407					0.06108743807862993
KLLSHSLLV	9	Unmodified	_KLLSHSLLV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	505.3237609863281	2	505.32386	1008.63317	0.72032	0.000364	-0.61021	-0.00030835	0.11011	5.5642E-05	505.32348033992974	41.68	0.20801	41.68	41.55	41.758	0					6	3	2	0	0	0	0.14362	1	15728	15728		49.554	15.153	1	8299900		+	17087	545	10453	10506	16408	16408					0.12919496753704607
KLLSHSLLV	9	Unmodified	_KLLSHSLLV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	505.3241882324219	2	505.32386	1008.63317	0.61051	0.0003085	-0.1891	-9.5556E-05	0.42141	0.00021295	505.32370680220146	41.68	0.25768	41.612	41.447	41.705	-0.068199					10	4	3	0	0	0	0.0080847	1	15769	15769		118.07	39.919	1	28193000		+	17088	545	10453	10506	16409	16409					0.12919496753704607
KLLSHSLLVTL	11	Unmodified	_KLLSHSLLVTL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	612.3892211914062	2	612.389731	1222.76491	0.27051	0.00016566	0.10173	6.2299E-05	0.37224	0.00022795	612.3896467715512	50.6	0.25784	50.6	50.42	50.678	0					10	4	3	0	0	0	0.037746	1	19302	19302		117.84	20.902	1	57552000		+	17089	545	10454	10507	16410	16410					0.16243682050821917
KLLSHSLLVTL	11	Unmodified	_KLLSHSLLVTL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	408.5955505371094	3	408.595579	1222.76491	-0.2675	-0.0001093	0.068051	2.7805E-05	-0.19945	-8.1493E-05	408.5956314720998	50.564	0.15407	50.564	50.472	50.626	0					6	2	3	0	0	0	0.44062	1	19317	19317		35.996	8.867	1	16989000		+	17090	545	10454	10507	16411	16411					0.16243682050821917
KLLSHSLLVTL	11	Unmodified	_KLLSHSLLVTL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	612.3902587890625	2	612.389731	1222.76491	0.5139	0.00031471	-0.24875	-0.00015233	0.26516	0.00016238	612.3895177373237	50.704	0.3637	50.532	50.298	50.662	-0.1719					18	6	4	0	0	0	2.5549E-05	1	19419	19419		166.77	37.837	1	203990000		+	17091	545	10454	10507	16412	16412					0.16243682050821917
KLLSHSLLVTL	11	Unmodified	_KLLSHSLLVTL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	408.59539794921875	3	408.595579	1222.76491	-0.12185	-4.9786E-05	0.033563	1.3714E-05	-0.088283	-3.6072E-05	408.59554831434275	50.699	0.31114	50.527	50.351	50.662	-0.1719					15	5	4	0	0	0	0.14382	1	19439	19439		61.165	25.169	1	49390000		+	17092	545	10454	10507	16413	16413					0.16243682050821917
KLLSHSLLVTL	11	Unmodified	_KLLSHSLLVTL_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MATCH	HCT116MG_D190212_S3	3		2	612.389731	1222.76491	0.38872	0.00023805	-0.093994	-5.7561E-05	0.29473	0.00018049	612.3895722778867	50.986	0.20839	50.672	50.49	50.698	-0.31381	0.070646	3.068E-05	NaN	166.77	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3025200		+	17093	545	10454	10507							0.16243682050821917
KLLSKFYEL	9	Unmodified	_KLLSKFYEL_					0	0	0		nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-2|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-4|USP48	nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-7|USP48	MULTI-MSMS	HCT116MG_D190212_S1	1	570.8372802734375	2	570.8368	1139.65905	0.4688	0.00026761	-0.18737	-0.00010696	0.28143	0.00016065	570.8368860820569	46.083	0.31258	46.083	45.818	46.13	0					7	5	2	0	0	0	0.0048066	1	17491	17491		163.69	86.862	1	39405000			17094	1545	10455	10508	16414	16414					0.09480346205350543
KLLSKFYEL	9	Unmodified	_KLLSKFYEL_					0	0	0		nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-2|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-4|USP48	nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-7|USP48	MULTI-MSMS	HCT116MG_D190212_S2	2	570.8370361328125	2	570.8368	1139.65905	0.38416	0.00021929	-0.090247	-5.1517E-05	0.29391	0.00016778	570.8367831508988	46.043	0.51514	45.942	45.812	46.327	-0.1014					20	9	4	0	0	0	0.0035391	1	17536	17536		184.36	98.024	1	104360000			17095	1545	10455	10508	16415	16415					0.09480346205350543
KLLSKFYEL	9	Unmodified	_KLLSKFYEL_					0	0	0		nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-2|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-4|USP48	nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-7|USP48	MULTI-MSMS	HCT116MG_D190212_S2	2	380.8931884765625	3	380.893625	1139.65905	-0.14559	-5.5455E-05	-0.25456	-9.6961E-05	-0.40015	-0.00015242	380.89346527413454	46.042	0.25652	45.941	45.812	46.068	-0.1014					8	4	2	0	0	0	0.45222	1	17565	17565		19.626	8.1081	1	16156000			17096	1545	10455	10508	16416	16416					0.09480346205350543
KLMDLDVEQL	10	Unmodified	_KLMDLDVEQL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MSMS	HCT116MG_D190212_S1	1	602.3174438476562	2	602.318114	1202.62167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.772	1	51.772	51.272	52.272	0								0	0	0	0.46397	1	19789	19789		49.527	13.021	1				17097	3198	10456	10509	16417	16417					0.028468868774098155
KLMEEIREL	9	Unmodified	_KLMEEIREL_					0	0	0		nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644;ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant;ZNF644|p.Q475H|1|0.39|ENSG00000122482|chr1:90939929-90939929|C/A|missense_variant	nc|ENSG00000122482|Q9H582-2|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	MULTI-MSMS	HCT116MG_D190212_S1	1	580.8211669921875	2	580.820824	1159.62709	0.91509	0.0005315	-0.6903	-0.00040094	0.22479	0.00013056	580.8203878484683	41.554	0.20835	41.554	41.393	41.602	0					5	3	2	0	0	0	0.35128	1	15654	15654		25.399	7.253	1	8078800			17098	2764	10457	10510	16418	16418					0.053666104598733
KLMIRYLL	8	Unmodified	_KLMIRYLL_					0	0	0		tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	tr|U7SRL8|U7SRL8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01573PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	525.3294067382812	2	525.33063	1048.64671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.446	1	61.186	60.686	61.686	-0.2602								0	0	0	0.8837	1	23181	23181		0.69038	0.088878	1				17099	18404	10458	10511	16419	16419					0.12433031261275573
KLNAKLAEL	9	Unmodified	_KLNAKLAEL_					0	0	0		ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A;ENST00000490878.1_1_2:85768733-85769182:+|nuORF	ENSG00000168906|ENST00000306434|MAT2A	ENSG00000168906|ENST00000306434|MAT2A	MULTI-MSMS	HCT116MG_D190212_S1	1	500.3134765625	2	500.313492	998.612431	0.50791	0.00025411	-0.16853	-8.4317E-05	0.33938	0.0001698	500.3133991036524	35.755	0.26003	35.755	35.63	35.89	0					10	4	3	0	0	0	0.032914	1	13337	13337		83.429	3.8324	1	16355000			17100	5037	10459	10512	16420	16420					0.11306906374034043
KLNAKLAEL	9	Unmodified	_KLNAKLAEL_					0	0	0		ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A;ENST00000490878.1_1_2:85768733-85769182:+|nuORF	ENSG00000168906|ENST00000306434|MAT2A	ENSG00000168906|ENST00000306434|MAT2A	MULTI-MSMS	HCT116MG_D190212_S2	2	500.3134460449219	2	500.313492	998.612431	0.77335	0.00038692	-0.35843	-0.00017933	0.41492	0.00020759	500.3131936449737	35.863	0.25735	35.735	35.606	35.864	-0.12799					9	4	3	0	0	0	0.0023719	1	13396	13396		185.05	42.97	1	53669000			17101	5037	10459	10512	16421	16421					0.11306906374034043
KLNATNIEL	9	Unmodified	_KLNATNIEL_					0	0	0		nc|ENSG00000143106|P28066-2|PSMA5;ENSG00000143106|ENST00000271308|PSMA5	nc|ENSG00000143106|P28066-2|PSMA5	nc|ENSG00000143106|P28066-2|PSMA5	MULTI-MSMS	HCT116MG_D190212_S1	1	508.29296875	2	508.292756	1014.57096	0.76213	0.00038738	0.11447	5.8185E-05	0.8766	0.00044557	508.2927100215476	41.524	0.20835	41.524	41.393	41.602	0					6	3	2	0	0	0	0.010834	1	15643	15643		111.29	25.93	1	16792000			17102	3784	10460	10513	16422	16422					0.06425725614690236
KLNATNIEL	9	Unmodified	_KLNATNIEL_					0	0	0		nc|ENSG00000143106|P28066-2|PSMA5;ENSG00000143106|ENST00000271308|PSMA5	nc|ENSG00000143106|P28066-2|PSMA5	nc|ENSG00000143106|P28066-2|PSMA5	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2930908203125	2	508.292756	1014.57096	0.49638	0.00025231	0.33558	0.00017057	0.83196	0.00042288	508.2927236766967	41.49	0.25558	41.422	41.293	41.549	-0.068199					11	4	3	0	0	0	0.0066233	1	15701	15701		123.45	26.376	1	54968000			17103	3784	10460	10513	16423	16423					0.06425725614690236
KLNDLIQRL	9	Unmodified	_KLNDLIQRL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	HCT116MG_D190212_S1	1	556.8434448242188	2	556.842948	1111.67134	0.55975	0.00031169	0.058104	3.2355E-05	0.61785	0.00034405	556.8429029473037	45.949	0.26138	45.949	45.765	46.027	0					11	4	3	0	0	0	8.0769E-12	1	17414	17414		304.1	85.905	1	62263000			17104	2753	10461	10514	16424	16424					0.11997382668369028
KLNDLIQRL	9	Unmodified	_KLNDLIQRL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	HCT116MG_D190212_S2	2	556.8424682617188	2	556.842948	1111.67134	0.36287	0.00020206	0.10357	5.7673E-05	0.46644	0.00025974	556.8429137083916	45.939	0.30829	45.837	45.658	45.966	-0.1014					17	5	4	0	0	0	3.1935E-15	1	17476	17476		325.44	91.97	1	212420000			17105	2753	10461	10514	16425	16425					0.11997382668369028
KLNENLRRLI	10	Unmodified	_KLNENLRRLI_					0	0	0			REV__nc|ENSG00000137601|Q96PY6-4|NEK1	REV__nc|ENSG00000137601|Q96PY6-4|NEK1	MULTI-MSMS	HCT116MG_D190212_S1	1	634.8921508789062	2	634.893503	1267.77245	0.77998	0.00049521	-1.1117	-0.00070583	-0.33174	-0.00021062	634.8925721289585	55.121	0.20344	55.121	54.994	55.197	0					9	3	3	0	0	0	0.88163	1	21171	21171		5.7319	0.43497	1	288610000	+		17106	12182	10462	10515	16426	16426					0.14927834371087556
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF;nc|ENSG00000134910|P46977-2|STT3A	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	551.7986450195312	2	551.798206	1101.58186	0.43038	0.00023748	0.99402	0.0005485	1.4244	0.00078598	551.7986327501601	41.439	0.35795	41.371	41.191	41.549	-0.068199					8	6	2	0	0	0	0.0094709	1	15664	15664		114.65	50.413	1	51004000			17107	3316	10463	10516	16427	16427					0.035131279889810685
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF;nc|ENSG00000134910|P46977-2|STT3A	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MSMS	HCT116MG_D190212_S3	3	551.7982788085938	2	551.798206	1101.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.76	1	41.457	40.957	41.957	-0.30257								0	0	0	0.067861	1	15536	15536		65.235	30.833	1				17108	3316	10463	10516	16428	16428					0.035131279889810685
KLPEKWESV	9	Unmodified	_KLPEKWESV_					0	0	0		nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1;ENST00000574823.5_1_16:11935494-11935832:-|nuORF	nc|ENSG00000171490|O76021-2|RSL1D1	nc|ENSG00000171490|O76021-2|RSL1D1	MULTI-MSMS	HCT116MG_D190212_S2	2	558.3082885742188	2	558.308406	1114.60226	0.52703	0.00029424	-0.11144	-6.2219E-05	0.41559	0.00023203	558.3083040061276	34.785	0.56927	34.627	34.399	34.968	-0.15834					25	10	3	0	0	0	0.37539	1	12937	12937		24.021	2.4836	1	36815000			17109	5198	10464	10517	16429	16429					0.04954298648794975
KLPGKREIFV	10	Unmodified	_KLPGKREIFV_					0	0	0		ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	MSMS	HCT116MG_D190212_S4	4	396.2493591308594	3	396.248403	1185.72338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.437	1	25.158	24.658	25.658	-0.27958								0	0	0	0.95381	1	9014	9014		3.8763	1.033	1				17110	3234	10465	10518	16430	16430					0.13794546082112902
KLPKKRKKHVP	11	Unmodified	_KLPKKRKKHVP_					0	0	0		nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000116396|Q03721|KCNC4	nc|ENSG00000116396|Q03721-2|KCNC4	nc|ENSG00000116396|Q03721-2|KCNC4	MSMS	HCT116MG_D190212_S1	1	679.9567260742188	2	679.958981	1357.90341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.755	1	38.755	38.255	39.255	0								0	0	0	0.96141	1	14519	14519		0.35063	0	1				17111	2515	10466	10519	16431	16431					0.23877269809759127
KLQDGVHII	9	Unmodified	_KLQDGVHII_					0	0	0		nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	nc|ENSG00000183520|Q9Y3A2-2|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	MULTI-MSMS	HCT116MG_D190212_S2	2	511.8030700683594	2	511.803291	1021.59203	0.14156	7.2451E-05	-0.00090511	-4.6324E-07	0.14065	7.1988E-05	511.80311471285637	37.263	0.25797	37.16	37.026	37.284	-0.10318					9	4	3	0	0	0	0.0042464	1	13971	13971		147.06	28.164	1	23586000			17112	5721	10467	10520	16432	16432					0.08209735714228827
KLQDGVHII	9	Unmodified	_KLQDGVHII_					0	0	0		nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	nc|ENSG00000183520|Q9Y3A2-2|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	MULTI-MSMS	HCT116MG_D190212_S3	3	511.8028564453125	2	511.803291	1021.59203	0.25681	0.00013144	0.82677	0.00042314	1.0836	0.00055458	511.803251407641	37.461	0.20781	37.159	37.029	37.237	-0.30137					6	3	2	0	0	0	0.071914	1	13904	13904		63.961	6.2385	1	5941600			17113	5721	10467	10520	16433	16433					0.08209735714228827
KLQDQIFNL	9	Unmodified	_KLQDQIFNL_					0	0	0		nc|ENSG00000148908|O43665-2|RGS10;nc|ENSG00000148908|O43665-1|RGS10;ENSG00000148908|ENST00000369103|RGS10	nc|ENSG00000148908|O43665-2|RGS10	nc|ENSG00000148908|O43665-2|RGS10	MULTI-SECPEP	HCT116MG_D190212_S2	2	559.7813110351562	2	559.813856	1117.61316	0.36866	0.00020638	-0.88292	-0.00049427	-0.51427	-0.00028789	559.8134254348288	52.87	0.30809	52.681	52.501	52.809	-0.18922					7	5	2	0	0	0	0.051641	1	20334	20334		65.235	0	1	16249000			17114	4038	10468	10521	16434	16434					0.05905701023084475
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-4|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF	nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-4|FANCI	MULTI-MSMS	HCT116MG_D190212_S1	1	560.3246459960938	2	560.324057	1118.63356	0.46944	0.00026304	0.8674	0.00048603	1.3368	0.00074907	560.3246364645826	52.66	0.46273	52.66	52.485	52.948	0					16	8	3	0	0	0	0.0042464	1	20156	20156		147.06	75.926	1	58518000			17115	3671	10469	10522	16435	16435					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-4|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF	nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-4|FANCI	MULTI-MSMS	HCT116MG_D190212_S2	2	560.3250122070312	2	560.324057	1118.63356	0.3508	0.00019656	1.3421	0.000752	1.6929	0.00094857	560.3248874073038	52.946	0.56863	52.757	52.397	52.966	-0.18922					19	10	3	0	0	0	0.020353	1	20346	20346		96.111	30.876	1	42361000			17116	3671	10469	10522	16436	16436					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-4|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF	nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-4|FANCI	MULTI-MSMS	HCT116MG_D190212_S3	3	560.3245239257812	2	560.324057	1118.63356	0.55964	0.00031358	-0.0033077	-1.8534E-06	0.55633	0.00031172	560.3240744961569	53.083	0.31387	52.78	52.669	52.983	-0.30305					8	5	2	0	0	0	0.14362	1	20108	20108		49.554	13.427	1	2999700			17117	3671	10469	10522	16437	16437					0.07898871682891695
KLQEKIQEL	9	Unmodified	_KLQEKIQEL_					0	0	0		CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant;nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE;CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant;CENPE|p.S2121Efs*18|1|0.05|ENSG00000138778|chr4:103136302-103136303|-/TGCTC|frameshift_variant	CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant	CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	564.8346557617188	2	564.834788	1127.65502	0.58068	0.00032799	-0.32043	-0.00018099	0.26025	0.000147	564.8344631140449	32.046	0.20704	31.816	31.683	31.89	-0.23009					8	3	3	0	0	0	0.016412	2	11860	11860;11865		100.09	26.1	1	22998000			17118	402	10470	10523	16438;16439	16438					0.0963025671160267
KLQEKVELL	9	Unmodified	_KLQEKVELL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MSMS	HCT116MG_D190212_S2	2	550.3409423828125	2	550.339707	1098.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.162	1	39.084	38.584	39.584	-0.077835								0	0	0	0.089458	1	14731	14731		59.052	5.6485	1				17119	4264	10471	10524	16440	16440					0.1194744471699778
KLQEVGQVSV	10	Unmodified	_KLQEVGQVSV_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	HCT116MG_D190212_S1	1	543.811279296875	2	543.811313	1085.60807	0.54755	0.00029776	-0.41941	-0.00022808	0.12814	6.9685E-05	543.8110642749444	34.259	0.26082	34.259	34.128	34.389	0					6	4	2	0	0	0	0.025427	1	12731	12731		110.55	40.221	1	8734800			17120	3562	10472	10525	16441	16441					0.06869397160471635
KLQEVGQVSV	10	Unmodified	_KLQEVGQVSV_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|4|0.23|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant;ITGAV|p.V806Hfs*11|1|0.07|ENSG00000138448|chr2:186667758-186667759|-/CATTTTCAAAA|frameshift_variant;ITGAV|p.G401Efs*13|1|0.4|ENSG00000138448|chr2:186646721-186646721|A/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	HCT116MG_D190212_S2	2	544.313232421875	2	543.811313	1085.60807	0.68352	0.00037171	-0.15459	-8.4066E-05	0.52893	0.00028764	543.8109360078339	34.405	0.25923	34.229	34.072	34.331	-0.17511					7	4	2	0	0	0	0.019418	1	12816	12816		121.53	51.202	1	22688000			17121	3562	10472	10525	16442	16442					0.06869397160471635
KLQPGSVKKV	10	Unmodified	_KLQPGSVKKV_					0	0	0		CNN3|p.Q94Sfs*9|1|0.25|ENSG00000117519|chr1:94902225-94902226|-/A|frameshift_variant;nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	CNN3|p.Q94Sfs*9|1|0.25|ENSG00000117519|chr1:94902225-94902226|-/A|frameshift_variant	CNN3|p.Q94Sfs*9|1|0.25|ENSG00000117519|chr1:94902225-94902226|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	361.2080993652344	3	361.901003	1082.68118	-0.18794	-6.8015E-05	-0.44338	-0.00016046	-0.63132	-0.00022847	361.900913017066	19.595	0.1552	19.22	19.091	19.246	-0.37503					4	2	2	0	0	0	0.29609	1	6779	6779		19.144	9.6	1	3264700			17122	496	10473	10526	16443	16443					0.14314570673764138
KLQRKITTY	9	Unmodified	_KLQRKITTY_					0	0	0		USP22|p.R419Q|1|0.58|ENSG00000124422|chr17:21006962-21006962|C/T|missense_variant	USP22|p.R419Q|1|0.58|ENSG00000124422|chr17:21006962-21006962|C/T|missense_variant	USP22|p.R419Q|1|0.58|ENSG00000124422|chr17:21006962-21006962|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	384.2355041503906	3	384.236274	1149.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.408	1	51.058	50.558	51.558	-0.35028								0	0	0	0.76995	1	19132	19132		1.0715	0	1				17123	18684	10474	10527	16444	16444					0.11813669185403342
KLQRNRLAKTK	11	Unmodified	_KLQRNRLAKTK_					0	0	0		nc|ENSG00000174600|Q99788-2|CMKLR1;ENSG00000174600|ENST00000550402|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	MSMS	HCT116MG_D190212_S3	3	678.4354858398438	2	678.433327	1354.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.336	1	60.083	59.583	60.583	-0.25233								0	0	0	0.96157	1	23001	23001		0.26902	0.26902	1				17124	5339	10475	10528	16445	16445					0.18886901045061677
KLRDIHYSL	9	Unmodified	_KLRDIHYSL_					0	0	0			REV__nc|ENSG00000010803|Q96GD3-6|SCMH1	REV__nc|ENSG00000010803|Q96GD3-6|SCMH1	MSMS	HCT116MG_D190212_S2	2	382.219482421875	3	382.220624	1143.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.358	1	47.236	46.736	47.736	-0.12175								0	0	0	0.76793	1	18063	18063		8.1555	0	1		+		17125	10520	10476	10529	16446	16446					0.0739680963426963
KLREDLERL	9	Unmodified	_KLREDLERL_					0	0	0		ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	391.2312927246094	3	391.2313	1170.67207	0.25498	9.9757E-05	0.07973	3.1193E-05	0.33471	0.00013095	391.2312606472498	31.991	0.20699	31.761	31.631	31.838	-0.23009					8	3	3	0	0	0	0.019537	1	11844	11844		80.896	3.847	1	31986000			17126	6505	10477	10530	16447	16447					0.09356177317408765
KLREDLERL	9	Unmodified	_KLREDLERL_					0	0	0		ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	586.3433227539062	2	586.343312	1170.67207	0.69393	0.00040688	-0.73852	-0.00043302	-0.044586	-2.6143E-05	586.3428564819187	31.991	0.20699	31.761	31.631	31.838	-0.23009					6	3	2	0	0	0	0.12465	1	11850	11850		53.317	3.7895	1	24678000			17127	6505	10477	10530	16448	16448					0.09356177317408765
KLREDLERL	9	Unmodified	_KLREDLERL_					0	0	0		ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	391.2313	1170.67207	-0.088714	-3.4708E-05	0.079369	3.1051E-05	-0.0093451	-3.6561E-06	391.23113197071575	31.727	0.26075	31.727	31.596	31.857	0	-0.016992	-2.2214E-07	NaN	80.896	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10893000			17128	6505	10477	10530							0.09356177317408765
KLRGELDKRDK	11	Unmodified	_KLRGELDKRDK_					0	0	0			REV__ENST00000538526.5_3_12:109697932-109704164:+|nuORF	REV__ENST00000538526.5_3_12:109697932-109704164:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	679.9002685546875	2	679.39915	1356.78375	0.2263	0.00015374	-0.43267	-0.00029395	-0.20637	-0.00014021	679.3986222377962	53.852	1.8033	53.663	52.449	54.252	-0.1894					63	34	3	0	0	0	0.74191	1	20753	20753		5.7834	0.05158	1	18843000	+		17129	10821	10478	10531	16449	16449					0.11962611674539403
KLRKLGIHLQW	11	Unmodified	_KLRKLGIHLQW_					0	0	0		ENST00000381298.6_1_5:55235198-55235360:-|nuORF	ENST00000381298.6_1_5:55235198-55235360:-|nuORF	ENST00000381298.6_1_5:55235198-55235360:-|nuORF	MSMS	HCT116MG_D190212_S3	3	696.4373779296875	2	696.435338	1390.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.689	1	58.424	57.924	58.924	-0.26545								0	0	0	0.9598	1	22332	22332		1.1933	0.12188	1				17130	7576	10479	10532	16450	16450					0.1763299053877745
KLRLAGAP	8	Unmodified	_KLRLAGAP_					0	0	0			REV__KRBA1|p.Q367Nfs*25|1|0.31|ENSG00000133619|chr7:149724818-149724818|C/-|frameshift_variant	REV__KRBA1|p.Q367Nfs*25|1|0.31|ENSG00000133619|chr7:149724818-149724818|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	413.26922607421875	2	413.268887	824.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.094	1	17.094	16.594	17.594	0								0	0	0	0.8837	1	5796	5796		6.3541	0	1		+		17131	16935	10480	10533	16451	16451					0.10394116205179671
KLRNHQLHIFT	11	Unmodified	_KLRNHQLHIFT_					0	0	0			REV__ENSG00000139329|ENST00000266718|LUM	REV__ENSG00000139329|ENST00000266718|LUM	MULTI-SECPEP	HCT116MG_D190212_S2	2	353.22698974609375	4	352.455839	1405.79425	-0.19445	-6.8535E-05	-0.31698	-0.00011172	-0.51142	-0.00018025	352.70641459070555	23.413	0.15495	23.028	22.934	23.089	-0.38521					4	2	2	0	0	0	0.36598	1	8354	8354		2.6312	1.7863	1	6689900	+		17132	12258	10481	10534	16452	16452					0.10758639119626423
KLRRELRPRRR	11	Unmodified	_KLRRELRPRRR_					0	0	0			REV__ENST00000557385.1_1_X:119384635-119386530:+|nuORF	REV__ENST00000557385.1_1_X:119384635-119386530:+|nuORF	MSMS	HCT116MG_D190212_S2	2	768.6876220703125	2	768.495116	1534.97568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.917	1	52.728	52.228	53.228	-0.18922								0	0	0	0.96208	1	20339	20339		0	0	1		+		17133	14908	10482	10535	16453	16453					0.22958996936017684
KLSDSRIAL	9	Unmodified	_KLSDSRIAL_					0	0	0		ENST00000278882.8_1_20:29623179-29633907:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	ENST00000278882.8_1_20:29623179-29633907:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	501.8098449707031	2	501.800749	1001.58694	0.47924	0.00024048	-0.11946	-5.9943E-05	0.35979	0.00018054	502.3022271737607	35.049	0.155	34.891	34.813	34.968	-0.15834					4	2	2	0	0	0	0.045269	1	13069	13069		49.527	21.898	1	7486500			17134	2211	10483	10536	16454	16454					0.08621431851599937
KLSEIPLTL	9	Unmodified	_KLSEIPLTL_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	507.3163146972656	2	507.3157	1012.61685	0.28468	0.00014442	-0.42947	-0.00021788	-0.14478	-7.3451E-05	507.31567191245813	53.081	0.3114	52.892	52.706	53.018	-0.18922					13	5	4	0	0	0	0.030723	1	20392	20392		85.642	9.8807	1	24899000			17135	253;254	10484	10537	16455	16455					0.11104370796954299
KLSEKIDQL	9	Unmodified	_KLSEKIDQL_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	HCT116MG_D190212_S1	1	537.31396484375	2	537.313689	1072.61282	0.38738	0.00020814	-0.075917	-4.0791E-05	0.31146	0.00016735	537.3136202737063	32.525	0.20869	32.525	32.378	32.587	0					7	3	3	0	0	0	0.0158	1	12027	12027		100.71	13.45	1	6398000			17136	3150	10485	10538	16456	16456					0.07942281303235177
KLSEKIDQL	9	Unmodified	_KLSEKIDQL_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7643432617188	2	537.313689	1072.61282	0.55715	0.00029937	0.072094	3.8737E-05	0.62925	0.0003381	537.3137451218203	32.771	0.25868	32.56	32.43	32.688	-0.21135					7	4	2	0	0	0	0.022505	2	12151	12151;12167		93.938	22.23	1	24946000			17137	3150	10485	10538	16457;16458	16457					0.07942281303235177
KLSLVAAML	9	Oxidation (M)	_KLSLVAAM(Oxidation (M))L_		KLSLVAAM(1)L		KLSLVAAM(64)L	0	0	1		ENSG00000044574|ENST00000324460|HSPA5;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	HCT116MG_D190212_S2	2	481.29107666015625	2	481.291171	960.567789	0.41651	0.00020046	-0.0049423	-2.3787E-06	0.41157	0.00019808	481.2909958928957	47.174	0.41223	47.052	46.769	47.182	-0.12175					9	7	2	0	0	0	0.071914	1	18022	18022		63.961	25.987	1	15964000			17138	1021	10486	10539	16459	16459		17			0.08592759236341863
KLSLVAAML	9	Unmodified	_KLSLVAAML_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2937316894531	2	473.293714	944.572874	0.27837	0.00013175	-0.1587	-7.5113E-05	0.11967	5.6639E-05	473.2935890259163	55.539	0.20692	55.354	55.225	55.431	-0.18565					8	3	3	0	0	0	0.16306	1	21434	21434		45.7	1.8413	1	119040000			17139	1021	10486	10540	16460	16460					0.09837063098962062
KLSLVAAML	9	Unmodified	_KLSLVAAML_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;HSPA5|p.N522Ifs*12|1|0.36|ENSG00000044574|chr9:125236992-125236992|T/-|frameshift_variant;HSPA5|p.E217Rfs*76|1|0.2|ENSG00000044574|chr9:125239288-125239288|C/-|frameshift_variant	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	HCT116MG_D190212_S1	1		2	473.293714	944.572874	0.29342	0.00013887	0.14041	6.6454E-05	0.43382	0.00020533	473.29371782560634	55.374	0.15299	55.374	55.247	55.4	0	0.010422	0.00025196	NaN	45.7	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35934000			17140	1021	10486	10540							0.09837063098962062
KLSSPGLP	8	Unmodified	_KLSSPGLP_					0	0	0		nc|ENSG00000013619|Q13495-4|MAMLD1;ENSG00000013619|ENST00000370401|MAMLD1;nc|ENSG00000013619|Q13495-3|MAMLD1	nc|ENSG00000013619|Q13495-4|MAMLD1	nc|ENSG00000013619|Q13495-4|MAMLD1	MSMS	HCT116MG_D190212_S4	4	399.73779296875	2	399.739628	797.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.377	1	42.002	41.502	42.502	-0.37565								0	0	0	0.8837	1	15573	15573		5.7604	0	1				17141	917	10487	10541	16461	16461					0.05787014840052507
KLSSRKEGAP	10	Unmodified	_KLSSRKEGAP_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MSMS	HCT116MG_D190212_S4	4	358.2070617675781	3	358.208495	1071.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.886	1	24.618	24.118	25.118	-0.26881								0	0	0	0.96263	1	8792	8792		1.9064	0.45126	1		+		17142	10960	10488	10542	16462	16462					0.07071932737562747
KLSTIKRHIRQ	11	Unmodified	_KLSTIKRHIRQ_					0	0	0		ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	MSMS	HCT116MG_D190212_S1	1	690.4346313476562	2	690.433327	1378.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.234	1	60.234	59.734	60.734	0								0	0	0	0.96121	1	23215	23215		0.30703	0	1				17143	5968	10489	10543	16463	16463					0.17782901045052313
KLTESNQKL	9	Unmodified	_KLTESNQKL_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	HCT116MG_D190212_S1	1	530.80322265625	2	530.803488	1059.59242	0.36322	0.0001928	0.17646	9.3665E-05	0.53968	0.00028646	530.8033897053776	21.248	0.21281	21.248	21.12	21.333	0					8	3	3	0	0	0	0.0052024	1	7475	7475		135.86	50.222	1	4911600			17144	2791	10490	10544	16464	16464					0.0650111064342127
KLTESNQKL	9	Unmodified	_KLTESNQKL_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.P676Rfs*39|1|0.31|ENSG00000123143|chr19:14469390-14469391|-/G|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	HCT116MG_D190212_S2	2	530.8037719726562	2	530.803488	1059.59242	0.32186	0.00017085	0.4512	0.0002395	0.77306	0.00041034	530.8036659737053	21.904	0.26048	21.519	21.323	21.583	-0.38503					8	4	3	0	0	0	0.0064513	1	7751	7751		124.95	42.424	1	17674000			17145	2791	10490	10544	16465	16465					0.0650111064342127
KLTFEVVHL	9	Unmodified	_KLTFEVVHL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.L1313Ffs*10|1|0.43|ENSG00000123104|chr12:26599208-26599209|-/A|frameshift_variant;ITPR2|p.N1390Mfs*17|1|0.07|ENSG00000123104|chr12:26596973-26596973|C/-|frameshift_variant;ITPR2|p.K1802Sfs*13|2|0.65|ENSG00000123104|chr12:26487217-26487217|T/-|frameshift_variant;ITPR2|p.R1837Kfs*4|1|0.24|ENSG00000123104|chr12:26487112-26487113|-/T|frameshift_variant;ITPR2|p.R1837Gfs*7|1|0.09|ENSG00000123104|chr12:26487113-26487113|T/-|frameshift_variant;ITPR2|p.R869Q|1|0.34|ENSG00000123104|chr12:26654110-26654110|C/T|missense_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MSMS	HCT116MG_D190212_S1	1	543.319580078125	2	543.321317	1084.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.899	1	14.899	14.399	15.399	0								0	0	0	0.76759	1	4911	4911		9.3831	0.78985	1				17146	2789	10491	10545	16466	16466					0.08915192891095103
KLTIPKIV	8	Unmodified	_KLTIPKIV_					0	0	0			REV__PLXNA4|p.M966Cfs*7|1|0.29|ENSG00000221866|chr7:132187572-132187572|C/-|frameshift_variant	REV__PLXNA4|p.M966Cfs*7|1|0.29|ENSG00000221866|chr7:132187572-132187572|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	456.31689453125	2	456.318046	910.621539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.585	1	58.585	58.085	59.085	0								0	0	0	0.8837	1	22573	22573		1.8442	0	1		+		17147	14289	10492	10546	16467	16467					0.16265299730366678
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	HCT116MG_D190212_S2	2	367.2704162597656	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.322	1	48.178	47.678	48.678	-0.1437								0	0	0	0.77025	1	18458	18458		0	0	1				17148	7950	10493	10547	16468	16468					0.23980897501269283
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	HCT116MG_D190212_S2	2	367.2687072753906	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.421	1	61.279	60.779	61.779	-0.14227								0	0	0	0.77025	1	23790	23790		0	0	1				17149	7950	10493	10547	16469	16469					0.23980897501269283
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	HCT116MG_D190212_S2	2	367.26953125	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.712	1	61.57	61.07	62.07	-0.14227								0	0	0	0.77025	1	23907	23907		0	0	1				17150	7950	10493	10547	16470	16470					0.23980897501269283
KLTKKIKKL	9	Unmodified	_KLTKKIKKL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MSMS	HCT116MG_D190212_S2	2	367.2697448730469	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.266	1	62.131	61.631	62.631	-0.13585								0	0	0	0.77025	1	24131	24131		0	0	1				17151	7950	10493	10547	16471	16471					0.23980897501269283
KLVDPERDMSL	11	Unmodified	_KLVDPERDMSL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-SECPEP	HCT116MG_D190212_S1	1	652.3410034179688	2	651.839745	1301.66494	0.15921	0.00010378	-0.31072	-0.00020254	-0.15151	-9.8762E-05	651.839614819492	38.652	0.25993	38.652	38.488	38.748	0					6	4	2	0	0	0	4.8565E-05	1	14497	14497		154.04	94.668	1	20171000			17152	3346	10494	10548	16472	16472					0.026170766546783852
KLVDPERDMSL	11	Unmodified	_KLVDPERDMSL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	651.8391723632812	2	651.839745	1301.66494	0.52401	0.00034157	-0.15007	-9.7821E-05	0.37394	0.00024375	651.8396466920112	38.659	0.37223	38.575	38.33	38.702	-0.084621					14	6	3	0	0	0	5.1512E-07	1	14537	14537		183.95	107.13	1	34925000			17153	3346	10494	10548	16473	16473					0.026170766546783852
KLVDPERDMSL	11	Unmodified	_KLVDPERDMSL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	434.8954772949219	3	434.895589	1301.66494	-0.060684	-2.6391E-05	-0.184	-8.0019E-05	-0.24468	-0.00010641	434.8955214414271	38.642	0.26548	38.558	38.437	38.702	-0.084618					7	4	2	0	0	0	0.375	1	14556	14556		40.714	27.858	1	15949000			17154	3346	10494	10548	16474	16474					0.026170766546783852
KLVEFDFLGA	10	Unmodified	_KLVEFDFLGA_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MSMS	HCT116MG_D190212_S2	2	569.8109130859375	2	569.810782	1137.60701	0.49996	0.00028488	-0.32064	-0.0001827	0.17932	0.00010218	569.8106543077912	56.381	0.15519	56.198	56.104	56.259	-0.18261					8	2	4	0	0	0	0.037651	1	21769	21769		96.367	40.19	1	73872000			17155	918	10495	10549	16475	16475					0.04371182791555839
KLVEKVVK	8	Unmodified	_KLVEKVVK_					0	0	0			REV__tr|U7T234|U7T234_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00830PE=4SV=1	REV__tr|U7T234|U7T234_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00830PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	471.8210754394531	2	471.820953	941.627353	0.49156	0.00023193	-0.0064946	-3.0643E-06	0.48506	0.00022886	471.82089865456436	34.48	0.25774	34.305	34.175	34.433	-0.17512					7	4	2	0	0	0	0.84507	1	12859	12859		6.2058	0.9089	1	16458000	+		17156	17913	10496	10550	16476	16476					0.15420398242042666
KLVKEVIAV	9	Unmodified	_KLVKEVIAV_					0	0	0		ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MULTI-MSMS	HCT116MG_D190212_S2	2	499.833984375	2	499.83406	997.653567	0.38569	0.00019278	-0.075867	-3.7921E-05	0.30983	0.00015486	499.83392935383574	35.554	0.20586	35.412	35.335	35.541	-0.14245					8	3	3	0	0	0	0.10482	1	13298	13298		57.249	19.074	1	27510000			17157	2006	10497	10551	16477	16477					0.1546466741350514
KLVKLKYRKVQ	11	Unmodified	_KLVKLKYRKVQ_					0	0	0		ADAM28|p.D196Y|1|0.18|ENSG00000042980|chr8:24320245-24320245|G/T|missense_variant	ADAM28|p.D196Y|1|0.18|ENSG00000042980|chr8:24320245-24320245|G/T|missense_variant	ADAM28|p.D196Y|1|0.18|ENSG00000042980|chr8:24320245-24320245|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	701.8999633789062	2	701.966471	1401.91839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.972	1	28.972	28.472	29.472	0								0	0	0	0.96149	1	10572	10572		0.30703	0	1				17158	39	10498	10552	16478	16478					0.23350716887080125
KLVRKKKKIP	10	Unmodified	_KLVRKKKKIP_					0	0	0		ENSG00000175809|ENST00000323684|CBLL2	ENSG00000175809|ENST00000323684|CBLL2	ENSG00000175809|ENST00000323684|CBLL2	MSMS	HCT116MG_D190212_S4	4	619.4465942382812	2	619.445175	1236.8758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.166	1	58.889	58.389	59.389	-0.27731								0	0	0	0.96937	1	22259	22259		0.40072	0.093686	1				17159	5395	10499	10553	16479	16479					0.26683366549536913
KLVSRKTRAR	10	Unmodified	_KLVSRKTRAR_					0	0	0			REV__ENST00000566044.5_1_16:47495210-47497806:+|nuORF	REV__ENST00000566044.5_1_16:47495210-47497806:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	405.5981140136719	3	405.598317	1213.77312	0.044508	1.8053E-05	-0.63285	-0.00025668	-0.58834	-0.00023863	405.5979743885582	54.409	0.30565	54.409	54.179	54.485	0					13	5	4	0	0	0	0.87343	1	20869	20869		5.0475	1.7279	1	167420000	+		17160	16539	10500	10554	16480	16480					0.17478673810774126
KLVSRKTRAR	10	Unmodified	_KLVSRKTRAR_					0	0	0			REV__ENST00000566044.5_1_16:47495210-47497806:+|nuORF	REV__ENST00000566044.5_1_16:47495210-47497806:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	405.598317	1213.77312	0.044508	1.8053E-05	-0.63285	-0.00025668	-0.58834	-0.00023863	405.5979743885582	54.409	0.30565	54.409	54.179	54.485	0	0	0	NaN	5.0475	13	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167420000	+		17161	16539	10500	10554							0.17478673810774126
KLVTVVKP	8	Unmodified	_KLVTVVKP_					0	0	0			REV__ENSG00000166152|ENST00000299191|C16orf78	REV__ENSG00000166152|ENST00000299191|C16orf78	MSMS	HCT116MG_D190212_S1	1	442.3026428222656	2	442.302396	882.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.859	1	21.859	21.359	22.359	0								0	0	0	0.8837	1	7711	7711		12.532	3.9383	1		+		17162	13091	10501	10555	16481	16481					0.14424726696267953
KLVYRKILRKM	11	Unmodified	_KLVYRKILRKM_					0	0	0			REV__nc|ENSG00000069018|Q9HCX4-2|TRPC7	REV__nc|ENSG00000069018|Q9HCX4-2|TRPC7	MSMS	HCT116MG_D190212_S1	1	724.469482421875	2	724.468324	1446.92209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.946	1	50.946	50.446	51.446	0								0	0	0	0.96149	1	19452	19452		0.30703	0.03801	1		+		17163	10741	10502	10556	16482	16482					0.21651063389299452
KLWAFLTLF	9	Unmodified	_KLWAFLTLF_					0	0	0		HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|30|1|sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|30|1|sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|30|1|sense	MSMS	HCT116MG_D190212_S3	3	380.22784423828125	3	380.226827	1137.65865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.886	1	57.611	57.111	58.111	-0.27434								0	0	0	0.76967	1	22008	22008		1.0715	0	1				17164	9217	10503	10557	16483	16483					0.09532971276121316
KLWDPNEFAV	10	Unmodified	_KLWDPNEFAV_					0	0	0		EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant;EFR3A|p.F760Lfs*4|1|0.26|ENSG00000132294|chr8:132002673-132002673|T/-|frameshift_variant;nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant	EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	610.3135986328125	2	609.811313	1217.60807	0.43417	0.00026476	0.21203	0.0001293	0.64619	0.00039406	609.8114667480219	53.077	0.26009	52.887	52.758	53.018	-0.18922					7	4	2	0	0	0	0.032631	2	20416	20416;20427		100.09	47.822	1	22867000			17165	760	10504	10558	16484;16485	16484					0.007973971604542385
KLWEAESKL	9	Unmodified	_KLWEAESKL_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	MULTI-MSMS	HCT116MG_D190212_S1	1	552.3081665039062	2	552.308406	1102.60226	0.2816	0.00015553	0.38245	0.00021123	0.66405	0.00036676	552.8100647798124	36.809	0.46782	36.809	36.522	36.99	0					13	8	3	0	0	0	0.0035707	1	13742	13742		174.48	108.03	1	21818000			17166	4392	10505	10559	16486	16486					0.05506298648788288
KLWEAESKL	9	Unmodified	_KLWEAESKL_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	MULTI-MSMS	HCT116MG_D190212_S2	2	552.3088989257812	2	552.308406	1102.60226	0.37958	0.00020965	0.11602	6.408E-05	0.49561	0.00027373	552.3084157157525	36.794	0.4127	36.679	36.499	36.912	-0.11478					15	7	3	0	0	0	0.0035417	1	13777	13777		171.46	97.265	1	62324000			17167	4392	10505	10559	16487	16487					0.05506298648788288
KLWEGLTEL	9	Unmodified	_KLWEGLTEL_					0	0	0		ENST00000464324.5_1_11:64494776-64507712:-|nuORF;RASGRP2|p.R494Afs*25|1|0.15|ENSG00000068831|chr11:64730128-64730128|C/-|frameshift_variant;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2	ENST00000464324.5_1_11:64494776-64507712:-|nuORF	ENST00000464324.5_1_11:64494776-64507712:-|nuORF	MSMS	HCT116MG_D190212_S2	2	544.8037719726562	2	544.802957	1087.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.764	1	54.576	54.076	55.076	-0.18822								0	0	0	0.040848	1	21093	21093		72.968	10.395	1				17168	1209	10506	10560	16488	16488					0.05106896274492101
KLWEMDNMLI	10	Unmodified	_KLWEMDNMLI_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	646.822998046875	2	646.822509	1291.63047	0.75656	0.00048936	-0.16812	-0.00010875	0.58843	0.00038061	646.8225458174147	56.945	0.1566	56.766	56.687	56.844	-0.17904					8	2	4	0	0	0	0.051175	1	22005	22005		86.332	34.702	1	27661000			17169	5527	10507	10561	16489	16489					-0.0036846275777406845
KLWESPNVL	9	Unmodified	_KLWESPNVL_					0	0	0		nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000471809.5_1_22:37159849-37172159:-|nuORF	nc|ENSG00000100360|Q9BW83-2|IFT27	nc|ENSG00000100360|Q9BW83-2|IFT27	MSMS	HCT116MG_D190212_S1	1	543.3028564453125	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.945	1	47.945	47.445	48.445	0								0	0	0	0.063593	1	18230	18230		66.457	14.827	1				17170	1698	10508	10562	16490	16490					0.05278315994382865
KLWLVVPP	8	Unmodified	_KLWLVVPP_					0	0	0			REV__ENST00000560329.1_1_15:73192182-73192437:-|nuORF	REV__ENST00000560329.1_1_15:73192182-73192437:-|nuORF	MSMS	HCT116MG_D190212_S4	4	476.30682373046875	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.358	1	32.976	32.476	33.476	-0.38223								0	0	0	0.8837	1	12142	12142		0.79363	0	1		+		17171	16488	10509	10563	16491	16491					0.11805030558889484
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		nc|ENSG00000143393|Q9UBF8-2|PI4KB;nc|ENSG00000143393|Q9UBF8-3|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-MSMS	HCT116MG_D190212_S2	2	573.7954711914062	2	573.795132	1145.57571	0.37677	0.00021619	0.035818	2.0552E-05	0.41259	0.00023674	573.7949611824736	52.819	0.25737	52.63	52.449	52.706	-0.18922					8	4	2	0	0	0	0.061422	1	20316	20316		69.105	20.759	1	18320000			17172	9484	10510	10564	16492	16492					0.008746097574885425
KLYGKPIRV	9	Unmodified	_KLYGKPIRV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	HCT116MG_D190212_S2	2	358.56573486328125	3	358.565843	1072.6757	-0.043799	-1.5705E-05	-0.074319	-2.6648E-05	-0.11812	-4.2353E-05	358.565774580301	27.141	0.26351	26.789	26.659	26.923	-0.35254					10	4	3	0	0	0	0.16285	1	9871	9871		45.74	28.297	1	21066000			17173	3803	10511	10565	16493	16493					0.14226891881935444
KLYGKPIRV	9	Unmodified	_KLYGKPIRV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;SF3B4|p.R354Efs*26|1|0.11|ENSG00000143368|chr1:149923868-149923868|G/-|frameshift_variant	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	HCT116MG_D190212_S2	2	537.3453979492188	2	537.345126	1072.6757	0.58708	0.00031546	-0.30444	-0.00016359	0.28263	0.00015187	537.3449571628803	27.145	0.21154	26.792	26.659	26.871	-0.35254					5	3	2	0	0	0	0.49039	1	9873	9873		24.021	11.489	1	21601000			17174	3803	10511	10565	16494	16494					0.14226891881935444
KLYIMALAL	9	Unmodified	_KLYIMALAL_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1;REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	518.3175659179688	2	518.317189	1034.61982	0.3195	0.0001656	0.018536	9.6078E-06	0.33804	0.00017521	518.3171453261679	47.698	1.1925	47.698	47.062	48.254	0					46	23	3	0	0	0	0.71345	1	18058	18058		4.3292	1.7518	1	109130000	+		17175	12643;15733	10512	10566	16495	16495					0.10389922650097105
KLYLRRIIKKR	11	Unmodified	_KLYLRRIIKKR_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S1	1	496.3400573730469	3	496.340067	1485.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.462	1	57.462	56.962	57.962	0								0	0	0	0.96192	1	22112	22112		0.08335	0.010087	1		+		17176	12615	10513	10567	16496	16496					0.2748120328094501
KLYLRRIIKKR	11	Unmodified	_KLYLRRIIKKR_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S1	1	496.2875061035156	3	496.340067	1485.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.575	1	57.575	57.075	58.075	0								0	0	0	0.96194	1	22158	22158		0.073264	0	1		+		17177	12615	10513	10567	16497	16497					0.2748120328094501
KLYLRRIIKKR	11	Unmodified	_KLYLRRIIKKR_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S1	1	496.3400573730469	3	496.340067	1485.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.273	1	64.273	63.773	64.773	0								0	0	0	0.96208	1	24800	24800		0	0	1		+		17178	12615	10513	10567	16498	16498					0.2748120328094501
KLYLRRIIKKR	11	Unmodified	_KLYLRRIIKKR_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S2	2	496.33990478515625	3	496.340067	1485.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6853	1	4.5665	4.0665	5.0665	-0.11871								0	0	0	0.96208	1	1476	1476		0	0	1		+		17179	12615	10513	10567	16499	16499					0.2748120328094501
KLYLRRIIKKR	11	Unmodified	_KLYLRRIIKKR_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S2	2	496.3399658203125	3	496.340067	1485.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5298	1	5.3816	4.8816	5.8816	-0.14816								0	0	0	0.96208	1	1751	1751		0	0	1		+		17180	12615	10513	10567	16500	16500					0.2748120328094501
KLYRPIWKPN	10	Unmodified	_KLYRPIWKPN_					0	0	0		ENST00000510769.5_2_3:130799307-130828713:+|nuORF	ENST00000510769.5_2_3:130799307-130828713:+|nuORF	ENST00000510769.5_2_3:130799307-130828713:+|nuORF	MSMS	HCT116MG_D190212_S1	1	657.8887939453125	2	657.88769	1313.76083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.8	1	51.8	51.3	52.3	0								0	0	0	0.95648	1	19800	19800		3.2813	0.78282	1				17181	8498	10514	10568	16501	16501					0.11649637347750286
KLYRPIWKPN	10	Unmodified	_KLYRPIWKPN_					0	0	0		ENST00000510769.5_2_3:130799307-130828713:+|nuORF	ENST00000510769.5_2_3:130799307-130828713:+|nuORF	ENST00000510769.5_2_3:130799307-130828713:+|nuORF	MSMS	HCT116MG_D190212_S1	1	657.8877563476562	2	657.88769	1313.76083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.323	1	53.323	52.823	53.823	0								0	0	0	0.95648	1	20419	20419		3.2813	0	1				17182	8498	10514	10568	16502	16502					0.11649637347750286
KMADIEYRL	9	Unmodified	_KMADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	HCT116MG_D190212_S1	1	569.7999267578125	2	569.799891	1137.58523	0.14139	8.0565E-05	0.14754	8.4068E-05	0.28893	0.00016463	569.7998636420131	39.839	0.25971	39.839	39.709	39.969	0					10	4	3	0	0	0	0.0034454	1	14979	14979		176.43	76.336	1	33116000			17183	2292	10515	10569	16503	16503					0.021940547713484193
KMADIEYRL	9	Unmodified	_KMADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	HCT116MG_D190212_S1	1	380.20184326171875	3	380.202353	1137.58523	-0.32175	-0.00012233	-0.47438	-0.00018036	-0.79613	-0.00030269	380.20212165826274	39.891	0.208	39.891	39.761	39.969	0					5	3	2	0	0	0	0.15281	1	14981	14981		47.732	13.51	1	10967000			17184	2292	10515	10569	16504	16504					0.021940547713484193
KMADIEYRL	9	Unmodified	_KMADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	HCT116MG_D190212_S2	2	569.7998657226562	2	569.799891	1137.58523	0.1784	0.00010165	-0.19692	-0.0001122	-0.018519	-1.0552E-05	569.7997700024649	39.889	0.30949	39.816	39.636	39.945	-0.072838					13	5	3	0	0	0	0.0089956	1	15028	15028		135.86	61.664	1	123390000			17185	2292	10515	10569	16505	16505					0.021940547713484193
KMADIEYRL	9	Unmodified	_KMADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	HCT116MG_D190212_S2	2	380.2022705078125	3	380.202353	1137.58523	-0.37689	-0.0001433	-0.080522	-3.0615E-05	-0.45741	-0.00017391	380.2023185104076	39.901	0.20624	39.828	39.687	39.894	-0.072838					6	3	2	0	0	0	0.31258	1	15055	15055		29.437	5.6361	1	18636000			17186	2292	10515	10569	16506	16506					0.021940547713484193
KMADIEYRL	9	Unmodified	_KMADIEYRL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MATCH	HCT116MG_D190212_S3	3		2	569.799891	1137.58523	0.28782	0.000164	-0.66602	-0.0003795	-0.3782	-0.0002155	570.30100332532	40.088	0.20586	39.787	39.645	39.851	-0.30137	-0.02727	-0.00062308	NaN	176.43	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5463300			17187	2292	10515	10569							0.021940547713484193
KMAEEKLTHKM	11	Unmodified	_KMAEEKLTHKM_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MSMS	HCT116MG_D190212_S1	1	449.23699951171875	3	449.237069	1344.68938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.375	1	19.375	18.875	19.875	0								0	0	0	0.92285	1	6715	6715		10.768	6.6926	1				17188	2583	10516	10570	16507	16507					0.030820135365274837
KMAEEKLTHKM	11	Unmodified	_KMAEEKLTHKM_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S2	2	673.3519287109375	2	673.351965	1344.68938	0.19379	0.00013049	0.28416	0.00019134	0.47795	0.00032183	673.352485850939	20.166	0.20804	19.791	19.661	19.869	-0.37503					6	3	2	0	0	0	0.033153	1	7053	7053		124.34	67.233	1	21790000			17189	2583	10516	10570	16508	16508					0.030820135365274837
KMAEEKLTHKM	11	Unmodified	_KMAEEKLTHKM_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	HCT116MG_D190212_S2	2	449.2369384765625	3	449.237069	1344.68938	0.05036	2.2624E-05	-0.40212	-0.00018065	-0.35176	-0.00015802	449.23699805545834	20.169	0.20804	19.794	19.661	19.869	-0.37527					8	3	3	0	0	0	0.31279	1	7057	7057		53.367	40.849	1	19430000			17190	2583	10516	10570	16509	16509					0.030820135365274837
KMAEMLVEL	9	Unmodified	_KMAEMLVEL_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	532.2802734375	2	532.279946	1062.54534	0.39603	0.0002108	-0.32391	-0.00017241	0.072122	3.8389E-05	532.2798352296711	54.056	0.25729	53.867	53.687	53.945	-0.1894					11	4	3	0	0	0	0.095731	1	20804	20804		72.968	26.947	1	244590000			17191	5527	10517	10571	16510	16510					0.016567917764405138
KMAEMLVEL	9	Unmodified	_KMAEMLVEL_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	532.279946	1062.54534	0.44014	0.00023428	-0.056871	-3.0272E-05	0.38327	0.000204	532.2800260612909	53.801	0.25601	53.801	53.668	53.924	0	-0.054473	0.00020243	NaN	72.968	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131070000			17192	5527	10517	10571							0.016567917764405138
KMAEMLVEL	9	Unmodified	_KMAEMLVEL_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	532.279946	1062.54534	0.4081	0.00021722	-0.2407	-0.00012812	0.1674	8.9104E-05	532.2795254630136	54.199	0.20902	53.899	53.769	53.978	-0.29946	0.043302	6.7336E-06	NaN	72.968	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1710000			17193	5527	10517	10571							0.016567917764405138
KMDASLGNL	9	Unmodified	_KMDASLGNL_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	HCT116MG_D190212_S1	1	474.7447814941406	2	474.744585	947.474617	0.012254	5.8174E-06	0.30871	0.00014656	0.32097	0.00015238	474.7445502252084	39.839	0.31181	39.839	39.657	39.969	0					11	5	3	0	0	0	0.034046	1	14947	14947		82.529	13.424	1	19831000			17194	6107	10518	10572	16511	16511					-0.001221652168737819
KMDASLGNLFA	11	Oxidation (M)	_KM(Oxidation (M))DASLGNLFA_		KM(1)DASLGNLFA		KM(55)DASLGNLFA	0	0	1		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	HCT116MG_D190212_S1	1	591.7954711914062	2	591.794806	1181.57506	0.56328	0.00033334	0.48154	0.00028497	1.0448	0.00061832	591.7950896617059	49.517	0.2582	49.517	49.389	49.647	0					9	4	3	0	0	0	0.39766	1	18879	18879		55.235	28.967	1	22770000			17195	6107	10519	10573	16512	16512		130			-0.008465529538852934
KMDASLGNLFA	11	Unmodified	_KMDASLGNLFA_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	HCT116MG_D190212_S1	1	583.7976684570312	2	583.797349	1165.58014	0.6676	0.00038974	-0.21754	-0.000127	0.45006	0.00026274	583.7972148183769	53.076	0.30724	53.076	52.897	53.204	0					15	5	4	0	0	0	0.19477	1	20312	20312		100.71	34.252	1	97675000			17196	6107	10519	10574	16513	16513					0.0039775090874627494
KMDDLNLHY	9	Oxidation (M)	_KM(Oxidation (M))DDLNLHY_		KM(1)DDLNLHY		KM(82)DDLNLHY	0	0	1		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	583.2720336914062	2	582.771331	1163.52811	0.63919	0.0003725	-0.21935	-0.00012783	0.41984	0.00024467	582.7713523330318	33.478	0.20807	33.478	33.348	33.556	0					6	3	2	0	0	0	0.035298	1	12402	12402		81.915	43.941	1	9539100			17197	4957	10520	10575	16514	16514		106			-0.04711412505048429
KMDDLNLHY	9	Oxidation (M)	_KM(Oxidation (M))DDLNLHY_		KM(1)DDLNLHY		KM(76)DDLNLHY	0	0	1		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	583.2730102539062	2	582.771331	1163.52811	0.74882	0.00043639	0.21641	0.00012612	0.96522	0.0005625	583.2730604525741	33.621	0.20773	33.428	33.327	33.534	-0.19296					5	3	2	0	0	0	0.080067	1	12506	12506		75.571	39.444	1	21956000			17198	4957	10520	10575	16515	16515		106			-0.04711412505048429
KMDDLNLHY	9	Oxidation (M)	_KM(Oxidation (M))DDLNLHY_		KM(1)DDLNLHY		KM(50)DDLNLHY	0	0	1		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	582.7726440429688	2	582.771331	1163.52811	0.45016	0.00026234	-0.13852	-8.0723E-05	0.31164	0.00018162	582.7718732529614	33.879	0.31134	33.585	33.352	33.663	-0.29419					8	5	2	0	0	0	0.14376	1	12465	12465		49.527	30.27	1	4946500			17199	4957	10520	10575	16516	16516		106			-0.04711412505048429
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	574.7738647460938	2	574.773874	1147.53319	-0.084618	-4.8636E-05	-0.22161	-0.00012738	-0.30623	-0.00017601	574.7738245236783	37.994	0.25977	37.994	37.811	38.071	0					11	4	3	0	0	0	0.01386	1	14214	14214		103.82	41.251	1	48628000			17200	4957	10520	10576	16517	16517					-0.03467108642416861
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	574.773681640625	2	574.773874	1147.53319	0.12633	7.261E-05	0.21602	0.00012416	0.34234	0.00019677	574.7740139260096	38.022	0.36167	37.929	37.753	38.115	-0.093006					18	6	4	0	0	0	4.4167E-08	1	14254	14254		225.01	121.26	1	225340000			17201	4957	10520	10576	16518	16518					-0.03467108642416861
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	383.8525390625	3	383.518341	1147.53319	-0.31017	-0.00011895	0.45517	0.00017457	0.145	5.5611E-05	383.8528975844882	38.027	0.20626	37.934	37.805	38.011	-0.09301					5	3	2	0	0	0	0.43775	1	14303	14303		14.405	2.9107	1	16186000			17202	4957	10520	10576	16519	16519					-0.03467108642416861
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	574.7741088867188	2	574.773874	1147.53319	0.48315	0.0002777	-0.42136	-0.00024219	0.061786	3.5513E-05	574.7737234269416	38.212	0.25901	37.911	37.781	38.04	-0.30137					11	4	3	0	0	0	0.0029864	1	14156	14156		181.69	99.801	1	20641000			17203	4957	10520	10576	16520	16520					-0.03467108642416861
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENST00000550564.1_1_12:53468877-53473168:-|nuORF;ENSG00000167778|ENST00000301463|SPRYD3	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENST00000550564.1_1_12:53468877-53473168:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	574.7741088867188	2	574.773874	1147.53319	0.26555	0.00015263	0.44365	0.000255	0.7092	0.00040763	574.7741320231763	38.364	0.18581	37.981	37.864	38.049	-0.38283					5	3	2	0	0	0	0.29516	1	14080	14080		31.268	7.2478	1	4605300			17204	4957	10520	10576	16521	16521					-0.03467108642416861
KMDDPDYWRTV	11	Unmodified	_KMDDPDYWRTV_					0	0	0		ENSG00000261236|ENST00000569669|BOP1;nc|ENSG00000261236|Q14137-2|BOP1	ENSG00000261236|ENST00000569669|BOP1	ENSG00000261236|ENST00000569669|BOP1	MULTI-MSMS	HCT116MG_D190212_S2	2	713.3734130859375	2	713.327002	1424.63945	1.1955	0.00085278	-0.29194	-0.00020825	0.90355	0.00064453	713.8281082980145	40.684	0.25723	40.615	40.468	40.725	-0.069626					7	4	2	0	0	0	0.71643	1	15379	15379		15.739	8.1297	1	15550000			17205	6629	10521	10577	16522	16522					-0.055883978677684354
KMDESKHEI	9	Unmodified	_KMDESKHEI_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S1	1	558.7716674804688	2	558.771331	1115.52811	0.50076	0.00027981	0.27598	0.00015421	0.77675	0.00043402	558.7712959298261	18.063	0.20847	18.063	17.933	18.141	0					6	3	2	0	0	0	0.13424	1	6201	6201		51.415	21.575	1	4420300			17206	3460	10522	10578	16523	16523					-0.025034125050069633
KMDESKHEI	9	Unmodified	_KMDESKHEI_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	559.2730712890625	2	558.771331	1115.52811	0.049826	2.7841E-05	0.38169	0.00021328	0.43152	0.00024112	558.771635806211	18.814	0.2607	18.451	18.321	18.581	-0.36325					9	4	3	0	0	0	0.010825	1	6502	6502		111.31	43.471	1	22604000			17207	3460	10522	10578	16524	16524					-0.025034125050069633
KMDESKHEI	9	Unmodified	_KMDESKHEI_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.P1628Rfs*20|1|0.44|ENSG00000137076|chr9:35707144-35707144|G/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	372.84991455078125	3	372.849979	1115.52811	-0.52183	-0.00019456	0.21304	7.9433E-05	-0.30879	-0.00011513	372.8501082802702	18.814	0.2607	18.451	18.321	18.581	-0.36325					6	4	2	0	0	0	0.45684	1	6512	6512		18.721	2.9826	1	10647000			17208	3460	10522	10578	16525	16525					-0.025034125050069633
KMDEVLYSI	9	Unmodified	_KMDEVLYSI_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	HCT116MG_D190212_S1	1	549.2813720703125	2	549.281	1096.54745	0.46645	0.00025621	0.22597	0.00012412	0.69242	0.00038033	549.2811208807803	49.325	0.20563	49.325	49.183	49.389	0					8	3	3	0	0	0	0.034046	1	18808	18808		82.529	19.957	1	25739000			17209	3734	10523	10579	16526	16526					0.0030354378586707753
KMDEVLYSI	9	Unmodified	_KMDEVLYSI_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MATCH	HCT116MG_D190212_S2	2		2	549.281	1096.54745	0.20748	0.00011396	-0.42921	-0.00023576	-0.22174	-0.0001218	549.2806984757572	49.481	0.25345	49.324	49.134	49.388	-0.15648	-0.00053304	-0.00059795	NaN	82.529	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13375000			17210	3734	10523	10579							0.0030354378586707753
KMDPVAYRV	9	Unmodified	_KMDPVAYRV_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7899169921875	2	539.789327	1077.5641	0.4565	0.00024641	0.51943	0.00028038	0.97592	0.00052679	539.7893834053666	32.632	0.26067	32.42	32.273	32.534	-0.21135					12	4	4	0	0	0	0.043159	1	12099	12099		78.06	45.755	1	24268000			17211	5232	10524	10580	16527	16527					0.028420894624787252
KMDRALLEL	9	Unmodified	_KMDRALLEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.E241Rfs*13|1|0.26|ENSG00000167658|chr19:3982316-3982316|C/-|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	544.8107299804688	2	544.810259	1087.60597	0.49034	0.00026714	0.075408	4.1083E-05	0.56575	0.00030823	544.8102778237262	46.042	0.35891	45.941	45.761	46.12	-0.1014					16	6	3	0	0	0	0.037825	1	17533	17533		80.676	13.332	1	78649000			17212	4945	10525	10581	16528	16528					0.06566645150996919
KMFLWFYLFIV	11	Unmodified	_KMFLWFYLFIV_					0	0	0			REV__KTN1|p.F24Y|1|0.29|ENSG00000126777|chr14:55612119-55612119|T/A|missense_variant	REV__KTN1|p.F24Y|1|0.29|ENSG00000126777|chr14:55612119-55612119|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	753.9156494140625	2	753.914527	1505.8145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.252	1	61.009	60.509	61.509	-0.24352								0	0	0	0.96141	1	23373	23373		0.35063	0	1		+		17213	16940	10526	10582	16529	16529					0.08182673735245771
KMFQVHQV	8	Unmodified	_KMFQVHQV_					0	0	0		nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	MULTI-MSMS	HCT116MG_D190212_S1	1	508.77117919921875	2	508.770937	1015.52732	0.53074	0.00027002	0.018732	9.5302E-06	0.54947	0.00027955	508.7711249142714	31.05	0.36447	31.05	30.815	31.18	0					11	6	3	0	0	0	0.043192	1	11432	11432		131.3	131.3	1	13815000			17214	3312	10527	10583	16530	16530					0.02017837636594777
KMFQVHQV	8	Unmodified	_KMFQVHQV_					0	0	0		nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	MULTI-MSMS	HCT116MG_D190212_S2	2	508.77239990234375	2	508.770937	1015.52732	0.55984	0.00028483	0.34734	0.00017672	0.90718	0.00046155	508.7714108208924	31.372	0.31026	31.123	30.94	31.25	-0.24883					11	5	3	0	0	0	0.53394	1	11585	11585		38.151	13.477	1	27950000			17215	3312	10527	10583	16531	16531					0.02017837636594777
KMGFSCRV	8	Unmodified	_KMGFSCRV_					0	0	0		ENST00000471887.1_1_7:18557286-18557502:+|nuORF	ENST00000471887.1_1_7:18557286-18557502:+|nuORF	ENST00000471887.1_1_7:18557286-18557502:+|nuORF	MSMS	HCT116MG_D190212_S2	2	464.6230773925781	2	464.23059	926.446628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.288	1	31.028	30.528	31.528	-0.25957								0	0	0	0.8837	1	11536	11536		7.9102	0.62092	1				17216	8166	10528	10584	16532	16532					-0.019537666779683605
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	HCT116MG_D190212_S2	2	468.76483154296875	2	468.764789	935.515025	0.29544	0.00013849	0.16184	7.5867E-05	0.45729	0.00021436	468.76465709639604	55.902	0.20596	55.717	55.587	55.793	-0.18565					9	3	3	0	0	0	0.31873	1	21581	21581		57.471	17.023	1	203310000			17217	1470	10529	10585	16533	16533					0.0446880117353885
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	468.764789	935.515025	0.28246	0.00013241	-0.68256	-0.00031996	-0.40011	-0.00018756	468.76434217906194	55.785	0.1534	55.785	55.658	55.811	0	0.033667	-0.00045112	NaN	57.471	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42665000			17218	1470	10529	10585							0.0446880117353885
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	468.764789	935.515025	0.29544	0.00013849	0.16184	7.5867E-05	0.45729	0.00021436	468.76465709639604	55.902	0.20596	55.717	55.587	55.793	-0.18565	-0.035197	0.00034054	NaN	57.471	9	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203310000			17219	1470	10529	10585							0.0446880117353885
KMHLFRKKWYP	11	Unmodified	_KMHLFRKKWYP_					0	0	0			REV__ENST00000476943.1_1_13:49956911-49975339:-|nuORF	REV__ENST00000476943.1_1_13:49956911-49975339:-|nuORF	MSMS	HCT116MG_D190212_S1	1	767.4305419921875	2	767.429199	1532.84384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.708	1	38.708	38.208	39.208	0								0	0	0	0.95636	1	14500	14500		2.9952	1.8019	1		+		17220	15921	10530	10586	16534	16534					0.09873630804099776
KMIEAIKES	9	Unmodified	_KMIEAIKES_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000556217.5_1_14:21837875-21852161:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	HCT116MG_D190212_S1	1	524.7892456054688	2	524.788992	1047.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.464	1	25.464	24.964	25.964	0								0	0	0	0.62371	1	9161	9161		22.775	2.194	1				17221	1578	10531	10587	16535	16535					0.04155250022790824
KMIEAIKES	9	Unmodified	_KMIEAIKES_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;SUPT16H|p.L305Cfs*9|1|0.16|ENSG00000092201|chr14:21368310-21368310|A/-|frameshift_variant;SUPT16H|p.S365Mfs*24|1|0.04|ENSG00000092201|chr14:21365096-21365097|-/A|frameshift_variant;SUPT16H|p.K393Sfs*29|2|0.2|ENSG00000092201|chr14:21364882-21364882|T/-|frameshift_variant;SUPT16H|p.Y764Cfs*2|1|0.36|ENSG00000092201|chr14:21359493-21359494|AT/-|frameshift_variant;ENST00000556217.5_1_14:21837875-21852161:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	HCT116MG_D190212_S2	2	524.7891235351562	2	524.788992	1047.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.879	1	25.51	25.01	26.01	-0.36914								0	0	0	0.029194	1	9339	9339		83.278	40.965	1				17222	1578	10531	10587	16536	16536					0.04155250022790824
KMIEDLQNEL	10	Unmodified	_KMIEDLQNEL_					0	0	0		SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant;ENSG00000198887|ENST00000361138|SMC5	SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	617.3150024414062	2	616.813196	1231.61184	0.38318	0.00023635	-0.12893	-7.9523E-05	0.25425	0.00015683	616.8130658757917	44.168	0.26701	44.168	44.036	44.304	0					11	4	3	0	0	0	0.013156	1	16716	16716		136.39	40.026	1	50794000			17223	6293	10532	10588	16537	16537					0.005296988720374429
KMIEDLQNEL	10	Unmodified	_KMIEDLQNEL_					0	0	0		SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant;ENSG00000198887|ENST00000361138|SMC5	SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	SMC5|p.F947Lfs*40|1|0.1|ENSG00000198887|chr9:70347984-70347984|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	617.3148803710938	2	616.813196	1231.61184	0.16294	0.0001005	0.13061	8.0563E-05	0.29355	0.00018106	616.8131597262712	44.193	0.31327	44.115	43.967	44.281	-0.078369					14	5	4	0	0	0	0.013156	1	16784	16784		136.39	29.452	1	122850000			17224	6293	10532	10588	16538	16538					0.005296988720374429
KMISMDIEQV	10	Unmodified	_KMISMDIEQV_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR;ENST00000504466.1_1_5:74645886-74647190:+|nuORF	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S2	2	597.8017578125	2	597.298867	1192.58318	0.67137	0.00040101	0.28074	0.00016769	0.95212	0.0005687	597.2989707612569	45.99	0.25676	45.889	45.71	45.966	-0.1014					8	4	2	0	0	0	0.036884	1	17512	17512		96.936	41.433	1	46398000			17225	2370	10533	10589	16539	16539					-0.005407420287838249
KMISMDIEQV	10	Unmodified	_KMISMDIEQV_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR;ENST00000504466.1_1_5:74645886-74647190:+|nuORF	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MATCH	HCT116MG_D190212_S1	1		2	597.298867	1192.58318	0.68051	0.00040647	0.17425	0.00010408	0.85476	0.00051055	597.2986980919594	45.949	0.1565	45.949	45.87	46.027	0	0.030023	-7.7125E-05	NaN	96.936	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6667200			17226	2370	10533	10589							-0.005407420287838249
KMKKILEVV	9	Unmodified	_KMKKILEVV_					0	0	0		ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	MSMS	HCT116MG_D190212_S4	4	363.2356262207031	3	363.235106	1086.68349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.648	1	46.277	45.777	46.777	-0.37134								0	0	0	0.7701	1	17228	17228		0.23584	0	1				17227	4047	10534	10590	16540	16540					0.14361283087191623
KMKLKKLKKK	10	Unmodified	_KMKLKKLKKK_					0	0	0		LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	636.9507446289062	2	636.949236	1271.88392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.499	1	35.356	34.856	35.856	-0.14245								0	0	0	0.97116	1	13244	13244		0	0	1				17228	9309	10535	10591	16541	16541					0.2588517747467449
KMKLVLVF	8	Unmodified	_KMKLVLVF_					0	0	0			REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	489.3151550292969	2	489.314449	976.614345	0.10025	4.9054E-05	-0.45469	-0.00022249	-0.35444	-0.00017343	489.314238857956	50.756	1.1855	50.756	50.266	51.451	0					62	22	6	0	0	0	0.86388	1	19253	19253		2.8892	2.8892	1	4062899999.9999995	+		17229	17637	10536	10592	16542	16542					0.1251024385829851
KMKLVLVF	8	Unmodified	_KMKLVLVF_					0	0	0			REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	489.314449	976.614345	0.10025	4.9054E-05	-0.45469	-0.00022249	-0.35444	-0.00017343	489.314238857956	50.756	1.1855	50.756	50.266	51.451	0	-0.087944	-0.00032666	NaN	2.8892	62	22	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4062899999.9999995	+		17230	17637	10536	10592							0.1251024385829851
KMKLVLVF	8	Unmodified	_KMKLVLVF_					0	0	0			REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	489.314449	976.614345	0.23692	0.00011593	-0.061535	-3.011E-05	0.17539	8.5821E-05	489.3143412065741	51.16	1.65	50.981	50.552	52.202	-0.17869	0.13765	5.8098E-05	NaN	2.8892	102	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1232800000	+		17231	17637	10536	10592							0.1251024385829851
KMKLVLVF	8	Unmodified	_KMKLVLVF_					0	0	0			REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	489.314449	976.614345	0.094136	4.6062E-05	-0.099165	-4.8523E-05	-0.0050295	-2.461E-06	489.3141753044458	51.105	0.41872	50.794	50.596	51.015	-0.31166	-0.049707	2.1272E-05	NaN	2.8892	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4076800	+		17232	17637	10536	10592							0.1251024385829851
KMKRKTRKS	9	Unmodified	_KMKRKTRKS_					0	0	0		ENST00000515770.1_3_6:18244815-18249976:-|nuORF;ENST00000505224.5_1_6:18237677-18249946:-|nuORF	ENST00000515770.1_3_6:18244815-18249976:-|nuORF	ENST00000515770.1_3_6:18244815-18249976:-|nuORF	MSMS	HCT116MG_D190212_S1	1	388.24420166015625	3	388.244887	1161.71283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.952	1	24.952	24.452	25.452	0								0	0	0	0.76948	1	8955	8955		2.7352	0	1				17233	8449	10537	10593	16543	16543					0.13844240156049636
KMKSMMPT	8	Unmodified	_KMKSMMPT_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MSMS	HCT116MG_D190212_S1	1	477.3169860839844	2	477.234484	952.454415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.202	1	58.202	57.702	58.702	0								0	0	0	0.8837	1	22413	22413		5.7604	0.52976	1				17234	1317	10538	10594	16544	16544					-0.02371375472694126
KMLAGNEFQV	10	Unmodified	_KMLAGNEFQV_					0	0	0		ENSG00000187608|ENST00000649529|ISG15	ENSG00000187608|ENST00000649529|ISG15	ENSG00000187608|ENST00000649529|ISG15	MULTI-SECPEP	HCT116MG_D190212_S1	1	568.8372192382812	2	568.792066	1135.56958	0.25777	0.00014662	-0.16849	-9.5835E-05	0.089282	5.0783E-05	568.7920452775141	42.977	0.15583	42.977	42.9	43.056	0					4	2	2	0	0	0	0.19558	1	16229	16229		66.457	22.598	1	3474100			17235	5949	10539	10595	16545	16545					0.007217682543114279
KMLEAENAL	9	Unmodified	_KMLEAENAL_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ARHGAP29|p.K371Sfs*12|1|0.32|ENSG00000137962|chr1:94202575-94202575|T/-|frameshift_variant;nc|ENSG00000137962|Q52LW3-2|ARHGAP29	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	509.765625	2	509.765517	1017.51648	0.20683	0.00010543	0.091471	4.6629E-05	0.2983	0.00015206	509.76564278195895	36.673	0.20857	36.673	36.522	36.731	0					6	3	2	0	0	0	0.077982	1	13692	13692		62.573	8.7399	1	5415100			17236	175	10540	10596	16546	16546					0.008423904716437391
KMLEKLPEL	9	Unmodified	_KMLEKLPEL_					0	0	0		ENST00000468892.5_1_3:183907488-183910505:+|nuORF;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	ENST00000468892.5_1_3:183907488-183910505:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	550.82275390625	2	550.822835	1099.63112	0.06745	3.7153E-05	0.40481	0.00022298	0.47226	0.00026013	550.822728111624	43.422	0.51549	43.349	42.943	43.458	-0.073376					16	9	2	0	0	0	0.12465	1	16492	16492		53.317	1.9015	1	10736000			17237	4483	10541	10597	16547	16547					0.08528699953581054
KMLETKWSL	9	Unmodified	_KMLETKWSL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MSMS	HCT116MG_D190212_S2	2	568.312255859375	2	568.312635	1134.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.193	1	44.115	43.615	44.615	-0.078373								0	0	0	8.692E-13	1	16778	16778		179.28	89.149	1			+	17238	558;541	10542	10598	16548	16548					0.048795292937711565
KMLNEMFVKFY	11	Unmodified	_KMLNEMFVKFY_					0	0	0			REV__CBL|p.R116K|1|0.59|ENSG00000110395|chr11:119232599-119232599|G/A|missense_variant	REV__CBL|p.R116K|1|0.59|ENSG00000110395|chr11:119232599-119232599|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	725.365234375	2	725.367084	1448.71961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.096	1	19.721	19.221	20.221	-0.37503								0	0	0	0.95113	1	7006	7006		5.7319	0	1		+		17239	10100	10543	10599	16549	16549					0.013203722017578912
KMLRKGKIKV	10	Unmodified	_KMLRKGKIKV_					0	0	0		tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	tr|U7SW10|U7SW10_FUSNU23SrRNApseudouridine955/2504/2580synthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01414PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	400.9383239746094	3	400.937282	1199.79002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.199	1	10.917	10.417	11.417	-0.28186								0	0	0	0.97054	1	3595	3595		0.13989	0.056541	1				17240	18498	10544	10600	16550	16550					0.19811458372373636
KMLVELSKA	9	Unmodified	_KMLVELSKA_					0	0	0		nc|ENSG00000115484|P50991-2|CCT4	nc|ENSG00000115484|P50991-2|CCT4	nc|ENSG00000115484|P50991-2|CCT4	MSMS	HCT116MG_D190212_S3	3	509.80377197265625	2	509.801903	1017.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.256	1	44.946	44.446	45.446	-0.30927								0	0	0	0.76739	1	16939	16939		10.074	3.3508	1				17241	9433	10545	10601	16551	16551					0.08116144265068215
KMLYLLKHT	9	Unmodified	_KMLYLLKHT_					0	0	0		ENST00000370440.5_1_1:91403335-91403398:-|nuORF	ENST00000370440.5_1_1:91403335-91403398:-|nuORF	ENST00000370440.5_1_1:91403335-91403398:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	574.3036499023438	2	573.83882	1145.66309	0.35081	0.00020131	1.3841	0.00079423	1.7349	0.00099554	574.3420749575369	36.92	0.361	36.806	36.602	36.963	-0.11478					10	6	2	0	0	0	0.1898	1	13857	13857		38.176	11.292	1	10207000			17242	7425	10546	10602	16552	16552					0.09608112427417836
KMMDVTVTI	9	Unmodified	_KMMDVTVTI_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	HCT116MG_D190212_S1	1	519.280029296875	2	519.272121	1036.52969	0.44798	0.00023262	-0.2884	-0.00014976	0.15958	8.2865E-05	519.2719424337653	47.036	0.31062	47.036	46.855	47.165	0					11	5	3	0	0	0	0.090581	1	17844	17844		60.074	16.216	1	33118000			17243	1882;1899	10547	10603	16553	16553					0.012885052593901491
KMNESTRSV	9	Unmodified	_KMNESTRSV_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	526.2803344726562	2	526.263673	1050.51279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.239	1	17.239	16.739	17.739	0								0	0	0	0.60272	1	5854	5854		23.79	5.6548	1				17244	1949	10548	10604	16554	16554					-0.01044279302209361
KMNGKVWDL	9	Unmodified	_KMNGKVWDL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000569005.5_1_16:28743506-28746001:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7894287109375	2	545.789327	1089.5641	0.61198	0.00033401	-0.24071	-0.00013138	0.37126	0.00020263	545.788635901933	41.768	0.31017	41.7	41.498	41.808	-0.068199					11	5	3	0	0	0	0.16285	1	15797	15797		45.74	9.6129	1	17578000			17245	5757	10549	10605	16555	16555					0.022900894624854118
KMPDDVWLV	9	Unmodified	_KMPDDVWLV_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MULTI-MSMS	HCT116MG_D190212_S1	1	551.78369140625	2	551.78371	1101.55287	0.5691	0.00031402	0.094193	5.1974E-05	0.6633	0.000366	551.7836015975151	55.332	0.2549	55.332	55.197	55.452	0					8	4	3	0	0	0	0.49039	1	21266	21266		24.021	7.0783	1	33954000			17246	2251	10550	10606	16556	16556					0.006152673683345711
KMPDDVWLV	9	Unmodified	_KMPDDVWLV_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MULTI-MSMS	HCT116MG_D190212_S2	2	551.7837524414062	2	551.78371	1101.55287	0.40059	0.00022104	0.14215	7.8437E-05	0.54274	0.00029948	551.7837150533181	55.539	0.31025	55.354	55.225	55.535	-0.18565					15	5	4	0	0	0	0.10482	1	21418	21418		62.573	26.107	1	126650000			17247	2251	10550	10606	16557	16557					0.006152673683345711
KMQEHSDQV	9	Unmodified	_KMQEHSDQV_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.S549Pfs*8|1|0.36|ENSG00000166508|chr7:100095422-100095422|G/-|frameshift_variant;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	HCT116MG_D190212_S1	1	551.2533569335938	2	551.253305	1100.49206	0.50214	0.00027681	-0.21608	-0.00011911	0.28607	0.0001577	551.2531146875626	16.603	0.20821	16.603	16.473	16.681	0					8	3	3	0	0	0	0.054316	1	5620	5620		78.06	47.424	1	8466200			17248	4862	10551	10607	16558	16558					-0.054168696818805984
KMQEHSDQV	9	Unmodified	_KMQEHSDQV_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.S549Pfs*8|1|0.36|ENSG00000166508|chr7:100095422-100095422|G/-|frameshift_variant;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-2|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	HCT116MG_D190212_S2	2	551.2532348632812	2	551.253305	1100.49206	0.39754	0.00021914	-0.2224	-0.0001226	0.17514	9.6546E-05	551.2530915471491	17.143	0.26052	16.794	16.665	16.925	-0.34933					13	4	4	0	0	0	0.0040425	1	5818	5818		162.31	114.57	1	34013000			17249	4862	10551	10607	16559	16559					-0.054168696818805984
KMQETLVGL	9	Unmodified	_KMQETLVGL_					0	0	0		ENST00000469871.1_1_7:2249647-2255919:-|nuORF;nc|ENSG00000002822|Q9Y6D9-3|MAD1L1;nc|ENSG00000002822|Q9Y6D9-4|MAD1L1;ENSG00000002822|ENST00000265854|MAD1L1	ENST00000469871.1_1_7:2249647-2255919:-|nuORF	ENST00000469871.1_1_7:2249647-2255919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	509.78411865234375	2	509.78371	1017.55287	0.4036	0.00020575	-0.11418	-5.8205E-05	0.28942	0.00014754	509.78357245836634	45.201	0.31244	45.109	44.943	45.256	-0.092472					10	5	3	0	0	0	0.027442	1	17196	17196		88.954	26.381	1	23342000			17250	791	10552	10608	16560	16560					0.044792673683673456
KMQQALVQL	9	Unmodified	_KMQQALVQL_					0	0	0		nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant;ENSG00000126016|ENST00000371959|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	MULTI-MSMS	HCT116MG_D190212_S1	1	529.8054809570312	2	529.804977	1057.5954	0.41952	0.00022226	-0.67825	-0.00035934	-0.25873	-0.00013708	529.8050093196855	35.996	0.36509	35.996	35.785	36.15	0					14	6	3	0	0	0	0.59184	1	13419	13419		11.64	0.81637	1	13914000			17251	124	10553	10609	16561	16561					0.0689066249658481
KMQQALVQL	9	Unmodified	_KMQQALVQL_					0	0	0		nc|ENSG00000126016|Q4VCS5-2|AMOT;AMOT|p.L850Cfs*59|1|0.13|ENSG00000126016|chrX:112779606-112779606|G/-|frameshift_variant;ENSG00000126016|ENST00000371959|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	MULTI-MSMS	HCT116MG_D190212_S3	3	529.8049926757812	2	529.804977	1057.5954	0.10719	5.6789E-05	-0.10694	-5.6656E-05	0.00025136	1.3317E-07	529.8048327163565	36.264	0.31194	35.964	35.781	36.093	-0.30042					13	5	3	0	0	0	0.59184	1	13395	13395		11.64	11.64	1	14686000			17252	124	10553	10609	16562	16562					0.0689066249658481
KMRGPGGF	8	Unmodified	_KMRGPGGF_					0	0	0			REV__ENSG00000089094|ENST00000377071|KDM2B;REV__KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant	REV__ENSG00000089094|ENST00000377071|KDM2B	MSMS	HCT116MG_D190212_S2	2	425.2217712402344	2	425.223623	848.432692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.16	1	29.876	29.376	30.376	-0.28453								0	0	0	0.8837	1	11077	11077		5.7604	0.52976	1		+		17253	10967;16921	10554	10610	16563	16563					0.002413238852568611
KMRKVLKH	8	Unmodified	_KMRKVLKH_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MSMS	HCT116MG_D190212_S4	4	520.3327026367188	2	520.331496	1038.64844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.707	1	62.458	61.958	62.958	-0.24919								0	0	0	0.8837	1	23678	23678		0	0	1				17254	1077	10555	10611	16564	16564					0.13066085069931432
KMSEKILLL	9	Unmodified	_KMSEKILLL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S1	1	538.3350219726562	2	537.833203	1073.65185	0.25228	0.00013568	0.17937	9.6469E-05	0.43164	0.00023215	537.8332609568399	48.16	0.25805	48.16	47.996	48.254	0					8	4	2	0	0	0	0.0093047	1	18312	18312		136.39	36.593	1	37940000			17255	2925	10556	10612	16565	16565					0.11797290333265664
KMSEKILLL	9	Unmodified	_KMSEKILLL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	537.8338623046875	2	537.833203	1073.65185	0.71504	0.00038457	0.18388	9.8899E-05	0.89892	0.00048347	537.83338363315	48.202	0.2531	48.069	47.943	48.196	-0.13281					7	4	2	0	0	0	0.15109	1	18430	18430		51.415	7.6428	1	101080000			17256	2925	10556	10612	16566	16566					0.11797290333265664
KMSIFIIAL	9	Unmodified	_KMSIFIIAL_					0	0	0		tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	518.3175659179688	2	518.317189	1034.61982	0.46589	0.00024148	-0.13409	-6.9502E-05	0.33179	0.00017197	518.3170024299927	46.695	2.3672	46.584	45.597	47.964	-0.11122					121	45	4	0	0	0	0.69329	1	18264	18264		5.7319	5.7319	1	159940000			17257	18495	10557	10613	16567	16567					0.10389922650097105
KMSIFIIAL	9	Unmodified	_KMSIFIIAL_					0	0	0		tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	tr|U7SVT1|U7SVT1_FUSNUHD/PDEasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01329PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	518.317189	1034.61982	0.46589	0.00024148	-0.13409	-6.9502E-05	0.33179	0.00017197	518.3170024299927	46.695	2.3672	46.584	45.597	47.964	-0.11122	0.1154	-1.2191E-05	NaN	5.7319	121	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159940000			17258	18495	10557	10613							0.10389922650097105
KMSQVAPSL	9	Unmodified	_KMSQVAPSL_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	HCT116MG_D190212_S2	2	480.762939453125	2	480.762778	959.511002	0.33627	0.00016167	-0.37117	-0.00017845	-0.034903	-1.678E-05	480.7625755454183	34.842	0.31105	34.683	34.554	34.865	-0.15834					7	5	2	0	0	0	0.28073	1	13012	13012		32.786	0.66872	1	13898000			17259	1782	10558	10614	16568	16568					0.02962711679822405
KMTEEQHSL	9	Unmodified	_KMTEEQHSL_					0	0	0		ENSG00000096872|ENST00000380062|IFT74	ENSG00000096872|ENST00000380062|IFT74	ENSG00000096872|ENST00000380062|IFT74	MULTI-MSMS	HCT116MG_D190212_S1	1	551.7638549804688	2	551.763506	1101.51246	0.56095	0.00030951	0.37657	0.00020778	0.93752	0.00051729	551.7633528764504	21.233	0.31822	21.233	21.067	21.385	0					11	5	3	0	0	0	0.0096585	1	7460	7460		114.19	59.413	1	7238800			17260	1623	10559	10615	16569	16569					-0.034236990220506414
KMTEEQHSL	9	Unmodified	_KMTEEQHSL_					0	0	0		ENSG00000096872|ENST00000380062|IFT74	ENSG00000096872|ENST00000380062|IFT74	ENSG00000096872|ENST00000380062|IFT74	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	551.763506	1101.51246	0.24566	0.00013555	0.51824	0.00028594	0.76389	0.00042149	551.7638948129398	21.838	0.26048	21.453	21.323	21.583	-0.38503	0.10975	8.6707E-05	NaN	114.19	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23278000			17261	1623	10559	10615							-0.034236990220506414
KMVGDVTGA	9	Unmodified	_KMVGDVTGA_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	HCT116MG_D190212_S2	2	439.2261047363281	2	439.226028	876.437503	0.34241	0.00015039	-0.25656	-0.00011269	0.085845	3.7705E-05	439.2258987945502	26.153	0.25925	25.792	25.662	25.921	-0.36164					7	4	2	0	0	0	0.13316	1	9459	9459		51.63	9.5352	1	16992000			17262	3742	10560	10616	16570	16570					-0.005658367626438121
KMVGDVTGAQA	11	Unmodified	_KMVGDVTGAQA_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MSMS	HCT116MG_D190212_S1	1	538.7742309570312	2	538.773874	1075.53319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.669	1	25.669	25.169	26.169	0								0	0	0	0.78956	1	9243	9243		34.222	9.2307	1				17263	3742	10561	10617	16571	16571					-0.001551086423887682
KMVGDVTGAQA	11	Unmodified	_KMVGDVTGAQA_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.7742309570312	2	538.773874	1075.53319	0.67549	0.00036394	-0.38826	-0.00020918	0.28723	0.00015475	538.7734460419239	25.991	0.36386	25.622	25.446	25.81	-0.36914					12	6	3	0	0	0	0.35472	1	9408	9408		59.052	24.12	1	21621000			17264	3742	10561	10617	16572	16572					-0.001551086423887682
KMVTKQKG	8	Unmodified	_KMVTKQKG_					0	0	0		tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	460.2752685546875	2	460.273312	918.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.844	1	36.844	36.344	37.344	0								0	0	0	0.8837	1	13747	13747		4.3292	1.7518	1				17265	18621	10562	10618	16573	16573					0.06954721779356987
KMWDPHNDPNA	11	Unmodified	_KMWDPHNDPNA_					0	0	0		nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70;SNRNP70|p.D100Mfs*11|1|0.34|ENSG00000104852|chr19:49098455-49098455|G/-|frameshift_variant;nc|ENSG00000104852|P08621-3|SNRNP70	nc|ENSG00000104852|P08621-2|SNRNP70	nc|ENSG00000104852|P08621-2|SNRNP70	MULTI-MSMS	HCT116MG_D190212_S1	1	662.7911376953125	2	662.790586	1323.56662	0.6978	0.00046249	0.54473	0.00036104	1.2425	0.00082353	662.7907968340945	27.133	0.26003	27.133	26.97	27.23	0					8	4	2	0	0	0	0.079728	1	9850	9850		107.51	88.152	1	6836500			17266	1957	10563	10619	16574	16574					-0.08222106870493917
KMWDPHNDPNA	11	Unmodified	_KMWDPHNDPNA_					0	0	0		nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70;SNRNP70|p.D100Mfs*11|1|0.34|ENSG00000104852|chr19:49098455-49098455|G/-|frameshift_variant;nc|ENSG00000104852|P08621-3|SNRNP70	nc|ENSG00000104852|P08621-2|SNRNP70	nc|ENSG00000104852|P08621-2|SNRNP70	MULTI-MSMS	HCT116MG_D190212_S2	2	663.292724609375	2	662.790586	1323.56662	0.63313	0.00041963	0.1259	8.3446E-05	0.75903	0.00050308	662.7905184393705	27.551	0.51784	27.209	26.829	27.347	-0.34201					18	9	3	0	0	0	2.4711E-15	1	10003	10003		245.55	217.05	1	45016000			17267	1957	10563	10619	16575	16575					-0.08222106870493917
KMWDPHNDPNA	11	Unmodified	_KMWDPHNDPNA_					0	0	0		nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70;SNRNP70|p.D100Mfs*11|1|0.34|ENSG00000104852|chr19:49098455-49098455|G/-|frameshift_variant;nc|ENSG00000104852|P08621-3|SNRNP70	nc|ENSG00000104852|P08621-2|SNRNP70	nc|ENSG00000104852|P08621-2|SNRNP70	MULTI-MSMS	HCT116MG_D190212_S2	2	442.1962890625	3	442.19615	1323.56662	0.32969	0.00014579	-0.53819	-0.00023799	-0.2085	-9.2199E-05	442.19590422432856	27.559	0.25843	27.217	27.037	27.295	-0.34201					7	4	2	0	0	0	0.57546	1	10023	10023		38.161	31.969	1	14785000			17268	1957	10563	10619	16576	16576					-0.08222106870493917
KMWEEAIAL	9	Unmodified	_KMWEEAIAL_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7841796875	2	545.78371	1089.55287	0.47911	0.00026149	0.087174	4.7578E-05	0.56629	0.00030907	545.7839203703927	52.819	0.25659	52.63	52.501	52.758	-0.18922					7	4	2	0	0	0	0.29516	1	20313	20313		31.268	7.2478	1	15401000			17269	4091	10564	10620	16577	16577					0.011672673683506218
KMYEEFLSKV	10	Oxidation (M)	_KM(Oxidation (M))YEEFLSKV_		KM(1)YEEFLSKV		KM(140)YEEFLSKV	0	0	1		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S1	1	645.32666015625	2	645.325939	1288.63732	0.44976	0.00029024	-0.60776	-0.0003922	-0.158	-0.00010196	645.3255100410917	40.317	0.31072	40.317	40.228	40.539	0					12	5	3	0	0	0	0.013374	1	15171	15171		135.87	100.94	1	17546000			17270	2190	10565	10621	16578	16578		43			0.004551733944254011
KMYEEFLSKV	10	Oxidation (M)	_KM(Oxidation (M))YEEFLSKV_		KM(1)YEEFLSKV		KM(46)YEEFLSKV	0	0	1		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S2	2	645.3260498046875	2	645.325939	1288.63732	0.77506	0.00050017	-0.15254	-9.8438E-05	0.62252	0.00040173	645.3260656915858	40.439	0.36294	40.369	40.105	40.468	-0.069626					11	6	2	0	0	0	0.3449	1	15211	15211		46.475	25.894	1	15303000			17271	2190	10565	10621	16579	16579		43			0.004551733944254011
KMYEEFLSKV	10	Unmodified	_KMYEEFLSKV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S1	1	637.3281860351562	2	637.328482	1272.64241	0.65717	0.00041883	-0.33606	-0.00021418	0.32111	0.00020465	637.3282302575454	44.957	0.31018	44.957	44.777	45.087	0					14	5	4	0	0	0	1.6024E-06	1	17024	17024		205.73	140.26	1	155440000			17272	2190	10565	10622	16580	16580					0.01699477257034232
KMYEEFLSKV	10	Unmodified	_KMYEEFLSKV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MSMS	HCT116MG_D190212_S1	1	425.2213134765625	3	425.221413	1272.64241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.037	1	45.037	44.537	45.537	0								0	0	0	0.82154	1	17054	17054		18.34	13.447	1				17273	2190	10565	10622	16581	16581					0.01699477257034232
KMYEEFLSKV	10	Unmodified	_KMYEEFLSKV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S2	2	637.3289794921875	2	637.328482	1272.64241	0.62567	0.00039876	0.011913	7.5925E-06	0.63759	0.00040635	637.3284302411081	45.008	0.41797	44.915	44.735	45.153	-0.092472					21	7	5	0	0	0	4.0215E-17	1	17095	17095		248.96	174.76	1	301470000			17274	2190	10565	10622	16582	16582					0.01699477257034232
KMYEEFLSKV	10	Unmodified	_KMYEEFLSKV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S2	2	425.2214050292969	3	425.221413	1272.64241	0.23149	9.8436E-05	-0.20219	-8.5976E-05	0.029304	1.2461E-05	425.2212906562016	44.983	0.31371	44.891	44.735	45.049	-0.092472					11	5	3	0	0	0	0.049927	1	17112	17112		68.484	49.34	1	18574000			17275	2190	10565	10622	16583	16583					0.01699477257034232
KMYEEFLSKV	10	Unmodified	_KMYEEFLSKV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MATCH	HCT116MG_D190212_S1	1		3	425.221413	1272.64241	-0.039524	-1.6807E-05	-0.45679	-0.00019424	-0.49631	-0.00021104	425.22129296652423	44.957	0.20567	44.957	44.829	45.034	0	0.033133	-9.1623E-05	NaN	68.484	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15225000			17276	2190	10565	10622							0.01699477257034232
KNALAAPE	8	Unmodified	_KNALAAPE_					0	0	0			REV__ENST00000330964.9_1_15:63449741-63449897:-|nuORF	REV__ENST00000330964.9_1_15:63449741-63449897:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	407.2268981933594	2	407.226885	812.439217	0.16376	6.6687E-05	-0.048676	-1.9822E-05	0.11508	4.6865E-05	407.2268137936519	27.694	0.25009	27.372	27.252	27.502	-0.32157					6	4	2	0	0	0	0.71077	1	9927	9927		21.747	2.3076	1	4717000	+		17277	14928	10566	10623	16584	16584					0.025495403176137188
KNECKRLFSAK	11	Unmodified	_KNECKRLFSAK_					0	0	0			REV__tr|U7T1H2|U7T1H2_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00643PE=4SV=1	REV__tr|U7T1H2|U7T1H2_FUSNUDUF3592domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00643PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	662.4371948242188	2	662.363721	1322.71289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.599	1	16.599	16.099	17.099	0								0	0	0	0.94145	1	5597	5597		10.8	4.5937	1		+		17278	17903	10567	10624	16585	16585					0.06444195365361338
KNEILKRNL	9	Unmodified	_KNEILKRNL_					0	0	0		nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA	nc|ENSG00000137831|Q9BZF9-2|UACA	nc|ENSG00000137831|Q9BZF9-2|UACA	MULTI-SECPEP	HCT116MG_D190212_S1	1	564.8109741210938	2	564.348397	1126.68224	0.30235	0.00017063	-2.4119	-0.0013612	-2.1096	-0.0011905	564.3472106573129	49.569	0.20647	49.569	49.44	49.647	0					5	3	2	0	0	0	0.21838	1	18866	18866		14.838	0	1	17279000			17279	3509	10568	10625	16586	16586					0.12396785042665215
KNEKKRKRRRK	11	Unmodified	_KNEKKRKRRRK_					0	0	0			REV__BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant	REV__BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	763.9949951171875	2	763.994949	1525.97534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.196	1	61.048	60.548	61.548	-0.14852								0	0	0	0.96149	1	23699	23699		0.30703	0.30703	1		+		17280	10056	10569	10626	16587	16587					0.23339577216165708
KNETVIEKP	9	Unmodified	_KNETVIEKP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S2	2	353.2011413574219	3	353.201118	1056.58152	-0.082961	-2.9302E-05	0.050194	1.7729E-05	-0.032767	-1.1573E-05	353.20113685665086	25.329	0.46883	24.954	24.608	25.076	-0.37521					17	8	3	0	0	0	0.2853	1	9141	9141		23.79	2.1996	1	12441000			17281	4258;9506	10570	10627	16588	16588					0.0554970826913177
KNHLHQVL	8	Unmodified	_KNHLHQVL_					0	0	0		ENSG00000166578|ENST00000416617|IQCD	ENSG00000166578|ENST00000416617|IQCD	ENSG00000166578|ENST00000416617|IQCD	MULTI-SECPEP	HCT116MG_D190212_S2	2	495.2306823730469	2	494.787976	987.561398	0.27657	0.00013684	-0.032367	-1.6015E-05	0.24421	0.00012083	494.7878665814762	23	0.20791	22.615	22.466	22.674	-0.3852					5	3	2	0	0	0	0.17245	1	8194	8194		48.346	12.302	1	5925400			17282	4867	10571	10628	16589	16589					0.0671200211983205
KNIQWYFWWD	10	Unmodified	_KNIQWYFWWD_					0	0	0		tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	tr|U7SKK3|U7SKK3_FUSNUDUF4253domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02059PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	495.9845275878906	3	495.903183	1484.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.61	1	49.294	48.794	49.794	-0.31596								0	0	0	0.96836	1	18686	18686		0.62683	0.12087	1				17283	18325	10572	10629	16590	16590					-0.035235361655395536
KNITPAILTC	10	Unmodified	_KNITPAILTC_					0	0	0		ENST00000295754.9_1_3:30691883-30713159:+|nuORF	ENST00000295754.9_1_3:30691883-30713159:+|nuORF	ENST00000295754.9_1_3:30691883-30713159:+|nuORF	MSMS	HCT116MG_D190212_S1	1	537.3035278320312	2	537.30481	1072.59507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.414	1	23.414	22.914	23.914	0								0	0	0	0.92607	1	8337	8337		10.074	0	1				17284	6976	10573	10630	16591	16591					0.061672427767234694
KNLILCLY	8	Unmodified	_KNLILCLY_					0	0	0		ENST00000584437.5_1_17:56494125-56494206:-|nuORF	ENST00000584437.5_1_17:56494125-56494206:-|nuORF	ENST00000584437.5_1_17:56494125-56494206:-|nuORF	MSMS	HCT116MG_D190212_S1	1	490.28607177734375	2	490.285889	978.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.488	1	37.488	36.988	37.988	0								0	0	0	0.8837	1	14007	14007		9.3474	0	1				17285	8975	10574	10631	16592	16592					0.06708776581911025
KNLKLTIIIII	11	Unmodified	_KNLKLTIIIII_					0	0	0		nc|ENSG00000292366|P51809-3|VAMP7;ENSG00000124333|ENST00000286448|VAMP7	nc|ENSG00000292366|P51809-3|VAMP7	nc|ENSG00000292366|P51809-3|VAMP7	MSMS	HCT116MG_D190212_S2	2	641.44873046875	2	641.447049	1280.87954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.777	1	48.633	48.133	49.133	-0.1437								0	0	0	0.9598	1	18646	18646		1.1933	0.12188	1				17286	2842	10575	10632	16593	16593					0.2503399153274586
KNLRVVTGP	9	Unmodified	_KNLRVVTGP_					0	0	0			REV__ENSG00000078898|ENST00000170150|BPIFB2	REV__ENSG00000078898|ENST00000170150|BPIFB2	MSMS	HCT116MG_D190212_S4	4	492.24456787109375	2	492.303458	982.592364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.675	1	31.305	30.805	31.805	-0.37026								0	0	0	0.7689	1	11506	11506		4.756	0	1		+		17287	10844	10576	10633	16594	16594					0.10037155434088163
KNNRRKSFIA	10	Unmodified	_KNNRRKSFIA_					0	0	0		ENST00000486151.5_1_10:49386068-49414901:-|nuORF;nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	ENST00000486151.5_1_10:49386068-49414901:-|nuORF	ENST00000486151.5_1_10:49386068-49414901:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	617.3619384765625	2	617.36237	1232.71019	0.64831	0.00040024	-0.53379	-0.00032954	0.11452	7.07E-05	617.3616708518236	53.269	0.30825	53.269	53.05	53.359	0					11	5	3	0	0	0	0.88076	1	20411	20411		3.2813	0.54611	1	19033000			17288	5123	10577	10634	16595	16595					0.10314108022771507
KNNRRKSFIA	10	Unmodified	_KNNRRKSFIA_					0	0	0		ENST00000486151.5_1_10:49386068-49414901:-|nuORF;nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	ENST00000486151.5_1_10:49386068-49414901:-|nuORF	ENST00000486151.5_1_10:49386068-49414901:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	617.36237	1232.71019	0.64831	0.00040024	-0.53379	-0.00032954	0.11452	7.07E-05	617.3616708518236	53.269	0.30825	53.269	53.05	53.359	0	0	0	NaN	3.2813	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19033000			17289	5123	10577	10634							0.10314108022771507
KNNTLKTMEE	10	Unmodified	_KNNTLKTMEE_					0	0	0			REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	REV__SYCP1|p.D793Tfs*65|1|0.36|ENSG00000198765|chr1:114977603-114977603|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	604.3018798828125	2	604.302995	1206.59144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.232	1	31.857	31.357	32.357	-0.37529								0	0	0	0.89062	1	11731	11731		17.113	0.96379	1		+		17290	14149	10578	10635	16596	16596					-0.0035947178776041255
KNPQSIKVF	9	Unmodified	_KNPQSIKVF_					0	0	0			REV__ENSG00000162728|ENST00000368088|KCNJ9	REV__ENSG00000162728|ENST00000368088|KCNJ9	MULTI-MSMS	HCT116MG_D190212_S2	2	530.8095092773438	2	530.811116	1059.60768	0.38073	0.0002021	-3.0888	-0.0016396	-2.7081	-0.0014375	530.8094549109346	23.189	0.25977	22.804	22.726	22.986	-0.3852					6	4	2	0	0	0	0.60612	1	8290	8290		10.824	0	1	6966100	+		17291	12892	10579	10636	16597	16597					0.0802602223127451
KNQAKLIEF	9	Unmodified	_KNQAKLIEF_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	HCT116MG_D190212_S3	3	545.8163452148438	2	545.816399	1089.61824	0.39102	0.00021342	-0.13298	-7.2584E-05	0.25804	0.00014084	545.8164288981483	50.8	0.26034	50.487	50.333	50.594	-0.31381					9	4	3	0	0	0	0.1754	1	19179	19179		43.858	0.085901	1	10106000			17292	3384	10580	10637	16598	16598					0.07702004885709357
KNQENVSHL	9	Unmodified	_KNQENVSHL_					0	0	0		MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	356.8537292480469	3	356.8526	1067.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.816	1	38.816	38.316	39.316	0								0	0	0	0.76781	1	14544	14544		5.2969	0.39987	1				17293	1366	10581	10638	16599	16599					0.004904828067765266
KNQEYIAKQFG	11	Unmodified	_KNQEYIAKQFG_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	HCT116MG_D190212_S2	2	663.8950805664062	2	663.346052	1324.67755	0.42018	0.00027872	0.39916	0.00026478	0.81934	0.0005435	663.3466167545529	51.198	0.25935	51.019	50.81	51.069	-0.17869					6	4	2	0	0	0	0.36447	1	19570	19570		7.609	0.88579	1	9566900			17294	4098	10582	10639	16600	16600					0.02819856109204011
KNRALIKP	8	Unmodified	_KNRALIKP_					0	0	0			REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	470.30853271484375	2	470.308544	938.602535	0.16131	7.5864E-05	0.55872	0.00026277	0.72003	0.00033864	470.3086702223416	58.387	0.44253	58.387	58.173	58.615	0					14	8	3	0	0	0	0.85329	1	22521	22521		4.756	2.1785	1	50457000	+		17295	17571	10583	10640	16601	16601					0.13077763159310507
KNRHPLKPAQT	11	Unmodified	_KNRHPLKPAQT_					0	0	0		ENST00000597384.1_1_19:7571970-7578873:+|nuORF	ENST00000597384.1_1_19:7571970-7578873:+|nuORF	ENST00000597384.1_1_19:7571970-7578873:+|nuORF	MSMS	HCT116MG_D190212_S3	3	645.3755493164062	2	645.375478	1288.7364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.147	1	57.878	57.378	58.378	-0.26932								0	0	0	0.89672	1	22113	22113		20.415	1.0526	1				17296	9072	10584	10641	16602	16602					0.10358377194211243
KNRITRDQ	8	Unmodified	_KNRITRDQ_					0	0	0		ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	MSMS	HCT116MG_D190212_S4	4	515.7926025390625	2	515.791247	1029.56794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.857	1	38.476	37.976	38.976	-0.38163								0	0	0	0.69969	1	14256	14256		30.637	8.8899	1				17297	5609	10585	10642	16603	16603					0.05433895280543766
KNRRAKWRHQK	11	Unmodified	_KNRRAKWRHQK_					0	0	0		ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	MSMS	HCT116MG_D190212_S1	1	754.4428100585938	2	754.445092	1506.87563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.605	1	38.605	38.105	39.105	0								0	0	0	0.9598	1	14458	14458		1.1933	0.79263	1				17298	1133	10586	10643	16604	16604					0.1424675960224704
KNRRKLFFILL	11	Unmodified	_KNRRKLFFILL_					0	0	0			REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	MSMS	HCT116MG_D190212_S2	2	724.637939453125	2	724.466638	1446.91872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.101	1	53.912	53.412	54.412	-0.1894								0	0	0	0.95954	1	20821	20821		1.3295	0.13619	1		+		17299	10856	10587	10644	16605	16605					0.21314136606997636
KNSEPQDPPN	10	Unmodified	_KNSEPQDPPN_					0	0	0		ENSG00000179300|ENST00000321110|RTL3	ENSG00000179300|ENST00000321110|RTL3	ENSG00000179300|ENST00000321110|RTL3	MULTI-MSMS	HCT116MG_D190212_S4	4	563.2619018554688	2	563.262185	1124.50982	0.1532	8.6291E-05	0.065183	3.6715E-05	0.21838	0.00012301	563.262051303179	18.39	1.1929	18.209	17.371	18.563	-0.18052					37	22	2	0	0	0	0.64492	1	6065	6065		24.991	1.2012	1	4037000			17300	5547	10588	10645	16606	16606					-0.04745831155378255
KNTKTSIKYKQ	11	Unmodified	_KNTKTSIKYKQ_					0	0	0			REV__RPAP2|p.K133Sfs*38|1|0.37|ENSG00000122484|chr1:92304346-92304346|A/-|frameshift_variant	REV__RPAP2|p.K133Sfs*38|1|0.37|ENSG00000122484|chr1:92304346-92304346|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	447.0993957519531	3	446.92951	1337.7667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6549	1	2.6549	2.1549	3.1549	0								0	0	0	0.9619	1	794	794		0.094841	0	1		+		17301	11739	10589	10646	16607	16607					0.1113269106874668
KNVNPGKR	8	Unmodified	_KNVNPGKR_					0	0	0		ENST00000515622.1_1_5:126783361-126801299:+|nuORF;ENSG00000145794|ENST00000503335|MEGF10	ENST00000515622.1_1_5:126783361-126801299:+|nuORF	ENST00000515622.1_1_5:126783361-126801299:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	456.77227783203125	2	456.772326	911.530098	-0.067693	-3.092E-05	-0.22356	-0.00010212	-0.29126	-0.00013304	456.77226754293866	51.026	0.56777	51.026	50.73	51.297	0					15	10	2	0	0	0	0.8672	1	19508	19508		2.3027	0	1	10107000			17302	3923	10590	10647	16608	16608					0.07079429085752054
KNVTRRAG	8	Unmodified	_KNVTRRAG_					0	0	0		tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1	tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1	tr|U7SRD4|U7SRD4_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01559PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	451.2702941894531	2	451.26995	900.525347	0.12442	5.6146E-05	0.050171	2.2641E-05	0.17459	7.8787E-05	451.2699288521069	45.467	0.46889	45.467	45.244	45.713	0					15	8	2	0	0	0	0.83605	1	17247	17247		7.2892	0.56607	1	7057400			17303	18399	10591	10648	16609	16609					0.07110544942986508
KNWESVELP	9	Unmodified	_KNWESVELP_					0	0	0			REV__ENSG00000091656|ENST00000651372|ZFHX4	REV__ENSG00000091656|ENST00000651372|ZFHX4	MSMS	HCT116MG_D190212_S3	3	551.2810668945312	2	551.282389	1100.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.709	1	22.69	22.19	23.19	-0.018869								0	0	0	0.30227	1	7981	7981		39.957	0.0076237	1		+		17304	11003	10592	10649	16610	16610					0.003971352350617963
KNYFKVHKKP	10	Unmodified	_KNYFKVHKKP_					0	0	0		L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|41|2|sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|41|2|sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|41|2|sense	MSMS	HCT116MG_D190212_S2	2	645.2991943359375	2	644.879865	1287.74518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.712	1	25.343	24.843	25.843	-0.36914								0	0	0	0.94107	1	9271	9271		6.7232	0.99131	1				17305	9284	10593	10650	16611	16611					0.11281350830677184
KPAALVRIIKY	11	Unmodified	_KPAALVRIIKY_					0	0	0			REV__ENST00000425263.5_1_2:44586875-44586968:-|nuORF	REV__ENST00000425263.5_1_2:44586875-44586968:-|nuORF	MSMS	HCT116MG_D190212_S2	2	636.4168090820312	2	636.41354	1270.81253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.556	1	49.392	48.892	49.892	-0.16369								0	0	0	0.95196	1	18970	18970		5.2969	1.7004	1		+		17306	15545	10594	10651	16612	16612					0.1879538104162748
KPAHKWIRH	9	Unmodified	_KPAHKWIRH_					0	0	0		CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant;CYLC1|p.N291Efs*7|1|0.24|ENSG00000183035|chrX:83873571-83873572|-/A|frameshift_variant;CYLC1|p.D425Gfs*2|1|0.26|ENSG00000183035|chrX:83873972-83873973|-/A|frameshift_variant;CYLC1|p.K424Rfs*69|2|0.17|ENSG00000183035|chrX:83873973-83873973|A/-|frameshift_variant;ENSG00000183035|ENST00000329312|CYLC1	CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant	CYLC1|p.N205Ffs*7|1|0.15|ENSG00000183035|chrX:83873321-83873322|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	586.8447875976562	2	586.843616	1171.67268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.95	1	14.631	14.131	15.131	-0.31952								0	0	0	0.76902	1	4933	4933		4.3292	0	1				17307	624	10595	10652	16613	16613					0.09371061547767567
KPARAKVGWL	10	Unmodified	_KPARAKVGWL_					0	0	0			REV__ENST00000324166.6_1_2:88471665-88471776:+|nuORF	REV__ENST00000324166.6_1_2:88471665-88471776:+|nuORF	MSMS	HCT116MG_D190212_S4	4	563.0694580078125	2	563.3482	1124.68185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.302	1	50.952	50.452	51.452	-0.35028								0	0	0	0.95507	1	19089	19089		3.5965	0.60125	1		+		17308	14894	10596	10653	16614	16614					0.12449410113458725
KPCLWLYKRKL	11	Unmodified	_KPCLWLYKRKL_					0	0	0			REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	724.433349609375	2	724.43395	1446.85335	0.71884	0.00052075	-1.379	-0.00099899	-0.66015	-0.00047824	724.4325646774945	51.588	0.72754	51.588	51.5	52.228	0					14	13	2	0	0	0	0.74191	1	19770	19770		2.7352	1.6637	1	19464000	+		17309	16674	10597	10654	16615	16615					0.14779399089593426
KPCLWLYKRKL	11	Unmodified	_KPCLWLYKRKL_					0	0	0			REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MSMS	HCT116MG_D190212_S4	4	724.4326782226562	2	724.43395	1446.85335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.604	1	52.264	51.764	52.764	-0.34023								0	0	0	0.9598	1	19615	19615		1.1933	0.84271	1		+		17310	16674	10597	10654	16616	16616					0.14779399089593426
KPDDDTDMY	9	Unmodified	_KPDDDTDMY_					0	0	0		SORBS2|p.A565Gfs*10|1|0.32|ENSG00000154556|chr4:185623723-185623724|-/C|frameshift_variant;ENSG00000154556|ENST00000695409|SORBS2;nc|ENSG00000154556|O94875-5|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2;SORBS2|p.A565Lfs*49|1|0.16|ENSG00000154556|chr4:185623725-185623725|G/-|frameshift_variant;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;ENST00000470685.5_1_4:186567806-186696403:-|nuORF;ENST00000490779.5_1_4:186567204-186578685:-|nuORF;ENST00000492810.5_1_4:186567204-186577840:-|nuORF;ENST00000466289.5_1_4:186567806-186577840:-|nuORF;nc|ENSG00000154556|O94875-6|SORBS2	SORBS2|p.A565Gfs*10|1|0.32|ENSG00000154556|chr4:185623723-185623724|-/C|frameshift_variant	SORBS2|p.A565Gfs*10|1|0.32|ENSG00000154556|chr4:185623723-185623724|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	550.2174072265625	2	550.216054	1098.41756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.414	1	37.03	36.53	37.53	-0.3839								0	0	0	0.76913	1	13729	13729		3.9444	1.6417	1				17311	18184	10598	10655	16617	16617					-0.12771677283944882
KPDLRKFIKSQ	11	Unmodified	_KPDLRKFIKSQ_					0	0	0		ENST00000531608.1_1_11:130781387-130786189:-|nuORF	ENST00000531608.1_1_11:130781387-130786189:-|nuORF	ENST00000531608.1_1_11:130781387-130786189:-|nuORF	MSMS	HCT116MG_D190212_S4	4	680.4070434570312	2	680.408986	1358.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.318	1	49.959	49.459	50.459	-0.35878								0	0	0	0.95772	1	18691	18691		2.2828	0.95324	1				17312	8623	10599	10656	16618	16618					0.1383698768531758
KPDPAPPGGPS	11	Unmodified	_KPDPAPPGGPS_					0	0	0		ENST00000301019.8_1_16:88874851-88875028:+|nuORF	ENST00000301019.8_1_16:88874851-88875028:+|nuORF	ENST00000301019.8_1_16:88874851-88875028:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	510.7598571777344	2	510.261456	1018.50836	0.19088	9.7401E-05	-2.7048	-0.0013801	-2.5139	-0.0012827	510.7605777535483	26.061	0.62457	25.771	25.464	26.088	-0.29022					19	11	2	0	0	0	0.65047	1	9310	9310		29.841	0.759	1	3648800			17313	6996	10600	10657	16619	16619					-0.00015420453473780071
KPDPGLGPE	9	Unmodified	_KPDPGLGPE_					0	0	0			REV__ENST00000494092.1_1_1:44685134-44686104:+|nuORF	REV__ENST00000494092.1_1_1:44685134-44686104:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	455.2388000488281	2	455.23745	908.460347	0.1787	8.1352E-05	0.7894	0.00035936	0.9681	0.00044072	455.2378421839253	31.83	0.57265	31.56	31.221	31.794	-0.27028					14	10	2	0	0	0	0.34272	1	11670	11670		26.268	3.5319	1	6425700	+		17314	13592	10601	10658	16620	16620					0.002455056264693667
KPDVTVSLKF	10	Unmodified	_KPDVTVSLKF_					0	0	0			REV__ENST00000487169.5_1_2:242169444-242174670:-|nuORF	REV__ENST00000487169.5_1_2:242169444-242174670:-|nuORF	MSMS	HCT116MG_D190212_S2	2	567.7734375	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.254	1	54.064	53.564	54.564	-0.1894								0	0	0	0.93202	1	20883	20883		8.7454	0.58988	1		+		17315	11553	10602	10659	16621	16621					0.0881915819995811
KPEGEAGRSPG	11	Unmodified	_KPEGEAGRSPG_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	HCT116MG_D190212_S4	4	542.772705078125	2	542.772719	1083.53089	0.4168	0.00022623	0.026834	1.4565E-05	0.44364	0.00024079	542.7726519940607	18.886	0.77977	18.704	18.406	19.186	-0.182					33	14	3	0	0	0	0.60456	1	6325	6325		34.932	2.8946	1	4847200			17316	2032	10603	10660	16622	16622					-0.007538210558550418
KPEGEAGRSPG	11	Unmodified	_KPEGEAGRSPG_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	542.772719	1083.53089	0.48606	0.00026382	-0.0418	-2.2688E-05	0.44426	0.00024113	542.7725719764597	19.231	0.57214	18.862	18.732	19.304	-0.3695	0.077885	-9.2148E-05	NaN	34.932	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6762100			17317	2032	10603	10660							-0.007538210558550418
KPEGEAGRSPG	11	Unmodified	_KPEGEAGRSPG_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	542.772719	1083.53089	0.4168	0.00022623	0.026834	1.4565E-05	0.44364	0.00024079	542.7726519940607	18.886	0.77977	18.704	18.406	19.186	-0.182	-0.079571	-1.7643E-05	NaN	34.932	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4847200			17318	2032	10603	10660							-0.007538210558550418
KPELKVKRVF	10	Unmodified	_KPELKVKRVF_					0	0	0		ENSG00000166669|ENST00000562102|ATF7IP2	ENSG00000166669|ENST00000562102|ATF7IP2	ENSG00000166669|ENST00000562102|ATF7IP2	MSMS	HCT116MG_D190212_S2	2	622.4010009765625	2	622.39789	1242.78123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.384	1	45.292	44.792	45.792	-0.092472								0	0	0	0.95648	1	17257	17257		3.2813	1.6287	1				17319	4871	10604	10661	16623	16623					0.16954808007540123
KPELRKMVHP	10	Unmodified	_KPELRKMVHP_					0	0	0		ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	MSMS	HCT116MG_D190212_S2	2	617.8583374023438	2	617.858075	1233.7016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.043	1	47.91	47.41	48.41	-0.13281								0	0	0	0.93711	1	18343	18343		7.609	0.88579	1				17320	7098	10605	10662	16624	16624					0.09409418061909491
KPFQIFRAELW	11	Unmodified	_KPFQIFRAELW_					0	0	0		PCDHB7|p.A540Rfs*2|1|0.1|ENSG00000113212|chr5:141174448-141174448|C/-|frameshift_variant;ENSG00000113212|ENST00000231137|PCDHB7	PCDHB7|p.A540Rfs*2|1|0.1|ENSG00000113212|chr5:141174448-141174448|C/-|frameshift_variant	PCDHB7|p.A540Rfs*2|1|0.1|ENSG00000113212|chr5:141174448-141174448|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	717.8988647460938	2	717.898254	1433.78196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.036	1	15.701	15.201	16.201	-0.33451								0	0	0	0.95731	1	5370	5370		2.4985	0.21571	1				17321	2373	10606	10663	16625	16625					0.08241602656607938
KPGIKIFRFVA	11	Unmodified	_KPGIKIFRFVA_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MSMS	HCT116MG_D190212_S1	1	638.410400390625	2	638.400433	1274.78631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.125	1	61.125	60.625	61.625	0								0	0	0	0.95273	1	23579	23579		4.897	1.9018	1				17322	4265	10607	10664	16626	16626					0.15991111870152963
KPGKRSRT	8	Unmodified	_KPGKRSRT_					0	0	0		MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant;ENSG00000125686|ENST00000300651|MED1	MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant	MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	465.2853698730469	2	465.2856	928.556647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.232	1	52.929	52.429	53.429	-0.30305								0	0	0	0.8837	1	20142	20142		2.3027	0	1				17323	2899	10608	10665	16627	16627					0.08951117977085232
KPGKRVIGP	9	Unmodified	_KPGKRVIGP_					0	0	0		nc|ENSG00000157741|Q6ZU65-2|UBN2;UBN2|p.S988Hfs*27|1|0.18|ENSG00000157741|chr7:139283862-139283862|C/-|frameshift_variant;UBN2|p.G1191Efs*28|1|0.17|ENSG00000157741|chr7:139284473-139284473|G/-|frameshift_variant;ENSG00000157741|ENST00000473989|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	MSMS	HCT116MG_D190212_S3	3	476.3063659667969	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.529	1	53.226	52.726	53.726	-0.30305								0	0	0	0.76973	1	20261	20261		1.8442	1.0506	1				17324	4342	10609	10666	16628	16628					0.12525763159317194
KPGLPSRTRR	10	Unmodified	_KPGLPSRTRR_					0	0	0		ENST00000572050.1_3_17:79211356-79212635:-|nuORF	ENST00000572050.1_3_17:79211356-79212635:-|nuORF	ENST00000572050.1_3_17:79211356-79212635:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	584.3571166992188	2	584.357088	1166.69962	0.79882	0.0004668	-1.2836	-0.00075006	-0.48474	-0.00028326	584.3562719612781	48.003	1.4371	47.87	46.911	48.348	-0.13281					58	27	3	0	0	0	0.87059	1	18246	18246		5.7319	0.83484	1	63683000			17325	8899	10610	10667	16629	16629					0.122941253683166
KPGLPSRTRR	10	Unmodified	_KPGLPSRTRR_					0	0	0		ENST00000572050.1_3_17:79211356-79212635:-|nuORF	ENST00000572050.1_3_17:79211356-79212635:-|nuORF	ENST00000572050.1_3_17:79211356-79212635:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	584.357088	1166.69962	0.41697	0.00024366	-1.2647	-0.00073904	-0.84774	-0.00049538	584.3562523664355	47.918	0.50566	47.918	47.646	48.152	0	-0.049125	-0.00029343	NaN	5.7319	25	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200990000			17326	8899	10610	10667							0.122941253683166
KPGLPSRTRR	10	Unmodified	_KPGLPSRTRR_					0	0	0		ENST00000572050.1_3_17:79211356-79212635:-|nuORF	ENST00000572050.1_3_17:79211356-79212635:-|nuORF	ENST00000572050.1_3_17:79211356-79212635:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	584.357088	1166.69962	0.58954	0.0003445	-0.87766	-0.00051287	-0.28812	-0.00016837	584.3564309262377	48.43	1.1956	48.114	47.514	48.71	-0.31596	0.14638	0.00015892	NaN	5.7319	38	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10228000			17327	8899	10610	10667							0.122941253683166
KPGRESRLRL	10	Unmodified	_KPGRESRLRL_					0	0	0		ENSG00000204424|ENST00000375832|LY6G6F;nc|ENSG00000204424|Q5SQ64-2|LY6G6F	ENSG00000204424|ENST00000375832|LY6G6F	ENSG00000204424|ENST00000375832|LY6G6F	MSMS	HCT116MG_D190212_S1	1	606.36865234375	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.848	1	52.848	52.348	53.348	0								0	0	0	0.96453	1	20224	20224		1.4819	0.15237	1				17328	6332	10611	10668	16630	16630					0.12890394539772387
KPGRHSVRIT	10	Unmodified	_KPGRHSVRIT_					0	0	0		ENST00000585917.5_1_19:28284461-28284521:+|nuORF	ENST00000585917.5_1_19:28284461-28284521:+|nuORF	ENST00000585917.5_1_19:28284461-28284521:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	575.8432006835938	2	575.843813	1149.67307	0.35781	0.00020604	-0.64397	-0.00037083	-0.28616	-0.00016478	575.8431393031508	48.348	1.1683	47.981	47.258	48.426	-0.36728					50	30	3	0	0	0	0.88195	1	17699	17699		2.9952	2.9952	1	10545000			17329	8989	10612	10669	16631	16631					0.10422436476960684
KPGRKKKKKK	10	Unmodified	_KPGRKKKKKK_					0	0	0			REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant	REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	409.2921142578125	3	409.290825	1224.85064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.846	1	40.545	40.045	41.045	-0.30161								0	0	0	0.97045	1	15177	15177		0.15932	0.15932	1		+		17330	11423	10613	10670	16632	16632					0.2472131174695278
KPGRKKKKKK	10	Unmodified	_KPGRKKKKKK_					0	0	0			REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant	REV__METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	409.2919006347656	3	409.290825	1224.85064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.959	1	40.582	40.082	41.082	-0.37732								0	0	0	0.97054	1	15046	15046		0.13989	0.13989	1		+		17331	11423	10613	10670	16633	16633					0.2472131174695278
KPGRKRKKHKK	11	Unmodified	_KPGRKRKKHKK_					0	0	0		VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.K179Rfs*12|1|0.42|ENSG00000129003|chr15:62023499-62023499|T/-|frameshift_variant;VPS13C|p.S463Vfs*3|1|0.39|ENSG00000129003|chr15:61991770-61991771|-/T|frameshift_variant;VPS13C|p.S1021Hfs*3|1|0.08|ENSG00000129003|chr15:61964852-61964852|A/-|frameshift_variant;VPS13C|p.N1066Ifs*25|2|0.27|ENSG00000129003|chr15:61964716-61964716|T/-|frameshift_variant;VPS13C|p.D1169Ifs*15|1|0.38|ENSG00000129003|chr15:61962469-61962469|C/-|frameshift_variant	VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	695.9666137695312	2	695.965129	1389.9157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.631	1	25.631	25.131	26.131	0								0	0	0	0.9598	1	9228	9228		1.1933	0.88631	1				17332	3019	10614	10671	16634	16634					0.23634306272811045
KPGSKIFKT	9	Unmodified	_KPGSKIFKT_					0	0	0		PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	503.30609130859375	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.749	1	53.42	52.92	53.92	-0.32923								0	0	0	0.76973	1	20077	20077		1.8442	0.6509	1				17333	9789	10615	10672	16635	16635					0.09974923719596518
KPGSKTLVSPI	11	Unmodified	_KPGSKTLVSPI_					0	0	0		ENST00000601785.5_1_19:51738808-51742940:+|nuORF	ENST00000601785.5_1_19:51738808-51742940:+|nuORF	ENST00000601785.5_1_19:51738808-51742940:+|nuORF	MSMS	HCT116MG_D190212_S3	3	563.8428344726562	2	563.845156	1125.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.091	1	39.79	39.29	40.29	-0.30137								0	0	0	0.95636	1	14872	14872		2.9952	0.69251	1				17334	9089	10616	10673	16636	16636					0.11794847091277916
KPGSPSVP	8	Unmodified	_KPGSPSVP_					0	0	0			REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C	REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MSMS	HCT116MG_D190212_S4	4	384.7148132324219	2	384.716153	767.417754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.683	1	40.305	39.805	40.805	-0.37828								0	0	0	0.8837	1	14935	14935		2.5775	0	1		+		17335	11025	10617	10674	16637	16637					0.02474155288905422
KPGWGGRLG	9	Unmodified	_KPGWGGRLG_					0	0	0		ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	MSMS	HCT116MG_D190212_S1	1	463.9283142089844	2	464.261594	926.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.231	1	50.231	49.731	50.731	0								0	0	0	0.76913	1	19161	19161		3.9444	1.3669	1				17336	8286	10618	10675	16638	16638					0.04244044057031715
KPGWISRSRS	10	Unmodified	_KPGWISRSRS_					0	0	0		nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MSMS	HCT116MG_D190212_S4	4	587.32763671875	2	587.327996	1172.64144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.451	1	49.088	48.588	49.588	-0.36213								0	0	0	0.94746	1	18343	18343		5.2969	0.76802	1				17337	9482	10619	10676	16639	16639					0.06202443723032047
KPHECNECGK	10	Unmodified	_KPHECNECGK_					0	0	0		ENSG00000106261|ENST00000324306|ZKSCAN1	ENSG00000106261|ENST00000324306|ZKSCAN1	ENSG00000106261|ENST00000324306|ZKSCAN1	MULTI-MSMS	HCT116MG_D190212_S4	4	573.2494506835938	2	572.747333	1143.48011	0.50886	0.00029145	1.2327	0.00070604	1.7416	0.00099749	572.7476875333437	19.29	0.46793	19.103	18.765	19.233	-0.18674					10	8	2	0	0	0	0.68559	1	6525	6525		21.59	0.053175	1	2161100			17338	2065	10620	10677	16640	16640					-0.08588809696743738
KPHPWFFGK	9	Unmodified	_KPHPWFFGK_					0	0	0		ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MSMS	HCT116MG_D190212_S1	1	381.87451171875	3	381.874788	1142.60253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7983	1	4.7983	4.2983	5.2983	0								0	0	0	0.76995	1	1444	1444		1.0715	0.3738	1				17339	5477	10621	10678	16641	16641					0.03693763159321861
KPHVELRRSS	10	Unmodified	_KPHVELRRSS_					0	0	0		ENST00000238497.9_1_18:61067292-61067792:-|nuORF	ENST00000238497.9_1_18:61067292-61067792:-|nuORF	ENST00000238497.9_1_18:61067292-61067792:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	604.8472290039062	2	604.846553	1207.67855	0.29227	0.00017678	-0.64771	-0.00039177	-0.35545	-0.00021499	604.8461779905333	50.654	1.1869	50.654	50.162	51.349	0					51	22	3	0	0	0	0.87239	1	19212	19212		5.2969	0.39987	1	33659000			17340	6777	10622	10679	16642	16642					0.08302115268816124
KPIPLENP	8	Unmodified	_KPIPLENP_					0	0	0		NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L;NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant;ENST00000461562.1_1_10:96121274-96122595:-|nuORF;ENST00000463649.5_1_10:96117838-96122595:-|nuORF	NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant	NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	454.7453918457031	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.615	1	31.345	30.845	31.845	-0.27028								0	0	0	0.72655	1	11557	11557		28.487	0	1				17341	5275	10623	10680	16643	16643					0.06046972902845482
KPIQANQYN	9	Unmodified	_KPIQANQYN_					0	0	0		HTR2B|p.K426*|1|0.38|ENSG00000135914|chr2:231108687-231108688|-/A|frameshift_variant;ENSG00000135914|ENST00000258400|HTR2B	HTR2B|p.K426*|1|0.38|ENSG00000135914|chr2:231108687-231108688|-/A|frameshift_variant	HTR2B|p.K426*|1|0.38|ENSG00000135914|chr2:231108687-231108688|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	538.3043212890625	2	538.28018	1074.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.096	1	26.096	25.596	26.596	0								0	0	0	0.76759	1	9415	9415		9.3831	2.66	1				17342	3380	10624	10681	16644	16644					0.011516708121462216
KPITYHWYHWH	11	Unmodified	_KPITYHWYHWH_					0	0	0		ENSG00000170074|ENST00000614127|FAM153A	ENSG00000170074|ENST00000614127|FAM153A	ENSG00000170074|ENST00000614127|FAM153A	MSMS	HCT116MG_D190212_S3	3	784.383056640625	2	784.383303	1566.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.427	1	20.475	19.975	20.975	0.048107								0	0	0	0.95954	1	7064	7064		1.3295	0	1				17343	5112	10625	10682	16645	16645					-0.008653362887343974
KPIVALKLC	9	Unmodified	_KPIVALKLC_					0	0	0			REV__ENST00000519830.1_1_8:30034697-30036938:+|nuORF	REV__ENST00000519830.1_1_8:30034697-30036938:+|nuORF	MSMS	HCT116MG_D190212_S1	1	492.8171691894531	2	492.817356	983.620159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.736	1	12.736	12.236	13.236	0								0	0	0	0.77025	1	4104	4104		0	0	1		+		17344	16225	10626	10683	16646	16646					0.12769342369938386
KPKAAKPKAT	10	Unmodified	_KPKAAKPKAT_					0	0	0			REV__ENSG00000168298|ENST00000304218|H1-4	REV__ENSG00000168298|ENST00000304218|H1-4	MSMS	HCT116MG_D190212_S3	3	520.4120483398438	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.077	1	49.762	49.262	50.262	-0.31525								0	0	0	0.91638	1	18874	18874		12.241	0	1		+		17345	13194	10627	10684	16647	16647					0.13718301502262875
KPKAKAVFF	9	Unmodified	_KPKAKAVFF_					0	0	0		nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2	nc|ENSG00000006607|O94887-3|FARP2	nc|ENSG00000006607|O94887-3|FARP2	MULTI-SECPEP	HCT116MG_D190212_S1	1	518.3837280273438	2	518.32112	1034.62769	0.34936	0.00018108	1.2494	0.00064759	1.5988	0.00082867	518.3219628864334	49.261	0.31056	49.261	49.027	49.337	0					8	5	2	0	0	0	0.26505	1	18742	18742		6.7232	3.1267	1	17328000			17346	831	10628	10685	16648	16648					0.11175817961884604
KPKALLADDPW	11	Unmodified	_KPKALLADDPW_					0	0	0			REV__PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant	REV__PHF2|p.K492Rfs*6|1|0.4|ENSG00000197724|chr9:93660330-93660330|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	627.35107421875	2	627.348063	1252.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.718	1	51.534	51.034	52.034	-0.18369								0	0	0	0.94538	1	19850	19850		8.7454	0.58988	1		+		17347	14088	10629	10686	16649	16649					0.06533945602927815
KPKALLRTPPP	11	Unmodified	_KPKALLRTPPP_					0	0	0			REV__nc|ENSG00000170011|Q8NFW9-5|MYRIP	REV__nc|ENSG00000170011|Q8NFW9-5|MYRIP	MSMS	HCT116MG_D190212_S3	3	609.4910278320312	2	609.390065	1216.76558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.602	1	50.289	49.789	50.789	-0.31381								0	0	0	0.95343	1	19086	19086		4.5289	1.2476	1		+		17348	13277	10630	10687	16650	16650					0.16586521490512496
KPKAQNLKL	9	Unmodified	_KPKAQNLKL_					0	0	0		ENST00000380412.6_1_16:30536928-30537126:-|nuORF	ENST00000380412.6_1_16:30536928-30537126:-|nuORF	ENST00000380412.6_1_16:30536928-30537126:-|nuORF	MSMS	HCT116MG_D190212_S2	2	520.3331298828125	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.037	1	52.848	52.348	53.348	-0.18922								0	0	0	0.76818	1	20387	20387		7.2892	1.5574	1				17349	7565	10631	10688	16651	16651					0.13718301502262875
KPKAQNLKL	9	Unmodified	_KPKAQNLKL_					0	0	0		ENST00000380412.6_1_16:30536928-30537126:-|nuORF	ENST00000380412.6_1_16:30536928-30537126:-|nuORF	ENST00000380412.6_1_16:30536928-30537126:-|nuORF	MSMS	HCT116MG_D190212_S3	3	520.332763671875	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.151	1	50.839	50.339	51.339	-0.31166								0	0	0	0.76818	1	19306	19306		7.2892	0	1				17350	7565	10631	10688	16652	16652					0.13718301502262875
KPKARVLVE	9	Unmodified	_KPKARVLVE_					0	0	0			REV__ENSG00000173431|ENST00000308227|RNASE8	REV__ENSG00000173431|ENST00000308227|RNASE8	MSMS	HCT116MG_D190212_S3	3	520.332763671875	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.326	1	52.017	51.517	52.517	-0.30883								0	0	0	0.76834	1	19778	19778		6.7232	1.4263	1		+		17351	13437	10632	10689	16653	16653					0.13718301502285613
KPKARVLVE	9	Unmodified	_KPKARVLVE_					0	0	0			REV__ENSG00000173431|ENST00000308227|RNASE8	REV__ENSG00000173431|ENST00000308227|RNASE8	MSMS	HCT116MG_D190212_S3	3	520.3328857421875	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.902	1	52.595	52.095	53.095	-0.30639								0	0	0	0.76834	1	20009	20009		6.7232	2.7788	1		+		17352	13437	10632	10689	16654	16654					0.13718301502285613
KPKARVLVE	9	Unmodified	_KPKARVLVE_					0	0	0			REV__ENSG00000173431|ENST00000308227|RNASE8	REV__ENSG00000173431|ENST00000308227|RNASE8	MSMS	HCT116MG_D190212_S3	3	520.3327026367188	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.477	1	53.173	52.673	53.673	-0.30305								0	0	0	0.76923	1	20240	20240		3.5965	1.7523	1		+		17353	13437	10632	10689	16655	16655					0.13718301502285613
KPKEPQRVRN	10	Unmodified	_KPKEPQRVRN_					0	0	0			REV__FAM83B|p.S772Lfs*4|1|0.26|ENSG00000168143|chr6:54941281-54941281|G/-|frameshift_variant	REV__FAM83B|p.S772Lfs*4|1|0.26|ENSG00000168143|chr6:54941281-54941281|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	626.3673706054688	2	626.367653	1250.72075	0.59853	0.0003749	-0.87163	-0.00054596	-0.2731	-0.00017106	626.3667837230021	49.621	1.5489	49.621	48.819	50.368	0					42	29	2	0	0	0	0.88823	1	18960	18960		1.4819	1.4819	1	31774000	+		17354	13187	10633	10690	16656	16656					0.1054209067717693
KPKFCFWP	8	Unmodified	_KPKFCFWP_					0	0	0			REV__NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	REV__NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	351.51708984375	3	351.517724	1051.53134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.799	1	23.542	23.042	24.042	-0.2568								0	0	0	0.8837	1	8352	8352		3.5965	0.8613	1		+		17355	12432	10634	10691	16657	16657					0.0076392713028781145
KPKLALRVKIR	11	Unmodified	_KPKLALRVKIR_					0	0	0			REV__ENST00000537638.6_1_12:57881209-57881347:+|nuORF	REV__ENST00000537638.6_1_12:57881209-57881347:+|nuORF	MSMS	HCT116MG_D190212_S4	4	661.4613037109375	2	661.461356	1320.90816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.451	1	51.101	50.601	51.601	-0.35028								0	0	0	0.9598	1	19149	19149		1.1933	0.88631	1		+		17356	16352	10635	10692	16658	16658					0.26054153952532033
KPKLIKYFLEI	11	Unmodified	_KPKLIKYFLEI_					0	0	0			REV__tr|U7SKQ3|U7SKQ3_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01974PE=4SV=1	REV__tr|U7SKQ3|U7SKQ3_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01974PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	696.9375	2	696.436681	1390.85881	0.65891	0.00045889	-0.26122	-0.00018192	0.39769	0.00027697	696.9370779574399	61.054	2.1211	61.054	60.387	62.508	0					114	40	4	0	0	0	0.74191	1	23517	23517		1.1933	0	1	27083000	+		17357	17702	10636	10693	16659	16659					0.1790140115306258
KPKLIKYFLEI	11	Unmodified	_KPKLIKYFLEI_					0	0	0			REV__tr|U7SKQ3|U7SKQ3_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01974PE=4SV=1	REV__tr|U7SKQ3|U7SKQ3_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01974PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	696.437744140625	2	696.436681	1390.85881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.203	1	48.07	47.57	48.57	-0.13289								0	0	0	0.9598	1	18409	18409		1.1933	0	1		+		17358	17702	10636	10693	16660	16660					0.1790140115306258
KPKLIKYFLEI	11	Unmodified	_KPKLIKYFLEI_					0	0	0			REV__tr|U7SKQ3|U7SKQ3_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01974PE=4SV=1	REV__tr|U7SKQ3|U7SKQ3_FUSNUMetallo-beta-lactamasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01974PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	696.437744140625	2	696.436681	1390.85881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.048	1	50.869	50.369	51.369	-0.17868								0	0	0	0.95636	1	19577	19577		2.9952	0	1		+		17359	17702	10636	10693	16661	16661					0.1790140115306258
KPKLLSKRR	9	Unmodified	_KPKLLSKRR_					0	0	0			REV__nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	REV__nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	MSMS	HCT116MG_D190212_S4	4	563.6229248046875	2	563.382574	1124.7506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.157	1	50.802	50.302	51.302	-0.35483								0	0	0	0.76923	1	19031	19031		3.5965	1.2938	1		+		17360	12908	10637	10694	16662	16662					0.19321074413164752
KPKLRNFRRPR	11	Unmodified	_KPKLRNFRRPR_					0	0	0		ENST00000549009.1_1_12:110574622-110600787:+|nuORF	ENST00000549009.1_1_12:110574622-110600787:+|nuORF	ENST00000549009.1_1_12:110574622-110600787:+|nuORF	MSMS	HCT116MG_D190212_S1	1	734.4616088867188	2	734.46021	1466.90587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.113	1	61.113	60.613	61.613	0								0	0	0	0.9598	1	23574	23574		1.1933	0.735	1				17361	8743	10638	10695	16663	16663					0.19109118267419944
KPKPAPIIKK	10	Unmodified	_KPKPAPIIKK_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	HCT116MG_D190212_S2	2	560.1055908203125	2	560.384251	1118.75395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.11	1	48.956	48.456	49.456	-0.15405								0	0	0	0.95776	1	18785	18785		2.9952	1.151	1		+		17362	11628	10639	10696	16664	16664					0.19932324467185936
KPKPQKPTH	9	Unmodified	_KPKPQKPTH_					0	0	0		IRS4|p.S1063Afs*9|1|0.36|ENSG00000133124|chrX:108733159-108733159|G/-|frameshift_variant;ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4	IRS4|p.S1063Afs*9|1|0.36|ENSG00000133124|chrX:108733159-108733159|G/-|frameshift_variant	IRS4|p.S1063Afs*9|1|0.36|ENSG00000133124|chrX:108733159-108733159|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	354.21221923828125	3	354.213581	1059.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.679	1	26.378	25.878	26.878	-0.30087								0	0	0	0.76948	1	9515	9515		2.7352	1.6637	1				17363	3230	10640	10697	16665	16665					0.091488443254093
KPKQASLRRQ	10	Unmodified	_KPKQASLRRQ_					0	0	0			REV__ENST00000395340.5_1_20:61521863-61522052:-|nuORF	REV__ENST00000395340.5_1_20:61521863-61522052:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	606.3699340820312	2	606.370195	1210.72584	0.68118	0.00041305	-0.84134	-0.00051016	-0.16016	-9.7115E-05	606.3695019551857	49.013	1.0637	48.859	48.174	49.238	-0.15405					43	20	3	0	0	0	0.84626	1	18767	18767		8.1555	2.4237	1	152560000	+		17364	15347	10641	10698	16666	16666					0.12890394539795125
KPKRPRRPP	9	Unmodified	_KPKRPRRPP_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MSMS	HCT116MG_D190212_S3	3	566.8052978515625	2	566.364716	1130.71488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.791	1	45.48	44.98	45.98	-0.31094								0	0	0	0.768	1	17155	17155		7.9102	1.187	1		+		17365	11031	10642	10699	16667	16667					0.15475036956172517
KPKRPRRPP	9	Unmodified	_KPKRPRRPP_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MSMS	HCT116MG_D190212_S4	4	566.814208984375	2	566.364716	1130.71488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.634	1	50.279	49.779	50.779	-0.35483								0	0	0	0.76967	1	18819	18819		2.0598	0.21551	1		+		17366	11031	10642	10699	16668	16668					0.15475036956172517
KPKRQKLKHR	10	Unmodified	_KPKRQKLKHR_					0	0	0		ENST00000395468.8_1_14:55534598-55534688:+|nuORF	ENST00000395468.8_1_14:55534598-55534688:+|nuORF	ENST00000395468.8_1_14:55534598-55534688:+|nuORF	MSMS	HCT116MG_D190212_S2	2	659.8715209960938	2	659.930754	1317.84696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.566	1	15.239	14.739	15.739	-0.32684								0	0	0	0.96453	1	5181	5181		1.4819	0	1				17367	7646	10643	10700	16669	16669					0.20074641973087637
KPKRRNFLYRR	11	Unmodified	_KPKRRNFLYRR_					0	0	0			REV__ZNF236|p.Q331Rfs*24|1|0.24|ENSG00000130856|chr18:76880120-76880120|T/-|frameshift_variant	REV__ZNF236|p.Q331Rfs*24|1|0.24|ENSG00000130856|chr18:76880120-76880120|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	767.4630126953125	2	767.465493	1532.91643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.858	1	49.858	49.358	50.358	0								0	0	0	0.96157	1	19009	19009		0.26902	0	1		+		17368	18073	10644	10701	16670	16670					0.17129100921852114
KPKRVDHER	9	Unmodified	_KPKRVDHER_					0	0	0			REV__ENSG00000187391|ENST00000354212|MAGI2	REV__ENSG00000187391|ENST00000354212|MAGI2	MULTI-MSMS	HCT116MG_D190212_S1	1	582.8331909179688	2	582.833446	1163.65234	0.41381	0.00024118	-0.76006	-0.00044299	-0.34625	-0.00020181	582.8327736500133	49.905	1.1337	49.905	49.44	50.574	0					40	21	2	0	0	0	0.72852	1	18980	18980		3.2813	3.2813	1	21936000	+		17369	13922	10645	10702	16671	16671					0.07705846097314861
KPKTFLLKVTW	11	Unmodified	_KPKTFLLKVTW_					0	0	0		ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENST00000469420.1_1_22:39267340-39268216:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	454.0589599609375	3	454.283224	1359.82784	0.2464	0.00011193	0.90956	0.0004132	1.156	0.00052513	454.2836508845617	51.6	1.2957	51.249	50.424	51.72	-0.35028					59	24	4	0	0	0	0.74191	1	19154	19154		0.45452	0.29519	1	7648900			17370	8136	10646	10703	16672	16672					0.1623224783884325
KPKVTQLYKCR	11	Unmodified	_KPKVTQLYKCR_					0	0	0		METTL18|p.S267Ffs*3|1|0.12|ENSG00000171806|chr1:169792896-169792897|-/A|frameshift_variant;METTL18|p.S267Lfs*12|1|0.28|ENSG00000171806|chr1:169792897-169792897|A/-|frameshift_variant;ENSG00000171806|ENST00000310392|METTL18	METTL18|p.S267Ffs*3|1|0.12|ENSG00000171806|chr1:169792896-169792897|-/A|frameshift_variant	METTL18|p.S267Ffs*3|1|0.12|ENSG00000171806|chr1:169792896-169792897|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	682.3489379882812	2	682.397564	1362.78058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.323	1	55.135	54.635	55.635	-0.18797								0	0	0	0.9584	1	21323	21323		2.086	0	1				17371	5213	10647	10704	16673	16673					0.11369645296190356
KPKWKEKIF	9	Unmodified	_KPKWKEKIF_					0	0	0			REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	REV__nc|ENSG00000001461|Q6P499-3|NIPAL3	MSMS	HCT116MG_D190212_S1	1	602.3683471679688	2	602.366059	1202.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.493	1	50.493	49.993	50.993	0								0	0	0	0.76923	1	19268	19268		3.5965	0.60125	1		+		17372	10461	10648	10705	16674	16674					0.12431447570452292
KPLKRKFRFAA	11	Unmodified	_KPLKRKFRFAA_					0	0	0			REV__nc|ENSG00000002726|P19801-2|AOC1	REV__nc|ENSG00000002726|P19801-2|AOC1	MSMS	HCT116MG_D190212_S2	2	681.4319458007812	2	681.430056	1360.84556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.916	1	32.705	32.205	33.205	-0.21135								0	0	0	0.95686	1	12196	12196		2.7352	0	1		+		17373	10463	10649	10706	16675	16675					0.1795700788436534
KPLLLLVLVL	10	Unmodified	_KPLLLLVLVL_					0	0	0			REV__ENST00000420027.3_1_20:48698052-48698115:-|nuORF	REV__ENST00000420027.3_1_20:48698052-48698115:-|nuORF	MSMS	HCT116MG_D190212_S3	3	561.027099609375	2	560.907028	1119.7995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.38	1	50.065	49.565	50.565	-0.31525								0	0	0	0.96937	1	18996	18996		0.40072	0.050084	1		+		17374	15514	10650	10707	16676	16676					0.24439549929547866
KPLLLPQP	8	Unmodified	_KPLLLPQP_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant;MGA|p.E1249Rfs*25|2|0.28|ENSG00000174197|chr15:41729243-41729244|-/A|frameshift_variant;MGA|p.E1249Rfs*42|1|0.17|ENSG00000174197|chr15:41729244-41729244|A/-|frameshift_variant;MGA|p.L1297Wfs*39|1|0.3|ENSG00000174197|chr15:41734566-41734566|C/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	453.29461669921875	2	453.294571	904.574589	0.25273	0.00011456	0.072011	3.2642E-05	0.32474	0.0001472	453.2944586947183	20.618	0.20805	20.618	20.488	20.696	0					5	3	2	0	0	0	0.82475	1	7245	7245		8.5933	2.2392	1	4786200			17375	5320	10651	10708	16677	16677					0.11848440179221598
KPLPLLLLKQ	10	Unmodified	_KPLPLLLLKQ_					0	0	0			REV__ENST00000345097.8_1_14:89626539-89626743:-|nuORF	REV__ENST00000345097.8_1_14:89626539-89626743:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2706604003906	3	388.268915	1161.78492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.761	1	23.512	23.012	24.012	-0.24928								0	0	0	0.97045	1	8336	8336		0.15932	0.064481	1		+		17376	15008	10652	10709	16678	16678					0.21049477781411952
KPLSERLKVVP	11	Unmodified	_KPLSERLKVVP_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MSMS	HCT116MG_D190212_S2	2	633.4029541015625	2	633.40063	1264.78671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.281	1	33.088	32.588	33.588	-0.19297								0	0	0	0.95636	1	12343	12343		2.9952	0.26005	1				17377	2914	10653	10710	16679	16679					0.16490486799352766
KPLVALFVM	9	Unmodified	_KPLVALFVM_					0	0	0			REV__ENST00000559781.5_1_15:81650758-81654299:+|nuORF	REV__ENST00000559781.5_1_15:81650758-81654299:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	509.2852783203125	2	509.311906	1016.60926	0.22571	0.00011496	0.054539	2.7777E-05	0.28025	0.00014273	509.31170453678794	53.324	0.93688	52.99	52.307	53.244	-0.33473					24	17	2	0	0	0	0.74607	1	19945	19945		2.0598	2.0598	1	3255500	+		17378	16480	10654	10711	16680	16680					0.10161939995668945
KPMLLLVF	8	Unmodified	_KPMLLLVF_					0	0	0		ENST00000392952.7_1_10:116194658-116195159:-|nuORF	ENST00000392952.7_1_10:116194658-116195159:-|nuORF	ENST00000392952.7_1_10:116194658-116195159:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	480.80084228515625	2	480.801174	959.587796	0.2063	9.9191E-05	0.063595	3.0577E-05	0.2699	0.00012977	480.8010860061331	51.83	1.9596	51.52	51.017	52.977	-0.30927					88	37	4	0	0	0	0.8506	1	19483	19483		5.2307	2.6532	1	138490000			17379	7619	10655	10712	16681	16681					0.10638554966976699
KPNTYFNEWQW	11	Unmodified	_KPNTYFNEWQW_					0	0	0			REV__GRIK2|p.G830Efs*34|1|0.07|ENSG00000164418|chr6:102055506-102055507|-/AA|frameshift_variant	REV__GRIK2|p.G830Efs*34|1|0.07|ENSG00000164418|chr6:102055506-102055507|-/AA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	756.8466796875	2	756.848958	1511.68336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.56	1	21.341	20.841	21.841	-0.21832								0	0	0	0.95273	1	7450	7450		4.897	1.9018	1		+		17380	16859	10656	10713	16682	16682					-0.052010453791126565
KPPDRKLLFIL	11	Unmodified	_KPPDRKLLFIL_					0	0	0			REV__ENST00000369797.7_1_10:105156463-105160223:+|nuORF	REV__ENST00000369797.7_1_10:105156463-105160223:+|nuORF	MSMS	HCT116MG_D190212_S2	2	670.4271240234375	2	670.426648	1338.83874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.832	1	14.513	14.013	15.013	-0.31952								0	0	0	0.95954	1	4885	4885		1.3295	0	1		+		17381	15149	10657	10714	16683	16683					0.18287650213142115
KPPFSVNPVY	10	Unmodified	_KPPFSVNPVY_					0	0	0		TAB3|p.Y613Mfs*4|1|0.37|ENSG00000157625|chrX:30843017-30843017|A/-|frameshift_variant;nc|ENSG00000157625|Q8N5C8-2|TAB3;ENSG00000157625|ENST00000288422|TAB3	TAB3|p.Y613Mfs*4|1|0.37|ENSG00000157625|chrX:30843017-30843017|A/-|frameshift_variant	TAB3|p.Y613Mfs*4|1|0.37|ENSG00000157625|chrX:30843017-30843017|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	574.3104858398438	2	574.310949	1146.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.898	1	54.604	54.104	55.104	-0.29434								0	0	0	0.94339	1	20812	20812		6.2058	0.47393	1				17382	4337	10658	10715	16684	16684					0.03990602511430552
KPPFTMRMM	9	Unmodified	_KPPFTMRMM_					0	0	0			REV__ENST00000298876.8_1_12:27625755-27627731:+|nuORF	REV__ENST00000298876.8_1_12:27625755-27627731:+|nuORF	MSMS	HCT116MG_D190212_S3	3	380.19134521484375	3	380.190514	1137.54971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.919	1	23.857	23.357	24.357	-0.061449								0	0	0	0.76973	1	8469	8469		0.96228	0	1		+		17383	14772	10659	10716	16685	16685					-0.013560222816522582
KPPIRLPLK	9	Unmodified	_KPPIRLPLK_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MSMS	HCT116MG_D190212_S2	2	531.361572265625	2	531.363319	1060.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.511	1	58.341	57.841	58.841	-0.1703								0	0	0	0.7701	1	22615	22615		0.52476	0	1		+		17384	13552	10660	10717	16686	16686					0.18415768778640995
KPPRGRKKKL	10	Unmodified	_KPPRGRKKKL_					0	0	0			REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	604.408935546875	2	604.409124	1206.80369	0.38744	0.00023417	-0.10615	-6.4156E-05	0.28129	0.00017002	604.4090335786741	58.596	0.25439	58.596	58.463	58.717	0					12	4	4	0	0	0	0.89272	1	22603	22603		0.40072	0.40072	1	42363000	+		17385	9992	10661	10718	16687	16687					0.20856452195857855
KPPRGRKKKL	10	Unmodified	_KPPRGRKKKL_					0	0	0			REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	604.409124	1206.80369	0.77038	0.00046562	-0.61237	-0.00037012	0.158	9.5499E-05	604.4087155391251	58.645	0.20455	58.48	58.352	58.557	-0.1653	-0.057718	-0.00050334	NaN	0.40072	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7499500	+		17386	9992	10661	10718							0.20856452195857855
KPQIKPKLKRR	11	Unmodified	_KPQIKPKLKRR_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MSMS	HCT116MG_D190212_S2	2	464.64874267578125	3	464.6489	1390.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.398	1	48.254	47.754	48.754	-0.1437								0	0	0	0.96121	1	18490	18490		0.45452	0.45452	1		+		17387	12607	10662	10719	16688	16688					0.24504654838460738
KPQLLPLQPP	10	Unmodified	_KPQLLPLQPP_					0	0	0		nc|ENSG00000168907|Q68DD2-2|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	MSMS	HCT116MG_D190212_S4	4	566.0704956054688	2	565.850242	1129.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.387	1	51.037	50.537	51.537	-0.35028								0	0	0	0.94339	1	19123	19123		6.2058	0	1				17388	5038	10663	10720	16689	16689					0.126274548164929
KPQNGIPLP	9	Unmodified	_KPQNGIPLP_					0	0	0		nc|ENSG00000185437|P55822-2|SH3BGR;ENSG00000185437|ENST00000333634|SH3BGR;nc|ENSG00000185437|P55822|SH3BGR	nc|ENSG00000185437|P55822-2|SH3BGR	nc|ENSG00000185437|P55822-2|SH3BGR	MULTI-MSMS	HCT116MG_D190212_S2	2	482.28460693359375	2	482.284734	962.554916	0.18049	8.7047E-05	-0.079286	-3.8238E-05	0.1012	4.8808E-05	482.28464066915524	45.853	1.1828	45.751	45.196	46.378	-0.1014					33	22	2	0	0	0	0.050578	1	17425	17425		74.423	10.186	1	41526000			17389	5829	10664	10721	16690	16690					0.07214064168476853
KPQNGIPLP	9	Unmodified	_KPQNGIPLP_					0	0	0		nc|ENSG00000185437|P55822-2|SH3BGR;ENSG00000185437|ENST00000333634|SH3BGR;nc|ENSG00000185437|P55822|SH3BGR	nc|ENSG00000185437|P55822-2|SH3BGR	nc|ENSG00000185437|P55822-2|SH3BGR	MSMS	HCT116MG_D190212_S3	3	482.2847900390625	2	482.284734	962.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.197	1	45.885	45.385	46.385	-0.31237								0	0	0	0.27276	1	17316	17316		42.095	0	1				17390	5829	10664	10721	16691	16691					0.07214064168476853
KPRKGGGG	8	Unmodified	_KPRKGGGG_					0	0	0			REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF	REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	378.23870849609375	2	378.727387	755.44022	-0.0047434	-1.7964E-06	2.0362	0.00077118	2.0315	0.00076939	378.727942109168	45.224	0.31298	44.915	44.732	45.045	-0.30927					8	5	2	0	0	0	0.33627	1	16933	16933		0	0	1	1347900	+		17391	15188	10665	10722	16692	16692					0.05271799477202421
KPRPIVPQIP	10	Unmodified	_KPRPIVPQIP_					0	0	0		ENST00000470356.3_1_19:3572943-3574226:+|nuORF;ENST00000488973.6_1_19:3573129-3574226:+|nuORF	ENST00000470356.3_1_19:3572943-3574226:+|nuORF	ENST00000470356.3_1_19:3572943-3574226:+|nuORF	MSMS	HCT116MG_D190212_S4	4	382.2434387207031	3	382.244881	1143.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.338	1	37.956	37.456	38.456	-0.38283								0	0	0	0.96337	1	14047	14047		1.7423	0.41263	1				17392	8147	10666	10723	16693	16693					0.14670563427694105
KPRRAERRP	9	Unmodified	_KPRRAERRP_					0	0	0		ENST00000392562.5_1_17:73401186-73401555:-|nuORF	ENST00000392562.5_1_17:73401186-73401555:-|nuORF	ENST00000392562.5_1_17:73401186-73401555:-|nuORF	MSMS	HCT116MG_D190212_S1	1	583.3534545898438	2	583.35488	1164.69521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.171	1	15.171	14.671	15.671	0								0	0	0	0.76913	1	5021	5021		3.9444	0.3479	1				17393	7612	10667	10724	16694	16694					0.11944660945414398
KPRWRLWQWWW	11	Unmodified	_KPRWRLWQWWW_					0	0	0			REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	864.4580688476562	2	864.457136	1726.89972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.167	1	29.883	29.383	30.383	-0.28453								0	0	0	0.95954	1	11080	11080		1.3295	1.3295	1		+		17394	17613	10668	10725	16695	16695					0.0653460003593409
KPSRRRRTEAP	11	Unmodified	_KPSRRRRTEAP_					0	0	0			REV__MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant	REV__MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	677.39501953125	2	677.394733	1352.77491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.85	1	51.85	51.35	52.35	0								0	0	0	0.95686	1	19818	19818		2.7352	0	1		+		17395	17027	10669	10726	16696	16696					0.11263682828757737
KPTGLRQSP	9	Unmodified	_KPTGLRQSP_					0	0	0			REV__nc|ENSG00000126787|Q15398-3|DLGAP5	REV__nc|ENSG00000126787|Q15398-3|DLGAP5	MULTI-MSMS	HCT116MG_D190212_S4	4	492.28582763671875	2	492.285266	982.555979	0.1364	6.7146E-05	0.21045	0.0001036	0.34685	0.00017075	492.28530767893034	51.327	0.98841	50.977	50.629	51.618	-0.35028					46	18	3	0	0	0	0.67781	1	19292	19292		6.7232	1.9672	1	19940000	+		17396	17120	10670	10727	16697	16697					0.06400278537364557
KPTKAARQ	8	Unmodified	_KPTKAARQ_					0	0	0		ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	MULTI-MSMS	HCT116MG_D190212_S2	2	450.2755432128906	2	450.274701	898.534849	0.055385	2.4939E-05	0.52214	0.00023511	0.57752	0.00026004	450.2748079621383	50.131	1.0357	49.967	49.737	50.773	-0.16369					55	19	4	0	0	0	0.85571	2	19188	19188;19420		4.3292	0.38484	1	491360000			17397	5750	10671	10728	16698;16699	16698					0.08152313228504227
KPTKAARQ	8	Unmodified	_KPTKAARQ_					0	0	0		ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	MULTI-MSMS	HCT116MG_D190212_S4	4	450.27520751953125	2	450.274701	898.534849	0.25141	0.0001132	-0.00074294	-3.3453E-07	0.25067	0.00011287	450.27460067603795	50.75	1.608	50.395	50.005	51.613	-0.35483					87	30	4	0	0	0	0.85329	2	18769	18769;18882		4.756	0.81161	1	286610000			17398	5750	10671	10728	16700;16701	16700					0.08152313228504227
KPTKAARQ	8	Unmodified	_KPTKAARQ_					0	0	0		ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	450.274701	898.534849	-0.027801	-1.2518E-05	-0.11968	-5.3887E-05	-0.14748	-6.6405E-05	450.2745317641641	49.776	0.41289	49.776	49.595	50.008	0	-0.095732	-0.00048649	NaN	4.3292	26	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763250000			17399	5750	10671	10728							0.08152313228504227
KPTKAKRDG	9	Unmodified	_KPTKAKRDG_					0	0	0		PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;PRR12|p.P506Lfs*44|1|0.33|ENSG00000126464|chr19:49599569-49599569|C/-|frameshift_variant;nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12	PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant	PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	500.7986755371094	2	500.79854	999.582528	0.19335	9.6831E-05	0.85742	0.00042939	1.0508	0.00052622	500.7988715745258	50.358	1.2382	50.358	49.853	51.091	0					66	23	6	0	0	0	0.71898	1	19140	19140		3.9444	0.3479	1	2952599999.9999995			17400	2938	10672	10729	16702	16702					0.08271967428697735
KPTKDKEKRPL	11	Unmodified	_KPTKDKEKRPL_					0	0	0			REV__FBXO43|p.E140K|1|0.27|ENSG00000156509|chr8:100141836-100141836|C/T|missense_variant	REV__FBXO43|p.E140K|1|0.27|ENSG00000156509|chr8:100141836-100141836|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	447.27313232421875	3	447.273388	1338.79833	0.11845	5.2981E-05	-0.53811	-0.00024068	-0.41965	-0.0001877	447.27302960532325	55.684	0.20592	55.684	55.554	55.76	0					8	3	3	0	0	0	0.74191	1	21411	21411		0.40827	0	1	80459000	+		17401	16812	10673	10730	16703	16703					0.1424868382268869
KPTKGRLKTWL	11	Unmodified	_KPTKGRLKTWL_					0	0	0		ENST00000468045.5_1_2:27355724-27356007:-|nuORF	ENST00000468045.5_1_2:27355724-27356007:-|nuORF	ENST00000468045.5_1_2:27355724-27356007:-|nuORF	MSMS	HCT116MG_D190212_S3	3	664.2798461914062	2	664.414072	1326.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.726	1	44.417	43.917	44.917	-0.30927								0	0	0	0.95343	1	16726	16726		4.5289	0	1				17402	8122	10674	10731	16704	16704					0.1632559541055798
KPTKGRLKTWL	11	Unmodified	_KPTKGRLKTWL_					0	0	0		ENST00000468045.5_1_2:27355724-27356007:-|nuORF	ENST00000468045.5_1_2:27355724-27356007:-|nuORF	ENST00000468045.5_1_2:27355724-27356007:-|nuORF	MSMS	HCT116MG_D190212_S3	3	664.4120483398438	2	664.414072	1326.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.801	1	44.492	43.992	44.992	-0.30927								0	0	0	0.95772	1	16756	16756		2.2828	0.95324	1				17403	8122	10674	10731	16705	16705					0.1632559541055798
KPTKGWEERTK	11	Unmodified	_KPTKGWEERTK_					0	0	0		nc|ENSG00000164221|Q8NEF3|CCDC112;ENSG00000164221|ENST00000379611|CCDC112	nc|ENSG00000164221|Q8NEF3|CCDC112	nc|ENSG00000164221|Q8NEF3|CCDC112	MSMS	HCT116MG_D190212_S3	3	680.370849609375	2	680.372601	1358.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.2	1	39.899	39.399	40.399	-0.30137								0	0	0	0.95343	1	14916	14916		4.5289	1.5336	1				17404	4685	10675	10732	16706	16706					0.06563233891870368
KPTKIVSLNK	10	Unmodified	_KPTKIVSLNK_					0	0	0		FANCM|p.K854N|1|0.5|ENSG00000187790|chr14:45175316-45175316|G/T|missense_variant	FANCM|p.K854N|1|0.5|ENSG00000187790|chr14:45175316-45175316|G/T|missense_variant	FANCM|p.K854N|1|0.5|ENSG00000187790|chr14:45175316-45175316|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	564.35888671875	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.478	1	37.176	36.676	37.676	-0.30137								0	0	0	0.95648	1	13883	13883		3.2813	0	1				17405	9150	10676	10733	16707	16707					0.14910839845219925
KPTKIVSLNK	10	Unmodified	_KPTKIVSLNK_					0	0	0		FANCM|p.K854N|1|0.5|ENSG00000187790|chr14:45175316-45175316|G/T|missense_variant	FANCM|p.K854N|1|0.5|ENSG00000187790|chr14:45175316-45175316|G/T|missense_variant	FANCM|p.K854N|1|0.5|ENSG00000187790|chr14:45175316-45175316|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	564.3591918945312	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.517	1	54.221	53.721	54.721	-0.29587								0	0	0	0.95648	1	20659	20659		3.2813	0	1				17406	9150	10676	10733	16708	16708					0.14910839845219925
KPTKQTLKKK	10	Unmodified	_KPTKQTLKKK_					0	0	0		ENST00000263228.3_1_9:33917599-33917731:+|nuORF	ENST00000263228.3_1_9:33917599-33917731:+|nuORF	ENST00000263228.3_1_9:33917599-33917731:+|nuORF	MSMS	HCT116MG_D190212_S2	2	600.130615234375	2	600.395348	1198.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.565	1	61.423	60.923	61.923	-0.14227								0	0	0	0.96521	1	23848	23848		1.3295	0.13619	1				17407	6876	10677	10734	16709	16709					0.18470504144943334
KPTKRKRKGSS	11	Unmodified	_KPTKRKRKGSS_					0	0	0		nc|ENSG00000143624|Q68E01-4|INTS3;nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3	nc|ENSG00000143624|Q68E01-4|INTS3	nc|ENSG00000143624|Q68E01-4|INTS3	MULTI-MSMS	HCT116MG_D190212_S4	4	424.93365478515625	3	424.933477	1271.7786	0.21293	9.048E-05	-1.1791	-0.00050102	-0.96613	-0.00041054	425.2672852394259	53.08	0.67637	52.745	52.359	53.035	-0.33473					20	12	2	0	0	0	0.74191	1	19715	19715		0.84494	0.14728	1	1918500			17408	3823	10678	10735	16710	16710					0.1535835260258409
KPTKTTLIVEQ	11	Unmodified	_KPTKTTLIVEQ_					0	0	0			REV__COL20A1|p.P560Rfs*9|2|0.11|ENSG00000101203|chr20:63311925-63311925|C/-|frameshift_variant	REV__COL20A1|p.P560Rfs*9|2|0.11|ENSG00000101203|chr20:63311925-63311925|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	629.0372314453125	2	629.374278	1256.734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.878	1	16.878	16.378	17.378	0								0	0	0	0.95731	1	5709	5709		2.4985	0.84587	1		+		17409	10229	10679	10736	16711	16711					0.11590483945906271
KPTLTKASRS	10	Unmodified	_KPTLTKASRS_					0	0	0			REV__nc|ENSG00000116906|O15228-2|GNPAT	REV__nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	HCT116MG_D190212_S4	4	544.8245849609375	2	544.824755	1087.63496	0.55005	0.00029968	0.10364	5.6464E-05	0.65368	0.00035614	544.8246809215399	53.367	1.0932	53.032	52.671	53.764	-0.33473					55	20	4	0	0	0	0.8392	1	19853	19853		8.7454	5.4641	1	18999000	+		17410	11600	10680	10737	16712	16712					0.09464505771643417
KPTNPRNI	8	Unmodified	_KPTNPRNI_					0	0	0			REV__ENST00000436471.2_1_17:20384856-20385102:-|nuORF	REV__ENST00000436471.2_1_17:20384856-20385102:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2718200683594	2	470.272158	938.529764	-0.085286	-4.0108E-05	-0.076855	-3.6143E-05	-0.16214	-7.625E-05	470.27204004746613	49.774	0.81888	49.61	49.38	50.199	-0.16369					38	15	3	0	0	0	0.83066	1	19042	19042		7.9102	0.62092	1	186360000	+		17411	10901	10681	10738	16713	16713					0.05804009365908769
KPTQFPPDRRR	11	Unmodified	_KPTQFPPDRRR_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MSMS	HCT116MG_D190212_S2	2	699.391845703125	2	699.391659	1396.76877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.928	1	56.749	56.249	57.249	-0.17904								0	0	0	0.94385	1	21972	21972		9.544	0.79857	1		+		17412	11840	10682	10739	16714	16714					0.08625164597196999
KPTQFPPDRRR	11	Unmodified	_KPTQFPPDRRR_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MSMS	HCT116MG_D190212_S4	4	699.390869140625	2	699.391659	1396.76877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.085	1	48.72	48.22	49.22	-0.365								0	0	0	0.95772	1	18195	18195		2.2828	0.95324	1		+		17413	11840	10682	10739	16715	16715					0.08625164597196999
KPTRGGRA	8	Unmodified	_KPTRGGRA_					0	0	0			REV__ENSG00000182472|ENST00000328867|CAPN12	REV__ENSG00000182472|ENST00000328867|CAPN12	MSMS	HCT116MG_D190212_S3	3	421.7513427734375	2	421.751393	841.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.041	1	49.726	49.226	50.226	-0.31525								0	0	0	0.8837	1	18860	18860		4.756	0	1		+		17414	13719	10683	10740	16716	16716					0.061148733972345326
KPTRKSRT	8	Unmodified	_KPTRKSRT_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	HCT116MG_D190212_S2	2	487.2987060546875	2	487.298707	972.582862	-0.10021	-4.8834E-05	0.13058	6.363E-05	0.030363	1.4796E-05	487.29869908798713	49.774	1.599	49.61	49.33	50.929	-0.16369					56	30	2	0	0	0	0.83605	1	19250	19250		7.2892	0.56607	1	1756799999.9999998			17415	5218	10684	10741	16717	16717					0.09547387148563757
KPTRKSRT	8	Unmodified	_KPTRKSRT_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	HCT116MG_D190212_S3	3	487.29876708984375	2	487.298707	972.582862	0.078297	3.8154E-05	0.24964	0.00012165	0.32794	0.0001598	487.2987268626199	50.451	1.6716	50.136	49.76	51.432	-0.31421					75	31	4	0	0	0	0.85329	1	19157	19157		4.756	0.42677	1	148970000			17416	5218	10684	10741	16718	16718					0.09547387148563757
KPVAKIPLRR	10	Unmodified	_KPVAKIPLRR_					0	0	0		TACC2|p.M2297I|1|0.28|ENSG00000138162|chr10:122211316-122211316|G/A|missense_variant	TACC2|p.M2297I|1|0.28|ENSG00000138162|chr10:122211316-122211316|G/A|missense_variant	TACC2|p.M2297I|1|0.28|ENSG00000138162|chr10:122211316-122211316|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	589.3994750976562	2	589.398225	1176.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.944	1	41.642	41.142	42.142	-0.30257								0	0	0	0.96453	1	15610	15610		1.4819	0	1				17417	18252	10685	10742	16719	16719					0.2005764744726548
KPVDIELHQL	10	Unmodified	_KPVDIELHQL_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1;COL19A1|p.K327Rfs*36|1|0.13|ENSG00000082293|chr6:69960036-69960036|A/-|frameshift_variant;COL19A1|p.S585Afs*8|1|0.2|ENSG00000082293|chr6:70144987-70144987|A/-|frameshift_variant;COL19A1|p.G753Afs*32|1|0.15|ENSG00000082293|chr6:70156686-70156686|G/-|frameshift_variant;COL19A1|p.G807Wfs*14|1|0.34|ENSG00000082293|chr6:70165952-70165953|-/C|frameshift_variant	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MSMS	HCT116MG_D190212_S4	4	596.3401489257812	2	596.340238	1190.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.557	1	27.236	26.736	27.736	-0.32157								0	0	0	0.90892	1	9870	9870		13.906	1.6654	1				17418	1421	10686	10743	16720	16720					0.07821659085880128
KPVRTAVSK	9	Unmodified	_KPVRTAVSK_					0	0	0			REV__ENST00000495482.1_1_1:44386060-44395890:+|nuORF	REV__ENST00000495482.1_1_1:44386060-44395890:+|nuORF	MSMS	HCT116MG_D190212_S2	2	493.448974609375	2	493.311284	984.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.704	1	49.541	49.041	50.041	-0.16369								0	0	0	0.76077	1	19031	19031		16.149	0.30192	1		+		17419	11833	10687	10744	16721	16721					0.11509441951125154
KPYACQIP	8	Unmodified	_KPYACQIP_					0	0	0		ENST00000463680.5_1_9:3898613-3937138:-|nuORF;ENST00000467497.6_1_9:3855970-4118001:-|nuORF;nc|ENSG00000174332|Q8NBF1|GLIS1;GLIS1|p.H410Ifs*53|1|0.33|ENSG00000174332|chr1:53514755-53514755|G/-|frameshift_variant;nc|ENSG00000107249|Q8NEA6|GLIS3;ENSG00000174332|ENST00000628545|GLIS1;ENSG00000107249|ENST00000381971|GLIS3	ENST00000463680.5_1_9:3898613-3937138:-|nuORF	ENST00000463680.5_1_9:3898613-3937138:-|nuORF	MSMS	HCT116MG_D190212_S1	1	460.2388000488281	2	460.238938	918.463324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.154	1	31.154	30.654	31.654	0								0	0	0	0.8837	1	11453	11453		9.3474	0	1				17420	2108	10688	10745	16722	16722					0.0008305747961685483
KPYIYIQNKY	10	Unmodified	_KPYIYIQNKY_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MSMS	HCT116MG_D190212_S1	1	665.36328125	2	665.363713	1328.71287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.009	1	28.009	27.509	28.509	0								0	0	0	0.92917	1	10187	10187		9.3831	3.6513	1		+		17421	12109	10689	10746	16723	16723					0.061665186370191805
KQCPQSIHP	9	Carbamidomethyl (C)	_KQC(Carbamidomethyl (C))PQSIHP_	KQC(1)PQSIHP		KQC(40)PQSIHP		0	1	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MSMS	HCT116MG_D190212_S2	2	365.5186462402344	3	365.518564	1093.53386	-0.029122	-1.0645E-05	-0.29748	-0.00010873	-0.3266	-0.00011938	365.51841667553487	25.978	0.57092	25.609	25.291	25.862	-0.36914					15	10	2	0	0	0	0.20983	1	9433	9433		40.239	16.449	1	9334000	+		17422	13212	10690	10747	16724	16724	55				-0.009162692027075536
KQDEPIDL	8	Unmodified	_KQDEPIDL_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant;CCT6A|p.Y250Tfs*11|2|0.27|ENSG00000146731|chr7:56058378-56058378|T/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MSMS	HCT116MG_D190212_S1	1	479.24798583984375	2	479.248015	956.481476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.14	1	38.14	37.64	38.64	0								0	0	0	0.071193	1	14271	14271		88.904	7.0134	1				17423	3958	10691	10748	16725	16725					0.001494709353323742
KQDEPIDL	8	Unmodified	_KQDEPIDL_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant;CCT6A|p.Y250Tfs*11|2|0.27|ENSG00000146731|chr7:56058378-56058378|T/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S2	2	479.24822998046875	2	479.248015	956.481476	0.042302	2.0273E-05	0.34689	0.00016625	0.3892	0.00018652	479.24813433789615	38.182	0.31048	38.089	37.908	38.219	-0.09301					8	5	2	0	0	0	0.057078	1	14346	14346		115.69	15.893	1	21188000			17424	3958	10691	10748	16726	16726					0.001494709353323742
KQDEPIDLF	9	Unmodified	_KQDEPIDLF_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant;CCT6A|p.Y250Tfs*11|2|0.27|ENSG00000146731|chr7:56058378-56058378|T/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MSMS	HCT116MG_D190212_S1	1	552.7826538085938	2	552.782222	1103.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.555	1	52.555	52.055	53.055	0								0	0	0	0.44802	1	20105	20105		31.268	7.2478	1				17425	3958	10692	10749	16727	16727					0.0022571551517103217
KQDEPIDLF	9	Unmodified	_KQDEPIDLF_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF;CCT6A|p.I274*|1|0.21|ENSG00000146731|chr7:56058450-56058450|A/-|frameshift_variant;CCT6A|p.Y250Tfs*11|2|0.27|ENSG00000146731|chr7:56058378-56058378|T/-|frameshift_variant	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S2	2	552.7815551757812	2	552.782222	1103.54989	0.40305	0.0002228	-1.3733	-0.00075914	-0.97026	-0.00053634	552.782006828782	52.691	0.31013	52.503	52.347	52.657	-0.18725					13	5	3	0	0	0	0.053544	1	20251	20251		72.968	34.792	1	22010000			17426	3958	10692	10749	16728	16728					0.0022571551517103217
KQDETQTKI	9	Unmodified	_KQDETQTKI_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;CTNNA1|p.R884Q|1|0.35|ENSG00000044115|chr5:138934019-138934019|G/A|missense_variant;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	546.7657470703125	2	545.790578	1089.5666	0.47266	0.00025797	0.15137	8.2619E-05	0.62403	0.00034059	545.7909063514111	19.312	0.20864	18.942	18.836	19.044	-0.3695					5	3	2	0	0	0	0.31258	1	6693	6693		29.437	13.288	1	3622200			17427	1019	10693	10750	16729	16729					0.0254021640114388
KQDMARQL	8	Unmodified	_KQDMARQL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;CON__P08729;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__Q6KB66-1;ENST00000466011.1_1_12:52565184-52579482:-|nuORF;nc|ENSG00000167767|Q6KB66-3|KRT80;ENSG00000167767|ENST00000394815|KRT80;nc|ENSG00000167767|Q6KB66-2|KRT80;CON__Q0VBK2;KRT7|p.R373C|1|0.25|ENSG00000135480|chr12:52245544-52245544|C/T|missense_variant;CON__H-INV:HIT000292931;ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931;ENSG00000161849|ENST00000257951|KRT84	nc|ENSG00000170421|P05787-2|KRT8	MULTI-SECPEP	HCT116MG_D190212_S1	1	494.8064880371094	2	495.263476	988.512399	0.34929	0.00017299	-0.1191	-5.8985E-05	0.23019	0.000114	495.26348608250936	22.611	0.20829	22.611	22.481	22.689	0					5	3	2	0	0	0	0.23854	1	8021	8021		29.082	7.3349	1	4906500		+	17428	558;541;581	10694	10751	16730	16730					0.017683457685848225
KQDMARQL	8	Unmodified	_KQDMARQL_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;CON__P08729;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__Q6KB66-1;ENST00000466011.1_1_12:52565184-52579482:-|nuORF;nc|ENSG00000167767|Q6KB66-3|KRT80;ENSG00000167767|ENST00000394815|KRT80;nc|ENSG00000167767|Q6KB66-2|KRT80;CON__Q0VBK2;KRT7|p.R373C|1|0.25|ENSG00000135480|chr12:52245544-52245544|C/T|missense_variant;CON__H-INV:HIT000292931;ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931;ENSG00000161849|ENST00000257951|KRT84	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	495.2635803222656	2	495.263476	988.512399	0.27708	0.00013723	0.38241	0.00018939	0.65949	0.00032662	495.26375937059737	23.23	0.26051	22.845	22.674	22.934	-0.3852					7	4	2	0	0	0	0.068362	1	8286	8286		103.75	55.402	1	20238000		+	17429	558;541;581	10694	10751	16731	16731					0.017683457685848225
KQEGIQFSHPG	11	Unmodified	_KQEGIQFSHPG_					0	0	0		ENST00000593980.1_1_19:46706719-46706911:+|nuORF	ENST00000593980.1_1_19:46706719-46706911:+|nuORF	ENST00000593980.1_1_19:46706719-46706911:+|nuORF	MSMS	HCT116MG_D190212_S4	4	614.3115234375	2	614.309469	1226.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.883	1	45.511	45.011	46.011	-0.37206								0	0	0	0.92285	1	16942	16942		11.495	0	1				17430	9054	10695	10752	16732	16732					0.00014727386610502435
KQEPGVRSAY	10	Unmodified	_KQEPGVRSAY_					0	0	0			REV__ENST00000380443.5_1_20:2843179-2847217:+|nuORF	REV__ENST00000380443.5_1_20:2843179-2847217:+|nuORF	MSMS	HCT116MG_D190212_S2	2	567.7989501953125	2	567.798737	1133.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.397	1	37.294	36.794	37.794	-0.10318								0	0	0	0.89062	1	14016	14016		17.113	2.2746	1		+		17431	14282	10696	10753	16733	16733					0.021473423578981965
KQESLKDLP	9	Unmodified	_KQESLKDLP_					0	0	0			REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	353.5355224609375	3	353.201118	1056.58152	-0.065705	-2.3207E-05	0.13356	4.7175E-05	0.067858	2.3968E-05	353.2010244383701	24.736	0.62446	24.652	24.237	24.861	-0.083694					25	11	3	0	0	0	0.30117	1	8814	8814		22.658	3.9369	1	6861100	+		17432	13958	10697	10754	16734	16734					0.0554970826913177
KQFEGTVEI	9	Unmodified	_KQFEGTVEI_					0	0	0		BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.N1544Tfs*24|1|0.22|ENSG00000139618|chr13:32338982-32338982|A/-|frameshift_variant;BRCA2|p.N1642Mfs*2|1|0.08|ENSG00000139618|chr13:32339277-32339277|A/-|frameshift_variant;BRCA2|p.K1691Nfs*15|1|0.11|ENSG00000139618|chr13:32339422-32339422|A/-|frameshift_variant;BRCA2|p.N1784Tfs*7|1|0.4|ENSG00000139618|chr13:32339700-32339700|A/-|frameshift_variant;BRCA2|p.T2515Nfs*24|1|0.35|ENSG00000139618|chr13:32356530-32356531|-/A|frameshift_variant;BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant	BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	525.777099609375	2	525.776939	1049.53933	0.33003	0.00017352	-0.32774	-0.00017232	0.0022975	1.208E-06	525.776633202466	38.826	0.25985	38.742	38.597	38.857	-0.084621					7	4	2	0	0	0	0.023778	2	14616	14584;14616		92.653	31.296	1	14675000			17433	275	10698	10755	16735;16736	16736					0.01653732860791024
KQFEKQVEL	9	Unmodified	_KQFEKQVEL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	574.8196411132812	2	574.819138	1147.62372	0.48444	0.00027847	0.14728	8.4658E-05	0.63172	0.00036313	574.8191032701567	30.554	0.26004	30.554	30.399	30.659	0					12	4	4	0	0	0	0.0047539	1	11205	11205		139.78	59.106	1	7428200			17434	741	10699	10756	16737	16737					0.0558168367754206
KQFEKQVEL	9	Unmodified	_KQFEKQVEL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	383.5486145019531	3	383.548518	1147.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.615	1	30.615	30.115	31.115	0								0	0	0	0.67173	1	11235	11235		14.405	0	1				17435	741	10699	10756	16738	16738					0.0558168367754206
KQFEKQVEL	9	Unmodified	_KQFEKQVEL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	574.8193359375	2	574.819138	1147.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.915	1	30.648	30.148	31.148	-0.26704								0	0	0	0.0047254	1	11384	11384		117.76	57.687	1				17436	741	10699	10756	16739	16739					0.0558168367754206
KQFIRKAIKR	10	Unmodified	_KQFIRKAIKR_					0	0	0			REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	REV__tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	429.9505615234375	3	429.950579	1286.82991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.083	1	15.92	15.42	16.42	-0.16364								0	0	0	0.97054	1	5237	5237		0.13989	0	1		+		17437	17935	10700	10757	16740	16740					0.19796721367288228
KQGAFGSI	8	Unmodified	_KQGAFGSI_					0	0	0		nc|ENSG00000196115|Q6NVV9-3|ADAM5;nc|ENSG00000196115|Q6NVV9-5|ADAM5;nc|ENSG00000196115|Q6NVV9-4|ADAM5;nc|ENSG00000196115|Q6NVV9-6|ADAM5;nc|ENSG00000196115|Q6NVV9-7|ADAM5;nc|ENSG00000196115|Q6NVV9|ADAM5	nc|ENSG00000196115|Q6NVV9-3|ADAM5	nc|ENSG00000196115|Q6NVV9-3|ADAM5	MULTI-MSMS	HCT116MG_D190212_S2	2	404.2214050292969	2	404.221603	806.428653	-0.12421	-5.0209E-05	-0.012478	-5.044E-06	-0.13669	-5.5253E-05	404.22149044022194	34.12	0.41523	33.945	33.812	34.227	-0.17512					15	7	3	0	0	0	0.73076	1	12689	12689		19.439	1.304	1	74719000			17438	9593	10701	10758	16741	16741					0.017695576632036136
KQHGVNVSV	9	Unmodified	_KQHGVNVSV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	HCT116MG_D190212_S2	2	484.24609375	2	484.269616	966.524678	0.21894	0.00010602	-2.1076	-0.0010206	-1.8886	-0.00091461	484.26822441279916	24.645	0.41683	24.265	24.082	24.499	-0.38003					11	7	3	0	0	0	0.023001	1	8910	8910		85.642	33.373	1	39682000			17439	3820	10702	10759	16742	16742					0.04007705503283887
KQHGVNVSV	9	Unmodified	_KQHGVNVSV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MATCH	HCT116MG_D190212_S1	1		2	484.269616	966.524678	0.31323	0.00015169	-0.36667	-0.00017757	-0.053437	-2.5878E-05	484.26940968423895	24.246	0.20974	24.246	24.098	24.307	0	-0.0095739	0.00068039	NaN	85.642	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2529200			17440	3820	10702	10759							0.04007705503283887
KQHILLFSKK	10	Unmodified	_KQHILLFSKK_					0	0	0			REV__ENST00000407096.6_1_1:223305936-223316570:-|nuORF	REV__ENST00000407096.6_1_1:223305936-223316570:-|nuORF	MSMS	HCT116MG_D190212_S1	1	620.9526977539062	2	621.390065	1240.76558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.862	1	41.862	41.362	42.362	0								0	0	0	0.94746	1	15774	15774		5.2969	0.39987	1		+		17441	15418	10703	10760	16743	16743					0.1548252149052587
KQHLRVHRQRQ	11	Unmodified	_KQHLRVHRQRQ_					0	0	0		nc|ENSG00000168813|Q8TCN5-2|ZNF507;ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant;ENSG00000168813|ENST00000355898|ZNF507	nc|ENSG00000168813|Q8TCN5-2|ZNF507	nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	HCT116MG_D190212_S1	1	496.25189208984375	3	495.958908	1484.85489	0.46458	0.00023041	0.096705	4.7962E-05	0.56128	0.00027837	495.9588768101051	54.222	1.8384	54.222	53.359	55.197	0					133	35	6	0	0	0	0.74191	1	20958	20958		0.08335	0	1	510920000			17442	9540	10704	10761	16744	16744					0.13186169222581157
KQHLRVHRQRQ	11	Unmodified	_KQHLRVHRQRQ_					0	0	0		nc|ENSG00000168813|Q8TCN5-2|ZNF507;ZNF507|p.L875Sfs*7|1|0.15|ENSG00000168813|chr19:32382841-32382842|-/T|frameshift_variant;ENSG00000168813|ENST00000355898|ZNF507	nc|ENSG00000168813|Q8TCN5-2|ZNF507	nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	HCT116MG_D190212_S2	2	495.9585266113281	3	495.958908	1484.85489	0.34039	0.00016882	0.17886	8.8705E-05	0.51925	0.00025753	495.9588952868974	54.881	1.792	54.694	53.689	55.481	-0.18797					100	34	4	0	0	0	0.74191	1	21061	21061		0.40827	0.32491	1	178030000			17443	9540	10704	10761	16745	16745					0.13186169222581157
KQHSGEFTV	9	Unmodified	_KQHSGEFTV_					0	0	0		nc|ENSG00000185480|Q9NWS1-4|PARPBP;nc|ENSG00000185480|Q9NWS1-3|PARPBP;ENST00000541668.5_1_12:102514215-102548625:+|nuORF;ENST00000392914.3_1_12:102517666-102545686:+|nuORF;PARPBP|p.G278Vfs*6|1|0.35|ENSG00000185480|chr12:102175490-102175490|G/-|frameshift_variant;nc|ENSG00000185480|Q9NWS1-6|PARPBP;nc|ENSG00000185480|Q9NWS1-7|PARPBP;PARPBP|p.I420Lfs*3|1|0.36|ENSG00000185480|chr12:102182616-102182616|A/-|frameshift_variant;PARPBP|p.N533Mfs*19|1|0.15|ENSG00000185480|chr12:102196145-102196145|A/-|frameshift_variant;ENSG00000185480|ENST00000327680|PARPBP	nc|ENSG00000185480|Q9NWS1-4|PARPBP	nc|ENSG00000185480|Q9NWS1-4|PARPBP	MSMS	HCT116MG_D190212_S1	1	516.7593383789062	2	516.759081	1031.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.113	1	28.113	27.613	28.613	0								0	0	0	0.090763	1	10229	10229		58.679	0	1				17444	5831	10705	10762	16746	16746					-0.010883045962373217
KQIDQFLVV	9	Unmodified	_KQIDQFLVV_					0	0	0		nc|ENSG00000182979|Q13330-2|MTA1;MTA1|p.R546Afs*8|1|0.13|ENSG00000182979|chr14:105466433-105466433|C/-|frameshift_variant;MTA1|p.T578Pfs*18|1|0.07|ENSG00000182979|chr14:105466528-105466528|C/-|frameshift_variant;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1	nc|ENSG00000182979|Q13330-2|MTA1	nc|ENSG00000182979|Q13330-2|MTA1	MULTI-MSMS	HCT116MG_D190212_S2	2	545.3178100585938	2	545.318774	1088.623	0.67825	0.00036987	-1.1679	-0.00063686	-0.48962	-0.000267	545.3180139895111	52.303	0.36097	52.116	51.883	52.244	-0.18725					10	6	3	0	0	0	0.01389	1	20101	20101		103.75	43.674	1	50981000			17445	5698	10706	10763	16747	16747					0.08222889028479585
KQIKEIKEV	9	Unmodified	_KQIKEIKEV_					0	0	0		ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	557.7609252929688	2	557.845156	1113.67576	0.60411	0.000337	-0.49093	-0.00027386	0.11318	6.3138E-05	557.8448307542649	20.669	0.20816	20.669	20.54	20.748	0					5	3	2	0	0	0	0.0060369	1	7230	7230		128.57	48.977	1	3742600			17446	1481	10707	10764	16748	16748					0.12346847091248492
KQIKEIKEV	9	Unmodified	_KQIKEIKEV_					0	0	0		ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	557.8453369140625	2	557.845156	1113.67576	0.28543	0.00015923	0.33883	0.00018901	0.62426	0.00034824	557.8452410517059	21.427	0.20725	21.044	20.91	21.117	-0.38288					7	3	3	0	0	0	0.0064513	1	7566	7566		124.95	45.357	1	14826000			17447	1481	10707	10764	16749	16749					0.12346847091248492
KQIQSRESL	9	Unmodified	_KQIQSRESL_					0	0	0			REV__L1MB7_dup19902|chr17:40875061-40875287:-|3.360602254003264|0.3417949504753551|3.3|474.0|9|3|sense	REV__L1MB7_dup19902|chr17:40875061-40875287:-|3.360602254003264|0.3417949504753551|3.3|474.0|9|3|sense	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.7830200195312	2	544.806562	1087.59857	0.42949	0.00023399	1.1239	0.00061233	1.5534	0.00084632	544.8069349759642	16.259	0.15689	15.924	15.846	16.003	-0.33451					4	2	2	0	0	0	0.15894	1	5441	5441		46.021	9.8939	1	1574200	+		17448	16943	10708	10765	16750	16750					0.05827628874953916
KQIRKRVVRVF	11	Unmodified	_KQIRKRVVRVF_					0	0	0		nc|ENSG00000181109|Q8NH57|OR52P1	nc|ENSG00000181109|Q8NH57|OR52P1	nc|ENSG00000181109|Q8NH57|OR52P1	MSMS	HCT116MG_D190212_S3	3	476.9800109863281	3	476.98065	1427.92012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.84	1	47.525	47.025	48.025	-0.31525								0	0	0	0.9619	1	17977	17977		0.094841	0	1				17449	9566	10709	10766	16751	16751					0.2232777069571057
KQKALNRRK	9	Unmodified	_KQKALNRRK_					0	0	0			REV__ENST00000488014.5_1_1:84386258-84403687:-|nuORF	REV__ENST00000488014.5_1_1:84386258-84403687:-|nuORF	MSMS	HCT116MG_D190212_S4	4	381.2479248046875	3	381.247396	1140.72036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.637	1	48.27	47.77	48.77	-0.36728								0	0	0	0.76998	1	18019	18019		0.96228	0.0979	1		+		17450	16011	10710	10767	16752	16752					0.15562715747978473
KQKKKITKL	9	Unmodified	_KQKKKITKL_					0	0	0			REV__nc|ENSG00000186462|Q9ULW6-2|NAP1L2	REV__nc|ENSG00000186462|Q9ULW6-2|NAP1L2	MSMS	HCT116MG_D190212_S2	2	372.2588806152344	3	372.260531	1113.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.69	1	37.587	37.087	38.087	-0.10318								0	0	0	0.76995	1	14136	14136		1.0715	0	1		+		17451	13884	10711	10768	16753	16753					0.20743422978830495
KQKLKKLSKIL	11	Unmodified	_KQKLKKLSKIL_					0	0	0			REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	663.9638061523438	2	663.963397	1325.91224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.366	1	45.366	44.866	45.866	0								0	0	0	0.96208	1	17187	17187		0	0	1		+		17452	17807	10712	10769	16754	16754					0.2623219865561168
KQKRGAFLKR	10	Unmodified	_KQKRGAFLKR_					0	0	0		ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	MULTI-MSMS	HCT116MG_D190212_S1	1	616.39013671875	2	616.390931	1230.76731	0.42394	0.00026131	-0.37094	-0.00022864	0.053006	3.2672E-05	616.3905591629589	60.465	0.41428	60.465	60.284	60.698	0					11	7	2	0	0	0	0.88823	1	23313	23313		1.4819	0	1	33561000			17453	2958	10713	10770	16755	16755					0.16115575299090779
KQKRKKRLEIL	11	Unmodified	_KQKRKKRLEIL_					0	0	0			REV__ANKRD2|p.D214Afs*13|1|0.1|ENSG00000165887|chr10:97581319-97581322|GACT/-|frameshift_variant	REV__ANKRD2|p.D214Afs*13|1|0.1|ENSG00000165887|chr10:97581319-97581322|GACT/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	720.4818725585938	2	720.480277	1438.946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.488	1	59.211	58.711	59.711	-0.27731								0	0	0	0.96149	1	22387	22387		0.30703	0	1		+		17454	9942	10714	10771	16756	16756					0.24408620147346483
KQLKLLFLS	9	Unmodified	_KQLKLLFLS_					0	0	0		nc|ENSG00000126500|Q9NZU1-1|FLRT1;ENSG00000126500|ENST00000682287|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	MSMS	HCT116MG_D190212_S1	1	545.3538208007812	2	545.35516	1088.69577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.642	1	50.642	50.142	51.142	0								0	0	0	0.76902	1	19329	19329		4.3292	0	1				17455	2939	10715	10772	16757	16757					0.1549664282190406
KQLLLWLFH	9	Unmodified	_KQLLLWLFH_					0	0	0			REV__ENST00000602498.1_1_6:30271924-30293885:-|nuORF	REV__ENST00000602498.1_1_6:30271924-30293885:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	599.803466796875	2	599.360776	1196.707	0.37086	0.00022228	0.063325	3.7955E-05	0.43418	0.00026023	599.3607860440825	51.093	0.25837	51.093	50.988	51.246	0					7	4	2	0	0	0	0.26422	1	19569	19569		3.9444	3.9444	1	17408000	+		17456	16754	10716	10773	16758	16758					0.11651464916008081
KQMDSNWTL	9	Unmodified	_KQMDSNWTL_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1;XPNPEP1|p.A126T|1|0.41|ENSG00000108039|chr10:109891761-109891761|C/T|missense_variant;ENST00000475123.1_1_10:111651462-111667565:-|nuORF	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-MSMS	HCT116MG_D190212_S2	2	561.7661743164062	2	561.766049	1121.51754	0.67044	0.00037663	0.019739	1.1089E-05	0.69018	0.00038772	561.7662577899373	44.646	0.47008	44.561	44.428	44.899	-0.084797					11	8	2	0	0	0	0.066823	1	16984	16984		66.457	18.708	1	39001000			17457	2144	10717	10774	16759	16759					-0.03835395159467225
KQQAPPPPP	9	Unmodified	_KQQAPPPPP_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2684326171875	2	480.269084	958.523616	0.10649	5.1146E-05	-0.74331	-0.00035699	-0.63681	-0.00030584	480.26864316020186	25.582	0.31174	25.213	25.082	25.394	-0.36914					7	5	2	0	0	0	0.13706	1	9259	9259		50.855	10.905	1	6437000			17458	2881	10718	10775	16760	16760					0.042694911343687636
KQQASQVLV	9	Unmodified	_KQQASQVLV_					0	0	0		ENSG00000184500|ENST00000394236|PROS1;RUNX1-PROS1|2|fusion;RUNX1-PROS1|1|fusion	ENSG00000184500|ENST00000394236|PROS1;RUNX1-PROS1|2|fusion	ENSG00000184500|ENST00000394236|PROS1	MULTI-MSMS	HCT116MG_D190212_S1	1	500.7926025390625	2	500.792924	999.571294	0.39649	0.00019856	-0.18916	-9.4732E-05	0.20732	0.00010383	500.79281402214355	30.321	0.35693	30.321	30.146	30.503	0					9	6	2	0	0	0	0.027442	1	11129	11129		88.954	19.849	1	6585600			17459	5774;18134	10719	10776	16761	16761					0.07149145334574314
KQQASQVLV	9	Unmodified	_KQQASQVLV_					0	0	0		ENSG00000184500|ENST00000394236|PROS1;RUNX1-PROS1|2|fusion;RUNX1-PROS1|1|fusion	ENSG00000184500|ENST00000394236|PROS1;RUNX1-PROS1|2|fusion	ENSG00000184500|ENST00000394236|PROS1	MULTI-SECPEP	HCT116MG_D190212_S2	2	500.25921630859375	2	500.792924	999.571294	0.3454	0.00017297	-0.089884	-4.5013E-05	0.25551	0.00012796	500.79285723909965	30.904	0.41414	30.637	30.456	30.87	-0.26704					16	7	3	0	0	0	0.026974	1	11377	11377		100.37	25.949	1	67802000			17460	5774;18134	10719	10776	16762	16762					0.07149145334574314
KQQASQVLV	9	Unmodified	_KQQASQVLV_					0	0	0		ENSG00000184500|ENST00000394236|PROS1;RUNX1-PROS1|2|fusion;RUNX1-PROS1|1|fusion	ENSG00000184500|ENST00000394236|PROS1;RUNX1-PROS1|2|fusion	ENSG00000184500|ENST00000394236|PROS1	MULTI-MSMS	HCT116MG_D190212_S3	3	500.79302978515625	2	500.792924	999.571294	0.35444	0.0001775	-0.27502	-0.00013773	0.079418	3.9772E-05	500.79279867938857	30.995	0.31282	30.735	30.552	30.865	-0.26071					14	5	4	0	0	0	0.063511	1	11310	11310		68.081	3.8444	1	13388000			17461	5774;18134	10719	10776	16763	16763					0.07149145334574314
KQQDQLTER	9	Unmodified	_KQQDQLTER_					0	0	0		nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2;nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2	nc|ENSG00000101977|P10911|MCF2	nc|ENSG00000101977|P10911|MCF2	MULTI-MSMS	HCT116MG_D190212_S2	2	573.2994384765625	2	573.299101	1144.58365	0.33563	0.00019241	-0.11082	-6.3531E-05	0.22481	0.00012888	573.2991610202436	16.52	0.20811	16.178	16.048	16.256	-0.34183					5	3	2	0	0	0	0.43843	1	5592	5592		20.415	0.97554	1	4748700			17462	1818	10720	10777	16764	16764					0.01714137006956662
KQQDQLTER	9	Unmodified	_KQQDQLTER_					0	0	0		nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2;nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2	nc|ENSG00000101977|P10911|MCF2	nc|ENSG00000101977|P10911|MCF2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	573.299101	1144.58365	0.34163	0.00019586	0.26521	0.00015204	0.60683	0.0003479	573.29954601426	16.135	0.26053	16.135	15.9	16.161	0	-0.021759	0.00038081	NaN	20.415	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1841600			17463	1818	10720	10777							0.01714137006956662
KQQDQLTER	9	Unmodified	_KQQDQLTER_					0	0	0		nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2;nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2	nc|ENSG00000101977|P10911|MCF2	nc|ENSG00000101977|P10911|MCF2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	573.299101	1144.58365	0.33563	0.00019241	-0.11082	-6.3531E-05	0.22481	0.00012888	573.2991610202436	16.52	0.20811	16.178	16.048	16.256	-0.34183	0.021759	-5.0334E-05	NaN	20.415	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4748700			17464	1818	10720	10777							0.01714137006956662
KQQKKRRSPL	10	Unmodified	_KQQKKRRSPL_					0	0	0			REV__PALB2|p.N280Tfs*8|2|0.26|ENSG00000083093|chr16:23635707-23635707|T/-|frameshift_variant	REV__PALB2|p.N280Tfs*8|2|0.26|ENSG00000083093|chr16:23635707-23635707|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	634.8971557617188	2	634.89912	1267.78369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.284	1	50.972	50.472	51.472	-0.31166								0	0	0	0.96377	1	19360	19360		1.6526	0.17072	1		+		17465	10895	10721	10778	16765	16765					0.16050656465222346
KQRALDRYKL	10	Unmodified	_KQRALDRYKL_					0	0	0			REV__BRDT|p.D909Y|1|0.08|ENSG00000137948|chr1:92005249-92005249|G/T|missense_variant	REV__BRDT|p.D909Y|1|0.08|ENSG00000137948|chr1:92005249-92005249|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	645.8876953125	2	645.885678	1289.7568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.824	1	46.824	46.324	47.324	0								0	0	0	0.95507	1	17776	17776		3.5965	0.60125	1		+		17466	10053	10722	10779	16766	16766					0.12351547854018463
KQTALVELVK	10	Unmodified	_KQTALVELVK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	564.853271484375	2	564.852981	1127.69141	0.33764	0.00019072	-0.2385	-0.00013472	0.099135	5.5997E-05	564.8527240944292	36.964	0.20771	36.964	36.886	37.094	0					6	3	2	0	0	0	0.026695	1	13830	13830		108.26	48.894	1	9043400		+	17467	554	10723	10780	16767	16767					0.13267133608337645
KQTALVELVK	10	Unmodified	_KQTALVELVK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-SECPEP	HCT116MG_D190212_S3	3	565.2835083007812	2	564.852981	1127.69141	0.45666	0.00025794	-1.132	-0.00063942	-0.67535	-0.00038147	564.8526511960905	37.219	0.20808	36.917	36.769	36.977	-0.30137					5	3	2	0	0	0	0.27227	1	13801	13801		26.268	9.1552	1	6058600		+	17468	554	10723	10780	16768	16768					0.13267133608337645
KQTALVELVK	10	Unmodified	_KQTALVELVK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	564.853271484375	2	564.852981	1127.69141	0.24822	0.00014021	-0.55633	-0.00031425	-0.30811	-0.00017404	564.853026183335	37.356	0.20496	36.972	36.823	37.028	-0.3839					7	3	3	0	0	0	0.014769	1	13725	13725		132.57	50.037	1	5673800		+	17469	554	10723	10780	16769	16769					0.13267133608337645
KQVEEIFNL	9	Unmodified	_KQVEEIFNL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	HCT116MG_D190212_S2	2	559.7739868164062	2	560.305864	1118.59717	0.54161	0.00030347	-0.053512	-2.9983E-05	0.4881	0.00027348	560.3057966383042	52.457	0.5167	52.27	52.038	52.555	-0.18725					29	9	4	0	0	0	0.025027	1	20140	20140		103.75	14.794	1	133210000			17470	6638	10724	10781	16770	16770					0.04261994786179457
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	494.787353515625	2	494.787307	987.560061	0.23169	0.00011464	0.10765	5.3262E-05	0.33933	0.0001679	494.78729080991934	42.87	0.26104	42.87	42.69	42.951	0					12	4	4	0	0	0	0.0094709	1	16184	16184		114.65	38.888	1	35917000			17471	656	10725	10782	16771	16771					0.06578323240432837
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7873229980469	2	494.787307	987.560061	0.46679	0.00023096	0.366	0.00018109	0.83279	0.00041206	494.78747010607964	42.837	0.3098	42.767	42.585	42.895	-0.069984					8	5	2	0	0	0	0.0094709	1	16228	16228		114.65	32.759	1	77879000			17472	656	10725	10782	16772	16772					0.06578323240432837
KQWSRLLKKAR	11	Unmodified	_KQWSRLLKKAR_					0	0	0			REV__MED26|p.D308Vfs*113|1|0.45|ENSG00000105085|chr19:16576907-16576907|T/-|frameshift_variant	REV__MED26|p.D308Vfs*113|1|0.45|ENSG00000105085|chr19:16576907-16576907|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	471.96636962890625	3	471.964889	1412.87284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.414	1	11.414	10.914	11.914	0								0	0	0	0.96192	1	3590	3590		0.08335	0.08335	1		+		17473	11234	10726	10783	16773	16773					0.18291491424724882
KQYGNEVFL	9	Unmodified	_KQYGNEVFL_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S1	1	549.2850341796875	2	549.284931	1096.55531	0.40149	0.00022053	0.040984	2.2512E-05	0.44247	0.00024304	549.2850753014275	44.496	0.42528	44.496	44.195	44.621	0					13	7	3	0	0	0	0.012168	1	16838	16838		108	19.093	1	21280000			17474	4280	10727	10784	16774	16774					0.010894390976773138
KQYGNEVFL	9	Unmodified	_KQYGNEVFL_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S2	2	549.28515625	2	549.284931	1096.55531	0.4023	0.00022098	0.45566	0.00025028	0.85795	0.00047126	549.2851564239754	44.384	0.36707	44.3	44.115	44.482	-0.084797					15	6	3	0	0	0	0.020181	1	16863	16863		96.285	7.3812	1	49314000			17475	4280	10727	10784	16775	16775					0.010894390976773138
KRAFVHWY	8	Unmodified	_KRAFVHWY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90016856-90017168:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S2	2	369.5342712402344	3	369.534654	1105.58213	-0.24514	-9.0587E-05	-0.53105	-0.00019624	-0.77619	-0.00028683	369.5344203081315	35.256	0.20646	35.113	34.984	35.19	-0.14245					5	3	2	0	0	0	0.40466	1	13171	13171		39.957	5.8549	1	42345000			17476	1325	10728	10785	16776	16776					0.03356592499517319
KRASVFVKL	9	Unmodified	_KRASVFVKL_					0	0	0		ENST00000495652.1_1_22:41231562-41231847:-|nuORF;ENST00000456632.1_1_X:92543289-92543514:-|nuORF;nc|ENSG00000232150|Q8IZP2|ST13P4;ST13|p.G306Efs*50|1|0.18|ENSG00000100380|chr22:40827160-40827160|C/-|frameshift_variant;nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	ENST00000495652.1_1_22:41231562-41231847:-|nuORF	ENST00000495652.1_1_22:41231562-41231847:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	524.3375854492188	2	524.337301	1046.66005	0.52318	0.00027432	0.14259	7.4766E-05	0.66577	0.00034909	524.3372919940672	33.753	0.20839	33.56	33.482	33.691	-0.19297					8	3	3	0	0	0	0.082877	1	12558	12558		61.602	13.256	1	33830000			17477	1702	10729	10786	16777	16777					0.13858605364907817
KRCAYVYKA	9	Unmodified	_KRCAYVYKA_					0	0	0		ENST00000329092.12_1_3:197677808-197679492:+|nuORF;ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF	ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENST00000329092.12_1_3:197677808-197679492:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	551.7988891601562	2	551.297319	1100.58008	0.35653	0.00019656	0.33543	0.00018492	0.69196	0.00038148	551.2974393268033	21.064	0.26056	20.681	20.546	20.807	-0.38288					10	4	3	0	0	0	0.32155	1	7405	7405		37.974	27.9	1	18624000			17478	5690	10730	10787	16778	16778					0.03381795699374379
KRCAYVYKA	9	Unmodified	_KRCAYVYKA_					0	0	0		ENST00000329092.12_1_3:197677808-197679492:+|nuORF;ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF	ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENST00000329092.12_1_3:197677808-197679492:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	367.8672180175781	3	367.867305	1100.58008	-0.24025	-8.838E-05	0.045288	1.666E-05	-0.19496	-7.172E-05	367.86735447600233	21.06	0.26056	20.677	20.546	20.807	-0.38288					7	4	2	0	0	0	0.32155	1	7417	7417		28.495	17	1	21718000			17479	5690	10730	10787	16779	16779					0.03381795699374379
KRCAYVYKA	9	Unmodified	_KRCAYVYKA_					0	0	0		ENST00000329092.12_1_3:197677808-197679492:+|nuORF;ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF	ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENST00000329092.12_1_3:197677808-197679492:+|nuORF	MSMS	HCT116MG_D190212_S3	3	367.86712646484375	3	367.867305	1100.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.866	1	19.916	19.416	20.416	0.049639								0	0	0	0.76592	1	6838	6838		15.248	7.6395	1				17480	5690	10730	10787	16780	16780					0.03381795699374379
KRCCHCCLL	9	Unmodified	_KRCCHCCLL_					0	0	0		nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;nc|ENSG00000077942|P23142-4|FBLN1;ENSG00000077942|ENST00000327858|FBLN1;CON__ENSEMBL:ENSBTAP00000016046	nc|ENSG00000077942|P23142-2|FBLN1	nc|ENSG00000077942|P23142-2|FBLN1	MSMS	HCT116MG_D190212_S4	4	360.2064514160156	3	360.164082	1077.47042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.098	1	47.729	47.229	48.229	-0.36907								0	0	0	0.7689	1	17802	17802		2.7352	0	1			+	17481	538	10731	10788	16781	16781					-0.06521992507464347
KRCHKMKV	8	Unmodified	_KRCHKMKV_					0	0	0			REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	MSMS	HCT116MG_D190212_S2	2	515.291748046875	2	515.294056	1028.57356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.388	1	32.158	31.658	32.658	-0.23009								0	0	0	0.81076	1	11982	11982		21.747	0.15649	1		+		17482	14667	10732	10789	16782	16782					0.06041579267025554
KRDGTVLRLQQ	11	Unmodified	_KRDGTVLRLQQ_					0	0	0		nc|ENSG00000100483|Q9H867-3|VCPKMT;ENST00000484763.1_1_14:50583003-50583270:-|nuORF;nc|ENSG00000100483|Q9H867-1|VCPKMT;nc|ENSG00000100483|Q9H867-5|VCPKMT;ENSG00000100483|ENST00000395860|VCPKMT	nc|ENSG00000100483|Q9H867-3|VCPKMT	nc|ENSG00000100483|Q9H867-3|VCPKMT	MULTI-MSMS	HCT116MG_D190212_S2	2	657.3857421875	2	657.386042	1312.75753	0.46617	0.00030645	-0.515	-0.00033856	-0.048832	-3.2101E-05	657.385657582362	53.387	1.806	53.198	51.83	53.636	-0.18922					59	34	2	0	0	0	0.74191	1	20457	20457		2.4985	0.59211	1	27487000			17483	1712	10733	10790	16783	16783					0.11366342503083615
KREELKKKT	9	Unmodified	_KREELKKKT_					0	0	0			REV__tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	REV__tr|U7SYZ0|U7SYZ0_FUSNUResponseregulatorNasTOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00817PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	580.3613891601562	2	580.361505	1158.70846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.907	1	59.635	59.135	60.135	-0.27156								0	0	0	0.77012	1	22557	22557		0.45834	0	1		+		17484	17874	10734	10791	16784	16784					0.13545054214114316
KREPNKVS	8	Unmodified	_KREPNKVS_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	MULTI-MSMS	HCT116MG_D190212_S1	1	479.2774963378906	2	479.277441	956.540328	0.28027	0.00013433	0.030661	1.4695E-05	0.31093	0.00014902	479.27731022138573	46.259	0.30992	46.259	46.13	46.44	0					9	5	2	0	0	0	0.85789	1	17572	17572		3.9444	0.3479	1	15515000	+		17485	13118	10735	10792	16785	16785					0.060319920203255606
KRFEKVYTH	9	Unmodified	_KRFEKVYTH_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	HCT116MG_D190212_S1	1	403.22412109375	3	403.224257	1206.65094	0.0028382	1.1444E-06	0.05367	2.1641E-05	0.056508	2.2785E-05	403.22416522742185	16.863	0.15648	16.863	16.785	16.942	0					6	2	3	0	0	0	0.01405	1	5725	5725		93.938	78.981	1	9379200			17486	6306	10736	10793	16786	16786					0.05588212008547089
KRFEKVYTH	9	Unmodified	_KRFEKVYTH_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	HCT116MG_D190212_S1	1	603.8027954101562	2	604.332747	1206.65094	0.55364	0.00033458	0.34095	0.00020605	0.89459	0.00054063	604.3332498558425	16.863	0.15648	16.863	16.785	16.942	0					4	2	2	0	0	0	0.20753	1	5718	5718		33.445	20.402	1	2353500			17487	6306	10736	10793	16787	16787					0.05588212008547089
KRFEKVYTH	9	Unmodified	_KRFEKVYTH_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	HCT116MG_D190212_S2	2	604.3330078125	2	604.332747	1206.65094	0.70392	0.0004254	-0.094231	-5.6947E-05	0.60969	0.00036846	604.3326465454866	17.667	0.26095	17.31	17.18	17.441	-0.35647					12	4	4	0	0	0	0.0039465	1	6028	6028		151.48	120.21	1	52380000			17488	6306	10736	10793	16788	16788					0.05588212008547089
KRFEKVYTH	9	Unmodified	_KRFEKVYTH_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	HCT116MG_D190212_S2	2	403.2242126464844	3	403.224257	1206.65094	-0.087855	-3.5425E-05	0.16949	6.8342E-05	0.081633	3.2916E-05	403.22424654578555	17.667	0.31312	17.31	17.127	17.441	-0.35647					13	5	4	0	0	0	0.0029864	1	6029	6029		154.04	131.26	1	44849000			17489	6306	10736	10793	16789	16789					0.05588212008547089
KRFGKAYNL	9	Unmodified	_KRFGKAYNL_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MSMS	HCT116MG_D190212_S1	1	548.8169555664062	2	548.816733	1095.61891	0.40147	0.00022034	-0.03116	-1.7101E-05	0.37031	0.00020323	548.8166908129532	25.118	0.31379	25.118	24.987	25.301	0					10	5	3	0	0	0	0.064006	1	9034	9034		74.929	36.778	1	25158000			17490	6217	10737	10794	16790	16790					0.07492844325406622
KRFGKAYNL	9	Unmodified	_KRFGKAYNL_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MSMS	HCT116MG_D190212_S1	1	366.2130432128906	3	366.213581	1095.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.136	1	25.136	24.636	25.636	0								0	0	0	0.14112	1	9028	9028		51.63	26.23	1				17491	6217	10737	10794	16791	16791					0.07492844325406622
KRFGKAYNL	9	Unmodified	_KRFGKAYNL_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MSMS	HCT116MG_D190212_S2	2	366.2134094238281	3	366.213581	1095.61891	-0.28508	-0.0001044	0.1026	3.7574E-05	-0.18248	-6.6826E-05	366.21356617163195	25.686	0.31113	25.317	25.187	25.498	-0.36914					16	5	4	0	0	0	0.10244	1	9262	9262		57.722	28.64	1	156840000			17492	6217	10737	10794	16792	16792					0.07492844325406622
KRFGKAYNL	9	Unmodified	_KRFGKAYNL_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MSMS	HCT116MG_D190212_S2	2	548.8171997070312	2	548.816733	1095.61891	0.34793	0.00019095	0.25778	0.00014148	0.60571	0.00033243	548.816798289435	25.686	0.31113	25.317	25.187	25.498	-0.36914					15	5	4	0	0	0	0.02327	1	9266	9266		103.75	46.277	1	160290000			17493	6217	10737	10794	16793	16793					0.07492844325406622
KRFGKAYNL	9	Unmodified	_KRFGKAYNL_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MATCH	HCT116MG_D190212_S3	3		2	548.816733	1095.61891	0.51998	0.00028537	-0.021132	-1.1598E-05	0.49885	0.00027378	548.8171338820569	25.097	0.15663	24.991	24.891	25.048	-0.10618	-0.15132	-0.00022993	NaN	103.75	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1678200			17494	6217	10737	10794							0.07492844325406622
KRFGKAYNL	9	Unmodified	_KRFGKAYNL_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	366.213581	1095.61891	0.0073141	2.6785E-06	-0.48208	-0.00017654	-0.47477	-0.00017387	366.2132749287916	25.075	0.31305	24.969	24.839	25.152	-0.10618	-0.17389	-0.00057821	NaN	57.722	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4858700			17495	6217	10737	10794							0.07492844325406622
KRFRLRRLL	9	Unmodified	_KRFRLRRLL_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MSMS	HCT116MG_D190212_S2	2	629.4237060546875	2	629.422565	1256.83058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.155	1	57.985	57.485	58.485	-0.1703								0	0	0	0.7701	1	22468	22468		0.52476	0.066424	1				17496	6138	10738	10795	16794	16794					0.21243560807033646
KRFRSRWLLFK	11	Unmodified	_KRFRSRWLLFK_					0	0	0			REV__ENST00000392876.7_1_12:104169265-104169487:-|nuORF	REV__ENST00000392876.7_1_12:104169265-104169487:-|nuORF	MSMS	HCT116MG_D190212_S1	1	512.9808349609375	3	512.98065	1535.92012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.39	1	63.39	62.89	63.89	0								0	0	0	0.96192	1	24489	24489		0.08335	0	1		+		17497	15319	10739	10796	16795	16795					0.17359770695725274
KRFSGTVRL	9	Unmodified	_KRFSGTVRL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S2	2	355.21710205078125	3	355.217214	1062.62981	-0.13857	-4.9222E-05	-0.14835	-5.2697E-05	-0.28692	-0.00010192	355.21713023867204	28.023	0.20707	27.693	27.563	27.77	-0.32987					5	3	2	0	0	0	0.54677	1	10230	10230		14.218	4.6742	1	23202000			17498	6266	10740	10797	16796	16796					0.10100246699721538
KRGDLIIEF	9	Unmodified	_KRGDLIIEF_					0	0	0		DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	545.8172607421875	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.467	1	50.467	49.967	50.967	0								0	0	0	0.14112	1	19257	19257		51.63	26.23	1				17499	709	10741	10798	16797	16797					0.07702004885732094
KRGDLIIEF	9	Unmodified	_KRGDLIIEF_					0	0	0		DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	545.8168334960938	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.507	1	50.507	50.007	51.007	0								0	0	0	0.08589	1	19273	19273		60.074	14.053	1				17500	709	10741	10798	16798	16798					0.07702004885732094
KRGDLIIEF	9	Unmodified	_KRGDLIIEF_					0	0	0		DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.8162231445312	2	545.816399	1089.61824	0.55409	0.00030243	0.35116	0.00019167	0.90524	0.0004941	545.8164904125318	50.549	0.67728	50.377	50.191	50.868	-0.1719					25	12	4	0	0	0	0.011082	1	19361	19361		110.67	32.525	1	243690000			17501	709	10741	10798	16799	16799					0.07702004885732094
KRGDLIIEF	9	Unmodified	_KRGDLIIEF_					0	0	0		DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	364.2131652832031	3	364.213358	1089.61824	-0.11478	-4.1804E-05	0.21566	7.8547E-05	0.10088	3.6743E-05	364.2133932450225	50.549	0.21053	50.377	50.245	50.456	-0.1719					6	3	2	0	0	0	0.14171	1	19398	19398		38.615	22.466	1	19266000			17502	709	10741	10798	16800	16800					0.07702004885732094
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	HCT116MG_D190212_S1	1	538.826171875	2	538.826766	1075.63898	0.35542	0.00019151	0.017971	9.6831E-06	0.37339	0.00020119	538.8266583195161	47.769	0.34996	47.769	47.595	47.944	0					15	6	3	0	0	0	0.012496	1	18160	18160		107.19	39.843	1	175180000			17503	807	10742	10799	16801	16801					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	HCT116MG_D190212_S1	1	359.553466796875	3	359.553603	1075.63898	-0.2069	-7.4392E-05	-0.13407	-4.8205E-05	-0.34097	-0.0001226	359.5534617262084	47.815	0.24659	47.815	47.646	47.893	0					9	4	3	0	0	0	0.063511	1	18179	18179		53.404	24.322	1	35329000			17504	807	10742	10799	16802	16802					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	HCT116MG_D190212_S2	2	538.8271484375	2	538.826766	1075.63898	0.81571	0.00043953	0.11314	6.0962E-05	0.92885	0.00050049	538.8268075564289	47.765	0.51328	47.632	47.48	47.993	-0.13281					23	9	3	0	0	0	0.0057285	1	18220	18220		131.27	41.841	1	1468999999.9999998			17505	807	10742	10799	16803	16803					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	HCT116MG_D190212_S2	2	359.55377197265625	3	359.553603	1075.63898	0.16694	6.0024E-05	0.37242	0.00013391	0.53937	0.00019393	359.55364151717686	47.758	0.46259	47.625	47.48	47.943	-0.13281					21	8	4	0	0	0	0.020181	1	18242	18242		76.825	32.966	1	155890000			17506	807	10742	10799	16804	16804					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	HCT116MG_D190212_S2	2	1076.6483154296875	1	1076.64626	1075.63898	0.80763	0.00086953	0.19956	0.00021485	1.0072	0.0010844	1076.6464961955514	47.763	0.25815	47.63	47.532	47.79	-0.13281					7	4	2	0	0	0	0.053544	1	18247	18247		72.968	36.841	1	23274000			17507	807	10742	10799	16805	16805					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	HCT116MG_D190212_S3	3	538.8269653320312	2	538.826766	1075.63898	0.42246	0.00022763	0.20024	0.00010789	0.6227	0.00033553	538.8268385015151	48.117	0.62555	47.801	47.566	48.192	-0.31596					26	11	3	0	0	0	0.0057285	1	18069	18069		131.27	41.841	1	395840000			17508	807	10742	10799	16806	16806					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	HCT116MG_D190212_S3	3	359.5533447265625	3	359.553603	1075.63898	-0.13482	-4.8474E-05	0.24253	8.7201E-05	0.10771	3.8727E-05	359.5536124654948	48.117	0.4173	47.801	47.619	48.036	-0.31596					18	7	3	0	0	0	0.027492	1	18083	18083		70.332	26.474	1	71534000			17509	807	10742	10799	16807	16807					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	HCT116MG_D190212_S4	4	359.5536193847656	3	359.553603	1075.63898	-0.050981	-1.833E-05	0.65952	0.00023713	0.60854	0.0002188	359.55371471497057	48.173	0.31087	47.806	47.624	47.935	-0.36728					9	5	2	0	0	0	0.042978	1	17818	17818		70.332	26.474	1	16733000			17510	807	10742	10799	16808	16808					0.1041859526535518
KRGEIPLEL	9	Unmodified	_KRGEIPLEL_					0	0	0		ENST00000451057.1_1_7:156990296-156991186:-|nuORF;ENSG00000215114|ENST00000399598|UBXN2B	ENST00000451057.1_1_7:156990296-156991186:-|nuORF	ENST00000451057.1_1_7:156990296-156991186:-|nuORF	MSMS	HCT116MG_D190212_S2	2	527.8165893554688	2	527.816399	1053.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.518	1	43.444	42.944	43.944	-0.073376								0	0	0	0.018972	1	16502	16502		93.166	13.57	1				17511	6446	10743	10800	16809	16809					0.09358004885712035
KRGKLPRWI	9	Unmodified	_KRGKLPRWI_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;ENST00000588652.5_1_19:45854889-45860860:-|nuORF;ENST00000391942.6_1_19:45854889-45865127:-|nuORF	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MSMS	HCT116MG_D190212_S3	3	385.2484436035156	3	385.248737	1152.72438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.056	1	47.74	47.24	48.24	-0.31596								0	0	0	0.768	1	18064	18064		4.897	1.31	1				17512	1962	10744	10801	16810	16810					0.1541280524170361
KRGPLFSH	8	Unmodified	_KRGPLFSH_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	HCT116MG_D190212_S1	1	471.2689514160156	2	471.269419	940.524284	0.1901	8.959E-05	0.15332	7.2253E-05	0.34342	0.00016184	471.2693834844192	23.353	0.313	23.353	23.158	23.471	0					13	5	3	0	0	0	0.064348	1	8299	8299		108	50.526	1	21594000			17513	3715	10745	10802	16811	16811					0.05164330574086762
KRGPLFSH	8	Unmodified	_KRGPLFSH_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	HCT116MG_D190212_S2	2	471.2694396972656	2	471.269419	940.524284	0.47644	0.00022453	0.0041364	1.9494E-06	0.48058	0.00022648	471.26926534081565	24.124	0.31102	23.744	23.563	23.874	-0.38003					15	5	3	0	0	0	0.061239	1	8611	8611		111.29	56.513	1	59265000			17514	3715	10745	10802	16812	16812					0.05164330574086762
KRHNYVRKV	9	Unmodified	_KRHNYVRKV_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MSMS	HCT116MG_D190212_S2	2	400.5754699707031	3	400.575513	1198.70471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.241	1	9.976	9.476	10.476	-0.26472								0	0	0	0.76978	1	3229	3229		0.86438	0.59536	1				17515	2710	10746	10803	16813	16813					0.1133042923092944
KRHNYVRKV	9	Unmodified	_KRHNYVRKV_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	399.8863525390625	3	400.575513	1198.70471	-0.17422	-6.9788E-05	0.11324	4.5362E-05	-0.060976	-2.4426E-05	400.57546969263467	14.433	0.1376	14.114	14.002	14.14	-0.31952					4	2	2	0	0	0	0.14607	1	4730	4730		38.615	25	1	5557500			17516	2710	10746	10803	16814	16814					0.1133042923092944
KRHRKRLKLLL	11	Unmodified	_KRHRKRLKLLL_					0	0	0			REV__EFNB1|p.G291Afs*30|1|0.41|ENSG00000090776|chrX:68840480-68840480|G/-|frameshift_variant	REV__EFNB1|p.G291Afs*30|1|0.41|ENSG00000090776|chrX:68840480-68840480|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	731.005615234375	2	731.004254	1459.99395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.318	1	41.943	41.443	42.443	-0.37565								0	0	0	0.96208	1	15549	15549		0	0	1		+		17517	10441	10747	10804	16815	16815					0.2823573885807491
KRIDIIHNL	9	Unmodified	_KRIDIIHNL_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	HCT116MG_D190212_S1	1	374.5643615722656	3	374.564502	1120.67168	-0.18996	-7.1154E-05	-0.13226	-4.954E-05	-0.32222	-0.00012069	374.5644145745346	36.962	0.25933	36.962	36.835	37.094	0					9	4	3	0	0	0	0.15281	1	13821	13821		47.732	8.519	1	26365000			17518	4643	10748	10805	16816	16816					0.11616802388221004
KRIDIIHNL	9	Unmodified	_KRIDIIHNL_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;YEATS2|p.T1011Pfs*25|1|0.46|ENSG00000163872|chr3:183790909-183790909|C/-|frameshift_variant	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	HCT116MG_D190212_S2	2	374.564453125	3	374.564502	1120.67168	-0.22644	-8.4815E-05	-0.22828	-8.5505E-05	-0.45471	-0.00017032	374.5643314982394	36.993	0.25756	36.878	36.705	36.963	-0.11478					10	4	3	0	0	0	0.031831	1	13861	13861		84.522	23.432	1	43718000			17519	4643	10748	10805	16817	16817					0.11616802388221004
KRILRRHKRDW	11	Unmodified	_KRILRRHKRDW_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MSMS	HCT116MG_D190212_S1	1	782.475341796875	2	782.476392	1562.93823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.966	1	52.966	52.466	53.466	0								0	0	0	0.96121	1	20273	20273		0.30703	0	1				17520	1120	10749	10806	16818	16818					0.1792790567042175
KRIRKLNHILL	11	Unmodified	_KRIRKLNHILL_					0	0	0			REV__ENST00000495326.1_1_2:191940916-192012929:-|nuORF	REV__ENST00000495326.1_1_2:191940916-192012929:-|nuORF	MSMS	HCT116MG_D190212_S1	1	702.470703125	2	702.469712	1402.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.551	1	60.551	60.051	61.051	0								0	0	0	0.96208	1	23343	23343		0	0	1		+		17521	12220	10750	10807	16819	16819					0.239526548385129
KRISITPTWT	10	Unmodified	_KRISITPTWT_					0	0	0			REV__SCN1A|p.N36Rfs*57|1|0.24|ENSG00000144285|chr2:166073515-166073516|-/CC|frameshift_variant	REV__SCN1A|p.N36Rfs*57|1|0.24|ENSG00000144285|chr2:166073515-166073516|-/CC|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	402.2331848144531	3	401.567912	1201.68191	-0.13473	-5.4104E-05	-0.35255	-0.00014157	-0.48728	-0.00019568	401.5677963043505	32.563	0.20871	32.333	32.202	32.411	-0.23009					5	3	2	0	0	0	0.31087	1	12053	12053		3.3196	0	1	10794000	+		17522	16156	10751	10808	16820	16820					0.08913365322791833
KRKFTKRR	8	Unmodified	_KRKFTKRR_					0	0	0			REV__GTF3A|p.C222R|1|0.06|ENSG00000122034|chr13:27434825-27434825|T/C|missense_variant	REV__GTF3A|p.C222R|1|0.06|ENSG00000122034|chr13:27434825-27434825|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	560.3642578125	2	560.364716	1118.71488	0.31044	0.00017396	-0.56015	-0.00031389	-0.24971	-0.00013993	560.3642820904724	58.539	0.3553	58.539	58.362	58.717	0					12	6	3	0	0	0	0.86858	1	22582	22582		2.0598	1.4583	1	27396000	+		17523	16863	10752	10809	16821	16821					0.1602703695616583
KRKFTKRR	8	Unmodified	_KRKFTKRR_					0	0	0			REV__GTF3A|p.C222R|1|0.06|ENSG00000122034|chr13:27434825-27434825|T/C|missense_variant	REV__GTF3A|p.C222R|1|0.06|ENSG00000122034|chr13:27434825-27434825|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	560.3823852539062	2	560.364716	1118.71488	0.31044	0.00017396	-0.56015	-0.00031389	-0.24971	-0.00013993	560.3642820904724	58.539	0.3553	58.539	58.362	58.717	0					12	6	3	0	0	0	0.33503	1	22607	22607		1.8442	1.2427	1	27396000	+		17524	16863	10752	10809	16822	16822					0.1602703695616583
KRKFYLRKRK	10	Unmodified	_KRKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	711.9633178710938	2	711.962055	1421.90956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.931	1	51.585	51.085	52.085	-0.34538								0	0	0	0.96377	1	19343	19343		1.6526	0	1				17525	7239	10753	10810	16823	16823					0.21547788041289095
KRKGGLGPPGS	11	Unmodified	_KRKGGLGPPGS_					0	0	0			REV__ENSG00000179041|ENST00000320270|RRS1	REV__ENSG00000179041|ENST00000320270|RRS1	MSMS	HCT116MG_D190212_S4	4	527.310302734375	2	527.311815	1052.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.311	1	30.941	30.441	31.441	-0.37026								0	0	0	0.88801	1	11359	11359		21.537	3.3906	1		+		17526	13624	10754	10811	16824	16824					0.08487656320039605
KRKGKVHS	8	Unmodified	_KRKGKVHS_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A2251Qfs*102|3|0.29|ENSG00000065526|chr1:15932985-15932985|C/-|frameshift_variant;SPEN|p.G1860Efs*9|1|0.33|ENSG00000065526|chr1:15931816-15931816|G/-|frameshift_variant;SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant;SPEN|p.N2053Tfs*11|1|0.43|ENSG00000065526|chr1:15932394-15932394|A/-|frameshift_variant;SPEN|p.A2105Lfs*33|1|0.46|ENSG00000065526|chr1:15932548-15932548|G/-|frameshift_variant;SPEN|p.I1052Sfs*40|1|0.35|ENSG00000065526|chr1:15929388-15929388|A/-|frameshift_variant;SPEN|p.I1159Lfs*28|1|0.25|ENSG00000065526|chr1:15929710-15929710|A/-|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MSMS	HCT116MG_D190212_S3	3	470.2962341308594	2	470.295968	938.577383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.488	1	58.218	57.718	58.718	-0.26932								0	0	0	0.8837	1	22251	22251		4.756	0	1				17527	1159	10755	10812	16825	16825					0.10563708356744428
KRKIAKRIFQK	11	Unmodified	_KRKIAKRIFQK_					0	0	0		tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	tr|U7T2Z3|U7T2Z3_FUSNUHTHdeoR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00513PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	708.4703979492188	2	708.469712	1414.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.546	1	15.546	15.046	16.046	0								0	0	0	0.95366	1	5172	5172		2.7352	0	1				17528	18586	10756	10813	16826	16826					0.2340065483847411
KRKILIKHKKL	11	Unmodified	_KRKILIKHKKL_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;PLCG1|p.L868*|1|0.36|ENSG00000124181|chr20:41169474-41169474|C/-|frameshift_variant	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	MSMS	HCT116MG_D190212_S1	1	702.9996948242188	2	702.998106	1403.98166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.981	1	43.981	43.481	44.481	0								0	0	0	0.96208	1	16631	16631		0	0	1				17529	2831	10757	10814	16827	16827					0.29582702395032356
KRKILLLFV	9	Unmodified	_KRKILLLFV_					0	0	0		ENST00000397128.6_1_5:40760712-40760853:-|nuORF	ENST00000397128.6_1_5:40760712-40760853:-|nuORF	ENST00000397128.6_1_5:40760712-40760853:-|nuORF	MSMS	HCT116MG_D190212_S4	4	377.2644958496094	3	377.265505	1128.77469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.588	1	44.215	43.715	44.715	-0.37326								0	0	0	0.77018	1	16432	16432		0.26902	0	1				17530	7663	10758	10815	16828	16828					0.2154491484684513
KRKKKKKLP	9	Unmodified	_KRKKKKKLP_					0	0	0			REV__ENST00000515726.1_1_4:124318844-124319012:+|nuORF	REV__ENST00000515726.1_1_4:124318844-124319012:+|nuORF	MSMS	HCT116MG_D190212_S4	4	385.2809143066406	3	385.280037	1152.81828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.993	1	37.61	37.11	38.11	-0.38283								0	0	0	0.76991	1	13909	13909		1.1933	0	1		+		17531	16208	10759	10816	16829	16829					0.24798524343987083
KRKKKKQKRSP	11	Unmodified	_KRKKKKQKRSP_					0	0	0			REV__NUFIP1|p.C176Vfs*27|1|0.41|ENSG00000083635|chr13:44980790-44980790|A/-|frameshift_variant	REV__NUFIP1|p.C176Vfs*27|1|0.41|ENSG00000083635|chr13:44980790-44980790|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	706.31787109375	2	706.470244	1410.92593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.674	1	26.674	26.174	27.174	0								0	0	0	0.96121	1	9648	9648		1.3295	0.13619	1		+		17532	10906	10760	10817	16830	16830					0.23690869207393916
KRKKKKVKRKA	11	Unmodified	_KRKKKKVKRKA_					0	0	0			REV__nc|ENSG00000187624|Q6ZQX7-2|LIAT1	REV__nc|ENSG00000187624|Q6ZQX7-2|LIAT1	MSMS	HCT116MG_D190212_S2	2	699.497314453125	2	699.498804	1396.98306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.568	1	10.294	9.7942	10.794	-0.27365								0	0	0	0.96208	1	3351	3351		0	0	1		+		17533	13927	10761	10818	16831	16831					0.30044336483751977
KRKKKKVSH	9	Unmodified	_KRKKKKVSH_					0	0	0			REV__CWF19L2|p.K81R|1|0.15|ENSG00000152404|chr11:107454547-107454547|T/C|missense_variant	REV__CWF19L2|p.K81R|1|0.15|ENSG00000152404|chr11:107454547-107454547|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	569.9708251953125	2	569.880199	1137.74584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.403	1	30.119	29.619	30.619	-0.28453								0	0	0	0.768	1	11176	11176		7.9102	4.3137	1		+		17534	10315	10762	10819	16832	16832					0.18248190270423947
KRKKKLRKLLK	11	Unmodified	_KRKKKLRKLLK_					0	0	0		ARFGEF2-SULF2|2|fusion;ARFGEF2-SULF2|1|fusion;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	ARFGEF2-SULF2|2|fusion	ARFGEF2-SULF2|2|fusion	MSMS	HCT116MG_D190212_S1	1	720.0266723632812	2	720.024655	1438.03476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.668	1	49.668	49.168	50.168	0								0	0	0	0.96208	1	18932	18932		0	0	1				17535	168	10763	10820	16833	16833					0.33326080177698714
KRKKKRKKRRR	11	Unmodified	_KRKKKRKKRRR_					0	0	0			REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF	REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	HCT116MG_D190212_S1	1	523.3701782226562	3	523.369242	1567.0859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.623	1	20.623	20.123	21.123	0								0	0	0	0.96194	1	7217	7217		0.073264	0	1		+		17536	14508	10764	10821	16834	16834					0.32503841995071525
KRKKRIKRRAL	11	Unmodified	_KRKKRIKRRAL_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ;PKDREJ|p.P1887Qfs*10|2|0.18|ENSG00000130943|chr22:46257665-46257665|A/-|frameshift_variant	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MSMS	HCT116MG_D190212_S3	3	485.0951843261719	3	485.007311	1452.0001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.821	1	49.505	49.005	50.005	-0.31525								0	0	0	0.96208	1	18771	18771		0	0	1				17537	3116	10765	10822	16835	16835					0.29218257089587496
KRKKVKFTT	9	Unmodified	_KRKKVKFTT_					0	0	0		ENSG00000181234|ENST00000435159|TMEM132C	ENSG00000181234|ENST00000435159|TMEM132C	ENSG00000181234|ENST00000435159|TMEM132C	MSMS	HCT116MG_D190212_S3	3	379.2485656738281	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.793	1	53.493	52.993	53.993	-0.29946								0	0	0	0.77019	1	20367	20367		0.23584	0.028987	1				17538	5628	10766	10823	16836	16836					0.1617396580197692
KRKKVKFTT	9	Unmodified	_KRKKVKFTT_					0	0	0		ENSG00000181234|ENST00000435159|TMEM132C	ENSG00000181234|ENST00000435159|TMEM132C	ENSG00000181234|ENST00000435159|TMEM132C	MSMS	HCT116MG_D190212_S3	3	379.248779296875	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.375	1	54.079	53.579	54.579	-0.29587								0	0	0	0.77019	1	20602	20602		0.23584	0	1				17539	5628	10766	10823	16837	16837					0.1617396580197692
KRKLGRRVIPR	11	Unmodified	_KRKLGRRVIPR_					0	0	0		tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1	tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1	tr|U7T8M1|U7T8M1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00100PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	460.3115539550781	3	460.312511	1377.9157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.021	1	45.021	44.521	45.521	0								0	0	0	0.96138	1	17047	17047		0.36667	0.29341	1				17540	18655	10767	10824	16838	16838					0.24186306272827096
KRKLKKISV	9	Unmodified	_KRKLKKISV_					0	0	0			REV__nc|ENSG00000138684|Q9HBE4-2|IL21	REV__nc|ENSG00000138684|Q9HBE4-2|IL21	MSMS	HCT116MG_D190212_S2	2	367.25897216796875	3	367.260642	1098.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.858	1	57.683	57.183	58.183	-0.17494								0	0	0	0.77019	1	22348	22348		0.23584	0.23584	1		+		17541	12238	10768	10825	16839	16839					0.21466842698691835
KRKLLLLLL	9	Unmodified	_KRKLLLLLL_					0	0	0		ENST00000433301.5_1_12:110943436-110952922:+|nuORF	ENST00000433301.5_1_12:110943436-110952922:+|nuORF	ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MSMS	HCT116MG_D190212_S2	2	555.41162109375	2	555.410269	1108.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.129	1	51.943	51.443	52.443	-0.18597								0	0	0	0.77025	1	20018	20018		0	0	1				17542	7867	10769	10826	16840	16840					0.25593487880951216
KRKLLLLLL	9	Unmodified	_KRKLLLLLL_					0	0	0		ENST00000433301.5_1_12:110943436-110952922:+|nuORF	ENST00000433301.5_1_12:110943436-110952922:+|nuORF	ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MSMS	HCT116MG_D190212_S2	2	555.411865234375	2	555.410269	1108.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.159	1	58.993	58.493	59.493	-0.1653								0	0	0	0.77025	1	22878	22878		0	0	1				17543	7867	10769	10826	16841	16841					0.25593487880951216
KRKLRVSQEPF	11	Unmodified	_KRKLRVSQEPF_					0	0	0		ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant;nc|ENSG00000198466|Q96SQ5-2|ZNF587;ENSG00000198466|ENST00000339656|ZNF587;ENSG00000173480|ENST00000312026|ZNF417	ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant	ZNF417|p.R546Kfs*4|1|0.34|ENSG00000173480|chr19:57908641-57908642|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	463.6115417480469	3	463.277132	1386.80957	0.36267	0.00016801	0.34021	0.00015761	0.70288	0.00032563	463.61164362932396	33.063	0.15624	33.063	32.985	33.141	0					4	2	2	0	0	0	0.72218	1	12252	12252		7.846	5.5933	1	7053800			17544	5290	10770	10827	16842	16842					0.13163505916850227
KRKPIRVLS	9	Unmodified	_KRKPIRVLS_					0	0	0		ENST00000474887.5_1_2:25458684-25467188:-|nuORF;nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;ENSG00000119772|ENST00000321117|DNMT3A	ENST00000474887.5_1_2:25458684-25467188:-|nuORF	ENST00000474887.5_1_2:25458684-25467188:-|nuORF	MSMS	HCT116MG_D190212_S2	2	366.24853515625	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.325	1	62.189	61.689	62.689	-0.13585								0	0	0	0.76995	1	24155	24155		1.0715	0.80244	1				17545	2666	10771	10828	16843	16843					0.18001385521847624
KRKPPSTSITV	11	Unmodified	_KRKPPSTSITV_					0	0	0			REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MSMS	HCT116MG_D190212_S3	3	607.366455078125	2	607.366787	1212.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.954	1	58.69	58.19	59.19	-0.26405								0	0	0	0.9598	1	22439	22439		1.1933	0	1		+		17546	10866	10772	10829	16844	16844					0.12117036868539799
KRKRKHKPKKL	11	Unmodified	_KRKRKHKPKKL_					0	0	0			REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	REV__SETBP1|p.F1174Lfs*13|1|0.35|ENSG00000152217|chr18:44952858-44952858|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	482.8354187011719	3	483.000045	1445.9783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.952	1	13.021	12.521	13.521	0.069158								0	0	0	0.9619	1	4077	4077		0.094841	0.094841	1		+		17547	12624	10773	10830	16845	16845					0.27315452341008495
KRKRTKGKKLL	11	Unmodified	_KRKRTKGKKLL_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MSMS	HCT116MG_D190212_S2	2	678.4703369140625	2	678.469712	1354.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.903	1	63.787	63.287	64.287	-0.11586								0	0	0	0.96208	1	24764	24764		0	0	1				17548	9501	10774	10831	16846	16846					0.2616065483853163
KRKRWFINRHF	11	Unmodified	_KRKRWFINRHF_					0	0	0			REV__ENST00000583028.1_1_17:62175367-62207458:-|nuORF	REV__ENST00000583028.1_1_17:62175367-62207458:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	529.97705078125	3	529.975899	1586.90587	0.37279	0.00019757	1.9317	0.0010238	2.3045	0.0012213	529.9770166827954	23.345	0.31092	22.96	22.83	23.141	-0.3852					7	5	2	0	0	0	0.74191	1	8343	8343		1.3296	0	1	20045000	+		17549	16633	10775	10832	16847	16847					0.13589118267441336
KRKVAWLLRWK	11	Unmodified	_KRKVAWLLRWK_					0	0	0		nc|ENSG00000133731|P29218-3|IMPA1	nc|ENSG00000133731|P29218-3|IMPA1	nc|ENSG00000133731|P29218-3|IMPA1	MSMS	HCT116MG_D190212_S2	2	742.471435546875	2	742.472255	1482.92996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.758	1	57.583	57.083	58.083	-0.17494								0	0	0	0.96121	1	22308	22308		0	0	1				17550	9463	10776	10833	16848	16848					0.2078095870110701
KRKVKLLLKEL	11	Unmodified	_KRKVKLLLKEL_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1;ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	684.2032470703125	2	684.476672	1366.93879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.517	1	14.597	14.097	15.097	0.079683								0	0	0	0.96208	1	4679	4679		0	0	1				17551	4672	10777	10834	16849	16849					0.26999887546958234
KRKVSSSR	8	Unmodified	_KRKVSSSR_					0	0	0			REV__ENSG00000147316|ENST00000344683|MCPH1;REV__MCPH1|p.P771Qfs*8|1|0.21|ENSG00000147316|chr8:6621546-6621546|C/-|frameshift_variant	REV__MCPH1|p.P771Qfs*8|1|0.21|ENSG00000147316|chr8:6621546-6621546|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	474.2909851074219	2	474.290882	946.567212	0.10356	4.9118E-05	0.043366	2.0568E-05	0.14693	6.9686E-05	474.2908278167152	44.223	2.1871	44.223	43.16	45.347	0					65	41	2	0	0	0	0.8672	1	16854	16854		2.3027	0	1	189580000	+		17552	12509;17010	10778	10835	16850	16850					0.09179100631524761
KRLCRPQANSL	11	Unmodified	_KRLCRPQANSL_					0	0	0		ENST00000486758.5_1_4:77631429-77663226:+|nuORF;SHROOM3|p.T1603Nfs*9|1|0.64|ENSG00000138771|chr4:76756543-76756544|-/A|frameshift_variant;ENSG00000138771|ENST00000296043|SHROOM3	ENST00000486758.5_1_4:77631429-77663226:+|nuORF	ENST00000486758.5_1_4:77631429-77663226:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	429.70306396484375	3	429.243434	1284.70847	0.13098	5.6221E-05	0.58563	0.00025138	0.71661	0.0003076	429.24386859646785	32.789	0.20789	32.578	32.43	32.638	-0.21135					5	3	2	0	0	0	0.3642	1	12086	12086		1.0136	0	1	6235400			17553	3587	10779	10836	16851	16851					0.07750730942507289
KRLDAVRHA	9	Unmodified	_KRLDAVRHA_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-MSMS	HCT116MG_D190212_S2	2	533.3172607421875	2	533.317432	1064.62031	0.34782	0.0001855	-0.30449	-0.00016239	0.043323	2.3105E-05	533.3171974818296	15.827	0.2088	15.493	15.376	15.585	-0.33451					5	3	2	0	0	0	0.5435	1	5302	5302		14.405	3.5815	1	4045900			17554	1539	10780	10837	16852	16852					0.09058478414181081
KRLDAVRHA	9	Unmodified	_KRLDAVRHA_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-MSMS	HCT116MG_D190212_S2	2	355.8805847167969	3	355.880713	1064.62031	-0.25504	-9.0762E-05	-0.12275	-4.3685E-05	-0.37779	-0.00013445	355.88066489979354	15.841	0.2088	15.507	15.376	15.585	-0.33451					6	3	2	0	0	0	0.53593	1	5308	5308		19.362	7.8441	1	4815000			17555	1539	10780	10837	16853	16853					0.09058478414181081
KRLHRQGQTEK	11	Unmodified	_KRLHRQGQTEK_					0	0	0		tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	690.893310546875	2	690.894566	1379.77458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.415	1	14.254	13.754	14.754	-0.16089								0	0	0	0.95731	1	4564	4564		2.4985	1.0166	1				17556	18642	10781	10838	16854	16854					0.09988263108880346
KRLILLIQKK	10	Unmodified	_KRLILLIQKK_					0	0	0			REV__ENST00000354566.7_1_11:85436805-85436946:-|nuORF	REV__ENST00000354566.7_1_11:85436805-85436946:-|nuORF	MSMS	HCT116MG_D190212_S2	2	418.2978210449219	3	418.299097	1251.87546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.599	1	54.409	53.909	54.909	-0.1894								0	0	0	0.97061	1	21025	21025		0.12286	0	1		+		17557	15031	10782	10839	16855	16855					0.25959946829675573
KRLIQWLK	8	Unmodified	_KRLIQWLK_					0	0	0		ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	MSMS	HCT116MG_D190212_S1	1	542.855224609375	2	542.853119	1083.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.249	1	11.249	10.749	11.749	0								0	0	0	0.8837	1	3524	3524		0.69038	0	1				17558	5443	10783	10840	16856	16856					0.1531859811882441
KRLIVAIPAL	10	Unmodified	_KRLIVAIPAL_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	365.25311279296875	3	365.253376	1092.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.2	1	49.841	49.341	50.341	-0.35878								0	0	0	0.97045	1	18643	18643		0.15932	0	1		+		17559	10417	10784	10841	16857	16857					0.19564037950112834
KRLLIGAIIVP	11	Unmodified	_KRLLIGAIIVP_					0	0	0			REV__tr|U7T391|U7T391_FUSNUUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murGPE=3SV=1	REV__tr|U7T391|U7T391_FUSNUUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murGPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	398.27484130859375	3	398.276181	1191.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.196	1	48.196	47.696	48.696	0								0	0	0	0.95954	1	18332	18332		1.3296	0.11481	1		+		17560	17939	10785	10842	16858	16858					0.21848282529981589
KRLLIGAIIVP	11	Unmodified	_KRLLIGAIIVP_					0	0	0			REV__tr|U7T391|U7T391_FUSNUUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murGPE=3SV=1	REV__tr|U7T391|U7T391_FUSNUUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murGPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	398.27447509765625	3	398.276181	1191.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.153	1	24.092	23.592	24.592	-0.061449								0	0	0	0.96111	1	8563	8563		0.50596	0.23694	1		+		17561	17939	10785	10842	16859	16859					0.21848282529981589
KRLRKAIRT	9	Unmodified	_KRLRKAIRT_					0	0	0		nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S1	1	381.25946044921875	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.522	1	62.522	62.022	63.022	0								0	0	0	0.77025	1	24144	24144		0	0	1				17562	5376	10786	10843	16860	16860					0.19199592644667973
KRLRKAIRT	9	Unmodified	_KRLRKAIRT_					0	0	0		nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S1	1	381.2593688964844	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.056	1	63.056	62.556	63.556	0								0	0	0	0.77025	1	24359	24359		0	0	1				17563	5376	10786	10843	16861	16861					0.19199592644667973
KRLRKAIRT	9	Unmodified	_KRLRKAIRT_					0	0	0		nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S1	1	381.2591857910156	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.148	1	63.148	62.648	63.648	0								0	0	0	0.77025	1	24396	24396		0	0	1				17564	5376	10786	10843	16862	16862					0.19199592644667973
KRLRKAIRT	9	Unmodified	_KRLRKAIRT_					0	0	0		nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S1	1	381.2592468261719	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.676	1	63.676	63.176	64.176	0								0	0	0	0.77025	1	24597	24597		0	0	1				17565	5376	10786	10843	16863	16863					0.19199592644667973
KRLRKAIRT	9	Unmodified	_KRLRKAIRT_					0	0	0		nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S1	1	381.2594299316406	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.176	1	64.176	63.676	64.676	0								0	0	0	0.77025	1	24765	24765		0	0	1				17566	5376	10786	10843	16864	16864					0.19199592644667973
KRLRKAIRT	9	Unmodified	_KRLRKAIRT_					0	0	0		nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S1	1	381.2594909667969	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.69	1	64.69	64.19	65.19	0								0	0	0	0.77025	1	24938	24938		0	0	1				17567	5376	10786	10843	16865	16865					0.19199592644667973
KRLRKAIRT	9	Unmodified	_KRLRKAIRT_					0	0	0		nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S1	1	381.2595520019531	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.997	1	64.997	64.497	65.497	-0.00046539								0	0	0	0.77025	1	25037	25037		0	0	1				17568	5376	10786	10843	16866	16866					0.19199592644667973
KRLRLDPPPPQ	11	Unmodified	_KRLRLDPPPPQ_					0	0	0			REV__ENST00000466075.1_1_2:239136435-239140270:-|nuORF	REV__ENST00000466075.1_1_2:239136435-239140270:-|nuORF	MSMS	HCT116MG_D190212_S1	1	658.8926391601562	2	658.893503	1315.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.389	1	29.389	28.889	29.889	0								0	0	0	0.94538	1	10740	10740		8.7454	0	1		+		17569	15824	10787	10844	16867	16867					0.12719834371068828
KRLRSLSS	8	Unmodified	_KRLRSLSS_					0	0	0			REV__ENSG00000107872|ENST00000369956|FBXL15	REV__ENSG00000107872|ENST00000369956|FBXL15	MULTI-SECPEP	HCT116MG_D190212_S2	2	473.27978515625	2	473.793258	945.571963	0.58568	0.00027749	-1.2764	-0.00060474	-0.69069	-0.00032725	473.7929021898372	47.704	0.31007	47.572	47.48	47.79	-0.13281					9	5	2	0	0	0	0.25719	1	18243	18243		36.044	11.37	1	12666000	+		17570	11329	10788	10845	16868	16868					0.09699984774272252
KRLVFILVLL	10	Unmodified	_KRLVFILVLL_					0	0	0			REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	MSMS	HCT116MG_D190212_S2	2	405.2845764160156	3	405.284677	1212.8322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.679	1	61.536	61.036	62.036	-0.14227								0	0	0	0.97045	1	23894	23894		0.15932	0.15932	1		+		17571	12373	10789	10846	16869	16869					0.234297570524177
KRLWQRRRRPA	11	Unmodified	_KRLWQRRRRPA_					0	0	0		ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	507.8135986328125	3	508.314915	1521.92291	0.36502	0.00018554	-2.2771	-0.0011575	-1.9121	-0.00097193	508.3137963774415	55.116	1.071	54.928	54.1	55.171	-0.18797					32	20	2	0	0	0	0.36593	1	21254	21254		1.3296	0	1	195120000			17572	8534	10790	10847	16870	16870					0.18283038873232726
KRMPYFIET	9	Unmodified	_KRMPYFIET_					0	0	0		ENST00000594073.1_1_14:92069540-92069609:-|nuORF;ENSG00000113356|ENST00000651687|POLR3G	ENST00000594073.1_1_14:92069540-92069609:-|nuORF	ENST00000594073.1_1_14:92069540-92069609:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	592.8106079101562	2	592.810259	1183.60597	0.42675	0.00025298	0.39398	0.00023356	0.82074	0.00048654	592.8103663283442	39.839	0.31181	39.839	39.657	39.969	0					10	5	2	0	0	0	0.30117	1	14994	14994		30.637	1.555	1	5508900			17573	2382	10791	10848	16871	16871					0.021506451510276747
KRMPYFIET	9	Unmodified	_KRMPYFIET_					0	0	0		ENST00000594073.1_1_14:92069540-92069609:-|nuORF;ENSG00000113356|ENST00000651687|POLR3G	ENST00000594073.1_1_14:92069540-92069609:-|nuORF	ENST00000594073.1_1_14:92069540-92069609:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	592.8098754882812	2	592.810259	1183.60597	0.42109	0.00024962	-0.1829	-0.00010843	0.23819	0.0001412	592.8101729853415	39.889	0.41402	39.816	39.636	40.05	-0.072838					12	7	3	0	0	0	0.24895	1	15057	15057		36.127	10.728	1	19138000			17574	2382	10791	10848	16872	16872					0.021506451510276747
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	372.5367431640625	3	372.536724	1114.58834	-0.048325	-1.8003E-05	-0.20342	-7.5782E-05	-0.25175	-9.3784E-05	372.53672655538907	26.423	0.78157	26.423	26.136	26.918	0					35	12	5	0	0	0	0.016701	1	9527	9527		90.135	64.114	1	806840000			17575	2936	10792	10849	16873	16873					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	558.3016357421875	2	558.301447	1114.58834	0.49061	0.00027391	-0.0075263	-4.2019E-06	0.48308	0.0002697	558.3014306792873	26.423	0.46864	26.423	26.24	26.709	0					26	8	5	0	0	0	0.0062667	1	9529	9529		126.57	82.794	1	434130000			17576	2936	10792	10849	16874	16874					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	372.5367126464844	3	372.536724	1114.58834	-0.25206	-9.3901E-05	-0.037916	-1.4125E-05	-0.28998	-0.00010803	372.53677858352484	26.829	0.83572	26.477	26.293	27.128	-0.35254					45	15	5	0	0	0	0.010834	1	9723	9723		100.09	69.387	1	3298199999.9999995			17577	2936	10792	10849	16875	16875					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	558.3017578125	2	558.301447	1114.58834	0.32158	0.00017954	-0.074039	-4.1336E-05	0.24754	0.0001382	558.3014523428658	26.829	0.78465	26.477	26.293	27.077	-0.35254					46	14	6	0	0	0	0.0094709	2	9724	9724;9759		114.65	70.877	1	2432900000			17578	2936	10792	10849	16876;16877	16876					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	1115.596435546875	1	1115.59562	1114.58834	0.48704	0.00054334	-0.41509	-0.00046307	0.071952	8.0269E-05	1115.5954044791492	26.829	0.3681	26.477	26.345	26.713	-0.35254					15	6	3	0	0	0	0.0063854	1	9730	9730		125.53	85.572	1	110910000			17579	2936	10792	10849	16878	16878					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	372.53662109375	3	372.536724	1114.58834	0.029659	1.1049E-05	-0.15648	-5.8295E-05	-0.12682	-4.7246E-05	372.5366175507686	26.538	0.36417	26.389	26.255	26.619	-0.14924					17	6	4	0	0	0	0.049545	1	9524	9524		67.838	41.817	1	48757000			17580	2936	10792	10849	16879	16879					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	558.301025390625	2	558.301447	1114.58834	0.50284	0.00028074	0.00082814	4.6235E-07	0.50367	0.0002812	558.3013836386954	26.534	0.26014	26.385	26.255	26.515	-0.14924					11	4	3	0	0	0	0.003706	1	9532	9532		155.03	98.849	1	24300000			17581	2936	10792	10849	16880	16880					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1115.59562	1114.58834	0.66504	0.00074192	-0.43835	-0.00048902	0.2267	0.0002529	1115.5950016457416	26.423	0.15628	26.423	26.293	26.449	0	-0.027003	-1.969E-05	NaN	125.53	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4567000			17582	2936	10792	10849							0.03563065940352317
KRNEFESVL	9	Unmodified	_KRNEFESVL_					0	0	0		nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-MSMS	HCT116MG_D190212_S1	1	561.301513671875	2	561.301113	1120.58767	0.17948	0.00010074	1.1387	0.00063915	1.3182	0.0007399	561.3017309501229	39.416	0.24141	39.416	39.259	39.501	0					11	4	3	0	0	0	0.17622	1	14800	14800		43.772	3.8227	1	15270000			17583	6418	10793	10850	16881	16881					0.032202265006844755
KRNFNPSFQ	9	Unmodified	_KRNFNPSFQ_					0	0	0		ENST00000358387.8_1_5:134235382-134235466:+|nuORF	ENST00000358387.8_1_5:134235382-134235466:+|nuORF	ENST00000358387.8_1_5:134235382-134235466:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2935180664062	2	569.293622	1136.57269	0.35087	0.00019975	-1.4264	-0.00081203	-1.0755	-0.00061228	569.2929406080873	26.836	0.26126	26.484	26.345	26.606	-0.35254					11	4	3	0	0	0	0.31596	1	9737	9737		29.082	9.8246	1	15873000			17584	7321	10794	10851	16882	16882					0.009867794233286986
KRNKRRLPHFR	11	Unmodified	_KRNKRRLPHFR_					0	0	0			REV__TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant	REV__TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	754.9645385742188	2	754.463284	1506.91202	0.71414	0.00053879	0.21579	0.00016281	0.92993	0.0007016	754.4633985476606	61.045	1.5514	61.045	60.749	62.3	0					53	29	3	0	0	0	0.74191	1	23805	23805		0.30703	0.30703	1	18870000	+		17585	17627	10795	10852	16883	16883					0.1788363649893654
KRNKRRLPHFR	11	Unmodified	_KRNKRRLPHFR_					0	0	0			REV__TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant	REV__TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	754.9645385742188	2	754.463284	1506.91202	0.71414	0.00053879	0.21579	0.00016281	0.92993	0.0007016	754.4633985476606	61.045	1.5514	61.045	60.749	62.3	0					53	29	3	0	0	0	0.36628	1	23805	23805		0.30703	0.30703	1	18870000	+		17586	17627	10795	10852	16884	16884					0.1788363649893654
KRNRTKAKVP	10	Unmodified	_KRNRTKAKVP_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574934.5_1_17:4442712-4445225:-|nuORF;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	HCT116MG_D190212_S2	2	399.9219055175781	3	399.922801	1196.74657	-0.045089	-1.8032E-05	-0.78087	-0.00031229	-0.82596	-0.00033032	399.92239704100837	55.118	0.61091	54.93	54.662	55.273	-0.18797					26	11	3	0	0	0	0.88076	1	21221	21221		1.5923	0	1	42331000			17587	3182	10796	10853	16885	16885					0.15606984919463684
KRPPTSKGS	9	Unmodified	_KRPPTSKGS_					0	0	0			REV__ENSG00000109458|ENST00000262994|GAB1	REV__ENSG00000109458|ENST00000262994|GAB1	MULTI-MSMS	HCT116MG_D190212_S1	1	479.27789306640625	2	479.277441	956.540328	0.15459	7.4093E-05	0.040973	1.9638E-05	0.19557	9.3731E-05	479.27737571230136	45.139	1.7767	45.139	44.25	46.027	0					81	33	3	0	0	0	0.75193	1	17340	17340		1.6526	0.17072	1	47070000	+		17588	11371	10797	10854	16886	16886					0.06031992020336929
KRPPTSKGS	9	Unmodified	_KRPPTSKGS_					0	0	0			REV__ENSG00000109458|ENST00000262994|GAB1	REV__ENSG00000109458|ENST00000262994|GAB1	MSMS	HCT116MG_D190212_S4	4	479.2767639160156	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.469	1	46.098	45.598	46.598	-0.37134								0	0	0	0.76818	1	17157	17157		7.2892	2.0586	1		+		17589	11371	10797	10854	16887	16887					0.06031992020336929
KRPVGMLV	8	Unmodified	_KRPVGMLV_					0	0	0		HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant;HIVEP2|p.E2269Sfs*37|1|0.07|ENSG00000010818|chr6:142753643-142753643|C/-|frameshift_variant;HIVEP2|p.N2325Kfs*44|1|0.35|ENSG00000010818|chr6:142753473-142753474|-/T|frameshift_variant;ENSG00000010818|ENST00000367603|HIVEP2	HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant	HIVEP2|p.S1616Afs*32|1|0.48|ENSG00000010818|chr6:142769894-142769894|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	450.2801513671875	2	450.278398	898.542243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.299	1	47.299	46.799	47.799	0								0	0	0	0.8837	1	17968	17968		2.5775	0	1				17590	884	10798	10855	16888	16888					0.08891329504592704
KRQEAIFEL	9	Unmodified	_KRQEAIFEL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	HCT116MG_D190212_S1	1	567.3196411132812	2	567.319306	1132.62406	0.44419	0.000252	-0.32839	-0.0001863	0.11581	6.5699E-05	567.3192221517612	46.673	0.25916	46.673	46.492	46.751	0					7	4	2	0	0	0	0.026999	1	17731	17731		89.401	26.828	1	18712000			17591	4654	10799	10856	16889	16889					0.06305103397380662
KRQEAIFEL	9	Unmodified	_KRQEAIFEL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	HCT116MG_D190212_S2	2	567.8207397460938	2	567.319306	1132.62406	0.77257	0.00043829	-0.10663	-6.0492E-05	0.66594	0.0003778	567.3192005859108	46.659	0.25702	46.548	46.369	46.626	-0.11121					12	4	3	0	0	0	0.0062667	1	17769	17769		126.57	51.637	1	54264000			17592	4654	10799	10856	16890	16890					0.06305103397380662
KRQEAIFEL	9	Unmodified	_KRQEAIFEL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	HCT116MG_D190212_S2	2	378.54852294921875	3	378.548629	1132.62406	0.19692	7.4544E-05	-0.091962	-3.4812E-05	0.10496	3.9732E-05	378.54861118395297	46.629	0.25724	46.518	46.42	46.677	-0.11122					9	4	3	0	0	0	0.24895	1	17787	17787		27.223	5.6331	1	12940000			17593	4654	10799	10856	16891	16891					0.06305103397380662
KRQGFQEN	8	Unmodified	_KRQGFQEN_					0	0	0		nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1;ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	MSMS	HCT116MG_D190212_S4	4	503.7754211425781	2	503.756872	1005.49919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.904	1	21.686	21.186	22.186	-0.21832								0	0	0	0.77419	1	7589	7589		24.674	5.4169	1				17594	9363	10800	10857	16892	16892					-0.0033376901915289636
KRQLNGGP	8	Unmodified	_KRQLNGGP_					0	0	0		LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant;ENSG00000011376|ENST00000645846|LARS2	LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	435.2532958984375	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.077	1	17.077	16.577	17.577	0								0	0	0	0.8837	1	5789	5789		9.3474	0	1				17595	892	10801	10858	16893	16893					0.04839453677379879
KRREKRRMTIW	11	Unmodified	_KRREKRRMTIW_					0	0	0			REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	MSMS	HCT116MG_D190212_S1	1	780.4595336914062	2	780.45681	1558.89907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.45	1	46.45	45.95	46.95	0								0	0	0	0.96149	1	17624	17624		0.30703	0.30703	1		+		17596	15714	10802	10859	16894	16894					0.1419743732456027
KRREKRRMTIW	11	Unmodified	_KRREKRRMTIW_					0	0	0			REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	MSMS	HCT116MG_D190212_S1	1	780.4591064453125	2	780.45681	1558.89907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.884	1	47.884	47.384	48.384	0								0	0	0	0.96149	1	18205	18205		0.30703	0	1		+		17597	15714	10802	10859	16895	16895					0.1419743732456027
KRREKRRMTIW	11	Unmodified	_KRREKRRMTIW_					0	0	0			REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	MSMS	HCT116MG_D190212_S1	1	780.4594116210938	2	780.45681	1558.89907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.008	1	49.008	48.508	49.508	0								0	0	0	0.96149	1	18663	18663		0.30703	0.03801	1		+		17598	15714	10802	10859	16896	16896					0.1419743732456027
KRREKRRMTIW	11	Unmodified	_KRREKRRMTIW_					0	0	0			REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	MSMS	HCT116MG_D190212_S1	1	780.4595336914062	2	780.45681	1558.89907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.188	1	52.188	51.688	52.688	0								0	0	0	0.96149	1	19955	19955		0.30703	0.03801	1		+		17599	15714	10802	10859	16897	16897					0.1419743732456027
KRREKRRMTIW	11	Unmodified	_KRREKRRMTIW_					0	0	0			REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	MSMS	HCT116MG_D190212_S3	3	780.4586791992188	2	780.45681	1558.89907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.405	1	49.089	48.589	49.589	-0.31596								0	0	0	0.96149	1	18604	18604		0.30703	0.30703	1		+		17600	15714	10802	10859	16898	16898					0.1419743732456027
KRREKRRMTIW	11	Unmodified	_KRREKRRMTIW_					0	0	0			REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	REV__ENST00000451818.2_1_1:203626749-203626869:-|nuORF	MSMS	HCT116MG_D190212_S4	4	780.4591064453125	2	780.45681	1558.89907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.382	1	49.02	48.52	49.52	-0.36213								0	0	0	0.96149	1	18315	18315		0.30703	0.30703	1		+		17601	15714	10802	10859	16899	16899					0.1419743732456027
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	782.6554565429688	2	782.47438	1562.93421	0.92186	0.00072133	0.18706	0.00014637	1.1089	0.0008677	782.4745826573518	52.861	0.30902	52.861	52.639	52.948	0					9	5	2	0	0	0	0.74191	1	20222	20222		0	0	1	11855000			17602	4452	10803	10860	16900	16900					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	522.319580078125	3	521.985346	1562.93421	0.47668	0.00024882	-0.51813	-0.00027046	-0.041448	-2.1635E-05	522.3194185120032	52.849	0.25765	52.849	52.69	52.948	0					8	4	2	0	0	0	0.74191	1	20225	20225		0	0	1	11591000			17603	4452	10803	10860	16901	16901					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	522.3200073242188	3	521.985346	1562.93421	0.50005	0.00026102	-0.20585	-0.00010745	0.2942	0.00015357	521.9851838080316	53.642	0.82336	53.642	52.999	53.822	0					28	15	2	0	0	0	0.74191	1	20490	20490		0	0	1	170730000			17604	4452	10803	10860	16902	16902					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	782.4752197265625	2	782.47438	1562.93421	0.94465	0.00073916	-0.027129	-2.1227E-05	0.91752	0.00071794	782.4741905507913	53.589	0.82336	53.589	52.999	53.822	0					49	15	5	0	0	0	0.74191	1	20508	20508		0.26902	0.26902	1	224530000			17605	4452	10803	10860	16903	16903					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	782.475341796875	2	782.47438	1562.93421	0.92675	0.00072516	0.072435	5.6678E-05	0.99918	0.00078183	782.4742863114448	55.182	2.3088	54.994	53.482	55.791	-0.18797					141	44	5	0	0	0	0.74191	1	20732	20732		0.30703	0.30703	1	783200000			17606	4452	10803	10860	16904	16904					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	521.9852905273438	3	521.985346	1562.93421	0.3493	0.00018233	0.24699	0.00012893	0.5963	0.00031126	521.9853776270156	55.182	2	54.994	53.689	55.689	-0.18797					126	38	5	0	0	0	0.74191	1	21511	21511		0.094841	0.011491	1	522390000			17607	4452	10803	10860	16905	16905					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	521.9856567382812	3	521.985346	1562.93421	0.33535	0.00017505	-0.050925	-2.6582E-05	0.28442	0.00014846	521.9851571229366	55.32	1.1591	55.028	54.195	55.354	-0.2918					42	21	3	0	0	0	0.74191	1	20925	20925		0	0	1	4587000			17608	4452	10803	10860	16906	16906					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	782.4747314453125	2	782.47438	1562.93421	0.97321	0.00076151	-0.056517	-4.4223E-05	0.91669	0.00071729	782.474194592987	54.615	0.6252	54.292	53.984	54.609	-0.32348					24	11	3	0	0	0	0.74191	2	20392	20392;20464		0.30703	0.03801	1	8129500			17609	4452	10803	10860	16907;16908	16907					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	782.474853515625	2	782.47438	1562.93421	0.99939	0.000782	-0.060292	-4.7177E-05	0.9391	0.00073482	782.4741417090144	55.354	0.93794	55.036	54.458	55.396	-0.31774					50	17	4	0	0	0	0.74191	1	20635	20635		0	0	1	23479000			17610	4452	10803	10860	16909	16909					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENST00000578653.1_1_17:27849339-27857712:+|nuORF;ENSG00000160551|ENST00000261716|TAOK1	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	782.47438	1562.93421	0.68608	0.00053684	0.039202	3.0675E-05	0.72528	0.00056752	782.4743513958003	55.349	0.79145	55.057	54.508	55.3	-0.2918	0.02809	2.0498E-05	NaN	0.30703	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6799000			17611	4452	10803	10860							0.17525816176703302
KRREVEERSD	10	Unmodified	_KRREVEERSD_					0	0	0			REV__GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant	REV__GNL1|p.P258Lfs*14|1|0.32|ENSG00000204590|chr6:30553387-30553387|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	652.337890625	2	652.339289	1302.66403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.383	1	34.089	33.589	34.589	-0.29419								0	0	0	0.95511	1	12654	12654		1.4819	0	1		+		17612	14202	10804	10861	16910	16910					0.02479998329999944
KRRHKPRRA	9	Unmodified	_KRRHKPRRA_					0	0	0		nc|ENSG00000272395|K9M1U5-4|IFNL4;nc|ENSG00000272395|K9M1U5-3|IFNL4;nc|ENSG00000272395|K9M1U5|IFNL4	nc|ENSG00000272395|K9M1U5-4|IFNL4	nc|ENSG00000272395|K9M1U5-4|IFNL4	MSMS	HCT116MG_D190212_S1	1	402.2598876953125	3	402.258518	1203.75372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.776	1	32.776	32.276	33.276	0								0	0	0	0.76995	1	12106	12106		1.0715	0.44464	1				17613	9660	10805	10862	16911	16911					0.1599976231054825
KRRIGGLL	8	Unmodified	_KRRIGGLL_					0	0	0			REV__ENST00000571688.5_2_16:11643218-11643479:-|nuORF	REV__ENST00000571688.5_2_16:11643218-11643479:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	912.6104125976562	1	912.610146	911.602869	0.75022	0.00068466	0.044616	4.0717E-05	0.79483	0.00072537	912.6099560844685	58.438	0.40504	58.438	58.261	58.666	0					12	7	2	0	0	0	0.88026	1	22545	22545		0	0	1	29007000	+		17614	16577	10806	10863	16912	16912					0.14353182879199267
KRRKKARAL	9	Unmodified	_KRRKKARAL_					0	0	0		ENST00000294981.8_1_1:206905793-206906060:+|nuORF;ENSG00000162889|ENST00000367103|MAPKAPK2	ENST00000294981.8_1_1:206905793-206906060:+|nuORF	ENST00000294981.8_1_1:206905793-206906060:+|nuORF	MSMS	HCT116MG_D190212_S4	4	376.248046875	3	376.259636	1125.75708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.714	1	55.402	54.902	55.902	-0.312								0	0	0	0.77018	1	20869	20869		0.26902	0	1				17615	4564	10807	10864	16913	16913					0.19923012364529313
KRRKKKVLKSK	11	Unmodified	_KRRKKKVLKSK_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MSMS	HCT116MG_D190212_S3	3	699.9926147460938	2	699.990812	1397.96707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.873	1	41.571	41.071	42.071	-0.30257								0	0	0	0.96208	1	15581	15581		0	0	1				17616	9493	10808	10865	16914	16914					0.28400630246869696
KRRKLLLLLKP	11	Unmodified	_KRRKLLLLLKP_					0	0	0		ENST00000416673.6_1_2:114369763-114384446:-|nuORF	ENST00000416673.6_1_2:114369763-114384446:-|nuORF	ENST00000416673.6_1_2:114369763-114384446:-|nuORF	MSMS	HCT116MG_D190212_S1	1	689.4926147460938	2	689.492656	1376.97076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.941	1	36.941	36.441	37.441	0								0	0	0	0.96141	1	13786	13786		0.35063	0	1				17617	7759	10809	10866	16915	16915					0.2973530002072948
KRRKVKFGE	9	Unmodified	_KRRKVKFGE_					0	0	0			REV__ANK3|p.T4364Rfs*75|1|0.3|ENSG00000151150|chr10:60042735-60042735|T/-|frameshift_variant	REV__ANK3|p.T4364Rfs*75|1|0.3|ENSG00000151150|chr10:60042735-60042735|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	574.3588256835938	2	574.356557	1146.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.882	1	63.766	63.266	64.266	-0.11586								0	0	0	0.7701	1	24755	24755		0.52476	0.066424	1		+		17618	9935	10810	10867	16916	16916					0.13107910999428896
KRRLICFPRK	10	Unmodified	_KRRLICFPRK_					0	0	0		CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant	CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant	CFAP43|p.S792Afs*19|1|0.25|ENSG00000197748|chr10:104179848-104179848|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	439.9429626464844	3	439.608048	1315.80231	0.14568	6.4044E-05	1.0086	0.00044339	1.1543	0.00050743	439.60849484793596	50.528	0.78023	50.357	49.985	50.765	-0.1719					24	14	2	0	0	0	0.89149	1	19394	19394		0.69767	0.19171	1	14493000			17619	415	10811	10868	16917	16917					0.15704494835404148
KRRQRYRRQNR	11	Unmodified	_KRRQRYRRQNR_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MSMS	HCT116MG_D190212_S4	4	808.9779663085938	2	808.975079	1615.9356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.519	1	14.358	13.858	14.858	-0.16089								0	0	0	0.96208	1	4606	4606		0	0	1		+		17620	12304	10812	10869	16918	16918					0.15227450265479092
KRRRFVWTFWR	11	Unmodified	_KRRRFVWTFWR_					0	0	0		ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	MSMS	HCT116MG_D190212_S3	3	819.4691772460938	2	819.468035	1636.92152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.154	1	57.885	57.385	58.385	-0.26932								0	0	0	0.96208	1	22116	22116		0	0	1				17621	8227	10813	10870	16919	16919					0.12853404784482336
KRRRGPYP	8	Unmodified	_KRRRGPYP_					0	0	0		ENST00000546309.6_1_6:18155580-18215302:+|nuORF	ENST00000546309.6_1_6:18155580-18215302:+|nuORF	ENST00000546309.6_1_6:18155580-18215302:+|nuORF	MSMS	HCT116MG_D190212_S1	1	515.3076782226562	2	515.306867	1028.59918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.811	1	15.811	15.311	16.311	0								0	0	0	0.8837	1	5279	5279		9.3474	0	1				17622	8725	10814	10871	16920	16920					0.08602513105302023
KRRRKLTKRLK	11	Unmodified	_KRRRKLTKRLK_					0	0	0			REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF	REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF	MSMS	HCT116MG_D190212_S4	4	742.0136108398438	2	742.01261	1482.01067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.298	1	51.953	51.453	52.453	-0.34538								0	0	0	0.95954	1	19492	19492		1.3295	0	1		+		17623	16783	10815	10872	16921	16921					0.28894239743999606
KRRRKRKWQR	10	Unmodified	_KRRRKRKWQR_					0	0	0		ENST00000418635.6_1_6:35378793-35391776:+|nuORF;ENST00000360694.7_1_6:35378793-35389621:+|nuORF	ENST00000418635.6_1_6:35378793-35391776:+|nuORF	ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	749.4777221679688	2	749.476726	1496.9389	0.70958	0.00053181	0.12537	9.3963E-05	0.83495	0.00062578	749.4767781004107	60.957	2.6878	60.957	60.129	62.817	0					161	51	4	0	0	0	0.89372	3	23562	23562;23794;24259		0.45834	0.45834	1	89189000			17624	7355	10816	10873	16922;16923;16924	16922					0.2103074511014711
KRRRRKWKWMR	11	Unmodified	_KRRRRKWKWMR_					0	0	0		PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	563.0081176757812	3	563.007316	1686.00012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.17	1	49.17	48.67	49.67	0								0	0	0	0.96208	1	18728	18728		0	0	1				17625	9788	10817	10874	16925	16925					0.18455933817926962
KRRRRRKKQV	10	Unmodified	_KRRRRRKKQV_					0	0	0		ENST00000474534.1_1_9:131798902-131809484:+|nuORF;nc|ENSG00000148343|Q7L4E1-2|MIGA2;nc|ENSG00000148343|Q7L4E1-3|MIGA2;ENSG00000148343|ENST00000684074|MIGA2	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	MSMS	HCT116MG_D190212_S3	3	705.9692993164062	2	705.971277	1409.928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.585	1	61.346	60.846	61.846	-0.2387								0	0	0	0.96937	1	23508	23508		0.40072	0.093686	1				17626	8188	10818	10875	16926	16926					0.23943342735856277
KRSKKLSHQ	9	Unmodified	_KRSKKLSHQ_					0	0	0			REV__ENSG00000163545|ENST00000367157|NUAK2	REV__ENSG00000163545|ENST00000367157|NUAK2	MSMS	HCT116MG_D190212_S4	4	371.2276306152344	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.232	1	40.855	40.355	41.355	-0.37732								0	0	0	0.76966	1	15156	15156		2.086	1.1237	1		+		17627	12931	10819	10876	16927	16927					0.11127034102696598
KRSNQLTV	8	Unmodified	_KRSNQLTV_					0	0	0		ENST00000263636.4_1_2:160690662-160692029:-|nuORF	ENST00000263636.4_1_2:160690662-160692029:-|nuORF	ENST00000263636.4_1_2:160690662-160692029:-|nuORF	MSMS	HCT116MG_D190212_S1	1	473.25384521484375	2	473.277441	944.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.851	1	29.851	29.351	30.351	0								0	0	0	0.8837	1	10926	10926		10.824	1.4408	1				17628	6881	10820	10877	16928	16928					0.06583992020330243
KRSNYITRL	9	Unmodified	_KRSNYITRL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	HCT116MG_D190212_S1	1	384.228515625	3	384.22789	1149.66184	-0.15869	-6.0973E-05	1.2678	0.00048713	1.1091	0.00042616	384.228547872574	27.012	0.20782	27.012	26.918	27.125	0					5	3	2	0	0	0	0.22528	1	9808	9808		30.431	17.559	1	8152600			17629	1474	10821	10878	16929	16929					0.09299614382825894
KRSNYITRL	9	Unmodified	_KRSNYITRL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.R1657Mfs*13|1|0.21|ENSG00000086758|chrX:53585043-53585044|-/A|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	HCT116MG_D190212_S2	2	384.22802734375	3	384.22789	1149.66184	0.043931	1.688E-05	0.18082	6.9475E-05	0.22475	8.6355E-05	384.2278951200817	27.611	0.25904	27.269	27.139	27.398	-0.34201					10	4	3	0	0	0	0.1935	1	10058	10058		32.898	15.455	1	75806000			17630	1474	10821	10878	16930	16930					0.09299614382825894
KRSTYNYSL	9	Unmodified	_KRSTYNYSL_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	HCT116MG_D190212_S1	1	566.2925415039062	2	566.293288	1130.57202	0.38447	0.00021772	-0.52382	-0.00029663	-0.13935	-7.8913E-05	566.2928633291706	30.321	0.35693	30.321	30.146	30.503	0					13	6	3	0	0	0	0.02327	1	11128	11128		93.166	29.205	1	13494000			17631	4013	10822	10879	16931	16931					0.011959399836086959
KRSTYNYSL	9	Unmodified	_KRSTYNYSL_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	HCT116MG_D190212_S2	2	566.29345703125	2	566.293288	1130.57202	0.27651	0.00015659	0.054697	3.0975E-05	0.33121	0.00018756	566.2933993271245	30.747	0.36114	30.48	30.251	30.612	-0.26704					13	6	3	0	0	0	0.0096523	1	11319	11319		114.2	43.87	1	67308000			17632	4013	10822	10879	16932	16932					0.011959399836086959
KRTARHRRRKQ	11	Unmodified	_KRTARHRRRKQ_					0	0	0			REV__ENSG00000155269|ENST00000382487|GPR78	REV__ENSG00000155269|ENST00000382487|GPR78	MULTI-MSMS	HCT116MG_D190212_S2	2	498.3105773925781	3	498.310052	1491.90833	0.26107	0.0001301	0.077729	3.8733E-05	0.3388	0.00016883	498.31000719576946	53.47	1.4452	53.28	52.242	53.687	-0.1894					86	27	4	0	0	0	0.74191	1	20292	20292		1.1098	1.1098	1	104090000	+		17633	12698	10823	10880	16933	16933					0.18204966725102167
KRTHQRRAHLR	11	Unmodified	_KRTHQRRAHLR_					0	0	0			REV__POM121|p.Q1240H|1|0.13|ENSG00000196313|chr7:72946204-72946204|G/T|missense_variant	REV__POM121|p.Q1240H|1|0.13|ENSG00000196313|chr7:72946204-72946204|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	486.9595947265625	3	486.95902	1457.85523	-0.008818	-4.294E-06	0.27556	0.00013419	0.26674	0.00012989	487.2933838045664	54.748	2.0839	54.425	53.046	55.13	-0.32349					86	39	4	0	0	0	0.74191	1	20130	20130		0.40827	0.40827	1	27323000	+		17634	17433	10824	10881	16934	16934					0.14461588942458548
KRVGLIHML	9	Unmodified	_KRVGLIHML_					0	0	0		ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENST00000524832.5_1_11:882499-902261:-|nuORF	ENST00000524832.5_1_11:882499-902261:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	356.2231750488281	3	356.223311	1065.6481	-0.16718	-5.9554E-05	-0.47578	-0.00016948	-0.64296	-0.00022904	356.22306803301467	38.916	0.20676	38.831	38.702	38.909	-0.084618					5	3	2	0	0	0	0.069315	1	14642	14642		65.235	25.285	1	51869000			17635	5473	10825	10882	16935	16935					0.11790665350054041
KRVITILQNP	10	Unmodified	_KRVITILQNP_					0	0	0		THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|37|3|sense	THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|37|3|sense	THE1B-int_dup1996|chr7:8345870-8347393:+|1.2346957743909006|0.2358979979729452|2.39|457.0|37|3|sense	MSMS	HCT116MG_D190212_S1	1	591.3718872070312	2	591.371872	1180.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.411	1	34.411	33.911	34.911	0								0	0	0	0.94107	1	12767	12767		6.7232	0.51738	1				17636	18268	10826	10883	16936	16936					0.14605644593825673
KRVKKKKKKKG	11	Unmodified	_KRVKKKKKKKG_					0	0	0			REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MSMS	HCT116MG_D190212_S3	3	678.4849853515625	2	678.487905	1354.96126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.393	1	44.085	43.585	44.585	-0.30759								0	0	0	0.96149	1	16594	16594		0.30703	0	1		+		17637	15661	10827	10884	16937	16937					0.29797531735175653
KRVTWIVEF	9	Unmodified	_KRVTWIVEF_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	HCT116MG_D190212_S2	2	589.3408203125	2	589.340041	1176.66553	0.44311	0.00026114	0.60736	0.00035794	1.0505	0.00061908	589.3404520084994	53.433	0.46304	53.244	53.069	53.532	-0.18938					15	8	3	0	0	0	0.0080847	1	20555	20555		118.07	76.229	1	36612000			17638	6415	10828	10885	16938	16938					0.0842628415668969
KRVVRIKSL	9	Unmodified	_KRVVRIKSL_					0	0	0			REV__ENST00000433284.1_1_22:49609931-49610129:-|nuORF	REV__ENST00000433284.1_1_22:49609931-49610129:-|nuORF	MSMS	HCT116MG_D190212_S3	3	550.2306518554688	2	549.877125	1097.7397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.712	1	49.396	48.896	49.896	-0.31596								0	0	0	0.76694	1	18727	18727		11.64	4.3511	1		+		17639	12156	10829	10886	16939	16939					0.19473672038884615
KRWESERIL	9	Unmodified	_KRWESERIL_					0	0	0		nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2;AP3M2|p.R238C|1|0.09|ENSG00000070718|chr8:42165469-42165469|C/T|missense_variant	nc|ENSG00000070718|P53677-2|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	MULTI-MSMS	HCT116MG_D190212_S2	2	406.23126220703125	3	406.231412	1215.67241	-0.0045502	-1.8484E-06	0.062572	2.5419E-05	0.058021	2.357E-05	406.23137606101	32.043	0.36313	31.813	31.631	31.995	-0.23009					12	6	3	0	0	0	0.020429	1	11848	11848		96.034	40.8	1	61327000			17640	152	10830	10887	16940	16940					0.073195970372808
KRWESERIL	9	Unmodified	_KRWESERIL_					0	0	0		nc|ENSG00000070718|P53677-2|AP3M2;AP3M2|p.V318Sfs*2|1|0.39|ENSG00000070718|chr8:42167308-42167308|G/-|frameshift_variant;ENSG00000070718|ENST00000396926|AP3M2;AP3M2|p.R238C|1|0.09|ENSG00000070718|chr8:42165469-42165469|C/T|missense_variant	nc|ENSG00000070718|P53677-2|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	MULTI-MSMS	HCT116MG_D190212_S2	2	608.84375	2	608.843479	1215.67241	0.71684	0.00043645	0.081574	4.9666E-05	0.79842	0.00048611	608.8433152917441	32.043	0.25914	31.813	31.683	31.942	-0.23009					10	4	3	0	0	0	0.017759	1	11853	11853		107.1	40.643	1	30359000			17641	152	10830	10887	16941	16941					0.073195970372808
KRWESERVL	9	Unmodified	_KRWESERVL_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	HCT116MG_D190212_S1	1	401.5594787597656	3	401.559528	1201.65676	0.05505	2.2106E-05	0.12952	5.2009E-05	0.18457	7.4115E-05	401.55946400824905	28.085	0.31192	28.085	27.904	28.216	0					13	5	4	0	0	0	0.0068427	1	10220	10220		111.31	91.322	1	49246000			17642	5798	10831	10888	16942	16942					0.06399310520237123
KRWESERVL	9	Unmodified	_KRWESERVL_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	HCT116MG_D190212_S1	1	601.835693359375	2	601.835654	1201.65676	0.6219	0.00037428	0.22876	0.00013767	0.85066	0.00051196	601.8357215324818	28.087	0.26009	28.087	27.904	28.164	0					9	4	3	0	0	0	0.037825	1	10225	10225		80.676	51.594	1	25069000			17643	5798	10831	10888	16943	16943					0.06399310520237123
KRWESERVL	9	Unmodified	_KRWESERVL_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	HCT116MG_D190212_S2	2	602.3373413085938	2	601.835654	1201.65676	0.65506	0.00039424	-0.49942	-0.00030057	0.15563	9.3666E-05	601.8352343549849	28.591	0.25587	28.261	28.133	28.389	-0.32987					9	4	3	0	0	0	0.0038512	1	10441	10441		152.89	102.95	1	160530000			17644	5798	10831	10888	16944	16944					0.06399310520237123
KRWESERVL	9	Unmodified	_KRWESERVL_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MSMS	HCT116MG_D190212_S2	2	401.5593566894531	3	401.559528	1201.65676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.601	1	28.271	27.771	28.771	-0.32987								0	0	0	0.0099415	1	10439	10439		97.741	68.304	1				17645	5798	10831	10888	16945	16945					0.06399310520237123
KRWESERVL	9	Unmodified	_KRWESERVL_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MATCH	HCT116MG_D190212_S3	3		3	401.559528	1201.65676	0.041502	1.6666E-05	0.1947	7.8184E-05	0.2362	9.485E-05	401.5595318012209	28.431	0.15646	28.225	28.125	28.281	-0.20593	0.070086	4.7243E-05	NaN	111.31	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2078300			17646	5798	10831	10888							0.06399310520237123
KRWRQLKLRRF	11	Unmodified	_KRWRQLKLRRF_					0	0	0			REV__nc|ENSG00000141219|Q9BSJ5-3|MTNAP1	REV__nc|ENSG00000141219|Q9BSJ5-3|MTNAP1	MSMS	HCT116MG_D190212_S1	1	793.9981689453125	2	793.99696	1585.97937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.038	1	41.038	40.538	41.538	0								0	0	0	0.96208	1	15442	15442		0	0	1		+		17647	17149	10832	10889	16946	16946					0.20981666709894853
KRYDREFLL	9	Unmodified	_KRYDREFLL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	413.89959716796875	3	413.899662	1238.67716	0.078754	3.2596E-05	0.027139	1.1233E-05	0.10589	4.3829E-05	413.8995786846416	40.404	0.25919	40.334	40.157	40.416	-0.069904					10	4	3	0	0	0	0.36033	1	15255	15255		24.882	7.833	1	27298000			17648	2435	10833	10890	16947	16947					0.06736481180041665
KSAITNSNM	9	Unmodified	_KSAITNSNM_					0	0	0			REV__nc|ENSG00000134489|Q9H3N8-2|HRH4	REV__nc|ENSG00000134489|Q9H3N8-2|HRH4	MSMS	HCT116MG_D190212_S3	3	483.2381591796875	2	483.239667	964.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.34	1	33.049	32.549	33.549	-0.29013								0	0	0	0.42657	1	12232	12232		32.305	1.6689	1		+		17649	12058	10834	10891	16948	16948					-0.018873532222642098
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	HCT116MG_D190212_S1	1	487.23468017578125	2	487.234907	972.455261	-0.39665	-0.00019326	-0.021211	-1.0335E-05	-0.41786	-0.0002036	487.23479214874396	38.51	0.36467	38.51	38.332	38.696	0					15	6	3	0	0	0	0.053544	1	14422	14422		72.968	29.11	1	95518000			17650	1990	10835	10892	16949	16949					-0.03206798236146824
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	HCT116MG_D190212_S1	1	973.4620971679688	1	973.462538	972.455261	-0.026772	-2.6061E-05	-0.47805	-0.00046537	-0.50482	-0.00049143	973.4617530407589	38.514	0.20871	38.514	38.384	38.592	0					6	3	2	0	0	0	0.0067688	1	14424	14424		122.18	73.833	1	16658000			17651	1990	10835	10892	16950	16950					-0.03206798236146824
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	HCT116MG_D190212_S2	2	973.462890625	1	973.462538	972.455261	0.58499	0.00056947	-0.048468	-4.7182E-05	0.53652	0.00052228	973.4623276392412	38.553	0.42377	38.469	38.278	38.702	-0.084621					16	7	3	0	0	0	0.0067688	2	14488	14440;14488		122.18	73.833	1	81046000			17652	1990	10835	10892	16951;16952	16952					-0.03206798236146824
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	HCT116MG_D190212_S2	2	487.23516845703125	2	487.234907	972.455261	0.14361	6.9973E-05	0.23706	0.0001155	0.38067	0.00018548	487.2349339479717	38.55	0.52725	38.466	38.278	38.806	-0.084618					23	9	4	0	0	0	0.053544	1	14466	14466		72.968	20.7	1	305270000			17653	1990	10835	10892	16953	16953					-0.03206798236146824
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	487.234907	972.455261	0.035783	1.7435E-05	0.50629	0.00024668	0.54207	0.00026412	487.23497152618154	38.797	0.31218	38.496	38.352	38.664	-0.30137	0.0052768	0.00032341	NaN	72.968	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7662700			17654	1990	10835	10892							-0.03206798236146824
KSDHTDVLYY	10	Unmodified	_KSDHTDVLYY_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	HCT116MG_D190212_S2	2	621.2962646484375	2	620.79586	1239.57717	0.39883	0.00024759	-1.3195	-0.00081916	-0.9207	-0.00057156	620.795696432991	35.53	0.45279	35.387	35.19	35.643	-0.14245					15	8	3	0	0	0	0.40188	2	13243	13243;13248		55.235	34.363	1	36021000			17655	2524	10836	10893	16954;16955	16954					-0.03303800944422619
KSDIYFLIIII	11	Unmodified	_KSDIYFLIIII_					0	0	0		tr|U7SHC1|U7SHC1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02336PE=4SV=1	tr|U7SHC1|U7SHC1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02336PE=4SV=1	tr|U7SHC1|U7SHC1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02336PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	669.4080810546875	2	669.407589	1336.80063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.915	1	56.915	56.415	57.415	0								0	0	0	0.95521	1	21891	21891		3.5965	0	1				17656	18304	10837	10894	16956	16956					0.14569719507835543
KSDLFFHDY	9	Unmodified	_KSDLFFHDY_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	HCT116MG_D190212_S1	1	586.2741088867188	2	586.274564	1170.53457	0.48101	0.000282	-0.17532	-0.00010279	0.30568	0.00017922	586.2743156552864	43.704	0.61724	43.704	43.524	44.141	0					21	11	4	0	0	0	3.8859E-05	1	16517	16517		209.87	147.3	1	276710000			17657	985	10838	10895	16957	16957					-0.043871512820032876
KSDLFFHDY	9	Unmodified	_KSDLFFHDY_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	HCT116MG_D190212_S1	1	391.1852111816406	3	391.185468	1170.53457	-0.20842	-8.1531E-05	-0.075487	-2.9529E-05	-0.28391	-0.00011106	391.51964311462467	43.704	0.25761	43.704	43.575	43.833	0					10	4	3	0	0	0	0.12205	1	16533	16533		42.312	23.939	1	23754000			17658	985	10838	10895	16958	16958					-0.043871512820032876
KSDLFFHDY	9	Unmodified	_KSDLFFHDY_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	HCT116MG_D190212_S2	2	586.27490234375	2	586.274564	1170.53457	0.84174	0.00049349	-0.12209	-7.1577E-05	0.71966	0.00042192	586.2744133253218	43.66	0.66857	43.582	43.35	44.019	-0.078373					22	12	4	0	0	0	0.043159	1	16582	16582		78.06	48.979	1	93809000			17659	985	10838	10895	16959	16959					-0.043871512820032876
KSDLFFHDY	9	Unmodified	_KSDLFFHDY_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MATCH	HCT116MG_D190212_S2	2		3	391.185468	1170.53457	0.48105	0.00018818	-0.22149	-8.6644E-05	0.25956	0.00010153	391.18536625154854	43.66	0.2055	43.582	43.453	43.659	-0.078373	-0.061067	-2.2488E-06	NaN	42.312	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13331000			17660	985	10838	10895							-0.043871512820032876
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S1	1	604.2855224609375	2	604.285128	1206.5557	0.62147	0.00037555	0.13419	8.1087E-05	0.75566	0.00045663	604.2851413438582	26.058	0.46986	26.058	25.823	26.293	0					26	8	5	0	0	0	0.00081196	2	9381	9376;9381		179.28	96.754	1	181120000			17661	6078	10839	10896	16960;16961	16961					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S1	1	403.1925354003906	3	403.192511	1206.5557	0.068155	2.748E-05	-0.049073	-1.9786E-05	0.019082	7.6938E-06	403.1923791756951	26.058	0.31318	26.058	25.875	26.188	0					9	5	2	0	0	0	0.78097	1	9426	9426		8.7518	1.2747	1	7117500			17662	6078	10839	10896	16962	16962					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S2	2	604.285400390625	2	604.285128	1206.5557	0.62735	0.0003791	-0.043028	-2.6001E-05	0.58432	0.0003531	604.2851219890453	26.515	0.51978	26.154	25.921	26.441	-0.36164					38	9	5	0	0	0	0.00022982	1	9567	9567		192.32	128.36	1	1055299999.9999999			17663	6078	10839	10896	16963	16963					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S2	2	403.1924743652344	3	403.192511	1206.5557	-0.16049	-6.4709E-05	0.16947	6.8327E-05	0.0089745	3.6184E-06	403.19249182908345	26.463	0.31115	26.102	25.972	26.284	-0.36164					14	5	3	0	0	0	0.066546	1	9602	9602		62.78	40.005	1	26697000			17664	6078	10839	10896	16964	16964					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S2	2	1207.5633544921875	1	1207.56298	1206.5557	0.43811	0.00052905	0.096619	0.00011667	0.53473	0.00064572	1207.5630512508985	26.463	0.31115	26.102	25.972	26.284	-0.36164					13	5	3	0	0	0	1.2126E-06	1	9603	9603		208.35	160.76	1	25366000			17665	6078	10839	10896	16965	16965					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S3	3	604.2848510742188	2	604.285128	1206.5557	0.67653	0.00040882	-0.05311	-3.2093E-05	0.62342	0.00037672	604.2850384718496	26.222	0.88545	26.072	25.838	26.723	-0.14924					34	16	3	0	0	0	1.0015E-10	1	9383	9383		222.22	139.69	1	203860000			17666	6078	10839	10896	16966	16966					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S3	3	403.1922912597656	3	403.192511	1206.5557	0.12704	5.122E-05	-0.34839	-0.00014047	-0.22136	-8.925E-05	403.1922869896611	26.228	0.31279	26.079	25.942	26.255	-0.14924					12	5	3	0	0	0	0.57664	1	9423	9423		25.997	15.098	1	10774000			17667	6078	10839	10896	16967	16967					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S4	4	604.2852172851562	2	604.285128	1206.5557	1.0624	0.00064201	-0.54277	-0.00032799	0.51967	0.00031403	604.2846116102226	26.56	0.98715	26.26	26.078	27.065	-0.30087					38	18	4	0	0	0	1.0015E-10	1	9449	9449		222.22	149.25	1	55498000			17668	6078	10839	10896	16968	16968					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;PRPF40A|p.Q412Afs*4|1|0.16|ENSG00000196504|chr2:152672596-152672597|-/T|frameshift_variant;PRPF40A|p.K411Sfs*40|2|0.19|ENSG00000196504|chr2:152672597-152672597|T/-|frameshift_variant;ENST00000467114.2_1_2:153535806-153549567:-|nuORF	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	403.192511	1206.5557	0.028022	1.1298E-05	-0.31665	-0.00012767	-0.28863	-0.00011637	403.1926257944575	26.528	0.25992	26.227	26.13	26.389	-0.30087	0.11046	-0.00033277	NaN	62.78	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1616800			17669	6078	10839	10896							-0.039311859731242293
KSDSSGQEY	9	Unmodified	_KSDSSGQEY_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-3|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	HCT116MG_D190212_S1	1	500.71441650390625	2	500.714536	999.414519	0.51287	0.0002568	-0.26702	-0.0001337	0.24585	0.0001231	500.7143946295476	17.072	0.20852	17.072	16.994	17.202	0					5	3	2	0	0	0	0.066823	1	5814	5814		66.457	19.536	1	2803400			17670	3426	10840	10897	16969	16969					-0.08521184346409427
KSDTGKPYYY	10	Unmodified	_KSDTGKPYYY_					0	0	0		ENST00000551111.1_1_12:50027155-50027445:+|nuORF;ENST00000548436.5_1_12:50026868-50028386:+|nuORF;PRPF40B|p.T209Pfs*79|1|0.37|ENSG00000110844|chr12:49633967-49633967|C/-|frameshift_variant;nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	ENST00000551111.1_1_12:50027155-50027445:+|nuORF	ENST00000551111.1_1_12:50027155-50027445:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	611.2933349609375	2	611.292953	1220.57135	0.5695	0.00034813	0.16367	0.00010005	0.73317	0.00044818	611.2930332014328	26.334	0.20862	26.334	26.188	26.397	0					6	3	2	0	0	0	0.5682	1	9533	9533		30.431	16.026	1	4629200			17671	2266	10841	10898	16970	16970					-0.030108994561032887
KSDTGKPYYY	10	Unmodified	_KSDTGKPYYY_					0	0	0		ENST00000551111.1_1_12:50027155-50027445:+|nuORF;ENST00000548436.5_1_12:50026868-50028386:+|nuORF;PRPF40B|p.T209Pfs*79|1|0.37|ENSG00000110844|chr12:49633967-49633967|C/-|frameshift_variant;nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	ENST00000551111.1_1_12:50027155-50027445:+|nuORF	ENST00000551111.1_1_12:50027155-50027445:+|nuORF	MSMS	HCT116MG_D190212_S2	2	611.2930908203125	2	611.292953	1220.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.844	1	26.492	25.992	26.992	-0.35254								0	0	0	0.097201	1	9728	9728		83.278	48.876	1				17672	2266	10841	10898	16971	16971					-0.030108994561032887
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S1	1	561.7822875976562	2	561.782556	1121.55056	0.14216	7.9864E-05	0.25259	0.0001419	0.39475	0.00022176	561.7826388564857	38.983	0.3115	38.983	38.8	39.111	0					19	5	5	0	0	0	7.9025E-11	1	14611	14611		240.95	137.6	1	413010000			17673	1258	10842	10899	16972	16972					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S1	1	375.19140625	3	374.857463	1121.55056	-0.36794	-0.00013792	0.094829	3.5547E-05	-0.27311	-0.00010238	374.85742307895447	39.007	0.25985	39.007	38.851	39.111	0					11	4	3	0	0	0	0.053544	1	14617	14617		59.052	11.32	1	26206000			17674	1258	10842	10899	16973	16973					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S1	1	1122.557861328125	1	1122.55784	1121.55056	0.35388	0.00039726	0.025521	2.8649E-05	0.37941	0.0004259	1122.557907628342	38.981	0.20766	38.981	38.851	39.059	0					5	3	2	0	0	0	0.0064416	1	14633	14633		125.04	36.084	1	16055000			17675	1258	10842	10899	16974	16974					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S2	2	561.78271484375	2	561.782556	1121.55056	0.4716	0.00026494	-0.034296	-1.9267E-05	0.43731	0.00024567	561.7825003508068	38.967	0.51669	38.883	38.702	39.219	-0.084618					32	9	4	0	0	0	0.0035136	1	14632	14632		168.54	99.433	1	1064299999.9999999			17676	1258	10842	10899	16975	16975					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S2	2	374.8572692871094	3	374.857463	1121.55056	-0.14501	-5.4359E-05	0.15216	5.7038E-05	0.0071459	2.6787E-06	374.8574072054676	38.967	0.30999	38.883	38.702	39.012	-0.084618					13	5	3	0	0	0	0.064006	1	14653	14653		55.249	14.524	1	117820000			17677	1258	10842	10899	16976	16976					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S3	3	561.78271484375	2	561.782556	1121.55056	0.40604	0.00022811	0.10004	5.62E-05	0.50608	0.00028431	561.7825335081585	39.251	0.47527	38.95	38.664	39.14	-0.30137					19	8	4	0	0	0	0.0029864	1	14569	14569		181.69	107.27	1	88768000			17678	1258	10842	10899	16977	16977					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S3	3	374.857666015625	3	374.857463	1121.55056	-0.060182	-2.256E-05	-0.34477	-0.00012924	-0.40495	-0.0001518	374.8573621525976	39.251	0.26672	38.95	38.82	39.087	-0.30137					7	4	2	0	0	0	0.20983	1	14582	14582		31.636	3.4021	1	10422000			17679	1258	10842	10899	16978	16978					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S4	4	561.783203125	2	561.782556	1121.55056	0.2628	0.00014764	0.47442	0.00026652	0.73722	0.00041416	561.782788535742	39.437	0.21522	39.057	38.884	39.1	-0.38055					12	4	3	0	0	0	0.0050238	1	14474	14474		137.42	72.189	1	10358000			17680	1258	10842	10899	16979	16979					-0.005354450451022785
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S1	1	573.2776489257812	2	573.277303	1144.54005	0.36887	0.00021147	0.11236	6.4415E-05	0.48124	0.00027588	573.277337579935	22.089	0.36547	22.089	21.906	22.272	0					21	6	5	0	0	0	0.0034966	1	7790	7790		166.77	89.944	1	181510000			17681	1469	10843	10900	16980	16980					-0.026434724901946538
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S1	1	382.8548583984375	3	382.520628	1144.54005	-0.12433	-4.7559E-05	0.11543	4.4156E-05	-0.0088969	-3.4033E-06	382.52064411159296	22.089	0.3133	22.089	21.906	22.22	0					11	5	3	0	0	0	0.026272	1	7809	7809		83.278	51.642	1	26230000			17682	1469	10843	10900	16981	16981					-0.026434724901946538
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S2	2	573.27734375	2	573.277303	1144.54005	0.42883	0.00024584	-0.082649	-4.7381E-05	0.34618	0.00019846	573.2772138752664	22.617	0.62305	22.232	22.051	22.674	-0.3852					27	11	3	0	0	0	6.4556E-08	1	8022	8022		220.1	131.14	1	445250000			17683	1469	10843	10900	16982	16982					-0.026434724901946538
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S2	2	382.5204772949219	3	382.520628	1144.54005	-0.037584	-1.4377E-05	-0.089881	-3.4381E-05	-0.12747	-4.8758E-05	382.52060475094413	22.632	0.31149	22.247	22.103	22.414	-0.3852					14	5	4	0	0	0	0.0201	1	8043	8043		88.364	54.142	1	46914000			17684	1469	10843	10900	16983	16983					-0.026434724901946538
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S2	2	1145.5474853515625	1	1145.54733	1144.54005	0.60765	0.00069609	0.24397	0.00027948	0.85162	0.00097557	1145.5472386816577	22.669	0.20778	22.284	22.154	22.362	-0.3852					7	3	3	0	0	0	0.0010417	1	8048	8048		192.32	119.35	1	23245000			17685	1469	10843	10900	16984	16984					-0.026434724901946538
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S3	3	573.2777099609375	2	573.277303	1144.54005	0.46169	0.00026467	0.17493	0.00010028	0.63661	0.00036496	573.2773428755145	21.911	0.46864	21.912	21.781	22.25	0.00074577					20	8	3	0	0	0	0.0034966	1	7661	7661		166.77	81.128	1	54458000			17686	1469	10843	10900	16985	16985					-0.026434724901946538
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S3	3	382.52056884765625	3	382.520628	1144.54005	-0.072905	-2.7888E-05	0.11874	4.5419E-05	0.045832	1.7532E-05	382.5205830139531	21.955	0.2604	21.956	21.781	22.042	0.00074577					11	4	4	0	0	0	0.030039	1	7686	7686		79.427	56.652	1	9285800			17687	1469	10843	10900	16986	16986					-0.026434724901946538
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	HCT116MG_D190212_S4	4	573.27783203125	2	573.277303	1144.54005	0.49468	0.00028359	-0.033195	-1.903E-05	0.46148	0.00026456	573.277234440198	22.345	0.31155	22.117	21.936	22.247	-0.22777					10	5	3	0	0	0	0.0034966	1	7768	7768		166.77	88.041	1	10880000			17688	1469	10843	10900	16987	16987					-0.026434724901946538
KSEDGRLIY	9	Unmodified	_KSEDGRLIY_					0	0	0		ENST00000520167.5_1_8:74888148-74891330:+|nuORF;nc|ENSG00000175606|Q9BUB7-3|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	ENST00000520167.5_1_8:74888148-74891330:+|nuORF	ENST00000520167.5_1_8:74888148-74891330:+|nuORF	MSMS	HCT116MG_D190212_S2	2	540.78759765625	2	540.787838	1079.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.359	1	30.075	29.575	30.575	-0.28453								0	0	0	0.36226	1	11158	11158		35.612	10.213	1				17689	5390	10844	10901	16988	16988					0.024525376093379236
KSEKELKNRRK	11	Unmodified	_KSEKELKNRRK_					0	0	0		ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A	ENST00000480032.4_1_2:166152333-166226884:+|nuORF	ENST00000480032.4_1_2:166152333-166226884:+|nuORF	MSMS	HCT116MG_D190212_S2	2	472.7868347167969	3	472.619558	1414.83684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.643	1	56.46	55.96	56.96	-0.18261								0	0	0	0.95705	1	21858	21858		2.6312	0.88896	1				17690	3421	10845	10902	16989	16989					0.14601989457196396
KSELGLNFY	9	Unmodified	_KSELGLNFY_					0	0	0		ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	MULTI-MSMS	HCT116MG_D190212_S2	2	535.7802734375	2	535.779482	1069.54441	0.096979	5.1959E-05	-1.6617	-0.00089028	-1.5647	-0.00083832	535.7797366386696	49.833	0.25462	49.67	49.483	49.737	-0.16369					9	4	3	0	0	0	0.090581	1	19091	19091		60.074	15.667	1	35622000			17691	6284	10846	10903	16990	16990					0.0124203672337444
KSELGLNFY	9	Unmodified	_KSELGLNFY_					0	0	0		ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	MULTI-MATCH	HCT116MG_D190212_S1	1		2	535.779482	1069.54441	0.31801	0.00017039	-1.382	-0.00074043	-1.0639	-0.00057004	535.779776178256	49.636	0.15546	49.636	49.543	49.699	0	-0.016581	0.00025697	NaN	60.074	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7031700			17692	6284	10846	10903							0.0124203672337444
KSEMNVNMKY	10	Unmodified	_KSEMNVNMKY_					0	0	0		nc|ENSG00000105976|P08581-3|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-3|MET	MULTI-MSMS	HCT116MG_D190212_S2	2	622.2938842773438	2	622.294116	1242.57368	0.17857	0.00011112	0.35428	0.00022047	0.53285	0.00033159	622.2938978165329	30.374	0.20534	30.089	29.976	30.182	-0.28453					5	3	2	0	0	0	0.032937	1	11196	11196		99.864	61.689	1	33754000			17693	2050	10847	10904	16991	16991					-0.03790510314297535
KSETRQENY	9	Unmodified	_KSETRQENY_					0	0	0		nc|ENSG00000148356|Q6UWE0-3|LRSAM1;ENST00000483302.5_1_9:130248105-130265175:+|nuORF;nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-3|LRSAM1	nc|ENSG00000148356|Q6UWE0-3|LRSAM1	MULTI-MSMS	HCT116MG_D190212_S1	1	577.7756958007812	2	577.775459	1153.53637	0.45744	0.0002643	-0.089502	-5.1712E-05	0.36794	0.00021259	577.7753926792979	15.822	0.26022	15.822	15.692	15.952	0					6	4	2	0	0	0	0.019537	1	5291	5291		96.936	43.103	1	8021400			17694	4019	10848	10905	16992	16992					-0.0342614226403839
KSETRQENY	9	Unmodified	_KSETRQENY_					0	0	0		nc|ENSG00000148356|Q6UWE0-3|LRSAM1;ENST00000483302.5_1_9:130248105-130265175:+|nuORF;nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-3|LRSAM1	nc|ENSG00000148356|Q6UWE0-3|LRSAM1	MSMS	HCT116MG_D190212_S2	2	577.7765502929688	2	577.775459	1153.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.145	1	15.811	15.311	16.311	-0.33451								0	0	0	0.038892	1	5414	5414		74.2	30.341	1				17695	4019	10848	10905	16993	16993					-0.0342614226403839
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	HCT116MG_D190212_S1	1	569.3549194335938	2	569.2844	1136.55425	0.28035	0.0001596	0.40546	0.00023082	0.68581	0.00039042	569.2845106064304	57.386	0.15582	57.386	57.256	57.412	0					6	2	3	0	0	0	0.2336	1	22083	22083		22.736	4.6013	1	38460000			17696	3710	10849	10906	16994	16994					-0.008567752712451693
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2847900390625	2	569.2844	1136.55425	0.47873	0.00027254	0.28061	0.00015974	0.75934	0.00043228	569.2844656924881	57.568	0.25828	57.393	57.263	57.521	-0.17494					11	4	3	0	0	0	0.39784	1	22252	22252		22.736	3.4793	1	174340000			17697	3710	10849	10906	16995	16995					-0.008567752712451693
KSFSLLIKTL	10	Unmodified	_KSFSLLIKTL_					0	0	0		HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|370|3|anti-sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|370|3|anti-sense	HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|370|3|anti-sense	MSMS	HCT116MG_D190212_S1	1	575.3640747070312	2	575.365724	1148.7169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.015	1	47.015	46.515	47.515	0								0	0	0	0.94925	1	17853	17853		4.897	1.6157	1				17698	9218	10850	10907	16996	16996					0.14848608130773755
KSGNSGSMVNT	11	Unmodified	_KSGNSGSMVNT_					0	0	0			REV__ENSG00000170502|ENST00000302174|NUDT9	REV__ENSG00000170502|ENST00000302174|NUDT9	MSMS	HCT116MG_D190212_S1	1	361.1704406738281	3	361.169601	1080.48697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.946	1	61.946	61.446	62.446	0								0	0	0	0.95731	1	23911	23911		1.0136	0.051299	1		+		17699	13305	10851	10908	16997	16997					-0.05005173544486752
KSGNSGSMVNT	11	Unmodified	_KSGNSGSMVNT_					0	0	0			REV__ENSG00000170502|ENST00000302174|NUDT9	REV__ENSG00000170502|ENST00000302174|NUDT9	MSMS	HCT116MG_D190212_S1	1	361.1705322265625	3	361.169601	1080.48697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.541	1	62.541	62.041	63.041	0								0	0	0	0.95731	1	24151	24151		1.0136	0.051299	1		+		17700	13305	10851	10908	16998	16998					-0.05005173544486752
KSGNSGSMVNT	11	Unmodified	_KSGNSGSMVNT_					0	0	0			REV__ENSG00000170502|ENST00000302174|NUDT9	REV__ENSG00000170502|ENST00000302174|NUDT9	MSMS	HCT116MG_D190212_S1	1	361.1706848144531	3	361.169601	1080.48697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.098	1	63.098	62.598	63.598	0								0	0	0	0.95731	1	24376	24376		1.0136	0.051299	1		+		17701	13305	10851	10908	16999	16999					-0.05005173544486752
KSGYPLVY	8	Unmodified	_KSGYPLVY_					0	0	0		ZNF503|p.L500Sfs*37|1|0.74|ENSG00000165655|chr10:75399192-75399192|G/-|frameshift_variant;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503	ZNF503|p.L500Sfs*37|1|0.74|ENSG00000165655|chr10:75399192-75399192|G/-|frameshift_variant	ZNF503|p.L500Sfs*37|1|0.74|ENSG00000165655|chr10:75399192-75399192|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	926.4991455078125	1	926.498195	925.490919	1.0138	0.00093926	-0.017234	-1.5968E-05	0.99654	0.0009233	926.4982076584987	40.148	0.51937	40.076	39.79	40.31	-0.072838					17	9	2	0	0	0	0.057078	1	15124	15124		115.69	73.597	1	21354000			17702	4787	10852	10909	17000	17000					0.025192840115323634
KSHIEIIRGH	10	Unmodified	_KSHIEIIRGH_					0	0	0		GSR|p.P420Lfs*18|1|0.58|ENSG00000104687|chr8:30681956-30681956|G/-|frameshift_variant;nc|ENSG00000104687|P00390-5|GSR;nc|ENSG00000104687|P00390-4|GSR;nc|ENSG00000104687|P00390-2|GSR;nc|ENSG00000104687|P00390-3|GSR;ENSG00000104687|ENST00000221130|GSR	GSR|p.P420Lfs*18|1|0.58|ENSG00000104687|chr8:30681956-30681956|G/-|frameshift_variant	GSR|p.P420Lfs*18|1|0.58|ENSG00000104687|chr8:30681956-30681956|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	595.3436889648438	2	595.343646	1188.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.142	1	58.142	57.642	58.642	0								0	0	0	0.94746	1	22389	22389		5.2969	1.7004	1				17703	1943	10853	10910	17001	17001					0.08595016757135454
KSIGEENKY	9	Unmodified	_KSIGEENKY_					0	0	0		E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant;ENSG00000129173|ENST00000250024|E2F8	E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	534.2720336914062	2	534.272021	1066.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.134	1	17.134	16.634	17.634	0								0	0	0	0.76679	1	5812	5812		12.175	0	1				17704	746	10854	10911	17002	17002					-0.0011145514463350992
KSIKKLVLK	9	Unmodified	_KSIKKLVLK_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MSMS	HCT116MG_D190212_S1	1	352.9215393066406	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8278	1	7.8278	7.3278	8.3278	0								0	0	0	0.76995	1	2366	2366		1.0715	0	1				17705	2256	10855	10912	17003	17003					0.21740922092863002
KSILKIPIRRR	11	Unmodified	_KSILKIPIRRR_					0	0	0			REV__ENST00000479443.1_1_7:107384587-107389506:+|nuORF	REV__ENST00000479443.1_1_7:107384587-107389506:+|nuORF	MSMS	HCT116MG_D190212_S4	4	690.4410400390625	2	690.469712	1378.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.48	1	58.194	57.694	58.694	-0.28563								0	0	0	0.96163	1	21981	21981		0.23584	0.23584	1		+		17706	10101	10856	10913	17004	17004					0.2505665483845405
KSKGTKITK	9	Unmodified	_KSKGTKITK_					0	0	0		ENST00000370986.8_1_1:68153640-68153733:+|nuORF	ENST00000370986.8_1_1:68153640-68153733:+|nuORF	ENST00000370986.8_1_1:68153640-68153733:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	495.8182373046875	2	495.818941	989.62333	0.26258	0.00013019	-1.0137	-0.00050261	-0.75112	-0.00037242	495.81843585608505	57.889	0.41445	57.889	57.619	58.034	0					10	7	2	0	0	0	0.74917	1	22275	22275		1.8442	1.8442	1	19814000			17707	7435	10857	10914	17005	17005					0.12810308748316857
KSKKRALI	8	Unmodified	_KSKKRALI_					0	0	0			REV__nc|ENSG00000168297|Q7Z7A4-3|PXK	REV__nc|ENSG00000168297|Q7Z7A4-3|PXK	MSMS	HCT116MG_D190212_S1	1	472.3243103027344	2	472.324194	942.633835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.576	1	22.576	22.076	23.076	0								0	0	0	0.8837	1	7999	7999		4.756	0	1		+		17708	13193	10858	10915	17006	17006					0.16022336193407227
KSKPIEHKIRK	11	Unmodified	_KSKPIEHKIRK_					0	0	0			REV__ENSG00000150347|ENST00000279873|ARID5B	REV__ENSG00000150347|ENST00000279873|ARID5B	MULTI-MSMS	HCT116MG_D190212_S1	1	682.4306030273438	2	682.430253	1362.84595	0.64451	0.00043983	-0.062334	-4.2539E-05	0.58218	0.00039729	682.4299350097644	60.31	0.3097	60.31	60.129	60.439	0					8	5	2	0	0	0	0.74191	1	23280	23280		1.3295	0.92882	1	10170000	+		17709	12581	10859	10916	17007	17007					0.17904382813526354
KSKRLTLTK	9	Unmodified	_KSKRLTLTK_					0	0	0			REV__WDR72|p.M778Cfs*9|2|0.19|ENSG00000166415|chr15:53615874-53615874|T/-|frameshift_variant	REV__WDR72|p.M778Cfs*9|2|0.19|ENSG00000166415|chr15:53615874-53615874|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	538.3223266601562	2	537.853316	1073.69208	0.35687	0.00019194	-0.46813	-0.00025178	-0.11126	-5.9842E-05	537.8528213037245	58.236	0.27761	58.236	58.135	58.413	0					10	5	3	0	0	0	0.76909	1	22402	22402		0.45834	0	1	63776000	+		17710	13104	10860	10917	17008	17008					0.15817973048001477
KSKYKNRYWIL	11	Unmodified	_KSKYKNRYWIL_					0	0	0		ENST00000479790.2_1_13:22067163-22067286:-|nuORF	ENST00000479790.2_1_13:22067163-22067286:-|nuORF	ENST00000479790.2_1_13:22067163-22067286:-|nuORF	MSMS	HCT116MG_D190212_S1	1	749.9281616210938	2	749.930086	1497.84562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.134	1	40.134	39.634	40.634	0								0	0	0	0.95772	1	15076	15076		2.2828	0.95324	1				17711	8233	10861	10918	17009	17009					0.11660963093709142
KSNRRVGSW	9	Unmodified	_KSNRRVGSW_					0	0	0			REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	MSMS	HCT116MG_D190212_S2	2	545.298828125	2	545.299239	1088.58392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.615	1	61.473	60.973	61.973	-0.14227								0	0	0	0.76967	1	23868	23868		2.0598	0	1		+		17712	16374	10862	10919	17010	17010					0.043176015174594795
KSNRRVGSW	9	Unmodified	_KSNRRVGSW_					0	0	0			REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	MSMS	HCT116MG_D190212_S2	2	545.3576049804688	2	545.299239	1088.58392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.889	1	61.752	61.252	62.252	-0.13669								0	0	0	0.76967	1	23979	23979		2.0598	0	1		+		17713	16374	10862	10919	17011	17011					0.043176015174594795
KSNYQGLPVP	10	Unmodified	_KSNYQGLPVP_					0	0	0		SRPK3|p.S246Pfs*4|1|0.67|ENSG00000184343|chrX:153783100-153783100|C/-|frameshift_variant;nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000184343|Q9UPE1-3|SRPK3;nc|ENSG00000184343|Q9UPE1-4|SRPK3;ENSG00000184343|ENST00000370101|SRPK3	SRPK3|p.S246Pfs*4|1|0.67|ENSG00000184343|chrX:153783100-153783100|C/-|frameshift_variant	SRPK3|p.S246Pfs*4|1|0.67|ENSG00000184343|chrX:153783100-153783100|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	551.798583984375	2	551.798206	1101.58186	0.51271	0.00028291	0.47216	0.00026053	0.98486	0.00054345	551.7983327890277	42.448	0.50741	42.072	41.942	42.45	-0.37565					16	9	2	0	0	0	0.67188	1	15628	15628		22.736	1.1993	1	3997600			17714	5766	10863	10920	17012	17012					0.03513127989003806
KSPDTFMIP	9	Unmodified	_KSPDTFMIP_					0	0	0		ENSG00000138593|ENST00000559471|SECISBP2L;ENST00000557923.1_1_15:49329786-49338496:-|nuORF;ENST00000380927.6_2_15:49327640-49338496:-|nuORF;nc|ENSG00000138593|Q93073-2|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	MSMS	HCT116MG_D190212_S4	4	518.2645874023438	2	518.26261	1034.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.329	1	37.946	37.446	38.446	-0.38283								0	0	0	0.76877	1	14043	14043		5.2307	0.47466	1				17715	3566	10864	10921	17013	17013					-0.0052070804001687065
KSQLQEAP	8	Unmodified	_KSQLQEAP_					0	0	0		CON__P02672	CON__P02672	CON__P02672	MULTI-SECPEP	HCT116MG_D190212_S2	2	451.2224426269531	2	450.742899	899.471246	0.18927	8.5314E-05	-0.27512	-0.00012401	-0.085844	-3.8694E-05	450.7427233425365	23.552	1.3006	23.169	22.988	24.288	-0.38324					36	24	2	0	0	0	0.18428	1	8533	8533		56.177	14.337	1	15217000		+	17716	551	10865	10922	17014	17014					0.017489080007521807
KSQLQEAP	8	Unmodified	_KSQLQEAP_					0	0	0		CON__P02672	CON__P02672	CON__P02672	MULTI-MSMS	HCT116MG_D190212_S4	4	450.7428894042969	2	450.742899	899.471246	0.20735	9.3463E-05	0.11243	5.0677E-05	0.31978	0.00014414	450.74287456163455	23.232	1.2507	22.985	22.853	24.103	-0.24775					34	23	2	0	0	0	0.63727	1	8521	8521		29.082	0.59474	1	7670200		+	17717	551	10865	10922	17015	17015					0.017489080007521807
KSQVHPVL	8	Unmodified	_KSQVHPVL_					0	0	0		ENST00000530142.5_1_8:145581065-145582036:-|nuORF;ENST00000524492.5_1_8:145581065-145581518:-|nuORF;ENSG00000182325|ENST00000331890|FBXL6	ENST00000530142.5_1_8:145581065-145582036:-|nuORF	ENST00000530142.5_1_8:145581065-145582036:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	454.2716979980469	2	454.271627	906.528701	0.39108	0.00017766	-0.40301	-0.00018308	-0.011932	-5.4201E-06	454.2715895428177	27.353	0.31007	27	26.818	27.128	-0.35254					7	5	2	0	0	0	0.20876	1	9965	9965		71.922	15.745	1	6866000			17718	8614	10866	10923	17016	17016					0.07169794996980272
KSRGGRYLP	9	Unmodified	_KSRGGRYLP_					0	0	0		ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	517.8193969726562	2	517.298707	1032.58286	0.32923	0.00017031	2.4819	0.0012839	2.8112	0.0014542	517.3000109629282	49.141	0.31178	49.141	48.974	49.286	0					6	5	2	0	0	0	0.24195	1	18773	18773		13.906	3.8321	1	10946000			17719	7947	10867	10924	17017	17017					0.06787387148551716
KSRNVQRAR	9	Unmodified	_KSRNVQRAR_					0	0	0			REV__ENST00000429210.1_1:206135837-206137729:-|nuORF	REV__ENST00000429210.1_1:206135837-206137729:-|nuORF	MSMS	HCT116MG_D190212_S1	1	372.2224426269531	3	372.22325	1113.64792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.155	1	36.155	35.655	36.655	0								0	0	0	0.76954	1	13472	13472		2.4985	0	1		+		17720	15452	10868	10925	17018	17018					0.09564381674385913
KSRTYYQPTQ	10	Unmodified	_KSRTYYQPTQ_					0	0	0		RNF180|p.D121Y|1|0.34|ENSG00000164197|chr5:64213687-64213687|G/T|missense_variant	RNF180|p.D121Y|1|0.34|ENSG00000164197|chr5:64213687-64213687|G/T|missense_variant	RNF180|p.D121Y|1|0.34|ENSG00000164197|chr5:64213687-64213687|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	636.8431396484375	2	636.322576	1270.6306	0.46405	0.00029528	-1.2531	-0.0007974	-0.78909	-0.00050212	636.3223403290394	32.228	0.25985	31.998	31.838	32.098	-0.23009					6	4	2	0	0	0	0.78781	1	11901	11901		13.042	0.80181	1	4769600			17721	18116	10869	10926	17019	17019					0.006109965580662902
KSRTYYQPTQ	10	Unmodified	_KSRTYYQPTQ_					0	0	0		RNF180|p.D121Y|1|0.34|ENSG00000164197|chr5:64213687-64213687|G/T|missense_variant	RNF180|p.D121Y|1|0.34|ENSG00000164197|chr5:64213687-64213687|G/T|missense_variant	RNF180|p.D121Y|1|0.34|ENSG00000164197|chr5:64213687-64213687|G/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	636.322576	1270.6306	0.46405	0.00029528	-1.2531	-0.0007974	-0.78909	-0.00050212	636.3223403290394	32.228	0.25985	31.998	31.838	32.098	-0.23009	0	0	NaN	13.042	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4769600			17722	18116	10869	10926							0.006109965580662902
KSRVAMMQP	9	Unmodified	_KSRVAMMQP_					0	0	0		ENST00000234111.8_1_2:10580547-10580775:-|nuORF	ENST00000234111.8_1_2:10580547-10580775:-|nuORF	ENST00000234111.8_1_2:10580547-10580775:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	524.2752685546875	2	524.275529	1046.53651	0.55164	0.00028921	-0.97543	-0.00051139	-0.42379	-0.00022218	524.274984086404	17.281	0.20863	17.281	17.15	17.359	0					5	3	2	0	0	0	0.65706	1	5896	5896		7.9102	7.9102	1	4700500			17723	6774	10870	10927	17020	17020					0.015098629306066869
KSSESEFTQY	10	Unmodified	_KSSESEFTQY_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MULTI-MSMS	HCT116MG_D190212_S1	1	603.2694702148438	2	603.269675	1204.5248	0.50122	0.00030237	-0.20662	-0.00012465	0.2946	0.00017772	603.2693159936869	31.745	0.20858	31.745	31.596	31.805	0					6	3	2	0	0	0	0.14359	1	11710	11710		65.474	34.837	1	7928200			17724	3559	10871	10928	17021	17021					-0.06928384078037197
KSSESEFTQY	10	Unmodified	_KSSESEFTQY_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MULTI-MSMS	HCT116MG_D190212_S2	2	603.26953125	2	603.269675	1204.5248	0.86008	0.00051886	0.047725	2.8791E-05	0.90781	0.00054765	603.2696631362383	31.977	0.20699	31.747	31.631	31.838	-0.23009					6	3	2	0	0	0	0.079802	1	11834	11834		78.06	45.755	1	20125000			17725	3559	10871	10928	17022	17022					-0.06928384078037197
KSSLRFPML	9	Unmodified	_KSSLRFPML_					0	0	0			REV__nc|ENSG00000066230|P48764-2|SLC9A3	REV__nc|ENSG00000066230|P48764-2|SLC9A3	MSMS	HCT116MG_D190212_S4	4	360.20684814453125	3	360.207438	1077.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.372	1	46	45.5	46.5	-0.37134								0	0	0	0.76862	1	17119	17119		5.7319	0.43497	1		+		17726	10714	10872	10929	17023	17023					0.064789663592137
KSVKLKTAR	9	Unmodified	_KSVKLKTAR_					0	0	0			REV__PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant	REV__PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	515.8397827148438	2	515.840208	1029.66586	0.2949	0.00015212	-0.81676	-0.00042132	-0.52186	-0.0002692	515.839796482582	58.236	0.37858	58.236	58.085	58.463	0					9	7	2	0	0	0	0.75438	1	22443	22443		1.4819	0	1	69682000	+		17727	17446	10873	10930	17024	17024					0.1522170387654569
KSYVHSAL	8	Unmodified	_KSYVHSAL_					0	0	0		USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8|p.R138Kfs*14|1|0.27|ENSG00000138592|chr15:50459070-50459071|-/A|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant;USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8	USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant	USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	452.748291015625	2	452.747985	903.481417	0.23962	0.00010849	0.01794	8.1223E-06	0.25756	0.00011661	452.7479650790115	24.49	0.20888	24.49	24.412	24.621	0					5	3	2	0	0	0	0.065113	1	8797	8797		107.19	36.053	1	5780400			17728	3565	10874	10931	17025	17025					0.025815157259899024
KSYVHSAL	8	Unmodified	_KSYVHSAL_					0	0	0		USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8|p.R138Kfs*14|1|0.27|ENSG00000138592|chr15:50459070-50459071|-/A|frameshift_variant;USP8|p.N476Tfs*19|1|0.31|ENSG00000138592|chr15:50481683-50481683|A/-|frameshift_variant;USP8|p.K997Rfs*2|1|0.11|ENSG00000138592|chr15:50497178-50497178|A/-|frameshift_variant;ENSG00000138592|ENST00000307179|USP8	USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant	USP8|p.R76Kfs*3|1|0.54|ENSG00000138592|chr15:50441463-50441464|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	452.7480163574219	2	452.747985	903.481417	0.21971	9.9472E-05	0.28239	0.00012785	0.5021	0.00022732	452.7478240798476	25.113	0.20847	24.738	24.608	24.816	-0.37521					7	3	3	0	0	0	0.095352	1	9053	9053		96.111	34.753	1	22435000			17729	3565	10874	10931	17026	17026					0.025815157259899024
KTAIIGKP	8	Unmodified	_KTAIIGKP_					0	0	0		tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	tr|U7SZX8|U7SZX8_FUSNUtRNAmodificationGTPaseMnmEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mnmEPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	414.26971435546875	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.543	1	38.241	37.741	38.741	-0.30137								0	0	0	0.8837	1	14281	14281		10.074	4.3421	1				17730	18541	10875	10932	17027	17027					0.10743580628093241
KTASINQNV	9	Unmodified	_KTASINQNV_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	487.766845703125	2	487.766906	973.519259	0.2866	0.00013979	-0.013662	-6.6637E-06	0.27293	0.00013313	487.7668037713401	22.455	0.36511	22.455	22.272	22.637	0					12	6	3	0	0	0	0.012596	1	7952	7952		106.94	54.672	1	27266000			17731	2736	10876	10933	17028	17028					0.031439819208117115
KTASINQNV	9	Unmodified	_KTASINQNV_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	487.7670593261719	2	487.766906	973.519259	0.17251	8.4144E-05	0.34167	0.00016666	0.51418	0.0002508	487.76694733126453	22.929	0.36406	22.544	22.414	22.778	-0.3852					10	6	2	0	0	0	0.02327	1	8170	8170		93.166	18.237	1	71534000			17732	2736	10876	10933	17029	17029					0.031439819208117115
KTDDLTMVLY	10	Unmodified	_KTDDLTMVLY_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MSMS	HCT116MG_D190212_S2	2	599.8059692382812	2	599.804839	1197.59513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.248	1	51.069	50.569	51.569	-0.17868								0	0	0	0.42652	1	19658	19658		51.415	1.4822	1				17733	9604	10877	10934	17030	17030					0.004231979860833235
KTDESLTKY	9	Unmodified	_KTDESLTKY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;ENST00000555301.1_1_14:21862382-21863168:-|nuORF	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	HCT116MG_D190212_S1	1	543.2818603515625	2	542.779679	1083.5448	0.49624	0.00026935	0.12727	6.908E-05	0.62352	0.00033843	542.7797580143836	23.706	0.3135	23.706	23.471	23.784	0					7	5	2	0	0	0	0.046513	1	8471	8471		76.416	28.822	1	9015500			17734	432	10878	10935	17031	17031					0.0063741165256487875
KTDESLTKY	9	Unmodified	_KTDESLTKY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;ENST00000555301.1_1_14:21862382-21863168:-|nuORF	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	HCT116MG_D190212_S2	2	542.780029296875	2	542.779679	1083.5448	0.68961	0.00037431	-0.45265	-0.00024569	0.23696	0.00012862	542.7794503341844	24.28	0.36412	23.9	23.718	24.082	-0.38003					9	6	2	0	0	0	0.0045271	1	8697	8697		142.92	71.211	1	28010000			17735	432	10878	10935	17032	17032					0.0063741165256487875
KTDESLTKY	9	Unmodified	_KTDESLTKY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;ENST00000555301.1_1_14:21862382-21863168:-|nuORF	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MSMS	HCT116MG_D190212_S3	3	542.77978515625	2	542.779679	1083.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.734	1	23.673	23.173	24.173	-0.061449								0	0	0	0.37224	1	8394	8394		34.932	0.53034	1				17736	432	10878	10935	17033	17033					0.0063741165256487875
KTDGKIVQY	9	Unmodified	_KTDGKIVQY_					0	0	0		nc|ENSG00000089234|Q7Z569-2|BRAP;ENSG00000089234|ENST00000419234|BRAP	nc|ENSG00000089234|Q7Z569-2|BRAP	nc|ENSG00000089234|Q7Z569-2|BRAP	MULTI-MSMS	HCT116MG_D190212_S1	1	526.2930297851562	2	526.292756	1050.57096	0.40447	0.00021287	-0.22533	-0.00011859	0.17915	9.4283E-05	526.292683350245	24.799	0.20932	24.799	24.673	24.882	0					7	3	3	0	0	0	0.0056012	1	8900	8900		132.38	68.419	1	11327000			17737	1523	10879	10936	17034	17034					0.04769725614710296
KTDGKIVQY	9	Unmodified	_KTDGKIVQY_					0	0	0		nc|ENSG00000089234|Q7Z569-2|BRAP;ENSG00000089234|ENST00000419234|BRAP	nc|ENSG00000089234|Q7Z569-2|BRAP	nc|ENSG00000089234|Q7Z569-2|BRAP	MULTI-MSMS	HCT116MG_D190212_S2	2	526.2929077148438	2	526.292756	1050.57096	0.46863	0.00024664	-0.010812	-5.69E-06	0.45782	0.00024095	526.2926413821923	25.269	0.31264	24.894	24.764	25.076	-0.37521					9	5	3	0	0	0	0.095731	1	9120	9120		59.052	1.3305	1	27064000			17738	1523	10879	10936	17035	17035					0.04769725614710296
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	HCT116MG_D190212_S1	1	586.2931518554688	2	586.292756	1170.57096	0.70363	0.00041253	-0.097612	-5.7229E-05	0.60602	0.0003553	586.292614141883	46.311	0.30992	46.311	46.13	46.44	0					19	5	5	0	0	0	0.021544	1	17551	17551		114.2	54.128	1	331940000			17739	2507	10880	10937	17036	17036					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	HCT116MG_D190212_S1	1	391.19757080078125	3	391.197596	1170.57096	0.012658	4.9519E-06	-0.011406	-4.4618E-06	0.0012527	4.9007E-07	391.19753488664816	46.285	0.30992	46.285	46.13	46.44	0					14	5	4	0	0	0	0.16143	1	17569	17569		46.022	23.364	1	46266000			17740	2507	10880	10937	17037	17037					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	HCT116MG_D190212_S2	2	586.2931518554688	2	586.292756	1170.57096	0.51326	0.00030092	-0.31011	-0.00018182	0.20315	0.00011911	586.2925360804245	46.247	0.61754	46.146	45.915	46.532	-0.1014					36	11	5	0	0	0	0.0080275	1	17590	17590		140.63	82.911	1	832440000			17741	2507	10880	10937	17038	17038					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	HCT116MG_D190212_S2	2	391.1976318359375	3	391.197596	1170.57096	0.070261	2.7486E-05	-0.4633	-0.00018124	-0.39304	-0.00015376	391.19739126457546	46.253	0.41196	46.151	45.965	46.377	-0.10254					21	7	4	0	0	0	0.16143	1	17612	17612		46.022	26.396	1	162220000			17742	2507	10880	10937	17039	17039					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	HCT116MG_D190212_S2	2	1171.5777587890625	1	1171.57824	1170.57096	0.44649	0.0005231	-0.18957	-0.0002221	0.25692	0.000301	1171.577580642145	46.264	0.2577	46.159	46.014	46.272	-0.10448					11	4	3	0	0	0	0.095931	1	17618	17618		71.708	23.362	1	41431000			17743	2507	10880	10937	17040	17040					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	HCT116MG_D190212_S3	3	586.2928466796875	2	586.292756	1170.57096	0.68759	0.00040313	0.00039555	2.3191E-07	0.68798	0.00040336	586.2926626016213	46.569	0.3646	46.257	46.075	46.439	-0.31237					16	6	4	0	0	0	0.014973	2	17470	17436;17470		121.53	63.812	1	35489000			17744	2507	10880	10937	17041;17042	17042					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	HCT116MG_D190212_S3	3	391.197509765625	3	391.197596	1170.57096	0.14046	5.4947E-05	-0.2381	-9.3145E-05	-0.097646	-3.8199E-05	391.1974093411248	46.583	0.26048	46.27	46.126	46.387	-0.31282					7	4	2	0	0	0	0.30874	1	17493	17493		29.841	16.226	1	6541000			17745	2507	10880	10937	17043	17043					-0.007502743852683125
KTDHFIFTY	9	Unmodified	_KTDHFIFTY_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	HCT116MG_D190212_S4	4	586.29296875	2	586.292756	1170.57096	0.58456	0.00034272	0.12756	7.4786E-05	0.71212	0.00041751	586.2927629977333	46.621	0.29221	46.25	46.14	46.432	-0.37134					11	5	3	0	0	0	0.024226	1	17222	17222		110.55	58.923	1	9838200			17746	2507	10880	10937	17044	17044					-0.007502743852683125
KTDKHMQKY	9	Unmodified	_KTDKHMQKY_					0	0	0		ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3|ZFHX4;ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant;ZFHX4|p.P2056Tfs*82|1|0.25|ENSG00000091656|chr8:76853079-76853083|CTCCT/-|frameshift_variant;ZFHX4|p.D2246*|1|0.34|ENSG00000091656|chr8:76853650-76853651|-/T|frameshift_variant;ZFHX4|p.I2143Nfs*7|1|0.31|ENSG00000091656|chr8:76853343-76853344|-/A|frameshift_variant;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ZFHX4|p.P2056Hfs*26|1|0.19|ENSG00000091656|chr8:76853081-76853084|CCTC/-|frameshift_variant;ZFHX4|p.K1867Nfs*7|1|0.09|ENSG00000091656|chr8:76852518-76852518|A/-|frameshift_variant;ZFHX4|p.L1719Cfs*6|1|0.13|ENSG00000091656|chr8:76852073-76852073|T/-|frameshift_variant;ZFHX4|p.Q1674Afs*4|1|0.14|ENSG00000091656|chr8:76851934-76851935|-/A|frameshift_variant;ZFHX4|p.H1565Tfs*5|1|0.28|ENSG00000091656|chr8:76851613-76851613|T/-|frameshift_variant;ZFHX4|p.K1442Nfs*10|1|0.18|ENSG00000091656|chr8:76851241-76851241|A/-|frameshift_variant;ZFHX4|p.V1343Sfs*4|1|0.08|ENSG00000091656|chr8:76850945-76850946|-/A|frameshift_variant;ZFHX4|p.P2057Hfs*26|2|0.17|ENSG00000091656|chr8:76853084-76853084|C/-|frameshift_variant	ENSG00000091656|ENST00000651372|ZFHX4	ENSG00000091656|ENST00000651372|ZFHX4	MULTI-MSMS	HCT116MG_D190212_S1	1	589.8031616210938	2	589.802965	1177.59138	0.69496	0.00040989	-0.261	-0.00015394	0.43396	0.00025595	589.8027516882099	14.728	0.15602	14.728	14.65	14.806	0					6	2	3	0	0	0	0.20521	1	4866	4866		40.725	27.682	1	3976400			17747	1568	10881	10938	17045	17045					0.009685730028877515
KTDKTLVLL	9	Unmodified	_KTDKTLVLL_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	HCT116MG_D190212_S1	1	515.8294677734375	2	515.828975	1029.6434	0.25865	0.00013342	-0.38366	-0.0001979	-0.12501	-6.4483E-05	515.8289201595131	44.062	0.36584	44.062	43.884	44.25	0					14	6	3	0	0	0	0.003706	1	16650	16650		155.03	43.739	1	54158000			17748	2165	10882	10939	17046	17046					0.1297605968827611
KTDKTLVLL	9	Unmodified	_KTDKTLVLL_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	HCT116MG_D190212_S2	2	515.828857421875	2	515.828975	1029.6434	0.30175	0.00015565	-0.30686	-0.00015829	-0.0051106	-2.6362E-06	515.8287812275614	43.917	0.4114	43.839	43.607	44.019	-0.078373					17	7	3	0	0	0	0.0058997	1	16648	16648		129.77	37.119	1	158770000			17749	2165	10882	10939	17047	17047					0.1297605968827611
KTDKTLVLL	9	Unmodified	_KTDKTLVLL_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	HCT116MG_D190212_S3	3	515.829345703125	2	515.828975	1029.6434	0.41501	0.00021407	-0.036605	-1.8882E-05	0.37841	0.00019519	515.8289832334167	44.249	0.3111	43.941	43.812	44.123	-0.30759					9	5	2	0	0	0	0.037825	1	16563	16563		80.676	7.7081	1	8155600			17750	2165	10882	10939	17048	17048					0.1297605968827611
KTDLDLDGY	9	Unmodified	_KTDLDLDGY_					0	0	0		ENSG00000127527|ENST00000455140|EPS15L1;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1	ENSG00000127527|ENST00000455140|EPS15L1	ENSG00000127527|ENST00000455140|EPS15L1	MULTI-SECPEP	HCT116MG_D190212_S1	1	520.3328857421875	2	520.250754	1038.48696	0.19332	0.00010058	-0.0065229	-3.3935E-06	0.1868	9.7183E-05	520.2505663271751	39.561	0.20852	39.561	39.449	39.657	0					5	3	2	0	0	0	0.22393	1	14857	14857		13.906	3.0821	1	5449600			17751	2969	10883	10940	17049	17049					-0.03074850272855656
KTDLDLQQY	9	Unmodified	_KTDLDLQQY_					0	0	0		LRRC8C|p.W509Lfs*20|1|0.33|ENSG00000171488|chr1:89714087-89714088|-/C|frameshift_variant;ENSG00000171488|ENST00000370454|LRRC8C	LRRC8C|p.W509Lfs*20|1|0.33|ENSG00000171488|chr1:89714087-89714088|-/C|frameshift_variant	LRRC8C|p.W509Lfs*20|1|0.33|ENSG00000171488|chr1:89714087-89714088|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	562.2852783203125	2	562.285128	1122.5557	0.40761	0.00022919	-0.068916	-3.875E-05	0.33869	0.00019044	562.2851027803522	37.096	0.36438	36.795	36.613	36.977	-0.30137					13	6	3	0	0	0	0.043159	1	13735	13735		78.06	12.825	1	18304000			17752	5197	10884	10941	17050	17050					-0.0006718597312556085
KTDLHNEGY	9	Unmodified	_KTDLHNEGY_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	MULTI-MSMS	HCT116MG_D190212_S1	1	538.7542114257812	2	538.753995	1075.49344	0.44733	0.000241	0.033791	1.8205E-05	0.48112	0.00025921	538.7538544150939	19.894	0.3138	19.894	19.756	20.07	0					11	5	3	0	0	0	0.0037246	1	6943	6943		154.75	116.78	1	17292000			17753	3135	10885	10942	17051	17051					-0.041289123214710344
KTDLHNEGY	9	Unmodified	_KTDLHNEGY_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.7540893554688	2	538.753995	1075.49344	0.45057	0.00024275	-0.13018	-7.0135E-05	0.32039	0.00017261	538.7538594778661	20.54	0.78851	20.16	19.605	20.394	-0.37949					25	14	4	0	0	0	0.004234	1	7182	7182		147.24	101.54	1	72120000			17754	3135	10885	10942	17052	17052					-0.041289123214710344
KTDLHNEGY	9	Unmodified	_KTDLHNEGY_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	MSMS	HCT116MG_D190212_S3	3	538.7542724609375	2	538.753995	1075.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.651	1	19.71	19.21	20.21	0.05983								0	0	0	0.76638	1	6751	6751		13.615	3.5409	1				17755	3135	10885	10942	17053	17053					-0.041289123214710344
KTDMNRHHY	9	Unmodified	_KTDMNRHHY_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	601.781494140625	2	601.280189	1200.54582	0.55502	0.00033372	-0.14388	-8.6514E-05	0.41114	0.00024721	601.2800968866155	10.596	0.39802	10.322	10.114	10.512	-0.27365					36	16	3	0	0	0	0.45684	1	3312	3312		19.362	12.639	1	1436800			17756	5206	10886	10943	17054	17054					-0.0464265245950628
KTDMVEKALLY	11	Unmodified	_KTDMVEKALLY_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MSMS	HCT116MG_D190212_S2	2	655.8552856445312	2	655.854864	1309.69517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.177	1	42.109	41.609	42.609	-0.068199								0	0	0	0.64542	1	15957	15957		54.259	22.222	1				17757	5428	10887	10944	17055	17055					0.052714353199007746
KTDPENTDY	9	Unmodified	_KTDPENTDY_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MULTI-MSMS	HCT116MG_D190212_S1	1	541.7355346679688	2	541.735468	1081.45638	0.58631	0.00031762	-0.12879	-6.977E-05	0.45752	0.00024785	541.7353413029387	20.253	0.36502	20.253	20.123	20.488	0					11	6	3	0	0	0	0.0019609	1	7072	7072		187.3	105.68	1	35946000			17758	1994	10888	10945	17056	17056					-0.08108628657873851
KTDPENTDY	9	Unmodified	_KTDPENTDY_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7354736328125	2	541.735468	1081.45638	0.50865	0.00027555	0.027	1.4627E-05	0.53565	0.00029018	541.7354093826849	20.748	0.41868	20.368	20.183	20.602	-0.37949					20	7	5	0	0	0	0.0019609	1	7267	7267		187.3	105.68	1	121550000			17759	1994	10888	10945	17057	17057					-0.08108628657873851
KTDPENTDY	9	Unmodified	_KTDPENTDY_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MULTI-MSMS	HCT116MG_D190212_S2	2	1082.4656982421875	1	1082.46366	1081.45638	0.49305	0.00053371	0.1496	0.00016194	0.64265	0.00069565	1082.4638306562404	20.747	0.2101	20.368	20.236	20.446	-0.37949					6	3	2	0	0	0	6.1965E-05	1	7278	7278		205.91	133.99	1	19032000			17760	1994	10888	10945	17058	17058					-0.08108628657873851
KTDPENTDY	9	Unmodified	_KTDPENTDY_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7359619140625	2	541.735468	1081.45638	0.38577	0.00020898	-0.21495	-0.00011645	0.17082	9.2539E-05	541.7353045861784	20.081	0.41654	20.129	19.999	20.416	0.048107					13	7	2	0	0	0	0.0041644	1	6929	6929		148.27	90.797	1	15243000			17761	1994	10888	10945	17059	17059					-0.08108628657873851
KTDPENTDY	9	Unmodified	_KTDPENTDY_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MSMS	HCT116MG_D190212_S4	4	541.7352905273438	2	541.735468	1081.45638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.486	1	20.284	19.784	20.784	-0.20133								0	0	0	0.32687	1	7015	7015		38.176	0.20157	1				17762	1994	10888	10945	17060	17060					-0.08108628657873851
KTDPKDPANY	10	Unmodified	_KTDPKDPANY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	574.78173828125	2	574.782753	1147.55095	0.39515	0.00022713	-0.4143	-0.00023813	-0.019153	-1.1009E-05	574.7824587584536	19.969	0.36607	19.969	19.756	20.123	0					9	6	2	0	0	0	0.016452	1	6989	6989		128.57	67.216	1	2707300			17763	5945	10889	10946	17061	17061					-0.016920701159051532
KTDPKDPANY	10	Unmodified	_KTDPKDPANY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	574.7825317382812	2	574.782753	1147.55095	0.34121	0.00019612	-0.068587	-3.9423E-05	0.27263	0.0001567	574.7826618438271	20.589	0.37224	20.21	19.969	20.342	-0.37949					11	6	2	0	0	0	0.017881	1	7210	7210		125.18	77.433	1	15159000			17764	5945	10889	10946	17062	17062					-0.016920701159051532
KTDSDSDLQLY	11	Unmodified	_KTDSDSDLQLY_					0	0	0		ENST00000525415.1_1_1:110168821-110169689:+|nuORF;AMPD2|p.P300Lfs*63|2|0.28|ENSG00000116337|chr1:109627188-109627188|C/-|frameshift_variant;AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2	ENST00000525415.1_1_1:110168821-110169689:+|nuORF	ENST00000525415.1_1_1:110168821-110169689:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	642.8017578125	2	642.80134	1283.58813	0.50041	0.00032167	0.022533	1.4484E-05	0.52295	0.00033615	642.8012547600897	38.812	0.31307	38.728	38.544	38.857	-0.084618					13	5	3	0	0	0	0.12667	2	14589	14589;14604		84.522	35.266	1	72108000			17765	125	10890	10947	17063;17064	17063					-0.04232443360797333
KTDSDSDLQLY	11	Unmodified	_KTDSDSDLQLY_					0	0	0		ENST00000525415.1_1_1:110168821-110169689:+|nuORF;AMPD2|p.P300Lfs*63|2|0.28|ENSG00000116337|chr1:109627188-109627188|C/-|frameshift_variant;AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2	ENST00000525415.1_1_1:110168821-110169689:+|nuORF	ENST00000525415.1_1_1:110168821-110169689:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	642.8017578125	2	642.80134	1283.58813	0.52357	0.00033655	0.055529	3.5694E-05	0.5791	0.00037225	642.8013719738997	39.043	0.4183	38.742	38.561	38.979	-0.30137					17	7	3	0	0	0	0.031511	1	14486	14486		104.48	60.712	1	46457000			17766	125	10890	10947	17065	17065					-0.04232443360797333
KTDSDSDLQLY	11	Unmodified	_KTDSDSDLQLY_					0	0	0		ENST00000525415.1_1_1:110168821-110169689:+|nuORF;AMPD2|p.P300Lfs*63|2|0.28|ENSG00000116337|chr1:109627188-109627188|C/-|frameshift_variant;AMPD2|p.G205Vfs*158|1|0.18|ENSG00000116337|chr1:109626346-109626346|G/-|frameshift_variant;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2	ENST00000525415.1_1_1:110168821-110169689:+|nuORF	ENST00000525415.1_1_1:110168821-110169689:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	642.80224609375	2	642.80134	1283.58813	0.48313	0.00031055	0.27743	0.00017834	0.76056	0.00048889	642.8014675842622	39.154	0.28679	38.773	38.641	38.928	-0.38055					11	6	2	0	0	0	0.068951	1	14378	14378		94.909	41.076	1	11095000			17767	125	10890	10947	17066	17066					-0.04232443360797333
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000213445|ENST00000534313|SIPA1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	605.2913208007812	2	605.290942	1208.56733	0.55498	0.00033592	0.3775	0.0002285	0.93248	0.00056442	605.291004014093	24.124	0.31395	24.124	23.941	24.255	0					18	5	4	0	0	0	2.9679E-05	1	8623	8623		164.85	88.026	1	118780000			17768	2032;2551;6154;6413	10891	10948	17067	17067					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000213445|ENST00000534313|SIPA1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	403.8630676269531	3	403.863053	1208.56733	0.0030239	1.2212E-06	-0.054417	-2.1977E-05	-0.051393	-2.0756E-05	403.8629939764025	24.124	0.20921	24.124	23.993	24.202	0					5	3	2	0	0	0	0.61097	1	8646	8646		23.34	9.821	1	9488700			17769	2032;2551;6154;6413	10891	10948	17068	17068					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000213445|ENST00000534313|SIPA1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	605.2910766601562	2	605.290942	1208.56733	0.72829	0.00044083	0.10786	6.5287E-05	0.83615	0.00050611	605.2910252515311	24.698	0.67649	24.318	24.135	24.811	-0.38003					35	12	5	0	0	0	3.459E-07	1	8863	8863		188.38	102.05	1	545530000			17770	2032;2551;6154;6413	10891	10948	17069	17069					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000213445|ENST00000534313|SIPA1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	403.86322021484375	3	403.863053	1208.56733	-0.067286	-2.7174E-05	0.24822	0.00010025	0.18094	7.3075E-05	403.8630960543248	24.703	0.26053	24.323	24.187	24.448	-0.38003					9	4	3	0	0	0	0.068951	1	8886	8886		72.187	39.289	1	18004000			17771	2032;2551;6154;6413	10891	10948	17070	17070					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000213445|ENST00000534313|SIPA1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	1209.574951171875	1	1209.57461	1208.56733	0.5433	0.00065716	-0.52412	-0.00063396	0.01918	2.3199E-05	1209.573958633758	24.721	0.20859	24.341	24.187	24.396	-0.38003					7	3	3	0	0	0	0.012403	1	8888	8888		135.87	65.542	1	12632000			17772	2032;2551;6154;6413	10891	10948	17071	17071					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000213445|ENST00000534313|SIPA1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	HCT116MG_D190212_S3	3	605.2911987304688	2	605.290942	1208.56733	0.40892	0.00024752	0.34778	0.00021051	0.7567	0.00045802	605.2910096532901	24.087	0.46843	24.025	23.843	24.311	-0.061449					17	8	3	0	0	0	0.004122	1	8542	8542		142.92	78.958	1	29504000			17773	2032;2551;6154;6413	10891	10948	17072	17072					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000213445|ENST00000534313|SIPA1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	HCT116MG_D190212_S4	4	605.2909545898438	2	605.290942	1208.56733	1.274	0.00077112	-0.73375	-0.00044413	0.54021	0.00032699	605.290550315737	24.481	0.36314	24.212	24.03	24.393	-0.26881					8	6	2	0	0	0	0.71419	1	8658	8658		16.566	6.4153	1	3006500			17774	2032;2551;6154;6413	10891	10948	17073	17073					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;SIPA1|p.A787Pfs*12|1|0.27|ENSG00000213445|chr11:65649309-65649309|G/-|frameshift_variant;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.N727Kfs*21|1|0.7|ENSG00000197555|chr14:71661386-71661387|-/A|frameshift_variant;SIPA1L1|p.K776*|1|0.32|ENSG00000197555|chr14:71671184-71671185|-/C|frameshift_variant;ENSG00000213445|ENST00000534313|SIPA1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000213445|ENST00000534313|SIPA1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	605.290942	1208.56733	1.274	0.00077112	-0.73375	-0.00044413	0.54021	0.00032699	605.290550315737	24.481	0.36314	24.212	24.03	24.393	-0.26881	0.042285	-0.0010913	NaN	188.38	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3006500			17775	2032;2551;6154;6413	10891	10948							-0.028609889497602126
KTDVHSPLKY	10	Unmodified	_KTDVHSPLKY_					0	0	0		ENSG00000142606|ENST00000378412|MMEL1;nc|ENSG00000142606|Q495T6-3|MMEL1	ENSG00000142606|ENST00000378412|MMEL1	ENSG00000142606|ENST00000378412|MMEL1	MULTI-MSMS	HCT116MG_D190212_S2	2	594.3252563476562	2	594.324588	1186.63462	0.5964	0.00035446	0.13797	8.2E-05	0.73437	0.00043646	594.3245080127612	26.488	0.46593	26.126	25.87	26.335	-0.36164					18	8	3	0	0	0	0.020414	1	9595	9595		119.6	77.763	1	11013000			17776	3766	10892	10949	17074	17074					0.048770860518061454
KTDVHSPLKY	10	Unmodified	_KTDVHSPLKY_					0	0	0		ENSG00000142606|ENST00000378412|MMEL1;nc|ENSG00000142606|Q495T6-3|MMEL1	ENSG00000142606|ENST00000378412|MMEL1	ENSG00000142606|ENST00000378412|MMEL1	MULTI-MSMS	HCT116MG_D190212_S2	2	396.55224609375	3	396.552151	1186.63462	-0.045	-1.7845E-05	0.1161	4.6041E-05	0.071104	2.8196E-05	396.5521119417316	26.489	0.51774	26.127	25.87	26.387	-0.36164					15	9	2	0	0	0	0.022931	1	9608	9608		93.928	67.907	1	12864000			17777	3766	10892	10949	17075	17075					0.048770860518061454
KTDVHSPLKY	10	Unmodified	_KTDVHSPLKY_					0	0	0		ENSG00000142606|ENST00000378412|MMEL1;nc|ENSG00000142606|Q495T6-3|MMEL1	ENSG00000142606|ENST00000378412|MMEL1	ENSG00000142606|ENST00000378412|MMEL1	MULTI-MATCH	HCT116MG_D190212_S1	1		3	396.552151	1186.63462	0.039583	1.5697E-05	-0.42372	-0.00016803	-0.38413	-0.00015233	396.55207180284253	26.162	0.26094	26.162	25.927	26.188	0	0.017421	-0.00047282	NaN	93.928	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4148400			17778	3766	10892	10949							0.048770860518061454
KTDYDTREY	9	Unmodified	_KTDYDTREY_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-MSMS	HCT116MG_D190212_S1	1	595.77001953125	2	595.769842	1189.52513	0.64581	0.00038475	-0.38774	-0.000231	0.25807	0.00015375	595.7696183975362	21.199	0.21212	21.199	21.067	21.279	0					9	3	3	0	0	0	0.095731	1	7451	7451		59.052	39.795	1	10890000			17779	2756	10893	10950	17076	17076					-0.06204964358175857
KTEDPDLPAFY	11	Unmodified	_KTEDPDLPAFY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;ENST00000574728.1_1_17:1583983-1584260:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	HCT116MG_D190212_S2	2	648.3800659179688	2	648.311343	1294.60813	0.97169	0.00062996	-0.1534	-9.9449E-05	0.81829	0.00053051	648.3113040179056	47.672	0.25909	47.539	47.377	47.636	-0.13281					8	4	2	0	0	0	0.36272	1	18225	18225		8.1555	0	1	7095800			17780	5321	10894	10951	17077	17077					-0.02738647630167179
KTEGGKVLY	9	Unmodified	_KTEGGKVLY_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8;MPHOSPH8|p.K169Qfs*28|1|0.35|ENSG00000196199|chr13:19646577-19646578|-/C|frameshift_variant;MPHOSPH8|p.K362Sfs*14|1|0.32|ENSG00000196199|chr13:19647154-19647154|A/-|frameshift_variant;MPHOSPH8|p.N459Mfs*20|1|0.37|ENSG00000196199|chr13:19650054-19650054|A/-|frameshift_variant	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-MSMS	HCT116MG_D190212_S1	1	497.78192138671875	2	497.782025	993.549496	0.47562	0.00023676	-0.070107	-3.4898E-05	0.40551	0.00020186	497.78188050710304	24.333	0.26185	24.333	24.15	24.412	0					8	4	2	0	0	0	0.05892	1	8719	8719		70.332	20.399	1	7955200			17781	6049	10895	10952	17078	17078					0.05246340585995313
KTEGGKVLY	9	Unmodified	_KTEGGKVLY_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8;MPHOSPH8|p.K169Qfs*28|1|0.35|ENSG00000196199|chr13:19646577-19646578|-/C|frameshift_variant;MPHOSPH8|p.K362Sfs*14|1|0.32|ENSG00000196199|chr13:19647154-19647154|A/-|frameshift_variant;MPHOSPH8|p.N459Mfs*20|1|0.37|ENSG00000196199|chr13:19650054-19650054|A/-|frameshift_variant	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-MSMS	HCT116MG_D190212_S2	2	497.7820739746094	2	497.782025	993.549496	0.42934	0.00021372	0.11437	5.6929E-05	0.54371	0.00027065	497.7819474066916	24.955	0.31128	24.58	24.4	24.712	-0.37521					13	5	4	0	0	0	0.012531	1	8974	8974		107.1	39.019	1	40276000			17782	6049	10895	10952	17079	17079					0.05246340585995313
KTELERAFGYY	11	Unmodified	_KTELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	HCT116MG_D190212_S1	1	688.5057373046875	2	688.845884	1375.67722	0.6	0.00041331	-0.71931	-0.0004955	-0.11932	-8.219E-05	688.845571475585	44.223	0.21516	44.223	44.088	44.304	0					8	3	3	0	0	0	0.12547	1	16746	16746		84.738	49.806	1	14910000			17783	2328	10896	10953	17080	17080					0.004404363894082053
KTELERAFGYY	11	Unmodified	_KTELERAFGYY_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MSMS	HCT116MG_D190212_S2	2	688.8466796875	2	688.845884	1375.67722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.191	1	44.112	43.612	44.612	-0.078373								0	0	0	1.2901E-10	1	16777	16777		150.06	110.12	1				17784	2328	10896	10953	17081	17081					0.004404363894082053
KTFKDVGNL	9	Unmodified	_KTFKDVGNL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.D465Efs*32|1|0.12|ENSG00000113810|chr3:160416372-160416373|-/GCATACATCTT|frameshift_variant;SMC4|p.K628Nfs*23|1|0.11|ENSG00000113810|chr3:160420762-160420762|A/-|frameshift_variant	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MSMS	HCT116MG_D190212_S2	2	511.2886962890625	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.567	1	33.374	32.874	33.874	-0.19297								0	0	0	0.76677	1	12460	12460		12.241	0.60036	1				17785	2406	10897	10954	17082	17082					0.05093742960275449
KTFLKARKKD	10	Unmodified	_KTFLKARKKD_					0	0	0			REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	REV__tr|U7SNY8|U7SNY8_FUSNUProbabletranscriptionalregulatoryproteinHMPREF1766_01968OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01968PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	617.8845825195312	2	617.885147	1233.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.312	1	30.312	29.812	30.812	0								0	0	0	0.92917	1	11113	11113		9.3831	0.63772	1		+		17786	17743	10898	10955	17083	17083					0.148213334851107
KTFNTTSTP	9	Unmodified	_KTFNTTSTP_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L	MULTI-MSMS	HCT116MG_D190212_S4	4	498.4598083496094	2	498.753464	995.492375	0.45571	0.00022729	-0.25037	-0.00012487	0.20534	0.00010241	498.7533844315831	34.291	0.20774	33.906	33.724	33.932	-0.38558					6	3	2	0	0	0	0.61923	1	12514	12514		10.074	0	1	4282500	+		17787	11710	10899	10956	17084	17084					-0.005551266904035401
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant;THOC2|p.M511L|1|0.51|ENSG00000125676|chrX:123644807-123644807|T/G|missense_variant	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	HCT116MG_D190212_S1	1	413.8802185058594	3	413.88049	1238.61964	-0.067439	-2.7912E-05	-0.29006	-0.00012005	-0.3575	-0.00014796	414.2147995785033	23.002	0.3122	23.002	22.845	23.158	0					7	5	2	0	0	0	0.24895	1	8201	8201		27.223	20.186	1	3600500			17788	2898	10900	10957	17085	17085					0.00987638974447691
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant;THOC2|p.M511L|1|0.51|ENSG00000125676|chrX:123644807-123644807|T/G|missense_variant	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	HCT116MG_D190212_S2	2	413.88006591796875	3	413.88049	1238.61964	-0.029344	-1.2145E-05	-0.029198	-1.2085E-05	-0.058542	-2.4229E-05	413.88039972596425	23.687	0.46852	23.304	23.143	23.612	-0.38324					18	8	3	0	0	0	0.0201	1	8476	8476		79.427	61.564	1	10200000			17789	2898	10900	10957	17086	17086					0.00987638974447691
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant;THOC2|p.M511L|1|0.51|ENSG00000125676|chrX:123644807-123644807|T/G|missense_variant	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MSMS	HCT116MG_D190212_S2	2	620.3168334960938	2	620.317097	1238.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.858	1	23.475	22.975	23.975	-0.38324								0	0	0	0.030677	1	8523	8523		81.89	30.26	1				17790	2898	10900	10957	17087	17087					0.00987638974447691
KTFVMGLNL	9	Unmodified	_KTFVMGLNL_					0	0	0		SEC62|p.I202N|1|0.18|ENSG00000008952|chr3:169985860-169985860|T/A|missense_variant	SEC62|p.I202N|1|0.18|ENSG00000008952|chr3:169985860-169985860|T/A|missense_variant	SEC62|p.I202N|1|0.18|ENSG00000008952|chr3:169985860-169985860|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	511.28778076171875	2	511.788795	1021.56304	0.72183	0.00036943	-1.2062	-0.00061732	-0.48436	-0.00024789	511.7891634964929	46.917	0.25697	46.795	46.563	46.82	-0.12175					7	4	2	0	0	0	0.24195	1	17891	17891		9.3831	0	1	11590000			17791	18139	10901	10958	17088	17088					0.0531187509358233
KTGRRHQRR	9	Unmodified	_KTGRRHQRR_					0	0	0			REV__ENST00000485665.1_1_9:35680733-35681019:+|nuORF	REV__ENST00000485665.1_1_9:35680733-35681019:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	597.5700073242188	2	597.855578	1193.6966	0.96143	0.00057479	0.53045	0.00031713	1.4919	0.00089193	597.8557372443646	49.165	0.95999	48.8	48.525	49.485	-0.365					44	20	3	0	0	0	0.76814	1	18397	18397		0.52476	0	1	11795000	+		17792	11316	10902	10959	17089	17089					0.10750295034154078
KTIDEPWEH	9	Unmodified	_KTIDEPWEH_					0	0	0			REV__ENST00000493647.1_1_16:110042-110531:-|nuORF	REV__ENST00000493647.1_1_16:110042-110531:-|nuORF	MSMS	HCT116MG_D190212_S2	2	577.7758178710938	2	577.77747	1153.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.23	1	11.94	11.44	12.44	-0.28953								0	0	0	0.76973	1	3990	3990		1.8442	0.36234	1		+		17793	10496	10903	10960	17090	17090					-0.03024052770342678
KTIESSKHP	9	Unmodified	_KTIESSKHP_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	HCT116MG_D190212_S3	3	513.7682495117188	2	513.782556	1025.55056	0.1695	8.7086E-05	0.49296	0.00025328	0.66246	0.00034036	513.7827191948859	22.38	0.41706	22.381	22.094	22.511	0.0005188					10	7	2	0	0	0	0.21474	1	7897	7897		22.736	0	1	1741400	+		17794	11857	10904	10961	17091	17091					0.03880554954912441
KTILPAAA	8	Unmodified	_KTILPAAA_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MSMS	HCT116MG_D190212_S4	4	392.74853515625	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.173	1	60.912	60.412	61.412	-0.2602								0	0	0	0.8837	1	23070	23070		0.79363	0	1				17795	4645	10905	10962	17092	17092					0.08503605219698329
KTKDENFSYRK	11	Unmodified	_KTKDENFSYRK_					0	0	0			REV__tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	REV__tr|U7SSL3|U7SSL3_FUSNUProbableRNA2'-phosphotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=kptAPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	708.8707885742188	2	708.367515	1414.72048	0.88893	0.00062969	0.14271	0.00010109	1.0316	0.00073078	708.3675567056084	33.033	0.49461	32.651	32.206	32.7	-0.38223					25	15	3	0	0	0	0.36308	1	12065	12065		7.609	0	1	26380000	+		17796	17771	10906	10963	17093	17093					0.02970626166643342
KTKEARKL	8	Unmodified	_KTKEARKL_					0	0	0		ENST00000423330.1_1_9:133527641-133527767:+|nuORF	ENST00000423330.1_1_9:133527641-133527767:+|nuORF	ENST00000423330.1_1_9:133527641-133527767:+|nuORF	MSMS	HCT116MG_D190212_S1	1	487.3111267089844	2	487.311284	972.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.503	1	44.503	44.003	45.003	0								0	0	0	0.8837	1	16837	16837		2.0598	0	1				17797	7800	10907	10964	17094	17094					0.12061441951118468
KTKKKKKQSKE	11	Unmodified	_KTKKKKKQSKE_					0	0	0			REV__nc|ENSG00000158186|O14807-2|MRAS	REV__nc|ENSG00000158186|O14807-2|MRAS	MSMS	HCT116MG_D190212_S3	3	454.29296875	3	454.292671	1359.85618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.608	1	60.362	59.862	60.862	-0.24672								0	0	0	0.96208	1	23112	23112		0	0	1		+		17798	12775	10908	10965	17095	17095					0.19064945748095852
KTKQLTQW	8	Unmodified	_KTKQLTQW_					0	0	0			REV__ENSG00000186952|ENST00000455884|TMEM232	REV__ENSG00000186952|ENST00000455884|TMEM232	MSMS	HCT116MG_D190212_S1	1	516.7935180664062	2	516.795466	1031.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.961	1	47.961	47.461	48.461	0								0	0	0	0.8837	1	18237	18237		10.824	1.4765	1		+		17799	13907	10909	10966	17096	17096					0.061854491971644165
KTLEGEFSV	9	Unmodified	_KTLEGEFSV_					0	0	0		YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;ENSG00000100811|ENST00000262238|YY1;YY2|p.L224Yfs*18|1|0.41|ENSG00000230797|chrX:21857148-21857148|G/-|frameshift_variant;ENSG00000230797|ENST00000429584|YY2	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	505.2638244628906	2	505.263665	1008.51278	0.16663	8.4193E-05	0.24312	0.00012284	0.40976	0.00020703	505.2637848866853	42.252	0.25975	42.252	42.123	42.383	0					14	4	4	0	0	0	0.0080847	1	15936	15936		118.07	14.715	1	124080000			17800	1732	10910	10967	17097	17097					0.008860439694444722
KTLEGEFSV	9	Unmodified	_KTLEGEFSV_					0	0	0		YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;ENSG00000100811|ENST00000262238|YY1;YY2|p.L224Yfs*18|1|0.41|ENSG00000230797|chrX:21857148-21857148|G/-|frameshift_variant;ENSG00000230797|ENST00000429584|YY2	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1009.5208129882812	1	1009.52005	1008.51278	0.63079	0.0006368	0.66655	0.0006729	1.2973	0.0013097	1009.5199731081834	42.252	0.20804	42.252	42.175	42.383	0					5	3	2	0	0	0	0.029121	1	15956	15956		87.258	31.755	1	16627000			17801	1732	10910	10967	17098	17098					0.008860439694444722
KTLEGEFSV	9	Unmodified	_KTLEGEFSV_					0	0	0		YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;ENSG00000100811|ENST00000262238|YY1;YY2|p.L224Yfs*18|1|0.41|ENSG00000230797|chrX:21857148-21857148|G/-|frameshift_variant;ENSG00000230797|ENST00000429584|YY2	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	505.2639465332031	2	505.263665	1008.51278	0.40964	0.00020698	-0.11857	-5.9908E-05	0.29107	0.00014707	505.26355737443	42.2	0.41375	42.132	41.861	42.274	-0.068199					20	7	4	0	0	0	0.012596	1	15955	15955		106.94	14.287	1	191370000			17802	1732	10910	10967	17099	17099					0.008860439694444722
KTLEGEFSV	9	Unmodified	_KTLEGEFSV_					0	0	0		YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;ENSG00000100811|ENST00000262238|YY1;YY2|p.L224Yfs*18|1|0.41|ENSG00000230797|chrX:21857148-21857148|G/-|frameshift_variant;ENSG00000230797|ENST00000429584|YY2	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1009.520751953125	1	1009.52005	1008.51278	0.58116	0.00058669	-0.24664	-0.00024899	0.33452	0.0003377	1009.5199967931651	42.215	0.25856	42.146	42.016	42.274	-0.068199					9	4	3	0	0	0	0.17423	1	15977	15977		43.982	9.0498	1	37493000			17803	1732	10910	10967	17100	17100					0.008860439694444722
KTLEGIAAV	9	Unmodified	_KTLEGIAAV_					0	0	0		ENST00000578846.5_1_17:80018575-80018836:-|nuORF;ENSG00000169718|ENST00000306796|DUS1L;ENST00000580731.1_1_17:80016678-80019221:-|nuORF	ENST00000578846.5_1_17:80018575-80018836:-|nuORF	ENST00000578846.5_1_17:80018575-80018836:-|nuORF	MSMS	HCT116MG_D190212_S1	1	451.2708435058594	2	451.271293	900.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.067	1	38.067	37.567	38.567	0								0	0	0	0.08589	1	14241	14241		60.074	7.8056	1				17804	5089	10911	10968	17101	17101					0.07378955557283007
KTLERSYLL	9	Unmodified	_KTLERSYLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	HCT116MG_D190212_S1	1	561.828857421875	2	561.829506	1121.64446	-0.39711	-0.00022311	0.13012	7.3103E-05	-0.26699	-0.00015	561.8293028342955	38.358	0.36497	38.358	38.175	38.54	0					10	6	2	0	0	0	0.011132	1	14383	14383		110.55	38.63	1	25363000			17805	4914	10912	10969	17102	17102					0.08850274057181196
KTLERSYLL	9	Unmodified	_KTLERSYLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	HCT116MG_D190212_S2	2	561.8297119140625	2	561.829506	1121.64446	0.35284	0.00019824	-0.10655	-5.9863E-05	0.24629	0.00013838	561.8293135362705	38.39	0.31343	38.297	38.115	38.428	-0.09301					14	5	4	0	0	0	0.022505	1	14430	14430		93.938	36.216	1	69323000			17806	4914	10912	10969	17103	17103					0.08850274057181196
KTLGGFWDP	9	Unmodified	_KTLGGFWDP_					0	0	0		nc|ENSG00000129465|Q9Y572-3|RIPK3	nc|ENSG00000129465|Q9Y572-3|RIPK3	nc|ENSG00000129465|Q9Y572-3|RIPK3	MULTI-MSMS	HCT116MG_D190212_S2	2	510.76055908203125	2	510.761092	1019.50763	0.56523	0.0002887	-1.6666	-0.00085124	-1.1014	-0.00056254	510.7602432580852	26.118	0.31218	25.756	25.557	25.87	-0.36164					8	5	2	0	0	0	0.43775	1	9467	9467		20.454	0.039092	1	6748300			17807	9459	10913	10970	17104	17104					-0.0013421510253692759
KTLGKLWRL	9	Unmodified	_KTLGKLWRL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant;SOX9|p.L146Rfs*37|1|0.44|ENSG00000125398|chr17:72122724-72122724|T/-|frameshift_variant;nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8;SOX9|p.P307Cfs*77|1|0.27|ENSG00000125398|chr17:72123772-72123773|-/GT|frameshift_variant;SOX9|p.L135F|1|0.28|ENSG00000125398|chr17:72121794-72121794|C/T|missense_variant;SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant;SOX9|p.E293Qfs*4|1|0.58|ENSG00000125398|chr17:72123728-72123729|-/TCAA|frameshift_variant;SOX9|p.D290Rfs*6|1|0.39|ENSG00000125398|chr17:72123723-72123724|-/C|frameshift_variant;SOX9|p.R264Qfs*32|1|0.69|ENSG00000125398|chr17:72123639-72123640|-/G|frameshift_variant;SOX9|p.R257Afs*39|3|0.16|ENSG00000125398|chr17:72123621-72123622|-/G|frameshift_variant;nc|ENSG00000100146|P56693-2|SOX10;SOX9|p.P258Gfs*23|1|0.62|ENSG00000125398|chr17:72123621-72123622|-/GGGGC|frameshift_variant;SOX9|p.R257Gfs*23|1|0.54|ENSG00000125398|chr17:72123621-72123622|-/GG|frameshift_variant;SOX9|p.D274Wfs*6|1|0.18|ENSG00000125398|chr17:72123673-72123674|-/GT|frameshift_variant;SOX9|p.G256Rfs*24|1|0.34|ENSG00000125398|chr17:72123617-72123618|-/GA|frameshift_variant;SOX9|p.T243Pfs*10|1|0.44|ENSG00000125398|chr17:72123576-72123576|C/-|frameshift_variant;SOX9|p.G233Afs*20|1|0.34|ENSG00000125398|chr17:72123553-72123553|G/-|frameshift_variant;SOX9|p.Y172Lfs*80|1|0.57|ENSG00000125398|chr17:72122799-72122800|-/T|frameshift_variant;SOX9|p.P237Tfs*14|1|0.31|ENSG00000125398|chr17:72123564-72123565|CC/-|frameshift_variant;SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S2	2	372.2412109375	3	372.241359	1113.70225	-0.13769	-5.1254E-05	0.053898	2.0063E-05	-0.083792	-3.1191E-05	372.24130353759085	40.253	0.2598	40.18	39.998	40.258	-0.072838					11	4	4	0	0	0	0.022505	1	15187	15187		93.938	38.703	1	54418000			17808	2881	10914	10971	17105	17105					0.14994580773259258
KTLGKLWRL	9	Unmodified	_KTLGKLWRL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;SOX9|p.S408Tfs*64|1|0.62|ENSG00000125398|chr17:72124072-72124073|-/CACTA|frameshift_variant;SOX9|p.H413Lfs*58|1|0.37|ENSG00000125398|chr17:72124094-72124095|-/TG|frameshift_variant;SOX9|p.F423Sfs*47|1|0.36|ENSG00000125398|chr17:72124124-72124124|T/-|frameshift_variant;SOX9|p.Q416Nfs*54|1|0.48|ENSG00000125398|chr17:72124100-72124100|C/-|frameshift_variant;SOX9|p.I435Sfs*35|1|0.25|ENSG00000125398|chr17:72124157-72124157|C/-|frameshift_variant;SOX9|p.S448*|1|0.34|ENSG00000125398|chr17:72124200-72124201|CC/-|frameshift_variant;SOX9|p.G390Rfs*14|1|0.67|ENSG00000125398|chr17:72124021-72124022|-/CC|frameshift_variant;SOX9|p.H396Rfs*8|1|0.11|ENSG00000125398|chr17:72124040-72124041|-/CG|frameshift_variant;SOX9|p.E388*|1|0.21|ENSG00000125398|chr17:72124012-72124054|GAGCAGCGAGCCGGGCCAGTCCCAGCGAACGCACATCAAGACG/-|frameshift_variant;SOX9|p.A379Gfs*5|1|0.71|ENSG00000125398|chr17:72123990-72123991|-/GG|frameshift_variant;SOX9|p.P374Rfs*9|1|0.38|ENSG00000125398|chr17:72123974-72123974|C/-|frameshift_variant;SOX9|p.L146Rfs*37|1|0.44|ENSG00000125398|chr17:72122724-72122724|T/-|frameshift_variant;nc|ENSG00000100146|P56693|SOX10;ENSG00000005513|ENST00000293894|SOX8;SOX9|p.P307Cfs*77|1|0.27|ENSG00000125398|chr17:72123772-72123773|-/GT|frameshift_variant;SOX9|p.L135F|1|0.28|ENSG00000125398|chr17:72121794-72121794|C/T|missense_variant;SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant;SOX9|p.E293Qfs*4|1|0.58|ENSG00000125398|chr17:72123728-72123729|-/TCAA|frameshift_variant;SOX9|p.D290Rfs*6|1|0.39|ENSG00000125398|chr17:72123723-72123724|-/C|frameshift_variant;SOX9|p.R264Qfs*32|1|0.69|ENSG00000125398|chr17:72123639-72123640|-/G|frameshift_variant;SOX9|p.R257Afs*39|3|0.16|ENSG00000125398|chr17:72123621-72123622|-/G|frameshift_variant;nc|ENSG00000100146|P56693-2|SOX10;SOX9|p.P258Gfs*23|1|0.62|ENSG00000125398|chr17:72123621-72123622|-/GGGGC|frameshift_variant;SOX9|p.R257Gfs*23|1|0.54|ENSG00000125398|chr17:72123621-72123622|-/GG|frameshift_variant;SOX9|p.D274Wfs*6|1|0.18|ENSG00000125398|chr17:72123673-72123674|-/GT|frameshift_variant;SOX9|p.G256Rfs*24|1|0.34|ENSG00000125398|chr17:72123617-72123618|-/GA|frameshift_variant;SOX9|p.T243Pfs*10|1|0.44|ENSG00000125398|chr17:72123576-72123576|C/-|frameshift_variant;SOX9|p.G233Afs*20|1|0.34|ENSG00000125398|chr17:72123553-72123553|G/-|frameshift_variant;SOX9|p.Y172Lfs*80|1|0.57|ENSG00000125398|chr17:72122799-72122800|-/T|frameshift_variant;SOX9|p.P237Tfs*14|1|0.31|ENSG00000125398|chr17:72123564-72123565|CC/-|frameshift_variant;SOX9|p.V306Cfs*77|2|0.32|ENSG00000125398|chr17:72123769-72123769|G/-|frameshift_variant	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S2	2	557.8585205078125	2	557.858401	1113.70225	0.42242	0.00023565	-0.18756	-0.00010463	0.23486	0.00013102	557.8582908994204	40.253	0.2598	40.18	39.998	40.258	-0.072838					8	4	2	0	0	0	0.062126	1	15188	15188		83.429	20.856	1	29330000			17809	2881	10914	10971	17106	17106					0.14994580773259258
KTLKPGGA	8	Unmodified	_KTLKPGGA_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18;REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MSMS	HCT116MG_D190212_S3	3	386.2395935058594	2	386.239796	770.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.924	1	24.838	24.338	25.338	-0.08576								0	0	0	0.8837	1	8874	8874		9.3474	3.587	1		+		17810	13703;17234	10915	10972	17107	17107					0.0706243455990716
KTMEDTLMTV	10	Unmodified	_KTMEDTLMTV_					0	0	0		nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	MULTI-SECPEP	HCT116MG_D190212_S1	1	584.356689453125	2	584.78305	1167.55155	0.68661	0.00040152	0.16688	9.759E-05	0.85349	0.00049911	584.7829372800591	46.311	0.20685	46.311	46.182	46.389	0					5	3	2	0	0	0	0.078111	1	17576	17576		110.79	56.96	1	22028000			17811	3173	10916	10973	17108	17108					-0.025527347827164704
KTMEDTLMTV	10	Unmodified	_KTMEDTLMTV_					0	0	0		nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	nc|ENSG00000132254|P53365-2|ARFIP2	MSMS	HCT116MG_D190212_S2	2	584.78271484375	2	584.78305	1167.55155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.398	1	46.287	45.787	46.787	-0.11121								0	0	0	0.60706	1	17672	17672		42.312	0.35693	1				17812	3173	10916	10973	17109	17109					-0.025527347827164704
KTMKEKEEL	9	Unmodified	_KTMKEKEEL_					0	0	0		TAX1BP1|p.L352*|1|0.16|ENSG00000106052|chr7:27792017-27792017|T/-|frameshift_variant;nc|ENSG00000106052|Q86VP1-2|TAX1BP1;ENSG00000106052|ENST00000396319|TAX1BP1	TAX1BP1|p.L352*|1|0.16|ENSG00000106052|chr7:27792017-27792017|T/-|frameshift_variant	TAX1BP1|p.L352*|1|0.16|ENSG00000106052|chr7:27792017-27792017|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	379.2265625	3	379.205763	1134.59546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.055	1	16.055	15.555	16.555	0								0	0	0	0.76902	1	5377	5377		2.4985	0.59211	1				17813	2056	10917	10974	17110	17110					0.03354617705917917
KTNRFYWWAH	10	Unmodified	_KTNRFYWWAH_					0	0	0			REV__ENSG00000204007|ENST00000371763|GLT6D1	REV__ENSG00000204007|ENST00000371763|GLT6D1	MSMS	HCT116MG_D190212_S1	1	704.8502197265625	2	704.849096	1407.68364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.19	1	21.19	20.69	21.69	0								0	0	0	0.95507	1	7443	7443		3.5965	0.31518	1		+		17814	14177	10918	10975	17111	17111					-0.0038958086859111063
KTPAKRHKQ	9	Unmodified	_KTPAKRHKQ_					0	0	0		nc|ENSG00000142185|O94759-2|TRPM2;ENSG00000142185|ENST00000397928|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	nc|ENSG00000142185|O94759-2|TRPM2	MSMS	HCT116MG_D190212_S3	3	547.3557739257812	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.525	1	50.212	49.712	50.712	-0.31381								0	0	0	0.76809	1	19054	19054		7.609	0.88579	1				17815	3746	10919	10976	17112	17112					0.10899051448268438
KTPGPKRERL	10	Unmodified	_KTPGPKRERL_					0	0	0		TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	591.3035278320312	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.176	1	56.997	56.497	57.497	-0.17904								0	0	0	0.94551	1	22072	22072		5.7319	3.8876	1				17816	1786	10920	10977	17113	17113					0.12091589791225488
KTPKKKMKM	9	Unmodified	_KTPKKKMKM_					0	0	0		ENST00000491428.1_1_1:218458703-218475928:+|nuORF;ENSG00000067533|ENST00000366932|RRP15	ENST00000491428.1_1_1:218458703-218475928:+|nuORF	ENST00000491428.1_1_1:218458703-218475928:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	560.3400268554688	2	560.340672	1118.66679	0.30767	0.0001724	-0.49959	-0.00027994	-0.19192	-0.00010754	560.3402335186412	54.89	0.62553	54.572	54.354	54.98	-0.31774					22	11	3	0	0	0	0.7457	1	20530	20530		1.4819	1.4819	1	11784000			17817	1186	10921	10978	17114	17114					0.11220458929597044
KTPKNREK	8	Unmodified	_KTPKNREK_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MSMS	HCT116MG_D190212_S1	1	500.7985534667969	2	500.79854	999.582528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.12	1	52.12	51.62	52.62	0								0	0	0	0.8837	1	19927	19927		2.3027	0	1				17818	4380	10922	10979	17115	17115					0.08271967428697735
KTPLAPLAP	9	Unmodified	_KTPLAPLAP_					0	0	0		nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1;NAV1|p.K483Nfs*9|2|0.23|ENSG00000134369|chr1:201781090-201781090|A/-|frameshift_variant;nc|ENSG00000134369|Q8NEY1-6|NAV1;NAV1|p.K1211Efs*5|1|0.68|ENSG00000134369|chr1:201803700-201803701|AA/-|frameshift_variant	nc|ENSG00000134369|Q8NEY1-7|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	MSMS	HCT116MG_D190212_S1	1	454.2838439941406	2	454.284203	906.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.932	1	52.932	52.432	53.432	0								0	0	0	0.76718	1	20258	20258		10.824	0	1				17819	3284	10923	10980	17116	17116					0.09683849799546351
KTPLSKVHWTL	11	Unmodified	_KTPLSKVHWTL_					0	0	0			REV__SUSD2|p.Q190K|1|0.37|ENSG00000099994|chr22:24184264-24184264|C/A|missense_variant	REV__SUSD2|p.Q190K|1|0.37|ENSG00000099994|chr22:24184264-24184264|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	655.3824462890625	2	655.38498	1308.75541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.783	1	51.599	51.099	52.099	-0.18369								0	0	0	0.95574	1	19877	19877		3.3196	0.3244	1		+		17820	17604	10924	10981	17117	17117					0.11337913765282792
KTPLSKVHWTL	11	Unmodified	_KTPLSKVHWTL_					0	0	0			REV__SUSD2|p.Q190K|1|0.37|ENSG00000099994|chr22:24184264-24184264|C/A|missense_variant	REV__SUSD2|p.Q190K|1|0.37|ENSG00000099994|chr22:24184264-24184264|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	655.3826904296875	2	655.38498	1308.75541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.467	1	51.117	50.617	51.617	-0.35028								0	0	0	0.95731	1	19156	19156		2.4985	1.0166	1		+		17821	17604	10924	10981	17118	17118					0.11337913765282792
KTPPKPHI	8	Unmodified	_KTPPKPHI_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.E458Rfs*5|1|0.31|ENSG00000205038|chr8:109401582-109401583|-/A|frameshift_variant;PKHD1L1|p.K631Nfs*9|1|0.08|ENSG00000205038|chr8:109408125-109408125|A/-|frameshift_variant;PKHD1L1|p.N744Ffs*5|1|0.09|ENSG00000205038|chr8:109412406-109412407|-/ACTTTAACTTTAG|frameshift_variant;PKHD1L1|p.N718Tfs*31|1|0.35|ENSG00000205038|chr8:109412328-109412328|A/-|frameshift_variant;PKHD1L1|p.F723Lfs*26|1|0.15|ENSG00000205038|chr8:109412344-109412344|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.79|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	HCT116MG_D190212_S4	4	459.2803649902344	2	459.281995	916.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.247	1	50.897	50.397	51.397	-0.35028								0	0	0	0.8837	1	19067	19067		2.3027	0	1				17822	6364	10925	10982	17119	17119					0.08782385376639468
KTPPRRPVP	9	Unmodified	_KTPPRRPVP_					0	0	0		ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1	ENSG00000109458|ENST00000262994|GAB1	ENSG00000109458|ENST00000262994|GAB1	MSMS	HCT116MG_D190212_S1	1	524.3260498046875	2	524.324725	1046.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.392	1	47.392	46.892	47.892	0								0	0	0	0.76902	1	18005	18005		4.3292	0	1				17823	2208	10926	10983	17120	17120					0.11344550562330369
KTPRTRKRK	9	Unmodified	_KTPRTRKRK_					0	0	0			REV__RPL28|p.S137P|1|0.19|ENSG00000108107|chr19:55388327-55388327|T/C|missense_variant	REV__RPL28|p.S137P|1|0.19|ENSG00000108107|chr19:55388327-55388327|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	390.9223937988281	3	390.922912	1169.74691	-0.003252	-1.2713E-06	-0.89027	-0.00034803	-0.89352	-0.0003493	390.9224883604323	53.899	0.20385	53.899	53.771	53.975	0					9	3	3	0	0	0	0.7457	1	20678	20678		2.086	1.3883	1	50733000	+		17824	11337	10927	10984	17121	17121					0.168824046392956
KTPRTRKRK	9	Unmodified	_KTPRTRKRK_					0	0	0			REV__RPL28|p.S137P|1|0.19|ENSG00000108107|chr19:55388327-55388327|T/C|missense_variant	REV__RPL28|p.S137P|1|0.19|ENSG00000108107|chr19:55388327-55388327|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	390.922912	1169.74691	-0.003252	-1.2713E-06	-0.89027	-0.00034803	-0.89352	-0.0003493	390.9224883604323	53.899	0.20385	53.899	53.771	53.975	0	0	0	NaN	2.086	9	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50733000	+		17825	11337	10927	10984							0.168824046392956
KTPSLPRPL	9	Unmodified	_KTPSLPRPL_					0	0	0			REV__ENST00000555391.5_1_14:104201493-104210315:-|nuORF	REV__ENST00000555391.5_1_14:104201493-104210315:-|nuORF	MSMS	HCT116MG_D190212_S4	4	504.81573486328125	2	504.813659	1007.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.547	1	41.17	40.67	41.67	-0.37637								0	0	0	0.76902	1	15252	15252		4.3292	0	1		+		17826	10958	10928	10985	17122	17122					0.10926326093886018
KTPVKFWLLKI	11	Unmodified	_KTPVKFWLLKI_					0	0	0		UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	458.297119140625	3	458.295353	1371.86423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.843	1	50.488	49.988	50.988	-0.35483								0	0	0	0.9598	1	18904	18904		0.40827	0.31342	1				17827	18679	10929	10986	17123	17123					0.19317124735539437
KTQDTEDD	8	Unmodified	_KTQDTEDD_					0	0	0		ENSG00000055208|ENST00000637181|TAB2	ENSG00000055208|ENST00000637181|TAB2	ENSG00000055208|ENST00000637181|TAB2	MSMS	HCT116MG_D190212_S1	1	476.1986083984375	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.388	1	12.388	11.888	12.888	0								0	0	0	0.8837	1	3972	3972		0.69038	0	1				17828	1078	10930	10987	17124	17124					-0.09429177100389552
KTQELLKFV	9	Unmodified	_KTQELLKFV_					0	0	0			REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	REV__tr|U7SWQ5|U7SWQ5_FUSNU4-alpha-glucanotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01136PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	553.3328247070312	2	553.334424	1104.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.727	1	51.544	51.044	52.044	-0.18369								0	0	0	0.55145	1	19854	19854		26.268	4.7312	1		+		17829	17854	10931	10988	17125	17125					0.10615462062560255
KTRHRRIA	8	Unmodified	_KTRHRRIA_					0	0	0			REV__ENST00000412446.5_1_9:98575947-98576046:-|nuORF	REV__ENST00000412446.5_1_9:98575947-98576046:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	519.3248901367188	2	519.325591	1036.63663	0.25091	0.0001303	-1.1694	-0.00060727	-0.91844	-0.00047697	519.3246449559914	50.063	0.61816	50.063	49.75	50.368	0					15	11	2	0	0	0	0.85789	1	19091	19091		3.9444	3.9444	1	11040000	+		17830	15448	10932	10989	17126	17126					0.11977604370940753
KTRRQARQI	9	Unmodified	_KTRRQARQI_					0	0	0		tr|U7SRB0|U7SRB0_FUSNUSmallribosomalsubunitproteinuS4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsDPE=3SV=1	tr|U7SRB0|U7SRB0_FUSNUSmallribosomalsubunitproteinuS4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsDPE=3SV=1	tr|U7SRB0|U7SRB0_FUSNUSmallribosomalsubunitproteinuS4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsDPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	386.2383728027344	3	386.2389	1155.69487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.679	1	45.679	45.179	46.179	0								0	0	0	0.76954	1	17313	17313		2.4985	0	1				17831	18398	10933	10990	17127	17127					0.12325241225562422
KTSASHLPPPQ	11	Unmodified	_KTSASHLPPPQ_					0	0	0			REV__ENST00000309890.11_1_17:3827865-3828672:-|nuORF	REV__ENST00000309890.11_1_17:3827865-3828672:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	581.81396484375	2	581.814387	1161.61422	0.49337	0.00028705	0.086225	5.0167E-05	0.57959	0.00033722	581.814407646221	29.144	0.92198	28.828	28.352	29.274	-0.31613					50	17	4	0	0	0	0.73474	1	10797	10797		8.9762	1.3673	1	131000000	+		17832	14827	10934	10991	17128	17128					0.039879153919855526
KTSDFLKVL	9	Unmodified	_KTSDFLKVL_					0	0	0		ARPC2|p.R279H|1|0.43|ENSG00000163466|chr2:218249879-218249879|G/A|missense_variant;ENST00000487321.1_1_2:219114510-219118635:+|nuORF;ENSG00000163466|ENST00000315717|ARPC2	ARPC2|p.R279H|1|0.43|ENSG00000163466|chr2:218249879-218249879|G/A|missense_variant	ARPC2|p.R279H|1|0.43|ENSG00000163466|chr2:218249879-218249879|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	525.812744140625	2	525.813325	1049.6121	0.31129	0.00016368	-4.214	-0.0022158	-3.9027	-0.0020521	525.8107417308245	47.518	0.42875	47.518	47.217	47.646	0					14	8	2	0	0	0	0.0056012	1	18081	18081		132.38	39.726	1	42926000			17833	191	10935	10992	17129	17129					0.08927486654192762
KTSDFLKVL	9	Unmodified	_KTSDFLKVL_					0	0	0		ARPC2|p.R279H|1|0.43|ENSG00000163466|chr2:218249879-218249879|G/A|missense_variant;ENST00000487321.1_1_2:219114510-219118635:+|nuORF;ENSG00000163466|ENST00000315717|ARPC2	ARPC2|p.R279H|1|0.43|ENSG00000163466|chr2:218249879-218249879|G/A|missense_variant	ARPC2|p.R279H|1|0.43|ENSG00000163466|chr2:218249879-218249879|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	525.8136596679688	2	525.813325	1049.6121	0.69652	0.00036624	-0.4632	-0.00024356	0.23332	0.00012268	525.812749406647	47.653	0.87871	47.52	46.911	47.79	-0.13282					23	15	4	0	0	0	0.0035136	1	18178	18178		168.54	68.739	1	113920000			17834	191	10935	10992	17130	17130					0.08927486654192762
KTSFGEIATVV	11	Unmodified	_KTSFGEIATVV_					0	0	0			REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF	REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	384.53997802734375	3	384.548406	1150.62339	0.072902	2.8034E-05	-0.72621	-0.00027926	-0.65331	-0.00025123	384.8824166040236	27.849	0.20775	27.528	27.398	27.606	-0.32157					7	3	3	0	0	0	0.36187	1	10012	10012		17.572	10.095	1	4010000	+		17835	13836	10936	10993	17131	17131					0.054102639576512956
KTSFGEIATVV	11	Unmodified	_KTSFGEIATVV_					0	0	0			REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF	REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	384.548406	1150.62339	0.12283	4.7234E-05	-0.78299	-0.0003011	-0.66016	-0.00025387	384.88248018937713	27.679	0.20792	27.491	27.361	27.569	-0.18847	-0.018433	-1.3036E-05	NaN	13.535	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12424000	+		17836	13836	10936	10993							0.054102639576512956
KTTKAKVRK	9	Unmodified	_KTTKAKVRK_					0	0	0			REV__MYL9|p.A6V|1|0.11|ENSG00000101335|chr20:36544901-36544901|C/T|missense_variant	REV__MYL9|p.A6V|1|0.11|ENSG00000101335|chr20:36544901-36544901|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	530.353759765625	2	530.353483	1058.69241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.512	1	58.512	58.012	59.012	0								0	0	0	0.76978	1	22542	22542		1.6526	1.0511	1		+		17837	17050	10937	10994	17132	17132					0.16541392767885554
KTTKAKVRK	9	Unmodified	_KTTKAKVRK_					0	0	0			REV__MYL9|p.A6V|1|0.11|ENSG00000101335|chr20:36544901-36544901|C/T|missense_variant	REV__MYL9|p.A6V|1|0.11|ENSG00000101335|chr20:36544901-36544901|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	530.3536376953125	2	530.353483	1058.69241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.77	1	58.604	58.104	59.104	-0.1653								0	0	0	0.76978	1	22721	22721		1.6526	1.1279	1		+		17838	17050	10937	10994	17133	17133					0.16541392767885554
KTTTTALK	8	Unmodified	_KTTTTALK_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S4	4	432.26239013671875	2	432.263468	862.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.405	1	45.033	44.533	45.533	-0.37266								0	0	0	0.8837	1	16748	16748		4.3292	0	1				17839	5624	10938	10995	17134	17134					0.07562669040225956
KTTYWLWYLHT	11	Unmodified	_KTTYWLWYLHT_					0	0	0			REV__nc|ENSG00000177595|Q9HB75-3|PIDD1	REV__nc|ENSG00000177595|Q9HB75-3|PIDD1	MULTI-MSMS	HCT116MG_D190212_S4	4	756.3884887695312	2	756.387719	1510.76089	0.75821	0.0005735	0.85346	0.00064555	1.6117	0.001219	756.3884300114713	31.809	0.88231	31.434	31.226	32.109	-0.37529					25	16	2	0	0	0	0.74191	1	11798	11798		5.2969	2.3016	1	6629100	+		17840	17227	10939	10996	17135	17135					0.025935925570820473
KTVDAEIRY	9	Unmodified	_KTVDAEIRY_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	MULTI-SECPEP	HCT116MG_D190212_S1	1	548.2885131835938	2	547.795663	1093.57677	0.50245	0.00027524	3.606	0.0019753	4.1084	0.0022506	547.7972136738612	31.831	0.26075	31.831	31.596	31.857	0					5	4	2	0	0	0	0.2025	1	11657	11657		13.906	0	1	3730300	+		17841	12114	10940	10997	17136	17136					0.03372824126358864
KTVPERAR	8	Unmodified	_KTVPERAR_					0	0	0			REV__MAGEA1|p.E127D|1|0.66|ENSG00000198681|chrX:153182770-153182770|A/C|missense_variant	REV__MAGEA1|p.E127D|1|0.66|ENSG00000198681|chrX:153182770-153182770|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2899475097656	2	478.785433	955.556313	-0.089053	-4.2637E-05	0.14808	7.09E-05	0.05903	2.8263E-05	478.785308759809	49.773	1.6977	49.609	49.127	50.825	-0.16369					78	32	4	0	0	0	0.73234	1	18934	18934		19.257	4.4187	1	713270000	+		17842	13756	10941	10998	17137	17137					0.0767569825721921
KVAHLILRRQ	10	Unmodified	_KVAHLILRRQ_					0	0	0			REV__OBSL1|p.H679R|1|0.3|ENSG00000124006|chr2:219566928-219566928|T/C|missense_variant	REV__OBSL1|p.H679R|1|0.3|ENSG00000124006|chr2:219566928-219566928|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	617.3988647460938	2	617.398756	1232.78296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.263	1	62.263	61.763	62.763	0								0	0	0	0.96377	1	24039	24039		1.6526	0.17072	1		+		17843	17360	10942	10999	17138	17138					0.17587861816195982
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	HCT116MG_D190212_S1	1	426.271240234375	2	426.271096	850.527639	0.25676	0.00010945	-0.31817	-0.00013563	-0.061413	-2.6179E-05	426.2709960372674	28.825	0.31326	28.825	28.694	29.007	0					9	5	2	0	0	0	0.16144	1	10525	10525		46.021	3.053	1	10706000			17844	4012	10943	11000	17139	17139					0.09639580628083877
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	HCT116MG_D190212_S2	2	426.2712097167969	2	426.271096	850.527639	0.27023	0.00011519	0.27934	0.00011907	0.54957	0.00023427	426.27109661265257	29.427	0.41084	29.126	28.878	29.289	-0.30095					13	7	2	0	0	0	0.11731	1	10768	10768		54.774	2.0805	1	22611000			17845	4012	10943	11000	17140	17140					0.09639580628083877
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	443.7645568847656	2	443.272493	884.530432	-0.065669	-2.9109E-05	0.50564	0.00022414	0.43997	0.00019503	443.2727784839154	49.71	0.82549	49.71	49.44	50.266	0					19	15	2	0	0	0	0.33446	1	19088	19088		2.3027	0	1	11116000			17846	8015	10944	11001	17141	17141					0.08354848805606707
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	442.93292236328125	2	443.272493	884.530432	-0.091676	-4.0637E-05	0.54784	0.00024284	0.45616	0.0002022	443.2727228404647	51.22	0.67065	51.22	50.73	51.4	0					16	12	2	0	0	0	0.33109	1	19503	19503		5.2307	0	1	51039000			17847	8015	10944	11001	17142	17142					0.08354848805606707
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	442.9325256347656	2	443.272493	884.530432	-0.16217	-7.1887E-05	2.9494	0.0013074	2.7873	0.0012355	443.2746382023599	50.625	0.20609	50.625	50.472	50.678	0					5	3	2	0	0	0	0.33109	1	19276	19276		2.3027	0	1	3093600			17848	8015	10944	11001	17143	17143					0.08354848805606707
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	443.2728271484375	2	443.272493	884.530432	0.37637	0.00016683	0.035112	1.5564E-05	0.41148	0.0001824	443.2724297231293	46.303	0.67907	45.99	45.864	46.543	-0.31237					23	15	2	0	0	0	0.8672	1	17340	17340		2.3027	0	1	9117600			17849	8015	10944	11001	17144	17144					0.08354848805606707
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	443.2723693847656	2	443.272493	884.530432	0.23018	0.00010203	0.17685	7.8395E-05	0.40704	0.00018043	443.27254796680796	48.174	2.1198	47.807	47.191	49.311	-0.36728					140	52	5	0	0	0	0.8672	1	17616	17616		2.3027	0	1	893590000			17850	8015	10944	11001	17145	17145					0.08354848805606707
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	443.272493	884.530432	0.18991	8.4183E-05	-0.078155	-3.4644E-05	0.11176	4.9539E-05	443.27238782323025	46.041	0.15629	46.041	45.922	46.079	0	0.046812	2.3407E-05	NaN	2.3027	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12465000			17851	8015	10944	11001							0.08354848805606707
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	443.272493	884.530432	-0.099175	-4.3962E-05	-0.12952	-5.7411E-05	-0.22869	-0.00010137	443.27242721430525	48.036	0.65983	48.036	47.646	48.306	0	0.10312	-0.0002293	NaN	2.3027	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34022000			17852	8015	10944	11001							0.08354848805606707
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	443.272493	884.530432	0.21087	9.3473E-05	0.12997	5.7613E-05	0.34084	0.00015109	443.2725102932248	48.273	2.1306	47.957	47.21	49.341	-0.31596	0.023445	7.4797E-07	NaN	2.3027	104	40	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568830000			17853	8015	10944	11001							0.08354848805606707
KVAQRRGA	8	Unmodified	_KVAQRRGA_					0	0	0		ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	ENST00000455282.1_1_19:11979684-11979720:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	443.272493	884.530432	0.052371	2.3215E-05	0.40236	0.00017836	0.45474	0.00020157	443.2725746263256	50.14	1.1986	49.824	49.394	50.592	-0.31525	0.057483	-3.088E-05	NaN	2.3027	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4363400			17854	8015	10944	11001							0.08354848805606707
KVCKIIFP	8	Unmodified	_KVCKIIFP_					0	0	0		ENST00000534766.1_1_11:45967557-45971796:-|nuORF	ENST00000534766.1_1_11:45967557-45971796:-|nuORF	ENST00000534766.1_1_11:45967557-45971796:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	474.2908935546875	2	474.290974	946.567395	0.34545	0.00016384	-0.21759	-0.0001032	0.12786	6.0645E-05	474.29074881682317	45.033	1.4052	44.724	44.265	45.67	-0.30926					63	30	3	0	0	0	0.8672	1	16949	16949		2.3027	0	1	17552000			17855	8654	10945	11002	17146	17146					0.09197384307151424
KVCKIIFPL	9	Unmodified	_KVCKIIFPL_					0	0	0		ENST00000534766.1_1_11:45967557-45971796:-|nuORF	ENST00000534766.1_1_11:45967557-45971796:-|nuORF	ENST00000534766.1_1_11:45967557-45971796:-|nuORF	MSMS	HCT116MG_D190212_S3	3	530.831787109375	2	530.833006	1059.65146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.818	1	52.512	52.012	53.012	-0.30639								0	0	0	0.76967	1	19976	19976		2.0598	0.21551	1				17856	8654	10946	11003	17147	17147					0.12401915404052488
KVCKPEPL	8	Unmodified	_KVCKPEPL_					0	0	0			REV__nc|ENSG00000134440|O43776-2|NARS1	REV__nc|ENSG00000134440|O43776-2|NARS1	MSMS	HCT116MG_D190212_S3	3	457.26434326171875	2	457.262413	912.510274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.395	1	44.088	43.588	44.588	-0.30759								0	0	0	0.8837	1	16595	16595		8.5933	0.68312	1		+		17857	12056	10947	11004	17148	17148					0.05051917030777986
KVCKVRLLRT	10	Unmodified	_KVCKVRLLRT_					0	0	0			REV__OBSL1|p.T506R|1|0.24|ENSG00000124006|chr2:219567735-219567735|G/C|missense_variant	REV__OBSL1|p.T506R|1|0.24|ENSG00000124006|chr2:219567735-219567735|G/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	608.3939819335938	2	608.389542	1214.76453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.633	1	60.633	60.133	61.133	0								0	0	0	0.95507	1	23376	23376		3.5965	1.9439	1		+		17858	17362	10948	11005	17149	17149					0.16573983849934848
KVCKVRLLRT	10	Unmodified	_KVCKVRLLRT_					0	0	0			REV__OBSL1|p.T506R|1|0.24|ENSG00000124006|chr2:219567735-219567735|G/C|missense_variant	REV__OBSL1|p.T506R|1|0.24|ENSG00000124006|chr2:219567735-219567735|G/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	608.3895874023438	2	608.389542	1214.76453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.184	1	61.184	60.684	61.684	0								0	0	0	0.95507	1	23603	23603		3.5965	1.9439	1		+		17859	17362	10948	11005	17150	17150					0.16573983849934848
KVCLLLALY	9	Unmodified	_KVCLLLALY_					0	0	0		ENST00000467785.5_1_7:158448006-158486027:-|nuORF	ENST00000467785.5_1_7:158448006-158486027:-|nuORF	ENST00000467785.5_1_7:158448006-158486027:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	518.3172607421875	2	518.317189	1034.61982	0.2939	0.00015233	-0.059589	-3.0886E-05	0.23431	0.00012145	518.3170566828438	46.897	2.2956	46.583	45.846	48.142	-0.31405					102	48	3	0	0	0	0.70732	1	17444	17444		4.756	1.8668	1	28611000			17860	8119	10949	11006	17151	17151					0.10389922650097105
KVCVGWIWV	9	Unmodified	_KVCVGWIWV_					0	0	0		ENST00000484787.1_1_6:31602529-31603076:+|nuORF	ENST00000484787.1_1_6:31602529-31603076:+|nuORF	ENST00000484787.1_1_6:31602529-31603076:+|nuORF	MSMS	HCT116MG_D190212_S1	1	545.2987670898438	2	545.29933	1088.58411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.174	1	61.174	60.674	61.674	0								0	0	0	0.76902	1	23599	23599		4.3292	0	1				17861	8281	10950	11007	17152	17152					0.04335885193108879
KVDEAVAVL	9	Unmodified	_KVDEAVAVL_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1;ENST00000469174.1_1_X:73802925-73803237:-|nuORF;ENST00000549280.1_1_12:60205892-60206354:+|nuORF;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MSMS	HCT116MG_D190212_S2	2	943.5464477539062	1	943.545874	942.538597	0.65949	0.00062225	1.9302	0.0018212	2.5897	0.0024435	943.5463519896515	40.148	0.31229	40.076	39.945	40.258	-0.072838					7	5	2	0	0	0	0.047849	1	15166	15166		75.761	10.526	1	18146000			17862	1241	10951	11008	17153	17153					0.06502938211713172
KVDEAVAVL	9	Unmodified	_KVDEAVAVL_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1;ENST00000469174.1_1_X:73802925-73803237:-|nuORF;ENST00000549280.1_1_12:60205892-60206354:+|nuORF;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MSMS	HCT116MG_D190212_S3	3	472.2766418457031	2	472.276575	942.538597	0.21125	9.9766E-05	-0.8203	-0.00038741	-0.60906	-0.00028764	472.27600702246286	40.457	0.52066	40.156	39.955	40.476	-0.30161					12	9	2	0	0	0	0.10244	1	15029	15029		57.722	5.4536	1	9690900			17863	1241	10951	11008	17154	17154					0.06502938211713172
KVDEAVAVL	9	Unmodified	_KVDEAVAVL_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1;ENST00000469174.1_1_X:73802925-73803237:-|nuORF;ENST00000549280.1_1_12:60205892-60206354:+|nuORF;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MSMS	HCT116MG_D190212_S3	3	943.54638671875	1	943.545874	942.538597	0.63591	0.00060001	-0.71935	-0.00067874	-0.083439	-7.8729E-05	943.5455801309788	40.464	0.20774	40.162	40.059	40.267	-0.30161					6	3	2	0	0	0	0.066823	1	15050	15050		66.457	22.598	1	2712300			17864	1241	10951	11008	17155	17155					0.06502938211713172
KVDQEVKL	8	Unmodified	_KVDQEVKL_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000592578.5_1_17:40985648-40985795:+|nuORF;ENST00000585805.5_1_17:40985648-40985726:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	HCT116MG_D190212_S1	1	479.7820129394531	2	479.782025	957.549496	0.22904	0.00010989	0.042928	2.0596E-05	0.27197	0.00013049	479.78207518399506	27.93	0.26036	27.93	27.8	28.06	0					8	4	2	0	0	0	0.079387	1	10177	10177		99.755	17.865	1	13954000			17865	3143	10952	11009	17156	17156					0.06902340586009359
KVDQEVKL	8	Unmodified	_KVDQEVKL_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000592578.5_1_17:40985648-40985795:+|nuORF;ENST00000585805.5_1_17:40985648-40985726:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	HCT116MG_D190212_S2	2	479.7821350097656	2	479.782025	957.549496	0.19402	9.3088E-05	0.090017	4.3189E-05	0.28404	0.00013628	479.7819858916295	28.437	0.20609	28.107	28.029	28.236	-0.32987					5	3	2	0	0	0	0.061818	1	10396	10396		110.67	18.183	1	46535000			17866	3143	10952	11009	17157	17157					0.06902340586009359
KVDQEVKL	8	Unmodified	_KVDQEVKL_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000592578.5_1_17:40985648-40985795:+|nuORF;ENST00000585805.5_1_17:40985648-40985726:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	HCT116MG_D190212_S3	3	479.7822570800781	2	479.782025	957.549496	0.1731	8.305E-05	0.15817	7.5887E-05	0.33127	0.00015894	479.7821795761283	28.357	0.26114	28.151	27.968	28.229	-0.20593					8	4	2	0	0	0	0.16987	1	10264	10264		79.596	0.86826	1	6570100			17867	3143	10952	11009	17158	17158					0.06902340586009359
KVDYNRLGY	9	Unmodified	_KVDYNRLGY_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S1	1	564.2959594726562	2	564.29583	1126.57711	0.34942	0.00019717	-0.30652	-0.00017297	0.042894	2.4205E-05	564.7971448735567	30.191	0.24705	30.191	30.049	30.296	0					8	4	2	0	0	0	0.031089	1	11096	11096		85.272	47.096	1	15720000			17868	6563	10953	11010	17159	17159					0.018882438462242135
KVDYNRLGY	9	Unmodified	_KVDYNRLGY_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S2	2	564.7981567382812	2	564.29583	1126.57711	0.20044	0.00011311	0.66762	0.00037673	0.86806	0.00048984	564.2957989409845	30.543	0.30837	30.259	30.13	30.439	-0.28453					11	5	3	0	0	0	0.053544	1	11252	11252		72.968	41.7	1	56687000			17869	6563	10953	11010	17160	17160					0.018882438462242135
KVEASYFYQR	10	Unmodified	_KVEASYFYQR_					0	0	0		ENST00000424308.1_1_1:59487199-59488683:+|nuORF	ENST00000424308.1_1_1:59487199-59488683:+|nuORF	ENST00000424308.1_1_1:59487199-59488683:+|nuORF	MSMS	HCT116MG_D190212_S1	1	430.74041748046875	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.335	1	15.335	14.835	15.835	0								0	0	0	0.96263	1	5087	5087		1.9064	0.1641	1				17870	7805	10954	11011	17161	17161					0.0072018456346540916
KVEEDFCL	8	Unmodified	_KVEEDFCL_					0	0	0		ZNF500|p.P312Hfs*29|1|0.17|ENSG00000103199|chr16:4752884-4752884|G/-|frameshift_variant;nc|ENSG00000103199|O60304-2|ZNF500;ENSG00000103199|ENST00000219478|ZNF500	ZNF500|p.P312Hfs*29|1|0.17|ENSG00000103199|chr16:4752884-4752884|G/-|frameshift_variant	ZNF500|p.P312Hfs*29|1|0.17|ENSG00000103199|chr16:4752884-4752884|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	491.7304382324219	2	491.731143	981.447733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.576	1	32.35	31.85	32.85	-0.22544								0	0	0	0.81076	1	12057	12057		21.747	0	1				17871	1881	10955	11012	17162	17162					-0.04373273828082347
KVEILRKMLQ	10	Unmodified	_KVEILRKMLQ_					0	0	0		ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MSMS	HCT116MG_D190212_S1	1	629.3900146484375	2	629.389208	1256.76386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.894	1	53.894	53.394	54.394	0								0	0	0	0.94746	1	20652	20652		5.2969	0	1				17872	178	10956	11013	17163	17163					0.1457514441026433
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	HCT116MG_D190212_S1	1	528.8082885742188	2	528.808042	1055.60153	0.39814	0.00021054	0.13608	7.1961E-05	0.53422	0.0002825	528.8080434106051	46.829	0.31139	46.829	46.647	46.958	0					15	5	4	0	0	0	0.029378	2	17801	17787;17801		103.42	55.074	1	49217000			17873	3376	10957	11014	17164;17165	17165					0.07595503999755238
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	HCT116MG_D190212_S2	2	528.8084106445312	2	528.808042	1055.60153	0.79742	0.00042168	0.016699	8.8306E-06	0.81412	0.00043051	528.8079876967312	46.968	0.51393	46.846	46.512	47.026	-0.12175					22	9	3	0	0	0	0.012721	1	17888	17888		137.42	91.403	1	92641000			17874	3376	10957	11014	17166	17166					0.07595503999755238
KVFGNEIKL	9	Unmodified	_KVFGNEIKL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S1	1	524.313232421875	2	524.313492	1046.61243	0.082244	4.3121E-05	-0.2968	-0.00015562	-0.21455	-0.00011249	524.3132009082592	40.664	0.30656	40.664	40.487	40.794	0					10	5	3	0	0	0	0.011034	1	15298	15298		110.79	35.864	1	27256000			17875	2442	10958	11015	17167	17167					0.09098906374038052
KVFGNEIKL	9	Unmodified	_KVFGNEIKL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S2	2	524.3132934570312	2	524.313492	1046.61243	0.58107	0.00030466	-0.39464	-0.00020691	0.18643	9.7749E-05	524.313252030038	40.668	0.30901	40.599	40.468	40.777	-0.069626					8	5	2	0	0	0	0.0047539	1	15353	15353		139.78	54.14	1	66853000			17876	2442	10958	11015	17168	17168					0.09098906374038052
KVFIKENNGKE	11	Unmodified	_KVFIKENNGKE_					0	0	0		ENST00000496617.2_1_7:8099749-8118291:+|nuORF;ENSG00000106415|ENST00000223145|GLCCI1	ENST00000496617.2_1_7:8099749-8118291:+|nuORF	ENST00000496617.2_1_7:8099749-8118291:+|nuORF	MSMS	HCT116MG_D190212_S1	1	653.3594360351562	2	653.361702	1304.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.322	1	62.322	61.822	62.822	0								0	0	0	0.9598	1	24063	24063		1.1933	0.735	1				17877	2078	10959	11016	17169	17169					0.06868429143332833
KVFSAFITV	9	Unmodified	_KVFSAFITV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MSMS	HCT116MG_D190212_S2	2	506.29718017578125	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.247	1	54.057	53.557	54.557	-0.1894								0	0	0	0.077161	1	20880	20880		62.573	20.478	1				17878	1607	10960	11017	17170	17170					0.07520118971024203
KVGENYSDAP	10	Unmodified	_KVGENYSDAP_					0	0	0			REV__PTK2|p.P912Lfs*17|2|0.43|ENSG00000169398|chr8:140668399-140668399|G/-|frameshift_variant	REV__PTK2|p.P912Lfs*17|2|0.43|ENSG00000169398|chr8:140668399-140668399|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	540.2730712890625	2	540.253828	1078.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.419	1	25.049	24.549	25.549	-0.36993								0	0	0	0.89062	1	9153	9153		17.113	1.8644	1		+		17879	13243	10961	11018	17171	17171					-0.04300332041339061
KVGGVGAA	8	Unmodified	_KVGGVGAA_					0	0	0			REV__ENST00000545882.5_1_1:95391192-95391243:-|nuORF	REV__ENST00000545882.5_1_1:95391192-95391243:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	658.388916015625	1	658.388251	657.380974	0.61573	0.00040539	0.40507	0.00026669	1.0208	0.00067208	658.3884442621371	25.893	0.20789	25.524	25.394	25.602	-0.36914					6	3	2	0	0	0	0.66848	1	9356	9356		26.341	0	1	19484000	+		17880	16396	10962	11019	17172	17172					0.03857903462994727
KVHKARPVPLA	11	Unmodified	_KVHKARPVPLA_					0	0	0			REV__ENSG00000239789|ENST00000285298|MRPS17	REV__ENSG00000239789|ENST00000285298|MRPS17	MSMS	HCT116MG_D190212_S1	1	608.38720703125	2	608.387857	1214.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.773	1	61.773	61.273	62.273	0								0	0	0	0.95581	1	23841	23841		3.2813	1.6287	1		+		17881	14346	10963	11020	17173	17173					0.16237057067610294
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		FBXO28|p.E209Kfs*7|1|0.11|ENSG00000143756|chr1:224153247-224153259|ATGGAGTACTTTG/-|frameshift_variant;ENSG00000143756|ENST00000366862|FBXO28	FBXO28|p.E209Kfs*7|1|0.11|ENSG00000143756|chr1:224153247-224153259|ATGGAGTACTTTG/-|frameshift_variant	FBXO28|p.E209Kfs*7|1|0.11|ENSG00000143756|chr1:224153247-224153259|ATGGAGTACTTTG/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	567.7890625	2	567.829506	1133.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.8	1	38.8	38.3	39.3	0								0	0	0	0.17014	1	14537	14537		49.527	22.644	1				17882	3832	10964	11021	17174	17174					0.08298274057165145
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		FBXO28|p.E209Kfs*7|1|0.11|ENSG00000143756|chr1:224153247-224153259|ATGGAGTACTTTG/-|frameshift_variant;ENSG00000143756|ENST00000366862|FBXO28	FBXO28|p.E209Kfs*7|1|0.11|ENSG00000143756|chr1:224153247-224153259|ATGGAGTACTTTG/-|frameshift_variant	FBXO28|p.E209Kfs*7|1|0.11|ENSG00000143756|chr1:224153247-224153259|ATGGAGTACTTTG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	567.829345703125	2	567.829506	1133.64446	0.38914	0.00022097	-0.57611	-0.00032713	-0.18697	-0.00010617	567.8293186746192	39.043	0.20755	38.742	38.561	38.768	-0.30137					5	3	2	0	0	0	0.13424	1	14492	14492		51.415	21.575	1	6277100			17883	3832	10964	11021	17175	17175					0.08298274057165145
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		FBXO28|p.E209Kfs*7|1|0.11|ENSG00000143756|chr1:224153247-224153259|ATGGAGTACTTTG/-|frameshift_variant;ENSG00000143756|ENST00000366862|FBXO28	FBXO28|p.E209Kfs*7|1|0.11|ENSG00000143756|chr1:224153247-224153259|ATGGAGTACTTTG/-|frameshift_variant	FBXO28|p.E209Kfs*7|1|0.11|ENSG00000143756|chr1:224153247-224153259|ATGGAGTACTTTG/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	567.829506	1133.64446	0.3245	0.00018426	0.015001	8.5179E-06	0.3395	0.00019278	567.8295934195936	38.761	0.31393	38.677	38.492	38.806	-0.084618	-0.03276	0.00036892	NaN	51.415	15	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61052000			17884	3832	10964	11021							0.08298274057165145
KVIDTQQKV	9	Unmodified	_KVIDTQQKV_					0	0	0		ENST00000507185.1_1_5:139661015-139682658:-|nuORF;ENSG00000113068|ENST00000261813|PFDN1	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	529.8138427734375	2	529.813856	1057.61316	0.4851	0.00025701	-0.078476	-4.1578E-05	0.40662	0.00021543	529.8135441889051	20.669	0.26039	20.669	20.54	20.8	0					8	4	3	0	0	0	0.0064416	1	7263	7263		125.04	52.07	1	5869000			17885	2367	10965	11022	17176	17176					0.0866570102307378
KVIDTQQKV	9	Unmodified	_KVIDTQQKV_					0	0	0		ENST00000507185.1_1_5:139661015-139682658:-|nuORF;ENSG00000113068|ENST00000261813|PFDN1	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	529.81396484375	2	529.813856	1057.61316	0.37311	0.00019768	-0.03461	-1.8337E-05	0.3385	0.00017934	529.813640538655	21.319	0.31056	20.936	20.807	21.117	-0.38288					9	5	3	0	0	0	0.095731	1	7507	7507		59.052	18.813	1	26808000			17886	2367	10965	11022	17177	17177					0.0866570102307378
KVIDYVPGI	9	Unmodified	_KVIDYVPGI_					0	0	0		TIPARP|p.I342Tfs*25|1|0.42|ENSG00000163659|chr3:156694125-156694128|TATT/-|frameshift_variant;ENSG00000163659|ENST00000295924|TIPARP	TIPARP|p.I342Tfs*25|1|0.42|ENSG00000163659|chr3:156694125-156694128|TATT/-|frameshift_variant	TIPARP|p.I342Tfs*25|1|0.42|ENSG00000163659|chr3:156694125-156694128|TATT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	502.29510498046875	2	502.294768	1002.57498	0.63587	0.00031939	-0.65958	-0.0003313	-0.023713	-1.1911E-05	502.29462776389164	47.162	0.87815	47.041	46.871	47.75	-0.12175					20	10	3	0	0	0	0.049545	1	17994	17994		74.929	33.089	1	60885000			17887	4620	10966	11023	17178	17178					0.07379815108413368
KVIKKVKKKK	10	Unmodified	_KVIKKVKKKK_					0	0	0		nc|ENSG00000167525|Q8NCQ7-2|PROCA1;nc|ENSG00000167525|Q8NCQ7-3|PROCA1;nc|ENSG00000167525|Q8NCQ7|PROCA1;ENSG00000167525|ENST00000682792|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	MSMS	HCT116MG_D190212_S2	2	614.3378295898438	2	613.955375	1225.8962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.103	1	33.928	33.428	34.428	-0.17512								0	0	0	0.9696	1	12677	12677		0.35063	0.35063	1				17888	4927	10967	11024	17179	17179					0.29228537209337446
KVIMLLQF	8	Unmodified	_KVIMLLQF_					0	0	0			REV__ENST00000522136.5_1_5:178032355-178045581:-|nuORF	REV__ENST00000522136.5_1_5:178032355-178045581:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	496.3038330078125	2	496.304081	990.59361	0.44576	0.00022123	-0.23633	-0.00011729	0.20943	0.00010394	496.3038895044579	53.221	1.1975	52.886	52.15	53.348	-0.33473					51	22	3	0	0	0	0.86564	1	19797	19797		2.5775	0	1	8685400	+		17889	16244	10968	11025	17180	17180					0.09793653478629949
KVIQYKRAKLE	11	Unmodified	_KVIQYKRAKLE_					0	0	0		nc|ENSG00000159625|Q8IY82-2|DRC7;ENSG00000159625|ENST00000360716|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-SECPEP	HCT116MG_D190212_S1	1	688.92626953125	2	688.424636	1374.83472	0.65071	0.00044797	-0.61736	-0.00042501	0.03335	2.2959E-05	688.4238837025586	61.079	1.2394	61.079	60.749	61.988	0					34	23	3	0	0	0	0.36627	1	23846	23846		0.35063	0	1	9995000			17890	4419	10969	11026	17181	17181					0.1622956071939825
KVITKFRKPS	10	Unmodified	_KVITKFRKPS_					0	0	0			REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	401.92425537109375	3	401.923919	1202.74993	0.17664	7.0995E-05	0.27178	0.00010923	0.44841	0.00018023	401.9240577801753	40.959	0.36512	40.658	40.527	40.893	-0.30185					8	6	2	0	0	0	0.83158	1	15254	15254		8.4443	4.8572	1	3951200	+		17891	17993	10970	11027	17182	17182					0.1566623497344608
KVITKFRKPS	10	Unmodified	_KVITKFRKPS_					0	0	0			REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-MATCH	HCT116MG_D190212_S1	1		3	401.923919	1202.74993	-0.3726	-0.00014976	0.69935	0.00028108	0.32675	0.00013133	402.25862877239973	40.784	0.20565	40.784	40.64	40.846	0	0.08739	0.0006714	NaN	8.4443	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10457000	+		17892	17993	10970	11027							0.1566623497344608
KVITKFRKPS	10	Unmodified	_KVITKFRKPS_					0	0	0			REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-MATCH	HCT116MG_D190212_S2	2		3	401.923919	1202.74993	0.12454	5.0057E-05	-0.069795	-2.8052E-05	0.054748	2.2005E-05	401.92383564940195	40.718	0.20557	40.648	40.519	40.725	-0.069626	-0.048556	-0.00025601	NaN	8.4443	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21655000	+		17893	17993	10970	11027							0.1566623497344608
KVITKFRKPS	10	Unmodified	_KVITKFRKPS_					0	0	0			REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	REV__tr|U7T5Z6|U7T5Z6_FUSNUtRNA5-hydroxyuridinemethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmRPE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	401.923919	1202.74993	0.17664	7.0995E-05	0.27178	0.00010923	0.44841	0.00018023	401.9240577801753	40.959	0.36512	40.658	40.527	40.893	-0.30185	-0.038833	0.00015584	NaN	8.4443	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3951200	+		17894	17993	10970	11027							0.1566623497344608
KVKEELAY	8	Unmodified	_KVKEELAY_					0	0	0			REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-SECPEP	HCT116MG_D190212_S2	2	490.285888671875	2	490.276575	978.538597	0.058097	2.8484E-05	0.032202	1.5788E-05	0.090299	4.4272E-05	490.27645358748845	37.61	0.56272	37.507	37.335	37.898	-0.10318					20	10	3	0	0	0	0.32538	1	14213	14213		5.2307	2.9279	1	156110000	+		17895	14268	10971	11028	17183	17183					0.04846938211710494
KVKHVRKISHH	11	Unmodified	_KVKHVRKISHH_					0	0	0			REV__nc|ENSG00000290796|A4QPB2-2|LRP5L	REV__nc|ENSG00000290796|A4QPB2-2|LRP5L	MSMS	HCT116MG_D190212_S1	1	456.9488830566406	3	456.94935	1367.82622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.632	1	12.632	12.132	13.132	0								0	0	0	0.9619	1	4065	4065		0.094841	0	1		+		17896	17331	10972	11029	17184	17184					0.15702051593461874
KVKKIYLDEKR	11	Unmodified	_KVKKIYLDEKR_					0	0	0		nc|ENSG00000152583|Q14515-2|SPARCL1;ENSG00000152583|ENST00000282470|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	HCT116MG_D190212_S1	1	710.9393920898438	2	710.437744	1418.86093	0.67168	0.00047719	-0.79509	-0.00056486	-0.12341	-8.7675E-05	710.4370027911278	60.927	1.705	60.927	60.491	62.196	0					51	32	2	0	0	0	0.74191	2	23637	23637;23893		0.35063	0	1	15386000			17897	4158	10973	11030	17185;17186	17185					0.16825829890854038
KVKKKKTSV	9	Unmodified	_KVKKKKTSV_					0	0	0		ENST00000460832.1_1_3:113218243-113233639:-|nuORF;SPICE1|p.D698Gfs*14|1|0.12|ENSG00000163611|chr3:113453515-113453516|-/C|frameshift_variant;ENSG00000163611|ENST00000295872|SPICE1	ENST00000460832.1_1_3:113218243-113233639:-|nuORF	ENST00000460832.1_1_3:113218243-113233639:-|nuORF	MSMS	HCT116MG_D190212_S3	3	523.3589477539062	2	523.358234	1044.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.678	1	58.411	57.911	58.911	-0.26663								0	0	0	0.7701	1	22327	22327		0.52476	0	1				17898	4613	10974	11031	17187	17187					0.18135161053396587
KVKLFQTWWRP	11	Unmodified	_KVKLFQTWWRP_					0	0	0		ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENST00000492191.5_1_3:184017042-184018322:+|nuORF	MSMS	HCT116MG_D190212_S3	3	496.9539794921875	3	496.95399	1487.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.632	1	51.321	50.821	51.821	-0.31166								0	0	0	0.96121	1	19499	19499		0.45452	0	1				17899	8349	10975	11032	17188	17188					0.11573284301857711
KVKNMKQMS	9	Unmodified	_KVKNMKQMS_					0	0	0		ENST00000557950.5_1_15:59209171-59224590:-|nuORF	ENST00000557950.5_1_15:59209171-59224590:-|nuORF	ENST00000557950.5_1_15:59209171-59224590:-|nuORF	MSMS	HCT116MG_D190212_S3	3	365.1998596191406	3	365.200067	1092.57837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.557	1	62.334	61.834	62.834	-0.22315								0	0	0	0.76995	1	23898	23898		1.0715	0.10919	1				17900	8799	10976	11033	17189	17189					0.035784186191222034
KVKRLKVKR	9	Unmodified	_KVKRLKVKR_					0	0	0		RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant;ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	577.9148559570312	2	577.914042	1153.81353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.659	1	13.734	13.234	14.234	0.074899								0	0	0	0.77025	1	4346	4346		0	0	1				17901	5707	10977	11034	17190	17190					0.24277640201216855
KVKRQHRRSYC	11	Unmodified	_KVKRQHRRSYC_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|64|3|sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|64|3|sense	MSMS	HCT116MG_D190212_S3	3	730.526123046875	2	730.904411	1459.79427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.606	1	49.29	48.79	49.79	-0.31596								0	0	0	0.95636	1	18684	18684		2.9952	0.49676	1		+		17902	16962	10978	11035	17191	17191					0.08276315848024751
KVLDFEHFL	9	Unmodified	_KVLDFEHFL_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;MYL6|p.M73V|1|0.08|ENSG00000092841|chr12:56160016-56160016|A/G|missense_variant	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	574.3111572265625	2	574.310949	1146.60735	0.49374	0.00028356	0.046279	2.6579E-05	0.54002	0.00031014	574.3109049774737	54.561	0.20309	54.561	54.434	54.637	0					9	3	3	0	0	0	5.2262E-08	1	20931	20931		223.06	145.08	1	356670000			17903	1587	10979	11036	17192	17192					0.03990602511407815
KVLDFEHFL	9	Unmodified	_KVLDFEHFL_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;MYL6|p.M73V|1|0.08|ENSG00000092841|chr12:56160016-56160016|A/G|missense_variant	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	574.31103515625	2	574.310949	1146.60735	0.35816	0.0002057	-0.22673	-0.00013021	0.13143	7.5482E-05	574.3107651096757	54.722	0.2556	54.533	54.354	54.61	-0.1894					9	4	3	0	0	0	0.061422	1	21097	21097		69.105	36.799	1	233980000			17904	1587	10979	11036	17193	17193					0.03990602511407815
KVLDYPAIVIY	11	Unmodified	_KVLDYPAIVIY_					0	0	0		nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH	nc|ENSG00000136250|P28039-2|AOAH	nc|ENSG00000136250|P28039-2|AOAH	MSMS	HCT116MG_D190212_S3	3	647.37646484375	2	647.376289	1292.73803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.898	1	44.588	44.088	45.088	-0.30927								0	0	0	0.93552	1	16795	16795		13.906	0.86358	1				17905	3405	10980	11037	17194	17194					0.10336573439599306
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	514.3167114257812	2	514.316566	1026.61858	0.41713	0.00021454	-0.22336	-0.00011488	0.19377	9.9658E-05	514.3163650232174	26.186	0.20729	25.824	25.713	25.921	-0.36164					6	3	2	0	0	0	0.19011	1	9483	9483		42.312	12.472	1	14753000			17906	1739	10981	11038	17195	17195					0.10633424605566688
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	514.316566	1026.61858	0.40419	0.00020788	-0.1734	-8.9185E-05	0.23079	0.0001187	514.3163219196496	25.727	0.15689	25.727	25.614	25.77	0	-0.0056128	3.5436E-05	NaN	42.312	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5948800			17907	1739	10981	11038							0.10633424605566688
KVLGKIEKV	9	Unmodified	_KVLGKIEKV_					0	0	0		LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	507.3395080566406	2	507.33951	1012.66447	0.51469	0.00026112	0.24237	0.00012296	0.75706	0.00038409	507.33954498501964	24.489	0.20848	24.108	23.979	24.187	-0.38003					6	3	2	0	0	0	0.053079	1	8790	8790		73.196	23.642	1	17196000			17908	6244	10982	11039	17196	17196					0.15864069787789958
KVLKAAGV	8	Unmodified	_KVLKAAGV_					0	0	0		nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;FGFR2|p.G338Ifs*18|1|0.49|ENSG00000066468|chr10:121517385-121517391|ATTCCCC/-|frameshift_variant;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2	nc|ENSG00000066468|P21802-6|FGFR2	nc|ENSG00000066468|P21802-6|FGFR2	MSMS	HCT116MG_D190212_S1	1	393.2643737792969	2	393.265813	784.517074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.292	1	52.292	51.792	52.792	0								0	0	0	0.8837	1	19997	19997		2.8892	0	1				17909	1173	10983	11040	17197	17197					0.11619597973651707
KVLKLKTKLVI	11	Unmodified	_KVLKLKTKLVI_					0	0	0		tr|U7STZ5|U7STZ5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01620PE=4SV=1	tr|U7STZ5|U7STZ5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01620PE=4SV=1	tr|U7STZ5|U7STZ5_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01620PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	641.9640502929688	2	641.962866	1281.91118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.923	1	45.612	45.112	46.112	-0.31094								0	0	0	0.96208	1	17208	17208		0	0	1				17910	18461	10984	11041	17198	17198					0.2814998428668787
KVLKVKDKL	9	Unmodified	_KVLKVKDKL_					0	0	0			REV__ENST00000502917.1_1_4:4269618-4270421:-|nuORF	REV__ENST00000502917.1_1_4:4269618-4270421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	535.86865234375	2	535.868434	1069.72232	0.38883	0.00020836	0.13549	7.2605E-05	0.52432	0.00028097	535.8684436571541	16.03	0.15636	16.03	15.952	16.109	0					4	2	2	0	0	0	0.64772	1	5391	5391		12.241	2.6967	1	5730200	+		17911	12445	10985	11042	17199	17199					0.1902433171321718
KVLRPRAA	8	Unmodified	_KVLRPRAA_					0	0	0		ENST00000595692.1_1_19:7679981-7682940:+|nuORF;ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	ENST00000595692.1_1_19:7679981-7682940:+|nuORF	ENST00000595692.1_1_19:7679981-7682940:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	455.8005065917969	2	455.800886	909.587219	0.0036618	1.6691E-06	0.40841	0.00018615	0.41207	0.00018782	455.80092344033784	61.018	1.0327	61.018	60.799	61.832	0					35	19	3	0	0	0	0.86564	1	23525	23525		2.5775	0	1	40952000			17912	1340	10986	11043	17200	17200					0.128808963621168
KVLSKEFHL	9	Unmodified	_KVLSKEFHL_					0	0	0		ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;nc|ENSG00000119335|Q01105|SET	ENSG00000119335|ENST00000322030|SET	ENSG00000119335|ENST00000322030|SET	MULTI-SECPEP	HCT116MG_D190212_S1	1	551.30517578125	2	550.826766	1099.63898	0.5491	0.00030246	0.049138	2.7066E-05	0.59824	0.00032953	551.3280752071056	34.363	0.2085	34.363	34.233	34.441	0					5	3	2	0	0	0	0.20889	1	12720	12720		24.021	2.4836	1	3745400			17913	2635	10987	11044	17201	17201					0.09314595265368553
KVLSKEFHL	9	Unmodified	_KVLSKEFHL_					0	0	0		ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;nc|ENSG00000119335|Q01105|SET	ENSG00000119335|ENST00000322030|SET	ENSG00000119335|ENST00000322030|SET	MSMS	HCT116MG_D190212_S2	2	367.5534973144531	3	367.553603	1099.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.613	1	34.455	33.955	34.955	-0.15834								0	0	0	0.62451	1	12884	12884		16.566	8.1216	1				17914	2635	10987	11044	17202	17202					0.09314595265368553
KVLSKEFHL	9	Unmodified	_KVLSKEFHL_					0	0	0		ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;nc|ENSG00000119335|Q01105|SET	ENSG00000119335|ENST00000322030|SET	ENSG00000119335|ENST00000322030|SET	MULTI-SECPEP	HCT116MG_D190212_S2	2	550.6033325195312	2	550.826766	1099.63898	0.65194	0.0003591	0.38797	0.0002137	1.0399	0.00057281	550.8267787799763	34.513	0.25758	34.338	34.227	34.485	-0.17512					7	4	2	0	0	0	0.14607	1	12824	12824		53.404	29.383	1	10613000			17915	2635	10987	11044	17203	17203					0.09314595265368553
KVLTQSRVP	9	Unmodified	_KVLTQSRVP_					0	0	0			REV__ENSG00000137338|ENST00000682144|PGBD1	REV__ENSG00000137338|ENST00000682144|PGBD1	MSMS	HCT116MG_D190212_S1	1	514.31640625	2	514.316566	1026.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.828	1	25.828	25.328	26.328	0								0	0	0	0.76655	1	9307	9307		13.042	1.4022	1		+		17916	12173	10988	11045	17204	17204					0.10633424605566688
KVLVKARRKLI	11	Unmodified	_KVLVKARRKLI_					0	0	0		ENST00000437151.1_1_6:87680204-87680483:+|nuORF	ENST00000437151.1_1_6:87680204-87680483:+|nuORF	ENST00000437151.1_1_6:87680204-87680483:+|nuORF	MSMS	HCT116MG_D190212_S2	2	662.4693603515625	2	662.469181	1322.92381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.008	1	52.819	52.319	53.319	-0.18922								0	0	0	0.96208	1	20376	20376		0	0	1				17917	7887	10989	11046	17205	17205					0.2752644046959176
KVLYLLLTSI	10	Unmodified	_KVLYLLLTSI_					0	0	0		nc|ENSG00000167447|Q8ND04-3|SMG8;ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-2|SMG8	nc|ENSG00000167447|Q8ND04-3|SMG8	nc|ENSG00000167447|Q8ND04-3|SMG8	MSMS	HCT116MG_D190212_S3	3	388.2539978027344	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.006	1	43.7	43.2	44.2	-0.30616								0	0	0	0.96836	1	16437	16437		0.62683	0	1				17918	4920	10990	11047	17206	17206					0.16289778790564924
KVLYRVVKVH	10	Unmodified	_KVLYRVVKVH_					0	0	0			REV__ENST00000514252.1_1_4:73978989-74017230:-|nuORF	REV__ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MSMS	HCT116MG_D190212_S3	3	413.8095703125	3	414.267797	1239.78156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.728	1	13.803	13.303	14.303	0.074899								0	0	0	0.96911	1	4373	4373		0.15932	0	1		+		17919	9941	10991	11048	17207	17207					0.1712622772740815
KVPEWVDTV	9	Unmodified	_KVPEWVDTV_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-SECPEP	HCT116MG_D190212_S2	2	537.2670288085938	2	536.787307	1071.56006	0.4652	0.00024972	-0.51615	-0.00027706	-0.05095	-2.7349E-05	536.7871281520414	45.818	0.25629	45.717	45.556	45.812	-0.1014					6	4	2	0	0	0	0.19936	1	17445	17445		34.402	9.0024	1	29000000			17920	2005	10992	11049	17208	17208					0.027143232404114315
KVPEWVDTV	9	Unmodified	_KVPEWVDTV_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MATCH	HCT116MG_D190212_S1	1		2	536.787307	1071.56006	0.52116	0.00027975	-0.11435	-6.1383E-05	0.4068	0.00021837	536.7870524694728	45.792	0.2103	45.792	45.66	45.87	0	0.037443	0.00023287	NaN	51.63	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7730400			17921	2005	10992	11049							0.027143232404114315
KVPGTHGG	8	Unmodified	_KVPGTHGG_					0	0	0			REV__ENSG00000136918|ENST00000373574|WDR38	REV__ENSG00000136918|ENST00000373574|WDR38	MULTI-MSMS	HCT116MG_D190212_S3	3	752.4050903320312	1	752.404963	751.397687	0.49801	0.0003747	0.41002	0.0003085	0.90803	0.00068321	752.4050701608818	22.119	0.31232	22.12	21.938	22.25	0.00074577					8	5	2	0	0	0	0.8506	1	7749	7749		5.2307	2.3415	1	7764500	+		17922	12150	10993	11050	17209	17209					0.012044043489595424
KVPIVKARIKK	11	Unmodified	_KVPIVKARIKK_					0	0	0			REV__STOX2|p.F266Ifs*11|3|0.43|ENSG00000173320|chr4:184009626-184009627|-/A|frameshift_variant	REV__STOX2|p.F266Ifs*11|3|0.43|ENSG00000173320|chr4:184009626-184009627|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	427.3027038574219	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.244	1	16.244	15.744	16.744	0								0	0	0	0.95705	1	5453	5453		2.6312	1.4164	1		+		17923	17600	10994	11051	17210	17210					0.2580734920395571
KVPIVKARIKK	11	Unmodified	_KVPIVKARIKK_					0	0	0			REV__STOX2|p.F266Ifs*11|3|0.43|ENSG00000173320|chr4:184009626-184009627|-/A|frameshift_variant	REV__STOX2|p.F266Ifs*11|3|0.43|ENSG00000173320|chr4:184009626-184009627|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	427.3027038574219	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.99	1	51.99	51.49	52.49	0								0	0	0	0.9619	1	19875	19875		0.094841	0	1		+		17924	17600	10994	11051	17211	17211					0.2580734920395571
KVPQLEIVPN	10	Unmodified	_KVPQLEIVPN_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S1	1	568.8372192382812	2	568.837331	1135.66011	0.24563	0.00013972	-0.010433	-5.9345E-06	0.2352	0.00013379	568.8372231085074	42.954	0.31284	42.954	42.743	43.056	0					11	5	3	0	0	0	0.13161	2	16229	16178;16229		67.838	24.066	1	24349000		+	17925	548	10995	11052	17212;17213	17213					0.09770560574224874
KVRALDLKTL	10	Unmodified	_KVRALDLKTL_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;TBC1D2B|p.L914Yfs*19|1|0.31|ENSG00000167202|chr15:77998312-77998312|G/-|frameshift_variant;ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MSMS	HCT116MG_D190212_S4	4	386.2535705566406	3	386.251924	1155.73394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.695	1	58.412	57.912	58.912	-0.28305								0	0	0	0.96804	1	22068	22068		0.69767	0.46182	1				17926	4910	10996	11053	17214	17214					0.1623052873655979
KVRLKIIIILK	11	Unmodified	_KVRLKIIIILK_					0	0	0		ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	MSMS	HCT116MG_D190212_S4	4	668.9930419921875	2	668.991958	1335.96936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.402	1	38.02	37.52	38.52	-0.38176								0	0	0	0.96208	1	14073	14073		0	0	1				17927	8125	10997	11054	17215	17215					0.31481665931983116
KVRRIKSEKLH	11	Unmodified	_KVRRIKSEKLH_					0	0	0		ENSG00000171729|ENST00000376008|TMEM51	ENSG00000171729|ENST00000376008|TMEM51	ENSG00000171729|ENST00000376008|TMEM51	MSMS	HCT116MG_D190212_S1	1	697.4398193359375	2	697.441152	1392.86775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.529	1	62.529	62.029	63.029	0								0	0	0	0.96141	1	24147	24147		0.35063	0	1				17928	5208	10998	11055	17216	17216					0.18703187562118728
KVSISAQA	8	Unmodified	_KVSISAQA_					0	0	0			REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	REV__tr|U7T5P2|U7T5P2_FUSNUMacrolide-specificeffluxproteinMacAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00034PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	402.2332458496094	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.944	1	28.944	28.444	29.444	0								0	0	0	0.8837	1	10560	10560		5.2307	0	1		+		17929	17987	10999	11056	17217	17217					0.04573826834655392
KVSRVVRK	8	Unmodified	_KVSRVVRK_					0	0	0		ENST00000438378.2_1_2:132278034-132278601:+|nuORF	ENST00000438378.2_1_2:132278034-132278601:+|nuORF	ENST00000438378.2_1_2:132278034-132278601:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	486.3277587890625	2	486.327268	970.639983	0.16294	7.9243E-05	0.34621	0.00016837	0.50915	0.00024761	486.3274104406718	60.896	1.6022	60.896	60.698	62.3	0					47	30	2	0	0	0	0.86564	1	23485	23485		2.5775	0	1	60283000			17930	7898	11000	11057	17218	17218					0.15348854424939873
KVTKPRQRRLR	11	Unmodified	_KVTKPRQRRLR_					0	0	0		ENST00000263119.9_1_22:24432555-24437617:+|nuORF	ENST00000263119.9_1_22:24432555-24437617:+|nuORF	ENST00000263119.9_1_22:24432555-24437617:+|nuORF	MSMS	HCT116MG_D190212_S2	2	719.466552734375	2	719.465493	1436.91643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.766	1	61.624	61.124	62.124	-0.14227								0	0	0	0.96141	1	23929	23929		0.35063	0.35063	1				17931	6875	11001	11058	17219	17219					0.21545100921866833
KVTRIKAR	8	Unmodified	_KVTRIKAR_					0	0	0			REV__AVPR1A|p.F351Lfs*19|4|0.28|ENSG00000166148|chr12:63147563-63147563|A/-|frameshift_variant	REV__AVPR1A|p.F351Lfs*19|4|0.28|ENSG00000166148|chr12:63147563-63147563|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	486.3275146484375	2	486.327268	970.639983	0.16294	7.9243E-05	0.34621	0.00016837	0.50915	0.00024761	486.3274104406718	60.896	1.6022	60.896	60.698	62.3	0					47	30	2	0	0	0	0.86564	1	23736	23736		2.5775	2.5775	1	60283000	+		17932	10021	11002	11059	17220	17220					0.15348854424939873
KVTVRRFRK	9	Unmodified	_KVTVRRFRK_					0	0	0		BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant;BCOR|p.L1646Sfs*28|1|0.06|ENSG00000183337|chrX:40053926-40053926|G/-|frameshift_variant;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	BCOR|p.P1621Qfs*53|2|0.52|ENSG00000183337|chrX:40054000-40054000|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	595.3848266601562	2	595.385648	1188.75674	0.49197	0.00029291	-1.9736	-0.001175	-1.4816	-0.00088213	595.3841661291968	61.414	0.93219	61.414	61.004	61.936	0					22	17	2	0	0	0	0.74607	1	23850	23850		2.0598	1.3694	1	4840600			17933	259	11003	11060	17221	17221					0.1699159264469472
KVVGKAVG	8	Unmodified	_KVVGKAVG_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R	REV__ENSG00000140443|ENST00000650285|IGF1R	MSMS	HCT116MG_D190212_S2	2	379.2486267089844	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.115	1	61.98	61.48	62.48	-0.13585								0	0	0	0.8837	1	24070	24070		0.69038	0.69038	1		+		17934	12294	11004	11061	17222	17222					0.09779024939564351
KVVKMFVGRVL	11	Unmodified	_KVVKMFVGRVL_					0	0	0			REV__nc|ENSG00000148655|Q9H2I8|LRMDA	REV__nc|ENSG00000148655|Q9H2I8|LRMDA	MSMS	HCT116MG_D190212_S1	1	638.4012451171875	2	638.402118	1274.78968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.853	1	60.853	60.353	61.353	0								0	0	0	0.95954	1	23467	23467		1.3295	0	1		+		17935	12551	11005	11062	17223	17223					0.16328038652522991
KVWAQRYLRWI	11	Unmodified	_KVWAQRYLRWI_					0	0	0		nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	MSMS	HCT116MG_D190212_S2	2	759.9405517578125	2	759.938245	1517.86194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.507	1	59.347	58.847	59.847	-0.16012								0	0	0	0.96141	1	23011	23011		0.35063	0.043601	1				17936	4089	11006	11063	17224	17224					0.12372089050450086
KVWDIVGTEL	10	Unmodified	_KVWDIVGTEL_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	HCT116MG_D190212_S1	1	580.3209838867188	2	580.321514	1158.62847	0.61605	0.00035751	-0.75381	-0.00043745	-0.13776	-7.9944E-05	580.3209444563478	54.065	0.15292	54.065	53.975	54.128	0					4	2	2	0	0	0	0.24695	1	20745	20745		55.235	17.059	1	23460000			17937	3150	11007	11064	17225	17225					0.055505678202735
KVWDIVGTEL	10	Unmodified	_KVWDIVGTEL_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MATCH	HCT116MG_D190212_S2	2		2	580.321514	1158.62847	0.44731	0.00025958	1.128	0.00065463	1.5754	0.00091421	580.3225262077597	54.314	0.15355	54.125	54.048	54.201	-0.1894	0.029924	0.0015695	NaN	55.235	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11394000			17938	3150	11007	11064							0.055505678202735
KVYILSLIM	9	Unmodified	_KVYILSLIM_					0	0	0			REV__NDN|p.R203H|1|0.44|ENSG00000182636|chr15:23686610-23686610|C/T|missense_variant	REV__NDN|p.R203H|1|0.44|ENSG00000182636|chr15:23686610-23686610|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	541.4105224609375	2	540.330296	1078.64604	0.50631	0.00027358	0.054123	2.9244E-05	0.56043	0.00030282	540.3302347204735	47.401	2.1232	47.401	46.285	48.408	0					163	41	5	0	0	0	0.74917	1	17854	17854		1.8442	1.8442	1	769890000	+		17939	13723	11008	11065	17226	17226					0.10986191821598368
KVYLKRLR	8	Unmodified	_KVYLKRLR_					0	0	0		ENST00000376621.7_1_6:30512405-30512693:-|nuORF	ENST00000376621.7_1_6:30512405-30512693:-|nuORF	ENST00000376621.7_1_6:30512405-30512693:-|nuORF	MSMS	HCT116MG_D190212_S2	2	359.24017333984375	3	359.241471	1074.70258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.927	1	36.813	36.313	37.313	-0.11478								0	0	0	0.8837	1	13825	13825		6.2058	0.9089	1				17940	7517	11009	11066	17227	17227					0.16822000493129963
KWAKRKRKNK	10	Unmodified	_KWAKRKRKNK_					0	0	0		ENST00000552092.1_1_12:117317134-117317281:-|nuORF	ENST00000552092.1_1_12:117317134-117317281:-|nuORF	ENST00000552092.1_1_12:117317134-117317281:-|nuORF	MSMS	HCT116MG_D190212_S3	3	672.3250732421875	2	671.930754	1341.84696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.127	1	55.839	55.339	56.339	-0.28773								0	0	0	0.96263	1	21301	21301		1.6526	0.32309	1				17941	8762	11010	11067	17228	17228					0.18970641973123747
KWHRAFPRKKR	11	Unmodified	_KWHRAFPRKKR_					0	0	0		nc|ENSG00000186376|P51815-2|ZNF75D;ENSG00000186376|ENST00000370766|ZNF75D	nc|ENSG00000186376|P51815-2|ZNF75D	nc|ENSG00000186376|P51815-2|ZNF75D	MSMS	HCT116MG_D190212_S1	1	755.4517211914062	2	755.454928	1508.8953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.769	1	14.769	14.269	15.269	0								0	0	0	0.96149	1	4859	4859		0.30703	0.30703	1				17942	5880	11011	11068	17229	17229					0.16121135612979742
KWIKLLLLII	10	Unmodified	_KWIKLLLLII_					0	0	0			REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	MSMS	HCT116MG_D190212_S1	1	418.29730224609375	3	418.296694	1251.86825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.419	1	56.419	55.919	56.919	0								0	0	0	0.97116	1	21689	21689		0	0	1		+		17943	11255	11012	11069	17230	17230					0.2523921422928197
KWIRTRKLKY	10	Unmodified	_KWIRTRKLKY_					0	0	0		ENSG00000100749|ENST00000216639|VRK1;ENST00000555351.1_1_14:97263783-97319303:+|nuORF	ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	MSMS	HCT116MG_D190212_S2	2	696.438232421875	2	696.435338	1390.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.443	1	62.307	61.807	62.807	-0.13585								0	0	0	0.96937	1	24203	24203		0.40072	0.050084	1				17944	1730	11013	11070	17231	17231					0.1763299053877745
KWKEAMFSAGM	11	Unmodified	_KWKEAMFSAGM_					0	0	0		RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	RTF1|p.D528Ifs*12|1|0.29|ENSG00000137815|chr15:41477182-41477182|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	643.3048095703125	2	643.307026	1284.5995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.224	1	21.224	20.724	21.724	0								0	0	0	0.95113	1	7456	7456		5.7319	0.43497	1				17945	3504	11014	11071	17232	17232					-0.03141616072025499
KWKRPKKPVQP	11	Unmodified	_KWKRPKKPVQP_					0	0	0			REV__WDR46|p.E81K|1|0.31|ENSG00000227057|chr6:33288842-33288842|C/T|missense_variant	REV__WDR46|p.E81K|1|0.31|ENSG00000227057|chr6:33288842-33288842|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	696.4395751953125	2	696.435338	1390.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.666	1	51.482	50.982	51.982	-0.18369								0	0	0	0.95196	1	19829	19829		5.2969	3.2109	1		+		17946	18053	11015	11072	17233	17233					0.1763299053877745
KWKWWEEERYP	11	Unmodified	_KWKWWEEERYP_					0	0	0		TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant;ENSG00000198900|ENST00000361337|TOP1	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	818.8983154296875	2	818.898983	1635.78341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.703	1	28.362	27.862	28.862	-0.34059								0	0	0	0.9598	1	10333	10333		1.1933	0.88631	1				17947	6294	11016	11073	17234	17234					-0.009048080453112561
KWLAGLLKHS	10	Unmodified	_KWLAGLLKHS_					0	0	0		ENSG00000146166|ENST00000370657|LGSN	ENSG00000146166|ENST00000370657|LGSN	ENSG00000146166|ENST00000370657|LGSN	MSMS	HCT116MG_D190212_S3	3	576.6749877929688	2	576.848033	1151.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.878	1	49.562	49.062	50.062	-0.31525								0	0	0	0.95507	1	18794	18794		3.5965	0	1				17948	3940	11017	11074	17235	17235					0.11173990393604072
KWLKRQRGKPR	11	Unmodified	_KWLKRQRGKPR_					0	0	0			REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	MSMS	HCT116MG_D190212_S4	4	484.9419250488281	3	484.972266	1451.89497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.734	1	54.41	53.91	54.91	-0.32349								0	0	0	0.96121	1	20474	20474		0.45452	0.31463	1		+		17949	11343	11018	11075	17236	17236					0.18709715893123757
KWLRPARRL	9	Unmodified	_KWLRPARRL_					0	0	0			REV__ENSG00000232070|ENST00000556585|TMEM253	REV__ENSG00000232070|ENST00000556585|TMEM253	MSMS	HCT116MG_D190212_S2	2	598.3804321289062	2	598.380366	1194.74618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.302	1	62.166	61.666	62.666	-0.13585								0	0	0	0.76973	1	24146	24146		1.8442	0.19162	1		+		17950	14324	11019	11076	17237	17237					0.15659609990257195
KWLRWHRV	8	Unmodified	_KWLRWHRV_					0	0	0			REV__AWAT2|p.D232Efs*45|1|0.07|ENSG00000147160|chrX:70042338-70042339|-/C|frameshift_variant	REV__AWAT2|p.D232Efs*45|1|0.07|ENSG00000147160|chrX:70042338-70042339|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	590.8445434570312	2	590.846159	1179.67777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.134	1	63.005	62.505	63.505	-0.12924								0	0	0	0.8837	1	24478	24478		0.69038	0	1		+		17951	10022	11020	11077	17238	17238					0.09511365410367034
KWLSKRSGP	9	Unmodified	_KWLSKRSGP_					0	0	0			REV__ENST00000554399.1_1_14:52907387-53019203:-|nuORF	REV__ENST00000554399.1_1_14:52907387-53019203:-|nuORF	MSMS	HCT116MG_D190212_S2	2	529.783447265625	2	529.808908	1057.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.182	1	28.866	28.366	29.366	-0.31613								0	0	0	0.56943	1	10678	10678		25.399	3.8623	1		+		17952	16446	11021	11078	17239	17239					0.07676557808372309
KWNRNWTT	8	Unmodified	_KWNRNWTT_					0	0	0			REV__tr|U7T239|U7T239_FUSNUPhosphatidicacidphosphatasetype2/haloperoxidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00835PE=4SV=1	REV__tr|U7T239|U7T239_FUSNUPhosphatidicacidphosphatasetype2/haloperoxidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00835PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	369.190185546875	3	369.189435	1104.54648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.764	1	46.393	45.893	46.893	-0.37134								0	0	0	0.8837	1	17275	17275		1.6526	0	1		+		17953	17914	11022	11079	17240	17240					-0.0016148974816587724
KWQTENSSP	9	Unmodified	_KWQTENSSP_					0	0	0			REV__FAM204A|p.V149Sfs*2|1|0.25|ENSG00000165669|chr10:118335122-118335123|-/T|frameshift_variant	REV__FAM204A|p.V149Sfs*2|1|0.25|ENSG00000165669|chr10:118335122-118335123|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	539.28125	2	538.753995	1075.49344	0.44135	0.00023778	-0.077174	-4.1578E-05	0.36417	0.0001962	538.7539515459017	23.617	0.72955	23.578	23.396	24.125	-0.03968					21	13	3	0	0	0	0.59184	1	8320	8320		11.64	0	1	20031000	+		17954	13070	11023	11080	17241	17241					-0.041289123214710344
KWRIYYKKRLR	11	Unmodified	_KWRIYYKKRLR_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MSMS	HCT116MG_D190212_S1	1	805.493408203125	2	805.493719	1608.97288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.377	1	44.377	43.877	44.877	0								0	0	0	0.96208	1	16788	16788		0	0	1				17955	873	11024	11081	17242	17242					0.1927572875849819
KWRRPRRCTR	10	Unmodified	_KWRRPRRCTR_					0	0	0		ENST00000456235.1_1_17:20979036-20979165:+|nuORF	ENST00000456235.1_1_17:20979036-20979165:+|nuORF	ENST00000456235.1_1_17:20979036-20979165:+|nuORF	MSMS	HCT116MG_D190212_S1	1	472.33013916015625	3	472.273951	1413.80002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.546	1	63.546	63.046	64.046	0								0	0	0	0.97045	1	24548	24548		0.15932	0.064481	1				17956	8025	11025	11082	17243	17243					0.10967459150333525
KWRRPRRCTR	10	Unmodified	_KWRRPRRCTR_					0	0	0		ENST00000456235.1_1_17:20979036-20979165:+|nuORF	ENST00000456235.1_1_17:20979036-20979165:+|nuORF	ENST00000456235.1_1_17:20979036-20979165:+|nuORF	MSMS	HCT116MG_D190212_S2	2	472.2754821777344	3	472.273951	1413.80002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.756	1	63.634	63.134	64.134	-0.12264								0	0	0	0.97045	1	24709	24709		0.15932	0	1				17957	8025	11025	11082	17244	17244					0.10967459150333525
KWTLRYDEW	9	Unmodified	_KWTLRYDEW_					0	0	0			REV__ENSG00000160716|ENST00000368476|CHRNB2	REV__ENSG00000160716|ENST00000368476|CHRNB2	MSMS	HCT116MG_D190212_S2	2	432.8852233886719	3	432.8839	1295.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5443	1	2.52	2.02	3.02	-0.024288								0	0	0	0.77018	1	814	814		0.26902	0.033176	1		+		17958	12841	11026	11083	17245	17245					-0.006117980909721155
KWTRWTRRKKR	11	Unmodified	_KWTRWTRRKKR_					0	0	0			REV__EWSR1|p.M605Hfs*40|1|0.09|ENSG00000182944|chr22:29299731-29299732|-/C|frameshift_variant	REV__EWSR1|p.M605Hfs*40|1|0.09|ENSG00000182944|chr22:29299731-29299732|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	801.4842529296875	2	801.484217	1600.95388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.149	1	61.149	60.649	61.649	0								0	0	0	0.96208	1	23588	23588		0	0	1		+		17959	16800	11027	11084	17246	17246					0.17744192187433327
KYADYANYNY	10	Unmodified	_KYADYANYNY_					0	0	0		SLC41A2|p.D110A|1|0.12|ENSG00000136052|chr12:104928199-104928199|T/G|missense_variant	SLC41A2|p.D110A|1|0.12|ENSG00000136052|chr12:104928199-104928199|T/G|missense_variant	SLC41A2|p.D110A|1|0.12|ENSG00000136052|chr12:104928199-104928199|T/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	642.800048828125	2	642.78021	1283.54587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.506	1	51.194	50.694	51.694	-0.31166								0	0	0	0.92272	1	19449	19449		10.824	1.4408	1				17960	18164	11028	11085	17247	17247					-0.0845637397851533
KYEDDDEEVPD	11	Unmodified	_KYEDDDEEVPD_					0	0	0			REV__nc|ENSG00000114423|Q13191-3|CBLB	REV__nc|ENSG00000114423|Q13191-3|CBLB	MSMS	HCT116MG_D190212_S2	2	677.6334228515625	2	677.270069	1352.52559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.105	1	33.93	33.43	34.43	-0.17512								0	0	0	0.93717	1	12678	12678		13.042	0.80181	1		+		17961	11508	11029	11086	17248	17248					-0.13657634219680403
KYEDFVASL	9	Unmodified	_KYEDFVASL_					0	0	0			REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	MSMS	HCT116MG_D190212_S1	1	536.6848754882812	2	536.27149	1070.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.63	1	23.63	23.13	24.13	0								0	0	0	0.76849	1	8424	8424		6.2058	1.4498	1		+		17962	15872	11030	11087	17249	17249					-0.004016695135305781
KYEDLYAFSYN	11	Unmodified	_KYEDLYAFSYN_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-MSMS	HCT116MG_D190212_S3	3	706.8224487304688	2	706.822075	1411.6296	0.8394	0.00059331	-0.027714	-1.9589E-05	0.81169	0.00057372	706.8220360362404	56.407	0.31458	56.124	55.993	56.307	-0.28367					17	5	5	0	0	0	0.6626	1	21426	21426		28.495	3.5035	1	31721000			17963	3630	11031	11088	17250	17250					-0.059752626014642374
KYEDLYAFSYN	11	Unmodified	_KYEDLYAFSYN_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-MSMS	HCT116MG_D190212_S4	4	706.822509765625	2	706.822075	1411.6296	0.91625	0.00064763	-0.1681	-0.00011882	0.74815	0.00052881	706.8218251563103	56.428	0.15778	56.122	56.042	56.2	-0.30626					8	2	4	0	0	0	0.70377	1	21178	21178		20.415	11.031	1	9453200			17964	3630	11031	11088	17251	17251					-0.059752626014642374
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S1	1	647.2752075195312	2	647.274761	1292.53497	0.69873	0.00045227	0.21653	0.00014015	0.91526	0.00059242	647.2748421627941	33.841	0.36522	33.841	33.659	34.024	0					16	6	4	0	0	0	3.0218E-08	1	12541	12541		277.2	237.25	1	94331000			17965	2820	11032	11089	17252	17252					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S1	1	431.8526916503906	3	431.852266	1292.53497	0.018804	8.1206E-06	-0.32949	-0.00014229	-0.31069	-0.00013417	431.8523605808956	33.866	0.57265	33.866	33.556	34.128	0					14	10	2	0	0	0	0.20521	1	12562	12562		40.725	31.973	1	17115000			17966	2820	11032	11089	17253	17253					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S2	2	647.2752685546875	2	647.274761	1292.53497	0.64995	0.0004207	0.015868	1.0271E-05	0.66582	0.00043097	647.2747193578933	33.936	0.4153	33.761	33.604	34.02	-0.17512					24	7	5	0	0	0	0.0019891	1	12600	12600		223.81	181.97	1	486080000			17967	2820	11032	11089	17254	17254					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S2	2	431.852294921875	3	431.852266	1292.53497	0.0079357	3.427E-06	0.0053867	2.3263E-06	0.013322	5.7533E-06	431.8522458776467	33.961	0.41523	33.786	33.552	33.967	-0.17512					14	7	3	0	0	0	0.20521	1	12644	12644		40.725	34.941	1	109480000			17968	2820	11032	11089	17255	17255					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S3	3	647.2755737304688	2	647.274761	1292.53497	0.63265	0.0004095	-0.072175	-4.6717E-05	0.56047	0.00036278	647.2747143877971	34.192	0.62369	33.897	33.715	34.339	-0.29419					37	11	6	0	0	0	3.0218E-08	1	12557	12557		277.2	237.25	1	483810000			17969	2820	11032	11089	17256	17256					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S3	3	431.8522644042969	3	431.852266	1292.53497	0.183	7.9028E-05	0.00018782	8.1112E-08	0.18318	7.9109E-05	431.8522020363374	34.192	0.46838	33.897	33.715	34.184	-0.29419					23	8	4	0	0	0	0.082877	1	12598	12598		61.602	55.818	1	70123000			17970	2820	11032	11089	17257	17257					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S4	4	647.2748413085938	2	647.274761	1292.53497	0.5161	0.00033406	0.10956	7.0916E-05	0.62567	0.00040498	647.2747689071922	34.291	0.46358	33.906	33.724	34.187	-0.38558					30	8	5	0	0	0	1.4455E-05	1	12495	12495		258.11	208.18	1	242930000			17971	2820	11032	11089	17258	17258					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S4	4	431.8523864746094	3	431.852266	1292.53497	0.2135	9.22E-05	-0.050665	-2.188E-05	0.16283	7.032E-05	431.85221400992117	34.291	0.36344	33.906	33.724	34.087	-0.38558					18	6	4	0	0	0	0.12465	1	12496	12496		53.317	45.03	1	39039000			17972	2820	11032	11089	17259	17259					-0.09959776352798144
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	MULTI-MSMS	HCT116MG_D190212_S1	1	616.3220825195312	2	616.321514	1230.62847	0.36197	0.00022309	0.22297	0.00013742	0.58494	0.00036051	616.3215794740116	42.711	0.25715	42.711	42.538	42.795	0					8	4	3	0	0	0	0.022505	1	16127	16127		93.938	44.384	1	10273000			17973	3998	11033	11090	17260	17260					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	MULTI-MSMS	HCT116MG_D190212_S2	2	616.3219604492188	2	616.321514	1230.62847	0.68861	0.0004244	0.32759	0.0002019	1.0162	0.00062631	616.3215684451882	42.629	0.20808	42.559	42.429	42.637	-0.069984					8	3	3	0	0	0	0.0034381	1	16143	16143		160.69	88.767	1	42933000			17974	3998	11033	11090	17261	17261					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	MULTI-MSMS	HCT116MG_D190212_S3	3	616.3228149414062	2	616.321514	1230.62847	0.46631	0.0002874	1.3036	0.00080343	1.7699	0.0010908	616.322161000835	42.942	0.25085	42.638	42.456	42.706	-0.30472					7	4	2	0	0	0	0.0064416	1	16027	16027		125.04	66.359	1	9326400			17975	3998	11033	11090	17262	17262					0.02238567820290882
KYHIFQMMMQ	10	Unmodified	_KYHIFQMMMQ_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MSMS	HCT116MG_D190212_S1	1	452.8808898925781	3	452.880228	1355.61885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1289	1	9.1289	8.6289	9.6289	0								0	0	0	0.97045	1	2763	2763		0.15932	0	1				17976	4815	11034	11091	17263	17263					-0.04472983052778545
KYKGLLRRL	9	Unmodified	_KYKGLLRRL_					0	0	0			REV__ENST00000535340.5_1_11:18591643-18610207:-|nuORF	REV__ENST00000535340.5_1_11:18591643-18610207:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	574.4168090820312	2	573.877125	1145.7397	0.42315	0.00024283	3.7198	0.0021347	4.143	0.0023776	574.379705021017	58.607	0.30749	58.438	58.297	58.605	-0.16906					8	5	2	0	0	0	0.27049	1	22716	22716		0.52476	0	1	13413000	+		17977	12595	11035	11092	17264	17264					0.17265672038888624
KYKLKRMRWRV	11	Unmodified	_KYKLKRMRWRV_					0	0	0			REV__TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	REV__TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	782.4751586914062	2	782.474472	1562.93439	0.68608	0.00053684	-0.077684	-6.0786E-05	0.6084	0.00047606	782.4743513958003	55.349	0.79145	55.057	54.508	55.3	-0.2918					25	14	2	0	0	0	0.74191	1	21016	21016		0	0	1	6799000	+		17978	12124	11036	11093	17265	17265					0.17544099852352701
KYKQKRRS	8	Unmodified	_KYKQKRRS_					0	0	0		nc|ENSG00000178773|Q9UBL6|CPNE7;ENSG00000178773|ENST00000319518|CPNE7;ENST00000532500.1_1_16:89651241-89653999:+|nuORF	nc|ENSG00000178773|Q9UBL6|CPNE7	nc|ENSG00000178773|Q9UBL6|CPNE7	MSMS	HCT116MG_D190212_S2	2	546.8544311523438	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.865	1	61.726	61.226	62.226	-0.1396								0	0	0	0.8837	1	23969	23969		2.3027	0	1				17979	5516	11037	11094	17266	17266					0.10899051448268438
KYLKMLKEEK	10	Unmodified	_KYLKMLKEEK_					0	0	0		ENSG00000104472|ENST00000220913|CHRAC1	ENSG00000104472|ENST00000220913|CHRAC1	ENSG00000104472|ENST00000220913|CHRAC1	MULTI-MSMS	HCT116MG_D190212_S1	1	437.2539978027344	3	437.256458	1308.74754	-0.16249	-7.1048E-05	0.90782	0.00039695	0.74533	0.0003259	437.2562421403384	50.418	0.67065	50.418	50.059	50.73	0					22	12	3	0	0	0	0.88076	1	19191	19191		3.3196	0.68841	1	22013000			17980	1936	11038	11095	17267	17267					0.10552018453472556
KYLLEERSL	9	Unmodified	_KYLLEERSL_					0	0	0			REV__nc|ENSG00000198022|A6NJ88|SAGE2P	REV__nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-SECPEP	HCT116MG_D190212_S2	2	383.8863830566406	3	384.220401	1149.63937	-0.059997	-2.3052E-05	1.6031	0.00061596	1.5431	0.00059291	384.22109211306275	27.957	0.3084	27.614	27.398	27.706	-0.34201					7	5	2	0	0	0	0.24849	1	10169	10169		18.373	6.1455	1	13881000	+		17981	17262	11039	11096	17268	17268					0.07053970194556314
KYMPHAVL	8	Unmodified	_KYMPHAVL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant;PRPF8|p.F128Lfs*23|1|0.37|ENSG00000174231|chr17:1682179-1682179|G/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S1	1	479.7627258300781	2	479.762581	957.510608	0.082066	3.9372E-05	0.46235	0.00022182	0.54442	0.00026119	479.7626945612022	31.919	0.31308	31.919	31.753	32.066	0					7	5	2	0	0	0	0.1757	1	11791	11791		78.445	11.409	1	3708600			17982	5321	11040	11097	17269	17269					0.03015336750638653
KYQIRIQKKRK	11	Unmodified	_KYQIRIQKKRK_					0	0	0			REV__ENSG00000205301|ENST00000511113|MGAT4D	REV__ENSG00000205301|ENST00000511113|MGAT4D	MSMS	HCT116MG_D190212_S1	1	496.9872741699219	3	496.987693	1487.94125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.514	1	12.514	12.014	13.014	0								0	0	0	0.96208	1	4020	4020		0	0	1		+		17983	14220	11041	11098	17270	17270					0.2167973600453479
KYRKITKEELK	11	Unmodified	_KYRKITKEELK_					0	0	0		tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	tr|U7STI8|U7STI8_FUSNUHomoserinekinasetypeIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01073PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	718.4359130859375	2	718.435201	1434.85585	0.67933	0.00048805	-0.30337	-0.00021795	0.37596	0.0002701	718.4347855525536	60.005	0.49274	60.005	59.56	60.052	0					34	19	2	0	0	0	0.74191	2	23027	23027;23102		0	0	1	809510			17984	18442	11042	11099	17271;17272	17271					0.15581526028245207
KYRLVVLVGPV	11	Unmodified	_KYRLVVLVGPV_					0	0	0		ENSG00000150054|ENST00000683449|MPP7;nc|ENSG00000150054|Q5T2T1-2|MPP7	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	MSMS	HCT116MG_D190212_S4	4	621.8986206054688	2	621.900266	1241.78598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.855	1	49.493	48.993	49.993	-0.36213								0	0	0	0.95925	1	18505	18505		1.4819	0.15237	1				17985	4079	11043	11100	17273	17273					0.1747569215033309
KYRRYRIWKR	10	Unmodified	_KYRRYRIWKR_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MSMS	HCT116MG_D190212_S1	1	762.708984375	2	762.954761	1523.89497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.125	1	40.125	39.625	40.625	0								0	0	0	0.9696	1	15072	15072		0.35063	0.043601	1		+		17986	14223	11044	11101	17274	17274					0.1539771589314114
KYRSFDRYRRR	11	Unmodified	_KYRSFDRYRRR_					0	0	0		ENST00000410030.1_1_17:73900359-73901082:-|nuORF;ENST00000464758.1_1_17:73900462-73900977:-|nuORF;ENST00000493383.5_1_17:73897833-73900929:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF;ENSG00000204316|ENST00000309352|MRPL38;ENST00000477736.5_1_17:73897061-73900795:-|nuORF	ENST00000410030.1_1_17:73900359-73901082:-|nuORF	ENST00000410030.1_1_17:73900359-73901082:-|nuORF	MSMS	HCT116MG_D190212_S1	1	534.9613037109375	3	534.962318	1601.86513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.71	1	12.71	12.21	13.21	0								0	0	0	0.9619	1	4094	4094		0.094841	0	1				17987	6326	11045	11102	17275	17275					0.08826732157149308
KYRVRHKFPL	10	Unmodified	_KYRVRHKFPL_					0	0	0		SIX2|p.R113H|1|0.33|ENSG00000170577|chr2:45008773-45008773|C/T|missense_variant	SIX2|p.R113H|1|0.33|ENSG00000170577|chr2:45008773-45008773|C/T|missense_variant	SIX2|p.R113H|1|0.33|ENSG00000170577|chr2:45008773-45008773|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	448.6089782714844	3	448.606813	1342.79861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.609	1	51.259	50.759	51.759	-0.35028								0	0	0	0.96836	1	19213	19213		0.62683	0.17231	1				17988	18151	11046	11103	17276	17276					0.1409214833322494
KYSRWHHNRR	10	Unmodified	_KYSRWHHNRR_					0	0	0			REV__SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant	REV__SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	720.37939453125	2	720.379417	1438.74428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.989	1	14.664	14.164	15.164	-0.32424								0	0	0	0.96453	1	4948	4948		1.4819	0	1		+		17989	12272	11047	11104	17277	17277					0.042459492343368765
KYYADLAGYAN	11	Unmodified	_KYYADLAGYAN_					0	0	0			REV__nc|ENSG00000239306|Q96PK6-5|RBM14	REV__nc|ENSG00000239306|Q96PK6-5|RBM14	MULTI-MSMS	HCT116MG_D190212_S3	3	625.2993774414062	2	624.798403	1247.58225	0.17201	0.00010747	-2.3277	-0.0014543	-2.1556	-0.0013468	624.7976375933521	17.783	0.57235	17.865	17.482	18.054	0.081358					16	10	2	0	0	0	0.72218	1	5978	5978		13.615	2.8154	1	1452800	+		17990	13464	11048	11105	17278	17278					-0.03163497081800415
LAAAGEAAA	9	Unmodified	_LAAAGEAAA_					0	0	0			REV__ENST00000607016.1_1_6:34360304-34360421:-|nuORF	REV__ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	744.3893432617188	1	744.388645	743.381368	0.81737	0.00060844	0.47323	0.00035227	1.2906	0.00096071	744.3888892760323	29.58	0.31204	29.231	29.033	29.345	-0.34921					9	5	2	0	0	0	0.065643	1	10687	10687		67.035	2.799	1	3502500	+		17991	16776	11049	11106	17279	17279					-0.0005872160782018909
LAAAKRRL	8	Unmodified	_LAAAKRRL_					0	0	0		ENST00000475066.1_1_7:154759501-154775093:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1	ENST00000475066.1_1_7:154759501-154775093:-|nuORF	ENST00000475066.1_1_7:154759501-154775093:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	449.8005676269531	2	449.800886	897.587219	-0.016418	-7.3847E-06	-0.28695	-0.00012907	-0.30337	-0.00013645	449.8007571218297	58.185	0.32809	58.185	58.085	58.413	0					9	6	2	0	0	0	0.87576	1	22431	22431		0.79363	0	1	81221000			17992	4322	11050	11107	17280	17280					0.13432896362121483
LAAANRQR	8	Unmodified	_LAAANRQR_					0	0	0			REV__ENSG00000251322|ENST00000262795|SHANK3	REV__ENSG00000251322|ENST00000262795|SHANK3	MULTI-MSMS	HCT116MG_D190212_S4	4	450.26239013671875	2	450.262125	898.509697	0.16397	7.3828E-05	-0.17201	-7.7449E-05	-0.0080427	-3.6213E-06	450.2618762951642	49.455	0.55578	49.093	48.714	49.269	-0.36213					13	10	2	0	0	0	0.86564	2	18312	18312;18396		2.5775	0.27475	1	8602300	+		17993	14382	11051	11108	17281;17282	17281					0.056382584259381474
LAAAPGFY	8	Unmodified	_LAAAPGFY_					0	0	0			REV__nc|ENSG00000073803|O43283-5|MAP3K13	REV__nc|ENSG00000073803|O43283-5|MAP3K13	MULTI-MSMS	HCT116MG_D190212_S2	2	405.2131652832031	2	405.213246	808.41194	-0.168	-6.8074E-05	-0.011109	-4.5016E-06	-0.17911	-7.2576E-05	405.2131691921359	42.266	0.25877	42.197	42.068	42.327	-0.068199					6	4	2	0	0	0	0.75115	1	16030	16030		17.087	5.9721	1	9759700	+		17994	10791	11052	11109	17283	17283					7.056777224079269E-05
LAAAPGPF	8	Unmodified	_LAAAPGPF_					0	0	0			REV__ENST00000469990.1_1_11:555480-556365:-|nuORF	REV__ENST00000469990.1_1_11:555480-556365:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	372.2077331542969	2	372.207964	742.401375	-0.055626	-2.0704E-05	-0.29044	-0.00010811	-0.34607	-0.00012881	372.2077985737664	33.775	0.75984	33.485	33.011	33.771	-0.29013					18	14	2	0	0	0	0.86388	1	12423	12423		2.8892	0	1	4286000	+		17995	15860	11053	11110	17284	17284					0.019870741227919098
LAAAPGPF	8	Unmodified	_LAAAPGPF_					0	0	0			REV__ENST00000469990.1_1_11:555480-556365:-|nuORF	REV__ENST00000469990.1_1_11:555480-556365:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	372.2073059082031	2	372.207964	742.401375	0.19601	7.2955E-05	-0.47727	-0.00017764	-0.28126	-0.00010469	372.20768039419397	33.87	0.77773	33.486	33.051	33.829	-0.38426					24	15	2	0	0	0	0.86388	1	12310	12310		2.8892	0	1	4002200	+		17996	15860	11053	11110	17285	17285					0.019870741227919098
LAAAVNRH	8	Unmodified	_LAAAVNRH_					0	0	0			REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF	REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	426.24609375	2	426.245944	850.477334	0.035795	1.5258E-05	0.48512	0.00020678	0.52091	0.00022204	426.24602875392384	45.377	0.46889	45.377	45.244	45.713	0					12	8	3	0	0	0	0.86564	1	17216	17216		2.5775	0.27475	1	21984000	+		17997	15624	11054	11111	17286	17286					0.0461147102294035
LAAAVNRH	8	Unmodified	_LAAAVNRH_					0	0	0			REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF	REV__ENST00000436411.5_1_7:107204485-107204728:+|nuORF	MSMS	HCT116MG_D190212_S1	1	426.245849609375	2	426.245944	850.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.29	1	51.29	50.79	51.79	0								0	0	0	0.8837	1	19592	19592		2.5775	0	1		+		17998	15624	11054	11111	17287	17287					0.0461147102294035
LAAKAAGV	8	Unmodified	_LAAKAAGV_					0	0	0		ENSG00000104714|ENST00000262109|ERICH1	ENSG00000104714|ENST00000262109|ERICH1	ENSG00000104714|ENST00000262109|ERICH1	MSMS	HCT116MG_D190212_S3	3	350.72100830078125	2	350.721239	699.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.982	1	31.704	31.204	32.204	-0.27771								0	0	0	0.8837	1	11705	11705		5.7604	0	1				17999	1945	11055	11112	17288	17288					0.0661876301413713
LAANNSAL	8	Unmodified	_LAANNSAL_					0	0	0		COLEC12|p.G581Rfs*17|1|0.2|ENSG00000158270|chr18:334817-334818|-/G|frameshift_variant;COLEC12|p.P608Rfs*38|1|0.22|ENSG00000158270|chr18:333137-333137|G/-|frameshift_variant;ENST00000582147.1_1_18:334691-500598:-|nuORF;COLEC12|p.K656Nfs*4|2|0.27|ENSG00000158270|chr18:331763-331763|T/-|frameshift_variant;ENSG00000158270|ENST00000400256|COLEC12	COLEC12|p.G581Rfs*17|1|0.2|ENSG00000158270|chr18:334817-334818|-/G|frameshift_variant	COLEC12|p.G581Rfs*17|1|0.2|ENSG00000158270|chr18:334817-334818|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	387.2124328613281	2	387.211235	772.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.542	1	36.156	35.656	36.656	-0.38551								0	0	0	0.8837	1	13376	13376		11.114	4.7604	1				18000	532	11056	11113	17289	17289					0.012609672835196761
LAAPLRAAA	9	Unmodified	_LAAPLRAAA_					0	0	0			REV__ENST00000599069.5_1_1:16939872-16940031:-|nuORF	REV__ENST00000599069.5_1_1:16939872-16940031:-|nuORF	MSMS	HCT116MG_D190212_S1	1	427.2662658691406	2	427.266345	852.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.841	1	31.841	31.341	32.341	0								0	0	0	0.46961	1	11729	11729		30.225	3.8835	1		+		18001	16739	11057	11114	17290	17290					0.0859781234254342
LAAPPRRLRS	10	Unmodified	_LAAPPRRLRS_					0	0	0		nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MSMS	HCT116MG_D190212_S1	1	568.85400390625	2	568.854181	1135.69381	0.45308	0.00025773	-0.93062	-0.00052939	-0.47755	-0.00027165	568.8534944444988	53.899	0.40807	53.899	53.72	54.128	0					22	7	5	0	0	0	0.87037	1	20656	20656		6.2058	0.47393	1	573420000			18002	3081	11058	11115	17291	17291					0.13139026856629243
LAASTRDGP	9	Unmodified	_LAASTRDGP_					0	0	0			REV__ENST00000553899.5_1_14:53174026-53175060:+|nuORF	REV__ENST00000553899.5_1_14:53174026-53175060:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	444.24395751953125	2	444.232699	886.450845	0.20835	9.2556E-05	0.36317	0.00016133	0.57152	0.00025389	444.2328584684301	22.114	0.20831	21.729	21.635	21.844	-0.38503					7	3	3	0	0	0	0.23716	1	7813	7813		8.5933	0	1	4734100	+		18003	16440	11059	11116	17292	17292					0.003077373409496431
LAATLLNFLVC	11	Unmodified	_LAATLLNFLVC_					0	0	0		ENSG00000185897|ENST00000327809|FFAR3	ENSG00000185897|ENST00000327809|FFAR3	ENSG00000185897|ENST00000327809|FFAR3	MSMS	HCT116MG_D190212_S2	2	589.338134765625	2	589.33611	1176.65767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.676	1	43.598	43.098	44.098	-0.078373								0	0	0	0.93552	1	16567	16567		13.906	0.86358	1				18004	5851	11060	11117	17293	17293					0.0764038884490219
LADDGYLRF	9	Unmodified	_LADDGYLRF_					0	0	0			REV__ENSG00000130227|ENST00000252512|XPO7	REV__ENSG00000130227|ENST00000252512|XPO7	MULTI-SECPEP	HCT116MG_D190212_S2	2	535.2769165039062	2	535.269281	1068.52401	0.50557	0.00027062	0.17416	9.3224E-05	0.67973	0.00036384	535.2695734915873	55.643	0.15546	55.457	55.327	55.483	-0.18565					4	2	2	0	0	0	0.19551	1	21401	21401		34.102	8.7031	1	25944000	+		18005	11908	11061	11118	17294	17294					-0.007511339364327796
LADFPILLF	9	Unmodified	_LADFPILLF_					0	0	0			REV__ENST00000381055.7_1_5:64777573-64777645:-|nuORF	REV__ENST00000381055.7_1_5:64777573-64777645:-|nuORF	MSMS	HCT116MG_D190212_S3	3	350.2072448730469	3	350.207433	1047.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.11	1	45.798	45.298	46.298	-0.31237								0	0	0	0.7676	1	17283	17283		5.7319	0	1		+		18006	15275	11062	11119	17295	17295					0.07857289630851483
LADGVKDMRET	11	Unmodified	_LADGVKDMRET_					0	0	0			REV__ENST00000460575.1_1_1:68151090-68151810:+|nuORF	REV__ENST00000460575.1_1_1:68151090-68151810:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	617.8096313476562	2	617.808445	1233.60234	0.60753	0.00037534	1.4021	0.00086621	2.0096	0.0012415	617.8094509478562	34.738	0.51681	34.58	34.296	34.813	-0.15834					10	9	2	0	0	0	0.33998	1	12949	12949		27.629	8.3718	1	22052000	+		18007	11591	11063	11120	17296	17296					-0.005120694135257509
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	HCT116MG_D190212_S2	2	872.472900390625	1	872.472374	871.465098	0.85127	0.00074271	0.38786	0.0003384	1.2391	0.0010811	872.472517349086	46.06	0.35891	45.958	45.761	46.12	-0.1014					11	6	2	0	0	0	0.12994	1	17553	17553		52.268	0	1	22695000	+		18008	12183	11064	11121	17297	17297					0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	HCT116MG_D190212_S2	2	872.39794921875	1	872.472374	871.465098	0.85127	0.00074271	0.38786	0.0003384	1.2391	0.0010811	872.472517349086	46.06	0.35891	45.958	45.761	46.12	-0.1014					11	6	2	0	0	0	0.10825	1	17572	17572		36.127	0	1	22695000	+		18009	12183	11064	11121	17298	17298					0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	872.472374	871.465098	0.84599	0.0007381	-0.43757	-0.00038177	0.40842	0.00035633	872.4721432450509	46.001	0.20886	46.001	45.818	46.027	0	0.021144	-0.00049584	NaN	52.268	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6462600	+		18010	12183	11064	11121							0.024223897692309038
LADQHAKFRSS	11	Unmodified	_LADQHAKFRSS_					0	0	0			REV__nc|ENSG00000095321|P43155-3|CRAT	REV__nc|ENSG00000095321|P43155-3|CRAT	MULTI-SECPEP	HCT116MG_D190212_S1	1	630.8605346679688	2	630.328193	1258.64183	0.47586	0.00029995	1.5372	0.00096895	2.0131	0.0012689	630.3289643049633	50.679	0.46429	50.679	50.368	50.833	0					13	8	2	0	0	0	0.36341	1	19339	19339		10.8	5.5026	1	11115000	+		18011	11024	11065	11122	17299	17299					0.022858186522398682
LAEELPTI	8	Unmodified	_LAEELPTI_					0	0	0			REV__nc|ENSG00000111785|Q9NVN3|RIC8B	REV__nc|ENSG00000111785|Q9NVN3|RIC8B	MSMS	HCT116MG_D190212_S3	3	443.2486267089844	2	443.250026	884.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.747	1	40.445	39.945	40.945	-0.30161								0	0	0	0.8837	1	15137	15137		13.508	0	1		+		18012	11438	11066	11123	17300	17300					0.03863560429056179
LAELETPMEA	10	Unmodified	_LAELETPMEA_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MSMS	HCT116MG_D190212_S1	1	552.2662353515625	2	552.26809	1102.52163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.44	1	30.44	29.94	30.94	0								0	0	0	0.90475	1	11164	11164		14.838	3.198	1				18013	4465	11067	11124	17301	17301					-0.02553350456400949
LAELMRRRVL	10	Unmodified	_LAELMRRRVL_					0	0	0			REV__ENSG00000235034|ENST00000425202|C19orf81	REV__ENSG00000235034|ENST00000425202|C19orf81	MULTI-MSMS	HCT116MG_D190212_S2	2	629.3865966796875	2	628.884624	1255.7547	0.50795	0.00031944	1.0708	0.00067339	1.5787	0.00099283	629.3868310796455	54.397	0.61343	54.207	54.048	54.661	-0.1894					17	11	2	0	0	0	0.75427	1	20933	20933		15.847	4.2069	1	66651000	+		18014	14330	11068	11125	17302	17302					0.13704795844569162
LAELMRRRVL	10	Unmodified	_LAELMRRRVL_					0	0	0			REV__ENSG00000235034|ENST00000425202|C19orf81	REV__ENSG00000235034|ENST00000425202|C19orf81	MULTI-MATCH	HCT116MG_D190212_S1	1		2	628.884624	1255.7547	0.79599	0.00050059	0.40726	0.00025612	1.2033	0.00075671	628.8839878713338	54.151	0.20536	54.151	54.026	54.231	0	-0.027983	-0.00078355	NaN	15.847	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9197100	+		18015	14330	11068	11125							0.13704795844569162
LAEPKNKAS	9	Unmodified	_LAEPKNKAS_					0	0	0		nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF;ENSG00000155636|ENST00000286070|RBM45;nc|ENSG00000155636|Q8IUH3|RBM45	nc|ENSG00000155636|Q8IUH3-2|RBM45	nc|ENSG00000155636|Q8IUH3-2|RBM45	MULTI-SECPEP	HCT116MG_D190212_S2	2	478.75823974609375	2	479.271824	956.529095	0.16325	7.8243E-05	-0.73988	-0.0003546	-0.57662	-0.00027636	479.27159235447476	42.293	0.25877	42.225	42.068	42.327	-0.068199					7	4	2	0	0	0	0.21474	1	15976	15976		29.082	3.6823	1	4364700			18016	4257	11069	11126	17303	17303					0.049091699261907706
LAEQLKRKTKK	11	Unmodified	_LAEQLKRKTKK_					0	0	0			REV__nc|ENSG00000126733|Q96NX9-3|DACH2	REV__nc|ENSG00000126733|Q96NX9-3|DACH2	MSMS	HCT116MG_D190212_S3	3	672.393798828125	2	671.930086	1341.84562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.483	1	44.175	43.675	44.675	-0.30759								0	0	0	0.95307	1	16630	16630		9.3831	5.7866	1		+		18017	11843	11070	11127	17304	17304					0.1883696309369043
LAERCLAA	8	Unmodified	_LAERCLAA_					0	0	0		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MSMS	HCT116MG_D190212_S1	1	423.72869873046875	2	423.728738	845.442923	-0.06537	-2.7699E-05	-0.28984	-0.00012281	-0.35521	-0.00015051	423.728772102896	31.923	0.26089	31.923	31.753	32.014	0					8	4	2	0	0	0	0.55794	1	11771	11771		36.044	1.8569	1	10608000			18018	3938	11071	11128	17305	17305					0.014018868198149903
LAEVWGAGVGP	11	Unmodified	_LAEVWGAGVGP_					0	0	0		HPS6|p.N559Mfs*54|2|0.39|ENSG00000166189|chr10:102067143-102067143|C/-|frameshift_variant;HPS6|p.L690Pfs*14|1|0.6|ENSG00000166189|chr10:102067537-102067538|-/C|frameshift_variant;HPS6|p.P730Lfs*25|1|0.3|ENSG00000166189|chr10:102067659-102067659|C/-|frameshift_variant;ENSG00000166189|ENST00000299238|HPS6	HPS6|p.N559Mfs*54|2|0.39|ENSG00000166189|chr10:102067143-102067143|C/-|frameshift_variant	HPS6|p.N559Mfs*54|2|0.39|ENSG00000166189|chr10:102067143-102067143|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	528.2779541015625	2	528.279649	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.662	1	25.662	25.162	26.162	0								0	0	0	0.90571	1	9240	9240		19.257	0	1				18019	4826	11072	11129	17306	17306					0.0196545644323578
LAEWSGSVRGP	11	Unmodified	_LAEWSGSVRGP_					0	0	0			REV__ENST00000427980.6_1_16:71879935-71879995:+|nuORF	REV__ENST00000427980.6_1_16:71879935-71879995:+|nuORF	MSMS	HCT116MG_D190212_S3	3	387.2603759765625	3	386.86825	1157.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.68	1	20.715	20.215	21.215	0.034473								0	0	0	0.95023	1	7166	7166		2.8433	0	1		+		18020	15566	11073	11130	17307	17307					0.010433423579115697
LAFLHLYI	8	Unmodified	_LAFLHLYI_					0	0	0		TMEM252|p.A118Rfs*35|1|0.26|ENSG00000181778|chr9:68537420-68537421|-/CT|frameshift_variant	TMEM252|p.A118Rfs*35|1|0.26|ENSG00000181778|chr9:68537420-68537421|-/CT|frameshift_variant	TMEM252|p.A118Rfs*35|1|0.26|ENSG00000181778|chr9:68537420-68537421|-/CT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	495.2961730957031	2	495.294571	988.574589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.152	1	47.152	46.652	47.652	0								0	0	0	0.8837	1	17908	17908		6.3541	0	1				18021	18275	11074	11131	17308	17308					0.07984440179222929
LAFPAQVAV	9	Unmodified	_LAFPAQVAV_					0	0	0		ENST00000342584.3_1_5:471473-471785:-|nuORF	ENST00000342584.3_1_5:471473-471785:-|nuORF	ENST00000342584.3_1_5:471473-471785:-|nuORF	MSMS	HCT116MG_D190212_S1	1	458.2666320800781	2	458.268553	914.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.45	1	31.45	30.95	31.95	0								0	0	0	0.64498	1	11572	11572		21.747	2.4897	1				18022	7230	11075	11132	17309	17309					0.06187276765467686
LAGAASKIT	9	Unmodified	_LAGAASKIT_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MSMS	HCT116MG_D190212_S4	4	416.24896240234375	2	416.25036	830.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.443	1	26.142	25.642	26.642	-0.30087								0	0	0	0.76834	1	9420	9420		6.7232	0	1				18023	9604	11076	11133	17310	17310					0.06414399868754117
LAGAVLEERKK	11	Unmodified	_LAGAVLEERKK_					0	0	0		ENST00000311151.9_2_8:26435492-26435624:+|nuORF	ENST00000311151.9_2_8:26435492-26435624:+|nuORF	ENST00000311151.9_2_8:26435492-26435624:+|nuORF	MSMS	HCT116MG_D190212_S2	2	607.3648681640625	2	607.366787	1212.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.733	1	41.665	41.165	42.165	-0.068199								0	0	0	0.95521	1	15778	15778		3.5965	0.8613	1				18024	7059	11077	11134	17311	17311					0.12117036868539799
LAGKPAAL	8	Unmodified	_LAGKPAAL_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MSMS	HCT116MG_D190212_S4	4	370.73553466796875	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.553	1	51.203	50.703	51.703	-0.35028								0	0	0	0.8837	1	19190	19190		0.79363	0	1		+		18025	13812	11078	11135	17312	17312					0.07907336048208435
LAGKPAAL	8	Unmodified	_LAGKPAAL_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MSMS	HCT116MG_D190212_S4	4	370.7355041503906	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.825	1	53.495	52.995	53.995	-0.32923								0	0	0	0.8837	1	20107	20107		0.69038	0	1		+		18026	13812	11078	11135	17313	17313					0.07907336048208435
LAGKPAAL	8	Unmodified	_LAGKPAAL_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MSMS	HCT116MG_D190212_S4	4	370.7354431152344	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.992	1	54.674	54.174	55.174	-0.31774								0	0	0	0.8837	1	20578	20578		0.79363	0	1		+		18027	13812	11078	11135	17314	17314					0.07907336048208435
LAGKPAAL	8	Unmodified	_LAGKPAAL_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MSMS	HCT116MG_D190212_S4	4	370.7356262207031	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.66	1	55.348	54.848	55.848	-0.312								0	0	0	0.8837	1	20847	20847		0.79363	0	1		+		18028	13812	11078	11135	17315	17315					0.07907336048208435
LAGPGEKR	8	Unmodified	_LAGPGEKR_					0	0	0			REV__KRBA1|p.Q367Nfs*25|1|0.31|ENSG00000133619|chr7:149724818-149724818|C/-|frameshift_variant	REV__KRBA1|p.Q367Nfs*25|1|0.31|ENSG00000133619|chr7:149724818-149724818|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	414.2403564453125	2	414.240327	826.466101	0.16515	6.8411E-05	-0.027021	-1.1193E-05	0.13813	5.7218E-05	414.2403101535636	26.55	0.46839	26.401	26.203	26.671	-0.14924					10	8	2	0	0	0	0.25164	1	9528	9528		63.563	2.2054	1	6806500	+		18029	16935	11079	11136	17316	17316					0.045926489288035555
LAGPLAPTA	9	Unmodified	_LAGPLAPTA_					0	0	0			REV__ENST00000498209.6_1_11:2937879-2942743:+|nuORF	REV__ENST00000498209.6_1_11:2937879-2942743:+|nuORF	MSMS	HCT116MG_D190212_S3	3	405.7396240234375	2	405.739628	809.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.669	1	42.365	41.865	42.865	-0.30352								0	0	0	0.32721	1	15902	15902		38.151	2.107	1		+		18030	16108	11080	11137	17317	17317					0.05235014840036456
LAGPPRNL	8	Unmodified	_LAGPPRNL_					0	0	0			REV__ENSG00000256591|ENST00000541135|unknown	REV__ENSG00000256591|ENST00000541135|unknown	MSMS	HCT116MG_D190212_S1	1	419.2501525878906	2	419.250695	836.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.049	1	30.049	29.549	30.549	0								0	0	0	0.8217	1	11006	11006		20.871	0	1		+		18031	14402	11081	11138	17318	17318					0.06205239308462751
LAGRDLTD	8	Unmodified	_LAGRDLTD_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000436287.1_1_1:224051789-224052101:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S4	4	430.72723388671875	2	430.727249	859.439946	0.32584	0.00014035	-0.39755	-0.00017124	-0.071708	-3.0886E-05	430.72703011289155	24.117	0.31162	23.859	23.729	24.041	-0.25816					6	5	2	0	0	0	0.72231	1	8503	8503		20.415	0	1	2961800			18032	1322;3824	11082	11139	17319	17319					0.004603349666467693
LAGRDTLD	8	Unmodified	_LAGRDTLD_					0	0	0		ENST00000392686.6_1_3:178977100-178977376:-|nuORF	ENST00000392686.6_1_3:178977100-178977376:-|nuORF	ENST00000392686.6_1_3:178977100-178977376:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	430.7269287109375	2	430.727249	859.439946	0.07285	3.1378E-05	-0.63696	-0.00027436	-0.56411	-0.00024298	430.72690808695813	23.878	0.20852	23.817	23.686	23.895	-0.061449					5	3	2	0	0	0	0.63727	1	8470	8470		29.082	0	1	3012300			18033	7615	11083	11140	17320	17320					0.004603349666695067
LAGSGARVLEV	11	Unmodified	_LAGSGARVLEV_					0	0	0			REV__ENST00000372945.7_1_10:75011633-75012373:-|nuORF	REV__ENST00000372945.7_1_10:75011633-75012373:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.1656494140625	2	536.31148	1070.60841	0.62688	0.0003362	0.14855	7.9668E-05	0.77543	0.00041587	536.3115258111256	27.197	0.26188	26.845	26.713	26.975	-0.35254					7	4	2	0	0	0	0.34227	1	9854	9854		19.257	14.928	1	23524000	+		18034	15181	11084	11141	17321	17321					0.07592816880332975
LAGVSSILGAI	11	Unmodified	_LAGVSSILGAI_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	HCT116MG_D190212_S2	2	500.8053894042969	2	500.8055	999.596446	0.2351	0.00011774	-0.3466	-0.00017358	-0.1115	-5.5839E-05	500.805254090183	44.241	0.31303	44.163	44.019	44.332	-0.078373					11	5	3	0	0	0	0.23091	1	16813	16813		71.922	2.5841	1	147410000			18035	6276	11085	11142	17322	17322					0.09663200137140393
LAHDTPLTF	9	Unmodified	_LAHDTPLTF_					0	0	0			REV__ENST00000409811.5_2_2:120015228-120020911:+|nuORF	REV__ENST00000409811.5_2_2:120015228-120020911:+|nuORF	MSMS	HCT116MG_D190212_S2	2	507.7684326171875	2	507.766374	1013.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.267	1	45.174	44.674	45.674	-0.092472								0	0	0	0.07135	1	17210	17210		64.236	0	1		+		18036	11527	11086	11143	17323	17323					0.011977675518892283
LAHLLFFHHR	10	Unmodified	_LAHLLFFHHR_					0	0	0			REV__ENST00000570016.5_1_16:29873914-29874308:-|nuORF	REV__ENST00000570016.5_1_16:29873914-29874308:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.9136047363281	3	430.912125	1289.71454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.926	1	10.926	10.426	11.426	0								0	0	0	0.96911	1	3393	3393		0.15932	0	1		+		18037	14518	11087	11144	17324	17324					0.08127617236323204
LAHQSWALL	9	Unmodified	_LAHQSWALL_					0	0	0		ENSG00000196968|ENST00000372841|FUT11;nc|ENSG00000196968|Q495W5-2|FUT11;ENST00000465695.1_1_10:75532322-75533104:+|nuORF	ENSG00000196968|ENST00000372841|FUT11	ENSG00000196968|ENST00000372841|FUT11	MSMS	HCT116MG_D190212_S1	1	519.7885131835938	2	519.790184	1037.56581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.926	1	18.926	18.426	19.426	0								0	0	0	0.768	1	6534	6534		7.9102	0.62092	1				18038	6110	11088	11145	17325	17325					0.04853466542749629
LAIEQSSQA	9	Unmodified	_LAIEQSSQA_					0	0	0		nc|ENSG00000173093|Q8NA47-2|CCDC63;ENSG00000173093|ENST00000308208|CCDC63	nc|ENSG00000173093|Q8NA47-2|CCDC63	nc|ENSG00000173093|Q8NA47-2|CCDC63	MULTI-MSMS	HCT116MG_D190212_S4	4	473.7456359863281	2	473.745639	945.476725	0.27426	0.00012993	-0.014801	-7.0119E-06	0.25946	0.00012292	473.74578032126544	31.587	0.20791	31.217	31.075	31.283	-0.37026					5	3	2	0	0	0	0.33687	1	11484	11484		26.884	5.3467	1	1703200			18039	5272	11089	11146	17326	17326					0.0018058679256682808
LAIIVYMVP	9	Unmodified	_LAIIVYMVP_					0	0	0		ENST00000495425.6_1_17:19458825-19480863:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	509.80352783203125	2	509.803914	1017.59328	0.23938	0.00012204	-0.07362	-3.7532E-05	0.16576	8.4504E-05	509.8038159770174	45.501	1.1113	45.128	44.586	45.697	-0.37266					39	23	2	0	0	0	0.7005	1	16668	16668		5.2307	5.2307	1	9348000			18040	3758	11090	11147	17327	17327					0.08518233758775295
LAKGGSQL	8	Unmodified	_LAKGGSQL_					0	0	0		SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant;SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant;SZT2|p.A1115Lfs*4|1|0.26|ENSG00000198198|chr1:43427358-43427358|G/-|frameshift_variant;SZT2|p.H875Tfs*13|1|0.16|ENSG00000198198|chr1:43425177-43425178|-/C|frameshift_variant;nc|ENSG00000198198|Q5T011-4|SZT2	SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	387.2295227050781	2	387.229428	772.444303	-0.018144	-7.0257E-06	0.080638	3.1225E-05	0.062495	2.42E-05	387.22939552685494	21.112	0.31168	20.729	20.598	20.91	-0.38288					11	5	3	0	0	0	0.48901	1	7420	7420		42.095	9.7891	1	50608000			18041	6212	11091	11148	17328	17328					0.048978441802432826
LAKPTLPIKT	10	Unmodified	_LAKPTLPIKT_					0	0	0		nc|ENSG00000164220|O00254-2|F2RL2;ENSG00000164220|ENST00000296641|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	MSMS	HCT116MG_D190212_S4	4	361.1947021484375	3	361.237504	1080.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.52	1	58.237	57.737	58.737	-0.28305								0	0	0	0.96836	1	21997	21997		0.62683	0.063655	1				18042	4684	11092	11149	17329	17329					0.15356338959304594
LAKRVGAR	8	Unmodified	_LAKRVGAR_					0	0	0		nc|ENSG00000115652|Q8NBZ7-3|UXS1;nc|ENSG00000115652|Q8NBZ7|UXS1;ENSG00000115652|ENST00000283148|UXS1	nc|ENSG00000115652|Q8NBZ7-3|UXS1	nc|ENSG00000115652|Q8NBZ7-3|UXS1	MSMS	HCT116MG_D190212_S1	1	435.7855529785156	2	435.785236	869.555919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.086	1	56.086	55.586	56.586	0								0	0	0	0.8837	1	21554	21554		2.3027	0	1				18043	2478	11093	11150	17330	17330					0.11592323328045495
LAKTSRRRQP	10	Unmodified	_LAKTSRRRQP_					0	0	0		ENST00000585058.1_1_17:29850640-29851216:+|nuORF	ENST00000585058.1_1_17:29850640-29851216:+|nuORF	ENST00000585058.1_1_17:29850640-29851216:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	405.2486877441406	3	404.914305	1211.72109	0.10276	4.161E-05	0.25595	0.00010364	0.35871	0.00014525	405.24870390501826	17.228	0.20853	17.228	17.098	17.307	0					5	3	2	0	0	0	0.86862	1	5875	5875		3.3196	0.47636	1	4208700			18044	8983	11094	11151	17331	17331					0.12369510397024897
LAKVAKPE	8	Unmodified	_LAKVAKPE_					0	0	0			REV__nc|ENSG00000215695|Q92681|RSC1A1	REV__nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	HCT116MG_D190212_S1	1	855.5315551757812	1	855.52983	854.522553	0.72323	0.00061874	0.819	0.00070068	1.5422	0.0013194	855.5307185111701	56.815	0.15602	56.815	56.737	56.893	0					4	2	2	0	0	0	0.5791	1	21874	21874		34.187	0	1	34146000	+		18045	17293	11095	11152	17332	17332					0.0894727676546836
LAKVKHFRLR	10	Unmodified	_LAKVKHFRLR_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MSMS	HCT116MG_D190212_S4	4	423.275634765625	3	423.275175	1266.80369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.88	1	61.626	61.126	62.126	-0.25457								0	0	0	0.97045	1	23356	23356		0.15932	0	1		+		18046	14157	11096	11153	17333	17333					0.18096452195823076
LALFAWTLP	9	Unmodified	_LALFAWTLP_					0	0	0			REV__NRP2|p.V9A|1|0.12|ENSG00000118257|chr2:205683316-205683316|T/C|missense_variant	REV__NRP2|p.V9A|1|0.12|ENSG00000118257|chr2:205683316-205683316|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	515.8295288085938	2	516.299853	1030.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.506	1	44.133	43.633	44.633	-0.37338								0	0	0	0.76781	1	16399	16399		8.5933	0.68312	1		+		18047	17354	11097	11154	17334	17334					0.07108422833653094
LALGARRK	8	Unmodified	_LALGARRK_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	HCT116MG_D190212_S1	1	443.2786865234375	2	442.793061	883.571569	-0.014638	-6.4817E-06	0.34755	0.00015389	0.33292	0.00014741	442.79307675215136	57.447	0.93348	57.447	57.049	57.982	0					32	17	3	0	0	0	0.33446	1	22078	22078		2.3027	0	1	11618000			18048	3414	11098	11155	17335	17335					0.12512609845077804
LALHWKLTKRK	11	Unmodified	_LALHWKLTKRK_					0	0	0		ENSG00000204116|ENST00000373502|CHIC1	ENSG00000204116|ENST00000373502|CHIC1	ENSG00000204116|ENST00000373502|CHIC1	MSMS	HCT116MG_D190212_S3	3	697.3562622070312	2	697.443163	1392.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.12	1	55.832	55.332	56.332	-0.28773								0	0	0	0.95925	1	21298	21298		1.4819	0	1				18049	6320	11099	11156	17336	17336					0.19105277055791703
LALLCSGHGAV	11	Unmodified	_LALLCSGHGAV_					0	0	0		nc|ENSG00000110455|Q96QU6-2|ACCS	nc|ENSG00000110455|Q96QU6-2|ACCS	nc|ENSG00000110455|Q96QU6-2|ACCS	MULTI-MSMS	HCT116MG_D190212_S1	1	520.7853393554688	2	520.781502	1039.54845	0.59934	0.00031212	1.5983	0.00083236	2.1976	0.0011445	521.2821412409679	29.128	0.26134	29.128	29.007	29.269	0					11	4	3	0	0	0	0.57714	1	10642	10642		37.974	3.8716	1	11030000			18050	9421	11100	11157	17337	17337					0.030258029454444113
LALPDRLEL	9	Unmodified	_LALPDRLEL_					0	0	0			REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	520.3111572265625	2	520.310949	1038.60735	0.30053	0.00015637	0.65736	0.00034203	0.95789	0.0004984	520.3112884227963	51.238	0.46522	51.059	50.81	51.275	-0.17868					15	8	2	0	0	0	0.2853	1	19672	19672		32.305	6.0373	1	19533000	+		18051	14535	11101	11158	17338	17338					0.08958602511415847
LALPRALQ	8	Unmodified	_LALPRALQ_					0	0	0		ENST00000597244.1_1_19:16688850-16689066:-|nuORF	ENST00000597244.1_1_19:16688850-16689066:-|nuORF	ENST00000597244.1_1_19:16688850-16689066:-|nuORF	MSMS	HCT116MG_D190212_S2	2	441.2821960449219	2	441.281995	880.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.673	1	44.588	44.088	45.088	-0.084797								0	0	0	0.17647	1	16970	16970		70.716	3.3717	1				18052	9070	11102	11159	17339	17339					0.10438385376642145
LALRGELQRR	10	Unmodified	_LALRGELQRR_					0	0	0			REV__SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant	REV__SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	404.58184814453125	3	404.582556	1210.72584	-0.2244	-9.0787E-05	-0.99498	-0.00040255	-1.2194	-0.00049334	404.5820662006819	51.168	0.36182	51.168	50.833	51.194	0					10	6	2	0	0	0	0.88752	1	19546	19546		0.69767	0	1	17031000	+		18053	14209	11103	11160	17340	17340					0.12890394539772387
LALRYRLRYRR	11	Unmodified	_LALRYRLRYRR_					0	0	0			REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	769.385986328125	2	768.473318	1534.93208	1.0526	0.00080893	3.4605	0.0026593	4.5131	0.0034682	768.4753753265908	55.925	0.30812	55.74	55.587	55.895	-0.18565					10	5	2	0	0	0	0.74191	1	21507	21507		1.4819	1.4819	1	9692700	+		18054	16703	11104	11161	17341	17341					0.18601387438911843
LAMAPHCV	8	Unmodified	_LAMAPHCV_					0	0	0			REV__ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant	REV__ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	421.2069091796875	2	421.206584	840.398615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.508	1	58.225	57.725	58.725	-0.28305								0	0	0	0.8837	1	21992	21992		2.8892	0.31174	1		+		18055	12495	11105	11162	17342	17342					-0.027968405980118405
LAMTALTVR	9	Unmodified	_LAMTALTVR_					0	0	0		ENST00000512400.1_1_4:675749-678780:-|nuORF;nc|ENSG00000169026|Q6UXD7-3|SLC49A3;ENSG00000169026|ENST00000322224|SLC49A3;nc|ENSG00000169026|Q6UXD7|SLC49A3	ENST00000512400.1_1_4:675749-678780:-|nuORF	ENST00000512400.1_1_4:675749-678780:-|nuORF	MSMS	HCT116MG_D190212_S1	1	488.212890625	2	488.28642	974.558287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.637	1	58.637	58.137	59.137	0								0	0	0	0.76902	1	22594	22594		4.3292	0	1				18056	5045	11106	11163	17343	17343					0.06998990950819461
LAPAGRGRA	9	Unmodified	_LAPAGRGRA_					0	0	0		ENST00000377060.7_1_2:97482238-97482397:+|nuORF	ENST00000377060.7_1_2:97482238-97482397:+|nuORF	ENST00000377060.7_1_2:97482238-97482397:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	434.7588195800781	2	434.759218	867.503883	0.031788	1.382E-05	0.73478	0.00031945	0.76657	0.00033327	434.75950144916015	47.29	2.2243	47.29	46.595	48.819	0					86	43	5	0	0	0	0.71898	2	17810	17810;18266		3.9444	0.3479	1	6832499999.999999			18057	7520	11107	11164	17344;17345	17344					0.06483159914273529
LAPAGRGRA	9	Unmodified	_LAPAGRGRA_					0	0	0		ENST00000377060.7_1_2:97482238-97482397:+|nuORF	ENST00000377060.7_1_2:97482238-97482397:+|nuORF	ENST00000377060.7_1_2:97482238-97482397:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	434.7590637207031	2	434.759218	867.503883	0.24389	0.00010603	0.10431	4.535E-05	0.3482	0.00015138	434.7591734106412	48.274	1.7736	47.958	47.411	49.184	-0.31596					86	33	5	0	0	0	0.71898	2	18053	18053;18280		3.9444	0	1	279490000			18058	7520	11107	11164	17346;17347	17346					0.06483159914273529
LAPAKNRR	8	Unmodified	_LAPAKNRR_					0	0	0			REV__ENST00000487177.5_1_1:1019836-1022648:-|nuORF	REV__ENST00000487177.5_1_1:1019836-1022648:-|nuORF	MSMS	HCT116MG_D190212_S4	4	463.2877502441406	2	463.288143	924.561733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.44	1	55.124	54.624	55.624	-0.31638								0	0	0	0.8837	1	20758	20758		2.5775	0	1		+		18059	11964	11108	11165	17348	17348					0.0964342183970075
LAPLAKVIH	9	Unmodified	_LAPLAKVIH_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000515281.1_1_11:88141588-88141981:-|nuORF;ENST00000423411.2_1_6:135940529-135940997:-|nuORF;GAPDHS|p.Y327Lfs*26|1|0.12|ENSG00000105679|chr19:35543744-35543745|-/C|frameshift_variant;ENSG00000105679|ENST00000222286|GAPDHS	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	MSMS	HCT116MG_D190212_S1	1	481.31280517578125	2	481.313295	960.612037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.975	1	33.975	33.475	34.475	0								0	0	0	0.76877	1	12591	12591		5.2307	0	1				18060	2300	11109	11166	17349	17349					0.130155314448416
LAPLLRRTNQ	10	Unmodified	_LAPLLRRTNQ_					0	0	0		ENST00000417647.6_1_5:140032665-140033557:+|nuORF	ENST00000417647.6_1_5:140032665-140033557:+|nuORF	ENST00000417647.6_1_5:140032665-140033557:+|nuORF	MSMS	HCT116MG_D190212_S4	4	591.358642578125	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.163	1	61.912	61.412	62.412	-0.25068								0	0	0	0.96911	1	23469	23469		0.45834	0.057624	1				18061	7766	11110	11167	17350	17350					0.12091589791248225
LAPQTYLNG	9	Unmodified	_LAPQTYLNG_					0	0	0		AKNAD1|p.N719Kfs*23|1|0.16|ENSG00000162641|chr1:108823380-108823381|-/T|frameshift_variant;nc|ENSG00000162641|Q5T1N1-4|AKNAD1;ENSG00000162641|ENST00000370001|AKNAD1	AKNAD1|p.N719Kfs*23|1|0.16|ENSG00000162641|chr1:108823380-108823381|-/T|frameshift_variant	AKNAD1|p.N719Kfs*23|1|0.16|ENSG00000162641|chr1:108823380-108823381|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	488.75799560546875	2	488.758549	975.502546	0.35856	0.00017525	-1.0115	-0.00049436	-0.6529	-0.00031911	488.7577241548611	45.601	0.41854	45.601	45.347	45.765	0					13	7	3	0	0	0	0.60612	1	17280	17280		10.824	0	1	9051000			18062	88	11111	11168	17351	17351					0.013814810348435458
LAPRPKGP	8	Unmodified	_LAPRPKGP_					0	0	0		ENST00000273067.4_1_2:217235990-217236398:-|nuORF	ENST00000273067.4_1_2:217235990-217236398:-|nuORF	ENST00000273067.4_1_2:217235990-217236398:-|nuORF	MSMS	HCT116MG_D190212_S1	1	418.26104736328125	2	418.261062	834.507572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.059	1	16.059	15.559	16.559	0								0	0	0	0.8837	1	5379	5379		6.3541	0	1				18063	6925	11112	11169	17352	17352					0.08369829688137997
LAPVLFILAI	10	Unmodified	_LAPVLFILAI_					0	0	0		nc|ENSG00000206190|O60312-2|ATP10A;ATP10A|p.K791Rfs*28|1|0.23|ENSG00000206190|chr15:25708273-25708273|T/-|frameshift_variant;ENSG00000206190|ENST00000555815|ATP10A	nc|ENSG00000206190|O60312-2|ATP10A	nc|ENSG00000206190|O60312-2|ATP10A	MSMS	HCT116MG_D190212_S4	4	357.2383728027344	3	357.238844	1068.6947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.103	1	37.721	37.221	38.221	-0.38283								0	0	0	0.96769	1	13952	13952		0.77653	0	1				18064	221	11113	11170	17353	17353					0.16310428452970882
LAQPRLPEVP	10	Unmodified	_LAQPRLPEVP_					0	0	0		ENST00000359692.10_3_19:10942263-10942479:+|nuORF	ENST00000359692.10_3_19:10942263-10942479:+|nuORF	ENST00000359692.10_3_19:10942263-10942479:+|nuORF	MSMS	HCT116MG_D190212_S3	3	559.9418334960938	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.174	1	39.872	39.372	40.372	-0.30137								0	0	0	0.94339	1	14906	14906		6.2058	1.3088	1				18065	7341	11114	11171	17354	17354					0.09021693777026485
LAQQRHAQP	9	Unmodified	_LAQQRHAQP_					0	0	0			REV__ZBTB37|p.I398Dfs*70|1|0.34|ENSG00000185278|chr1:173885799-173885800|-/G|frameshift_variant	REV__ZBTB37|p.I398Dfs*70|1|0.34|ENSG00000185278|chr1:173885799-173885800|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	350.1944274902344	3	350.193068	1047.55738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.486	1	43.112	42.612	43.612	-0.37433								0	0	0	0.76967	1	15986	15986		1.0715	0	1		+		18066	18063	11115	11172	17355	17355					0.03549912626135665
LAREYLQLAD	10	Unmodified	_LAREYLQLAD_					0	0	0		ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	MULTI-MSMS	HCT116MG_D190212_S4	4	596.3219604492188	2	596.322045	1190.62954	1.0661	0.00063575	-0.49609	-0.00029583	0.57004	0.00033993	596.3219025520455	39.347	0.1657	38.967	38.849	39.015	-0.38055					8	3	3	0	0	0	0.37453	1	14472	14472		43.982	9.0498	1	2530700			18067	5031	11116	11173	17356	17356					0.04184782189190628
LAREYLQLAD	10	Unmodified	_LAREYLQLAD_					0	0	0		ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	MULTI-MATCH	HCT116MG_D190212_S3	3		2	596.322045	1190.62954	0.61218	0.00036506	0.40783	0.0002432	1.02	0.00060825	596.3222530842464	39.251	0.21401	38.95	38.82	39.034	-0.30137	-0.0084806	0.00044386	NaN	43.982	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4233600			18068	5031	11116	11173							0.04184782189190628
LARGELEGLI	10	Unmodified	_LARGELEGLI_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10;NLRP10|p.H474Mfs*7|1|0.12|ENSG00000182261|chr11:7960193-7960193|A/-|frameshift_variant;NLRP10|p.R280Mfs*19|1|0.08|ENSG00000182261|chr11:7960773-7960774|-/CA|frameshift_variant	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-SECPEP	HCT116MG_D190212_S1	1	536.166015625	2	535.813856	1069.61316	0.53445	0.00028637	0.29921	0.00016032	0.83366	0.00044669	535.8140406441768	46.208	0.20647	46.208	46.079	46.285	0					5	3	2	0	0	0	0.30895	1	17540	17540		3.2813	0	1	6592400			18069	5665	11117	11174	17357	17357					0.08113701023103204
LARGELEGLI	10	Unmodified	_LARGELEGLI_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10;NLRP10|p.H474Mfs*7|1|0.12|ENSG00000182261|chr11:7960193-7960193|A/-|frameshift_variant;NLRP10|p.R280Mfs*19|1|0.08|ENSG00000182261|chr11:7960773-7960774|-/CA|frameshift_variant	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-MATCH	HCT116MG_D190212_S2	2		2	535.813856	1069.61316	0.42575	0.00022812	-0.91853	-0.00049216	-0.49278	-0.00026404	535.8130466383387	46.299	0.15503	46.188	46.059	46.214	-0.11121	-0.01001	-0.0012388	NaN	3.2813	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12546000			18070	5665	11117	11174							0.08113701023103204
LARGRYLSF	9	Unmodified	_LARGRYLSF_					0	0	0			REV__SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	REV__SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	541.8097534179688	2	541.808908	1081.60326	0.2964	0.00016059	-0.037654	-2.0401E-05	0.25874	0.00014019	541.808312128398	49.417	0.30387	49.263	49.086	49.39	-0.15405					8	5	2	0	0	0	0.13706	1	18946	18946		50.855	2.5092	1	33832000	+		18071	10773	11118	11175	17358	17358					0.06572557808340207
LARGSGGP	8	Unmodified	_LARGSGGP_					0	0	0			REV__ENSG00000168005|ENST00000294244|SPINDOC	REV__ENSG00000168005|ENST00000294244|SPINDOC	MSMS	HCT116MG_D190212_S1	1	357.6976623535156	2	357.698295	713.382037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.126	1	42.126	41.626	42.626	0								0	0	0	0.8837	1	15880	15880		2.8892	0	1		+		18072	13179	11119	11176	17359	17359					0.013881178319024912
LARIIRVIL	9	Unmodified	_LARIIRVIL_					0	0	0		nc|ENSG00000188782|Q7RTX7-2|CATSPER4;ENSG00000188782|ENST00000456354|CATSPER4	nc|ENSG00000188782|Q7RTX7-2|CATSPER4	nc|ENSG00000188782|Q7RTX7-2|CATSPER4	MSMS	HCT116MG_D190212_S2	2	356.2541809082031	3	356.253488	1065.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.616	1	25.247	24.747	25.747	-0.36914								0	0	0	0.77018	1	9232	9232		0.26902	0	1				18073	6000	11120	11177	17360	17360					0.20839457669990225
LARKRFYRQ	9	Unmodified	_LARKRFYRQ_					0	0	0			REV__ENST00000464829.5_1_9:33469476-33469833:-|nuORF	REV__ENST00000464829.5_1_9:33469476-33469833:-|nuORF	MSMS	HCT116MG_D190212_S3	3	413.2476501464844	3	413.247396	1236.72036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.484	1	62.253	61.753	62.753	-0.23129								0	0	0	0.76973	1	23869	23869		0.96228	0.55401	1		+		18074	13045	11121	11178	17361	17361					0.11146715747986491
LARLANGPAAP	11	Unmodified	_LARLANGPAAP_					0	0	0			REV__nc|ENSG00000284479|A0A1B0GW54|SMIM39	REV__nc|ENSG00000284479|A0A1B0GW54|SMIM39	MSMS	HCT116MG_D190212_S4	4	525.5806274414062	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.038	1	48.673	48.173	49.173	-0.365								0	0	0	0.95581	1	18176	18176		3.2813	0.70383	1		+		18075	17321	11122	11179	17362	17362					0.07536253945750104
LARLPLLTRL	10	Unmodified	_LARLPLLTRL_					0	0	0		ENST00000527357.5_1_11:801679-803120:-|nuORF;ENST00000534525.5_1_11:799959-803120:-|nuORF;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1	ENST00000527357.5_1_11:801679-803120:-|nuORF	ENST00000527357.5_1_11:801679-803120:-|nuORF	MSMS	HCT116MG_D190212_S1	1	389.264404296875	3	389.264164	1164.77066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.374	1	36.374	35.874	36.874	0								0	0	0	0.96337	1	13558	13558		1.7423	1.1791	1				18076	5462	11123	11180	17363	17363					0.19486825353124004
LARQLGKA	8	Unmodified	_LARQLGKA_					0	0	0			REV__ENST00000588736.1_1_17:74041371-74044231:-|nuORF	REV__ENST00000588736.1_1_17:74041371-74044231:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	429.0885925292969	2	428.771794	855.529036	0.36768	0.00015765	-0.50985	-0.00021861	-0.14218	-6.0961E-05	428.77158904353536	28.713	0.26019	28.507	28.281	28.541	-0.20593					6	4	2	0	0	0	0.31507	1	10366	10366		9.3474	3.587	1	6357300	+		18077	13172	11124	11181	17364	17364					0.0954921471684429
LARRARLPFRR	11	Unmodified	_LARRARLPFRR_					0	0	0		ENST00000424094.6_1_20:57394171-57417508:-|nuORF	ENST00000424094.6_1_20:57394171-57417508:-|nuORF	ENST00000424094.6_1_20:57394171-57417508:-|nuORF	MSMS	HCT116MG_D190212_S1	1	706.448486328125	2	706.447103	1410.87965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.726	1	57.726	57.226	58.226	0								0	0	0	0.95581	1	22219	22219		3.2813	0	1				18078	7803	11125	11182	17365	17365					0.1906484909595747
LARRGSGL	8	Unmodified	_LARRGSGL_					0	0	0		ENST00000359591.8_1_14:23340922-23341210:+|nuORF	ENST00000359591.8_1_14:23340922-23341210:+|nuORF	ENST00000359591.8_1_14:23340922-23341210:+|nuORF	MSMS	HCT116MG_D190212_S4	4	415.2534484863281	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.358	1	60.092	59.592	60.592	-0.26582								0	0	0	0.8837	1	22740	22740		2.5775	0.27475	1				18079	7340	11126	11183	17366	17366					0.07187757540009443
LARRPAARR	9	Unmodified	_LARRPAARR_					0	0	0			REV__ENST00000263207.7_1_22:19978271-20004293:-|nuORF	REV__ENST00000263207.7_1_22:19978271-20004293:-|nuORF	MSMS	HCT116MG_D190212_S4	4	356.2276916503906	3	356.228336	1065.66318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.202	1	37.819	37.319	38.319	-0.38283								0	0	0	0.77018	1	13992	13992		0.26902	0	1		+		18080	14648	11127	11184	17367	17367					0.1329729326225788
LARRRYRKMLE	11	Unmodified	_LARRRYRKMLE_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000559434.1_1_15:52529600-52534394:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MSMS	HCT116MG_D190212_S4	4	497.9607238769531	3	497.96115	1490.86162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.987	1	49.628	49.128	50.128	-0.35878								0	0	0	0.96121	1	18557	18557		0.45452	0	1				18081	3015	11128	11185	17368	17368					0.13582346058956318
LARSATPP	8	Unmodified	_LARSATPP_					0	0	0			REV__ENST00000598846.1_1_1:1635046-1639660:-|nuORF	REV__ENST00000598846.1_1_1:1635046-1639660:-|nuORF	MSMS	HCT116MG_D190212_S4	4	406.7331848144531	2	406.734877	811.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.441	1	42.065	41.565	42.565	-0.37565								0	0	0	0.8837	1	15599	15599		2.8892	0.31174	1		+		18082	16737	11129	11186	17369	17369					0.04193246554507368
LARTRSRESC	10	Unmodified	_LARTRSRESC_					0	0	0		nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2	nc|ENSG00000055118|Q12809-5|KCNH2	nc|ENSG00000055118|Q12809-5|KCNH2	MSMS	HCT116MG_D190212_S1	1	589.8064575195312	2	589.806571	1177.59859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.481	1	24.481	23.981	24.981	0								0	0	0	0.93202	1	8766	8766		8.7454	0.83525	1				18083	1076	11130	11187	17370	17370					0.01689305603304092
LARWTVLAQPV	11	Unmodified	_LARWTVLAQPV_					0	0	0			REV__ROBO4|p.A694T|1|0.34|ENSG00000154133|chr11:124887476-124887476|C/T|missense_variant	REV__ROBO4|p.A694T|1|0.34|ENSG00000154133|chr11:124887476-124887476|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	627.3712158203125	2	627.371872	1252.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.345	1	37.242	36.742	37.742	-0.10318								0	0	0	0.91433	1	13995	13995		18.146	4.2403	1		+		18084	17479	11131	11188	17371	17371					0.11293644593774843
LASAALAGPA	10	Unmodified	_LASAALAGPA_					0	0	0		ENST00000564063.1_1_1:108742725-108743325:+|nuORF	ENST00000564063.1_1_1:108742725-108743325:+|nuORF	ENST00000564063.1_1_1:108742725-108743325:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	421.2427062988281	2	421.242535	840.470518	-0.028627	-1.2059E-05	0.2112	8.8968E-05	0.18258	7.6909E-05	421.2426210665626	23.706	0.2616	23.706	23.575	23.837	0					7	4	2	0	0	0	0.14986	1	8479	8479		64.236	6.765	1	8356900			18085	8842	11132	11189	17372	17372					0.043901133517124435
LASAALAGPA	10	Unmodified	_LASAALAGPA_					0	0	0		ENST00000564063.1_1_1:108742725-108743325:+|nuORF	ENST00000564063.1_1_1:108742725-108743325:+|nuORF	ENST00000564063.1_1_1:108742725-108743325:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	421.242431640625	2	421.242535	840.470518	0.30658	0.00012915	0.026129	1.1007E-05	0.33271	0.00014015	421.24242811082655	24.124	0.20705	23.744	23.615	23.822	-0.38003					5	3	2	0	0	0	0.14986	1	8658	8658		64.236	2.8788	1	9123800			18086	8842	11132	11189	17373	17373					0.043901133517124435
LASALLEVV	9	Unmodified	_LASALLEVV_					0	0	0			REV__ENSG00000164494|ENST00000369037|PDSS2	REV__ENSG00000164494|ENST00000369037|PDSS2	MULTI-MSMS	HCT116MG_D190212_S2	2	914.5562744140625	1	914.55571	913.548434	0.77164	0.00070571	0.031986	2.9253E-05	0.80363	0.00073496	914.5554736756927	56.892	0.21011	56.713	56.582	56.792	-0.17904					8	3	3	0	0	0	0.088989	1	21981	21981		60.39	6.814	1	40072000	+		18087	13008	11133	11190	17374	17374					0.08820126217096913
LASALLEVV	9	Unmodified	_LASALLEVV_					0	0	0			REV__ENSG00000164494|ENST00000369037|PDSS2	REV__ENSG00000164494|ENST00000369037|PDSS2	MULTI-SECPEP	HCT116MG_D190212_S3	3	914.5568237304688	1	914.55571	913.548434	0.89662	0.00082001	-0.94581	-0.00086499	-0.04919	-4.4987E-05	914.5551609622104	56.982	0.20831	56.703	56.625	56.833	-0.27913					5	3	2	0	0	0	0.25723	1	21677	21677		12.532	0	1	909880	+		18088	13008	11133	11190	17375	17375					0.08820126217096913
LASALLEVV	9	Unmodified	_LASALLEVV_					0	0	0			REV__ENSG00000164494|ENST00000369037|PDSS2	REV__ENSG00000164494|ENST00000369037|PDSS2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	914.55571	913.548434	0.84253	0.00077054	-1.6119	-0.0014742	-0.76937	-0.00070363	914.5534356236415	56.763	0.51744	56.763	56.531	57.049	0	0.036906	-0.0012936	NaN	60.39	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6842200	+		18089	13008	11133	11190							0.08820126217096913
LASALLEVV	9	Unmodified	_LASALLEVV_					0	0	0			REV__ENSG00000164494|ENST00000369037|PDSS2	REV__ENSG00000164494|ENST00000369037|PDSS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	914.55571	913.548434	0.77164	0.00070571	0.031986	2.9253E-05	0.80363	0.00073496	914.5554736756927	56.892	0.21011	56.713	56.582	56.792	-0.17904	-0.013338	0.00020978	NaN	60.39	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40072000	+		18090	13008	11133	11190							0.08820126217096913
LASGFDSESES	11	Unmodified	_LASGFDSESES_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF;ENST00000469563.1_1_1:894013-894620:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	HCT116MG_D190212_S2	2	565.2979736328125	2	564.738208	1127.46186	0.81601	0.00046083	3.9094	0.0022078	4.7254	0.0026686	564.7395231920874	36.059	0.30974	35.931	35.709	36.019	-0.12799					12	5	4	0	0	0	0.3453	1	13503	13503		24.021	13.197	1	9279700			18091	6009	11134	11191	17376	17376					-0.0967694986609331
LASLTGGVLI	10	Unmodified	_LASLTGGVLI_					0	0	0		ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MSMS	HCT116MG_D190212_S2	2	472.2947692871094	2	472.294768	942.574983	0.19343	9.1355E-05	-0.14938	-7.0553E-05	0.044043	2.0801E-05	472.2945741732033	45.529	0.30874	45.436	45.256	45.565	-0.092472					12	5	3	0	0	0	0.042428	1	17323	17323		92.822	3.4214	1	158030000			18092	3947	11135	11192	17377	17377					0.10139815108436778
LASLTGGVLI	10	Unmodified	_LASLTGGVLI_					0	0	0		ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	472.294768	942.574983	0.28476	0.00013449	-0.0057263	-2.7045E-06	0.27903	0.00013178	472.29473135868597	45.558	0.31311	45.558	45.347	45.66	0	0.060717	3.4724E-05	NaN	92.822	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38650000			18093	3947	11135	11192							0.10139815108436778
LASVLQLNPC	10	Unmodified	_LASVLQLNPC_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2935180664062	2	529.289159	1056.56377	0.12966	6.863E-05	0.7769	0.00041121	0.90657	0.00047984	529.2890671900375	48.1	0.66099	48.1	47.696	48.357	0					18	12	3	0	0	0	0.86339	1	18381	18381		6.7232	1.4925	1	10491000			18094	1805	11136	11193	17378	17378					0.037746697426428
LASVVARHS	9	Unmodified	_LASVVARHS_					0	0	0			REV__ENST00000254508.6_1_3:13358912-13359077:-|nuORF	REV__ENST00000254508.6_1_3:13358912-13359077:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	470.27191162109375	2	470.272158	938.529764	0.18325	8.6177E-05	0.1953	9.1845E-05	0.37855	0.00017802	470.2722086788767	47.569	0.3011	47.569	47.441	47.742	0					8	5	2	0	0	0	0.67781	1	18104	18104		6.7232	0	1	21882000	+		18095	14599	11137	11194	17379	17379					0.05804009365908769
LATQLGGPA	9	Unmodified	_LATQLGGPA_					0	0	0			REV__ENST00000561547.5_1_16:28890323-28891133:-|nuORF	REV__ENST00000561547.5_1_16:28890323-28891133:-|nuORF	MSMS	HCT116MG_D190212_S4	4	414.23358154296875	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.813	1	26.503	26.003	27.003	-0.31002								0	0	0	0.30227	1	9570	9570		39.957	3.8303	1		+		18096	16495	11138	11195	17380	17380					0.034698268346687655
LATRETPAAPP	11	Unmodified	_LATRETPAAPP_					0	0	0		ENST00000261211.7_1_12:96728621-96793984:-|nuORF	ENST00000261211.7_1_12:96728621-96793984:-|nuORF	ENST00000261211.7_1_12:96728621-96793984:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	562.3076782226562	2	562.308938	1122.60332	0.48921	0.00027509	-2.871	-0.0016144	-2.3818	-0.0013393	562.3067719727599	17.959	0.2607	17.959	17.88	18.141	0					5	4	2	0	0	0	0.74191	1	6184	6184		5.2969	0.39987	1	2131700			18097	6847	11139	11196	17381	17381					0.046925130176987295
LATRETPAAPP	11	Unmodified	_LATRETPAAPP_					0	0	0		ENST00000261211.7_1_12:96728621-96793984:-|nuORF	ENST00000261211.7_1_12:96728621-96793984:-|nuORF	ENST00000261211.7_1_12:96728621-96793984:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	562.308938	1122.60332	0.018615	1.0467E-05	-2.5774	-0.0014493	-2.5588	-0.0014388	562.3078462825933	18.71	0.20734	18.346	18.217	18.425	-0.36325	0.19391	0.00016515	NaN	5.2969	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6946800			18098	6847	11139	11196							0.046925130176987295
LATVAILP	8	Unmodified	_LATVAILP_					0	0	0		PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant;nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6;ENST00000456970.6_1_16:16251574-16267200:-|nuORF;ENSG00000091262|ENST00000205557|ABCC6	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	PNPLA6|p.S1175Pfs*10|1|0.55|ENSG00000032444|chr19:7558944-7558944|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	399.2600402832031	2	399.260197	796.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.954	1	33.57	33.07	34.07	-0.38426								0	0	0	0.80194	1	12379	12379		22.453	0	1				18099	969	11140	11197	17382	17382					0.09944775879523604
LATVTKRKD	9	Unmodified	_LATVTKRKD_					0	0	0			REV__ENSG00000197584|ENST00000452583|KCNMB2	REV__ENSG00000197584|ENST00000452583|KCNMB2	MULTI-MSMS	HCT116MG_D190212_S2	2	516.3143920898438	2	516.314023	1030.61349	0.1009	5.2095E-05	0.30326	0.00015658	0.40416	0.00020867	516.3140653962757	53.341	1.0317	53.152	52.604	53.636	-0.18922					46	19	3	0	0	0	0.66792	1	20415	20415		7.2892	0	1	66077000	+		18100	14079	11141	11198	17383	17383					0.09941120742928433
LAVICMVW	8	Unmodified	_LAVICMVW_					0	0	0		ENSG00000164604|ENST00000424100|GPR85	ENSG00000164604|ENST00000424100|GPR85	ENSG00000164604|ENST00000424100|GPR85	MSMS	HCT116MG_D190212_S1	1	467.7493591308594	2	467.748085	933.481616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.278	1	59.278	58.778	59.778	0								0	0	0	0.8837	1	22846	22846		0.79363	0	1				18101	4707	11142	11199	17384	17384					0.012214761299901511
LAVLCKNYLF	10	Unmodified	_LAVLCKNYLF_					0	0	0		ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	MSMS	HCT116MG_D190212_S2	2	592.3325805664062	2	592.330827	1182.6471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.909	1	51.725	51.225	52.225	-0.18369								0	0	0	0.93576	1	19928	19928		7.9102	0	1				18102	5508	11143	11200	17385	17385					0.06308406190464666
LAVSRVITW	9	Unmodified	_LAVSRVITW_					0	0	0		nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122|CLASP2;CLASP2|p.L1169Ffs*6|1|0.14|ENSG00000163539|chr3:33510729-33510730|-/A|frameshift_variant;ENSG00000163539|ENST00000682230|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	MSMS	HCT116MG_D190212_S1	1	522.8114624023438	2	522.813659	1043.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.891	1	50.891	50.391	51.391	0								0	0	0	0.768	1	19430	19430		7.9102	0.62092	1				18103	9520	11144	11201	17386	17386					0.09270326093883341
LAVVAHPNWE	10	Unmodified	_LAVVAHPNWE_					0	0	0			REV__TRMT12|p.N369Kfs*12|1|0.36|ENSG00000183665|chr8:124452031-124452032|-/A|frameshift_variant	REV__TRMT12|p.N369Kfs*12|1|0.36|ENSG00000183665|chr8:124452031-124452032|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	567.7867431640625	2	568.298373	1134.58219	0.48497	0.0002756	-1.3488	-0.00076654	-0.86387	-0.00049094	568.7987216380424	57.67	0.15524	57.495	57.418	57.574	-0.17494					6	2	3	0	0	0	0.31093	1	22241	22241		4.3292	2.6766	1	9124800	+		18104	13772	11145	11202	17387	17387					0.020285477088464177
LAWKCIPI	8	Unmodified	_LAWKCIPI_					0	0	0		ENST00000431759.5_1_1:43425139-43436002:+|nuORF	ENST00000431759.5_1_1:43425139-43436002:+|nuORF	ENST00000431759.5_1_1:43425139-43436002:+|nuORF	MSMS	HCT116MG_D190212_S1	1	472.2752685546875	2	472.275324	942.536095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.371	1	62.371	61.871	62.871	0								0	0	0	0.8837	1	24083	24083		0.79363	0	1				18105	7858	11146	11203	17388	17388					0.06252811273066072
LAWRTWLTDK	10	Unmodified	_LAWRTWLTDK_					0	0	0			REV__tr|U7T3W8|U7T3W8_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00288PE=4SV=1	REV__tr|U7T3W8|U7T3W8_FUSNUP-typeconjugativetransferproteinTrbLOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00288PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	645.3513793945312	2	645.35368	1288.69281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.137	1	37.836	37.336	38.336	-0.30137								0	0	0	0.91638	1	14117	14117		12.241	0.74595	1		+		18106	17959	11147	11204	17389	17389					0.06000767697082665
LAYLLRRP	8	Unmodified	_LAYLLRRP_					0	0	0		ENST00000560171.5_1_14:24584803-24587615:+|nuORF;ENST00000561016.5_1_14:24584803-24586603:+|nuORF	ENST00000560171.5_1_14:24584803-24587615:+|nuORF	ENST00000560171.5_1_14:24584803-24587615:+|nuORF	MSMS	HCT116MG_D190212_S1	1	500.8908386230469	2	501.316369	1000.61818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.141	1	18.141	17.641	18.641	0								0	0	0	0.8837	1	6218	6218		15.768	0	1				18107	8809	11148	11205	17390	17390					0.11790049676358194
LAYQSKKCR	9	Unmodified	_LAYQSKKCR_					0	0	0		tr|U7SQT9|U7SQT9_FUSNUNicotinatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01795PE=3SV=1	tr|U7SQT9|U7SQT9_FUSNUNicotinatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01795PE=3SV=1	tr|U7SQT9|U7SQT9_FUSNUNicotinatephosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01795PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	366.2024841308594	3	366.202576	1095.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.538	1	27.349	26.849	27.849	-0.18847								0	0	0	0.76875	1	9928	9928		5.2969	0.39987	1				18108	18394	11149	11206	17391	17391					0.041928942110416756
LAYSWFFAL	9	Unmodified	_LAYSWFFAL_					0	0	0			REV__ENST00000302609.7_1_10:38260649-38265560:-|nuORF	REV__ENST00000302609.7_1_10:38260649-38265560:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	372.86090087890625	3	373.195416	1116.56442	-0.099263	-3.7044E-05	0.13928	5.1978E-05	0.040017	1.4934E-05	373.1956086676705	25.157	0.20855	24.782	24.66	24.868	-0.37521					6	3	2	0	0	0	0.24195	1	9077	9077		8.1555	0.54658	1	7114900	+		18109	14799	11150	11207	17392	17392					0.010798324540019166
LAYYEAAVR	9	Unmodified	_LAYYEAAVR_					0	0	0		ENSG00000166133|ENST00000315616|RPUSD2	ENSG00000166133|ENST00000315616|RPUSD2	ENSG00000166133|ENST00000315616|RPUSD2	MSMS	HCT116MG_D190212_S1	1	528.2776489257812	2	528.279649	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.702	1	25.702	25.202	26.202	0								0	0	0	0.32965	1	9256	9256		37.974	0	1				18110	4820	11151	11208	17393	17393					0.019654564432130428
LCAGRVPA	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))AGRVPA_	LC(1)AGRVPA		LC(64)AGRVPA		0	1	0		EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	422.2290344238281	2	422.228905	842.443257	0.17493	7.3862E-05	-0.031162	-1.3157E-05	0.14377	6.0705E-05	422.228829023114	25.165	0.31228	24.79	24.608	24.92	-0.37521					8	5	2	0	0	0	0.25164	1	9054	9054		63.563	7.0216	1	24373000			18111	2869	11152	11209	17394	17394	12				0.015733065396716484
LCCMIFLLCII	11	Unmodified	_LCCMIFLLCII_					0	0	0		SLC44A5|p.P300Lfs*12|1|0.06|ENSG00000137968|chr1:75227814-75227815|-/TTGGTATAAC|frameshift_variant;SLC44A5|p.H411Ifs*58|1|0.35|ENSG00000137968|chr1:75219293-75219293|C/-|frameshift_variant;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	SLC44A5|p.P300Lfs*12|1|0.06|ENSG00000137968|chr1:75227814-75227815|-/TTGGTATAAC|frameshift_variant	SLC44A5|p.P300Lfs*12|1|0.06|ENSG00000137968|chr1:75227814-75227815|-/TTGGTATAAC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	429.088623046875	3	428.891077	1283.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0552	1	2.0552	1.5552	2.5552	0								0	0	0	0.96208	1	610	610		0	0	1				18112	3521	11153	11210	17395	17395					0.020920880259154728
LCCMIFLLCII	11	Unmodified	_LCCMIFLLCII_					0	0	0		SLC44A5|p.P300Lfs*12|1|0.06|ENSG00000137968|chr1:75227814-75227815|-/TTGGTATAAC|frameshift_variant;SLC44A5|p.H411Ifs*58|1|0.35|ENSG00000137968|chr1:75219293-75219293|C/-|frameshift_variant;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	SLC44A5|p.P300Lfs*12|1|0.06|ENSG00000137968|chr1:75227814-75227815|-/TTGGTATAAC|frameshift_variant	SLC44A5|p.P300Lfs*12|1|0.06|ENSG00000137968|chr1:75227814-75227815|-/TTGGTATAAC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	429.0886535644531	3	428.891077	1283.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5841	1	3.5841	3.0841	4.0841	0								0	0	0	0.96208	1	1070	1070		0	0	1				18113	3521	11153	11210	17396	17396					0.020920880259154728
LCCMIFLLCII	11	Unmodified	_LCCMIFLLCII_					0	0	0		SLC44A5|p.P300Lfs*12|1|0.06|ENSG00000137968|chr1:75227814-75227815|-/TTGGTATAAC|frameshift_variant;SLC44A5|p.H411Ifs*58|1|0.35|ENSG00000137968|chr1:75219293-75219293|C/-|frameshift_variant;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	SLC44A5|p.P300Lfs*12|1|0.06|ENSG00000137968|chr1:75227814-75227815|-/TTGGTATAAC|frameshift_variant	SLC44A5|p.P300Lfs*12|1|0.06|ENSG00000137968|chr1:75227814-75227815|-/TTGGTATAAC|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.891077	1283.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0276	1	1.0885	0.58854	1.5885	0.060905								0	0	0	0.96208	1	318	318		0	0	1				18114	3521	11153	11210	17397	17397					0.020920880259154728
LCEGTESPYQ	10	Unmodified	_LCEGTESPYQ_					0	0	0		PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant;PTPRK|p.N914Tfs*7|1|0.12|ENSG00000152894|chr6:127996924-127996924|T/-|frameshift_variant;PTPRK|p.D908Ifs*13|1|0.39|ENSG00000152894|chr6:127996944-127996944|T/-|frameshift_variant;PTPRK|p.Y1034Tfs*61|1|0.4|ENSG00000152894|chr6:127985870-127985870|C/-|frameshift_variant;PTPRK|p.L1219*|2|0.16|ENSG00000152894|chr6:127981168-127981168|A/-|frameshift_variant;nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK	PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant	PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2413330078125	2	563.739696	1125.46484	0.41762	0.00023543	0.31586	0.00017806	0.73348	0.00041349	563.7397617390449	29.05	0.46044	28.733	28.555	29.015	-0.31613					17	8	4	0	0	0	0.82332	1	10697	10697		10.074	0.6908	1	109950000			18115	9793	11154	11211	17398	17398					-0.0928739801292977
LCFEGFSAIDP	11	Unmodified	_LCFEGFSAIDP_					0	0	0			REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MSMS	HCT116MG_D190212_S2	2	599.7291259765625	2	599.776082	1197.53761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.25	1	25.888	25.388	26.388	-0.36164								0	0	0	0.88801	1	9489	9489		21.537	2.28	1		+		18116	12604	11155	11212	17399	17399					-0.0532564421951065
LCGAPKRC	8	Unmodified	_LCGAPKRC_					0	0	0			REV__ENST00000374023.7_2_6:34555138-34555300:-|nuORF	REV__ENST00000374023.7_2_6:34555138-34555300:-|nuORF	MSMS	HCT116MG_D190212_S3	3	424.218017578125	2	424.217483	846.420413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.977	1	55.69	55.19	56.19	-0.28773								0	0	0	0.8837	1	21241	21241		0.79363	0	1		+		18117	15201	11156	11213	17400	17400					-0.00894035849444208
LCGNYDGNSD	10	Unmodified	_LCGNYDGNSD_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN;ZAN|p.I1593Sfs*12|1|0.22|ENSG00000146839|chr7:100767168-100767168|G/-|frameshift_variant;ZAN|p.C2312Lfs*43|1|0.24|ENSG00000146839|chr7:100786096-100786097|-/TG|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ZAN|p.G2740Efs*38|1|0.09|ENSG00000146839|chr7:100795285-100795285|G/-|frameshift_variant;ZAN|p.E2695Rfs*83|1|0.15|ENSG00000146839|chr7:100794212-100794212|G/-|frameshift_variant;ENSG00000146839|ENST00000613979|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MSMS	HCT116MG_D190212_S1	1	353.1342468261719	3	353.134556	1056.38184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.211	1	35.211	34.711	35.711	0								0	0	0	0.95511	1	13090	13090		3.5871	1.0886	1				18118	9495	11157	11214	17401	17401					-0.1440971474091839
LCKMASLVWHP	11	Unmodified	_LCKMASLVWHP_					0	0	0			REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	MSMS	HCT116MG_D190212_S2	2	429.0886535644531	3	428.891233	1283.65187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.357	1	13.053	12.553	13.553	-0.30453								0	0	0	0.9619	1	4368	4368		0.094841	0	1		+		18119	10560	11158	11215	17402	17402					0.021389670615917566
LCNSAQQRGKE	11	Unmodified	_LCNSAQQRGKE_					0	0	0		MTMR2|p.E525A|1|0.08|ENSG00000087053|chr11:95838113-95838113|T/G|missense_variant	MTMR2|p.E525A|1|0.08|ENSG00000087053|chr11:95838113-95838113|T/G|missense_variant	MTMR2|p.E525A|1|0.08|ENSG00000087053|chr11:95838113-95838113|T/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	617.30126953125	2	617.303861	1232.59317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.827	1	57.827	57.327	58.327	0								0	0	0	0.95343	1	22260	22260		4.5289	0.93237	1				18120	9346	11159	11216	17403	17403					-0.013824179791981805
LCPGAYTVTI	10	Unmodified	_LCPGAYTVTI_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.G2237Efs*109|1|0.28|ENSG00000196924|chrX:154352240-154352240|C/-|frameshift_variant;FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.2508544921875	2	519.270435	1036.52632	0.50637	0.00026295	2.6098	0.0013552	3.1162	0.0016182	519.2714345627685	47.151	0.20772	47.029	46.922	47.13	-0.12175					5	3	2	0	0	0	0.23296	1	17989	17989		39.957	5.8549	1	13072000			18121	6105	11160	11217	17404	17404					0.009515784770428581
LCSAARMP	8	Unmodified	_LCSAARMP_					0	0	0		ENST00000421990.6_3_17:41131402-41131642:-|nuORF	ENST00000421990.6_3_17:41131402-41131642:-|nuORF	ENST00000421990.6_3_17:41131402-41131642:-|nuORF	MSMS	HCT116MG_D190212_S2	2	424.7093505859375	2	424.709491	847.404429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.299	1	25.937	25.437	26.437	-0.36164								0	0	0	0.8837	1	9509	9509		12.532	1.4171	1				18122	7791	11161	11218	17405	17405					-0.02537742086349226
LCSVSRGELK	10	Unmodified	_LCSVSRGELK_					0	0	0			REV__MAST4|p.G1923Qfs*4|1|0.33|ENSG00000069020|chr5:67164945-67164946|GG/-|frameshift_variant	REV__MAST4|p.G1923Qfs*4|1|0.33|ENSG00000069020|chr5:67164945-67164946|GG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2955932617188	2	546.297516	1090.58048	0.4612	0.00025195	-3.0562	-0.0016696	-2.5949	-0.0014176	546.2957349378983	31.212	0.25725	30.842	30.662	30.919	-0.37026					6	4	2	0	0	0	0.78097	1	11344	11344		13.615	1.3742	1	2146600	+		18123	10742	11162	11219	17406	17406					0.038811706285969194
LCTSSPGY	8	Unmodified	_LCTSSPGY_					0	0	0		ENST00000267085.8_2_12:53553686-53554577:-|nuORF	ENST00000267085.8_2_12:53553686-53554577:-|nuORF	ENST00000267085.8_2_12:53553686-53554577:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	827.3621826171875	1	827.360381	826.353105	0.77868	0.00064425	0.80461	0.0006657	1.5833	0.00131	827.3609842517992	50.285	0.25745	50.113	49.934	50.191	-0.1719					6	4	2	0	0	0	0.71835	1	19287	19287		20.871	5.103	1	18278000			18124	6907	11163	11220	17407	17407					-0.06701787579402207
LCTVATLR	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))TVATLR_	LC(1)TVATLR		LC(100)TVATLR		0	1	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	467.262939453125	2	467.262945	932.511337	0.080224	3.7486E-05	0.2074	9.6912E-05	0.28763	0.0001344	467.26302892925935	32.092	0.36503	32.092	31.805	32.17	0					11	6	2	0	0	0	0.068362	1	11790	11790		103.75	22.135	1	17458000		+	18125	554	11164	11221	17408	17408	2				0.042381313996770587
LCTVATLR	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))TVATLR_	LC(1)TVATLR		LC(92)TVATLR		0	1	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S2	2	467.2625427246094	2	467.262945	932.511337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.442	1	32.212	31.712	32.712	-0.23009								0	0	0	0.051955	1	12004	12004		92.491	21.358	1			+	18126	554	11164	11221	17409	17409	2				0.042381313996770587
LCTVATLR	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))TVATLR_	LC(1)TVATLR		LC(130)TVATLR		0	1	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	467.2629699707031	2	467.262945	932.511337	0.22109	0.00010331	-0.21954	-0.00010258	0.001547	7.2286E-07	467.26277214552533	32.389	0.46871	32.111	31.786	32.254	-0.2784					14	8	2	0	0	0	0.045718	1	11866	11866		128.37	35.543	1	11526000		+	18127	554	11164	11221	17410	17410	2				0.042381313996770587
LCTVATLR	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))TVATLR_	LC(1)TVATLR		LC(140)TVATLR		0	1	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	467.2628479003906	2	467.262945	932.511337	-0.060474	-2.8257E-05	0.29856	0.00013951	0.23809	0.00011125	467.2629227382927	32.562	0.4671	32.183	31.845	32.312	-0.37924					15	8	3	0	0	0	0.033555	1	11866	11866		141.83	49.004	1	12619000		+	18128	554	11164	11221	17411	17411	2				0.042381313996770587
LCTYALQFY	9	Unmodified	_LCTYALQFY_					0	0	0		nc|ENSG00000186335|Q495M3-3|SLC36A2;nc|ENSG00000186335|Q495M3-2|SLC36A2;ENSG00000186335|ENST00000335244|SLC36A2	nc|ENSG00000186335|Q495M3-3|SLC36A2	nc|ENSG00000186335|Q495M3-3|SLC36A2	MULTI-MSMS	HCT116MG_D190212_S3	3	561.772216796875	2	561.270435	1120.52632	0.25534	0.00014332	0.17811	9.9967E-05	0.43345	0.00024328	561.7719218477542	20.654	0.26023	20.688	20.506	20.766	0.034473					7	4	2	0	0	0	0.53593	1	7185	7185		14.838	0	1	3112600			18129	5879	11165	11222	17412	17412					-0.029124215229785477
LCVFKVLHRKQ	11	Unmodified	_LCVFKVLHRKQ_					0	0	0			REV__ENSG00000163464|ENST00000295683|CXCR1	REV__ENSG00000163464|ENST00000295683|CXCR1	MULTI-MSMS	HCT116MG_D190212_S2	2	457.6086120605469	3	457.607825	1369.80165	0.33551	0.00015353	0.78341	0.00035849	1.1189	0.00051203	457.60809885483843	52.159	0.82461	51.972	51.574	52.399	-0.18726					26	15	2	0	0	0	0.74191	1	20034	20034		1.2148	1.2148	1	14008000	+		18130	12923	11166	11223	17413	17413					0.13153655395717578
LCVFKVLHRKQ	11	Unmodified	_LCVFKVLHRKQ_					0	0	0			REV__ENSG00000163464|ENST00000295683|CXCR1	REV__ENSG00000163464|ENST00000295683|CXCR1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	457.607825	1369.80165	0.042309	1.9361E-05	0.60269	0.0002758	0.645	0.00029516	457.60805932527006	51.765	0.36636	51.765	51.549	51.916	0	-0.10314	-0.00018514	NaN	1.2148	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39121000	+		18131	12923	11166	11223							0.13153655395717578
LCWLLLGTL	9	Unmodified	_LCWLLLGTL_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MSMS	HCT116MG_D190212_S1	1	516.3014526367188	2	516.301539	1030.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.869	1	44.869	44.369	45.369	0								0	0	0	0.76781	1	16985	16985		8.5933	0	1				18132	3243	11167	11224	17414	17414					0.0744534961604586
LDAPLARLGRR	11	Unmodified	_LDAPLARLGRR_					0	0	0			REV__ENST00000554492.5_1_14:100842995-100934470:+|nuORF	REV__ENST00000554492.5_1_14:100842995-100934470:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	619.3775024414062	2	619.37802	1236.74149	0.581	0.00035986	-0.80731	-0.00050003	-0.22631	-0.00014017	619.3768435225882	55.133	0.52145	54.816	54.51	55.032	-0.31774					21	9	3	0	0	0	0.74191	1	20623	20623		4.897	0.36815	1	8511600	+		18133	16448	11168	11225	17415	17415					0.1325868105684549
LDARRKRRSFS	11	Unmodified	_LDARRKRRSFS_					0	0	0		PBX3|p.N241S|1|0.11|ENSG00000167081|chr9:125935486-125935486|A/G|missense_variant	PBX3|p.N241S|1|0.11|ENSG00000167081|chr9:125935486-125935486|A/G|missense_variant	PBX3|p.N241S|1|0.11|ENSG00000167081|chr9:125935486-125935486|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	696.401611328125	2	696.402558	1390.79056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.314	1	40.937	40.437	41.437	-0.37732								0	0	0	0.95636	1	15189	15189		2.9952	1.3426	1				18134	9728	11169	11226	17416	17416					0.11079969345769314
LDARSGEHPP	10	Unmodified	_LDARSGEHPP_					0	0	0			REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-MSMS	HCT116MG_D190212_S1	1	540.3346557617188	2	539.767437	1077.52032	0.55151	0.00029768	-0.25433	-0.00013728	0.29717	0.0001604	539.7672941357274	16.742	1.1988	16.742	16.421	17.62	0					38	22	2	0	0	0	0.60826	1	5904	5904		27.629	0	1	4720000	+		18135	12525	11170	11227	17417	17417					-0.015338037102765156
LDCHLLPV	8	Unmodified	_LDCHLLPV_					0	0	0			REV__RNASE3|p.F103L|1|0.2|ENSG00000169397|chr14:20891995-20891995|C/A|missense_variant	REV__RNASE3|p.F103L|1|0.2|ENSG00000169397|chr14:20891995-20891995|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	455.24884033203125	2	455.246763	908.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.334	1	39.032	38.532	39.532	-0.30137								0	0	0	0.8837	1	14598	14598		5.7604	0.52976	1		+		18136	13242	11171	11228	17418	17418					0.021073439966926344
LDCTFHLSGP	10	Unmodified	_LDCTFHLSGP_					0	0	0			REV__nc|ENSG00000229086|A6NM66|LINC01548	REV__nc|ENSG00000229086|A6NM66|LINC01548	MSMS	HCT116MG_D190212_S3	3	545.2567749023438	2	545.255317	1088.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.1	1	24.994	24.494	25.494	-0.10618								0	0	0	0.86471	1	8945	8945		20.454	0.039092	1		+		18137	17300	11172	11229	17419	17419					-0.04462780188191573
LDDCTVLVFGE	11	Unmodified	_LDDCTVLVFGE_					0	0	0			REV__ENSG00000258436|ENST00000696784|RNASE12	REV__ENSG00000258436|ENST00000696784|RNASE12	MULTI-SECPEP	HCT116MG_D190212_S4	4	605.2909545898438	2	605.786647	1209.55874	1.244	0.00075363	1.5531	0.00094085	2.7972	0.0016945	606.2881725891051	24.897	0.98685	24.628	24.134	25.121	-0.26881					28	18	2	0	0	0	0.35748	1	8658	8658		0.96228	0	1	7485000	+		18138	14408	11173	11230	17420	17420					-0.03765678910644965
LDDKNILL	8	Unmodified	_LDDKNILL_					0	0	0		tr|U7SZX3|U7SZX3_FUSNUnicotinate-nucleotidediphosphorylase(carboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00734PE=3SV=1	tr|U7SZX3|U7SZX3_FUSNUnicotinate-nucleotidediphosphorylase(carboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00734PE=3SV=1	tr|U7SZX3|U7SZX3_FUSNUnicotinate-nucleotidediphosphorylase(carboxylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00734PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	472.27545166015625	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.522	1	57.228	56.728	57.728	-0.29465								0	0	0	0.8837	1	21594	21594		5.2307	0	1				18139	18539	11174	11231	17421	17421					0.06502938211713172
LDDKYFKEWHK	11	Unmodified	_LDDKYFKEWHK_					0	0	0		ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MSMS	HCT116MG_D190212_S1	1	754.8775634765625	2	754.880259	1507.74596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.365	1	44.365	43.865	44.865	0								0	0	0	0.95273	1	16783	16783		4.897	2.3985	1				18140	1914	11175	11232	17422	17422					0.012401006890740973
LDDVPTADIP	10	Unmodified	_LDDVPTADIP_					0	0	0			REV__ENST00000495088.1_1_3:72821852-72822317:+|nuORF	REV__ENST00000495088.1_1_3:72821852-72822317:+|nuORF	MSMS	HCT116MG_D190212_S1	1	528.2635498046875	2	528.266404	1054.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.807	1	38.807	38.307	39.307	0								0	0	0	0.90475	1	14540	14540		14.838	1.7958	1		+		18141	16081	11176	11233	17423	17423					-0.006822772387749865
LDDYNYFY	8	Unmodified	_LDDYNYFY_					0	0	0		ENST00000303406.4_3_12:54410833-54411064:+|nuORF	ENST00000303406.4_3_12:54410833-54411064:+|nuORF	ENST00000303406.4_3_12:54410833-54411064:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	556.2428588867188	2	556.732197	1111.44984	0.42221	0.00023506	-0.40268	-0.00022419	0.019532	1.0874E-05	556.7318520377935	22.875	0.36437	22.875	22.637	23.001	0					14	6	3	0	0	0	0.84759	1	8031	8031		5.7604	0.028577	1	36320000			18142	7015	11177	11234	17424	17424					-0.10142521818625028
LDEALLTY	8	Unmodified	_LDEALLTY_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-MSMS	HCT116MG_D190212_S2	2	937.4884643554688	1	937.48769	936.480414	0.84285	0.00079016	1.0811	0.0010135	1.924	0.0018037	937.4890044738877	52.045	0.51648	51.861	51.68	52.197	-0.18369					18	9	3	0	0	0	0.15838	1	19966	19966		81.864	7.4677	1	66607000			18143	6285	11178	11235	17425	17425					0.009632565664219328
LDEDTEPTA	9	Unmodified	_LDEDTEPTA_					0	0	0			REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF	REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	495.755615234375	2	495.716744	989.418936	0.31936	0.00015831	-0.68993	-0.00034201	-0.37057	-0.0001837	495.7163919944262	19.298	0.46932	18.929	18.575	19.044	-0.3695					12	8	2	0	0	0	0.26328	1	6720	6720		7.9102	0	1	4495900	+		18144	12829	11179	11236	17426	17426					-0.07619719923513912
LDEDTEPTA	9	Unmodified	_LDEDTEPTA_					0	0	0			REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF	REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	495.716744	989.418936	0.29088	0.00014419	-0.90256	-0.00044742	-0.61169	-0.00030322	495.7162760295429	18.807	0.46786	18.626	18.304	18.771	-0.18051	-0.077437	-0.00014024	NaN	4.3292	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2989600	+		18145	12829	11179	11236							-0.07619719923513912
LDEHLMEFK	9	Unmodified	_LDEHLMEFK_					0	0	0		HERC1|p.Q4578E|1|0.39|ENSG00000103657|chr15:63616639-63616639|G/C|missense_variant	HERC1|p.Q4578E|1|0.39|ENSG00000103657|chr15:63616639-63616639|G/C|missense_variant	HERC1|p.Q4578E|1|0.39|ENSG00000103657|chr15:63616639-63616639|G/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	581.2841796875	2	581.284074	1160.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.749	1	52.749	52.249	53.249	0								0	0	0	0.76603	1	20184	20184		14.838	4.6549	1				18146	9213	11180	11237	17427	17427					-0.020259379826029544
LDEHRTRLRWR	11	Unmodified	_LDEHRTRLRWR_					0	0	0		nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1;PLCH1|p.L1123Qfs*10|1|0.11|ENSG00000114805|chr3:155482680-155482683|ACAA/-|frameshift_variant;PLCH1|p.Q1461Sfs*24|1|0.37|ENSG00000114805|chr3:155481669-155481669|G/-|frameshift_variant;nc|ENSG00000114805|Q4KWH8-2|PLCH1;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1	nc|ENSG00000114805|Q4KWH8-3|PLCH1	nc|ENSG00000114805|Q4KWH8-3|PLCH1	MULTI-SECPEP	HCT116MG_D190212_S1	1	512.9854125976562	3	513.286802	1536.83858	0.39719	0.00020387	-0.74116	-0.00038043	-0.34397	-0.00017656	513.2864027274737	52.327	0.36032	52.327	52.125	52.485	0					9	6	2	0	0	0	0.3662	1	20007	20007		0.40827	0	1	8875500			18147	2434	11181	11238	17428	17428					0.09163043265812121
LDEKSLEKW	9	Unmodified	_LDEKSLEKW_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MSMS	HCT116MG_D190212_S2	2	574.5503540039062	2	574.303321	1146.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.454	1	40.384	39.884	40.884	-0.069626								0	0	0	0.62451	1	15256	15256		22.736	0	1		+		18148	13511	11182	11239	17429	17429					0.024656909235773128
LDEKYVQRD	9	Unmodified	_LDEKYVQRD_					0	0	0			REV__EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant	REV__EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	389.1982421875	3	389.199777	1164.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.06	1	22.674	22.174	23.174	-0.3852								0	0	0	0.73401	1	8200	8200		17.443	3.0373	1		+		18149	10454	11183	11240	17430	17430					0.001796187754280254
LDELEQLLATE	11	Unmodified	_LDELEQLLATE_					0	0	0			REV__nc|ENSG00000144895|Q9BY44-2|EIF2A	REV__nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-MSMS	HCT116MG_D190212_S4	4	637.3303833007812	2	637.329733	1272.64491	0.45538	0.00029022	1.082	0.00068956	1.5373	0.00097979	637.8320018583969	32.614	0.46725	32.234	32.053	32.52	-0.37924					12	8	2	0	0	0	0.43821	1	11987	11987		51.63	7.8574	1	2277300	+		18150	12435	11184	11241	17431	17431					0.019496041957154375
LDELEQLLATE	11	Unmodified	_LDELEQLLATE_					0	0	0			REV__nc|ENSG00000144895|Q9BY44-2|EIF2A	REV__nc|ENSG00000144895|Q9BY44-2|EIF2A	MULTI-SECPEP	HCT116MG_D190212_S4	4	637.317138671875	2	637.329733	1272.64491	0.45538	0.00029022	1.082	0.00068956	1.5373	0.00097979	637.8320018583969	32.614	0.46725	32.234	32.053	32.52	-0.37924					12	8	2	0	0	0	0.27685	1	11993	11993		43.772	7.2662	1	2277300	+		18151	12435	11184	11241	17432	17432					0.019496041957154375
LDELRDEGK	9	Unmodified	_LDELRDEGK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S1	1	537.7750854492188	2	537.774928	1073.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.171	1	21.171	20.671	21.671	0								0	0	0	0.01348	1	7435	7435		101.54	33.705	1			+	18152	554	11185	11242	17433	17433					0.001476433670404731
LDELRDEGK	9	Unmodified	_LDELRDEGK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S3	3	358.85235595703125	3	358.852377	1073.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.026	1	21.06	20.56	21.56	0.034473								0	0	0	0.37224	1	7305	7305		27.088	3.2873	1			+	18153	554	11185	11242	17434	17434					0.001476433670404731
LDELRDEGK	9	Unmodified	_LDELRDEGK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S4	4	537.7752685546875	2	537.774928	1073.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.324	1	21.111	20.611	21.611	-0.21244								0	0	0	4.8442E-05	1	7354	7354		143.21	56.881	1			+	18154	554	11185	11242	17435	17435					0.001476433670404731
LDEMPMTLPQ	10	Unmodified	_LDEMPMTLPQ_					0	0	0		MPRIP|p.T91M|1|0.58|ENSG00000133030|chr17:17126706-17126706|C/T|missense_variant	MPRIP|p.T91M|1|0.58|ENSG00000133030|chr17:17126706-17126706|C/T|missense_variant	MPRIP|p.T91M|1|0.58|ENSG00000133030|chr17:17126706-17126706|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	587.1934814453125	2	587.777767	1173.54098	0.63263	0.00037184	0.33474	0.00019675	0.96737	0.0005686	587.7779213655502	26.181	1.1983	26.048	25.594	26.792	-0.13261					36	22	3	0	0	0	0.30895	1	9323	9323		0.30703	0.30703	1	8926400			18155	9339	11186	11243	17436	17436					-0.038847174371312576
LDEMVETRPD	10	Unmodified	_LDEMVETRPD_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MSMS	HCT116MG_D190212_S2	2	602.318359375	2	602.779353	1203.54415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.04	1	51.856	51.356	52.356	-0.18369								0	0	0	0.82952	1	19982	19982		24.991	12.75	1		+		18156	12835	11187	11244	17437	17437					-0.04947751058784888
LDENLGEEHKM	11	Unmodified	_LDENLGEEHKM_					0	0	0			REV__SNRK|p.L115_A116insSITFT|1|0.16|ENSG00000163788|chr3:43303548-43303549|-/TCAATAACTTTTACT|inframe_insertion	REV__SNRK|p.L115_A116insSITFT|1|0.16|ENSG00000163788|chr3:43303548-43303549|-/TCAATAACTTTTACT|inframe_insertion	MSMS	HCT116MG_D190212_S2	2	657.8053588867188	2	657.803359	1313.59217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.32	1	47.198	46.698	47.698	-0.12175								0	0	0	0.84073	1	18048	18048		27.629	2.6378	1		+		18157	12948	11188	11245	17438	17438					-0.05208677138762141
LDFCDSCSDC	10	Unmodified	_LDFCDSCSDC_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MSMS	HCT116MG_D190212_S3	3	554.1754150390625	2	554.175017	1106.33548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.075	1	13.144	12.644	13.644	0.069158								0	0	0	0.96911	1	4124	4124		0.45834	0.45834	1				18158	987	11189	11246	17439	17439					-0.21343238958866095
LDFIHTCE	8	Unmodified	_LDFIHTCE_					0	0	0		ENST00000466359.1_1_9:33319028-33332553:+|nuORF;nc|ENSG00000086102|Q12986-3|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;ENSG00000086102|ENST00000379540|NFX1	ENST00000466359.1_1_9:33319028-33332553:+|nuORF	ENST00000466359.1_1_9:33319028-33332553:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	489.22320556640625	2	489.223485	976.432418	0.21205	0.00010374	0.21923	0.00010725	0.43128	0.00021099	489.2235136193828	33.668	0.63702	33.284	33.088	33.725	-0.38426					27	12	4	0	0	0	0.79834	1	12405	12405		11.64	3.047	1	65634000			18159	1465	11190	11247	17440	17440					-0.0567414062526268
LDFIRRRKLR	10	Unmodified	_LDFIRRRKLR_					0	0	0		ARHGAP36|p.N455K|1|0.34|ENSG00000147256|chrX:131086412-131086412|C/G|missense_variant	ARHGAP36|p.N455K|1|0.34|ENSG00000147256|chrX:131086412-131086412|C/G|missense_variant	ARHGAP36|p.N455K|1|0.34|ENSG00000147256|chrX:131086412-131086412|C/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	687.1199951171875	2	686.936037	1371.85752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.854	1	37.761	37.261	38.261	-0.09301								0	0	0	0.96453	1	14203	14203		1.4819	0.15237	1				18160	176	11191	11248	17441	17441					0.18646624627535857
LDFKSEGSSQS	11	Unmodified	_LDFKSEGSSQS_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MSMS	HCT116MG_D190212_S2	2	592.7734985351562	2	592.775125	1183.5357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.951	1	42.881	42.381	43.381	-0.069984								0	0	0	0.91979	1	16271	16271		17.443	0.32975	1				18161	4784	11192	11249	17442	17442					-0.04872981703738333
LDFLGIKSRPN	11	Unmodified	_LDFLGIKSRPN_					0	0	0			REV__nc|ENSG00000054793|O75110-2|ATP9A	REV__nc|ENSG00000054793|O75110-2|ATP9A	MSMS	HCT116MG_D190212_S1	1	630.3598022460938	2	630.358962	1258.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.133	1	39.133	38.633	39.633	0								0	0	0	0.9465	1	14672	14672		8.1555	1.4324	1		+		18162	10637	11193	11250	17443	17443					0.08436750351529554
LDFQEFTLY	9	Unmodified	_LDFQEFTLY_					0	0	0		nc|ENSG00000157036|Q9Y2C4-3|EXOG;nc|ENSG00000157036|Q9Y2C4-4|EXOG;ENSG00000157036|ENST00000287675|EXOG	nc|ENSG00000157036|Q9Y2C4-3|EXOG	nc|ENSG00000157036|Q9Y2C4-3|EXOG	MSMS	HCT116MG_D190212_S2	2	588.1265258789062	2	588.284597	1174.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.447	1	35.305	34.805	35.805	-0.14245								0	0	0	0.768	1	13223	13223		7.9102	1.187	1				18163	4310	11194	11251	17444	17444					-0.025654003420413574
LDGARWLHLVP	11	Unmodified	_LDGARWLHLVP_					0	0	0			REV__ENST00000546226.5_1_11:118963098-118963308:+|nuORF	REV__ENST00000546226.5_1_11:118963098-118963308:+|nuORF	MSMS	HCT116MG_D190212_S3	3	638.8635864257812	2	638.861672	1275.70879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.567	1	48.251	47.751	48.751	-0.31596								0	0	0	0.95023	1	18270	18270		6.2058	0	1		+		18164	16401	11195	11252	17445	17445					0.08196473933980997
LDGDPGAGP	9	Unmodified	_LDGDPGAGP_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MSMS	HCT116MG_D190212_S3	3	399.6848449707031	2	399.68505	797.355547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.473	1	19.533	19.033	20.033	0.05983								0	0	0	0.58443	1	6679	6679		24.674	0	1				18165	4808	11196	11253	17446	17446					-0.051236158500842066
LDGDPGAGP	9	Unmodified	_LDGDPGAGP_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MSMS	HCT116MG_D190212_S4	4	399.68499755859375	2	399.68505	797.355547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.685	1	19.491	18.991	19.991	-0.19367								0	0	0	0.43047	1	6692	6692		32.117	11.246	1				18166	4808	11196	11253	17447	17447					-0.051236158500842066
LDGEESYGKY	10	Unmodified	_LDGEESYGKY_					0	0	0		ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	MULTI-MSMS	HCT116MG_D190212_S2	2	580.7598876953125	2	580.758943	1159.50333	0.66023	0.00038343	0.37209	0.00021609	1.0323	0.00059952	580.7592067416235	33.701	0.36405	33.508	33.327	33.691	-0.19297					10	6	2	0	0	0	0.82332	1	12567	12567		10.074	0.6908	1	36079000			18167	5444	11197	11254	17448	17448					-0.07003769106745494
LDGERPHADPV	11	Unmodified	_LDGERPHADPV_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MSMS	HCT116MG_D190212_S4	4	603.3006591796875	2	603.299101	1204.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.351	1	28.019	27.519	28.519	-0.33138								0	0	0	0.91433	1	10191	10191		18.146	4.2403	1		+		18168	10116	11198	11255	17449	17449					-0.010458629930781171
LDGGGGLK	8	Unmodified	_LDGGGGLK_					0	0	0			REV__ENSG00000253304|ENST00000521452|TMEM200B	REV__ENSG00000253304|ENST00000521452|TMEM200B	MULTI-MSMS	HCT116MG_D190212_S2	2	359.2009582519531	2	358.700503	715.386454	-0.16881	-6.0551E-05	0.18784	6.7377E-05	0.019031	6.8263E-06	358.7005063223971	26.372	0.31032	26.01	25.87	26.18	-0.36164					9	5	3	0	0	0	0.74206	1	9507	9507		18.135	0	1	16140000	+		18169	14387	11199	11256	17450	17450					0.017375822548046926
LDGGNTEIQK	10	Unmodified	_LDGGNTEIQK_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	538.77490234375	2	537.774928	1073.5353	0.30875	0.00016604	-1.7541	-0.00094333	-1.4454	-0.0007773	537.7747350901204	20.986	0.36437	21.02	20.766	21.131	0.034473					12	6	3	0	0	0	0.71349	1	7292	7292		19.257	3.1079	1	8385100			18170	1619	11200	11257	17451	17451					0.001476433670404731
LDGGRPPP	8	Unmodified	_LDGGRPPP_					0	0	0			REV__nc|ENSG00000165119|P61978-3|HNRNPK	REV__nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	HCT116MG_D190212_S2	2	404.7190246582031	2	404.719227	807.423902	-0.53242	-0.00021548	0.42891	0.00017359	-0.10351	-4.1894E-05	404.7192143578979	18.71	0.20734	18.346	18.217	18.425	-0.36325					5	3	2	0	0	0	0.66231	1	6456	6456		26.884	3.7352	1	12198000	+		18171	13034	11201	11258	17452	17452					0.012486735204220167
LDGGSRGISPV	11	Unmodified	_LDGGSRGISPV_					0	0	0			REV__ENST00000003100.12_1_7:91763596-91763764:-|nuORF	REV__ENST00000003100.12_1_7:91763596-91763764:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	529.7879028320312	2	529.285463	1056.55637	0.65506	0.00034671	0.74324	0.00039339	1.3983	0.0007401	529.2858833888237	33.207	0.163	32.824	32.726	32.889	-0.38223					31	21	2	0	0	0	0.6977	1	12102	12102		22.658	1.1211	1	25811000	+		18172	14483	11202	11259	17453	17453					0.030356534665770596
LDGHLQLYL	9	Unmodified	_LDGHLQLYL_					0	0	0			REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	REV__ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.16552734375	2	536.295299	1070.57605	0.65076	0.000349	-0.19017	-0.00010199	0.46058	0.00024701	536.2952513684286	52.355	0.20599	52.168	52.038	52.244	-0.18725					5	3	2	0	0	0	0.21227	1	20079	20079		3.5965	0	1	13727000	+		18173	10589	11203	11260	17454	17454					0.043580294773164496
LDGKFPND	8	Unmodified	_LDGKFPND_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	HCT116MG_D190212_S4	4	453.22198486328125	2	453.2218	904.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.654	1	32.275	31.775	32.775	-0.37924								0	0	0	0.8837	1	11902	11902		12.532	0	1		+		18174	14214	11204	11261	17455	17455					-0.026990674076273535
LDGLAHLP	8	Unmodified	_LDGLAHLP_					0	0	0			REV__ENST00000554257.1_1_14:38368438-38371223:-|nuORF	REV__ENST00000554257.1_1_14:38368438-38371223:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	418.2369384765625	2	418.237253	834.459953	-0.1928	-8.0635E-05	-0.21053	-8.8051E-05	-0.40333	-0.00016869	418.23713959207765	37.579	0.30536	37.475	37.335	37.641	-0.10318					8	5	2	0	0	0	0.5791	1	14108	14108		34.187	5.1058	1	72771000	+		18175	16443	11205	11262	17456	17456					0.03610130697279601
LDGLEGAP	8	Unmodified	_LDGLEGAP_					0	0	0			REV__ENST00000597025.1_1_19:15567220-15568129:-|nuORF	REV__ENST00000597025.1_1_19:15567220-15568129:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	771.3878784179688	1	771.38831	770.381034	0.48482	0.00037399	-1.849	-0.0014263	-1.3642	-0.0010523	771.3881656423481	34.556	0.93591	34.259	33.764	34.7	-0.29707					24	17	2	0	0	0	0.13911	1	12711	12711		86.121	15.406	1	8749200	+		18176	16726	11206	11263	17457	17457					-0.01334141327663474
LDGLEGAP	8	Unmodified	_LDGLEGAP_					0	0	0			REV__ENST00000597025.1_1_19:15567220-15568129:-|nuORF	REV__ENST00000597025.1_1_19:15567220-15568129:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	771.38831	770.381034	0.48482	0.00037399	-1.849	-0.0014263	-1.3642	-0.0010523	771.3881656423481	34.556	0.93591	34.259	33.764	34.7	-0.29707	0.0068888	0.00032736	NaN	86.121	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8749200	+		18177	16726	11206	11263							-0.01334141327663474
LDGLGWRGAHP	11	Unmodified	_LDGLGWRGAHP_					0	0	0			REV__ENST00000515051.1_1_5:175956111-175956726:-|nuORF	REV__ENST00000515051.1_1_5:175956111-175956726:-|nuORF	MSMS	HCT116MG_D190212_S2	2	589.8089599609375	2	589.806897	1177.59924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.526	1	22.141	21.641	22.641	-0.3852								0	0	0	0.81249	1	7984	7984		31.268	10.815	1		+		18178	16204	11207	11264	17458	17458					0.017544683146752504
LDGMWWFQ	8	Unmodified	_LDGMWWFQ_					0	0	0			REV__ENST00000354293.9_1_19:50310018-50310102:+|nuORF	REV__ENST00000354293.9_1_19:50310018-50310102:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	541.2486572265625	2	541.741845	1081.46914	0.22234	0.00012045	-2.1583	-0.0011692	-1.9359	-0.0010488	541.7404107721995	17.825	0.46832	17.906	17.638	18.106	0.081358					10	8	2	0	0	0	0.31855	1	6082	6082		4.756	0	1	2165100	+		18179	15027	11208	11265	17459	17459					-0.06833844008701817
LDGNNFPYSR	10	Unmodified	_LDGNNFPYSR_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	HCT116MG_D190212_S3	3	591.2804565429688	2	591.780544	1181.54654	0.64809	0.00038353	0.14698	8.6978E-05	0.79507	0.00047051	591.7806591647394	42.422	0.31298	42.118	41.883	42.196	-0.30352					6	5	2	0	0	0	0.30526	1	15819	15819		10.074	3.8681	1	4554800	+		18180	13934	11209	11266	17460	17460					-0.03697534538810032
LDGPSHLRDP	10	Unmodified	_LDGPSHLRDP_					0	0	0			REV__ENST00000481221.6_1_3:9437193-9439148:-|nuORF	REV__ENST00000481221.6_1_3:9437193-9439148:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	553.2251586914062	2	553.783087	1105.55162	0.32122	0.00017788	-0.10201	-5.6492E-05	0.2192	0.00012139	553.7830429469633	21.318	0.99675	21.336	20.75	21.747	0.018446					46	18	3	0	0	0	0.26351	1	7410	7410		22.736	1.1993	1	19491000	+		18181	15953	11210	11267	17461	17461					0.0030676932381084043
LDGQEVCRY	9	Unmodified	_LDGQEVCRY_					0	0	0		ENST00000497493.1_1_21:38597341-38597419:-|nuORF	ENST00000497493.1_1_21:38597341-38597419:-|nuORF	ENST00000497493.1_1_21:38597341-38597419:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	541.309326171875	2	541.750398	1081.48624	0.35165	0.00019051	0.14142	7.6616E-05	0.49307	0.00026712	541.7505201877259	18.05	0.25994	18.127	18.049	18.309	0.076334					7	4	2	0	0	0	0.21227	1	6163	6163		15.847	4.2069	1	1894000			18182	8402	11211	11268	17462	17462					-0.05123968193561268
LDGQMSPLSV	10	Oxidation (M)	_LDGQM(Oxidation (M))SPLSV_		LDGQM(1)SPLSV		LDGQM(86)SPLSV	0	0	1			REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7589721679688	2	531.760432	1061.50631	0.54203	0.00028823	1.581	0.00084074	2.1231	0.001129	531.7586170255859	45.154	0.36588	45.061	44.839	45.205	-0.092472					13	6	3	0	0	0	0.051175	1	17136	17136		86.332	7.6038	1	17984000	+		18183	9899	11212	11269	17463	17463		147			-0.02198217253612711
LDGQRWIED	9	Unmodified	_LDGQRWIED_					0	0	0		ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	566.7756958007812	2	566.275095	1130.53564	0.38645	0.00021884	0.067896	3.8448E-05	0.45435	0.00025729	566.2752470299122	22.357	0.67514	22.13	21.676	22.351	-0.22777					23	12	2	0	0	0	0.31596	1	7681	7681		29.082	2.8134	1	5672700			18184	6209	11213	11270	17464	17464					-0.024409369130808045
LDHRLRQWYKL	11	Unmodified	_LDHRLRQWYKL_					0	0	0			REV__nc|ENSG00000100425|O95696|BRD1	REV__nc|ENSG00000100425|O95696|BRD1	MSMS	HCT116MG_D190212_S1	1	764.4322509765625	2	764.430784	1526.84702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.792	1	53.792	53.292	54.292	0								0	0	0	0.95954	1	20610	20610		1.3295	0	1		+		18185	11085	11214	11271	17465	17465					0.10466597182448822
LDHSMWFHAPF	11	Unmodified	_LDHSMWFHAPF_					0	0	0		ENST00000484975.5_1_20:44472013-44472349:-|nuORF;ENSG00000101473|ENST00000217455|ACOT8	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	MSMS	HCT116MG_D190212_S3	3	694.3164672851562	2	694.31624	1386.61793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.672	1	43.365	42.865	43.865	-0.30616								0	0	0	0.95581	1	16303	16303		3.2813	0	1				18186	1795	11215	11272	17466	17466					-0.05991738105785771
LDIGFGRGQE	10	Unmodified	_LDIGFGRGQE_					0	0	0		ENST00000508913.5_1_5:43043449-43044931:+|nuORF	ENST00000508913.5_1_5:43043449-43044931:+|nuORF	ENST00000508913.5_1_5:43043449-43044931:+|nuORF	MSMS	HCT116MG_D190212_S4	4	546.275146484375	2	546.277638	1090.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.149	1	26.838	26.338	27.338	-0.3114								0	0	0	0.89062	1	9705	9705		17.113	4.5813	1				18187	8484	11216	11273	17467	17467					-0.0009263305046260939
LDIGPAGP	8	Unmodified	_LDIGPAGP_					0	0	0		nc|ENSG00000205221|Q6UXI7-2|VIT;nc|ENSG00000205221|Q6UXI7-5|VIT;nc|ENSG00000205221|Q6UXI7|VIT;ENSG00000205221|ENST00000379242|VIT	nc|ENSG00000205221|Q6UXI7-2|VIT	nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-MSMS	HCT116MG_D190212_S2	2	739.399169921875	1	739.398481	738.391205	1.1344	0.00083879	-0.36367	-0.0002689	0.77075	0.00056989	739.3980271127887	47.278	0.4654	47.156	46.974	47.439	-0.12175					19	8	3	0	0	0	0.66848	1	18021	18021		26.341	3.8886	1	115610000			18188	6373	11217	11274	17468	17468					0.011544663975655567
LDIKKLVLVL	10	Unmodified	_LDIKKLVLVL_					0	0	0			REV__ENST00000462279.5_1_5:60188520-60189039:-|nuORF	REV__ENST00000462279.5_1_5:60188520-60189039:-|nuORF	MSMS	HCT116MG_D190212_S2	2	385.2695007324219	3	385.268804	1152.78458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.661	1	57.486	56.986	57.986	-0.17494								0	0	0	0.96804	1	22269	22269		0.69767	0	1		+		18189	15796	11218	11275	17469	17469					0.21430058061559976
LDIKLPPAVR	10	Unmodified	_LDIKLPPAVR_					0	0	0			REV__ENST00000272793.9_1_2:170814982-170843277:+|nuORF	REV__ENST00000272793.9_1_2:170814982-170843277:+|nuORF	MSMS	HCT116MG_D190212_S1	1	561.3535766601562	2	561.355691	1120.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.969	1	43.969	43.469	44.469	0								0	0	0	0.94551	1	16626	16626		5.7319	0.97584	1		+		18190	14702	11219	11276	17470	17470					0.14130857190775714
LDILPRLQKLP	11	Unmodified	_LDILPRLQKLP_					0	0	0		ENST00000452380.6_1_10:17194042-17210877:-|nuORF;ENSG00000107614|ENST00000377799|TRDMT1	ENST00000452380.6_1_10:17194042-17210877:-|nuORF	ENST00000452380.6_1_10:17194042-17210877:-|nuORF	MSMS	HCT116MG_D190212_S1	1	653.6837158203125	2	653.41628	1304.81801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.342	1	44.342	43.842	44.842	0								0	0	0	0.95581	1	16773	16773		3.2813	0.28607	1				18191	2121	11220	11277	17471	17471					0.1777905983344681
LDIRRIEHCIS	11	Unmodified	_LDIRRIEHCIS_					0	0	0			REV__LRP1B|p.R1267C|1|0.22|ENSG00000168702|chr2:140886303-140886303|G/A|missense_variant	REV__LRP1B|p.R1267C|1|0.22|ENSG00000168702|chr2:140886303-140886303|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	677.7714233398438	2	677.866628	1353.7187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.793	1	44.708	44.208	45.208	-0.084797								0	0	0	0.94538	1	17019	17019		8.7454	1.1365	1		+		18192	16983	11221	11278	17472	17472					0.05599293877094169
LDISLCVGLY	10	Unmodified	_LDISLCVGLY_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MSMS	HCT116MG_D190212_S4	4	547.99658203125	2	548.291368	1094.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.306	1	38.926	38.426	39.426	-0.38055								0	0	0	0.93854	1	14437	14437		7.2892	0	1				18193	2510	11222	11279	17473	17473					0.02468134165542324
LDKALQKRP	9	Unmodified	_LDKALQKRP_					0	0	0		ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant;ARHGAP20|p.K754Rfs*8|1|0.42|ENSG00000137727|chr11:110580685-110580685|T/-|frameshift_variant;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20	ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant	ARHGAP20|p.N289Qfs*34|1|0.38|ENSG00000137727|chr11:110606664-110606665|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	356.88824462890625	3	356.888986	1067.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.93	1	47.614	47.114	48.114	-0.31596								0	0	0	0.76954	1	18013	18013		2.4985	0	1				18194	173	11223	11280	17474	17474					0.11401113496890503
LDKFKDKFRR	10	Unmodified	_LDKFKDKFRR_					0	0	0		ENST00000483640.5_1_6:43466739-43470406:+|nuORF;nc|ENSG00000137221|Q5JTD0-4|TJAP1;nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1	ENST00000483640.5_1_6:43466739-43470406:+|nuORF	ENST00000483640.5_1_6:43466739-43470406:+|nuORF	MSMS	HCT116MG_D190212_S2	2	676.891357421875	2	676.893503	1351.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.49	1	50.318	49.818	50.818	-0.1719								0	0	0	0.94339	1	19351	19351		6.2058	0.9089	1				18195	3468	11224	11281	17475	17475					0.1106383437106615
LDKKVEKV	8	Unmodified	_LDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S1	1	479.8001403808594	2	479.800217	957.585882	0.17884	8.5807E-05	0.34553	0.00016578	0.52437	0.00025159	479.80020362358914	21.376	0.15827	21.376	21.279	21.437	0					4	2	2	0	0	0	0.048586	1	7534	7534		125.04	14.485	1	9519200			18196	1617	11225	11282	17476	17476					0.10539217482710228
LDKKVEKV	8	Unmodified	_LDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S2	2	479.80035400390625	2	479.800217	957.585882	0.16363	7.8511E-05	-0.065898	-3.1618E-05	0.097735	4.6893E-05	479.8000750518697	22.009	0.3649	21.624	21.479	21.844	-0.38503					15	6	4	0	0	0	0.012008	1	7787	7787		160.69	26.394	1	75165000			18197	1617	11225	11282	17477	17477					0.10539217482710228
LDKKVEKV	8	Unmodified	_LDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S3	3	479.8002624511719	2	479.800217	957.585882	0.088971	4.2688E-05	0.13065	6.2688E-05	0.21962	0.00010538	479.8002137970564	21.174	0.26019	21.193	21.011	21.271	0.018446					10	4	3	0	0	0	0.025921	1	7368	7368		148.27	26.089	1	25107000			18198	1617	11225	11282	17478	17478					0.10539217482710228
LDKKVEKV	8	Unmodified	_LDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	HCT116MG_D190212_S4	4	479.7695617675781	2	479.800217	957.585882	0.35814	0.00017184	-0.15903	-7.6305E-05	0.19911	9.5533E-05	479.7999344414915	21.515	0.20765	21.296	21.166	21.374	-0.21832					6	3	2	0	0	0	0.025921	2	7428	7428;7434		148.27	14.363	1	9048800			18199	1617	11225	11282	17479;17480	17479					0.10539217482710228
LDKLGQPLLNE	11	Unmodified	_LDKLGQPLLNE_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000544054.5_1_12:122967996-122968128:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	MSMS	HCT116MG_D190212_S2	2	620.349365234375	2	620.350803	1238.68705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.934	1	36.82	36.32	37.32	-0.11478								0	0	0	0.90285	1	13828	13828		19.626	3.7788	1				18200	972	11226	11283	17481	17481					0.0772562439478861
LDKLHANAP	9	Unmodified	_LDKLHANAP_					0	0	0			REV__ENSG00000275700|ENST00000619387|AATF	REV__ENSG00000275700|ENST00000619387|AATF	MSMS	HCT116MG_D190212_S4	4	489.7726745605469	2	489.771991	977.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.447	1	30.09	29.59	30.59	-0.3571								0	0	0	0.67173	1	11032	11032		20.454	1.0146	1		+		18201	14458	11227	11284	17482	17482					0.039765896460380645
LDKLKERAQRF	11	Unmodified	_LDKLKERAQRF_					0	0	0		ENSG00000205323|ENST00000336133|SARNP	ENSG00000205323|ENST00000336133|SARNP	ENSG00000205323|ENST00000336133|SARNP	MULTI-SECPEP	HCT116MG_D190212_S1	1	468.243896484375	3	468.60877	1402.80448	0.47017	0.00022033	-0.31295	-0.00014665	0.15722	7.3673E-05	468.60855279967245	28.309	0.26442	28.309	28.164	28.429	0					12	4	3	0	0	0	0.36618	1	10347	10347		0.08335	0	1	19600000			18202	6378	11228	11285	17483	17483					0.11919202054195921
LDKQNDELV	9	Unmodified	_LDKQNDELV_					0	0	0			REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	REV__tr|U7SSZ2|U7SSZ2_FUSNUGlycosyltransferasefamily1domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01648PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	537.2772827148438	2	537.277303	1072.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.099	1	32.814	32.314	33.314	-0.28511								0	0	0	0.67173	1	12148	12148		20.454	3.3407	1		+		18203	17782	11229	11286	17484	17484					0.006685275098107013
LDKQTELTAAS	11	Unmodified	_LDKQTELTAAS_					0	0	0			REV__ENST00000553678.1_1_14:85995020-85995465:+|nuORF	REV__ENST00000553678.1_1_14:85995020-85995465:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	588.8092041015625	2	588.808968	1175.60338	0.57693	0.0003397	-0.24039	-0.00014154	0.33654	0.00019816	588.808781619851	28.258	0.36428	27.927	27.7	28.064	-0.33138					14	6	3	0	0	0	0.7298	1	10143	10143		10.8	10.8	1	12204000	+		18204	16438	11230	11287	17485	17485					0.022604682270412013
LDKRIKGTT	9	Unmodified	_LDKRIKGTT_					0	0	0			REV__ENST00000379752.5_1_1:157029186-157029948:-|nuORF	REV__ENST00000379752.5_1_1:157029186-157029948:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	516.0990600585938	2	516.314023	1030.61349	0.1009	5.2095E-05	0.30326	0.00015658	0.40416	0.00020867	516.3140653962757	53.341	1.0317	53.152	52.604	53.636	-0.18922					46	19	3	0	0	0	0.68648	1	20596	20596		6.2058	0	1	66077000	+		18205	11741	11231	11288	17486	17486					0.09941120742928433
LDKRVKKS	8	Unmodified	_LDKRVKKS_					0	0	0			REV__tr|U7SWF0|U7SWF0_FUSNUAmidophosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purFPE=3SV=1	REV__tr|U7SWF0|U7SWF0_FUSNUAmidophosphoribosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=purFPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	487.7914733886719	2	487.311284	972.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.836	1	47.467	46.967	47.967	-0.36907								0	0	0	0.8837	1	17696	17696		2.5775	0	1		+		18206	17849	11232	11289	17487	17487					0.12061441951141205
LDKSLSPQ	8	Unmodified	_LDKSLSPQ_					0	0	0			REV__ENSG00000173068|ENST00000380672|BNC2	REV__ENSG00000173068|ENST00000380672|BNC2	MSMS	HCT116MG_D190212_S4	4	444.2450866699219	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.822	1	22.585	22.085	23.085	-0.23758								0	0	0	0.81076	1	7959	7959		21.747	1.293	1		+		18207	13415	11233	11290	17488	17488					0.028217921435384596
LDLGAAKA	8	Unmodified	_LDLGAAKA_					0	0	0		ENSG00000099624|ENST00000215375|ATP5F1D;ENST00000590265.5_1_19:1242319-1244433:+|nuORF	ENSG00000099624|ENST00000215375|ATP5F1D	ENSG00000099624|ENST00000215375|ATP5F1D	MULTI-MSMS	HCT116MG_D190212_S2	2	758.4407348632812	1	758.44068	757.433404	1.0402	0.00078893	-0.67271	-0.00051021	0.3675	0.00027872	758.4401816968875	45.219	0.31149	45.127	44.996	45.307	-0.092472					6	5	2	0	0	0	0.46267	1	17222	17222		44.407	2.3125	1	16999000			18208	1639	11234	11291	17489	17489					0.04498441805935727
LDLGSLQAP	9	Unmodified	_LDLGSLQAP_					0	0	0		ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	457.25335693359375	2	457.2531	912.491647	0.05408	2.4728E-05	0.096217	4.3996E-05	0.1503	6.8724E-05	457.2531098081154	23.245	0.41711	23.245	23.001	23.418	0					10	7	2	0	0	0	0.14972	1	8281	8281		48.346	3.9388	1	5059900			18209	6848	11235	11292	17490	17490					0.03190078660566087
LDLGTTLVAT	10	Unmodified	_LDLGTTLVAT_					0	0	0			REV__PEX5L|p.R336Gfs*2|2|0.16|ENSG00000114757|chr3:179815938-179815938|T/-|frameshift_variant	REV__PEX5L|p.R336Gfs*2|2|0.16|ENSG00000114757|chr3:179815938-179815938|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	502.2148742675781	2	502.28714	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.883	1	31.507	31.007	32.007	-0.37529								0	0	0	0.92917	1	11590	11590		9.3831	1.473	1		+		18210	11516	11236	11293	17491	17491					0.05854903520571497
LDLIFVGP	8	Unmodified	_LDLIFVGP_					0	0	0			REV__LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant	REV__LNX2|p.L374Wfs*8|1|0.37|ENSG00000139517|chr13:27562518-27562518|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	437.25762939453125	2	437.257654	872.500755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.535	1	53.535	53.035	54.035	0								0	0	0	0.8837	1	20505	20505		2.5775	0	1		+		18211	12264	11237	11294	17492	17492					0.059404720169027314
LDLISQMIIR	10	Unmodified	_LDLISQMIIR_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	401.23919677734375	3	401.237286	1200.69003	0.25894	0.0001039	1.9427	0.00077947	2.2016	0.00088337	401.23926252579673	43.635	0.51546	43.559	43.3	43.816	-0.07592					20	9	4	0	0	0	0.87037	1	16526	16526		5.7834	0.88642	1	57832000			18212	2330	11238	11295	17493	17493					0.09771176247909352
LDLQMPYYLNW	11	Unmodified	_LDLQMPYYLNW_					0	0	0			REV__nc|ENSG00000130159|Q9BQ95-3|ECSIT	REV__nc|ENSG00000130159|Q9BQ95-3|ECSIT	MSMS	HCT116MG_D190212_S2	2	728.8047485351562	2	728.352488	1454.69042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.478	1	41.41	40.91	41.91	-0.068199								0	0	0	0.89672	1	15674	15674		20.415	5.1661	1		+		18213	11906	11239	11296	17494	17494					-0.018734488228801638
LDLRDVDENFW	11	Unmodified	_LDLRDVDENFW_					0	0	0		PRAMEF1|p.R140Kfs*23|1|0.27|ENSG00000116721|chr1:12794043-12794044|-/A|frameshift_variant;PRAMEF10|p.K406Tfs*15|1|0.1|ENSG00000187545|chr1:12893124-12893125|-/G|frameshift_variant;ENSG00000279169|ENST00000625019|PRAMEF13;ENSG00000187545|ENST00000235347|PRAMEF10;ENSG00000120952|ENST00000240189|PRAMEF2;ENSG00000116721|ENST00000332296|PRAMEF1;PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant;ENSG00000204481|ENST00000334600|PRAMEF14	PRAMEF1|p.R140Kfs*23|1|0.27|ENSG00000116721|chr1:12794043-12794044|-/A|frameshift_variant;PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant	PRAMEF1|p.R140Kfs*23|1|0.27|ENSG00000116721|chr1:12794043-12794044|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	711.3385009765625	2	711.338424	1420.66229	1.2076	0.00085902	-0.82492	-0.0005868	0.38269	0.00027222	711.3376275137484	42.523	0.46836	42.453	42.221	42.689	-0.069981					11	8	2	0	0	0	0.73364	1	16099	16099		9.3831	0	1	181440000			18214	9774;6337	11240	11297	17495	17495					-0.031210554786412104
LDLRRRLRRRR	11	Unmodified	_LDLRRRLRRRR_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MSMS	HCT116MG_D190212_S2	2	783.5043334960938	2	783.506015	1564.99748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.381	1	50.209	49.709	50.709	-0.1719								0	0	0	0.9598	1	19308	19308		1.1933	1.1933	1		+		18215	12079	11241	11298	17496	17496					0.2375780168458732
LDLSGNPRQP	10	Unmodified	_LDLSGNPRQP_					0	0	0		ENSG00000204970|ENST00000504120|PCDHA1	ENSG00000204970|ENST00000504120|PCDHA1	ENSG00000204970|ENST00000504120|PCDHA1	MULTI-SECPEP	HCT116MG_D190212_S1	1	548.2692260742188	2	548.790912	1095.56727	0.54773	0.00030059	0.12164	6.6754E-05	0.66937	0.00036734	548.7909721029498	34.347	0.36505	34.347	34.076	34.441	0					9	6	2	0	0	0	0.30788	1	12653	12653		13.042	0	1	8121400			18216	6362	11242	11299	17497	17497					0.023310558408638826
LDLVIRLPR	9	Unmodified	_LDLVIRLPR_					0	0	0		AluSc_dup33256|chr20:36047011-36047299:-|1.0450281466574736|0.0277790638852019|5.23|479.0|11|1|anti-sense	AluSc_dup33256|chr20:36047011-36047299:-|1.0450281466574736|0.0277790638852019|5.23|479.0|11|1|anti-sense	AluSc_dup33256|chr20:36047011-36047299:-|1.0450281466574736|0.0277790638852019|5.23|479.0|11|1|anti-sense	MULTI-MSMS	HCT116MG_D190212_S2	2	1094.70556640625	1	1094.70444	1093.69716	0.70684	0.00077378	-0.35062	-0.00038383	0.35622	0.00038995	1094.704430658069	60.218	0.56607	60.063	59.75	60.316	-0.15441					15	10	2	0	0	0	0.76704	1	23327	23327		0.6015	0	1	10302000			18217	102	11243	11300	17498	17498					0.15406276910630368
LDLVSRSRS	9	Unmodified	_LDLVSRSRS_					0	0	0			REV__ENST00000426367.1_1_X:123093242-123095163:-|nuORF	REV__ENST00000426367.1_1_X:123093242-123095163:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	516.7940673828125	2	516.793455	1031.57236	0.39449	0.00020387	0.45617	0.00023575	0.85067	0.00043962	516.7936373375201	47.394	1.4527	47.394	46.492	47.944	0					43	28	2	0	0	0	0.61923	1	17975	17975		10.074	0	1	16441000	+		18218	15555	11244	11301	17499	17499					0.057833597034687045
LDMEIHAY	8	Unmodified	_LDMEIHAY_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000368298.2_1_1:156104977-156106341:+|nuORF;ENST00000496738.5_1_1:156104620-156106879:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S3	3	496.231201171875	2	496.23131	990.448068	0.38545	0.00019127	0.19408	9.6309E-05	0.57954	0.00028758	496.23144328743916	42.891	0.3852	42.586	42.352	42.737	-0.30472					10	7	2	0	0	0	0.19622	1	15981	15981		74.396	19.623	1	7402500			18219	4464	11245	11302	17500	17500					-0.04753854108230371
LDMFSEEIKFY	11	Unmodified	_LDMFSEEIKFY_					0	0	0		KCNA1|p.N252Tfs*3|1|0.14|ENSG00000111262|chr12:4912129-4912129|A/-|frameshift_variant;KCNA1|p.F300Lfs*24|1|0.26|ENSG00000111262|chr12:4912274-4912274|T/-|frameshift_variant;ENSG00000111262|ENST00000382545|KCNA1	KCNA1|p.N252Tfs*3|1|0.14|ENSG00000111262|chr12:4912129-4912129|A/-|frameshift_variant	KCNA1|p.N252Tfs*3|1|0.14|ENSG00000111262|chr12:4912129-4912129|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	711.5087280273438	2	711.336504	1420.65845	1.2076	0.00085902	1.8741	0.0013331	3.0817	0.0021921	711.3376275137484	42.523	0.46836	42.453	42.221	42.689	-0.069981					11	8	2	0	0	0	0.72373	1	16139	16139		13.042	3.6593	1	181440000			18220	2281	11246	11303	17501	17501					-0.0350486129671026
LDMSLAQVMQ	10	Unmodified	_LDMSLAQVMQ_					0	0	0			REV__ENST00000303746.9_1_16:3018100-3018271:+|nuORF	REV__ENST00000303746.9_1_16:3018100-3018271:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	567.7753295898438	2	568.277934	1134.54132	0.49518	0.0002814	-2.3849	-0.0013553	-1.8897	-0.0010739	568.2766671591888	25.009	0.51962	24.633	24.349	24.868	-0.37521					14	9	2	0	0	0	0.28233	1	8994	8994		16.149	0	1	20186000	+		18221	14803	11247	11304	17502	17502					-0.020572977172832907
LDNEDKISIK	10	Unmodified	_LDNEDKISIK_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MSMS	HCT116MG_D190212_S3	3	588.0593872070312	2	587.819335	1173.62412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.18	1	14.26	13.76	14.76	0.079683								0	0	0	0.9696	1	4547	4547		0.35063	0	1				18222	836	11248	11305	17503	17503					0.04425058606716448
LDNEPYKRDE	10	Unmodified	_LDNEPYKRDE_					0	0	0			REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	639.804443359375	2	639.801674	1277.58879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.484	1	47.113	46.613	47.613	-0.37038								0	0	0	0.95507	1	17563	17563		3.5965	0.31518	1		+		18223	10788	11249	11306	17504	17504					-0.03889603921084017
LDNIELYWNSY	11	Unmodified	_LDNIELYWNSY_					0	0	0		ENST00000556716.5_1_14:21486897-21488105:-|nuORF;ENST00000557416.5_1_14:21486655-21488105:-|nuORF;ENST00000554277.5_1_14:21487301-21489989:-|nuORF;nc|ENSG00000165795|Q9UN36-4|NDRG2;nc|ENSG00000165795|Q9UN36-5|NDRG2;nc|ENSG00000165795|Q9UN36-2|NDRG2;nc|ENSG00000165795|Q9UN36-3|NDRG2;nc|ENSG00000165795|Q9UN36-6|NDRG2;ENSG00000165795|ENST00000556147|NDRG2	ENST00000556716.5_1_14:21486897-21488105:-|nuORF	ENST00000556716.5_1_14:21486897-21488105:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	715.3355102539062	2	715.33535	1428.65615	1.1106	0.00079449	-0.47894	-0.0003426	0.63171	0.00045189	715.3348112028898	56.313	0.20682	56.13	56.001	56.207	-0.18261					10	3	4	0	0	0	0.7259	1	21737	21737		12.241	0	1	54317000			18224	4799	11250	11307	17505	17505					-0.041035737101083214
LDNIELYWNSY	11	Unmodified	_LDNIELYWNSY_					0	0	0		ENST00000556716.5_1_14:21486897-21488105:-|nuORF;ENST00000557416.5_1_14:21486655-21488105:-|nuORF;ENST00000554277.5_1_14:21487301-21489989:-|nuORF;nc|ENSG00000165795|Q9UN36-4|NDRG2;nc|ENSG00000165795|Q9UN36-5|NDRG2;nc|ENSG00000165795|Q9UN36-2|NDRG2;nc|ENSG00000165795|Q9UN36-3|NDRG2;nc|ENSG00000165795|Q9UN36-6|NDRG2;ENSG00000165795|ENST00000556147|NDRG2	ENST00000556716.5_1_14:21486897-21488105:-|nuORF	ENST00000556716.5_1_14:21486897-21488105:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	715.3362426757812	2	715.33535	1428.65615	0.75737	0.00054177	0.46673	0.00033387	1.2241	0.00087564	715.3359430935346	56.407	0.2622	56.124	55.993	56.255	-0.28367					6	4	2	0	0	0	0.71532	1	21440	21440		16.149	9.4259	1	6157200			18225	4799	11250	11307	17506	17506					-0.041035737101083214
LDNIELYWNSY	11	Unmodified	_LDNIELYWNSY_					0	0	0		ENST00000556716.5_1_14:21486897-21488105:-|nuORF;ENST00000557416.5_1_14:21486655-21488105:-|nuORF;ENST00000554277.5_1_14:21487301-21489989:-|nuORF;nc|ENSG00000165795|Q9UN36-4|NDRG2;nc|ENSG00000165795|Q9UN36-5|NDRG2;nc|ENSG00000165795|Q9UN36-2|NDRG2;nc|ENSG00000165795|Q9UN36-3|NDRG2;nc|ENSG00000165795|Q9UN36-6|NDRG2;ENSG00000165795|ENST00000556147|NDRG2	ENST00000556716.5_1_14:21486897-21488105:-|nuORF	ENST00000556716.5_1_14:21486897-21488105:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	715.33535	1428.65615	1.1106	0.00079449	-0.47894	-0.0003426	0.63171	0.00045189	715.3348112028898	56.313	0.20682	56.13	56.001	56.207	-0.18261	0.0051498	-0.00015054	NaN	16.149	10	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54317000			18226	4799	11250	11307							-0.041035737101083214
LDNIELYWNSY	11	Unmodified	_LDNIELYWNSY_					0	0	0		ENST00000556716.5_1_14:21486897-21488105:-|nuORF;ENST00000557416.5_1_14:21486655-21488105:-|nuORF;ENST00000554277.5_1_14:21487301-21489989:-|nuORF;nc|ENSG00000165795|Q9UN36-4|NDRG2;nc|ENSG00000165795|Q9UN36-5|NDRG2;nc|ENSG00000165795|Q9UN36-2|NDRG2;nc|ENSG00000165795|Q9UN36-3|NDRG2;nc|ENSG00000165795|Q9UN36-6|NDRG2;ENSG00000165795|ENST00000556147|NDRG2	ENST00000556716.5_1_14:21486897-21488105:-|nuORF	ENST00000556716.5_1_14:21486897-21488105:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	715.33535	1428.65615	0.93802	0.000671	-0.44353	-0.00031728	0.49449	0.00035372	715.836575365895	56.428	0.15778	56.122	56.042	56.2	-0.30626	-0.0036678	-9.9894E-05	NaN	16.149	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1797600			18227	4799	11250	11307							-0.041035737101083214
LDNMPNDE	8	Unmodified	_LDNMPNDE_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MSMS	HCT116MG_D190212_S4	4	474.19073486328125	2	474.192382	946.370211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.003	1	35.617	35.117	36.117	-0.38558								0	0	0	0.8837	1	13158	13158		8.5933	0	1				18228	4768	11251	11308	17507	17507					-0.10511911764263004
LDNPWKSDSNQ	11	Unmodified	_LDNPWKSDSNQ_					0	0	0		ENSG00000164512|ENST00000341048|ANKRD55;nc|ENSG00000164512|Q3KP44-3|ANKRD55;nc|ENSG00000164512|Q3KP44-2|ANKRD55	ENSG00000164512|ENST00000341048|ANKRD55	ENSG00000164512|ENST00000341048|ANKRD55	MULTI-MSMS	HCT116MG_D190212_S4	4	652.2997436523438	2	652.299298	1302.58404	0.51224	0.00033414	-0.235	-0.00015329	0.27724	0.00018084	652.2991911997414	30.675	0.48774	30.311	30.181	30.668	-0.36416					28	16	3	0	0	0	0.71182	1	11078	11078		17.443	0.87677	1	9208600			18229	4700	11252	11309	17508	17508					-0.055144880638636096
LDNQKLVPQP	10	Unmodified	_LDNQKLVPQP_					0	0	0		ENST00000558045.2_1_14:24608567-24608675:-|nuORF;ENSG00000100908|ENST00000216799|EMC9	ENST00000558045.2_1_14:24608567-24608675:-|nuORF	ENST00000558045.2_1_14:24608567-24608675:-|nuORF	MSMS	HCT116MG_D190212_S1	1	576.3226318359375	2	576.324588	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.842	1	28.842	28.342	29.342	0								0	0	0	0.91279	1	10519	10519		13.042	2.9685	1				18230	1738	11253	11310	17509	17509					0.06533086051786086
LDNTGGRLFF	10	Unmodified	_LDNTGGRLFF_					0	0	0		ENSG00000196553|ENST00000636229|CCDC196	ENSG00000196553|ENST00000636229|CCDC196	ENSG00000196553|ENST00000636229|CCDC196	MULTI-SECPEP	HCT116MG_D190212_S2	2	569.77294921875	2	570.29583	1138.57711	0.71076	0.00040534	-0.99731	-0.00056876	-0.28656	-0.00016342	570.2944955803825	33.574	0.30771	33.381	33.123	33.43	-0.19297					6	5	2	0	0	0	0.28233	1	12398	12398		27.629	8.3718	1	12843000			18231	6085	11254	11311	17510	17510					0.013362438462309001
LDPGGPPE	8	Unmodified	_LDPGGPPE_					0	0	0			REV__ENSG00000104856|ENST00000221452|RELB	REV__ENSG00000104856|ENST00000221452|RELB	MULTI-SECPEP	HCT116MG_D190212_S2	2	391.2193298339844	2	391.189968	780.365384	0.054655	2.1381E-05	0.034745	1.3592E-05	0.089401	3.4973E-05	391.1898276153854	19.959	0.57117	19.584	19.403	19.974	-0.37503					22	10	4	0	0	0	0.24939	1	7041	7041		23.148	0	1	94322000	+		18232	11223	11255	11312	17511	17511					-0.03358427844716516
LDPHGQLHAHY	11	Unmodified	_LDPHGQLHAHY_					0	0	0			REV__SGCA|p.H84Tfs*127|1|0.39|ENSG00000108823|chr17:50167670-50167670|C/-|frameshift_variant	REV__SGCA|p.H84Tfs*127|1|0.39|ENSG00000108823|chr17:50167670-50167670|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	644.3162231445312	2	644.315086	1286.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.802	1	43.427	42.927	43.927	-0.37433								0	0	0	0.95113	1	16114	16114		5.7319	1.203	1		+		18233	11355	11256	11313	17512	17512					-0.01622450519244012
LDPLHRRR	8	Unmodified	_LDPLHRRR_					0	0	0			REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	MULTI-MSMS	HCT116MG_D190212_S3	3	531.817626953125	2	531.817599	1061.62064	0.70292	0.00037383	-0.77638	-0.00041289	-0.073458	-3.9066E-05	531.8172797110778	46.465	0.40883	46.153	45.978	46.387	-0.31237					13	7	2	0	0	0	0.86564	1	17414	17414		2.5775	2.5775	1	4770700	+		18234	13973	11257	11314	17513	17513					0.09229898134026371
LDPVLPVLL	9	Unmodified	_LDPVLPVLL_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MSMS	HCT116MG_D190212_S4	4	489.6304931640625	2	489.815336	977.616119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.683	1	53.354	52.854	53.854	-0.32923								0	0	0	0.76973	1	20050	20050		1.8442	0	1		+		18235	12270	11258	11315	17514	17514					0.12641576147905198
LDQGPLENH	9	Unmodified	_LDQGPLENH_					0	0	0		ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	MULTI-SECPEP	HCT116MG_D190212_S3	3	511.2386779785156	2	511.748713	1021.48287	0.16247	8.3142E-05	-0.728	-0.00037255	-0.56553	-0.00028941	511.7485398672527	18.607	0.72927	18.678	18.2	18.929	0.071436					21	13	2	0	0	0	0.20889	1	6412	6412		13.042	2.9685	1	4002300			18236	5817	11259	11316	17515	17515					-0.027008949758965173
LDQIFVHVS	9	Unmodified	_LDQIFVHVS_					0	0	0			REV__ADAMTS10|p.I734V|1|0.43|ENSG00000142303|chr19:8586855-8586855|T/C|missense_variant	REV__ADAMTS10|p.I734V|1|0.43|ENSG00000142303|chr19:8586855-8586855|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	353.0984802246094	3	353.194075	1056.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.723	1	58.44	57.94	58.94	-0.28305								0	0	0	0.76973	1	22079	22079		0.96228	0	1		+		18237	9855	11260	11317	17516	17516					0.034377429602727716
LDQKIPAPVSK	11	Unmodified	_LDQKIPAPVSK_					0	0	0		ENST00000368444.7_1_6:123100853-123100973:+|nuORF	ENST00000368444.7_1_6:123100853-123100973:+|nuORF	ENST00000368444.7_1_6:123100853-123100973:+|nuORF	MSMS	HCT116MG_D190212_S4	4	598.3560180664062	2	598.355888	1194.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.459	1	37.075	36.575	37.575	-0.3839								0	0	0	0.90489	1	13747	13747		19.362	0.10495	1				18238	7402	11261	11318	17517	17517					0.10766232119999586
LDQLKRIVKY	10	Unmodified	_LDQLKRIVKY_					0	0	0			REV__ENST00000471909.1_1_21:45217249-45223652:+|nuORF	REV__ENST00000471909.1_1_21:45217249-45223652:+|nuORF	MSMS	HCT116MG_D190212_S3	3	638.3964233398438	2	638.392805	1274.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.721	1	42.417	41.917	42.917	-0.30352								0	0	0	0.95507	1	15923	15923		3.5965	0.31518	1		+		18239	12825	11262	11319	17518	17518					0.14466200282345199
LDQLLLWAL	9	Unmodified	_LDQLLLWAL_					0	0	0			REV__ENSG00000224940|ENST00000446477|PRRT4	REV__ENSG00000224940|ENST00000446477|PRRT4	MSMS	HCT116MG_D190212_S3	3	362.32647705078125	3	362.21822	1083.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.867	1	58.603	58.103	59.103	-0.26405								0	0	0	0.76967	1	22403	22403		1.0715	0	1		+		18240	14305	11263	11320	17519	17519					0.09436077033842594
LDQLQLEG	8	Unmodified	_LDQLQLEG_					0	0	0		nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;PNPLA8|p.T757Qfs*10|1|0.38|ENSG00000135241|chr7:108472481-108472481|T/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8;PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant;PNPLA8|p.K736E|1|0.07|ENSG00000135241|chr7:108472544-108472544|T/C|missense_variant	nc|ENSG00000135241|Q9NP80-3|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-MSMS	HCT116MG_D190212_S2	2	458.2425842285156	2	458.242732	914.470912	0.31857	0.00014598	-0.27167	-0.00012449	0.046906	2.1494E-05	458.2424735978529	40.511	0.30925	40.442	40.313	40.622	-0.069626					8	5	2	0	0	0	0.22822	1	15286	15286		68.081	2.8457	1	26956000			18241	3333	11264	11321	17520	17520					0.010254882809135779
LDQLQLEG	8	Unmodified	_LDQLQLEG_					0	0	0		nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;PNPLA8|p.T757Qfs*10|1|0.38|ENSG00000135241|chr7:108472481-108472481|T/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8;PNPLA8|p.Y737C|1|0.25|ENSG00000135241|chr7:108472540-108472540|T/C|missense_variant;PNPLA8|p.K736E|1|0.07|ENSG00000135241|chr7:108472544-108472544|T/C|missense_variant	nc|ENSG00000135241|Q9NP80-3|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-MSMS	HCT116MG_D190212_S3	3	458.24310302734375	2	458.242732	914.470912	0.49011	0.00022459	0.25666	0.00011761	0.74677	0.0003422	458.2427700934607	40.699	0.20854	40.397	40.267	40.476	-0.30161					6	3	2	0	0	0	0.44484	1	15142	15142		46.021	0	1	9121700			18242	3333	11264	11321	17521	17521					0.010254882809135779
LDQLREPYHQ	10	Unmodified	_LDQLREPYHQ_					0	0	0		ENST00000243077.7_1_12:57574146-57574468:+|nuORF	ENST00000243077.7_1_12:57574146-57574468:+|nuORF	ENST00000243077.7_1_12:57574146-57574468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1298.647705078125	1	1298.64878	1297.6415	-0.012562	-1.6313E-05	-1.1499	-0.0014933	-1.1625	-0.0015097	1298.6477265189405	38.49	0.26081	38.49	38.332	38.592	0					6	4	2	0	0	0	0.79819	1	14441	14441		12.175	2.1008	1	6944000			18243	6781	11265	11322	17522	17522					0.004583989323919013
LDQLWVFCL	9	Unmodified	_LDQLWVFCL_					0	0	0			REV__ENST00000471395.1_1_2:70043067-70043361:+|nuORF	REV__ENST00000471395.1_1_2:70043067-70043361:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	569.2803955078125	2	568.794078	1135.5736	0.40862	0.00023242	-0.87682	-0.00049873	-0.4682	-0.00026631	568.7934505503874	19.231	0.1562	18.862	18.784	18.94	-0.3695					4	2	2	0	0	0	0.24622	1	6627	6627		7.2892	7.2892	1	3532100	+		18244	15871	11266	11323	17523	17523					0.011238577480071399
LDQNECIYKA	10	Unmodified	_LDQNECIYKA_					0	0	0			REV__ALB|p.S294L|1|0.32|ENSG00000163631|chr4:73413457-73413457|C/T|missense_variant	REV__ALB|p.S294L|1|0.32|ENSG00000163631|chr4:73413457-73413457|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	598.78466796875	2	598.784438	1195.55432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.281	1	28.964	28.464	29.464	-0.31613								0	0	0	0.85631	1	10719	10719		21.537	3.402	1		+		18245	9911	11267	11324	17524	17524					-0.03563143333531116
LDQPINTTDLP	11	Unmodified	_LDQPINTTDLP_					0	0	0		ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	MULTI-SECPEP	HCT116MG_D190212_S3	3	613.7757568359375	2	613.816793	1225.61903	0.42818	0.00026282	0.089041	5.4655E-05	0.51722	0.00031748	613.8168329603772	33.931	0.41624	33.637	33.455	33.871	-0.29419					24	7	5	0	0	0	0.36468	1	12402	12402		2.086	0	1	60992000			18246	1555	11268	11325	17525	17525					0.015247547440822018
LDQSTQLT	8	Unmodified	_LDQSTQLT_					0	0	0		ENSG00000255561|ENST00000260257|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	MULTI-SECPEP	HCT116MG_D190212_S4	4	452.7315673828125	2	453.232364	904.450176	0.29089	0.00013184	1.5291	0.00069305	1.82	0.00082489	453.2329965175256	29.135	0.31145	28.794	28.678	28.989	-0.3406					7	5	2	0	0	0	0.28533	1	10516	10516		26.884	5.137	1	3004500			18247	6605	11269	11326	17526	17526					-0.005871020987456177
LDQVAALTW	9	Unmodified	_LDQVAALTW_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG;TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant;TG|p.E2744Vfs*20|1|0.07|ENSG00000042832|chr8:133134716-133134717|GG/-|frameshift_variant	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-SECPEP	HCT116MG_D190212_S2	2	508.2930908203125	2	508.7742	1015.53385	0.42958	0.00021856	0.029553	1.5036E-05	0.45913	0.00023359	508.7742142605165	41.455	0.30676	41.387	41.242	41.549	-0.068199					7	5	2	0	0	0	0.22506	1	15701	15701		26.268	14.628	1	19728000			18248	1014	11270	11327	17527	17527					0.02670054068948957
LDQVLFPYP	9	Unmodified	_LDQVLFPYP_					0	0	0		ENSG00000137265|ENST00000380956|IRF4;nc|ENSG00000137265|Q15306-2|IRF4	ENSG00000137265|ENST00000380956|IRF4	ENSG00000137265|ENST00000380956|IRF4	MSMS	HCT116MG_D190212_S1	1	546.2926635742188	2	546.292225	1090.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.466	1	33.466	32.966	33.966	0								0	0	0	0.61599	1	12386	12386		23.148	1.4018	1				18249	3470	11271	11328	17528	17528					0.028235112458105505
LDQYSGVNLP	10	Unmodified	_LDQYSGVNLP_					0	0	0			REV__nc|ENSG00000117501|Q5TGP6|MROH9	REV__nc|ENSG00000117501|Q5TGP6|MROH9	MSMS	HCT116MG_D190212_S3	3	553.2808837890625	2	553.279846	1104.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.077	1	38.776	38.276	39.276	-0.30137								0	0	0	0.82636	1	14497	14497		25.399	3.8092	1		+		18250	17113	11272	11329	17529	17529					-0.0029516862757645868
LDRELQDKY	9	Unmodified	_LDRELQDKY_					0	0	0		FAT4|p.R1065K|1|0.29|ENSG00000196159|chr4:125319605-125319605|G/A|missense_variant	FAT4|p.R1065K|1|0.29|ENSG00000196159|chr4:125319605-125319605|G/A|missense_variant	FAT4|p.R1065K|1|0.29|ENSG00000196159|chr4:125319605-125319605|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	590.3036499023438	2	590.303852	1178.59315	0.3286	0.00019397	0.37376	0.00022063	0.70236	0.0004146	590.302772862055	30.492	0.20479	30.208	30.13	30.335	-0.28453					6	3	2	0	0	0	0.28785	1	11259	11259		34.402	9.0024	1	24379000			18251	9154	11273	11330	17530	17530					0.010999052924717034
LDRGRTVRPRR	11	Unmodified	_LDRGRTVRPRR_					0	0	0		ENST00000526177.5_1_11:75155472-75160957:-|nuORF;ENST00000527322.5_1_11:75155472-75168807:-|nuORF	ENST00000526177.5_1_11:75155472-75160957:-|nuORF	ENST00000526177.5_1_11:75155472-75160957:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	691.0355224609375	2	691.416	1380.81745	0.65324	0.00045166	-0.0062642	-4.3312E-06	0.64698	0.00044733	691.4157617300664	58.16	0.12609	58.16	58.085	58.211	0					4	2	2	0	0	0	0.74191	1	22393	22393		1.3295	0.13619	1	19583000			18252	8586	11274	11331	17531	17531					0.14227077956957146
LDRHVFKKAN	10	Unmodified	_LDRHVFKKAN_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	MSMS	HCT116MG_D190212_S1	1	614.5631713867188	2	614.351471	1226.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.803	1	34.803	34.303	35.303	0								0	0	0	0.91638	1	12925	12925		12.241	0.74595	1		+		18253	17212	11275	11332	17532	17532					0.08411303274192505
LDRLLFYRWLI	11	Unmodified	_LDRLLFYRWLI_					0	0	0			REV__nc|ENSG00000151876|Q9UKT5-2|FBXO4	REV__nc|ENSG00000151876|Q9UKT5-2|FBXO4	MSMS	HCT116MG_D190212_S2	2	754.3407592773438	2	754.442829	1506.87111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.644	1	38.559	38.059	39.059	-0.084618								0	0	0	0.96141	1	14521	14521		0.35063	0	1		+		18254	12617	11276	11333	17533	17533					0.13794437616138566
LDRLLFYRWLI	11	Unmodified	_LDRLLFYRWLI_					0	0	0			REV__nc|ENSG00000151876|Q9UKT5-2|FBXO4	REV__nc|ENSG00000151876|Q9UKT5-2|FBXO4	MSMS	HCT116MG_D190212_S2	2	754.44384765625	2	754.442829	1506.87111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.08	1	46.958	46.458	47.458	-0.12175								0	0	0	0.96149	1	17950	17950		0.30703	0	1		+		18255	12617	11276	11333	17534	17534					0.13794437616138566
LDRLLFYRWLI	11	Unmodified	_LDRLLFYRWLI_					0	0	0			REV__nc|ENSG00000151876|Q9UKT5-2|FBXO4	REV__nc|ENSG00000151876|Q9UKT5-2|FBXO4	MSMS	HCT116MG_D190212_S3	3	754.443603515625	2	754.442829	1506.87111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.809	1	48.493	47.993	48.993	-0.31596								0	0	0	0.95954	1	18366	18366		1.3295	0	1		+		18256	12617	11276	11333	17535	17535					0.13794437616138566
LDRRSWPNVPQ	11	Unmodified	_LDRRSWPNVPQ_					0	0	0			REV__ENST00000347606.8_1_20:45140740-45142186:-|nuORF	REV__ENST00000347606.8_1_20:45140740-45142186:-|nuORF	MSMS	HCT116MG_D190212_S2	2	684.3634033203125	2	684.362567	1366.71058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.914	1	32.702	32.202	33.202	-0.21135								0	0	0	0.95113	1	12195	12195		5.7319	0	1		+		18257	15017	11277	11334	17536	17536					0.04189482951937862
LDRSSMAP	8	Unmodified	_LDRSSMAP_					0	0	0			REV__SAGE1|p.I823Lfs*5|1|0.48|ENSG00000181433|chrX:135911895-135911895|G/-|frameshift_variant	REV__SAGE1|p.I823Lfs*5|1|0.48|ENSG00000181433|chrX:135911895-135911895|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	438.71624755859375	2	438.715827	875.417102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.221	1	46.906	46.406	47.406	-0.31466								0	0	0	0.8837	1	17727	17727		13.508	0	1		+		18258	13689	11278	11335	17537	17537					-0.025590074224510317
LDRWEEIP	8	Unmodified	_LDRWEEIP_					0	0	0			REV__ENSG00000143858|ENST00000367268|SYT2	REV__ENSG00000143858|ENST00000367268|SYT2	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.7344970703125	2	529.269281	1056.52401	0.34752	0.00018393	-0.29088	-0.00015395	0.056636	2.9976E-05	529.2690485346506	39.58	0.40908	39.502	39.428	39.837	-0.077835					9	7	2	0	0	0	0.29402	1	14988	14988		11.64	0	1	23374000	+		18259	12406	11279	11336	17538	17538					-0.0019913393641672883
LDRWLLVPI	9	Unmodified	_LDRWLLVPI_					0	0	0			REV__ST6GALNAC2|p.G94R|1|0.24|ENSG00000070731|chr17:76574446-76574446|C/T|missense_variant	REV__ST6GALNAC2|p.G94R|1|0.24|ENSG00000070731|chr17:76574446-76574446|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	562.3432006835938	2	562.844959	1123.67537	0.34894	0.0001964	-0.18319	-0.00010311	0.16574	9.3288E-05	562.8449374732487	47.35	0.57379	47.035	46.593	47.166	-0.31525					15	11	2	0	0	0	0.26676	1	17671	17671		0.52476	0	1	3711200	+		18260	17596	11280	11337	17539	17539					0.11847472162094164
LDRYDRYRCYK	11	Unmodified	_LDRYDRYRCYK_					0	0	0			REV__ANO4|p.P864L|1|0.27|ENSG00000151572|chr12:101120540-101120540|C/T|missense_variant	REV__ANO4|p.P864L|1|0.27|ENSG00000151572|chr12:101120540-101120540|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	775.8795776367188	2	775.880267	1549.74598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.236	1	43.163	42.663	43.663	-0.073376								0	0	0	0.95954	1	16388	16388		1.3295	0	1		+		18261	9951	11281	11338	17540	17540					-0.006902225825569985
LDSCRLFIVVP	11	Unmodified	_LDSCRLFIVVP_					0	0	0		ENST00000395290.6_1_11:47490324-47490525:-|nuORF	ENST00000395290.6_1_11:47490324-47490525:-|nuORF	ENST00000395290.6_1_11:47490324-47490525:-|nuORF	MSMS	HCT116MG_D190212_S2	2	631.353759765625	2	631.352291	1260.69003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.983	1	43.905	43.405	44.405	-0.078373								0	0	0	0.94284	1	16692	16692		10.074	3.8681	1				18262	7643	11282	11339	17541	17541					0.0701117624789731
LDSEALLTL	9	Unmodified	_LDSEALLTL_					0	0	0		FBN3|p.G2797Afs*4|1|0.38|ENSG00000142449|chr19:8065959-8065959|C/-|frameshift_variant;ENSG00000142449|ENST00000600128|FBN3	FBN3|p.G2797Afs*4|1|0.38|ENSG00000142449|chr19:8065959-8065959|C/-|frameshift_variant	FBN3|p.G2797Afs*4|1|0.38|ENSG00000142449|chr19:8065959-8065959|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	974.5410766601562	1	974.540454	973.533177	0.75261	0.00073345	-0.03252	-3.1693E-05	0.72009	0.00070176	974.5404575168344	56.573	0.21278	56.391	56.312	56.524	-0.18261					7	3	3	0	0	0	0.023611	1	21856	21856		92.822	7.4654	1	28693000			18263	3756	11283	11340	17542	17542					0.04535214629231632
LDSFWLVSY	9	Unmodified	_LDSFWLVSY_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|193|1|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|193|1|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|193|1|anti-sense	MSMS	HCT116MG_D190212_S2	2	565.2824096679688	2	565.281857	1128.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.128	1	37.018	36.518	37.518	-0.10934								0	0	0	0.76669	1	13906	13906		12.532	1.7076	1				18264	9281	11284	11341	17543	17543					-0.009970791338446361
LDSGMWCSTCA	11	Unmodified	_LDSGMWCSTCA_					0	0	0		ENST00000519604.5_1_20:61920746-61920884:+|nuORF	ENST00000519604.5_1_20:61920746-61920884:+|nuORF	ENST00000519604.5_1_20:61920746-61920884:+|nuORF	MSMS	HCT116MG_D190212_S1	1	587.2246704101562	2	587.222302	1172.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.471	1	35.471	34.971	35.971	0								0	0	0	0.95196	1	13195	13195		5.2969	0.54088	1				18265	8549	11285	11342	17544	17544					-0.1492668041687466
LDSHKIDYF	9	Unmodified	_LDSHKIDYF_					0	0	0			REV__ENST00000549913.6_1_12:113307544-113334582:+|nuORF	REV__ENST00000549913.6_1_12:113307544-113334582:+|nuORF	MSMS	HCT116MG_D190212_S1	1	569.28466796875	2	569.282389	1136.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.438	1	57.438	56.938	57.938	0								0	0	0	0.76913	1	22103	22103		3.9444	0.3479	1		+		18266	10970	11286	11343	17545	17545					-0.012588647649408813
LDSIKSTKE	9	Unmodified	_LDSIKSTKE_					0	0	0			REV__ENSG00000175707|ENST00000320567|KDF1	REV__ENSG00000175707|ENST00000320567|KDF1	MSMS	HCT116MG_D190212_S4	4	510.7817687988281	2	510.782222	1019.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.847	1	44.474	43.974	44.974	-0.37326								0	0	0	0.74436	1	16526	16526		16.942	0	1		+		18267	13527	11287	11344	17546	17546					0.04089715515203807
LDSRYRYLT	9	Unmodified	_LDSRYRYLT_					0	0	0			REV__nc|ENSG00000086717|O14829-5|PPEF1	REV__nc|ENSG00000086717|O14829-5|PPEF1	MSMS	HCT116MG_D190212_S2	2	396.2127990722656	3	396.212017	1185.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.91	1	24.535	24.035	25.035	-0.37521								0	0	0	0.76699	1	8947	8947		11.495	2.5185	1		+		18268	10937	11288	11345	17547	17547					0.028839153919761884
LDSVHHVTP	9	Unmodified	_LDSVHHVTP_					0	0	0			REV__ENST00000568805.5_1_16:20809048-20811281:-|nuORF	REV__ENST00000568805.5_1_16:20809048-20811281:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	502.24591064453125	2	502.761623	1003.50869	0.28987	0.00014574	-1.1891	-0.00059783	-0.89922	-0.00045209	502.7617307812392	21.323	0.88996	21.341	20.698	21.588	0.018446					31	16	4	0	0	0	0.22781	1	7198	7198		7.2892	0	1	5541500	+		18269	14043	11289	11346	17548	17548					0.0070799926638756006
LDSYGLGG	8	Unmodified	_LDSYGLGG_					0	0	0			REV__ENSG00000163792|ENST00000296096|TCF23	REV__ENSG00000163792|ENST00000296096|TCF23	MULTI-MSMS	HCT116MG_D190212_S2	2	391.18963623046875	2	391.189968	780.365384	0.054655	2.1381E-05	0.034745	1.3592E-05	0.089401	3.4973E-05	391.1898276153854	19.959	0.57117	19.584	19.403	19.974	-0.37503					22	10	4	0	0	0	0.50777	1	6938	6938		40.449	2.2974	1	94322000	+		18270	12949	11290	11347	17549	17549					-0.033584278447051474
LDTADRIPP	9	Unmodified	_LDTADRIPP_					0	0	0			REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	MSMS	HCT116MG_D190212_S2	2	499.2696838378906	2	499.269281	996.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.598	1	26.237	25.737	26.737	-0.36164								0	0	0	0.74436	1	9630	9630		16.942	3.0362	1		+		18271	12686	11291	11348	17550	17550					0.025608660635725755
LDTALLGV	8	Unmodified	_LDTALLGV_					0	0	0			REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3	REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3	MSMS	HCT116MG_D190212_S3	3	401.2392578125	2	401.239461	800.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.063	1	45.751	45.251	46.251	-0.31237								0	0	0	0.8837	1	17265	17265		2.5775	0	1		+		18272	12946	11292	11349	17551	17551					0.05615595120195849
LDTEDFYCN	9	Unmodified	_LDTEDFYCN_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MSMS	HCT116MG_D190212_S2	2	560.218994140625	2	560.218597	1118.42264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.379	1	28.049	27.549	28.549	-0.32987								0	0	0	0.76902	1	10349	10349		4.3292	0	1		+		18273	10879	11293	11350	17552	17552					-0.13183373421293254
LDTLLVIV	8	Unmodified	_LDTLLVIV_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MSMS	HCT116MG_D190212_S2	2	443.2850646972656	2	443.286411	884.55827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.353	1	42.283	41.783	42.783	-0.069431								0	0	0	0.8837	1	16029	16029		14.582	0	1				18274	5980	11294	11351	17553	17553					0.11137314222457917
LDTVLCHLL	9	Carbamidomethyl (C)	_LDTVLC(Carbamidomethyl (C))HLL_	LDTVLC(1)HLL		LDTVLC(44)HLL		0	1	0			REV__nc|ENSG00000243335|Q96MP8-2|KCTD7	REV__nc|ENSG00000243335|Q96MP8-2|KCTD7	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2972412109375	2	542.296985	1082.57942	0.5867	0.00031817	0.009768	5.2971E-06	0.59647	0.00032346	542.2969037118597	56.52	0.21037	56.338	56.207	56.418	-0.18261					5	3	2	0	0	0	0.17018	1	21839	21839		44.407	15.92	1	34510000	+		18275	14362	11295	11352	17554	17554	59				0.04142956259670427
LDTVLCHLL	9	Carbamidomethyl (C)	_LDTVLC(Carbamidomethyl (C))HLL_					0	1	0			REV__nc|ENSG00000243335|Q96MP8-2|KCTD7	REV__nc|ENSG00000243335|Q96MP8-2|KCTD7	MULTI-MATCH	HCT116MG_D190212_S1	1		2	542.296985	1082.57942	0.51599	0.00027982	-0.070257	-3.81E-05	0.44573	0.00024172	542.2969544338426	56.454	0.15411	56.454	56.326	56.48	0	0.058182	-6.2011E-05	NaN	44.407	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10529000	+		18276	14362	11295	11352			59				0.04142956259670427
LDTYFKKANLF	11	Unmodified	_LDTYFKKANLF_					0	0	0			REV__ENSG00000147606|ENST00000276609|SLC26A7	REV__ENSG00000147606|ENST00000276609|SLC26A7	MSMS	HCT116MG_D190212_S2	2	680.3704223632812	2	680.368995	1358.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.673	1	45.572	45.072	46.072	-0.1014								0	0	0	0.94538	1	17376	17376		8.7454	3.0136	1		+		18277	12520	11296	11353	17555	17555					0.05842501291476765
LDVFNNEMVP	10	Unmodified	_LDVFNNEMVP_					0	0	0			REV__ENSG00000166164|ENST00000394688|BRD7	REV__ENSG00000166164|ENST00000394688|BRD7	MSMS	HCT116MG_D190212_S1	1	588.7928466796875	2	589.281531	1176.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.027	1	34.027	33.527	34.527	0								0	0	0	0.92917	1	12612	12612		9.3831	0.63772	1		+		18278	13093	11297	11354	17556	17556					-0.032702418452117854
LDVGVLPRWV	10	Unmodified	_LDVGVLPRWV_					0	0	0		ENSG00000164363|ENST00000324642|SLC6A18	ENSG00000164363|ENST00000324642|SLC6A18	ENSG00000164363|ENST00000324642|SLC6A18	MSMS	HCT116MG_D190212_S1	1	385.2305603027344	3	385.229119	1152.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.6	1	41.6	41.1	42.1	0								0	0	0	0.96263	1	15668	15668		1.9064	0.1641	1				18279	4694	11298	11355	17557	17557					0.09530284156699054
LDVKRKRKT	9	Unmodified	_LDVKRKRKT_					0	0	0		ENST00000525714.1_1_11:58736525-58746735:-|nuORF;ENST00000533954.5_1_11:58703156-58746777:-|nuORF	ENST00000525714.1_1_11:58736525-58746735:-|nuORF	ENST00000525714.1_1_11:58736525-58746735:-|nuORF	MSMS	HCT116MG_D190212_S3	3	572.3694458007812	2	572.369664	1142.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.534	1	50.22	49.72	50.72	-0.31381								0	0	0	0.76902	1	19058	19058		4.3292	0	1				18280	8581	11299	11356	17558	17558					0.15912180170880674
LDVLKKCV	8	Unmodified	_LDVLKKCV_					0	0	0			REV__ENST00000515207.1_1_5:94872443-94877598:-|nuORF	REV__ENST00000515207.1_1_5:94872443-94877598:-|nuORF	MSMS	HCT116MG_D190212_S3	3	459.28924560546875	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.772	1	48.456	47.956	48.956	-0.31596								0	0	0	0.8837	1	18353	18353		5.2307	2.9279	1		+		18281	14139	11300	11357	17559	17559					0.07996490064863337
LDVLKKCV	8	Unmodified	_LDVLKKCV_					0	0	0			REV__ENST00000515207.1_1_5:94872443-94877598:-|nuORF	REV__ENST00000515207.1_1_5:94872443-94877598:-|nuORF	MSMS	HCT116MG_D190212_S3	3	459.27947998046875	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.802	1	48.486	47.986	48.986	-0.31596								0	0	0	0.8837	1	18363	18363		2.5775	0.51773	1		+		18282	14139	11300	11357	17560	17560					0.07996490064863337
LDVYNSWYRRQ	11	Unmodified	_LDVYNSWYRRQ_					0	0	0			REV__ENSG00000183128|ENST00000369783|CALHM3	REV__ENSG00000183128|ENST00000369783|CALHM3	MSMS	HCT116MG_D190212_S2	2	750.3748168945312	2	750.373132	1498.73171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.497	1	39.419	38.919	39.919	-0.077835								0	0	0	0.95636	1	14867	14867		2.9952	0	1		+		18283	13746	11301	11358	17561	17561					0.0022944826077946345
LDWEGNYFAFY	11	Unmodified	_LDWEGNYFAFY_					0	0	0			REV__nc|ENSG00000122591|Q9BYI3-3|HYCC1	REV__nc|ENSG00000122591|Q9BYI3-3|HYCC1	MSMS	HCT116MG_D190212_S2	2	712.8121948242188	2	712.81151	1423.60847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.533	1	44.448	43.948	44.948	-0.084797								0	0	0	0.94416	1	16915	16915		9.3831	0.63772	1		+		18284	11740	11302	11359	17562	17562					-0.08639227910316549
LDWHRGKPP	9	Unmodified	_LDWHRGKPP_					0	0	0		ENST00000393409.2_1_3:126734079-126734118:+|nuORF	ENST00000393409.2_1_3:126734079-126734118:+|nuORF	ENST00000393409.2_1_3:126734079-126734118:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2990112304688	2	553.298707	1104.58286	0.38458	0.00021279	-0.58794	-0.0003253	-0.20336	-0.00011252	553.2985109758847	27.991	0.4165	27.803	27.569	27.985	-0.18847					10	7	2	0	0	0	0.47413	1	10166	10166		13.906	0	1	5988200			18285	7624	11303	11360	17563	17563					0.03475387148569098
LDYDEDEDDYE	11	Unmodified	_LDYDEDEDDYE_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MULTI-SECPEP	HCT116MG_D190212_S1	1	474.74127197265625	3	474.168537	1419.48378	0.16631	7.8858E-05	-1.3405	-0.00063563	-1.1742	-0.00055677	474.1681096782351	18.498	0.20825	18.498	18.35	18.558	0					5	3	2	0	0	0	0.36598	1	6339	6339		2.6312	2.223	1	1374200	+		18286	11602	11304	11361	17564	17564					-0.20918234698842753
LDYDEDEDDYE	11	Unmodified	_LDYDEDEDDYE_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MULTI-SECPEP	HCT116MG_D190212_S2	2	474.74066162109375	3	474.168537	1419.48378	0.095662	4.536E-05	-0.80581	-0.00038209	-0.71015	-0.00033673	474.50280118367675	18.993	0.41721	18.623	18.471	18.888	-0.3695					13	7	3	0	0	0	0.36563	1	6602	6602		1.1098	0	1	3515500	+		18287	11602	11304	11361	17565	17565					-0.20918234698842753
LDYKIFYYEIP	11	Unmodified	_LDYKIFYYEIP_					0	0	0		ENST00000493315.1_1_2:63631156-63711794:-|nuORF;WDPCP|p.I501Yfs*10|1|0.04|ENSG00000143951|chr2:63382029-63382030|-/GAGTTTTGTATATA|frameshift_variant;nc|ENSG00000143951|O95876-3|WDPCP;nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	ENST00000493315.1_1_2:63631156-63711794:-|nuORF	ENST00000493315.1_1_2:63631156-63711794:-|nuORF	MSMS	HCT116MG_D190212_S2	2	732.3748779296875	2	732.376486	1462.73842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.328	1	49.174	48.674	49.674	-0.15405								0	0	0	0.95196	1	18875	18875		5.2969	0.76802	1				18288	3841	11305	11362	17566	17566					0.025559483688084583
LDYKVLFILL	10	Unmodified	_LDYKVLFILL_					0	0	0			REV__ENST00000461162.5_1_9:95887192-95893805:-|nuORF	REV__ENST00000461162.5_1_9:95887192-95893805:-|nuORF	MSMS	HCT116MG_D190212_S3	3	618.9334716796875	2	618.88375	1235.75295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.43	1	51.118	50.618	51.618	-0.31166								0	0	0	0.95648	1	19418	19418		3.2813	0.54611	1		+		18289	11965	11306	11363	17567	17567					0.14450065307619298
LEAEIATY	8	Unmodified	_LEAEIATY_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S1	1	909.4569091796875	1	909.45639	908.449113	0.57682	0.00052459	0.13769	0.00012522	0.7145	0.00064981	909.4562523160007	40.202	0.31065	40.202	40.021	40.332	0					8	5	2	0	0	0	0.10511	1	15105	15105		93.883	30.321	1	36530000			18290	2271	11307	11364	17568	17568					-0.008773164676540546
LEAEIATY	8	Unmodified	_LEAEIATY_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S2	2	909.4569091796875	1	909.45639	908.449113	0.79083	0.00071923	0.25119	0.00022845	1.042	0.00094768	909.4563268502344	40.253	0.56969	40.18	39.998	40.567	-0.072838					25	10	4	0	0	0	0.065436	1	15175	15175		106.85	43.283	1	213440000			18291	2271	11307	11364	17569	17569					-0.008773164676540546
LEAEIATY	8	Unmodified	_LEAEIATY_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S3	3	909.4576416015625	1	909.45639	908.449113	0.69955	0.00063621	0.19913	0.0001811	0.89869	0.00081732	909.4564577645801	40.49	0.52054	40.189	40.007	40.528	-0.30161					22	9	4	0	0	0	0.10511	1	15017	15017		93.883	19.487	1	71822000			18292	2271	11307	11364	17570	17570					-0.008773164676540546
LEAEIATY	8	Unmodified	_LEAEIATY_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S4	4	909.45703125	1	909.45639	908.449113	0.74627	0.0006787	0.098381	8.9473E-05	0.84465	0.00076817	909.4563934553129	40.554	0.53383	40.176	39.988	40.522	-0.37828					20	10	3	0	0	0	0.10511	1	14875	14875		93.883	34.088	1	20770000			18293	2271	11307	11364	17571	17571					-0.008773164676540546
LEALIAHF	8	Unmodified	_LEALIAHF_					0	0	0		ENST00000568338.1_1_16:87791029-87795640:-|nuORF;KLHDC4|p.P61Tfs*14|1|0.27|ENSG00000104731|chr16:87761960-87761961|-/G|frameshift_variant;KLHDC4|p.R361Qfs*9|1|0.36|ENSG00000104731|chr16:87709632-87709633|-/C|frameshift_variant;KLHDC4|p.R412Gfs*28|1|0.34|ENSG00000104731|chr16:87709478-87709478|G/-|frameshift_variant;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000568338.1_1_16:87791029-87795640:-|nuORF	ENST00000568338.1_1_16:87791029-87795640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	457.26080322265625	2	457.260728	912.506903	0.27612	0.00012626	-0.038436	-1.7575E-05	0.23768	0.00010868	457.26059917125673	52.508	0.30919	52.321	52.142	52.451	-0.18725					8	5	2	0	0	0	0.29313	1	20178	20178		59.795	8.9402	1	13880000			18294	1948	11308	11365	17572	17572					0.04714990248419326
LEALYRLQRGL	11	Unmodified	_LEALYRLQRGL_					0	0	0			REV__TUBGCP6|p.E1173Sfs*151|1|0.26|ENSG00000128159|chr22:50220842-50220842|C/-|frameshift_variant;REV__TUBGCP6|p.L881Cfs*77|1|0.21|ENSG00000128159|chr22:50221719-50221719|C/-|frameshift_variant	REV__TUBGCP6|p.L881Cfs*77|1|0.21|ENSG00000128159|chr22:50221719-50221719|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	666.3911743164062	2	666.393336	1330.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.679	1	41.303	40.803	41.803	-0.37637								0	0	0	0.95196	1	15294	15294		5.2969	0	1		+		18295	18031;18032	11309	11366	17573	17573					0.11996414651207488
LEAMDELEVA	10	Unmodified	_LEAMDELEVA_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	559.9347534179688	2	560.265547	1118.51654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.264	1	24.006	23.506	24.506	-0.25816								0	0	0	0.88261	1	8540	8540		18.146	0	1				18296	19;1337	11310	11367	17574	17574					-0.0379765431900978
LEAPGVYVF	9	Unmodified	_LEAPGVYVF_					0	0	0		COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A;ENST00000466901.5_1_2:232653280-232656595:+|nuORF;ENST00000492423.5_1_2:232651186-232653667:+|nuORF;nc|ENSG00000144524|Q9H9Q2-3|COPS7B;ENSG00000144524|ENST00000350033|COPS7B	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000144524|ENST00000350033|COPS7B	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	994.52490234375	1	994.52441	993.517133	0.75847	0.00075432	0.21486	0.00021369	0.97334	0.00096801	994.5243304505772	56.209	0.20609	56.026	55.898	56.104	-0.18261					9	3	3	0	0	0	0.043314	1	21689	21689		77.984	31.063	1	69345000			18297	588;3865	11311	11368	17575	17575					0.020115531829901556
LEAPGVYVF	9	Unmodified	_LEAPGVYVF_					0	0	0		COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A;ENST00000466901.5_1_2:232653280-232656595:+|nuORF;ENST00000492423.5_1_2:232651186-232653667:+|nuORF;nc|ENSG00000144524|Q9H9Q2-3|COPS7B;ENSG00000144524|ENST00000350033|COPS7B	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000144524|ENST00000350033|COPS7B	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	994.5255126953125	1	994.52441	993.517133	0.68065	0.00067692	0.38364	0.00038154	1.0643	0.0010585	994.5247004286211	56.355	0.20956	56.071	55.94	56.15	-0.28367					8	3	3	0	0	0	0.1037	1	21394	21394		57.471	19.32	1	6450500			18298	588;3865	11311	11368	17576	17576					0.020115531829901556
LEAPGVYVF	9	Unmodified	_LEAPGVYVF_					0	0	0		COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000111652|ENST00000543155|COPS7A;ENST00000466901.5_1_2:232653280-232656595:+|nuORF;ENST00000492423.5_1_2:232651186-232653667:+|nuORF;nc|ENSG00000144524|Q9H9Q2-3|COPS7B;ENSG00000144524|ENST00000350033|COPS7B	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant;ENSG00000144524|ENST00000350033|COPS7B	COPS7A|p.T219Pfs*21|2|0.21|ENSG00000111652|chr12:6730681-6730681|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	994.5258178710938	1	994.52441	993.517133	0.75773	0.00075358	0.40046	0.00039827	1.1582	0.0011519	994.5245234485208	56.357	0.21104	56.05	55.937	56.148	-0.30626					8	3	3	0	0	0	0.043314	1	21133	21133		77.984	37.536	1	3522500			18299	588;3865	11311	11368	17577	17577					0.020115531829901556
LEAPQDVQP	9	Unmodified	_LEAPQDVQP_					0	0	0			REV__ENST00000259239.7_1_2:131099896-131100070:+|nuORF	REV__ENST00000259239.7_1_2:131099896-131100070:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	498.7591552734375	2	498.753464	995.492375	0.33674	0.00016795	-0.95484	-0.00047623	-0.61811	-0.00030828	498.7529346459718	34.593	0.35609	34.208	34.035	34.392	-0.38558					17	6	4	0	0	0	0.24195	1	12710	12710		13.906	2.4113	1	41305000	+		18300	14619	11312	11369	17578	17578					-0.0055512669038080276
LEAQEYHLY	9	Unmodified	_LEAQEYHLY_					0	0	0		ENST00000444199.1_1_19:55208384-55209490:+|nuORF	ENST00000444199.1_1_19:55208384-55209490:+|nuORF	ENST00000444199.1_1_19:55208384-55209490:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	583.2797241210938	2	583.279846	1164.54514	0.44094	0.00025719	-0.016	-9.3325E-06	0.42494	0.00024786	583.2799167623142	38.855	0.25985	38.77	38.597	38.857	-0.084618					6	4	2	0	0	0	0.35128	1	14638	14638		25.399	1.3787	1	12153000			18301	7943	11313	11370	17579	17579					-0.03055168627565763
LEAQEYHLY	9	Unmodified	_LEAQEYHLY_					0	0	0		ENST00000444199.1_1_19:55208384-55209490:+|nuORF	ENST00000444199.1_1_19:55208384-55209490:+|nuORF	ENST00000444199.1_1_19:55208384-55209490:+|nuORF	MSMS	HCT116MG_D190212_S3	3	583.2801513671875	2	583.279846	1164.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.174	1	38.872	38.372	39.372	-0.30137								0	0	0	0.56943	1	14536	14536		25.399	2.663	1				18302	7943	11313	11370	17580	17580					-0.03055168627565763
LEAQMNAVEL	10	Unmodified	_LEAQMNAVEL_					0	0	0			REV__APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant;REV__APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant	REV__APOB|p.A2932Pfs*19|1|0.36|ENSG00000084674|chr2:21008074-21008074|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	558.9716796875	2	559.281531	1116.54851	0.64152	0.00035879	-0.64288	-0.00035955	-0.0013643	-7.6305E-07	559.2814381854341	44.662	0.26268	44.578	44.428	44.691	-0.084797					8	4	3	0	0	0	0.77749	1	16912	16912		13.906	2.2658	1	12534000	+		18303	9964;9965	11314	11371	17581	17581					-0.005102418451997437
LEAQMNDQD	9	Unmodified	_LEAQMNDQD_					0	0	0			REV__KIF5B|p.N475K|1|0.21|ENSG00000170759|chr10:32031229-32031229|A/T|missense_variant	REV__KIF5B|p.N475K|1|0.21|ENSG00000170759|chr10:32031229-32031229|A/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1063.438720703125	1	1063.43607	1062.42879	0.65244	0.00069383	0.86593	0.00092086	1.5184	0.0016147	1063.4374761127237	43.416	0.25737	43.111	42.984	43.241	-0.30472					7	4	2	0	0	0	0.14171	1	16240	16240		49.933	7.9774	1	6177100	+		18304	13314	11315	11372	17582	17582					-0.0999285518976194
LEAQVVLLLL	10	Unmodified	_LEAQVVLLLL_					0	0	0		ENST00000374500.9_1_6:33385387-33385937:-|nuORF	ENST00000374500.9_1_6:33385387-33385937:-|nuORF	ENST00000374500.9_1_6:33385387-33385937:-|nuORF	MSMS	HCT116MG_D190212_S2	2	555.8591918945312	2	555.860275	1109.706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.203	1	45.111	44.611	45.611	-0.092472								0	0	0	0.89062	1	17184	17184		17.113	0	1				18305	7497	11316	11373	17583	17583					0.15553205756486932
LEAVISDRR	9	Unmodified	_LEAVISDRR_					0	0	0			REV__ENST00000597026.5_1_19:19017767-19023834:-|nuORF	REV__ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	529.8014526367188	2	529.80128	1057.58801	0.50469	0.00026739	-0.37501	-0.00019868	0.12968	6.8706E-05	529.8012986579914	33.115	0.45035	33.115	32.794	33.244	0					18	8	3	0	0	0	0.26536	1	12266	12266		34.402	1.616	1	23147000	+		18306	11263	11317	11374	17584	17584					0.06151646220519069
LECAQKAAELR	11	Unmodified	_LECAQKAAELR_					0	0	0		RPGRIP1|p.I758Hfs*10|1|0.36|ENSG00000092200|chr14:21325283-21325284|-/C|frameshift_variant;RPGRIP1|p.N899Mfs*38|1|0.52|ENSG00000092200|chr14:21326154-21326154|A/-|frameshift_variant;ENSG00000092200|ENST00000400017|RPGRIP1	RPGRIP1|p.I758Hfs*10|1|0.36|ENSG00000092200|chr14:21325283-21325284|-/C|frameshift_variant	RPGRIP1|p.I758Hfs*10|1|0.36|ENSG00000092200|chr14:21325283-21325284|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	616.2939453125	2	616.326805	1230.63906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.579	1	33.386	32.886	33.886	-0.19297								0	0	0	0.94385	1	12465	12465		9.544	0.16085	1				18307	1577	11318	11375	17585	17585					0.03296227203054514
LECEPPQRP	9	Unmodified	_LECEPPQRP_					0	0	0		PGBD1|p.K169E|1|0.15|ENSG00000137338|chr6:28285659-28285659|A/G|missense_variant	PGBD1|p.K169E|1|0.15|ENSG00000137338|chr6:28285659-28285659|A/G|missense_variant	PGBD1|p.K169E|1|0.15|ENSG00000137338|chr6:28285659-28285659|A/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	534.7398681640625	2	534.760766	1067.50698	0.40597	0.0002171	-3.5961	-0.0019231	-3.1901	-0.001706	535.2605910238642	16.329	0.36533	15.987	15.839	16.204	-0.34183					6	4	2	0	0	0	0.24622	1	5453	5453		16.942	3.0362	1	10015000			18308	9744	11319	11376	17586	17586					-0.024073778138927082
LEDELSLLDP	10	Unmodified	_LEDELSLLDP_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MSMS	HCT116MG_D190212_S4	4	572.2924194335938	2	572.292619	1142.57069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.552	1	29.203	28.703	29.703	-0.34921								0	0	0	0.90023	1	10677	10677		15.847	1.0089	1				18309	851	11320	11377	17587	17587					0.005102611042048011
LEDFLYHEGY	10	Unmodified	_LEDFLYHEGY_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	HCT116MG_D190212_S1	1	643.7921752929688	2	643.290411	1284.56627	0.53121	0.00034172	0.10861	6.9865E-05	0.63982	0.00041159	643.7918032977766	48.485	0.30868	48.485	48.306	48.614	0					13	5	3	0	0	0	0.010342	1	18453	18453		147.06	113.61	1	37216000			18310	655	11321	11378	17588	17588					-0.0646320331870811
LEDFLYHEGY	10	Unmodified	_LEDFLYHEGY_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MATCH	HCT116MG_D190212_S3	3		2	643.290411	1284.56627	0.88588	0.00056988	1.6833	0.0010828	2.5691	0.0016527	643.2905607716065	48.834	0.25722	48.518	48.348	48.605	-0.31596	0.016556	0.0019707	NaN	147.06	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4192900			18311	655	11321	11378							-0.0646320331870811
LEDILPFLLKQ	11	Unmodified	_LEDILPFLLKQ_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MSMS	HCT116MG_D190212_S1	1	664.8961181640625	2	664.894846	1327.77514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.54	1	32.54	32.04	33.04	0								0	0	0	0.95273	1	12011	12011		4.897	0.95262	1				18312	1517	11322	11379	17589	17589					0.12436244985383382
LEDLAVSLTV	10	Unmodified	_LEDLAVSLTV_					0	0	0		CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant;CASP8AP2|p.D1810Mfs*3|1|0.43|ENSG00000118412|chr6:89868711-89868711|A/-|frameshift_variant;CASP8AP2|p.N1917Kfs*4|1|0.24|ENSG00000118412|chr6:89869034-89869035|-/A|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	CASP8AP2|p.E1628Mfs*58|1|0.49|ENSG00000118412|chr6:89868163-89868164|-/AT|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.7852783203125	2	530.300247	1058.58594	0.52941	0.00028075	-0.42202	-0.0002238	0.10739	5.6948E-05	530.299850843898	41.835	0.31181	41.767	41.549	41.861	-0.068195					7	5	2	0	0	0	0.30526	1	15772	15772		6.2058	0	1	8572100			18313	329	11323	11380	17590	17590					0.058991726920339715
LEDMFIICP	9	Unmodified	_LEDMFIICP_					0	0	0			REV__ENST00000504847.1_1_5:33971458-33972451:+|nuORF	REV__ENST00000504847.1_1_5:33971458-33972451:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	540.2435302734375	2	540.758846	1079.50314	0.31653	0.00017117	0.84414	0.00045647	1.1607	0.00062764	540.7590904882159	30.749	0.15554	30.482	30.353	30.508	-0.26704					4	2	2	0	0	0	0.19551	1	11286	11286		34.102	0	1	5449700	+		18314	16133	11324	11381	17591	17591					-0.03343183631932334
LEDTHKQL	8	Unmodified	_LEDTHKQL_					0	0	0		nc|ENSG00000161973|Q96M95-2|CCDC42;ENSG00000161973|ENST00000293845|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	MULTI-MSMS	HCT116MG_D190212_S1	1	492.2615051269531	2	492.261456	982.50836	0.36429	0.00017933	0.33359	0.00016421	0.69788	0.00034354	492.2613380634878	33.705	0.20712	33.705	33.556	33.763	0					5	3	2	0	0	0	0.49192	1	12503	12503		41.84	5.7126	1	5230800			18315	4502	11325	11382	17592	17592					0.016405795465175288
LEDVSKPPA	9	Unmodified	_LEDVSKPPA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	478.25830078125	2	478.258382	954.502212	0.38238	0.00018288	-0.35344	-0.00016903	0.02894	1.3841E-05	478.25816810283277	24.333	0.67621	23.953	23.563	24.239	-0.38003					21	12	3	0	0	0	0.030039	1	8737	8737		86.332	27.653	1	27795000			18316	5653	11326	11383	17593	17593					0.02314061314996252
LEDVSKPPA	9	Unmodified	_LEDVSKPPA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	478.2586669921875	2	478.258382	954.502212	0.10632	5.0849E-05	0.1873	8.9578E-05	0.29362	0.00014043	478.2584207612128	24.029	0.62531	23.967	23.53	24.155	-0.061449					22	11	3	0	0	0	0.066823	1	8487	8487		66.457	20.436	1	11727000			18317	5653	11326	11383	17594	17594					0.02314061314996252
LEDVSKPPA	9	Unmodified	_LEDVSKPPA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	478.258544921875	2	478.258382	954.502212	0.59503	0.00028458	-0.30073	-0.00014383	0.2943	0.00014075	478.25808891077367	24.239	0.25957	23.981	23.833	24.093	-0.25816					7	4	2	0	0	0	0.49914	1	8529	8529		16.942	3.8998	1	2335800			18318	5653	11326	11383	17595	17595					0.02314061314996252
LEDVSKPPA	9	Unmodified	_LEDVSKPPA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R1595Gfs*18|1|0.42|ENSG00000182095|chr7:5359449-5359449|C/-|frameshift_variant;TNRC18|p.R1786Gfs*3|1|0.14|ENSG00000182095|chr7:5351933-5351933|G/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	478.258382	954.502212	0.20189	9.6555E-05	-0.051023	-2.4402E-05	0.15086	7.2152E-05	478.25841457662887	23.952	0.47043	23.952	23.627	24.098	0	-0.010744	-2.6032E-05	NaN	86.332	11	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4204500			18319	5653	11326	11383							0.02314061314996252
LEDVTHKF	8	Unmodified	_LEDVTHKF_					0	0	0		IPMK|p.K129Q|1|0.2|ENSG00000151151|chr10:58216306-58216306|T/G|missense_variant;ENSG00000151151|ENST00000373935|IPMK	IPMK|p.K129Q|1|0.2|ENSG00000151151|chr10:58216306-58216306|T/G|missense_variant	IPMK|p.K129Q|1|0.2|ENSG00000151151|chr10:58216306-58216306|T/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	495.2202453613281	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.64	1	29.339	28.839	29.839	-0.30095								0	0	0	0.55695	1	10865	10865		39.95	5.8473	1				18320	4103	11327	11384	17596	17596					0.00829481034861601
LEDVTKAI	8	Unmodified	_LEDVTKAI_					0	0	0			REV__LRRN1|p.N168Ifs*3|3|0.27|ENSG00000175928|chr3:3845139-3845139|A/-|frameshift_variant	REV__LRRN1|p.N168Ifs*3|3|0.27|ENSG00000175928|chr3:3845139-3845139|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	444.7554931640625	2	444.755475	887.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.421	1	41.119	40.619	41.619	-0.30185								0	0	0	0.8837	1	15409	15409		14.582	1.0738	1		+		18321	13532	11328	11385	17597	17597					0.04814962803345679
LEDVVRAY	8	Unmodified	_LEDVVRAY_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MSMS	HCT116MG_D190212_S3	3	482.7581787109375	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.649	1	35.349	34.849	35.849	-0.29922								0	0	0	0.73727	1	13147	13147		27.629	0.74515	1				18322	2119	11329	11386	17598	17598					0.019334810348595965
LEEAPTYNS	9	Unmodified	_LEEAPTYNS_					0	0	0			REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2328491210938	2	512.235104	1022.45566	0.44456	0.00022772	-1.0182	-0.00052157	-0.57366	-0.00029385	512.2323557491588	34.525	0.57176	34.525	34.233	34.804	0					19	10	3	0	0	0	0.66792	1	12813	12813		7.2892	0.56607	1	18546000	+		18323	17770	11330	11387	17599	17599					-0.05467423306959063
LEEAPTYNS	9	Unmodified	_LEEAPTYNS_					0	0	0			REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	REV__tr|U7SSK6|U7SSK6_FUSNUSigma-BregulationproteinRsbU(Phosphoserinephosphatase)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01485PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	512.235104	1022.45566	0.44456	0.00022772	-1.0182	-0.00052157	-0.57366	-0.00029385	512.2323557491588	34.525	0.57176	34.525	34.233	34.804	0	0	0	NaN	7.2892	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18546000	+		18324	17770	11330	11387							-0.05467423306959063
LEEFALELE	9	Unmodified	_LEEFALELE_					0	0	0			REV__ENSG00000178404|ENST00000322630|CEP295NL	REV__ENSG00000178404|ENST00000322630|CEP295NL	MULTI-MSMS	HCT116MG_D190212_S1	1	364.8536376953125	3	364.853495	1091.53866	-0.056908	-2.0763E-05	0.79835	0.00029128	0.74144	0.00027052	364.8537977682091	42.02	0.26122	42.02	41.81	42.071	0					7	4	2	0	0	0	0.51829	1	15853	15853		10.8	0	1	12846000	+		18325	13604	11331	11388	17600	17600					-0.00345106578947707
LEEKEKMTK	9	Unmodified	_LEEKEKMTK_					0	0	0			REV__TAX1BP1|p.L352*|1|0.16|ENSG00000106052|chr7:27792017-27792017|T/-|frameshift_variant	REV__TAX1BP1|p.L352*|1|0.16|ENSG00000106052|chr7:27792017-27792017|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	379.20721435546875	3	379.205763	1134.59546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.197	1	16.197	15.697	16.697	0								0	0	0	0.76818	1	5434	5434		4.5289	1.2092	1		+		18326	11284	11332	11389	17601	17601					0.03354617705917917
LEELATPEIP	10	Unmodified	_LEELATPEIP_					0	0	0			REV__ENST00000441188.2_1_X:92477682-92478501:-|nuORF	REV__ENST00000441188.2_1_X:92477682-92478501:-|nuORF	MSMS	HCT116MG_D190212_S3	3	556.2971801757812	2	556.297704	1110.58086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.101	1	34.804	34.304	35.304	-0.29707								0	0	0	0.90892	1	12944	12944		13.906	3.8321	1		+		18327	15647	11333	11390	17602	17602					0.02998868829422463
LEELKLEKKSR	11	Unmodified	_LEELKLEKKSR_					0	0	0		UBASH3A|p.I503Sfs*25|1|0.3|ENSG00000160185|chr21:42442466-42442466|A/-|frameshift_variant	UBASH3A|p.I503Sfs*25|1|0.3|ENSG00000160185|chr21:42442466-42442466|A/-|frameshift_variant	UBASH3A|p.I503Sfs*25|1|0.3|ENSG00000160185|chr21:42442466-42442466|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	687.392822265625	2	686.911559	1371.80856	0.69227	0.00047553	0.78642	0.0005402	1.4787	0.0010157	686.9119907659293	52.127	0.66984	51.942	51.627	52.297	-0.18586					15	12	2	0	0	0	0.35538	1	19945	19945		18.146	9.9908	1	17240000			18328	18675	11334	11391	17603	17603					0.1375324675725551
LEELKLWAL	9	Unmodified	_LEELKLWAL_					0	0	0			REV__ENST00000318407.4_1_2:242512778-242512907:+|nuORF	REV__ENST00000318407.4_1_2:242512778-242512907:+|nuORF	MSMS	HCT116MG_D190212_S4	4	372.22271728515625	3	372.221742	1113.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.504	1	34.118	33.618	34.618	-0.38558								0	0	0	0.76886	1	12601	12601		4.897	0	1		+		18329	14874	11335	11392	17604	17604					0.09112059688254703
LEEQFEKEKEK	11	Unmodified	_LEEQFEKEKEK_					0	0	0			REV__CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant	REV__CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	718.8665161132812	2	718.867014	1435.71947	0.59168	0.00042534	-0.65815	-0.00047312	-0.066471	-4.7784E-05	718.8665849066621	51.981	0.29224	51.671	51.489	51.781	-0.30927					8	5	2	0	0	0	0.69673	1	19658	19658		34.932	5.8505	1	14185000	+		18330	10151	11336	11393	17605	17605					0.019043670070686858
LEEQFEKEKEK	11	Unmodified	_LEEQFEKEKEK_					0	0	0			REV__CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant	REV__CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	718.866943359375	2	718.867014	1435.71947	0.78237	0.00056242	-0.64269	-0.00046201	0.13968	0.00010041	718.8663598007049	51.994	0.20607	51.648	51.519	51.725	-0.34538					6	3	2	0	0	0	0.69345	1	19382	19382		35.612	6.5307	1	17805000	+		18331	10151	11336	11393	17606	17606					0.019043670070686858
LEERRYPG	8	Unmodified	_LEERRYPG_					0	0	0		MYT1L|p.K877Rfs*3|1|0.06|ENSG00000186487|chr2:1887500-1887500|T/-|frameshift_variant;nc|ENSG00000186487|Q9UL68-4|MYT1L;ENSG00000186487|ENST00000647738|MYT1L	MYT1L|p.K877Rfs*3|1|0.06|ENSG00000186487|chr2:1887500-1887500|T/-|frameshift_variant	MYT1L|p.K877Rfs*3|1|0.06|ENSG00000186487|chr2:1887500-1887500|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	510.266845703125	2	510.267073	1018.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.417	1	14.098	13.598	14.598	-0.31952								0	0	0	0.8837	1	4718	4718		5.7604	0	1				18332	5890	11337	11394	17607	17607					0.011074016406723786
LEFLHENEY	9	Unmodified	_LEFLHENEY_					0	0	0		ENST00000600284.5_1_19:50490096-50500767:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3;ENST00000594090.5_1_19:50491627-50519408:-|nuORF;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	ENST00000600284.5_1_19:50490096-50500767:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	597.2924194335938	2	597.277303	1192.54005	0.45661	0.00027272	1.004	0.00059965	1.4606	0.00087237	597.2775352611521	44.081	0.20497	44.003	43.916	44.121	-0.078373					7	3	3	0	0	0	0.046753	1	16740	16740		93.938	37.761	1	11215000			18333	1977	11338	11395	17608	17608					-0.04851472490190645
LEFYIKKIIMS	11	Unmodified	_LEFYIKKIIMS_					0	0	0		ENST00000405123.7_1_2:54014321-54021524:+|nuORF	ENST00000405123.7_1_2:54014321-54021524:+|nuORF	ENST00000405123.7_1_2:54014321-54021524:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	692.898681640625	2	692.899074	1383.7836	0.85795	0.00059447	-1.0256	-0.00071062	-0.16762	-0.00011614	692.8981187594798	53.402	0.97643	53.402	52.948	53.924	0					26	18	2	0	0	0	0.74191	1	20467	20467		2.2828	0.19677	1	23348000			18334	7708	11339	11396	17609	17609					0.10705475630356887
LEGENESGF	9	Unmodified	_LEGENESGF_					0	0	0			REV__PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant	REV__PDZD4|p.R379Gfs*28|1|0.45|ENSG00000067840|chrX:153804528-153804528|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	490.7507019042969	2	491.211629	980.408705	0.61212	0.00030068	0.57718	0.00028352	1.1893	0.0005842	491.21182685916847	43.64	0.30846	43.563	43.455	43.764	-0.076378					9	5	2	0	0	0	0.24622	1	16544	16544		7.2892	0	1	7822300	+		18335	10732	11340	11397	17610	17610					-0.0822828285806736
LEGITAII	8	Unmodified	_LEGITAII_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MSMS	HCT116MG_D190212_S1	1	415.2539978027344	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.864	1	44.864	44.364	45.364	0								0	0	0	0.8837	1	16983	16983		2.5775	0	1				18336	1427	11341	11398	17611	17611					0.07456168154271836
LEGLEKLEILD	11	Unmodified	_LEGLEKLEILD_					0	0	0		nc|ENSG00000164342|O15455-2|TLR3;ENSG00000164342|ENST00000296795|TLR3	nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MSMS	HCT116MG_D190212_S2	2	636.3609619140625	2	636.358293	1270.70203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.559	1	56.377	55.877	56.877	-0.18261								0	0	0	0.93717	1	21826	21826		13.042	0	1				18337	4692	11342	11399	17612	17612					0.07751071472102922
LEGLVISV	8	Unmodified	_LEGLVISV_					0	0	0		ENSG00000011638|ENST00000233047|LDAF1;nc|ENSG00000011638|Q96B96-2|LDAF1	ENSG00000011638|ENST00000233047|LDAF1	ENSG00000011638|ENST00000233047|LDAF1	MSMS	HCT116MG_D190212_S3	3	415.25372314453125	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.67	1	61.432	60.932	61.932	-0.2387								0	0	0	0.8837	1	23542	23542		2.5775	0	1				18338	901	11343	11400	17613	17613					0.07456168154283205
LEGPPAPL	8	Unmodified	_LEGPPAPL_					0	0	0		PLXNB1|p.L900Sfs*25|1|0.11|ENSG00000164050|chr3:48419592-48419592|G/-|frameshift_variant;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1	PLXNB1|p.L900Sfs*25|1|0.11|ENSG00000164050|chr3:48419592-48419592|G/-|frameshift_variant	PLXNB1|p.L900Sfs*25|1|0.11|ENSG00000164050|chr3:48419592-48419592|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	397.225830078125	2	397.226354	792.438155	-0.082867	-3.2917E-05	-0.85441	-0.0003394	-0.93728	-0.00037231	397.22594097475513	34.408	0.31205	34.113	33.923	34.236	-0.29419					11	5	3	0	0	0	0.64761	1	12686	12686		28.173	0	1	8355700			18339	4660	11344	11401	17614	17614					0.03363325948714646
LEGSEVFP	8	Unmodified	_LEGSEVFP_					0	0	0			REV__ENST00000374490.7_1_1:24128417-24128612:-|nuORF	REV__ENST00000374490.7_1_1:24128417-24128612:-|nuORF	MSMS	HCT116MG_D190212_S4	4	439.2184143066406	2	439.218726	876.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.486	1	49.124	48.624	49.624	-0.36213								0	0	0	0.8837	1	18357	18357		6.3541	0.59368	1		+		18340	15202	11345	11402	17615	17615					-0.020255856391372618
LEGSFFSIQ	9	Unmodified	_LEGSFFSIQ_					0	0	0			REV__ENST00000392845.7_1_3:155560378-155571161:-|nuORF	REV__ENST00000392845.7_1_3:155560378-155571161:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	514.2587890625	2	514.258382	1026.50221	0.3461	0.00017798	-0.45317	-0.00023305	-0.10707	-5.5063E-05	514.2579983377725	48.378	0.20845	48.062	47.932	48.14	-0.31596					5	3	2	0	0	0	0.24895	1	18212	18212		36.127	7.0454	1	2572100	+		18341	15318	11346	11403	17616	17616					-0.009979386849863658
LEHDAQAVY	9	Unmodified	_LEHDAQAVY_					0	0	0			REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	523.2510375976562	2	523.251089	1044.48762	0.40291	0.00021083	-0.68879	-0.00036041	-0.28588	-0.00014959	523.250646705119	25.768	0.41826	25.768	25.509	25.927	0					15	7	3	0	0	0	0.35128	1	9309	9309		25.399	4.9457	1	6746200	+		18342	15789	11347	11404	17617	17617					-0.032840108331583906
LEHDAQAVY	9	Unmodified	_LEHDAQAVY_					0	0	0			REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	523.251220703125	2	523.251089	1044.48762	0.59752	0.00031265	-0.070948	-3.7124E-05	0.52658	0.00027553	523.2509745460187	26.153	0.31096	25.792	25.662	25.972	-0.36164					11	5	3	0	0	0	0.14171	1	9458	9458		49.933	3.912	1	44744000	+		18343	15789	11347	11404	17618	17618					-0.032840108331583906
LEHDAQAVY	9	Unmodified	_LEHDAQAVY_					0	0	0			REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	523.2509155273438	2	523.251089	1044.48762	0.32279	0.0001689	-0.71058	-0.00037181	-0.38778	-0.00020291	523.2506918752504	26.196	0.26032	25.906	25.724	25.984	-0.29022					8	4	2	0	0	0	0.35128	1	9322	9322		25.399	0.72543	1	4244900	+		18344	15789	11347	11404	17619	17619					-0.032840108331583906
LEHDAQAVY	9	Unmodified	_LEHDAQAVY_					0	0	0			REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	523.251089	1044.48762	0.40291	0.00021083	-0.68879	-0.00036041	-0.28588	-0.00014959	523.250646705119	25.768	0.41826	25.768	25.509	25.927	0	-0.048663	-0.00025854	NaN	49.933	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6746200	+		18345	15789	11347	11404							-0.032840108331583906
LEHDAQAVY	9	Unmodified	_LEHDAQAVY_					0	0	0			REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	523.251089	1044.48762	0.59752	0.00031265	-0.070948	-3.7124E-05	0.52658	0.00027553	523.2509745460187	26.153	0.31096	25.792	25.662	25.972	-0.36164	-0.02476	0.00038803	NaN	49.933	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44744000	+		18346	15789	11347	11404							-0.032840108331583906
LEHDAQAVY	9	Unmodified	_LEHDAQAVY_					0	0	0			REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	REV__ENST00000461972.5_1_2:24303770-24310224:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	523.251089	1044.48762	0.32279	0.0001689	-0.71058	-0.00037181	-0.38778	-0.00020291	523.2506918752504	26.196	0.26032	25.906	25.724	25.984	-0.29022	0.089586	-0.00028134	NaN	49.933	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4244900	+		18347	15789	11347	11404							-0.032840108331583906
LEHEGYKY	8	Unmodified	_LEHEGYKY_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.E1094K|1|0.17|ENSG00000111642|chr12:6591526-6591526|C/T|missense_variant;ENST00000537634.1_1_12:6700611-6701611:-|nuORF	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7483520507812	2	519.748182	1037.48181	0.25083	0.00013037	-0.066317	-3.4468E-05	0.18452	9.5902E-05	519.7481440897803	23.085	0.20813	22.7	22.57	22.778	-0.3852					5	3	2	0	0	0	0.079196	1	8220	8220		99.799	59.842	1	14247000			18348	428	11348	11405	17620	17620					-0.03543109344786899
LEHEGYKY	8	Unmodified	_LEHEGYKY_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.E1094K|1|0.17|ENSG00000111642|chr12:6591526-6591526|C/T|missense_variant;ENST00000537634.1_1_12:6700611-6701611:-|nuORF	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	520.2217407226562	2	519.748182	1037.48181	0.24935	0.0001296	-0.348	-0.00018087	-0.098652	-5.1274E-05	520.2498796251883	22.38	0.2607	22.38	22.198	22.459	0.00074577					6	4	2	0	0	0	0.26171	1	7856	7856		22.736	5.794	1	3051500			18349	428	11348	11405	17621	17621					-0.03543109344786899
LEHEYIHNF	9	Unmodified	_LEHEYIHNF_					0	0	0		nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2;ENST00000481222.5_1_2:27224957-27246540:+|nuORF;MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant;nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000084764|Q9UPY8-2|MAPRE3;ENSG00000084764|ENST00000233121|MAPRE3	nc|ENSG00000166974|Q15555-4|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	MULTI-SECPEP	HCT116MG_D190212_S2	2	601.786865234375	2	601.285463	1200.55637	0.87927	0.00052869	-0.87052	-0.00052343	0.0087455	5.2586E-06	601.2848235786423	34.718	0.36235	34.56	34.399	34.761	-0.15834					8	6	2	0	0	0	1.6983E-07	1	12945	12945		174.73	117.01	1	27748000			18350	4896	11349	11406	17622	17622					-0.035883465334336506
LEHEYIHNF	9	Unmodified	_LEHEYIHNF_					0	0	0		nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2;ENST00000481222.5_1_2:27224957-27246540:+|nuORF;MAPRE2|p.S195Vfs*13|1|0.18|ENSG00000166974|chr18:35102124-35102125|-/A|frameshift_variant;nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000084764|Q9UPY8-2|MAPRE3;ENSG00000084764|ENST00000233121|MAPRE3	nc|ENSG00000166974|Q15555-4|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	MULTI-SECPEP	HCT116MG_D190212_S3	3	601.7864379882812	2	601.285463	1200.55637	0.51482	0.00030955	-0.23688	-0.00014243	0.27794	0.00016712	601.2854379319156	34.953	0.20795	34.656	34.544	34.752	-0.29707					5	3	2	0	0	0	0.11907	1	12911	12911		45.74	17.245	1	4112600			18351	4896	11349	11406	17623	17623					-0.035883465334336506
LEHEYIQNF	9	Unmodified	_LEHEYIQNF_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	HCT116MG_D190212_S1	1	596.7859497070312	2	596.785296	1191.55604	0.81251	0.0004849	0.36228	0.0002162	1.1748	0.0007011	596.7855169910723	41.367	0.26046	41.367	41.237	41.498	0					8	4	2	0	0	0	0.069315	1	15597	15597		65.235	11.402	1	25606000			18352	1783	11350	11407	17624	17624					-0.032077662532856266
LEHEYIQNF	9	Unmodified	_LEHEYIQNF_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	HCT116MG_D190212_S2	2	597.286865234375	2	596.785296	1191.55604	0.63833	0.00038095	0.1369	8.1703E-05	0.77523	0.00046265	596.785247195405	41.336	0.35888	41.268	41.037	41.396	-0.068199					15	6	4	0	0	0	0.023938	2	15617	15567;15617		92.491	40.862	1	172110000			18353	1783	11350	11407	17625;17626	17626					-0.032077662532856266
LEHEYIQNF	9	Unmodified	_LEHEYIQNF_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	HCT116MG_D190212_S3	3	596.7879028320312	2	596.785296	1191.55604	0.39624	0.00023647	1.9069	0.001138	2.3032	0.0013745	596.786615902962	41.631	0.23628	41.328	41.244	41.48	-0.30257					14	10	2	0	0	0	0.031089	1	15480	15480		85.272	37.523	1	17202000			18354	1783	11350	11407	17627	17627					-0.032077662532856266
LEHEYIQNF	9	Unmodified	_LEHEYIQNF_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	HCT116MG_D190212_S4	4	596.7864379882812	2	596.785296	1191.55604	1.062	0.00063378	0.75794	0.00045233	1.8199	0.0010861	596.7857234587569	41.731	0.149	41.355	41.264	41.413	-0.37637					12	8	2	0	0	0	0.069315	1	15300	15300		65.235	38.967	1	6954700			18355	1783	11350	11407	17628	17628					-0.032077662532856266
LEHFETTY	8	Unmodified	_LEHFETTY_					0	0	0			REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MSMS	HCT116MG_D190212_S3	3	520.238525390625	2	520.24019	1038.46583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.672	1	26.522	26.022	27.022	-0.14924								0	0	0	0.8837	1	9579	9579		9.3474	0.60203	1		+		18356	13111	11351	11408	17629	17629					-0.051868155817146544
LEHFTDLY	8	Unmodified	_LEHFTDLY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;ENST00000466513.1_1_17:57742174-57744343:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2503662109375	2	519.250557	1036.48656	0.34029	0.0001767	-0.061439	-3.1902E-05	0.27885	0.0001448	519.2502457364003	45.275	0.36411	45.183	44.943	45.307	-0.092472					12	6	3	0	0	0	0.19622	1	17226	17226		74.396	33.948	1	32745000			18357	3710	11352	11409	17630	17630					-0.030222252020166707
LEHITHSL	8	Unmodified	_LEHITHSL_					0	0	0		ENST00000496420.5_1_7:92136298-92136457:-|nuORF;PEX1|p.R636Gfs*9|1|0.3|ENSG00000127980|chr7:92504897-92504897|T/-|frameshift_variant;nc|ENSG00000127980|O43933-2|PEX1;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	ENST00000496420.5_1_7:92136298-92136457:-|nuORF	ENST00000496420.5_1_7:92136298-92136457:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	475.7342224121094	2	475.258717	948.50288	0.47371	0.00022513	0.40123	0.00019069	0.87494	0.00041582	475.25871820061565	27.28	0.20778	26.928	26.818	27.026	-0.35254					5	3	2	0	0	0	0.051795	1	9913	9913		92.822	0	1	3897800			18358	2984	11353	11410	17631	17631					0.026569007547209367
LEHITSEY	8	Unmodified	_LEHITSEY_					0	0	0		ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1;PER1|p.A962Pfs*160|1|0.38|ENSG00000179094|chr17:8143454-8143454|C/-|frameshift_variant;ENST00000579065.1_1_17:8052750-8054072:-|nuORF;PER1|p.L380Cfs*73|1|0.18|ENSG00000179094|chr17:8148093-8148093|G/-|frameshift_variant;PER1|p.L466*|1|0.14|ENSG00000179094|chr17:8147571-8147571|G/-|frameshift_variant	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	MULTI-MSMS	HCT116MG_D190212_S2	2	496.24053955078125	2	496.24019	990.465826	0.31373	0.00015568	-0.60083	-0.00029816	-0.2871	-0.00014247	496.2398556001156	30.994	0.31013	30.727	30.56	30.87	-0.26704					7	5	2	0	0	0	0.64404	1	11430	11430		28.487	3.813	1	20218000			18359	5535	11354	11411	17632	17632					-0.029788155817072948
LEHTAQTY	8	Unmodified	_LEHTAQTY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	481.7330322265625	2	481.732532	961.45051	0.10633	5.1223E-05	0.97956	0.00047189	1.0859	0.00052311	481.7331446706093	21.474	0.36239	21.091	20.859	21.221	-0.38288					8	6	2	0	0	0	0.41924	1	7599	7599		48.346	12.302	1	10171000			18360	1937	11355	11412	17633	17633					-0.031756823789010014
LEHTAQTY	8	Unmodified	_LEHTAQTY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S3	3	482.2345886230469	2	481.732532	961.45051	0.061992	2.9863E-05	0.80636	0.00038845	0.86835	0.00041831	481.73260033993273	20.81	0.31219	20.845	20.662	20.975	0.034473					9	5	2	0	0	0	0.12693	2	7236	7236;7249		88.904	52.859	1	3200100			18361	1937	11355	11412	17634;17635	17634					-0.031756823789010014
LEHVDFESL	9	Unmodified	_LEHVDFESL_					0	0	0		nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	MULTI-SECPEP	HCT116MG_D190212_S2	2	545.316650390625	2	544.766571	1087.51859	0.72151	0.00039306	1.1553	0.00062935	1.8768	0.0010224	544.7669712431472	47.519	0.25795	47.397	47.233	47.491	-0.12175					8	4	2	0	0	0	0.25874	1	18068	18068		7.2892	0.56607	1	8924000			18362	3967	11356	11413	17636	17636					-0.021668575189096373
LEIACEVREI	10	Unmodified	_LEIACEVREI_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000589138.5_1_19:14037907-14038165:+|nuORF;ENST00000589224.1_1_19:14034393-14038165:+|nuORF	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	587.3276977539062	2	587.810456	1173.60636	0.40307	0.00023693	-2.4967	-0.0014676	-2.0937	-0.0012307	587.8088690593999	32.266	0.26006	32.266	32.118	32.378	0					7	4	2	0	0	0	0.2916	1	11895	11895		22.736	11.937	1	2818700			18363	340	11357	11414	17637	17637					0.026500200802274776
LEIDDMYTPAY	11	Unmodified	_LEIDDMYTPAY_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MSMS	HCT116MG_D190212_S2	2	665.7993774414062	2	665.797211	1329.57987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.632	1	38.547	38.047	39.047	-0.084618								0	0	0	0.94416	1	14516	14516		9.3831	0.63772	1				18364	4741	11358	11415	17638	17638					-0.07173713601764575
LEIEAENHY	9	Unmodified	_LEIEAENHY_					0	0	0		ENSG00000173141|ENST00000309594|MRPL57	ENSG00000173141|ENST00000309594|MRPL57	ENSG00000173141|ENST00000309594|MRPL57	MSMS	HCT116MG_D190212_S1	1	558.9710083007812	2	559.261653	1116.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.492	1	33.492	32.992	33.992	0								0	0	0	0.1107	1	12396	12396		53.833	13.594	1				18365	5274	11359	11416	17639	17639					-0.044840455242592725
LEILFVKKVLT	11	Unmodified	_LEILFVKKVLT_					0	0	0		tr|U7SL09|U7SL09_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02025PE=4SV=1	tr|U7SL09|U7SL09_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02025PE=4SV=1	tr|U7SL09|U7SL09_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02025PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	651.9251098632812	2	651.923406	1301.83226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.22	1	57.951	57.451	58.451	-0.26932								0	0	0	0.95954	1	22143	22143		1.3295	0	1				18366	18331	11360	11417	17640	17640					0.19341712261757493
LEILTVKFKKR	11	Unmodified	_LEILTVKFKKR_					0	0	0		GCNT1|p.S284Ifs*10|1|0.02|ENSG00000187210|chr9:76503230-76503231|-/A|frameshift_variant;GCNT1|p.I305Nfs*15|1|0.52|ENSG00000187210|chr9:76503288-76503289|-/A|frameshift_variant;ENSG00000187210|ENST00000376730|GCNT1	GCNT1|p.S284Ifs*10|1|0.02|ENSG00000187210|chr9:76503230-76503231|-/A|frameshift_variant	GCNT1|p.S284Ifs*10|1|0.02|ENSG00000187210|chr9:76503230-76503231|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	687.9456176757812	2	687.945205	1373.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.876	1	41.573	41.073	42.073	-0.30257								0	0	0	0.95636	1	15582	15582		2.9952	1.6657	1				18367	5930	11361	11418	17641	17641					0.20387321758880717
LEILTVKFKKR	11	Unmodified	_LEILTVKFKKR_					0	0	0		GCNT1|p.S284Ifs*10|1|0.02|ENSG00000187210|chr9:76503230-76503231|-/A|frameshift_variant;GCNT1|p.I305Nfs*15|1|0.52|ENSG00000187210|chr9:76503288-76503289|-/A|frameshift_variant;ENSG00000187210|ENST00000376730|GCNT1	GCNT1|p.S284Ifs*10|1|0.02|ENSG00000187210|chr9:76503230-76503231|-/A|frameshift_variant	GCNT1|p.S284Ifs*10|1|0.02|ENSG00000187210|chr9:76503230-76503231|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	687.94677734375	2	687.945205	1373.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.465	1	42.161	41.661	42.661	-0.30352								0	0	0	0.95686	1	15820	15820		2.7352	1.4057	1				18368	5930	11361	11418	17642	17642					0.20387321758880717
LEKAHLVEV	9	Unmodified	_LEKAHLVEV_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	HCT116MG_D190212_S2	2	519.8054809570312	2	519.303124	1036.5917	0.10208	5.3011E-05	0.63522	0.00032987	0.7373	0.00038288	519.8053650584691	37.533	0.9246	37.43	37.18	38.105	-0.10318					22	17	2	0	0	0	0.66792	1	14091	14091		7.2892	0	1	37276000			18369	4377	11362	11419	17643	17643					0.07486315994378856
LEKARTKRWQR	11	Unmodified	_LEKARTKRWQR_					0	0	0			REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MSMS	HCT116MG_D190212_S1	1	736.4329833984375	2	736.433858	1470.85316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.343	1	42.343	41.843	42.843	0								0	0	0	0.9598	1	15968	15968		1.1933	0	1		+		18370	13519	11363	11420	17644	17644					0.13657115413980137
LEKDFNKIK	9	Unmodified	_LEKDFNKIK_					0	0	0		tr|U7SYQ4|U7SYQ4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00873PE=4SV=1	tr|U7SYQ4|U7SYQ4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00873PE=4SV=1	tr|U7SYQ4|U7SYQ4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00873PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	567.8121337890625	2	567.829506	1133.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.073	1	52.073	51.573	52.573	0								0	0	0	0.76592	1	19908	19908		15.248	1.3424	1				18371	18517	11364	11421	17645	17645					0.08298274057187882
LEKDIVDII	9	Unmodified	_LEKDIVDII_					0	0	0			REV__nc|ENSG00000074603|Q6V1X1-4|DPP8	REV__nc|ENSG00000074603|Q6V1X1-4|DPP8	MSMS	HCT116MG_D190212_S1	1	529.3323364257812	2	529.310615	1056.60668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.058	1	55.058	54.558	55.558	0								0	0	0	0.76759	1	21132	21132		9.3831	1.2276	1		+		18372	10800	11365	11422	17646	17646					0.08063763071709218
LEKEFQQF	8	Unmodified	_LEKEFQQF_					0	0	0		ENST00000513565.6_1_5:122694091-122724023:-|nuORF;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	MSMS	HCT116MG_D190212_S2	2	534.7700805664062	2	534.771657	1067.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.186	1	19.809	19.309	20.309	-0.37671								0	0	0	0.79325	1	7042	7042		23.148	1.4018	1				18373	5041	11366	11423	17647	17647					-0.002302497936625514
LEKEITTY	8	Unmodified	_LEKEITTY_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S1	1	499.2586364746094	2	498.76604	995.517527	0.26633	0.00013284	0.041294	2.0596E-05	0.30763	0.00015343	498.76601495507083	29.919	0.20822	29.919	29.789	29.997	0					6	3	2	0	0	0	0.1105	1	10965	10965		92.653	14.669	1	10180000		+	18374	585	11367	11424	17648	17648					0.019589281121852764
LEKEITTY	8	Unmodified	_LEKEITTY_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7656555175781	2	498.76604	995.517527	0.073817	3.6818E-05	-0.4496	-0.00022424	-0.37578	-0.00018743	498.765641645136	30.323	0.20547	30.038	29.925	30.13	-0.28453					5	3	2	0	0	0	0.38307	1	11155	11155		51.63	1.6968	1	42890000		+	18375	585	11367	11424	17649	17649					0.019589281121852764
LEKEKRKN	8	Unmodified	_LEKEKRKN_					0	0	0			REV__tr|U7T4A0|U7T4A0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00395PE=4SV=1	REV__tr|U7T4A0|U7T4A0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00395PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	522.812255859375	2	522.811648	1043.60874	0.24714	0.00012921	0.050037	2.616E-05	0.29717	0.00015537	522.8115913603856	51.272	1.3442	51.272	50.936	52.28	0					52	25	5	0	0	0	0.85571	1	19950	19950		4.3292	0	1	1993399999.9999998	+		18376	17966	11368	11425	17650	17650					0.08868236600187629
LEKEKTHVA	9	Unmodified	_LEKEKTHVA_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1;ENST00000485821.1_1_1:220156057-220157598:-|nuORF	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S2	2	527.7978515625	2	527.798206	1053.58186	0.2884	0.00015222	-0.5638	-0.00029757	-0.2754	-0.00014535	527.7978286693174	14.642	0.20876	14.323	14.192	14.401	-0.31952					7	3	3	0	0	0	0.24534	1	4832	4832		36.506	19.393	1	2377600			18377	3424	11369	11426	17651	17651					0.05721127988999797
LEKELKEKKRF	11	Unmodified	_LEKELKEKKRF_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MSMS	HCT116MG_D190212_S3	3	724.4332885742188	2	724.435201	1446.85585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.489	1	51.178	50.678	51.678	-0.31166								0	0	0	0.95772	1	19442	19442		2.2828	0.95324	1		+		18378	11683	11370	11427	17652	17652					0.1502952602827463
LEKELQSIR	9	Unmodified	_LEKELQSIR_					0	0	0			REV__MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	REV__MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	558.3243408203125	2	558.324588	1114.63462	0.35395	0.00019762	0.615	0.00034337	0.96895	0.00054099	558.324824932717	54.065	0.57299	53.736	53.509	54.082	-0.32923					15	10	2	0	0	0	0.66233	1	20195	20195		7.609	0.88579	1	3574100	+		18379	13471	11371	11428	17653	17653					0.081890860518115
LEKELVSKY	9	Unmodified	_LEKELVSKY_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MSMS	HCT116MG_D190212_S1	1	370.21307373046875	3	370.213135	1107.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.487	1	28.487	27.987	28.987	0								0	0	0	0.7663	1	10378	10378		13.615	2.8154	1				18380	1607	11372	11429	17654	17654					0.06807165446025465
LEKELVSKY	9	Unmodified	_LEKELVSKY_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	HCT116MG_D190212_S2	2	370.213134765625	3	370.213135	1107.61758	-0.2594	-9.6034E-05	0.13265	4.9109E-05	-0.12675	-4.6925E-05	370.2131557497705	28.846	0.20344	28.53	28.402	28.606	-0.31613					5	3	2	0	0	0	0.50572	1	10569	10569		12.228	1.9124	1	19049000			18381	1607	11372	11429	17655	17655					0.06807165446025465
LEKFQGLTV	9	Unmodified	_LEKFQGLTV_					0	0	0			REV__nc|ENSG00000103126|O15169-2|AXIN1;REV__ENST00000461023.5_1_16:338124-339729:-|nuORF	REV__nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7976684570312	2	517.797675	1033.5808	0.32266	0.00016707	-0.40918	-0.00021187	-0.086514	-4.4797E-05	517.7973310698135	45.219	0.31149	45.127	44.996	45.307	-0.092472					8	5	2	0	0	0	0.28073	1	17231	17231		32.786	0	1	14841000	+		18382	11176;15778	11373	11430	17656	17656					0.06534913620089355
LEKGGILRVKY	11	Unmodified	_LEKGGILRVKY_					0	0	0			REV__tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1	REV__tr|U7SQQ6|U7SQQ6_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01754PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	638.3967895507812	2	638.392805	1274.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.789	1	42.414	41.914	42.914	-0.37493								0	0	0	0.95581	1	15740	15740		3.2813	0	1		+		18383	17754	11374	11431	17657	17657					0.14466200282345199
LEKIKRKRH	9	Unmodified	_LEKIKRKRH_					0	0	0		nc|ENSG00000187048|Q02928-2|CYP4A11;nc|ENSG00000162365|Q5TCH4-2|CYP4A22;ENSG00000187048|ENST00000310638|CYP4A11;ENSG00000162365|ENST00000371891|CYP4A22	nc|ENSG00000187048|Q02928-2|CYP4A11	nc|ENSG00000187048|Q02928-2|CYP4A11	MSMS	HCT116MG_D190212_S1	1	604.3907470703125	2	604.390931	1206.76731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.742	1	57.742	57.242	58.242	0								0	0	0	0.77012	1	22226	22226		0.45834	0	1				18384	4513	11375	11432	17658	17658					0.1721957529912288
LEKILSKFSY	10	Unmodified	_LEKILSKFSY_					0	0	0		tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	614.3544921875	2	614.352814	1226.69108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.665	1	36.55	36.05	37.05	-0.11478								0	0	0	0.94339	1	13718	13718		6.2058	0.47393	1				18385	18320	11376	11433	17659	17659					0.08679713888500373
LEKKDLHGPS	10	Unmodified	_LEKKDLHGPS_					0	0	0			REV__ENSG00000184564|ENST00000647374|SLITRK6	REV__ENSG00000184564|ENST00000647374|SLITRK6	MSMS	HCT116MG_D190212_S3	3	562.2910766601562	2	562.308938	1122.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.514	1	38.213	37.713	38.713	-0.30137								0	0	0	0.94107	1	14270	14270		6.7232	0.99131	1		+		18386	13805	11377	11434	17660	17660					0.04692513017744204
LEKKKVELL	9	Unmodified	_LEKKKVELL_					0	0	0		ENST00000465717.1_1_1:170508481-170508748:+|nuORF;ENST00000498600.2_1_1:170508481-170511691:+|nuORF	ENST00000465717.1_1_1:170508481-170508748:+|nuORF	ENST00000465717.1_1_1:170508481-170508748:+|nuORF	MSMS	HCT116MG_D190212_S2	2	550.3587646484375	2	550.357899	1098.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.372	1	58.201	57.701	58.701	-0.1703								0	0	0	0.76973	1	22558	22558		1.8442	0	1				18387	8097	11378	11435	17661	17661					0.15584321613710017
LEKKKWLK	8	Unmodified	_LEKKKWLK_					0	0	0			REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	MSMS	HCT116MG_D190212_S2	2	358.2336730957031	3	358.234093	1071.68045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.355	1	33.163	32.663	33.663	-0.19297								0	0	0	0.8837	1	12373	12373		1.4819	0.41044	1		+		18388	10108	11379	11436	17662	17662					0.14747776024682935
LEKKLLSSVP	10	Unmodified	_LEKKLLSSVP_					0	0	0			REV__ENST00000448582.6_1_12:31435188-31435254:-|nuORF	REV__ENST00000448582.6_1_12:31435188-31435254:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	558.3578491210938	2	557.347532	1112.68051	0.45352	0.00025277	-0.028522	-1.5896E-05	0.425	0.00023687	557.3474149148699	39.039	0.20651	38.954	38.806	39.012	-0.084618					8	3	3	0	0	0	0.87059	1	14645	14645		5.7319	0.43497	1	23561000	+		18389	15696	11380	11437	17663	17663					0.12867731234041457
LEKKRLFF	8	Unmodified	_LEKKRLFF_					0	0	0		DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;DNAH12|p.F1712Lfs*4|1|0.34|ENSG00000174844|chr3:57428681-57428681|A/-|frameshift_variant;nc|ENSG00000174844|Q6ZR08|DNAH12;DNAH12|p.K1023Nfs*9|3|0.34|ENSG00000174844|chr3:57457919-57457919|T/-|frameshift_variant;DNAH12|p.E1339Gfs*6|1|0.27|ENSG00000174844|chr3:57446125-57446126|-/C|frameshift_variant;DNAH7|p.P1564Tfs*5|1|0.25|ENSG00000118997|chr2:195895182-195895183|-/T|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.G2194Efs*14|1|0.34|ENSG00000158486|chr16:20997303-20997303|C/-|frameshift_variant;DNAH3|p.I2375Sfs*8|1|0.13|ENSG00000158486|chr16:20985619-20985619|T/-|frameshift_variant;DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant;DNAH3|p.E3315Dfs*37|1|0.1|ENSG00000158486|chr16:20963939-20963940|-/A|frameshift_variant;ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant;DNAH7|p.P2310Tfs*50|1|0.14|ENSG00000118997|chr2:195864727-195864728|-/T|frameshift_variant;DNAH7|p.I2732Lfs*15|1|0.34|ENSG00000118997|chr2:195857597-195857597|T/-|frameshift_variant;DNAH7|p.T2935Ifs*12|1|0.24|ENSG00000118997|chr2:195845142-195845143|AG/-|frameshift_variant;ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000118997|ENST00000312428|DNAH7;ENSG00000158486|ENST00000698260|DNAH3	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	540.8320922851562	2	540.831852	1079.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.727	1	53.727	53.227	54.227	0								0	0	0	0.8837	1	20583	20583		13.508	1.8676	1				18390	699;2622;4376	11381	11438	17664	17664					0.11251202990615639
LEKKRLFF	8	Unmodified	_LEKKRLFF_					0	0	0		DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;DNAH12|p.F1712Lfs*4|1|0.34|ENSG00000174844|chr3:57428681-57428681|A/-|frameshift_variant;nc|ENSG00000174844|Q6ZR08|DNAH12;DNAH12|p.K1023Nfs*9|3|0.34|ENSG00000174844|chr3:57457919-57457919|T/-|frameshift_variant;DNAH12|p.E1339Gfs*6|1|0.27|ENSG00000174844|chr3:57446125-57446126|-/C|frameshift_variant;DNAH7|p.P1564Tfs*5|1|0.25|ENSG00000118997|chr2:195895182-195895183|-/T|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.G2194Efs*14|1|0.34|ENSG00000158486|chr16:20997303-20997303|C/-|frameshift_variant;DNAH3|p.I2375Sfs*8|1|0.13|ENSG00000158486|chr16:20985619-20985619|T/-|frameshift_variant;DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant;DNAH3|p.E3315Dfs*37|1|0.1|ENSG00000158486|chr16:20963939-20963940|-/A|frameshift_variant;ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant;DNAH7|p.P2310Tfs*50|1|0.14|ENSG00000118997|chr2:195864727-195864728|-/T|frameshift_variant;DNAH7|p.I2732Lfs*15|1|0.34|ENSG00000118997|chr2:195857597-195857597|T/-|frameshift_variant;DNAH7|p.T2935Ifs*12|1|0.24|ENSG00000118997|chr2:195845142-195845143|AG/-|frameshift_variant;ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000118997|ENST00000312428|DNAH7;ENSG00000158486|ENST00000698260|DNAH3	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	541.2747802734375	2	540.831852	1079.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.618	1	45.519	45.019	46.019	-0.098991								0	0	0	0.8837	1	17353	17353		8.5933	2.8329	1				18391	699;2622;4376	11381	11438	17665	17665					0.11251202990615639
LEKKRLFF	8	Unmodified	_LEKKRLFF_					0	0	0		DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12;DNAH12|p.F1712Lfs*4|1|0.34|ENSG00000174844|chr3:57428681-57428681|A/-|frameshift_variant;nc|ENSG00000174844|Q6ZR08|DNAH12;DNAH12|p.K1023Nfs*9|3|0.34|ENSG00000174844|chr3:57457919-57457919|T/-|frameshift_variant;DNAH12|p.E1339Gfs*6|1|0.27|ENSG00000174844|chr3:57446125-57446126|-/C|frameshift_variant;DNAH7|p.P1564Tfs*5|1|0.25|ENSG00000118997|chr2:195895182-195895183|-/T|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.G2194Efs*14|1|0.34|ENSG00000158486|chr16:20997303-20997303|C/-|frameshift_variant;DNAH3|p.I2375Sfs*8|1|0.13|ENSG00000158486|chr16:20985619-20985619|T/-|frameshift_variant;DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant;DNAH3|p.E3315Dfs*37|1|0.1|ENSG00000158486|chr16:20963939-20963940|-/A|frameshift_variant;ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant;DNAH7|p.P2310Tfs*50|1|0.14|ENSG00000118997|chr2:195864727-195864728|-/T|frameshift_variant;DNAH7|p.I2732Lfs*15|1|0.34|ENSG00000118997|chr2:195857597-195857597|T/-|frameshift_variant;DNAH7|p.T2935Ifs*12|1|0.24|ENSG00000118997|chr2:195845142-195845143|AG/-|frameshift_variant;ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000118997|ENST00000312428|DNAH7;ENSG00000158486|ENST00000698260|DNAH3	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	540.8309326171875	2	540.831852	1079.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.77	1	49.408	48.908	49.908	-0.36213								0	0	0	0.8837	1	18472	18472		5.2307	0.90143	1				18392	699;2622;4376	11381	11438	17666	17666					0.11251202990615639
LEKKTEILERP	11	Unmodified	_LEKKTEILERP_					0	0	0			REV__RBM20|p.H797Ifs*113|1|0.28|ENSG00000203867|chr10:110812782-110812782|C/-|frameshift_variant	REV__RBM20|p.H797Ifs*113|1|0.28|ENSG00000203867|chr10:110812782-110812782|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	677.936767578125	2	678.398284	1354.78202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.239	1	53.943	53.443	54.443	-0.29666								0	0	0	0.95408	1	20548	20548		4.1895	0.90819	1		+		18393	17464	11382	11439	17667	17667					0.1188155786594507
LEKLAKKQVA	10	Unmodified	_LEKLAKKQVA_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MSMS	HCT116MG_D190212_S1	1	564.3591918945312	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.283	1	42.283	41.783	42.783	0								0	0	0	0.95507	1	15944	15944		3.5965	0.60125	1				18394	3327	11383	11440	17668	17668					0.14910839845242663
LEKLFRRLTK	10	Unmodified	_LEKLFRRLTK_					0	0	0			REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|9|2|sense	REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|9|2|sense	MULTI-MSMS	HCT116MG_D190212_S1	1	652.4136352539062	2	652.414072	1302.81359	0.61755	0.0004029	-2.838	-0.0018516	-2.2205	-0.0014487	652.4136569153188	60.901	2.6619	60.901	60.052	62.714	0					100	51	3	0	0	0	0.88823	1	23615	23615		1.4819	0	1	36978000	+		18395	16964	11384	11441	17669	17669					0.17429595410544607
LEKLFRRLTK	10	Unmodified	_LEKLFRRLTK_					0	0	0			REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|9|2|sense	REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|9|2|sense	MSMS	HCT116MG_D190212_S3	3	652.4122314453125	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.968	1	41.665	41.165	42.165	-0.30257								0	0	0	0.96453	1	15619	15619		1.4819	0	1		+		18396	16964	11384	11441	17670	17670					0.17429595410544607
LEKLFRRLTK	10	Unmodified	_LEKLFRRLTK_					0	0	0			REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|9|2|sense	REV__L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|9|2|sense	MSMS	HCT116MG_D190212_S4	4	652.4125366210938	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.984	1	52.645	52.145	53.145	-0.33972								0	0	0	0.96453	1	19768	19768		1.4819	0	1		+		18397	16964	11384	11441	17671	17671					0.17429595410544607
LEKLRDVIAQ	10	Unmodified	_LEKLRDVIAQ_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MSMS	HCT116MG_D190212_S2	2	592.7763061523438	2	592.853512	1183.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.7	1	46.589	46.089	47.089	-0.11121								0	0	0	0.92917	1	17795	17795		9.3831	0.63772	1				18398	1507	11385	11442	17672	17672					0.10797347977245408
LEKLRLDKL	9	Unmodified	_LEKLRLDKL_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MSMS	HCT116MG_D190212_S2	2	564.3592529296875	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.566	1	55.38	54.88	55.88	-0.18565								0	0	0	0.76818	1	21422	21422		7.2892	0	1				18399	3015	11386	11443	17673	17673					0.14910839845219925
LEKLRLDKL	9	Unmodified	_LEKLRLDKL_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MSMS	HCT116MG_D190212_S2	2	564.279052734375	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.73	1	55.545	55.045	56.045	-0.18565								0	0	0	0.76818	1	21489	21489		7.2892	0	1				18400	3015	11386	11443	17674	17674					0.14910839845219925
LEKLRLDKL	9	Unmodified	_LEKLRLDKL_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.L933Hfs*33|1|0.04|ENSG00000128833|chr15:52237552-52237553|-/T|frameshift_variant;MYO5C|p.L933Sfs*35|1|0.04|ENSG00000128833|chr15:52237553-52237554|-/AAGTGGA|frameshift_variant;MYO5C|p.E1050Sfs*8|1|0.32|ENSG00000128833|chr15:52229192-52229192|C/-|frameshift_variant;MYO5C|p.L1151Wfs*19|1|0.17|ENSG00000128833|chr15:52223719-52223719|A/-|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MSMS	HCT116MG_D190212_S3	3	564.3590087890625	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.794	1	52.488	51.988	52.988	-0.30639								0	0	0	0.76818	1	19966	19966		7.2892	0	1				18401	3015	11386	11443	17675	17675					0.14910839845219925
LEKLRQLEEQV	11	Unmodified	_LEKLRQLEEQV_					0	0	0			REV__KIF16B|p.F1272Sfs*3|1|0.36|ENSG00000089177|chr20:16273392-16273392|A/-|frameshift_variant;REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-MSMS	HCT116MG_D190212_S2	2	692.893798828125	2	692.893366	1383.77218	0.66503	0.00046079	-0.15502	-0.00010741	0.51001	0.00035338	692.8933391280184	22.152	0.31238	21.767	21.583	21.896	-0.38503					15	5	4	0	0	0	0.52297	1	7838	7838		43.982	3.2569	1	54694000	+		18402	10971;17089	11387	11444	17676	17676					0.09564369860572697
LEKLRQLEEQV	11	Unmodified	_LEKLRQLEEQV_					0	0	0			REV__KIF16B|p.F1272Sfs*3|1|0.36|ENSG00000089177|chr20:16273392-16273392|A/-|frameshift_variant;REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	692.893366	1383.77218	0.74889	0.0005189	-0.32818	-0.0002274	0.4207	0.0002915	692.893179393717	21.672	0.36455	21.672	21.437	21.802	0	-0.047398	-8.5473E-05	NaN	43.982	24	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215930000	+		18403	10971;17089	11387	11444							0.09564369860572697
LEKLSTELY	9	Unmodified	_LEKLSTELY_					0	0	0		IFNA7|p.F108L|1|0.33|ENSG00000214042|chr9:21201842-21201842|A/C|missense_variant	IFNA7|p.F108L|1|0.33|ENSG00000214042|chr9:21201842-21201842|A/C|missense_variant	IFNA7|p.F108L|1|0.33|ENSG00000214042|chr9:21201842-21201842|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	548.30029296875	2	548.300247	1094.58594	0.44013	0.00024133	0.0031144	1.7076E-06	0.44325	0.00024303	548.3000708923965	45.888	0.30829	45.787	45.658	45.966	-0.1014					7	5	2	0	0	0	0.32978	1	17502	17502		27.629	0	1	13761000			18404	9232	11388	11445	17677	17677					0.042431726920540314
LEKLVDILVEV	11	Unmodified	_LEKLVDILVEV_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	REV__nc|ENSG00000125107|A5YKK6-3|CNOT1	MSMS	HCT116MG_D190212_S1	1	635.3861083984375	2	635.386854	1268.75915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.941	1	43.941	43.441	44.441	0								0	0	0	0.94851	1	16615	16615		7.1017	1.8048	1		+		18405	11803	11389	11446	17678	17678					0.1355253874844493
LEKMFQKQKYI	11	Unmodified	_LEKMFQKQKYI_					0	0	0		ENSG00000185610|ENST00000332700|DBX2;ENSG00000109851|ENST00000524983|DBX1	ENSG00000185610|ENST00000332700|DBX2	ENSG00000185610|ENST00000332700|DBX2	MSMS	HCT116MG_D190212_S1	1	728.406982421875	2	728.405055	1454.79556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.683	1	57.683	57.183	58.183	0								0	0	0	0.95686	1	22202	22202		2.7352	0	1				18406	5836	11390	11447	17679	17679					0.086350923735381
LEKNQITAL	9	Unmodified	_LEKNQITAL_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000543049.1_1_16:57114926-57116437:+|nuORF;ENST00000543103.1_1_16:57115217-57116437:+|nuORF;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	HCT116MG_D190212_S1	1	515.30078125	2	515.300581	1028.58661	0.45758	0.00023579	-0.0093848	-4.836E-06	0.4482	0.00023096	515.3005768387595	46.881	0.20739	46.881	46.751	46.958	0					9	3	3	0	0	0	0.39784	1	17802	17802		22.736	0	1	72733000			18407	3689	11391	11448	17680	17680					0.07346012131756652
LEKNRDTLP	9	Unmodified	_LEKNRDTLP_					0	0	0		MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;MYO3B|p.G1143Efs*93|1|0.19|ENSG00000071909|chr2:170514975-170514975|G/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-3|MYO3B;MYO3B|p.K1243Sfs*25|1|0.21|ENSG00000071909|chr2:170543980-170543980|A/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B;ENST00000602629.1_1_2:171225816-171400468:+|nuORF	MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant	MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	543.3020629882812	2	543.301113	1084.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.156	1	44.156	43.656	44.656	0								0	0	0	0.76739	1	16702	16702		10.074	0	1				18408	1259	11392	11449	17681	17681					0.048762265006644157
LEKPAKYDD	9	Unmodified	_LEKPAKYDD_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF;ENST00000505218.1_1_5:159377718-159377781:-|nuORF;ENST00000434621.2_1_7:9655276-9655384:+|nuORF;ENST00000424043.3_1_1:92580458-92580773:-|nuORF;ENST00000452570.1_1_X:39646388-39646742:-|nuORF;ENST00000432206.1_1_20:13373901-13374318:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	MSMS	HCT116MG_D190212_S1	1	539.774658203125	2	539.774396	1077.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.018	1	56.018	55.518	56.518	0								0	0	0	0.76948	1	21526	21526		2.7352	0.43246	1				18409	2300	11393	11450	17682	17682					-0.001425710018565951
LEKPFLLPVEA	11	Unmodified	_LEKPFLLPVEA_					0	0	0		ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	ENSG00000178952|ENST00000313511|TUFM	MULTI-MSMS	HCT116MG_D190212_S3	3	628.3700561523438	2	628.368464	1254.72238	0.54953	0.00034531	0.51799	0.00032549	1.0675	0.00067079	628.3686191675592	33.293	0.32673	33.003	32.925	33.252	-0.29013					14	8	2	0	0	0	0.73844	1	12200	12200		7.609	0.88579	1	15048000			18410	5523	11394	11451	17683	17683					0.1052028692258773
LEKQDWEHA	9	Unmodified	_LEKQDWEHA_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MSMS	HCT116MG_D190212_S1	1	578.2756958007812	2	578.275095	1154.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.155	1	26.155	25.655	26.655	0								0	0	0	0.73401	1	9439	9439		24.021	17.297	1				18411	2467	11395	11452	17684	17684					-0.03544936913090169
LEKQDWEHA	9	Unmodified	_LEKQDWEHA_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	HCT116MG_D190212_S1	1	578.7960815429688	2	578.275095	1154.53564	0.60945	0.00035243	-0.26455	-0.00015298	0.34491	0.00019945	578.2747937704306	26.099	0.2087	26.099	25.98	26.188	0					7	3	3	0	0	0	0.0080897	1	9413	9413		128.57	128.57	1	5857300			18412	2467	11395	11452	17685	17685					-0.03544936913090169
LEKQDWEHA	9	Unmodified	_LEKQDWEHA_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	HCT116MG_D190212_S2	2	578.2750854492188	2	578.275095	1154.53564	0.33396	0.00019312	-0.47335	-0.00027373	-0.13939	-8.0608E-05	578.274919880776	26.515	0.25921	26.154	25.972	26.232	-0.36164					9	4	3	0	0	0	0.066362	1	9625	9625		80.676	80.676	1	20385000			18413	2467	11395	11452	17686	17686					-0.03544936913090169
LEKQDWEHA	9	Unmodified	_LEKQDWEHA_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MSMS	HCT116MG_D190212_S2	2	385.8520202636719	3	385.852489	1154.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.603	1	26.241	25.741	26.741	-0.36164								0	0	0	0.76616	1	9632	9632		14.405	6.46	1				18414	2467	11395	11452	17687	17687					-0.03544936913090169
LEKQEESVQ	9	Unmodified	_LEKQEESVQ_					0	0	0		UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	545.2769775390625	2	545.274761	1088.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.988	1	56.988	56.488	57.488	0								0	0	0	0.76834	1	21920	21920		6.7232	0	1				18415	4415	11396	11453	17688	17688					-0.005757763527981297
LEKRDRYWRLT	11	Unmodified	_LEKRDRYWRLT_					0	0	0			REV__ENSG00000105767|ENST00000222374|CADM4	REV__ENSG00000105767|ENST00000222374|CADM4	MSMS	HCT116MG_D190212_S1	1	768.2847900390625	2	768.425699	1534.83684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.69	1	53.69	53.19	54.19	0								0	0	0	0.95686	1	20568	20568		2.7352	1.4057	1		+		18416	11273	11397	11454	17689	17689					0.09081989457217787
LEKREKKD	8	Unmodified	_LEKREKKD_					0	0	0			REV__tr|U7SYR9|U7SYR9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00893PE=4SV=1	REV__tr|U7SYR9|U7SYR9_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00893PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	523.3040161132812	2	523.303655	1044.59276	0.29672	0.00015527	0.47876	0.00025054	0.77548	0.00040581	523.3036233874781	48.305	1.2382	47.989	47.21	48.449	-0.31596					40	23	2	0	0	0	0.85571	1	17937	17937		4.3292	0.38484	1	7759200	+		18417	17869	11398	11455	17690	17690					0.07224530363305348
LEKRIERGRA	10	Unmodified	_LEKRIERGRA_					0	0	0			REV__SARS2|p.R139W|1|0.1|ENSG00000104835|chr19:38921646-38921646|G/A|missense_variant	REV__SARS2|p.R139W|1|0.1|ENSG00000104835|chr19:38921646-38921646|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	614.1891479492188	2	614.367653	1226.72075	0.3198	0.00019648	-1.0891	-0.00066914	-0.76935	-0.00047266	614.3668072659391	48.153	1.02	48.153	47.646	48.666	0					30	19	2	0	0	0	0.88195	1	18321	18321		2.9952	1.3426	1	15363000	+		18418	11221	11399	11456	17691	17691					0.11646090677209031
LEKRRILT	8	Unmodified	_LEKRRILT_					0	0	0		ENST00000502820.1_1_4:3205777-3205837:+|nuORF	ENST00000502820.1_1_4:3205777-3205837:+|nuORF	ENST00000502820.1_1_4:3205777-3205837:+|nuORF	MSMS	HCT116MG_D190212_S2	2	515.2631225585938	2	514.832383	1027.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.643	1	46.532	46.032	47.032	-0.11121								0	0	0	0.84187	1	17772	17772		19.257	4.4187	1				18419	8431	11400	11457	17692	17692					0.13749417359508698
LEKRTLILTHF	11	Unmodified	_LEKRTLILTHF_					0	0	0		ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	MSMS	HCT116MG_D190212_S4	4	457.6083679199219	3	457.61	1369.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.8	1	52.46	51.96	52.96	-0.34023								0	0	0	0.95196	1	19694	19694		2.4348	1.22	1				18420	2411	11401	11458	17693	17693					0.13805871828071759
LEKSFSEF	8	Unmodified	_LEKSFSEF_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;HNRNPR|p.W594Gfs*15|1|0.23|ENSG00000125944|chr1:23310575-23310576|CA/-|frameshift_variant;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;HNRNPR|p.L367Qfs*19|1|0.05|ENSG00000125944|chr1:23313620-23313621|-/TTTAATCTCT|frameshift_variant	nc|ENSG00000125944|O43390-4|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-SECPEP	HCT116MG_D190212_S2	2	493.3240966796875	2	493.745108	985.475663	0.32241	0.00015919	0.76207	0.00037627	1.0845	0.00053545	493.74567461071285	40.977	0.25913	40.907	40.777	41.036	-0.069626					6	4	2	0	0	0	0.2314	1	15469	15469		37.974	16.227	1	9460600			18421	2918	11402	11459	17694	17694					-0.01765627576321549
LEKSKKERA	9	Unmodified	_LEKSKKERA_					0	0	0		nc|ENSG00000153487|Q9UK53-3|ING1;nc|ENSG00000153487|Q9UK53-4|ING1;nc|ENSG00000153487|Q9UK53-5|ING1;ENSG00000153487|ENST00000333219|ING1;nc|ENSG00000153487|Q9UK53|ING1	nc|ENSG00000153487|Q9UK53-3|ING1	nc|ENSG00000153487|Q9UK53-3|ING1	MULTI-MSMS	HCT116MG_D190212_S1	1	544.8250122070312	2	544.824755	1087.63496	0.57783	0.00031482	-0.41098	-0.00022391	0.16684	9.0901E-05	544.8244208494908	52.724	0.56513	52.724	52.383	52.948	0					17	10	2	0	0	0	0.69954	1	20145	20145		5.2969	0.39987	1	13875000			18422	4192	11403	11460	17695	17695					0.09464505771666154
LEKSKKERA	9	Unmodified	_LEKSKKERA_					0	0	0		nc|ENSG00000153487|Q9UK53-3|ING1;nc|ENSG00000153487|Q9UK53-4|ING1;nc|ENSG00000153487|Q9UK53-5|ING1;ENSG00000153487|ENST00000333219|ING1;nc|ENSG00000153487|Q9UK53|ING1	nc|ENSG00000153487|Q9UK53-3|ING1	nc|ENSG00000153487|Q9UK53-3|ING1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	544.824755	1087.63496	0.57783	0.00031482	-0.41098	-0.00022391	0.16684	9.0901E-05	544.8244208494908	52.724	0.56513	52.724	52.383	52.948	0	-0.15348	-0.00010646	NaN	5.2969	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13875000			18423	4192	11403	11460							0.09464505771666154
LEKSKRKKP	9	Unmodified	_LEKSKRKKP_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.292724609375	2	557.358765	1112.70298	0.2122	0.00011827	0.24521	0.00013667	0.45741	0.00025494	557.3587567395442	32.406	0.20796	32.176	32.046	32.254	-0.23009					7	3	3	0	0	0	0.25874	1	11962	11962		7.2892	1.0834	1	19481000			18424	6164	11404	11461	17696	17696					0.15113375422333775
LEKSQLRQ	8	Unmodified	_LEKSQLRQ_					0	0	0		ENST00000478515.1_1_3:4856448-4856586:+|nuORF	ENST00000478515.1_1_3:4856448-4856586:+|nuORF	ENST00000478515.1_1_3:4856448-4856586:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2906494140625	2	501.290548	1000.56654	0.48376	0.00024251	-0.016414	-8.2281E-06	0.46735	0.00023428	501.2904384609821	46.257	1.87	46.257	45.295	47.165	0					85	35	3	0	0	0	0.80542	1	17779	17779		10.824	0	1	90691000			18425	8222	11405	11462	17697	17697					0.06628261191804086
LEKSRIRLRRT	11	Unmodified	_LEKSRIRLRRT_					0	0	0		nc|ENSG00000236311|P0CAT3|TLX1NB	nc|ENSG00000236311|P0CAT3|TLX1NB	nc|ENSG00000236311|P0CAT3|TLX1NB	MSMS	HCT116MG_D190212_S1	1	714.1157836914062	2	714.449508	1426.88446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.064	1	58.064	57.564	58.564	0								0	0	0	0.95196	1	22356	22356		5.2969	0	1				18426	9647	11406	11463	17698	17698					0.1880968844805011
LEKSRVGP	8	Unmodified	_LEKSRVGP_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	MULTI-MSMS	HCT116MG_D190212_S3	3	443.26177978515625	2	443.261259	884.507966	0.16494	7.3111E-05	0.47577	0.00021089	0.64071	0.000284	443.2614979513663	33.568	0.2595	33.278	33.096	33.356	-0.29013					6	4	2	0	0	0	0.84415	1	12340	12340		6.3541	0.59368	1	3154900	+		18427	13651	11407	11464	17699	17699					0.06109204617337127
LEKSRVGP	8	Unmodified	_LEKSRVGP_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	MULTI-MATCH	HCT116MG_D190212_S2	2		2	443.261259	884.507966	0.50957	0.00022587	-0.37131	-0.00016459	0.13826	6.1283E-05	443.26103601668325	33.508	0.15341	33.315	33.225	33.378	-0.19297	0.01863	-0.00036751	NaN	6.3541	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8329600	+		18428	13651	11407	11464							0.06109204617337127
LEKSRVGP	8	Unmodified	_LEKSRVGP_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	443.261259	884.507966	0.16494	7.3111E-05	0.47577	0.00021089	0.64071	0.000284	443.2614979513663	33.568	0.2595	33.278	33.096	33.356	-0.29013	-0.01863	0.00038344	NaN	6.3541	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3154900	+		18429	13651	11407	11464							0.06109204617337127
LEKSSRKWRKR	11	Unmodified	_LEKSSRKWRKR_					0	0	0			REV__MCTP1|p.S398R|1|0.26|ENSG00000175471|chr5:94931971-94931971|A/C|missense_variant	REV__MCTP1|p.S398R|1|0.26|ENSG00000175471|chr5:94931971-94931971|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	737.4398803710938	2	737.441683	1472.86881	0.78351	0.00057779	-2.1591	-0.0015922	-1.3756	-0.0010144	737.4399285503856	56.505	0.72272	56.505	56.171	56.893	0					23	13	2	0	0	0	0.74191	1	21757	21757		0.96228	0.65524	1	13838000	+		18430	17011	11408	11465	17700	17700					0.1512940193099439
LEKSVFFLL	9	Unmodified	_LEKSVFFLL_					0	0	0		ENST00000406316.6_3_2:51255784-51255898:-|nuORF	ENST00000406316.6_3_2:51255784-51255898:-|nuORF	ENST00000406316.6_3_2:51255784-51255898:-|nuORF	MSMS	HCT116MG_D190212_S1	1	548.3276977539062	2	548.326068	1094.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.042	1	45.042	44.542	45.542	0								0	0	0	0.76818	1	17056	17056		7.2892	0.56607	1				18431	7715	11409	11466	17701	17701					0.09404961176642246
LEKTKPDL	8	Unmodified	_LEKTKPDL_					0	0	0			REV__MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant	REV__MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	472.2350769042969	2	472.276575	942.538597	0.38888	0.00018366	-1.5033	-0.00070996	-1.1144	-0.00052631	472.27562838478264	44.3	0.36322	43.993	43.708	44.071	-0.30759					9	6	2	0	0	0	0.84095	1	16444	16444		6.7232	0	1	4240700	+		18432	14077	11410	11467	17702	17702					0.06502938211713172
LEKTKPDL	8	Unmodified	_LEKTKPDL_					0	0	0			REV__MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant	REV__MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	472.27520751953125	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.818	1	42.443	41.943	42.943	-0.37493								0	0	0	0.8837	1	15751	15751		7.2892	0	1		+		18433	14077	11410	11467	17703	17703					0.06502938211713172
LEKTLALLRP	10	Unmodified	_LEKTLALLRP_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MSMS	HCT116MG_D190212_S4	4	385.24859619140625	3	385.248291	1152.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.985	1	47.616	47.116	48.116	-0.36907								0	0	0	0.96404	1	17756	17756		1.5923	0.13716	1				18434	1467	11411	11468	17704	17704					0.1527912636227029
LEKVLIGSAIS	11	Unmodified	_LEKVLIGSAIS_					0	0	0			REV__tr|U7SQU6|U7SQU6_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01587PE=3SV=1	REV__tr|U7SQU6|U7SQU6_FUSNUPeptidaseM20domain-containingprotein2OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01587PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	377.2332458496094	3	377.232418	1128.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.505	1	48.138	47.638	48.638	-0.36728								0	0	0	0.95996	1	17967	17967		1.1098	0	1		+		18435	17756	11412	11469	17705	17705					0.11623427371455364
LEKWKYPRKR	10	Unmodified	_LEKWKYPRKR_					0	0	0		ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	MSMS	HCT116MG_D190212_S1	1	702.419189453125	2	702.417146	1402.81974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.826	1	51.826	51.326	52.326	0								0	0	0	0.96521	1	19811	19811		1.3295	0.13619	1				18436	9110	11413	11470	17706	17706					0.1344411364204916
LEKYRLAQHID	11	Unmodified	_LEKYRLAQHID_					0	0	0			REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	MSMS	HCT116MG_D190212_S2	2	693.381591796875	2	693.380426	1384.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.842	1	54.654	54.154	55.154	-0.18797								0	0	0	0.94145	1	21124	21124		10.8	2.0541	1		+		18437	11321	11414	11471	17707	17707					0.06931520408920733
LELDEKTV	8	Unmodified	_LELDEKTV_					0	0	0			REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF	REV__ENST00000378770.1_1_4:190394307-190396341:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2966003417969	2	473.758215	945.501877	0.27306	0.00012937	-0.45566	-0.00021588	-0.1826	-8.651E-05	473.7579253955655	43.312	0.244	43.007	42.945	43.189	-0.30472					6	4	2	0	0	0	0.73076	1	16155	16155		19.439	1.304	1	4809600	+		18438	15252	11415	11472	17708	17708					0.02694641595144276
LELEKVNK	8	Unmodified	_LELEKVNK_					0	0	0		PKNOX1|p.E137K|1|0.12|ENSG00000160199|chr21:43013125-43013125|G/A|missense_variant	PKNOX1|p.E137K|1|0.12|ENSG00000160199|chr21:43013125-43013125|G/A|missense_variant	PKNOX1|p.E137K|1|0.12|ENSG00000160199|chr21:43013125-43013125|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	486.7905578613281	2	486.78985	971.565146	0.26905	0.00013097	0.96745	0.00047095	1.2365	0.00060191	486.7903118697832	35.658	0.25705	35.515	35.335	35.592	-0.14245					9	4	3	0	0	0	0.74197	1	13338	13338		18.146	0	1	19418000			18439	9751	11416	11473	17709	17709					0.07822627103041668
LELFRTKV	8	Unmodified	_LELFRTKV_					0	0	0		nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3	nc|ENSG00000102890|Q96BJ8-2|ELMO3	nc|ENSG00000102890|Q96BJ8-2|ELMO3	MSMS	HCT116MG_D190212_S4	4	503.3060607910156	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.361	1	35.975	35.475	36.475	-0.38558								0	0	0	0.8837	1	13303	13303		7.9102	0	1				18440	1855	11417	11474	17710	17710					0.09974923719619255
LELQQSQKRSL	11	Unmodified	_LELQQSQKRSL_					0	0	0			REV__ENST00000549810.1_1_12:94645207-94649700:+|nuORF	REV__ENST00000549810.1_1_12:94645207-94649700:+|nuORF	MSMS	HCT116MG_D190212_S2	2	665.3514404296875	2	665.377883	1328.74121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.582	1	38.497	37.997	38.997	-0.084618								0	0	0	0.9465	1	14496	14496		8.1555	0	1		+		18441	12117	11418	11475	17711	17711					0.08999216546317257
LELRESVLP	9	Unmodified	_LELRESVLP_					0	0	0			REV__ENST00000536443.1_1_11:63753967-63757776:+|nuORF	REV__ENST00000536443.1_1_11:63753967-63757776:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	528.30859375	2	528.308406	1054.60226	0.3681	0.00019447	0.055933	2.955E-05	0.42403	0.00022402	528.3082565059507	50.669	0.31249	50.355	50.177	50.49	-0.31381					15	5	4	0	0	0	0.26536	1	19112	19112		34.402	3.7652	1	24254000	+		18442	13166	11419	11476	17712	17712					0.07714298648807016
LELRMEYL	8	Unmodified	_LELRMEYL_					0	0	0		ENST00000413374.1_1_3:48711979-48716043:-|nuORF	ENST00000413374.1_1_3:48711979-48716043:-|nuORF	ENST00000413374.1_1_3:48711979-48716043:-|nuORF	MSMS	HCT116MG_D190212_S1	1	356.1913146972656	3	356.191565	1065.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.864	1	31.864	31.364	32.364	0								0	0	0	0.8837	1	11739	11739		1.6526	0	1				18443	7742	11420	11477	17713	17713					0.022712673683372486
LELRPSTF	8	Unmodified	_LELRPSTF_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.Y2955Ifs*3|1|0.29|ENSG00000143341|chr1:186082933-186082934|-/A|frameshift_variant;HMCN1|p.L3491Hfs*10|1|0.12|ENSG00000143341|chr1:186095419-186095420|-/ATAT|frameshift_variant;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENST00000493413.1_1_1:185934944-185947193:+|nuORF;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1;HMCN1|p.V1339Gfs*22|1|0.42|ENSG00000143341|chr1:186000186-186000186|T/-|frameshift_variant	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MSMS	HCT116MG_D190212_S3	3	481.7687683105469	2	481.768917	961.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.346	1	47.031	46.531	47.531	-0.31525								0	0	0	0.76512	1	17778	17778		25.399	3.6527	1				18444	3800	11421	11478	17714	17714					0.040980714145121055
LELRRARVRRH	11	Unmodified	_LELRRARVRRH_					0	0	0		ENST00000331923.8_1_21:34143954-34144149:-|nuORF	ENST00000331923.8_1_21:34143954-34144149:-|nuORF	ENST00000331923.8_1_21:34143954-34144149:-|nuORF	MSMS	HCT116MG_D190212_S1	1	731.7177124023438	2	731.452917	1460.89128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.029	1	41.029	40.529	41.529	0								0	0	0	0.95636	1	15438	15438		2.9952	0.26005	1				18445	7165	11422	11479	17715	17715					0.1792704611928002
LELSLFSH	8	Unmodified	_LELSLFSH_					0	0	0		WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant;WDFY4|p.E2278Kfs*20|2|0.3|ENSG00000128815|chr10:48873577-48873577|G/-|frameshift_variant;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF	WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant	WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	472.7560119628906	2	473.255643	944.496732	0.47383	0.00022424	2.298	0.0010875	2.7718	0.0013118	473.25658202032747	24.072	0.31102	23.689	23.56	23.871	-0.38324					7	5	2	0	0	0	0.26661	1	8617	8617		24.674	8.9057	1	10494000			18446	3014	11423	11480	17716	17716					0.022263825231902956
LELSRINLLY	10	Unmodified	_LELSRINLLY_					0	0	0		tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	tr|U7SEM5|U7SEM5_FUSNUCRISPRsystemsingle-strand-specificdeoxyribonucleaseCas10/Csm1(subtypeIII-A)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02355PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	617.3626098632812	2	617.363713	1232.71287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.356	1	31.107	30.607	31.607	-0.24883								0	0	0	0.87399	1	11564	11564		19.257	2.1441	1				18447	18286	11424	11481	17717	17717					0.10582518637056637
LELVNRLVY	9	Unmodified	_LELVNRLVY_					0	0	0		ENSG00000187260|ENST00000334493|WDR86;nc|ENSG00000187260|Q86TI4-1|WDR86	ENSG00000187260|ENST00000334493|WDR86	ENSG00000187260|ENST00000334493|WDR86	MULTI-MSMS	HCT116MG_D190212_S2	2	560.8150024414062	2	559.832049	1117.64954	0.60903	0.00034095	0.034165	1.9127E-05	0.64319	0.00036008	559.8319213907316	31.681	0.20833	31.432	31.302	31.51	-0.24883					8	3	3	0	0	0	0.66233	1	11643	11643		11.64	1.5664	1	24023000			18448	5932	11425	11482	17718	17718					0.09542577919796713
LELYKLMIP	9	Unmodified	_LELYKLMIP_					0	0	0			REV__EIF3A|p.S85Pfs*10|1|0.05|ENSG00000107581|chr10:119073565-119073566|-/GGTATGTGGG|frameshift_variant	REV__EIF3A|p.S85Pfs*10|1|0.05|ENSG00000107581|chr10:119073565-119073566|-/GGTATGTGGG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	560.3284912109375	2	560.327753	1118.64095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.159	1	47.791	47.291	48.291	-0.36775								0	0	0	0.76877	1	17827	17827		5.2307	0	1		+		18449	10447	11426	11483	17719	17719					0.08637887958980173
LEMFEEMTY	9	Unmodified	_LEMFEEMTY_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MSMS	HCT116MG_D190212_S3	3	596.7509155273438	2	596.748676	1191.4828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.113	1	43.805	43.305	44.305	-0.30759								0	0	0	0.768	1	16480	16480		7.9102	1.187	1		+		18450	11203	11427	11484	17720	17720					-0.10528399082409123
LENDPRIKLEK	11	Unmodified	_LENDPRIKLEK_					0	0	0			REV__ENST00000475407.5_2_9:127642811-127683993:-|nuORF	REV__ENST00000475407.5_2_9:127642811-127683993:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	677.8890991210938	2	677.888084	1353.76161	0.79525	0.00053909	0.041769	2.8315E-05	0.83702	0.00056741	677.8881234197968	31.674	0.36476	31.674	31.44	31.805	0					15	6	3	0	0	0	0.70378	1	11654	11654		30.703	11.982	1	16724000	+		18451	12154	11428	11485	17721	17721					0.0988838720613785
LENDPRIKLEK	11	Unmodified	_LENDPRIKLEK_					0	0	0			REV__ENST00000475407.5_2_9:127642811-127683993:-|nuORF	REV__ENST00000475407.5_2_9:127642811-127683993:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	452.2610778808594	3	452.261148	1353.76161	0.1441	6.5173E-05	-0.068251	-3.0867E-05	0.075854	3.4306E-05	452.26103653200437	31.644	0.36476	31.644	31.44	31.805	0					9	6	2	0	0	0	0.73535	1	11666	11666		8.7518	1.7147	1	10675000	+		18452	12154	11428	11485	17722	17722					0.0988838720613785
LENEKRKYDEV	11	Unmodified	_LENEKRKYDEV_					0	0	0		ENST00000514642.1_1_1:43002254-43055163:+|nuORF	ENST00000514642.1_1_1:43002254-43055163:+|nuORF	ENST00000514642.1_1_1:43002254-43055163:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	474.912353515625	3	474.912296	1421.71506	0.30126	0.00014307	-0.23987	-0.00011392	0.061397	2.9158E-05	474.91222314243265	26.267	0.20862	26.267	26.188	26.397	0					5	3	2	0	0	0	0.7224	1	9516	9516		13.535	3.2197	1	4576600			18453	8522	11429	11486	17723	17723					0.02106902584182535
LENEKRKYDEV	11	Unmodified	_LENEKRKYDEV_					0	0	0		ENST00000514642.1_1_1:43002254-43055163:+|nuORF	ENST00000514642.1_1_1:43002254-43055163:+|nuORF	ENST00000514642.1_1_1:43002254-43055163:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		3	474.912296	1421.71506	0.17337	8.2334E-05	0.66845	0.00031746	0.84182	0.00039979	474.9123259180664	26.642	0.15561	26.28	26.18	26.335	-0.36164	0.0067691	0.0011147	NaN	13.535	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10907000			18454	8522	11429	11486							0.02106902584182535
LENELQEPPQ	10	Unmodified	_LENELQEPPQ_					0	0	0			REV__nc|ENSG00000155034|Q96ME1-1|FBXL18	REV__nc|ENSG00000155034|Q96ME1-1|FBXL18	MSMS	HCT116MG_D190212_S3	3	598.7911987304688	2	598.793318	1195.57208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.855	1	20.89	20.39	21.39	0.034473								0	0	0	0.90072	1	7237	7237		15.739	1.3332	1		+		18455	17169	11430	11487	17724	17724					-0.017881048070194083
LENGAHAY	8	Unmodified	_LENGAHAY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;DNMT1|p.M337Wfs*8|1|0.2|ENSG00000130816|chr19:10160050-10160050|T/-|frameshift_variant	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-SECPEP	HCT116MG_D190212_S3	3	437.55291748046875	2	437.706317	873.398081	0.048445	2.1205E-05	-0.47927	-0.00020978	-0.43082	-0.00018857	437.70622477417214	20.654	0.26023	20.688	20.506	20.766	0.034473					7	4	2	0	0	0	0.26661	1	7163	7163		32.117	3.6301	1	2115200			18456	3106	11431	11488	17725	17725					-0.043682207218580515
LENGAHAY	8	Unmodified	_LENGAHAY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;DNMT1|p.M337Wfs*8|1|0.2|ENSG00000130816|chr19:10160050-10160050|T/-|frameshift_variant	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	437.706317	873.398081	0.0072114	3.1565E-06	-0.2732	-0.00011958	-0.26599	-0.00011643	437.7060590447221	21.319	0.15436	20.936	20.859	21.013	-0.38288	0.12364	9.5171E-05	NaN	32.117	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10110000			18457	3106	11431	11488							-0.043682207218580515
LENKRLNA	8	Unmodified	_LENKRLNA_					0	0	0			REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	479.7788391113281	2	479.277441	956.540328	0.2371	0.00011364	0.10219	4.8979E-05	0.33929	0.00016262	479.27729156848676	45.477	1.6526	45.384	44.683	46.336	-0.092472					69	31	3	0	0	0	0.7524	1	17352	17352		16.942	0	1	22436000	+		18458	13188	11432	11489	17726	17726					0.06031992020314192
LENKRLNA	8	Unmodified	_LENKRLNA_					0	0	0			REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	479.277441	956.540328	0.30198	0.00014473	0.11443	5.4843E-05	0.41641	0.00019958	479.27733473985813	45.696	0.78125	45.385	44.835	45.616	-0.31094	0.039591	6.2068E-05	NaN	16.942	28	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6813900	+		18459	13188	11432	11489							0.06031992020314192
LENLDTLLLQ	10	Unmodified	_LENLDTLLLQ_					0	0	0		GP1BA|p.F208Lfs*48|1|0.24|ENSG00000185245|chr17:4933223-4933223|T/-|frameshift_variant;GP1BA|p.S420Afs*52|1|0.4|ENSG00000185245|chr17:4933857-4933857|C/-|frameshift_variant;GP1BA|p.T494Pfs*59|1|0.4|ENSG00000185245|chr17:4934078-4934078|A/-|frameshift_variant;GP1BA|p.L531Wfs*22|1|0.36|ENSG00000185245|chr17:4934191-4934191|C/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA	GP1BA|p.F208Lfs*48|1|0.24|ENSG00000185245|chr17:4933223-4933223|T/-|frameshift_variant	GP1BA|p.F208Lfs*48|1|0.24|ENSG00000185245|chr17:4933223-4933223|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	586.0252685546875	2	586.332079	1170.6496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.33	1	41.954	41.454	42.454	-0.37565								0	0	0	0.84701	1	15554	15554		22.736	1.1993	1				18460	5810	11433	11490	17727	17727					0.07110533129161922
LENLNSLQF	9	Unmodified	_LENLNSLQF_					0	0	0		ENST00000362003.9_1_4:760105-760228:+|nuORF	ENST00000362003.9_1_4:760105-760228:+|nuORF	ENST00000362003.9_1_4:760105-760228:+|nuORF	MSMS	HCT116MG_D190212_S3	3	539.3095703125	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.991	1	48.675	48.175	49.175	-0.31596								0	0	0	0.76603	1	18439	18439		14.838	0.93222	1				18461	7369	11434	11491	17728	17728					0.01501135235048423
LENMPSAEA	9	Unmodified	_LENMPSAEA_					0	0	0		ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENSG00000132912|ENST00000447998|DCTN4	ENSG00000132912|ENST00000447998|DCTN4	MULTI-MSMS	HCT116MG_D190212_S1	1	961.4302368164062	1	961.429523	960.422247	0.89595	0.0008614	0.017246	1.6581E-05	0.9132	0.00087798	961.4295730630706	30.737	0.20809	30.737	30.607	30.815	0					6	3	2	0	0	0	0.016412	1	11300	11300		100.09	56.232	1	5543900			18462	3218	11435	11492	17729	17729					-0.0595474835049572
LENMPSAEA	9	Unmodified	_LENMPSAEA_					0	0	0		ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENSG00000132912|ENST00000447998|DCTN4	ENSG00000132912|ENST00000447998|DCTN4	MULTI-MSMS	HCT116MG_D190212_S2	2	961.431640625	1	961.429523	960.422247	0.55175	0.00053047	-0.30333	-0.00029163	0.24842	0.00023884	961.4291976786167	30.904	0.25974	30.637	30.508	30.768	-0.26704					8	4	2	0	0	0	0.01386	1	11400	11400		103.82	49.991	1	24453000			18463	3218	11435	11492	17730	17730					-0.0595474835049572
LENPKKYIP	9	Unmodified	_LENPKKYIP_					0	0	0		ENSG00000172115|ENST00000305786|CYCS;CON__P62894	ENSG00000172115|ENST00000305786|CYCS	ENSG00000172115|ENST00000305786|CYCS	MULTI-MSMS	HCT116MG_D190212_S2	2	551.3184204101562	2	551.318774	1100.623	0.46712	0.00025753	0.1137	6.2686E-05	0.58082	0.00032022	551.3188559988331	33.815	0.36397	33.622	33.43	33.794	-0.19297					12	6	2	0	0	0	0.10554	1	12569	12569		70.332	26.56	1	13611000		+	18464	5235	11436	11493	17731	17731					0.07670889028463534
LENRVRRF	8	Unmodified	_LENRVRRF_					0	0	0			REV__CEP152|p.I1277Lfs*20|1|0.2|ENSG00000103995|chr15:48744246-48744246|T/-|frameshift_variant	REV__CEP152|p.I1277Lfs*20|1|0.2|ENSG00000103995|chr15:48744246-48744246|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	545.3167114257812	2	545.317432	1088.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.885	1	47.57	47.07	48.07	-0.31564								0	0	0	0.8837	1	17995	17995		8.5933	1.304	1		+		18465	10157	11437	11494	17732	17732					0.07954478414194455
LENVRDQL	8	Unmodified	_LENVRDQL_					0	0	0			REV__nc|ENSG00000010295|Q0D2I5|IFFO1	REV__nc|ENSG00000010295|Q0D2I5|IFFO1	MULTI-MSMS	HCT116MG_D190212_S4	4	493.7668762207031	2	493.766906	985.519259	0.15454	7.6308E-05	0.47954	0.00023678	0.63408	0.00031309	493.76679688025575	38.743	0.30688	38.362	38.232	38.539	-0.38163					8	5	2	0	0	0	0.20876	1	14239	14239		71.922	3.8416	1	4797800	+		18466	10514	11438	11495	17733	17733					0.025919819208070294
LENYKEGQSTQ	11	Unmodified	_LENYKEGQSTQ_					0	0	0		CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant;nc|ENSG00000188596|Q96N23-2|CFAP54;ENSG00000188596|ENST00000524981|CFAP54	CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	CFAP54|p.Q2612Rfs*5|1|0.32|ENSG00000188596|chr12:96753887-96753887|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	648.807861328125	2	648.806956	1295.59936	0.54157	0.00035138	-0.23416	-0.00015192	0.30741	0.00019945	648.8068002096668	31.403	1.0405	31.133	30.389	31.43	-0.27028					37	19	3	0	0	0	0.73156	1	11527	11527		10.151	0.76745	1	5868700			18467	417	11439	11496	17734	17734					-0.03661621266678594
LEPALFFLTL	10	Unmodified	_LEPALFFLTL_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MSMS	HCT116MG_D190212_S1	1	582.503662109375	2	582.339175	1162.6638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.096	1	48.096	47.596	48.596	0								0	0	0	0.94551	1	18291	18291		5.7319	1.4026	1		+		18468	12105	11440	11497	17735	17735					0.0889723034808867
LEPENEKI	8	Unmodified	_LEPENEKI_					0	0	0		SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant;SAFB2|p.P839Lfs*16|1|0.2|ENSG00000130254|chr19:5590287-5590287|G/-|frameshift_variant;SAFB2|p.L837Cfs*18|1|0.18|ENSG00000130254|chr19:5590295-5590295|C/-|frameshift_variant;ENSG00000130254|ENST00000252542|SAFB2;nc|ENSG00000160633|Q15424-2|SAFB;SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant;SAFB|p.D823Tfs*19|1|0.2|ENSG00000160633|chr19:5667361-5667361|G/-|frameshift_variant;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB	SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant;nc|ENSG00000160633|Q15424-2|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	MSMS	HCT116MG_D190212_S4	4	486.2546081542969	2	486.25584	970.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.984	1	37.601	37.101	38.101	-0.38283								0	0	0	0.8837	1	13906	13906		9.3474	0	1				18469	9516;3066	11441	11498	17736	17736					0.01069757452387421
LEPETKGA	8	Unmodified	_LEPETKGA_					0	0	0		ENST00000258083.2_1_2:73455291-73455504:-|nuORF	ENST00000258083.2_1_2:73455291-73455504:-|nuORF	ENST00000258083.2_1_2:73455291-73455504:-|nuORF	MSMS	HCT116MG_D190212_S3	3	422.72454833984375	2	422.724175	843.433798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.327	1	25.221	24.721	25.721	-0.10618								0	0	0	0.82692	1	9037	9037		20.454	5.8719	1				18470	6829	11442	11499	17737	17737					0.005818167351549164
LEPEVPTP	8	Unmodified	_LEPEVPTP_					0	0	0		nc|ENSG00000283787|A8MZF0|PRR33;ENSG00000283787|ENST00000640310|PRR33	nc|ENSG00000283787|A8MZF0|PRR33	nc|ENSG00000283787|A8MZF0|PRR33	MSMS	HCT116MG_D190212_S3	3	441.2347717285156	2	441.234376	880.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.559	1	35.259	34.759	35.759	-0.29922								0	0	0	0.8837	1	13117	13117		14.582	3.4672	1				18471	6705	11443	11500	17738	17738					0.009189873949480898
LEPIVTPP	8	Unmodified	_LEPIVTPP_					0	0	0		ENST00000568578.5_1_X:135961483-135962785:-|nuORF	ENST00000568578.5_1_X:135961483-135962785:-|nuORF	ENST00000568578.5_1_X:135961483-135962785:-|nuORF	MSMS	HCT116MG_D190212_S1	1	433.2539978027344	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.28	1	37.28	36.78	37.78	0								0	0	0	0.8837	1	13923	13923		5.7604	0	1				18472	8873	11444	11501	17739	17739					0.058001681542691585
LEPPLRGGAPG	11	Unmodified	_LEPPLRGGAPG_					0	0	0		ENST00000576995.1_1_17:79079719-79080836:+|nuORF	ENST00000576995.1_1_17:79079719-79080836:+|nuORF	ENST00000576995.1_1_17:79079719-79080836:+|nuORF	MSMS	HCT116MG_D190212_S4	4	532.2969360351562	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.27	1	43.897	43.397	44.397	-0.37373								0	0	0	0.95023	1	16304	16304		6.2058	0.97511	1				18473	8929	11445	11502	17740	17740					0.05340547708851773
LEPRKMYQY	9	Unmodified	_LEPRKMYQY_					0	0	0		nc|ENSG00000117322|P20023-2|CR2;nc|ENSG00000117322|P20023|CR2;nc|ENSG00000117322|P20023-4|CR2;ENSG00000117322|ENST00000367057|CR2	nc|ENSG00000117322|P20023-2|CR2	nc|ENSG00000117322|P20023-2|CR2	MSMS	HCT116MG_D190212_S3	3	614.4043579101562	2	614.313166	1226.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.021	1	53.722	53.222	54.222	-0.29946								0	0	0	0.76818	1	20460	20460		7.2892	1.0834	1				18474	2569	11446	11503	17741	17741					0.007537436626989802
LEPRKVHL	8	Unmodified	_LEPRKVHL_					0	0	0		KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant;ENSG00000183655|ENST00000337975|KLHL25	KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	KLHL25|p.E514Gfs*5|1|0.18|ENSG00000183655|chr15:85768252-85768270|CGCGTCCACTGGTTGGTCT/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	496.3043212890625	2	496.306001	990.597449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.138	1	45.826	45.326	46.326	-0.31237								0	0	0	0.8837	1	17294	17294		9.3474	0.75416	1				18475	5730	11447	11504	17742	17742					0.10177459296698999
LEPRYKPDP	9	Unmodified	_LEPRYKPDP_					0	0	0			REV__ENST00000328663.8_1_5:68661579-68665559:-|nuORF	REV__ENST00000328663.8_1_5:68661579-68665559:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	372.17626953125	3	372.201229	1113.58186	-0.058713	-2.1853E-05	-0.060711	-2.2597E-05	-0.11942	-4.445E-05	372.2011770290349	34.722	0.25375	34.336	34.237	34.491	-0.38579					6	4	2	0	0	0	0.26328	1	12665	12665		2.4985	0.75621	1	2805600	+		18476	14916	11448	11505	17743	17743					0.029611279890104925
LEPSWRRW	8	Unmodified	_LEPSWRRW_					0	0	0			REV__ENST00000429642.1_3_10:1094327-1094705:-|nuORF	REV__ENST00000429642.1_3_10:1094327-1094705:-|nuORF	MSMS	HCT116MG_D190212_S1	1	377.2014465332031	3	377.201564	1128.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.954	1	58.954	58.454	59.454	0								0	0	0	0.8837	1	22723	22723		0.40072	0	1		+		18477	15575	11449	11506	17744	17744					0.023713871485597338
LEPVRRRRRRR	11	Unmodified	_LEPVRRRRRRR_					0	0	0			REV__ENST00000220562.8_1_8:28559112-28571023:+|nuORF	REV__ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	HCT116MG_D190212_S3	3	775.4872436523438	2	775.490365	1548.96618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.334	1	43.029	42.529	43.529	-0.30472								0	0	0	0.96141	1	16166	16166		0.35063	0.35063	1		+		18478	14519	11450	11507	17745	17745					0.2136522865050665
LEQASIVKK	9	Unmodified	_LEQASIVKK_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	HCT116MG_D190212_S3	3	508.3112487792969	2	508.310949	1014.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.385	1	46.073	45.573	46.573	-0.31237								0	0	0	0.69648	1	17390	17390		19.257	1.1106	1				18479	1620	11451	11508	17746	17746					0.10062602511425212
LEQDNIKQA	9	Unmodified	_LEQDNIKQA_					0	0	0		nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3;ENSG00000119041|ENST00000263956|GTF3C3	nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7774658203125	2	529.77747	1057.54039	0.36633	0.00019407	-0.036939	-1.9569E-05	0.32939	0.0001745	529.7771330204528	21.37	0.25865	20.987	20.859	21.117	-0.38288					8	4	3	0	0	0	0.047849	1	7544	7544		75.761	28.012	1	14108000			18480	2624	11452	11509	17747	17747					0.01391947229649304
LEQDNIKQA	9	Unmodified	_LEQDNIKQA_					0	0	0		nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3;ENSG00000119041|ENST00000263956|GTF3C3	nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	MULTI-MSMS	HCT116MG_D190212_S3	3	529.7777099609375	2	529.77747	1057.54039	0.30567	0.00016194	0.18729	9.9222E-05	0.49296	0.00026116	529.7776097171759	20.851	0.26017	20.886	20.714	20.975	0.034473					10	4	3	0	0	0	0.0096523	1	7243	7243		114.2	42.279	1	5509500			18481	2624	11452	11509	17748	17748					0.01391947229649304
LEQDNIKQA	9	Unmodified	_LEQDNIKQA_					0	0	0		nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3;ENSG00000119041|ENST00000263956|GTF3C3	nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	529.77747	1057.54039	0.43743	0.00023174	-0.098897	-5.2393E-05	0.33853	0.00017934	529.7771345765154	20.945	0.2114	20.945	20.8	21.012	0	0.0055587	-0.00021319	NaN	114.2	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2231600			18482	2624	11452	11509							0.01391947229649304
LEQEIATY	8	Unmodified	_LEQEIATY_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;CON__Q9Z2K1;CON__Q6IFX2;CON__Q9D312;ENSG00000171431|ENST00000167588|KRT20;CON__P35900;ENST00000417510.5_1_17:16722254-16722455:-|nuORF;CON__Q8N1A0;ENSG00000213424|ENST00000394052|KRT222;nc|ENSG00000264058|Q8N1A0-2|KRT222;ENST00000581564.1_1_17:38813911-38818272:-|nuORF;CON__Q61782;CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	CON__P08727;CON__P08730-1;CON__P19001;ENSG00000128422|ENST00000311208|KRT17	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S1	1	966.4794311523438	1	966.477854	965.470577	0.69772	0.00067433	0.16125	0.00015584	0.85897	0.00083017	966.4782230424528	36.286	0.3716	36.286	36.046	36.417	0					12	6	3	0	0	0	0.068362	1	13512	13512		103.75	7.4635	1	22137000		+	18483	559;563;534;567	11453	11510	17749	17749					-0.013539314389504398
LEQEIATY	8	Unmodified	_LEQEIATY_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;CON__Q9Z2K1;CON__Q6IFX2;CON__Q9D312;ENSG00000171431|ENST00000167588|KRT20;CON__P35900;ENST00000417510.5_1_17:16722254-16722455:-|nuORF;CON__Q8N1A0;ENSG00000213424|ENST00000394052|KRT222;nc|ENSG00000264058|Q8N1A0-2|KRT222;ENST00000581564.1_1_17:38813911-38818272:-|nuORF;CON__Q61782;CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	CON__P08727;CON__P08730-1;CON__P19001;ENSG00000128422|ENST00000311208|KRT17	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S2	2	966.4790649414062	1	966.477854	965.470577	0.81067	0.0007835	-0.0051165	-4.945E-06	0.80556	0.00077855	966.477778054271	36.328	0.46635	36.2	35.967	36.434	-0.12799					18	8	3	0	0	0	0.057078	1	13587	13587		115.69	7.695	1	160090000		+	18484	559;563;534;567	11453	11510	17750	17750					-0.013539314389504398
LEQEIATY	8	Unmodified	_LEQEIATY_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q3ZAW8;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;CON__Q9Z2K1;CON__Q6IFX2;CON__Q9D312;ENSG00000171431|ENST00000167588|KRT20;CON__P35900;ENST00000417510.5_1_17:16722254-16722455:-|nuORF;CON__Q8N1A0;ENSG00000213424|ENST00000394052|KRT222;nc|ENSG00000264058|Q8N1A0-2|KRT222;ENST00000581564.1_1_17:38813911-38818272:-|nuORF;CON__Q61782;CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	CON__P08727;CON__P08730-1;CON__P19001;ENSG00000128422|ENST00000311208|KRT17	CON__P08727	MSMS	HCT116MG_D190212_S2	2	483.7433166503906	2	483.742565	965.470577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.412	1	36.284	35.784	36.784	-0.12799								0	0	0	0.21862	1	13615	13615		65.235	27.261	1			+	18485	559;563;534;567	11453	11510	17751	17751					-0.013539314389504398
LEQEKFSL	8	Unmodified	_LEQEKFSL_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MSMS	HCT116MG_D190212_S2	2	497.26617431640625	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.621	1	36.506	36.006	37.006	-0.11478								0	0	0	0.67283	1	13700	13700		32.786	0.66872	1		+		18486	10997	11454	11511	17752	17752					0.02130347832053303
LEQHIFVM	8	Unmodified	_LEQHIFVM_					0	0	0		ENST00000544440.6_1_13:77625173-77629724:-|nuORF	ENST00000544440.6_1_13:77625173-77629724:-|nuORF	ENST00000544440.6_1_13:77625173-77629724:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	509.26409912109375	2	508.76532	1015.51609	0.41799	0.00021266	-3.0751	-0.0015645	-2.6571	-0.0013518	509.264265536117	33.685	0.48977	33.3	32.976	33.466	-0.38426					13	11	2	0	0	0	0.69862	1	12266	12266		23.148	3.8914	1	3468600			18487	8706	11455	11512	17753	17753					0.00895015542459987
LEQKLEEIEKK	11	Unmodified	_LEQKLEEIEKK_					0	0	0			REV__ENSG00000164022|ENST00000672341|AIMP1	REV__ENSG00000164022|ENST00000672341|AIMP1	MULTI-MSMS	HCT116MG_D190212_S4	4	694.3966064453125	2	693.895574	1385.7766	0.80567	0.00055905	-0.62774	-0.00043558	0.17794	0.00012347	694.3963957894878	46.043	0.20338	45.671	45.553	45.757	-0.37206					14	8	3	0	0	0	0.68267	1	17010	17010		26.268	10.119	1	16934000	+		18488	12968	11456	11513	17754	17754					0.09913834283474898
LEQKLKERQPD	11	Unmodified	_LEQKLKERQPD_					0	0	0			REV__LLGL1|p.R436Pfs*18|1|0.37|ENSG00000131899|chr17:18235484-18235485|-/G|frameshift_variant	REV__LLGL1|p.R436Pfs*18|1|0.37|ENSG00000131899|chr17:18235484-18235485|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	692.3807983398438	2	692.383165	1382.75178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.31	1	54.992	54.492	55.492	-0.31774								0	0	0	0.95113	1	20706	20706		5.7319	2.7366	1		+		18489	11974	11457	11514	17755	17755					0.0757119920074274
LEQLDRGDG	9	Unmodified	_LEQLDRGDG_					0	0	0			REV__nc|ENSG00000198910|P32004-3|L1CAM	REV__nc|ENSG00000198910|P32004-3|L1CAM	MSMS	HCT116MG_D190212_S4	4	501.74786376953125	2	501.74617	1001.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.082	1	36.697	36.197	37.197	-0.38486								0	0	0	0.76603	1	13595	13595		14.838	1.3304	1		+		18490	14163	11458	11515	17756	17756					-0.022891988385026707
LEQPPRQRR	9	Unmodified	_LEQPPRQRR_					0	0	0		sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1;sp|F5HE12|UL35_HCMVMTegumentproteinUL35OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL35PE=3SV=1	sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	MSMS	HCT116MG_D190212_S4	4	590.3370971679688	2	590.338895	1178.66324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.733	1	41.356	40.856	41.856	-0.37637								0	0	0	0.76967	1	15313	15313		2.0598	0.21551	1				18491	18198	11459	11516	17757	17757					0.08105248471611048
LEQQHLWQLKE	11	Unmodified	_LEQQHLWQLKE_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	MSMS	HCT116MG_D190212_S4	4	726.3841552734375	2	726.385708	1450.75686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.181	1	33.795	33.295	34.295	-0.38558								0	0	0	0.95196	1	12471	12471		5.2969	0.39987	1		+		18492	11111	11460	11517	17758	17758					0.04951503063398377
LEQQKQLL	8	Unmodified	_LEQQKQLL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000487258.5_1_7:91722364-91739470:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	HCT116MG_D190212_S2	2	500.29486083984375	2	500.295299	998.576045	0.42849	0.00021437	-0.5205	-0.0002604	-0.09201	-4.6032E-05	500.295055361231	41.373	0.3582	41.305	41.089	41.447	-0.068199					12	6	3	0	0	0	0.19352	1	15641	15641		74.929	0	1	59877000			18493	2979	11461	11518	17759	17759					0.07670029477333173
LEQRKKRALE	10	Unmodified	_LEQRKKRALE_					0	0	0			REV__ENST00000436075.1_1_22:20837457-20837766:-|nuORF	REV__ENST00000436075.1_1_22:20837457-20837766:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	635.385009765625	2	635.883136	1269.75172	0.67621	0.00042999	-0.71534	-0.00045487	-0.039129	-2.4882E-05	636.3848181353828	46.644	0.15625	46.33	46.229	46.385	-0.31405					4	2	2	0	0	0	0.30895	1	17508	17508		10.074	0.6908	1	2978900	+		18494	15621	11462	11519	17760	17760					0.12763243991457784
LEQRLVQKQH	10	Unmodified	_LEQRLVQKQH_					0	0	0			REV__ZCCHC14|p.N110Mfs*18|1|0.34|ENSG00000140948|chr16:87433156-87433156|T/-|frameshift_variant	REV__ZCCHC14|p.N110Mfs*18|1|0.34|ENSG00000140948|chr16:87433156-87433156|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	639.86572265625	2	639.867486	1277.72042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.266	1	50.266	49.766	50.766	0								0	0	0	0.95507	1	19175	19175		3.5965	0.31518	1		+		18495	12317	11463	11520	17761	17761					0.09266670957322276
LEQRMERY	8	Unmodified	_LEQRMERY_					0	0	0		CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant;nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000585896.5_1_19:14020678-14030767:+|nuORF;ENST00000589138.5_1_19:14029331-14037891:+|nuORF	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	CC2D1A|p.G898Vfs*45|1|0.32|ENSG00000132024|chr19:13929638-13929638|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	562.7777099609375	2	562.77949	1123.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.952	1	35.824	35.324	36.324	-0.12799								0	0	0	0.68119	1	13429	13429		32.117	8.0964	1				18496	340	11464	11521	17762	17762					-0.012402865482499692
LEQVFSKY	8	Unmodified	_LEQVFSKY_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	HCT116MG_D190212_S2	2	507.2687072753906	2	507.26875	1012.52295	0.3011	0.00015274	-0.036898	-1.8717E-05	0.2642	0.00013402	507.2685191785404	38.761	0.26208	38.677	38.492	38.754	-0.084618					9	4	3	0	0	0	0.094232	1	14575	14575		96.367	24.444	1	24720000			18497	1638	11465	11522	17763	17763					0.017186516946708252
LEQVFSKY	8	Unmodified	_LEQVFSKY_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	HCT116MG_D190212_S3	3	507.2687072753906	2	507.26875	1012.52295	0.19381	9.8311E-05	0.59669	0.00030268	0.79049	0.00040099	507.2686637493251	38.991	0.31179	38.69	38.456	38.768	-0.30137					9	5	3	0	0	0	0.20346	1	14473	14473		72.968	26.947	1	7207400			18498	1638	11465	11522	17764	17764					0.017186516946708252
LEQVFSKY	8	Unmodified	_LEQVFSKY_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MSMS	HCT116MG_D190212_S4	4	507.2690124511719	2	507.26875	1012.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.165	1	38.785	38.285	39.285	-0.38055								0	0	0	0.25831	1	14381	14381		60.074	15.667	1				18499	1638	11465	11522	17765	17765					0.017186516946708252
LEQWFSEP	8	Unmodified	_LEQWFSEP_					0	0	0		SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant;SPEF2|p.I1348Nfs*12|1|0.34|ENSG00000152582|chr5:35773981-35773982|-/A|frameshift_variant;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;SPEF2|p.N1040Tfs*10|1|0.32|ENSG00000152582|chr5:35739972-35739972|A/-|frameshift_variant;ENST00000503074.1_1_5:35700583-35709228:+|nuORF	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	518.24169921875	2	518.242732	1034.47091	0.55069	0.00028539	-1.0979	-0.00056899	-0.54724	-0.0002836	518.7438071452601	20.708	0.62821	20.708	20.383	21.012	0					16	11	2	0	0	0	0.72197	1	7253	7253		20.454	2.3073	1	7736700			18500	4157	11466	11523	17766	17766					-0.044945117190763995
LERAKKKMVL	10	Unmodified	_LERAKKKMVL_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.E1321Rfs*17|1|0.48|ENSG00000153922|chr5:98870704-98870705|-/T|frameshift_variant;CHD1|p.E1321Kfs*22|3|0.3|ENSG00000153922|chr5:98870705-98870705|T/-|frameshift_variant;CHD1|p.V947Tfs*15|1|0.21|ENSG00000153922|chr5:98882003-98882004|CT/-|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MSMS	HCT116MG_D190212_S4	4	608.3861083984375	2	608.383926	1214.7533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.789	1	38.407	37.907	38.907	-0.38163								0	0	0	0.96377	1	14229	14229		1.6526	0	1				18501	4198	11467	11524	17767	17767					0.15451161755822795
LERDPIPAA	9	Unmodified	_LERDPIPAA_					0	0	0		ENST00000493232.5_1_7:2583168-2583660:-|nuORF;nc|ENSG00000106009|Q6PJG6-2|BRAT1;ENST00000469750.5_1_7:2583168-2595320:-|nuORF;ENSG00000106009|ENST00000340611|BRAT1	ENST00000493232.5_1_7:2583168-2583660:-|nuORF	ENST00000493232.5_1_7:2583168-2583660:-|nuORF	MSMS	HCT116MG_D190212_S3	3	491.27178955078125	2	491.271824	980.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.554	1	32.276	31.776	32.776	-0.27841								0	0	0	0.76077	1	11936	11936		16.149	2.2431	1				18502	2053	11468	11525	17768	17768					0.03805169926170038
LERGSSIQII	10	Unmodified	_LERGSSIQII_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	MULTI-MSMS	HCT116MG_D190212_S1	1	558.3248291015625	2	558.324588	1114.63462	0.52462	0.00029291	0.31133	0.00017382	0.83594	0.00046673	558.3246104970124	52.922	0.46269	52.922	52.69	53.153	0					15	8	3	0	0	0	0.86862	1	20240	20240		6.2058	1.8765	1	171050000	+		18503	13387	11469	11526	17769	17769					0.081890860518115
LERGTKRRYRL	11	Unmodified	_LERGTKRRYRL_					0	0	0		ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1;ESPL1|p.Q1311Rfs*21|1|0.46|ENSG00000135476|chr12:53286668-53286669|AG/-|frameshift_variant	ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	MSMS	HCT116MG_D190212_S4	4	724.43505859375	2	724.433858	1446.85316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.006	1	47.637	47.137	48.137	-0.36907								0	0	0	0.96141	1	17765	17765		0.35063	0	1				18504	3352	11470	11527	17770	17770					0.147611154139895
LERIFKDRS	9	Unmodified	_LERIFKDRS_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	HCT116MG_D190212_S2	2	582.330322265625	2	582.330205	1162.64586	0.69113	0.00040247	-0.2214	-0.00012893	0.46973	0.00027354	582.3299489093506	31.753	0.25875	31.504	31.354	31.613	-0.24883					7	4	2	0	0	0	0.22506	1	11754	11754		15.248	0	1	13238000	+		18505	14035	11471	11528	17771	17771					0.07103908145927562
LERKLIPIP	9	Unmodified	_LERKLIPIP_					0	0	0		ENST00000500813.6_1_4:183811617-183811782:-|nuORF	ENST00000500813.6_1_4:183811617-183811782:-|nuORF	ENST00000500813.6_1_4:183811617-183811782:-|nuORF	MSMS	HCT116MG_D190212_S4	4	360.2381286621094	3	360.237615	1077.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.015	1	57.726	57.226	58.226	-0.28879								0	0	0	0.77019	1	21792	21792		0.23584	0	1				18506	8422	11472	11529	17772	17772					0.15527758679149883
LERKLKRILY	10	Unmodified	_LERKLKRILY_					0	0	0		tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	tr|U7SP67|U7SP67_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01745PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	666.3115234375	2	666.429722	1330.84489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.965	1	46.651	46.151	47.151	-0.31405								0	0	0	0.95351	1	17624	17624		3.9444	1.2092	1				18507	18376	11473	11530	17773	17773					0.19270168444677438
LERKLTKR	8	Unmodified	_LERKLTKR_					0	0	0		CCDC27|p.L639Cfs*8|2|0.39|ENSG00000162592|chr1:3771461-3771461|C/-|frameshift_variant;ENSG00000162592|ENST00000294600|CCDC27	CCDC27|p.L639Cfs*8|2|0.39|ENSG00000162592|chr1:3771461-3771461|C/-|frameshift_variant	CCDC27|p.L639Cfs*8|2|0.39|ENSG00000162592|chr1:3771461-3771461|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	522.1350708007812	2	522.337833	1042.66111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.44	1	46.069	45.569	46.569	-0.37134								0	0	0	0.8837	1	17146	17146		2.5775	0	1				18508	350	11474	11531	17774	17774					0.14148819733804885
LERKTFTLL	9	Unmodified	_LERKTFTLL_					0	0	0			REV__ENSG00000197980|ENST00000356539|LEKR1	REV__ENSG00000197980|ENST00000356539|LEKR1	MSMS	HCT116MG_D190212_S1	1	374.2284851074219	3	374.229008	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.126	1	39.126	38.626	39.626	0								0	0	0	0.76781	1	14669	14669		5.2969	0	1		+		18509	14102	11475	11532	17775	17775					0.11014864436856442
LERKTFTLL	9	Unmodified	_LERKTFTLL_					0	0	0			REV__ENSG00000197980|ENST00000356539|LEKR1	REV__ENSG00000197980|ENST00000356539|LEKR1	MSMS	HCT116MG_D190212_S3	3	374.2283630371094	3	374.229008	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.329	1	39.028	38.528	39.528	-0.30137								0	0	0	0.76641	1	14596	14596		8.7454	0	1		+		18510	14102	11475	11532	17776	17776					0.11014864436856442
LERLKKIRAHR	11	Unmodified	_LERLKKIRAHR_					0	0	0		ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	MSMS	HCT116MG_D190212_S1	1	710.455078125	2	710.454594	1418.89463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.224	1	47.224	46.724	47.724	0								0	0	0	0.95772	1	17938	17938		2.2828	0	1				18511	6505	11476	11533	17777	17777					0.20194296173303883
LERQLKRRNAN	11	Unmodified	_LERQLKRRNAN_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MULTI-SECPEP	HCT116MG_D190212_S3	3	466.9420471191406	3	466.607652	1396.80113	0.24101	0.00011245	0.5165	0.000241	0.7575	0.00035346	466.6078061530856	54.382	0.62735	54.086	53.772	54.4	-0.29587					19	11	2	0	0	0	0.36618	1	20565	20565		0.08335	0	1	2485000	+		18512	12028	11477	11534	17778	17778					0.11859952000236262
LERQLKRRNAN	11	Unmodified	_LERQLKRRNAN_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	466.607652	1396.80113	0.1675	7.8157E-05	0.93537	0.00043645	1.1029	0.00051461	466.6080396381488	54.073	2.2616	53.884	52.604	54.865	-0.1894	-0.1176	3.1779E-05	NaN	0.08335	123	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109990000	+		18513	12028	11477	11534							0.11859952000236262
LERQQKKKRL	10	Unmodified	_LERQQKKKRL_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MSMS	HCT116MG_D190212_S1	1	663.5066528320312	2	663.920052	1325.82555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.912	1	29.912	29.412	30.412	0								0	0	0	0.95507	1	10951	10951		3.5965	0.60125	1				18514	3644	11478	11535	17779	17779					0.1756721215374455
LERQQRRRFRF	11	Unmodified	_LERQQRRRFRF_					0	0	0		ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	MSMS	HCT116MG_D190212_S1	1	796.45556640625	2	796.455656	1590.89676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.562	1	47.562	47.062	48.062	0								0	0	0	0.95954	1	18075	18075		1.3295	1.3295	1				18515	9046	11479	11536	17780	17780					0.12494724911107369
LERRHKEPL	9	Unmodified	_LERRHKEPL_					0	0	0			REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	589.7739868164062	2	589.343646	1176.67274	0.51513	0.00030359	-0.8442	-0.00049752	-0.32906	-0.00019393	589.343051018967	47.697	0.4461	47.697	47.395	47.841	0					12	8	2	0	0	0	0.25445	1	18045	18045		2.0598	0	1	11649000	+		18516	14493	11480	11537	17781	17781					0.09147016757151505
LERRVKRL	8	Unmodified	_LERRVKRL_					0	0	0		ENST00000261489.6_2_13:45008296-45008374:-|nuORF	ENST00000261489.6_2_13:45008296-45008374:-|nuORF	ENST00000261489.6_2_13:45008296-45008374:-|nuORF	MSMS	HCT116MG_D190212_S2	2	357.2356872558594	3	357.236608	1068.688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.96	1	45.859	45.359	46.359	-0.1014								0	0	0	0.8837	1	17493	17493		1.6526	0	1				18517	6852	11481	11538	17782	17782					0.1563992834499004
LERRVVAMPIP	11	Unmodified	_LERRVVAMPIP_					0	0	0			REV__ADGRL3|p.P107Sfs*9|1|0.45|ENSG00000150471|chr4:61676869-61676870|-/T|frameshift_variant	REV__ADGRL3|p.P107Sfs*9|1|0.45|ENSG00000150471|chr4:61676869-61676870|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	640.87939453125	2	640.879007	1279.74346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.249	1	41.945	41.445	42.445	-0.30352								0	0	0	0.95023	1	15733	15733		6.2058	0	1		+		18518	9874	11482	11539	17783	17783					0.11477973750447745
LERTFLTKA	9	Unmodified	_LERTFLTKA_					0	0	0		nc|ENSG00000121270|Q96J66-2|ABCC11;ENSG00000121270|ENST00000356608|ABCC11	nc|ENSG00000121270|Q96J66-2|ABCC11	nc|ENSG00000121270|Q96J66-2|ABCC11	MSMS	HCT116MG_D190212_S4	4	360.1553649902344	3	360.213358	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.993	1	30.629	30.129	31.129	-0.36416								0	0	0	0.76886	1	11230	11230		4.897	0	1				18519	2728	11483	11540	17784	17784					0.0825400488570267
LERTYFTRLLR	11	Unmodified	_LERTYFTRLLR_					0	0	0			REV__ENSG00000067704|ENST00000366922|IARS2	REV__ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	HCT116MG_D190212_S4	4	489.9527282714844	3	489.952537	1466.83578	0.11277	5.5254E-05	0.060384	2.9585E-05	0.17316	8.4839E-05	489.952627901495	47.65	0.53133	47.281	47.143	47.674	-0.36907					43	16	5	0	0	0	0.7378	1	17610	17610		7.846	1.9779	1	75419000	+		18520	10731	11484	11541	17785	17785					0.12103775088303337
LERTYFTRLLR	11	Unmodified	_LERTYFTRLLR_					0	0	0			REV__ENSG00000067704|ENST00000366922|IARS2	REV__ENSG00000067704|ENST00000366922|IARS2	MULTI-SECPEP	HCT116MG_D190212_S4	4	489.2338562011719	3	489.952537	1466.83578	0.11277	5.5254E-05	0.060384	2.9585E-05	0.17316	8.4839E-05	489.952627901495	47.65	0.53133	47.281	47.143	47.674	-0.36907					43	16	5	0	0	0	0.36603	1	17587	17587		1.1098	1.1098	1	75419000	+		18521	10731	11484	11541	17786	17786					0.12103775088303337
LESEDWEEDNW	11	Unmodified	_LESEDWEEDNW_					0	0	0		ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	MSMS	HCT116MG_D190212_S3	3	726.2843627929688	2	726.283511	1450.55247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.95	1	39.649	39.149	40.149	-0.30137								0	0	0	0.95636	1	14816	14816		2.9952	1.5133	1				18522	5671	11485	11542	17787	17787					-0.1547852560845513
LESEREARRLR	11	Unmodified	_LESEREARRLR_					0	0	0		ENST00000442562.1_1_17:18476116-18476272:+|nuORF;ENSG00000233927|ENST00000600659|RPS28	ENST00000442562.1_1_17:18476116-18476272:+|nuORF	ENST00000442562.1_1_17:18476116-18476272:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	472.2674560546875	3	472.267296	1413.78006	0.29829	0.00014087	-0.29904	-0.00014123	-0.00074947	-3.5395E-07	472.26720034976546	16.863	0.26072	16.863	16.733	16.994	0					8	4	3	0	0	0	0.58633	1	5710	5710		36.955	22.117	1	6791400			18523	6515	11486	11543	17788	17788					0.08971941900699676
LESEVVNLL	9	Unmodified	_LESEVVNLL_					0	0	0			REV__TBX19|p.S376Tfs*13|1|0.16|ENSG00000143178|chr1:168312782-168312782|G/-|frameshift_variant	REV__TBX19|p.S376Tfs*13|1|0.16|ENSG00000143178|chr1:168312782-168312782|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1015.5680541992188	1	1015.567	1014.55973	0.8573	0.00087065	0.68749	0.00069819	1.5448	0.0015688	1015.5677008852884	57.885	0.15639	57.611	57.516	57.673	-0.27434					4	2	2	0	0	0	0.057285	1	22024	22024		71.134	3.0529	1	1815100	+		18524	17619	11487	11544	17789	17789					0.053029035205895525
LESHFLNQQVK	11	Unmodified	_LESHFLNQQVK_					0	0	0		ENST00000463135.1_1_X:37300766-37301252:+|nuORF	ENST00000463135.1_1_X:37300766-37301252:+|nuORF	ENST00000463135.1_1_X:37300766-37301252:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	671.8604125976562	2	671.859326	1341.7041	0.75531	0.00050746	-0.18511	-0.00012437	0.5702	0.00038309	671.8593920236339	38.506	0.41515	38.205	37.937	38.352	-0.30137					11	7	2	0	0	0	0.72419	1	14258	14258		12.873	0.63195	1	4902700			18525	8071	11488	11545	17790	17790					0.046915450005371895
LESIRESFFPP	11	Unmodified	_LESIRESFFPP_					0	0	0			REV__ULK4|p.S223R|1|0.4|ENSG00000168038|chr3:41918517-41918517|T/G|missense_variant	REV__ULK4|p.S223R|1|0.4|ENSG00000168038|chr3:41918517-41918517|T/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	661.4701538085938	2	661.342978	1320.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.678	1	39.601	39.101	40.101	-0.077835								0	0	0	0.9387	1	14942	14942		12.241	2.8575	1		+		18526	18041	11489	11546	17791	17791					0.02389337877707476
LESLFRKWHKK	11	Unmodified	_LESLFRKWHKK_					0	0	0			REV__ENSG00000090376|ENST00000261233|IRAK3	REV__ENSG00000090376|ENST00000261233|IRAK3	MSMS	HCT116MG_D190212_S1	1	736.43310546875	2	736.430253	1470.84595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.424	1	49.424	48.924	49.924	0								0	0	0	0.95273	1	18832	18832		4.897	2.3985	1		+		18527	10981	11490	11547	17792	17792					0.12936382813541059
LESLLVLCRQD	11	Unmodified	_LESLLVLCRQD_					0	0	0		INTS7|p.S398R|1|0.29|ENSG00000143493|chr1:211981129-211981129|A/C|missense_variant	INTS7|p.S398R|1|0.29|ENSG00000143493|chr1:211981129-211981129|A/C|missense_variant	INTS7|p.S398R|1|0.29|ENSG00000143493|chr1:211981129-211981129|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	644.8524780273438	2	644.850113	1287.68567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.624	1	41.321	40.821	41.821	-0.30257								0	0	0	0.92235	1	15483	15483		17.113	4.0704	1				18528	9243	11491	11548	17793	17793					0.05333667034346945
LESLRQDWQAY	11	Unmodified	_LESLRQDWQAY_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	HCT116MG_D190212_S2	2	704.8734130859375	2	704.846416	1407.67828	0.87118	0.00061405	-0.11786	-8.3072E-05	0.75332	0.00053097	704.8459211317262	54.314	0.35783	54.125	53.996	54.354	-0.1894					11	6	3	0	0	0	0.73536	1	20987	20987		8.7454	0	1	64127000			18529	3120	11492	11549	17794	17794					-0.00925349241697404
LESQDSTMTP	10	Unmodified	_LESQDSTMTP_					0	0	0		ENST00000506924.1_1_4:170557184-170564073:+|nuORF	ENST00000506924.1_1_4:170557184-170564073:+|nuORF	ENST00000506924.1_1_4:170557184-170564073:+|nuORF	MSMS	HCT116MG_D190212_S2	2	554.2990112304688	2	554.744979	1107.4754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.906	1	23.522	23.022	24.022	-0.38324								0	0	0	0.90475	1	8542	8542		14.838	1.7958	1				18530	8468	11493	11550	17795	17795					-0.07403415358476195
LESQEEETIP	10	Unmodified	_LESQEEETIP_					0	0	0		nc|ENSG00000288591|Q9Y2I9|TBC1D30	nc|ENSG00000288591|Q9Y2I9|TBC1D30	nc|ENSG00000288591|Q9Y2I9|TBC1D30	MULTI-SECPEP	HCT116MG_D190212_S4	4	588.2799072265625	2	587.777333	1173.54011	0.48108	0.00028277	0.88394	0.00051956	1.365	0.00080232	587.7779629961589	34.706	1.0263	34.32	33.776	34.802	-0.38564					29	19	2	0	0	0	0.30738	1	12795	12795		5.7319	0	1	3225700			18531	9674	11494	11551	17796	17796					-0.039715172808200805
LESRLADAP	9	Unmodified	_LESRLADAP_					0	0	0		ENST00000254950.12_1_16:69358575-69358818:+|nuORF	ENST00000254950.12_1_16:69358575-69358818:+|nuORF	ENST00000254950.12_1_16:69358575-69358818:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	486.26153564453125	2	486.261456	970.50836	-0.029038	-1.412E-05	0.23497	0.00011426	0.20593	0.00010014	486.2616995722528	22.119	0.25965	21.892	21.78	22.039	-0.22777					6	4	2	0	0	0	0.33687	1	7715	7715		26.884	2.8631	1	1603600			18532	6814	11495	11552	17797	17797					0.021925795465108422
LESRRVKRPE	10	Unmodified	_LESRRVKRPE_					0	0	0			REV__ENST00000586166.5_2_16:4755229-4784259:-|nuORF	REV__ENST00000586166.5_2_16:4755229-4784259:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	634.7260131835938	2	635.372935	1268.73132	0.55263	0.00035113	-0.18169	-0.00011544	0.37094	0.00023569	635.8740948122647	50.018	0.61855	50.018	49.699	50.317	0					20	11	3	0	0	0	0.31123	1	19159	19159		0.35063	0.35063	1	14174000	+		18533	16656	11496	11553	17798	17798					0.10770073331627827
LESSLSHWKF	10	Unmodified	_LESSLSHWKF_					0	0	0			REV__nc|nan|Q7Z7L8|C11orf96	REV__nc|nan|Q7Z7L8|C11orf96	MSMS	HCT116MG_D190212_S1	1	617.316162109375	2	617.316763	1232.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.779	1	36.779	36.279	37.279	0								0	0	0	0.94107	1	13720	13720		6.7232	0	1		+		18534	17338	11497	11554	17799	17799					0.011967995347504257
LESSRFRYS	9	Unmodified	_LESSRFRYS_					0	0	0		NDST2|p.L191Yfs*12|1|0.56|ENSG00000166507|chr10:73807817-73807817|A/-|frameshift_variant;nc|ENSG00000166507|P52849-2|NDST2;NDST2|p.W384Lfs*23|1|0.38|ENSG00000166507|chr10:73806756-73806757|-/A|frameshift_variant;ENSG00000166507|ENST00000309979|NDST2	NDST2|p.L191Yfs*12|1|0.56|ENSG00000166507|chr10:73807817-73807817|A/-|frameshift_variant	NDST2|p.L191Yfs*12|1|0.56|ENSG00000166507|chr10:73807817-73807817|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	572.699462890625	2	572.790912	1143.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.245	1	30.984	30.484	31.484	-0.26071								0	0	0	0.76718	1	11408	11408		10.824	0.75	1				18535	4861	11498	11555	17800	17800					0.0012305584086789167
LESTLKMKITW	11	Unmodified	_LESTLKMKITW_					0	0	0		ENST00000371045.9_1_1:66827438-66828866:+|nuORF	ENST00000371045.9_1_1:66827438-66828866:+|nuORF	ENST00000371045.9_1_1:66827438-66828866:+|nuORF	MSMS	HCT116MG_D190212_S2	2	675.3797607421875	2	675.378506	1348.74246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.3	1	45.207	44.707	45.707	-0.092472								0	0	0	0.93717	1	17223	17223		13.042	3.6593	1				18536	7437	11499	11556	17801	17801					0.08203714590854361
LESYEITM	8	Unmodified	_LESYEITM_					0	0	0		USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant;USP24|p.F796Lfs*4|1|0.37|ENSG00000162402|chr1:55144178-55144178|A/-|frameshift_variant;USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant;ENSG00000162402|ENST00000294383|USP24	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	493.229248046875	2	493.230976	984.447399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.536	1	38.234	37.734	38.734	-0.30137								0	0	0	0.70483	1	14278	14278		30.225	3.8835	1				18537	4517	11500	11557	17802	17802					-0.045446935479162676
LESYNYNT	8	Unmodified	_LESYNYNT_					0	0	0		tr|U7SNT5|U7SNT5_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01943PE=3SV=1	tr|U7SNT5|U7SNT5_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01943PE=3SV=1	tr|U7SNT5|U7SNT5_FUSNUdTDP-4-dehydrorhamnose3,5-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01943PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	501.75726318359375	2	502.221997	1002.42944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.5	1	33.21	32.71	33.71	-0.29013								0	0	0	0.72655	1	12297	12297		28.487	2.1456	1				18538	18371	11501	11558	17803	17803					-0.07167692478435583
LETALRETQEE	11	Unmodified	_LETALRETQEE_					0	0	0		NUDT2|p.T90Qfs*9|1|0.13|ENSG00000164978|chr9:34343261-34343261|A/-|frameshift_variant;ENSG00000164978|ENST00000379158|NUDT2	NUDT2|p.T90Qfs*9|1|0.13|ENSG00000164978|chr9:34343261-34343261|A/-|frameshift_variant	NUDT2|p.T90Qfs*9|1|0.13|ENSG00000164978|chr9:34343261-34343261|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	659.7266235351562	2	659.827889	1317.64122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.326	1	54.136	53.636	54.636	-0.1894								0	0	0	0.8787	1	20912	20912		22.736	6.5872	1				18539	4742	11502	11559	17804	17804					-0.004890655781309761
LETDTFKL	8	Unmodified	_LETDTFKL_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;nc|ENSG00000196655|Q9Y296-2|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S3	3	483.76092529296875	2	483.760758	965.506963	0.22131	0.00010706	0.50882	0.00024615	0.73014	0.00035321	483.760920622735	48.221	0.26077	47.905	47.775	48.036	-0.31596					6	4	2	0	0	0	0.6854	1	18163	18163		24.674	0	1	3217100			18540	6093	11503	11560	17805	17805					0.022829454577845354
LETGGKHK	8	Unmodified	_LETGGKHK_					0	0	0			REV__ENST00000321023.5_1_12:6204574-6232125:-|nuORF	REV__ENST00000321023.5_1_12:6204574-6232125:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	869.2669677734375	1	869.483942	868.476666	0.702	0.00061038	0.054154	4.7086E-05	0.75615	0.00065746	869.4839298126464	39.683	0.35719	39.605	39.428	39.785	-0.077835					9	6	2	0	0	0	0.74206	1	14896	14896		18.135	1.1927	1	21119000	+		18541	14884	11504	11561	17806	17806					0.037166315832337204
LETIKIRMT	9	Oxidation (M)	_LETIKIRM(Oxidation (M))T_		LETIKIRM(1)T		LETIKIRM(54)T	0	0	1			REV__BMI1|p.T5M|1|0.39|ENSG00000168283|chr10:22326463-22326463|C/T|missense_variant	REV__BMI1|p.T5M|1|0.39|ENSG00000168283|chr10:22326463-22326463|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	560.7747802734375	2	560.823366	1119.63218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.626	1	44.626	44.126	45.126	0								0	0	0	0.1107	1	16887	16887		53.833	23.196	1		+		18542	10043	11505	11562	17807	17807		148			0.07714914322491495
LETLNLVSL	9	Unmodified	_LETLNLVSL_					0	0	0			REV__HHLA1|p.A77V|1|0.22|ENSG00000132297|chr8:132098932-132098932|G/A|missense_variant	REV__HHLA1|p.A77V|1|0.22|ENSG00000132297|chr8:132098932-132098932|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	502.25048828125	2	501.297507	1000.58046	0.35176	0.00017634	-3.6302	-0.0018198	-3.2785	-0.0016435	501.2974017240634	38.357	0.20697	38.264	38.167	38.374	-0.09301					7	3	3	0	0	0	0.49914	1	14373	14373		16.942	2.104	1	5790800	+		18543	16885	11506	11563	17808	17808					0.08019493900224006
LETSLVKGI	9	Unmodified	_LETSLVKGI_					0	0	0		ENSG00000184014|ENST00000328194|DENND5A	ENSG00000184014|ENST00000328194|DENND5A	ENSG00000184014|ENST00000328194|DENND5A	MULTI-MSMS	HCT116MG_D190212_S3	3	480.292236328125	2	480.292225	958.569897	0.22972	0.00011033	-0.2975	-0.00014289	-0.067781	-3.2554E-05	480.2919636622513	39.309	0.21476	39.008	38.872	39.087	-0.30137					5	3	2	0	0	0	0.35128	1	14617	14617		25.399	1.6095	1	5423100			18544	5754	11507	11564	17809	17809					0.08895511245816579
LETSTHKKRA	10	Unmodified	_LETSTHKKRA_					0	0	0			REV__ENST00000514785.1_1_4:103651695-103651851:-|nuORF	REV__ENST00000514785.1_1_4:103651695-103651851:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	391.2958679199219	3	390.891166	1169.65167	-0.030482	-1.1915E-05	-0.15482	-6.0519E-05	-0.18531	-7.2434E-05	390.8910740077246	10.717	0.33109	10.444	10.296	10.627	-0.27365					19	12	2	0	0	0	0.88823	1	3434	3434		0.62683	0	1	655170	+		18545	16203	11508	11565	17810	17810					0.07363006657601545
LETVKRKSE	9	Unmodified	_LETVKRKSE_					0	0	0		nc|ENSG00000145241|Q03188-2|CENPC;CENPC|p.T575Lfs*21|1|0.35|ENSG00000145241|chr4:67508995-67508995|T/-|frameshift_variant;ENST00000510189.5_1_4:68359569-68411187:-|nuORF;ENSG00000145241|ENST00000273853|CENPC	nc|ENSG00000145241|Q03188-2|CENPC	nc|ENSG00000145241|Q03188-2|CENPC	MULTI-MSMS	HCT116MG_D190212_S3	3	545.3165283203125	2	545.316763	1088.61897	0.57767	0.00031501	0.039764	2.1684E-05	0.61743	0.00033669	545.3166295803588	49.095	1.4614	48.779	47.932	49.393	-0.31596					49	27	3	0	0	0	0.71345	1	18252	18252		4.3292	0	1	5915300			18546	401	11509	11566	17811	17811					0.07820799534783873
LETVKRKSE	9	Unmodified	_LETVKRKSE_					0	0	0		nc|ENSG00000145241|Q03188-2|CENPC;CENPC|p.T575Lfs*21|1|0.35|ENSG00000145241|chr4:67508995-67508995|T/-|frameshift_variant;ENST00000510189.5_1_4:68359569-68411187:-|nuORF;ENSG00000145241|ENST00000273853|CENPC	nc|ENSG00000145241|Q03188-2|CENPC	nc|ENSG00000145241|Q03188-2|CENPC	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	545.316763	1088.61897	0.57767	0.00031501	0.039764	2.1684E-05	0.61743	0.00033669	545.3166295803588	49.095	1.4614	48.779	47.932	49.393	-0.31596	0.15527	-0.0001564	NaN	4.3292	49	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5915300			18547	401	11509	11566							0.07820799534783873
LETVLGEP	8	Unmodified	_LETVLGEP_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MSMS	HCT116MG_D190212_S2	2	429.19287109375	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.427	1	24.047	23.547	24.547	-0.38003								0	0	0	0.8837	1	8753	8753		14.582	0	1				18548	2629	11510	11567	17812	17812					0.02022987394957454
LETVSIRRQGY	11	Unmodified	_LETVSIRRQGY_					0	0	0		MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;MYO3B|p.G1143Efs*93|1|0.19|ENSG00000071909|chr2:170514975-170514975|G/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-3|MYO3B;MYO3B|p.K1243Sfs*25|1|0.21|ENSG00000071909|chr2:170543980-170543980|A/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B	MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant	MYO3B|p.S1144Kfs*12|1|0.37|ENSG00000071909|chr2:170514974-170514975|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	661.366943359375	2	661.364776	1320.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.745	1	30.478	29.978	30.978	-0.26704								0	0	0	0.82946	1	11316	11316		29.082	1.4528	1				18549	1259	11511	11568	17813	17813					0.06746947374858792
LEVDLKNGY	9	Unmodified	_LEVDLKNGY_					0	0	0		SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant;SRSF6|p.A312Gfs*18|1|0.11|ENSG00000124193|chr20:43460957-43460958|-/A|frameshift_variant;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;nc|ENSG00000124193|Q13247-2|SRSF6;ENSG00000116350|ENST00000373795|SRSF4	SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant;ENSG00000116350|ENST00000373795|SRSF4	SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	525.8191528320312	2	525.776939	1049.53933	0.35056	0.00018432	0.10439	5.4884E-05	0.45495	0.0002392	525.7768362223127	38.419	0.2097	38.326	38.219	38.428	-0.09301					5	3	2	0	0	0	0.02949	1	14450	14450		88.954	43.254	1	7612400			18550	2832;2514	11512	11569	17814	17814					0.016537328607682866
LEVFLILLMI	10	Unmodified	_LEVFLILLMI_					0	0	0		tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1	tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1	tr|U7SVU6|U7SVU6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01344PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	602.3751831054688	2	602.374704	1202.73485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.509	1	58.338	57.838	58.838	-0.1703								0	0	0	0.96377	1	22614	22614		1.6526	0	1				18551	18497	11513	11570	17815	17815					0.14159607061264978
LEVIIPERY	9	Unmodified	_LEVIIPERY_					0	0	0		UBE2T|p.P62Nfs*48|1|0.11|ENSG00000077152|chr1:202333551-202333552|-/TT|frameshift_variant;ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	UBE2T|p.P62Nfs*48|1|0.11|ENSG00000077152|chr1:202333551-202333552|-/TT|frameshift_variant	UBE2T|p.P62Nfs*48|1|0.11|ENSG00000077152|chr1:202333551-202333552|-/TT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	566.3245849609375	2	566.324057	1130.63356	0.68672	0.00038891	0.19943	0.00011294	0.88615	0.00050185	566.3240906421003	47.121	0.30975	47	46.82	47.13	-0.12175					10	5	2	0	0	0	0.0201	1	17974	17974		96.367	31.132	1	39560000			18552	1350	11514	11571	17816	17816					0.07346871682921119
LEVRKELVA	9	Unmodified	_LEVRKELVA_					0	0	0			REV__nc|ENSG00000160191|O76083-9|PDE9A	REV__nc|ENSG00000160191|O76083-9|PDE9A	MULTI-MSMS	HCT116MG_D190212_S2	2	352.8851623535156	3	352.885241	1055.63389	-0.096615	-3.4094E-05	-0.5237	-0.00018481	-0.62032	-0.0002189	352.8849432703087	43.932	0.20581	43.854	43.71	43.916	-0.078373					5	3	2	0	0	0	0.1935	1	16695	16695		41.956	1.2306	1	16999000	+		18553	12820	11515	11572	17817	17817					0.10830291402771763
LEVTLELP	8	Unmodified	_LEVTLELP_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MSMS	HCT116MG_D190212_S3	3	457.2657165527344	2	457.265676	912.516799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.302	1	33.012	32.512	33.512	-0.29013								0	0	0	0.8217	1	12217	12217		20.871	0	1		+		18554	10949	11516	11573	17818	17818					0.057041334631549034
LEVTLELP	8	Unmodified	_LEVTLELP_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MSMS	HCT116MG_D190212_S4	4	457.26611328125	2	457.265676	912.516799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.36	1	32.978	32.478	33.478	-0.38223								0	0	0	0.73047	1	12143	12143		28.173	7.302	1		+		18555	10949	11516	11573	17819	17819					0.057041334631549034
LEWCSFETV	9	Unmodified	_LEWCSFETV_					0	0	0			REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	MSMS	HCT116MG_D190212_S1	1	557.2516479492188	2	557.2497	1112.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.208	1	22.208	21.708	22.708	0								0	0	0	0.64498	1	7851	7851		21.747	2.4897	1		+		18556	16473	11517	11574	17820	17820					-0.0668960228231299
LEWIQWRERQW	11	Unmodified	_LEWIQWRERQW_					0	0	0			REV__ENST00000489330.6_1_X:11156985-11160533:-|nuORF	REV__ENST00000489330.6_1_X:11156985-11160533:-|nuORF	MSMS	HCT116MG_D190212_S4	4	543.947509765625	3	543.947675	1628.82119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.627	1	50.272	49.772	50.772	-0.35483								0	0	0	0.96121	1	18816	18816		0.45452	0.35968	1		+		18557	10604	11518	11575	17821	17821					0.03193702940143339
LEWIRRTIP	9	Unmodified	_LEWIRRTIP_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-2|ACTN1	ENSG00000130402|ENST00000252699|ACTN4	MSMS	HCT116MG_D190212_S3	3	592.353759765625	2	592.35094	1182.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.103	1	39.802	39.302	40.302	-0.30137								0	0	0	0.76967	1	14877	14877		2.0598	0.21551	1				18558	3079;1262	11519	11576	17822	17822					0.10329088905268691
LEWRYYEQLEW	11	Unmodified	_LEWRYYEQLEW_					0	0	0		tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	538.3043212890625	3	538.924424	1613.75144	0.58583	0.00031572	1.4311	0.00077125	2.0169	0.001087	538.9248128545007	26.079	0.67788	26.079	25.875	26.553	0					15	12	2	0	0	0	0.36618	1	9415	9415		0.08335	0.08335	1	21943000			18559	18478	11520	11577	17823	17823					-0.03088220519089191
LEWRYYEQLEW	11	Unmodified	_LEWRYYEQLEW_					0	0	0		tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	tr|U7SUF3|U7SUF3_FUSNU1,4-alpha-glucanbranchingenzymeGlgBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgBPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	807.8790283203125	2	807.882998	1613.75144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.459	1	52.153	51.653	52.653	-0.30639								0	0	0	0.95954	1	19832	19832		1.3295	0.9789	1				18560	18478	11520	11577	17824	17824					-0.03088220519089191
LEWTDGPPP	9	Unmodified	_LEWTDGPPP_					0	0	0			REV__nc|ENSG00000167972|Q99758-2|ABCA3	REV__nc|ENSG00000167972|Q99758-2|ABCA3	MSMS	HCT116MG_D190212_S4	4	506.2228698730469	2	506.242732	1010.47091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.65	1	22.412	21.912	22.912	-0.23758								0	0	0	0.58443	1	7891	7891		24.674	1.5255	1		+		18561	9818	11521	11578	17825	17825					-0.033905117191011414
LEYIHEHEY	9	Unmodified	_LEYIHEHEY_					0	0	0		ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	MULTI-MSMS	HCT116MG_D190212_S2	2	616.7831420898438	2	616.782753	1231.55095	0.16449	0.00010145	0.85109	0.00052494	1.0156	0.00062639	616.7830996114612	30.543	0.20488	30.259	30.182	30.387	-0.28453					5	3	2	0	0	0	0.0057285	1	11260	11260		131.27	100.63	1	28471000			18562	1730	11522	11579	17826	17826					-0.05556070115903822
LEYIHEHEY	9	Unmodified	_LEYIHEHEY_					0	0	0		ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	MSMS	HCT116MG_D190212_S3	3	616.78271484375	2	616.782753	1231.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.754	1	30.494	29.994	30.994	-0.26071								0	0	0	0.027064	1	11210	11210		85.272	52.486	1				18563	1730	11522	11579	17827	17827					-0.05556070115903822
LEYKEKEKRIK	11	Unmodified	_LEYKEKEKRIK_					0	0	0			REV__ENST00000285021.11_1_3:14186762-14186933:-|nuORF	REV__ENST00000285021.11_1_3:14186762-14186933:-|nuORF	MSMS	HCT116MG_D190212_S4	4	732.4320678710938	2	732.432658	1462.85076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.378	1	49.016	48.516	49.516	-0.36213								0	0	0	0.94709	1	18313	18313		13.615	2.8154	1		+		18564	14729	11523	11580	17828	17828					0.13785222165643063
LEYLAIKR	8	Unmodified	_LEYLAIKR_					0	0	0			REV__nc|ENSG00000163539|O75122|CLASP2	REV__nc|ENSG00000163539|O75122|CLASP2	MSMS	HCT116MG_D190212_S3	3	503.3059387207031	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.698	1	54.403	53.903	54.903	-0.29587								0	0	0	0.8837	1	20732	20732		2.5775	0	1		+		18565	10199	11524	11581	17829	17829					0.09974923719596518
LEYPILIAQ	9	Unmodified	_LEYPILIAQ_					0	0	0		ENST00000496444.1_1_2:11300571-11300830:+|nuORF;nc|ENSG00000162976|Q8N755-2|SLC66A3;ENSG00000162976|ENST00000295083|SLC66A3	ENST00000496444.1_1_2:11300571-11300830:+|nuORF	ENST00000496444.1_1_2:11300571-11300830:+|nuORF	MSMS	HCT116MG_D190212_S1	1	530.305908203125	2	530.307875	1058.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.125	1	16.125	15.625	16.625	0								0	0	0	0.768	1	5406	5406		7.9102	0.62092	1				18566	4571	11525	11582	17830	17830					0.07424084279887211
LFAGEALPAP	10	Unmodified	_LFAGEALPAP_					0	0	0			REV__ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant	REV__ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	985.5349731445312	1	985.535309	984.528032	0.80078	0.0007892	-0.59532	-0.00058671	0.20546	0.00020249	985.5351655635512	54.733	0.40921	54.544	54.303	54.713	-0.18911					17	7	3	0	0	0	0.48798	1	21047	21047		36.044	0	1	19549000	+		18567	12387	11526	11583	17831	17831					0.03514955557261601
LFALKKKLIP	10	Unmodified	_LFALKKKLIP_					0	0	0			REV__ENST00000486468.1_1_2:180027226-180056568:-|nuORF	REV__ENST00000486468.1_1_2:180027226-180056568:-|nuORF	MSMS	HCT116MG_D190212_S3	3	585.9031982421875	2	585.902277	1169.79	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.623	1	38.322	37.822	38.822	-0.30137								0	0	0	0.96291	1	14314	14314		1.8442	0	1		+		18568	13917	11527	11584	17832	17832					0.21189781644034156
LFALRSRFPF	10	Unmodified	_LFALRSRFPF_					0	0	0		ENST00000259008.6_1_17:59938921-59940758:-|nuORF	ENST00000259008.6_1_17:59938921-59940758:-|nuORF	ENST00000259008.6_1_17:59938921-59940758:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	627.7633666992188	2	627.361308	1252.70806	0.22222	0.00013941	2.5749	0.0016154	2.7971	0.0017548	627.362484210987	47.909	0.31235	47.593	47.411	47.723	-0.31596					8	5	2	0	0	0	0.64004	1	18001	18001		25.399	1.3787	1	9630200			18569	6835	11528	11585	17833	17833					0.09181679284938582
LFDEKFILQ	9	Unmodified	_LFDEKFILQ_					0	0	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	HCT116MG_D190212_S2	2	577.3326416015625	2	576.818607	1151.62266	0.47007	0.00027114	0.26946	0.00015543	0.73953	0.00042657	576.8186474016883	45.167	0.52088	45.075	44.787	45.307	-0.092472					20	9	3	0	0	0	0.65277	1	17075	17075		7.9102	0.62092	1	121330000	+		18570	14153	11529	11586	17834	17834					0.05291469308622254
LFDMVTTW	8	Unmodified	_LFDMVTTW_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MSMS	HCT116MG_D190212_S1	1	506.7427978515625	2	506.744053	1011.47355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.19	1	51.19	50.69	51.69	0								0	0	0	0.8837	1	19551	19551		13.508	2.684	1				18571	2714	11530	11587	17835	17835					-0.031723795857942605
LFDPSLTLEDH	11	Unmodified	_LFDPSLTLEDH_					0	0	0		ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	MSMS	HCT116MG_D190212_S3	3	643.81689453125	2	643.816793	1285.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.595	1	37.293	36.793	37.793	-0.30137								0	0	0	0.67149	1	13931	13931		39.95	13.066	1				18572	3634	11531	11588	17836	17836					-0.012352452559071025
LFFPSPTTSF	10	Unmodified	_LFFPSPTTSF_					0	0	0			REV__ENST00000511024.5_1_5:137676955-137677195:+|nuORF	REV__ENST00000511024.5_1_5:137676955-137677195:+|nuORF	MSMS	HCT116MG_D190212_S3	3	572.3439331054688	2	572.289682	1142.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.814	1	49.498	48.998	49.998	-0.31525								0	0	0	0.90023	1	18768	18768		15.847	3.3156	1		+		18573	16181	11532	11589	17837	17837					-0.0007679261682369543
LFFPYFWWVSY	11	Unmodified	_LFFPYFWWVSY_					0	0	0			REV__ENST00000262646.11_1_8:61534433-61534553:+|nuORF	REV__ENST00000262646.11_1_8:61534433-61534553:+|nuORF	MSMS	HCT116MG_D190212_S2	2	518.8478393554688	3	518.920063	1553.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.059	1	48.905	48.405	49.405	-0.15405								0	0	0	0.95925	1	18764	18764		0.50596	0	1		+		18574	14642	11533	11590	17838	17838					-0.016360068405447237
LFFQWLRK	8	Unmodified	_LFFQWLRK_					0	0	0			REV__ENST00000517666.5_1_8:124338137-124338200:-|nuORF	REV__ENST00000517666.5_1_8:124338137-124338200:-|nuORF	MSMS	HCT116MG_D190212_S1	1	569.3340454101562	2	569.332019	1136.64948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.359	1	50.359	49.859	50.859	0								0	0	0	0.8837	1	19213	19213		5.7604	0.46354	1		+		18575	16217	11534	11591	17839	17839					0.08662622710471624
LFFRVEERKKW	11	Unmodified	_LFFRVEERKKW_					0	0	0		ENST00000527738.1_1_11:118918433-118918792:-|nuORF;ENSG00000149428|ENST00000617285|HYOU1	ENST00000527738.1_1_11:118918433-118918792:-|nuORF	ENST00000527738.1_1_11:118918433-118918792:-|nuORF	MSMS	HCT116MG_D190212_S4	4	769.4371948242188	2	769.435535	1536.85652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.515	1	48.147	47.647	48.647	-0.36728								0	0	0	0.95925	1	17971	17971		1.4819	1.1313	1				18576	4061	11535	11592	17840	17840					0.10956365467950491
LFFSDYSGNAP	11	Unmodified	_LFFSDYSGNAP_					0	0	0			REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	MSMS	HCT116MG_D190212_S4	4	608.8590698242188	2	609.277303	1216.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.24	1	27.908	27.408	28.408	-0.33138								0	0	0	0.94538	1	10146	10146		8.7454	2.0222	1		+		18577	17214	11536	11593	17841	17841					-0.059554724901772715
LFFWLVLRRLV	11	Unmodified	_LFFWLVLRRLV_					0	0	0		ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	MULTI-MSMS	HCT116MG_D190212_S1	1	488.3088073730469	3	487.974614	1460.90201	0.28146	0.00013735	0.40699	0.0001986	0.68845	0.00033595	487.97479733320006	56.507	0.51601	56.507	56.273	56.789	0					32	9	5	0	0	0	0.74191	1	21709	21709		0.094841	0.011491	1	89203000			18578	1324	11537	11594	17842	17842					0.1899963572100205
LFFWLVLRRLV	11	Unmodified	_LFFWLVLRRLV_					0	0	0		ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	MULTI-MSMS	HCT116MG_D190212_S1	1	731.4578247070312	2	731.458282	1460.90201	0.77664	0.00056808	0.42572	0.0003114	1.2024	0.00087948	731.4584095713591	56.516	1.0865	56.516	56.273	57.36	0					41	20	4	0	0	0	0.74191	1	21825	21825		0.35063	0.081612	1	44540000			18579	1324	11537	11594	17843	17843					0.1899963572100205
LFFWLVLRRLV	11	Unmodified	_LFFWLVLRRLV_					0	0	0		ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	487.974614	1460.90201	0.31503	0.00015373	0.37171	0.00018139	0.68674	0.00033511	487.97473368527636	56.654	0.6321	56.472	56.156	56.788	-0.18261	-0.0056828	-5.0702E-05	NaN	0.094841	36	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129290000			18580	1324	11537	11594							0.1899963572100205
LFFWLVLRRLV	11	Unmodified	_LFFWLVLRRLV_					0	0	0		ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	MULTI-MATCH	HCT116MG_D190212_S3	3		3	487.974614	1460.90201	0.28926	0.00014115	0.40158	0.00019596	0.69085	0.00033711	487.9749817249019	56.721	0.20882	56.438	56.359	56.568	-0.28367	-0.039711	-6.9772E-06	NaN	0.094841	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	968970			18581	1324	11537	11594							0.1899963572100205
LFFWLVLRRLV	11	Unmodified	_LFFWLVLRRLV_					0	0	0		ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	ENSG00000075790|ENST00000005259|BCAP29	MULTI-MATCH	HCT116MG_D190212_S4	4		2	731.458282	1460.90201	0.99453	0.00072746	1.2173	0.00089041	2.2118	0.0016179	731.9608049970138	56.774	0.15644	56.474	56.363	56.519	-0.30039	-0.008227	0.0011215	NaN	0.35063	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	593240			18582	1324	11537	11594							0.1899963572100205
LFGEGFGNCKI	11	Unmodified	_LFGEGFGNCKI_					0	0	0		DNAH2|p.I2363Yfs*40|1|0.31|ENSG00000183914|chr17:7792278-7792278|C/-|frameshift_variant;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.Q4263Sfs*13|1|0.12|ENSG00000183914|chr17:7832639-7832639|C/-|frameshift_variant;DNAH2|p.K4326Rfs*84|3|0.27|ENSG00000183914|chr17:7832920-7832920|C/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	DNAH2|p.I2363Yfs*40|1|0.31|ENSG00000183914|chr17:7792278-7792278|C/-|frameshift_variant	DNAH2|p.I2363Yfs*40|1|0.31|ENSG00000183914|chr17:7792278-7792278|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	592.7922973632812	2	592.792066	1183.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.573	1	39.496	38.996	39.996	-0.077835								0	0	0	0.93552	1	14899	14899		13.906	0.86358	1				18583	704	11538	11595	17844	17844					-0.014862317457073004
LFGELSLVS	9	Unmodified	_LFGELSLVS_					0	0	0		ENSG00000106605|ENST00000265523|BLVRA	ENSG00000106605|ENST00000265523|BLVRA	ENSG00000106605|ENST00000265523|BLVRA	MULTI-MSMS	HCT116MG_D190212_S2	2	964.5357666015625	1	964.534975	963.527698	0.7248	0.0006991	-0.15786	-0.00015226	0.56694	0.00054684	964.5346261095194	56.416	0.25953	56.233	56.052	56.312	-0.18261					6	4	2	0	0	0	0.24973	1	21791	21791		36.044	0	1	34598000			18584	2087	11539	11596	17845	17845					0.044475358374370444
LFGGAPGP	8	Unmodified	_LFGGAPGP_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF	REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF	MSMS	HCT116MG_D190212_S2	2	358.19219970703125	2	358.192314	714.370075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.718	1	34.559	34.059	35.059	-0.15834								0	0	0	0.8837	1	12926	12926		11.114	4.7604	1				18585	6384	11540	11597	17846	17846					0.0014650108871592238
LFGGKKKKEF	10	Unmodified	_LFGGKKKKEF_					0	0	0		tr|U7SUV0|U7SUV0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01017PE=4SV=1	tr|U7SUV0|U7SUV0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01017PE=4SV=1	tr|U7SUV0|U7SUV0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01017PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	591.3582763671875	2	591.355691	1180.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.099	1	53.099	52.599	53.599	0								0	0	0	0.95351	1	20327	20327		3.9444	0.3479	1				18586	18480	11541	11598	17847	17847					0.11370857190763672
LFGLCGKA	8	Unmodified	_LFGLCGKA_					0	0	0			REV__sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	REV__sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	MSMS	HCT116MG_D190212_S2	2	404.7231750488281	2	404.722924	807.431295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.21	1	45.118	44.618	45.618	-0.092472								0	0	0	0.8837	1	17187	17187		9.3474	0	1		+		18587	17557	11542	11599	17848	17848					0.019876897964991258
LFGRDLSY	8	Unmodified	_LFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	HCT116MG_D190212_S2	2	485.7533874511719	2	485.753267	969.491981	0.40046	0.00019452	-0.076959	-3.7383E-05	0.3235	0.00015714	485.75316595629425	43.557	0.51546	43.484	43.303	43.818	-0.073376					30	9	4	0	0	0	0.095352	1	16504	16504		96.111	24.189	1	579780000			18588	5093	11543	11600	17849	17849					0.0060149838041070325
LFGRDLSY	8	Unmodified	_LFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	HCT116MG_D190212_S2	2	970.4993286132812	1	970.499258	969.491981	0.87692	0.00085105	-1.1883	-0.0011533	-0.31139	-0.0003022	970.4988979574882	43.584	0.46378	43.511	43.303	43.767	-0.073372					22	8	4	0	0	0	0.043218	1	16529	16529		131.27	63.924	1	62032000			18589	5093	11543	11600	17850	17850					0.0060149838041070325
LFGRDLSY	8	Unmodified	_LFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MSMS	HCT116MG_D190212_S3	3	485.75335693359375	2	485.753267	969.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.878	1	43.572	43.072	44.072	-0.30616								0	0	0	0.52323	1	16386	16386		41.84	7.6523	1				18590	5093	11543	11600	17851	17851					0.0060149838041070325
LFGYDRWDGE	10	Unmodified	_LFGYDRWDGE_					0	0	0			REV__ENST00000393301.4_1_11:88059607-88070840:-|nuORF	REV__ENST00000393301.4_1_11:88059607-88070840:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	629.28125	2	629.280377	1256.5462	-0.24244	-0.00015256	0.30633	0.00019277	0.06389	4.0205E-05	629.2806564999045	16.53	0.63683	16.364	15.919	16.556	-0.16664					33	12	3	0	0	0	0.87801	1	5301	5301		3.9444	0.66309	1	5046200	+		18591	15324	11544	11601	17852	17852					-0.07180954258660677
LFIVSFVFF	9	Unmodified	_LFIVSFVFF_					0	0	0			REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	MSMS	HCT116MG_D190212_S1	1	559.81591796875	2	559.817879	1117.6212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.087	1	57.087	56.587	57.587	0								0	0	0	0.76669	1	21960	21960		12.532	2.4576	1		+		18592	10008	11545	11602	17853	17853					0.06709880010521374
LFKCKVLP	8	Unmodified	_LFKCKVLP_					0	0	0			REV__ENST00000373358.7_2_X:75397480-75397852:+|nuORF	REV__ENST00000373358.7_2_X:75397480-75397852:+|nuORF	MSMS	HCT116MG_D190212_S4	4	474.2908935546875	2	474.290974	946.567395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.787	1	40.409	39.909	40.909	-0.37828								0	0	0	0.8837	1	14976	14976		2.8892	0	1		+		18593	15187	11546	11603	17854	17854					0.09197384307140055
LFKILKLKL	9	Unmodified	_LFKILKLKL_					0	0	0			REV__nc|ENSG00000135931|Q7Z3E5-2|ARMC9	REV__nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MSMS	HCT116MG_D190212_S4	4	558.3975219726562	2	558.39937	1114.78419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.173	1	49.815	49.315	50.315	-0.35878								0	0	0	0.7701	1	18633	18633		0.52476	0	1		+		18594	12112	11547	11604	17855	17855					0.23138683132356164
LFKKKKKK	8	Unmodified	_LFKKKKKK_					0	0	0		ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MSMS	HCT116MG_D190212_S3	3	524.3714599609375	2	524.373687	1046.73282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.3824	1	0.44331	-0.05669	0.94331	0.060905								0	0	0	0.8837	1	130	130		0	0	1				18595	8600	11548	11605	17856	17856					0.21132359158309555
LFKKKKKK	8	Unmodified	_LFKKKKKK_					0	0	0		ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MSMS	HCT116MG_D190212_S4	4	524.3714599609375	2	524.373687	1046.73282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6842	1	2.4196	1.9196	2.9196	-0.26456								0	0	0	0.8837	1	819	819		0	0	1				18596	8600	11548	11605	17857	17857					0.21132359158309555
LFKKKKKK	8	Unmodified	_LFKKKKKK_					0	0	0		ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MSMS	HCT116MG_D190212_S4	4	524.3714599609375	2	524.373687	1046.73282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.757	1	55.445	54.945	55.945	-0.312								0	0	0	0.8837	1	20886	20886		0	0	1				18597	8600	11548	11605	17858	17858					0.21132359158309555
LFKKMLHELL	10	Unmodified	_LFKKMLHELL_					0	0	0			REV__BUB1|p.E55K|1|0.19|ENSG00000169679|chr2:110674148-110674148|C/T|missense_variant	REV__BUB1|p.E55K|1|0.19|ENSG00000169679|chr2:110674148-110674148|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	636.3800048828125	2	636.380852	1270.74715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.556	1	45.556	45.056	46.056	0								0	0	0	0.94107	1	17263	17263		6.7232	0.99131	1		+		18598	10066	11549	11606	17859	17859					0.12260643524314219
LFKLALPCL	9	Unmodified	_LFKLALPCL_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	HCT116MG_D190212_S2	2	509.3132629394531	2	509.311906	1016.60926	0.34982	0.00017817	-0.16642	-8.4761E-05	0.1834	9.3406E-05	509.31173370426234	51.021	1.705	50.842	50.238	51.943	-0.17868					96	32	4	0	0	0	0.64512	1	19940	19940		8.5933	0.68312	1	673240000			18599	6246	11550	11607	17860	17860					0.10161939995657576
LFKLALPCL	9	Unmodified	_LFKLALPCL_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	509.311906	1016.60926	0.161	8.1998E-05	0.047565	2.4225E-05	0.20856	0.00010622	509.31183679135273	51.422	1.8164	51.072	50.475	52.291	-0.35028	0.067295	5.9429E-05	NaN	8.5933	93	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186800000			18600	6246	11550	11607							0.10161939995657576
LFKMLVKV	8	Unmodified	_LFKMLVKV_					0	0	0			REV__AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	REV__AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	489.3145446777344	2	489.314449	976.614345	0.1163	5.6907E-05	0.095743	4.6848E-05	0.21204	0.00010376	489.3144219611941	51.833	2.2727	51.524	51.07	53.342	-0.30927					112	43	4	0	0	0	0.86388	1	20296	20296		2.8892	2.8892	1	355590000	+		18601	9956	11551	11608	17861	17861					0.1251024385828714
LFKQKLKP	8	Unmodified	_LFKQKLKP_					0	0	0		ENST00000262995.8_1_4:144392015-144392123:+|nuORF	ENST00000262995.8_1_4:144392015-144392123:+|nuORF	ENST00000262995.8_1_4:144392015-144392123:+|nuORF	MSMS	HCT116MG_D190212_S1	1	501.3267517089844	2	501.328945	1000.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.259	1	48.259	47.759	48.759	0								0	0	0	0.8837	1	18358	18358		2.8892	0	1				18602	6872	11552	11609	17862	17862					0.14304104478924273
LFKRRREDP	9	Unmodified	_LFKRRREDP_					0	0	0			REV__CREB5|p.R384W|1|0.09|ENSG00000146592|chr7:28809310-28809310|C/T|missense_variant	REV__CREB5|p.R384W|1|0.09|ENSG00000146592|chr7:28809310-28809310|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	608.3850708007812	2	608.849096	1215.68364	0.59335	0.00036126	-1.1911	-0.0007252	-0.59775	-0.00036394	608.8480606123297	53.281	0.20581	53.281	53.153	53.359	0					5	3	2	0	0	0	0.26676	1	20418	20418		0.52476	0	1	8275700	+		18603	10292	11553	11610	17863	17863					0.0844241913141559
LFLFPIMCI	9	Unmodified	_LFLFPIMCI_					0	0	0		ENST00000527334.5_1_8:38250086-38250143:+|nuORF	ENST00000527334.5_1_8:38250086-38250143:+|nuORF	ENST00000527334.5_1_8:38250086-38250143:+|nuORF	MSMS	HCT116MG_D190212_S1	1	366.2020568847656	3	366.202637	1095.58608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.752	1	40.752	40.252	41.252	0								0	0	0	0.76759	1	15326	15326		9.3831	3.1913	1				18604	8595	11554	11611	17864	17864					0.04211177886713813
LFLFPIMCI	9	Unmodified	_LFLFPIMCI_					0	0	0		ENST00000527334.5_1_8:38250086-38250143:+|nuORF	ENST00000527334.5_1_8:38250086-38250143:+|nuORF	ENST00000527334.5_1_8:38250086-38250143:+|nuORF	MSMS	HCT116MG_D190212_S3	3	366.2021484375	3	366.202637	1095.58608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.974	1	33.68	33.18	34.18	-0.29419								0	0	0	0.76862	1	12489	12489		5.7319	0.83484	1				18605	8595	11554	11611	17865	17865					0.04211177886713813
LFLFPIMCI	9	Unmodified	_LFLFPIMCI_					0	0	0		ENST00000527334.5_1_8:38250086-38250143:+|nuORF	ENST00000527334.5_1_8:38250086-38250143:+|nuORF	ENST00000527334.5_1_8:38250086-38250143:+|nuORF	MSMS	HCT116MG_D190212_S3	3	366.20245361328125	3	366.202637	1095.58608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.918	1	43.612	43.112	44.112	-0.30616								0	0	0	0.76759	1	16402	16402		9.3831	3.6513	1				18606	8595	11554	11611	17866	17866					0.04211177886713813
LFLFPIMCI	9	Unmodified	_LFLFPIMCI_					0	0	0		ENST00000527334.5_1_8:38250086-38250143:+|nuORF	ENST00000527334.5_1_8:38250086-38250143:+|nuORF	ENST00000527334.5_1_8:38250086-38250143:+|nuORF	MSMS	HCT116MG_D190212_S4	4	366.2022705078125	3	366.202637	1095.58608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.098	1	43.725	43.225	44.225	-0.37373								0	0	0	0.76862	1	16234	16234		5.7319	0.43497	1				18607	8595	11554	11611	17867	17867					0.04211177886713813
LFLGPMAL	8	Unmodified	_LFLGPMAL_					0	0	0		ENSG00000179600|ENST00000621500|GPHB5	ENSG00000179600|ENST00000621500|GPHB5	ENSG00000179600|ENST00000621500|GPHB5	MSMS	HCT116MG_D190212_S4	4	431.2500305175781	2	431.248775	860.482997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.93	1	31.555	31.055	32.055	-0.37529								0	0	0	0.8837	1	11609	11609		6.3541	0	1				18608	5563	11555	11612	17868	17868					0.04717433490407075
LFLHFQLLVLI	11	Unmodified	_LFLHFQLLVLI_					0	0	0			REV__CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant	REV__CA13|p.L149Yfs*65|1|0.26|ENSG00000185015|chr8:85266695-85266695|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	678.427490234375	2	678.426116	1354.83768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.245	1	57.066	56.566	57.566	-0.17904								0	0	0	0.95521	1	22100	22100		3.5965	0	1		+		18609	10073	11556	11613	17869	17869					0.17445435844228996
LFLKKKKKKK	10	Unmodified	_LFLKKKKKKK_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	HCT116MG_D190212_S3	3	644.9605102539062	2	644.9632	1287.91185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.782	1	22.763	22.263	23.263	-0.018869								0	0	0	0.97116	1	8011	8011		0	0	1				18610	7251	11557	11614	17870	17870					0.27940823726385133
LFLLELPLLL	10	Unmodified	_LFLLELPLLL_					0	0	0		ENSG00000204345|ENST00000375352|CD300LD	ENSG00000204345|ENST00000375352|CD300LD	ENSG00000204345|ENST00000375352|CD300LD	MSMS	HCT116MG_D190212_S3	3	592.3905639648438	2	592.388668	1182.76278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.151	1	47.835	47.335	48.335	-0.31596								0	0	0	0.96291	1	18102	18102		1.8442	0	1				18611	6328	11558	11615	17871	17871					0.17871253313001034
LFLLKNGRL	9	Unmodified	_LFLLKNGRL_					0	0	0			REV__TLR8|p.N912Tfs*6|1|0.39|ENSG00000101916|chrX:12921771-12921771|A/-|frameshift_variant	REV__TLR8|p.N912Tfs*6|1|0.39|ENSG00000101916|chrX:12921771-12921771|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	358.5644836425781	3	358.565843	1072.6757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.682	1	32.682	32.182	33.182	0								0	0	0	0.76592	1	12068	12068		15.248	7.6395	1		+		18612	11138	11559	11616	17872	17872					0.14226891881935444
LFLLPPRLTW	10	Unmodified	_LFLLPPRLTW_					0	0	0		ENST00000515519.5_1_5:148442977-148443214:+|nuORF	ENST00000515519.5_1_5:148442977-148443214:+|nuORF	ENST00000515519.5_1_5:148442977-148443214:+|nuORF	MSMS	HCT116MG_D190212_S1	1	628.3829345703125	2	628.381709	1254.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.581	1	52.581	52.081	53.081	0								0	0	0	0.94339	1	20115	20115		6.2058	0.9089	1				18613	8533	11560	11617	17873	17873					0.13168020604530284
LFLQTVWP	8	Unmodified	_LFLQTVWP_					0	0	0		ENST00000479747.1_1_9:130678362-130679146:-|nuORF	ENST00000479747.1_1_9:130678362-130679146:-|nuORF	ENST00000479747.1_1_9:130678362-130679146:-|nuORF	MSMS	HCT116MG_D190212_S4	4	502.2863464355469	2	502.284203	1002.55385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.586	1	37.202	36.702	37.702	-0.3839								0	0	0	0.8837	1	13799	13799		5.7604	0	1				18614	8232	11561	11618	17874	17874					0.05267849799565738
LFLRRRAVV	9	Unmodified	_LFLRRRAVV_					0	0	0		ENST00000562118.1_1_16:68857288-68867399:+|nuORF;nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	ENST00000562118.1_1_16:68857288-68867399:+|nuORF	ENST00000562118.1_1_16:68857288-68867399:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	565.3692626953125	2	565.369467	1128.72438	0.27443	0.00015515	-0.54821	-0.00030994	-0.27378	-0.00015479	565.3694738697372	58.641	0.30596	58.641	58.514	58.82	0					12	5	3	0	0	0	0.76704	1	22626	22626		0.6015	0.14316	1	23784000			18615	996	11562	11619	17875	17875					0.16516805241690236
LFLTFYIKKYT	11	Unmodified	_LFLTFYIKKYT_					0	0	0		ENSG00000167895|ENST00000318430|TMC8;nc|ENSG00000167895|Q8IU68-2|TMC8	ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	HCT116MG_D190212_S1	1	479.2870178222656	3	479.611118	1435.81152	0.26418	0.00012671	-0.40966	-0.00019648	-0.14548	-6.9773E-05	479.61063771720285	53.408	0.30953	53.408	53.153	53.462	0					9	5	2	0	0	0	0.36618	1	20371	20371		0.45452	0	1	9327800			18616	4961	11563	11620	17876	17876					0.11105121882042113
LFLTRSRGRA	10	Unmodified	_LFLTRSRGRA_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	HCT116MG_D190212_S1	1	392.9029541015625	3	392.903518	1175.68872	0.0038069	1.4958E-06	-1.0658	-0.00041876	-1.062	-0.00041726	392.9029921291294	53.59	0.25754	53.59	53.411	53.668	0					7	4	2	0	0	0	0.88647	1	20555	20555		1.9064	0	1	21323000			18617	6211	11564	11621	17877	17877					0.10790722994033786
LFNKKGRIM	9	Unmodified	_LFNKKGRIM_					0	0	0			REV__NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant	REV__NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	553.8304443359375	2	553.828786	1105.64302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.287	1	54.287	53.787	54.787	0								0	0	0	0.76739	1	20813	20813		10.074	1.3285	1		+		18618	13059	11565	11622	17878	17878					0.09442361487435846
LFNLMIKL	8	Unmodified	_LFNLMIKL_					0	0	0			REV__ENST00000552353.2_1_12:93397591-93397657:+|nuORF	REV__ENST00000552353.2_1_12:93397591-93397657:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	496.80242919921875	2	496.304081	990.59361	0.53882	0.00026742	-2.479	-0.0012303	-1.9401	-0.0009629	496.30377880039026	47.188	0.61885	47.066	46.82	47.439	-0.12175					22	11	3	0	0	0	0.81821	1	18036	18036		9.3474	0	1	20746000	+		18619	16430	11566	11623	17879	17879					0.0979365347861858
LFNLMIKL	8	Unmodified	_LFNLMIKL_					0	0	0			REV__ENST00000552353.2_1_12:93397591-93397657:+|nuORF	REV__ENST00000552353.2_1_12:93397591-93397657:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	496.304081	990.59361	0.48761	0.000242	-0.22546	-0.0001119	0.26216	0.00013011	496.3038766489466	47.613	0.60228	47.243	47.124	47.726	-0.36907	0.088595	6.6156E-05	NaN	9.3474	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11228000	+		18620	16430	11566	11623							0.0979365347861858
LFPRRRRRRRR	11	Unmodified	_LFPRRRRRRRR_					0	0	0		ENST00000222747.7_1_7:120497939-120498116:-|nuORF	ENST00000222747.7_1_7:120497939-120498116:-|nuORF	ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MSMS	HCT116MG_D190212_S4	4	813.0175170898438	2	813.019624	1624.02469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.154	1	53.824	53.324	54.324	-0.32923								0	0	0	0.96149	1	20240	20240		0.30703	0	1				18621	6758	11567	11624	17880	17880					0.23764330015637825
LFQNWVNYVWI	11	Unmodified	_LFQNWVNYVWI_					0	0	0		MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	741.3826293945312	2	741.382437	1480.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.674	1	55.488	54.988	55.988	-0.18565								0	0	0	0.95521	1	21466	21466		3.5965	0	1				18622	9338	11568	11625	17881	17881					0.029176099026472002
LFRFLVSILM	10	Unmodified	_LFRFLVSILM_					0	0	0		ENST00000304858.6_1_5:132406177-132408961:+|nuORF	ENST00000304858.6_1_5:132406177-132408961:+|nuORF	ENST00000304858.6_1_5:132406177-132408961:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	620.3724975585938	2	619.87012	1237.72569	0.68206	0.00042279	-0.28422	-0.00017618	0.39784	0.00024661	620.3719657186539	53.696	1.6433	53.696	52.434	54.077	0					53	31	2	0	0	0	0.87801	1	20589	20589		3.9444	0.3479	1	38585000			18623	7022	11569	11626	17882	17882					0.11633258495567134
LFRFQHYKWRF	11	Unmodified	_LFRFQHYKWRF_					0	0	0			REV__nc|ENSG00000198373|O00308-3|WWP2	REV__nc|ENSG00000198373|O00308-3|WWP2	MSMS	HCT116MG_D190212_S2	2	814.4351196289062	2	814.43587	1626.85719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.559	1	51.376	50.876	51.876	-0.18369								0	0	0	0.95925	1	19785	19785		1.4819	1.1313	1		+		18624	14121	11570	11627	17883	17883					0.06883204907649088
LFRGSYQFL	9	Unmodified	_LFRGSYQFL_					0	0	0		nc|ENSG00000173638|P41440-3|SLC19A1;nc|ENSG00000173638|P41440-2|SLC19A1;ENSG00000173638|ENST00000311124|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-SECPEP	HCT116MG_D190212_S2	2	377.2034912109375	3	377.537953	1129.59203	-0.30074	-0.00011354	-0.12257	-4.6274E-05	-0.42331	-0.00015982	377.53776844845504	21.838	0.15595	21.453	21.323	21.479	-0.38503					4	2	2	0	0	0	0.20897	1	7711	7711		34.222	16.075	1	11852000			18625	5297	11571	11628	17884	17884					0.032417357142321634
LFRHRKRHIRK	11	Unmodified	_LFRHRKRHIRK_					0	0	0		ENSG00000186496|ENST00000589332|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	MSMS	HCT116MG_D190212_S3	3	773.989013671875	2	773.986927	1545.9593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.007	1	51.698	51.198	52.198	-0.30927								0	0	0	0.95954	1	19650	19650		1.3295	0	1				18626	5891	11572	11629	17885	17885					0.208159157699356
LFRHRKRHIRK	11	Unmodified	_LFRHRKRHIRK_					0	0	0		ENSG00000186496|ENST00000589332|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	MSMS	HCT116MG_D190212_S4	4	773.6541748046875	2	773.986927	1545.9593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.168	1	51.823	51.323	52.323	-0.34538								0	0	0	0.95954	1	19439	19439		1.3295	0	1				18627	5891	11572	11629	17886	17886					0.208159157699356
LFRKHSPP	8	Unmodified	_LFRKHSPP_					0	0	0			REV__SLC16A6|p.L99Yfs*39|1|0.57|ENSG00000108932|chr17:68274009-68274009|C/-|frameshift_variant	REV__SLC16A6|p.L99Yfs*39|1|0.57|ENSG00000108932|chr17:68274009-68274009|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	491.28631591796875	2	491.285069	980.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.915	1	46.601	46.101	47.101	-0.31405								0	0	0	0.8837	1	17604	17604		15.768	0	1		+		18628	17520	11573	11630	17887	17887					0.06452903608180804
LFRKHSPP	8	Unmodified	_LFRKHSPP_					0	0	0			REV__SLC16A6|p.L99Yfs*39|1|0.57|ENSG00000108932|chr17:68274009-68274009|C/-|frameshift_variant	REV__SLC16A6|p.L99Yfs*39|1|0.57|ENSG00000108932|chr17:68274009-68274009|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	491.2864074707031	2	491.285069	980.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.993	1	46.622	46.122	47.122	-0.37038								0	0	0	0.8837	1	17367	17367		15.768	0	1		+		18629	17520	11573	11630	17888	17888					0.06452903608180804
LFRKPAVW	8	Unmodified	_LFRKPAVW_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;ENST00000488738.5_1_20:61594563-61595083:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MSMS	HCT116MG_D190212_S1	1	508.8059997558594	2	508.805637	1015.59672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.73	1	55.73	55.23	56.23	0								0	0	0	0.8837	1	21408	21408		6.3541	0	1				18630	1762	11574	11631	17889	17889					0.08954664647649224
LFRMLIRLL	9	Unmodified	_LFRMLIRLL_					0	0	0		ENST00000578955.1_1_18:19057140-19088617:+|nuORF;nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L	ENST00000578955.1_1_18:19057140-19088617:+|nuORF	ENST00000578955.1_1_18:19057140-19088617:+|nuORF	MSMS	HCT116MG_D190212_S1	1	392.25439453125	3	392.254612	1173.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.536	1	54.536	54.036	55.036	0								0	0	0	0.7694	1	20916	20916		2.9952	0.90923	1				18631	3718	11575	11632	17890	17890					0.16208384452329483
LFRMLIRLL	9	Unmodified	_LFRMLIRLL_					0	0	0		ENST00000578955.1_1_18:19057140-19088617:+|nuORF;nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L	ENST00000578955.1_1_18:19057140-19088617:+|nuORF	ENST00000578955.1_1_18:19057140-19088617:+|nuORF	MSMS	HCT116MG_D190212_S3	3	392.2544250488281	3	392.254612	1173.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.064	1	53.765	53.265	54.265	-0.29946								0	0	0	0.76991	1	20477	20477		1.1933	0	1				18632	3718	11575	11632	17891	17891					0.16208384452329483
LFRMLRIF	8	Unmodified	_LFRMLRIF_					0	0	0		SCN7A|p.L606S|1|0.3|ENSG00000136546|chr2:166441736-166441736|A/G|missense_variant;SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant;SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant;ENSG00000136546|ENST00000643258|SCN7A	SCN7A|p.L606S|1|0.3|ENSG00000136546|chr2:166441736-166441736|A/G|missense_variant	SCN7A|p.L606S|1|0.3|ENSG00000136546|chr2:166441736-166441736|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	548.3274536132812	2	548.328422	1094.64229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.885	1	44.8	44.3	45.3	-0.084797								0	0	0	0.75335	1	17056	17056		26.341	0	1				18633	3423	11576	11633	17892	17892					0.09875566838354644
LFRQFYQL	8	Unmodified	_LFRQFYQL_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.7640991210938	2	557.805834	1113.59712	0.58158	0.00032441	0.15932	8.8871E-05	0.74091	0.00041328	557.8059793602545	52.199	0.20721	52.012	51.935	52.142	-0.18725					5	3	2	0	0	0	0.2797	1	20082	20082		28.487	15.955	1	9901300		+	18634	548	11577	11634	17893	17893					0.044860395768409944
LFRQFYQL	8	Unmodified	_LFRQFYQL_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MSMS	HCT116MG_D190212_S3	3	557.8060302734375	2	557.805834	1113.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.461	1	52.155	51.655	52.655	-0.30639								0	0	0	0.8837	1	19833	19833		11.64	4.3511	1			+	18635	548	11577	11634	17894	17894					0.044860395768409944
LFRQFYQL	8	Unmodified	_LFRQFYQL_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MATCH	HCT116MG_D190212_S3	3		2	557.805834	1113.59712	0.43868	0.0002447	-0.11505	-6.4176E-05	0.32363	0.00018052	557.8056904395728	52.387	0.15679	52.08	51.986	52.143	-0.30639	0.033971	-0.00017049	NaN	42.095	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2428600		+	18636	548	11577	11634							0.044860395768409944
LFRRAKKVK	9	Unmodified	_LFRRAKKVK_					0	0	0			REV__PTK2|p.P912Lfs*17|2|0.43|ENSG00000169398|chr8:140668399-140668399|G/-|frameshift_variant	REV__PTK2|p.P912Lfs*17|2|0.43|ENSG00000169398|chr8:140668399-140668399|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	573.384521484375	2	573.385117	1144.75568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.225	1	57.225	56.725	57.725	0								0	0	0	0.76973	1	22017	22017		1.8442	0.51471	1		+		18637	13243	11578	11635	17895	17895					0.18909378275793642
LFRRLTKR	8	Unmodified	_LFRRLTKR_					0	0	0			REV__ENSG00000183688|ENST00000329099|RFLNB	REV__ENSG00000183688|ENST00000329099|RFLNB	MSMS	HCT116MG_D190212_S3	3	545.3533325195312	2	545.353817	1088.69308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.855	1	56.576	56.076	57.076	-0.27913								0	0	0	0.8837	1	21593	21593		0.79363	0	1		+		18638	13774	11579	11636	17896	17896					0.15228232207596193
LFRWWRRRWNP	11	Unmodified	_LFRWWRRRWNP_					0	0	0		ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	MSMS	HCT116MG_D190212_S1	1	836.9615478515625	2	836.957835	1671.90112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.283	1	40.283	39.783	40.783	0								0	0	0	0.96192	1	15136	15136		0.30703	0.30703	1				18639	7817	11580	11637	17897	17897					0.09204234124672439
LFRYRLRELQ	10	Unmodified	_LFRYRLRELQ_					0	0	0		ENSG00000183208|ENST00000329600|GDPGP1	ENSG00000183208|ENST00000329600|GDPGP1	ENSG00000183208|ENST00000329600|GDPGP1	MSMS	HCT116MG_D190212_S1	1	697.4078369140625	2	697.406778	1392.799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.387	1	45.387	44.887	45.887	0								0	0	0	0.96521	1	17195	17195		1.3295	0.13619	1				18640	5706	11581	11638	17898	17898					0.11831523262412702
LFSLLPTTKK	10	Unmodified	_LFSLLPTTKK_					0	0	0			REV__ENST00000478840.1_1_X:118974578-118977244:-|nuORF	REV__ENST00000478840.1_1_X:118974578-118977244:-|nuORF	MSMS	HCT116MG_D190212_S1	1	574.454345703125	2	574.357899	1146.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.663	1	34.663	34.163	35.163	0								0	0	0	0.93466	1	12869	12869		8.1555	1.9497	1		+		18641	11808	11582	11639	17899	17899					0.1337632161369129
LFSRRKLFKY	10	Unmodified	_LFSRRKLFKY_					0	0	0			REV__ENST00000422754.1_1_1:185276622-185276691:-|nuORF	REV__ENST00000422754.1_1_1:185276622-185276691:-|nuORF	MSMS	HCT116MG_D190212_S1	1	679.4116821289062	2	679.408789	1356.80303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.793	1	50.793	50.293	51.293	0								0	0	0	0.96377	1	19390	19390		1.6526	0.17072	1		+		18642	15530	11583	11640	17900	17900					0.13889612756111092
LFTAAFGG	8	Unmodified	_LFTAAFGG_					0	0	0			REV__ENST00000366769.7_1_1:227505246-227505423:-|nuORF	REV__ENST00000366769.7_1_1:227505246-227505423:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	783.4041748046875	1	783.403566	782.39629	1.166	0.00091341	0.048759	3.8198E-05	1.2147	0.00095161	783.4032728780575	52.148	0.36166	51.96	51.78	52.142	-0.18725					13	6	3	0	0	0	0.55314	1	20029	20029		36.466	4.0125	1	58489000	+		18643	15110	11584	11641	17901	17901					-0.00361229739803548
LFTAFENALGL	11	Unmodified	_LFTAFENALGL_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000515207.1_1_5:94872443-94877598:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MSMS	HCT116MG_D190212_S2	2	598.3236694335938	2	598.321514	1194.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.369	1	52.182	51.682	52.682	-0.18725								0	0	0	0.93552	1	20115	20115		13.906	3.8321	1				18644	6250	11585	11642	17902	17902					0.03894567820270822
LFTELCHPP	9	Unmodified	_LFTELCHPP_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.L1842Yfs*10|1|0.19|ENSG00000163625|chr4:84755300-84755300|A/-|frameshift_variant;WDFY3|p.N1207Tfs*16|1|0.37|ENSG00000163625|chr4:84789775-84789775|T/-|frameshift_variant;ENST00000504990.1_1_4:85771028-85781672:-|nuORF;WDFY3|p.L362Yfs*17|1|0.35|ENSG00000163625|chr4:84826853-84826853|A/-|frameshift_variant;ENST00000426414.6_1_4:85730999-85781744:-|nuORF;WDFY3|p.L1060Cfs*41|1|0.4|ENSG00000163625|chr4:84794968-84794968|A/-|frameshift_variant	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	HCT116MG_D190212_S2	2	1056.5194091796875	1	1056.51828	1055.511	0.38523	0.00040701	0.45882	0.00048475	0.84406	0.00089176	1056.51888624857	44.122	0.36169	44.044	43.865	44.227	-0.078373					13	6	3	0	0	0	0.10839	1	16767	16767		56.541	2.9657	1	31855000			18645	4614	11586	11643	17903	17903					-0.014532883201809454
LFTGYFRS	8	Unmodified	_LFTGYFRS_					0	0	0		AHDC1|p.F1046Sfs*96|1|0.2|ENSG00000126705|chr1:27548981-27548981|G/-|frameshift_variant;AHDC1|p.K985Sfs*157|1|0.06|ENSG00000126705|chr1:27549162-27549162|T/-|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1	AHDC1|p.F1046Sfs*96|1|0.2|ENSG00000126705|chr1:27548981-27548981|G/-|frameshift_variant	AHDC1|p.F1046Sfs*96|1|0.2|ENSG00000126705|chr1:27548981-27548981|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	495.75592041015625	2	495.75581	989.497067	0.4786	0.00023727	-0.1714	-8.4974E-05	0.30719	0.00015229	495.7557321061031	46.297	0.2068	46.297	46.13	46.337	0					5	3	2	0	0	0	0.66231	1	17574	17574		26.884	0	1	11146000			18646	81	11587	11644	17904	17904					0.0018980224305096272
LFTLLPRVRP	10	Unmodified	_LFTLLPRVRP_					0	0	0			REV__nc|nan|Q5T0Z8-2|C6orf132	REV__nc|nan|Q5T0Z8-2|C6orf132	MSMS	HCT116MG_D190212_S2	2	606.386474609375	2	606.384783	1210.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.535	1	57.36	56.86	57.86	-0.17494								0	0	0	0.90023	1	22217	22217		15.847	10.617	1		+		18647	13945	11588	11645	17905	17905					0.15806538836068285
LFTPAFAA	8	Unmodified	_LFTPAFAA_					0	0	0			REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	MSMS	HCT116MG_D190212_S2	2	419.2279052734375	2	419.228897	836.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.135	1	58.97	58.47	59.47	-0.1653								0	0	0	0.8837	1	22869	22869		0.79363	0	1		+		18648	14085	11589	11646	17906	17906					0.01847629811322804
LFTTHLQLI	9	Unmodified	_LFTTHLQLI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MSMS	HCT116MG_D190212_S1	1	543.3206787109375	2	543.321317	1084.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.948	1	50.948	50.448	51.448	0								0	0	0	0.30227	1	19453	19453		39.957	0.0076237	1				18649	905	11590	11647	17907	17907					0.08915192891095103
LFVFRKKRNRI	11	Unmodified	_LFVFRKKRNRI_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MSMS	HCT116MG_D190212_S1	1	738.968994140625	2	738.967337	1475.92012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.667	1	47.667	47.167	48.167	0								0	0	0	0.95925	1	18118	18118		1.4819	0.28856	1		+		18650	10379	11591	11648	17908	17908					0.20119770695737316
LFVIHVVQIVC	11	Unmodified	_LFVIHVVQIVC_					0	0	0			REV__ENST00000252711.6_1_2:240900063-240900423:-|nuORF	REV__ENST00000252711.6_1_2:240900063-240900423:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	635.8742065429688	2	635.373026	1268.7315	0.62352	0.00039617	-0.67191	-0.00042691	-0.048386	-3.0743E-05	635.3726269707805	52.334	1.3904	52.147	51.369	52.76	-0.18725					61	26	3	0	0	0	0.74191	1	20245	20245		3.5965	1.7523	1	20954000	+		18651	14589	11592	11649	17909	17909					0.1078835700725449
LFVKRLRRKTY	11	Unmodified	_LFVKRLRRKTY_					0	0	0		ENSG00000196460|ENST00000428343|RFX8;nc|ENSG00000196460|Q6ZV50|RFX8	ENSG00000196460|ENST00000428343|RFX8	ENSG00000196460|ENST00000428343|RFX8	MSMS	HCT116MG_D190212_S3	3	740.4641723632812	2	740.46717	1478.91979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.447	1	55.155	54.655	55.655	-0.2918								0	0	0	0.96024	1	21033	21033		0.96228	0.61164	1				18652	6074	11593	11650	17910	17910					0.1994835097586929
LFVLFLGI	8	Unmodified	_LFVLFLGI_					0	0	0		nc|ENSG00000284723|Q8NH09|OR8S1	nc|ENSG00000284723|Q8NH09|OR8S1	nc|ENSG00000284723|Q8NH09|OR8S1	MSMS	HCT116MG_D190212_S1	1	461.2937316894531	2	461.29404	920.573526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.341	1	40.341	39.841	40.841	0								0	0	0	0.8837	1	15160	15160		11.114	0	1				18653	9668	11594	11651	17911	17911					0.11006225810319847
LFVSKRESFWL	11	Unmodified	_LFVSKRESFWL_					0	0	0			REV__ENST00000366525.8_2_1:245025904-245026177:-|nuORF	REV__ENST00000366525.8_2_1:245025904-245026177:-|nuORF	MSMS	HCT116MG_D190212_S2	2	706.392578125	2	706.390262	1410.76597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.905	1	56.726	56.226	57.226	-0.17904								0	0	0	0.94924	1	21962	21962		6.7232	0.51738	1		+		18654	15103	11595	11652	17912	17912					0.07701896419712284
LFYIKVQP	8	Unmodified	_LFYIKVQP_					0	0	0			REV__ENST00000453163.6_1_6:170891974-170892115:-|nuORF	REV__ENST00000453163.6_1_6:170891974-170892115:-|nuORF	MSMS	HCT116MG_D190212_S4	4	504.3017578125	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.981	1	36.596	36.096	37.096	-0.38486								0	0	0	0.8837	1	13554	13554		5.7604	0.52976	1		+		18655	15725	11596	11653	17913	17913					0.08212422833662458
LFYLLFLF	8	Unmodified	_LFYLLFLF_					0	0	0			REV__ENSG00000127362|ENST00000247879|TAS2R3	REV__ENSG00000127362|ENST00000247879|TAS2R3	MULTI-SECPEP	HCT116MG_D190212_S1	1	538.79150390625	2	538.314972	1074.61539	0.49634	0.00026719	-0.37301	-0.0002008	0.12333	6.639E-05	538.3146098768399	47.105	0.31046	47.105	46.907	47.217	0					8	5	2	0	0	0	0.32196	1	17850	17850		2.8892	0	1	5278300	+		18656	11854	11597	11654	17914	17914					0.08106781498827331
LFYLLIILIRD	11	Unmodified	_LFYLLIILIRD_					0	0	0			REV__tr|U7T022|U7T022_FUSNUPrepilintypeIVendopeptidasepeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00779PE=3SV=1	REV__tr|U7T022|U7T022_FUSNUPrepilintypeIVendopeptidasepeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00779PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	696.4375	2	696.436681	1390.85881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.66	1	52.473	51.973	52.973	-0.18725								0	0	0	0.95925	1	20234	20234		1.4819	0	1		+		18657	17888	11598	11655	17915	17915					0.17901401153085317
LGAAEVAAV	9	Unmodified	_LGAAEVAAV_					0	0	0			REV__ENST00000464060.5_1_3:65438903-66023983:-|nuORF	REV__ENST00000464060.5_1_3:65438903-66023983:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	800.4518432617188	1	800.451245	799.443968	0.83356	0.00066722	-0.07409	-5.9305E-05	0.75947	0.00060792	800.4510647206338	34.751	0.91968	34.365	34.087	35.006	-0.38606					46	17	4	0	0	0	0.10839	1	12894	12894		56.541	1.7677	1	473070000	+		18658	12596	11599	11656	17916	17916					0.036224244603772604
LGAEALSRA	9	Unmodified	_LGAEALSRA_					0	0	0		ENST00000439817.5_1_10:103573317-103578203:-|nuORF	ENST00000439817.5_1_10:103573317-103578203:-|nuORF	ENST00000439817.5_1_10:103573317-103578203:-|nuORF	MSMS	HCT116MG_D190212_S4	4	444.25054931640625	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.356	1	29.999	29.499	30.499	-0.3571								0	0	0	0.76575	1	11001	11001		15.847	0	1				18659	7911	11600	11657	17917	17917					0.03944614237661881
LGAEEGPSP	9	Unmodified	_LGAEEGPSP_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	856.404296875	1	856.404689	855.397412	0.85243	0.00073002	0.17329	0.0001484	1.0257	0.00087843	856.4047266818325	31.911	1.2978	31.67	31.207	32.505	-0.24043					41	24	2	0	0	0	0.035402	1	11940	11940		81.864	0.25097	1	22156000	+		18660	13438	11601	11658	17918	17918					-0.036070601615620035
LGAEEQSP	8	Unmodified	_LGAEEQSP_					0	0	0			REV__nc|ENSG00000140694|O95453-4|PARN	REV__nc|ENSG00000140694|O95453-4|PARN	MULTI-SECPEP	HCT116MG_D190212_S4	4	830.4252319335938	1	830.389039	829.381762	0.75293	0.00062522	1.0779	0.00089509	1.8308	0.0015203	830.3889306656841	28.791	0.623	28.45	28.107	28.73	-0.34059					18	11	3	0	0	0	0.23191	1	10459	10459		34.187	0	1	6323000	+		18661	12307	11602	11659	17919	17919					-0.03975346678612368
LGAEETGVVHQ	11	Unmodified	_LGAEETGVVHQ_					0	0	0			REV__nc|ENSG00000130856|Q9UL36-2|ZNF236	REV__nc|ENSG00000130856|Q9UL36-2|ZNF236	MSMS	HCT116MG_D190212_S3	3	570.2879028320312	2	570.288202	1138.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.47	1	21.488	20.988	21.988	0.018446								0	0	0	0.85129	1	7483	7483		26.268	0	1		+		18662	11943	11603	11660	17920	17920					-0.0018866774162233924
LGAGKPDGPA	10	Unmodified	_LGAGKPDGPA_					0	0	0			REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	882.4688110351562	1	882.467958	881.460681	0.71404	0.00063011	-0.0081475	-7.1899E-06	0.70589	0.00062292	882.4677591344841	25.634	0.41573	25.265	25.082	25.498	-0.36914					15	7	3	0	0	0	0.023158	1	9242	9242		114.65	25.695	1	34545000	+		18663	16457	11604	11661	17921	17921					0.015209253463240202
LGAGKPDGPA	10	Unmodified	_LGAGKPDGPA_					0	0	0			REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	882.4686279296875	1	882.467958	881.460681	0.87605	0.00077309	-0.076871	-6.7837E-05	0.79918	0.00070525	882.4678259006018	25.458	0.52009	25.352	25.152	25.672	-0.10618					21	9	3	0	0	0	0.029414	1	9083	9083		103.35	24.625	1	45095000	+		18664	16457	11604	11661	17922	17922					0.015209253463240202
LGAGKPDGPA	10	Unmodified	_LGAGKPDGPA_					0	0	0			REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	882.4678955078125	1	882.467958	881.460681	0.91654	0.00080882	-0.18211	-0.00016071	0.73443	0.00064811	882.4676955127564	25.62	0.46821	25.33	25.1	25.569	-0.28941					22	8	4	0	0	0	0.042655	1	9053	9053		92.653	20.731	1	36672000	+		18665	16457	11604	11661	17923	17923					0.015209253463240202
LGAGKPDGPA	10	Unmodified	_LGAGKPDGPA_					0	0	0			REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	882.467958	881.460681	0.5572	0.00049171	0.039931	3.5237E-05	0.59713	0.00052695	882.4679106651131	25.261	0.20829	25.261	25.144	25.353	0	-0.040678	0.00013468	NaN	114.65	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6055500	+		18666	16457	11604	11661							0.015209253463240202
LGAGKPDGPA	10	Unmodified	_LGAGKPDGPA_					0	0	0			REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	882.467958	881.460681	0.71404	0.00063011	-0.0081475	-7.1899E-06	0.70589	0.00062292	882.4677591344841	25.634	0.41573	25.265	25.082	25.498	-0.36914	-0.037046	9.2251E-05	NaN	114.65	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34545000	+		18667	16457	11604	11661							0.015209253463240202
LGAGKPDGPA	10	Unmodified	_LGAGKPDGPA_					0	0	0			REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	882.467958	881.460681	0.87605	0.00077309	-0.076871	-6.7837E-05	0.79918	0.00070525	882.4678259006018	25.458	0.52009	25.352	25.152	25.672	-0.10618	0.049557	3.1605E-05	NaN	114.65	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45095000	+		18668	16457	11604	11661							0.015209253463240202
LGAGKPDGPA	10	Unmodified	_LGAGKPDGPA_					0	0	0			REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	REV__ENST00000555117.1_1_14:31343755-31344058:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	882.467958	881.460681	0.91654	0.00080882	-0.18211	-0.00016071	0.73443	0.00064811	882.4676955127564	25.62	0.46821	25.33	25.1	25.569	-0.28941	0.028167	-6.1264E-05	NaN	114.65	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36672000	+		18669	16457	11604	11661							0.015209253463240202
LGAGPAPSRPT	11	Unmodified	_LGAGPAPSRPT_					0	0	0			REV__ENST00000536376.5_1_16:28891387-28892249:+|nuORF	REV__ENST00000536376.5_1_16:28891387-28892249:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	512.7513427734375	2	512.282723	1022.55089	0.18908	9.6861E-05	-0.20075	-0.00010284	-0.011671	-5.979E-06	512.2822542438669	25.665	0.52046	25.295	24.978	25.498	-0.36914					13	9	2	0	0	0	0.3312	1	9186	9186		15.248	0	1	4908700	+		18670	16343	11605	11662	17924	17924					0.0405197467475773
LGAGPEAGA	9	Unmodified	_LGAGPEAGA_					0	0	0			REV__ENST00000379942.4_1_X:19002209-19002593:-|nuORF	REV__ENST00000379942.4_1_X:19002209-19002593:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	742.3736572265625	1	742.372995	741.365718	0.85094	0.00063171	0.10705	7.9469E-05	0.95799	0.00071118	742.3729109144144	21.252	0.52996	21.252	21.012	21.542	0					14	9	2	0	0	0	0.026974	1	7450	7450		89.427	22.083	1	10820000	+		18671	15264	11606	11663	17925	17925					-0.015310081248571805
LGAGPEAGA	9	Unmodified	_LGAGPEAGA_					0	0	0			REV__ENST00000379942.4_1_X:19002209-19002593:-|nuORF	REV__ENST00000379942.4_1_X:19002209-19002593:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	742.3558959960938	1	742.372995	741.365718	0.8643	0.00064163	0.031806	2.3612E-05	0.8961	0.00066524	742.3728645481572	21.413	0.88284	21.195	20.802	21.685	-0.21832					33	16	3	0	0	0	0.043314	1	7337	7337		77.984	3.5616	1	51564000	+		18672	15264	11606	11663	17926	17926					-0.015310081248571805
LGAGPGSP	8	Unmodified	_LGAGPGSP_					0	0	0		SPATA2L|p.R215Efs*102|1|0.53|ENSG00000158792|chr16:89697966-89697966|G/-|frameshift_variant	SPATA2L|p.R215Efs*102|1|0.53|ENSG00000158792|chr16:89697966-89697966|G/-|frameshift_variant	SPATA2L|p.R215Efs*102|1|0.53|ENSG00000158792|chr16:89697966-89697966|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	655.341796875	1	655.340966	654.33369	0.72814	0.00047718	-0.030746	-2.0149E-05	0.6974	0.00045703	655.3408091770594	24.931	1.2494	24.842	24.024	25.274	-0.088634					39	23	2	0	0	0	0.21411	1	8717	8717		70.865	0	1	15749000			18673	18226	11607	11664	17927	17927					-0.007303758080070111
LGAGPGSP	8	Unmodified	_LGAGPGSP_					0	0	0		SPATA2L|p.R215Efs*102|1|0.53|ENSG00000158792|chr16:89697966-89697966|G/-|frameshift_variant	SPATA2L|p.R215Efs*102|1|0.53|ENSG00000158792|chr16:89697966-89697966|G/-|frameshift_variant	SPATA2L|p.R215Efs*102|1|0.53|ENSG00000158792|chr16:89697966-89697966|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	655.34130859375	1	655.340966	654.33369	0.75295	0.00049344	0.018929	1.2405E-05	0.77188	0.00050584	655.3408286199368	25.073	0.98685	24.793	24.123	25.11	-0.27958					38	18	3	0	0	0	0.11846	1	8943	8943		90.836	19.971	1	13675000			18674	18226	11607	11664	17928	17928					-0.007303758080070111
LGAGPGSP	8	Unmodified	_LGAGPGSP_					0	0	0		SPATA2L|p.R215Efs*102|1|0.53|ENSG00000158792|chr16:89697966-89697966|G/-|frameshift_variant	SPATA2L|p.R215Efs*102|1|0.53|ENSG00000158792|chr16:89697966-89697966|G/-|frameshift_variant	SPATA2L|p.R215Efs*102|1|0.53|ENSG00000158792|chr16:89697966-89697966|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	655.340966	654.33369	0.63226	0.00041435	0.061615	4.0379E-05	0.69388	0.00045473	655.3408270844875	25.203	0.9891	24.828	24.087	25.076	-0.37521	0.0065676	3.7625E-05	NaN	90.836	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12412000			18675	18226	11607	11664							-0.007303758080070111
LGAHRIYNDR	10	Unmodified	_LGAHRIYNDR_					0	0	0		ENST00000393784.7_1_5:172324011-172336690:+|nuORF;ENST00000520642.5_1_5:172324011-172341782:+|nuORF	ENST00000393784.7_1_5:172324011-172336690:+|nuORF	ENST00000393784.7_1_5:172324011-172336690:+|nuORF	MSMS	HCT116MG_D190212_S3	3	405.55169677734375	3	405.551144	1213.6316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.876	1	13.951	13.451	14.451	0.074899								0	0	0	0.96769	1	4430	4430		0.77653	0	1				18676	7629	11608	11665	17929	17929					0.033332557176208866
LGAKGSAY	8	Unmodified	_LGAKGSAY_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;ENST00000464988.1_1_3:50154644-50155886:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MSMS	HCT116MG_D190212_S2	2	383.7082824707031	2	383.708328	765.402104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.313	1	25.951	25.451	26.451	-0.36164								0	0	0	0.8837	1	9514	9514		12.532	0	1				18677	796	11609	11666	17930	17930					0.010018687718343244
LGALYTYWVP	10	Unmodified	_LGALYTYWVP_					0	0	0		ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A	ENSG00000054793|ENST00000338821|ATP9A	ENSG00000054793|ENST00000338821|ATP9A	MSMS	HCT116MG_D190212_S2	2	394.8771057128906	3	394.877975	1181.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0368	1	4.9181	4.4181	5.4181	-0.11871								0	0	0	0.96769	1	1591	1591		0.77653	0.078866	1				18678	1074	11610	11667	17931	17931					0.028554866541753654
LGAPASPGL	9	Unmodified	_LGAPASPGL_					0	0	0		ENST00000367306.5_1_1:201453202-201453502:-|nuORF	ENST00000367306.5_1_1:201453202-201453502:-|nuORF	ENST00000367306.5_1_1:201453202-201453502:-|nuORF	MSMS	HCT116MG_D190212_S3	3	391.7225341796875	2	391.723978	781.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.968	1	43.662	43.162	44.162	-0.30616								0	0	0	0.768	1	16422	16422		7.9102	2.6795	1				18679	7386	11611	11668	17932	17932					0.033944418059491
LGAPGFVA	8	Unmodified	_LGAPGFVA_					0	0	0			REV__ENST00000609471.1_1_9:139694428-139695055:+|nuORF	REV__ENST00000609471.1_1_9:139694428-139695055:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	366.2078552246094	2	366.207964	730.401375	-0.16633	-6.091E-05	0.1058	3.8745E-05	-0.060524	-2.2164E-05	366.2079191217116	31.172	0.93921	30.911	30.239	31.179	-0.26071					41	21	3	0	0	0	0.68942	1	11396	11396		24.21	0	1	8622500	+		18680	15581	11612	11669	17933	17933					0.025390741228079605
LGAPGFVA	8	Unmodified	_LGAPGFVA_					0	0	0			REV__ENST00000609471.1_1_9:139694428-139695055:+|nuORF	REV__ENST00000609471.1_1_9:139694428-139695055:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	366.2079162597656	2	366.207964	730.401375	-0.06349	-2.325E-05	0.053572	1.9618E-05	-0.0099179	-3.632E-06	366.20784836962173	31.283	1.0431	30.913	30.188	31.231	-0.37026					47	25	3	0	0	0	0.68942	1	11158	11158		24.21	0	1	9943500	+		18681	15581	11612	11669	17934	17934					0.025390741228079605
LGASSVVINI	10	Unmodified	_LGASSVVINI_					0	0	0			REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	MULTI-MSMS	HCT116MG_D190212_S2	2	486.78997802734375	2	486.78985	971.565146	0.14432	7.0256E-05	0.039029	1.8999E-05	0.18335	8.9255E-05	486.78989066438675	21.267	0.15451	20.884	20.807	20.961	-0.38288					4	2	2	0	0	0	0.51145	1	7503	7503		34.402	0	1	8682600	+		18682	13266	11613	11670	17935	17935					0.07822627103041668
LGATAPGPA	9	Unmodified	_LGATAPGPA_					0	0	0		ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	754.4100952148438	1	754.40938	753.402104	0.44907	0.00033878	0.31441	0.00023719	0.76347	0.00057597	754.4095399482716	31.971	0.72913	31.695	31.111	31.84	-0.27598					17	13	2	0	0	0	0.13706	1	11626	11626		50.855	10.898	1	5362900			18683	7394	11614	11671	17936	17936					0.015538687718503752
LGATAPGPA	9	Unmodified	_LGATAPGPA_					0	0	0		ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	754.4099731445312	1	754.40938	753.402104	0.75382	0.00056869	-0.0039664	-2.9923E-06	0.74985	0.0005657	754.4093326339749	32.017	0.77892	31.642	31.07	31.849	-0.37529					20	14	2	0	0	0	0.13706	1	11574	11574		50.855	6.448	1	4457000			18684	7394	11614	11671	17937	17937					0.015538687718503752
LGCFCCCV	8	Unmodified	_LGCFCCCV_					0	0	0		nc|ENSG00000136944|O60663-2|LMX1B;ENSG00000136944|ENST00000373474|LMX1B;nc|ENSG00000136944|O60663-3|LMX1B	nc|ENSG00000136944|O60663-2|LMX1B	nc|ENSG00000136944|O60663-2|LMX1B	MSMS	HCT116MG_D190212_S4	4	424.15362548828125	2	424.152106	846.289658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.414	1	12.245	11.745	12.745	-0.16903								0	0	0	0.8837	1	3854	3854		0.79363	0.19213	1				18685	3452	11615	11672	17938	17938					-0.13963510884161678
LGCMDDYT	8	Unmodified	_LGCMDDYT_					0	0	0		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;TBCD|p.T861M|1|0.19|ENSG00000141556|chr17:82927296-82927296|C/T|missense_variant;DNAJC7-TBCD|1|fusion;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MSMS	HCT116MG_D190212_S3	3	459.17230224609375	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.955	1	12.01	11.51	12.51	0.055045								0	0	0	0.8837	1	3696	3696		0.79363	0	1				18686	8897	11616	11673	17939	17939					-0.1308575503934435
LGCMDDYT	8	Unmodified	_LGCMDDYT_					0	0	0		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;TBCD|p.T861M|1|0.19|ENSG00000141556|chr17:82927296-82927296|C/T|missense_variant;DNAJC7-TBCD|1|fusion;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MSMS	HCT116MG_D190212_S3	3	459.1722717285156	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.48	1	12.543	12.043	13.043	0.06246								0	0	0	0.8837	1	3894	3894		0.79363	0	1				18687	8897	11616	11673	17940	17940					-0.1308575503934435
LGCMDDYT	8	Unmodified	_LGCMDDYT_					0	0	0		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;TBCD|p.T861M|1|0.19|ENSG00000141556|chr17:82927296-82927296|C/T|missense_variant;DNAJC7-TBCD|1|fusion;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MSMS	HCT116MG_D190212_S3	3	458.9093017578125	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.685	1	12.748	12.248	13.248	0.06246								0	0	0	0.8837	1	3975	3975		0.79363	0	1				18688	8897	11616	11673	17941	17941					-0.1308575503934435
LGCMDDYT	8	Unmodified	_LGCMDDYT_					0	0	0		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;TBCD|p.T861M|1|0.19|ENSG00000141556|chr17:82927296-82927296|C/T|missense_variant;DNAJC7-TBCD|1|fusion;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MSMS	HCT116MG_D190212_S3	3	459.1722717285156	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.028	1	13.097	12.597	13.597	0.069158								0	0	0	0.8837	1	4107	4107		0.79363	0	1				18689	8897	11616	11673	17942	17942					-0.1308575503934435
LGCMDDYT	8	Unmodified	_LGCMDDYT_					0	0	0		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;TBCD|p.T861M|1|0.19|ENSG00000141556|chr17:82927296-82927296|C/T|missense_variant;DNAJC7-TBCD|1|fusion;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MSMS	HCT116MG_D190212_S3	3	459.1722106933594	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.591	1	13.666	13.166	14.166	0.074899								0	0	0	0.8837	1	4320	4320		0.79363	0	1				18690	8897	11616	11673	17943	17943					-0.1308575503934435
LGCMDDYT	8	Unmodified	_LGCMDDYT_					0	0	0		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;TBCD|p.T861M|1|0.19|ENSG00000141556|chr17:82927296-82927296|C/T|missense_variant;DNAJC7-TBCD|1|fusion;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MSMS	HCT116MG_D190212_S3	3	459.1724548339844	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.804	1	14.887	14.387	15.387	0.083271								0	0	0	0.8837	1	4795	4795		2.8892	0	1				18691	8897	11616	11673	17944	17944					-0.1308575503934435
LGCMDDYT	8	Unmodified	_LGCMDDYT_					0	0	0		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;TBCD|p.T861M|1|0.19|ENSG00000141556|chr17:82927296-82927296|C/T|missense_variant;DNAJC7-TBCD|1|fusion;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MSMS	HCT116MG_D190212_S4	4	459.171875	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.973	1	12.808	12.308	13.308	-0.16496								0	0	0	0.8837	1	4050	4050		0.79363	0	1				18692	8897	11616	11673	17945	17945					-0.1308575503934435
LGDADCHMC	9	Unmodified	_LGDADCHMC_					0	0	0			REV__BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant	REV__BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	482.6687316894531	2	482.669705	963.324858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.681	1	12.743	12.243	13.243	0.06246								0	0	0	0.77008	1	3974	3974		0.6015	0.076735	1		+		18693	10041	11617	11674	17946	17946					-0.1582717682265411
LGDAGRHVVEN	11	Unmodified	_LGDAGRHVVEN_					0	0	0		ENST00000201031.2_1_20:55204569-55204623:+|nuORF	ENST00000201031.2_1_20:55204569-55204623:+|nuORF	ENST00000201031.2_1_20:55204569-55204623:+|nuORF	MSMS	HCT116MG_D190212_S4	4	583.8002319335938	2	583.799269	1165.58398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.893	1	22.656	22.156	23.156	-0.23758								0	0	0	0.84073	1	7988	7988		27.629	3.839	1				18694	6723	11618	11675	17947	17947					0.007815567268380619
LGDAVQLAS	9	Unmodified	_LGDAVQLAS_					0	0	0		ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A	ENSG00000219073|ENST00000337107|CELA3B	ENSG00000219073|ENST00000337107|CELA3B	MULTI-MSMS	HCT116MG_D190212_S4	4	873.468994140625	1	873.467623	872.460347	0.80942	0.00070701	0.11255	9.8309E-05	0.92197	0.00080531	873.4675028925894	41.232	0.18016	40.854	40.716	40.896	-0.37732					5	3	2	0	0	0	0.084109	1	15155	15155		61.357	0	1	4587200			18695	3776	11619	11676	17948	17948					0.01901505626483413
LGDEDSEKKRK	11	Unmodified	_LGDEDSEKKRK_					0	0	0		RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant;nc|ENSG00000159788|O14924-5|RGS12;RGS12|p.K1178Nfs*32|1|0.71|ENSG00000159788|chr4:3428672-3428672|A/-|frameshift_variant;RGS12|p.Q1292Rfs*49|1|0.23|ENSG00000159788|chr4:3430704-3430704|C/-|frameshift_variant;nc|ENSG00000159788|O14924-4|RGS12;RGS12|p.Q1363Rfs*30|1|0.3|ENSG00000159788|chr4:3430923-3430923|C/-|frameshift_variant;ENSG00000159788|ENST00000336727|RGS12;ENST00000506998.5_1_4:3371967-3419414:+|nuORF;nc|ENSG00000159788|O14924-7|RGS12;nc|ENSG00000159788|O14924-6|RGS12;ENST00000508158.5_1_4:3386893-3430067:+|nuORF;nc|ENSG00000159788|O14924-2|RGS12;nc|ENSG00000159788|O14924-3|RGS12	RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant	RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	435.8154296875	3	435.565008	1303.67319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.018	1	14.093	13.593	14.593	0.074899								0	0	0	0.96121	1	4484	4484		0.45452	0.21867	1				18696	4424	11620	11677	17949	17949					0.03350346895649636
LGDEGPSV	8	Unmodified	_LGDEGPSV_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	HCT116MG_D190212_S4	4	774.3740234375	1	773.367575	772.360298	0.89562	0.00069264	1.8371	0.0014207	2.7327	0.0021134	773.3675265207388	34.267	0.46732	33.882	33.568	34.035	-0.38558					10	8	2	0	0	0	0.5791	1	12524	12524		34.187	0	1	1583300	+		18697	17134	11621	11678	17950	17950					-0.034987317073273516
LGDEISKGILK	11	Unmodified	_LGDEISKGILK_					0	0	0		tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1	tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1	tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	586.8482666015625	2	586.847896	1171.68124	0.81991	0.00048116	-0.13024	-7.6432E-05	0.68967	0.00040473	586.8476389680847	43.763	0.20556	43.685	43.556	43.762	-0.078373					8	3	3	0	0	0	0.50128	1	16616	16616		46.022	2.2499	1	35788000			18698	18362	11622	11679	17951	17951					0.10226525883103932
LGDFNADCSY	10	Unmodified	_LGDFNADCSY_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7183227539062	2	552.718764	1103.42298	0.48817	0.00026982	-3.0827	-0.0017038	-2.5945	-0.001434	552.7177910146362	37.39	0.31197	37.089	36.925	37.237	-0.30137					16	4	5	0	0	0	0.65652	2	13862	13862;13879		24.021	6.5061	1	9534400			18699	4964	11623	11680	17952;17953	17952					-0.12459953701454651
LGDFRFGKCP	10	Unmodified	_LGDFRFGKCP_					0	0	0		nc|ENSG00000152670|Q9NQI0-3|DDX4;nc|ENSG00000152670|Q9NQI0-2|DDX4;nc|ENSG00000152670|Q9NQI0-4|DDX4;ENSG00000152670|ENST00000505374|DDX4	nc|ENSG00000152670|Q9NQI0-3|DDX4	nc|ENSG00000152670|Q9NQI0-3|DDX4	MULTI-MSMS	HCT116MG_D190212_S4	4	570.2885131835938	2	570.286951	1138.55935	0.60276	0.00034375	0.32307	0.00018424	0.92584	0.00052799	570.2872414865527	21.55	0.77889	21.332	21.114	21.893	-0.21832					17	14	2	0	0	0	0.72678	1	7529	7529		18.146	0	1	1329800			18700	4160	11624	11681	17954	17954					-0.0043879468025807
LGDGLKDIFQ	10	Unmodified	_LGDGLKDIFQ_					0	0	0			REV__tr|U7T509|U7T509_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00265PE=4SV=1	REV__tr|U7T509|U7T509_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00265PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	553.298095703125	2	553.298039	1104.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.964	1	26.653	26.153	27.153	-0.3114								0	0	0	0.89712	1	9631	9631		23.79	8.9515	1		+		18701	17977	11625	11682	17955	17955					0.03341708269135779
LGDIKRRRRK	10	Unmodified	_LGDIKRRRRK_					0	0	0		SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	433.2806091308594	3	433.2811	1296.82147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.982	1	35.982	35.482	36.482	0								0	0	0	0.96291	1	13402	13402		0.77653	0	1				18702	18236	11626	11683	17956	17956					0.18493167450674264
LGDKPYGCLLC	11	Unmodified	_LGDKPYGCLLC_					0	0	0		nc|ENSG00000172748|Q8TC21-2|ZNF596;ZNF596|p.F488Lfs*15|1|0.21|ENSG00000172748|chr8:246306-246306|T/-|frameshift_variant;ENSG00000172748|ENST00000398612|ZNF596	nc|ENSG00000172748|Q8TC21-2|ZNF596	nc|ENSG00000172748|Q8TC21-2|ZNF596	MSMS	HCT116MG_D190212_S4	4	591.2882690429688	2	591.288302	1180.56205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.086	1	16.918	16.418	17.418	-0.16858								0	0	0	0.94012	1	5642	5642		11.495	2.7493	1				18703	5258	11627	11684	17957	17957					-0.021007073376267726
LGDKWRHQQ	9	Unmodified	_LGDKWRHQQ_					0	0	0			REV__DYNC2H1|p.Q716H|1|0.36|ENSG00000187240|chr11:103134362-103134362|G/T|missense_variant	REV__DYNC2H1|p.Q716H|1|0.36|ENSG00000187240|chr11:103134362-103134362|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	584.3046875	2	584.304521	1166.59449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.34	1	21.125	20.625	21.625	-0.2152								0	0	0	0.64498	1	7361	7361		21.747	4.6338	1		+		18704	10427	11628	11685	17958	17958					0.017855841718755983
LGDKWRQQQWL	11	Unmodified	_LGDKWRQQQWL_					0	0	0			REV__DYNC2H1|p.R713W|1|0.29|ENSG00000187240|chr11:103134351-103134351|C/T|missense_variant	REV__DYNC2H1|p.R713W|1|0.29|ENSG00000187240|chr11:103134351-103134351|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	729.3853149414062	2	729.386042	1456.75753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.846	1	30.482	29.982	30.982	-0.36416								0	0	0	0.94538	1	11171	11171		8.7454	3.8484	1		+		18705	10428	11629	11686	17959	17959					0.04742342503072905
LGDLLVQY	8	Unmodified	_LGDLLVQY_					0	0	0			REV__ENST00000484653.5_1_22:18083848-18102283:-|nuORF	REV__ENST00000484653.5_1_22:18083848-18102283:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	920.509033203125	1	920.50876	919.501483	0.54122	0.0004982	0.098308	9.0494E-05	0.63953	0.00058869	920.5086444924258	49.556	0.30505	49.392	49.228	49.534	-0.16369					9	5	2	0	0	0	0.10511	1	18978	18978		93.883	1.0613	1	49845000	+		18706	11956	11630	11687	17960	17960					0.038512666659471506
LGDLPFKPY	9	Unmodified	_LGDLPFKPY_					0	0	0		ENST00000562945.2_1_16:34429416-34429524:-|nuORF	ENST00000562945.2_1_16:34429416-34429524:-|nuORF	ENST00000562945.2_1_16:34429416-34429524:-|nuORF	MSMS	HCT116MG_D190212_S2	2	525.2882080078125	2	525.286943	1048.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.406	1	37.303	36.803	37.803	-0.10318								0	0	0	0.76641	1	14020	14020		13.508	0	1				18707	8831	11631	11688	17961	17961					0.03699528591369017
LGDLRACTYCR	11	Unmodified	_LGDLRACTYCR_					0	0	0		nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE	nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE	nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE	MULTI-MSMS	HCT116MG_D190212_S4	4	635.8048095703125	2	635.805182	1269.59581	0.59084	0.00037566	-0.78741	-0.00050064	-0.19657	-0.00012498	635.8046800589277	24.656	0.7268	24.388	24.134	24.861	-0.26881					24	13	2	0	0	0	0.72004	1	8781	8781		14.405	2.1647	1	3949200			18708	9431	11632	11689	17962	17962					-0.02820285845905346
LGDPGGHL	8	Unmodified	_LGDPGGHL_					0	0	0			REV__BAHCC1|p.G559Afs*75|1|0.28|ENSG00000266074|chr17:81443020-81443020|G/-|frameshift_variant	REV__BAHCC1|p.G559Afs*75|1|0.28|ENSG00000266074|chr17:81443020-81443020|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	383.19781494140625	2	383.198128	764.381703	-0.10485	-4.0179E-05	-0.10621	-4.0698E-05	-0.21106	-8.0877E-05	383.19798848095155	19.231	0.26037	18.862	18.68	18.94	-0.3695					7	4	2	0	0	0	0.5791	1	6669	6669		34.187	0	1	5232000	+		18709	10030	11633	11690	17963	17963					-0.009913018879615265
LGDQIGKP	8	Unmodified	_LGDQIGKP_					0	0	0		nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-6|KCNH2;nc|ENSG00000055118|Q12809-2|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF;ENST00000461280.1_1_7:150646989-150652738:-|nuORF	nc|ENSG00000055118|Q12809-5|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF	nc|ENSG00000055118|Q12809-5|KCNH2	MSMS	HCT116MG_D190212_S2	2	414.2346496582031	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.244	1	18.874	18.374	19.374	-0.3695								0	0	0	0.70483	1	6661	6661		30.225	7.0764	1				18710	1076;8052	11634	11691	17964	17964					0.03469826834657397
LGDQIGKP	8	Unmodified	_LGDQIGKP_					0	0	0		nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-6|KCNH2;nc|ENSG00000055118|Q12809-2|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF;ENST00000461280.1_1_7:150646989-150652738:-|nuORF	nc|ENSG00000055118|Q12809-5|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF	nc|ENSG00000055118|Q12809-5|KCNH2	MSMS	HCT116MG_D190212_S4	4	414.23455810546875	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.057	1	20.847	20.347	21.347	-0.20959								0	0	0	0.79325	1	7246	7246		23.148	1.4018	1				18711	1076;8052	11634	11691	17965	17965					0.03469826834657397
LGDQIGKP	8	Unmodified	_LGDQIGKP_					0	0	0		nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-6|KCNH2;nc|ENSG00000055118|Q12809-2|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF;ENST00000461280.1_1_7:150646989-150652738:-|nuORF	nc|ENSG00000055118|Q12809-5|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF	nc|ENSG00000055118|Q12809-5|KCNH2	MSMS	HCT116MG_D190212_S4	4	414.2330627441406	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.489	1	23.241	22.741	23.741	-0.24775								0	0	0	0.81076	1	8227	8227		21.747	2.3076	1				18712	1076;8052	11634	11691	17966	17966					0.03469826834657397
LGDRPGQLPA	10	Unmodified	_LGDRPGQLPA_					0	0	0		ENST00000544935.5_1_7:618956-635822:-|nuORF	ENST00000544935.5_1_7:618956-635822:-|nuORF	ENST00000544935.5_1_7:618956-635822:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	512.3023071289062	2	512.282723	1022.55089	0.32082	0.00016435	-0.34612	-0.00017731	-0.025302	-1.2962E-05	512.2823842870422	25.653	0.67639	25.363	24.943	25.62	-0.29023					23	12	2	0	0	0	0.69918	1	9168	9168		20.454	1.1966	1	5193000			18713	8713	11635	11692	17967	17967					0.040519746747463614
LGDSLEPHPGE	11	Unmodified	_LGDSLEPHPGE_					0	0	0		PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000418251.6_1_2:113931616-113943025:+|nuORF	PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant	PSD4|p.S676Lfs*16|1|0.12|ENSG00000125637|chr2:113193359-113193360|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	576.2740478515625	2	575.772385	1149.53022	0.39469	0.00022725	-0.26031	-0.00014988	0.13437	7.7368E-05	575.7720356524552	26.507	1.3511	26.206	25.869	27.221	-0.30087					60	25	3	0	0	0	0.65731	2	9412	9412;9818		29.082	12.932	1	6358400			18714	2896	11636	11693	17968;17969	17968					-0.03856660495557662
LGDVTEDPPVA	11	Unmodified	_LGDVTEDPPVA_					0	0	0			REV__MIDN|p.E54D|1|0.57|ENSG00000167470|chr19:1250458-1250458|G/C|missense_variant	REV__MIDN|p.E54D|1|0.57|ENSG00000167470|chr19:1250458-1250458|G/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	556.778564453125	2	556.777136	1111.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.512	1	31.142	30.642	31.642	-0.37026								0	0	0	0.93552	1	11440	11440		13.906	2.2658	1		+		18715	17029	11637	11694	17970	17970					-0.011588922100372656
LGEEPVAE	8	Unmodified	_LGEEPVAE_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18;REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MSMS	HCT116MG_D190212_S1	1	843.4100341796875	1	843.40944	842.402163	0.83984	0.00070833	-0.080401	-6.7811E-05	0.75944	0.00064052	843.4093683036879	25.793	0.366	25.793	25.614	25.98	0					14	6	3	0	0	0	0.09113	1	9296	9296		97.075	7.6479	1	14206000	+		18716	13703;17234	11638	11695	17971	17971					-0.025341760188098306
LGEKRLAPRE	10	Unmodified	_LGEKRLAPRE_					0	0	0			REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;REV__PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant;REV__PHF20L1|p.N322Mfs*42|5|0.3|ENSG00000129292|chr8:132814664-132814664|A/-|frameshift_variant	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	390.6180419921875	3	390.231412	1167.67241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.324	1	14.404	13.904	14.904	0.079683								0	0	0	0.96836	1	4602	4602		0.62683	0.17231	1		+		18717	11889;17412;17413	11639	11696	17972	17972					0.09527597037254054
LGELATIAVN	10	Unmodified	_LGELATIAVN_					0	0	0			REV__ENST00000514086.5_1_5:80550748-80553554:+|nuORF	REV__ENST00000514086.5_1_5:80550748-80553554:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1001.567626953125	1	1000.56734	999.560061	0.59529	0.00059563	-1.0874	-0.001088	-0.49212	-0.0004924	1000.5673907214775	57.546	0.25875	57.371	57.211	57.469	-0.17494					12	4	4	0	0	0	0.34998	1	22258	22258		46.021	4.1813	1	33535000	+		18718	11969	11640	11697	17973	17973					0.06026323240428155
LGELTTHKQMR	11	Unmodified	_LGELTTHKQMR_					0	0	0		ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	MSMS	HCT116MG_D190212_S2	2	657.3557739257812	2	657.353354	1312.69215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.088	1	31.858	31.358	32.358	-0.23009								0	0	0	0.93552	1	11861	11861		13.906	0.86358	1				18719	7822	11641	11698	17974	17974					0.04831604985679405
LGESGPPGPEG	11	Unmodified	_LGESGPPGPEG_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	HCT116MG_D190212_S4	4	498.7358703613281	2	498.735271	995.45599	0.56226	0.00028042	-0.20246	-0.00010097	0.35981	0.00017945	498.73534325456967	25.497	0.31214	25.218	25.11	25.422	-0.27958					8	5	2	0	0	0	0.60935	1	9100	9100		34.402	1.616	1	2805500	+		18720	10913	11642	11699	17975	17975					-0.041920035870930406
LGEVGSTLY	9	Unmodified	_LGEVGSTLY_					0	0	0		ENST00000524379.1_1_11:8248475-8284909:-|nuORF;nc|ENSG00000166407|P25800-2|LMO1;ENSG00000166407|ENST00000335790|LMO1;LMO3|p.R46H|1|0.58|ENSG00000048540|chr12:16600724-16600724|C/T|missense_variant;ENSG00000048540|ENST00000537304|LMO3;nc|ENSG00000048540|Q8TAP4-3|LMO3;nc|ENSG00000048540|Q8TAP4-4|LMO3	ENST00000524379.1_1_11:8248475-8284909:-|nuORF	ENST00000524379.1_1_11:8248475-8284909:-|nuORF	MSMS	HCT116MG_D190212_S2	2	469.7449035644531	2	469.745108	937.475663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.464	1	34.289	33.789	34.789	-0.17512								0	0	0	0.32721	1	12823	12823		38.151	4.0487	1				18721	4849	11643	11700	17976	17976					0.00442372423674442
LGEVTKEKA	9	Unmodified	_LGEVTKEKA_					0	0	0		tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	487.7796325683594	2	487.779482	973.544411	0.20411	9.9559E-05	0.055553	2.7098E-05	0.25966	0.00012666	487.77957496335915	20.589	0.21257	20.21	20.076	20.289	-0.37949					7	3	3	0	0	0	0.30117	1	7225	7225		30.637	3.0077	1	11384000			18722	18648	11644	11701	17977	17977					0.056580367233777906
LGFFRRKRRR	10	Unmodified	_LGFFRRKRRR_					0	0	0			REV__ENSG00000186479|ENST00000334025|RGS7BP	REV__ENSG00000186479|ENST00000334025|RGS7BP	MSMS	HCT116MG_D190212_S3	3	464.6268615722656	3	464.625089	1390.85344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.827	1	11.882	11.382	12.382	0.055045								0	0	0	0.96911	1	3648	3648		0.15932	0.064481	1		+		18723	13886	11645	11702	17978	17978					0.1736457992446958
LGFIGAGP	8	Unmodified	_LGFIGAGP_					0	0	0		ENST00000257261.10_1_11:61633560-61633647:+|nuORF	ENST00000257261.10_1_11:61633560-61633647:+|nuORF	ENST00000257261.10_1_11:61633560-61633647:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	366.2079772949219	2	366.207964	730.401375	-0.16633	-6.091E-05	0.1058	3.8745E-05	-0.060524	-2.2164E-05	366.2079191217116	31.172	0.93921	30.911	30.239	31.179	-0.26071					41	21	3	0	0	0	0.68942	1	11165	11165		24.21	0	1	8622500			18724	6824	11646	11703	17979	17979					0.025390741228079605
LGFIGAGP	8	Unmodified	_LGFIGAGP_					0	0	0		ENST00000257261.10_1_11:61633560-61633647:+|nuORF	ENST00000257261.10_1_11:61633560-61633647:+|nuORF	ENST00000257261.10_1_11:61633560-61633647:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	366.2077941894531	2	366.207964	730.401375	-0.06349	-2.325E-05	0.053572	1.9618E-05	-0.0099179	-3.632E-06	366.20784836962173	31.283	1.0431	30.913	30.188	31.231	-0.37026					47	25	3	0	0	0	0.68942	1	11385	11385		24.21	0	1	9943500			18725	6824	11646	11703	17980	17980					0.025390741228079605
LGFKDISLER	10	Unmodified	_LGFKDISLER_					0	0	0		nc|ENSG00000152578|P48058-2|GRIA4;GRIA4|p.M436Cfs*13|1|0.32|ENSG00000152578|chr11:105918746-105918746|A/-|frameshift_variant;ENSG00000152578|ENST00000282499|GRIA4	nc|ENSG00000152578|P48058-2|GRIA4	nc|ENSG00000152578|P48058-2|GRIA4	MSMS	HCT116MG_D190212_S2	2	589.3298950195312	2	589.332413	1176.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.483	1	52.295	51.795	52.795	-0.18725								0	0	0	0.91638	1	20162	20162		12.241	0.60036	1				18726	4156	11647	11704	17981	17981					0.06901372568859188
LGFPAAFLLL	10	Unmodified	_LGFPAAFLLL_					0	0	0			REV__ENST00000484214.1_1_1:156263748-156265436:-|nuORF	REV__ENST00000484214.1_1_1:156263748-156265436:-|nuORF	MSMS	HCT116MG_D190212_S2	2	531.3153686523438	2	531.323328	1060.6321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.2	1	56.017	55.517	56.517	-0.18261								0	0	0	0.88269	1	21681	21681		18.135	2.2878	1		+		18727	14142	11648	11705	17982	17982					0.10421282384800179
LGFPGPVG	8	Unmodified	_LGFPGPVG_					0	0	0		ENST00000417036.1_1_3:9404786-9405017:+|nuORF;ENST00000345094.7_1_3:9404786-9406727:+|nuORF	ENST00000417036.1_1_3:9404786-9405017:+|nuORF	ENST00000417036.1_1_3:9404786-9405017:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	743.4107666015625	1	743.408652	742.401375	0.49341	0.0003668	1.0189	0.00075748	1.5123	0.0011243	743.4096388989841	33.736	0.75984	33.446	33.011	33.771	-0.29013					18	14	2	0	0	0	0.8029	1	12417	12417		11.114	11.114	1	3463300			18728	7257	11649	11706	17983	17983					0.019870741228032784
LGFPGPVG	8	Unmodified	_LGFPGPVG_					0	0	0		ENST00000417036.1_1_3:9404786-9405017:+|nuORF;ENST00000345094.7_1_3:9404786-9406727:+|nuORF	ENST00000417036.1_1_3:9404786-9405017:+|nuORF	ENST00000417036.1_1_3:9404786-9405017:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	743.40966796875	1	743.408652	742.401375	1.0285	0.00076457	0.38026	0.00028269	1.4087	0.0010473	743.4090177274875	33.698	0.85337	33.314	32.976	33.829	-0.38426					23	18	2	0	0	0	0.8029	1	12275	12275		11.114	0	1	3169200			18729	7257	11649	11706	17984	17984					0.019870741228032784
LGGDQGVP	8	Unmodified	_LGGDQGVP_					0	0	0			REV__IL12RB1|p.Y481Lfs*8|1|0.07|ENSG00000096996|chr19:18066583-18066584|-/A|frameshift_variant	REV__IL12RB1|p.Y481Lfs*8|1|0.07|ENSG00000096996|chr19:18066583-18066584|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	371.6900329589844	2	371.690136	741.365718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.305	1	23.925	23.425	24.425	-0.38003								0	0	0	0.85589	1	8703	8703		18.135	0	1		+		18730	11039	11650	11707	17985	17985					-0.015310081248458118
LGGEEVGPLE	10	Unmodified	_LGGEEVGPLE_					0	0	0		ENST00000572253.5_1_17:78055494-78060128:+|nuORF;nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;CCDC40|p.I914Tfs*84|1|0.32|ENSG00000141519|chr17:80089792-80089793|-/C|frameshift_variant;nc|ENSG00000141519|Q4G0X9-2|CCDC40;CCDC40|p.K1058Nfs*21|1|0.06|ENSG00000141519|chr17:80097395-80097395|A/-|frameshift_variant;ENSG00000141519|ENST00000397545|CCDC40	ENST00000572253.5_1_17:78055494-78060128:+|nuORF	ENST00000572253.5_1_17:78055494-78060128:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	999.5001831054688	1	999.499317	998.492041	0.70502	0.00070467	0.33591	0.00033574	1.0409	0.0010404	999.4996430870078	32.598	0.20872	32.598	32.482	32.691	0					5	3	2	0	0	0	0.54141	1	12055	12055		32.305	4.6767	1	4687900			18731	352	11651	11708	17986	17986					-0.007265464102260921
LGGGAQARDVA	11	Unmodified	_LGGGAQARDVA_					0	0	0			REV__DHDH|p.A173G|1|0.18|ENSG00000104808|chr19:48939600-48939600|C/G|missense_variant	REV__DHDH|p.A173G|1|0.18|ENSG00000104808|chr19:48939600-48939600|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	507.7699279785156	2	507.76998	1013.52541	0.35793	0.00018174	-0.47832	-0.00024288	-0.1204	-6.1135E-05	507.76984530768254	20.483	0.31954	20.103	19.969	20.289	-0.37949					9	5	2	0	0	0	0.69028	1	7188	7188		25.399	0.40835	1	14984000	+		18732	10358	11652	11709	17987	17987					0.019185001523283063
LGGGCRLP	8	Unmodified	_LGGGCRLP_					0	0	0		ENST00000418034.1_2_1:11865779-11865944:-|nuORF	ENST00000418034.1_2_1:11865779-11865944:-|nuORF	ENST00000418034.1_2_1:11865779-11865944:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	387.1997985839844	2	386.710348	771.406143	0.017787	6.8784E-06	0.56584	0.00021882	0.58363	0.0002257	386.710295530588	26.796	1.3514	26.444	26.189	27.54	-0.35254					58	25	4	0	0	0	0.23191	1	9663	9663		34.187	2.0704	1	68775000			18733	7767	11653	11710	17988	17988					0.011296349939129868
LGGGCRLP	8	Unmodified	_LGGGCRLP_					0	0	0		ENST00000418034.1_2_1:11865779-11865944:-|nuORF	ENST00000418034.1_2_1:11865779-11865944:-|nuORF	ENST00000418034.1_2_1:11865779-11865944:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	387.1960754394531	2	386.710348	771.406143	0.018072	6.9886E-06	-0.02305	-8.9138E-06	-0.0049782	-1.9251E-06	386.7102255845882	26.534	0.93737	26.385	26.151	27.088	-0.14924					32	17	2	0	0	0	0.25037	1	9573	9573		28.173	0	1	5940400			18734	7767	11653	11710	17989	17989					0.011296349939129868
LGGKRKKG	8	Unmodified	_LGGKRKKG_					0	0	0		CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant;ENST00000572579.1_1_17:7796637-7797935:+|nuORF	CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	422.5227355957031	2	422.279786	842.54502	0.23381	9.8732E-05	0.42936	0.00018131	0.66317	0.00028004	422.27995280805465	23.917	0.20851	23.534	23.403	23.612	-0.38324					5	3	2	0	0	0	0.3238	1	8537	8537		5.7604	5.7604	1	9015500			18735	426	11654	11711	17990	17990					0.1174492095375399
LGGNCQTI	8	Unmodified	_LGGNCQTI_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant;ENSG00000121621|ENST00000263181|KIF18A;ENST00000531047.1_1_11:28106151-28106310:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MSMS	HCT116MG_D190212_S4	4	403.3064880371094	2	403.19727	804.379988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.01	1	32.628	32.128	33.128	-0.38223								0	0	0	0.8837	1	12046	12046		5.7604	0	1				18736	2736	11655	11712	17991	17991					-0.03002678968221062
LGGPPGGE	8	Unmodified	_LGGPPGGE_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENSG00000168071|ENST00000356786|CCDC88B	MULTI-MSMS	HCT116MG_D190212_S4	4	684.8087768554688	1	683.335881	682.328604	0.68912	0.0004709	-0.28038	-0.00019159	0.40874	0.00027931	683.3356959632222	19.759	0.61409	19.565	19.226	19.84	-0.19367					16	11	2	0	0	0	0.66848	1	6755	6755		26.341	0	1	2270100	+		18737	13185	11656	11713	17992	17992					-0.02526679670620524
LGGQKLAP	8	Unmodified	_LGGQKLAP_					0	0	0		ENST00000494249.5_1_9:140709863-140710166:+|nuORF	ENST00000494249.5_1_9:140709863-140710166:+|nuORF	ENST00000494249.5_1_9:140709863-140710166:+|nuORF	MSMS	HCT116MG_D190212_S3	3	392.2389221191406	2	392.239796	782.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.713	1	25.585	25.085	26.085	-0.12795								0	0	0	0.8837	1	9192	9192		6.3541	0	1				18738	8369	11657	11714	17993	17993					0.0651043455989111
LGGRPWAGVE	10	Unmodified	_LGGRPWAGVE_					0	0	0			REV__ENST00000553437.1_1_14:91808648-91875041:-|nuORF	REV__ENST00000553437.1_1_14:91808648-91875041:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	521.7989501953125	2	521.277441	1040.54033	0.60246	0.00031405	-1.5687	-0.0008177	-0.9662	-0.00050366	521.2763374256066	34.532	0.25758	34.356	34.227	34.485	-0.17512					6	4	2	0	0	0	0.27462	1	12868	12868		13.042	0	1	16683000	+		18739	16436	11658	11715	17994	17994					0.02167992020326892
LGGRWDPYWGF	11	Unmodified	_LGGRWDPYWGF_					0	0	0		ENST00000478241.6_2_12:56224362-56224512:+|nuORF	ENST00000478241.6_2_12:56224362-56224512:+|nuORF	ENST00000478241.6_2_12:56224362-56224512:+|nuORF	MSMS	HCT116MG_D190212_S1	1	451.8843688964844	3	451.884012	1352.63021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0998	1	2.0998	1.5998	2.5998	0								0	0	0	0.96208	1	626	626		0	0	1				18740	8219	11659	11716	17995	17995					-0.03200378371138868
LGGSGPPA	8	Unmodified	_LGGSGPPA_					0	0	0			REV__ENST00000343348.10_1_5:115910495-115910576:-|nuORF	REV__ENST00000343348.10_1_5:115910495-115910576:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	655.789794921875	1	655.340966	654.33369	0.77895	0.00051048	-0.022632	-1.4831E-05	0.75632	0.00049565	655.3407850920955	26.438	1.5623	26.289	25.213	26.775	-0.14924					56	29	3	0	0	0	0.21411	1	9561	9561		70.865	3.8292	1	26055000	+		18741	14994	11660	11717	17996	17996					-0.007303758080070111
LGGSICCDTE	10	Unmodified	_LGGSICCDTE_					0	0	0			REV__GBA2|p.N61Ifs*13|1|0.17|ENSG00000070610|chr9:35748523-35748524|-/A|frameshift_variant	REV__GBA2|p.N61Ifs*13|1|0.17|ENSG00000070610|chr9:35748523-35748524|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	499.20068359375	2	499.201892	996.389232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.504	1	52.316	51.816	52.816	-0.18725								0	0	0	0.85468	1	20171	20171		21.747	0	1		+		18742	16845	11661	11718	17997	17997					-0.10910698464863344
LGGSQPRVE	9	Unmodified	_LGGSQPRVE_					0	0	0		ENST00000506326.1_1_3:134085404-134085665:-|nuORF	ENST00000506326.1_1_3:134085404-134085665:-|nuORF	ENST00000506326.1_1_3:134085404-134085665:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	471.7541198730469	2	471.753798	941.493044	0.24173	0.00011404	0.067782	3.1977E-05	0.30951	0.00014601	471.75390222310483	36.846	0.361	36.731	36.602	36.963	-0.11478					8	6	2	0	0	0	0.47829	1	13874	13874		18.135	2.2878	1	26175000			18743	8462	11662	11719	17998	17998					0.019957127493285043
LGGSYGSG	8	Unmodified	_LGGSYGSG_					0	0	0			REV__ENST00000504435.1_1_4:882633-887812:-|nuORF	REV__ENST00000504435.1_1_4:882633-887812:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	697.3150024414062	1	697.315145	696.307869	0.72831	0.00050786	0.49706	0.00034661	1.2254	0.00085447	697.3152889424774	26.787	0.26071	26.787	26.657	26.918	0					6	4	2	0	0	0	0.86564	1	9700	9700		2.5775	0	1	6859200	+		18744	13616	11663	11720	17999	17999					-0.052432700502663465
LGGVKSKS	8	Unmodified	_LGGVKSKS_					0	0	0		ENST00000481865.5_1_3:195596955-195610258:-|nuORF	ENST00000481865.5_1_3:195596955-195610258:-|nuORF	ENST00000481865.5_1_3:195596955-195610258:-|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2363586425781	2	388.237253	774.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.612	1	41.31	40.81	41.81	-0.30257								0	0	0	0.8837	1	15479	15479		0.79363	0	1				18745	8256	11664	11721	18000	18000					0.06370130697280274
LGGVQAQR	8	Unmodified	_LGGVQAQR_					0	0	0		LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.A2665Cfs*4|1|0.15|ENSG00000196569|chr6:129491988-129491989|-/G|frameshift_variant;LAMA2|p.G15R|1|0.13|ENSG00000196569|chr6:128883288-128883288|G/A|missense_variant;LAMA2|p.V377Cfs*4|1|0.28|ENSG00000196569|chr6:129154599-129154600|-/G|frameshift_variant;LAMA2|p.K682Efs*22|1|0.32|ENSG00000196569|chr6:129252243-129252244|AA/-|frameshift_variant;LAMA2|p.K1124Nfs*15|2|0.34|ENSG00000196569|chr6:129313053-129313053|A/-|frameshift_variant;LAMA2|p.N1765Mfs*26|1|0.4|ENSG00000196569|chr6:129393101-129393101|A/-|frameshift_variant;LAMA2|p.V2281Cfs*12|1|0.36|ENSG00000196569|chr6:129456464-129456465|-/T|frameshift_variant	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	414.7384338378906	2	414.737951	827.46135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.892	1	54.575	54.075	55.075	-0.31774								0	0	0	0.8837	1	20538	20538		0.79363	0	1				18746	6086	11665	11722	18001	18001					0.04071764786033327
LGHAAGLY	8	Unmodified	_LGHAAGLY_					0	0	0			REV__ENSG00000147036|ENST00000378619|LANCL3	REV__ENSG00000147036|ENST00000378619|LANCL3	MULTI-MSMS	HCT116MG_D190212_S1	1	401.21575927734375	2	401.216321	800.418088	-0.080772	-3.2407E-05	-0.34007	-0.00013644	-0.42084	-0.00016885	401.2160031364227	23.758	0.20938	23.758	23.627	23.837	0					5	3	2	0	0	0	0.75115	1	8505	8505		17.087	0	1	5470700	+		18747	12503	11666	11723	18002	18002					0.009895750087594024
LGHAFNPEY	9	Unmodified	_LGHAFNPEY_					0	0	0			REV__nc|ENSG00000125149|Q9BSU1-2|PHAF1	REV__nc|ENSG00000125149|Q9BSU1-2|PHAF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	524.2885131835938	2	524.248349	1046.48214	0.34765	0.00018225	-0.82074	-0.00043027	-0.47309	-0.00024802	524.247877732473	20.429	0.26585	20.05	19.917	20.183	-0.37949					6	4	2	0	0	0	0.24195	1	7166	7166		18.135	4.2289	1	3522600	+		18748	11804	11667	11724	18003	18003					-0.0392368962495766
LGHGELAEHFY	11	Unmodified	_LGHGELAEHFY_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000502350.5_1_4:8234964-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MSMS	HCT116MG_D190212_S3	3	425.0740661621094	3	424.871772	1271.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.137	1	11.184	10.684	11.684	0.04739								0	0	0	0.95925	1	3405	3405		0.50596	0	1				18749	2872	11668	11725	18004	18004					-0.03144674987674989
LGHGQPEAR	9	Unmodified	_LGHGQPEAR_					0	0	0		nc|ENSG00000061273|Q8WUI4-10|HDAC7;HDAC7|p.M769Wfs*12|1|0.42|ENSG00000061273|chr12:47787744-47787744|G/-|frameshift_variant;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7	nc|ENSG00000061273|Q8WUI4-10|HDAC7	nc|ENSG00000061273|Q8WUI4-10|HDAC7	MSMS	HCT116MG_D190212_S2	2	482.7530212402344	2	482.75159	963.488627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.835	1	55.649	55.149	56.149	-0.18565								0	0	0	0.74436	1	21531	21531		16.942	2.3606	1				18750	1115	11669	11726	18005	18005					0.0054224832641693865
LGHMQPRIVL	10	Unmodified	_LGHMQPRIVL_					0	0	0		nc|ENSG00000205726|Q15811-5|ITSN1	nc|ENSG00000205726|Q15811-5|ITSN1	nc|ENSG00000205726|Q15811-5|ITSN1	MSMS	HCT116MG_D190212_S1	1	582.3408813476562	2	582.339518	1162.66448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.143	1	48.143	47.643	48.643	0								0	0	0	0.94107	1	18310	18310		6.7232	0.96273	1				18751	9614	11670	11727	18006	18006					0.0896574651615083
LGHPFFYRRH	10	Unmodified	_LGHPFFYRRH_					0	0	0		ENSG00000168229|ENST00000306051|PTGDR;nc|ENSG00000168229|Q13258-2|PTGDR	ENSG00000168229|ENST00000306051|PTGDR	ENSG00000168229|ENST00000306051|PTGDR	MSMS	HCT116MG_D190212_S1	1	665.351318359375	2	665.351806	1328.68906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.832	1	61.832	61.332	62.332	0								0	0	0	0.96911	1	23865	23865		0.45834	0	1				18752	4991	11671	11728	18007	18007					0.03786142713852314
LGHSLLGP	8	Unmodified	_LGHSLLGP_					0	0	0			REV__nc|ENSG00000149930|Q9UL54-3|TAOK2	REV__nc|ENSG00000149930|Q9UL54-3|TAOK2	MSMS	HCT116MG_D190212_S1	1	397.23309326171875	2	397.231971	792.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.598	1	17.598	17.098	18.098	0								0	0	0	0.8837	1	5999	5999		6.3541	0	1		+		18753	12577	11672	11729	18008	18008					0.04486148042849436
LGHVTFGG	8	Unmodified	_LGHVTFGG_					0	0	0		ENST00000474199.5_1_19:48800235-48800805:-|nuORF;ENST00000497273.1_1_19:48800235-48801266:-|nuORF;nc|ENSG00000105479|Q96M63-4|ODAD1;nc|ENSG00000105479|Q96M63|ODAD1;ENSG00000105479|ENST00000674294|ODAD1	ENST00000474199.5_1_19:48800235-48800805:-|nuORF	ENST00000474199.5_1_19:48800235-48800805:-|nuORF	MSMS	HCT116MG_D190212_S4	4	394.2082824707031	2	394.208495	786.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.501	1	29.151	28.651	29.651	-0.34921								0	0	0	0.8837	1	10656	10656		6.3541	0	1				18754	2011	11673	11730	18009	18009					0.0006928849171572438
LGIKHGLDII	10	Unmodified	_LGIKHGLDII_					0	0	0			REV__tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1	REV__tr|U7SNU7|U7SNU7_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01953PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	360.2254638671875	3	360.225486	1077.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.213	1	38.12	37.62	38.62	-0.09301								0	0	0	0.92272	1	14349	14349		9.544	1.935	1		+		18755	17741	11674	11731	18010	18010					0.11890881782437646
LGILAIFFGT	10	Unmodified	_LGILAIFFGT_					0	0	0			REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	526.5112915039062	2	526.312961	1050.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.234	1	37.131	36.631	37.631	-0.10318								0	0	0	0.77279	1	13950	13950		32.305	13.049	1		+		18756	17783	11675	11732	18011	18011					0.08808692005163721
LGIVATTGV	9	Unmodified	_LGIVATTGV_					0	0	0		ATP2A1|p.K572Efs*9|1|0.32|ENSG00000196296|chr16:28898392-28898393|-/C|frameshift_variant;ATP2A1|p.P571Rfs*21|2|0.37|ENSG00000196296|chr16:28898393-28898393|C/-|frameshift_variant;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1	ATP2A1|p.K572Efs*9|1|0.32|ENSG00000196296|chr16:28898392-28898393|-/C|frameshift_variant	ATP2A1|p.K572Efs*9|1|0.32|ENSG00000196296|chr16:28898392-28898393|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	830.4990234375	1	830.498195	829.490919	0.74379	0.00061772	0.2851	0.00023678	1.0289	0.00085449	830.4983728946004	51.626	0.30415	51.626	51.451	51.756	0					11	5	3	0	0	0	0.02256	1	19732	19732		93.883	0	1	66176000			18757	224	11676	11733	18012	18012					0.06935284011524345
LGIVLFFTLIR	11	Unmodified	_LGIVLFFTLIR_					0	0	0		ENST00000438300.1_1_2:133070568-133076306:+|nuORF	ENST00000438300.1_1_2:133070568-133076306:+|nuORF	ENST00000438300.1_1_2:133070568-133076306:+|nuORF	MSMS	HCT116MG_D190212_S4	4	646.40869140625	2	646.410466	1290.80638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.521	1	59.244	58.744	59.744	-0.27731								0	0	0	0.9598	1	22400	22400		1.1933	0.66858	1				18758	7896	11677	11734	18013	18013					0.17260862810144317
LGIWFIPQ	8	Unmodified	_LGIWFIPQ_					0	0	0			REV__nc|ENSG00000150093|P05556-2|ITGB1	REV__nc|ENSG00000150093|P05556-2|ITGB1	MULTI-SECPEP	HCT116MG_D190212_S2	2	486.77734375	2	487.278921	972.543289	0.14513	7.072E-05	-0.46397	-0.00022608	-0.31884	-0.00015536	487.27851058095644	23.533	0.20734	23.149	22.988	23.195	-0.38324					5	3	2	0	0	0	0.31507	1	8401	8401		5.2307	0	1	5447300	+		18759	12579	11678	11735	18014	18014					0.0559186714514226
LGKATARGR	9	Unmodified	_LGKATARGR_					0	0	0		ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	465.2856140136719	2	465.2856	928.556647	0.25815	0.00012011	-0.040877	-1.902E-05	0.21727	0.00010109	465.28548664014977	48.816	1.267	48.672	48.338	49.605	-0.1437					64	24	4	0	0	0	0.61923	1	18872	18872		10.074	3.8681	1	1792499999.9999998			18760	7815	11679	11736	18015	18015					0.08951117977085232
LGKATARGR	9	Unmodified	_LGKATARGR_					0	0	0		ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	465.2856	928.556647	0.0039858	1.8545E-06	0.1971	9.1709E-05	0.20109	9.3564E-05	465.2856939863761	48.383	1.961	48.383	47.841	49.802	0	-0.1447	0.00020421	NaN	10.074	77	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4724100000			18761	7815	11679	11736							0.08951117977085232
LGKKMKQA	8	Unmodified	_LGKKMKQA_					0	0	0		PHAX|p.V329G|1|0.35|ENSG00000164902|chr5:126624645-126624645|T/G|missense_variant;ENSG00000164902|ENST00000297540|PHAX	PHAX|p.V329G|1|0.35|ENSG00000164902|chr5:126624645-126624645|T/G|missense_variant	PHAX|p.V329G|1|0.35|ENSG00000164902|chr5:126624645-126624645|T/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	452.2774963378906	2	452.275855	902.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.912	1	42.537	42.037	43.037	-0.37493								0	0	0	0.8837	1	15789	15789		2.3027	0	1				18762	4730	11680	11737	18016	18016					0.08199025641965818
LGKKRKKK	8	Unmodified	_LGKKRKKK_					0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MSMS	HCT116MG_D190212_S3	3	493.35333251953125	2	493.353286	984.692019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.546	1	13.621	13.121	14.121	0.074899								0	0	0	0.8837	1	4303	4303		0.79363	0	1		+		18763	14403	11681	11738	18017	18017					0.1990601783869579
LGKLRQWAANV	11	Unmodified	_LGKLRQWAANV_					0	0	0			REV__SPTAN1|p.T595Lfs*44|1|0.28|ENSG00000197694|chr9:128582823-128582823|A/-|frameshift_variant	REV__SPTAN1|p.T595Lfs*44|1|0.28|ENSG00000197694|chr9:128582823-128582823|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	628.3677368164062	2	628.367121	1254.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.5	1	40.121	39.621	40.621	-0.37828								0	0	0	0.93717	1	14860	14860		13.042	3.6593	1		+		18764	14086	11682	11739	18018	18018					0.10251876308257124
LGKMRVVG	8	Unmodified	_LGKMRVVG_					0	0	0			REV__nc|ENSG00000185332|Q8N8V8|TMEM105	REV__nc|ENSG00000185332|Q8N8V8|TMEM105	MSMS	HCT116MG_D190212_S1	1	430.2640380859375	2	430.262748	858.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.105	1	30.105	29.605	30.605	0								0	0	0	0.8837	1	11029	11029		2.3027	0	1		+		18765	17246	11683	11740	18019	18019					0.07602756470498662
LGKMRVVG	8	Unmodified	_LGKMRVVG_					0	0	0			REV__nc|ENSG00000185332|Q8N8V8|TMEM105	REV__nc|ENSG00000185332|Q8N8V8|TMEM105	MSMS	HCT116MG_D190212_S3	3	430.2646484375	2	430.262748	858.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.479	1	42.175	41.675	42.675	-0.30352								0	0	0	0.8837	1	15825	15825		2.3027	0	1		+		18766	17246	11683	11740	18020	18020					0.07602756470498662
LGKMRVVG	8	Unmodified	_LGKMRVVG_					0	0	0			REV__nc|ENSG00000185332|Q8N8V8|TMEM105	REV__nc|ENSG00000185332|Q8N8V8|TMEM105	MSMS	HCT116MG_D190212_S4	4	430.2647705078125	2	430.262748	858.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.947	1	40.57	40.07	41.07	-0.37732								0	0	0	0.8837	1	15041	15041		2.3027	0	1		+		18767	17246	11683	11740	18021	18021					0.07602756470498662
LGKMRVVG	8	Unmodified	_LGKMRVVG_					0	0	0			REV__nc|ENSG00000185332|Q8N8V8|TMEM105	REV__nc|ENSG00000185332|Q8N8V8|TMEM105	MSMS	HCT116MG_D190212_S4	4	430.2646484375	2	430.262748	858.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.618	1	42.242	41.742	42.742	-0.37545								0	0	0	0.8837	1	15670	15670		2.3027	0	1		+		18768	17246	11683	11740	18022	18022					0.07602756470498662
LGKQLETRL	9	Unmodified	_LGKQLETRL_					0	0	0		nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1;ENST00000341807.8_1_8:139601498-139734429:-|nuORF	nc|ENSG00000169436|Q8NFW1-3|COL22A1	nc|ENSG00000169436|Q8NFW1-3|COL22A1	MSMS	HCT116MG_D190212_S4	4	353.2164001464844	3	353.216991	1056.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.484	1	30.12	29.62	30.62	-0.36416								0	0	0	0.76991	1	11041	11041		1.1933	0	1				18769	5074	11684	11741	18023	18023					0.10309407260001535
LGKQRART	8	Unmodified	_LGKQRART_					0	0	0			REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	465.2855529785156	2	465.2856	928.556647	0.0039858	1.8545E-06	0.1971	9.1709E-05	0.20109	9.3564E-05	465.2856939863761	48.383	1.961	48.383	47.841	49.802	0					77	37	5	0	0	0	0.85571	1	18494	18494		4.3292	0	1	4724100000	+		18770	15212	11685	11742	18024	18024					0.08951117977085232
LGKQRART	8	Unmodified	_LGKQRART_					0	0	0			REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	465.77764892578125	2	465.2856	928.556647	0.012119	5.6386E-06	-0.16093	-7.4878E-05	-0.14881	-6.924E-05	465.28553559843743	51.014	0.67206	51.014	50.574	51.246	0					16	12	2	0	0	0	0.33503	1	19501	19501		1.8442	0	1	14827000	+		18771	15212	11685	11742	18025	18025					0.08951117977085232
LGKQRART	8	Unmodified	_LGKQRART_					0	0	0			REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	465.2856750488281	2	465.2856	928.556647	0.25893	0.00012048	-0.13342	-6.208E-05	0.12551	5.8396E-05	465.2854597138626	49.369	1.9354	49.053	48.552	50.488	-0.31596					78	36	4	0	0	0	0.85571	1	18611	18611		4.3292	0	1	362490000	+		18772	15212	11685	11742	18026	18026					0.08951117977085232
LGKQRART	8	Unmodified	_LGKQRART_					0	0	0			REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	465.2853698730469	2	465.2856	928.556647	-0.17879	-8.3187E-05	0.10238	4.7636E-05	-0.076407	-3.5551E-05	465.2855696459765	49.312	1.9162	48.947	48.494	50.41	-0.36482					107	40	5	0	0	0	0.85571	2	18186	18186;18428		4.3292	0	1	675780000	+		18773	15212	11685	11742	18027;18028	18027					0.08951117977085232
LGKQRART	8	Unmodified	_LGKQRART_					0	0	0			REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	465.2856	928.556647	0.28625	0.00013319	-0.20872	-9.7116E-05	0.077531	3.6074E-05	465.28546821616777	51.235	0.83756	50.924	50.492	51.33	-0.31166	-0.044977	-2.0881E-05	NaN	1.8442	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3566300	+		18774	15212	11685	11742							0.08951117977085232
LGLIWVIILRF	11	Unmodified	_LGLIWVIILRF_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant;SPTBN5|p.R482Afs*7|1|0.21|ENSG00000137877|chr15:41885811-41885812|-/C|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MSMS	HCT116MG_D190212_S3	3	672.2343139648438	2	671.934109	1341.85366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.768	1	46.454	45.954	46.954	-0.31405								0	0	0	0.9593	1	17545	17545		3.5965	1.3137	1				18775	3513	11686	11743	18029	18029					0.1964114208110459
LGLKRRRWH	9	Unmodified	_LGLKRRRWH_					0	0	0			REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	MSMS	HCT116MG_D190212_S3	3	407.91998291015625	3	407.919502	1220.73668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.256	1	12.319	11.819	12.819	0.06246								0	0	0	0.77008	1	3809	3809		0.26902	0	1		+		18776	15934	11687	11744	18030	18030					0.13513841704730112
LGLKRRRWH	9	Unmodified	_LGLKRRRWH_					0	0	0			REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	MSMS	HCT116MG_D190212_S3	3	407.9200134277344	3	407.919502	1220.73668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.718	1	12.781	12.281	13.281	0.06246								0	0	0	0.77008	1	3988	3988		0.26902	0	1		+		18777	15934	11687	11744	18031	18031					0.13513841704730112
LGLKRRRWH	9	Unmodified	_LGLKRRRWH_					0	0	0			REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	MSMS	HCT116MG_D190212_S3	3	408.1775817871094	3	407.919502	1220.73668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.169	1	13.238	12.738	13.738	0.069158								0	0	0	0.77008	1	4160	4160		0.26902	0	1		+		18778	15934	11687	11744	18032	18032					0.13513841704730112
LGLKRRRWH	9	Unmodified	_LGLKRRRWH_					0	0	0			REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	MSMS	HCT116MG_D190212_S3	3	407.92022705078125	3	407.919502	1220.73668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.263	1	13.332	12.832	13.832	0.069158								0	0	0	0.77008	1	4195	4195		0.26902	0	1		+		18779	15934	11687	11744	18033	18033					0.13513841704730112
LGLKRRRWH	9	Unmodified	_LGLKRRRWH_					0	0	0			REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	MSMS	HCT116MG_D190212_S3	3	407.9205322265625	3	407.919502	1220.73668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.907	1	13.982	13.482	14.482	0.074899								0	0	0	0.77008	1	4442	4442		0.26902	0	1		+		18780	15934	11687	11744	18034	18034					0.13513841704730112
LGLLIYKWWKR	11	Unmodified	_LGLLIYKWWKR_					0	0	0			REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	MULTI-MSMS	HCT116MG_D190212_S1	1	492.6348876953125	3	492.634368	1474.88128	0.37722	0.00018583	0.48966	0.00024122	0.86689	0.00042706	492.6345044920839	52.596	0.93297	52.596	51.861	52.794	0					53	17	4	0	0	0	0.74191	1	19905	19905		0.45452	0.046251	1	134460000	+		18781	11404	11688	11745	18035	18035					0.1628304534133349
LGLLRLCLAQ	10	Unmodified	_LGLLRLCLAQ_					0	0	0		nc|ENSG00000148600|Q96JP9-2|CDHR1;ENSG00000148600|ENST00000623527|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-SECPEP	HCT116MG_D190212_S3	3	549.835205078125	2	550.336444	1098.65834	0.56072	0.00030858	0.12244	6.7381E-05	0.68315	0.00037596	550.3364841882135	29.554	0.31297	29.318	29.135	29.448	-0.23655					8	5	2	0	0	0	0.28496	1	10748	10748		13.906	0	1	10761000			18782	4028	11689	11746	18036	18036					0.11295228284598124
LGLPPHIRK	9	Unmodified	_LGLPPHIRK_					0	0	0		ENST00000529500.1_1_11:47447261-47447800:-|nuORF	ENST00000529500.1_1_11:47447261-47447800:-|nuORF	ENST00000529500.1_1_11:47447261-47447800:-|nuORF	MSMS	HCT116MG_D190212_S4	4	515.830322265625	2	515.829643	1029.64473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.509	1	12.34	11.84	12.84	-0.16903								0	0	0	0.76967	1	3888	3888		2.0598	0	1				18783	8607	11690	11747	18037	18037					0.1310973856768669
LGLQEWASL	9	Unmodified	_LGLQEWASL_					0	0	0			REV__ENSG00000175877|ENST00000320531|TMEM270	REV__ENSG00000175877|ENST00000320531|TMEM270	MSMS	HCT116MG_D190212_S1	1	508.7723388671875	2	508.7742	1015.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.544	1	39.544	39.044	40.044	0								0	0	0	0.05792	1	14837	14837		68.081	5.508	1		+		18784	13531	11691	11748	18038	18038					0.02670054068948957
LGLRFVRRGRR	11	Unmodified	_LGLRFVRRGRR_					0	0	0			REV__ENST00000566339.5_1_16:1828300-1828461:-|nuORF	REV__ENST00000566339.5_1_16:1828300-1828461:-|nuORF	MSMS	HCT116MG_D190212_S3	3	462.4838562011719	3	462.628611	1384.864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.862	1	13.937	13.437	14.437	0.074899								0	0	0	0.9619	1	4424	4424		0.094841	0	1		+		18785	16543	11692	11749	18039	18039					0.18696562578907105
LGLSRKRVDWL	11	Unmodified	_LGLSRKRVDWL_					0	0	0			REV__nc|ENSG00000143164|Q58WW2|DCAF6	REV__nc|ENSG00000143164|Q58WW2|DCAF6	MSMS	HCT116MG_D190212_S1	1	671.9029541015625	2	671.901328	1341.7881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.082	1	56.082	55.582	56.582	0								0	0	0	0.95581	1	21552	21552		3.2813	0.28607	1		+		18786	12377	11693	11750	18040	18040					0.1308812088814193
LGLVNWRLI	9	Unmodified	_LGLVNWRLI_					0	0	0			REV__ENST00000534279.1_1_1:154558555-154560745:-|nuORF	REV__ENST00000534279.1_1_1:154558555-154560745:-|nuORF	MSMS	HCT116MG_D190212_S1	1	542.3355102539062	2	542.337301	1082.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.923	1	45.923	45.423	46.423	0								0	0	0	0.3563	1	17410	17410		36.044	4.7759	1		+		18787	12840	11694	11751	18041	18041					0.12202605364905139
LGLVPPLVKVI	11	Unmodified	_LGLVPPLVKVI_					0	0	0			REV__ENSG00000182782|ENST00000328880|HCAR2	REV__ENSG00000182782|ENST00000328880|HCAR2	MSMS	HCT116MG_D190212_S2	2	383.2651062011719	3	383.265282	1146.77402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.128	1	30.861	30.361	31.361	-0.26704								0	0	0	0.96111	1	11471	11471		0.50596	0	1		+		18788	13727	11695	11752	18042	18042					0.20650075407138502
LGLYDERLLSY	11	Unmodified	_LGLYDERLLSY_					0	0	0		tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	671.3566284179688	2	671.356085	1340.69762	0.87872	0.00058993	-0.0061996	-4.1622E-06	0.87252	0.00058577	671.3562936919994	55.506	0.16406	55.214	55.136	55.3	-0.2918					6	2	3	0	0	0	0.71532	1	21086	21086		16.149	8.5402	1	6006800			18789	18520	11696	11753	18043	18043					0.04089607049195365
LGLYDERLLSY	11	Unmodified	_LGLYDERLLSY_					0	0	0		tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	tr|U7SYW7|U7SYW7_FUSNURibonucleoside-diphosphatereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00841PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	671.3566284179688	2	671.356085	1340.69762	0.78987	0.00053028	0.52426	0.00035196	1.3141	0.00088225	671.3561187949321	55.532	0.15611	55.22	55.142	55.298	-0.312					4	2	2	0	0	0	0.69138	1	20819	20819		24.991	9.7425	1	9914900			18790	18520	11696	11753	18044	18044					0.04089607049195365
LGMAAATAGPS	11	Unmodified	_LGMAAATAGPS_					0	0	0			REV__AHDC1|p.T223M|1|0.28|ENSG00000126705|chr1:27551448-27551448|G/A|missense_variant	REV__AHDC1|p.T223M|1|0.28|ENSG00000126705|chr1:27551448-27551448|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	473.73583984375	2	473.73676	945.458967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.8	1	37.498	36.998	37.998	-0.30137								0	0	0	0.82946	1	13988	13988		29.082	0.59474	1		+		18791	9897	11697	11754	18045	18045					-0.015944517339335107
LGMYFSYFLVM	11	Unmodified	_LGMYFSYFLVM_					0	0	0		ENST00000243997.7_1_20:57601245-57601359:-|nuORF	ENST00000243997.7_1_20:57601245-57601359:-|nuORF	ENST00000243997.7_1_20:57601245-57601359:-|nuORF	MSMS	HCT116MG_D190212_S4	4	685.8281860351562	2	685.829803	1369.64505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.079	1	19.886	19.386	20.386	-0.19367								0	0	0	0.95023	1	6851	6851		6.2058	0.9089	1				18792	6783	11698	11755	18046	18046					-0.024983906096395003
LGNEDVAFDVD	11	Unmodified	_LGNEDVAFDVD_					0	0	0			REV__nc|ENSG00000162745|Q68BL8-2|OLFML2B	REV__nc|ENSG00000162745|Q68BL8-2|OLFML2B	MSMS	HCT116MG_D190212_S4	4	398.515625	3	398.515542	1192.5248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.984	1	25.693	25.193	26.193	-0.29022								0	0	0	0.95196	1	9235	9235		2.4348	0	1		+		18793	12895	11699	11756	18047	18047					-0.06376384078043884
LGNETEHGQP	10	Unmodified	_LGNETEHGQP_					0	0	0		ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	542.2744750976562	2	541.249077	1080.4836	0.34616	0.00018736	0.076075	4.1175E-05	0.42224	0.00022853	541.2490814990679	16.704	1.5085	16.789	15.82	17.329	0.084467					66	28	4	0	0	0	0.40515	1	5658	5658		41.84	13.345	1	38180000			18794	43	11700	11757	18048	18048					-0.0534210032685678
LGNETEHGQP	10	Unmodified	_LGNETEHGQP_					0	0	0		ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	541.249267578125	2	541.249077	1080.4836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.82	1	17.645	17.145	18.145	-0.17501								0	0	0	0.68912	1	5939	5939		38.176	11.907	1				18795	43	11700	11757	18049	18049					-0.0534210032685678
LGNETEHGQP	10	Unmodified	_LGNETEHGQP_					0	0	0		ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	541.2484741210938	2	541.249077	1080.4836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.135	1	17.96	17.46	18.46	-0.17501								0	0	0	0.76907	1	6066	6066		32.786	3.7041	1				18796	43	11700	11757	18050	18050					-0.0534210032685678
LGNETEHGQPG	11	Unmodified	_LGNETEHGQPG_					0	0	0		ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	ADAMTS10|p.R226H|1|0.82|ENSG00000142303|chr19:8601061-8601061|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	569.7603149414062	2	569.759809	1137.50507	0.28523	0.00016251	0.12687	7.2287E-05	0.4121	0.0002348	569.759847854667	17.78	1.5537	17.605	16.599	18.153	-0.17501					65	29	3	0	0	0	0.61797	1	6034	6034		33.445	9.6438	1	10223000			18797	43	11701	11758	18051	18051					-0.05818715298141797
LGNFAEDPIS	10	Unmodified	_LGNFAEDPIS_					0	0	0			REV__nc|ENSG00000106823|O94769-2|ECM2	REV__nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	HCT116MG_D190212_S2	2	531.2775268554688	2	531.758746	1061.50294	0.61756	0.00032839	1.3072	0.00069514	1.9248	0.0010235	531.7593549396759	43.837	0.25767	43.759	43.607	43.865	-0.078373					6	4	2	0	0	0	0.29442	1	16573	16573		10.074	5.7447	1	15639000	+		18798	11312	11702	11759	18052	18052					-0.02535144035960002
LGNFVAGK	8	Unmodified	_LGNFVAGK_					0	0	0		ENST00000505973.1_1_2:27821100-27852768:+|nuORF;nc|ENSG00000243943|Q96ME7-2|ZNF512;nc|ENSG00000243943|Q96ME7-3|ZNF512;ENSG00000243943|ENST00000355467|ZNF512	ENST00000505973.1_1_2:27821100-27852768:+|nuORF	ENST00000505973.1_1_2:27821100-27852768:+|nuORF	MSMS	HCT116MG_D190212_S4	4	403.1793518066406	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.473	1	12.304	11.804	12.804	-0.16903								0	0	0	0.8837	1	3875	3875		2.5775	0	1				18799	6561	11703	11760	18053	18053					0.039341480428561226
LGNGNGLG	8	Unmodified	_LGNGNGLG_					0	0	0			REV__ENSG00000262152|ENST00000573315|GREP1	REV__ENSG00000262152|ENST00000573315|GREP1	MULTI-MSMS	HCT116MG_D190212_S2	2	351.1824645996094	2	351.182478	700.350402	-0.56378	-0.00019799	0.47224	0.00016584	-0.091535	-3.2146E-05	351.1825749580473	18.658	0.57325	18.295	17.851	18.425	-0.36325					15	10	2	0	0	0	0.50777	1	6421	6421		40.449	8.3316	1	8728000	+		18800	14423	11704	11761	18054	18054					-0.01175874922046205
LGNGNGLG	8	Unmodified	_LGNGNGLG_					0	0	0			REV__ENSG00000262152|ENST00000573315|GREP1	REV__ENSG00000262152|ENST00000573315|GREP1	MULTI-MSMS	HCT116MG_D190212_S2	2	701.3578491210938	1	701.357679	700.350402	0.35379	0.00024813	0.099364	6.969E-05	0.45316	0.00031782	701.3577656420962	18.649	0.57325	18.286	17.851	18.425	-0.36325					14	10	2	0	0	0	0.5791	1	6439	6439		34.187	0	1	9683700	+		18801	14423	11704	11761	18055	18055					-0.01175874922046205
LGNMSQSS	8	Unmodified	_LGNMSQSS_					0	0	0			REV__nc|ENSG00000144230|Q13304|GPR17	REV__nc|ENSG00000144230|Q13304|GPR17	MSMS	HCT116MG_D190212_S3	3	411.8072204589844	2	412.18436	822.354167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.461	1	12.524	12.024	13.024	0.06246								0	0	0	0.8837	1	3887	3887		2.3027	0.24298	1		+		18802	15996	11705	11762	18056	18056					-0.0641157321049377
LGNSFTTFFIA	11	Unmodified	_LGNSFTTFFIA_					0	0	0		ENST00000474926.5_1_1:114243464-114243515:-|nuORF	ENST00000474926.5_1_1:114243464-114243515:-|nuORF	ENST00000474926.5_1_1:114243464-114243515:-|nuORF	MSMS	HCT116MG_D190212_S4	4	609.3121948242188	2	609.313689	1216.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.785	1	36.4	35.9	36.9	-0.38486								0	0	0	0.94012	1	13475	13475		11.495	1.4208	1				18803	8194	11706	11763	18057	18057					0.01318281303247204
LGPCHFCP	8	Unmodified	_LGPCHFCP_					0	0	0		ENST00000044462.11_1_15:78841375-78841534:+|nuORF	ENST00000044462.11_1_15:78841375-78841534:+|nuORF	ENST00000044462.11_1_15:78841375-78841534:+|nuORF	MSMS	HCT116MG_D190212_S3	3	437.191162109375	2	437.190934	872.367315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.57	1	13.644	13.144	14.144	0.074899								0	0	0	0.8837	1	4312	4312		0.79363	0	1				18804	6712	11707	11764	18058	18058					-0.07397413632111238
LGPCKFALVCV	11	Unmodified	_LGPCKFALVCV_					0	0	0			REV__nc|ENSG00000145743|Q9UF56-3|FBXL17	REV__nc|ENSG00000145743|Q9UF56-3|FBXL17	MULTI-SECPEP	HCT116MG_D190212_S2	2	575.3223876953125	2	575.31158	1148.60861	0.27149	0.00015619	-0.68959	-0.00039673	-0.4181	-0.00024054	575.3110329577785	38.761	0.42046	38.677	38.437	38.857	-0.084618					9	7	2	0	0	0	0.35307	1	14494	14494		9.3831	0	1	34518000	+		18805	12460	11708	11765	18059	18059					0.04024777284303127
LGPCRWNNPW	10	Unmodified	_LGPCRWNNPW_					0	0	0			REV__ENST00000269097.8_1_17:42152369-42153074:+|nuORF	REV__ENST00000269097.8_1_17:42152369-42153074:+|nuORF	MSMS	HCT116MG_D190212_S4	4	414.866455078125	3	414.866075	1241.5764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.088	1	12.923	12.423	13.423	-0.16496								0	0	0	0.96291	1	4092	4092		0.77653	0.32202	1		+		18806	14689	11709	11766	18060	18060					-0.03472874074464016
LGPDLPPG	8	Unmodified	_LGPDLPPG_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MSMS	HCT116MG_D190212_S1	1	383.20953369140625	2	383.210704	764.406855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.649	1	54.649	54.149	55.149	0								0	0	0	0.8837	1	20963	20963		5.7604	0	1				18807	8390	11710	11767	18061	18061					0.015227529146045526
LGPGAGPR	8	Unmodified	_LGPGAGPR_					0	0	0		NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant	NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	362.7086181640625	2	362.708663	723.402772	0.0028669	1.0399E-06	-0.0058743	-2.1307E-06	-0.0030073	-1.0908E-06	362.70854465820054	20.476	1.0389	20.274	19.885	20.923	-0.20133					22	19	2	0	0	0	0.15838	1	6996	6996		81.864	7.4677	1	11348000			18808	1149	11711	11768	18062	18062					0.030007082115730555
LGPHYHQWLG	10	Unmodified	_LGPHYHQWLG_					0	0	0			REV__MINPP1|p.V265Sfs*11|1|0.35|ENSG00000107789|chr10:87508483-87508484|-/A|frameshift_variant	REV__MINPP1|p.V265Sfs*11|1|0.35|ENSG00000107789|chr10:87508483-87508484|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	604.3335571289062	2	604.30399	1206.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.963	1	16.963	16.463	17.463	0								0	0	0	0.95351	1	5744	5744		3.9444	0	1		+		18809	11325	11712	11769	18063	18063					-0.001606301970241475
LGPLQVAYRET	11	Unmodified	_LGPLQVAYRET_					0	0	0		nc|ENSG00000164347|Q969S9-2|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	nc|ENSG00000164347|Q969S9-2|GFM2	MSMS	HCT116MG_D190212_S3	3	624.2364501953125	2	623.843145	1245.67174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.888	1	12.958	12.458	13.458	0.069158								0	0	0	0.95925	1	4053	4053		1.4819	0.15237	1				18810	4693	11713	11770	18064	18064					0.0587275759755812
LGPLRHRR	8	Unmodified	_LGPLRHRR_					0	0	0		ENST00000398882.7_2_8:144648386-144648569:-|nuORF	ENST00000398882.7_2_8:144648386-144648569:-|nuORF	ENST00000398882.7_2_8:144648386-144648569:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	504.31964111328125	2	502.814859	1003.61517	0.30541	0.00015357	-1.0104	-0.00050805	-0.70501	-0.00035449	502.8142540324768	51.678	1.1873	51.678	51.451	52.639	0					46	22	4	0	0	0	0.86388	1	19845	19845		2.8892	0	1	1023599999.9999999			18811	7687	11714	11771	18065	18065					0.11350219342216405
LGPNGRVSYSI	11	Unmodified	_LGPNGRVSYSI_					0	0	0		nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1;ENSG00000254221|ENST00000523390|PCDHGB1	nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1	nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1	MULTI-MSMS	HCT116MG_D190212_S2	2	581.8141479492188	2	581.814387	1161.61422	0.49337	0.00028705	0.086225	5.0167E-05	0.57959	0.00033722	581.814407646221	29.144	0.92198	28.828	28.352	29.274	-0.31613					50	17	4	0	0	0	0.72373	1	10557	10557		13.042	0.80181	1	131000000			18812	6595	11715	11772	18066	18066					0.039879153919855526
LGPQGGGLPA	10	Unmodified	_LGPQGGGLPA_					0	0	0		KCNK5|p.D373Gfs*3|1|0.07|ENSG00000164626|chr6:39191274-39191275|-/TCCA|frameshift_variant;ENSG00000164626|ENST00000359534|KCNK5	KCNK5|p.D373Gfs*3|1|0.07|ENSG00000164626|chr6:39191274-39191275|-/TCCA|frameshift_variant	KCNK5|p.D373Gfs*3|1|0.07|ENSG00000164626|chr6:39191274-39191275|-/TCCA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	866.473876953125	1	866.473043	865.465767	0.71641	0.00062075	0.030996	2.6857E-05	0.74741	0.00064761	866.4729948065298	28.474	0.31167	28.142	28.012	28.324	-0.33138					9	5	2	0	0	0	0.20843	1	10242	10242		58.679	10.333	1	5162100			18813	4709	11716	11773	18067	18067					0.0276522920894422
LGPRQMPQ	8	Unmodified	_LGPRQMPQ_					0	0	0		ENST00000376062.6_1_20:30252428-30253052:-|nuORF	ENST00000376062.6_1_20:30252428-30253052:-|nuORF	ENST00000376062.6_1_20:30252428-30253052:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	463.24627685546875	2	463.747462	925.480371	0.1506	6.9842E-05	0.70724	0.00032798	0.85785	0.00039782	463.7478611193143	18.376	0.20835	18.376	18.246	18.454	0					5	3	2	0	0	0	0.31507	1	6316	6316		9.3474	0	1	3085300			18814	7513	11717	11774	18068	18068					0.014649780854483652
LGPSFWCRSQE	11	Unmodified	_LGPSFWCRSQE_					0	0	0		ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	MSMS	HCT116MG_D190212_S4	4	655.3042602539062	2	655.303329	1308.59211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.627	1	20.426	19.926	20.926	-0.20133								0	0	0	0.94012	1	7073	7073		11.495	2.1116	1				18815	5508	11718	11775	18069	18069					-0.04984632348055129
LGPSGPSG	8	Unmodified	_LGPSGPSG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	671.3364868164062	1	671.335881	670.328604	0.79766	0.0005355	-0.29403	-0.00019739	0.50363	0.00033811	671.335640552813	19.032	0.52007	19.102	18.823	19.343	0.069159					15	9	2	0	0	0	0.09113	1	6475	6475		97.075	7.6479	1	8318800	+		18816	13219	11719	11776	18070	18070					-0.019746796706044734
LGPSGPSG	8	Unmodified	_LGPSGPSG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S4	4	671.3364868164062	1	671.335881	670.328604	0.62419	0.00041904	0.30539	0.00020502	0.92958	0.00062406	671.3358865885918	19.186	0.41583	18.999	18.765	19.181	-0.18674					12	7	2	0	0	0	0.09113	1	6478	6478		97.075	7.6479	1	4911500	+		18817	13219	11719	11776	18071	18071					-0.019746796706044734
LGPSGPSG	8	Unmodified	_LGPSGPSG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	671.335881	670.328604	0.79766	0.0005355	-0.29403	-0.00019739	0.50363	0.00033811	671.335640552813	19.032	0.52007	19.102	18.823	19.343	0.069159	0.051291	-9.9831E-05	NaN	97.075	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8318800	+		18818	13219	11719	11776							-0.019746796706044734
LGPSGPSG	8	Unmodified	_LGPSGPSG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	671.335881	670.328604	0.62419	0.00041904	0.30539	0.00020502	0.92958	0.00062406	671.3358865885918	19.186	0.41583	18.999	18.765	19.181	-0.18674	-0.051291	0.00030258	NaN	97.075	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4911500	+		18819	13219	11719	11776							-0.019746796706044734
LGPSSVELFFK	11	Unmodified	_LGPSSVELFFK_					0	0	0			REV__tr|U7T3Y5|U7T3Y5_FUSNURibosomematurationfactorRimPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimPPE=3SV=1	REV__tr|U7T3Y5|U7T3Y5_FUSNURibosomematurationfactorRimPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimPPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	612.3356323242188	2	612.337164	1222.65977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.822	1	34.436	33.936	34.936	-0.38606								0	0	0	0.91433	1	12730	12730		18.146	1.0335	1		+		18820	17961	11720	11777	18072	18072					0.05735140854358178
LGPVGSAG	8	Unmodified	_LGPVGSAG_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;PARP10|p.N936Qfs*6|1|0.45|ENSG00000178685|chr8:143977756-143977757|-/G|frameshift_variant	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	HCT116MG_D190212_S3	3	657.3557739257812	1	657.356616	656.34934	0.56225	0.0003696	-0.29086	-0.0001912	0.27139	0.0001784	657.3564299821088	32.232	0.72857	31.954	31.474	32.202	-0.27841					14	13	2	0	0	0	0.76257	1	11799	11799		15.768	0	1	5521000			18821	5509	11721	11778	18073	18073					0.00741910709041349
LGQLIIRLLPA	11	Unmodified	_LGQLIIRLLPA_					0	0	0		ENST00000572426.5_1_17:3937307-3974023:-|nuORF;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1	ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENST00000572426.5_1_17:3937307-3974023:-|nuORF	MSMS	HCT116MG_D190212_S2	2	603.9010620117188	2	603.900266	1205.78598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.285	1	22.899	22.399	23.399	-0.3852								0	0	0	0.95925	1	8291	8291		1.4819	0.15237	1				18822	1301	11722	11779	18074	18074					0.19131692150335766
LGQPFNPPQ	9	Unmodified	_LGQPFNPPQ_					0	0	0			REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF	REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MSMS	HCT116MG_D190212_S3	3	499.25726318359375	2	499.258717	996.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.52	1	22.501	22.001	23.001	-0.018869								0	0	0	0.56943	1	7905	7905		25.399	0.40835	1		+		18823	12873	11723	11780	18075	18075					0.0044890075471357704
LGQPPVIFRTG	11	Unmodified	_LGQPPVIFRTG_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MSMS	HCT116MG_D190212_S1	1	395.56292724609375	3	395.564391	1183.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.531	1	25.531	25.031	26.031	0								0	0	0	0.9478	1	9188	9188		7.4771	3.0709	1		+		18824	13759	11724	11781	18076	18076					0.08685382668363673
LGQQQGSA	8	Unmodified	_LGQQQGSA_					0	0	0			REV__YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	REV__YME1L1|p.N311Tfs*18|1|0.26|ENSG00000136758|chr10:27134053-27134053|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	394.6984558105469	2	394.698492	787.382431	0.071221	2.8111E-05	-0.21091	-8.3245E-05	-0.13969	-5.5134E-05	394.69841088211643	17.144	0.46845	16.795	16.457	16.925	-0.34933					12	8	2	0	0	0	0.6854	1	5835	5835		24.674	0	1	4603600	+		18825	18062	11725	11782	18077	18077					-0.019765072388963745
LGRAEDLHLL	10	Unmodified	_LGRAEDLHLL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;SYNE1|p.A3854Lfs*20|1|0.4|ENSG00000131018|chr6:152352048-152352048|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-4|SYNE1;SYNE1|p.V8635Sfs*12|1|0.15|ENSG00000131018|chr6:152133375-152133375|T/-|frameshift_variant;SYNE1|p.L8283Pfs*8|1|0.19|ENSG00000131018|chr6:152148173-152148174|-/G|frameshift_variant;SYNE1|p.K6871Rfs*22|2|0.52|ENSG00000131018|chr6:152233881-152233881|T/-|frameshift_variant;SYNE1|p.G6773Wfs*7|1|0.44|ENSG00000131018|chr6:152236186-152236187|-/A|frameshift_variant;SYNE1|p.E5862Gfs*83|1|0.12|ENSG00000131018|chr6:152300729-152300738|CCAGACTCCT/-|frameshift_variant;SYNE1|p.M5602Nfs*13|2|0.32|ENSG00000131018|chr6:152310779-152310780|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.E4738Kfs*25|1|0.12|ENSG00000131018|chr6:152330474-152330474|T/-|frameshift_variant;SYNE1|p.K3606Sfs*5|1|0.25|ENSG00000131018|chr6:152354768-152354768|T/-|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;SYNE1|p.M2832Nfs*53|1|0.25|ENSG00000131018|chr6:152385831-152385832|-/T|frameshift_variant;SYNE1|p.I2756*|1|0.12|ENSG00000131018|chr6:152387293-152387293|T/-|frameshift_variant;SYNE1|p.N2333Kfs*2|1|0.32|ENSG00000131018|chr6:152401168-152401169|-/T|frameshift_variant;SYNE1|p.S2126Pfs*10|1|0.33|ENSG00000131018|chr6:152409564-152409564|A/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	HCT116MG_D190212_S2	2	568.8247680664062	2	568.824755	1135.63496	0.70081	0.00039864	-0.16587	-9.435E-05	0.53494	0.00030429	568.8244632762115	43.609	0.36082	43.536	43.303	43.664	-0.073376					10	6	2	0	0	0	0.26742	1	16566	16566		53.404	7.7044	1	25198000			18826	3120	11726	11783	18078	18078					0.07256505771670163
LGRAEVALG	9	Unmodified	_LGRAEVALG_					0	0	0		ENSG00000244486|ENST00000622235|SCARF2;nc|ENSG00000244486|Q96GP6|SCARF2	ENSG00000244486|ENST00000622235|SCARF2	ENSG00000244486|ENST00000622235|SCARF2	MULTI-MSMS	HCT116MG_D190212_S3	3	443.26141357421875	2	443.261259	884.507966	0.23919	0.00010602	-0.14034	-6.2206E-05	0.098855	4.3819E-05	443.2611565600192	29.138	0.31225	28.916	28.733	29.046	-0.22195					9	5	2	0	0	0	0.14972	1	10578	10578		48.346	6.2513	1	8989300			18827	6566	11727	11784	18079	18079					0.061092046173257586
LGRCYYWIQT	10	Unmodified	_LGRCYYWIQT_					0	0	0			REV__nc|ENSG00000080200|Q68DQ2-2|CRYBG3	REV__nc|ENSG00000080200|Q68DQ2-2|CRYBG3	MSMS	HCT116MG_D190212_S3	3	434.88232421875	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.19	1	13.259	12.759	13.759	0.069158								0	0	0	0.96911	1	4168	4168		0.15932	0	1		+		18828	10857	11728	11785	18080	18080					-0.01606853963062349
LGRCYYWIQT	10	Unmodified	_LGRCYYWIQT_					0	0	0			REV__nc|ENSG00000080200|Q68DQ2-2|CRYBG3	REV__nc|ENSG00000080200|Q68DQ2-2|CRYBG3	MSMS	HCT116MG_D190212_S4	4	434.88226318359375	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.997	1	13.835	13.335	14.335	-0.16233								0	0	0	0.96911	1	4413	4413		0.15932	0.064481	1		+		18829	10857	11728	11785	18081	18081					-0.01606853963062349
LGRKKKRRK	9	Unmodified	_LGRKKKRRK_					0	0	0		ENSG00000128602|ENST00000249373|SMO;SMO|p.P694Lfs*82|6|0.3|ENSG00000128602|chr7:129212163-129212163|C/-|frameshift_variant	ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	MSMS	HCT116MG_D190212_S1	1	585.4077758789062	2	585.406915	1168.79928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.578	1	25.578	25.078	26.078	0								0	0	0	0.7696	1	9207	9207		2.3027	0	1				18830	3002	11729	11786	18082	18082					0.22162987772912857
LGRKVFRKWV	10	Unmodified	_LGRKVFRKWV_					0	0	0		ENST00000405546.7_1_2:242612072-242612480:+|nuORF	ENST00000405546.7_1_2:242612072-242612480:+|nuORF	ENST00000405546.7_1_2:242612072-242612480:+|nuORF	MSMS	HCT116MG_D190212_S4	4	644.9041137695312	2	644.903674	1287.7928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.32	1	12.151	11.651	12.651	-0.16903								0	0	0	0.96911	1	3819	3819		0.45834	0	1				18831	7711	11730	11787	18083	18083					0.1604104982154695
LGRMVRSP	8	Unmodified	_LGRMVRSP_					0	0	0		ENST00000527516.5_3_11:8832877-8892921:-|nuORF;ENST00000533471.5_1_11:8832827-8892921:-|nuORF	ENST00000527516.5_3_11:8832877-8892921:-|nuORF	ENST00000527516.5_3_11:8832877-8892921:-|nuORF	MSMS	HCT116MG_D190212_S1	1	458.26123046875	2	458.263279	914.512005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.19	1	27.19	26.69	27.69	0								0	0	0	0.75335	1	9856	9856		26.341	10.573	1				18832	8597	11731	11788	18084	18084					0.05132970839395057
LGRRLLLLL	9	Unmodified	_LGRRLLLLL_					0	0	0		SLC2A5|p.F349L|1|0.33|ENSG00000142583|chr1:9038881-9038881|A/G|missense_variant;SLC2A5|p.G416Afs*13|1|0.29|ENSG00000142583|chr1:9037952-9037952|C/-|frameshift_variant;ENSG00000142583|ENST00000377424|SLC2A5	SLC2A5|p.F349L|1|0.33|ENSG00000142583|chr1:9038881-9038881|A/G|missense_variant	SLC2A5|p.F349L|1|0.33|ENSG00000142583|chr1:9038881-9038881|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	356.2541198730469	3	356.253488	1065.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.183	1	34.797	34.297	35.297	-0.38606								0	0	0	0.77018	1	12876	12876		0.26902	0	1				18833	3765	11732	11789	18085	18085					0.20839457669990225
LGRRSRRRR	9	Unmodified	_LGRRSRRRR_					0	0	0		ENST00000366641.3_1_1:231557623-231557677:-|nuORF	ENST00000366641.3_1_1:231557623-231557677:-|nuORF	ENST00000366641.3_1_1:231557623-231557677:-|nuORF	MSMS	HCT116MG_D190212_S3	3	404.9242248535156	3	404.925539	1211.75479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.372	1	12.434	11.934	12.934	0.06246								0	0	0	0.77018	1	3853	3853		0.26902	0	1				18834	7373	11733	11790	18086	18086					0.15737976679452004
LGRSKVFIK	9	Unmodified	_LGRSKVFIK_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;MYO1E|p.A680T|1|0.24|ENSG00000157483|chr15:59178404-59178404|C/T|missense_variant	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	HCT116MG_D190212_S1	1	524.8391723632812	2	524.337301	1046.66005	0.4664	0.00024455	-0.092927	-4.8725E-05	0.37347	0.00019583	524.8387319747118	33.426	0.25977	33.426	33.296	33.556	0					6	4	2	0	0	0	0.21258	1	12399	12399		39.95	5.8473	1	8319600			18835	4329	11734	11791	18087	18087					0.1385860536488508
LGSAFHGAP	9	Unmodified	_LGSAFHGAP_					0	0	0		ENST00000585075.1_1_17:73268124-73268835:+|nuORF	ENST00000585075.1_1_17:73268124-73268835:+|nuORF	ENST00000585075.1_1_17:73268124-73268835:+|nuORF	MSMS	HCT116MG_D190212_S2	2	428.7171630859375	2	428.719227	855.423902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.175	1	11.886	11.386	12.386	-0.28953								0	0	0	0.768	1	3969	3969		7.9102	0	1				18836	8984	11735	11792	18088	18088					-0.009593264795739742
LGSALHTLGE	10	Unmodified	_LGSALHTLGE_					0	0	0			REV__NLRC5|p.A1512T|1|0.35|ENSG00000140853|chr16:57069870-57069870|G/A|missense_variant	REV__NLRC5|p.A1512T|1|0.35|ENSG00000140853|chr16:57069870-57069870|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	499.27001953125	2	499.269281	996.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.759	1	25.469	24.969	25.969	-0.29022								0	0	0	0.87399	1	9144	9144		19.257	3.4098	1		+		18837	17349	11736	11793	18089	18089					0.025608660635725755
LGSERANLHR	10	Unmodified	_LGSERANLHR_					0	0	0			REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF	REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	576.8153686523438	2	576.815253	1151.61595	0.41628	0.00024012	0.083822	4.835E-05	0.50011	0.00028847	576.8151086847023	16.082	0.20849	16.082	15.952	16.161	0					5	3	2	0	0	0	0.87945	1	5418	5418		3.5965	0.31518	1	3711600	+		18838	16310	11737	11794	18090	18090					0.04620969200595937
LGSFNEAP	8	Unmodified	_LGSFNEAP_					0	0	0			REV__nc|ENSG00000143437|P27540-4|ARNT	REV__nc|ENSG00000143437|P27540-4|ARNT	MSMS	HCT116MG_D190212_S2	2	417.70159912109375	2	417.703243	833.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.366	1	24.991	24.491	25.491	-0.37521								0	0	0	0.77419	1	9132	9132		24.674	1.5255	1		+		18839	17153	11738	11795	18091	18091					-0.03142738953386015
LGSGLVGL	8	Unmodified	_LGSGLVGL_					0	0	0			REV__ENST00000265056.11_2_3:127340622-127340844:+|nuORF	REV__ENST00000265056.11_2_3:127340622-127340844:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	715.435546875	1	715.434867	714.42759	1.2843	0.00091883	-0.38352	-0.00027439	0.90077	0.00064444	715.434407741934	43.609	0.46339	43.536	43.355	43.818	-0.073376					13	8	2	0	0	0	0.1757	1	16525	16525		78.445	0	1	177220000	+		18840	14671	11739	11796	18092	18092					0.0589534329427579
LGSGLVGL	8	Unmodified	_LGSGLVGL_					0	0	0			REV__ENST00000265056.11_2_3:127340622-127340844:+|nuORF	REV__ENST00000265056.11_2_3:127340622-127340844:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	715.4354248046875	1	715.434867	714.42759	0.7149	0.00051146	0.093678	6.702E-05	0.80858	0.00057848	715.4346636334743	43.869	0.46934	43.562	43.344	43.813	-0.30616					17	8	3	0	0	0	0.1757	1	16371	16371		78.445	0	1	26256000	+		18841	14671	11739	11796	18093	18093					0.0589534329427579
LGSHGAWLPP	10	Unmodified	_LGSHGAWLPP_					0	0	0		ENST00000514283.1_1_5:180220053-180230825:-|nuORF	ENST00000514283.1_1_5:180220053-180230825:-|nuORF	ENST00000514283.1_1_5:180220053-180230825:-|nuORF	MSMS	HCT116MG_D190212_S2	2	517.7744140625	2	517.774534	1033.53451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.196	1	21.811	21.311	22.311	-0.38518								0	0	0	0.89194	1	7851	7851		16.942	1.0951	1				18842	8518	11740	11797	18094	18094					0.01908893508652909
LGSKFWDSN	9	Unmodified	_LGSKFWDSN_					0	0	0		ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant;nc|ENSG00000108846|O15438-2|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-3|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	ABCC3|p.L968Afs*31|1|0.33|ENSG00000108846|chr17:50675920-50675921|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	527.2340698242188	2	527.253631	1052.49271	0.54446	0.00028707	-2.996	-0.0015796	-2.4515	-0.0012926	527.2522314123008	17.646	0.3125	17.646	17.516	17.828	0					6	5	2	0	0	0	0.063511	2	5991	5991;6027		68.081	25.986	1	3746100			18843	9	11741	11798	18095;18096	18095					-0.031437069705361864
LGSLEPSAKP	10	Unmodified	_LGSLEPSAKP_					0	0	0		PCDHGA6|p.D674N|1|0.38|ENSG00000253731|chr5:141376103-141376103|G/A|missense_variant;PCDHGA6|p.F770Sfs*23|1|0.29|ENSG00000253731|chr5:141376389-141376389|T/-|frameshift_variant;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;PCDHGA1|p.Q772Sfs*79|1|0.05|ENSG00000204956|chr5:141332994-141332994|C/-|frameshift_variant;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000253731|ENST00000517434|PCDHGA6	PCDHGA6|p.D674N|1|0.38|ENSG00000253731|chr5:141376103-141376103|G/A|missense_variant	PCDHGA6|p.D674N|1|0.38|ENSG00000253731|chr5:141376103-141376103|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	499.7792663574219	2	499.779482	997.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.926	1	19.551	19.051	20.051	-0.37503								0	0	0	0.7978	1	6937	6937		29.082	0.59474	1				18844	6359	11742	11799	18097	18097					0.04554036723379795
LGSLGDAL	8	Unmodified	_LGSLGDAL_					0	0	0			REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407	REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MSMS	HCT116MG_D190212_S2	2	373.2080993652344	2	373.208161	744.401769	-0.11686	-4.3613E-05	0.072064	2.6895E-05	-0.044795	-1.6718E-05	373.20812735365223	29.807	0.25847	29.506	29.34	29.599	-0.30095					6	4	2	0	0	0	0.50777	1	10949	10949		40.449	2.2974	1	14583000	+		18845	14284	11743	11800	18098	18098					0.019344490519983992
LGSLSGFYGL	10	Unmodified	_LGSLSGFYGL_					0	0	0			REV__ENST00000308660.5_1_5:126205755-126205914:-|nuORF	REV__ENST00000308660.5_1_5:126205755-126205914:-|nuORF	MSMS	HCT116MG_D190212_S3	3	507.2700500488281	2	507.26875	1012.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.189	1	48.873	48.373	49.373	-0.31596								0	0	0	0.90023	1	18517	18517		15.847	0	1		+		18846	14824	11744	11801	18099	18099					0.017186516946708252
LGSMLEKAQ	9	Unmodified	_LGSMLEKAQ_					0	0	0			REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-SECPEP	HCT116MG_D190212_S1	1	488.7608337402344	2	488.760235	975.505917	0.22735	0.00011112	0.15106	7.3832E-05	0.37841	0.00018495	488.7602789091413	18.584	0.2083	18.584	18.454	18.662	0					5	3	2	0	0	0	0.24622	1	6411	6411		3.9444	0	1	3358400	+		18847	11631	11745	11802	18100	18100					0.01718407817213574
LGSPGSPGA	9	Unmodified	_LGSPGSPGA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S2	2	742.3733520507812	1	742.372995	741.365718	1.1556	0.0008579	-0.26594	-0.00019743	0.88967	0.00066047	742.372738712813	22.358	0.51854	21.973	21.739	22.258	-0.3852					11	9	2	0	0	0	0.057285	1	7924	7924		71.134	3.0529	1	31589000	+		18848	13018	11746	11803	18101	18101					-0.015310081248571805
LGSPGSPGA	9	Unmodified	_LGSPGSPGA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	742.3726196289062	1	742.372995	741.365718	0.8643	0.00064163	0.031806	2.3612E-05	0.8961	0.00066524	742.3728645481572	21.413	0.88284	21.195	20.802	21.685	-0.21832					33	16	3	0	0	0	0.24895	1	7587	7587		36.127	1.9397	1	51564000	+		18849	13018	11746	11803	18102	18102					-0.015310081248571805
LGSPGSPGA	9	Unmodified	_LGSPGSPGA_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	742.372995	741.365718	1.1556	0.0008579	-0.26594	-0.00019743	0.88967	0.00066047	742.372738712813	22.358	0.51854	21.973	21.739	22.258	-0.3852	-0.058143	-0.00011482	NaN	71.134	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31589000	+		18850	13018	11746	11803							-0.015310081248571805
LGSQCQHEA	9	Unmodified	_LGSQCQHEA_					0	0	0			REV__nc|ENSG00000235718|Q9BY79-2|MFRP	REV__nc|ENSG00000235718|Q9BY79-2|MFRP	MULTI-SECPEP	HCT116MG_D190212_S1	1	486.79010009765625	2	486.713816	971.413079	0.23974	0.00011669	0.67917	0.00033056	0.91891	0.00044725	486.7140559066411	22.888	0.26025	22.888	22.741	23.001	0					7	4	2	0	0	0	0.25347	1	8079	8079		10.074	0.6908	1	4955300	+		18851	14333	11747	11804	18103	18103					-0.07377096916172832
LGSSLDKEMM	10	Unmodified	_LGSSLDKEMM_					0	0	0			REV__TTF2|p.K619Rfs*10|1|0.36|ENSG00000116830|chr1:117081896-117081896|A/-|frameshift_variant	REV__TTF2|p.K619Rfs*10|1|0.36|ENSG00000116830|chr1:117081896-117081896|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	555.2813110351562	2	555.762117	1109.50968	0.43588	0.00024225	0.41606	0.00023123	0.85194	0.00047348	555.7629362921069	22.838	0.1566	22.838	22.741	22.898	0					4	2	2	0	0	0	0.28233	1	8109	8109		21.537	2.28	1	2241700	+		18852	18025	11748	11805	18104	18104					-0.040692904712386735
LGSSRNHF	8	Unmodified	_LGSSRNHF_					0	0	0			REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF	REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	459.2800598144531	2	459.233033	916.451513	0.17881	8.2113E-05	-0.24453	-0.00011229	-0.06572	-3.0181E-05	459.23302354491847	39.369	0.17281	38.989	38.884	39.057	-0.38055					5	3	2	0	0	0	0.32917	1	14449	14449		2.8892	0	1	2777900	+		18853	14216	11749	11806	18105	18105					-0.010054232193397183
LGSVVSPKD	9	Unmodified	_LGSVVSPKD_					0	0	0			REV__nc|ENSG00000164530|Q6UXB8-2|PI16	REV__nc|ENSG00000164530|Q6UXB8-2|PI16	MULTI-SECPEP	HCT116MG_D190212_S1	1	451.32745361328125	2	451.2531	900.491647	-0.062231	-2.8082E-05	0.41753	0.00018841	0.3553	0.00016033	451.2532226197248	32.092	0.2085	32.092	31.961	32.17	0					5	3	2	0	0	0	0.24195	1	11801	11801		4.3292	0	1	3874400	+		18854	13010	11750	11807	18106	18106					0.03742078660570769
LGTGELRLS	9	Unmodified	_LGTGELRLS_					0	0	0		ENST00000314134.3_1_11:45826465-45826639:+|nuORF	ENST00000314134.3_1_11:45826465-45826639:+|nuORF	ENST00000314134.3_1_11:45826465-45826639:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	473.27203369140625	2	473.271824	944.529095	0.30735	0.00014546	0.0073558	3.4813E-06	0.3147	0.00014894	473.27181071743234	38.005	0.23367	37.704	37.6	37.833	-0.30137					9	6	2	0	0	0	0.32162	1	14055	14055		28.487	0	1	12270000			18855	7078	11751	11808	18107	18107					0.05461169926195453
LGTGRHGLLAA	11	Unmodified	_LGTGRHGLLAA_					0	0	0			REV__ENST00000415647.1_1_1:180919596-180919698:-|nuORF	REV__ENST00000415647.1_1_1:180919596-180919698:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.7673950195312	2	533.311815	1064.60908	0.3815	0.00020346	-0.089294	-4.7622E-05	0.2922	0.00015584	533.3117382604892	21.37	0.25865	20.987	20.859	21.117	-0.38288					8	4	3	0	0	0	0.29121	1	7514	7514		34.932	0	1	27621000	+		18856	15470	11752	11809	18108	18108					0.07935656320046292
LGTHLPWDEQW	11	Unmodified	_LGTHLPWDEQW_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	691.3295288085938	2	691.330402	1380.64625	0.80919	0.00055942	-1.5726	-0.0010872	-0.76345	-0.00052779	691.3289241234913	28.282	0.5738	28.076	27.759	28.333	-0.20593					14	10	2	0	0	0	0.72792	1	10277	10277		11.495	3.3392	1	3757600			18857	3249	11753	11810	18109	18109					-0.028847169248820137
LGTHLPWDEQW	11	Unmodified	_LGTHLPWDEQW_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	691.330402	1380.64625	0.68034	0.00047034	-1.6551	-0.0011442	-0.97478	-0.0006739	691.3291367845119	28.606	0.62384	28.275	27.752	28.376	-0.33138	0.099248	-4.8313E-05	NaN	11.495	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3032800			18858	3249	11753	11810							-0.028847169248820137
LGTIDKNP	8	Unmodified	_LGTIDKNP_					0	0	0		tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1	tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1	tr|U7T554|U7T554_FUSNUTyrrecombinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00315PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	2	429.239993	856.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.213	1	12.044	11.544	12.544	-0.16903								0	0	0	0.8837	1	3781	3781		2.5775	0	1				18859	18622	11754	11811	18110	18110					0.03145809489092244
LGTLGVGLGP	10	Unmodified	_LGTLGVGLGP_					0	0	0			REV__ENST00000486499.1_1_16:31097550-31097697:-|nuORF	REV__ENST00000486499.1_1_16:31097550-31097697:-|nuORF	MSMS	HCT116MG_D190212_S4	4	442.26605224609375	2	442.26601	882.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.899	1	28.558	28.058	29.058	-0.34059								0	0	0	0.90023	1	10412	10412		15.847	1.9411	1		+		18860	15995	11755	11812	18111	18111					0.07150972902866215
LGTLLIYLPP	10	Unmodified	_LGTLLIYLPP_					0	0	0		ENST00000295809.11_1_1:158979845-158979893:+|nuORF	ENST00000295809.11_1_1:158979845-158979893:+|nuORF	ENST00000295809.11_1_1:158979845-158979893:+|nuORF	MSMS	HCT116MG_D190212_S2	2	550.8055419921875	2	550.341718	1098.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.471	1	35.328	34.828	35.828	-0.14245								0	0	0	0.93576	1	13232	13232		7.9102	0	1				18861	6977	11756	11813	18112	18112					0.12349534210693491
LGTNILSVMPA	11	Unmodified	_LGTNILSVMPA_					0	0	0		MS4A15|p.A149P|1|0.42|ENSG00000166961|chr11:60773431-60773431|G/C|missense_variant	MS4A15|p.A149P|1|0.42|ENSG00000166961|chr11:60773431-60773431|G/C|missense_variant	MS4A15|p.A149P|1|0.42|ENSG00000166961|chr11:60773431-60773431|G/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	557.8088989257812	2	558.310092	1114.60563	0.21254	0.00011866	0.33409	0.00018653	0.54663	0.00030519	558.3104259363248	50.704	0.31001	50.704	50.574	50.884	0					8	5	2	0	0	0	0.34294	1	19361	19361		20.415	0	1	35631000			18862	9341	11757	11814	18113	18113					0.05291225431165003
LGTSEVDH	8	Unmodified	_LGTSEVDH_					0	0	0		ENST00000504880.5_1_5:54992856-54993786:-|nuORF;ENST00000514806.5_1_5:54965038-54993786:-|nuORF;SLC38A9|p.S312Qfs*6|2|0.23|ENSG00000177058|chr5:55652547-55652547|A/-|frameshift_variant;SLC38A9|p.F371Lfs*10|1|0.36|ENSG00000177058|chr5:55645843-55645843|A/-|frameshift_variant;nc|ENSG00000177058|Q8NBW4-2|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9	ENST00000504880.5_1_5:54992856-54993786:-|nuORF	ENST00000504880.5_1_5:54992856-54993786:-|nuORF	MSMS	HCT116MG_D190212_S4	4	429.088623046875	2	429.203607	856.392661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.716	1	22.479	21.979	22.979	-0.23758								0	0	0	0.8837	1	7917	7917		10.183	0	1				18863	5448	11758	11815	18114	18114					-0.04127944304320863
LGTTVRDGKWS	11	Unmodified	_LGTTVRDGKWS_					0	0	0			REV__ENST00000246174.6_2_X:101856417-101857057:+|nuORF	REV__ENST00000246174.6_2_X:101856417-101857057:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	610.325439453125	2	610.325119	1218.63569	0.5909	0.00036064	-0.14493	-8.8452E-05	0.44598	0.00027219	610.3249666157955	29.092	2.0935	28.87	27.847	29.941	-0.22196					80	39	3	0	0	0	0.74191	1	10637	10637		7.1017	7.1017	1	28886000	+		18864	14574	11759	11816	18115	18115					0.035113004207232734
LGTVIAYLPY	10	Unmodified	_LGTVIAYLPY_					0	0	0		ENST00000581166.5_1_17:56423089-56423377:-|nuORF	ENST00000581166.5_1_17:56423089-56423377:-|nuORF	ENST00000581166.5_1_17:56423089-56423377:-|nuORF	MSMS	HCT116MG_D190212_S2	2	555.3132934570312	2	555.3157	1108.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.196	1	30.929	30.429	31.429	-0.26704								0	0	0	0.89194	1	11499	11499		16.942	5.302	1				18865	8955	11760	11817	18116	18116					0.06688370796950949
LGTVLFGWWS	10	Unmodified	_LGTVLFGWWS_					0	0	0			REV__ABCC3|p.A353T|1|0.34|ENSG00000108846|chr17:50663739-50663739|G/A|missense_variant	REV__ABCC3|p.A353T|1|0.34|ENSG00000108846|chr17:50663739-50663739|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	583.1196899414062	2	583.305667	1164.59678	0.51586	0.00030091	-0.45255	-0.00026397	0.063315	3.6932E-05	583.3052249837164	50.815	0.20623	50.642	50.506	50.712	-0.17273					9	3	3	0	0	0	0.76634	1	19454	19454		14.838	1.7958	1	23325000	+		18866	9826	11761	11818	18117	18117					0.02106619856999714
LGVAEAVAA	9	Unmodified	_LGVAEAVAA_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	HCT116MG_D190212_S3	3	800.4515380859375	1	800.451245	799.443968	0.80057	0.00064081	0.1493	0.00011951	0.94987	0.00076032	800.4513178963629	47.05	0.36485	46.736	46.542	46.907	-0.31405					9	6	2	0	0	0	0.050632	1	17662	17662		74.396	3.6808	1	6766700			18867	4721	11762	11819	18118	18118					0.03622424460365892
LGVAENRESWL	11	Unmodified	_LGVAENRESWL_					0	0	0		ENST00000497459.1_1_1:243651151-243663084:+|nuORF	ENST00000497459.1_1_1:243651151-243663084:+|nuORF	ENST00000497459.1_1_1:243651151-243663084:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	425.2227478027344	3	425.222693	1272.64625	0.0094839	4.0328E-06	-0.31132	-0.00013238	-0.30184	-0.00012835	425.22269580838133	16.655	0.26022	16.655	16.525	16.785	0					7	4	3	0	0	0	0.73364	1	5645	5645		4.7159	0	1	4862300			18868	8401	11763	11820	18119	18119					0.02083283075126019
LGVAQLRLHQ	10	Unmodified	_LGVAQLRLHQ_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MSMS	HCT116MG_D190212_S1	1	567.9868774414062	2	567.840739	1133.66693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.162	1	24.162	23.662	24.662	0								0	0	0	0.92272	1	8638	8638		10.824	0.024421	1				18869	879	11764	11821	18120	18120					0.10543918245457462
LGVGKNIP	8	Unmodified	_LGVGKNIP_					0	0	0		ENST00000369014.9_1_1:150594969-150595035:-|nuORF	ENST00000369014.9_1_1:150594969-150595035:-|nuORF	ENST00000369014.9_1_1:150594969-150595035:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	399.2461853027344	2	399.247621	796.480688	-0.020232	-8.0778E-06	-0.29428	-0.00011749	-0.31451	-0.00012557	399.24623600588853	45.478	1.1473	45.478	44.931	46.079	0					46	21	3	0	0	0	0.84415	1	17274	17274		6.3541	3.4649	1	47396000			18870	7407	11765	11822	18121	18121					0.07430721076946156
LGVGKNIP	8	Unmodified	_LGVGKNIP_					0	0	0		ENST00000369014.9_1_1:150594969-150595035:-|nuORF	ENST00000369014.9_1_1:150594969-150595035:-|nuORF	ENST00000369014.9_1_1:150594969-150595035:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	399.247621	796.480688	0.0034192	1.3651E-06	-3.5408	-0.0014136	-3.5374	-0.0014123	399.2461752618467	45.271	1.9113	45.179	44.527	46.439	-0.092472	-0.13502	1.9329E-05	NaN	6.3541	87	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2853200000			18871	7407	11765	11822							0.07430721076946156
LGVGKNIP	8	Unmodified	_LGVGKNIP_					0	0	0		ENST00000369014.9_1_1:150594969-150595035:-|nuORF	ENST00000369014.9_1_1:150594969-150595035:-|nuORF	ENST00000369014.9_1_1:150594969-150595035:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	399.247621	796.480688	0.086079	3.4367E-05	-3.5119	-0.0014021	-3.4258	-0.0013677	399.24616918489073	45.642	2.3278	45.331	44.53	46.858	-0.31094	0.017044	4.2432E-05	NaN	6.3541	124	50	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	790710000			18872	7407	11765	11822							0.07430721076946156
LGVGKNIP	8	Unmodified	_LGVGKNIP_					0	0	0		ENST00000369014.9_1_1:150594969-150595035:-|nuORF	ENST00000369014.9_1_1:150594969-150595035:-|nuORF	ENST00000369014.9_1_1:150594969-150595035:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	399.247621	796.480688	0.15893	6.3453E-05	-3.6045	-0.0014391	-3.4456	-0.0013756	399.2461496172476	45.641	2.3929	45.268	44.586	46.979	-0.37266	-0.045691	-3.1569E-05	NaN	6.3541	129	68	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	997210000			18873	7407	11765	11822							0.07430721076946156
LGVGRNRP	8	Unmodified	_LGVGRNRP_					0	0	0		ENST00000357736.8_1_17:79877633-79877984:-|nuORF	ENST00000357736.8_1_17:79877633-79877984:-|nuORF	ENST00000357736.8_1_17:79877633-79877984:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	868.5110473632812	1	868.51116	867.503883	0.882	0.00076603	0.20652	0.00017936	1.0885	0.00094539	868.5111267941868	48.274	0.88224	47.958	47.566	48.449	-0.31596					40	16	3	0	0	0	0.87576	1	18075	18075		0.79363	0	1	63208000			18874	7311	11766	11823	18122	18122					0.06483159914273529
LGVHAATG	8	Unmodified	_LGVHAATG_					0	0	0		nc|ENSG00000163626|Q8N8Q8-2|COX18;nc|ENSG00000163626|Q8N8Q8-3|COX18;ENST00000421792.2_1_4:73934271-73935366:-|nuORF;nc|ENSG00000163626|Q8N8Q8-4|COX18;nc|ENSG00000163626|Q8N8Q8|COX18;ENSG00000163626|ENST00000507544|COX18	nc|ENSG00000163626|Q8N8Q8-2|COX18	nc|ENSG00000163626|Q8N8Q8-2|COX18	MSMS	HCT116MG_D190212_S4	4	363.20050048828125	2	363.20067	724.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.622	1	17.452	16.952	17.952	-0.17047								0	0	0	0.8217	1	5859	5859		20.871	0	1				18875	4615	11767	11824	18123	18123					0.013570019746566686
LGVKKKLRPP	10	Unmodified	_LGVKKKLRPP_					0	0	0		nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000541623.5_1_11:72398731-72399534:-|nuORF;ENST00000542612.1_1_11:72398360-72400579:-|nuORF;ENST00000544721.5_1_11:72396711-72399699:-|nuORF;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-7|ARAP1	nc|ENSG00000186635|Q96P48-7|ARAP1	MSMS	HCT116MG_D190212_S3	3	379.2589416503906	3	379.260642	1134.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.312	1	28.106	27.606	28.606	-0.20593								0	0	0	0.96769	1	10240	10240		0.77653	0.54069	1				18876	5899	11768	11825	18124	18124					0.19810842698711895
LGVPGSEQP	9	Unmodified	_LGVPGSEQP_					0	0	0		nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF	nc|ENSG00000186635|Q96P48-7|ARAP1	nc|ENSG00000186635|Q96P48-7|ARAP1	MSMS	HCT116MG_D190212_S4	4	442.2291564941406	2	442.229625	882.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.013	1	29.656	29.156	30.156	-0.3571								0	0	0	0.69272	1	10863	10863		19.439	1.304	1				18877	5899	11769	11826	18125	18125					-0.0012278089056962926
LGVSLGPA	8	Unmodified	_LGVSLGPA_					0	0	0		ENST00000392357.1_1_17:80014616-80015000:+|nuORF	ENST00000392357.1_1_17:80014616-80015000:+|nuORF	ENST00000392357.1_1_17:80014616-80015000:+|nuORF	MSMS	HCT116MG_D190212_S2	2	357.213134765625	2	357.213246	712.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.9	1	21.515	21.015	22.015	-0.38503								0	0	0	0.8837	1	7731	7731		11.114	0	1				18878	7610	11770	11827	18126	18126					0.0442305677722743
LGVVVLALPPL	11	Unmodified	_LGVVVLALPPL_					0	0	0			REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	MSMS	HCT116MG_D190212_S3	3	545.86474609375	2	545.86536	1089.71617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.459	1	12.522	12.022	13.022	0.06246								0	0	0	0.96141	1	3886	3886		0.35063	0	1		+		18879	15884	11771	11828	18127	18127					0.1748981348171128
LGVVVLALPPL	11	Unmodified	_LGVVVLALPPL_					0	0	0			REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	MSMS	HCT116MG_D190212_S3	3	545.8646850585938	2	545.86536	1089.71617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.006	1	13.075	12.575	13.575	0.069158								0	0	0	0.96141	1	4098	4098		0.35063	0	1		+		18880	15884	11771	11828	18128	18128					0.1748981348171128
LGWISVTCDFR	11	Unmodified	_LGWISVTCDFR_					0	0	0			REV__ENST00000377047.8_1_13:93879270-93879528:+|nuORF	REV__ENST00000377047.8_1_13:93879270-93879528:+|nuORF	MSMS	HCT116MG_D190212_S3	3	432.56219482421875	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.131	1	14.21	13.71	14.71	0.079037								0	0	0	0.9613	1	4528	4528		0.40827	0	1		+		18881	15231	11772	11829	18129	18129					-0.0027487130862482445
LGWQRRRRGRG	11	Unmodified	_LGWQRRRRGRG_					0	0	0		ENST00000369756.3_2_6:82461889-82462327:-|nuORF;ENST00000369754.7_2_6:82462234-82462363:-|nuORF	ENST00000369756.3_2_6:82461889-82462327:-|nuORF	ENST00000369756.3_2_6:82461889-82462327:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	699.4093017578125	2	699.408509	1396.80247	0.86161	0.00060262	-0.031563	-2.2075E-05	0.83005	0.00058054	699.4083385544634	53.387	2.917	53.387	52.28	55.197	0					145	56	4	0	0	0	0.74191	1	20341	20341		1.3295	1.3295	1	595800000			18882	7412	11773	11830	18130	18130					0.11993630879601369
LGWQRRRRGRG	11	Unmodified	_LGWQRRRRGRG_					0	0	0		ENST00000369756.3_2_6:82461889-82462327:-|nuORF;ENST00000369754.7_2_6:82462234-82462363:-|nuORF	ENST00000369756.3_2_6:82461889-82462327:-|nuORF	ENST00000369756.3_2_6:82461889-82462327:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	699.408509	1396.80247	0.86161	0.00060262	-0.031563	-2.2075E-05	0.83005	0.00058054	699.4083385544634	53.387	2.917	53.387	52.28	55.197	0	0	0	NaN	1.3295	145	56	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595800000			18883	7412	11773	11830							0.11993630879601369
LGWRLKRP	8	Unmodified	_LGWRLKRP_					0	0	0		DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	513.322265625	2	513.321986	1024.62942	0.28973	0.00014872	-0.032016	-1.6434E-05	0.25771	0.00013229	513.3217439955602	61.424	1.141	61.424	61.055	62.196	0					25	21	2	0	0	0	0.8672	1	23974	23974		2.3027	0.4585	1	8423000			18884	649	11774	11831	18131	18131					0.11808871770517726
LGWRLKRPR	9	Unmodified	_LGWRLKRPR_					0	0	0		DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	591.3712768554688	2	591.372541	1180.73053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.167	1	37.167	36.667	37.667	0								0	0	0	0.76877	1	13878	13878		5.2307	0.90143	1				18885	649	11775	11832	18132	18132					0.14739323473213517
LGWWRPEWLE	10	Unmodified	_LGWWRPEWLE_					0	0	0		ENST00000274376.10_1_5:86564395-86564485:+|nuORF	ENST00000274376.10_1_5:86564395-86564485:+|nuORF	ENST00000274376.10_1_5:86564395-86564485:+|nuORF	MSMS	HCT116MG_D190212_S3	3	457.9011535644531	3	457.899662	1370.67716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.407	1	13.476	12.976	13.976	0.069158								0	0	0	0.96911	1	4249	4249		0.15932	0.064481	1				18886	6928	11776	11833	18133	18133					0.006644811800242678
LGWYRSWP	8	Unmodified	_LGWYRSWP_					0	0	0			REV__ENST00000377814.6_1_13:73302069-73305432:+|nuORF	REV__ENST00000377814.6_1_13:73302069-73305432:+|nuORF	MSMS	HCT116MG_D190212_S4	4	355.0697021484375	3	355.51526	1063.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.052	1	25.762	25.262	26.262	-0.29022								0	0	0	0.8837	1	9262	9262		1.8442	0.6509	1		+		18887	15241	11777	11834	18134	18134					-0.005270891457712423
LGYRAVYLNDT	11	Unmodified	_LGYRAVYLNDT_					0	0	0			REV__nc|ENSG00000111325|Q6N063-3|OGFOD2	REV__nc|ENSG00000111325|Q6N063-3|OGFOD2	MSMS	HCT116MG_D190212_S3	3	428.43115234375	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.671	1	13.746	13.246	14.246	0.074899								0	0	0	0.96111	1	4351	4351		0.50596	0	1		+		18888	11426	11778	11835	18135	18135					0.020521672179029338
LGYSGTIGLI	10	Unmodified	_LGYSGTIGLI_					0	0	0			REV__ENSG00000175485|ENST00000311352|OR52W1	REV__ENSG00000175485|ENST00000311352|OR52W1	MULTI-SECPEP	HCT116MG_D190212_S2	2	497.29840087890625	2	497.2844	992.554247	0.28434	0.0001414	-0.39088	-0.00019438	-0.10654	-5.2983E-05	497.2841450447134	53.882	0.36041	53.692	53.532	53.893	-0.1894					11	6	2	0	0	0	0.21782	1	20717	20717		54.774	7.1792	1	9358100	+		18889	13517	11779	11836	18136	18136					0.05767224728754172
LHAGSSSE	8	Unmodified	_LHAGSSSE_					0	0	0			REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	MSMS	HCT116MG_D190212_S2	2	394.1829528808594	2	394.182675	786.350796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.995	1	42.925	42.425	43.425	-0.070297								0	0	0	0.8837	1	16289	16289		10.183	0	1		+		18890	16713	11780	11837	18137	18137					-0.05092499992849753
LHAHKLRVD	9	Unmodified	_LHAHKLRVD_					0	0	0		CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	363.5489196777344	3	363.548964	1087.62506	-0.00058726	-2.135E-07	0.089101	3.2392E-05	0.088514	3.2179E-05	363.5489196545138	18.011	0.15646	18.011	17.88	18.037	0					4	2	2	0	0	0	0.41788	1	6175	6175		16.275	7.2983	1	3621300		+	18891	545;5988	11781	11838	18138	18138					0.08475362556941946
LHAHKLRVD	9	Unmodified	_LHAHKLRVD_					0	0	0		CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MSMS	HCT116MG_D190212_S4	4	363.5489501953125	3	363.548964	1087.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.792	1	17.617	17.117	18.117	-0.17501								0	0	0	0.76638	1	5927	5927		17.863	0	1			+	18892	545;5988	11781	11838	18139	18139					0.08475362556941946
LHALTNILY	9	Unmodified	_LHALTNILY_					0	0	0		ENST00000509089.1_1_4:62453105-62542754:+|nuORF	ENST00000509089.1_1_4:62453105-62542754:+|nuORF	ENST00000509089.1_1_4:62453105-62542754:+|nuORF	MSMS	HCT116MG_D190212_S1	1	529.3045043945312	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.448	1	48.448	47.948	48.948	0								0	0	0	0.7676	1	18435	18435		9.3474	0	1				18893	8486	11782	11839	18140	18140					0.0707461985698501
LHCGSALF	8	Unmodified	_LHCGSALF_					0	0	0		ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	MSMS	HCT116MG_D190212_S4	4	424.2091979980469	2	424.210181	846.405809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.984	1	48.619	48.119	49.119	-0.365								0	0	0	0.8837	1	18154	18154		0.79363	0	1				18894	3048	11783	11840	18141	18141					-0.023537847259490263
LHCIRRRRRHV	11	Unmodified	_LHCIRRRRRHV_					0	0	0			REV__sp|P16800|CEP2_HCMVACytoplasmicenvelopmentprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL94PE=1SV=1	REV__sp|P16800|CEP2_HCMVACytoplasmicenvelopmentprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL94PE=1SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	500.7985534667969	3	501.3005	1500.87967	0.38343	0.00019222	-0.74101	-0.00037147	-0.35758	-0.00017925	501.3001006248394	52.165	0.51522	52.165	52.021	52.536	0					10	9	2	0	0	0	0.36631	1	19927	19927		0	0	1	22483000	+		18895	17551	11784	11841	18142	18142					0.14926525824284909
LHCLYGTG	8	Unmodified	_LHCLYGTG_					0	0	0		ENST00000565460.1_1_16:68289553-68293557:+|nuORF;nc|ENSG00000103066|Q8NCC3-2|PLA2G15;ENSG00000103066|ENST00000219345|PLA2G15	ENST00000565460.1_1_16:68289553-68293557:+|nuORF	ENST00000565460.1_1_16:68289553-68293557:+|nuORF	MSMS	HCT116MG_D190212_S1	1	432.2073974609375	2	432.207638	862.400723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.322	1	22.322	21.822	22.822	0								0	0	0	0.8837	1	7897	7897		5.7604	0	1				18896	1874	11785	11842	18143	18143					-0.035980885885464886
LHCRVQHY	8	Unmodified	_LHCRVQHY_					0	0	0			REV__ENST00000538150.1_1_11:62602806-62603310:-|nuORF	REV__ENST00000538150.1_1_11:62602806-62603310:-|nuORF	MSMS	HCT116MG_D190212_S3	3	528.2659301757812	2	528.26381	1054.51307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.797	1	28.575	28.075	29.075	-0.22195								0	0	0	0.8837	1	10436	10436		15.768	0.92995	1		+		18897	16355	11786	11843	18144	18144					-0.012008147916958478
LHDEEAPRL	9	Unmodified	_LHDEEAPRL_					0	0	0			REV__nc|ENSG00000025770|Q6IBW4-2|NCAPH2	REV__nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MSMS	HCT116MG_D190212_S1	1	540.2771606445312	2	540.277638	1078.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.585	1	21.585	21.085	22.085	0								0	0	0	0.76781	1	7600	7600		8.5933	0	1		+		18898	10561	11787	11844	18145	18145					0.004593669495079666
LHDSLVGL	8	Unmodified	_LHDSLVGL_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MSMS	HCT116MG_D190212_S1	1	427.2424621582031	2	427.242535	852.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.958	1	30.958	30.458	31.458	0								0	0	0	0.8837	1	11373	11373		5.7604	0	1		+		18899	11452	11788	11845	18146	18146					0.0383811335171913
LHEEFLSQL	9	Unmodified	_LHEEFLSQL_					0	0	0			REV__nc|ENSG00000196943|Q86U38-2|NOP9	REV__nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-MSMS	HCT116MG_D190212_S3	3	558.2901000976562	2	558.290214	1114.56587	0.0089329	4.9872E-06	0.080865	4.5146E-05	0.089797	5.0133E-05	558.2905398079417	36.19	0.20826	35.889	35.729	35.938	-0.30042					5	3	2	0	0	0	0.45867	1	13370	13370		19.257	1.1106	1	7019100	+		18900	14053	11789	11846	18147	18147					0.013174217521054743
LHEKIRDA	8	Unmodified	_LHEKIRDA_					0	0	0		ENST00000431492.2_1_1:192216230-192216602:-|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENSG00000164163|ENST00000296577|ABCE1	ENST00000431492.2_1_1:192216230-192216602:-|nuORF	ENST00000431492.2_1_1:192216230-192216602:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	491.2775573730469	2	491.277441	980.540328	0.30495	0.00014981	0.17377	8.5369E-05	0.47872	0.00023518	491.2773558013463	27.047	0.20782	27.047	26.918	27.125	0					6	3	2	0	0	0	0.76189	1	9825	9825		15.847	0.5987	1	7415300			18901	4673	11790	11847	18148	18148					0.049279920203161964
LHEQLSGL	8	Unmodified	_LHEQLSGL_					0	0	0			REV__ENST00000495058.5_1_20:56818531-56820980:-|nuORF	REV__ENST00000495058.5_1_20:56818531-56820980:-|nuORF	MSMS	HCT116MG_D190212_S3	3	448.7456359863281	2	448.745442	895.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.027	1	18.103	17.603	18.603	0.076334								0	0	0	0.55695	1	6096	6096		39.95	1.9757	1		+		18902	16063	11791	11848	18149	18149					0.024412118633904356
LHFLAGTELN	10	Unmodified	_LHFLAGTELN_					0	0	0		nc|ENSG00000103356|Q5JPH6-2|EARS2	nc|ENSG00000103356|Q5JPH6-2|EARS2	nc|ENSG00000103356|Q5JPH6-2|EARS2	MULTI-SECPEP	HCT116MG_D190212_S1	1	557.797607421875	2	557.798206	1113.58186	0.46726	0.00026064	-0.24726	-0.00013792	0.21999	0.00012271	557.7978269326854	34.311	0.26082	34.311	34.128	34.389	0					6	4	2	0	0	0	0.30526	1	12737	12737		10.074	0	1	8008800			18903	9410	11792	11849	18150	18150					0.029611279890104925
LHGANVQNV	9	Unmodified	_LHGANVQNV_					0	0	0			REV__ENSG00000121057|ENST00000337714|AKAP1	REV__ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	476.25457763671875	2	476.253966	950.493378	0.20471	9.7496E-05	0.039192	1.8665E-05	0.24391	0.00011616	476.2539505849103	21.432	0.36807	21.432	21.226	21.594	0					9	6	2	0	0	0	0.41514	1	7563	7563		21.747	2.3847	1	3357900	+		18904	11705	11793	11850	18151	18151					0.01615132469191849
LHGGTPLH	8	Unmodified	_LHGGTPLH_					0	0	0			REV__nc|ENSG00000158089|Q96FL9-3|GALNT14	REV__nc|ENSG00000158089|Q96FL9-3|GALNT14	MSMS	HCT116MG_D190212_S1	1	416.2292785644531	2	416.22722	830.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.635	1	32.635	32.135	33.135	0								0	0	0	0.8837	1	12049	12049		6.3541	0	1		+		18905	17178	11794	11851	18152	18152					0.017883797573290394
LHGIFYPHL	9	Unmodified	_LHGIFYPHL_					0	0	0		ENSG00000064652|ENST00000261369|SNX24;ENST00000513881.5_1_5:122337738-122343441:+|nuORF;ENST00000503149.5_1_5:122301174-122343441:+|nuORF	ENSG00000064652|ENST00000261369|SNX24	ENSG00000064652|ENST00000261369|SNX24	MSMS	HCT116MG_D190212_S1	1	366.2024230957031	3	366.202793	1095.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.382	1	27.382	26.882	27.882	0								0	0	0	0.76862	1	9933	9933		5.7319	1.4026	1				18906	1140	11795	11852	18153	18153					0.04258056922412834
LHGQQRAGP	9	Unmodified	_LHGQQRAGP_					0	0	0			REV__ENST00000555253.1_1_14:75413434-75413704:-|nuORF	REV__ENST00000555253.1_1_14:75413434-75413704:-|nuORF	MSMS	HCT116MG_D190212_S3	3	482.260009765625	2	482.259582	962.504612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.267	1	28.061	27.561	28.561	-0.20593								0	0	0	0.76611	1	10222	10222		14.582	1.0738	1		+		18907	16458	11796	11853	18154	18154					0.021859545633219568
LHILFTPAVLE	11	Unmodified	_LHILFTPAVLE_					0	0	0		ENST00000562053.1_1_15:43689449-43690378:+|nuORF;ENST00000563963.1_1_15:43687726-43694213:+|nuORF;ENSG00000137822|ENST00000564079|TUBGCP4;nc|ENSG00000137822|Q9UGJ1|TUBGCP4	ENST00000562053.1_1_15:43689449-43690378:+|nuORF	ENST00000562053.1_1_15:43689449-43690378:+|nuORF	MSMS	HCT116MG_D190212_S1	1	417.8676452636719	3	418.24818	1251.72271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.281	1	36.281	35.781	36.781	0								0	0	0	0.83604	1	13521	13521		28.234	0.052357	1				18908	3507	11797	11854	18155	18155					0.10691706642410281
LHISCLKLY	9	Unmodified	_LHISCLKLY_					0	0	0			REV__ENST00000502773.5_1_4:157682894-157683008:-|nuORF	REV__ENST00000502773.5_1_4:157682894-157683008:-|nuORF	MSMS	HCT116MG_D190212_S1	1	545.3081665039062	2	545.309895	1088.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.161	1	31.161	30.661	31.661	0								0	0	0	0.76611	1	11455	11455		14.582	5.2343	1		+		18909	16123	11798	11855	18156	18156					0.06447850501967878
LHIVYRLI	8	Unmodified	_LHIVYRLI_					0	0	0			REV__ENSG00000159461|ENST00000290649|AMFR	REV__ENSG00000159461|ENST00000290649|AMFR	MSMS	HCT116MG_D190212_S1	1	513.825439453125	2	513.826569	1025.63859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.038	1	58.038	57.538	58.538	0								0	0	0	0.8837	1	22346	22346		9.3474	0	1		+		18910	12806	11799	11856	18157	18157					0.12679220336167418
LHIYYRLLLIW	11	Unmodified	_LHIYYRLLLIW_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	HCT116MG_D190212_S2	2	501.9687805175781	3	501.634257	1501.88094	0.4212	0.00021129	0.39119	0.00019624	0.8124	0.00040753	501.63434742852496	54.875	2.5138	54.687	53.071	55.585	-0.18797					156	48	5	0	0	0	0.74191	3	20748	20748;20999;21021		1.4551	1.4551	1	262480000	+		18911	13961	11800	11857	18158;18159;18160	18158					0.15007625621524312
LHIYYRLLLIW	11	Unmodified	_LHIYYRLLLIW_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	HCT116MG_D190212_S3	3	501.6342468261719	3	501.634257	1501.88094	0.43393	0.00021768	0.098408	4.9365E-05	0.53234	0.00026704	501.6341690616585	55.098	0.99353	54.806	54.09	55.083	-0.29181					32	18	3	0	0	0	0.74191	1	20844	20844		0.50596	0.09769	1	4333500	+		18912	13961	11800	11857	18161	18161					0.15007625621524312
LHIYYRLLLIW	11	Unmodified	_LHIYYRLLLIW_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	HCT116MG_D190212_S3	3	501.250732421875	3	501.634257	1501.88094	0.43393	0.00021768	0.098408	4.9365E-05	0.53234	0.00026704	501.6341690616585	55.098	0.99353	54.806	54.09	55.083	-0.29181					32	18	3	0	0	0	0.36616	1	20700	20700		1.4551	1.4551	1	4333500	+		18913	13961	11800	11857	18162	18162					0.15007625621524312
LHKALRGPKL	10	Unmodified	_LHKALRGPKL_					0	0	0			REV__CON__Q9TRI1	REV__CON__Q9TRI1	MSMS	HCT116MG_D190212_S4	4	378.2485046386719	3	378.248625	1131.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.684	1	36.299	35.799	36.799	-0.38486								0	0	0	0.96183	1	13434	13434		2.086	0.89267	1		+	+	18914	10280	11801	11858	18163	18163					0.1634538552182221
LHKKKKPP	8	Unmodified	_LHKKKKPP_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;MYO9A|p.Y1422Ifs*8|1|0.18|ENSG00000066933|chr15:71898239-71898239|A/-|frameshift_variant;MYO9B|p.K1385Sfs*68|1|0.45|ENSG00000099331|chr19:17198220-17198220|A/-|frameshift_variant;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.L1961*|2|0.14|ENSG00000066933|chr15:71878089-71878089|A/-|frameshift_variant;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B|p.R2060Gfs*68|2|0.32|ENSG00000099331|chr19:17212009-17212009|C/-|frameshift_variant;ENSG00000099331|ENST00000682292|MYO9B;MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	nc|ENSG00000066933|B2RTY4-5|MYO9A;MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	nc|ENSG00000066933|B2RTY4-5|MYO9A	MSMS	HCT116MG_D190212_S3	3	488.3277282714844	2	488.326737	974.63892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.99	1	51.681	51.181	52.181	-0.30927								0	0	0	0.8837	1	19643	19643		0.79363	0.10326	1				18915	1179;9354	11802	11859	18164	18164					0.15058640056031436
LHKKQTRKLM	10	Unmodified	_LHKKQTRKLM_					0	0	0			REV__ENST00000312938.4_1_3:101383425-101383506:-|nuORF	REV__ENST00000312938.4_1_3:101383425-101383506:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	641.3908081054688	2	641.892449	1281.77035	0.80825	0.00051881	0.20137	0.00012926	1.0096	0.00064807	641.892578812601	54.561	0.25394	54.561	54.434	54.688	0					7	4	2	0	0	0	0.31042	1	20936	20936		3.2813	0	1	159900000	+		18916	14846	11803	11860	18165	18165					0.14073082361642264
LHKLNEEPL	9	Unmodified	_LHKLNEEPL_					0	0	0		SOS2|p.S1140N|1|0.49|ENSG00000100485|chr14:50120345-50120345|C/T|missense_variant	SOS2|p.S1140N|1|0.49|ENSG00000100485|chr14:50120345-50120345|C/T|missense_variant	SOS2|p.S1140N|1|0.49|ENSG00000100485|chr14:50120345-50120345|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	365.2180480957031	3	364.873113	1091.59751	-0.0085472	-3.1186E-06	0.28678	0.00010464	0.27824	0.00010152	364.8730360188783	40.743	0.15436	40.674	40.571	40.725	-0.069626					4	2	2	0	0	0	0.24169	1	15387	15387		15.248	0	1	6663900			18917	18186	11804	11861	18166	18166					0.05537414506034111
LHKRGTPL	8	Unmodified	_LHKRGTPL_					0	0	0			REV__ENST00000420986.6_2_11:111951254-111953238:+|nuORF	REV__ENST00000420986.6_2_11:111951254-111953238:+|nuORF	MSMS	HCT116MG_D190212_S1	1	461.2857360839844	2	461.285069	920.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.313	1	50.313	49.813	50.813	0								0	0	0	0.8837	1	19194	19194		11.114	4.7604	1		+		18918	15321	11805	11862	18167	18167					0.09212903608181477
LHLFLLLHSL	10	Unmodified	_LHLFLLLHSL_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MSMS	HCT116MG_D190212_S2	2	603.3716430664062	2	603.373884	1204.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.514	1	54.324	53.824	54.824	-0.1894								0	0	0	0.86471	1	20990	20990		20.454	7.4112	1		+		18919	12625	11806	11863	18168	18168					0.1390373408751202
LHLILKAPGMD	11	Unmodified	_LHLILKAPGMD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MSMS	HCT116MG_D190212_S2	2	403.2323303222656	3	403.233765	1206.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.6964	1	6.4992	5.9992	6.9992	-0.19725								0	0	0	0.9619	1	2107	2107		0.094841	0.094841	1				18920	5560	11807	11864	18169	18169					0.08439193593494565
LHLKKEAR	8	Unmodified	_LHLKKEAR_					0	0	0		ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	994.615966796875	1	994.615625	993.608348	0.5646	0.00056156	-0.15069	-0.00014988	0.41391	0.00041168	994.6151283937602	60.738	0.66683	60.738	60.595	61.262	0					23	12	3	0	0	0	0.8672	1	23423	23423		2.3027	0	1	146250000			18921	220	11808	11865	18170	18170					0.11128861670988499
LHLKKEAR	8	Unmodified	_LHLKKEAR_					0	0	0		ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	994.615625	993.608348	0.71717	0.00071331	0.80732	0.00080298	1.5245	0.0015163	994.6161889432183	60.753	0.20552	60.605	60.476	60.681	-0.14852	-0.066554	0.00051261	NaN	2.3027	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9788800			18922	220	11808	11865							0.11128861670988499
LHLKNQHKRKI	11	Unmodified	_LHLKNQHKRKI_					0	0	0		NOL8|p.N280Ifs*29|1|0.04|ENSG00000198000|chr9:92315786-92315786|T/-|frameshift_variant;NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant;nc|ENSG00000198000|Q76FK4-2|NOL8;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	NOL8|p.N280Ifs*29|1|0.04|ENSG00000198000|chr9:92315786-92315786|T/-|frameshift_variant	NOL8|p.N280Ifs*29|1|0.04|ENSG00000198000|chr9:92315786-92315786|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	708.3688354492188	2	707.941319	1413.86809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.024	1	38.024	37.524	38.524	0								0	0	0	0.94924	1	14224	14224		6.7232	0.51738	1				18923	6194	11809	11866	18171	18171					0.1777060728197739
LHLKPKFA	8	Unmodified	_LHLKPKFA_					0	0	0			REV__ENST00000537582.1_1_12:132281612-132284030:+|nuORF	REV__ENST00000537582.1_1_12:132281612-132284030:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	477.3170471191406	2	477.300188	952.585822	0.18324	8.7463E-05	0.051597	2.4627E-05	0.23484	0.00011209	477.3003526876491	56.321	0.41222	56.321	56.171	56.583	0					12	7	2	0	0	0	0.86388	1	21719	21719		2.8892	0	1	10223000	+		18924	16350	11810	11867	18172	18172					0.10763262273360397
LHLKPKFA	8	Unmodified	_LHLKPKFA_					0	0	0			REV__ENST00000537582.1_1_12:132281612-132284030:+|nuORF	REV__ENST00000537582.1_1_12:132281612-132284030:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	477.300188	952.585822	0.18324	8.7463E-05	0.051597	2.4627E-05	0.23484	0.00011209	477.3003526876491	56.321	0.41222	56.321	56.171	56.583	0	0.017784	-9.5239E-06	NaN	2.8892	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10223000	+		18925	16350	11810	11867							0.10763262273360397
LHLKPKFA	8	Unmodified	_LHLKPKFA_					0	0	0			REV__ENST00000537582.1_1_12:132281612-132284030:+|nuORF	REV__ENST00000537582.1_1_12:132281612-132284030:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	477.300188	952.585822	0.32788	0.0001565	0.10221	4.8784E-05	0.43009	0.00020528	477.3001162846809	56.468	0.26177	56.286	56.156	56.418	-0.18261	-0.017784	3.879E-05	NaN	2.8892	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4449200	+		18926	16350	11810	11867							0.10763262273360397
LHLLMVQLR	9	Unmodified	_LHLLMVQLR_					0	0	0			REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF	REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	561.8463134765625	2	561.844436	1121.67432	0.47764	0.00026836	1.3728	0.00077128	1.8504	0.0010396	561.8455664626817	51.623	1.0816	51.439	51.166	52.248	-0.18369					34	20	3	0	0	0	0.65706	1	19790	19790		7.9102	0	1	26762000	+		18927	14596	11811	11868	18173	18173					0.11834934521539253
LHLLTRGRPD	10	Unmodified	_LHLLTRGRPD_					0	0	0			REV__ENSG00000076513|ENST00000261739|ANKRD13A	REV__ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-MSMS	HCT116MG_D190212_S1	1	589.3423461914062	2	589.343646	1176.67274	0.51513	0.00030359	-0.8442	-0.00049752	-0.32906	-0.00019393	589.343051018967	47.697	0.4461	47.697	47.395	47.841	0					12	8	2	0	0	0	0.87801	1	18172	18172		3.9444	0.94915	1	11649000	+		18928	10820	11812	11869	18174	18174					0.09147016757151505
LHLPWRVH	8	Unmodified	_LHLPWRVH_					0	0	0		ENST00000263388.6_1_19:15295119-15295215:-|nuORF	ENST00000263388.6_1_19:15295119-15295215:-|nuORF	ENST00000263388.6_1_19:15295119-15295215:-|nuORF	MSMS	HCT116MG_D190212_S1	1	353.20703125	3	353.206649	1056.59812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.226	1	28.226	27.726	28.726	0								0	0	0	0.8837	1	10275	10275		4.3292	0.38484	1				18929	6879	11813	11870	18175	18175					0.07208298736418328
LHLRCGLKTW	10	Unmodified	_LHLRCGLKTW_					0	0	0			REV__ENST00000425394.6_1_12:56710785-56711043:-|nuORF	REV__ENST00000425394.6_1_12:56710785-56711043:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	409.5401916503906	3	409.565737	1225.67538	-0.0067487	-2.7641E-06	0.066208	2.7116E-05	0.059459	2.4352E-05	409.5657052108937	34.842	0.20756	34.683	34.502	34.709	-0.15834					5	3	2	0	0	0	0.30961	1	12977	12977		6.1918	0	1	12911000	+		18930	15547	11814	11871	18176	18176					0.07157148890428289
LHLRETRI	8	Unmodified	_LHLRETRI_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MSMS	HCT116MG_D190212_S3	3	519.3034057617188	2	519.314358	1036.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.102	1	37.801	37.301	38.301	-0.30137								0	0	0	0.8837	1	14103	14103		5.7604	0	1				18931	3588	11815	11872	18177	18177					0.09731960182648436
LHLRWKRLLL	10	Unmodified	_LHLRWKRLLL_					0	0	0			REV__TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant	REV__TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	674.4400634765625	2	674.440424	1346.86629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.594	1	59.317	58.817	59.817	-0.27731								0	0	0	0.96937	1	22430	22430		0.40072	0	1		+		18932	18029	11816	11873	18178	18178					0.206735982640339
LHLRWKRLLL	10	Unmodified	_LHLRWKRLLL_					0	0	0			REV__TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant	REV__TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	674.4393310546875	2	674.440424	1346.86629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.882	1	60.617	60.117	61.117	-0.26582								0	0	0	0.96937	1	22953	22953		0.40072	0	1		+		18933	18029	11816	11873	18179	18179					0.206735982640339
LHLVFILP	8	Unmodified	_LHLVFILP_					0	0	0		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MSMS	HCT116MG_D190212_S1	1	476.3056945800781	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.868	1	43.868	43.368	44.368	0								0	0	0	0.8837	1	16585	16585		2.8892	0	1				18934	5796	11817	11874	18180	18180					0.11805030558900853
LHLVHWNP	8	Unmodified	_LHLVHWNP_					0	0	0		CA3|p.A116V|1|0.32|ENSG00000164879|chr8:85442187-85442187|C/T|missense_variant;ENSG00000164879|ENST00000285381|CA3	CA3|p.A116V|1|0.32|ENSG00000164879|chr8:85442187-85442187|C/T|missense_variant	CA3|p.A116V|1|0.32|ENSG00000164879|chr8:85442187-85442187|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	508.27655029296875	2	508.277244	1014.53993	0.21391	0.00010873	-0.78767	-0.00040035	-0.57376	-0.00029163	508.2765529223987	51.824	0.26157	51.515	51.332	51.594	-0.30927					7	4	2	0	0	0	0.32196	1	19587	19587		6.3541	0	1	4233900			18935	297	11818	11875	18181	18181					0.03324617091129767
LHLVLPPT	8	Unmodified	_LHLVLPPT_					0	0	0			REV__ENST00000427382.1_1_3:15642931-15643075:+|nuORF	REV__ENST00000427382.1_1_3:15642931-15643075:+|nuORF	MSMS	HCT116MG_D190212_S4	4	445.2772216796875	2	445.278921	888.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.564	1	59.286	58.786	59.786	-0.27731								0	0	0	0.8837	1	22417	22417		2.3027	1.6124	1		+		18936	15562	11819	11876	18182	18182					0.09455867145118191
LHLYCHHGCHH	11	Unmodified	_LHLYCHHGCHH_					0	0	0			REV__ENST00000476429.5_1_2:219143213-219144098:-|nuORF	REV__ENST00000476429.5_1_2:219143213-219144098:-|nuORF	MSMS	HCT116MG_D190212_S1	1	678.7957763671875	2	678.795483	1355.57641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.787	1	10.787	10.287	11.287	0								0	0	0	0.96208	1	3337	3337		0	0	1		+		18937	15919	11820	11877	18183	18183					-0.08715197346100467
LHLYELVF	8	Unmodified	_LHLYELVF_					0	0	0			REV__ENST00000469098.1_1_2:37594344-37599967:+|nuORF	REV__ENST00000469098.1_1_2:37594344-37599967:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	517.29052734375	2	517.289485	1032.56442	0.24866	0.00012863	2.0321	0.0010512	2.2808	0.0011798	517.2906106399097	54.927	0.25594	54.739	54.611	54.867	-0.18797					10	4	3	0	0	0	0.50777	1	21173	21173		40.449	0.49888	1	34366000	+		18938	11559	11821	11878	18184	18184					0.04943832454000585
LHMDSDDEI	9	Unmodified	_LHMDSDDEI_					0	0	0		ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF;nc|ENSG00000104218|Q1MSJ5-2|CSPP1	ENSG00000104218|ENST00000678616|CSPP1	ENSG00000104218|ENST00000678616|CSPP1	MULTI-SECPEP	HCT116MG_D190212_S1	1	537.8190307617188	2	537.724046	1073.43354	0.35629	0.00019159	0.63188	0.00033978	0.98817	0.00053136	538.225810044966	51.603	0.30353	51.603	51.4	51.704	0					9	5	2	0	0	0	0.22781	1	19692	19692		23.148	13.765	1	15316000			18939	1922	11822	11879	18185	18185					-0.100239710470305
LHMKLYMVP	9	Unmodified	_LHMKLYMVP_					0	0	0		ENSG00000102934|ENST00000219207|PLLP	ENSG00000102934|ENST00000219207|PLLP	ENSG00000102934|ENST00000219207|PLLP	MSMS	HCT116MG_D190212_S3	3	566.3067016601562	2	566.306298	1130.59804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.821	1	43.515	43.015	44.015	-0.30616								0	0	0	0.7676	1	16363	16363		9.3474	0.75416	1				18940	1860	11823	11880	18186	18186					0.037967946298749666
LHMSSLSY	8	Unmodified	_LHMSSLSY_					0	0	0			REV__SPAG17|p.D1620Y|1|0.17|ENSG00000155761|chr1:117996662-117996662|C/A|missense_variant	REV__SPAG17|p.D1620Y|1|0.17|ENSG00000155761|chr1:117996662-117996662|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	469.22833251953125	2	469.226028	936.437503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.123	1	31.123	30.623	31.623	0								0	0	0	0.8837	1	11440	11440		15.768	9.4141	1		+		18941	17584	11824	11881	18187	18187					-0.033258367626331165
LHPCQLILLPP	11	Unmodified	_LHPCQLILLPP_					0	0	0			REV__ENST00000560935.1_1_14:24652387-24652645:-|nuORF	REV__ENST00000560935.1_1_14:24652387-24652645:-|nuORF	MSMS	HCT116MG_D190212_S4	4	622.3638916015625	2	622.365201	1242.71585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.89	1	39.51	39.01	40.01	-0.37936								0	0	0	0.95521	1	14623	14623		3.5965	0	1		+		18942	16490	11825	11882	18188	18188					0.10420070490226863
LHPKEESL	8	Unmodified	_LHPKEESL_					0	0	0			REV__nc|ENSG00000160271|Q12967-2|RALGDS	REV__nc|ENSG00000160271|Q12967-2|RALGDS	MSMS	HCT116MG_D190212_S4	4	476.7585144042969	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.433	1	35.047	34.547	35.547	-0.38606								0	0	0	0.8837	1	12977	12977		5.7604	0	1		+		18943	17182	11826	11883	18189	18189					0.024854810348642786
LHPKPSAHPL	10	Unmodified	_LHPKPSAHPL_					0	0	0			REV__GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant	REV__GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	366.21343994140625	3	366.213581	1095.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.743	1	19.743	19.243	20.243	0								0	0	0	0.93938	1	6863	6863		7.1017	1.3699	1		+		18944	16855	11827	11884	18190	18190					0.07492844325406622
LHPKPSAHPL	10	Unmodified	_LHPKPSAHPL_					0	0	0			REV__GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant	REV__GPR156|p.S663Hfs*141|1|0.28|ENSG00000175697|chr3:120167490-120167490|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	366.2125244140625	3	366.213581	1095.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.237	1	30.237	29.737	30.737	0								0	0	0	0.95241	1	11082	11082		4.1895	0	1		+		18945	16855	11827	11884	18191	18191					0.07492844325406622
LHPLSLRRRR	10	Unmodified	_LHPLSLRRRR_					0	0	0		ENST00000487896.2_2_2:86078353-86078431:-|nuORF	ENST00000487896.2_2_2:86078353-86078431:-|nuORF	ENST00000487896.2_2_2:86078353-86078431:-|nuORF	MSMS	HCT116MG_D190212_S2	2	652.4115600585938	2	652.412729	1302.8109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.723	1	46.612	46.112	47.112	-0.11121								0	0	0	0.96291	1	17804	17804		1.8442	0.36234	1				18946	8309	11828	11885	18192	18192					0.1716118479623674
LHQKSPHVL	9	Unmodified	_LHQKSPHVL_					0	0	0		nc|ENSG00000042813|Q9BS86-2|ZPBP;ENSG00000042813|ENST00000046087|ZPBP	nc|ENSG00000042813|Q9BS86-2|ZPBP	nc|ENSG00000042813|Q9BS86-2|ZPBP	MSMS	HCT116MG_D190212_S1	1	530.0234985351562	2	529.808908	1057.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.767	1	49.767	49.267	50.267	0								0	0	0	0.76641	1	18972	18972		13.508	4.1604	1				18947	1013	11829	11886	18193	18193					0.07676557808372309
LHQLKGVPEA	10	Unmodified	_LHQLKGVPEA_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MSMS	HCT116MG_D190212_S2	2	546.3134155273438	2	546.314023	1090.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.244	1	38.151	37.651	38.651	-0.09301								0	0	0	0.90475	1	14361	14361		14.838	6.245	1				18948	4237	11830	11887	18194	18194					0.07181120742961866
LHQLKVPTKRP	11	Unmodified	_LHQLKVPTKRP_					0	0	0		ENST00000463906.1_1_1:43630116-43636618:-|nuORF;ENSG00000117395|ENST00000236051|EBNA1BP2	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	ENST00000463906.1_1_1:43630116-43636618:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	439.27679443359375	3	439.610223	1315.80884	0.15472	6.8017E-05	1.59	0.000699	1.7448	0.00076702	439.9449716098665	53.746	0.25766	53.746	53.565	53.822	0					6	4	2	0	0	0	0.74191	1	20599	20599		2.8433	0	1	17911000			18949	2573	11831	11888	18195	18195					0.16356711267758328
LHQLNNASLI	10	Unmodified	_LHQLNNASLI_					0	0	0			REV__TRIL|p.G796Afs*4|1|0.12|ENSG00000255690|chr7:28955660-28955660|C/-|frameshift_variant	REV__TRIL|p.G796Afs*4|1|0.12|ENSG00000255690|chr7:28955660-28955660|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	561.8297119140625	2	561.81693	1121.61931	0.35382	0.00019878	1.0903	0.00061257	1.4442	0.00081135	561.8173005899324	41.118	0.19972	41.118	40.986	41.185	0					5	3	2	0	0	0	0.2916	1	15485	15485		22.736	0	1	4043000	+		18950	14396	11832	11889	18196	18196					0.06336219254626485
LHQPWNGQ	8	Unmodified	_LHQPWNGQ_					0	0	0		ENST00000497136.6_1_10:122626245-122665534:+|nuORF;WDR11|p.Q977Sfs*9|1|0.27|ENSG00000120008|chr10:120903226-120903227|-/T|frameshift_variant;WDR11|p.L1134Gfs*5|1|0.26|ENSG00000120008|chr10:120905977-120905978|CC/-|frameshift_variant;ENSG00000120008|ENST00000263461|WDR11;ENST00000604509.5_1_10:122659587-122664224:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MSMS	HCT116MG_D190212_S1	1	490.272216796875	2	490.240858	978.467164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.185	1	21.185	20.685	21.685	0								0	0	0	0.75335	1	7441	7441		26.341	10.494	1				18951	2678	11833	11890	18197	18197					-0.022931367022806626
LHQTFLLML	9	Unmodified	_LHQTFLLML_					0	0	0		ENSG00000196932|ENST00000399298|TMEM26;nc|ENSG00000196932|Q6ZUK4-2|TMEM26	ENSG00000196932|ENST00000399298|TMEM26	ENSG00000196932|ENST00000399298|TMEM26	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.7984619140625	2	558.31772	1114.62089	0.57867	0.00032308	0.1135	6.3367E-05	0.69217	0.00038645	558.3172028125682	34.429	0.20738	34.253	34.124	34.331	-0.17512					5	3	2	0	0	0	0.13948	1	12810	12810		43.858	16.229	1	12273000			18952	6106	11834	11891	18198	18198					0.06816137019018242
LHRERKKLT	9	Unmodified	_LHRERKKLT_					0	0	0			REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	MULTI-MSMS	HCT116MG_D190212_S2	2	394.24688720703125	3	394.247285	1179.72002	0.044186	1.742E-05	-0.84841	-0.00033449	-0.80423	-0.00031706	394.2467978744167	55.093	0.45759	54.905	54.714	55.171	-0.18797					21	8	3	0	0	0	0.75853	1	21232	21232		1.1933	0	1	34785000	+		18953	13189	11835	11892	18199	18199					0.13735296028130506
LHRHKRRVQHI	11	Unmodified	_LHRHKRRVQHI_					0	0	0		ENST00000597004.1_1_19:54007212-54015300:+|nuORF	ENST00000597004.1_1_19:54007212-54015300:+|nuORF	ENST00000597004.1_1_19:54007212-54015300:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	740.9500732421875	2	740.447634	1478.88072	0.70049	0.00051868	0.6303	0.0004667	1.3308	0.00098538	740.4479106002472	59.864	0.54975	59.864	59.503	60.052	0					39	21	2	0	0	0	0.74191	1	23000	23000		0	0	1	1191600			18954	9067	11836	11893	18200	18200					0.16043063464894658
LHRKALQT	8	Unmodified	_LHRKALQT_					0	0	0		ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A	ENST00000491786.5_1_2:47205894-47301059:+|nuORF	ENST00000491786.5_1_2:47205894-47301059:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	483.796142578125	2	483.795801	965.577048	0.55718	0.00026956	-0.10922	-5.2841E-05	0.44796	0.00021672	483.79574069255665	36.018	0.30974	35.89	35.709	36.019	-0.12799					9	5	2	0	0	0	0.7524	1	13467	13467		16.942	8.349	1	24315000			18955	1206	11837	11894	18201	18201					0.09288288636889774
LHRLLWLTWLP	11	Unmodified	_LHRLLWLTWLP_					0	0	0		ENST00000326765.10_1_12:12940216-12940408:+|nuORF	ENST00000326765.10_1_12:12940216-12940408:+|nuORF	ENST00000326765.10_1_12:12940216-12940408:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	724.4701538085938	2	724.432264	1446.84998	0.71884	0.00052075	0.94753	0.00068642	1.6664	0.0012072	724.4325646774945	51.588	0.72754	51.588	51.5	52.228	0					14	13	2	0	0	0	0.36565	1	19803	19803		1.3295	1.3295	1	19464000			18956	7137	11838	11895	18202	18202					0.14442472307268872
LHRLPNFSL	9	Unmodified	_LHRLPNFSL_					0	0	0			REV__ENST00000490685.1_1_9:120470560-120471008:+|nuORF	REV__ENST00000490685.1_1_9:120470560-120471008:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	366.2131652832031	3	366.213581	1095.61891	0.0073141	2.6785E-06	-0.48208	-0.00017654	-0.47477	-0.00017387	366.2132749287916	25.075	0.31305	24.969	24.839	25.152	-0.10618					7	5	2	0	0	0	0.56733	1	8971	8971		13.042	1.5478	1	4858700	+		18957	12147	11839	11896	18203	18203					0.0749284432542936
LHRLRCFSVPI	11	Unmodified	_LHRLRCFSVPI_					0	0	0			REV__ENSG00000077454|ENST00000310300|LRCH4;REV__ENST00000467201.5_1_7:100176230-100176407:-|nuORF	REV__ENSG00000077454|ENST00000310300|LRCH4	MULTI-MSMS	HCT116MG_D190212_S1	1	670.885986328125	2	670.884624	1339.7547	0.82562	0.0005539	0.79463	0.0005331	1.6202	0.001087	670.8851027105281	53.073	1.1308	53.073	52.434	53.565	0					46	21	3	0	0	0	0.74191	1	20431	20431		2.9952	0	1	26958000	+		18958	10829;15834	11840	11897	18204	18204					0.09840795844570494
LHRLRHRLQA	10	Unmodified	_LHRLRHRLQA_					0	0	0			REV__ENSG00000119574|ENST00000594051|ZBTB45	REV__ENSG00000119574|ENST00000594051|ZBTB45	MULTI-MSMS	HCT116MG_D190212_S2	2	650.3974609375	2	650.397079	1298.7796	0.6263	0.00040734	0.082426	5.361E-05	0.70872	0.00046095	650.3968704757582	54.519	1.2796	54.33	53.687	54.967	-0.1894					47	24	3	0	0	0	0.88673	1	20843	20843		1.8442	0	1	31911000	+		18959	11658	11841	11898	18205	18205					0.14216611762185494
LHRLSKVVS	9	Unmodified	_LHRLSKVVS_					0	0	0		nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF;ZFYVE26|p.P1734Lfs*10|1|0.08|ENSG00000072121|chr14:67775880-67775880|G/-|frameshift_variant;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ZFYVE26|p.D2439Efs*31|1|0.04|ENSG00000072121|chr14:67752398-67752399|-/T|frameshift_variant;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;ZFYVE26|p.D2513Mfs*3|1|0.29|ENSG00000072121|chr14:67748519-67748519|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26	nc|ENSG00000072121|Q68DK2-4|ZFYVE26	nc|ENSG00000072121|Q68DK2-4|ZFYVE26	MULTI-MSMS	HCT116MG_D190212_S1	1	519.8247680664062	2	519.824558	1037.63456	0.30316	0.00015759	0.070692	3.6747E-05	0.37385	0.00019434	519.8244547968565	60.682	0.82252	60.682	60.491	61.314	0					26	15	3	0	0	0	0.74607	1	23397	23397		2.0598	0.21551	1	116500000			18960	1263	11842	11899	18206	18206					0.11725130842478393
LHRRRLRR	8	Unmodified	_LHRRRLRR_					0	0	0			REV__ENST00000554003.1_1_12:57638697-57638930:-|nuORF	REV__ENST00000554003.1_1_12:57638697-57638930:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	581.87939453125	2	581.878856	1161.74316	0.44428	0.00025852	0.44191	0.00025714	0.88619	0.00051566	581.8791498955543	58.236	0.23973	58.236	58.173	58.413	0					5	4	2	0	0	0	0.87799	1	22468	22468		0.69038	0	1	47363000	+		18961	16442	11843	11900	18207	18207					0.16875779656129453
LHSKRKSISR	10	Unmodified	_LHSKRKSISR_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MSMS	HCT116MG_D190212_S3	3	606.3704223632812	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.215	1	44.906	44.406	45.406	-0.30927								0	0	0	0.96291	1	16923	16923		1.8442	0	1		+		18962	11459	11844	11901	18208	18208					0.12890394539795125
LHSKRKSISR	10	Unmodified	_LHSKRKSISR_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MSMS	HCT116MG_D190212_S4	4	606.3699340820312	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.07	1	44.698	44.198	45.198	-0.37287								0	0	0	0.96291	1	16613	16613		1.8442	0	1		+		18963	11459	11844	11901	18209	18209					0.12890394539795125
LHSLAKIHLL	10	Unmodified	_LHSLAKIHLL_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MSMS	HCT116MG_D190212_S2	2	382.2447814941406	3	382.244881	1143.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.379	1	27.032	26.532	27.532	-0.34723								0	0	0	0.95241	1	9942	9942		4.1895	1.1943	1		+		18964	10996	11845	11902	18210	18210					0.14670563427716843
LHSLLPEVSP	10	Unmodified	_LHSLLPEVSP_					0	0	0		nc|ENSG00000113532|Q92187-2|ST8SIA4;ST8SIA4|p.F303Lfs*8|1|0.06|ENSG00000113532|chr5:100812021-100812022|-/TGTGTAAA|frameshift_variant;ENSG00000113532|ENST00000231461|ST8SIA4	nc|ENSG00000113532|Q92187-2|ST8SIA4	nc|ENSG00000113532|Q92187-2|ST8SIA4	MULTI-SECPEP	HCT116MG_D190212_S2	2	545.7470703125	2	546.308406	1090.60226	0.45263	0.00024727	-0.41945	-0.00022915	0.033176	1.8124E-05	546.308069159481	51.252	0.25731	51.073	50.914	51.171	-0.17869					7	4	2	0	0	0	0.26542	1	19600	19600		20.454	1.1966	1	10336000			18965	2392	11846	11903	18211	18211					0.06058298648804339
LHSRDHEP	8	Unmodified	_LHSRDHEP_					0	0	0		ENST00000560725.1_1_15:52194161-52194215:+|nuORF	ENST00000560725.1_1_15:52194161-52194215:+|nuORF	ENST00000560725.1_1_15:52194161-52194215:+|nuORF	MSMS	HCT116MG_D190212_S1	1	495.74053955078125	2	495.741222	989.467892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.111	1	18.111	17.611	18.611	0								0	0	0	0.8837	1	6206	6206		6.3541	0	1				18966	8810	11847	11904	18212	18212					-0.027263420532335658
LHSVGPTA	8	Unmodified	_LHSVGPTA_					0	0	0		nc|ENSG00000141384|Q92750-2|TAF4B;ENSG00000141384|ENST00000269142|TAF4B	nc|ENSG00000141384|Q92750-2|TAF4B	nc|ENSG00000141384|Q92750-2|TAF4B	MSMS	HCT116MG_D190212_S4	4	391.2125244140625	2	391.213778	780.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.176	1	46.806	46.306	47.306	-0.37038								0	0	0	0.8837	1	17442	17442		2.8892	0	1				18967	3712	11848	11905	18213	18213					0.014012711461305116
LHTETLRTQFL	11	Unmodified	_LHTETLRTQFL_					0	0	0			REV__BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant	REV__BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	679.7921142578125	2	679.874976	1357.7354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.717	1	39.717	39.217	40.217	0								0	0	0	0.93552	1	14907	14907		13.906	0.86358	1		+		18968	10068	11849	11906	18214	18214					0.07084118034663334
LHTKRLSPG	9	Unmodified	_LHTKRLSPG_					0	0	0		ENST00000457166.5_1_7:66304900-66309725:-|nuORF	ENST00000457166.5_1_7:66304900-66309725:-|nuORF	ENST00000457166.5_1_7:66304900-66309725:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	504.2487487792969	2	504.801083	1007.58761	0.40661	0.00020526	0.38078	0.00019222	0.78739	0.00039748	505.30287902696534	18.032	0.20872	17.676	17.545	17.754	-0.35647					5	3	2	0	0	0	0.25874	1	6202	6202		11.64	0.81637	1	2602200			18969	8029	11850	11907	18215	18215					0.0841227129131994
LHTKRLSPG	9	Unmodified	_LHTKRLSPG_					0	0	0		ENST00000457166.5_1_7:66304900-66309725:-|nuORF	ENST00000457166.5_1_7:66304900-66309725:-|nuORF	ENST00000457166.5_1_7:66304900-66309725:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	504.801083	1007.58761	0.56353	0.00028447	0.24829	0.00012533	0.81181	0.0004098	504.80103455691125	17.281	0.26086	17.281	17.15	17.411	0	-0.1975	-4.6168E-05	NaN	11.64	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	929210			18970	8029	11850	11907							0.0841227129131994
LHTLLVILLI	10	Unmodified	_LHTLLVILLI_					0	0	0			REV__nc|ENSG00000138613|Q8WW43-2|APH1B	REV__nc|ENSG00000138613|Q8WW43-2|APH1B	MSMS	HCT116MG_D190212_S4	4	383.26385498046875	3	383.265282	1146.77402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.377	1	62.128	61.628	62.628	-0.24919								0	0	0	0.97045	1	23553	23553		0.15932	0	1		+		18971	12230	11851	11908	18216	18216					0.20650075407138502
LHTQEKAYK	9	Unmodified	_LHTQEKAYK_					0	0	0		ENSG00000186448|ENST00000344387|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	MULTI-SECPEP	HCT116MG_D190212_S1	1	373.08001708984375	3	373.204862	1116.59276	-0.1365	-5.0942E-05	-0.1737	-6.4827E-05	-0.3102	-0.00011577	373.20469232960266	16.135	0.20852	16.135	16.004	16.213	0					5	3	2	0	0	0	0.26413	1	5398	5398		2.4985	0	1	4584600			18972	5884	11852	11909	18217	18217					0.03912530363277256
LHVDPENFR	9	Unmodified	_LHVDPENFR_					0	0	0		ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MSMS	HCT116MG_D190212_S4	4	563.7860717773438	2	563.78563	1125.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.543	1	33.159	32.659	33.659	-0.38426								0	0	0	0.44802	1	12214	12214		31.268	13.122	1			+	18973	6480	11853	11910	18218	18218					-0.0010492681358300615
LHVDPRKSN	9	Unmodified	_LHVDPRKSN_					0	0	0		nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO	nc|ENSG00000120802|P42167-2|TMPO	nc|ENSG00000120802|P42167-2|TMPO	MULTI-MSMS	HCT116MG_D190212_S1	1	533.2940063476562	2	533.293622	1064.57269	0.58781	0.00031348	0.025278	1.3481E-05	0.61309	0.00032696	533.2936219842272	17.489	0.20882	17.489	17.359	17.568	0					5	3	2	0	0	0	0.20521	1	5980	5980		51.63	19.324	1	6240400			18974	2715	11854	11911	18219	18219					0.04298779423334054
LHVLEEDA	8	Unmodified	_LHVLEEDA_					0	0	0			REV__ENST00000530673.1_2_11:64878667-64879056:+|nuORF	REV__ENST00000530673.1_2_11:64878667-64879056:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	463.235107421875	2	463.234907	924.455261	0.2227	0.00010316	-0.14956	-6.9282E-05	0.07314	3.3881E-05	463.23487318800875	38.953	0.20697	38.868	38.754	38.961	-0.084618					6	3	2	0	0	0	0.81097	1	14678	14678		10.183	0	1	18223000	+		18975	12575	11855	11912	18220	18220					-0.00998798236150833
LHVMRCWSL	9	Unmodified	_LHVMRCWSL_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MSMS	HCT116MG_D190212_S3	3	382.1971130371094	3	382.196656	1143.56814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.704	1	34.407	33.907	34.907	-0.29707								0	0	0	0.76641	1	12784	12784		8.7454	0	1				18976	2346	11856	11913	18221	18221					0.0020985568455671455
LHVPLMPA	8	Unmodified	_LHVPLMPA_					0	0	0		ENST00000502854.5_1_5:176830573-176831380:-|nuORF;ENSG00000131187|ENST00000253496|F12;ENST00000510358.5_1_5:176831194-176831380:-|nuORF	ENST00000502854.5_1_5:176830573-176831380:-|nuORF	ENST00000502854.5_1_5:176830573-176831380:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	877.4993896484375	1	877.496421	876.489145	0.59258	0.00051999	1.2211	0.0010715	1.8137	0.0015915	877.4972891234265	48.691	0.30824	48.691	48.563	48.871	0					9	5	2	0	0	0	0.84415	1	18564	18564		6.3541	0	1	14311000			18977	3130	11857	11914	18222	18222					0.04595951721921665
LHYINPYQP	9	Unmodified	_LHYINPYQP_					0	0	0		nc|ENSG00000178773|Q9UBL6|CPNE7;ENSG00000178773|ENST00000319518|CPNE7	nc|ENSG00000178773|Q9UBL6|CPNE7	nc|ENSG00000178773|Q9UBL6|CPNE7	MSMS	HCT116MG_D190212_S4	4	382.19720458984375	3	382.197708	1143.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.467	1	31.097	30.597	31.597	-0.37026								0	0	0	0.76877	1	11422	11422		2.9952	0	1				18978	5516	11858	11915	18223	18223					0.005251453345636037
LHYKELKMKIR	11	Unmodified	_LHYKELKMKIR_					0	0	0		SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant;ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	487.293212890625	3	486.958635	1457.85407	0.13215	6.4353E-05	0.91236	0.00044428	1.0445	0.00050863	486.9591216019355	54.734	0.83669	54.438	54.034	54.87	-0.29587					31	15	3	0	0	0	0.74191	1	20733	20733		0.45452	0.45452	1	3598100			18979	4575	11859	11916	18224	18224					0.1434619373865189
LHYKELKMKIR	11	Unmodified	_LHYKELKMKIR_					0	0	0		SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant;ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	SMC6|p.D983Lfs*3|1|0.06|ENSG00000163029|chr2:17670539-17670540|-/AG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	729.9324340820312	2	729.934314	1457.85407	0.47148	0.00034415	1.1313	0.00082581	1.6028	0.00117	729.9347130673489	54.77	1.2025	54.475	53.72	54.923	-0.29587					39	22	3	0	0	0	0.74191	1	20737	20737		0.30703	0	1	5170300			18980	4575	11859	11916	18225	18225					0.1434619373865189
LIADLVGGLH	10	Unmodified	_LIADLVGGLH_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	HCT116MG_D190212_S2	2	504.29803466796875	2	504.297842	1006.58113	0.45092	0.0002274	0.29903	0.0001508	0.74995	0.0003782	504.29792481812035	55.131	0.30453	54.943	54.816	55.121	-0.18797					6	5	2	0	0	0	0.43205	1	21270	21270		39.957	1.9833	1	50195000	+		18981	13222	11860	11917	18226	18226					0.07810333339955378
LIADSETP	8	Unmodified	_LIADSETP_					0	0	0		nc|ENSG00000102524|Q9Y275-3|TNFSF13B;TNFSF13B|p.F194Lfs*18|1|0.19|ENSG00000102524|chr13:108303348-108303348|T/-|frameshift_variant;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-3|TNFSF13B	nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MSMS	HCT116MG_D190212_S1	1	423.2164611816406	2	423.216183	844.417813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.964	1	22.964	22.464	23.464	0								0	0	0	0.8837	1	8156	8156		13.508	0	1				18982	1843	11861	11918	18227	18227					-0.010618895017501018
LIADSETP	8	Unmodified	_LIADSETP_					0	0	0		nc|ENSG00000102524|Q9Y275-3|TNFSF13B;TNFSF13B|p.F194Lfs*18|1|0.19|ENSG00000102524|chr13:108303348-108303348|T/-|frameshift_variant;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-3|TNFSF13B	nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MULTI-MSMS	HCT116MG_D190212_S2	2	423.21575927734375	2	423.216183	844.417813	0.032581	1.3789E-05	1.0013	0.00042375	1.0338	0.00043754	423.21636392998084	23.517	0.25962	23.133	22.988	23.247	-0.38324					7	4	2	0	0	0	0.5791	1	8404	8404		34.187	0	1	19492000			18983	1843	11861	11918	18228	18228					-0.010618895017501018
LIAKGKGA	8	Unmodified	_LIAKGKGA_					0	0	0			REV__ENSG00000119737|ENST00000394705|GPR75	REV__ENSG00000119737|ENST00000394705|GPR75	MSMS	HCT116MG_D190212_S3	3	379.2488708496094	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.437	1	49.121	48.621	49.621	-0.31596								0	0	0	0.8837	1	18616	18616		0.69038	0	1		+		18984	11670	11862	11919	18229	18229					0.09779024939552983
LIAKRKRKRFK	11	Unmodified	_LIAKRKRKRFK_					0	0	0			REV__ZCWPW2|p.K303Sfs*25|1|0.18|ENSG00000206559|chr3:28521112-28521112|A/-|frameshift_variant	REV__ZCWPW2|p.K303Sfs*25|1|0.18|ENSG00000206559|chr3:28521112-28521112|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	722.490234375	2	722.490979	1442.96741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.325	1	58.055	57.555	58.555	-0.26932								0	0	0	0.96208	1	22185	22185		0	0	1		+		18985	14246	11863	11920	18230	18230					0.26364049966696257
LIALLQYTI	9	Unmodified	_LIALLQYTI_					0	0	0			REV__ATP8B2|p.K587Efs*10|1|0.31|ENSG00000143515|chr1:154343465-154343466|-/G|frameshift_variant	REV__ATP8B2|p.K587Efs*10|1|0.31|ENSG00000143515|chr1:154343465-154343466|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	524.3264770507812	2	524.326068	1046.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.36	1	56.177	55.677	56.677	-0.18261								0	0	0	0.42657	1	21746	21746		32.305	3.8186	1		+		18986	10011	11864	11921	18231	18231					0.116129611766155
LIARRKALLSY	11	Unmodified	_LIARRKALLSY_					0	0	0		ENST00000447467.6_1_7:95726813-95727326:+|nuORF	ENST00000447467.6_1_7:95726813-95727326:+|nuORF	ENST00000447467.6_1_7:95726813-95727326:+|nuORF	MSMS	HCT116MG_D190212_S2	2	652.4113159179688	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.638	1	41.57	41.07	42.07	-0.068199								0	0	0	0.95581	1	15740	15740		3.2813	1.6287	1				18987	7963	11865	11922	18232	18232					0.17429595410567345
LICLLPLSF	9	Unmodified	_LICLLPLSF_					0	0	0			REV__ENST00000366769.7_1_1:227505320-227505512:-|nuORF	REV__ENST00000366769.7_1_1:227505320-227505512:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	509.8038330078125	2	509.803914	1017.59328	0.50428	0.00025708	-0.15493	-7.8982E-05	0.34935	0.0001781	509.8036636860465	44.957	0.83593	44.865	44.369	45.205	-0.092472					25	15	2	0	0	0	0.64512	1	17062	17062		8.5933	0	1	17767000	+		18988	15111	11866	11923	18233	18233					0.08518233758775295
LICVPYKIC	9	Unmodified	_LICVPYKIC_					0	0	0			REV__L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|48|1|anti-sense	REV__L1MD2_dup3350|chr5:176309943-176310863:+|2.4169742649477106|0.265229905058228|3.19|483.0|48|1|anti-sense	MULTI-MSMS	HCT116MG_D190212_S2	2	1052.508544921875	1	1051.56787	1050.56059	0.65886	0.00069284	-0.69564	-0.00073152	-0.036779	-3.8676E-05	1051.5673374017993	55.283	0.15231	55.095	54.968	55.121	-0.18797					4	2	2	0	0	0	0.7005	1	21276	21276		5.2307	0	1	37592000	+		18989	16951	11867	11924	18234	18234					0.037337033642870665
LIDADPYLKY	10	Unmodified	_LIDADPYLKY_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-MSMS	HCT116MG_D190212_S2	2	605.8212280273438	2	605.821347	1209.62814	0.90684	0.00054938	0.11895	7.2061E-05	1.0258	0.00062144	605.8212962640968	46.554	0.36023	46.443	46.265	46.626	-0.11121					15	6	4	0	0	0	0.032631	1	17739	17739		100.09	65.159	1	65572000			18990	3908	11868	11925	18235	18235					0.03171148100409482
LIDKLETEL	9	Unmodified	_LIDKLETEL_					0	0	0		MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant;ENSG00000171495|ENST00000399564|MROH2B;nc|ENSG00000171495|Q7Z745-2|MROH2B	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	537.3077392578125	2	537.308072	1072.60159	0.29528	0.00015865	-0.86856	-0.00046668	-0.57328	-0.00030803	537.3074996395289	51.22	0.20596	51.22	51.091	51.297	0					5	3	2	0	0	0	0.24534	1	19594	19594		36.506	1.5741	1	20517000			18991	5199	11869	11926	18236	18236					0.0681945920907765
LIDQDARDLY	10	Unmodified	_LIDQDARDLY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S2	2	611.3091430664062	2	611.309135	1220.60372	0.42573	0.00026025	-0.32189	-0.00019677	0.10384	6.3478E-05	611.3090466528091	38.655	0.26853	38.57	38.382	38.65	-0.084618					10	4	3	0	0	0	0.031798	1	14530	14530		100.71	45.206	1	40756000			18992	5683	11870	11927	18237	18237					0.002238879469132371
LIDQDARDLY	10	Unmodified	_LIDQDARDLY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S3	3	611.3091430664062	2	611.309135	1220.60372	0.35235	0.0002154	0.21038	0.00012861	0.56273	0.000344	611.3089401863544	38.881	0.20801	38.58	38.456	38.664	-0.30137					8	3	3	0	0	0	0.10445	1	14423	14423		73.196	35.021	1	8712800			18993	5683	11870	11927	18238	18238					0.002238879469132371
LIDQDARDLY	10	Unmodified	_LIDQDARDLY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MATCH	HCT116MG_D190212_S4	4		2	611.309135	1220.60372	0.78955	0.00048266	-0.20037	-0.00012249	0.58917	0.00036017	611.3091089701952	38.946	0.15069	38.565	38.489	38.64	-0.38163	-0.0069591	-4.0128E-06	NaN	100.71	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2445500			18994	5683	11870	11927							0.002238879469132371
LIDSWCKDHSY	11	Unmodified	_LIDSWCKDHSY_					0	0	0		nc|ENSG00000131148|O43402-2|EMC8;ENSG00000131148|ENST00000253457|EMC8	nc|ENSG00000131148|O43402-2|EMC8	nc|ENSG00000131148|O43402-2|EMC8	MSMS	HCT116MG_D190212_S1	1	683.8067626953125	2	683.808445	1365.60234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.137	1	55.137	54.637	55.637	0								0	0	0	0.95113	1	21164	21164		5.7319	0.43497	1				18995	3128	11871	11928	18239	18239					-0.06584069413497673
LIDSWCKDHSY	11	Unmodified	_LIDSWCKDHSY_					0	0	0		nc|ENSG00000131148|O43402-2|EMC8;ENSG00000131148|ENST00000253457|EMC8	nc|ENSG00000131148|O43402-2|EMC8	nc|ENSG00000131148|O43402-2|EMC8	MULTI-MSMS	HCT116MG_D190212_S2	2	683.8070678710938	2	683.808445	1365.60234	0.41798	0.00028582	-1.923	-0.0013149	-1.505	-0.0010291	683.8071831263358	55.283	0.20311	55.095	54.968	55.171	-0.18797					9	3	4	0	0	0	0.73364	1	21331	21331		9.3831	2.2814	1	76622000			18996	3128	11871	11928	18240	18240					-0.06584069413497673
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF	nc|ENSG00000123349|Q99471-3|PFDN5	nc|ENSG00000123349|Q99471-3|PFDN5	MULTI-SECPEP	HCT116MG_D190212_S1	1	1000.4452514648438	1	1000.49859	999.491313	0.78077	0.00078116	-0.47632	-0.00047655	0.30445	0.0003046	1000.4983802650727	47.052	0.20685	47.052	46.907	47.114	0					6	3	2	0	0	0	0.15971	1	17887	17887		44.407	4.4497	1	9282100			18997	2796	11872	11929	18241	18241					-0.008453410592892396
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF	nc|ENSG00000123349|Q99471-3|PFDN5	nc|ENSG00000123349|Q99471-3|PFDN5	MULTI-MSMS	HCT116MG_D190212_S2	2	1000.5	1	1000.49859	999.491313	0.6961	0.00069645	0.23893	0.00023905	0.93503	0.0009355	1000.4986706058813	47.174	0.41365	47.052	46.922	47.336	-0.12175					14	7	3	0	0	0	0.043314	1	17997	17997		77.984	12.749	1	62464000			18998	2796	11872	11929	18242	18242					-0.008453410592892396
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF	nc|ENSG00000123349|Q99471-3|PFDN5	nc|ENSG00000123349|Q99471-3|PFDN5	MULTI-MSMS	HCT116MG_D190212_S3	3	1000.4989624023438	1	1000.49859	999.491313	0.43113	0.00043135	0.31501	0.00031516	0.74614	0.00074651	1000.4989380348366	47.443	0.29847	47.128	46.957	47.256	-0.31524					11	6	2	0	0	0	0.058138	1	17809	17809		70.716	5.4805	1	14453000			18999	2796	11872	11929	18243	18243					-0.008453410592892396
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		nc|ENSG00000123349|Q99471-3|PFDN5;ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF	nc|ENSG00000123349|Q99471-3|PFDN5	nc|ENSG00000123349|Q99471-3|PFDN5	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1000.49859	999.491313	0.7411	0.00074147	0.65258	0.0006529	1.3937	0.0013944	1000.499521563392	47.42	0.1018	47.05	46.981	47.083	-0.37038	-0.020577	0.00038046	NaN	77.984	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5064200			19000	2796	11872	11929							-0.008453410592892396
LIDVRRFRYPE	11	Unmodified	_LIDVRRFRYPE_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MSMS	HCT116MG_D190212_S1	1	488.6085510253906	3	488.60877	1462.80448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.541	1	42.541	42.041	43.041	0								0	0	0	0.95705	1	16048	16048		2.6312	0	1				19001	4732	11873	11930	18244	18244					0.09159202054229354
LIEATVIA	8	Unmodified	_LIEATVIA_					0	0	0		ENST00000579081.5_2_17:29626598-29701170:+|nuORF;NF1|p.F2429Qfs*7|1|0.17|ENSG00000196712|chr17:31349214-31349215|-/CAAGTAAGAATTAATT|frameshift_variant;nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	ENST00000579081.5_2_17:29626598-29701170:+|nuORF	MSMS	HCT116MG_D190212_S3	3	415.2536926269531	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.382	1	38.081	37.581	38.581	-0.30137								0	0	0	0.8837	1	14216	14216		6.3541	0	1				19002	6099	11874	11931	18245	18245					0.07456168154260467
LIELLRKREKL	11	Unmodified	_LIELLRKREKL_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1	nc|ENSG00000100425|O95696|BRD1	nc|ENSG00000100425|O95696|BRD1	MSMS	HCT116MG_D190212_S3	3	705.9600219726562	2	705.961386	1409.90822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.895	1	47.579	47.079	48.079	-0.31577								0	0	0	0.95954	1	17999	17999		1.3295	0	1				19003	1708	11875	11932	18246	18246					0.2196610916184909
LIELLYKLY	9	Unmodified	_LIELLYKLY_					0	0	0			REV__ENST00000520248.1_1_8:79672597-79674655:-|nuORF	REV__ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MSMS	HCT116MG_D190212_S1	1	584.35693359375	2	584.354825	1166.6951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.725	1	54.725	54.225	55.225	0								0	0	0	0.61599	1	20994	20994		23.148	0.41214	1		+		19004	16227	11876	11933	18247	18247					0.1184180338218539
LIESYSLSRLK	11	Unmodified	_LIESYSLSRLK_					0	0	0			REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	MSMS	HCT116MG_D190212_S4	4	654.8802490234375	2	654.879727	1307.7449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.404	1	57.109	56.609	57.609	-0.29465								0	0	0	0.95581	1	21546	21546		3.2813	1.4371	1		+		19005	10678	11877	11934	18248	18248					0.10333886320177044
LIFVLMLP	8	Unmodified	_LIFVLMLP_					0	0	0			REV__ENSG00000185231|ENST00000327606|MC2R	REV__ENSG00000185231|ENST00000327606|MC2R	MSMS	HCT116MG_D190212_S1	1	473.2938232421875	2	473.295725	944.576897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.445	1	55.445	54.945	55.945	0								0	0	0	0.8837	1	21291	21291		6.3541	0	1		+		19006	13834	11878	11935	18249	18249					0.10239152592680512
LIFWRAKW	8	Unmodified	_LIFWRAKW_					0	0	0			REV__ENSG00000100558|ENST00000216446|PLEK2	REV__ENSG00000100558|ENST00000216446|PLEK2	MSMS	HCT116MG_D190212_S3	3	560.2172241210938	2	560.326737	1118.63892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.821	1	48.505	48.005	49.005	-0.31596								0	0	0	0.8837	1	18371	18371		9.3474	0	1		+		19007	11093	11879	11936	18250	18250					0.08434640056020726
LIGQHVTA	8	Unmodified	_LIGQHVTA_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	HCT116MG_D190212_S2	2	419.7426452636719	2	419.742702	837.470852	-0.0198	-8.3107E-06	-0.075373	-3.1637E-05	-0.095173	-3.9948E-05	419.742681182798	26.891	0.15614	26.538	26.45	26.606	-0.35254					4	2	2	0	0	0	0.58007	1	9768	9768		34.102	5.0209	1	22805000			19008	3330	11880	11937	18251	18251					0.04561533071557733
LIGSSILFML	10	Unmodified	_LIGSSILFML_					0	0	0		ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF	ENST00000526443.5_1_11:14535901-14541492:-|nuORF	ENST00000526443.5_1_11:14535901-14541492:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	547.8124389648438	2	547.319928	1092.6253	0.37494	0.00020521	0.34187	0.00018711	0.71681	0.00039233	547.3199453204089	49.305	0.80954	48.94	48.457	49.266	-0.365					23	16	2	0	0	0	0.29442	1	18116	18116		14.838	0	1	5605000			19009	8590	11881	11938	18252	18252					0.08269601441929808
LIGSVRQGQ	9	Unmodified	_LIGSVRQGQ_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	HCT116MG_D190212_S1	1	479.2774353027344	2	479.277441	956.540328	0.15459	7.4093E-05	0.040973	1.9638E-05	0.19557	9.3731E-05	479.27737571230136	45.139	1.7767	45.139	44.25	46.027	0					81	33	3	0	0	0	0.71345	1	17108	17108		4.3292	0	1	47070000	+		19010	11651	11882	11939	18253	18253					0.06031992020336929
LIGTDSQAFPS	11	Unmodified	_LIGTDSQAFPS_					0	0	0		nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;SORBS1|p.A1135Qfs*17|1|0.24|ENSG00000095637|chr10:95336757-95336757|C/-|frameshift_variant;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-7|SORBS1;ENST00000474353.6_1_10:97106208-97250794:-|nuORF	nc|ENSG00000095637|Q9BX66-4|SORBS1	nc|ENSG00000095637|Q9BX66-4|SORBS1	MULTI-MSMS	HCT116MG_D190212_S2	2	568.284423828125	2	568.285128	1134.5557	0.30878	0.00017548	-1.8869	-0.0010723	-1.5781	-0.00089683	568.28411981374	15.824	0.26107	15.49	15.324	15.585	-0.33451					7	4	2	0	0	0	0.74191	1	5311	5311		5.2969	0.76802	1	1371100			19011	1611	11883	11940	18254	18254					-0.006191859731416116
LIGTDSQAFPS	11	Unmodified	_LIGTDSQAFPS_					0	0	0		nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;SORBS1|p.A1135Qfs*17|1|0.24|ENSG00000095637|chr10:95336757-95336757|C/-|frameshift_variant;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-7|SORBS1;ENST00000474353.6_1_10:97106208-97250794:-|nuORF	nc|ENSG00000095637|Q9BX66-4|SORBS1	nc|ENSG00000095637|Q9BX66-4|SORBS1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	568.285128	1134.5557	0.30878	0.00017548	-1.8869	-0.0010723	-1.5781	-0.00089683	568.28411981374	15.824	0.26107	15.49	15.324	15.585	-0.33451	0	0	NaN	5.2969	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1371100			19012	1611	11883	11940							-0.006191859731416116
LIGYPVHGFL	10	Unmodified	_LIGYPVHGFL_					0	0	0		ENSG00000164946|ENST00000380880|FREM1;FREM1|p.S839Lfs*8|1|0.23|ENSG00000164946|chr9:14819265-14819265|A/-|frameshift_variant;FREM1|p.S1085Afs*5|1|0.39|ENSG00000164946|chr9:14806682-14806682|T/-|frameshift_variant;FREM1|p.T1560Qfs*46|1|0.35|ENSG00000164946|chr9:14775969-14775969|C/-|frameshift_variant	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	HCT116MG_D190212_S2	2	558.3179321289062	2	558.316035	1114.61752	0.23834	0.00013307	1.158	0.00064652	1.3963	0.00077959	558.3169737773305	53.541	0.20559	53.351	53.223	53.429	-0.1894					8	3	3	0	0	0	0.54411	1	20617	20617		32.117	0.84863	1	21087000			19013	4736	11884	11941	18255	18255					0.06479210236648214
LIHRVCVTT	9	Unmodified	_LIHRVCVTT_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;ENST00000497317.5_1_1:155141901-155145703:-|nuORF;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MSMS	HCT116MG_D190212_S1	1	521.2989501953125	2	521.297319	1040.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.941	1	61.941	61.441	62.441	0								0	0	0	0.76973	1	23909	23909		1.8442	1.1539	1				19014	4601	11885	11942	18256	18256					0.06141795699386421
LIIALWTSV	9	Unmodified	_LIIALWTSV_					0	0	0			REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7942199707031	2	508.312961	1014.61137	0.45349	0.00023052	-0.22493	-0.00011434	0.22856	0.00011618	508.312795544975	55.962	0.15297	55.776	55.691	55.844	-0.18565					6	2	3	0	0	0	0.47829	1	21553	21553		18.135	2.2878	1	7338700	+		19015	11139	11886	11943	18257	18257					0.10464692005120924
LIIFRRLDFWI	11	Unmodified	_LIIFRRLDFWI_					0	0	0		ENST00000394235.6_1_4:140058958-140060593:-|nuORF	ENST00000394235.6_1_4:140058958-140060593:-|nuORF	ENST00000394235.6_1_4:140058958-140060593:-|nuORF	MSMS	HCT116MG_D190212_S2	2	746.4459838867188	2	746.445372	1490.87619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.341	1	52.154	51.654	52.654	-0.18725								0	0	0	0.95521	1	20104	20104		3.5965	0.8613	1				19016	7633	11887	11944	18258	18258					0.1503874147872466
LIIIIFKKQRK	11	Unmodified	_LIIIIFKKQRK_					0	0	0		nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	MSMS	HCT116MG_D190212_S2	2	467.3216247558594	3	467.321902	1398.94388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.834	1	62.705	62.205	63.205	-0.12924								0	0	0	0.96208	1	24360	24360		0	0	1				19017	9683	11888	11945	18259	18259					0.260361914095256
LIIKKGLKIIK	11	Unmodified	_LIIKKGLKIIK_					0	0	0		tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	tr|U7T3Y0|U7T3Y0_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00655PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	633.96484375	2	633.965409	1265.91626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.722	1	34.564	34.064	35.064	-0.15834								0	0	0	0.95954	1	12928	12928		1.3295	0.13619	1				19018	18612	11889	11946	18260	18260					0.293942881492967
LIILPLILLKK	11	Unmodified	_LIILPLILLKK_					0	0	0			REV__tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	REV__tr|U7SWW8|U7SWW8_FUSNUTransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01201PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	638.9700927734375	2	638.97016	1275.92577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.586	1	11.304	10.804	11.804	-0.28186								0	0	0	0.96208	1	3742	3742		0	0	1		+		19019	17860	11890	11947	18261	18261					0.2988405643484384
LIILWKNGE	9	Unmodified	_LIILWKNGE_					0	0	0		ENST00000502528.5_1_5:76728962-76747206:-|nuORF;nc|ENSG00000164253|Q9HAD4-2|WDR41;ENSG00000164253|ENST00000296679|WDR41	ENST00000502528.5_1_5:76728962-76747206:-|nuORF	ENST00000502528.5_1_5:76728962-76747206:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	542.8096923828125	2	543.321317	1084.62808	0.5844	0.00031751	0.25103	0.00013639	0.83542	0.0004539	543.823005862223	56.835	0.2114	56.656	56.528	56.739	-0.17904					9	3	4	0	0	0	0.25004	1	21900	21900		15.847	5.7733	1	12693000			19020	4686	11891	11948	18262	18262					0.08915192891095103
LIIRRLHKV	9	Unmodified	_LIIRRLHKV_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF	ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MSMS	HCT116MG_D190212_S2	2	383.2636413574219	3	383.264387	1146.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.979	1	61.843	61.343	62.343	-0.13585								0	0	0	0.77019	1	24015	24015		0.23584	0	1				19021	2974	11892	11949	18263	18263					0.20381664792830634
LIIRRLHKV	9	Unmodified	_LIIRRLHKV_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF	ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MSMS	HCT116MG_D190212_S4	4	383.2638854980469	3	383.264387	1146.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.13	1	60.87	60.37	61.37	-0.2602								0	0	0	0.76995	1	23053	23053		1.0715	0	1				19022	2974	11892	11949	18264	18264					0.20381664792830634
LIIRRLHKV	9	Unmodified	_LIIRRLHKV_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF	ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MSMS	HCT116MG_D190212_S4	4	383.263671875	3	383.264387	1146.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.751	1	61.496	60.996	61.996	-0.25457								0	0	0	0.77019	1	23304	23304		0.23584	0	1				19023	2974	11892	11949	18265	18265					0.20381664792830634
LIIWCYRYQ	9	Unmodified	_LIIWCYRYQ_					0	0	0			REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	MSMS	HCT116MG_D190212_S1	1	629.1008911132812	2	629.326076	1256.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.489	1	38.489	37.989	38.989	0								0	0	0	0.76641	1	14411	14411		13.508	1.8676	1		+		19024	13038	11893	11950	18266	18266					0.019546379049643292
LIKAVKKHN	9	Unmodified	_LIKAVKKHN_					0	0	0			REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF	REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	525.8429565429688	2	525.842751	1049.67095	0.47295	0.0002487	0.058882	3.0963E-05	0.53183	0.00027966	525.8426033388374	60.302	1.0807	60.148	59.75	60.83	-0.15441					42	20	3	0	0	0	0.76814	2	23281	23281;23537		0.52476	0	1	30010000	+		19025	9947	11894	11951	18267;18268	18267					0.1481000773917458
LIKDAKNSR	9	Unmodified	_LIKDAKNSR_					0	0	0		nc|ENSG00000186648|Q8ND23-3|CARMIL3;ENST00000559694.5_1_14:24526437-24530034:+|nuORF;ENSG00000186648|ENST00000342740|CARMIL3	nc|ENSG00000186648|Q8ND23-3|CARMIL3	nc|ENSG00000186648|Q8ND23-3|CARMIL3	MULTI-MSMS	HCT116MG_D190212_S4	4	522.9723510742188	2	522.811648	1043.60874	0.36518	0.00019092	0.049808	2.604E-05	0.41499	0.00021696	522.811551455776	52.427	1.2982	52.087	51.679	52.978	-0.34024					60	24	4	0	0	0	0.66792	1	19523	19523		7.2892	0.56607	1	33950000			19026	5901	11895	11952	18269	18269					0.08868236600164892
LIKKKRKRKKQ	11	Unmodified	_LIKKKRKRKKQ_					0	0	0			REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF	REV__ENST00000415226.1_1_2:237168173-237186074:+|nuORF	MSMS	HCT116MG_D190212_S3	3	727.511474609375	2	727.511912	1453.00927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.999	1	39.698	39.198	40.198	-0.30137								0	0	0	0.95636	1	14835	14835		2.9952	2.9952	1		+		19027	15465	11896	11953	18270	18270					0.3008860565523719
LIKKQHGALTV	11	Unmodified	_LIKKQHGALTV_					0	0	0			REV__ENSG00000182580|ENST00000330394|EPHB3	REV__ENSG00000182580|ENST00000330394|EPHB3	MSMS	HCT116MG_D190212_S1	1	403.25506591796875	3	403.255557	1206.74484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.5	1	17.5	17	18	0								0	0	0	0.95665	1	5959	5959		2.8433	0.21205	1		+		19028	13721	11897	11954	18271	18271					0.14973931110830563
LIKMLLLDVI	10	Unmodified	_LIKMLLLDVI_					0	0	0			REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MSMS	HCT116MG_D190212_S2	2	390.922119140625	3	390.922528	1169.74575	0.10478	4.096E-05	-0.28254	-0.00011045	-0.17776	-6.9491E-05	390.92233381887445	54.683	0.5624	54.494	54.201	54.764	-0.1894					23	10	3	0	0	0	0.88647	1	21048	21048		1.9064	0.57673	1	33035000	+		19029	17198	11898	11955	18272	18272					0.1676700943553442
LIKMLLLDVI	10	Unmodified	_LIKMLLLDVI_					0	0	0			REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	390.922528	1169.74575	0.10478	4.096E-05	-0.28254	-0.00011045	-0.17776	-6.9491E-05	390.92233381887445	54.683	0.5624	54.494	54.201	54.764	-0.1894	-0.050721	-6.3111E-05	NaN	1.9064	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33035000	+		19030	17198	11898	11955							0.1676700943553442
LIKMLLLDVI	10	Unmodified	_LIKMLLLDVI_					0	0	0			REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	390.922528	1169.74575	0.17526	6.8512E-05	-0.17135	-6.6984E-05	0.0039076	1.5276E-06	390.92229678127813	54.913	0.52124	54.595	54.354	54.875	-0.31775	0.050721	6.7289E-05	NaN	1.9064	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10910000	+		19031	17198	11898	11955							0.1676700943553442
LIKQMNKNFLL	11	Unmodified	_LIKQMNKNFLL_					0	0	0		ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	MSMS	HCT116MG_D190212_S1	1	454.60284423828125	3	454.603969	1360.79008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.111	1	10.111	9.6111	10.611	0								0	0	0	0.95954	1	3088	3088		1.3296	0.82369	1				19032	3474	11899	11956	18273	18273					0.12411413581730812
LIKRIIKASPE	11	Unmodified	_LIKRIIKASPE_					0	0	0		tr|U7SL83|U7SL83_FUSNU23SrRNA(Uracil-5-)-methyltransferaseRumAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01932PE=3SV=1	tr|U7SL83|U7SL83_FUSNU23SrRNA(Uracil-5-)-methyltransferaseRumAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01932PE=3SV=1	tr|U7SL83|U7SL83_FUSNU23SrRNA(Uracil-5-)-methyltransferaseRumAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01932PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	423.2750549316406	3	423.274729	1266.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.436	1	52.095	51.595	52.595	-0.34023								0	0	0	0.96121	1	19547	19547		0.45452	0	1				19033	18334	11900	11957	18274	18274					0.17962773316435232
LIKSNVPEL	9	Unmodified	_LIKSNVPEL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	HCT116MG_D190212_S2	2	505.8341369628906	2	506.8055	1011.59645	0.36173	0.00018333	0.50839	0.00025765	0.87011	0.00044098	506.80570580652244	45.507	0.30874	45.415	45.256	45.565	-0.092476					9	5	2	0	0	0	0.43775	1	17334	17334		20.454	1.0146	1	43438000			19034	660	11901	11958	18275	18275					0.0911120013714708
LIKWLEVRKVC	11	Unmodified	_LIKWLEVRKVC_					0	0	0		ENSG00000101236|ENST00000358395|RNF24;nc|ENSG00000101236|Q9Y225-2|RNF24	ENSG00000101236|ENST00000358395|RNF24	ENSG00000101236|ENST00000358395|RNF24	MSMS	HCT116MG_D190212_S3	3	693.9168701171875	2	693.918132	1385.82171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.71	1	44.401	43.901	44.901	-0.30927								0	0	0	0.95686	1	16720	16720		2.7352	0.23671	1				19035	1767	11902	11959	18276	18276					0.1442340633564072
LILDPIFKV	9	Unmodified	_LILDPIFKV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	529.3366088867188	2	529.336436	1056.65832	0.51117	0.00027058	-0.31966	-0.00016921	0.19151	0.00010137	529.336181196461	57.204	0.20802	57.025	56.895	57.103	-0.17904					5	3	2	0	0	0	0.41881	1	22107	22107		21.537	0.66577	1	22270000			19036	4945	11903	11960	18277	18277					0.13225551556274695
LILFLLLDAP	10	Unmodified	_LILFLLLDAP_					0	0	0			REV__ENST00000455309.1_1_2:112249080-112249152:+|nuORF	REV__ENST00000455309.1_1_2:112249080-112249152:+|nuORF	MSMS	HCT116MG_D190212_S3	3	564.3590698242188	2	564.357368	1126.70018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.62	1	51.308	50.808	51.808	-0.31166								0	0	0	0.93576	1	19494	19494		7.9102	3.1541	1		+		19037	15741	11904	11961	18278	18278					0.14190107244803585
LILIILKLY	9	Unmodified	_LILIILKLY_					0	0	0		ENST00000446265.3_1:149647111-149647681:+|nuORF	ENST00000446265.3_1:149647111-149647681:+|nuORF	ENST00000446265.3_1:149647111-149647681:+|nuORF	MSMS	HCT116MG_D190212_S2	2	551.310791015625	2	551.385929	1100.7573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.145	1	48.012	47.512	48.512	-0.13281								0	0	0	0.77008	1	18385	18385		0.6015	0.6015	1				19038	7954	11905	11962	18279	18279					0.21095574521177696
LILILVKTYS	10	Unmodified	_LILILVKTYS_					0	0	0			REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	REV__tr|U7SJ11|U7SJ11_FUSNUKAPNTPasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02055PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	388.254150390625	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.988	1	39.686	39.186	40.186	-0.30137								0	0	0	0.97054	1	14830	14830		0.13989	0.04505	1		+		19039	17686	11906	11963	18280	18280					0.1628977879058766
LILKIKLKIK	10	Unmodified	_LILKIKLKIK_					0	0	0			REV__METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant	REV__METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	605.4524536132812	2	605.454677	1208.8948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.724	1	14.564	14.064	15.064	-0.16089								0	0	0	0.96937	1	4689	4689		0.40072	0.40072	1		+		19040	17022	11907	11964	18281	18281					0.29870903120581715
LILKRYKKVK	10	Unmodified	_LILKRYKKVK_					0	0	0			REV__ATAD2B|p.T1377Rfs*19|1|0.39|ENSG00000119778|chr2:23754724-23754724|T/-|frameshift_variant	REV__ATAD2B|p.T1377Rfs*19|1|0.39|ENSG00000119778|chr2:23754724-23754724|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.3010559082031	3	430.299097	1287.87546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.61	1	46.296	45.796	46.796	-0.31368								0	0	0	0.97054	1	17481	17481		0.13989	0.13989	1		+		19041	10000	11908	11965	18282	18282					0.24303946829672896
LILLILLVPD	10	Unmodified	_LILLILLVPD_					0	0	0		nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	MSMS	HCT116MG_D190212_S3	3	561.0821533203125	2	561.380843	1120.74713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.592	1	49.276	48.776	49.776	-0.31596								0	0	0	0.96453	1	18678	18678		1.4819	1.0812	1				19042	5674	11909	11966	18283	18283					0.19158966795953347
LILLKAVKKT	10	Unmodified	_LILLKAVKKT_					0	0	0		ENST00000503752.5_1_4:185578328-185580527:+|nuORF	ENST00000503752.5_1_4:185578328-185580527:+|nuORF	ENST00000503752.5_1_4:185578328-185580527:+|nuORF	MSMS	HCT116MG_D190212_S2	2	376.267333984375	3	376.268915	1125.78492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.194	1	10.913	10.413	11.413	-0.28186								0	0	0	0.97061	1	3593	3593		0.12286	0.12286	1				19043	8436	11910	11967	18284	18284					0.22705477781391892
LILVQQLPGAP	11	Unmodified	_LILVQQLPGAP_					0	0	0		ENST00000456143.1_22:16404699-16405137:+|nuORF	ENST00000456143.1_22:16404699-16405137:+|nuORF	ENST00000456143.1_22:16404699-16405137:+|nuORF	MSMS	HCT116MG_D190212_S4	4	574.8570556640625	2	574.855524	1147.69649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.983	1	36.598	36.098	37.098	-0.38486								0	0	0	0.94924	1	13555	13555		6.7232	0	1				19044	8024	11911	11968	18285	18285					0.12855437470943798
LILVWLKIEIW	11	Unmodified	_LILVWLKIEIW_					0	0	0		ENST00000344922.9_2_1:222803542-222803581:+|nuORF	ENST00000344922.9_2_1:222803542-222803581:+|nuORF	ENST00000344922.9_2_1:222803542-222803581:+|nuORF	MSMS	HCT116MG_D190212_S1	1	713.44775390625	2	713.447049	1424.87954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.328	1	60.328	59.828	60.828	0								0	0	0	0.95954	1	23253	23253		1.3295	0.25807	1				19045	7256	11912	11969	18286	18286					0.18409991532735148
LILWQHLP	8	Unmodified	_LILWQHLP_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-SECPEP	HCT116MG_D190212_S3	3	509.80377197265625	2	510.30547	1018.59639	0.19819	0.00010114	0.11449	5.8425E-05	0.31268	0.00015956	510.30551510340933	45.329	0.31324	45.018	44.939	45.253	-0.31094					7	5	2	0	0	0	0.33021	1	16939	16939		5.7604	0	1	1932000			19046	5569	11913	11970	18287	18287					0.08783244927803935
LINEWLALK	9	Unmodified	_LINEWLALK_					0	0	0			REV__APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant	REV__APOB|p.G1921Efs*13|1|0.19|ENSG00000084674|chr2:21011106-21011106|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	367.22271728515625	3	367.221853	1098.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5925	1	2.6478	2.1478	3.1478	0.055284								0	0	0	0.76973	1	786	786		0.96228	0.26461	1		+		19047	9965	11914	11971	18288	18288					0.09835479408116043
LINRRDEDIFR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LINRRDEDIFR_					1	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000553557.5_1_X:53113753-53114504:+|nuORF;ENST00000556808.1_1_X:53112313-53114116:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MSMS	HCT116MG_D190212_S1	1	744.8999633789062	2	744.899514	1487.78447	0.90939	0.0006774	0.65721	0.00048956	1.5666	0.001167	744.8995485250346	41.263	0.31258	41.263	41.081	41.393	0					12	5	3	0	0	0	0.52297	1	15535	15535		43.982	27.833	1	34869000			19048	5761	11915	11972	18289	18289					0.06009406323596522
LINRRDEDIFR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LINRRDEDIFR_					1	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000553557.5_1_X:53113753-53114504:+|nuORF;ENST00000556808.1_1_X:53112313-53114116:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MSMS	HCT116MG_D190212_S3	3	744.8997802734375	2	744.899514	1487.78447	0.25895	0.00019289	0.5148	0.00038347	0.77375	0.00057637	745.4019322678181	41.533	0.15947	41.231	41.1	41.259	-0.30257					12	8	2	0	0	0	0.52297	1	15436	15436		43.982	26.869	1	26067000			19049	5761	11915	11972	18290	18290					0.06009406323596522
LINRRDEDIFR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LINRRDEDIFR_					1	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000553557.5_1_X:53113753-53114504:+|nuORF;ENST00000556808.1_1_X:53112313-53114116:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	744.899514	1487.78447	0.90939	0.0006774	0.65721	0.00048956	1.5666	0.001167	744.8995485250346	41.263	0.31258	41.263	41.081	41.393	0	0.016312	0.00011772	NaN	43.982	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34869000			19050	5761	11915	11972							0.06009406323596522
LINRRDEDIFR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LINRRDEDIFR_					1	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000553557.5_1_X:53113753-53114504:+|nuORF;ENST00000556808.1_1_X:53112313-53114116:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	744.899514	1487.78447	0.25895	0.00019289	0.5148	0.00038347	0.77375	0.00057637	745.4019322678181	41.533	0.15947	41.231	41.1	41.259	-0.30257	-0.016312	-9.4445E-05	NaN	43.982	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26067000			19051	5761	11915	11972							0.06009406323596522
LIPLIVIPVV	10	Unmodified	_LIPLIVIPVV_					0	0	0		ENSG00000122679|ENST00000242249|RAMP3	ENSG00000122679|ENST00000242249|RAMP3	ENSG00000122679|ENST00000242249|RAMP3	MSMS	HCT116MG_D190212_S4	4	359.1913757324219	3	359.254494	1074.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.453	1	36.067	35.567	36.567	-0.38558								0	0	0	0.96769	1	13340	13340		0.77653	0.61721	1				19052	2777	11916	11973	18291	18291					0.2072728800412733
LIPLLLALK	9	Unmodified	_LIPLLLALK_					0	0	0		nc|ENSG00000253649|A0A1B0GVH4|PRSS51;ENSG00000253649|ENST00000647727|PRSS51	nc|ENSG00000253649|A0A1B0GVH4|PRSS51	nc|ENSG00000253649|A0A1B0GVH4|PRSS51	MSMS	HCT116MG_D190212_S3	3	497.3575134277344	2	497.357171	992.699789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.088	1	14.163	13.663	14.663	0.074899								0	0	0	0.77025	1	4511	4511		0	0	1				19053	6589	11917	11974	18292	18292					0.20314732315580386
LIQAMMVCMT	10	Unmodified	_LIQAMMVCMT_					0	0	0			REV__DNAJC28|p.Y5C|1|0.15|ENSG00000177692|chr21:33489380-33489380|T/C|missense_variant	REV__DNAJC28|p.Y5C|1|0.15|ENSG00000177692|chr21:33489380-33489380|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1140.529052734375	1	1140.52839	1139.52111	0.39453	0.00044997	-0.035621	-4.0626E-05	0.35891	0.00040935	1140.528202132782	15.814	0.93691	15.899	15.352	16.289	0.085423					35	17	3	0	0	0	0.88752	1	5293	5293		1.6526	0	1	8665000	+		19054	10393	11918	11975	18293	18293					-0.043065079731150036
LIQAMMVCMT	10	Unmodified	_LIQAMMVCMT_					0	0	0			REV__DNAJC28|p.Y5C|1|0.15|ENSG00000177692|chr21:33489380-33489380|T/C|missense_variant	REV__DNAJC28|p.Y5C|1|0.15|ENSG00000177692|chr21:33489380-33489380|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1140.5279541015625	1	1140.52839	1139.52111	-0.14325	-0.00016339	0.72521	0.00082712	0.58195	0.00066373	1140.5287874117935	15.805	0.94271	15.643	15.028	15.971	-0.16173					30	18	3	0	0	0	0.88752	1	5170	5170		1.6526	0	1	5138100	+		19055	10393	11918	11975	18294	18294					-0.043065079731150036
LIRAPTLTP	9	Unmodified	_LIRAPTLTP_					0	0	0		ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	MSMS	HCT116MG_D190212_S1	1	491.32177734375	2	491.30821	980.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.679	1	61.679	61.179	62.179	0								0	0	0	0.76923	1	23803	23803		3.5965	0	1				19056	2042	11919	11976	18295	18295					0.11078923719594513
LIRKKKRYRI	10	Unmodified	_LIRKKKRYRI_					0	0	0			REV__SP140|p.F779Lfs*17|1|0.23|ENSG00000079263|chr2:230311202-230311202|T/-|frameshift_variant	REV__SP140|p.F779Lfs*17|1|0.23|ENSG00000079263|chr2:230311202-230311202|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	687.655517578125	2	687.46443	1372.91431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.674	1	37.674	37.174	38.174	0								0	0	0	0.95179	1	14083	14083		4.3292	2.8473	1		+		19057	10848	11920	11977	18296	18296					0.24276672184055315
LIRLERFNEIK	11	Unmodified	_LIRLERFNEIK_					0	0	0			REV__ENSG00000240720|ENST00000458448|LRRD1	REV__ENSG00000240720|ENST00000458448|LRRD1	MSMS	HCT116MG_D190212_S1	1	715.9285888671875	2	715.927543	1429.84053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.447	1	32.447	31.947	32.947	0								0	0	0	0.94145	1	11974	11974		10.8	0.72558	1		+		19058	14351	11921	11978	18297	18297					0.14280659231053505
LIRRLFYIFLF	11	Unmodified	_LIRRLFYIFLF_					0	0	0			REV__AluSx1_dup108546|chr19:48960184-48960360:-|1.1583690759143794|0.0026454172374457|8.77|474.0|12|3|anti-sense	REV__AluSx1_dup108546|chr19:48960184-48960360:-|1.1583690759143794|0.0026454172374457|8.77|474.0|12|3|anti-sense	MSMS	HCT116MG_D190212_S2	2	750.9561157226562	2	750.958115	1499.90168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.855	1	49.691	49.191	50.191	-0.16369								0	0	0	0.95581	1	19093	19093		3.2813	1.9518	1		+		19059	9930	11922	11979	18298	18298					0.17172216001154084
LIRRYFQKRAF	11	Unmodified	_LIRRYFQKRAF_					0	0	0		ENST00000256495.3_1_3:5025736-5025934:+|nuORF	ENST00000256495.3_1_3:5025736-5025934:+|nuORF	ENST00000256495.3_1_3:5025736-5025934:+|nuORF	MSMS	HCT116MG_D190212_S4	4	749.4451293945312	2	749.443695	1496.87284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.831	1	54.511	54.011	55.011	-0.3203								0	0	0	0.95925	1	20513	20513		1.4819	0	1				19060	6823	11923	11980	18299	18299					0.14427491424726213
LIRSHNLEVP	10	Unmodified	_LIRSHNLEVP_					0	0	0		NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant	NAV3|p.T2082Qfs*22|1|0.13|ENSG00000067798|chr12:78190166-78190166|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	589.33544921875	2	589.33803	1176.66151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.252	1	57.073	56.573	57.573	-0.17904								0	0	0	0.94339	1	22103	22103		6.2058	0.9089	1				19061	1191	11924	11981	18300	18300					0.08024194662993978
LIRVYRAL	8	Unmodified	_LIRVYRAL_					0	0	0			REV__ENST00000560937.1_1_15:89442628-89444976:-|nuORF	REV__ENST00000560937.1_1_15:89442628-89444976:-|nuORF	MSMS	HCT116MG_D190212_S2	2	502.3238525390625	2	502.324194	1002.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.176	1	41.108	40.608	41.608	-0.068199								0	0	0	0.8837	1	15550	15550		11.114	4.7604	1		+		19062	12302	11925	11982	18301	18301					0.13262336193406554
LIRWKLITPQK	11	Unmodified	_LIRWKLITPQK_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	MSMS	HCT116MG_D190212_S3	3	698.2977294921875	2	698.445372	1394.87619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.527	1	47.211	46.711	47.711	-0.31525								0	0	0	0.95636	1	17850	17850		2.9952	2.6446	1		+		19063	13506	11926	11983	18302	18302					0.1945474147873938
LISDERINYPQ	11	Unmodified	_LISDERINYPQ_					0	0	0			REV__ENSG00000181045|ENST00000361193|SLC26A11	REV__ENSG00000181045|ENST00000361193|SLC26A11	MSMS	HCT116MG_D190212_S4	4	674.3512573242188	2	674.348791	1346.68303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.704	1	32.325	31.825	32.825	-0.37924								0	0	0	0.94538	1	11922	11922		8.7454	0.58988	1		+		19064	13680	11927	11984	18303	18303					0.02355534901039391
LISEMVKNV	9	Unmodified	_LISEMVKNV_					0	0	0			REV__ANKRD62|p.L785Cfs*20|1|0.67|ENSG00000181626|chr18:12126174-12126174|T/-|frameshift_variant	REV__ANKRD62|p.L785Cfs*20|1|0.67|ENSG00000181626|chr18:12126174-12126174|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7914428710938	2	516.791535	1031.56852	0.44288	0.00022888	-0.48901	-0.00025272	-0.04613	-2.384E-05	516.791240654287	44.54	0.26319	44.455	44.376	44.639	-0.084797					5	4	2	0	0	0	0.1037	1	16951	16951		57.471	1.9686	1	19808000	+		19065	9948	11928	11985	18304	18304					0.05399553885399655
LISLITIIKKI	11	Unmodified	_LISLITIIKKI_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	418.9638671875	3	418.963492	1253.86865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.116	1	12.116	11.616	12.616	0								0	0	0	0.96208	1	3867	3867		0	0	1				19066	18431	11929	11986	18305	18305					0.2518658915848846
LISLITIIKKI	11	Unmodified	_LISLITIIKKI_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	418.96429443359375	3	418.963492	1253.86865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.663	1	12.663	12.163	13.163	0								0	0	0	0.96208	1	4076	4076		0	0	1				19067	18431	11929	11986	18306	18306					0.2518658915848846
LISLITIIKKI	11	Unmodified	_LISLITIIKKI_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	418.9638366699219	3	418.963492	1253.86865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.254	1	13.254	12.754	13.754	0								0	0	0	0.96208	1	4297	4297		0	0	1				19068	18431	11929	11986	18307	18307					0.2518658915848846
LISRRRKWFEL	11	Unmodified	_LISRRRKWFEL_					0	0	0			REV__ANO3|p.I617Lfs*8|1|0.05|ENSG00000134343|chr11:26624469-26624469|A/-|frameshift_variant	REV__ANO3|p.I617Lfs*8|1|0.05|ENSG00000134343|chr11:26624469-26624469|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	752.450439453125	2	752.448977	1502.8834	0.94188	0.00070872	0.48905	0.00036799	1.4309	0.0010767	752.4494831910408	54.175	0.77238	53.986	53.429	54.201	-0.1894					22	14	2	0	0	0	0.74191	1	20877	20877		1.3295	0.13619	1	30050000	+		19069	9950	11930	11987	18308	18308					0.15207474079147687
LISTLMPIFL	10	Unmodified	_LISTLMPIFL_					0	0	0		nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.Q904Sfs*9|4|0.29|ENSG00000125107|chr16:58555436-58555436|A/-|frameshift_variant	nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-3|CNOT1	MSMS	HCT116MG_D190212_S2	2	574.3441772460938	2	574.343403	1146.67225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.283	1	43.21	42.71	43.71	-0.073376								0	0	0	0.85468	1	16407	16407		21.747	6.9084	1				19070	2873	11931	11988	18309	18309					0.10478460993044791
LISTPFRTP	9	Unmodified	_LISTPFRTP_					0	0	0		ENST00000480110.5_1_6:26452319-26452391:+|nuORF	ENST00000480110.5_1_6:26452319-26452391:+|nuORF	ENST00000480110.5_1_6:26452319-26452391:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	516.7935180664062	2	516.297842	1030.58113	0.18952	9.7849E-05	0.15838	8.1769E-05	0.3479	0.00017962	516.2978193641488	48.24	0.61817	48.24	47.944	48.563	0					26	11	3	0	0	0	0.21474	1	18237	18237		12.241	0	1	65813000			19071	8234	11932	11989	18310	18310					0.06706333339934645
LISVSAINLF	10	Unmodified	_LISVSAINLF_					0	0	0		ENST00000510863.1_1_4:77028861-77033669:+|nuORF;nc|ENSG00000156219|Q13508-2|ART3;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3	ENST00000510863.1_1_4:77028861-77033669:+|nuORF	ENST00000510863.1_1_4:77028861-77033669:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	538.8211059570312	2	538.82115	1075.62775	0.65334	0.00035203	-0.1626	-8.7611E-05	0.49074	0.00026442	538.8211690246542	51.925	0.3608	51.742	51.629	51.99	-0.18369					8	6	2	0	0	0	0.30623	1	19976	19976		49.933	0.37871	1	13502000			19072	4277	11933	11990	18311	18311					0.0929577317122039
LITDSCQLRP	10	Unmodified	_LITDSCQLRP_					0	0	0			REV__ENST00000380860.8_1_5:68399938-68400088:+|nuORF	REV__ENST00000380860.8_1_5:68399938-68400088:+|nuORF	MSMS	HCT116MG_D190212_S4	4	573.3037109375	2	573.302798	1144.59104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.48	1	61.219	60.719	61.719	-0.2602								0	0	0	0.95507	1	23194	23194		3.5965	0.31518	1		+		19073	15273	11934	11991	18312	18312					0.024531532830224023
LITLDSVLQTF	11	Unmodified	_LITLDSVLQTF_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.I3485Lfs*10|1|0.24|ENSG00000151835|chr13:23333423-23333423|T/-|frameshift_variant	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S1	1	625.3570556640625	2	625.355554	1248.69655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.247	1	52.247	51.747	52.747	0								0	0	0	0.94755	1	19979	19979		7.609	1.4032	1				19074	4129	11935	11992	18313	18313					0.08215392680290279
LITLIEAIRLY	11	Unmodified	_LITLIEAIRLY_					0	0	0		ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF;ENSG00000186889|ENST00000335390|TMEM17	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	ENST00000479763.5_1_2:62729532-62738946:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	439.943115234375	3	439.942868	1316.80677	0.087288	3.8402E-05	0.041922	1.8443E-05	0.12921	5.6845E-05	439.94289179874795	52.602	0.61726	52.602	52.125	52.742	0					23	11	3	0	0	0	0.74191	1	20101	20101		2.6312	0.19645	1	89827000			19075	5915	11936	11993	18314	18314					0.16104237739318705
LITQNRGSL	9	Unmodified	_LITQNRGSL_					0	0	0			REV__sp|P16772|UL130_HCMVAUncharacterizedproteinUL130OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL130PE=1SV=1	REV__sp|P16772|UL130_HCMVAUncharacterizedproteinUL130OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL130PE=1SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2915954589844	2	501.290548	1000.56654	0.58738	0.00029445	0.012854	6.4435E-06	0.60023	0.00030089	501.2903552549938	46.311	2.0088	46.199	45.7	47.709	-0.11122					75	38	4	0	0	0	0.59184	1	18008	18008		11.64	0	1	35217000	+		19076	17554	11937	11994	18315	18315					0.06628261191815454
LITSLGRHRK	10	Unmodified	_LITSLGRHRK_					0	0	0		ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	MULTI-MSMS	HCT116MG_D190212_S2	2	590.86669921875	2	590.867289	1179.72002	0.59067	0.00034901	-0.59778	-0.00035321	-0.0071083	-4.2001E-06	590.8666875833958	55.089	0.61128	54.901	54.611	55.222	-0.18797					38	11	4	0	0	0	0.88647	1	21208	21208		1.6526	0	1	145600000			19077	5852	11938	11995	18316	18316					0.13735296028107769
LITSLGRHRK	10	Unmodified	_LITSLGRHRK_					0	0	0		ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	MULTI-MATCH	HCT116MG_D190212_S1	1		2	590.867289	1179.72002	0.7261	0.00042903	-1.2812	-0.000757	-0.55507	-0.00032797	590.8665627457682	54.83	0.50867	54.83	54.587	55.095	0	-0.10672	-0.00054179	NaN	1.6526	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15973000			19078	5852	11938	11995							0.13735296028107769
LITSLGRHRK	10	Unmodified	_LITSLGRHRK_					0	0	0		ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	590.867289	1179.72002	0.59067	0.00034901	-0.59778	-0.00035321	-0.0071083	-4.2001E-06	590.8666875833958	55.089	0.61128	54.901	54.611	55.222	-0.18797	-0.035773	0.0002658	NaN	1.6526	38	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145600000			19079	5852	11938	11995							0.13735296028107769
LIVCILEI	8	Unmodified	_LIVCILEI_					0	0	0			REV__SLC16A6|p.F392Lfs*8|1|0.23|ENSG00000108932|chr17:68270984-68270984|A/-|frameshift_variant	REV__SLC16A6|p.F392Lfs*8|1|0.23|ENSG00000108932|chr17:68270984-68270984|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	458.2845458984375	2	458.282815	914.551076	0.00098051	4.4935E-07	2.5793	0.0011821	2.5803	0.0011825	458.28360365797084	37.292	0.35929	37.189	37.026	37.385	-0.10318					11	6	3	0	0	0	0.2535	1	13987	13987		63.394	3.5985	1	29797000	+		19080	11360	11939	11996	18317	18317					0.09038258350392425
LIVTPSLMNK	10	Unmodified	_LIVTPSLMNK_					0	0	0			REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	REV__tr|U7SIR8|U7SIR8_FUSNUATP-dependenthelicaseIRC3OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02152PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	558.328857421875	2	558.328285	1114.64202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.065	1	47.065	46.565	47.565	0								0	0	0	0.90475	1	17873	17873		14.838	3.198	1		+		19081	17682	11940	11997	18318	18318					0.08928102327877241
LIVVGHTA	8	Unmodified	_LIVVGHTA_					0	0	0		ENST00000577848.1_1_18:3654744-3655653:+|nuORF	ENST00000577848.1_1_18:3654744-3655653:+|nuORF	ENST00000577848.1_1_18:3654744-3655653:+|nuORF	MSMS	HCT116MG_D190212_S1	1	405.2455749511719	2	405.247621	808.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.971	1	47.971	47.471	48.471	0								0	0	0	0.8837	1	18241	18241		0.69038	0	1				19082	8938	11941	11998	18319	18319					0.06878721076930105
LIYRKMRI	8	Unmodified	_LIYRKMRI_					0	0	0			REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MSMS	HCT116MG_D190212_S1	1	546.8413696289062	2	546.839154	1091.66375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.924	1	53.924	53.424	54.424	0								0	0	0	0.8837	1	20664	20664		2.3027	0.24298	1		+		19083	12497	11942	11999	18320	18320					0.12158951867104406
LKAKKPQKRKP	11	Unmodified	_LKAKKPQKRKP_					0	0	0		ENST00000464696.2_1_12:83545187-83545313:+|nuORF	ENST00000464696.2_1_12:83545187-83545313:+|nuORF	ENST00000464696.2_1_12:83545187-83545313:+|nuORF	MSMS	HCT116MG_D190212_S3	3	441.297607421875	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.983	1	13.052	12.552	13.552	0.069158								0	0	0	0.9619	1	4089	4089		0.094841	0	1				19084	8083	11943	12000	18321	18321					0.22417277055819795
LKASEKDIAP	10	Unmodified	_LKASEKDIAP_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000576862.5_1_17:5290923-5298221:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	HCT116MG_D190212_S4	4	536.5875854492188	2	536.305864	1070.59717	0.13703	7.3492E-05	0.3265	0.0001751	0.46354	0.0002486	536.305961926143	17.577	0.36338	17.407	17.225	17.588	-0.17047					8	6	2	0	0	0	0.83158	1	5791	5791		9.3831	0.63772	1	6046700			19085	2167	11944	12001	18322	18322					0.06469994786198185
LKAVFGLV	8	Unmodified	_LKAVFGLV_					0	0	0			REV__ENSG00000177383|ENST00000317897|MAGEF1	REV__ENSG00000177383|ENST00000317897|MAGEF1	MSMS	HCT116MG_D190212_S4	4	424.25433349609375	2	423.776014	845.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.997	1	56.697	56.197	57.197	-0.3004								0	0	0	0.8837	1	21382	21382		0.79363	0	1		+		19086	13569	11945	12002	18323	18323					0.10852768633480991
LKAVPSQKRT	10	Unmodified	_LKAVPSQKRT_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	HCT116MG_D190212_S1	1	564.3485107421875	2	564.348397	1126.68224	0.39701	0.00022405	-0.05895	-3.3268E-05	0.33806	0.00019079	564.3483425107646	15.562	0.1562	15.562	15.484	15.64	0					4	2	2	0	0	0	0.69766	1	5201	5201		20.581	6.1756	1	6621500			19087	4586	11946	12003	18324	18324					0.12396785042665215
LKAVPSQKRT	10	Unmodified	_LKAVPSQKRT_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	HCT116MG_D190212_S1	1	376.5677490234375	3	376.568024	1126.68224	-0.097244	-3.6619E-05	0.16219	6.1076E-05	0.064948	2.4457E-05	376.5678018584304	15.562	0.1562	15.562	15.484	15.64	0					6	2	3	0	0	0	0.69766	1	5203	5203		23.016	8.7975	1	3955100			19088	4586	11946	12003	18325	18325					0.12396785042665215
LKDRLLKFLY	10	Unmodified	_LKDRLLKFLY_					0	0	0		tr|U7T340|U7T340_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00378PE=4SV=1	tr|U7T340|U7T340_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00378PE=4SV=1	tr|U7T340|U7T340_FUSNUCRP/FNRfamilytranscriptionalregulator,anaerobicregulatoryproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00378PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	654.9070434570312	2	654.905548	1307.79654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.041	1	47.041	46.541	47.541	0								0	0	0	0.88261	1	17863	17863		18.146	1.9972	1				19089	18587	11947	12004	18326	18326					0.15495674804765258
LKEEKRNKSKK	11	Unmodified	_LKEEKRNKSKK_					0	0	0		ENST00000546847.5_1_12:49315769-49317670:-|nuORF;ENSG00000134285|ENST00000550765|FKBP11	ENST00000546847.5_1_12:49315769-49317670:-|nuORF	ENST00000546847.5_1_12:49315769-49317670:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	463.283203125	3	463.284175	1386.8307	0.39501	0.000183	-0.85405	-0.00039567	-0.45903	-0.00021266	463.2836634791173	52.071	0.77355	51.887	51.629	52.403	-0.18368					29	14	3	0	0	0	0.74191	1	19972	19972		0.40827	0.40827	1	16025000			19090	3276	11948	12005	18327	18327					0.15275471225686488
LKEEVKRLWGL	11	Unmodified	_LKEEVKRLWGL_					0	0	0		RBBP8NL|p.R126W|1|0.62|ENSG00000130701|chr20:62416174-62416174|G/A|missense_variant	RBBP8NL|p.R126W|1|0.62|ENSG00000130701|chr20:62416174-62416174|G/A|missense_variant	RBBP8NL|p.R126W|1|0.62|ENSG00000130701|chr20:62416174-62416174|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	685.9093627929688	2	685.911362	1369.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.331	1	50.331	49.831	50.831	0								0	0	0	0.95636	1	19202	19202		2.9952	0	1				19091	9805	11949	12006	18328	18328					0.13805871828071759
LKEEYMEELL	10	Unmodified	_LKEEYMEELL_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MSMS	HCT116MG_D190212_S4	4	432.8850402832031	3	432.884578	1295.63191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.937	1	61.682	61.182	62.182	-0.25457								0	0	0	0.96836	1	23379	23379		0.62683	0	1		+		19092	11473	11950	12007	18329	18329					-0.004085501880126685
LKEFYILWTKI	11	Unmodified	_LKEFYILWTKI_					0	0	0		nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2;ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;ENST00000472601.5_1_1:223957560-223960168:+|nuORF	nc|ENSG00000162909|P17655-2|CAPN2	nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	HCT116MG_D190212_S1	1	485.2860412597656	3	485.286634	1452.83807	0.34486	0.00016736	-0.85365	-0.00041426	-0.50878	-0.0002469	485.28613166034825	53.385	0.92621	53.385	52.742	53.668	0					20	17	2	0	0	0	0.74191	1	20329	20329		1.0136	1.0136	1	22781000			19093	4567	11951	12008	18330	18330					0.1297681077339803
LKEGTRLKL	9	Unmodified	_LKEGTRLKL_					0	0	0			REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF	REV__ENST00000563306.5_1_16:46729840-46730008:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	529.33984375	2	529.340041	1056.66553	0.22685	0.00012008	-0.62331	-0.00032994	-0.39646	-0.00020986	529.3396690055581	58.236	0.22718	58.236	58.135	58.362	0					7	4	2	0	0	0	0.71996	1	22465	22465		6.2058	0	1	35887000	+		19094	16508	11952	12009	18331	18331					0.13946284156691036
LKEITTKV	8	Unmodified	_LKEITTKV_					0	0	0		nc|ENSG00000162946|Q9NRI5-9|DISC1;nc|ENSG00000162946|Q9NRI5-3|DISC1;nc|ENSG00000162946|Q9NRI5-8|DISC1;DISC1|p.R735Gfs*12|1|0.33|ENSG00000162946|chr1:232008939-232008939|C/-|frameshift_variant;nc|ENSG00000162946|Q9NRI5-5|DISC1;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;nc|ENSG00000162946|Q9NRI5-2|DISC1;ENSG00000162946|ENST00000439617|DISC1	nc|ENSG00000162946|Q9NRI5-9|DISC1	nc|ENSG00000162946|Q9NRI5-9|DISC1	MSMS	HCT116MG_D190212_S1	1	466.2938232421875	2	466.294768	930.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.159	1	47.159	46.659	47.659	0								0	0	0	0.8837	1	17911	17911		2.3027	0	1				19095	679	11953	12010	18332	18332					0.10691815108407354
LKEKKRERKT	10	Unmodified	_LKEKKRERKT_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S4	4	658.411865234375	2	658.41206	1314.80957	0.70669	0.0004653	-0.61472	-0.00040474	0.091974	6.0556E-05	658.4113790290253	54.761	0.52113	54.438	54.192	54.713	-0.32348					16	9	3	0	0	0	0.88346	1	20492	20492		4.897	2.3985	1	3490700			19096	5492	11954	12011	18333	18333					0.16475505916810107
LKEKKRERKT	10	Unmodified	_LKEKKRERKT_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	658.41206	1314.80957	0.51713	0.00034048	-0.68627	-0.00045185	-0.16914	-0.00011136	658.4114318898736	54.554	0.81855	54.365	53.996	54.815	-0.18939	-0.036436	-2.9924E-05	NaN	4.897	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110960000			19097	5492	11954	12011							0.16475505916810107
LKEKLIWRFPW	11	Unmodified	_LKEKLIWRFPW_					0	0	0			REV__SNW1|p.M82Cfs*44|1|0.28|ENSG00000100603|chr14:77751405-77751405|T/-|frameshift_variant	REV__SNW1|p.M82Cfs*44|1|0.28|ENSG00000100603|chr14:77751405-77751405|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	506.63458251953125	3	505.966007	1514.87619	0.4876	0.00024671	-0.92687	-0.00046896	-0.43927	-0.00022225	505.9656930600638	53.795	0.92407	53.795	53.204	54.128	0					26	17	2	0	0	0	0.74191	1	20546	20546		0.40827	0	1	21043000	+		19098	17539	11955	12012	18334	18334					0.13934741478715296
LKEKTRKRIFF	11	Unmodified	_LKEKTRKRIFF_					0	0	0		CLVS2|p.L228Ffs*4|1|0.1|ENSG00000146352|chr6:123055808-123055809|-/T|frameshift_variant	CLVS2|p.L228Ffs*4|1|0.1|ENSG00000146352|chr6:123055808-123055809|-/T|frameshift_variant	CLVS2|p.L228Ffs*4|1|0.1|ENSG00000146352|chr6:123055808-123055809|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	733.451904296875	2	733.453728	1464.8929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.268	1	57.268	56.768	57.768	0								0	0	0	0.9598	1	22034	22034		1.1933	1.1933	1				19099	484	11956	12013	18335	18335					0.17905242364668084
LKELKVDHQRR	11	Unmodified	_LKELKVDHQRR_					0	0	0			REV__CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	REV__CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	711.1948852539062	2	711.420417	1420.82628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.641	1	46.53	46.03	47.03	-0.11121								0	0	0	0.95343	1	17771	17771		4.5289	0.33936	1		+		19100	10163	11957	12014	18336	18336					0.1327000680278161
LKENQWRKRFL	11	Unmodified	_LKENQWRKRFL_					0	0	0			REV__nc|ENSG00000105369|P11912-2|CD79A	REV__nc|ENSG00000105369|P11912-2|CD79A	MSMS	HCT116MG_D190212_S1	1	506.6289367675781	3	506.628165	1516.86267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.857	1	54.857	54.357	55.357	0								0	0	0	0.95196	1	21049	21049		2.4348	1.22	1		+		19101	11250	11958	12015	18337	18337					0.12490883699479127
LKENTGLYSL	10	Unmodified	_LKENTGLYSL_					0	0	0		tr|U7STG2|U7STG2_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01398PE=4SV=1	tr|U7STG2|U7STG2_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01398PE=4SV=1	tr|U7STG2|U7STG2_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01398PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	379.87646484375	3	379.876523	1136.60774	-0.18601	-7.066E-05	0.2066	7.8481E-05	0.02059	7.8216E-06	379.8765010328014	31.904	0.20871	31.904	31.805	32.014	0					5	3	2	0	0	0	0.67188	1	11770	11770		14.957	0	1	12434000			19102	18440	11959	12016	18338	18338					0.044899774406076176
LKEQLPLVRLL	11	Unmodified	_LKEQLPLVRLL_					0	0	0			REV__ENSG00000167208|ENST00000330943|SNX20	REV__ENSG00000167208|ENST00000330943|SNX20	MSMS	HCT116MG_D190212_S2	2	661.4323120117188	2	661.43193	1320.84931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.466	1	35.324	34.824	35.824	-0.14245								0	0	0	0.9598	1	13230	13230		1.1933	0	1		+		19103	13140	11960	12017	18339	18339					0.20171632867572953
LKERLKHY	8	Unmodified	_LKERLKHY_					0	0	0			REV__nc|ENSG00000116133|Q15392-2|DHCR24	REV__nc|ENSG00000116133|Q15392-2|DHCR24	MSMS	HCT116MG_D190212_S2	2	362.5162353515625	3	362.885464	1085.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.544	1	10.271	9.7707	10.771	-0.27365								0	0	0	0.8837	1	3342	3342		0.45834	0	1		+		19104	11573	11961	12018	18340	18340					0.09517130842459665
LKERRNTDLVL	11	Unmodified	_LKERRNTDLVL_					0	0	0			REV__ENST00000606865.1_1_2:54531907-54531958:+|nuORF	REV__ENST00000606865.1_1_2:54531907-54531958:+|nuORF	MSMS	HCT116MG_D190212_S4	4	679.0640869140625	2	678.901525	1355.7885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.855	1	53.526	53.026	54.026	-0.32923								0	0	0	0.95772	1	20120	20120		2.2828	0.95324	1		+		19105	16774	11962	12019	18341	18341					0.12483495817309631
LKEVLKLMV	9	Unmodified	_LKEVLKLMV_					0	0	0			REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.8158569335938	2	536.843571	1071.67259	0.32912	0.00017668	-1.2928	-0.00069401	-0.96365	-0.00051733	537.3448549659154	49.316	0.20239	49.162	49.036	49.238	-0.15405					5	3	2	0	0	0	0.25656	1	18845	18845		9.3831	0	1	24344000	+		19106	10789	11963	12020	18342	18342					0.13961880712895436
LKFKETNLVM	10	Unmodified	_LKFKETNLVM_					0	0	0		LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49;nc|ENSG00000137821|Q8IUZ0-2|LRRC49	LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant	LRRC49|p.P583Tfs*9|1|0.43|ENSG00000137821|chr15:71037214-71037215|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	408.2332763671875	3	408.233653	1221.67913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.252	1	20.3	19.8	20.8	0.048107								0	0	0	0.84671	1	6993	6993		22.775	0	1				19107	3506	11964	12021	18343	18343					0.0771577387358775
LKFKKKRTS	9	Unmodified	_LKFKKKRTS_					0	0	0		tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	379.2488708496094	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.685	1	56.384	55.884	56.884	-0.3009								0	0	0	0.77019	1	21256	21256		0.23584	0	1				19108	18358	11965	12022	18344	18344					0.1617396580197692
LKFLDKARE	9	Unmodified	_LKFLDKARE_					0	0	0		ENSG00000185608|ENST00000333130|MRPL40	ENSG00000185608|ENST00000333130|MRPL40	ENSG00000185608|ENST00000333130|MRPL40	MSMS	HCT116MG_D190212_S1	1	560.327880859375	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.328	1	47.328	46.828	47.828	0								0	0	0	0.76849	1	17979	17979		6.2058	0	1				19109	5835	11966	12023	18345	18345					0.09021693777026485
LKGLLKPEI	9	Unmodified	_LKGLLKPEI_					0	0	0			REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-SECPEP	HCT116MG_D190212_S2	2	505.2693786621094	2	505.83406	1009.65357	0.39849	0.00020157	0.19558	9.8931E-05	0.59407	0.0003005	506.33568154523556	45.45	0.30935	45.358	45.153	45.462	-0.092472					9	5	2	0	0	0	0.21838	1	17287	17287		14.838	0	1	17181000	+		19110	12265	11967	12024	18346	18346					0.14912667413500458
LKHKVLERL	9	Unmodified	_LKHKVLERL_					0	0	0			REV__ENST00000511920.1_1_5:96514654-96518862:-|nuORF	REV__ENST00000511920.1_1_5:96514654-96518862:-|nuORF	MSMS	HCT116MG_D190212_S2	2	379.24884033203125	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.549	1	61.407	60.907	61.907	-0.14227								0	0	0	0.77019	1	23841	23841		0.23584	0	1		+		19111	10662	11968	12025	18347	18347					0.1617396580197692
LKHRRGRL	8	Unmodified	_LKHRRGRL_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MSMS	HCT116MG_D190212_S4	4	518.335693359375	2	518.335959	1034.65736	0.42942	0.00022258	-0.75011	-0.00038881	-0.3207	-0.00016623	518.3356535955115	56.141	0.47822	55.835	55.564	56.042	-0.30626					14	8	2	0	0	0	0.87635	1	21041	21041		0.69038	0	1	2191800			19112	9376	11969	12026	18348	18348					0.14142194750593262
LKICHKQVLVT	11	Unmodified	_LKICHKQVLVT_					0	0	0		TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant;ENST00000367478.8_1_1:186287954-186289536:-|nuORF	TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	641.3908081054688	2	641.389208	1280.76386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.585	1	54.585	54.085	55.085	0								0	0	0	0.94012	1	20936	20936		11.495	0	1				19113	18285	11970	12027	18349	18349					0.13471144410232228
LKIIIILKRAK	11	Unmodified	_LKIIIILKRAK_					0	0	0		ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	MSMS	HCT116MG_D190212_S3	3	436.9872741699219	3	436.986631	1307.93806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.164	1	45.852	45.352	46.352	-0.31237								0	0	0	0.96208	1	17304	17304		0	0	1				19114	8125	11971	12028	18350	18350					0.2964109289789576
LKIIIILKRAK	11	Unmodified	_LKIIIILKRAK_					0	0	0		ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	MSMS	HCT116MG_D190212_S3	3	436.9870910644531	3	436.986631	1307.93806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.713	1	47.398	46.898	47.898	-0.31525								0	0	0	0.96208	1	17925	17925		0	0	1				19115	8125	11971	12028	18351	18351					0.2964109289789576
LKIIIILKRAK	11	Unmodified	_LKIIIILKRAK_					0	0	0		ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	MSMS	HCT116MG_D190212_S3	3	436.9875183105469	3	436.986631	1307.93806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.288	1	47.972	47.472	48.472	-0.31596								0	0	0	0.96208	1	18157	18157		0	0	1				19116	8125	11971	12028	18352	18352					0.2964109289789576
LKIIIILKRAK	11	Unmodified	_LKIIIILKRAK_					0	0	0		ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	ENST00000468148.5_1_6:57086941-57087007:-|nuORF	MSMS	HCT116MG_D190212_S4	4	654.9771118164062	2	654.976308	1307.93806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.44	1	38.058	37.558	38.558	-0.38163								0	0	0	0.96208	1	14088	14088		0	0	1				19117	8125	11971	12028	18353	18353					0.2964109289789576
LKIRRQKFREA	11	Unmodified	_LKIRRQKFREA_					0	0	0			REV__nc|ENSG00000151615|Q12837-2|POU4F2	REV__nc|ENSG00000151615|Q12837-2|POU4F2	MSMS	HCT116MG_D190212_S1	1	722.94580078125	2	722.946602	1443.87865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.173	1	56.173	55.673	56.673	0								0	0	0	0.9598	1	21589	21589		1.1933	0.12188	1		+		19118	10991	11972	12029	18354	18354					0.174465899363895
LKIRYQLESVW	11	Unmodified	_LKIRYQLESVW_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MSMS	HCT116MG_D190212_S3	3	478.943359375	3	478.941638	1433.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.545	1	53.242	52.742	53.742	-0.30305								0	0	0	0.96121	1	20268	20268		0.45452	0.046251	1		+		19119	17219	11973	12030	18355	18355					0.10353567965466937
LKITSHNKV	9	Unmodified	_LKITSHNKV_					0	0	0		ENST00000284637.13_1_4:170017547-170017673:-|nuORF	ENST00000284637.13_1_4:170017547-170017673:-|nuORF	ENST00000284637.13_1_4:170017547-170017673:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	520.3159790039062	2	520.316566	1038.61858	0.48958	0.00025474	-0.38705	-0.00020139	0.10253	5.3347E-05	520.3162568905622	41.576	0.25661	41.507	41.396	41.653	-0.068195					7	4	2	0	0	0	0.53593	1	15760	15760		14.838	1.7958	1	9494000			19120	6945	11974	12031	18356	18356					0.10081424605550637
LKITSHNKV	9	Unmodified	_LKITSHNKV_					0	0	0		ENST00000284637.13_1_4:170017547-170017673:-|nuORF	ENST00000284637.13_1_4:170017547-170017673:-|nuORF	ENST00000284637.13_1_4:170017547-170017673:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	520.316566	1038.61858	0.80988	0.00042139	-0.0018226	-9.4835E-07	0.80806	0.00042045	520.3165131195453	41.598	0.15599	41.598	41.498	41.654	0	0.045479	0.00010432	NaN	14.838	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4585500			19121	6945	11974	12031							0.10081424605550637
LKKCLPPP	8	Unmodified	_LKKCLPPP_					0	0	0		ENST00000561953.1_1_16:27454427-27455945:+|nuORF	ENST00000561953.1_1_16:27454427-27455945:+|nuORF	ENST00000561953.1_1_16:27454427-27455945:+|nuORF	MSMS	HCT116MG_D190212_S4	4	448.2750549316406	2	448.275324	894.536095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.543	1	29.194	28.694	29.694	-0.34921								0	0	0	0.8837	1	10673	10673		0.79363	0	1				19122	8821	11975	12032	18357	18357					0.08460811273039326
LKKEEKFKKKK	11	Unmodified	_LKKEEKFKKKK_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MSMS	HCT116MG_D190212_S1	1	717.462646484375	2	717.463761	1432.91297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.844	1	61.844	61.344	62.344	0								0	0	0	0.96208	1	23870	23870		0	0	1		+		19123	11881	11976	12033	18358	18358					0.21382993304609954
LKKEEKFKKKK	11	Unmodified	_LKKEEKFKKKK_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MSMS	HCT116MG_D190212_S1	1	717.464111328125	2	717.463761	1432.91297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.459	1	62.459	61.959	62.959	0								0	0	0	0.96208	1	24118	24118		0	0	1		+		19124	11881	11976	12033	18359	18359					0.21382993304609954
LKKEGKDKTSC	11	Unmodified	_LKKEGKDKTSC_					0	0	0			REV__DOCK3|p.P1852Qfs*45|14|0.4|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	REV__DOCK3|p.P1852Qfs*45|14|0.4|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	618.8331909179688	2	618.834462	1235.65437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.116	1	41.74	41.24	42.24	-0.37565								0	0	0	0.94851	1	15467	15467		7.1017	0.89594	1		+		19125	10401	11977	12034	18360	18360					0.04597094000268953
LKKETTKR	8	Unmodified	_LKKETTKR_					0	0	0			REV__ENSG00000153936|ENST00000370550|HS2ST1	REV__ENSG00000153936|ENST00000370550|HS2ST1	MSMS	HCT116MG_D190212_S4	4	502.31658935546875	2	502.316566	1002.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.565	1	60.299	59.799	60.799	-0.26582								0	0	0	0.8837	1	22824	22824		0.69038	0	1		+		19126	12664	11978	12035	18361	18361					0.11737424605553315
LKKKEKRHD	9	Unmodified	_LKKKEKRHD_					0	0	0		RAD50|p.R726H|1|0.35|ENSG00000113522|chr5:132595780-132595780|G/A|missense_variant	RAD50|p.R726H|1|0.35|ENSG00000113522|chr5:132595780-132595780|G/A|missense_variant	RAD50|p.R726H|1|0.35|ENSG00000113522|chr5:132595780-132595780|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	591.3592529296875	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.562	1	62.562	62.062	63.062	0								0	0	0	0.7701	1	24160	24160		0.52476	0	1				19127	9800	11979	12036	18362	18362					0.12091589791225488
LKKKKKKKKKR	11	Unmodified	_LKKKKKKKKKR_					0	0	0		ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S1	1	481.022705078125	3	481.024079	1440.05041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.156	1	12.156	11.656	12.656	0								0	0	0	0.96208	1	3883	3883		0	0	1				19128	7541	11980	12037	18363	18363					0.3479836669469023
LKKKKKKKKKR	11	Unmodified	_LKKKKKKKKKR_					0	0	0		ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S1	1	481.02227783203125	3	481.024079	1440.05041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.783	1	12.783	12.283	13.283	0								0	0	0	0.96208	1	4121	4121		0	0	1				19129	7541	11980	12037	18364	18364					0.3479836669469023
LKKKKLRRIPN	11	Unmodified	_LKKKKLRRIPN_					0	0	0		STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant;STK11|p.P281Rfs*6|1|0.43|ENSG00000118046|chr19:1221315-1221315|C/-|frameshift_variant;ENST00000589152.5_1_19:1206825-1221398:+|nuORF;nc|ENSG00000118046|Q15831-2|STK11;ENSG00000118046|ENST00000326873|STK11;ENST00000586358.5_1_19:1207098-1220516:+|nuORF	STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant	STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	697.4779663085938	2	697.477537	1392.94052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.685	1	25.685	25.185	26.185	0								0	0	0	0.96208	1	9250	9250		0	0	1				19130	2596	11981	12038	18365	18365					0.2597694135556594
LKKKKTTIKK	10	Unmodified	_LKKKKTTIKK_					0	0	0		ENSG00000067715|ENST00000261205|SYT1;nc|ENSG00000134207|Q5T7P8-2|SYT6;ENSG00000134207|ENST00000610222|SYT6	ENSG00000067715|ENST00000261205|SYT1	ENSG00000067715|ENST00000261205|SYT1	MSMS	HCT116MG_D190212_S4	4	608.4287109375	2	608.42919	1214.84383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.1	1	59.828	59.328	60.328	-0.27156								0	0	0	0.97116	1	22635	22635		0	0	1				19131	1190	11982	12039	18366	18366					0.24499954075713504
LKKKLFLTLK	10	Unmodified	_LKKKLFLTLK_					0	0	0		ENST00000484669.6_1_1:6685268-6693134:+|nuORF;ENST00000487819.5_2_1:6688710-6693134:+|nuORF;nc|ENSG00000041988|Q8WTV1-3|THAP3;ENSG00000041988|ENST00000054650|THAP3	ENST00000484669.6_1_1:6685268-6693134:+|nuORF	ENST00000484669.6_1_1:6685268-6693134:+|nuORF	MSMS	HCT116MG_D190212_S2	2	616.426513671875	2	616.428659	1230.84277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.743	1	59.582	59.082	60.082	-0.16012								0	0	0	0.96937	1	23107	23107		0.40072	0.093686	1				19132	1006	11983	12040	18367	18367					0.23657739706800385
LKKLERPQ	8	Unmodified	_LKKLERPQ_					0	0	0		ENST00000558438.1_1_15:99688849-99696475:-|nuORF	ENST00000558438.1_1_15:99688849-99696475:-|nuORF	ENST00000558438.1_1_15:99688849-99696475:-|nuORF	MSMS	HCT116MG_D190212_S4	4	506.3171691894531	2	506.319109	1010.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.466	1	34.081	33.581	34.581	-0.38558								0	0	0	0.8837	1	12586	12586		5.2307	0	1				19133	8802	11984	12041	18368	18368					0.1187772846816415
LKKLFARKMKI	11	Unmodified	_LKKLFARKMKI_					0	0	0		MS4A5|p.Q40K|1|0.19|ENSG00000166930|chr11:60429792-60429792|C/A|missense_variant	MS4A5|p.Q40K|1|0.19|ENSG00000166930|chr11:60429792-60429792|C/A|missense_variant	MS4A5|p.Q40K|1|0.19|ENSG00000166930|chr11:60429792-60429792|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	688.4547119140625	2	688.452142	1374.88973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.697	1	59.425	58.925	59.925	-0.27257								0	0	0	0.96149	1	22472	22472		0.30703	0.03801	1				19134	9342	11985	12042	18369	18369					0.2172827598631102
LKKLKSKRV	9	Unmodified	_LKKLKSKRV_					0	0	0		ENSG00000164326|ENST00000296777|CARTPT	ENSG00000164326|ENST00000296777|CARTPT	ENSG00000164326|ENST00000296777|CARTPT	MSMS	HCT116MG_D190212_S1	1	550.4104614257812	2	550.387326	1098.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.386	1	59.386	58.886	59.886	0								0	0	0	0.76995	1	22888	22888		2.0598	0	1				19135	4690	11986	12043	18370	18370					0.21466842698669097
LKKLLIHK	8	Unmodified	_LKKLLIHK_					0	0	0			REV__ENST00000400075.3_1_21:27124380-27124422:+|nuORF	REV__ENST00000400075.3_1_21:27124380-27124422:+|nuORF	MSMS	HCT116MG_D190212_S3	3	496.8511047363281	2	496.852587	991.690622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.32	1	13.389	12.889	13.889	0.069158								0	0	0	0.8837	1	4217	4217		0	0	1		+		19136	15388	11987	12044	18371	18371					0.19444383749919325
LKKLLTAVVKL	11	Unmodified	_LKKLLTAVVKL_					0	0	0			REV__NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant	REV__NBEA|p.N854Kfs*18|1|0.22|ENSG00000172915|chr13:35156110-35156111|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	409.2918701171875	3	409.29172	1224.85333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.346	1	38.966	38.466	39.466	-0.38055								0	0	0	0.9619	1	14453	14453		0.094841	0.094841	1		+		19137	17063	11988	12045	18372	18372					0.24989722361260647
LKKPMPLP	8	Unmodified	_LKKPMPLP_					0	0	0			REV__nc|ENSG00000095321|P43155-3|CRAT	REV__nc|ENSG00000095321|P43155-3|CRAT	MSMS	HCT116MG_D190212_S3	3	462.146484375	2	462.290974	922.567395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.987	1	31.708	31.208	32.208	-0.27841								0	0	0	0.8837	1	11707	11707		0.79363	0	1		+		19138	11024	11989	12046	18373	18373					0.1030138430713805
LKKRKTTTK	9	Unmodified	_LKKRKTTTK_					0	0	0		ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	MULTI-MSMS	HCT116MG_D190212_S1	1	552.3671875	2	552.36659	1102.71863	0.39887	0.00022032	-0.16329	-9.0194E-05	0.23558	0.00013013	552.3664087601621	60.723	0.46053	60.723	60.543	61.004	0					11	8	2	0	0	0	0.77568	1	23428	23428		0	0	1	39411000			19139	2270	11990	12047	18374	18374					0.17137661939341342
LKKRRCIQWRF	11	Unmodified	_LKKRRCIQWRF_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-MSMS	HCT116MG_D190212_S1	1	767.9530029296875	2	767.450997	1532.88744	0.92365	0.00070885	0.06843	5.2517E-05	0.99208	0.00076137	767.450928396024	54.791	1.1691	54.791	54.231	55.4	0					44	22	3	0	0	0	0.74191	1	21022	21022		1.1933	0.88631	1	57569000			19140	9406	11991	12048	18375	18375					0.14231240301205617
LKKWHWKLLY	10	Unmodified	_LKKWHWKLLY_					0	0	0			REV__ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant	REV__ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	472.28399658203125	3	472.283447	1413.82851	0.34013	0.00016064	0.20428	9.6477E-05	0.54441	0.00025712	472.28349725733233	53.396	1.9485	53.396	52.587	54.536	0					167	37	6	0	0	0	0.89116	1	20142	20142		0.77653	0.77653	1	687560000	+		19141	9831	11992	12049	18376	18376					0.13815087278544524
LKKWHWKLLY	10	Unmodified	_LKKWHWKLLY_					0	0	0			REV__ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant	REV__ACE|p.M457Wfs*68|1|0.41|ENSG00000159640|chr17:63483051-63483051|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	472.283447	1413.82851	0.34013	0.00016064	0.20428	9.6477E-05	0.54441	0.00025712	472.28349725733233	53.396	1.9485	53.396	52.587	54.536	0	0	0	NaN	0.77653	167	37	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687560000	+		19142	9831	11992	12049							0.13815087278544524
LKLAFCLAL	9	Unmodified	_LKLAFCLAL_					0	0	0		ENSG00000135211|ENST00000257663|TMEM60	ENSG00000135211|ENST00000257663|TMEM60	ENSG00000135211|ENST00000257663|TMEM60	MULTI-MSMS	HCT116MG_D190212_S1	1	496.3042297363281	2	496.304081	990.59361	0.35734	0.00017735	-0.13727	-6.8127E-05	0.22007	0.00010922	496.3039361126638	45.097	2.1903	45.097	44.25	46.44	0					103	41	3	0	0	0	0.74258	1	17463	17463		2.3027	0	1	227400000			19143	3332	11993	12050	18377	18377					0.0979365347861858
LKLFLHRL	8	Unmodified	_LKLFLHRL_					0	0	0		ENST00000301821.10_1_3:39453845-39453944:+|nuORF	ENST00000301821.10_1_3:39453845-39453944:+|nuORF	ENST00000301821.10_1_3:39453845-39453944:+|nuORF	MSMS	HCT116MG_D190212_S2	2	520.3402099609375	2	520.342387	1038.67022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.101	1	59.947	59.447	60.447	-0.15441								0	0	0	0.8837	1	23253	23253		2.3027	0	1				19144	7005	11994	12051	18378	18378					0.15243213090116114
LKLILRKLP	9	Unmodified	_LKLILRKLP_					0	0	0			REV__nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	REV__nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	MSMS	HCT116MG_D190212_S3	3	365.2644958496094	3	365.265505	1092.77469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.509	1	25.403	24.903	25.903	-0.10618								0	0	0	0.77018	1	9110	9110		0.26902	0	1		+		19145	11717	11995	12052	18379	18379					0.2320091484684781
LKLILRKLP	9	Unmodified	_LKLILRKLP_					0	0	0			REV__nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	REV__nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	MSMS	HCT116MG_D190212_S3	3	365.26458740234375	3	365.265505	1092.77469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.866	1	27.678	27.178	28.178	-0.18847								0	0	0	0.77018	1	10061	10061		0.26902	0	1		+		19146	11717	11995	12052	18380	18380					0.2320091484684781
LKLILRKLP	9	Unmodified	_LKLILRKLP_					0	0	0			REV__nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	REV__nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	MSMS	HCT116MG_D190212_S4	4	365.2644958496094	3	365.265505	1092.77469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.015	1	27.692	27.192	28.192	-0.32346								0	0	0	0.77018	1	10055	10055		0.26902	0	1		+		19147	11717	11995	12052	18381	18381					0.2320091484684781
LKLKKLLKFKK	11	Unmodified	_LKLKKLLKFKK_					0	0	0			REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	REV__tr|U7SQX1|U7SQX1_FUSNUMajorfacilitatorsuperfamily(MFS)profiledomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01612PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	693.9967041015625	2	693.999783	1385.98501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.935	1	38.553	38.053	39.053	-0.38163								0	0	0	0.96208	1	14288	14288		0	0	1		+		19148	17758	11996	12053	18382	18382					0.3074595244900138
LKLKKLVFK	9	Unmodified	_LKLKKLVFK_					0	0	0			REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	MSMS	HCT116MG_D190212_S3	3	558.895751953125	2	558.896995	1115.77944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0028	1	9.0234	8.5234	9.5234	0.020599								0	0	0	0.7701	1	2723	2723		0.52476	0	1		+		19149	16666	11997	12054	18383	18383					0.22617798989585935
LKLKKVIKISK	11	Unmodified	_LKLKKVIKISK_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MSMS	HCT116MG_D190212_S3	3	649.4691162109375	2	649.468315	1296.92208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.712	1	11.767	11.267	12.267	0.055045								0	0	0	0.96208	1	3606	3606		0	0	1		+		19150	13075	11998	12055	18384	18384					0.2854938666096132
LKLLKPQLLRQ	11	Unmodified	_LKLLKPQLLRQ_					0	0	0			REV__SNAPC4|p.P406Rfs*46|1|0.23|ENSG00000165684|chr9:136387755-136387755|G/-|frameshift_variant	REV__SNAPC4|p.P406Rfs*46|1|0.23|ENSG00000165684|chr9:136387755-136387755|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	675.4522705078125	2	675.453197	1348.89184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.429	1	58.429	57.929	58.929	0								0	0	0	0.96149	1	22508	22508		0.30703	0.03801	1		+		19151	13071	11999	12056	18385	18385					0.23135027995772361
LKLLVLFLK	9	Unmodified	_LKLLVLFLK_					0	0	0		ENST00000302418.4_1_10:32299749-32299908:-|nuORF	ENST00000302418.4_1_10:32299749-32299908:-|nuORF	ENST00000302418.4_1_10:32299749-32299908:-|nuORF	MSMS	HCT116MG_D190212_S1	1	362.9264221191406	3	362.926489	1085.75764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.466	1	11.466	10.966	11.966	0								0	0	0	0.77025	1	3611	3611		0	0	1				19152	7007	12000	12057	18386	18386					0.2181899424099356
LKLRRNTRRHR	11	Unmodified	_LKLRRNTRRHR_					0	0	0		ENST00000264245.8_2_3:119013288-119013453:+|nuORF	ENST00000264245.8_2_3:119013288-119013453:+|nuORF	ENST00000264245.8_2_3:119013288-119013453:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	753.471435546875	2	753.471641	1504.92873	1.0798	0.00081357	-0.20638	-0.0001555	0.87337	0.00065806	753.471269652636	56.84	0.36886	56.661	56.475	56.844	-0.17904					21	6	4	0	0	0	0.74191	1	21935	21935		0	0	1	39295000			19153	6887	12001	12058	18387	18387					0.19646137384893336
LKLRRNTRRHR	11	Unmodified	_LKLRRNTRRHR_					0	0	0		ENST00000264245.8_2_3:119013288-119013453:+|nuORF	ENST00000264245.8_2_3:119013288-119013453:+|nuORF	ENST00000264245.8_2_3:119013288-119013453:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	503.1075439453125	3	502.650186	1504.92873	0.53243	0.00026763	-0.050892	-2.5581E-05	0.48154	0.00024205	502.65011504281097	56.84	0.62978	56.661	56.421	57.051	-0.17904					21	11	2	0	0	0	0.36631	1	21998	21998		0	0	1	140120000			19154	6887	12001	12058	18388	18388					0.19646137384893336
LKLSPSPSSR	10	Unmodified	_LKLSPSPSSR_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF;LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2	ENSG00000113368|ENST00000261366|LMNB1;LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	HCT116MG_D190212_S1	1	536.3115234375	2	536.31148	1070.60841	0.40527	0.00021735	0.38484	0.00020639	0.79011	0.00042374	536.3115711519226	52.15	0.62677	52.15	51.807	52.434	0					24	11	4	0	0	0	0.7974	1	19920	19920		12.241	2.1667	1	238260000			19155	2383;5426	12002	12059	18389	18389					0.07592816880332975
LKLWTYLWLHL	11	Unmodified	_LKLWTYLWLHL_					0	0	0		ENST00000360565.7_2_19:50161652-50161889:+|nuORF	ENST00000360565.7_2_19:50161652-50161889:+|nuORF	ENST00000360565.7_2_19:50161652-50161889:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	495.95904541015625	3	495.958741	1484.85439	0.45866	0.00022748	0.49787	0.00024693	0.95654	0.0004744	495.95895529787043	54.333	0.67735	54.01	53.567	54.244	-0.32349					19	12	2	0	0	0	0.74191	1	20350	20350		0.094841	0.011491	1	2598400			19156	7351	12003	12060	18390	18390					0.13135936730168396
LKMLLWTA	8	Unmodified	_LKMLLWTA_					0	0	0		ENST00000369042.5_1_6:107419894-107419921:-|nuORF	ENST00000369042.5_1_6:107419894-107419921:-|nuORF	ENST00000369042.5_1_6:107419894-107419921:-|nuORF	MSMS	HCT116MG_D190212_S4	4	488.2882385253906	2	488.288431	974.562309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.928	1	48.563	48.063	49.063	-0.365								0	0	0	0.8837	1	18131	18131		2.5775	0	1				19157	7408	12004	12061	18391	18391					0.07401080444526542
LKNPKVVRL	9	Unmodified	_LKNPKVVRL_					0	0	0		ENSG00000203908|ENST00000370367|KHDC3L	ENSG00000203908|ENST00000370367|KHDC3L	ENSG00000203908|ENST00000370367|KHDC3L	MSMS	HCT116MG_D190212_S4	4	356.2430114746094	3	356.241359	1065.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.723	1	40.345	39.845	40.845	-0.37828								0	0	0	0.77018	1	14951	14951		0.26902	0	1				19158	6316	12005	12062	18392	18392					0.17202580773277987
LKNRKKRTYR	10	Unmodified	_LKNRKKRTYR_					0	0	0		ENST00000262013.11_1_17:49156995-49157052:-|nuORF	ENST00000262013.11_1_17:49156995-49157052:-|nuORF	ENST00000262013.11_1_17:49156995-49157052:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	454.28387451171875	3	454.952872	1361.83679	0.065388	2.9749E-05	-0.66018	-0.00030035	-0.59479	-0.0002706	454.9526686863964	54.095	0.72183	53.905	53.377	54.099	-0.1894					16	13	2	0	0	0	0.31201	1	20812	20812		0.50596	0	1	10208000			19159	6860	12006	12063	18393	18393					0.17034034247876662
LKNTCLTRP	9	Unmodified	_LKNTCLTRP_					0	0	0		sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	523.2799072265625	2	523.294776	1044.575	0.32213	0.00016857	0.46543	0.00024356	0.78756	0.00041213	523.2951739280719	30.07	0.15608	29.713	29.597	29.753	-0.3571					4	2	2	0	0	0	0.23301	1	10899	10899		15.847	7.2539	1	1261000			19160	18220	12007	12064	18394	18394					0.05449491836770903
LKNTCLTRP	9	Unmodified	_LKNTCLTRP_					0	0	0		sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	523.294776	1044.575	0.49917	0.00026121	-0.10603	-5.5486E-05	0.39314	0.00020573	523.2947307431975	29.82	0.16215	29.584	29.5	29.662	-0.23655	-0.064665	-1.0752E-05	NaN	15.847	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6004300			19161	18220	12007	12064							0.05449491836770903
LKPRKHLAQ	9	Unmodified	_LKPRKHLAQ_					0	0	0			REV__ENSG00000153714|ENST00000319264|LURAP1L	REV__ENSG00000153714|ENST00000319264|LURAP1L	MSMS	HCT116MG_D190212_S3	3	364.196533203125	3	364.232975	1089.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.682	1	58.416	57.916	58.916	-0.26617								0	0	0	0.76995	1	22329	22329		1.0715	0	1		+		19162	12656	12008	12065	18395	18395					0.13584525970668437
LKQDHCAEVE	10	Unmodified	_LKQDHCAEVE_					0	0	0			REV__ENST00000510565.5_1_4:3945001-3954866:-|nuORF	REV__ENST00000510565.5_1_4:3945001-3954866:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	586.777587890625	2	586.274238	1170.53392	0.84174	0.00049349	0.4339	0.00025439	1.2756	0.00074788	586.2744133253218	43.66	0.66857	43.582	43.35	44.019	-0.078373					22	12	4	0	0	0	0.64492	1	16690	16690		24.991	3.2443	1	93809000	+		19163	14849	12009	12066	18396	18396					-0.04452313993374446
LKQPSQPPERY	11	Unmodified	_LKQPSQPPERY_					0	0	0			REV__ENSG00000235568|ENST00000329021|NFAM1	REV__ENSG00000235568|ENST00000329021|NFAM1	MULTI-MSMS	HCT116MG_D190212_S4	4	671.8598022460938	2	671.859326	1341.7041	0.49912	0.00033534	0.22846	0.00015349	0.72758	0.00048883	671.8594977313865	38.524	0.52258	38.142	37.813	38.336	-0.38163					15	10	2	0	0	0	0.7332	1	14084	14084		9.544	0	1	6277200	+		19164	14331	12010	12067	18397	18397					0.04691545000559927
LKRFRHKLRDV	11	Unmodified	_LKRFRHKLRDV_					0	0	0		ENSG00000174885|ENST00000534750|NLRP6;nc|ENSG00000174885|P59044|NLRP6	ENSG00000174885|ENST00000534750|NLRP6	ENSG00000174885|ENST00000534750|NLRP6	MSMS	HCT116MG_D190212_S2	2	734.4563598632812	2	734.454594	1466.89463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.834	1	19.459	18.959	19.959	-0.37503								0	0	0	0.95196	1	6900	6900		5.2969	0.39987	1				19165	5350	12011	12068	18398	18398					0.17986296173285155
LKRHLAAP	8	Unmodified	_LKRHLAAP_					0	0	0			REV__ENST00000562866.1_1_16:89783858-89784437:+|nuORF	REV__ENST00000562866.1_1_16:89783858-89784437:+|nuORF	MSMS	HCT116MG_D190212_S4	4	453.2859191894531	2	453.287611	904.56067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.908	1	44.535	44.035	45.035	-0.37326								0	0	0	0.8837	1	16549	16549		0.79363	0	1		+		19166	16503	12012	12069	18399	18399					0.10457207470790308
LKRIYLEEKR	10	Unmodified	_LKRIYLEEKR_					0	0	0		tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	tr|U7SQH7|U7SQH7_FUSNUProteinkinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01642PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	674.408935546875	2	674.408986	1346.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.767	1	59.767	59.267	60.267	0								0	0	0	0.96937	1	23035	23035		0.40072	0	1				19167	18387	12013	12070	18400	18400					0.14388987685288157
LKRKIRPVVLL	11	Unmodified	_LKRKIRPVVLL_					0	0	0		ENST00000380752.9_1_13:30087987-30088110:-|nuORF	ENST00000380752.9_1_13:30087987-30088110:-|nuORF	ENST00000380752.9_1_13:30087987-30088110:-|nuORF	MSMS	HCT116MG_D190212_S2	2	667.9730224609375	2	667.971557	1333.92856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.52	1	41.452	40.952	41.952	-0.068199								0	0	0	0.96149	1	15691	15691		0.30703	0	1				19168	7569	12014	12071	18401	18401					0.2749532461234594
LKRKKKLKKK	10	Unmodified	_LKRKKKLKKK_					0	0	0		ENST00000372600.8_1_9:131679364-131679535:+|nuORF	ENST00000372600.8_1_9:131679364-131679535:+|nuORF	ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MSMS	HCT116MG_D190212_S1	1	649.4785766601562	2	649.479549	1296.94454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.468	1	37.468	36.968	37.968	0								0	0	0	0.97116	1	14000	14000		0	0	1				19169	7461	12015	12072	18402	18402					0.3079503084920816
LKRLKIIIFP	10	Unmodified	_LKRLKIIIFP_					0	0	0		ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	MSMS	HCT116MG_D190212_S3	3	620.9303588867188	2	620.928826	1239.8431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.039	1	38.738	38.238	39.238	-0.30137								0	0	0	0.96911	1	14482	14482		0.45834	0	1				19170	3152	12016	12073	18403	18403					0.23277159426675098
LKRQKLLGF	9	Unmodified	_LKRQKLLGF_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MSMS	HCT116MG_D190212_S4	4	368.254150390625	3	368.241359	1101.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.892	1	55.58	55.08	56.08	-0.312								0	0	0	0.76991	1	20941	20941		1.1933	0	1		+		19171	12409	12017	12074	18404	18404					0.1554658077327531
LKRRIWRMPLF	11	Unmodified	_LKRRIWRMPLF_					0	0	0		ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	505.9744873046875	3	505.974619	1514.90203	0.51842	0.00026231	-0.35415	-0.00017919	0.16427	8.3117E-05	505.97440158516196	57.012	0.46848	56.833	56.635	57.103	-0.17904					26	8	4	0	0	0	0.74191	1	21995	21995		1.3296	0.82369	1	26612000			19172	8937	12018	12075	18405	18405					0.16517312449332167
LKRRIWRMPLF	11	Unmodified	_LKRRIWRMPLF_					0	0	0		ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	ENST00000577847.1_1_17:18087769-18087952:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		3	505.974619	1514.90203	0.35431	0.00017927	-0.27503	-0.00013916	0.079279	4.0113E-05	505.97437849824496	56.791	0.46585	56.791	56.583	57.049	0	-0.020812	8.1341E-05	NaN	1.3296	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40257000			19173	8937	12018	12075							0.16517312449332167
LKRRKQHWRR	10	Unmodified	_LKRRKQHWRR_					0	0	0			REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF	REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	732.9525756835938	2	732.450177	1462.8858	0.6928	0.00050744	-0.20864	-0.00015282	0.48415	0.00035462	732.4495189336657	61.087	1.757	61.087	60.491	62.248	0					50	33	2	0	0	0	0.89272	1	23804	23804		0.40072	0.050084	1	14798000	+		19174	15838	12019	12076	18406	18406					0.17287367327458014
LKRRLGLHL	9	Unmodified	_LKRRLGLHL_					0	0	0			REV__ENST00000367612.7_3_1:179813331-179813430:-|nuORF	REV__ENST00000367612.7_3_1:179813331-179813430:-|nuORF	MSMS	HCT116MG_D190212_S1	1	369.24798583984375	3	369.248737	1104.72438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.081	1	42.081	41.581	42.581	0								0	0	0	0.77018	1	15862	15862		0.26902	0	1		+		19175	15128	12020	12077	18407	18407					0.17620805241676862
LKRRRVLLVLP	11	Unmodified	_LKRRRVLLVLP_					0	0	0		ENSG00000230358|ENST00000424157|SPDYE21	ENSG00000230358|ENST00000424157|SPDYE21	ENSG00000230358|ENST00000424157|SPDYE21	MSMS	HCT116MG_D190212_S1	1	682.2573852539062	2	681.974631	1361.93471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.88	1	37.88	37.38	38.38	0								0	0	0	0.96141	1	14166	14166		0.35063	0	1				19176	6499	12021	12078	18408	18408					0.26821842843878585
LKRVFKRKKPQ	11	Unmodified	_LKRVFKRKKPQ_					0	0	0		ENSG00000203760|ENST00000368328|CENPW;nc|ENSG00000203760|Q5EE01-2|CENPW	ENSG00000203760|ENST00000368328|CENPW	ENSG00000203760|ENST00000368328|CENPW	MSMS	HCT116MG_D190212_S2	2	714.603271484375	2	714.469712	1426.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.902	1	60.754	60.254	61.254	-0.14852								0	0	0	0.96149	1	23581	23581		0.30703	0	1				19177	6313	12022	12079	18409	18409					0.22848654838480797
LKSDRYPVHTA	11	Unmodified	_LKSDRYPVHTA_					0	0	0			REV__KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant	REV__KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	643.8465576171875	2	643.846219	1285.67788	0.58221	0.00037485	-0.26232	-0.0001689	0.31989	0.00020596	643.846141808781	32.615	0.36448	32.404	32.273	32.638	-0.21135					9	6	2	0	0	0	0.70059	1	12098	12098		21.59	2.2282	1	42243000	+		19178	12248	12023	12080	18410	18410					0.04647275829074715
LKSDRYPVHTA	11	Unmodified	_LKSDRYPVHTA_					0	0	0			REV__KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant	REV__KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	643.846219	1285.67788	0.57199	0.00036828	-0.41174	-0.0002651	0.16025	0.00010318	643.8460749815218	32.404	0.20842	32.404	32.274	32.482	0	-0.0076002	-0.00034646	NaN	21.59	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8001500	+		19179	12248	12023	12080							0.04647275829074715
LKSDRYPVHTA	11	Unmodified	_LKSDRYPVHTA_					0	0	0			REV__KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant	REV__KIF21A|p.V717Lfs*12|4|0.32|ENSG00000139116|chr12:39340327-39340327|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	643.846219	1285.67788	0.76897	0.0004951	0.1503	9.6769E-05	0.91927	0.00059187	643.846045814659	32.712	0.20826	32.427	32.3	32.508	-0.28511	0.015541	0.00037728	NaN	21.59	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2689300	+		19180	12248	12023	12080							0.04647275829074715
LKTCLDQY	8	Unmodified	_LKTCLDQY_					0	0	0			REV__ZBED9|p.S934Qfs*17|1|0.4|ENSG00000232040|chr6:28573089-28573089|A/-|frameshift_variant	REV__ZBED9|p.S934Qfs*17|1|0.4|ENSG00000232040|chr6:28573089-28573089|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	492.24658203125	2	492.24696	982.479368	0.21706	0.00010685	-0.68308	-0.00033625	-0.46602	-0.0002294	492.24642974984096	37.214	0.36413	36.913	36.769	37.133	-0.30137					9	6	2	0	0	0	0.77871	1	13833	13833		13.906	0	1	2731500	+		19181	14323	12024	12081	18411	18411					-0.012572810741403373
LKTLLLKLNN	10	Unmodified	_LKTLLLKLNN_					0	0	0		CLEC16A|p.S150L|1|0.29|ENSG00000038532|chr16:10969266-10969266|C/T|missense_variant	CLEC16A|p.S150L|1|0.29|ENSG00000038532|chr16:10969266-10969266|C/T|missense_variant	CLEC16A|p.S150L|1|0.29|ENSG00000038532|chr16:10969266-10969266|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	585.3845825195312	2	585.384448	1168.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.932	1	61.932	61.432	62.432	0								0	0	0	0.96937	1	23905	23905		0.40072	0	1				19182	475	12025	12082	18412	18412					0.17671699396373697
LKTLTLMIF	9	Unmodified	_LKTLTLMIF_					0	0	0		nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S1	1	540.3297119140625	2	540.330296	1078.64604	0.56143	0.00030336	-0.11491	-6.2089E-05	0.44652	0.00024127	540.330108924905	45.523	1.4565	45.523	44.829	46.285	0					71	27	4	0	0	0	0.71345	1	17164	17164		4.3292	0	1	115300000			19183	9571	12026	12083	18413	18413					0.1098619182157563
LKTLTLMIF	9	Unmodified	_LKTLTLMIF_					0	0	0		nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S1	1	540.3297729492188	2	540.330296	1078.64604	0.50631	0.00027358	0.054123	2.9244E-05	0.56043	0.00030282	540.3302347204735	47.401	2.1232	47.401	46.285	48.408	0					163	41	5	0	0	0	0.66792	1	17659	17659		7.2892	7.2892	1	769890000			19184	9571	12026	12083	18414	18414					0.1098619182157563
LKTLTLMIF	9	Unmodified	_LKTLTLMIF_					0	0	0		nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S2	2	540.3303833007812	2	540.330296	1078.64604	0.72103	0.00038959	-0.12464	-6.7347E-05	0.59639	0.00032224	540.3301139452494	47.725	3.0129	47.592	46.45	49.463	-0.13281					127	58	4	0	0	0	0.74607	1	18157	18157		2.0598	0	1	216100000			19185	9571	12026	12083	18415	18415					0.1098619182157563
LKTQKATNHVR	11	Unmodified	_LKTQKATNHVR_					0	0	0		nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A	nc|ENSG00000168026|Q8NDW8|TTC21A	nc|ENSG00000168026|Q8NDW8|TTC21A	MULTI-MSMS	HCT116MG_D190212_S2	2	648.3795166015625	2	648.38076	1294.74697	0.65764	0.0004264	-0.75542	-0.0004898	-0.097782	-6.34E-05	648.3801183279251	51.147	1.3999	50.969	50.132	51.532	-0.17869					41	26	2	0	0	0	0.73536	1	19498	19498		8.7454	0.58988	1	19750000			19186	9538	12027	12084	18416	18416					0.1113835984860998
LKVKFKFIL	9	Unmodified	_LKVKFKFIL_					0	0	0		ENST00000508325.5_1_5:68860950-68862940:+|nuORF	ENST00000508325.5_1_5:68860950-68862940:+|nuORF	ENST00000508325.5_1_5:68860950-68862940:+|nuORF	MSMS	HCT116MG_D190212_S4	4	379.25872802734375	3	379.258239	1134.75289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.398	1	58.109	57.609	58.609	-0.28879								0	0	0	0.77025	1	21948	21948		0	0	1				19187	8476	12028	12085	18417	18417					0.19090110098272817
LKVKQNCNFP	10	Unmodified	_LKVKQNCNFP_					0	0	0			REV__ENST00000508115.1_1_4:47853078-47877235:-|nuORF	REV__ENST00000508115.1_1_4:47853078-47877235:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	397.5499572753906	3	397.549864	1189.62776	0.071267	2.8332E-05	0.29022	0.00011538	0.36149	0.00014371	397.5499513939144	29.422	0.1559	29.072	28.981	29.137	-0.34921					4	2	2	0	0	0	0.8806	1	10648	10648		3.3196	0.24738	1	2333000	+		19188	13299	12029	12086	18418	18418					0.04053449899561201
LKVLHQAQL	9	Unmodified	_LKVLHQAQL_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MSMS	HCT116MG_D190212_S1	1	525.3252563476562	2	525.326934	1048.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.56	1	47.56	47.06	48.06	0								0	0	0	0.76694	1	18074	18074		11.64	0.81637	1				19189	3240	12030	12087	18419	18419					0.11694014985209833
LKVLVPPN	8	Unmodified	_LKVLVPPN_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;HMCN2|p.P4784Qfs*22|1|0.32|ENSG00000148357|chr9:130430363-130430363|C/-|frameshift_variant;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	HCT116MG_D190212_S3	3	440.28668212890625	2	440.286746	878.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.836	1	29.599	29.099	30.099	-0.23655								0	0	0	0.8837	1	10852	10852		13.508	4.1604	1				19190	4020	12031	12088	18420	18420					0.11480153662171233
LKVYIRRVI	9	Unmodified	_LKVYIRRVI_					0	0	0			REV__ENST00000321250.12_1_8:29963998-29964085:+|nuORF	REV__ENST00000321250.12_1_8:29963998-29964085:+|nuORF	MSMS	HCT116MG_D190212_S1	1	387.2605285644531	3	387.260642	1158.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.144	1	17.144	16.644	17.644	0								0	0	0	0.76948	1	5816	5816		2.7352	0	1		+		19191	14886	12032	12089	18421	18421					0.18706842698679793
LKVYIRRVI	9	Unmodified	_LKVYIRRVI_					0	0	0			REV__ENST00000321250.12_1_8:29963998-29964085:+|nuORF	REV__ENST00000321250.12_1_8:29963998-29964085:+|nuORF	MSMS	HCT116MG_D190212_S1	1	387.2601013183594	3	387.260642	1158.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.964	1	21.964	21.464	22.464	0								0	0	0	0.76991	1	7753	7753		1.1933	0	1		+		19192	14886	12032	12089	18422	18422					0.18706842698679793
LKWVWAEQG	9	Unmodified	_LKWVWAEQG_					0	0	0			REV__SCPEP1|p.R384W|1|0.5|ENSG00000121064|chr17:57002035-57002035|C/T|missense_variant	REV__SCPEP1|p.R384W|1|0.5|ENSG00000121064|chr17:57002035-57002035|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	372.5312805175781	3	372.86607	1115.57638	-0.18257	-6.8072E-05	-0.90298	-0.00033669	-1.0855	-0.00040476	372.86572889723396	28.23	0.31083	27.9	27.667	27.977	-0.32987					6	5	2	0	0	0	0.25537	1	10303	10303		15.248	4.449	1	21343000	+		19193	17498	12033	12090	18423	18423					0.02321449197165748
LKWWWRWLRRR	11	Unmodified	_LKWWWRWLRRR_					0	0	0			REV__chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	MSMS	HCT116MG_D190212_S1	1	871.7896728515625	2	871.504952	1740.99535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.372	1	35.372	34.872	35.872	0								0	0	0	0.96157	1	13155	13155		0.26902	0.26902	1		+		19194	10179	12034	12091	18424	18424					0.15449372946795847
LLAAETELL	9	Unmodified	_LLAAETELL_					0	0	0		nc|ENSG00000076554|P55327-8|TPD52	nc|ENSG00000076554|P55327-8|TPD52	nc|ENSG00000076554|P55327-8|TPD52	MSMS	HCT116MG_D190212_S1	1	486.7853698730469	2	486.784233	971.553913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.639	1	43.639	43.139	44.139	0								0	0	0	0.15181	1	16492	16492		50.855	5.1554	1				19195	9380	12035	12092	18425	18425					0.0669980500889551
LLAAWTARA	9	Unmodified	_LLAAWTARA_					0	0	0		nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF	nc|ENSG00000142192|P05067-7|APP	nc|ENSG00000142192|P05067-7|APP	MULTI-MSMS	HCT116MG_D190212_S2	2	486.7848205566406	2	486.784902	971.55525	0.30667	0.00014928	-0.27633	-0.00013451	0.030344	1.4771E-05	486.7846750863653	43.506	0.30924	43.433	43.303	43.612	-0.073376					10	5	2	0	0	0	0.24534	1	16519	16519		36.506	8.0194	1	90874000			19196	3748	12036	12093	18426	18426					0.0683348388831746
LLAAWTARA	9	Unmodified	_LLAAWTARA_					0	0	0		nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF	nc|ENSG00000142192|P05067-7|APP	nc|ENSG00000142192|P05067-7|APP	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	486.784902	971.55525	0.22564	0.00010984	0.46697	0.00022731	0.69261	0.00033715	486.78508610444146	43.818	0.26088	43.512	43.396	43.657	-0.30616	0.039531	0.00049726	NaN	36.506	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2806500			19197	3748	12036	12093							0.0683348388831746
LLADASAFSGE	11	Unmodified	_LLADASAFSGE_					0	0	0			REV__nc|ENSG00000138162|O95359-6|TACC2	REV__nc|ENSG00000138162|O95359-6|TACC2	MULTI-MSMS	HCT116MG_D190212_S3	3	540.764892578125	2	540.764029	1079.5135	0.54021	0.00029212	0.63574	0.00034379	1.1759	0.00063591	540.7641925487953	33.394	0.77757	33.104	32.889	33.667	-0.29013					31	20	2	0	0	0	0.70991	1	12226	12226		18.146	0.011366	1	15816000	+		19198	12214	12037	12094	18427	18427					-0.02307161381509104
LLAEKIYKI	9	Unmodified	_LLAEKIYKI_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant;CREBBP|p.S976Pfs*22|1|0.09|ENSG00000005339|chr16:3769309-3769309|G/-|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.Q2411Sfs*2|1|0.24|ENSG00000005339|chr16:3727816-3727816|G/-|frameshift_variant;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	HCT116MG_D190212_S2	2	545.8477783203125	2	545.847167	1089.67978	0.66448	0.0003627	-0.31621	-0.0001726	0.34827	0.0001901	545.846986569271	40.718	0.25735	40.648	40.519	40.777	-0.069626					7	4	2	0	0	0	0.049866	1	15381	15381		71.708	25.968	1	27547000			19199	1704	12038	12095	18428	18428					0.13852936584976305
LLAEPVPGI	9	Unmodified	_LLAEPVPGI_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;nc|ENSG00000276380|Q5JXB2|UBE2NL	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-MSMS	HCT116MG_D190212_S2	2	908.5447998046875	1	908.545145	907.537869	0.87704	0.00079683	-0.24243	-0.00022026	0.63461	0.00057657	908.5447331246173	51.941	0.25772	51.758	51.629	51.887	-0.18369					6	4	2	0	0	0	0.02256	1	19977	19977		93.883	30.321	1	11251000			19200	5478	12039	12096	18429	18429					0.0804014356266407
LLAETHYQL	9	Unmodified	_LLAETHYQL_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	HCT116MG_D190212_S2	2	544.40625	2	544.292756	1086.57096	0.56878	0.00030958	0.41777	0.00022739	0.98655	0.00053697	544.2931323636863	41.89	0.15586	41.822	41.705	41.861	-0.068195					4	2	2	0	0	0	0.020353	1	15829	15829		96.111	28.767	1	8295300			19201	3211	12040	12097	18430	18430					0.031137256147076187
LLAGALVV	8	Unmodified	_LLAGALVV_					0	0	0			REV__ENSG00000150753|ENST00000280326|CCT5	REV__ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	HCT116MG_D190212_S2	2	755.5028076171875	1	755.502552	754.495276	1.0568	0.00079844	-0.42438	-0.00032062	0.63246	0.00047782	755.5020199888893	55.851	0.25807	55.665	55.535	55.793	-0.18565					7	4	2	0	0	0	0.59885	1	21563	21563		32.454	0	1	44155000	+		19202	12586	12041	12098	18431	18431					0.1082079322508207
LLAKAAPT	8	Unmodified	_LLAKAAPT_					0	0	0			REV__nc|ENSG00000070814|Q13428-2|TCOF1	REV__nc|ENSG00000070814|Q13428-2|TCOF1	MSMS	HCT116MG_D190212_S4	4	392.7486267089844	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.954	1	52.614	52.114	53.114	-0.34023								0	0	0	0.8837	1	19756	19756		0.69038	0	1		+		19203	10759	12042	12099	18432	18432					0.0850360521968696
LLAKEVQLV	9	Unmodified	_LLAKEVQLV_					0	0	0		EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000585906.5_1_18:43437816-43497657:-|nuORF;ENST00000590884.5_1_18:43437816-43458370:-|nuORF	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	506.8238525390625	2	506.823692	1011.63283	0.36013	0.00018252	-0.051118	-2.5908E-05	0.30901	0.00015662	506.8234656786649	45.477	0.30905	45.385	45.205	45.514	-0.092472					14	5	4	0	0	0	0.057285	1	17283	17283		71.134	0	1	89235000			19204	4139	12043	12100	18433	18433					0.12748077033859317
LLALLVFCL	9	Unmodified	_LLALLVFCL_					0	0	0		nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	MULTI-MSMS	HCT116MG_D190212_S2	2	503.8382263183594	2	502.814282	1003.61401	0.60865	0.00030604	-0.21517	-0.00010819	0.39348	0.00019785	502.81405882424656	52.304	1.5481	52.117	51.472	53.02	-0.18726					98	29	5	0	0	0	0.74258	1	20010	20010		2.3027	0	1	333150000			19205	3786	12044	12101	18434	18434					0.11234824138421118
LLALLVFCL	9	Unmodified	_LLALLVFCL_					0	0	0		nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	502.814282	1003.61401	0.60865	0.00030604	-0.21517	-0.00010819	0.39348	0.00019785	502.81405882424656	52.304	1.5481	52.117	51.472	53.02	-0.18726	0	0	NaN	2.3027	98	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333150000			19206	3786	12044	12101							0.11234824138421118
LLANYIFFRAR	11	Unmodified	_LLANYIFFRAR_					0	0	0		SERPINA12|p.N267Kfs*10|1|0.2|ENSG00000165953|chr14:94496477-94496478|-/T|frameshift_variant;ENSG00000165953|ENST00000677451|SERPINA12	SERPINA12|p.N267Kfs*10|1|0.2|ENSG00000165953|chr14:94496477-94496478|-/T|frameshift_variant	SERPINA12|p.N267Kfs*10|1|0.2|ENSG00000165953|chr14:94496477-94496478|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	692.629638671875	2	692.398422	1382.78229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.947	1	46.825	46.325	47.325	-0.12175								0	0	0	0.92235	1	17896	17896		17.113	4.8722	1				19207	4812	12045	12102	18435	18435					0.10621022376449218
LLARLRRRLYT	11	Unmodified	_LLARLRRRLYT_					0	0	0		ENST00000464041.5_1_3:195605455-195619614:-|nuORF	ENST00000464041.5_1_3:195605455-195619614:-|nuORF	ENST00000464041.5_1_3:195605455-195619614:-|nuORF	MSMS	HCT116MG_D190212_S3	3	477.6423645019531	3	477.640405	1429.89939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.556	1	49.24	48.74	49.74	-0.31596								0	0	0	0.96121	1	18664	18664		0.45452	0.046251	1				19208	8078	12046	12103	18436	18436					0.20163180316080798
LLARNIHVIRR	11	Unmodified	_LLARNIHVIRR_					0	0	0		nc|ENSG00000100983|P48637-2|GSS;ENSG00000100983|ENST00000651619|GSS	nc|ENSG00000100983|P48637-2|GSS	nc|ENSG00000100983|P48637-2|GSS	MSMS	HCT116MG_D190212_S4	4	454.292724609375	3	454.293117	1359.85752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.982	1	59.711	59.211	60.211	-0.27156								0	0	0	0.96192	1	22587	22587		0.08335	0	1				19209	1746	12047	12104	18437	18437					0.19198624627506433
LLASVPVL	8	Unmodified	_LLASVPVL_					0	0	0		ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant	ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant	ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	811.0694580078125	1	811.528767	810.521491	1.3689	0.0011109	-0.81253	-0.00065939	0.55641	0.00045154	811.5281341865615	46.762	0.20627	46.651	46.522	46.729	-0.11121					6	3	2	0	0	0	0.29313	1	17818	17818		59.795	0	1	16573000			19210	18737	12048	12105	18438	18438					0.10865062396555913
LLASVPVL	8	Unmodified	_LLASVPVL_					0	0	0		ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant	ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant	ZNF624|p.I325Sfs*167|1|0.46|ENSG00000197566|chr17:16623913-16623913|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	406.26824951171875	2	406.268022	810.521491	0.35861	0.00014569	-0.45983	-0.00018681	-0.10122	-4.1121E-05	406.26775590433755	46.762	0.30876	46.651	46.471	46.78	-0.11121					9	5	2	0	0	0	0.37136	1	17834	17834		52.693	0	1	32768000			19211	18737	12048	12105	18439	18439					0.10865062396555913
LLAWAGVS	8	Unmodified	_LLAWAGVS_					0	0	0		nc|ENSG00000290831|Q63ZY6-2|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6-6|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;ENST00000485741.6_1_7:72418925-72423926:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF	nc|ENSG00000290831|Q63ZY6-2|NSUN5P2	nc|ENSG00000290831|Q63ZY6-2|NSUN5P2	MSMS	HCT116MG_D190212_S2	2	408.7343444824219	2	408.734346	815.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.996	1	41.928	41.428	42.428	-0.068199								0	0	0	0.8396	1	15884	15884		19.439	2.3524	1				19212	7589	12049	12106	18440	18440					0.03903032185621669
LLAYFYLIL	9	Unmodified	_LLAYFYLIL_					0	0	0			REV__FGG|p.R8Q|1|0.27|ENSG00000171557|chr4:154612587-154612587|C/T|missense_variant	REV__FGG|p.R8Q|1|0.27|ENSG00000171557|chr4:154612587-154612587|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	564.7938842773438	2	564.838811	1127.66307	0.63859	0.0003607	2.0629	0.0011652	2.7015	0.0015259	565.3419344094333	34.738	0.25866	34.58	34.399	34.657	-0.15834					7	4	2	0	0	0	0.20836	1	12902	12902		20.871	0	1	8481900	+		19213	13352	12050	12107	18441	18441					0.10434435699039568
LLCALKLYV	9	Unmodified	_LLCALKLYV_					0	0	0		CAPZA3|p.T144Lfs*8|1|0.07|ENSG00000177938|chr12:18738694-18738694|A/-|frameshift_variant;ENSG00000177938|ENST00000317658|CAPZA3	CAPZA3|p.T144Lfs*8|1|0.07|ENSG00000177938|chr12:18738694-18738694|A/-|frameshift_variant	CAPZA3|p.T144Lfs*8|1|0.07|ENSG00000177938|chr12:18738694-18738694|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	518.81884765625	2	518.317189	1034.61982	0.46589	0.00024148	-0.13409	-6.9502E-05	0.33179	0.00017197	518.3170024299927	46.695	2.3672	46.584	45.597	47.964	-0.11122					121	45	4	0	0	0	0.74258	1	18033	18033		2.3027	0	1	159940000			19214	325	12051	12108	18442	18442					0.10389922650097105
LLCCTFQPV	9	Unmodified	_LLCCTFQPV_					0	0	0		nc|ENSG00000101940|Q9H1Z4-2|WDR13;ENSG00000101940|ENST00000376729|WDR13	nc|ENSG00000101940|Q9H1Z4-2|WDR13	nc|ENSG00000101940|Q9H1Z4-2|WDR13	MULTI-MSMS	HCT116MG_D190212_S4	4	513.2127075195312	2	512.253731	1022.49291	0.15592	7.9869E-05	-0.097709	-5.0052E-05	0.058207	2.9817E-05	512.2536456463565	34.653	0.974	34.267	33.932	34.906	-0.38558					38	18	3	0	0	0	0.55919	1	12800	12800		13.508	5.5977	1	6637000			19215	1814	12052	12109	18443	18443					-0.017437465665352647
LLCIKKLF	8	Unmodified	_LLCIKKLF_					0	0	0			REV__ENST00000418019.5_1_2:219423366-219427504:-|nuORF	REV__ENST00000418019.5_1_2:219423366-219427504:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	489.31414794921875	2	489.314449	976.614345	-0.024051	-1.1768E-05	0.17032	8.3342E-05	0.14627	7.1574E-05	489.31449230062964	51.837	2.6505	51.492	50.946	53.597	-0.34547					154	50	5	0	0	0	0.86388	1	20138	20138		2.8892	0	1	695170000	+		19216	15493	12053	12110	18444	18444					0.1251024385828714
LLCIVVLMV	9	Unmodified	_LLCIVVLMV_					0	0	0			REV__ENSG00000228594|ENST00000422725|FNDC10	REV__ENSG00000228594|ENST00000422725|FNDC10	MULTI-SECPEP	HCT116MG_D190212_S2	2	501.78369140625	2	501.808142	1001.60173	0.50027	0.00025104	1.3467	0.00067577	1.8469	0.00092681	501.8088573193745	34.96	0.41449	34.801	34.657	35.072	-0.15834					13	7	2	0	0	0	0.23177	1	13007	13007		14.582	1.0738	1	16413000	+		19217	14314	12054	12111	18445	18445					0.10099464403742786
LLCPKLFL	8	Unmodified	_LLCPKLFL_					0	0	0			REV__nc|ENSG00000177575|Q86VB7-4|CD163	REV__nc|ENSG00000177575|Q86VB7-4|CD163	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7932434082031	2	473.793349	945.572146	0.58568	0.00027749	-1.4694	-0.0006962	-0.88373	-0.00041871	473.7929021898372	47.704	0.31007	47.572	47.48	47.79	-0.13281					9	5	2	0	0	0	0.81821	1	18275	18275		9.3474	0	1	12666000	+		19218	17226	12055	12112	18446	18446					0.09718268449910283
LLDANYKCI	9	Unmodified	_LLDANYKCI_					0	0	0			REV__SETD5|p.D823Y|1|0.15|ENSG00000168137|chr3:9453859-9453859|G/T|missense_variant	REV__SETD5|p.D823Y|1|0.15|ENSG00000168137|chr3:9453859-9453859|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	526.7742919921875	2	526.775885	1051.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.918	1	57.743	57.243	58.243	-0.17494								0	0	0	0.76718	1	22372	22372		10.824	2.9138	1		+		19219	17509	12056	12113	18447	18447					0.013509808512935706
LLDDTGLAY	9	Unmodified	_LLDDTGLAY_					0	0	0		ENST00000473626.1_1_2:219457053-219457431:+|nuORF;nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	980.4935302734375	1	980.493504	979.486227	0.59209	0.00058054	-0.0010337	-1.0136E-06	0.59106	0.00057953	980.4933405240055	48.009	0.36478	47.693	47.462	47.827	-0.31596					14	6	3	0	0	0	0.1037	1	18041	18041		57.471	0	1	10791000			19220	3868	12057	12114	18448	18448					-0.004336449219067617
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant;SPECC1L|p.N785Mfs*11|1|0.38|ENSG00000100014|chr22:24330383-24330383|A/-|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	563.7808227539062	2	563.780013	1125.54547	0.47053	0.00026527	0.26757	0.00015085	0.7381	0.00041613	563.7801960502475	32.768	0.29416	32.768	32.639	32.933	0					13	5	4	0	0	0	0.003294	2	12104	12100;12104		180.01	117.44	1	97934000			19221	1654	12058	12115	18449;18450	18450					-0.012277489076950587
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant;SPECC1L|p.N785Mfs*11|1|0.38|ENSG00000100014|chr22:24330383-24330383|A/-|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	563.7802734375	2	563.780013	1125.54547	0.64567	0.00036401	-0.30122	-0.00016982	0.34445	0.00019419	563.7797074682571	32.925	0.30994	32.714	32.586	32.896	-0.21135					14	5	4	0	0	0	6.5048E-05	1	12202	12202		205.38	142.81	1	357810000			19222	1654	12058	12115	18451	18451					-0.012277489076950587
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant;SPECC1L|p.N785Mfs*11|1|0.38|ENSG00000100014|chr22:24330383-24330383|A/-|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	376.1893615722656	3	376.189101	1125.54547	0.0095016	3.5744E-06	-0.0025348	-9.5355E-07	0.0069669	2.6209E-06	376.1891010859893	32.921	0.36152	32.71	32.586	32.948	-0.21135					10	6	3	0	0	0	0.0063744	1	12207	12207		99.755	66.97	1	85689000			19223	1654	12058	12115	18452	18452					-0.012277489076950587
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant;SPECC1L|p.N785Mfs*11|1|0.38|ENSG00000100014|chr22:24330383-24330383|A/-|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	563.7809448242188	2	563.780013	1125.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.154	1	32.869	32.369	33.369	-0.28511								0	0	0	0.00092749	1	12165	12165		128.37	72.188	1				19224	1654	12058	12115	18453	18453					-0.012277489076950587
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant;SPECC1L|p.N785Mfs*11|1|0.38|ENSG00000100014|chr22:24330383-24330383|A/-|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	SPECC1L|p.I644Tfs*3|1|0.09|ENSG00000100014|chr22:24322910-24322911|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	376.189101	1125.54547	-0.025009	-9.4081E-06	0.51194	0.00019259	0.48693	0.00018318	376.1892770227718	32.768	0.24807	32.768	32.639	32.887	0	0.029163	8.3812E-05	NaN	99.755	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17080000			19225	1654	12058	12115							-0.012277489076950587
LLDEPTNHL	9	Unmodified	_LLDEPTNHL_					0	0	0		nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2	nc|ENSG00000285292|Q9UG63-2|ABCF2	nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-MSMS	HCT116MG_D190212_S1	1	526.2758178710938	2	526.274564	1050.53457	0.16282	8.5688E-05	0.77635	0.00040857	0.93917	0.00049426	526.7763905079378	36.86	0.41555	36.86	36.627	37.042	0					10	7	2	0	0	0	0.011082	1	13766	13766		110.67	0	1	19472000			19226	973	12059	12116	18454	18454					0.011328487179980584
LLDEPTNHL	9	Unmodified	_LLDEPTNHL_					0	0	0		nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2	nc|ENSG00000285292|Q9UG63-2|ABCF2	nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-MSMS	HCT116MG_D190212_S2	2	526.275146484375	2	526.274564	1050.53457	0.66826	0.00035169	0.19222	0.00010116	0.86048	0.00045285	526.2745342644288	35.785	0.30817	35.643	35.489	35.797	-0.14245					9	5	2	0	0	0	0.034046	2	13387	13387;13401		82.529	0	1	15983000			19227	973	12059	12116	18455;18456	18455					0.011328487179980584
LLDEPTNHL	9	Unmodified	_LLDEPTNHL_					0	0	0		nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2	nc|ENSG00000285292|Q9UG63-2|ABCF2	nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-MSMS	HCT116MG_D190212_S2	2	526.2747192382812	2	526.274564	1050.53457	0.41358	0.00021766	-0.14657	-7.7137E-05	0.26701	0.00014052	526.27454627912	36.848	0.36121	36.733	36.55	36.912	-0.11478					16	6	4	0	0	0	0.016744	1	13815	13815		99.755	0	1	49345000			19228	973	12059	12116	18457	18457					0.011328487179980584
LLDGKDGAPAP	11	Unmodified	_LLDGKDGAPAP_					0	0	0			REV__ENST00000527160.1_1_11:614111-614513:-|nuORF	REV__ENST00000527160.1_1_11:614111-614513:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2826538085938	2	527.282389	1052.55022	0.30426	0.00016043	1.5789	0.00083252	1.8832	0.00099295	527.2824323667639	21.749	0.41606	21.364	21.167	21.583	-0.38503					15	7	3	0	0	0	0.69749	1	7703	7703		22.736	4.5899	1	8260100	+		19229	13848	12060	12117	18458	18458					0.026051352350577872
LLDGPSDC	8	Unmodified	_LLDGPSDC_					0	0	0			REV__ENST00000496773.1_1_21:11039429-11058260:-|nuORF	REV__ENST00000496773.1_1_21:11039429-11058260:-|nuORF	MSMS	HCT116MG_D190212_S2	2	410.18096923828125	2	410.181286	818.348019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.937	1	38.853	38.353	39.353	-0.084618								0	0	0	0.8837	1	14639	14639		2.8892	0	1		+		19230	10649	12061	12118	18459	18459					-0.06842091442024412
LLDGVTVSL	9	Unmodified	_LLDGVTVSL_					0	0	0		sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1	sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1	sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	458.77142333984375	2	458.771126	915.527698	0.072229	3.3136E-05	-0.77969	-0.0003577	-0.70746	-0.00032456	458.77127235053615	37.032	0.20771	37.032	36.886	37.094	0					6	3	2	0	0	0	0.050578	1	13828	13828		74.423	0	1	11889000			19231	18221	12062	12119	18460	18460					0.06655535837421667
LLDGVTVSL	9	Unmodified	_LLDGVTVSL_					0	0	0		sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1	sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1	sp|Q6SW82|UL49_HCMVMProteinUL49OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL49PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	458.7713317871094	2	458.771126	915.527698	0.091704	4.2071E-05	-2.4966	-0.0011454	-2.4049	-0.0011033	458.77108931010025	37.057	0.41177	36.942	36.757	37.168	-0.11478					15	7	3	0	0	0	0.023611	1	13880	13880		92.822	10.293	1	59508000			19232	18221	12062	12119	18461	18461					0.06655535837421667
LLDIRSEY	8	Unmodified	_LLDIRSEY_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11;ANXA11|p.R475W|1|0.47|ENSG00000122359|chr10:80157676-80157676|G/A|missense_variant	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7718505859375	2	504.771657	1007.52876	0.4807	0.00024265	0.1282	6.4711E-05	0.6089	0.00030736	504.77168030163074	42.007	0.57	41.939	41.653	42.223	-0.068199					24	10	4	0	0	0	0.058063	1	15890	15890		114.65	11.296	1	313130000			19233	2759	12063	12120	18462	18462					0.02529750206326753
LLDIRSEY	8	Unmodified	_LLDIRSEY_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11;ANXA11|p.R475W|1|0.47|ENSG00000122359|chr10:80157676-80157676|G/A|missense_variant	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MULTI-MSMS	HCT116MG_D190212_S2	2	1008.53662109375	1	1008.53604	1007.52876	0.62625	0.0006316	-0.11832	-0.00011933	0.50793	0.00051226	1008.536502958329	42.007	0.25982	41.939	41.808	42.068	-0.068199					6	4	2	0	0	0	0.027354	1	15914	15914		147.06	20.493	1	40395000			19234	2759	12063	12120	18463	18463					0.02529750206326753
LLDIRSEY	8	Unmodified	_LLDIRSEY_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11;ANXA11|p.R475W|1|0.47|ENSG00000122359|chr10:80157676-80157676|G/A|missense_variant	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MSMS	HCT116MG_D190212_S3	3	504.7718200683594	2	504.771657	1007.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.33	1	42.026	41.526	42.526	-0.30352								0	0	0	0.08908	1	15765	15765		85.642	7.4921	1				19235	2759	12063	12120	18464	18464					0.02529750206326753
LLDLDEELRY	10	Unmodified	_LLDLDEELRY_					0	0	0		nc|ENSG00000119650|Q96FT9-3|IFT43;ENST00000554026.5_1_14:76452129-76542971:+|nuORF;nc|ENSG00000119650|Q96FT9-4|IFT43;ENST00000555305.5_1_14:76452129-76548711:+|nuORF;ENSG00000119650|ENST00000314067|IFT43;nc|ENSG00000119650|Q96FT9-2|IFT43	nc|ENSG00000119650|Q96FT9-3|IFT43	nc|ENSG00000119650|Q96FT9-3|IFT43	MULTI-MSMS	HCT116MG_D190212_S2	2	639.8323364257812	2	639.832443	1277.65033	0.39824	0.0002548	0.06832	4.3713E-05	0.46656	0.00029852	639.832339484399	53.077	0.36308	52.887	52.706	53.07	-0.18922					10	6	2	0	0	0	0.0087358	2	20425	20378;20425		155.95	112.18	1	33766000			19236	2653	12064	12121	18465;18466	18466					0.02261327778182931
LLDPRIYYI	9	Unmodified	_LLDPRIYYI_					0	0	0		ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF	ENSG00000144063|ENST00000272462|MALL	ENSG00000144063|ENST00000272462|MALL	MULTI-MSMS	HCT116MG_D190212_S2	2	583.335205078125	2	583.334424	1164.6543	0.48766	0.00028447	0.3331	0.00019431	0.82076	0.00047878	583.3345855179092	55.084	0.35647	54.896	54.662	55.019	-0.18797					13	6	3	0	0	0	0.082877	1	21255	21255		61.602	27.2	1	124880000			19237	3851	12065	12122	18467	18467					0.07855462062548213
LLDPRIYYI	9	Unmodified	_LLDPRIYYI_					0	0	0		ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF	ENSG00000144063|ENST00000272462|MALL	ENSG00000144063|ENST00000272462|MALL	MULTI-MATCH	HCT116MG_D190212_S1	1		2	583.334424	1164.6543	0.65122	0.00037988	0.039219	2.2878E-05	0.69044	0.00040275	583.3345113067174	54.917	0.20372	54.917	54.79	54.994	0	0.01071	-0.00011346	NaN	61.602	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25239000			19238	3851	12065	12122							0.07855462062548213
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENST00000538784.2_1_12:132635515-132636943:+|nuORF;POU2F1-NOC4L|1|fusion;NOC4L|p.P381Lfs*103|1|0.35|ENSG00000184967|chr12:132151548-132151548|C/-|frameshift_variant;ENSG00000184967|ENST00000330579|NOC4L	ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENST00000538784.2_1_12:132635515-132636943:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7847290039062	2	513.784567	1025.55458	0.13392	6.8805E-05	-0.0071628	-3.6801E-06	0.12676	6.5125E-05	513.7844246631614	53.843	0.30994	53.654	53.48	53.79	-0.18939					10	5	3	0	0	0	0.058138	1	20730	20730		70.716	34.671	1	26702000			19239	5793	12066	12123	18468	18468					0.04282644448608153
LLDPTNVFI	9	Unmodified	_LLDPTNVFI_					0	0	0		ENST00000461438.5_1_10:120917240-120925159:-|nuORF;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	MSMS	HCT116MG_D190212_S2	2	516.2758178710938	2	516.292225	1030.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.6	1	57.425	56.925	57.925	-0.17494								0	0	0	0.044501	1	22244	22244		71.922	0	1				19240	5726	12067	12124	18469	18469					0.05583511245822592
LLDQGQLNKY	10	Unmodified	_LLDQGQLNKY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S1	1	596.823974609375	2	596.322045	1190.62954	0.63687	0.00037978	-0.044718	-2.6667E-05	0.59215	0.00035311	596.3219943657318	36.08	0.26045	36.08	35.942	36.202	0					14	4	4	0	0	0	5.4181E-11	1	13440	13440		228.37	154.17	1	48547000			19241	3710	12068	12125	18470	18470					0.04184782189190628
LLDQGQLNKY	10	Unmodified	_LLDQGQLNKY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	596.3223266601562	2	596.322045	1190.62954	0.96855	0.00057757	0.18936	0.00011292	1.1579	0.00069048	596.3220982570986	36.121	0.5695	35.993	35.761	36.33	-0.12799					27	10	5	0	0	0	5.4181E-11	2	13499	13482;13499		228.37	158.04	1	413470000			19242	3710	12068	12125	18471;18472	18472					0.04184782189190628
LLDQGQLNKY	10	Unmodified	_LLDQGQLNKY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S3	3	596.3231201171875	2	596.322045	1190.62954	0.27855	0.0001661	0.32921	0.00019632	0.60776	0.00036242	596.3221860466253	36.316	0.41619	36.016	35.834	36.25	-0.30042					23	7	4	0	0	0	5.4181E-11	1	13398	13398		228.37	158.04	1	86516000			19243	3710	12068	12125	18473	18473					0.04184782189190628
LLDQGQLNKY	10	Unmodified	_LLDQGQLNKY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;CLTC-CEP95|1|fusion;CLTC|p.D632Yfs*7|1|0.15|ENSG00000141367|chr17:59666589-59666590|-/TTACA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S4	4	596.322265625	2	596.322045	1190.62954	1.1488	0.00068507	-0.66582	-0.00039704	0.483	0.00028802	596.3216046870007	36.433	0.36305	36.048	35.866	36.229	-0.38558					13	6	3	0	0	0	5.4181E-11	1	13319	13319		228.37	154.17	1	25022000			19244	3710	12068	12125	18474	18474					0.04184782189190628
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MSMS	HCT116MG_D190212_S2	2	524.3143310546875	2	524.313492	1046.61243	0.402	0.00021077	0.43134	0.00022616	0.83334	0.00043693	524.3135878883752	54.365	0.20459	54.176	54.048	54.252	-0.1894					11	3	4	0	0	0	0.0082095	1	20935	20935		117.76	48.656	1	203700000			19245	2615	12069	12126	18475	18475					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MSMS	HCT116MG_D190212_S2	2	1047.6201171875	1	1047.61971	1046.61243	0.71011	0.00074392	-0.37629	-0.00039421	0.33381	0.00034971	1047.6188603932553	54.365	0.20459	54.176	54.048	54.252	-0.1894					5	3	2	0	0	0	0.0201	1	20953	20953		96.367	46.434	1	30569000			19246	2615	12069	12126	18476	18476					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MSMS	HCT116MG_D190212_S3	3	524.3136596679688	2	524.313492	1046.61243	0.31604	0.0001657	0.099901	5.238E-05	0.41594	0.00021808	524.3135259949219	54.513	0.2092	54.217	54.086	54.295	-0.29587					6	3	2	0	0	0	0.082877	1	20681	20681		61.602	7.7691	1	11582000			19247	2615	12069	12126	18477	18477					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MATCH	HCT116MG_D190212_S1	1		2	524.313492	1046.61243	0.47608	0.00024962	-0.25867	-0.00013562	0.21742	0.00011399	524.3132477303832	54.153	0.20536	54.153	54.026	54.231	0	-0.028503	-0.00032354	NaN	117.76	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28072000			19248	2615	12069	12126							0.09098906374038052
LLDRKGHVR	9	Unmodified	_LLDRKGHVR_					0	0	0		ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	547.3334350585938	2	547.333082	1092.65161	0.53823	0.00029459	-0.064106	-3.5087E-05	0.47412	0.0002595	547.332868457868	21.359	0.15827	21.359	21.279	21.437	0					4	2	2	0	0	0	0.37539	1	7532	7532		24.021	4.7636	1	10059000			19249	7788	12070	12127	18478	18478					0.10899051448268438
LLDRKGHVR	9	Unmodified	_LLDRKGHVR_					0	0	0		ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	547.3339233398438	2	547.333082	1092.65161	0.56167	0.00030742	0.51803	0.00028354	1.0797	0.00059096	547.3336402041994	21.515	0.20765	21.296	21.166	21.374	-0.21832					8	3	3	0	0	0	0.31596	1	7436	7436		29.082	0.59474	1	5746800			19250	7788	12070	12127	18479	18479					0.10899051448268438
LLDRKGHVR	9	Unmodified	_LLDRKGHVR_					0	0	0		ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	547.333082	1092.65161	0.53823	0.00029459	-0.064106	-3.5087E-05	0.47412	0.0002595	547.332868457868	21.359	0.15827	21.359	21.279	21.437	0	-0.0019062	-0.00088579	NaN	29.082	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10059000			19251	7788	12070	12127							0.10899051448268438
LLDRKGHVR	9	Unmodified	_LLDRKGHVR_					0	0	0		ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	547.333082	1092.65161	0.30472	0.00016678	1.2216	0.00066862	1.5263	0.0008354	547.8355076148015	21.154	0.20811	21.179	21.069	21.277	0.024529	-0.18192	0.00052162	NaN	29.082	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3958900			19252	7788	12070	12127							0.10899051448268438
LLDRKGHVR	9	Unmodified	_LLDRKGHVR_					0	0	0		ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	ENST00000421427.5_1_2:188394185-188419049:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	547.333082	1092.65161	0.56167	0.00030742	0.51803	0.00028354	1.0797	0.00059096	547.3336402041994	21.515	0.20765	21.296	21.166	21.374	-0.21832	-0.064696	-0.00024854	NaN	29.082	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5746800			19253	7788	12070	12127							0.10899051448268438
LLDRLDEKY	9	Unmodified	_LLDRLDEKY_					0	0	0			REV__KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant	REV__KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	582.8157958984375	2	582.816596	1163.61864	-0.091922	-5.3574E-05	-0.29429	-0.00017152	-0.38621	-0.00022509	582.8161838505722	38.045	0.20766	38.045	37.916	38.123	0					5	3	2	0	0	0	0.26536	1	14260	14260		34.402	2.3642	1	8197300	+		19254	13033	12071	12128	18480	18480					0.04337379814887754
LLDRRRRRRRR	11	Unmodified	_LLDRRRRRRRR_					0	0	0			REV__SLC24A3|p.E89Sfs*85|1|0.11|ENSG00000185052|chr20:19281079-19281080|-/ATCATTCACAG|frameshift_variant	REV__SLC24A3|p.E89Sfs*85|1|0.11|ENSG00000185052|chr20:19281079-19281080|-/ATCATTCACAG|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	804.5761108398438	2	805.014538	1608.01452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.938	1	53.748	53.248	54.248	-0.1894								0	0	0	0.96163	1	20754	20754		0.23584	0.028987	1		+		19255	13825	12072	12129	18481	18481					0.23483722290393416
LLDSLALHLV	10	Unmodified	_LLDSLALHLV_					0	0	0			REV__ENSG00000183134|ENST00000332539|PTGDR2	REV__ENSG00000183134|ENST00000332539|PTGDR2	MULTI-MSMS	HCT116MG_D190212_S3	3	547.333251953125	2	547.334424	1092.6543	0.30472	0.00016678	-1.2315	-0.00067405	-0.9268	-0.00050727	547.8355076148015	21.154	0.20811	21.179	21.069	21.277	0.024529					5	3	2	0	0	0	0.48679	1	7383	7383		36.127	3.3413	1	3958900	+		19256	13747	12073	12130	18482	18482					0.11167462062553568
LLDSSQKNLY	10	Unmodified	_LLDSSQKNLY_					0	0	0		ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	MSMS	HCT116MG_D190212_S3	3	590.8143920898438	2	590.814053	1179.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.602	1	35.303	34.803	35.803	-0.29922								0	0	0	0.013449	1	13131	13131		155.95	81.025	1				19257	5977	12074	12131	18483	18483					0.030930759523016604
LLDVLVLP	8	Unmodified	_LLDVLVLP_					0	0	0		PCDH20|p.L177I|1|0.41|ENSG00000280165|chr13:61413570-61413570|G/T|missense_variant;PCDH20|p.L249Yfs*24|1|0.05|ENSG00000280165|chr13:61413353-61413353|A/-|frameshift_variant;ENSG00000280165|ENST00000409204|PCDH20	PCDH20|p.L177I|1|0.41|ENSG00000280165|chr13:61413570-61413570|G/T|missense_variant	PCDH20|p.L177I|1|0.41|ENSG00000280165|chr13:61413570-61413570|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	441.2879943847656	2	441.288954	880.563355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.367	1	58.197	57.697	58.697	-0.1703								0	0	0	0.8837	1	22556	22556		5.2307	0	1				19258	6695	12075	12132	18484	18484					0.11829618085073434
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	HCT116MG_D190212_S1	1	898.52490234375	1	898.52441	897.517133	0.57905	0.00052029	-1.1556	-0.0010384	-0.57657	-0.00051806	898.5232404552902	48.743	0.41162	48.743	48.563	48.974	0					24	7	4	0	0	0	0.023611	1	18539	18539		92.822	22.107	1	834910000			19259	6457	12076	12133	18485	18485					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	HCT116MG_D190212_S2	2	449.7658996582031	2	449.765843	897.517133	0.17489	7.8658E-05	-0.065092	-2.9276E-05	0.10979	4.9381E-05	449.76571927320464	48.955	0.40486	48.801	48.58	48.985	-0.15405					10	7	2	0	0	0	0.013464	1	18735	18735		104.8	41.236	1	60937000			19260	6457	12076	12133	18486	18486					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	HCT116MG_D190212_S3	3	898.5244750976562	1	898.52441	897.517133	0.97764	0.00087843	-0.25077	-0.00022532	0.72687	0.00065311	898.5240888578843	49.212	0.4744	48.896	48.657	49.132	-0.31596					21	8	4	0	0	0	0.023611	3	18513	18481;18513;18602		92.822	35.592	1	40517000			19261	6457	12076	12133	18487;18488;18489	18488					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	HCT116MG_D190212_S4	4	898.5249633789062	1	898.52441	897.517133	0.52231	0.00046931	0.096176	8.6417E-05	0.61849	0.00055572	898.5244962478707	49.257	0.20736	48.892	48.711	48.918	-0.365					6	3	2	0	0	0	0.035914	1	18271	18271		81.613	24.142	1	4541800			19262	6457	12076	12133	18490	18490					0.06427553182993506
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENSG00000150054|ENST00000683449|MPP7;ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	MULTI-MSMS	HCT116MG_D190212_S1	1	511.2876281738281	2	511.287474	1020.5604	0.42931	0.0002195	0.15677	8.0152E-05	0.58607	0.00029965	511.2875088900792	37.102	0.31122	37.102	36.886	37.197	0					8	5	2	0	0	0	0.041798	1	13884	13884		78.728	2.9672	1	25676000			19263	4079	12077	12134	18491	18491					0.05093742960286818
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENSG00000150054|ENST00000683449|MPP7;ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	MULTI-MSMS	HCT116MG_D190212_S2	2	511.28778076171875	2	511.287474	1020.5604	0.20732	0.000106	0.26969	0.00013789	0.47701	0.00024389	511.2875318977698	37.122	0.56715	37.012	36.658	37.225	-0.11051					19	10	3	0	0	0	0.020353	1	13939	13939		96.111	27.006	1	127690000			19264	4079	12077	12134	18492	18492					0.05093742960286818
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENSG00000150054|ENST00000683449|MPP7;ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	MULTI-MSMS	HCT116MG_D190212_S3	3	511.2875671386719	2	511.287474	1020.5604	0.23674	0.00012104	-0.01716	-8.7736E-06	0.21958	0.00011227	511.2874446398208	37.301	0.46795	36.999	36.769	37.237	-0.30137					18	7	4	0	0	0	0.011082	2	13835	13835;13892		110.67	3.7345	1	36356000			19265	4079	12077	12134	18493;18494	18493					0.05093742960286818
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENSG00000150054|ENST00000683449|MPP7;ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	MULTI-MSMS	HCT116MG_D190212_S4	4	511.28778076171875	2	511.287474	1020.5604	0.095285	4.8718E-05	0.23781	0.00012159	0.3331	0.00017031	511.28741958018327	37.433	0.2569	37.049	36.874	37.131	-0.3839					9	4	3	0	0	0	0.011082	1	13743	13743		110.67	14.308	1	13113000			19266	4079	12077	12134	18495	18495					0.05093742960286818
LLDVTPLSL	9	Unmodified	_LLDVTPLSL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000508003.1_1_5:137895468-137897466:-|nuORF;tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000113013|ENST00000297185|HSPA9	ENSG00000109971|ENST00000534624|HSPA8	MULTI-SECPEP	HCT116MG_D190212_S1	1	970.582763671875	1	970.581925	969.574648	0.58545	0.00056822	-0.038248	-3.7123E-05	0.5472	0.0005311	970.582005150888	57.645	0.20704	57.645	57.516	57.723	0					7	3	3	0	0	0	9.3107E-05	1	22199	22199		133.7	21.109	1	36994000			19267	2228;2366	12078	12135	18496	18496					0.08864395388582125
LLDVTPLSL	9	Unmodified	_LLDVTPLSL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000508003.1_1_5:137895468-137897466:-|nuORF;tr|U7T027|U7T027_FUSNUChaperoneproteinDnaKOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dnaKPE=2SV=1;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000113013|ENST00000297185|HSPA9	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	HCT116MG_D190212_S2	2	970.5816040039062	1	970.581925	969.574648	0.70628	0.0006855	0.18616	0.00018068	0.89244	0.00086618	970.58169905867	57.828	0.20925	57.653	57.521	57.73	-0.17494					11	3	4	0	0	0	0.004194	1	22355	22355		147.83	14.129	1	64797000			19268	2228;2366	12078	12135	18497	18497					0.08864395388582125
LLEDAIPS	8	Unmodified	_LLEDAIPS_					0	0	0		ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MSMS	HCT116MG_D190212_S3	3	429.08868408203125	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.612	1	24.528	24.028	25.028	-0.083694								0	0	0	0.8837	1	8748	8748		9.3474	0	1				19269	2639	12079	12136	18498	18498					0.02022987394957454
LLEDKHFQ	8	Unmodified	_LLEDKHFQ_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S2	2	515.27197265625	2	515.271824	1028.5291	0.39453	0.00020329	0.15277	7.8718E-05	0.5473	0.00028201	515.2718312759226	27.559	0.20721	27.217	27.088	27.295	-0.34201					5	3	2	0	0	0	0.69106	1	10034	10034		24.021	3.5669	1	12260000			19270	5494	12080	12137	18499	18499					0.015971699261854155
LLEDKHFQSY	10	Unmodified	_LLEDKHFQSY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S1	1	640.3204345703125	2	640.319502	1278.62445	0.75714	0.00048481	0.42471	0.00027195	1.1819	0.00075677	640.3197605222464	32.717	0.4505	32.717	32.534	32.985	0					15	8	3	0	0	0	0.00019917	1	12084	12084		193.01	123.9	1	107130000			19271	5494	12081	12138	18500	18500					-0.0037152167342355824
LLEDKHFQSY	10	Unmodified	_LLEDKHFQSY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S2	2	640.3197021484375	2	640.319502	1278.62445	0.68498	0.0004386	0.34364	0.00022004	1.0286	0.00065864	640.3196873037288	32.874	0.36312	32.663	32.482	32.845	-0.21135					20	6	4	0	0	0	0.004443	1	12170	12170		168.9	108.83	1	410130000			19272	5494	12081	12138	18501	18501					-0.0037152167342355824
LLEDKHFQSY	10	Unmodified	_LLEDKHFQSY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S2	2	427.21575927734375	3	427.215427	1278.62445	0.20931	8.9421E-05	0.53432	0.00022827	0.74363	0.00031769	427.2155202641203	32.874	0.2577	32.663	32.482	32.739	-0.21135					12	4	3	0	0	0	0.14359	1	12185	12185		50.13	20.849	1	110080000			19273	5494	12081	12138	18502	18502					-0.0037152167342355824
LLEFDQSL	8	Unmodified	_LLEFDQSL_					0	0	0			REV__MFI2|p.Y365Tfs*54|2|0.47|ENSG00000163975|chr3:197015506-197015506|G/-|frameshift_variant	REV__MFI2|p.Y365Tfs*54|2|0.47|ENSG00000163975|chr3:197015506-197015506|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	482.7528076171875	2	482.752933	963.491313	0.26763	0.0001292	-0.047782	-2.3067E-05	0.21984	0.00010613	482.7526535489084	55.832	0.21163	55.544	55.411	55.623	-0.28773					5	3	2	0	0	0	0.71835	1	21206	21206		20.871	0	1	3958500	+		19274	12966	12082	12139	18503	18503					0.008106589407248066
LLEIYPWKTQL	11	Unmodified	_LLEIYPWKTQL_					0	0	0			REV__ENSG00000148481|ENST00000277632|MINDY3	REV__ENSG00000148481|ENST00000277632|MINDY3	MSMS	HCT116MG_D190212_S2	2	702.4027709960938	2	702.400295	1402.78604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.583	1	53.394	52.894	53.894	-0.1894								0	0	0	0.82946	1	20610	20610		29.082	2.8134	1		+		19275	12546	12083	12140	18504	18504					0.1007564735964479
LLEKEILYY	9	Unmodified	_LLEKEILYY_					0	0	0		SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	592.8360595703125	2	592.33409	1182.65363	0.54317	0.00032174	-0.39287	-0.00023271	0.15029	8.9025E-05	592.8354358557359	49	0.2079	49	48.871	49.079	0					6	3	2	0	0	0	0.02327	1	18670	18670		93.166	31.808	1	17185000			19276	1821	12084	12141	18505	18505					0.06960622622841584
LLEKEILYY	9	Unmodified	_LLEKEILYY_					0	0	0		SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	592.3350219726562	2	592.33409	1182.65363	0.58141	0.00034439	-0.0082663	-4.8964E-06	0.57314	0.00033949	592.3340629512082	49.114	0.15157	48.96	48.834	48.985	-0.15405					4	2	2	0	0	0	0.17622	1	18795	18795		43.772	13.136	1	80143000			19277	1821	12084	12141	18506	18506					0.06960622622841584
LLENDVSTLGY	11	Unmodified	_LLENDVSTLGY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	HCT116MG_D190212_S1	1	612.311767578125	2	612.311343	1222.60813	0.44595	0.00027306	0.24534	0.00015022	0.69129	0.00042328	612.3114739813873	47.467	0.28577	47.467	47.309	47.595	0					11	5	3	0	0	0	0.038541	1	18040	18040		121.35	67.942	1	28818000			19278	1474	12085	12142	18507	18507					0.005733523698154386
LLENDVSTLGY	11	Unmodified	_LLENDVSTLGY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	HCT116MG_D190212_S2	2	612.3117065429688	2	612.311343	1222.60813	0.78301	0.00047945	-0.0099276	-6.0788E-06	0.77308	0.00047337	612.3113340178354	47.639	0.41346	47.506	47.325	47.738	-0.13281					14	7	3	0	0	0	0.025539	1	18179	18179		128.57	69.205	1	80222000			19279	1474	12085	12142	18508	18508					0.005733523698154386
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S2	2	388.1645812988281	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.141	1	27.811	27.311	28.311	-0.32987								0	0	0	0.95621	1	10252	10252		3.0723	1.4196	1		+		19280	15637	12086	12143	18509	18509					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.254150390625	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.103	1	38.802	38.302	39.302	-0.30137								0	0	0	0.9619	1	14507	14507		0.094841	0.094841	1		+		19281	15637	12086	12143	18510	18510					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2541809082031	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.612	1	40.31	39.81	40.81	-0.30161								0	0	0	0.9619	1	15082	15082		0.094841	0.094841	1		+		19282	15637	12086	12143	18511	18511					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.25396728515625	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.918	1	41.616	41.116	42.116	-0.30257								0	0	0	0.9619	1	15599	15599		0.094841	0.094841	1		+		19283	15637	12086	12143	18512	18512					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.25384521484375	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.139	1	42.834	42.334	43.334	-0.30472								0	0	0	0.9619	1	16090	16090		0.094841	0.094841	1		+		19284	15637	12086	12143	18513	18513					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2537536621094	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.374	1	44.067	43.567	44.567	-0.30759								0	0	0	0.9619	1	16586	16586		0.094841	0.094841	1		+		19285	15637	12086	12143	18514	18514					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2543029785156	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.078	1	44.769	44.269	45.269	-0.30927								0	0	0	0.9619	1	16867	16867		0.094841	0.094841	1		+		19286	15637	12086	12143	18515	18515					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2540283203125	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.458	1	46.146	45.646	46.646	-0.31237								0	0	0	0.96111	1	17420	17420		0.50596	0.047615	1		+		19287	15637	12086	12143	18516	18516					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2540588378906	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.131	1	46.817	46.317	47.317	-0.31405								0	0	0	0.9619	1	17691	17691		0.094841	0.094841	1		+		19288	15637	12086	12143	18517	18517					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2540588378906	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.388	1	48.072	47.572	48.572	-0.31596								0	0	0	0.9619	1	18197	18197		0.094841	0.094841	1		+		19289	15637	12086	12143	18518	18518					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2540283203125	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.02	1	48.704	48.204	49.204	-0.31596								0	0	0	0.9619	1	18450	18450		0.094841	0.094841	1		+		19290	15637	12086	12143	18519	18519					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2541809082031	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.244	1	52.941	52.441	53.441	-0.30305								0	0	0	0.9619	1	20147	20147		0.094841	0.094841	1		+		19291	15637	12086	12143	18520	18520					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.25396728515625	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.969	1	53.669	53.169	54.169	-0.29946								0	0	0	0.9619	1	20439	20439		0.094841	0.094841	1		+		19292	15637	12086	12143	18521	18521					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2539978027344	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.475	1	55.184	54.684	55.684	-0.2918								0	0	0	0.9619	1	21044	21044		0.094841	0.094841	1		+		19293	15637	12086	12143	18522	18522					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S4	4	388.25390625	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.65	1	40.272	39.772	40.772	-0.37828								0	0	0	0.9619	1	14921	14921		0.094841	0.094841	1		+		19294	15637	12086	12143	18523	18523					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S4	4	388.25390625	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.97	1	42.595	42.095	43.095	-0.37493								0	0	0	0.9619	1	15813	15813		0.094841	0.094841	1		+		19295	15637	12086	12143	18524	18524					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2539367675781	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.778	1	44.404	43.904	44.904	-0.37326								0	0	0	0.9619	1	16501	16501		0.094841	0.094841	1		+		19296	15637	12086	12143	18525	18525					0.16289778790564924
LLEPLLLPVGV	11	Unmodified	_LLEPLLLPVGV_					0	0	0			REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2540283203125	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.396	1	45.023	44.523	45.523	-0.37266								0	0	0	0.9619	1	16744	16744		0.094841	0.094841	1		+		19297	15637	12086	12143	18526	18526					0.16289778790564924
LLEPPAIPTP	10	Unmodified	_LLEPPAIPTP_					0	0	0			REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant	REV__PTPRT|p.P1075Rfs*6|6|0.15|ENSG00000196090|chr20:42110363-42110363|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	524.3081665039062	2	524.307875	1046.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.471	1	26.17	25.67	26.67	-0.30087								0	0	0	0.90892	1	9431	9431		13.906	1.3745	1		+		19298	14000	12087	12144	18527	18527					0.07976084279880524
LLERRRGPP	9	Unmodified	_LLERRRGPP_					0	0	0			REV__nc|ENSG00000140474|Q6PHR2-3|ULK3	REV__nc|ENSG00000140474|Q6PHR2-3|ULK3	MULTI-MSMS	HCT116MG_D190212_S2	2	548.3213500976562	2	547.333082	1092.65161	0.40245	0.00022028	1.0457	0.00057234	1.4481	0.00079262	547.3334953425383	21.994	0.26066	21.609	21.479	21.739	-0.38503					10	4	3	0	0	0	0.57626	1	7810	7810		12.532	3.9383	1	59567000	+		19299	12296	12088	12145	18528	18528					0.10899051448268438
LLESRPWRSRK	11	Unmodified	_LLESRPWRSRK_					0	0	0		ENST00000502875.1_1_4:141564423-141564600:-|nuORF	ENST00000502875.1_1_4:141564423-141564600:-|nuORF	ENST00000502875.1_1_4:141564423-141564600:-|nuORF	MSMS	HCT116MG_D190212_S2	2	714.4154052734375	2	714.415134	1426.81572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.07	1	27.74	27.24	28.24	-0.32987								0	0	0	0.94145	1	10224	10224		10.8	0	1				19300	8432	12089	12146	18529	18529					0.11938024148344084
LLEWVILVV	9	Unmodified	_LLEWVILVV_					0	0	0			REV__GPR137B|p.F299I|1|0.03|ENSG00000077585|chr1:236183835-236183835|T/A|missense_variant	REV__GPR137B|p.F299I|1|0.03|ENSG00000077585|chr1:236183835-236183835|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	542.3458862304688	2	542.344261	1082.67397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.319	1	58.148	57.648	58.648	-0.1703								0	0	0	0.76967	1	22536	22536		2.0598	0	1		+		19301	16854	12090	12147	18530	18530					0.1359383807332506
LLFAGRGR	8	Unmodified	_LLFAGRGR_					0	0	0			REV__ENST00000399537.8_1_7:5391457-5391520:-|nuORF	REV__ENST00000399537.8_1_7:5391457-5391520:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	445.2719421386719	2	445.271961	888.52937	-0.030526	-1.3592E-05	0.15971	7.1114E-05	0.12918	5.7522E-05	445.2719216930814	60.876	0.61578	60.876	60.698	61.314	0					17	11	2	0	0	0	0.87576	1	23488	23488		0.79363	0	1	33681000	+		19302	15387	12091	12148	18531	18531					0.08064634436709639
LLFDGYSYY	9	Unmodified	_LLFDGYSYY_					0	0	0			REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	HCT116MG_D190212_S3	3	571.3129272460938	2	570.76604	1139.51753	0.57614	0.00032884	-0.36124	-0.00020618	0.2149	0.00012266	570.7660687170471	45.694	0.25965	45.383	45.305	45.564	-0.31094					6	4	2	0	0	0	0.63193	1	17134	17134		9.3474	0	1	1709500	+		19303	11431	12092	12149	18532	18532					-0.046650718878026964
LLFDGYSYY	9	Unmodified	_LLFDGYSYY_					0	0	0			REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	570.76604	1139.51753	0.34183	0.00019511	-0.51761	-0.00029544	-0.17578	-0.00010033	570.7655661548506	45.553	0.20613	45.461	45.307	45.514	-0.092472	0.03902	-1.2161E-05	NaN	9.3474	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10047000	+		19304	11431	12092	12149							-0.046650718878026964
LLFDGYSYY	9	Unmodified	_LLFDGYSYY_					0	0	0			REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	570.76604	1139.51753	0.57614	0.00032884	-0.36124	-0.00020618	0.2149	0.00012266	570.7660687170471	45.694	0.25965	45.383	45.305	45.564	-0.31094	-0.03902	0.00016634	NaN	9.3474	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1709500	+		19305	11431	12092	12149							-0.046650718878026964
LLFDWSGTGRA	11	Unmodified	_LLFDWSGTGRA_					0	0	0		ENSG00000131019|ENST00000367339|ULBP3	ENSG00000131019|ENST00000367339|ULBP3	ENSG00000131019|ENST00000367339|ULBP3	MULTI-MSMS	HCT116MG_D190212_S2	2	611.814453125	2	611.814387	1221.61422	0.49916	0.00030539	0.6698	0.0004098	1.169	0.00071519	611.8143248330681	54.467	0.30638	54.278	54.048	54.354	-0.1894					7	5	2	0	0	0	0.4398	1	20996	20996		51.488	18.702	1	36832000			19306	3121	12093	12150	18533	18533					0.012279153919962482
LLFEGEKKITI	11	Unmodified	_LLFEGEKKITI_					0	0	0		ENSG00000005075|ENST00000292614|POLR2J;ENST00000326391.6_1_7:44054045-44058742:-|nuORF;ENST00000427076.5_1_7:44053248-44058742:-|nuORF;ENST00000422304.1_1_7:44027725-44058742:-|nuORF;ENST00000454572.1_1_7:44005962-44058742:-|nuORF	ENSG00000005075|ENST00000292614|POLR2J	ENSG00000005075|ENST00000292614|POLR2J	MSMS	HCT116MG_D190212_S2	2	645.8895874023438	2	645.887021	1289.75949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.852	1	46.741	46.241	47.241	-0.11121								0	0	0	0.60603	1	17857	17857		42.835	8.4335	1				19307	808	12094	12151	18534	18534					0.1261995846832633
LLFFVLLRMS	10	Unmodified	_LLFFVLLRMS_					0	0	0		PCDHB12|p.G22R|1|0.14|ENSG00000120328|chr5:141208971-141208971|G/A|missense_variant	PCDHB12|p.G22R|1|0.14|ENSG00000120328|chr5:141208971-141208971|G/A|missense_variant	PCDHB12|p.G22R|1|0.14|ENSG00000120328|chr5:141208971-141208971|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	619.8700561523438	2	619.87012	1237.72569	0.44504	0.00027587	0.099652	6.1772E-05	0.54469	0.00033764	620.3720494569881	54.379	0.87126	54.19	53.687	54.559	-0.1894					26	16	2	0	0	0	0.87945	1	20862	20862		3.5965	0.31518	1	15382000			19308	9734	12095	12152	18535	18535					0.11633258495589871
LLFKKKSRREK	11	Unmodified	_LLFKKKSRREK_					0	0	0			REV__ENST00000409544.5_1_2:71650128-71650188:+|nuORF	REV__ENST00000409544.5_1_2:71650128-71650188:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	717.3460693359375	2	716.959178	1431.9038	1.0635	0.00076252	-0.4683	-0.00033575	0.59524	0.00042676	716.9586616101325	45.219	0.25983	45.127	44.996	45.256	-0.092472					7	4	2	0	0	0	0.36565	1	17193	17193		3.2813	3.0123	1	21552000	+		19309	15438	12096	12153	18536	18536					0.20512644738960262
LLFKVRFTPIV	11	Unmodified	_LLFKVRFTPIV_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	HCT116MG_D190212_S1	1	444.9518737792969	3	444.951586	1331.83293	0.17131	7.6224E-05	1.3621	0.00060609	1.5335	0.00068231	444.951987801624	53.694	0.30866	53.694	53.565	53.873	0					14	5	3	0	0	0	0.74191	1	20595	20595		0.50596	0	1	63372000	+		19310	11153	12097	12154	18537	18537					0.18028551701468132
LLFLKKKKK	9	Unmodified	_LLFLKKKKK_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	HCT116MG_D190212_S3	3	573.4092407226562	2	573.410269	1144.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.751	1	13.826	13.326	14.326	0.074899								0	0	0	0.77025	1	4381	4381		0	0	1				19311	7251	12098	12155	18538	18538					0.239374878809258
LLFLKKKKK	9	Unmodified	_LLFLKKKKK_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	HCT116MG_D190212_S3	3	573.4085693359375	2	573.410269	1144.80599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.841	1	13.916	13.416	14.416	0.074899								0	0	0	0.77025	1	4416	4416		0	0	1				19312	7251	12098	12155	18539	18539					0.239374878809258
LLFLMFLI	8	Unmodified	_LLFLMFLI_					0	0	0		tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	505.3124694824219	2	505.311375	1008.6082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.076	1	58.076	57.576	58.576	0								0	0	0	0.77998	1	22361	22361		24.21	0	1				19313	18288	12099	12156	18540	18540					0.10423725626776559
LLFRKHQK	8	Unmodified	_LLFRKHQK_					0	0	0			REV__ENST00000416382.6_1_10:11374735-11374927:+|nuORF	REV__ENST00000416382.6_1_10:11374735-11374927:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	535.013427734375	2	535.335093	1068.65563	0.30017	0.00016069	0.66091	0.00035381	0.96108	0.0005145	535.335433645109	61.203	0.8796	61.203	60.952	61.832	0					26	16	2	0	0	0	0.32538	1	23753	23753		9.3474	0	1	8308900	+		19314	15477	12100	12157	18541	18541					0.12405140941996251
LLFRLWRRLWQ	11	Unmodified	_LLFRLWRRLWQ_					0	0	0			REV__ENST00000341418.9_1_15:68114320-68117168:+|nuORF	REV__ENST00000341418.9_1_15:68114320-68117168:+|nuORF	MSMS	HCT116MG_D190212_S1	1	793.9765014648438	2	793.975162	1585.93577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.552	1	38.552	38.052	39.052	0								0	0	0	0.96208	1	14437	14437		0	0	1		+		19315	14973	12101	12158	18542	18542					0.16624057212789012
LLFSWKRT	8	Unmodified	_LLFSWKRT_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	HCT116MG_D190212_S1	1	526.2749633789062	2	525.808377	1049.6022	0.21708	0.00011414	0.36646	0.00019269	0.58354	0.00030683	525.8083716751946	47.788	0.55828	47.788	47.696	48.254	0					13	10	2	0	0	0	0.32441	1	18306	18306		10.824	1.4765	1	7878300	+		19316	12219	12102	12159	18543	18543					0.07938343439468554
LLFTEKRFYIE	11	Unmodified	_LLFTEKRFYIE_					0	0	0			REV__NAA15|p.K687T|1|0.2|ENSG00000164134|chr4:139378759-139378759|A/C|missense_variant	REV__NAA15|p.K687T|1|0.2|ENSG00000164134|chr4:139378759-139378759|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	729.9027709960938	2	729.903202	1457.79185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.9	1	56.621	56.121	57.121	-0.27913								0	0	0	0.93552	1	21611	21611		13.906	7.1829	1		+		19317	17055	12103	12160	18544	18544					0.08126745871322782
LLFTKFRNYVY	11	Unmodified	_LLFTKFRNYVY_					0	0	0			REV__SBF2|p.S1506Y|1|0.38|ENSG00000133812|chr11:9795884-9795884|G/T|missense_variant	REV__SBF2|p.S1506Y|1|0.38|ENSG00000133812|chr11:9795884-9795884|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	733.0059814453125	2	732.405912	1462.79727	1.0559	0.00077334	3.5215	0.0025792	4.5774	0.0033525	732.4076150639833	42.421	0.25928	42.351	42.17	42.429	-0.069984					10	4	3	0	0	0	0.34807	1	16061	16061		22.736	10.496	1	36316000	+		19318	17494	12104	12161	18545	18545					0.08438469453813013
LLFYKYVYKRY	11	Unmodified	_LLFYKYVYKRY_					0	0	0		SLC8A1|p.G554Wfs*22|1|0.34|ENSG00000183023|chr2:40428621-40428622|-/A|frameshift_variant;ENSG00000118160|ENST00000236877|SLC8A2;nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	SLC8A1|p.G554Wfs*22|1|0.34|ENSG00000183023|chr2:40428621-40428622|-/A|frameshift_variant	SLC8A1|p.G554Wfs*22|1|0.34|ENSG00000183023|chr2:40428621-40428622|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	778.4349975585938	2	778.437212	1554.85987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.983	1	45.882	45.382	46.382	-0.1014								0	0	0	0.94284	1	17503	17503		10.074	0	1				19319	2599	12105	12162	18546	18546					0.1046361552196231
LLGAGAEY	8	Unmodified	_LLGAGAEY_					0	0	0		ENST00000487292.1_3_15:42134104-42135875:+|nuORF;ENST00000491746.5_1_15:42134104-42137535:+|nuORF	ENST00000487292.1_3_15:42134104-42135875:+|nuORF	ENST00000487292.1_3_15:42134104-42135875:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	793.4094848632812	1	793.409046	792.401769	0.85597	0.00067914	-0.058895	-4.6728E-05	0.79708	0.00063241	793.4088442357227	28.846	0.35769	28.53	28.352	28.709	-0.31613					9	6	2	0	0	0	0.06783	1	10542	10542		104.31	61.343	1	74735000			19320	8303	12106	12163	18547	18547					-0.002735509479975917
LLGAGAEY	8	Unmodified	_LLGAGAEY_					0	0	0		ENST00000487292.1_3_15:42134104-42135875:+|nuORF;ENST00000491746.5_1_15:42134104-42137535:+|nuORF	ENST00000487292.1_3_15:42134104-42135875:+|nuORF	ENST00000487292.1_3_15:42134104-42135875:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	793.4097900390625	1	793.409046	792.401769	0.8932	0.00070867	-0.038396	-3.0464E-05	0.8548	0.00067821	793.4088947288676	28.865	0.31241	28.643	28.473	28.786	-0.22196					9	5	2	0	0	0	0.11846	1	10475	10475		90.836	52.685	1	6381500			19321	8303	12106	12163	18548	18548					-0.002735509479975917
LLGDGHSY	8	Unmodified	_LLGDGHSY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	431.2088928222656	2	431.208692	860.402832	-0.12799	-5.519E-05	0.45673	0.00019694	0.32874	0.00014175	431.2088715119829	30.74	0.2076	30.473	30.353	30.56	-0.26704					6	3	2	0	0	0	0.25164	1	11332	11332		63.563	13.894	1	14648000			19322	4411	12107	12164	18549	18549					-0.0329533657909451
LLGDGHSY	8	Unmodified	_LLGDGHSY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	431.208692	860.402832	0.057362	2.4735E-05	-0.080106	-3.4542E-05	-0.022744	-9.8074E-06	431.2084924968882	30.839	0.15622	30.578	30.5	30.656	-0.26071	0.052741	-0.00042997	NaN	63.563	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3024200			19323	4411	12107	12164							-0.0329533657909451
LLGEEEELSI	10	Unmodified	_LLGEEEELSI_					0	0	0			REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|66|3|sense	REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|66|3|sense	MULTI-SECPEP	HCT116MG_D190212_S2	2	378.169189453125	3	377.864172	1130.57069	-0.32895	-0.0001243	1.1135	0.00042074	0.78452	0.00029644	377.864562932538	30.749	0.2076	30.482	30.353	30.56	-0.26704					5	3	2	0	0	0	0.30961	1	11343	11343		6.1918	3.6934	1	17738000	+		19324	16949	12108	12165	18550	18550					0.010622611041981145
LLGGAAHL	8	Unmodified	_LLGGAAHL_					0	0	0			REV__ENST00000361837.8_1_16:2510099-2510671:+|nuORF	REV__ENST00000361837.8_1_16:2510099-2510671:+|nuORF	MSMS	HCT116MG_D190212_S2	2	376.2263488769531	2	376.226688	750.438824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.048	1	37.955	37.455	38.455	-0.09301								0	0	0	0.8837	1	14282	14282		6.3541	0	1		+		19325	15100	12109	12166	18551	18551					0.0536216538843064
LLGLVIVFGP	10	Unmodified	_LLGLVIVFGP_					0	0	0		ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-3|TRIM13	ENSG00000204977|ENST00000378182|TRIM13	ENSG00000204977|ENST00000378182|TRIM13	MSMS	HCT116MG_D190212_S2	2	514.32958984375	2	514.331153	1026.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.905	1	32.693	32.193	33.193	-0.21135								0	0	0	0.93576	1	12191	12191		7.9102	2.1497	1				19326	6363	12110	12167	18552	18552					0.13549568901839848
LLGMEKKV	8	Unmodified	_LLGMEKKV_					0	0	0			REV__KIF18A|p.E516K|1|0.25|ENSG00000121621|chr11:28069303-28069303|C/T|missense_variant	REV__KIF18A|p.E516K|1|0.25|ENSG00000121621|chr11:28069303-28069303|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	459.27978515625	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.192	1	61.961	61.461	62.461	-0.23129								0	0	0	0.8837	1	23753	23753		0.79363	0	1		+		19327	16926	12111	12168	18553	18553					0.07996490064874706
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S1	1	476.321044921875	2	476.32112	950.627687	0.053547	2.5506E-05	-0.031927	-1.5207E-05	0.021621	1.0298E-05	476.3210030840749	51.272	0.41175	51.272	51.04	51.451	0					24	7	4	0	0	0	0.057285	1	19548	19548		71.134	13.662	1	652290000			19328	5125	12112	12169	18554	18554					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S1	1	951.634765625	1	951.634963	950.627687	0.68249	0.00064948	-0.23676	-0.00022531	0.44573	0.00042417	951.6342663996106	51.267	0.30884	51.267	51.091	51.4	0					11	5	3	0	0	0	0.0066639	1	19591	19591		123.1	52.381	1	31676000			19329	5125	12112	12169	18555	18555					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S2	2	476.3211364746094	2	476.32112	950.627687	0.2253	0.00010731	-0.092959	-4.4278E-05	0.13234	6.3036E-05	476.3210913547769	51.324	0.87495	51.145	50.914	51.789	-0.17868					52	16	5	0	0	0	0.057285	2	19657	19657;19936		71.134	13.662	1	2517500000			19330	5125	12112	12169	18556;18557	18556					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S2	2	951.63525390625	1	951.634963	950.627687	0.63813	0.00060727	-0.065287	-6.2129E-05	0.57285	0.00054514	951.6347600354328	51.324	0.46352	51.145	50.966	51.429	-0.17868					20	8	3	0	0	0	0.0066639	1	19673	19673		123.1	52.381	1	169240000			19331	5125	12112	12169	18558	18558					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S3	3	476.3211364746094	2	476.32112	950.627687	0.19468	9.2732E-05	0.11573	5.5126E-05	0.31042	0.00014786	476.3210503073505	51.667	0.47145	51.356	51.12	51.591	-0.31166					26	8	4	0	0	0	0.035914	1	19493	19493		81.613	24.142	1	92879000			19332	5125	12112	12169	18559	18559					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S4	4	476.32122802734375	2	476.32112	950.627687	0.49	0.0002334	-0.1706	-8.126E-05	0.3194	0.00015214	476.32083036731785	51.682	0.31195	51.332	51.15	51.462	-0.35028					12	5	3	0	0	0	0.23138	1	19264	19264		37.974	5.6685	1	10255000			19333	5125	12112	12169	18560	18560					0.15039817961894641
LLGSDLSVL	9	Unmodified	_LLGSDLSVL_					0	0	0			REV__ENSG00000178732|ENST00000692618|GP5	REV__ENSG00000178732|ENST00000692618|GP5	MSMS	HCT116MG_D190212_S3	3	458.77105712890625	2	458.771126	915.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.257	1	36.956	36.456	37.456	-0.30137								0	0	0	0.026974	1	13794	13794		85.357	3.7437	1		+		19334	13613	12113	12170	18561	18561					0.06655535837421667
LLGSLCAKL	9	Unmodified	_LLGSLCAKL_					0	0	0		SLCO1C1|p.T456Sfs*86|1|0.05|ENSG00000139155|chr12:20733087-20733088|-/TCCCCCCAGAG|frameshift_variant;nc|ENSG00000139155|Q9NYB5-4|SLCO1C1;nc|ENSG00000139155|Q9NYB5-2|SLCO1C1;ENSG00000139155|ENST00000266509|SLCO1C1;nc|ENSG00000139155|Q9NYB5-3|SLCO1C1	SLCO1C1|p.T456Sfs*86|1|0.05|ENSG00000139155|chr12:20733087-20733088|-/TCCCCCCAGAG|frameshift_variant	SLCO1C1|p.T456Sfs*86|1|0.05|ENSG00000139155|chr12:20733087-20733088|-/TCCCCCCAGAG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	459.27960205078125	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.876	1	39.496	38.996	39.996	-0.37936								0	0	0	0.76902	1	14619	14619		4.3292	0.38484	1				19335	3604	12114	12171	18562	18562					0.07996490064874706
LLGSLGWG	8	Unmodified	_LLGSLGWG_					0	0	0		ENST00000324015.7_1_17:1657834-1658029:+|nuORF	ENST00000324015.7_1_17:1657834-1658029:+|nuORF	ENST00000324015.7_1_17:1657834-1658029:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	401.7265319824219	2	401.726521	801.438489	-0.11723	-4.7093E-05	0.12193	4.8981E-05	0.0046988	1.8876E-06	401.72646204265953	23.137	0.26045	22.752	22.622	22.882	-0.3852					9	4	3	0	0	0	0.40466	1	8234	8234		49.669	0	1	33135000			19336	7123	12115	12172	18563	18563					0.029827456685779907
LLGSLSSINF	10	Unmodified	_LLGSLSSINF_					0	0	0			REV__UPK2|p.C80Afs*8|1|0.32|ENSG00000110375|chr11:118957236-118957236|G/-|frameshift_variant	REV__UPK2|p.C80Afs*8|1|0.32|ENSG00000110375|chr11:118957236-118957236|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	525.795654296875	2	525.795132	1049.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.688	1	49.524	49.024	50.024	-0.16369								0	0	0	0.87399	1	19024	19024		19.257	6.2145	1		+		19337	11397	12116	12173	18564	18564					0.052906097574805244
LLGYIGID	8	Unmodified	_LLGYIGID_					0	0	0		nc|ENSG00000100167|Q9UH03-3|SEPTIN3;nc|ENSG00000100167|Q9UH03-2|SEPTIN3;nc|ENSG00000100167|Q9UH03|SEPTIN3;ENSG00000100167|ENST00000644076|SEPTIN3	nc|ENSG00000100167|Q9UH03-3|SEPTIN3	nc|ENSG00000100167|Q9UH03-3|SEPTIN3	MSMS	HCT116MG_D190212_S2	2	431.9970397949219	2	432.247286	862.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.461	1	24.081	23.581	24.581	-0.38003								0	0	0	0.8837	1	8766	8766		10.183	0	1				19338	1671	12117	12174	18565	18565					0.04327881637232167
LLHEENFSV	9	Unmodified	_LLHEENFSV_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-MSMS	HCT116MG_D190212_S2	2	544.330078125	2	544.274564	1086.53457	0.63798	0.00034724	0.75851	0.00041284	1.3965	0.00076008	544.27488246729	41.508	0.30799	41.44	41.345	41.653	-0.068199					6	5	2	0	0	0	0.32978	1	15654	15654		27.629	4.8925	1	11023000			19339	1674	12118	12175	18566	18566					-0.005231512820046191
LLHGHIVEL	9	Unmodified	_LLHGHIVEL_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	HCT116MG_D190212_S1	1	515.8056640625	2	515.805834	1029.59712	0.1778	9.171E-05	0.036487	1.882E-05	0.21429	0.00011053	515.8057175878356	39.982	0.20769	39.982	39.865	40.073	0					5	3	2	0	0	0	0.1569	1	15049	15049		46.921	6.9635	1	7486600			19340	2674	12119	12176	18567	18567					0.08350039576839663
LLHGHIVEL	9	Unmodified	_LLHGHIVEL_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	HCT116MG_D190212_S2	2	515.8063354492188	2	515.805834	1029.59712	0.13615	7.0229E-05	0.93632	0.00048296	1.0725	0.00055319	515.806171202562	40.044	0.36285	39.971	39.739	40.102	-0.072838					8	6	2	0	0	0	0.1569	1	15118	15118		46.921	14.615	1	13551000			19341	2674	12119	12176	18568	18568					0.08350039576839663
LLHGLTVPQL	10	Unmodified	_LLHGLTVPQL_					0	0	0		ENST00000480709.1_1_2:219554611-219557045:+|nuORF;nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	ENST00000480709.1_1_2:219554611-219557045:+|nuORF	ENST00000480709.1_1_2:219554611-219557045:+|nuORF	MSMS	HCT116MG_D190212_S4	4	364.2251892089844	3	364.225486	1089.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.341	1	37.958	37.458	38.458	-0.38283								0	0	0	0.96263	1	14048	14048		1.9064	0	1				19342	4602	12120	12177	18569	18569					0.11338881782398857
LLHGNIVLLE	10	Unmodified	_LLHGNIVLLE_					0	0	0			REV__PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant	REV__PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	374.2284851074219	3	374.229008	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.896	1	24.521	24.021	25.021	-0.37521								0	0	0	0.92607	1	8942	8942		5.7834	0.88642	1		+		19343	12029	12121	12178	18570	18570					0.11014864436856442
LLHKRTAI	8	Unmodified	_LLHKRTAI_					0	0	0		TPCN1|p.L349Sfs*26|1|0.08|ENSG00000186815|chr12:113277020-113277020|G/-|frameshift_variant;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	TPCN1|p.L349Sfs*26|1|0.08|ENSG00000186815|chr12:113277020-113277020|G/-|frameshift_variant	TPCN1|p.L349Sfs*26|1|0.08|ENSG00000186815|chr12:113277020-113277020|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	476.3063049316406	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.781	1	53.592	53.092	54.092	-0.1894								0	0	0	0.8837	1	20690	20690		6.3541	0.59368	1				19344	5909	12122	12179	18571	18571					0.12525763159305825
LLHLCRLTIR	10	Unmodified	_LLHLCRLTIR_					0	0	0		ENSG00000154007|ENST00000284142|ASB17	ENSG00000154007|ENST00000284142|ASB17	ENSG00000154007|ENST00000284142|ASB17	MSMS	HCT116MG_D190212_S2	2	619.3817749023438	2	619.381717	1236.74888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.622	1	55.436	54.936	55.936	-0.18565								0	0	0	0.88261	1	21445	21445		18.146	7.3224	1				19345	4202	12123	12180	18572	18572					0.1399769733291123
LLHLVLRALP	10	Unmodified	_LLHLVLRALP_					0	0	0		ENST00000428545.6_1_12:6932898-6934818:+|nuORF	ENST00000428545.6_1_12:6932898-6934818:+|nuORF	ENST00000428545.6_1_12:6932898-6934818:+|nuORF	MSMS	HCT116MG_D190212_S1	1	382.2586669921875	3	382.257009	1143.7492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.155	1	57.155	56.655	57.655	0								0	0	0	0.96291	1	21988	21988		0.77653	0	1				19346	7832	12124	12181	18573	18573					0.18307440324406343
LLHPVRLRS	9	Unmodified	_LLHPVRLRS_					0	0	0			REV__ENST00000535789.1_1_11:63438917-63439196:-|nuORF	REV__ENST00000535789.1_1_11:63438917-63439196:-|nuORF	MSMS	HCT116MG_D190212_S3	3	364.2327575683594	3	364.232975	1089.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.096	1	58.832	58.332	59.332	-0.26405								0	0	0	0.77018	1	22496	22496		0.26902	0	1		+		19347	16340	12125	12182	18574	18574					0.13584525970691175
LLHQKLELP	9	Unmodified	_LLHQKLELP_					0	0	0		nc|ENSG00000080822|Q9NY35-3|CLDND1;ENSG00000080822|ENST00000341181|CLDND1	nc|ENSG00000080822|Q9NY35-3|CLDND1	nc|ENSG00000080822|Q9NY35-3|CLDND1	MSMS	HCT116MG_D190212_S4	4	364.225341796875	3	364.225486	1089.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.031	1	38.651	38.151	39.151	-0.38055								0	0	0	0.76991	1	14327	14327		1.1933	0	1				19348	1400	12126	12183	18575	18575					0.11338881782398857
LLHRKKRLRDL	11	Unmodified	_LLHRKKRLRDL_					0	0	0			REV__ENSG00000178605|ENST00000326153|GTPBP6	REV__ENSG00000178605|ENST00000326153|GTPBP6	MSMS	HCT116MG_D190212_S1	1	724.4701538085938	2	724.470244	1446.92593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.807	1	51.807	51.307	52.307	0								0	0	0	0.95954	1	19803	19803		1.3295	0	1		+		19349	13608	12127	12184	18576	18576					0.2203486920739124
LLHRRRRWRQR	11	Unmodified	_LLHRRRRWRQR_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MSMS	HCT116MG_D190212_S4	4	544.999267578125	3	545.00133	1631.98216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.97	1	55.658	55.158	56.158	-0.312								0	0	0	0.96208	1	20972	20972		0	0	1		+		19350	15178	12128	12185	18577	18577					0.19144934887413
LLHRRVFV	8	Unmodified	_LLHRRVFV_					0	0	0		ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	MSMS	HCT116MG_D190212_S2	2	520.3325805664062	2	520.329811	1038.64507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.752	1	59.592	59.092	60.092	-0.16012								0	0	0	0.8837	1	23111	23111		2.3027	0	1				19351	4032	12129	12186	18578	18578					0.12729158287538667
LLHVAIRIR	9	Unmodified	_LLHVAIRIR_					0	0	0		ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1;ENSG00000179832|ENST00000326134|MROH1	ENST00000536221.1_8:145474248-145485625:+|nuORF	ENST00000536221.1_8:145474248-145485625:+|nuORF	MSMS	HCT116MG_D190212_S3	3	364.2434387207031	3	364.245104	1089.71348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.51	1	50.197	49.697	50.697	-0.31381								0	0	0	0.76991	1	19049	19049		1.1933	0	1				19352	5568	12130	12187	18579	18579					0.17221402867403413
LLIDDEYKV	9	Unmodified	_LLIDDEYKV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;EMC1|p.F974Lfs*4|1|0.22|ENSG00000127463|chr1:19219363-19219363|A/-|frameshift_variant;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MSMS	HCT116MG_D190212_S2	2	554.2996826171875	2	554.300247	1106.58594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.704	1	45.602	45.102	46.102	-0.1014								0	0	0	0.16977	1	17388	17388		49.554	11.379	1				19353	774	12131	12188	18580	18580					0.036911726920379806
LLIDDKGTIKL	11	Unmodified	_LLIDDKGTIKL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	HCT116MG_D190212_S2	2	614.8794555664062	2	614.879196	1227.74384	0.54629	0.0003359	0.37329	0.00022953	0.91959	0.00056543	614.879057403193	47.226	0.25926	47.104	46.974	47.233	-0.12175					6	4	2	0	0	0	0.33345	1	18038	18038		60.943	13.349	1	20334000			19354	5121	12132	12189	18581	18581					0.13907671951278644
LLIDDKGTIKL	11	Unmodified	_LLIDDKGTIKL_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	614.879196	1227.74384	0.52857	0.00032501	0.033432	2.0557E-05	0.562	0.00034556	614.8790836310745	47.122	0.15549	47.122	47.01	47.165	0	0.0089772	-0.00018779	NaN	60.943	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3990000			19355	5121	12132	12189							0.13907671951278644
LLIDELNKL	9	Unmodified	_LLIDELNKL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-SECPEP	HCT116MG_D190212_S2	2	535.287841796875	2	535.826432	1069.63831	0.50005	0.00026794	-0.12014	-6.4376E-05	0.37991	0.00020356	535.8265771978946	55.539	0.25917	55.354	55.276	55.535	-0.18565					5	4	2	0	0	0	0.1389	1	21412	21412		53.833	11.738	1	10234000			19356	894	12133	12190	18582	18582					0.10627755825657914
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000388829.3_1_X:13397321-13397372:-|nuORF;GPX1|p.A122Gfs*?|1|0.15|ENSG00000233276|chr3:49357635-49357636|-/C|frameshift_variant;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	486.2924499511719	2	486.292225	970.569897	0.30278	0.00014724	0.022081	1.0738E-05	0.32486	0.00015798	486.2921783049978	55.734	0.25724	55.734	55.554	55.811	0					6	4	2	0	0	0	0.012496	1	21410	21410		107.19	27.591	1	209580000			19357	6514	12134	12191	18583	18583					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000388829.3_1_X:13397321-13397372:-|nuORF;GPX1|p.A122Gfs*?|1|0.15|ENSG00000233276|chr3:49357635-49357636|-/C|frameshift_variant;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	486.29229736328125	2	486.292225	970.569897	0.2659	0.00012931	0.15148	7.3664E-05	0.41738	0.00020297	486.292172338117	55.851	0.46355	55.665	55.431	55.895	-0.18565					21	8	4	0	0	0	0.0057285	1	21560	21560		131.27	35.157	1	547470000			19358	6514	12134	12191	18584	18584					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000388829.3_1_X:13397321-13397372:-|nuORF;GPX1|p.A122Gfs*?|1|0.15|ENSG00000233276|chr3:49357635-49357636|-/C|frameshift_variant;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000388829.3_1_X:13397321-13397372:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	486.292225	970.569897	0.098009	4.7661E-05	-1.1581	-0.00056317	-1.0601	-0.00051551	486.29141741064024	56.001	0.15923	55.689	55.558	55.718	-0.312	-0.0087572	-0.001185	NaN	131.27	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1284400			19359	6514	12134	12191							0.08343511245811897
LLIGLAVGD	9	Unmodified	_LLIGLAVGD_					0	0	0		TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1	TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant	TRPA1|p.L1023Ffs*15|1|0.42|ENSG00000104321|chr8:72023894-72023895|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	870.5316162109375	1	870.529495	869.522219	1.0544	0.00091791	0.55921	0.00048681	1.6136	0.0014047	870.5300589938752	60.334	2.5318	60.082	58.425	60.957	-0.25233					57	48	2	0	0	0	0.7005	1	23084	23084		5.2307	0	1	7436400			19360	1925	12135	12192	18585	18585					0.08223857045618388
LLIGPPGP	8	Unmodified	_LLIGPPGP_					0	0	0		COL27A1|p.M624I|1|0.25|ENSG00000196739|chr9:114169427-114169427|G/T|missense_variant	COL27A1|p.M624I|1|0.25|ENSG00000196739|chr9:114169427-114169427|G/T|missense_variant	COL27A1|p.M624I|1|0.25|ENSG00000196739|chr9:114169427-114169427|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	382.23883056640625	2	382.239264	762.463976	-0.092871	-3.5499E-05	-0.20918	-7.9958E-05	-0.30206	-0.00011546	382.2390762040101	36.832	0.25734	36.717	36.55	36.808	-0.11478					7	4	2	0	0	0	0.68942	1	13797	13797		24.21	0	1	32416000			19361	518	12136	12193	18586	18586					0.07324220190992037
LLIIRRPKKL	10	Unmodified	_LLIIRRPKKL_					0	0	0			REV__nc|ENSG00000142657|P52209-2|PGD	REV__nc|ENSG00000142657|P52209-2|PGD	MSMS	HCT116MG_D190212_S1	1	625.4441528320312	2	625.445175	1248.8758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.538	1	31.538	31.038	32.038	0								0	0	0	0.96937	1	11607	11607		0.40072	0.050084	1		+		19362	12364	12137	12194	18587	18587					0.261313665495436
LLIKAFFKI	9	Unmodified	_LLIKAFFKI_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MSMS	HCT116MG_D190212_S3	3	546.9064331054688	2	546.862621	1091.71069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.794	1	12.856	12.356	13.356	0.06246								0	0	0	0.7701	1	4016	4016		0.52476	0.52476	1		+		19363	14012	12138	12195	18588	18588					0.16850134689889273
LLIKGLIILF	10	Unmodified	_LLIKGLIILF_					0	0	0			REV__GPR160|p.I239Yfs*22|5|0.32|ENSG00000173890|chr3:170084681-170084681|A/-|frameshift_variant	REV__GPR160|p.I239Yfs*22|5|0.32|ENSG00000173890|chr3:170084681-170084681|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	571.8997802734375	2	571.899203	1141.78385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.939	1	45.628	45.128	46.128	-0.31094								0	0	0	0.95179	1	17215	17215		4.3292	0	1		+		19364	13461	12139	12196	18589	18589					0.21863263412524248
LLILKIVRLNV	11	Unmodified	_LLILKIVRLNV_					0	0	0			REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	MSMS	HCT116MG_D190212_S1	1	647.4537353515625	2	647.452665	1292.89078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.788	1	58.788	58.288	59.288	0								0	0	0	0.96149	1	22656	22656		0.30703	0	1		+		19365	12461	12140	12197	18590	18590					0.25604813626887335
LLILLLQVVHL	11	Unmodified	_LLILLLQVVHL_					0	0	0		ENST00000607058.1_1_8:24771141-24771990:-|nuORF	ENST00000607058.1_1_8:24771141-24771990:-|nuORF	ENST00000607058.1_1_8:24771141-24771990:-|nuORF	MSMS	HCT116MG_D190212_S1	1	637.43212890625	2	637.433941	1272.85333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.27	1	24.27	23.77	24.77	0								0	0	0	0.95954	1	8681	8681		1.3295	0.92882	1				19366	9116	12141	12198	18591	18591					0.22781722361264656
LLILLTPRTPT	11	Unmodified	_LLILLTPRTPT_					0	0	0			REV__ENSG00000171124|ENST00000303225|FUT3	REV__ENSG00000171124|ENST00000303225|FUT3	MSMS	HCT116MG_D190212_S4	4	413.26617431640625	3	413.267463	1236.78056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8455	1	1.5809	1.0809	2.0809	-0.26456								0	0	0	0.96121	1	570	570		0.45452	0.29519	1		+		19367	13333	12142	12199	18592	18592					0.17163968567842858
LLIRKPKWRLK	11	Unmodified	_LLIRKPKWRLK_					0	0	0		ENST00000579188.1_1_17:80358582-80358996:-|nuORF	ENST00000579188.1_1_17:80358582-80358996:-|nuORF	ENST00000579188.1_1_17:80358582-80358996:-|nuORF	MSMS	HCT116MG_D190212_S1	1	725.9912109375	2	725.990281	1449.96601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.682	1	34.682	34.182	35.182	0								0	0	0	0.96208	1	12876	12876		0	0	1				19368	8944	12143	12200	18593	18593					0.25902415877976637
LLKFRKLWQFL	11	Unmodified	_LLKFRKLWQFL_					0	0	0			REV__sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1	REV__sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	497.9783935546875	3	497.978135	1490.91258	0.43427	0.00021626	-0.31613	-0.00015743	0.11814	5.8831E-05	497.9782122705385	55.774	0.51643	55.589	55.327	55.844	-0.18565					19	9	3	0	0	0	0.74191	1	21527	21527		0.50596	0	1	28283000	+		19369	17558	12144	12201	18594	18594					0.18675618375459635
LLKFRKLWQFL	11	Unmodified	_LLKFRKLWQFL_					0	0	0			REV__sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1	REV__sp|P69334|US18_HCMVATransmembraneproteinUS18OS=Humancytomegalovirus(strainAD169)OX=10360GN=US18PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	746.9658813476562	2	746.463564	1490.91258	1.0511	0.00078458	0.066021	4.9282E-05	1.1171	0.00083386	746.4634491624165	55.769	0.41313	55.584	55.38	55.793	-0.18565					16	7	3	0	0	0	0.74191	1	21532	21532		0	0	1	21782000	+		19370	17558	12144	12201	18595	18595					0.18675618375459635
LLKGRQLLVLW	11	Unmodified	_LLKGRQLLVLW_					0	0	0		nc|ENSG00000168904|Q86X40-2|LRRC28	nc|ENSG00000168904|Q86X40-2|LRRC28	nc|ENSG00000168904|Q86X40-2|LRRC28	MSMS	HCT116MG_D190212_S3	3	670.4096069335938	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.397	1	46.084	45.584	46.584	-0.31237								0	0	0	0.95954	1	17395	17395		1.3295	0	1				19371	9541	12145	12202	18596	18596					0.19931356450024396
LLKHLRLS	8	Unmodified	_LLKHLRLS_					0	0	0		EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant;EFR3A|p.F760Lfs*4|1|0.26|ENSG00000132294|chr8:132002673-132002673|T/-|frameshift_variant;nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant	EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	490.32171630859375	2	490.324194	978.633835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.462	1	35.319	34.819	35.819	-0.14245								0	0	0	0.8837	1	13228	13228		2.0598	0	1				19372	760	12146	12203	18597	18597					0.1436633619340455
LLKHPTVLEK	10	Unmodified	_LLKHPTVLEK_					0	0	0		nc|ENSG00000003137|Q9NR63-2|CYP26B1;nc|ENSG00000003137|Q9NR63-3|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	MSMS	HCT116MG_D190212_S2	2	589.3697509765625	2	589.368798	1176.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.56	1	58.389	57.889	58.889	-0.1703								0	0	0	0.95648	1	22635	22635		3.2813	0	1				19373	793	12147	12204	18598	18598					0.14175126362283663
LLKIGKTD	8	Unmodified	_LLKIGKTD_					0	0	0			REV__ENST00000416281.6_1_11:67049840-67052918:+|nuORF	REV__ENST00000416281.6_1_11:67049840-67052918:+|nuORF	MSMS	HCT116MG_D190212_S4	4	444.2806396484375	2	444.28166	886.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.289	1	42.915	42.415	43.415	-0.37433								0	0	0	0.8837	1	15911	15911		0.69038	0	1		+		19374	11065	12148	12205	18599	18599					0.10095545936940198
LLKILVIILVL	11	Unmodified	_LLKILVIILVL_					0	0	0		ENSG00000167080|ENST00000393354|B4GALNT2;nc|ENSG00000167080|Q8NHY0|B4GALNT2	ENSG00000167080|ENST00000393354|B4GALNT2	ENSG00000167080|ENST00000393354|B4GALNT2	MSMS	HCT116MG_D190212_S2	2	625.4675903320312	2	625.46471	1248.91487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.388	1	29.087	28.587	29.587	-0.30095								0	0	0	0.96141	1	10763	10763		0.35063	0.35063	1				19375	4902	12149	12206	18600	18600					0.3003665406054097
LLKKFARNLV	10	Unmodified	_LLKKFARNLV_					0	0	0			REV__SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant	REV__SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	601.39208984375	2	601.392608	1200.77066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.149	1	43.149	42.649	43.649	0								0	0	0	0.95381	1	16293	16293		1.6526	0.17072	1		+		19376	10835	12150	12207	18601	18601					0.17830825353121327
LLKKGKTRK	9	Unmodified	_LLKKGKTRK_					0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-MSMS	HCT116MG_D190212_S2	2	536.3711547851562	2	536.371675	1070.7288	0.53221	0.00028546	-0.24348	-0.0001306	0.28873	0.00015486	536.3714365982703	60.513	1.3446	60.358	60.007	61.352	-0.15441					60	25	3	0	0	0	0.76814	1	23428	23428		0.52476	0	1	35830000	+		19377	17166	12151	12208	18602	18602					0.1962626966460448
LLKKKKKKK	9	Unmodified	_LLKKKKKKK_					0	0	0		ENST00000378289.8_1_10:14940166-14940367:-|nuORF;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S1	1	571.2433471679688	2	571.428993	1140.84343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.48	1	32.48	31.98	32.98	0								0	0	0	0.77025	1	11987	11987		0	0	1				19378	7541	12152	12209	18603	18603					0.27864579146535107
LLKKKKKKK	9	Unmodified	_LLKKKKKKK_					0	0	0		ENST00000378289.8_1_10:14940166-14940367:-|nuORF;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S1	1	571.4276123046875	2	571.428993	1140.84343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.731	1	39.731	39.231	40.231	0								0	0	0	0.77025	1	14913	14913		0	0	1				19379	7541	12152	12209	18604	18604					0.27864579146535107
LLKKKKKKK	9	Unmodified	_LLKKKKKKK_					0	0	0		ENST00000378289.8_1_10:14940166-14940367:-|nuORF;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S4	4	571.2444458007812	2	571.428993	1140.84343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.755	1	33.371	32.871	33.871	-0.38426								0	0	0	0.77025	1	12299	12299		0	0	1				19380	7541	12152	12209	18605	18605					0.27864579146535107
LLKKKKKKK	9	Unmodified	_LLKKKKKKK_					0	0	0		ENST00000378289.8_1_10:14940166-14940367:-|nuORF;AluJr_dup79343|chr19:41725353-41725661:-|1.3460544452102|0.0536068752531314|4.65|480.0|12|3|sense	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S4	4	571.4286499023438	2	571.428993	1140.84343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.777	1	54.453	53.953	54.953	-0.32349								0	0	0	0.7701	1	20491	20491		0.52476	0	1				19381	7541	12152	12209	18606	18606					0.27864579146535107
LLKKKKKLIV	10	Unmodified	_LLKKKKKLIV_					0	0	0			REV__ENSG00000198929|ENST00000361897|NOS1AP	REV__ENSG00000198929|ENST00000361897|NOS1AP	MSMS	HCT116MG_D190212_S2	2	605.951171875	2	605.952301	1209.89005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.069	1	47.936	47.436	48.436	-0.13281								0	0	0	0.97116	1	18353	18353		0	0	1		+		19382	14167	12153	12210	18607	18607					0.29350018977834225
LLKKKRKKWK	10	Unmodified	_LLKKKRKKWK_					0	0	0		ENST00000471830.1_1_20:3888626-3888701:+|nuORF	ENST00000471830.1_1_20:3888626-3888701:+|nuORF	ENST00000471830.1_1_20:3888626-3888701:+|nuORF	MSMS	HCT116MG_D190212_S2	2	678.4707641601562	2	678.471724	1354.92889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.571	1	62.441	61.941	62.941	-0.12924								0	0	0	0.97116	1	24254	24254		0	0	1				19383	8163	12154	12211	18608	18608					0.265627443322046
LLKKKRKKWK	10	Unmodified	_LLKKKRKKWK_					0	0	0		ENST00000471830.1_1_20:3888626-3888701:+|nuORF	ENST00000471830.1_1_20:3888626-3888701:+|nuORF	ENST00000471830.1_1_20:3888626-3888701:+|nuORF	MSMS	HCT116MG_D190212_S3	3	678.4710083007812	2	678.471724	1354.92889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.425	1	62.194	61.694	62.694	-0.23129								0	0	0	0.97116	1	23846	23846		0	0	1				19384	8163	12154	12211	18609	18609					0.265627443322046
LLKKKRKKWK	10	Unmodified	_LLKKKRKKWK_					0	0	0		ENST00000471830.1_1_20:3888626-3888701:+|nuORF	ENST00000471830.1_1_20:3888626-3888701:+|nuORF	ENST00000471830.1_1_20:3888626-3888701:+|nuORF	MSMS	HCT116MG_D190212_S4	4	678.470947265625	2	678.471724	1354.92889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.75	1	62.503	62.003	63.003	-0.24748								0	0	0	0.97116	1	23695	23695		0	0	1				19385	8163	12154	12211	18610	18610					0.265627443322046
LLKKKSSESTT	11	Unmodified	_LLKKKSSESTT_					0	0	0		ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	MULTI-MSMS	HCT116MG_D190212_S1	1	611.3570556640625	2	611.356085	1220.69762	0.30194	0.00018459	0.35009	0.00021403	0.65203	0.00039862	611.3561362300285	50.654	2.4259	50.654	49.75	52.176	0					132	46	4	0	0	0	0.74191	1	19658	19658		1.3295	1.3295	1	514610000			19386	5196	12155	12212	18611	18611					0.09609607049173974
LLKKKSSESTT	11	Unmodified	_LLKKKSSESTT_					0	0	0		ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	MULTI-MSMS	HCT116MG_D190212_S4	4	611.3569946289062	2	611.356085	1220.69762	0.8074	0.00049361	-0.30562	-0.00018684	0.50178	0.00030677	611.3556970317021	51.722	2.9579	51.372	50.01	52.967	-0.35028					115	56	3	0	0	0	0.74191	2	19414	19414;19695		1.3295	1.3295	1	26935000			19387	5196	12155	12212	18612;18613	18612					0.09609607049173974
LLKKLFKPI	9	Unmodified	_LLKKLFKPI_					0	0	0			REV__OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant	REV__OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	367.259033203125	3	367.258239	1098.75289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.921	1	57.647	57.147	58.147	-0.27434								0	0	0	0.77018	1	22023	22023		0.26902	0	1		+		19388	17377	12156	12213	18614	18614					0.20746110098275494
LLKKRLILLWI	11	Unmodified	_LLKKRLILLWI_					0	0	0		ENST00000358025.7_1_14:64483293-64484313:+|nuORF	ENST00000358025.7_1_14:64483293-64484313:+|nuORF	ENST00000358025.7_1_14:64483293-64484313:+|nuORF	MSMS	HCT116MG_D190212_S1	1	704.9923095703125	2	704.991958	1407.96936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.4	1	33.4	32.9	33.9	0								0	0	0	0.96208	1	12359	12359		0	0	1				19389	7318	12157	12214	18615	18615					0.2816966593197776
LLKLAFCLA	9	Unmodified	_LLKLAFCLA_					0	0	0		ENSG00000135211|ENST00000257663|TMEM60	ENSG00000135211|ENST00000257663|TMEM60	ENSG00000135211|ENST00000257663|TMEM60	MULTI-MSMS	HCT116MG_D190212_S2	2	496.28302001953125	2	496.304081	990.59361	0.3896	0.00019336	-0.18151	-9.0086E-05	0.20808	0.00010327	496.3039085083582	45.277	2.275	45.184	44.421	46.696	-0.092476					90	43	3	0	0	0	0.39063	1	17189	17189		23.148	8.5667	1	74352000			19390	3332	12158	12215	18616	18616					0.09793653478629949
LLKLFLCK	8	Unmodified	_LLKLFLCK_					0	0	0		RNASEL|p.S113C|1|0.21|ENSG00000135828|chr1:182586469-182586469|G/C|missense_variant	RNASEL|p.S113C|1|0.21|ENSG00000135828|chr1:182586469-182586469|G/C|missense_variant	RNASEL|p.S113C|1|0.21|ENSG00000135828|chr1:182586469-182586469|G/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	489.240234375	2	489.314449	976.614345	0.10025	4.9054E-05	-0.45469	-0.00022249	-0.35444	-0.00017343	489.314238857956	50.756	1.1855	50.756	50.266	51.451	0					62	22	6	0	0	0	0.86388	1	19304	19304		2.8892	0	1	4062899999.9999995			19391	18114	12159	12216	18617	18617					0.1251024385827577
LLKLKFKKL	9	Unmodified	_LLKLKFKKL_					0	0	0			REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD	REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MSMS	HCT116MG_D190212_S1	1	565.9024047851562	2	565.90482	1129.79509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.868	1	30.868	30.368	31.368	0								0	0	0	0.77008	1	11337	11337		0.6015	0	1		+		19392	11193	12160	12217	18618	18618					0.2353808550665235
LLKLVAAAPPA	11	Unmodified	_LLKLVAAAPPA_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MSMS	HCT116MG_D190212_S1	1	355.232421875	3	355.233982	1062.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.553	1	36.553	36.053	37.053	0								0	0	0	0.96111	1	13629	13629		0.50596	0.23694	1				19393	5803	12161	12218	18619	18619					0.1512835630483096
LLKLYLRELP	10	Unmodified	_LLKLYLRELP_					0	0	0		nc|ENSG00000138639|Q8N264-4|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24;ARHGAP22|p.F312Lfs*10|1|0.3|ENSG00000128805|chr10:48453356-48453356|A/-|frameshift_variant;nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22;nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ARHGAP22|p.S682Rfs*3|4|0.4|ENSG00000128805|chr10:48446444-48446444|A/-|frameshift_variant;ENSG00000128805|ENST00000249601|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-5|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-2|ARHGAP22	nc|ENSG00000138639|Q8N264-4|ARHGAP24	nc|ENSG00000138639|Q8N264-4|ARHGAP24	MSMS	HCT116MG_D190212_S4	4	629.4019775390625	2	629.400099	1256.78564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.278	1	43.904	43.404	44.404	-0.37373								0	0	0	0.96377	1	16307	16307		1.6526	0.17072	1				19394	3573	12162	12219	18620	18620					0.16752272430471749
LLKMVFRHRRF	11	Unmodified	_LLKMVFRHRRF_					0	0	0		sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3;sp|F5H8S6|US24_HCMVMTegumentproteinUS24OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US24PE=3SV=1	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	MULTI-MSMS	HCT116MG_D190212_S1	1	501.6342468261719	3	501.634485	1501.88163	0.48601	0.0002438	-0.12274	-6.1573E-05	0.36327	0.00018223	501.6343759695356	54.26	5.1376	54.26	51.704	56.841	0					249	99	6	0	0	0	0.74191	2	20636	20636;20865		0.45452	0.35968	1	998670000			19395	18188	12163	12220	18621;18622	18621					0.15076141789540998
LLKMVFRHRRF	11	Unmodified	_LLKMVFRHRRF_					0	0	0		sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3;sp|F5H8S6|US24_HCMVMTegumentproteinUS24OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US24PE=3SV=1	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	MULTI-SECPEP	HCT116MG_D190212_S2	2	752.450439453125	2	751.94809	1501.88163	0.98348	0.00073953	-0.12296	-9.2461E-05	0.86052	0.00064707	751.9478377477196	54.973	2.7706	54.785	53.173	55.944	-0.18797					122	53	5	0	0	0	0.36627	1	20877	20877		0.35063	0	1	256330000			19396	18188	12163	12220	18623	18623					0.15076141789540998
LLKMVFRHRRF	11	Unmodified	_LLKMVFRHRRF_					0	0	0		sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3;sp|F5H8S6|US24_HCMVMTegumentproteinUS24OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US24PE=3SV=1	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	MULTI-MSMS	HCT116MG_D190212_S3	3	751.9480590820312	2	751.94809	1501.88163	0.51661	0.00038846	0.15639	0.0001176	0.673	0.00050606	751.9482470600304	55.132	0.62738	54.84	54.456	55.083	-0.29181					16	11	2	0	0	0	0.74191	1	20904	20904		0	0	1	3065400			19397	18188	12163	12220	18624	18624					0.15076141789540998
LLKMVFRHRRF	11	Unmodified	_LLKMVFRHRRF_					0	0	0		sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3;sp|F5H8S6|US24_HCMVMTegumentproteinUS24OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US24PE=3SV=1	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	MULTI-MSMS	HCT116MG_D190212_S4	4	501.6343688964844	3	501.634485	1501.88163	0.43536	0.00021839	-0.43427	-0.00021784	0.0010952	5.4941E-07	501.9686676448374	54.307	0.67736	53.984	53.619	54.296	-0.32348					21	12	2	0	0	0	0.74191	1	20340	20340		0.45452	0.35968	1	4706700			19398	18188	12163	12220	18625	18625					0.15076141789540998
LLKRLKKKRKQ	11	Unmodified	_LLKRLKKKRKQ_					0	0	0			REV__ARFGEF2-SULF2|2|fusion	REV__ARFGEF2-SULF2|2|fusion	MSMS	HCT116MG_D190212_S1	1	719.7267456054688	2	720.006462	1437.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.272	1	29.272	28.772	29.772	0								0	0	0	0.95954	1	10692	10692		1.3295	1.0225	1		+		19399	9972	12164	12221	18626	18626					0.29689203280941
LLKRLLGPKL	10	Unmodified	_LLKRLLGPKL_					0	0	0		nc|ENSG00000156222|O00337-2|SLC28A1;SLC28A1|p.Y329Tfs*5|1|0.16|ENSG00000156222|chr15:84924009-84924009|C/-|frameshift_variant;SLC28A1|p.A356Gfs*35|1|0.07|ENSG00000156222|chr15:84924094-84924107|CCTACATCTCCTTT/-|frameshift_variant;ENSG00000156222|ENST00000394573|SLC28A1	nc|ENSG00000156222|O00337-2|SLC28A1	nc|ENSG00000156222|O00337-2|SLC28A1	MSMS	HCT116MG_D190212_S2	2	384.2744140625	3	384.27266	1149.79615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.55	1	43.477	42.977	43.977	-0.073376								0	0	0	0.96769	1	16516	16516		0.77653	0	1				19400	4278	12165	12222	18627	18627					0.22724299875562792
LLKRVRLTIR	10	Unmodified	_LLKRVRLTIR_					0	0	0			REV__USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant	REV__USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	634.4375610351562	2	634.437881	1266.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.273	1	58.102	57.602	58.602	-0.1703								0	0	0	0.96911	1	22517	22517		0.45834	0	1		+		19401	12876	12166	12223	18628	18628					0.23845294401394312
LLKVLLLPLAP	11	Unmodified	_LLKVLLLPLAP_					0	0	0		ENST00000538524.1_1_12:6755846-6756568:-|nuORF;ENSG00000111644|ENST00000229243|ACRBP	ENST00000538524.1_1_12:6755846-6756568:-|nuORF	ENST00000538524.1_1_12:6755846-6756568:-|nuORF	MSMS	HCT116MG_D190212_S4	4	397.27874755859375	3	397.280932	1188.82097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.314	1	54.997	54.497	55.497	-0.31774								0	0	0	0.9619	1	20708	20708		0.094841	0.094841	1				19402	2302	12167	12224	18629	18629					0.23410934958292273
LLLAAAPVVP	10	Unmodified	_LLLAAAPVVP_					0	0	0		nc|ENSG00000188199|A6NNL0-2|NUTM2B;nc|ENSG00000184923|Q8IVF1-2|NUTM2A;ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A	nc|ENSG00000188199|A6NNL0-2|NUTM2B	nc|ENSG00000188199|A6NNL0-2|NUTM2B	MSMS	HCT116MG_D190212_S3	3	482.3144226074219	2	482.315503	962.616454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.732	1	47.416	46.916	47.916	-0.31525								0	0	0	0.91507	1	17933	17933		12.532	4.6214	1				19403	5790	12168	12225	18630	18630					0.133649958677438
LLLAAPAQA	9	Unmodified	_LLLAAPAQA_					0	0	0		GM2A|p.L13M|1|0.22|ENSG00000196743|chr5:151253253-151253253|C/A|missense_variant;ENSG00000196743|ENST00000357164|GM2A	GM2A|p.L13M|1|0.22|ENSG00000196743|chr5:151253253-151253253|C/A|missense_variant	GM2A|p.L13M|1|0.22|ENSG00000196743|chr5:151253253-151253253|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	868.1930541992188	1	867.52983	866.522553	0.60336	0.00052343	0.066756	5.7913E-05	0.67011	0.00058134	867.5297725577964	44.368	0.32258	44.368	44.141	44.464	0					7	5	2	0	0	0	0.0066639	1	16797	16797		123.1	29.213	1	6578400			19404	6100	12169	12226	18631	18631					0.08395276765452309
LLLAAPAQA	9	Unmodified	_LLLAAPAQA_					0	0	0		GM2A|p.L13M|1|0.22|ENSG00000196743|chr5:151253253-151253253|C/A|missense_variant;ENSG00000196743|ENST00000357164|GM2A	GM2A|p.L13M|1|0.22|ENSG00000196743|chr5:151253253-151253253|C/A|missense_variant	GM2A|p.L13M|1|0.22|ENSG00000196743|chr5:151253253-151253253|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	867.5313110351562	1	867.52983	866.522553	0.9131	0.00079214	0.020518	1.78E-05	0.93362	0.00080994	867.5300023536751	44.487	0.31479	44.402	44.22	44.535	-0.084797					8	5	2	0	0	0	0.0066639	1	16907	16907		123.1	29.213	1	38640000			19405	6100	12169	12226	18632	18632					0.08395276765452309
LLLCIPFIS	9	Unmodified	_LLLCIPFIS_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	HCT116MG_D190212_S2	2	509.803955078125	2	509.803914	1017.59328	0.50318	0.00025652	0.15237	7.7678E-05	0.65555	0.0003342	509.8037437814938	46.656	2.2652	46.545	45.648	47.913	-0.11122					129	43	5	0	0	0	0.65706	1	18257	18257		7.9102	7.9102	1	83331000			19406	5847	12170	12227	18633	18633					0.08518233758763927
LLLDPHAM	8	Unmodified	_LLLDPHAM_					0	0	0			REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant	REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	455.247802734375	2	455.246763	908.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.527	1	36.527	36.027	37.027	0								0	0	0	0.8837	1	13619	13619		6.3541	0	1		+		19407	12423	12171	12228	18634	18634					0.021073439966812657
LLLDPHAM	8	Unmodified	_LLLDPHAM_					0	0	0			REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant	REV__OSBPL10|p.G633Ffs*24|1|0.45|ENSG00000144645|chr3:31670814-31670815|-/TAGAAAG|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	455.2485656738281	2	455.246763	908.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.876	1	44.876	44.376	45.376	0								0	0	0	0.8837	1	16988	16988		2.8892	0.31174	1		+		19408	12423	12171	12228	18635	18635					0.021073439966812657
LLLDVPTA	8	Unmodified	_LLLDVPTA_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	HCT116MG_D190212_S2	2	841.5035400390625	1	841.502946	840.49567	0.65022	0.00054716	-0.31268	-0.00026312	0.33754	0.00028404	841.5029960460823	53.024	0.36275	52.835	52.655	53.018	-0.18922					10	6	2	0	0	0	0.10511	1	20384	20384		93.883	37.342	1	19168000			19409	6457	12172	12229	18636	18636					0.06904168154289891
LLLDVPTAA	9	Unmodified	_LLLDVPTAA_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	HCT116MG_D190212_S2	2	912.541259765625	1	912.54006	911.532783	0.77621	0.00070832	-0.46796	-0.00042703	0.30825	0.00028129	912.5398322365096	52.612	0.25956	52.425	52.295	52.555	-0.18725					7	4	2	0	0	0	0.14972	1	20255	20255		48.346	8.3885	1	6948600			19410	6457	12173	12230	18637	18637					0.07347839700048553
LLLDVPTAAV	10	Unmodified	_LLLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	HCT116MG_D190212_S1	1	1011.60888671875	1	1011.60847	1010.6012	0.92756	0.00093833	-0.45087	-0.00045611	0.47669	0.00048222	1011.6078506534428	55.528	0.25736	55.528	55.4	55.658	0					9	4	3	0	0	0	0.026842	1	21348	21348		108	61.976	1	66204000			19411	6457	12174	12231	18638	18638					0.09632084279905939
LLLDVPTAAV	10	Unmodified	_LLLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	HCT116MG_D190212_S2	2	1011.6087646484375	1	1011.60847	1010.6012	0.71084	0.00071909	0.060447	6.1149E-05	0.77129	0.00078024	1011.6083483993249	55.746	0.25945	55.561	55.431	55.691	-0.18565					10	4	3	0	0	0	0.029196	1	21498	21498		103.75	51.48	1	264260000			19412	6457	12174	12231	18639	18639					0.09632084279905939
LLLDVPTAAV	10	Unmodified	_LLLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	HCT116MG_D190212_S2	2	506.30780029296875	2	506.307875	1010.6012	0.48244	0.00024426	-0.26842	-0.0001359	0.21402	0.00010836	506.3076424338648	55.746	0.25945	55.561	55.431	55.691	-0.18565					7	4	2	0	0	0	0.4604	1	21525	21525		37.974	21.032	1	19845000			19413	6457	12174	12231	18640	18640					0.09632084279905939
LLLEPYNKY	9	Unmodified	_LLLEPYNKY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;MYH9|p.I784*|1|0.07|ENSG00000100345|chr22:36304036-36304036|G/-|frameshift_variant;MYH9|p.R301H|1|0.36|ENSG00000100345|chr22:36320330-36320330|C/T|missense_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	HCT116MG_D190212_S2	2	576.81884765625	2	576.818607	1151.62266	0.47007	0.00027114	0.26946	0.00015543	0.73953	0.00042657	576.8186474016883	45.167	0.52088	45.075	44.787	45.307	-0.092472					20	9	3	0	0	0	0.012531	1	17172	17172		131.27	59.345	1	121330000			19414	1691	12175	12232	18641	18641					0.05291469308622254
LLLFFKEY	8	Unmodified	_LLLFFKEY_					0	0	0			REV__ENSG00000198121|ENST00000683809|LPAR1	REV__ENSG00000198121|ENST00000683809|LPAR1	MULTI-SECPEP	HCT116MG_D190212_S2	2	537.2673950195312	2	536.807511	1071.60047	0.70745	0.00037977	1.0787	0.00057903	1.7861	0.0009588	536.8079141974918	33.633	0.25988	33.44	33.327	33.587	-0.19297					6	4	2	0	0	0	0.30262	1	12527	12527		8.5933	2.2392	1	7526700	+		19415	14109	12176	12233	18642	18642					0.06753289630864856
LLLFGRRRRRH	11	Unmodified	_LLLFGRRRRRH_					0	0	0		ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MSMS	HCT116MG_D190212_S4	4	740.4638671875	2	740.465827	1478.9171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.445	1	55.129	54.629	55.629	-0.31586								0	0	0	0.96141	1	20760	20760		0.35063	0	1				19416	9040	12177	12234	18643	18643					0.1967994036156142
LLLFMSVPV	9	Unmodified	_LLLFMSVPV_					0	0	0		ENST00000466307.1_1_7:134832973-134837580:+|nuORF;ENST00000275767.3_1_7:134832829-134849312:+|nuORF	ENST00000466307.1_1_7:134832973-134837580:+|nuORF	ENST00000466307.1_1_7:134832973-134837580:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.2768859863281	2	509.803914	1017.59328	0.50428	0.00025708	-0.15493	-7.8982E-05	0.34935	0.0001781	509.8036636860465	44.957	0.83593	44.865	44.369	45.205	-0.092472					25	15	2	0	0	0	0.25445	1	16939	16939		2.0598	0	1	17767000			19417	6930	12178	12235	18644	18644					0.08518233758786664
LLLFRCLHFVN	11	Unmodified	_LLLFRCLHFVN_					0	0	0		ENSG00000182405|ENST00000397766|PGBD4	ENSG00000182405|ENST00000397766|PGBD4	ENSG00000182405|ENST00000397766|PGBD4	MULTI-MSMS	HCT116MG_D190212_S4	4	687.889892578125	2	687.889375	1373.7642	0.74213	0.0005105	0.61408	0.00042242	1.3562	0.00093292	687.8898107276577	40.145	0.29765	39.766	39.643	39.941	-0.37936					10	7	2	0	0	0	0.73364	1	14706	14706		9.3831	4.4861	1	6707400			19418	5670	12179	12236	18645	18645					0.09226564130085535
LLLFRCLHFVN	11	Unmodified	_LLLFRCLHFVN_					0	0	0		ENSG00000182405|ENST00000397766|PGBD4	ENSG00000182405|ENST00000397766|PGBD4	ENSG00000182405|ENST00000397766|PGBD4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	687.889375	1373.7642	0.55041	0.00037862	0.67577	0.00046485	1.2262	0.00084347	687.8897542491496	39.735	0.36416	39.735	39.553	39.917	0	-0.00061485	1.4434E-05	NaN	9.3831	18	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57314000			19419	5670	12179	12236							0.09226564130085535
LLLIVGRQR	9	Unmodified	_LLLIVGRQR_					0	0	0		PDPR|p.S8L|1|0.09|ENSG00000090857|chr16:70120515-70120515|C/T|missense_variant	PDPR|p.S8L|1|0.09|ENSG00000090857|chr16:70120515-70120515|C/T|missense_variant	PDPR|p.S8L|1|0.09|ENSG00000090857|chr16:70120515-70120515|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.3558959960938	2	534.356025	1066.6975	0.52394	0.00027997	0.029682	1.5861E-05	0.55362	0.00029583	534.3558887570468	60.274	1.6023	60.12	59.801	61.404	-0.15441					62	30	3	0	0	0	0.74917	1	23254	23254		1.8442	1.3195	1	64986000			19420	9739	12180	12237	18646	18646					0.16681696630507759
LLLLCLWG	8	Unmodified	_LLLLCLWG_					0	0	0			REV__ENST00000494410.5_1_10:90770523-90773122:+|nuORF	REV__ENST00000494410.5_1_10:90770523-90773122:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	465.77801513671875	2	465.777699	929.540846	-0.048696	-2.2681E-05	0.18286	8.5172E-05	0.13416	6.2491E-05	465.7776630313255	44.397	1.2723	44.023	43.077	44.349	-0.37373					47	27	3	0	0	0	0.87576	1	16314	16314		0.79363	0	1	11288000	+		19421	10563	12181	12238	18647	18647					0.07325695415818245
LLLLCLWG	8	Unmodified	_LLLLCLWG_					0	0	0			REV__ENST00000494410.5_1_10:90770523-90773122:+|nuORF	REV__ENST00000494410.5_1_10:90770523-90773122:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	465.7776184082031	2	465.777699	929.540846	-0.014765	-6.8774E-06	0.074656	3.4773E-05	0.05989	2.7896E-05	465.777624144864	44.962	1.2662	44.589	44.335	45.601	-0.37326					73	37	2	0	0	0	0.87576	1	16516	16516		0.79363	0	1	18889000	+		19422	10563	12181	12238	18648	18648					0.07325695415818245
LLLLIFWIVPA	11	Unmodified	_LLLLIFWIVPA_					0	0	0		NIPA1|p.A180V|1|0.12|ENSG00000170113|chr15:22823788-22823788|C/T|missense_variant	NIPA1|p.A180V|1|0.12|ENSG00000170113|chr15:22823788-22823788|C/T|missense_variant	NIPA1|p.A180V|1|0.12|ENSG00000170113|chr15:22823788-22823788|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	649.417724609375	2	649.41776	1296.82097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.083	1	37.782	37.282	38.282	-0.30137								0	0	0	0.95925	1	14095	14095		1.4819	0	1				19423	9695	12182	12239	18649	18649					0.18442934958261503
LLLLKKKKK	9	Unmodified	_LLLLKKKKK_					0	0	0			REV__ENSG00000198929|ENST00000361897|NOS1AP	REV__ENSG00000198929|ENST00000361897|NOS1AP	MSMS	HCT116MG_D190212_S3	3	556.441162109375	2	556.418094	1110.82164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.991	1	41.689	41.189	42.189	-0.30257								0	0	0	0.77025	1	15629	15629		0	0	1		+		19424	14167	12183	12240	18650	18650					0.27065774397988207
LLLLLCALAP	10	Unmodified	_LLLLLCALAP_					0	0	0		ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ADAMTS7|p.L864Wfs*93|2|0.38|ENSG00000136378|chr15:78768188-78768188|G/-|frameshift_variant;ENSG00000136378|ENST00000388820|ADAMTS7	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	MSMS	HCT116MG_D190212_S3	3	520.3330688476562	2	520.332839	1038.65112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.858	1	35.558	35.058	36.058	-0.30042								0	0	0	0.93576	1	13229	13229		7.9102	0	1				19425	49	12184	12241	18651	18651					0.13334495684193826
LLLLLCALAP	10	Unmodified	_LLLLLCALAP_					0	0	0		ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ADAMTS7|p.L864Wfs*93|2|0.38|ENSG00000136378|chr15:78768188-78768188|G/-|frameshift_variant;ENSG00000136378|ENST00000388820|ADAMTS7	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	MSMS	HCT116MG_D190212_S3	3	520.3328857421875	2	520.332839	1038.65112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.842	1	48.526	48.026	49.026	-0.31596								0	0	0	0.96291	1	18380	18380		1.8442	0	1				19426	49	12184	12241	18652	18652					0.13334495684193826
LLLLLCALAP	10	Unmodified	_LLLLLCALAP_					0	0	0		ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ADAMTS7|p.L864Wfs*93|2|0.38|ENSG00000136378|chr15:78768188-78768188|G/-|frameshift_variant;ENSG00000136378|ENST00000388820|ADAMTS7	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	ENST00000566303.5_1_15:79059386-79103601:-|nuORF	MSMS	HCT116MG_D190212_S4	4	520.3330078125	2	520.332839	1038.65112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.936	1	35.55	35.05	36.05	-0.38601								0	0	0	0.95179	1	13131	13131		4.3292	0	1				19427	49	12184	12241	18653	18653					0.13334495684193826
LLLLLILIHI	10	Unmodified	_LLLLLILIHI_					0	0	0			REV__ENSG00000224420|ENST00000420022|ADM5	REV__ENSG00000224420|ENST00000420022|ADM5	MSMS	HCT116MG_D190212_S1	1	391.94879150390625	3	391.949294	1172.82605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.808	1	10.808	10.308	11.308	0								0	0	0	0.97116	1	3346	3346		0	0	1		+		19428	14304	12185	12242	18654	18654					0.24655238820901104
LLLLLLKLV	9	Unmodified	_LLLLLLKLV_					0	0	0			REV__ENSG00000108829|ENST00000225972|LRRC59	REV__ENSG00000108829|ENST00000225972|LRRC59	MSMS	HCT116MG_D190212_S4	4	519.138916015625	2	519.388471	1036.76239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.247	1	12.078	11.578	12.578	-0.16903								0	0	0	0.77025	1	3793	3793		0	0	1		+		19429	11356	12186	12243	18655	18655					0.24547878383782518
LLLLLLLLLLK	11	Unmodified	_LLLLLLLLLLK_					0	0	0			REV__nc|ENSG00000115155|Q9HC10-4|OTOF	REV__nc|ENSG00000115155|Q9HC10-4|OTOF	MSMS	HCT116MG_D190212_S1	1	639.4791259765625	2	639.48036	1276.94617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.25	1	46.25	45.75	46.75	0								0	0	0	0.96208	1	17543	17543		0	0	1		+		19430	11529	12187	12244	18656	18656					0.3187722709465106
LLLLLLLLLY	10	Unmodified	_LLLLLLLLLY_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MSMS	HCT116MG_D190212_S3	3	600.423095703125	2	600.422511	1198.83047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.682	1	39.381	38.881	39.881	-0.30137								0	0	0	0.96911	1	14734	14734		0.45834	0.45834	1				19431	5676	12188	12245	18657	18657					0.2390070324381668
LLLLLLLLM	9	Unmodified	_LLLLLLLLM_					0	0	0			REV__ENSG00000283654|ENST00000637218|CIROP	REV__ENSG00000283654|ENST00000637218|CIROP	MSMS	HCT116MG_D190212_S2	2	352.2326354980469	3	352.248464	1053.72356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.943	1	61.807	61.307	62.307	-0.13585								0	0	0	0.77025	1	24001	24001		0	0	1		+		19432	14478	12189	12246	18658	18658					0.1988482975775696
LLLLLLLQKIP	11	Unmodified	_LLLLLLLQKIP_					0	0	0		ENST00000373874.6_1_20:35220081-35220303:+|nuORF	ENST00000373874.6_1_20:35220081-35220303:+|nuORF	ENST00000373874.6_1_20:35220081-35220303:+|nuORF	MSMS	HCT116MG_D190212_S2	2	639.3914794921875	2	638.951967	1275.88938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.013	1	47.881	47.381	48.381	-0.13281								0	0	0	0.96149	1	18330	18330		0.30703	0.30703	1				19433	7483	12190	12247	18659	18659					0.26247179538108867
LLLLLLLRLLL	11	Unmodified	_LLLLLLLRLLL_					0	0	0		ENST00000498707.5_1_3:64673464-64673620:-|nuORF	ENST00000498707.5_1_3:64673464-64673620:-|nuORF	ENST00000498707.5_1_3:64673464-64673620:-|nuORF	MSMS	HCT116MG_D190212_S3	3	653.4834594726562	2	653.483434	1304.95232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.808	1	12.871	12.371	13.371	0.06246								0	0	0	0.96208	1	4022	4022		0	0	1				19434	8414	12191	12248	18660	18660					0.3120374532616097
LLLLLPLLLKV	11	Unmodified	_LLLLLPLLLKV_					0	0	0		ENST00000374369.7_1_20:34025707-34025902:-|nuORF	ENST00000374369.7_1_20:34025707-34025902:-|nuORF	ENST00000374369.7_1_20:34025707-34025902:-|nuORF	MSMS	HCT116MG_D190212_S2	2	624.4547119140625	2	624.456885	1246.89922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.758	1	39.683	39.183	40.183	-0.075504								0	0	0	0.96208	1	14974	14974		0	0	1				19435	7495	12192	12249	18661	18661					0.2856436754348124
LLLLLQIPRVV	11	Unmodified	_LLLLLQIPRVV_					0	0	0			REV__ENST00000454498.6_1_8:19363479-19448754:-|nuORF	REV__ENST00000454498.6_1_8:19363479-19448754:-|nuORF	MSMS	HCT116MG_D190212_S2	2	638.951904296875	2	638.939391	1275.86423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.168	1	48.035	47.535	48.535	-0.13281								0	0	0	0.9598	1	18394	18394		1.1933	0	1		+		19436	15735	12193	12250	18662	18662					0.23733124735508682
LLLLQIPRVVL	11	Unmodified	_LLLLQIPRVVL_					0	0	0			REV__ENST00000454498.6_1_8:19363479-19448754:-|nuORF	REV__ENST00000454498.6_1_8:19363479-19448754:-|nuORF	MSMS	HCT116MG_D190212_S2	2	426.2949523925781	3	426.295353	1275.86423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.469	1	55.283	54.783	55.783	-0.18565								0	0	0	0.95636	1	21383	21383		1.2148	0.51716	1		+		19437	15735	12194	12251	18663	18663					0.2373312473553142
LLLLQKIP	8	Unmodified	_LLLLQKIP_					0	0	0		ENST00000373874.6_1_20:35220081-35220303:+|nuORF	ENST00000373874.6_1_20:35220081-35220303:+|nuORF	ENST00000373874.6_1_20:35220081-35220303:+|nuORF	MSMS	HCT116MG_D190212_S1	1	469.324462890625	2	469.325871	936.637189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.406	1	36.406	35.906	36.906	0								0	0	0	0.8837	1	13570	13570		11.114	0	1				19438	7483	12195	12252	18664	18664					0.16633586247417043
LLLLRPPGAMN	11	Unmodified	_LLLLRPPGAMN_					0	0	0			REV__ENST00000578509.1_1_17:80274885-80275395:-|nuORF	REV__ENST00000578509.1_1_17:80274885-80275395:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	597.8563842773438	2	597.855001	1193.69545	0.42612	0.00025476	1.3644	0.00081573	1.7906	0.0010705	597.8557276076442	48.725	0.51557	48.725	48.511	49.027	0					24	9	3	0	0	0	0.74191	1	18557	18557		2.7352	0	1	55100000	+		19439	16612	12196	12253	18665	18665					0.10634899830392897
LLLLVKSLL	9	Unmodified	_LLLLVKSLL_					0	0	0		ENST00000562413.2_1_6:147124063-147124576:-|nuORF	ENST00000562413.2_1_6:147124063-147124576:-|nuORF	ENST00000562413.2_1_6:147124063-147124576:-|nuORF	MSMS	HCT116MG_D190212_S3	3	506.4201965332031	2	506.362453	1010.71035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.075	1	59.823	59.323	60.323	-0.25233								0	0	0	0.77008	1	22894	22894		0.6015	0	1				19440	8826	12197	12254	18666	18666					0.20542714970031284
LLLLWRRRQKR	11	Unmodified	_LLLLWRRRQKR_					0	0	0		ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	MSMS	HCT116MG_D190212_S2	2	769.2738037109375	2	769.499336	1536.98412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.62	1	42.55	42.05	43.05	-0.069984								0	0	0	0.96208	1	16137	16137		0	0	1				19441	6150	12198	12255	18667	18667					0.23710550852661072
LLLMVLML	8	Unmodified	_LLLMVLML_					0	0	0		ENSG00000145040|ENST00000273610|UCN2	ENSG00000145040|ENST00000273610|UCN2	ENSG00000145040|ENST00000273610|UCN2	MSMS	HCT116MG_D190212_S1	1	473.2966003417969	2	473.29741	944.580268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.75	1	49.75	49.25	50.25	0								0	0	0	0.8837	1	18965	18965		11.114	0	1				19442	3893	12199	12256	18668	18668					0.10576079375039171
LLLPAVPVGA	10	Unmodified	_LLLPAVPVGA_					0	0	0		MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant;MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant;MEGF6|p.A1440Hfs*78|2|0.41|ENSG00000162591|chr1:3493840-3493840|C/-|frameshift_variant;ENSG00000162591|ENST00000356575|MEGF6	MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	949.6087036132812	1	949.60808	948.600803	0.72036	0.00068406	0.0013855	1.3157E-06	0.72175	0.00068538	949.6078674674319	55.775	0.25945	55.59	55.431	55.691	-0.18565					8	4	3	0	0	0	0.037984	1	21519	21519		96.119	42.543	1	43480000			19443	4531	12200	12257	18669	18669					0.12444709350711491
LLLPCLVLVP	10	Unmodified	_LLLPCLVLVP_					0	0	0		KRT12|p.G55Efs*56|1|0.33|ENSG00000187242|chr17:40867023-40867023|C/-|frameshift_variant	KRT12|p.G55Efs*56|1|0.33|ENSG00000187242|chr17:40867023-40867023|C/-|frameshift_variant	KRT12|p.G55Efs*56|1|0.33|ENSG00000187242|chr17:40867023-40867023|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	540.3486328125	2	540.348489	1078.68242	0.58472	0.00031595	-0.16445	-8.8862E-05	0.42026	0.00022709	540.3482603969452	56.261	0.36127	56.078	55.898	56.259	-0.18261					10	6	2	0	0	0	0.87641	1	21740	21740		4.3292	4.3292	1	10671000			19444	9271	12201	12258	18670	18670					0.1462306871826513
LLLPCLVLVP	10	Unmodified	_LLLPCLVLVP_					0	0	0		KRT12|p.G55Efs*56|1|0.33|ENSG00000187242|chr17:40867023-40867023|C/-|frameshift_variant	KRT12|p.G55Efs*56|1|0.33|ENSG00000187242|chr17:40867023-40867023|C/-|frameshift_variant	KRT12|p.G55Efs*56|1|0.33|ENSG00000187242|chr17:40867023-40867023|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	540.3490600585938	2	540.348489	1078.68242	0.60366	0.00032619	-0.064039	-3.4604E-05	0.53962	0.00029158	540.3483604059141	56.452	0.36794	56.146	55.937	56.305	-0.30626					12	6	3	0	0	0	0.88673	1	21193	21193		1.8442	1.8442	1	1646800			19445	9271	12201	12258	18671	18671					0.1462306871826513
LLLPGIYTV	9	Unmodified	_LLLPGIYTV_					0	0	0		ENSG00000120054|ENST00000370418|CPN1	ENSG00000120054|ENST00000370418|CPN1	ENSG00000120054|ENST00000370418|CPN1	MSMS	HCT116MG_D190212_S2	2	494.8055419921875	2	494.807511	987.600469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.944	1	55.758	55.258	56.258	-0.18565								0	0	0	0.58443	1	21576	21576		24.674	0	1				19446	2680	12202	12259	18672	18672					0.10617289630852156
LLLPGPSAA	9	Unmodified	_LLLPGPSAA_					0	0	0		ENSG00000166794|ENST00000300026|PPIB;PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant;ENST00000561048.1_1_15:64452264-64455191:-|nuORF	ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	MULTI-MSMS	HCT116MG_D190212_S1	1	838.5038452148438	1	838.503281	837.496004	0.88353	0.00074085	-0.7632	-0.00063994	0.12034	0.0001009	838.502844865365	46.725	0.31134	46.725	46.543	46.855	0					8	5	2	0	0	0	0.026974	1	17765	17765		89.427	0	1	9437500			19447	4879	12203	12260	18673	18673					0.07075587874123812
LLLPGPSAA	9	Unmodified	_LLLPGPSAA_					0	0	0		ENSG00000166794|ENST00000300026|PPIB;PPIB|p.V69Sfs*6|1|0.21|ENSG00000166794|chr15:64162084-64162085|AC/-|frameshift_variant;ENST00000561048.1_1_15:64452264-64455191:-|nuORF	ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	MULTI-MSMS	HCT116MG_D190212_S2	2	838.5062255859375	1	838.503281	837.496004	1.1578	0.0009708	0.45037	0.00037763	1.6081	0.0013484	838.5037763703	46.898	0.3588	46.78	46.619	46.978	-0.11796					11	6	2	0	0	0	0.019399	1	17890	17890		97.075	19.09	1	28401000			19448	4879	12203	12260	18674	18674					0.07075587874123812
LLLPLLLRPL	10	Unmodified	_LLLPLLLRPL_					0	0	0			REV__ENSG00000180340|ENST00000315323|FZD2	REV__ENSG00000180340|ENST00000315323|FZD2	MSMS	HCT116MG_D190212_S1	1	580.911865234375	2	580.910102	1159.80565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.583	1	44.583	44.083	45.083	0								0	0	0	0.96911	1	16870	16870		0.45834	0	1		+		19449	13657	12204	12261	18675	18675					0.23214068161109935
LLLPLLRVKLL	11	Unmodified	_LLLPLLRVKLL_					0	0	0		ENST00000313349.3_1_2:64861977-64862394:-|nuORF	ENST00000313349.3_1_2:64861977-64862394:-|nuORF	ENST00000313349.3_1_2:64861977-64862394:-|nuORF	MSMS	HCT116MG_D190212_S1	1	645.9630737304688	2	645.965409	1289.91626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.393	1	31.393	30.893	31.893	0								0	0	0	0.96141	1	11549	11549		0.35063	0	1				19450	7071	12205	12262	18676	18676					0.2829028814933281
LLLPLLRVKLL	11	Unmodified	_LLLPLLRVKLL_					0	0	0		ENST00000313349.3_1_2:64861977-64862394:-|nuORF	ENST00000313349.3_1_2:64861977-64862394:-|nuORF	ENST00000313349.3_1_2:64861977-64862394:-|nuORF	MSMS	HCT116MG_D190212_S1	1	645.9673461914062	2	645.965409	1289.91626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.928	1	62.928	62.428	63.428	0								0	0	0	0.96208	1	24308	24308		0	0	1				19451	7071	12205	12262	18677	18677					0.2829028814933281
LLLRNSSLWEY	11	Unmodified	_LLLRNSSLWEY_					0	0	0		ENST00000540215.1_1_13:111296932-111298616:-|nuORF;ENST00000537802.5_1_13:111296499-111298616:-|nuORF;ENST00000535516.5_1_13:111293886-111298616:-|nuORF	ENST00000540215.1_1_13:111296932-111298616:-|nuORF	ENST00000540215.1_1_13:111296932-111298616:-|nuORF	MSMS	HCT116MG_D190212_S1	1	697.0381469726562	2	697.377352	1392.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.984	1	30.984	30.484	31.484	0								0	0	0	0.95196	1	11384	11384		5.2969	0.39987	1				19452	8662	12206	12263	18678	18678					0.05949002177453622
LLLRRKFIPDP	11	Unmodified	_LLLRRKFIPDP_					0	0	0		ENST00000490885.6_1_1:186645551-186649536:-|nuORF;ENSG00000073756|ENST00000367468|PTGS2	ENST00000490885.6_1_1:186645551-186649536:-|nuORF	ENST00000490885.6_1_1:186645551-186649536:-|nuORF	MSMS	HCT116MG_D190212_S2	2	684.4303588867188	2	684.429722	1366.84489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.107	1	57.937	57.437	58.437	-0.1703								0	0	0	0.94284	1	22448	22448		10.074	0.6908	1				19453	1287	12207	12264	18679	18679					0.17614168444652023
LLLSASQVLTP	11	Unmodified	_LLLSASQVLTP_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MSMS	HCT116MG_D190212_S4	4	571.3458251953125	2	571.344989	1140.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.696	1	30.332	29.832	30.832	-0.36416								0	0	0	0.9469	1	11110	11110		6.2058	0	1		+		19454	13325	12208	12265	18680	18680					0.11071427371439313
LLLSILKKLI	10	Unmodified	_LLLSILKKLI_					0	0	0		ENST00000558598.1_1_15:77236162-77236210:+|nuORF	ENST00000558598.1_1_15:77236162-77236210:+|nuORF	ENST00000558598.1_1_15:77236162-77236210:+|nuORF	MSMS	HCT116MG_D190212_S1	1	577.419921875	2	577.41776	1152.82097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.884	1	50.884	50.384	51.384	0								0	0	0	0.97116	1	19427	19427		0	0	1				19455	8804	12209	12266	18681	18681					0.2506693495829495
LLLTGEAL	8	Unmodified	_LLLTGEAL_					0	0	0			REV__ENST00000450633.6_1_3:127291966-127292347:-|nuORF	REV__ENST00000450633.6_1_3:127291966-127292347:-|nuORF	MSMS	HCT116MG_D190212_S4	4	415.25360107421875	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.106	1	62.862	62.362	63.362	-0.24392								0	0	0	0.8837	1	23821	23821		2.5775	0	1		+		19456	15705	12210	12267	18682	18682					0.07456168154271836
LLLTKNTT	8	Unmodified	_LLLTKNTT_					0	0	0			REV__POLQ|p.K1304Lfs*11|1|0.06|ENSG00000051341|chr3:121489022-121489023|-/GAAGGAGT|frameshift_variant	REV__POLQ|p.K1304Lfs*11|1|0.06|ENSG00000051341|chr3:121489022-121489023|-/GAAGGAGT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	452.2780456542969	2	452.279118	902.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.725	1	41.725	41.225	42.225	0								0	0	0	0.8837	1	15719	15719		2.8892	0	1		+		19457	17430	12211	12268	18683	18683					0.0885124207430863
LLLTSCKKKKK	11	Unmodified	_LLLTSCKKKKK_					0	0	0		ENST00000356978.8_1_14:90871105-90871177:+|nuORF	ENST00000356978.8_1_14:90871105-90871177:+|nuORF	ENST00000356978.8_1_14:90871105-90871177:+|nuORF	MSMS	HCT116MG_D190212_S2	2	645.4221801757812	2	645.420508	1288.82646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.004	1	43.925	43.425	44.425	-0.078373								0	0	0	0.95113	1	16701	16701		5.7319	1.4026	1				19458	7305	12212	12269	18684	18684					0.1936029047840293
LLLVFIMKGY	10	Unmodified	_LLLVFIMKGY_					0	0	0			REV__GYPA|p.I5M|1|0.41|ENSG00000170180|chr4:144140621-144140621|T/C|missense_variant	REV__GYPA|p.I5M|1|0.41|ENSG00000170180|chr4:144140621-144140621|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	599.4124755859375	2	598.859221	1195.70389	0.7265	0.00043507	0.12399	7.4253E-05	0.85049	0.00050932	598.8593433597346	51.601	0.56585	51.417	51.218	51.784	-0.18369					15	10	2	0	0	0	0.2912	1	19923	19923		21.747	5.8995	1	11116000	+		19459	16865	12213	12270	18685	18685					0.11386453747036285
LLMKLWLG	8	Unmodified	_LLMKLWLG_					0	0	0			REV__ENST00000342992.10_3_2:179437654-179437981:-|nuORF	REV__ENST00000342992.10_3_2:179437654-179437981:-|nuORF	MSMS	HCT116MG_D190212_S4	4	487.2991638183594	2	487.298799	972.583045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.463	1	48.096	47.596	48.596	-0.36728								0	0	0	0.8837	1	17950	17950		6.3541	0	1		+		19460	14988	12214	12271	18686	18686					0.09565670824213157
LLMRVIAGHI	10	Unmodified	_LLMRVIAGHI_					0	0	0			REV__nc|ENSG00000184321|Q9H342|OR51J1	REV__nc|ENSG00000184321|Q9H342|OR51J1	MULTI-MSMS	HCT116MG_D190212_S2	2	563.05859375	2	561.844436	1121.67432	0.47764	0.00026836	1.3728	0.00077128	1.8504	0.0010396	561.8455664626817	51.623	1.0816	51.439	51.166	52.248	-0.18369					34	20	3	0	0	0	0.84919	1	19749	19749		7.9102	7.9102	1	26762000	+		19461	17242	12215	12272	18687	18687					0.11834934521539253
LLMTCAWSI	9	Unmodified	_LLMTCAWSI_					0	0	0			REV__ENST00000255078.7_1_11:68673703-68675675:+|nuORF	REV__ENST00000255078.7_1_11:68673703-68675675:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.763427734375	2	519.261556	1036.50856	0.23662	0.00012287	-0.82858	-0.00043025	-0.59196	-0.00030738	519.7629905177882	36.888	0.25987	36.587	36.457	36.717	-0.30113					6	4	2	0	0	0	0.21838	1	13674	13674		14.838	0	1	3981200	+		19462	14604	12216	12273	18688	18688					-0.008234600494915867
LLMTGRLKKY	10	Unmodified	_LLMTGRLKKY_					0	0	0		ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	MSMS	HCT116MG_D190212_S4	4	408.2499694824219	3	408.249526	1221.72675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.222	1	38.841	38.341	39.341	-0.38055								0	0	0	0.96183	1	14403	14403		2.086	0	1				19463	1608	12217	12274	18689	18689					0.12475472864480253
LLMVVLVLSY	10	Unmodified	_LLMVVLVLSY_					0	0	0		ENSG00000214042|ENST00000239347|IFNA7	ENSG00000214042|ENST00000239347|IFNA7	ENSG00000214042|ENST00000239347|IFNA7	MULTI-MSMS	HCT116MG_D190212_S2	2	575.3516235351562	2	575.351228	1148.6879	0.26041	0.00014983	0.10486	6.0329E-05	0.36527	0.00021016	575.3511369636935	53.715	1.1315	53.526	53.121	54.252	-0.1894					40	21	2	0	0	0	0.87949	1	20809	20809		6.7232	5.0705	1	241540000			19464	6427	12218	12275	18690	18690					0.1195074751010452
LLNAVELKGYK	11	Unmodified	_LLNAVELKGYK_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	HCT116MG_D190212_S1	1	625.0474853515625	2	624.371538	1246.72852	0.66317	0.00041407	-2.3725	-0.0014813	-1.7094	-0.0010673	624.8728408528553	56.352	0.25768	56.352	56.171	56.428	0					5	4	2	0	0	0	0.36397	1	21602	21602		8.7454	3.0136	1	5568600	+		19465	9934	12219	12276	18691	18691					0.11502805154077578
LLNDHIYVV	9	Unmodified	_LLNDHIYVV_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MSMS	HCT116MG_D190212_S2	2	543.3032836914062	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.597	1	47.464	46.964	47.964	-0.13281								0	0	0	0.094105	1	18160	18160		57.722	13.864	1				19466	2562	12220	12277	18692	18692					0.05278315994382865
LLNDSGRYSL	10	Unmodified	_LLNDSGRYSL_					0	0	0		nc|ENSG00000196284|O75486-4|SUPT3H	nc|ENSG00000196284|O75486-4|SUPT3H	nc|ENSG00000196284|O75486-4|SUPT3H	MSMS	HCT116MG_D190212_S2	2	569.2966918945312	2	569.29857	1136.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.729	1	45.628	45.128	46.128	-0.1014								0	0	0	0.87399	1	17399	17399		19.257	2.3147	1				19467	9595	12221	12278	18693	18693					0.01975922638052907
LLNGVKLVV	9	Unmodified	_LLNGVKLVV_					0	0	0		ENST00000563808.1_1_15:89424564-89438702:-|nuORF;ENSG00000140511|ENST00000359595|HAPLN3	ENST00000563808.1_1_15:89424564-89438702:-|nuORF	ENST00000563808.1_1_15:89424564-89438702:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	478.7856750488281	2	477.820953	953.627353	0.16096	7.6908E-05	-0.071159	-3.4001E-05	0.089796	4.2906E-05	477.82086808912163	52.099	0.25958	52.099	51.968	52.228	0					8	4	2	0	0	0	0.19218	1	19930	19930		42.095	2.1372	1	35294000			19468	3668	12222	12279	18694	18694					0.14868398242049352
LLNRGPVIIN	10	Unmodified	_LLNRGPVIIN_					0	0	0		SIX5|p.G340R|1|0.11|ENSG00000177045|chr19:45766941-45766941|C/T|missense_variant	SIX5|p.G340R|1|0.11|ENSG00000177045|chr19:45766941-45766941|C/T|missense_variant	SIX5|p.G340R|1|0.11|ENSG00000177045|chr19:45766941-45766941|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	554.84619140625	2	554.84549	1107.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.48	1	56.48	55.98	56.98	0								0	0	0	0.95351	1	21714	21714		3.9444	0.3479	1				19469	18152	12223	12280	18695	18695					0.12689686531007283
LLNSSLDLHKL	11	Unmodified	_LLNSSLDLHKL_					0	0	0			REV__TLR8|p.N912Tfs*6|1|0.39|ENSG00000101916|chrX:12921771-12921771|A/-|frameshift_variant	REV__TLR8|p.N912Tfs*6|1|0.39|ENSG00000101916|chrX:12921771-12921771|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	418.24713134765625	3	418.246839	1251.71869	0.19704	8.241E-05	0.033592	1.405E-05	0.23063	9.6459E-05	418.2468416651488	36.328	0.25912	36.2	36.071	36.33	-0.12799					7	4	2	0	0	0	0.56417	1	13608	13608		39.413	1.6415	1	28510000	+		19470	11138	12224	12281	18696	18696					0.10289617148691832
LLNYIDLPV	9	Unmodified	_LLNYIDLPV_					0	0	0		ENSG00000088205|ENST00000263239|DDX18;ENST00000461443.1_1_2:118582593-118583205:+|nuORF;ENST00000476149.1_1_2:118582113-118584081:+|nuORF	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.3059692382812	2	530.307875	1058.6012	0.42513	0.00022545	-2.7971	-0.0014833	-2.3719	-0.0012578	530.3059025834863	45.77	0.25629	45.669	45.556	45.812	-0.1014					6	4	2	0	0	0	0.25445	1	17453	17453		8.5933	7.9029	1	16418000			19471	1492	12225	12282	18697	18697					0.07424084279887211
LLPDIKLLL	9	Unmodified	_LLPDIKLLL_					0	0	0			REV__ENSG00000169288|ENST00000315567|MRPL1	REV__ENSG00000169288|ENST00000315567|MRPL1	MULTI-MSMS	HCT116MG_D190212_S3	3	519.352294921875	2	519.352086	1036.68962	0.5102	0.00026497	-0.06744	-3.5025E-05	0.44276	0.00022995	519.3520063821306	57.767	0.20829	57.492	57.412	57.62	-0.27434					7	3	3	0	0	0	0.12994	1	21981	21981		52.268	16.224	1	6276200	+		19472	13236	12226	12283	18698	18698					0.1727412459038078
LLPDLIQKV	9	Unmodified	_LLPDLIQKV_					0	0	0		nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	nc|ENSG00000141279|P55786-2|NPEPPS	nc|ENSG00000141279|P55786-2|NPEPPS	MULTI-MSMS	HCT116MG_D190212_S2	2	519.8316650390625	2	519.831517	1037.64848	0.51926	0.00026993	-0.71813	-0.00037331	-0.19888	-0.00010338	520.3327709195601	52.251	0.67029	52.064	51.677	52.347	-0.18725					25	12	4	0	0	0	0.077982	1	20073	20073		62.573	2.4988	1	50433000			19473	3707	12227	12284	18699	18699					0.13116363550898313
LLPFLSLCL	9	Unmodified	_LLPFLSLCL_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	509.80377197265625	2	509.803914	1017.59328	0.28579	0.0001457	-0.39782	-0.00020281	-0.11203	-5.7112E-05	509.803601694359	47.653	1.0378	47.653	47.062	48.1	0					33	20	3	0	0	0	0.64512	1	18235	18235		8.5933	0	1	60584000			19474	9090	12228	12285	18700	18700					0.08518233758763927
LLPGPAGY	8	Unmodified	_LLPGPAGY_					0	0	0			REV__ENSG00000186766|ENST00000388920|FOXI2	REV__ENSG00000186766|ENST00000388920|FOXI2	MULTI-MSMS	HCT116MG_D190212_S2	2	787.435791015625	1	787.434867	786.42759	1.3064	0.0010287	-0.092489	-7.2829E-05	1.2139	0.00095591	787.4347633158305	36.018	0.30974	35.89	35.709	36.019	-0.12799					10	5	3	0	0	0	0.75115	1	13458	13458		17.087	17.087	1	48146000	+		19475	13897	12229	12286	18701	18701					0.025833432942818035
LLPGRPVQQR	10	Unmodified	_LLPGRPVQQR_					0	0	0		chr6:31715624-31717460|309|26.82|0.37|6.17|+|ENST00000375824|LY6G6F-LY6G6D,LY6G6D	chr6:31715624-31717460|309|26.82|0.37|6.17|+|ENST00000375824|LY6G6F-LY6G6D,LY6G6D	chr6:31715624-31717460|309|26.82|0.37|6.17|+|ENST00000375824|LY6G6F-LY6G6D,LY6G6D	MULTI-MSMS	HCT116MG_D190212_S2	2	582.3538208007812	2	582.354014	1162.69348	0.4747	0.00027644	-0.80092	-0.00046642	-0.32622	-0.00018997	582.3533413194422	55.191	0.66236	55.003	54.611	55.273	-0.18797					26	12	4	0	0	0	0.87829	1	21260	21260		3.9444	3.9444	1	39463000			19476	456	12230	12287	18702	18702					0.1186360713677459
LLPHIEDED	9	Unmodified	_LLPHIEDED_					0	0	0			REV__ENST00000479510.2_1_6:33387852-33406697:+|nuORF	REV__ENST00000479510.2_1_6:33387852-33406697:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	540.488037109375	2	540.764029	1079.5135	0.795	0.00042991	0.20113	0.00010877	0.99613	0.00053867	540.7642022596744	33.294	0.98476	33.101	32.758	33.742	-0.19297					39	18	3	0	0	0	0.49914	1	12248	12248		16.942	0	1	87550000	+		19477	14065	12231	12288	18703	18703					-0.023071613815318415
LLPILLTTE	9	Unmodified	_LLPILLTTE_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MSMS	HCT116MG_D190212_S1	1	506.8176574707031	2	506.818076	1011.6216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.801	1	11.801	11.301	12.301	0								0	0	0	0.77025	1	3746	3746		0	0	1				19478	6257	12232	12289	18704	18704					0.11625254939690421
LLPLCWVL	8	Unmodified	_LLPLCWVL_					0	0	0		ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant;nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant	ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	478.7857360839844	2	478.785524	955.556496	0.2495	0.00011945	0.018387	8.8033E-06	0.26788	0.00012826	478.78542442171465	51.473	0.82274	51.29	51.065	51.887	-0.1831					17	15	2	0	0	0	0.8029	1	19771	19771		11.114	0	1	9446100			19479	4245	12233	12290	18705	18705					0.0769398193286861
LLPLCWVL	8	Unmodified	_LLPLCWVL_					0	0	0		ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant;nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant	ZFYVE27|p.K254Efs*26|1|0.39|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	478.785524	955.556496	0.2495	0.00011945	0.018387	8.8033E-06	0.26788	0.00012826	478.78542442171465	51.473	0.82274	51.29	51.065	51.887	-0.1831	0.039581	7.5696E-05	NaN	11.114	17	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9446100			19480	4245	12233	12290							0.0769398193286861
LLPLLLLLRR	10	Unmodified	_LLPLLLLLRR_					0	0	0			REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	MSMS	HCT116MG_D190212_S4	4	407.21197509765625	3	407.291943	1218.854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.325	1	58.036	57.536	58.536	-0.28879								0	0	0	0.97116	1	21918	21918		0	0	1		+		19481	16444	12234	12291	18706	18706					0.25332561800951225
LLPLLLLLRR	10	Unmodified	_LLPLLLLLRR_					0	0	0			REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	MSMS	HCT116MG_D190212_S4	4	407.2907409667969	3	407.291943	1218.854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.447	1	58.158	57.658	58.658	-0.28879								0	0	0	0.97116	1	21968	21968		0	0	1		+		19482	16444	12234	12291	18707	18707					0.25332561800951225
LLPPLISFL	9	Unmodified	_LLPPLISFL_					0	0	0		ENST00000552699.5_1_12:50156680-50156842:+|nuORF	ENST00000552699.5_1_12:50156680-50156842:+|nuORF	ENST00000552699.5_1_12:50156680-50156842:+|nuORF	MSMS	HCT116MG_D190212_S2	2	506.8249816894531	2	506.825704	1011.63685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.114	1	57.943	57.443	58.443	-0.1703								0	0	0	0.7676	1	22451	22451		9.3474	0	1				19483	8765	12235	12292	18708	18708					0.13150166527566398
LLPPPPCPA	9	Unmodified	_LLPPPPCPA_					0	0	0		nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;FUCA2|p.I367Mfs*27|1|0.31|ENSG00000001036|chr6:143501982-143501985|ATAA/-|frameshift_variant;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4;ENSG00000001036|ENST00000002165|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	MULTI-MSMS	HCT116MG_D190212_S2	2	452.751708984375	2	452.751682	903.48881	0.16744	7.5808E-05	0.2479	0.00011224	0.41533	0.00018804	452.75162004230486	41.915	0.77637	41.847	41.498	42.274	-0.068195					23	14	2	0	0	0	0.3246	1	15859	15859		28.173	3.9633	1	13230000			19484	784	12236	12293	18709	18709					0.03320532002044274
LLPPPPRVGG	10	Unmodified	_LLPPPPRVGG_					0	0	0		ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant;ITGA5|p.L399Wfs*26|2|0.4|ENSG00000161638|chr12:54405196-54405196|G/-|frameshift_variant;ENSG00000161638|ENST00000293379|ITGA5	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	501.7835998535156	2	501.808377	1001.6022	0.47505	0.00023838	0.67751	0.00033998	1.1526	0.00057836	501.80850523705305	34.865	0.26015	34.865	34.753	35.013	0					8	4	2	0	0	0	0.27462	1	12962	12962		30.637	0	1	6270300			19485	4489	12237	12294	18710	18710					0.10146343439475913
LLPRRSPL	8	Unmodified	_LLPRRSPL_					0	0	0		ENST00000510626.5_1_4:3131650-3131884:+|nuORF	ENST00000510626.5_1_4:3131650-3131884:+|nuORF	ENST00000510626.5_1_4:3131650-3131884:+|nuORF	MSMS	HCT116MG_D190212_S2	2	476.3065185546875	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.103	1	52.914	52.414	53.414	-0.18922								0	0	0	0.8837	1	20414	20414		5.7604	0.52976	1				19486	8496	12238	12295	18711	18711					0.12525763159328562
LLPRWTAYVP	10	Unmodified	_LLPRWTAYVP_					0	0	0		ENST00000540046.5_1_12:121001406-121001742:+|nuORF	ENST00000540046.5_1_12:121001406-121001742:+|nuORF	ENST00000540046.5_1_12:121001406-121001742:+|nuORF	MSMS	HCT116MG_D190212_S2	2	608.4558715820312	2	608.347866	1214.68118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.166	1	36.038	35.538	36.538	-0.12799								0	0	0	0.92272	1	13516	13516		10.824	0	1				19487	8686	12239	12296	18712	18712					0.08242570673724003
LLPSCCFGLA	10	Unmodified	_LLPSCCFGLA_					0	0	0		ENST00000495880.1_1_3:52083316-52083664:-|nuORF	ENST00000495880.1_1_3:52083316-52083664:-|nuORF	ENST00000495880.1_1_3:52083316-52083664:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2546997070312	2	512.253731	1022.49291	0.42873	0.00021962	-0.6606	-0.0003384	-0.23188	-0.00011878	512.2534234809251	34.394	1.2433	34.219	33.76	35.004	-0.17511					58	23	4	0	0	0	0.68372	1	12715	12715		21.747	0.87544	1	101100000			19488	8385	12240	12297	18713	18713					-0.017437465665352647
LLPSVAKK	8	Unmodified	_LLPSVAKK_					0	0	0			REV__nc|ENSG00000055332|P19525-2|EIF2AK2	REV__nc|ENSG00000055332|P19525-2|EIF2AK2	MSMS	HCT116MG_D190212_S1	1	428.28680419921875	2	428.286746	854.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.531	1	20.531	20.031	21.031	0								0	0	0	0.8837	1	7180	7180		5.7604	0	1		+		19489	10647	12241	12298	18714	18714					0.12584153662180597
LLQALTAA	8	Unmodified	_LLQALTAA_					0	0	0		ENST00000572067.1_1_16:67917377-67917635:+|nuORF	ENST00000572067.1_1_16:67917377-67917635:+|nuORF	ENST00000572067.1_1_16:67917377-67917635:+|nuORF	MSMS	HCT116MG_D190212_S4	4	400.74591064453125	2	400.747453	799.480354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.168	1	41.792	41.292	42.292	-0.37565								0	0	0	0.8837	1	15488	15488		2.8892	0	1				19490	8900	12242	12299	18715	18715					0.07259301357066761
LLQDHPWLL	9	Unmodified	_LLQDHPWLL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	HCT116MG_D190212_S2	2	567.8194580078125	2	567.818941	1133.62333	0.52202	0.00029641	0.24988	0.00014188	0.7719	0.0004383	567.8189200525613	56.313	0.15535	56.13	56.052	56.207	-0.18261					4	2	2	0	0	0	0.26031	1	21755	21755		34.932	8.6639	1	18433000			19491	3145	12243	12300	18716	18716					0.06186308748328884
LLQEVEHQL	9	Unmodified	_LLQEVEHQL_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;TRIM37|p.P935Rfs*15|1|0.29|ENSG00000108395|chr17:59001606-59001606|G/-|frameshift_variant;ENSG00000108395|ENST00000262294|TRIM37;ENST00000582852.1_1_17:57141714-57157166:-|nuORF	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MSMS	HCT116MG_D190212_S1	1	554.8035888671875	2	554.803488	1107.59242	0.18494	0.00010261	-0.41899	-0.00023246	-0.23405	-0.00012985	554.8035092366615	40.617	0.15059	40.617	40.539	40.69	0					4	2	2	0	0	0	0.066823	1	15295	15295		66.457	22.598	1	12627000			19492	2158	12244	12301	18717	18717					0.0429311064342528
LLQEVEHQL	9	Unmodified	_LLQEVEHQL_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;TRIM37|p.P935Rfs*15|1|0.29|ENSG00000108395|chr17:59001606-59001606|G/-|frameshift_variant;ENSG00000108395|ENST00000262294|TRIM37;ENST00000582852.1_1_17:57141714-57157166:-|nuORF	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MSMS	HCT116MG_D190212_S2	2	554.803466796875	2	554.803488	1107.59242	0.50513	0.00028025	-0.21274	-0.00011803	0.29239	0.00016222	554.8032135570988	40.666	0.30875	40.596	40.416	40.725	-0.069626					8	5	2	0	0	0	0.0067688	1	15350	15350		122.18	50.257	1	23520000			19493	2158	12244	12301	18718	18718					0.0429311064342528
LLQGGLAL	8	Unmodified	_LLQGGLAL_					0	0	0			REV__ENST00000405709.6_1_7:110303569-110303653:-|nuORF	REV__ENST00000405709.6_1_7:110303569-110303653:-|nuORF	MSMS	HCT116MG_D190212_S3	3	392.7485046386719	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.65	1	52.343	51.843	52.843	-0.30639								0	0	0	0.8837	1	19908	19908		0.79363	0	1		+		19494	15408	12245	12302	18719	18719					0.0850360521968696
LLQIHPHSE	9	Unmodified	_LLQIHPHSE_					0	0	0			REV__nc|ENSG00000106100|Q9Y239-2|NOD1	REV__nc|ENSG00000106100|Q9Y239-2|NOD1	MSMS	HCT116MG_D190212_S2	2	537.2673950195312	2	537.290548	1072.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.733	1	33.54	33.04	34.04	-0.19297								0	0	0	0.76793	1	12527	12527		7.9102	1.5561	1		+		19495	11286	12246	12303	18720	18720					0.03316261191821468
LLQIVRAGSAG	11	Unmodified	_LLQIVRAGSAG_					0	0	0		ENST00000422843.7_1_5:156638304-156665140:+|nuORF	ENST00000422843.7_1_5:156638304-156665140:+|nuORF	ENST00000422843.7_1_5:156638304-156665140:+|nuORF	MSMS	HCT116MG_D190212_S1	1	362.2221374511719	3	362.220624	1083.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.53	1	46.53	46.03	47.03	0								0	0	0	0.95665	1	17656	17656		2.8433	0.10809	1				19496	7795	12247	12304	18721	18721					0.10156809634258934
LLQLRYRPVLR	11	Unmodified	_LLQLRYRPVLR_					0	0	0			REV__ENSG00000162063|ENST00000397066|CCNF	REV__ENSG00000162063|ENST00000397066|CCNF	MSMS	HCT116MG_D190212_S3	3	713.9555053710938	2	713.953895	1425.89324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.391	1	51.08	50.58	51.58	-0.31166								0	0	0	0.95636	1	19403	19403		2.9952	1.5133	1		+		19497	12868	12248	12305	18722	18722					0.1973266208451605
LLQQQQQQL	9	Unmodified	_LLQQQQQQL_					0	0	0		ENSG00000178607|ENST00000433197|ERN1	REV__LIMD1|p.G320Vfs*6|1|0.25|ENSG00000144791|chr3:45595833-45595833|G/-|frameshift_variant	REV__LIMD1|p.G320Vfs*6|1|0.25|ENSG00000144791|chr3:45595833-45595833|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	564.1246337890625	2	563.814387	1125.61422	0.43399	0.00024469	-2.3108	-0.0013029	-1.8768	-0.0010582	563.8127973911644	51.48	0.30889	51.296	51.064	51.373	-0.18369					8	5	2	0	0	0	0.49914	1	19730	19730		16.942	0	1	18461000			19498	12431	12249	12306	18723	18723					0.056439153920109675
LLQRKLWRRR	10	Unmodified	_LLQRKLWRRR_					0	0	0		nc|ENSG00000162897|Q8WWV6|FCAMR;ENSG00000162897|ENST00000324852|FCAMR	nc|ENSG00000162897|Q8WWV6|FCAMR	nc|ENSG00000162897|Q8WWV6|FCAMR	MSMS	HCT116MG_D190212_S2	2	712.9566650390625	2	712.957304	1423.90005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.241	1	28.925	28.425	29.425	-0.31613								0	0	0	0.96937	1	10703	10703		0.40072	0	1				19499	4566	12250	12307	18724	18724					0.2050601975574864
LLQTLSIFE	9	Unmodified	_LLQTLSIFE_					0	0	0		TBC1D9|p.V279Sfs*7|1|0.27|ENSG00000109436|chr4:140678958-140678959|-/T|frameshift_variant;TBC1D9|p.I1211Sfs*11|1|0.2|ENSG00000109436|chr4:140622366-140622366|G/-|frameshift_variant;TBC1D9|p.N1245Kfs*14|1|0.15|ENSG00000109436|chr4:140622261-140622262|-/T|frameshift_variant;ENSG00000109436|ENST00000442267|TBC1D9	TBC1D9|p.V279Sfs*7|1|0.27|ENSG00000109436|chr4:140678958-140678959|-/T|frameshift_variant	TBC1D9|p.V279Sfs*7|1|0.27|ENSG00000109436|chr4:140678958-140678959|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	532.3053588867188	2	532.305332	1062.59611	0.18909	0.00010065	0.20127	0.00010714	0.39035	0.00020779	532.3053773627972	44.173	0.26701	44.173	44.036	44.304	0					9	4	3	0	0	0	0.30117	1	16743	16743		30.637	2.1497	1	12107000			19500	2205	12251	12308	18725	18725					0.0673178041729443
LLQVVQGGRYL	11	Unmodified	_LLQVVQGGRYL_					0	0	0			REV__ENST00000587494.1_1_19:10959184-10970726:+|nuORF	REV__ENST00000587494.1_1_19:10959184-10970726:+|nuORF	MSMS	HCT116MG_D190212_S2	2	623.1505737304688	2	623.36933	1244.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.15	1	33.975	33.475	34.475	-0.17512								0	0	0	0.95113	1	12696	12696		5.7319	0.43497	1		+		19501	14264	12252	12309	18726	18726					0.11153340731198114
LLRAPGSRS	9	Unmodified	_LLRAPGSRS_					0	0	0			REV__ENST00000369872.3_1_1:110009262-110018290:+|nuORF	REV__ENST00000369872.3_1_1:110009262-110018290:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	478.78515625	2	478.785433	955.556313	0.018714	8.9599E-06	0.065435	3.133E-05	0.084149	4.0289E-05	478.785330943384	51.211	0.67065	51.211	50.73	51.4	0					20	12	3	0	0	0	0.71345	1	19549	19549		4.3292	0	1	47161000	+		19502	15151	12253	12310	18727	18727					0.07675698257230579
LLRGRRQRRQH	11	Unmodified	_LLRGRRQRRQH_					0	0	0		ENST00000268296.8_1_16:31373430-31374502:+|nuORF	ENST00000268296.8_1_16:31373430-31374502:+|nuORF	ENST00000268296.8_1_16:31373430-31374502:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	492.6340026855469	3	492.634536	1474.88178	0.28054	0.0001382	0.21477	0.0001058	0.49531	0.00024401	492.63453352561993	54.802	2.2403	54.479	52.838	55.078	-0.32349					107	42	4	0	0	0	0.74191	1	20284	20284		0.08335	0	1	41964000			19503	6912	12254	12311	18728	18728					0.1633327783376899
LLRGRRQRRQH	11	Unmodified	_LLRGRRQRRQH_					0	0	0		ENST00000268296.8_1_16:31373430-31374502:+|nuORF	ENST00000268296.8_1_16:31373430-31374502:+|nuORF	ENST00000268296.8_1_16:31373430-31374502:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	738.4489135742188	2	738.448166	1474.88178	0.93063	0.00068722	0.046078	3.4026E-05	0.97671	0.00072125	738.4480784381832	54.802	2.3964	54.479	52.838	55.234	-0.32349					106	45	4	0	0	0	0.74191	1	20654	20654		0.30703	0.03801	1	71084000			19504	6912	12254	12311	18729	18729					0.1633327783376899
LLRGRRRWLI	10	Unmodified	_LLRGRRRWLI_					0	0	0			REV__ENST00000373433.8_1_20:36662140-36662245:+|nuORF	REV__ENST00000373433.8_1_20:36662140-36662245:+|nuORF	MSMS	HCT116MG_D190212_S3	3	669.9357299804688	2	669.933297	1337.85204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.845	1	55.557	55.057	56.057	-0.28773								0	0	0	0.96911	1	21187	21187		0.45834	0	1		+		19505	15189	12255	12312	18730	18730					0.19662945835739265
LLRGRSVL	8	Unmodified	_LLRGRSVL_					0	0	0			REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|147|3|sense	REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|147|3|sense	MSMS	HCT116MG_D190212_S3	3	457.3010559082031	2	457.300719	912.586885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.071	1	54.779	54.279	55.279	-0.2918								0	0	0	0.8837	1	20882	20882		6.3541	0	1		+		19506	16878	12256	12313	18731	18731					0.12709476642260142
LLRHNALVHKQ	11	Unmodified	_LLRHNALVHKQ_					0	0	0		nc|ENSG00000124782|Q92766-6|RREB1;nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-6|RREB1	nc|ENSG00000124782|Q92766-6|RREB1	MULTI-SECPEP	HCT116MG_D190212_S1	1	664.3975830078125	2	664.89912	1327.78369	0.83047	0.00055218	-0.044718	-2.9733E-05	0.78575	0.00052245	665.4010397498262	54.241	0.71325	54.241	53.975	54.688	0					17	13	2	0	0	0	0.36593	1	20777	20777		1.3295	0	1	17693000			19507	2863	12257	12314	18732	18732					0.13290656465210304
LLRHVAPG	8	Unmodified	_LLRHVAPG_					0	0	0		ENST00000531912.1_1_11:613200-613578:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000533182.5_1_11:612647-613950:-|nuORF;IRF7|p.P384Qfs*68|2|0.31|ENSG00000185507|chr11:613297-613297|T/-|frameshift_variant;nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7	ENST00000531912.1_1_11:613200-613578:-|nuORF	ENST00000531912.1_1_11:613200-613578:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	862.5262451171875	1	862.525747	861.518471	0.84184	0.00072611	3.0802	0.0026567	3.922	0.0033828	862.5255351006639	60.342	1.4359	60.188	59.291	60.727	-0.15441					76	28	3	0	0	0	0.86564	1	23368	23368		2.5775	0	1	20303000			19508	5832	12258	12315	18733	18733					0.08217232062418134
LLRIIYRQEQ	10	Unmodified	_LLRIIYRQEQ_					0	0	0			REV__ENST00000474813.5_1_7:1589488-1595099:-|nuORF	REV__ENST00000474813.5_1_7:1589488-1595099:-|nuORF	MSMS	HCT116MG_D190212_S4	4	666.3907470703125	2	666.393336	1330.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.433	1	34.048	33.548	34.548	-0.38558								0	0	0	0.94339	1	12573	12573		6.2058	0	1		+		19509	13026	12259	12316	18734	18734					0.11996414651230225
LLRILMRFL	9	Unmodified	_LLRILMRFL_					0	0	0			REV__nc|ENSG00000141449|Q9C091-3|GREB1L	REV__nc|ENSG00000141449|Q9C091-3|GREB1L	MSMS	HCT116MG_D190212_S2	2	392.25439453125	3	392.254612	1173.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.268	1	52.081	51.581	52.581	-0.18725								0	0	0	0.76862	1	20074	20074		5.7319	0	1		+		19510	12333	12260	12317	18735	18735					0.16208384452329483
LLRIQKRRVKN	11	Unmodified	_LLRIQKRRVKN_					0	0	0		tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	712.4678344726562	2	712.470244	1422.92593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.413	1	48.269	47.769	48.769	-0.1437								0	0	0	0.95581	1	18495	18495		3.2813	0	1				19511	18535	12261	12318	18736	18736					0.23138869207377866
LLRKLQGA	8	Unmodified	_LLRKLQGA_					0	0	0		tr|U7SLR5|U7SLR5_FUSNUAlkylhydroperoxidereductaseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02145PE=3SV=1	tr|U7SLR5|U7SLR5_FUSNUAlkylhydroperoxidereductaseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02145PE=3SV=1	tr|U7SLR5|U7SLR5_FUSNUAlkylhydroperoxidereductaseCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02145PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	898.5811157226562	1	898.583262	897.575986	1.0591	0.0009517	2.2141	0.0019896	3.2733	0.0029413	898.5807680490976	60.357	2.0609	60.202	59.291	61.352	-0.15441					123	40	4	0	0	0	0.86388	1	23074	23074		2.8892	0	1	18408000			19512	18340	12262	12319	18737	18737					0.12310074267998061
LLRKQKKTKKQ	11	Unmodified	_LLRKQKKTKKQ_					0	0	0			REV__ENST00000471909.1_1_21:45217249-45223652:+|nuORF	REV__ENST00000471909.1_1_21:45217249-45223652:+|nuORF	MSMS	HCT116MG_D190212_S1	1	699.9647827148438	2	699.967003	1397.91945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.157	1	30.157	29.657	30.657	0								0	0	0	0.95581	1	11050	11050		3.2813	0.28607	1		+		19513	12825	12263	12320	18738	18738					0.2364093125599993
LLRKRQGV	8	Unmodified	_LLRKRQGV_					0	0	0			REV__tr|U7SIR4|U7SIR4_FUSNUSmallribosomalsubunitproteinuS15OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsOPE=3SV=1	REV__tr|U7SIR4|U7SIR4_FUSNUSmallribosomalsubunitproteinuS15OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpsOPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	485.73516845703125	2	485.319443	968.624333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.167	1	43.167	42.667	43.667	0								0	0	0	0.8837	1	16301	16301		6.3541	0	1		+		19514	17681	12264	12321	18739	18739					0.13876567907902881
LLRNVPPRQV	10	Unmodified	_LLRNVPPRQV_					0	0	0		ENST00000440595.5_1_20:32580682-32582022:-|nuORF	ENST00000440595.5_1_20:32580682-32582022:-|nuORF	ENST00000440595.5_1_20:32580682-32582022:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	596.3701171875	2	596.369664	1190.72478	0.4744	0.00028292	-0.1396	-8.3251E-05	0.3348	0.00019967	596.3692010647935	61.54	1.6078	61.54	61.004	62.612	0					68	30	3	0	0	0	0.88823	1	23949	23949		1.4819	0.15237	1	9201800			19515	7918	12265	12322	18740	18740					0.13704180170884683
LLRPLHRLMHY	11	Unmodified	_LLRPLHRLMHY_					0	0	0		nc|ENSG00000152767|Q9Y4F1-2|FARP1;FARP1|p.P874Lfs*20|1|0.24|ENSG00000152767|chr13:98440222-98440222|C/-|frameshift_variant;ENSG00000152767|ENST00000319562|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	MSMS	HCT116MG_D190212_S3	3	724.9185791015625	2	724.918998	1447.82344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.876	1	43.569	43.069	44.069	-0.30616								0	0	0	0.95521	1	16385	16385		3.5965	0	1				19516	9502	12266	12323	18741	18741					0.11744460144268487
LLRPNKQRY	9	Unmodified	_LLRPNKQRY_					0	0	0			REV__ENST00000494075.5_1_22:51223617-51227406:+|nuORF	REV__ENST00000494075.5_1_22:51223617-51227406:+|nuORF	MSMS	HCT116MG_D190212_S4	4	594.3521728515625	2	594.354014	1186.69348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.33	1	44.957	44.457	45.457	-0.37266								0	0	0	0.76967	1	16718	16718		2.0598	0.21551	1		+		19517	16068	12267	12324	18742	18742					0.107596071368107
LLRRRKILLAQ	11	Unmodified	_LLRRRKILLAQ_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MSMS	HCT116MG_D190212_S4	4	690.4717407226562	2	690.469712	1378.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.575	1	59.298	58.798	59.798	-0.27731								0	0	0	0.96208	1	22422	22422		0	0	1		+		19518	12761	12268	12325	18743	18743					0.25056654838522263
LLRRRKILLAQ	11	Unmodified	_LLRRRKILLAQ_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MSMS	HCT116MG_D190212_S4	4	690.4708251953125	2	690.469712	1378.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.299	1	60.031	59.531	60.531	-0.26787								0	0	0	0.96208	1	22716	22716		0	0	1		+		19519	12761	12268	12325	18744	18744					0.25056654838522263
LLRRWPRIL	9	Unmodified	_LLRRWPRIL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MSMS	HCT116MG_D190212_S1	1	408.2691650390625	3	408.26802	1221.78223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.582	1	46.582	46.082	47.082	0								0	0	0	0.7694	1	17677	17677		2.9952	0	1		+		19520	11448	12269	12326	18745	18745					0.1802106716711478
LLRSELSAR	9	Unmodified	_LLRSELSAR_					0	0	0		TRAF3|p.H221R|1|0.27|ENSG00000131323|chr14:102889570-102889570|A/G|missense_variant	TRAF3|p.H221R|1|0.27|ENSG00000131323|chr14:102889570-102889570|A/G|missense_variant	TRAF3|p.H221R|1|0.27|ENSG00000131323|chr14:102889570-102889570|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	522.8115234375	2	522.811648	1043.60874	0.38518	0.00020138	-0.042741	-2.2345E-05	0.34244	0.00017903	522.8115593062406	52.508	0.82943	52.202	51.784	52.613	-0.30639					34	15	3	0	0	0	0.60612	1	19759	19759		10.824	0	1	10139000			19521	18659	12270	12327	18746	18746					0.08868236600187629
LLRSKGRDF	9	Unmodified	_LLRSKGRDF_					0	0	0		ENSG00000101197|ENST00000217169|BIRC7;nc|ENSG00000101197|Q96CA5-2|BIRC7	ENSG00000101197|ENST00000217169|BIRC7	ENSG00000101197|ENST00000217169|BIRC7	MULTI-SECPEP	HCT116MG_D190212_S1	1	545.8172607421875	2	546.31964	1090.62473	0.31204	0.00017047	-2.5219	-0.0013778	-2.2099	-0.0012073	546.3187732937065	50.446	0.1546	50.446	50.368	50.523	0					4	2	2	0	0	0	0.25004	1	19257	19257		15.847	5.7733	1	12505000			19522	1763	12271	12328	18747	18747					0.08303942837073919
LLRSRVVASWG	11	Unmodified	_LLRSRVVASWG_					0	0	0			REV__ENST00000594676.1_1_19:40023193-40023817:+|nuORF	REV__ENST00000594676.1_1_19:40023193-40023817:+|nuORF	MSMS	HCT116MG_D190212_S4	4	622.3651123046875	2	622.367121	1242.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.55	1	32.171	31.671	32.671	-0.37924								0	0	0	0.95581	1	11860	11860		3.2813	1.6287	1		+		19523	16714	12272	12329	18748	18748					0.10803876308273175
LLRTYFII	8	Unmodified	_LLRTYFII_					0	0	0		ENST00000358506.6_1_2:29022200-29022239:+|nuORF	ENST00000358506.6_1_2:29022200-29022239:+|nuORF	ENST00000358506.6_1_2:29022200-29022239:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.138916015625	2	519.820953	1037.62735	0.35103	0.00018247	3.1999	0.0016634	3.5509	0.0018458	519.8229304023288	42.464	0.20898	42.16	41.987	42.196	-0.30352					5	3	2	0	0	0	0.32196	1	15826	15826		6.3541	0	1	3071700			19524	7322	12273	12330	18749	18749					0.11004398242039315
LLRYCWFFKRR	11	Unmodified	_LLRYCWFFKRR_					0	0	0			REV__ENST00000544879.5_1_10:74870289-74879224:+|nuORF	REV__ENST00000544879.5_1_10:74870289-74879224:+|nuORF	MSMS	HCT116MG_D190212_S2	2	794.44140625	2	794.440098	1586.86564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.436	1	30.152	29.652	30.652	-0.28453								0	0	0	0.95925	1	11190	11190		1.4819	0	1		+		19525	13098	12274	12331	18750	18750					0.09568435552614574
LLSALLSSGV	10	Unmodified	_LLSALLSSGV_					0	0	0		nc|ENSG00000275410|P35680-3|HNF1B;nc|ENSG00000275410|P35680-4|HNF1B;nc|ENSG00000275410|P35680-2|HNF1B;ENSG00000275410|ENST00000617811|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	MSMS	HCT116MG_D190212_S2	2	480.318359375	2	480.292225	958.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.434	1	57.259	56.759	57.759	-0.17494								0	0	0	0.92607	1	22176	22176		10.074	0.6908	1				19526	6679	12275	12332	18751	18751					0.08895511245816579
LLSCPGDH	8	Unmodified	_LLSCPGDH_					0	0	0		ENST00000372067.7_1_6:43753147-43753534:+|nuORF	ENST00000372067.7_1_6:43753147-43753534:+|nuORF	ENST00000372067.7_1_6:43753147-43753534:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	841.388427734375	1	841.387264	840.379988	0.9313	0.00078358	0.5295	0.00044552	1.4608	0.0012291	841.3874402143714	46.505	0.36031	46.394	46.214	46.574	-0.11121					10	6	2	0	0	0	0.77285	1	17718	17718		14.582	1.0738	1	124510000			19527	7451	12276	12333	18752	18752					-0.046586789682237395
LLSFIWIVE	9	Unmodified	_LLSFIWIVE_					0	0	0			REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.1358253178546305|0.0196351871970747|5.85|480.0|32|2|anti-sense	REV__L1PB1_dup6616|chr8:82292382-82293007:-|1.1358253178546305|0.0196351871970747|5.85|480.0|32|2|anti-sense	MSMS	HCT116MG_D190212_S3	3	560.3286743164062	2	560.326068	1118.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.814	1	46.5	46	47	-0.31405								0	0	0	0.74436	1	17563	17563		16.942	1.0951	1		+		19528	16963	12277	12334	18753	18753					0.08300961176610144
LLSGSVLVK	9	Unmodified	_LLSGSVLVK_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.N178Tfs*6|1|0.17|ENSG00000158987|chr5:131521484-131521484|T/-|frameshift_variant;RAPGEF6|p.N386Ifs*20|1|0.21|ENSG00000158987|chr5:131504723-131504723|T/-|frameshift_variant;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.N832Ifs*17|2|0.4|ENSG00000158987|chr5:131462074-131462074|T/-|frameshift_variant;RAPGEF6|p.L1388*|1|0.25|ENSG00000158987|chr5:131431161-131431161|A/-|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MSMS	HCT116MG_D190212_S1	1	458.2959899902344	2	458.29731	914.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.044	1	53.044	52.544	53.544	0								0	0	0	0.76973	1	20304	20304		1.8442	0	1				19529	9511	12278	12335	18754	18754					0.11936118971038923
LLSGVRSRS	9	Unmodified	_LLSGVRSRS_					0	0	0		nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;nc|ENSG00000214944|Q8N1W1-2|ARHGEF28	nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	MULTI-MSMS	HCT116MG_D190212_S1	1	487.7906799316406	2	487.790715	973.566878	0.21005	0.00010246	0.1261	6.1509E-05	0.33615	0.00016397	487.79071647776175	43.472	0.98766	43.472	42.69	43.678	0					22	18	2	0	0	0	0.67781	1	16370	16370		6.7232	0.36906	1	20876000			19530	6442	12279	12336	18755	18755					0.07903680911658739
LLSKVVTILE	10	Unmodified	_LLSKVVTILE_					0	0	0			REV__ENSG00000089050|ENST00000337227|RBBP9	REV__ENSG00000089050|ENST00000337227|RBBP9	MSMS	HCT116MG_D190212_S3	3	372.2409973144531	3	372.240914	1113.70091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.536	1	53.233	52.733	53.733	-0.30305								0	0	0	0.97045	1	20264	20264		0.15932	0	1		+		19531	10965	12280	12337	18756	18756					0.14860901893871414
LLSPSQSSPSL	11	Unmodified	_LLSPSQSSPSL_					0	0	0			REV__MAST3|p.A68Cfs*73|1|0.12|ENSG00000099308|chr19:18121889-18121890|-/A|frameshift_variant	REV__MAST3|p.A68Cfs*73|1|0.12|ENSG00000099308|chr19:18121889-18121890|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	558.2977294921875	2	558.300778	1114.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.766	1	53.467	52.967	53.967	-0.29946								0	0	0	0.93552	1	20357	20357		13.906	0.39817	1		+		19532	11043	12281	12338	18757	18757					0.03429387060964473
LLSPVRQKV	9	Unmodified	_LLSPVRQKV_					0	0	0		RTN4|p.K423Nfs*32|1|0.38|ENSG00000115310|chr2:55026830-55026830|T/-|frameshift_variant	RTN4|p.K423Nfs*32|1|0.38|ENSG00000115310|chr2:55026830-55026830|T/-|frameshift_variant	RTN4|p.K423Nfs*32|1|0.38|ENSG00000115310|chr2:55026830-55026830|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	520.6543579101562	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.744	1	35.601	35.101	36.101	-0.14245								0	0	0	0.7689	1	13344	13344		4.756	0	1				19533	18132	12282	12339	18758	18758					0.13718301502285613
LLSPVRQKV	9	Unmodified	_LLSPVRQKV_					0	0	0		RTN4|p.K423Nfs*32|1|0.38|ENSG00000115310|chr2:55026830-55026830|T/-|frameshift_variant	RTN4|p.K423Nfs*32|1|0.38|ENSG00000115310|chr2:55026830-55026830|T/-|frameshift_variant	RTN4|p.K423Nfs*32|1|0.38|ENSG00000115310|chr2:55026830-55026830|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	520.3331298828125	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.788	1	35.646	35.146	36.146	-0.14245								0	0	0	0.76781	1	13362	13362		8.5933	0	1				19534	18132	12282	12339	18759	18759					0.13718301502285613
LLSRLQPN	8	Unmodified	_LLSRLQPN_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-4|MED25	REV__nc|ENSG00000104973|Q71SY5-4|MED25	MSMS	HCT116MG_D190212_S2	2	470.7825012207031	2	470.782359	939.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.557	1	37.454	36.954	37.954	-0.10318								0	0	0	0.8837	1	14082	14082		14.838	0.93222	1		+		19535	17098	12283	12340	18760	18760					0.0779718002570462
LLSRVRGGHV	10	Unmodified	_LLSRVRGGHV_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	547.3460693359375	2	547.333082	1092.65161	0.40245	0.00022028	1.0457	0.00057234	1.4481	0.00079262	547.3334953425383	21.994	0.26066	21.609	21.479	21.739	-0.38503					10	4	3	0	0	0	0.51145	2	7767	7767;7794		34.402	34.402	1	59567000	+		19536	11010	12284	12341	18761;18762	18761					0.10899051448291175
LLSTIRNAN	9	Unmodified	_LLSTIRNAN_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-3|TASOR	REV__nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S1	1	501.290771484375	2	501.290548	1000.56654	0.48376	0.00024251	-0.016414	-8.2281E-06	0.46735	0.00023428	501.2904384609821	46.257	1.87	46.257	45.295	47.165	0					85	35	3	0	0	0	0.56733	1	17549	17549		13.042	0	1	90691000	+		19537	12964	12285	12342	18763	18763					0.06628261191792717
LLSTIRNSFY	10	Unmodified	_LLSTIRNSFY_					0	0	0			REV__ENST00000230449.8_1_6:637790-693106:-|nuORF	REV__ENST00000230449.8_1_6:637790-693106:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	607.8335571289062	2	607.332413	1212.65027	0.46792	0.00028419	-0.57353	-0.00034833	-0.10561	-6.414E-05	607.8333123281225	41.132	0.20846	41.132	41.029	41.237	0					5	3	2	0	0	0	0.85662	1	15499	15499		7.2892	1.5574	1	10876000	+		19538	14545	12286	12343	18764	18764					0.0524537256885651
LLSTLFFLWLG	11	Unmodified	_LLSTLFFLWLG_					0	0	0		nc|ENSG00000080815|P49768-4|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	MULTI-MSMS	HCT116MG_D190212_S1	1	437.5923156738281	3	437.256675	1308.7482	-0.12924	-5.651E-05	1.6429	0.00071836	1.5136	0.00066185	437.591754293333	51.039	0.46503	51.039	50.781	51.246	0					11	8	2	0	0	0	0.74191	1	19516	19516		1.4551	1.0469	1	8701700			19539	9386	12287	12344	18765	18765					0.10617181164843714
LLSVLVQIPKQ	11	Unmodified	_LLSVLVQIPKQ_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MSMS	HCT116MG_D190212_S3	3	413.2663269042969	3	413.267463	1236.78056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12	1	12.055	11.555	12.555	0.055045								0	0	0	0.96121	1	3713	3713		0.45452	0.29519	1				19540	1092	12288	12345	18766	18766					0.1716396856782012
LLTASEGLVA	10	Unmodified	_LLTASEGLVA_					0	0	0		ENST00000565825.5_1_15:89647251-89647433:+|nuORF	ENST00000565825.5_1_15:89647251-89647433:+|nuORF	ENST00000565825.5_1_15:89647251-89647433:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	487.2826232910156	2	487.281857	972.549162	0.20002	9.7467E-05	0.93189	0.0004541	1.1319	0.00055156	487.28216547525	38.141	0.29802	37.84	37.691	37.989	-0.30137					8	5	2	0	0	0	0.61891	1	14145	14145		26.884	0	1	3374700			19541	8859	12289	12346	18767	18767					0.06178920866148019
LLTASHHSSA	10	Unmodified	_LLTASHHSSA_					0	0	0		ENST00000563953.5_2_16:67261036-67261779:+|nuORF	ENST00000563953.5_2_16:67261036-67261779:+|nuORF	ENST00000563953.5_2_16:67261036-67261779:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	512.2407836914062	2	512.26453	1022.51451	0.46522	0.00023831	1.6039	0.00082162	2.0691	0.0010599	512.2652876587924	45.746	0.26266	45.746	45.555	45.818	0					6	4	2	0	0	0	0.29734	1	17326	17326		9.3831	0	1	3163500			19542	8839	12290	12347	18768	18768					0.004150977780454923
LLTFTKREL	9	Unmodified	_LLTFTKREL_					0	0	0		ENST00000470811.5_1_3:156544101-156697065:+|nuORF;ENSG00000197980|ENST00000356539|LEKR1	ENST00000470811.5_1_3:156544101-156697065:+|nuORF	ENST00000470811.5_1_3:156544101-156697065:+|nuORF	MSMS	HCT116MG_D190212_S1	1	374.2283020019531	3	374.229008	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.56	1	26.56	26.06	27.06	0								0	0	0	0.76781	1	9602	9602		5.2969	1.4206	1				19543	6193	12291	12348	18769	18769					0.11014864436833705
LLTITPVT	8	Unmodified	_LLTITPVT_					0	0	0			REV__nc|ENSG00000170959|M0R2J8-2|DCDC1	REV__nc|ENSG00000170959|M0R2J8-2|DCDC1	MSMS	HCT116MG_D190212_S3	3	429.27069091796875	2	429.270761	856.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.477	1	24.393	23.893	24.893	-0.083694								0	0	0	0.8837	1	8694	8694		5.7604	0	1		+		19544	10334	12292	12349	18770	18770					0.09296741188370561
LLTKQSKKKL	10	Unmodified	_LLTKQSKKKL_					0	0	0			REV__OVGP1|p.E667Kfs*30|1|0.17|ENSG00000085465|chr1:111414503-111414503|T/-|frameshift_variant	REV__OVGP1|p.E667Kfs*30|1|0.17|ENSG00000085465|chr1:111414503-111414503|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1186.7886962890625	1	1186.78817	1185.78089	0.56145	0.00066633	0.047194	5.6009E-05	0.60865	0.00072233	1186.7883739440506	61.253	0.88446	61.108	60.893	61.777	-0.14456					21	16	2	0	0	0	0.89248	1	23768	23768		0.45834	0	1	3700000	+		19545	17378	12293	12350	18771	18771					0.19543388287706875
LLTSPNKG	8	Unmodified	_LLTSPNKG_					0	0	0		ENST00000587708.6_1_19:36237754-36237895:+|nuORF	ENST00000587708.6_1_19:36237754-36237895:+|nuORF	ENST00000587708.6_1_19:36237754-36237895:+|nuORF	MSMS	HCT116MG_D190212_S1	1	415.2415466308594	2	415.242535	828.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.467	1	41.467	40.967	41.967	0								0	0	0	0.8837	1	15615	15615		5.2307	2.6532	1				19546	9009	12294	12351	18772	18772					0.049421133517171256
LLTSVTLLSIY	11	Unmodified	_LLTSVTLLSIY_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1;SLC38A1|p.F232Sfs*2|1|0.39|ENSG00000111371|chr12:46204542-46204542|A/-|frameshift_variant;SLC38A1|p.K136Sfs*14|1|0.29|ENSG00000111371|chr12:46207603-46207603|T/-|frameshift_variant	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MSMS	HCT116MG_D190212_S1	1	408.24932861328125	3	408.247957	1221.72204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.798	1	38.798	38.298	39.298	0								0	0	0	0.95621	1	14536	14536		3.0723	0.98626	1				19547	2291	12295	12352	18773	18773					0.12004867202745118
LLTSVTLLSIY	11	Unmodified	_LLTSVTLLSIY_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1;SLC38A1|p.F232Sfs*2|1|0.39|ENSG00000111371|chr12:46204542-46204542|A/-|frameshift_variant;SLC38A1|p.K136Sfs*14|1|0.29|ENSG00000111371|chr12:46207603-46207603|T/-|frameshift_variant	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MSMS	HCT116MG_D190212_S4	4	408.2492370605469	3	408.247957	1221.72204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.169	1	33.783	33.283	34.283	-0.38558								0	0	0	0.95621	1	12466	12466		3.0723	0.077021	1				19548	2291	12295	12352	18774	18774					0.12004867202745118
LLVAELTA	8	Unmodified	_LLVAELTA_					0	0	0		ENST00000370620.5_1_X:135749294-135749660:-|nuORF	ENST00000370620.5_1_X:135749294-135749660:-|nuORF	ENST00000370620.5_1_X:135749294-135749660:-|nuORF	MSMS	HCT116MG_D190212_S1	1	415.25323486328125	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.257	1	39.257	38.757	39.757	0								0	0	0	0.8837	1	14721	14721		2.8892	0	1				19549	7429	12296	12353	18775	18775					0.07456168154260467
LLVAPALLAPA	11	Unmodified	_LLVAPALLAPA_					0	0	0			REV__EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	REV__EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	524.2772216796875	2	524.841885	1047.66922	0.32562	0.0001709	-1.5642	-0.00082098	-1.2386	-0.00065008	525.3430341869484	56.979	0.20737	56.979	56.841	57.049	0					5	3	2	0	0	0	0.36296	1	21869	21869		6.7232	3.1267	1	1541500	+		19550	10782	12297	12354	18776	18776					0.14728953930534772
LLVGDRSQ	8	Unmodified	_LLVGDRSQ_					0	0	0			REV__ENST00000517621.5_1_11:44941433-44948237:+|nuORF	REV__ENST00000517621.5_1_11:44941433-44948237:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	444.17095947265625	2	444.250892	886.48723	-0.053702	-2.3857E-05	0.83863	0.00037256	0.78493	0.0003487	444.2512006446686	25.383	0.25994	25.383	25.249	25.509	0					9	4	3	0	0	0	0.31097	1	9123	9123		3.9444	0	1	9652400	+		19551	12756	12298	12355	18777	18777					0.039446142376732496
LLVGFSWSY	9	Unmodified	_LLVGFSWSY_					0	0	0			REV__LTK|p.D705Y|1|0.16|ENSG00000062524|chr15:41504780-41504780|C/A|missense_variant	REV__LTK|p.D705Y|1|0.16|ENSG00000062524|chr15:41504780-41504780|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	536.25146484375	2	536.279118	1070.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.035	1	35.735	35.235	36.235	-0.30042								0	0	0	0.71969	1	13301	13301		18.135	2.3668	1		+		19552	16993	12299	12356	18778	18778					0.011232420743453986
LLVIKRKPPK	10	Unmodified	_LLVIKRKPPK_					0	0	0			REV__ENST00000544662.1_1_12:132414461-132416977:+|nuORF	REV__ENST00000544662.1_1_12:132414461-132416977:+|nuORF	MSMS	HCT116MG_D190212_S3	3	596.4163818359375	2	596.418626	1190.8227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.54	1	58.271	57.771	58.771	-0.26932								0	0	0	0.97116	1	22272	22272		0	0	1		+		19553	13565	12300	12357	18779	18779					0.2349198876686387
LLVITMKYV	9	Unmodified	_LLVITMKYV_					0	0	0		ENST00000536503.5_1_12:27181995-27182121:+|nuORF	ENST00000536503.5_1_12:27181995-27182121:+|nuORF	ENST00000536503.5_1_12:27181995-27182121:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	540.3297729492188	2	540.330296	1078.64604	0.43969	0.00023758	-0.16418	-8.871E-05	0.27551	0.00014887	540.3299541026364	54.713	0.41812	54.417	54.19	54.609	-0.29587					10	7	2	0	0	0	0.71345	1	20761	20761		4.3292	0	1	1690300			19554	8664	12301	12358	18780	18780					0.1098619182157563
LLVITMKYV	9	Unmodified	_LLVITMKYV_					0	0	0		ENST00000536503.5_1_12:27181995-27182121:+|nuORF	ENST00000536503.5_1_12:27181995-27182121:+|nuORF	ENST00000536503.5_1_12:27181995-27182121:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	540.330296	1078.64604	0.48078	0.00025978	-0.36418	-0.00019678	0.1166	6.3003E-05	540.3299959668767	54.383	1.228	54.194	53.739	54.967	-0.1894	-0.13475	-0.00013359	NaN	4.3292	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27289000			19555	8664	12301	12358							0.1098619182157563
LLVITMKYV	9	Unmodified	_LLVITMKYV_					0	0	0		ENST00000536503.5_1_12:27181995-27182121:+|nuORF	ENST00000536503.5_1_12:27181995-27182121:+|nuORF	ENST00000536503.5_1_12:27181995-27182121:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	540.330296	1078.64604	0.53796	0.00029068	-0.23829	-0.00012875	0.29967	0.00016192	540.330044042075	54.698	1.1467	54.374	53.879	55.026	-0.32349	0.046144	2.4547E-06	NaN	4.3292	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8836300			19556	8664	12301	12358							0.1098619182157563
LLVKLLALRLK	11	Unmodified	_LLVKLLALRLK_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MSMS	HCT116MG_D190212_S2	2	640.4641723632812	2	640.463033	1278.91151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.178	1	58.008	57.508	58.508	-0.1703								0	0	0	0.95954	1	22478	22478		1.3295	0	1		+		19557	13952	12302	12359	18781	18781					0.2832140400653316
LLVLATVP	8	Unmodified	_LLVLATVP_					0	0	0		ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	MSMS	HCT116MG_D190212_S1	1	413.2743835449219	2	413.275847	824.537141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.452	1	45.452	44.952	45.952	0								0	0	0	0.8837	1	17221	17221		2.8892	0	1				19558	4907	12303	12360	18782	18782					0.1178534891361096
LLVLFFTRRVL	11	Unmodified	_LLVLFFTRRVL_					0	0	0			REV__ENST00000403097.5_1_7:50860326-50860620:-|nuORF	REV__ENST00000403097.5_1_7:50860326-50860620:-|nuORF	MSMS	HCT116MG_D190212_S2	2	688.9403076171875	2	688.942465	1375.87038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.404	1	51.226	50.726	51.726	-0.17868								0	0	0	0.95521	1	19722	19722		3.5965	0.31518	1		+		19559	15398	12304	12361	18783	18783					0.1974764296705871
LLVLHIFP	8	Unmodified	_LLVLHIFP_					0	0	0		ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	MSMS	HCT116MG_D190212_S3	3	476.3066711425781	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.17	1	47.854	47.354	48.354	-0.31596								0	0	0	0.8837	1	18110	18110		6.3541	3.4649	1				19560	5039	12305	12362	18784	18784					0.11805030558889484
LLVLKRSFVP	10	Unmodified	_LLVLKRSFVP_					0	0	0			REV__ENST00000037243.6_1_16:75611466-75611547:+|nuORF	REV__ENST00000037243.6_1_16:75611466-75611547:+|nuORF	MSMS	HCT116MG_D190212_S3	3	586.3842163085938	2	586.381709	1170.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.418	1	47.103	46.603	47.603	-0.31525								0	0	0	0.96291	1	17807	17807		1.8442	0	1		+		19561	14485	12306	12363	18785	18785					0.1703202060455169
LLVLLLRNLSD	11	Unmodified	_LLVLLLRNLSD_					0	0	0		ENST00000209875.8_1_12:54633972-54634116:-|nuORF	ENST00000209875.8_1_12:54633972-54634116:-|nuORF	ENST00000209875.8_1_12:54633972-54634116:-|nuORF	MSMS	HCT116MG_D190212_S3	3	634.8983154296875	2	634.900463	1267.78637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.099	1	48.783	48.283	49.283	-0.31596								0	0	0	0.95954	1	18482	18482		1.3295	0	1				19562	6729	12307	12364	18786	18786					0.16319067079530214
LLVLLVHHWLL	11	Unmodified	_LLVLLVHHWLL_					0	0	0			REV__ENST00000440623.5_1_2:182781531-182781621:+|nuORF	REV__ENST00000440623.5_1_2:182781531-182781621:+|nuORF	MSMS	HCT116MG_D190212_S2	2	678.4351196289062	2	678.431733	1354.84891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.9	1	58.734	58.234	59.234	-0.1653								0	0	0	0.96141	1	22774	22774		0.35063	0.35063	1		+		19563	15643	12308	12365	18787	18787					0.18568257938363786
LLVLLVLPDLP	11	Unmodified	_LLVLLVLPDLP_					0	0	0			REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	402.269287109375	3	402.268692	1203.78425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.762	1	34.604	34.104	35.104	-0.15834								0	0	0	0.9619	1	12944	12944		0.094841	0.094841	1		+		19564	10227	12309	12366	18788	18788					0.19050638341695958
LLVLTLLMY	9	Unmodified	_LLVLTLLMY_					0	0	0		PCDHA7|p.L717M|1|0.2|ENSG00000204963|chr5:140836532-140836532|C/A|missense_variant	PCDHA7|p.L717M|1|0.2|ENSG00000204963|chr5:140836532-140836532|C/A|missense_variant	PCDHA7|p.L717M|1|0.2|ENSG00000204963|chr5:140836532-140836532|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	539.8326416015625	2	539.832672	1077.65079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.134	1	50.779	50.279	51.279	-0.35483								0	0	0	0.7694	1	19021	19021		2.3027	0.4585	1				19565	9732	12310	12367	18789	18789					0.11507075964345859
LLVNSLFAGM	10	Unmodified	_LLVNSLFAGM_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000171316|Q9P2D1-4|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	532.7932739257812	2	532.794078	1063.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.781	1	50.609	50.109	51.109	-0.1719								0	0	0	0.57811	1	19468	19468		43.772	3.8227	1				19566	430	12311	12368	18790	18790					0.044358577480352324
LLVNYEQGP	9	Unmodified	_LLVNYEQGP_					0	0	0			REV__nc|ENSG00000041982|P24821-4|TNC	REV__nc|ENSG00000041982|P24821-4|TNC	MSMS	HCT116MG_D190212_S1	1	516.7696533203125	2	516.771657	1031.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.094	1	18.094	17.594	18.594	0								0	0	0	0.7676	1	6199	6199		9.3474	0.60203	1		+		19567	10592	12312	12369	18791	18791					0.014257502063401262
LLVPPPLPPP	10	Unmodified	_LLVPPPLPPP_					0	0	0			REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	MSMS	HCT116MG_D190212_S4	4	520.3599243164062	2	520.331153	1038.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.927	1	35.541	35.041	36.041	-0.38606								0	0	0	0.93576	1	13128	13128		7.9102	3.1541	1		+		19568	15340	12313	12370	18792	18792					0.12997568901823797
LLVQKDRKMVP	11	Unmodified	_LLVQKDRKMVP_					0	0	0			REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MSMS	HCT116MG_D190212_S4	4	663.9005126953125	2	663.89994	1325.78533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.203	1	56.903	56.403	57.403	-0.3004								0	0	0	0.95113	1	21465	21465		5.7319	0	1		+		19569	12265	12314	12371	18793	18793					0.13546529438940524
LLVRPWVSW	9	Unmodified	_LLVRPWVSW_					0	0	0		ENST00000357997.9_1_12:133303205-133303334:-|nuORF	ENST00000357997.9_1_12:133303205-133303334:-|nuORF	ENST00000357997.9_1_12:133303205-133303334:-|nuORF	MSMS	HCT116MG_D190212_S1	1	577.8983764648438	2	578.337301	1154.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.192	1	31.192	30.692	31.692	0								0	0	0	0.76967	1	11468	11468		2.0598	0	1				19570	7314	12315	12372	18794	18794					0.08890605364877047
LLVRSLRL	8	Unmodified	_LLVRSLRL_					0	0	0		ENST00000219271.3_1_16:58059493-58060384:+|nuORF	ENST00000219271.3_1_16:58059493-58060384:+|nuORF	ENST00000219271.3_1_16:58059493-58060384:+|nuORF	MSMS	HCT116MG_D190212_S2	2	485.3081970214844	2	485.332019	968.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.153	1	55.971	55.471	56.471	-0.18261								0	0	0	0.8837	1	21662	21662		5.7604	0	1				19571	6748	12316	12373	18795	18795					0.1639062271046896
LLVSAPPP	8	Unmodified	_LLVSAPPP_					0	0	0			REV__ENSG00000160959|ENST00000292524|LRRC14	REV__ENSG00000160959|ENST00000292524|LRRC14	MULTI-MSMS	HCT116MG_D190212_S1	1	397.24420166015625	2	397.244547	792.47454	0.0059026	2.3448E-06	-0.15633	-6.2101E-05	-0.15043	-5.9757E-05	397.2443834771606	21.041	0.21528	21.041	20.904	21.12	0					5	3	2	0	0	0	0.66848	1	7412	7412		26.341	0	1	4118100	+		19572	12848	12317	12374	18796	18796					0.07000202845415515
LLVSAPPP	8	Unmodified	_LLVSAPPP_					0	0	0			REV__ENSG00000160959|ENST00000292524|LRRC14	REV__ENSG00000160959|ENST00000292524|LRRC14	MULTI-MSMS	HCT116MG_D190212_S2	2	397.24432373046875	2	397.244547	792.47454	-0.10472	-4.1601E-05	-0.005182	-2.0585E-06	-0.10991	-4.3659E-05	397.24445258077947	21.734	0.62438	21.349	21.167	21.792	-0.38503					28	11	4	0	0	0	0.2535	1	7645	7645		63.394	10.701	1	638860000	+		19573	12848	12317	12374	18797	18797					0.07000202845415515
LLVSAPPP	8	Unmodified	_LLVSAPPP_					0	0	0			REV__ENSG00000160959|ENST00000292524|LRRC14	REV__ENSG00000160959|ENST00000292524|LRRC14	MULTI-MSMS	HCT116MG_D190212_S2	2	793.4822998046875	1	793.481817	792.47454	0.78496	0.00062285	-0.00045772	-3.6319E-07	0.7845	0.00062249	793.4816667969475	21.731	0.3638	21.346	21.167	21.531	-0.38503					14	6	3	0	0	0	0.2535	1	7665	7665		63.394	10.701	1	98231000	+		19574	12848	12317	12374	18798	18798					0.07000202845415515
LLVSAPPP	8	Unmodified	_LLVSAPPP_					0	0	0			REV__ENSG00000160959|ENST00000292524|LRRC14	REV__ENSG00000160959|ENST00000292524|LRRC14	MULTI-MSMS	HCT116MG_D190212_S3	3	397.2445068359375	2	397.244547	792.47454	-0.16417	-6.5214E-05	0.1231	4.8901E-05	-0.041065	-1.6313E-05	397.244441727135	20.758	0.20822	20.792	20.662	20.871	0.034473					6	3	2	0	0	0	0.5791	1	7206	7206		34.187	0	1	3992300	+		19575	12848	12317	12374	18799	18799					0.07000202845415515
LLVSAPPP	8	Unmodified	_LLVSAPPP_					0	0	0			REV__ENSG00000160959|ENST00000292524|LRRC14	REV__ENSG00000160959|ENST00000292524|LRRC14	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	397.244547	792.47454	0.0059026	2.3448E-06	-0.15633	-6.2101E-05	-0.15043	-5.9757E-05	397.2443834771606	21.041	0.21528	21.041	20.904	21.12	0	-0.15413	-0.00010573	NaN	63.394	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4118100	+		19576	12848	12317	12374							0.07000202845415515
LLVSAPPP	8	Unmodified	_LLVSAPPP_					0	0	0			REV__ENSG00000160959|ENST00000292524|LRRC14	REV__ENSG00000160959|ENST00000292524|LRRC14	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	397.244547	792.47454	-0.10472	-4.1601E-05	-0.005182	-2.0585E-06	-0.10991	-4.3659E-05	397.24445258077947	21.734	0.62438	21.349	21.167	21.792	-0.38503	0.15413	1.4359E-05	NaN	63.394	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	638860000	+		19577	12848	12317	12374							0.07000202845415515
LLVSGGLF	8	Unmodified	_LLVSGGLF_					0	0	0			REV__ENST00000461013.5_1_5:131719758-131729961:+|nuORF	REV__ENST00000461013.5_1_5:131719758-131729961:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	403.2445983886719	2	403.244547	804.47454	0.1351	5.4477E-05	-0.39171	-0.00015796	-0.25661	-0.00010348	403.2443296753874	44.593	0.31433	44.508	44.325	44.639	-0.084797					8	5	2	0	0	0	0.29313	1	16965	16965		59.795	0	1	20949000	+		19578	14067	12318	12375	18800	18800					0.0644820284543357
LLVSGGLF	8	Unmodified	_LLVSGGLF_					0	0	0			REV__ENST00000461013.5_1_5:131719758-131729961:+|nuORF	REV__ENST00000461013.5_1_5:131719758-131729961:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	402.8840637207031	2	403.244547	804.47454	0.1351	5.4477E-05	-0.39171	-0.00015796	-0.25661	-0.00010348	403.2443296753874	44.593	0.31433	44.508	44.325	44.639	-0.084797					8	5	2	0	0	0	0.15282	1	16949	16949		70.865	0	1	20949000	+		19579	14067	12318	12375	18801	18801					0.0644820284543357
LLVVKLLLLRP	11	Unmodified	_LLVVKLLLLRP_					0	0	0		ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	MSMS	HCT116MG_D190212_S3	3	426.3070983886719	3	426.307481	1275.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.738	1	34.44	33.94	34.94	-0.29707								0	0	0	0.9619	1	12797	12797		0.094841	0.011491	1				19580	8788	12319	12376	18802	18802					0.27370001632266394
LLVVYPWTQR	10	Unmodified	_LLVVYPWTQR_					0	0	0		CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000196565|ENST00000336906|HBG2;HBB|p.F42L|1|0.47|ENSG00000244734|chr11:5226766-5226766|G/T|missense_variant;ENSG00000213931|ENST00000396895|HBE1;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09	CON__P02070;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	CON__P02070	MULTI-MSMS	HCT116MG_D190212_S1	1	637.8668823242188	2	637.866423	1273.71829	0.80553	0.00051382	1.279	0.00081583	2.0845	0.0013296	637.8663378203423	54.001	0.25476	54.001	53.873	54.128	0					7	4	2	0	0	0	0.066546	1	20722	20722		80.676	63.563	1	32891000		+	19581	546;6480	12320	12377	18803	18803					0.09238242219498716
LLVVYPWTQR	10	Unmodified	_LLVVYPWTQR_					0	0	0		CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000196565|ENST00000336906|HBG2;HBB|p.F42L|1|0.47|ENSG00000244734|chr11:5226766-5226766|G/T|missense_variant;ENSG00000213931|ENST00000396895|HBE1;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09	CON__P02070;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	CON__P02070	MULTI-MSMS	HCT116MG_D190212_S2	2	637.8665161132812	2	637.866423	1273.71829	0.46683	0.00029778	-0.32143	-0.00020503	0.1454	9.2746E-05	637.8659467398263	54.242	0.30832	54.052	53.893	54.201	-0.1894					12	5	4	0	0	0	0.025427	1	20894	20894		110.55	90.138	1	23936000		+	19582	546;6480	12320	12377	18804	18804					0.09238242219498716
LLVVYPWTQR	10	Unmodified	_LLVVYPWTQR_					0	0	0		CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000196565|ENST00000336906|HBG2;HBB|p.F42L|1|0.47|ENSG00000244734|chr11:5226766-5226766|G/T|missense_variant;ENSG00000213931|ENST00000396895|HBE1;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09	CON__P02070;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	CON__P02070	MSMS	HCT116MG_D190212_S3	3	637.8667602539062	2	637.866423	1273.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.36	1	54.064	53.564	54.564	-0.29587								0	0	0	0.00061719	1	20596	20596		145.13	85.056	1			+	19583	546;6480	12320	12377	18805	18805					0.09238242219498716
LLVVYPWTQR	10	Unmodified	_LLVVYPWTQR_					0	0	0		CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000196565|ENST00000336906|HBG2;HBB|p.F42L|1|0.47|ENSG00000244734|chr11:5226766-5226766|G/T|missense_variant;ENSG00000213931|ENST00000396895|HBE1;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09	CON__P02070;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	CON__P02070	MULTI-MSMS	HCT116MG_D190212_S4	4	637.8668212890625	2	637.866423	1273.71829	0.52101	0.00033234	-0.10854	-6.9232E-05	0.41248	0.0002631	637.8663128560918	54.385	0.83371	54.062	53.723	54.557	-0.32349					27	15	4	0	0	0	0.014564	1	20324	20324		133.05	105.42	1	25991000		+	19584	546;6480	12320	12377	18806	18806					0.09238242219498716
LLVYSRLFS	9	Unmodified	_LLVYSRLFS_					0	0	0			REV__ENST00000541170.7_1_7:139107090-139107201:+|nuORF	REV__ENST00000541170.7_1_7:139107090-139107201:+|nuORF	MSMS	HCT116MG_D190212_S1	1	549.3228759765625	2	549.321317	1096.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.471	1	31.471	30.971	31.971	0								0	0	0	0.768	1	11580	11580		7.9102	0	1		+		19585	16369	12321	12378	18807	18807					0.08363192891079052
LLWAIHHWKKI	11	Unmodified	_LLWAIHHWKKI_					0	0	0		nc|ENSG00000121749|Q8TC07|TBC1D15	nc|ENSG00000121749|Q8TC07|TBC1D15	nc|ENSG00000121749|Q8TC07|TBC1D15	MULTI-SECPEP	HCT116MG_D190212_S1	1	481.6185302734375	3	482.290713	1443.85031	0.24189	0.00011666	0.66245	0.00031949	0.90435	0.00043616	482.29101071128224	52.547	1.2356	52.547	51.968	53.204	0					48	23	3	0	0	0	0.36631	1	19954	19954		0.094841	0.094841	1	20124000			19586	9440	12322	12379	18808	18808					0.14613892027091424
LLWGRRLV	8	Unmodified	_LLWGRRLV_					0	0	0		ENST00000496925.5_1_3:184024263-184025148:+|nuORF	ENST00000496925.5_1_3:184024263-184025148:+|nuORF	ENST00000496925.5_1_3:184024263-184025148:+|nuORF	MSMS	HCT116MG_D190212_S3	3	506.82373046875	2	506.824361	1011.63417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.788	1	45.477	44.977	45.977	-0.31094								0	0	0	0.77419	1	17154	17154		24.674	6.5275	1				19587	8394	12323	12380	18809	18809					0.128817559132699
LLWKKAKTYIP	11	Unmodified	_LLWKKAKTYIP_					0	0	0			REV__ARSJ|p.N431Kfs*53|1|0.24|ENSG00000180801|chr4:113902781-113902782|-/T|frameshift_variant	REV__ARSJ|p.N431Kfs*53|1|0.24|ENSG00000180801|chr4:113902781-113902782|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	454.6181335449219	3	454.283224	1359.82784	0.2464	0.00011193	0.90956	0.0004132	1.156	0.00052513	454.2836508845617	51.6	1.2957	51.249	50.424	51.72	-0.35028					59	24	4	0	0	0	0.74191	1	19107	19107		0.50596	0.50596	1	7648900	+		19588	9989	12324	12381	18810	18810					0.1623224783884325
LLWKKKVKL	9	Unmodified	_LLWKKKVKL_					0	0	0			REV__ENSG00000215906|ENST00000426928|LACTBL1	REV__ENSG00000215906|ENST00000426928|LACTBL1	MSMS	HCT116MG_D190212_S2	2	578.7869873046875	2	578.402444	1154.79034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.017	1	45.915	45.415	46.415	-0.1014								0	0	0	0.77008	1	17516	17516		0.6015	0	1		+		19589	14285	12325	12382	18811	18811					0.21913201363872759
LLWLLNHIRV	10	Unmodified	_LLWLLNHIRV_					0	0	0		ANO8|p.T315Rfs*45|1|0.61|ENSG00000074855|chr19:17330879-17330879|C/-|frameshift_variant;ANO8|p.L363Cfs*24|1|0.57|ENSG00000074855|chr19:17330411-17330411|G/-|frameshift_variant;nc|ENSG00000074855|Q9HCE9-2|ANO8;ENSG00000074855|ENST00000159087|ANO8	ANO8|p.T315Rfs*45|1|0.61|ENSG00000074855|chr19:17330879-17330879|C/-|frameshift_variant	ANO8|p.T315Rfs*45|1|0.61|ENSG00000074855|chr19:17330879-17330879|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	638.8982543945312	2	638.898057	1275.78156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.649	1	61.395	60.895	61.895	-0.25457								0	0	0	0.96377	1	23263	23263		1.6526	0.17072	1				19590	146	12326	12383	18812	18812					0.15470227727382735
LLWLYLWLLWP	11	Unmodified	_LLWLYLWLLWP_					0	0	0		ENST00000257940.6_1_12:56515445-56515574:+|nuORF	REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	MSMS	HCT116MG_D190212_S2	2	506.334716796875	3	505.963603	1514.86898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.871	1	49.707	49.207	50.207	-0.16369								0	0	0	0.94924	1	19100	19100		3.0723	1.6171	1				19591	14613	12327	12384	18813	18813					0.13214008878298955
LLWRVLWF	8	Unmodified	_LLWRVLWF_					0	0	0			REV__nc|ENSG00000100258|Q9BU23-3|LMF2	REV__nc|ENSG00000100258|Q9BU23-3|LMF2	MSMS	HCT116MG_D190212_S2	2	566.8383178710938	2	566.836937	1131.65932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.204	1	54.015	53.515	54.515	-0.1894								0	0	0	0.8837	1	20863	20863		11.114	5.8838	1		+		19592	11072	12328	12385	18814	18814					0.09875810715834632
LLWVLSRGHR	10	Unmodified	_LLWVLSRGHR_					0	0	0		sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	MULTI-MSMS	HCT116MG_D190212_S2	2	412.9154968261719	3	412.915646	1235.72511	-0.092468	-3.8181E-05	-0.1138	-4.6989E-05	-0.20627	-8.517E-05	412.91547308068783	27.918	0.20539	27.576	27.449	27.655	-0.34201					9	3	3	0	0	0	0.75427	1	10188	10188		9.544	0	1	24701000			19593	18204	12329	12386	18815	18815					0.11667599890733982
LLYDQFPI	8	Unmodified	_LLYDQFPI_					0	0	0			REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1	REV__tr|U7T3F3|U7T3F3_FUSNUTwo-componentsystem,responseregulatorYesNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00412PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	505.1046142578125	2	504.773668	1007.53278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.384	1	42.009	41.509	42.509	-0.37565								0	0	0	0.67883	1	15576	15576		32.305	1.6689	1		+		19594	17946	12330	12387	18816	18816					0.029318397000452023
LLYESPERY	9	Unmodified	_LLYESPERY_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	585.2958984375	2	585.295496	1168.57644	0.41605	0.00024351	0.27939	0.00016353	0.69545	0.00040704	585.2955317935547	37.206	0.41285	37.103	36.871	37.284	-0.10318					14	7	3	0	0	0	0.047849	1	13941	13941		75.761	21.928	1	40647000			19595	5006	12331	12388	18817	18817					-0.001105955934690428
LLYFEGQEKAH	11	Unmodified	_LLYFEGQEKAH_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;ENST00000480609.1_1_13:111158832-111160640:+|nuORF	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MSMS	HCT116MG_D190212_S2	2	667.8392944335938	2	667.840602	1333.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.622	1	31.373	30.873	31.873	-0.24883								0	0	0	0.9387	1	11672	11672		12.241	2.8575	1				19596	3311	12332	12389	18818	18818					0.013164537349666716
LLYGVPVSL	9	Unmodified	_LLYGVPVSL_					0	0	0		ENST00000468718.5_1_1:46860020-46871294:+|nuORF;ENST00000493735.5_1_1:46860047-46871467:+|nuORF;ENSG00000117480|ENST00000243167|FAAH	ENST00000468718.5_1_1:46860020-46871294:+|nuORF	ENST00000468718.5_1_1:46860020-46871294:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	960.576416015625	1	960.576445	959.569169	0.70415	0.00067639	-0.26728	-0.00025675	0.43687	0.00041964	960.5759565335411	57.22	0.25968	57.041	56.895	57.155	-0.17904					6	4	2	0	0	0	0.12335	1	22115	22115		53.576	15.424	1	7269200			19597	2577	12333	12390	18819	18819					0.087767165967648
LLYLKQML	8	Unmodified	_LLYLKQML_					0	0	0			REV__nc|ENSG00000172752|A8TX70|COL6A5	REV__nc|ENSG00000172752|A8TX70|COL6A5	MULTI-MSMS	HCT116MG_D190212_S1	1	511.2818908691406	2	511.309364	1020.60417	0.46612	0.00023833	-0.7015	-0.00035868	-0.23538	-0.00012035	511.3089305345121	45.759	0.73193	45.759	45.347	46.079	0					28	13	3	0	0	0	0.84759	1	17352	17352		5.7604	0	1	16881000	+		19598	13401	12334	12391	18820	18820					0.09469636133053427
LLYQEGAKMAV	11	Unmodified	_LLYQEGAKMAV_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	611.8282470703125	2	611.828649	1221.64274	0.63186	0.00038659	-0.78328	-0.00047923	-0.15141	-9.264E-05	611.8280103821609	41.525	0.3072	41.457	41.293	41.601	-0.068199					11	5	3	0	0	0	0.27657	1	15703	15703		66.683	30.177	1	76808000			19599	5303	12335	12392	18821	18821					0.04078896976920987
LLYQEGAKMAV	11	Unmodified	_LLYQEGAKMAV_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	611.828649	1221.64274	0.87092	0.00053285	0.028232	1.7273E-05	0.89915	0.00055013	611.8286341981667	41.524	0.20835	41.524	41.393	41.602	0	0.033325	0.00031103	NaN	66.683	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15203000			19600	5303	12335	12392							0.04078896976920987
LLYQEHWP	8	Unmodified	_LLYQEHWP_					0	0	0			REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	MSMS	HCT116MG_D190212_S3	3	543.273681640625	2	543.274367	1084.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.346	1	56.062	55.562	56.562	-0.28367								0	0	0	0.8837	1	21389	21389		6.3541	0	1		+		19601	13208	12336	12393	18822	18822					-0.004705262112111086
LLYQRTTI	8	Unmodified	_LLYQRTTI_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	HCT116MG_D190212_S2	2	503.77679443359375	2	504.297842	1006.58113	0.45092	0.0002274	0.29903	0.0001508	0.74995	0.0003782	504.29792481812035	55.131	0.30453	54.943	54.816	55.121	-0.18797					6	5	2	0	0	0	0.30262	1	21299	21299		13.508	0	1	50195000			19602	3817	12337	12394	18823	18823					0.0781033333993264
LLYSACFWWL	10	Unmodified	_LLYSACFWWL_					0	0	0		ENSG00000101850|ENST00000467482|GPR143	ENSG00000101850|ENST00000467482|GPR143	ENSG00000101850|ENST00000467482|GPR143	MSMS	HCT116MG_D190212_S1	1	651.3209838867188	2	651.323002	1300.63145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.249	1	33.249	32.749	33.749	0								0	0	0	0.93854	1	12298	12298		7.2892	1.5574	1				19603	1809	12338	12395	18824	18824					-0.006838803265736715
LMAEHSAAWY	10	Unmodified	_LMAEHSAAWY_					0	0	0		ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	589.338134765625	2	589.768591	1177.52263	0.85079	0.00050177	-0.34705	-0.00020468	0.50374	0.00029709	589.7687926127549	43.814	0.25694	43.736	43.505	43.762	-0.078373					6	4	2	0	0	0	0.30812	1	16567	16567		7.2892	2.0586	1	11331000			19604	5053	12339	12396	18825	18825					-0.05903091296841012
LMAEMGVHSV	10	Unmodified	_LMAEMGVHSV_					0	0	0		ENST00000358711.7_1_20:62571331-62572425:-|nuORF;nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1	ENST00000358711.7_1_20:62571331-62572425:-|nuORF	ENST00000358711.7_1_20:62571331-62572425:-|nuORF	MSMS	HCT116MG_D190212_S2	2	537.2594604492188	2	537.259545	1072.50454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.823	1	38.738	38.238	39.238	-0.084618								0	0	0	0.087844	1	14592	14592		85.272	45.315	1				19605	6221	12340	12397	18826	18826					-0.028815495431899762
LMANIILFRST	11	Unmodified	_LMANIILFRST_					0	0	0			REV__ENSG00000103429|ENST00000261658|BFAR	REV__ENSG00000103429|ENST00000261658|BFAR	MSMS	HCT116MG_D190212_S1	1	639.8668212890625	2	639.865566	1277.71658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.061	1	51.061	50.561	51.561	0								0	0	0	0.95636	1	19499	19499		2.9952	0.49676	1		+		19606	11190	12341	12398	18827	18827					0.08882865139253227
LMCMLIFSIL	10	Unmodified	_LMCMLIFSIL_					0	0	0		ENSG00000176540|ENST00000319813|OR4C5	ENSG00000176540|ENST00000319813|OR4C5	ENSG00000176540|ENST00000319813|OR4C5	MULTI-SECPEP	HCT116MG_D190212_S3	3	592.35400390625	2	592.318017	1182.62148	0.31305	0.00018543	-0.4983	-0.00029515	-0.18525	-0.00010973	592.3176919156263	36.19	0.72306	35.89	35.527	36.25	-0.30042					16	13	2	0	0	0	0.30991	1	13463	13463		3.9444	3.9444	1	11890000			19607	5423	12342	12399	18828	18828					0.03747472352188197
LMDHTIPEV	9	Unmodified	_LMDHTIPEV_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	HCT116MG_D190212_S3	3	528.266357421875	2	527.765517	1053.51648	0.19528	0.00010306	-0.71392	-0.00037678	-0.51864	-0.00027372	527.7653049571559	41.548	0.12228	41.246	41.22	41.342	-0.30257					12	7	2	0	0	0	0.013464	2	15477	15471;15477		104.8	30.376	1	12643000			19608	3491	12343	12400	18829;18830	18830					-0.008136095283589384
LMDLVSGIPAT	11	Unmodified	_LMDLVSGIPAT_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MSMS	HCT116MG_D190212_S3	3	558.8009033203125	2	558.8021	1115.58965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.501	1	56.217	55.717	56.717	-0.28367								0	0	0	0.9387	1	21451	21451		12.241	2.8575	1				19609	6104	12344	12401	18831	18831					0.03647519194259985
LMDWERQV	8	Unmodified	_LMDWERQV_					0	0	0			REV__TEX13B|p.R143W|1|0.3|ENSG00000170925|chrX:107981701-107981701|G/A|missense_variant	REV__TEX13B|p.R143W|1|0.3|ENSG00000170925|chrX:107981701-107981701|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	359.5110168457031	3	359.511298	1075.51206	-0.28304	-0.00010176	-0.21472	-7.7194E-05	-0.49776	-0.00017895	359.5111834638592	32.527	0.26069	32.297	32.15	32.411	-0.23009					9	4	3	0	0	0	0.78216	1	12058	12058		10.074	0	1	14835000	+		19610	17626	12345	12402	18832	18832					-0.02267073951270504
LMESEMLP	8	Unmodified	_LMESEMLP_					0	0	0			REV__ENST00000577161.5_1_17:78519375-78883449:+|nuORF	REV__ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MSMS	HCT116MG_D190212_S4	4	475.20758056640625	2	475.222097	948.42964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.325	1	38.944	38.444	39.444	-0.38055								0	0	0	0.8837	1	14445	14445		6.3541	0	1		+		19611	16610	12346	12403	18833	18833					-0.046637320744252975
LMEVEFMSGTA	11	Unmodified	_LMEVEFMSGTA_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;ENST00000465525.6_1_1:29647190-29652170:+|nuORF;TRNAU1AP-PTPRU|3|fusion;TRNAU1AP-PTPRU|2|fusion;TRNAU1AP-PTPRU|1|fusion	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	HCT116MG_D190212_S2	2	607.7759399414062	2	607.775225	1213.5359	0.78838	0.00047915	1.0721	0.00065159	1.8605	0.0011307	607.7756722158804	22.358	0.31094	21.973	21.843	22.154	-0.3852					7	5	2	0	0	0	0.73696	1	7944	7944		8.1555	0.24537	1	12845000			19612	1110	12347	12404	18834	18834					-0.0623302129977219
LMEVEFMSGTA	11	Unmodified	_LMEVEFMSGTA_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;ENST00000465525.6_1_1:29647190-29652170:+|nuORF;TRNAU1AP-PTPRU|3|fusion;TRNAU1AP-PTPRU|2|fusion;TRNAU1AP-PTPRU|1|fusion	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MATCH	HCT116MG_D190212_S1	1		2	607.775225	1213.5359	0.48478	0.00029464	1.2131	0.00073728	1.6979	0.0010319	607.7755478317542	21.932	0.20864	21.932	21.75	21.959	0	-0.020126	0.00012839	NaN	8.1555	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2502900			19613	1110	12347	12404							-0.0623302129977219
LMEVKTTEI	9	Unmodified	_LMEVKTTEI_					0	0	0			REV__ENST00000579900.5_1_17:73231554-73231771:+|nuORF	REV__ENST00000579900.5_1_17:73231554-73231771:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	532.3689575195312	2	532.288825	1062.5631	0.43135	0.0002296	-2.4143	-0.0012851	-1.9829	-0.0010555	532.2873239204082	54.241	0.30832	54.052	53.893	54.201	-0.18939					10	5	2	0	0	0	0.20553	1	20825	20825		30.225	12.09	1	7759900	+		19614	11809	12348	12405	18835	18835					0.034318303029067465
LMHDWKELFF	10	Unmodified	_LMHDWKELFF_					0	0	0		SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant;SPEF2|p.I1348Nfs*12|1|0.34|ENSG00000152582|chr5:35773981-35773982|-/A|frameshift_variant;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;SPEF2|p.N1040Tfs*10|1|0.32|ENSG00000152582|chr5:35739972-35739972|A/-|frameshift_variant;nc|ENSG00000152582|Q9C093-3|SPEF2;ENST00000503074.1_1_5:35659153-35697983:+|nuORF	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	683.33935546875	2	683.336641	1364.65873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.068	1	44.695	44.195	45.195	-0.3729								0	0	0	0.95507	1	16612	16612		3.5965	0.31518	1				19615	4157	12349	12406	18836	18836					-0.00901396786184705
LMHGLLPP	8	Unmodified	_LMHGLLPP_					0	0	0		AMBN|p.W75L|1|0.12|ENSG00000178522|chr4:70599576-70599576|G/T|missense_variant	AMBN|p.W75L|1|0.12|ENSG00000178522|chr4:70599576-70599576|G/T|missense_variant	AMBN|p.W75L|1|0.12|ENSG00000178522|chr4:70599576-70599576|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	439.2532653808594	2	439.251849	876.489145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.905	1	40.528	40.028	41.028	-0.37732								0	0	0	0.86899	1	15024	15024		17.087	5.9721	1				19616	121	12350	12407	18837	18837					0.04595951721921665
LMHKIYEKKRL	11	Unmodified	_LMHKIYEKKRL_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MULTI-MSMS	HCT116MG_D190212_S2	2	486.95892333984375	3	486.958635	1457.85407	0.072302	3.5208E-05	0.85727	0.00041745	0.92957	0.00045266	486.9591423450058	53.495	1.0317	53.306	52.604	53.636	-0.1894					43	19	3	0	0	0	0.74191	1	20463	20463		0.50596	0.051438	1	20023000			19617	3743	12351	12408	18838	18838					0.14346193738629154
LMKLIIKY	8	Unmodified	_LMKLIIKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	HCT116MG_D190212_S4	4	512.5946655273438	2	511.327556	1020.64056	0.23885	0.00012213	-0.073104	-3.738E-05	0.16574	8.4749E-05	511.32743982173076	52.927	2.4996	52.587	52.04	54.54	-0.34024					126	47	5	0	0	0	0.86388	1	20053	20053		2.8892	0	1	374940000			19618	4680	12352	12409	18839	18839					0.13106513029754296
LMKLIIKY	8	Unmodified	_LMKLIIKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	511.327556	1020.64056	0.30383	0.00015536	-0.09892	-5.058E-05	0.20491	0.00010478	511.3274041493919	52.85	1.6713	52.544	52.038	53.709	-0.3064	-0.02167	-1.8331E-05	NaN	2.8892	93	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145510000			19619	4680	12352	12409							0.13106513029754296
LMKLIIKY	8	Unmodified	_LMKLIIKY_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	511.327556	1020.64056	0.23885	0.00012213	-0.073104	-3.738E-05	0.16574	8.4749E-05	511.32743982173076	52.927	2.4996	52.587	52.04	54.54	-0.34024	0.02167	8.0691E-06	NaN	2.8892	126	47	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374940000			19620	4680	12352	12409							0.13106513029754296
LMLKSFTYEY	10	Unmodified	_LMLKSFTYEY_					0	0	0		ANKRD11|p.K653M|1|0.04|ENSG00000167522|chr16:89284584-89284584|T/A|missense_variant	ANKRD11|p.K653M|1|0.04|ENSG00000167522|chr16:89284584-89284584|T/A|missense_variant	ANKRD11|p.K653M|1|0.04|ENSG00000167522|chr16:89284584-89284584|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	647.8226318359375	2	647.823032	1293.63151	0.53525	0.00034675	-1.0299	-0.00066721	-0.49467	-0.00032046	647.8223462004285	34.223	0.72593	33.838	33.412	34.138	-0.38558					19	13	2	0	0	0	0.77749	1	12493	12493		13.906	3.8321	1	6254600			19621	134	12353	12410	18840	18840					-0.003559251171964206
LMLKSFTYEY	10	Unmodified	_LMLKSFTYEY_					0	0	0		ANKRD11|p.K653M|1|0.04|ENSG00000167522|chr16:89284584-89284584|T/A|missense_variant	ANKRD11|p.K653M|1|0.04|ENSG00000167522|chr16:89284584-89284584|T/A|missense_variant	ANKRD11|p.K653M|1|0.04|ENSG00000167522|chr16:89284584-89284584|T/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	647.823032	1293.63151	0.63585	0.00041192	-0.75451	-0.00048879	-0.11867	-7.6875E-05	647.822409634821	34.135	0.5206	33.841	33.507	34.027	-0.2942	0.0013577	0.0002882	NaN	13.906	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6077200			19622	134	12353	12410							-0.003559251171964206
LMLLLIAELV	10	Unmodified	_LMLLLIAELV_					0	0	0			REV__SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant	REV__SLC44A4|p.S619Lfs*9|1|0.31|ENSG00000204385|chr6:31864888-31864889|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	564.3593139648438	2	564.359053	1126.70355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.265	1	55.981	55.481	56.481	-0.28367								0	0	0	0.93576	1	21356	21356		7.9102	0.62092	1		+		19623	14193	12354	12411	18841	18841					0.14527034027150876
LMLSSEFGAP	10	Unmodified	_LMLSSEFGAP_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-SECPEP	HCT116MG_D190212_S3	3	526.7380981445312	2	526.260068	1050.50558	0.46463	0.00024452	0.10837	5.703E-05	0.573	0.00030155	526.2601603950292	37.409	0.71157	37.107	36.613	37.324	-0.30137					27	15	3	0	0	0	0.26542	1	13781	13781		14.838	0	1	116830000			19624	3720	12355	12412	18842	18842					-0.01765011902648439
LMNRRKFLYQF	11	Unmodified	_LMNRRKFLYQF_					0	0	0		ENST00000545576.1_1_12:8757676-8765375:-|nuORF;nc|ENSG00000111732|Q9GZX7-2|AICDA;ENSG00000111732|ENST00000229335|AICDA	ENST00000545576.1_1_12:8757676-8765375:-|nuORF	ENST00000545576.1_1_12:8757676-8765375:-|nuORF	MSMS	HCT116MG_D190212_S3	3	758.415771484375	2	758.416288	1514.81802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.908	1	51.599	51.099	52.099	-0.30927								0	0	0	0.95581	1	19610	19610		3.2813	1.7994	1				19625	8719	12356	12413	18843	18843					0.08120736561818376
LMNYMDNQYN	10	Unmodified	_LMNYMDNQYN_					0	0	0			REV__DNAH11|p.D1004Y|1|0.48|ENSG00000105877|chr7:21600685-21600685|G/T|missense_variant	REV__DNAH11|p.D1004Y|1|0.48|ENSG00000105877|chr7:21600685-21600685|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	653.4169311523438	2	653.265555	1304.51656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.375	1	35.232	34.732	35.732	-0.14245								0	0	0	0.95507	1	13193	13193		3.5965	0	1		+		19626	10380	12357	12414	18844	18844					-0.12351977590651586
LMPILKFV	8	Unmodified	_LMPILKFV_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-3|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	HCT116MG_D190212_S4	4	480.8011779785156	2	480.801174	959.587796	0.26158	0.00012577	-0.02782	-1.3376E-05	0.23376	0.00011239	480.80104933815164	51.838	1.9737	51.493	50.947	52.92	-0.34541					117	37	5	0	0	0	0.86564	1	19391	19391		2.5775	0	1	368980000	+		19627	9884	12358	12415	18845	18845					0.1063855496696533
LMPKPTHYY	9	Unmodified	_LMPKPTHYY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	HCT116MG_D190212_S1	1	575.2919921875	2	575.291702	1148.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.196	1	39.196	38.696	39.696	0								0	0	0	0.7676	1	14697	14697		9.3474	1.4373	1				19628	6063	12359	12416	18846	18846					0.0005097360524359829
LMPVAPLW	8	Unmodified	_LMPVAPLW_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-MSMS	HCT116MG_D190212_S1	1	926.5172729492188	1	926.516822	925.509546	0.86408	0.00080059	-0.61698	-0.00057164	0.2471	0.00022895	926.5164675989677	57.182	0.15562	57.182	57.1	57.256	0					6	2	3	0	0	0	0.8029	1	22021	22021		11.114	3.8252	1	16780000			19629	3107	12360	12417	18847	18847					0.04381122381710156
LMPVAPLW	8	Unmodified	_LMPVAPLW_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-MSMS	HCT116MG_D190212_S2	2	926.5171508789062	1	926.516822	925.509546	1.0721	0.00099328	-0.18526	-0.00017165	0.88679	0.00082163	926.5164911325885	57.932	0.51892	57.757	57.521	58.04	-0.17493					26	9	5	0	0	0	0.84415	1	22337	22337		6.3541	0	1	331170000			19630	3107	12360	12417	18848	18848					0.04381122381710156
LMPVAPLW	8	Unmodified	_LMPVAPLW_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-MSMS	HCT116MG_D190212_S2	2	926.51708984375	1	926.516822	925.509546	1.07	0.00099137	-0.55852	-0.00051748	0.51147	0.00047389	926.5161050635774	58.39	0.3035	58.22	58.146	58.449	-0.1703					16	5	4	0	0	0	0.84415	1	22590	22590		6.3541	0	1	251280000			19631	3107	12360	12417	18849	18849					0.04381122381710156
LMPVAPLW	8	Unmodified	_LMPVAPLW_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	926.516822	925.509546	0.82037	0.00076009	-0.38379	-0.00035558	0.43659	0.00040451	926.5163138306425	58.337	0.54461	58.337	58.173	58.717	0	0.058589	8.0103E-05	NaN	6.3541	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288570000			19632	3107	12360	12417							0.04381122381710156
LMPVAPLW	8	Unmodified	_LMPVAPLW_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	926.516822	925.509546	0.83126	0.00077017	-0.034802	-3.2245E-05	0.79646	0.00073793	926.5166231452405	57.743	0.46664	57.743	57.412	57.878	0	-0.0067635	6.909E-05	NaN	6.3541	28	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636940000			19633	3107	12360	12417							0.04381122381710156
LMPVAPLW	8	Unmodified	_LMPVAPLW_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	926.516822	925.509546	1.07	0.00099137	-0.55852	-0.00051748	0.51147	0.00047389	926.5161050635774	58.39	0.3035	58.22	58.146	58.449	-0.1703	-0.058589	-8.1791E-05	NaN	6.3541	16	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251280000			19634	3107	12360	12417							0.04381122381710156
LMPVAPLW	8	Unmodified	_LMPVAPLW_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	926.516822	925.509546	1.0721	0.00099328	-0.18526	-0.00017165	0.88679	0.00082163	926.5164911325885	57.932	0.51892	57.757	57.521	58.04	-0.17493	0.0067635	-7.0314E-05	NaN	6.3541	26	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331170000			19635	3107	12360	12417							0.04381122381710156
LMRKGIRWLIE	11	Unmodified	_LMRKGIRWLIE_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-MSMS	HCT116MG_D190212_S4	4	472.6182861328125	3	472.28323	1413.82786	0.30755	0.00014525	0.62831	0.00029674	0.93586	0.00044199	472.2834333839795	53.116	0.88475	52.781	52.515	53.4	-0.33473					23	16	2	0	0	0	0.74191	1	19995	19995		2.8433	0.93691	1	5452500			19636	5736	12361	12418	18850	18850					0.1374992456721884
LMRPRSTPPP	10	Unmodified	_LMRPRSTPPP_					0	0	0			REV__nc|ENSG00000151388|P58397-3|ADAMTS12	REV__nc|ENSG00000151388|P58397-3|ADAMTS12	MSMS	HCT116MG_D190212_S2	2	576.32275390625	2	576.321325	1150.6281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.246	1	28.93	28.43	29.43	-0.31613								0	0	0	0.93576	1	10705	10705		7.9102	0.62092	1		+		19637	12600	12362	12419	18851	18851					0.058808696194319054
LMTKEISSV	9	Unmodified	_LMTKEISSV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S1	1	504.275634765625	2	504.275718	1006.53688	0.38176	0.00019251	-0.4851	-0.00024462	-0.10334	-5.211E-05	504.2753502863764	33.998	0.20896	33.998	33.867	34.076	0					5	3	2	0	0	0	0.045679	1	12628	12628		76.825	22.051	1	4633600			19638	6591	12363	12420	18852	18852					0.033875611314670095
LMTKEISSV	9	Unmodified	_LMTKEISSV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	HCT116MG_D190212_S2	2	504.27545166015625	2	504.275718	1006.53688	0.47069	0.00023736	-0.99686	-0.00050269	-0.52617	-0.00026534	504.2752718971643	34.175	0.36323	34	33.76	34.124	-0.17511					11	6	3	0	0	0	0.011132	1	12716	12716		110.55	35.624	1	37679000			19639	6591	12363	12420	18853	18853					0.033875611314670095
LMTKEISSV	9	Unmodified	_LMTKEISSV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	HCT116MG_D190212_S3	3		2	504.275718	1006.53688	0.34481	0.00017388	0.69317	0.00034955	1.038	0.00052343	504.2757881767707	34.348	0.15601	34.053	33.923	34.079	-0.29419	0.03645	0.001241	NaN	110.55	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2945600			19640	6591	12363	12420							0.033875611314670095
LMTTRKRGL	9	Unmodified	_LMTTRKRGL_					0	0	0			REV__MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	REV__MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	359.2174377441406	3	359.218337	1074.63318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.501	1	32.122	31.622	32.622	-0.37924								0	0	0	0.76877	1	11840	11840		2.9952	0.26005	1		+		19641	13471	12364	12421	18854	18854					0.09885173482052778
LMVDHVTEV	9	Unmodified	_LMVDHVTEV_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	521.7655029296875	2	521.765517	1041.51648	0.19889	0.00010377	0.36398	0.00018991	0.56287	0.00029369	521.7654959100183	38.233	0.31034	38.14	37.96	38.27	-0.09301					11	5	3	0	0	0	0.010304	1	14362	14362		112.59	48.357	1	70094000			19642	6414	12365	12422	18855	18855					-0.00261609528365625
LMVDHVTEV	9	Unmodified	_LMVDHVTEV_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MSMS	HCT116MG_D190212_S3	3	521.765380859375	2	521.765517	1041.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.479	1	38.178	37.678	38.678	-0.30137								0	0	0	0.014248	1	14255	14255		100.37	45.598	1				19643	6414	12365	12422	18856	18856					-0.00261609528365625
LMVDHVTEV	9	Unmodified	_LMVDHVTEV_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	521.7649536132812	2	521.765517	1041.51648	0.18419	9.6106E-05	-0.48202	-0.0002515	-0.29783	-0.0001554	521.7653517671798	38.564	0.23324	38.182	38.051	38.284	-0.38163					7	4	2	0	0	0	0.084109	1	14141	14141		61.357	27.255	1	4632000			19644	6414	12365	12422	18857	18857					-0.00261609528365625
LMVPPLLVAL	10	Unmodified	_LMVPPLLVAL_					0	0	0			REV__ENSG00000091947|ENST00000206380|TMEM101	REV__ENSG00000091947|ENST00000206380|TMEM101	MULTI-SECPEP	HCT116MG_D190212_S1	1	533.7819213867188	2	533.340664	1064.66677	0.46049	0.0002456	-0.30559	-0.00016298	0.15491	8.2618E-05	533.3403507312083	53.021	0.66843	53.021	52.794	53.462	0					26	12	3	0	0	0	0.30961	1	20462	20462		4.3292	4.3292	1	32185000	+		19645	11008	12366	12423	18858	18858					0.13702782201266928
LMVPPLLVAL	10	Unmodified	_LMVPPLLVAL_					0	0	0			REV__ENSG00000091947|ENST00000206380|TMEM101	REV__ENSG00000091947|ENST00000206380|TMEM101	MULTI-SECPEP	HCT116MG_D190212_S3	3	533.7821655273438	2	533.340664	1064.66677	0.51357	0.00027391	-0.13184	-7.0317E-05	0.38173	0.00020359	533.3404731066611	53.681	1.1483	53.381	53.039	54.187	-0.29946					61	21	4	0	0	0	0.30961	1	20408	20408		4.3292	4.3292	1	54027000	+		19646	11008	12366	12423	18859	18859					0.13702782201266928
LMVPPLLVAL	10	Unmodified	_LMVPPLLVAL_					0	0	0			REV__ENSG00000091947|ENST00000206380|TMEM101	REV__ENSG00000091947|ENST00000206380|TMEM101	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	533.340664	1064.66677	0.32398	0.00017279	-0.039879	-2.1269E-05	0.2841	0.00015152	533.3405433284203	53.385	1.6514	53.195	52.293	53.945	-0.18922	-0.061829	9.7704E-05	NaN	4.3292	107	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662070000	+		19647	11008	12366	12423							0.13702782201266928
LMVPPLLVAL	10	Unmodified	_LMVPPLLVAL_					0	0	0			REV__ENSG00000091947|ENST00000206380|TMEM101	REV__ENSG00000091947|ENST00000206380|TMEM101	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	533.340664	1064.66677	0.50356	0.00026857	-0.1714	-9.1415E-05	0.33216	0.00017715	533.3404784500458	53.761	1.6668	53.431	52.989	54.655	-0.32923	0.17433	-4.2588E-05	NaN	4.3292	91	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247180000	+		19648	11008	12366	12423							0.13702782201266928
LMVRYKLNSEL	11	Unmodified	_LMVRYKLNSEL_					0	0	0		nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	nc|ENSG00000053747|Q16787-4|LAMA3	MSMS	HCT116MG_D190212_S1	1	683.3825073242188	2	683.38158	1364.74861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.531	1	43.531	43.031	44.031	0								0	0	0	0.94416	1	16448	16448		9.3831	2.2814	1				19649	1063	12367	12424	18860	18860					0.08082232822403057
LMVTMDCFFP	10	Unmodified	_LMVTMDCFFP_					0	0	0			REV__ENSG00000180042|ENST00000572493|OR1R1P	REV__ENSG00000180042|ENST00000572493|OR1R1P	MSMS	HCT116MG_D190212_S3	3	602.2647705078125	2	602.265981	1202.51741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.75	1	56.467	55.967	56.967	-0.28367								0	0	0	0.93576	1	21551	21551		7.9102	2.6795	1		+		19650	13650	12368	12425	18861	18861					-0.07574854475319626
LMYSREQP	8	Unmodified	_LMYSREQP_					0	0	0			REV__nc|ENSG00000085224|P46100-2|ATRX	REV__nc|ENSG00000085224|P46100-2|ATRX	MULTI-SECPEP	HCT116MG_D190212_S2	2	512.2412109375	2	512.250034	1022.48552	0.14867	7.6155E-05	-0.0048879	-2.5038E-06	0.14378	7.3651E-05	512.2502230282598	19.075	0.26068	18.706	18.575	18.836	-0.3695					6	4	2	0	0	0	0.30262	1	6556	6556		8.5933	3.8373	1	3546100	+		19651	10918	12369	12426	18862	18862					-0.024827628425896364
LNARPGPGK	9	Unmodified	_LNARPGPGK_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2;RCOR2|p.R230W|1|0.16|ENSG00000167771|chr11:63914157-63914157|G/A|missense_variant	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MSMS	HCT116MG_D190212_S4	4	455.2680969238281	2	455.266876	908.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.719	1	49.356	48.856	49.856	-0.36213								0	0	0	0.76913	1	18451	18451		3.9444	1.6417	1				19652	4956	12370	12427	18863	18863					0.06128026711473922
LNCSGLNLIYL	11	Unmodified	_LNCSGLNLIYL_					0	0	0		ENST00000278618.8_1_11:105962088-105962127:+|nuORF	ENST00000278618.8_1_11:105962088-105962127:+|nuORF	ENST00000278618.8_1_11:105962088-105962127:+|nuORF	MSMS	HCT116MG_D190212_S1	1	408.2493591308594	3	408.221525	1221.64274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.523	1	57.523	57.023	58.023	0								0	0	0	0.95581	1	22137	22137		1.3296	0	1				19653	6934	12371	12428	18864	18864					0.040788969769437244
LNCWPTGEL	9	Unmodified	_LNCWPTGEL_					0	0	0			REV__GP2|p.E250Gfs*33|1|0.34|ENSG00000169347|chr16:20320380-20320381|-/C|frameshift_variant	REV__GP2|p.E250Gfs*33|1|0.34|ENSG00000169347|chr16:20320380-20320381|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	516.7462768554688	2	516.744585	1031.47462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.576	1	38.194	37.694	38.694	-0.38163								0	0	0	0.76603	1	14143	14143		14.838	1.7958	1		+		19654	13238	12372	12429	18865	18865					-0.03986165216883819
LNDPKMYVQTV	11	Oxidation (M)	_LNDPKM(Oxidation (M))YVQTV_		LNDPKM(1)YVQTV		LNDPKM(44)YVQTV	0	0	1		ENSG00000055130|ENST00000325222|CUL1;CUL1|p.Y377Ifs*12|1|0.28|ENSG00000055130|chr7:148783821-148783822|-/A|frameshift_variant;CUL1|p.L446Ifs*3|1|0.4|ENSG00000055130|chr7:148786586-148786589|CACT/-|frameshift_variant	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MSMS	HCT116MG_D190212_S2	2	662.3361206054688	2	662.334295	1322.65404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.188	1	23.808	23.308	24.308	-0.38003								0	0	0	0.58477	1	8656	8656		43.772	16.144	1				19655	1077	12373	12430	18866	18866		19			0.005616742803795205
LNDRMCDP	8	Unmodified	_LNDRMCDP_					0	0	0		ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;ADAMTS9|p.S1884Ffs*2|1|0.35|ENSG00000163638|chr3:64533233-64533233|G/-|frameshift_variant;nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;ADAMTS9|p.C1222Lfs*15|1|0.3|ENSG00000163638|chr3:64604004-64604004|C/-|frameshift_variant	ENST00000482490.5_1_3:64536549-64672246:-|nuORF	ENST00000482490.5_1_3:64536549-64672246:-|nuORF	MSMS	HCT116MG_D190212_S1	1	482.2044677734375	2	482.20477	962.394986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.4	1	14.4	13.9	14.9	0								0	0	0	0.8837	1	4710	4710		2.8892	0	1				19656	50	12374	12431	18867	18867					-0.08771555162525146
LNDRRRLAL	9	Unmodified	_LNDRRRLAL_					0	0	0		nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-7|APP	nc|ENSG00000142192|P05067-7|APP	MSMS	HCT116MG_D190212_S1	1	376.2330627441406	3	376.231634	1125.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.678	1	58.678	58.178	59.178	0								0	0	0	0.7696	1	22611	22611		1.1933	0.41681	1				19657	3748	12375	12432	18868	18868					0.11526436476970048
LNEGAYDQLHS	11	Unmodified	_LNEGAYDQLHS_					0	0	0			REV__LILRA5|p.V263G|1|0.15|ENSG00000187116|chr19:54307525-54307525|A/C|missense_variant	REV__LILRA5|p.V263G|1|0.15|ENSG00000187116|chr19:54307525-54307525|A/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	624.2359008789062	2	623.788566	1245.56258	0.27919	0.00017416	0.079262	4.9443E-05	0.35846	0.0002236	623.7886516890575	30.352	0.50541	29.995	29.545	30.05	-0.3571					16	11	2	0	0	0	0.36308	1	10826	10826		4.5289	1.7937	1	10173000	+		19658	16978	12376	12433	18869	18869					-0.05037873092555856
LNEILYPPL	9	Unmodified	_LNEILYPPL_					0	0	0		PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant;nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1;PLCB1|p.N466Ifs*79|1|0.15|ENSG00000182621|chr20:8717728-8717728|A/-|frameshift_variant	PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant	PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	536.30810546875	2	536.307875	1070.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.947	1	56.668	56.168	57.168	-0.27913								0	0	0	0.7696	1	21630	21630		2.3027	0	1				19659	5679	12377	12434	18870	18870					0.06872084279893897
LNEPLYNRYE	10	Unmodified	_LNEPLYNRYE_					0	0	0		DHX8|p.L1198_E1199insN|1|0.24|ENSG00000067596|chr17:43523777-43523778|-/TAA|inframe_insertion	DHX8|p.L1198_E1199insN|1|0.24|ENSG00000067596|chr17:43523777-43523778|-/TAA|inframe_insertion	DHX8|p.L1198_E1199insN|1|0.24|ENSG00000067596|chr17:43523777-43523778|-/TAA|inframe_insertion	MSMS	HCT116MG_D190212_S3	3	655.8218383789062	2	655.822409	1309.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.426	1	21.445	20.945	21.945	0.018446								0	0	0	0.88085	1	7466	7466		18.373	3.1246	1				19660	672	12378	12435	18871	18871					-0.012164231617589394
LNFLELIL	8	Unmodified	_LNFLELIL_					0	0	0		ENST00000475108.5_1_1:65897625-65897682:+|nuORF	ENST00000475108.5_1_1:65897625-65897682:+|nuORF	ENST00000475108.5_1_1:65897625-65897682:+|nuORF	MSMS	HCT116MG_D190212_S1	1	487.8004150390625	2	487.799686	973.584819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.155	1	53.155	52.655	53.655	0								0	0	0	0.8837	1	20350	20350		4.756	0	1				19661	8198	12379	12436	18872	18872					0.09697003113831215
LNFMFPKEK	9	Unmodified	_LNFMFPKEK_					0	0	0			REV__ENSG00000169499|ENST00000617275|PLEKHA2	REV__ENSG00000169499|ENST00000617275|PLEKHA2	MULTI-MSMS	HCT116MG_D190212_S1	1	385.2070617675781	3	385.207327	1152.60015	-0.076172	-2.9342E-05	-0.3283	-0.00012646	-0.40447	-0.00015581	385.2071515508641	21.252	0.26546	21.252	21.12	21.385	0					9	4	3	0	0	0	0.51301	1	7494	7494		16.149	0.90062	1	7108600	+		19662	13245	12380	12437	18873	18873					0.02995546639363056
LNFRIFQW	8	Unmodified	_LNFRIFQW_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	375.20654296875	3	375.206426	1122.59745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.581	1	60.315	59.815	60.815	-0.26582								0	0	0	0.8837	1	22830	22830		1.4819	0	1				19663	18106	12381	12438	18874	18874					0.04105459296715708
LNFYYHFFFEC	11	Unmodified	_LNFYYHFFFEC_					0	0	0			REV__tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	REV__tr|U7ST67|U7ST67_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01308PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	510.6949157714844	3	510.556796	1528.64856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.769	1	49.453	48.953	49.953	-0.3155								0	0	0	0.95954	1	18750	18750		0.45452	0	1		+		19664	17786	12382	12439	18875	18875					-0.09462004511419764
LNGANREYD	9	Unmodified	_LNGANREYD_					0	0	0			REV__ENSG00000128045|ENST00000248706|RASL11B	REV__ENSG00000128045|ENST00000248706|RASL11B	MSMS	HCT116MG_D190212_S3	3	526.2443237304688	2	526.243795	1050.47304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.92	1	18.989	18.489	19.489	0.069159								0	0	0	0.67173	1	6456	6456		20.454	0	1		+		19665	11869	12383	12440	18876	18876					-0.05018082981291627
LNGTEYHVP	9	Unmodified	_LNGTEYHVP_					0	0	0			REV__KRTAP26-1|p.C71Y|1|0.34|ENSG00000197683|chr21:30319824-30319824|C/T|missense_variant	REV__KRTAP26-1|p.C71Y|1|0.34|ENSG00000197683|chr21:30319824-30319824|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	515.2532348632812	2	515.253631	1028.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.872	1	36.487	35.987	36.987	-0.38486								0	0	0	0.58443	1	13510	13510		24.674	8.8267	1		+		19666	16939	12384	12441	18877	18877					-0.020397069705268223
LNIEVDAAPPV	11	Unmodified	_LNIEVDAAPPV_					0	0	0		CON__A2AB72;ENSG00000108759|ENST00000225899|KRT32;CON__Q14532	CON__A2AB72	CON__A2AB72	MSMS	HCT116MG_D190212_S4	4	379.8762512207031	3	379.876523	1136.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.466	1	32.086	31.586	32.586	-0.37924								0	0	0	0.94012	1	11825	11825		6.2344	1.1868	1			+	19667	535	12385	12442	18878	18878					0.044899774406076176
LNIKTYTENIY	11	Unmodified	_LNIKTYTENIY_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MSMS	HCT116MG_D190212_S1	1	686.3619384765625	2	686.361367	1370.70818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.129	1	29.129	28.629	29.629	0								0	0	0	0.95196	1	10635	10635		5.2969	0	1		+		19668	12616	12386	12443	18879	18879					0.03765589703630212
LNIWQKFYDA	10	Unmodified	_LNIWQKFYDA_					0	0	0			REV__nc|ENSG00000117419|O43414-3|ERI3	REV__nc|ENSG00000117419|O43414-3|ERI3	MSMS	HCT116MG_D190212_S4	4	649.333740234375	2	649.332413	1296.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.507	1	31.137	30.637	31.637	-0.37026								0	0	0	0.92607	1	11438	11438		10.074	1.3285	1		+		19669	11615	12387	12444	18880	18880					0.013813725688805789
LNKEAWKY	8	Unmodified	_LNKEAWKY_					0	0	0		ENST00000464874.1_1_7:105515663-105517004:-|nuORF	ENST00000464874.1_1_7:105515663-105517004:-|nuORF	ENST00000464874.1_1_7:105515663-105517004:-|nuORF	MSMS	HCT116MG_D190212_S1	1	351.1916809082031	3	351.190553	1050.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.504	1	28.504	28.004	29.004	0								0	0	0	0.8837	1	10385	10385		3.5965	0.8613	1				19670	8086	12388	12445	18881	18881					0.026577603058512977
LNKEFKRQ	8	Unmodified	_LNKEFKRQ_					0	0	0			REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	MSMS	HCT116MG_D190212_S2	2	532.0818481445312	2	531.806365	1061.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.819	1	48.676	48.176	49.176	-0.1437								0	0	0	0.87079	1	18663	18663		16.942	1.0951	1		+		19671	13432	12389	12446	18882	18882					0.06984253945756791
LNKEIYKPL	9	Unmodified	_LNKEIYKPL_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant;DNAH7|p.P2310Tfs*50|1|0.14|ENSG00000118997|chr2:195864727-195864728|-/T|frameshift_variant;DNAH7|p.I2732Lfs*15|1|0.34|ENSG00000118997|chr2:195857597-195857597|T/-|frameshift_variant;DNAH7|p.T2935Ifs*12|1|0.24|ENSG00000118997|chr2:195845142-195845143|AG/-|frameshift_variant	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MSMS	HCT116MG_D190212_S2	2	559.7739868164062	2	559.334424	1116.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.429	1	52.242	51.742	52.742	-0.18725								0	0	0	0.42657	1	20140	20140		32.305	3.2239	1				19672	2622	12390	12447	18883	18883					0.10063462062566941
LNKKAKLCVL	10	Unmodified	_LNKKAKLCVL_					0	0	0		KIF2C|p.R420C|1|0.36|ENSG00000142945|chr1:44759239-44759239|C/T|missense_variant	KIF2C|p.R420C|1|0.36|ENSG00000142945|chr1:44759239-44759239|C/T|missense_variant	KIF2C|p.R420C|1|0.36|ENSG00000142945|chr1:44759239-44759239|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	565.7457275390625	2	565.359919	1128.70529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.16	1	52.971	52.471	53.471	-0.18922								0	0	0	0.95381	1	20437	20437		3.9444	1.8846	1				19673	9266	12391	12448	18884	18884					0.14608087835767947
LNKKCVVPL	9	Unmodified	_LNKKCVVPL_					0	0	0			REV__ENST00000533188.1_1_1:201457913-201476204:-|nuORF	REV__ENST00000533188.1_1_1:201457913-201476204:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	507.8145446777344	2	507.312438	1012.61032	0.47689	0.00024193	0.36272	0.00018401	0.83961	0.00042594	507.31253116017183	50.552	0.52343	50.38	50.138	50.662	-0.1719					25	9	4	0	0	0	0.57626	1	19443	19443		12.532	0	1	250580000	+		19674	16304	12392	12449	18885	18885					0.10452154364577382
LNKKKKGAK	9	Unmodified	_LNKKKKGAK_					0	0	0		tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	tr|U7ST00|U7ST00_FUSNUNagDproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01658PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	507.82489013671875	2	507.842751	1013.67095	0.28458	0.00014452	0.8309	0.00042196	1.1155	0.00056649	507.84305531780996	58.715	0.25523	58.715	58.565	58.82	0					9	4	3	0	0	0	0.76814	1	22610	22610		0.52476	0	1	13415000			19675	18426	12393	12450	18886	18886					0.16466007739188626
LNKLYIIKL	9	Unmodified	_LNKLYIIKL_					0	0	0			REV__tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	REV__tr|U7T564|U7T564_FUSNUDNArepairproteinRadAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=radAPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	559.48046875	2	559.37081	1116.72707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.811	1	50.497	49.997	50.997	-0.31381								0	0	0	0.76902	1	19170	19170		4.3292	2.0265	1		+		19676	17980	12394	12451	18887	18887					0.17337215855991417
LNKRIRYLYKH	11	Unmodified	_LNKRIRYLYKH_					0	0	0		ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	MULTI-SECPEP	HCT116MG_D190212_S2	2	751.948486328125	2	752.448977	1502.8834	0.94188	0.00070872	0.48905	0.00036799	1.4309	0.0010767	752.4494831910408	54.175	0.77238	53.986	53.429	54.201	-0.1894					22	14	2	0	0	0	0.36611	1	20710	20710		1.3295	0.25807	1	30050000			19677	2299	12395	12452	18888	18888					0.15207474079170424
LNLDLFQNK	9	Unmodified	_LNLDLFQNK_					0	0	0			REV__ENSG00000214415|ENST00000398291|GNAT3	REV__ENSG00000214415|ENST00000398291|GNAT3	MULTI-SECPEP	HCT116MG_D190212_S4	4	553.2590942382812	2	552.806031	1103.59751	0.443	0.00024489	-0.31429	-0.00017374	0.12871	7.115E-05	552.8058494303918	28.65	0.15546	28.315	28.216	28.372	-0.33512					4	2	2	0	0	0	0.19936	1	10318	10318		27.629	6.0918	1	1247200	+		19678	14267	12396	12453	18889	18889					0.04985414506040797
LNLLRLVQLQ	10	Unmodified	_LNLLRLVQLQ_					0	0	0			REV__ENST00000526524.5_1_8:145579333-145580709:-|nuORF	REV__ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MSMS	HCT116MG_D190212_S1	1	605.3877563476562	2	605.387522	1208.76049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.226	1	15.226	14.726	15.726	0								0	0	0	0.96377	1	5043	5043		1.6526	0	1		+		19679	13714	12397	12454	18890	18890					0.16446217627890292
LNLPTLPEVK	10	Unmodified	_LNLPTLPEVK_					0	0	0		APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.S3866Yfs*21|1|0.06|ENSG00000084674|chr2:21005271-21005272|-/TAAGAAAT|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	375.2275695800781	3	375.228897	1122.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.762	1	14.762	14.262	15.262	0								0	0	0	0.95631	1	4856	4856		3.3196	0	1				19680	161	12398	12455	18891	18891					0.10843444716988415
LNLQHEFSRR	10	Unmodified	_LNLQHEFSRR_					0	0	0			REV__ENST00000344824.10_2_19:16212297-16212408:+|nuORF	REV__ENST00000344824.10_2_19:16212297-16212408:+|nuORF	MSMS	HCT116MG_D190212_S3	3	650.351318359375	2	650.34946	1298.68437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.547	1	35.248	34.748	35.748	-0.29922								0	0	0	0.87399	1	13113	13113		19.257	2.1441	1		+		19681	15005	12399	12456	18892	18892					0.04697213780468701
LNNDTKEGKP	10	Unmodified	_LNNDTKEGKP_					0	0	0		SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant;ENSG00000139514|ENST00000380752|SLC7A1	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	SLC7A1|p.Q436Sfs*15|1|0.07|ENSG00000139514|chr13:29517777-29517777|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	558.2882080078125	2	558.288202	1114.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.645	1	20.679	20.179	21.179	0.034473								0	0	0	0.90291	1	7152	7152		15.248	3.0078	1				19682	3631	12400	12457	18893	18893					0.00915332258387025
LNNLYLIY	8	Unmodified	_LNNLYLIY_					0	0	0		ENST00000515407.1_1_5:102890375-102890540:-|nuORF	ENST00000515407.1_1_5:102890375-102890540:-|nuORF	ENST00000515407.1_1_5:102890375-102890540:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	514.7726440429688	2	513.286943	1024.55933	0.28596	0.00014678	0.10355	5.3151E-05	0.38951	0.00019993	513.2868743839414	53.588	0.67675	53.253	52.983	53.66	-0.33473					33	12	4	0	0	0	0.81097	1	19952	19952		10.183	1.5901	1	18293000			19683	8532	12401	12458	18894	18894					0.04803528591401118
LNPPSSTTPEP	11	Unmodified	_LNPPSSTTPEP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S1	1	570.262939453125	2	570.282586	1138.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.017	1	15.017	14.517	15.517	0								0	0	0	0.95686	1	4959	4959		2.7352	0	1		+		19684	13681	12402	12459	18895	18895					-0.013114898357571292
LNPVHWKVF	9	Unmodified	_LNPVHWKVF_					0	0	0		RSAD2|p.R244H|1|0.32|ENSG00000134321|chr2:6887157-6887157|G/A|missense_variant	RSAD2|p.R244H|1|0.32|ENSG00000134321|chr2:6887157-6887157|G/A|missense_variant	RSAD2|p.R244H|1|0.32|ENSG00000134321|chr2:6887157-6887157|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	570.0089721679688	2	570.321651	1138.62875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.091	1	49.776	49.276	50.276	-0.31525								0	0	0	0.67254	1	18880	18880		21.747	7.8406	1				19685	18127	12403	12460	18896	18896					0.06498032330796377
LNQFNFTY	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LNQFNFTY_					1	0	0			REV__CLINT1|p.Q56Yfs*9|1|0.1|ENSG00000113282|chr5:157816811-157816812|-/AAGGTGTA|frameshift_variant	REV__CLINT1|p.Q56Yfs*9|1|0.1|ENSG00000113282|chr5:157816811-157816812|-/AAGGTGTA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	544.75537109375	2	544.756007	1087.49746	0.29068	0.00015835	-0.47164	-0.00025693	-0.18096	-9.858E-05	544.7555408732736	40.023	0.22215	39.721	39.629	39.851	-0.30137					7	5	2	0	0	0	0.46267	1	14871	14871		44.407	13.77	1	7866300	+		19686	10203	12404	12461	18897	18897					-0.04278822827723161
LNQILAQAKAR	11	Unmodified	_LNQILAQAKAR_					0	0	0			REV__NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant	REV__NCAPD2|p.F837Sfs*36|1|0.57|ENSG00000010292|chr12:6526307-6526307|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	613.3697509765625	2	613.372404	1224.73025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.726	1	48.359	47.859	48.859	-0.36728								0	0	0	0.95686	1	18052	18052		2.7352	0.67545	1		+		19687	10513	12405	12462	18898	18898					0.12687858962704013
LNQIRLEVKR	10	Unmodified	_LNQIRLEVKR_					0	0	0			REV__ENST00000216121.11_1_22:29951115-29951346:-|nuORF	REV__ENST00000216121.11_1_22:29951115-29951346:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	634.8931884765625	2	634.893503	1267.77245	0.55352	0.00035143	-0.69062	-0.00043847	-0.1371	-8.7042E-05	634.8927205719482	55.903	0.4239	55.591	55.454	55.878	-0.312					19	7	4	0	0	0	0.87195	1	20947	20947		5.7319	1.203	1	7193000	+		19688	14506	12406	12463	18899	18899					0.1492783437106482
LNQKRRLPRRK	11	Unmodified	_LNQKRRLPRRK_					0	0	0		ENST00000582588.1_1_18:47015724-47015769:-|nuORF;ENST00000332968.11_3_18:47010137-47015769:-|nuORF	ENST00000582588.1_1_18:47015724-47015769:-|nuORF	ENST00000582588.1_1_18:47015724-47015769:-|nuORF	MSMS	HCT116MG_D190212_S1	1	732.973388671875	2	732.970942	1463.92733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.697	1	23.697	23.197	24.197	0								0	0	0	0.96003	1	8451	8451		1.0715	0.20709	1				19689	7171	12407	12464	18900	18900					0.21392503296124232
LNQREELEA	9	Unmodified	_LNQREELEA_					0	0	0			REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF	REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	551.28076171875	2	551.280377	1100.5462	0.33993	0.0001874	0.50723	0.00027963	0.84716	0.00046702	551.2805398248098	30.766	0.29875	30.505	30.358	30.656	-0.26071					9	5	3	0	0	0	0.035349	1	11227	11227		81.89	6.1294	1	13287000	+		19690	10001	12408	12465	18901	18901					-4.9542586793904775E-05
LNQREELEA	9	Unmodified	_LNQREELEA_					0	0	0			REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF	REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	551.280377	1100.5462	0.53653	0.00029578	0.38659	0.00021312	0.92312	0.0005089	551.2804537219897	30.373	0.20716	30.373	30.244	30.451	0	-0.04276	6.5635E-05	NaN	81.89	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7390700	+		19691	10001	12408	12465							-4.9542586793904775E-05
LNQREELEA	9	Unmodified	_LNQREELEA_					0	0	0			REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF	REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	551.280377	1100.5462	0.17246	9.5071E-05	0.043247	2.3841E-05	0.2157	0.00011891	551.2802864347273	30.639	0.36084	30.37	30.197	30.558	-0.26915	-0.046073	-0.00031292	NaN	81.89	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66429000	+		19692	10001	12408	12465							-4.9542586793904775E-05
LNQREELEA	9	Unmodified	_LNQREELEA_					0	0	0			REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF	REV__ENST00000585133.1_1_17:29162236-29196669:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	551.280377	1100.5462	0.33993	0.0001874	0.50723	0.00027963	0.84716	0.00046702	551.2805398248098	30.766	0.29875	30.505	30.358	30.656	-0.26071	0.088833	0.00019865	NaN	81.89	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13287000	+		19693	10001	12408	12465							-4.9542586793904775E-05
LNRAQERV	8	Unmodified	_LNRAQERV_					0	0	0		nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MULTI-MSMS	HCT116MG_D190212_S1	1	493.2807922363281	2	493.280515	984.546476	0.41507	0.00020474	-0.17054	-8.4123E-05	0.24453	0.00012062	493.2803634390243	45.686	0.36676	45.686	45.399	45.765	0					8	6	2	0	0	0	0.80542	1	17335	17335		10.824	1.4765	1	7495900			19694	9513	12409	12466	18902	18902					0.05358510251858206
LNRFILLKPKP	11	Unmodified	_LNRFILLKPKP_					0	0	0		ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	MSMS	HCT116MG_D190212_S3	3	669.934814453125	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.892	1	49.576	49.076	50.076	-0.31525								0	0	0	0.95954	1	18800	18800		1.3295	0	1				19695	2874	12410	12467	18903	18903					0.19931356450047133
LNRQRKRKEYW	11	Unmodified	_LNRQRKRKEYW_					0	0	0		ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	MSMS	HCT116MG_D190212_S2	2	788.9412231445312	2	788.94459	1575.87463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.846	1	14.527	14.027	15.027	-0.31952								0	0	0	0.96141	1	4891	4891		0.35063	0.043601	1				19696	5860	12411	12468	18904	18904					0.10972500442699129
LNRTTQWEWFH	11	Unmodified	_LNRTTQWEWFH_					0	0	0		ENSG00000104941|ENST00000221538|RSPH6A;RSPH6A|p.A632Pfs*47|1|0.3|ENSG00000104941|chr19:45800468-45800468|C/-|frameshift_variant	ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	MSMS	HCT116MG_D190212_S1	1	506.5814208984375	3	506.580992	1516.72115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.6	1	49.6	49.1	50.1	0								0	0	0	0.95954	1	18904	18904		0.45452	0	1				19697	1969	12412	12469	18905	18905					-0.016545343936513746
LNSCINPIAL	10	Unmodified	_LNSCINPIAL_					0	0	0		nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;nc|ENSG00000136160|P24530-3|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	MULTI-MSMS	HCT116MG_D190212_S2	2	529.6467895507812	2	529.289159	1056.56377	0.66093	0.00034982	-0.88897	-0.00047052	-0.22803	-0.0001207	529.2887339207416	48.282	0.20241	48.138	47.982	48.185	-0.1437					6	3	2	0	0	0	0.64492	1	18459	18459		24.991	5.734	1	20508000			19698	3397	12413	12470	18906	18906					0.037746697426200626
LNSNKEVAHLV	11	Unmodified	_LNSNKEVAHLV_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-MSMS	HCT116MG_D190212_S3	3	612.341064453125	2	612.340769	1222.66699	0.39046	0.00023909	0.31085	0.00019035	0.70131	0.00042944	612.3410181672765	15.814	0.20828	15.899	15.769	15.977	0.085423					9	3	3	0	0	0	0.72792	1	5225	5225		11.495	3.8858	1	4281100	+		19699	13734	12414	12471	18907	18907					0.06455873454797256
LNSNKEVAHLV	11	Unmodified	_LNSNKEVAHLV_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-MSMS	HCT116MG_D190212_S4	4	612.3408203125	2	612.340769	1222.66699	0.15228	9.325E-05	-0.16975	-0.00010395	-0.017469	-1.0697E-05	612.3405879434858	15.941	0.40318	15.778	15.667	16.07	-0.16364					11	7	2	0	0	0	0.72792	1	5191	5191		11.495	0.6952	1	1093600	+		19700	13734	12414	12471	18908	18908					0.06455873454797256
LNSNKEVAHLV	11	Unmodified	_LNSNKEVAHLV_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-SECPEP	HCT116MG_D190212_S4	4	612.45751953125	2	612.340769	1222.66699	0.15228	9.325E-05	-0.16975	-0.00010395	-0.017469	-1.0697E-05	612.3405879434858	15.941	0.40318	15.778	15.667	16.07	-0.16364					11	7	2	0	0	0	0.36308	1	5150	5150		4.5289	0	1	1093600	+		19701	13734	12414	12471	18909	18909					0.06455873454797256
LNSNKEVAHLV	11	Unmodified	_LNSNKEVAHLV_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	612.340769	1222.66699	0.39046	0.00023909	0.31085	0.00019035	0.70131	0.00042944	612.3410181672765	15.814	0.20828	15.899	15.769	15.977	0.085423	0.060817	0.00050483	NaN	11.495	9	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4281100	+		19702	13734	12414	12471							0.06455873454797256
LNSPRNTTL	9	Unmodified	_LNSPRNTTL_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000466047.5_1_10:121609046-121633060:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MSMS	HCT116MG_D190212_S1	1	508.27947998046875	2	508.28018	1014.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.351	1	38.351	37.851	38.851	0								0	0	0	0.76592	1	14356	14356		15.248	2.206	1				19703	6174	12415	12472	18910	18910					0.03911670812135526
LNSQLHYKRQM	11	Unmodified	_LNSQLHYKRQM_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20;TCF20|p.P1561Lfs*54|1|0.31|ENSG00000100207|chr22:42210624-42210624|G/-|frameshift_variant;TCF20|p.K1579Nfs*36|1|0.18|ENSG00000100207|chr22:42210569-42210569|T/-|frameshift_variant;TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant;TCF20|p.L1388Efs*6|1|0.17|ENSG00000100207|chr22:42211143-42211144|AA/-|frameshift_variant;TCF20|p.L1424Gfs*21|1|0.32|ENSG00000100207|chr22:42211037-42211038|-/TCCT|frameshift_variant	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MSMS	HCT116MG_D190212_S2	2	709.3751831054688	2	709.372078	1416.7296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.695	1	45.593	45.093	46.093	-0.1014								0	0	0	0.94269	1	17384	17384		10.151	1.995	1				19704	1674	12416	12473	18911	18911					0.03790696251326153
LNSRLKRARLA	11	Unmodified	_LNSRLKRARLA_					0	0	0			REV__ENSG00000147324|ENST00000276282|MFHAS1	REV__ENSG00000147324|ENST00000276282|MFHAS1	MSMS	HCT116MG_D190212_S2	2	649.40966796875	2	649.412395	1296.81024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.957	1	37.864	37.364	38.364	-0.09301								0	0	0	0.95686	1	14245	14245		2.7352	0	1		+		19705	12510	12417	12474	18912	18912					0.1737034535656221
LNTNVDEN	8	Unmodified	_LNTNVDEN_					0	0	0			REV__ENSG00000145715|ENST00000274376|RASA1	REV__ENSG00000145715|ENST00000274376|RASA1	MULTI-MSMS	HCT116MG_D190212_S1	1	918.4176025390625	1	918.416316	917.40904	0.99918	0.00091766	0.53824	0.00049433	1.5374	0.001412	918.416929284377	21.053	0.21528	21.053	20.904	21.12	0					5	3	2	0	0	0	0.027354	1	7406	7406		147.06	58.105	1	4711500	+		19706	12456	12418	12475	18913	18913					-0.052968631382441345
LNTWEHAC	8	Carbamidomethyl (C)	_LNTWEHAC(Carbamidomethyl (C))_	LNTWEHAC(1)		LNTWEHAC(55)		0	1	0		KLHL11|p.V436A|1|0.29|ENSG00000178502|chr17:41854560-41854560|A/G|missense_variant	KLHL11|p.V436A|1|0.29|ENSG00000178502|chr17:41854560-41854560|A/G|missense_variant	KLHL11|p.V436A|1|0.29|ENSG00000178502|chr17:41854560-41854560|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7245483398438	2	515.724184	1029.43381	0.22808	0.00011763	0.1203	6.2043E-05	0.34839	0.00017967	515.7242985635905	23.389	0.26059	23.349	23.239	23.5	-0.03968					9	4	3	0	0	0	0.34844	1	8267	8267		54.774	22.468	1	14228000			19707	9269	12419	12476	18914	18914	47				-0.07972506536520996
LNVCFNKLFFH	11	Unmodified	_LNVCFNKLFFH_					0	0	0		BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant	BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant	BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	691.3570556640625	2	691.357908	1380.70126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.033	1	34.875	34.375	35.375	-0.15834								0	0	0	0.95196	1	13054	13054		5.2969	2.0156	1				19708	268	12420	12477	18915	18915					0.026139983420307544
LNVCLECLFY	10	Unmodified	_LNVCLECLFY_					0	0	0			REV__ENST00000394729.6_1_3:53226324-53226528:+|nuORF	REV__ENST00000394729.6_1_3:53226324-53226528:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	609.0164184570312	2	608.790678	1215.5668	0.72631	0.00044217	-0.54648	-0.00033269	0.17983	0.00010948	608.7903968654015	41.38	0.36421	41.38	41.237	41.602	0					15	6	4	0	0	0	0.78781	1	15649	15649		13.042	2.2185	1	58730000	+		19709	15343	12421	12478	18916	18916					-0.03235823194859222
LNVLNRHHWMY	11	Unmodified	_LNVLNRHHWMY_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;nc|ENSG00000165688|Q10713-2|PMPCA;CCDC47-PMPCA|1|fusion;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	MSMS	HCT116MG_D190212_S2	2	495.2060241699219	3	494.918951	1481.73502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.864	1	49.7	49.2	50.2	-0.16369								0	0	0	0.95976	1	19097	19097		1.2148	0.70888	1				19710	4791;8067	12422	12479	18917	18917					0.013424198338270799
LNVRILKQ	8	Unmodified	_LNVRILKQ_					0	0	0		ENST00000558551.1_1_14:103803061-103803187:+|nuORF	ENST00000558551.1_1_14:103803061-103803187:+|nuORF	ENST00000558551.1_1_14:103803061-103803187:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	492.3217468261719	2	492.321651	982.62875	0.24486	0.00012055	0.55286	0.00027218	0.79772	0.00039273	492.32181385317546	58.416	0.50776	58.416	58.261	58.769	0					14	9	3	0	0	0	0.87635	1	22539	22539		0.69038	0	1	39765000			19711	8803	12423	12480	18918	18918					0.1367403233081177
LNVRKAAHEAL	11	Unmodified	_LNVRKAAHEAL_					0	0	0		ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000560935.1_1_14:24652387-24652645:-|nuORF;ENST00000561379.1_1_14:24651787-24652670:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	611.3557739257812	2	611.356754	1220.69895	0.59441	0.00036339	-1.2575	-0.00076877	-0.66307	-0.00040537	611.3557159852869	53.465	0.46422	53.465	53.204	53.668	0					15	8	2	0	0	0	0.74191	1	20420	20420		2.4985	0.84587	1	15938000			19712	6076	12424	12481	18919	18919					0.09743285928607293
LNVRKGGINL	10	Unmodified	_LNVRKGGINL_					0	0	0			REV__ENSG00000080371|ENST00000261263|RAB21	REV__ENSG00000080371|ENST00000261263|RAB21	MSMS	HCT116MG_D190212_S2	2	542.3357543945312	2	542.33529	1082.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.976	1	45.875	45.375	46.375	-0.1014								0	0	0	0.87399	1	17500	17500		19.257	1.122	1		+		19713	10861	12425	12482	18920	18920					0.1180051587118669
LNVSRKGR	8	Unmodified	_LNVSRKGR_					0	0	0		ENST00000335500.8_1_17:42516078-42541999:-|nuORF	ENST00000335500.8_1_17:42516078-42541999:-|nuORF	ENST00000335500.8_1_17:42516078-42541999:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	465.2852478027344	2	465.2856	928.556647	0.07658	3.5632E-05	0.20062	9.3347E-05	0.2772	0.00012898	465.2855365320457	47.537	0.84739	47.168	46.982	47.83	-0.36907					45	28	2	0	0	0	0.87635	1	17557	17557		0.69038	0	1	12899000			19714	7187	12426	12483	18921	18921					0.08951117977096601
LNVTNGRPI	9	Unmodified	_LNVTNGRPI_					0	0	0			REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	REV__tr|U7SHJ2|U7SHJ2_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02176PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	491.7917175292969	2	492.285266	982.555979	0.1364	6.7146E-05	0.21045	0.0001036	0.34685	0.00017075	492.28530767893034	51.327	0.98841	50.977	50.629	51.618	-0.35028					46	18	3	0	0	0	0.24622	1	19318	19318		7.2892	0	1	19940000	+		19715	17680	12427	12484	18922	18922					0.06400278537375925
LNWEYRSKKRW	11	Unmodified	_LNWEYRSKKRW_					0	0	0			REV__UBASH3A|p.F459Sfs*69|1|0.42|ENSG00000160185|chr21:42434934-42434934|T/-|frameshift_variant	REV__UBASH3A|p.F459Sfs*69|1|0.42|ENSG00000160185|chr21:42434934-42434934|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	522.617919921875	3	522.616037	1564.82628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.757	1	50.443	49.943	50.943	-0.31381								0	0	0	0.96121	1	19148	19148		0.45452	0.046251	1		+		19716	18033	12428	12485	18923	18923					0.06646006802770899
LNWKFVAPAL	10	Unmodified	_LNWKFVAPAL_					0	0	0		tr|U7SZ59|U7SZ59_FUSNUSodium/prolinesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00855PE=3SV=1	tr|U7SZ59|U7SZ59_FUSNUSodium/prolinesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00855PE=3SV=1	tr|U7SZ59|U7SZ59_FUSNUSodium/prolinesymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00855PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	580.8140258789062	2	579.837134	1157.65972	0.44976	0.00026079	0.052577	3.0486E-05	0.50233	0.00029127	580.3377793523283	54.48	0.61398	54.291	53.945	54.559	-0.1894					24	11	3	0	0	0	0.76634	1	21006	21006		14.838	1.7958	1	12784000			19717	18524	12429	12486	18924	18924					0.08719185645054495
LNWKGGGF	8	Unmodified	_LNWKGGGF_					0	0	0			REV__ENST00000456101.6_1_6:109775937-109776843:-|nuORF	REV__ENST00000456101.6_1_6:109775937-109776843:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	439.7295837402344	2	439.729595	877.444637	0.27023	0.00011883	0.12604	5.5423E-05	0.39626	0.00017425	439.72964847938084	41.634	0.30863	41.565	41.396	41.705	-0.068199					13	5	3	0	0	0	0.69862	1	15751	15751		23.148	2.2772	1	21279000	+		19718	15747	12430	12487	18925	18925					0.0010126390010327668
LNYARQKLWLY	11	Unmodified	_LNYARQKLWLY_					0	0	0			REV__ENSG00000127366|ENST00000247883|TAS2R5	REV__ENSG00000127366|ENST00000247883|TAS2R5	MSMS	HCT116MG_D190212_S2	2	734.4112548828125	2	734.408986	1466.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.39	1	49.236	48.736	49.736	-0.15405								0	0	0	0.95581	1	18901	18901		3.2813	0.28607	1		+		19719	11855	12431	12488	18926	18926					0.08868987685332286
LNYEEHWYMS	10	Unmodified	_LNYEEHWYMS_					0	0	0		NAALAD2|p.K562Nfs*33|1|0.35|ENSG00000077616|chr11:90177940-90177940|A/-|frameshift_variant	NAALAD2|p.K562Nfs*33|1|0.35|ENSG00000077616|chr11:90177940-90177940|A/-|frameshift_variant	NAALAD2|p.K562Nfs*33|1|0.35|ENSG00000077616|chr11:90177940-90177940|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	686.2879028320312	2	686.287345	1370.56014	0.87938	0.0006035	-1.05	-0.00072063	-0.17067	-0.00011713	686.2869750570447	24.435	0.25921	24.166	24.03	24.289	-0.26881					16	4	5	0	0	0	0.72678	1	8618	8618		18.146	0	1	9484600			19720	9357	12432	12489	18927	18927					-0.11032044821899945
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant	REV__CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	434.7593994140625	2	434.759218	867.503883	0.064569	2.8072E-05	0.075627	3.2879E-05	0.1402	6.0952E-05	434.7591485916562	45.374	0.62648	45.374	45.244	45.87	0					26	11	4	0	0	0	0.8506	1	17190	17190		5.2307	0	1	80932000	+		19721	10088	12433	12490	18928	18928					0.06483159914273529
LPAAPWRWRWR	11	Unmodified	_LPAAPWRWRWR_					0	0	0		ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MSMS	HCT116MG_D190212_S3	3	747.912841796875	2	747.915104	1493.81566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.854	1	46.54	46.04	47.04	-0.31405								0	0	0	0.95925	1	17579	17579		1.4819	0	1				19722	6808	12434	12491	18929	18929					0.08850068939000266
LPAAVRTKR	9	Unmodified	_LPAAVRTKR_					0	0	0			REV__ENST00000521689.5_1_8:98881135-98900426:+|nuORF	REV__ENST00000521689.5_1_8:98881135-98900426:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	506.3248291015625	2	506.324725	1010.6349	0.28468	0.00014414	-0.58082	-0.00029409	-0.29614	-0.00014995	506.3243098121285	60.774	1.3927	60.774	60.543	61.936	0					47	26	2	0	0	0	0.66792	1	23416	23416		7.2892	0	1	239860000	+		19723	16242	12435	12492	18930	18930					0.13000550562321678
LPACPSLRH	9	Unmodified	_LPACPSLRH_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENST00000467594.1_1_3:52523610-52523790:+|nuORF;ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-MSMS	HCT116MG_D190212_S1	1	497.2687072753906	2	497.268561	992.52257	0.40123	0.00019952	0.20812	0.00010349	0.60936	0.00030301	497.26865755425854	26.49	0.36432	26.49	26.293	26.657	0					11	6	2	0	0	0	0.41514	1	9593	9593		21.747	1.293	1	5778200			19724	880	12436	12493	18931	18931					0.026009534938111756
LPAGRISRS	9	Unmodified	_LPAGRISRS_					0	0	0		nc|ENSG00000076716|O75487-2|GPC4;ENSG00000076716|ENST00000370828|GPC4	nc|ENSG00000076716|O75487-2|GPC4	nc|ENSG00000076716|O75487-2|GPC4	MULTI-MSMS	HCT116MG_D190212_S4	4	478.7854919433594	2	478.785433	955.556313	0.30479	0.00014593	0.012508	5.9885E-06	0.3173	0.00015192	478.785324897491	50.386	1.7285	50.027	49.517	51.246	-0.35878					84	33	5	0	0	0	0.72399	1	18782	18782		3.5965	1.019	1	195590000			19725	1339	12437	12494	18932	18932					0.0767569825721921
LPALPAMQPR	10	Unmodified	_LPALPAMQPR_					0	0	0			REV__FAM193A|p.P726Rfs*89|1|0.41|ENSG00000125386|chr4:2693828-2693828|C/-|frameshift_variant	REV__FAM193A|p.P726Rfs*89|1|0.41|ENSG00000125386|chr4:2693828-2693828|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	546.8118896484375	2	547.312969	1092.61138	0.67181	0.00036769	0.09795	5.3609E-05	0.76976	0.0004213	547.3130320633973	37.681	0.26055	37.681	37.499	37.759	0					10	4	3	0	0	0	0.3029	1	14086	14086		15.847	1.2655	1	45290000	+		19726	16807	12438	12495	18933	18933					0.0687836873348715
LPALRTAHL	9	Unmodified	_LPALRTAHL_					0	0	0		nc|ENSG00000203618|P13224|GP1BB;nc|ENSG00000203618|P13224-2|GP1BB	nc|ENSG00000203618|P13224|GP1BB	nc|ENSG00000203618|P13224|GP1BB	MSMS	HCT116MG_D190212_S1	1	496.3044128417969	2	496.306001	990.597449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.003	1	52.003	51.503	52.503	0								0	0	0	0.76759	1	19879	19879		9.3831	0.63772	1				19727	9607	12439	12496	18934	18934					0.10177459296676261
LPAPGHAA	8	Unmodified	_LPAPGHAA_					0	0	0		ENST00000369982.4_1_X:153238261-153247514:+|nuORF	ENST00000369982.4_1_X:153238261-153247514:+|nuORF	ENST00000369982.4_1_X:153238261-153247514:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	367.2030334472656	2	367.203213	732.391873	0.031414	1.1535E-05	-0.23538	-8.6433E-05	-0.20397	-7.4898E-05	367.20307722181195	31.5	0.31114	31.252	31.095	31.406	-0.24883					8	5	2	0	0	0	0.84415	1	11635	11635		6.3541	0	1	18356000			19728	7420	12440	12497	18935	18935					0.014973058372675041
LPAPPIVVTLA	11	Unmodified	_LPAPPIVVTLA_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	HCT116MG_D190212_S3	3	364.23284912109375	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.723	1	59.465	58.965	59.965	-0.25832								0	0	0	0.96111	1	22751	22751		0.50596	0.23694	1				19729	3585;9166	12441	12498	18936	18936					0.13852936584999043
LPASSGCWWRL	11	Unmodified	_LPASSGCWWRL_					0	0	0		ENST00000312053.8_3_19:6926419-6926455:+|nuORF	ENST00000312053.8_3_19:6926419-6926455:+|nuORF	ENST00000312053.8_3_19:6926419-6926455:+|nuORF	MSMS	HCT116MG_D190212_S2	2	638.1005249023438	2	638.318783	1274.62301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.849	1	37.756	37.256	38.256	-0.09301								0	0	0	0.94416	1	14201	14201		9.3831	0.63772	1				19730	7063	12442	12499	18937	18937					-0.0033143424318495818
LPDGPELHPG	10	Unmodified	_LPDGPELHPG_					0	0	0			REV__ENST00000539851.5_1_11:64052347-64052482:+|nuORF	REV__ENST00000539851.5_1_11:64052347-64052482:+|nuORF	MSMS	HCT116MG_D190212_S4	4	516.2634887695312	2	516.261456	1030.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.014	1	36.629	36.129	37.129	-0.38486								0	0	0	0.81484	1	13567	13567		26.884	0.61551	1		+		19731	16358	12443	12500	18938	18938					-0.005674204534898308
LPDHSYHLSFL	11	Unmodified	_LPDHSYHLSFL_					0	0	0			REV__ENST00000496443.5_1_2:220110461-220110827:+|nuORF	REV__ENST00000496443.5_1_2:220110461-220110827:+|nuORF	MSMS	HCT116MG_D190212_S4	4	664.8369140625	2	664.83532	1327.65609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.494	1	32.114	31.614	32.614	-0.37924								0	0	0	0.93552	1	11837	11837		13.906	3.1065	1		+		19732	15908	12444	12501	18939	18939					0.005364710805224604
LPDKESTLP	9	Unmodified	_LPDKESTLP_					0	0	0			REV__nc|ENSG00000204406|Q9P267-2|MBD5	REV__nc|ENSG00000204406|Q9P267-2|MBD5	MSMS	HCT116MG_D190212_S4	4	500.2707214355469	2	500.27149	998.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.158	1	26.847	26.347	27.347	-0.3114								0	0	0	0.50556	1	9709	9709		28.487	1.6032	1		+		19733	14195	12445	12502	18940	18940					0.029103304864861457
LPDLLPFDP	9	Unmodified	_LPDLLPFDP_					0	0	0		nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-6|NLRC5	MULTI-SECPEP	HCT116MG_D190212_S2	2	514.3167114257812	2	513.778951	1025.54335	0.19062	9.7937E-05	0.076665	3.9389E-05	0.26729	0.00013733	514.280176518666	26.411	0.36198	26.05	25.818	26.18	-0.36164					12	6	3	0	0	0	0.24195	1	9483	9483		7.9102	7.9102	1	9286500			19734	9478	12446	12503	18941	18941					0.03159822354473363
LPDPILKSPF	10	Unmodified	_LPDPILKSPF_					0	0	0			REV__ENST00000311413.4_1_11:119205698-119205764:+|nuORF	REV__ENST00000311413.4_1_11:119205698-119205764:+|nuORF	MSMS	HCT116MG_D190212_S3	3	376.2228698730469	3	376.221742	1125.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.7	1	46.386	45.886	46.886	-0.31405								0	0	0	0.93576	1	17517	17517		4.1895	1.1172	1		+		19735	14834	12447	12504	18942	18942					0.08560059688284127
LPDSLIAP	8	Unmodified	_LPDSLIAP_					0	0	0		ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.V645Rfs*84|1|0.4|ENSG00000175727|chr12:122135561-122135562|-/C|frameshift_variant	ENSG00000175727|ENST00000319080|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	MSMS	HCT116MG_D190212_S1	1	413.2381286621094	2	413.239461	824.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.124	1	43.124	42.624	43.624	0								0	0	0	0.8837	1	16284	16284		5.7604	0.52976	1				19736	5393	12448	12505	18943	18943					0.045115951201864846
LPDYICTI	8	Unmodified	_LPDYICTI_					0	0	0			REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MSMS	HCT116MG_D190212_S4	4	469.7104797363281	2	469.238604	936.462655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.902	1	29.545	29.045	30.045	-0.3571								0	0	0	0.8217	1	10818	10818		20.871	0	1		+		19737	13782	12449	12506	18944	18944					-0.008117819600670373
LPEAPLSEVP	10	Unmodified	_LPEAPLSEVP_					0	0	0			REV__ENST00000530994.5_1_11:118515264-118527530:+|nuORF	REV__ENST00000530994.5_1_11:118515264-118527530:+|nuORF	MSMS	HCT116MG_D190212_S4	4	526.7484130859375	2	526.28714	1050.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.77	1	31.394	30.894	31.894	-0.37529								0	0	0	0.78574	1	11544	11544		30.637	10.183	1		+		19738	16316	12450	12507	18945	18945					0.03646903520575506
LPEFYNLLP	9	Unmodified	_LPEFYNLLP_					0	0	0			REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	MSMS	HCT116MG_D190212_S4	4	553.2977905273438	2	553.30005	1104.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.995	1	56.694	56.194	57.194	-0.3004								0	0	0	0.7676	1	21381	21381		9.3474	4.1168	1		+		19739	11909	12451	12508	18946	18946					0.037437977628542285
LPEHRRARRRV	11	Unmodified	_LPEHRRARRRV_					0	0	0			REV__ENST00000575334.5_3_16:4463394-4466616:-|nuORF	REV__ENST00000575334.5_3_16:4463394-4466616:-|nuORF	MSMS	HCT116MG_D190212_S4	4	723.4380493164062	2	723.437267	1444.85998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.865	1	51.519	51.019	52.019	-0.34538								0	0	0	0.96141	1	19316	19316		0.35063	0	1		+		19740	16598	12452	12509	18947	18947					0.15534473085176614
LPELMWVY	8	Unmodified	_LPELMWVY_					0	0	0		ENST00000498780.5_1_2:201862166-201888732:-|nuORF;nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	MSMS	HCT116MG_D190212_S3	3	525.7683715820312	2	525.770071	1049.52559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.612	1	36.311	35.811	36.811	-0.30113								0	0	0	0.8837	1	13534	13534		14.582	1.5392	1				19741	4261	12453	12510	18948	18948					0.0028078382797502854
LPELTESPYL	10	Unmodified	_LPELTESPYL_					0	0	0			REV__ENST00000327247.9_1_1:155210492-155214452:-|nuORF	REV__ENST00000327247.9_1_1:155210492-155214452:-|nuORF	MSMS	HCT116MG_D190212_S2	2	581.3076782226562	2	581.305529	1160.59651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.5	1	51.317	50.817	51.817	-0.18369								0	0	0	0.86471	1	19761	19761		20.454	1.1966	1		+		19742	14910	12454	12511	18949	18949					0.02263155346486201
LPEMDEPDP	9	Unmodified	_LPEMDEPDP_					0	0	0			REV__nc|ENSG00000100490|Q00532-3|CDKL1	REV__nc|ENSG00000100490|Q00532-3|CDKL1	MULTI-SECPEP	HCT116MG_D190212_S2	2	1042.52099609375	1	1042.43975	1041.43248	0.98816	0.0010301	-0.75948	-0.00079171	0.22869	0.00023839	1042.4386115066359	44.785	0.31148	44.7	44.535	44.846	-0.084801					14	5	3	0	0	0	0.25445	1	16979	16979		4.756	2.9118	1	53514000	+		19743	11090	12455	12512	18950	18950					-0.0865818541592489
LPEMLIKP	8	Unmodified	_LPEMLIKP_					0	0	0		ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	MSMS	HCT116MG_D190212_S3	3	470.7796936035156	2	470.780439	939.546325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.339	1	12.401	11.901	12.901	0.06246								0	0	0	0.8837	1	3841	3841		2.5775	1.7838	1				19744	4746	12456	12513	18951	18951					0.0741337420763557
LPEQAEDHVP	10	Unmodified	_LPEQAEDHVP_					0	0	0		ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	MSMS	HCT116MG_D190212_S4	4	567.775146484375	2	567.774928	1133.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.473	1	34.088	33.588	34.588	-0.38558								0	0	0	0.82636	1	12589	12589		25.399	0.40835	1				19745	5904	12457	12514	18952	18952					-0.026123566329715686
LPERKKIVIK	10	Unmodified	_LPERKKIVIK_					0	0	0			REV__ENSG00000147654|ENST00000337573|EBAG9	REV__ENSG00000147654|ENST00000337573|EBAG9	MSMS	HCT116MG_D190212_S2	2	612.4857177734375	2	612.41354	1222.81253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.823	1	39.75	39.25	40.25	-0.072838								0	0	0	0.95351	1	15001	15001		3.9444	2.1002	1		+		19746	12522	12458	12515	18953	18953					0.2100338104162347
LPEVSGEY	8	Unmodified	_LPEVSGEY_					0	0	0		ENST00000595146.1_1_19:58721292-58721499:+|nuORF	ENST00000595146.1_1_19:58721292-58721499:+|nuORF	ENST00000595146.1_1_19:58721292-58721499:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	893.4263305664062	1	893.42509	892.417813	0.99156	0.00088589	0.57582	0.00051445	1.5674	0.0014003	893.4253056101662	42.11	0.36212	42.042	41.861	42.223	-0.068199					11	6	3	0	0	0	0.23352	1	15933	15933		67.035	13.46	1	34123000			19747	9059	12459	12516	18954	18954					-0.03269889501746093
LPEVSGEY	8	Unmodified	_LPEVSGEY_					0	0	0		ENST00000595146.1_1_19:58721292-58721499:+|nuORF	ENST00000595146.1_1_19:58721292-58721499:+|nuORF	ENST00000595146.1_1_19:58721292-58721499:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	893.424560546875	1	893.42509	892.417813	1.0321	0.00092209	-0.20049	-0.00017912	0.8316	0.00074297	893.4245873209172	42.35	0.31298	42.046	41.883	42.196	-0.30352					11	5	3	0	0	0	0.23352	1	15779	15779		67.035	10.494	1	8227900			19748	9059	12459	12516	18955	18955					-0.03269889501746093
LPEVSRQQP	9	Unmodified	_LPEVSRQQP_					0	0	0			REV__ENST00000274979.12_2_2:242163924-242164206:+|nuORF	REV__ENST00000274979.12_2_2:242163924-242164206:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.784912109375	2	527.288005	1052.56146	0.067107	3.5385E-05	-1.7161	-0.00090486	-1.649	-0.00086948	527.2871992779617	30.146	0.25796	29.861	29.718	29.976	-0.28453					7	4	2	0	0	0	0.22781	1	11071	11071		3.9444	0	1	26927000	+		19749	14707	12460	12517	18956	18956					0.03727957329192577
LPFKKKYQEV	10	Unmodified	_LPFKKKYQEV_					0	0	0			REV__CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant	REV__CUL2|p.Q667Hfs*2|1|0.37|ENSG00000108094|chr10:35011952-35011953|TC/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	427.2515869140625	3	427.251813	1278.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.301	1	60.034	59.534	60.534	-0.26761								0	0	0	0.96836	1	22717	22717		0.62683	0	1		+		19750	10310	12461	12518	18957	18957					0.1053910901666768
LPFMQLVE	8	Unmodified	_LPFMQLVE_					0	0	0			REV__ENST00000302516.9_1_16:70607775-70608060:+|nuORF	REV__ENST00000302516.9_1_16:70607775-70608060:+|nuORF	MSMS	HCT116MG_D190212_S4	4	488.76434326171875	2	488.762246	975.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.796	1	23.54	23.04	24.04	-0.25633								0	0	0	0.85589	1	8351	8351		18.135	2.2878	1		+		19751	14797	12462	12519	18958	18958					0.021204973109320235
LPFREKGIL	9	Unmodified	_LPFREKGIL_					0	0	0		ENST00000310421.4_1_8:67547307-67547337:-|nuORF	ENST00000310421.4_1_8:67547307-67547337:-|nuORF	ENST00000310421.4_1_8:67547307-67547337:-|nuORF	MSMS	HCT116MG_D190212_S3	3	358.2223205566406	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.443	1	58.174	57.674	58.674	-0.26932								0	0	0	0.76991	1	22233	22233		1.1933	0	1				19752	7052	12463	12520	18959	18959					0.11110899127993434
LPFREKGIL	9	Unmodified	_LPFREKGIL_					0	0	0		ENST00000310421.4_1_8:67547307-67547337:-|nuORF	ENST00000310421.4_1_8:67547307-67547337:-|nuORF	ENST00000310421.4_1_8:67547307-67547337:-|nuORF	MSMS	HCT116MG_D190212_S4	4	358.2220764160156	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.405	1	58.116	57.616	58.616	-0.28879								0	0	0	0.76991	1	21951	21951		1.1933	0.41681	1				19753	7052	12463	12520	18960	18960					0.11110899127993434
LPFRVGVP	8	Unmodified	_LPFRVGVP_					0	0	0		SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	442.76995849609375	2	442.771263	883.527973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.564	1	31.194	30.694	31.694	-0.37026								0	0	0	0.86899	1	11461	11461		17.087	5.9721	1				19754	1799	12464	12521	18961	18961					0.08155000347949226
LPFTPRTLK	9	Unmodified	_LPFTPRTLK_					0	0	0		nc|ENSG00000042317|Q9P0W8-3|SPATA7;ENST00000556666.5_1_14:88883017-88904763:+|nuORF;nc|ENSG00000042317|Q9P0W8-2|SPATA7;ENSG00000042317|ENST00000393545|SPATA7;ENST00000553626.5_1_14:88852162-88894100:+|nuORF	nc|ENSG00000042317|Q9P0W8-3|SPATA7	nc|ENSG00000042317|Q9P0W8-3|SPATA7	MSMS	HCT116MG_D190212_S1	1	358.2222900390625	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.299	1	57.299	56.799	57.799	0								0	0	0	0.76991	1	22046	22046		1.1933	0	1				19755	1009	12465	12522	18962	18962					0.11110899127993434
LPFTRRAG	8	Unmodified	_LPFTRRAG_					0	0	0		ENST00000488315.5_1_7:149570449-149570881:-|nuORF	ENST00000488315.5_1_7:149570449-149570881:-|nuORF	ENST00000488315.5_1_7:149570449-149570881:-|nuORF	MSMS	HCT116MG_D190212_S4	4	459.2680358886719	2	459.269419	916.524284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.254	1	43.88	43.38	44.38	-0.37373								0	0	0	0.8837	1	16297	16297		2.3027	0.24298	1				19756	8314	12466	12523	18963	18963					0.06268330574084757
LPGAPAPACL	10	Unmodified	_LPGAPAPACL_					0	0	0			REV__ENST00000487088.5_1_9:5832547-5832913:-|nuORF	REV__ENST00000487088.5_1_9:5832547-5832913:-|nuORF	MSMS	HCT116MG_D190212_S3	3	455.2480163574219	2	455.246763	908.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.53	1	34.233	33.733	34.733	-0.29707								0	0	0	0.93576	1	12713	12713		7.9102	0	1		+		19757	16000	12467	12524	18964	18964					0.021073439966812657
LPGASAELSS	10	Unmodified	_LPGASAELSS_					0	0	0			REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF	REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	931.4729614257812	1	931.473103	930.465826	0.82857	0.00077179	-0.42657	-0.00039734	0.402	0.00037445	931.4726515011007	57.697	0.31076	57.697	57.464	57.775	0					9	5	2	0	0	0	0.84919	1	22218	22218		7.9102	1.5561	1	8576900	+		19758	11367	12468	12525	18965	18965					-0.0021881558170662174
LPGDKSKAFD	10	Unmodified	_LPGDKSKAFD_					0	0	0		ENST00000515685.1_1_17:49075803-49079083:-|nuORF;ENST00000513827.5_1_17:49073859-49079083:-|nuORF;SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9	ENST00000515685.1_1_17:49075803-49079083:-|nuORF	ENST00000515685.1_1_17:49075803-49079083:-|nuORF	MSMS	HCT116MG_D190212_S3	3	539.2821044921875	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.176	1	43.869	43.369	44.369	-0.30759								0	0	0	0.90475	1	16506	16506		14.838	0.93222	1				19759	862	12469	12526	18966	18966					0.01501135235048423
LPGHHVPTAP	10	Unmodified	_LPGHHVPTAP_					0	0	0		ENST00000489226.5_1_9:130485405-130489873:+|nuORF	ENST00000489226.5_1_9:130485405-130489873:+|nuORF	ENST00000489226.5_1_9:130485405-130489873:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	512.7257690429688	2	513.279983	1024.54541	0.34541	0.00017729	3.2103	0.0016478	3.5558	0.0018251	513.2818831393811	32.642	0.20808	32.357	32.248	32.456	-0.28511					6	3	2	0	0	0	0.30027	1	12007	12007		7.2892	0	1	2221400			19760	8324	12470	12527	18967	18967					0.03412295882935723
LPGISILEAPQ	11	Unmodified	_LPGISILEAPQ_					0	0	0		KRTAP10-5|p.C84Afs*285|1|0.37|ENSG00000241123|chr21:44580330-44580330|G/-|frameshift_variant	KRTAP10-5|p.C84Afs*285|1|0.37|ENSG00000241123|chr21:44580330-44580330|G/-|frameshift_variant	KRTAP10-5|p.C84Afs*285|1|0.37|ENSG00000241123|chr21:44580330-44580330|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	569.32958984375	2	569.329339	1136.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.149	1	37.848	37.348	38.348	-0.30137								0	0	0	0.9387	1	14122	14122		12.241	0	1				19761	9274	12471	12528	18968	18968					0.08126854337319855
LPGLNITCTFH	11	Unmodified	_LPGLNITCTFH_					0	0	0		nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;ENST00000539695.5_1_12:121600150-121613220:+|nuORF;nc|ENSG00000089041|Q99572-7|P2RX7;ENST00000539606.5_1_12:121592718-121615069:+|nuORF;nc|ENSG00000089041|Q99572-4|P2RX7;nc|ENSG00000089041|Q99572-8|P2RX7;ENST00000538011.5_1_12:121592718-121622602:+|nuORF	nc|ENSG00000089041|Q99572-2|P2RX7	nc|ENSG00000089041|Q99572-2|P2RX7	MSMS	HCT116MG_D190212_S4	4	608.3132934570312	2	608.313166	1214.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.621	1	33.237	32.737	33.737	-0.38426								0	0	0	0.95113	1	12246	12246		5.7319	0.43497	1				19762	1508	12472	12529	18969	18969					0.013057436626695562
LPGNGDVY	8	Unmodified	_LPGNGDVY_					0	0	0		ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;PPFIBP1|p.R282Kfs*16|1|0.05|ENSG00000110841|chr12:27656665-27656666|-/A|frameshift_variant;PPFIBP1|p.A311Lfs*5|1|0.38|ENSG00000110841|chr12:27660904-27660904|A/-|frameshift_variant;nc|ENSG00000110841|Q86W92-5|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	MSMS	HCT116MG_D190212_S2	2	417.7033386230469	2	417.703243	833.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.831	1	21.446	20.946	21.946	-0.38503								0	0	0	0.70483	1	7704	7704		30.225	0	1				19763	2265	12473	12530	18970	18970					-0.03142738953386015
LPGPGPSG	8	Unmodified	_LPGPGPSG_					0	0	0		ENST00000266087.11_1_22:32870816-32870993:+|nuORF	ENST00000266087.11_1_22:32870816-32870993:+|nuORF	ENST00000266087.11_1_22:32870816-32870993:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	681.357421875	1	681.356616	680.34934	0.62719	0.00042734	0.14958	0.00010192	0.77677	0.00052926	681.356761365534	26.599	0.62393	26.298	25.869	26.493	-0.30087					14	11	2	0	0	0	0.32897	1	9492	9492		56.541	6.8724	1	2398000			19764	6904	12474	12531	18971	18971					-0.0036208929094527775
LPGPRKPLVP	10	Unmodified	_LPGPRKPLVP_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2;CCNA2|p.P273Qfs*3|1|0.35|ENSG00000145386|chr4:121819556-121819556|G/-|frameshift_variant	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-SECPEP	HCT116MG_D190212_S1	1	358.1496887207031	3	358.565843	1072.6757	-0.076066	-2.7275E-05	0.48654	0.00017446	0.41048	0.00014718	358.5659156104946	26.631	0.20811	26.631	26.501	26.709	0					5	3	2	0	0	0	0.31123	1	9654	9654		0.77653	0.50751	1	4630900			19765	3908	12475	12532	18972	18972					0.14226891881935444
LPGRGEGLFHH	11	Unmodified	_LPGRGEGLFHH_					0	0	0		ENST00000361757.7_1_19:1109529-1111037:-|nuORF;ENST00000586109.1_1_19:1109529-1111037:-|nuORF	ENST00000361757.7_1_19:1109529-1111037:-|nuORF	ENST00000361757.7_1_19:1109529-1111037:-|nuORF	MSMS	HCT116MG_D190212_S4	4	610.1845703125	2	610.320171	1218.62579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.156	1	24.876	24.376	25.376	-0.27958								0	0	0	0.94416	1	8901	8901		9.3831	0.63772	1				19766	7363	12476	12533	18973	18973					0.025221572059763275
LPGSVKND	8	Unmodified	_LPGSVKND_					0	0	0			REV__ENST00000504430.5_1_5:36961623-36995905:+|nuORF	REV__ENST00000504430.5_1_5:36961623-36995905:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	829.4404907226562	1	829.441409	828.434132	0.96779	0.00080272	-1.6945	-0.0014055	-0.72669	-0.00060275	829.4398431829176	46.099	0.31062	46.099	45.975	46.285	0					6	5	2	0	0	0	0.81821	1	17497	17497		9.3474	1.4373	1	36132000	+		19767	12990	12477	12534	18974	18974					0.013052364549935191
LPGTAAVVFF	10	Unmodified	_LPGTAAVVFF_					0	0	0		ENST00000339438.10_1_1:115292511-115292601:-|nuORF	ENST00000339438.10_1_1:115292511-115292601:-|nuORF	ENST00000339438.10_1_1:115292511-115292601:-|nuORF	MSMS	HCT116MG_D190212_S4	4	511.2870178222656	2	511.289485	1020.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.506	1	25.226	24.726	25.726	-0.27958								0	0	0	0.80241	1	9042	9042		28.487	13.649	1				19768	7206	12478	12535	18975	18975					0.054958324539938985
LPHCFFLGT	9	Unmodified	_LPHCFFLGT_					0	0	0			REV__ENSG00000079112|ENST00000027335|CDH17	REV__ENSG00000079112|ENST00000027335|CDH17	MULTI-MSMS	HCT116MG_D190212_S4	4	518.2625732421875	2	517.760038	1033.50552	0.35958	0.00018618	1.7423	0.00090211	2.1019	0.0010883	517.7607676206009	36.589	0.46448	36.204	35.919	36.383	-0.38486					14	8	2	0	0	0	0.49914	1	13351	13351		16.942	2.3606	1	3533700	+		19769	10846	12479	12536	18976	18976					-0.00988967111970851
LPHFRILLFI	10	Unmodified	_LPHFRILLFI_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MSMS	HCT116MG_D190212_S3	3	634.9794311523438	2	634.897526	1267.7805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.126	1	46.812	46.312	47.312	-0.31405								0	0	0	0.96291	1	17689	17689		1.8442	0	1		+		19770	14151	12480	12537	18977	18977					0.15732013358501717
LPHHLVLARH	10	Unmodified	_LPHHLVLARH_					0	0	0			REV__ENST00000310771.8_1_7:99949952-99950487:+|nuORF	REV__ENST00000310771.8_1_7:99949952-99950487:+|nuORF	MSMS	HCT116MG_D190212_S1	1	596.6898803710938	2	596.856724	1191.69889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.511	1	21.511	21.011	22.011	0								0	0	0	0.95179	1	7571	7571		4.3292	0	1		+		19771	14830	12481	12538	18978	18978					0.11071330719255457
LPHNRIFTV	9	Unmodified	_LPHNRIFTV_					0	0	0			REV__ENSG00000075223|ENST00000265361|SEMA3C	REV__ENSG00000075223|ENST00000265361|SEMA3C	MSMS	HCT116MG_D190212_S2	2	366.2121887207031	3	366.213581	1095.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.279	1	32.049	31.549	32.549	-0.23009								0	0	0	0.76991	1	11938	11938		1.1933	0.12188	1		+		19772	10805	12482	12539	18979	18979					0.07492844325406622
LPHRQSKKI	9	Unmodified	_LPHRQSKKI_					0	0	0			REV__KDM4B|p.R611Q|1|0.24|ENSG00000127663|chr19:5131933-5131933|G/A|missense_variant	REV__KDM4B|p.R611Q|1|0.24|ENSG00000127663|chr19:5131933-5131933|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	369.1993103027344	3	369.564614	1105.67201	-0.31047	-0.00011474	0.21548	7.9633E-05	-0.094994	-3.5106E-05	369.5647313151561	32.248	0.20801	32.248	32.066	32.274	0					5	3	2	0	0	0	0.26893	1	11857	11857		1.1933	0	1	4850700	+		19773	16923	12483	12540	18980	18980					0.12340222108105081
LPIITYRRKLE	11	Unmodified	_LPIITYRRKLE_					0	0	0			REV__SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant	REV__SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	701.0513305664062	2	701.432461	1400.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.062	1	51.878	51.378	52.378	-0.18369								0	0	0	0.94012	1	19990	19990		11.495	3.3392	1		+		19774	17531	12484	12541	18981	18981					0.16597847236448615
LPIITYRRKLE	11	Unmodified	_LPIITYRRKLE_					0	0	0			REV__SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant	REV__SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	701.9159545898438	2	701.432461	1400.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.386	1	52.079	51.579	52.579	-0.30639								0	0	0	0.94538	1	19802	19802		8.7454	2.0222	1		+		19775	17531	12484	12541	18982	18982					0.16597847236448615
LPIITYRRKLE	11	Unmodified	_LPIITYRRKLE_					0	0	0			REV__SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant	REV__SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	701.435546875	2	701.432461	1400.85037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.626	1	52.319	51.819	52.819	-0.30639								0	0	0	0.95196	1	19899	19899		5.2969	0.39987	1		+		19776	17531	12484	12541	18983	18983					0.16597847236448615
LPIKLTIKKTL	11	Unmodified	_LPIKLTIKKTL_					0	0	0			REV__IMPDH2|p.T63I|1|0.46|ENSG00000178035|chr3:49028492-49028492|G/A|missense_variant	REV__IMPDH2|p.T63I|1|0.46|ENSG00000178035|chr3:49028492-49028492|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	423.296630859375	3	423.295241	1266.86389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.408	1	40.029	39.529	40.529	-0.37828								0	0	0	0.95581	1	14823	14823		1.3296	0.82369	1		+		19777	16901	12485	12542	18984	18984					0.24113705015679443
LPILYLNGVVG	11	Unmodified	_LPILYLNGVVG_					0	0	0		nc|ENSG00000151208|Q8TDM6-3|DLG5;DLG5|p.P861Qfs*32|1|0.31|ENSG00000151208|chr10:77821902-77821902|G/-|frameshift_variant;DLG5|p.P1167Rfs*16|1|0.62|ENSG00000151208|chr10:77819921-77819921|G/-|frameshift_variant;nc|ENSG00000151208|Q8TDM6-2|DLG5;DLG5|p.F1661Ifs*9|1|0.12|ENSG00000151208|chr10:77805849-77805850|-/C|frameshift_variant;ENSG00000151208|ENST00000372391|DLG5	nc|ENSG00000151208|Q8TDM6-3|DLG5	nc|ENSG00000151208|Q8TDM6-3|DLG5	MULTI-SECPEP	HCT116MG_D190212_S3	3	386.2359619140625	3	386.569142	1156.6856	-0.16421	-6.348E-05	2.7891	0.0010782	2.6249	0.0010147	386.5703867919939	34.504	0.25965	34.207	34.025	34.284	-0.29707					6	4	2	0	0	0	0.36463	1	12714	12714		7.9454	1.711	1	7361600			19778	684	12486	12543	18985	18985					0.11352035096660984
LPIRILRLAV	10	Unmodified	_LPIRILRLAV_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MSMS	HCT116MG_D190212_S3	3	582.4008178710938	2	582.402976	1162.7914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.514	1	58.245	57.745	58.745	-0.26932								0	0	0	0.96911	1	22261	22261		0.45834	0	1		+		19779	11053	12487	12544	18986	18986					0.21651415732776513
LPITIEML	8	Unmodified	_LPITIEML_					0	0	0		ENST00000493669.2_1_1:28733953-28817463:+|nuORF;nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	MSMS	HCT116MG_D190212_S4	4	465.2708740234375	2	465.272447	928.530341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.473	1	39.093	38.593	39.593	-0.38055								0	0	0	0.8837	1	14504	14504		10.183	3.8293	1				19780	6322	12488	12545	18987	18987					0.06321667970735234
LPIYEEFNA	9	Unmodified	_LPIYEEFNA_					0	0	0			REV__MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	REV__MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	548.90625	2	548.27149	1094.52843	0.65582	0.00035957	-0.82806	-0.000454	-0.17224	-9.4433E-05	548.770132741565	20.539	0.31251	20.539	20.435	20.748	0					6	5	2	0	0	0	0.25723	1	7219	7219		4.3292	0	1	1686600	+		19781	11570	12489	12546	18988	18988					-0.015056695135399423
LPKAFHPLP	9	Unmodified	_LPKAFHPLP_					0	0	0		ENST00000561871.1_2_15:42565606-42565849:+|nuORF	ENST00000561871.1_2_15:42565606-42565849:+|nuORF	ENST00000561871.1_2_15:42565606-42565849:+|nuORF	MSMS	HCT116MG_D190212_S4	4	510.305908203125	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.092	1	45.72	45.22	46.22	-0.37206								0	0	0	0.76877	1	17024	17024		5.2307	0	1				19782	8820	12490	12547	18989	18989					0.08783244927803935
LPKFINMV	8	Unmodified	_LPKFINMV_					0	0	0			REV__ENST00000544306.5_1_2:11264812-11272140:-|nuORF	REV__ENST00000544306.5_1_2:11264812-11272140:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	481.7693176269531	2	481.280606	960.546659	0.28621	0.00013775	-0.30177	-0.00014524	-0.015562	-7.4895E-06	481.28057790052605	46.33	0.41292	46.33	46.13	46.543	0					10	7	2	0	0	0	0.29766	1	17510	17510		9.3474	0	1	6662000	+		19783	15688	12491	12548	18990	18990					0.06480793927494233
LPKGRKQRRKK	11	Unmodified	_LPKGRKQRRKK_					0	0	0		ENST00000447250.1_2_6:19804550-19804649:-|nuORF	ENST00000447250.1_2_6:19804550-19804649:-|nuORF	ENST00000447250.1_2_6:19804550-19804649:-|nuORF	MSMS	HCT116MG_D190212_S4	4	698.409912109375	2	697.962586	1393.91062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.317	1	31.938	31.438	32.438	-0.37924								0	0	0	0.96141	1	11765	11765		0.35063	0.043601	1				19784	7959	12492	12549	18991	18991					0.22942002410195528
LPKKKIYKKK	10	Unmodified	_LPKKKIYKKK_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-3|PHF8	REV__nc|ENSG00000172943|Q9UPP1-3|PHF8	MSMS	HCT116MG_D190212_S1	1	637.439208984375	2	637.439558	1272.86456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.537	1	27.537	27.037	28.037	0								0	0	0	0.96377	1	9996	9996		1.6526	0	1		+		19785	17215	12493	12550	18992	18992					0.23904544455376708
LPKLIDDV	8	Unmodified	_LPKLIDDV_					0	0	0			REV__YLPM1|p.P1826L|1|0.42|ENSG00000119596|chr14:74812757-74812757|C/T|missense_variant	REV__YLPM1|p.P1826L|1|0.42|ENSG00000119596|chr14:74812757-74812757|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	456.79193115234375	2	456.773668	911.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.662	1	51.662	51.162	52.162	0								0	0	0	0.79325	1	19744	19744		23.148	0	1		+		19786	18061	12494	12551	18993	18993					0.07347839700037184
LPKLLLSIKW	10	Unmodified	_LPKLLLSIKW_					0	0	0		ENST00000481749.5_1_3:138374233-138426144:-|nuORF;PIK3CB|p.T930Lfs*62|1|0.47|ENSG00000051382|chr3:138663914-138663914|T/-|frameshift_variant;ENSG00000051382|ENST00000674063|PIK3CB	ENST00000481749.5_1_3:138374233-138426144:-|nuORF	ENST00000481749.5_1_3:138374233-138426144:-|nuORF	MSMS	HCT116MG_D190212_S1	1	606.1661987304688	2	605.899734	1209.78492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.798	1	21.798	21.298	22.298	0								0	0	0	0.95351	1	7686	7686		3.9444	2.4625	1				19787	1057	12495	12552	18994	18994					0.18841477781393223
LPKLNNLYLRL	11	Unmodified	_LPKLNNLYLRL_					0	0	0		RASGRP4|p.P509Hfs*13|1|0.43|ENSG00000171777|chr19:38412940-38412940|G/-|frameshift_variant;nc|ENSG00000171777|Q8TDF6-7|RASGRP4;nc|ENSG00000171777|Q8TDF6-8|RASGRP4;ENST00000592322.5_1_19:38901850-38916815:-|nuORF;nc|ENSG00000171777|Q8TDF6-2|RASGRP4;ENSG00000171777|ENST00000615439|RASGRP4	RASGRP4|p.P509Hfs*13|1|0.43|ENSG00000171777|chr19:38412940-38412940|G/-|frameshift_variant	RASGRP4|p.P509Hfs*13|1|0.43|ENSG00000171777|chr19:38412940-38412940|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	452.9483642578125	3	452.950245	1355.82891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.716	1	55.716	55.216	56.216	0								0	0	0	0.95665	1	21402	21402		2.8433	0.93691	1				19788	5210	12496	12553	18995	18995					0.1652246220771758
LPKVPNLP	8	Unmodified	_LPKVPNLP_					0	0	0		CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS	CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant	CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	439.2774658203125	2	439.278921	876.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.503	1	47.188	46.688	47.688	-0.31525								0	0	0	0.8837	1	17841	17841		6.3541	0	1				19789	314	12497	12554	18996	18996					0.10007867145122873
LPKYTIIKFFQ	11	Unmodified	_LPKYTIIKFFQ_					0	0	0		ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1	ENSG00000182568|ENST00000338745|SATB1	ENSG00000182568|ENST00000338745|SATB1	MSMS	HCT116MG_D190212_S1	1	699.4153442382812	2	699.413206	1396.81186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.528	1	44.528	44.028	45.028	0								0	0	0	0.9465	1	16848	16848		8.1555	1.9637	1				19790	5675	12498	12555	18997	18997					0.12932541601958292
LPLALRLAKWF	11	Unmodified	_LPLALRLAKWF_					0	0	0			REV__nc|ENSG00000196083|Q9NPH3-5|IL1RAP	REV__nc|ENSG00000196083|Q9NPH3-5|IL1RAP	MSMS	HCT116MG_D190212_S2	2	664.3707885742188	2	664.416083	1326.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.578	1	58.408	57.908	58.908	-0.1703								0	0	0	0.9598	1	22643	22643		1.1933	0.735	1		+		19791	17257	12499	12556	18998	18998					0.16727684904230955
LPLALTCL	8	Unmodified	_LPLALTCL_					0	0	0		ENST00000519738.5_1_8:37333381-37386627:-|nuORF	ENST00000519738.5_1_8:37333381-37386627:-|nuORF	ENST00000519738.5_1_8:37333381-37386627:-|nuORF	MSMS	HCT116MG_D190212_S4	4	422.25323486328125	2	422.254057	842.493561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.322	1	43.948	43.448	44.448	-0.37373								0	0	0	0.8837	1	16325	16325		0.79363	0	1				19792	8552	12500	12557	18999	18999					0.06601416144792438
LPLCVVPL	8	Unmodified	_LPLCVVPL_					0	0	0			REV__ENST00000496920.1_1_8:27238201-27253644:+|nuORF	REV__ENST00000496920.1_1_8:27238201-27253644:+|nuORF	MSMS	HCT116MG_D190212_S3	3	427.2637023925781	2	427.264425	852.514297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.435	1	62.204	61.704	62.704	-0.23129								0	0	0	0.8837	1	23850	23850		0.79363	0	1		+		19793	16094	12501	12558	19000	19000					0.08214006524474371
LPLFAYRWVAR	11	Unmodified	_LPLFAYRWVAR_					0	0	0		ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	MSMS	HCT116MG_D190212_S4	4	696.4014282226562	2	696.400964	1390.78738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.302	1	39.923	39.423	40.423	-0.37828								0	0	0	0.95581	1	14780	14780		3.2813	0	1				19794	3607	12502	12559	19001	19001					0.10761326239048685
LPLGRRPSML	10	Unmodified	_LPLGRRPSML_					0	0	0			REV__ENST00000505849.5_1_1:1324040-1326969:-|nuORF	REV__ENST00000505849.5_1_1:1324040-1326969:-|nuORF	MSMS	HCT116MG_D190212_S3	3	570.3402709960938	2	570.339518	1138.66448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.656	1	57.382	56.882	57.882	-0.27434								0	0	0	0.91906	1	21916	21916		11.64	0	1		+		19795	16141	12503	12560	19002	19002					0.10069746516137457
LPLIQCPKLLW	11	Unmodified	_LPLIQCPKLLW_					0	0	0			REV__GPR32|p.Q329Pfs*?|1|0.16|ENSG00000142511|chr19:50771578-50771579|-/T|frameshift_variant	REV__GPR32|p.Q329Pfs*?|1|0.16|ENSG00000142511|chr19:50771578-50771579|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	662.3961181640625	2	662.396502	1322.77845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.039	1	40.662	40.162	41.162	-0.37732								0	0	0	0.95581	1	15078	15078		3.2813	0	1		+		19796	16856	12504	12561	19003	19003					0.12997216558369473
LPLIVKHIRK	10	Unmodified	_LPLIVKHIRK_					0	0	0		ENSG00000179213|ENST00000601727|SIGLECL1	ENSG00000179213|ENST00000601727|SIGLECL1	ENSG00000179213|ENST00000601727|SIGLECL1	MSMS	HCT116MG_D190212_S1	1	406.2797546386719	3	406.279926	1215.81795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.391	1	59.391	58.891	59.891	0								0	0	0	0.97116	1	22890	22890		0	0	1				19797	5542	12505	12562	19004	19004					0.21867104624084277
LPLIYKLWKD	10	Unmodified	_LPLIYKLWKD_					0	0	0			REV__tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	REV__tr|U7SZI1|U7SZI1_FUSNUYfcCfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00762PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	644.888427734375	2	644.886824	1287.7591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.3	1	42.996	42.496	43.496	-0.30472								0	0	0	0.95179	1	16153	16153		4.3292	0.73274	1		+		19798	17879	12506	12563	19005	19005					0.12672583539119842
LPLLIICLLP	10	Unmodified	_LPLLIICLLP_					0	0	0		ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	MULTI-SECPEP	HCT116MG_D190212_S2	2	553.781494140625	2	554.364139	1106.71372	0.39275	0.00021773	-0.042594	-2.3613E-05	0.35016	0.00019412	554.3640531388695	57.95	0.52046	57.775	57.367	57.887	-0.17494					13	9	2	0	0	0	0.30961	1	22326	22326		4.3292	0	1	3738100			19799	6530	12507	12564	19006	19006					0.16463641752375224
LPLLKKPLK	9	Unmodified	_LPLLKKPLK_					0	0	0		ENSG00000241962|ENST00000424491|unknown	ENSG00000241962|ENST00000424491|unknown	ENSG00000241962|ENST00000424491|unknown	MSMS	HCT116MG_D190212_S1	1	525.48779296875	2	525.375895	1048.73724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.12838	1	0.12838	-0.37162	0.62838	0								0	0	0	0.77025	1	51	51		0	0	1				19800	6548	12508	12565	19007	19007					0.2148182358118902
LPLLKKPLK	9	Unmodified	_LPLLKKPLK_					0	0	0		ENSG00000241962|ENST00000424491|unknown	ENSG00000241962|ENST00000424491|unknown	ENSG00000241962|ENST00000424491|unknown	MSMS	HCT116MG_D190212_S3	3	525.2667236328125	2	525.375895	1048.73724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.115	1	56.836	56.336	57.336	-0.27913								0	0	0	0.77025	1	21698	21698		0	0	1				19801	6548	12508	12565	19008	19008					0.2148182358118902
LPLLKSTT	8	Unmodified	_LPLLKSTT_					0	0	0			REV__IGSF10|p.F1637L|1|0.07|ENSG00000152580|chr3:151445072-151445072|A/G|missense_variant	REV__IGSF10|p.F1637L|1|0.07|ENSG00000152580|chr3:151445072-151445072|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	436.7749938964844	2	436.776211	871.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.294	1	53.998	53.498	54.498	-0.29587								0	0	0	0.8837	1	20570	20570		2.3027	1.5091	1		+		19802	16898	12509	12566	19009	19009					0.0969614356264401
LPLLLLPFP	9	Unmodified	_LPLLLLPFP_					0	0	0			REV__ENST00000417098.5_1_2:200322213-200322333:-|nuORF	REV__ENST00000417098.5_1_2:200322213-200322333:-|nuORF	MSMS	HCT116MG_D190212_S1	1	511.835693359375	2	511.836071	1021.65759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.702	1	10.702	10.202	11.202	0								0	0	0	0.77025	1	3303	3303		0	0	1		+		19803	15484	12510	12567	19010	19010					0.14762756907214225
LPLLRRLRGVR	11	Unmodified	_LPLLRRLRGVR_					0	0	0			REV__ENST00000569187.5_1_16:81015453-81040468:-|nuORF	REV__ENST00000569187.5_1_16:81015453-81040468:-|nuORF	MSMS	HCT116MG_D190212_S2	2	674.9537963867188	2	674.95423	1347.89391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.221	1	10.939	10.439	11.439	-0.28186								0	0	0	0.96208	1	3603	3603		0	0	1		+		19804	16566	12511	12568	19011	19011					0.23387501524211984
LPLLSPYA	8	Unmodified	_LPLLSPYA_					0	0	0			REV__ENST00000481451.1_1_10:124172484-124175387:+|nuORF	REV__ENST00000481451.1_1_10:124172484-124175387:+|nuORF	MSMS	HCT116MG_D190212_S2	2	437.256591796875	2	437.257654	872.500755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.146	1	53.957	53.457	54.457	-0.1894								0	0	0	0.8837	1	20839	20839		5.7604	0	1		+		19805	15957	12512	12569	19012	19012					0.05940472016879994
LPLPPVCLLA	10	Unmodified	_LPLPPVCLLA_					0	0	0			REV__ENST00000274853.7_1_6:30653758-30653977:-|nuORF	REV__ENST00000274853.7_1_6:30653758-30653977:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	518.3172607421875	2	518.317189	1034.61982	0.34062	0.00017655	-0.19071	-9.8848E-05	0.14991	7.7699E-05	518.3170568189745	45.79	1.2855	45.418	44.511	45.797	-0.37206					57	36	2	0	0	0	0.88673	1	16763	16763		1.8442	1.0506	1	47277000	+		19806	14706	12513	12570	19013	19013					0.10389922650119843
LPLPPVCLLA	10	Unmodified	_LPLPPVCLLA_					0	0	0			REV__ENST00000274853.7_1_6:30653758-30653977:-|nuORF	REV__ENST00000274853.7_1_6:30653758-30653977:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	518.3174438476562	2	518.317189	1034.61982	0.39222	0.0002033	-0.11054	-5.7296E-05	0.28168	0.000146	518.3170592221437	46.819	3.0622	46.447	45.798	48.86	-0.37134					189	91	4	0	0	0	0.88673	1	17834	17834		1.8442	1.8442	1	79359000	+		19807	14706	12513	12570	19014	19014					0.10389922650119843
LPLPTKLTPN	10	Unmodified	_LPLPTKLTPN_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MSMS	HCT116MG_D190212_S2	2	547.33349609375	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.69	1	23.306	22.806	23.806	-0.38324								0	0	0	0.93466	1	8455	8455		8.1555	1.4324	1				19808	5560	12514	12571	19015	19015					0.11167462062553568
LPLQSSKNSYS	11	Unmodified	_LPLQSSKNSYS_					0	0	0		RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant;RNF180|p.M409Sfs*7|1|0.11|ENSG00000164197|chr5:64217393-64217394|-/TCATACA|frameshift_variant;nc|ENSG00000164197|Q86T96-2|RNF180;ENSG00000164197|ENST00000389100|RNF180	RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant	RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	612.2633666992188	2	612.31696	1222.61937	0.27823	0.00017036	-0.42345	-0.00025928	-0.14522	-8.8922E-05	612.3166233717517	36.593	0.20852	36.292	36.145	36.353	-0.30113					5	3	2	0	0	0	0.36272	1	13472	13472		8.1555	8.1555	1	3207600			19809	4681	12515	12572	19016	19016					0.01696174463972966
LPLRGAKYKLG	11	Unmodified	_LPLRGAKYKLG_					0	0	0			REV__ENSG00000189337|ENST00000376030|KAZN	REV__ENSG00000189337|ENST00000376030|KAZN	MSMS	HCT116MG_D190212_S3	3	608.3857421875	2	608.38224	1214.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.73	1	58.466	57.966	58.966	-0.26405								0	0	0	0.9598	1	22348	22348		1.1933	0.23107	1		+		19810	13998	12516	12573	19017	19017					0.15114234973452767
LPLSPHSHPP	10	Unmodified	_LPLSPHSHPP_					0	0	0			REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF	REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF	MSMS	HCT116MG_D190212_S1	1	541.2935791015625	2	541.293091	1080.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.586	1	30.586	30.086	31.086	0								0	0	0	0.81484	1	11223	11223		26.884	0	1		+		19811	16471	12517	12574	19018	19018					0.03456565054420935
LPLSPHSHPP	10	Unmodified	_LPLSPHSHPP_					0	0	0			REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF	REV__ENST00000558018.5_1_15:89442371-89442626:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	541.293701171875	2	541.293091	1080.57163	0.36754	0.00019894	0.23152	0.00012532	0.59906	0.00032427	541.2931797696726	30.943	0.46943	30.682	30.5	30.97	-0.26071					15	8	2	0	0	0	0.4604	1	11313	11313		37.974	5.6685	1	7186600	+		19812	16471	12517	12574	19019	19019					0.03456565054420935
LPLVPVKRQR	10	Unmodified	_LPLVPVKRQR_					0	0	0		ENST00000463988.1_1_1:31766057-31769628:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40	ENST00000463988.1_1_1:31766057-31769628:-|nuORF	ENST00000463988.1_1_1:31766057-31769628:-|nuORF	MSMS	HCT116MG_D190212_S2	2	603.8402709960938	2	603.395682	1204.77681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.03	1	55.845	55.345	56.345	-0.18413								0	0	0	0.96377	1	21611	21611		1.6526	0.17072	1				19813	1111	12518	12575	19020	19020					0.182613435846406
LPLWINEKKKE	11	Unmodified	_LPLWINEKKKE_					0	0	0		tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	698.9662475585938	2	699.411195	1396.80784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.183	1	33.797	33.297	34.297	-0.38558								0	0	0	0.95113	1	12472	12472		5.7319	0.43497	1				19814	18409	12519	12576	19021	19021					0.12530452108194368
LPLYLWQP	8	Unmodified	_LPLYLWQP_					0	0	0		EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;EPG5|p.Y1902Ifs*26|3|0.23|ENSG00000152223|chr18:45879178-45879178|A/-|frameshift_variant;EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2538452148438	2	515.292028	1028.5695	0.27381	0.00014109	-0.29843	-0.00015378	-0.024618	-1.2686E-05	515.2915890466311	32.092	0.41721	32.092	31.753	32.17	0					10	7	2	0	0	0	0.81821	1	11702	11702		9.3474	9.3474	1	3926400			19815	4139	12520	12577	19022	19022					0.05636136316593365
LPLYLWQP	8	Unmodified	_LPLYLWQP_					0	0	0		EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;EPG5|p.Y1902Ifs*26|3|0.23|ENSG00000152223|chr18:45879178-45879178|A/-|frameshift_variant;EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	515.292028	1028.5695	0.27381	0.00014109	-0.29843	-0.00015378	-0.024618	-1.2686E-05	515.2915890466311	32.092	0.41721	32.092	31.753	32.17	0	0	0	NaN	9.3474	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3926400			19816	4139	12520	12577							0.05636136316593365
LPMEEAFELP	10	Unmodified	_LPMEEAFELP_					0	0	0		ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant;ENSG00000152348|ENST00000282185|ATG10	ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant	ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	588.2863159179688	2	588.286282	1174.55801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.105	1	39.804	39.304	40.304	-0.30137								0	0	0	0.93576	1	14878	14878		7.9102	0	1				19817	210	12521	12578	19023	19023					-0.022284735596940664
LPMHRRRLLRM	11	Unmodified	_LPMHRRRLLRM_					0	0	0			REV__GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	REV__GALNT6|p.K520Sfs*79|1|0.33|ENSG00000139629|chr12:51357394-51357394|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	739.9395141601562	2	739.937199	1477.85985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.794	1	40.492	39.992	40.992	-0.30161								0	0	0	0.95925	1	15156	15156		1.4819	0.61753	1		+		19818	12268	12522	12579	19024	19024					0.14003013769342942
LPMPPDLSPP	10	Unmodified	_LPMPPDLSPP_					0	0	0			REV__ENST00000428457.1_1_7:47317609-47317696:-|nuORF	REV__ENST00000428457.1_1_7:47317609-47317696:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	532.2351684570312	2	532.27826	1062.54197	0.4502	0.00023963	-0.016089	-8.5639E-06	0.43411	0.00023107	532.7786376433031	19.612	0.52085	19.672	19.281	19.802	0.05983					12	9	2	0	0	0	0.28496	1	6612	6612		13.906	5.9959	1	1988400	+		19819	15569	12523	12580	19025	19025					0.013198649940704854
LPMTRKFQEIK	11	Unmodified	_LPMTRKFQEIK_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MSMS	HCT116MG_D190212_S4	4	695.8978271484375	2	695.897397	1389.78024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.768	1	41.391	40.891	41.891	-0.37637								0	0	0	0.95113	1	15327	15327		5.7319	0	1		+		19820	10381	12524	12581	19026	19026					0.10094225576335702
LPNADDTWYL	10	Unmodified	_LPNADDTWYL_					0	0	0		CD1D|p.E259D|1|0.35|ENSG00000158473|chr1:158183047-158183047|G/T|missense_variant	CD1D|p.E259D|1|0.35|ENSG00000158473|chr1:158183047-158183047|G/T|missense_variant	CD1D|p.E259D|1|0.35|ENSG00000158473|chr1:158183047-158183047|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	604.285888671875	2	604.285128	1206.5557	0.75972	0.00045909	-0.20501	-0.00012388	0.55471	0.0003352	604.284927109849	48.454	0.26019	48.138	47.984	48.244	-0.31596					11	4	3	0	0	0	0.21913	1	18222	18222		57.722	17.772	1	10558000			19821	368	12525	12582	19027	19027					-0.039311859731242293
LPNFVKML	8	Unmodified	_LPNFVKML_					0	0	0		ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	MULTI-SECPEP	HCT116MG_D190212_S4	4	481.7691650390625	2	481.280606	960.546659	0.35362	0.00017019	0.47377	0.00022801	0.82738	0.0003982	481.2803312785343	46.438	0.69873	46.066	45.941	46.64	-0.37134					22	16	3	0	0	0	0.32538	1	17193	17193		5.2307	0	1	3023700			19822	5540	12526	12583	19028	19028					0.06480793927505601
LPNLIIYFI	9	Unmodified	_LPNLIIYFI_					0	0	0			REV__ENSG00000181939|ENST00000642128|OR4C15	REV__ENSG00000181939|ENST00000642128|OR4C15	MSMS	HCT116MG_D190212_S1	1	553.3338623046875	2	553.336436	1104.65832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.375	1	38.375	37.875	38.875	0								0	0	0	0.61599	1	14365	14365		23.148	2.6948	1		+		19823	13699	12527	12584	19029	19029					0.11017551556278704
LPPALRILSR	10	Unmodified	_LPPALRILSR_					0	0	0		ZFP36L1|p.P274Rfs*33|1|0.26|ENSG00000185650|chr14:68789729-68789729|G/-|frameshift_variant;ZFP36L1|p.G271Vfs*36|1|0.32|ENSG00000185650|chr14:68789738-68789738|C/-|frameshift_variant	ZFP36L1|p.P274Rfs*33|1|0.26|ENSG00000185650|chr14:68789729-68789729|G/-|frameshift_variant	ZFP36L1|p.P274Rfs*33|1|0.26|ENSG00000185650|chr14:68789729-68789729|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	379.2485046386719	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.909	1	55.621	55.121	56.121	-0.28773								0	0	0	0.96769	1	21213	21213		0.77653	0.50751	1				19824	18713	12528	12585	19030	19030					0.1617396580197692
LPPDLCGFHY	10	Unmodified	_LPPDLCGFHY_					0	0	0			REV__nc|ENSG00000106443|O94880-2|PHF14	REV__nc|ENSG00000106443|O94880-2|PHF14	MSMS	HCT116MG_D190212_S2	2	581.2733154296875	2	581.273509	1160.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.329	1	27.999	27.499	28.499	-0.32987								0	0	0	0.91906	1	10329	10329		11.64	0.81637	1		+		19825	11297	12529	12586	19031	19031					-0.04137903291461953
LPPEYAST	8	Unmodified	_LPPEYAST_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MSMS	HCT116MG_D190212_S3	3	439.2174072265625	2	439.218726	876.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.461	1	41.159	40.659	41.659	-0.30185								0	0	0	0.8837	1	15424	15424		6.3541	0	1				19826	5521	12530	12587	19032	19032					-0.020255856391486304
LPPLDRYRDD	10	Unmodified	_LPPLDRYRDD_					0	0	0		YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant;ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1	YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant	YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	630.3229370117188	2	630.322576	1258.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.673	1	31.302	30.802	31.802	-0.37026								0	0	0	0.90892	1	11505	11505		13.906	1.6654	1				19827	2651	12531	12588	19033	19033					0.01162996558082341
LPPLLKELAP	10	Unmodified	_LPPLLKELAP_					0	0	0			REV__ENST00000459899.1_1_14:35857513-35858113:-|nuORF	REV__ENST00000459899.1_1_14:35857513-35858113:-|nuORF	MSMS	HCT116MG_D190212_S4	4	364.2328186035156	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.782	1	59.511	59.011	60.011	-0.27156								0	0	0	0.96769	1	22506	22506		0.77653	0.078866	1		+		19828	15767	12532	12589	19034	19034					0.13852936584999043
LPPPPPPLGAP	11	Unmodified	_LPPPPPPLGAP_					0	0	0		WIPF3|p.D100Rfs*145|1|0.13|ENSG00000122574|chr7:29879077-29879078|-/T|frameshift_variant;WIPF3|p.P325Rfs*49|1|0.42|ENSG00000122574|chr7:29884464-29884464|C/-|frameshift_variant;WIPF3|p.P298Lfs*76|1|0.4|ENSG00000122574|chr7:29884382-29884382|C/-|frameshift_variant;ENSG00000122574|ENST00000242140|WIPF3	WIPF3|p.D100Rfs*145|1|0.13|ENSG00000122574|chr7:29879077-29879078|-/T|frameshift_variant	WIPF3|p.D100Rfs*145|1|0.13|ENSG00000122574|chr7:29879077-29879078|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	526.8090209960938	2	526.810585	1051.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.871	1	31.496	30.996	31.996	-0.37529								0	0	0	0.93181	1	11585	11585		15.847	1.9411	1				19829	2770	12533	12590	19035	19035					0.08287807862370755
LPPPSPRCLPP	11	Unmodified	_LPPPSPRCLPP_					0	0	0		AGFG2|p.P279Qfs*118|1|0.41|ENSG00000106351|chr7:100555692-100555692|T/-|frameshift_variant	AGFG2|p.P279Qfs*118|1|0.41|ENSG00000106351|chr7:100555692-100555692|T/-|frameshift_variant	AGFG2|p.P279Qfs*118|1|0.41|ENSG00000106351|chr7:100555692-100555692|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	587.3275756835938	2	587.326076	1172.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.69	1	40.388	39.888	40.888	-0.30161								0	0	0	0.94924	1	15114	15114		6.7232	0	1				19830	75	12534	12591	19036	19036					0.05818637904962998
LPPPSPRCLPP	11	Unmodified	_LPPPSPRCLPP_					0	0	0		AGFG2|p.P279Qfs*118|1|0.41|ENSG00000106351|chr7:100555692-100555692|T/-|frameshift_variant	AGFG2|p.P279Qfs*118|1|0.41|ENSG00000106351|chr7:100555692-100555692|T/-|frameshift_variant	AGFG2|p.P279Qfs*118|1|0.41|ENSG00000106351|chr7:100555692-100555692|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	587.3282470703125	2	587.326076	1172.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.966	1	40.589	40.089	41.089	-0.37732								0	0	0	0.94924	1	15049	15049		6.7232	0.51738	1				19831	75	12534	12591	19037	19037					0.05818637904962998
LPPPWQVP	8	Unmodified	_LPPPWQVP_					0	0	0			REV__ENST00000367178.7_2_6:155054847-155055060:+|nuORF	REV__ENST00000367178.7_2_6:155054847-155055060:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	466.76409912109375	2	467.263271	932.511988	0.39766	0.00018581	-0.28764	-0.00013441	0.11002	5.1408E-05	467.26326076901756	41.028	0.20831	40.726	40.632	40.84	-0.30185					6	3	2	0	0	0	0.31111	1	15213	15213		5.7604	0	1	2672400	+		19832	15117	12535	12592	19038	19038					0.04303294111036848
LPPSRPRQP	9	Unmodified	_LPPSRPRQP_					0	0	0			REV__ENSG00000133422|ENST00000397641|MORC2	REV__ENSG00000133422|ENST00000397641|MORC2	MSMS	HCT116MG_D190212_S3	3	524.3082275390625	2	524.306532	1046.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.53	1	26.381	25.881	26.881	-0.14924								0	0	0	0.71969	1	9522	9522		18.135	1.1927	1		+		19833	12030	12536	12593	19039	19039					0.07707673665595394
LPPTLSQPI	9	Unmodified	_LPPTLSQPI_					0	0	0			REV__ENST00000449960.1_1:144598537-144615173:+|nuORF	REV__ENST00000449960.1_1:144598537-144615173:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2872314453125	2	483.286943	964.559333	0.40605	0.00019624	0.12382	5.9843E-05	0.52988	0.00025608	483.2869075660763	44.526	0.53683	44.218	43.76	44.297	-0.30759					11	10	2	0	0	0	0.1037	1	16613	16613		57.471	3.6386	1	4396200	+		19834	15703	12537	12594	19040	19040					0.07563528591379054
LPPTLSQPI	9	Unmodified	_LPPTLSQPI_					0	0	0			REV__ENST00000449960.1_1:144598537-144615173:+|nuORF	REV__ENST00000449960.1_1:144598537-144615173:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	483.286943	964.559333	0.40605	0.00019624	0.12382	5.9843E-05	0.52988	0.00025608	483.2869075660763	44.526	0.53683	44.218	43.76	44.297	-0.30759	0.15504	3.0981E-05	NaN	57.471	11	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4396200	+		19835	15703	12537	12594							0.07563528591379054
LPPWRPWWWNR	11	Unmodified	_LPPWRPWWWNR_					0	0	0		ENSG00000174276|ENST00000310597|ZNHIT2	ENSG00000174276|ENST00000310597|ZNHIT2	ENSG00000174276|ENST00000310597|ZNHIT2	MSMS	HCT116MG_D190212_S4	4	797.416015625	2	797.414937	1592.81532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.709	1	29.359	28.859	29.859	-0.34921								0	0	0	0.95954	1	10740	10740		1.3295	0.13619	1				19836	5323	12538	12595	19041	19041					0.04262649219162995
LPQAAGERR	9	Unmodified	_LPQAAGERR_					0	0	0		AHNAK2|p.F346Sfs*42|1|0.12|ENSG00000185567|chr14:104954416-104954416|C/-|frameshift_variant	AHNAK2|p.F346Sfs*42|1|0.12|ENSG00000185567|chr14:104954416-104954416|C/-|frameshift_variant	AHNAK2|p.F346Sfs*42|1|0.12|ENSG00000185567|chr14:104954416-104954416|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	499.2807922363281	2	499.280515	996.546476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.674	1	55.362	54.862	55.862	-0.312								0	0	0	0.768	1	20853	20853		7.9102	0.62092	1				19837	84	12539	12596	19042	19042					0.04806510251853524
LPQAFFPSQPQ	11	Unmodified	_LPQAFFPSQPQ_					0	0	0		ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	MSMS	HCT116MG_D190212_S4	4	630.3229370117188	2	630.324588	1258.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.34	1	31.961	31.461	32.461	-0.37924								0	0	0	0.94012	1	11775	11775		11.495	0.6952	1				19838	3178	12540	12597	19043	19043					0.015650860518235277
LPQFQLQIHTK	11	Unmodified	_LPQFQLQIHTK_					0	0	0			REV__nc|ENSG00000188107|Q5T1H1|EYS	REV__nc|ENSG00000188107|Q5T1H1|EYS	MSMS	HCT116MG_D190212_S1	1	676.7884521484375	2	676.887887	1351.76122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.793	1	21.793	21.293	22.293	0								0	0	0	0.95113	1	7684	7684		5.7319	0.43497	1		+		19839	17254	12541	12598	19044	19044					0.09941012276908623
LPQLCFPK	8	Unmodified	_LPQLCFPK_					0	0	0		ENST00000429172.5_2_2:171627798-171634191:+|nuORF	ENST00000429172.5_2_2:171627798-171634191:+|nuORF	ENST00000429172.5_2_2:171627798-171634191:+|nuORF	MSMS	HCT116MG_D190212_S2	2	473.26519775390625	2	473.264956	944.515359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.29	1	52.102	51.602	52.602	-0.18725								0	0	0	0.8837	1	20083	20083		5.7604	0	1				19840	7835	12542	12599	19045	19045					0.04088220893390826
LPQPYWVQCK	10	Unmodified	_LPQPYWVQCK_					0	0	0			REV__ENST00000476202.5_3_3:145924377-145968784:-|nuORF	REV__ENST00000476202.5_3_3:145924377-145968784:-|nuORF	MSMS	HCT116MG_D190212_S3	3	631.3229370117188	2	631.323534	1260.63251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.527	1	46.215	45.715	46.715	-0.31237								0	0	0	0.92607	1	17447	17447		10.074	1.3285	1		+		19841	15771	12543	12600	19046	19046					0.012623340423260743
LPQWLWHW	8	Unmodified	_LPQWLWHW_					0	0	0		ENST00000530149.1_1_11:211118-211532:+|nuORF	ENST00000530149.1_1_11:211118-211532:+|nuORF	ENST00000530149.1_1_11:211118-211532:+|nuORF	MSMS	HCT116MG_D190212_S1	1	583.3006591796875	2	583.300719	1164.58688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.905	1	27.905	27.405	28.405	0								0	0	0	0.8837	1	10145	10145		10.183	0.10947	1				19842	8615	12544	12601	19047	19047					0.011174766422527682
LPRFGRLPP	9	Unmodified	_LPRFGRLPP_					0	0	0		ENST00000360635.7_1_2:9563104-9563296:-|nuORF	ENST00000360635.7_1_2:9563104-9563296:-|nuORF	ENST00000360635.7_1_2:9563104-9563296:-|nuORF	MSMS	HCT116MG_D190212_S1	1	526.8200073242188	2	526.821818	1051.62908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.654	1	40.654	40.154	41.154	0								0	0	0	0.69272	1	15287	15287		19.439	3.5918	1				19843	7354	12545	12602	19048	19048					0.10533452050663072
LPRGWRRWWCD	11	Unmodified	_LPRGWRRWWCD_					0	0	0		ENST00000571644.1_1_16:31372467-31381400:+|nuORF;ENSG00000140678|ENST00000268296|ITGAX	ENST00000571644.1_1_16:31372467-31381400:+|nuORF	ENST00000571644.1_1_16:31372467-31381400:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	766.3826293945312	2	765.880404	1529.74626	0.50345	0.00038558	1.3414	0.0010273	1.8448	0.0014129	765.8812594333067	34.538	0.36337	34.241	33.973	34.336	-0.29707					9	6	2	0	0	0	0.74191	1	12674	12674		3.2813	0	1	4593100			19844	3681	12546	12603	19049	19049					0.002572419279431415
LPRGWRRWWCD	11	Unmodified	_LPRGWRRWWCD_					0	0	0		ENST00000571644.1_1_16:31372467-31381400:+|nuORF;ENSG00000140678|ENST00000268296|ITGAX	ENST00000571644.1_1_16:31372467-31381400:+|nuORF	ENST00000571644.1_1_16:31372467-31381400:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	766.3831176757812	2	765.880404	1529.74626	0.7836	0.00060014	0.37488	0.00028711	1.1585	0.00088726	766.3822466042673	34.617	0.51176	34.231	33.828	34.34	-0.38558					15	9	2	0	0	0	0.74191	1	12591	12591		3.2813	0.54611	1	2998700			19845	3681	12546	12603	19050	19050					0.002572419279431415
LPRHRPPRSW	10	Unmodified	_LPRHRPPRSW_					0	0	0			REV__ENST00000321367.7_1_16:30389472-30389706:-|nuORF	REV__ENST00000321367.7_1_16:30389472-30389706:-|nuORF	MSMS	HCT116MG_D190212_S3	3	651.36962890625	2	651.37053	1300.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.209	1	41.905	41.405	42.405	-0.30352								0	0	0	0.95351	1	15717	15717		3.9444	0	1		+		19846	14887	12547	12604	19051	19051					0.08817233979516459
LPRIKNKSKLQ	11	Unmodified	_LPRIKNKSKLQ_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MSMS	HCT116MG_D190212_S1	1	662.9390869140625	2	662.924803	1323.83505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.959	1	16.959	16.459	17.459	0								0	0	0	0.95023	1	5742	5742		6.2058	0.47393	1				19847	6271	12548	12605	19052	19052					0.18608980439262268
LPRKLFPLLF	10	Unmodified	_LPRKLFPLLF_					0	0	0		LRRC14|p.E29K|1|0.33|ENSG00000160959|chr8:144519810-144519810|G/A|missense_variant	LRRC14|p.E29K|1|0.33|ENSG00000160959|chr8:144519810-144519810|G/A|missense_variant	LRRC14|p.E29K|1|0.33|ENSG00000160959|chr8:144519810-144519810|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	622.4017944335938	2	622.399902	1242.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.968	1	40.968	40.468	41.468	0								0	0	0	0.95179	1	15414	15414		4.3292	0	1				19848	9306	12549	12606	19053	19053					0.17356897501258572
LPRKRQGDFF	10	Unmodified	_LPRKRQGDFF_					0	0	0			REV__SAV1|p.A185Vfs*10|1|0.1|ENSG00000151748|chr14:50644996-50644997|-/ATCA|frameshift_variant	REV__SAV1|p.A185Vfs*10|1|0.1|ENSG00000151748|chr14:50644996-50644997|-/ATCA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	632.3494873046875	2	632.351471	1262.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.29	1	44.917	44.417	45.417	-0.37266								0	0	0	0.95351	1	16701	16701		3.9444	0.3479	1		+		19849	12611	12550	12607	19054	19054					0.0675530327416709
LPRKSVLPGP	10	Unmodified	_LPRKSVLPGP_					0	0	0		ENST00000482172.5_1_13:21205203-21245170:+|nuORF	ENST00000482172.5_1_13:21205203-21245170:+|nuORF	ENST00000482172.5_1_13:21205203-21245170:+|nuORF	MSMS	HCT116MG_D190212_S4	4	532.3330078125	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.572	1	41.196	40.696	41.696	-0.37637								0	0	0	0.95179	1	15260	15260		4.3292	0	1				19850	8260	12551	12608	19055	19055					0.12614301502276248
LPRLKVYKLK	10	Unmodified	_LPRLKVYKLK_					0	0	0		nc|ENSG00000132394|P57772-2|EEFSEC;ENSG00000132394|ENST00000254730|EEFSEC	nc|ENSG00000132394|P57772-2|EEFSEC	nc|ENSG00000132394|P57772-2|EEFSEC	MSMS	HCT116MG_D190212_S3	3	629.4234008789062	2	629.423908	1256.83326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.969	1	54.677	54.177	55.177	-0.2918								0	0	0	0.96377	1	20841	20841		1.6526	0	1				19851	3184	12552	12609	19056	19056					0.2151197142129604
LPRPQAPGPR	10	Unmodified	_LPRPQAPGPR_					0	0	0			REV__ENST00000447274.6_1_11:67056466-67056871:+|nuORF	REV__ENST00000447274.6_1_11:67056466-67056871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	363.5491027832031	3	363.548964	1087.62506	-0.29621	-0.00010769	0.32144	0.00011686	0.025234	9.1737E-06	363.54904768115955	17.114	0.31208	17.199	17.068	17.381	0.084467					6	5	2	0	0	0	0.73913	1	5759	5759		10.899	2.4547	1	2228500	+		19852	15685	12553	12610	19057	19057					0.08475362556941946
LPRQPRSPP	9	Unmodified	_LPRQPRSPP_					0	0	0			REV__ENST00000592808.1_1_19:12885462-12885621:-|nuORF	REV__ENST00000592808.1_1_19:12885462-12885621:-|nuORF	MSMS	HCT116MG_D190212_S4	4	524.7930908203125	2	524.306532	1046.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.069	1	25.779	25.279	26.279	-0.29022								0	0	0	0.76641	1	9269	9269		13.508	0.97634	1		+		19853	16657	12554	12611	19058	19058					0.07707673665595394
LPRTPAATSFA	11	Unmodified	_LPRTPAATSFA_					0	0	0		ENST00000336095.10_1_20:3914586-3914688:-|nuORF	ENST00000336095.10_1_20:3914586-3914688:-|nuORF	ENST00000336095.10_1_20:3914586-3914688:-|nuORF	MSMS	HCT116MG_D190212_S4	4	566.3092041015625	2	566.31148	1130.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.593	1	58.31	57.81	58.81	-0.28305								0	0	0	0.95113	1	22027	22027		5.7319	0.97584	1				19854	7191	12555	12612	19059	19059					0.04832816880320934
LPSEPIDLFK	10	Unmodified	_LPSEPIDLFK_					0	0	0			REV__UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	REV__UGGT2|p.N1268Ifs*10|1|0.3|ENSG00000102595|chr13:95859613-95859613|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	386.8837890625	3	386.885018	1157.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.066	1	20.066	19.566	20.566	0								0	0	0	0.94339	1	6993	6993		3.3196	1.4133	1		+		19855	11157	12556	12613	19060	19060					0.06071451963043728
LPSGDEWLWP	10	Unmodified	_LPSGDEWLWP_					0	0	0			REV__ENST00000536989.1_1_12:10312481-10313100:-|nuORF	REV__ENST00000536989.1_1_12:10312481-10313100:-|nuORF	MSMS	HCT116MG_D190212_S2	2	600.28955078125	2	600.290214	1198.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.95	1	37.857	37.357	38.357	-0.09301								0	0	0	0.94107	1	14242	14242		6.7232	0.99131	1		+		19856	13434	12557	12614	19061	19061					-0.025465782479159316
LPSISLTRKRS	11	Unmodified	_LPSISLTRKRS_					0	0	0			REV__GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant	REV__GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	629.3866577148438	2	629.385511	1256.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.805	1	48.661	48.161	49.161	-0.1437								0	0	0	0.82946	1	18658	18658		29.082	15.176	1		+		19857	11303	12558	12615	19062	19062					0.1383612813417585
LPSLLYHLPFP	11	Unmodified	_LPSLLYHLPFP_					0	0	0		ENST00000358758.11_1_16:29825955-29826759:+|nuORF	ENST00000358758.11_1_16:29825955-29826759:+|nuORF	ENST00000358758.11_1_16:29825955-29826759:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	648.7626953125	2	648.871174	1295.72779	0.53891	0.00034968	1.1856	0.00076928	1.7245	0.001119	648.8718450835712	53.246	0.82446	53.057	52.501	53.326	-0.18922					24	15	2	0	0	0	0.36367	1	20349	20349		9.3831	0	1	7467400			19858	7325	12559	12616	19063	19063					0.09176010505029808
LPSLPVRPQV	10	Unmodified	_LPSLPVRPQV_					0	0	0		ENST00000353796.7_1_7:5085455-5085919:+|nuORF	ENST00000353796.7_1_7:5085455-5085919:+|nuORF	ENST00000353796.7_1_7:5085455-5085919:+|nuORF	MSMS	HCT116MG_D190212_S4	4	553.3416137695312	2	553.340041	1104.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.444	1	35.058	34.558	35.558	-0.38606								0	0	0	0.94107	1	12981	12981		6.7232	0.51738	1				19859	7280	12560	12617	19064	19064					0.11738284156695045
LPSMRKQLPVL	11	Unmodified	_LPSMRKQLPVL_					0	0	0			REV__USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	REV__USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	641.4237670898438	2	641.389208	1280.76386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.51	1	55.51	55.01	56.01	0								0	0	0	0.93374	1	21318	21318		14.838	5.4551	1		+		19860	10594	12561	12618	19065	19065					0.13471144410232228
LPSPAQPSPA	10	Unmodified	_LPSPAQPSPA_					0	0	0		ENST00000321930.4_17:78977795-78978311:+|nuORF	ENST00000321930.4_17:78977795-78978311:+|nuORF	ENST00000321930.4_17:78977795-78978311:+|nuORF	MSMS	HCT116MG_D190212_S4	4	482.75775146484375	2	482.758549	963.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.923	1	35.537	35.037	36.037	-0.38606								0	0	0	0.90892	1	13126	13126		13.906	0	1				19861	7106	12562	12619	19066	19066					0.019334810348595965
LPSPPRGRPGQ	11	Unmodified	_LPSPPRGRPGQ_					0	0	0		ENST00000593685.5_2_19:40321124-40324128:-|nuORF	ENST00000593685.5_2_19:40321124-40324128:-|nuORF	ENST00000593685.5_2_19:40321124-40324128:-|nuORF	MSMS	HCT116MG_D190212_S2	2	581.6045532226562	2	581.327996	1160.64144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.48	1	28.15	27.65	28.65	-0.32987								0	0	0	0.9387	1	10390	10390		12.241	0.60036	1				19862	9050	12563	12620	19067	19067					0.06754443723048098
LPSQIPPTAPG	11	Unmodified	_LPSQIPPTAPG_					0	0	0		nc|ENSG00000181036|Q6DN72-4|FCRL6;nc|ENSG00000181036|Q6DN72-3|FCRL6;nc|ENSG00000181036|Q6DN72-2|FCRL6;ENSG00000181036|ENST00000368106|FCRL6	nc|ENSG00000181036|Q6DN72-4|FCRL6	nc|ENSG00000181036|Q6DN72-4|FCRL6	MULTI-SECPEP	HCT116MG_D190212_S4	4	539.318603515625	2	539.300581	1076.58661	0.33063	0.00017831	0.11093	5.9822E-05	0.44156	0.00023813	539.3004436365076	31.991	0.2076	31.616	31.486	31.694	-0.37529					5	3	2	0	0	0	0.35538	1	11595	11595		13.042	2.2185	1	2867100			19863	5621	12564	12621	19068	19068					0.05138012131760661
LPSSFTPP	8	Unmodified	_LPSSFTPP_					0	0	0			REV__ENST00000237841.5_1_12:3950645-3951302:+|nuORF	REV__ENST00000237841.5_1_12:3950645-3951302:+|nuORF	MSMS	HCT116MG_D190212_S4	4	423.22406005859375	2	423.223811	844.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.698	1	43.324	42.824	43.824	-0.37433								0	0	0	0.8837	1	16072	16072		6.3541	0	1		+		19864	12985	12565	12622	19069	19069					0.004630220860917689
LPSTQTVRQY	10	Unmodified	_LPSTQTVRQY_					0	0	0			REV__ENST00000552916.5_1_12:56965569-56983042:+|nuORF	REV__ENST00000552916.5_1_12:56965569-56983042:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	398.8561706542969	3	398.215539	1191.62479	-0.0050622	-2.0159E-06	0.41563	0.00016551	0.41057	0.0001635	398.2156868905753	33.811	0.15533	33.521	33.408	33.563	-0.29013					4	2	2	0	0	0	0.8392	1	12384	12384		5.0475	0.64137	1	2476600	+		19865	10817	12566	12623	19070	19070					0.03663898046443137
LPSVGDRVFY	10	Unmodified	_LPSVGDRVFY_					0	0	0		sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1;sp|P08546|DPOL_HCMVADNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL54PE=1SV=2	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	576.2938842773438	2	576.806031	1151.59751	0.36578	0.00021098	1.4373	0.00082905	1.8031	0.00104	577.3088726724363	20.536	0.16058	20.157	20.023	20.183	-0.37949					4	2	2	0	0	0	0.30239	1	7144	7144		12.241	2.8575	1	4511600			19866	18206	12567	12624	19071	19071					0.027774145060448063
LPTAGKPC	8	Unmodified	_LPTAGKPC_					0	0	0		ZNF831|p.S306L|1|0.46|ENSG00000124203|chr20:59191936-59191936|C/T|missense_variant	ZNF831|p.S306L|1|0.46|ENSG00000124203|chr20:59191936-59191936|C/T|missense_variant	ZNF831|p.S306L|1|0.46|ENSG00000124203|chr20:59191936-59191936|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	394.197998046875	2	393.712556	785.41056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.728	1	45.356	44.856	45.856	-0.37225								0	0	0	0.8837	1	16879	16879		2.5775	0	1				19867	18739	12568	12625	19072	19072					0.009270994168105062
LPTCPHWFLL	10	Unmodified	_LPTCPHWFLL_					0	0	0		CCNL1|p.R264C|1|0.32|ENSG00000163660|chr3:157150154-157150154|G/A|missense_variant	CCNL1|p.R264C|1|0.32|ENSG00000163660|chr3:157150154-157150154|G/A|missense_variant	CCNL1|p.R264C|1|0.32|ENSG00000163660|chr3:157150154-157150154|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	613.792236328125	2	613.823169	1225.63179	0.61375	0.00037673	-0.8005	-0.00049136	-0.18675	-0.00011463	613.8223487312891	46.547	0.26038	46.235	46.075	46.335	-0.31237					7	4	2	0	0	0	0.28496	1	17490	17490		19.257	6.2145	1	3706200			19868	363	12569	12626	19073	19073					0.02799539393276973
LPTCPHWFLL	10	Unmodified	_LPTCPHWFLL_					0	0	0		CCNL1|p.R264C|1|0.32|ENSG00000163660|chr3:157150154-157150154|G/A|missense_variant	CCNL1|p.R264C|1|0.32|ENSG00000163660|chr3:157150154-157150154|G/A|missense_variant	CCNL1|p.R264C|1|0.32|ENSG00000163660|chr3:157150154-157150154|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	613.823169	1225.63179	0.38955	0.00023911	-0.75211	-0.00046166	-0.36256	-0.00022255	613.8224743788505	46.195	0.206	46.094	46.017	46.223	-0.1014	-0.070449	1.3539E-05	NaN	19.257	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8311500			19869	363	12569	12626							0.02799539393276973
LPTCPPGT	8	Unmodified	_LPTCPPGT_					0	0	0		nc|ENSG00000101282|Q2I0M5-2|RSPO4;ENSG00000101282|ENST00000217260|RSPO4	nc|ENSG00000101282|Q2I0M5-2|RSPO4	nc|ENSG00000101282|Q2I0M5-2|RSPO4	MULTI-MSMS	HCT116MG_D190212_S2	2	785.3871459960938	1	785.386202	784.378925	1.0842	0.00085153	-0.45606	-0.00035818	0.62816	0.00049335	785.3857229189881	51.889	0.20631	51.706	51.629	51.835	-0.18369					5	3	2	0	0	0	0.25164	1	19955	19955		63.563	0	1	11492000			19870	1772	12570	12627	19074	19074					-0.021888933371201347
LPTEPTSI	8	Unmodified	_LPTEPTSI_					0	0	0			REV__ENSG00000014138|ENST00000265465|POLA2	REV__ENSG00000014138|ENST00000265465|POLA2	MSMS	HCT116MG_D190212_S3	3	429.23297119140625	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.653	1	33.363	32.863	33.863	-0.29013								0	0	0	0.8837	1	12359	12359		14.582	1.0738	1		+		19871	10538	12571	12628	19075	19075					0.02022987394957454
LPTIIAPP	8	Unmodified	_LPTIIAPP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S3	3	411.2602844238281	2	411.260197	820.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.917	1	22.898	22.398	23.398	-0.018869								0	0	0	0.8837	1	8065	8065		6.3541	0	1		+		19872	12706;18029;17171	12572	12629	19076	19076					0.08840775879502871
LPTPSYKYNEW	11	Unmodified	_LPTPSYKYNEW_					0	0	0		DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant;DHX38|p.G697Wfs*16|1|0.38|ENSG00000140829|chr16:72104557-72104558|-/T|frameshift_variant;DHX38|p.A739Pfs*17|1|0.38|ENSG00000140829|chr16:72105086-72105086|G/-|frameshift_variant;ENSG00000140829|ENST00000268482|DHX38;ENST00000564307.5_1_16:72132668-72133652:+|nuORF	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	DHX38|p.G603Efs*22|1|0.36|ENSG00000140829|chr16:72103767-72103767|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	699.0732421875	2	699.340435	1396.66632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.373	1	30.089	29.589	30.589	-0.28453								0	0	0	0.94284	1	11164	11164		10.074	0.6908	1				19873	669	12573	12630	19077	19077					-0.016149659849133968
LPTSFVRRAR	10	Unmodified	_LPTSFVRRAR_					0	0	0			REV__ENST00000462251.1_1_19:11877828-11888701:+|nuORF	REV__ENST00000462251.1_1_19:11877828-11888701:+|nuORF	MSMS	HCT116MG_D190212_S1	1	401.5751037597656	3	401.575401	1201.70437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.024	1	39.024	38.524	39.524	0								0	0	0	0.95631	1	14628	14628		3.3196	0.47636	1		+		19874	15795	12574	12631	19078	19078					0.11159009511061413
LPVGDSPLGP	10	Unmodified	_LPVGDSPLGP_					0	0	0			REV__ENST00000372458.7_1_1:43830941-43833680:-|nuORF	REV__ENST00000372458.7_1_1:43830941-43833680:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	476.2706604003906	2	476.260925	950.507297	0.38412	0.00018294	1.3075	0.00062269	1.6916	0.00080563	476.2617188459146	32.024	0.20699	31.794	31.631	31.838	-0.23009					5	3	2	0	0	0	0.74117	1	11798	11798		16.942	3.4344	1	10414000	+		19875	15174	12575	12632	19079	19079					0.03006365177623138
LPVGGSLE	8	Unmodified	_LPVGGSLE_					0	0	0		ENSG00000244617|ENST00000320256|ASPRV1;nc|ENSG00000244617|Q53RT3|ASPRV1	ENSG00000244617|ENST00000320256|ASPRV1	ENSG00000244617|ENST00000320256|ASPRV1	MSMS	HCT116MG_D190212_S4	4	386.21722412109375	2	386.215986	770.417419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.83	1	57.535	57.035	58.035	-0.29465								0	0	0	0.8837	1	21718	21718		2.5775	0	1				19876	6567	12576	12633	19080	19080					0.02302735569048764
LPVHVLREWQ	10	Unmodified	_LPVHVLREWQ_					0	0	0		RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant;nc|ENSG00000159788|O14924-5|RGS12;RGS12|p.K1178Nfs*32|1|0.71|ENSG00000159788|chr4:3428672-3428672|A/-|frameshift_variant;RGS12|p.Q1292Rfs*49|1|0.23|ENSG00000159788|chr4:3430704-3430704|C/-|frameshift_variant;nc|ENSG00000159788|O14924-4|RGS12;RGS12|p.Q1363Rfs*30|1|0.3|ENSG00000159788|chr4:3430923-3430923|C/-|frameshift_variant;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF;RGS12|p.K869Sfs*2|1|0.44|ENSG00000159788|chr4:3417086-3417086|A/-|frameshift_variant;RGS12|p.C548Y|1|0.07|ENSG00000159788|chr4:3317813-3317813|G/A|missense_variant	RGS12|p.N1124Hfs*23|1|0.3|ENSG00000159788|chr4:3428126-3428127|AG/-|frameshift_variant;RGS12|p.C548Y|1|0.07|ENSG00000159788|chr4:3317813-3317813|G/A|missense_variant	RGS12|p.C548Y|1|0.07|ENSG00000159788|chr4:3317813-3317813|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	638.861328125	2	638.861672	1275.70879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.089	1	52.9	52.4	53.4	-0.18922								0	0	0	0.92272	1	20408	20408		10.824	0	1				19877	4424;18102	12577	12634	19081	19081					0.08196473933980997
LPVHVLREWQY	11	Unmodified	_LPVHVLREWQY_					0	0	0		RGS12|p.C548Y|1|0.07|ENSG00000159788|chr4:3317813-3317813|G/A|missense_variant	RGS12|p.C548Y|1|0.07|ENSG00000159788|chr4:3317813-3317813|G/A|missense_variant	RGS12|p.C548Y|1|0.07|ENSG00000159788|chr4:3317813-3317813|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	720.3924560546875	2	720.393336	1438.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.811	1	36.51	36.01	37.01	-0.30113								0	0	0	0.94924	1	13614	13614		6.7232	0.99131	1				19878	18102	12578	12635	19082	19082					0.0702841465124493
LPVLPQLLF	9	Unmodified	_LPVLPQLLF_					0	0	0			REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	MSMS	HCT116MG_D190212_S2	2	520.3325805664062	2	520.331153	1038.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.718	1	53.528	53.028	54.028	-0.1894								0	0	0	0.76877	1	20664	20664		5.2307	0.90143	1		+		19879	15677	12579	12636	19083	19083					0.12997568901823797
LPVLPQLLF	9	Unmodified	_LPVLPQLLF_					0	0	0			REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	MSMS	HCT116MG_D190212_S4	4	520.3322143554688	2	520.331153	1038.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.565	1	34.18	33.68	34.68	-0.38558								0	0	0	0.76967	1	12626	12626		2.0598	0.21551	1		+		19880	15677	12579	12636	19084	19084					0.12997568901823797
LPVLPVLKVLV	11	Unmodified	_LPVLPVLKVLV_					0	0	0			REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	397.2806701660156	3	397.280932	1188.82097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.749	1	58.485	57.985	58.985	-0.26405								0	0	0	0.9619	1	22356	22356		0.094841	0.094841	1		+		19881	10227	12580	12637	19085	19085					0.23410934958269536
LPVMLFVKRL	10	Unmodified	_LPVMLFVKRL_					0	0	0		ENSG00000176925|ENST00000322110|OR51F2;nc|ENSG00000176925|Q8NH61|OR51F2	ENSG00000176925|ENST00000322110|OR51F2	ENSG00000176925|ENST00000322110|OR51F2	MSMS	HCT116MG_D190212_S1	1	608.8003540039062	2	608.385937	1214.75732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.744	1	54.744	54.244	55.244	0								0	0	0	0.96291	1	21002	21002		1.8442	0.19162	1				19882	5441	12581	12638	19086	19086					0.15853251249541245
LPVTFRCLE	9	Unmodified	_LPVTFRCLE_					0	0	0		SLC1A2|p.I412Mfs*78|1|0.06|ENSG00000110436|chr11:35286807-35286808|-/GGTGGAAGAC|frameshift_variant;nc|ENSG00000110436|P43004-3|SLC1A2;nc|ENSG00000110436|P43004-2|SLC1A2;ENSG00000110436|ENST00000278379|SLC1A2	SLC1A2|p.I412Mfs*78|1|0.06|ENSG00000110436|chr11:35286807-35286808|-/GGTGGAAGAC|frameshift_variant	SLC1A2|p.I412Mfs*78|1|0.06|ENSG00000110436|chr11:35286807-35286808|-/GGTGGAAGAC|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	539.2926025390625	2	539.291702	1076.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.555	1	36.441	35.941	36.941	-0.11478								0	0	0	0.71969	1	13673	13673		18.135	2.2878	1				19883	2248	12582	12639	19087	19087					0.033629736052489534
LPWKLPVV	8	Unmodified	_LPWKLPVV_					0	0	0		ENST00000407418.7_1_22:39261369-39261624:-|nuORF	ENST00000407418.7_1_22:39261369-39261624:-|nuORF	ENST00000407418.7_1_22:39261369-39261624:-|nuORF	MSMS	HCT116MG_D190212_S3	3	476.306640625	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.765	1	58.501	58.001	59.001	-0.26405								0	0	0	0.8837	1	22362	22362		0.79363	0	1				19884	7720	12583	12640	19088	19088					0.11805030558900853
LPWQQRSL	8	Unmodified	_LPWQQRSL_					0	0	0		nc|ENSG00000168066|Q15637-5|SF1;nc|ENSG00000168066|Q15637-4|SF1;ENST00000448404.5_1_11:64532928-64535069:-|nuORF	nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-5|SF1	MSMS	HCT116MG_D190212_S3	3	514.2872314453125	2	514.287808	1026.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.734	1	37.433	36.933	37.933	-0.30137								0	0	0	0.8837	1	13971	13971		8.5933	0	1				19885	9539	12584	12641	19089	19089					0.04884582399995452
LPWSRGEP	8	Unmodified	_LPWSRGEP_					0	0	0		ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	MSMS	HCT116MG_D190212_S4	4	471.2454528808594	2	471.245609	940.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.118	1	26.807	26.307	27.307	-0.3114								0	0	0	0.8217	1	9693	9693		20.871	5.024	1				19886	2527	12585	12642	19090	19090					0.00404631583239734
LPWSRLPL	8	Unmodified	_LPWSRLPL_					0	0	0			REV__ENST00000451997.5_1_22:38062222-38062288:+|nuORF	REV__ENST00000451997.5_1_22:38062222-38062288:+|nuORF	MSMS	HCT116MG_D190212_S4	4	491.2983703613281	2	491.297645	980.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.85	1	35.464	34.964	35.964	-0.38606								0	0	0	0.8837	1	13097	13097		6.3541	0	1		+		19887	15718	12586	12643	19091	19091					0.08966958410769621
LPYAFRKAMS	10	Unmodified	_LPYAFRKAMS_					0	0	0			REV__ENSG00000182950|ENST00000332145|ODF3L1	REV__ENSG00000182950|ENST00000332145|ODF3L1	MSMS	HCT116MG_D190212_S4	4	592.2095947265625	2	592.318251	1182.62195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.129	1	34.743	34.243	35.243	-0.38606								0	0	0	0.94107	1	12854	12854		6.7232	0.51738	1		+		19888	13736	12587	12644	19092	19092					0.037943513879099555
LPYDMLLL	8	Unmodified	_LPYDMLLL_					0	0	0		tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	tr|U7SPP7|U7SPP7_FUSNUMethylaspartatemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01855PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	489.27056884765625	2	489.272447	976.530341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.247	1	37.247	36.747	37.747	0								0	0	0	0.80194	1	13910	13910		22.453	5.5103	1				19889	18382	12588	12645	19093	19093					0.04113667970739243
LPYFRTHEWAH	11	Unmodified	_LPYFRTHEWAH_					0	0	0		ZNF625|p.K161Nfs*23|1|0.41|ENSG00000257591|chr19:12145936-12145936|C/-|frameshift_variant;nc|ENSG00000257591|Q96I27|ZNF625;ENSG00000257591|ENST00000439556|ZNF625	ZNF625|p.K161Nfs*23|1|0.41|ENSG00000257591|chr19:12145936-12145936|C/-|frameshift_variant	ZNF625|p.K161Nfs*23|1|0.41|ENSG00000257591|chr19:12145936-12145936|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	728.8590087890625	2	728.85966	1455.70477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.124	1	36.739	36.239	37.239	-0.38486								0	0	0	0.95196	1	13612	13612		5.2969	0.39987	1				19890	6617	12589	12646	19094	19094					-0.004856155597053657
LPYGGGCC	8	Unmodified	_LPYGGGCC_					0	0	0		ENST00000360467.5_1_13:110960233-110960438:+|nuORF	ENST00000360467.5_1_13:110960233-110960438:+|nuORF	ENST00000360467.5_1_13:110960233-110960438:+|nuORF	MSMS	HCT116MG_D190212_S1	1	385.1531677246094	2	385.154017	768.293481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.23649	1	0.23649	-0.26351	0.73649	0								0	0	0	0.8837	1	86	86		0.79363	0.79363	1				19891	7350	12590	12647	19095	19095					-0.09993381794436118
LPYGGGCC	8	Unmodified	_LPYGGGCC_					0	0	0		ENST00000360467.5_1_13:110960233-110960438:+|nuORF	ENST00000360467.5_1_13:110960233-110960438:+|nuORF	ENST00000360467.5_1_13:110960233-110960438:+|nuORF	MSMS	HCT116MG_D190212_S3	3	385.1530456542969	2	385.154017	768.293481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0775	1	8.0941	7.5941	8.5941	0.016533								0	0	0	0.8837	1	2435	2435		0.79363	0.10326	1				19892	7350	12590	12647	19096	19096					-0.09993381794436118
LPYRDNLFCEW	11	Unmodified	_LPYRDNLFCEW_					0	0	0		CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant;CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	485.8983459472656	3	485.8957	1454.66527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.405	1	13.474	12.974	13.974	0.069158								0	0	0	0.96141	1	4248	4248		0.094841	0	1				19893	617	12591	12648	19097	19097					-0.043875036254576116
LPYYEMTAPLP	11	Unmodified	_LPYYEMTAPLP_					0	0	0		ENSG00000185272|ENST00000400577|RBM11	ENSG00000185272|ENST00000400577|RBM11	ENSG00000185272|ENST00000400577|RBM11	MSMS	HCT116MG_D190212_S2	2	647.8248901367188	2	647.823032	1293.63151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.041	1	43.963	43.463	44.463	-0.078373								0	0	0	0.93552	1	16716	16716		13.906	4.5229	1				19894	5816	12592	12649	19098	19098					-0.00355925117219158
LQAAIASINT	10	Unmodified	_LQAAIASINT_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-SECPEP	HCT116MG_D190212_S2	2	501.26641845703125	2	501.284931	1000.55531	0.48962	0.00024544	-0.57346	-0.00028747	-0.083844	-4.203E-05	501.2846639589334	25.281	0.41675	24.906	24.66	25.076	-0.37521					12	7	2	0	0	0	0.2916	1	9066	9066		12.241	1.4411	1	4743800	+		19895	12008	12593	12650	19099	19099					0.055054390976465584
LQAELGCL	8	Unmodified	_LQAELGCL_					0	0	0			REV__SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	REV__SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	846.4404296875	1	846.438966	845.431689	0.72162	0.00061081	0.67095	0.00056792	1.3926	0.0011787	846.4394426913335	54.979	0.25594	54.791	54.611	54.867	-0.18797					6	4	2	0	0	0	0.76257	1	21187	21187		15.768	1.1865	1	34159000	+		19896	12198	12594	12651	19100	19100					0.0027906472569156904
LQAELGCL	8	Unmodified	_LQAELGCL_					0	0	0			REV__SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	REV__SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	846.438966	845.431689	0.72162	0.00061081	0.67095	0.00056792	1.3926	0.0011787	846.4394426913335	54.979	0.25594	54.791	54.611	54.867	-0.18797	-0.0025524	-0.00016686	NaN	15.768	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34159000	+		19897	12198	12594	12651							0.0027906472569156904
LQAELGCL	8	Unmodified	_LQAELGCL_					0	0	0			REV__SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	REV__SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	846.438966	845.431689	0.73245	0.00061998	0.94353	0.00079864	1.676	0.0014186	846.4397085799006	55.087	0.20935	54.796	54.665	54.874	-0.2918	0.0025524	6.3861E-05	NaN	15.768	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4464400	+		19898	12198	12594	12651							0.0027906472569156904
LQASQGPSGPP	11	Unmodified	_LQASQGPSGPP_					0	0	0			REV__ENSG00000189051|ENST00000399398|RNF222	REV__ENSG00000189051|ENST00000399398|RNF222	MULTI-MSMS	HCT116MG_D190212_S1	1	520.642822265625	2	519.764363	1037.51417	0.50658	0.0002633	-1.1161	-0.00058009	-0.60949	-0.00031679	519.7636481598271	31.518	0.46848	31.518	31.18	31.648	0					10	8	2	0	0	0	0.70377	1	11595	11595		20.415	3.3016	1	3282100	+		19899	13987	12595	12652	19101	19101					-0.0030832194179311045
LQDGTLAAYP	10	Unmodified	_LQDGTLAAYP_					0	0	0		nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF	nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L	MSMS	HCT116MG_D190212_S2	2	350.1988830566406	3	350.181835	1047.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.978	1	26.626	26.126	27.126	-0.35254								0	0	0	0.92573	1	9782	9782		10.151	0	1				19900	1304	12596	12653	19102	19102					0.0018144634370855783
LQDGVTLHDV	10	Unmodified	_LQDGVTLHDV_					0	0	0		ENST00000588021.5_1_19:6007990-6026242:-|nuORF;nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2	ENST00000588021.5_1_19:6007990-6026242:-|nuORF	ENST00000588021.5_1_19:6007990-6026242:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	549.286865234375	2	548.785296	1095.55604	0.37995	0.00020851	0.038019	2.0864E-05	0.41797	0.00022938	549.2865146179114	26.411	0.31092	26.05	25.921	26.232	-0.36164					10	5	2	0	0	0	0.72678	1	9588	9588		18.146	1.0335	1	15819000			19901	1490	12597	12654	19103	19103					0.012082337467063553
LQDLRKRINI	10	Unmodified	_LQDLRKRINI_					0	0	0			REV__ENST00000506809.1_1_4:56818296-56818410:+|nuORF	REV__ENST00000506809.1_1_4:56818296-56818410:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	635.3831787109375	2	634.893503	1267.77245	0.77998	0.00049521	-1.1117	-0.00070583	-0.33174	-0.00021062	634.8925721289585	55.121	0.20344	55.121	54.994	55.197	0					9	3	3	0	0	0	0.8428	1	21153	21153		13.906	3.1065	1	288610000	+		19902	10156	12598	12655	19104	19104					0.14927834371087556
LQDLRKRINI	10	Unmodified	_LQDLRKRINI_					0	0	0			REV__ENST00000506809.1_1_4:56818296-56818410:+|nuORF	REV__ENST00000506809.1_1_4:56818296-56818410:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	635.3831787109375	2	634.893503	1267.77245	0.77998	0.00049521	-1.1117	-0.00070583	-0.33174	-0.00021062	634.8925721289585	55.121	0.20344	55.121	54.994	55.197	0					9	3	3	0	0	0	0.31009	1	21153	21153		13.906	3.1065	1	288610000	+		19903	10156	12598	12655	19105	19105					0.14927834371087556
LQDSWEDAAI	10	Unmodified	_LQDSWEDAAI_					0	0	0		CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant;CSF2RB|p.A662Lfs*36|1|0.46|ENSG00000100368|chr22:36937788-36937788|G/-|frameshift_variant;ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant	CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	574.2653198242188	2	574.266936	1146.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.184	1	19.184	18.684	19.684	0								0	0	0	0.57811	1	6638	6638		43.772	3.0475	1				19904	606	12599	12656	19106	19106					-0.04808062869847163
LQDVPVRDLKP	11	Unmodified	_LQDVPVRDLKP_					0	0	0		ENST00000495709.1_1_12:9220421-9221456:-|nuORF;ENST00000495442.1_1_12:9220650-9221456:-|nuORF;ENSG00000175899|ENST00000318602|A2M	ENST00000495709.1_1_12:9220421-9221456:-|nuORF	ENST00000495709.1_1_12:9220421-9221456:-|nuORF	MSMS	HCT116MG_D190212_S4	4	427.2513732910156	3	427.250472	1278.72959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.906	1	60.642	60.142	61.142	-0.26373								0	0	0	0.95976	1	22962	22962		1.2148	0	1				19905	5398	12600	12657	19107	19107					0.10137019522994706
LQDWQQYFWPQ	11	Unmodified	_LQDWQQYFWPQ_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	769.8587036132812	2	769.856783	1537.69901	0.85544	0.00065857	1.436	0.0011055	2.2914	0.0017641	769.8581822739799	19.578	0.45825	19.384	19.122	19.58	-0.19367					19	8	4	0	0	0	0.74191	1	6651	6651		9.544	4.647	1	5141800			19906	2489	12601	12658	19108	19108					-0.04832758862062292
LQEAEAGR	8	Unmodified	_LQEAEAGR_					0	0	0		AluSp_dup17164|chr6:42889159-42889460:+|1.1128196386926228|0.1877517114460719|2.57|474.0|1|1|sense	AluSp_dup17164|chr6:42889159-42889460:+|1.1128196386926228|0.1877517114460719|2.57|474.0|1|1|sense	AluSp_dup17164|chr6:42889159-42889460:+|1.1128196386926228|0.1877517114460719|2.57|474.0|1|1|sense	MULTI-MSMS	HCT116MG_D190212_S4	4	437.2249450683594	2	437.224874	872.435195	0.050611	2.2128E-05	0.026468	1.1573E-05	0.077079	3.3701E-05	437.22486136255344	17.941	0.31201	17.766	17.636	17.948	-0.17501					7	5	2	0	0	0	0.69862	1	6000	6000		23.148	0	1	1459000			19907	105	12602	12659	19109	19109					-0.006125491760940349
LQEEEATDGP	10	Unmodified	_LQEEEATDGP_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MSMS	HCT116MG_D190212_S3	3	544.7412109375	2	544.740751	1087.46695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.568	1	27.38	26.88	27.88	-0.18847								0	0	0	0.90892	1	9941	9941		13.906	2.2658	1		+		19908	12444	12603	12660	19110	19110					-0.07328646003475114
LQEIQERKKFE	11	Unmodified	_LQEIQERKKFE_					0	0	0		ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10;ARHGAP10|p.Q205Rfs*46|1|0.05|ENSG00000071205|chr4:147866721-147866721|T/-|frameshift_variant;ARHGAP10|p.K252Ifs*56|1|0.04|ENSG00000071205|chr4:147875072-147875073|-/TTTT|frameshift_variant;ENST00000506054.5_1_4:148786038-148786212:+|nuORF	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	724.3615112304688	2	724.398815	1446.78308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.834	1	40.456	39.956	40.956	-0.37806								0	0	0	0.95196	1	14995	14995		5.2969	2.3016	1				19909	170	12604	12661	19111	19111					0.07755772234827418
LQELCYQWL	9	Unmodified	_LQELCYQWL_					0	0	0		ENST00000589630.1_1_18:32821039-32822911:+|nuORF;nc|ENSG00000186812|Q8NF99-3|ZNF397;nc|ENSG00000186812|Q8NF99-2|ZNF397;ENSG00000137185|ENST00000252207|ZSCAN9;nc|ENSG00000137185|O15535-2|ZSCAN9;ENSG00000186812|ENST00000330501|ZNF397	ENST00000589630.1_1_18:32821039-32822911:+|nuORF	ENST00000589630.1_1_18:32821039-32822911:+|nuORF	MSMS	HCT116MG_D190212_S3	3	399.1986083984375	3	399.19872	1194.57433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.668	1	52.362	51.862	52.862	-0.30639								0	0	0	0.76902	1	19916	19916		2.4985	1.1688	1				19910	3467	12605	12662	19112	19112					-0.015173476029303856
LQEPAREKY	9	Unmodified	_LQEPAREKY_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-MSMS	HCT116MG_D190212_S2	2	378.5364685058594	3	378.536501	1132.58767	-0.17406	-6.5887E-05	0.35465	0.00013425	0.18059	6.8361E-05	378.53660661180265	27.84	0.25569	27.498	27.347	27.602	-0.34201					10	4	3	0	0	0	0.5435	1	10151	10151		14.405	3.6059	1	16382000	+		19911	13477	12606	12663	19113	19113					0.026682265006684247
LQEPGTTTY	9	Unmodified	_LQEPGTTTY_					0	0	0			REV__ITSN1|p.A1087T|1|0.09|ENSG00000205726|chr21:33829653-33829653|G/A|missense_variant	REV__ITSN1|p.A1087T|1|0.09|ENSG00000205726|chr21:33829653-33829653|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1010.4871826171875	1	1009.48367	1008.47639	0.65375	0.00065995	0.16601	0.00016759	0.81976	0.00082754	1009.4836162154264	45.461	0.41033	45.089	44.936	45.346	-0.37266					11	7	2	0	0	0	0.60612	1	16814	16814		10.824	2.2306	1	2772900	+		19912	16913	12607	12664	19114	19114					-0.027508329273018717
LQEQPVGIK	9	Unmodified	_LQEQPVGIK_					0	0	0			REV__nc|ENSG00000186001|Q96II8-4|LRCH3	REV__nc|ENSG00000186001|Q96II8-4|LRCH3	MSMS	HCT116MG_D190212_S4	4	506.2975158691406	2	506.295299	1010.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.513	1	37.129	36.629	37.629	-0.3839								0	0	0	0.7663	1	13769	13769		13.906	2.7916	1		+		19913	13870	12608	12665	19115	19115					0.07118029477328491
LQETPRPGQSF	11	Unmodified	_LQETPRPGQSF_					0	0	0		ENST00000368761.9_1_6:111912933-111913005:-|nuORF	ENST00000368761.9_1_6:111912933-111913005:-|nuORF	ENST00000368761.9_1_6:111912933-111913005:-|nuORF	MSMS	HCT116MG_D190212_S3	3	630.7779541015625	2	630.322576	1258.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.925	1	31.655	31.155	32.155	-0.27028								0	0	0	0.93202	1	11682	11682		15.739	4.2439	1				19914	7405	12609	12666	19116	19116					0.01162996558082341
LQFRRNRV	8	Unmodified	_LQFRRNRV_					0	0	0			REV__nc|ENSG00000205482|P0DV79|SPDYE18	REV__nc|ENSG00000205482|P0DV79|SPDYE18	MULTI-MSMS	HCT116MG_D190212_S1	1	544.9340209960938	2	544.825424	1087.63629	0.50068	0.00027278	-0.76632	-0.00041751	-0.26564	-0.00014473	544.8248374384925	52.099	0.67817	52.099	51.756	52.434	0					35	12	5	0	0	0	0.81821	1	19830	19830		9.3474	2.0582	1	880500000	+		19915	13823	12610	12667	19117	19117					0.09598184651076735
LQFWRQRWQQQ	11	Unmodified	_LQFWRQRWQQQ_					0	0	0			REV__ENST00000442074.1_1_7:78115917-78116193:+|nuORF	REV__ENST00000442074.1_1_7:78115917-78116193:+|nuORF	MSMS	HCT116MG_D190212_S1	1	802.4130249023438	2	802.415666	1602.81678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.387	1	55.387	54.887	55.887	0								0	0	0	0.95273	1	21267	21267		4.897	3.7037	1		+		19916	15652	12611	12668	19118	19118					0.03948238517250502
LQGKAALP	8	Unmodified	_LQGKAALP_					0	0	0		ENST00000344651.4_1_12:121159414-121159822:+|nuORF	ENST00000344651.4_1_12:121159414-121159822:+|nuORF	ENST00000344651.4_1_12:121159414-121159822:+|nuORF	MSMS	HCT116MG_D190212_S4	4	399.2464294433594	2	399.247621	796.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.39	1	47.02	46.52	47.52	-0.37038								0	0	0	0.8837	1	17528	17528		2.8892	0	1				19917	7254	12612	12669	19119	19119					0.07430721076946156
LQGNRKGLW	9	Unmodified	_LQGNRKGLW_					0	0	0			REV__nc|ENSG00000214193|A4FU49-4|SH3D21	REV__nc|ENSG00000214193|A4FU49-4|SH3D21	MULTI-SECPEP	HCT116MG_D190212_S1	1	536.1654663085938	2	536.306532	1070.59851	0.52358	0.0002808	-0.8242	-0.00044202	-0.30062	-0.00016122	536.3058157641035	54.688	0.1524	54.688	54.587	54.739	0					4	2	2	0	0	0	0.26328	1	20987	20987		4.3292	2.0265	1	8971200	+		19918	17290	12613	12670	19120	19120					0.06603673665608767
LQHEVAVHVP	10	Unmodified	_LQHEVAVHVP_					0	0	0			REV__nc|ENSG00000167780|O75908-4|SOAT2	REV__nc|ENSG00000167780|O75908-4|SOAT2	MSMS	HCT116MG_D190212_S3	3	376.8766174316406	3	376.876857	1127.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.451	1	38.149	37.649	38.649	-0.30137								0	0	0	0.91906	1	14244	14244		6.6304	0	1		+		19919	13169	12614	12671	19121	19121					0.050042366001889604
LQHLLAKGKK	10	Unmodified	_LQHLLAKGKK_					0	0	0			REV__nc|ENSG00000122779|O15164-2|TRIM24	REV__nc|ENSG00000122779|O15164-2|TRIM24	MSMS	HCT116MG_D190212_S1	1	379.2488708496094	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.168	1	47.168	46.668	47.668	0								0	0	0	0.96804	1	17915	17915		0.69767	0.46182	1		+		19920	11745	12615	12672	19122	19122					0.1617396580197692
LQICCTYI	8	Unmodified	_LQICCTYI_					0	0	0			REV__FANCI|p.R66H|1|0.42|ENSG00000140525|chr15:89260752-89260752|G/A|missense_variant	REV__FANCI|p.R66H|1|0.42|ENSG00000140525|chr15:89260752-89260752|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	956.4588623046875	1	956.457987	955.45071	0.71463	0.00068352	-0.16685	-0.00015959	0.54778	0.00052393	956.4578245146295	52.664	0.3107	52.477	52.295	52.606	-0.18725					9	5	2	0	0	0	0.48901	1	20221	20221		42.095	1.646	1	19114000	+		19921	12299	12616	12673	19123	19123					-0.028797219749321812
LQKELLAAKK	10	Unmodified	_LQKELLAAKK_					0	0	0			REV__nc|ENSG00000165325|Q05D60-2|DEUP1	REV__nc|ENSG00000165325|Q05D60-2|DEUP1	MSMS	HCT116MG_D190212_S4	4	381.2495422363281	3	381.248291	1140.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.062	1	31.687	31.187	32.187	-0.37529								0	0	0	0.96769	1	11662	11662		0.77653	0.50751	1		+		19922	13050	12617	12674	19124	19124					0.15831126362263603
LQKKKKRKQRS	11	Unmodified	_LQKKKKRKQRS_					0	0	0		ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ENSG00000163848|ENST00000360647|ZNF148	ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant	ZNF148|p.K284Nfs*2|1|0.43|ENSG00000163848|chr3:125233874-125233874|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	714.4700317382812	2	714.467701	1426.92085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.727	1	45.626	45.126	46.126	-0.1014								0	0	0	0.95954	1	17398	17398		1.3295	0.13619	1				19923	4641	12618	12675	19125	19125					0.22446565344785085
LQKLLLRRV	9	Unmodified	_LQKLLLRRV_					0	0	0		NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant	NLRP8|p.F1005Sfs*20|1|0.05|ENSG00000179709|chr19:55979528-55979528|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	380.2652893066406	3	380.264276	1137.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.174	1	54.882	54.382	55.382	-0.2918								0	0	0	0.77019	1	20923	20923		0.23584	0	1				19924	5566	12619	12676	19126	19126					0.20762245072978658
LQKLRQRL	8	Unmodified	_LQKLRQRL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MSMS	HCT116MG_D190212_S1	1	352.23358154296875	3	352.232975	1053.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.426	1	21.426	20.926	21.926	0								0	0	0	0.8837	1	7536	7536		3.9444	0	1				19925	3513	12620	12677	19127	19127					0.15240525970693852
LQKNRARRRQ	10	Unmodified	_LQKNRARRRQ_					0	0	0		sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1	sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1	sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	442.604736328125	3	442.604354	1324.79123	0.15189	6.7229E-05	0.78191	0.00034608	0.9338	0.00041331	442.604687874779	54.956	0.30587	54.956	54.841	55.146	0					10	5	3	0	0	0	0.88715	1	21121	21121		1.7423	0.41263	1	38891000			19926	18219	12621	12678	19128	19128					0.14182808785494672
LQKQLGPRKG	10	Unmodified	_LQKQLGPRKG_					0	0	0		FRMPD3|p.E621K|1|0.08|ENSG00000147234|chrX:107597641-107597641|G/A|missense_variant	FRMPD3|p.E621K|1|0.08|ENSG00000147234|chrX:107597641-107597641|G/A|missense_variant	FRMPD3|p.E621K|1|0.08|ENSG00000147234|chrX:107597641-107597641|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	563.2594604492188	2	562.848564	1123.68258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.448	1	52.448	51.948	52.948	0								0	0	0	0.92607	1	20061	20061		10.074	0.6908	1				19927	9167	12622	12679	19129	19129					0.12568204762487767
LQKRIRYV	8	Unmodified	_LQKRIRYV_					0	0	0		ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2;ANKLE2|p.A390T|1|0.36|ENSG00000176915|chr12:132747894-132747894|C/T|missense_variant	ENSG00000176915|ENST00000357997|ANKLE2	ENSG00000176915|ENST00000357997|ANKLE2	MSMS	HCT116MG_D190212_S2	2	359.2286071777344	3	359.229342	1074.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.401	1	30.117	29.617	30.617	-0.28453								0	0	0	0.8837	1	11175	11175		7.2892	1.9923	1				19928	5440	12623	12680	19130	19130					0.13185123596394988
LQKVKAVKH	9	Unmodified	_LQKVKAVKH_					0	0	0			REV__nc|ENSG00000165240|Q04656-4|ATP7A	REV__nc|ENSG00000165240|Q04656-4|ATP7A	MULTI-MSMS	HCT116MG_D190212_S2	2	1050.678955078125	1	1050.67823	1049.67095	0.73384	0.00077103	0.52026	0.00054663	1.2541	0.0013177	1050.67823729749	60.341	0.92539	60.186	59.801	60.727	-0.15441					24	17	2	0	0	0	0.74917	1	23308	23308		1.8442	1.1539	1	33204000	+		19929	10010	12624	12681	19131	19131					0.1481000773917458
LQLEDSAKY	9	Unmodified	_LQLEDSAKY_					0	0	0		nc|ENSG00000211804|A0A1B0GX56|TRDV1	nc|ENSG00000211804|A0A1B0GX56|TRDV1	nc|ENSG00000211804|A0A1B0GX56|TRDV1	MSMS	HCT116MG_D190212_S1	1	533.7740478515625	2	533.774396	1065.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.894	1	36.894	36.394	37.394	0								0	0	0	0.7663	1	13767	13767		13.906	1.6654	1				19930	9629	12625	12682	19132	19132					0.004094289981367183
LQLFLVLR	8	Unmodified	_LQLFLVLR_					0	0	0			REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF	REV__ENST00000592375.6_1_19:11488662-11489328:-|nuORF	MSMS	HCT116MG_D190212_S3	3	501.3273620605469	2	501.328945	1000.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.075	1	55.787	55.287	56.287	-0.28773								0	0	0	0.8837	1	21280	21280		2.3027	0	1		+		19931	16698	12626	12683	19133	19133					0.14304104478924273
LQLIRIFY	8	Unmodified	_LQLIRIFY_					0	0	0			REV__TLR1|p.S260Y|1|0.23|ENSG00000174125|chr4:38798053-38798053|G/T|missense_variant	REV__TLR1|p.S260Y|1|0.23|ENSG00000174125|chr4:38798053-38798053|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	533.3282470703125	2	533.326402	1064.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.064	1	36.763	36.263	37.263	-0.30122								0	0	0	0.8837	1	13716	13716		5.7604	0	1		+		19932	17639	12627	12684	19134	19134					0.10851800616319451
LQLKMKKV	8	Unmodified	_LQLKMKKV_					0	0	0			REV__TTC21B|p.D262Ifs*2|1|0.39|ENSG00000123607|chr2:165932984-165932984|C/-|frameshift_variant	REV__TTC21B|p.D262Ifs*2|1|0.39|ENSG00000123607|chr2:165932984-165932984|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	494.3253173828125	2	494.322805	986.631058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.625	1	58.625	58.125	59.125	0								0	0	0	0.8837	1	22589	22589		0.69038	0	1		+		19933	11770	12628	12685	19135	19135					0.13720744744250624
LQLLETSLSYY	11	Unmodified	_LQLLETSLSYY_					0	0	0		ENST00000437553.6_1_14:20784671-20794896:-|nuORF	ENST00000437553.6_1_14:20784671-20794896:-|nuORF	ENST00000437553.6_1_14:20784671-20794896:-|nuORF	MSMS	HCT116MG_D190212_S3	3	665.3512573242188	2	665.350468	1328.68638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.756	1	38.454	37.954	38.954	-0.30137								0	0	0	0.93552	1	14367	14367		13.906	0	1				19934	7889	12629	12686	19136	19136					0.035187849550538886
LQLPLSRVIHK	11	Unmodified	_LQLPLSRVIHK_					0	0	0			REV__ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant	REV__ZSWIM2|p.K482Nfs*2|2|0.2|ENSG00000163012|chr2:186828440-186828440|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	652.4119873046875	2	652.414072	1302.81359	0.61755	0.0004029	-2.838	-0.0018516	-2.2205	-0.0014487	652.4136569153188	60.901	2.6619	60.901	60.052	62.714	0					100	51	3	0	0	0	0.74191	1	23863	23863		2.7352	1.4057	1	36978000	+		19935	12906	12630	12687	19137	19137					0.17429595410567345
LQLRRQYQ	8	Unmodified	_LQLRRQYQ_					0	0	0		ENST00000513298.5_1_5:145838810-145849312:+|nuORF;ENST00000507175.5_1_5:145838810-145843302:+|nuORF	ENST00000513298.5_1_5:145838810-145849312:+|nuORF	ENST00000513298.5_1_5:145838810-145849312:+|nuORF	MSMS	HCT116MG_D190212_S2	2	552.8153076171875	2	552.817264	1103.61998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.434	1	30.149	29.649	30.649	-0.28453								0	0	0	0.87079	1	11189	11189		16.942	1.0951	1				19936	8510	12631	12688	19138	19138					0.07231058694310377
LQNEESSVQ	9	Unmodified	_LQNEESSVQ_					0	0	0		nc|ENSG00000183347|Q6ZN66-2|GBP6;GBP6|p.N587Kfs*2|1|0.28|ENSG00000183347|chr1:89385321-89385322|-/A|frameshift_variant;GBP6|p.N587Mfs*18|2|0.17|ENSG00000183347|chr1:89385322-89385322|A/-|frameshift_variant;ENSG00000183347|ENST00000370456|GBP6	nc|ENSG00000183347|Q6ZN66-2|GBP6	nc|ENSG00000183347|Q6ZN66-2|GBP6	MULTI-SECPEP	HCT116MG_D190212_S2	2	517.2529907226562	2	517.24346	1032.47237	0.2	0.00010345	0.039291	2.0323E-05	0.23929	0.00012377	517.2434023111431	25.654	0.67579	25.285	25.082	25.758	-0.36914					35	12	4	0	0	0	0.22781	1	9177	9177		16.942	16.942	1	183420000			19937	5713	12632	12689	19139	19139					-0.04256922420995579
LQNLTQEEE	9	Unmodified	_LQNLTQEEE_					0	0	0			REV__nc|ENSG00000197912|Q9UQ90-2|SPG7	REV__nc|ENSG00000197912|Q9UQ90-2|SPG7	MSMS	HCT116MG_D190212_S1	1	552.2666625976562	2	552.264393	1102.51423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.129	1	25.129	24.629	25.629	0								0	0	0	0.76575	1	9025	9025		15.847	0	1		+		19938	14096	12633	12690	19140	19140					-0.03292366732443952
LQPTWLWWRRW	11	Unmodified	_LQPTWLWWRRW_					0	0	0			REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	REV__ENST00000308064.6_1_11:45673544-45686758:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	814.4362182617188	2	814.43587	1626.85719	1.0438	0.00085007	-0.47183	-0.00038428	0.57192	0.00046579	814.4347619787555	28.17	0.31436	28.17	28.06	28.375	0					9	5	3	0	0	0	0.74191	1	10311	10311		0.26902	0.26902	1	13477000	+		19939	14819	12634	12691	19141	19141					0.06883204907649088
LQQAYRRRWWM	11	Unmodified	_LQQAYRRRWWM_					0	0	0		ENSG00000149150|ENST00000278426|SLC43A1;nc|ENSG00000149150|O75387-2|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	MSMS	HCT116MG_D190212_S4	4	797.4156494140625	2	797.414611	1592.81467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.144	1	24.865	24.365	25.365	-0.27958								0	0	0	0.95954	1	8896	8896		1.3295	0.9789	1				19940	4044	12635	12692	19142	19142					0.04197486507769099
LQQEKNYKQ	9	Unmodified	_LQQEKNYKQ_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-SECPEP	HCT116MG_D190212_S2	2	590.3036499023438	2	589.811845	1177.60914	0.30186	0.00017804	0.48072	0.00028353	0.78258	0.00046157	589.8120332665677	30.44	0.35864	30.156	30.028	30.387	-0.28453					8	6	2	0	0	0	0.22393	1	11259	11259		5.7319	0	1	59928000	+		19941	14308	12636	12693	19143	19143					0.027436115293539842
LQQEQRKADTH	11	Unmodified	_LQQEQRKADTH_					0	0	0		nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;nc|ENSG00000197114|Q8N5A5-4|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	MSMS	HCT116MG_D190212_S4	4	677.3442993164062	2	677.347114	1352.67968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.266	1	43.892	43.392	44.392	-0.37373								0	0	0	0.94755	1	16302	16302		7.609	2.3121	1				19942	6120	12637	12694	19144	19144					0.01744284847018207
LQQKRETV	8	Unmodified	_LQQKRETV_					0	0	0			REV__DMD|p.L2185Wfs*4|1|0.05|ENSG00000198947|chrX:31968399-31968399|A/-|frameshift_variant	REV__DMD|p.L2185Wfs*4|1|0.05|ENSG00000198947|chrX:31968399-31968399|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	501.2927551269531	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.295	1	43.222	42.722	43.722	-0.073376								0	0	0	0.72655	1	16412	16412		28.487	3.0875	1		+		19943	10371	12638	12695	19145	19145					0.06628261191804086
LQQSALIEPN	10	Unmodified	_LQQSALIEPN_					0	0	0			REV__ENSG00000198569|ENST00000673835|SLC34A3	REV__ENSG00000198569|ENST00000673835|SLC34A3	MSMS	HCT116MG_D190212_S1	1	556.7611083984375	2	556.800946	1111.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.924	1	39.924	39.424	40.424	0								0	0	0	0.85631	1	14991	14991		21.537	3.3906	1		+		19944	14132	12639	12696	19146	19146					0.03600806780787025
LQQSSYIQGPV	11	Unmodified	_LQQSSYIQGPV_					0	0	0			REV__WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant	REV__WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	610.31884765625	2	610.319502	1218.62445	0.42018	0.00025644	-1.572	-0.00095943	-1.1518	-0.00070298	610.3186995203623	42.037	0.36391	41.735	41.52	41.884	-0.30257					11	6	2	0	0	0	0.73844	1	15661	15661		7.609	0.50723	1	4305900	+		19945	14039	12640	12697	19147	19147					0.023884783265430087
LQREREQRVLG	11	Unmodified	_LQREREQRVLG_					0	0	0		ENST00000370269.3_1_10:102672967-102675772:+|nuORF;ENST00000609386.1_1_10:102672967-102673027:+|nuORF	ENST00000370269.3_1_10:102672967-102675772:+|nuORF	ENST00000370269.3_1_10:102672967-102675772:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	692.3936157226562	2	692.394399	1382.77424	0.71123	0.00049245	-0.10037	-6.9494E-05	0.61086	0.00042296	692.3940522997952	16.291	0.20814	16.291	16.161	16.369	0					5	3	2	0	0	0	0.7332	1	5490	5490		9.544	0.79857	1	6936300			19946	7422	12641	12698	19148	19148					0.0981684338901232
LQRHHGHIP	9	Unmodified	_LQRHHGHIP_					0	0	0			REV__UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant	REV__UBQLN2|p.N281Sfs*92|1|0.34|ENSG00000188021|chrX:56564713-56564725|GAATGCCGCACAA/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	365.22772216796875	3	365.537058	1093.58934	0.051207	1.8718E-05	-0.075138	-2.7466E-05	-0.023931	-8.7475E-06	365.53700576246746	28.139	0.20785	28.139	28.008	28.216	0					5	3	2	0	0	0	0.26893	1	10189	10189		1.1933	0	1	5861800	+		19947	18038	12642	12699	19149	19149					0.046293250999497104
LQRLFPPV	8	Unmodified	_LQRLFPPV_					0	0	0		ENSG00000104714|ENST00000262109|ERICH1;ERICH1|p.F123Ifs*2|1|0.24|ENSG00000104714|chr8:673985-673986|-/T|frameshift_variant;ERICH1|p.R163Gfs*3|2|0.2|ENSG00000104714|chr8:673865-673865|T/-|frameshift_variant	ENSG00000104714|ENST00000262109|ERICH1	ENSG00000104714|ENST00000262109|ERICH1	MSMS	HCT116MG_D190212_S3	3	485.29547119140625	2	485.297645	968.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.618	1	37.317	36.817	37.817	-0.30137								0	0	0	0.8837	1	13939	13939		9.3474	0	1				19948	1945	12643	12700	19150	19150					0.09518958410740197
LQRQKRKQR	9	Unmodified	_LQRQKRKQR_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	HCT116MG_D190212_S1	1	620.3854370117188	2	620.889087	1239.76362	0.50249	0.00031199	-1.1102	-0.00068929	-0.60768	-0.0003773	620.8881516194039	42.992	0.62377	42.992	42.588	43.212	0					15	11	2	0	0	0	0.26734	1	16124	16124		1.8442	1.4435	1	7396300			19949	4414	12644	12701	19151	19151					0.15332905525247043
LQRRQIARRRR	11	Unmodified	_LQRRQIARRRR_					0	0	0		ENST00000361837.8_1_16:2510099-2510671:+|nuORF	ENST00000361837.8_1_16:2510099-2510671:+|nuORF	ENST00000361837.8_1_16:2510099-2510671:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	504.2984619140625	3	503.653819	1507.93963	0.46389	0.00023364	-0.014945	-7.527E-06	0.44894	0.00022611	503.65371367000273	55.121	0.20322	55.121	55.044	55.247	0					5	3	2	0	0	0	0.36629	1	21127	21127		0.40827	0	1	68154000			19950	7365	12645	12702	19152	19152					0.20597539759182837
LQRRYEAIEEK	11	Unmodified	_LQRRYEAIEEK_					0	0	0			REV__NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant	REV__NEFM|p.K721Rfs*18|1|0.25|ENSG00000104722|chr8:24918013-24918013|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	717.8898315429688	2	717.888615	1433.76268	0.93421	0.00067066	-0.3301	-0.00023697	0.60411	0.00043369	717.8883372006815	36.458	0.89742	36.072	35.433	36.331	-0.38558					41	18	3	0	0	0	0.7298	1	13161	13161		10.8	3.1906	1	10598000	+		19951	11218	12646	12703	19153	19153					0.06314601575013512
LQRTPKIQ	8	Unmodified	_LQRTPKIQ_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S2	2	492.3035583496094	2	492.303458	982.592364	0.29526	0.00014536	-0.095643	-4.7085E-05	0.19961	9.827E-05	492.30334876597016	20.732	0.42349	20.353	20.023	20.446	-0.37949					15	7	3	0	0	0	0.13819	1	7234	7234		86.332	0	1	8768300			19952	241	12647	12704	19154	19154					0.10037155434076794
LQRTPKIQVY	10	Unmodified	_LQRTPKIQVY_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S1	1	416.2496337890625	3	415.915312	1244.72411	-0.17912	-7.4499E-05	0.27864	0.00011589	0.099515	4.139E-05	415.91537897546954	32.144	0.52095	32.144	31.857	32.378	0					16	9	3	0	0	0	0.24395	1	11813	11813		41.347	0	1	15262000			19953	241	12648	12705	19155	19155					0.11153340731175376
LQRTPKIQVY	10	Unmodified	_LQRTPKIQVY_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S1	1	623.3694458007812	2	623.36933	1244.72411	0.47125	0.00029376	0.21952	0.00013684	0.69077	0.0004306	623.3695416253998	32.144	0.31238	32.144	31.961	32.274	0					9	5	2	0	0	0	0.048437	1	11833	11833		88.364	0	1	14877000			19954	241	12648	12705	19156	19156					0.11153340731175376
LQRTPKIQVY	10	Unmodified	_LQRTPKIQVY_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S2	2	416.2491760253906	3	415.915312	1244.72411	-0.14174	-5.8951E-05	0.2079	8.6467E-05	0.066157	2.7516E-05	415.9153367393977	32.41	0.46841	32.18	31.89	32.359	-0.23009					21	8	4	0	0	0	0.066546	1	11984	11984		62.78	0	1	28448000			19955	241	12648	12705	19157	19157					0.11153340731175376
LQRTPKIQVY	10	Unmodified	_LQRTPKIQVY_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S2	2	623.3697509765625	2	623.36933	1244.72411	0.38207	0.00023817	0.051763	3.2267E-05	0.43384	0.00027044	623.3694119742071	32.406	0.46804	32.176	31.838	32.306	-0.23009					16	8	3	0	0	0	0.017977	1	11997	11997		124.95	0	1	35744000			19956	241	12648	12705	19158	19158					0.11153340731175376
LQRTPKIQVY	10	Unmodified	_LQRTPKIQVY_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S3	3	415.91510009765625	3	415.915312	1244.72411	0.067339	2.8007E-05	-0.37993	-0.00015802	-0.31259	-0.00013001	415.91529155890333	32.463	0.52091	32.184	31.942	32.463	-0.2784					19	9	3	0	0	0	0.37453	2	11891	11871;11891		32.616	0	1	7521100			19957	241	12648	12705	19159;19160	19160					0.11153340731175376
LQRTPKIQVY	10	Unmodified	_LQRTPKIQVY_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S3	3	623.3689575195312	2	623.36933	1244.72411	0.41734	0.00026016	-0.14534	-9.0603E-05	0.272	0.00016955	623.3691470268354	32.486	0.36483	32.207	31.942	32.306	-0.27841					12	6	3	0	0	0	0.048437	1	11909	11909		88.364	0	1	7554600			19958	241	12648	12705	19161	19161					0.11153340731175376
LQRTPKIQVY	10	Unmodified	_LQRTPKIQVY_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S4	4	415.9153747558594	3	415.915312	1244.72411	0.13456	5.5965E-05	-0.25475	-0.00010595	-0.12019	-4.999E-05	415.91522597273837	32.562	0.41531	32.183	31.949	32.364	-0.37924					11	7	2	0	0	0	0.42802	1	11871	11871		41.347	0	1	5934800			19959	241	12648	12705	19162	19162					0.11153340731175376
LQRTPKIQVY	10	Unmodified	_LQRTPKIQVY_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S4	4	623.870849609375	2	623.36933	1244.72411	0.30411	0.00018957	-0.30071	-0.00018745	0.0034046	2.1223E-06	623.3692104170464	32.614	0.51907	32.234	31.897	32.416	-0.37924					12	9	2	0	0	0	0.37453	1	11898	11898		43.982	0	1	5038300			19960	241	12648	12705	19163	19163					0.11153340731175376
LQRTPKIQVYS	11	Unmodified	_LQRTPKIQVYS_					0	0	0		B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	B2M|p.L13_I21del|1|0.14|ENSG00000166710|chr15:44711581-44711607|TACTCTCTCTTTCTGGCCTGGAGGCTA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S2	2	666.8848876953125	2	666.885344	1331.75613	0.088817	5.923E-05	0.67355	0.00044918	0.76236	0.00050841	666.8856049306943	30.404	0.30829	30.119	29.925	30.233	-0.28453					9	5	2	0	0	0	0.03446	2	11186	11157;11186		101.12	0	1	40305000			19961	241	12649	12706	19164;19165	19165					0.10352708414325207
LQSKAEPQAQP	11	Unmodified	_LQSKAEPQAQP_					0	0	0		BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	599.3189697265625	2	598.817127	1195.6197	0.29567	0.00017705	-0.10047	-6.0161E-05	0.1952	0.00011689	598.8170469019361	17.409	0.31202	17.49	17.273	17.585	0.081358					7	5	2	0	0	0	0.34063	1	5873	5873		17.443	2.1942	1	3015500			19962	284	12650	12707	19166	19166					0.02971594183804882
LQSLKEMYQ	9	Unmodified	_LQSLKEMYQ_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MSMS	HCT116MG_D190212_S2	2	570.2938232421875	2	570.291899	1138.56925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.97	1	34.811	34.311	35.311	-0.15834								0	0	0	0.69648	1	13028	13028		19.257	3.4098	1				19963	4443	12651	12708	19167	19167					0.005503485344206638
LQSQARMW	8	Unmodified	_LQSQARMW_					0	0	0		IQCF1|p.R139H|1|0.47|ENSG00000173389|chr3:51895092-51895092|C/T|missense_variant;ENSG00000173389|ENST00000310914|IQCF1	IQCF1|p.R139H|1|0.47|ENSG00000173389|chr3:51895092-51895092|C/T|missense_variant	IQCF1|p.R139H|1|0.47|ENSG00000173389|chr3:51895092-51895092|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	510.25616455078125	2	510.258194	1018.50183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.565	1	29.565	29.065	30.065	0								0	0	0	0.54805	1	10810	10810		40.449	2.2974	1				19964	5285	12652	12709	19168	19168					-0.006676368858506976
LQSQKQKIREL	11	Unmodified	_LQSQKQKIREL_					0	0	0			REV__ENST00000453595.1_1_X:36980271-36981156:-|nuORF	REV__ENST00000453595.1_1_X:36980271-36981156:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	457.60821533203125	3	457.608659	1369.80415	-0.043922	-2.0099E-05	-0.84775	-0.00038794	-0.89168	-0.00040804	457.6081613401768	51.264	0.97519	51.264	50.574	51.549	0					39	18	4	0	0	0	0.74191	1	19490	19490		0.40827	0	1	56527000	+		19965	14114	12653	12710	19169	19169					0.1340378233435331
LQSSAQKLVPH	11	Unmodified	_LQSSAQKLVPH_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MSMS	HCT116MG_D190212_S4	4	403.1961975097656	3	403.2313	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.622	1	63.383	62.883	63.883	-0.2389								0	0	0	0.9619	1	23984	23984		0.094841	0.094841	1		+		19966	17202	12654	12711	19170	19170					0.07700177317406087
LQSVAIPAA	9	Unmodified	_LQSVAIPAA_					0	0	0			REV__nc|ENSG00000140527|Q6P2C0-2|WDR93	REV__nc|ENSG00000140527|Q6P2C0-2|WDR93	MULTI-MSMS	HCT116MG_D190212_S3	3	435.25811767578125	2	435.258185	868.501818	-0.11521	-5.0148E-05	0.097414	4.24E-05	-0.017801	-7.7481E-06	435.25808285207626	36.378	0.36407	36.078	35.886	36.25	-0.30056					10	6	2	0	0	0	0.14171	1	13449	13449		49.933	0	1	2513200	+		19967	12300	12655	12712	19171	19171					0.062306863857997996
LQSVGPRR	8	Unmodified	_LQSVGPRR_					0	0	0		ENST00000286800.7_1_21:30671193-30693553:+|nuORF	ENST00000286800.7_1_21:30671193-30693553:+|nuORF	ENST00000286800.7_1_21:30671193-30693553:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	456.39776611328125	2	456.772326	911.530098	0.1677	7.6602E-05	0.40139	0.00018334	0.56909	0.00025994	456.77231693910875	51.131	0.88174	50.777	50.42	51.301	-0.35483					28	16	2	0	0	0	0.74206	1	18921	18921		18.135	0	1	3689100			19968	6951	12656	12713	19172	19172					0.07079429085752054
LQSVGPRR	8	Unmodified	_LQSVGPRR_					0	0	0		ENST00000286800.7_1_21:30671193-30693553:+|nuORF	ENST00000286800.7_1_21:30671193-30693553:+|nuORF	ENST00000286800.7_1_21:30671193-30693553:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	456.772326	911.530098	0.28776	0.00013144	0.19318	8.8239E-05	0.48094	0.00021968	456.7724172891528	51.195	0.57689	50.883	50.753	51.33	-0.31166	-0.011897	5.4674E-05	NaN	18.135	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1429400			19969	6951	12656	12713							0.07079429085752054
LQVLSTVL	8	Unmodified	_LQVLSTVL_					0	0	0		ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	MSMS	HCT116MG_D190212_S4	4	436.7747497558594	2	436.776211	871.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.942	1	48.577	48.077	49.077	-0.365								0	0	0	0.8837	1	18137	18137		5.2307	0	1				19970	6155	12657	12714	19173	19173					0.0969614356264401
LRALKFQK	8	Unmodified	_LRALKFQK_					0	0	0		SPTA1|p.Q162K|1|0.39|ENSG00000163554|chr1:158681574-158681574|G/T|missense_variant	SPTA1|p.Q162K|1|0.39|ENSG00000163554|chr1:158681574-158681574|G/T|missense_variant	SPTA1|p.Q162K|1|0.39|ENSG00000163554|chr1:158681574-158681574|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	502.234130859375	2	502.324194	1002.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.829	1	42.454	41.954	42.954	-0.37493								0	0	0	0.8837	1	15756	15756		4.756	0	1				19971	18234	12658	12715	19174	19174					0.13262336193417923
LRALKLHT	8	Unmodified	_LRALKLHT_					0	0	0		nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF	nc|ENSG00000160949|Q96HA7-2|TONSL	nc|ENSG00000160949|Q96HA7-2|TONSL	MSMS	HCT116MG_D190212_S3	3	476.3067932128906	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.597	1	47.282	46.782	47.782	-0.31525								0	0	0	0.8837	1	17879	17879		2.3027	0	1				19972	4470	12659	12716	19175	19175					0.12525763159305825
LRALKRAKHA	10	Unmodified	_LRALKRAKHA_					0	0	0			REV__nc|ENSG00000069535|P27338-2|MAOB	REV__nc|ENSG00000069535|P27338-2|MAOB	MULTI-SECPEP	HCT116MG_D190212_S1	1	582.3955078125	2	582.377823	1162.74109	0.448	0.0002609	-1.2064	-0.0007026	-0.75843	-0.00044169	582.3770093765103	58.552	0.30407	58.552	58.362	58.666	0					8	5	2	0	0	0	0.31179	1	22602	22602		1.4819	1.4819	1	17081000	+		19973	10746	12660	12717	19176	19176					0.16623306127644355
LRASAETLH	9	Unmodified	_LRASAETLH_					0	0	0		nc|ENSG00000185917|Q9NVD3-3|SETD4;ENSG00000185917|ENST00000332131|SETD4;ENST00000487297.5_1_21:37408417-37414196:-|nuORF	nc|ENSG00000185917|Q9NVD3-3|SETD4	nc|ENSG00000185917|Q9NVD3-3|SETD4	MSMS	HCT116MG_D190212_S1	1	499.2751770019531	2	499.274898	996.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.802	1	38.802	38.302	39.302	0								0	0	0	0.76913	1	14538	14538		3.9444	0	1				19974	5854	12661	12718	19177	19177					0.03683688157718734
LRCIFRVV	8	Unmodified	_LRCIFRVV_					0	0	0			REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	MSMS	HCT116MG_D190212_S4	4	503.30584716796875	2	503.304947	1004.59534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.744	1	59.473	58.973	59.973	-0.27156								0	0	0	0.8837	1	22491	22491		0.79363	0	1		+		19975	13174	12662	12719	19178	19178					0.09322707287242338
LRCYYENQP	9	Unmodified	_LRCYYENQP_					0	0	0			REV__ENST00000557056.5_1_14:24787624-24791466:-|nuORF	REV__ENST00000557056.5_1_14:24787624-24791466:-|nuORF	MSMS	HCT116MG_D190212_S4	4	593.61376953125	2	593.271498	1184.52844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.435	1	16.271	15.771	16.771	-0.16364								0	0	0	0.76739	1	5379	5379		10.074	0.6908	1		+		19976	16468	12663	12720	19179	19179					-0.056439927851897664
LRDEFLVKI	9	Unmodified	_LRDEFLVKI_					0	0	0		ENST00000418777.5_1_9:16418989-16435690:-|nuORF;ENSG00000173068|ENST00000380672|BNC2	ENST00000418777.5_1_9:16418989-16435690:-|nuORF	ENST00000418777.5_1_9:16418989-16435690:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	567.343017578125	2	566.839874	1131.66519	0.21297	0.00012072	-1.1226	-0.00063631	-0.90958	-0.00051559	567.3411001161619	51.231	0.36117	51.231	50.988	51.349	0					9	6	2	0	0	0	0.53594	1	19560	19560		19.626	3.0601	1	8840200			19977	5271	12664	12721	19180	19180					0.10462864436863129
LRDRLPKKQ	9	Unmodified	_LRDRLPKKQ_					0	0	0		ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.Q1385Sfs*6|1|0.26|ENSG00000085224|chrX:77656621-77656622|-/A|frameshift_variant;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.K993Rfs*10|1|0.26|ENSG00000085224|chrX:77682278-77682278|T/-|frameshift_variant;ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant;ATRX|p.I1049Nfs*4|1|0.15|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant	ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	385.2427673339844	3	385.243652	1152.70913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.875	1	34.717	34.217	35.217	-0.15834								0	0	0	0.76694	1	12990	12990		7.609	3.7326	1				19978	231	12665	12722	19181	19181					0.1388789365385037
LREAEPGPA	9	Unmodified	_LREAEPGPA_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MSMS	HCT116MG_D190212_S4	4	470.24859619140625	2	470.248349	938.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.549	1	26.248	25.748	26.748	-0.30087								0	0	0	0.67173	1	9463	9463		20.454	3.5113	1				19979	6456	12666	12723	19182	19182					0.010443103750503724
LREDGGSW	8	Unmodified	_LREDGGSW_					0	0	0			REV__ENST00000568746.5_1_16:27325322-27352523:+|nuORF	REV__ENST00000568746.5_1_16:27325322-27352523:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	460.2169494628906	2	460.217049	918.419545	0.25015	0.00011512	0.16201	7.4559E-05	0.41216	0.00018968	460.2171310812699	36.643	0.36188	36.528	36.292	36.653	-0.11479					12	6	3	0	0	0	0.51336	1	13694	13694		39.957	0	1	22087000	+		19980	16561	12667	12724	19183	19183					-0.04292835693127017
LRENNKHDNN	10	Unmodified	_LRENNKHDNN_					0	0	0			REV__PARP15|p.K547N|1|0.39|ENSG00000173200|chr3:122635088-122635088|G/T|missense_variant	REV__PARP15|p.K547N|1|0.39|ENSG00000173200|chr3:122635088-122635088|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	627.3004150390625	2	627.302707	1252.59086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.069	1	35.069	34.569	35.569	0								0	0	0	0.93202	1	13033	13033		8.7454	1.4562	1		+		19981	17383	12668	12725	19184	19184					-0.025331303926122928
LRESQLAAA	9	Unmodified	_LRESQLAAA_					0	0	0			REV__ENST00000419769.6_1_10:127430814-127452038:+|nuORF	REV__ENST00000419769.6_1_10:127430814-127452038:+|nuORF	MSMS	HCT116MG_D190212_S2	2	479.76983642578125	2	479.769448	957.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.487	1	20.108	19.608	20.608	-0.37949								0	0	0	0.2496	1	7162	7162		43.772	1.8168	1		+		19982	11332	12669	12726	19185	19185					0.043882857834205424
LRFDIRKAGTL	11	Unmodified	_LRFDIRKAGTL_					0	0	0		ENST00000486520.1_1_21:48081621-48084236:+|nuORF;nc|ENSG00000160310|P55345-3|PRMT2;ENSG00000160310|ENST00000355680|PRMT2	ENST00000486520.1_1_21:48081621-48084236:+|nuORF	ENST00000486520.1_1_21:48081621-48084236:+|nuORF	MSMS	HCT116MG_D190212_S2	2	645.3872680664062	2	645.388054	1288.76155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.227	1	58.056	57.556	58.556	-0.1703								0	0	0	0.94755	1	22498	22498		7.609	2.7119	1				19983	4446	12670	12727	19186	19186					0.1287243199678869
LRFGNQTLNY	10	Unmodified	_LRFGNQTLNY_					0	0	0		ENST00000491856.1_1_7:29438037-29440456:+|nuORF;CHN2|p.P439Lfs*6|1|0.18|ENSG00000106069|chr7:29512640-29512640|C/-|frameshift_variant;ENSG00000106069|ENST00000222792|CHN2;nc|ENSG00000106069|P52757-9|CHN2	ENST00000491856.1_1_7:29438037-29440456:+|nuORF	ENST00000491856.1_1_7:29438037-29440456:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	613.384765625	2	613.319837	1224.62512	0.59495	0.00036489	-0.082069	-5.0334E-05	0.51288	0.00031456	613.3198935870716	26.218	0.20678	25.856	25.766	25.972	-0.36164					5	3	2	0	0	0	0.86862	1	9446	9446		6.2058	0	1	6445300			19984	437	12671	12728	19187	19187					0.021793177662857488
LRFKKKKKK	9	Unmodified	_LRFKKKKKK_					0	0	0		ENST00000341776.6_1_6:15521185-15521434:+|nuORF	ENST00000341776.6_1_6:15521185-15521434:+|nuORF	ENST00000341776.6_1_6:15521185-15521434:+|nuORF	MSMS	HCT116MG_D190212_S3	3	602.4229125976562	2	602.424242	1202.83393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.38	1	40.079	39.579	40.579	-0.30161								0	0	0	0.77025	1	14989	14989		0	0	1				19985	7224	12672	12729	19188	19188					0.24062810861005346
LRFRYIILK	9	Unmodified	_LRFRYIILK_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MSMS	HCT116MG_D190212_S1	1	407.93267822265625	3	407.932526	1220.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6868	1	5.6868	5.1868	6.1868	0								0	0	0	0.77019	1	1710	1710		0.23584	0	1				19986	9392	12673	12730	19189	19189					0.17419129215750218
LRFRYIILK	9	Unmodified	_LRFRYIILK_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MSMS	HCT116MG_D190212_S1	1	407.932861328125	3	407.932526	1220.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3252	1	6.3252	5.8252	6.8252	0								0	0	0	0.77019	1	1907	1907		0.23584	0	1				19987	9392	12673	12730	19190	19190					0.17419129215750218
LRFRYIILK	9	Unmodified	_LRFRYIILK_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MSMS	HCT116MG_D190212_S1	1	407.93292236328125	3	407.932526	1220.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4573	1	8.4573	7.9573	8.9573	0								0	0	0	0.77019	1	2556	2556		0.23584	0	1				19988	9392	12673	12730	19191	19191					0.17419129215750218
LRGRPLGPV	9	Unmodified	_LRGRPLGPV_					0	0	0		ENSG00000184302|ENST00000327720|SIX6;ENSG00000138083|ENST00000260653|SIX3	ENSG00000184302|ENST00000327720|SIX6	ENSG00000184302|ENST00000327720|SIX6	MSMS	HCT116MG_D190212_S3	3	482.8083190917969	2	482.806168	963.597784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.407	1	48.091	47.591	48.591	-0.31596								0	0	0	0.7689	1	18205	18205		4.756	0.42677	1				19989	3530	12674	12731	19192	19192					0.11452879016553652
LRGRSMERT	9	Unmodified	_LRGRSMERT_					0	0	0			REV__ENST00000311177.6_1_17:46699388-46699802:-|nuORF	REV__ENST00000311177.6_1_17:46699388-46699802:-|nuORF	MSMS	HCT116MG_D190212_S1	1	369.2118225097656	3	369.201346	1104.58221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.396	1	46.396	45.896	46.896	0								0	0	0	0.76995	1	17602	17602		1.0715	0	1		+		19990	14833	12675	12732	19193	19193					0.034102244371979396
LRGYDWAVKRL	11	Unmodified	_LRGYDWAVKRL_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MSMS	HCT116MG_D190212_S4	4	688.7150268554688	2	688.893503	1375.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.153	1	39.774	39.274	40.274	-0.37936								0	0	0	0.95273	1	14721	14721		4.897	1.6157	1		+		19991	12166	12676	12733	19194	19194					0.09959834371056786
LRHLLKIML	9	Unmodified	_LRHLLKIML_					0	0	0		ENST00000418770.5_1_2:160567350-160568460:-|nuORF	ENST00000418770.5_1_2:160567350-160568460:-|nuORF	ENST00000418770.5_1_2:160567350-160568460:-|nuORF	MSMS	HCT116MG_D190212_S1	1	568.8701782226562	2	568.870454	1135.72636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.844	1	10.844	10.344	11.344	0								0	0	0	0.77025	1	3360	3360		0	0	1				19992	7771	12677	12734	19195	19195					0.16392097935272432
LRHLMLIRHL	10	Unmodified	_LRHLMLIRHL_					0	0	0		ENST00000547912.1_1_12:56676553-56677641:-|nuORF	ENST00000547912.1_1_12:56676553-56677641:-|nuORF	ENST00000547912.1_1_12:56676553-56677641:-|nuORF	MSMS	HCT116MG_D190212_S1	1	651.4035034179688	2	651.402984	1300.79141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.607	1	53.607	53.107	54.107	0								0	0	0	0.94107	1	20534	20534		6.7232	0.51738	1				19993	8736	12678	12735	19196	19196					0.15305092461153436
LRHLRDLRA	9	Unmodified	_LRHLRDLRA_					0	0	0		ENST00000343666.5_1_9:140099699-140100026:-|nuORF	ENST00000343666.5_1_9:140099699-140100026:-|nuORF	ENST00000343666.5_1_9:140099699-140100026:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	575.351318359375	2	575.351806	1148.68906	0.51335	0.00029536	-0.81193	-0.00046715	-0.29858	-0.00017179	575.3510194708502	54.308	0.56044	54.308	54.077	54.637	0					15	10	2	0	0	0	0.74287	1	20835	20835		3.9444	0	1	19341000			19994	7247	12679	12736	19197	19197					0.12066142713888439
LRHVRRRHR	9	Unmodified	_LRHVRRRHR_					0	0	0		ENSG00000268350|ENST00000622447|FAM156A;ENSG00000179304|ENST00000416841|FAM156B	ENSG00000268350|ENST00000622447|FAM156A	ENSG00000268350|ENST00000622447|FAM156A	MSMS	HCT116MG_D190212_S1	1	429.26934814453125	3	429.269417	1284.78642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.447	1	39.447	38.947	39.947	0								0	0	0	0.77001	1	14798	14798		0.86438	0.35842	1				19995	5548	12680	12737	19198	19198					0.1554196943336592
LRILRFTKI	9	Unmodified	_LRILRFTKI_					0	0	0		HCN1|p.V257L|1|0.41|ENSG00000164588|chr5:45645265-45645265|C/G|missense_variant	HCN1|p.V257L|1|0.41|ENSG00000164588|chr5:45645265-45645265|C/G|missense_variant	HCN1|p.V257L|1|0.41|ENSG00000164588|chr5:45645265-45645265|C/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	387.2149963378906	3	387.260642	1158.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.011	1	17.011	16.511	17.511	0								0	0	0	0.76991	1	5763	5763		1.1933	0	1				19996	9207	12681	12738	19199	19199					0.18706842698679793
LRKCSVMFIAT	11	Unmodified	_LRKCSVMFIAT_					0	0	0		nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MULTI-MSMS	HCT116MG_D190212_S2	2	423.5672912597656	3	423.566638	1267.67808	0.30191	0.00012788	0.54414	0.00023048	0.84604	0.00035836	423.5668835109833	44.814	0.31148	44.729	44.535	44.846	-0.084797					9	5	2	0	0	0	0.74191	1	17048	17048		2.6312	0	1	28871000			19997	9576	12682	12739	19200	19200					0.054952362330823235
LRKEETQKRPV	11	Unmodified	_LRKEETQKRPV_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	HCT116MG_D190212_S1	1	692.4066162109375	2	692.406975	1382.7994	0.71693	0.00049641	-0.59889	-0.00041467	0.11804	8.1734E-05	692.4062740746456	52.012	2.7319	52.012	50.833	53.565	0					84	52	3	0	0	0	0.74191	1	19473	19473		2.9952	0.90923	1	58405000			19998	3749	12683	12740	19201	19201					0.1233089819156703
LRKEETQKRPV	11	Unmodified	_LRKEETQKRPV_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MSMS	HCT116MG_D190212_S2	2	692.4072265625	2	692.406975	1382.7994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.149	1	45.056	44.556	45.556	-0.092472								0	0	0	0.95196	1	17162	17162		5.2969	0.76802	1				19999	3749	12683	12740	19202	19202					0.1233089819156703
LRKERFERRQR	11	Unmodified	_LRKERFERRQR_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	HCT116MG_D190212_S1	1	525.6442260742188	3	525.309718	1572.90732	0.46733	0.00024549	-0.42776	-0.00022471	0.039565	2.0784E-05	525.3093117530548	54.103	0.56258	54.103	53.72	54.282	0					18	10	2	0	0	0	0.74191	1	20795	20795		0.36667	0.27183	1	65539000	+		20000	11224	12684	12741	19203	19203					0.1437870756551547
LRKERFERRQR	11	Unmodified	_LRKERFERRQR_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	HCT116MG_D190212_S1	1	787.9632568359375	2	787.460939	1572.90732	0.93611	0.00073715	-0.22927	-0.00018054	0.70684	0.00055661	787.4607592503082	54.887	1.4264	54.887	54.231	55.658	0					110	27	6	0	0	0	0.74191	1	21233	21233		0.30703	0.30703	1	175990000	+		20001	11224	12684	12741	19204	19204					0.1437870756551547
LRKERFERRQR	11	Unmodified	_LRKERFERRQR_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	HCT116MG_D190212_S2	2	787.4608154296875	2	787.460939	1572.90732	0.93566	0.0007368	-0.15841	-0.00012474	0.77726	0.00061206	787.4605470062413	55.491	0.82075	55.306	54.818	55.639	-0.18565					43	15	4	0	0	0	0.74191	1	21344	21344		0.30703	0.30703	1	50435000	+		20002	11224	12684	12741	19205	19205					0.1437870756551547
LRKGIVTKGQ	10	Unmodified	_LRKGIVTKGQ_					0	0	0			REV__COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant	REV__COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	550.7905883789062	2	550.35094	1098.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.746	1	40.676	40.176	41.176	-0.069626								0	0	0	0.94925	1	15375	15375		4.897	0.56777	1		+		20003	10231	12685	12742	19206	19206					0.14193088905290097
LRKKKKSVKKH	11	Unmodified	_LRKKKKSVKKH_					0	0	0		nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3	nc|ENSG00000177679|A6NNA2|SRRM3	nc|ENSG00000177679|A6NNA2|SRRM3	MSMS	HCT116MG_D190212_S4	4	690.4717407226562	2	690.469712	1378.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.983	1	58.7	58.2	59.2	-0.28305								0	0	0	0.96149	1	22184	22184		0.30703	0	1				20004	5468	12686	12743	19207	19207					0.2505665483847679
LRKKREKPRPE	11	Unmodified	_LRKKREKPRPE_					0	0	0		nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-4|DENND3;ENST00000518198.1_1_8:142138775-142151424:+|nuORF;DENND3|p.L310Sfs*31|1|0.4|ENSG00000105339|chr8:141155938-141155938|C/-|frameshift_variant	nc|ENSG00000105339|A2RUS2-2|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	MSMS	HCT116MG_D190212_S3	3	718.9439086914062	2	718.944059	1435.87356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.336	1	10.376	9.8763	10.876	0.039975								0	0	0	0.96149	1	3128	3128		0.30703	0	1				20005	2003	12687	12744	19208	19208					0.17306286073790034
LRKMQEEEA	9	Unmodified	_LRKMQEEEA_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;ENST00000525051.5_1_8:144874301-144875226:-|nuORF	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	HCT116MG_D190212_S4	4	378.5252990722656	3	378.525496	1132.55466	0.056459	2.1371E-05	-0.51068	-0.00019331	-0.45422	-0.00017193	378.52524704095543	21.298	0.20783	21.088	20.967	21.175	-0.20959					6	3	2	0	0	0	0.60612	1	7359	7359		7.1017	0.47135	1	5008400			20006	5615	12688	12745	19209	19209					-0.006317236136965221
LRKNISKIK	9	Unmodified	_LRKNISKIK_					0	0	0		nc|ENSG00000284862|Q9UFE4-2|CCDC39;nc|ENSG00000284862|Q9UFE4|CCDC39	nc|ENSG00000284862|Q9UFE4-2|CCDC39	nc|ENSG00000284862|Q9UFE4-2|CCDC39	MULTI-SECPEP	HCT116MG_D190212_S2	2	550.7332153320312	2	550.369133	1098.72371	0.39251	0.00021602	-0.21845	-0.00012023	0.17406	9.5798E-05	550.3689708755921	19.388	0.20867	19.018	18.888	19.096	-0.3695					5	3	2	0	0	0	0.17558	1	6712	6712		27.629	1.3607	1	7894700			20007	9669	12689	12746	19210	19210					0.1782996580195686
LRKWLWVP	8	Unmodified	_LRKWLWVP_					0	0	0			REV__MRPL28|p.E74Nfs*28|1|0.1|ENSG00000086504|chr16:370000-370000|G/-|frameshift_variant	REV__MRPL28|p.E74Nfs*28|1|0.1|ENSG00000086504|chr16:370000-370000|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	549.2793579101562	2	549.334562	1096.65457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.906	1	56.906	56.406	57.406	0								0	0	0	0.8837	1	21887	21887		2.8892	0.58649	1		+		20008	10934	12690	12747	19211	19211					0.11010926573067081
LRLKPHKA	8	Unmodified	_LRLKPHKA_					0	0	0		KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant;ENSG00000171303|ENST00000302909|KCNK3	KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant	KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	481.8167724609375	2	481.816536	961.618519	0.25345	0.00012211	-0.2507	-0.00012079	0.0027458	1.323E-06	481.81651030668763	60.89	1.6572	60.742	60.373	62.03	-0.14852					51	31	2	0	0	0	0.87635	2	23780	23780;24016		0.69038	0	1	22277000			20009	5188	12691	12748	19212;19213	19212					0.1361746939621753
LRLKTTKKK	9	Unmodified	_LRLKTTKKK_					0	0	0			REV__ENSG00000164600|ENST00000297142|NEUROD6	REV__ENSG00000164600|ENST00000297142|NEUROD6	MULTI-MSMS	HCT116MG_D190212_S2	2	558.3850708007812	2	558.384783	1114.75501	0.43587	0.00024338	-0.3371	-0.00018823	0.098775	5.5154E-05	558.3849504405352	60.248	0.97773	60.093	59.492	60.47	-0.15441					35	18	3	0	0	0	0.76909	1	23337	23337		0.45834	0	1	21204000	+		20010	13012	12692	12749	19214	19214					0.20222538836060266
LRLKTTKKK	9	Unmodified	_LRLKTTKKK_					0	0	0			REV__ENSG00000164600|ENST00000297142|NEUROD6	REV__ENSG00000164600|ENST00000297142|NEUROD6	MULTI-SECPEP	HCT116MG_D190212_S2	2	558.3850708007812	2	558.384783	1114.75501	0.43587	0.00024338	-0.3371	-0.00018823	0.098775	5.5154E-05	558.3849504405352	60.248	0.97773	60.093	59.492	60.47	-0.15441					35	18	3	0	0	0	0.27054	1	23337	23337		0.45834	0	1	21204000	+		20011	13012	12692	12749	19215	19215					0.20222538836060266
LRLLDPEYR	9	Unmodified	_LRLLDPEYR_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MSMS	HCT116MG_D190212_S2	2	587.8327026367188	2	587.83258	1173.65061	0.65259	0.00038361	-0.88914	-0.00052266	-0.23655	-0.00013905	587.8313822037959	33.858	0.31211	33.665	33.43	33.742	-0.19297					8	5	3	0	0	0	0.49616	1	12594	12594		17.113	1.8644	1	19369000	+		20012	10917	12693	12750	19216	19216					0.0707279228868174
LRLLDPEYR	9	Unmodified	_LRLLDPEYR_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	587.83258	1173.65061	0.65259	0.00038361	-0.88914	-0.00052266	-0.23655	-0.00013905	587.8313822037959	33.858	0.31211	33.665	33.43	33.742	-0.19297	-0.038254	-0.00062614	NaN	17.113	8	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19369000	+		20013	10917	12693	12750							0.0707279228868174
LRLLDPEYR	9	Unmodified	_LRLLDPEYR_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	587.83258	1173.65061	0.54202	0.00031861	-0.33832	-0.00019887	0.2037	0.00011974	588.3340163464466	34.035	0.15633	33.741	33.611	33.767	-0.29419	0.038254	2.1438E-05	NaN	17.113	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1817200	+		20014	10917	12693	12750							0.0707279228868174
LRLLKILLVLH	11	Unmodified	_LRLLKILLVLH_					0	0	0		ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	MSMS	HCT116MG_D190212_S1	1	444.316650390625	3	444.314747	1329.92241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.23	1	51.23	50.73	51.73	0								0	0	0	0.96208	1	19567	19567		0	0	1				20015	7233	12694	12751	19217	19217					0.27064806380826667
LRLLKILLVLH	11	Unmodified	_LRLLKILLVLH_					0	0	0		ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	MSMS	HCT116MG_D190212_S1	1	444.316650390625	3	444.314747	1329.92241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.852	1	51.852	51.352	52.352	0								0	0	0	0.96208	1	19819	19819		0	0	1				20016	7233	12694	12751	19218	19218					0.27064806380826667
LRLLKILLVLH	11	Unmodified	_LRLLKILLVLH_					0	0	0		ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	MSMS	HCT116MG_D190212_S2	2	665.9694213867188	2	665.968483	1329.92241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.211	1	50.039	49.539	50.539	-0.1719								0	0	0	0.96208	1	19239	19239		0	0	1				20017	7233	12694	12751	19219	19219					0.27064806380826667
LRLLKILLVLH	11	Unmodified	_LRLLKILLVLH_					0	0	0		ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	MSMS	HCT116MG_D190212_S2	2	444.3170166015625	3	444.314747	1329.92241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.64	1	50.468	49.968	50.968	-0.1719								0	0	0	0.96208	1	19411	19411		0	0	1				20018	7233	12694	12751	19220	19220					0.27064806380826667
LRLLKILLVLH	11	Unmodified	_LRLLKILLVLH_					0	0	0		ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	MSMS	HCT116MG_D190212_S2	2	444.31671142578125	3	444.314747	1329.92241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.262	1	51.083	50.583	51.583	-0.17868								0	0	0	0.96208	1	19664	19664		0	0	1				20019	7233	12694	12751	19221	19221					0.27064806380826667
LRLLKILLVLH	11	Unmodified	_LRLLKILLVLH_					0	0	0		ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	ENST00000342756.9_1_4:57357643-57361536:+|nuORF	MSMS	HCT116MG_D190212_S2	2	444.3165588378906	3	444.314747	1329.92241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.876	1	51.692	51.192	52.192	-0.18369								0	0	0	0.96208	1	19915	19915		0	0	1				20020	7233	12694	12751	19222	19222					0.27064806380826667
LRLLLDYRPKV	11	Unmodified	_LRLLLDYRPKV_					0	0	0		ENST00000313771.9_1_10:90751381-90762834:+|nuORF;ENST00000477270.5_1_10:90750964-90762834:+|nuORF	ENST00000313771.9_1_10:90751381-90762834:+|nuORF	ENST00000313771.9_1_10:90751381-90762834:+|nuORF	MSMS	HCT116MG_D190212_S3	3	462.6274108886719	3	462.625761	1384.85546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.889	1	11.944	11.444	12.444	0.055045								0	0	0	0.96194	1	3671	3671		0.073264	0.073264	1				20021	7075	12695	12752	19223	19223					0.17842151099057446
LRLQIIKNK	9	Unmodified	_LRLQIIKNK_					0	0	0			REV__CNKSR3|p.C160R|1|0.19|ENSG00000153721|chr6:154441321-154441321|A/G|missense_variant	REV__CNKSR3|p.C160R|1|0.19|ENSG00000153721|chr6:154441321-154441321|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	563.3770141601562	2	563.376958	1124.73936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.881	1	60.733	60.233	61.233	-0.14852								0	0	0	0.7701	1	23572	23572		0.52476	0	1		+		20022	10213	12696	12753	19224	19224					0.18198252319007224
LRLRDWIRRKL	11	Unmodified	_LRLRDWIRRKL_					0	0	0		ENST00000589493.1_1_17:40968013-40970272:-|nuORF	ENST00000589493.1_1_17:40968013-40970272:-|nuORF	ENST00000589493.1_1_17:40968013-40970272:-|nuORF	MSMS	HCT116MG_D190212_S1	1	762.9834594726562	2	762.983518	1523.95248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.646	1	31.646	31.146	32.146	0								0	0	0	0.96208	1	11651	11651		0	0	1				20023	9023	12697	12754	19225	19225					0.21146558098712376
LRLRVVRRRR	10	Unmodified	_LRLRVVRRRR_					0	0	0		ENST00000258648.6_1_13:48664543-48669210:-|nuORF	ENST00000258648.6_1_13:48664543-48669210:-|nuORF	ENST00000258648.6_1_13:48664543-48669210:-|nuORF	MSMS	HCT116MG_D190212_S3	3	690.4432983398438	2	690.46837	1378.92219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.542	1	58.273	57.773	58.773	-0.26932								0	0	0	0.96937	1	22273	22273		0.40072	0	1				20024	6832	12698	12755	19226	19226					0.24788244224191658
LRNKSLDLI	9	Unmodified	_LRNKSLDLI_					0	0	0			REV__LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant	REV__LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	357.8883361816406	3	357.888874	1070.64479	-0.34205	-0.00012242	-0.65081	-0.00023292	-0.99286	-0.00035533	357.8885948826041	37.464	0.20304	37.361	37.232	37.435	-0.10318					5	3	2	0	0	0	0.14171	1	14056	14056		53.404	11.448	1	49342000	+		20025	13486	12699	12756	19227	19227					0.11229693777045213
LRNKVIIEY	9	Unmodified	_LRNKVIIEY_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MSMS	HCT116MG_D190212_S2	2	574.3455810546875	2	574.345323	1146.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.28	1	35.137	34.637	35.637	-0.14245								0	0	0	0.016928	1	13154	13154		96.285	37.606	1				20026	2564	12700	12757	19228	19228					0.10862266811136578
LRPAAVLGVW	10	Unmodified	_LRPAAVLGVW_					0	0	0		ENST00000460939.5_1_11:62369949-62370383:-|nuORF	ENST00000460939.5_1_11:62369949-62370383:-|nuORF	ENST00000460939.5_1_11:62369949-62370383:-|nuORF	MSMS	HCT116MG_D190212_S3	3	361.2275085449219	3	361.222076	1080.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.467	1	58.197	57.697	58.697	-0.26932								0	0	0	0.96183	1	22242	22242		2.086	0.89267	1				20027	8048	12701	12758	19229	19229					0.1073031884784541
LRPESHRP	8	Unmodified	_LRPESHRP_					0	0	0		ENST00000473501.1_1_3:196755557-196755626:-|nuORF	ENST00000473501.1_1_3:196755557-196755626:-|nuORF	ENST00000473501.1_1_3:196755557-196755626:-|nuORF	MSMS	HCT116MG_D190212_S2	2	496.276611328125	2	496.275232	990.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.77	1	57.595	57.095	58.095	-0.17494								0	0	0	0.8837	1	22313	22313		12.532	0	1				20028	8178	12702	12759	19230	19230					0.04026527597409313
LRPHGGLL	8	Unmodified	_LRPHGGLL_					0	0	0			REV__JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant	REV__JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	862.5255126953125	1	862.525747	861.518471	0.84184	0.00072611	3.0802	0.0026567	3.922	0.0033828	862.5255351006639	60.342	1.4359	60.188	59.291	60.727	-0.15441					76	28	3	0	0	0	0.88026	1	23114	23114		0	0	1	20303000	+		20029	9840	12703	12760	19231	19231					0.08217232062440871
LRPRKLPRHE	10	Unmodified	_LRPRKLPRHE_					0	0	0			REV__MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	REV__MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	651.4010620117188	2	651.399287	1300.78402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.347	1	54.347	53.847	54.847	0								0	0	0	0.94339	1	20838	20838		6.2058	2.6093	1		+		20030	13809	12704	12761	19232	19232					0.14566076185064958
LRQILRHKRKL	11	Unmodified	_LRQILRHKRKL_					0	0	0		ENST00000537025.6_1_17:66040173-66040476:+|nuORF	ENST00000537025.6_1_17:66040173-66040476:+|nuORF	ENST00000537025.6_1_17:66040173-66040476:+|nuORF	MSMS	HCT116MG_D190212_S2	2	731.4153442382812	2	730.986061	1459.95757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.962	1	43.884	43.384	44.384	-0.078373								0	0	0	0.96208	1	16684	16684		0	0	1				20031	8669	12705	12762	19233	19233					0.24598861961339935
LRRAPGVS	8	Unmodified	_LRRAPGVS_					0	0	0			REV__ENST00000288014.6_1_14:24025414-24025621:+|nuORF	REV__ENST00000288014.6_1_14:24025414-24025621:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	855.5164184570312	1	855.515911	854.508634	0.60311	0.00051597	-0.55188	-0.00047215	0.051222	4.3821E-05	855.5153291718997	49.839	0.62556	49.524	49.185	49.81	-0.31525					17	11	2	0	0	0	0.81821	1	18747	18747		9.3474	0	1	13468000	+		20032	14738	12706	12763	19234	19234					0.0755604405703707
LRRFRPRPRRA	11	Unmodified	_LRRFRPRPRRA_					0	0	0		ENST00000263754.4_1_3:20081673-20082198:+|nuORF	ENST00000263754.4_1_3:20081673-20082198:+|nuORF	ENST00000263754.4_1_3:20081673-20082198:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	740.4645385742188	2	740.963452	1479.91235	0.70136	0.00051968	0.51137	0.00037891	1.2127	0.00089859	741.465611060945	60.905	2.2762	60.905	60.284	62.56	0					101	43	3	0	0	0	0.74191	1	23535	23535		0.30703	0.30703	1	33790000			20033	6884	12707	12764	19235	19235					0.19159056218791193
LRRGRPKRRRK	11	Unmodified	_LRRGRPKRRRK_					0	0	0		ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	ENSG00000170468|ENST00000304061|RIOX1	MSMS	HCT116MG_D190212_S4	4	739.9898071289062	2	739.990001	1477.96545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.255	1	24.976	24.476	25.476	-0.27958								0	0	0	0.96208	1	8941	8941		0	0	1				20034	5134	12708	12765	19236	19236					0.2455843400143749
LRRHVRRQR	9	Unmodified	_LRRHVRRQR_					0	0	0			REV__DTX4|p.R154H|1|0.25|ENSG00000110042|chr11:59181988-59181988|G/A|missense_variant	REV__DTX4|p.R154H|1|0.25|ENSG00000110042|chr11:59181988-59181988|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	426.2697448730469	3	426.269305	1275.78609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.365	1	58.096	57.596	58.596	-0.26932								0	0	0	0.76973	1	22201	22201		2.4985	2.0902	1		+		20035	10419	12709	12766	19237	19237					0.15922549713513945
LRRKQRRRERW	11	Unmodified	_LRRKQRRRERW_					0	0	0		RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant;RNF180|p.M409Sfs*7|1|0.11|ENSG00000164197|chr5:64217393-64217394|-/TCATACA|frameshift_variant;nc|ENSG00000164197|Q86T96-2|RNF180;ENSG00000164197|ENST00000389100|RNF180	RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant	RNF180|p.Q395Tfs*5|1|0.05|ENSG00000164197|chr5:64214507-64214508|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.0570678710938	3	547.332857	1638.97674	0.70063	0.00038348	-2.4317	-0.0013309	-1.731	-0.00094746	547.3319086568338	48.168	0.35447	48.035	47.841	48.196	-0.13281					9	6	2	0	0	0	0.36629	1	18455	18455		0.064406	0.064406	1	55499000			20036	4681	12710	12767	19238	19238					0.18281211304952194
LRRKWRCHWPR	11	Unmodified	_LRRKWRCHWPR_					0	0	0		ENST00000525864.5_1_11:13427176-13484721:-|nuORF	ENST00000525864.5_1_11:13427176-13484721:-|nuORF	ENST00000525864.5_1_11:13427176-13484721:-|nuORF	MSMS	HCT116MG_D190212_S3	3	797.4441528320312	2	797.444037	1592.87352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.738	1	26.589	26.089	27.089	-0.14924								0	0	0	0.96208	1	9606	9606		0	0	1				20037	8583	12711	12768	19239	19239					0.10080007592796392
LRRLKPTML	9	Unmodified	_LRRLKPTML_					0	0	0			REV__ENSG00000177627|ENST00000548364|C12orf54	REV__ENSG00000177627|ENST00000548364|C12orf54	MSMS	HCT116MG_D190212_S1	1	564.7643432617188	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.16	1	43.16	42.66	43.66	0								0	0	0	0.76902	1	16298	16298		4.3292	1.0479	1		+		20038	13578	12712	12769	19240	19240					0.14258623412865745
LRRPRRPRRW	10	Unmodified	_LRRPRRPRRW_					0	0	0		ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	483.2062072753906	3	483.635988	1447.88614	0.26451	0.00012793	-2.2491	-0.0010877	-1.9845	-0.0009598	483.6349916827839	56.892	0.52843	56.713	56.315	56.844	-0.17904					14	9	2	0	0	0	0.31203	1	21958	21958		0.15932	0.064481	1	4222400			20039	7450	12713	12770	19241	19241					0.18010787047319354
LRRQYDRV	8	Unmodified	_LRRQYDRV_					0	0	0		nc|ENSG00000163297|P58335-2|ANTXR2;ENSG00000163297|ENST00000403729|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	MSMS	HCT116MG_D190212_S1	1	369.6870422363281	3	369.212351	1104.61522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.131	1	39.131	38.631	39.631	0								0	0	0	0.8837	1	14671	14671		5.7319	1.203	1				20040	4589	12714	12771	19242	19242					0.06710174551540149
LRRRIIFSKKK	11	Unmodified	_LRRRIIFSKKK_					0	0	0			REV__ENST00000465645.1_1_1:28564388-28564475:+|nuORF	REV__ENST00000465645.1_1_1:28564388-28564475:+|nuORF	MSMS	HCT116MG_D190212_S1	1	482.3241882324219	3	482.324417	1443.95142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.49	1	61.49	60.99	61.99	0								0	0	0	0.96208	1	23727	23727		0	0	1		+		20041	15822	12715	12772	19243	19243					0.2472034372979124
LRRRIIFSKKK	11	Unmodified	_LRRRIIFSKKK_					0	0	0			REV__ENST00000465645.1_1_1:28564388-28564475:+|nuORF	REV__ENST00000465645.1_1_1:28564388-28564475:+|nuORF	MSMS	HCT116MG_D190212_S3	3	482.3840637207031	3	482.324417	1443.95142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.576	1	58.306	57.806	58.806	-0.26932								0	0	0	0.96208	1	22286	22286		0	0	1		+		20042	15822	12715	12772	19244	19244					0.2472034372979124
LRRRIIFSKKK	11	Unmodified	_LRRRIIFSKKK_					0	0	0			REV__ENST00000465645.1_1_1:28564388-28564475:+|nuORF	REV__ENST00000465645.1_1_1:28564388-28564475:+|nuORF	MSMS	HCT116MG_D190212_S3	3	482.32440185546875	3	482.324417	1443.95142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.159	1	58.895	58.395	59.395	-0.26405								0	0	0	0.96208	1	22522	22522		0	0	1		+		20043	15822	12715	12772	19245	19245					0.2472034372979124
LRRRIIFSKKK	11	Unmodified	_LRRRIIFSKKK_					0	0	0			REV__ENST00000465645.1_1_1:28564388-28564475:+|nuORF	REV__ENST00000465645.1_1_1:28564388-28564475:+|nuORF	MSMS	HCT116MG_D190212_S3	3	482.3242492675781	3	482.324417	1443.95142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.174	1	60.928	60.428	61.428	-0.24588								0	0	0	0.96208	1	23342	23342		0	0	1		+		20044	15822	12715	12772	19246	19246					0.2472034372979124
LRRRKAGP	8	Unmodified	_LRRRKAGP_					0	0	0			REV__nc|ENSG00000124535|Q96S55-2|WRNIP1	REV__nc|ENSG00000124535|Q96S55-2|WRNIP1	MSMS	HCT116MG_D190212_S3	3	477.7334899902344	2	477.30941	952.604266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.588	1	34.291	33.791	34.791	-0.29707								0	0	0	0.8837	1	12737	12737		2.8892	0	1		+		20045	11788	12716	12773	19247	19247					0.12606816967934265
LRRRKAGP	8	Unmodified	_LRRRKAGP_					0	0	0			REV__nc|ENSG00000124535|Q96S55-2|WRNIP1	REV__nc|ENSG00000124535|Q96S55-2|WRNIP1	MSMS	HCT116MG_D190212_S4	4	477.3101501464844	2	477.30941	952.604266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.117	1	40.739	40.239	41.239	-0.37732								0	0	0	0.8837	1	15109	15109		5.7604	1.0044	1		+		20046	11788	12716	12773	19248	19248					0.12606816967934265
LRRRKKKKAKR	11	Unmodified	_LRRRKKKKAKR_					0	0	0		nc|ENSG00000154144|Q3YBR2-2|TBRG1;ENST00000530731.5_1_11:124495676-124501136:+|nuORF	nc|ENSG00000154144|Q3YBR2-2|TBRG1	nc|ENSG00000154144|Q3YBR2-2|TBRG1	MSMS	HCT116MG_D190212_S4	4	490.010498046875	3	490.010944	1467.011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.706	1	13.544	13.044	14.044	-0.16233								0	0	0	0.96192	1	4309	4309		0.08335	0.08335	1				20047	9505	12717	12774	19249	19249					0.2961765946383821
LRRRKPKPL	9	Unmodified	_LRRRKPKPL_					0	0	0			REV__ENSG00000233232|ENST00000452313|NPIPB7	REV__ENSG00000233232|ENST00000452313|NPIPB7	MULTI-SECPEP	HCT116MG_D190212_S1	1	582.3772583007812	2	582.396016	1162.77748	0.45012	0.00026215	0.295	0.00017181	0.74512	0.00043396	582.395954733945	58.599	0.20365	58.599	58.514	58.717	0					9	3	3	0	0	0	0.2698	1	22590	22590		1.6526	0	1	37305000	+		20048	14022	12718	12775	19250	19250					0.2026018302437933
LRRRLCVWVWV	11	Unmodified	_LRRRLCVWVWV_					0	0	0			REV__ENST00000478137.1_1_7:1199695-1199887:-|nuORF	REV__ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	743.4356079101562	2	743.434815	1484.85508	0.90519	0.00067295	-0.012436	-9.2454E-06	0.89276	0.00066371	743.4346623093494	54.218	2.0424	54.218	53.307	55.349	0					104	39	4	0	0	0	0.74191	1	20639	20639		0.35063	0	1	320260000	+		20049	15929	12719	12776	19251	19251					0.1320445289820782
LRRRLCVWVWV	11	Unmodified	_LRRRLCVWVWV_					0	0	0			REV__ENST00000478137.1_1_7:1199695-1199887:-|nuORF	REV__ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	743.434815	1484.85508	0.95364	0.00070897	-0.57921	-0.00043061	0.37443	0.00027836	743.4341868710262	54.117	0.61694	53.928	53.584	54.201	-0.1894	-0.14536	-0.00074628	NaN	0.35063	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10128000	+		20050	15929	12719	12776							0.1320445289820782
LRRRRRRKWRE	11	Unmodified	_LRRRRRRKWRE_					0	0	0			REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	556.6805419921875	3	556.680368	1667.01927	0.44444	0.00024741	-0.79051	-0.00044006	-0.34608	-0.00019265	556.6801648841142	56.468	0.42023	56.286	56.104	56.524	-0.18261					10	7	2	0	0	0	0.74191	1	21823	21823		0	0	1	13678000	+		20051	14907	12720	12777	19252	19252					0.2124460643317434
LRRRRRRRRR	10	Unmodified	_LRRRRRRRRR_					0	0	0		ENST00000397992.5_1_16:72984846-73092758:-|nuORF;ENST00000373930.3_1_9:123476433-123476640:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF;REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	MSMS	HCT116MG_D190212_S2	2	512.98291015625	3	513.008819	1536.00463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.478	1	50.306	49.806	50.806	-0.1719								0	0	0	0.97116	1	19346	19346		0	0	1				20052	15197;7678	12721	12778	19253	19253					0.258065790756973
LRRRTRRMRRR	11	Unmodified	_LRRRTRRMRRR_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	538.33837890625	3	538.337836	1611.99168	0.36418	0.00019605	-0.31149	-0.00016769	0.052691	2.8366E-05	538.337624820257	60.996	1.6013	60.996	60.387	61.988	0					52	30	2	0	0	0	0.74191	3	23536	23536;23783;23830		0	0	1	24824000	+		20053	15535	12722	12779	19254;19255;19256	19254					0.21016379901288929
LRRRTRRMRRR	11	Unmodified	_LRRRTRRMRRR_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	538.3869018554688	3	538.337836	1611.99168	0.36418	0.00019605	-0.31149	-0.00016769	0.052691	2.8366E-05	538.337624820257	60.996	1.6013	60.996	60.387	61.988	0					52	30	2	0	0	0	0.36631	1	23425	23425		0	0	1	24824000	+		20054	15535	12722	12779	19257	19257					0.21016379901288929
LRRVKRLPKKL	11	Unmodified	_LRRVKRLPKKL_					0	0	0			REV__SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant	REV__SMC2|p.T751Pfs*9|3|0.3|ENSG00000136824|chr9:104123220-104123220|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	703.9911499023438	2	703.993355	1405.97216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.156	1	43.156	42.656	43.656	0								0	0	0	0.96208	1	16296	16296		0	0	1		+		20055	17531	12723	12780	19258	19258					0.2854093410946916
LRRVLDTA	8	Unmodified	_LRRVLDTA_					0	0	0		ENSG00000102901|ENST00000562787|CENPT;nc|ENSG00000102901|Q96BT3-3|CENPT;ENST00000564128.1_1_16:67866129-67867804:-|nuORF;ENST00000436104.6_1_16:67865250-67867798:-|nuORF;ENST00000569862.5_1_16:67865986-67867804:-|nuORF;nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF	ENSG00000102901|ENST00000562787|CENPT	ENSG00000102901|ENST00000562787|CENPT	MULTI-SECPEP	HCT116MG_D190212_S1	1	472.3116760253906	2	472.287808	942.561064	0.022745	1.0742E-05	-0.014326	-6.7661E-06	0.0084184	3.9759E-06	472.2876986091633	50.755	0.5685	50.755	50.523	51.091	0					23	10	4	0	0	0	0.33409	1	19468	19468		2.5775	0	1	453530000			20056	1857	12724	12781	19259	19259					0.08748582399971383
LRRVLRLARLL	11	Unmodified	_LRRVLRLARLL_					0	0	0			REV__PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant	REV__PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	689.976806640625	2	689.977705	1377.94086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.939	1	15.604	15.104	16.104	-0.33451								0	0	0	0.96149	1	5331	5331		0.30703	0	1		+		20057	10984	12725	12782	19260	19260					0.26700361075381807
LRRVVLRHF	9	Unmodified	_LRRVVLRHF_					0	0	0			REV__ENST00000265748.6_2_7:36429459-36435956:+|nuORF	REV__ENST00000265748.6_2_7:36429459-36435956:+|nuORF	MSMS	HCT116MG_D190212_S1	1	598.3799438476562	2	598.380366	1194.74618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.706	1	62.706	62.206	63.206	0								0	0	0	0.77008	1	24218	24218		0.6015	0.076735	1		+		20058	14675	12726	12783	19261	19261					0.15659609990257195
LRRWWPQQD	9	Unmodified	_LRRWWPQQD_					0	0	0			REV__sp|Q6SW03|US01_HCMVMProteinUS1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US1PE=4SV=1	REV__sp|Q6SW03|US01_HCMVMProteinUS1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US1PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	428.8912353515625	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.298	1	14.378	13.878	14.878	0.079683								0	0	0	0.77019	1	4592	4592		0.23584	0	1		+		20059	17568	12727	12784	19262	19262					0.021858460973135152
LRSHENSFYAN	11	Unmodified	_LRSHENSFYAN_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	HCT116MG_D190212_S1	1	446.546142578125	3	446.545947	1336.61601	-0.012082	-5.395E-06	0.097274	4.3438E-05	0.085193	3.8043E-05	446.88024806977717	18.688	0.20849	18.688	18.558	18.766	0					7	3	3	0	0	0	0.73661	1	6455	6455		8.2864	1.663	1	4746700	+		20060	10661	12728	12785	19263	19263					-0.038830755900335134
LRSLDPADAAP	11	Unmodified	_LRSLDPADAAP_					0	0	0		ENST00000563678.1_1_16:31716703-31716754:+|nuORF;ENST00000254109.9_1_16:31716703-31716763:+|nuORF	ENST00000563678.1_1_16:31716703-31716754:+|nuORF	ENST00000563678.1_1_16:31716703-31716754:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	563.2982788085938	2	563.29857	1124.58259	-0.35697	-0.00020108	0.82394	0.00046412	0.46697	0.00026304	563.2988414716095	16.107	0.19567	15.943	15.875	16.07	-0.16364					6	3	2	0	0	0	0.7093	1	5272	5272		18.373	3.1246	1	890650			20061	6809	12729	12786	19264	19264					0.02527922638023483
LRSLDPADAAP	11	Unmodified	_LRSLDPADAAP_					0	0	0		ENST00000563678.1_1_16:31716703-31716754:+|nuORF;ENST00000254109.9_1_16:31716703-31716763:+|nuORF	ENST00000563678.1_1_16:31716703-31716754:+|nuORF	ENST00000563678.1_1_16:31716703-31716754:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	563.29857	1124.58259	0.35494	0.00019994	-0.75385	-0.00042464	-0.39891	-0.0002247	563.2980476196435	15.918	0.15605	16.003	15.873	16.029	0.085423	0.030039	-0.00098165	NaN	18.373	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1474100			20062	6809	12729	12786							0.02527922638023483
LRSPRPRRHRQ	11	Unmodified	_LRSPRPRRHRQ_					0	0	0		WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	729.935791015625	2	729.934891	1457.85523	0.82812	0.00060447	0.11185	8.1641E-05	0.93996	0.00068611	729.934910668483	52.583	1.2919	52.583	51.861	53.153	0					40	24	2	0	0	0	0.74191	1	20131	20131		0	0	1	107680000			20063	18695	12730	12787	19265	19265					0.1446158894243581
LRSPRPRRHRQ	11	Unmodified	_LRSPRPRRHRQ_					0	0	0		WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	486.958984375	3	486.95902	1457.85523	0.31382	0.00015282	0.040545	1.9744E-05	0.35436	0.00017256	486.95907681486693	52.613	0.72082	52.613	52.073	52.794	0					43	13	4	0	0	0	0.74191	1	20150	20150		0.50596	0.50596	1	105900000			20064	18695	12730	12787	19266	19266					0.1446158894243581
LRSPRPRRHRQ	11	Unmodified	_LRSPRPRRHRQ_					0	0	0		WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	729.9354858398438	2	729.934891	1457.85523	0.89294	0.00065179	0.19967	0.00014575	1.0926	0.00079753	729.9348756505692	53.849	2.5051	53.849	53.153	55.658	0					165	48	5	0	0	0	0.74191	4	20364	20364;20593;20823;21058		0.26902	0.26902	1	1138600000			20065	18695	12730	12787	19267;19268;19269;19270	19267					0.1446158894243581
LRSPRPRRHRQ	11	Unmodified	_LRSPRPRRHRQ_					0	0	0		WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	486.95831298828125	3	486.95902	1457.85523	0.37925	0.00018468	-0.050564	-2.4622E-05	0.32868	0.00016006	486.9589707531252	53.889	2.0462	53.889	52.845	54.892	0					176	39	7	0	0	0	0.74191	4	20389	20389;20613;20786;20844		0.50596	0.50596	1	686890000			20066	18695	12730	12787	19271;19272;19273;19274	19271					0.1446158894243581
LRSPRPRRHRQ	11	Unmodified	_LRSPRPRRHRQ_					0	0	0		WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	730.4352416992188	2	729.934891	1457.85523	0.87304	0.00063727	-0.15047	-0.00010983	0.72258	0.00052743	729.9346513034387	53.387	1.0829	53.198	52.553	53.636	-0.18922					48	20	3	0	0	0	0.74191	2	20417	20417;20436		0	0	1	39264000			20067	18695	12730	12787	19275;19276	19275					0.1446158894243581
LRSPRPRRHRQ	11	Unmodified	_LRSPRPRRHRQ_					0	0	0		WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	729.935302734375	2	729.934891	1457.85523	1.0018	0.00073128	-0.10565	-7.7115E-05	0.8962	0.00065417	729.9346674720574	54.617	2.1548	54.428	53.532	55.687	-0.1894					134	41	5	0	0	0	0.74191	2	20887	20887;21118		0	0	1	381670000			20068	18695	12730	12787	19277;19278	19277					0.1446158894243581
LRSPRPRRHRQ	11	Unmodified	_LRSPRPRRHRQ_					0	0	0		WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	487.29302978515625	3	486.95902	1457.85523	0.20583	0.00010023	0.035815	1.744E-05	0.24165	0.00011767	486.9590325064231	54.599	1.7404	54.41	53.636	55.376	-0.1894					136	33	6	0	0	0	0.74191	1	21162	21162		0.50596	0.09769	1	300070000			20069	18695	12730	12787	19279	19279					0.1446158894243581
LRSPRPRRHRQ	11	Unmodified	_LRSPRPRRHRQ_					0	0	0		WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	729.934891	1457.85523	0.82812	0.00060447	0.11185	8.1641E-05	0.93996	0.00068611	729.934910668483	52.583	1.2919	52.583	51.861	53.153	0	0	0	NaN	0	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107680000			20070	18695	12730	12787							0.1446158894243581
LRSPRPRRHRQ	11	Unmodified	_LRSPRPRRHRQ_					0	0	0		WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	WIZ|p.P777Hfs*152|1|0.34|ENSG00000011451|chr19:15423131-15423131|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		3	486.95902	1457.85523	0.09276	4.517E-05	0.84577	0.00041186	0.93853	0.00045703	486.9594975277665	54.147	0.20898	53.847	53.716	53.925	-0.29946	-0.020735	0.0012706	NaN	0.50596	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1628200			20071	18695	12730	12787							0.1446158894243581
LRSRAQKRREA	11	Unmodified	_LRSRAQKRREA_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant;SPTBN5|p.A3297Gfs*48|1|0.56|ENSG00000137877|chr15:41853672-41853673|-/C|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	HCT116MG_D190212_S1	1	1370.810546875	1	1370.80874	1369.80146	0.75751	0.0010384	0.77843	0.0010671	1.5359	0.0021055	1370.8102977589126	52.745	0.30902	52.745	52.639	52.948	0					8	5	2	0	0	0	0.74191	1	20200	20200		1.1933	0	1	10795000			20072	3513	12731	12788	19280	19280					0.13135371720090916
LRTGPGLR	8	Unmodified	_LRTGPGLR_					0	0	0			REV__nc|ENSG00000131095|P14136-3|GFAP	REV__nc|ENSG00000131095|P14136-3|GFAP	MSMS	HCT116MG_D190212_S2	2	435.2715148925781	2	435.269419	868.524284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.349	1	31.1	30.6	31.6	-0.24883								0	0	0	0.8396	1	11561	11561		19.439	0	1		+		20073	11955	12732	12789	19281	19281					0.08476330574080748
LRTLKENRGII	11	Unmodified	_LRTLKENRGII_					0	0	0		tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	tr|U7SV20|U7SV20_FUSNU3-oxoacyl-[acyl-carrierprotein]reductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01097PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	656.9063720703125	2	656.906611	1311.79867	0.78276	0.0005142	-0.72829	-0.00047842	0.054464	3.5778E-05	656.9059369895556	55.427	0.20442	55.427	55.298	55.503	0					11	3	4	0	0	0	0.74191	1	21288	21288		0	0	1	210570000			20074	18485	12733	12790	19282	19282					0.15524103542543344
LRTPHWLSSL	10	Unmodified	_LRTPHWLSSL_					0	0	0			REV__MFGE8|p.A307Pfs*66|1|0.25|ENSG00000140545|chr15:88899763-88899763|C/-|frameshift_variant	REV__MFGE8|p.A307Pfs*66|1|0.25|ENSG00000140545|chr15:88899763-88899763|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	605.415771484375	2	605.340572	1208.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.046	1	41.743	41.243	42.243	-0.30257								0	0	0	0.84701	1	15651	15651		22.736	8.8302	1		+		20075	17023	12734	12791	19283	19283					0.07060498525629555
LRVMLRGVY	9	Unmodified	_LRVMLRGVY_					0	0	0			REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2	REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7528686523438	2	553.828786	1105.64302	0.62708	0.0003473	1.3592	0.00075276	1.9863	0.0011001	553.829283371533	46.954	1.5459	46.832	45.997	47.543	-0.12175					48	29	2	0	0	0	0.70732	1	17623	17623		4.756	0	1	28015000	+		20076	10593	12735	12792	19284	19284					0.09442361487435846
LRVWAPLA	8	Unmodified	_LRVWAPLA_					0	0	0		ENST00000463727.1_1_10:129868414-129869560:+|nuORF	ENST00000463727.1_1_10:129868414-129869560:+|nuORF	ENST00000463727.1_1_10:129868414-129869560:+|nuORF	MSMS	HCT116MG_D190212_S4	4	463.2843933105469	2	463.284537	924.554522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.847	1	54.529	54.029	55.029	-0.31849								0	0	0	0.8837	1	20520	20520		0.79363	0	1				20077	8076	12736	12793	19285	19285					0.08922689239250303
LRWRHKLLLP	10	Unmodified	_LRWRHKLLLP_					0	0	0		nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;DPAGT1|p.T234Hfs*116|1|0.35|ENSG00000172269|chr11:119098432-119098433|-/A|frameshift_variant;ENST00000533687.1_1_11:118971334-118971544:-|nuORF	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	MSMS	HCT116MG_D190212_S4	4	666.4256591796875	2	666.424774	1330.83499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.026	1	42.652	42.152	43.152	-0.37493								0	0	0	0.96911	1	15835	15835		0.45834	0.057624	1				20078	5244	12737	12794	19286	19286					0.18281025229930492
LRYKQRKVERK	11	Unmodified	_LRYKQRKVERK_					0	0	0			REV__ENSG00000169876|ENST00000306151|MUC17	REV__ENSG00000169876|ENST00000306151|MUC17	MSMS	HCT116MG_D190212_S4	4	752.4651489257812	2	752.465158	1502.91576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.999	1	47.63	47.13	48.13	-0.36907								0	0	0	0.96157	1	17762	17762		0.26902	0.26902	1		+		20079	13267	12738	12795	19287	19287					0.18442261482164213
LRYTLRRQ	8	Unmodified	_LRYTLRRQ_					0	0	0		ENST00000590513.2_1_17:40705339-40705789:-|nuORF	ENST00000590513.2_1_17:40705339-40705789:-|nuORF	ENST00000590513.2_1_17:40705339-40705789:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	553.3323364257812	2	553.333082	1104.65161	0.30335	0.00016785	-3.0556	-0.0016908	-2.7523	-0.0015229	553.8317602403316	51.015	0.41334	51.015	50.781	51.194	0					13	7	2	0	0	0	0.80542	1	19485	19485		10.824	1.4765	1	11711000			20080	9028	12739	12796	19288	19288					0.10347051448297861
LRYYERIK	8	Unmodified	_LRYYERIK_					0	0	0			REV__ENSG00000177692|ENST00000381947|DNAJC28	REV__ENSG00000177692|ENST00000381947|DNAJC28	MSMS	HCT116MG_D190212_S4	4	380.89031982421875	3	380.888986	1139.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.72659	1	0.46203	-0.037972	0.96203	-0.26456								0	0	0	0.8837	1	235	235		0.40072	0	1		+		20081	13582	12740	12797	19289	19289					0.08089113496885147
LRYYERIK	8	Unmodified	_LRYYERIK_					0	0	0			REV__ENSG00000177692|ENST00000381947|DNAJC28	REV__ENSG00000177692|ENST00000381947|DNAJC28	MSMS	HCT116MG_D190212_S4	4	380.8906555175781	3	380.888986	1139.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5037	1	5.2422	4.7422	5.7422	-0.26151								0	0	0	0.8837	1	1679	1679		0.40072	0	1		+		20082	13582	12740	12797	19290	19290					0.08089113496885147
LSAAKRRQ	8	Unmodified	_LSAAKRRQ_					0	0	0			REV__nc|ENSG00000151466|Q96NL6-3|SCLT1	REV__nc|ENSG00000151466|Q96NL6-3|SCLT1	MULTI-MSMS	HCT116MG_D190212_S1	1	466.25848388671875	2	465.2856	928.556647	0.024542	1.1419E-05	0.131	6.0954E-05	0.15554	7.2373E-05	465.2856082442169	50.24	0.77243	50.24	49.802	50.574	0					28	14	3	0	0	0	0.8506	1	19201	19201		5.2307	0	1	101160000	+		20083	12601	12741	12798	19291	19291					0.08951117977085232
LSAASTSLGP	10	Unmodified	_LSAASTSLGP_					0	0	0		CD33|p.P184S|1|0.32|ENSG00000105383|chr19:51225934-51225934|C/T|missense_variant	CD33|p.P184S|1|0.32|ENSG00000105383|chr19:51225934-51225934|C/T|missense_variant	CD33|p.P184S|1|0.32|ENSG00000105383|chr19:51225934-51225934|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	452.24285888671875	2	452.242732	902.470912	0.098521	4.4555E-05	-0.097298	-4.4002E-05	0.0012229	5.5304E-07	452.2428188128349	21.501	0.15855	21.519	21.43	21.588	0.018446					4	2	2	0	0	0	0.69918	1	7518	7518		20.454	2.3073	1	2244800			20084	374	12742	12799	19292	19292					0.015774882809296287
LSADQDFLLRR	11	Unmodified	_LSADQDFLLRR_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MSMS	HCT116MG_D190212_S2	2	667.3643798828125	2	667.364776	1332.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.33	1	33.137	32.637	33.637	-0.19297								0	0	0	0.9465	1	12363	12363		8.1555	0.54658	1		+		20085	12453	12743	12800	19293	19293					0.061949473748200035
LSAGVTGTTV	10	Unmodified	_LSAGVTGTTV_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	HCT116MG_D190212_S3	3	905.494384765625	1	905.493838	904.486562	0.58954	0.00053382	0.35253	0.00031921	0.94207	0.00085303	905.4942222068056	31.083	0.26098	30.822	30.656	30.917	-0.26071					6	4	2	0	0	0	0.17848	1	11360	11360		61.357	0	1	4256100			20086	6386	12744	12801	19294	19294					0.0304977479796662
LSAISKDPL	9	Unmodified	_LSAISKDPL_					0	0	0			REV__RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant	REV__RCOR1|p.R311Gfs*28|1|0.35|ENSG00000089902|chr14:102714491-102714491|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	472.26422119140625	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.995	1	35.867	35.367	36.367	-0.12799								0	0	0	0.55145	1	13446	13446		26.268	4.7312	1		+		20087	10978	12745	12802	19295	19295					0.06502938211713172
LSAKKRPV	8	Unmodified	_LSAKKRPV_					0	0	0			REV__ENSG00000173198|ENST00000373304|CYSLTR1	REV__ENSG00000173198|ENST00000373304|CYSLTR1	MULTI-MSMS	HCT116MG_D190212_S2	2	899.5849609375	1	898.583262	897.575986	1.0591	0.0009517	2.2141	0.0019896	3.2733	0.0029413	898.5807680490976	60.357	2.0609	60.202	59.291	61.352	-0.15441					123	40	4	0	0	0	0.86564	1	23534	23534		2.5775	1.7838	1	18408000	+		20088	13421	12746	12803	19296	19296					0.12310074267998061
LSAKTELVA	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LSAKTELVA_					1	0	0		FUT5|p.A209V|1|0.2|ENSG00000130383|chr19:5867100-5867100|G/A|missense_variant;ENSG00000156413|ENST00000318336|FUT6;ENSG00000171124|ENST00000303225|FUT3;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5	FUT5|p.A209V|1|0.2|ENSG00000130383|chr19:5867100-5867100|G/A|missense_variant	FUT5|p.A209V|1|0.2|ENSG00000130383|chr19:5867100-5867100|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	487.281494140625	2	487.281857	972.549162	-0.01947	-9.4875E-06	0.01266	6.1691E-06	-0.00681	-3.3184E-06	487.2816906062726	37.906	0.25736	37.813	37.651	37.908	-0.093006					12	4	4	0	0	0	0.090581	1	14235	14235		60.074	16.216	1	49763000			20089	3077	12747	12804	19297	19297					0.0617892086613665
LSAPPHHRSIP	11	Unmodified	_LSAPPHHRSIP_					0	0	0		ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	MSMS	HCT116MG_D190212_S3	3	606.3345947265625	2	606.335821	1210.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.937	1	41.634	41.134	42.134	-0.30257								0	0	0	0.95636	1	15607	15607		2.9952	2.5369	1				20090	6383	12748	12805	19298	19298					0.060187302400890985
LSAPSHARA	9	Unmodified	_LSAPSHARA_					0	0	0			REV__PARP4|p.P1329L|1|0.43|ENSG00000102699|chr13:24435155-24435155|G/A|missense_variant	REV__PARP4|p.P1329L|1|0.43|ENSG00000102699|chr13:24435155-24435155|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	909.4907836914062	1	909.49009	908.482814	0.73233	0.00066605	0.14478	0.00013168	0.87712	0.00079773	909.4901173711456	57.715	0.3625	57.715	57.464	57.826	0					17	6	3	0	0	0	0.59184	1	22167	22167		11.64	2.2929	1	48022000	+		20091	11159	12749	12806	19299	19299					0.024911498147503153
LSAVCHSYSVP	11	Unmodified	_LSAVCHSYSVP_					0	0	0			REV__ENST00000494399.5_1_1:45478943-45479284:+|nuORF	REV__ENST00000494399.5_1_1:45478943-45479284:+|nuORF	MSMS	HCT116MG_D190212_S4	4	581.779296875	2	581.781699	1161.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.268	1	43.894	43.394	44.394	-0.37373								0	0	0	0.95113	1	16303	16303		5.7319	0.43497	1		+		20092	16076	12750	12807	19300	19300					-0.025468221253504453
LSAVHRLSP	9	Unmodified	_LSAVHRLSP_					0	0	0			REV__ENST00000489895.5_1_3:52514938-52524786:+|nuORF	REV__ENST00000489895.5_1_3:52514938-52524786:+|nuORF	MSMS	HCT116MG_D190212_S4	4	490.28662109375	2	490.287808	978.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.517	1	27.196	26.696	27.696	-0.32157								0	0	0	0.76694	1	9854	9854		11.64	3.7301	1		+		20093	10516	12751	12808	19301	19301					0.07092582400002811
LSAVLKEAE	9	Unmodified	_LSAVLKEAE_					0	0	0			REV__ENSG00000146830|ENST00000678049|GIGYF1	REV__ENSG00000146830|ENST00000678049|GIGYF1	MSMS	HCT116MG_D190212_S4	4	480.2735900878906	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.155	1	43.781	43.281	44.281	-0.37373								0	0	0	0.76818	1	16257	16257		7.2892	1.0834	1		+		20094	12494	12752	12809	19302	19302					0.05258634349092972
LSCDMDCNC	9	Unmodified	_LSCDMDCNC_					0	0	0			REV__ENSG00000242120|ENST00000567252|MDFIC2	REV__ENSG00000242120|ENST00000567252|MDFIC2	MSMS	HCT116MG_D190212_S3	3	502.3034362792969	2	502.153031	1002.29151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.607	1	50.293	49.793	50.793	-0.31381								0	0	0	0.76967	1	19088	19088		2.0598	0	1		+		20095	14357	12753	12810	19303	19303					-0.20954546656867024
LSCPFHFPCP	10	Unmodified	_LSCPFHFPCP_					0	0	0		ENST00000583277.1_1_17:7467715-7468388:+|nuORF	ENST00000583277.1_1_17:7467715-7468388:+|nuORF	ENST00000583277.1_1_17:7467715-7468388:+|nuORF	MSMS	HCT116MG_D190212_S4	4	383.1748046875	3	383.173629	1146.49906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.08	1	56.78	56.28	57.28	-0.3004								0	0	0	0.96453	1	21415	21415		0.62683	0.17231	1				20096	8968	12754	12811	19304	19304					-0.06833228335017338
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	436.5327453613281	3	436.198548	1305.57381	-0.055863	-2.4367E-05	-0.1438	-6.2726E-05	-0.19966	-8.7093E-05	436.1984910202175	31.965	0.20873	31.965	31.857	32.066	0					5	3	2	0	0	0	0.45944	1	11793	11793		35.793	17.072	1	6388300			20097	6329	12755	12812	19305	19305					-0.0667505099841037
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	653.794189453125	2	653.794183	1305.57381	0.62654	0.00040963	1.573	0.0010284	2.1995	0.001438	653.7957556001774	31.935	0.20873	31.935	31.857	32.066	0					5	3	2	0	0	0	0.33345	1	11794	11794		60.943	45.695	1	4667000			20098	6329	12755	12812	19306	19306					-0.0667505099841037
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	654.2975463867188	2	653.794183	1305.57381	0.59028	0.00038592	0.52096	0.0003406	1.1112	0.00072652	653.7942574071965	32.199	0.25985	31.969	31.838	32.098	-0.23009					9	4	3	0	0	0	4.4711E-22	1	11914	11914		240.78	191.23	1	50546000			20099	6329	12755	12812	19307	19307					-0.0667505099841037
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	654.296142578125	2	653.794183	1305.57381	0.5818	0.00038038	-0.25763	-0.00016844	0.32418	0.00021194	653.7939455660294	32.375	0.26072	32.096	31.942	32.202	-0.27841					8	4	2	0	0	0	0.018354	1	11873	11873		132.57	99.122	1	6932300			20100	6329	12755	12812	19308	19308					-0.0667505099841037
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	436.19854736328125	3	436.198548	1305.57381	0.11045	4.818E-05	0.24273	0.00010588	0.35318	0.00015406	436.19854299396576	32.403	0.26072	32.124	31.942	32.202	-0.27841					12	4	3	0	0	0	0.29187	1	11885	11885		47.724	33.506	1	8464000			20101	6329	12755	12812	19309	19309					-0.0667505099841037
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	436.19830322265625	3	436.198548	1305.57381	0.17233	7.5169E-05	-0.26528	-0.00011571	-0.092952	-4.0545E-05	436.19829212048705	32.432	0.31142	32.053	31.949	32.261	-0.37923					7	5	2	0	0	0	0.45944	1	11829	11829		35.793	24.728	1	2788100			20102	6329	12755	12812	19310	19310					-0.0667505099841037
LSDDHGASWRY	11	Unmodified	_LSDDHGASWRY_					0	0	0		ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	ENST00000480384.1_1_6:31828203-31830565:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	653.794183	1305.57381	0.51754	0.00033837	0.044575	2.9143E-05	0.56212	0.00036751	653.7940680787916	32.48	0.1557	32.101	32.001	32.157	-0.37924	0.075465	0.00017247	NaN	240.78	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1664800			20103	6329	12755	12812							-0.0667505099841037
LSDDRSNILIY	11	Unmodified	_LSDDRSNILIY_					0	0	0		ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK;PIGK|p.Q292Rfs*8|1|0.25|ENSG00000142892|chr1:77154562-77154562|A/-|frameshift_variant	ENSG00000142892|ENST00000370812|PIGK	ENSG00000142892|ENST00000370812|PIGK	MULTI-MSMS	HCT116MG_D190212_S1	1	654.8434448242188	2	654.843342	1307.67213	0.82005	0.00053701	-0.32052	-0.00020989	0.49953	0.00032711	654.8435170049061	46.499	0.20612	46.499	46.337	46.543	0					6	3	2	0	0	0	0.25847	1	17643	17643		68.76	21.011	1	18179000			20104	3779	12756	12813	19311	19311					0.030601325267753055
LSDDRSNILIY	11	Unmodified	_LSDDRSNILIY_					0	0	0		ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK;PIGK|p.Q292Rfs*8|1|0.25|ENSG00000142892|chr1:77154562-77154562|A/-|frameshift_variant	ENSG00000142892|ENST00000370812|PIGK	ENSG00000142892|ENST00000370812|PIGK	MULTI-MSMS	HCT116MG_D190212_S2	2	654.8439331054688	2	654.843342	1307.67213	0.75359	0.00049348	-0.12951	-8.4807E-05	0.62408	0.00040868	654.8432257896758	46.508	0.41193	46.397	46.214	46.626	-0.11121					22	7	4	0	0	0	0.031641	1	17720	17720		125.18	77.587	1	119280000			20105	3779	12756	12813	19312	19312					0.030601325267753055
LSDELSLLLSY	11	Unmodified	_LSDELSLLLSY_					0	0	0			REV__ENST00000375571.5_1_20:31436579-31436699:+|nuORF	REV__ENST00000375571.5_1_20:31436579-31436699:+|nuORF	MSMS	HCT116MG_D190212_S2	2	627.0504150390625	2	626.837194	1251.65983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.588	1	43.515	43.015	44.015	-0.073376								0	0	0	0.94238	1	16531	16531		18.146	2.2992	1		+		20106	15217	12757	12814	19313	19313					0.04407096063755489
LSDETVVL	8	Unmodified	_LSDETVVL_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	HCT116MG_D190212_S2	2	875.472900390625	1	875.47204	874.464763	0.50747	0.00044427	-0.22372	-0.00019586	0.28375	0.00024842	875.4716543807748	49.759	0.30581	49.595	49.432	49.737	-0.16369					8	5	2	0	0	0	0.13911	1	19068	19068		86.121	11.725	1	29292000			20107	4215	12758	12815	19314	19314					0.022509700493856144
LSDGLSLGI	9	Unmodified	_LSDGLSLGI_					0	0	0			REV__ENST00000474947.1_1_7:100238307-100240397:-|nuORF	REV__ENST00000474947.1_1_7:100238307-100240397:-|nuORF	MSMS	HCT116MG_D190212_S1	1	437.7476806640625	2	437.74765	873.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.35	1	42.35	41.85	42.85	0								0	0	0	0.026974	1	15971	15971		85.357	9.5959	1		+		20108	15901	12759	12816	19315	19315					0.03894676286279264
LSDHHIYL	8	Unmodified	_LSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-SECPEP	HCT116MG_D190212_S2	2	499.833984375	2	499.258717	996.50288	0.48008	0.00023969	-0.78832	-0.00039358	-0.30824	-0.00015389	499.25824841805826	35.671	0.25705	35.529	35.335	35.592	-0.14245					6	4	2	0	0	0	0.20735	1	13298	13298		36.044	15.173	1	15224000			20109	4075	12760	12817	19316	19316					0.004489007547022084
LSDHHIYL	8	Unmodified	_LSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MATCH	HCT116MG_D190212_S1	1		2	499.258717	996.50288	0.49284	0.00024605	-5.7216	-0.0028565	-5.2287	-0.0026105	499.2565722629528	35.45	0.25811	35.45	35.371	35.63	0	-0.03958	-0.003893	NaN	36.044	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3976200			20110	4075	12760	12817							0.004489007547022084
LSDHLINQGY	10	Unmodified	_LSDHLINQGY_					0	0	0		nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9;ENST00000488738.5_1_20:61595350-61598131:+|nuORF	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	HCT116MG_D190212_S2	2	580.29150390625	2	580.290745	1158.56694	0.64285	0.00037304	-0.62985	-0.00036549	0.013004	7.5459E-06	580.2904756692449	36.314	0.20744	36.186	36.071	36.278	-0.12799					6	3	2	0	0	0	0.31047	1	13610	13610		49.554	25.534	1	14532000			20111	1762	12761	12818	19317	19317					-0.0060036387899344845
LSDIGLEY	8	Unmodified	_LSDIGLEY_					0	0	0		ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant;ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant;ADNP|p.A1012Sfs*11|1|0.25|ENSG00000101126|chr20:50891681-50891682|-/G|frameshift_variant;ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP	ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant	ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	909.4569091796875	1	909.45639	908.449113	0.96285	0.00087567	-0.28145	-0.00025596	0.6814	0.0006197	909.4563453873358	47.587	0.31049	47.454	47.273	47.584	-0.13281					11	5	3	0	0	0	0.070772	1	18161	18161		101.72	0	1	55616000			20112	64	12762	12819	19318	19318					-0.008773164676654233
LSDIGLEY	8	Unmodified	_LSDIGLEY_					0	0	0		ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant;ADNP|p.S763Ffs*3|1|0.04|ENSG00000101126|chr20:50892426-50892427|-/A|frameshift_variant;ADNP|p.A1012Sfs*11|1|0.25|ENSG00000101126|chr20:50891681-50891682|-/G|frameshift_variant;ADNP|p.Y1033Mfs*48|1|0.33|ENSG00000101126|chr20:50891618-50891618|G/-|frameshift_variant;ENSG00000101126|ENST00000621696|ADNP	ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant	ADNP|p.K659Sfs*17|1|0.38|ENSG00000101126|chr20:50892738-50892738|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	909.4572143554688	1	909.45639	908.449113	0.43543	0.000396	0.60565	0.00055081	1.0411	0.00094681	909.4568890783675	47.787	0.312	47.471	47.359	47.671	-0.31525					9	5	2	0	0	0	0.12463	1	17968	17968		89.427	0	1	5902600			20113	64	12762	12819	19319	19319					-0.008773164676654233
LSDIGSGIRY	10	Unmodified	_LSDIGSGIRY_					0	0	0		CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	540.787841796875	2	540.787838	1079.56112	0.099431	5.3771E-05	-0.16455	-8.8986E-05	-0.065119	-3.5216E-05	540.7879718845162	38.826	0.20705	38.826	38.644	38.851	0					5	3	2	0	0	0	0.027339	1	14552	14552		107.1	16.965	1	24828000			20114	462	12763	12820	19320	19320					0.024525376093379236
LSDIGSGIRY	10	Unmodified	_LSDIGSGIRY_					0	0	0		CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	540.7882080078125	2	540.787838	1079.56112	0.39136	0.00021165	0.10234	5.5345E-05	0.49371	0.00026699	540.7878437085691	38.793	0.46807	38.709	38.544	39.012	-0.084618					15	8	3	0	0	0	0.01091	1	14572	14572		143.91	18.871	1	126230000			20115	462	12763	12820	19321	19321					0.024525376093379236
LSDIGSGIRY	10	Unmodified	_LSDIGSGIRY_					0	0	0		CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	540.78759765625	2	540.787838	1079.56112	0.42262	0.00022855	-0.14674	-7.9353E-05	0.27589	0.0001492	540.7876433188078	39.043	0.4183	38.742	38.561	38.979	-0.30137					17	7	3	0	0	0	0.0064345	2	14469	14469;14564		163.69	19.778	1	59905000			20116	462	12763	12820	19322;19323	19322					0.024525376093379236
LSDIGSGIRY	10	Unmodified	_LSDIGSGIRY_					0	0	0		CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	540.7882080078125	2	540.787838	1079.56112	0.44828	0.00024242	-0.11848	-6.4074E-05	0.3298	0.00017835	540.7877688436066	39.127	0.33622	38.747	38.592	38.928	-0.38055					17	7	3	0	0	0	0.0015699	1	14372	14372		176.43	15.737	1	15774000			20117	462	12763	12820	19324	19324					0.024525376093379236
LSDIGSGIRYL	11	Unmodified	_LSDIGSGIRYL_					0	0	0		CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	597.3297119140625	2	597.32987	1192.64519	0.40368	0.00024113	0.32514	0.00019421	0.72882	0.00043535	597.3299234842813	48.589	0.20621	48.589	48.46	48.666	0					8	3	3	0	0	0	0.019131	1	18503	18503		132.13	49.605	1	32688000			20118	462	12764	12821	19325	19325					0.056570687062503566
LSDIGSGIRYL	11	Unmodified	_LSDIGSGIRYL_					0	0	0		CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	CHUK|p.M507Nfs*17|1|0.6|ENSG00000213341|chr10:100202137-100202138|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	597.33056640625	2	597.32987	1192.64519	0.78313	0.00046779	0.045596	2.7236E-05	0.82873	0.00049502	597.3296944755647	48.709	0.25397	48.565	48.439	48.693	-0.1437					7	4	2	0	0	0	0.036448	1	18625	18625		115.06	32.53	1	103260000			20119	462	12764	12821	19326	19326					0.056570687062503566
LSDIVIEKY	9	Unmodified	_LSDIVIEKY_					0	0	0		nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	nc|ENSG00000184465|A2RRH5-3|WDR27	nc|ENSG00000184465|A2RRH5-3|WDR27	MULTI-MSMS	HCT116MG_D190212_S1	1	540.3029174804688	2	540.30279	1078.59103	0.89056	0.00048117	-0.54583	-0.00029491	0.34473	0.00018626	540.3024519875825	41.627	0.25999	41.627	41.498	41.758	0					9	4	3	0	0	0	0.032914	1	15705	15705		83.429	6.604	1	9821800			20120	5772	12765	12822	19327	19327					0.05487476554662862
LSDIVIEKY	9	Unmodified	_LSDIVIEKY_					0	0	0		nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	nc|ENSG00000184465|A2RRH5-3|WDR27	nc|ENSG00000184465|A2RRH5-3|WDR27	MULTI-MSMS	HCT116MG_D190212_S3	3	540.302734375	2	540.30279	1078.59103	0.36688	0.00019823	0.14742	7.9652E-05	0.5143	0.00027788	540.3026897572163	41.866	0.22695	41.563	41.45	41.677	-0.30257					6	4	2	0	0	0	0.02327	1	15597	15597		93.166	6.834	1	8907000			20121	5772	12765	12822	19328	19328					0.05487476554662862
LSDIVIEKY	9	Unmodified	_LSDIVIEKY_					0	0	0		nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	nc|ENSG00000184465|A2RRH5-3|WDR27	nc|ENSG00000184465|A2RRH5-3|WDR27	MSMS	HCT116MG_D190212_S4	4	540.302734375	2	540.30279	1078.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.01	1	41.634	41.134	42.134	-0.37637								0	0	0	0.038892	1	15424	15424		74.2	6.3615	1				20122	5772	12765	12822	19329	19329					0.05487476554662862
LSDKGRDGKY	10	Unmodified	_LSDKGRDGKY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	HCT116MG_D190212_S2	2	569.79638671875	2	569.796195	1137.57784	0.29742	0.00016947	-0.20512	-0.00011687	0.0923	5.2592E-05	569.7961459431216	15.841	0.26102	15.507	15.376	15.637	-0.33451					7	4	2	0	0	0	0.70908	1	5313	5313		19.626	6.0111	1	10738000			20123	1317	12766	12823	19330	19330					0.014550384953054163
LSDKGRDGKY	10	Unmodified	_LSDKGRDGKY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	HCT116MG_D190212_S2	2	380.19976806640625	3	380.199889	1137.57784	-0.2625	-9.9802E-05	0.22744	8.6472E-05	-0.035062	-1.3331E-05	380.1998397299085	15.841	0.2088	15.507	15.376	15.585	-0.33451					5	3	2	0	0	0	0.87405	1	5317	5317		4.7159	1.9807	1	4650400			20124	1317	12766	12823	19331	19331					0.014550384953054163
LSDKKRSFT	9	Unmodified	_LSDKKRSFT_					0	0	0		nc|ENSG00000134762|Q14574-2|DSC3;ENSG00000134762|ENST00000360428|DSC3	nc|ENSG00000134762|Q14574-2|DSC3	nc|ENSG00000134762|Q14574-2|DSC3	MSMS	HCT116MG_D190212_S4	4	541.3043823242188	2	541.303655	1080.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.737	1	44.364	43.864	44.864	-0.37326								0	0	0	0.76913	1	16489	16489		3.9444	0	1				20125	3304	12767	12824	19332	19332					0.055685303633026706
LSDKNIEQY	9	Unmodified	_LSDKNIEQY_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	HCT116MG_D190212_S2	2	555.2771606445312	2	555.277303	1108.54005	0.016506	9.1653E-06	-0.2928	-0.00016258	-0.27629	-0.00015342	555.2770798508076	30.287	0.35975	30.002	29.873	30.233	-0.28453					10	6	2	0	0	0	0.0201	1	11150	11150		96.367	46.812	1	83547000			20126	2749	12768	12825	19333	19333					-0.009874724901919762
LSDKNIEQY	9	Unmodified	_LSDKNIEQY_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MSMS	HCT116MG_D190212_S3	3	555.27734375	2	555.277303	1108.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.429	1	30.179	29.679	30.679	-0.24946								0	0	0	0.00042363	1	11088	11088		129.77	44.131	1				20127	2749	12768	12825	19334	19334					-0.009874724901919762
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	498.2747802734375	2	498.274032	994.533512	0.11315	5.638E-05	-0.29769	-0.00014833	-0.18454	-9.1953E-05	498.2740157820715	40.377	0.25893	40.377	40.228	40.487	0					7	4	2	0	0	0	0.019537	1	15197	15197		96.936	30.479	1	8256900			20128	1898	12769	12826	19335	19335					0.03602634349101663
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	498.27386474609375	2	498.274032	994.533512	0.54238	0.00027026	-0.30358	-0.00015127	0.23881	0.00011899	498.27388766065104	40.408	0.25885	40.339	40.209	40.468	-0.069626					11	4	3	0	0	0	0.0039465	1	15241	15241		151.48	37.293	1	74351000			20129	1898	12769	12826	19336	19336					0.03602634349101663
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2743225097656	2	498.274032	994.533512	0.47068	0.00023453	-0.017609	-8.7743E-06	0.45307	0.00022575	498.2739788483705	40.639	0.26036	40.338	40.163	40.423	-0.30161					11	4	3	0	0	0	0.0047539	1	15091	15091		139.78	54.14	1	14022000			20130	1898	12769	12826	19337	19337					0.03602634349101663
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	498.2742004394531	2	498.274032	994.533512	0.48676	0.00024254	0.10441	5.2027E-05	0.59117	0.00029457	498.27390512146553	40.76	0.23582	40.381	40.182	40.418	-0.37828					7	4	2	0	0	0	0.022505	1	14963	14963		93.938	22.23	1	4047800			20131	1898	12769	12826	19338	19338					0.03602634349101663
LSDLGRLSY	9	Unmodified	_LSDLGRLSY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant;KAT6B|p.K962Sfs*2|1|0.13|ENSG00000156650|chr10:75021146-75021146|A/-|frameshift_variant;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant;KAT6B|p.L1460*|1|0.36|ENSG00000156650|chr10:75029198-75029198|T/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF	ENSG00000083168|ENST00000265713|KAT6A;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	ENSG00000083168|ENST00000265713|KAT6A	MSMS	HCT116MG_D190212_S4	4	512.2769775390625	2	512.277106	1022.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.192	1	40.815	40.315	41.315	-0.37732								0	0	0	0.32081	1	15140	15140		38.615	2.4877	1				20132	1428;4293	12770	12827	19339	19339					0.0292915258062294
LSDLKHMRY	9	Unmodified	_LSDLKHMRY_					0	0	0		HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;HAUS6|p.N492Mfs*50|1|0.4|ENSG00000147874|chr9:19063162-19063162|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6	HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant	HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	388.2060852050781	3	388.206098	1161.59646	0.010929	4.2427E-06	0.1485	5.7648E-05	0.15943	6.1891E-05	388.2060871887885	29.051	0.20544	28.735	28.657	28.863	-0.31613					6	3	2	0	0	0	0.068828	1	10656	10656		65.474	40.517	1	30679000			20133	4003	12771	12828	19340	19340					0.022128768654965825
LSDLKHMRY	9	Unmodified	_LSDLKHMRY_					0	0	0		HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant;HAUS6|p.N492Mfs*50|1|0.4|ENSG00000147874|chr9:19063162-19063162|T/-|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;ENSG00000147874|ENST00000380502|HAUS6	HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant	HAUS6|p.S530Vfs*12|1|0.3|ENSG00000147874|chr9:19063049-19063049|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		3	388.206098	1161.59646	0.15574	6.0461E-05	0.10374	4.0272E-05	0.25948	0.00010073	388.20622209621274	28.668	0.15821	28.668	28.588	28.746	0	-0.033641	-1.6266E-05	NaN	65.474	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3657800			20134	4003	12771	12828							0.022128768654965825
LSDPGSGLY	9	Unmodified	_LSDPGSGLY_					0	0	0		ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	MULTI-MSMS	HCT116MG_D190212_S3	3	908.4358520507812	1	908.435989	907.428712	0.57487	0.00052223	0.033625	3.0546E-05	0.6085	0.00055278	908.4359426042681	38.836	0.31218	38.534	38.352	38.664	-0.30137					11	5	3	0	0	0	0.0054498	1	14405	14405		133.7	68.467	1	8310600			20135	5655	12772	12829	19341	19341					-0.028704871274612742
LSDPGSGLY	9	Unmodified	_LSDPGSGLY_					0	0	0		ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	MULTI-MSMS	HCT116MG_D190212_S4	4	908.436767578125	1	908.435989	907.428712	0.66073	0.00060023	0.47248	0.00042922	1.1332	0.0010295	908.4365162303263	38.929	0.30144	38.548	38.388	38.689	-0.38163					9	5	2	0	0	0	0.010304	1	14287	14287		112.59	51.236	1	3038200			20136	5655	12772	12829	19342	19342					-0.028704871274612742
LSDPPPSIPPP	11	Unmodified	_LSDPPPSIPPP_					0	0	0			REV__ENSG00000089094|ENST00000377071|KDM2B	REV__ENSG00000089094|ENST00000377071|KDM2B	MULTI-MSMS	HCT116MG_D190212_S2	2	1116.5946044921875	1	1116.59355	1115.58628	0.64532	0.00072056	0.41982	0.00046877	1.0651	0.0011893	1116.5936959528808	56.264	0.15541	56.082	56.001	56.156	-0.18261					6	2	3	0	0	0	0.59379	1	21736	21736		36.127	0	1	16213000	+		20137	10967	12773	12830	19343	19343					0.033105924118899566
LSDPSGPKSY	10	Unmodified	_LSDPSGPKSY_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;RPS6KC1|p.F1056Lfs*9|1|0.05|ENSG00000136643|chr1:213272596-213272596|T/-|frameshift_variant;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	MSMS	HCT116MG_D190212_S1	1	525.7591552734375	2	525.758746	1049.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.394	1	24.394	23.894	24.894	0								0	0	0	0.055331	1	8730	8730		92.201	48.343	1				20138	3427	12774	12831	19344	19344					-0.01983144035943951
LSDPSGPKSY	10	Unmodified	_LSDPSGPKSY_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;RPS6KC1|p.F1056Lfs*9|1|0.05|ENSG00000136643|chr1:213272596-213272596|T/-|frameshift_variant;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	HCT116MG_D190212_S2	2	525.7588500976562	2	525.758746	1049.50294	0.44108	0.0002319	-0.17724	-9.3186E-05	0.26384	0.00013872	525.7586662473292	24.836	0.67649	24.461	24.14	24.816	-0.37521					23	12	3	0	0	0	0.016452	1	8907	8907		128.57	62.116	1	51607000			20139	3427	12774	12831	19345	19345					-0.01983144035943951
LSDPSGPKSY	10	Unmodified	_LSDPSGPKSY_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;RPS6KC1|p.F1056Lfs*9|1|0.05|ENSG00000136643|chr1:213272596-213272596|T/-|frameshift_variant;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	HCT116MG_D190212_S3	3	525.7586669921875	2	525.758746	1049.50294	0.35668	0.00018753	-0.60259	-0.00031682	-0.24592	-0.00012929	525.7586846832919	24.561	0.52024	24.477	24.133	24.653	-0.083694					26	9	4	0	0	0	0.022931	1	8711	8711		115.06	51.099	1	12027000			20140	3427	12774	12831	19346	19346					-0.01983144035943951
LSDPSGPKSY	10	Unmodified	_LSDPSGPKSY_					0	0	0		nc|ENSG00000136643|Q96S38-2|RPS6KC1;RPS6KC1|p.F1056Lfs*9|1|0.05|ENSG00000136643|chr1:213272596-213272596|T/-|frameshift_variant;ENSG00000136643|ENST00000366960|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	HCT116MG_D190212_S4	4	525.7587280273438	2	525.758746	1049.50294	0.5699	0.00029963	-0.37976	-0.00019966	0.19015	9.9971E-05	525.7584994131356	24.792	0.36337	24.523	24.289	24.653	-0.26881					12	6	3	0	0	0	0.6277	1	8758	8758		26.268	12.362	1	4122100			20141	3427	12774	12831	19347	19347					-0.01983144035943951
LSDSGSSDPPV	11	Unmodified	_LSDSGSSDPPV_					0	0	0			REV__ENSG00000147596|ENST00000276594|PRDM14	REV__ENSG00000147596|ENST00000276594|PRDM14	MSMS	HCT116MG_D190212_S2	2	530.9027709960938	2	530.743293	1059.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.891	1	50.712	50.212	51.212	-0.17868								0	0	0	0.92235	1	19513	19513		17.113	2.2746	1		+		20142	12519	12775	12832	19348	19348					-0.05532342140850233
LSDSQMKSY	9	Unmodified	_LSDSQMKSY_					0	0	0		GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant;GTF3C1|p.V2028Sfs*25|1|0.14|ENSG00000077235|chr16:27462329-27462329|C/-|frameshift_variant;nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.744873046875	2	529.744782	1057.47501	0.34612	0.00018336	0.21767	0.00011531	0.56379	0.00029867	529.7448419001801	26.532	0.25956	26.17	26.024	26.284	-0.36164					9	4	3	0	0	0	0.14376	1	9628	9628		49.527	20.446	1	11631000			20143	1351	12776	12833	19349	19349					-0.05142790287686694
LSDTKYLEMIY	11	Unmodified	_LSDTKYLEMIY_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S1	1	688.3447875976562	2	688.344329	1374.6741	0.78166	0.00053805	-0.25375	-0.00017467	0.5279	0.00036338	688.3441896059451	52.459	0.25595	52.459	52.331	52.587	0					9	4	3	0	0	0	0.068951	1	20091	20091		94.909	65.068	1	38374000			20144	6381	12777	12834	19350	19350					0.0017542522036819719
LSDTKYLEMIY	11	Unmodified	_LSDTKYLEMIY_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S2	2	688.3447265625	2	688.344329	1374.6741	0.53394	0.00036754	-0.072879	-5.0166E-05	0.46107	0.00031737	688.344272991602	52.788	0.36071	52.6	52.398	52.759	-0.18805					14	6	3	0	0	0	0.031511	1	20283	20283		104.48	74.644	1	70012000			20145	6381	12777	12834	19351	19351					0.0017542522036819719
LSDVFPGVQY	10	Unmodified	_LSDVFPGVQY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	562.7852172851562	2	562.784764	1123.55498	0.49461	0.00027836	-0.050972	-2.8686E-05	0.44363	0.00024967	562.7846415970869	53.025	0.25608	53.025	52.897	53.153	0					7	4	2	0	0	0	0.091457	1	20310	20310		75.761	48.132	1	15762000			20146	741	12778	12835	19352	19352					-0.0018598062217733968
LSDVFPGVQY	10	Unmodified	_LSDVFPGVQY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	562.784912109375	2	562.784764	1123.55498	0.28596	0.00016093	-0.11802	-6.642E-05	0.16794	9.4513E-05	562.7846557395843	53.336	0.3087	53.147	52.966	53.274	-0.18922					11	5	3	0	0	0	0.076419	1	20516	20516		78.728	48.092	1	35068000			20147	741	12778	12835	19353	19353					-0.0018598062217733968
LSDVFPGVQY	10	Unmodified	_LSDVFPGVQY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1124.5626220703125	1	1124.56225	1123.55498	0.42357	0.00047633	-0.51489	-0.00057902	-0.091314	-0.00010269	1124.5618848496117	53.336	0.3087	53.147	52.966	53.274	-0.18922					10	5	3	0	0	0	0.029414	1	20525	20525		103.35	61.514	1	17376000			20148	741	12778	12835	19354	19354					-0.0018598062217733968
LSDVFPGVQY	10	Unmodified	_LSDVFPGVQY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	563.2587890625	2	562.784764	1123.55498	0.51587	0.00029032	-0.69203	-0.00038946	-0.17617	-9.9143E-05	563.2858375582447	53.521	0.20901	53.218	53.087	53.296	-0.30305					5	3	2	0	0	0	0.25173	1	20286	20286		34.402	29.105	1	1381900			20149	741	12778	12835	19355	19355					-0.0018598062217733968
LSEALVSQV	9	Unmodified	_LSEALVSQV_					0	0	0		nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1;nc|ENSG00000067221|Q9UBI4-5|STOML1;STOML1|p.A372Pfs*3|1|0.41|ENSG00000067221|chr15:73984020-73984020|C/-|frameshift_variant;nc|ENSG00000067221|Q9UBI4-3|STOML1;ENSG00000067221|ENST00000541638|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	MSMS	HCT116MG_D190212_S2	2	473.2659606933594	2	473.266207	944.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.767	1	49.604	49.104	50.104	-0.16369								0	0	0	0.05792	1	19057	19057		68.081	3.8444	1				20150	9377	12779	12836	19356	19356					0.04338347832049294
LSEARLSCNP	10	Unmodified	_LSEARLSCNP_					0	0	0			REV__ENSG00000114650|ENST00000265565|SCAP	REV__ENSG00000114650|ENST00000265565|SCAP	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.7977294921875	2	545.271498	1088.52844	0.5442	0.00029673	0.41926	0.00022861	0.96346	0.00052535	545.2719860986435	35.083	0.31062	34.924	34.657	34.968	-0.15834					7	5	2	0	0	0	0.29442	1	13006	13006		6.2058	1.8765	1	5333900	+		20151	11513	12780	12837	19357	19357					-0.012279927851750472
LSEDDFDMFY	10	Unmodified	_LSEDDFDMFY_					0	0	0		SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant;ENSG00000185313|ENST00000449082|SCN10A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant;nc|ENSG00000183873|Q14524-3|SCN5A	SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	641.3419189453125	2	641.252637	1280.49072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.608	1	39.531	39.031	40.031	-0.077835								0	0	0	0.90023	1	14913	14913		15.847	2.8047	1				20152	5820;5747	12781	12838	19358	19358					-0.13830548561304568
LSEDTLTI	8	Unmodified	_LSEDTLTI_					0	0	0		ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	MULTI-MSMS	HCT116MG_D190212_S3	3	891.466796875	1	891.466955	890.459678	0.89557	0.00079837	-0.24124	-0.00021506	0.65432	0.00058331	891.4666980899437	51.772	0.26157	51.463	51.28	51.541	-0.30927					8	4	2	0	0	0	0.19622	1	19547	19547		74.396	0	1	6571200			20153	1681	12782	12839	19359	19359					0.010066661867654147
LSEDTLTI	8	Unmodified	_LSEDTLTI_					0	0	0		ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	MULTI-MATCH	HCT116MG_D190212_S2	2		1	891.466955	890.459678	0.95421	0.00085065	-0.20551	-0.0001832	0.7487	0.00066744	891.4667659985457	51.58	0.30864	51.396	51.218	51.527	-0.18369	-0.033372	1.222E-05	NaN	74.396	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37300000			20154	1681	12782	12839							0.010066661867654147
LSEERVWEY	9	Unmodified	_LSEERVWEY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	HCT116MG_D190212_S2	2	605.7906494140625	2	605.790578	1209.5666	0.33712	0.00020422	0.17441	0.00010566	0.51153	0.00030988	605.7904525722062	43.093	0.25713	43.019	42.891	43.149	-0.073376					9	4	3	0	0	0	0.14376	1	16359	16359		49.527	16.742	1	32736000			20155	1919	12783	12840	19360	19360					-0.029797835988347288
LSEERVWEY	9	Unmodified	_LSEERVWEY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MATCH	HCT116MG_D190212_S3	3		2	605.790578	1209.5666	0.59279	0.00035911	-0.099524	-6.0291E-05	0.49326	0.00029881	606.2917539084933	43.447	0.20792	43.142	43.032	43.24	-0.3056	0.061266	-0.00030217	NaN	49.527	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2386400			20156	1919	12783	12840							-0.029797835988347288
LSEEYCAC	8	Unmodified	_LSEEYCAC_					0	0	0			REV__NCOR2|p.R1501C|1|0.41|ENSG00000196498|chr12:124344810-124344810|G/A|missense_variant	REV__NCOR2|p.R1501C|1|0.41|ENSG00000196498|chr12:124344810-124344810|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	459.17236328125	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.302	1	30.932	30.432	31.432	-0.37026								0	0	0	0.8837	1	11355	11355		5.2307	0.47466	1		+		20157	17342	12784	12841	19361	19361					-0.1308575503933298
LSEGVTISY	9	Unmodified	_LSEGVTISY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1;ITGB1|p.G387D|1|0.24|ENSG00000150093|chr10:32920354-32920354|C/T|missense_variant	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S1	1	968.493408203125	1	968.493504	967.486227	0.50228	0.00048646	0.21554	0.00020875	0.71782	0.00069521	968.4936699055911	42.564	0.25562	42.564	42.435	42.69	0					10	4	3	0	0	0	0.031005	1	16063	16063		85.357	0.084716	1	51969000			20158	4080	12785	12842	19362	19362					0.0011835507810928902
LSEGVTISY	9	Unmodified	_LSEGVTISY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1;ITGB1|p.G387D|1|0.24|ENSG00000150093|chr10:32920354-32920354|C/T|missense_variant	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S2	2	968.4943237304688	1	968.493504	967.486227	0.92452	0.00089539	-0.0075506	-7.3127E-06	0.91697	0.00088808	968.4933813981232	42.681	0.51751	42.611	42.377	42.895	-0.069984					17	9	3	0	0	0	0.013464	1	16148	16148		104.8	19.527	1	106350000			20159	4080	12785	12842	19363	19363					0.0011835507810928902
LSEINKPNFY	10	Unmodified	_LSEINKPNFY_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2;DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant;DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant;DNTTIP2|p.N659Mfs*6|1|0.42|ENSG00000067334|chr1:93872163-93872163|T/-|frameshift_variant	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	HCT116MG_D190212_S1	1	612.8168334960938	2	612.816596	1223.61864	0.2857	0.00017508	0.3713	0.00022754	0.657	0.00040262	612.816797728318	39.631	0.26062	39.631	39.449	39.709	0					10	4	3	0	0	0	0.052106	1	14898	14898		85.642	51.24	1	16334000			20160	1183	12786	12843	19364	19364					0.015773798148984497
LSEINKPNFY	10	Unmodified	_LSEINKPNFY_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2;DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant;DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant;DNTTIP2|p.N659Mfs*6|1|0.42|ENSG00000067334|chr1:93872163-93872163|T/-|frameshift_variant	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	HCT116MG_D190212_S2	2	612.81689453125	2	612.816596	1223.61864	0.35196	0.00021568	0.13083	8.0173E-05	0.48278	0.00029586	612.816743855072	39.639	0.30291	39.561	39.379	39.682	-0.077839					13	5	3	0	0	0	0.017942	1	14947	14947		125.04	71.205	1	45470000			20161	1183	12786	12843	19365	19365					0.015773798148984497
LSEINKPNFY	10	Unmodified	_LSEINKPNFY_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2;DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant;DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant;DNTTIP2|p.N659Mfs*6|1|0.42|ENSG00000067334|chr1:93872163-93872163|T/-|frameshift_variant	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MSMS	HCT116MG_D190212_S3	3	612.8168334960938	2	612.816596	1223.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.913	1	39.611	39.111	40.111	-0.30137								0	0	0	0.052624	1	14802	14802		96.367	40.19	1				20162	1183	12786	12843	19366	19366					0.015773798148984497
LSEINKPNFY	10	Unmodified	_LSEINKPNFY_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2;DNTTIP2|p.N616Tfs*33|1|0.13|ENSG00000067334|chr1:93873174-93873174|T/-|frameshift_variant;DNTTIP2|p.R633Tfs*24|1|0.25|ENSG00000067334|chr1:93873124-93873125|-/T|frameshift_variant;DNTTIP2|p.N659Mfs*6|1|0.42|ENSG00000067334|chr1:93872163-93872163|T/-|frameshift_variant	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MSMS	HCT116MG_D190212_S4	4	612.8181762695312	2	612.816596	1223.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.022	1	39.642	39.142	40.142	-0.37936								0	0	0	0.57811	1	14669	14669		43.772	14.691	1				20163	1183	12786	12843	19367	19367					0.015773798148984497
LSEKEWLEILK	11	Unmodified	_LSEKEWLEILK_					0	0	0		ENST00000493078.1_1_2:234070438-234073043:+|nuORF;INPP5D|p.E850Rfs*19|1|0.36|ENSG00000168918|chr2:233193909-233193909|G/-|frameshift_variant;nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	ENST00000493078.1_1_2:234070438-234073043:+|nuORF	ENST00000493078.1_1_2:234070438-234073043:+|nuORF	MSMS	HCT116MG_D190212_S3	3	694.396484375	2	694.39521	1386.77587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.094	1	45.782	45.282	46.282	-0.31237								0	0	0	0.93456	1	17277	17277		14.405	2.1647	1				20164	5040	12787	12844	19368	19368					0.09795039634400382
LSEKIFRPISQ	11	Unmodified	_LSEKIFRPISQ_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MSMS	HCT116MG_D190212_S2	2	659.3783569335938	2	659.379894	1316.74524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.343	1	41.275	40.775	41.775	-0.068199								0	0	0	0.94012	1	15618	15618		11.495	3.3392	1		+		20165	12459	12788	12845	19369	19369					0.09953306040051757
LSEKPPYSKY	10	Unmodified	_LSEKPPYSKY_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	606.821044921875	2	606.318971	1210.62339	0.61004	0.00036988	-0.20755	-0.00012584	0.40249	0.00024404	606.3186766937176	26.829	0.57437	26.477	26.085	26.659	-0.35254					16	10	2	0	0	0	0.0097989	1	9721	9721		150.06	98.435	1	39216000			20166	3888	12789	12846	19370	19370					0.026502639576619913
LSEKPPYSKY	10	Unmodified	_LSEKPPYSKY_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	404.5483093261719	3	404.548406	1210.62339	-0.16773	-6.7856E-05	0.015482	6.2633E-06	-0.15225	-6.1593E-05	404.5484022304107	26.798	0.46932	26.446	26.085	26.554	-0.35254					14	8	2	0	0	0	0.13161	1	9729	9729		51.765	34.716	1	22002000			20167	3888	12789	12846	19371	19371					0.026502639576619913
LSEKPPYSKY	10	Unmodified	_LSEKPPYSKY_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	606.319580078125	2	606.318971	1210.62339	0.62628	0.00037973	0.06683	4.052E-05	0.69311	0.00042025	606.318985004207	26.6	0.52058	26.45	26.098	26.619	-0.14924					17	9	3	0	0	0	0.013374	1	9550	9550		135.87	90.175	1	10335000			20168	3888	12789	12846	19372	19372					0.026502639576619913
LSEKPPYSKY	10	Unmodified	_LSEKPPYSKY_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	404.54827880859375	3	404.548406	1210.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.648	1	26.499	25.999	26.999	-0.14924								0	0	0	0.051923	1	9569	9569		78.116	38.903	1				20169	3888	12789	12846	19373	19373					0.026502639576619913
LSEKPPYSKY	10	Unmodified	_LSEKPPYSKY_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	404.54827880859375	3	404.548406	1210.62339	0.096767	3.9147E-05	0.13684	5.5357E-05	0.2336	9.4503E-05	404.5484452388984	26.82	0.36349	26.509	26.275	26.639	-0.3114					10	6	2	0	0	0	0.33085	1	9575	9575		35.996	14.196	1	5608800			20170	3888	12789	12846	19374	19374					0.026502639576619913
LSEKPPYSKY	10	Unmodified	_LSEKPPYSKY_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	606.3190307617188	2	606.318971	1210.62339	1.0337	0.00062675	-0.17392	-0.00010545	0.85977	0.0005213	606.3188066050425	26.82	0.36349	26.509	26.275	26.639	-0.3114					13	6	3	0	0	0	0.019252	1	9579	9579		121.93	79.974	1	5240400			20171	3888	12789	12846	19375	19375					0.026502639576619913
LSEKQRARY	9	Unmodified	_LSEKQRARY_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	HCT116MG_D190212_S2	2	575.8203735351562	2	575.820004	1149.62546	0.35609	0.00020505	0.5078	0.0002924	0.86389	0.00049745	575.82009264784	16.624	0.26026	16.282	16.048	16.308	-0.34183					5	4	2	0	0	0	0.16306	1	5611	5611		45.7	22.963	1	10675000			20172	2215	12790	12847	19376	19376					0.05662737486136393
LSELCKWGAPG	11	Unmodified	_LSELCKWGAPG_					0	0	0			REV__ENST00000389224.7_1_16:2588309-2588624:+|nuORF	REV__ENST00000389224.7_1_16:2588309-2588624:+|nuORF	MSMS	HCT116MG_D190212_S2	2	580.7898559570312	2	580.792066	1159.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.936	1	34.778	34.278	35.278	-0.15834								0	0	0	0.90571	1	13015	13015		19.257	3.4098	1		+		20173	15297	12791	12848	19377	19377					-0.0038223174569793628
LSELGPASGRY	11	Unmodified	_LSELGPASGRY_					0	0	0			REV__ENST00000216455.8_1_14:58711555-58711642:+|nuORF	REV__ENST00000216455.8_1_14:58711555-58711642:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	575.298828125	2	575.29857	1148.58259	0.37752	0.00021719	0.81481	0.00046876	1.1923	0.00068595	575.2991424664651	31.194	0.41775	30.934	30.709	31.126	-0.26071					14	7	3	0	0	0	0.72373	1	11413	11413		13.042	0.80181	1	14228000	+		20174	14510	12792	12849	19378	19378					0.014239226380595937
LSELGWLHN	9	Unmodified	_LSELGWLHN_					0	0	0		TUBGCP3|p.T406Qfs*22|1|0.09|ENSG00000126216|chr13:112545818-112545818|T/-|frameshift_variant;nc|ENSG00000126216|Q96CW5-3|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3	TUBGCP3|p.T406Qfs*22|1|0.09|ENSG00000126216|chr13:112545818-112545818|T/-|frameshift_variant	TUBGCP3|p.T406Qfs*22|1|0.09|ENSG00000126216|chr13:112545818-112545818|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2758178710938	2	534.777274	1067.53999	0.38196	0.00020427	0.08978	4.8012E-05	0.47174	0.00025228	534.7772550049584	38.796	0.52045	38.712	38.492	39.012	-0.084621					17	9	3	0	0	0	0.52876	1	14681	14681		21.747	21.747	1	141080000			20175	2927	12793	12850	19379	19379					0.00892572300494976
LSELRCLVP	9	Unmodified	_LSELRCLVP_					0	0	0		HEYL|p.R68C|1|0.07|ENSG00000163909|chr1:39631525-39631525|G/A|missense_variant	HEYL|p.R68C|1|0.07|ENSG00000163909|chr1:39631525-39631525|G/A|missense_variant	HEYL|p.R68C|1|0.07|ENSG00000163909|chr1:39631525-39631525|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	515.2899780273438	2	515.291702	1028.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.519	1	55.519	55.019	56.019	0								0	0	0	0.27276	1	21322	21322		42.095	2.1372	1				20176	9223	12794	12851	19380	19380					0.05570973605267682
LSEMGKSADY	10	Unmodified	_LSEMGKSADY_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MSMS	HCT116MG_D190212_S3	3	550.7484130859375	2	550.750064	1099.48558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.787	1	40.485	39.985	40.985	-0.30161								0	0	0	0.94339	1	15153	15153		6.2058	1.4498	1		+		20177	12913	12795	12852	19381	19381					-0.060188076332678975
LSEPEEAAALY	11	Unmodified	_LSEPEEAAALY_					0	0	0		ENSG00000164062|ENST00000296456|APEH;ENST00000463616.1_1_3:49711921-49713416:+|nuORF	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MULTI-MSMS	HCT116MG_D190212_S2	2	597.2924194335938	2	596.790244	1191.56593	0.4961	0.00029607	0.16109	9.6138E-05	0.65719	0.00039221	596.7901870549027	44.048	0.30769	43.969	43.865	44.173	-0.078369					9	5	2	0	0	0	0.45729	1	16740	16740		49.933	23.665	1	23324000			20178	4662	12796	12853	19382	19382					-0.02218623038561418
LSEPQTTS	8	Unmodified	_LSEPQTTS_					0	0	0		ENST00000264712.7_1_2:26151240-26151528:-|nuORF	ENST00000264712.7_1_2:26151240-26151528:-|nuORF	ENST00000264712.7_1_2:26151240-26151528:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	862.4165649414062	1	862.415253	861.407977	0.70494	0.00060795	0.50846	0.0004385	1.2134	0.0010464	862.4155091394306	22.523	0.20843	22.505	22.387	22.595	-0.018869					6	3	2	0	0	0	0.48901	1	7921	7921		42.095	6.0504	1	3728500			20179	6897	12797	12854	19383	19383					-0.028270775071405296
LSEPQTTS	8	Unmodified	_LSEPQTTS_					0	0	0		ENST00000264712.7_1_2:26151240-26151528:-|nuORF	ENST00000264712.7_1_2:26151240-26151528:-|nuORF	ENST00000264712.7_1_2:26151240-26151528:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		1	862.415253	861.407977	0.64418	0.00055555	-0.23658	-0.00020403	0.4076	0.00035152	862.4150741685655	22.675	0.1559	22.437	22.341	22.497	-0.23758	-0.033696	-0.00032959	NaN	42.095	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1060400			20180	6897	12797	12854							-0.028270775071405296
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S1	1	1023.4988403320312	1	1023.49932	1022.49204	0.13637	0.00013958	-0.37905	-0.00038795	-0.24268	-0.00024838	1023.4987212862688	38.415	0.4171	38.415	38.175	38.592	0					13	7	3	0	0	0	0.0057285	1	14390	14390		131.27	63.187	1	31225000			20181	2370	12798	12855	19384	19384					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2527465820312	2	512.253297	1022.49204	-0.36568	-0.00018732	-0.23255	-0.00011913	-0.59823	-0.00030645	512.2531052671306	38.41	0.2608	38.41	38.279	38.54	0					7	4	2	0	0	0	0.042978	1	14403	14403		78.149	34.291	1	15303000			20182	2370	12798	12855	19385	19385					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S2	2	1023.4998779296875	1	1023.49932	1022.49204	0.57635	0.0005899	0.034009	3.4808E-05	0.61036	0.0006247	1023.499249472852	38.491	0.4755	38.407	38.175	38.65	-0.084785					24	8	4	0	0	0	0.0077497	1	14447	14447		118.89	50.814	1	205940000			20183	2370	12798	12855	19386	19386					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2534790039062	2	512.253297	1022.49204	0.20293	0.00010395	-0.10444	-5.35E-05	0.098488	5.0451E-05	512.2531514512681	38.473	0.47518	38.385	38.224	38.699	-0.087818					17	8	3	0	0	0	0.020181	1	14464	14464		96.285	41.511	1	36829000			20184	2370	12798	12855	19387	19387					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S3	3	1023.4991455078125	1	1023.49932	1022.49204	0.47807	0.0004893	-0.013707	-1.4029E-05	0.46436	0.00047527	1023.4992834179134	38.716	0.46836	38.415	38.196	38.664	-0.30137					23	8	4	0	0	0	0.0077497	1	14343	14343		118.89	50.814	1	32832000			20185	2370	12798	12855	19388	19388					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2536010742188	2	512.253297	1022.49204	0.048748	2.4971E-05	-0.055233	-2.8293E-05	-0.0064849	-3.3219E-06	512.2532422443423	38.684	0.46843	38.383	38.144	38.613	-0.30137					16	8	3	0	0	0	0.063511	1	14360	14360		68.081	13.307	1	7322500			20186	2370	12798	12855	19389	19389					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S4	4	1023.499755859375	1	1023.49932	1022.49204	0.51893	0.00053112	-0.0031372	-3.2109E-06	0.51579	0.00052791	1023.4991685217979	38.795	0.35863	38.414	38.232	38.591	-0.38163					12	6	3	0	0	0	0.01389	1	14234	14234		103.75	48.975	1	7281900			20187	2370	12798	12855	19390	19390					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MSMS	HCT116MG_D190212_S4	4	512.253173828125	2	512.253297	1022.49204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.817	1	38.435	37.935	38.935	-0.38163								0	0	0	0.1044	1	14240	14240		54.774	22.468	1				20188	2370	12798	12855	19391	19391					-0.01830546410246825
LSEQVSMLLHY	11	Unmodified	_LSEQVSMLLHY_					0	0	0			REV__nc|ENSG00000148672|P00367-2|GLUD1	REV__nc|ENSG00000148672|P00367-2|GLUD1	MSMS	HCT116MG_D190212_S3	3	660.3383178710938	2	660.336838	1318.65912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.607	1	47.292	46.792	47.792	-0.31525								0	0	0	0.95196	1	17882	17882		5.2969	2.0156	1		+		20189	12552	12799	12856	19392	19392					0.012539781430177754
LSERADWQY	9	Unmodified	_LSERADWQY_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	HCT116MG_D190212_S1	1	584.2760009765625	2	584.275095	1166.53564	0.63621	0.00037172	0.83589	0.00048839	1.4721	0.00086011	584.2756834391323	37.12	0.20744	37.12	36.99	37.197	0					5	3	2	0	0	0	0.064006	1	13885	13885		67.838	36.57	1	11612000			20190	2114	12800	12857	19393	19393					-0.040969369131062194
LSERADWQY	9	Unmodified	_LSERADWQY_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	HCT116MG_D190212_S2	2	584.2758178710938	2	584.275095	1166.53564	0.41714	0.00024373	0.49819	0.00029108	0.91533	0.00053481	584.2752947764842	37.155	0.41295	37.052	36.819	37.232	-0.10318					9	7	2	0	0	0	0.053544	1	13932	13932		72.968	38.566	1	59876000			20191	2114	12800	12857	19394	19394					-0.040969369131062194
LSERYAELY	9	Unmodified	_LSERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S1	1	572.2876586914062	2	572.287671	1142.56079	0.1337	7.6512E-05	0.19664	0.00011253	0.33033	0.00018904	572.2876991749376	39.475	0.36308	39.475	39.294	39.657	0					18	6	4	0	0	0	0.0055242	1	14792	14792		133.05	44.098	1	124090000			20192	5985	12801	12858	19395	19395					-0.004788821105421448
LSERYAELY	9	Unmodified	_LSERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S1	1	1143.568115234375	1	1143.56807	1142.56079	0.39914	0.00045644	0.2279	0.00026062	0.62703	0.00071706	1143.567960785923	39.461	0.20693	39.461	39.346	39.553	0					5	3	2	0	0	0	0.12421	1	14840	14840		53.404	7.7044	1	5800800			20193	5985	12801	12858	19396	19396					-0.004788821105421448
LSERYAELY	9	Unmodified	_LSERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S2	2	572.2877197265625	2	572.287671	1142.56079	0.42299	0.00024207	-0.45609	-0.00026101	-0.033099	-1.8942E-05	572.2873168513669	39.482	0.7146	39.404	39.226	39.94	-0.077839					32	13	5	0	0	0	0.011132	2	14841	14827;14841		110.55	25.281	1	769160000			20194	5985	12801	12858	19397;19398	19398					-0.004788821105421448
LSERYAELY	9	Unmodified	_LSERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S2	2	1143.5693359375	1	1143.56807	1142.56079	0.61028	0.00069789	-0.19586	-0.00022398	0.41442	0.00047391	1143.567437122134	39.483	0.19961	39.405	39.277	39.477	-0.077835					6	3	2	0	0	0	0.0035183	1	14870	14870		157.8	65.142	1	78237000			20195	5985	12801	12858	19399	19399					-0.004788821105421448
LSERYAELY	9	Unmodified	_LSERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S4	4	572.2879638671875	2	572.287671	1142.56079	0.59599	0.00034108	-0.418	-0.00023921	0.17799	0.00010186	572.2873883280262	39.84	0.34086	39.461	39.36	39.701	-0.37936					74	31	3	0	0	0	0.032914	1	14589	14589		83.429	4.7007	1	88800000			20196	5985	12801	12858	19400	19400					-0.004788821105421448
LSEVNRTGTQY	11	Unmodified	_LSEVNRTGTQY_					0	0	0		nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	MULTI-MSMS	HCT116MG_D190212_S1	1	634.317626953125	2	634.317491	1266.62043	0.64516	0.00040924	-0.25146	-0.00015951	0.3937	0.00024973	634.3171680079414	25.013	0.2621	25.013	24.83	25.092	0					7	4	2	0	0	0	0.69585	1	9010	9010		34.222	14.86	1	5576300			20197	4848	12802	12859	19401	19401					-0.0022161116712595685
LSEVNRTGTQY	11	Unmodified	_LSEVNRTGTQY_					0	0	0		nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	MULTI-MSMS	HCT116MG_D190212_S2	2	634.3177490234375	2	634.317491	1266.62043	0.48449	0.00030732	-0.15007	-9.519E-05	0.33443	0.00021213	634.3173771428342	25.373	0.31277	24.998	24.816	25.129	-0.37521					12	5	3	0	0	0	3.7506E-05	1	9147	9147		200.78	107.61	1	49625000			20198	4848	12802	12859	19402	19402					-0.0022161116712595685
LSEVNRTGTQY	11	Unmodified	_LSEVNRTGTQY_					0	0	0		nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	MULTI-MSMS	HCT116MG_D190212_S3	3	634.3176879882812	2	634.317491	1266.62043	0.5863	0.0003719	-0.14327	-9.0878E-05	0.44303	0.00028102	634.3173357498914	25.18	0.36506	25.074	24.787	25.152	-0.10618					11	6	3	0	0	0	0.01267	1	8983	8983		168.29	100.45	1	14523000			20199	4848	12802	12859	19403	19403					-0.0022161116712595685
LSEVNRTGTQY	11	Unmodified	_LSEVNRTGTQY_					0	0	0		nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	MULTI-MSMS	HCT116MG_D190212_S4	4	634.3167724609375	2	634.317491	1266.62043	0.56603	0.00035904	-0.031097	-1.9725E-05	0.53494	0.00033932	634.3173092302308	25.364	0.36411	25.084	24.954	25.318	-0.27958					12	6	3	0	0	0	0.035922	1	8999	8999		142.94	72.609	1	4880200			20200	4848	12802	12859	19404	19404					-0.0022161116712595685
LSEWLHRMQAL	11	Unmodified	_LSEWLHRMQAL_					0	0	0			REV__SEMA3D|p.S481Rfs*88|1|0.11|ENSG00000153993|chr7:85020293-85020294|-/CTTT|frameshift_variant	REV__SEMA3D|p.S481Rfs*88|1|0.11|ENSG00000153993|chr7:85020293-85020294|-/CTTT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	462.1468505859375	3	461.911573	1382.71289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.622	1	23.239	22.739	23.739	-0.38324								0	0	0	0.95976	1	8427	8427		1.2148	0	1		+		20201	17504	12803	12860	19405	19405					0.036841953654175086
LSEWQKELY	9	Unmodified	_LSEWQKELY_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	598.3036499023438	2	598.303321	1194.59209	0.41197	0.00024648	0.18296	0.00010947	0.59493	0.00035595	598.3034305541961	44.33	0.26814	44.33	44.195	44.464	0					8	4	3	0	0	0	0.031831	1	16800	16800		84.522	40.75	1	10245000			20202	6072	12804	12861	19406	19406					0.0025769092358132184
LSEWQKELY	9	Unmodified	_LSEWQKELY_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	598.3037719726562	2	598.303321	1194.59209	0.5546	0.00033182	-0.28242	-0.00016897	0.27218	0.00016285	598.3032321434129	44.333	0.31303	44.249	44.012	44.325	-0.084797					12	5	3	0	0	0	0.0039465	1	16838	16838		151.48	81.148	1	72634000			20203	6072	12804	12861	19407	19407					0.0025769092358132184
LSEWQKELY	9	Unmodified	_LSEWQKELY_					0	0	0		ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant;ENSG00000196453|ENST00000247930|ZNF777	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	ZNF777|p.P504Rfs*5|1|0.44|ENSG00000196453|chr7:149432761-149432761|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	598.3038940429688	2	598.303321	1194.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.597	1	44.29	43.79	44.79	-0.30759								0	0	0	0.016501	1	16676	16676		96.936	43.103	1				20204	6072	12804	12861	19408	19408					0.0025769092358132184
LSFCHRRYWFW	11	Unmodified	_LSFCHRRYWFW_					0	0	0			REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF	REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF	MSMS	HCT116MG_D190212_S2	2	800.8840942382812	2	800.885155	1599.75576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.897	1	43.818	43.318	44.318	-0.078373								0	0	0	0.95954	1	16657	16657		3.2813	2.088	1		+		20205	15471	12805	12862	19409	19409					-0.020129897865217572
LSFFFKFY	8	Unmodified	_LSFFFKFY_					0	0	0		XDH|p.P555Qfs*67|1|0.27|ENSG00000158125|chr2:31373895-31373895|G/-|frameshift_variant;XDH|p.Q919Rfs*10|1|0.37|ENSG00000158125|chr2:31350104-31350104|C/-|frameshift_variant;ENSG00000158125|ENST00000379416|XDH	XDH|p.P555Qfs*67|1|0.27|ENSG00000158125|chr2:31373895-31373895|G/-|frameshift_variant	XDH|p.P555Qfs*67|1|0.27|ENSG00000158125|chr2:31373895-31373895|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	549.285400390625	2	549.786579	1097.5586	0.38597	0.0002122	0.63656	0.00034997	1.0225	0.00056217	549.7869230655851	33.961	0.31158	33.786	33.604	33.916	-0.17512					9	5	2	0	0	0	0.26661	1	12623	12623		18.135	5.0925	1	29244000			20206	4359	12806	12863	19410	19410					0.01372733942321247
LSFLIKRLPI	10	Unmodified	_LSFLIKRLPI_					0	0	0		OR51I2|p.P160S|1|0.21|ENSG00000187918|chr11:5453966-5453966|C/T|missense_variant	OR51I2|p.P160S|1|0.21|ENSG00000187918|chr11:5453966-5453966|C/T|missense_variant	OR51I2|p.P160S|1|0.21|ENSG00000187918|chr11:5453966-5453966|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	600.4000244140625	2	600.397359	1198.78016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.13	1	49.815	49.315	50.315	-0.31525								0	0	0	0.95507	1	18896	18896		3.5965	0.31518	1				20207	9719	12807	12864	19411	19411					0.18872593638661783
LSFLRKAMK	9	Unmodified	_LSFLRKAMK_					0	0	0		ENST00000524227.5_1_8:41525962-41555361:-|nuORF;nc|ENSG00000029534|P16157-16|ANK1;KIAA0146-ANK1|1|fusion;KIAA0146-ANK1|2|fusion;KIAA0146-ANK1|3|fusion;KIAA0146-ANK1|5|fusion;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;KIAA0146-ANK1|4|fusion	ENST00000524227.5_1_8:41525962-41555361:-|nuORF	ENST00000524227.5_1_8:41525962-41555361:-|nuORF	MSMS	HCT116MG_D190212_S4	4	547.3323974609375	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.726	1	55.414	54.914	55.914	-0.312								0	0	0	0.76818	1	20874	20874		7.2892	0	1				20208	963	12808	12865	19412	19412					0.1051524563017665
LSFMARFYDSY	11	Unmodified	_LSFMARFYDSY_					0	0	0			REV__KLHL32|p.C63Y|1|0.09|ENSG00000186231|chr6:96976161-96976161|G/A|missense_variant	REV__KLHL32|p.C63Y|1|0.09|ENSG00000186231|chr6:96976161-96976161|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	700.322021484375	2	700.321188	1398.62782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.341	1	53.038	52.538	53.538	-0.30305								0	0	0	0.94416	1	20186	20186		9.3831	0.63772	1		+		20209	16932	12809	12866	19413	19413					-0.05554594891077613
LSFPKCWEDY	10	Unmodified	_LSFPKCWEDY_					0	0	0		AluSc_dup26247|chr14:55143427-55143722:-|3.947558539677292|0.0255733500930304|7.27|477.0|18|3|anti-sense	AluSc_dup26247|chr14:55143427-55143722:-|3.947558539677292|0.0255733500930304|7.27|477.0|18|3|anti-sense	AluSc_dup26247|chr14:55143427-55143722:-|3.947558539677292|0.0255733500930304|7.27|477.0|18|3|anti-sense	MSMS	HCT116MG_D190212_S2	2	643.9580688476562	2	644.289356	1286.56416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.094	1	48.939	48.439	49.439	-0.15405								0	0	0	0.90475	1	18778	18778		14.838	4.0143	1				20210	100	12810	12867	19414	19414					-0.06765955328182827
LSFPRSWPPD	10	Unmodified	_LSFPRSWPPD_					0	0	0		ENST00000270066.10_1_19:44258808-44259084:-|nuORF	ENST00000270066.10_1_19:44258808-44259084:-|nuORF	ENST00000270066.10_1_19:44258808-44259084:-|nuORF	MSMS	HCT116MG_D190212_S4	4	601.3080444335938	2	601.303655	1200.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.934	1	43.56	43.06	44.06	-0.37373								0	0	0	0.91638	1	16167	16167		12.241	3.4953	1				20211	6918	12811	12868	19415	19415					0.00048530363278587174
LSFRGTYTIP	10	Unmodified	_LSFRGTYTIP_					0	0	0			REV__ENSG00000120738|ENST00000239938|EGR1	REV__ENSG00000120738|ENST00000239938|EGR1	MULTI-SECPEP	HCT116MG_D190212_S3	3	577.1263427734375	2	577.813856	1153.61316	0.55858	0.00032275	0.078997	4.5646E-05	0.63757	0.0003684	577.8138159490462	56.25	0.15679	55.966	55.888	56.045	-0.28367					4	2	2	0	0	0	0.2912	1	21333	21333		10.824	4.1008	1	1419400	+		20212	11697	12812	12869	19416	19416					0.04249701023104535
LSFSLANPDVP	11	Unmodified	_LSFSLANPDVP_					0	0	0			REV__nc|ENSG00000099866|Q13477-4|MADCAM1	REV__nc|ENSG00000099866|Q13477-4|MADCAM1	MSMS	HCT116MG_D190212_S2	2	580.302001953125	2	580.303321	1158.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.658	1	36.543	36.043	37.043	-0.11478								0	0	0	0.81687	1	13715	13715		30.703	0.86286	1		+		20213	11048	12813	12870	19417	19417					0.019136909235385247
LSFVAMQRPG	10	Unmodified	_LSFVAMQRPG_					0	0	0			REV__ENSG00000147234|ENST00000683843|FRMPD3	REV__ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	HCT116MG_D190212_S2	2	552.7930297851562	2	553.294776	1104.575	0.5788	0.00032025	0.49057	0.00027143	1.0694	0.00059168	553.2952580725643	34.443	0.30968	34.268	34.124	34.433	-0.17512					8	5	2	0	0	0	0.29999	1	12812	12812		13.042	0	1	19347000	+		20214	12506	12814	12871	19418	19418					0.02689491836781599
LSFVDVWFSSN	11	Unmodified	_LSFVDVWFSSN_					0	0	0		OR5M3|p.T89Qfs*8|1|0.37|ENSG00000174937|chr11:56470233-56470233|T/-|frameshift_variant;ENSG00000174937|ENST00000641993|OR5M3	OR5M3|p.T89Qfs*8|1|0.37|ENSG00000174937|chr11:56470233-56470233|T/-|frameshift_variant	OR5M3|p.T89Qfs*8|1|0.37|ENSG00000174937|chr11:56470233-56470233|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	650.8126220703125	2	650.814053	1299.61355	0.70882	0.00046131	-3.6586	-0.0023811	-2.9498	-0.0019198	650.8120327658296	29.249	0.25529	28.933	28.812	29.067	-0.31613					8	4	3	0	0	0	0.35116	1	10736	10736		59.368	20.754	1	24263000			20215	5352	12815	12872	19419	19419					-0.024269240476996856
LSFYDLGDWGL	11	Unmodified	_LSFYDLGDWGL_					0	0	0		NLRP12|p.N951Y|1|0.07|ENSG00000142405|chr19:53798319-53798319|T/A|missense_variant	NLRP12|p.N951Y|1|0.07|ENSG00000142405|chr19:53798319-53798319|T/A|missense_variant	NLRP12|p.N951Y|1|0.07|ENSG00000142405|chr19:53798319-53798319|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	643.3084716796875	2	643.308603	1284.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.718	1	46.718	46.218	47.218	0								0	0	0	0.93552	1	17733	17733		13.906	1.6654	1				20216	9698	12816	12873	19420	19420					-0.028263264219958728
LSGAQLRLLL	10	Unmodified	_LSGAQLRLLL_					0	0	0			REV__ENST00000433465.1_1_21:46713271-46716280:+|nuORF	REV__ENST00000433465.1_1_21:46713271-46716280:+|nuORF	MSMS	HCT116MG_D190212_S4	4	542.3460083007812	2	542.347866	1082.68118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.341	1	58.052	57.552	58.552	-0.28879								0	0	0	0.95648	1	21925	21925		3.2813	1.4371	1		+		20217	15596	12817	12874	19421	19421					0.14314570673764138
LSGATILY	8	Unmodified	_LSGATILY_					0	0	0		nc|ENSG00000166948|O95932-2|TGM6;ENSG00000166948|ENST00000202625|TGM6	nc|ENSG00000166948|O95932-2|TGM6	nc|ENSG00000166948|O95932-2|TGM6	MULTI-MSMS	HCT116MG_D190212_S2	2	837.4722290039062	1	837.471646	836.46437	0.7545	0.00063187	0.1413	0.00011834	0.8958	0.00075021	837.4717124747395	55.045	0.25447	54.857	54.714	54.968	-0.18797					7	4	2	0	0	0	0.13911	1	21227	21227		86.121	19.086	1	59431000			20218	4893	12818	12875	19422	19422					0.039595951201818025
LSGEIGVLF	9	Unmodified	_LSGEIGVLF_					0	0	0			REV__ENSG00000104147|ENST00000220514|OIP5	REV__ENSG00000104147|ENST00000220514|OIP5	MULTI-MSMS	HCT116MG_D190212_S2	2	467.76593017578125	2	467.765843	933.517133	0.3883	0.00018163	0.11805	5.522E-05	0.50635	0.00023685	467.7657555849777	44.944	0.31255	44.853	44.685	44.998	-0.090546					11	5	3	0	0	0	0.035914	1	17087	17087		81.613	7.1903	1	35213000	+		20219	11207	12819	12876	19423	19423					0.04771553183013566
LSGEIGVLF	9	Unmodified	_LSGEIGVLF_					0	0	0			REV__ENSG00000104147|ENST00000220514|OIP5	REV__ENSG00000104147|ENST00000220514|OIP5	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	467.765843	933.517133	0.19017	8.8956E-05	0.36783	0.00017206	0.558	0.00026101	467.76600698423186	44.957	0.20663	44.957	44.88	45.087	0	0.051769	5.565E-05	NaN	81.613	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9206600	+		20220	11207	12819	12876							0.04771553183013566
LSGEIGVLF	9	Unmodified	_LSGEIGVLF_					0	0	0			REV__ENSG00000104147|ENST00000220514|OIP5	REV__ENSG00000104147|ENST00000220514|OIP5	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	467.765843	933.517133	0.3883	0.00018163	0.11805	5.522E-05	0.50635	0.00023685	467.7657555849777	44.944	0.31255	44.853	44.685	44.998	-0.090546	-0.051769	-0.00017803	NaN	81.613	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35213000	+		20221	11207	12819	12876							0.04771553183013566
LSGLGRSKEV	10	Unmodified	_LSGLGRSKEV_					0	0	0		nc|ENSG00000170500|Q1L5Z9-2|LONRF2;ENSG00000170500|ENST00000393437|LONRF2	nc|ENSG00000170500|Q1L5Z9-2|LONRF2	nc|ENSG00000170500|Q1L5Z9-2|LONRF2	MULTI-MSMS	HCT116MG_D190212_S3	3	523.3037719726562	2	523.303655	1044.59276	0.29672	0.00015527	0.47876	0.00025054	0.77548	0.00040581	523.3036233874781	48.305	1.2382	47.989	47.21	48.449	-0.31596					40	23	2	0	0	0	0.87059	1	18178	18178		5.7319	0.83484	1	7759200			20222	5135	12820	12877	19424	19424					0.07224530363282611
LSGLRIKY	8	Unmodified	_LSGLRIKY_					0	0	0			REV__XKRX|p.P237S|1|0.32|ENSG00000182489|chrX:100914979-100914979|G/A|missense_variant	REV__XKRX|p.P237S|1|0.32|ENSG00000182489|chrX:100914979-100914979|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	475.6709289550781	2	475.295102	948.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.393	1	52.051	51.551	52.551	-0.3416								0	0	0	0.8837	1	19530	19530		8.5933	0	1		+		20223	18059	12821	12878	19425	19425					0.09930654548122675
LSGLRQQSI	9	Unmodified	_LSGLRQQSI_					0	0	0		nc|ENSG00000069018|Q9HCX4-3|TRPC7;ENSG00000069018|ENST00000513104|TRPC7	nc|ENSG00000069018|Q9HCX4-3|TRPC7	nc|ENSG00000069018|Q9HCX4-3|TRPC7	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2909240722656	2	501.290548	1000.56654	0.27426	0.00013749	0.11315	5.6721E-05	0.38741	0.00019421	501.29058861036145	44.542	0.58122	44.542	44.195	44.777	0					17	10	2	0	0	0	0.39784	1	16927	16927		22.736	2.3217	1	12770000			20224	1212	12822	12879	19426	19426					0.06628261191792717
LSGLRRLERS	10	Unmodified	_LSGLRRLERS_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	MSMS	HCT116MG_D190212_S2	2	396.2392578125	3	396.238678	1185.6942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.879	1	42.809	42.309	43.309	-0.069984								0	0	0	0.92917	1	16242	16242		5.4027	0.68679	1		+		20225	11791	12823	12880	19427	19427					0.10878401785839742
LSGPGEEQLA	10	Unmodified	_LSGPGEEQLA_					0	0	0		ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555232.5_1_14:21538555-21549271:+|nuORF;nc|ENSG00000165801|Q8TER5-2|ARHGEF40	ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant	ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1000.4966430664062	1	1000.49457	999.48729	0.44491	0.00044513	-0.031872	-3.1888E-05	0.41304	0.00041324	1000.4948601508252	24.295	0.25989	24.233	24.051	24.311	-0.061449					8	4	2	0	0	0	0.71349	1	8634	8634		19.257	1.1106	1	3616500			20226	182	12824	12881	19428	19428					-0.01247430553007689
LSGPVTPDGA	10	Unmodified	_LSGPVTPDGA_					0	0	0			REV__ENSG00000166685|ENST00000299886|COG1	REV__ENSG00000166685|ENST00000299886|COG1	MULTI-MSMS	HCT116MG_D190212_S4	4	913.4617309570312	1	913.462538	912.455261	0.68881	0.00062921	-1.3138	-0.0012001	-0.625	-0.00057092	913.461315744311	30.314	0.2501	29.956	29.753	30.003	-0.35711					8	4	3	0	0	0	0.56527	1	10980	10980		30.637	0	1	11589000	+		20227	13117	12825	12882	19429	19429					-0.004467982361461509
LSGSCTTQCPC	11	Unmodified	_LSGSCTTQCPC_					0	0	0			REV__ENSG00000186971|ENST00000334068|KRTAP13-4	REV__ENSG00000186971|ENST00000334068|KRTAP13-4	MSMS	HCT116MG_D190212_S2	2	549.8463745117188	2	550.214477	1098.4144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.276	1	23.896	23.396	24.396	-0.38003								0	0	0	0.94538	1	8692	8692		8.7454	0.83525	1		+		20228	13908	12826	12883	19430	19430					-0.1308696693395177
LSGVAGYK	8	Unmodified	_LSGVAGYK_					0	0	0			REV__ENST00000350896.3_1_8:16035456-16050289:-|nuORF	REV__ENST00000350896.3_1_8:16035456-16050289:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	397.1628723144531	2	397.723978	793.433404	0.071185	2.8312E-05	0.25389	0.00010098	0.32508	0.00012929	397.72394156806064	26.308	0.41412	25.946	25.766	26.18	-0.36164					16	7	3	0	0	0	0.31097	1	9600	9600		7.2892	4.9865	1	102840000	+		20229	15022	12827	12884	19431	19431					0.028424418059557865
LSGYAMVL	8	Unmodified	_LSGYAMVL_					0	0	0			REV__nc|nan|Q9BWL3-5|C1orf43	REV__nc|nan|Q9BWL3-5|C1orf43	MULTI-SECPEP	HCT116MG_D190212_S2	2	427.2281799316406	2	427.228039	852.441526	0.22464	9.5974E-05	0.099747	4.2615E-05	0.32439	0.00013859	427.2279546807171	41.66	0.25768	41.592	41.447	41.705	-0.068195					7	4	2	0	0	0	0.24939	1	15776	15776		30.225	0	1	10528000	+		20230	12399	12828	12885	19432	19432					0.00940252731061264
LSGYQSDLEYL	11	Unmodified	_LSGYQSDLEYL_					0	0	0			REV__ENSG00000196275|ENST00000451013|GTF2IRD2	REV__ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	HCT116MG_D190212_S2	2	644.74755859375	2	644.3088	1286.60305	0.53335	0.00034364	0.074295	4.7869E-05	0.60764	0.00039151	644.3085673839158	38.673	0.36896	38.588	38.437	38.806	-0.084618					12	6	3	0	0	0	0.68267	1	14603	14603		26.268	3.5319	1	38969000	+		20231	13483	12829	12886	19433	19433					-0.028789514927893833
LSHGSLLEAP	10	Unmodified	_LSHGSLLEAP_					0	0	0			REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF	REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2774047851562	2	512.277106	1022.53966	0.30755	0.00015755	0.17544	8.9872E-05	0.48298	0.00024742	512.2771488052106	41.064	0.20831	40.762	40.632	40.84	-0.30185					6	3	2	0	0	0	0.40515	1	15291	15291		41.84	3.2249	1	5358800	+		20232	16751	12830	12887	19434	19434					0.029291525806115715
LSHKERKEILT	11	Unmodified	_LSHKERKEILT_					0	0	0		ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	MULTI-SECPEP	HCT116MG_D190212_S2	2	451.7765808105469	3	451.933143	1352.7776	0.33385	0.00015088	-1.1051	-0.00049944	-0.77127	-0.00034856	451.93261217811994	52.219	0.72147	52.032	51.625	52.347	-0.18725					18	13	2	0	0	0	0.36397	1	20179	20179		1.1098	1.1098	1	12407000			20233	6047	12831	12888	19435	19435					0.11532093443042868
LSHPLRVVP	9	Unmodified	_LSHPLRVVP_					0	0	0			REV__ENST00000407418.7_1_22:39261369-39261624:-|nuORF	REV__ENST00000407418.7_1_22:39261369-39261624:-|nuORF	MSMS	HCT116MG_D190212_S1	1	509.31292724609375	2	509.313826	1016.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.097	1	53.097	52.597	53.597	0								0	0	0	0.768	1	20326	20326		7.9102	1.7044	1		+		20234	15422	12832	12889	19436	19436					0.10545745813749363
LSHSGAGR	8	Unmodified	_LSHSGAGR_					0	0	0			REV__PTPN5|p.E272Dfs*40|1|0.08|ENSG00000110786|chr11:18740702-18740703|-/CCATG|frameshift_variant	REV__PTPN5|p.E272Dfs*40|1|0.08|ENSG00000110786|chr11:18740702-18740703|-/CCATG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	784.40771484375	1	784.406026	783.39875	0.85205	0.00066835	2.3534	0.001846	3.2055	0.0025144	784.4082075404664	57.099	0.31285	56.82	56.677	56.99	-0.27913					8	5	2	0	0	0	0.85329	1	21746	21746		4.756	0	1	846690	+		20235	11409	12833	12890	19437	19437					-0.0016138128214606695
LSHTVVDII	9	Unmodified	_LSHTVVDII_					0	0	0		tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	tr|U7T2Q7|U7T2Q7_FUSNUFAD/NAD(P)-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00423PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	498.3103332519531	2	498.78985	995.565146	0.47893	0.00023889	-0.098115	-4.8939E-05	0.38082	0.00018995	498.7896988971283	54.001	0.25481	54.001	53.822	54.077	0					10	4	3	0	0	0	0.16908	1	20717	20717		14.838	0.93222	1	153060000			20236	18581	12834	12891	19438	19438					0.06718627103043673
LSIIAGPV	8	Unmodified	_LSIIAGPV_					0	0	0			REV__ENST00000358127.8_1_9:36839016-36839127:-|nuORF	REV__ENST00000358127.8_1_9:36839016-36839127:-|nuORF	MSMS	HCT116MG_D190212_S3	3	385.2442321777344	2	385.244547	768.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.359	1	36.058	35.558	36.558	-0.30042								0	0	0	0.8837	1	13432	13432		10.183	0	1		+		20237	15058	12835	12892	19439	19439					0.08104202845436248
LSIICVGLLY	10	Unmodified	_LSIICVGLLY_					0	0	0		nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	MSMS	HCT116MG_D190212_S4	4	547.3202514648438	2	547.319928	1092.6253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.267	1	47.9	47.4	48.4	-0.36728								0	0	0	0.91906	1	17871	17871		11.64	2.2572	1				20238	3215	12836	12893	19440	19440					0.08269601441929808
LSIIFKMIP	9	Unmodified	_LSIIFKMIP_					0	0	0			REV__ENST00000602574.5_1_10:22607528-22607842:+|nuORF	REV__ENST00000602574.5_1_10:22607528-22607842:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	532.1512451171875	2	531.325014	1060.63547	0.59615	0.00031675	-0.12043	-6.3987E-05	0.47573	0.00025276	531.3248503971582	51.943	1.7505	51.759	51.013	52.763	-0.18369					96	33	5	0	0	0	0.65706	1	19696	19696		7.9102	0.62092	1	436730000	+		20239	16756	12837	12894	19441	19441					0.1075820916714747
LSIIFKMIP	9	Unmodified	_LSIIFKMIP_					0	0	0			REV__ENST00000602574.5_1_10:22607528-22607842:+|nuORF	REV__ENST00000602574.5_1_10:22607528-22607842:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	531.325014	1060.63547	0.52929	0.00028122	-0.10317	-5.4817E-05	0.42612	0.00022641	531.3248533960356	52.415	1.1893	52.109	51.738	52.927	-0.3064	0.11305	-6.4158E-05	NaN	7.9102	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27687000	+		20240	16756	12837	12894							0.1075820916714747
LSIILRVLKHF	11	Unmodified	_LSIILRVLKHF_					0	0	0		ENST00000369760.8_1_6:80877466-80879537:+|nuORF;ENST00000356489.9_1_6:80877424-80881050:+|nuORF	ENST00000369760.8_1_6:80877466-80879537:+|nuORF	ENST00000369760.8_1_6:80877466-80879537:+|nuORF	MSMS	HCT116MG_D190212_S3	3	669.93603515625	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.35	1	52.042	51.542	52.542	-0.30754								0	0	0	0.95113	1	19788	19788		5.7319	2.4505	1				20241	7299	12838	12895	19442	19442					0.19931356450001658
LSIKLRIKKKK	11	Unmodified	_LSIKLRIKKKK_					0	0	0			REV__ENST00000466133.1_1_3:159819159-159819552:+|nuORF	REV__ENST00000466133.1_1_3:159819159-159819552:+|nuORF	MSMS	HCT116MG_D190212_S2	2	677.8241577148438	2	677.984664	1353.95478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.525	1	41.457	40.957	41.957	-0.068199								0	0	0	0.9598	1	15693	15693		1.1933	0.88631	1		+		20242	15825	12839	12896	19443	19443					0.2919559378381109
LSIMVKMLP	9	Unmodified	_LSIMVKMLP_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MSMS	HCT116MG_D190212_S4	4	516.3017578125	2	516.303224	1030.5919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.399	1	43.025	42.525	43.525	-0.37433								0	0	0	0.76781	1	15952	15952		8.5933	0	1				20243	5302	12840	12897	19444	19444					0.07782276398370414
LSIPHTSRS	9	Unmodified	_LSIPHTSRS_					0	0	0		ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	MSMS	HCT116MG_D190212_S3	3	499.2749328613281	2	499.274898	996.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.172	1	36.871	36.371	37.371	-0.30137								0	0	0	0.76923	1	13760	13760		3.5965	1.019	1				20244	5370	12841	12898	19445	19445					0.036836881577073655
LSIQAGGL	8	Unmodified	_LSIQAGGL_					0	0	0			REV__ENSG00000113645|ENST00000265293|WWC1	REV__ENSG00000113645|ENST00000265293|WWC1	MULTI-MSMS	HCT116MG_D190212_S2	2	379.723876953125	2	379.723978	757.433404	-0.11025	-4.1864E-05	0.13718	5.2092E-05	0.026935	1.0228E-05	379.7239496655039	45.219	0.31149	45.127	44.996	45.307	-0.092472					8	5	2	0	0	0	0.48901	1	17217	17217		42.095	0	1	35335000	+		20245	11491	12842	12899	19446	19446					0.044984418059470954
LSIRHKKVPH	10	Unmodified	_LSIRHKKVPH_					0	0	0			REV__tr|U7SUE9|U7SUE9_FUSNUDCDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01210PE=4SV=1	REV__tr|U7SUE9|U7SUE9_FUSNUDCDdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01210PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	607.8779907226562	2	607.877656	1213.74076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.525	1	60.525	60.025	61.025	0								0	0	0	0.96404	1	23332	23332		3.2813	1.4371	1		+		20246	17829	12843	12900	19447	19447					0.14243886407803075
LSITGTYDLK	10	Unmodified	_LSITGTYDLK_					0	0	0		nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1;ENST00000489769.1_1_14:94844788-94846995:-|nuORF	nc|ENSG00000197249|P01009-2|SERPINA1	nc|ENSG00000197249|P01009-2|SERPINA1	MULTI-MSMS	HCT116MG_D190212_S1	1	555.8057861328125	2	555.805697	1109.59684	0.69768	0.00038777	0.046215	2.5687E-05	0.74389	0.00041346	555.805627318516	41.4	0.20815	41.4	41.237	41.445	0					5	3	2	0	0	0	0.031798	1	15603	15603		100.71	27.741	1	11678000			20247	6130	12844	12901	19448	19448					0.04642575066304744
LSITGTYDLK	10	Unmodified	_LSITGTYDLK_					0	0	0		nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1;ENST00000489769.1_1_14:94844788-94846995:-|nuORF	nc|ENSG00000197249|P01009-2|SERPINA1	nc|ENSG00000197249|P01009-2|SERPINA1	MULTI-MSMS	HCT116MG_D190212_S4	4	555.8054809570312	2	555.805697	1109.59684	0.38844	0.00021589	-0.22722	-0.00012629	0.16121	8.9604E-05	555.8050686759896	41.683	0.16176	41.306	41.252	41.413	-0.37637					13	9	2	0	0	0	0.14637	1	15287	15287		64.927	19.227	1	6557100			20248	6130	12844	12901	19449	19449					0.04642575066304744
LSITVATVEA	10	Unmodified	_LSITVATVEA_					0	0	0			REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant	REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	502.2663269042969	2	502.28714	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.724	1	41.656	41.156	42.156	-0.068199								0	0	0	0.75654	1	15774	15774		34.402	3.7652	1		+		20249	10388	12845	12902	19450	19450					0.058549035205601285
LSIVPRGHQS	10	Unmodified	_LSIVPRGHQS_					0	0	0			REV__ENST00000513640.1_1_5:137281877-137281997:-|nuORF	REV__ENST00000513640.1_1_5:137281877-137281997:-|nuORF	MSMS	HCT116MG_D190212_S3	3	547.3079223632812	2	547.309272	1092.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.947	1	27.759	27.259	28.259	-0.18847								0	0	0	0.82952	1	10093	10093		24.991	2.2547	1		+		20250	16194	12846	12903	19451	19451					0.0613935245742141
LSIWHRDTFKR	11	Unmodified	_LSIWHRDTFKR_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-4|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	HCT116MG_D190212_S3	3	729.9016723632812	2	729.90186	1457.78917	0.58021	0.00042349	-0.10176	-7.4274E-05	0.47845	0.00034922	729.9021047888384	52.639	0.7772	52.332	51.784	52.561	-0.3064					18	14	2	0	0	0	0.74191	1	19764	19764		5.7319	0.43497	1	28332000			20251	3483	12847	12904	19452	19452					0.07858335256992177
LSIYENFIP	9	Unmodified	_LSIYENFIP_					0	0	0			REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MSMS	HCT116MG_D190212_S4	4	548.6533203125	2	548.289682	1094.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.891	1	30.527	30.027	31.027	-0.36416								0	0	0	0.76669	1	11189	11189		12.532	2.4576	1		+		20252	11169	12848	12905	19453	19453					0.02131207383195033
LSKFLCKRV	9	Unmodified	_LSKFLCKRV_					0	0	0		ENST00000443070.5_1_2:74002080-74005468:-|nuORF	ENST00000443070.5_1_2:74002080-74005468:-|nuORF	ENST00000443070.5_1_2:74002080-74005468:-|nuORF	MSMS	HCT116MG_D190212_S4	4	547.3322143554688	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.618	1	56.312	55.812	56.812	-0.30626								0	0	0	0.76902	1	21229	21229		4.3292	0	1				20253	7936	12849	12906	19454	19454					0.10515245630199388
LSKLIVCFL	9	Unmodified	_LSKLIVCFL_					0	0	0		ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	MSMS	HCT116MG_D190212_S2	2	518.31494140625	2	518.317189	1034.61982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.951	1	50.772	50.272	51.272	-0.17868								0	0	0	0.76781	1	19538	19538		8.5933	0.68312	1				20254	5310	12850	12907	19455	19455					0.10389922650097105
LSKLRHVV	8	Unmodified	_LSKLRHVV_					0	0	0		DDX50|p.K339Nfs*3|2|0.28|ENSG00000107625|chr10:68914126-68914126|A/-|frameshift_variant;DDX50|p.S326Lfs*16|1|0.44|ENSG00000107625|chr10:68914086-68914086|T/-|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50	DDX50|p.K339Nfs*3|2|0.28|ENSG00000107625|chr10:68914126-68914126|A/-|frameshift_variant	DDX50|p.K339Nfs*3|2|0.28|ENSG00000107625|chr10:68914126-68914126|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	476.3068542480469	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.069	1	41.069	40.569	41.569	0								0	0	0	0.8837	1	15454	15454		2.5775	0	1				20255	657	12851	12908	19456	19456					0.12525763159317194
LSKNRKKIKKG	11	Unmodified	_LSKNRKKIKKG_					0	0	0			REV__LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant	REV__LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	650.4323120117188	2	650.432796	1298.85104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.085	1	53.786	53.286	54.286	-0.29946								0	0	0	0.96149	1	20486	20486		0.30703	0	1		+		20256	12401	12852	12909	19457	19457					0.21356686676131176
LSKRRRRPKP	10	Unmodified	_LSKRRRRPKP_					0	0	0			REV__ENST00000522332.1_1_8:22056536-22056896:+|nuORF	REV__ENST00000522332.1_1_8:22056536-22056896:+|nuORF	MSMS	HCT116MG_D190212_S2	2	647.3748779296875	2	647.420554	1292.82655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.653	1	43.575	43.075	44.075	-0.077705								0	0	0	0.96377	1	16558	16558		1.6526	0.17072	1		+		20257	16247	12853	12910	19458	19458					0.1918547131331252
LSKSKRRKKT	10	Unmodified	_LSKSKRRKKT_					0	0	0		RAD17|p.P375Tfs*2|1|0.33|ENSG00000152942|chr5:69391906-69391907|-/A|frameshift_variant	RAD17|p.P375Tfs*2|1|0.33|ENSG00000152942|chr5:69391906-69391907|-/A|frameshift_variant	RAD17|p.P375Tfs*2|1|0.33|ENSG00000152942|chr5:69391906-69391907|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	411.2699890136719	3	411.270089	1230.78844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.941	1	20.941	20.441	21.441	0								0	0	0	0.97045	1	7345	7345		0.15932	0	1				20258	9798	12854	12911	19459	19459					0.18227540607972514
LSKYPPRDS	9	Unmodified	_LSKYPPRDS_					0	0	0		ENST00000421505.1_1_1:178062135-178062847:-|nuORF	ENST00000421505.1_1_1:178062135-178062847:-|nuORF	ENST00000421505.1_1_1:178062135-178062847:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	531.7826538085938	2	531.782556	1061.55056	0.6579	0.00034986	-0.60811	-0.00032338	0.049791	2.6478E-05	531.7823290576101	27.658	0.25986	27.47	27.309	27.569	-0.18847					8	4	2	0	0	0	0.26536	1	9992	9992		34.402	0	1	7900100			20259	7789	12855	12912	19460	19460					0.022245549548870258
LSLAKKKKKK	10	Unmodified	_LSLAKKKKKK_					0	0	0		ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	MSMS	HCT116MG_D190212_S1	1	391.27984619140625	3	391.279814	1170.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.164	1	54.164	53.664	54.664	0								0	0	0	0.97116	1	20762	20762		0	0	1				20260	6726	12856	12913	19461	19461					0.23903684904257716
LSLAKKKKKK	10	Unmodified	_LSLAKKKKKK_					0	0	0		ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	MSMS	HCT116MG_D190212_S2	2	391.27972412109375	3	391.279814	1170.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.699	1	56.517	56.017	57.017	-0.18138								0	0	0	0.97116	1	21880	21880		0	0	1				20261	6726	12856	12913	19462	19462					0.23903684904257716
LSLDRGAPG	9	Unmodified	_LSLDRGAPG_					0	0	0			REV__ENST00000346348.7_1_6:86303399-86303597:-|nuORF	REV__ENST00000346348.7_1_6:86303399-86303597:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	443.2432861328125	2	443.243067	884.47158	0.048465	2.1482E-05	-0.49466	-0.00021925	-0.44619	-0.00019777	443.24317248627244	32.369	0.36484	32.09	31.89	32.254	-0.27841					13	6	3	0	0	0	0.097615	1	11872	11872		58.679	5.2748	1	3038700	+		20262	15014	12857	12914	19463	19463					0.024723277206248895
LSLDRGAPG	9	Unmodified	_LSLDRGAPG_					0	0	0			REV__ENST00000346348.7_1_6:86303399-86303597:-|nuORF	REV__ENST00000346348.7_1_6:86303399-86303597:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	443.243067	884.47158	0.048465	2.1482E-05	-0.49466	-0.00021925	-0.44619	-0.00019777	443.24317248627244	32.369	0.36484	32.09	31.89	32.254	-0.27841	0.018232	-0.00029274	NaN	58.679	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3038700	+		20263	15014	12857	12914							0.024723277206248895
LSLFALLRM	9	Unmodified	_LSLFALLRM_					0	0	0			REV__ENSG00000188770|ENST00000367222|OPTC	REV__ENSG00000188770|ENST00000367222|OPTC	MSMS	HCT116MG_D190212_S4	4	532.2876586914062	2	532.320263	1062.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.615	1	55.303	54.803	55.803	-0.312								0	0	0	0.76886	1	20829	20829		4.3292	0	1		+		20264	13971	12858	12915	19464	19464					0.09716440881629751
LSLGERIHKL	10	Unmodified	_LSLGERIHKL_					0	0	0		ENST00000493213.1_1_X:47086613-47086945:+|nuORF;ENST00000428400.5_1_X:47086613-47088270:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	ENST00000493213.1_1_X:47086613-47086945:+|nuORF	ENST00000493213.1_1_X:47086613-47086945:+|nuORF	MSMS	HCT116MG_D190212_S1	1	389.2394104003906	3	389.239907	1164.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.114	1	25.114	24.614	25.614	0								0	0	0	0.94345	1	9020	9020		6.1918	3.6934	1				20265	1830	12859	12916	19465	19465					0.12213071559699529
LSLGGARLLVP	11	Unmodified	_LSLGGARLLVP_					0	0	0			REV__ENST00000528047.5_1_8:145734716-145735997:+|nuORF	REV__ENST00000528047.5_1_8:145734716-145735997:+|nuORF	MSMS	HCT116MG_D190212_S1	1	548.3461303710938	2	548.347866	1094.68118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.56	1	53.56	53.06	54.06	0								0	0	0	0.94416	1	20515	20515		9.3831	0.78985	1		+		20266	13161	12860	12917	19466	19466					0.13762570673748087
LSLGHRRTARS	11	Unmodified	_LSLGHRRTARS_					0	0	0			REV__ENST00000261038.5_1_3:122514002-122525788:+|nuORF	REV__ENST00000261038.5_1_3:122514002-122525788:+|nuORF	MSMS	HCT116MG_D190212_S2	2	627.3632202148438	2	627.362902	1252.71125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.783	1	47.65	47.15	48.15	-0.13281								0	0	0	0.93456	1	18236	18236		14.405	6.2499	1		+		20267	14623	12861	12918	19467	19467					0.09500322391636473
LSLGRRRRRE	10	Unmodified	_LSLGRRRRRE_					0	0	0		ENST00000367568.4_1_6:144471688-144507808:+|nuORF	ENST00000367568.4_1_6:144471688-144507808:+|nuORF	ENST00000367568.4_1_6:144471688-144507808:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	650.0719604492188	2	649.897443	1297.78033	0.6416	0.00041697	-2.5898	-0.0016831	-1.9482	-0.0012662	650.3961152387034	54.731	1.0942	54.408	54.14	55.234	-0.32348					26	20	2	0	0	0	0.86339	1	20738	20738		6.7232	0.99131	1	2992500			20268	7392	12862	12919	19468	19468					0.14335406411214535
LSLHLRSNSLR	11	Unmodified	_LSLHLRSNSLR_					0	0	0		nc|ENSG00000198739|Q86VH5-2|LRRTM3;ENSG00000198739|ENST00000361320|LRRTM3	nc|ENSG00000198739|Q86VH5-2|LRRTM3	nc|ENSG00000198739|Q86VH5-2|LRRTM3	MSMS	HCT116MG_D190212_S2	2	648.3804931640625	2	648.38076	1294.74697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.089	1	44.997	44.497	45.497	-0.092472								0	0	0	0.9465	1	17138	17138		8.1555	2.4237	1				20269	6262	12863	12920	19469	19469					0.11138359848655455
LSLHMRTHTG	10	Unmodified	_LSLHMRTHTG_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536;ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant;ZNF536|p.P299Afs*74|1|0.33|ENSG00000198597|chr19:30444453-30444454|-/A|frameshift_variant	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MULTI-MSMS	HCT116MG_D190212_S2	2	384.8582763671875	3	384.869597	1151.58696	-0.1274	-4.9032E-05	-2.0502	-0.00078905	-2.1776	-0.00083808	384.8689057043525	26.589	0.15587	26.228	26.128	26.284	-0.36164					4	2	2	0	0	0	0.77749	1	9590	9590		8.4443	0	1	3259600			20270	6245	12864	12921	19470	19470					0.017231085799494394
LSLKVFIPKRY	11	Unmodified	_LSLKVFIPKRY_					0	0	0		ENST00000440735.2_2_13:111642507-111642792:+|nuORF	ENST00000440735.2_2_13:111642507-111642792:+|nuORF	ENST00000440735.2_2_13:111642507-111642792:+|nuORF	MSMS	HCT116MG_D190212_S1	1	682.4257202148438	2	682.426648	1362.83874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.666	1	41.666	41.166	42.166	0								0	0	0	0.95636	1	15695	15695		2.9952	1.5133	1				20271	7920	12865	12922	19471	19471					0.17183650213110013
LSLLILFLIPV	11	Unmodified	_LSLLILFLIPV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MSMS	HCT116MG_D190212_S2	2	620.91943359375	2	620.917593	1239.82063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.328	1	35.186	34.686	35.686	-0.14245								0	0	0	0.95954	1	13174	13174		1.3295	0.92882	1		+		20272	12183	12866	12923	19472	19472					0.21031515238405518
LSLLKTTYK	9	Unmodified	_LSLLKTTYK_					0	0	0		ENST00000264313.10_1_4:48425948-48426038:+|nuORF	ENST00000264313.10_1_4:48425948-48426038:+|nuORF	ENST00000264313.10_1_4:48425948-48426038:+|nuORF	MSMS	HCT116MG_D190212_S2	2	533.8313598632812	2	533.828975	1065.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.98	1	38.896	38.396	39.396	-0.084618								0	0	0	0.76837	1	14656	14656		10.074	1.9184	1				20273	6888	12867	12924	19473	19473					0.11320059688250694
LSLMSRICYR	10	Unmodified	_LSLMSRICYR_					0	0	0			REV__ENSG00000101230|ENST00000262487|ISM1	REV__ENSG00000101230|ENST00000262487|ISM1	MSMS	HCT116MG_D190212_S2	2	621.32861328125	2	621.328293	1240.64203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.932	1	41.864	41.364	42.364	-0.068199								0	0	0	0.82636	1	15858	15858		25.399	1.3787	1		+		20274	11117	12868	12925	19474	19474					0.03133779056224739
LSLPDSCCV	9	2 Carbamidomethyl (C)	_LSLPDSC(Carbamidomethyl (C))C(Carbamidomethyl (C))V_	LSLPDSC(1)C(1)V		LSLPDSC(57)C(57)V		0	2	0			REV__ENSG00000110066|ENST00000304363|KMT5B	REV__ENSG00000110066|ENST00000304363|KMT5B	MULTI-MSMS	HCT116MG_D190212_S1	1	525.733642578125	2	525.73336	1049.45217	0.49116	0.00025822	0.062962	3.3101E-05	0.55412	0.00029132	525.7332897749245	33.322	0.31054	33.322	33.141	33.452	0					8	5	2	0	0	0	0.1037	1	12334	12334		57.471	17.514	1	16596000	+		20275	11389	12869	12926	19475	19475	49;50				-0.07058132676820605
LSLPKVEKPKM	11	Unmodified	_LSLPKVEKPKM_					0	0	0		tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	tr|U7T3U9|U7T3U9_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00268PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	635.3728637695312	2	635.383591	1268.75263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.018	1	53.018	52.518	53.518	0								0	0	0	0.95686	1	20294	20294		2.7352	1.2533	1				20276	18610	12870	12927	19476	19476					0.1290032231609075
LSLPRRRVHWL	11	Unmodified	_LSLPRRRVHWL_					0	0	0		ENST00000342266.4_1_6:131571499-131571742:+|nuORF	ENST00000342266.4_1_6:131571499-131571742:+|nuORF	ENST00000342266.4_1_6:131571499-131571742:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	716.435546875	2	716.936037	1431.85752	0.59153	0.00042409	1.0507	0.00075325	1.6422	0.0011773	716.9368517631148	50.924	0.41334	50.924	50.781	51.194	0					11	7	2	0	0	0	0.36611	1	19440	19440		0.30703	0.03801	1	20948000			20277	7226	12871	12928	19477	19477					0.15886624627546553
LSLPVENHLYT	11	Unmodified	_LSLPVENHLYT_					0	0	0		HBEGF|p.R153H|1|0.06|ENSG00000113070|chr5:140335968-140335968|C/T|missense_variant	HBEGF|p.R153H|1|0.06|ENSG00000113070|chr5:140335968-140335968|C/T|missense_variant	HBEGF|p.R153H|1|0.06|ENSG00000113070|chr5:140335968-140335968|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	643.2998657226562	2	643.342978	1284.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.795	1	50.623	50.123	51.123	-0.1719								0	0	0	0.94943	1	19474	19474		12.241	6.5088	1				20278	9204	12872	12929	19478	19478					0.040453378777101534
LSLPYPFAS	9	Unmodified	_LSLPYPFAS_					0	0	0		ENST00000506674.1_1_4:78804483-78828134:+|nuORF;ENSG00000169288|ENST00000315567|MRPL1	ENST00000506674.1_1_4:78804483-78828134:+|nuORF	ENST00000506674.1_1_4:78804483-78828134:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	994.5457763671875	1	994.52441	993.517133	0.74056	0.00073651	-0.4763	-0.00047369	0.26427	0.00026282	994.5239024801175	57.204	0.15605	57.025	56.895	57.051	-0.17904					4	2	2	0	0	0	0.39063	1	22032	22032		23.148	0	1	4830200			20279	5064	12873	12930	19479	19479					0.020115531829901556
LSLRTSRK	8	Unmodified	_LSLRTSRK_					0	0	0			REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	HCT116MG_D190212_S2	2	960.59765625	1	960.594889	959.587613	0.601	0.00057732	0.47897	0.0004601	1.08	0.0010374	960.5952399281493	50.995	0.31086	50.816	50.655	50.966	-0.17868					14	5	3	0	0	0	0.60054	1	19552	19552		32.305	1.6689	1	55908000	+		20280	17141	12874	12931	19480	19480					0.10620271291338668
LSLRTSRK	8	Unmodified	_LSLRTSRK_					0	0	0			REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	960.594889	959.587613	0.601	0.00057732	0.47897	0.0004601	1.08	0.0010374	960.5952399281493	50.995	0.31086	50.816	50.655	50.966	-0.17868	0.030959	0.00037002	NaN	32.305	14	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55908000	+		20281	17141	12874	12931							0.10620271291338668
LSLTTPRPPSI	11	Unmodified	_LSLTTPRPPSI_					0	0	0			REV__EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant	REV__EIF2AK3|p.D965Gfs*7|1|0.04|ENSG00000172071|chr2:88570965-88570966|-/GTTTTCATTAAAATAC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	591.345703125	2	591.348063	1180.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.964	1	47.964	47.464	48.464	0								0	0	0	0.95273	1	18238	18238		4.897	1.3005	1		+		20282	10446	12875	12932	19481	19481					0.09845945602955908
LSLTVDNLSLK	11	Unmodified	_LSLTVDNLSLK_					0	0	0			REV__ENSG00000181544|ENST00000650831|FANCB	REV__ENSG00000181544|ENST00000650831|FANCB	MULTI-SECPEP	HCT116MG_D190212_S3	3	601.8248291015625	2	601.853178	1201.6918	0.65671	0.00039524	-0.78853	-0.00047458	-0.13182	-7.9337E-05	601.8525868152879	43.881	0.26082	43.575	43.448	43.709	-0.30616					10	4	3	0	0	0	0.33835	1	16355	16355		30.703	3.4802	1	10589000	+		20283	13693	12876	12933	19482	19482					0.09902508537516042
LSMDLPILDI	10	Unmodified	_LSMDLPILDI_					0	0	0		ENST00000420967.5_1_12:118454632-118456902:+|nuORF	ENST00000420967.5_1_12:118454632-118456902:+|nuORF	ENST00000420967.5_1_12:118454632-118456902:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	565.3145751953125	2	565.3123	1128.61005	0.43467	0.00024572	2.7497	0.0015544	3.1843	0.0018001	565.3140292864991	45.637	0.31441	45.637	45.451	45.765	0					9	5	3	0	0	0	0.58749	1	17325	17325		29.082	3.0609	1	8793100			20284	7785	12877	12934	19483	19483					0.05088689854073891
LSMNRQKEV	9	Unmodified	_LSMNRQKEV_					0	0	0			REV__ENST00000536597.2_1_19:53313225-53313717:+|nuORF	REV__ENST00000536597.2_1_19:53313225-53313717:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	552.2420043945312	2	552.79514	1103.57573	0.48918	0.00027042	-1.4426	-0.00079747	-0.95344	-0.00052706	552.7938122351784	22.435	0.25889	22.05	21.947	22.206	-0.3852					5	4	2	0	0	0	0.18552	1	8009	8009		30.637	0	1	3885700	+		20285	16344	12878	12935	19484	19484					0.028082864858333778
LSMRRRRRR	9	Unmodified	_LSMRRRRRR_					0	0	0			REV__ENST00000367537.7_2_1:183441704-183471394:+|nuORF	REV__ENST00000367537.7_2_1:183441704-183471394:+|nuORF	MSMS	HCT116MG_D190212_S3	3	643.8919677734375	2	643.89418	1285.77381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.702	1	46.388	45.888	46.888	-0.31405								0	0	0	0.76834	1	17518	17518		6.7232	1.4263	1		+		20286	15123	12879	12936	19485	19485					0.14235189978853668
LSNIKKVATRR	11	Unmodified	_LSNIKKVATRR_					0	0	0			REV__RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant	REV__RNF139|p.R559Lfs*60|1|0.18|ENSG00000170881|chr8:124487325-124487325|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	429.0887145996094	3	429.273611	1284.799	0.07104	3.0496E-05	-1.6516	-0.00070898	-1.5806	-0.00067849	429.2727577201211	55.498	0.46169	55.498	55.298	55.76	0					12	8	2	0	0	0	0.36622	1	21280	21280		0.064406	0	1	11404000	+		20287	13321	12880	12937	19486	19486					0.16799523262397997
LSNNALLL	8	Unmodified	_LSNNALLL_					0	0	0			REV__ENSG00000169704|ENST00000307395|GP9	REV__ENSG00000169704|ENST00000307395|GP9	MSMS	HCT116MG_D190212_S4	4	429.2583923339844	2	429.258185	856.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.12	1	44.747	44.247	45.247	-0.37266								0	0	0	0.8837	1	16633	16633		2.0598	0	1		+		20288	13260	12881	12938	19487	19487					0.0678268638581585
LSPDAYRF	8	Unmodified	_LSPDAYRF_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MSMS	HCT116MG_D190212_S2	2	484.7701110839844	2	484.745442	967.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.479	1	27.137	26.637	27.637	-0.34201								0	0	0	0.75335	1	9983	9983		26.341	0	1				20289	2804	12882	12939	19488	19488					-0.008707881366262882
LSPDFYQPGP	10	Unmodified	_LSPDFYQPGP_					0	0	0		ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	MSMS	HCT116MG_D190212_S2	2	560.707275390625	2	560.769114	1119.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.183	1	26.831	26.331	27.331	-0.35254								0	0	0	0.84701	1	9863	9863		22.736	0.98964	1				20290	1929	12883	12940	19489	19489					-0.0313055365627406
LSPELLHIKPY	11	Unmodified	_LSPELLHIKPY_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MSMS	HCT116MG_D190212_S2	2	655.3821411132812	2	655.379363	1308.74417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.851	1	54.663	54.163	55.163	-0.18797								0	0	0	0.95366	1	21128	21128		5.2969	1.7004	1				20291	3058	12884	12941	19490	19490					0.10215091671125265
LSPLGEEMR	9	Oxidation (M)	_LSPLGEEM(Oxidation (M))R_		LSPLGEEM(1)R		LSPLGEEM(59)R	0	0	1		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S1	1	524.2604370117188	2	524.260599	1046.50665	0.59863	0.00031384	0.25218	0.00013221	0.85081	0.00044605	524.2605422458812	29.065	0.8921	29.065	28.429	29.321	0					17	16	2	0	0	0	0.094138	1	10626	10626		59.368	21.193	1	5152500			20292	2597	12885	12942	19491	19491		52			-0.014747975337513708
LSPLGEEMR	9	Oxidation (M)	_LSPLGEEM(Oxidation (M))R_		LSPLGEEM(1)R		LSPLGEEM(83)R	0	0	1		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S4	4	524.260498046875	2	524.260599	1046.50665	0.34726	0.00018206	0.19728	0.00010343	0.54455	0.00028549	524.260369028681	29.664	0.46804	29.315	29.085	29.553	-0.34921					19	8	3	0	0	0	0.032914	1	10728	10728		83.429	20.856	1	7683200			20293	2597	12885	12942	19492	19492		52			-0.014747975337513708
LSPPGSPRRD	10	Unmodified	_LSPPGSPRRD_					0	0	0		ENST00000455890.2_1_20:21074459-21082047:-|nuORF	ENST00000455890.2_1_20:21074459-21082047:-|nuORF	ENST00000455890.2_1_20:21074459-21082047:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	361.1963195800781	3	361.196478	1080.56761	-0.29741	-0.00010742	0.21734	7.8501E-05	-0.080076	-2.8923E-05	361.19646109926924	15.684	0.26113	15.35	15.219	15.48	-0.33451					6	4	2	0	0	0	0.86862	1	5252	5252		3.3196	0	1	4322700			20294	8021	12886	12943	19493	19493					0.030544755607252227
LSPRAHAR	8	Unmodified	_LSPRAHAR_					0	0	0			REV__ENSG00000161180|ENST00000292779|CCDC116	REV__ENSG00000161180|ENST00000292779|CCDC116	MSMS	HCT116MG_D190212_S4	4	454.7479248046875	2	454.264668	906.514782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.723	1	57.429	56.929	57.929	-0.29465								0	0	0	0.8837	1	21675	21675		4.756	1.8668	1		+		20295	12852	12887	12944	19494	19494					0.05778562288548983
LSPRGHCPP	9	Unmodified	_LSPRGHCPP_					0	0	0		ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;BCL9L|p.P894Lfs*17|1|0.29|ENSG00000186174|chr11:118901062-118901062|G/-|frameshift_variant;nc|ENSG00000186174|Q86UU0-3|BCL9L;BCL9L|p.P1355Lfs*6|1|0.23|ENSG00000186174|chr11:118898851-118898851|G/-|frameshift_variant;BCL9L|p.P1249Lfs*32|1|0.58|ENSG00000186174|chr11:118899171-118899171|C/-|frameshift_variant;BCL9L|p.P1198Lfs*5|3|0.34|ENSG00000186174|chr11:118899327-118899327|C/-|frameshift_variant;BCL9L|p.P1127Hfs*21|1|0.43|ENSG00000186174|chr11:118899943-118899943|G/-|frameshift_variant;BCL9L|p.V101Cfs*11|1|0.39|ENSG00000186174|chr11:118908381-118908381|C/-|frameshift_variant;ENST00000527266.1_1_11:118773580-118779321:-|nuORF;BCL9L|p.P483Rfs*19|1|0.35|ENSG00000186174|chr11:118902295-118902295|G/-|frameshift_variant;BCL9L|p.G442Afs*21|2|0.19|ENSG00000186174|chr11:118902418-118902418|C/-|frameshift_variant;BCL9L|p.P449Lfs*14|1|0.26|ENSG00000186174|chr11:118902397-118902397|G/-|frameshift_variant;BCL9L|p.Q452Sfs*11|3|0.43|ENSG00000186174|chr11:118902389-118902389|G/-|frameshift_variant;BCL9L|p.E397Rfs*22|1|0.71|ENSG00000186174|chr11:118902554-118902555|-/T|frameshift_variant;BCL9L|p.G230Afs*62|2|0.25|ENSG00000186174|chr11:118903296-118903296|C/-|frameshift_variant;BCL9L|p.P288Rfs*4|1|0.38|ENSG00000186174|chr11:118902880-118902880|G/-|frameshift_variant;BCL9L|p.G481Afs*21|1|0.4|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant	ENSG00000186174|ENST00000683865|BCL9L	ENSG00000186174|ENST00000683865|BCL9L	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7406311035156	2	482.245086	962.47562	0.18872	9.1012E-05	-0.55149	-0.00026595	-0.36276	-0.00017494	482.2443702790213	27.95	0.25731	27.608	27.449	27.706	-0.34201					9	4	3	0	0	0	0.41514	1	10136	10136		11.64	0	1	10850000			20296	5871	12888	12945	19495	19495					-0.007119060573245406
LSPTERHQ	8	Unmodified	_LSPTERHQ_					0	0	0			REV__AluSc_dup32446|chr19:41729277-41729501:+|19.17342533549345|0.0040187158861641|12.22|474.0|6|3|sense	REV__AluSc_dup32446|chr19:41729277-41729501:+|19.17342533549345|0.0040187158861641|12.22|474.0|6|3|sense	MULTI-SECPEP	HCT116MG_D190212_S4	4	484.2093505859375	2	484.251423	966.488293	0.079492	3.8494E-05	-0.033231	-1.6092E-05	0.046261	2.2402E-05	484.25128784758095	20.194	0.2078	19.993	19.833	20.04	-0.20133					5	3	2	0	0	0	0.29044	1	6849	6849		9.3831	0.63772	1	574880	+		20297	9923	12889	12946	19496	19496					0.003708286065716493
LSPTSSEAEF	10	Unmodified	_LSPTSSEAEF_					0	0	0		nc|ENSG00000164830|Q8N573-3|OXR1;OXR1|p.E529Kfs*13|1|0.09|ENSG00000164830|chr8:106707098-106707098|A/-|frameshift_variant;nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1	nc|ENSG00000164830|Q8N573-3|OXR1	nc|ENSG00000164830|Q8N573-3|OXR1	MULTI-SECPEP	HCT116MG_D190212_S2	2	534.2905883789062	2	534.248212	1066.48187	0.45344	0.00024225	0.46334	0.00024754	0.91678	0.00048979	534.2484487426627	46.075	0.41091	45.973	45.761	46.172	-0.1014					11	7	2	0	0	0	0.28496	1	17511	17511		9.3831	0	1	18961000			20298	4724	12890	12947	19497	19497					-0.04871154135480538
LSPVVHHL	8	Unmodified	_LSPVVHHL_					0	0	0			REV__ENST00000552502.1_1_12:48112970-48114117:+|nuORF	REV__ENST00000552502.1_1_12:48112970-48114117:+|nuORF	MSMS	HCT116MG_D190212_S1	1	451.2663879394531	2	451.266345	900.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.231	1	21.231	20.731	21.731	0								0	0	0	0.8837	1	7459	7459		10.183	0.83596	1		+		20299	16432	12891	12948	19498	19498					0.06389812342570167
LSQDKIQKKLQ	11	Unmodified	_LSQDKIQKKLQ_					0	0	0			REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	REV__CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	442.9320983886719	3	443.601393	1327.78235	0.11996	5.3217E-05	-0.81299	-0.00036064	-0.69302	-0.00030743	443.60102040521025	54.056	0.25725	53.867	53.739	53.996	-0.1894					6	4	2	0	0	0	0.36563	1	20795	20795		4.4062	1.9714	1	6862600	+		20300	10150	12892	12949	19499	19499					0.13156977585799723
LSQEAGLLAR	10	Unmodified	_LSQEAGLLAR_					0	0	0			REV__ENST00000378567.7_1_1:2116514-2116796:+|nuORF	REV__ENST00000378567.7_1_1:2116514-2116796:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.3037109375	2	529.303655	1056.59276	0.56267	0.00029782	-0.26946	-0.00014263	0.2932	0.00015519	529.303581304635	26.326	0.20846	26.177	26.046	26.255	-0.14924					5	3	2	0	0	0	0.6277	1	9467	9467		26.268	2.4784	1	6238500	+		20301	15248	12893	12950	19500	19500					0.0667253036326656
LSQKLTYLK	9	Unmodified	_LSQKLTYLK_					0	0	0			REV__ENSG00000116918|ENST00000366639|TSNAX	REV__ENSG00000116918|ENST00000366639|TSNAX	MSMS	HCT116MG_D190212_S4	4	547.3323364257812	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.661	1	51.311	50.811	51.811	-0.35028								0	0	0	0.76759	1	19234	19234		9.3831	0.63772	1		+		20302	11601	12894	12951	19501	19501					0.11167462062530831
LSQKLTYLK	9	Unmodified	_LSQKLTYLK_					0	0	0			REV__ENSG00000116918|ENST00000366639|TSNAX	REV__ENSG00000116918|ENST00000366639|TSNAX	MSMS	HCT116MG_D190212_S4	4	547.3322143554688	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.214	1	52.879	52.379	53.379	-0.33473								0	0	0	0.7663	1	19861	19861		13.906	0.86358	1		+		20303	11601	12894	12951	19502	19502					0.11167462062530831
LSQMKKLLKER	11	Unmodified	_LSQMKKLLKER_					0	0	0			REV__ENSG00000233802|ENST00000623787|TRIM49D2	REV__ENSG00000233802|ENST00000623787|TRIM49D2	MSMS	HCT116MG_D190212_S3	3	687.2565307617188	2	687.418497	1372.82244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.022	1	50.708	50.208	51.208	-0.31381								0	0	0	0.95196	1	19255	19255		5.2969	0.39987	1		+		20304	14298	12895	12952	19503	19503					0.1509420098470855
LSQPDQVT	8	Unmodified	_LSQPDQVT_					0	0	0		ENSG00000182545|ENST00000430083|RNASE10;nc|ENSG00000182545|Q5GAN6-2|RNASE10	ENSG00000182545|ENST00000430083|RNASE10	ENSG00000182545|ENST00000430083|RNASE10	MSMS	HCT116MG_D190212_S4	4	444.22705078125	2	444.227082	886.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.09	1	28.749	28.249	29.249	-0.34059								0	0	0	0.8837	1	10490	10490		4.3292	0	1				20305	5673	12896	12953	19504	19504					-0.008150847531851468
LSQPGPGH	8	Unmodified	_LSQPGPGH_					0	0	0			REV__ENST00000360089.8_1_1:158045972-158047847:+|nuORF	REV__ENST00000360089.8_1_1:158045972-158047847:+|nuORF	MSMS	HCT116MG_D190212_S2	2	396.7032470703125	2	396.703577	791.392602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.716	1	25.347	24.847	25.847	-0.36914								0	0	0	0.85589	1	9273	9273		18.135	0	1		+		20306	15080	12897	12954	19505	19505					-0.011438995136813901
LSQPQRLV	8	Unmodified	_LSQPQRLV_					0	0	0		ENST00000563885.5_1_16:67862648-67864187:-|nuORF	ENST00000563885.5_1_16:67862648-67864187:-|nuORF	ENST00000563885.5_1_16:67862648-67864187:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	470.782470703125	2	470.782359	939.550165	0.6058	0.0002852	0.11482	5.4054E-05	0.72061	0.00033925	470.7822141139475	37.43	0.24969	37.43	37.249	37.499	0					7	4	2	0	0	0	0.60054	1	13977	13977		32.305	3.2239	1	5443400			20307	8838	12898	12955	19506	19506					0.0779718002570462
LSQPTKLLPP	10	Unmodified	_LSQPTKLLPP_					0	0	0			REV__POM121L2|p.S954Pfs*?|1|0.12|ENSG00000158553|chr6:27309311-27309311|A/-|frameshift_variant	REV__POM121L2|p.S954Pfs*?|1|0.12|ENSG00000158553|chr6:27309311-27309311|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	547.3325805664062	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.947	1	57.673	57.173	58.173	-0.27434								0	0	0	0.94339	1	22033	22033		6.2058	0	1		+		20308	17434	12899	12956	19507	19507					0.11167462062553568
LSQQFDSTM	9	Unmodified	_LSQQFDSTM_					0	0	0			REV__ENSG00000213047|ENST00000620048|DENND1B	REV__ENSG00000213047|ENST00000620048|DENND1B	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.281982421875	2	528.736957	1055.45936	0.39206	0.00020729	-0.25934	-0.00013712	0.13271	7.017E-05	528.7367072193456	45.426	0.25767	45.334	45.205	45.462	-0.092472					5	4	2	0	0	0	0.21227	1	17324	17324		15.847	1.2655	1	13298000	+		20309	14251	12900	12957	19508	19508					-0.06615076804746423
LSQQLMATIG	10	Unmodified	_LSQQLMATIG_					0	0	0			REV__nc|ENSG00000135775|Q14746-2|COG2	REV__nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	HCT116MG_D190212_S3	3	531.7886352539062	2	531.286617	1060.55868	0.37395	0.00019868	0.1906	0.00010126	0.56456	0.00029994	531.2866146498966	38.502	0.51931	38.201	37.937	38.456	-0.30137					11	9	2	0	0	0	0.76143	1	14237	14237		15.248	1.3424	1	5260700	+		20310	12106	12901	12958	19509	19509					0.03082365880004545
LSQSKLANLL	10	Unmodified	_LSQSKLANLL_					0	0	0			REV__ENST00000508066.1_1_4:36162071-36231213:-|nuORF	REV__ENST00000508066.1_1_4:36162071-36231213:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	543.8302001953125	2	543.829506	1085.64446	0.445	0.000242	0.13582	7.3863E-05	0.58082	0.00031587	543.8295527380704	43.394	0.2593	43.394	43.264	43.524	0					9	4	3	0	0	0	0.87405	1	16442	16442		4.897	0.36815	1	36535000	+		20311	9970	12902	12959	19510	19510					0.10506274057183873
LSRAEWGV	8	Unmodified	_LSRAEWGV_					0	0	0		ENST00000541898.5_3_19:19144688-19153597:+|nuORF	ENST00000541898.5_3_19:19144688-19153597:+|nuORF	ENST00000541898.5_3_19:19144688-19153597:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2457580566406	2	459.245609	916.476666	0.34224	0.00015717	-0.1897	-8.7117E-05	0.15255	7.0056E-05	459.245578360324	40.687	0.36029	40.618	40.365	40.725	-0.069626					9	6	2	0	0	0	0.44484	1	15371	15371		46.021	6.0713	1	20895000			20312	8696	12903	12960	19511	19511					0.015086315832263608
LSRAMEKSVP	10	Unmodified	_LSRAMEKSVP_					0	0	0		ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant;ENSG00000184677|ENST00000375647|ZBTB40	ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant	ZBTB40|p.K799Rfs*9|1|0.28|ENSG00000184677|chr1:22512063-22512063|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	559.3030395507812	2	559.305341	1116.59613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.065	1	30.065	29.565	30.565	0								0	0	0	0.91971	1	11013	11013		11.495	0	1				20313	5779	12904	12961	19512	19512					0.04249457145624547
LSRDHQIP	8	Unmodified	_LSRDHQIP_					0	0	0		nc|ENSG00000174807|Q9HCU0-2|CD248;CD248|p.E673Gfs*12|1|0.27|ENSG00000174807|chr11:66315010-66315011|-/C|frameshift_variant;ENSG00000174807|ENST00000311330|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	MSMS	HCT116MG_D190212_S3	3	483.2635803222656	2	483.261791	964.509028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.25	1	30.989	30.489	31.489	-0.26071								0	0	0	0.8837	1	11410	11410		14.582	2.0501	1				20314	372	12905	12962	19513	19513					0.025354189862241583
LSRDLRRRVWA	11	Unmodified	_LSRDLRRRVWA_					0	0	0		ENST00000357360.4_1_X:153707301-153707586:-|nuORF	ENST00000357360.4_1_X:153707301-153707586:-|nuORF	ENST00000357360.4_1_X:153707301-153707586:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	714.42041015625	2	714.420751	1426.82695	0.60567	0.0004327	-1.5684	-0.0011205	-0.96271	-0.00068778	714.4195496008256	51.113	0.82576	51.113	50.626	51.451	0					21	15	2	0	0	0	0.74191	1	19512	19512		1.3295	0	1	10745000			20315	7309	12906	12963	19514	19514					0.13060846242478874
LSREGQPIP	9	Unmodified	_LSREGQPIP_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MSMS	HCT116MG_D190212_S3	3	498.7757568359375	2	498.777274	995.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.363	1	35.063	34.563	35.563	-0.29922								0	0	0	0.74436	1	13050	13050		16.942	4.4107	1				20316	6413	12907	12964	19515	19515					0.04204572300466225
LSREPHLAS	9	Unmodified	_LSREPHLAS_					0	0	0		NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1;nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;NAALADL1|p.T687Rfs*4|1|0.25|ENSG00000168060|chr11:65045434-65045434|G/-|frameshift_variant;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant	NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	505.274658203125	2	505.274898	1008.53524	0.15307	7.7344E-05	-0.10393	-5.2511E-05	0.049146	2.4832E-05	505.27489130947845	34.614	0.45989	34.229	33.88	34.34	-0.38558					13	8	2	0	0	0	0.51829	1	12649	12649		15.847	1.0089	1	3626100			20317	4979	12908	12965	19516	19516					0.031316881577026834
LSREPHLAS	9	Unmodified	_LSREPHLAS_					0	0	0		NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1;nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;NAALADL1|p.T687Rfs*4|1|0.25|ENSG00000168060|chr11:65045434-65045434|G/-|frameshift_variant;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant	NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	505.274898	1008.53524	0.25572	0.00012921	-0.41637	-0.00021038	-0.16065	-8.1172E-05	505.2747090085392	34.428	0.36364	34.134	33.923	34.287	-0.29419	-0.047596	-0.00022537	NaN	15.847	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4769700			20318	4979	12908	12965							0.031316881577026834
LSREPHLAS	9	Unmodified	_LSREPHLAS_					0	0	0		NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1;nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;NAALADL1|p.T687Rfs*4|1|0.25|ENSG00000168060|chr11:65045434-65045434|G/-|frameshift_variant;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant	NAALADL1|p.A200Pfs*4|1|0.23|ENSG00000168060|chr11:65057376-65057376|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	505.274898	1008.53524	0.15307	7.7344E-05	-0.10393	-5.2511E-05	0.049146	2.4832E-05	505.27489130947845	34.614	0.45989	34.229	33.88	34.34	-0.38558	0.047596	9.037E-05	NaN	15.847	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3626100			20319	4979	12908	12965							0.031316881577026834
LSRGPSPGPG	10	Unmodified	_LSRGPSPGPG_					0	0	0		ENSG00000158473|ENST00000674085|CD1D	ENSG00000158473|ENST00000674085|CD1D	ENSG00000158473|ENST00000674085|CD1D	MULTI-MSMS	HCT116MG_D190212_S4	4	462.74822998046875	2	462.748516	923.482479	0.022687	1.0498E-05	0.010134	4.6896E-06	0.032821	1.5188E-05	462.74848521261936	19.533	0.92599	19.342	19.072	19.998	-0.19145					37	17	3	0	0	0	0.69918	1	6858	6858		20.454	1.1966	1	6515000			20320	4374	12909	12966	19517	19517					0.017677300949117125
LSRHLHLL	8	Unmodified	_LSRHLHLL_					0	0	0		ENSG00000179055|ENST00000641530|OR13D1;nc|ENSG00000179055|Q8NGV5|OR13D1	ENSG00000179055|ENST00000641530|OR13D1	ENSG00000179055|ENST00000641530|OR13D1	MSMS	HCT116MG_D190212_S1	1	494.8055725097656	2	494.806168	987.597784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.826	1	55.826	55.326	56.326	0								0	0	0	0.8837	1	21447	21447		8.5933	0.68312	1				20321	5533	12910	12967	19518	19518					0.10348879016555657
LSRKGVLL	8	Unmodified	_LSRKGVLL_					0	0	0			REV__ENSG00000159961|ENST00000641141|OR3A3	REV__ENSG00000159961|ENST00000641141|OR3A3	MULTI-MSMS	HCT116MG_D190212_S2	2	443.2977294921875	2	443.297645	884.580737	0.31163	0.00013814	-0.039321	-1.7431E-05	0.2723	0.00012071	443.297515947705	39.087	0.30972	39.005	38.859	39.169	-0.082504					8	5	2	0	0	0	0.34844	1	14722	14722		54.774	3.9185	1	24121000	+		20322	12816	12911	12968	19519	19519					0.13382958410761603
LSRKRIKKICF	11	Unmodified	_LSRKRIKKICF_					0	0	0			REV__ENST00000367142.4_1_1:205682466-205682574:-|nuORF	REV__ENST00000367142.4_1_1:205682466-205682574:-|nuORF	MSMS	HCT116MG_D190212_S2	2	696.4381103515625	2	696.437024	1390.85949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.618	1	51.434	50.934	51.934	-0.18369								0	0	0	0.95954	1	19809	19809		1.3295	0	1		+		20323	15113	12912	12969	19520	19520					0.17969917321147477
LSRKVKEIIKL	11	Unmodified	_LSRKVKEIIKL_					0	0	0		tr|U7T5D1|U7T5D1_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00021PE=3SV=1	tr|U7T5D1|U7T5D1_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00021PE=3SV=1	tr|U7T5D1|U7T5D1_FUSNUP-typeconjugativetransferATPaseTrbBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00021PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	663.9427490234375	2	663.945205	1325.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.494	1	47.178	46.678	47.678	-0.31525								0	0	0	0.95636	1	17837	17837		2.9952	0.49676	1				20324	18627	12913	12970	19521	19521					0.22595321758876707
LSRLGSVAKD	10	Unmodified	_LSRLGSVAKD_					0	0	0			REV__ENSG00000130427|ENST00000252723|EPO	REV__ENSG00000130427|ENST00000252723|EPO	MULTI-MSMS	HCT116MG_D190212_S2	2	523.0135498046875	2	523.303655	1044.59276	0.61928	0.00032407	-0.19256	-0.00010077	0.42672	0.00022331	523.3034198149621	47.329	1.5901	47.207	46.769	48.36	-0.12175					66	30	3	0	0	0	0.8392	1	18507	18507		8.7454	0.15213	1	63378000	+		20325	11921	12914	12971	19522	19522					0.07224530363282611
LSRMLSIR	8	Unmodified	_LSRMLSIR_					0	0	0		DCAF12L1|p.L298M|1|0.22|ENSG00000198889|chrX:126551717-126551717|G/T|missense_variant	DCAF12L1|p.L298M|1|0.22|ENSG00000198889|chrX:126551717-126551717|G/T|missense_variant	DCAF12L1|p.L298M|1|0.22|ENSG00000198889|chrX:126551717-126551717|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	487.7909240722656	2	488.292037	974.56952	0.37798	0.00018456	0.73592	0.00035934	1.1139	0.0005439	488.29238800328966	46.725	0.3111	46.725	46.492	46.803	0					12	5	3	0	0	0	0.32902	1	17641	17641		1.6526	0	1	18319000			20326	643	12915	12972	19523	19523					0.08121813044976989
LSRPTMLGEA	10	Unmodified	_LSRPTMLGEA_					0	0	0		ENST00000270357.9_2_2:241517616-241518690:+|nuORF	ENST00000270357.9_2_2:241517616-241518690:+|nuORF	ENST00000270357.9_2_2:241517616-241518690:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7763671875	2	537.784241	1073.55393	0.35595	0.00019143	0.044232	2.3788E-05	0.40018	0.00021521	537.784327857234	21.89	0.31254	21.505	21.323	21.635	-0.38503					14	5	4	0	0	0	0.8224	1	7655	7655		10.151	10.151	1	51328000			20327	6919	12916	12973	19524	19524					0.020094817372637408
LSRRKRRRKRR	11	Unmodified	_LSRRKRRRKRR_					0	0	0			REV__nc|ENSG00000213471|A6NNM8-2|TTLL13	REV__nc|ENSG00000213471|A6NNM8-2|TTLL13	MSMS	HCT116MG_D190212_S1	1	784.5181884765625	2	784.519457	1567.02436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.491	1	50.491	49.991	50.991	0								0	0	0	0.96157	1	19267	19267		0.26902	0.26902	1		+		20328	14254	12917	12974	19525	19525					0.2635291029578184
LSRRKRSPRPV	11	Unmodified	_LSRRKRSPRPV_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	MSMS	HCT116MG_D190212_S1	1	676.0659790039062	2	676.423294	1350.83203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.533	1	44.533	44.033	45.033	0								0	0	0	0.95343	1	16850	16850		4.5289	1.2476	1		+		20329	17212	12918	12975	19526	19526					0.17065150105099747
LSRRLMWWLTY	11	Unmodified	_LSRRLMWWLTY_					0	0	0			REV__ENSG00000136802|ENST00000372600|LRRC8A	REV__ENSG00000136802|ENST00000372600|LRRC8A	MSMS	HCT116MG_D190212_S1	1	762.7452392578125	2	762.910839	1523.80712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.353	1	40.353	39.853	40.853	0								0	0	0	0.9598	1	15165	15165		1.1933	0	1		+		20330	12141	12919	12976	19527	19527					0.06617334187558299
LSRRPKPTRT	10	Unmodified	_LSRRPKPTRT_					0	0	0			REV__ENSG00000237452|ENST00000457052|MEIOSIN	REV__ENSG00000237452|ENST00000457052|MEIOSIN	MSMS	HCT116MG_D190212_S1	1	606.3693237304688	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.481	1	44.481	43.981	44.981	0								0	0	0	0.95507	1	16829	16829		3.5965	0	1		+		20331	14340	12920	12977	19528	19528					0.12890394539772387
LSRRRRNKR	9	Unmodified	_LSRRRRNKR_					0	0	0		ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	MULTI-SECPEP	HCT116MG_D190212_S3	3	414.3060302734375	3	414.597311	1240.7701	0.11075	4.5916E-05	0.64086	0.0002657	0.75161	0.00031161	414.5976210146056	55.584	0.16577	55.296	55.192	55.358	-0.28773					4	2	2	0	0	0	0.27067	1	21048	21048		0.23584	0	1	1394000			20332	2919	12921	12978	19529	19529					0.15934843476634342
LSSAQNTDDLI	11	Unmodified	_LSSAQNTDDLI_					0	0	0		ENST00000559126.5_1_15:85197121-85197442:-|nuORF	ENST00000559126.5_1_15:85197121-85197442:-|nuORF	ENST00000559126.5_1_15:85197121-85197442:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	392.8633117675781	3	392.862942	1175.567	-0.074792	-2.9383E-05	1.1213	0.0004405	1.0465	0.00041112	393.1977423355712	19.324	0.31262	19.384	19.281	19.594	0.05983					6	5	2	0	0	0	0.74191	1	6668	6668		2.2527	0.16672	1	1970900			20333	8807	12922	12979	19530	19530					-0.013764086696710365
LSSCDRVTFRM	11	Unmodified	_LSSCDRVTFRM_					0	0	0			REV__nc|ENSG00000154928|P54762-6|EPHB1	REV__nc|ENSG00000154928|P54762-6|EPHB1	MULTI-MSMS	HCT116MG_D190212_S1	1	657.8186645507812	2	657.818289	1313.62203	0.93941	0.00061796	-0.97312	-0.00064014	-0.033707	-2.2173E-05	657.8176324151103	28.294	0.26442	28.294	28.164	28.429	0					11	4	3	0	0	0	0.24477	1	10308	10308		70.332	0	1	33827000	+		20334	17168	12923	12980	19531	19531					-0.02224016674426821
LSSFHGFLVA	10	Unmodified	_LSSFHGFLVA_					0	0	0		ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	MSMS	HCT116MG_D190212_S2	2	539.2882080078125	2	539.290017	1076.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.064	1	38.98	38.48	39.48	-0.084618								0	0	0	0.82636	1	14691	14691		25.399	3.6527	1				20335	1155	12924	12981	19532	19532					0.030260468229016624
LSSFPWVNI	9	Unmodified	_LSSFPWVNI_					0	0	0			REV__OR4L1|p.Y258N|1|0.41|ENSG00000176246|chr14:20060816-20060816|T/A|missense_variant	REV__OR4L1|p.Y258N|1|0.41|ENSG00000176246|chr14:20060816-20060816|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	531.8162841796875	2	531.784567	1061.55458	0.44884	0.00023868	-3.0601	-0.0016273	-2.6113	-0.0013886	531.782595261104	45.853	0.25611	45.752	45.607	45.863	-0.1014					6	4	2	0	0	0	0.076938	1	17473	17473		53.833	8.1332	1	11514000	+		20336	17370	12925	12982	19533	19533					0.026266444486054752
LSSHDQSFY	9	Unmodified	_LSSHDQSFY_					0	0	0		ENST00000505150.5_1_4:169411574-169413987:-|nuORF	ENST00000505150.5_1_4:169411574-169413987:-|nuORF	ENST00000505150.5_1_4:169411574-169413987:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	542.2408447265625	2	542.240721	1082.46689	0.33957	0.00018413	0.30337	0.0001645	0.64294	0.00034863	542.2407053079853	32.317	0.20809	32.317	32.17	32.378	0					6	3	2	0	0	0	0.19461	1	11943	11943		41.84	11.203	1	4151300			20337	8448	12926	12983	19534	19534					-0.07104601212813577
LSSHDQSFY	9	Unmodified	_LSSHDQSFY_					0	0	0		ENST00000505150.5_1_4:169411574-169413987:-|nuORF	ENST00000505150.5_1_4:169411574-169413987:-|nuORF	ENST00000505150.5_1_4:169411574-169413987:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	542.240721	1082.46689	0.4459	0.00024179	-1.1643	-0.00063132	-0.71837	-0.00038953	542.240751866404	32.61	0.31302	32.397	32.271	32.584	-0.21321	0.039986	-0.0014265	NaN	41.84	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10867000			20338	8448	12926	12983							-0.07104601212813577
LSSKTSDP	8	Unmodified	_LSSKTSDP_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	HCT116MG_D190212_S1	1	418.3398132324219	2	417.713808	833.413062	0.023956	1.0007E-05	-0.04329	-1.8083E-05	-0.019334	-8.0761E-06	417.7138501476067	16.773	0.1561	16.773	16.681	16.837	0					4	2	2	0	0	0	0.31507	1	5690	5690		2.3027	0	1	2001600	+		20339	13601	12927	12984	19535	19535					-0.010307736445156479
LSSLPTQMDY	10	Unmodified	_LSSLPTQMDY_					0	0	0		SPCS1|p.S31Ffs*13|1|0.35|ENSG00000114902|chr3:52706692-52706693|-/T|frameshift_variant;ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	SPCS1|p.S31Ffs*13|1|0.35|ENSG00000114902|chr3:52706692-52706693|-/T|frameshift_variant	SPCS1|p.S31Ffs*13|1|0.35|ENSG00000114902|chr3:52706692-52706693|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	577.774169921875	2	577.773539	1153.53253	0.52344	0.00030243	-0.064065	-3.7015E-05	0.45937	0.00026541	577.7735716561862	45.115	0.21006	45.022	44.891	45.101	-0.092472					8	3	3	0	0	0	0.24395	1	17157	17157		55.503	31.482	1	28099000			20340	2436	12928	12985	19536	19536					-0.03809948082130177
LSSLPTQMDY	10	Unmodified	_LSSLPTQMDY_					0	0	0		SPCS1|p.S31Ffs*13|1|0.35|ENSG00000114902|chr3:52706692-52706693|-/T|frameshift_variant;ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	SPCS1|p.S31Ffs*13|1|0.35|ENSG00000114902|chr3:52706692-52706693|-/T|frameshift_variant	SPCS1|p.S31Ffs*13|1|0.35|ENSG00000114902|chr3:52706692-52706693|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1154.539794921875	1	1154.5398	1153.53253	0.58736	0.00067813	0.097401	0.00011245	0.68476	0.00079058	1154.5400973587973	45.115	0.21006	45.022	44.891	45.101	-0.092472					8	3	3	0	0	0	0.01069	1	17160	17160		145.13	97.381	1	16608000			20341	2436	12928	12985	19537	19537					-0.03809948082130177
LSSPEQIQK	9	Unmodified	_LSSPEQIQK_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.F397Lfs*5|1|0.27|ENSG00000124207|chr20:49075371-49075371|T/-|frameshift_variant	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S1	1	515.7796630859375	2	515.282389	1028.55022	0.55249	0.00028469	-0.64102	-0.00033031	-0.088538	-4.5622E-05	515.2824619538798	30.893	0.5206	30.893	30.659	31.18	0					17	9	3	0	0	0	0.47809	1	11459	11459		18.146	4.2403	1	15100000			20342	2835	12929	12986	19538	19538					0.037091352350216766
LSSPVESVLFY	11	Unmodified	_LSSPVESVLFY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	620.8267211914062	2	620.826629	1239.63871	0.53002	0.00032905	0.020904	1.2978E-05	0.55092	0.00034203	620.8265211648849	57.827	0.31331	57.652	57.469	57.783	-0.17494					14	5	4	0	0	0	0.25546	1	22339	22339		69.105	34.703	1	57449000			20343	5303	12930	12987	19539	19539					0.028471307548443292
LSSPVESVLFY	11	Unmodified	_LSSPVESVLFY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	1240.6473388671875	1	1240.64598	1239.63871	0.61429	0.00076211	0.2797	0.00034701	0.89399	0.0011091	1240.6464029148678	57.827	0.20925	57.652	57.521	57.73	-0.17494					6	3	2	0	0	0	0.34323	1	22360	22360		60.074	3.8969	1	10468000			20344	5303	12930	12987	19540	19540					0.028471307548443292
LSSRRILLRFV	11	Unmodified	_LSSRRILLRFV_					0	0	0			REV__ENST00000312916.11_1_5:76326255-76326333:+|nuORF	REV__ENST00000312916.11_1_5:76326255-76326333:+|nuORF	MSMS	HCT116MG_D190212_S2	2	680.434814453125	2	680.432796	1358.85104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.801	1	57.626	57.126	58.126	-0.17494								0	0	0	0.95636	1	22325	22325		2.9952	1.8019	1		+		20345	14845	12931	12988	19541	19541					0.1859668667616461
LSSSLKTALRK	11	Unmodified	_LSSSLKTALRK_					0	0	0			REV__nc|ENSG00000114993|Q9BST9-3|RTKN	REV__nc|ENSG00000114993|Q9BST9-3|RTKN	MSMS	HCT116MG_D190212_S1	1	602.4623413085938	2	602.374612	1202.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.287	1	58.287	57.787	58.787	0								0	0	0	0.96208	1	22449	22449		0	0	1		+		20346	11523	12932	12989	19542	19542					0.14141323385570104
LSSSPRTLLL	10	Unmodified	_LSSSPRTLLL_					0	0	0			REV__ENST00000223029.7_1_7:6063275-6063332:+|nuORF	REV__ENST00000223029.7_1_7:6063275-6063332:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	543.8299560546875	2	543.829506	1085.64446	0.48481	0.00026365	0.043631	2.3728E-05	0.52844	0.00028738	543.8292820333213	46.11	0.35891	46.008	45.761	46.12	-0.10139					8	6	2	0	0	0	0.1448	1	17585	17585		65.235	7.7637	1	13450000	+		20347	14528	12933	12990	19543	19543					0.1050627405720661
LSSTALEDCI	10	Unmodified	_LSSTALEDCI_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD;FOCAD|p.D482Vfs*9|1|0.04|ENSG00000188352|chr9:20789597-20789598|-/TC|frameshift_variant;FOCAD|p.F778Lfs*5|1|0.29|ENSG00000188352|chr9:20881882-20881882|T/-|frameshift_variant;FOCAD|p.S483Ffs*25|1|0.04|ENSG00000188352|chr9:20789598-20789599|-/C|frameshift_variant	ENSG00000188352|ENST00000338382|FOCAD;FOCAD|p.S483Ffs*25|1|0.04|ENSG00000188352|chr9:20789598-20789599|-/C|frameshift_variant	ENSG00000188352|ENST00000338382|FOCAD	MSMS	HCT116MG_D190212_S1	1	526.2528686523438	2	526.25244	1050.49033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.292	1	31.292	30.792	31.792	0								0	0	0	0.92272	1	11508	11508		10.824	2.2306	1				20348	5980;9162	12934	12991	19544	19544					-0.03289923490501678
LSSTSCVSH	9	Unmodified	_LSSTSCVSH_					0	0	0			REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant	REV__MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	920.4581298828125	1	920.414208	919.406931	0.81294	0.00074824	-0.0065671	-6.0445E-06	0.80637	0.0007422	920.4139203760712	28.25	0.20772	27.92	27.822	28.029	-0.32987					6	3	2	0	0	0	0.35128	1	10261	10261		25.399	0.72543	1	10296000	+		20349	12158	12935	12992	19545	19545					-0.05599615147696113
LSSWDFRRLKP	11	Unmodified	_LSSWDFRRLKP_					0	0	0		ENST00000369288.6_1_1:145706772-145715535:-|nuORF	ENST00000369288.6_1_1:145706772-145715535:-|nuORF	ENST00000369288.6_1_1:145706772-145715535:-|nuORF	MSMS	HCT116MG_D190212_S4	4	702.8930053710938	2	702.890961	1403.76737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.852	1	44.479	43.979	44.979	-0.37326								0	0	0	0.95113	1	16528	16528		5.7319	0	1				20350	7411	12936	12993	19546	19546					0.08163530508431904
LSSWLEFTL	9	Unmodified	_LSSWLEFTL_					0	0	0		ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	MSMS	HCT116MG_D190212_S2	2	548.2913208007812	2	548.289682	1094.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.304	1	55.116	54.616	55.616	-0.18797								0	0	0	0.74436	1	21315	21315		16.942	1.0951	1				20351	2509	12937	12994	19547	19547					0.02131207383195033
LSSWVLLMK	9	Unmodified	_LSSWVLLMK_					0	0	0		nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1;nc|ENSG00000197249|P01009-3|SERPINA1	nc|ENSG00000197249|P01009-2|SERPINA1	nc|ENSG00000197249|P01009-2|SERPINA1	MULTI-SECPEP	HCT116MG_D190212_S3	3	538.7865600585938	2	538.81227	1075.60999	0.53344	0.00028742	-0.057146	-3.0791E-05	0.47629	0.00025663	538.8121908991876	55.78	0.21293	55.492	55.358	55.571	-0.28773					6	3	2	0	0	0	0.17321	1	21145	21145		23.79	12.966	1	2748300			20352	6130	12938	12995	19548	19548					0.0752073464473142
LSSWVLLMK	9	Unmodified	_LSSWVLLMK_					0	0	0		nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1;nc|ENSG00000197249|P01009-3|SERPINA1	nc|ENSG00000197249|P01009-2|SERPINA1	nc|ENSG00000197249|P01009-2|SERPINA1	MULTI-MSMS	HCT116MG_D190212_S4	4	538.8123168945312	2	538.81227	1075.60999	0.56742	0.00030573	0.35946	0.00019368	0.92687	0.00049941	538.8120679278342	55.792	0.26043	55.48	55.35	55.61	-0.312					7	4	2	0	0	0	0.45684	1	20923	20923		19.362	7.7216	1	4361000			20353	6130	12938	12995	19549	19549					0.0752073464473142
LSTFSQNMT	9	Unmodified	_LSTFSQNMT_					0	0	0		nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	MSMS	HCT116MG_D190212_S3	3	514.6951904296875	2	514.739499	1027.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.126	1	50.815	50.315	51.315	-0.31166								0	0	0	0.74083	1	19297	19297		17.113	0.1706	1				20354	5259	12939	12996	19550	19550					-0.04818772942121541
LSTHNGDES	9	Unmodified	_LSTHNGDES_					0	0	0			REV__ENSG00000177932|ENST00000315475|ZNF354C	REV__ENSG00000177932|ENST00000315475|ZNF354C	MULTI-MSMS	HCT116MG_D190212_S3	3	480.20562744140625	2	480.206878	958.399203	0.31862	0.000153	-1.9351	-0.00092925	-1.6165	-0.00077625	480.20587703708617	32.572	0.26023	32.292	32.148	32.409	-0.28014					7	4	2	0	0	0	0.2853	1	11972	11972		32.305	1.6689	1	2872600	+		20355	13585	12940	12997	19551	19551					-0.0816605114360982
LSTHRFKRE	9	Unmodified	_LSTHRFKRE_					0	0	0		ENSG00000137720|ENST00000260276|CFAP68	ENSG00000137720|ENST00000260276|CFAP68	ENSG00000137720|ENST00000260276|CFAP68	MSMS	HCT116MG_D190212_S1	1	587.3282470703125	2	587.327996	1172.64144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.618	1	36.618	36.118	37.118	0								0	0	0	0.76739	1	13655	13655		10.074	1.3285	1				20356	3496	12941	12998	19552	19552					0.0620244372300931
LSTIHVRLP	9	Unmodified	_LSTIHVRLP_					0	0	0			REV__nc|ENSG00000122133|P09466-2|PAEP	REV__nc|ENSG00000122133|P09466-2|PAEP	MSMS	HCT116MG_D190212_S2	2	518.3173828125	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.321	1	42.253	41.753	42.753	-0.068359								0	0	0	0.768	1	16016	16016		7.9102	3.1541	1		+		20357	11729	12942	12999	19553	19553					0.10773728468188892
LSTLSDRILF	10	Unmodified	_LSTLSDRILF_					0	0	0			REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C	REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MSMS	HCT116MG_D190212_S2	2	583.0459594726562	2	582.834788	1163.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.979	1	50.801	50.301	51.301	-0.17868								0	0	0	0.85631	1	19549	19549		21.537	2.175	1		+		20358	11025	12943	13000	19554	19554					0.07974256711599992
LSTLTRMPI	9	Unmodified	_LSTLTRMPI_					0	0	0			REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	516.3018188476562	2	516.299527	1030.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.555	1	37.171	36.671	37.671	-0.3839								0	0	0	0.76575	1	13786	13786		15.847	5.7733	1		+		20359	17915	12944	13001	19555	19555					0.07043260122304673
LSTLTRMPI	9	Unmodified	_LSTLTRMPI_					0	0	0			REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	REV__tr|U7T247|U7T247_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00467PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	516.301025390625	2	516.299527	1030.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.918	1	41.542	41.042	42.042	-0.37637								0	0	0	0.76718	1	15387	15387		10.824	2.2306	1		+		20360	17915	12944	13001	19556	19556					0.07043260122304673
LSTRLVHGP	9	Unmodified	_LSTRLVHGP_					0	0	0			REV__DNAAF2|p.R134Afs*45|1|0.71|ENSG00000165506|chr14:49634751-49634751|C/-|frameshift_variant	REV__DNAAF2|p.R134Afs*45|1|0.71|ENSG00000165506|chr14:49634751-49634751|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	490.2858581542969	2	490.287808	978.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.197	1	27.197	26.697	27.697	0								0	0	0	0.71969	1	9859	9859		18.135	5.6034	1		+		20361	10377	12945	13002	19557	19557					0.07092582400002811
LSTRMKVI	8	Unmodified	_LSTRMKVI_					0	0	0		ENST00000437190.1_1_1:173409695-173409833:-|nuORF	ENST00000437190.1_1_1:173409695-173409833:-|nuORF	ENST00000437190.1_1_1:173409695-173409833:-|nuORF	MSMS	HCT116MG_D190212_S4	4	474.29083251953125	2	474.288963	946.563372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.326	1	40.949	40.449	41.449	-0.37732								0	0	0	0.8837	1	15193	15193		8.5933	2.8329	1				20362	7888	12946	13003	19558	19558					0.08795294813444343
LSTSLDHRSK	10	Unmodified	_LSTSLDHRSK_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant;GEMIN5|p.L849_P850insIY|1|0.04|ENSG00000082516|chr5:154904591-154904592|-/GTATAT|inframe_insertion	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MSMS	HCT116MG_D190212_S1	1	381.87481689453125	3	381.875405	1142.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5651	1	3.5651	3.0651	4.0651	0								0	0	0	0.96263	1	1063	1063		1.9064	1.4519	1				20363	1423	12947	13004	19559	19559					0.03878727386609171
LSTVTYMSGMD	11	Unmodified	_LSTVTYMSGMD_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MSMS	HCT116MG_D190212_S4	4	402.17974853515625	3	402.178997	1203.51516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.13542	1	-0.12914	-0.62914	0.37086	-0.26456								0	0	0	0.96149	1	54	54		0.08335	0	1		+		20364	13414	12948	13005	19560	19560					-0.07845611679431386
LSVAARRRAK	10	Unmodified	_LSVAARRRAK_					0	0	0			REV__ENST00000521104.1_1_6:56557688-56557817:-|nuORF	REV__ENST00000521104.1_1_6:56557688-56557817:-|nuORF	MSMS	HCT116MG_D190212_S3	3	564.359619140625	2	564.359631	1126.70471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.167	1	51.857	51.357	52.357	-0.30927								0	0	0	0.95507	1	19714	19714		3.5965	0	1		+		20365	16235	12949	13006	19561	19561					0.14642429230934795
LSVAPPVISP	10	Unmodified	_LSVAPPVISP_					0	0	0			REV__ENST00000478002.5_1_1:155885750-155895538:-|nuORF	REV__ENST00000478002.5_1_1:155885750-155895538:-|nuORF	MSMS	HCT116MG_D190212_S2	2	490.2953796386719	2	490.294768	978.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.098	1	50.919	50.419	51.419	-0.17868								0	0	0	0.92917	1	19597	19597		9.3831	1.2276	1		+		20366	11998	12950	13007	19562	19562					0.08483815108411363
LSVCGELWGLY	11	Unmodified	_LSVCGELWGLY_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	413.87274169921875	3	413.874125	1238.60055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.137	1	24.137	23.637	24.637	0								0	0	0	0.93717	1	8627	8627		7.0371	0.41363	1		+		20367	13009	12951	13008	19563	19563					-0.009210784314518605
LSVEWPWHR	9	Unmodified	_LSVEWPWHR_					0	0	0			REV__nc|ENSG00000188086|Q7RTY3-2|PRSS45P	REV__nc|ENSG00000188086|Q7RTY3-2|PRSS45P	MSMS	HCT116MG_D190212_S2	2	605.3140258789062	2	605.311815	1208.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.322	1	32.092	31.592	32.592	-0.23009								0	0	0	0.50556	1	11955	11955		28.487	0.85804	1		+		20368	17253	12952	13009	19564	19564					0.01311656320012844
LSVFIGKIIT	10	Unmodified	_LSVFIGKIIT_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MSMS	HCT116MG_D190212_S4	4	364.2331237792969	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.74	1	58.457	57.957	58.957	-0.28305								0	0	0	0.96404	1	22086	22086		1.5923	0.52082	1				20369	3065	12953	13010	19565	19565					0.13852936584999043
LSVGSPSVLL	10	Unmodified	_LSVGSPSVLL_					0	0	0		nc|ENSG00000145241|Q03188-2|CENPC;CENPC|p.T575Lfs*21|1|0.35|ENSG00000145241|chr4:67508995-67508995|T/-|frameshift_variant;ENST00000510189.5_1_4:68359569-68411187:-|nuORF;ENSG00000145241|ENST00000273853|CENPC	nc|ENSG00000145241|Q03188-2|CENPC	nc|ENSG00000145241|Q03188-2|CENPC	MSMS	HCT116MG_D190212_S2	2	486.7428894042969	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.894	1	43.816	43.316	44.316	-0.078373								0	0	0	0.4096	1	16656	16656		52.268	6.2474	1				20370	401	12954	13011	19566	19566					0.08343511245811897
LSVLDIFP	8	Unmodified	_LSVLDIFP_					0	0	0		ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	MSMS	HCT116MG_D190212_S1	1	452.2608642578125	2	452.262936	902.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.684	1	36.684	36.184	37.184	0								0	0	0	0.77419	1	13682	13682		24.674	0.65332	1				20371	3709	12955	13012	19567	19567					0.0561645467132621
LSVLKLLIKIK	11	Unmodified	_LSVLKLLIKIK_					0	0	0			REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	REV__tr|U7SUL0|U7SUL0_FUSNUBacterialtranscriptionalactivatordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01209PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	423.72174072265625	3	423.30737	1266.90028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.17	1	35.784	35.284	36.284	-0.38558								0	0	0	0.96192	1	13226	13226		0.08335	0.08335	1		+		20372	17832	12956	13013	19568	19568					0.2775058191239168
LSVLPVWIL	9	Unmodified	_LSVLPVWIL_					0	0	0		ENST00000476039.1_1_7:107593997-107594057:-|nuORF	ENST00000476039.1_1_7:107593997-107594057:-|nuORF	ENST00000476039.1_1_7:107593997-107594057:-|nuORF	MSMS	HCT116MG_D190212_S1	1	520.3328247070312	2	520.331153	1038.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.111	1	42.111	41.611	42.611	0								0	0	0	0.76781	1	15874	15874		8.5933	0	1				20373	8203	12957	13014	19569	19569					0.12997568901823797
LSVLYKGGLL	10	Unmodified	_LSVLYKGGLL_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10;ABCB10|p.V410M|1|0.49|ENSG00000135776|chr1:229539567-229539567|C/T|missense_variant	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-SECPEP	HCT116MG_D190212_S1	1	531.2645874023438	2	531.831517	1061.64848	0.1005	5.3447E-05	0.42056	0.00022367	0.52106	0.00027712	531.8317502158835	40.064	0.20729	40.064	39.917	40.124	0					5	3	2	0	0	0	0.30856	1	15064	15064		6.7232	0	1	5877700			20374	3373	12958	13015	19570	19570					0.12012363550911687
LSVMLARRLSW	11	Unmodified	_LSVMLARRLSW_					0	0	0			REV__ENST00000473949.5_1_1:228284157-228284925:+|nuORF	REV__ENST00000473949.5_1_1:228284157-228284925:+|nuORF	MSMS	HCT116MG_D190212_S2	2	666.3820190429688	2	666.384457	1330.75436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.357	1	39.28	38.78	39.78	-0.077835								0	0	0	0.94851	1	14810	14810		7.1017	0.37856	1		+		20375	15894	12959	13016	19571	19571					0.10221376124718518
LSVNGASL	8	Unmodified	_LSVNGASL_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.D2774Rfs*7|1|0.29|ENSG00000133401|chr5:32101201-32101202|-/G|frameshift_variant;PDZD2|p.S2770Gfs*12|1|0.04|ENSG00000133401|chr5:32101193-32101194|-/GGGT|frameshift_variant;ENSG00000133401|ENST00000438447|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-MSMS	HCT116MG_D190212_S1	1	760.419677734375	1	760.419945	759.412668	0.63753	0.00048479	-0.5951	-0.00045252	0.042431	3.2266E-05	760.4191793545995	32.3	0.2602	32.3	32.17	32.43	0					7	4	2	0	0	0	0.076688	1	11919	11919		100.37	3.2968	1	13340000			20376	3240	12960	13017	19572	19572					0.023338514262945864
LSVNLPDNF	9	Unmodified	_LSVNLPDNF_					0	0	0		TPH1|p.P162Qfs*8|1|0.12|ENSG00000129167|chr11:18029347-18029348|-/CTTTCTAAATATT|frameshift_variant;ENSG00000129167|ENST00000682019|TPH1;nc|ENSG00000129167|P17752-2|TPH1	TPH1|p.P162Qfs*8|1|0.12|ENSG00000129167|chr11:18029347-18029348|-/CTTTCTAAATATT|frameshift_variant	TPH1|p.P162Qfs*8|1|0.12|ENSG00000129167|chr11:18029347-18029348|-/CTTTCTAAATATT|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	509.2362365722656	2	509.763832	1017.51311	0.20361	0.00010379	0.17788	9.0677E-05	0.38149	0.00019447	509.763928463627	33.879	0.20779	33.585	33.455	33.663	-0.29419					6	3	2	0	0	0	0.24195	1	12464	12464		1.1933	0	1	1907800			20377	3021	12961	13018	19573	19573					0.0050546368928507945
LSVPHRRLV	9	Unmodified	_LSVPHRRLV_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3;nc|ENSG00000120645|Q9UPP2-2|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MSMS	HCT116MG_D190212_S2	2	539.1723022460938	2	538.838	1075.66145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.023	1	49.859	49.359	50.359	-0.16369								0	0	0	0.76781	1	19162	19162		8.5933	0	1				20378	2704	12962	13019	19574	19574					0.1266423945362476
LSVPRQRRRRR	11	Unmodified	_LSVPRQRRRRR_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	740.4639282226562	2	740.463816	1478.91308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.955	1	44.645	44.145	45.145	-0.30927								0	0	0	0.96157	1	16818	16818		0.26902	0.26902	1				20379	430	12963	13020	19575	19575					0.19277850867842972
LSVWLVAVY	9	Unmodified	_LSVWLVAVY_					0	0	0		tr|U7SSU4|U7SSU4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01499PE=3SV=1	tr|U7SSU4|U7SSU4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01499PE=3SV=1	tr|U7SSU4|U7SSU4_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01499PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	525.7957153320312	2	525.305136	1048.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.29	1	48.29	47.79	48.79	0								0	0	0	0.64498	1	18370	18370		21.747	1.293	1				20380	18423	12964	13021	19576	19576					0.07336405488081255
LSWCWRSHWTE	11	Unmodified	_LSWCWRSHWTE_					0	0	0		ENST00000264360.6_2_4:134071821-134071899:+|nuORF	ENST00000264360.6_2_4:134071821-134071899:+|nuORF	ENST00000264360.6_2_4:134071821-134071899:+|nuORF	MSMS	HCT116MG_D190212_S2	2	745.83642578125	2	745.835328	1489.6561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.055	1	44.963	44.463	45.463	-0.092472								0	0	0	0.95196	1	17125	17125		5.2969	0	1				20381	6890	12965	13022	19577	19577					-0.06913852191109982
LSWFFLLIRYK	11	Unmodified	_LSWFFLLIRYK_					0	0	0		nc|ENSG00000196376|Q5T1Q4-2|SLC35F1;ENSG00000196376|ENST00000360388|SLC35F1	nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MULTI-MSMS	HCT116MG_D190212_S2	2	495.9588623046875	3	495.958741	1484.85439	0.34039	0.00016882	0.51662	0.00025622	0.85702	0.00042505	495.9588952868974	54.881	1.792	54.694	53.689	55.481	-0.18797					100	34	4	0	0	0	0.74191	1	20818	20818		0.40827	0.041592	1	178030000			20382	6065	12966	13023	19578	19578					0.13135936730168396
LSWFFLLIRYK	11	Unmodified	_LSWFFLLIRYK_					0	0	0		nc|ENSG00000196376|Q5T1Q4-2|SLC35F1;ENSG00000196376|ENST00000360388|SLC35F1	nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MULTI-MSMS	HCT116MG_D190212_S2	2	743.4344482421875	2	743.434473	1484.85439	0.98831	0.00073475	0.26326	0.00019571	1.2516	0.00093046	743.4344799301937	54.946	1.1749	54.758	54.203	55.377	-0.18797					62	22	4	0	0	0	0.74191	1	21064	21064		1.0715	0.20709	1	105510000			20383	6065	12966	13023	19579	19579					0.13135936730168396
LSWFFLLIRYK	11	Unmodified	_LSWFFLLIRYK_					0	0	0		nc|ENSG00000196376|Q5T1Q4-2|SLC35F1;ENSG00000196376|ENST00000360388|SLC35F1	nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MULTI-MATCH	HCT116MG_D190212_S3	3		3	495.958741	1484.85439	0.30809	0.0001528	-0.099759	-4.9477E-05	0.20833	0.00010333	495.9586297946649	55.14	0.47056	54.848	54.508	54.979	-0.2918	0.051096	-0.00082884	NaN	0.40827	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2567600			20384	6065	12966	13023							0.13135936730168396
LSWFFLLIRYK	11	Unmodified	_LSWFFLLIRYK_					0	0	0		nc|ENSG00000196376|Q5T1Q4-2|SLC35F1;ENSG00000196376|ENST00000360388|SLC35F1	nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	743.434473	1484.85439	0.94926	0.00070571	0.54781	0.00040726	1.4971	0.001113	743.4348311152303	55.111	0.67767	54.794	54.406	55.084	-0.31774	0.017811	0.00030063	NaN	1.0715	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7478700			20385	6065	12966	13023							0.13135936730168396
LSWGNPPD	8	Unmodified	_LSWGNPPD_					0	0	0		ENST00000370332.5_1_1:92949124-92949509:-|nuORF	ENST00000370332.5_1_1:92949124-92949509:-|nuORF	ENST00000370332.5_1_1:92949124-92949509:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	443.20892333984375	2	443.208692	884.402832	0.28921	0.00012818	-0.065597	-2.9073E-05	0.22361	9.9108E-05	443.2087118144784	36.496	0.2075	36.371	36.229	36.437	-0.12485					5	3	2	0	0	0	0.64404	1	13674	13674		28.487	0	1	9597900			20386	7424	12967	13024	19580	19580					-0.04399336579103874
LSWLNIRV	8	Unmodified	_LSWLNIRV_					0	0	0		ENSG00000065923|ENST00000616978|SLC9A7;ENST00000554295.1_1_12:98849015-98849897:-|nuORF;nc|ENSG00000065923|Q96T83|SLC9A7	ENSG00000065923|ENST00000616978|SLC9A7	ENSG00000065923|ENST00000616978|SLC9A7	MSMS	HCT116MG_D190212_S4	4	500.7707824707031	2	500.800552	999.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.858	1	53.528	53.028	54.028	-0.32923								0	0	0	0.8837	1	20121	20121		5.2307	0	1				20387	1163	12968	13025	19581	19581					0.08674056922416185
LSWRWTTQTFY	11	Unmodified	_LSWRWTTQTFY_					0	0	0			REV__FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant	REV__FRMPD4|p.A947Qfs*130|1|0.42|ENSG00000169933|chrX:12717658-12717658|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	744.8668823242188	2	744.867151	1487.71975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.488	1	40.419	39.919	40.919	-0.069626								0	0	0	0.95581	1	15270	15270		3.2813	0	1		+		20388	16839	12969	13026	19582	19582					-0.004601684824137919
LSWVTKRYP	9	Unmodified	_LSWVTKRYP_					0	0	0		ENST00000465608.1_1_10:99359730-99359997:+|nuORF	ENST00000465608.1_1_10:99359730-99359997:+|nuORF	ENST00000465608.1_1_10:99359730-99359997:+|nuORF	MSMS	HCT116MG_D190212_S2	2	575.3215942382812	2	575.324391	1148.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.66	1	38.575	38.075	39.075	-0.084618								0	0	0	0.59795	1	14527	14527		24.021	3.5669	1				20389	8093	12970	13027	19583	19583					0.06585711122625071
LSYMEFPSLDP	11	Unmodified	_LSYMEFPSLDP_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	433.5371398925781	3	433.53729	1297.59004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.945	1	16.945	16.445	17.445	0								0	0	0	0.95113	1	5736	5736		2.6312	0.88896	1				20390	6046	12971	13028	19584	19584					-0.046851058765469134
LSYPMGQPP	9	Unmodified	_LSYPMGQPP_					0	0	0			REV__ENST00000396821.7_1_22:38879929-38880097:-|nuORF	REV__ENST00000396821.7_1_22:38879929-38880097:-|nuORF	MSMS	HCT116MG_D190212_S4	4	495.2442321777344	2	495.241678	988.468803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.212	1	39.834	39.334	40.334	-0.37843								0	0	0	0.76669	1	14745	14745		12.532	0	1		+		20391	15357	12972	13029	19585	19585					-0.02589263728543756
LTAASSPSVFP	11	Unmodified	_LTAASSPSVFP_					0	0	0		ZIC4|p.W175Lfs*43|1|0.13|ENSG00000174963|chr3:147396018-147396019|-/A|frameshift_variant;nc|ENSG00000174963|Q8N9L1-2|ZIC4;ENSG00000174963|ENST00000383075|ZIC4;nc|ENSG00000174963|Q8N9L1-5|ZIC4;nc|ENSG00000174963|Q8N9L1-3|ZIC4;ENST00000493664.5_1_3:147108719-147114575:-|nuORF	ZIC4|p.W175Lfs*43|1|0.13|ENSG00000174963|chr3:147396018-147396019|-/A|frameshift_variant	ZIC4|p.W175Lfs*43|1|0.13|ENSG00000174963|chr3:147396018-147396019|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	538.7847290039062	2	538.784764	1075.55498	0.49414	0.00026624	0.45916	0.00024739	0.9533	0.00051362	538.7846632734453	33.582	0.93752	33.582	33.452	34.389	0					30	17	2	0	0	0	0.68267	1	12701	12701		26.268	0	1	20346000			20392	5355	12973	13030	19586	19586					0.020220193778186513
LTAGDYIYI	9	Unmodified	_LTAGDYIYI_					0	0	0		RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant;ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1028.52978515625	1	1028.52989	1027.52261	0.4299	0.00044217	-0.13712	-0.00014103	0.29278	0.00030114	1028.5296836629889	54.619	0.25531	54.43	54.303	54.559	-0.1894					12	4	3	0	0	0	0.065014	1	21057	21057		67.344	0	1	67852000			20393	5707	12974	13031	19587	19587					0.009952319747981164
LTAKKKLKK	9	Unmodified	_LTAKKKLKK_					0	0	0		RPF1|p.A80T|1|0.36|ENSG00000117133|chr1:84480965-84480965|G/A|missense_variant	RPF1|p.A80T|1|0.36|ENSG00000117133|chr1:84480965-84480965|G/A|missense_variant	RPF1|p.A80T|1|0.36|ENSG00000117133|chr1:84480965-84480965|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	353.2532958984375	3	353.253376	1056.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.501	1	54.205	53.705	54.705	-0.29587								0	0	0	0.77019	1	20653	20653		0.23584	0.23584	1				20394	18123	12975	13032	19588	19588					0.2122003795011551
LTATDGETA	9	Unmodified	_LTATDGETA_					0	0	0			REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	HCT116MG_D190212_S3	3	878.4110107421875	1	878.410168	877.402892	0.89027	0.00078202	0.75974	0.00066737	1.65	0.0014494	878.4110151531969	27.783	0.25986	27.595	27.517	27.777	-0.18847					7	4	2	0	0	0	0.13706	1	10057	10057		50.855	8.7605	1	3748700	+		20395	12679;17167	12976	13033	19589	19589					-0.040713813697493606
LTATSSRPP	9	Unmodified	_LTATSSRPP_					0	0	0			REV__PCDHB2|p.A656S|1|0.14|ENSG00000112852|chr5:141096756-141096756|G/T|missense_variant	REV__PCDHB2|p.A656S|1|0.14|ENSG00000112852|chr5:141096756-141096756|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	465.25616455078125	2	465.256174	928.497795	-0.045586	-2.1209E-05	0.47032	0.00021882	0.42473	0.00019761	465.25636770254476	29.5	0.208	29.151	29.033	29.241	-0.34921					5	3	2	0	0	0	0.60612	1	10680	10680		10.824	0.75	1	2930400	+		20396	17391	12977	13034	19590	19590					0.03068596892092046
LTAVPVTVL	9	Unmodified	_LTAVPVTVL_					0	0	0			REV__ENST00000479510.2_1_6:33387852-33406697:+|nuORF	REV__ENST00000479510.2_1_6:33387852-33406697:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	912.5767822265625	1	912.576445	911.569169	0.89974	0.00082108	-0.62337	-0.00056888	0.27637	0.00025221	912.5759971841027	55.58	0.25713	55.58	55.452	55.709	0					6	4	2	0	0	0	0.1037	1	21376	21376		57.471	15.377	1	23399000	+		20397	14065	12978	13035	19591	19591					0.10984716596738053
LTCNSMVLFDH	11	Unmodified	_LTCNSMVLFDH_					0	0	0		TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2B|p.S1441Vfs*41|4|0.13|ENSG00000077097|chr3:25606100-25606100|T/-|frameshift_variant;TOP2B|p.S1476Ffs*11|2|0.3|ENSG00000077097|chr3:25604822-25604823|-/A|frameshift_variant;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	TOP2B|p.S1441Kfs*20|1|0.32|ENSG00000077097|chr3:25606099-25606100|-/T|frameshift_variant;TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	640.5824584960938	2	640.294116	1278.57368	0.18527	0.00011863	-0.20352	-0.00013031	-0.018252	-1.1687E-05	640.2939282641836	43.35	0.66972	43.277	42.891	43.561	-0.073376					34	12	5	0	0	0	0.72373	1	16511	16511		13.042	2.2185	1	219190000			20398	3154;1348	12979	13036	19592	19592					-0.054465103143002125
LTDAALVTL	9	Unmodified	_LTDAALVTL_					0	0	0		ENST00000392066.7_1_2:223787487-223787541:+|nuORF	ENST00000392066.7_1_2:223787487-223787541:+|nuORF	ENST00000392066.7_1_2:223787487-223787541:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2689208984375	2	458.771126	915.527698	0.091704	4.2071E-05	-2.4966	-0.0011454	-2.4049	-0.0011033	458.77108931010025	37.057	0.41177	36.942	36.757	37.168	-0.11478					15	7	3	0	0	0	0.30117	1	13925	13925		30.637	0	1	59508000			20399	7607	12980	13037	19593	19593					0.06655535837444404
LTDDDLLRY	9	Unmodified	_LTDDDLLRY_					0	0	0		GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	562.4618530273438	2	562.285128	1122.5557	0.39943	0.00022459	-0.0019789	-1.1127E-06	0.39745	0.00022348	562.2849585069101	45.715	0.20483	45.613	45.453	45.658	-0.1014					5	3	2	0	0	0	0.071914	1	17409	17409		63.961	31.923	1	15293000			20400	2422	12981	13038	19594	19594					-0.0006718597312556085
LTDDDLLRY	9	Unmodified	_LTDDDLLRY_					0	0	0		GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	562.2850952148438	2	562.285128	1122.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.818	1	45.717	45.217	46.217	-0.1014								0	0	0	0.47756	1	17435	17435		29.841	12.898	1				20401	2422	12981	13038	19595	19595					-0.0006718597312556085
LTDDDLLRY	9	Unmodified	_LTDDDLLRY_					0	0	0		GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	562.2855834960938	2	562.285128	1122.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.979	1	45.668	45.168	46.168	-0.31166								0	0	0	0.029994	1	17231	17231		82.529	44.354	1				20402	2422	12981	13038	19596	19596					-0.0006718597312556085
LTDDDLLRY	9	Unmodified	_LTDDDLLRY_					0	0	0		GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant;ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	GBE1|p.G620Afs*33|1|0.08|ENSG00000114480|chr3:81535270-81535271|-/TAAGG|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	562.285128	1122.5557	0.55501	0.00031207	-0.050147	-2.8197E-05	0.50486	0.00028388	562.2850492819197	45.935	0.20742	45.624	45.461	45.668	-0.31094	0.0055505	-1.8822E-05	NaN	63.961	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7127900			20403	2422	12981	13038							-0.0006718597312556085
LTDDGNKW	8	Unmodified	_LTDDGNKW_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S2	2	474.72467041015625	2	474.724707	947.43486	-0.10105	-4.797E-05	0.39298	0.00018656	0.29193	0.00013859	474.72483486834057	30.128	0.25785	29.843	29.667	29.925	-0.28453					10	4	3	0	0	0	0.067369	1	11067	11067		104.8	50.026	1	55635000			20404	5366	12982	13039	19597	19597					-0.040959688959446794
LTDDGNKW	8	Unmodified	_LTDDGNKW_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S2	2	948.443359375	1	948.442137	947.43486	0.31325	0.0002971	0.4497	0.00042651	0.76295	0.00072361	948.4428018988413	30.132	0.20628	29.848	29.718	29.925	-0.28453					5	3	2	0	0	0	0.036435	1	11096	11096		139.14	35.39	1	14741000			20405	5366	12982	13039	19598	19598					-0.040959688959446794
LTDDGNKWL	9	Unmodified	_LTDDGNKWL_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S2	2	531.2671508789062	2	531.266739	1060.51892	0.76222	0.00040494	2.5829	0.0013722	3.3451	0.0017771	531.2667246835009	42.675	0.26007	42.605	42.429	42.689	-0.069984					14	4	4	0	0	0	0.016744	1	16173	16173		99.755	41.076	1	25457000			20406	5366	12983	13040	19599	19599					-0.008914377990549838
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S1	1	612.798583984375	2	612.798403	1223.58225	0.45634	0.00027964	0.0064739	3.9672E-06	0.46281	0.00028361	612.7983978490271	45.01	0.31163	45.01	44.88	45.192	0					19	5	5	0	0	0	0.00034544	1	17046	17046		189.73	85.908	1	330130000			20407	5366	12984	13041	19600	19600					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S2	2	612.7987670898438	2	612.798403	1223.58225	0.59404	0.00036403	-0.057701	-3.5359E-05	0.53634	0.00032867	612.7985022288999	45.007	1.0871	44.915	44.58	45.667	-0.092476					66	20	6	0	0	0	0.0064345	3	17067	17039;17067;17301		163.69	60.333	1	2678300000			20408	5366	12984	13041	19601;19602;19603	19602					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S2	2	1224.589599609375	1	1224.58953	1223.58225	0.68327	0.00083673	0.15106	0.00018499	0.83433	0.0010217	1224.589756618993	44.981	0.366	44.888	44.735	45.101	-0.092472					18	6	4	0	0	0	0.0084034	1	17096	17096		157.8	47.242	1	93041000			20409	5366	12984	13041	19604	19604					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S3	3	612.7986450195312	2	612.798403	1223.58225	0.46116	0.0002826	-0.10774	-6.602E-05	0.35342	0.00021658	612.7984144303582	45.276	0.88556	44.967	44.732	45.618	-0.30927					59	16	6	0	0	0	0.0034649	4	16925	16894;16925;17082;17158		171.46	78.811	1	831540000			20410	5366	12984	13041	19605;19606;19607;19608	19606					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S3	3	1225.59375	1	1224.58953	1223.58225	0.67679	0.0008288	0.32293	0.00039545	0.99972	0.0012242	1224.5897321556495	45.276	0.36525	44.967	44.732	45.098	-0.30927					12	6	3	0	0	0	0.052106	1	16955	16955		85.642	25.568	1	10631000			20411	5366	12984	13041	19609	19609					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MSMS	HCT116MG_D190212_S4	4	612.79833984375	2	612.798403	1223.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.881	1	45.509	45.009	46.009	-0.37206								0	0	0	0.80235	1	16941	16941		28.495	3.5035	1				20412	5366	12984	13041	19610	19610					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000466987.1_1_3:184021130-184021370:+|nuORF;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1224.58953	1223.58225	0.42837	0.00052457	-0.70498	-0.00086331	-0.27661	-0.00033874	1224.5878051811133	45.334	0.20745	44.961	44.832	45.039	-0.37266	0.022444	-0.0010697	NaN	157.8	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3255200			20413	5366	12984	13041							-0.020594970817910507
LTDDKLSQY	9	Unmodified	_LTDDKLSQY_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	HCT116MG_D190212_S1	1	541.7722778320312	2	541.771854	1081.52915	0.59635	0.00032309	0.085655	4.6405E-05	0.68201	0.00036949	541.771881202105	30.524	0.25996	30.524	30.347	30.607	0					6	4	2	0	0	0	0.046513	1	11207	11207		91.085	47.312	1	3976300			20414	2740	12985	13042	19611	19611					-0.008348748644721127
LTDDKLSQY	9	Unmodified	_LTDDKLSQY_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MSMS	HCT116MG_D190212_S2	2	541.772216796875	2	541.771854	1081.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.806	1	30.539	30.039	31.039	-0.26704								0	0	0	0.012072	1	11340	11340		121.5	62.135	1				20415	2740	12985	13042	19612	19612					-0.008348748644721127
LTDDKLSQY	9	Unmodified	_LTDDKLSQY_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MSMS	HCT116MG_D190212_S3	3	541.7723388671875	2	541.771854	1081.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.965	1	30.704	30.204	31.204	-0.26071								0	0	0	0.03418	1	11295	11295		93.938	42.308	1				20416	2740	12985	13042	19613	19613					-0.008348748644721127
LTDFIQKY	8	Unmodified	_LTDFIQKY_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	514.27685546875	2	514.276575	1026.5386	0.19451	0.00010003	0.49683	0.00025551	0.69134	0.00035554	514.2768139613287	42.252	0.20744	42.252	42.123	42.33	0					6	3	2	0	0	0	0.0044015	1	15941	15941		181.33	57.877	1	24747000			20417	1158	12986	13043	19614	19614					0.026389382117031346
LTDFIQKY	8	Unmodified	_LTDFIQKY_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MSMS	HCT116MG_D190212_S2	2	514.2764282226562	2	514.276575	1026.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.275	1	42.207	41.707	42.707	-0.068199								0	0	0	2.5342E-07	1	15997	15997		147.83	55.009	1				20418	1158	12986	13043	19615	19615					0.026389382117031346
LTDFIREEY	9	Unmodified	_LTDFIREEY_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-MSMS	HCT116MG_D190212_S1	1	593.2936401367188	2	593.292953	1184.57135	0.51203	0.00030378	0.27376	0.00016242	0.78579	0.0004662	593.2930205173951	43.756	0.25777	43.756	43.626	43.884	0					7	4	2	0	0	0	0.0082095	1	16561	16561		117.76	56.403	1	36872000			20419	5828	12987	13044	19616	19616					-0.013548994561006111
LTDFIREEY	9	Unmodified	_LTDFIREEY_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-MSMS	HCT116MG_D190212_S3	3	593.2929077148438	2	593.292953	1184.57135	0.73091	0.00043364	-0.64404	-0.0003821	0.08687	5.154E-05	593.2927730398687	44.041	0.31223	43.735	43.605	43.917	-0.30616					7	5	2	0	0	0	0.029121	1	16462	16462		87.258	35.628	1	9291600			20420	5828	12987	13044	19617	19617					-0.013548994561006111
LTDFIREEY	9	Unmodified	_LTDFIREEY_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	HCT116MG_D190212_S4	4	593.1581420898438	2	593.292953	1184.57135	0.83606	0.00049603	-0.59223	-0.00035137	0.24383	0.00014466	593.794156564991	44.075	0.20723	43.701	43.571	43.779	-0.37373					6	3	2	0	0	0	0.24622	1	16213	16213		7.2892	0.56607	1	2973300			20421	5828	12987	13044	19618	19618					-0.013548994561006111
LTDFQKAVY	9	Unmodified	_LTDFQKAVY_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.R438Gfs*15|1|0.38|ENSG00000182150|chr9:95921290-95921290|A/-|frameshift_variant;nc|ENSG00000182150|Q5T890-2|ERCC6L2;ERCC6L2|p.T191Nfs*22|1|0.04|ENSG00000182150|chr9:96004683-96004683|C/-|frameshift_variant;ERCC6L2|p.T303Hfs*50|1|0.13|ENSG00000182150|chr9:96012537-96012537|A/-|frameshift_variant	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	HCT116MG_D190212_S3	3	542.7881469726562	2	542.787307	1083.56006	0.32262	0.00017511	0.47053	0.0002554	0.79315	0.00043051	542.7876811052606	38.64	0.20832	38.339	38.196	38.404	-0.30137					6	3	2	0	0	0	0.34272	1	14345	14345		26.268	1.2772	1	4515800			20422	5657	12988	13045	19619	19619					0.02162323240418118
LTDGSLTLA	9	Unmodified	_LTDGSLTLA_					0	0	0			REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	890.4837036132812	1	890.482939	889.475663	0.93542	0.00083298	-0.15387	-0.00013702	0.78155	0.00069596	890.4827948952184	45.481	0.31317	45.17	44.992	45.305	-0.31094					11	5	3	0	0	0	0.031005	1	17034	17034		85.357	0	1	8321600	+		20423	12874	12989	13046	19620	19620					0.02650372423670433
LTDGSLTLA	9	Unmodified	_LTDGSLTLA_					0	0	0			REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	890.483642578125	1	890.482939	889.475663	0.79453	0.00070751	0.17902	0.00015942	0.97355	0.00086693	890.4828699649124	45.542	0.25473	45.169	45.039	45.294	-0.37266					7	4	2	0	0	0	0.031005	1	16809	16809		85.357	0	1	6309200	+		20424	12874	12989	13046	19621	19621					0.02650372423670433
LTDGSLTLA	9	Unmodified	_LTDGSLTLA_					0	0	0			REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	890.482939	889.475663	0.93542	0.00083298	-0.15387	-0.00013702	0.78155	0.00069596	890.4827948952184	45.481	0.31317	45.17	44.992	45.305	-0.31094	0.00035617	-8.906E-05	NaN	85.357	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8321600	+		20425	12874	12989	13046							0.02650372423670433
LTDGSLTLA	9	Unmodified	_LTDGSLTLA_					0	0	0			REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	REV__LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	890.482939	889.475663	0.79453	0.00070751	0.17902	0.00015942	0.97355	0.00086693	890.4828699649124	45.542	0.25473	45.169	45.039	45.294	-0.37266	-0.00035617	0.00020738	NaN	85.357	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6309200	+		20426	12874	12989	13046							0.02650372423670433
LTDGVSQIHY	10	Unmodified	_LTDGVSQIHY_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;THADA|p.A593Lfs*5|2|0.35|ENSG00000115970|chr2:43572945-43572945|C/-|frameshift_variant;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	HCT116MG_D190212_S2	2	566.569091796875	2	566.785296	1131.55604	0.56908	0.00032255	-1.7088	-0.00096853	-1.1397	-0.00064598	567.2864549126382	36.456	0.15548	36.328	36.226	36.382	-0.12799					4	2	2	0	0	0	0.2615	1	13620	13620		31.268	6.2774	1	3903700			20427	2494	12990	13047	19622	19622					-0.004477662532735849
LTDIDLQL	8	Unmodified	_LTDIDLQL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant;CSPG4|p.G245Afs*98|1|0.18|ENSG00000173546|chr15:75690331-75690331|C/-|frameshift_variant;CSPG4|p.G443Afs*16|1|0.15|ENSG00000173546|chr15:75689737-75689737|C/-|frameshift_variant;ENST00000567704.5_1_15:78187063-78188741:+|nuORF;ENST00000558282.5_1_15:85734698-85737265:+|nuORF;ENST00000333235.3_1_Y:27624438-27626982:+|nuORF;ENST00000560634.1_1_15:84855599-84858179:+|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S3	3	930.51513671875	1	930.514239	929.506963	1.0558	0.0009824	0.02212	2.0583E-05	1.0779	0.001003	930.5141170645666	56.721	0.20882	56.438	56.359	56.568	-0.28367					5	3	2	0	0	0	0.25164	1	21570	21570		63.563	3.1733	1	2368500			20428	5292	12991	13048	19623	19623					0.039389454577644756
LTDIFQHDTY	10	Unmodified	_LTDIFQHDTY_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-MSMS	HCT116MG_D190212_S1	1	627.2979736328125	2	626.79586	1251.57717	0.81863	0.00051312	0.1141	7.1516E-05	0.93273	0.00058463	626.7958743540992	46.032	0.208	46.032	45.922	46.13	0					5	3	2	0	0	0	0.036884	1	17472	17472		96.936	56.986	1	16894000			20429	4695	12992	13049	19624	19624					-0.038558009444159325
LTDIFQHDTY	10	Unmodified	_LTDIFQHDTY_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-MSMS	HCT116MG_D190212_S2	2	626.7958984375	2	626.79586	1251.57717	0.51238	0.00032116	0.20306	0.00012728	0.71544	0.00044844	626.7957941768053	46.042	0.3074	45.941	45.761	46.068	-0.1014					14	5	4	0	0	0	0.01041	1	17522	17522		146.68	81.206	1	85309000			20430	4695	12992	13049	19625	19625					-0.038558009444159325
LTDIIRPE	8	Unmodified	_LTDIIRPE_					0	0	0		tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	tr|U7SVL2|U7SVL2_FUSNUDNApolymeraseIVOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dinBPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	478.7741394042969	2	478.7742	955.533846	0.36032	0.00017251	-0.19919	-9.5365E-05	0.16113	7.7145E-05	478.7740267790252	36.433	0.31161	36.305	36.174	36.486	-0.12799					8	5	2	0	0	0	0.37603	1	13652	13652		52.268	2.7141	1	20238000			20431	18493	12993	13050	19626	19626					0.054300540689382615
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S1	1	569.8135375976562	2	569.311146	1136.60774	0.20992	0.00011951	-0.069029	-3.9299E-05	0.14089	8.0208E-05	569.3110685550957	36.548	0.41822	36.548	36.365	36.783	0					24	7	5	0	0	0	0.0052575	1	13622	13622		166.77	49.009	1	626840000			20432	4945	12994	13051	19627	19627					0.04489977440630355
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S1	1	1137.6156005859375	1	1137.61502	1136.60774	0.4784	0.00054423	0.15513	0.00017647	0.63353	0.00072071	1137.6151605293214	36.548	0.20952	36.548	36.417	36.627	0					5	3	2	0	0	0	0.00022982	1	13649	13649		192.32	105.99	1	19808000			20433	4945	12994	13051	19628	19628					0.04489977440630355
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	569.3115234375	2	569.311146	1136.60774	0.50632	0.00028825	-0.14509	-8.2604E-05	0.36122	0.00020565	569.3111689495734	36.536	0.6722	36.421	36.239	36.912	-0.11478					43	12	6	0	0	0	0.0023126	1	13666	13666		174.48	45.55	1	2234000000			20434	4945	12994	13051	19629	19629					0.04489977440630355
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	1137.6160888671875	1	1137.61502	1136.60774	0.70529	0.00080235	-0.035972	-4.0922E-05	0.66932	0.00076143	1137.6148652935283	36.563	0.31022	36.448	36.292	36.602	-0.11478					13	5	3	0	0	0	1.1597E-10	1	13671	13671		220.1	113.16	1	107570000			20435	4945	12994	13051	19630	19630					0.04489977440630355
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S3	3	569.311279296875	2	569.311146	1136.60774	0.383	0.00021805	0.044736	2.5469E-05	0.42774	0.00024352	569.3111421269823	36.784	0.46812	36.483	36.301	36.769	-0.30113					30	8	5	0	0	0	0.00046105	1	13583	13583		187.14	58.21	1	231600000			20436	4945	12994	13051	19631	19631					0.04489977440630355
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S3	3	1137.6158447265625	1	1137.61502	1136.60774	0.35513	0.000404	-0.24517	-0.00027891	0.10995	0.00012509	1137.6143060695772	36.775	0.20778	36.474	36.353	36.561	-0.30113					7	3	3	0	0	0	0.011036	1	13618	13618		143.21	80.641	1	4098400			20437	4945	12994	13051	19632	19632					0.04489977440630355
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S4	4	569.3108520507812	2	569.311146	1136.60774	0.53517	0.00030468	-0.16638	-9.4722E-05	0.36879	0.00020995	569.3109301936134	36.892	0.30767	36.507	36.331	36.639	-0.38486					16	5	4	0	0	0	0.00022982	1	13504	13504		192.32	63.389	1	45546000			20438	4945	12994	13051	19633	19633					0.04489977440630355
LTDKDTGVTRY	11	Unmodified	_LTDKDTGVTRY_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MSMS	HCT116MG_D190212_S1	1	634.8281860351562	2	634.827692	1267.64083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.839	1	23.839	23.339	24.339	0								0	0	0	0.93494	1	8508	8508		12.856	1.3612	1				20439	2251	12995	13052	19634	19634					0.017715594926585254
LTDKDTGVTRY	11	Unmodified	_LTDKDTGVTRY_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MULTI-MSMS	HCT116MG_D190212_S2	2	634.828369140625	2	634.827692	1267.64083	0.68341	0.00043385	-0.13253	-8.4132E-05	0.55089	0.00034972	634.8278268258446	24.242	0.26011	23.862	23.666	23.926	-0.38003					8	4	3	0	0	0	0.010693	1	8696	8696		168	108.64	1	12359000			20440	2251	12995	13052	19635	19635					0.017715594926585254
LTDKDTGVTRY	11	Unmodified	_LTDKDTGVTRY_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MULTI-MATCH	HCT116MG_D190212_S3	3		2	634.827692	1267.64083	0.44406	0.0002819	0.49276	0.00031282	0.93682	0.00059472	634.8278807069094	23.826	0.15645	23.765	23.634	23.791	-0.061449	-0.048696	0.00065731	NaN	168	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2211100			20441	2251	12995	13052							0.017715594926585254
LTDKQNLHQ	9	Unmodified	_LTDKQNLHQ_					0	0	0			REV__HLA-DMB|p.Q102Pfs*8|1|0.21|ENSG00000242574|chr6:32938718-32938719|-/GT|frameshift_variant	REV__HLA-DMB|p.Q102Pfs*8|1|0.21|ENSG00000242574|chr6:32938718-32938719|-/GT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	548.79150390625	2	548.790912	1095.56727	0.54773	0.00030059	0.12164	6.6754E-05	0.66937	0.00036734	548.7909721029498	34.347	0.36505	34.347	34.076	34.441	0					9	6	2	0	0	0	0.35128	1	12761	12761		25.399	1.3787	1	8121400	+		20442	14359	12996	13053	19636	19636					0.023310558408411453
LTDKQNLHQ	9	Unmodified	_LTDKQNLHQ_					0	0	0			REV__HLA-DMB|p.Q102Pfs*8|1|0.21|ENSG00000242574|chr6:32938718-32938719|-/GT|frameshift_variant	REV__HLA-DMB|p.Q102Pfs*8|1|0.21|ENSG00000242574|chr6:32938718-32938719|-/GT|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	548.790912	1095.56727	0.68852	0.00037785	0.3527	0.00019356	1.0412	0.00057141	548.7912839197778	34.551	0.20583	34.382	34.234	34.439	-0.16883	0.017337	0.00018115	NaN	25.399	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15453000	+		20443	14359	12996	13053							0.023310558408411453
LTDLINLRPN	10	Unmodified	_LTDLINLRPN_					0	0	0			REV__ENSG00000175166|ENST00000310118|PSMD2	REV__ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	HCT116MG_D190212_S2	2	584.679931640625	2	584.837862	1167.66117	0.51332	0.00030021	0.87081	0.00050928	1.3841	0.00080949	584.8383808985475	54.927	0.20512	54.739	54.611	54.816	-0.18797					5	3	2	0	0	0	0.70908	1	21131	21131		29.082	6.3453	1	28077000	+		20444	13505	12997	13054	19637	19637					0.08404774943119264
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S3	3	1067.490478515625	1	1067.48915	1066.48187	0.62095	0.00066286	-0.03985	-4.254E-05	0.5811	0.00062032	1067.4890457557417	42.63	0.26048	42.327	42.196	42.457	-0.30352					7	4	2	0	0	0	0.0063744	1	15896	15896		125.62	13.031	1	14182000			20445	5321	12998	13055	19638	19638					-0.04871154135480538
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S4	4	1067.4893798828125	1	1067.48915	1066.48187	0.57457	0.00061335	-0.21212	-0.00022643	0.36246	0.00038692	1067.4890720120611	42.707	0.20234	42.332	42.202	42.405	-0.37493					5	3	2	0	0	0	0.031005	1	15712	15712		85.357	10.934	1	2351100			20446	5321	12998	13055	19639	19639					-0.04871154135480538
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1067.48915	1066.48187	0.48292	0.00051551	-0.6145	-0.00065598	-0.13158	-0.00014046	1067.4888081943752	42.357	0.1562	42.357	42.226	42.383	0	0.018022	-0.00039687	NaN	125.62	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5029800			20447	5321	12998	13055							-0.04871154135480538
LTDNGRHITY	10	Unmodified	_LTDNGRHITY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	HCT116MG_D190212_S1	1	595.3013916015625	2	595.301644	1188.58874	0.43689	0.00026008	0.083689	4.982E-05	0.52058	0.0003099	595.301675398758	25.319	0.26056	25.319	25.144	25.405	0					8	4	3	0	0	0	0.084931	1	9124	9124		77.049	38.897	1	11025000			20448	1880	12999	13056	19640	19640					0.0019844086957618856
LTDNGRHITY	10	Unmodified	_LTDNGRHITY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	HCT116MG_D190212_S1	1	397.2035217285156	3	397.203522	1188.58874	-0.24005	-9.5348E-05	1.0429	0.00041425	0.80288	0.00031891	397.2040935564021	25.327	0.26056	25.327	25.144	25.405	0					6	4	2	0	0	0	0.72406	1	9135	9135		12.228	6.4442	1	7252100			20449	1880	12999	13056	19641	19641					0.0019844086957618856
LTDNGRHITY	10	Unmodified	_LTDNGRHITY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	HCT116MG_D190212_S2	2	595.302001953125	2	595.301644	1188.58874	0.64327	0.00038294	0.36941	0.00021991	1.0127	0.00060285	595.3016365354699	25.793	0.25906	25.424	25.239	25.498	-0.36914					11	4	3	0	0	0	0.0096989	1	9308	9308		150.62	90.229	1	36747000			20450	1880	12999	13056	19642	19642					0.0019844086957618856
LTDNGRHITY	10	Unmodified	_LTDNGRHITY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	HCT116MG_D190212_S2	2	397.20361328125	3	397.203522	1188.58874	-0.0095711	-3.8017E-06	0.54636	0.00021701	0.53679	0.00021321	397.2036798776829	25.79	0.31113	25.42	25.187	25.498	-0.36914					7	5	2	0	0	0	0.13161	1	9315	9315		51.765	15.37	1	23172000			20451	1880	12999	13056	19643	19643					0.0019844086957618856
LTDPDGALAK	10	Unmodified	_LTDPDGALAK_					0	0	0		ENST00000552390.5_1_12:57926966-57928919:-|nuORF;DCTN2|p.D201Rfs*2|1|0.39|ENSG00000175203|chr12:57534022-57534023|-/G|frameshift_variant;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000551872.1_1_12:57927977-57928175:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	500.7693176269531	2	500.769114	999.523675	0.37886	0.00018972	0.12858	6.4388E-05	0.50744	0.00025411	500.7690809625756	27.567	0.25822	27.567	27.438	27.696	0					10	4	3	0	0	0	0.112	1	10038	10038		71.708	27.85	1	13232000			20452	653	13000	13057	19644	19644					0.023894463437159175
LTDPDGALAK	10	Unmodified	_LTDPDGALAK_					0	0	0		ENST00000552390.5_1_12:57926966-57928919:-|nuORF;DCTN2|p.D201Rfs*2|1|0.39|ENSG00000175203|chr12:57534022-57534023|-/G|frameshift_variant;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000551872.1_1_12:57927977-57928175:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MSMS	HCT116MG_D190212_S2	2	500.7752685546875	2	500.769114	999.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.898	1	27.556	27.056	28.056	-0.34201								0	0	0	0.050723	1	10154	10154		100.09	30.986	1				20453	653	13000	13057	19645	19645					0.023894463437159175
LTDPDGALAK	10	Unmodified	_LTDPDGALAK_					0	0	0		ENST00000552390.5_1_12:57926966-57928919:-|nuORF;DCTN2|p.D201Rfs*2|1|0.39|ENSG00000175203|chr12:57534022-57534023|-/G|frameshift_variant;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000551872.1_1_12:57927977-57928175:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	500.7745666503906	2	500.769114	999.523675	0.51468	0.00025773	-0.10771	-5.3938E-05	0.40697	0.0002038	500.76885560663385	27.887	0.41614	27.699	27.517	27.933	-0.18847					15	7	3	0	0	0	0.04605	1	10044	10044		90.135	33.958	1	26998000			20454	653	13000	13057	19646	19646					0.023894463437159175
LTDPDGALAK	10	Unmodified	_LTDPDGALAK_					0	0	0		ENST00000552390.5_1_12:57926966-57928919:-|nuORF;DCTN2|p.D201Rfs*2|1|0.39|ENSG00000175203|chr12:57534022-57534023|-/G|frameshift_variant;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000551872.1_1_12:57927977-57928175:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	500.76861572265625	2	500.769114	999.523675	0.37761	0.0001891	-0.16949	-8.4873E-05	0.20812	0.00010422	500.76894564370264	28.042	0.36383	27.714	27.547	27.911	-0.32858					10	6	2	0	0	0	0.025427	1	10076	10076		110.55	37.585	1	8805100			20455	653	13000	13057	19647	19647					0.023894463437159175
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	HCT116MG_D190212_S1	1	568.7774047851562	2	568.777136	1135.53972	0.7079	0.00040264	-0.85323	-0.0004853	-0.14533	-8.2662E-05	568.776884255412	41.529	0.46851	41.529	41.237	41.706	0					18	8	3	0	0	0	0.010123	1	15611	15611		148.27	106.43	1	22557000			20456	5239	13001	13058	19648	19648					-0.022628922100466298
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	HCT116MG_D190212_S1	1	1136.548095703125	1	1136.547	1135.53972	0.96497	0.0010967	-0.33431	-0.00037996	0.63066	0.00071678	1136.5466850269243	41.524	0.41668	41.524	41.289	41.706	0					16	7	3	0	0	0	0.00034544	1	15624	15624		189.73	135.9	1	14909000			20457	5239	13001	13058	19649	19649					-0.022628922100466298
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	HCT116MG_D190212_S2	2	568.7777709960938	2	568.777136	1135.53972	0.55813	0.00031745	-0.73792	-0.00041971	-0.17979	-0.00010226	568.7771075179872	41.559	0.51425	41.491	41.242	41.756	-0.068199					28	9	4	0	0	0	0.0026164	2	15681	15681;15737		173.69	122.06	1	109660000			20458	5239	13001	13058	19650;19651	19650					-0.022628922100466298
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	HCT116MG_D190212_S2	2	1136.549072265625	1	1136.547	1135.53972	0.74464	0.00084631	-0.23212	-0.00026381	0.51252	0.0005825	1136.5470742318316	41.53	0.51425	41.462	41.242	41.756	-0.068195					23	9	3	0	0	0	0.00034544	1	15686	15686		189.73	135.9	1	65262000			20459	5239	13001	13058	19652	19652					-0.022628922100466298
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	HCT116MG_D190212_S3	3	568.7766723632812	2	568.777136	1135.53972	0.30676	0.00017448	-0.76885	-0.0004373	-0.46209	-0.00026282	568.7768869848269	41.778	0.37323	41.476	41.303	41.677	-0.30257					14	10	2	0	0	0	0.2521	1	15498	15498		54.774	34.32	1	10373000			20460	5239	13001	13058	19653	19653					-0.022628922100466298
LTDPMFRGIY	10	Unmodified	_LTDPMFRGIY_					0	0	0		ENSG00000147687|ENST00000276692|TATDN1;ENST00000522280.1_1_8:125534346-125551287:-|nuORF	ENSG00000147687|ENST00000276692|TATDN1	ENSG00000147687|ENST00000276692|TATDN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	606.3698120117188	2	606.807716	1211.60088	0.77442	0.00046992	0.048485	2.9421E-05	0.8229	0.00049934	606.8075047240882	51.838	0.20523	51.655	51.527	51.732	-0.18369					6	3	2	0	0	0	0.30806	1	19922	19922		9.544	4.2471	1	13859000			20461	3998	13002	13059	19654	19654					0.00354341288402793
LTDPYYLWRKS	11	Unmodified	_LTDPYYLWRKS_					0	0	0		SLC26A9|p.T608Pfs*62|1|0.36|ENSG00000174502|chr1:205921800-205921800|G/-|frameshift_variant;ENSG00000174502|ENST00000367135|SLC26A9;nc|ENSG00000174502|Q7LBE3-2|SLC26A9	SLC26A9|p.T608Pfs*62|1|0.36|ENSG00000174502|chr1:205921800-205921800|G/-|frameshift_variant	SLC26A9|p.T608Pfs*62|1|0.36|ENSG00000174502|chr1:205921800-205921800|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	721.37744140625	2	721.377352	1440.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.784	1	43.706	43.206	44.206	-0.078373								0	0	0	0.92235	1	16611	16611		17.113	4.8722	1				20462	5334	13003	13060	19655	19655					0.03741002177412156
LTDRGVMSY	9	Unmodified	_LTDRGVMSY_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	HCT116MG_D190212_S2	2	521.3070678710938	2	521.255317	1040.49608	0.48011	0.00025026	0.87975	0.00045857	1.3599	0.00070883	521.2562203999918	34.822	0.51804	34.664	34.45	34.968	-0.15834					12	9	2	0	0	0	0.043159	2	12950	12950;12971		78.06	35.236	1	20676000			20463	2935;9448	13004	13061	19656;19657	19656					-0.022547801881728446
LTDRGVMSY	9	Unmodified	_LTDRGVMSY_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;IRF3|p.V261A|1|0.25|ENSG00000126456|chr19:49662148-49662148|A/G|missense_variant;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	HCT116MG_D190212_S3	3	521.2562866210938	2	521.255317	1040.49608	0.28664	0.00014941	1.2519	0.00065255	1.5385	0.00080196	521.2564141164182	35.058	0.46717	34.761	34.44	34.907	-0.29707					11	8	2	0	0	0	0.043159	1	12921	12921		78.06	34.288	1	5085900			20464	2935;9448	13004	13061	19658	19658					-0.022547801881728446
LTDSSLKY	8	Unmodified	_LTDSSLKY_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S1	1	463.74530029296875	2	463.745108	925.475663	0.2844	0.00013189	0.41864	0.00019414	0.70304	0.00032603	463.74491050388974	31.414	0.46847	31.414	31.232	31.7	0					11	8	2	0	0	0	0.21275	1	11568	11568		71.134	35.089	1	6699700			20465	1666	13005	13062	19659	19659					0.009943724236563867
LTDSSLKY	8	Unmodified	_LTDSSLKY_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S2	2	463.7451171875	2	463.745108	925.475663	0.42407	0.00019666	-0.035046	-1.6252E-05	0.38902	0.00018041	463.7450166378668	31.629	0.25963	31.38	31.198	31.458	-0.24883					8	4	2	0	0	0	0.094591	1	11657	11657		96.285	46.352	1	61785000			20466	1666	13005	13062	19660	19660					0.009943724236563867
LTDSSLKY	8	Unmodified	_LTDSSLKY_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S2	2	926.4852294921875	1	926.482939	925.475663	1.2457	0.0011541	0.13284	0.00012308	1.3785	0.0012772	926.4832850976528	31.61	0.20799	31.361	31.25	31.458	-0.24883					5	3	2	0	0	0	0.040608	1	11679	11679		134.3	63.162	1	12316000			20467	1666	13005	13062	19661	19661					0.009943724236563867
LTDSSLKY	8	Unmodified	_LTDSSLKY_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MULTI-MSMS	HCT116MG_D190212_S3	3	463.744873046875	2	463.745108	925.475663	0.29461	0.00013662	-0.31662	-0.00014683	-0.022008	-1.0206E-05	463.74480145573307	31.726	0.36447	31.456	31.326	31.69	-0.27028					12	6	3	0	0	0	0.19352	1	11606	11606		74.929	36.955	1	15865000			20468	1666	13005	13062	19662	19662					0.009943724236563867
LTDSSLKY	8	Unmodified	_LTDSSLKY_					0	0	0		nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-5|TRIOBP	MSMS	HCT116MG_D190212_S4	4	463.7445373535156	2	463.745108	925.475663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.904	1	31.529	31.029	32.029	-0.37529								0	0	0	0.73727	1	11598	11598		27.629	0.74515	1				20469	1666	13005	13062	19663	19663					0.009943724236563867
LTDSSTERRSP	11	Unmodified	_LTDSSTERRSP_					0	0	0			REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1	REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	624.8133544921875	2	624.812573	1247.61059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.398	1	39.398	38.898	39.898	0								0	0	0	0.9465	1	14778	14778		8.1555	1.9497	1		+		20470	17560	13006	13063	19664	19664					-0.0033079917252507585
LTDTFTAYY	9	Unmodified	_LTDTFTAYY_					0	0	0		nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;TPGS2|p.K264Efs*26|1|0.21|ENSG00000134779|chr18:36796919-36796920|-/T|frameshift_variant;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-3|TPGS2	nc|ENSG00000134779|Q68CL5-3|TPGS2	MULTI-MSMS	HCT116MG_D190212_S2	2	1094.5062255859375	1	1094.50407	1093.49679	0.55189	0.00060404	-0.093421	-0.00010225	0.45847	0.00050179	1094.5038812589353	50.215	0.25745	50.043	49.934	50.191	-0.17191					7	4	2	0	0	0	0.043314	1	19266	19266		77.984	31.963	1	27311000			20471	3307	13007	13064	19665	19665					-0.046216622674592145
LTDTPKATSY	10	Unmodified	_LTDTPKATSY_					0	0	0		ENST00000466854.5_1_3:122081873-122084420:-|nuORF;ENST00000460810.1_1_3:122081873-122084409:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	548.7799072265625	2	548.779679	1095.5448	0.39585	0.00021724	-0.047743	-2.62E-05	0.34811	0.00019103	548.7794390100142	25.164	0.41853	25.164	24.882	25.301	0					13	7	3	0	0	0	0.45124	1	9066	9066		38.615	7.3464	1	7558600			20472	8044	13008	13065	19666	19666					0.0008541165257156536
LTDTPKATSY	10	Unmodified	_LTDTPKATSY_					0	0	0		ENST00000466854.5_1_3:122081873-122084420:-|nuORF;ENST00000460810.1_1_3:122081873-122084409:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	548.7798461914062	2	548.779679	1095.5448	0.36198	0.00019865	0.12933	7.0975E-05	0.49131	0.00026962	548.7793827881413	25.485	0.5721	25.115	24.822	25.394	-0.36914					21	10	3	0	0	0	0.016449	1	9199	9199		128.58	55.611	1	33456000			20473	8044	13008	13065	19667	19667					0.0008541165257156536
LTDTPKATSY	10	Unmodified	_LTDTPKATSY_					0	0	0		ENST00000466854.5_1_3:122081873-122084420:-|nuORF;ENST00000460810.1_1_3:122081873-122084409:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	548.7797241210938	2	548.779679	1095.5448	0.52435	0.00028775	-0.36469	-0.00020013	0.15966	8.7616E-05	548.7793444924973	25.347	0.52087	25.241	24.891	25.412	-0.10618					17	9	3	0	0	0	0.011728	2	9042	9026;9042		139.78	50.828	1	10051000			20474	8044	13008	13065	19668;19669	19669					0.0008541165257156536
LTDTPKATSY	10	Unmodified	_LTDTPKATSY_					0	0	0		ENST00000466854.5_1_3:122081873-122084420:-|nuORF;ENST00000460810.1_1_3:122081873-122084409:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	ENST00000466854.5_1_3:122081873-122084420:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	548.779679	1095.5448	0.67874	0.00037248	-1.1569	-0.00063489	-0.47818	-0.00026242	548.7791479630773	25.536	0.46823	25.256	24.954	25.422	-0.27958	0.062116	-0.00096336	NaN	139.78	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4486100			20475	8044	13008	13065							0.0008541165257156536
LTDTQNAQY	9	Unmodified	_LTDTQNAQY_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2461547851562	2	527.246003	1052.47745	0.49251	0.00025967	-0.012592	-6.639E-06	0.47991	0.00025303	527.2459544788388	25.023	0.36407	24.648	24.504	24.868	-0.37521					10	6	2	0	0	0	0.0090481	1	9011	9011		115.69	57.013	1	20144000			20476	2259	13009	13066	19670	19670					-0.046686185583666884
LTDTQNAQY	9	Unmodified	_LTDTQNAQY_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	HCT116MG_D190212_S3	3	527.245849609375	2	527.246003	1052.47745	0.49357	0.00026023	-0.98722	-0.00052051	-0.49365	-0.00026028	527.2451495154294	24.919	0.72906	24.835	24.601	25.33	-0.083694					20	13	3	0	0	0	0.39063	1	8855	8855		23.148	8.5667	1	12199000			20477	2259	13009	13066	19671	19671					-0.046686185583666884
LTDVREQNKY	10	Unmodified	_LTDVREQNKY_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5;ATAD5|p.L1662I|1|0.37|ENSG00000176208|chr17:30893837-30893837|C/A|missense_variant	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	HCT116MG_D190212_S2	2	633.3280029296875	2	633.327859	1264.64116	0.50265	0.00031834	-0.041243	-2.612E-05	0.46141	0.00029222	633.3277028945483	22.098	0.26038	21.713	21.583	21.844	-0.38503					7	4	2	0	0	0	0.019431	1	7837	7837		121.5	66.269	1	36440000			20478	5412	13010	13067	19672	19672					0.01942979212526552
LTDVREQNKY	10	Unmodified	_LTDVREQNKY_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5;ATAD5|p.L1662I|1|0.37|ENSG00000176208|chr17:30893837-30893837|C/A|missense_variant	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-SECPEP	HCT116MG_D190212_S2	2	423.2581787109375	3	422.554331	1264.64116	0.10026	4.2364E-05	0.083166	3.5142E-05	0.18342	7.7507E-05	422.8887761505312	22.094	0.20832	21.709	21.583	21.792	-0.38503					8	3	3	0	0	0	0.29156	1	7793	7793		16.275	16.275	1	16254000			20479	5412	13010	13067	19673	19673					0.01942979212526552
LTDVREQNKY	10	Unmodified	_LTDVREQNKY_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5;ATAD5|p.L1662I|1|0.37|ENSG00000176208|chr17:30893837-30893837|C/A|missense_variant	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-MATCH	HCT116MG_D190212_S3	3		2	633.327859	1264.64116	0.43972	0.00027849	0.54822	0.0003472	0.98794	0.00062569	633.3281398822445	21.543	0.15855	21.562	21.43	21.588	0.018446	-0.075822	0.00056122	NaN	121.5	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3128300			20480	5412	13010	13067							0.01942979212526552
LTDVREQNKY	10	Unmodified	_LTDVREQNKY_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5;ATAD5|p.L1662I|1|0.37|ENSG00000176208|chr17:30893837-30893837|C/A|missense_variant	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-MATCH	HCT116MG_D190212_S3	3		3	422.554331	1264.64116	0.054051	2.284E-05	-0.46754	-0.00019756	-0.41348	-0.00017472	422.5540993086849	21.543	0.21154	21.562	21.377	21.588	0.018446	-0.07352	-0.00047038	NaN	16.275	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5093300			20481	5412	13010	13067							0.01942979212526552
LTDYDIRFY	9	Unmodified	_LTDYDIRFY_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;CSNK2A3|p.Y182Sfs*10|1|0.05|ENSG00000254598|chr11:11352575-11352576|-/CTTTCGG|frameshift_variant	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S1	1	603.2957763671875	2	603.295496	1204.57644	0.38207	0.0002305	-0.29763	-0.00017956	0.084447	5.0946E-05	603.295392246901	49.725	0.30995	49.725	49.543	49.853	0					10	5	3	0	0	0	0.011082	1	18977	18977		110.67	56.842	1	30590000			20482	1770	13011	13068	19674	19674					-0.017665955934717203
LTDYDIRFY	9	Unmodified	_LTDYDIRFY_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;CSNK2A3|p.Y182Sfs*10|1|0.05|ENSG00000254598|chr11:11352575-11352576|-/CTTTCGG|frameshift_variant	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S4	4	603.7831420898438	2	603.295496	1204.57644	1.0829	0.00065331	-0.64639	-0.00038996	0.43651	0.00026335	603.2947769145417	50.183	0.20807	49.824	49.689	49.897	-0.35878					8	3	3	0	0	0	0.71345	1	18587	18587		4.3292	0	1	2899900			20483	1770	13011	13068	19675	19675					-0.017665955934717203
LTDYDIRFY	9	Unmodified	_LTDYDIRFY_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;CSNK2A3|p.Y182Sfs*10|1|0.05|ENSG00000254598|chr11:11352575-11352576|-/CTTTCGG|frameshift_variant	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MSMS	HCT116MG_D190212_S4	4	603.2954711914062	2	603.295496	1204.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.327	1	49.968	49.468	50.468	-0.35878								0	0	0	0.76592	1	18695	18695		15.248	3.0078	1				20484	1770	13011	13068	19676	19676					-0.017665955934717203
LTDYDIRFY	9	Unmodified	_LTDYDIRFY_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;CSNK2A3|p.Y182Sfs*10|1|0.05|ENSG00000254598|chr11:11352575-11352576|-/CTTTCGG|frameshift_variant	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	603.295496	1204.57644	0.47413	0.00028604	-0.24666	-0.00014881	0.22746	0.00013723	603.2954598558487	50.121	0.31218	49.806	49.707	50.019	-0.31524	0.020863	0.00013689	NaN	110.67	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5773500			20485	1770	13011	13068							-0.017665955934717203
LTDYDIRFY	9	Unmodified	_LTDYDIRFY_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;CSNK2A3|p.Y182Sfs*10|1|0.05|ENSG00000254598|chr11:11352575-11352576|-/CTTTCGG|frameshift_variant	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	603.295496	1204.57644	1.0829	0.00065331	-0.64639	-0.00038996	0.43651	0.00026335	603.2947769145417	50.183	0.20807	49.824	49.689	49.897	-0.35878	0.039335	-0.00034541	NaN	110.67	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2899900			20486	1770	13011	13068							-0.017665955934717203
LTEAEGWHFF	10	Unmodified	_LTEAEGWHFF_					0	0	0		ENST00000571074.5_1_17:7529767-7530880:-|nuORF;ENSG00000141504|ENST00000269298|SAT2	ENST00000571074.5_1_17:7529767-7530880:-|nuORF	ENST00000571074.5_1_17:7529767-7530880:-|nuORF	MSMS	HCT116MG_D190212_S1	1	412.86279296875	3	412.860984	1235.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.068	1	11.068	10.568	11.568	0								0	0	0	0.97045	1	3451	3451		0.15932	0.01943	1				20487	3724	13012	13069	19677	19677					-0.04723462390688837
LTEALGPE	8	Unmodified	_LTEALGPE_					0	0	0			REV__ENSG00000158955|ENST00000290015|WNT9B	REV__ENSG00000158955|ENST00000290015|WNT9B	MSMS	HCT116MG_D190212_S4	4	415.21844482421875	2	415.218726	828.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.483	1	26.182	25.682	26.682	-0.30087								0	0	0	0.8837	1	9436	9436		12.532	3.1841	1		+		20488	12793	13013	13070	19678	19678					0.0018241436084736051
LTEDEITP	8	Unmodified	_LTEDEITP_					0	0	0			REV__CCNB3|p.T485Hfs*37|1|0.28|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant	REV__CCNB3|p.T485Hfs*37|1|0.28|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	459.2267761230469	2	459.226748	916.438943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.504	1	27.504	27.004	28.004	0								0	0	0	0.8837	1	9983	9983		9.3474	3.587	1		+		20489	10121	13014	13071	19679	19679					-0.022619241929191958
LTEDKETLQY	10	Unmodified	_LTEDKETLQY_					0	0	0		TUBGCP2|p.H261Qfs*13|1|0.5|ENSG00000130640|chr10:133293603-133293603|G/-|frameshift_variant;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	TUBGCP2|p.H261Qfs*13|1|0.5|ENSG00000130640|chr10:133293603-133293603|G/-|frameshift_variant	TUBGCP2|p.H261Qfs*13|1|0.5|ENSG00000130640|chr10:133293603-133293603|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	620.7780151367188	2	620.3088	1238.60305	0.45261	0.00028076	-0.42891	-0.00026606	0.023697	1.4699E-05	620.3087862427249	32.667	0.20856	32.456	32.325	32.534	-0.21135					5	3	2	0	0	0	0.23445	1	12089	12089		39.213	25.598	1	9085900			20490	3090	13015	13072	19680	19680					-0.006709514927933924
LTEITKGWLY	10	Unmodified	_LTEITKGWLY_					0	0	0		LRIG3|p.A746Cfs*16|2|0.45|ENSG00000139263|chr12:58877700-58877701|-/A|frameshift_variant;nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3	LRIG3|p.A746Cfs*16|2|0.45|ENSG00000139263|chr12:58877700-58877701|-/A|frameshift_variant	LRIG3|p.A746Cfs*16|2|0.45|ENSG00000139263|chr12:58877700-58877701|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	612.3378295898438	2	612.337164	1222.65977	0.54338	0.00033273	0.31352	0.00019198	0.8569	0.00052471	612.3374560690615	52.664	0.20793	52.477	52.347	52.555	-0.18725					8	3	3	0	0	0	0.079802	1	20259	20259		78.06	45.755	1	21859000			20491	3616	13016	13073	19681	19681					0.05735140854380916
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;nc|ENSG00000127054|Q5TA45-3|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	HCT116MG_D190212_S1	1	569.7800903320312	2	569.780013	1137.54547	0.30465	0.00017358	0.17551	0.0001	0.48016	0.00027359	569.780034971395	23.028	0.3641	23.028	22.898	23.262	0					16	6	4	0	0	0	4.893E-05	1	8183	8183		208.15	146.79	1	113010000			20492	2955	13017	13074	19682	19682					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;nc|ENSG00000127054|Q5TA45-3|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	HCT116MG_D190212_S1	1	380.5233459472656	3	380.189101	1137.54547	-0.15772	-5.9965E-05	0.16569	6.2992E-05	0.007963	3.0274E-06	380.18907672512023	23.028	0.3122	23.028	22.845	23.158	0					13	5	3	0	0	0	0.049545	1	8188	8188		59.368	40.006	1	45474000			20493	2955	13017	13074	19683	19683					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;nc|ENSG00000127054|Q5TA45-3|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	HCT116MG_D190212_S2	2	569.7801513671875	2	569.780013	1137.54547	0.40175	0.00022891	0.062166	3.5421E-05	0.46392	0.00026433	569.7799692137414	23.657	0.36466	23.274	23.143	23.508	-0.38324					22	6	5	0	0	0	4.893E-05	1	8444	8444		208.15	146.79	1	279610000			20494	2955	13017	13074	19684	19684					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;nc|ENSG00000127054|Q5TA45-3|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-2|INTS11	MULTI-MSMS	HCT116MG_D190212_S2	2	380.1888427734375	3	380.189101	1137.54547	-0.15761	-5.992E-05	0.14366	5.4619E-05	-0.013945	-5.3016E-06	380.1890985463652	23.657	0.41681	23.274	23.143	23.56	-0.38324					14	7	3	0	0	0	0.057285	1	8448	8448		55.503	29.482	1	85120000			20495	2955	13017	13074	19685	19685					-0.017797489077111095
LTELAAPHRSF	11	Unmodified	_LTELAAPHRSF_					0	0	0			REV__ENST00000322886.11_2_12:77417874-77417922:-|nuORF	REV__ENST00000322886.11_2_12:77417874-77417922:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	622.6103515625	2	621.335487	1240.65642	0.32494	0.0002019	4.2356	0.0026317	4.5605	0.0028336	621.3372924739291	53.33	0.25764	53.14	52.966	53.223	-0.18922					10	4	3	0	0	0	0.70991	1	20442	20442		18.146	5.1039	1	18483000	+		20496	14891	13018	13075	19686	19686					0.04571890800343681
LTELIDRY	8	Unmodified	_LTELIDRY_					0	0	0		ENST00000487962.5_1_2:242435079-242438851:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000495143.5_1_2:242438052-242438731:-|nuORF;ENST00000478403.5_1_2:242436769-242438604:-|nuORF;ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24	ENST00000487962.5_1_2:242435079-242438851:-|nuORF	ENST00000487962.5_1_2:242435079-242438851:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	511.7800598144531	2	511.779482	1021.54441	0.20188	0.00010332	0.23168	0.00011857	0.43356	0.00022189	511.7797255381449	40.98	0.23506	40.98	40.794	41.029	0					5	4	2	0	0	0	0.31597	1	15434	15434		57.722	0	1	11175000			20497	2482	13019	13076	19687	19687					0.03450036723370431
LTELIDRY	8	Unmodified	_LTELIDRY_					0	0	0		ENST00000487962.5_1_2:242435079-242438851:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000495143.5_1_2:242438052-242438731:-|nuORF;ENST00000478403.5_1_2:242436769-242438604:-|nuORF;ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24	ENST00000487962.5_1_2:242435079-242438851:-|nuORF	ENST00000487962.5_1_2:242435079-242438851:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	511.7801208496094	2	511.779482	1021.54441	0.32349	0.00016556	-0.91396	-0.00046774	-0.59047	-0.00030219	511.77985613728583	40.907	0.41388	40.837	40.622	41.036	-0.069626					18	7	3	0	0	0	0.047269	1	15467	15467		126.57	0	1	38384000			20498	2482	13019	13076	19688	19688					0.03450036723370431
LTELIDRY	8	Unmodified	_LTELIDRY_					0	0	0		ENST00000487962.5_1_2:242435079-242438851:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000495143.5_1_2:242438052-242438731:-|nuORF;ENST00000478403.5_1_2:242436769-242438604:-|nuORF;ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24	ENST00000487962.5_1_2:242435079-242438851:-|nuORF	ENST00000487962.5_1_2:242435079-242438851:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	511.779482	1021.54441	0.20188	0.00010332	0.23168	0.00011857	0.43356	0.00022189	511.7797255381449	40.98	0.23506	40.98	40.794	41.029	0	0.071277	0.00013269	NaN	126.57	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11175000			20499	2482	13019	13076							0.03450036723370431
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1123.52978515625	1	1123.53062	1122.52334	0.70909	0.00079669	-0.51842	-0.00058246	0.19067	0.00021423	1123.5295905627797	54.465	0.20287	54.465	54.333	54.536	0					8	3	3	0	0	0	0.007119	1	20909	20909		120.45	56.214	1	37728000			20500	5254	13020	13077	19689	19689					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MSMS	HCT116MG_D190212_S1	1	562.2689819335938	2	562.268947	1122.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.538	1	54.538	54.038	55.038	0								0	0	0	0.047256	1	20917	20917		71.134	26.727	1				20501	5254	13020	13077	19690	19690					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1123.53173828125	1	1123.53062	1122.52334	0.56337	0.00063296	-0.33156	-0.00037252	0.23181	0.00026044	1123.530136338854	54.773	0.30779	54.585	54.406	54.714	-0.18797					17	5	4	0	0	0	0.007119	1	21084	21084		120.45	56.214	1	237530000			20502	5254	13020	13077	19691	19691					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	562.2689208984375	2	562.268947	1122.52334	0.42348	0.00023811	-0.40318	-0.0002267	0.020292	1.141E-05	562.2685827400712	54.731	0.46025	54.542	54.252	54.713	-0.18914					15	8	3	0	0	0	0.004194	1	21089	21089		147.83	99.485	1	89569000			20503	5254	13020	13077	19692	19692					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1123.5311279296875	1	1123.53062	1122.52334	0.38131	0.00042841	0.40435	0.0004543	0.78566	0.00088271	1123.530771601513	54.873	0.31352	54.577	54.4	54.713	-0.29587					13	5	4	0	0	0	0.007119	1	20806	20806		120.45	62.979	1	12875000			20504	5254	13020	13077	19693	19693					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	ENST00000557543.5_1_14:23299153-23299471:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	562.2687377929688	2	562.268947	1122.52334	0.38674	0.00021745	0.081925	4.6064E-05	0.46866	0.00026351	562.2687419203911	54.874	0.31352	54.578	54.4	54.713	-0.29587					12	5	3	0	0	0	0.0060607	1	20818	20818		128.37	90.391	1	7945200			20505	5254	13020	13077	19694	19694					-0.033019733761420866
LTEPTGLLY	9	Unmodified	_LTEPTGLLY_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	HCT116MG_D190212_S2	2	1006.5465087890625	1	1006.54554	1005.53826	0.79191	0.00079709	0.47387	0.00047698	1.2658	0.0012741	1006.5453088522448	52.227	0.56673	52.04	51.78	52.347	-0.18726					25	10	3	0	0	0	0.013464	1	20012	20012		104.8	0	1	32694000			20506	5027	13021	13078	19695	19695					0.03571518491844472
LTEPTGLLY	9	Unmodified	_LTEPTGLLY_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	HCT116MG_D190212_S3	3	1007.5492553710938	1	1006.54554	1005.53826	0.65271	0.00065698	-0.045834	-4.6134E-05	0.60687	0.00061084	1006.545460643908	52.371	0.57517	52.064	51.882	52.457	-0.30639					18	10	2	0	0	0	0.13706	1	19815	19815		50.855	0	1	4112700			20507	5027	13021	13078	19696	19696					0.03571518491844472
LTEQLEYRH	9	Unmodified	_LTEQLEYRH_					0	0	0			REV__nc|ENSG00000074590|O60285-2|NUAK1	REV__nc|ENSG00000074590|O60285-2|NUAK1	MSMS	HCT116MG_D190212_S4	4	396.872802734375	3	396.871772	1187.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.342	1	28.993	28.493	29.493	-0.34921								0	0	0	0.76739	1	10592	10592		6.6304	1.7334	1		+		20508	10799	13022	13079	19697	19697					0.007193250123236794
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14;RBM4|p.A184T|1|0.46|ENSG00000173933|chr11:66643587-66643587|G/A|missense_variant	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S1	1	594.2646484375	2	594.264393	1186.51423	0.62996	0.00037437	0.078049	4.6382E-05	0.70801	0.00042075	594.2643862882608	30.322	0.61711	30.322	30.146	30.763	0					34	11	4	0	0	0	0.0042464	2	11117	11106;11117		147.06	75.137	1	167020000			20509	5313	13023	13080	19698;19699	19699					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14;RBM4|p.A184T|1|0.46|ENSG00000173933|chr11:66643587-66643587|G/A|missense_variant	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S1	1	1187.5223388671875	1	1187.52151	1186.51423	0.65427	0.00077697	0.24467	0.00029055	0.89894	0.0010675	1187.5215499045428	30.321	0.25898	30.321	30.192	30.451	0					11	4	3	0	0	0	0.0057285	1	11123	11123		131.27	51.671	1	20876000			20510	5313	13023	13080	19700	19700					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14;RBM4|p.A184T|1|0.46|ENSG00000173933|chr11:66643587-66643587|G/A|missense_variant	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S2	2	594.2655029296875	2	594.264393	1186.51423	0.39103	0.00023238	0.10978	6.5236E-05	0.50081	0.00029761	594.2644578749891	30.492	0.67118	30.208	30.079	30.75	-0.28453					43	12	6	0	0	0	0.0044301	2	11213	11213;11396		144.35	72.428	1	1135800000			20511	5313	13023	13080	19701;19702	19701					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14;RBM4|p.A184T|1|0.46|ENSG00000173933|chr11:66643587-66643587|G/A|missense_variant	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S2	2	1187.521240234375	1	1187.52151	1186.51423	0.24318	0.00028879	-0.0057567	-6.8362E-06	0.23743	0.00028195	1187.5214255933647	30.493	0.51506	30.209	30.079	30.594	-0.28453					23	9	4	0	0	0	0.0077497	1	11214	11214		118.89	39.298	1	244600000			20512	5313	13023	13080	19703	19703					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14;RBM4|p.A184T|1|0.46|ENSG00000173933|chr11:66643587-66643587|G/A|missense_variant	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S3	3	594.267333984375	2	594.264393	1186.51423	0.53149	0.00031585	0.0032057	1.905E-06	0.5347	0.00031775	594.2644033309085	30.735	0.62081	30.474	30.297	30.917	-0.26071					39	12	4	0	0	0	0.0042464	1	11164	11164		147.06	65.169	1	515410000			20513	5313	13023	13080	19704	19704					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14;RBM4|p.A184T|1|0.46|ENSG00000173933|chr11:66643587-66643587|G/A|missense_variant	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S3	3	1187.5213623046875	1	1187.52151	1186.51423	0.47434	0.00056329	-0.0090326	-1.0726E-05	0.46531	0.00055257	1187.5213594938057	30.727	0.33278	30.467	30.324	30.656	-0.26071					18	6	4	0	0	0	0.0042464	1	11188	11188		147.06	67.463	1	50041000			20514	5313	13023	13080	19705	19705					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14;RBM4|p.A184T|1|0.46|ENSG00000173933|chr11:66643587-66643587|G/A|missense_variant	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S4	4	594.2648315429688	2	594.264393	1186.51423	0.86373	0.00051329	-0.055378	-3.2909E-05	0.80835	0.00048038	594.2643615828002	30.746	0.62459	30.382	30.249	30.874	-0.36416					37	14	4	0	0	0	0.0057285	1	11101	11101		131.27	77.435	1	133060000			20515	5313	13023	13080	19706	19706					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14;RBM4|p.A184T|1|0.46|ENSG00000173933|chr11:66643587-66643587|G/A|missense_variant	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	HCT116MG_D190212_S4	4	1187.5228271484375	1	1187.52151	1186.51423	0.39299	0.00046668	0.14896	0.00017689	0.54194	0.00064357	1187.522263037943	30.753	0.2261	30.389	30.287	30.513	-0.36416					11	5	3	0	0	0	0.0077497	1	11132	11132		118.89	56.322	1	8119700			20516	5313	13023	13080	19707	19707					-0.07156366732488095
LTEREGALKY	10	Unmodified	_LTEREGALKY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	590.3221435546875	2	590.322045	1178.62954	0.62227	0.00036734	-0.10688	-6.3091E-05	0.5154	0.00030425	590.3219080805969	27.67	0.25917	27.67	27.541	27.8	0					8	4	3	0	0	0	0.034595	1	10055	10055		101.54	51.989	1	13193000			20517	458	13024	13081	19708	19708					0.04736782189183941
LTEREGALKY	10	Unmodified	_LTEREGALKY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	393.88409423828125	3	393.883789	1178.62954	-0.098104	-3.8642E-05	0.22319	8.7913E-05	0.12509	4.9271E-05	393.88388820932227	27.666	0.20709	27.666	27.541	27.748	0					7	3	3	0	0	0	0.50176	1	10059	10059		35.08	11.279	1	11013000			20518	458	13024	13081	19709	19709					0.04736782189183941
LTEREGALKY	10	Unmodified	_LTEREGALKY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	590.3223266601562	2	590.322045	1178.62954	0.60837	0.00035913	0.27937	0.00016492	0.88774	0.00052405	590.3222658136091	28.126	0.31115	27.796	27.615	27.926	-0.32987					10	5	3	0	0	0	0.089898	1	10247	10247		77.049	27.521	1	84230000			20519	458	13024	13081	19710	19710					0.04736782189183941
LTEREGALKY	10	Unmodified	_LTEREGALKY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	393.88372802734375	3	393.883789	1178.62954	0.077278	3.0439E-05	-0.23174	-9.128E-05	-0.15447	-6.0842E-05	393.88366850033515	28.126	0.25925	27.796	27.615	27.874	-0.32987					6	4	2	0	0	0	0.24435	1	10250	10250		55.467	21.835	1	50812000			20520	458	13024	13081	19711	19711					0.04736782189183941
LTEREGALKY	10	Unmodified	_LTEREGALKY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	590.3225708007812	2	590.322045	1178.62954	0.53408	0.00031528	0.1549	9.1441E-05	0.68898	0.00040672	590.32210150589	27.991	0.20814	27.803	27.673	27.881	-0.18847					9	3	3	0	0	0	0.099907	1	10114	10114		74.772	32.816	1	10763000			20521	458	13024	13081	19712	19712					0.04736782189183941
LTEREGALKY	10	Unmodified	_LTEREGALKY_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ADAP1|p.H193Tfs*8|1|0.32|ENSG00000105963|chr7:904197-904197|G/-|frameshift_variant	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	394.21844482421875	3	393.883789	1178.62954	-0.057059	-2.2475E-05	0.022793	8.9777E-06	-0.034266	-1.3497E-05	393.8837289530876	27.97	0.20814	27.781	27.673	27.881	-0.18847					8	3	3	0	0	0	0.50176	1	10119	10119		35.08	9.0823	1	6016000			20522	458	13024	13081	19713	19713					0.04736782189183941
LTESLTPDHTV	11	Unmodified	_LTESLTPDHTV_					0	0	0		ENSG00000242498|ENST00000357484|ARPIN;nc|ENSG00000242498|Q7Z6K5-2|ARPIN	ENSG00000242498|ENST00000357484|ARPIN	ENSG00000242498|ENST00000357484|ARPIN	MSMS	HCT116MG_D190212_S2	2	606.8095092773438	2	606.808968	1211.60338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.573	1	22.188	21.688	22.688	-0.3852								0	0	0	0.93717	1	8003	8003		13.042	0.80181	1				20523	6553	13025	13082	19714	19714					0.006044682270385238
LTEVDNYHFY	10	Unmodified	_LTEVDNYHFY_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S2	2	650.7963256835938	2	650.79586	1299.57717	0.80467	0.00052368	-0.092347	-6.0099E-05	0.71233	0.00046358	650.795937118442	44.54	0.26248	44.455	44.325	44.588	-0.084797					7	4	2	0	0	0	0.025359	1	16941	16941		110.67	74.169	1	35256000			20524	2498	13026	13083	19715	19715					-0.06063800944434661
LTEVDNYHFY	10	Unmodified	_LTEVDNYHFY_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	650.79586	1299.57717	0.60501	0.00039374	-0.60211	-0.00039185	0.0028972	1.8855E-06	650.7958888577207	44.521	0.15791	44.521	44.41	44.568	0	0.033023	-0.00061984	NaN	110.67	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4032300			20525	2498	13026	13083							-0.06063800944434661
LTEVLKVIS	9	Unmodified	_LTEVLKVIS_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-SECPEP	HCT116MG_D190212_S1	1	501.290771484375	2	501.3157	1000.61685	0.50019	0.00025075	-1.2988	-0.00065112	-0.79863	-0.00040036	501.31501809786073	46.311	0.20685	46.311	46.182	46.389	0					5	3	2	0	0	0	0.14889	1	17549	17549		34.402	5.9072	1	6027600	+		20526	14071	13027	13084	19716	19716					0.11656370796947613
LTEVNKAGTQY	11	Unmodified	_LTEVNKAGTQY_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	HCT116MG_D190212_S1	1	612.3170776367188	2	612.31696	1222.61937	0.43304	0.00026516	0.082487	5.0508E-05	0.51553	0.00031567	612.3169702474487	25.013	0.36685	25.013	24.83	25.197	0					15	6	4	0	0	0	3.9535E-10	1	8980	8980		203.78	114.82	1	32376000			20527	5137	13028	13085	19717	19717					0.01696174463972966
LTEVNKAGTQY	11	Unmodified	_LTEVNKAGTQY_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	HCT116MG_D190212_S2	2	612.3172607421875	2	612.31696	1222.61937	0.46997	0.00028777	-0.0084626	-5.1818E-06	0.46151	0.00028259	612.3168397218611	25.373	0.36486	24.998	24.868	25.233	-0.37521					20	6	4	0	0	0	6.4143E-06	1	9136	9136		175.66	96.929	1	213730000			20528	5137	13028	13085	19718	19718					0.01696174463972966
LTEVNKAGTQY	11	Unmodified	_LTEVNKAGTQY_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	HCT116MG_D190212_S3	3	612.31640625	2	612.31696	1222.61937	0.5225	0.00031994	-0.078267	-4.7924E-05	0.44424	0.00027201	612.3168369000491	25.18	0.36499	25.074	24.891	25.256	-0.10618					21	6	4	0	0	0	6.4143E-06	1	8968	8968		175.66	86.703	1	90933000			20529	5137	13028	13085	19719	19719					0.01696174463972966
LTEVNKTGTQY	11	Unmodified	_LTEVNKTGTQY_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	HCT116MG_D190212_S1	1	627.322265625	2	627.322242	1252.62993	0.79576	0.0004992	-0.2725	-0.00017094	0.52326	0.00032825	627.3220144745447	24.654	0.26131	24.654	24.516	24.778	0					10	4	3	0	0	0	1.0173E-07	1	8835	8835		194.76	109.12	1	45195000			20530	2851	13029	13086	19720	19720					0.01372157118407813
LTEVNKTGTQY	11	Unmodified	_LTEVNKTGTQY_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	HCT116MG_D190212_S2	2	627.3226928710938	2	627.322242	1252.62993	0.59113	0.00037083	0.013848	8.687E-06	0.60498	0.00037952	627.3222285904551	25.061	0.41572	24.686	24.504	24.92	-0.37521					25	7	5	0	0	0	1.0173E-07	1	9010	9010		194.76	109.12	1	386880000			20531	2851	13029	13086	19721	19721					0.01372157118407813
LTEVNKTGTQY	11	Unmodified	_LTEVNKTGTQY_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	HCT116MG_D190212_S3	3	627.3226928710938	2	627.322242	1252.62993	0.5097	0.00031974	0.00085948	5.3917E-07	0.51055	0.00032028	627.3222243533148	24.817	0.52064	24.733	24.549	25.07	-0.083694					31	9	5	0	0	0	0.60935	1	8818	8818		34.402	11.665	1	151700000			20532	2851	13029	13086	19722	19722					0.01372157118407813
LTEVNKTGTQY	11	Unmodified	_LTEVNKTGTQY_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	HCT116MG_D190212_S4	4	627.3228149414062	2	627.322242	1252.62993	0.51813	0.00032503	0.034259	2.1492E-05	0.55239	0.00034653	627.3222176294653	25.017	0.312	24.737	24.59	24.902	-0.27958					17	5	4	0	0	0	2.9437E-22	1	8844	8844		245.55	149.43	1	41646000			20533	2851	13029	13086	19723	19723					0.01372157118407813
LTFQRAKNR	9	Unmodified	_LTFQRAKNR_					0	0	0		ENST00000572418.1_1_17:3806502-3807261:-|nuORF	ENST00000572418.1_1_17:3806502-3807261:-|nuORF	ENST00000572418.1_1_17:3806502-3807261:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	567.3196411132812	2	567.330539	1132.64652	0.43338	0.00024587	-1.2797	-0.00072601	-0.84631	-0.00048014	567.329860035083	46.816	0.31165	46.816	46.595	46.907	0					10	5	2	0	0	0	0.24622	1	17731	17731		11.64	5.4345	1	5940800			20534	8901	13030	13087	19724	19724					0.08550747585650242
LTFRWRLFYFN	11	Unmodified	_LTFRWRLFYFN_					0	0	0			REV__AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|21|3|anti-sense	REV__AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|21|3|anti-sense	MULTI-MSMS	HCT116MG_D190212_S4	4	782.419921875	2	781.916978	1561.8194	0.98619	0.00077112	0.76805	0.00060055	1.7542	0.0013717	782.4190148671088	36.508	0.91431	36.123	35.572	36.486	-0.38558					30	17	2	0	0	0	0.74191	2	13238	13238;13490		0.30703	0.03801	1	7685500	+		20535	9924	13031	13088	19725;19726	19725					0.06096693922222585
LTFRWRLFYFN	11	Unmodified	_LTFRWRLFYFN_					0	0	0			REV__AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|21|3|anti-sense	REV__AluSc8_dup7305|chr6:30493012-30493324:+|1.025799963262684|0.0449135051643763|4.51|481.0|21|3|anti-sense	MULTI-SECPEP	HCT116MG_D190212_S4	4	782.419921875	2	781.916978	1561.8194	0.98619	0.00077112	0.76805	0.00060055	1.7542	0.0013717	782.4190148671088	36.508	0.91431	36.123	35.572	36.486	-0.38558					30	17	2	0	0	0	0.36611	1	13238	13238		0.30703	0.30703	1	7685500	+		20536	9924	13031	13088	19727	19727					0.06096693922222585
LTFSAPPLPP	10	Unmodified	_LTFSAPPLPP_					0	0	0			REV__nc|ENSG00000156469|Q96E29-3|MTERF3	REV__nc|ENSG00000156469|Q96E29-3|MTERF3	MSMS	HCT116MG_D190212_S3	3	520.296875	2	520.294768	1038.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.922	1	30.662	30.162	31.162	-0.26071								0	0	0	0.92607	1	11278	11278		10.074	0	1		+		20537	12723	13032	13089	19728	19728					0.05723815108422059
LTFSFPNPP	9	Unmodified	_LTFSFPNPP_					0	0	0			REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|45|3|sense	REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|45|3|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	510.2634582519531	2	510.263468	1018.51238	0.35313	0.00018019	-0.72861	-0.00037178	-0.37548	-0.00019159	510.263516492114	22.733	0.25992	22.348	22.206	22.466	-0.3852					6	4	2	0	0	0	0.30509	1	8100	8100		30.225	3.3412	1	6580600	+		20538	16882	13033	13090	19729	19729					0.003866690402333006
LTGAPPVPQ	9	Unmodified	_LTGAPPVPQ_					0	0	0		nc|ENSG00000197343|Q8N720-2|ZNF655;ENST00000467680.5_1_7:99158164-99159602:+|nuORF	nc|ENSG00000197343|Q8N720-2|ZNF655	nc|ENSG00000197343|Q8N720-2|ZNF655	MSMS	HCT116MG_D190212_S3	3	440.2501525878906	2	440.25036	878.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.511	1	22.492	21.992	22.992	-0.018869								0	0	0	0.59795	1	7901	7901		24.021	3.5669	1				20539	9599	13034	13091	19730	19730					0.04206399868758126
LTGDVGVTI	9	Unmodified	_LTGDVGVTI_					0	0	0			REV__ENSG00000156510|ENST00000354624|HKDC1	REV__ENSG00000156510|ENST00000354624|HKDC1	MSMS	HCT116MG_D190212_S1	1	437.7477111816406	2	437.74765	873.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.404	1	42.404	41.904	42.904	0								0	0	0	0.64498	1	15993	15993		21.747	2.3076	1		+		20540	12725	13035	13092	19731	19731					0.03894676286302001
LTGEIVVY	8	Unmodified	_LTGEIVVY_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	HCT116MG_D190212_S2	2	893.49853515625	1	893.497861	892.490584	1.2017	0.0010738	0.10909	9.7468E-05	1.3108	0.0011712	893.4978227779533	51.993	0.4127	51.81	51.629	52.042	-0.18369					18	7	3	0	0	0	0.083541	1	19943	19943		98.807	20.362	1	87578000			20541	2605	13036	13093	19732	19732					0.04003864291667014
LTGEIVVY	8	Unmodified	_LTGEIVVY_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	HCT116MG_D190212_S3	3	893.4990234375	1	893.497861	892.490584	0.96967	0.0008664	-0.25678	-0.00022944	0.71288	0.00063696	893.4977614464003	52.214	0.30026	51.905	51.735	52.035	-0.30927					8	5	2	0	0	0	0.083541	1	19736	19736		98.807	20.362	1	9936500			20542	2605	13036	13093	19733	19733					0.04003864291667014
LTGEIVVY	8	Unmodified	_LTGEIVVY_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	HCT116MG_D190212_S4	4	893.4989013671875	1	893.497861	892.490584	0.72454	0.00064738	0.35636	0.0003184	1.0809	0.00096578	893.4982618437538	52.199	0.2077	51.853	51.776	51.983	-0.34538					6	3	2	0	0	0	0.13911	1	19477	19477		86.121	11.725	1	3245600			20543	2605	13036	13093	19734	19734					0.04003864291667014
LTGGRWHG	8	Unmodified	_LTGGRWHG_					0	0	0			REV__ENST00000554614.2_1_14:73711044-73711323:-|nuORF	REV__ENST00000554614.2_1_14:73711044-73711323:-|nuORF	MSMS	HCT116MG_D190212_S4	4	442.22943115234375	2	442.230294	882.446034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.349	1	29	28.5	29.5	-0.34921								0	0	0	0.8396	1	10595	10595		19.439	5.5329	1		+		20544	16452	13037	13094	19735	19735					0.0001089798885232085
LTGGTAIKV	9	Unmodified	_LTGGTAIKV_					0	0	0			REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	REV__tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	430.2644958496094	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.956	1	46.642	46.142	47.142	-0.31405								0	0	0	0.76913	1	17620	17620		3.9444	1.6417	1		+		20545	17916	13038	13095	19736	19736					0.08254972902852842
LTGKREETWV	10	Unmodified	_LTGKREETWV_					0	0	0			REV__ENSG00000100403|ENST00000352645|ZC3H7B	REV__ENSG00000100403|ENST00000352645|ZC3H7B	MULTI-MSMS	HCT116MG_D190212_S3	3	609.8272705078125	2	609.827495	1217.64044	0.56113	0.00034219	0.046667	2.8459E-05	0.6078	0.00037065	609.8274013579071	46.778	0.52123	46.464	46.281	46.802	-0.31405					15	9	2	0	0	0	0.86862	1	17562	17562		6.2058	0.47393	1	5046900	+		20546	11083	13039	13096	19737	19737					0.04032184563448027
LTGKREETWV	10	Unmodified	_LTGKREETWV_					0	0	0			REV__ENSG00000100403|ENST00000352645|ZC3H7B	REV__ENSG00000100403|ENST00000352645|ZC3H7B	MULTI-MSMS	HCT116MG_D190212_S4	4	609.8287353515625	2	609.827495	1217.64044	1.0393	0.0006338	-0.78919	-0.00048127	0.25013	0.00015254	609.8269598578838	46.869	0.51775	46.498	46.226	46.743	-0.37134					16	9	2	0	0	0	0.86862	1	17309	17309		6.2058	0.47393	1	7491500	+		20547	11083	13039	13096	19738	19738					0.04032184563448027
LTGLQEQVQW	10	Unmodified	_LTGLQEQVQW_					0	0	0		ENST00000531778.1_1_11:134250299-134250536:-|nuORF	ENST00000531778.1_1_11:134250299-134250536:-|nuORF	ENST00000531778.1_1_11:134250299-134250536:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	601.3150634765625	2	601.31422	1200.61389	0.65998	0.00039686	-0.11264	-6.7732E-05	0.54734	0.00032913	601.3140443066669	46.829	0.57338	46.515	46.281	46.855	-0.31405					18	10	2	0	0	0	0.76143	1	17540	17540		15.248	1.3424	1	5665500			20548	8625	13040	13097	19739	19739					0.021604956721375856
LTGLQEQVQW	10	Unmodified	_LTGLQEQVQW_					0	0	0		ENST00000531778.1_1_11:134250299-134250536:-|nuORF	ENST00000531778.1_1_11:134250299-134250536:-|nuORF	ENST00000531778.1_1_11:134250299-134250536:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	601.31422	1200.61389	0.65998	0.00039686	-0.11264	-6.7732E-05	0.54734	0.00032913	601.3140443066669	46.829	0.57338	46.515	46.281	46.855	-0.31405	0.024998	0.00042651	NaN	15.248	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5665500			20549	8625	13040	13097							0.021604956721375856
LTGLVFGD	8	Unmodified	_LTGLVFGD_					0	0	0			REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	821.4408569335938	1	821.440346	820.433069	0.66298	0.0005446	0.66209	0.00054387	1.3251	0.0010885	821.4409217228247	50.394	0.25707	50.394	50.266	50.523	0					7	4	2	0	0	0	0.15838	1	19235	19235		81.864	18.301	1	30963000	+		20550	15025	13041	13098	19740	19740					0.01567022086101133
LTGLVFGD	8	Unmodified	_LTGLVFGD_					0	0	0			REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	821.4402465820312	1	821.440346	820.433069	0.9046	0.00074308	-0.042095	-3.4579E-05	0.86251	0.0007085	821.4401468700759	51.13	0.681	50.819	50.544	51.225	-0.31166					26	12	3	0	0	0	0.12463	1	19277	19277		89.427	7.5627	1	10298000	+		20551	15025	13041	13098	19741	19741					0.01567022086101133
LTGLVFGD	8	Unmodified	_LTGLVFGD_					0	0	0			REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	821.4404907226562	1	821.440346	820.433069	0.80057	0.00065762	-0.040336	-3.3134E-05	0.76023	0.00062448	821.4401594351643	51.043	0.62317	50.688	50.47	51.093	-0.35483					19	11	2	0	0	0	0.12463	1	18982	18982		89.427	25.864	1	7793900	+		20552	15025	13041	13098	19742	19742					0.01567022086101133
LTGLVFGD	8	Unmodified	_LTGLVFGD_					0	0	0			REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	821.440346	820.433069	0.66298	0.0005446	0.66209	0.00054387	1.3251	0.0010885	821.4409217228247	50.394	0.25707	50.394	50.266	50.523	0	-0.21437	0.00047268	NaN	89.427	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30963000	+		20553	15025	13041	13098							0.01567022086101133
LTGLVFGD	8	Unmodified	_LTGLVFGD_					0	0	0			REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	821.440346	820.433069	0.90092	0.00074005	-0.020202	-1.6595E-05	0.88072	0.00072346	821.4401601250572	50.704	0.3617	50.532	50.403	50.765	-0.1719	-0.075933	-8.7779E-05	NaN	89.427	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9150800	+		20554	15025	13041	13098							0.01567022086101133
LTGLVFGD	8	Unmodified	_LTGLVFGD_					0	0	0			REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	821.440346	820.433069	0.9046	0.00074308	-0.042095	-3.4579E-05	0.86251	0.0007085	821.4401468700759	51.13	0.681	50.819	50.544	51.225	-0.31166	0.21046	-0.00010576	NaN	89.427	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10298000	+		20555	15025	13041	13098							0.01567022086101133
LTGLVFGD	8	Unmodified	_LTGLVFGD_					0	0	0			REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	821.440346	820.433069	0.80057	0.00065762	-0.040336	-3.3134E-05	0.76023	0.00062448	821.4401594351643	51.043	0.62317	50.688	50.47	51.093	-0.35483	0.079841	-0.00010432	NaN	89.427	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7793900	+		20556	15025	13041	13098							0.01567022086101133
LTGNELSSSYW	11	Unmodified	_LTGNELSSSYW_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	628.3295288085938	2	628.793318	1255.57208	0.46109	0.00028993	-0.33771	-0.00021235	0.12338	7.7579E-05	628.7933302542056	33.803	0.15533	33.513	33.408	33.563	-0.29013					4	2	2	0	0	0	0.36367	1	12416	12416		2.9952	2.9952	1	1607600	+		20557	17855	13042	13099	19743	19743					-0.0454810480703145
LTGPRTAIG	9	Unmodified	_LTGPRTAIG_					0	0	0		ENST00000566352.1_1_16:57220506-57238506:+|nuORF	ENST00000566352.1_1_16:57220506-57238506:+|nuORF	ENST00000566352.1_1_16:57220506-57238506:+|nuORF	MSMS	HCT116MG_D190212_S4	4	443.2613830566406	2	443.261259	884.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.375	1	29.026	28.526	29.526	-0.34921								0	0	0	0.7663	1	10605	10605		13.906	0	1				20558	8864	13043	13100	19744	19744					0.061092046173257586
LTGQHIQPDP	10	Unmodified	_LTGQHIQPDP_					0	0	0		ENST00000283027.9_1_16:10862971-10863142:+|nuORF	ENST00000283027.9_1_16:10862971-10863142:+|nuORF	ENST00000283027.9_1_16:10862971-10863142:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2861328125	2	553.285463	1104.55637	0.38949	0.0002155	0.39876	0.00022063	0.78825	0.00043613	553.2856080388148	31.318	0.51847	30.948	30.765	31.283	-0.37026					22	9	4	0	0	0	0.43216	1	11341	11341		39.95	0	1	15920000			20559	6942	13044	13101	19745	19745					0.008276534665810686
LTGYCGSTKF	10	Unmodified	_LTGYCGSTKF_					0	0	0			REV__DCBLD2|p.G297E|1|0.06|ENSG00000057019|chr3:98819399-98819399|C/T|missense_variant	REV__DCBLD2|p.G297E|1|0.06|ENSG00000057019|chr3:98819399-98819399|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	538.8236083984375	2	538.757692	1075.50083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.554	1	31.283	30.783	31.783	-0.27028								0	0	0	0.92917	1	11532	11532		9.3831	2.66	1		+		20560	10333	13045	13102	19746	19746					-0.03389896045405294
LTGYMMAVA	9	Unmodified	_LTGYMMAVA_					0	0	0			REV__OR5C1|p.T250I|1|0.13|ENSG00000148215|chr9:122789681-122789681|C/T|missense_variant	REV__OR5C1|p.T250I|1|0.13|ENSG00000148215|chr9:122789681-122789681|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	479.273681640625	2	478.732632	955.45071	0.30696	0.00014695	-0.12156	-5.8195E-05	0.1854	8.8759E-05	478.73246192621684	52.612	0.36184	52.425	52.244	52.606	-0.18725					14	6	3	0	0	0	0.24622	1	20155	20155		11.64	6.8843	1	30852000	+		20561	12532	13046	13103	19747	19747					-0.028797219749094438
LTHHNQQERD	10	Unmodified	_LTHHNQQERD_					0	0	0			REV__PCDH17|p.S283Qfs*6|1|0.18|ENSG00000118946|chr13:57633388-57633389|-/T|frameshift_variant	REV__PCDH17|p.S283Qfs*6|1|0.18|ENSG00000118946|chr13:57633388-57633389|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	639.302490234375	2	639.302707	1276.59086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.538	1	47.223	46.723	47.723	-0.31525								0	0	0	0.95648	1	17855	17855		3.2813	0	1		+		20562	11649	13047	13104	19748	19748					-0.03637130392621657
LTHHNQQERD	10	Unmodified	_LTHHNQQERD_					0	0	0			REV__PCDH17|p.S283Qfs*6|1|0.18|ENSG00000118946|chr13:57633388-57633389|-/T|frameshift_variant	REV__PCDH17|p.S283Qfs*6|1|0.18|ENSG00000118946|chr13:57633388-57633389|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	639.8035888671875	2	639.302707	1276.59086	0.58985	0.0003771	-1.0273	-0.00065673	-0.4374	-0.00027963	639.3020337920777	46.901	0.41523	46.53	46.329	46.744	-0.37097					12	7	2	0	0	0	0.88076	1	17340	17340		3.2813	0.54611	1	5514900	+		20563	11649	13047	13104	19749	19749					-0.03637130392621657
LTHLEGEVEK	10	Unmodified	_LTHLEGEVEK_					0	0	0		ENST00000480646.1_1_1:1324830-1326370:-|nuORF;ENST00000496007.5_1_1:1324344-1326370:-|nuORF;ENST00000480479.5_1_1:1324040-1326370:-|nuORF;ENST00000505849.5_1_1:1324040-1326969:-|nuORF;nc|ENSG00000221978|Q96S94-3|CCNL2;ENST00000482621.5_1_1:1322613-1328165:-|nuORF;ENST00000481223.6_1_1:1322613-1326370:-|nuORF;ENSG00000221978|ENST00000400809|CCNL2	ENST00000480646.1_1_1:1324830-1326370:-|nuORF	ENST00000480646.1_1_1:1324830-1326370:-|nuORF	MSMS	HCT116MG_D190212_S2	2	577.8079833984375	2	577.806228	1153.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.677	1	53.488	52.988	53.988	-0.1894								0	0	0	0.91279	1	20648	20648		13.042	2.9685	1				20564	6475	13048	13105	19750	19750					0.027247894352285584
LTHLPKTRP	9	Unmodified	_LTHLPKTRP_					0	0	0		ENST00000554512.1_1_14:50195724-50217770:+|nuORF;KLHDC1|p.I377*|3|0.17|ENSG00000197776|chr14:49751674-49751674|A/-|frameshift_variant;ENSG00000197776|ENST00000359332|KLHDC1;ENST00000556392.5_1_14:50159826-50218487:+|nuORF;ENST00000555704.5_1_14:50159830-50218487:+|nuORF	ENST00000554512.1_1_14:50195724-50217770:+|nuORF	ENST00000554512.1_1_14:50195724-50217770:+|nuORF	MSMS	HCT116MG_D190212_S1	1	354.88531494140625	3	354.885464	1061.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.915	1	10.915	10.415	11.415	0								0	0	0	0.76998	1	3389	3389		0.96228	0	1				20565	6175	13049	13106	19751	19751					0.10621130842446291
LTHNLDLLPQ	10	Unmodified	_LTHNLDLLPQ_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	HCT116MG_D190212_S3	3	581.7669677734375	2	582.324588	1162.63462	0.5742	0.00033437	0.63878	0.00037198	1.213	0.00070635	582.3254377492323	45.884	0.31128	45.573	45.357	45.668	-0.31094					10	5	3	0	0	0	0.28308	1	17196	17196		17.443	0	1	4408000	+		20566	12541	13050	13107	19752	19752					0.059810860518155096
LTHQAPPPP	9	Unmodified	_LTHQAPPPP_					0	0	0		nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2608337402344	2	479.261259	956.507966	0.1832	8.7799E-05	-0.36908	-0.00017689	-0.18589	-8.9089E-05	479.26101220309545	20.964	1.7728	20.582	20.073	21.846	-0.38288					61	33	3	0	0	0	0.37539	1	7486	7486		24.021	0.23079	1	14654000			20567	6277	13051	13108	19753	19753					0.027972046173204035
LTHQAPPPP	9	Unmodified	_LTHQAPPPP_					0	0	0		nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	MULTI-MSMS	HCT116MG_D190212_S3	3	479.2612609863281	2	479.261259	956.507966	0.11211	5.3732E-05	0.021337	1.0226E-05	0.13345	6.3958E-05	479.26118646682625	20.422	1.9856	20.471	19.738	21.724	0.048107					71	37	3	0	0	0	0.30117	1	7119	7119		30.637	4.3684	1	8694200			20568	6277	13051	13108	19754	19754					0.027972046173204035
LTILIIIKK	9	Unmodified	_LTILIIIKK_					0	0	0			REV__tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	REV__tr|U7T6X0|U7T6X0_FUSNUNodTfamilyeffluxtransporter,outermembranefactor(OMF)lipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00036PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	352.2593994140625	3	352.258127	1053.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.975	1	57.975	57.475	58.475	0								0	0	0	0.77018	1	22320	22320		0.26902	0.26902	1		+		20569	18004	13052	13109	19755	19755					0.22782690378426196
LTILLLIKFNW	11	Unmodified	_LTILLLIKFNW_					0	0	0		tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	687.4290771484375	2	687.431399	1372.84824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.318	1	57.14	56.64	57.64	-0.17826								0	0	0	0.92235	1	22129	22129		17.113	3.2068	1				20570	18292	13053	13110	19756	19756					0.17673418498679894
LTILLLIKFNW	11	Unmodified	_LTILLLIKFNW_					0	0	0		tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	458.6239013671875	3	458.623358	1372.84824	0.31111	0.00014268	1.159	0.00053154	1.4701	0.00067422	458.95832361560286	56.45	0.36794	56.144	55.937	56.305	-0.30626					11	6	2	0	0	0	0.74191	1	21161	21161		0.45452	0.37117	1	4097800			20571	18292	13053	13110	19757	19757					0.17673418498679894
LTILLLIKFNW	11	Unmodified	_LTILLLIKFNW_					0	0	0		tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	458.623358	1372.84824	0.12685	5.8178E-05	1.4794	0.00067849	1.6063	0.00073667	458.62394462895423	56.104	0.56592	56.104	55.862	56.428	0	-0.0045496	-1.5526E-05	NaN	0.45452	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36932000			20572	18292	13053	13110							0.17673418498679894
LTILLLIKFNW	11	Unmodified	_LTILLLIKFNW_					0	0	0		tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	458.623358	1372.84824	0.25462	0.00011677	1.5337	0.0007034	1.7883	0.00082017	458.6239496917789	56.261	0.57086	56.078	55.847	56.418	-0.18261	-0.030588	5.9211E-05	NaN	0.45452	32	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90010000			20573	18292	13053	13110							0.17673418498679894
LTISLSSIRLI	11	Unmodified	_LTISLSSIRLI_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1;COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant;COL8A1|p.P576Lfs*20|1|0.09|ENSG00000144810|chr3:99795624-99795624|C/-|frameshift_variant;COL8A1|p.H599Mfs*24|2|0.46|ENSG00000144810|chr3:99795690-99795690|C/-|frameshift_variant	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MSMS	HCT116MG_D190212_S2	2	608.3413696289062	2	608.387188	1214.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.308	1	51.129	50.629	51.629	-0.17868								0	0	0	0.95196	1	19683	19683		5.2969	1.7004	1				20574	3885	13054	13111	19758	19758					0.16103378188199713
LTKALAAP	8	Unmodified	_LTKALAAP_					0	0	0			REV__ENSG00000186532|ENST00000305513|SMYD4	REV__ENSG00000186532|ENST00000305513|SMYD4	MSMS	HCT116MG_D190212_S3	3	392.7484130859375	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.074	1	57.804	57.304	58.304	-0.26974								0	0	0	0.8837	1	22084	22084		0.79363	0	1		+		20575	13888	13055	13112	19759	19759					0.0850360521968696
LTKFIAIKNKY	11	Unmodified	_LTKFIAIKNKY_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MSMS	HCT116MG_D190212_S3	3	669.9096069335938	2	669.91083	1337.80711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.396	1	42.093	41.593	42.593	-0.30352								0	0	0	0.95113	1	15792	15792		5.7319	0.43497	1				20576	4328	13056	13113	19760	19760					0.1517165745915463
LTKKELQRTWL	11	Unmodified	_LTKKELQRTWL_					0	0	0		BOD1L1|p.K236Nfs*65|1|0.29|ENSG00000038219|chr4:13614662-13614662|T/-|frameshift_variant	BOD1L1|p.K236Nfs*65|1|0.29|ENSG00000038219|chr4:13614662-13614662|T/-|frameshift_variant	BOD1L1|p.K236Nfs*65|1|0.29|ENSG00000038219|chr4:13614662-13614662|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	473.26519775390625	3	472.617155	1414.82963	0.45701	0.00021599	-0.31791	-0.00015025	0.1391	6.574E-05	472.618006510277	52.206	0.36097	52.019	51.883	52.244	-0.18726					8	6	2	0	0	0	0.36598	1	20083	20083		0.40827	0	1	6714400			20577	272	13057	13114	19761	19761					0.13881256856802793
LTKLITLFLL	10	Unmodified	_LTKLITLFLL_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MSMS	HCT116MG_D190212_S3	3	392.26446533203125	3	392.265171	1173.77368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.457	1	57.182	56.682	57.682	-0.27434								0	0	0	0.96769	1	21835	21835		0.77653	0	1		+		20578	11947	13058	13115	19762	19762					0.19374655687283848
LTKLLKLLL	9	Unmodified	_LTKLLKLLL_					0	0	0		GID8|p.A193T|1|0.14|ENSG00000101193|chr20:62944802-62944802|G/A|missense_variant	GID8|p.A193T|1|0.14|ENSG00000101193|chr20:62944802-62944802|G/A|missense_variant	GID8|p.A193T|1|0.14|ENSG00000101193|chr20:62944802-62944802|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	352.1751403808594	3	352.258127	1053.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.33	1	52.995	52.495	53.495	-0.33473								0	0	0	0.77025	1	19908	19908		0	0	1				20579	9181	13059	13116	19763	19763					0.22782690378426196
LTKLLKLLL	9	Unmodified	_LTKLLKLLL_					0	0	0		GID8|p.A193T|1|0.14|ENSG00000101193|chr20:62944802-62944802|G/A|missense_variant	GID8|p.A193T|1|0.14|ENSG00000101193|chr20:62944802-62944802|G/A|missense_variant	GID8|p.A193T|1|0.14|ENSG00000101193|chr20:62944802-62944802|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	352.25946044921875	3	352.258127	1053.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.688	1	53.358	52.858	53.858	-0.32923								0	0	0	0.77025	1	20052	20052		0	0	1				20580	9181	13059	13116	19764	19764					0.22782690378426196
LTKNGWILI	9	Unmodified	_LTKNGWILI_					0	0	0			REV__ENSG00000255837|ENST00000538986|TAS2R20	REV__ENSG00000255837|ENST00000538986|TAS2R20	MULTI-MSMS	HCT116MG_D190212_S2	2	529.32373046875	2	529.32386	1056.63317	0.51616	0.00027321	-0.43284	-0.00022912	0.083311	4.4098E-05	529.3234717103766	56.997	0.15574	56.818	56.739	56.895	-0.17904					6	2	3	0	0	0	0.029121	1	22023	22023		96.111	10.469	1	35250000	+		20581	14398	13060	13117	19765	19765					0.10711496753719985
LTKSLFWL	8	Unmodified	_LTKSLFWL_					0	0	0		ENST00000571542.5_3_17:18625604-18630869:+|nuORF	ENST00000571542.5_3_17:18625604-18630869:+|nuORF	ENST00000571542.5_3_17:18625604-18630869:+|nuORF	MSMS	HCT116MG_D190212_S1	1	504.3018493652344	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.477	1	43.477	42.977	43.977	0								0	0	0	0.8837	1	16426	16426		10.183	1.5901	1				20582	8893	13061	13118	19766	19766					0.08212422833662458
LTKWVWMVVII	11	Unmodified	_LTKWVWMVVII_					0	0	0			REV__ENST00000497508.1_1_2:669582-669891:-|nuORF	REV__ENST00000497508.1_1_2:669582-669891:-|nuORF	MSMS	HCT116MG_D190212_S1	1	694.36328125	2	694.412152	1386.80975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.109	1	47.109	46.609	47.609	0								0	0	0	0.95581	1	17891	17891		3.2813	0.28607	1		+		20583	12599	13062	13119	19767	19767					0.1318178959247689
LTLGLVGP	8	Unmodified	_LTLGLVGP_					0	0	0		ENST00000474057.5_2_14:23817461-23821194:-|nuORF;nc|ENSG00000092096|Q8WUG5-3|SLC22A17;ENST00000557699.5_1_14:23818379-23821759:-|nuORF;ENSG00000092096|ENST00000354772|SLC22A17;nc|ENSG00000092096|Q8WUG5|SLC22A17	ENST00000474057.5_2_14:23817461-23821194:-|nuORF	ENST00000474057.5_2_14:23817461-23821194:-|nuORF	MSMS	HCT116MG_D190212_S3	3	385.2443542480469	2	385.244547	768.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.184	1	27.978	27.478	28.478	-0.20593								0	0	0	0.8837	1	10189	10189		15.768	0	1				20584	1573	13063	13120	19768	19768					0.08104202845436248
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S1	1	367.26904296875	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.671	1	62.671	62.171	63.171	0								0	0	0	0.77025	1	24204	24204		0	0	1				20585	8153	13064	13121	19769	19769					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S1	1	367.2688293457031	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.619	1	63.619	63.119	64.119	0								0	0	0	0.77025	1	24576	24576		0	0	1				20586	8153	13064	13121	19770	19770					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S1	1	367.2689514160156	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.134	1	64.134	63.634	64.634	0								0	0	0	0.77025	1	24750	24750		0	0	1				20587	8153	13064	13121	19771	19771					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S2	2	367.2684020996094	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.625	1	63.502	63.002	64.002	-0.12264								0	0	0	0.77025	1	24659	24659		0	0	1				20588	8153	13064	13121	19772	19772					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S2	2	367.268798828125	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.151	1	64.036	63.536	64.536	-0.11585								0	0	0	0.77025	1	24843	24843		0	0	1				20589	8153	13064	13121	19773	19773					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.25872802734375	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.958	1	57.669	57.169	58.169	-0.28879								0	0	0	0.77025	1	21769	21769		0	0	1				20590	8153	13064	13121	19774	19774					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.2687072753906	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.069	1	57.781	57.281	58.281	-0.28879								0	0	0	0.77018	1	21814	21814		0.26902	0.26902	1				20591	8153	13064	13121	19775	19775					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.2688903808594	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.659	1	58.376	57.876	58.876	-0.28305								0	0	0	0.77025	1	22054	22054		0	0	1				20592	8153	13064	13121	19776	19776					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.26947021484375	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.236	1	58.959	58.459	59.459	-0.27731								0	0	0	0.77025	1	22287	22287		0	0	1				20593	8153	13064	13121	19777	19777					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.2690124511719	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.848	1	59.577	59.077	60.077	-0.27156								0	0	0	0.77019	1	22533	22533		0.23584	0	1				20594	8153	13064	13121	19778	19778					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.2691955566406	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.524	1	61.266	60.766	61.766	-0.25862								0	0	0	0.77025	1	23212	23212		0	0	1				20595	8153	13064	13121	19779	19779					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.2696533203125	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.779	1	61.525	61.025	62.025	-0.25457								0	0	0	0.77025	1	23315	23315		0	0	1				20596	8153	13064	13121	19780	19780					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.26971435546875	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.113	1	61.859	61.359	62.359	-0.25457								0	0	0	0.77025	1	23449	23449		0	0	1				20597	8153	13064	13121	19781	19781					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.26910400390625	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.648	1	62.399	61.899	62.899	-0.24919								0	0	0	0.77025	1	23656	23656		0	0	1				20598	8153	13064	13121	19782	19782					0.23980897501246545
LTLIKKKKK	9	Unmodified	_LTLIKKKKK_					0	0	0		ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	ENST00000471326.5_1_1:154245614-154245674:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.2687072753906	3	367.269027	1098.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.861	1	63.622	63.122	64.122	-0.2389								0	0	0	0.77025	1	24065	24065		0	0	1				20599	8153	13064	13121	19783	19783					0.23980897501246545
LTLKKRKKMI	10	Unmodified	_LTLKKRKKMI_					0	0	0			REV__ENSG00000088882|ENST00000380605|CPXM1	REV__ENSG00000088882|ENST00000380605|CPXM1	MSMS	HCT116MG_D190212_S4	4	629.9254150390625	2	629.923218	1257.83188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.125	1	41.75	41.25	42.25	-0.37565								0	0	0	0.96377	1	15471	15471		1.6526	0	1		+		20600	10961	13065	13122	19784	19784					0.21328014060918576
LTLKPTEVLH	10	Unmodified	_LTLKPTEVLH_					0	0	0		tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	576.0823974609375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.514	1	51.331	50.831	51.831	-0.18369								0	0	0	0.92272	1	19767	19767		10.824	2.6684	1				20601	18333	13066	13123	19785	19785					0.10690847091291289
LTLLCMEEY	9	Unmodified	_LTLLCMEEY_					0	0	0		nc|ENSG00000132773|Q96GM8-2|TOE1;ENSG00000132773|ENST00000372090|TOE1;TOE1|p.Y231Sfs*5|1|0.05|ENSG00000132773|chr1:45342580-45342581|-/GTCT|frameshift_variant;ENST00000471337.5_1_1:45805924-45808422:+|nuORF	nc|ENSG00000132773|Q96GM8-2|TOE1	nc|ENSG00000132773|Q96GM8-2|TOE1	MULTI-SECPEP	HCT116MG_D190212_S2	2	372.86090087890625	3	372.176816	1113.50862	-0.11134	-4.1439E-05	0.090049	3.3514E-05	-0.021293	-7.9249E-06	372.1766282070471	25.217	0.2602	24.842	24.66	24.92	-0.37521					6	4	2	0	0	0	0.26046	1	9077	9077		7.609	0	1	11678000			20602	3210	13067	13124	19786	19786					-0.04359504840135742
LTLLMALLF	9	Unmodified	_LTLLMALLF_					0	0	0			REV__ENST00000510359.1_1_5:106716958-106724204:-|nuORF	REV__ENST00000510359.1_1_5:106716958-106724204:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.3544311523438	2	517.819564	1033.62458	-0.049071	-2.541E-05	-1.5259	-0.00079016	-1.575	-0.00081557	518.3199540783608	49.763	0.76442	49.599	49.228	49.993	-0.16369					20	14	2	0	0	0	0.24195	1	19196	19196		18.135	5.6034	1	49309000	+		20603	13793	13068	13125	19787	19787					0.10910806792867334
LTLLRFRIL	9	Unmodified	_LTLLRFRIL_					0	0	0		CYP4F3|p.V491I|1|0.45|ENSG00000186529|chr19:15659293-15659293|G/A|missense_variant;ENSG00000186526|ENST00000612078|CYP4F8	CYP4F3|p.V491I|1|0.45|ENSG00000186529|chr19:15659293-15659293|G/A|missense_variant	CYP4F3|p.V491I|1|0.45|ENSG00000186529|chr19:15659293-15659293|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	572.8822021484375	2	572.881876	1143.7492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.487	1	29.487	28.987	29.987	0								0	0	0	0.76902	1	10779	10779		4.3292	0.38484	1				20604	632	13069	13126	19788	19788					0.18307440324406343
LTLLWDRPL	9	Unmodified	_LTLLWDRPL_					0	0	0		CIITA|p.R599W|1|0.34|ENSG00000179583|chr16:10907287-10907287|C/T|missense_variant	CIITA|p.R599W|1|0.34|ENSG00000179583|chr16:10907287-10907287|C/T|missense_variant	CIITA|p.R599W|1|0.34|ENSG00000179583|chr16:10907287-10907287|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	376.2265625	3	376.225486	1125.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.013	1	46.013	45.513	46.513	0								0	0	0	0.76793	1	17446	17446		8.1555	2.4237	1				20605	464	13070	13127	19789	19789					0.0968288178239618
LTLLWDRPL	9	Unmodified	_LTLLWDRPL_					0	0	0		CIITA|p.R599W|1|0.34|ENSG00000179583|chr16:10907287-10907287|C/T|missense_variant	CIITA|p.R599W|1|0.34|ENSG00000179583|chr16:10907287-10907287|C/T|missense_variant	CIITA|p.R599W|1|0.34|ENSG00000179583|chr16:10907287-10907287|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	376.2268371582031	3	376.225486	1125.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.01	1	45.908	45.408	46.408	-0.1014								0	0	0	0.76793	1	17513	17513		8.1555	2.4237	1				20606	464	13070	13127	19790	19790					0.0968288178239618
LTLRWLRHVLL	11	Unmodified	_LTLRWLRHVLL_					0	0	0			REV__nc|ENSG00000135775|Q14746-2|COG2	REV__nc|ENSG00000135775|Q14746-2|COG2	MSMS	HCT116MG_D190212_S3	3	710.4534301757812	2	710.450988	1418.88742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.565	1	44.257	43.757	44.757	-0.30759								0	0	0	0.95954	1	16663	16663		1.3295	0	1		+		20607	12106	13071	13128	19791	19791					0.19473563572887542
LTLRWLRHVLL	11	Unmodified	_LTLRWLRHVLL_					0	0	0			REV__nc|ENSG00000135775|Q14746-2|COG2	REV__nc|ENSG00000135775|Q14746-2|COG2	MSMS	HCT116MG_D190212_S4	4	710.45361328125	2	710.450988	1418.88742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.614	1	44.241	43.741	44.741	-0.37326								0	0	0	0.95954	1	16442	16442		1.3295	0	1		+		20608	12106	13071	13128	19792	19792					0.19473563572887542
LTLSLYLFKLF	11	Unmodified	_LTLSLYLFKLF_					0	0	0			REV__tr|U7SUF2|U7SUF2_FUSNUAzaleucineresistanceproteinAzlCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01400PE=3SV=1	REV__tr|U7SUF2|U7SUF2_FUSNUAzaleucineresistanceproteinAzlCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01400PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	679.411376953125	2	679.410132	1356.80571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.16	1	49.991	49.491	50.491	-0.16827								0	0	0	0.95196	1	19218	19218		5.2969	0.76802	1		+		20609	17830	13072	13129	19793	19793					0.14158023370396222
LTLSRPDR	8	Unmodified	_LTLSRPDR_					0	0	0			REV__MAN2C1|p.G331Afs*17|2|0.14|ENSG00000140400|chr15:75362359-75362359|C/-|frameshift_variant	REV__MAN2C1|p.G331Afs*17|2|0.14|ENSG00000140400|chr15:75362359-75362359|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	479.27703857421875	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.226	1	43.852	43.352	44.352	-0.37373								0	0	0	0.8837	1	16286	16286		2.5775	0	1		+		20610	12293	13073	13130	19794	19794					0.060319920203255606
LTLSTRSKR	9	Unmodified	_LTLSTRSKR_					0	0	0			REV__ENSG00000221944|ENST00000408957|TIGD1	REV__ENSG00000221944|ENST00000408957|TIGD1	MULTI-MSMS	HCT116MG_D190212_S1	1	531.325927734375	2	531.324922	1060.63529	0.1772	9.4148E-05	-0.12348	-6.561E-05	0.053711	2.8538E-05	531.3249060704293	51.272	1.7041	51.272	50.73	52.434	0					80	32	6	0	0	0	0.67781	1	19957	19957		6.7232	2.3939	1	4957800000	+		20611	14292	13074	13131	19795	19795					0.10739925491520808
LTLSTRSKR	9	Unmodified	_LTLSTRSKR_					0	0	0			REV__ENSG00000221944|ENST00000408957|TIGD1	REV__ENSG00000221944|ENST00000408957|TIGD1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	531.324922	1060.63529	0.45329	0.00024084	-0.045079	-2.3952E-05	0.40821	0.00021689	531.324922549056	51.593	0.26207	51.282	51.12	51.382	-0.31166	0.0049213	7.3842E-05	NaN	6.7232	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1406000	+		20612	14292	13074	13131							0.10739925491520808
LTLSVVRIRKL	11	Unmodified	_LTLSVVRIRKL_					0	0	0		ENST00000515014.5_1_5:137497515-137500639:-|nuORF	ENST00000515014.5_1_5:137497515-137500639:-|nuORF	ENST00000515014.5_1_5:137497515-137500639:-|nuORF	MSMS	HCT116MG_D190212_S2	2	649.4365234375	2	649.437547	1296.86054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.49	1	39.412	38.912	39.912	-0.077835								0	0	0	0.95113	1	14864	14864		5.7319	0.43497	1				20613	8529	13075	13132	19796	19796					0.2239845496169437
LTLTSSSL	8	Unmodified	_LTLTSSSL_					0	0	0			REV__AKAP6|p.S1753N|1|0.11|ENSG00000151320|chr14:32823071-32823071|G/A|missense_variant	REV__AKAP6|p.S1753N|1|0.11|ENSG00000151320|chr14:32823071-32823071|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	411.23333740234375	2	411.234376	820.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.286	1	22.286	21.786	22.786	0								0	0	0	0.8837	1	7883	7883		5.7604	0	1		+		20614	9905	13076	13133	19797	19797					0.03678987394948763
LTMCPDYQSY	10	Unmodified	_LTMCPDYQSY_					0	0	0		CON__A2AB72	CON__A2AB72	CON__A2AB72	MULTI-SECPEP	HCT116MG_D190212_S2	2	610.864501953125	2	610.75175	1219.48895	0.51391	0.00031387	-0.34398	-0.00021009	0.16993	0.00010378	610.7514762343441	54.979	0.15367	54.791	54.662	54.816	-0.18797					4	2	2	0	0	0	0.31081	1	21130	21130		2.7352	0	1	26645000		+	20615	535	13077	13134	19798	19798					-0.11201880850899215
LTMKILWG	8	Unmodified	_LTMKILWG_					0	0	0			REV__ENSG00000140905|ENST00000315467|GCSH	REV__ENSG00000140905|ENST00000315467|GCSH	MULTI-MSMS	HCT116MG_D190212_S4	4	481.2803955078125	2	481.280606	960.546659	0.29221	0.00014063	0.81746	0.00039343	1.1097	0.00053406	481.28046253670357	45.561	0.98916	45.188	44.613	45.602	-0.37266					30	19	3	0	0	0	0.86564	1	16791	16791		2.5775	2.5775	1	5742400	+		20616	12314	13078	13135	19799	19799					0.06480793927494233
LTNIFNFVIK	10	Unmodified	_LTNIFNFVIK_					0	0	0		ENST00000508935.1_1_5:102509577-102509760:+|nuORF	ENST00000508935.1_1_5:102509577-102509760:+|nuORF	ENST00000508935.1_1_5:102509577-102509760:+|nuORF	MSMS	HCT116MG_D190212_S4	4	604.85498046875	2	604.855524	1207.69649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.777	1	49.415	48.915	49.915	-0.36213								0	0	0	0.95776	1	18475	18475		2.9952	0	1				20617	8485	13079	13136	19800	19800					0.10095437470931756
LTNLAKDLGL	10	Unmodified	_LTNLAKDLGL_					0	0	0		PCDHB7|p.A540Rfs*2|1|0.1|ENSG00000113212|chr5:141174448-141174448|C/-|frameshift_variant;ENSG00000113212|ENST00000231137|PCDHB7	PCDHB7|p.A540Rfs*2|1|0.1|ENSG00000113212|chr5:141174448-141174448|C/-|frameshift_variant	PCDHB7|p.A540Rfs*2|1|0.1|ENSG00000113212|chr5:141174448-141174448|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	529.3163452148438	2	529.316232	1056.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.722	1	42.652	42.152	43.152	-0.069984								0	0	0	0.78084	1	16178	16178		31.268	1.8312	1				20618	2373	13080	13137	19801	19801					0.09186585165844008
LTNQFRRHKSQ	11	Unmodified	_LTNQFRRHKSQ_					0	0	0			REV__ENSG00000198894|ENST00000361786|CIPC	REV__ENSG00000198894|ENST00000361786|CIPC	MSMS	HCT116MG_D190212_S3	3	707.8861694335938	2	707.886741	1413.75893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.917	1	36.616	36.116	37.116	-0.30113								0	0	0	0.95273	1	13657	13657		4.897	1.3005	1		+		20619	14161	13081	13138	19802	19802					0.06859976591840677
LTNVIQSFK	9	Unmodified	_LTNVIQSFK_					0	0	0			REV__ENSG00000182580|ENST00000330394|EPHB3	REV__ENSG00000182580|ENST00000330394|EPHB3	MSMS	HCT116MG_D190212_S3	3	525.302978515625	2	525.303124	1048.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.322	1	32.044	31.544	32.544	-0.27841								0	0	0	0.67173	1	11842	11842		20.454	0.039092	1		+		20620	13721	13082	13139	19803	19803					0.06934315994362805
LTPAIGEAPP	10	Unmodified	_LTPAIGEAPP_					0	0	0			REV__ENST00000570108.5_1_15:41099407-41099470:+|nuORF	REV__ENST00000570108.5_1_15:41099407-41099470:+|nuORF	MSMS	HCT116MG_D190212_S4	4	483.2376708984375	2	483.26875	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.438	1	33.056	32.556	33.556	-0.38223								0	0	0	0.90475	1	12173	12173		14.838	0	1		+		20621	16574	13083	13140	19804	19804					0.03926651694666816
LTPLAPGSLP	10	Unmodified	_LTPLAPGSLP_					0	0	0		ENST00000528563.5_1_19:46807167-46825077:+|nuORF	ENST00000528563.5_1_19:46807167-46825077:+|nuORF	ENST00000528563.5_1_19:46807167-46825077:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	483.2872009277344	2	483.286943	964.559333	0.12122	5.8584E-05	0.042387	2.0485E-05	0.16361	7.907E-05	483.2868475333261	44.282	0.49678	43.908	43.623	44.12	-0.37373					14	9	2	0	0	0	0.58749	1	16305	16305		29.082	0.59474	1	3040200			20622	8604	13084	13141	19805	19805					0.07563528591379054
LTPLAPGSLP	10	Unmodified	_LTPLAPGSLP_					0	0	0		ENST00000528563.5_1_19:46807167-46825077:+|nuORF	ENST00000528563.5_1_19:46807167-46825077:+|nuORF	ENST00000528563.5_1_19:46807167-46825077:+|nuORF	MSMS	HCT116MG_D190212_S4	4	483.2872314453125	2	483.286943	964.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.836	1	44.463	43.963	44.963	-0.37326								0	0	0	0.72975	1	16522	16522		36.127	0.082828	1				20623	8604	13084	13141	19806	19806					0.07563528591379054
LTPPWPTHKL	10	Unmodified	_LTPPWPTHKL_					0	0	0			REV__ENST00000551455.5_1_12:110388962-110434038:-|nuORF	REV__ENST00000551455.5_1_12:110388962-110434038:-|nuORF	MSMS	HCT116MG_D190212_S1	1	595.3375854492188	2	595.340041	1188.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.366	1	50.366	49.866	50.866	0								0	0	0	0.95998	1	19216	19216		2.4985	0.65425	1		+		20624	12261	13085	13142	19807	19807					0.07874284156696376
LTPRKNLMRKY	11	Unmodified	_LTPRKNLMRKY_					0	0	0			REV__nc|ENSG00000198373|O00308-3|WWP2	REV__nc|ENSG00000198373|O00308-3|WWP2	MSMS	HCT116MG_D190212_S4	4	710.4166870117188	2	710.416288	1418.81802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.617	1	36.233	35.733	36.733	-0.38486								0	0	0	0.95273	1	13407	13407		4.897	1.3005	1		+		20625	14121	13086	13143	19808	19808					0.12536736561810358
LTPTSLSSPP	10	Unmodified	_LTPTSLSSPP_					0	0	0			REV__PCDHGA3|p.A499Rfs*19|1|0.23|ENSG00000254245|chr5:141345524-141345524|G/-|frameshift_variant	REV__PCDHGA3|p.A499Rfs*19|1|0.23|ENSG00000254245|chr5:141345524-141345524|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	500.27032470703125	2	500.27149	998.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.456	1	19.456	18.956	19.956	0								0	0	0	0.92607	1	6748	6748		10.074	0.72649	1		+		20626	17395	13087	13144	19809	19809					0.029103304864634083
LTQAAGPGAP	10	Unmodified	_LTQAAGPGAP_					0	0	0			REV__TAF4|p.K888Nfs*4|1|0.18|ENSG00000130699|chr20:62000247-62000247|T/-|frameshift_variant	REV__TAF4|p.K888Nfs*4|1|0.18|ENSG00000130699|chr20:62000247-62000247|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	441.7380065917969	2	441.737617	881.460681	0.035364	1.5622E-05	1.4877	0.00065718	1.5231	0.0006728	441.738353215406	25.655	0.41647	25.286	24.978	25.394	-0.36914					10	7	2	0	0	0	0.30623	1	9258	9258		49.933	6.0747	1	6967300	+		20627	11934	13088	13145	19810	19810					0.015209253463240202
LTQEKEEWY	9	Unmodified	_LTQEKEEWY_					0	0	0			REV__ENST00000571861.5_1_17:78162196-78169468:+|nuORF	REV__ENST00000571861.5_1_17:78162196-78169468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1225.574462890625	1	1225.57354	1224.56627	0.51708	0.00063372	0.20022	0.00024538	0.7173	0.00087911	1225.573480095215	46.144	0.30904	46.043	45.863	46.172	-0.1014					12	5	3	0	0	0	0.19461	1	17575	17575		41.84	7.4379	1	44744000	+		20628	10092	13089	13146	19811	19811					-0.03703203318718806
LTQEKEEWY	9	Unmodified	_LTQEKEEWY_					0	0	0			REV__ENST00000571861.5_1_17:78162196-78169468:+|nuORF	REV__ENST00000571861.5_1_17:78162196-78169468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	613.8231201171875	2	613.290411	1224.56627	0.85111	0.00052198	-0.32251	-0.00019779	0.52861	0.00032419	613.2901100981576	46.452	0.43938	46.08	45.941	46.38	-0.37134					33	11	4	0	0	0	0.41881	1	17258	17258		21.537	4.4241	1	68752000	+		20629	10092	13089	13146	19812	19812					-0.03703203318718806
LTQEKEEWY	9	Unmodified	_LTQEKEEWY_					0	0	0			REV__ENST00000571861.5_1_17:78162196-78169468:+|nuORF	REV__ENST00000571861.5_1_17:78162196-78169468:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1225.57354	1224.56627	0.51708	0.00063372	0.20022	0.00024538	0.7173	0.00087911	1225.573480095215	46.144	0.30904	46.043	45.863	46.172	-0.1014	-0.0027898	4.1662E-05	NaN	41.84	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44744000	+		20630	10092	13089	13146							-0.03703203318718806
LTQEKEEWY	9	Unmodified	_LTQEKEEWY_					0	0	0			REV__ENST00000571861.5_1_17:78162196-78169468:+|nuORF	REV__ENST00000571861.5_1_17:78162196-78169468:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1225.57354	1224.56627	0.91365	0.0011197	-0.27839	-0.00034118	0.63526	0.00077856	1226.5767068117561	46.361	0.14835	46.049	45.978	46.126	-0.31237	0.0027898	-0.00054491	NaN	41.84	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3198200	+		20631	10092	13089	13146							-0.03703203318718806
LTQHRKIHT	9	Unmodified	_LTQHRKIHT_					0	0	0		ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267;ENST00000601957.5_1_19:35433558-35435739:+|nuORF;ZNF30|p.K600Nfs*16|4|0.2|ENSG00000168661|chr19:34944761-34944761|A/-|frameshift_variant;ENSG00000168661|ENST00000601142|ZNF30;nc|ENSG00000168661|P17039-2|ZNF30	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENST00000575471.2_1_16:31925765-31927799:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	568.7504272460938	2	567.330539	1132.64652	0.32671	0.00018536	-0.62184	-0.00035279	-0.29513	-0.00016743	567.3299599554615	47.408	1.1929	47.408	46.907	48.1	0					48	23	4	0	0	0	0.67944	1	17899	17899		10.074	0	1	49971000			20632	5856	13090	13147	19813	19813					0.08550747585650242
LTQHSLYQK	9	Unmodified	_LTQHSLYQK_					0	0	0			REV__ENST00000334166.8_1_2:150325168-150325279:+|nuORF	REV__ENST00000334166.8_1_2:150325168-150325279:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	373.204345703125	3	373.204862	1116.59276	-0.1365	-5.0942E-05	-0.1737	-6.4827E-05	-0.3102	-0.00011577	373.20469232960266	16.135	0.20852	16.135	16.004	16.213	0					5	3	2	0	0	0	0.71345	1	5426	5426		2.4985	0.90621	1	4584600	+		20633	14942	13091	13148	19814	19814					0.03912530363277256
LTQKRYLVKLI	11	Unmodified	_LTQKRYLVKLI_					0	0	0		CXCR2|p.F164L|1|0.16|ENSG00000180871|chr2:218135293-218135293|C/A|missense_variant	CXCR2|p.F164L|1|0.16|ENSG00000180871|chr2:218135293-218135293|C/A|missense_variant	CXCR2|p.F164L|1|0.16|ENSG00000180871|chr2:218135293-218135293|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	687.9464721679688	2	687.945205	1373.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.684	1	44.375	43.875	44.875	-0.30866								0	0	0	0.95954	1	16710	16710		1.3295	0	1				20634	622	13092	13149	19815	19815					0.20387321758903454
LTQNVQNEY	9	Unmodified	_LTQNVQNEY_					0	0	0			REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10	REV__nc|ENSG00000250120|Q9Y5I2-2|PCDHA10	MULTI-SECPEP	HCT116MG_D190212_S1	1	554.2670288085938	2	554.767103	1107.51965	0.50459	0.00027993	0.66909	0.00037119	1.1737	0.00065112	554.7676329870296	21.315	0.15959	21.315	21.226	21.385	0					4	2	2	0	0	0	0.23771	1	7503	7503		10.074	4.777	1	5998900	+		20635	14378	13093	13150	19816	19816					-0.02980643149999196
LTQQPRSL	8	Unmodified	_LTQQPRSL_					0	0	0			REV__ENST00000577015.1_1_16:3284985-3285267:-|nuORF	REV__ENST00000577015.1_1_16:3284985-3285267:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	472.2402038574219	2	471.771991	941.529429	0.2729	0.00012875	1.3392	0.00063178	1.6121	0.00076053	471.7720779430615	26.475	0.31222	26.475	26.397	26.709	0					8	5	2	0	0	0	0.30703	1	9564	9564		12.532	0	1	2603000	+		20636	16607	13094	13151	19817	19817					0.05632589646052111
LTQSSRSP	8	Unmodified	_LTQSSRSP_					0	0	0		ENST00000535572.5_1_12:861868-861943:+|nuORF	ENST00000535572.5_1_12:861868-861943:+|nuORF	ENST00000535572.5_1_12:861868-861943:+|nuORF	MSMS	HCT116MG_D190212_S1	1	437.7718811035156	2	438.232699	874.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.043	1	25.043	24.543	25.543	0								0	0	0	0.8837	1	8991	8991		15.847	1.0089	1				20637	8663	13095	13152	19818	19818					0.008597373409543252
LTQTAGVVGF	10	Unmodified	_LTQTAGVVGF_					0	0	0			REV__ENST00000258955.6_1_17:48563112-48563187:+|nuORF	REV__ENST00000258955.6_1_17:48563112-48563187:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	496.29290771484375	2	496.7742	991.533846	0.34471	0.00017124	0.49558	0.00024619	0.84029	0.00041743	496.77429974004576	55.15	0.20284	54.962	54.867	55.07	-0.18797					7	3	3	0	0	0	0.30526	1	21290	21290		3.2813	1.2216	1	16645000	+		20638	14618	13096	13153	19819	19819					0.0377405406896969
LTQVFTSNGPT	11	Unmodified	_LTQVFTSNGPT_					0	0	0		ENST00000571954.5_1_17:80918331-81006625:-|nuORF;ENSG00000175711|ENST00000320865|B3GNTL1	ENST00000571954.5_1_17:80918331-81006625:-|nuORF	ENST00000571954.5_1_17:80918331-81006625:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	582.798583984375	2	582.798403	1163.58225	0.26083	0.00015201	0.30729	0.00017909	0.56812	0.0003311	582.7985069755107	36.83	0.20755	36.446	36.331	36.539	-0.38486					6	3	2	0	0	0	0.68491	1	13507	13507		26.021	9.8716	1	2602200			20639	5392	13097	13154	19820	19820					0.007005029181982536
LTQVQVPFLP	10	Unmodified	_LTQVQVPFLP_					0	0	0			REV__nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	REV__nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	MSMS	HCT116MG_D190212_S3	3	571.2446899414062	2	571.334424	1140.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.456	1	39.155	38.655	39.655	-0.30137								0	0	0	0.94339	1	14647	14647		6.2058	0.47393	1		+		20640	13974	13098	13155	19821	19821					0.08959462062580315
LTRASGGP	8	Unmodified	_LTRASGGP_					0	0	0			REV__ENST00000569914.5_1_16:67144038-67154090:+|nuORF	REV__ENST00000569914.5_1_16:67144038-67154090:+|nuORF	MSMS	HCT116MG_D190212_S3	3	379.7109375	2	379.711402	757.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.188	1	43.88	43.38	44.38	-0.30759								0	0	0	0.8837	1	16511	16511		10.183	0	1		+		20641	16571	13099	13156	19822	19822					0.019843870033810163
LTRGFGGSV	9	Unmodified	_LTRGFGGSV_					0	0	0			REV__ENST00000308406.9_1_17:19281193-19281268:+|nuORF	REV__ENST00000308406.9_1_17:19281193-19281268:+|nuORF	MSMS	HCT116MG_D190212_S3	3	447.2447509765625	2	447.245609	892.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.261	1	25.155	24.655	25.655	-0.10618								0	0	0	0.76818	1	9010	9010		7.2892	1.5288	1		+		20642	14821	13100	13157	19823	19823					0.026126315832470937
LTRHQKLP	8	Unmodified	_LTRHQKLP_					0	0	0		ENST00000377689.2_1_9:38527126-38527906:+|nuORF;nc|ENSG00000176007|B1ANY3|FAM220BP	ENST00000377689.2_1_9:38527126-38527906:+|nuORF	ENST00000377689.2_1_9:38527126-38527906:+|nuORF	MSMS	HCT116MG_D190212_S4	4	496.8056945800781	2	496.803626	991.592698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.395	1	47.025	46.525	47.525	-0.37038								0	0	0	0.8837	1	17530	17530		2.5775	0	1				20643	7528	13101	13158	19824	19824					0.0965657515392877
LTRLRNPRK	9	Unmodified	_LTRLRNPRK_					0	0	0			REV__ENST00000413366.7_1_17:64800791-64801205:+|nuORF	REV__ENST00000413366.7_1_17:64800791-64801205:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	577.7899780273438	2	577.367456	1152.72036	0.3969	0.00022916	-0.62038	-0.00035819	-0.22349	-0.00012903	577.3670253209788	54.303	0.20908	54.007	53.877	54.086	-0.29587					5	3	2	0	0	0	0.26734	1	20569	20569		4.3292	0.73274	1	1389300	+		20644	15455	13102	13159	19825	19825					0.15010715747962422
LTRLRNPRK	9	Unmodified	_LTRLRNPRK_					0	0	0			REV__ENST00000413366.7_1_17:64800791-64801205:+|nuORF	REV__ENST00000413366.7_1_17:64800791-64801205:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	577.367456	1152.72036	0.55957	0.00032308	-1.0593	-0.00061163	-0.49977	-0.00028855	577.3667458224401	53.899	0.56337	53.899	53.616	54.179	0	-0.054366	-0.00019818	NaN	4.3292	28	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1720699999.9999998	+		20645	15455	13102	13159							0.15010715747962422
LTRPQPCPLP	10	Unmodified	_LTRPQPCPLP_					0	0	0		ENSG00000146094|ENST00000510898|DOK3;nc|ENSG00000146094|Q7L591|DOK3	ENSG00000146094|ENST00000510898|DOK3	ENSG00000146094|ENST00000510898|DOK3	MSMS	HCT116MG_D190212_S3	3	561.2830810546875	2	561.310426	1120.6063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.694	1	32.409	31.909	32.909	-0.28511								0	0	0	0.92272	1	11992	11992		10.824	0	1				20646	3939	13103	13160	19826	19826					0.050820648708622684
LTRRLLLP	8	Unmodified	_LTRRLLLP_					0	0	0		ENST00000467906.5_1_6:43042431-43042626:+|nuORF	ENST00000467906.5_1_6:43042431-43042626:+|nuORF	ENST00000467906.5_1_6:43042431-43042626:+|nuORF	MSMS	HCT116MG_D190212_S3	3	491.3341064453125	2	491.332019	980.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.66	1	31.39	30.89	31.89	-0.27028								0	0	0	0.8837	1	11575	11575		5.7604	0	1				20647	8120	13104	13161	19827	19827					0.15838622710464278
LTRRVWKPN	9	Unmodified	_LTRRVWKPN_					0	0	0		tr|U7T5H7|U7T5H7_FUSNULargeribosomalsubunitproteinbL28OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmBPE=3SV=1	tr|U7T5H7|U7T5H7_FUSNULargeribosomalsubunitproteinbL28OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmBPE=3SV=1	tr|U7T5H7|U7T5H7_FUSNULargeribosomalsubunitproteinbL28OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpmBPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	585.3469848632812	2	585.348732	1168.68291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.717	1	16.717	16.217	17.217	0								0	0	0	0.768	1	5644	5644		7.9102	1.187	1				20648	18628	13105	13162	19828	19828					0.10531624482359803
LTRTQPPP	8	Unmodified	_LTRTQPPP_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MSMS	HCT116MG_D190212_S3	3	455.26055908203125	2	455.261259	908.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.143	1	30.882	30.382	31.382	-0.26071								0	0	0	0.8837	1	11367	11367		14.582	0	1		+		20649	17234	13106	13163	19829	19829					0.050052046173163944
LTSAPSPTPG	10	Unmodified	_LTSAPSPTPG_					0	0	0		ENST00000589123.5_2_19:3381710-3381962:+|nuORF	ENST00000589123.5_2_19:3381710-3381962:+|nuORF	ENST00000589123.5_2_19:3381710-3381962:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	927.4773559570312	1	927.478188	926.470912	0.99527	0.00092309	-1.4806	-0.0013732	-0.48532	-0.00045013	927.4762616344328	34.152	0.36311	33.977	33.709	34.072	-0.17511					10	6	2	0	0	0	0.61891	1	12708	12708		26.884	1.4843	1	19581000			20650	9021	13107	13164	19830	19830					0.0047348828089752715
LTSAPSPTPG	10	Unmodified	_LTSAPSPTPG_					0	0	0		ENST00000589123.5_2_19:3381710-3381962:+|nuORF	ENST00000589123.5_2_19:3381710-3381962:+|nuORF	ENST00000589123.5_2_19:3381710-3381962:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	927.478271484375	1	927.478188	926.470912	0.72488	0.00067231	-1.2035	-0.0011162	-0.47865	-0.00044393	927.4768664996901	34.343	0.36209	33.958	33.776	34.138	-0.38558					13	6	3	0	0	0	0.61891	1	12529	12529		26.884	3.7352	1	8132200			20651	9021	13107	13164	19831	19831					0.0047348828089752715
LTSAPSPTPG	10	Unmodified	_LTSAPSPTPG_					0	0	0		ENST00000589123.5_2_19:3381710-3381962:+|nuORF	ENST00000589123.5_2_19:3381710-3381962:+|nuORF	ENST00000589123.5_2_19:3381710-3381962:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	927.478188	926.470912	0.96482	0.00089485	-1.5387	-0.0014271	-0.57384	-0.00053223	927.4766467997537	34.207	0.46838	33.912	33.715	34.184	-0.2942	-0.036425	-7.4375E-05	NaN	26.884	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17671000			20652	9021	13107	13164							0.0047348828089752715
LTSDIRKNYVL	11	Unmodified	_LTSDIRKNYVL_					0	0	0			REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	REV__tr|U7T292|U7T292_FUSNUFour-carbonacidsugarkinasefamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00512PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	661.376953125	2	661.377352	1320.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.045	1	53.856	53.356	54.356	-0.1894								0	0	0	0.91653	1	20798	20798		29.082	11.969	1		+		20653	17919	13108	13165	19832	19832					0.09261002177413502
LTSFGFVLK	9	Unmodified	_LTSFGFVLK_					0	0	0			REV__ENST00000333219.8_1_13:111366016-111366232:+|nuORF	REV__ENST00000333219.8_1_13:111366016-111366232:+|nuORF	MSMS	HCT116MG_D190212_S4	4	506.299072265625	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.573	1	42.197	41.697	42.697	-0.37565								0	0	0	0.76902	1	15652	15652		4.3292	0.38484	1		+		20654	14941	13109	13166	19833	19833					0.07520118971046941
LTSIPDSP	8	Unmodified	_LTSIPDSP_					0	0	0			REV__SI|p.R1019C|1|0.3|ENSG00000090402|chr3:165023614-165023614|G/A|missense_variant	REV__SI|p.R1019C|1|0.3|ENSG00000090402|chr3:165023614-165023614|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	415.21746826171875	2	415.218726	828.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.297	1	28.948	28.448	29.448	-0.34921								0	0	0	0.8837	1	10574	10574		13.508	0.97634	1		+		20655	10983	13110	13167	19834	19834					0.0018241436084736051
LTSLCHLLCYW	11	Unmodified	_LTSLCHLLCYW_					0	0	0		sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1;sp|P16756|UL14_HCMVAUncharacterizedproteinUL14OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL14PE=3SV=2	sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	676.3302001953125	2	676.330501	1350.64645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.016	1	40.638	40.138	41.138	-0.37732								0	0	0	0.9387	1	15069	15069		12.241	2.0901	1				20656	18212	13111	13168	19835	19835					-0.014847565208583546
LTSLIKAGLTF	11	Unmodified	_LTSLIKAGLTF_					0	0	0		MON2|p.T1274Qfs*3|1|0.36|ENSG00000061987|chr12:62560894-62560894|T/-|frameshift_variant;MON2|p.V1435Afs*17|1|0.03|ENSG00000061987|chr12:62566430-62566431|-/CATCT|frameshift_variant;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;MON2|p.E989Nfs*2|1|0.16|ENSG00000061987|chr12:62552924-62552924|A/-|frameshift_variant;MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MON2|p.T1274Qfs*3|1|0.36|ENSG00000061987|chr12:62560894-62560894|T/-|frameshift_variant;MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MON2|p.A1027Vfs*94|1|0.03|ENSG00000061987|chr12:62553043-62553044|-/TTCTTTTT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	582.292236328125	2	582.355357	1162.69616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.401	1	55.401	54.901	55.901	0								0	0	0	0.95743	1	21273	21273		5.2969	3.2371	1				20657	1119;9338	13112	13169	19836	19836					0.1213201775105972
LTSLRKLWLMH	11	Unmodified	_LTSLRKLWLMH_					0	0	0		ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	MSMS	HCT116MG_D190212_S4	4	699.4091186523438	2	699.407932	1396.80131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.027	1	52.691	52.191	53.191	-0.33521								0	0	0	0.95636	1	19786	19786		2.9952	0	1				20658	3140	13113	13170	19837	19837					0.11878235675862925
LTSLVHKRL	9	Unmodified	_LTSLVHKRL_					0	0	0		nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	MSMS	HCT116MG_D190212_S2	2	356.22784423828125	3	356.229231	1065.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.711	1	51.527	51.027	52.027	-0.18369								0	0	0	0.76897	1	19847	19847		4.5289	1.5336	1				20659	4285	13114	13171	19838	19838					0.13565703876543012
LTSMVDDMWHY	11	Unmodified	_LTSMVDDMWHY_					0	0	0		ENST00000569980.1_1_16:57492139-57494533:+|nuORF;ENSG00000088682|ENST00000262507|COQ9	ENST00000569980.1_1_16:57492139-57494533:+|nuORF	ENST00000569980.1_1_16:57492139-57494533:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	699.408447265625	2	699.296856	1396.57916	0.7656	0.00053538	-0.43912	-0.00030708	0.32648	0.0002283	699.296233036004	54.416	0.15303	54.227	54.15	54.303	-0.1894					4	2	2	0	0	0	0.30732	1	20932	20932		38.176	33.647	1	24200000			20660	1498	13115	13172	19839	19839					-0.10326831522479551
LTSRNKNTV	9	Unmodified	_LTSRNKNTV_					0	0	0		ENST00000395246.5_1_5:130695039-130695069:+|nuORF	ENST00000395246.5_1_5:130695039-130695069:+|nuORF	ENST00000395246.5_1_5:130695039-130695069:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	516.7937622070312	2	516.793455	1031.57236	0.39449	0.00020387	0.45617	0.00023575	0.85067	0.00043962	516.7936373375201	47.394	1.4527	47.394	46.492	47.944	0					43	28	2	0	0	0	0.65706	1	18108	18108		7.9102	0	1	16441000			20661	7642	13116	13173	19840	19840					0.057833597034687045
LTSRRKRRRRM	11	Unmodified	_LTSRRKRRRRM_					0	0	0		ENST00000502669.5_1_4:8230233-8239327:+|nuORF;ENST00000245105.7_1_4:8230068-8238026:+|nuORF	ENST00000502669.5_1_4:8230233-8239327:+|nuORF	ENST00000502669.5_1_4:8230233-8239327:+|nuORF	MSMS	HCT116MG_D190212_S2	2	758.4663696289062	2	758.465501	1514.91645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.025	1	56.846	56.346	57.346	-0.17904								0	0	0	0.95581	1	22011	22011		3.2813	1.7994	1				20662	6787	13117	13174	19841	19841					0.17958777650210322
LTSTFAKPAP	10	Unmodified	_LTSTFAKPAP_					0	0	0			REV__ENSG00000116685|ENST00000376572|KIAA2013	REV__ENSG00000116685|ENST00000376572|KIAA2013	MULTI-MSMS	HCT116MG_D190212_S2	2	517.2929077148438	2	516.78985	1031.56515	0.053793	2.78E-05	0.22334	0.00011542	0.27713	0.00014322	516.7899087275181	30.645	0.77427	30.378	30.199	30.974	-0.26704					43	14	5	0	0	0	0.60826	1	11445	11445		27.629	2.2295	1	1792999999.9999998	+		20663	11589	13118	13175	19842	19842					0.050626271030296266
LTTFSDQGH	9	Unmodified	_LTTFSDQGH_					0	0	0		PLEKHG2|p.A1300Pfs*59|1|0.52|ENSG00000090924|chr19:39425028-39425028|G/-|frameshift_variant;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;ENSG00000090924|ENST00000425673|PLEKHG2	PLEKHG2|p.A1300Pfs*59|1|0.52|ENSG00000090924|chr19:39425028-39425028|G/-|frameshift_variant	PLEKHG2|p.A1300Pfs*59|1|0.52|ENSG00000090924|chr19:39425028-39425028|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	503.7821960449219	2	503.235439	1004.45632	0.40796	0.0002053	-0.442	-0.00022243	-0.034046	-1.7133E-05	503.2350725136924	27.923	0.46879	27.734	27.569	28.038	-0.18847					11	8	2	0	0	0	0.41514	1	10018	10018		21.747	1.3321	1	5680400			20664	1549	13119	13176	19843	19843					-0.04572583867229696
LTTGARTSP	9	Unmodified	_LTTGARTSP_					0	0	0		DUSP7|p.G209Afs*131|1|0.4|ENSG00000164086|chr3:52054266-52054266|C/-|frameshift_variant	DUSP7|p.G209Afs*131|1|0.4|ENSG00000164086|chr3:52054266-52054266|C/-|frameshift_variant	DUSP7|p.G209Afs*131|1|0.4|ENSG00000164086|chr3:52054266-52054266|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	452.26092529296875	2	452.248349	902.482145	0.19251	8.7063E-05	0.079692	3.604E-05	0.2722	0.0001231	452.24842296735517	27.663	0.20735	27.321	27.191	27.398	-0.34201					5	3	2	0	0	0	0.18783	1	10079	10079		28.487	6.7402	1	7210100			20665	739	13120	13177	19844	19844					0.027003103750644186
LTTKRFLEL	9	Unmodified	_LTTKRFLEL_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MSMS	HCT116MG_D190212_S3	3	374.228515625	3	374.229008	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.339	1	41.037	40.537	41.537	-0.30185								0	0	0	0.76669	1	15375	15375		8.1555	1.9637	1				20666	1787	13121	13178	19845	19845					0.11014864436833705
LTTKRFLEL	9	Unmodified	_LTTKRFLEL_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MSMS	HCT116MG_D190212_S4	4	374.228515625	3	374.229008	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.478	1	39.098	38.598	39.598	-0.38055								0	0	0	0.768	1	14506	14506		4.897	2.1618	1				20667	1787	13121	13178	19846	19846					0.11014864436833705
LTTLQEIIF	9	Unmodified	_LTTLQEIIF_					0	0	0		ENST00000329378.7_2_5:93918161-93954215:-|nuORF	ENST00000329378.7_2_5:93918161-93954215:-|nuORF	ENST00000329378.7_2_5:93918161-93954215:-|nuORF	MSMS	HCT116MG_D190212_S1	1	539.7188720703125	2	539.313158	1076.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.96	1	28.96	28.46	29.46	0								0	0	0	0.76902	1	10567	10567		4.3292	0.38484	1				20668	7154	13122	13179	19847	19847					0.07652066934338109
LTTRIIEEP	9	Unmodified	_LTTRIIEEP_					0	0	0		ENST00000512486.5_1_5:95055354-95055441:-|nuORF	ENST00000512486.5_1_5:95055354-95055441:-|nuORF	ENST00000512486.5_1_5:95055354-95055441:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	357.8729248046875	3	357.873001	1070.59717	-0.31053	-0.00011113	0.23655	8.4656E-05	-0.073974	-2.6473E-05	357.873033249952	17.145	0.46826	17.229	17.068	17.537	0.084467					15	8	4	0	0	0	0.19461	1	5736	5736		32.037	1.334	1	10646000			20669	8508	13123	13180	19848	19848					0.06469994786198185
LTTRPSTGWC	10	Unmodified	_LTTRPSTGWC_					0	0	0		ENST00000464326.1_1_9:19108723-19116385:-|nuORF	ENST00000464326.1_1_9:19108723-19116385:-|nuORF	ENST00000464326.1_1_9:19108723-19116385:-|nuORF	MSMS	HCT116MG_D190212_S3	3	561.2739868164062	2	561.274041	1120.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.258	1	48.942	48.442	49.442	-0.31596								0	0	0	0.91638	1	18545	18545		12.241	0	1				20670	8081	13124	13181	19849	19849					-0.021916889225394698
LTTRRGLVE	9	Unmodified	_LTTRRGLVE_					0	0	0			REV__UGT2B17|p.P244R|1|0.23|ENSG00000197888|chr4:68565714-68565714|G/C|missense_variant	REV__UGT2B17|p.P244R|1|0.23|ENSG00000197888|chr4:68565714-68565714|G/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	522.7718505859375	2	522.811648	1043.60874	0.52159	0.00027269	0.05916	3.093E-05	0.58075	0.00030362	522.81153935885	51.953	1.6992	51.769	51.013	52.712	-0.18368					79	32	4	0	0	0	0.69954	1	20167	20167		5.2969	0.96765	1	155010000	+		20671	18040	13125	13182	19850	19850					0.08868236600187629
LTTRRRRRLF	10	Unmodified	_LTTRRRRRLF_					0	0	0		ENST00000368222.7_1_1:156675302-156675365:-|nuORF	ENST00000368222.7_1_1:156675302-156675365:-|nuORF	ENST00000368222.7_1_1:156675302-156675365:-|nuORF	MSMS	HCT116MG_D190212_S1	1	687.9326171875	2	687.931286	1373.84802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.32	1	40.32	39.82	40.82	0								0	0	0	0.96453	1	15151	15151		1.4819	0.15237	1				20672	7399	13126	13183	19851	19851					0.17604856342018138
LTTSVNDESLY	11	Unmodified	_LTTSVNDESLY_					0	0	0		nc|ENSG00000103599|Q86VS3-5|IQCH;IQCH|p.I510Sfs*2|1|0.37|ENSG00000103599|chr15:67388896-67388896|A/-|frameshift_variant;ENSG00000103599|ENST00000335894|IQCH	nc|ENSG00000103599|Q86VS3-5|IQCH	nc|ENSG00000103599|Q86VS3-5|IQCH	MULTI-SECPEP	HCT116MG_D190212_S2	2	621.81640625	2	621.298433	1240.58231	0.42015	0.00026104	-1.4033	-0.00087187	-0.98315	-0.00061083	621.2975486771118	41.005	0.31076	40.935	40.777	41.088	-0.069622					7	5	2	0	0	0	0.31813	1	15484	15484		29.437	6.7009	1	20852000			20673	1905	13127	13184	19852	19852					-0.028355418724686388
LTTSVYTP	8	Unmodified	_LTTSVYTP_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S4	4	441.2342529296875	2	441.234376	880.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.627	1	36.242	35.742	36.742	-0.38486								0	0	0	0.8837	1	13411	13411		14.582	0	1				20674	5624	13128	13185	19853	19853					0.009189873949480898
LTTSVYTP	8	Unmodified	_LTTSVYTP_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S4	4	441.2342834472656	2	441.234376	880.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.671	1	38.289	37.789	38.789	-0.38163								0	0	0	0.8217	1	14181	14181		20.871	0	1				20675	5624	13128	13185	19854	19854					0.009189873949480898
LTVFVFKRA	9	Unmodified	_LTVFVFKRA_					0	0	0		ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2	ENSG00000146426|ENST00000682666|TIAM2	ENSG00000146426|ENST00000682666|TIAM2	MULTI-SECPEP	HCT116MG_D190212_S2	2	540.3324584960938	2	540.831852	1079.64915	0.73614	0.00039813	2.8474	0.0015399	3.5835	0.0019381	540.834541723282	44.665	0.26095	44.58	44.482	44.743	-0.084797					7	4	2	0	0	0	0.26009	1	16989	16989		10.824	6.0679	1	8334300			20676	3949	13129	13186	19855	19855					0.11251202990615639
LTVGISKLL	9	Unmodified	_LTVGISKLL_					0	0	0			REV__VPS13A|p.A2813V|1|0.23|ENSG00000197969|chr9:77366839-77366839|C/T|missense_variant	REV__VPS13A|p.A2813V|1|0.23|ENSG00000197969|chr9:77366839-77366839|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.3124694824219	2	472.312961	942.611368	0.19165	9.0518E-05	-0.62022	-0.00029294	-0.42857	-0.00020242	472.31252655289217	54.056	0.15424	53.867	53.79	53.945	-0.1894					4	2	2	0	0	0	0.30117	1	20828	20828		30.637	3.0077	1	16631000	+		20677	18048	13130	13187	19856	19856					0.13776692005137647
LTVKNASGTKA	11	Unmodified	_LTVKNASGTKA_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S4	4	545.3164672851562	2	545.316763	1088.61897	0.36269	0.00019778	0.2676	0.00014593	0.63029	0.00034371	545.3167109902226	48.895	2.3687	48.53	47.782	50.151	-0.365					128	56	4	0	0	0	0.74191	1	18409	18409		2.7352	2.7352	1	17010000			20678	4258;9506	13131	13188	19857	19857					0.07820799534761136
LTVKRVPE	8	Unmodified	_LTVKRVPE_					0	0	0			REV__ENSG00000169379|ENST00000394222|ARL13B	REV__ENSG00000169379|ENST00000394222|ARL13B	MSMS	HCT116MG_D190212_S4	4	471.2912292480469	2	471.292559	940.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.863	1	43.489	42.989	43.989	-0.37433								0	0	0	0.8837	1	16139	16139		8.5933	1.8701	1		+		20679	13241	13132	13189	19858	19858					0.09790350685523208
LTVLERRY	8	Unmodified	_LTVLERRY_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1;ENST00000526699.5_1_11:118505736-118509975:+|nuORF	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-MSMS	HCT116MG_D190212_S1	1	525.3074951171875	2	525.308741	1048.60293	0.41179	0.00021632	-1.6045	-0.00084287	-1.1927	-0.00062655	525.3069319347402	45.619	0.67923	45.619	45.295	45.975	0					18	12	3	0	0	0	0.62424	1	17293	17293		30.225	5.5509	1	7538500			20680	936	13133	13190	19859	19859					0.08057138088520333
LTVLSQSVY	9	Unmodified	_LTVLSQSVY_					0	0	0			REV__ENSG00000269964|ENST00000684080|MEI4	REV__ENSG00000269964|ENST00000684080|MEI4	MULTI-MSMS	HCT116MG_D190212_S2	2	505.2820739746094	2	505.281857	1008.54916	0.7562	0.00038209	-0.45407	-0.00022943	0.30213	0.00015266	505.2815512617315	33.238	0.20818	33.045	32.914	33.123	-0.19297					6	3	2	0	0	0	0.29516	1	12352	12352		31.268	2.7738	1	19211000	+		20681	14438	13134	13191	19860	19860					0.04522920866145341
LTVNMMDFF	9	Unmodified	_LTVNMMDFF_					0	0	0			REV__ENSG00000138135|ENST00000371852|CH25H	REV__ENSG00000138135|ENST00000371852|CH25H	MSMS	HCT116MG_D190212_S3	3	559.2552490234375	2	559.256471	1116.49839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.348	1	51.036	50.536	51.536	-0.31166								0	0	0	0.76834	1	19386	19386		6.7232	0	1		+		20682	12212	13135	13192	19861	19861					-0.05520067774727977
LTVRIKHLS	9	Unmodified	_LTVRIKHLS_					0	0	0		ENST00000258886.12_1_15:78791558-78791591:+|nuORF	ENST00000258886.12_1_15:78791558-78791591:+|nuORF	ENST00000258886.12_1_15:78791558-78791591:+|nuORF	MSMS	HCT116MG_D190212_S1	1	356.2278137207031	3	356.229231	1065.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.72	1	41.72	41.22	42.22	0								0	0	0	0.76886	1	15717	15717		4.897	0	1				20683	6834	13136	13193	19862	19862					0.13565703876543012
LTVYSDPD	8	Unmodified	_LTVYSDPD_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MSMS	HCT116MG_D190212_S4	4	455.24908447265625	2	455.21364	908.412728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.824	1	35.438	34.938	35.938	-0.38606								0	0	0	0.8837	1	13087	13087		9.3474	0	1		+		20684	12992	13137	13194	19863	19863					-0.04514193364377661
LTVYVKKG	8	Unmodified	_LTVYVKKG_					0	0	0			REV__ENSG00000130561|ENST00000409110|SAG	REV__ENSG00000130561|ENST00000409110|SAG	MSMS	HCT116MG_D190212_S1	1	454.28570556640625	2	454.284203	906.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.285	1	38.285	37.785	38.785	0								0	0	0	0.8837	1	14329	14329		9.3474	0.75416	1		+		20685	11930	13138	13195	19864	19864					0.09683849799569089
LTWSAAEGD	9	Unmodified	_LTWSAAEGD_					0	0	0		ENST00000544604.6_1_22:29444417-29445563:+|nuORF	ENST00000544604.6_1_22:29444417-29445563:+|nuORF	ENST00000544604.6_1_22:29444417-29445563:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	475.2171630859375	2	475.216714	948.418876	0.47244	0.00022451	0.0041666	1.98E-06	0.47661	0.00022649	475.2167188015452	31.646	0.26	31.397	31.25	31.51	-0.24883					8	4	2	0	0	0	0.32162	1	11704	11704		28.487	1.6032	1	18984000			20686	8709	13139	13196	19865	19865					-0.05739675132861066
LTYCSAGIFF	10	Unmodified	_LTYCSAGIFF_					0	0	0			REV__tr|U7T022|U7T022_FUSNUPrepilintypeIVendopeptidasepeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00779PE=3SV=1	REV__tr|U7T022|U7T022_FUSNUPrepilintypeIVendopeptidasepeptidasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00779PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	561.2703857421875	2	561.270435	1120.52632	0.37113	0.0002083	0.39472	0.00022154	0.76585	0.00042985	561.2706735496475	21.896	0.99698	21.897	21.149	22.146	0.00074577					28	18	3	0	0	0	0.64004	1	7447	7447		25.399	6.0374	1	7953300	+		20687	17888	13140	13197	19866	19866					-0.029124215229785477
LTYCTESFSL	10	Unmodified	_LTYCTESFSL_					0	0	0			REV__OR10Z1|p.L284Pfs*3|1|0.42|ENSG00000198967|chr1:158607282-158607283|-/C|frameshift_variant	REV__OR10Z1|p.L284Pfs*3|1|0.42|ENSG00000198967|chr1:158607282-158607283|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	582.2687377929688	2	582.26809	1162.52163	0.34771	0.00020246	-2.4739	-0.0014405	-2.1262	-0.001238	582.2668826455877	46.844	0.31146	46.473	46.328	46.64	-0.37134					8	5	2	0	0	0	0.78781	1	17354	17354		13.042	3.6593	1	5163400	+		20688	17364	13141	13198	19867	19867					-0.053133504563902534
LTYEPVKER	9	Unmodified	_LTYEPVKER_					0	0	0			REV__nc|ENSG00000062038|P22223-2|CDH3	REV__nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	HCT116MG_D190212_S4	4	378.87652587890625	3	378.876634	1133.60807	0.051716	1.9594E-05	0.1642	6.2211E-05	0.21591	8.1805E-05	378.876583919262	35.052	0.25956	34.666	34.49	34.75	-0.38605					10	4	3	0	0	0	0.61923	1	12824	12824		6.6304	3.0433	1	7655300	+		20689	10676	13142	13199	19868	19868					0.04661397160475644
LTYSYFCSLY	10	Unmodified	_LTYSYFCSLY_					0	0	0			REV__OR4A16|p.T24Hfs*12|1|0.43|ENSG00000181961|chr11:55343264-55343264|A/-|frameshift_variant	REV__OR4A16|p.T24Hfs*12|1|0.43|ENSG00000181961|chr11:55343264-55343264|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	630.2858276367188	2	630.286282	1258.55801	0.54803	0.00034541	-1.3295	-0.00083799	-0.78152	-0.00049258	630.2850834861387	52.632	0.31384	52.326	52.195	52.509	-0.30639					6	5	2	0	0	0	0.86339	1	19938	19938		6.7232	0.51738	1	4087000	+		20690	17368	13143	13200	19869	19869					-0.06092473559692735
LTYTSTDEH	9	Unmodified	_LTYTSTDEH_					0	0	0		ENST00000522380.2_1_5:170346486-170397534:+|nuORF;nc|ENSG00000204764|Q9H2T7-2|RANBP17;RANBP17|p.N641Tfs*35|2|0.1|ENSG00000204764|chr5:171183218-171183218|A/-|frameshift_variant;ENSG00000204764|ENST00000523189|RANBP17	ENST00000522380.2_1_5:170346486-170397534:+|nuORF	ENST00000522380.2_1_5:170346486-170397534:+|nuORF	MSMS	HCT116MG_D190212_S2	2	533.73974609375	2	533.738011	1065.46147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.315	1	14.989	14.489	15.489	-0.32684								0	0	0	0.76793	1	5080	5080		4.3292	0	1				20691	6352	13144	13201	19870	19870					-0.06864324795287757
LVAASQAALGL	11	Unmodified	_LVAASQAALGL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	1013.5997924804688	1	1013.59897	1012.5917	0.66493	0.00067398	-0.15851	-0.00016067	0.50642	0.00051331	1013.5987778052751	48.229	0.30916	48.229	48.048	48.357	0					12	5	3	0	0	0	0.099557	1	18341	18341		89.401	10.673	1	62102000		+	20692	554	13145	13202	19871	19871					0.08590315994376851
LVAASQAALGL	11	Unmodified	_LVAASQAALGL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	507.3030700683594	2	507.303124	1012.5917	0.17084	8.6669E-05	-0.16423	-8.3316E-05	0.0066102	3.3534E-06	507.3030140883851	48.231	0.30916	48.231	48.048	48.357	0					18	5	4	0	0	0	0.034401	1	18347	18347		110.67	10.876	1	122800000		+	20693	554	13145	13202	19872	19872					0.08590315994376851
LVAASQAALGL	11	Unmodified	_LVAASQAALGL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S2	2	507.3043212890625	2	507.303124	1012.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.415	1	48.271	47.771	48.771	-0.1437								0	0	0	0.80071	1	18496	18496		32.786	7.3864	1			+	20694	554	13145	13202	19873	19873					0.08590315994376851
LVAASQAALGL	11	Unmodified	_LVAASQAALGL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	507.3031311035156	2	507.303124	1012.5917	0.51757	0.00026256	-0.42824	-0.00021725	0.089331	4.5318E-05	507.302908895603	48.527	0.67364	48.211	47.984	48.657	-0.31596					29	12	4	0	0	0	0.031015	2	18238	18238;18323		125.53	14.242	1	45066000		+	20695	554	13145	13202	19874;19875	19874					0.08590315994376851
LVAASQAALGL	11	Unmodified	_LVAASQAALGL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	1013.5994262695312	1	1013.59897	1012.5917	0.85819	0.00086986	-0.16635	-0.00016861	0.69184	0.00070125	1013.5988082645085	48.482	0.36344	48.166	48.036	48.399	-0.31596					15	6	3	0	0	0	0.099557	1	18241	18241		89.401	10.673	1	17400000		+	20696	554	13145	13202	19876	19876					0.08590315994376851
LVAASQAALGL	11	Unmodified	_LVAASQAALGL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	507.3033142089844	2	507.303124	1012.5917	0.064618	3.2781E-05	0.22549	0.00011439	0.29011	0.00014717	507.3031989005196	48.528	0.66953	48.16	47.987	48.657	-0.36727					41	20	3	0	0	0	0.030983	1	17955	17955		103.35	3.5546	1	42604000		+	20697	554	13145	13202	19877	19877					0.08590315994376851
LVAASQAALGL	11	Unmodified	_LVAASQAALGL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	1013.5993041992188	1	1013.59897	1012.5917	0.49857	0.00050535	0.48969	0.00049635	0.98826	0.0010017	1013.5993126037009	48.519	0.39359	48.152	47.987	48.381	-0.36728					15	12	2	0	0	0	0.099557	1	17977	17977		89.401	10.673	1	14121000		+	20698	554	13145	13202	19878	19878					0.08590315994376851
LVAASQAALGL	11	Unmodified	_LVAASQAALGL_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1013.59897	1012.5917	0.88301	0.00089501	-0.29637	-0.0003004	0.58664	0.00059461	1013.5988101558088	48.354	0.20331	48.21	48.134	48.338	-0.1437	0.020889	-0.00045484	NaN	89.401	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26583000		+	20699	554	13145	13202							0.08590315994376851
LVADQRPA	8	Unmodified	_LVADQRPA_					0	0	0			REV__ENST00000510568.1_1_4:1235165-1235387:-|nuORF	REV__ENST00000510568.1_1_4:1235165-1235387:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	435.2446594238281	2	435.245609	868.476666	-4.9806E-05	-2.1678E-08	-0.63896	-0.00027811	-0.63901	-0.00027813	435.2451351800768	40.04	0.18488	39.739	39.666	39.851	-0.30137					5	3	2	0	0	0	0.48901	1	14896	14896		42.095	2.1372	1	5086400	+		20700	16177	13146	13203	19879	19879					0.037166315832337204
LVADQRPA	8	Unmodified	_LVADQRPA_					0	0	0			REV__ENST00000510568.1_1_4:1235165-1235387:-|nuORF	REV__ENST00000510568.1_1_4:1235165-1235387:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	435.245609	868.476666	-0.16225	-7.0617E-05	-0.048692	-2.1193E-05	-0.21094	-9.181E-05	435.2455109238243	39.72	0.2597	39.72	39.605	39.865	0	-0.0090996	0.00032983	NaN	42.095	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4632300	+		20701	16177	13146	13203							0.037166315832337204
LVADQRPA	8	Unmodified	_LVADQRPA_					0	0	0			REV__ENST00000510568.1_1_4:1235165-1235387:-|nuORF	REV__ENST00000510568.1_1_4:1235165-1235387:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	435.245609	868.476666	-4.9806E-05	-2.1678E-08	-0.63896	-0.00027811	-0.63901	-0.00027813	435.2451351800768	40.04	0.18488	39.739	39.666	39.851	-0.30137	0.0090996	-0.000184	NaN	42.095	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5086400	+		20702	16177	13146	13203							0.037166315832337204
LVAKYLQPIK	10	Unmodified	_LVAKYLQPIK_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MSMS	HCT116MG_D190212_S1	1	586.8759155273438	2	586.873717	1171.73288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.146	1	33.146	32.646	33.646	0								0	0	0	0.93854	1	12256	12256		7.2892	1.0834	1		+		20703	11585	13147	13204	19880	19880					0.15388314367646672
LVALKPDSLPV	11	Unmodified	_LVALKPDSLPV_					0	0	0			REV__ENSG00000108479|ENST00000588479|GALK1	REV__ENSG00000108479|ENST00000588479|GALK1	MULTI-SECPEP	HCT116MG_D190212_S2	2	575.9732666015625	2	576.355357	1150.69616	0.26943	0.00015529	-0.95731	-0.00055175	-0.68788	-0.00039646	576.3549355193187	53.737	1.1355	53.548	52.809	53.945	-0.1894					27	21	2	0	0	0	0.3621	1	20712	20712		14.405	6.4952	1	38829000	+		20704	11347	13148	13205	19881	19881					0.1268401775107577
LVARVWTLPP	10	Unmodified	_LVARVWTLPP_					0	0	0		ENST00000311956.8_1_11:46700251-46700590:-|nuORF	ENST00000311956.8_1_11:46700251-46700590:-|nuORF	ENST00000311956.8_1_11:46700251-46700590:-|nuORF	MSMS	HCT116MG_D190212_S2	2	576.4932250976562	2	576.350409	1150.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.539	1	38.454	37.954	38.954	-0.084618								0	0	0	0.93576	1	14479	14479		7.9102	2.6795	1				20705	7061	13149	13206	19882	19882					0.116948745363743
LVASSQLLV	9	Unmodified	_LVASSQLLV_					0	0	0			REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	MULTI-MSMS	HCT116MG_D190212_S2	2	465.28692626953125	2	465.286943	928.559333	0.51032	0.00023745	-1.4982	-0.00069708	-0.98786	-0.00045964	465.2861686886007	47.026	0.56661	46.904	46.666	47.233	-0.12175					18	10	2	0	0	0	0.066823	1	17931	17931		66.457	5.0992	1	28750000	+		20706	12880	13150	13207	19883	19883					0.09219528591381732
LVAVKRVNR	9	Unmodified	_LVAVKRVNR_					0	0	0		NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant;ENSG00000169418|ENST00000368680|NPR1	NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant	NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	352.2327880859375	3	352.232975	1053.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.218	1	62.218	61.718	62.718	0								0	0	0	0.77018	1	24021	24021		0.26902	0	1				20707	5072	13151	13208	19884	19884					0.15240525970693852
LVDAFVEHRY	10	Unmodified	_LVDAFVEHRY_					0	0	0		CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	624.8220825195312	2	624.822212	1247.62987	0.4861	0.00030372	-0.46568	-0.00029097	0.02041	1.2753E-05	624.8218883563204	37.866	0.20807	37.866	37.707	37.916	0					5	3	2	0	0	0	0.33085	1	14178	14178		47.732	14.946	1	8920900			20708	483	13152	13209	19885	19885					0.01596201909046613
LVDAFVEHRY	10	Unmodified	_LVDAFVEHRY_					0	0	0		CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	416.8839111328125	3	416.8839	1247.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.907	1	37.907	37.407	38.407	0								0	0	0	0.77487	1	14176	14176		23.016	14.729	1				20709	483	13152	13209	19886	19886					0.01596201909046613
LVDAFVEHRY	10	Unmodified	_LVDAFVEHRY_					0	0	0		CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	624.822212	1247.62987	0.2867	0.00017914	0.36109	0.00022562	0.6478	0.00040476	624.8223359501928	37.872	0.15474	37.779	37.702	37.857	-0.09301	-0.043614	0.000323	NaN	47.732	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8308300			20710	483	13152	13209							0.01596201909046613
LVDASGEFTE	10	Unmodified	_LVDASGEFTE_					0	0	0			REV__ENST00000513016.5_1_5:82832752-82876250:+|nuORF	REV__ENST00000513016.5_1_5:82832752-82876250:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2487182617188	2	534.248212	1066.48187	0.45344	0.00024225	0.46334	0.00024754	0.91678	0.00048979	534.2484487426627	46.075	0.41091	45.973	45.761	46.172	-0.1014					11	7	2	0	0	0	0.4604	1	17559	17559		37.974	11.706	1	18961000	+		20711	10583	13153	13210	19887	19887					-0.048711541354578
LVDMAKKL	8	Unmodified	_LVDMAKKL_					0	0	0		nc|ENSG00000102383|Q96MV8-2|ZDHHC15;nc|ENSG00000102383|Q96MV8-3|ZDHHC15;ENSG00000102383|ENST00000373367|ZDHHC15	nc|ENSG00000102383|Q96MV8-2|ZDHHC15	nc|ENSG00000102383|Q96MV8-2|ZDHHC15	MSMS	HCT116MG_D190212_S4	4	459.2800598144531	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.443	1	40.064	39.564	40.564	-0.37828								0	0	0	0.8837	1	14837	14837		14.582	5.9884	1				20712	1837	13154	13211	19888	19888					0.07996490064874706
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	HCT116MG_D190212_S1	1	1012.4992065429688	1	1012.49859	1011.49131	0.79017	0.00080004	-0.20245	-0.00020498	0.58771	0.00059506	1012.4982668741957	44.647	0.31309	44.647	44.464	44.777	0					12	5	3	0	0	0	0.0082751	1	16901	16901		117.6	75.504	1	58049000			20713	2104	13155	13212	19889	19889					-0.01397341059282553
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	HCT116MG_D190212_S2	2	1012.4986572265625	1	1012.49859	1011.49131	0.89206	0.0009032	0.12435	0.0001259	1.0164	0.0010291	1012.4985148285746	44.795	0.62696	44.711	44.482	45.109	-0.084797					30	11	4	0	0	0	0.0082751	1	16997	16997		117.6	62.825	1	223970000			20714	2104	13155	13212	19890	19890					-0.01397341059282553
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	HCT116MG_D190212_S3	3	1012.4992065429688	1	1012.49859	1011.49131	0.76718	0.00077676	-0.27345	-0.00027687	0.49373	0.0004999	1012.4984406358014	44.964	0.39959	44.654	44.489	44.889	-0.30927					15	7	3	0	0	0	0.0082751	1	16826	16826		117.6	73.192	1	17701000			20715	2104	13155	13212	19891	19891					-0.01397341059282553
LVDQRVAEY	9	Unmodified	_LVDQRVAEY_					0	0	0		POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK	POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant	POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	546.7880249023438	2	546.787838	1091.56112	0.40557	0.00022176	-0.13057	-7.1392E-05	0.27501	0.00015037	546.7878064069292	29.919	0.25981	29.919	29.789	30.049	0					9	4	3	0	0	0	0.011132	1	10976	10976		110.55	54.376	1	27275000			20716	3788	13156	13213	19892	19892					0.019005376093446102
LVDQRVAEY	9	Unmodified	_LVDQRVAEY_					0	0	0		POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant;ENSG00000143157|ENST00000367876|POGK	POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant	POGK|p.P424Rfs*18|1|0.42|ENSG00000143157|chr1:166849845-166849845|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	546.78759765625	2	546.787838	1091.56112	0.14157	7.7408E-05	-0.31467	-0.00017206	-0.1731	-9.4647E-05	546.7875077790618	30.292	0.25693	30.007	29.873	30.13	-0.28453					10	4	3	0	0	0	0.032914	1	11139	11139		83.429	31.799	1	99032000			20717	3788	13156	13213	19893	19893					0.019005376093446102
LVDRVFAARQ	10	Unmodified	_LVDRVFAARQ_					0	0	0			REV__ENSG00000153147|ENST00000283131|SMARCA5	REV__ENSG00000153147|ENST00000283131|SMARCA5	MSMS	HCT116MG_D190212_S4	4	392.2278747558594	3	392.22789	1173.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.44	1	56.134	55.634	56.634	-0.30626								0	0	0	0.96453	1	21157	21157		0.62683	0	1		+		20718	12644	13157	13214	19894	19894					0.08195614382839267
LVDSKGFDEY	10	Unmodified	_LVDSKGFDEY_					0	0	0		ENSG00000164687|ENST00000297258|FABP5	ENSG00000164687|ENST00000297258|FABP5	ENSG00000164687|ENST00000297258|FABP5	MSMS	HCT116MG_D190212_S1	1	586.77734375	2	586.777136	1171.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.471	1	36.471	35.971	36.971	0								0	0	0	0.68041	1	13596	13596		38.615	8.3899	1				20719	4714	13158	13215	19895	19895					-0.0391889221002657
LVDSKGFDEY	10	Unmodified	_LVDSKGFDEY_					0	0	0		ENSG00000164687|ENST00000297258|FABP5	ENSG00000164687|ENST00000297258|FABP5	ENSG00000164687|ENST00000297258|FABP5	MULTI-MSMS	HCT116MG_D190212_S2	2	586.7774658203125	2	586.777136	1171.53972	0.69892	0.00041011	0.04533	2.6598E-05	0.74425	0.00043671	586.7774297545122	36.433	0.31116	36.305	36.122	36.434	-0.12799					11	5	3	0	0	0	0.112	1	13634	13634		71.708	29.868	1	33214000			20720	4714	13158	13215	19896	19896					-0.0391889221002657
LVDSKGFDEY	10	Unmodified	_LVDSKGFDEY_					0	0	0		ENSG00000164687|ENST00000297258|FABP5	ENSG00000164687|ENST00000297258|FABP5	ENSG00000164687|ENST00000297258|FABP5	MULTI-MSMS	HCT116MG_D190212_S3	3	586.777099609375	2	586.777136	1171.53972	0.35749	0.00020977	0.96428	0.00056582	1.3218	0.00077559	586.7773664967914	36.628	0.26056	36.327	36.145	36.405	-0.30113					7	4	2	0	0	0	0.50387	1	13569	13569		34.932	0	1	5344800			20721	4714	13158	13215	19897	19897					-0.0391889221002657
LVDSRWFKQWK	11	Unmodified	_LVDSRWFKQWK_					0	0	0		nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15;ENST00000546718.5_1_12:62654195-62688116:+|nuORF;ENST00000551206.5_1_12:62654195-62696719:+|nuORF;ENST00000537297.2_1_12:62654195-62698555:+|nuORF;ENST00000548524.5_1_12:62654195-62708744:+|nuORF;ENST00000550632.5_1_12:62654195-62749153:+|nuORF;nc|ENSG00000135655|Q9Y4E8-4|USP15;USP15|p.P403Tfs*14|1|0.17|ENSG00000135655|chr12:62383950-62383951|-/A|frameshift_variant;USP15|p.E473Nfs*8|1|0.1|ENSG00000135655|chr12:62384240-62384240|A/-|frameshift_variant;USP15|p.R760Kfs*4|2|0.23|ENSG00000135655|chr12:62391853-62391854|-/A|frameshift_variant;USP15|p.P943Lfs*17|1|0.43|ENSG00000135655|chr12:62404250-62404250|T/-|frameshift_variant	nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	MSMS	HCT116MG_D190212_S1	1	746.9105224609375	2	746.906611	1491.79867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.897	1	34.897	34.397	35.397	0								0	0	0	0.86918	1	12963	12963		36.506	8.0117	1				20722	3366	13159	13216	19898	19898					0.07244103542552693
LVDYIYQGP	9	Unmodified	_LVDYIYQGP_					0	0	0		nc|ENSG00000106113|Q13324-6|CRHR2;nc|ENSG00000106113|Q13324-5|CRHR2;nc|ENSG00000106113|Q13324-4|CRHR2;nc|ENSG00000106113|Q13324-3|CRHR2;nc|ENSG00000106113|Q13324-7|CRHR2;ENSG00000106113|ENST00000471646|CRHR2;nc|ENSG00000106113|Q13324-2|CRHR2	nc|ENSG00000106113|Q13324-6|CRHR2	nc|ENSG00000106113|Q13324-6|CRHR2	MSMS	HCT116MG_D190212_S2	2	534.271728515625	2	534.274032	1066.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.36	1	28.03	27.53	28.53	-0.32987								0	0	0	0.64498	1	10341	10341		21.747	3.6003	1				20723	2058	13160	13217	19899	19899					0.0029063434908493946
LVEDYGMEL	9	Unmodified	_LVEDYGMEL_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12;ENST00000490962.1_1_3:72925982-72926321:-|nuORF	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S2	2	1068.493896484375	1	1068.49179	1067.48451	0.7526	0.00080415	-0.11318	-0.00012093	0.63942	0.00068322	1068.4917584987193	52.199	0.25831	52.012	51.832	52.09	-0.18725					6	4	2	0	0	0	0.035914	1	20056	20056		81.613	26.84	1	18045000			20724	6126	13161	13218	19900	19900					-0.04653022002162288
LVEEPKLWM	9	Unmodified	_LVEEPKLWM_					0	0	0			REV__TBC1D8B|p.L42Sfs*19|1|0.31|ENSG00000133138|chrX:106802971-106802971|G/-|frameshift_variant	REV__TBC1D8B|p.L42Sfs*19|1|0.31|ENSG00000133138|chrX:106802971-106802971|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	382.2068176269531	3	382.207216	1143.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.768	1	62.768	62.268	63.268	0								0	0	0	0.77018	1	24243	24243		0.26902	0	1		+		20725	12021	13162	13219	19901	19901					0.033761269194883425
LVEFFIDLVL	10	Unmodified	_LVEFFIDLVL_					0	0	0			REV__ENSG00000110881|ENST00000447966|ASIC1	REV__ENSG00000110881|ENST00000447966|ASIC1	MSMS	HCT116MG_D190212_S3	3	604.3541870117188	2	604.352283	1206.69001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.312	1	47.996	47.496	48.496	-0.31596								0	0	0	0.91906	1	18167	18167		11.64	0.81637	1		+		20726	11412	13163	13220	19902	19902					0.09493499519567195
LVEGPPGPAGP	11	Unmodified	_LVEGPPGPAGP_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant;COL11A1|p.P546Lfs*87|2|0.28|ENSG00000060718|chr1:103008511-103008511|C/-|frameshift_variant;COL11A1|p.G1096Vfs*102|1|0.07|ENSG00000060718|chr1:102940424-102940424|C/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	495.7666015625	2	495.766374	989.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.269	1	26.958	26.458	27.458	-0.3114								0	0	0	0.93374	1	9754	9754		14.838	0	1				20727	510	13164	13221	19903	19903					0.023017675519099612
LVFCIGFVVGP	11	Unmodified	_LVFCIGFVVGP_					0	0	0			REV__ENSG00000101337|ENST00000398022|TM9SF4	REV__ENSG00000101337|ENST00000398022|TM9SF4	MSMS	HCT116MG_D190212_S4	4	575.8189697265625	2	575.820095	1149.62564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.379	1	36.995	36.495	37.495	-0.3839								0	0	0	0.9414	1	13715	13715		10.824	1.4408	1		+		20728	11122	13165	13222	19904	19904					0.05681021161763056
LVFFAVAQL	9	Unmodified	_LVFFAVAQL_					0	0	0			REV__nc|ENSG00000174950|Q6UWJ8-2|CD164L2	REV__nc|ENSG00000174950|Q6UWJ8-2|CD164L2	MSMS	HCT116MG_D190212_S1	1	504.3014831542969	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.27	1	43.27	42.77	43.77	0								0	0	0	0.69272	1	16342	16342		19.439	6.9074	1		+		20729	13499	13166	13223	19905	19905					0.08212422833662458
LVFFRKKWRKW	11	Unmodified	_LVFFRKKWRKW_					0	0	0			REV__nc|ENSG00000163618|Q9ULU8-2|CADPS	REV__nc|ENSG00000163618|Q9ULU8-2|CADPS	MSMS	HCT116MG_D190212_S3	3	532.1783447265625	3	531.989146	1592.94561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.786	1	50.472	49.972	50.972	-0.31381								0	0	0	0.96149	1	19159	19159		0.08335	0.08335	1		+		20730	12935	13167	13224	19906	19906					0.1728524521813597
LVFRHAPIRQP	11	Unmodified	_LVFRHAPIRQP_					0	0	0			REV__nc|ENSG00000064726|Q9H0C5-2|BTBD1	REV__nc|ENSG00000064726|Q9H0C5-2|BTBD1	MSMS	HCT116MG_D190212_S1	1	667.3948364257812	2	667.396213	1332.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.144	1	42.144	41.644	42.644	0								0	0	0	0.95023	1	15888	15888		6.2058	0.47393	1		+		20731	10059	13168	13225	19907	19907					0.12479557953543008
LVGGREPAA	9	Unmodified	_LVGGREPAA_					0	0	0			REV__nc|ENSG00000101213|Q13882-2|PTK6	REV__nc|ENSG00000101213|Q13882-2|PTK6	MULTI-MSMS	HCT116MG_D190212_S1	1	869.4865112304688	1	869.483942	868.476666	0.5335	0.00046387	1.8427	0.0016022	2.3762	0.002066	869.4855579598178	39.683	0.20767	39.683	39.605	39.813	0					5	3	2	0	0	0	0.33687	1	14929	14929		26.884	5.137	1	4708200	+		20732	17095	13169	13226	19908	19908					0.03716631583222352
LVGGREPAA	9	Unmodified	_LVGGREPAA_					0	0	0			REV__nc|ENSG00000101213|Q13882-2|PTK6	REV__nc|ENSG00000101213|Q13882-2|PTK6	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	869.483942	868.476666	0.5335	0.00046387	1.8427	0.0016022	2.3762	0.002066	869.4855579598178	39.683	0.20767	39.683	39.605	39.813	0	0.039168	0.00075754	NaN	26.884	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4708200	+		20733	17095	13169	13226							0.03716631583222352
LVGGSSRKPT	10	Unmodified	_LVGGSSRKPT_					0	0	0		ENST00000434221.5_1_22:28389243-28389507:+|nuORF	ENST00000434221.5_1_22:28389243-28389507:+|nuORF	ENST00000434221.5_1_22:28389243-28389507:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	501.29083251953125	2	501.290548	1000.56654	0.47405	0.00023763	0.0045204	2.2661E-06	0.47857	0.0002399	501.2905130309798	46.785	1.8891	46.471	45.94	47.829	-0.31405					48	37	2	0	0	0	0.87801	1	17722	17722		3.9444	1.3669	1	7005800			20734	7874	13170	13227	19909	19909					0.06628261191792717
LVGGWNEGEK	10	Unmodified	_LVGGWNEGEK_					0	0	0		ENSG00000124743|ENST00000370905|KLHL31	ENSG00000124743|ENST00000370905|KLHL31	ENSG00000124743|ENST00000370905|KLHL31	MULTI-SECPEP	HCT116MG_D190212_S4	4	544.74267578125	2	544.772188	1087.52982	0.4841	0.00026372	-0.28039	-0.00015275	0.2037	0.00011097	544.7721064508107	29.323	1.091	28.974	28.41	29.501	-0.34921					32	20	3	0	0	0	0.28233	1	10573	10573		21.537	15.805	1	5480100			20735	2860	13171	13228	19910	19910					-0.010440354247748473
LVGKKAAA	8	Unmodified	_LVGKKAAA_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF;ENST00000422486.1_1_3:185135285-185135612:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MSMS	HCT116MG_D190212_S3	3	379.2489318847656	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.708	1	47.393	46.893	47.893	-0.31525								0	0	0	0.8837	1	17923	17923		2.8892	0	1				20736	5331	13172	13229	19911	19911					0.09779024939552983
LVGKLLLLLD	10	Unmodified	_LVGKLLLLLD_					0	0	0		ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	ENST00000331889.10_1_3:32726697-32726778:+|nuORF	MSMS	HCT116MG_D190212_S1	1	366.2486877441406	3	366.249521	1095.72673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.964	1	59.964	59.464	60.464	0								0	0	0	0.97054	1	23108	23108		0.13989	0	1				20737	7164	13173	13230	19912	19912					0.18269796136132754
LVGLLIALK	9	Unmodified	_LVGLLIALK_					0	0	0			REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1	REV__tr|U7SR50|U7SR50_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01634PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	470.3323669433594	2	470.333696	938.652839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.385	1	61.125	60.625	61.625	-0.2602								0	0	0	0.77025	1	23156	23156		0	0	1		+		20738	17760	13174	13231	19913	19913					0.18105872764442665
LVGRTYKEI	9	Unmodified	_LVGRTYKEI_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	HCT116MG_D190212_S2	2	540.3195190429688	2	539.816399	1077.61824	0.46943	0.0002534	0.47374	0.00025573	0.94317	0.00050914	539.8161588354411	54.979	0.4582	54.791	54.662	55.121	-0.18797					11	8	2	0	0	0	0.59439	1	21233	21233		16.942	1.0951	1	48091000	+		20739	12164	13175	13232	19914	19914					0.0825400488570267
LVHFRPPERR	10	Unmodified	_LVHFRPPERR_					0	0	0			REV__ENST00000359451.6_1_6:110481915-110500819:-|nuORF	REV__ENST00000359451.6_1_6:110481915-110500819:-|nuORF	MSMS	HCT116MG_D190212_S2	2	654.2410278320312	2	653.878188	1305.74182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.483	1	37.379	36.879	37.879	-0.10318								0	0	0	0.94149	1	14051	14051		7.2892	1.0834	1		+		20740	15075	13176	13233	19915	19915					0.10118100776662686
LVIMKKLILRT	11	Unmodified	_LVIMKKLILRT_					0	0	0		ENST00000316660.6_1_18:57570382-57570517:+|nuORF	ENST00000316660.6_1_18:57570382-57570517:+|nuORF	ENST00000316660.6_1_18:57570382-57570517:+|nuORF	MSMS	HCT116MG_D190212_S1	1	443.233154296875	3	443.300109	1326.8785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.086	1	59.086	58.586	59.586	0								0	0	0	0.9619	1	22776	22776		0.094841	0	1				20741	7084	13177	13234	19916	19916					0.22813453892194957
LVIRSRGP	8	Unmodified	_LVIRSRGP_					0	0	0			REV__ENSG00000104059|ENST00000261275|ENTREP2	REV__ENSG00000104059|ENST00000261275|ENTREP2	MSMS	HCT116MG_D190212_S4	4	449.2848205566406	2	449.285069	896.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.39	1	32.011	31.511	32.511	-0.37924								0	0	0	0.8837	1	11795	11795		13.508	0	1		+		20742	11206	13178	13235	19917	19917					0.10316903608190842
LVITAARRIKY	11	Unmodified	_LVITAARRIKY_					0	0	0			REV__MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant	REV__MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	652.1419677734375	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.866	1	41.564	41.064	42.064	-0.30257								0	0	0	0.95581	1	15578	15578		3.2813	0.28607	1		+		20743	14077	13179	13236	19918	19918					0.17429595410567345
LVKFCKPL	8	Unmodified	_LVKFCKPL_					0	0	0		BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	474.2912902832031	2	474.290974	946.567395	0.38617	0.00018315	-0.36682	-0.00017398	0.019345	9.1752E-06	474.29073460037887	42.696	1.0037	42.322	41.632	42.636	-0.37493					27	19	2	0	0	0	0.87576	1	15631	15631		0.79363	0	1	3305400			20744	256	13180	13237	19919	19919					0.09197384307140055
LVKFCKPL	8	Unmodified	_LVKFCKPL_					0	0	0		BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant;ENSG00000179941|ENST00000650064|BBS10	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	BBS10|p.K620Nfs*12|1|0.5|ENSG00000179941|chr12:76346125-76346125|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	474.290974	946.567395	0.081733	3.8765E-05	-0.0063691	-3.0208E-06	0.075364	3.5745E-05	474.29087699467726	42.322	1.0386	42.322	41.55	42.588	0	0.00041925	0.00013849	NaN	0.79363	28	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22066000			20745	256	13180	13237							0.09197384307140055
LVKIFLKKR	9	Unmodified	_LVKIFLKKR_					0	0	0		ENST00000437852.2_1_9:116613102-116613318:-|nuORF	ENST00000437852.2_1_9:116613102-116613318:-|nuORF	ENST00000437852.2_1_9:116613102-116613318:-|nuORF	MSMS	HCT116MG_D190212_S4	4	382.2698669433594	3	382.269138	1143.78558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.109	1	25.819	25.319	26.319	-0.29022								0	0	0	0.77019	1	9285	9285		0.23584	0	1				20746	7891	13181	13238	19920	19920					0.2194431722111858
LVKKLLITAI	10	Unmodified	_LVKKLLITAI_					0	0	0			REV__AKAP3|p.T459Pfs*14|1|0.05|ENSG00000111254|chr12:4627531-4627531|C/-|frameshift_variant	REV__AKAP3|p.T459Pfs*14|1|0.05|ENSG00000111254|chr12:4627531-4627531|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	371.2649841308594	3	371.265282	1110.77402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.753	1	18.753	18.253	19.253	0								0	0	0	0.96769	1	6464	6464		0.77653	0	1		+		20747	9904	13182	13239	19921	19921					0.22306075407118442
LVKPKRKFF	9	Unmodified	_LVKPKRKFF_					0	0	0			REV__nc|ENSG00000214787|Q96PG1-2|MS4A4E	REV__nc|ENSG00000214787|Q96PG1-2|MS4A4E	MSMS	HCT116MG_D190212_S3	3	388.25408935546875	3	388.253488	1161.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.243	1	28.037	27.537	28.537	-0.20593								0	0	0	0.77018	1	10213	10213		0.26902	0	1		+		20748	14269	13183	13240	19922	19922					0.16423457669975505
LVKPKRKFF	9	Unmodified	_LVKPKRKFF_					0	0	0			REV__nc|ENSG00000214787|Q96PG1-2|MS4A4E	REV__nc|ENSG00000214787|Q96PG1-2|MS4A4E	MSMS	HCT116MG_D190212_S4	4	388.2539367675781	3	388.253488	1161.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.523	1	54.2	53.7	54.7	-0.32349								0	0	0	0.77019	1	20389	20389		0.23584	0	1		+		20749	14269	13183	13240	19923	19923					0.16423457669975505
LVKPRPIPAT	10	Unmodified	_LVKPRPIPAT_					0	0	0			REV__BMPR1B|p.T24I|1|0.16|ENSG00000138696|chr4:95104495-95104495|C/T|missense_variant	REV__BMPR1B|p.T24I|1|0.16|ENSG00000138696|chr4:95104495-95104495|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	546.349365234375	2	546.350409	1090.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.083	1	37.99	37.49	38.49	-0.09301								0	0	0	0.93854	1	14296	14296		7.2892	0	1		+		20750	10045	13184	13241	19924	19924					0.14454874536363604
LVKRDVRTPFA	11	Unmodified	_LVKRDVRTPFA_					0	0	0		ENSG00000205669|ENST00000645972|ACOT6	ENSG00000205669|ENST00000645972|ACOT6	ENSG00000205669|ENST00000645972|ACOT6	MSMS	HCT116MG_D190212_S1	1	651.3911743164062	2	651.388054	1300.76155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.961	1	42.961	42.461	43.461	0								0	0	0	0.95925	1	16218	16218		1.4819	0	1				20751	6388	13185	13242	19925	19925					0.12320431996795378
LVKRILIQKQP	11	Unmodified	_LVKRILIQKQP_					0	0	0			REV__IQCA1|p.R69Q|1|0.55|ENSG00000132321|chr2:236497293-236497293|C/T|missense_variant	REV__IQCA1|p.R69Q|1|0.55|ENSG00000132321|chr2:236497293-236497293|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	668.4471435546875	2	668.445372	1334.87619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.492	1	32.492	31.992	32.992	0								0	0	0	0.95954	1	11992	11992		1.3295	0.13619	1		+		20752	16904	13186	13243	19926	19926					0.22214741478728683
LVKTDEVL	8	Unmodified	_LVKTDEVL_					0	0	0			REV__nc|ENSG00000137076|Q9Y490-2|TLN1	REV__nc|ENSG00000137076|Q9Y490-2|TLN1	MSMS	HCT116MG_D190212_S4	4	458.7708740234375	2	458.771126	915.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.874	1	45.502	45.002	46.002	-0.37206								0	0	0	0.8837	1	16938	16938		13.508	0	1		+		20753	12161	13187	13244	19927	19927					0.06655535837421667
LVKVKVLRKVT	11	Unmodified	_LVKVKVLRKVT_					0	0	0			REV__ARID4A|p.D423Rfs*24|1|0.27|ENSG00000032219|chr14:58347732-58347733|-/A|frameshift_variant	REV__ARID4A|p.D423Rfs*24|1|0.27|ENSG00000032219|chr14:58347732-58347733|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	428.30364990234375	3	428.302619	1281.88603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.555	1	63.555	63.055	64.055	0								0	0	0	0.96157	1	24552	24552		0.073264	0.073264	1		+		20754	9985	13188	13245	19928	19928					0.2563592948411042
LVLALRPWR	9	Unmodified	_LVLALRPWR_					0	0	0		ENST00000528802.1_1_11:64882996-64883265:+|nuORF	ENST00000528802.1_1_11:64882996-64883265:+|nuORF	ENST00000528802.1_1_11:64882996-64883265:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	562.3601684570312	2	562.358568	1122.70258	0.51933	0.00029205	2.8082	0.0015792	3.3276	0.0018713	562.3600701360416	56.424	0.47386	56.242	56.104	56.578	-0.18261					13	8	2	0	0	0	0.63193	1	21790	21790		9.3474	0	1	109720000			20755	8606	13189	13246	19929	19929					0.14614000493133972
LVLEGLLSA	9	Unmodified	_LVLEGLLSA_					0	0	0		PHYHD1|p.F23L|1|0.06|ENSG00000175287|chr9:128927073-128927073|C/A|missense_variant	PHYHD1|p.F23L|1|0.06|ENSG00000175287|chr9:128927073-128927073|C/A|missense_variant	PHYHD1|p.F23L|1|0.06|ENSG00000175287|chr9:128927073-128927073|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	914.557861328125	1	914.55571	913.548434	0.97143	0.00088842	-0.18587	-0.00016999	0.78556	0.00071844	914.555762440014	54.46	0.15207	54.46	54.333	54.485	0					4	2	2	0	0	0	0.13706	1	20890	20890		50.855	0	1	44798000			20756	9748	13190	13247	19930	19930					0.08820126217096913
LVLIIVLIKLL	11	Unmodified	_LVLIIVLIKLL_					0	0	0			REV__ENSG00000167080|ENST00000393354|B4GALNT2	REV__ENSG00000167080|ENST00000393354|B4GALNT2	MSMS	HCT116MG_D190212_S2	2	625.3619384765625	2	625.46471	1248.91487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.766	1	29.465	28.965	29.965	-0.30095								0	0	0	0.96208	1	10917	10917		0	0	1		+		20757	13135	13191	13248	19931	19931					0.3003665406054097
LVLIPRIRDLS	11	Unmodified	_LVLIPRIRDLS_					0	0	0			REV__ENST00000575002.5_1_16:4517092-4524613:-|nuORF	REV__ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MSMS	HCT116MG_D190212_S2	2	432.2798156738281	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.327	1	44.243	43.743	44.743	-0.084038								0	0	0	0.95665	1	16831	16831		2.8433	0	1		+		20758	16596	13192	13249	19932	19932					0.1781017569069263
LVLIPRIRDLS	11	Unmodified	_LVLIPRIRDLS_					0	0	0			REV__ENST00000575002.5_1_16:4517092-4524613:-|nuORF	REV__ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MSMS	HCT116MG_D190212_S3	3	432.28021240234375	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.56	1	44.253	43.753	44.753	-0.30759								0	0	0	0.95665	1	16662	16662		2.8433	0	1		+		20759	16596	13192	13249	19933	19933					0.1781017569069263
LVLKDQKDIAL	11	Unmodified	_LVLKDQKDIAL_					0	0	0		nc|ENSG00000091409|P23229-7|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6	nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-7|ITGA6	MULTI-MSMS	HCT116MG_D190212_S1	1	419.59368896484375	3	419.258856	1254.75474	-0.084823	-3.5563E-05	0.92439	0.00038756	0.83957	0.000352	419.2591321184772	44.802	0.25949	44.802	44.621	44.88	0					12	4	4	0	0	0	0.65047	1	16947	16947		19.144	1.2808	1	71741000			20760	1559	13193	13250	19934	19934					0.1375507432555878
LVLLGKKKKK	10	Unmodified	_LVLLGKKKKK_					0	0	0		ENST00000464515.1_1_7:41729250-41730808:-|nuORF;ENSG00000122641|ENST00000242208|INHBA	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	MSMS	HCT116MG_D190212_S4	4	577.935302734375	2	577.921001	1153.82745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.839	1	53.51	53.01	54.01	-0.32923								0	0	0	0.96377	1	20113	20113		1.6526	0	1				20761	2773	13194	13251	19935	19935					0.2566887290961404
LVLLGLVLTN	10	Unmodified	_LVLLGLVLTN_					0	0	0			REV__sp|F5HHQ0|GN_HCMVMEnvelopeglycoproteinNOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gNPE=3SV=1	REV__sp|F5HHQ0|GN_HCMVMEnvelopeglycoproteinNOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gNPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	352.23260498046875	3	352.23387	1053.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.807	1	61.553	61.053	62.053	-0.25457								0	0	0	0.96836	1	23327	23327		0.62683	0	1		+		20762	17564	13195	13252	19936	19936					0.15508936584978983
LVLLGRRY	8	Unmodified	_LVLLGRRY_					0	0	0		ENSG00000198832|ENST00000400299|SELENOM;ENST00000469262.1_1_22:31501139-31501933:-|nuORF	ENSG00000198832|ENST00000400299|SELENOM	ENSG00000198832|ENST00000400299|SELENOM	MSMS	HCT116MG_D190212_S2	2	495.3165283203125	2	495.316369	988.618185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.683	1	60.534	60.034	61.034	-0.14852								0	0	0	0.8837	1	23491	23491		0	0	1				20763	6279	13196	13253	19937	19937					0.12342049676362876
LVLLRKNISSI	11	Unmodified	_LVLLRKNISSI_					0	0	0			REV__ENST00000555208.1_1_14:77796520-77797535:+|nuORF	REV__ENST00000555208.1_1_14:77796520-77797535:+|nuORF	MSMS	HCT116MG_D190212_S1	1	419.2743225097656	3	419.274729	1254.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.225	1	58.225	57.725	58.725	0								0	0	0	0.95705	1	22423	22423		2.6312	1.3016	1		+		20764	11094	13197	13254	19938	19938					0.18514773316405808
LVLLRLHRL	9	Unmodified	_LVLLRLHRL_					0	0	0			REV__LRRC43|p.I561Sfs*10|2|0.27|ENSG00000158113|chr12:122200799-122200799|C/-|frameshift_variant	REV__LRRC43|p.I561Sfs*10|2|0.27|ENSG00000158113|chr12:122200799-122200799|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	378.2599792480469	3	378.260754	1131.76043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.695	1	26.695	26.195	27.195	0								0	0	0	0.77018	1	9656	9656		0.26902	0	1		+		20765	12771	13198	13255	19939	19939					0.19982262418534447
LVLRIRIMN	9	Unmodified	_LVLRIRIMN_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;ENST00000573603.1_1_17:7412268-7412987:+|nuORF	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MSMS	HCT116MG_D190212_S1	1	564.3593139648438	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.132	1	52.132	51.632	52.632	0								0	0	0	0.768	1	19932	19932		7.9102	0	1				20766	5627	13199	13256	19940	19940					0.14258623412865745
LVLRLVLRFHK	11	Unmodified	_LVLRLVLRFHK_					0	0	0			REV__RBPJL|p.N204Tfs*86|1|0.58|ENSG00000124232|chr20:45312383-45312383|A/-|frameshift_variant	REV__RBPJL|p.N204Tfs*86|1|0.58|ENSG00000124232|chr20:45312383-45312383|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	697.4620361328125	2	697.461356	1392.90816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.429	1	10.157	9.6568	10.657	-0.27211								0	0	0	0.96149	1	3298	3298		0.30703	0	1		+		20767	11783	13200	13257	19941	19941					0.22742153952549415
LVLVLRLSASL	11	Unmodified	_LVLVLRLSASL_					0	0	0		ENST00000540557.1_1_9:38016114-38068223:-|nuORF	ENST00000540557.1_1_9:38016114-38068223:-|nuORF	ENST00000540557.1_1_9:38016114-38068223:-|nuORF	MSMS	HCT116MG_D190212_S3	3	395.2652282714844	3	395.263941	1182.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.812	1	32.527	32.027	33.027	-0.28511								0	0	0	0.95581	1	12040	12040		1.3296	0.55311	1				20768	8689	13201	13258	19942	19942					0.18591985913417375
LVNAIINSGP	10	Unmodified	_LVNAIINSGP_					0	0	0		ENST00000414617.1_1_21:34853889-34854420:-|nuORF;ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000449334.2_1_1:212997682-212997763:+|nuORF	ENST00000414617.1_1_21:34853889-34854420:-|nuORF	ENST00000414617.1_1_21:34853889-34854420:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	499.2874450683594	2	499.287474	996.560395	0.40405	0.00020173	0.068113	3.4008E-05	0.47216	0.00023574	499.2873910713696	19.612	0.36455	19.672	19.438	19.802	0.05983					12	6	3	0	0	0	0.58749	1	6761	6761		29.082	4.0906	1	5026400			20769	1438	13202	13259	19943	19943					0.06197742960296182
LVNAIINSGP	10	Unmodified	_LVNAIINSGP_					0	0	0		ENST00000414617.1_1_21:34853889-34854420:-|nuORF;ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENSG00000083845|ENST00000196551|RPS5;ENST00000449334.2_1_1:212997682-212997763:+|nuORF	ENST00000414617.1_1_21:34853889-34854420:-|nuORF	ENST00000414617.1_1_21:34853889-34854420:-|nuORF	MSMS	HCT116MG_D190212_S4	4	499.287353515625	2	499.287474	996.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.914	1	19.72	19.22	20.22	-0.19367								0	0	0	0.72975	1	6784	6784		36.127	6.2864	1				20770	1438	13202	13259	19944	19944					0.06197742960296182
LVNEVTEFAK	10	Unmodified	_LVNEVTEFAK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	575.31103515625	2	575.311146	1148.60774	-0.011891	-6.8411E-06	0.22334	0.00012849	0.21145	0.00012165	575.3110677439462	38.768	0.41471	38.768	38.644	39.059	0					13	7	3	0	0	0	0.017942	1	14533	14533		125.04	69.535	1	41120000		+	20771	554	13203	13260	19945	19945					0.03937977440614304
LVNEVTEFAK	10	Unmodified	_LVNEVTEFAK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	575.3108520507812	2	575.311146	1148.60774	0.41312	0.00023767	-0.041543	-2.39E-05	0.37158	0.00021377	575.3110868821464	39.043	0.63045	38.742	38.456	39.087	-0.30137					23	11	3	0	0	0	0.013156	1	14467	14467		136.39	76.318	1	32856000		+	20772	554	13203	13260	19946	19946					0.03937977440614304
LVNEVTEFAK	10	Unmodified	_LVNEVTEFAK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	575.813232421875	2	575.311146	1148.60774	0.42722	0.00024579	-0.28241	-0.00016247	0.14482	8.3316E-05	575.310999763524	39.101	0.5304	38.72	38.441	38.971	-0.38055					26	11	4	0	0	0	0.027339	1	14344	14344		107.1	59.351	1	22580000		+	20773	554	13203	13260	19947	19947					0.03937977440614304
LVNGMLSRALK	11	Unmodified	_LVNGMLSRALK_					0	0	0		HHLA1|p.P343Tfs*33|2|0.22|ENSG00000132297|chr8:132077870-132077871|-/T|frameshift_variant;ENSG00000132297|ENST00000414222|HHLA1	HHLA1|p.P343Tfs*33|2|0.22|ENSG00000132297|chr8:132077870-132077871|-/T|frameshift_variant	HHLA1|p.P343Tfs*33|2|0.22|ENSG00000132297|chr8:132077870-132077871|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	601.5250854492188	2	601.357908	1200.70126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.934	1	34.776	34.276	35.276	-0.15834								0	0	0	0.93717	1	13014	13014		13.042	2.2185	1				20774	3176	13204	13261	19948	19948					0.1089399834206688
LVNKKVKKII	10	Unmodified	_LVNKKVKKII_					0	0	0		tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1	tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1	tr|U7STX9|U7STX9_FUSNUProbablenicotinate-nucleotideadenylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nadDPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	591.6277465820312	2	591.918458	1181.82236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.772	1	48.629	48.129	49.129	-0.1437								0	0	0	0.95648	1	18644	18644		3.2813	0.54611	1				20775	18457	13205	13262	19949	19949					0.2387256904703463
LVNNLKKGT	9	Unmodified	_LVNNLKKGT_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MSMS	HCT116MG_D190212_S2	2	493.8032531738281	2	493.803291	985.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.061	1	33.886	33.386	34.386	-0.17512								0	0	0	0.59795	1	12660	12660		24.021	1.2843	1				20776	2106	13206	13263	19950	19950					0.09865735714231505
LVNPQHVF	8	Unmodified	_LVNPQHVF_					0	0	0		SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant;SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant;SZT2|p.A1115Lfs*4|1|0.26|ENSG00000198198|chr1:43427358-43427358|G/-|frameshift_variant;ENST00000470139.1_2_1:43891781-43893406:+|nuORF	SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	477.26495361328125	2	477.263802	952.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.18	1	52.876	52.376	53.376	-0.30305								0	0	0	0.8837	1	20121	20121		5.7604	0.52976	1				20777	6212	13207	13264	19951	19951					0.0348950847994729
LVNSMKKK	8	Unmodified	_LVNSMKKK_					0	0	0			REV__SNW1|p.A85V|1|0.25|ENSG00000100603|chr14:77751395-77751395|G/A|missense_variant	REV__SNW1|p.A85V|1|0.25|ENSG00000100603|chr14:77751395-77751395|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	474.2911071777344	2	474.288963	946.563372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.394	1	43.394	42.894	43.894	0								0	0	0	0.8837	1	16393	16393		5.2307	0.90143	1		+		20778	17538	13208	13265	19952	19952					0.08795294813444343
LVPKGKKILL	10	Unmodified	_LVPKGKKILL_					0	0	0		ALG2|p.F226I|1|0.3|ENSG00000119523|chr9:99218509-99218509|A/T|missense_variant	ALG2|p.F226I|1|0.3|ENSG00000119523|chr9:99218509-99218509|A/T|missense_variant	ALG2|p.F226I|1|0.3|ENSG00000119523|chr9:99218509-99218509|A/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	554.89404296875	2	554.894452	1107.77435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.55	1	37.447	36.947	37.947	-0.10318								0	0	0	0.95179	1	14079	14079		4.3292	0	1				20779	96	13209	13266	19953	19953					0.2247749512698647
LVPLLLEAFI	10	Unmodified	_LVPLLLEAFI_					0	0	0		ENST00000430640.1_1_9:16476096-16476201:+|nuORF	ENST00000430640.1_1_9:16476096-16476201:+|nuORF	ENST00000430640.1_1_9:16476096-16476201:+|nuORF	MSMS	HCT116MG_D190212_S1	1	564.3585815429688	2	564.357368	1126.70018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.781	1	50.781	50.281	51.281	0								0	0	0	0.93576	1	19385	19385		7.9102	0.62092	1				20780	7850	13210	13267	19954	19954					0.14190107244780847
LVPLLLQQLP	10	Unmodified	_LVPLLLQQLP_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MSMS	HCT116MG_D190212_S4	4	567.3705444335938	2	567.368267	1132.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.743	1	43.369	42.869	43.869	-0.37433								0	0	0	0.95179	1	16090	16090		4.3292	0	1		+		20781	10858	13211	13268	19955	19955					0.16092911993382586
LVPPASGPPP	10	Unmodified	_LVPPASGPPP_					0	0	0		ENST00000310441.11_1_X:153236792-153236924:-|nuORF	ENST00000310441.11_1_X:153236792-153236924:-|nuORF	ENST00000310441.11_1_X:153236792-153236924:-|nuORF	MSMS	HCT116MG_D190212_S3	3	466.2309875488281	2	466.26601	930.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.073	1	29.826	29.326	30.326	-0.24667								0	0	0	0.92272	1	10947	10947		10.824	2.2306	1				20782	7053	13212	13269	19956	19956					0.049429729028588554
LVPVEIFFPFP	11	Unmodified	_LVPVEIFFPFP_					0	0	0			REV__ENST00000332582.4_1_X:53108273-53108501:+|nuORF	REV__ENST00000332582.4_1_X:53108273-53108501:+|nuORF	MSMS	HCT116MG_D190212_S2	2	652.8696899414062	2	652.8681	1303.72165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.487	1	37.384	36.884	37.884	-0.10318								0	0	0	0.94924	1	14053	14053		6.7232	0.51738	1		+		20783	14936	13213	13270	19957	19957					0.08193492273494485
LVQFRALV	8	Unmodified	_LVQFRALV_					0	0	0			REV__ENST00000571735.2_1_19:582536-582838:+|nuORF	REV__ENST00000571735.2_1_19:582536-582838:+|nuORF	MSMS	HCT116MG_D190212_S4	4	473.2972717285156	2	473.297645	944.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.329	1	42.955	42.455	43.455	-0.37433								0	0	0	0.8837	1	15925	15925		11.114	0	1		+		20784	16578	13214	13271	19958	19958					0.10622958410749561
LVQGPGAP	8	Unmodified	_LVQGPGAP_					0	0	0		ENST00000234610.5_1_1:1631484-1633139:+|nuORF	ENST00000234610.5_1_1:1631484-1633139:+|nuORF	ENST00000234610.5_1_1:1631484-1633139:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	369.7107849121094	2	369.710871	737.407189	-0.10755	-3.9763E-05	-0.35043	-0.00012956	-0.45798	-0.00016932	369.710787890544	22.559	0.26081	22.559	22.376	22.637	0					6	4	2	0	0	0	0.71835	1	8019	8019		20.871	0	1	6419100			20785	6775	13215	13272	19959	19959					0.02798172634470575
LVQRHQQQFKW	11	Unmodified	_LVQRHQQQFKW_					0	0	0			REV__ENSG00000173611|ENST00000336505|SCAI	REV__ENSG00000173611|ENST00000336505|SCAI	MSMS	HCT116MG_D190212_S4	4	499.94140625	3	499.940632	1496.80007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.226	1	46.856	46.356	47.356	-0.37038								0	0	0	0.96111	1	17462	17462		0.50596	0.051438	1		+		20786	13446	13216	13273	19960	19960					0.07153737631301738
LVRGGHWFPGL	11	Unmodified	_LVRGGHWFPGL_					0	0	0			REV__FAM178B|p.A733Gfs*2|1|0.12|ENSG00000168754|chr2:96893950-96893951|-/T|frameshift_variant	REV__FAM178B|p.A733Gfs*2|1|0.12|ENSG00000168754|chr2:96893950-96893951|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	413.5644226074219	3	413.564614	1237.67201	-0.49485	-0.00020465	0.039653	1.6399E-05	-0.4552	-0.00018825	413.56465669444617	15.356	0.18172	15.194	15.124	15.305	-0.16173					5	3	2	0	0	0	0.7388	1	4968	4968		7.4771	7.4771	1	893670	+		20787	13210	13217	13274	19961	19961					0.06268222108064947
LVRGREHLQG	10	Unmodified	_LVRGREHLQG_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	HCT116MG_D190212_S1	1	582.5029907226562	2	582.833446	1163.65234	0.41381	0.00024118	-0.76006	-0.00044299	-0.34625	-0.00020181	582.8327736500133	49.905	1.1337	49.905	49.44	50.574	0					40	21	2	0	0	0	0.86339	1	19030	19030		6.7232	2.7788	1	21936000			20788	5626	13218	13275	19962	19962					0.07705846097314861
LVRKDKMKY	9	Unmodified	_LVRKDKMKY_					0	0	0			REV__ETNPPL|p.E394D|1|0.24|ENSG00000164089|chr4:108746520-108746520|T/A|missense_variant	REV__ETNPPL|p.E394D|1|0.24|ENSG00000164089|chr4:108746520-108746520|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	394.2334899902344	3	394.233876	1179.6798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.525	1	32.525	32.025	33.025	0								0	0	0	0.76877	1	12005	12005		2.9952	0	1		+		20789	16798	13219	13276	19963	19963					0.09714613313349219
LVRKDKMKY	9	Unmodified	_LVRKDKMKY_					0	0	0			REV__ETNPPL|p.E394D|1|0.24|ENSG00000164089|chr4:108746520-108746520|T/A|missense_variant	REV__ETNPPL|p.E394D|1|0.24|ENSG00000164089|chr4:108746520-108746520|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	394.23345947265625	3	394.233876	1179.6798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.893	1	32.608	32.108	33.108	-0.28511								0	0	0	0.76877	1	12072	12072		2.9952	0	1		+		20790	16798	13219	13276	19964	19964					0.09714613313349219
LVRKGHLA	8	Unmodified	_LVRKGHLA_					0	0	0			REV__PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	REV__PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	447.34759521484375	2	447.287611	892.56067	-0.023664	-1.0585E-05	0.19014	8.5047E-05	0.16648	7.4463E-05	447.28753347903887	61.019	0.46349	61.019	60.85	61.314	0					18	8	3	0	0	0	0.33364	1	23492	23492		0.79363	0.79363	1	13695000	+		20791	17426	13220	13277	19965	19965					0.1100920747079499
LVRLALLQHLR	11	Unmodified	_LVRLALLQHLR_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;ARHGAP11A|p.R126*|1|0.1|ENSG00000198826|chr15:32624244-32624245|-/T|frameshift_variant;ARHGAP11A|p.F125Lfs*18|1|0.19|ENSG00000198826|chr15:32624245-32624245|T/-|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	666.4342041015625	2	666.435338	1330.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.417	1	59.158	58.658	59.658	-0.25832								0	0	0	0.9598	1	22626	22626		1.1933	0	1				20792	171	13221	13278	19966	19966					0.2039299053878949
LVRLALLQHLR	11	Unmodified	_LVRLALLQHLR_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;ARHGAP11A|p.R126*|1|0.1|ENSG00000198826|chr15:32624244-32624245|-/T|frameshift_variant;ARHGAP11A|p.F125Lfs*18|1|0.19|ENSG00000198826|chr15:32624245-32624245|T/-|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	666.4346313476562	2	666.435338	1330.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.131	1	59.879	59.379	60.379	-0.25233								0	0	0	0.9598	1	22917	22917		1.1933	0	1				20793	171	13221	13278	19967	19967					0.2039299053878949
LVRLALLQHLR	11	Unmodified	_LVRLALLQHLR_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;ARHGAP11A|p.R126*|1|0.1|ENSG00000198826|chr15:32624244-32624245|-/T|frameshift_variant;ARHGAP11A|p.F125Lfs*18|1|0.19|ENSG00000198826|chr15:32624245-32624245|T/-|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	666.4354858398438	2	666.435338	1330.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.486	1	59.209	58.709	59.709	-0.27731								0	0	0	0.9598	1	22386	22386		1.1933	0	1				20794	171	13221	13278	19968	19968					0.2039299053878949
LVRLITKKGV	10	Unmodified	_LVRLITKKGV_					0	0	0			REV__ENST00000554581.5_1_14:105236164-105236665:-|nuORF	REV__ENST00000554581.5_1_14:105236164-105236665:-|nuORF	MSMS	HCT116MG_D190212_S4	4	376.25921630859375	3	376.260531	1125.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.654	1	61.399	60.899	61.899	-0.25457								0	0	0	0.97045	1	23265	23265		0.15932	0	1		+		20795	16450	13222	13279	19969	19969					0.20191422978814444
LVRLLLVLVP	10	Unmodified	_LVRLLLVLVP_					0	0	0			REV__ENST00000378944.9_1_19:36276198-36277438:+|nuORF	REV__ENST00000378944.9_1_19:36276198-36277438:+|nuORF	MSMS	HCT116MG_D190212_S1	1	568.1010131835938	2	567.902277	1133.79	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.63	1	32.63	32.13	33.13	0								0	0	0	0.96911	1	12047	12047		0.45834	0.45834	1		+		20796	15253	13223	13280	19970	19970					0.22845781643991359
LVRPEVDVM	9	Unmodified	_LVRPEVDVM_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2896728515625	2	529.289159	1056.56377	0.58027	0.00030713	-0.26733	-0.0001415	0.31294	0.00016563	529.2891908295157	40.699	0.31276	40.397	40.215	40.528	-0.30161					6	5	2	0	0	0	0.30874	1	15147	15147		29.841	13.993	1	3925300		+	20797	554	13224	13281	19971	19971					0.037746697426428
LVRPKRRRRAR	11	Unmodified	_LVRPKRRRRAR_					0	0	0			REV__ENSG00000183072|ENST00000329198|NKX2-5	REV__ENSG00000183072|ENST00000329198|NKX2-5	MSMS	HCT116MG_D190212_S3	3	732.4822998046875	2	732.484551	1462.95455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.489	1	60.237	59.737	60.737	-0.25233								0	0	0	0.96157	1	23063	23063		0.26902	0.26902	1		+		20798	13741	13225	13282	19972	19972					0.24159031627186778
LVRPKRRRRAR	11	Unmodified	_LVRPKRRRRAR_					0	0	0			REV__ENSG00000183072|ENST00000329198|NKX2-5	REV__ENSG00000183072|ENST00000329198|NKX2-5	MSMS	HCT116MG_D190212_S3	3	732.4827270507812	2	732.484551	1462.95455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.16	1	60.914	60.414	61.414	-0.24588								0	0	0	0.96149	1	23336	23336		0.30703	0.30703	1		+		20799	13741	13225	13282	19973	19973					0.24159031627186778
LVRQKNYY	8	Unmodified	_LVRQKNYY_					0	0	0			REV__ENSG00000162975|ENST00000295082|KCNF1	REV__ENSG00000162975|ENST00000295082|KCNF1	MSMS	HCT116MG_D190212_S1	1	542.4684448242188	2	542.300916	1082.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.267	1	24.267	23.767	24.767	0								0	0	0	0.8837	1	8680	8680		13.508	2.684	1		+		20800	12903	13226	13283	19974	19974					0.04928851571457926
LVRRMQTQVR	10	Unmodified	_LVRRMQTQVR_					0	0	0			REV__ENST00000367603.7_2_6:143094989-143095052:-|nuORF	REV__ENST00000367603.7_2_6:143094989-143095052:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	429.0892639160156	3	429.587312	1285.74011	-0.0434	-1.8644E-05	-0.19617	-8.4271E-05	-0.23957	-0.00010292	429.58723190791653	47.561	0.19997	47.561	47.395	47.595	0					8	3	3	0	0	0	0.31151	1	18010	18010		1.5923	0	1	12528000	+		20801	15127	13227	13284	19975	19975					0.10866723696403824
LVRRRGVVP	9	Unmodified	_LVRRRGVVP_					0	0	0			REV__ENST00000496700.5_1_14:105954422-105954593:+|nuORF	REV__ENST00000496700.5_1_14:105954422-105954593:+|nuORF	MSMS	HCT116MG_D190212_S3	3	526.3442993164062	2	526.345992	1050.67743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.139	1	47.823	47.323	48.323	-0.31596								0	0	0	0.7676	1	18097	18097		9.3474	6.4582	1		+		20802	16093	13228	13285	19976	19976					0.1541194569056188
LVRRRPENP	9	Unmodified	_LVRRRPENP_					0	0	0		ENST00000488633.1_1_2:96932144-96933062:+|nuORF	ENST00000488633.1_1_2:96932144-96933062:+|nuORF	ENST00000488633.1_1_2:96932144-96933062:+|nuORF	MSMS	HCT116MG_D190212_S4	4	568.8375854492188	2	568.835988	1135.65742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.397	1	43.023	42.523	43.523	-0.37433								0	0	0	0.61599	1	15951	15951		23.148	2.7339	1				20803	8319	13229	13286	19977	19977					0.09502149959939743
LVRSLLRRPA	10	Unmodified	_LVRSLLRRPA_					0	0	0		ENST00000495186.5_1_X:48382242-48385545:+|nuORF	ENST00000495186.5_1_X:48382242-48385545:+|nuORF	ENST00000495186.5_1_X:48382242-48385545:+|nuORF	MSMS	HCT116MG_D190212_S4	4	394.2586975097656	3	394.259413	1179.75641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.35	1	61.09	60.59	61.59	-0.2602								0	0	0	0.96804	1	23142	23142		0.69767	0.19171	1				20804	8378	13230	13287	19978	19978					0.1737217292486548
LVRTRSPQ	8	Unmodified	_LVRTRSPQ_					0	0	0			REV__ADGRF3|p.N176Efs*75|1|0.37|ENSG00000173567|chr2:26316425-26316426|-/C|frameshift_variant	REV__ADGRF3|p.N176Efs*75|1|0.37|ENSG00000173567|chr2:26316425-26316426|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	479.2648010253906	2	478.785433	955.556313	0.018714	8.9599E-06	0.065435	3.133E-05	0.084149	4.0289E-05	478.785330943384	51.211	0.67065	51.211	50.73	51.4	0					20	12	3	0	0	0	0.33109	1	19471	19471		0.6015	0	1	47161000	+		20805	9870	13231	13288	19979	19979					0.0767569825721921
LVSARQLKWG	10	Unmodified	_LVSARQLKWG_					0	0	0			REV__ENST00000378161.5_1_1:5924088-5924661:-|nuORF	REV__ENST00000378161.5_1_1:5924088-5924661:-|nuORF	MSMS	HCT116MG_D190212_S1	1	579.3431396484375	2	579.343115	1156.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.358	1	55.358	54.858	55.858	0								0	0	0	0.94339	1	21256	21256		6.2058	2.6093	1		+		20806	15246	13232	13289	19980	19980					0.09960802388218326
LVSELIYMY	9	Unmodified	_LVSELIYMY_					0	0	0			REV__ENST00000220913.9_1_8:141525461-141525764:+|nuORF	REV__ENST00000220913.9_1_8:141525461-141525764:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	565.2642211914062	2	565.793743	1129.57293	0.46439	0.00026275	0.1204	6.812E-05	0.58478	0.00033087	565.7935102528137	16.968	0.31288	16.968	16.733	17.046	0					8	5	3	0	0	0	0.26676	1	5673	5673		2.0598	0	1	5517300	+		20807	14520	13233	13290	19981	19981					0.013330183083098746
LVSESSDVLPK	11	Unmodified	_LVSESSDVLPK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-SECPEP	HCT116MG_D190212_S1	1	587.7727661132812	2	587.321711	1172.62887	0.77297	0.00045398	0.67232	0.00039487	1.4453	0.00084885	587.322296400169	32.954	0.29476	32.954	32.794	33.089	0					9	5	2	0	0	0	0.31624	1	12208	12208		44.392	17.508	1	4615900		+	20808	558	13234	13291	19982	19982					0.049459427494639385
LVSRRGEP	8	Unmodified	_LVSRRGEP_					0	0	0			REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant	REV__STRC|p.V1549Gfs*8|1|0.04|ENSG00000242866|chr15:43601451-43601452|-/CAGAC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	457.2445068359375	2	457.264333	912.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.83	1	26.83	26.33	27.33	0								0	0	0	0.8837	1	9711	9711		15.768	1.1865	1		+		20809	14360	13235	13292	19983	19983					0.05435722848858404
LVSYLFLLVG	10	Unmodified	_LVSYLFLLVG_					0	0	0			REV__ENSG00000148481|ENST00000277632|MINDY3	REV__ENSG00000148481|ENST00000277632|MINDY3	MSMS	HCT116MG_D190212_S2	2	562.34326171875	2	562.341718	1122.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.594	1	47.461	46.961	47.961	-0.13281								0	0	0	0.94107	1	18159	18159		6.7232	0.51738	1		+		20810	12546	13236	13293	19984	19984					0.11245534210684127
LVTCIIKVY	9	Unmodified	_LVTCIIKVY_					0	0	0			REV__OR6N1|p.Q220K|1|0.23|ENSG00000197403|chr1:158766025-158766025|G/T|missense_variant	REV__OR6N1|p.Q220K|1|0.23|ENSG00000197403|chr1:158766025-158766025|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	526.274658203125	2	526.314646	1050.61474	0.24578	0.00012936	-0.15895	-8.3657E-05	0.086831	4.57E-05	526.3144815846974	44.637	0.89299	44.637	43.936	44.829	0					23	16	2	0	0	0	0.26608	1	16905	16905		0.6015	0	1	12055000	+		20811	17374	13237	13294	19985	19985					0.09145618787488274
LVTFGTEVH	9	Unmodified	_LVTFGTEVH_					0	0	0			REV__ENST00000434453.1_1_7:156616573-156629563:-|nuORF	REV__ENST00000434453.1_1_7:156616573-156629563:-|nuORF	MSMS	HCT116MG_D190212_S1	1	501.76544189453125	2	501.766374	1001.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.81	1	46.81	46.31	47.31	0								0	0	0	0.71969	1	17770	17770		18.135	2.2878	1		+		20812	15606	13238	13295	19986	19986					0.01749767551905279
LVTGWALPVS	10	Unmodified	_LVTGWALPVS_					0	0	0			REV__ENST00000393992.5_2_16:67260649-67260712:-|nuORF	REV__ENST00000393992.5_2_16:67260649-67260712:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	522.2544555664062	2	521.800217	1041.58588	0.36849	0.00019228	2.2207	0.0011588	2.5892	0.001351	522.3028571762728	56.737	0.2069	56.737	56.634	56.841	0					5	3	2	0	0	0	0.86339	1	21827	21827		6.7232	2.7788	1	5621700	+		20813	15334	13239	13296	19987	19987					0.06675217482688822
LVTKTVTMLPP	11	Unmodified	_LVTKTVTMLPP_					0	0	0		ENST00000471578.5_1_1:224734560-224753960:+|nuORF	ENST00000471578.5_1_1:224734560-224753960:+|nuORF	ENST00000471578.5_1_1:224734560-224753960:+|nuORF	MSMS	HCT116MG_D190212_S1	1	600.3574829101562	2	600.357042	1198.69953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.887	1	43.887	43.387	44.387	0								0	0	0	0.95521	1	16593	16593		3.5965	0	1				20814	8159	13240	13297	19988	19988					0.10812944533449809
LVTLHLIV	8	Unmodified	_LVTLHLIV_					0	0	0			REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	454.3025817871094	2	454.302396	906.590239	0.15068	6.8454E-05	0.39944	0.00018147	0.55012	0.00024992	454.30241983713194	46.997	0.25886	46.997	46.855	47.114	0					10	4	3	0	0	0	0.2535	1	17856	17856		63.394	10.701	1	18545000	+		20815	9893	13241	13298	19989	19989					0.13320726696292695
LVTLHLIV	8	Unmodified	_LVTLHLIV_					0	0	0			REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	454.302490234375	2	454.302396	906.590239	0.3518	0.00015982	0.33923	0.00015411	0.69103	0.00031393	454.3024055635744	47.121	0.36127	47	46.82	47.182	-0.12175					14	6	3	0	0	0	0.19251	1	17971	17971		75.128	10.892	1	65030000	+		20816	9893	13241	13298	19990	19990					0.13320726696292695
LVTLHLIV	8	Unmodified	_LVTLHLIV_					0	0	0			REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	454.302396	906.590239	0.15068	6.8454E-05	0.39944	0.00018147	0.55012	0.00024992	454.30241983713194	46.997	0.25886	46.997	46.855	47.114	0	-0.0014209	3.5852E-05	NaN	75.128	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18545000	+		20817	9893	13241	13298							0.13320726696292695
LVTLHLIV	8	Unmodified	_LVTLHLIV_					0	0	0			REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	454.302396	906.590239	0.3518	0.00015982	0.33923	0.00015411	0.69103	0.00031393	454.3024055635744	47.121	0.36127	47	46.82	47.182	-0.12175	0.0014209	-1.8858E-05	NaN	75.128	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65030000	+		20818	9893	13241	13298							0.13320726696292695
LVTLLDDP	8	Unmodified	_LVTLLDDP_					0	0	0		ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5	ENSG00000244405|ENST00000306376|ETV5	ENSG00000244405|ENST00000306376|ETV5	MSMS	HCT116MG_D190212_S4	4	443.2496032714844	2	443.250026	884.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.624	1	22.386	21.886	22.886	-0.23758								0	0	0	0.8837	1	7880	7880		15.768	0	1				20819	6564	13242	13299	19991	19991					0.0386356042904481
LVTRNIKFHQ	10	Unmodified	_LVTRNIKFHQ_					0	0	0			REV__nc|ENSG00000137936|O75815-3|BCAR3	REV__nc|ENSG00000137936|O75815-3|BCAR3	MSMS	HCT116MG_D190212_S3	3	628.14013671875	2	628.367121	1254.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.562	1	47.247	46.747	47.747	-0.31525								0	0	0	0.95507	1	17864	17864		3.5965	0.31518	1		+		20820	12199	13243	13300	19992	19992					0.10251876308279861
LVTRPGHTRP	10	Unmodified	_LVTRPGHTRP_					0	0	0		ENST00000602865.1_1_1:2282646-2283036:-|nuORF	ENST00000602865.1_1_1:2282646-2283036:-|nuORF	ENST00000602865.1_1_1:2282646-2283036:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.3306274414062	2	567.330539	1132.64652	0.40069	0.00022732	-0.7387	-0.00041909	-0.33802	-0.00019177	567.3300875993567	48.395	0.91833	48.028	47.343	48.261	-0.36727					21	19	2	0	0	0	0.88163	1	17845	17845		5.7319	5.7319	1	5905100			20821	9099	13244	13301	19993	19993					0.08550747585650242
LVTSLGVT	8	Unmodified	_LVTSLGVT_					0	0	0			REV__nc|ENSG00000053108|Q6MZW2-3|FSTL4	REV__nc|ENSG00000053108|Q6MZW2-3|FSTL4	MULTI-MSMS	HCT116MG_D190212_S3	3	789.4715576171875	1	789.471646	788.46437	0.82721	0.00065306	-0.14793	-0.00011679	0.67929	0.00053628	789.4711989898015	29.45	0.20849	29.213	29.083	29.292	-0.23655					5	3	2	0	0	0	0.46267	1	10713	10713		44.407	2.3125	1	3388200	+		20822	10627	13245	13302	19994	19994					0.06167595120200531
LVTSLGVT	8	Unmodified	_LVTSLGVT_					0	0	0			REV__nc|ENSG00000053108|Q6MZW2-3|FSTL4	REV__nc|ENSG00000053108|Q6MZW2-3|FSTL4	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	789.471646	788.46437	0.82721	0.00065306	-0.14793	-0.00011679	0.67929	0.00053628	789.4711989898015	29.45	0.20849	29.213	29.083	29.292	-0.23655	-0.026723	-3.7266E-06	NaN	44.407	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3388200	+		20823	10627	13245	13302							0.06167595120200531
LVTSLGVT	8	Unmodified	_LVTSLGVT_					0	0	0			REV__nc|ENSG00000053108|Q6MZW2-3|FSTL4	REV__nc|ENSG00000053108|Q6MZW2-3|FSTL4	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	789.471646	788.46437	0.86375	0.00068191	-0.14073	-0.0001111	0.72302	0.00057081	789.4714009918708	29.616	0.2601	29.267	29.085	29.345	-0.34921	0.026723	1.959E-06	NaN	44.407	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2239100	+		20824	10627	13245	13302							0.06167595120200531
LVTSVSAL	8	Unmodified	_LVTSVSAL_					0	0	0			REV__ENSG00000206172|ENST00000320868|HBA1	REV__ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	HCT116MG_D190212_S3	3	395.2396240234375	2	395.239461	788.46437	0.09602	3.7951E-05	-0.12075	-4.7724E-05	-0.024726	-9.7728E-06	395.2393743305233	29.45	0.36505	29.213	29.031	29.396	-0.23655					9	6	2	0	0	0	0.43493	1	10704	10704		46.921	0	1	9089700	+		20825	13957	13246	13303	19995	19995					0.06167595120200531
LVTTKVYTRI	10	Unmodified	_LVTTKVYTRI_					0	0	0		DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	DHX40|p.A681T|1|0.17|ENSG00000108406|chr17:59605515-59605515|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	597.36474609375	2	597.366256	1192.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.808	1	54.808	54.308	55.308	0								0	0	0	0.93854	1	21029	21029		7.2892	1.5574	1				20826	670	13247	13304	19996	19996					0.12930822499652095
LVTVLQRRRP	10	Unmodified	_LVTVLQRRRP_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MSMS	HCT116MG_D190212_S2	2	413.2660217285156	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.20406	1	0.20012	-0.29988	0.70012	-0.0039395								0	0	0	0.97045	1	80	80		0.15932	0	1				20827	6242	13248	13305	19997	19997					0.1689555795353499
LVTVLQRRRP	10	Unmodified	_LVTVLQRRRP_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MSMS	HCT116MG_D190212_S2	2	413.2658386230469	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1556	1	3.1153	2.6153	3.6153	-0.040353								0	0	0	0.97045	1	1008	1008		0.15932	0	1				20828	6242	13248	13305	19998	19998					0.1689555795353499
LVTVLQRRRP	10	Unmodified	_LVTVLQRRRP_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MSMS	HCT116MG_D190212_S2	2	413.2660217285156	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7784	1	4.6597	4.1597	5.1597	-0.11871								0	0	0	0.97045	1	1511	1511		0.15932	0	1				20829	6242	13248	13305	19999	19999					0.1689555795353499
LVTVLQRRRP	10	Unmodified	_LVTVLQRRRP_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MSMS	HCT116MG_D190212_S2	2	413.265869140625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3505	1	6.1759	5.6759	6.6759	-0.17458								0	0	0	0.97045	1	2003	2003		0.15932	0	1				20830	6242	13248	13305	20000	20000					0.1689555795353499
LVTVLQRRRP	10	Unmodified	_LVTVLQRRRP_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MSMS	HCT116MG_D190212_S4	4	413.26611328125	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9714	1	6.7212	6.2212	7.2212	-0.25015								0	0	0	0.97045	1	2139	2139		0.15932	0	1				20831	6242	13248	13305	20001	20001					0.1689555795353499
LVTVLQRRRP	10	Unmodified	_LVTVLQRRRP_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MSMS	HCT116MG_D190212_S4	4	413.2660827636719	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0151	1	8.7944	8.2944	9.2944	-0.22071								0	0	0	0.97045	1	2757	2757		0.15932	0	1				20832	6242	13248	13305	20002	20002					0.1689555795353499
LVTVSLAS	8	Unmodified	_LVTVSLAS_					0	0	0			REV__PRB3|p.P83Hfs*266|1|0.45|ENSG00000197870|chr12:11268001-11268001|G/-|frameshift_variant	REV__PRB3|p.P83Hfs*266|1|0.45|ENSG00000197870|chr12:11268001-11268001|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	395.2392578125	2	395.239461	788.46437	0.060119	2.3761E-05	-0.15583	-6.1589E-05	-0.095708	-3.7828E-05	395.2393141719633	29.579	0.46796	29.229	28.981	29.449	-0.34921					13	8	2	0	0	0	0.50777	1	10704	10704		40.449	0	1	8990600	+		20833	17439	13249	13306	20003	20003					0.06167595120189162
LVTVTVSA	8	Unmodified	_LVTVTVSA_					0	0	0			REV__CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant	REV__CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	789.4722900390625	1	789.471646	788.46437	0.86375	0.00068191	-0.14073	-0.0001111	0.72302	0.00057081	789.4714009918708	29.616	0.2601	29.267	29.085	29.345	-0.34921					7	4	2	0	0	0	0.53394	1	10715	10715		38.151	0	1	2239100	+		20834	10147	13250	13307	20004	20004					0.06167595120200531
LVTYKGREI	9	Unmodified	_LVTYKGREI_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MSMS	HCT116MG_D190212_S3	3	360.2127685546875	3	360.213358	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.719	1	31.449	30.949	31.949	-0.27028								0	0	0	0.76777	1	11599	11599		8.7454	0	1				20835	1810	13251	13308	20005	20005					0.0825400488570267
LVVLLLTV	8	Unmodified	_LVVLLLTV_					0	0	0			REV__nc|ENSG00000089472|Q9BQS7-4|HEPH	REV__nc|ENSG00000089472|Q9BQS7-4|HEPH	MSMS	HCT116MG_D190212_S1	1	435.3066711425781	2	435.307147	868.599741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.945	1	54.945	54.445	55.445	0								0	0	0	0.8837	1	21085	21085		0.79363	0	1		+		20836	10973	13252	13309	20006	20006					0.16018494981778986
LVVMPKKA	8	Unmodified	_LVVMPKKA_					0	0	0			REV__nc|ENSG00000023228|P28331-3|NDUFS1	REV__nc|ENSG00000023228|P28331-3|NDUFS1	MSMS	HCT116MG_D190212_S3	3	443.2852478027344	2	443.283149	884.551745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.576	1	45.265	44.765	45.765	-0.31094								0	0	0	0.8837	1	17068	17068		10.183	1.5901	1		+		20837	10555	13253	13310	20007	20007					0.10485097790103737
LVVWAGPFVP	10	Unmodified	_LVVWAGPFVP_					0	0	0		ENST00000336576.9_2_2:220149961-220150372:+|nuORF	ENST00000336576.9_2_2:220149961-220150372:+|nuORF	ENST00000336576.9_2_2:220149961-220150372:+|nuORF	MSMS	HCT116MG_D190212_S2	2	362.2107849121094	3	362.211177	1083.6117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.215	1	33.014	32.514	33.514	-0.20096								0	0	0	0.93576	1	12316	12316		7.1017	1.3699	1				20838	7194	13254	13311	20008	20008					0.07324111724983595
LVVYFTKY	8	Unmodified	_LVVYFTKY_					0	0	0		tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	tr|U7SIS3|U7SIS3_FUSNUGlycerol-3-phosphateacyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=plsYPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	516.3018188476562	2	516.791861	1031.56917	0.49305	0.00025481	0.27967	0.00014453	0.77273	0.00039934	516.791878757307	34.625	0.25758	34.467	34.244	34.502	-0.15834					6	4	2	0	0	0	0.33109	1	12893	12893		2.3027	0	1	8845300			20839	18307	13255	13312	20009	20009					0.05464716596748076
LVWALCAGA	9	Unmodified	_LVWALCAGA_					0	0	0			REV__ENST00000301765.9_1_11:60899010-60899583:-|nuORF	REV__ENST00000301765.9_1_11:60899010-60899583:-|nuORF	MSMS	HCT116MG_D190212_S3	3	452.2407531738281	2	452.241481	902.468409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.061	1	56.781	56.281	57.281	-0.27913								0	0	0	0.7696	1	21676	21676		2.3027	0	1		+		20840	14791	13256	13313	20010	20010					0.013273613422370545
LVWNLQWA	8	Unmodified	_LVWNLQWA_					0	0	0		MALT1|p.R576W|1|0.1|ENSG00000172175|chr18:58741987-58741987|C/T|missense_variant	MALT1|p.R576W|1|0.1|ENSG00000172175|chr18:58741987-58741987|C/T|missense_variant	MALT1|p.R576W|1|0.1|ENSG00000172175|chr18:58741987-58741987|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7799682617188	2	515.279452	1028.54435	0.3006	0.0001549	4.2626	0.0021964	4.5632	0.0023513	515.2823389540162	31.137	0.5164	30.87	30.716	31.232	-0.26704					22	9	3	0	0	0	0.50777	1	11571	11571		40.449	1.8338	1	95744000			20841	9314	13257	13314	20011	20011					0.03122081514038655
LVYGRGPA	8	Unmodified	_LVYGRGPA_					0	0	0			REV__ENST00000496202.5_1_1:150297400-150300075:+|nuORF	REV__ENST00000496202.5_1_1:150297400-150300075:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	416.7373962402344	2	416.73742	831.460287	0.31949	0.00013314	0.2811	0.00011715	0.6006	0.00025029	416.7374284555929	47.78	0.25815	47.647	47.532	47.79	-0.13281					7	4	2	0	0	0	0.60268	1	18248	18248		32.117	7.4431	1	18020000	+		20842	16087	13258	13315	20012	20012					0.03781550417136259
LVYVRLDFKR	10	Unmodified	_LVYVRLDFKR_					0	0	0			REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	MULTI-MSMS	HCT116MG_D190212_S1	1	654.8904418945312	2	654.892972	1307.77139	0.81123	0.00053127	-3.9221	-0.0025686	-3.1109	-0.0020373	654.8899320388729	54.968	0.20372	54.968	54.841	55.044	0					5	3	2	0	0	0	0.85662	1	21102	21102		7.2892	1.5574	1	35314000	+		20843	11953	13259	13316	20013	20013					0.12981620002165073
LVYVRLDFKR	10	Unmodified	_LVYVRLDFKR_					0	0	0			REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	654.892972	1307.77139	0.81123	0.00053127	-3.9221	-0.0025686	-3.1109	-0.0020373	654.8899320388729	54.968	0.20372	54.968	54.841	55.044	0	0	0	NaN	7.2892	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35314000	+		20844	11953	13259	13316							0.12981620002165073
LWASYSLEY	9	Unmodified	_LWASYSLEY_					0	0	0		nc|ENSG00000198931|P07741-2|APRT;ENSG00000198931|ENST00000378364|APRT	nc|ENSG00000198931|P07741-2|APRT	nc|ENSG00000198931|P07741-2|APRT	MSMS	HCT116MG_D190212_S2	2	566.2154541015625	2	566.27149	1130.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.41	1	34.235	33.735	34.735	-0.17512								0	0	0	0.76575	1	12801	12801		15.847	1.9411	1				20845	6302	13260	13317	20014	20014					-0.0316166951354262
LWFYFSCNNYY	11	Unmodified	_LWFYFSCNNYY_					0	0	0			REV__TPTE|p.D490N|1|0.22|ENSG00000274391|chr21:10603580-10603580|G/A|missense_variant	REV__TPTE|p.D490N|1|0.22|ENSG00000274391|chr21:10603580-10603580|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	760.3233032226562	2	760.321188	1518.62782	1.216	0.00092455	0.86762	0.00065967	2.0836	0.0015842	760.82334540035	41.568	0.3123	41.568	41.445	41.758	0					12	5	3	0	0	0	0.70073	1	15665	15665		21.537	12.154	1	19476000	+		20846	17656	13261	13318	20015	20015					-0.11074594891056222
LWFYFSCNNYY	11	Unmodified	_LWFYFSCNNYY_					0	0	0			REV__TPTE|p.D490N|1|0.22|ENSG00000274391|chr21:10603580-10603580|G/A|missense_variant	REV__TPTE|p.D490N|1|0.22|ENSG00000274391|chr21:10603580-10603580|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	760.3224487304688	2	760.321188	1518.62782	1.1541	0.00087752	0.53855	0.00040947	1.6927	0.001287	760.3214528527369	41.585	0.41153	41.517	41.293	41.705	-0.068199					20	7	4	0	0	0	0.57532	1	15725	15725		38.176	25.935	1	94433000	+		20847	17656	13261	13318	20016	20016					-0.11074594891056222
LWFYFSCNNYY	11	Unmodified	_LWFYFSCNNYY_					0	0	0			REV__TPTE|p.D490N|1|0.22|ENSG00000274391|chr21:10603580-10603580|G/A|missense_variant	REV__TPTE|p.D490N|1|0.22|ENSG00000274391|chr21:10603580-10603580|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	760.321188	1518.62782	1.216	0.00092455	0.86762	0.00065967	2.0836	0.0015842	760.82334540035	41.568	0.3123	41.568	41.445	41.758	0	0.03168	6.8234E-05	NaN	38.176	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19476000	+		20848	17656	13261	13318							-0.11074594891056222
LWHREAVTA	9	Unmodified	_LWHREAVTA_					0	0	0		nc|ENSG00000189319|Q14153-2|FAM53B;ENST00000494792.1_1_10:126307332-126395327:-|nuORF;ENSG00000189319|ENST00000337318|FAM53B	nc|ENSG00000189319|Q14153-2|FAM53B	nc|ENSG00000189319|Q14153-2|FAM53B	MSMS	HCT116MG_D190212_S3	3	361.52935791015625	3	361.529569	1081.56688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.658	1	43.351	42.851	43.851	-0.30616								0	0	0	0.76837	1	16297	16297		6.6304	0.43853	1				20849	6032	13262	13319	20017	20017					0.02935680911673444
LWHRSWWRFWI	11	Unmodified	_LWHRSWWRFWI_					0	0	0			REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	836.9383544921875	2	836.936037	1671.85752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.065	1	46.944	46.444	47.444	-0.12175								0	0	0	0.96208	1	17945	17945		0	0	1		+		20850	16937	13263	13320	20018	20018					0.04846624627521123
LWKLVPVP	8	Unmodified	_LWKLVPVP_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MSMS	HCT116MG_D190212_S2	2	476.30645751953125	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.309	1	40.236	39.736	40.736	-0.072838								0	0	0	0.8837	1	15197	15197		2.8892	0	1		+		20851	11674	13264	13321	20019	20019					0.11805030558900853
LWKLVPVP	8	Unmodified	_LWKLVPVP_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MSMS	HCT116MG_D190212_S4	4	476.3064270019531	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.938	1	33.553	33.053	34.053	-0.38426								0	0	0	0.8837	1	12372	12372		0.79363	0	1		+		20852	11674	13264	13321	20020	20020					0.11805030558900853
LWLKGLPP	8	Unmodified	_LWLKGLPP_					0	0	0			REV__sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1	REV__sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1	MSMS	HCT116MG_D190212_S3	3	462.2908020019531	2	462.289288	922.564024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.281	1	30.032	29.532	30.532	-0.24946								0	0	0	0.8837	1	11031	11031		2.8892	0	1		+		20853	17576	13265	13322	20021	20021					0.09964457524802128
LWLQRWTRFKY	11	Unmodified	_LWLQRWTRFKY_					0	0	0			REV__nc|ENSG00000239900|P30566-2|ADSL	REV__nc|ENSG00000239900|P30566-2|ADSL	MSMS	HCT116MG_D190212_S1	1	532.9644165039062	3	532.964777	1595.8725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.428	1	12.428	11.928	12.928	0								0	0	0	0.96208	1	3987	3987		0	0	1		+		20854	14347	13266	13323	20022	20022					0.09840071704866205
LWLQRWTRFKY	11	Unmodified	_LWLQRWTRFKY_					0	0	0			REV__nc|ENSG00000239900|P30566-2|ADSL	REV__nc|ENSG00000239900|P30566-2|ADSL	MSMS	HCT116MG_D190212_S1	1	532.8094482421875	3	532.964777	1595.8725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.915	1	12.915	12.415	13.415	0								0	0	0	0.96208	1	4170	4170		0	0	1		+		20855	14347	13266	13323	20023	20023					0.09840071704866205
LWMPLQSPL	9	Unmodified	_LWMPLQSPL_					0	0	0		ENST00000534767.1_1_11:43920467-43920710:+|nuORF	ENST00000534767.1_1_11:43920467-43920710:+|nuORF	ENST00000534767.1_1_11:43920467-43920710:+|nuORF	MSMS	HCT116MG_D190212_S1	1	542.7975463867188	2	542.79662	1083.57869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.582	1	48.582	48.082	49.082	0								0	0	0	0.76694	1	18490	18490		11.64	0	1				20856	8655	13267	13324	20024	20024					0.04024161610641386
LWMRQEEHLGP	11	Unmodified	_LWMRQEEHLGP_					0	0	0		ENST00000392038.6_1_19:40738806-40739223:-|nuORF	ENST00000392038.6_1_19:40738806-40739223:-|nuORF	ENST00000392038.6_1_19:40738806-40739223:-|nuORF	MSMS	HCT116MG_D190212_S1	1	465.9010925292969	3	465.899445	1394.6765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.274	1	17.274	16.774	17.774	0								0	0	0	0.95581	1	5869	5869		1.3296	0	1				20857	7604	13268	13325	20025	20025					-0.0050468153131078
LWNWIPKFIPK	11	Unmodified	_LWNWIPKFIPK_					0	0	0			REV__CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant	REV__CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	481.2833251953125	3	481.283336	1440.82818	0.2157	0.00010381	0.12361	5.9492E-05	0.33931	0.00016331	481.2831698349105	52.56	1.3458	52.56	51.807	53.153	0					46	25	3	0	0	0	0.74191	1	20152	20152		0.50596	0.09769	1	36944000	+		20858	10140	13269	13326	20026	20026					0.1253966755868987
LWQETSLP	8	Unmodified	_LWQETSLP_					0	0	0			REV__nc|ENSG00000067842|Q16720-8|ATP2B3	REV__nc|ENSG00000067842|Q16720-8|ATP2B3	MSMS	HCT116MG_D190212_S3	3	487.2547302246094	2	487.2531	972.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.597	1	57.322	56.822	57.822	-0.27434								0	0	0	0.8837	1	21892	21892		11.114	0	1		+		20859	10733	13270	13327	20027	20027					0.004300786605767826
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	HCT116MG_D190212_S1	1	760.4619750976562	2	760.461022	1518.90749	0.81961	0.00062328	0.30584	0.00023258	1.1254	0.00085586	760.4612547741451	52.228	0.36069	52.228	52.073	52.434	0					11	6	2	0	0	0	0.74191	1	19974	19974		1.0715	0.80244	1	13976000			20860	6160	13271	13328	20028	20028					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	HCT116MG_D190212_S1	1	507.3099060058594	3	507.309773	1518.90749	0.48055	0.00024379	0.24241	0.00012298	0.72296	0.00036676	507.3097815482749	53.127	0.92484	53.127	52.434	53.359	0					42	17	3	0	0	0	0.74191	2	20154	20154;20383		1.1098	1.0264	1	189430000			20861	6160	13271	13328	20029;20030	20029					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	HCT116MG_D190212_S1	1	760.4617309570312	2	760.461022	1518.90749	0.91487	0.00069572	0.22847	0.00017374	1.1433	0.00086947	760.4610699865234	53.089	0.97686	53.089	52.434	53.411	0					60	18	4	0	0	0	0.74191	1	20216	20216		1.0715	0.80244	1	245910000			20862	6160	13271	13328	20031	20031					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	HCT116MG_D190212_S1	1	760.4615478515625	2	760.461022	1518.90749	0.92123	0.00070056	0.26419	0.00020091	1.1854	0.00090146	760.4610938053521	54.257	2.6068	54.257	53.307	55.913	0					195	50	6	0	0	0	0.74191	4	20446	20446;20675;20906;21140		2.7352	2.4662	1	3008099999.9999995			20863	6160	13271	13328	20032;20033;20034;20035	20032					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	HCT116MG_D190212_S2	2	760.4447631835938	2	760.461022	1518.90749	0.97587	0.00074211	0.18201	0.00013841	1.1579	0.00088052	760.4610374733982	55.01	3.0302	54.822	52.863	55.893	-0.18797					197	58	5	0	0	0	0.74191	3	20840	20840;21018;21244		2.7352	2.4282	1	925450000			20864	6160	13271	13328	20036;20037;20038	20036					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	HCT116MG_D190212_S3	3	760.4618530273438	2	760.461022	1518.90749	0.55137	0.00041929	0.60528	0.00046029	1.1566	0.00087959	760.4612551211957	55.087	1.5234	54.796	53.776	55.3	-0.2918					52	28	3	0	0	0	0.74191	2	20675	20675;20912		1.0715	1.0715	1	13253000			20865	6160	13271	13328	20039;20040	20039					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	HCT116MG_D190212_S4	4	760.462158203125	2	760.461022	1518.90749	0.93767	0.00071306	0.13628	0.00010363	1.0739	0.0008167	760.4608597789933	54.223	0.67735	53.899	53.566	54.244	-0.32414					26	12	3	0	0	0	0.74191	1	20213	20213		1.0715	0.80244	1	6155000			20866	6160	13271	13328	20041	20041					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	HCT116MG_D190212_S4	4	760.4609375	2	760.461022	1518.90749	0.96702	0.00073538	0.21016	0.00015982	1.1772	0.0008952	760.4610155510223	55.1	1.1984	54.782	54.146	55.344	-0.31774					72	22	5	0	0	0	0.74191	2	20449	20449;20671		1.0715	0.80244	1	41885000			20867	6160	13271	13328	20042;20043	20042					0.16879314512834753
LWRKQRLWKWW	11	Unmodified	_LWRKQRLWKWW_					0	0	0		chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1	chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1	chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S3	3	843.4827880859375	2	843.480611	1684.94667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.24	1	54.948	54.448	55.448	-0.2918								0	0	0	0.96208	1	20950	20950		0	0	1				20868	443	13272	13329	20044	20044					0.13159459587063793
LWRKQRLWKWW	11	Unmodified	_LWRKQRLWKWW_					0	0	0		chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1	chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1	chr12:54283132-54283827|480|49.51|0.0|22.24|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S4	4	843.4826049804688	2	843.480611	1684.94667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.264	1	54.947	54.447	55.447	-0.31774								0	0	0	0.96208	1	20688	20688		0	0	1				20869	443	13272	13329	20045	20045					0.13159459587063793
LWRRWMRPRMQ	11	Unmodified	_LWRRWMRPRMQ_					0	0	0		ENST00000391992.3_1_12:9181361-9181625:-|nuORF	ENST00000391992.3_1_12:9181361-9181625:-|nuORF	ENST00000391992.3_1_12:9181361-9181625:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	808.4314575195312	2	808.432281	1614.85001	0.8526	0.00068927	-0.87807	-0.00070986	-0.025468	-2.0589E-05	808.4310507651066	33.893	0.20905	33.893	33.763	33.972	0					8	3	3	0	0	0	0.74191	1	12586	12586		2.9952	1.8019	1	11533000			20870	7602	13273	13330	20046	20046					0.067178257639398
LWVGADPGP	9	Unmodified	_LWVGADPGP_					0	0	0			REV__ENST00000381496.7_1_10:433748-435968:-|nuORF	REV__ENST00000381496.7_1_10:433748-435968:-|nuORF	MSMS	HCT116MG_D190212_S1	1	456.2329406738281	2	456.23471	910.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.398	1	22.398	21.898	22.898	0								0	0	0	0.69272	1	7928	7928		19.439	1.304	1		+		20871	15282	13274	13331	20047	20047					-0.00394173165329903
LWYDRRLHYRR	11	Unmodified	_LWYDRRLHYRR_					0	0	0			REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	817.4146728515625	2	817.444757	1632.87496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.197	1	57.018	56.518	57.518	-0.17904								0	0	0	0.96121	1	22081	22081		1.3295	1.0225	1		+		20872	17574	13275	13332	20048	20048					0.08383920162532377
LYAILVEEN	9	Unmodified	_LYAILVEEN_					0	0	0			REV__tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	REV__tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	532.2872314453125	2	532.28714	1062.55973	0.51617	0.00027475	-0.13761	-7.3248E-05	0.37856	0.0002015	532.286983320397	55.506	0.21631	55.214	55.083	55.3	-0.2918					5	3	2	0	0	0	0.74917	1	21082	21082		1.8442	0	1	9798300	+		20873	17934	13276	13333	20049	20049					0.030949035205594555
LYAILVEEN	9	Unmodified	_LYAILVEEN_					0	0	0			REV__tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	REV__tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	532.28714	1062.55973	0.51617	0.00027475	-0.13761	-7.3248E-05	0.37856	0.0002015	532.286983320397	55.506	0.21631	55.214	55.083	55.3	-0.2918	-0.0028889	-0.00037348	NaN	1.8442	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9798300	+		20874	17934	13276	13333							0.030949035205594555
LYAILVEEN	9	Unmodified	_LYAILVEEN_					0	0	0			REV__tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	REV__tr|U7T2Y3|U7T2Y3_FUSNUDhaGproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00503PE=4SV=1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	532.28714	1062.55973	0.56892	0.00030283	0.26661	0.00014191	0.83553	0.00044474	532.2873084344453	55.532	0.15606	55.22	55.09	55.246	-0.312	0.0028889	5.6839E-05	NaN	1.8442	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3266800	+		20875	17934	13276	13333							0.030949035205594555
LYCDVCPKTCK	11	3 Carbamidomethyl (C)	_LYC(Carbamidomethyl (C))DVC(Carbamidomethyl (C))PKTC(Carbamidomethyl (C))K_	LYC(1)DVC(1)PKTC(1)K		LYC(46)DVC(46)PKTC(46)K		0	3	0		ENST00000524031.1_1_6:109739377-109752485:-|nuORF;nc|ENSG00000185250|Q8IXY8-3|PPIL6;ENSG00000185250|ENST00000521072|PPIL6;nc|ENSG00000185250|Q8IXY8-2|PPIL6	ENST00000524031.1_1_6:109739377-109752485:-|nuORF	ENST00000524031.1_1_6:109739377-109752485:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	722.3251953125	2	722.32509	1442.63563	0.55482	0.00040076	-0.46589	-0.00033652	0.088933	6.4239E-05	722.3248457810259	24.58	0.36442	24.496	24.289	24.653	-0.083694					16	6	4	0	0	0	0.50491	1	8749	8749		45.7	16.618	1	9930700			20876	5813	13277	13334	20050	20050	34;35;36				-0.06798526957481954
LYCDVCPKTCK	11	3 Carbamidomethyl (C)	_LYC(Carbamidomethyl (C))DVC(Carbamidomethyl (C))PKTC(Carbamidomethyl (C))K_					0	3	0		ENST00000524031.1_1_6:109739377-109752485:-|nuORF;nc|ENSG00000185250|Q8IXY8-3|PPIL6;ENSG00000185250|ENST00000521072|PPIL6;nc|ENSG00000185250|Q8IXY8-2|PPIL6	ENST00000524031.1_1_6:109739377-109752485:-|nuORF	ENST00000524031.1_1_6:109739377-109752485:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	722.32509	1442.63563	1.024	0.00073965	-0.83856	-0.00060571	0.18543	0.00013394	722.3240704588677	24.79	0.15596	24.414	24.295	24.451	-0.37625	-0.017816	-0.00074941	NaN	45.7	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11685000			20877	5813	13277	13334			34;35;36				-0.06798526957481954
LYDKKVDE	8	Unmodified	_LYDKKVDE_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	HCT116MG_D190212_S1	1	505.2638854980469	2	505.263665	1008.51278	0.19426	9.8152E-05	0.75221	0.00038007	0.94647	0.00047822	505.2638410785898	48.074	0.25869	48.074	47.944	48.203	0					6	4	2	0	0	0	0.8506	1	18313	18313		5.2307	0.47466	1	7265100			20878	4951	13278	13335	20051	20051					0.008860439694331035
LYDLLRNTH	9	Unmodified	_LYDLLRNTH_					0	0	0		DYRK1B|p.Q545Sfs*19|1|0.42|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant;DYRK1B|p.Q545Pfs*30|2|0.34|ENSG00000105204|chr19:39825971-39825972|-/G|frameshift_variant;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B	DYRK1B|p.Q545Sfs*19|1|0.42|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	DYRK1B|p.Q545Sfs*19|1|0.42|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	382.2071533203125	3	382.208495	1143.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.229	1	24.229	23.729	24.729	0								0	0	0	0.76897	1	8665	8665		4.5289	0.93237	1				20879	743	13279	13336	20052	20052					0.03759932737557392
LYETYAEQTW	10	Unmodified	_LYETYAEQTW_					0	0	0			REV__nc|ENSG00000075399|Q9Y2B5-2|VPS9D1	REV__nc|ENSG00000075399|Q9Y2B5-2|VPS9D1	MSMS	HCT116MG_D190212_S2	2	652.2938232421875	2	652.295693	1302.57683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.389	1	22.004	21.504	22.504	-0.3852								0	0	0	0.89062	1	7929	7929		17.113	0.96379	1		+		20880	17079	13280	13337	20053	20053					-0.0623522066427995
LYFALSKF	8	Unmodified	_LYFALSKF_					0	0	0			REV__TMEM72|p.L205*|1|0.42|ENSG00000187783|chr10:44934917-44934917|C/-|frameshift_variant	REV__TMEM72|p.L205*|1|0.42|ENSG00000187783|chr10:44934917-44934917|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	494.77996826171875	2	494.778754	987.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.179	1	46.808	46.308	47.308	-0.37038								0	0	0	0.8837	1	17443	17443		11.114	0	1		+		20881	13935	13281	13338	20054	20054					0.04868447425292288
LYFFLMFRYPM	11	Unmodified	_LYFFLMFRYPM_					0	0	0		ENST00000524119.1_1_8:124031433-124042893:-|nuORF;ENSG00000136986|ENST00000259512|DERL1	ENST00000524119.1_1_8:124031433-124042893:-|nuORF	ENST00000524119.1_1_8:124031433-124042893:-|nuORF	MSMS	HCT116MG_D190212_S2	2	764.4190673828125	2	764.379994	1526.74544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.466	1	55.281	54.781	55.781	-0.18565								0	0	0	0.95521	1	21382	21382		3.5965	0.31518	1				20882	3454	13282	13339	20055	20055					0.0031326644402724924
LYFPSLPREDE	11	Unmodified	_LYFPSLPREDE_					0	0	0			REV__nc|ENSG00000138640|O94988-3|FAM13A	REV__nc|ENSG00000138640|O94988-3|FAM13A	MSMS	HCT116MG_D190212_S3	3	683.3363647460938	2	683.337892	1364.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.614	1	21.633	21.133	22.133	0.018446								0	0	0	0.94416	1	7540	7540		9.3831	0	1		+		20883	12232	13283	13340	20056	20056					-0.0065126984752623684
LYGLIQVPNY	10	Unmodified	_LYGLIQVPNY_					0	0	0		FHDC1|p.T439Pfs*2|1|0.28|ENSG00000137460|chr4:152972467-152972467|A/-|frameshift_variant;FHDC1|p.A494Gfs*8|1|0.28|ENSG00000137460|chr4:152974766-152974767|-/G|frameshift_variant;FHDC1|p.D775Gfs*66|1|0.11|ENSG00000137460|chr4:152975612-152975613|-/G|frameshift_variant;ENSG00000137460|ENST00000511601|FHDC1	FHDC1|p.T439Pfs*2|1|0.28|ENSG00000137460|chr4:152972467-152972467|A/-|frameshift_variant	FHDC1|p.T439Pfs*2|1|0.28|ENSG00000137460|chr4:152972467-152972467|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	393.8837890625	3	393.88513	1178.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.278	1	27.946	27.446	28.446	-0.33138								0	0	0	0.93938	1	10161	10161		7.1017	1.3699	1				20884	3477	13284	13341	20057	20057					0.051388716829023906
LYHLKIFERWY	11	Unmodified	_LYHLKIFERWY_					0	0	0			REV__ENSG00000181562|ENST00000326842|EDDM3A	REV__ENSG00000181562|ENST00000326842|EDDM3A	MSMS	HCT116MG_D190212_S2	2	784.4240112304688	2	784.424636	1566.83472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.786	1	49.622	49.122	50.122	-0.16369								0	0	0	0.95521	1	19064	19064		3.5965	0	1		+		20885	13695	13285	13342	20058	20058					0.07397560719414287
LYHLKIFERWY	11	Unmodified	_LYHLKIFERWY_					0	0	0			REV__ENSG00000181562|ENST00000326842|EDDM3A	REV__ENSG00000181562|ENST00000326842|EDDM3A	MSMS	HCT116MG_D190212_S3	3	784.4249267578125	2	784.424636	1566.83472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.001	1	49.685	49.185	50.185	-0.31525								0	0	0	0.95521	1	18843	18843		3.5965	0	1		+		20886	13695	13285	13342	20059	20059					0.07397560719414287
LYIEGHMNPK	10	Unmodified	_LYIEGHMNPK_					0	0	0		nc|ENSG00000160953|Q2TAK8-2|PWWP3A;ENST00000587460.5_1_19:1358605-1376572:+|nuORF;ENSG00000160953|ENST00000591337|PWWP3A;nc|ENSG00000160953|Q2TAK8-3|PWWP3A;ENST00000591433.5_1_19:1358605-1371443:+|nuORF	nc|ENSG00000160953|Q2TAK8-2|PWWP3A	nc|ENSG00000160953|Q2TAK8-2|PWWP3A	MSMS	HCT116MG_D190212_S3	3	601.3069458007812	2	601.305341	1200.59613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.978	1	43.671	43.171	44.171	-0.30616								0	0	0	0.93854	1	16426	16426		7.2892	0.56607	1				20887	4471	13286	13343	20060	20060					0.003854571456258782
LYIFWLAWHI	10	Unmodified	_LYIFWLAWHI_					0	0	0		tr|U7SSC6|U7SSC6_FUSNUCysteine/O-acetylserineeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01686PE=4SV=1	tr|U7SSC6|U7SSC6_FUSNUCysteine/O-acetylserineeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01686PE=4SV=1	tr|U7SSC6|U7SSC6_FUSNUCysteine/O-acetylserineeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01686PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	454.2838439941406	3	454.585015	1360.73321	0.18068	8.2135E-05	-0.16734	-7.607E-05	0.013343	6.0655E-06	454.5848486491039	52.876	0.30879	52.876	52.69	52.999	0					8	5	2	0	0	0	0.31123	1	20258	20258		2.086	0	1	7605900			20888	18412	13287	13344	20061	20061					0.06727734087507997
LYIFYPTPLY	10	Unmodified	_LYIFYPTPLY_					0	0	0			REV__L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|40|1|anti-sense	REV__L1MB8_dup1763|chr2:109988481-109989376:-|1.5294594278598173|0.259115602067641|2.56|476.0|40|1|anti-sense	MULTI-SECPEP	HCT116MG_D190212_S2	2	430.2644958496094	3	430.565397	1288.67436	0.17399	7.4915E-05	1.9059	0.00082062	2.0799	0.00089553	430.56617011509934	41.695	0.2075	41.627	41.549	41.756	-0.068199					6	3	2	0	0	0	0.30961	1	15790	15790		9.544	2.5069	1	20269000	+		20889	16944	13288	13345	20062	20062					0.041572130025315346
LYKNFIYYDKL	11	Unmodified	_LYKNFIYYDKL_					0	0	0			REV__nc|ENSG00000161973|Q96M95-2|CCDC42	REV__nc|ENSG00000161973|Q96M95-2|CCDC42	MSMS	HCT116MG_D190212_S2	2	493.93609619140625	3	493.934261	1478.78095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.469	1	19.099	18.599	19.599	-0.3695								0	0	0	0.95772	1	6752	6752		0.92553	0	1		+		20890	12863	13289	13346	20063	20063					0.06071343497023918
LYKNLEIIDLY	11	Unmodified	_LYKNLEIIDLY_					0	0	0		ENST00000573577.5_1_17:5336118-5336172:+|nuORF	ENST00000573577.5_1_17:5336118-5336172:+|nuORF	ENST00000573577.5_1_17:5336118-5336172:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	699.333251953125	2	698.889761	1395.76497	0.83481	0.00058344	-0.084473	-5.9037E-05	0.75033	0.0005244	698.8893527919168	56.892	0.15777	56.713	56.582	56.739	-0.17904					6	2	3	0	0	0	0.3256	1	21945	21945		29.841	8.3036	1	24635000			20891	8909	13290	13347	20064	20064					0.08291637260140305
LYKSSGLLRSS	11	Unmodified	_LYKSSGLLRSS_					0	0	0			REV__ENST00000476385.1_1_3:142660339-142660513:+|nuORF	REV__ENST00000476385.1_1_3:142660339-142660513:+|nuORF	MSMS	HCT116MG_D190212_S1	1	404.2330627441406	3	404.231189	1209.67174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.264	1	47.264	46.764	47.764	0								0	0	0	0.95686	1	17954	17954		1.1098	0.48293	1		+		20892	15918	13291	13348	20065	20065					0.07528757597583535
LYKVTAKKK	9	Unmodified	_LYKVTAKKK_					0	0	0			REV__ENSG00000147316|ENST00000344683|MCPH1	REV__ENSG00000147316|ENST00000344683|MCPH1	MSMS	HCT116MG_D190212_S4	4	360.2377014160156	3	360.237615	1077.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.723	1	59.452	58.952	59.952	-0.27156								0	0	0	0.77018	1	22482	22482		0.26902	0	1		+		20893	12509	13292	13349	20066	20066					0.15527758679127146
LYLARLYRWVQ	11	Unmodified	_LYLARLYRWVQ_					0	0	0			REV__ENSG00000260903|ENST00000562532|XKR7	REV__ENSG00000260903|ENST00000562532|XKR7	MULTI-MSMS	HCT116MG_D190212_S2	2	741.873779296875	2	740.924803	1479.83505	1.0016	0.00074208	-0.46454	-0.00034419	0.53702	0.00039789	741.4251842318666	54.364	0.45953	54.174	54.048	54.507	-0.18939					9	8	2	0	0	0	0.74191	1	21002	21002		6.2058	2.6093	1	6417200	+		20894	14417	13293	13350	20067	20067					0.11432980439258245
LYLHRYYFEVE	11	Unmodified	_LYLHRYYFEVE_					0	0	0		ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	MULTI-MSMS	HCT116MG_D190212_S1	1	766.3836669921875	2	766.382634	1530.75072	0.79915	0.00061246	0.47177	0.00036156	1.2709	0.00097402	766.3828848727156	36.286	0.21484	36.286	36.15	36.365	0					5	3	2	0	0	0	0.71776	1	13552	13552		15.248	5.0979	1	11403000			20895	6470	13294	13351	20068	20068					0.006569848318576987
LYLKGLKTNT	10	Unmodified	_LYLKGLKTNT_					0	0	0			REV__ENST00000559016.1_1_15:49426483-49429634:-|nuORF	REV__ENST00000559016.1_1_15:49426483-49429634:-|nuORF	MSMS	HCT116MG_D190212_S3	3	575.8438720703125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.393	1	48.077	47.577	48.577	-0.31596								0	0	0	0.94339	1	18199	18199		6.2058	2.6093	1		+		20896	10281	13295	13352	20069	20069					0.10690847091291289
LYLKMKPV	8	Unmodified	_LYLKMKPV_					0	0	0		RAG1|p.R897Q|1|0.28|ENSG00000166349|chr11:36575994-36575994|G/A|missense_variant;nc|ENSG00000166349|P15918-2|RAG1;ENSG00000166349|ENST00000299440|RAG1	RAG1|p.R897Q|1|0.28|ENSG00000166349|chr11:36575994-36575994|G/A|missense_variant	RAG1|p.R897Q|1|0.28|ENSG00000166349|chr11:36575994-36575994|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	496.30426025390625	2	496.304081	990.59361	0.3896	0.00019336	-0.18151	-9.0086E-05	0.20808	0.00010327	496.3039085083582	45.277	2.275	45.184	44.421	46.696	-0.092476					90	43	3	0	0	0	0.86564	1	17527	17527		2.5775	0.27475	1	74352000			20897	4844	13296	13353	20070	20070					0.09793653478629949
LYLLCNPEFT	10	Unmodified	_LYLLCNPEFT_					0	0	0		nc|ENSG00000292277|Q9UJ98-2|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3	nc|ENSG00000292277|Q9UJ98-2|STAG3	nc|ENSG00000292277|Q9UJ98-2|STAG3	MULTI-MSMS	HCT116MG_D190212_S3	3	606.8015747070312	2	606.8021	1211.58965	0.50488	0.00030636	-0.93379	-0.00056663	-0.42892	-0.00026027	606.8011277216797	28.461	0.52189	28.255	27.811	28.333	-0.20593					19	9	3	0	0	0	0.7974	1	10266	10266		12.241	2.8575	1	6508300			20898	1178	13297	13354	20071	20071					-0.007684808057547343
LYLNYKTRLYQ	11	Unmodified	_LYLNYKTRLYQ_					0	0	0			REV__ENSG00000132467|ENST00000254803|UTP3	REV__ENSG00000132467|ENST00000254803|UTP3	MULTI-MSMS	HCT116MG_D190212_S1	1	737.9082641601562	2	737.906276	1473.798	0.5498	0.0004057	1.5131	0.0011165	2.0629	0.0015222	737.9076505097889	39.033	0.20811	39.033	38.903	39.111	0					6	3	2	0	0	0	0.74191	1	14644	14644		4.5289	1.2476	1	9319600	+		20899	11991	13298	13355	20072	20072					0.08005264102848741
LYLNYKTRLYQ	11	Unmodified	_LYLNYKTRLYQ_					0	0	0			REV__ENSG00000132467|ENST00000254803|UTP3	REV__ENSG00000132467|ENST00000254803|UTP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	737.906276	1473.798	0.5498	0.0004057	1.5131	0.0011165	2.0629	0.0015222	737.9076505097889	39.033	0.20811	39.033	38.903	39.111	0	0.048964	0.00078154	NaN	4.5289	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9319600	+		20900	11991	13298	13355							0.08005264102848741
LYLNYKTRLYQ	11	Unmodified	_LYLNYKTRLYQ_					0	0	0			REV__ENSG00000132467|ENST00000254803|UTP3	REV__ENSG00000132467|ENST00000254803|UTP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	737.906276	1473.798	1.0776	0.00079517	0.58381	0.0004308	1.6614	0.001226	737.9071716570292	39.02	0.30956	38.935	38.754	39.063	-0.084618	-0.048964	-0.0005899	NaN	4.5289	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48034000	+		20901	11991	13298	13355							0.08005264102848741
LYLPVRQG	8	Unmodified	_LYLPVRQG_					0	0	0			REV__nc|ENSG00000205307|Q8TEE9|SAP25	REV__nc|ENSG00000205307|Q8TEE9|SAP25	MULTI-MSMS	HCT116MG_D190212_S4	4	473.7937316894531	2	473.279452	944.544351	0.30304	0.00014342	0.54353	0.00025724	0.84658	0.00040067	473.2795441851978	48.173	0.25916	47.806	47.676	47.935	-0.36728					7	4	2	0	0	0	0.60268	1	17851	17851		32.117	5.7757	1	7168200	+		20902	14221	13299	13356	20073	20073					0.06986081514037323
LYMASRLKIK	10	Unmodified	_LYMASRLKIK_					0	0	0			REV__ENSG00000226761|ENST00000533467|TAS2R46	REV__ENSG00000226761|ENST00000533467|TAS2R46	MSMS	HCT116MG_D190212_S3	3	408.2507629394531	3	408.249526	1221.72675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.991	1	45.679	45.179	46.179	-0.31199								0	0	0	0.95381	1	17236	17236		3.8763	2.2841	1		+		20903	14311	13300	13357	20074	20074					0.12475472864457515
LYMEALLYHLF	11	Unmodified	_LYMEALLYHLF_					0	0	0			REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|117|3|anti-sense	REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|117|3|anti-sense	MSMS	HCT116MG_D190212_S4	4	706.8699340820312	2	706.867774	1411.72099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.928	1	42.553	42.053	43.053	-0.37493								0	0	0	0.94416	1	15796	15796		9.3831	2.66	1		+		20904	16946	13301	13358	20075	20075					0.03160329562138031
LYNQLYIQLMI	11	Unmodified	_LYNQLYIQLMI_					0	0	0			REV__tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1	REV__tr|U7SZF0|U7SZF0_FUSNUFidodomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00727PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	706.3875122070312	2	706.386331	1410.75811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.186	1	46.872	46.372	47.372	-0.31405								0	0	0	0.95023	1	17713	17713		6.2058	1.3088	1		+		20905	17877	13302	13359	20076	20076					0.06916001107902048
LYNTRYSSKRR	11	Unmodified	_LYNTRYSSKRR_					0	0	0		nc|ENSG00000149295|P14416-2|DRD2;ENSG00000149295|ENST00000362072|DRD2;nc|ENSG00000149295|P14416-3|DRD2;ENST00000539420.1_1_11:113286028-113288807:-|nuORF;ENST00000540600.5_1_11:113285027-113346393:-|nuORF	nc|ENSG00000149295|P14416-2|DRD2	nc|ENSG00000149295|P14416-2|DRD2	MULTI-MSMS	HCT116MG_D190212_S1	1	722.3720092773438	2	722.394399	1442.77424	0.65749	0.00047497	0.05615	4.0562E-05	0.71364	0.00051553	722.3948414280403	36.521	0.20952	36.521	36.417	36.627	0					5	3	2	0	0	0	0.73696	1	13617	13617		8.1555	2.4237	1	4303300			20906	4053	13303	13360	20077	20077					0.07056843389000278
LYPSPSLQPP	10	Unmodified	_LYPSPSLQPP_					0	0	0		ENSG00000163497|ENST00000295727|FEV	ENSG00000163497|ENST00000295727|FEV	ENSG00000163497|ENST00000295727|FEV	MSMS	HCT116MG_D190212_S3	3	549.7931518554688	2	549.795132	1097.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.66	1	23.621	23.121	24.121	-0.03968								0	0	0	0.85631	1	8365	8365		21.537	0	1				20907	4603	13304	13361	20078	20078					0.030826097574845335
LYQADEAAA	9	Unmodified	_LYQADEAAA_					0	0	0		nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;nc|ENSG00000129646|Q9H0J4-3|QRICH2;ENST00000524722.1_2_17:74270319-74300575:-|nuORF	nc|ENSG00000129646|Q9H0J4|QRICH2	nc|ENSG00000129646|Q9H0J4|QRICH2	MULTI-MSMS	HCT116MG_D190212_S1	1	951.4428100585938	1	951.441802	950.434526	0.87498	0.00083249	0.055137	5.2459E-05	0.93012	0.00088495	951.4415934637176	30.425	0.31162	30.425	30.296	30.607	0					9	5	2	0	0	0	0.031089	1	11166	11166		85.272	3.3818	1	8287500			20908	3040	13305	13362	20079	20079					-0.04267388615824075
LYQLCTWAPL	10	Unmodified	_LYQLCTWAPL_					0	0	0			REV__ENST00000381920.7_1_16:8715616-8719462:+|nuORF	REV__ENST00000381920.7_1_16:8715616-8719462:+|nuORF	MSMS	HCT116MG_D190212_S2	2	604.31298828125	2	604.312635	1206.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.725	1	45.623	45.123	46.123	-0.1014								0	0	0	0.92917	1	17397	17397		9.3831	0	1		+		20909	15287	13306	13363	20080	20080					0.015675292937885388
LYQNFYEERA	10	Unmodified	_LYQNFYEERA_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MSMS	HCT116MG_D190212_S2	2	667.2804565429688	2	666.814584	1331.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.744	1	23.361	22.861	23.861	-0.38324								0	0	0	0.91638	1	8477	8477		12.241	2.8575	1				20910	5327	13307	13364	20081	20081					-0.03792709678805295
LYRVFCRLRP	10	Unmodified	_LYRVFCRLRP_					0	0	0		ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-MSMS	HCT116MG_D190212_S1	1	662.3814697265625	2	661.879342	1321.74413	0.55758	0.00036905	0.92814	0.00061432	1.4857	0.00098337	661.8798335075204	51.092	1.132	51.092	50.368	51.5	0					30	21	2	0	0	0	0.86862	1	19533	19533		6.2058	3.2105	1	17528000			20911	5487	13308	13365	20082	20082					0.09612813190142333
LYSRTLFFKDQ	11	Unmodified	_LYSRTLFFKDQ_					0	0	0		ENST00000420826.6_1_17:73164367-73164424:-|nuORF	ENST00000420826.6_1_17:73164367-73164424:-|nuORF	ENST00000420826.6_1_17:73164367-73164424:-|nuORF	MSMS	HCT116MG_D190212_S1	1	709.3775634765625	2	709.377352	1416.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.638	1	50.638	50.138	51.138	0								0	0	0	0.95023	1	19327	19327		6.2058	0	1				20912	7782	13309	13366	20083	20083					0.0484500217742152
LYTKNYLP	8	Unmodified	_LYTKNYLP_					0	0	0		RBM27|p.R138Efs*39|1|0.53|ENSG00000091009|chr5:146229727-146229727|A/-|frameshift_variant;RBM27|p.Q122Rfs*55|1|0.24|ENSG00000091009|chr5:146229003-146229003|C/-|frameshift_variant;RBM27|p.K816Tfs*63|2|0.2|ENSG00000091009|chr5:146267757-146267758|AA/-|frameshift_variant;ENSG00000091009|ENST00000265271|RBM27	RBM27|p.R138Efs*39|1|0.53|ENSG00000091009|chr5:146229727-146229727|A/-|frameshift_variant	RBM27|p.R138Efs*39|1|0.53|ENSG00000091009|chr5:146229727-146229727|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	506.7566833496094	2	506.279118	1010.54368	0.43662	0.00022105	-3.3971	-0.0017199	-2.9605	-0.0014988	506.27688191409663	26.475	0.26053	26.475	26.24	26.501	0					8	4	3	0	0	0	0.31855	1	9482	9482		8.5933	0.68312	1	5579400			20913	1550	13310	13367	20084	20084					0.038832420743119656
LYVPQAVR	8	Unmodified	_LYVPQAVR_					0	0	0			REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF	REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	473.27923583984375	2	473.279452	944.544351	0.10774	5.099E-05	-0.14778	-6.9943E-05	-0.040046	-1.8953E-05	473.2792256278997	47.815	0.29853	47.815	47.646	47.944	0					7	5	2	0	0	0	0.50777	1	18182	18182		40.449	4.4044	1	17388000	+		20914	16341	13311	13368	20085	20085					0.06986081514037323
LYYLLLITRRR	11	Unmodified	_LYYLLLITRRR_					0	0	0			REV__ENSG00000121680|ENST00000378750|PEX16	REV__ENSG00000121680|ENST00000378750|PEX16	MSMS	HCT116MG_D190212_S4	4	740.4651489257812	2	740.461553	1478.90855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.362	1	52.018	51.518	52.518	-0.34462								0	0	0	0.95954	1	19517	19517		1.3295	0.13619	1		+		20915	11720	13312	13369	20086	20086					0.18825528881711762
LYYYRDRDWRW	11	Unmodified	_LYYYRDRDWRW_					0	0	0		ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	MSMS	HCT116MG_D190212_S3	3	846.406005859375	2	846.407506	1690.80046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.067	1	57.796	57.296	58.296	-0.27042								0	0	0	0.96208	1	22081	22081		0	0	1				20916	6560	13313	13370	20087	20087					-0.017308874395212115
MAAAFRKAAK	10	Unmodified	_MAAAFRKAAK_					0	0	0		nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENSG00000183520|ENST00000373014|UTP11;ENST00000486563.1_1_1:38478474-38482093:+|nuORF	nc|ENSG00000183520|Q9Y3A2-2|UTP11	nc|ENSG00000183520|Q9Y3A2-2|UTP11	MULTI-MSMS	HCT116MG_D190212_S2	2	532.80029296875	2	532.805311	1063.59607	0.50848	0.00027092	-3.2591	-0.0017365	-2.7506	-0.0014655	533.3066352847331	36.713	0.25841	36.598	36.447	36.705	-0.11478					8	4	3	0	0	0	0.58749	1	13759	13759		29.082	7.3349	1	21615000			20917	5721	13314	13371	20088	20088					0.06681501936304812
MACGCDCDCNH	11	Unmodified	_MACGCDCDCNH_					0	0	0		ENST00000451025.6_2_6:43608345-43608465:+|nuORF	ENST00000451025.6_2_6:43608345-43608465:+|nuORF	ENST00000451025.6_2_6:43608345-43608465:+|nuORF	MSMS	HCT116MG_D190212_S3	3	391.28424072265625	3	391.107973	1170.30209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0864	1	2.1417	1.6417	2.6417	0.055284								0	0	0	0.96208	1	633	633		0	0	1				20918	7984	13315	13372	20089	20089					-0.2762488727407799
MACGCDCDCNH	11	Unmodified	_MACGCDCDCNH_					0	0	0		ENST00000451025.6_2_6:43608345-43608465:+|nuORF	ENST00000451025.6_2_6:43608345-43608465:+|nuORF	ENST00000451025.6_2_6:43608345-43608465:+|nuORF	MSMS	HCT116MG_D190212_S4	4	391.2841796875	3	391.107973	1170.30209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6402	1	4.3757	3.8757	4.8757	-0.26456								0	0	0	0.96208	1	1417	1417		0	0	1				20919	7984	13315	13372	20090	20090					-0.2762488727407799
MACGCDCDCNH	11	Unmodified	_MACGCDCDCNH_					0	0	0		ENST00000451025.6_2_6:43608345-43608465:+|nuORF	ENST00000451025.6_2_6:43608345-43608465:+|nuORF	ENST00000451025.6_2_6:43608345-43608465:+|nuORF	MSMS	HCT116MG_D190212_S4	4	391.2841796875	3	391.107973	1170.30209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6481	1	5.3866	4.8866	5.8866	-0.26151								0	0	0	0.96208	1	1722	1722		0	0	1				20920	7984	13315	13372	20091	20091					-0.2762488727407799
MACGCDCDCNH	11	Unmodified	_MACGCDCDCNH_					0	0	0		ENST00000451025.6_2_6:43608345-43608465:+|nuORF	ENST00000451025.6_2_6:43608345-43608465:+|nuORF	ENST00000451025.6_2_6:43608345-43608465:+|nuORF	MSMS	HCT116MG_D190212_S4	4	391.2842102050781	3	391.107973	1170.30209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.6698	1	6.413	5.913	6.913	-0.25684								0	0	0	0.96208	1	2041	2041		0	0	1				20921	7984	13315	13372	20092	20092					-0.2762488727407799
MADENKNEY	9	Oxidation (M)	_M(Oxidation (M))ADENKNEY_		M(1)ADENKNEY		M(85)ADENKNEY	0	0	1		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;FNBP1L|p.T313Pfs*3|1|0.22|ENSG00000137942|chr1:93534852-93534852|A/-|frameshift_variant	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	HCT116MG_D190212_S1	1	565.2274780273438	2	565.226953	1128.43935	0.60775	0.00034352	-0.079464	-4.4915E-05	0.52829	0.0002986	565.2267483088388	17.489	0.2086	17.489	17.411	17.62	0					5	3	2	0	0	0	0.031831	1	5984	5984		84.522	44.572	1	4693100			20922	3517	13316	13373	20093	20093		82			-0.11972872535352508
MADENKNEY	9	Oxidation (M)	_M(Oxidation (M))ADENKNEY_		M(1)ADENKNEY		M(76)ADENKNEY	0	0	1		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;FNBP1L|p.T313Pfs*3|1|0.22|ENSG00000137942|chr1:93534852-93534852|A/-|frameshift_variant	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	HCT116MG_D190212_S2	2	565.227294921875	2	565.226953	1128.43935	0.40446	0.00022861	-0.037824	-2.1379E-05	0.36664	0.00020723	565.2268518985504	17.959	0.26118	17.603	17.441	17.702	-0.35647					6	4	2	0	0	0	0.048237	1	6158	6158		75.571	42.785	1	8156400			20923	3517	13316	13373	20094	20094		82			-0.11972872535352508
MADENKNEY	9	Unmodified	_MADENKNEY_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;FNBP1L|p.T313Pfs*3|1|0.22|ENSG00000137942|chr1:93534852-93534852|A/-|frameshift_variant	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	HCT116MG_D190212_S1	1	557.2306518554688	2	557.229496	1112.44444	0.40156	0.00022376	0.1601	8.9215E-05	0.56166	0.00031297	557.229475775455	19.835	0.3661	19.835	19.704	20.07	0					13	6	3	0	0	0	2.7271E-05	1	6915	6915		211.85	129.96	1	33610000			20924	3517	13316	13374	20095	20095					-0.1072856867272094
MADENKNEY	9	Unmodified	_MADENKNEY_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;FNBP1L|p.T313Pfs*3|1|0.22|ENSG00000137942|chr1:93534852-93534852|A/-|frameshift_variant	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	HCT116MG_D190212_S2	2	557.256103515625	2	557.229496	1112.44444	0.29801	0.00016606	-0.17434	-9.7145E-05	0.12368	6.8917E-05	557.22952222564	20.375	0.52898	19.995	19.813	20.342	-0.37949					24	9	5	0	0	0	0.0001093	2	7115	7115;7121		197.81	135.23	1	101090000			20925	3517	13316	13374	20096;20097	20096					-0.1072856867272094
MADENKNEY	9	Unmodified	_MADENKNEY_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;FNBP1L|p.T313Pfs*3|1|0.22|ENSG00000137942|chr1:93534852-93534852|A/-|frameshift_variant	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	HCT116MG_D190212_S3	3	557.2566528320312	2	557.229496	1112.44444	0.3778	0.00021052	-0.32209	-0.00017948	0.055712	3.1044E-05	557.2293485614157	19.612	0.20832	19.672	19.542	19.75	0.05983					5	3	2	0	0	0	0.16285	1	6755	6755		45.74	29.591	1	2061100			20926	3517	13316	13374	20098	20098					-0.1072856867272094
MAECGHGD	8	Unmodified	_MAECGHGD_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MSMS	HCT116MG_D190212_S3	3	410.1415100097656	2	410.141638	818.268723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.414	1	28.208	27.708	28.708	-0.20593								0	0	0	0.8837	1	10281	10281		5.2307	2.6532	1		+		20927	12449	13317	13375	20099	20099					-0.14768061667803067
MAEDGLEEEN	10	Unmodified	_MAEDGLEEEN_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MSMS	HCT116MG_D190212_S1	1	569.1826782226562	2	568.724243	1135.43393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.873	1	19.873	19.373	20.373	0								0	0	0	0.75654	1	6916	6916		34.402	0	1		+		20928	11987	13318	13376	20100	20100					-0.12836596117836052
MAFFERRYQER	11	Unmodified	_MAFFERRYQER_					0	0	0		nc|ENSG00000188732|A4D161-3|FAM221A;nc|ENSG00000188732|A4D161-2|FAM221A;ENSG00000188732|ENST00000344962|FAM221A	nc|ENSG00000188732|A4D161-3|FAM221A	nc|ENSG00000188732|A4D161-3|FAM221A	MULTI-SECPEP	HCT116MG_D190212_S4	4	510.9174499511719	3	511.585749	1531.73542	0.19087	9.7646E-05	-0.29761	-0.00015225	-0.10674	-5.4607E-05	511.5856841111411	29.356	0.20757	29.007	28.825	29.033	-0.34921					5	3	2	0	0	0	0.36524	1	10577	10577		6.2344	3.3911	1	3009200			20929	5995	13319	13377	20101	20101					-0.009182052370078964
MAFKKILKL	9	Unmodified	_MAFKKILKL_					0	0	0		ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant;ABCC5|p.L1090Cfs*26|1|0.47|ENSG00000114770|chr3:183947469-183947469|A/-|frameshift_variant;ABCC5|p.L1090Vfs*62|2|0.19|ENSG00000114770|chr3:183947469-183947470|AA/-|frameshift_variant;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5	ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant	ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	546.3545532226562	2	546.354105	1090.69366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.086	1	61.855	61.355	62.355	-0.23129								0	0	0	0.77008	1	23710	23710		0.6015	0.076735	1				20930	10	13320	13378	20102	20102					0.15193890812429345
MAFRFPNK	8	Unmodified	_MAFRFPNK_					0	0	0			REV__SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant	REV__SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	505.7670593261719	2	505.765655	1009.51676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.213	1	18.213	17.713	18.713	0								0	0	0	0.8837	1	6247	6247		7.9102	0.62092	1		+		20931	11307	13321	13379	20103	20103					0.012378549821505658
MAGALRKL	8	Unmodified	_MAGALRKL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;KANK2|p.P430Rfs*5|1|0.23|ENSG00000197256|chr19:11178681-11178681|G/-|frameshift_variant;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MSMS	HCT116MG_D190212_S4	4	430.26458740234375	2	430.262748	858.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.719	1	47.349	46.849	47.849	-0.36907								0	0	0	0.8837	1	17649	17649		2.8892	0	1				20932	6131	13322	13380	20104	20104					0.07602756470487293
MAGKKKKL	8	Unmodified	_MAGKKKKL_					0	0	0			REV__SMAD9|p.A424Cfs*2|1|0.07|ENSG00000120693|chr13:36848811-36848812|-/C|frameshift_variant	REV__SMAD9|p.A424Cfs*2|1|0.07|ENSG00000120693|chr13:36848811-36848812|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	452.2946472167969	2	452.294048	902.573543	-0.032147	-1.454E-05	2.2661	0.001025	2.234	0.0010104	452.2948313110545	48.794	0.20498	48.794	48.666	48.871	0					5	3	2	0	0	0	0.88026	1	18605	18605		0	0	1	8860800	+		20933	11493	13323	13381	20105	20105					0.11835902538689425
MAGKKKKL	8	Unmodified	_MAGKKKKL_					0	0	0			REV__SMAD9|p.A424Cfs*2|1|0.07|ENSG00000120693|chr13:36848811-36848812|-/C|frameshift_variant	REV__SMAD9|p.A424Cfs*2|1|0.07|ENSG00000120693|chr13:36848811-36848812|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	452.294048	902.573543	-0.032147	-1.454E-05	2.2661	0.001025	2.234	0.0010104	452.2948313110545	48.794	0.20498	48.794	48.666	48.871	0	0	0	NaN	0	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8860800	+		20934	11493	13323	13381							0.11835902538689425
MALVWLKI	8	Unmodified	_MALVWLKI_					0	0	0			REV__ENST00000425300.6_1_1:55207294-55207468:+|nuORF	REV__ENST00000425300.6_1_1:55207294-55207468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	487.2987976074219	2	487.298799	972.583045	0.21771	0.00010609	-0.32976	-0.00016069	-0.11205	-5.4603E-05	487.2987010550641	49.415	1.4979	49.415	48.819	50.317	0					55	28	2	0	0	0	0.8029	1	18934	18934		11.114	0.93107	1	9455200000	+		20935	15546	13324	13382	20106	20106					0.09565670824201788
MALVWLKI	8	Unmodified	_MALVWLKI_					0	0	0			REV__ENST00000425300.6_1_1:55207294-55207468:+|nuORF	REV__ENST00000425300.6_1_1:55207294-55207468:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	487.298799	972.583045	0.21771	0.00010609	-0.32976	-0.00016069	-0.11205	-5.4603E-05	487.2987010550641	49.415	1.4979	49.415	48.819	50.317	0	-0.097902	-8.32E-05	NaN	11.114	55	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9455200000	+		20936	15546	13324	13382							0.09565670824201788
MAPPSGPT	8	Unmodified	_MAPPSGPT_					0	0	0		ENSG00000130037|ENST00000252321|KCNA5;KCNA5|p.T569Pfs*15|1|0.32|ENSG00000130037|chr12:5045846-5045846|G/-|frameshift_variant;nc|ENSG00000130037|P22460-2|KCNA5	ENSG00000130037|ENST00000252321|KCNA5	ENSG00000130037|ENST00000252321|KCNA5	MSMS	HCT116MG_D190212_S2	2	379.18035888671875	2	379.181089	756.347625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.583	1	58.412	57.912	58.912	-0.1703								0	0	0	0.8837	1	22645	22645		5.2307	2.6532	1				20937	3053	13325	13383	20107	20107					-0.040294663712188594
MAQALQEYNN	10	Unmodified	_MAQALQEYNN_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MSMS	HCT116MG_D190212_S1	1	591.4591064453125	2	591.266413	1180.51827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.397	1	30.397	29.897	30.897	0								0	0	0	0.89062	1	11147	11147		17.113	6.289	1				20938	3997	13326	13384	20108	20108					-0.06476600510382013
MARALCPLQA	10	Unmodified	_MARALCPLQA_					0	0	0		nc|ENSG00000005961|P08514-3|ITGA2B;nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B	nc|ENSG00000005961|P08514-3|ITGA2B	nc|ENSG00000005961|P08514-3|ITGA2B	MULTI-MSMS	HCT116MG_D190212_S3	3	537.2835083007812	2	537.283354	1072.55216	0.47869	0.00025719	-0.51466	-0.00027652	-0.03597	-1.9326E-05	537.2831782361538	33.775	0.20727	33.485	33.356	33.563	-0.29013					5	3	2	0	0	0	0.72678	1	12422	12422		18.146	1.9972	1	3674900			20939	821	13327	13385	20109	20109					0.01878149447634314
MARNYEFLA	9	Unmodified	_MARNYEFLA_					0	0	0		nc|ENSG00000182346|P59103-3|DAOA;ENSG00000182346|ENST00000375936|DAOA	nc|ENSG00000182346|P59103-3|DAOA	nc|ENSG00000182346|P59103-3|DAOA	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.2783813476562	2	557.771134	1113.52771	0.67884	0.00037864	0.91371	0.00050964	1.5926	0.00088828	557.7715582394031	46.608	0.25702	46.497	46.369	46.626	-0.11121					7	4	2	0	0	0	0.20548	1	17776	17776		20.415	4.2654	1	17144000			20940	5667	13328	13386	20110	20110					-0.024507874342134528
MARNYEFLA	9	Unmodified	_MARNYEFLA_					0	0	0		nc|ENSG00000182346|P59103-3|DAOA;ENSG00000182346|ENST00000375936|DAOA	nc|ENSG00000182346|P59103-3|DAOA	nc|ENSG00000182346|P59103-3|DAOA	MULTI-MATCH	HCT116MG_D190212_S4	4		2	557.771134	1113.52771	0.44023	0.00024555	0.25482	0.00014213	0.69505	0.00038768	557.7709748379873	46.933	0.15574	46.563	46.433	46.589	-0.37038	0.032994	-0.0004948	NaN	20.415	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1411600			20941	5667	13328	13386							-0.024507874342134528
MATASSCK	8	Unmodified	_MATASSCK_					0	0	0			REV__ENST00000520356.5_2_8:135490286-135490631:-|nuORF	REV__ENST00000520356.5_2_8:135490286-135490631:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	798.3494262695312	1	798.348436	797.34116	0.96799	0.00077279	0.72843	0.00058154	1.6964	0.0013543	798.3489446361281	55.989	0.3594	55.803	55.587	55.946	-0.18565					11	6	2	0	0	0	0.76189	1	21618	21618		15.847	1.9411	1	9037600	+		20942	16229	13329	13387	20111	20111					-0.06561727594237254
MATTGASL	8	Unmodified	_MATTGASL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MSMS	HCT116MG_D190212_S4	4	376.18646240234375	2	376.186371	750.35819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.3	1	57.004	56.504	57.504	-0.29618								0	0	0	0.8837	1	21504	21504		2.8892	0	1		+		20943	11448	13330	13388	20112	20112					-0.026974837167813348
MAYYNEHLKK	10	Unmodified	_MAYYNEHLKK_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	HCT116MG_D190212_S2	2	432.8852233886719	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.051	1	4.9323	4.4323	5.4323	-0.11871								0	0	0	0.97054	1	1596	1596		0.13989	0	1		+		20944	13036	13331	13389	20113	20113					-0.0027487130862482445
MCACACMCTC	10	Unmodified	_MCACACMCTC_					0	0	0		ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	MSMS	HCT116MG_D190212_S2	2	519.824951171875	2	520.136958	1038.25936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.835	1	60.686	60.186	61.186	-0.14852								0	0	0	0.97116	1	23553	23553		0	0	1				20945	8710	13332	13390	20114	20114					-0.2582369692752309
MCACACMCTC	10	Unmodified	_MCACACMCTC_					0	0	0		ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	MSMS	HCT116MG_D190212_S3	3	520.1980590820312	2	520.136958	1038.25936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.451	1	50.137	49.637	50.637	-0.31419								0	0	0	0.97116	1	19025	19025		0	0	1				20946	8710	13332	13390	20115	20115					-0.2582369692752309
MCACACMCTC	10	Unmodified	_MCACACMCTC_					0	0	0		ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	MSMS	HCT116MG_D190212_S3	3	520.1934814453125	2	520.136958	1038.25936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.775	1	53.476	52.976	53.976	-0.29946								0	0	0	0.97116	1	20361	20361		0	0	1				20947	8710	13332	13390	20116	20116					-0.2582369692752309
MCACACMCTC	10	Unmodified	_MCACACMCTC_					0	0	0		ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	MSMS	HCT116MG_D190212_S4	4	520.13818359375	2	520.136958	1038.25936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.597	1	35.211	34.711	35.711	-0.38606								0	0	0	0.97116	1	13016	13016		0	0	1				20948	8710	13332	13390	20117	20117					-0.2582369692752309
MCACACMCTC	10	Unmodified	_MCACACMCTC_					0	0	0		ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	ENST00000544665.7_1_16:31343047-31343377:+|nuORF	MSMS	HCT116MG_D190212_S4	4	520.0233154296875	2	520.136958	1038.25936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.838	1	50.484	49.984	50.984	-0.35483								0	0	0	0.97116	1	18902	18902		0	0	1				20949	8710	13332	13390	20118	20118					-0.2582369692752309
MCHRAIEQPL	10	Unmodified	_MCHRAIEQPL_					0	0	0			REV__ENSG00000102543|ENST00000251108|CDADC1	REV__ENSG00000102543|ENST00000251108|CDADC1	MULTI-MSMS	HCT116MG_D190212_S3	3	599.2994995117188	2	599.296993	1196.57943	0.58699	0.00035178	-0.11299	-6.7715E-05	0.474	0.00028406	599.2963057497188	28.191	1.5102	27.985	26.875	28.385	-0.20593					54	28	3	0	0	0	0.73913	1	9984	9984		17.113	0	1	7453500	+		20950	11155	13333	13391	20119	20119					-0.01099367011988761
MCMWNLPFLLL	11	Unmodified	_MCMWNLPFLLL_					0	0	0		HEATR5A|p.A970Vfs*19|1|0.07|ENSG00000129493|chr14:31345236-31345237|-/AGCTA|frameshift_variant	HEATR5A|p.A970Vfs*19|1|0.07|ENSG00000129493|chr14:31345236-31345237|-/AGCTA|frameshift_variant	HEATR5A|p.A970Vfs*19|1|0.07|ENSG00000129493|chr14:31345236-31345237|-/AGCTA|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	690.2091674804688	2	690.847473	1379.68039	0.57896	0.00039997	-1.1435	-0.00078995	-0.5645	-0.00038998	690.8460664763625	22.969	0.52333	22.732	22.445	22.968	-0.23758					12	9	2	0	0	0	0.36607	1	8103	8103		0.35063	0	1	1448700			20951	9210	13334	13392	20120	20120					0.005739486465245136
MCPPLPVL	8	Unmodified	_MCPPLPVL_					0	0	0		ENST00000520701.5_1_5:150867854-150868163:+|nuORF	ENST00000520701.5_1_5:150867854-150868163:+|nuORF	ENST00000520701.5_1_5:150867854-150868163:+|nuORF	MSMS	HCT116MG_D190212_S4	4	435.23492431640625	2	435.23481	868.455067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.173	1	10.992	10.492	11.492	-0.18135								0	0	0	0.8837	1	3445	3445		0.79363	0.79363	1				20952	8554	13335	13393	20121	20121					0.015577872386415947
MCSHFDAD	8	Unmodified	_MCSHFDAD_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MSMS	HCT116MG_D190212_S3	3	463.1625061035156	2	463.16257	924.310588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9397	1	4.9622	4.4622	5.4622	0.022513								0	0	0	0.8837	1	1488	1488		0.79363	0	1				20953	6465	13336	13394	20122	20122					-0.15459505979288224
MDCSESDH	8	Unmodified	_MDCSESDH_					0	0	0		nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000520647.5_1_5:153789305-153796529:+|nuORF;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	MSMS	HCT116MG_D190212_S2	2	462.1468505859375	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.466	1	45.373	44.873	45.873	-0.092472								0	0	0	0.8837	1	17291	17291		0.79363	0	1				20954	4702	13337	13395	20123	20123					-0.18456704084189823
MDDDDSYEDD	10	Unmodified	_MDDDDSYEDD_					0	0	0			REV__nc|ENSG00000111530|Q86VP6-3|CAND1	REV__nc|ENSG00000111530|Q86VP6-3|CAND1	MSMS	HCT116MG_D190212_S3	3	610.1844482421875	2	610.182605	1218.35066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.625	1	19.684	19.184	20.184	0.05983								0	0	0	0.96937	1	6740	6740		0.40072	0.050084	1		+		20955	10086	13338	13396	20124	20124					-0.24978377356342207
MDDMDDEDDDD	11	Unmodified	_MDDMDDEDDDD_					0	0	0		nc|ENSG00000118785|P10451-3|SPP1;nc|ENSG00000118785|P10451-5|SPP1;ENSG00000118785|ENST00000395080|SPP1;ENST00000509659.5_1_4:88898870-88904045:+|nuORF	nc|ENSG00000118785|P10451-3|SPP1	nc|ENSG00000118785|P10451-3|SPP1	MSMS	HCT116MG_D190212_S4	4	665.682861328125	2	665.682112	1329.34967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.051	1	54.734	54.234	55.234	-0.31774								0	0	0	0.96208	1	20602	20602		0	0	1				20956	2614	13339	13397	20125	20125					-0.3018295978756669
MDLGTPTY	8	Unmodified	_MDLGTPTY_					0	0	0		ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MSMS	HCT116MG_D190212_S2	2	449.2040100097656	2	449.204761	896.394969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.35	1	50.179	49.679	50.679	-0.1719								0	0	0	0.8837	1	19295	19295		14.582	3.7578	1				20957	5637	13340	13398	20126	20126					-0.05737231890896055
MDMFGMIN	8	Unmodified	_MDMFGMIN_					0	0	0		MLF2|p.M83I|1|0.27|ENSG00000089693|chr12:6750734-6750734|C/T|missense_variant	MLF2|p.M83I|1|0.27|ENSG00000089693|chr12:6750734-6750734|C/T|missense_variant	MLF2|p.M83I|1|0.27|ENSG00000089693|chr12:6750734-6750734|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	479.7751159667969	2	479.695192	957.375831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.909	1	17.553	17.053	18.053	-0.35647								0	0	0	0.8837	1	6124	6124		11.64	0	1				20958	9331	13341	13399	20127	20127					-0.1045622777777453
MDQQFDYDW	9	Unmodified	_MDQQFDYDW_					0	0	0			REV__ENSG00000129757|ENST00000440480|CDKN1C	REV__ENSG00000129757|ENST00000440480|CDKN1C	MSMS	HCT116MG_D190212_S3	3	624.2366333007812	2	624.237321	1246.46009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.468	1	54.172	53.672	54.672	-0.29587								0	0	0	0.77008	1	20639	20639		0.6015	0	1		+		20959	11900	13342	13400	20128	20128					-0.15328282155701345
MDSNDDMK	8	Unmodified	_MDSNDDMK_					0	0	0		LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;ENST00000492844.1_1_1:235950498-235952065:-|nuORF	LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant	LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	478.17828369140625	2	478.178417	954.342282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3339	1	5.3339	4.8339	5.8339	0								0	0	0	0.8837	1	1607	1607		0.69038	0.69038	1				20960	3827	13343	13401	20129	20129					-0.13671558015994378
MDTAQFCMQY	10	Unmodified	_MDTAQFCMQY_					0	0	0		PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant	PTPRT|p.S1349Pfs*31|1|0.6|ENSG00000196090|chr20:42084774-42084774|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	619.2396850585938	2	619.237952	1236.46135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.571	1	43.197	42.697	43.697	-0.37433								0	0	0	0.90475	1	16020	16020		14.838	1.7958	1				20961	6042	13344	13402	20130	20130					-0.14742107382789982
MDVKKKELP	9	Unmodified	_MDVKKKELP_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-1|RNF17	REV__nc|ENSG00000132972|Q9BXT8-1|RNF17	MSMS	HCT116MG_D190212_S3	3	363.2123107910156	3	363.210849	1086.61072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.352	1	22.353	21.853	22.853	0.00074577								0	0	0	0.7689	1	7837	7837		2.7352	0.82882	1		+		20962	12012	13345	13403	20131	20131					0.07087529293767147
MDYKYLRWQ	9	Unmodified	_MDYKYLRWQ_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MSMS	HCT116MG_D190212_S3	3	434.882568359375	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6374	1	3.6738	3.1738	4.1738	0.036387								0	0	0	0.7701	1	1098	1098		0.23584	0	1				20963	2137	13346	13404	20132	20132					-0.016068539630396117
MEAADYREA	9	Unmodified	_MEAADYREA_					0	0	0		ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	528.227294921875	2	528.226756	1054.43896	0.52697	0.00027836	0.44533	0.00023523	0.9723	0.00051359	528.2271249614665	24.499	0.20892	24.119	24.03	24.239	-0.38003					5	3	2	0	0	0	0.27446	1	8807	8807		33.445	18.607	1	10155000			20964	1459	13347	13405	20133	20133					-0.08608247464553642
MEAADYREA	9	Unmodified	_MEAADYREA_					0	0	0		ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	ENST00000393747.3_1_11:70269077-70281851:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	528.22705078125	2	528.226756	1054.43896	0.29107	0.00015375	0.40849	0.00021578	0.69956	0.00036953	528.2270344629699	24.243	0.26008	24.181	23.999	24.259	-0.061449					6	4	2	0	0	0	0.1535	1	8602	8602		47.594	27.141	1	8672600			20965	1459	13347	13405	20134	20134					-0.08608247464553642
MEAEHLFRSP	10	Unmodified	_MEAEHLFRSP_					0	0	0		ENST00000347140.7_1_12:57704239-57789554:-|nuORF	ENST00000347140.7_1_12:57704239-57789554:-|nuORF	ENST00000347140.7_1_12:57704239-57789554:-|nuORF	MSMS	HCT116MG_D190212_S1	1	608.7927856445312	2	608.792598	1215.57064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.437	1	36.437	35.937	36.937	0								0	0	0	0.81221	1	13583	13583		27.223	15.583	1				20966	7267	13348	13406	20135	20135					-0.028520173767901724
MEAEHLFRSP	10	Unmodified	_MEAEHLFRSP_					0	0	0		ENST00000347140.7_1_12:57704239-57789554:-|nuORF	ENST00000347140.7_1_12:57704239-57789554:-|nuORF	ENST00000347140.7_1_12:57704239-57789554:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	608.79248046875	2	608.792598	1215.57064	0.75371	0.00045885	-0.38542	-0.00023464	0.36829	0.00022421	608.7924097133305	36.387	0.31066	36.259	36.071	36.382	-0.12799					13	5	3	0	0	0	0.024602	1	13632	13632		112.04	79.255	1	16228000			20967	7267	13348	13406	20136	20136					-0.028520173767901724
MEAERPQE	8	Unmodified	_MEAERPQE_					0	0	0		ENST00000487761.5_1_6:32160013-32160290:-|nuORF;ENSG00000213654|ENST00000375040|GPSM3	ENST00000487761.5_1_6:32160013-32160290:-|nuORF	ENST00000487761.5_1_6:32160013-32160290:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	495.2213134765625	2	495.221474	988.428395	0.35207	0.00017435	-0.086823	-4.2996E-05	0.26525	0.00013136	495.22130277057653	21.62	0.31274	21.62	21.385	21.698	0					7	5	2	0	0	0	0.44484	1	7616	7616		46.021	4.0654	1	10513000			20968	6417	13349	13407	20137	20137					-0.06628230118974443
MEAERPQE	8	Unmodified	_MEAERPQE_					0	0	0		ENST00000487761.5_1_6:32160013-32160290:-|nuORF;ENSG00000213654|ENST00000375040|GPSM3	ENST00000487761.5_1_6:32160013-32160290:-|nuORF	ENST00000487761.5_1_6:32160013-32160290:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	495.2215881347656	2	495.221474	988.428395	0.26794	0.00013269	-0.10769	-5.3333E-05	0.16024	7.9356E-05	495.22134478868566	21.994	0.41697	21.609	21.427	21.844	-0.38503					9	7	2	0	0	0	0.53596	1	7772	7772		37.974	3.0419	1	63705000			20969	6417	13349	13407	20138	20138					-0.06628230118974443
MEAERPQE	8	Unmodified	_MEAERPQE_					0	0	0		ENST00000487761.5_1_6:32160013-32160290:-|nuORF;ENSG00000213654|ENST00000375040|GPSM3	ENST00000487761.5_1_6:32160013-32160290:-|nuORF	ENST00000487761.5_1_6:32160013-32160290:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	495.22137451171875	2	495.221474	988.428395	0.24481	0.00012123	-1.3421	-0.00066464	-1.0973	-0.00054341	495.22061417531177	21.511	0.7348	21.529	21.377	22.112	0.018446					18	13	2	0	0	0	0.51336	1	7513	7513		39.957	5.5556	1	6097300			20970	6417	13349	13407	20139	20139					-0.06628230118974443
MEAIEVKREW	10	Unmodified	_MEAIEVKREW_					0	0	0			REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	MSMS	HCT116MG_D190212_S1	1	430.88787841796875	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.69	1	63.69	63.19	64.19	0								0	0	0	0.97045	1	24602	24602		0.15932	0	1		+		20971	11173	13350	13408	20140	20140					0.010571113458127002
MEAIPVKQF	9	Unmodified	_MEAIPVKQF_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.E1273*|1|0.29|ENSG00000144724|chr3:62281605-62281606|-/TGAACTGT|frameshift_variant;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant;ENST00000475012.5_1_3:62203523-62278979:+|nuORF;PTPRG|p.A885Efs*11|1|0.09|ENSG00000144724|chr3:62262891-62262892|-/AAACAAAGGAA|frameshift_variant;ENST00000468576.1_1_3:62229532-62248574:+|nuORF	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MSMS	HCT116MG_D190212_S2	2	531.78515625	2	531.786253	1061.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.305	1	42.237	41.737	42.737	-0.068199								0	0	0	0.76603	1	16010	16010		14.838	0	1				20972	3879	13351	13409	20141	20141					0.029635712309755036
MEALPLLAA	9	Unmodified	_MEALPLLAA_					0	0	0		ENST00000495599.1_1_X:23685681-23689545:+|nuORF;ENSG00000123131|ENST00000379341|PRDX4	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	928.51806640625	1	928.517216	927.50994	1.0524	0.00097715	-0.34054	-0.0003162	0.71183	0.00066095	928.516757602046	57.464	0.31104	57.289	57.107	57.418	-0.17494					12	5	3	0	0	0	0.031005	1	22201	22201		85.357	21.794	1	29685000			20973	2790	13352	13410	20142	20142					0.043284973109280145
MEALPLLAA	9	Unmodified	_MEALPLLAA_					0	0	0		ENST00000495599.1_1_X:23685681-23689545:+|nuORF;ENSG00000123131|ENST00000379341|PRDX4	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	928.517822265625	1	928.517216	927.50994	1.1623	0.0010792	-0.036542	-3.393E-05	1.1257	0.0010452	928.516950661562	57.553	0.31296	57.278	57.099	57.412	-0.27434					10	5	3	0	0	0	0.1037	1	21880	21880		57.471	17.023	1	5645300			20974	2790	13352	13410	20143	20143					0.043284973109280145
MEALPLLAA	9	Unmodified	_MEALPLLAA_					0	0	0		ENST00000495599.1_1_X:23685681-23689545:+|nuORF;ENSG00000123131|ENST00000379341|PRDX4	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	ENST00000495599.1_1_X:23685681-23689545:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	928.5184326171875	1	928.517216	927.50994	0.9399	0.00087271	0.60083	0.00055788	1.5407	0.0014306	928.5176898772104	57.522	0.2081	57.227	57.097	57.305	-0.29465					6	3	2	0	0	0	0.2853	1	21620	21620		32.305	4.1323	1	2355500			20975	2790	13352	13410	20144	20144					0.043284973109280145
MEAPAAGLF	9	Unmodified	_MEAPAAGLF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	HCT116MG_D190212_S1	1	906.4395751953125	1	906.438966	905.431689	0.88939	0.00080618	0.11769	0.00010668	1.0071	0.00091286	906.4392630714865	54.187	0.20536	54.187	54.026	54.231	0					5	3	2	0	0	0	0.031005	1	20788	20788		85.357	29.308	1	18577000			20976	4645	13353	13411	20145	20145					-0.024809352743204727
MEAPAAGLF	9	Unmodified	_MEAPAAGLF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	HCT116MG_D190212_S2	2	906.439697265625	1	906.438966	905.431689	0.72975	0.00066148	-0.035132	-3.1845E-05	0.69462	0.00062963	906.4389634560824	54.416	0.35705	54.227	54.048	54.405	-0.1894					14	6	3	0	0	0	0.031005	1	20950	20950		85.357	29.308	1	143160000			20977	4645	13353	13411	20146	20146					-0.024809352743204727
MEAPAAGLF	9	Unmodified	_MEAPAAGLF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	HCT116MG_D190212_S3	3	906.4388427734375	1	906.438966	905.431689	0.62907	0.00057021	-0.045608	-4.1341E-05	0.58346	0.00052887	906.4387626053947	54.565	0.31381	54.269	54.138	54.452	-0.29587					12	5	3	0	0	0	0.031005	1	20683	20683		85.357	29.308	1	19845000			20978	4645	13353	13411	20147	20147					-0.024809352743204727
MEAPAAGLF	9	Unmodified	_MEAPAAGLF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	HCT116MG_D190212_S4	4	906.4398803710938	1	906.438966	905.431689	0.79682	0.00072227	0.51672	0.00046838	1.3135	0.0011906	906.4393217639167	54.579	0.20837	54.256	54.14	54.348	-0.32348					5	3	2	0	0	0	0.16144	1	20444	20444		46.021	17.848	1	3022500			20979	4645	13353	13411	20148	20148					-0.024809352743204727
MEAPHIIVG	9	Unmodified	_MEAPHIIVG_					0	0	0		ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000583899.5_1_17:7477924-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	483.7576904296875	2	483.757495	965.500437	0.18015	8.7151E-05	0.44424	0.0002149	0.62439	0.00030205	483.75769866110585	42.058	0.31204	41.99	41.808	42.12	-0.068199					9	5	2	0	0	0	0.1037	1	15939	15939		57.471	25.166	1	19194000			20980	4501	13354	13412	20149	20149					0.01630729025407618
MEAPHIIVG	9	Unmodified	_MEAPHIIVG_					0	0	0		ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000583899.5_1_17:7477924-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENST00000581544.5_1_17:7477924-7481249:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	483.757495	965.500437	0.23366	0.00011304	1.0398	0.00050299	1.2734	0.00061602	483.7581383331409	42.045	0.15684	42.045	41.914	42.071	0	0.027469	0.00054995	NaN	57.471	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3499500			20981	4501	13354	13412							0.01630729025407618
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	HCT116MG_D190212_S1	1	577.75732421875	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.615	1	14.615	14.115	15.115	0								0	0	0	0.97116	1	4797	4797		0	0	1				20982	5153	13355	13413	20150	20150					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	HCT116MG_D190212_S1	1	577.7837524414062	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.435	1	16.435	15.935	16.935	0								0	0	0	0.97116	1	5531	5531		0	0	1				20983	5153	13355	13413	20151	20151					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	HCT116MG_D190212_S1	1	578.5579833984375	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.047	1	18.047	17.547	18.547	0								0	0	0	0.97116	1	6180	6180		0	0	1				20984	5153	13355	13413	20152	20152					-0.33701216240615395
MECCCCCCEE	10	Unmodified	_MECCCCCCEE_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MSMS	HCT116MG_D190212_S3	3	577.8140869140625	2	578.124244	1154.23394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.343	1	56.06	55.56	56.56	-0.28367								0	0	0	0.97116	1	21388	21388		0	0	1				20985	5153	13355	13413	20153	20153					-0.33701216240615395
MEDAKVYVA	9	Unmodified	_MEDAKVYVA_					0	0	0		ENSG00000239264|ENST00000379757|TXNDC5;nc|ENSG00000239264|Q8NBS9-2|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	MULTI-MSMS	HCT116MG_D190212_S3	3	513.2523193359375	2	513.252243	1024.48993	0.11054	5.6737E-05	0.12198	6.2607E-05	0.23253	0.00011934	513.2521928823456	31.155	0.47007	30.894	30.709	31.179	-0.26071					12	8	3	0	0	0	0.068828	1	11393	11393		65.474	28.967	1	11092000			20986	6533	13356	13414	20154	20154					-0.021332984196760663
MEDAKVYVA	9	Unmodified	_MEDAKVYVA_					0	0	0		ENSG00000239264|ENST00000379757|TXNDC5;nc|ENSG00000239264|Q8NBS9-2|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	MULTI-MSMS	HCT116MG_D190212_S4	4	513.2523803710938	2	513.252243	1024.48993	0.16414	8.4244E-05	-0.046908	-2.4075E-05	0.11723	6.0169E-05	513.2521184367195	31.299	0.25854	30.929	30.765	31.023	-0.37026					8	4	2	0	0	0	0.068828	1	11363	11363		65.474	28.967	1	3688100			20987	6533	13356	13414	20155	20155					-0.021332984196760663
MEDDDMDY	8	Unmodified	_MEDDDMDY_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1597900390625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7542	1	1.741	1.241	2.241	-0.013221								0	0	0	0.8837	1	571	571		0.79363	0.79363	1		+		20988	11572	13357	13415	20156	20156					-0.20963274352425287
MEDDKVAEA	9	Unmodified	_MEDDKVAEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S2	2	504.2209777832031	2	504.221139	1006.42773	0.34994	0.00017645	-0.24611	-0.0001241	0.10383	5.2353E-05	504.2208181219859	21.767	0.15601	21.382	21.271	21.427	-0.38503					4	2	2	0	0	0	0.26031	1	7695	7695		34.932	9.5328	1	5533900			20989	2741	13358	13416	20157	20157					-0.07523069558692441
MEDDKVAEA	9	Unmodified	_MEDDKVAEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S3	3	504.22119140625	2	504.221139	1006.42773	0.24707	0.00012458	-0.056326	-2.8401E-05	0.19074	9.6176E-05	504.22111350162004	21.278	0.36622	21.297	21.011	21.377	0.018446					12	6	3	0	0	0	0.095731	1	7411	7411		59.052	24.651	1	11895000			20990	2741	13358	13416	20158	20158					-0.07523069558692441
MEDDKVAEA	9	Unmodified	_MEDDKVAEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S4	4	504.2214660644531	2	504.221139	1006.42773	0.29999	0.00015126	-0.55732	-0.00028101	-0.25733	-0.00012975	504.2208367930045	21.503	0.20765	21.284	21.166	21.374	-0.21832					5	3	2	0	0	0	0.31258	1	7445	7445		29.437	5.4166	1	2201000			20991	2741	13358	13416	20159	20159					-0.07523069558692441
MEDHSHSF	8	Unmodified	_MEDHSHSF_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	HCT116MG_D190212_S2	2	495.1925964355469	2	495.192716	988.37088	0.2323	0.00011503	-0.13139	-6.5061E-05	0.10091	4.997E-05	495.19249236030737	21.63	0.25964	21.245	21.115	21.375	-0.38503					7	4	2	0	0	0	0.060005	1	7642	7642		112.59	74.442	1	6322300			20992	3170	13359	13417	20160	20160					-0.12377072324545679
MEDIKILIA	9	Oxidation (M)	_M(Oxidation (M))EDIKILIA_		M(1)EDIKILIA		M(74)EDIKILIA	0	0	1		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	HCT116MG_D190212_S1	1	531.2991943359375	2	531.299193	1060.58383	0.11366	6.0385E-05	0.050854	2.7019E-05	0.16451	8.7404E-05	531.2991474079886	48.157	0.20683	48.157	47.996	48.203	0					6	3	2	0	0	0	0.051033	1	18330	18330		74.2	41.894	1	19419000			20993	1722	13360	13418	20161	20161		30			0.05596420682581993
MEDIKILIA	9	Oxidation (M)	_M(Oxidation (M))EDIKILIA_		M(1)EDIKILIA		M(50)EDIKILIA	0	0	1		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	HCT116MG_D190212_S3	3	531.2992553710938	2	531.299193	1060.58383	0.69825	0.00037098	0.031593	1.6785E-05	0.72984	0.00038777	531.2991175308821	48.499	0.26019	48.183	47.984	48.244	-0.31596					7	4	2	0	0	0	0.14362	1	18262	18262		49.554	21.925	1	9709400			20994	1722	13360	13418	20162	20162		30			0.05596420682581993
MEDIKILIA	9	Oxidation (M)	_M(Oxidation (M))EDIKILIA_		M(1)EDIKILIA		M(74)EDIKILIA	0	0	1		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	HCT116MG_D190212_S4	4	531.2996826171875	2	531.299193	1060.58383	0.34553	0.00018358	0.041323	2.1955E-05	0.38685	0.00020553	531.2990630256373	48.528	0.30103	48.161	47.987	48.288	-0.36728					12	7	2	0	0	0	0.051033	1	17962	17962		74.2	25.854	1	15437000			20995	1722	13360	13418	20163	20163		30			0.05596420682581993
MEDIKILIA	9	Unmodified	_MEDIKILIA_					0	0	0		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	HCT116MG_D190212_S2	2	523.3024291992188	2	523.301736	1044.58892	0.61533	0.000322	-0.033192	-1.7369E-05	0.58214	0.00030463	523.3017777094751	52.148	0.56709	51.96	51.728	52.295	-0.18725					21	10	4	0	0	0	0.068828	1	20005	20005		65.474	27.5	1	138970000			20996	1722	13360	13419	20164	20164					0.06840724545213561
MEDIKILIA	9	Unmodified	_MEDIKILIA_					0	0	0		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	HCT116MG_D190212_S3	3	523.3018798828125	2	523.301736	1044.58892	0.38078	0.00019926	0.35336	0.00018491	0.73414	0.00038417	523.3018462781685	52.371	0.4706	52.064	51.882	52.352	-0.30639					19	8	4	0	0	0	0.032914	1	19797	19797		83.429	39.57	1	35291000			20997	1722	13360	13419	20165	20165					0.06840724545213561
MEDIKILIA	9	Unmodified	_MEDIKILIA_					0	0	0		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	HCT116MG_D190212_S4	4	523.3018188476562	2	523.301736	1044.58892	0.36977	0.0001935	0.22049	0.00011538	0.59026	0.00030889	523.3018106172259	52.407	0.36457	52.067	51.884	52.249	-0.34023					12	6	3	0	0	0	0.068828	1	19537	19537		65.474	23.634	1	19004000			20998	1722	13360	13419	20166	20166					0.06840724545213561
MEDKTEKWS	9	Unmodified	_MEDKTEKWS_					0	0	0		AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2	AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	AHNAK2|p.E5446Gfs*7|1|0.32|ENSG00000185567|chr14:104939114-104939115|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	577.6597290039062	2	577.263339	1152.51212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.667	1	46.352	45.852	46.852	-0.31405								0	0	0	0.76834	1	17504	17504		6.7232	0	1				20999	83	13361	13420	20167	20167					-0.058031187419373964
MEDLIHEIY	9	Unmodified	_MEDLIHEIY_					0	0	0		ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENSG00000147604|ENST00000352983|RPL7	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	582.308837890625	2	581.776082	1161.53761	0.40564	0.00023599	-0.33149	-0.00019285	0.074149	4.3138E-05	581.7758994332651	51.276	0.25739	51.276	51.143	51.4	0					9	4	3	0	0	0	0.0057285	2	19578	19578;19602		131.27	93.092	1	52051000			21000	3994	13362	13421	20168;20169	20168					-0.036696442195079726
MEDLIHEIY	9	Unmodified	_MEDLIHEIY_					0	0	0		ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENSG00000147604|ENST00000352983|RPL7	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	581.77587890625	2	581.776082	1161.53761	0.47275	0.00027504	-0.2536	-0.00014754	0.21915	0.00012749	581.77584814528	51.531	0.36042	51.347	51.166	51.527	-0.18369					14	6	3	0	0	0	0.0057285	1	19778	19778		131.27	99.999	1	118490000			21001	3994	13362	13421	20170	20170					-0.036696442195079726
MEDLIHEIY	9	Unmodified	_MEDLIHEIY_					0	0	0		ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENSG00000147604|ENST00000352983|RPL7	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	581.7761840820312	2	581.776082	1161.53761	0.41848	0.00024346	-0.019799	-1.1518E-05	0.39868	0.00023194	581.7758868952558	51.667	0.36658	51.356	51.172	51.539	-0.31166					14	6	4	0	0	0	0.010834	2	19514	19514;19586		111.29	76.885	1	24260000			21002	3994	13362	13421	20171;20172	20171					-0.036696442195079726
MEDLIHEIY	9	Oxidation (M)	_M(Oxidation (M))EDLIHEIY_		M(1)EDLIHEIY		M(46)EDLIHEIY	0	0	1		ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENSG00000147604|ENST00000352983|RPL7	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	589.773681640625	2	589.773539	1177.53253	0.83215	0.00049078	-0.70082	-0.00041333	0.13133	7.7456E-05	589.7732688162042	47.556	0.20654	47.43	47.28	47.487	-0.12614					6	3	2	0	0	0	0.16306	1	18163	18163		45.7	28.587	1	11385000			21003	3994	13362	13422	20173	20173		91			-0.049139480821168036
MEDLIHEIY	9	Oxidation (M)	_M(Oxidation (M))EDLIHEIY_		M(1)EDLIHEIY		M(100)EDLIHEIY	0	0	1		ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENSG00000147604|ENST00000352983|RPL7	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	589.7737426757812	2	589.773539	1177.53253	0.29664	0.00017495	0.42248	0.00024917	0.71912	0.00042412	589.7736494939899	47.752	0.25954	47.437	47.308	47.567	-0.31525					7	4	2	0	0	0	0.016701	1	17967	17967		99.799	69.162	1	8029000			21004	3994	13362	13422	20174	20174		91			-0.049139480821168036
MEDLIHEIY	9	Oxidation (M)	_M(Oxidation (M))EDLIHEIY_		M(1)EDLIHEIY		M(89)EDLIHEIY	0	0	1		ENST00000481157.1_1_12:65261855-65261975:-|nuORF;ENST00000461513.1_1_17:49579856-49580498:-|nuORF;ENSG00000147604|ENST00000352983|RPL7	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	ENST00000481157.1_1_12:65261855-65261975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	589.7740478515625	2	589.773539	1177.53253	0.72608	0.00042822	-0.1403	-8.2747E-05	0.58577	0.00034547	589.7736867977446	47.747	0.21188	47.378	47.256	47.468	-0.36907					12	5	3	0	0	0	0.027442	1	17674	17674		88.954	62.686	1	7844600			21005	3994	13362	13422	20175	20175		91			-0.049139480821168036
MEDSTYYKA	9	Unmodified	_MEDSTYYKA_					0	0	0		ENST00000520917.1_1_8:141745348-141753407:-|nuORF;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;PTK2|p.P912Lfs*17|2|0.43|ENSG00000169398|chr8:140668399-140668399|G/-|frameshift_variant;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2	ENST00000520917.1_1_8:141745348-141753407:-|nuORF	ENST00000520917.1_1_8:141745348-141753407:-|nuORF	MSMS	HCT116MG_D190212_S4	4	554.2373657226562	2	554.23679	1106.45903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.856	1	26.545	26.045	27.045	-0.3114								0	0	0	0.76699	1	9587	9587		11.495	0	1				21006	5070	13363	13423	20176	20176					-0.08994496524587703
MEEEEEDDDYE	11	Unmodified	_MEEEEEDDDYE_					0	0	0		nc|ENSG00000187912|Q6ZS10-2|CLEC17A;nc|ENSG00000187912|Q6ZS10-3|CLEC17A;ENSG00000187912|ENST00000417570|CLEC17A	nc|ENSG00000187912|Q6ZS10-2|CLEC17A	nc|ENSG00000187912|Q6ZS10-2|CLEC17A	MSMS	HCT116MG_D190212_S2	2	716.73095703125	2	716.732659	1431.45077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.103	1	32.891	32.391	33.391	-0.21135								0	0	0	0.96157	1	12271	12271		0.26902	0.26902	1				21007	5962	13364	13424	20177	20177					-0.24770184813155538
MEEEEEEDAFP	11	Unmodified	_MEEEEEEDAFP_					0	0	0			REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	REV__ZFC3H1|p.L1693Ffs*10|1|0.1|ENSG00000133858|chr12:71619380-71619381|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	677.947509765625	2	677.753198	1353.49184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.062	1	48.062	47.562	48.562	0								0	0	0	0.95581	1	18278	18278		3.2813	1.7994	1		+		21008	12038	13365	13425	20178	20178					-0.17076378983051654
MEEIYNLYS	9	Unmodified	_MEEIYNLYS_					0	0	0		CCDC160|p.S51Y|1|0.3|ENSG00000203952|chrX:134244952-134244952|C/A|missense_variant	CCDC160|p.S51Y|1|0.3|ENSG00000203952|chrX:134244952-134244952|C/A|missense_variant	CCDC160|p.S51Y|1|0.3|ENSG00000203952|chrX:134244952-134244952|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	581.2603149414062	2	581.260265	1160.50598	0.083472	4.8519E-05	0.26266	0.00015267	0.34613	0.00020119	581.2604471122534	36.212	0.46769	35.912	35.626	36.093	-0.30042					19	8	3	0	0	0	0.43775	1	13344	13344		20.454	0	1	32955000			21009	344	13366	13426	20179	20179					-0.06785636973427245
MEEKYIVSA	9	Unmodified	_MEEKYIVSA_					0	0	0		ENSG00000168172|ENST00000307602|HOOK3	ENSG00000168172|ENST00000307602|HOOK3	ENSG00000168172|ENST00000307602|HOOK3	MSMS	HCT116MG_D190212_S3	3	535.2653198242188	2	535.26535	1068.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.591	1	34.294	33.794	34.794	-0.29707								0	0	0	0.69431	1	12738	12738		19.362	9.288	1				21010	4988	13367	13427	20180	20180					-0.015370292482202785
MEELHNQEV	9	Unmodified	_MEELHNQEV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;ENST00000473525.1_1_X:70516758-70517827:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S2	2	564.7536010742188	2	564.753138	1127.49172	0.4573	0.00025826	-0.86879	-0.00049065	-0.4115	-0.00023239	564.753215033032	27.971	0.25798	27.629	27.5	27.758	-0.34201					7	4	2	0	0	0	0.056114	1	10216	10216		71.708	31.751	1	14997000			21011	3974	13368	13428	20181	20181					-0.06692289401735252
MEELHNQEV	9	Unmodified	_MEELHNQEV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;ENST00000473525.1_1_X:70516758-70517827:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S3	3	564.7535400390625	2	564.753138	1127.49172	0.45841	0.00025889	-0.19427	-0.00010971	0.26414	0.00014917	564.7529850860534	27.897	0.31206	27.708	27.569	27.881	-0.18847					11	5	3	0	0	0	0.011132	1	10077	10077		110.55	66.694	1	9757300			21012	3974	13368	13428	20182	20182					-0.06692289401735252
MEELHNQEV	9	Unmodified	_MEELHNQEV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;ENST00000473525.1_1_X:70516758-70517827:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S4	4	564.753173828125	2	564.753138	1127.49172	0.33987	0.00019194	-0.75701	-0.00042753	-0.41714	-0.00023558	565.2539901390542	28.057	0.25985	27.726	27.596	27.856	-0.33138					7	4	2	0	0	0	0.068828	1	10092	10092		65.474	29.347	1	3974900			21013	3974	13368	13428	20183	20183					-0.06692289401735252
MEELRHHFRIE	11	Unmodified	_MEELRHHFRIE_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MSMS	HCT116MG_D190212_S2	2	748.8743286132812	2	748.874985	1495.73542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.654	1	42.584	42.084	43.084	-0.069984								0	0	0	0.95196	1	16150	16150		5.2969	1.1074	1				21014	1152	13369	13429	20184	20184					0.007377947630175186
MEEMYKKAHAA	11	Unmodified	_MEEMYKKAHAA_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000438138.1_1_10:71539408-71539444:+|nuORF;ENST00000457507.1_1_1:99473841-99474009:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	HCT116MG_D190212_S2	2	654.807861328125	2	654.80739	1307.60023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.245	1	19.866	19.366	20.366	-0.37949								0	0	0	0.0010432	1	7066	7066		100.71	67.923	1				21015	2762	13370	13430	20185	20185					-0.0412682142293761
MEEMYKKAHAA	11	Unmodified	_MEEMYKKAHAA_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000438138.1_1_10:71539408-71539444:+|nuORF;ENST00000457507.1_1_1:99473841-99474009:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	HCT116MG_D190212_S2	2	436.8737487792969	3	436.874019	1307.60023	-0.039497	-1.7255E-05	-0.22222	-9.708E-05	-0.26171	-0.00011434	436.8737588556634	20.187	0.20872	19.811	19.711	19.92	-0.37686					5	3	2	0	0	0	0.32895	1	7067	7067		38.559	24.341	1	10607000			21016	2762	13370	13430	20186	20186					-0.0412682142293761
MEEMYKKAHAA	11	Unmodified	_MEEMYKKAHAA_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000438138.1_1_10:71539408-71539444:+|nuORF;ENST00000457507.1_1_1:99473841-99474009:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	HCT116MG_D190212_S3	3	436.87408447265625	3	436.874019	1307.60023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.2	1	19.269	18.769	19.769	0.068298								0	0	0	0.33773	1	6569	6569		44.945	24.074	1				21017	2762	13370	13430	20187	20187					-0.0412682142293761
MEEMYKKAHAA	11	Unmodified	_MEEMYKKAHAA_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000438138.1_1_10:71539408-71539444:+|nuORF;ENST00000457507.1_1_1:99473841-99474009:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	HCT116MG_D190212_S4	4	436.8739318847656	3	436.874019	1307.60023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.64	1	19.446	18.946	19.946	-0.19367								0	0	0	0.40653	1	6674	6674		35.08	24.181	1				21018	2762	13370	13430	20188	20188					-0.0412682142293761
MEEQVTKAEA	10	Unmodified	_MEEQVTKAEA_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	HCT116MG_D190212_S2	2	568.268798828125	2	568.268621	1134.52269	0.58422	0.00033199	0.0085021	4.8315E-06	0.59272	0.00033682	568.268272191335	22.376	0.15536	21.991	21.895	22.051	-0.3852					4	2	2	0	0	0	0.10753	1	7945	7945		72.59	33.975	1	7965600			21019	5875	13371	13431	20189	20189					-0.03919136087483821
MEEQVTKAEA	10	Unmodified	_MEEQVTKAEA_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	HCT116MG_D190212_S3	3	568.26904296875	2	568.268621	1134.52269	0.43685	0.00024825	0.18612	0.00010577	0.62296	0.00035401	568.2688470248272	21.963	0.41659	21.964	21.729	22.146	0.00074577					11	7	2	0	0	0	0.036414	1	7685	7685		97.284	43.88	1	12768000			21020	5875	13371	13431	20190	20190					-0.03919136087483821
MEEQVTKAEA	10	Unmodified	_MEEQVTKAEA_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	HCT116MG_D190212_S4	4	568.7717895507812	2	568.268621	1134.52269	0.49685	0.00028234	0.59089	0.00033578	1.0877	0.00061813	568.2687625193778	22.189	0.20772	21.962	21.832	22.039	-0.22777					5	3	2	0	0	0	0.041584	1	7714	7714		93.448	47.708	1	4829000			21021	5875	13371	13431	20191	20191					-0.03919136087483821
MEERAQLEA	9	Unmodified	_MEERAQLEA_					0	0	0		nc|ENSG00000167110|Q08379|GOLGA2;GOLGA2|p.Y989Lfs*4|1|0.29|ENSG00000167110|chr9:128257110-128257111|-/A|frameshift_variant;GOLGA2|p.Y989Tfs*9|1|0.35|ENSG00000167110|chr9:128257111-128257111|A/-|frameshift_variant;ENSG00000167110|ENST00000611957|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	MULTI-MSMS	HCT116MG_D190212_S3	3	538.7554931640625	2	538.755681	1075.49681	0.51305	0.00027641	-0.1301	-7.0093E-05	0.38295	0.00020631	538.755520797691	26.898	0.26058	26.729	26.651	26.912	-0.16933					6	4	2	0	0	0	0.31258	1	9704	9704		29.437	16.565	1	3567500			21022	4906	13372	13432	20192	20192					-0.037919855391237434
MEERAQLEA	9	Unmodified	_MEERAQLEA_					0	0	0		nc|ENSG00000167110|Q08379|GOLGA2;GOLGA2|p.Y989Lfs*4|1|0.29|ENSG00000167110|chr9:128257110-128257111|-/A|frameshift_variant;GOLGA2|p.Y989Tfs*9|1|0.35|ENSG00000167110|chr9:128257111-128257111|A/-|frameshift_variant;ENSG00000167110|ENST00000611957|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	nc|ENSG00000167110|Q08379|GOLGA2	MULTI-SECPEP	HCT116MG_D190212_S4	4	538.7565307617188	2	538.755681	1075.49681	0.48455	0.00026106	0.87393	0.00047084	1.3585	0.00073189	538.7561507519603	27.118	0.20808	26.807	26.69	26.899	-0.3114					5	3	2	0	0	0	0.25734	1	9716	9716		14.405	5.66	1	1042200			21023	4906	13372	13432	20193	20193					-0.037919855391237434
MEGGHFVPP	9	Unmodified	_MEGGHFVPP_					0	0	0		nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF;ENSG00000149115|ENST00000358252|TNKS1BP1	nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	MULTI-MSMS	HCT116MG_D190212_S2	2	485.7262878417969	2	485.726195	969.437837	0.29325	0.00014244	-0.19366	-9.4065E-05	0.099595	4.8376E-05	485.72613537228847	34.929	0.72441	34.771	34.399	35.123	-0.15834					22	13	2	0	0	0	0.19218	1	12963	12963		42.095	15.753	1	16379000			21024	4041	13373	13433	20194	20194					-0.048104170427905046
MEGKVPVAA	9	Unmodified	_MEGKVPVAA_					0	0	0		ENST00000265260.7_1_3:101298672-101298792:+|nuORF	ENST00000265260.7_1_3:101298672-101298792:+|nuORF	ENST00000265260.7_1_3:101298672-101298792:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	451.2441101074219	2	451.244221	900.473888	0.41164	0.00018575	-0.48848	-0.00022042	-0.076841	-3.4674E-05	451.24404511063705	27.455	0.25751	27.113	26.933	27.191	-0.34201					7	4	2	0	0	0	0.05892	1	9981	9981		70.332	38.215	1	17122000			21025	6900	13374	13434	20195	20195					0.019670401340590615
MEGKVPVAA	9	Unmodified	_MEGKVPVAA_					0	0	0		ENST00000265260.7_1_3:101298672-101298792:+|nuORF	ENST00000265260.7_1_3:101298672-101298792:+|nuORF	ENST00000265260.7_1_3:101298672-101298792:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	451.244221	900.473888	0.054211	2.4462E-05	-0.095058	-4.2894E-05	-0.040847	-1.8432E-05	451.244343675971	27.035	0.20782	27.035	26.918	27.125	0	-0.058897	0.00028979	NaN	70.332	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3497500			21026	6900	13374	13434							0.019670401340590615
MEGKVPVAA	9	Unmodified	_MEGKVPVAA_					0	0	0		ENST00000265260.7_1_3:101298672-101298792:+|nuORF	ENST00000265260.7_1_3:101298672-101298792:+|nuORF	ENST00000265260.7_1_3:101298672-101298792:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	451.244221	900.473888	0.16927	7.638E-05	-0.45104	-0.00020353	-0.28178	-0.00012715	451.2441490834612	27.303	0.15608	27.133	27.016	27.172	-0.16933	0.039369	-3.1484E-05	NaN	70.332	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2809200			21027	6900	13374	13434							0.019670401340590615
MEGPVRIAA	9	Unmodified	_MEGPVRIAA_					0	0	0		ENST00000527967.5_1_11:125932492-125932705:-|nuORF	ENST00000527967.5_1_11:125932492-125932705:-|nuORF	ENST00000527967.5_1_11:125932492-125932705:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	472.25543212890625	2	472.25512	942.495686	0.35759	0.00016887	0.6514	0.00030763	1.009	0.0004765	472.25537559282867	35.658	0.30849	35.515	35.386	35.695	-0.14245					9	5	2	0	0	0	0.053544	1	13323	13323		72.968	31.128	1	31773000			21028	8601	13375	13435	20196	20196					0.022138448826240165
MEGPVRIAA	9	Unmodified	_MEGPVRIAA_					0	0	0		ENST00000527967.5_1_11:125932492-125932705:-|nuORF	ENST00000527967.5_1_11:125932492-125932705:-|nuORF	ENST00000527967.5_1_11:125932492-125932705:-|nuORF	MSMS	HCT116MG_D190212_S3	3	472.2556457519531	2	472.25512	942.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.924	1	35.624	35.124	36.124	-0.30042								0	0	0	0.41664	1	13256	13256		32.786	12.332	1				21029	8601	13375	13435	20197	20197					0.022138448826240165
MEGSHQGAP	9	Unmodified	_MEGSHQGAP_					0	0	0		ENSG00000168334|ENST00000340369|XIRP1;nc|ENSG00000168334|Q702N8-3|XIRP1	ENSG00000168334|ENST00000340369|XIRP1	ENSG00000168334|ENST00000340369|XIRP1	MULTI-MSMS	HCT116MG_D190212_S2	2	457.1951599121094	2	457.195259	912.375965	0.16064	7.3443E-05	0.15044	6.878E-05	0.31108	0.00014222	457.19518822094284	17.137	0.31281	16.788	16.665	16.978	-0.34933					9	5	3	0	0	0	0.13706	1	5844	5844		50.855	1.3007	1	5480500			21030	5002	13376	13436	20198	20198					-0.08372768461924807
MEHDGSLFQA	10	Unmodified	_MEHDGSLFQA_					0	0	0		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MSMS	HCT116MG_D190212_S1	1	567.7487182617188	2	567.747856	1133.48116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.754	1	39.754	39.254	40.254	0								0	0	0	0.61644	1	14922	14922		41.84	20.303	1				21031	1722	13377	13437	20199	20199					-0.08024272056150039
MEHDGSLFQA	10	Unmodified	_MEHDGSLFQA_					0	0	0		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	HCT116MG_D190212_S2	2	567.7471313476562	2	567.747856	1133.48116	0.30127	0.00017105	-0.59806	-0.00033955	-0.29679	-0.0001685	568.2492958763431	39.659	0.40908	39.582	39.428	39.837	-0.077839					13	7	2	0	0	0	0.23641	1	14952	14952		56.177	34.64	1	38074000			21032	1722	13377	13437	20200	20200					-0.08024272056150039
MEHNRVLEA	9	Oxidation (M)	_M(Oxidation (M))EHNRVLEA_		M(1)EHNRVLEA		M(76)EHNRVLEA	0	0	1		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S1	1	557.7703247070312	2	557.769123	1113.52369	0.43667	0.00024356	-0.2543	-0.00014184	0.18237	0.00010172	557.7696017010835	22.455	0.31305	22.455	22.272	22.585	0					11	5	3	0	0	0	0.048237	1	7961	7961		75.571	47.942	1	7760900			21033	5087	13378	13438	20201	20201		110			-0.02852876927931902
MEHNRVLEA	9	Oxidation (M)	_M(Oxidation (M))EHNRVLEA_		M(1)EHNRVLEA		M(76)EHNRVLEA	0	0	1		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	HCT116MG_D190212_S2	2	557.7688598632812	2	557.769123	1113.52369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.121	1	22.736	22.236	23.236	-0.3852								0	0	0	0.037427	1	8225	8225		75.571	37.597	1				21034	5087	13378	13438	20202	20202		110			-0.02852876927931902
MEHNRVLEA	9	Unmodified	_MEHNRVLEA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S1	1	549.7706298828125	2	549.771665	1097.52878	0.65901	0.0003623	-0.40024	-0.00022004	0.25877	0.00014226	549.7714927084635	24.558	0.26119	24.558	24.412	24.673	0					9	4	3	0	0	0	0.0047539	1	8803	8803		139.78	99.825	1	20286000			21035	5087	13378	13439	20203	20203					-0.01608573065300334
MEHNRVLEA	9	Unmodified	_MEHNRVLEA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	HCT116MG_D190212_S1	1	366.84979248046875	3	366.850202	1097.52878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.603	1	24.603	24.103	25.103	0								0	0	0	0.47756	1	8814	8814		28.234	13.828	1				21036	5087	13378	13439	20204	20204					-0.01608573065300334
MEHNRVLEA	9	Unmodified	_MEHNRVLEA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S2	2	549.7718505859375	2	549.771665	1097.52878	0.49876	0.00027421	0.059989	3.298E-05	0.55875	0.00030719	549.7716913391661	25.113	0.3641	24.738	24.608	24.972	-0.37521					15	6	3	0	0	0	0.0039465	1	9030	9030		151.48	107.62	1	178430000			21037	5087	13378	13439	20205	20205					-0.01608573065300334
MEHNRVLEA	9	Unmodified	_MEHNRVLEA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S2	2	366.8501281738281	3	366.850202	1097.52878	-0.11879	-4.3577E-05	0.086325	3.1668E-05	-0.032461	-1.1908E-05	366.85018616643316	25.114	0.31228	24.739	24.608	24.92	-0.37521					15	5	4	0	0	0	0.16285	1	9036	9036		36.395	1.4629	1	59162000			21038	5087	13378	13439	20206	20206					-0.01608573065300334
MEHNRVLEA	9	Unmodified	_MEHNRVLEA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S3	3	549.7717895507812	2	549.771665	1097.52878	0.39022	0.00021453	0.03292	1.8098E-05	0.42314	0.00023263	549.7717200529172	24.503	0.31248	24.419	24.237	24.549	-0.083694					12	5	3	0	0	0	0.0051419	1	8728	8728		136.39	96.435	1	15210000			21039	5087	13378	13439	20207	20207					-0.01608573065300334
MEHNRVLEA	9	Unmodified	_MEHNRVLEA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	HCT116MG_D190212_S3	3	366.8499755859375	3	366.850202	1097.52878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.579	1	24.496	23.996	24.996	-0.083694								0	0	0	0.64932	1	8735	8735		20.581	10.43	1				21040	5087	13378	13439	20208	20208					-0.01608573065300334
MEHNRVLEA	9	Unmodified	_MEHNRVLEA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	HCT116MG_D190212_S4	4	549.7721557617188	2	549.771665	1097.52878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.917	1	24.648	24.148	25.148	-0.26881								0	0	0	0.21854	1	8804	8804		46.022	29.08	1				21041	5087	13378	13439	20209	20209					-0.01608573065300334
MEHPFFTL	8	Unmodified	_MEHPFFTL_					0	0	0		ENST00000477540.1_1_17:21215348-21217539:+|nuORF;nc|ENSG00000034152|P46734-2|MAP2K3;ENSG00000034152|ENST00000342679|MAP2K3;nc|ENSG00000034152|P46734-3|MAP2K3	ENST00000477540.1_1_17:21215348-21217539:+|nuORF	ENST00000477540.1_1_17:21215348-21217539:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2442321777344	2	511.244221	1020.47389	0.36178	0.00018496	-0.15164	-7.7523E-05	0.21015	0.00010744	511.2440594010206	55.851	0.2072	55.665	55.535	55.742	-0.18565					6	3	2	0	0	0	0.62424	1	21562	21562		30.225	0	1	56800000			21042	977	13379	13440	20210	20210					-0.03552959865919547
MEHPGLQAI	9	Unmodified	_MEHPGLQAI_					0	0	0		TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	498.25238037109375	2	498.252577	994.490601	0.31677	0.00015783	0.16645	8.2934E-05	0.48322	0.00024077	498.25243840961264	38.55	0.31891	38.466	38.278	38.597	-0.084618					9	5	2	0	0	0	0.020181	1	14492	14492		96.285	38.813	1	44981000			21043	1786	13380	13441	20211	20211					-0.006864589799761234
MEHPGLQAI	9	Unmodified	_MEHPGLQAI_					0	0	0		TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2527770996094	2	498.252577	994.490601	0.26788	0.00013347	0.52857	0.00026336	0.79645	0.00039684	498.25275640438304	38.784	0.2605	38.482	38.352	38.613	-0.30137					8	4	2	0	0	0	0.1754	1	14409	14409		43.858	18.459	1	5406700			21044	1786	13380	13441	20212	20212					-0.006864589799761234
MEHPGLQAI	9	Unmodified	_MEHPGLQAI_					0	0	0		TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	TTI1|p.L924Wfs*37|2|0.15|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	498.252577	994.490601	-0.29746	-0.00014821	-0.031461	-1.5675E-05	-0.32892	-0.00016389	498.2524751685356	38.514	0.20871	38.514	38.384	38.592	0	0.026783	-0.00037425	NaN	96.285	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5315700			21045	1786	13380	13441							-0.006864589799761234
MEHPYFYTV	9	Unmodified	_MEHPYFYTV_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S1	1	593.765380859375	2	593.765517	1185.51648	0.61034	0.0003624	0.091893	5.4563E-05	0.70224	0.00041696	593.7657633169893	47.271	0.3327	47.271	47.062	47.395	0					16	6	3	0	0	0	0.023611	1	17942	17942		92.822	52.872	1	79767000			21046	1770	13381	13442	20213	20213					-0.06885609528376335
MEHPYFYTV	9	Unmodified	_MEHPYFYTV_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	593.7658081054688	2	593.765517	1185.51648	0.77971	0.00046296	-0.17121	-0.00010166	0.60849	0.0003613	593.7654210263444	47.329	0.62116	47.207	46.974	47.595	-0.12175					39	11	5	0	0	0	0.027492	1	18017	18017		88.904	42.883	1	824010000			21047	1770	13381	13442	20214	20214					-0.06885609528376335
MEHPYFYTV	9	Unmodified	_MEHPYFYTV_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	1186.5240478515625	1	1186.52376	1185.51648	0.63192	0.00074979	-0.097109	-0.00011522	0.53481	0.00063457	1186.5237337124636	47.329	0.31025	47.207	47.026	47.336	-0.12175					16	5	4	0	0	0	0.0036294	1	18055	18055		156.16	98.685	1	42040000			21048	1770	13381	13442	20215	20215					-0.06885609528376335
MEHPYFYTV	9	Unmodified	_MEHPYFYTV_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S3	3	593.7659301757812	2	593.765517	1185.51648	0.41911	0.00024885	0.20129	0.00011952	0.6204	0.00036837	593.7655736498602	47.597	0.50737	47.282	47.06	47.567	-0.31525					26	10	4	0	0	0	0.035914	2	17861	17820;17861		81.613	43.462	1	75740000			21049	1770	13381	13442	20216;20217	20217					-0.06885609528376335
MEHPYFYTV	9	Unmodified	_MEHPYFYTV_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S4	4	593.7652587890625	2	593.765517	1185.51648	0.9798	0.00058177	-0.51316	-0.0003047	0.46664	0.00027707	593.7651514956249	47.615	0.28345	47.246	47.134	47.418	-0.36907					22	12	3	0	0	0	0.071351	1	17589	17589		64.236	36.608	1	13770000			21050	1770	13381	13442	20218	20218					-0.06885609528376335
MEHPYFYTV	9	Oxidation (M)	_M(Oxidation (M))EHPYFYTV_		M(1)EHPYFYTV		M(74)EHPYFYTV	0	0	1		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MSMS	HCT116MG_D190212_S1	1	601.7630004882812	2	601.762975	1201.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.943	1	44.943	44.443	45.443	0								0	0	0	0.038654	1	17016	17016		74.423	42.117	1				21051	1770	13381	13443	20219	20219		34			-0.08129913391007904
MEHPYFYTV	9	Oxidation (M)	_M(Oxidation (M))EHPYFYTV_		M(1)EHPYFYTV		M(64)EHPYFYTV	0	0	1		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	601.7632446289062	2	601.762975	1201.5114	0.88175	0.0005306	-0.7963	-0.00047918	0.085447	5.1419E-05	601.7628381679833	44.85	0.94249	44.765	44.166	45.109	-0.084797					32	17	4	0	0	0	0.071351	1	17035	17035		64.236	30.134	1	96006000			21052	1770	13381	13443	20220	20220		34			-0.08129913391007904
MEHPYFYTV	9	Oxidation (M)	_M(Oxidation (M))EHPYFYTV_		M(1)EHPYFYTV		M(82)EHPYFYTV	0	0	1		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S3	3	601.7630615234375	2	601.762975	1201.5114	0.67053	0.0004035	0.13782	8.2937E-05	0.80835	0.00048643	601.7628988367384	45.121	0.66062	44.812	44.489	45.15	-0.30927					28	12	4	0	0	0	0.035914	2	16868	16868;16876		81.613	43.639	1	25303000			21053	1770	13381	13443	20221;20222	20221		34			-0.08129913391007904
MEHPYFYTV	9	Oxidation (M)	_M(Oxidation (M))EHPYFYTV_		M(1)EHPYFYTV		M(61)EHPYFYTV	0	0	1		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S4	4	601.7626953125	2	601.762975	1201.5114	1.286	0.00077389	-0.58143	-0.00034988	0.70461	0.00042401	601.7624356828131	45.203	0.42653	44.83	44.613	45.039	-0.37266					18	8	3	0	0	0	0.084109	1	16663	16663		61.357	26.956	1	9854900			21054	1770	13381	13443	20223	20223		34			-0.08129913391007904
MEHQAVVGA	9	Unmodified	_MEHQAVVGA_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA;ENST00000586280.1_1_19:13041410-13044450:-|nuORF;FARSA|p.G146Dfs*14|1|0.44|ENSG00000179115|chr19:12930289-12930289|C/-|frameshift_variant;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MSMS	HCT116MG_D190212_S2	2	471.2290954589844	2	471.229102	940.443651	0.17216	8.1125E-05	0.55367	0.00026091	0.72583	0.00034203	471.22918153013995	23.449	0.31079	23.063	22.882	23.193	-0.3852					7	5	2	0	0	0	0.29516	1	8390	8390		31.268	4.3847	1	15978000			21055	5537	13382	13444	20224	20224					-0.02895318531113844
MEHQAVVGA	9	Unmodified	_MEHQAVVGA_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA;ENST00000586280.1_1_19:13041410-13044450:-|nuORF;FARSA|p.G146Dfs*14|1|0.44|ENSG00000179115|chr19:12930289-12930289|C/-|frameshift_variant;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MATCH	HCT116MG_D190212_S1	1		2	471.229102	940.443651	0.21835	0.00010289	-0.44246	-0.0002085	-0.22411	-0.00010561	471.22871557192923	22.942	0.20807	22.942	22.793	23.001	0	-0.060788	-0.00024517	NaN	31.268	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4642700			21056	5537	13382	13444							-0.02895318531113844
MEHSADGL	8	Unmodified	_MEHSADGL_					0	0	0		ENSG00000120057|ENST00000266066|SFRP5	ENSG00000120057|ENST00000266066|SFRP5	ENSG00000120057|ENST00000266066|SFRP5	MSMS	HCT116MG_D190212_S2	2	430.1842956542969	2	430.18436	858.354167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.19	1	19.813	19.313	20.313	-0.3771								0	0	0	0.8837	1	7044	7044		13.508	0.97634	1				21057	2682	13383	13445	20225	20225					-0.08067573210507817
MEIDIPHVW	9	Unmodified	_MEIDIPHVW_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046395-184046545:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	570.2815551757812	2	570.281334	1138.54812	0.47707	0.00027206	0.30816	0.00017574	0.78522	0.0004478	570.2813735836138	55.953	0.20476	55.767	55.639	55.844	-0.18565					8	3	3	0	0	0	0.084109	1	21603	21603		61.357	40.904	1	77777000			21058	2435	13384	13446	20226	20226					-0.0156161677439286
MEIDIPHVW	9	Unmodified	_MEIDIPHVW_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046395-184046545:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	570.281334	1138.54812	0.37355	0.00021303	0.263	0.00014998	0.63654	0.00036301	570.2815743692172	55.873	0.15351	55.873	55.76	55.913	0	0.052875	-4.8944E-05	NaN	61.357	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12115000			21059	2435	13384	13446							-0.0156161677439286
MEIFMEEM	8	Unmodified	_MEIFMEEM_					0	0	0		ENSG00000166681|ENST00000361298|BEX3;nc|ENSG00000166681|Q00994|BEX3	ENSG00000166681|ENST00000361298|BEX3	ENSG00000166681|ENST00000361298|BEX3	MULTI-MSMS	HCT116MG_D190212_S2	2	1059.420166015625	1	1059.41955	1058.41228	0.68019	0.00072061	-0.12376	-0.00013111	0.55643	0.0005895	1059.419332242093	56.84	0.15777	56.661	56.582	56.739	-0.17904					4	2	2	0	0	0	0.74206	1	21966	21966		18.135	0	1	14866000			21060	4872	13385	13447	20227	20227					-0.11459395671749917
MEIKVKDY	8	Unmodified	_MEIKVKDY_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2704467773438	2	513.270435	1024.52632	0.28373	0.00014563	-0.024839	-1.2749E-05	0.25889	0.00013288	513.2703605489405	31.112	0.25804	30.845	30.716	30.974	-0.26704					6	4	2	0	0	0	0.51015	1	11494	11494		40.239	11.158	1	16524000			21061	1441	13386	13448	20228	20228					0.015035784770134342
MEIKVKDY	8	Unmodified	_MEIKVKDY_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MSMS	HCT116MG_D190212_S3	3	513.2706909179688	2	513.270435	1024.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.321	1	31.058	30.558	31.558	-0.263								0	0	0	0.29346	1	11438	11438		55.503	15.054	1				21062	1441	13386	13448	20229	20229					0.015035784770134342
MEKEADAKAA	10	Unmodified	_MEKEADAKAA_					0	0	0		RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant;RBM14|p.K594Rfs*15|1|0.67|ENSG00000239306|chr11:66625653-66625653|A/-|frameshift_variant;ENSG00000239306|ENST00000310137|RBM14;nc|ENSG00000239306|Q96PK6-2|RBM14	RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant	RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	532.2586669921875	2	532.258056	1062.50156	0.31527	0.00016781	0.35599	0.00018948	0.67127	0.00035729	532.2581648886542	14.694	0.2088	14.375	14.244	14.453	-0.31952					5	3	2	0	0	0	0.036414	1	4833	4833		97.284	67.443	1	1917900			21063	6534	13387	13449	20230	20230					-0.027191013963602018
MEKIWHHTF	9	Unmodified	_MEKIWHHTF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000420887.2_1_3:180538532-180538697:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S1	1	410.2025451660156	3	410.202576	1227.5859	0.12569	5.1557E-05	-0.21811	-8.9471E-05	-0.092427	-3.7914E-05	410.20242941715713	33.167	0.51852	33.167	32.933	33.452	0					13	9	3	0	0	0	0.018739	1	12287	12287		97.741	77.16	1	26912000			21064	1322;3824	13388	13450	20231	20231					-0.01879105788952984
MEKIWHHTF	9	Unmodified	_MEKIWHHTF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000420887.2_1_3:180538532-180538697:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MSMS	HCT116MG_D190212_S1	1	614.80029296875	2	614.800226	1227.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.231	1	33.231	32.731	33.731	0								0	0	0	0.017092	1	12290	12290		114.19	86.558	1				21065	1322;3824	13388	13450	20232	20232					-0.01879105788952984
MEKIWHHTF	9	Unmodified	_MEKIWHHTF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000420887.2_1_3:180538532-180538697:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S2	2	614.8007202148438	2	614.800226	1227.5859	0.72235	0.0004441	0.0027711	1.7037E-06	0.72512	0.0004458	614.8000356342401	33.387	0.30806	33.194	33.019	33.327	-0.19297					13	5	3	0	0	0	0.0040349	2	12394	12364;12394		176.43	136.48	1	107500000			21066	1322;3824	13388	13450	20233;20234	20234					-0.01879105788952984
MEKIWHHTF	9	Unmodified	_MEKIWHHTF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000420887.2_1_3:180538532-180538697:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S2	2	410.20306396484375	3	410.202576	1227.5859	0.18708	7.6741E-05	0.034538	1.4168E-05	0.22162	9.0909E-05	410.2025646424012	33.391	0.30806	33.198	33.019	33.327	-0.19296					17	5	4	0	0	0	0.020429	1	12381	12381		96.034	66.597	1	152530000			21067	1322;3824	13388	13450	20235	20235					-0.01879105788952984
MEKIWHHTF	9	Unmodified	_MEKIWHHTF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;POTEE|p.N792Kfs*34|1|0.2|ENSG00000188219|chr2:131263828-131263829|-/A|frameshift_variant;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000420887.2_1_3:180538532-180538697:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MATCH	HCT116MG_D190212_S3	3		3	410.202576	1227.5859	0.066999	2.7483E-05	0.2387	9.7917E-05	0.3057	0.0001254	410.2025902270784	33.568	0.2075	33.278	33.148	33.356	-0.29013	0.063473	0.00034782	NaN	97.741	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3723400			21068	1322;3824	13388	13450							-0.01879105788952984
MEKPEKNLP	9	Unmodified	_MEKPEKNLP_					0	0	0		tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	542.7565307617188	2	543.286617	1084.55868	0.41415	0.000225	0.10457	5.6814E-05	0.51873	0.00028182	543.2868855819846	44.521	0.5834	44.521	44.141	44.724	0					13	10	2	0	0	0	0.2458	1	16908	16908		18.146	1.0335	1	7206700			21069	18292	13389	13451	20236	20236					0.019783658800179182
MEKPEKNLP	9	Unmodified	_MEKPEKNLP_					0	0	0		tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	542.7564697265625	2	543.286617	1084.55868	0.68981	0.00037476	-0.065833	-3.5766E-05	0.62397	0.000339	543.2866027789291	44.668	0.78329	44.584	44.063	44.846	-0.084797					27	14	3	0	0	0	0.15894	1	16946	16946		46.021	0.32134	1	49605000			21070	18292	13389	13451	20237	20237					0.019783658800179182
MEKSFSDLF	9	Unmodified	_MEKSFSDLF_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;ENST00000404054.3_1_4:1742398-1742845:+|nuORF;ENST00000470808.1_1_4:1741140-1742845:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MSMS	HCT116MG_D190212_S1	1	552.2579345703125	2	552.257525	1102.5005	0.60262	0.0003328	-0.9464	-0.00052265	-0.34378	-0.00018985	552.2572286555065	53.385	0.2071	53.385	53.255	53.462	0					5	3	2	0	0	0	0.014023	1	20460	20460		103.42	61.58	1	21758000			21071	918	13390	13452	20238	20238					-0.04665315765282685
MEKSFSDLF	9	Unmodified	_MEKSFSDLF_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;ENST00000404054.3_1_4:1742398-1742845:+|nuORF;ENST00000470808.1_1_4:1741140-1742845:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MSMS	HCT116MG_D190212_S2	2	552.2576293945312	2	552.257525	1102.5005	0.2371	0.00013094	-0.16485	-9.104E-05	0.072252	3.9902E-05	552.2575000696072	53.644	0.31017	53.454	53.325	53.636	-0.1894					15	5	4	0	0	0	0.014023	1	20643	20643		103.42	39.459	1	75331000			21072	918	13390	13452	20239	20239					-0.04665315765282685
MEKSFSDLF	9	Unmodified	_MEKSFSDLF_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;ENST00000404054.3_1_4:1742398-1742845:+|nuORF;ENST00000470808.1_1_4:1741140-1742845:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MSMS	HCT116MG_D190212_S3	3	552.2576293945312	2	552.257525	1102.5005	0.4458	0.0002462	-0.048331	-2.6691E-05	0.39747	0.00021951	552.257637759763	53.821	0.20884	53.521	53.404	53.613	-0.29946					8	3	3	0	0	0	0.051033	1	20395	20395		74.2	34.242	1	4246700			21073	918	13390	13452	20240	20240					-0.04665315765282685
MELADPFHV	9	Unmodified	_MELADPFHV_					0	0	0			REV__LRRK2|p.N710Mfs*2|1|0.49|ENSG00000188906|chr12:40278144-40278144|A/-|frameshift_variant	REV__LRRK2|p.N710Mfs*2|1|0.49|ENSG00000188906|chr12:40278144-40278144|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	529.7451782226562	2	529.75241	1057.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.253	1	26.253	25.753	26.753	0								0	0	0	0.64498	1	9478	9478		21.747	2.4897	1		+		21074	13980	13391	13453	20241	20241					-0.036178786998334544
MELERIVSA	9	Unmodified	_MELERIVSA_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MSMS	HCT116MG_D190212_S3	3	524.2793579101562	2	524.278792	1046.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.069	1	42.764	42.264	43.264	-0.30472								0	0	0	0.037427	1	16063	16063		75.571	33.476	1				21075	2134	13392	13454	20242	20242					0.021620793629836044
MELLKHSVE	9	Unmodified	_MELLKHSVE_					0	0	0			REV__ENSG00000100865|ENST00000216756|CINP	REV__ENSG00000100865|ENST00000216756|CINP	MULTI-MSMS	HCT116MG_D190212_S2	2	543.286865234375	2	543.286617	1084.55868	0.68981	0.00037476	-0.065833	-3.5766E-05	0.62397	0.000339	543.2866027789291	44.668	0.78329	44.584	44.063	44.846	-0.084797					27	14	3	0	0	0	0.22946	1	16904	16904		38.176	3.7738	1	49605000	+		21076	11105	13393	13455	20243	20243					0.019783658800179182
MELLKHSVE	9	Unmodified	_MELLKHSVE_					0	0	0			REV__ENSG00000100865|ENST00000216756|CINP	REV__ENSG00000100865|ENST00000216756|CINP	MULTI-MSMS	HCT116MG_D190212_S3	3	543.28662109375	2	543.286617	1084.55868	0.66157	0.00035942	-0.32353	-0.00017577	0.33804	0.00018365	543.2866713956322	44.927	0.5721	44.618	44.265	44.837	-0.30927					27	14	3	0	0	0	0.21258	1	16740	16740		39.95	5.548	1	11318000	+		21077	11105	13393	13455	20244	20244					0.019783658800179182
MELLKHSVE	9	Unmodified	_MELLKHSVE_					0	0	0			REV__ENSG00000100865|ENST00000216756|CINP	REV__ENSG00000100865|ENST00000216756|CINP	MULTI-SECPEP	HCT116MG_D190212_S3	3	543.2446899414062	2	543.286617	1084.55868	0.66157	0.00035942	-0.32353	-0.00017577	0.33804	0.00018365	543.2866713956322	44.927	0.5721	44.618	44.265	44.837	-0.30927					27	14	3	0	0	0	0.20548	1	16881	16881		32.786	11.249	1	11318000	+		21078	11105	13393	13455	20245	20245					0.019783658800179182
MELLKHSVE	9	Unmodified	_MELLKHSVE_					0	0	0			REV__ENSG00000100865|ENST00000216756|CINP	REV__ENSG00000100865|ENST00000216756|CINP	MULTI-MSMS	HCT116MG_D190212_S4	4	543.286865234375	2	543.286617	1084.55868	0.50354	0.00027357	0.19575	0.00010635	0.69929	0.00037991	543.2869073209549	44.892	0.3207	44.518	44.459	44.779	-0.37326					15	10	2	0	0	0	0.21258	1	16568	16568		39.95	12.321	1	4991500	+		21079	11105	13393	13455	20246	20246					0.019783658800179182
MELRLKAVA	9	Unmodified	_MELRLKAVA_					0	0	0		ENST00000504300.1_1_5:79781370-79783658:-|nuORF;ENST00000508000.5_1_5:79781363-79783658:-|nuORF	ENST00000504300.1_1_5:79781370-79783658:-|nuORF	ENST00000504300.1_1_5:79781370-79783658:-|nuORF	MSMS	HCT116MG_D190212_S2	2	515.8076782226562	2	515.807519	1029.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.45	1	37.347	36.847	37.847	-0.10318								0	0	0	0.403	1	14038	14038		33.445	0.65921	1				21080	8441	13394	13456	20247	20247					0.08686966359186954
MELRLKAVA	9	Unmodified	_MELRLKAVA_					0	0	0		ENST00000504300.1_1_5:79781370-79783658:-|nuORF;ENST00000508000.5_1_5:79781363-79783658:-|nuORF	ENST00000504300.1_1_5:79781370-79783658:-|nuORF	ENST00000504300.1_1_5:79781370-79783658:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	516.2720947265625	2	515.807519	1029.60049	0.06041	3.116E-05	0.69492	0.00035845	0.75533	0.00038961	515.807851625317	37.413	0.25771	37.31	37.078	37.335	-0.10318					7	4	2	0	0	0	0.18023	1	14002	14002		41.956	15.072	1	28222000			21081	8441	13394	13456	20248	20248					0.08686966359186954
MELSVLSGL	9	Unmodified	_MELSVLSGL_					0	0	0			REV__nc|ENSG00000164904|P49419-4|ALDH7A1	REV__nc|ENSG00000164904|P49419-4|ALDH7A1	MULTI-MSMS	HCT116MG_D190212_S2	2	474.7573547363281	2	474.757161	947.499769	0.48635	0.0002309	-0.083315	-3.9554E-05	0.40303	0.00019134	474.7570866088303	44.75	0.25939	44.665	44.535	44.794	-0.084797					7	4	2	0	0	0	0.084109	1	17029	17029		61.357	9.7277	1	37927000	+		21082	9915	13395	13457	20249	20249					0.023918895856809286
MELVRNDTL	9	Unmodified	_MELVRNDTL_					0	0	0			REV__OR4E2|p.G152Vfs*6|1|0.29|ENSG00000221977|chr14:21665532-21665532|G/-|frameshift_variant	REV__OR4E2|p.G152Vfs*6|1|0.29|ENSG00000221977|chr14:21665532-21665532|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	364.19012451171875	3	364.190225	1089.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.348	1	36.22	35.72	36.72	-0.12799								0	0	0	0.76781	1	13589	13589		5.2969	0	1		+		21083	14293	13396	13458	20250	20250					0.007651778746321725
MEMLCAGRVP	10	Carbamidomethyl (C)	_MEMLC(Carbamidomethyl (C))AGRVP_	MEMLC(1)AGRVP		MEMLC(83)AGRVP		0	1	0		EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	582.2730102539062	2	582.272129	1162.52971	0.73662	0.00042892	-0.52912	-0.00030809	0.20751	0.00012083	582.2721299887493	41.741	0.57312	41.741	41.55	42.123	0					24	10	3	0	0	0	0.055088	1	15734	15734		83.429	60.771	1	13292000			21084	2869	13397	13459	20251	20251	12				-0.0450581801228509
MEMLCAGRVP	10	Carbamidomethyl (C)	_MEMLC(Carbamidomethyl (C))AGRVP_	MEMLC(1)AGRVP		MEMLC(74)AGRVP		0	1	0		EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	582.2720336914062	2	582.272129	1162.52971	0.55576	0.00032361	-0.023663	-1.3778E-05	0.5321	0.00030983	582.272054972952	41.695	0.82728	41.627	41.447	42.274	-0.068199					28	15	2	0	0	0	0.099369	1	15793	15793		74.2	50.41	1	22072000			21085	2869	13397	13459	20252	20252	12				-0.0450581801228509
MEMLCAGRVP	10	Carbamidomethyl (C)	_MEMLC(Carbamidomethyl (C))AGRVP_	MEMLC(1)AGRVP		MEMLC(90)AGRVP		0	1	0		EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	582.2726440429688	2	582.272129	1162.52971	0.44616	0.00025979	-0.29124	-0.00016958	0.15491	9.0202E-05	582.2721342450159	42.012	1.1335	41.709	41.48	42.614	-0.30257					53	21	3	0	0	0	0.04605	3	15621	15621;15849;15968		90.135	67.399	1	16054000			21086	2869	13397	13459	20253;20254;20255	20253	12				-0.0450581801228509
MEMLCAGRVP	10	Carbamidomethyl (C)	_MEMLC(Carbamidomethyl (C))AGRVP_	MEMLC(1)AGRVP		MEMLC(81)AGRVP		0	1	0		EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	582.2715454101562	2	582.272129	1162.52971	0.23432	0.00013644	-0.28013	-0.00016311	-0.04581	-2.6674E-05	582.2720233030268	42.033	0.82541	41.657	41.53	42.355	-0.37637					28	15	3	0	0	0	0.066546	1	15440	15440		80.676	61.419	1	4786700			21087	2869	13397	13459	20256	20256	12				-0.0450581801228509
MEMLCAGRVP	10	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))EMLC(Carbamidomethyl (C))AGRVP_	MEMLC(1)AGRVP	M(0.999)EM(0.001)LCAGRVP	MEMLC(68)AGRVP	M(31)EM(-31)LCAGRVP	0	1	1		EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	590.2705078125	2	590.269587	1178.52462	0.38087	0.00022481	0.5218	0.000308	0.90266	0.00053281	590.2699073804382	36.703	0.83214	36.401	35.885	36.717	-0.30113					21	15	2	0	0	0	0.13161	1	13514	13514		67.838	48.581	2	2937100			21088	2869	13397	13460	20257	20257	12	64			-0.057501218748711835
MEMLCAGRVPA	11	Carbamidomethyl (C)	_MEMLC(Carbamidomethyl (C))AGRVPA_	MEMLC(1)AGRVPA		MEMLC(69)AGRVPA		0	1	0		EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	617.7909545898438	2	617.790686	1233.56682	0.23653	0.00014613	0.0071998	4.448E-06	0.24373	0.00015058	617.7910580738653	40.144	0.3936	39.843	39.666	40.06	-0.30137					16	7	3	0	0	0	0.25343	1	14910	14910		69.338	34.406	1	10306000			21089	2869	13398	13461	20258	20258	12				-0.04062146466503691
MEMLCAGRVPA	11	Carbamidomethyl (C)	_MEMLC(Carbamidomethyl (C))AGRVPA_	MEMLC(1)AGRVPA		MEMLC(46)AGRVPA		0	1	0		EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant;ENST00000507603.1_1_4:75230965-75246855:+|nuORF;ENSG00000124882|ENST00000244869|EREG	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	EREG|p.S45*|1|0.31|ENSG00000124882|chr4:74379512-74379513|CA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	617.7906494140625	2	617.790686	1233.56682	0.58118	0.00035905	0.1273	7.8648E-05	0.70848	0.00043769	617.7909978118365	40.244	0.30025	39.866	39.733	40.034	-0.37828					10	6	2	0	0	0	0.50128	1	14755	14755		46.022	28.58	1	4835700			21090	2869	13398	13461	20259	20259	12				-0.04062146466503691
MEMPSFYSH	9	Unmodified	_MEMPSFYSH_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR;nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	HCT116MG_D190212_S2	2	564.727783203125	2	564.728077	1127.4416	0.49772	0.00028108	-0.45931	-0.00025939	0.038413	2.1693E-05	564.7278370453807	45.239	0.41591	45.146	44.943	45.359	-0.092472					17	7	3	0	0	0	0.042978	1	17219	17219		78.149	56.403	1	23799000			21091	4461;9517	13399	13462	20260	20260					-0.11702115331240748
MEMRVLCRKM	10	Unmodified	_MEMRVLCRKM_					0	0	0			REV__ENST00000563984.1_1_16:46717374-46723045:-|nuORF	REV__ENST00000563984.1_1_16:46717374-46723045:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.885009765625	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5402	1	5.2787	4.7787	5.7787	-0.26151								0	0	0	0.97045	1	1688	1688		0.15932	0	1		+		21092	16520	13400	13463	20261	20261					-0.002532341762616852
MEMTNSHLA	9	Unmodified	_MEMTNSHLA_					0	0	0		nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2;nc|ENSG00000093167|Q9Y608-3|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF	nc|ENSG00000093167|Q9Y608-2|LRRFIP2	nc|ENSG00000093167|Q9Y608-2|LRRFIP2	MSMS	HCT116MG_D190212_S3	3	517.2261352539062	2	517.225702	1032.43685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.778	1	29.542	29.042	30.042	-0.23655								0	0	0	0.55145	1	10829	10829		26.268	9.1552	1				21093	1595	13401	13464	20262	20262					-0.0780699947397352
MEMTRVDLRNY	11	Unmodified	_MEMTRVDLRNY_					0	0	0		ENSG00000214026|ENST00000397298|MRPL23;ENST00000462288.5_1_11:1968785-1977647:+|nuORF;ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENSG00000214026|ENST00000397298|MRPL23	ENSG00000214026|ENST00000397298|MRPL23	MULTI-MSMS	HCT116MG_D190212_S3	3	476.5633850097656	3	476.563845	1426.6697	0.18995	9.0526E-05	-0.70716	-0.00033701	-0.51721	-0.00024648	476.5635709518489	21.619	0.26451	21.637	21.483	21.747	0.018446					7	4	2	0	0	0	0.73696	1	7560	7560		4.1166	0	1	4674700			21094	6426	13402	13465	20263	20263					-0.02656362474181151
MENAGHPSA	9	Unmodified	_MENAGHPSA_					0	0	0		ENST00000586344.5_1_19:5917623-5933521:-|nuORF;nc|ENSG00000031823|Q9H6Z4-3|RANBP3;ENST00000592771.5_1_19:5917623-5941693:-|nuORF;nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3;ENST00000587411.5_1_19:5925055-5932565:-|nuORF	ENST00000586344.5_1_19:5917623-5933521:-|nuORF	ENST00000586344.5_1_19:5917623-5933521:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	457.1954040527344	2	457.195259	912.375965	0.26242	0.00011998	0.011232	5.1353E-06	0.27365	0.00012511	457.19511003892904	16.126	0.25994	16.211	16.081	16.341	0.085424					7	4	2	0	0	0	0.053544	1	5342	5342		72.968	46.084	1	2240600			21095	968	13403	13466	20264	20264					-0.08372768461924807
MENEFVLI	8	Unmodified	_MENEFVLI_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENST00000396270.3_1_12:69099864-69100302:+|nuORF;ENST00000508125.1_1_5:122737431-122737524:-|nuORF;CON__H-INV:HIT000016045;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;CON__H-INV:HIT000292931;ENST00000551916.1_1_12:62273577-62274426:+|nuORF	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931;ENST00000551916.1_1_12:62273577-62274426:+|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	994.4913940429688	1	994.491395	993.484119	0.72628	0.00072228	-0.87864	-0.0008738	-0.15236	-0.00015152	994.490871894266	57.859	0.15696	57.684	57.574	57.73	-0.17494					4	2	2	0	0	0	0.44484	1	22366	22366		46.021	11.919	1	8409000		+	21096	558;541;8761	13404	13467	20265	20265					-0.012883969313520538
MENGAVYSP	9	Unmodified	_MENGAVYSP_					0	0	0		CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant;ENST00000495177.1_1_3:32529411-32544237:-|nuORF;ENSG00000091317|ENST00000205636|CMTM6	CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant	CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	967.4190063476562	1	967.418959	966.411682	0.83054	0.00080348	-0.44744	-0.00043286	0.3831	0.00037062	967.4184269523184	31.383	0.51762	31.134	30.888	31.406	-0.24883					11	9	2	0	0	0	0.023778	1	11601	11601		92.653	14.669	1	10172000			21097	486	13405	13468	20266	20266					-0.07286731004921876
MENGAVYSP	9	Unmodified	_MENGAVYSP_					0	0	0		CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant;ENST00000495177.1_1_3:32529411-32544237:-|nuORF;ENSG00000091317|ENST00000205636|CMTM6	CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant	CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	967.4163818359375	1	967.418959	966.411682	0.54433	0.0005266	-0.17568	-0.00016995	0.36866	0.00035665	967.418605246492	31.556	0.57408	31.285	30.908	31.482	-0.27028					19	10	2	0	0	0	0.034046	1	11465	11465		82.529	22.14	1	8546100			21098	486	13405	13468	20267	20267					-0.07286731004921876
MENGAVYSP	9	Unmodified	_MENGAVYSP_					0	0	0		CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant;ENST00000495177.1_1_3:32529411-32544237:-|nuORF;ENSG00000091317|ENST00000205636|CMTM6	CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant	CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	484.2127990722656	2	484.213117	966.411682	0.1402	6.7887E-05	-0.12433	-6.02E-05	0.015875	7.6867E-06	484.21299921112035	31.531	0.41749	31.261	31.064	31.482	-0.27027					10	7	2	0	0	0	0.31596	1	11551	11551		29.082	7.3349	1	3988200			21099	486	13405	13468	20268	20268					-0.07286731004921876
MENGAVYSP	9	Unmodified	_MENGAVYSP_					0	0	0		CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant;ENST00000495177.1_1_3:32529411-32544237:-|nuORF;ENSG00000091317|ENST00000205636|CMTM6	CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant	CMTM6|p.F71Lfs*4|1|0.25|ENSG00000091317|chr3:32491812-32491812|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	967.4194946289062	1	967.418959	966.411682	0.49122	0.00047521	0.60053	0.00058096	1.0917	0.0010562	967.4194916110033	31.65	0.46766	31.28	30.919	31.387	-0.37027					14	8	2	0	0	0	0.15273	1	11453	11453		47.749	15.632	1	2588400			21100	486	13405	13468	20269	20269					-0.07286731004921876
MENGSASVAA	10	Unmodified	_MENGSASVAA_					0	0	0		ENST00000443765.5_2_13:37569680-37573477:-|nuORF	ENST00000443765.5_2_13:37569680-37573477:-|nuORF	ENST00000443765.5_2_13:37569680-37573477:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	936.4097900390625	1	936.409122	935.401846	0.82613	0.00077359	-0.14747	-0.0001381	0.67865	0.0006355	936.4092041554959	22.307	0.25941	21.922	21.791	22.051	-0.3852					6	4	2	0	0	0	0.31047	1	7921	7921		49.554	24.155	1	16526000			21101	7939	13406	13469	20270	20270					-0.06843919010316313
MENGSASVAA	10	Unmodified	_MENGSASVAA_					0	0	0		ENST00000443765.5_2_13:37569680-37573477:-|nuORF	ENST00000443765.5_2_13:37569680-37573477:-|nuORF	ENST00000443765.5_2_13:37569680-37573477:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	936.40966796875	1	936.409122	935.401846	0.67387	0.00063102	0.0030431	2.8495E-06	0.67691	0.00063387	936.409034612687	22.015	0.41659	22.016	21.834	22.25	0.00074577					11	7	2	0	0	0	0.099369	1	7726	7726		74.2	26.451	1	10150000			21102	7939	13406	13469	20271	20271					-0.06843919010316313
MENGSASVAA	10	Unmodified	_MENGSASVAA_					0	0	0		ENST00000443765.5_2_13:37569680-37573477:-|nuORF	ENST00000443765.5_2_13:37569680-37573477:-|nuORF	ENST00000443765.5_2_13:37569680-37573477:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	936.4088745117188	1	936.409122	935.401846	0.67041	0.00062778	-0.49826	-0.00046658	0.17215	0.0001612	936.408544325974	22.222	0.20772	21.994	21.832	22.039	-0.22777					5	3	2	0	0	0	0.40349	1	7734	7734		41.956	13.469	1	2541600			21103	7939	13406	13469	20272	20272					-0.06843919010316313
MENIHSEMY	9	Oxidation (M)	_MENIHSEM(Oxidation (M))Y_		MENIHSEM(1)Y		M(-73)ENIHSEM(73)Y	0	0	1		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S1	1	585.2327270507812	2	585.233724	1168.45289	0.53467	0.00031291	-1.3285	-0.00077746	-0.79378	-0.00046455	585.2332772774276	26.886	0.20865	26.886	26.761	26.97	0					8	3	3	0	0	0	0.029121	1	9744	9744		87.258	58.177	2	7732700			21104	5216	13407	13470	20273	20273		113;114			-0.12459338027747435
MENIHSEMY	9	Oxidation (M)	_M(Oxidation (M))ENIHSEMY_		M(1)ENIHSEMY		M(68)ENIHSEM(-68)Y	0	0	1		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S1	1	585.2334594726562	2	585.233724	1168.45289	0.71328	0.00041743	-0.57374	-0.00033577	0.13954	8.1661E-05	585.2332852038728	29.451	0.15628	29.451	29.373	29.529	0					4	2	2	0	0	0	0.056114	1	10789	10789		71.708	45.44	2	9224200			21105	5216	13407	13470	20274	20274		113;114			-0.12459338027747435
MENIHSEMY	9	Oxidation (M)	_MENIHSEM(Oxidation (M))Y_		MENIHSEM(1)Y		M(-60)ENIHSEM(60)Y	0	0	1		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S2	2	585.2335205078125	2	585.233724	1168.45289	0.75951	0.00044449	-0.15134	-8.857E-05	0.60816	0.00035592	585.233626281906	27.301	0.20778	26.949	26.818	27.026	-0.35254					6	3	2	0	0	0	0.060947	1	9921	9921		69.338	51.192	2	16809000			21106	5216	13407	13470	20275	20275		113;114			-0.12459338027747435
MENIHSEMY	9	Oxidation (M)	_M(Oxidation (M))ENIHSEMY_		M(1)ENIHSEMY		M(59)ENIHSEM(-59)Y	0	0	1		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S2	2	585.2337646484375	2	585.233724	1168.45289	0.53453	0.00031283	-0.32184	-0.00018835	0.21269	0.00012447	585.2335659589347	29.839	0.20659	29.538	29.392	29.599	-0.30095					5	3	2	0	0	0	0.07468	1	10968	10968		63.227	27.183	2	11814000			21107	5216	13407	13470	20276	20276		113;114			-0.12459338027747435
MENIHSEMY	9	Unmodified	_MENIHSEMY_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S1	1	577.7385864257812	2	577.236267	1152.45798	0.58948	0.00034027	-0.26136	-0.00015087	0.32812	0.0001894	577.2361290299589	33.322	0.31054	33.322	33.141	33.452	0					12	5	3	0	0	0	0.0034865	1	12319	12319		165.72	109.54	1	32285000			21108	5216	13407	13471	20277	20277					-0.11215034165115867
MENIHSEMY	9	Unmodified	_MENIHSEMY_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S2	2	577.236328125	2	577.236267	1152.45798	0.74308	0.00042893	-0.0806	-4.6526E-05	0.66248	0.00038241	577.2360742655413	33.443	0.30771	33.25	33.123	33.43	-0.19297					10	5	2	0	0	0	0.0038512	1	12412	12412		152.89	96.709	1	145460000			21109	5216	13407	13471	20278	20278					-0.11215034165115867
MENIHSEMY	9	Unmodified	_MENIHSEMY_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF	ENSG00000171848|ENST00000304567|RRM2	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S3	3	577.2368774414062	2	577.236267	1152.45798	0.46139	0.00026633	-0.76788	-0.00044325	-0.30648	-0.00017691	577.236416268874	33.701	0.31102	33.411	33.252	33.563	-0.29013					11	5	3	0	0	0	0.0059958	1	12391	12391		128.93	80.587	1	9327400			21110	5216	13407	13471	20279	20279					-0.11215034165115867
MENLTAEEQP	10	Unmodified	_MENLTAEEQP_					0	0	0			REV__ENST00000530694.5_1_11:12023362-12031257:-|nuORF	REV__ENST00000530694.5_1_11:12023362-12031257:-|nuORF	MSMS	HCT116MG_D190212_S4	4	580.78125	2	581.258253	1160.50195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.907	1	18.723	18.223	19.223	-0.18452								0	0	0	0.91279	1	6378	6378		13.042	0	1		+		21111	10616	13408	13472	20280	20280					-0.07187726467168432
MENQDIAANY	10	Unmodified	_MENQDIAANY_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	HCT116MG_D190212_S3	3	584.7506103515625	2	584.750595	1167.48664	0.31133	0.00018205	0.068614	4.0122E-05	0.37994	0.00022217	584.7504581635408	28.2	0.20898	27.994	27.863	28.072	-0.20593					5	3	2	0	0	0	0.73913	1	10226	10226		17.113	4.8722	1	3763500			21112	3894	13409	13473	20281	20281					-0.09040593264353447
MENRPSVQA	9	Unmodified	_MENRPSVQA_					0	0	0		nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-MSMS	HCT116MG_D190212_S2	2	516.29931640625	2	516.250566	1030.48658	0.36632	0.00018911	0.25334	0.00013079	0.61967	0.0003199	516.2506693173425	22.462	0.25889	22.077	21.947	22.206	-0.3852					7	4	2	0	0	0	0.11363	1	7935	7935		55.503	30.103	1	44348000			21113	4456	13410	13474	20282	20282					-0.02744548473674513
MENRPSVQA	9	Unmodified	_MENRPSVQA_					0	0	0		nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-MSMS	HCT116MG_D190212_S3	3	516.2506713867188	2	516.250566	1030.48658	0.22817	0.00011779	0.093604	4.8323E-05	0.32177	0.00016611	516.2506001787931	21.963	0.41652	21.964	21.781	22.198	0.00074577					12	7	2	0	0	0	0.13424	1	7723	7723		51.415	29.669	1	35820000			21114	4456	13410	13474	20283	20283					-0.02744548473674513
MENRPSVQA	9	Unmodified	_MENRPSVQA_					0	0	0		nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-MATCH	HCT116MG_D190212_S4	4		2	516.250566	1030.48658	0.25719	0.00013278	0.18554	9.5785E-05	0.44273	0.00022856	516.250562984709	22.241	0.25961	22.013	21.884	22.143	-0.22777	-0.0049504	1.6112E-05	NaN	55.503	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7483800			21115	4456	13410	13474							-0.02744548473674513
MENRPSVQA	9	Oxidation (M)	_M(Oxidation (M))ENRPSVQA_		M(1)ENRPSVQA		M(59)ENRPSVQA	0	0	1		nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MSMS	HCT116MG_D190212_S3	3	524.2485961914062	2	524.248023	1046.48149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.726	1	19.786	19.286	20.286	0.05983								0	0	0	0.088354	1	6781	6781		59.368	28.732	1				21116	4456	13410	13475	20284	20284		98			-0.03988852336306081
MENRPSVQA	9	Oxidation (M)	_M(Oxidation (M))ENRPSVQA_		M(1)ENRPSVQA		M(51)ENRPSVQA	0	0	1		nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-MSMS	HCT116MG_D190212_S4	4	524.2481689453125	2	524.248023	1046.48149	0.37438	0.00019627	0.067884	3.5588E-05	0.44226	0.00023186	524.2479600403589	19.996	0.25996	19.802	19.632	19.892	-0.19368					7	4	2	0	0	0	0.13424	1	6826	6826		51.415	20.779	1	1957300			21117	4456	13410	13475	20285	20285		98			-0.03988852336306081
MENRPVETY	9	Unmodified	_MENRPVETY_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ABHD12-PPP2R2A|1|fusion	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	569.7633666992188	2	569.763506	1137.51246	0.3169	0.00018056	0.11075	6.3103E-05	0.42766	0.00024366	569.7635469042513	26.522	0.20798	26.161	26.076	26.284	-0.36164					6	3	2	0	0	0	0.28073	1	9629	9629		32.786	14.639	1	9530600			21118	15	13411	13476	20286	20286					-0.05079699022053319
MENRPVETY	9	Unmodified	_MENRPVETY_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ABHD12-PPP2R2A|1|fusion	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MSMS	HCT116MG_D190212_S3	3	569.7638549804688	2	569.763506	1137.51246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.447	1	26.298	25.798	26.798	-0.14924								0	0	0	0.69431	1	9488	9488		19.362	3.5148	1				21119	15	13411	13476	20287	20287					-0.05079699022053319
MEPGYILHP	9	Unmodified	_MEPGYILHP_					0	0	0			REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	528.76318359375	2	528.762778	1055.511	0.29357	0.00015523	0.22211	0.00011744	0.51568	0.00027267	528.7627827910908	44.122	1.5542	44.044	43.247	44.801	-0.078373					68	29	3	0	0	0	0.36396	1	16902	16902		24.674	0	1	331490000	+		21120	15994	13412	13477	20288	20288					-0.014532883201809454
MEPGYILHP	9	Unmodified	_MEPGYILHP_					0	0	0			REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.8242797851562	2	528.762778	1055.511	0.29357	0.00015523	0.22211	0.00011744	0.51568	0.00027267	528.7627827910908	44.122	1.5542	44.044	43.247	44.801	-0.078373					68	29	3	0	0	0	0.19805	1	16689	16689		24.674	7.7316	1	331490000	+		21121	15994	13412	13477	20289	20289					-0.014532883201809454
MEPGYILHP	9	Unmodified	_MEPGYILHP_					0	0	0			REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2638549804688	2	528.762778	1055.511	0.65156	0.00034452	-0.099195	-5.2451E-05	0.55237	0.00029207	528.7626751040691	44.404	1.6002	44.097	43.238	44.838	-0.30759					72	34	4	0	0	0	0.28709	2	16489	16382;16489		32.117	10.37	1	81323000	+		21122	15994	13412	13477	20290;20291	20291					-0.014532883201809454
MEPGYILHP	9	Unmodified	_MEPGYILHP_					0	0	0			REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	529.2638549804688	2	528.762778	1055.511	0.65156	0.00034452	-0.099195	-5.2451E-05	0.55237	0.00029207	528.7626751040691	44.404	1.6002	44.097	43.238	44.838	-0.30759					72	34	4	0	0	0	0.16999	1	16489	16489		32.117	19.585	1	81323000	+		21123	15994	13412	13477	20292	20292					-0.014532883201809454
MEPGYILHP	9	Unmodified	_MEPGYILHP_					0	0	0			REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	528.7628784179688	2	528.762778	1055.511	0.44591	0.00023578	0.33284	0.00017599	0.77875	0.00041177	528.7628012232933	44.501	0.78904	44.128	43.572	44.361	-0.37342					37	18	3	0	0	0	0.36396	1	16318	16318		24.674	7.7316	1	21042000	+		21124	15994	13412	13477	20293	20293					-0.014532883201809454
MEPSSASSSRE	11	Unmodified	_MEPSSASSSRE_					0	0	0			REV__SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant	REV__SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	584.7672729492188	2	584.25096	1166.48737	0.42602	0.00024891	-0.24925	-0.00014562	0.17678	0.00010328	584.2508006348152	16.038	0.20892	15.703	15.585	15.794	-0.33451					5	3	2	0	0	0	0.35292	1	5357	5357		20.415	5.5763	1	3915600	+		21125	13176	13413	13478	20294	20294					-0.08921798615301668
MEQDNSKAP	9	Unmodified	_MEQDNSKAP_					0	0	0		ENST00000563969.5_1_16:67312069-67312180:+|nuORF	ENST00000563969.5_1_16:67312069-67312180:+|nuORF	ENST00000563969.5_1_16:67312069-67312180:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.22650146484375	2	510.226756	1018.43896	0.30886	0.00015759	-0.48172	-0.00024579	-0.17286	-8.8196E-05	510.2264272814032	16.658	0.31226	16.316	16.152	16.464	-0.34183					9	5	2	0	0	0	0.024226	1	5616	5616		92.201	60.933	1	3754900			21126	8840	13414	13479	20295	20295					-0.06952247464550965
MEQDNSKAP	9	Unmodified	_MEQDNSKAP_					0	0	0		ENST00000563969.5_1_16:67312069-67312180:+|nuORF	ENST00000563969.5_1_16:67312069-67312180:+|nuORF	ENST00000563969.5_1_16:67312069-67312180:+|nuORF	MSMS	HCT116MG_D190212_S3	3	510.2267150878906	2	510.226756	1018.43896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.736	1	15.821	15.321	16.321	0.085423								0	0	0	0.34992	1	5171	5171		36.506	4.2007	1				21127	8840	13414	13479	20296	20296					-0.06952247464550965
MEQELAHAV	9	Unmodified	_MEQELAHAV_					0	0	0		nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	MULTI-MSMS	HCT116MG_D190212_S1	1	514.248291015625	2	514.247492	1026.48043	0.24189	0.00012439	0.80331	0.0004131	1.0452	0.00053749	514.2480535238217	32.059	0.2085	32.059	31.961	32.17	0					6	3	2	0	0	0	0.057285	1	11846	11846		71.134	27.275	1	4216100			21128	1345	13415	13480	20297	20297					-0.03175066705216523
MEQELAHAV	9	Unmodified	_MEQELAHAV_					0	0	0		nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	MULTI-MSMS	HCT116MG_D190212_S2	2	514.2477416992188	2	514.247492	1026.48043	0.12097	6.221E-05	-0.0086206	-4.4331E-06	0.11235	5.7777E-05	514.247601448998	32.354	0.20766	32.124	31.995	32.202	-0.23009					8	3	3	0	0	0	0.069315	1	11993	11993		65.235	21.377	1	32563000			21129	1345	13415	13480	20298	20298					-0.03175066705216523
MEQELAHAV	9	Unmodified	_MEQELAHAV_					0	0	0		nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	MULTI-MSMS	HCT116MG_D190212_S3	3	514.249267578125	2	514.247492	1026.48043	0.17026	8.7555E-05	0.073075	3.7579E-05	0.24333	0.00012513	514.2483226568688	32.403	0.26075	32.124	31.994	32.254	-0.27841					10	4	3	0	0	0	0.034046	1	11886	11886		82.529	42.58	1	8152300			21130	1345	13415	13480	20299	20299					-0.03175066705216523
MEQFVKKY	8	Unmodified	_MEQFVKKY_					0	0	0		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.1654052734375	2	536.778428	1071.5423	0.43121	0.00023146	0.50428	0.00027069	0.93549	0.00050215	536.7784597026193	28.927	0.20524	28.611	28.504	28.709	-0.31613					6	3	2	0	0	0	0.31097	1	10575	10575		16.942	14.883	1	10554000			21131	3335	13416	13481	20300	20300					0.009392847139224614
MEQFVKKY	8	Unmodified	_MEQFVKKY_					0	0	0		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-MATCH	HCT116MG_D190212_S1	1		2	536.778428	1071.5423	0.72159	0.00038734	0.68689	0.00036871	1.4085	0.00075604	536.7784129874693	28.508	0.31967	28.508	28.268	28.588	0	-0.10071	0.00038793	NaN	16.942	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2477900			21132	3335	13416	13481							0.009392847139224614
MEQFVKKY	8	Unmodified	_MEQFVKKY_					0	0	0		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-MATCH	HCT116MG_D190212_S3	3		2	536.778428	1071.5423	0.61972	0.00033265	-0.57143	-0.00030673	0.048284	2.5918E-05	536.7785660276849	28.929	0.26046	28.707	28.525	28.786	-0.22195	0.098535	-0.00096295	NaN	16.942	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5823100			21133	3335	13416	13481							0.009392847139224614
MEQGRVTIA	9	Unmodified	_MEQGRVTIA_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S2	2	502.7637634277344	2	502.763309	1003.51206	0.54441	0.00027371	-0.1061	-5.3343E-05	0.43831	0.00022036	502.763247612228	29.255	0.25529	28.939	28.812	29.067	-0.31613					8	4	2	0	0	0	0.060947	1	10722	10722		69.338	10.659	1	47958000			21134	9427	13417	13482	20301	20301					0.01044926048734851
MEQGRVTIA	9	Unmodified	_MEQGRVTIA_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7630920410156	2	502.763309	1003.51206	0.51144	0.00025713	-0.19725	-9.9168E-05	0.31419	0.00015796	502.7631119560488	29.242	0.3642	29.02	28.838	29.202	-0.22195					10	6	2	0	0	0	0.043159	1	10609	10609		78.06	19.382	1	30601000			21135	9427	13417	13482	20302	20302					0.01044926048734851
MEQGRVTIA	9	Unmodified	_MEQGRVTIA_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S4	4	502.76336669921875	2	502.763309	1003.51206	0.29423	0.00014793	-0.23791	-0.00011961	0.056321	2.8316E-05	502.7631963235229	29.408	0.41577	29.059	28.877	29.293	-0.34921					16	7	4	0	0	0	0.085458	1	10623	10623		61.09	11.157	1	10887000			21136	9427	13417	13482	20303	20303					0.01044926048734851
MEQGRVTIA	9	Oxidation (M)	_M(Oxidation (M))EQGRVTIA_		M(1)EQGRVTIA		M(46)EQGRVTIA	0	0	1		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S3	3	510.7605895996094	2	510.760766	1019.50698	0.27954	0.00014278	-0.11366	-5.8054E-05	0.16588	8.4724E-05	510.760768962615	25.752	0.52128	25.624	25.442	25.963	-0.12795					13	9	2	0	0	0	0.16285	1	9236	9236		45.74	7.7659	1	5356900			21137	9427	13417	13483	20304	20304		145			-0.001993778138739799
MEQLHSLVLP	10	Unmodified	_MEQLHSLVLP_					0	0	0		ENST00000239944.6_1_3:150261692-150261746:-|nuORF	ENST00000239944.6_1_3:150261692-150261746:-|nuORF	ENST00000239944.6_1_3:150261692-150261746:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	583.0459594726562	2	583.815541	1165.61653	0.48677	0.00028418	0.45132	0.00026349	0.93808	0.00054767	583.81535562629	50.991	0.36268	50.812	50.655	51.018	-0.17868					8	6	2	0	0	0	0.26586	1	19549	19549		36.506	2.1045	1	7042300			21138	6779	13418	13484	20305	20305					0.040346278054357754
MEQQAQRPSP	10	Unmodified	_MEQQAQRPSP_					0	0	0		ENST00000562623.1_1_16:50300548-50321995:+|nuORF;ENST00000569265.1_2_16:50313527-50321995:+|nuORF	ENST00000562623.1_1_16:50300548-50321995:+|nuORF	ENST00000562623.1_1_16:50300548-50321995:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	586.2792358398438	2	586.279854	1170.54516	0.43703	0.00025622	-0.60978	-0.0003575	-0.17275	-0.00010128	586.2794526684771	18.172	0.52057	18.248	17.997	18.518	0.076336					15	9	2	0	0	0	0.053324	1	6175	6175		84.738	46.562	1	2549200			21139	8827	13419	13485	20306	20306					-0.03329491899216919
MEQQPTRPP	9	Unmodified	_MEQQPTRPP_					0	0	0		EAF1|p.P166Rfs*2|1|0.03|ENSG00000144597|chr3:15434508-15434509|-/G|frameshift_variant;nc|ENSG00000144597|Q96JC9-2|EAF1;ENSG00000144597|ENST00000396842|EAF1	EAF1|p.P166Rfs*2|1|0.03|ENSG00000144597|chr3:15434508-15434509|-/G|frameshift_variant	EAF1|p.P166Rfs*2|1|0.03|ENSG00000144597|chr3:15434508-15434509|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	542.2572021484375	2	542.266216	1082.51788	0.49057	0.00026602	0.82682	0.00044836	1.3174	0.00071437	542.2664274534312	20.995	0.15543	20.785	20.708	20.863	-0.20959					4	2	2	0	0	0	0.26031	1	7192	7192		34.932	4.2286	1	1215900			21140	747	13420	13486	20307	20307					-0.02007975439596521
MEQQPTRPP	9	Unmodified	_MEQQPTRPP_					0	0	0		EAF1|p.P166Rfs*2|1|0.03|ENSG00000144597|chr3:15434508-15434509|-/G|frameshift_variant;nc|ENSG00000144597|Q96JC9-2|EAF1;ENSG00000144597|ENST00000396842|EAF1	EAF1|p.P166Rfs*2|1|0.03|ENSG00000144597|chr3:15434508-15434509|-/G|frameshift_variant	EAF1|p.P166Rfs*2|1|0.03|ENSG00000144597|chr3:15434508-15434509|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	542.2666015625	2	542.266216	1082.51788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.09	1	20.88	20.38	21.38	-0.20959								0	0	0	0.59795	1	7260	7260		24.021	3.5669	1				21141	747	13420	13486	20308	20308					-0.02007975439596521
MEQQTLSIA	9	Unmodified	_MEQQTLSIA_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	510.7552795410156	2	510.755149	1019.49575	0.03181	1.6247E-05	0.35013	0.00017883	0.38194	0.00019508	510.7552927430098	38.732	0.52031	38.43	38.248	38.768	-0.30137					21	9	3	0	0	0	0.13316	1	14353	14353		51.63	0	1	45014000			21142	1949	13421	13487	20309	20309					-0.013221999080087699
MEQQTLSIA	9	Unmodified	_MEQQTLSIA_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1020.5026245117188	1	1020.50302	1019.49575	0.49274	0.00050284	-0.095067	-9.7016E-05	0.39767	0.00040582	1020.5027623636445	38.732	0.31276	38.43	38.248	38.561	-0.30137					9	5	2	0	0	0	0.12205	1	14366	14366		53.833	0	1	6987600			21143	1949	13421	13487	20310	20310					-0.013221999080087699
MEQQTLSIA	9	Unmodified	_MEQQTLSIA_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	510.7557373046875	2	510.755149	1019.49575	0.11506	5.8769E-05	0.3008	0.00015363	0.41586	0.0002124	510.7552869347085	38.795	0.35863	38.414	38.232	38.591	-0.38163					14	6	3	0	0	0	0.13316	1	14228	14228		51.63	0	1	16811000			21144	1949	13421	13487	20311	20311					-0.013221999080087699
MEQQTLSIA	9	Unmodified	_MEQQTLSIA_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1020.50302	1019.49575	0.71924	0.00073398	-0.91413	-0.00093288	-0.1949	-0.00019889	1020.5025802078055	38.492	0.21331	38.408	38.278	38.492	-0.084618	-0.011276	-0.00067656	NaN	53.833	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12957000			21145	1949	13421	13487							-0.013221999080087699
MEQQTLSIA	9	Unmodified	_MEQQTLSIA_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	510.755149	1019.49575	0.24615	0.00012572	-0.091896	-4.6936E-05	0.15425	7.8785E-05	510.7551733825868	38.492	0.37032	38.408	38.227	38.597	-0.084618	-0.009528	-0.00034347	NaN	51.63	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25680000			21146	1949	13421	13487							-0.013221999080087699
MEQQTLSIAKA	11	Unmodified	_MEQQTLSIAKA_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	610.8241577148438	2	610.321188	1218.62782	0.5673	0.00034623	0.25951	0.00015838	0.8268	0.00050461	610.3207043941201	33.308	0.24514	33.018	32.955	33.2	-0.29013					7	5	2	0	0	0	0.29187	1	12237	12237		64.927	0	1	6716200			21147	1949	13422	13488	20312	20312					0.02725405108958512
MEQQTLSIAKA	11	Unmodified	_MEQQTLSIAKA_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	610.321188	1218.62782	0.8321	0.00050785	0.2241	0.00013677	1.0562	0.00064462	610.3213281467343	33.201	0.20779	32.996	32.85	33.058	-0.20572	-0.011036	-2.2601E-06	NaN	64.927	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19122000			21148	1949	13422	13488							0.02725405108958512
MEQRGQNAP	9	Unmodified	_MEQRGQNAP_					0	0	0		nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B;ENST00000519028.1_1_8:22900630-22926407:-|nuORF;nc|ENSG00000120889|O14763-3|TNFRSF10B;TNFRSF10B|p.K181Nfs*17|1|0.22|ENSG00000120889|chr8:23028533-23028536|TTCT/-|frameshift_variant	nc|ENSG00000120889|O14763-2|TNFRSF10B	nc|ENSG00000120889|O14763-2|TNFRSF10B	MULTI-MSMS	HCT116MG_D190212_S1	1	515.7406616210938	2	515.740365	1029.46618	0.36285	0.00018713	0.10783	5.561E-05	0.47067	0.00024274	515.7403489801547	16.101	0.46871	16.101	15.952	16.421	0					12	8	2	0	0	0	0.071914	1	5422	5422		63.961	31.655	1	2267600			21149	2716	13423	13489	20313	20313					-0.0473771913350447
MEQRGQNAP	9	Unmodified	_MEQRGQNAP_					0	0	0		nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B;ENST00000519028.1_1_8:22900630-22926407:-|nuORF;nc|ENSG00000120889|O14763-3|TNFRSF10B;TNFRSF10B|p.K181Nfs*17|1|0.22|ENSG00000120889|chr8:23028533-23028536|TTCT/-|frameshift_variant	nc|ENSG00000120889|O14763-2|TNFRSF10B	nc|ENSG00000120889|O14763-2|TNFRSF10B	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7404174804688	2	515.740365	1029.46618	0.18817	9.7045E-05	0.078662	4.0569E-05	0.26683	0.00013761	515.7403723436177	16.363	0.88587	16.022	15.786	16.672	-0.34183					39	16	3	0	0	0	0.014023	2	5502	5502;5575		103.42	63.47	1	26127000			21150	2716	13423	13489	20314;20315	20314					-0.0473771913350447
MEQRGQNAP	9	Unmodified	_MEQRGQNAP_					0	0	0		nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B;ENST00000519028.1_1_8:22900630-22926407:-|nuORF;nc|ENSG00000120889|O14763-3|TNFRSF10B;TNFRSF10B|p.K181Nfs*17|1|0.22|ENSG00000120889|chr8:23028533-23028536|TTCT/-|frameshift_variant	nc|ENSG00000120889|O14763-2|TNFRSF10B	nc|ENSG00000120889|O14763-2|TNFRSF10B	MULTI-MSMS	HCT116MG_D190212_S3	3	515.740478515625	2	515.740365	1029.46618	0.22064	0.00011379	-0.22144	-0.00011421	-0.00080005	-4.1262E-07	515.7403554860487	15.352	0.62492	15.436	15.298	15.923	0.08359					30	11	4	0	0	0	0.016744	1	5039	5039		99.755	59.806	1	7860800			21151	2716	13423	13489	20316	20316					-0.0473771913350447
MEQSPDMHNA	10	Oxidation (M)	_M(Oxidation (M))EQSPDMHNA_		M(1)EQSPDMHNA		M(63)EQSPDM(-63)HNA	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S1	1	588.2267456054688	2	588.22643	1174.43831	0.49661	0.00029212	-0.21766	-0.00012803	0.27895	0.00016409	588.2262444966548	18.949	0.3128	18.949	18.766	19.079	0					8	5	2	0	0	0	0.15757	1	6569	6569		63.227	36.344	2	3973400			21152	2861	13424	13490	20317	20317		62;63			-0.14193410175880672
MEQSPDMHNA	10	Oxidation (M)	_MEQSPDM(Oxidation (M))HNA_		MEQSPDM(1)HNA		M(-110)EQSPDM(110)HNA	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S2	2	588.2265625	2	588.22643	1174.43831	0.52383	0.00030813	-0.23749	-0.0001397	0.28633	0.00016843	588.226315592312	16.422	0.46921	16.08	15.891	16.36	-0.34183					16	8	3	0	0	0	0.023414	1	5524	5524		114.19	56.464	2	15050000			21153	2861	13424	13490	20318	20318		62;63			-0.14193410175880672
MEQSPDMHNA	10	Oxidation (M)	_M(Oxidation (M))EQSPDMHNA_		M(1)EQSPDMHNA		M(150)EQSPDM(-150)HNA	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S2	2	588.22607421875	2	588.22643	1174.43831	0.56465	0.00033214	-0.44373	-0.00026102	0.12092	7.1127E-05	588.2262764514359	19.344	0.36421	18.974	18.836	19.2	-0.3695					13	6	3	0	0	0	0.0083525	1	6709	6709		158.08	118.13	2	17848000			21154	2861	13424	13490	20319	20319		62;63			-0.14193410175880672
MEQSPDMHNA	10	Oxidation (M)	_MEQSPDM(Oxidation (M))HNA_		MEQSPDM(1)HNA		M(-92)EQSPDM(92)HNA	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S3	3	588.227783203125	2	588.22643	1174.43831	0.50165	0.00029509	0.098242	5.7789E-05	0.59989	0.00035287	588.2264655226328	15.605	0.41683	15.691	15.508	15.925	0.085423					15	7	3	0	0	0	0.040924	1	5106	5106		93.938	51.983	2	6587600			21155	2861	13424	13490	20320	20320		62;63			-0.14193410175880672
MEQSPDMHNA	10	Oxidation (M)	_M(Oxidation (M))EQSPDMHNA_		M(1)EQSPDMHNA		M(180)EQSPDM(-180)HNA	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S3	3	588.2266235351562	2	588.22643	1174.43831	0.50565	0.00029744	-0.24618	-0.00014481	0.25948	0.00015263	588.2264369694465	18.735	0.46844	18.804	18.615	19.083	0.069159					19	8	4	0	0	0	0.00010848	1	6380	6380		195.04	158.91	2	13988000			21156	2861	13424	13490	20321	20321		62;63			-0.14193410175880672
MEQSPDMHNA	10	Oxidation (M)	_MEQSPDM(Oxidation (M))HNA_		MEQSPDM(1)HNA		M(-58)EQSPDM(58)HNA	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S4	4	588.226318359375	2	588.22643	1174.43831	-0.069641	-4.0965E-05	0.48633	0.00028607	0.41669	0.00024511	588.2265383698763	15.649	0.41562	15.487	15.305	15.721	-0.16173					9	7	2	0	0	0	0.20425	1	5069	5069		59.052	30.558	2	2816500			21157	2861	13424	13490	20322	20322		62;63			-0.14193410175880672
MEQSPDMHNA	10	Oxidation (M)	_M(Oxidation (M))EQSPDMHNA_		M(1)EQSPDMHNA		M(130)EQSPDM(-130)HNA	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S4	4	588.2266845703125	2	588.22643	1174.43831	0.51448	0.00030263	-0.31315	-0.0001842	0.20133	0.00011843	588.2263179551489	19.015	0.41593	18.828	18.661	19.077	-0.18674					15	7	3	0	0	0	0.011036	2	6411	6411;6444		143.21	108.81	2	6081600			21158	2861	13424	13490	20323;20324	20323		62;63			-0.14193410175880672
MEQSPDMHNA	10	Unmodified	_MEQSPDMHNA_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S1	1	580.2294311523438	2	580.228973	1158.44339	0.51466	0.00029862	-0.36257	-0.00021038	0.15209	8.8247E-05	580.2289965506234	21.515	0.20848	21.515	21.385	21.594	0					12	3	4	0	0	0	0.011728	1	7576	7576		139.78	101.81	1	30271000			21159	2861	13424	13491	20325	20325					-0.1294910631327184
MEQSPDMHNA	10	Unmodified	_MEQSPDMHNA_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S2	2	580.228759765625	2	580.228973	1158.44339	0.33259	0.00019298	-0.3886	-0.00022548	-0.056011	-3.2499E-05	580.2289879625778	21.891	0.41661	21.506	21.323	21.739	-0.38503					26	7	6	0	0	0	0.0052575	1	7725	7725		166.77	126.82	1	298340000			21160	2861	13424	13491	20326	20326					-0.1294910631327184
MEQSPDMHNA	10	Unmodified	_MEQSPDMHNA_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S2	2	1159.451904296875	1	1159.45067	1158.44339	0.347	0.00040233	-0.14754	-0.00017107	0.19946	0.00023126	1159.4512191236158	21.89	0.20844	21.505	21.375	21.583	-0.38503					8	3	3	0	0	0	8.2909E-07	1	7757	7757		210.93	170.98	1	12011000			21161	2861	13424	13491	20327	20327					-0.1294910631327184
MEQSPDMHNA	10	Unmodified	_MEQSPDMHNA_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S3	3	580.229248046875	2	580.228973	1158.44339	0.38524	0.00022353	-0.30192	-0.00017518	0.083326	4.8348E-05	580.2289612586761	21.465	0.47634	21.483	21.271	21.747	0.018446					29	8	5	0	0	0	0.016452	2	7492	7458;7492		128.57	82.833	1	123870000			21162	2861	13424	13491	20328;20329	20329					-0.1294910631327184
MEQSPDMHNA	10	Unmodified	_MEQSPDMHNA_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	HCT116MG_D190212_S4	4	580.2294311523438	2	580.228973	1158.44339	0.26503	0.00015378	-0.058095	-3.3708E-05	0.20693	0.00012007	580.2289948916658	21.721	0.36316	21.503	21.322	21.685	-0.21832					21	6	5	0	0	0	0.28966	1	7509	7509		51.415	37.509	1	38388000			21163	2861	13424	13491	20330	20330					-0.1294910631327184
MEQVIFKY	8	Unmodified	_MEQVIFKY_					0	0	0		ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.7739868164062	2	529.272978	1056.5314	0.59215	0.00031341	-0.37033	-0.00019601	0.22182	0.0001174	529.2728164242956	46.705	0.26056	46.391	46.229	46.49	-0.31405					8	4	2	0	0	0	0.2491	1	17524	17524		63.961	20.102	1	7581800			21164	2443	13425	13492	20331	20331					0.0053988233964901156
MEQVIFKY	8	Unmodified	_MEQVIFKY_					0	0	0		ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	529.7747802734375	2	529.272978	1056.5314	0.57878	0.00030633	-0.016105	-8.5238E-06	0.56268	0.00029781	529.2728644071799	46.778	0.20796	46.406	46.276	46.484	-0.37134					6	3	2	0	0	0	0.33298	1	17295	17295		56.177	27.69	1	3753600			21165	2443	13425	13492	20332	20332					0.0053988233964901156
MEQVIFKY	8	Unmodified	_MEQVIFKY_					0	0	0		ENST00000489779.1_1_2:114684960-114691984:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	ENST00000489779.1_1_2:114684960-114691984:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	529.272978	1056.5314	0.43425	0.00022984	-0.39557	-0.00020937	0.038675	2.047E-05	529.2729143068893	46.415	0.15517	46.415	46.285	46.44	0	0.010609	-0.00020277	NaN	63.961	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6021600			21166	2443	13425	13492							0.0053988233964901156
MERNHKRKEG	10	Unmodified	_MERNHKRKEG_					0	0	0		ENST00000473648.1_1_3:119209263-119211282:+|nuORF	ENST00000473648.1_1_3:119209263-119211282:+|nuORF	ENST00000473648.1_1_3:119209263-119211282:+|nuORF	MSMS	HCT116MG_D190212_S2	2	428.8912658691406	3	428.891172	1283.65169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.816	1	63.693	63.193	64.193	-0.12264								0	0	0	0.97061	1	24731	24731		0.12286	0	1				21167	8181	13426	13493	20333	20333					0.02120683385942357
MERQGDVY	8	Unmodified	_MERQGDVY_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR	nc|ENSG00000160710|P55265-5|ADAR;nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	HCT116MG_D190212_S2	2	499.2233581542969	2	499.224017	996.43348	0.53432	0.00026675	-0.28306	-0.00014131	0.25126	0.00012543	499.22376309819475	23.865	0.20851	23.482	23.403	23.612	-0.38324					6	3	2	0	0	0	0.71258	1	8561	8561		21.537	5.6898	1	6005100			21168	4461;9517	13427	13494	20334	20334					-0.06487926256352239
MERRRERRERR	11	Unmodified	_MERRRERRERR_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MSMS	HCT116MG_D190212_S3	3	544.2495727539062	3	543.969478	1628.88661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.041	1	30.78	30.28	31.28	-0.26071								0	0	0	0.96192	1	11326	11326		0.08335	0.010087	1				21169	4450	13428	13495	20335	20335					0.09731793914215814
MESAAAASA	9	Unmodified	_MESAAAASA_					0	0	0		ENST00000309993.2_1_3:135914496-135914583:-|nuORF	ENST00000309993.2_1_3:135914496-135914583:-|nuORF	ENST00000309993.2_1_3:135914496-135914583:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	808.3511352539062	1	808.350545	807.343268	0.79892	0.00064581	-0.10922	-8.8287E-05	0.6897	0.00055752	808.350247432798	20.075	0.25944	19.7	19.558	19.817	-0.37503					6	4	2	0	0	0	0.035914	1	7029	7029		81.613	14.269	1	4771700			21170	7046	13429	13496	20336	20336					-0.06810975584789958
MESAAAASA	9	Unmodified	_MESAAAASA_					0	0	0		ENST00000309993.2_1_3:135914496-135914583:-|nuORF	ENST00000309993.2_1_3:135914496-135914583:-|nuORF	ENST00000309993.2_1_3:135914496-135914583:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	808.3511962890625	1	808.350545	807.343268	0.87853	0.00071016	-0.93923	-0.00075923	-0.060701	-4.9068E-05	808.3497913016721	19.627	0.26037	19.687	19.542	19.802	0.05983					6	4	2	0	0	0	0.11731	1	6766	6766		54.774	8.7526	1	2148300			21171	7046	13429	13496	20337	20337					-0.06810975584789958
MESAPLPAP	9	Unmodified	_MESAPLPAP_					0	0	0			REV__ENST00000576872.1_1_17:4872867-4875829:-|nuORF	REV__ENST00000576872.1_1_17:4872867-4875829:-|nuORF	MSMS	HCT116MG_D190212_S2	2	456.7283020019531	2	456.728403	911.442254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.882	1	33.698	33.198	34.198	-0.18458								0	0	0	0.46961	1	12587	12587		30.225	4.8255	1		+		21172	11349	13430	13497	20338	20338					-0.0170095261988763
MESDDARAA	9	Unmodified	_MESDDARAA_					0	0	0		ENST00000509033.1_1_4:140036086-140036467:-|nuORF;ENSG00000173457|ENST00000309318|PPP1R14B	ENST00000509033.1_1_4:140036086-140036467:-|nuORF	ENST00000509033.1_1_4:140036086-140036467:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	483.2035827636719	2	483.203281	964.392009	0.15761	7.6159E-05	0.56214	0.00027163	0.71975	0.00034779	483.2034539431737	16.572	0.3644	16.23	16.1	16.464	-0.34183					11	6	2	0	0	0	0.17622	1	5591	5591		43.772	18.781	1	24824000			21173	5288	13431	13498	20339	20339					-0.09161107015700054
MESDDARAA	9	Unmodified	_MESDDARAA_					0	0	0		ENST00000509033.1_1_4:140036086-140036467:-|nuORF;ENSG00000173457|ENST00000309318|PPP1R14B	ENST00000509033.1_1_4:140036086-140036467:-|nuORF	ENST00000509033.1_1_4:140036086-140036467:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	965.4002075195312	1	965.399286	964.392009	0.60469	0.00058377	0.30382	0.00029331	0.90851	0.00087708	965.3993975159806	16.572	0.2081	16.23	16.1	16.308	-0.34183					5	3	2	0	0	0	0.10482	1	5614	5614		57.249	35.502	1	4979900			21174	5288	13431	13498	20340	20340					-0.09161107015700054
MESDDARAA	9	Unmodified	_MESDDARAA_					0	0	0		ENST00000509033.1_1_4:140036086-140036467:-|nuORF;ENSG00000173457|ENST00000309318|PPP1R14B	ENST00000509033.1_1_4:140036086-140036467:-|nuORF	ENST00000509033.1_1_4:140036086-140036467:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.20355224609375	2	483.203281	964.392009	0.16217	7.8362E-05	0.14538	7.0246E-05	0.30755	0.00014861	483.2033749120742	15.71	0.20855	15.795	15.665	15.873	0.085423					6	3	2	0	0	0	0.35842	1	5184	5184		24.991	1.2012	1	2566100			21175	5288	13431	13498	20341	20341					-0.09161107015700054
MESHAIGKKP	10	Unmodified	_MESHAIGKKP_					0	0	0		ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2926025390625	2	549.292233	1096.56991	0.42765	0.0002349	-1.9951	-0.0010959	-1.5675	-0.00086102	549.2917651555973	16.843	0.46803	16.502	16.152	16.62	-0.34183					15	8	3	0	0	0	0.24695	1	5709	5709		55.235	32.498	1	7956500			21176	4740	13432	13499	20342	20342					0.02549187974182132
MESHSVAQA	9	Unmodified	_MESHSVAQA_					0	0	0		ENST00000553911.1_2_14:23444960-23445931:-|nuORF;ENST00000433118.5_1_2:130917171-130932539:-|nuORF;ENST00000592072.1_1_17:40939341-40946077:+|nuORF	ENST00000553911.1_2_14:23444960-23445931:-|nuORF	ENST00000553911.1_2_14:23444960-23445931:-|nuORF	MSMS	HCT116MG_D190212_S2	2	480.2158508300781	2	480.216192	958.41783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.879	1	18.514	18.014	19.014	-0.36475								0	0	0	0.76575	1	6514	6514		15.847	1.0089	1				21177	7865	13433	13500	20343	20343					-0.06304212773397921
MESLGSSVLP	10	Unmodified	_MESLGSSVLP_					0	0	0			REV__ENST00000375695.2_1_X:51644997-51645279:+|nuORF	REV__ENST00000375695.2_1_X:51644997-51645279:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.7535400390625	2	510.257525	1018.5005	0.4671	0.00023834	-0.70858	-0.00036156	-0.24148	-0.00012321	510.25700706037463	36.433	0.25962	36.305	36.174	36.434	-0.12799					7	4	2	0	0	0	0.56527	1	13572	13572		30.637	3.0077	1	18833000	+		21178	15218	13434	13501	20344	20344					-0.008013157652499103
MESPFITSP	9	Unmodified	_MESPFITSP_					0	0	0		ENST00000274030.10_1_4:120160402-120160465:+|nuORF	ENST00000274030.10_1_4:120160402-120160465:+|nuORF	ENST00000274030.10_1_4:120160402-120160465:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1008.4727172851562	1	1008.47066	1007.46338	0.72389	0.00073002	0.34696	0.0003499	1.0708	0.0010799	1008.4707983718737	48.693	0.25397	48.549	48.439	48.693	-0.1437					6	4	2	0	0	0	0.084109	1	18653	18653		61.357	19.263	1	27478000			21179	6927	13435	13502	20345	20345					-0.040049873110206136
MESPFITSP	9	Unmodified	_MESPFITSP_					0	0	0		ENST00000274030.10_1_4:120160402-120160465:+|nuORF	ENST00000274030.10_1_4:120160402-120160465:+|nuORF	ENST00000274030.10_1_4:120160402-120160465:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1008.4716186523438	1	1008.47066	1007.46338	0.82753	0.00083454	0.65808	0.00066365	1.4856	0.0014982	1008.4715135177714	48.986	0.4211	48.67	48.449	48.87	-0.31596					10	7	2	0	0	0	0.042978	1	18420	18420		78.149	27.294	1	5609700			21180	6927	13435	13502	20346	20346					-0.040049873110206136
MESPTKLDV	9	Unmodified	_MESPTKLDV_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	HCT116MG_D190212_S2	2	510.25689697265625	2	510.257525	1018.5005	0.4671	0.00023834	-0.70858	-0.00036156	-0.24148	-0.00012321	510.25700706037463	36.433	0.25962	36.305	36.174	36.434	-0.12799					7	4	2	0	0	0	0.037825	1	13636	13636		80.676	32.927	1	18833000			21181	9371	13436	13503	20347	20347					-0.00801315765261279
MESRPPPPP	9	Unmodified	_MESRPPPPP_					0	0	0		ENST00000430014.1_1:144520944-144521145:-|nuORF	ENST00000430014.1_1:144520944-144521145:-|nuORF	ENST00000430014.1_1:144520944-144521145:-|nuORF	MSMS	HCT116MG_D190212_S3	3	504.2535095214844	2	504.252577	1006.4906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.682	1	21.7	21.2	22.2	0.018446								0	0	0	0.08589	1	7567	7567		60.074	2.3519	1				21182	7845	13437	13504	20348	20348					-0.012384589799808055
MESRPPPPP	9	Unmodified	_MESRPPPPP_					0	0	0		ENST00000430014.1_1:144520944-144521145:-|nuORF	ENST00000430014.1_1:144520944-144521145:-|nuORF	ENST00000430014.1_1:144520944-144521145:-|nuORF	MSMS	HCT116MG_D190212_S3	3	504.2369384765625	2	504.252577	1006.4906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.802	1	21.805	21.305	22.305	0.0022564								0	0	0	0.42657	1	7616	7616		32.305	1.6689	1				21183	7845	13437	13504	20349	20349					-0.012384589799808055
MESRPPPPP	9	Unmodified	_MESRPPPPP_					0	0	0		ENST00000430014.1_1:144520944-144521145:-|nuORF	ENST00000430014.1_1:144520944-144521145:-|nuORF	ENST00000430014.1_1:144520944-144521145:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	504.2530822753906	2	504.252577	1006.4906	0.2957	0.00014911	0.23506	0.00011853	0.53075	0.00026763	504.25273867093443	22.034	0.88252	21.806	21.261	22.143	-0.22777					25	16	2	0	0	0	0.22946	1	7601	7601		38.176	1.6694	1	4219700			21184	7845	13437	13504	20350	20350					-0.012384589799808055
MESRSVAQA	9	Unmodified	_MESRSVAQA_					0	0	0		ENST00000545748.5_1_12:52431545-52431905:+|nuORF;ENST00000481374.1_1_1:76216171-76216535:+|nuORF;AluSg7_dup3470|chr7:92112548-92112847:+|1.1476481431393448|0.0120808203020236|6.57|479.0|16|2|anti-sense;ENST00000548942.1_1_12:50527593-50529244:-|nuORF;ENST00000481865.5_1_3:195611475-195611958:-|nuORF;ENST00000435930.1_1_9:139731025-139731532:+|nuORF;ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000261832|Q13286-5|CLN3;ZNF283|p.W330Gfs*10|3|0.41|ENSG00000167637|chr19:43847583-43847583|T/-|frameshift_variant;ENSG00000167637|ENST00000618787|ZNF283	ENST00000545748.5_1_12:52431545-52431905:+|nuORF	ENST00000545748.5_1_12:52431545-52431905:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	489.73724365234375	2	489.737291	977.460029	0.24411	0.00011955	-0.17875	-8.7543E-05	0.065351	3.2005E-05	489.7371975256814	19.283	0.20834	18.914	18.784	18.992	-0.3695					5	3	2	0	0	0	0.39921	1	6708	6708		22.658	3.2961	1	6482700			21185	8722	13438	13505	20351	20351					-0.029602373650277514
MESVMVKY	8	Unmodified	_MESVMVKY_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;ENST00000576114.1_1_17:7405853-7406021:+|nuORF	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	HCT116MG_D190212_S2	2	493.73797607421875	2	493.737914	985.461275	0.099114	4.8936E-05	0.6041	0.00029827	0.70321	0.0003472	493.7381141914385	37.734	0.20554	37.631	37.537	37.743	-0.10318					5	3	2	0	0	0	0.61955	1	14199	14199		30.637	12.502	1	17710000			21186	5627	13439	13506	20352	20352					-0.03203739320474597
METAAAVAA	9	Unmodified	_METAAAVAA_					0	0	0		ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	834.403076171875	1	834.40258	833.395304	0.93455	0.00077979	0.065965	5.5041E-05	1.0005	0.00083483	834.402591562806	28.034	0.26009	28.034	27.904	28.164	0					8	4	2	0	0	0	0.031005	1	10202	10202		85.357	3.4927	1	24435000			21187	6959	13440	13507	20353	20353					-0.02805812171038724
METAAAVAA	9	Unmodified	_METAAAVAA_					0	0	0		ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	834.4027709960938	1	834.40258	833.395304	0.78267	0.00065306	0.20791	0.00017348	0.99058	0.00082654	834.4025134348445	28.389	0.36173	28.059	27.874	28.236	-0.32987					14	6	3	0	0	0	0.031005	1	10352	10352		85.357	3.4927	1	172640000			21188	6959	13440	13507	20354	20354					-0.02805812171038724
METAAAVAA	9	Unmodified	_METAAAVAA_					0	0	0		ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	834.4035034179688	1	834.40258	833.395304	0.81959	0.00068387	0.15705	0.00013105	0.97665	0.00081492	834.4026194103816	28.409	0.62527	28.203	28.02	28.645	-0.20593					27	11	4	0	0	0	0.031005	1	10260	10260		85.357	3.4927	1	81776000			21189	6959	13440	13507	20355	20355					-0.02805812171038724
METAAAVAA	9	Unmodified	_METAAAVAA_					0	0	0		ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	834.4036254882812	1	834.40258	833.395304	0.71579	0.00059726	0.4165	0.00034753	1.1323	0.00094479	834.4027914456119	28.526	0.46744	28.194	28.012	28.479	-0.33138					14	8	2	0	0	0	0.050578	1	10248	10248		74.423	3.7072	1	19187000			21190	6959	13440	13507	20356	20356					-0.02805812171038724
METAAAVAA	9	Oxidation (M)	_M(Oxidation (M))ETAAAVAA_		M(1)ETAAAVAA		M(97)ETAAAVAA	0	0	1		ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	850.3972778320312	1	850.397495	849.390218	0.67925	0.00057763	-0.20716	-0.00017617	0.47209	0.00040146	850.397026170492	23.5	0.41529	23.117	22.988	23.403	-0.38324					11	7	2	0	0	0	0.019399	1	8402	8402		97.075	57.117	1	22954000			21191	6959	13440	13508	20357	20357		140			-0.04050116033647555
METAAAVAA	9	Oxidation (M)	_M(Oxidation (M))ETAAAVAA_		M(1)ETAAAVAA		M(97)ETAAAVAA	0	0	1		ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	850.398193359375	1	850.397495	849.390218	0.69274	0.0005891	0.054919	4.6703E-05	0.74765	0.0006358	850.3973572573879	23.253	0.41703	23.213	23.031	23.448	-0.03968					13	7	3	0	0	0	0.019399	1	8204	8204		97.075	54.98	1	12064000			21192	6959	13440	13508	20358	20358		140			-0.04050116033647555
METAAAVAA	9	Oxidation (M)	_M(Oxidation (M))ETAAAVAA_		M(1)ETAAAVAA		M(97)ETAAAVAA	0	0	1		ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	ENST00000290277.10_1_X:47420617-47420644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	850.3977661132812	1	850.397495	849.390218	0.54747	0.00046557	0.60475	0.00051427	1.1522	0.00097984	850.3976341103615	23.389	0.41737	23.142	22.958	23.376	-0.24775					11	7	2	0	0	0	0.019399	1	8192	8192		97.075	46.22	1	7721000			21193	6959	13440	13508	20359	20359		140			-0.04050116033647555
METCCPCCCC	10	Unmodified	_METCCPCCCC_					0	0	0		ENST00000599649.5_1_19:52149845-52150035:-|nuORF	ENST00000599649.5_1_19:52149845-52150035:-|nuORF	ENST00000599649.5_1_19:52149845-52150035:-|nuORF	MSMS	HCT116MG_D190212_S2	2	548.2579956054688	2	548.131872	1094.24919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.571	1	28.241	27.741	28.741	-0.32987								0	0	0	0.97116	1	10427	10427		0	0	1				21194	9081	13441	13509	20360	20360					-0.29416304652750114
METHIMHTF	9	Unmodified	_METHIMHTF_					0	0	0		ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	573.7572631835938	2	573.757169	1145.49979	0.35237	0.00020218	-0.18259	-0.00010476	0.16978	9.7411E-05	573.7570880291811	36.286	0.26726	36.286	36.15	36.417	0					9	4	3	0	0	0	0.0035631	1	13550	13550		214.14	152.78	1	15152000			21195	3321	13442	13510	20361	20361					-0.06714433685942822
METHIMHTF	9	Unmodified	_METHIMHTF_					0	0	0		ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MSMS	HCT116MG_D190212_S1	1	382.8400573730469	3	382.840538	1145.49979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.372	1	36.372	35.872	36.872	0								0	0	0	0.16977	1	13557	13557		49.554	32.112	1				21196	3321	13442	13510	20362	20362					-0.06714433685942822
METHIMHTF	9	Unmodified	_METHIMHTF_					0	0	0		ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	573.7575073242188	2	573.757169	1145.49979	0.55136	0.00031635	-0.034142	-1.9589E-05	0.51722	0.00029676	573.7571329673842	36.328	0.51826	36.2	36.019	36.537	-0.12799					17	9	4	0	0	0	0.0019609	1	13590	13590		232.51	164.43	1	99593000			21197	3321	13442	13510	20363	20363					-0.06714433685942822
METHIMHTF	9	Unmodified	_METHIMHTF_					0	0	0		ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	383.1748962402344	3	382.840538	1145.49979	0.097691	3.74E-05	0.14079	5.3902E-05	0.23849	9.1302E-05	382.8405589529404	36.328	0.31066	36.2	36.071	36.382	-0.12799					11	5	3	0	0	0	0.0063854	1	13593	13593		125.53	106.17	1	56816000			21198	3321	13442	13510	20364	20364					-0.06714433685942822
METHIMHTF	9	Unmodified	_METHIMHTF_					0	0	0		ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	573.7572631835938	2	573.757169	1145.49979	0.27537	0.00015799	-0.11701	-6.7134E-05	0.15836	9.0859E-05	573.7571056731607	36.524	0.20845	36.223	36.093	36.301	-0.30113					6	3	2	0	0	0	0.0046822	1	13522	13522		172.91	122.97	1	7294600			21199	3321	13442	13510	20365	20365					-0.06714433685942822
METHIMHTF	9	Unmodified	_METHIMHTF_					0	0	0		ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		3	382.840538	1145.49979	-0.14811	-5.6704E-05	-0.2283	-8.7403E-05	-0.37642	-0.00014411	382.840343464272	36.299	0.21484	36.299	36.15	36.365	0	0.048751	-0.00052973	NaN	125.53	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7920300			21200	3321	13442	13510							-0.06714433685942822
METHIMHTF	9	Unmodified	_METHIMHTF_					0	0	0		ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	382.840538	1145.49979	-0.26397	-0.00010106	0.27695	0.00010603	0.012974	4.967E-06	382.84061062353703	36.553	0.20845	36.251	36.093	36.301	-0.30113	0.0013337	5.0553E-05	NaN	125.53	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2253500			21201	3321	13442	13510							-0.06714433685942822
METKIKNY	8	Unmodified	_METKIKNY_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	HCT116MG_D190212_S1	1	513.7691650390625	2	513.76806	1025.52157	0.38437	0.00019748	0.87158	0.00044779	1.256	0.00064527	513.7684973846824	22.559	0.20855	22.559	22.428	22.637	0					8	3	3	0	0	0	0.0065428	1	7996	7996		183.04	90.217	1	21205000			21202	2932	13443	13511	20366	20366					0.009826943342659433
METKIKNY	8	Unmodified	_METKIKNY_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7681884765625	2	513.76806	1025.52157	0.16637	8.5478E-05	0.18934	9.7278E-05	0.35572	0.00018276	513.7681241442152	23.137	0.36389	22.752	22.622	22.986	-0.3852					12	6	3	0	0	0	0.0082805	1	8236	8236		166.45	81.091	1	89029000			21203	2932	13443	13511	20367	20367					0.009826943342659433
METKIKNY	8	Unmodified	_METKIKNY_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	HCT116MG_D190212_S3	3	513.7682495117188	2	513.76806	1025.52157	0.15563	7.9958E-05	0.37749	0.00019394	0.53312	0.0002739	513.7681077705621	22.484	0.26054	22.465	22.335	22.595	-0.018869					10	4	3	0	0	0	0.017913	1	7897	7897		155.03	69.669	1	19311000			21204	2932	13443	13511	20368	20368					0.009826943342659433
METKIKNY	8	Unmodified	_METKIKNY_					0	0	0		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MULTI-MSMS	HCT116MG_D190212_S4	4	513.7682495117188	2	513.76806	1025.52157	0.11159	5.7333E-05	0.65711	0.0003376	0.7687	0.00039493	513.7683051878802	22.814	0.26126	22.576	22.445	22.706	-0.23758					6	4	2	0	0	0	0.061818	1	7983	7983		110.67	53.203	1	3905700			21205	2932	13443	13511	20369	20369					0.009826943342659433
METKIKNY	8	Oxidation (M)	_M(Oxidation (M))ETKIKNY_		M(1)ETKIKNY		M(66)ETKIKNY	0	0	1		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MSMS	HCT116MG_D190212_S1	1	521.765625	2	521.765517	1041.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.812	1	18.812	18.312	19.312	0								0	0	0	0.20922	1	6488	6488		66.457	28.483	1				21206	2932	13443	13512	20370	20370		67			-0.00261609528365625
METKIKNY	8	Oxidation (M)	_M(Oxidation (M))ETKIKNY_		M(1)ETKIKNY		M(42)ETKIKNY	0	0	1		ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	ENSG00000126267|ENST00000649813|COX6B1	MSMS	HCT116MG_D190212_S2	2	521.7656860351562	2	521.765517	1041.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.459	1	19.09	18.59	19.59	-0.3695								0	0	0	0.52116	1	6748	6748		41.956	12.874	1				21207	2932	13443	13512	20371	20371		67			-0.00261609528365625
METKKDTAQ	9	Unmodified	_METKKDTAQ_					0	0	0		SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant;ENSG00000144671|ENST00000448498|SLC22A14;ENST00000496724.1_1_3:38347478-38348849:+|nuORF;SLC22A14|p.A280Rfs*13|1|0.08|ENSG00000144671|chr3:38309015-38309016|-/CGGGACACTGCTTTTTT|frameshift_variant	SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant	SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	525.757080078125	2	526.258056	1050.50156	0.19726	0.00010381	1.3386	0.00070446	1.5359	0.00080827	526.2591765413564	37.813	0.40968	37.718	37.394	37.804	-0.094494					12	7	3	0	0	0	0.2025	1	14174	14174		32.305	8.2849	1	23711000			21208	3875	13444	13513	20372	20372					-0.021671013963668884
METLLGGL	8	Unmodified	_METLLGGL_					0	0	0		LRFN2|p.S95Pfs*37|1|0.28|ENSG00000156564|chr6:40432831-40432831|A/-|frameshift_variant;LRFN2|p.N242*|1|0.28|ENSG00000156564|chr6:40432391-40432392|-/C|frameshift_variant;LRFN2|p.W640Lfs*15|1|0.41|ENSG00000156564|chr6:40392395-40392396|-/G|frameshift_variant;ENSG00000156564|ENST00000338305|LRFN2	LRFN2|p.S95Pfs*37|1|0.28|ENSG00000156564|chr6:40432831-40432831|A/-|frameshift_variant	LRFN2|p.S95Pfs*37|1|0.28|ENSG00000156564|chr6:40432831-40432831|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	417.2264709472656	2	417.225497	832.43644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.856	1	16.515	16.015	17.015	-0.34183								0	0	0	0.77419	1	5700	5700		24.674	0	1				21209	4291	13445	13514	20373	20373					0.013519488684551106
METPWLRRP	9	Unmodified	_METPWLRRP_					0	0	0		ENST00000371733.7_1_1:51984878-51984917:-|nuORF	ENST00000371733.7_1_1:51984878-51984917:-|nuORF	ENST00000371733.7_1_1:51984878-51984917:-|nuORF	MSMS	HCT116MG_D190212_S2	2	395.878173828125	3	395.878092	1184.61245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.629	1	40.559	40.059	41.059	-0.069626								0	0	0	0.11662	1	15327	15327		53.404	35.541	1				21210	7445	13446	13515	20374	20374					0.027525831023922365
METTLLVILIQ	11	Unmodified	_METTLLVILIQ_					0	0	0			REV__nc|ENSG00000170482|Q9UHI7-2|SLC23A1	REV__nc|ENSG00000170482|Q9UHI7-2|SLC23A1	MSMS	HCT116MG_D190212_S1	1	637.3780517578125	2	637.375432	1272.73631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.14	1	58.14	57.64	58.64	0								0	0	0	0.95636	1	22388	22388		2.9952	0	1		+		21211	13304	13447	13516	20375	20375					0.11085196359363181
METTSLLL	8	Unmodified	_METTSLLL_					0	0	0		ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	MULTI-MSMS	HCT116MG_D190212_S2	2	454.244873046875	2	454.243886	906.47322	0.46511	0.00021127	1.4817	0.00067304	1.9468	0.00088431	454.24479251138285	33.467	0.20429	33.274	33.174	33.378	-0.19297					6	3	2	0	0	0	0.60268	1	12444	12444		32.117	0	1	14481000			21212	5954	13448	13517	20376	20376					0.016242006943684828
MEVASVAA	8	Oxidation (M)	_M(Oxidation (M))EVASVAA_		M(1)EVASVAA		M(74)EVASVAA	0	0	1		ENST00000367188.4_1_1:204380617-204380770:-|nuORF	ENST00000367188.4_1_1:204380617-204380770:-|nuORF	ENST00000367188.4_1_1:204380617-204380770:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	793.3762817382812	1	793.376031	792.368755	1.0672	0.0008467	-0.69024	-0.00054762	0.37698	0.00029909	793.3754819128139	25.925	0.41571	25.556	25.343	25.758	-0.36914					11	7	2	0	0	0	0.19622	1	9385	9385		74.396	24.727	1	8834600			21213	7381	13449	13518	20377	20377		141			-0.0357350106235117
MEVASVAA	8	Oxidation (M)	_M(Oxidation (M))EVASVAA_		M(1)EVASVAA		M(86)EVASVAA	0	0	1		ENST00000367188.4_1_1:204380617-204380770:-|nuORF	ENST00000367188.4_1_1:204380617-204380770:-|nuORF	ENST00000367188.4_1_1:204380617-204380770:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	793.3759155273438	1	793.376031	792.368755	0.83411	0.00066176	0.10789	8.5595E-05	0.942	0.00074736	793.3759361966133	25.771	0.46888	25.643	25.39	25.859	-0.12795					13	8	2	0	0	0	0.13911	1	9214	9214		86.121	36.452	1	5004800			21214	7381	13449	13518	20378	20378		141			-0.0357350106235117
MEVASVAAY	9	Unmodified	_MEVASVAAY_					0	0	0		ENST00000367188.4_1_1:204380617-204380770:-|nuORF	ENST00000367188.4_1_1:204380617-204380770:-|nuORF	ENST00000367188.4_1_1:204380617-204380770:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	940.2777709960938	1	940.444445	939.437169	0.78482	0.00073808	0.55191	0.00051904	1.3367	0.0012571	940.4449109121117	40.821	0.20756	40.751	40.673	40.881	-0.069626					5	3	2	0	0	0	0.11731	1	15380	15380		54.774	18.729	1	10920000			21215	7381	13450	13519	20379	20379					-0.03497256482501143
MEVASVAAY	9	Unmodified	_MEVASVAAY_					0	0	0		ENST00000367188.4_1_1:204380617-204380770:-|nuORF	ENST00000367188.4_1_1:204380617-204380770:-|nuORF	ENST00000367188.4_1_1:204380617-204380770:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	940.44482421875	1	940.444445	939.437169	0.68039	0.00063987	-0.46526	-0.00043755	0.21514	0.00020232	940.444122823362	41.054	0.20831	40.752	40.632	40.84	-0.30185					5	3	2	0	0	0	0.11813	1	15276	15276		57.471	35.725	1	3225100			21216	7381	13450	13519	20380	20380					-0.03497256482501143
MEVELPYRY	9	Unmodified	_MEVELPYRY_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	HCT116MG_D190212_S2	2	600.795654296875	2	600.291899	1198.56925	0.82689	0.00049638	3.6709	0.0022036	4.4977	0.0027	600.7972819435988	47.39	0.31025	47.268	47.026	47.336	-0.12175					9	5	2	0	0	0	0.090581	2	18083	18083;18100		60.074	14.334	1	12650000			21217	2949	13451	13520	20381;20382	20381					-0.022096514655459032
MEVEVDGQKF	10	Unmodified	_MEVEVDGQKF_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	HCT116MG_D190212_S1	1	591.2789916992188	2	591.278989	1180.54342	0.46494	0.00027491	0.083815	4.9558E-05	0.54875	0.00032447	591.2788883001806	42.2	0.20741	42.2	42.071	42.278	0					7	3	3	0	0	0	0.0163	1	15934	15934		128.93	86.977	1	32376000			21218	3031	13452	13521	20383	20383					-0.03962545707827303
MEVEVDGQKF	10	Unmodified	_MEVEVDGQKF_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	HCT116MG_D190212_S2	2	591.2796630859375	2	591.278989	1180.54342	0.57532	0.00034018	-0.12874	-7.6121E-05	0.44658	0.00026406	591.2790223135119	42.162	0.57024	42.094	41.913	42.483	-0.068199					18	10	3	0	0	0	0.0034649	1	15953	15953		171.46	123.72	1	174060000			21219	3031	13452	13521	20384	20384					-0.03962545707827303
MEVEVDGQKF	10	Unmodified	_MEVEVDGQKF_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MSMS	HCT116MG_D190212_S3	3	591.2804565429688	2	591.278989	1180.54342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.462	1	42.159	41.659	42.659	-0.30352								0	0	0	0.050723	1	15819	15819		100.09	63.016	1				21220	3031	13452	13521	20385	20385					-0.03962545707827303
MEVEVDGQKF	10	Unmodified	_MEVEVDGQKF_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	HCT116MG_D190212_S4	4	591.2791137695312	2	591.278989	1180.54342	0.73719	0.00043588	-0.040845	-2.4151E-05	0.69634	0.00041173	591.2787304822373	42.462	0.20742	42.086	41.994	42.202	-0.37565					5	3	2	0	0	0	0.49415	1	15630	15630		35.612	17.466	1	1683900			21221	3031	13452	13521	20386	20386					-0.03962545707827303
MEVEVDGQKF	10	Oxidation (M)	_M(Oxidation (M))EVEVDGQKF_		M(1)EVEVDGQKF		M(93)EVEVDGQKF	0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MSMS	HCT116MG_D190212_S2	2	599.2739868164062	2	599.276446	1196.53834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.2	1	36.072	35.572	36.572	-0.12799								0	0	0	0.054258	1	13529	13529		93.166	43.612	1				21222	3031	13452	13522	20387	20387		68			-0.05206849570458871
MEVIQKNSF	9	Unmodified	_MEVIQKNSF_					0	0	0		ENST00000359242.7_2_1:86851271-86852694:-|nuORF;ENST00000488879.6_1_1:86850449-86852694:-|nuORF;ENST00000478286.2_1_1:86852553-86852694:-|nuORF	ENST00000359242.7_2_1:86851271-86852694:-|nuORF	ENST00000359242.7_2_1:86851271-86852694:-|nuORF	MSMS	HCT116MG_D190212_S2	2	548.2792358398438	2	548.278792	1094.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.775	1	36.661	36.161	37.161	-0.11478								0	0	0	0.47756	1	13763	13763		29.841	3.5724	1				21223	7334	13453	13523	20388	20388					-0.00045920637035123946
MEVKPSSVTA	10	Unmodified	_MEVKPSSVTA_					0	0	0		nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3	nc|ENSG00000154640|Q14201-2|BTG3	nc|ENSG00000154640|Q14201-2|BTG3	MULTI-MSMS	HCT116MG_D190212_S2	2	524.7709350585938	2	524.7708	1047.52705	0.41086	0.00021561	-0.31464	-0.00016512	0.096215	5.0491E-05	524.7705073735182	27.75	0.25698	27.408	27.243	27.5	-0.34201					6	4	2	0	0	0	0.16257	1	10104	10104		80.676	46.274	1	30043000			21224	4225	13454	13524	20389	20389					0.005183731260785862
MEVKPSSVTA	10	Unmodified	_MEVKPSSVTA_					0	0	0		nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3	nc|ENSG00000154640|Q14201-2|BTG3	nc|ENSG00000154640|Q14201-2|BTG3	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7708129882812	2	524.7708	1047.52705	0.5465	0.00028679	-0.077276	-4.0552E-05	0.46922	0.00024623	524.7707148160554	27.679	0.25986	27.491	27.361	27.621	-0.18847					8	4	2	0	0	0	0.35466	1	10001	10001		59.052	31.424	1	6911400			21225	4225	13454	13524	20390	20390					0.005183731260785862
MEVKRAGN	8	Unmodified	_MEVKRAGN_					0	0	0			REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	453.2198486328125	2	452.737094	903.459635	0.027832	1.26E-05	0.14175	6.4174E-05	0.16958	7.6774E-05	452.73678067040856	15.917	0.15655	15.583	15.48	15.637	-0.33451					4	2	2	0	0	0	0.31855	1	5314	5314		13.508	8.2772	1	688250	+		21226	16771	13455	13525	20391	20391					0.0040438770578248295
MEVSATEL	8	Unmodified	_MEVSATEL_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	HCT116MG_D190212_S2	2	879.4130249023438	1	879.412811	878.405534	0.95205	0.00083724	-0.84323	-0.00074154	0.10882	9.5698E-05	879.412136715938	41.783	0.25936	41.715	41.549	41.808	-0.068195					6	4	2	0	0	0	0.3916	1	15820	15820		50.855	12.704	1	12375000			21227	2930	13456	13526	20392	20392					-0.0385324923644248
MEVVVITH	8	Unmodified	_MEVVVITH_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S1	1	464.2523193359375	2	464.252046	926.489538	0.58357	0.00027092	-0.40867	-0.00018972	0.1749	8.1197E-05	464.25180129199794	37.473	0.30163	37.473	37.301	37.602	0					7	5	2	0	0	0	0.23195	1	14009	14009		67.344	42.67	1	11521000			21228	6063;18668	13457	13527	20393	20393					0.02335326651120795
MEWVIHKL	8	Unmodified	_MEWVIHKL_					0	0	0		nc|ENSG00000101166|Q9Y3B1-2|PRELID3B;ENSG00000101166|ENST00000355937|PRELID3B	nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	nc|ENSG00000101166|Q9Y3B1-2|PRELID3B	MSMS	HCT116MG_D190212_S2	2	528.289306640625	2	528.288963	1054.56337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.482	1	46.371	45.871	46.871	-0.11121								0	0	0	0.41781	1	17706	17706		47.749	20.12	1				21229	1757	13458	13528	20394	20394					0.038272948134363105
MEWWLPETL	9	Unmodified	_MEWWLPETL_					0	0	0			REV__ENSG00000205978|ENST00000382554|NYNRIN	REV__ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MSMS	HCT116MG_D190212_S1	1	602.7892456054688	2	602.788992	1203.56343	0.32778	0.00019758	0.57133	0.00034439	0.89911	0.00054198	602.7893903053539	37.837	0.20807	37.837	37.707	37.916	0					5	3	2	0	0	0	0.32162	1	14160	14160		28.487	28.487	1	7289900	+		21230	14238	13459	13529	20395	20395					-0.030207499772131996
MEWWLPETL	9	Unmodified	_MEWWLPETL_					0	0	0			REV__ENSG00000205978|ENST00000382554|NYNRIN	REV__ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	602.788992	1203.56343	0.46928	0.00028288	0.73509	0.00044311	1.2044	0.00072598	602.7898878694186	37.872	0.25736	37.779	37.651	37.908	-0.09301	-0.029195	0.00016161	NaN	28.487	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17665000	+		21231	14238	13459	13529							-0.030207499772131996
MEYAWGRAA	9	Unmodified	_MEYAWGRAA_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-SECPEP	HCT116MG_D190212_S3	3	528.2817993164062	2	527.742376	1053.4702	0.41912	0.00022119	0.62779	0.00033131	1.0469	0.0005525	527.7427536934102	39.199	0.26279	38.898	38.716	38.979	-0.30137					7	4	2	0	0	0	0.21474	1	14552	14552		29.082	14.243	1	3428100			21232	2345	13460	13530	20396	20396					-0.05439629639795385
MEYHSFSEQ	9	Unmodified	_MEYHSFSEQ_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MSMS	HCT116MG_D190212_S3	3	579.23046875	2	579.232039	1156.44952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.229	1	29.98	29.48	30.48	-0.24946								0	0	0	0.76849	1	11010	11010		6.2058	1.8765	1				21233	3393	13461	13531	20397	20397					-0.12244264810101413
MEYSHGRAA	9	Unmodified	_MEYSHGRAA_					0	0	0		ENST00000496270.5_1_3:182983899-182987317:+|nuORF	ENST00000496270.5_1_3:182983899-182987317:+|nuORF	ENST00000496270.5_1_3:182983899-182987317:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	511.2297668457031	2	511.229633	1020.44471	0.36395	0.00018606	-0.12295	-6.2854E-05	0.24101	0.00012321	511.22955118407725	16.551	0.26026	16.551	16.421	16.681	0					7	4	2	0	0	0	0.026999	1	5600	5600		89.401	60.914	1	9703800			21234	8388	13462	13532	20398	20398					-0.06469104162215444
MEYSHGRAA	9	Unmodified	_MEYSHGRAA_					0	0	0		ENST00000496270.5_1_3:182983899-182987317:+|nuORF	ENST00000496270.5_1_3:182983899-182987317:+|nuORF	ENST00000496270.5_1_3:182983899-182987317:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2297058105469	2	511.229633	1020.44471	0.3137	0.00016037	-0.046034	-2.3534E-05	0.26766	0.00013684	511.2296091962566	17.04	0.52091	16.691	16.509	17.03	-0.34933					21	9	3	0	0	0	0.0023719	1	5783	5783		185.05	136.7	1	105710000			21235	8388	13462	13532	20399	20399					-0.06469104162215444
MEYSHGRAA	9	Unmodified	_MEYSHGRAA_					0	0	0		ENST00000496270.5_1_3:182983899-182987317:+|nuORF	ENST00000496270.5_1_3:182983899-182987317:+|nuORF	ENST00000496270.5_1_3:182983899-182987317:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1021.4520874023438	1	1021.45199	1020.44471	0.74957	0.00076565	0.41502	0.00042393	1.1646	0.0011896	1021.4519124007448	17.04	0.20822	16.691	16.613	16.821	-0.34933					5	3	2	0	0	0	0.0045841	1	5807	5807		142.08	102.13	1	6930900			21236	8388	13462	13532	20400	20400					-0.06469104162215444
MEYSHGRAA	9	Unmodified	_MEYSHGRAA_					0	0	0		ENST00000496270.5_1_3:182983899-182987317:+|nuORF	ENST00000496270.5_1_3:182983899-182987317:+|nuORF	ENST00000496270.5_1_3:182983899-182987317:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	511.229736328125	2	511.229633	1020.44471	0.13807	7.0588E-05	0.057113	2.9198E-05	0.19519	9.9785E-05	511.22970868984817	15.71	0.41659	15.795	15.665	16.081	0.085423					15	7	3	0	0	0	0.016744	1	5182	5182		99.755	67.45	1	17485000			21237	8388	13462	13532	20401	20401					-0.06469104162215444
MFANRKCSAD	10	Unmodified	_MFANRKCSAD_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	HCT116MG_D190212_S3	3	573.24169921875	2	571.757701	1141.50085	0.53619	0.00030657	-0.70477	-0.00040296	-0.16858	-9.639E-05	571.7571103723601	14.6	0.61221	14.68	14.422	15.035	0.079683					24	11	4	0	0	0	0.86862	1	4619	4619		6.2058	6.2058	1	6398900	+		21238	11885	13463	13533	20402	20402					-0.06424219317045754
MFFRVVGTP	9	Unmodified	_MFFRVVGTP_					0	0	0		nc|ENSG00000182578|P07333-2|CSF1R	nc|ENSG00000182578|P07333-2|CSF1R	nc|ENSG00000182578|P07333-2|CSF1R	MSMS	HCT116MG_D190212_S1	1	527.282470703125	2	527.281137	1052.54772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.848	1	20.848	20.348	21.348	0								0	0	0	0.74436	1	7308	7308		16.942	1.0951	1				21239	9575	13464	13534	20403	20403					0.02355008296399319
MFLLVVVP	8	Unmodified	_MFLLVVVP_					0	0	0		sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1;sp|F5HE44|US12_HCMVMUncharacterizedproteinUS12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US12PE=3SV=1	sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	459.2801818847656	2	459.280075	916.545597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.957	1	39.656	39.156	40.156	-0.30137								0	0	0	0.8837	1	14819	14819		2.8892	0	1				21240	18199	13465	13535	20404	20404					0.08398579558593156
MFLSFPTTK	9	Unmodified	_MFLSFPTTK_					0	0	0		CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	536.281005859375	2	536.280803	1070.54705	0.34568	0.00018538	0.12456	6.6799E-05	0.47024	0.00025218	536.2808702957172	51.691	0.31161	51.691	51.549	51.861	0					12	5	3	0	0	0	0.05892	2	19761	19741;19761		70.332	26.474	1	19352000		+	21241	545;5988	13466	13536	20405;20406	20406					0.014601688566699522
MFLSFPTTK	9	Unmodified	_MFLSFPTTK_					0	0	0		CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2811279296875	2	536.280803	1070.54705	0.45965	0.0002465	0.28143	0.00015092	0.74108	0.00039742	536.2809656302418	52.081	0.96641	51.771	50.964	51.931	-0.30927					19	18	2	0	0	0	0.22528	1	19735	19735		38.615	9.5332	1	10550000		+	21242	545;5988	13466	13536	20407	20407					0.014601688566699522
MFLSFPTTK	9	Unmodified	_MFLSFPTTK_					0	0	0		CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MSMS	HCT116MG_D190212_S4	4	536.2809448242188	2	536.280803	1070.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.159	1	51.814	51.314	52.314	-0.34538								0	0	0	0.025932	1	19435	19435		86.332	27.653	1			+	21243	545;5988	13466	13536	20408	20408					0.014601688566699522
MFLSFPTTK	9	Unmodified	_MFLSFPTTK_					0	0	0		CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	CON__P01966;ENSG00000206172|ENST00000320868|HBA1	CON__P01966	MULTI-MATCH	HCT116MG_D190212_S2	2		2	536.280803	1070.54705	0.62381	0.00033454	-1.6731	-0.00089727	-1.0493	-0.00056273	536.2804692878457	51.918	0.25737	51.734	51.578	51.835	-0.18368	0.00207	-0.0020254	NaN	70.332	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7458700		+	21244	545;5988	13466	13536							0.014601688566699522
MFPGGAAA	8	Unmodified	_MFPGGAAA_					0	0	0		ENST00000342558.3_1_10:75255706-75255742:-|nuORF	ENST00000342558.3_1_10:75255706-75255742:-|nuORF	ENST00000342558.3_1_10:75255706-75255742:-|nuORF	MSMS	HCT116MG_D190212_S1	1	361.170654296875	2	361.170524	720.326496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.82	1	64.82	64.32	65.32	0								0	0	0	0.8837	1	24981	24981		0.79363	0	1				21245	7228	13467	13537	20409	20409					-0.04485431680086549
MFRQRFRQFGY	11	Unmodified	_MFRQRFRQFGY_					0	0	0		ENSG00000166529|ENST00000292450|ZSCAN21	ENSG00000166529|ENST00000292450|ZSCAN21	ENSG00000166529|ENST00000292450|ZSCAN21	MSMS	HCT116MG_D190212_S4	4	768.3908081054688	2	768.388062	1534.76157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.358	1	44.985	44.485	45.485	-0.37266								0	0	0	0.95925	1	16729	16729		1.4819	0.15237	1				21246	4864	13468	13538	20410	20410					0.015581087251348436
MFSPKVLAPQ	10	Unmodified	_MFSPKVLAPQ_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K5937Nfs*10|1|0.37|ENSG00000175820|chr13:102732886-102732886|T/-|frameshift_variant;CCDC168|p.G6141Lfs*25|1|0.03|ENSG00000175820|chr13:102732276-102732277|-/AGGAAAAATCACCAAACACTAG|frameshift_variant;CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MSMS	HCT116MG_D190212_S2	2	559.4150390625	2	559.307352	1116.60015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.018	1	47.885	47.385	48.385	-0.13281								0	0	0	0.91971	1	18332	18332		11.495	0.67078	1				21247	5396	13469	13539	20411	20411					0.04651546639342996
MFVCQKMIY	9	Unmodified	_MFVCQKMIY_					0	0	0			REV__nc|ENSG00000111731|Q86YS7|C2CD5	REV__nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-MSMS	HCT116MG_D190212_S4	4	581.7763671875	2	581.776516	1161.53848	0.18129	0.00010547	-0.16228	-9.4413E-05	0.019005	1.1057E-05	581.7763321943836	51.682	0.25991	51.332	51.202	51.462	-0.35028					7	4	2	0	0	0	0.43775	1	19271	19271		20.454	20.454	1	4272600	+		21248	11436	13470	13540	20412	20412					-0.035828443757964124
MFWYRQDL	8	Unmodified	_MFWYRQDL_					0	0	0		nc|ENSG00000229769|A0A0K0K1G8|TRBV10-2;nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1	nc|ENSG00000229769|A0A0K0K1G8|TRBV10-2	nc|ENSG00000229769|A0A0K0K1G8|TRBV10-2	MSMS	HCT116MG_D190212_S1	1	386.8526306152344	3	386.851543	1157.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.523	1	10.523	10.023	11.023	0								0	0	0	0.8837	1	3236	3236		0.45834	0.18932	1				21249	9624	13471	13541	20413	20413					-0.03966483571593926
MGERAEMY	8	Unmodified	_MGERAEMY_					0	0	0			REV__ENSG00000178233|ENST00000451188|TMEM151B	REV__ENSG00000178233|ENST00000451188|TMEM151B	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7076416015625	2	493.707145	985.399737	0.55823	0.0002756	0.34149	0.00016859	0.89971	0.00044419	493.70726661877904	42.785	0.25957	42.715	42.533	42.793	-0.069984					8	4	2	0	0	0	0.73234	1	16199	16199		19.257	0	1	52344000	+		21250	13598	13472	13542	20414	20414					-0.09354671019775651
MGGMCSSNCMC	11	Unmodified	_MGGMCSSNCMC_					0	0	0			REV__TP53|p.Y236C|1|0.64|ENSG00000141510|chr17:7674256-7674256|T/C|missense_variant	REV__TP53|p.Y236C|1|0.64|ENSG00000141510|chr17:7674256-7674256|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	375.1106872558594	3	375.110438	1122.30948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.544	1	57.249	56.749	57.749	-0.29465								0	0	0	0.96208	1	21602	21602		0	0	1		+		21251	17654	13473	13543	20415	20415					-0.24677870997993523
MGHWWWRMWWH	11	Unmodified	_MGHWWWRMWWH_					0	0	0		IHH|p.P266Hfs*99|2|0.37|ENSG00000163501|chr2:219055646-219055646|G/-|frameshift_variant	IHH|p.P266Hfs*99|2|0.37|ENSG00000163501|chr2:219055646-219055646|G/-|frameshift_variant	IHH|p.P266Hfs*99|2|0.37|ENSG00000163501|chr2:219055646-219055646|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	849.8740844726562	2	849.871525	1697.7285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.964	1	40.964	40.464	41.464	0								0	0	0	0.9619	1	15412	15412		0.35063	0.35063	1				21252	9235	13474	13544	20416	20416					-0.0924579659858864
MGHWWWRMWWH	11	Unmodified	_MGHWWWRMWWH_					0	0	0		IHH|p.P266Hfs*99|2|0.37|ENSG00000163501|chr2:219055646-219055646|G/-|frameshift_variant	IHH|p.P266Hfs*99|2|0.37|ENSG00000163501|chr2:219055646-219055646|G/-|frameshift_variant	IHH|p.P266Hfs*99|2|0.37|ENSG00000163501|chr2:219055646-219055646|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	566.9151611328125	3	566.916776	1697.7285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.36	1	53.057	52.557	53.557	-0.30305								0	0	0	0.96208	1	20194	20194		0	0	1				21253	9235	13474	13544	20417	20417					-0.0924579659858864
MGKSGDRG	8	Unmodified	_MGKSGDRG_					0	0	0			REV__COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant	REV__COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	404.19268798828125	2	404.192519	806.370486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.002	1	57.002	56.502	57.502	0								0	0	0	0.8837	1	21926	21926		2.3027	0	1		+		21254	10231	13475	13545	20418	20418					-0.04044447253738781
MHCMWWERWMK	11	Unmodified	_MHCMWWERWMK_					0	0	0		ENST00000301180.9_1_12:51133363-51135252:+|nuORF	ENST00000301180.9_1_12:51133363-51135252:+|nuORF	ENST00000301180.9_1_12:51133363-51135252:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	542.2346801757812	3	541.899517	1622.67672	0.52793	0.00028609	-0.056053	-3.0375E-05	0.47188	0.00025571	541.8993113937025	13.103	0.12736	13.172	13.103	13.231	0.069158					8	5	2	0	0	0	0.36631	1	4115	4115		0	0	1	293000			21255	6999	13476	13546	20419	20419					-0.10971044399002494
MHDFFVGLMGK	11	Unmodified	_MHDFFVGLMGK_					0	0	0		ENSG00000166863|ENST00000458521|TAC3;nc|ENSG00000166863|Q9UHF0-2|TAC3	ENSG00000166863|ENST00000458521|TAC3	ENSG00000166863|ENST00000458521|TAC3	MSMS	HCT116MG_D190212_S4	4	427.8769836425781	3	427.875471	1280.60458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.675	1	4.4105	3.9105	4.9105	-0.26456								0	0	0	0.9598	1	1428	1428		0.40827	0	1				21256	4884	13477	13547	20420	20420					-0.024493122094099817
MHGQDIAT	8	Unmodified	_MHGQDIAT_					0	0	0		nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	MSMS	HCT116MG_D190212_S1	1	436.6998291015625	2	436.700177	871.385802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.93	1	26.93	26.43	27.43	0								0	0	0	0.8837	1	9751	9751		8.5933	0	1				21257	1289	13478	13548	20421	20421					-0.05503580456547752
MHLLLILV	8	Unmodified	_MHLLLILV_					0	0	0		PNLIPRP3|p.E270Kfs*66|1|0.31|ENSG00000203837|chr10:116461284-116461284|A/-|frameshift_variant	PNLIPRP3|p.E270Kfs*66|1|0.31|ENSG00000203837|chr10:116461284-116461284|A/-|frameshift_variant	PNLIPRP3|p.E270Kfs*66|1|0.31|ENSG00000203837|chr10:116461284-116461284|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	476.3058776855469	2	476.306624	950.598695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.235	1	45.235	44.735	45.735	0								0	0	0	0.8837	1	17133	17133		0.79363	0	1				21258	9758	13479	13549	20422	20422					0.12141957341248144
MHQIGDVKDV	10	Unmodified	_MHQIGDVKDV_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MSMS	HCT116MG_D190212_S4	4	381.1955261230469	3	381.193858	1140.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.088	1	45.716	45.216	46.216	-0.37206								0	0	0	0.95741	1	17022	17022		3.0723	0.22898	1				21259	908	13480	13550	20423	20423					-0.004914197510743179
MHQNYSGAL	9	Unmodified	_MHQNYSGAL_					0	0	0		TTC21B|p.R191H|1|0.08|ENSG00000123607|chr2:165941165-165941165|C/T|missense_variant	TTC21B|p.R191H|1|0.08|ENSG00000123607|chr2:165941165-165941165|C/T|missense_variant	TTC21B|p.R191H|1|0.08|ENSG00000123607|chr2:165941165-165941165|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	510.76513671875	2	510.732009	1019.44946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.8	1	56.519	56.019	57.019	-0.28135								0	0	0	0.768	1	21571	21571		7.9102	1.187	1				21260	18671	13481	13551	20424	20424					-0.05948220019445216
MHRKRDNSLQ	10	Unmodified	_MHRKRDNSLQ_					0	0	0		CASZ1|p.K516R|1|0.24|ENSG00000130940|chr1:10655767-10655767|T/C|missense_variant	CASZ1|p.K516R|1|0.24|ENSG00000130940|chr1:10655767-10655767|T/C|missense_variant	CASZ1|p.K516R|1|0.24|ENSG00000130940|chr1:10655767-10655767|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.891172	1283.65169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0284	1	0.76386	0.26386	1.2639	-0.26456								0	0	0	0.97045	1	312	312		0.15932	0	1				21261	332	13482	13552	20425	20425					0.021206833859650942
MHSFPGAG	8	Unmodified	_MHSFPGAG_					0	0	0			REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MSMS	HCT116MG_D190212_S3	3	402.1798095703125	2	402.178881	802.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.4986	1	2.5539	2.0539	3.0539	0.055284								0	0	0	0.8837	1	757	757		0.79363	0	1		+		21262	11154	13483	13553	20426	20426					-0.06586930794117052
MHWKMRSHFNR	11	Unmodified	_MHWKMRSHFNR_					0	0	0		nc|ENSG00000292332|P26951-2|IL3RA;ENSG00000185291|ENST00000331035|IL3RA	nc|ENSG00000292332|P26951-2|IL3RA	nc|ENSG00000292332|P26951-2|IL3RA	MULTI-SECPEP	HCT116MG_D190212_S2	2	510.2177734375	3	510.583685	1528.72923	0.29908	0.00015271	-1.6632	-0.00084921	-1.3641	-0.00069651	510.5829816076638	29.133	0.30782	28.817	28.606	28.914	-0.31613					9	5	3	0	0	0	0.36606	1	10696	10696		2.2527	1.0379	1	33584000			21263	5818	13484	13554	20427	20427					-0.013990019494940498
MHWKMRSHFNR	11	Unmodified	_MHWKMRSHFNR_					0	0	0		nc|ENSG00000292332|P26951-2|IL3RA;ENSG00000185291|ENST00000331035|IL3RA	nc|ENSG00000292332|P26951-2|IL3RA	nc|ENSG00000292332|P26951-2|IL3RA	MSMS	HCT116MG_D190212_S3	3	510.58270263671875	3	510.583685	1528.72923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.155	1	28.933	28.433	29.433	-0.22195								0	0	0	0.94012	1	10580	10580		6.2344	0	1				21264	5818	13484	13554	20428	20428					-0.013990019494940498
MIARYLAP	8	Unmodified	_MIARYLAP_					0	0	0			REV__ENSG00000066135|ENST00000372396|KDM4A	REV__ENSG00000066135|ENST00000372396|KDM4A	MULTI-MSMS	HCT116MG_D190212_S1	1	467.7635192871094	2	467.762581	933.510608	0.038436	1.7979E-05	1.6016	0.00074917	1.64	0.00076715	467.7631674124669	48.383	0.2566	48.383	48.254	48.511	0					8	4	2	0	0	0	0.84759	1	18436	18436		5.7604	0	1	23490000	+		21265	10711	13485	13555	20429	20429					0.0411933675062528
MIARYLAP	8	Unmodified	_MIARYLAP_					0	0	0			REV__ENSG00000066135|ENST00000372396|KDM4A	REV__ENSG00000066135|ENST00000372396|KDM4A	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	467.762581	933.510608	0.038436	1.7979E-05	1.6016	0.00074917	1.64	0.00076715	467.7631674124669	48.383	0.2566	48.383	48.254	48.511	0	0	0	NaN	5.7604	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23490000	+		21266	10711	13485	13555							0.0411933675062528
MIDETRNSLY	10	Unmodified	_MIDETRNSLY_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MSMS	HCT116MG_D190212_S3	3	621.2952270507812	2	621.29517	1240.57579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.934	1	35.633	35.133	36.133	-0.30042								0	0	0	0.57395	1	13260	13260		43.982	17.714	1				21267	3177	13486	13556	20430	20430					-0.034877583048000815
MIDEYLPP	8	Unmodified	_MIDEYLPP_					0	0	0			REV__ENSG00000108506|ENST00000251334|INTS2	REV__ENSG00000108506|ENST00000251334|INTS2	MSMS	HCT116MG_D190212_S4	4	489.2342529296875	2	489.236061	976.45757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.432	1	32.053	31.553	32.553	-0.37924								0	0	0	0.8837	1	11812	11812		10.183	0	1		+		21268	11348	13487	13557	20431	20431					-0.031600858226852324
MIDPSGVSY	9	Unmodified	_MIDPSGVSY_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;PSMA3|p.I197*|1|0.27|ENSG00000100567|chr14:58267515-58267515|A/-|frameshift_variant;ENST00000555743.1_1_14:58711638-58734239:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MSMS	HCT116MG_D190212_S1	1	968.4412841796875	1	968.43936	967.432083	0.49219	0.00047666	0.092482	8.9563E-05	0.58467	0.00056622	968.439461182021	39.787	0.31185	39.787	39.605	39.917	0					12	5	3	0	0	0	0.010304	1	14920	14920		112.59	55.122	1	31723000			21269	1718	13488	13558	20432	20432					-0.052935603451032875
MIDPSGVSY	9	Unmodified	_MIDPSGVSY_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;PSMA3|p.I197*|1|0.27|ENSG00000100567|chr14:58267515-58267515|A/-|frameshift_variant;ENST00000555743.1_1_14:58711638-58734239:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MSMS	HCT116MG_D190212_S1	1	484.7233581542969	2	484.723318	967.432083	0.034776	1.6857E-05	0.063453	3.0757E-05	0.098229	4.7614E-05	484.7233251730363	39.798	0.31185	39.798	39.605	39.917	0					7	5	2	0	0	0	0.14972	1	14960	14960		48.346	26.599	1	8519400			21270	1718	13488	13558	20433	20433					-0.052935603451032875
MIDPSGVSY	9	Unmodified	_MIDPSGVSY_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;PSMA3|p.I197*|1|0.27|ENSG00000100567|chr14:58267515-58267515|A/-|frameshift_variant;ENST00000555743.1_1_14:58711638-58734239:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MSMS	HCT116MG_D190212_S2	2	968.4396362304688	1	968.43936	967.432083	0.41366	0.00040061	-0.071835	-6.9568E-05	0.34183	0.00033104	968.4393189850795	39.836	0.46537	39.763	39.584	40.05	-0.072838					21	8	4	0	0	0	0.020181	1	15000	15000		96.285	38.813	1	177470000			21271	1718	13488	13558	20434	20434					-0.052935603451032875
MIDPSGVSY	9	Unmodified	_MIDPSGVSY_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;PSMA3|p.I197*|1|0.27|ENSG00000100567|chr14:58267515-58267515|A/-|frameshift_variant;ENST00000555743.1_1_14:58711638-58734239:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MSMS	HCT116MG_D190212_S2	2	484.7234191894531	2	484.723318	967.432083	-0.040439	-1.9602E-05	0.22532	0.00010922	0.18488	8.9616E-05	484.72338535963144	39.837	0.41333	39.764	39.584	39.998	-0.072838					13	7	2	0	0	0	0.031005	1	15023	15023		85.357	47.206	1	23491000			21272	1718	13488	13558	20435	20435					-0.052935603451032875
MIDPSGVSY	9	Unmodified	_MIDPSGVSY_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;PSMA3|p.I197*|1|0.27|ENSG00000100567|chr14:58267515-58267515|A/-|frameshift_variant;ENST00000555743.1_1_14:58711638-58734239:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MSMS	HCT116MG_D190212_S3	3	484.7229919433594	2	484.723318	967.432083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.141	1	39.84	39.34	40.34	-0.30137								0	0	0	0.3563	1	14892	14892		36.044	1.8569	1				21273	1718	13488	13558	20436	20436					-0.052935603451032875
MIDVTKSYY	9	Unmodified	_MIDVTKSYY_					0	0	0		ENST00000566053.5_1_16:23652819-23678462:+|nuORF;ENSG00000166847|ENST00000300087|DCTN5	ENST00000566053.5_1_16:23652819-23678462:+|nuORF	ENST00000566053.5_1_16:23652819-23678462:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	560.2731323242188	2	560.273175	1118.5318	0.21034	0.00011785	0.45468	0.00025475	0.66502	0.00037259	560.2730634164694	39.683	0.25998	39.683	39.553	39.813	0					6	4	2	0	0	0	0.27446	1	14921	14921		33.445	9.4243	1	12437000			21274	4881	13489	13559	20437	20437					-0.022727427311565407
MIEPRTLQY	9	Oxidation (M)	_M(Oxidation (M))IEPRTLQY_		M(1)IEPRTLQY		M(110)IEPRTLQY	0	0	1		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	HCT116MG_D190212_S1	1	583.7977294921875	2	583.797349	1165.58014	0.66056	0.00038563	0.48119	0.00028091	1.1417	0.00066655	583.797523773763	35.076	0.30648	35.076	34.909	35.215	0					12	5	3	0	0	0	0.011132	1	13029	13029		110.55	41.448	1	53538000			21275	1987	13490	13560	20438	20438		39			0.0039775090874627494
MIEPRTLQY	9	Oxidation (M)	_M(Oxidation (M))IEPRTLQY_		M(1)IEPRTLQY		M(120)IEPRTLQY	0	0	1		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	HCT116MG_D190212_S2	2	583.7976684570312	2	583.797349	1165.58014	0.5331	0.00031122	0.026231	1.5313E-05	0.55933	0.00032653	583.7972892801457	35.151	0.36206	34.993	34.761	35.123	-0.15834					17	6	4	0	0	0	0.0082095	1	13085	13085		117.76	48.656	1	126160000			21276	1987	13490	13560	20439	20439		39			0.0039775090874627494
MIEPRTLQY	9	Oxidation (M)	_M(Oxidation (M))IEPRTLQY_		M(1)IEPRTLQY		M(68)IEPRTLQY	0	0	1		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MSMS	HCT116MG_D190212_S3	3	583.7977294921875	2	583.797349	1165.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.396	1	35.096	34.596	35.596	-0.29922								0	0	0	0.058768	1	13063	13063		67.838	31.711	1				21277	1987	13490	13560	20440	20440		39			0.0039775090874627494
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	HCT116MG_D190212_S1	1	575.8001708984375	2	575.799891	1149.58523	0.16075	9.2559E-05	-0.98683	-0.00056822	-0.82608	-0.00047566	575.7998927240124	38.989	0.41507	38.989	38.748	39.163	0					29	7	5	0	0	0	0.0055242	1	14593	14593		133.05	44.098	1	237180000			21278	1987	13490	13561	20441	20441					0.01642054771355106
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	HCT116MG_D190212_S2	2	575.8001708984375	2	575.799891	1149.58523	0.44518	0.00025634	-1.1715	-0.00067456	-0.72634	-0.00041823	575.7999235645897	38.992	0.67303	38.907	38.597	39.27	-0.084618					47	12	5	0	0	0	0.0043772	2	14627	14614;14627		145.13	56.176	1	1057399999.9999999			21279	1987	13490	13561	20442;20443	20443					0.01642054771355106
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	HCT116MG_D190212_S2	2	1150.593017578125	1	1150.59251	1149.58523	0.58031	0.00066771	-0.11388	-0.00013103	0.46644	0.00053668	1150.5929645520503	39.02	0.30956	38.935	38.754	39.063	-0.084618					9	5	2	0	0	0	0.0056012	1	14663	14663		132.38	59.412	1	40073000			21280	1987	13490	13561	20444	20444					0.01642054771355106
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MSMS	HCT116MG_D190212_S3	3	575.80029296875	2	575.799891	1149.58523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.219	1	38.917	38.417	39.417	-0.30137								0	0	0	0.003374	1	14554	14554		121.53	42.806	1				21281	1987	13490	13561	20445	20445					0.01642054771355106
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MSMS	HCT116MG_D190212_S4	4	575.8128662109375	2	575.799891	1149.58523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.32	1	38.94	38.44	39.44	-0.38055								0	0	0	0.10186	1	14443	14443		55.503	15.545	1				21282	1987	13490	13561	20446	20446					0.01642054771355106
MIIGSYELRY	10	Unmodified	_MIIGSYELRY_					0	0	0			REV__ENST00000608872.5_1_9:123523932-123524193:-|nuORF	REV__ENST00000608872.5_1_9:123523932-123524193:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	623.3223266601562	2	622.820824	1243.62709	0.49663	0.00030931	-0.43923	-0.00027356	0.057408	3.5755E-05	623.321899435169	41.351	0.51156	41.283	41.037	41.549	-0.068199					17	9	3	0	0	0	0.71349	1	15666	15666		19.257	5.3509	1	53305000	+		21283	16787	13491	13562	20447	20447					0.015026104598518941
MIIVFATKI	9	Unmodified	_MIIVFATKI_					0	0	0			REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	518.3171997070312	2	518.317189	1034.61982	0.49593	0.00025705	-0.18361	-9.517E-05	0.31231	0.00016188	518.3169919543778	46.259	2.2334	46.259	44.88	47.114	0					135	42	4	0	0	0	0.71345	1	17589	17589		4.3292	4.3292	1	551670000	+		21284	10652	13492	13563	20448	20448					0.10389922650097105
MIKKALFP	8	Unmodified	_MIKKALFP_					0	0	0		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	474.29071044921875	2	474.290974	946.567395	0.42469	0.00020143	-0.43209	-0.00020494	-0.0074039	-3.5116E-06	474.2906576046922	53.063	0.98897	52.729	52.307	53.296	-0.33473					33	18	2	0	0	0	0.81097	1	19880	19880		10.183	0.83596	1	5162700			21285	59	13493	13564	20449	20449					0.09197384307151424
MIKKALFP	8	Unmodified	_MIKKALFP_					0	0	0		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	474.2911071777344	2	474.290974	946.567395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.302	1	48.937	48.437	49.437	-0.365								0	0	0	0.8837	1	18283	18283		6.3541	3.4649	1				21286	59	13493	13564	20450	20450					0.09197384307151424
MIKKIKLMK	9	Unmodified	_MIKKIKLMK_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MSMS	HCT116MG_D190212_S4	4	378.29754638671875	3	378.248469	1131.72358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.652	1	56.347	55.847	56.847	-0.3046								0	0	0	0.77018	1	21242	21242		0.26902	0	1		+		21287	12453	13494	13565	20451	20451					0.1629850648610045
MILPDRLVIRK	11	Unmodified	_MILPDRLVIRK_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MSMS	HCT116MG_D190212_S3	3	677.4232177734375	2	677.423582	1352.83261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.28	1	53.984	53.484	54.484	-0.29587								0	0	0	0.95925	1	20564	20564		1.4819	0	1				21288	5712	13495	13566	20452	20452					0.170308087099329
MILRRVKKLFN	11	Unmodified	_MILRRVKKLFN_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2996826171875	3	473.298991	1416.87514	0.49934	0.00023634	0.5965	0.00028232	1.0958	0.00051866	473.29919286886803	56.615	0.31321	56.309	56.148	56.461	-0.30626					12	5	3	0	0	0	0.74191	1	21247	21247		1.4551	0.94916	1	3226800	+		21289	13965	13496	13567	20453	20453					0.18338203838197842
MILRRVKKLFN	11	Unmodified	_MILRRVKKLFN_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	473.298991	1416.87514	0.22808	0.00010795	1.2106	0.00057299	1.4387	0.00068093	473.2997067951387	56.334	0.46375	56.334	56.119	56.583	0	0.016602	0.00040977	NaN	1.4551	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56476000	+		21290	13965	13496	13567							0.18338203838197842
MILRRVKKLFN	11	Unmodified	_MILRRVKKLFN_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	473.298991	1416.87514	0.3446	0.0001631	0.87346	0.00041341	1.2181	0.00057651	473.29931046733736	56.491	0.73604	56.309	56.052	56.788	-0.18261	-0.0082676	-6.8965E-05	NaN	1.4551	36	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97775000	+		21291	13965	13496	13567							0.18338203838197842
MILRRVKKLFN	11	Unmodified	_MILRRVKKLFN_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	473.298991	1416.87514	0.49934	0.00023634	0.5965	0.00028232	1.0958	0.00051866	473.29919286886803	56.615	0.31321	56.309	56.148	56.461	-0.30626	-0.0083341	-0.00046221	NaN	1.4551	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3226800	+		21292	13965	13496	13567							0.18338203838197842
MIMVLIFFL	9	Unmodified	_MIMVLIFFL_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MSMS	HCT116MG_D190212_S1	1	376.2441711425781	3	376.218287	1125.63303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.807	1	21.807	21.307	22.307	0								0	0	0	0.7694	1	7690	7690		2.9952	1.3426	1				21293	2877	13497	13568	20454	20454					0.0752403743783816
MIMVLIFFLF	10	Unmodified	_MIMVLIFFLF_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MSMS	HCT116MG_D190212_S3	3	637.359619140625	2	637.357999	1272.70145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.382	1	56.098	55.598	56.598	-0.28367								0	0	0	0.93576	1	21403	21403		7.9102	0	1				21294	2877	13498	13569	20455	20455					0.07600282017688187
MIPSELIFTL	10	Unmodified	_MIPSELIFTL_					0	0	0			REV__ENST00000307296.7_1_3:33908633-33908810:+|nuORF	REV__ENST00000307296.7_1_3:33908633-33908810:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	582.3250122070312	2	582.322668	1162.63078	0.5742	0.00033437	3.9358	0.0022919	4.51	0.0026263	582.3254377492323	45.884	0.31128	45.573	45.357	45.668	-0.31094					10	5	3	0	0	0	0.58749	1	17204	17204		29.082	0	1	4408000	+		21295	14815	13499	13570	20456	20456					0.0559728023374646
MIQKMKLAL	9	Unmodified	_MIQKMKLAL_					0	0	0			REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	MSMS	HCT116MG_D190212_S2	2	359.2173767089844	3	359.217058	1074.62934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.293	1	45.2	44.7	45.7	-0.092472								0	0	0	0.7696	1	17220	17220		1.1933	0	1		+		21296	13208	13500	13571	20457	20457					0.09501367663983729
MIQKMKLAL	9	Unmodified	_MIQKMKLAL_					0	0	0			REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	MSMS	HCT116MG_D190212_S4	4	359.2174072265625	3	359.217058	1074.62934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.791	1	38.409	37.909	38.909	-0.38163								0	0	0	0.76877	1	14230	14230		2.9952	0	1		+		21297	13208	13500	13571	20458	20458					0.09501367663983729
MIQLIEKKAV	10	Unmodified	_MIQLIEKKAV_					0	0	0			REV__ENST00000481066.1_1_2:55872466-55874499:-|nuORF	REV__ENST00000481066.1_1_2:55872466-55874499:-|nuORF	MSMS	HCT116MG_D190212_S2	2	586.8551025390625	2	586.857209	1171.69987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.852	1	49.689	49.189	50.189	-0.16369								0	0	0	0.94107	1	19092	19092		6.7232	0.99131	1		+		21298	12205	13501	13572	20459	20459					0.12088364253281725
MIRKNKASPQP	11	Unmodified	_MIRKNKASPQP_					0	0	0		ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENST00000412461.2_1_22:19043875-19044022:+|nuORF	MSMS	HCT116MG_D190212_S3	3	635.8253173828125	2	635.358439	1268.70233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.174	1	34.875	34.375	35.375	-0.29903								0	0	0	0.95113	1	12974	12974		5.7319	0.43497	1				21299	7737	13502	13573	20460	20460					0.07872212710958593
MISAKGAK	8	Unmodified	_MISAKGAK_					0	0	0			REV__FAM81B|p.K315Nfs*18|2|0.35|ENSG00000153347|chr5:95446608-95446608|A/-|frameshift_variant	REV__FAM81B|p.K315Nfs*18|2|0.35|ENSG00000153347|chr5:95446608-95446608|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	403.2320556640625	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.76389	1	0.49933	-0.00067383	0.99933	-0.26456								0	0	0	0.8837	1	244	244		2.5775	0	1		+		21300	12652	13503	13574	20461	20461					0.042710748252034136
MISAKGAK	8	Unmodified	_MISAKGAK_					0	0	0			REV__FAM81B|p.K315Nfs*18|2|0.35|ENSG00000153347|chr5:95446608-95446608|A/-|frameshift_variant	REV__FAM81B|p.K315Nfs*18|2|0.35|ENSG00000153347|chr5:95446608-95446608|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	403.2325134277344	2	403.233656	804.452759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.219	1	61.97	61.47	62.47	-0.24919								0	0	0	0.8837	1	23491	23491		2.5775	0	1		+		21301	12652	13503	13574	20462	20462					0.042710748252034136
MISFTILVVP	10	Unmodified	_MISFTILVVP_					0	0	0		ENST00000584866.1_1_17:8347372-8347420:+|nuORF	ENST00000584866.1_1_17:8347372-8347420:+|nuORF	ENST00000584866.1_1_17:8347372-8347420:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	560.3287963867188	2	560.327753	1118.64095	0.70301	0.00039391	1.4473	0.00081095	2.1503	0.0012049	560.3281208587503	47.694	0.46502	47.562	47.273	47.738	-0.13281					14	8	3	0	0	0	0.81435	1	18234	18234		10.824	4.6181	1	21770000			21302	8980	13504	13575	20463	20463					0.08637887958980173
MIVVPYTLP	9	Unmodified	_MIVVPYTLP_					0	0	0		nc|ENSG00000006659|Q8TCE9-2|LGALS14	nc|ENSG00000006659|Q8TCE9-2|LGALS14	nc|ENSG00000006659|Q8TCE9-2|LGALS14	MULTI-SECPEP	HCT116MG_D190212_S4	4	516.2796020507812	2	516.793546	1031.57254	0.25999	0.00013436	0.37802	0.00019536	0.63801	0.00032972	516.7935904780685	48.19	0.77487	47.823	47.31	48.085	-0.36727					20	15	2	0	0	0	0.26096	1	17824	17824		5.2307	0	1	3459200			21303	9362	13505	13576	20464	20464					0.05801643379095367
MKALLLFSI	9	Unmodified	_MKALLLFSI_					0	0	0		nc|ENSG00000169083|P10275-2|AR;ENSG00000169083|ENST00000374690|AR	nc|ENSG00000169083|P10275-2|AR	nc|ENSG00000169083|P10275-2|AR	MULTI-MSMS	HCT116MG_D190212_S4	4	518.3172607421875	2	518.317189	1034.61982	0.34062	0.00017655	-0.19071	-9.8848E-05	0.14991	7.7699E-05	518.3170568189745	45.79	1.2855	45.418	44.511	45.797	-0.37206					57	36	2	0	0	0	0.76814	1	16989	16989		0.52476	0	1	47277000			21304	9542	13506	13577	20465	20465					0.10389922650097105
MKGGNFGG	8	Unmodified	_MKGGNFGG_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000509706.1_1_8:83203861-83203996:-|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	384.1786804199219	2	384.178881	766.343209	-0.1303	-5.0059E-05	-0.20264	-7.7851E-05	-0.33295	-0.00012791	384.1786574031703	21.62	0.20853	21.62	21.489	21.698	0					6	3	2	0	0	0	0.50777	1	7634	7634		40.449	18.702	1	6774600			21305	441	13507	13578	20466	20466					-0.04930930794114374
MKGGSKGY	8	Unmodified	_MKGGSKGY_					0	0	0		nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000197959|Q9UQ16-5|DNM3	MULTI-MSMS	HCT116MG_D190212_S2	2	414.2080078125	2	414.207638	826.400723	-0.064372	-2.6663E-05	1.1864	0.00049141	1.122	0.00046474	414.2080289940257	50.824	0.25792	50.65	50.505	50.763	-0.17405					7	4	2	0	0	0	0.8506	1	19507	19507		5.2307	0	1	17323000			21306	6190	13508	13579	20467	20467					-0.01942088588543811
MKHFLLAVPRY	11	Unmodified	_MKHFLLAVPRY_					0	0	0			REV__PTEN|p.K267Rfs*9|6|0.32|ENSG00000171862|chr10:87958013-87958013|A/-|frameshift_variant	REV__PTEN|p.K267Rfs*9|6|0.32|ENSG00000171862|chr10:87958013-87958013|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	687.8903198242188	2	687.889375	1373.7642	0.55041	0.00037862	0.67577	0.00046485	1.2262	0.00084347	687.8897542491496	39.735	0.36416	39.735	39.553	39.917	0					18	6	4	0	0	0	0.74191	1	14912	14912		5.7319	5.7319	1	57314000	+		21307	13363	13509	13580	20468	20468					0.09226564130108272
MKHFLLAVPRY	11	Unmodified	_MKHFLLAVPRY_					0	0	0			REV__PTEN|p.K267Rfs*9|6|0.32|ENSG00000171862|chr10:87958013-87958013|A/-|frameshift_variant	REV__PTEN|p.K267Rfs*9|6|0.32|ENSG00000171862|chr10:87958013-87958013|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	689.0086059570312	2	687.889375	1373.7642	0.33724	0.00023198	0.6674	0.0004591	1.0046	0.00069108	687.889831900446	39.781	0.66862	39.707	39.432	40.101	-0.073372					30	12	4	0	0	0	0.74191	1	14915	14915		5.7319	0	1	75092000	+		21308	13363	13509	13580	20469	20469					0.09226564130108272
MKKILFIILC	10	Unmodified	_MKKILFIILC_					0	0	0		tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	407.9205322265625	3	407.920241	1220.73889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.615	1	11.615	11.115	12.115	0								0	0	0	0.97116	1	3671	3671		0	0	1				21309	18384	13510	13581	20470	20470					0.13735373283338959
MKKILFIILC	10	Unmodified	_MKKILFIILC_					0	0	0		tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	407.9202575683594	3	407.920241	1220.73889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.172	1	12.172	11.672	12.672	0								0	0	0	0.97116	1	3889	3889		0	0	1				21310	18384	13510	13581	20471	20471					0.13735373283338959
MKKILFIILC	10	Unmodified	_MKKILFIILC_					0	0	0		tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	407.92034912109375	3	407.920241	1220.73889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.705	1	12.705	12.205	13.205	0								0	0	0	0.97116	1	4092	4092		0	0	1				21311	18384	13510	13581	20472	20472					0.13735373283338959
MKKILFIILC	10	Unmodified	_MKKILFIILC_					0	0	0		tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	tr|U7SPW0|U7SPW0_FUSNUMarRfamilytranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01640PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	407.9202880859375	3	407.920241	1220.73889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.252	1	13.252	12.752	13.752	0								0	0	0	0.97116	1	4296	4296		0	0	1				21312	18384	13510	13581	20473	20473					0.13735373283338959
MKKILILLIRF	11	Unmodified	_MKKILILLIRF_					0	0	0		tr|U7SZG3|U7SZG3_FUSNUPutativemembraneproteininsertionefficiencyfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00742PE=3SV=1	tr|U7SZG3|U7SZG3_FUSNUPutativemembraneproteininsertionefficiencyfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00742PE=3SV=1	tr|U7SZG3|U7SZG3_FUSNUPutativemembraneproteininsertionefficiencyfactorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00742PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	694.4658813476562	2	694.464719	1386.91488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.804	1	62.675	62.175	63.175	-0.12924								0	0	0	0.96208	1	24347	24347		0	0	1				21313	18527	13511	13582	20474	20474					0.2369033078891789
MKKKKIKKK	9	Unmodified	_MKKKKIKKK_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MSMS	HCT116MG_D190212_S2	2	387.2749328613281	3	387.273895	1158.79985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.879	1	10.605	10.105	11.105	-0.27365								0	0	0	0.77025	1	3471	3471		0	0	1				21314	4055	13512	13583	20475	20475					0.2268064637776206
MKKKKIKKK	9	Unmodified	_MKKKKIKKK_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MSMS	HCT116MG_D190212_S2	2	387.27410888671875	3	387.273895	1158.79985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.584	1	59.424	58.924	59.924	-0.16012								0	0	0	0.77025	1	23042	23042		0	0	1				21315	4055	13512	13583	20476	20476					0.2268064637776206
MKKKKIKKK	9	Unmodified	_MKKKKIKKK_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MSMS	HCT116MG_D190212_S2	2	387.2741394042969	3	387.273895	1158.79985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.266	1	60.112	59.612	60.612	-0.15441								0	0	0	0.77025	1	23321	23321		0	0	1				21316	4055	13512	13583	20477	20477					0.2268064637776206
MKKKKIKKK	9	Unmodified	_MKKKKIKKK_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MSMS	HCT116MG_D190212_S2	2	387.27398681640625	3	387.273895	1158.79985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.502	1	61.36	60.86	61.86	-0.14227								0	0	0	0.77025	1	23822	23822		0	0	1				21317	4055	13512	13583	20478	20478					0.2268064637776206
MKKKKIKKK	9	Unmodified	_MKKKKIKKK_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MSMS	HCT116MG_D190212_S2	2	387.274169921875	3	387.273895	1158.79985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.071	1	61.935	61.435	62.435	-0.13585								0	0	0	0.77025	1	24052	24052		0	0	1				21318	4055	13512	13583	20479	20479					0.2268064637776206
MKKKKIKKK	9	Unmodified	_MKKKKIKKK_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MSMS	HCT116MG_D190212_S2	2	387.27410888671875	3	387.273895	1158.79985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.655	1	62.526	62.026	63.026	-0.12924								0	0	0	0.77025	1	24288	24288		0	0	1				21319	4055	13512	13583	20480	20480					0.2268064637776206
MKKKKIKKK	9	Unmodified	_MKKKKIKKK_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MSMS	HCT116MG_D190212_S4	4	387.2741394042969	3	387.273895	1158.79985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.243	1	60.983	60.483	61.483	-0.2602								0	0	0	0.77025	1	23099	23099		0	0	1				21320	4055	13512	13583	20481	20481					0.2268064637776206
MKKKKIKKK	9	Unmodified	_MKKKKIKKK_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MSMS	HCT116MG_D190212_S4	4	387.2739562988281	3	387.273895	1158.79985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.847	1	61.593	61.093	62.093	-0.25457								0	0	0	0.77025	1	23343	23343		0	0	1				21321	4055	13512	13583	20482	20482					0.2268064637776206
MKKKKIKKK	9	Unmodified	_MKKKKIKKK_					0	0	0		ENSG00000149308|ENST00000278612|NPAT;ENST00000530859.1_1_11:108029671-108040846:-|nuORF	ENSG00000149308|ENST00000278612|NPAT	ENSG00000149308|ENST00000278612|NPAT	MSMS	HCT116MG_D190212_S4	4	387.2742614746094	3	387.273895	1158.79985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.415	1	62.166	61.666	62.666	-0.24919								0	0	0	0.77025	1	23568	23568		0	0	1				21322	4055	13512	13583	20483	20483					0.2268064637776206
MKKQSDSVKGK	11	Unmodified	_MKKQSDSVKGK_					0	0	0		ENST00000486144.1_1_15:44084574-44085282:+|nuORF;nc|ENSG00000140264|P84101-4|SERF2;ENSG00000140264|ENST00000249786|SERF2;nc|ENSG00000140264|P84101-3|SERF2;nc|ENSG00000140264|P84101-2|SERF2	ENST00000486144.1_1_15:44084574-44085282:+|nuORF	ENST00000486144.1_1_15:44084574-44085282:+|nuORF	MSMS	HCT116MG_D190212_S1	1	618.5437622070312	2	618.342455	1234.67036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.343	1	22.343	21.843	22.843	0								0	0	0	0.90489	1	7906	7906		19.362	0.10495	1				21323	3657	13513	13584	20484	20484					0.06240800237151234
MKLKKLKKK	9	Unmodified	_MKLKKLKKK_					0	0	0		LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	382.269775390625	3	382.270262	1143.78896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.755	1	26.755	26.255	27.255	0								0	0	0	0.77025	1	9680	9680		0	0	1				21324	9309	13514	13585	20485	20485					0.22281244003465872
MKLKKLKKK	9	Unmodified	_MKLKKLKKK_					0	0	0		LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	382.2702331542969	3	382.270262	1143.78896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.321	1	40.019	39.519	40.519	-0.30161								0	0	0	0.77025	1	14965	14965		0	0	1				21325	9309	13514	13585	20486	20486					0.22281244003465872
MKLKKLKKK	9	Unmodified	_MKLKKLKKK_					0	0	0		LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	LRRIQ1|p.S1566L|1|0.33|ENSG00000133640|chr12:85154071-85154071|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	382.2702331542969	3	382.270262	1143.78896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.306	1	39.928	39.428	40.428	-0.37828								0	0	0	0.77025	1	14782	14782		0	0	1				21326	9309	13514	13585	20487	20487					0.22281244003465872
MKLVNIWLLLL	11	Unmodified	_MKLVNIWLLLL_					0	0	0		MBTPS1|p.F682Sfs*13|2|0.12|ENSG00000140943|chr16:84068367-84068367|G/-|frameshift_variant;ENSG00000140943|ENST00000343411|MBTPS1	MBTPS1|p.F682Sfs*13|2|0.12|ENSG00000140943|chr16:84068367-84068367|G/-|frameshift_variant	MBTPS1|p.F682Sfs*13|2|0.12|ENSG00000140943|chr16:84068367-84068367|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	678.3256225585938	2	678.427802	1354.84105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.323	1	58.323	57.823	58.823	0								0	0	0	0.96141	1	22464	22464		0.35063	0	1				21327	3692	13515	13586	20488	20488					0.17782362626599024
MKMKMSFKCS	10	Unmodified	_MKMKMSFKCS_					0	0	0			REV__PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	REV__PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	610.7869873046875	2	610.786558	1219.55856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.549	1	11.549	11.049	12.049	0								0	0	0	0.97116	1	3644	3644		0	0	1		+		21328	14388	13516	13587	20489	20489					-0.04243416707458891
MKMKMSFKCS	10	Unmodified	_MKMKMSFKCS_					0	0	0			REV__PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	REV__PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	610.786865234375	2	610.786558	1219.55856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.099	1	12.099	11.599	12.599	0								0	0	0	0.97116	1	3860	3860		0	0	1		+		21329	14388	13516	13587	20490	20490					-0.04243416707458891
MKMKMSFKCS	10	Unmodified	_MKMKMSFKCS_					0	0	0			REV__PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	REV__PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	610.7877197265625	2	610.786558	1219.55856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.238	1	13.238	12.738	13.738	0								0	0	0	0.97116	1	4291	4291		0	0	1		+		21330	14388	13516	13587	20491	20491					-0.04243416707458891
MKPAIAPK	8	Unmodified	_MKPAIAPK_					0	0	0		FGD6|p.K498Nfs*39|1|0.4|ENSG00000180263|chr12:95209790-95209790|T/-|frameshift_variant;FGD6|p.M414Wfs*11|1|0.26|ENSG00000180263|chr12:95210044-95210044|T/-|frameshift_variant;FGD6|p.S531Vfs*6|1|0.33|ENSG00000180263|chr12:95209693-95209693|T/-|frameshift_variant;nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6	FGD6|p.K498Nfs*39|1|0.4|ENSG00000180263|chr12:95209790-95209790|T/-|frameshift_variant	FGD6|p.K498Nfs*39|1|0.4|ENSG00000180263|chr12:95209790-95209790|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	428.261474609375	2	428.259674	854.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.772	1	51.422	50.922	51.922	-0.35028								0	0	0	0.8837	1	19279	19279		2.3027	0	1				21331	9156	13517	13588	20492	20492					0.0717223823896802
MKPPVKRPEL	10	Unmodified	_MKPPVKRPEL_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MSMS	HCT116MG_D190212_S4	4	597.8570556640625	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.258	1	51.913	51.413	52.413	-0.34538								0	0	0	0.95507	1	19475	19475		3.5965	0	1				21332	2359	13518	13589	20493	20493					0.10634899830415634
MKRKRKTT	8	Unmodified	_MKRKRKTT_					0	0	0		ENST00000277225.9_3_9:109688360-109688396:+|nuORF	ENST00000277225.9_3_9:109688360-109688396:+|nuORF	ENST00000277225.9_3_9:109688360-109688396:+|nuORF	MSMS	HCT116MG_D190212_S4	4	350.2174377441406	3	350.218449	1047.63352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.33	1	38.949	38.449	39.449	-0.38055								0	0	0	0.8837	1	14447	14447		1.4819	0.28856	1				21333	6931	13519	13590	20494	20494					0.11160593201907432
MKSELKWKK	9	Unmodified	_MKSELKWKK_					0	0	0			REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF	REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	589.3432006835938	2	589.341726	1176.6689	0.70132	0.00041332	1.2695	0.00074816	1.9708	0.0011615	589.34223617436	53.075	1.2846	53.075	52.28	53.565	0					36	24	2	0	0	0	0.69954	1	20071	20071		5.2969	0	1	13546000	+		21334	16459	13520	13591	20495	20495					0.08763210939059718
MKSKKLKKKI	10	Unmodified	_MKSKKLKKKI_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MSMS	HCT116MG_D190212_S2	2	616.4192504882812	2	616.417768	1230.82098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.291	1	58.121	57.621	58.621	-0.1703								0	0	0	0.97116	1	22525	22525		0	0	1				21335	3246	13521	13592	20496	20496					0.21480611686615703
MKSKKLKKKI	10	Unmodified	_MKSKKLKKKI_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MSMS	HCT116MG_D190212_S4	4	616.4191284179688	2	616.417768	1230.82098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.306	1	58.017	57.517	58.517	-0.28879								0	0	0	0.97116	1	21910	21910		0	0	1				21336	3246	13521	13592	20497	20497					0.21480611686615703
MKVKKLPM	8	Unmodified	_MKVKKLPM_					0	0	0		ENSG00000152484|ENST00000282344|USP12	ENSG00000152484|ENST00000282344|USP12	ENSG00000152484|ENST00000282344|USP12	MSMS	HCT116MG_D190212_S4	4	487.8001708984375	2	487.798109	973.581665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.775	1	48.41	47.91	48.91	-0.365								0	0	0	0.8837	1	18071	18071		5.2307	0	1				21337	4153	13522	13593	20498	20498					0.09381713463801589
MLAGARLR	8	Unmodified	_MLAGARLR_					0	0	0			REV__ENSG00000230778|ENST00000434396|ANKRD63	REV__ENSG00000230778|ENST00000434396|ANKRD63	MSMS	HCT116MG_D190212_S4	4	444.2666320800781	2	444.265822	886.517091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.968	1	41.591	41.091	42.091	-0.37637								0	0	0	0.8837	1	15407	15407		5.2307	0	1		+		21338	14320	13523	13594	20499	20499					0.06929274702019939
MLALPLIILV	10	Unmodified	_MLALPLIILV_					0	0	0			REV__SLC38A5|p.F267Lfs*54|1|0.17|ENSG00000017483|chrX:48461768-48461768|A/-|frameshift_variant	REV__SLC38A5|p.F267Lfs*54|1|0.17|ENSG00000017483|chrX:48461768-48461768|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	548.7178955078125	2	548.364139	1094.71372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.838	1	45.527	45.027	46.027	-0.31094								0	0	0	0.95179	1	17174	17174		4.3292	0	1		+		21339	10545	13524	13595	20500	20500					0.17015641752391275
MLAVKRMLP	9	Unmodified	_MLAVKRMLP_					0	0	0		tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	530.3004760742188	2	529.81429	1057.61403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.951	1	41.882	41.382	42.382	-0.068199								0	0	0	0.66309	1	15866	15866		20.871	5.103	1				21340	18380	13525	13596	20501	20501					0.0875250086678534
MLDDRAYLV	9	Unmodified	_MLDDRAYLV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;NUP188|p.L837Wfs*19|1|0.15|ENSG00000095319|chr9:128988157-128988157|C/-|frameshift_variant	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	HCT116MG_D190212_S2	2	548.2787475585938	2	548.278792	1094.54303	0.39868	0.00021859	-0.23052	-0.00012639	0.16816	9.2196E-05	548.278461172944	45.632	0.30777	45.53	45.35	45.658	-0.1014					8	5	2	0	0	0	0.50572	1	17395	17395		16.566	4.3252	1	20315000			21341	1607	13526	13597	20502	20502					-0.00045920637057861313
MLDFVAYRPSR	11	Unmodified	_MLDFVAYRPSR_					0	0	0			REV__ENSG00000036448|ENST00000262113|MYOM2	REV__ENSG00000036448|ENST00000262113|MYOM2	MSMS	HCT116MG_D190212_S3	3	677.8490600585938	2	677.850447	1353.68634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.489	1	30.239	29.739	30.739	-0.24946								0	0	0	0.94145	1	11107	11107		10.8	2.0541	1		+		21342	10580	13527	13598	20503	20503					0.023645064740321686
MLDHQPPQY	9	Oxidation (M)	_M(Oxidation (M))LDHQPPQY_		M(1)LDHQPPQY		M(120)LDHQPPQY	0	0	1		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	HCT116MG_D190212_S1	1	572.758544921875	2	572.758223	1143.50189	0.34537	0.00019781	0.15806	9.0532E-05	0.50343	0.00028834	572.7582113912193	25.603	0.62681	25.603	25.405	26.032	0					30	11	3	0	0	0	0.0067688	1	9211	9211		122.18	86.135	1	29496000			21343	2173	13528	13599	20504	20504		42			-0.06411681676490844
MLDHQPPQY	9	Oxidation (M)	_M(Oxidation (M))LDHQPPQY_		M(1)LDHQPPQY		M(100)LDHQPPQY	0	0	1		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	HCT116MG_D190212_S2	2	572.7583618164062	2	572.758223	1143.50189	0.55989	0.00032068	-0.015814	-9.0574E-06	0.54408	0.00031162	572.7581390646794	25.983	0.88198	25.613	25.394	26.276	-0.36914					33	16	3	0	0	0	0.01405	1	9387	9387		103.35	81.607	1	53805000			21344	2173	13528	13599	20505	20505		42			-0.06411681676490844
MLDHQPPQY	9	Unmodified	_MLDHQPPQY_					0	0	0		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	HCT116MG_D190212_S1	1	564.76123046875	2	564.760766	1127.50698	0.61413	0.00034684	-0.17176	-9.7006E-05	0.44236	0.00024983	564.7606282193539	28.772	1.2528	28.772	28.588	29.841	0					60	23	4	0	0	0	0.0040527	3	10471	10471;10711;10714		149.91	115.51	1	141060000			21345	2173	13528	13600	20506;20507;20508	20506					-0.051673778138820126
MLDHQPPQY	9	Unmodified	_MLDHQPPQY_					0	0	0		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	HCT116MG_D190212_S2	2	564.7606201171875	2	564.760766	1127.50698	0.49742	0.00028092	0.099937	5.6441E-05	0.59735	0.00033736	564.7608088272681	29.104	1.2873	28.788	28.606	29.893	-0.31613					73	24	4	0	0	0	0.0058997	4	10856	10628;10747;10827;10856		129.77	83.966	1	395050000			21346	2173	13528	13600	20509;20510;20511;20512	20512					-0.051673778138820126
MLDHQPPQY	9	Unmodified	_MLDHQPPQY_					0	0	0		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	HCT116MG_D190212_S2	2	1128.5150146484375	1	1128.51426	1127.50698	0.58734	0.00066282	-0.17441	-0.00019683	0.41293	0.000466	1128.5140822239862	29.138	0.358	28.822	28.657	29.015	-0.31613					9	6	2	0	0	0	0.097615	1	10674	10674		58.679	34.658	1	19142000			21347	2173	13528	13600	20513	20513					-0.051673778138820126
MLDHQPPQY	9	Unmodified	_MLDHQPPQY_					0	0	0		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2;SMARCD2|p.P489Lfs*19|1|0.36|ENSG00000108604|chr17:63833145-63833145|G/-|frameshift_variant	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-MSMS	HCT116MG_D190212_S3	3	564.7614135742188	2	564.760766	1127.50698	0.5285	0.00029847	-0.33495	-0.00018916	0.19355	0.00010931	564.7606045760778	29.177	0.72943	28.955	28.733	29.463	-0.22195					26	13	3	0	0	0	0.0063854	1	10587	10587		125.53	93.224	1	10433000			21348	2173	13528	13600	20514	20514					-0.051673778138820126
MLDSHEELY	9	Unmodified	_MLDSHEELY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	568.7509155273438	2	568.750064	1135.48558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.725	1	37.725	37.225	38.225	0								0	0	0	0.64498	1	14103	14103		21.747	0.15649	1				21349	741	13529	13601	20515	20515					-0.07674807633247838
MLDSHEELY	9	Unmodified	_MLDSHEELY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	568.2686157226562	2	568.750064	1135.48558	0.20088	0.00011425	0.1625	9.2423E-05	0.36338	0.00020667	568.7504485437385	37.718	0.2567	37.615	37.486	37.743	-0.10318					8	4	2	0	0	0	0.059866	1	14172	14172		77.984	54.836	1	28594000			21350	741	13529	13601	20516	20516					-0.07674807633247838
MLDSHEELY	9	Unmodified	_MLDSHEELY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	569.2528076171875	2	568.750064	1135.48558	0.54476	0.00030983	0.55132	0.00031356	1.0961	0.0006234	568.7503575020415	37.883	0.25864	37.581	37.523	37.781	-0.30137					18	11	2	0	0	0	0.005725	2	14018	14018;14020		131.3	101.07	1	19278000			21351	741	13529	13601	20517;20518	20517					-0.07674807633247838
MLEILFELL	9	Unmodified	_MLEILFELL_					0	0	0		ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	MSMS	HCT116MG_D190212_S4	4	374.2169189453125	3	374.2156	1119.62497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.549	1	49.187	48.687	49.687	-0.36213								0	0	0	0.76973	1	18383	18383		0.96228	0.26461	1				21352	2560	13530	13602	20519	20519					0.06994181722075155
MLEKMGWS	8	Unmodified	_MLEKMGWS_					0	0	0		ENSG00000254093|ENST00000314787|PINX1;ENST00000524026.1_1_8:10692103-10697380:-|nuORF;ENST00000520018.2_1_8:10691012-10697347:-|nuORF;nc|ENSG00000258724|Q96BK5-2|PINX1;nc|ENSG00000171056|Q9BT81-2|SOX7	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MSMS	HCT116MG_D190212_S2	2	491.2300720214844	2	491.230256	980.445959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.832	1	61.69	61.19	62.19	-0.14227								0	0	0	0.8837	1	23956	23956		2.5775	0	1				21353	6593	13531	13603	20520	20520					-0.04504606117666299
MLEVMDLP	8	Unmodified	_MLEVMDLP_					0	0	0			REV__AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant	REV__AARS2|p.T871Nfs*21|1|0.42|ENSG00000124608|chr6:44301451-44301452|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	474.232177734375	2	474.232464	946.450376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.745	1	53.445	52.945	53.945	-0.29946								0	0	0	0.8837	1	20348	20348		5.7604	2.8712	1		+		21354	9813	13532	13604	20521	20521					-0.024991416947614198
MLFGHPLLV	9	Unmodified	_MLFGHPLLV_					0	0	0		USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant	USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7940063476562	2	513.793881	1025.57321	0.32198	0.00016543	0.0095426	4.9029E-06	0.33153	0.00017034	513.7937945400577	56.416	0.20745	56.233	56.104	56.312	-0.18261					5	3	2	0	0	0	0.022679	1	21795	21795		93.763	65.59	1	29026000			21355	1831	13533	13605	20522	20522					0.06144482818808683
MLFGHPLLV	9	Unmodified	_MLFGHPLLV_					0	0	0		USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant	USP11|p.D655Gfs*2|1|0.34|ENSG00000102226|chrX:47244537-47244538|-/G|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	513.793881	1025.57321	0.39136	0.00020108	-0.1617	-8.308E-05	0.22966	0.000118	513.793766421243	56.338	0.15538	56.338	56.222	56.377	0	0.052216	-0.00014721	NaN	93.763	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6978000			21356	1831	13533	13605							0.06144482818808683
MLFVVFIL	8	Unmodified	_MLFVVFIL_					0	0	0			REV__ENSG00000172289|ENST00000307552|OR10V1	REV__ENSG00000172289|ENST00000307552|OR10V1	MSMS	HCT116MG_D190212_S4	4	491.29656982421875	2	491.295725	980.576897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.523	1	45.151	44.651	45.651	-0.37266								0	0	0	0.8837	1	16796	16796		6.3541	0	1		+		21357	13381	13534	13606	20523	20523					0.08583152592677834
MLGLATLIET	10	Unmodified	_MLGLATLIET_					0	0	0			REV__nc|ENSG00000172350|Q9H172-4|ABCG4	REV__nc|ENSG00000172350|Q9H172-4|ABCG4	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.841796875	2	531.299193	1060.58383	0.4284	0.00022761	2.0739	0.0011019	2.5023	0.0013295	531.3006346915482	51.33	0.30896	51.151	50.966	51.275	-0.17869					7	5	2	0	0	0	0.29442	1	19719	19719		20.454	2.3186	1	22919000	+		21358	13384	13535	13607	20524	20524					0.0559642068260473
MLHFVEELLN	10	Unmodified	_MLHFVEELLN_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MSMS	HCT116MG_D190212_S2	2	623.32177734375	2	622.820824	1243.62709	0.49663	0.00030931	-0.43923	-0.00027356	0.057408	3.5755E-05	623.321899435169	41.351	0.51156	41.283	41.037	41.549	-0.068199					17	9	3	0	0	0	0.67188	1	15628	15628		22.736	0.98964	1	53305000	+		21359	13029	13536	13608	20525	20525					0.015026104598746315
MLHQACDQ	8	Unmodified	_MLHQACDQ_					0	0	0			REV__nc|ENSG00000116147|Q92752-2|TNR	REV__nc|ENSG00000116147|Q92752-2|TNR	MSMS	HCT116MG_D190212_S1	1	473.1994323730469	2	473.199487	944.384421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.781	1	56.781	56.281	57.281	0								0	0	0	0.8837	1	21836	21836		2.8892	0	1		+		21360	11576	13537	13609	20526	20526					-0.08999537816964676
MLIERIVRL	9	Unmodified	_MLIERIVRL_					0	0	0		CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant;ENSG00000165813|ENST00000369287|CCDC186	CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant	CCDC186|p.N867Ifs*4|1|0.18|ENSG00000165813|chr10:114125899-114125899|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	572.14111328125	2	571.857544	1141.70053	0.38883	0.00022236	-0.54833	-0.00031356	-0.1595	-9.121E-05	571.8572232455635	50.336	0.20895	50.164	50.036	50.245	-0.1719					5	3	2	0	0	0	0.16566	1	19279	19279		45.7	22.551	1	16364000			21361	348	13538	13610	20527	20527					0.13535203693004405
MLIKLYIIRY	10	Unmodified	_MLIKLYIIRY_					0	0	0			REV__ENST00000589761.1_1_17:58378837-58469252:-|nuORF	REV__ENST00000589761.1_1_17:58378837-58469252:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	663.906005859375	2	663.404327	1324.7941	0.47953	0.00031812	-0.23312	-0.00015465	0.24641	0.00016347	663.9060913273231	55.619	0.46637	55.433	55.225	55.691	-0.18565					10	8	2	0	0	0	0.30991	1	21492	21492		1.6526	0	1	16446000	+		21362	16681	13539	13611	20528	20528					0.14469503075429202
MLIQENQEL	9	Unmodified	_MLIQENQEL_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;WTAP|p.R162Q|1|0.17|ENSG00000146457|chr6:159753492-159753492|G/A|missense_variant	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S2	2	559.28173828125	2	559.281531	1116.54851	0.64152	0.00035879	-0.64288	-0.00035955	-0.0013643	-7.6305E-07	559.2814381854341	44.662	0.26268	44.578	44.428	44.691	-0.084797					8	4	3	0	0	0	0.26536	1	16998	16998		34.402	3.7652	1	12534000			21363	3950	13540	13612	20529	20529					-0.005102418451997437
MLKGRLLFA	9	Unmodified	_MLKGRLLFA_					0	0	0			REV__nc|ENSG00000145850|Q96H15-2|TIMD4	REV__nc|ENSG00000145850|Q96H15-2|TIMD4	MSMS	HCT116MG_D190212_S4	4	350.2171325683594	3	350.216045	1047.62631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.909	1	33.525	33.025	34.025	-0.38426								0	0	0	0.7694	1	12361	12361		2.9952	1.151	1		+		21364	12463	13541	13613	20530	20530					0.10439860601468354
MLKGRLLFA	9	Unmodified	_MLKGRLLFA_					0	0	0			REV__nc|ENSG00000145850|Q96H15-2|TIMD4	REV__nc|ENSG00000145850|Q96H15-2|TIMD4	MSMS	HCT116MG_D190212_S4	4	350.2174377441406	3	350.216045	1047.62631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.458	1	48.091	47.591	48.591	-0.36728								0	0	0	0.76991	1	17948	17948		1.1933	0.735	1		+		21365	12463	13541	13613	20531	20531					0.10439860601468354
MLKTRAKGF	9	Unmodified	_MLKTRAKGF_					0	0	0		ENST00000603513.1_1_7:130039868-130040375:-|nuORF	ENST00000603513.1_1_7:130039868-130040375:-|nuORF	ENST00000603513.1_1_7:130039868-130040375:-|nuORF	MSMS	HCT116MG_D190212_S4	4	351.2014465332031	3	351.20755	1050.60082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.902	1	33.518	33.018	34.018	-0.38426								0	0	0	0.76948	1	12358	12358		2.7352	0.64919	1				21366	9103	13542	13614	20532	20532					0.07754386079045616
MLLIKPFI	8	Unmodified	_MLLIKPFI_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4;ATP6V0A4|p.R663G|1|0.17|ENSG00000105929|chr7:138728784-138728784|T/C|missense_variant	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	HCT116MG_D190212_S4	4	487.80902099609375	2	487.808999	973.603446	0.018999	9.2678E-06	-0.046531	-2.2698E-05	-0.027532	-1.3431E-05	487.8088421169134	55.756	0.36455	55.444	55.194	55.558	-0.312					10	6	2	0	0	0	0.86388	1	20877	20877		2.8892	0	1	1966100			21367	2046	13543	13615	20533	20533					0.11558841484009008
MLLIKPFI	8	Unmodified	_MLLIKPFI_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4;ATP6V0A4|p.R663G|1|0.17|ENSG00000105929|chr7:138728784-138728784|T/C|missense_variant	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MATCH	HCT116MG_D190212_S2	2		2	487.808999	973.603446	0.24571	0.00011986	-0.56278	-0.00027453	-0.31707	-0.00015467	487.8089347300035	55.526	0.36001	55.34	55.123	55.483	-0.18565	-0.052129	-0.00020915	NaN	2.8892	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7257500			21368	2046	13543	13615							0.11558841484009008
MLLKKGADP	9	Unmodified	_MLLKKGADP_					0	0	0		ENSG00000164512|ENST00000341048|ANKRD55;ANKRD55|p.Q337Rfs*111|1|0.31|ENSG00000164512|chr5:56111739-56111739|G/-|frameshift_variant	ENSG00000164512|ENST00000341048|ANKRD55	ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	486.7826843261719	2	486.78097	971.547388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.167	1	43.793	43.293	44.293	-0.37373								0	0	0	0.76718	1	16262	16262		10.824	2.2306	1				21369	4700	13544	13616	20534	20534					0.060475885765413295
MLLLAAAFLV	10	Unmodified	_MLLLAAAFLV_					0	0	0		ENST00000590056.1_1_18:61033898-61034411:-|nuORF;ENST00000587292.1_1_18:61033532-61034411:-|nuORF;ENST00000585456.1_1_18:61026935-61034351:-|nuORF;ENST00000589530.5_1_18:61022616-61034411:-|nuORF;nc|ENSG00000119537|Q06136-2|KDSR;ENSG00000119537|ENST00000645214|KDSR	ENST00000590056.1_1_18:61033898-61034411:-|nuORF	ENST00000590056.1_1_18:61033898-61034411:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	531.3738403320312	2	531.325014	1060.63547	0.45936	0.00024407	0.016093	8.5505E-06	0.47545	0.00025262	531.3249258040651	52.459	1.6628	52.119	51.679	53.342	-0.34023					83	31	4	0	0	0	0.87641	1	19887	19887		4.3292	2.2695	1	81848000			21370	2650	13545	13617	20535	20535					0.10758209167124733
MLLLYVGLP	9	Unmodified	_MLLLYVGLP_					0	0	0		ENST00000474575.1_1_3:52009151-52012413:+|nuORF;ENSG00000248487|ENST00000273596|ABHD14A	ENST00000474575.1_1_3:52009151-52012413:+|nuORF	ENST00000474575.1_1_3:52009151-52012413:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	509.80413818359375	2	509.803914	1017.59328	0.31675	0.00016148	0.18323	9.3409E-05	0.49998	0.00025489	509.8037508404217	47.185	2.1092	46.814	45.875	47.984	-0.37038					157	59	5	0	0	0	0.74258	1	17111	17111		2.3027	0	1	34949000			21371	6574	13546	13618	20536	20536					0.08518233758786664
MLLRRKAKL	9	Unmodified	_MLLRRKAKL_					0	0	0			REV__ENSG00000148343|ENST00000684074|MIGA2	REV__ENSG00000148343|ENST00000684074|MIGA2	MSMS	HCT116MG_D190212_S2	2	565.0589599609375	2	564.873528	1127.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.498	1	29.197	28.697	29.697	-0.30095								0	0	0	0.7696	1	10808	10808		2.3027	0	1		+		21372	12539	13547	13619	20537	20537					0.17374616166807755
MLLVISSV	8	Unmodified	_MLLVISSV_					0	0	0			REV__OR2F1|p.A300Pfs*12|1|0.43|ENSG00000213215|chr7:143960864-143960864|G/-|frameshift_variant	REV__OR2F1|p.A300Pfs*12|1|0.43|ENSG00000213215|chr7:143960864-143960864|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	431.25946044921875	2	431.259339	860.504126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.703	1	32.703	32.203	33.203	0								0	0	0	0.8837	1	12077	12077		2.8892	0	1		+		21373	14252	13548	13620	20538	20538					0.06829398799266073
MLNEHDFEV	9	Unmodified	_MLNEHDFEV_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1;nc|ENSG00000012048|P38398-6|BRCA1;nc|ENSG00000012048|P38398-5|BRCA1;nc|ENSG00000012048|P38398-3|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	HCT116MG_D190212_S2	2	567.2505493164062	2	567.250231	1132.48591	0.60511	0.00034325	0.0041771	2.3695E-06	0.60929	0.00034562	567.2502238198734	44.91	0.31155	44.825	44.639	44.95	-0.085541					10	5	3	0	0	0	0.082877	1	17091	17091		61.602	44.66	1	23227000			21374	903	13549	13621	20539	20539					-0.07503387913402548
MLNKIKMP	8	Unmodified	_MLNKIKMP_					0	0	0		ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	ANAPC7|p.K150Nfs*22|1|0.27|ENSG00000196510|chr12:110395161-110395161|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	487.7796630859375	2	487.779916	973.545279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.974	1	24.7	24.2	25.2	-0.27428								0	0	0	0.8217	1	8827	8827		20.871	3.7583	1				21375	126	13550	13622	20540	20540					0.057448365670666135
MLPEQLYFLQ	10	Unmodified	_MLPEQLYFLQ_					0	0	0		MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant;ENSG00000066697|ENST00000395067|MSANTD3;nc|ENSG00000066697|Q96H12-2|MSANTD3;nc|ENSG00000241697|Q8IYR6-2|TMEFF1	MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant	MSANTD3|p.K195Rfs*18|1|0.44|ENSG00000066697|chr9:100450717-100450717|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	641.3285522460938	2	641.331024	1280.6475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.482	1	58.197	57.697	58.697	-0.28536								0	0	0	0.95351	1	21982	21982		3.9444	0.3479	1				21376	1175	13551	13623	20541	20541					0.018397811196791736
MLQIVIVRLF	10	Unmodified	_MLQIVIVRLF_					0	0	0			REV__ENST00000491597.5_1_3:154801953-154802933:+|nuORF	REV__ENST00000491597.5_1_3:154801953-154802933:+|nuORF	MSMS	HCT116MG_D190212_S4	4	411.2589111328125	3	411.258022	1230.75224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.596	1	49.234	48.734	49.734	-0.36213								0	0	0	0.96291	1	18402	18402		0.77653	0	1		+		21377	16043	13552	13624	20542	20542					0.1460894738688694
MLQREKEAE	9	Unmodified	_MLQREKEAE_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-MSMS	HCT116MG_D190212_S3	3	378.5256652832031	3	378.525496	1132.55466	-0.22758	-8.6143E-05	0.067003	2.5363E-05	-0.16057	-6.0781E-05	378.5254687406257	20.914	0.31225	20.949	20.818	21.131	0.034473					9	5	2	0	0	0	0.12205	1	7264	7264		42.312	15.224	1	13554000			21378	2000	13553	13625	20543	20543					-0.0063172361371925945
MLQREKEAE	9	Unmodified	_MLQREKEAE_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	378.525496	1132.55466	-0.28086	-0.00010631	-0.47477	-0.00017971	-0.75562	-0.00028602	378.52537488453356	21.682	0.25947	21.297	21.167	21.427	-0.38503	0.18563	-0.00031101	NaN	42.312	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11007000			21379	2000	13553	13625							-0.0063172361371925945
MLQVITLLTCT	11	Unmodified	_MLQVITLLTCT_					0	0	0		nc|ENSG00000117501|Q5TGP6|MROH9;MROH9|p.L759*|1|0.19|ENSG00000117501|chr1:171025412-171025412|T/-|frameshift_variant;MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant;ENSG00000117501|ENST00000367759|MROH9	nc|ENSG00000117501|Q5TGP6|MROH9	nc|ENSG00000117501|Q5TGP6|MROH9	MULTI-SECPEP	HCT116MG_D190212_S4	4	618.8429565429688	2	618.340535	1234.66652	0.65372	0.00040422	0.27633	0.00017086	0.93004	0.00057508	618.842267652903	46.829	0.31146	46.458	46.328	46.64	-0.37134					7	5	2	0	0	0	0.36367	1	17336	17336		5.7319	0	1	3601500			21380	2578	13554	13626	20544	20544					0.05856994419082184
MLREIRML	8	Unmodified	_MLREIRML_					0	0	0		MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant;ENSG00000171495|ENST00000399564|MROH2B;MROH2B|p.S691Lfs*6|1|0.45|ENSG00000171495|chr5:41038879-41038879|A/-|frameshift_variant	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MROH2B|p.D1229Tfs*15|1|0.23|ENSG00000171495|chr5:41007378-41007378|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	531.3015747070312	2	531.301547	1060.58854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.988	1	44.615	44.115	45.115	-0.37326								0	0	0	0.8837	1	16580	16580		6.3541	0	1				21381	5199	13555	13627	20545	20545					0.06067026344362603
MLSIPAVLYI	10	Unmodified	_MLSIPAVLYI_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MSMS	HCT116MG_D190212_S4	4	560.7445678710938	2	560.327753	1118.64095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.674	1	40.296	39.796	40.796	-0.37828								0	0	0	0.95351	1	14931	14931		3.9444	0	1		+		21382	12914	13556	13628	20546	20546					0.08637887958957435
MLSVQPKG	8	Unmodified	_MLSVQPKG_					0	0	0		ENST00000524379.1_1_11:8248475-8284909:-|nuORF;nc|ENSG00000166407|P25800-2|LMO1;ENSG00000166407|ENST00000335790|LMO1	ENST00000524379.1_1_11:8248475-8284909:-|nuORF	ENST00000524379.1_1_11:8248475-8284909:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	430.2393798828125	2	430.238938	858.463324	0.00044882	1.931E-07	0.32611	0.0001403	0.32656	0.0001405	430.2390889448871	35.554	0.25733	35.412	35.283	35.541	-0.14245					6	4	2	0	0	0	0.79062	1	13307	13307		12.532	0	1	14084000			21383	4849	13557	13629	20547	20547					0.028430574796402652
MLTGCCNN	8	Unmodified	_MLTGCCNN_					0	0	0		ENST00000341618.8_2_21:30547763-30547895:+|nuORF	ENST00000341618.8_2_21:30547763-30547895:+|nuORF	ENST00000341618.8_2_21:30547763-30547895:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	428.2499694824219	2	428.161516	854.308479	0.2103	9.004E-05	-0.1516	-6.4908E-05	0.058697	2.5132E-05	428.16134183746965	26.208	0.3106	25.847	25.713	26.024	-0.36164					11	5	3	0	0	0	0.33109	1	9524	9524		0.6015	0	1	40428000			21384	7222	13558	13630	20548	20548					-0.12450257988746216
MLVFFAAK	8	Unmodified	_MLVFFAAK_					0	0	0		ENSG00000196932|ENST00000399298|TMEM26;ENST00000507507.1_1_10:63170082-63173364:-|nuORF	ENSG00000196932|ENST00000399298|TMEM26	ENSG00000196932|ENST00000399298|TMEM26	MULTI-MSMS	HCT116MG_D190212_S1	1	926.5167846679688	1	926.516822	925.509546	0.82037	0.00076009	-0.38379	-0.00035558	0.43659	0.00040451	926.5163138306425	58.337	0.54461	58.337	58.173	58.717	0					18	10	2	0	0	0	0.86564	1	22491	22491		2.5775	1.7838	1	288570000			21385	6106	13559	13631	20549	20549					0.04381122381721525
MLVKFRKKI	9	Unmodified	_MLVKFRKKI_					0	0	0			REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MSMS	HCT116MG_D190212_S1	1	388.254150390625	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.051	1	33.051	32.551	33.551	0								0	0	0	0.76991	1	12218	12218		1.1933	0	1		+		21386	16469	13560	13632	20550	20550					0.16760384452322796
MLVKFRKKI	9	Unmodified	_MLVKFRKKI_					0	0	0			REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MSMS	HCT116MG_D190212_S1	1	388.25372314453125	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.036	1	34.036	33.536	34.536	0								0	0	0	0.77018	1	12616	12616		0.26902	0	1		+		21387	16469	13560	13632	20551	20551					0.16760384452322796
MLVKFRKKI	9	Unmodified	_MLVKFRKKI_					0	0	0			REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MSMS	HCT116MG_D190212_S3	3	388.25396728515625	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.175	1	37.874	37.374	38.374	-0.30137								0	0	0	0.77018	1	14132	14132		0.26902	0	1		+		21388	16469	13560	13632	20552	20552					0.16760384452322796
MLVKFRKKI	9	Unmodified	_MLVKFRKKI_					0	0	0			REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2541809082031	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.27	1	27.939	27.439	28.439	-0.33138								0	0	0	0.77018	1	10158	10158		0.26902	0	1		+		21389	16469	13560	13632	20553	20553					0.16760384452322796
MLVKFRKKI	9	Unmodified	_MLVKFRKKI_					0	0	0			REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.25396728515625	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.861	1	28.52	28.02	29.02	-0.34059								0	0	0	0.76991	1	10397	10397		1.1933	0.98648	1		+		21390	16469	13560	13632	20554	20554					0.16760384452322796
MLVKFRKKI	9	Unmodified	_MLVKFRKKI_					0	0	0			REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	REV__ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.25439453125	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.001	1	57.712	57.212	58.212	-0.28879								0	0	0	0.77018	1	21786	21786		0.26902	0.18567	1		+		21391	16469	13560	13632	20555	20555					0.16760384452322796
MMDESDEDFKE	11	Unmodified	_MMDESDEDFKE_					0	0	0		SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant;SLX4|p.P1414Hfs*36|1|0.43|ENSG00000188827|chr16:3589397-3589397|G/-|frameshift_variant;ENSG00000188827|ENST00000294008|SLX4;ENST00000466154.5_1_16:3652081-3658965:-|nuORF	SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant	SLX4|p.P1420Qfs*30|1|0.59|ENSG00000188827|chr16:3589379-3589379|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	459.1722106933594	3	459.172459	1374.49555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7348	1	1.7348	1.2348	2.2348	0								0	0	0	0.9619	1	524	524		0.094841	0	1				21392	6005	13561	13633	20556	20556					-0.17672032480868438
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_		M(1)M(1)DPNSTQRY		M(97)M(97)DPNSTQRY	0	0	2		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S1	1	637.3310546875	2	637.760637	1273.50672	0.59041	0.00037654	0.57538	0.00036696	1.1658	0.0007435	637.7609306097276	19.019	0.26066	19.019	18.871	19.131	0					7	4	2	0	0	0	0.036884	1	6584	6584		96.936	84.695	1	2254400			21393	2852	13562	13634	20557	20557		60;61			-0.11909165596034654
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_		M(1)M(1)DPNSTQRY		M(95)M(95)DPNSTQRY	0	0	2		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S2	2	637.7608032226562	2	637.760637	1273.50672	0.47525	0.00030309	-0.41807	-0.00026663	0.057177	3.6466E-05	637.7605196901574	19.506	0.25959	19.137	18.992	19.252	-0.3695					10	4	3	0	0	0	0.039616	1	6786	6786		94.909	77.796	1	11586000			21394	2852	13562	13634	20558	20558		60;61			-0.11909165596034654
MMDPNSTQRY	10	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))DPNSTQRY_		M(1)M(1)DPNSTQRY		M(82)M(82)DPNSTQRY	0	0	2		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S4	4	637.7607421875	2	637.760637	1273.50672	0.38828	0.00024763	-0.2047	-0.00013055	0.18358	0.00011708	637.760561792133	19.059	0.31193	18.873	18.713	19.025	-0.18674					13	5	4	0	0	0	0.060266	2	6450	6450;6461		81.915	68.873	1	3507900			21395	2852	13562	13634	20559;20560	20559		60;61			-0.11909165596034654
MMDPNSTQRY	10	Oxidation (M)	_MM(Oxidation (M))DPNSTQRY_		M(0.052)M(0.948)DPNSTQRY		M(-13)M(13)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S1	1	629.7637939453125	2	629.76318	1257.51181	0.69299	0.00043642	-0.39409	-0.00024819	0.2989	0.00018823	629.7629832717342	22.194	0.26108	22.194	22.063	22.324	0					11	4	3	0	0	0	0.05194	1	7858	7858		85.764	71.858	2	12426000			21396	2852	13562	13635	20561	20561		60;61			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_M(Oxidation (M))MDPNSTQRY_		M(0.7)M(0.3)DPNSTQRY		M(3.7)M(-3.7)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MSMS	HCT116MG_D190212_S1	1	629.7627563476562	2	629.76318	1257.51181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.059	1	23.059	22.559	23.559	0								0	0	0	0.047145	1	8194	8194		107.1	89.987	2				21397	2852	13562	13635	20562	20562		60;61			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_MM(Oxidation (M))DPNSTQRY_		M(0.003)M(0.997)DPNSTQRY		M(-26)M(26)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S2	2	629.7630615234375	2	629.76318	1257.51181	0.55291	0.0003482	-0.41872	-0.00026369	0.13419	8.451E-05	629.7629160061499	22.669	0.31149	22.284	22.103	22.414	-0.3852					13	5	4	0	0	0	0.0096989	1	8044	8044		150.62	117.17	2	62100000			21398	2852	13562	13635	20563	20563		60;61			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_M(Oxidation (M))MDPNSTQRY_		M(0.968)M(0.032)DPNSTQRY		M(15)M(-15)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MSMS	HCT116MG_D190212_S2	2	629.763427734375	2	629.76318	1257.51181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.505	1	23.122	22.622	23.622	-0.38324								0	0	0	1.3625E-06	1	8380	8380		150.62	117.83	2				21399	2852	13562	13635	20564	20564		60;61			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_MM(Oxidation (M))DPNSTQRY_		M(0.052)M(0.948)DPNSTQRY		M(-13)M(13)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S3	3	629.7633056640625	2	629.76318	1257.51181	0.43441	0.00027357	-0.10629	-6.694E-05	0.32811	0.00020663	629.7630540210002	22.223	0.41682	22.224	22.042	22.459	0.00074577					16	7	4	0	0	0	0.05194	1	7786	7786		85.764	71.858	2	24111000			21400	2852	13562	13635	20565	20565		60;61			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_M(Oxidation (M))MDPNSTQRY_		M(0.998)M(0.002)DPNSTQRY		M(26)M(-26)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S3	3	629.7635498046875	2	629.76318	1257.51181	0.39594	0.00024935	-0.18221	-0.00011475	0.21374	0.0001346	629.7632559060211	23.091	0.3123	23.052	22.875	23.187	-0.03968					13	5	3	0	0	0	0.01091	1	8139	8139		143.91	118.51	2	23875000			21401	2852	13562	13635	20566	20566		60;61			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_MM(Oxidation (M))DPNSTQRY_		M(0.052)M(0.948)DPNSTQRY		M(-13)M(13)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S4	4	629.763427734375	2	629.76318	1257.51181	0.31669	0.00019944	-0.31324	-0.00019727	0.0034446	2.1693E-06	629.7629559410577	22.501	0.31161	22.273	22.091	22.403	-0.22777					13	5	3	0	0	0	0.099369	1	7832	7832		74.2	60.294	2	10289000			21402	2852	13562	13635	20567	20567		60;61			-0.10664861733448561
MMDPNSTQRY	10	Oxidation (M)	_M(Oxidation (M))MDPNSTQRY_		M(0.965)M(0.035)DPNSTQRY		M(14)M(-14)DPNSTQRY	0	0	1		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S4	4	629.7633056640625	2	629.76318	1257.51181	0.21248	0.00013381	-0.068995	-4.345E-05	0.14348	9.036E-05	629.7632910714493	23.343	0.26127	23.095	22.958	23.22	-0.24775					14	4	4	0	0	0	0.021434	1	8168	8168		117.76	98.504	2	10030000			21403	2852	13562	13635	20568	20568		60;61			-0.10664861733448561
MMDPNSTQRY	10	Unmodified	_MMDPNSTQRY_					0	0	0		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S1	1	621.7667236328125	2	621.765723	1241.51689	0.58442	0.00036337	-0.20339	-0.00012646	0.38103	0.00023691	621.7656952659038	27.04	0.4165	27.04	26.813	27.23	0					20	7	4	0	0	0	0.30623	1	9787	9787		49.933	37.692	1	45046000			21404	2852	13562	13636	20569	20569					-0.09420557870816992
MMDPNSTQRY	10	Unmodified	_MMDPNSTQRY_					0	0	0		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S2	2	621.7664794921875	2	621.765723	1241.51689	0.75435	0.00046903	-0.27702	-0.00017224	0.47733	0.00029678	621.7657864086161	27.405	0.51784	27.063	26.829	27.347	-0.34201					35	9	5	0	0	0	6.9231E-07	1	9933	9933		211.85	179.07	1	359360000			21405	2852	13562	13636	20570	20570					-0.09420557870816992
MMDPNSTQRY	10	Unmodified	_MMDPNSTQRY_					0	0	0		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S3	3	621.7658081054688	2	621.765723	1241.51689	0.47927	0.000298	-0.36275	-0.00022555	0.11652	7.245E-05	621.765729804614	27.306	0.52039	27.137	26.912	27.432	-0.16933					35	9	6	0	0	0	0.00068009	1	9809	9809		182.24	150.97	1	115450000			21406	2852	13562	13636	20571	20571					-0.09420557870816992
MMDPNSTQRY	10	Unmodified	_MMDPNSTQRY_					0	0	0		ENSG00000124571|ENST00000265351|XPO5;XPO5|p.A377Sfs*6|1|0.38|ENSG00000124571|chr6:43560271-43560272|-/C|frameshift_variant	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	HCT116MG_D190212_S4	4	621.7659301757812	2	621.765723	1241.51689	0.42806	0.00026615	-0.26877	-0.00016711	0.15928	9.9037E-05	621.7657677849381	27.447	0.56161	27.126	26.94	27.502	-0.32157					23	10	4	0	0	0	0.023406	1	9815	9815		114.2	91.465	1	18203000			21407	2852	13562	13636	20572	20572					-0.09420557870816992
MMGHRPVLVL	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))MM(Oxidation (M))GHRPVLVL_		M(0.21)M(0.79)GHRPVLVL		M(-5.7)M(5.7)GHRPVLVL	1	0	1		CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;nc|ENSG00000163468|P49368-2|CCT3;ENST00000368256.3_1_1:156302875-156308050:-|nuORF;ENST00000472765.6_1_1:156307533-156307990:-|nuORF;ENST00000533194.5_1_1:156303393-156308050:-|nuORF;ENST00000489870.1_1_1:156305554-156307990:-|nuORF	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	605.8261108398438	2	605.825386	1209.63622	0.69382	0.00042033	0.12286	7.4429E-05	0.81667	0.00049476	605.8253513079371	50.825	0.30945	50.651	50.505	50.814	-0.17408					9	5	2	0	0	0	0.35357	1	19482	19482		45.7	33.459	2	23397000			21408	365	13563	13637	20573	20573		5			0.03978680544537383
MMGHRPVLVL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MMGHRPVLVL_					1	0	0		CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;nc|ENSG00000163468|P49368-2|CCT3;ENST00000368256.3_1_1:156302875-156308050:-|nuORF;ENST00000472765.6_1_1:156307533-156307990:-|nuORF;ENST00000533194.5_1_1:156303393-156308050:-|nuORF;ENST00000489870.1_1_1:156305554-156307990:-|nuORF	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	597.8283081054688	2	597.827929	1193.6413	0.673	0.00040234	-0.21293	-0.00012729	0.46007	0.00027505	597.8279110222622	55.334	0.25394	55.146	54.968	55.222	-0.18797					13	4	5	0	0	0	0.016539	1	21328	21328		128.37	90.391	1	332910000			21409	365	13563	13638	20574	20574					0.05222984407168951
MMGHRPVLVL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MMGHRPVLVL_					1	0	0		CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;nc|ENSG00000163468|P49368-2|CCT3;ENST00000368256.3_1_1:156302875-156308050:-|nuORF;ENST00000472765.6_1_1:156307533-156307990:-|nuORF;ENST00000533194.5_1_1:156303393-156308050:-|nuORF;ENST00000489870.1_1_1:156305554-156307990:-|nuORF	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	597.8282470703125	2	597.827929	1193.6413	0.62658	0.00037459	-0.73922	-0.00044193	-0.11265	-6.7343E-05	597.8278222498442	55.454	0.15672	55.162	55.031	55.188	-0.2918					6	2	3	0	0	0	0.26262	1	21041	21041		53.833	39.927	1	6854000			21410	365	13563	13638	20575	20575					0.05222984407168951
MMGHRPVLVL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MMGHRPVLVL_					1	0	0		CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;nc|ENSG00000163468|P49368-2|CCT3;ENST00000368256.3_1_1:156302875-156308050:-|nuORF;ENST00000472765.6_1_1:156307533-156307990:-|nuORF;ENST00000533194.5_1_1:156303393-156308050:-|nuORF;ENST00000489870.1_1_1:156305554-156307990:-|nuORF	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	597.827929	1193.6413	0.63541	0.00037987	-0.62801	-0.00037544	0.0074018	4.425E-06	597.8274463358758	55.121	0.20344	55.121	54.994	55.197	0	-0.021863	-6.2488E-05	NaN	128.37	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52517000			21411	365	13563	13638							0.05222984407168951
MMKHIIVAS	9	Unmodified	_MMKHIIVAS_					0	0	0			REV__SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant	REV__SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7803344726562	2	515.282823	1028.55109	0.17861	9.2035E-05	-3.3773	-0.0017403	-3.1987	-0.0016482	515.282233808498	31.503	0.46766	31.132	30.868	31.335	-0.37026					19	8	3	0	0	0	0.32162	1	11472	11472		28.487	2.1456	1	8643500	+		21412	17514	13564	13639	20576	20576					0.03795935078755974
MMKIKKVKR	9	Unmodified	_MMKIKKVKR_					0	0	0		ENST00000515770.1_3_6:18244815-18249976:-|nuORF;ENST00000505224.5_1_6:18237677-18249946:-|nuORF	ENST00000515770.1_3_6:18244815-18249976:-|nuORF	ENST00000515770.1_3_6:18244815-18249976:-|nuORF	MSMS	HCT116MG_D190212_S3	3	581.3689575195312	2	581.369764	1160.72497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.642	1	61.403	60.903	61.903	-0.2387								0	0	0	0.7701	1	23531	23531		0.52476	0	1				21413	8449	13565	13640	20577	20577					0.15104140574885605
MMWVGCGKNA	10	Unmodified	_MMWVGCGKNA_					0	0	0			REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	MSMS	HCT116MG_D190212_S3	3	548.740478515625	2	548.740465	1095.46638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.235	1	13.304	12.804	13.804	0.069158								0	0	0	0.97116	1	4185	4185		0	0	1		+		21414	12528	13566	13641	20578	20578					-0.07753758729472793
MNDCDTGYDE	10	Unmodified	_MNDCDTGYDE_					0	0	0			REV__ENST00000493688.5_1_20:56826891-56884481:-|nuORF	REV__ENST00000493688.5_1_20:56826891-56884481:-|nuORF	MSMS	HCT116MG_D190212_S2	2	388.127685546875	3	388.126961	1161.35905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5027	1	2.4784	1.9784	2.9784	-0.024288								0	0	0	0.97054	1	804	804		0.13989	0.056541	1		+		21415	14567	13567	13642	20579	20579					-0.2151710192072187
MNYHHIREM	9	Unmodified	_MNYHHIREM_					0	0	0			REV__ENST00000493756.1_1_1:40997452-41013129:+|nuORF	REV__ENST00000493756.1_1_1:40997452-41013129:+|nuORF	MSMS	HCT116MG_D190212_S1	1	410.8561706542969	3	410.85507	1229.54338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.158	1	14.158	13.658	14.658	0								0	0	0	0.77012	1	4619	4619		0.20686	0.066965	1		+		21416	11604	13568	13643	20580	20580					-0.0622082418883565
MPAAAALI	8	Unmodified	_MPAAAALI_					0	0	0		ENSG00000232125|ENST00000452335|DYTN	ENSG00000232125|ENST00000452335|DYTN	ENSG00000232125|ENST00000452335|DYTN	MSMS	HCT116MG_D190212_S1	1	379.2167053222656	2	379.217475	756.420396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.902	1	58.902	58.402	59.402	0								0	0	0	0.8837	1	22702	22702		2.8892	0	1				21417	6509	13569	13644	20581	20581					0.03244287422205616
MPACFYTVSRK	11	Unmodified	_MPACFYTVSRK_					0	0	0		ENSG00000035720|ENST00000265404|STAP1	ENSG00000035720|ENST00000265404|STAP1	ENSG00000035720|ENST00000265404|STAP1	MSMS	HCT116MG_D190212_S3	3	435.2354431152344	3	434.882626	1301.62605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.56	1	63.346	62.846	63.846	-0.21454								0	0	0	0.95954	1	24248	24248		0.45452	0.21867	1				21418	984	13570	13645	20582	20582					-0.012699271806923207
MPCCSCCSK	9	Unmodified	_MPCCSCCSK_					0	0	0			REV__nc|ENSG00000260549|Q93083|MT1L	REV__nc|ENSG00000260549|Q93083|MT1L	MSMS	HCT116MG_D190212_S3	3	481.15673828125	2	481.157062	960.299571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0999	1	4.1286	3.6286	4.6286	0.028732								0	0	0	0.7701	1	1231	1231		0.52476	0.52476	1		+		21419	14225	13571	13646	20583	20583					-0.1821669094108529
MPCNDNDD	8	Unmodified	_MPCNDNDD_					0	0	0			REV__PCDHB1|p.R559C|1|0.44|ENSG00000171815|chr5:141053145-141053145|C/T|missense_variant	REV__PCDHB1|p.R559C|1|0.44|ENSG00000171815|chr5:141053145-141053145|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	462.1467590332031	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.054	1	45.741	45.241	46.241	-0.31237								0	0	0	0.8837	1	17261	17261		0.79363	0.79363	1		+		21420	17390	13572	13647	20584	20584					-0.18456704084201192
MPCTGQNAATP	11	Unmodified	_MPCTGQNAATP_					0	0	0		ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3|CECR2	ENSG00000099954|ENST00000262608|CECR2	ENSG00000099954|ENST00000262608|CECR2	MSMS	HCT116MG_D190212_S2	2	364.51690673828125	3	364.160048	1089.45831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.508	1	21.123	20.623	21.623	-0.38427								0	0	0	0.95113	1	7573	7573		2.6312	0	1				21421	1649	13573	13648	20585	20585					-0.0828361444530401
MPFEHSVQWQP	11	Unmodified	_MPFEHSVQWQP_					0	0	0			REV__ENST00000523588.1_1_8:87563280-87563554:+|nuORF	REV__ENST00000523588.1_1_8:87563280-87563554:+|nuORF	MSMS	HCT116MG_D190212_S1	1	693.3186645507812	2	693.31898	1384.62341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.525	1	33.525	33.025	34.025	0								0	0	0	0.95113	1	12410	12410		5.7319	0	1		+		21422	10924	13574	13649	20586	20586					-0.05352059313963764
MPFQISFRLLR	11	Unmodified	_MPFQISFRLLR_					0	0	0		ENST00000537025.6_1_17:66040560-66041903:+|nuORF	ENST00000537025.6_1_17:66040560-66041903:+|nuORF	ENST00000537025.6_1_17:66040560-66041903:+|nuORF	MSMS	HCT116MG_D190212_S1	1	704.39794921875	2	704.400107	1406.78566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.42	1	58.42	57.92	58.92	0								0	0	0	0.95731	1	22504	22504		2.4985	1.169	1				21423	8670	13575	13650	20587	20587					0.09853949158809883
MPHMDPQAP	9	Unmodified	_MPHMDPQAP_					0	0	0			REV__ENST00000405489.7_2_2:27435435-27436103:+|nuORF	REV__ENST00000405489.7_2_2:27435435-27436103:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2233276367188	2	512.222962	1022.43137	0.15414	7.8954E-05	0.46828	0.00023987	0.62242	0.00031882	512.223324561262	21.699	0.41582	21.314	21.115	21.531	-0.38503					12	7	2	0	0	0	0.55223	1	7652	7652		13.906	0.39817	1	10106000	+		21424	15407	13576	13651	20588	20588					-0.0789467826582495
MPKAMSIQ	8	Unmodified	_MPKAMSIQ_					0	0	0			REV__CILP|p.R882M|1|0.24|ENSG00000138615|chr15:65197641-65197641|C/A|missense_variant	REV__CILP|p.R882M|1|0.24|ENSG00000138615|chr15:65197641-65197641|C/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	452.73162841796875	2	453.232799	904.451044	0.08718	3.9513E-05	0.91301	0.0004138	1.0002	0.00045332	453.23329254878104	28.99	0.25665	28.674	28.504	28.761	-0.31613					7	4	2	0	0	0	0.28869	1	10605	10605		12.532	0	1	24030000	+		21425	10193	13577	13652	20589	20589					-0.005003022550567948
MPKKPKNENPV	11	Unmodified	_MPKKPKNENPV_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MSMS	HCT116MG_D190212_S2	2	641.3511962890625	2	641.352822	1280.69109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.402	1	32.172	31.672	32.672	-0.23009								0	0	0	0.9465	1	11988	11988		8.1555	1.4324	1				21426	3031	13578	13653	20590	20590					0.06197390616807752
MPLLLLLPLL	10	Unmodified	_MPLLLLLPLL_					0	0	0		ENST00000602065.5_1_19:51714364-51714690:+|nuORF;nc|ENSG00000105383|P20138-3|CD33;nc|ENSG00000105383|P20138-2|CD33;ENSG00000105383|ENST00000262262|CD33	REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	568.3794555664062	2	568.379789	1134.74502	0.25469	0.00014476	-0.50657	-0.00028792	-0.25188	-0.00014316	568.3792882422047	58.236	0.17682	58.236	58.135	58.312	0					5	3	2	0	0	0	0.88673	1	22452	22452		1.8442	0	1	78745000	+		21427	11907	13579	13654	20591	20591					0.18304214786485318
MPPCAAPSPL	10	Unmodified	_MPPCAAPSPL_					0	0	0		ENST00000318443.9_1_15:73976775-73994724:+|nuORF	ENST00000318443.9_1_15:73976775-73994724:+|nuORF	ENST00000318443.9_1_15:73976775-73994724:+|nuORF	MSMS	HCT116MG_D190212_S3	3	491.7491149902344	2	492.238081	982.461609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.825	1	42.52	42.02	43.02	-0.30472								0	0	0	0.92272	1	15965	15965		10.824	0.64053	1				21428	7090	13580	13655	20592	20592					-0.03032319600640676
MPQIFGEQVS	10	Unmodified	_MPQIFGEQVS_					0	0	0		nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	MSMS	HCT116MG_D190212_S3	3	379.1863098144531	3	379.186592	1134.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.64	1	40.339	39.839	40.839	-0.30161								0	0	0	0.95507	1	15094	15094		1.7423	0	1				21429	4111	13581	13656	20593	20593					-0.02394224499653319
MPQIFGEQVS	10	Unmodified	_MPQIFGEQVS_					0	0	0		nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	MSMS	HCT116MG_D190212_S4	4	379.1863708496094	3	379.186592	1134.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.716	1	40.338	39.838	40.838	-0.37828								0	0	0	0.95507	1	14948	14948		1.7423	0	1				21430	4111	13581	13656	20594	20594					-0.02394224499653319
MPQSTGPK	8	Unmodified	_MPQSTGPK_					0	0	0			REV__CDHR5|p.G554Rfs*161|1|0.26|ENSG00000099834|chr11:618899-618900|-/G|frameshift_variant	REV__CDHR5|p.G554Rfs*161|1|0.26|ENSG00000099834|chr11:618899-618900|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	423.28558349609375	2	423.212921	844.411288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.103	1	34.806	34.306	35.306	-0.29707								0	0	0	0.8837	1	12945	12945		5.2307	0.47466	1		+		21431	10139	13582	13657	20595	20595					-0.017141059341156506
MPSFLSVLET	10	Unmodified	_MPSFLSVLET_					0	0	0		ENST00000258412.7_1_2:219140006-219140096:-|nuORF	ENST00000258412.7_1_2:219140006-219140096:-|nuORF	ENST00000258412.7_1_2:219140006-219140096:-|nuORF	MSMS	HCT116MG_D190212_S3	3	562.2911987304688	2	562.288825	1122.5631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.533	1	39.231	38.731	39.731	-0.30137								0	0	0	0.92607	1	14677	14677		10.074	1.3285	1				21432	6831	13583	13658	20596	20596					0.006718303029174422
MQEISLVW	8	Unmodified	_MQEISLVW_					0	0	0		ENST00000361040.9_1_1:155823336-155823375:-|nuORF	ENST00000361040.9_1_1:155823336-155823375:-|nuORF	ENST00000361040.9_1_1:155823336-155823375:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1005.5074462890625	1	1005.50738	1004.5001	0.65001	0.00065359	-0.34468	-0.00034658	0.30533	0.00030701	1005.5070102298863	57.464	0.20807	57.289	57.159	57.367	-0.17494					5	3	2	0	0	0	0.69862	1	22219	22219		23.148	2.2772	1	22732000			21433	7356	13584	13659	20597	20597					-0.001966906944517177
MQEISLVW	8	Unmodified	_MQEISLVW_					0	0	0		ENST00000361040.9_1_1:155823336-155823375:-|nuORF	ENST00000361040.9_1_1:155823336-155823375:-|nuORF	ENST00000361040.9_1_1:155823336-155823375:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1005.50738	1004.5001	0.73865	0.00074272	0.37059	0.00037263	1.1092	0.0011154	1005.5078318940654	57.23	0.20772	57.23	57.152	57.36	0	-0.029604	0.0001266	NaN	23.148	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12171000			21434	7356	13584	13659							-0.001966906944517177
MQFAAAAY	8	Unmodified	_MQFAAAAY_					0	0	0		DAGLB|p.L359*|1|0.33|ENSG00000164535|chr7:6424816-6424816|A/-|frameshift_variant;nc|ENSG00000164535|Q8NCG7-2|DAGLB;DAGLB|p.E562Gfs*56|1|0.32|ENSG00000164535|chr7:6410265-6410266|-/C|frameshift_variant;ENSG00000164535|ENST00000297056|DAGLB	DAGLB|p.L359*|1|0.33|ENSG00000164535|chr7:6424816-6424816|A/-|frameshift_variant	DAGLB|p.L359*|1|0.33|ENSG00000164535|chr7:6424816-6424816|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	872.39794921875	1	872.397101	871.389824	0.84016	0.00073295	0.22413	0.00019553	1.0643	0.00092848	872.3970261093685	46.138	0.36055	46.037	45.863	46.223	-0.1014					13	6	3	0	0	0	0.55314	1	17572	17572		36.466	19.38	1	40149000			21435	639	13585	13660	20598	20598					-0.0510149096285204
MQFQLTLFL	9	Unmodified	_MQFQLTLFL_					0	0	0		nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF;nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-2|LAMB4	nc|ENSG00000091128|A4D0S4-2|LAMB4	MSMS	HCT116MG_D190212_S1	1	570.8111572265625	2	570.809728	1139.6049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.334	1	37.334	36.834	37.834	0								0	0	0	0.67173	1	13945	13945		20.454	6.5476	1				21436	1552	13586	13661	20599	20599					0.0406843078210386
MQHAGFQVRAA	11	Unmodified	_MQHAGFQVRAA_					0	0	0		sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1;sp|P16755|UL13_HCMVAUncharacterizedproteinUL13OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL13PE=1SV=1	sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1	sp|Q6SWB8|UL13_HCMVMUncharacterizedproteinUL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL13PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	405.8739013671875	3	405.87323	1214.59786	0.13116	5.3234E-05	1.7904	0.00072666	1.9215	0.0007799	405.8739513551193	17.663	0.20835	17.663	17.568	17.776	0					5	3	2	0	0	0	0.74111	1	6053	6053		6.6235	2.434	1	2043800			21437	18211	13587	13662	20600	20600					-0.0008548904572762694
MQLLFINSGL	10	Unmodified	_MQLLFINSGL_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-MSMS	HCT116MG_D190212_S2	2	568.3134155273438	2	568.312635	1134.61072	0.61699	0.00035064	0.58369	0.00033172	1.2007	0.00068236	568.3127647859689	34.702	0.36119	34.543	34.296	34.657	-0.15834					11	6	3	0	0	0	0.57664	1	12925	12925		29.841	5.82	1	59497000	+		21438	14094	13588	13663	20601	20601					0.04879529293793894
MQMISFAK	8	Unmodified	_MQMISFAK_					0	0	0		ENSG00000168131|ENST00000303324|OR2B2	ENSG00000168131|ENST00000303324|OR2B2	ENSG00000168131|ENST00000303324|OR2B2	MULTI-MSMS	HCT116MG_D190212_S1	1	478.24041748046875	2	478.240624	954.466695	0.16028	7.6651E-05	0.23522	0.00011249	0.3955	0.00018914	478.2405515910885	33.841	0.2612	33.841	33.711	33.972	0					6	4	2	0	0	0	0.6854	1	12554	12554		24.674	6.5389	1	6711800			21439	4985	13589	13664	20602	20602					-0.012360157380044257
MQMISFAK	8	Unmodified	_MQMISFAK_					0	0	0		ENSG00000168131|ENST00000303324|OR2B2	ENSG00000168131|ENST00000303324|OR2B2	ENSG00000168131|ENST00000303324|OR2B2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	478.240624	954.466695	0.14913	7.1318E-05	1.0364	0.00049565	1.1855	0.00056697	478.24071502509327	34.066	0.31138	33.89	33.76	34.072	-0.17512	0.024668	0.00062746	NaN	24.674	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7652300			21440	4985	13589	13664							-0.012360157380044257
MQSFMMPFYL	10	Unmodified	_MQSFMMPFYL_					0	0	0		ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF;WBP2|p.M185*|1|0.26|ENSG00000132471|chr17:75847590-75847590|G/-|frameshift_variant;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000589834.1_1_17:73845679-73851408:-|nuORF	ENST00000589834.1_1_17:73845679-73851408:-|nuORF	MSMS	HCT116MG_D190212_S1	1	647.7877197265625	2	647.787081	1293.55961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.689	1	12.689	12.189	13.189	0								0	0	0	0.97116	1	4086	4086		0	0	1				21441	3187	13590	13665	20603	20603					-0.07542879066909336
MREWFSETFQK	11	Oxidation (M)	_M(Oxidation (M))REWFSETFQK_		M(1)REWFSETFQK		M(61)REWFSETFQK	0	0	1		ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	MSMS	HCT116MG_D190212_S3	3	752.84814453125	2	752.848101	1503.68165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.751	1	42.448	41.948	42.948	-0.30392								0	0	0	0.28955	1	15935	15935		60.943	48.703	1				21442	3064	13591	13666	20604	20604		69			-0.0500442245938757
MREWFSETFQK	11	Oxidation (M)	_M(Oxidation (M))REWFSETFQK_		M(1)REWFSETFQK		M(110)REWFSETFQK	0	0	1		ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	MSMS	HCT116MG_D190212_S4	4	752.8480834960938	2	752.848101	1503.68165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.77	1	42.396	41.896	42.896	-0.37493								0	0	0	0.00053662	1	15732	15732		106.29	83.631	1				21443	3064	13591	13666	20605	20605		69			-0.0500442245938757
MRFGNEREL	9	Unmodified	_MRFGNEREL_					0	0	0		ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	MSMS	HCT116MG_D190212_S1	1	384.2229919433594	3	384.525719	1150.55533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.589	1	32.589	32.089	33.089	0								0	0	0	0.38693	1	12031	12031		34.222	18.483	1				21444	2739	13592	13667	20606	20606					-0.013928841739470954
MRGRIYLEPP	10	Unmodified	_MRGRIYLEPP_					0	0	0		ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	MSMS	HCT116MG_D190212_S1	1	411.22625732421875	3	411.225381	1230.65431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.519	1	25.519	25.019	26.019	0								0	0	0	0.94345	1	9183	9183		6.1918	1.4759	1				21445	3814	13593	13668	20607	20607					0.04821138790907753
MRKLKRLRRHL	11	Unmodified	_MRKLKRLRRHL_					0	0	0		ENO4|p.Y584Tfs*31|2|0.33|ENSG00000188316|chr10:116881534-116881534|T/-|frameshift_variant	ENO4|p.Y584Tfs*31|2|0.33|ENSG00000188316|chr10:116881534-116881534|T/-|frameshift_variant	ENO4|p.Y584Tfs*31|2|0.33|ENSG00000188316|chr10:116881534-116881534|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	753.98681640625	2	753.985538	1505.95652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.836	1	20.836	20.336	21.336	0								0	0	0	0.96208	1	7303	7303		0	0	1				21446	781	13594	13669	20608	20608					0.22378324320789034
MRKWIKKIVIR	11	Unmodified	_MRKWIKKIVIR_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MSMS	HCT116MG_D190212_S1	1	490.9871826171875	3	490.986636	1469.93808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.627	1	61.627	61.127	62.127	0								0	0	0	0.96192	1	23782	23782		0.08335	0	1		+		21447	11141	13595	13670	20609	20609					0.2219076962624058
MRKWIKKIVIR	11	Unmodified	_MRKWIKKIVIR_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MSMS	HCT116MG_D190212_S1	1	490.9869384765625	3	490.986636	1469.93808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.319	1	62.319	61.819	62.819	0								0	0	0	0.96192	1	24062	24062		0.08335	0	1		+		21448	11141	13595	13670	20610	20610					0.2219076962624058
MRLFPQIPS	9	Unmodified	_MRLFPQIPS_					0	0	0		ENST00000480291.1_7:100610438-100610486:+|nuORF	ENST00000480291.1_7:100610438-100610486:+|nuORF	ENST00000480291.1_7:100610438-100610486:+|nuORF	MSMS	HCT116MG_D190212_S2	2	363.5344543457031	3	363.535555	1087.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.965	1	34.807	34.307	35.307	-0.15834								0	0	0	0.76718	1	13026	13026		7.1017	0.89594	1				21449	8241	13596	13671	20611	20611					0.04454679842137921
MRLLDPFY	8	Unmodified	_MRLLDPFY_					0	0	0			REV__PADI6|p.A610V|1|0.39|ENSG00000276747|chr1:17398825-17398825|C/T|missense_variant	REV__PADI6|p.A610V|1|0.39|ENSG00000276747|chr1:17398825-17398825|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	352.18414306640625	3	352.184522	1053.53174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.576	1	27.576	27.076	28.076	0								0	0	0	0.8837	1	10012	10012		1.8442	0	1		+		21450	14460	13597	13672	20612	20612					0.007113020594943009
MRNKRHYEKEL	11	Unmodified	_MRNKRHYEKEL_					0	0	0			REV__FAM161A|p.P186H|1|0.17|ENSG00000170264|chr2:61840447-61840447|G/T|missense_variant	REV__FAM161A|p.P186H|1|0.17|ENSG00000170264|chr2:61840447-61840447|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	752.394287109375	2	752.396084	1502.77762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.914	1	54.596	54.096	55.096	-0.31774								0	0	0	0.95686	1	20546	20546		2.7352	0.23671	1		+		21451	16805	13598	13673	20613	20613					0.046337701714037394
MRNPWFPEFWQ	11	Unmodified	_MRNPWFPEFWQ_					0	0	0		GRM1|p.T363M|1|0.32|ENSG00000152822|chr6:146304748-146304748|C/T|missense_variant	GRM1|p.T363M|1|0.32|ENSG00000152822|chr6:146304748-146304748|C/T|missense_variant	GRM1|p.T363M|1|0.32|ENSG00000152822|chr6:146304748-146304748|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	769.3592529296875	2	769.355896	1536.69724	0.70241	0.0005404	2.2078	0.0016986	2.9103	0.002239	769.3580397867026	19.209	0.20807	19.209	19.079	19.287	0					5	3	2	0	0	0	0.36541	1	6664	6664		4.5289	0.93237	1	3576200			21452	9200	13599	13674	20614	20614					-0.04964091151668981
MRRIRFRKKFV	11	Unmodified	_MRRIRFRKKFV_					0	0	0			REV__ENST00000493793.1_1_1:51887572-51887638:-|nuORF	REV__ENST00000493793.1_1_1:51887572-51887638:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	512.9856567382812	3	512.985518	1535.93473	0.33454	0.00017162	-0.02323	-1.1917E-05	0.31131	0.0001597	512.9854420136556	55.092	1.8236	54.775	53.573	55.396	-0.31774					104	34	5	0	0	0	0.74191	1	20670	20670		0	0	1	87386000	+		21453	16066	13600	13675	20615	20615					0.18819519572184618
MRRMRILRRLL	11	Unmodified	_MRRMRILRRLL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	HCT116MG_D190212_S2	2	757.4742431640625	2	757.473949	1512.93334	1.0516	0.00079659	0.11543	8.7438E-05	1.1671	0.00088402	757.4736933633477	59.501	0.253	59.341	59.285	59.538	-0.16012					10	5	2	0	0	0	0.74191	1	23073	23073		0	0	1	14152000			21454	2153	13601	13676	20616	20616					0.19739562211839257
MRRRQPRTRLN	11	Unmodified	_MRRRQPRTRLN_					0	0	0			REV__PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	REV__PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	742.4288330078125	2	742.428584	1482.84262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.821	1	22.435	21.935	22.935	-0.3852								0	0	0	0.95686	1	8104	8104		2.7352	1.5419	1		+		21455	17438	13602	13677	20617	20617					0.12050809487914194
MRSRLRRRRRR	11	Unmodified	_MRSRLRRRRRR_					0	0	0			REV__ENST00000545654.5_1_11:95522396-95522864:-|nuORF	REV__ENST00000545654.5_1_11:95522396-95522864:-|nuORF	MSMS	HCT116MG_D190212_S1	1	799.99267578125	2	799.995291	1597.97603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.912	1	15.912	15.412	16.412	0								0	0	0	0.96149	1	5320	5320		0.30703	0.30703	1		+		21456	16395	13603	13678	20618	20618					0.2009609338424525
MRSRLRRRRRR	11	Unmodified	_MRSRLRRRRRR_					0	0	0			REV__ENST00000545654.5_1_11:95522396-95522864:-|nuORF	REV__ENST00000545654.5_1_11:95522396-95522864:-|nuORF	MSMS	HCT116MG_D190212_S1	1	799.9933471679688	2	799.995291	1597.97603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.196	1	36.196	35.696	36.696	0								0	0	0	0.96157	1	13488	13488		0.26902	0.26902	1		+		21457	16395	13603	13678	20619	20619					0.2009609338424525
MRVCEDSEEPM	11	Unmodified	_MRVCEDSEEPM_					0	0	0			REV__nc|ENSG00000173889|Q8NDX5-2|PHC3	REV__nc|ENSG00000173889|Q8NDX5-2|PHC3	MSMS	HCT116MG_D190212_S4	4	663.2632446289062	2	663.262155	1324.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.778	1	36.393	35.893	36.893	-0.38486								0	0	0	0.92235	1	13472	13472		17.113	0.96379	1		+		21458	13460	13604	13679	20620	20620					-0.1395165853355138
MRVYSWNHIIL	11	Unmodified	_MRVYSWNHIIL_					0	0	0		GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1	GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	716.8836059570312	2	716.381914	1430.74928	0.31609	0.00022644	0.02145	1.5366E-05	0.33754	0.00024181	716.3820048181672	36.083	0.31203	35.782	35.626	35.938	-0.30042					8	5	2	0	0	0	0.74191	1	13338	13338		3.2813	0	1	9918200			21459	5436	13605	13680	20621	20621					0.05113072262111018
MRVYSWNHIIL	11	Unmodified	_MRVYSWNHIIL_					0	0	0		GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1	GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	716.381914	1430.74928	1.4255	0.0010212	-1.0374	-0.00074316	0.3881	0.00027803	716.3814701366547	35.966	0.20618	35.838	35.658	35.864	-0.12799	0.035605	-0.0012249	NaN	3.2813	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12060000			21460	5436	13605	13680							0.05113072262111018
MRVYSWNHIIL	11	Unmodified	_MRVYSWNHIIL_					0	0	0		GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1	GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	716.381914	1430.74928	0.96363	0.00069033	-0.38969	-0.00027917	0.57394	0.00041116	716.381788765335	36.172	0.24492	35.786	35.673	35.918	-0.38558	-0.01581	-0.00029691	NaN	3.2813	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2195100			21461	5436	13605	13680							0.05113072262111018
MRWCRQKNV	9	Unmodified	_MRWCRQKNV_					0	0	0			REV__ENST00000432228.1_1_2:222826463-222827672:+|nuORF	REV__ENST00000432228.1_1_2:222826463-222827672:+|nuORF	MSMS	HCT116MG_D190212_S1	1	610.8082275390625	2	610.810602	1219.60665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.657	1	10.657	10.157	11.157	0								0	0	0	0.7701	1	3285	3285		0.52476	0.066424	1		+		21462	15588	13606	13681	20622	20622					0.005631613190871576
MRYEIKEIT	9	Unmodified	_MRYEIKEIT_					0	0	0		tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	tr|U7SYX6|U7SYX6_FUSNUIron(III)transportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00944PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	394.8775939941406	3	394.877758	1181.61144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3315	1	5.3315	4.8315	5.8315	0								0	0	0	0.77018	1	1606	1606		0.26902	0	1				21463	18521	13607	13682	20623	20623					0.027903239428269444
MRYVALNHS	9	Unmodified	_MRYVALNHS_					0	0	0			REV__ZFP91|p.H390Y|1|0.09|ENSG00000186660|chr11:58616781-58616781|C/T|missense_variant	REV__ZFP91|p.H390Y|1|0.09|ENSG00000186660|chr11:58616781-58616781|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	364.1575012207031	3	364.186926	1089.53895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.383	1	22.998	22.498	23.498	-0.3852								0	0	0	0.67173	1	8331	8331		14.405	5.9611	1		+		21464	18069	13608	13683	20624	20624					-0.0022396534009203606
MRYVASYL	8	Unmodified	_MRYVASYL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	501.7573547363281	2	501.757495	1001.50044	0.42903	0.00021527	0.46883	0.00023524	0.89786	0.00045051	501.7572796229997	45.529	0.36456	45.529	45.295	45.66	0					10	6	2	0	0	0	0.28659	1	17261	17261		60.39	30.165	1	19256000			21465	5463	13609	13684	20625	20625					-0.00025270974606428354
MRYVASYL	8	Unmodified	_MRYVASYL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	501.757568359375	2	501.757495	1001.50044	0.38181	0.00019158	-0.095069	-4.7702E-05	0.28674	0.00014387	501.7572693165382	45.529	0.25779	45.436	45.256	45.514	-0.092472					9	4	3	0	0	0	0.17804	1	17330	17330		77.984	33.577	1	34791000			21466	5463	13609	13684	20626	20626					-0.00025270974606428354
MRYVASYLL	9	Unmodified	_MRYVASYLL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	558.2991943359375	2	558.299527	1114.5845	0.53733	0.00029999	-0.20928	-0.00011684	0.32805	0.00018315	558.2991263420934	53.252	0.20581	53.252	53.153	53.359	0					6	3	2	0	0	0	0.069315	1	20403	20403		65.235	38.351	1	20642000			21467	5463	13610	13685	20627	20627					0.031792601223060046
MRYVASYLL	9	Unmodified	_MRYVASYLL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2999877929688	2	558.299527	1114.5845	0.23953	0.00013373	0.0080174	4.4761E-06	0.24755	0.0001382	558.2994891735442	53.541	0.3604	53.351	53.172	53.532	-0.1894					21	6	5	0	0	0	0.027442	1	20588	20588		88.954	44.547	1	222270000			21468	5463	13610	13685	20628	20628					0.031792601223060046
MRYVASYLL	9	Unmodified	_MRYVASYLL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1115.593505859375	1	1115.59178	1114.5845	0.40813	0.00045531	0.71991	0.00080312	1.128	0.0012584	1115.5926171110084	53.541	0.20559	53.351	53.223	53.429	-0.1894					6	3	2	0	0	0	0.016701	1	20619	20619		99.799	65.612	1	13422000			21469	5463	13610	13685	20629	20629					0.031792601223060046
MSALDQITQV	10	Unmodified	_MSALDQITQV_					0	0	0		DNAH2|p.I2363Yfs*40|1|0.31|ENSG00000183914|chr17:7792278-7792278|C/-|frameshift_variant;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.Q4263Sfs*13|1|0.12|ENSG00000183914|chr17:7832639-7832639|C/-|frameshift_variant;DNAH2|p.K4326Rfs*84|3|0.27|ENSG00000183914|chr17:7832920-7832920|C/-|frameshift_variant;ENSG00000183914|ENST00000572933|DNAH2	DNAH2|p.I2363Yfs*40|1|0.31|ENSG00000183914|chr17:7792278-7792278|C/-|frameshift_variant	DNAH2|p.I2363Yfs*40|1|0.31|ENSG00000183914|chr17:7792278-7792278|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1106.5560302734375	1	1105.55579	1104.54851	0.68895	0.00076168	0.71705	0.00079273	1.406	0.0015544	1105.5581970151766	58.005	0.46935	57.831	57.471	57.941	-0.17311					15	8	3	0	0	0	0.67188	1	22345	22345		22.736	3.2973	1	30061000			21470	704	13611	13686	20630	20630					0.00041758154770832334
MSDSYLPSYY	10	Oxidation (M)	_M(Oxidation (M))SDSYLPSYY_		M(1)SDSYLPSYY		M(75)SDSYLPSYY	0	0	1		YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant;YTHDF2|p.N136Kfs*2|1|0.37|ENSG00000198492|chr1:28742670-28742671|-/G|frameshift_variant;YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant	YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	621.255859375	2	621.255179	1240.49581	0.408	0.00025347	0.018822	1.1694E-05	0.42682	0.00026516	621.2552857879568	47.09	0.26065	46.776	46.646	46.907	-0.31405					7	4	2	0	0	0	0.095673	1	17688	17688		74.929	47.3	1	5669900			21471	6233	13612	13687	20631	20631		133			-0.11482244698686372
MSDSYLPSYY	10	Oxidation (M)	_M(Oxidation (M))SDSYLPSYY_		M(1)SDSYLPSYY		M(78)SDSYLPSYY	0	0	1		YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant;YTHDF2|p.N136Kfs*2|1|0.37|ENSG00000198492|chr1:28742670-28742671|-/G|frameshift_variant;YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant	YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	621.7572631835938	2	621.255179	1240.49581	0.55221	0.00034306	-0.44149	-0.00027428	0.11072	6.8786E-05	621.2547412368724	47.157	0.36078	46.787	46.537	46.898	-0.37038					10	6	2	0	0	0	0.079351	1	17436	17436		78.149	50.521	1	5687500			21472	6233	13612	13687	20632	20632		133			-0.11482244698686372
MSDSYLPSYY	10	Unmodified	_MSDSYLPSYY_					0	0	0		YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant;YTHDF2|p.N136Kfs*2|1|0.37|ENSG00000198492|chr1:28742670-28742671|-/G|frameshift_variant;YTHDF2|p.P268Rfs*2|1|0.14|ENSG00000198492|chr1:28743069-28743069|C/-|frameshift_variant;YTHDF2|p.F459Sfs*15|1|0.27|ENSG00000198492|chr1:28743643-28743643|T/-|frameshift_variant;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant	YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	613.2569580078125	2	613.257722	1224.50089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.803	1	49.441	48.941	49.941	-0.36213								0	0	0	0.87399	1	18485	18485		19.257	7.7623	1				21473	6233	13612	13688	20633	20633					-0.10237940836054804
MSEDKPQDY	9	Oxidation (M)	_M(Oxidation (M))SEDKPQDY_		M(1)SEDKPQDY		M(110)SEDKPQDY	0	0	1		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S1	1	564.7295532226562	2	564.729329	1127.4441	0.39813	0.00022483	-0.035984	-2.0321E-05	0.36214	0.00020451	564.7292758678116	20.096	0.20912	20.096	19.966	20.175	0					9	3	3	0	0	0	0.0096585	1	7015	7015		114.19	62.557	1	8507000			21474	4976	13613	13689	20634	20634		107			-0.1145198839258228
MSEDKPQDY	9	Oxidation (M)	_M(Oxidation (M))SEDKPQDY_		M(1)SEDKPQDY		M(200)SEDKPQDY	0	0	1		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S2	2	564.7294311523438	2	564.729329	1127.4441	0.4347	0.00024549	0.051794	2.9249E-05	0.4865	0.00027474	564.7292926446731	20.589	0.31954	20.21	19.969	20.289	-0.37949					12	5	3	0	0	0	7.5242E-05	2	7206	7206;7228		203.64	103.84	1	21710000			21475	4976	13613	13689	20635;20636	20635		107			-0.1145198839258228
MSEDKPQDY	9	Oxidation (M)	_M(Oxidation (M))SEDKPQDY_		M(1)SEDKPQDY		M(97)SEDKPQDY	0	0	1		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S3	3	564.7293090820312	2	564.729329	1127.4441	0.36829	0.00020799	0.0027878	1.5744E-06	0.37108	0.00020956	564.7291871470358	19.925	0.2606	19.973	19.791	20.051	0.048107					8	4	2	0	0	0	0.019537	1	6871	6871		96.936	56.986	1	5231600			21476	4976	13613	13689	20637	20637		107			-0.1145198839258228
MSEDKPQDY	9	Unmodified	_MSEDKPQDY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S1	1	556.7317504882812	2	556.731871	1111.44919	0.42221	0.00023506	0.18281	0.00010178	0.60503	0.00033684	556.7318520377935	22.875	0.36437	22.875	22.637	23.001	0					14	6	3	0	0	0	7.2446E-08	1	8105	8105		218.2	125.55	1	36320000			21477	4976	13613	13690	20638	20638					-0.10207684529973449
MSEDKPQDY	9	Unmodified	_MSEDKPQDY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S2	2	556.7325439453125	2	556.731871	1111.44919	0.28993	0.00016141	0.26228	0.00014602	0.55221	0.00030743	556.7319626759554	23.344	0.57123	22.959	22.622	23.193	-0.3852					25	10	4	0	0	0	2.9811E-09	1	8300	8300		234.93	131.57	1	125110000			21478	4976	13613	13690	20639	20639					-0.10207684529973449
MSEDKPQDY	9	Unmodified	_MSEDKPQDY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S3	3	556.7322998046875	2	556.731871	1111.44919	0.31029	0.00017275	0.11805	6.5724E-05	0.42834	0.00023847	556.7319148786527	22.941	0.45643	22.922	22.699	23.156	-0.018869					17	8	3	0	0	0	0.0034966	1	8077	8077		166.77	97.664	1	26074000			21479	4976	13613	13690	20640	20640					-0.10207684529973449
MSEDKPQDY	9	Unmodified	_MSEDKPQDY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S4	4	556.7325439453125	2	556.731871	1111.44919	0.1427	7.9445E-05	1.4501	0.00080729	1.5928	0.00088674	556.7322913768847	23.232	0.31593	22.985	22.748	23.063	-0.24775					7	5	2	0	0	0	0.27446	2	8131	8099;8131		33.445	9.4243	1	3040100			21480	4976	13613	13690	20641;20642	20642					-0.10207684529973449
MSEDSNLHY	9	Unmodified	_MSEDSNLHY_					0	0	0		ENST00000529012.1_1_11:111795026-111796920:+|nuORF;ENSG00000149300|ENST00000278601|C11orf52;ENST00000527286.5_1_11:111789765-111796920:+|nuORF	ENST00000529012.1_1_11:111795026-111796920:+|nuORF	ENST00000529012.1_1_11:111795026-111796920:+|nuORF	MSMS	HCT116MG_D190212_S2	2	548.2232055664062	2	548.224214	1094.43387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.177	1	29.892	29.392	30.392	-0.28453								0	0	0	0.52331	1	11084	11084		27.629	5.8822	1				21481	4054	13614	13691	20643	20643					-0.109565513271491
MSEEDEQGWC	10	Unmodified	_MSEEDEQGWC_					0	0	0		ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	MSMS	HCT116MG_D190212_S2	2	607.3094482421875	2	607.210446	1212.40634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.556	1	57.381	56.881	57.881	-0.17494								0	0	0	0.96453	1	22226	22226		1.4819	0	1				21482	4809	13615	13692	20644	20644					-0.19136822649693386
MSEEHTAVY	9	Unmodified	_MSEEHTAVY_					0	0	0		ENST00000464528.5_1_17:1630890-1639119:+|nuORF;WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENST00000464528.5_1_17:1630890-1639119:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7283325195312	2	533.729132	1065.44371	0.45857	0.00024475	-0.72386	-0.00038635	-0.26529	-0.00014159	533.7288415731568	26.283	0.31292	26.283	26.084	26.397	0					8	5	2	0	0	0	0.050578	1	9503	9503		74.423	44.198	1	5782100			21483	4950	13616	13693	20645	20645					-0.08639363321776727
MSEEHTAVY	9	Unmodified	_MSEEHTAVY_					0	0	0		ENST00000464528.5_1_17:1630890-1639119:+|nuORF;WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENST00000464528.5_1_17:1630890-1639119:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7274169921875	2	533.729132	1065.44371	0.38015	0.0002029	-1.6134	-0.00086112	-1.2333	-0.00065823	533.7282009235621	26.653	0.36491	26.292	26.076	26.441	-0.36164					12	6	2	0	0	0	0.050578	1	9643	9643		74.423	13.065	1	30281000			21484	4950	13616	13693	20646	20646					-0.08639363321776727
MSFNWTTNREY	11	Unmodified	_MSFNWTTNREY_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MULTI-MSMS	HCT116MG_D190212_S2	2	724.8165893554688	2	724.816801	1447.61905	0.97068	0.00070357	-0.49854	-0.00036135	0.47214	0.00034221	724.8162540089479	29	0.15496	28.683	28.606	28.761	-0.31613					4	2	2	0	0	0	0.57136	1	10629	10629		38.615	9.5332	1	38929000	+		21485	14250	13617	13694	20647	20647					-0.08685568527539544
MSFNWTTNREY	11	Unmodified	_MSFNWTTNREY_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MULTI-MATCH	HCT116MG_D190212_S1	1		2	724.816801	1447.61905	1.0596	0.00076805	0.52256	0.00037876	1.5822	0.0011468	724.8172938043679	28.668	0.21154	28.668	28.535	28.746	0	-0.063798	0.0010425	NaN	38.615	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5922100	+		21486	14250	13617	13694							-0.08685568527539544
MSFNWTTNREY	11	Unmodified	_MSFNWTTNREY_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	724.816801	1447.61905	0.97068	0.00070357	-0.49854	-0.00036135	0.47214	0.00034221	724.8162540089479	29	0.15496	28.683	28.606	28.761	-0.31613	-0.048401	-0.0004377	NaN	38.615	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38929000	+		21487	14250	13617	13694							-0.08685568527539544
MSFNWTTNREY	11	Unmodified	_MSFNWTTNREY_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MULTI-MATCH	HCT116MG_D190212_S3	3		2	724.816801	1447.61905	0.64411	0.00046686	-0.39745	-0.00028808	0.24666	0.00017878	724.8166394563411	29.066	0.15623	28.844	28.733	28.89	-0.22196	0.1122	-0.00029117	NaN	38.615	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2813500	+		21488	14250	13617	13694							-0.08685568527539544
MSGLIVGI	8	Unmodified	_MSGLIVGI_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MSMS	HCT116MG_D190212_S1	1	395.2305908203125	2	395.230582	788.446611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.092	1	37.092	36.592	37.592	0								0	0	0	0.8837	1	13847	13847		2.8892	0	1				21489	4265	13618	13695	20648	20648					0.04392556593700192
MSIAEIEKKQL	11	Unmodified	_MSIAEIEKKQL_					0	0	0		tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	tr|U7SNI5|U7SNI5_FUSNUSingle-stranded-DNA-specificexonucleaseRecJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01772PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	645.3591918945312	2	645.360313	1288.70607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.63	1	47.315	46.815	47.815	-0.31525								0	0	0	0.95196	1	17892	17892		5.2969	1.3525	1				21490	18364	13619	13696	20649	20649					0.07326837694154165
MSKDSSYLQ	9	Unmodified	_MSKDSSYLQ_					0	0	0		nc|ENSG00000117501|Q5TGP6|MROH9;MROH9|p.L759*|1|0.19|ENSG00000117501|chr1:171025412-171025412|T/-|frameshift_variant;MROH9|p.L824Cfs*10|1|0.03|ENSG00000117501|chr1:171064224-171064224|T/-|frameshift_variant;ENSG00000117501|ENST00000367759|MROH9	nc|ENSG00000117501|Q5TGP6|MROH9	nc|ENSG00000117501|Q5TGP6|MROH9	MULTI-MSMS	HCT116MG_D190212_S3	3	529.745361328125	2	529.744782	1057.47501	0.5112	0.0002708	0.026747	1.4169E-05	0.53794	0.00028497	529.7448309656662	43.38	0.57036	43.075	42.984	43.554	-0.30472					16	10	2	0	0	0	0.35128	1	16204	16204		25.399	0	1	13454000			21491	2578	13620	13697	20650	20650					-0.05142790287686694
MSKEKRDSI	9	Unmodified	_MSKEKRDSI_					0	0	0		nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;ENSG00000152782|ENST00000307534|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	MSMS	HCT116MG_D190212_S4	4	365.2642822265625	3	365.193858	1092.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.033	1	55.724	55.224	56.224	-0.3088								0	0	0	0.76818	1	20995	20995		4.5289	0.58447	1				21492	9503	13621	13698	20651	20651					0.01716580248921673
MSKVEVFFY	9	Unmodified	_MSKVEVFFY_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-4|MED25	REV__nc|ENSG00000104973|Q71SY5-4|MED25	MSMS	HCT116MG_D190212_S2	2	575.1299438476562	2	575.286085	1148.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.167	1	47.045	46.545	47.545	-0.12175								0	0	0	0.76834	1	17986	17986		6.7232	0.53132	1		+		21493	17098	13622	13699	20652	20652					-0.010718484888911917
MSMAESCPFP	10	Unmodified	_MSMAESCPFP_					0	0	0		ENST00000284000.8_1_19:33870665-33870695:+|nuORF	ENST00000284000.8_1_19:33870665-33870695:+|nuORF	ENST00000284000.8_1_19:33870665-33870695:+|nuORF	MSMS	HCT116MG_D190212_S4	4	550.2172241210938	2	550.216488	1098.41842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.758	1	41.382	40.882	41.882	-0.37637								0	0	0	0.94107	1	15323	15323		6.7232	0.51738	1				21494	6943	13623	13700	20653	20653					-0.12684877440210585
MSPPIPGGS	9	Unmodified	_MSPPIPGGS_					0	0	0		ENST00000477161.1_1_10:15256589-15290704:-|nuORF	ENST00000477161.1_1_10:15256589-15290704:-|nuORF	ENST00000477161.1_1_10:15256589-15290704:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	421.70751953125	2	421.707471	841.400389	-0.060337	-2.5445E-05	0.19278	8.1295E-05	0.13244	5.585E-05	421.7075167214453	23.286	0.31267	23.286	23.106	23.418	0					10	5	3	0	0	0	0.21251	1	8288	8288		39.957	0	1	25279000			21495	8209	13624	13701	20654	20654					-0.026655083083937825
MSPPIPGGS	9	Unmodified	_MSPPIPGGS_					0	0	0		ENST00000477161.1_1_10:15256589-15290704:-|nuORF	ENST00000477161.1_1_10:15256589-15290704:-|nuORF	ENST00000477161.1_1_10:15256589-15290704:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	421.707471	841.400389	0.10343	4.3619E-05	0.24469	0.00010319	0.34812	0.00014681	421.70732707898617	23.708	0.26032	23.325	23.195	23.456	-0.38324	0.019195	4.2819E-05	NaN	39.957	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8312700			21496	8209	13624	13701							-0.026655083083937825
MSPPPPPC	8	Unmodified	_MSPPPPPC_					0	0	0		ENST00000309982.9_2_8:104153018-104153069:+|nuORF	ENST00000309982.9_2_8:104153018-104153069:+|nuORF	ENST00000309982.9_2_8:104153018-104153069:+|nuORF	MSMS	HCT116MG_D190212_S3	3	413.18597412109375	2	413.185317	824.356081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.172	1	55.887	55.387	56.387	-0.28566								0	0	0	0.8837	1	21319	21319		5.2307	2.3415	1				21497	7045	13625	13702	20655	20655					-0.06312235726250037
MSQILDEIK	9	Unmodified	_MSQILDEIK_					0	0	0			REV__nc|ENSG00000164136|P40933-2|IL15	REV__nc|ENSG00000164136|P40933-2|IL15	MULTI-MSMS	HCT116MG_D190212_S4	4	538.7864990234375	2	538.78645	1075.55835	0.56498	0.0003044	-0.2886	-0.00015549	0.27638	0.00014891	538.7862072199285	55.74	0.2083	55.428	55.298	55.506	-0.312					5	3	2	0	0	0	0.43552	1	20897	20897		21.537	2.28	1	2204700	+		21498	12983	13626	13703	20656	20656					0.02358946160143205
MSRFFKII	8	Unmodified	_MSRFFKII_					0	0	0		ENST00000511235.1_1_5:134303666-134331399:+|nuORF;CATSPER3|p.M125Vfs*21|1|0.4|ENSG00000152705|chr5:134996392-134996393|TA/-|frameshift_variant;ENSG00000152705|ENST00000282611|CATSPER3	ENST00000511235.1_1_5:134303666-134331399:+|nuORF	ENST00000511235.1_1_5:134303666-134331399:+|nuORF	MSMS	HCT116MG_D190212_S3	3	521.2984619140625	2	521.29933	1040.58411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.728	1	58.464	57.964	58.964	-0.26405								0	0	0	0.8837	1	22347	22347		2.5775	0.51773	1				21499	335	13627	13704	20657	20657					0.0654388519310487
MSRKLALLREK	11	Unmodified	_MSRKLALLREK_					0	0	0			REV__nc|ENSG00000028310|Q9H8M2-1|BRD9	REV__nc|ENSG00000028310|Q9H8M2-1|BRD9	MSMS	HCT116MG_D190212_S1	1	672.9111938476562	2	672.910839	1343.80712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.748	1	54.748	54.248	55.248	0								0	0	0	0.9465	1	21004	21004		8.1555	0.54658	1		+		21500	16085	13628	13705	20658	20658					0.14897334187480737
MSSLWCSG	8	Unmodified	_MSSLWCSG_					0	0	0		nc|ENSG00000152092|O14525-3|ASTN1;ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1	nc|ENSG00000152092|O14525-3|ASTN1	nc|ENSG00000152092|O14525-3|ASTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	435.6777648925781	2	435.677856	869.34116	-0.021924	-9.5518E-06	0.095433	4.1578E-05	0.073509	3.2026E-05	435.6779559202447	25.727	0.25946	25.358	25.187	25.446	-0.36914					7	4	2	0	0	0	0.81821	1	9295	9295		9.3474	0	1	8112500			21501	4134	13629	13706	20659	20659					-0.0987372759424261
MSVNPGFGGQK	11	Unmodified	_MSVNPGFGGQK_					0	0	0		tr|U7SSC4|U7SSC4_FUSNURibulose-phosphate3-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpePE=3SV=1	tr|U7SSC4|U7SSC4_FUSNURibulose-phosphate3-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpePE=3SV=1	tr|U7SSC4|U7SSC4_FUSNURibulose-phosphate3-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpePE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	561.2742919921875	2	561.274041	1120.53353	0.25706	0.00014428	0.16753	9.4029E-05	0.42459	0.00023831	561.2739162671546	37.309	0.25771	37.206	37.078	37.335	-0.10318					7	4	2	0	0	0	0.57136	1	13982	13982		38.615	25.572	1	26687000			21502	18411	13630	13707	20660	20660					-0.021916889225394698
MTCMKGTY	8	Unmodified	_MTCMKGTY_					0	0	0		ENSG00000188419|ENST00000357749|CHM	ENSG00000188419|ENST00000357749|CHM	ENSG00000188419|ENST00000357749|CHM	MSMS	HCT116MG_D190212_S1	1	467.6951599121094	2	467.695192	933.375831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.521	1	25.521	25.021	26.021	0								0	0	0	0.8837	1	9184	9184		12.532	3.9383	1				21503	5984	13631	13708	20661	20661					-0.09352227777799271
MTDIKNDSY	9	Unmodified	_MTDIKNDSY_					0	0	0		ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	HCT116MG_D190212_S1	1	543.742431640625	2	543.742239	1085.46993	0.59067	0.00032117	-0.17483	-9.5061E-05	0.41584	0.00022611	543.742044748642	25.858	0.26144	25.858	25.718	25.98	0					11	4	3	0	0	0	0.0055242	1	9339	9339		133.05	78.279	1	13361000			21504	3505	13632	13709	20662	20662					-0.06939094150311576
MTDIKNDSY	9	Unmodified	_MTDIKNDSY_					0	0	0		ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	HCT116MG_D190212_S2	2	543.7424926757812	2	543.742239	1085.46993	0.65119	0.00035408	0.14233	7.7389E-05	0.79352	0.00043147	543.7421135401756	26.243	0.3106	25.882	25.713	26.024	-0.36164					11	5	3	0	0	0	0.0035631	1	9494	9494		173.69	112.33	1	61835000			21505	3505	13632	13709	20663	20663					-0.06939094150311576
MTDIKNDSY	9	Unmodified	_MTDIKNDSY_					0	0	0		ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	HCT116MG_D190212_S3	3	543.7426147460938	2	543.742239	1085.46993	0.57784	0.00031419	-0.091852	-4.9944E-05	0.48599	0.00026425	543.7421520326894	26.081	0.41716	25.953	25.755	26.172	-0.12795					18	7	4	0	0	0	0.0034381	1	9335	9335		160.69	84.929	1	37538000			21506	3505	13632	13709	20664	20664					-0.06939094150311576
MTDIKNDSY	9	Unmodified	_MTDIKNDSY_					0	0	0		ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	HCT116MG_D190212_S4	4	543.742431640625	2	543.742239	1085.46993	0.42575	0.0002315	-0.089785	-4.882E-05	0.33596	0.00018268	543.7421454025637	26.271	0.31225	25.97	25.817	26.13	-0.30087					12	5	3	0	0	0	0.0035631	1	9358	9358		173.69	107.23	1	8329900			21507	3505	13632	13709	20665	20665					-0.06939094150311576
MTDPIRILV	9	Unmodified	_MTDPIRILV_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	HCT116MG_D190212_S2	2	529.3071899414062	2	529.307352	1056.60015	0.41456	0.00021943	-0.564	-0.00029853	-0.14944	-7.9098E-05	529.3066363741464	55.093	0.25395	54.905	54.765	55.019	-0.18797					9	4	3	0	0	0	0.082877	1	21258	21258		61.602	32.52	1	39094000			21508	3727	13633	13710	20666	20666					0.074115466393323
MTEEEQIAY	9	Unmodified	_MTEEEQIAY_					0	0	0		ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	MSMS	HCT116MG_D190212_S1	1	557.2426147460938	2	557.242072	1112.46959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.537	1	36.537	36.037	37.037	0								0	0	0	0.62451	1	13623	13623		22.736	9.6938	1				21509	4410	13634	13711	20667	20667					-0.08214513870143492
MTEEEQIAY	9	Unmodified	_MTEEEQIAY_					0	0	0		ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	557.2420043945312	2	557.242072	1112.46959	0.29756	0.00016581	0.15348	8.5528E-05	0.45105	0.00025134	557.2421189621903	36.695	0.26011	36.394	36.249	36.509	-0.30113					7	4	2	0	0	0	0.069315	1	13577	13577		65.235	27.261	1	5850700			21510	4410	13634	13711	20668	20668					-0.08214513870143492
MTEEEQIAY	9	Unmodified	_MTEEEQIAY_					0	0	0		ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	MSMS	HCT116MG_D190212_S4	4	557.2420654296875	2	557.242072	1112.46959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.811	1	36.426	35.926	36.926	-0.38486								0	0	0	0.46109	1	13485	13485		30.637	6.616	1				21511	4410	13634	13711	20669	20669					-0.08214513870143492
MTEEEQIAY	9	Unmodified	_MTEEEQIAY_					0	0	0		ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	557.242072	1112.46959	0.35746	0.00019919	0.47893	0.00026688	0.83638	0.00046607	557.2425122201315	36.455	0.21004	36.455	36.312	36.522	0	0.030686	0.00026673	NaN	65.235	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3868100			21512	4410	13634	13711							-0.08214513870143492
MTEFYQENEM	10	Unmodified	_MTEFYQENEM_					0	0	0		nc|ENSG00000289604|P0CG41|CTAGE8;nc|ENSG00000288784|Q8IX94|CTAGE4;ENSG00000271079|ENST00000420911|CTAGE15;ENSG00000236761|ENST00000314099|CTAGE9	nc|ENSG00000289604|P0CG41|CTAGE8	nc|ENSG00000289604|P0CG41|CTAGE8	MSMS	HCT116MG_D190212_S2	2	661.2601928710938	2	661.257396	1320.50024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.308	1	42.239	41.739	42.739	-0.068199								0	0	0	0.90475	1	16011	16011		14.838	0.93222	1				21513	6661	13635	13712	20670	20670					-0.14719103547417944
MTEIGERG	8	Unmodified	_MTEIGERG_					0	0	0		nc|ENSG00000121270|Q96J66-2|ABCC11;ENSG00000121270|ENST00000356608|ABCC11	nc|ENSG00000121270|Q96J66-2|ABCC11	nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-MSMS	HCT116MG_D190212_S2	2	446.71319580078125	2	446.713285	891.412016	0.31583	0.00014109	-0.097115	-4.3382E-05	0.21872	9.7704E-05	446.7131426912547	23.917	0.26002	23.534	23.403	23.663	-0.38324					12	4	4	0	0	0	0.2477	1	8553	8553		64.236	3.8468	1	28041000			21514	2728	13636	13713	20671	20671					-0.03803311285059863
MTEKQLNLY	9	Unmodified	_MTEKQLNLY_					0	0	0		ENST00000536250.1_1_11:61204372-61205638:+|nuORF;ENSG00000256591|ENST00000541135|unknown;ENSG00000167985|ENST00000301761|SDHAF2	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	570.2919921875	2	570.291899	1138.56925	0.31516	0.00017973	-0.19381	-0.00011053	0.12135	6.9205E-05	570.2918756193994	38.655	0.26853	38.57	38.382	38.65	-0.084618					8	4	3	0	0	0	0.0201	1	14549	14549		96.367	57.752	1	24198000			21515	4968	13637	13714	20672	20672					0.0055034853444340115
MTEKQLNLY	9	Unmodified	_MTEKQLNLY_					0	0	0		ENST00000536250.1_1_11:61204372-61205638:+|nuORF;ENSG00000256591|ENST00000541135|unknown;ENSG00000167985|ENST00000301761|SDHAF2	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	570.2918701171875	2	570.291899	1138.56925	0.37062	0.00021136	0.46833	0.00026708	0.83894	0.00047844	570.2917983208105	38.888	0.25974	38.587	38.456	38.716	-0.30137					9	4	3	0	0	0	0.0050238	1	14434	14434		137.42	77.35	1	6879900			21516	4968	13637	13714	20673	20673					0.0055034853444340115
MTEKQLNLY	9	Unmodified	_MTEKQLNLY_					0	0	0		ENST00000536250.1_1_11:61204372-61205638:+|nuORF;ENSG00000256591|ENST00000541135|unknown;ENSG00000167985|ENST00000301761|SDHAF2	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	ENST00000536250.1_1_11:61204372-61205638:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	570.291899	1138.56925	0.53623	0.00030581	0.09914	5.6539E-05	0.63537	0.00036234	570.2918545400328	39.014	0.19999	38.633	38.49	38.69	-0.38055	0.036567	8.0752E-05	NaN	137.42	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1807400			21517	4968	13637	13714							0.0055034853444340115
MTELYDYPKY	10	Unmodified	_MTELYDYPKY_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant;PREP|p.G459Rfs*58|1|0.25|ENSG00000085377|chr6:105288837-105288838|-/T|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	HCT116MG_D190212_S2	2	661.8034057617188	2	661.802297	1321.59004	0.40523	0.00026818	0.78375	0.00051869	1.189	0.00078687	661.802796139902	42.266	0.20638	42.197	42.068	42.274	-0.068199					6	3	2	0	0	0	0.15757	1	16024	16024		63.227	39.438	1	19088000			21518	1452	13638	13715	20674	20674					-0.057891058765562775
MTELYDYPKY	10	Unmodified	_MTELYDYPKY_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant;PREP|p.G459Rfs*58|1|0.25|ENSG00000085377|chr6:105288837-105288838|-/T|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MATCH	HCT116MG_D190212_S1	1		2	661.802297	1321.59004	0.51218	0.00033896	0.31972	0.00021159	0.83191	0.00055056	661.8024831654942	42.304	0.25943	42.304	42.071	42.33	0	0.053392	-0.00053803	NaN	63.227	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5833600			21519	1452	13638	13715							-0.057891058765562775
MTEPPHSQTP	10	Unmodified	_MTEPPHSQTP_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MSMS	HCT116MG_D190212_S3	3	562.7564697265625	2	562.755681	1123.49681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.539	1	18.615	18.115	19.115	0.076334								0	0	0	0.85631	1	6302	6302		21.537	0	1		+		21520	12131	13639	13716	20675	20675					-0.05999985539119734
MTERQDLVY	9	Unmodified	_MTERQDLVY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S1	1	577.7791137695312	2	577.779156	1153.54376	0.51088	0.00029518	-0.27321	-0.00015785	0.23768	0.00013733	577.7789422779049	34.467	0.31243	34.467	34.285	34.597	0					12	5	3	0	0	0	0.032914	1	12788	12788		83.429	35.68	1	41718000			21521	1937	13640	13717	20676	20676					-0.026871259879726495
MTERQDLVY	9	Unmodified	_MTERQDLVY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	577.7793579101562	2	577.779156	1153.54376	0.6551	0.0003785	-0.0062357	-3.6029E-06	0.64886	0.0003749	577.7791135506048	34.583	0.51706	34.424	34.192	34.709	-0.15834					20	8	4	0	0	0	0.0050238	1	12875	12875		137.42	62.495	1	313400000			21522	1937	13640	13717	20677	20677					-0.026871259879726495
MTERQDLVY	9	Unmodified	_MTERQDLVY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	1154.5513916015625	1	1154.55104	1153.54376	0.72438	0.00083633	0.67746	0.00078216	1.4018	0.0016185	1154.5514385506867	34.583	0.20552	34.424	34.296	34.502	-0.15834					6	3	2	0	0	0	0.011132	1	12889	12889		110.55	70.603	1	28240000			21523	1937	13640	13717	20678	20678					-0.026871259879726495
MTERQDLVY	9	Unmodified	_MTERQDLVY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S3	3	577.779296875	2	577.779156	1153.54376	0.26892	0.00015538	-0.028212	-1.63E-05	0.24071	0.00013908	577.7791152872192	34.816	0.51922	34.519	34.336	34.855	-0.29707					24	9	5	0	0	0	0.016744	1	12830	12830		99.755	47.487	1	88798000			21524	1937	13640	13717	20679	20679					-0.026871259879726495
MTERQDLVY	9	Unmodified	_MTERQDLVY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S3	3	1154.55224609375	1	1154.55104	1153.54376	0.2809	0.00032431	-0.017616	-2.0339E-05	0.26328	0.00030397	1154.5512542194413	34.815	0.26027	34.518	34.388	34.648	-0.29707					6	4	2	0	0	0	0.030039	1	12864	12864		86.332	46.382	1	4010100			21525	1937	13640	13717	20680	20680					-0.026871259879726495
MTERQDLVY	9	Unmodified	_MTERQDLVY_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S4	4	577.7789306640625	2	577.779156	1153.54376	0.32336	0.00018683	-0.073906	-4.2701E-05	0.24945	0.00014413	577.7791021278713	34.902	0.30685	34.516	34.391	34.698	-0.38606					14	5	3	0	0	0	0.032914	1	12765	12765		83.429	27.252	1	22646000			21526	1937	13640	13717	20681	20681					-0.026871259879726495
MTERQDLVY	9	Oxidation (M)	_M(Oxidation (M))TERQDLVY_		M(1)TERQDLVY		M(42)TERQDLVY	0	0	1		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	585.7758178710938	2	585.776613	1169.53867	0.41034	0.00024037	0.2195	0.00012858	0.62984	0.00036895	585.7762863093725	32.419	0.36418	32.189	31.995	32.359	-0.23009					13	6	3	0	0	0	0.19011	1	12017	12017		42.312	19.654	1	15810000			21527	1937	13640	13718	20682	20682		38			-0.03931429850604218
MTERQDLVY	9	Oxidation (M)	_M(Oxidation (M))TERQDLVY_		M(1)TERQDLVY		M(57)TERQDLVY	0	0	1		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S3	3	585.7761840820312	2	585.776613	1169.53867	0.54395	0.00031863	-0.47759	-0.00027976	0.066361	3.8873E-05	585.7764438855532	32.544	0.36465	32.265	32.046	32.41	-0.27841					14	6	3	0	0	0	0.10482	1	11931	11931		57.249	20.743	1	9243600			21528	1937	13640	13718	20683	20683		38			-0.03931429850604218
MTERQDLVY	9	Oxidation (M)	_M(Oxidation (M))TERQDLVY_		M(1)TERQDLVY		M(62)TERQDLVY	0	0	1		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S4	4	585.7769775390625	2	585.776613	1169.53867	0.43953	0.00025747	-0.20883	-0.00012233	0.23071	0.00013514	585.7765175868147	32.658	0.25964	32.278	32.105	32.364	-0.37923					9	4	3	0	0	0	0.082877	1	11910	11910		61.602	26.67	1	6395600			21529	1937	13640	13718	20684	20684		38			-0.03931429850604218
MTESKFSKY	9	Unmodified	_MTESKFSKY_					0	0	0		U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant;U2SURP|p.S934Afs*11|1|0.34|ENSG00000163714|chr3:143054963-143054963|C/-|frameshift_variant;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	560.7718505859375	2	560.7708	1119.52705	0.49687	0.00027863	0.30144	0.00016904	0.7983	0.00044767	560.7709490891583	25.217	0.2599	24.842	24.712	24.972	-0.37521					10	4	3	0	0	0	0.0047539	1	9084	9084		139.78	99.543	1	31158000			21530	4624	13641	13719	20685	20685					-0.02793626873926769
MTESKFSKY	9	Unmodified	_MTESKFSKY_					0	0	0		U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant;U2SURP|p.S934Afs*11|1|0.34|ENSG00000163714|chr3:143054963-143054963|C/-|frameshift_variant;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	374.1828308105469	3	374.182959	1119.52705	-0.097293	-3.6405E-05	-0.2843	-0.00010638	-0.38159	-0.00014279	374.1827515658818	25.217	0.20809	24.842	24.712	24.92	-0.37521					6	3	2	0	0	0	0.37942	1	9102	9102		17.863	8.8869	1	14509000			21531	4624	13641	13719	20686	20686					-0.02793626873926769
MTESKFSKY	9	Unmodified	_MTESKFSKY_					0	0	0		U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant;U2SURP|p.S934Afs*11|1|0.34|ENSG00000163714|chr3:143054963-143054963|C/-|frameshift_variant;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	560.7708740234375	2	560.7708	1119.52705	0.45851	0.00025712	-0.15796	-8.858E-05	0.30055	0.00016854	560.7704474564466	24.815	0.26003	24.731	24.601	24.861	-0.083694					6	4	2	0	0	0	0.053079	1	8857	8857		73.196	47.797	1	5629900			21532	4624	13641	13719	20687	20687					-0.02793626873926769
MTFRGGDLIE	10	Unmodified	_MTFRGGDLIE_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MSMS	HCT116MG_D190212_S1	1	380.1915588378906	3	380.190225	1137.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.091	1	35.091	34.591	35.591	0								0	0	0	0.94107	1	13042	13042		6.1918	1.2948	1				21533	2872	13642	13720	20688	20688					-0.014428221253638185
MTFRGGDLIE	10	Unmodified	_MTFRGGDLIE_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MSMS	HCT116MG_D190212_S2	2	380.1914367675781	3	380.190225	1137.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.303	1	35.16	34.66	35.66	-0.14245								0	0	0	0.94107	1	13164	13164		6.1918	0.89496	1				21534	2872	13642	13720	20689	20689					-0.014428221253638185
MTIRLRFGIT	10	Unmodified	_MTIRLRFGIT_					0	0	0		ENST00000368069.7_1_1:160305060-160310036:-|nuORF	ENST00000368069.7_1_1:160305060-160310036:-|nuORF	ENST00000368069.7_1_1:160305060-160310036:-|nuORF	MSMS	HCT116MG_D190212_S1	1	604.3539428710938	2	604.352625	1206.6907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.239	1	47.239	46.739	47.739	0								0	0	0	0.94339	1	17944	17944		6.2058	0.9089	1				21535	7397	13643	13721	20690	20690					0.09562015687606618
MTKVTRVLIPL	11	Unmodified	_MTKVTRVLIPL_					0	0	0		CEP170|p.N481Ifs*26|1|0.13|ENSG00000143702|chr1:243185903-243185903|T/-|frameshift_variant	CEP170|p.N481Ifs*26|1|0.13|ENSG00000143702|chr1:243185903-243185903|T/-|frameshift_variant	CEP170|p.N481Ifs*26|1|0.13|ENSG00000143702|chr1:243185903-243185903|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	635.9011840820312	2	635.899408	1269.78426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.702	1	55.415	54.915	55.915	-0.28773								0	0	0	0.95581	1	21131	21131		3.2813	0	1				21536	405	13644	13722	20691	20691					0.16016315070055498
MTRVLRVG	8	Unmodified	_MTRVLRVG_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	465.7781677246094	2	466.278929	930.543305	0.1079	5.0312E-05	0.31898	0.00014874	0.42689	0.00019905	466.27907963995773	43.704	0.67214	43.704	43.212	43.884	0					16	12	2	0	0	0	0.33409	1	16481	16481		0	0	1	19809000	+		21537	9993	13645	13723	20692	20692					0.07525543873498464
MTTLLCMGFSD	11	Unmodified	_MTTLLCMGFSD_					0	0	0		USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant;USP24|p.F796Lfs*4|1|0.37|ENSG00000162402|chr1:55144178-55144178|A/-|frameshift_variant;USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant;ENSG00000162402|ENST00000294383|USP24;USP24|p.I478Ffs*12|1|0.09|ENSG00000162402|chr1:55156962-55156962|T/-|frameshift_variant	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	609.7638549804688	2	609.763803	1217.51305	0.59745	0.0003643	0.067202	4.0977E-05	0.66465	0.00040528	609.7638560012293	46.403	0.20642	46.291	46.162	46.369	-0.11121					8	3	3	0	0	0	0.71532	1	17701	17701		16.149	2.2431	1	21795000			21538	4517	13646	13724	20693	20693					-0.08700363688876678
MTVKVVVVDR	10	Unmodified	_MTVKVVVVDR_					0	0	0			REV__ITGA1|p.A668V|3|0.25|ENSG00000213949|chr5:52918746-52918746|C/T|missense_variant	REV__ITGA1|p.A668V|3|0.25|ENSG00000213949|chr5:52918746-52918746|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	574.3035888671875	2	573.339184	1144.66381	0.46078	0.00026418	1.7726	0.0010163	2.2334	0.0012805	573.3394249066533	56.529	0.31514	56.347	56.156	56.471	-0.18261					12	5	4	0	0	0	0.84626	1	21819	21819		8.1555	0.24537	1	18133000	+		21539	16909	13647	13725	20694	20694					0.0972690707642414
MTVSHLWFDN	10	Unmodified	_MTVSHLWFDN_					0	0	0		ATP4A|p.E523Sfs*49|1|0.09|ENSG00000105675|chr19:35557782-35557782|G/-|frameshift_variant;ENSG00000105675|ENST00000262623|ATP4A	ATP4A|p.E523Sfs*49|1|0.09|ENSG00000105675|chr19:35557782-35557782|G/-|frameshift_variant	ATP4A|p.E523Sfs*49|1|0.09|ENSG00000105675|chr19:35557782-35557782|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	625.2850341796875	2	625.287148	1248.55974	0.42367	0.00026492	-2.3013	-0.001439	-1.8777	-0.0011741	625.2852546917147	39.147	0.31452	38.846	38.664	38.979	-0.30137					8	5	2	0	0	0	0.87059	1	14562	14562		5.7319	0	1	4243100			21540	226	13648	13726	20695	20695					-0.05459419751059613
MTWWYRWLCRL	11	Unmodified	_MTWWYRWLCRL_					0	0	0		ENST00000474734.5_1_9:136325188-136330196:+|nuORF;ENST00000489519.1_1_9:136325188-136330570:+|nuORF;nc|ENSG00000160325|Q9UGQ2-2|CACFD1;ENSG00000160325|ENST00000316948|CACFD1;nc|ENSG00000160325|Q9UGQ2-3|CACFD1;nc|ENSG00000160325|Q9UGQ2-4|CACFD1	ENST00000474734.5_1_9:136325188-136330196:+|nuORF	ENST00000474734.5_1_9:136325188-136330196:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	806.8966064453125	2	807.397041	1612.77953	0.9226	0.00074491	0.5221	0.00042154	1.4447	0.0011664	807.3975963214199	52.664	0.46273	52.664	52.536	52.999	0					11	8	2	0	0	0	0.36614	1	20153	20153		1.1933	0	1	108600000			21541	4447	13649	13727	20696	20696					-0.0023489234436055995
MVDGKPVNL	9	Unmodified	_MVDGKPVNL_					0	0	0		RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant	RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	486.763427734375	2	486.762778	971.511002	0.16185	7.8783E-05	0.18524	9.0169E-05	0.34709	0.00016895	486.7627967933239	34.272	0.26003	33.978	33.871	34.131	-0.2942					7	4	2	0	0	0	0.13948	1	12652	12652		43.858	16.975	1	3821000			21542	3403	13650	13728	20697	20697					0.024107116798290917
MVDGKPVNL	9	Unmodified	_MVDGKPVNL_					0	0	0		RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant	RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	486.76263427734375	2	486.762778	971.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.525	1	34.139	33.639	34.639	-0.38558								0	0	0	0.59795	1	12610	12610		24.021	6.9077	1				21543	3403	13650	13728	20698	20698					0.024107116798290917
MVDHVTEV	8	Unmodified	_MVDHVTEV_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MSMS	HCT116MG_D190212_S2	2	465.2236022949219	2	465.223485	928.432418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.909	1	29.608	29.108	30.108	-0.30095								0	0	0	0.23148	1	10975	10975		63.563	29.376	1				21544	6414	13651	13729	20699	20699					-0.03466140625266689
MVDPLLTKY	9	Unmodified	_MVDPLLTKY_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-MSMS	HCT116MG_D190212_S1	1	540.294189453125	2	540.293911	1078.57327	0.29889	0.00016149	0.09359	5.0566E-05	0.39248	0.00021205	540.2939659405243	48.28	0.36001	48.28	48.1	48.46	0					12	6	3	0	0	0	0.12421	1	18380	18380		53.404	25.775	1	15784000			21545	1792	13652	13730	20700	20700					0.03712438028151155
MVDPLLTKY	9	Unmodified	_MVDPLLTKY_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-MSMS	HCT116MG_D190212_S2	2	540.2943115234375	2	540.293911	1078.57327	0.68529	0.00037026	-0.24761	-0.00013378	0.43768	0.00023648	540.2938043180405	48.354	0.55774	48.21	47.982	48.54	-0.1437					12	10	2	0	0	0	0.12421	1	18493	18493		53.404	28.005	1	95997000			21546	1792	13652	13730	20701	20701					0.03712438028151155
MVDPLLTKY	9	Unmodified	_MVDPLLTKY_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-MSMS	HCT116MG_D190212_S3	3	540.2941284179688	2	540.293911	1078.57327	0.76576	0.00041373	0.084308	4.5551E-05	0.85006	0.00045928	540.2937364020233	48.586	0.31133	48.27	48.088	48.399	-0.31596					7	5	2	0	0	0	0.13424	1	18287	18287		51.415	23.786	1	9224100			21547	1792	13652	13730	20702	20702					0.03712438028151155
MVDYKVVIP	9	Unmodified	_MVDYKVVIP_					0	0	0			REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MSMS	HCT116MG_D190212_S3	3	532.2962036132812	2	532.296453	1062.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.384	1	32.106	31.606	32.606	-0.27841								0	0	0	0.76877	1	11867	11867		5.2307	0.90143	1		+		21548	13890	13653	13731	20703	20703					0.04956741890782723
MVIIYAIIGL	10	Unmodified	_MVIIYAIIGL_					0	0	0		CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant;CACNA1S|p.P1346Qfs*78|1|0.24|ENSG00000081248|chr1:201051060-201051060|G/-|frameshift_variant;ENSG00000081248|ENST00000362061|CACNA1S	CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	555.8157348632812	2	553.338121	1104.66169	0.46742	0.00025864	0.035221	1.9489E-05	0.50264	0.00027813	553.3381133091129	52.099	0.72992	52.099	51.704	52.434	0					45	13	6	0	0	0	0.88673	1	19969	19969		1.8442	0	1	2680100000			21549	308	13654	13732	20704	20704					0.11354478338625995
MVILLHLL	8	Unmodified	_MVILLHLL_					0	0	0			REV__ENST00000502925.1_1_4:48549577-48553572:-|nuORF	REV__ENST00000502925.1_1_4:48549577-48553572:-|nuORF	MSMS	HCT116MG_D190212_S1	1	476.30706787109375	2	476.306624	950.598695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.295	1	53.295	52.795	53.795	0								0	0	0	0.8837	1	20407	20407		6.3541	0	1		+		21550	10810	13655	13733	20705	20705					0.12141957341236775
MVKCRKCIVK	10	Unmodified	_MVKCRKCIVK_					0	0	0			REV__ENST00000237186.10_1_6:83602743-83775466:-|nuORF	REV__ENST00000237186.10_1_6:83602743-83775466:-|nuORF	MSMS	HCT116MG_D190212_S4	4	403.2326965332031	3	403.232713	1206.67631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.21543	1	-0.049135	-0.54913	0.45087	-0.26456								0	0	0	0.97116	1	80	80		0	0	1		+		21551	14556	13656	13734	20706	20706					0.08123903943442201
MVKLAKAGKN	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MVKLAKAGKN_					1	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000484328.1_1_2:232327850-232329064:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S1	1	551.3262329101562	2	551.326076	1100.6376	0.75005	0.00041352	-0.24665	-0.00013598	0.50341	0.00027754	551.325970075725	28.877	0.26107	28.877	28.746	29.007	0					10	4	3	0	0	0	0.019418	1	10535	10535		121.53	79.694	1	19217000			21552	2442	13657	13735	20707	20707					0.09130637904968353
MVKLAKAGKN	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MVKLAKAGKN_					1	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000484328.1_1_2:232327850-232329064:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S1	1	367.8863220214844	3	367.886476	1100.6376	0.1415	5.2057E-05	-0.31002	-0.00011405	-0.16851	-6.1994E-05	367.88635138762186	28.877	0.36594	28.877	28.641	29.007	0					8	6	2	0	0	0	0.091457	1	10540	10540		57.108	30.019	1	15429000			21553	2442	13657	13735	20708	20708					0.09130637904968353
MVKLKLLY	8	Unmodified	_MVKLKLLY_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MULTI-MSMS	HCT116MG_D190212_S4	4	504.31976318359375	2	504.319731	1006.62491	0.11297	5.6974E-05	0.48804	0.00024613	0.60101	0.0003031	504.3198200847503	49.343	0.4547	48.98	48.661	49.116	-0.36269					18	8	3	0	0	0	0.87576	1	18259	18259		0.79363	0	1	6552900	+		21554	10858	13658	13736	20709	20709					0.12186226512733356
MVKLKLLY	8	Unmodified	_MVKLKLLY_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	504.319731	1006.62491	0.3303	0.00016658	-0.35781	-0.00018045	-0.027506	-1.3872E-05	504.31946856196225	49.357	0.47358	49.041	48.763	49.237	-0.31596	0.030204	-0.00067895	NaN	0.79363	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2735600	+		21555	10858	13658	13736							0.12186226512733356
MVKLKLLY	8	Unmodified	_MVKLKLLY_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	504.319731	1006.62491	0.11297	5.6974E-05	0.48804	0.00024613	0.60101	0.0003031	504.3198200847503	49.343	0.4547	48.98	48.661	49.116	-0.36269	-0.030204	0.0001742	NaN	0.79363	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6552900	+		21556	10858	13658	13736							0.12186226512733356
MVKRSLKMP	9	Unmodified	_MVKRSLKMP_					0	0	0			REV__FGD6|p.L1096P|1|0.11|ENSG00000180263|chr12:95107609-95107609|A/G|missense_variant	REV__FGD6|p.L1096P|1|0.11|ENSG00000180263|chr12:95107609-95107609|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	545.31689453125	2	545.317197	1088.61984	0.57767	0.00031501	-0.75647	-0.00041252	-0.1788	-9.7504E-05	545.3166295803588	49.095	1.4614	48.779	47.932	49.393	-0.31596					49	27	3	0	0	0	0.74607	1	18493	18493		2.0598	2.0598	1	5915300	+		21557	16818	13659	13737	20710	20710					0.07907599378472696
MVLVLVFALT	10	Unmodified	_MVLVLVFALT_					0	0	0		SYNJ2BP|p.P126L|1|0.49|ENSG00000213463|chr14:70373052-70373052|G/A|missense_variant	SYNJ2BP|p.P126L|1|0.49|ENSG00000213463|chr14:70373052-70373052|G/A|missense_variant	SYNJ2BP|p.P126L|1|0.49|ENSG00000213463|chr14:70373052-70373052|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	553.99365234375	2	553.338121	1104.66169	0.50066	0.00027704	-0.054312	-3.0053E-05	0.44635	0.00024698	553.337983142611	53.358	1.3014	53.023	52.619	53.92	-0.33473					66	24	4	0	0	0	0.82332	1	19757	19757		10.074	0	1	52043000			21558	18251	13660	13738	20711	20711					0.11354478338603258
MVLVRGLV	8	Unmodified	_MVLVRGLV_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	HCT116MG_D190212_S4	4	443.7830505371094	2	443.780773	885.546994	0.37085	0.00016458	2.5755	0.0011429	2.9463	0.0013075	443.7825876917697	54.678	0.46883	54.355	54.14	54.609	-0.32349					15	8	2	0	0	0	0.81097	1	20450	20450		10.183	4.423	1	4161700			21559	1974	13661	13739	20712	20712					0.09964213647344877
MVRFREHWQKN	11	Unmodified	_MVRFREHWQKN_					0	0	0		AKAP14|p.N174H|1|0.43|ENSG00000186471|chrX:119920533-119920533|A/C|missense_variant	AKAP14|p.N174H|1|0.43|ENSG00000186471|chrX:119920533-119920533|A/C|missense_variant	AKAP14|p.N174H|1|0.43|ENSG00000186471|chrX:119920533-119920533|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	511.26568603515625	3	510.929738	1529.76739	0.46027	0.00023516	-0.43683	-0.00022319	0.023432	1.1972E-05	511.2644645584671	9.8964	0.26021	9.8964	9.7312	9.9914	0					25	18	2	0	0	0	0.74191	1	3013	3013		0.45452	0.35968	1	499420			21560	87	13662	13740	20713	20713					0.0236920723680214
MVTCPGPS	8	Unmodified	_MVTCPGPS_					0	0	0		ENST00000324822.15_1_17:7293318-7293747:-|nuORF	ENST00000324822.15_1_17:7293318-7293747:-|nuORF	ENST00000324822.15_1_17:7293318-7293747:-|nuORF	MSMS	HCT116MG_D190212_S1	1	396.1764221191406	2	396.174949	790.335346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.16	1	28.16	27.66	28.66	0								0	0	0	0.8837	1	10248	10248		5.7604	0.52976	1				21561	7126	13663	13741	20714	20714					-0.06820826105911237
MVVLLEPIIP	10	Unmodified	_MVVLLEPIIP_					0	0	0		ENST00000420329.6_1_15:91136964-91147660:+|nuORF	ENST00000420329.6_1_15:91136964-91147660:+|nuORF	ENST00000420329.6_1_15:91136964-91147660:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	561.77490234375	2	562.343403	1122.67225	0.20158	0.00011336	0.083918	4.7191E-05	0.2855	0.00016055	562.3434214482814	47.71	1.2874	47.395	46.593	47.88	-0.31524					32	25	2	0	0	0	0.3111	1	18058	18058		1.6526	1.6526	1	33719000			21562	7778	13664	13742	20715	20715					0.11582460993054156
MVVLLEPIIP	10	Unmodified	_MVVLLEPIIP_					0	0	0		ENST00000420329.6_1_15:91136964-91147660:+|nuORF	ENST00000420329.6_1_15:91136964-91147660:+|nuORF	ENST00000420329.6_1_15:91136964-91147660:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	562.343403	1122.67225	0.33755	0.00018982	0.080779	4.5426E-05	0.41832	0.00023524	562.3433029155318	47.656	1.7686	47.287	45.957	47.726	-0.36907	-0.054253	-1.6914E-06	NaN	1.6526	113	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59588000			21563	7778	13664	13742							0.11582460993054156
MVVSVNVHT	9	Unmodified	_MVVSVNVHT_					0	0	0			REV__nc|ENSG00000211895|P01876-1|IGHA1	REV__nc|ENSG00000211895|P01876-1|IGHA1	MULTI-MSMS	HCT116MG_D190212_S2	2	493.26043701171875	2	493.260402	984.506251	0.027824	1.3724E-05	0.3071	0.00015148	0.33492	0.0001652	493.26048099748886	30.453	0.30701	30.168	30.028	30.335	-0.28453					7	5	2	0	0	0	0.47809	1	11247	11247		18.146	0.011366	1	23582000	+		21564	17286	13665	13743	20716	20716					0.013378275370541814
MVVTIILKY	9	Unmodified	_MVVTIILKY_					0	0	0		ENST00000473304.1_1_10:27355373-27366272:-|nuORF	ENST00000473304.1_1_10:27355373-27366272:-|nuORF	ENST00000473304.1_1_10:27355373-27366272:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	540.330322265625	2	540.330296	1078.64604	0.50631	0.00027358	0.054123	2.9244E-05	0.56043	0.00030282	540.3302347204735	47.401	2.1232	47.401	46.285	48.408	0					163	41	5	0	0	0	0.70732	1	18346	18346		4.756	4.756	1	769890000			21565	8176	13666	13744	20717	20717					0.10986191821598368
MVWEGLNVV	9	Unmodified	_MVWEGLNVV_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000570801.1_1_17:49245578-49248962:+|nuORF;ENSG00000243678|ENST00000512737|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;nc|ENSG00000123009|O60361|NME2P1	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S2	2	1046.5350341796875	1	1046.53393	1045.52665	0.80513	0.00084259	0.71435	0.00074759	1.5195	0.0015902	1046.534461145337	56.945	0.20896	56.766	56.635	56.844	-0.17904					6	3	2	0	0	0	0.016134	1	22006	22006		100.37	42.9	1	22684000			21566	9654	13667	13745	20718	20718					0.005709981968720967
MVWEGLNVV	9	Unmodified	_MVWEGLNVV_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000570801.1_1_17:49245578-49248962:+|nuORF;ENSG00000243678|ENST00000512737|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;nc|ENSG00000123009|O60361|NME2P1	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1046.53393	1045.52665	0.80246	0.0008398	1.1353	0.0011881	1.9378	0.0020279	1046.5348586434072	56.763	0.15545	56.763	56.686	56.841	0	-0.001089	0.00027516	NaN	100.37	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11074000			21567	9654	13667	13745							0.005709981968720967
MVWVLKRKK	9	Unmodified	_MVWVLKRKK_					0	0	0		ENST00000372600.8_1_9:131679364-131679535:+|nuORF	ENST00000372600.8_1_9:131679364-131679535:+|nuORF	ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MSMS	HCT116MG_D190212_S2	2	594.3773193359375	2	594.375904	1186.73725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.614	1	59.454	58.954	59.954	-0.16012								0	0	0	0.77008	1	23055	23055		0.6015	0.076735	1				21568	7461	13668	13746	20719	20719					0.1513550030956594
MVYFDVFLF	9	Unmodified	_MVYFDVFLF_					0	0	0			REV__tr|U7SM27|U7SM27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02027PE=4SV=1	REV__tr|U7SM27|U7SM27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02027PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	394.197265625	3	394.196428	1179.56745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.087	1	36.087	35.587	36.587	0								0	0	0	0.76862	1	13444	13444		5.7319	0.83484	1		+		21569	17718	13669	13747	20720	20720					-0.015146604835081234
MWCYRTGP	8	Unmodified	_MWCYRTGP_					0	0	0			REV__ENST00000414990.2_3_7:143295168-143301929:+|nuORF	REV__ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	507.21990966796875	2	507.220223	1012.42589	0.43009	0.00021815	-1.2061	-0.00061178	-0.77605	-0.00039363	507.21970835542163	16.936	0.15576	16.594	16.516	16.672	-0.34183					4	2	2	0	0	0	0.78216	1	5761	5761		13.508	0.97634	1	4799100	+		21570	14124	13670	13748	20721	20721					-0.07982357057619538
MWFQFERKL	9	Unmodified	_MWFQFERKL_					0	0	0		ENST00000442563.5_2_7:66235310-66235424:+|nuORF	ENST00000442563.5_2_7:66235310-66235424:+|nuORF	ENST00000442563.5_2_7:66235310-66235424:+|nuORF	MSMS	HCT116MG_D190212_S3	3	429.088623046875	3	428.890109	1283.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.52156	1	0.58247	0.082466	1.0825	0.060905								0	0	0	0.77018	1	164	164		0.26902	0	1				21571	7933	13671	13749	20722	20722					0.018020402792444656
MWFSEKEL	8	Unmodified	_MWFSEKEL_					0	0	0			REV__MLT1D_dup253|chr1:31570567-31571029:-|1.4791642238045395|0.3630010703550197|2.03|477.0|8|2|sense	REV__MLT1D_dup253|chr1:31570567-31571029:-|1.4791642238045395|0.3630010703550197|2.03|477.0|8|2|sense	MSMS	HCT116MG_D190212_S4	4	535.253173828125	2	535.254785	1068.49502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.541	1	38.159	37.659	38.659	-0.38163								0	0	0	0.8837	1	14129	14129		10.824	1.4408	1		+		21572	17031	13672	13750	20723	20723					-0.036489945570565396
MWGQYPKEWTE	11	Unmodified	_MWGQYPKEWTE_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	HCT116MG_D190212_S4	4	728.3252563476562	2	727.824095	1453.63364	0.4148	0.0003019	-0.76242	-0.00055491	-0.34762	-0.00025301	727.8235874842627	17.295	0.36132	17.125	16.863	17.225	-0.17047					11	6	2	0	0	0	0.74191	1	5688	5688		5.2969	0.39987	1	909590	+		21573	11542	13673	13751	20724	20724					-0.07503496379399621
MWGQYPKEWTE	11	Unmodified	_MWGQYPKEWTE_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	727.824095	1453.63364	0.31657	0.00023041	-1.0858	-0.00079029	-0.76926	-0.00055988	728.324293495308	17.084	0.26024	17.168	17.016	17.277	0.084467	0.021747	-0.00043375	NaN	5.2969	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1936500	+		21574	11542	13673	13751							-0.07503496379399621
MWGWWRWWEHR	11	Unmodified	_MWGWWRWWEHR_					0	0	0		ENST00000564785.5_1_15:75650962-75651301:-|nuORF;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	ENST00000564785.5_1_15:75650962-75651301:-|nuORF	ENST00000564785.5_1_15:75650962-75651301:-|nuORF	MSMS	HCT116MG_D190212_S3	3	858.3930053710938	2	858.393679	1714.7728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.191	1	52.888	52.388	53.388	-0.30305								0	0	0	0.96149	1	20126	20126		0.30703	0.30703	1				21575	8834	13674	13752	20725	20725					-0.05599069180721017
MWKKLKKWL	9	Unmodified	_MWKKLKKWL_					0	0	0			REV__ENSG00000137225|ENST00000398776|CAPN11	REV__ENSG00000137225|ENST00000398776|CAPN11	MSMS	HCT116MG_D190212_S1	1	420.92816162109375	3	420.926495	1259.75766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.321	1	10.321	9.8207	10.821	0								0	0	0	0.77008	1	3159	3159		0.26902	0	1		+		21576	12167	13675	13753	20726	20726					0.13816670969390543
MWRLFILFLFN	11	Unmodified	_MWRLFILFLFN_					0	0	0			REV__nc|ENSG00000165195|P37287-3|PIGA	REV__nc|ENSG00000165195|P37287-3|PIGA	MSMS	HCT116MG_D190212_S4	4	750.4155883789062	2	750.415226	1498.8159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.543	1	32.164	31.664	32.664	-0.37924								0	0	0	0.95636	1	11857	11857		2.9952	0.71247	1		+		21577	13041	13676	13754	20727	20727					0.08644307823988129
MWWHSYWRVWI	11	Unmodified	_MWWHSYWRVWI_					0	0	0		ENST00000295992.7_1_3:142606565-142606607:-|nuORF	ENST00000295992.7_1_3:142606565-142606607:-|nuORF	ENST00000295992.7_1_3:142606565-142606607:-|nuORF	MSMS	HCT116MG_D190212_S2	2	825.3999633789062	2	825.395356	1648.77616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.204	1	41.135	40.635	41.635	-0.068199								0	0	0	0.95521	1	15561	15561		3.5965	2.1146	1				21578	6980	13677	13755	20728	20728					-0.02227819126733266
MWYRLRLLKPQ	11	Unmodified	_MWYRLRLLKPQ_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MSMS	HCT116MG_D190212_S3	3	752.433349609375	2	752.434481	1502.85441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.076	1	23.036	22.536	23.536	-0.03968								0	0	0	0.95954	1	8129	8129		1.3295	0.13619	1				21579	956	13678	13756	20729	20729					0.12309613458523927
MYFEDFYYY	9	Unmodified	_MYFEDFYYY_					0	0	0			REV__tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	REV__tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	670.76416015625	2	670.76264	1339.51073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.904	1	24.904	24.404	25.404	0								0	0	0	0.76669	1	8936	8936		12.532	1.0368	1		+		21580	17731	13679	13757	20730	20730					-0.14544752830693142
MYGSTIDDTRI	11	Unmodified	_MYGSTIDDTRI_					0	0	0			REV__NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant	REV__NAV2|p.V2057Wfs*16|1|0.23|ENSG00000166833|chr11:20095744-20095744|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	636.30029296875	2	636.300452	1270.58635	0.70659	0.0004496	-0.20528	-0.00013062	0.50131	0.00031898	636.3004538964587	34.473	0.25845	34.297	34.124	34.382	-0.17511					10	4	3	0	0	0	0.6977	1	12833	12833		22.658	3.2961	1	43309000	+		21581	13127	13680	13758	20731	20731					-0.03811775650410709
MYHPVPSSKLP	11	Unmodified	_MYHPVPSSKLP_					0	0	0			REV__ENSG00000170191|ENST00000304788|NANP	REV__ENSG00000170191|ENST00000304788|NANP	MSMS	HCT116MG_D190212_S1	1	628.3285522460938	2	628.328816	1254.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.358	1	58.358	57.858	58.858	0								0	0	0	0.95636	1	22478	22478		2.9952	0	1		+		21582	13282	13681	13759	20732	20732					0.02594316696763599
MYIFQLFDYYA	11	Unmodified	_MYIFQLFDYYA_					0	0	0		ENSG00000111181|ENST00000684302|SLC6A12	ENSG00000111181|ENST00000684302|SLC6A12	ENSG00000111181|ENST00000684302|SLC6A12	MULTI-MSMS	HCT116MG_D190212_S4	4	737.3417358398438	2	737.341589	1472.66863	0.85885	0.00063327	-0.34133	-0.00025168	0.51752	0.00038159	737.3413698140002	21.374	0.36372	21.155	20.906	21.27	-0.21832					12	6	3	0	0	0	0.74191	1	7382	7382		1.1933	0	1	1622200			21583	2275	13682	13760	20733	20733					-0.048802535714230544
MYLGCANC	8	Unmodified	_MYLGCANC_					0	0	0			REV__ENSG00000130700|ENST00000252997|GATA5;REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	437.6662292480469	2	437.666434	873.318316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.192	1	14.031	13.531	14.531	-0.16089								0	0	0	0.8837	1	4482	4482		0.79363	0	1		+		21584	11935;12332	13683	13761	20734	20734					-0.12341069983381203
MYLGYAVHRL	10	Unmodified	_MYLGYAVHRL_					0	0	0		ENSG00000198835|ENST00000366714|GJC2	ENSG00000198835|ENST00000366714|GJC2	ENSG00000198835|ENST00000366714|GJC2	MSMS	HCT116MG_D190212_S1	1	408.2190856933594	3	408.218226	1221.63285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.146	1	24.146	23.646	24.646	0								0	0	0	0.92845	1	8631	8631		9.544	1.3884	1				21585	6281	13684	13762	20735	20735					0.030897537621967786
MYLYQDPA	8	Unmodified	_MYLYQDPA_					0	0	0		ENST00000494667.5_1_2:37516515-37516575:-|nuORF	ENST00000494667.5_1_2:37516515-37516575:-|nuORF	ENST00000494667.5_1_2:37516515-37516575:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1000.4452514648438	1	1000.44444	999.437169	0.78092	0.00078127	-0.00076971	-7.7005E-07	0.78015	0.0007805	1000.4443648748716	47.017	0.31062	47.017	46.855	47.165	0					8	5	2	0	0	0	0.71077	1	17887	17887		21.747	2.3076	1	11212000			21586	8373	13685	13763	20736	20736					-0.06257256482501816
MYRANLEKV	9	Unmodified	_MYRANLEKV_					0	0	0			REV__SLC26A9|p.T608Pfs*62|1|0.36|ENSG00000174502|chr1:205921800-205921800|G/-|frameshift_variant	REV__SLC26A9|p.T608Pfs*62|1|0.36|ENSG00000174502|chr1:205921800-205921800|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	375.2005920410156	3	375.202465	1122.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.202	1	43.828	43.328	44.328	-0.37373								0	0	0	0.76954	1	16276	16276		2.4985	0	1		+		21587	13487	13686	13764	20737	20737					0.02917474491187022
MYRHMEKHNYE	11	Unmodified	_MYRHMEKHNYE_					0	0	0		GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1	GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	513.238037109375	3	513.227344	1536.6602	0.34019	0.00017459	-0.31422	-0.00016126	0.025972	1.3329E-05	513.2272581986776	23.184	0.20812	23.184	23.054	23.262	0					5	3	2	0	0	0	0.74191	1	8220	8220		2.2527	0	1	4163400			21588	5436	13687	13765	20738	20738					-0.08666130759706903
MYYYMNDGDET	11	Unmodified	_MYYYMNDGDET_					0	0	0		tr|U7T708|U7T708_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00076PE=4SV=1	tr|U7T708|U7T708_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00076PE=4SV=1	tr|U7T708|U7T708_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00076PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	701.5599365234375	2	701.252311	1400.49007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.395	1	62.163	61.663	62.663	-0.23129								0	0	0	0.96141	1	23834	23834		0.35063	0.043601	1				21589	18649	13688	13766	20739	20739					-0.19415711272677072
NADEARSL	8	Unmodified	_NADEARSL_					0	0	0		ENST00000464196.5_1_Y:22749894-22750047:+|nuORF;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	MSMS	HCT116MG_D190212_S1	1	438.21441650390625	2	438.214506	874.414459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.623	1	22.623	22.123	23.123	0								0	0	0	0.48875	1	8018	8018		43.772	13.136	1				21590	5299	13689	13767	20740	20740					-0.027771395557579126
NADEARSL	8	Unmodified	_NADEARSL_					0	0	0		ENST00000464196.5_1_Y:22749894-22750047:+|nuORF;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	438.2143859863281	2	438.214506	874.414459	0.026028	1.1406E-05	0.24938	0.00010928	0.27541	0.00012069	438.2144878560607	23.053	0.26019	22.667	22.518	22.778	-0.38521					7	4	2	0	0	0	0.1105	1	8213	8213		92.653	23.548	1	23706000			21591	5299	13689	13767	20741	20741					-0.027771395557579126
NADEARSL	8	Unmodified	_NADEARSL_					0	0	0		ENST00000464196.5_1_Y:22749894-22750047:+|nuORF;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	438.2146301269531	2	438.214506	874.414459	0.13962	6.1186E-05	-0.013191	-5.7803E-06	0.12643	5.5405E-05	438.21436718290647	22.432	0.26067	22.413	22.283	22.543	-0.018869					8	4	2	0	0	0	0.1105	1	7872	7872		92.653	13.925	1	4537200			21592	5299	13689	13767	20742	20742					-0.027771395557579126
NADPQAVTM	9	Unmodified	_NADPQAVTM_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MSMS	HCT116MG_D190212_S3	3	473.7188720703125	2	473.718567	945.422581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.802	1	31.532	31.032	32.032	-0.27028								0	0	0	0.74083	1	11632	11632		17.113	0.1706	1				21593	1836	13690	13768	20743	20743					-0.052313286306457485
NADQPLRV	8	Unmodified	_NADQPLRV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S2	2	456.7487487792969	2	456.748516	911.482479	0.31839	0.00014542	-0.21301	-9.7292E-05	0.10538	4.8131E-05	456.7485183300308	31.836	0.36157	31.587	31.458	31.82	-0.24883					10	6	2	0	0	0	0.076688	1	11782	11782		100.37	22.222	1	25269000			21594	5757	13691	13769	20744	20744					0.023197300949163946
NADQPLRV	8	Unmodified	_NADQPLRV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S3	3	456.748779296875	2	456.748516	911.482479	0.22549	0.00010299	0.15876	7.2512E-05	0.38424	0.0001755	456.7485178406623	31.905	0.31196	31.635	31.482	31.794	-0.27027					12	5	3	0	0	0	0.12693	1	11692	11692		88.904	30.225	1	9860600			21595	5757	13691	13769	20745	20745					0.023197300949163946
NADQPLRV	8	Unmodified	_NADQPLRV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MSMS	HCT116MG_D190212_S4	4	456.7485656738281	2	456.748516	911.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.083	1	31.708	31.208	32.208	-0.37529								0	0	0	0.79325	1	11671	11671		23.148	5.0134	1				21596	5757	13691	13769	20746	20746					0.023197300949163946
NADQPLRV	8	Unmodified	_NADQPLRV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MSMS	HCT116MG_D190212_S4	4	456.7487487792969	2	456.748516	911.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.161	1	31.786	31.286	32.286	-0.37529								0	0	0	0.62515	1	11702	11702		36.127	1.7253	1				21597	5757	13691	13769	20747	20747					0.023197300949163946
NADTVSSKL	9	Unmodified	_NADTVSSKL_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MSMS	HCT116MG_D190212_S2	2	467.7460021972656	2	467.745639	933.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.437	1	27.095	26.595	27.595	-0.34201								0	0	0	0.5317	1	9966	9966		27.223	3.2027	1				21598	823	13692	13770	20748	20748					0.007325867925828788
NADTVSSKL	9	Unmodified	_NADTVSSKL_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MSMS	HCT116MG_D190212_S3	3	467.7460632324219	2	467.745639	933.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.28	1	27.111	26.611	27.611	-0.16933								0	0	0	0.403	1	9824	9824		33.445	8.771	1				21599	823	13692	13770	20749	20749					0.007325867925828788
NADTVSSKL	9	Unmodified	_NADTVSSKL_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MSMS	HCT116MG_D190212_S4	4	467.745361328125	2	467.745639	933.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.47	1	27.148	26.648	27.648	-0.32157								0	0	0	0.60272	1	9835	9835		23.79	7.9426	1				21600	823	13692	13770	20750	20750					0.007325867925828788
NAEQMKAFWK	10	Unmodified	_NAEQMKAFWK_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MSMS	HCT116MG_D190212_S2	2	626.8118896484375	2	626.81079	1251.60703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.255	1	30.988	30.488	31.488	-0.26704								0	0	0	0.89062	1	11523	11523		17.113	3.2068	1				21601	4315	13693	13771	20751	20751					-0.008711404800806122
NAETQEILA	9	Unmodified	_NAETQEILA_					0	0	0		sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;sp|F5HDQ6|DNBI_HCMVMMajorDNA-bindingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=DBPPE=3SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	495.2562561035156	2	494.750921	987.48729	0.31055	0.00015364	2.7004	0.001336	3.0109	0.0014897	494.7507364826474	30.125	1.2342	30.125	29.529	30.763	0					61	23	4	0	0	0	0.24895	1	11202	11202		36.127	5.9022	1	91316000			21602	18197	13694	13772	20752	20752					-0.0069543055299163825
NAGGAKKLES	10	Unmodified	_NAGGAKKLES_					0	0	0			REV__ENST00000567278.1_1_16:84600453-84600705:-|nuORF	REV__ENST00000567278.1_1_16:84600453-84600705:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	487.7565612792969	2	487.766906	973.519259	0.46468	0.00022665	1.3572	0.00066198	1.8218	0.00088864	487.76727805977913	34.478	0.46526	34.303	34.02	34.485	-0.17512					9	8	2	0	0	0	0.28843	1	12861	12861		13.042	0	1	7775300	+		21603	11181	13695	13773	20753	20753					0.031439819208117115
NAIEGGTQL	9	Unmodified	_NAIEGGTQL_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	HCT116MG_D190212_S2	2	902.4596557617188	1	902.457787	901.45051	1.0896	0.0009833	0.72363	0.00065304	1.8132	0.0016363	902.4587145138544	34.429	0.25923	34.253	34.072	34.331	-0.17512					7	4	2	0	0	0	0.0059958	1	12818	12818		128.93	18.258	1	20339000			21604	3109	13696	13774	20754	20754					-0.0041568237888895965
NAIEGGTQL	9	Unmodified	_NAIEGGTQL_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	902.457787	901.45051	0.77437	0.00069883	-0.021256	-1.9183E-05	0.75311	0.00067965	902.4573510023265	34.259	0.15638	34.259	34.181	34.337	0	0.0026048	-0.00015124	NaN	128.93	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4448400			21605	3109	13696	13774							-0.0041568237888895965
NAKIIVPV	8	Unmodified	_NAKIIVPV_					0	0	0		tr|U7SUY3|U7SUY3_FUSNUDNAalkylationrepairenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01436PE=4SV=1	tr|U7SUY3|U7SUY3_FUSNUDNAalkylationrepairenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01436PE=4SV=1	tr|U7SUY3|U7SUY3_FUSNUDNAalkylationrepairenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01436PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	427.2013854980469	2	427.278921	852.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.65	1	57.355	56.855	57.855	-0.29465								0	0	0	0.8837	1	21645	21645		5.2307	2.6532	1				21606	18482	13697	13775	20755	20755					0.11111867145143606
NAKNVIPV	8	Unmodified	_NAKNVIPV_					0	0	0		ENST00000482661.1_1_3:179094869-179095079:+|nuORF	ENST00000482661.1_1_3:179094869-179095079:+|nuORF	ENST00000482661.1_1_3:179094869-179095079:+|nuORF	MSMS	HCT116MG_D190212_S1	1	427.75689697265625	2	427.758352	853.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.695	1	61.695	61.195	62.195	0								0	0	0	0.8837	1	23810	23810		2.5775	0	1				21607	8263	13698	13776	20756	20756					0.0695410610566114
NAMQDVQSH	9	Unmodified	_NAMQDVQSH_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2;nc|ENSG00000141298|Q76I76-4|SSH2;SSH2|p.M625Cfs*32|1|0.2|ENSG00000141298|chr17:29636277-29636277|G/-|frameshift_variant;SSH2|p.F653Lfs*4|1|0.12|ENSG00000141298|chr17:29636190-29636190|A/-|frameshift_variant;SSH2|p.K799Nfs*18|1|0.32|ENSG00000141298|chr17:29632716-29632716|T/-|frameshift_variant	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MSMS	HCT116MG_D190212_S3	3	515.2233276367188	2	515.224548	1028.43454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.525	1	15.611	15.111	16.111	0.085423								0	0	0	0.46109	1	5086	5086		30.637	5.2372	1				21608	3708	13699	13777	20757	20757					-0.07853711887469217
NANPDWGQD	9	Unmodified	_NANPDWGQD_					0	0	0			REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	508.772705078125	2	508.707045	1015.39954	0.33942	0.00017267	0.28808	0.00014655	0.6275	0.00031922	508.70702091160626	18.428	0.31244	18.428	18.246	18.558	0					7	5	2	0	0	0	0.21251	2	6330	6330;6364		39.957	18.211	1	1722600	+		21609	14981	13700	13778	20758;20759	20758					-0.10754631423753835
NANPDWGQD	9	Unmodified	_NANPDWGQD_					0	0	0			REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	508.772705078125	2	508.707045	1015.39954	0.33942	0.00017267	0.28808	0.00014655	0.6275	0.00031922	508.70702091160626	18.428	0.31244	18.428	18.246	18.558	0					7	5	2	0	0	0	0.17767	1	6330	6330		39.957	18.211	1	1722600	+		21610	14981	13700	13778	20760	20760					-0.10754631423753835
NANQKIHIKEK	11	Unmodified	_NANQKIHIKEK_					0	0	0		ENSG00000178187|ENST00000519564|ZNF454	ENSG00000178187|ENST00000519564|ZNF454	ENSG00000178187|ENST00000519564|ZNF454	MSMS	HCT116MG_D190212_S2	2	661.88134765625	2	661.880593	1321.74663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.138	1	51.952	51.452	52.452	-0.18662								0	0	0	0.92983	1	20022	20022		16.149	1.7437	1				21611	5491	13701	13779	20761	20761					0.09862940128778064
NAPVPSPGGH	10	Unmodified	_NAPVPSPGGH_					0	0	0		ENST00000339733.9_2_14:23596388-23597552:-|nuORF	ENST00000339733.9_2_14:23596388-23597552:-|nuORF	ENST00000339733.9_2_14:23596388-23597552:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	466.73248291015625	2	466.732866	931.451179	0.32573	0.00015203	-0.84156	-0.00039278	-0.51584	-0.00024076	466.7325062314746	20.896	0.47595	20.896	20.644	21.12	0					12	8	2	0	0	0	0.78781	1	7357	7357		13.042	2.9685	1	2377700			21612	7208	13702	13780	20762	20762					-0.01728842939178321
NAQALEKGIK	10	Unmodified	_NAQALEKGIK_					0	0	0		tr|U7SQR0|U7SQR0_FUSNUDctPfamilyTRAPtransportersolutereceptorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01661PE=4SV=1	tr|U7SQR0|U7SQR0_FUSNUDctPfamilyTRAPtransportersolutereceptorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01661PE=4SV=1	tr|U7SQR0|U7SQR0_FUSNUDctPfamilyTRAPtransportersolutereceptorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01661PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	535.7776489257812	2	536.31148	1070.60841	0.52378	0.00028091	-0.38838	-0.00020829	0.1354	7.2614E-05	536.3113394487881	26.873	0.20837	26.714	26.609	26.817	-0.15956					5	3	2	0	0	0	0.26807	1	9630	9630		27.629	18.246	1	2911800			21613	18390	13703	13781	20763	20763					0.07592816880310238
NAQALEKGIK	10	Unmodified	_NAQALEKGIK_					0	0	0		tr|U7SQR0|U7SQR0_FUSNUDctPfamilyTRAPtransportersolutereceptorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01661PE=4SV=1	tr|U7SQR0|U7SQR0_FUSNUDctPfamilyTRAPtransportersolutereceptorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01661PE=4SV=1	tr|U7SQR0|U7SQR0_FUSNUDctPfamilyTRAPtransportersolutereceptorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01661PE=4SV=1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	536.31148	1070.60841	0.40623	0.00021786	-0.056887	-3.0509E-05	0.34934	0.00018735	536.3112470973585	26.735	0.15631	26.735	26.605	26.761	0	-0.029311	-2.0374E-05	NaN	27.629	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6827300			21614	18390	13703	13781							0.07592816880310238
NAQLMHAA	8	Unmodified	_NAQLMHAA_					0	0	0			REV__ENSG00000091640|ENST00000206020|SPAG7	REV__ENSG00000091640|ENST00000206020|SPAG7	MULTI-SECPEP	HCT116MG_D190212_S2	2	428.7174987792969	2	428.210712	854.406871	-0.078509	-3.3618E-05	-1.1613	-0.00049727	-1.2398	-0.00053089	428.21116882711783	15.277	0.2608	14.95	14.81	15.071	-0.32684					5	4	2	0	0	0	0.30262	1	5054	5054		19.439	10.846	1	876020	+		21615	11002	13704	13782	20764	20764					-0.02615570357033903
NASRDEYV	8	Unmodified	_NASRDEYV_					0	0	0		ENST00000505186.1_1_4:2743986-2747794:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	ENST00000505186.1_1_4:2743986-2747794:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	476.72772216796875	2	477.219788	952.425024	0.31172	0.00014876	-0.27622	-0.00013182	0.0355	1.6942E-05	477.21986531326024	24.593	0.15692	24.213	24.082	24.239	-0.38003					4	2	2	0	0	0	0.31097	1	8770	8770		16.942	12.186	1	3794900			21616	5036	13705	13783	20765	20765					-0.05309156901330425
NAWSCCCWHC	10	Unmodified	_NAWSCCCWHC_					0	0	0			REV__ENSG00000155890|ENST00000286349|TRIM42;REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	404.6285400390625	3	404.79958	1211.37691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.31	1	13.38	12.88	13.88	0.069158								0	0	0	0.97054	1	4213	4213		0.13989	0	1		+		21617	12711;18014	13706	13784	20766	20766					-0.2203233668053599
NAWSCCCWHC	10	Unmodified	_NAWSCCCWHC_					0	0	0			REV__ENSG00000155890|ENST00000286349|TRIM42;REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	REV__TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	404.79931640625	3	404.79958	1211.37691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.421	1	13.49	12.99	13.99	0.069158								0	0	0	0.97054	1	4255	4255		0.13989	0	1		+		21618	12711;18014	13706	13784	20767	20767					-0.2203233668053599
NAYEAKEVV	9	Unmodified	_NAYEAKEVV_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	HCT116MG_D190212_S1	1	1022.5173950195312	1	1022.5153	1021.50803	0.62817	0.00064231	0.97013	0.00099197	1.5983	0.0016343	1022.5168492589678	42.379	0.20833	42.379	42.226	42.435	0					5	3	2	0	0	0	0.19273	1	15992	15992		36.127	3.3413	1	6707800			21619	1467	13707	13785	20768	20768					-0.0018684017333043812
NCACEYEDCC	10	Unmodified	_NCACEYEDCC_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MSMS	HCT116MG_D190212_S1	1	576.6587524414062	2	576.658677	1151.3028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.048	1	41.048	40.548	41.548	0								0	0	0	0.97116	1	15446	15446		0	0	1		+		21620	11410	13708	13786	20769	20769					-0.26679769353381744
NCHHCDFCE	9	Unmodified	_NCHHCDFCE_					0	0	0			REV__FHL2|p.R4C|1|0.39|ENSG00000115641|chr2:105386507-105386507|G/A|missense_variant	REV__FHL2|p.R4C|1|0.39|ENSG00000115641|chr2:105386507-105386507|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	554.1762084960938	2	554.175686	1106.33682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.459	1	12.162	11.662	12.662	-0.29721								0	0	0	0.77025	1	4073	4073		0	0	1		+		21621	16822	13709	13787	20770	20770					-0.21209560079455514
NCHHCDFCE	9	Unmodified	_NCHHCDFCE_					0	0	0			REV__FHL2|p.R4C|1|0.39|ENSG00000115641|chr2:105386507-105386507|G/A|missense_variant	REV__FHL2|p.R4C|1|0.39|ENSG00000115641|chr2:105386507-105386507|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	554.1757202148438	2	554.175686	1106.33682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.433	1	12.264	11.764	12.764	-0.16903								0	0	0	0.77025	1	3861	3861		0	0	1		+		21622	16822	13709	13787	20771	20771					-0.21209560079455514
NCRKWREEGKA	11	Unmodified	_NCRKWREEGKA_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S1	1	688.8458251953125	2	688.846227	1375.6779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.319	1	44.319	43.819	44.819	0								0	0	0	0.94755	1	16765	16765		7.609	0.50723	1		+		21623	12706	13710	13788	20772	20772					0.00508952557424891
NDAGEETPNE	10	Unmodified	_NDAGEETPNE_					0	0	0			REV__ENSG00000122965|ENST00000261741|RBM19	REV__ENSG00000122965|ENST00000261741|RBM19	MSMS	HCT116MG_D190212_S2	2	359.14349365234375	3	359.143997	1074.41016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.197	1	58.027	57.527	58.527	-0.1703								0	0	0	0.96836	1	22485	22485		0.62683	0.27619	1		+		21624	11751	13711	13789	20773	20773					-0.12406693560001258
NDAQLLHLFHD	11	Unmodified	_NDAQLLHLFHD_					0	0	0			REV__nc|ENSG00000173226|Q15051-3|IQCB1	REV__nc|ENSG00000173226|Q15051-3|IQCB1	MULTI-MSMS	HCT116MG_D190212_S4	4	661.8265991210938	2	661.828026	1321.6415	0.65959	0.00043653	-2.5807	-0.001708	-1.9211	-0.0012714	661.8262859889446	20.788	0.4154	20.578	20.344	20.76	-0.20959					11	7	2	0	0	0	0.65047	1	7147	7147		29.841	14.592	1	2423000	+		21625	13426	13712	13790	20774	20774					-0.006456010676174628
NDAQLLHLFHD	11	Unmodified	_NDAQLLHLFHD_					0	0	0			REV__nc|ENSG00000173226|Q15051-3|IQCB1	REV__nc|ENSG00000173226|Q15051-3|IQCB1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	661.828026	1321.6415	0.60882	0.00040293	-2.7459	-0.0018173	-2.1371	-0.0014144	661.8259591046838	20.576	0.41652	20.611	20.298	20.714	0.034473	0.016516	-3.7543E-05	NaN	29.841	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2858400	+		21626	13426	13712	13790							-0.006456010676174628
NDAQLLHLFHD	11	Unmodified	_NDAQLLHLFHD_					0	0	0			REV__nc|ENSG00000173226|Q15051-3|IQCB1	REV__nc|ENSG00000173226|Q15051-3|IQCB1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	661.828026	1321.6415	0.65959	0.00043653	-2.5807	-0.001708	-1.9211	-0.0012714	661.8262859889446	20.788	0.4154	20.578	20.344	20.76	-0.20959	-0.016516	0.00018123	NaN	29.841	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2423000	+		21627	13426	13712	13790							-0.006456010676174628
NDAWLAGV	8	Unmodified	_NDAWLAGV_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MSMS	HCT116MG_D190212_S3	3	423.2124328613281	2	423.211235	844.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.975	1	42.67	42.17	43.17	-0.30472								0	0	0	0.8837	1	16026	16026		5.2307	0	1				21628	6160	13713	13791	20775	20775					-0.020510327164629416
NDAWLAGV	8	Unmodified	_NDAWLAGV_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MSMS	HCT116MG_D190212_S4	4	423.2127685546875	2	423.211235	844.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.015	1	42.64	42.14	43.14	-0.37493								0	0	0	0.8837	1	15831	15831		5.2307	0	1				21629	6160	13713	13791	20776	20776					-0.020510327164629416
NDCGDNSDEH	10	Unmodified	_NDCGDNSDEH_					0	0	0		LRP2|p.N2855H|1|0.16|ENSG00000081479|chr2:169198801-169198801|T/G|missense_variant	LRP2|p.N2855H|1|0.16|ENSG00000081479|chr2:169198801-169198801|T/G|missense_variant	LRP2|p.N2855H|1|0.16|ENSG00000081479|chr2:169198801-169198801|T/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	369.1221008300781	3	369.121087	1104.34143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.97	1	64.857	64.357	65.357	-0.11256								0	0	0	0.97045	1	25101	25101		0.15932	0.15932	1				21630	9304	13714	13792	20777	20777					-0.20656681131345067
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.10711669921875	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.14012	1	0.14012	-0.35988	0.64012	0								0	0	0	0.97116	1	56	56		0	0	1		+		21631	11238	13715	13793	20778	20778					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.10699462890625	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.70898	1	0.70898	0.20898	1.209	0								0	0	0	0.97116	1	224	224		0	0	1		+		21632	11238	13715	13793	20779	20779					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.1066589355469	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2565	1	1.2565	0.7565	1.7565	0								0	0	0	0.97116	1	386	386		0	0	1		+		21633	11238	13715	13793	20780	20780					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.10638427734375	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8177	1	1.8177	1.3177	2.3177	0								0	0	0	0.97116	1	551	551		0	0	1		+		21634	11238	13715	13793	20781	20781					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.1060791015625	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.38	1	2.38	1.88	2.88	0								0	0	0	0.97116	1	721	721		0	0	1		+		21635	11238	13715	13793	20782	20782					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.106689453125	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7446	1	2.7446	2.2446	3.2446	0								0	0	0	0.97116	1	825	825		0	0	1		+		21636	11238	13715	13793	20783	20783					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.1066589355469	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.4534	1	3.4534	2.9534	3.9534	0								0	0	0	0.97116	1	1035	1035		0	0	1		+		21637	11238	13715	13793	20784	20784					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.1068115234375	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.7811	1	3.7811	3.2811	4.2811	0								0	0	0	0.97116	1	1138	1138		0	0	1		+		21638	11238	13715	13793	20785	20785					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.106689453125	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.978	1	3.978	3.478	4.478	0								0	0	0	0.97116	1	1194	1194		0	0	1		+		21639	11238	13715	13793	20786	20786					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.1062927246094	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1045	1	6.1045	5.6045	6.6045	0								0	0	0	0.97116	1	1838	1838		0	0	1		+		21640	11238	13715	13793	20787	20787					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.10699462890625	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.6135	1	6.6135	6.1135	7.1135	0								0	0	0	0.97116	1	1991	1991		0	0	1		+		21641	11238	13715	13793	20788	20788					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.1070556640625	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1411	1	8.1411	7.6411	8.6411	0								0	0	0	0.97116	1	2455	2455		0	0	1		+		21642	11238	13715	13793	20789	20789					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.1069641113281	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4622	1	8.4622	7.9622	8.9622	0								0	0	0	0.97116	1	2558	2558		0	0	1		+		21643	11238	13715	13793	20790	20790					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.23455810546875	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6531	1	9.6531	9.1531	10.153	0								0	0	0	0.97116	1	2931	2931		0	0	1		+		21644	11238	13715	13793	20791	20791					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.1070251464844	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7034	1	9.7034	9.2034	10.203	0								0	0	0	0.97116	1	2947	2947		0	0	1		+		21645	11238	13715	13793	20792	20792					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.1067199707031	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.384	1	10.384	9.8843	10.884	0								0	0	0	0.97116	1	3183	3183		0	0	1		+		21646	11238	13715	13793	20793	20793					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.10699462890625	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.137	1	64.137	63.637	64.637	0								0	0	0	0.97116	1	24751	24751		0	0	1		+		21647	11238	13715	13793	20794	20794					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S1	1	390.10675048828125	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.664	1	64.664	64.164	65.164	0								0	0	0	0.97116	1	24929	24929		0	0	1		+		21648	11238	13715	13793	20795	20795					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.10662841796875	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.15675	1	0.15281	-0.34719	0.65281	-0.0039395								0	0	0	0.97116	1	62	62		0	0	1		+		21649	11238	13715	13793	20796	20796					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1072998046875	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.70329	1	0.69703	0.19703	1.197	-0.00626								0	0	0	0.97116	1	236	236		0	0	1		+		21650	11238	13715	13793	20797	20797					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1065979003906	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2313	1	1.225	0.72502	1.725	-0.0062599								0	0	0	0.97116	1	402	402		0	0	1		+		21651	11238	13715	13793	20798	20798					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1068420410156	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2761	1	3.2139	2.7139	3.7139	-0.062129								0	0	0	0.97116	1	1050	1050		0	0	1		+		21652	11238	13715	13793	20799	20799					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1065368652344	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2989	1	4.2099	3.7099	4.7099	-0.089082								0	0	0	0.97116	1	1363	1363		0	0	1		+		21653	11238	13715	13793	20800	20800					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1064758300781	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3356	1	5.1875	4.6875	5.6875	-0.14816								0	0	0	0.97116	1	1687	1687		0	0	1		+		21654	11238	13715	13793	20801	20801					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1067199707031	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8676	1	6.6703	6.1703	7.1703	-0.19725								0	0	0	0.97116	1	2161	2161		0	0	1		+		21655	11238	13715	13793	20802	20802					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.10693359375	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.145	1	6.9478	6.4478	7.4478	-0.19725								0	0	0	0.97116	1	2240	2240		0	0	1		+		21656	11238	13715	13793	20803	20803					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1068420410156	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9415	1	8.6974	8.1974	9.1974	-0.24401								0	0	0	0.97116	1	2795	2795		0	0	1		+		21657	11238	13715	13793	20804	20804					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1065673828125	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3239	1	9.0689	8.5689	9.5689	-0.25508								0	0	0	0.97116	1	2911	2911		0	0	1		+		21658	11238	13715	13793	20805	20805					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1065979003906	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4639	1	9.2088	8.7088	9.7088	-0.25508								0	0	0	0.97116	1	2958	2958		0	0	1		+		21659	11238	13715	13793	20806	20806					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1065979003906	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.387	1	10.122	9.6219	10.622	-0.26472								0	0	0	0.97116	1	3282	3282		0	0	1		+		21660	11238	13715	13793	20807	20807					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1068420410156	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.518	1	10.245	9.7448	10.745	-0.27365								0	0	0	0.97116	1	3332	3332		0	0	1		+		21661	11238	13715	13793	20808	20808					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.2960510253906	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.634	1	10.36	9.8602	10.86	-0.27365								0	0	0	0.97116	1	3376	3376		0	0	1		+		21662	11238	13715	13793	20809	20809					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1070251464844	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.928	1	10.655	10.155	11.155	-0.27365								0	0	0	0.97116	1	3490	3490		0	0	1		+		21663	11238	13715	13793	20810	20810					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.10699462890625	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.19	1	10.908	10.408	11.408	-0.28186								0	0	0	0.97116	1	3592	3592		0	0	1		+		21664	11238	13715	13793	20811	20811					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.10693359375	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.506	1	12.209	11.709	12.709	-0.29721								0	0	0	0.97116	1	4090	4090		0	0	1		+		21665	11238	13715	13793	20812	20812					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1062316894531	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.017	1	12.719	12.219	13.219	-0.29721								0	0	0	0.97116	1	4260	4260		0	0	1		+		21666	11238	13715	13793	20813	20813					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1069641113281	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.438	1	62.303	61.803	62.803	-0.13585								0	0	0	0.97116	1	24201	24201		0	0	1		+		21667	11238	13715	13793	20814	20814					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1070251464844	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.636	1	63.514	63.014	64.014	-0.12264								0	0	0	0.97116	1	24664	24664		0	0	1		+		21668	11238	13715	13793	20815	20815					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.10650634765625	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.106	1	63.99	63.49	64.49	-0.11586								0	0	0	0.97116	1	24833	24833		0	0	1		+		21669	11238	13715	13793	20816	20816					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S2	2	390.1069641113281	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.177	1	64.061	63.561	64.561	-0.11585								0	0	0	0.97116	1	24850	24850		0	0	1		+		21670	11238	13715	13793	20817	20817					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.1063232421875	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.22605	1	0.28695	-0.21305	0.78695	0.060905								0	0	0	0.97116	1	85	85		0	0	1		+		21671	11238	13715	13793	20818	20818					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.1064147949219	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3172	1	1.3781	0.87808	1.8781	0.060905								0	0	0	0.97116	1	412	412		0	0	1		+		21672	11238	13715	13793	20819	20819					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.1067199707031	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9745	1	2.0354	1.5354	2.5354	0.060905								0	0	0	0.97116	1	601	601		0	0	1		+		21673	11238	13715	13793	20820	20820					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.1065673828125	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5784	1	2.6337	2.1337	3.1337	0.055284								0	0	0	0.97116	1	781	781		0	0	1		+		21674	11238	13715	13793	20821	20821					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.1064147949219	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8017	1	5.8192	5.3192	6.3192	0.017489								0	0	0	0.97116	1	1756	1756		0	0	1		+		21675	11238	13715	13793	20822	20822					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.1070251464844	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8207	1	5.8381	5.3381	6.3381	0.017489								0	0	0	0.97116	1	1763	1763		0	0	1		+		21676	11238	13715	13793	20823	20823					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.10638427734375	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3071	1	6.3214	5.8214	6.8214	0.01438								0	0	0	0.97116	1	1909	1909		0	0	1		+		21677	11238	13715	13793	20824	20824					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.1065979003906	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9536	1	9.9861	9.4861	10.486	0.032559								0	0	0	0.97116	1	3011	3011		0	0	1		+		21678	11238	13715	13793	20825	20825					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	389.77880859375	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.693	1	12.755	12.255	13.255	0.06246								0	0	0	0.97116	1	3978	3978		0	0	1		+		21679	11238	13715	13793	20826	20826					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.1064758300781	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.711	1	12.774	12.274	13.274	0.06246								0	0	0	0.97116	1	3985	3985		0	0	1		+		21680	11238	13715	13793	20827	20827					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S3	3	390.1065979003906	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.327	1	13.396	12.896	13.896	0.069158								0	0	0	0.97116	1	4219	4219		0	0	1		+		21681	11238	13715	13793	20828	20828					-0.2809767290339096
NDDDDDDDDD	10	Unmodified	_NDDDDDDDDD_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MSMS	HCT116MG_D190212_S4	4	390.1067199707031	3	390.105936	1167.29598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.9331	1	2.6685	2.1685	3.1685	-0.26456								0	0	0	0.97116	1	900	900		0	0	1		+		21682	11238	13715	13793	20829	20829					-0.2809767290339096
NDEDDDDED	9	Unmodified	_NDEDDDDED_					0	0	0		ENSG00000122085|ENST00000391980|MTERF4	ENSG00000122085|ENST00000391980|MTERF4	ENSG00000122085|ENST00000391980|MTERF4	MSMS	HCT116MG_D190212_S1	1	541.1586303710938	2	541.157445	1080.30034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.261	1	9.261	8.761	9.761	0								0	0	0	0.77018	1	2804	2804		0	0	1				21683	2750	13716	13794	20830	20830					-0.2366016368982855
NDFADPHDFNY	11	Unmodified	_NDFADPHDFNY_					0	0	0			REV__nc|ENSG00000130717|Q9HA47-4|UCK1	REV__nc|ENSG00000130717|Q9HA47-4|UCK1	MULTI-MSMS	HCT116MG_D190212_S1	1	677.7706298828125	2	677.770374	1353.52619	0.64414	0.00043658	-0.17335	-0.00011749	0.47079	0.00031909	677.7701192331385	44.603	0.31391	44.603	44.41	44.724	0					16	5	4	0	0	0	0.46185	1	16880	16880		49.527	21.898	1	73882000	+		21684	17126	13717	13795	20831	20831					-0.1364274998925339
NDFEFHVY	8	Unmodified	_NDFEFHVY_					0	0	0		nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-5|BLTP1	nc|ENSG00000138688|Q2LD37-5|BLTP1	MULTI-MSMS	HCT116MG_D190212_S3	3	535.7327880859375	2	535.732532	1069.45051	0.56326	0.00030176	0.10184	5.4558E-05	0.6651	0.00035632	535.7325132543714	49.142	0.26511	48.826	48.657	48.922	-0.31596					9	4	3	0	0	0	0.2477	1	18515	18515		64.236	30.134	1	8262800			21685	3578	13718	13796	20832	20832					-0.08143682378886297
NDFEFHVY	8	Unmodified	_NDFEFHVY_					0	0	0		nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-5|BLTP1	nc|ENSG00000138688|Q2LD37-5|BLTP1	MULTI-MSMS	HCT116MG_D190212_S4	4	535.7328491210938	2	535.732532	1069.45051	0.27663	0.0001482	0.17803	9.5375E-05	0.45466	0.00024358	535.7327002614726	49.224	0.20736	48.859	48.711	48.918	-0.365					5	3	2	0	0	0	0.48901	1	18267	18267		42.095	21.641	1	3339300			21686	3578	13718	13796	20833	20833					-0.08143682378886297
NDFSDECETCH	11	Unmodified	_NDFSDECETCH_					0	0	0			REV__ENSG00000131116|ENST00000300811|ZNF428	REV__ENSG00000131116|ENST00000300811|ZNF428	MSMS	HCT116MG_D190212_S3	3	433.9373779296875	3	433.813265	1298.41797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.761	1	13.836	13.336	14.336	0.074899								0	0	0	0.96157	1	4385	4385		0.073264	0	1		+		21687	11957	13719	13797	20834	20834					-0.21930625626373512
NDFTASYQL	9	Unmodified	_NDFTASYQL_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MSMS	HCT116MG_D190212_S4	4	529.744873046875	2	529.743096	1057.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.554	1	43.18	42.68	43.68	-0.37433								0	0	0	0.50556	1	16014	16014		28.487	3.0875	1		+		21688	13325	13720	13798	20835	20835					-0.05479717070033985
NDGPHSALY	9	Unmodified	_NDGPHSALY_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	HCT116MG_D190212_S2	2	487.2874450683594	2	487.222331	972.430109	0.1779	8.6676E-05	0.047482	2.3134E-05	0.22538	0.00010981	487.2222560141697	29.051	0.25699	28.735	28.606	28.863	-0.31613					7	4	2	0	0	0	0.0077497	2	10617	10617;10640		118.89	75.036	1	24817000			21689	1082	13721	13799	20836;20837	20836					-0.05720853038712903
NDMEDDSMD	9	Unmodified	_NDMEDDSMD_					0	0	0		ENST00000560974.3_1_15:69126737-69127085:+|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000560974.3_1_15:69126737-69127085:+|nuORF	ENST00000560974.3_1_15:69126737-69127085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	536.16552734375	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5483	1	1.2837	0.78374	1.7837	-0.26456								0	0	0	0.77012	1	469	469		0.45834	0	1				21690	812	13722	13800	20838	20838					-0.21549077329086685
NDMYTIFIRRF	11	Unmodified	_NDMYTIFIRRF_					0	0	0			REV__KCNE2|p.E35Kfs*22|1|0.17|ENSG00000159197|chr21:34370578-34370579|-/AA|frameshift_variant	REV__KCNE2|p.E35Kfs*22|1|0.17|ENSG00000159197|chr21:34370578-34370579|-/AA|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	738.373779296875	2	738.376829	1474.7391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.182	1	39.182	38.682	39.682	0								0	0	0	0.95686	1	14692	14692		2.7352	0.23671	1		+		21691	12797	13723	13801	20839	20839					0.02072464536854568
NDNFAEMD	8	Unmodified	_NDNFAEMD_					0	0	0			REV__ENST00000494395.1_3_10:33197353-33200489:-|nuORF	REV__ENST00000494395.1_3_10:33197353-33200489:-|nuORF	MSMS	HCT116MG_D190212_S1	1	478.1778564453125	2	478.176732	954.338911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3957	1	2.3957	1.8957	2.8957	0								0	0	0	0.8837	1	725	725		0.6015	0.14316	1		+		21692	16075	13724	13802	20840	20840					-0.1400848479834167
NDNGNGKN	8	Unmodified	_NDNGNGKN_					0	0	0		BNIP3L|p.L57Wfs*69|1|0.14|ENSG00000104765|chr8:26391305-26391305|G/-|frameshift_variant;nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	BNIP3L|p.L57Wfs*69|1|0.14|ENSG00000104765|chr8:26391305-26391305|G/-|frameshift_variant	BNIP3L|p.L57Wfs*69|1|0.14|ENSG00000104765|chr8:26391305-26391305|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	832.3557739257812	1	832.354384	831.347108	0.75604	0.00062929	-0.054081	-4.5014E-05	0.70196	0.00058428	832.354202645308	34.412	0.20806	34.118	33.975	34.184	-0.2942					6	3	2	0	0	0	0.85329	1	12679	12679		4.756	1.1595	1	4103800			21693	271	13725	13803	20841	20841					-0.07531169766696166
NDNGNGKN	8	Unmodified	_NDNGNGKN_					0	0	0		BNIP3L|p.L57Wfs*69|1|0.14|ENSG00000104765|chr8:26391305-26391305|G/-|frameshift_variant;nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	BNIP3L|p.L57Wfs*69|1|0.14|ENSG00000104765|chr8:26391305-26391305|G/-|frameshift_variant	BNIP3L|p.L57Wfs*69|1|0.14|ENSG00000104765|chr8:26391305-26391305|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	832.354384	831.347108	0.84172	0.00070061	-0.21866	-0.000182	0.62306	0.00051861	832.354183394143	34.221	0.25949	34.046	33.916	34.175	-0.17512	-0.036004	-6.0323E-05	NaN	4.756	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37274000			21694	271	13725	13803							-0.07531169766696166
NDRFLWRHF	9	Unmodified	_NDRFLWRHF_					0	0	0		ENST00000380736.5_1_X:11157631-11160408:-|nuORF	ENST00000380736.5_1_X:11157631-11160408:-|nuORF	ENST00000380736.5_1_X:11157631-11160408:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.88824462890625	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8131	1	2.8131	2.3131	3.3131	0								0	0	0	0.77019	1	846	846		0.20686	0.083992	1				21695	7568	13726	13804	20842	20842					0.00853863442898728
NDVEAYEY	8	Unmodified	_NDVEAYEY_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	HCT116MG_D190212_S3	3	1002.405029296875	1	1002.40508	1001.39781	0.5787	0.00058009	0.029894	2.9965E-05	0.60859	0.00061006	1002.4048934945155	35.023	0.4152	34.726	34.544	34.959	-0.29707					15	7	3	0	0	0	0.11121	1	12919	12919		92.491	44.146	1	25751000			21696	911	13727	13805	20843	20843					-0.10283685232377593
NDVEAYEY	8	Unmodified	_NDVEAYEY_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	HCT116MG_D190212_S3	3	501.7063293457031	2	501.70618	1001.39781	0.45067	0.00022611	0.072549	3.6398E-05	0.52322	0.0002625	501.7061325915834	35.064	0.25904	34.767	34.596	34.855	-0.29707					7	4	2	0	0	0	0.63727	1	12940	12940		29.082	13.234	1	5923600			21697	911	13727	13805	20844	20844					-0.10283685232377593
NDVEAYEY	8	Unmodified	_NDVEAYEY_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	HCT116MG_D190212_S4	4	1002.4049072265625	1	1002.40508	1001.39781	0.62594	0.00062744	-0.060386	-6.0531E-05	0.56555	0.00056691	1002.4049516502632	35.058	0.31145	34.672	34.49	34.802	-0.38606					9	5	2	0	0	0	0.20876	1	12832	12832		71.922	29.828	1	9145300			21698	911	13727	13805	20845	20845					-0.10283685232377593
NDVEAYEY	8	Unmodified	_NDVEAYEY_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MSMS	HCT116MG_D190212_S4	4	501.70550537109375	2	501.70618	1001.39781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.103	1	34.717	34.217	35.217	-0.38606								0	0	0	0.8837	1	12844	12844		13.906	5.9959	1				21699	911	13727	13805	20846	20846					-0.10283685232377593
NDVEAYEY	8	Unmodified	_NDVEAYEY_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1002.40508	1001.39781	0.70185	0.00070354	-0.13108	-0.00013139	0.57078	0.00057215	1002.4052144751022	34.79	0.20756	34.631	34.502	34.709	-0.15834	-0.045115	-0.00012286	NaN	92.491	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16457000			21700	911	13727	13805							-0.10283685232377593
NDVRREWGP	9	Unmodified	_NDVRREWGP_					0	0	0			REV__ITCH-PIGU|2|fusion	REV__ITCH-PIGU|2|fusion	MSMS	HCT116MG_D190212_S2	2	376.8556823730469	3	376.856345	1127.5472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.638	1	14.318	13.818	14.818	-0.31952								0	0	0	0.76954	1	4807	4807		2.4985	0.59211	1		+		21701	10841	13728	13806	20847	20847					-0.011466950991007252
NDYYYFDEFYM	11	Unmodified	_NDYYYFDEFYM_					0	0	0		tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	785.299560546875	2	785.297575	1568.5806	0.87588	0.00068783	1.0566	0.00082974	1.9325	0.0015176	785.2982230848627	26.069	0.41647	25.779	25.568	25.984	-0.29023					16	7	3	0	0	0	0.74191	1	9265	9265		0.26902	0.26902	1	5481900			21702	18358	13729	13807	20848	20848					-0.18094918952738226
NEADRTLIY	9	Unmodified	_NEADRTLIY_					0	0	0		ENST00000548878.6_1_12:110874873-110883331:-|nuORF;ENSG00000111229|ENST00000228825|ARPC3	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	547.7778930664062	2	547.77747	1093.54039	0.21911	0.00012002	0.1046	5.7295E-05	0.3237	0.00017732	547.7774688624255	37.82	0.25763	37.727	37.599	37.857	-0.09301					7	4	2	0	0	0	0.24534	1	14226	14226		36.506	7.4246	1	18202000			21703	8741	13730	13808	20849	20849					-0.0026405277030789875
NEADRTLIY	9	Unmodified	_NEADRTLIY_					0	0	0		ENST00000548878.6_1_12:110874873-110883331:-|nuORF;ENSG00000111229|ENST00000228825|ARPC3	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	547.77747	1093.54039	0.50695	0.00027769	0.075992	4.1627E-05	0.58294	0.00031932	548.2793128918145	37.759	0.15627	37.759	37.655	37.811	0	0.0072317	0.00012143	NaN	36.506	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2103800			21704	8741	13730	13808							-0.0026405277030789875
NEADRTLIY	9	Unmodified	_NEADRTLIY_					0	0	0		ENST00000548878.6_1_12:110874873-110883331:-|nuORF;ENSG00000111229|ENST00000228825|ARPC3	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	547.77747	1093.54039	0.50811	0.00027833	-0.80567	-0.00044133	-0.29756	-0.000163	547.7772253681047	38.07	0.19448	37.769	37.691	37.885	-0.30137	0.017159	-0.00084448	NaN	36.506	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3322600			21705	8741	13730	13808							-0.0026405277030789875
NEAHVSKAQ	9	Unmodified	_NEAHVSKAQ_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	HCT116MG_D190212_S1	1	492.2491760253906	2	492.24888	982.483208	0.3283	0.0001616	0.036978	1.8203E-05	0.36527	0.00017981	492.24891876481473	15.903	0.46884	15.903	15.744	16.213	0					13	8	2	0	0	0	0.17622	1	5328	5328		43.772	7.6454	1	2239000	+		21706	12913	13731	13809	20850	20850					-0.008734752560371817
NEAHVSKAQ	9	Unmodified	_NEAHVSKAQ_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	HCT116MG_D190212_S2	2	492.249755859375	2	492.24888	982.483208	0.22411	0.00011032	0.25236	0.00012422	0.47647	0.00023454	492.2489700863817	16.164	0.78252	15.83	15.637	16.42	-0.33451					34	14	4	0	0	0	0.39784	1	5634	5634		22.736	0	1	18556000	+		21707	12913	13731	13809	20851	20851					-0.008734752560371817
NEAIMHQY	8	Unmodified	_NEAIMHQY_					0	0	0		FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant;FAM111B|p.N499Tfs*10|1|0.11|ENSG00000189057|chr11:59125589-59125589|A/-|frameshift_variant;ENSG00000189057|ENST00000343597|FAM111B;nc|ENSG00000189057|Q6SJ93-2|FAM111B	FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant	FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	503.22698974609375	2	503.226559	1004.43857	0.21911	0.00011026	0.3036	0.00015278	0.52272	0.00026304	503.226590906354	29.977	0.25804	29.693	29.564	29.822	-0.28453					8	4	2	0	0	0	0.060005	1	11018	11018		112.59	66.572	1	24125000			21708	6016	13732	13810	20852	20852					-0.06347622393741403
NEAIMHQY	8	Unmodified	_NEAIMHQY_					0	0	0		FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant;FAM111B|p.N499Tfs*10|1|0.11|ENSG00000189057|chr11:59125589-59125589|A/-|frameshift_variant;ENSG00000189057|ENST00000343597|FAM111B;nc|ENSG00000189057|Q6SJ93-2|FAM111B	FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant	FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	503.22650146484375	2	503.226559	1004.43857	0.5033	0.00025327	-0.31431	-0.00015817	0.18899	9.5103E-05	503.22634229849206	30.085	0.26371	29.835	29.65	29.913	-0.24946					12	4	3	0	0	0	0.095352	1	10953	10953		96.111	43.843	1	15836000			21709	6016	13732	13810	20853	20853					-0.06347622393741403
NEAIMHQY	8	Unmodified	_NEAIMHQY_					0	0	0		FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant;FAM111B|p.N499Tfs*10|1|0.11|ENSG00000189057|chr11:59125589-59125589|A/-|frameshift_variant;ENSG00000189057|ENST00000343597|FAM111B;nc|ENSG00000189057|Q6SJ93-2|FAM111B	FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant	FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	503.226559	1004.43857	0.26776	0.00013474	-0.030294	-1.5245E-05	0.23747	0.0001195	503.2264359204455	30.227	0.15595	29.87	29.753	29.909	-0.3571	0.070708	9.4016E-05	NaN	112.59	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3311100			21710	6016	13732	13810							-0.06347622393741403
NEALIEKL	8	Unmodified	_NEALIEKL_					0	0	0		SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant	SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	465.2686767578125	2	465.26875	928.522947	-0.16882	-7.8546E-05	0.16146	7.5123E-05	-0.0073554	-3.4223E-06	465.2689463086893	43.144	0.46254	43.071	42.84	43.303	-0.073376					13	8	2	0	0	0	0.12475	1	16385	16385		89.401	6.8714	1	19718000			21711	1734	13733	13811	20854	20854					0.05582651694669494
NEALIEKL	8	Unmodified	_NEALIEKL_					0	0	0		SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant	SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	465.26875	928.522947	0.13505	6.2835E-05	-0.0039047	-1.8167E-06	0.13115	6.1018E-05	465.2688256376999	43.238	0.20896	43.238	43.056	43.264	0	0.090158	-1.5553E-05	NaN	89.401	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6503100			21712	1734	13733	13811							0.05582651694669494
NEALIEKL	8	Unmodified	_NEALIEKL_					0	0	0		SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant	SRP54|p.D313N|1|0.12|ENSG00000100883|chr14:35014794-35014794|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	465.26875	928.522947	0.37931	0.00017648	-0.10198	-4.745E-05	0.27732	0.00012903	465.2687770462108	43.441	0.25737	43.135	42.983	43.24	-0.30541	-0.013033	-0.00010682	NaN	89.401	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3169700			21713	1734	13733	13811							0.05582651694669494
NEAREMGVIAA	11	Unmodified	_NEAREMGVIAA_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.V523Wfs*4|1|0.28|ENSG00000009307|chr1:114726284-114726284|C/-|frameshift_variant;CSDE1|p.D560Gfs*6|1|0.3|ENSG00000009307|chr1:114725295-114725296|-/C|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	HCT116MG_D190212_S3	3	580.7902221679688	2	580.790055	1159.56556	0.48221	0.00028006	0.33204	0.00019285	0.81426	0.00047291	580.7898693414927	35.075	0.36314	34.778	34.596	34.959	-0.29707					8	6	2	0	0	0	0.61097	1	12949	12949		34.222	10.201	1	4540800			21714	866	13734	13812	20855	20855					-0.00784321239370911
NEATIQVSQA	10	Unmodified	_NEATIQVSQA_					0	0	0			REV__JADE2|p.P642Hfs*26|1|0.27|ENSG00000043143|chr5:134578865-134578865|G/-|frameshift_variant	REV__JADE2|p.P642Hfs*26|1|0.27|ENSG00000043143|chr5:134578865-134578865|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	530.7673950195312	2	530.767103	1059.51965	0.15755	8.3623E-05	0.56176	0.00029816	0.71931	0.00038178	530.7671690804424	17.426	0.46829	17.508	17.43	17.898	0.081358					11	8	2	0	0	0	0.68309	1	5881	5881		31.268	12.011	1	2366100	+		21715	10595	13735	13813	20856	20856					-0.007726431499804676
NEATLKEPS	9	Unmodified	_NEATLKEPS_					0	0	0			REV__nc|ENSG00000118369|Q9P2H5-2|USP35	REV__nc|ENSG00000118369|Q9P2H5-2|USP35	MULTI-MSMS	HCT116MG_D190212_S2	2	989.5046997070312	1	988.494566	987.48729	0.55642	0.00055002	1.5907	0.0015724	2.1471	0.0021224	988.4940314757796	30.395	0.77243	30.11	29.873	30.646	-0.28453					46	14	4	0	0	0	0.16306	1	11235	11235		45.7	7.7256	1	289700000	+		21716	11634	13736	13814	20857	20857					-0.0069543055299163825
NEATLKEPS	9	Unmodified	_NEATLKEPS_					0	0	0			REV__nc|ENSG00000118369|Q9P2H5-2|USP35	REV__nc|ENSG00000118369|Q9P2H5-2|USP35	MULTI-MSMS	HCT116MG_D190212_S3	3	989.5011596679688	1	988.494566	987.48729	0.6733	0.00066555	1.9571	0.0019346	2.6304	0.0026001	988.4942152901493	30.493	0.75468	30.243	30.069	30.824	-0.24946					59	27	3	0	0	0	0.21258	1	11128	11128		39.95	1.7741	1	45271000	+		21717	11634	13736	13814	20858	20858					-0.0069543055299163825
NEAVFIAH	8	Unmodified	_NEAVFIAH_					0	0	0		RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant;ENSG00000146587|ENST00000396912|RBAK	RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant	RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	450.7325134277344	2	450.732335	899.450116	0.12584	5.6719E-05	0.158	7.1218E-05	0.28384	0.00012794	450.73232817972183	34.038	0.2605	33.744	33.611	33.871	-0.29419					11	4	3	0	0	0	0.10511	1	12517	12517		93.883	46.963	1	13849000			21718	3955	13737	13815	20859	20859					-0.003630573080954491
NEAVFIAH	8	Unmodified	_NEAVFIAH_					0	0	0		RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant;ENSG00000146587|ENST00000396912|RBAK	RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant	RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	450.73223876953125	2	450.732335	899.450116	0.35425	0.00015967	-0.021712	-9.7863E-06	0.33254	0.00014988	450.73224467861473	34.187	0.25977	33.802	33.62	33.88	-0.38558					7	4	2	0	0	0	0.21411	1	12476	12476		70.865	38.748	1	6173900			21719	3955	13737	13815	20860	20860					-0.003630573080954491
NEAVFIAH	8	Unmodified	_NEAVFIAH_					0	0	0		RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant;ENSG00000146587|ENST00000396912|RBAK	RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant	RBAK|p.F520Hfs*5|1|0.23|ENSG00000146587|chr7:5065012-5065013|-/TCACA|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	450.732335	899.450116	0.12717	5.7319E-05	0.50329	0.00022685	0.63046	0.00028417	450.7323056562885	33.93	0.15557	33.755	33.657	33.812	-0.17512	-0.012124	0.0003303	NaN	93.883	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6743800			21720	3955	13737	13815							-0.003630573080954491
NECEKVFYQS	10	Unmodified	_NECEKVFYQS_					0	0	0		ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	MULTI-MSMS	HCT116MG_D190212_S1	1	623.7744140625	2	623.774071	1245.53359	0.75926	0.00047361	0.15673	9.7765E-05	0.916	0.00057137	623.7740390704839	45.891	0.26138	45.891	45.765	46.027	0					10	4	3	0	0	0	0.57664	1	17415	17415		29.841	10.479	1	24150000			21721	5373	13738	13816	20861	20861					-0.07935733713202353
NECEKVFYQS	10	Unmodified	_NECEKVFYQS_					0	0	0		ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	MULTI-MSMS	HCT116MG_D190212_S2	2	623.7740478515625	2	623.774071	1245.53359	0.51255	0.00031971	-0.0022317	-1.3921E-06	0.51032	0.00031832	623.7741388426203	45.942	0.35878	45.84	45.71	46.068	-0.1014					17	6	4	0	0	0	0.33238	1	17489	17489		47.594	16.326	1	89971000			21722	5373	13738	13816	20862	20862					-0.07935733713202353
NECEKVFYQS	10	Unmodified	_NECEKVFYQS_					0	0	0		ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	MULTI-MSMS	HCT116MG_D190212_S3	3	623.7740478515625	2	623.774071	1245.53359	0.66177	0.00041279	-0.13286	-8.2878E-05	0.5289	0.00032992	623.773787715381	46.181	0.37577	45.869	45.751	46.126	-0.31237					21	12	2	0	0	0	0.37752	1	17312	17312		43.772	18.781	1	24553000			21723	5373	13738	13816	20863	20863					-0.07935733713202353
NECEKVFYQS	10	Unmodified	_NECEKVFYQS_					0	0	0		ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	ENSG00000175322|ENST00000590202|ZNF519	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	623.774071	1245.53359	0.75926	0.00047361	0.15673	9.7765E-05	0.916	0.00057137	623.7740390704839	45.891	0.26138	45.891	45.765	46.027	0	0.024371	0.00016389	NaN	47.594	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24150000			21724	5373	13738	13816							-0.07935733713202353
NECFLQHK	8	Carbamidomethyl (C)	_NEC(Carbamidomethyl (C))FLQHK_	NEC(1)FLQHK		NEC(73)FLQHK		0	1	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	538.2536010742188	2	538.253108	1074.49166	0.43752	0.0002355	0.21541	0.00011595	0.65294	0.00035145	538.2531429588266	26.04	0.20818	25.75	25.568	25.776	-0.29022					5	3	2	0	0	0	0.20346	1	9264	9264		72.968	44.481	1	5946800		+	21725	554	13739	13817	20864	20864	3				-0.04260244611077724
NECGERCCGC	10	Unmodified	_NECGERCCGC_					0	0	0			REV__ENSG00000144655|ENST00000273153|CSRNP1	REV__ENSG00000144655|ENST00000273153|CSRNP1	MSMS	HCT116MG_D190212_S1	1	537.317626953125	2	537.167004	1072.31945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.853	1	52.853	52.353	53.353	0								0	0	0	0.96453	1	20226	20226		1.4819	1.4819	1		+		21726	12425	13740	13818	20865	20865					-0.21381223676758054
NECMVPNF	8	Unmodified	_NECMVPNF_					0	0	0			REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	MSMS	HCT116MG_D190212_S4	4	476.913818359375	2	477.196413	952.378273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.345	1	31.966	31.466	32.466	-0.37924								0	0	0	0.8837	1	11777	11777		4.756	0.42677	1		+		21727	12080	13741	13819	20866	20866					-0.09982056048477261
NEDEPIRVSY	10	Unmodified	_NEDEPIRVSY_					0	0	0		nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5;nc|ENSG00000068308|Q96G74-4|OTUD5	nc|ENSG00000068308|Q96G74-2|OTUD5	nc|ENSG00000068308|Q96G74-2|OTUD5	MULTI-MSMS	HCT116MG_D190212_S2	2	611.290771484375	2	611.290942	1220.56733	0.61887	0.00037831	-0.53909	-0.00032954	0.079782	4.877E-05	611.2904859017926	36.536	0.36311	36.421	36.187	36.55	-0.11478					10	6	3	0	0	0	0.021186	1	13689	13689		118.21	50.371	1	34203000			21728	1200	13742	13820	20867	20867					-0.03412988949799001
NEDEPIRVSY	10	Unmodified	_NEDEPIRVSY_					0	0	0		nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5;nc|ENSG00000068308|Q96G74-4|OTUD5	nc|ENSG00000068308|Q96G74-2|OTUD5	nc|ENSG00000068308|Q96G74-2|OTUD5	MULTI-MSMS	HCT116MG_D190212_S3	3	611.2919921875	2	611.290942	1220.56733	0.36002	0.00022008	0.35935	0.00021967	0.71937	0.00043974	611.2912931580739	36.68	0.31202	36.379	36.249	36.561	-0.30113					9	5	2	0	0	0	0.011089	1	13591	13591		142.92	75.081	1	4277600			21729	1200	13742	13820	20868	20868					-0.03412988949799001
NEDFSFHY	8	Unmodified	_NEDFSFHY_					0	0	0		ENST00000555522.1_1_14:75469672-75471687:+|nuORF;ENSG00000119718|ENST00000266126|EIF2B2	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7144165039062	2	529.714339	1057.41412	0.66371	0.00035158	0.11503	6.0933E-05	0.77874	0.00041251	529.7141753336197	44.75	0.31148	44.665	44.535	44.846	-0.084797					10	5	3	0	0	0	0.41924	1	17034	17034		48.346	25.197	1	24407000			21730	2661	13743	13821	20869	20869					-0.11228559275605221
NEDFSFHY	8	Unmodified	_NEDFSFHY_					0	0	0		ENST00000555522.1_1_14:75469672-75471687:+|nuORF;ENSG00000119718|ENST00000266126|EIF2B2	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.7147827148438	2	529.714339	1057.41412	0.61313	0.00032478	-0.29288	-0.00015514	0.32025	0.00016964	529.7141700623015	44.995	0.25288	44.685	44.532	44.785	-0.30927					11	4	3	0	0	0	0.057785	1	16836	16836		114.94	55.149	1	9224900			21731	2661	13743	13821	20870	20870					-0.11228559275605221
NEDFSFHY	8	Unmodified	_NEDFSFHY_					0	0	0		ENST00000555522.1_1_14:75469672-75471687:+|nuORF;ENSG00000119718|ENST00000266126|EIF2B2	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	529.71435546875	2	529.714339	1057.41412	0.47544	0.00025185	-0.77648	-0.00041131	-0.30103	-0.00015946	529.7140386560848	45.028	0.14939	44.655	44.585	44.735	-0.37326					5	3	2	0	0	0	0.31873	1	16627	16627		57.471	23.284	1	2234600			21732	2661	13743	13821	20871	20871					-0.11228559275605221
NEDIGAHLP	9	Unmodified	_NEDIGAHLP_					0	0	0			REV__ENSG00000153498|ENST00000283550|SPACA7	REV__ENSG00000153498|ENST00000283550|SPACA7	MSMS	HCT116MG_D190212_S3	3	482.7580871582031	2	483.237981	964.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.783	1	35.483	34.983	35.983	-0.29982								0	0	0	0.58443	1	13199	13199		24.674	0.65332	1		+		21733	12655	13744	13822	20872	20872					-0.022242800046228695
NEDLIVDFM	9	Unmodified	_NEDLIVDFM_					0	0	0			REV__nc|ENSG00000283228|O00305-2|CACNB4	REV__nc|ENSG00000283228|O00305-2|CACNB4	MSMS	HCT116MG_D190212_S3	3	548.2573852539062	2	548.254982	1094.49541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.754	1	35.455	34.955	35.955	-0.29922								0	0	0	0.1323	1	13188	13188		52.268	10.313	1		+		21734	13716	13745	13823	20873	20873					-0.04805619627882152
NEDLRSWTA	9	Unmodified	_NEDLRSWTA_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENSG00000204592|ENST00000376630|HLA-E;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S1	1	546.2596435546875	2	546.259445	1090.50434	0.090047	4.9189E-05	0.080742	4.4106E-05	0.17079	9.3295E-05	546.2594235842873	37.942	0.36384	37.942	37.759	38.123	0					19	6	4	0	0	0	0.0035894	1	14179	14179		176.43	118.71	1	128000000			21735	6396;6522;6347	13746	13824	20874	20874					-0.037295099471975846
NEDLRSWTA	9	Unmodified	_NEDLRSWTA_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENSG00000204592|ENST00000376630|HLA-E;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S1	1	1091.51220703125	1	1091.51161	1090.50434	0.16322	0.00017816	0.43257	0.00047215	0.59579	0.00065031	1091.511734167182	37.942	0.15576	37.942	37.863	38.019	0					4	2	2	0	0	0	0.0035417	2	14215	14206;14215		171.46	108.89	1	10468000			21736	6396;6522;6347	13746	13824	20875;20876	20876					-0.037295099471975846
NEDLRSWTA	9	Unmodified	_NEDLRSWTA_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENSG00000204592|ENST00000376630|HLA-E;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2593994140625	2	546.259445	1090.50434	0.23632	0.00012909	0.17215	9.4039E-05	0.40847	0.00022313	546.2595277189293	37.975	0.51659	37.882	37.702	38.219	-0.09301					29	9	4	0	0	0	0.0035136	1	14236	14236		168.54	110.82	1	1055299999.9999999			21737	6396;6522;6347	13746	13824	20877	20877					-0.037295099471975846
NEDLRSWTA	9	Unmodified	_NEDLRSWTA_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENSG00000204592|ENST00000376630|HLA-E;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S2	2	1091.5118408203125	1	1091.51161	1090.50434	0.37185	0.00040588	0.044505	4.8578E-05	0.41636	0.00045446	1091.5116905286131	38.012	0.31012	37.919	37.753	38.063	-0.093006					13	5	3	0	0	0	0.0034268	1	14263	14263		179.28	116.71	1	65237000			21738	6396;6522;6347	13746	13824	20878	20878					-0.037295099471975846
NEDLRSWTA	9	Unmodified	_NEDLRSWTA_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENSG00000204592|ENST00000376630|HLA-E;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S3	3	546.2595825195312	2	546.259445	1090.50434	0.46272	0.00025277	-0.053936	-2.9463E-05	0.40879	0.0002233	546.2594184288631	38.212	0.81774	37.911	37.691	38.508	-0.30137					45	15	5	0	0	0	0.0035894	1	14128	14128		176.43	118.71	1	538680000			21739	6396;6522;6347	13746	13824	20879	20879					-0.037295099471975846
NEDLRSWTA	9	Unmodified	_NEDLRSWTA_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENSG00000204592|ENST00000376630|HLA-E;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S3	3	1091.5120849609375	1	1091.51161	1090.50434	0.41937	0.00045775	-0.11624	-0.00012688	0.30313	0.00033087	1091.5114821447698	38.212	0.31084	37.911	37.729	38.04	-0.30137					10	5	2	0	0	0	0.0034268	1	14152	14152		179.28	116.71	1	17602000			21740	6396;6522;6347	13746	13824	20880	20880					-0.037295099471975846
NEDLRSWTA	9	Unmodified	_NEDLRSWTA_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENSG00000204592|ENST00000376630|HLA-E;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2595825195312	2	546.259445	1090.50434	0.32292	0.0001764	0.20238	0.00011055	0.5253	0.00028695	546.2595268504805	38.364	0.62635	37.981	37.76	38.387	-0.38283					37	12	4	0	0	0	0.0035136	1	14021	14021		168.54	110.82	1	141300000			21741	6396;6522;6347	13746	13824	20881	20881					-0.037295099471975846
NEDLRSWTA	9	Unmodified	_NEDLRSWTA_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000204632|ENST00000360323|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;nc|ENSG00000204632|P17693-4|HLA-G;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000204525|ENST00000376228|HLA-C;nc|ENSG00000206341|P01893|HLA-H;ENSG00000204592|ENST00000376630|HLA-E;HLA-C|p.A269Gfs*66|1|0.07|ENSG00000204525|chr6:31270299-31270300|-/C|frameshift_variant;HLA-G|p.A160V|1|0.18|ENSG00000204632|chr6:29828678-29828678|C/T|missense_variant;HLA-E|p.V157M|1|0.29|ENSG00000204592|chr6:30490374-30490374|G/A|missense_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A;HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S4	4	1091.5106201171875	1	1091.51161	1090.50434	0.34792	0.00037976	-0.16334	-0.00017829	0.18458	0.00020147	1091.5115636443124	38.364	0.3292	37.981	37.812	38.141	-0.38283					8	6	2	0	0	0	0.0034669	1	14049	14049		163.69	109.85	1	4318800			21742	6396;6522;6347	13746	13824	20882	20882					-0.037295099471975846
NEDNGIIKA	9	Unmodified	_NEDNGIIKA_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	HCT116MG_D190212_S3	3	487.2512512207031	2	487.251089	972.487624	0.37764	0.00018401	-0.30855	-0.00015034	0.069093	3.3666E-05	487.25086556723335	28.651	0.31226	28.445	28.281	28.593	-0.20593					8	5	2	0	0	0	0.17622	1	10396	10396		43.772	7.2662	1	6079300			21743	5331	13747	13825	20883	20883					0.00027989166869701876
NEDPKDRPSA	10	Unmodified	_NEDPKDRPSA_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	HCT116MG_D190212_S1	1	564.767822265625	2	564.767634	1127.52072	0.4137	0.00023365	0.038679	2.1845E-05	0.45238	0.00025549	564.767617453002	15.301	0.31311	15.301	15.171	15.484	0					12	5	4	0	0	0	0.03125	1	5095	5095		94.909	47.314	1	23050000			21744	4982	13748	13826	20884	20884					-0.037944287810887545
NEDPKDRPSA	10	Unmodified	_NEDPKDRPSA_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	HCT116MG_D190212_S1	1	376.8473815917969	3	376.847515	1127.52072	-0.076562	-2.8852E-05	-0.024234	-9.1325E-06	-0.1008	-3.7985E-05	376.8474195971259	15.301	0.26097	15.301	15.171	15.432	0					8	4	3	0	0	0	0.53697	1	5098	5098		32.616	11.745	1	2498700			21745	4982	13748	13826	20885	20885					-0.037944287810887545
NEDPKDRPSA	10	Unmodified	_NEDPKDRPSA_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	HCT116MG_D190212_S2	2	564.7684326171875	2	564.767634	1127.52072	0.31638	0.00017868	0.34844	0.00019679	0.66482	0.00037547	564.7677968767428	11.936	0.21824	11.646	11.533	11.751	-0.28953					19	8	4	0	0	0	0.67939	1	3865	3865		30.703	17.196	1	980540			21746	4982	13748	13826	20886	20886					-0.037944287810887545
NEDPKDRPSA	10	Unmodified	_NEDPKDRPSA_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	HCT116MG_D190212_S2	2	564.767333984375	2	564.767634	1127.52072	0.31864	0.00017996	0.058289	3.292E-05	0.37693	0.00021288	564.7676582727786	15.424	0.67764	15.097	14.915	15.592	-0.32684					35	12	4	0	0	0	0.009111	3	5106	5106;5157;5255		173.14	109.18	1	175300000			21747	4982	13748	13826	20887;20888;20889	20887					-0.037944287810887545
NEDPKDRPSA	10	Unmodified	_NEDPKDRPSA_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	HCT116MG_D190212_S2	2	376.8472900390625	3	376.847515	1127.52072	-0.31136	-0.00011733	-0.0014178	-5.3428E-07	-0.31277	-0.00011787	376.84752683324916	15.424	0.46897	15.097	14.967	15.436	-0.32684					19	8	4	0	0	0	0.026206	1	5125	5125		109.15	79.865	1	17931000			21748	4982	13748	13826	20890	20890					-0.037944287810887545
NEDPKDRPSA	10	Unmodified	_NEDPKDRPSA_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MSMS	HCT116MG_D190212_S3	3	564.767822265625	2	564.767634	1127.52072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.494	1	14.574	14.074	15.074	0.079683								0	0	0	0.90475	1	4670	4670		16.566	3.5234	1				21749	4982	13748	13826	20891	20891					-0.037944287810887545
NEDRISTTF	9	Unmodified	_NEDRISTTF_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	HCT116MG_D190212_S1	1	541.7593383789062	2	541.759278	1081.504	0.62747	0.00033994	0.3061	0.00016583	0.93357	0.00050577	541.7589613035468	35.967	0.2606	35.967	35.837	36.098	0					8	4	2	0	0	0	0.043159	1	13423	13423		78.06	43.659	1	11875000			21750	3917	13749	13827	20892	20892					-0.03348929667072298
NEDRISTTF	9	Unmodified	_NEDRISTTF_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7594604492188	2	541.759278	1081.504	0.84916	0.00046004	-0.34222	-0.0001854	0.50694	0.00027464	541.7588845030866	36.035	0.31037	35.907	35.761	36.071	-0.12799					11	5	3	0	0	0	0.012343	1	13478	13478		107.56	63.705	1	44572000			21751	3917	13749	13827	20893	20893					-0.03348929667072298
NEDRISTTF	9	Unmodified	_NEDRISTTF_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7593994140625	2	541.759278	1081.504	0.10392	5.63E-05	0.40086	0.00021717	0.50478	0.00027347	541.7592816916725	36.212	0.36392	35.912	35.729	36.093	-0.30042					13	6	3	0	0	0	0.0096585	1	13384	13384		114.19	76.212	1	20292000			21752	3917	13749	13827	20894	20894					-0.03348929667072298
NEDRISTTF	9	Unmodified	_NEDRISTTF_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	HCT116MG_D190212_S4	4	541.7595825195312	2	541.759278	1081.504	0.60349	0.00032695	0.12058	6.5328E-05	0.72408	0.00039228	541.7593133681225	36.33	0.24879	35.944	35.773	36.022	-0.38558					6	4	2	0	0	0	0.043159	1	13316	13316		78.06	40.086	1	7959200			21753	3917	13749	13827	20895	20895					-0.03348929667072298
NEDRSWVF	8	Unmodified	_NEDRSWVF_					0	0	0		ENST00000534603.5_1_11:770899-773566:-|nuORF;ENST00000530209.5_1_11:770899-772585:-|nuORF;nc|ENSG00000177225|Q8NB37-4|GATD1;ENST00000532320.5_1_11:771189-774104:-|nuORF;nc|ENSG00000177225|Q8NB37-3|GATD1;ENSG00000177225|ENST00000319863|GATD1;nc|ENSG00000177225|Q8NB37-2|GATD1	ENST00000534603.5_1_11:770899-773566:-|nuORF	ENST00000534603.5_1_11:770899-773566:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7432861328125	2	526.743431	1051.47231	0.30151	0.00015882	-0.44573	-0.00023479	-0.14422	-7.5969E-05	526.7431460026352	50.048	0.31228	49.733	49.602	49.914	-0.31525					7	5	2	0	0	0	0.66932	1	18892	18892		26.268	5.3969	1	6255200			21754	8653	13750	13828	20896	20896					-0.05136877630343406
NEDTPFVHF	9	Unmodified	_NEDTPFVHF_					0	0	0			REV__ENST00000504384.5_1_4:76440662-76442198:+|nuORF	REV__ENST00000504384.5_1_4:76440662-76442198:+|nuORF	MSMS	HCT116MG_D190212_S4	4	553.2533569335938	2	553.251089	1104.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.901	1	44.528	44.028	45.028	-0.37326								0	0	0	0.76694	1	16546	16546		11.64	0.81637	1		+		21755	13495	13751	13829	20897	20897					-0.06044010833147695
NEDTPSLEEG	10	Unmodified	_NEDTPSLEEG_					0	0	0			REV__nc|ENSG00000196139|P42330-2|AKR1C3	REV__nc|ENSG00000196139|P42330-2|AKR1C3	MSMS	HCT116MG_D190212_S1	1	545.7305297851562	2	545.730383	1089.44621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.537	1	16.537	16.037	17.037	0								0	0	0	0.91971	1	5572	5572		11.495	0.67078	1		+		21756	14005	13752	13830	20898	20898					-0.09493236383127623
NEEAEQVR	8	Unmodified	_NEEAEQVR_					0	0	0			REV__nc|ENSG00000085831|Q5SRH9-2|TTC39A	REV__nc|ENSG00000085831|Q5SRH9-2|TTC39A	MULTI-SECPEP	HCT116MG_D190212_S2	2	487.1731872558594	2	487.73052	973.446488	0.2344	0.00011432	0.98546	0.00048064	1.2199	0.00059496	487.7304402700028	17.196	0.26052	16.847	16.665	16.925	-0.34933					7	4	2	0	0	0	0.24784	1	5780	5780		19.257	9.8739	1	3149000	+		21757	10926	13753	13831	20899	20899					-0.041297718726013954
NEEEAKKF	8	Unmodified	_NEEEAKKF_					0	0	0		WASL|p.V422Wfs*17|2|0.27|ENSG00000106299|chr7:123692431-123692431|T/-|frameshift_variant;ENSG00000106299|ENST00000223023|WASL	WASL|p.V422Wfs*17|2|0.27|ENSG00000106299|chr7:123692431-123692431|T/-|frameshift_variant	WASL|p.V422Wfs*17|2|0.27|ENSG00000106299|chr7:123692431-123692431|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	497.74615478515625	2	497.745639	993.476725	0.36956	0.00018395	0.47291	0.00023539	0.84247	0.00041934	497.74582933151675	19.595	0.25961	19.22	19.091	19.351	-0.37503					9	4	3	0	0	0	0.1893	1	6825	6825		75.761	19.584	1	16278000			21758	2068	13754	13832	20900	20900					-0.020274132074177942
NEEEIRANVA	10	Unmodified	_NEEEIRANVA_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	HCT116MG_D190212_S2	2	572.7835083007812	2	572.783284	1143.55202	0.3034	0.00017378	0.43214	0.00024753	0.73555	0.00042131	572.7833358830306	26.723	0.3128	26.37	26.137	26.45	-0.35254					8	5	2	0	0	0	0.20425	1	9711	9711		59.052	20.438	1	15801000			21759	3491	13755	13833	20901	20901					-0.014018557469853477
NEEEIRANVA	10	Unmodified	_NEEEIRANVA_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	HCT116MG_D190212_S3	3	573.2853393554688	2	572.783284	1143.55202	0.57336	0.00032841	0.40572	0.00023239	0.97909	0.0005608	572.7829335394816	26.586	0.41655	26.437	26.098	26.515	-0.14924					13	7	3	0	0	0	0.0095435	1	9557	9557		151.48	36.831	1	10937000			21760	3491	13755	13833	20902	20902					-0.014018557469853477
NEEEIRANVA	10	Unmodified	_NEEEIRANVA_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	HCT116MG_D190212_S4	4	573.2883911132812	2	572.783284	1143.55202	0.50994	0.00029209	1.1089	0.00063515	1.6188	0.00092724	572.7834421013187	26.768	0.36372	26.467	26.182	26.545	-0.30087					8	6	2	0	0	0	0.016452	2	9545	9545;9561		128.57	39.172	1	4529100			21761	3491	13755	13833	20903;20904	20903					-0.014018557469853477
NEEGFVRLY	9	Unmodified	_NEEGFVRLY_					0	0	0		ENSG00000143476|ENST00000366991|DTL;DTL|p.I387Sfs*4|1|0.34|ENSG00000143476|chr1:212080644-212080644|A/-|frameshift_variant;nc|ENSG00000143476|Q9NZJ0-2|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-MSMS	HCT116MG_D190212_S3	3	563.7803955078125	2	563.780013	1125.54547	0.5798	0.00032688	0.30208	0.0001703	0.88187	0.00049718	563.7801349370519	46.621	0.20843	46.307	46.177	46.385	-0.31405					5	3	2	0	0	0	0.20983	1	17516	17516		40.239	17.503	1	3435300			21762	3815	13756	13834	20905	20905					-0.012277489076950587
NEEPKVATA	9	Unmodified	_NEEPKVATA_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MSMS	HCT116MG_D190212_S3	3	479.7459716796875	2	479.745639	957.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.209	1	20.258	19.758	20.758	0.048107								0	0	0	0.22299	1	6976	6976		45.7	7.5484	1				21763	766	13757	13835	20906	20906					-0.003714132074264853
NEEQSQNF	8	Unmodified	_NEEQSQNF_					0	0	0			REV__ENSG00000197980|ENST00000356539|LEKR1	REV__ENSG00000197980|ENST00000356539|LEKR1	MULTI-MSMS	HCT116MG_D190212_S3	3	498.206787109375	2	498.206878	994.399203	0.36145	0.00018008	0.085123	4.2409E-05	0.44657	0.00022248	498.2068947359609	22.223	0.46902	22.224	22.042	22.511	0.00074577					15	8	3	0	0	0	0.82475	1	7861	7861		8.5933	1.304	1	12149000	+		21764	14102	13758	13836	20907	20907					-0.09822051143612498
NEESQILQP	9	Unmodified	_NEESQILQP_					0	0	0		PODXL2|p.R90Q|1|0.42|ENSG00000114631|chr3:127639443-127639443|G/A|missense_variant	PODXL2|p.R90Q|1|0.42|ENSG00000114631|chr3:127639443-127639443|G/A|missense_variant	PODXL2|p.R90Q|1|0.42|ENSG00000114631|chr3:127639443-127639443|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.2493286132812	2	529.261653	1056.50875	0.44476	0.00023539	-0.6041	-0.00031973	-0.15934	-8.4335E-05	529.2609797829707	17.248	0.26145	16.899	16.821	17.082	-0.34933					5	4	2	0	0	0	0.16908	1	5909	5909		26.884	0	1	3260300			21765	9760	13759	13837	20908	20908					-0.01724045524269968
NEFDAIQKA	9	Unmodified	_NEFDAIQKA_					0	0	0		ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	MSMS	HCT116MG_D190212_S2	2	518.2592163085938	2	518.258914	1034.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.725	1	34.566	34.066	35.066	-0.15834								0	0	0	0.031974	1	12929	12929		80.676	31.122	1				21766	3352	13760	13838	20909	20909					-0.012597243161053484
NEFDRTIAE	9	Unmodified	_NEFDRTIAE_					0	0	0		ENSG00000176101|ENST00000322310|SSNA1;ENST00000459860.1_1_9:140083297-140084363:+|nuORF	ENSG00000176101|ENST00000322310|SSNA1	ENSG00000176101|ENST00000322310|SSNA1	MSMS	HCT116MG_D190212_S3	3	547.7593994140625	2	547.759278	1093.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.76	1	32.475	31.975	32.975	-0.28511								0	0	0	0.5317	1	12019	12019		27.223	1.8239	1				21767	5407	13761	13839	20910	20910					-0.03900929667042874
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	HCT116MG_D190212_S1	1	540.2722778320312	2	540.272021	1078.52949	0.56579	0.00030568	-0.24759	-0.00013377	0.3182	0.00017191	540.2718505366157	34.571	0.25951	34.571	34.441	34.701	0					7	4	2	0	0	0	0.0064416	1	12856	12856		125.04	75.105	1	31926000			21768	4744	13762	13840	20911	20911					-0.006634551446268233
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	HCT116MG_D190212_S2	2	540.2723388671875	2	540.272021	1078.52949	0.68173	0.00036832	-0.19236	-0.00010393	0.48937	0.00026439	540.2718440426318	34.686	0.46611	34.528	34.399	34.865	-0.15834					13	8	3	0	0	0	0.0039465	1	12917	12917		151.48	91.406	1	128330000			21769	4744	13762	13840	20912	20912					-0.006634551446268233
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	HCT116MG_D190212_S3	3	540.2721557617188	2	540.272021	1078.52949	0.35753	0.00019317	0.090767	4.9039E-05	0.4483	0.0002422	540.271908704513	34.917	0.31199	34.62	34.44	34.752	-0.29707					14	5	3	0	0	0	0.0010417	1	12874	12874		192.32	110.43	1	30826000			21770	4744	13762	13840	20913	20913					-0.006634551446268233
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	HCT116MG_D190212_S4	4	540.2720336914062	2	540.272021	1078.52949	0.44545	0.00024067	5.6244E-05	3.0387E-08	0.44551	0.0002407	540.2719191157689	35.006	0.20762	34.62	34.49	34.698	-0.38606					6	3	2	0	0	0	0.01386	1	12806	12806		103.82	56.075	1	10386000			21771	4744	13762	13840	20914	20914					-0.006634551446268233
NEFGFFSRI	9	Unmodified	_NEFGFFSRI_					0	0	0			REV__SEC14L5|p.P307Lfs*17|1|0.52|ENSG00000103184|chr16:4996990-4996990|C/-|frameshift_variant	REV__SEC14L5|p.P307Lfs*17|1|0.52|ENSG00000103184|chr16:4996990-4996990|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	372.223876953125	3	372.853941	1115.53999	-0.33199	-0.00012378	0.87818	0.00032743	0.54619	0.00020365	372.85426200588626	41.132	0.15473	41.064	40.934	41.089	-0.068199					4	2	2	0	0	0	0.25248	1	15501	15501		11.495	0	1	8036900	+		21772	11180	13763	13841	20915	20915					-0.013154276995237524
NEFHFNIY	8	Unmodified	_NEFHFNIY_					0	0	0		nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2486572265625	2	542.248349	1082.48214	0.48145	0.00026107	-0.10085	-5.4688E-05	0.3806	0.00020638	542.2482103264261	51.462	0.41166	51.28	51.117	51.528	-0.18195					11	7	2	0	0	0	0.065113	1	19743	19743		107.19	51.01	1	67971000			21773	4111	13764	13842	20916	20916					-0.055796896249376005
NEFHFNIY	8	Unmodified	_NEFHFNIY_					0	0	0		nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	nc|ENSG00000151364|Q9BQ13-2|KCTD14	MULTI-MSMS	HCT116MG_D190212_S3	3	542.2489013671875	2	542.248349	1082.48214	0.4381	0.00023756	0.023539	1.2764E-05	0.46163	0.00025032	542.2483678240225	51.611	0.20952	51.299	51.172	51.382	-0.31166					7	3	3	0	0	0	0.068735	1	19500	19500		103.35	55.605	1	6173400			21774	4111	13764	13842	20917	20917					-0.055796896249376005
NEFIITQH	8	Unmodified	_NEFIITQH_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.E1273*|1|0.29|ENSG00000144724|chr3:62281605-62281606|-/TGAACTGT|frameshift_variant;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant;ENST00000475012.5_1_3:62203523-62278979:+|nuORF;nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2557067871094	2	501.256174	1000.49779	0.50848	0.00025488	-0.56149	-0.00028145	-0.053014	-2.6574E-05	501.2557393648199	37.172	0.20694	37.172	37.042	37.249	0					5	3	2	0	0	0	0.040608	1	13882	13882		134.3	72.938	1	25472000			21775	3879	13765	13843	20918	20918					-0.0024340310790194053
NEFKHGKAP	9	Unmodified	_NEFKHGKAP_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;nc|ENSG00000108654|P17844-2|DDX5	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	514.2698364257812	2	514.269616	1026.52468	0.19424	9.9889E-05	0.61502	0.00031629	0.80926	0.00041618	514.2693365250734	16.594	0.67687	16.252	15.943	16.62	-0.34183					17	12	3	0	0	0	0.045679	1	5594	5594		76.825	42.722	1	3928800			21776	656	13766	13844	20919	20919					0.01247705503283214
NEFKKVKE	8	Unmodified	_NEFKKVKE_					0	0	0			REV__ENSG00000066651|ENST00000334379|TRMT11	REV__ENSG00000066651|ENST00000334379|TRMT11	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2872009277344	2	511.287474	1020.5604	0.041876	2.1411E-05	-0.69653	-0.00035613	-0.65465	-0.00033472	511.2871033210442	44.173	0.36451	44.095	43.916	44.281	-0.078373					13	6	3	0	0	0	0.55794	1	16819	16819		36.044	6.9626	1	83746000	+		21777	10720	13767	13845	20920	20920					0.05093742960286818
NEFKNRDKY	9	Unmodified	_NEFKNRDKY_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	607.3018798828125	2	607.301644	1212.58874	0.23449	0.00014241	-0.061788	-3.7524E-05	0.1727	0.00010488	607.3016932965631	18.71	0.15559	18.346	18.269	18.425	-0.36325					4	2	2	0	0	0	0.053079	1	6472	6472		73.196	42.56	1	12655000			21778	1806	13768	13846	20921	20921					-0.009055591304331756
NEFKNRDKY	9	Unmodified	_NEFKNRDKY_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	404.7190246582031	3	405.203522	1212.58874	-0.52036	-0.00021085	0.49384	0.00020011	-0.026518	-1.0745E-05	405.2037380077851	18.71	0.20734	18.346	18.217	18.425	-0.36325					5	3	2	0	0	0	0.19289	1	6456	6456		26.021	8.5781	1	8641400			21779	1806	13768	13846	20922	20922					-0.009055591304331756
NEFLAQTL	8	Unmodified	_NEFLAQTL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000547393.5_1_12:96397563-96406985:-|nuORF;ENST00000553041.5_1_12:96394769-96402982:-|nuORF;ENST00000537111.6_1_12:96394769-96403848:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S1	1	935.4835205078125	1	935.483273	934.475997	0.75102	0.00070257	0.19302	0.00018056	0.94404	0.00088313	935.4834675370453	51.133	0.15478	51.133	51.04	51.194	0					4	2	2	0	0	0	0.045718	1	19552	19552		128.37	39.462	1	9753600			21780	2274	13769	13847	20923	20923					0.006137921435311
NEFLAQTL	8	Unmodified	_NEFLAQTL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000547393.5_1_12:96397563-96406985:-|nuORF;ENST00000553041.5_1_12:96394769-96402982:-|nuORF;ENST00000537111.6_1_12:96394769-96403848:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S2	2	935.4846801757812	1	935.483273	934.475997	0.68082	0.00063689	0.39443	0.00036898	1.0752	0.0010059	935.483387516098	51.322	0.36041	51.143	50.966	51.326	-0.17869					13	6	3	0	0	0	0.033555	1	19685	19685		141.83	41.455	1	49477000			21781	2274	13769	13847	20924	20924					0.006137921435311
NEFLAQTL	8	Unmodified	_NEFLAQTL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000547393.5_1_12:96397563-96406985:-|nuORF;ENST00000553041.5_1_12:96394769-96402982:-|nuORF;ENST00000537111.6_1_12:96394769-96403848:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S3	3	935.4837036132812	1	935.483273	934.475997	0.69241	0.00064774	-0.0033006	-3.0877E-06	0.68911	0.00064465	935.4831066583981	51.51	0.36718	51.199	51.015	51.382	-0.31166					13	6	3	0	0	0	0.014149	1	19451	19451		158.2	39.308	1	24375000			21782	2274	13769	13847	20925	20925					0.006137921435311
NEFLAQTL	8	Unmodified	_NEFLAQTL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000547393.5_1_12:96397563-96406985:-|nuORF;ENST00000553041.5_1_12:96394769-96402982:-|nuORF;ENST00000537111.6_1_12:96394769-96403848:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MSMS	HCT116MG_D190212_S3	3	468.2452697753906	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.59	1	51.278	50.778	51.778	-0.31166								0	0	0	0.44863	1	19482	19482		46.021	22	1				21783	2274	13769	13847	20926	20926					0.006137921435311
NEFLAQTL	8	Unmodified	_NEFLAQTL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000547393.5_1_12:96397563-96406985:-|nuORF;ENST00000553041.5_1_12:96394769-96402982:-|nuORF;ENST00000537111.6_1_12:96394769-96403848:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S4	4	935.4830932617188	1	935.483273	934.475997	0.65504	0.00061277	-0.0038354	-3.5879E-06	0.6512	0.00060919	935.483291584733	51.526	0.36407	51.176	51.046	51.41	-0.35028					10	6	2	0	0	0	0.014149	1	19206	19206		158.2	42.511	1	5715900			21784	2274	13769	13847	20927	20927					0.006137921435311
NEFLTREL	8	Unmodified	_NEFLTREL_					0	0	0		ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	511.2693176269531	2	511.269281	1020.52401	0.23952	0.00012246	0.035379	1.8088E-05	0.2749	0.00014055	511.2692490700306	44.277	0.32216	44.277	44.088	44.41	0					10	5	2	0	0	0	0.033255	1	16750	16750		142.08	45.795	1	87307000			21785	4052	13770	13848	20928	20928					0.0145686606357458
NEFLTREL	8	Unmodified	_NEFLTREL_					0	0	0		ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1021.533203125	1	1021.53129	1020.52401	0.496	0.00050668	0.47161	0.00048177	0.96762	0.00098845	1021.5317958105067	44.225	0.20796	44.147	44.019	44.227	-0.078373					6	3	2	0	0	0	0.016814	1	16803	16803		155.95	67	1	33914000			21786	4052	13770	13848	20929	20929					0.0145686606357458
NEFLTREL	8	Unmodified	_NEFLTREL_					0	0	0		ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	MSMS	HCT116MG_D190212_S2	2	511.2696838378906	2	511.269281	1020.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.459	1	44.374	43.874	44.874	-0.084797								0	0	0	0.48722	1	16885	16885		43.858	11.553	1				21787	4052	13770	13848	20930	20930					0.0145686606357458
NEFLTREL	8	Unmodified	_NEFLTREL_					0	0	0		ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	511.2872009277344	2	511.269281	1020.52401	0.066668	3.4085E-05	0.25707	0.00013143	0.32374	0.00016552	511.26935350045943	44.225	0.41558	44.147	43.916	44.332	-0.078373					18	7	4	0	0	0	0.0073598	1	16819	16819		133.05	44.098	1	384270000			21788	4052	13770	13848	20931	20931					0.0145686606357458
NEFLTREL	8	Unmodified	_NEFLTREL_					0	0	0		ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	511.2695007324219	2	511.269281	1020.52401	0.4142	0.00021177	0.0076888	3.931E-06	0.42189	0.0002157	511.2692174077099	44.508	0.37738	44.201	44.019	44.396	-0.30759					20	9	4	0	0	0	0.033255	3	16626	16626;16664;16684		142.08	51.044	1	102710000			21789	4052	13770	13848	20932;20933;20934	20932					0.0145686606357458
NEFLTREL	8	Unmodified	_NEFLTREL_					0	0	0		ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	ENST00000529173.5_1_11:75110591-75112804:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	511.26953125	2	511.269281	1020.52401	0.21165	0.00010821	0.23713	0.00012124	0.44878	0.00022945	511.2692385877256	44.586	0.2729	44.213	43.977	44.25	-0.37326					11	5	3	0	0	0	0.033255	1	16412	16412		142.08	45.795	1	17920000			21790	4052	13770	13848	20935	20935					0.0145686606357458
NEFPNPAAH	9	Unmodified	_NEFPNPAAH_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7303466796875	2	498.730323	995.446094	0.54471	0.00027166	-0.63953	-0.00031895	-0.094821	-4.729E-05	498.72982172216314	29.822	0.51669	29.521	29.134	29.65	-0.30095					15	9	2	0	0	0	0.071351	2	10895	10895;10958		64.236	19.264	1	11763000			21791	2337	13771	13849	20936;20937	20936					-0.05181146801817249
NEFPNPAAH	9	Unmodified	_NEFPNPAAH_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	498.7308349609375	2	498.730323	995.446094	0.56118	0.00027988	-0.025852	-1.2893E-05	0.53533	0.00026698	498.73034885324535	29.82	0.5288	29.584	29.239	29.768	-0.23655					14	9	2	0	0	0	0.071351	1	10883	10883		64.236	18.215	1	3695700			21792	2337	13771	13849	20938	20938					-0.05181146801817249
NEFQGAEAM	9	Unmodified	_NEFQGAEAM_					0	0	0		ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MSMS	HCT116MG_D190212_S2	2	996.4090576171875	1	996.409122	995.401846	0.81661	0.00081367	-0.032357	-3.2241E-05	0.78425	0.00078143	996.4093767027135	36.267	0.20727	36.139	36.019	36.226	-0.12799					8	3	3	0	0	0	0.0043772	1	13568	13568		145.13	83.772	1	30957000			21793	2258	13772	13850	20939	20939					-0.09603919010305617
NEFQGAEAM	9	Unmodified	_NEFQGAEAM_					0	0	0		ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7081298828125	2	498.708199	995.401846	0.61219	0.0003053	0.26623	0.00013277	0.87842	0.00043807	498.7082400813976	36.29	0.36279	36.162	35.967	36.33	-0.12799					8	6	2	0	0	0	0.01405	1	13580	13580		103.35	45.882	1	25175000			21794	2258	13772	13850	20940	20940					-0.09603919010305617
NEFQGAEAM	9	Unmodified	_NEFQGAEAM_					0	0	0		ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MSMS	HCT116MG_D190212_S3	3	996.4089965820312	1	996.409122	995.401846	0.29962	0.00029854	0.41142	0.00040995	0.71104	0.00070849	996.4093569509575	36.44	0.26002	36.139	35.989	36.249	-0.30113					10	4	3	0	0	0	0.011132	1	13466	13466		110.55	66.146	1	10973000			21795	2258	13772	13850	20941	20941					-0.09603919010305617
NEFQGAEAM	9	Unmodified	_NEFQGAEAM_					0	0	0		ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MSMS	HCT116MG_D190212_S3	3	498.70867919921875	2	498.708199	995.401846	0.17086	8.5208E-05	0.40694	0.00020295	0.5778	0.00028815	498.7083066534757	36.458	0.36426	36.157	35.989	36.353	-0.30113					9	6	2	0	0	0	0.01405	1	13482	13482		103.35	41.996	1	11464000			21796	2258	13772	13850	20942	20942					-0.09603919010305617
NEFQGAEAM	9	Unmodified	_NEFQGAEAM_					0	0	0		ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MSMS	HCT116MG_D190212_S4	4	996.4087524414062	1	996.409122	995.401846	0.69458	0.00069208	-0.28971	-0.00028867	0.40487	0.00040341	996.4086154893221	36.537	0.25924	36.152	35.97	36.229	-0.38558					6	4	2	0	0	0	0.090581	1	13402	13402		60.074	29.437	1	3093200			21797	2258	13772	13850	20943	20943					-0.09603919010305617
NEFQGAEAM	9	Unmodified	_NEFQGAEAM_					0	0	0		ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	ENSG00000110721|ENST00000265689|CHKA	MULTI-MATCH	HCT116MG_D190212_S4	4		2	498.708199	995.401846	0.5341	0.00026636	-0.33046	-0.0001648	0.20365	0.00010156	498.7082220873505	36.566	0.20735	36.18	36.022	36.23	-0.38519	0.013946	-0.00044357	NaN	103.35	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2758700			21798	2258	13772	13850							-0.09603919010305617
NEFQVPSKS	9	Unmodified	_NEFQVPSKS_					0	0	0			REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	REV__DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2595825195312	2	518.258914	1034.50327	0.14781	7.6605E-05	0.54314	0.00028148	0.69095	0.00035809	518.2591960037407	34.885	0.2082	34.588	34.492	34.7	-0.29707					6	3	2	0	0	0	0.52876	1	12889	12889		15.248	1.3424	1	3899200	+		21799	10417	13773	13851	20944	20944					-0.01259724316082611
NEFRFYVEQR	10	Unmodified	_NEFRFYVEQR_					0	0	0			REV__APOBEC3D|p.C109Afs*6|1|0.35|ENSG00000243811|chr22:39025180-39025180|C/-|frameshift_variant	REV__APOBEC3D|p.C109Afs*6|1|0.35|ENSG00000243811|chr22:39025180-39025180|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	694.3409423828125	2	694.341301	1386.66805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.354	1	40.053	39.553	40.553	-0.30161								0	0	0	0.91362	1	14978	14978		19.362	0.10495	1		+		21800	9966	13774	13852	20945	20945					-0.009819121763030125
NEFSKCFQET	10	Unmodified	_NEFSKCFQET_					0	0	0			REV__ENST00000468572.2_2_1:53662615-53668106:+|nuORF	REV__ENST00000468572.2_2_1:53662615-53668106:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	411.51416015625	3	411.513256	1231.51794	-0.13577	-5.5869E-05	1.9185	0.00078948	1.7827	0.00073361	411.5142929206754	17.771	0.31341	17.414	17.284	17.597	-0.35647					9	5	3	0	0	0	0.84626	1	6085	6085		4.7159	0	1	6250700	+		21801	12746	13775	13853	20946	20946					-0.08856020230268769
NEFSKCFQET	10	Unmodified	_NEFSKCFQET_					0	0	0			REV__ENST00000468572.2_2_1:53662615-53668106:+|nuORF	REV__ENST00000468572.2_2_1:53662615-53668106:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	411.513256	1231.51794	-0.13577	-5.5869E-05	1.9185	0.00078948	1.7827	0.00073361	411.5142929206754	17.771	0.31341	17.414	17.284	17.597	-0.35647	0	0	NaN	4.7159	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6250700	+		21802	12746	13775	13853							-0.08856020230268769
NEFTTHIL	8	Unmodified	_NEFTTHIL_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MSMS	HCT116MG_D190212_S2	2	487.75079345703125	2	487.750724	973.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.489	1	45.397	44.897	45.897	-0.092472								0	0	0	0.40715	1	17300	17300		48.346	10.17	1				21803	2587	13776	13854	20947	20947					-0.0009080548219344564
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000167081|ENST00000373489|PBX3	nc|ENSG00000185630|P40424-2|PBX1	nc|ENSG00000185630|P40424-2|PBX1	MULTI-MSMS	HCT116MG_D190212_S2	2	489.7212219238281	2	489.72111	977.427666	0.31991	0.00015667	-0.57003	-0.00027916	-0.25012	-0.00012249	489.72086502169543	36.641	0.36197	36.526	36.343	36.705	-0.11479					15	6	3	0	0	0	0.23195	1	13710	13710		67.344	25.249	1	54116000			21804	5839	13777	13855	20948	20948					-0.0619502476802154
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000167081|ENST00000373489|PBX3	nc|ENSG00000185630|P40424-2|PBX1	nc|ENSG00000185630|P40424-2|PBX1	MULTI-MSMS	HCT116MG_D190212_S3	3	489.720947265625	2	489.72111	977.427666	0.070484	3.4518E-05	0.40154	0.00019664	0.47202	0.00023116	489.7211133870235	36.833	0.416	36.532	36.353	36.769	-0.30113					18	7	3	0	0	0	0.31873	1	13612	13612		57.471	27.247	1	32043000			21805	5839	13777	13855	20949	20949					-0.0619502476802154
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000167081|ENST00000373489|PBX3	nc|ENSG00000185630|P40424-2|PBX1	nc|ENSG00000185630|P40424-2|PBX1	MULTI-MSMS	HCT116MG_D190212_S3	3	978.434814453125	1	978.434943	977.427666	0.61458	0.00060132	-0.5516	-0.0005397	0.062979	6.1621E-05	978.4345406872427	36.823	0.25971	36.522	36.353	36.613	-0.30113					6	4	2	0	0	0	0.036435	1	13632	13632		139.14	77.781	1	3720500			21806	5839	13777	13855	20950	20950					-0.0619502476802154
NEFTTHVM	8	Unmodified	_NEFTTHVM_					0	0	0		nc|ENSG00000185630|P40424-2|PBX1;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000204304|ENST00000375050|PBX2;ENSG00000185630|ENST00000420696|PBX1;ENST00000538998.1_1_9:128606084-128725334:+|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000167081|ENST00000373489|PBX3	nc|ENSG00000185630|P40424-2|PBX1	nc|ENSG00000185630|P40424-2|PBX1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	489.72111	977.427666	0.16179	7.9234E-05	-1.1917	-0.00058359	-1.0299	-0.00050435	489.7208126005553	36.64	0.20872	36.64	36.47	36.679	0	0.074508	-0.001089	NaN	67.344	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3522900			21807	5839	13777	13855							-0.0619502476802154
NEFVSNSATV	10	Unmodified	_NEFVSNSATV_					0	0	0			REV__ATRX|p.C280S|1|0.24|ENSG00000085224|chrX:77684418-77684418|A/T|missense_variant	REV__ATRX|p.C280S|1|0.24|ENSG00000085224|chrX:77684418-77684418|A/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	534.2562255859375	2	534.253828	1066.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.961	1	28.739	28.239	29.239	-0.22195								0	0	0	0.88085	1	10502	10502		18.373	2.224	1		+		21808	10014	13778	13856	20951	20951					-0.0374833204132301
NEGQTALHY	9	Unmodified	_NEGQTALHY_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-MSMS	HCT116MG_D190212_S1	1	516.7405395507812	2	516.740888	1031.46722	0.62625	0.00032361	-0.65332	-0.0003376	-0.027072	-1.3989E-05	516.740357059991	28.929	0.20887	28.929	28.798	29.007	0					5	3	2	0	0	0	0.035349	1	10581	10581		81.89	30.26	1	3819700			21809	6498	13779	13857	20952	20952					-0.047251814929495595
NEGQTALHY	9	Unmodified	_NEGQTALHY_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7412719726562	2	516.740888	1031.46722	0.42503	0.00021963	0.042591	2.2009E-05	0.46762	0.00024164	516.7407747930434	29.361	0.2565	29.06	28.929	29.185	-0.30095					10	4	3	0	0	0	0.0090481	1	10778	10778		115.69	33.163	1	18178000			21810	6498	13779	13857	20953	20953					-0.047251814929495595
NEGQTALHY	9	Unmodified	_NEGQTALHY_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MSMS	HCT116MG_D190212_S3	3	516.7408447265625	2	516.740888	1031.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.467	1	29.231	28.731	29.731	-0.23655								0	0	0	0.1107	1	10706	10706		53.833	19.73	1				21811	6498	13779	13857	20954	20954					-0.047251814929495595
NEGTATYAA	9	Unmodified	_NEGTATYAA_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S1	1	897.3952026367188	1	897.394852	896.387576	0.70297	0.00063084	-0.18977	-0.0001703	0.5132	0.00046055	897.3945401605374	22.402	0.31315	22.402	22.22	22.533	0					11	5	3	0	0	0	0.01405	1	7933	7933		103.35	65.38	1	18484000			21812	5303	13780	13858	20955	20955					-0.06476248166961796
NEGTATYAA	9	Unmodified	_NEGTATYAA_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	897.3944702148438	1	897.394852	896.387576	1.1164	0.0010018	-0.18844	-0.00016911	0.92792	0.00083271	897.3944996302265	22.706	0.41565	22.321	22.154	22.57	-0.3852					17	7	3	0	0	0	0.027442	1	8052	8052		88.954	34.18	1	86645000			21813	5303	13780	13858	20956	20956					-0.06476248166961796
NEGTATYAA	9	Unmodified	_NEGTATYAA_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S3	3	897.3950805664062	1	897.394852	896.387576	0.92987	0.00083446	-0.16019	-0.00014375	0.76968	0.00069071	897.3945980420693	22.381	0.52097	22.381	22.198	22.719	0.0004406					21	9	4	0	0	0	0.0094709	1	7852	7852		114.65	59.876	1	37280000			21814	5303	13780	13858	20957	20957					-0.06476248166961796
NEGTATYAA	9	Unmodified	_NEGTATYAA_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S4	4	897.3955078125	1	897.394852	896.387576	0.60967	0.00054711	0.4413	0.00039602	1.051	0.00094313	897.3951730108283	22.605	0.41743	22.367	22.185	22.603	-0.23758					10	7	2	0	0	0	0.027442	1	7877	7877		88.954	42.933	1	7140800			21815	5303	13780	13858	20958	20958					-0.06476248166961796
NEGTVFTF	8	Unmodified	_NEGTVFTF_					0	0	0		ENSG00000085377|ENST00000652536|PREP;PREP|p.L670Cfs*20|1|0.16|ENSG00000085377|chr6:105278269-105278269|G/-|frameshift_variant;PREP|p.G459Rfs*58|1|0.25|ENSG00000085377|chr6:105288837-105288838|-/T|frameshift_variant	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	HCT116MG_D190212_S3	3	914.4263305664062	1	914.425424	913.418148	0.75052	0.00068629	-0.22182	-0.00020284	0.52869	0.00048345	914.4256029847674	55.244	0.2091	54.953	54.874	55.083	-0.2918					7	3	3	0	0	0	0.079196	1	20983	20983		99.799	42.328	1	6677000			21816	1452	13781	13859	20959	20959					-0.042024697819101675
NEGVATYAA	9	Unmodified	_NEGVATYAA_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S1	1	895.4154663085938	1	895.415588	894.408311	0.99747	0.00089315	-0.02785	-2.4937E-05	0.96962	0.00086822	895.4153564056063	28.508	0.31927	28.508	28.375	28.694	0					9	5	2	0	0	0	0.0094709	1	10392	10392		114.65	36.665	1	17006000			21817	4976	13782	13860	20960	20960					-0.04311657787297918
NEGVATYAA	9	Unmodified	_NEGVATYAA_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S2	2	895.4155883789062	1	895.415588	894.408311	1.013	0.00090702	-0.095981	-8.5943E-05	0.91698	0.00082108	895.4154681786259	28.896	0.3584	28.58	28.402	28.761	-0.31613					13	6	3	0	0	0	0.0062667	1	10546	10546		126.57	48.582	1	76233000			21818	4976	13782	13860	20961	20961					-0.04311657787297918
NEGVATYAA	9	Unmodified	_NEGVATYAA_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S3	3	895.4163818359375	1	895.415588	894.408311	1.1579	0.0010368	-0.29479	-0.00026396	0.86311	0.00077284	895.415213123717	28.877	0.57247	28.655	28.473	29.046	-0.22195					18	10	2	0	0	0	0.0094709	1	10469	10469		114.65	36.665	1	54851000			21819	4976	13782	13860	20962	20962					-0.04311657787297918
NEGVATYAA	9	Unmodified	_NEGVATYAA_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S4	4	895.4157104492188	1	895.415588	894.408311	0.68812	0.00061615	0.059011	5.2839E-05	0.74713	0.00066899	895.415565350257	28.993	0.41542	28.652	28.47	28.886	-0.34059					13	7	2	0	0	0	0.01405	1	10452	10452		103.35	25.369	1	21133000			21820	4976	13782	13860	20963	20963					-0.04311657787297918
NEGVIIIGA	9	Unmodified	_NEGVIIIGA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	HCT116MG_D190212_S3	3	885.5042114257812	1	885.504009	884.496732	1.1025	0.00097628	-0.081514	-7.2181E-05	1.021	0.0009041	885.5035903038045	48.758	0.41426	48.442	48.296	48.71	-0.31596					10	7	2	0	0	0	0.010834	1	18362	18362		111.29	15.002	1	9815900			21821	3431	13783	13861	20964	20964					0.04986382523202337
NEGVSYEF	8	Unmodified	_NEGVSYEF_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;ENST00000554960.1_1_14:72152100-72171529:+|nuORF	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	944.4000244140625	1	944.399603	943.392327	0.83645	0.00078995	-0.24087	-0.00022747	0.59559	0.00056247	944.3992782793464	44.528	0.31355	44.443	44.274	44.588	-0.084801					9	5	2	0	0	0	0.057078	1	16947	16947		115.69	60.918	1	17302000			21822	6154	13784	13862	20965	20965					-0.0816336402417619
NEGVSYEF	8	Unmodified	_NEGVSYEF_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;ENST00000554960.1_1_14:72152100-72171529:+|nuORF	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	HCT116MG_D190212_S3	3	944.4024047851562	1	944.399603	943.392327	0.87871	0.00082985	0.85163	0.00080428	1.7303	0.0016341	944.3998707998023	44.822	0.28595	44.513	44.394	44.68	-0.30927					11	6	2	0	0	0	0.038852	1	16769	16769		136.33	61.911	1	9907100			21823	6154	13784	13862	20966	20966					-0.0816336402417619
NEGVTNHTP	9	Unmodified	_NEGVTNHTP_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1;ENST00000545724.2_1_12:68718988-68726025:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	484.72515869140625	2	484.725238	967.435923	0.14339	6.9506E-05	0.62685	0.00030385	0.77024	0.00037335	484.7252933516317	18.792	0.52101	18.792	18.402	18.923	0					20	9	3	0	0	0	0.061422	1	6450	6450		69.105	11.634	1	10919000			21824	2296	13785	13863	20967	20967					-0.04909754527034238
NEGVTNHTP	9	Unmodified	_NEGVTNHTP_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1;ENST00000545724.2_1_12:68718988-68726025:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.7255859375	2	484.725238	967.435923	0.15604	7.5637E-05	0.35186	0.00017056	0.5079	0.00024619	484.7253035271403	19.297	0.67668	18.928	18.575	19.252	-0.3695					28	12	3	0	0	0	0.061422	1	6620	6620		69.105	15.272	1	106070000			21825	2296	13785	13863	20968	20968					-0.04909754527034238
NEGVTNHTP	9	Unmodified	_NEGVTNHTP_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1;ENST00000545724.2_1_12:68718988-68726025:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	968.4443969726562	1	968.443199	967.435923	0.61768	0.00059819	0.19247	0.00018639	0.81015	0.00078459	968.4431647862646	19.298	0.41704	18.928	18.627	19.044	-0.3695					12	7	2	0	0	0	0.0034381	1	6672	6672		160.69	87.722	1	10263000			21826	2296	13785	13863	20969	20969					-0.04909754527034238
NEGVTNHTP	9	Unmodified	_NEGVTNHTP_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1;ENST00000545724.2_1_12:68718988-68726025:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	484.7254333496094	2	484.725238	967.435923	0.17408	8.4381E-05	0.19085	9.2509E-05	0.36493	0.00017689	484.7252548304639	18.519	1.0414	18.596	18.101	19.142	0.076334					51	19	4	0	0	0	0.041798	3	6193	6193;6300;6428		78.728	25.333	1	98885000			21827	2296	13785	13863	20970;20971;20972	20970					-0.04909754527034238
NEGVTNHTP	9	Unmodified	_NEGVTNHTP_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1;ENST00000545724.2_1_12:68718988-68726025:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	968.4432983398438	1	968.443199	967.435923	0.5789	0.00056064	0.16546	0.00016024	0.74437	0.00072088	968.4429996815078	18.432	0.41673	18.508	18.309	18.726	0.076334					13	7	2	0	0	0	0.0035631	1	6280	6280		173.69	112.33	1	3931600			21828	2296	13785	13863	20973	20973					-0.04909754527034238
NEGVTNHTP	9	Unmodified	_NEGVTNHTP_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1;ENST00000545724.2_1_12:68718988-68726025:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	968.4434204101562	1	968.443199	967.435923	0.49651	0.00048084	0.32149	0.00031134	0.818	0.00079218	968.4434463269595	18.77	0.36391	18.589	18.355	18.719	-0.18052					10	6	2	0	0	0	0.0051419	1	6335	6335		136.39	78.67	1	2334200			21829	2296	13785	13863	20974	20974					-0.04909754527034238
NEGVTNHTP	9	Unmodified	_NEGVTNHTP_					0	0	0		ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1;ENST00000545724.2_1_12:68718988-68726025:-|nuORF;MDM1|p.W325Gfs*4|1|0.24|ENSG00000111554|chr12:68321379-68321379|A/-|frameshift_variant;MDM1|p.I618Ffs*46|1|0.39|ENSG00000111554|chr12:68302740-68302740|T/-|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	ENST00000393543.7_1_12:68720268-68720871:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	484.725238	967.435923	-0.035164	-1.7045E-05	0.42023	0.00020369	0.38506	0.00018665	484.72536291154114	18.82	0.8838	18.639	18.147	19.031	-0.18052	-0.099402	0.00011179	NaN	78.728	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40774000			21830	2296	13785	13863							-0.04909754527034238
NEGYEQYES	9	Unmodified	_NEGYEQYES_					0	0	0			REV__ENSG00000132010|ENST00000334213|ZNF20	REV__ENSG00000132010|ENST00000334213|ZNF20	MULTI-SECPEP	HCT116MG_D190212_S3	3	560.2192993164062	2	559.717276	1117.42	0.48421	0.00027102	0.22094	0.00012366	0.70515	0.00039468	560.2188296305607	25.254	0.2606	25.148	24.995	25.256	-0.10618					7	4	2	0	0	0	0.26009	1	9035	9035		6.7232	2.3939	1	2634600	+		21831	11978	13786	13864	20975	20975					-0.13401505554611504
NEGYFLGE	8	Unmodified	_NEGYFLGE_					0	0	0		ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	MSMS	HCT116MG_D190212_S2	2	464.7080993652344	2	464.705983	927.397412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.06	1	52.871	52.371	53.371	-0.18922								0	0	0	0.67883	1	20397	20397		32.305	10.559	1				21832	4617	13787	13865	20976	20976					-0.0691906016155599
NEHAHFQKA	9	Unmodified	_NEHAHFQKA_					0	0	0		nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-7|APP	nc|ENSG00000142192|P05067-7|APP	MULTI-MSMS	HCT116MG_D190212_S2	2	541.2623901367188	2	541.262322	1080.51009	0.37233	0.00020153	-0.26664	-0.00014432	0.1057	5.7209E-05	541.2622121442605	15.737	0.31329	15.402	15.271	15.585	-0.33451					6	5	2	0	0	0	0.029121	1	5272	5272		87.258	58.177	1	9710300			21833	3748	13788	13866	20977	20977					-0.02694366644868751
NEHCGWHAP	9	Carbamidomethyl (C)	_NEHC(Carbamidomethyl (C))GWHAP_	NEHC(1)GWHAP		NEHC(110)GWHAP		0	1	0		ENST00000311117.7_1_7:104654969-104681369:+|nuORF	ENST00000311117.7_1_7:104654969-104681369:+|nuORF	ENST00000311117.7_1_7:104654969-104681369:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	554.2249145507812	2	554.224882	1106.43521	0.28655	0.00015882	0.51471	0.00028526	0.80126	0.00044408	554.2251116521828	26.411	0.36286	26.05	25.921	26.284	-0.36164					10	6	2	0	0	0	0.0094709	1	9582	9582		114.65	76.473	1	18026000			21834	7057	13789	13867	20978	20978	43				-0.11374872447754569
NEHDYAKAA	9	Unmodified	_NEHDYAKAA_					0	0	0		EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	509.7331237792969	2	509.733063	1017.45157	0.33244	0.00016946	0.04822	2.4579E-05	0.38066	0.00019404	509.7329601521545	16.395	0.20807	16.395	16.265	16.473	0					7	3	3	0	0	0	0.0081783	1	5537	5537		117.84	66.208	1	9093100			21835	775	13790	13868	20979	20979					-0.05645468010004606
NEHDYAKAA	9	Unmodified	_NEHDYAKAA_					0	0	0		EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	509.733154296875	2	509.733063	1017.45157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.833	1	16.491	15.991	16.991	-0.34183								0	0	0	3.5624E-13	1	5691	5691		184.36	105.63	1				21836	775	13790	13868	20980	20980					-0.05645468010004606
NEHERVVKA	9	Unmodified	_NEHERVVKA_					0	0	0		nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;ENSG00000198561|ENST00000399050|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	MULTI-MSMS	HCT116MG_D190212_S2	2	541.2911987304688	2	541.291079	1080.56761	0.36957	0.00020005	0.032581	1.7636E-05	0.40215	0.00021768	541.2909418946535	15.684	0.31327	15.35	15.219	15.533	-0.33451					11	5	3	0	0	0	0.030601	1	5246	5246		85.764	41.906	1	12370000			21837	613	13791	13869	20981	20981					0.030544755607252227
NEHERVVKA	9	Unmodified	_NEHERVVKA_					0	0	0		nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;CTNND1|p.S895Ifs*8|1|0.33|ENSG00000198561|chr11:57814353-57814354|-/A|frameshift_variant;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;CTNND1|p.Q800Tfs*4|1|0.46|ENSG00000198561|chr11:57809427-57809428|-/A|frameshift_variant;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.E842Kfs*10|1|0.19|ENSG00000198561|chr11:57810192-57810192|A/-|frameshift_variant;ENSG00000198561|ENST00000399050|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	nc|ENSG00000198561|O60716-32|CTNND1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	541.291079	1080.56761	0.54831	0.0002968	-0.15548	-8.4161E-05	0.39283	0.00021264	541.2910222782542	15.458	0.15637	15.458	15.327	15.484	0	0.053937	-0.00015462	NaN	85.764	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8036700			21838	613	13791	13869							0.030544755607252227
NEHGSYRY	8	Unmodified	_NEHGSYRY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;ENST00000497886.5_1_16:2128976-2136835:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	HCT116MG_D190212_S1	1	513.236328125	2	513.225405	1024.43626	0.26911	0.00013812	-0.26164	-0.00013428	0.0074692	3.8334E-06	513.2254010184694	19.139	0.15616	19.139	19.027	19.183	0					4	2	2	0	0	0	0.29044	1	6635	6635		19.257	3.4098	1	1048700			21839	1880	13792	13870	20982	20982					-0.07498334807178253
NEHGSYRY	8	Unmodified	_NEHGSYRY_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;ENST00000497886.5_1_16:2128976-2136835:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2256469726562	2	513.225405	1024.43626	0.21109	0.00010834	0.20771	0.0001066	0.4188	0.00021494	513.225462159547	19.855	0.2592	19.48	19.351	19.61	-0.37503					9	4	3	0	0	0	0.22303	1	6919	6919		69.105	29.148	1	11494000			21840	1880	13792	13870	20983	20983					-0.07498334807178253
NEHLQVEGH	9	Unmodified	_NEHLQVEGH_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MSMS	HCT116MG_D190212_S1	1	531.7520141601562	2	531.751787	1061.48902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.294	1	20.294	19.794	20.794	0								0	0	0	0.57787	1	7085	7085		24.991	11.085	1				21841	1008	13793	13871	20984	20984					-0.039263767443799225
NEHNVALF	8	Unmodified	_NEHNVALF_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MSMS	HCT116MG_D190212_S2	2	472.235107421875	2	472.235242	942.45593	0.3695	0.00017449	-0.24169	-0.00011413	0.12781	6.0356E-05	472.2349639445401	43.528	0.30924	43.454	43.303	43.612	-0.073376					11	5	3	0	0	0	0.42581	1	16559	16559		47.749	13.646	1	10636000			21842	1150	13794	13872	20985	20985					-0.017599587964355123
NEHNVALF	8	Unmodified	_NEHNVALF_					0	0	0		ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5	ENSG00000065150|ENST00000651721|IPO5	ENSG00000065150|ENST00000651721|IPO5	MULTI-MATCH	HCT116MG_D190212_S3	3		2	472.235242	942.45593	0.29479	0.00013921	-0.26217	-0.00012381	0.032614	1.5402E-05	472.2351142637339	43.937	0.31303	43.631	43.396	43.709	-0.30616	0.088248	-1.2492E-05	NaN	47.749	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3059700			21843	1150	13794	13872							-0.017599587964355123
NEIAAVVF	8	Unmodified	_NEIAAVVF_					0	0	0		nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3;ENST00000464058.1_1_21:18981288-18985128:-|nuORF	nc|ENSG00000154640|Q14201-2|BTG3	nc|ENSG00000154640|Q14201-2|BTG3	MULTI-MSMS	HCT116MG_D190212_S3	3	862.4674072265625	1	862.466895	861.459619	0.7572	0.00065306	0.30896	0.00026647	1.0662	0.00091953	862.4671631089828	54.983	0.26145	54.691	54.56	54.822	-0.2918					7	4	2	0	0	0	0.064348	1	20863	20863		108	0	1	10590000			21844	4225	13795	13873	20986	20986					0.023347109774249475
NEIAAVVF	8	Unmodified	_NEIAAVVF_					0	0	0		nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3;ENST00000464058.1_1_21:18981288-18985128:-|nuORF	nc|ENSG00000154640|Q14201-2|BTG3	nc|ENSG00000154640|Q14201-2|BTG3	MULTI-MSMS	HCT116MG_D190212_S4	4	862.4675903320312	1	862.466895	861.459619	0.84247	0.00072661	0.040458	3.4893E-05	0.88293	0.0007615	862.4669911407686	55.011	0.20869	54.693	54.563	54.771	-0.31774					6	3	2	0	0	0	0.15965	1	20600	20600		81.613	0	1	7108300			21845	4225	13795	13873	20987	20987					0.023347109774249475
NEIAAVVF	8	Unmodified	_NEIAAVVF_					0	0	0		nc|ENSG00000154640|Q14201-2|BTG3;ENSG00000154640|ENST00000348354|BTG3;ENST00000464058.1_1_21:18981288-18985128:-|nuORF	nc|ENSG00000154640|Q14201-2|BTG3	nc|ENSG00000154640|Q14201-2|BTG3	MULTI-MATCH	HCT116MG_D190212_S2	2		1	862.466895	861.459619	0.76917	0.00066338	-0.092188	-7.9509E-05	0.67698	0.00058387	862.4668050057603	54.824	0.1539	54.636	54.56	54.714	-0.18797	-0.037052	-0.00013375	NaN	108	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29724000			21846	4225	13795	13873							0.023347109774249475
NEIASVAY	8	Unmodified	_NEIASVAY_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D;ENST00000462794.1_1_22:36912452-36912849:-|nuORF	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	HCT116MG_D190212_S2	2	866.4249877929688	1	866.425424	865.418148	0.57852	0.00050125	-0.52737	-0.00045692	0.051156	4.4323E-05	866.424912804476	37.872	0.25736	37.779	37.651	37.908	-0.09301					6	4	2	0	0	0	0.094591	1	14230	14230		96.285	14.672	1	16272000			21847	1695	13796	13874	20988	20988					-0.01994469781902808
NEIASVAY	8	Unmodified	_NEIASVAY_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D;ENST00000462794.1_1_22:36912452-36912849:-|nuORF	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	HCT116MG_D190212_S3	3	866.4261474609375	1	866.425424	865.418148	0.85773	0.00074316	-0.27838	-0.00024119	0.57935	0.00050197	866.4252612669262	38.077	0.22501	37.775	37.66	37.885	-0.30137					7	4	2	0	0	0	0.21275	1	14108	14108		71.134	13.662	1	6478400			21848	1695	13796	13874	20989	20989					-0.01994469781902808
NEIDTTPPP	9	Unmodified	_NEIDTTPPP_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	HCT116MG_D190212_S1	1	492.23681640625	2	492.237647	982.460741	0.53288	0.0002623	-0.94452	-0.00046493	-0.41164	-0.00020262	492.23713275537693	28.1	0.89338	28.1	27.748	28.641	0					26	16	2	0	0	0	0.15273	1	10211	10211		47.749	11.622	1	6585700			21849	3808	13797	13875	20990	20990					-0.03119119444329499
NEIDTTPPP	9	Unmodified	_NEIDTTPPP_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2375793457031	2	492.237647	982.460741	0.27568	0.0001357	-0.050952	-2.508E-05	0.22473	0.00011062	492.23767219394523	28.36	1.1305	28.03	27.719	28.849	-0.32987					46	21	3	0	0	0	0.01405	2	10306	10306;10594		103.35	39.117	1	35583000			21850	3808	13797	13875	20991;20992	20991					-0.03119119444329499
NEIDTTPPP	9	Unmodified	_NEIDTTPPP_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	983.4682006835938	1	983.468017	982.460741	0.74571	0.00073339	-0.024564	-2.4158E-05	0.72115	0.00070923	983.4678387644451	28.424	1.1305	28.094	27.719	28.849	-0.32987					33	21	3	0	0	0	0.0067688	1	10315	10315		122.18	51.046	1	34374000			21851	3808	13797	13875	20993	20993					-0.03119119444329499
NEIDTTPPP	9	Unmodified	_NEIDTTPPP_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	HCT116MG_D190212_S3	3	492.237548828125	2	492.237647	982.460741	0.27565	0.00013569	-0.52029	-0.00025611	-0.24464	-0.00012042	492.23756522386566	28.513	1.0945	28.307	27.811	28.906	-0.20593					57	20	3	0	0	0	0.041798	2	10219	10219;10451		78.728	30.382	1	27633000			21852	3808	13797	13875	20994;20995	20994					-0.03119119444329499
NEIDTTPPP	9	Unmodified	_NEIDTTPPP_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	HCT116MG_D190212_S3	3	983.4683837890625	1	983.468017	982.460741	0.92644	0.00091112	-0.52543	-0.00051674	0.40101	0.00039438	983.4673249952091	28.444	1.1464	28.239	27.811	28.958	-0.20593					46	21	3	0	0	0	0.035349	2	10473	10232;10473		81.89	35.869	1	13862000			21853	3808	13797	13875	20996;20997	20997					-0.03119119444329499
NEIDTTPPP	9	Unmodified	_NEIDTTPPP_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	HCT116MG_D190212_S4	4	492.2371826171875	2	492.237647	982.460741	0.12859	6.3299E-05	-1.0225	-0.0005033	-0.89387	-0.00044	492.2373517717232	28.642	1.1429	28.308	27.854	28.996	-0.33366					39	21	2	0	0	0	0.14171	3	10211	10211;10482;10500		49.933	15.831	1	6376300			21854	3808	13797	13875	20998;20999;21000	20998					-0.03119119444329499
NEIDTTPPP	9	Unmodified	_NEIDTTPPP_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	HCT116MG_D190212_S4	4	983.4675903320312	1	983.468017	982.460741	0.55732	0.0005481	-0.48901	-0.00048092	0.06831	6.7181E-05	983.4676083740044	28.629	0.83129	28.298	27.908	28.739	-0.33142					27	15	2	0	0	0	0.097615	1	10239	10239		58.679	20.705	1	2557400			21855	3808	13797	13875	21001	21001					-0.03119119444329499
NEIEDTFRQF	10	Unmodified	_NEIEDTFRQF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	HCT116MG_D190212_S1	1	649.8047485351562	2	649.804217	1297.59388	0.50675	0.00032929	0.14081	9.15E-05	0.64757	0.00042079	649.8043346584487	50.47	0.20574	50.47	50.368	50.574	0					6	3	2	0	0	0	0.017977	1	19275	19275		124.95	67.704	1	19626000			21856	2998	13798	13876	21002	21002					-0.04301300058477864
NEIEDTFRQF	10	Unmodified	_NEIEDTFRQF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	HCT116MG_D190212_S2	2	649.8046264648438	2	649.804217	1297.59388	0.66317	0.00043093	-0.10199	-6.6276E-05	0.56118	0.00036466	649.8040833010567	50.756	0.25767	50.585	50.456	50.713	-0.1719					14	4	4	0	0	0	0.00074706	1	19463	19463		180.74	131.18	1	108240000			21857	2998	13798	13876	21003	21003					-0.04301300058477864
NEIEKQAQA	9	Unmodified	_NEIEKQAQA_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7618408203125	2	515.76182	1029.50909	0.21089	0.00010877	0.12467	6.43E-05	0.33556	0.00017307	515.7618093285304	19.201	0.20817	18.832	18.732	18.94	-0.3695					8	3	3	0	0	0	0.0068642	1	6659	6659		121.35	57.385	1	13405000			21858	6550	13799	13877	21004	21004					-0.004486258044153146
NEIEKQAQA	9	Unmodified	_NEIEKQAQA_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7616577148438	2	515.76182	1029.50909	0.23181	0.00011956	-0.28769	-0.00014838	-0.055883	-2.8822E-05	515.7615778400358	18.467	0.36453	18.544	18.413	18.778	0.076334					10	6	2	0	0	0	0.0051419	1	6282	6282		136.39	60.631	1	8176000			21859	6550	13799	13877	21005	21005					-0.004486258044153146
NEIESGKIIF	10	Unmodified	_NEIESGKIIF_					0	0	0		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	575.3115234375	2	575.311146	1148.60774	0.55869	0.00032142	0.40136	0.00023091	0.96005	0.00055233	575.311217204557	47.484	0.3091	47.362	47.13	47.439	-0.12175					10	5	3	0	0	0	0.01041	1	18119	18119		146.68	73.712	1	21260000			21860	678	13800	13878	21006	21006					0.039379774406370416
NEIESGKIIF	10	Unmodified	_NEIESGKIIF_					0	0	0		DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	DIS3|p.F775Lfs*30|1|0.43|ENSG00000083520|chr13:72761940-72761940|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	575.311146	1148.60774	0.38149	0.00021947	1.3433	0.0007728	1.7248	0.00099228	575.3115948879484	47.375	0.13186	47.375	47.309	47.441	0	0.0061856	0.00082443	NaN	146.68	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5019300			21861	678	13800	13878							0.039379774406370416
NEIFFDRY	8	Unmodified	_NEIFFDRY_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	552.2617797851562	2	552.261456	1102.50836	0.31375	0.00017327	0.30421	0.000168	0.61796	0.00034128	552.2615933735531	48.074	0.20713	48.074	47.944	48.152	0					6	3	2	0	0	0	0.051049	1	18292	18292		122.18	122.18	1	20669000			21862	1949	13801	13879	21007	21007					-0.038794204534724486
NEIFFDRY	8	Unmodified	_NEIFFDRY_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	552.2617797851562	2	552.261456	1102.50836	0.63099	0.00034847	-0.061035	-3.3707E-05	0.56996	0.00031477	552.2615780464711	48.101	0.20272	47.968	47.841	48.044	-0.13281					5	3	2	0	0	0	0.4906	1	18388	18388		41.956	18.807	1	102090000			21863	1949	13801	13879	21008	21008					-0.038794204534724486
NEIFFDRY	8	Unmodified	_NEIFFDRY_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	552.26171875	2	552.261456	1102.50836	0.55454	0.00030625	0.25272	0.00013957	0.80726	0.00044582	552.261423483958	48.378	0.3126	48.062	47.879	48.192	-0.31596					13	5	3	0	0	0	0.043218	1	18195	18195		131.27	71.194	1	15627000			21864	1949	13801	13879	21009	21009					-0.038794204534724486
NEIFFDRY	8	Unmodified	_NEIFFDRY_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	552.2615356445312	2	552.261456	1102.50836	0.41288	0.00022802	0.40422	0.00022324	0.8171	0.00045125	552.2617975475595	48.461	0.193	48.094	47.935	48.128	-0.36728					5	3	2	0	0	0	0.31597	1	17961	17961		57.722	19.748	1	3834100			21865	1949	13801	13879	21010	21010					-0.038794204534724486
NEIGAIEKA	9	Unmodified	_NEIGAIEKA_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	HCT116MG_D190212_S3	3	472.7566833496094	2	472.756007	943.497461	0.13475	6.3705E-05	0.69069	0.00032653	0.82544	0.00039023	472.75629572445206	31.266	0.31351	31.005	30.865	31.179	-0.26071					8	5	2	0	0	0	0.51301	1	11432	11432		16.149	1.3108	1	3630300			21866	4789	13802	13880	21011	21011					0.023451771722307058
NEIIITDF	8	Unmodified	_NEIIITDF_					0	0	0		ENSG00000109654|ENST00000338700|TRIM2;nc|ENSG00000109654|Q9C040|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	MULTI-MSMS	HCT116MG_D190212_S2	2	964.4990234375	1	964.498589	963.491313	0.68016	0.00065601	0.020162	1.9446E-05	0.70032	0.00067546	964.4985209958741	55.746	0.25945	55.561	55.431	55.691	-0.18565					11	4	4	0	0	0	0.027354	1	21496	21496		147.06	15.792	1	325930000			21867	2214	13803	13881	21012	21012					0.00810658940713438
NEIIITDF	8	Unmodified	_NEIIITDF_					0	0	0		ENSG00000109654|ENST00000338700|TRIM2;nc|ENSG00000109654|Q9C040|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	MULTI-MSMS	HCT116MG_D190212_S3	3	964.4991455078125	1	964.498589	963.491313	0.69838	0.00067359	0.094323	9.0975E-05	0.7927	0.00076456	964.4985262864222	55.832	0.31596	55.544	55.411	55.727	-0.28773					12	5	3	0	0	0	0.02101	1	21186	21186		152.41	24.047	1	50912000			21868	2214	13803	13881	21013	21013					0.00810658940713438
NEIIITDF	8	Unmodified	_NEIIITDF_					0	0	0		ENSG00000109654|ENST00000338700|TRIM2;nc|ENSG00000109654|Q9C040|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	MULTI-MSMS	HCT116MG_D190212_S4	4	964.4991455078125	1	964.498589	963.491313	0.70432	0.00067931	0.15233	0.00014692	0.85665	0.00082623	964.4985552029225	55.844	0.26045	55.532	55.402	55.663	-0.312					9	4	3	0	0	0	0.038852	1	20927	20927		136.33	7.968	1	18888000			21869	2214	13803	13881	21014	21014					0.00810658940713438
NEIIITDF	8	Unmodified	_NEIIITDF_					0	0	0		ENSG00000109654|ENST00000338700|TRIM2;nc|ENSG00000109654|Q9C040|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	964.498589	963.491313	0.77996	0.00075227	-0.072317	-6.975E-05	0.70764	0.00068252	964.4983432894569	55.528	0.2055	55.528	55.4	55.606	0	-0.013332	-0.00014111	NaN	152.41	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44660000			21870	2214	13803	13881							0.00810658940713438
NEIILRSY	8	Unmodified	_NEIILRSY_					0	0	0			REV__ENST00000395246.5_1_5:130730136-130730241:+|nuORF	REV__ENST00000395246.5_1_5:130730136-130730241:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	504.7411804199219	2	504.279649	1006.54475	0.48232	0.00024323	0.91604	0.00046194	1.3984	0.00070517	504.27942709688534	25.768	0.25874	25.399	25.291	25.55	-0.36914					7	4	2	0	0	0	0.28869	1	9261	9261		12.532	3.1841	1	3647300	+		21871	15346	13804	13882	21015	21015					0.04173456443231771
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S1	1	488.2533264160156	2	487.761289	973.508025	0.27461	0.00013394	-0.10148	-4.95E-05	0.17313	8.4444E-05	487.76119772519814	27.412	0.62238	27.412	27.23	27.852	0					26	11	3	0	0	0	0.0064416	2	9946	9926;9946		125.04	42.508	1	427740000			21872	4945	13805	13883	21016;21017	21017					0.020211598266769215
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S1	1	974.5160522460938	1	974.515302	973.508025	0.62351	0.00060762	0.091488	8.9157E-05	0.715	0.00069678	974.515032129268	27.412	0.41411	27.412	27.282	27.696	0					10	7	2	0	0	0	0.0034381	1	9947	9947		160.69	46.041	1	49499000			21873	4945	13805	13883	21018	21018					0.020211598266769215
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	487.7614440917969	2	487.761289	973.508025	0.21431	0.00010453	-0.1401	-6.8335E-05	0.074209	3.6196E-05	487.76134502499684	27.817	1.0327	27.475	27.191	28.223	-0.34201					53	19	5	0	0	0	0.0051419	2	10100	10100;10335		136.39	43.739	1	2768800000			21874	4945	13805	13883	21019;21020	21019					0.020211598266769215
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	974.5155639648438	1	974.515302	973.508025	0.65328	0.00063663	0.27549	0.00026847	0.92878	0.00090511	974.5152061627805	27.817	0.46282	27.475	27.295	27.758	-0.34201					22	8	4	0	0	0	0.0034381	1	10122	10122		160.69	46.041	1	531680000			21875	4945	13805	13883	21021	21021					0.020211598266769215
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S3	3	487.7613830566406	2	487.761289	973.508025	0.30459	0.00014857	-0.23339	-0.00011384	0.071201	3.4729E-05	487.76140731607273	27.679	1.3539	27.491	27.309	28.663	-0.18847					77	25	6	0	0	0	0.01386	2	9975	9975;10196		103.82	28.063	1	2631200000			21876	4945	13805	13883	21022;21023	21022					0.020211598266769215
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S3	3	974.515869140625	1	974.515302	973.508025	0.72742	0.00070888	0.072727	7.0873E-05	0.80015	0.00077976	974.5151928446164	27.679	0.57217	27.491	27.361	27.933	-0.18847					27	10	4	0	0	0	0.0034381	1	9986	9986		160.69	46.041	1	177440000			21877	4945	13805	13883	21024	21024					0.020211598266769215
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S4	4	488.2546691894531	2	487.761289	973.508025	-0.097642	-4.7626E-05	0.21358	0.00010418	0.11594	5.6549E-05	487.76153868986916	27.901	0.98743	27.58	27.398	28.385	-0.32157					58	18	6	0	0	0	0.0051419	2	10016	9989;10016		136.39	43.739	1	1152300000			21878	4945	13805	13883	21025;21026	21026					0.020211598266769215
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S4	4	974.5159912109375	1	974.515302	973.508025	0.59172	0.00057664	0.13588	0.00013241	0.7276	0.00070906	974.5152850004764	27.902	0.4676	27.581	27.398	27.866	-0.32157					20	8	4	0	0	0	0.0034381	1	10011	10011		160.69	46.041	1	66611000			21879	4945	13805	13883	21027	21027					0.020211598266769215
NEIKPSDPP	9	Unmodified	_NEIKPSDPP_					0	0	0		nc|ENSG00000141446|Q5FWF5-2|ESCO1;ENSG00000141446|ENST00000269214|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	MSMS	HCT116MG_D190212_S2	2	498.75213623046875	2	498.753464	995.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.858	1	27.516	27.016	28.016	-0.34201								0	0	0	0.32687	1	10138	10138		38.176	5.8701	1				21880	3716	13806	13884	21028	21028					-0.0055512669038080276
NEIKPSDPP	9	Unmodified	_NEIKPSDPP_					0	0	0		nc|ENSG00000141446|Q5FWF5-2|ESCO1;ENSG00000141446|ENST00000269214|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	nc|ENSG00000141446|Q5FWF5-2|ESCO1	MSMS	HCT116MG_D190212_S3	3	498.7535095214844	2	498.753464	995.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.798	1	27.609	27.109	28.109	-0.18847								0	0	0	0.32687	1	10033	10033		38.176	9.094	1				21881	3716	13806	13884	21029	21029					-0.0055512669038080276
NEIKVAKA	8	Unmodified	_NEIKVAKA_					0	0	0		nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;ENST00000523504.5_1_8:22880186-22926453:-|nuORF	nc|ENSG00000120889|O14763-2|TNFRSF10B	nc|ENSG00000120889|O14763-2|TNFRSF10B	MSMS	HCT116MG_D190212_S1	1	436.76348876953125	2	436.763635	871.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.281	1	19.281	18.781	19.781	0								0	0	0	0.70963	1	6677	6677		29.841	8.3036	1				21882	2716	13807	13885	21030	21030					0.071820887600893
NEIKVAKA	8	Unmodified	_NEIKVAKA_					0	0	0		nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;ENST00000523504.5_1_8:22880186-22926453:-|nuORF	nc|ENSG00000120889|O14763-2|TNFRSF10B	nc|ENSG00000120889|O14763-2|TNFRSF10B	MULTI-MSMS	HCT116MG_D190212_S2	2	436.763671875	2	436.763635	871.512717	0.012796	5.5887E-06	-0.1251	-5.4638E-05	-0.1123	-4.9049E-05	436.7635921517998	19.907	0.25867	19.532	19.403	19.661	-0.37503					9	4	3	0	0	0	0.095352	1	6954	6954		96.111	37.432	1	22690000			21883	2716	13807	13885	21031	21031					0.071820887600893
NEIKVAKA	8	Unmodified	_NEIKVAKA_					0	0	0		nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;ENST00000523504.5_1_8:22880186-22926453:-|nuORF	nc|ENSG00000120889|O14763-2|TNFRSF10B	nc|ENSG00000120889|O14763-2|TNFRSF10B	MULTI-MSMS	HCT116MG_D190212_S3	3	436.7635192871094	2	436.763635	871.512717	0.15653	6.8368E-05	-0.19114	-8.3483E-05	-0.034606	-1.5115E-05	436.7634682647581	18.767	0.2604	18.836	18.719	18.979	0.069159					6	4	2	0	0	0	0.095352	1	6402	6402		96.111	37.432	1	2930300			21884	2716	13807	13885	21032	21032					0.071820887600893
NEILFEEY	8	Unmodified	_NEILFEEY_					0	0	0		ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6;nc|ENSG00000075089|Q9GZN1-2|ACTR6	ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant	ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1056.48876953125	1	1056.48842	1055.48114	0.61247	0.00064707	-0.3258	-0.0003442	0.28667	0.00030287	1056.4881054321595	54.314	0.25604	54.125	53.996	54.252	-0.1894					10	4	3	0	0	0	0.043218	1	20924	20924		131.27	42.364	1	59104000			21885	31	13808	13886	21033	21033					-0.04437948784516266
NEILFEEY	8	Unmodified	_NEILFEEY_					0	0	0		ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6;nc|ENSG00000075089|Q9GZN1-2|ACTR6	ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant	ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1056.4903564453125	1	1056.48842	1055.48114	0.57995	0.00061271	0.31467	0.00033245	0.89462	0.00094515	1056.4886287615786	54.415	0.26146	54.119	53.981	54.243	-0.29587					11	4	3	0	0	0	0.057078	1	20632	20632		115.69	47.611	1	8817100			21886	31	13808	13886	21034	21034					-0.04437948784516266
NEILFEEY	8	Unmodified	_NEILFEEY_					0	0	0		ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6;nc|ENSG00000075089|Q9GZN1-2|ACTR6	ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant	ACTR6|p.F314Lfs*6|3|0.3|ENSG00000075089|chr12:100220021-100220021|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1056.48974609375	1	1056.48842	1055.48114	0.6726	0.00071059	1.2479	0.0013184	1.9205	0.002029	1056.4893138340894	54.437	0.20854	54.114	53.984	54.192	-0.32349					5	3	2	0	0	0	0.55794	1	20384	20384		36.044	7.5574	1	3480200			21887	31	13808	13886	21035	21035					-0.04437948784516266
NEILVADTY	9	Unmodified	_NEILVADTY_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MSMS	HCT116MG_D190212_S2	2	1037.515625	1	1037.51497	1036.50769	0.90402	0.00093794	-0.029902	-3.1024E-05	0.87412	0.00090692	1037.5148469079734	44.649	0.26268	44.565	44.428	44.691	-0.084801					10	4	3	0	0	0	0.0040527	1	16977	16977		149.91	39.239	1	31449000			21888	1805	13809	13887	21036	21036					-0.00910259893203147
NEILVADTY	9	Unmodified	_NEILVADTY_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MSMS	HCT116MG_D190212_S3	3	1037.5146484375	1	1037.51497	1036.50769	0.73344	0.00076096	-0.32061	-0.00033263	0.41284	0.00042833	1037.5145005817126	44.86	0.28174	44.55	44.451	44.732	-0.30927					9	5	2	0	0	0	0.0063854	1	16786	16786		125.53	36.128	1	11417000			21889	1805	13809	13887	21037	21037					-0.00910259893203147
NEILVADTY	9	Unmodified	_NEILVADTY_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.13916015625	2	519.261122	1036.50769	0.47905	0.00024875	-0.4138	-0.00021487	0.065248	3.3881E-05	519.2609874038841	44.896	0.22977	44.587	44.451	44.68	-0.30927					6	4	2	0	0	0	0.22899	1	16784	16784		18.146	0	1	3698700			21890	1805	13809	13887	21038	21038					-0.00910259893203147
NEILVADTY	9	Unmodified	_NEILVADTY_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MSMS	HCT116MG_D190212_S4	4	519.2617797851562	2	519.261122	1036.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.962	1	44.589	44.089	45.089	-0.37326								0	0	0	0.59795	1	16570	16570		24.021	1.2843	1				21891	1805	13809	13887	21039	21039					-0.00910259893203147
NEINGNWISA	10	Unmodified	_NEINGNWISA_					0	0	0		PDCD4|p.N66Rfs*26|1|0.07|ENSG00000150593|chr10:110881385-110881386|-/GAGAG|frameshift_variant;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	PDCD4|p.N66Rfs*26|1|0.07|ENSG00000150593|chr10:110881385-110881386|-/GAGAG|frameshift_variant	PDCD4|p.N66Rfs*26|1|0.07|ENSG00000150593|chr10:110881385-110881386|-/GAGAG|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	559.2681274414062	2	559.26727	1116.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.12	1	45.807	45.307	46.307	-0.31237								0	0	0	0.78084	1	17287	17287		31.268	18.226	1				21892	4087	13810	13888	21040	21040					-0.033612234301244825
NEIQVVVA	8	Unmodified	_NEIQVVVA_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	HCT116MG_D190212_S2	2	871.4885864257812	1	871.488359	870.481082	0.92508	0.00080619	0.5827	0.00050781	1.5078	0.001314	871.4890108739486	41.427	0.35838	41.359	41.242	41.601	-0.068199					8	6	2	0	0	0	0.052582	2	15675	15611;15675		120.45	7.8572	1	20976000			21893	802	13811	13889	21041;21042	21042					0.040660960061472906
NEIRTSVDP	9	Unmodified	_NEIRTSVDP_					0	0	0			REV__ENST00000491581.5_1_5:141004689-141007494:-|nuORF	REV__ENST00000491581.5_1_5:141004689-141007494:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	515.3187255859375	2	515.76182	1029.50909	0.17913	9.239E-05	0.03235	1.6685E-05	0.21148	0.00010907	515.7615674744502	18.718	0.15593	18.537	18.459	18.615	-0.18052					4	2	2	0	0	0	0.17558	1	6332	6332		27.629	0	1	1171500	+		21894	13356	13812	13890	21043	21043					-0.00448625804438052
NEITGHTY	8	Unmodified	_NEITGHTY_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;ENST00000529977.5_1_11:9164913-9166651:-|nuORF;ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000170456|ENST00000389082|DENND5B;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S1	1	467.71673583984375	2	467.716882	933.41921	0.069697	3.2598E-05	0.031848	1.4896E-05	0.10154	4.7494E-05	467.7168390052912	25.262	0.3129	25.262	25.092	25.405	0					13	5	3	0	0	0	0.064348	1	9068	9068		108	47.607	1	30340000			21895	5132;5754	13813	13891	21044	21044					-0.05016255413011095
NEITGHTY	8	Unmodified	_NEITGHTY_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;ENST00000529977.5_1_11:9164913-9166651:-|nuORF;ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000170456|ENST00000389082|DENND5B;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S1	1	934.427001953125	1	934.426487	933.41921	0.75216	0.00070284	0.85806	0.00080179	1.6102	0.0015046	934.4275176651431	25.243	0.31312	25.243	25.04	25.353	0					7	5	2	0	0	0	0.0065428	1	9095	9095		183.04	111.91	1	4115400			21896	5132;5754	13813	13891	21045	21045					-0.05016255413011095
NEITGHTY	8	Unmodified	_NEITGHTY_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;ENST00000529977.5_1_11:9164913-9166651:-|nuORF;ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000170456|ENST00000389082|DENND5B;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S2	2	467.71661376953125	2	467.716882	933.41921	0.11597	5.4241E-05	0.13364	6.2504E-05	0.2496	0.00011674	467.71683400127534	25.65	0.57206	25.281	25.03	25.602	-0.36914					26	10	4	0	0	0	0.055277	1	9240	9240		117.6	50.255	1	230200000			21897	5132;5754	13813	13891	21046	21046					-0.05016255413011095
NEITGHTY	8	Unmodified	_NEITGHTY_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;ENST00000529977.5_1_11:9164913-9166651:-|nuORF;ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000170456|ENST00000389082|DENND5B;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S2	2	934.4268798828125	1	934.426487	933.41921	0.64143	0.00059937	0.042934	4.0119E-05	0.68436	0.00063948	934.4264512021088	25.686	0.36332	25.317	25.135	25.498	-0.36914					9	6	2	0	0	0	0.024528	1	9264	9264		198.25	109.35	1	54370000			21898	5132;5754	13813	13891	21047	21047					-0.05016255413011095
NEITGHTY	8	Unmodified	_NEITGHTY_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;ENST00000529977.5_1_11:9164913-9166651:-|nuORF;ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000170456|ENST00000389082|DENND5B;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S3	3	467.716796875	2	467.716882	933.41921	0.36276	0.00016967	-0.15856	-7.416E-05	0.20421	9.5511E-05	467.716742573233	25.437	0.46803	25.33	25.1	25.568	-0.10618					22	8	4	0	0	0	0.055277	1	9062	9062		117.6	50.255	1	107290000			21899	5132;5754	13813	13891	21048	21048					-0.05016255413011095
NEITGHTY	8	Unmodified	_NEITGHTY_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;ENST00000529977.5_1_11:9164913-9166651:-|nuORF;ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000170456|ENST00000389082|DENND5B;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S3	3	934.427001953125	1	934.426487	933.41921	0.85849	0.00080219	-0.069384	-6.4835E-05	0.7891	0.00073736	934.4262532520975	25.44	0.31182	25.334	25.152	25.464	-0.10618					8	5	2	0	0	0	0.024528	1	9085	9085		198.25	120.1	1	13858000			21900	5132;5754	13813	13891	21049	21049					-0.05016255413011095
NEITGHTY	8	Unmodified	_NEITGHTY_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;ENST00000529977.5_1_11:9164913-9166651:-|nuORF;ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000170456|ENST00000389082|DENND5B;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S4	4	467.71697998046875	2	467.716882	933.41921	0.09063	4.2389E-05	-0.00097461	-4.5584E-07	0.089655	4.1933E-05	467.71682113500464	25.676	0.36419	25.386	25.204	25.568	-0.29022					16	6	4	0	0	0	0.055277	1	9099	9099		117.6	57.209	1	27697000			21901	5132;5754	13813	13891	21050	21050					-0.05016255413011095
NEITGHTY	8	Unmodified	_NEITGHTY_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;ENST00000529977.5_1_11:9164913-9166651:-|nuORF;ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A	ENSG00000170456|ENST00000389082|DENND5B;ENSG00000184014|ENST00000328194|DENND5A	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S4	4	934.4273681640625	1	934.426487	933.41921	0.77391	0.00072316	0.48782	0.00045583	1.2617	0.001179	934.4268883174586	25.676	0.31221	25.386	25.255	25.568	-0.29022					6	5	2	0	0	0	0.024528	1	9118	9118		198.25	123.83	1	4226300			21902	5132;5754	13813	13891	21051	21051					-0.05016255413011095
NEITIPVTF	9	Unmodified	_NEITIPVTF_					0	0	0		ENST00000423240.1_1_9:74622799-74623024:-|nuORF;ENSG00000106211|ENST00000248553|HSPB1	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1033.5570068359375	1	1033.55644	1032.54916	0.60386	0.00062412	-0.047531	-4.9126E-05	0.55633	0.000575	1033.5565759273593	56.364	0.20726	56.182	56.052	56.259	-0.18261					11	3	4	0	0	0	0.0043772	1	21749	21749		145.13	30.481	1	128680000			21903	2063	13814	13892	21052	21052					0.034189208661246084
NEITIPVTF	9	Unmodified	_NEITIPVTF_					0	0	0		ENST00000423240.1_1_9:74622799-74623024:-|nuORF;ENSG00000106211|ENST00000248553|HSPB1	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	517.281982421875	2	517.281857	1032.54916	0.36039	0.00018643	0.50501	0.00026123	0.8654	0.00044766	517.2818122509849	56.354	0.25953	56.172	56.052	56.312	-0.18261					12	4	4	0	0	0	0.010834	2	21771	21756;21771		111.29	46.052	1	60148000			21904	2063	13814	13892	21053;21054	21054					0.034189208661246084
NEITIPVTF	9	Unmodified	_NEITIPVTF_					0	0	0		ENST00000423240.1_1_9:74622799-74623024:-|nuORF;ENSG00000106211|ENST00000248553|HSPB1	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	517.2821044921875	2	517.281857	1032.54916	0.37336	0.00019313	0.43787	0.0002265	0.81123	0.00041964	517.2819723683224	56.46	0.15739	56.176	56.097	56.255	-0.28367					6	2	3	0	0	0	0.11023	1	21461	21461		56.177	16.227	1	4402200			21905	2063	13814	13892	21055	21055					0.034189208661246084
NEITIPVTF	9	Unmodified	_NEITIPVTF_					0	0	0		ENST00000423240.1_1_9:74622799-74623024:-|nuORF;ENSG00000106211|ENST00000248553|HSPB1	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1033.55644	1032.54916	0.67371	0.00069631	-0.097088	-0.00010035	0.57662	0.00059597	1033.556320591474	56.46	0.15739	56.176	56.097	56.255	-0.28367	-0.018656	1.0157E-06	NaN	145.13	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4762500			21906	2063	13814	13892							0.034189208661246084
NEITIPVTF	9	Unmodified	_NEITIPVTF_					0	0	0		ENST00000423240.1_1_9:74622799-74623024:-|nuORF;ENSG00000106211|ENST00000248553|HSPB1	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENST00000423240.1_1_9:74622799-74623024:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1033.55644	1032.54916	0.76659	0.00079231	-0.71458	-0.00073856	0.052005	5.375E-05	1033.55534485273	56.533	0.1573	56.226	56.095	56.252	-0.30626	0.031622	-0.0006372	NaN	145.13	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2388900			21907	2063	13814	13892							0.034189208661246084
NEIVTQIDA	9	Unmodified	_NEIVTQIDA_					0	0	0		ENSG00000177879|ENST00000316788|AP3S1	ENSG00000177879|ENST00000316788|AP3S1	ENSG00000177879|ENST00000316788|AP3S1	MULTI-MSMS	HCT116MG_D190212_S3	3	501.759033203125	2	501.758746	1001.50294	0.4038	0.00020261	0.22403	0.00011241	0.62783	0.00031502	501.75867389364043	39.043	0.31452	38.742	38.664	38.979	-0.30137					6	5	2	0	0	0	0.29516	1	14513	14513		31.268	5.0002	1	2999400			21908	5476	13815	13893	21056	21056					0.002248559640520398
NEIVVTDF	8	Unmodified	_NEIVVTDF_					0	0	0		ENST00000530724.1_1_11:6471537-6472266:-|nuORF;nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	936.4676513671875	1	936.467289	935.460012	0.69362	0.00064955	-0.089036	-8.338E-05	0.60458	0.00056617	936.4672313890055	50.548	0.20583	50.548	50.42	50.626	0					5	3	2	0	0	0	0.13347	1	19306	19306		71.922	6.6873	1	9955300			21909	2238	13816	13894	21057	21057					-0.010299140933625495
NEIVVTDF	8	Unmodified	_NEIVVTDF_					0	0	0		ENST00000530724.1_1_11:6471537-6472266:-|nuORF;nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	936.4688720703125	1	936.467289	935.460012	0.68949	0.00064568	0.19237	0.00018015	0.88186	0.00082584	936.4674694844095	50.704	0.3617	50.532	50.403	50.765	-0.1719					13	6	3	0	0	0	0.0082805	1	19442	19442		166.45	22.098	1	74915000			21910	2238	13816	13894	21058	21058					-0.010299140933625495
NEIVVTDF	8	Unmodified	_NEIVVTDF_					0	0	0		ENST00000530724.1_1_11:6471537-6472266:-|nuORF;nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	936.4677734375	1	936.467289	935.460012	0.63307	0.00059285	0.053215	4.9834E-05	0.68628	0.00064268	936.4671456491398	50.929	0.36475	50.615	50.438	50.803	-0.31381					14	6	3	0	0	0	0.0029202	1	19200	19200		174.73	22.315	1	18828000			21911	2238	13816	13894	21059	21059					-0.010299140933625495
NEIVVTDF	8	Unmodified	_NEIVVTDF_					0	0	0		ENST00000530724.1_1_11:6471537-6472266:-|nuORF;nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	936.4671630859375	1	936.467289	935.460012	0.61675	0.00057757	-0.075762	-7.0948E-05	0.54099	0.00050662	936.4672704021274	50.953	0.30899	50.599	50.42	50.729	-0.35483					10	5	2	0	0	0	0.045718	1	18947	18947		128.37	20.368	1	6118800			21912	2238	13816	13894	21060	21060					-0.010299140933625495
NEKAWFQTP	9	Unmodified	_NEKAWFQTP_					0	0	0		ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172352|ENST00000382407|CDY1B;ENSG00000172288|ENST00000306609|CDY1;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL;ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000182415|ENST00000250838|CDY2A;ENSG00000153046|ENST00000397588|CDYL	ENSG00000182415|ENST00000250838|CDY2A	MULTI-SECPEP	HCT116MG_D190212_S1	1	560.3291015625	2	560.774731	1119.53491	0.29961	0.00016802	-0.10713	-6.0078E-05	0.19248	0.00010794	560.774779697086	44.542	0.21023	44.542	44.41	44.621	0					5	3	2	0	0	0	0.19551	1	16849	16849		34.102	18.255	1	13141000			21913	3046;4173	13817	13895	21061	21061					-0.020077315621620073
NEKAWFQTP	9	Unmodified	_NEKAWFQTP_					0	0	0		ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172352|ENST00000382407|CDY1B;ENSG00000172288|ENST00000306609|CDY1;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL;ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000182415|ENST00000250838|CDY2A;ENSG00000153046|ENST00000397588|CDYL	ENSG00000182415|ENST00000250838|CDY2A	MULTI-MSMS	HCT116MG_D190212_S2	2	560.7755737304688	2	560.774731	1119.53491	0.54055	0.00030313	-0.034509	-1.9352E-05	0.50604	0.00028377	560.774727362681	44.519	0.31355	44.435	44.274	44.588	-0.084797					13	5	4	0	0	0	0.0040527	1	16906	16906		149.91	93.737	1	55382000			21914	3046;4173	13817	13895	21062	21062					-0.020077315621620073
NEKAWFQTP	9	Unmodified	_NEKAWFQTP_					0	0	0		ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172352|ENST00000382407|CDY1B;ENSG00000172288|ENST00000306609|CDY1;nc|ENSG00000153046|Q9Y232-3|CDYL;ENST00000472453.5_1_6:4776866-4954287:+|nuORF;nc|ENSG00000153046|Q9Y232-4|CDYL;ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000182415|ENST00000250838|CDY2A;ENSG00000153046|ENST00000397588|CDYL	ENSG00000182415|ENST00000250838|CDY2A	MSMS	HCT116MG_D190212_S3	3	560.7747192382812	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.837	1	44.527	44.027	45.027	-0.30927								0	0	0	0.22243	1	16770	16770		45.74	12.954	1				21915	3046;4173	13817	13895	21063	21063					-0.020077315621620073
NEKDINAVA	9	Unmodified	_NEKDINAVA_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S1	1	487.2508850097656	2	487.251089	972.487624	0.22558	0.00010991	-0.0033969	-1.6551E-06	0.22218	0.00010826	487.25101511944416	23.236	0.26035	23.236	23.054	23.314	0					6	4	2	0	0	0	0.034046	1	8277	8277		82.529	13.424	1	6337300			21916	9390	13818	13896	21064	21064					0.0002798916684696451
NEKDINAVA	9	Unmodified	_NEKDINAVA_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S2	2	487.2510986328125	2	487.251089	972.487624	0.21308	0.00010383	-0.16209	-7.8977E-05	0.050997	2.4848E-05	487.2508875316804	23.657	0.31239	23.274	23.143	23.456	-0.38324					11	5	3	0	0	0	0.11023	1	8464	8464		56.177	0	1	31664000			21917	9390	13818	13896	21065	21065					0.0002798916684696451
NEKDINAVA	9	Unmodified	_NEKDINAVA_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	HCT116MG_D190212_S3	3	487.2509460449219	2	487.251089	972.487624	0.10529	5.1301E-05	-0.096578	-4.7058E-05	0.0087077	4.2429E-06	487.25094140750883	23.186	0.26065	23.146	22.979	23.239	-0.03968					7	4	2	0	0	0	0.016701	1	8183	8183		99.799	24.87	1	6956600			21918	9390	13818	13896	21066	21066					0.0002798916684696451
NEKDINAVA	9	Unmodified	_NEKDINAVA_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1;BZW1|p.S325Rfs*19|1|0.04|ENSG00000082153|chr2:200819989-200819990|-/ACAATATAGAA|frameshift_variant;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;BZW1|p.N286*|1|0.04|ENSG00000082153|chr2:200818790-200818791|-/T|frameshift_variant;BZW1|p.N285Tfs*11|2|0.26|ENSG00000082153|chr2:200818782-200818782|A/-|frameshift_variant;nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	487.251089	972.487624	-0.23696	-0.00011546	-0.37508	-0.00018276	-0.61204	-0.00029822	487.2509184599551	23.441	0.26016	23.194	23.063	23.324	-0.24775	-0.018674	-0.00024705	NaN	99.799	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2551700			21919	9390	13818	13896							0.0002798916684696451
NEKEGFPIT	9	Unmodified	_NEKEGFPIT_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;CDK13|p.K911Nfs*13|1|0.17|ENSG00000065883|chr7:40063048-40063048|A/-|frameshift_variant;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7618408203125	2	517.761289	1033.50803	0.4941	0.00025582	0.31414	0.00016265	0.80824	0.00041847	517.7614176756025	36.261	0.56983	36.133	35.864	36.434	-0.12799					18	10	2	0	0	0	0.28785	1	13550	13550		32.037	2.1969	1	23944000			21920	9470;390	13819	13897	21067	21067					-0.007388401733351202
NEKEGFPIT	9	Unmodified	_NEKEGFPIT_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;CDK13|p.K911Nfs*13|1|0.17|ENSG00000065883|chr7:40063048-40063048|A/-|frameshift_variant;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	MULTI-MSMS	HCT116MG_D190212_S3	3	517.7616577148438	2	517.761289	1033.50803	0.022745	1.1776E-05	0.29924	0.00015494	0.32199	0.00016671	517.7614838085013	36.395	0.57227	36.094	35.885	36.458	-0.30079					22	10	3	0	0	0	0.012531	1	13439	13439		107.1	47.026	1	8111300			21921	9470;390	13819	13897	21068	21068					-0.007388401733351202
NEKEGFPIT	9	Unmodified	_NEKEGFPIT_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;CDK13|p.K911Nfs*13|1|0.17|ENSG00000065883|chr7:40063048-40063048|A/-|frameshift_variant;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	MULTI-MSMS	HCT116MG_D190212_S4	4	517.7611083984375	2	517.761289	1033.50803	0.35958	0.00018618	-0.67425	-0.0003491	-0.31467	-0.00016292	517.7607676206009	36.589	0.46448	36.204	35.919	36.383	-0.38486					14	8	2	0	0	0	0.26031	1	13388	13388		34.932	3.6637	1	3533700			21922	9470;390	13819	13897	21069	21069					-0.007388401733351202
NEKEGFPIT	9	Unmodified	_NEKEGFPIT_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;CDK13|p.K911Nfs*13|1|0.17|ENSG00000065883|chr7:40063048-40063048|A/-|frameshift_variant;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	517.761289	1033.50803	0.4941	0.00025582	0.31414	0.00016265	0.80824	0.00041847	517.7614176756025	36.261	0.56983	36.133	35.864	36.434	-0.12799	-0.020413	8.8215E-05	NaN	107.1	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23944000			21923	9470;390	13819	13897							-0.007388401733351202
NEKEGFPITA	10	Unmodified	_NEKEGFPITA_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;CDK13|p.K911Nfs*13|1|0.17|ENSG00000065883|chr7:40063048-40063048|A/-|frameshift_variant;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2805786132812	2	553.279846	1104.54514	0.26053	0.00014415	0.74142	0.00041021	1.002	0.00055436	553.2800411652463	38.718	0.47224	38.633	38.437	38.909	-0.084618					12	8	3	0	0	0	0.24695	1	14577	14577		55.235	28.967	1	14967000			21924	9470;390	13820	13898	21070	21070					-0.0029516862757645868
NEKEGVQY	8	Unmodified	_NEKEGVQY_					0	0	0		nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	MSMS	HCT116MG_D190212_S2	2	483.72979736328125	2	483.729989	965.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.315	1	22.93	22.43	23.43	-0.3852								0	0	0	0.16719	1	8303	8303		71.922	24.174	1				21925	3215	13821	13899	21071	21071					-0.03867986241516519
NEKEGVQY	8	Unmodified	_NEKEGVQY_					0	0	0		nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	MULTI-MSMS	HCT116MG_D190212_S3	3	483.7300109863281	2	483.729989	965.445425	0.11422	5.525E-05	-0.61116	-0.00029564	-0.49694	-0.00024039	483.7299492875339	22.677	0.20791	22.658	22.543	22.751	-0.018869					6	3	2	0	0	0	0.094591	1	7983	7983		96.285	20.524	1	2071200			21926	3215	13821	13899	21072	21072					-0.03867986241516519
NEKEGVQY	8	Unmodified	_NEKEGVQY_					0	0	0		nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	483.729989	965.445425	0.19722	9.5403E-05	-0.64444	-0.00031173	-0.44721	-0.00021633	483.7296012225985	22.75	0.20852	22.75	22.637	22.845	0	0.046177	-8.0338E-06	NaN	96.285	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3097300			21927	3215	13821	13899							-0.03867986241516519
NEKEVKEY	8	Unmodified	_NEKEVKEY_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-5|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;ENST00000517534.5_1_5:138163374-138223382:+|nuORF	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7587280273438	2	519.758746	1037.50294	0.20851	0.00010837	-0.027529	-1.4309E-05	0.18098	9.4066E-05	519.7586778530402	18.089	0.36532	17.732	17.597	17.963	-0.35647					11	6	3	0	0	0	0.426	1	6217	6217		47.732	7.7747	1	12505000			21928	1019	13822	13900	21073	21073					-0.014311440359506378
NEKPAAVVA	9	Unmodified	_NEKPAAVVA_					0	0	0		nc|ENSG00000116161|Q9HB71-2|CACYBP;CACYBP|p.V145Sfs*22|1|0.25|ENSG00000116161|chr1:175007191-175007191|A/-|frameshift_variant;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENST00000483307.1_1_1:174969088-174974127:+|nuORF;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	nc|ENSG00000116161|Q9HB71-2|CACYBP	nc|ENSG00000116161|Q9HB71-2|CACYBP	MULTI-MSMS	HCT116MG_D190212_S1	1	449.753173828125	2	449.753267	897.491981	0.055366	2.4901E-05	-0.11868	-5.3378E-05	-0.063317	-2.8477E-05	449.75315220456133	22.872	0.31257	22.872	22.741	23.054	0					8	5	2	0	0	0	0.047849	1	8126	8126		75.761	19.584	1	7161600			21929	311	13823	13901	21074	21074					0.039134983804160584
NEKPAAVVA	9	Unmodified	_NEKPAAVVA_					0	0	0		nc|ENSG00000116161|Q9HB71-2|CACYBP;CACYBP|p.V145Sfs*22|1|0.25|ENSG00000116161|chr1:175007191-175007191|A/-|frameshift_variant;nc|ENSG00000116161|Q9HB71-3|CACYBP;ENST00000483307.1_1_1:174969088-174974127:+|nuORF;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	nc|ENSG00000116161|Q9HB71-2|CACYBP	nc|ENSG00000116161|Q9HB71-2|CACYBP	MULTI-MSMS	HCT116MG_D190212_S2	2	449.7533264160156	2	449.753267	897.491981	0.08252	3.7114E-05	0.099883	4.4923E-05	0.1824	8.2037E-05	449.75319125749405	23.382	0.25909	22.997	22.83	23.089	-0.3852					8	4	2	0	0	0	0.030723	1	8338	8338		85.642	14.508	1	23372000			21930	311	13823	13901	21075	21075					0.039134983804160584
NEKQQHKLQEW	11	Unmodified	_NEKQQHKLQEW_					0	0	0		KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant;KIF27|p.K1223Tfs*2|1|0.11|ENSG00000165115|chr9:83842289-83842290|TT/-|frameshift_variant;nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27	KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant	KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	734.371337890625	2	734.370589	1466.72663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.298	1	42.993	42.493	43.493	-0.30472								0	0	0	0.95731	1	16152	16152		2.4985	0	1				21931	4749	13824	13902	21076	21076					0.011931443981893608
NEKTALLTI	9	Unmodified	_NEKTALLTI_					0	0	0			REV__tr|U7T5J2|U7T5J2_FUSNUPhagetailproteinIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00077PE=4SV=1	REV__tr|U7T5J2|U7T5J2_FUSNUPhagetailproteinIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00077PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	501.7952880859375	2	501.795132	1001.57571	0.37548	0.00018841	0.52236	0.00026212	0.89784	0.00045053	501.7955814942001	41.143	0.20846	41.143	41.029	41.237	0					5	3	2	0	0	0	0.19273	1	15504	15504		36.127	0	1	10909000	+		21932	17985	13825	13903	21077	21077					0.07498609757476515
NELDQKKVKY	10	Unmodified	_NELDQKKVKY_					0	0	0		ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	MULTI-MSMS	HCT116MG_D190212_S2	2	422.88885498046875	3	422.23471	1263.6823	0.14775	6.2385E-05	-0.46965	-0.0001983	-0.3219	-0.00013592	422.2344208364525	22.187	0.31238	21.802	21.583	21.896	-0.38515					6	5	2	0	0	0	0.10753	2	7843	7843;7872		72.59	40.954	1	8256000			21933	1761	13826	13904	21078;21079	21078					0.06100740251986281
NELDQKKVKY	10	Unmodified	_NELDQKKVKY_					0	0	0		ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	ENSG00000101193|ENST00000266069|GID8	MSMS	HCT116MG_D190212_S2	2	632.8485107421875	2	632.848427	1263.6823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.272	1	21.887	21.387	22.387	-0.3852								0	0	0	0.89275	1	7881	7881		18.721	4.3158	1				21934	1761	13826	13904	21080	21080					0.06100740251986281
NELEHLQY	8	Unmodified	_NELEHLQY_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;BBS7|p.K355Q|1|0.4|ENSG00000138686|chr4:121845671-121845671|T/G|missense_variant	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-MSMS	HCT116MG_D190212_S1	1	523.2514038085938	2	523.251089	1044.48762	0.18339	9.5957E-05	-0.1315	-6.8808E-05	0.051884	2.7149E-05	523.2511571754726	37.856	0.31261	37.856	37.655	37.968	0					8	5	2	0	0	0	0.094232	1	14177	14177		96.367	48.021	1	8060400			21935	3577	13827	13905	21081	21081					-0.03284010833135653
NELEHLQY	8	Unmodified	_NELEHLQY_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;BBS7|p.K355Q|1|0.4|ENSG00000138686|chr4:121845671-121845671|T/G|missense_variant	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2514038085938	2	523.251089	1044.48762	0.14582	7.63E-05	-0.047549	-2.488E-05	0.098271	5.142E-05	523.251037484044	37.924	0.25736	37.831	37.651	37.908	-0.09301					7	4	2	0	0	0	0.51345	1	14262	14262		39.95	10.868	1	18300000			21936	3577	13827	13905	21082	21082					-0.03284010833135653
NELEKQLRYNE	11	Unmodified	_NELEKQLRYNE_					0	0	0			REV__tr|U7T2G2|U7T2G2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00439PE=4SV=1	REV__tr|U7T2G2|U7T2G2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00439PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	718.3646850585938	2	718.36243	1434.71031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.748	1	42.748	42.248	43.248	0								0	0	0	0.94942	1	16132	16132		6.6304	0	1		+		21937	17922	13828	13906	21083	21083					0.010340184414189935
NELESDLTF	9	Unmodified	_NELESDLTF_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2474975585938	2	534.248212	1066.48187	0.63454	0.000339	-0.68061	-0.00036361	-0.04607	-2.4613E-05	534.2477209413805	53.346	0.26115	53.043	52.931	53.192	-0.30304					7	4	2	0	0	0	0.35842	1	20215	20215		24.991	8.8419	1	1710800			21938	5571	13829	13907	21084	21084					-0.04871154135480538
NELFNSIPFGM	11	Unmodified	_NELFNSIPFGM_					0	0	0			REV__tr|U7STA3|U7STA3_FUSNUdTTP/UTPpyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01343PE=3SV=1	REV__tr|U7STA3|U7STA3_FUSNUdTTP/UTPpyrophosphataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01343PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	634.8023071289062	2	634.802631	1267.59071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.48	1	53.291	52.791	53.791	-0.1894								0	0	0	0.93882	1	20568	20568		12.175	1.3752	1		+		21939	17788	13830	13908	21085	21085					-0.03238266436869708
NELGIKELY	9	Unmodified	_NELGIKELY_					0	0	0		COBL|p.A302Nfs*28|1|0.06|ENSG00000106078|chr7:51136211-51136212|-/AAGTATT|frameshift_variant;nc|ENSG00000106078|O75128-5|COBL;nc|ENSG00000106078|O75128-4|COBL;COBL|p.Q983Rfs*82|1|0.44|ENSG00000106078|chr7:51028148-51028148|T/-|frameshift_variant;COBL|p.E953Rfs*112|1|0.24|ENSG00000106078|chr7:51028239-51028239|C/-|frameshift_variant;COBL|p.K1094Nfs*20|1|0.24|ENSG00000106078|chr7:51027814-51027814|T/-|frameshift_variant;nc|ENSG00000106078|O75128-3|COBL;COBL|p.R1238Gfs*4|1|0.12|ENSG00000106078|chr7:51025165-51025165|T/-|frameshift_variant;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL;ENST00000443421.1_1_X:118072328-118072745:+|nuORF	COBL|p.A302Nfs*28|1|0.06|ENSG00000106078|chr7:51136211-51136212|-/AAGTATT|frameshift_variant	COBL|p.A302Nfs*28|1|0.06|ENSG00000106078|chr7:51136211-51136212|-/AAGTATT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7932739257812	2	539.792589	1077.57063	0.69139	0.00037321	-0.17675	-9.5408E-05	0.51464	0.0002778	539.7924193659288	44.839	0.31148	44.754	44.535	44.846	-0.084797					8	5	2	0	0	0	0.27446	1	17059	17059		33.445	0	1	16176000			21940	508	13831	13909	21086	21086					0.03494305894855643
NELHRRDG	8	Unmodified	_NELHRRDG_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|3|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|3|1|sense	MULTI-MSMS	HCT116MG_D190212_S4	4	498.7527160644531	2	498.752121	995.48969	0.45456	0.00022671	0.62249	0.00031047	1.077	0.00053718	498.75231721352117	27.953	0.41566	27.632	27.45	27.866	-0.32157					11	7	2	0	0	0	0.557	1	10015	10015		36.127	5.4905	1	16706000	+		21941	16956	13832	13910	21087	21087					-0.008235373046659333
NELHRRDG	8	Unmodified	_NELHRRDG_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|3|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|3|1|sense	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	498.752121	995.48969	0.36195	0.00018052	0.59129	0.00029491	0.95324	0.00047543	498.75216194471716	27.412	0.20763	27.412	27.282	27.49	0	-0.10991	-2.3385E-05	NaN	36.127	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12763000	+		21942	16956	13832	13910							-0.008235373046659333
NELHSVHDA	9	Unmodified	_NELHSVHDA_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	HCT116MG_D190212_S3	3	511.2394104003906	2	511.238513	1020.46247	0.21429	0.00010955	1.0833	0.00055383	1.2976	0.00066338	511.2391824959961	27.887	0.25989	27.699	27.569	27.829	-0.18847					7	4	2	0	0	0	0.39784	1	10103	10103		22.736	2.3217	1	3213800	+		21943	11352	13833	13911	21088	21088					-0.046940656357151056
NELHSVHDA	9	Unmodified	_NELHSVHDA_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-MATCH	HCT116MG_D190212_S2	2		2	511.238513	1020.46247	0.30287	0.00015484	-0.11858	-6.0625E-05	0.18428	9.4213E-05	511.23847215055207	28.023	0.15551	27.693	27.615	27.77	-0.32987	-0.0030307	-0.00078125	NaN	22.736	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8574400	+		21944	11352	13833	13911							-0.046940656357151056
NELIIPCIHL	10	Unmodified	_NELIIPCIHL_					0	0	0		ENST00000540438.5_1_11:113669964-113691034:-|nuORF;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	MSMS	HCT116MG_D190212_S2	2	582.8242797851562	2	582.825909	1163.63727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.898	1	55.712	55.212	56.212	-0.18565								0	0	0	0.65393	1	21557	21557		39.95	9.3132	1				21945	1032	13834	13912	21089	21089					0.06199218185111022
NELILKTL	8	Unmodified	_NELILKTL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	HCT116MG_D190212_S1	1	472.29522705078125	2	472.294768	942.574983	0.042993	2.0305E-05	0.24441	0.00011544	0.28741	0.00013574	472.2948980742184	48.126	0.25805	48.126	47.996	48.254	0					6	4	2	0	0	0	0.31597	1	18322	18322		57.722	12.022	1	6325500			21946	3791	13835	13913	21090	21090					0.10139815108436778
NELILKTL	8	Unmodified	_NELILKTL_					0	0	0		ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	ENSG00000143179|ENST00000367879|UCK2	MULTI-MSMS	HCT116MG_D190212_S3	3	472.29486083984375	2	472.294768	942.574983	0.37609	0.00017762	-0.17271	-8.157E-05	0.20338	9.6053E-05	472.29460657299717	48.43	0.26043	48.114	47.932	48.192	-0.31596					6	4	2	0	0	0	0.09174	1	18219	18219		96.936	29.097	1	9162100			21947	3791	13835	13913	21091	21091					0.10139815108436778
NELITNAL	8	Unmodified	_NELITNAL_					0	0	0		nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;ENSG00000079459|ENST00000220584|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-5|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	nc|ENSG00000079459|P37268-4|FDFT1	MULTI-MSMS	HCT116MG_D190212_S3	3	887.4834594726562	1	887.483273	886.475997	0.99027	0.00087885	-1.2028	-0.0010674	-0.21248	-0.00018858	887.4821035756682	48.43	0.26043	48.114	47.932	48.192	-0.31596					7	4	2	0	0	0	0.11121	1	18217	18217		92.491	10.878	1	10513000			21948	1382	13836	13914	21092	21092					0.028217921435157223
NELKDYSEFKT	11	Unmodified	_NELKDYSEFKT_					0	0	0		tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	tr|U7SRZ8|U7SRZ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01488PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	687.3311767578125	2	687.332807	1372.65106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.779	1	27.59	27.09	28.09	-0.18847								0	0	0	0.45361	1	10026	10026		49.554	19.714	1				21949	18406	13837	13915	21093	21093					-0.020358775727800094
NELKEKRK	8	Unmodified	_NELKEKRK_					0	0	0			REV__ATP4A|p.E523Sfs*49|1|0.09|ENSG00000105675|chr19:35557782-35557782|G/-|frameshift_variant	REV__ATP4A|p.E523Sfs*49|1|0.09|ENSG00000105675|chr19:35557782-35557782|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1044.6158447265625	1	1044.61602	1043.60874	0.91197	0.00095265	0.054179	5.6596E-05	0.96615	0.0010093	1044.6155249607957	52.055	0.92751	51.872	51.218	52.145	-0.18368					20	17	2	0	0	0	0.8698	1	19933	19933		1.8442	0	1	11089000	+		21950	10009	13838	13916	21094	21094					0.08868236600187629
NELKFHYM	8	Unmodified	_NELKFHYM_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MSMS	HCT116MG_D190212_S1	1	541.2598266601562	2	541.260402	1080.50625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.531	1	38.531	38.031	39.031	0								0	0	0	0.55681	1	14428	14428		39.957	16.809	1				21951	4925	13839	13917	21095	21095					-0.030781724629378004
NELKFHYM	8	Unmodified	_NELKFHYM_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	541.2606201171875	2	541.260402	1080.50625	0.42993	0.00023271	-0.041724	-2.2583E-05	0.38821	0.00021012	541.2603638463756	38.441	0.31678	38.348	38.167	38.483	-0.09301					11	5	3	0	0	0	0.0044015	1	14446	14446		181.33	130.47	1	76651000			21952	4925	13839	13917	21096	21096					-0.030781724629378004
NELKFHYM	8	Unmodified	_NELKFHYM_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	541.2611083984375	2	541.260402	1080.50625	0.33281	0.00018013	-0.48753	-0.00026388	-0.15473	-8.3748E-05	541.2602601213255	38.694	0.67564	38.393	37.937	38.613	-0.30137					16	12	2	0	0	0	0.036435	1	14355	14355		139.14	88.283	1	13527000			21953	4925	13839	13917	21097	21097					-0.030781724629378004
NELLERVT	8	Unmodified	_NELLERVT_					0	0	0			REV__nc|ENSG00000137076|Q9Y490-2|TLN1	REV__nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	487.2693786621094	2	487.269281	972.52401	0.34713	0.00016915	-0.076448	-3.7251E-05	0.27068	0.0001319	487.26919309626425	24.436	0.2082	24.056	23.926	24.135	-0.38003					5	3	2	0	0	0	0.69106	1	8786	8786		24.021	0.23079	1	9119200	+		21954	12161	13840	13918	21098	21098					0.03664866063570571
NELLERVT	8	Unmodified	_NELLERVT_					0	0	0			REV__nc|ENSG00000137076|Q9Y490-2|TLN1	REV__nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	487.269281	972.52401	0.30106	0.0001467	-0.48978	-0.00023866	-0.18872	-9.1958E-05	487.26921783063995	23.924	0.20914	23.924	23.784	23.993	0	-0.066284	-0.00038996	NaN	24.021	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4389800	+		21955	12161	13840	13918							0.03664866063570571
NELLPLHND	9	Unmodified	_NELLPLHND_					0	0	0			REV__ENSG00000087502|ENST00000360150|ERGIC2	REV__ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MSMS	HCT116MG_D190212_S1	1	532.77197265625	2	532.772188	1063.52982	0.10711	5.7064E-05	-0.63105	-0.00033621	-0.52394	-0.00027914	532.7720123201569	40.167	0.25902	40.167	40.021	40.28	0					7	4	2	0	0	0	0.15273	1	15132	15132		47.749	7.5095	1	9025300	+		21956	10952	13841	13919	21099	21099					0.0005996457523451681
NELLPLHND	9	Unmodified	_NELLPLHND_					0	0	0			REV__ENSG00000087502|ENST00000360150|ERGIC2	REV__ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	532.772188	1063.52982	0.10711	5.7064E-05	-0.63105	-0.00033621	-0.52394	-0.00027914	532.7720123201569	40.167	0.25902	40.167	40.021	40.28	0	0.0067876	9.9827E-05	NaN	47.749	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9025300	+		21957	10952	13841	13919							0.0005996457523451681
NELLQTEK	8	Unmodified	_NELLQTEK_					0	0	0		FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant;ENSG00000102302|ENST00000375135|FGD1	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	FGD1|p.P859Lfs*4|1|0.34|ENSG00000102302|chrX:54447315-54447315|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	487.4234619140625	2	487.761289	973.508025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.481	1	29.245	28.745	29.745	-0.23655								0	0	0	0.8837	1	10712	10712		14.838	0	1				21958	1834	13842	13920	21100	21100					0.02021159826665553
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	564.3146362304688	2	564.314023	1126.61349	0.30474	0.00017197	-0.074857	-4.2243E-05	0.22988	0.00012972	564.3139252997811	42.143	0.31197	42.143	41.966	42.278	0					11	5	3	0	0	0	0.0015154	1	15877	15877		189.73	100.78	1	72112000			21959	2017	13843	13921	21101	21101					0.055251207429591886
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	376.545166015625	3	376.545108	1126.61349	-0.18554	-6.9865E-05	-0.33697	-0.00012688	-0.52251	-0.00019675	376.5449397616694	42.115	0.26011	42.115	41.966	42.226	0					7	4	2	0	0	0	0.13316	1	15886	15886		40.725	21.363	1	36543000			21960	2017	13843	13921	21102	21102					0.055251207429591886
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	376.5450744628906	3	376.545108	1126.61349	-0.18345	-6.9076E-05	0.36476	0.00013735	0.18131	6.8272E-05	376.5451950248753	42.11	0.31204	42.042	41.808	42.12	-0.068199					16	5	4	0	0	0	0.13316	1	15915	15915		40.725	15.843	1	163510000			21961	2017	13843	13921	21103	21103					0.055251207429591886
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	564.3143310546875	2	564.314023	1126.61349	0.44747	0.00025252	0.31165	0.00017587	0.75913	0.00042839	564.3141439416903	42.058	0.36212	41.99	41.861	42.223	-0.068199					21	6	5	0	0	0	0.0015154	1	15932	15932		189.73	100.78	1	294120000			21962	2017	13843	13921	21104	21104					0.055251207429591886
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	564.3134765625	2	564.314023	1126.61349	0.48093	0.0002714	-0.084435	-4.7648E-05	0.3965	0.00022375	564.3138837029061	42.369	0.31298	42.066	41.883	42.196	-0.30352					12	5	3	0	0	0	0.0060369	1	15777	15777		128.57	63.338	1	20411000			21963	2017	13843	13921	21105	21105					0.055251207429591886
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	376.5450134277344	3	376.545108	1126.61349	-0.0044393	-1.6716E-06	-0.1129	-4.2512E-05	-0.11734	-4.4184E-05	376.5450541480804	42.374	0.26082	42.07	41.883	42.144	-0.30352					9	4	3	0	0	0	0.13316	1	15783	15783		40.725	25.768	1	10526000			21964	2017	13843	13921	21106	21106					0.055251207429591886
NELNIIHKF	9	Unmodified	_NELNIIHKF_					0	0	0		ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	ENST00000498612.1_1_19:54622012-54631467:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	564.314208984375	2	564.314023	1126.61349	0.32918	0.00018576	-0.34563	-0.00019504	-0.016444	-9.2798E-06	564.3140364656219	42.448	0.25948	42.072	41.891	42.15	-0.37565					6	4	2	0	0	0	0.045679	1	15609	15609		76.825	24.556	1	4946700			21965	2017	13843	13921	21107	21107					0.055251207429591886
NELNRFIED	9	Unmodified	_NELNRFIED_					0	0	0			REV__ENSG00000157881|ENST00000378466|PANK4	REV__ENSG00000157881|ENST00000378466|PANK4	MULTI-MSMS	HCT116MG_D190212_S1	1	575.7821044921875	2	575.280377	1148.5462	0.36468	0.00020979	0.26383	0.00015178	0.62851	0.00036157	575.2806972333192	25.621	1.2018	25.621	24.83	26.032	0					36	22	2	0	0	0	0.28073	1	9166	9166		32.786	1.5173	1	7425200	+		21966	12768	13844	13922	21108	21108					-0.022129542586753814
NELNRFIED	9	Unmodified	_NELNRFIED_					0	0	0			REV__ENSG00000157881|ENST00000378466|PANK4	REV__ENSG00000157881|ENST00000378466|PANK4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	575.280377	1148.5462	0.36468	0.00020979	0.26383	0.00015178	0.62851	0.00036157	575.2806972333192	25.621	1.2018	25.621	24.83	26.032	0	0.035589	-6.7028E-05	NaN	32.786	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7425200	+		21967	12768	13844	13922							-0.022129542586753814
NELNRFIED	9	Unmodified	_NELNRFIED_					0	0	0			REV__ENSG00000157881|ENST00000378466|PANK4	REV__ENSG00000157881|ENST00000378466|PANK4	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	575.280377	1148.5462	0.57172	0.0003289	0.19157	0.0001102	0.76329	0.00043911	575.2802596074171	25.751	1.9274	25.623	24.349	26.276	-0.12795	0.037527	-0.00015017	NaN	32.786	106	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47068000	+		21968	12768	13844	13922							-0.022129542586753814
NELPGLPRA	9	Unmodified	_NELPGLPRA_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.Q529Rfs*32|2|0.24|ENSG00000181222|chr17:7499400-7499400|C/-|frameshift_variant;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MSMS	HCT116MG_D190212_S3	3	483.7710876464844	2	483.771991	965.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.624	1	39.323	38.823	39.823	-0.30137								0	0	0	0.081406	1	14714	14714		61.357	6.5839	1				21969	5627	13845	13923	21109	21109					0.04528589646054115
NELPSAIKF	9	Unmodified	_NELPSAIKF_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1;SLC38A1|p.F232Sfs*2|1|0.39|ENSG00000111371|chr12:46204542-46204542|A/-|frameshift_variant	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.7817077636719	2	509.782025	1017.5495	0.51413	0.00026209	-0.21948	-0.00011188	0.29465	0.00015021	509.7818480923519	47.174	0.36209	47.052	46.922	47.285	-0.12175					9	6	2	0	0	0	0.16285	1	18024	18024		45.74	12.295	1	18031000			21970	2291	13846	13924	21110	21110					0.04142340586008686
NELPTVAF	8	Unmodified	_NELPTVAF_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	HCT116MG_D190212_S1	1	890.4622802734375	1	890.46181	889.454533	0.78568	0.00069962	-0.53808	-0.00047914	0.2476	0.00022048	890.461516365153	52.804	0.25797	52.804	52.639	52.897	0					10	4	3	0	0	0	0.030564	1	20196	20196		144.35	28.658	1	68538000			21971	3057	13847	13925	21111	21111					0.005384071148114344
NELPTVAF	8	Unmodified	_NELPTVAF_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	HCT116MG_D190212_S2	2	890.4627685546875	1	890.46181	889.454533	0.82917	0.00073834	-0.16298	-0.00014513	0.66619	0.00059322	890.4616095875901	53.024	0.67035	52.835	52.604	53.274	-0.18922					32	12	4	0	0	0	0.030564	1	20360	20360		144.35	28.658	1	581180000			21972	3057	13847	13925	21112	21112					0.005384071148114344
NELPTVAF	8	Unmodified	_NELPTVAF_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MSMS	HCT116MG_D190212_S2	2	445.73455810546875	2	445.734543	889.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.042	1	52.852	52.352	53.352	-0.18922								0	0	0	0.071193	1	20389	20389		88.904	14.481	1				21973	3057	13847	13925	21113	21113					0.005384071148114344
NELPTVAF	8	Unmodified	_NELPTVAF_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	HCT116MG_D190212_S3	3	890.4625244140625	1	890.46181	889.454533	1.0772	0.00095923	-0.20992	-0.00018692	0.86731	0.0007723	890.4615264258356	53.26	0.62732	52.957	52.721	53.348	-0.30305					29	11	4	0	0	0	0.043218	1	20133	20133		131.27	27.519	1	77144000			21974	3057	13847	13925	21114	21114					0.005384071148114344
NELPTVAF	8	Unmodified	_NELPTVAF_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	HCT116MG_D190212_S3	3	445.73455810546875	2	445.734543	889.454533	0.29729	0.00013251	-0.0016885	-7.5262E-07	0.2956	0.00013176	445.73436036149553	53.25	0.31392	52.947	52.773	53.087	-0.30304					10	5	3	0	0	0	0.76189	1	20181	20181		15.847	6.4997	1	2753000			21975	3057	13847	13925	21115	21115					0.005384071148114344
NELPTVAF	8	Unmodified	_NELPTVAF_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	HCT116MG_D190212_S4	4	890.4619140625	1	890.46181	889.454533	0.78717	0.00070095	0.047453	4.2255E-05	0.83463	0.0007432	890.4616813032555	53.292	0.46901	52.957	52.722	53.191	-0.33473					19	8	3	0	0	0	0.043218	1	19877	19877		131.27	27.519	1	25184000			21976	3057	13847	13925	21116	21116					0.005384071148114344
NELPVSKY	8	Unmodified	_NELPVSKY_					0	0	0		USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant;nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	475.2531433105469	2	475.2531	948.491647	0.16709	7.9408E-05	-0.010687	-5.0789E-06	0.1564	7.4329E-05	475.25292548467235	31.831	0.26089	31.831	31.7	31.961	0					7	4	2	0	0	0	0.14122	1	11750	11750		85.642	17.561	1	10444000			21977	1095	13848	13926	21117	21117					0.01534078660574778
NELPVSKY	8	Unmodified	_NELPVSKY_					0	0	0		USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant;nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	475.2534484863281	2	475.2531	948.491647	0.31684	0.00015058	0.42985	0.00020429	0.74669	0.00035487	475.25325626238316	32.146	0.31128	31.916	31.683	31.995	-0.23009					9	5	2	0	0	0	0.061818	1	11868	11868		110.67	28.145	1	86418000			21978	1095	13848	13926	21118	21118					0.01534078660574778
NELPVSKY	8	Unmodified	_NELPVSKY_					0	0	0		USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant;nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	949.4993896484375	1	949.498923	948.491647	0.7251	0.00068848	0.35455	0.00033665	1.0797	0.0010251	949.4992301121034	32.146	0.31148	31.916	31.735	32.046	-0.23009					9	5	2	0	0	0	0.016814	1	11889	11889		155.95	45.401	1	25692000			21979	1095	13848	13926	21119	21119					0.01534078660574778
NELPVSKY	8	Unmodified	_NELPVSKY_					0	0	0		USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant;nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	475.2535705566406	2	475.2531	948.491647	0.072912	3.4652E-05	0.73539	0.00034949	0.8083	0.00038415	475.253297108054	32.194	0.4683	31.916	31.682	32.15	-0.27841					21	8	4	0	0	0	0.14122	1	11771	11771		85.642	16.537	1	44763000			21980	1095	13848	13926	21120	21120					0.01534078660574778
NELPVSKY	8	Unmodified	_NELPVSKY_					0	0	0		USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant;nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	949.4994506835938	1	949.498923	948.491647	0.63471	0.00060266	0.29501	0.00028011	0.92972	0.00088277	949.4993484529317	32.142	0.26004	31.864	31.786	32.046	-0.27841					6	4	2	0	0	0	0.042259	1	11795	11795		132.38	21.827	1	5203300			21981	1095	13848	13926	21121	21121					0.01534078660574778
NELPVSKY	8	Unmodified	_NELPVSKY_					0	0	0		USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant;nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	USP13|p.G241Afs*16|1|0.09|ENSG00000058056|chr3:179708870-179708870|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	475.25360107421875	2	475.2531	948.491647	0.34466	0.0001638	0.06661	3.1657E-05	0.41127	0.00019546	475.25293918859904	32.308	0.3632	31.928	31.742	32.105	-0.37924					14	6	3	0	0	0	0.14122	1	11758	11758		85.642	17.561	1	14701000			21982	1095	13848	13926	21122	21122					0.01534078660574778
NELRCFSMLA	10	Unmodified	_NELRCFSMLA_					0	0	0		ENST00000548731.1_1_12:56544665-56551697:-|nuORF	ENST00000548731.1_1_12:56544665-56551697:-|nuORF	ENST00000548731.1_1_12:56544665-56551697:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	591.7626342773438	2	592.283551	1182.55255	0.69899	0.000414	-0.92406	-0.00054731	-0.22507	-0.00013331	592.2829899424484	30.099	0.53	29.849	29.487	30.017	-0.24946					16	9	2	0	0	0	0.29999	1	10974	10974		13.042	5.4335	1	3482000			21983	8739	13849	13927	21123	21123					-0.03142475623144492
NELRLLKKYQK	11	Unmodified	_NELRLLKKYQK_					0	0	0			REV__tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1	REV__tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	716.4384765625	2	716.935368	1431.85618	1.0388	0.00074475	3.1129	0.0022317	4.1517	0.0029765	716.9373128328621	55.523	0.41319	55.337	55.174	55.587	-0.18565					10	7	2	0	0	0	0.36447	1	21470	21470		7.609	0.88579	1	8118600	+		21984	17781	13850	13928	21124	21124					0.1575294574813597
NELTNGVIN	9	Unmodified	_NELTNGVIN_					0	0	0		PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant;nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;SNAP91|p.E224*|2|0.33|ENSG00000065609|chr6:83641191-83641192|-/A|frameshift_variant;nc|ENSG00000065609|O60641-3|SNAP91;nc|ENSG00000065609|O60641-4|SNAP91;ENSG00000065609|ENST00000369694|SNAP91	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	PICALM|p.L275Gfs*3|1|0.14|ENSG00000073921|chr11:86003436-86003437|-/TTCC|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	487.25	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.588	1	27.399	26.899	27.899	-0.18847								0	0	0	0.59795	1	9948	9948		24.021	3.5669	1				21985	1291	13851	13929	21125	21125					0.0002798916685833319
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S1	1	510.24322509765625	2	510.243264	1018.47197	0.53243	0.00027167	-0.17094	-8.7222E-05	0.36149	0.00018445	510.243030389185	31.024	0.31247	31.024	30.867	31.18	0					11	5	3	0	0	0	0.042978	1	11417	11417		78.149	28.216	1	9658400			21986	2002	13852	13930	21126	21126					-0.03652297350186018
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S2	2	510.2434997558594	2	510.243264	1018.47197	0.43861	0.0002238	0.29692	0.0001515	0.73554	0.0003753	510.2432571598257	31.267	0.25738	31	30.819	31.077	-0.26704					8	4	2	0	0	0	0.027492	1	11531	11531		88.904	47.064	1	19476000			21987	2002	13852	13930	21127	21127					-0.03652297350186018
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S3	3	510.2443542480469	2	510.243264	1018.47197	0.11676	5.9576E-05	0.7461	0.00038069	0.86286	0.00044027	510.2434303023747	31.413	0.31331	31.143	31.012	31.326	-0.27028					9	5	3	0	0	0	0.0063744	1	11489	11489		125.62	61.388	1	12346000			21988	2002	13852	13930	21128	21128					-0.03652297350186018
NELVSTHGY	9	Unmodified	_NELVSTHGY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1;ENST00000586212.1_1_19:3532513-3533660:+|nuORF	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MSMS	HCT116MG_D190212_S4	4	510.2433776855469	2	510.243264	1018.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.528	1	31.158	30.658	31.658	-0.37026								0	0	0	0.034673	1	11446	11446		78.149	21.972	1				21989	2002	13852	13930	21129	21129					-0.03652297350186018
NEMENVKKA	9	Unmodified	_NEMENVKKA_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S1	1	531.7661743164062	2	531.766049	1061.51754	0.32355	0.00017205	0.28896	0.00015366	0.61251	0.00032571	531.7660097738969	18.272	0.26077	18.272	18.141	18.402	0					7	4	2	0	0	0	0.01386	1	6293	6293		103.82	49.991	1	7181500			21990	6305	13853	13931	21130	21130					-0.010753951594551836
NEMENVKKA	9	Unmodified	_NEMENVKKA_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7659912109375	2	531.766049	1061.51754	0.19326	0.00010277	0.079282	4.216E-05	0.27254	0.00014493	531.7660438995566	18.918	0.36549	18.549	18.366	18.732	-0.3695					15	6	3	0	0	0	0.0051419	1	6531	6531		136.39	68.311	1	92860000			21991	6305	13853	13931	21131	21131					-0.010753951594551836
NEMENVKKA	9	Unmodified	_NEMENVKKA_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S3	3	354.8463134765625	3	354.846458	1061.51754	-0.30881	-0.00010958	-0.024627	-8.7386E-06	-0.33344	-0.00011832	354.84639944806867	17.843	0.31218	17.924	17.794	18.106	0.081358					7	5	2	0	0	0	0.13316	2	6035	6002;6035		40.725	20.144	1	9861000			21992	6305	13853	13931	21132;21133	21133					-0.010753951594551836
NEMENVKKA	9	Unmodified	_NEMENVKKA_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MSMS	HCT116MG_D190212_S3	3	531.7662353515625	2	531.766049	1061.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.85	1	17.932	17.432	18.432	0.081358								0	0	0	5.8813E-14	1	6024	6024		187.3	58.931	1				21993	6305	13853	13931	21134	21134					-0.010753951594551836
NEMENVKKA	9	Unmodified	_NEMENVKKA_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S4	4	354.84637451171875	3	354.846458	1061.51754	-0.16705	-5.9277E-05	0.087223	3.0951E-05	-0.079828	-2.8327E-05	355.18086235572116	18.176	0.20658	18.001	17.896	18.102	-0.17501					5	3	2	0	0	0	0.56733	1	6108	6108		17.443	7.2921	1	1254900			21994	6305	13853	13931	21135	21135					-0.010753951594551836
NEMHSLLERY	10	Unmodified	_NEMHSLLERY_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MSMS	HCT116MG_D190212_S1	1	646.30859375	2	646.308612	1290.60267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.865	1	40.865	40.365	41.365	0								0	0	0	0.013449	1	15372	15372		125.66	81.884	1				21995	3624	13854	13932	21136	21136					-0.03100649693624291
NEMHSLLERY	10	Unmodified	_NEMHSLLERY_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MSMS	HCT116MG_D190212_S2	2	646.3087768554688	2	646.308612	1290.60267	0.84431	0.00054569	-0.021332	-1.3787E-05	0.82298	0.0005319	646.3084651405151	40.769	0.25806	40.699	40.571	40.829	-0.069626					10	4	3	0	0	0	1.05E-10	2	15396	15352;15396		221.57	169.94	1	35926000			21996	3624	13854	13932	21137;21138	21138					-0.03100649693624291
NEMHSLLERY	10	Unmodified	_NEMHSLLERY_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	646.308612	1290.60267	0.40468	0.00026155	0.26945	0.00017415	0.67413	0.00043569	646.8105937454349	40.82	0.15609	40.82	40.69	40.846	0	0.06044	0.00024294	NaN	221.57	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10337000			21997	3624	13854	13932							-0.03100649693624291
NEMMSKEQF	9	Unmodified	_NEMMSKEQF_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S3	3	572.2445678710938	2	572.244092	1142.47363	0.50027	0.00028627	0.17553	0.00010045	0.6758	0.00038672	572.2442402982373	34.035	0.20844	33.741	33.611	33.819	-0.29419					5	3	2	0	0	0	0.043159	1	12538	12538		78.06	48.979	1	7392000			21998	2498	13855	13933	21139	21139					-0.09190747648085562
NEMMSKEQF	9	Unmodified	_NEMMSKEQF_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MSMS	HCT116MG_D190212_S4	4	572.2445678710938	2	572.244092	1142.47363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.178	1	33.793	33.293	34.293	-0.38558								0	0	0	0.76718	1	12470	12470		10.824	0	1				21999	2498	13855	13933	21140	21140					-0.09190747648085562
NEMTTIHY	8	Unmodified	_NEMTTIHY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	504.7268371582031	2	504.726392	1007.43823	0.47885	0.00024169	-0.12126	-6.1202E-05	0.35759	0.00018049	504.72635725210216	34.987	0.20786	34.987	34.857	35.064	0					5	3	2	0	0	0	0.23195	1	13012	13012		67.344	35.227	1	13451000			22000	163	13856	13934	21141	21141					-0.0651904211360943
NEMTTIHY	8	Unmodified	_NEMTTIHY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7263488769531	2	504.726392	1007.43823	0.52692	0.00026595	-0.01237	-6.2433E-06	0.51455	0.0002597	504.7263543096277	35.049	0.25872	34.891	34.709	34.968	-0.15834					7	4	2	0	0	0	0.48901	1	13088	13088		42.095	22.838	1	21620000			22001	163	13856	13934	21142	21142					-0.0651904211360943
NEMTTIHY	8	Unmodified	_NEMTTIHY_					0	0	0		AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant;ENSG00000021776|ENST00000156471|AQR;AQR|p.K759Rfs*19|1|0.27|ENSG00000021776|chr15:34897678-34897678|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	AQR|p.K1234Sfs*17|1|0.35|ENSG00000021776|chr15:34870819-34870819|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	504.72662353515625	2	504.726392	1007.43823	0.55814	0.00028171	-0.18313	-9.2433E-05	0.375	0.00018927	504.7263683421944	35.282	0.25962	34.983	34.801	35.061	-0.29922					10	4	3	0	0	0	0.23195	1	13033	13033		67.344	38.857	1	11245000			22002	163	13856	13934	21143	21143					-0.0651904211360943
NENDIITHF	9	Unmodified	_NENDIITHF_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	551.7620239257812	2	551.76182	1101.50909	0.40539	0.00022368	-0.036691	-2.0245E-05	0.36869	0.00020343	551.7616696954394	44.595	0.36617	44.595	44.41	44.777	0					15	6	3	0	0	0	0.0045841	1	16879	16879		142.08	80.478	1	54622000			22003	2337	13857	13935	21144	21144					-0.03760625804443407
NENDIITHF	9	Unmodified	_NENDIITHF_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	551.7612915039062	2	551.76182	1101.50909	0.59874	0.00033036	0.034175	1.8856E-05	0.63292	0.00034922	551.7616853008842	44.593	0.57336	44.508	44.325	44.899	-0.084797					27	10	4	0	0	0	0.0035147	1	16929	16929		168.66	89.062	1	263910000			22004	2337	13857	13935	21145	21145					-0.03760625804443407
NENDIITHF	9	Unmodified	_NENDIITHF_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	551.7620849609375	2	551.76182	1101.50909	0.63625	0.00035106	-0.036982	-2.0405E-05	0.59927	0.00033066	551.7616969488251	44.826	0.33792	44.517	44.394	44.732	-0.30927					17	7	3	0	0	0	0.003706	1	16766	16766		155.03	84.694	1	27706000			22005	2337	13857	13935	21146	21146					-0.03760625804443407
NENDIITHF	9	Unmodified	_NENDIITHF_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;MED23|p.F896Lfs*5|1|0.27|ENSG00000112282|chr6:131596608-131596608|A/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	552.2630615234375	2	551.76182	1101.50909	0.53011	0.0002925	-0.094669	-5.2235E-05	0.43544	0.00024026	551.7616651822053	44.883	0.17894	44.51	44.433	44.612	-0.37326					13	8	2	0	0	0	0.0048275	2	16540	16525;16540		139.14	73.903	1	5912000			22006	2337	13857	13935	21147;21148	21148					-0.03760625804443407
NENEKKIWY	9	Unmodified	_NENEKKIWY_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	612.3064575195312	2	612.306395	1222.59824	0.44194	0.0002706	-0.50732	-0.00031063	-0.065377	-4.0031E-05	612.3061784015819	34.273	0.20804	33.979	33.871	34.079	-0.2942					5	3	2	0	0	0	0.66792	1	12634	12634		7.2892	1.5574	1	3112800			22007	274	13858	13936	21149	21149					-0.004157908449087699
NENIKHFCT	9	Unmodified	_NENIKHFCT_					0	0	0		HEPHL1|p.I389Nfs*11|1|0.12|ENSG00000181333|chr11:94070469-94070470|-/A|frameshift_variant;ENSG00000181333|ENST00000315765|HEPHL1	HEPHL1|p.I389Nfs*11|1|0.12|ENSG00000181333|chr11:94070469-94070470|-/A|frameshift_variant	HEPHL1|p.I389Nfs*11|1|0.12|ENSG00000181333|chr11:94070469-94070470|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	552.7665405273438	2	553.258391	1104.50223	0.42267	0.00023385	0.34009	0.00018816	0.76276	0.000422	553.2584807175834	42.131	0.25966	41.828	41.676	41.936	-0.30296					7	4	2	0	0	0	0.25656	1	15642	15642		9.3831	0	1	3178600			22008	5632	13859	13937	21150	21150					-0.045842619566428766
NENLVERF	8	Unmodified	_NENLVERF_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000048392|Q7LG56-2|RRM2B	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S1	1	510.7591552734375	2	510.759081	1019.50361	0.41497	0.00021195	0.36742	0.00018766	0.78238	0.00039961	510.7592017542396	41.197	0.26029	41.197	41.029	41.289	0					10	4	3	0	0	0	0.017913	1	15502	15502		155.03	47.029	1	28443000			22009	5216;1033	13860	13938	21151	21151					-0.005363045962326396
NENLVERF	8	Unmodified	_NENLVERF_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000048392|Q7LG56-2|RRM2B	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2820739746094	2	510.759081	1019.50361	0.15906	8.1241E-05	0.26375	0.00013472	0.42281	0.00021596	510.75913787864835	41.132	0.35972	41.064	40.882	41.242	-0.068199					16	6	4	0	0	0	0.0006857	2	15525	15525;15532		240.41	104.08	1	225850000			22010	5216;1033	13860	13938	21152;21153	21152					-0.005363045962326396
NENLVERF	8	Unmodified	_NENLVERF_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000048392|Q7LG56-2|RRM2B	ENSG00000171848|ENST00000304567|RRM2	MULTI-MSMS	HCT116MG_D190212_S3	3	510.7592468261719	2	510.759081	1019.50361	0.0076519	3.9083E-06	0.036849	1.8821E-05	0.044501	2.2729E-05	510.7590183483532	41.428	0.25682	41.126	40.945	41.202	-0.30185					10	6	2	0	0	0	0.024686	1	15415	15415		209.87	83.304	1	66662000			22011	5216;1033	13860	13938	21154	21154					-0.005363045962326396
NENLVERF	8	Unmodified	_NENLVERF_					0	0	0		ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000491447.1_1_2:10262886-10264978:+|nuORF;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000048392|Q7LG56-2|RRM2B	ENSG00000171848|ENST00000304567|RRM2	MSMS	HCT116MG_D190212_S4	4	510.759033203125	2	510.759081	1019.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.523	1	41.147	40.647	41.647	-0.37637								0	0	0	1.9485000000000002E-20	1	15243	15243		191.38	80.093	1				22012	5216;1033	13860	13938	21155	21155					-0.005363045962326396
NENMVAKV	8	Unmodified	_NENMVAKV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S1	1	452.7315368652344	2	452.731477	903.448402	0.38117	0.00017257	0.14335	6.4897E-05	0.52452	0.00023747	452.73141358991955	28.474	0.32059	28.474	28.321	28.641	0					8	5	2	0	0	0	0.065113	1	10388	10388		107.19	41.952	1	14541000			22013	6266	13861	13939	21156	21156					-0.007184343883636757
NENMVAKV	8	Unmodified	_NENMVAKV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	HCT116MG_D190212_S2	2	452.73162841796875	2	452.731477	903.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.004	1	28.688	28.188	29.188	-0.31613								0	0	0	0.013507	1	10605	10605		107.19	57.254	1				22014	6266	13861	13939	21157	21157					-0.007184343883636757
NENMVAKV	8	Unmodified	_NENMVAKV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S3	3	452.73138427734375	2	452.731477	903.448402	0.30931	0.00014003	-0.058251	-2.6372E-05	0.25106	0.00011366	452.73138592847323	28.929	0.41643	28.707	28.525	28.942	-0.22195					12	7	2	0	0	0	0.095352	1	10490	10490		96.111	39.934	1	33000000			22015	6266	13861	13939	21158	21158					-0.007184343883636757
NENMVAKV	8	Unmodified	_NENMVAKV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	HCT116MG_D190212_S4	4	452.7315673828125	2	452.731477	903.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.156	1	28.815	28.315	29.315	-0.34059								0	0	0	0.14326	1	10516	10516		75.761	31.903	1				22016	6266	13861	13939	21159	21159					-0.007184343883636757
NENNMACHY	9	Unmodified	_NENNMACHY_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-SECPEP	HCT116MG_D190212_S3	3	548.2506713867188	2	548.202758	1094.39096	0.096171	5.2721E-05	-0.49285	-0.00027018	-0.39667	-0.00021746	548.2024410058831	36.16	0.62428	35.86	35.678	36.302	-0.30042					19	11	2	0	0	0	0.26328	1	13528	13528		1.8442	1.8442	1	13691000	+		22017	10556	13862	13940	21160	21160					-0.15245644656238255
NENNSHAF	8	Unmodified	_NENNSHAF_					0	0	0		PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;ENSG00000121892|ENST00000303538|PDS5A	PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S1	1	466.69659423828125	2	466.696481	931.378408	0.21167	9.8785E-05	0.35684	0.00016654	0.56851	0.00026532	466.69633730848125	22.246	0.20877	22.246	22.115	22.324	0					5	3	2	0	0	0	0.5791	1	7872	7872		34.187	16.052	1	4494800			22018	2741;1433	13863	13941	21161	21161					-0.09002596732625534
NENNSHAF	8	Unmodified	_NENNSHAF_					0	0	0		PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;PDS5B|p.K1268Rfs*8|1|0.07|ENSG00000083642|chr13:32770296-32770296|A/-|frameshift_variant;PDS5B|p.K1287Rfs*22|1|0.26|ENSG00000083642|chr13:32770351-32770351|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-2|PDS5B;PDS5B|p.N1390Cfs*12|1|0.44|ENSG00000083642|chr13:32770750-32770751|AA/-|frameshift_variant;ENSG00000083642|ENST00000315596|PDS5B;ENSG00000121892|ENST00000303538|PDS5A	PDS5B|p.S1198Vfs*10|1|0.28|ENSG00000083642|chr13:32764556-32764556|A/-|frameshift_variant;ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S2	2	466.6965637207031	2	466.696481	931.378408	0.22124	0.00010325	-0.10826	-5.0525E-05	0.11298	5.2727E-05	466.69643202757754	22.757	0.26023	22.372	22.258	22.518	-0.38521					7	4	2	0	0	0	0.19608	1	8108	8108		74.423	74.423	1	13114000			22019	2741;1433	13863	13941	21162	21162					-0.09002596732625534
NENPLRALY	9	Unmodified	_NENPLRALY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3;PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2	ENSG00000149269|ENST00000356341|PAK1;PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.288330078125	2	545.288005	1088.56146	0.88594	0.00048309	-0.20882	-0.00011387	0.67712	0.00036922	545.2878803545526	46.667	0.56557	46.556	46.265	46.831	-0.11122					23	10	3	0	0	0	0.0045841	1	17788	17788		142.08	67.151	1	23392000			22020	5597;4051	13864	13942	21163	21163					0.020719573291898996
NENPLRALY	9	Unmodified	_NENPLRALY_					0	0	0		ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3;PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2	ENSG00000149269|ENST00000356341|PAK1;PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	545.2883911132812	2	545.288005	1088.56146	0.49329	0.00026899	-0.067436	-3.6772E-05	0.42586	0.00023221	545.2879921305425	47.022	0.52136	46.708	46.333	46.855	-0.31405					16	9	2	0	0	0	0.0058997	1	17640	17640		129.77	64.537	1	5394200			22021	5597;4051	13864	13942	21164	21164					0.020719573291898996
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S1	1	526.2749633789062	2	526.274564	1050.53457	0.16131	8.4896E-05	0.56707	0.00029843	0.72838	0.00038333	526.2749061591237	48.118	0.30991	48.118	47.944	48.254	0					10	5	3	0	0	0	9.4614E-05	1	18306	18306		200.32	100.57	1	27098000			22022	3710	13865	13943	21165	21165					0.011328487180207958
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	526.2748413085938	2	526.274564	1050.53457	0.66216	0.00034848	-0.2262	-0.00011904	0.43595	0.00022943	526.2745217171516	48.186	0.35447	48.054	47.841	48.196	-0.13282					9	6	2	0	0	0	0.0095327	1	18412	18412		114.5	51.924	1	67625000			22023	3710	13865	13943	21166	21166					0.011328487180207958
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S3	3	526.2748413085938	2	526.274564	1050.53457	0.53787	0.00028307	0.34465	0.00018138	0.88252	0.00046445	526.2745689845112	48.378	0.36451	48.062	47.879	48.244	-0.31596					15	6	4	0	0	0	1.4455E-05	1	18194	18194		214.05	114.29	1	23212000			22024	3710	13865	13943	21167	21167					0.011328487180207958
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S4	4	526.7762451171875	2	526.274564	1050.53457	0.32246	0.0001697	0.39836	0.00020965	0.72082	0.00037935	526.2747904830663	48.454	0.193	48.087	47.935	48.128	-0.36728					5	3	2	0	0	0	0.00446	1	17959	17959		143.91	71.987	1	5746700			22025	3710	13865	13943	21168	21168					0.011328487180207958
NENVHKEF	8	Unmodified	_NENVHKEF_					0	0	0		ENSG00000129245|ENST00000250113|FXR2;FXR2|p.P540Qfs*32|3|0.45|ENSG00000129245|chr17:7592804-7592804|G/-|frameshift_variant;ENST00000576693.1_1_17:7506199-7507356:-|nuORF	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-SECPEP	HCT116MG_D190212_S1	1	508.089599609375	2	508.743431	1015.47231	0.49556	0.00025211	-0.56862	-0.00028928	-0.073056	-3.7167E-05	508.74310653893104	20.952	0.15927	20.952	20.852	21.012	0					4	2	2	0	0	0	0.23887	1	7344	7344		28.234	7.78	1	3920000			22026	3025	13866	13944	21169	21169					-0.0348087763032936
NENYIASEKDN	11	Unmodified	_NENYIASEKDN_					0	0	0			REV__tr|U7SNL9|U7SNL9_FUSNUCytoplasmicproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02036PE=4SV=1	REV__tr|U7SNL9|U7SNL9_FUSNUCytoplasmicproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02036PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	648.7901611328125	2	648.788763	1295.56297	0.69171	0.00044878	0.85948	0.00055762	1.5512	0.0010064	648.7896912679985	27.256	0.20847	27.256	27.125	27.334	0					6	3	2	0	0	0	0.71182	1	9910	9910		17.443	1.2935	1	8904600	+		22027	17738	13867	13945	21170	21170					-0.07298498163368095
NEPAVSHISD	10	Unmodified	_NEPAVSHISD_					0	0	0			REV__ENSG00000170876|ENST00000306077|TMEM43	REV__ENSG00000170876|ENST00000306077|TMEM43	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7515258789062	2	534.751453	1067.48835	0.40428	0.00021619	0.45389	0.00024272	0.85817	0.00045891	534.7516629691688	16.074	0.7799	16.159	15.925	16.705	0.085424					18	14	2	0	0	0	0.45751	1	5313	5313		38.176	14.386	1	5014200	+		22028	13320	13868	13946	21171	21171					-0.04269216184070501
NEPHVTYCC	9	Unmodified	_NEPHVTYCC_					0	0	0			REV__SEC14L1|p.I147Lfs*3|1|0.38|ENSG00000129657|chr17:77193509-77193509|A/-|frameshift_variant	REV__SEC14L1|p.I147Lfs*3|1|0.38|ENSG00000129657|chr17:77193509-77193509|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	533.2106323242188	2	533.210052	1064.40555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.726	1	40.424	39.924	40.924	-0.30161								0	0	0	0.56943	1	15128	15128		25.399	1.3787	1		+		22029	11896	13869	13947	21172	21172					-0.12407572508095654
NEQDLGIQY	9	Unmodified	_NEQDLGIQY_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S1	1	540.2540893554688	2	540.253828	1078.4931	0.50268	0.00027157	0.25674	0.0001387	0.75942	0.00041028	540.2539537754936	41.112	0.30358	41.112	40.986	41.289	0					12	5	3	0	0	0	0.0040527	1	15493	15493		149.91	71.765	1	39581000			22030	1019	13870	13948	21173	21173					-0.04300332041339061
NEQDLGIQY	9	Unmodified	_NEQDLGIQY_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S1	1	1079.5006103515625	1	1079.50038	1078.4931	0.65472	0.00070677	0.068726	7.4189E-05	0.72344	0.00078096	1079.499822810806	41.159	0.20846	41.159	41.029	41.237	0					8	3	3	0	0	0	0.0042464	1	15500	15500		147.06	72.13	1	22695000			22031	1019	13870	13948	21174	21174					-0.04300332041339061
NEQDLGIQY	9	Unmodified	_NEQDLGIQY_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	540.2540283203125	2	540.253828	1078.4931	0.34472	0.00018624	-0.18948	-0.00010237	0.15524	8.3869E-05	540.2536581125187	41.183	0.7704	41.114	40.882	41.653	-0.068199					23	14	3	0	0	0	0.0042464	1	15535	15535		147.06	68.331	1	355960000			22032	1019	13870	13948	21175	21175					-0.04300332041339061
NEQDLGIQY	9	Unmodified	_NEQDLGIQY_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	1079.5006103515625	1	1079.50038	1078.4931	0.30051	0.0003244	-0.13711	-0.00014801	0.16339	0.00017638	1079.4999999650072	41.183	0.35908	41.114	40.934	41.293	-0.068199					14	6	3	0	0	0	0.0042464	1	15540	15540		147.06	72.13	1	151630000			22033	1019	13870	13948	21176	21176					-0.04300332041339061
NEQDLGIQY	9	Unmodified	_NEQDLGIQY_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S3	3	540.2538452148438	2	540.253828	1078.4931	0.2992	0.00016164	-0.14956	-8.0803E-05	0.14963	8.084E-05	540.2537632442609	41.436	0.46532	41.134	40.893	41.358	-0.30185					29	18	2	0	0	0	0.0034607	1	15378	15378		163.04	88.107	1	139370000			22034	1019	13870	13948	21177	21177					-0.04300332041339061
NEQDLGIQY	9	Unmodified	_NEQDLGIQY_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S3	3	1080.5042724609375	1	1079.50038	1078.4931	0.26828	0.00028961	-0.53146	-0.00057372	-0.26318	-0.0002841	1079.4995073774096	41.428	0.26486	41.126	40.945	41.21	-0.30185					10	7	2	0	0	0	0.012496	1	15419	15419		107.19	61.487	1	21615000			22035	1019	13870	13948	21178	21178					-0.04300332041339061
NEQDLGIQY	9	Unmodified	_NEQDLGIQY_					0	0	0		nc|ENSG00000044115|P35221-2|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1|p.T832*|1|0.29|ENSG00000044115|chr5:138933859-138933862|CAGA/-|frameshift_variant;CTNNA1|p.K493Nfs*31|1|0.19|ENSG00000044115|chr5:138917827-138917827|A/-|frameshift_variant;CTNNA1|p.K181Nfs*7|1|0.4|ENSG00000044115|chr5:138812254-138812254|A/-|frameshift_variant	nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-2|CTNNA1	MULTI-MSMS	HCT116MG_D190212_S4	4	540.7550659179688	2	540.253828	1078.4931	0.45943	0.00024821	-0.1505	-8.1307E-05	0.30894	0.0001669	540.2538791036822	41.468	0.22026	41.092	41.003	41.224	-0.37637					44	25	2	0	0	0	0.0042464	2	15212	15212;15214		147.06	68.91	1	40050000			22036	1019	13870	13948	21179;21180	21179					-0.04300332041339061
NEQEGVPSV	9	Unmodified	_NEQEGVPSV_					0	0	0		ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	MULTI-MSMS	HCT116MG_D190212_S2	2	958.44873046875	1	958.447616	957.44034	0.57423	0.00055037	0.41602	0.00039873	0.99025	0.0009491	958.4483263009232	32.615	0.3128	32.404	32.221	32.534	-0.21135					8	5	2	0	0	0	0.061422	1	12104	12104		69.105	28.866	1	11836000			22037	2371	13871	13949	21181	21181					-0.040082901041273544
NEQEGVPSV	9	Unmodified	_NEQEGVPSV_					0	0	0		ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	MULTI-MSMS	HCT116MG_D190212_S3	3	958.449951171875	1	958.447616	957.44034	0.90184	0.00086437	-0.63253	-0.00060625	0.26932	0.00025812	958.447369962759	32.699	0.36453	32.414	32.196	32.56	-0.28511					9	6	2	0	0	0	0.061422	1	12035	12035		69.105	36.319	1	3111400			22038	2371	13871	13949	21182	21182					-0.040082901041273544
NEQEIRTA	8	Unmodified	_NEQEIRTA_					0	0	0			REV__ENSG00000164331|ENST00000296785|ANKRA2	REV__ENSG00000164331|ENST00000296785|ANKRA2	MULTI-SECPEP	HCT116MG_D190212_S3	3	480.21051025390625	2	480.740888	959.467223	0.10825	5.2038E-05	0.15976	7.6803E-05	0.26801	0.00012884	480.740794625454	20.341	0.52053	20.389	20.259	20.78	0.048107					14	9	2	0	0	0	0.31097	1	6990	6990		16.942	16.942	1	16409000	+		22039	13002	13872	13950	21183	21183					-0.014131814929442044
NEQEKVLSA	9	Unmodified	_NEQEKVLSA_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B;ZNF518B|p.T403Nfs*7|1|0.39|ENSG00000178163|chr4:10445121-10445122|-/T|frameshift_variant	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MSMS	HCT116MG_D190212_S3	3	509.26336669921875	2	509.264196	1016.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.341	1	26.191	25.691	26.691	-0.14924								0	0	0	0.36226	1	9445	9445		35.612	4.9757	1				22040	5489	13873	13951	21184	21184					0.006242583383368583
NEQESAVHP	9	Unmodified	_NEQESAVHP_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-SECPEP	HCT116MG_D190212_S2	2	505.748779296875	2	505.73052	1009.44649	0.39681	0.00020068	0.38056	0.00019246	0.77737	0.00039314	505.73057086737754	20.483	0.37043	20.103	19.813	20.183	-0.37949					9	6	2	0	0	0	0.25347	1	7190	7190		6.2058	0	1	5540400			22041	3410	13874	13952	21185	21185					-0.05785771872615442
NEQGNFPPP	9	Unmodified	_NEQGNFPPP_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	500.23046875	2	500.230156	998.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.617	1	31.369	30.869	31.869	-0.24883								0	0	0	0.30238	1	11670	11670		39.95	9.7249	1				22042	1652	13875	13953	21186	21186					-0.053525665216625384
NEQGNFPPP	9	Unmodified	_NEQGNFPPP_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	500.2304992675781	2	500.230156	998.445759	0.3875	0.00019384	0.13291	6.6483E-05	0.5204	0.00026032	500.230196649263	31.7	1.355	31.429	30.595	31.95	-0.27028					52	25	3	0	0	0	0.17622	1	11629	11629		43.772	43.772	1	4456800			22043	1652	13875	13953	21187	21187					-0.053525665216625384
NEQGNFPPP	9	Unmodified	_NEQGNFPPP_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	500.2295837402344	2	500.230156	998.445759	0.51036	0.0002553	-0.33235	-0.00016625	0.17801	8.9048E-05	500.2298601620858	32.467	0.93693	32.189	31.734	32.671	-0.27841					28	17	2	0	0	0	0.21258	2	11944	11928;11944		39.95	39.95	1	3965500			22044	1652	13875	13953	21188;21189	21189					-0.053525665216625384
NEQGNFPPP	9	Unmodified	_NEQGNFPPP_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	500.2308349609375	2	500.230156	998.445759	0.3129	0.00015652	0.49152	0.00024587	0.80442	0.00040239	500.2304295104492	31.625	0.93487	31.255	30.868	31.802	-0.37026					24	17	2	0	0	0	0.43843	2	11443	11443;11626		20.415	20.415	1	2433200			22045	1652	13875	13953	21190;21191	21190					-0.053525665216625384
NEQGSYVV	8	Unmodified	_NEQGSYVV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	895.4157104492188	1	895.415588	894.408311	1.3173	0.0011796	-0.23575	-0.0002111	1.0816	0.00096846	895.4151377279942	33.045	0.31186	32.833	32.688	33	-0.21135					9	5	2	0	0	0	0.064348	1	12246	12246		108	46.64	1	96052000			22046	4969	13876	13954	21192	21192					-0.04311657787286549
NEQGSYVV	8	Unmodified	_NEQGSYVV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S3	3	896.42041015625	1	895.415588	894.408311	1.1436	0.001024	0.014432	1.2923E-05	1.158	0.0010369	895.4157501560284	33.236	0.37139	32.946	32.829	33.2	-0.29013					28	17	2	0	0	0	0.64404	1	12175	12175		28.487	10.352	1	33267000			22047	4969	13876	13954	21193	21193					-0.04311657787286549
NEQGSYVV	8	Unmodified	_NEQGSYVV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S4	4	895.4171142578125	1	895.415588	894.408311	0.95216	0.00085257	0.11384	0.00010193	1.066	0.00095451	895.4155093271914	33.29	0.20412	32.908	32.849	33.053	-0.38223					23	14	2	0	0	0	0.094591	1	12114	12114		96.285	44.016	1	9523300			22048	4969	13876	13954	21194	21194					-0.04311657787286549
NEQGSYVVA	9	Unmodified	_NEQGSYVVA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S1	1	966.4541015625	1	966.452701	965.445425	0.81852	0.00079106	0.43209	0.0004176	1.2506	0.0012087	966.4528780284162	30.629	0.3642	30.629	30.451	30.815	0					15	6	3	0	0	0	0.0062667	1	11226	11226		126.57	70.389	1	17003000			22049	4969	13877	13955	21195	21195					-0.038679862415278876
NEQGSYVVA	9	Unmodified	_NEQGSYVVA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MSMS	HCT116MG_D190212_S1	1	483.7301940917969	2	483.729989	965.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.612	1	30.612	30.112	31.112	0								0	0	0	0.42657	1	11234	11234		32.305	14.171	1				22050	4969	13877	13955	21196	21196					-0.038679862415278876
NEQGSYVVA	9	Unmodified	_NEQGSYVVA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	966.4539184570312	1	966.452701	965.445425	0.53651	0.00051851	0.08808	8.5125E-05	0.62459	0.00060363	966.4527616843831	30.853	0.67257	30.586	30.404	31.077	-0.26704					29	12	4	0	0	0	0.0062667	1	11349	11349		126.57	69.095	1	341140000			22051	4969	13877	13955	21197	21197					-0.038679862415278876
NEQGSYVVA	9	Unmodified	_NEQGSYVVA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	483.7300109863281	2	483.729989	965.445425	0.074454	3.6015E-05	0.1957	9.4665E-05	0.27015	0.00013068	483.73003424704666	30.886	0.41519	30.619	30.404	30.819	-0.26704					22	7	4	0	0	0	0.0080847	1	11352	11352		118.07	72.047	1	146400000			22052	4969	13877	13955	21198	21198					-0.038679862415278876
NEQGSYVVA	9	Unmodified	_NEQGSYVVA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S3	3	966.4532470703125	1	966.452701	965.445425	0.50294	0.00048607	0.20074	0.00019401	0.70368	0.00068008	966.4527490372064	30.995	0.88704	30.735	30.5	31.387	-0.26071					45	16	5	0	0	0	0.0062667	1	11288	11288		126.57	69.095	1	216210000			22053	4969	13877	13955	21199	21199					-0.038679862415278876
NEQGSYVVA	9	Unmodified	_NEQGSYVVA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S3	3	483.7298583984375	2	483.729989	965.445425	0.087184	4.2173E-05	0.12939	6.259E-05	0.21657	0.00010476	483.7299962283824	30.995	0.62605	30.735	30.5	31.126	-0.26071					32	11	5	0	0	0	0.016701	1	11291	11291		99.799	59.842	1	94531000			22054	4969	13877	13955	21200	21200					-0.038679862415278876
NEQGSYVVA	9	Unmodified	_NEQGSYVVA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S4	4	966.4534912109375	1	966.452701	965.445425	0.51394	0.0004967	0.21573	0.00020849	0.72967	0.0007052	966.4527605403644	31.114	0.67279	30.744	30.507	31.179	-0.37026					31	12	4	0	0	0	0.0062667	1	11245	11245		126.57	69.095	1	93364000			22055	4969	13877	13955	21201	21201					-0.038679862415278876
NEQGSYVVA	9	Unmodified	_NEQGSYVVA_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S4	4	483.73004150390625	2	483.729989	965.445425	0.042901	2.0752E-05	0.13923	6.7352E-05	0.18214	8.8104E-05	483.7299928463329	31.109	0.62077	30.739	30.507	31.128	-0.37015					24	11	4	0	0	0	0.027442	1	11259	11259		88.954	48.997	1	33103000			22056	4969	13877	13955	21202	21202					-0.038679862415278876
NEQIKGNLN	9	Unmodified	_NEQIKGNLN_					0	0	0			REV__nc|ENSG00000038945|P21757-2|MSR1	REV__nc|ENSG00000038945|P21757-2|MSR1	MSMS	HCT116MG_D190212_S2	2	515.2709350585938	2	515.269813	1028.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.127	1	41.059	40.559	41.559	-0.068199								0	0	0	0.38321	1	15530	15530		34.402	2.0962	1		+		22057	10584	13878	13956	21203	21203					0.011950804324669662
NEQLALIRA	9	Unmodified	_NEQLALIRA_					0	0	0			REV__ENSG00000079689|ENST00000377961|SCGN	REV__ENSG00000079689|ENST00000377961|SCGN	MULTI-MSMS	HCT116MG_D190212_S2	2	514.2986450195312	2	514.298373	1026.58219	0.078907	4.0582E-05	0.85673	0.00044061	0.93563	0.00048119	514.298608804637	41.125	0.20564	41.057	40.934	41.14	-0.068199					7	3	3	0	0	0	0.14171	1	15534	15534		49.933	6.0747	1	47462000	+		22058	10853	13879	13957	21204	21204					0.0699654770885445
NEQLLTQY	8	Unmodified	_NEQLLTQY_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7537536621094	2	504.753464	1007.49238	0.46558	0.000235	-0.07424	-3.7473E-05	0.39134	0.00019753	504.75349886416876	40.148	0.31229	40.076	39.945	40.258	-0.072838					8	5	2	0	0	0	0.14283	1	15158	15158		85.272	0	1	23221000			22059	3596	13880	13958	21205	21205					-0.011071266903854848
NEQLLTQY	8	Unmodified	_NEQLLTQY_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-MSMS	HCT116MG_D190212_S3	3	1008.5011596679688	1	1008.49965	1007.49238	0.54146	0.00054606	0.46107	0.00046499	1.0025	0.0010111	1008.4999314360704	40.387	0.36436	40.085	39.851	40.215	-0.30161					10	6	2	0	0	0	0.043218	1	14994	14994		131.27	0	1	13898000			22060	3596	13880	13958	21206	21206					-0.011071266903854848
NEQLLTQY	8	Unmodified	_NEQLLTQY_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MSMS	HCT116MG_D190212_S3	3	504.75360107421875	2	504.753464	1007.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.392	1	40.09	39.59	40.59	-0.30161								0	0	0	8.6441E-10	1	14993	14993		158.2	0	1				22061	3596	13880	13958	21207	21207					-0.011071266903854848
NEQLLTQY	8	Unmodified	_NEQLLTQY_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-MSMS	HCT116MG_D190212_S4	4	504.7539978027344	2	504.753464	1007.49238	0.28904	0.00014589	0.24759	0.00012497	0.53663	0.00027087	504.7535254298689	40.483	0.43465	40.104	39.903	40.338	-0.37828					14	8	2	0	0	0	0.057078	1	14832	14832		115.69	0	1	12485000			22062	3596	13880	13958	21208	21208					-0.011071266903854848
NEQLLTQY	8	Unmodified	_NEQLLTQY_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-MSMS	HCT116MG_D190212_S4	4	1008.499755859375	1	1008.49965	1007.49238	0.63704	0.00064246	-0.033291	-3.3574E-05	0.60375	0.00060889	1008.4993734788081	40.471	0.2403	40.093	39.942	40.182	-0.37828					6	4	2	0	0	0	0.057078	1	14859	14859		115.69	0	1	4917800			22063	3596	13880	13958	21209	21209					-0.011071266903854848
NEQLLTQY	8	Unmodified	_NEQLLTQY_					0	0	0		nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1008.49965	1007.49238	0.60078	0.00060589	0.16522	0.00016663	0.766	0.00077252	1008.499658935017	40.148	0.2086	40.076	39.945	40.154	-0.072838	-0.00907	-0.00014204	NaN	131.27	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11430000			22064	3596	13880	13958							-0.011071266903854848
NEQQMPEE	8	Unmodified	_NEQQMPEE_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	HCT116MG_D190212_S4	4	502.7033996582031	2	502.703114	1003.39167	0.26441	0.00013292	0.76666	0.0003854	1.0311	0.00051832	502.7034121529015	31.11	0.41301	30.74	30.61	31.023	-0.37026					10	7	2	0	0	0	0.557	1	11280	11280		36.127	16.87	1	6853800			22065	3626	13881	13959	21210	21210					-0.10988526735536652
NEQQMPEE	8	Unmodified	_NEQQMPEE_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	502.703114	1003.39167	0.34987	0.00017588	0.42352	0.0002129	0.77339	0.00038878	502.7032678626321	30.904	0.3117	30.637	30.456	30.768	-0.26704	-0.06678	-0.0002521	NaN	36.127	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12515000			22066	3626	13881	13959							-0.10988526735536652
NEQQSVLQRIA	11	Unmodified	_NEQQSVLQRIA_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	HCT116MG_D190212_S2	2	643.3473510742188	2	643.346583	1284.67861	0.77311	0.00049738	0.20644	0.00013281	0.97956	0.00063019	643.3465948479864	40.563	0.30873	40.494	40.365	40.673	-0.069626					7	5	2	0	0	0	5.7884E-10	1	15310	15310		197.86	97.773	1	29537000			22067	1270	13882	13960	21211	21211					0.047660704781492313
NEQQSVLQRIA	11	Unmodified	_NEQQSVLQRIA_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MATCH	HCT116MG_D190212_S3	3		2	643.346583	1284.67861	0.73545	0.00047315	0.085432	5.4962E-05	0.82088	0.00052811	643.3471215536803	40.751	0.2606	40.45	40.319	40.58	-0.30161	-0.022097	-0.00014711	NaN	197.86	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2214500			22068	1270	13882	13960							0.047660704781492313
NEQSSAIVSA	10	Unmodified	_NEQSSAIVSA_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	503.25421142578125	2	503.246003	1004.47745	0.60724	0.00030559	-2.5348	-0.0012756	-1.9275	-0.00097002	503.24461195022906	28.643	0.31226	28.437	28.281	28.593	-0.20593					7	5	2	0	0	0	0.19578	1	10367	10367		59.368	0.68956	1	3469300			22069	3586	13883	13961	21212	21212					-0.024606185583706974
NEQTASCCLAA	11	Unmodified	_NEQTASCCLAA_					0	0	0			REV__ENST00000609436.1_1_10:65225198-65225663:+|nuORF	REV__ENST00000609436.1_1_10:65225198-65225663:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	555.7568969726562	2	555.731348	1109.44814	0.33204	0.00018453	1.0021	0.00055692	1.3342	0.00074145	555.7317607847098	19.388	0.26056	19.018	18.888	19.148	-0.3695					6	4	2	0	0	0	0.33772	1	6728	6728		18.373	2.6345	1	5531700	+		22070	16790	13884	13962	21213	21213					-0.10220222170528359
NERKEPFY	8	Unmodified	_NERKEPFY_					0	0	0		WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant;WDR72|p.R714Nfs*19|1|0.09|ENSG00000166415|chr15:53616065-53616066|-/CAGT|frameshift_variant;WDR72|p.M778Cfs*9|2|0.19|ENSG00000166415|chr15:53615874-53615874|T/-|frameshift_variant;ENSG00000166415|ENST00000360509|WDR72	WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant	WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7875366210938	2	541.766906	1081.51926	0.41291	0.0002237	0.0094229	5.105E-06	0.42233	0.0002288	541.7669029428753	38.602	0.26853	38.518	38.382	38.65	-0.084618					12	4	3	0	0	0	0.79062	1	14461	14461		12.532	12.532	1	72468000			22071	4850	13885	13963	21214	21214					-0.018240180791963212
NERLELEAY	9	Unmodified	_NERLELEAY_					0	0	0		TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant;ENSG00000166848|ENST00000300086|TERF2IP	TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant	TERF2IP|p.N339Ifs*12|1|0.1|ENSG00000166848|chr16:75656422-75656422|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	568.7822265625	2	568.782753	1135.55095	0.46262	0.00026313	-1.1132	-0.00063314	-0.65053	-0.00037001	568.7822578620022	40.49	0.25992	40.189	40.059	40.319	-0.30161					6	4	2	0	0	0	0.33364	1	15061	15061		27.223	3.2027	1	5572600			22072	4882	13886	13964	21215	21215					-0.011400701159118398
NERLFFYAFL	10	Unmodified	_NERLFFYAFL_					0	0	0			REV__SEMA5B|p.Q905Rfs*147|1|0.47|ENSG00000082684|chr3:122912855-122912855|G/-|frameshift_variant	REV__SEMA5B|p.Q905Rfs*147|1|0.47|ENSG00000082684|chr3:122912855-122912855|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	660.3444213867188	2	660.342781	1318.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.273	1	57.985	57.485	58.485	-0.28879								0	0	0	0.96453	1	21897	21897		1.4819	0	1		+		22073	10891	13887	13965	21216	21216					0.024419629485009864
NERPPQPQA	9	Unmodified	_NERPPQPQA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	HCT116MG_D190212_S1	1	518.7622680664062	2	518.762155	1035.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.039	1	19.039	18.539	19.539	0								0	0	0	0.67254	1	6580	6580		20.415	5.5763	1				22074	5292	13888	13966	21217	21217					-0.006577863647180493
NERPPQPQA	9	Unmodified	_NERPPQPQA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S2	2	518.7625122070312	2	518.762155	1035.50976	0.28425	0.00014746	0.23916	0.00012407	0.52341	0.00027153	518.7621410692506	19.537	0.52017	19.168	18.784	19.304	-0.3695					22	9	3	0	0	0	0.0096585	2	6747	6747;6814		114.19	60.354	1	30423000			22075	5292	13888	13966	21218;21219	21218					-0.006577863647180493
NERPPQPQA	9	Unmodified	_NERPPQPQA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S3	3	518.7623291015625	2	518.762155	1035.50976	0.25196	0.00013071	0.13821	7.1697E-05	0.39017	0.00020241	518.7621770146952	18.781	0.67695	18.85	18.406	19.083	0.069159					35	12	4	0	0	0	0.048237	2	6339	6305;6339		75.571	29.871	1	28546000			22076	5292	13888	13966	21220;21221	21221					-0.006577863647180493
NERPPQPQA	9	Unmodified	_NERPPQPQA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S4	4	518.7623291015625	2	518.762155	1035.50976	0.23808	0.00012351	0.081588	4.2325E-05	0.31967	0.00016583	518.7622132502496	19.045	0.72784	18.858	18.505	19.233	-0.18674					27	13	3	0	0	0	0.20521	1	6387	6387		40.725	14.704	1	9171200			22077	5292	13888	13966	21222	21222					-0.006577863647180493
NERPVEHW	8	Unmodified	_NERPVEHW_					0	0	0		RGS3|p.D677Gfs*6|1|0.38|ENSG00000138835|chr9:113536903-113536904|-/C|frameshift_variant;nc|ENSG00000138835|P49796-9|RGS3;nc|ENSG00000138835|P49796-5|RGS3;RGS3|p.R851Gfs*5|1|0.42|ENSG00000138835|chr9:113583958-113583958|C/-|frameshift_variant;RGS3|p.E892Rfs*27|1|0.39|ENSG00000138835|chr9:113584082-113584082|G/-|frameshift_variant;nc|ENSG00000138835|P49796-4|RGS3;ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3	RGS3|p.D677Gfs*6|1|0.38|ENSG00000138835|chr9:113536903-113536904|-/C|frameshift_variant	RGS3|p.D677Gfs*6|1|0.38|ENSG00000138835|chr9:113536903-113536904|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.793212890625	2	533.756872	1065.49919	0.6714	0.00035836	-0.5227	-0.000279	0.1487	7.9368E-05	533.7564180908481	27.249	0.26037	26.897	26.766	27.026	-0.35254					8	4	2	0	0	0	0.27865	1	9902	9902		31.268	16.43	1	7473200			22078	3597	13889	13967	21223	21223					-0.030937690191422007
NERVQQAVA	9	Unmodified	_NERVQQAVA_					0	0	0		ENSG00000147471|ENST00000328195|PLPBP;ENST00000523994.1_1_8:37620177-37624049:+|nuORF;ENST00000520073.5_1_8:37620150-37623956:+|nuORF	ENSG00000147471|ENST00000328195|PLPBP	ENSG00000147471|ENST00000328195|PLPBP	MULTI-MSMS	HCT116MG_D190212_S3	3	507.7702941894531	2	507.76998	1013.52541	0.23064	0.00011711	-0.16468	-8.3618E-05	0.065965	3.3495E-05	507.7697913423471	19.708	0.20825	19.767	19.646	19.854	0.059828					5	3	2	0	0	0	0.28785	1	6789	6789		32.037	5.1538	1	3136900			22079	3986	13890	13968	21224	21224					0.019185001523283063
NERVVVKILKP	11	Unmodified	_NERVVVKILKP_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;CSNK2A2|p.K77Rfs*3|1|0.32|ENSG00000070770|chr16:58186843-58186843|T/-|frameshift_variant	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MSMS	HCT116MG_D190212_S3	3	432.2801818847656	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.605	1	40.303	39.803	40.803	-0.30161								0	0	0	0.95976	1	15079	15079		1.2148	0.70888	1				22080	1244	13891	13969	21225	21225					0.1781017569069263
NESAIDFY	8	Unmodified	_NESAIDFY_					0	0	0		ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	HCT116MG_D190212_S3	3	958.416259765625	1	958.415253	957.407977	0.57169	0.00054792	-0.20855	-0.00019987	0.36314	0.00034804	958.4152911335035	48.003	0.20864	47.687	47.566	47.775	-0.31596					6	3	2	0	0	0	0.21275	1	18065	18065		71.134	35.089	1	2537400			22081	2735	13892	13970	21226	21226					-0.0724307750714388
NESAVIVAP	9	Unmodified	_NESAVIVAP_					0	0	0		DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;DDX60L|p.R1122Efs*29|1|0.05|ENSG00000181381|chr4:168400953-168400953|T/-|frameshift_variant;DDX60L|p.N1168Tfs*25|2|0.3|ENSG00000181381|chr4:168396113-168396113|T/-|frameshift_variant;DDX60L|p.A1208Vfs*33|1|0.16|ENSG00000181381|chr4:168395993-168395994|-/CTTTGACA|frameshift_variant;DDX60L|p.F1291Lfs*11|1|0.38|ENSG00000181381|chr4:168391582-168391582|A/-|frameshift_variant;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.N1642Mfs*9|1|0.2|ENSG00000181381|chr4:168371615-168371615|T/-|frameshift_variant;ENSG00000181381|ENST00000682922|DDX60L;ENST00000504793.1_1_4:169337857-169343051:-|nuORF;ENSG00000137628|ENST00000393743|DDX60;DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant	DDX60L|p.N1040Kfs*4|1|0.03|ENSG00000181381|chr4:168406043-168406044|-/AT|frameshift_variant;ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	HCT116MG_D190212_S3	3	900.48583984375	1	899.483273	898.475997	0.89526	0.00080527	-0.52557	-0.00047274	0.36969	0.00033253	899.4827473034975	39.34	0.21561	39.039	38.924	39.14	-0.30137					6	3	2	0	0	0	0.21258	1	14629	14629		39.95	19.535	1	3073000			22082	661;660	13893	13971	21227	21227					0.022697921435110402
NESEEVRQF	9	Unmodified	_NESEEVRQF_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	HCT116MG_D190212_S1	1	569.2620239257812	2	569.262185	1136.50982	0.41965	0.00023889	0.029332	1.6697E-05	0.44898	0.00025559	569.262119798224	29.607	0.15647	29.607	29.477	29.633	0					4	2	2	0	0	0	0.0034469	1	10835	10835		179.17	119.1	1	7658000			22083	2930	13894	13972	21228	21228					-0.052978311553715685
NESEEVRQF	9	Unmodified	_NESEEVRQF_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2623901367188	2	569.262185	1136.50982	0.24114	0.00013727	0.31791	0.00018098	0.55905	0.00031825	569.2624791757413	29.958	0.30993	29.668	29.506	29.816	-0.29056					9	5	2	0	0	0	0.0038512	1	11016	11016		152.89	101.26	1	16022000			22084	2930	13894	13972	21229	21229					-0.052978311553715685
NESEPIVVY	9	Unmodified	_NESEPIVVY_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ECE1|p.I361T|1|0.33|ENSG00000117298|chr1:21247302-21247302|A/G|missense_variant	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1049.5155029296875	1	1049.51497	1048.50769	0.44031	0.00046211	0.4873	0.00051143	0.9276	0.00097353	1049.5152475104499	44.169	0.30769	44.09	43.865	44.173	-0.078373					11	5	3	0	0	0	0.0048275	1	16759	16759		139.14	93.118	1	45380000			22085	2567	13895	13973	21230	21230					-0.01462259893173723
NESEPIVVY	9	Unmodified	_NESEPIVVY_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ECE1|p.I361T|1|0.33|ENSG00000117298|chr1:21247302-21247302|A/G|missense_variant	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1049.5157470703125	1	1049.51497	1048.50769	0.80405	0.00084386	0.37361	0.00039211	1.1777	0.001236	1049.5153312984576	44.348	0.31101	44.04	43.916	44.227	-0.30759					13	5	3	0	0	0	0.0038833	1	16587	16587		152.41	94.941	1	10904000			22086	2567	13895	13973	21231	21231					-0.01462259893173723
NESEPIVVY	9	Unmodified	_NESEPIVVY_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ECE1|p.I361T|1|0.33|ENSG00000117298|chr1:21247302-21247302|A/G|missense_variant	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.261474609375	2	525.261122	1048.50769	0.58464	0.00030709	-0.096385	-5.0627E-05	0.48826	0.00025646	525.2609425641135	44.386	0.31101	44.078	43.916	44.227	-0.30759					8	5	2	0	0	0	0.01405	1	16612	16612		103.35	59.495	1	5482000			22087	2567	13895	13973	21232	21232					-0.01462259893173723
NESEPIVVY	9	Unmodified	_NESEPIVVY_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ECE1|p.I361T|1|0.33|ENSG00000117298|chr1:21247302-21247302|A/G|missense_variant	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1049.51497	1048.50769	0.59547	0.00062495	0.85866	0.00090118	1.4541	0.0015261	1049.5158297171415	44.488	0.23778	44.115	43.934	44.172	-0.37355	0.033017	0.00043264	NaN	152.41	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3188800			22088	2567	13895	13973							-0.01462259893173723
NESFGFTA	8	Unmodified	_NESFGFTA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	HCT116MG_D190212_S2	2	872.37841796875	1	872.378474	871.371197	0.86507	0.00075467	-0.45612	-0.00039791	0.40895	0.00035676	872.3779649864259	45.888	0.3079	45.787	45.607	45.915	-0.1014					9	5	2	0	0	0	0.060005	1	17482	17482		112.59	52.204	1	23957000			22089	4945	13896	13974	21233	21233					-0.06963329333041202
NESGFESY	8	Unmodified	_NESGFESY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	932.3640747070312	1	932.363218	931.355941	0.72841	0.00067915	0.16111	0.00015021	0.88952	0.00082936	932.3633488945977	34.919	0.25993	34.622	34.492	34.752	-0.29707					6	4	2	0	0	0	0.22822	1	12903	12903		68.081	33.978	1	3521800			22090	3106	13897	13975	21234	21234					-0.11248240920895114
NESGQLVVF	9	Unmodified	_NESGQLVVF_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2;TRAM2|p.A272Vfs*83|1|0.3|ENSG00000065308|chr6:52505659-52505659|G/-|frameshift_variant	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	HCT116MG_D190212_S2	2	992.5046997070312	1	992.504737	991.497461	0.59123	0.0005868	-0.17169	-0.0001704	0.41954	0.00041639	992.504516245239	53.404	0.35939	53.215	53.069	53.429	-0.18927					10	6	2	0	0	0	0.0094709	1	20547	20547		114.65	54.575	1	26615000			22091	1154	13898	13976	21235	21235					0.0013717717223471482
NESGQLVVF	9	Unmodified	_NESGQLVVF_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2;TRAM2|p.A272Vfs*83|1|0.3|ENSG00000065308|chr6:52505659-52505659|G/-|frameshift_variant	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	HCT116MG_D190212_S3	3	992.5049438476562	1	992.504737	991.497461	0.71232	0.00070699	-0.24913	-0.00024726	0.4632	0.00045973	992.5041479876211	53.638	0.31367	53.339	53.195	53.509	-0.29946					8	5	2	0	0	0	0.023778	1	20322	20322		92.653	42.72	1	2995100			22092	1154	13898	13976	21236	21236					0.0013717717223471482
NESGTWIQY	9	Unmodified	_NESGTWIQY_					0	0	0		nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	MULTI-MSMS	HCT116MG_D190212_S2	2	1097.48779296875	1	1097.48982	1096.48254	0.82738	0.00090804	-0.77128	-0.00084648	0.056099	6.1568E-05	1097.4886288733549	47.361	0.25753	47.24	47.13	47.388	-0.12175					7	4	2	0	0	0	0.0077497	1	18081	18081		118.89	50.814	1	16290000			22093	2047	13899	13977	21237	21237					-0.06184314695747162
NESGTWIQY	9	Unmodified	_NESGTWIQY_					0	0	0		nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2486572265625	2	549.248546	1096.48254	0.55842	0.00030671	0.12755	7.0059E-05	0.68598	0.00037677	549.2486089777132	47.367	0.25801	47.245	47.078	47.336	-0.12175					7	4	2	0	0	0	0.26536	1	18092	18092		34.402	12.655	1	7864800			22094	2047	13899	13977	21238	21238					-0.06184314695747162
NESKKGILY	9	Unmodified	_NESKKGILY_					0	0	0		HPS5|p.D685Y|1|0.22|ENSG00000110756|chr11:18291829-18291829|C/A|missense_variant	HPS5|p.D685Y|1|0.22|ENSG00000110756|chr11:18291829-18291829|C/A|missense_variant	HPS5|p.D685Y|1|0.22|ENSG00000110756|chr11:18291829-18291829|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	526.2930908203125	2	526.292756	1050.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.542	1	40.542	40.042	41.042	0								0	0	0	0.768	1	15241	15241		7.9102	0	1				22095	9227	13900	13978	21239	21239					0.047697256147330336
NESKKLYGA	9	Unmodified	_NESKKLYGA_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	505.4404602050781	2	505.269281	1008.52401	0.50811	0.00025673	-0.037982	-1.9191E-05	0.47013	0.00023754	505.2692578628178	20.522	0.2086	20.522	20.383	20.592	0					7	3	3	0	0	0	0.064006	2	7151	7151;7178		67.838	33.436	1	4210200			22096	4619	13901	13979	21240;21241	21240					0.020088660635678934
NESKKLYGA	9	Unmodified	_NESKKLYGA_					0	0	0		GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	GMPS|p.S473Lfs*26|1|0.37|ENSG00000163655|chr3:155922281-155922281|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	505.26873779296875	2	505.269281	1008.52401	0.41508	0.00020972	-0.41003	-0.00020718	0.005042	2.5476E-06	505.268992662668	21.162	0.26028	20.78	20.598	20.859	-0.38288					10	4	3	0	0	0	0.0080847	1	7440	7440		118.07	68.135	1	37875000			22097	4619	13901	13979	21242	21242					0.020088660635678934
NESSYLISH	9	Unmodified	_NESSYLISH_					0	0	0		ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2490234375	2	525.248546	1048.48254	0.63514	0.00033361	0.26838	0.00014097	0.90352	0.00047457	525.248569927254	31.629	0.20799	31.38	31.25	31.458	-0.24883					6	3	2	0	0	0	0.0090481	1	11690	11690		115.69	33.802	1	16024000			22098	881	13902	13980	21243	21243					-0.03976314695751171
NESSYLISH	9	Unmodified	_NESSYLISH_					0	0	0		ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2488403320312	2	525.248546	1048.48254	0.30755	0.00016154	0.45261	0.00023773	0.76017	0.00039928	525.2485224929997	31.778	0.26033	31.508	31.378	31.638	-0.27028					7	4	2	0	0	0	0.1754	1	11641	11641		43.858	19.838	1	4452700			22099	881	13902	13980	21244	21244					-0.03976314695751171
NESSYLISH	9	Unmodified	_NESSYLISH_					0	0	0		ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	525.248546	1048.48254	0.47635	0.0002502	-0.035413	-1.86E-05	0.44094	0.0002316	525.2483666335313	31.414	0.31216	31.414	31.284	31.596	0	-0.078393	-0.00018944	NaN	115.69	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3733500			22100	881	13902	13980							-0.03976314695751171
NESSYLISH	9	Unmodified	_NESSYLISH_					0	0	0		ENST00000575285.1_1_16:3273894-3274698:-|nuORF;nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	ENST00000575285.1_1_16:3273894-3274698:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	525.248546	1048.48254	0.29126	0.00015298	-0.071437	-3.7522E-05	0.21982	0.00011546	525.7500237948523	32.043	0.31142	31.668	31.382	31.694	-0.37529	0.17519	-0.00022728	NaN	115.69	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2100700			22101	881	13902	13980							-0.03976314695751171
NESTQNWHQ	9	Unmodified	_NESTQNWHQ_					0	0	0		CNN1|p.F106Lfs*33|1|0.27|ENSG00000130176|chr19:11546893-11546893|T/-|frameshift_variant;nc|ENSG00000130176|P51911-2|CNN1;ENSG00000130176|ENST00000252456|CNN1	CNN1|p.F106Lfs*33|1|0.27|ENSG00000130176|chr19:11546893-11546893|T/-|frameshift_variant	CNN1|p.F106Lfs*33|1|0.27|ENSG00000130176|chr19:11546893-11546893|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	572.243896484375	2	572.244326	1142.4741	0.44756	0.00025611	-0.17816	-0.00010195	0.26939	0.00015416	572.2438809356898	33.84	0.25991	33.647	33.534	33.794	-0.19297					8	4	3	0	0	0	0.26422	1	12612	12612		3.9444	2.2918	1	13360000			22102	495	13903	13981	21245	21245					-0.09143868612386541
NESTSYKF	8	Unmodified	_NESTSYKF_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MSMS	HCT116MG_D190212_S1	1	488.22479248046875	2	488.224539	974.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.962	1	31.962	31.462	32.462	0								0	0	0	0.41781	1	11778	11778		47.749	15.443	1				22103	1844	13904	13982	21246	21246					-0.053713886158107016
NESTSYKF	8	Unmodified	_NESTSYKF_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-MSMS	HCT116MG_D190212_S2	2	488.2245788574219	2	488.224539	974.434526	0.32303	0.00015771	-0.10407	-5.0811E-05	0.21895	0.0001069	488.2243528502182	32.056	0.46695	31.825	31.683	32.15	-0.23009					11	8	2	0	0	0	0.12671	1	11864	11864		88.954	31.483	1	29241000			22104	1844	13904	13982	21247	21247					-0.053713886158107016
NESTSYKF	8	Unmodified	_NESTSYKF_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-MSMS	HCT116MG_D190212_S3	3	488.22454833984375	2	488.224539	974.434526	0.024065	1.1749E-05	0.15431	7.5339E-05	0.17838	8.7089E-05	488.22456432631714	32.298	0.46877	32.02	31.838	32.306	-0.27841					10	8	2	0	0	0	0.17427	1	11834	11834		78.728	30.382	1	16041000			22105	1844	13904	13982	21248	21248					-0.053713886158107016
NESTSYKF	8	Unmodified	_NESTSYKF_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-MSMS	HCT116MG_D190212_S4	4	488.22442626953125	2	488.224539	974.434526	-0.16143	-7.8812E-05	0.34207	0.00016701	0.18064	8.8194E-05	488.2247019513696	32.458	0.25942	32.079	31.897	32.157	-0.37924					6	4	2	0	0	0	0.22303	1	11826	11826		69.105	29.148	1	5006300			22106	1844	13904	13982	21249	21249					-0.053713886158107016
NESTTFVL	8	Unmodified	_NESTTFVL_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	910.4523315429688	1	910.451639	909.444362	0.76103	0.00069288	0.51229	0.00046641	1.2733	0.0011593	910.4521043372072	51.752	0.30731	51.568	51.373	51.68	-0.18369					8	5	2	0	0	0	0.21275	1	19870	19870		71.134	13.662	1	18103000			22107	1793	13905	13983	21250	21250					-0.013982006104129141
NETDYSEH	8	Unmodified	_NETDYSEH_					0	0	0			REV__ENSG00000197608|ENST00000594440|ZNF841	REV__ENSG00000197608|ENST00000594440|ZNF841	MSMS	HCT116MG_D190212_S4	4	497.6894226074219	2	497.691061	993.367569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.974	1	14.814	14.314	15.314	-0.16089								0	0	0	0.8837	1	4789	4789		4.756	0.42677	1		+		22108	14082	13906	13984	21251	21251					-0.12938043897565876
NETEIKKV	8	Unmodified	_NETEIKKV_					0	0	0			REV__REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV__REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	481.2692565917969	2	480.771657	959.528761	0.12234	5.8819E-05	-2.7665	-0.0013301	-2.6442	-0.0012713	480.77173279664794	23.168	0.3646	23.168	22.949	23.314	0					13	6	3	0	0	0	0.64404	1	8266	8266		28.487	1.6032	1	13127000	+		22109	17467	13907	13985	21252	21252					0.047377502063341126
NETEIKKV	8	Unmodified	_NETEIKKV_					0	0	0			REV__REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV__REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	481.2693176269531	2	480.771657	959.528761	0.19111	9.1883E-05	-2.933	-0.0014101	-2.7419	-0.0013182	480.77157645447977	23.658	0.41649	23.275	23.091	23.508	-0.38324					21	7	4	0	0	0	0.64404	1	8484	8484		28.487	1.6032	1	112800000	+		22110	17467	13907	13985	21253	21253					0.047377502063341126
NETEQHTY	8	Unmodified	_NETEQHTY_					0	0	0		SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	SMG7|p.M849*|1|0.31|ENSG00000116698|chr1:183546132-183546132|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	511.2152099609375	2	511.214703	1020.41485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.389	1	18.025	17.525	18.525	-0.36325								0	0	0	0.69969	1	6317	6317		30.637	1.555	1				22111	2530	13908	13986	21254	21254					-0.09453764626562133
NETGAFFF	8	Unmodified	_NETGAFFF_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	HCT116MG_D190212_S2	2	932.4155883789062	1	932.414859	931.407583	0.88459	0.0008248	-0.0028321	-2.6407E-06	0.88176	0.00082216	932.4148198441585	57.775	0.20868	57.6	57.469	57.678	-0.17494					7	3	3	0	0	0	0.052582	1	22317	22317		120.45	35.094	1	46816000			22112	4759	13909	13987	21255	21255					-0.06086452436318268
NETGAFFF	8	Unmodified	_NETGAFFF_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	HCT116MG_D190212_S3	3	932.4149169921875	1	932.414859	931.407583	1.0711	0.00099871	-0.56787	-0.00052949	0.50324	0.00046923	932.4140372024343	57.865	0.20846	57.591	57.464	57.673	-0.27434					7	3	3	0	0	0	0.052582	1	22005	22005		120.45	35.094	1	7989100			22113	4759	13909	13987	21256	21256					-0.06086452436318268
NETGAFFF	8	Unmodified	_NETGAFFF_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	HCT116MG_D190212_S4	4	932.4150390625	1	932.414859	931.407583	0.91552	0.00085365	-0.11411	-0.0001064	0.80141	0.00074725	932.414529608891	57.834	0.26049	57.54	57.357	57.618	-0.29465					5	4	2	0	0	0	0.14283	1	21744	21744		85.272	21.036	1	2935300			22114	4759	13909	13987	21257	21257					-0.06086452436318268
NETIGTLAF	9	Unmodified	_NETIGTLAF_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MSMS	HCT116MG_D190212_S2	2	483.2505798339844	2	483.250557	964.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.755	1	34.597	34.097	35.097	-0.15834								0	0	0	0.18646	1	12941	12941		48.346	2.3249	1				22115	2245	13910	13988	21258	21258					0.002897747979545784
NETLIVSKF	9	Unmodified	_NETLIVSKF_					0	0	0		ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	ENSG00000116455|ENST00000235090|WDR77	MSMS	HCT116MG_D190212_S2	2	525.7949829101562	2	525.795132	1049.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.08	1	45.978	45.478	46.478	-0.1014								0	0	0	0.26976	1	17542	17542		42.312	19.576	1				22116	2516	13911	13989	21259	21259					0.052906097574805244
NETLVITYY	9	Unmodified	_NETLVITYY_					0	0	0			REV__ENSG00000171044|ENST00000416569|XKR6	REV__ENSG00000171044|ENST00000416569|XKR6	MULTI-MSMS	HCT116MG_D190212_S3	3	1116.5662841796875	1	1115.56192	1114.55464	0.37927	0.00042309	0.55575	0.00061997	0.93501	0.0010431	1115.5622567391736	51.929	0.49437	51.62	51.436	51.931	-0.30927					22	9	3	0	0	0	0.23138	1	19732	19732		37.974	1.847	1	61193000	+		22117	13328	13912	13990	21260	21260					0.0019459965794794698
NETNGFISA	9	Unmodified	_NETNGFISA_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	952.4368896484375	1	952.437051	951.429775	0.02023	1.9268E-05	-0.51545	-0.00049094	-0.49522	-0.00047167	952.4362290309489	38.358	0.26083	38.358	38.227	38.488	0					7	4	2	0	0	0	0.035349	1	14370	14370		81.89	45.846	1	13121000			22118	4255	13913	13991	21261	21261					-0.047882727585715656
NETNGFISA	9	Unmodified	_NETNGFISA_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	952.4375610351562	1	952.437051	951.429775	0.58822	0.00056025	0.082552	7.8625E-05	0.67078	0.00063887	952.4370006972727	38.473	0.36915	38.385	38.172	38.541	-0.087791					14	6	3	0	0	0	0.0077497	1	14443	14443		118.89	58.821	1	84321000			22119	4255	13913	13991	21262	21262					-0.047882727585715656
NETNGFISA	9	Unmodified	_NETNGFISA_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MSMS	HCT116MG_D190212_S2	2	476.7221984863281	2	476.722164	951.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.507	1	38.422	37.922	38.922	-0.084618								0	0	0	0.22299	1	14465	14465		45.7	13.583	1				22120	4255	13913	13991	21263	21263					-0.047882727585715656
NETNGFISA	9	Unmodified	_NETNGFISA_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	952.4375610351562	1	952.437051	951.429775	0.65809	0.00062679	-0.092905	-8.8487E-05	0.56519	0.00053831	952.436916333351	38.675	0.41634	38.374	38.144	38.561	-0.30137					21	7	4	0	0	0	0.0077497	1	14320	14320		118.89	58.821	1	39492000			22121	4255	13913	13991	21264	21264					-0.047882727585715656
NETNGFISA	9	Unmodified	_NETNGFISA_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	476.722412109375	2	476.722164	951.429775	0.075269	3.5883E-05	0.18268	8.7089E-05	0.25795	0.00012297	476.72217003860374	38.627	0.36459	38.326	38.196	38.561	-0.30137					9	6	2	0	0	0	0.077982	1	14330	14330		62.573	28.47	1	11079000			22122	4255	13913	13991	21265	21265					-0.047882727585715656
NETNGFISA	9	Unmodified	_NETNGFISA_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	952.4373779296875	1	952.437051	951.429775	0.45368	0.0004321	0.1122	0.00010686	0.56587	0.00053896	952.4369462466752	38.747	0.35167	38.366	38.187	38.539	-0.38163					13	6	3	0	0	0	0.012496	1	14216	14216		107.19	38.082	1	10534000			22123	4255	13913	13991	21266	21266					-0.047882727585715656
NETNGFISA	9	Unmodified	_NETNGFISA_					0	0	0		ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	476.72247314453125	2	476.722164	951.429775	0.41953	0.0002	0.2	9.5342E-05	0.61953	0.00029534	476.7222167817035	38.73	0.30688	38.348	38.232	38.539	-0.38163					6	5	2	0	0	0	0.64246	1	14245	14245		8.7454	0.15213	1	2447600			22124	4255	13913	13991	21267	21267					-0.047882727585715656
NETVFTVH	8	Unmodified	_NETVFTVH_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MSMS	HCT116MG_D190212_S3	3	474.2098083496094	2	473.735074	945.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.691	1	35.392	34.892	35.892	-0.29922								0	0	0	0.00092286	1	13163	13163		123.1	41.232	1				22125	2250	13914	13992	21268	21268					-0.019313785162808017
NETVFTVH	8	Unmodified	_NETVFTVH_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MSMS	HCT116MG_D190212_S3	3	473.7361755371094	2	473.735074	945.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.747	1	35.448	34.948	35.948	-0.29922								0	0	0	0.29906	1	13185	13185		54.774	20.671	1				22126	2250	13914	13992	21269	21269					-0.019313785162808017
NETVHGVEF	9	Unmodified	_NETVHGVEF_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.79248046875	2	516.243264	1030.47197	0.17771	9.1741E-05	-1.2017	-0.00062039	-1.024	-0.00052864	516.2424284456991	38.492	0.26569	38.408	38.278	38.544	-0.084618					8	4	2	0	0	0	0.1898	1	14460	14460		38.176	5.8701	1	21959000			22127	3326	13915	13993	21270	21270					-0.04204297350179331
NETVHGVEF	9	Unmodified	_NETVHGVEF_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	516.243264	1030.47197	-0.30744	-0.00015871	-0.49363	-0.00025483	-0.80107	-0.00041355	516.242967609881	38.477	0.26081	38.477	38.332	38.592	0	0.034759	0.00026687	NaN	38.176	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6727100			22128	3326	13915	13993							-0.04204297350179331
NEVAVMAT	8	Oxidation (M)	_NEVAVM(Oxidation (M))AT_		NEVAVM(1)AT		NEVAVM(52)AT	0	0	1			REV__ENST00000440850.5_1_3:195704061-195712605:-|nuORF	REV__ENST00000440850.5_1_3:195704061-195712605:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	425.5276794433594	2	425.702386	849.390218	0.04507	1.9186E-05	-0.040894	-1.7409E-05	0.0041761	1.7778E-06	425.70232543102975	21.112	0.20838	20.729	20.598	20.807	-0.38288					6	3	2	0	0	0	0.37603	1	7407	7407		52.268	10.174	1	12487000	+		22129	15644	13916	13994	21271	21271		162			-0.04050116033647555
NEVAVMAT	8	Oxidation (M)	_NEVAVM(Oxidation (M))AT_		NEVAVM(1)AT		NEVAVM(52)AT	0	0	1			REV__ENST00000440850.5_1_3:195704061-195712605:-|nuORF	REV__ENST00000440850.5_1_3:195704061-195712605:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	425.5276794433594	2	425.702386	849.390218	0.04507	1.9186E-05	-0.040894	-1.7409E-05	0.0041761	1.7778E-06	425.70232543102975	21.112	0.20838	20.729	20.598	20.807	-0.38288					6	3	2	0	0	0	0.21625	1	7407	7407		52.268	16.141	1	12487000	+		22130	15644	13916	13994	21272	21272		162			-0.04050116033647555
NEVDFQEY	8	Unmodified	_NEVDFQEY_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S1	1	1043.4320068359375	1	1043.43163	1042.42436	0.57105	0.00059585	-0.51037	-0.00053253	0.060678	6.3314E-05	1043.431026168048	40.409	0.31072	40.409	40.228	40.539	0					15	5	4	0	0	0	0.038852	1	15188	15188		136.33	87.988	1	108990000			22131	6044	13917	13995	21273	21273					-0.0951599634104241
NEVDFQEY	8	Unmodified	_NEVDFQEY_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S1	1	522.2194213867188	2	522.219454	1042.42436	0.12977	6.7767E-05	-0.51855	-0.0002708	-0.38878	-0.00020303	522.2191094730728	40.409	0.25895	40.409	40.28	40.539	0					10	4	3	0	0	0	0.033555	1	15189	15189		141.83	67.404	1	82183000			22132	6044	13917	13995	21274	21274					-0.0951599634104241
NEVDFQEY	8	Unmodified	_NEVDFQEY_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S2	2	1043.43212890625	1	1043.43163	1042.42436	0.91693	0.00095675	-0.023015	-2.4015E-05	0.89391	0.00093274	1043.4315575166195	40.46	0.72395	40.391	40.157	40.881	-0.069626					35	13	4	0	0	0	0.038852	1	15238	15238		136.33	78.862	1	712960000			22133	6044	13917	13995	21275	21275					-0.0951599634104241
NEVDFQEY	8	Unmodified	_NEVDFQEY_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S2	2	522.2197875976562	2	522.219454	1042.42436	0.52069	0.00027191	0.039753	2.076E-05	0.56044	0.00029267	522.2194428517738	40.455	0.87886	40.385	40.157	41.036	-0.069626					35	16	4	0	0	0	0.20876	2	15345	15340;15345		71.922	37.82	1	266790000			22134	6044	13917	13995	21276;21277	21277					-0.0951599634104241
NEVDFQEY	8	Unmodified	_NEVDFQEY_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S3	3	1043.4322509765625	1	1043.43163	1042.42436	0.6692	0.00069826	0.028983	3.0242E-05	0.69818	0.0007285	1043.4315871569127	40.647	0.78238	40.345	40.163	40.945	-0.30161					49	14	5	0	0	0	0.038852	1	15076	15076		136.33	78.862	1	457050000			22135	6044	13917	13995	21278	21278					-0.0951599634104241
NEVDFQEY	8	Unmodified	_NEVDFQEY_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2196655273438	2	522.219454	1042.42436	0.43083	0.00022499	-0.020309	-1.0606E-05	0.41052	0.00021438	522.219394400769	40.647	0.78147	40.345	40.111	40.893	-0.30161					40	14	4	0	0	0	0.033555	2	15077	15077;15261		141.83	49.004	1	270410000			22136	6044	13917	13995	21279;21280	21279					-0.0951599634104241
NEVDFQEY	8	Unmodified	_NEVDFQEY_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S4	4	1043.430908203125	1	1043.43163	1042.42436	0.63026	0.00065763	0.1114	0.00011623	0.74166	0.00077387	1043.4316312699593	40.77	0.61848	40.392	40.182	40.801	-0.37828					31	12	4	0	0	0	0.052582	1	14945	14945		120.45	62.979	1	107140000			22137	6044	13917	13995	21281	21281					-0.0951599634104241
NEVDFQEY	8	Unmodified	_NEVDFQEY_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	HCT116MG_D190212_S4	4	522.219482421875	2	522.219454	1042.42436	0.37019	0.00019332	0.051648	2.6972E-05	0.42183	0.00022029	522.2194107699979	40.771	0.66446	40.393	40.182	40.847	-0.37828					30	13	4	0	0	0	0.045718	1	14947	14947		128.37	53.943	1	63263000			22138	6044	13917	13995	21282	21282					-0.0951599634104241
NEVDGEYRY	9	Unmodified	_NEVDGEYRY_					0	0	0		nc|ENSG00000141956|P57071|PRDM15;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MSMS	HCT116MG_D190212_S1	1	572.7488403320312	2	572.74891	1143.48327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.37	1	28.37	27.87	28.87	0								0	0	0	0.2496	1	10331	10331		43.772	15.278	1				22139	9482	13918	13996	21283	21283					-0.08273520046691374
NEVDGEYRY	9	Unmodified	_NEVDGEYRY_					0	0	0		nc|ENSG00000141956|P57071|PRDM15;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MULTI-MSMS	HCT116MG_D190212_S3	3	572.748779296875	2	572.74891	1143.48327	0.70327	0.0004028	-0.25893	-0.0001483	0.44434	0.0002545	572.748490602782	28.693	0.36434	28.487	28.229	28.593	-0.20593					8	6	2	0	0	0	0.012596	1	10409	10409		106.94	77.859	1	8806100			22140	9482	13918	13996	21284	21284					-0.08273520046691374
NEVDGEYRY	9	Unmodified	_NEVDGEYRY_					0	0	0		nc|ENSG00000141956|P57071|PRDM15;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MSMS	HCT116MG_D190212_S4	4	572.7488403320312	2	572.74891	1143.48327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.913	1	28.572	28.072	29.072	-0.34059								0	0	0	0.57787	1	10418	10418		24.991	6.6179	1				22141	9482	13918	13996	21285	21285					-0.08273520046691374
NEVEAVKV	8	Unmodified	_NEVEAVKV_					0	0	0		ENSG00000185624|ENST00000331483|P4HB;P4HB|p.A429V|1|0.14|ENSG00000185624|chr17:81845634-81845634|G/A|missense_variant	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	HCT116MG_D190212_S1	1	444.2454528808594	2	444.245275	886.475997	-0.018213	-8.0912E-06	0.15147	6.7288E-05	0.13325	5.9197E-05	444.2452195407845	30.03	0.35128	30.03	29.841	30.192	0					12	6	3	0	0	0	0.095352	1	10999	10999		96.111	38.64	1	25207000			22142	5837	13919	13997	21286	21286					0.02821792143527091
NEVEAVKV	8	Unmodified	_NEVEAVKV_					0	0	0		ENSG00000185624|ENST00000331483|P4HB;P4HB|p.A429V|1|0.14|ENSG00000185624|chr17:81845634-81845634|G/A|missense_variant	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	HCT116MG_D190212_S2	2	887.4839477539062	1	887.483273	886.475997	0.5707	0.00050648	0.15605	0.00013849	0.72675	0.00064498	887.483110951542	30.492	0.46255	30.208	30.028	30.491	-0.28453					11	8	2	0	0	0	0.019374	1	11216	11216		193.29	97.01	1	69915000			22143	5837	13919	13997	21287	21287					0.02821792143527091
NEVEAVKV	8	Unmodified	_NEVEAVKV_					0	0	0		ENSG00000185624|ENST00000331483|P4HB;P4HB|p.A429V|1|0.14|ENSG00000185624|chr17:81845634-81845634|G/A|missense_variant	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MATCH	HCT116MG_D190212_S1	1		1	887.483273	886.475997	0.62829	0.0005576	-0.062676	-5.5623E-05	0.56561	0.00050197	887.4831928658156	30.05	0.25948	30.05	29.841	30.1	0	-0.07905	-0.00016045	NaN	193.29	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3394200			22144	5837	13919	13997							0.02821792143527091
NEVEIEKL	8	Unmodified	_NEVEIEKL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	HCT116MG_D190212_S1	1	487.7646179199219	2	487.263665	972.512776	-0.58564	-0.00028536	0.092899	4.5266E-05	-0.49274	-0.00024009	487.2635721755746	38.306	0.26044	38.306	38.123	38.384	0					7	4	2	0	0	0	0.12475	1	14349	14349		89.401	13.64	1	18314000			22145	1270	13920	13998	21288	21288					0.025420439694244124
NEVEIEKL	8	Unmodified	_NEVEIEKL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	HCT116MG_D190212_S2	2	487.2635498046875	2	487.263665	972.512776	0.10755	5.2407E-05	0.068066	3.3166E-05	0.17562	8.5573E-05	487.2636429652629	38.338	0.52018	38.245	37.908	38.428	-0.09301					13	9	2	0	0	0	0.10825	1	14407	14407		93.166	13.57	1	53240000			22146	1270	13920	13998	21289	21289					0.025420439694244124
NEVEIEKL	8	Unmodified	_NEVEIEKL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MSMS	HCT116MG_D190212_S3	3	487.2640075683594	2	487.263665	972.512776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.635	1	38.334	37.834	38.834	-0.30137								0	0	0	0.12223	1	14318	14318		79.596	13.14	1				22147	1270	13920	13998	21290	21290					0.025420439694244124
NEVEKCTKY	9	Unmodified	_NEVEKCTKY_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S2	2	557.2667846679688	2	557.265881	1112.51721	0.47796	0.00026635	0.34557	0.00019257	0.82353	0.00045893	557.2660132206039	22.255	0.20793	21.869	21.739	21.947	-0.3852					8	3	3	0	0	0	0.054316	1	7886	7886		72.59	36.083	1	23559000			22148	2480	13921	13999	21291	21291					-0.03454814879319201
NEVEKTANL	9	Unmodified	_NEVEKTANL_					0	0	0		NOSTRIN|p.N191Tfs*9|1|0.33|ENSG00000163072|chr2:168843053-168843053|A/-|frameshift_variant;NOSTRIN|p.N191Kfs*36|1|0.15|ENSG00000163072|chr2:168843052-168843053|-/A|frameshift_variant;NOSTRIN|p.L407*|1|0.21|ENSG00000163072|chr2:168860830-168860830|T/-|frameshift_variant;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN;NOSTRIN|p.K461Rfs*5|1|0.24|ENSG00000163072|chr2:168862044-168862044|A/-|frameshift_variant;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	NOSTRIN|p.N191Tfs*9|1|0.33|ENSG00000163072|chr2:168843053-168843053|A/-|frameshift_variant	NOSTRIN|p.N191Tfs*9|1|0.33|ENSG00000163072|chr2:168843053-168843053|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	509.7510986328125	2	509.264196	1016.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.978	1	19.978	19.478	20.478	0								0	0	0	0.64498	1	6958	6958		21.747	0	1				22149	4577	13922	14000	21292	21292					0.006242583383254896
NEVEKTMEY	9	Oxidation (M)	_NEVEKTM(Oxidation (M))EY_		NEVEKTM(1)EY		NEVEKTM(44)EY	0	0	1		ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	MULTI-MSMS	HCT116MG_D190212_S1	1	579.7532958984375	2	579.752804	1157.49105	0.49681	0.00028803	-0.27307	-0.00015831	0.22374	0.00012972	579.7526673989299	21.828	0.20844	21.828	21.698	21.906	0					5	3	2	0	0	0	0.17622	1	7717	7717		43.772	21.036	1	8246600			22150	3075	13923	14001	21293	21293		70			-0.08139128841457932
NEVEKTMEY	9	Oxidation (M)	_NEVEKTM(Oxidation (M))EY_		NEVEKTM(1)EY		NEVEKTM(150)EY	0	0	1		ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	MULTI-MSMS	HCT116MG_D190212_S2	2	579.7529296875	2	579.752804	1157.49105	0.56184	0.00032573	0.6066	0.00035168	1.1684	0.0006774	579.7529513013882	22.255	0.25953	21.869	21.739	21.999	-0.3852					6	4	2	0	0	0	0.0041644	1	7878	7878		148.27	102.57	1	19747000			22151	3075	13923	14001	21294	21294		70			-0.08139128841457932
NEVEKTMEY	9	Oxidation (M)	_NEVEKTM(Oxidation (M))EY_		NEVEKTM(1)EY		NEVEKTM(76)EY	0	0	1		ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	MULTI-MSMS	HCT116MG_D190212_S3	3	579.753662109375	2	579.752804	1157.49105	0.44863	0.00026009	0.69498	0.00040292	1.1436	0.00066301	579.7532764094556	21.755	0.2099	21.773	21.641	21.851	0.018446					5	3	2	0	0	0	0.048237	1	7603	7603		75.571	46.489	1	5530200			22152	3075	13923	14001	21295	21295		70			-0.08139128841457932
NEVEKTMEY	9	Unmodified	_NEVEKTMEY_					0	0	0		ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	MULTI-MSMS	HCT116MG_D190212_S1	1	571.7557373046875	2	571.755346	1141.49614	0.27112	0.00015501	0.24156	0.00013811	0.51268	0.00029313	571.7554091884593	30.11	0.29918	30.11	29.893	30.192	0					10	5	2	0	0	0	0.0068642	1	11021	11021		121.35	79.506	1	16295000			22153	3075	13923	14002	21296	21296					-0.06894824978826364
NEVEKTMEY	9	Unmodified	_NEVEKTMEY_					0	0	0		ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	MULTI-MSMS	HCT116MG_D190212_S2	2	571.7550659179688	2	571.755346	1141.49614	0.082603	4.7229E-05	-0.23501	-0.00013437	-0.15241	-8.714E-05	571.7551346629378	30.389	0.30829	30.105	29.925	30.233	-0.28453					12	5	3	0	0	0	0.11363	1	11171	11171		55.503	32.766	1	210120000			22154	3075	13923	14002	21297	21297					-0.06894824978826364
NEVEKTMEY	9	Unmodified	_NEVEKTMEY_					0	0	0		ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	MULTI-MSMS	HCT116MG_D190212_S4	4	571.7557983398438	2	571.755346	1141.49614	0.53659	0.0003068	0.033559	1.9187E-05	0.57015	0.00032599	571.7552385901362	30.63	0.236	30.266	30.173	30.409	-0.36416					18	12	2	0	0	0	0.011132	1	11082	11082		110.55	62.804	1	10892000			22155	3075	13923	14002	21298	21298					-0.06894824978826364
NEVEQRHTL	9	Unmodified	_NEVEQRHTL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;TPR|p.E856D|1|0.2|ENSG00000047410|chr1:186351372-186351372|T/G|missense_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S1	1	563.2860717773438	2	563.285994	1124.55744	0.53541	0.00030159	-0.19225	-0.00010829	0.34316	0.00019329	563.2856480881543	20.774	0.20852	20.774	20.644	20.852	0					8	3	3	0	0	0	0.0010417	1	7288	7288		192.32	116.56	1	10758000			22156	1027;18285	13924	14003	21299	21299					0.00013867835468772682
NEVEQRHTL	9	Unmodified	_NEVEQRHTL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;TPR|p.E856D|1|0.2|ENSG00000047410|chr1:186351372-186351372|T/G|missense_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	563.2859497070312	2	563.285994	1124.55744	0.35353	0.00019914	0.72109	0.00040618	1.0746	0.00060531	563.2865184446077	21.474	0.36274	21.091	20.91	21.273	-0.38288					12	6	3	0	0	0	0.0028865	1	7561	7561		182.24	93.283	1	52546000			22157	1027;18285	13924	14003	21300	21300					0.00013867835468772682
NEVEQRHTL	9	Unmodified	_NEVEQRHTL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.V1142Efs*26|1|0.08|ENSG00000047410|chr1:186344083-186344084|-/TT|frameshift_variant;TPR|p.E1141Dfs*29|1|0.08|ENSG00000047410|chr1:186344085-186344086|-/CAGGTAAA|frameshift_variant;TPR|p.E856D|1|0.2|ENSG00000047410|chr1:186351372-186351372|T/G|missense_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S3	3	563.2861328125	2	563.285994	1124.55744	0.28002	0.00015773	0.053559	3.0169E-05	0.33358	0.0001879	563.285919866284	20.538	0.20834	20.573	20.402	20.61	0.034473					6	3	2	0	0	0	0.018739	1	7122	7122		97.741	57.791	1	4009100			22158	1027;18285	13924	14003	21301	21301					0.00013867835468772682
NEVETGVH	8	Unmodified	_NEVETGVH_					0	0	0		ENST00000415814.6_2_3:17550096-17784135:-|nuORF	ENST00000415814.6_2_3:17550096-17784135:-|nuORF	ENST00000415814.6_2_3:17550096-17784135:-|nuORF	MSMS	HCT116MG_D190212_S2	2	442.7328186035156	2	442.709057	883.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.6	1	17.246	16.746	17.746	-0.35457								0	0	0	0.51868	1	6000	6000		42.095	7.9921	1				22159	7754	13925	14004	21302	21302					-0.04280541930029358
NEVEVQEGF	9	Unmodified	_NEVEVQEGF_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MSMS	HCT116MG_D190212_S1	1	525.7404174804688	2	525.740554	1049.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.52	1	39.52	39.02	40.02	0								0	0	0	0.077161	1	14828	14828		62.573	31.936	1				22160	3548	13926	14005	21303	21303					-0.05620020932656189
NEVFLKKTVK	10	Unmodified	_NEVFLKKTVK_					0	0	0			REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF	REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF	MSMS	HCT116MG_D190212_S1	1	603.7717895507812	2	603.366256	1204.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.001	1	36.001	35.501	36.501	0								0	0	0	0.89062	1	13410	13410		17.113	7.039	1		+		22161	16537	13927	14006	21304	21304					0.12378822499636044
NEVFPLVGSV	10	Unmodified	_NEVFPLVGSV_					0	0	0			REV__ENSG00000186106|ENST00000335659|ANKRD46	REV__ENSG00000186106|ENST00000335659|ANKRD46	MSMS	HCT116MG_D190212_S3	3	530.7329711914062	2	530.787307	1059.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.771	1	40.469	39.969	40.969	-0.30161								0	0	0	0.88085	1	15146	15146		18.373	2.224	1		+		22162	13875	13928	14007	21305	21305					0.03266323240427482
NEVHLVVM	8	Unmodified	_NEVHLVVM_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.P4047Ifs*4|1|0.4|ENSG00000127481|chr1:19106932-19106933|GG/-|frameshift_variant;UBR4|p.C4515Wfs*2|1|0.06|ENSG00000127481|chr1:19095626-19095626|G/-|frameshift_variant;UBR4|p.L4771Cfs*7|1|0.25|ENSG00000127481|chr1:19088878-19088878|G/-|frameshift_variant	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	HCT116MG_D190212_S3	3	470.74969482421875	2	470.74967	939.484787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.097	1	44.787	44.287	45.287	-0.30927								0	0	0	0.55695	1	16875	16875		39.95	18.203	1				22163	2966	13929	14008	21306	21306					0.012624425083572532
NEVIFSNFKF	10	Unmodified	_NEVIFSNFKF_					0	0	0		tr|U7SLJ4|U7SLJ4_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01951PE=4SV=1	tr|U7SLJ4|U7SLJ4_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01951PE=4SV=1	tr|U7SLJ4|U7SLJ4_FUSNUTransposaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01951PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	622.8164672851562	2	622.819138	1243.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.357	1	37.357	36.857	37.857	0								0	0	0	0.90892	1	13955	13955		13.906	4.5229	1				22164	18338	13930	14009	21307	21307					0.011656836775046031
NEVIMTIGF	9	Unmodified	_NEVIMTIGF_					0	0	0		ENST00000555522.1_1_14:75469672-75471687:+|nuORF;ENSG00000119718|ENST00000266126|EIF2B2	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.27001953125	2	512.26261	1022.51067	0.34288	0.00017565	-0.25409	-0.00013016	0.088793	4.5485E-05	512.2624039407872	57.36	0.20767	57.185	57.055	57.263	-0.17494					5	3	2	0	0	0	0.21251	1	22140	22140		39.957	11.47	1	35032000			22165	2661	13931	14010	21308	21308					0.0003129195997644274
NEVIMTIGF	9	Unmodified	_NEVIMTIGF_					0	0	0		ENST00000555522.1_1_14:75469672-75471687:+|nuORF;ENSG00000119718|ENST00000266126|EIF2B2	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1023.5175170898438	1	1023.51794	1022.51067	0.72182	0.00073879	0.029038	2.9721E-05	0.75085	0.00076851	1023.5178721775736	57.36	0.20767	57.185	57.055	57.263	-0.17494					6	3	2	0	0	0	0.15273	1	22166	22166		47.749	7.799	1	25149000			22166	2661	13931	14010	21309	21309					0.0003129195997644274
NEVIMTIGF	9	Unmodified	_NEVIMTIGF_					0	0	0		ENST00000555522.1_1_14:75469672-75471687:+|nuORF;ENSG00000119718|ENST00000266126|EIF2B2	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	ENST00000555522.1_1_14:75469672-75471687:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1023.51794	1022.51067	0.81337	0.0008325	-0.28227	-0.00028891	0.5311	0.00054359	1023.5171909721088	57.126	0.15479	57.126	56.997	57.152	0	-0.029148	-0.00024318	NaN	47.749	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17684000			22167	2661	13931	14010							0.0003129195997644274
NEVISKLY	8	Unmodified	_NEVISKLY_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S1	1	483.2684326171875	2	483.26875	964.522947	-0.029103	-1.4064E-05	-0.81274	-0.00039277	-0.84184	-0.00040684	483.2682399371556	39.137	0.39081	39.137	38.955	39.346	0					12	8	2	0	0	0	0.0087514	1	14676	14676		165.72	47.652	1	85531000			22168	4280	13932	14011	21310	21310					0.03926651694666816
NEVISKLY	8	Unmodified	_NEVISKLY_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S2	2	483.2688903808594	2	483.26875	964.522947	0.39876	0.00019271	0.05954	2.8774E-05	0.4583	0.00022148	483.2686158243363	39.174	0.41255	39.096	38.916	39.328	-0.077835					22	7	4	0	0	0	0.020449	1	14719	14719		152.89	23.114	1	455790000			22169	4280	13932	14011	21311	21311					0.03926651694666816
NEVISKLY	8	Unmodified	_NEVISKLY_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S2	2	965.5304565429688	1	965.530224	964.522947	0.85243	0.00082305	-0.27467	-0.0002652	0.57776	0.00055785	965.5298212716787	39.174	0.2581	39.096	38.968	39.226	-0.077835					11	4	3	0	0	0	0.0087514	1	14738	14738		165.72	34.453	1	87728000			22170	4280	13932	14011	21312	21312					0.03926651694666816
NEVISKLY	8	Unmodified	_NEVISKLY_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2686767578125	2	483.26875	964.522947	0.17556	8.4843E-05	0.32796	0.00015849	0.50352	0.00024334	483.26873566979003	39.415	0.46966	39.113	38.82	39.29	-0.30137					22	8	4	0	0	0	0.0087514	1	14612	14612		165.72	35.948	1	117530000			22171	4280	13932	14011	21313	21313					0.03926651694666816
NEVISKLY	8	Unmodified	_NEVISKLY_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S3	3	965.5306396484375	1	965.530224	964.522947	0.60133	0.0005806	-0.18286	-0.00017656	0.41847	0.00040405	965.5299746146356	39.415	0.21355	39.113	38.979	39.192	-0.30137					6	3	2	0	0	0	0.020449	1	14636	14636		152.89	52.514	1	11139000			22172	4280	13932	14011	21314	21314					0.03926651694666816
NEVISKLY	8	Unmodified	_NEVISKLY_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S4	4	483.2686767578125	2	483.26875	964.522947	0.16761	8.1002E-05	-0.14246	-6.8847E-05	0.025151	1.2155E-05	483.2684254763616	39.547	0.28294	39.167	38.971	39.254	-0.38055					30	14	3	0	0	0	0.034969	2	14522	14516;14522		140.63	33.693	1	43501000			22173	4280	13932	14011	21315;21316	21316					0.03926651694666816
NEVIVKVHA	9	Unmodified	_NEVIVKVHA_					0	0	0		nc|ENSG00000130347|Q8WWV3-3|RTN4IP1;ENSG00000130347|ENST00000369063|RTN4IP1	nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	MULTI-MSMS	HCT116MG_D190212_S2	2	504.79583740234375	2	504.795466	1007.57638	0.48532	0.00024499	-0.075411	-3.8067E-05	0.40991	0.00020692	504.7954185815416	25.805	0.20707	25.436	25.291	25.498	-0.36914					6	3	2	0	0	0	0.55223	1	9326	9326		13.906	2.2658	1	20225000			22174	3074	13933	14012	21317	21317					0.07289449197173781
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		ENST00000473087.1_1_2:10822102-10830002:-|nuORF;nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	ENST00000473087.1_1_2:10822102-10830002:-|nuORF	ENST00000473087.1_1_2:10822102-10830002:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	483.26849365234375	2	483.26875	964.522947	0.3433	0.00016591	-0.44732	-0.00021617	-0.10401	-5.0266E-05	483.2685221097664	42.525	0.31234	42.455	42.273	42.585	-0.069984					9	5	2	0	0	0	0.051049	1	16102	16102		122.18	47.25	1	66149000			22175	2486	13934	14013	21318	21318					0.039266516946554475
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		ENST00000473087.1_1_2:10822102-10830002:-|nuORF;nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	ENST00000473087.1_1_2:10822102-10830002:-|nuORF	ENST00000473087.1_1_2:10822102-10830002:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2685546875	2	483.26875	964.522947	0.26367	0.00012743	0.14812	7.1582E-05	0.41179	0.00019901	483.26864757663213	42.79	0.26009	42.486	42.3	42.56	-0.30472					10	4	3	0	0	0	0.010489	1	15953	15953		163.04	70.545	1	12753000			22176	2486	13934	14013	21319	21319					0.039266516946554475
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		ENST00000473087.1_1_2:10822102-10830002:-|nuORF;nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	ENST00000473087.1_1_2:10822102-10830002:-|nuORF	ENST00000473087.1_1_2:10822102-10830002:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	483.26898193359375	2	483.26875	964.522947	0.12937	6.2519E-05	0.36695	0.00017733	0.49632	0.00023985	483.26891325507034	42.89	0.19265	42.515	42.357	42.549	-0.37493					5	3	2	0	0	0	0.054833	1	15792	15792		118.07	46.146	1	4117600			22177	2486	13934	14013	21320	21320					0.039266516946554475
NEVKLWTF	8	Unmodified	_NEVKLWTF_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	HCT116MG_D190212_S2	2	518.7769165039062	2	518.776742	1035.53893	0.30043	0.00015585	0.56237	0.00029174	0.86279	0.0004476	518.7767886242146	55.385	0.25444	55.199	55.021	55.276	-0.18565					9	4	3	0	0	0	0.065346	1	21378	21378		106.94	66.983	1	44801000			22178	5723	13935	14014	21321	21321					0.022583579315323732
NEVKVNGM	8	Unmodified	_NEVKVNGM_					0	0	0		REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;REV1|p.M392*|1|0.28|ENSG00000135945|chr2:99438640-99438640|T/-|frameshift_variant;nc|ENSG00000135945|Q9UBZ9-3|REV1;REV1|p.M392Nfs*12|1|0.38|ENSG00000135945|chr2:99438639-99438640|-/T|frameshift_variant;REV1|p.T177M|1|0.04|ENSG00000135945|chr2:99439284-99439284|G/A|missense_variant	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	445.7238464355469	2	445.723652	889.432752	0.084843	3.7816E-05	0.067153	2.9932E-05	0.152	6.7748E-05	445.72374425858015	26.567	0.25978	26.206	26.076	26.335	-0.36164					7	4	2	0	0	0	0.14283	1	9654	9654		85.272	43.177	1	7932600			22179	3385	13936	14015	21322	21322					-0.01638720905395985
NEVKVNGM	8	Unmodified	_NEVKVNGM_					0	0	0		REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;REV1|p.M392*|1|0.28|ENSG00000135945|chr2:99438640-99438640|T/-|frameshift_variant;nc|ENSG00000135945|Q9UBZ9-3|REV1;REV1|p.M392Nfs*12|1|0.38|ENSG00000135945|chr2:99438639-99438640|-/T|frameshift_variant;REV1|p.T177M|1|0.04|ENSG00000135945|chr2:99439284-99439284|G/A|missense_variant	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	445.7237548828125	2	445.723652	889.432752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.407	1	26.258	25.758	26.758	-0.14924								0	0	0	0.68119	1	9472	9472		32.117	7.4431	1				22180	3385	13936	14015	21323	21323					-0.01638720905395985
NEVLGPELP	9	Unmodified	_NEVLGPELP_					0	0	0		ENST00000495061.5_1_12:7174408-7176017:+|nuORF;ENST00000443875.5_1_12:7174318-7177952:+|nuORF;C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant;ENSG00000182326|ENST00000360817|C1S	ENST00000495061.5_1_12:7174408-7176017:+|nuORF	ENST00000495061.5_1_12:7174408-7176017:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	484.25811767578125	2	484.258382	966.502212	0.045527	2.2047E-05	0.21849	0.00010581	0.26402	0.00012785	484.25844986853343	28.818	0.2077	28.477	28.366	28.574	-0.3406					5	3	2	0	0	0	0.16144	1	10399	10399		46.021	0.32134	1	4599900			22181	292	13937	14016	21324	21324					0.017620613149915698
NEVLTKTY	8	Unmodified	_NEVLTKTY_					0	0	0		nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENST00000550917.1_1_12:32879649-32880297:-|nuORF	nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	MULTI-MSMS	HCT116MG_D190212_S3	3	484.25811767578125	2	484.258382	966.502212	0.40816	0.00019765	-0.38985	-0.00018879	0.018307	8.8654E-06	484.2581815298083	28.666	0.4165	28.46	28.177	28.593	-0.20593					13	7	3	0	0	0	0.058486	1	10389	10389		114.2	43.068	1	12515000			22182	5927	13938	14017	21325	21325					0.017620613150029385
NEVLTKTY	8	Unmodified	_NEVLTKTY_					0	0	0		nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENST00000550917.1_1_12:32879649-32880297:-|nuORF	nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	484.258382	966.502212	0.11711	5.6713E-05	0.26208	0.00012691	0.37919	0.00018363	484.25820231746127	28.744	0.25484	28.428	28.249	28.504	-0.31613	-0.027146	0.00031612	NaN	114.2	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18826000			22183	5927	13938	14017							0.017620613150029385
NEVMVHVV	8	Unmodified	_NEVMVHVV_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S2	2	463.74139404296875	2	463.741845	925.469137	-0.035885	-1.6642E-05	-0.62476	-0.00028973	-0.66064	-0.00030637	463.74162749076896	37.872	0.20598	37.779	37.651	37.857	-0.09301					5	3	2	0	0	0	0.53394	1	14240	14240		38.151	15.003	1	15469000			22184	4080	13939	14018	21326	21326					0.003421559913135752
NEVMVHVV	8	Unmodified	_NEVMVHVV_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S3	3	463.74212646484375	2	463.741845	925.469137	0.42044	0.00019498	-0.17699	-8.2078E-05	0.24345	0.0001129	463.7419815413812	38.099	0.19448	37.797	37.691	37.885	-0.30137					6	3	2	0	0	0	0.64404	1	14118	14118		28.487	12.719	1	5057800			22185	4080	13939	14018	21327	21327					0.003421559913135752
NEVPVKEL	8	Unmodified	_NEVPVKEL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	HCT116MG_D190212_S2	2	927.5181884765625	1	927.514573	926.507297	1.352	0.001254	1.7197	0.0015951	3.0717	0.002849	927.5161631696116	33.545	0.20543	33.352	33.225	33.43	-0.19297					6	3	2	0	0	0	0.20346	1	12476	12476		72.968	18.194	1	52566000			22186	2185	13940	14019	21328	21328					0.04110365177609765
NEVPVKEL	8	Unmodified	_NEVPVKEL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-SECPEP	HCT116MG_D190212_S3	3	463.750732421875	2	464.260925	926.507297	0.35101	0.00016296	-0.17541	-8.1437E-05	0.1756	8.1524E-05	464.2607922494247	33.621	0.46679	33.331	33.148	33.615	-0.29013					20	8	4	0	0	0	0.22263	1	12352	12352		36.506	5.8697	1	47302000			22187	2185	13940	14019	21329	21329					0.04110365177609765
NEVPVKEL	8	Unmodified	_NEVPVKEL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	HCT116MG_D190212_S4	4	464.26092529296875	2	464.260925	926.507297	0.18501	8.5891E-05	-0.066626	-3.0932E-05	0.11838	5.4959E-05	464.2607875388567	33.771	0.30215	33.387	33.215	33.517	-0.38426					12	5	3	0	0	0	0.34041	1	12308	12308		55.503	9.4818	1	15435000			22188	2185	13940	14019	21330	21330					0.04110365177609765
NEVQITIPLQG	11	Unmodified	_NEVQITIPLQG_					0	0	0			REV__PLXND1|p.G1254E|1|0.35|ENSG00000004399|chr3:129569947-129569947|C/T|missense_variant	REV__PLXND1|p.G1254E|1|0.35|ENSG00000004399|chr3:129569947-129569947|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	606.333251953125	2	606.335153	1210.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.763	1	40.385	39.885	40.885	-0.37828								0	0	0	0.9387	1	14967	14967		12.241	0	1		+		22189	17427	13941	14020	21331	21331					0.0588505136065578
NEVQLQPV	8	Unmodified	_NEVQLQPV_					0	0	0			REV__ENSG00000095015|ENST00000399503|MAP3K1	REV__ENSG00000095015|ENST00000399503|MAP3K1	MSMS	HCT116MG_D190212_S4	4	463.7508239746094	2	463.750724	925.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.762	1	33.378	32.878	33.878	-0.38426								0	0	0	0.8837	1	12302	12302		12.532	0	1		+		22190	11022	13942	14021	21332	21332					0.02117194517813914
NEVRFSFC	8	Unmodified	_NEVRFSFC_					0	0	0		tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1	tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1	tr|U7STN5|U7STN5_FUSNUAminotransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01128PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	501.2272644042969	2	501.229102	1000.44365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.241	1	18.872	18.372	19.372	-0.3695								0	0	0	0.65264	1	6660	6660		34.402	2.0962	1				22191	18450	13943	14022	21333	21333					-0.05655318531114517
NEVRHIFTA	9	Unmodified	_NEVRHIFTA_					0	0	0		ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	543.7879638671875	2	543.788173	1085.56179	0.6828	0.0003713	-0.55526	-0.00030194	0.12754	6.9354E-05	543.7878513413692	31.869	0.31008	31.62	31.406	31.716	-0.24883					8	5	2	0	0	0	0.11498	1	11808	11808		55.235	19.19	1	11788000			22192	3653	13944	14023	21334	21334					0.022433770490579263
NEVRHIFTA	9	Unmodified	_NEVRHIFTA_					0	0	0		ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	MSMS	HCT116MG_D190212_S3	3	543.788818359375	2	543.788173	1085.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.911	1	31.641	31.141	32.141	-0.27028								0	0	0	0.43211	1	11676	11676		32.037	12.676	1				22193	3653	13944	14023	21335	21335					0.022433770490579263
NEVRHIFTA	9	Unmodified	_NEVRHIFTA_					0	0	0		ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	ENST00000554761.5_1_14:90397883-90418750:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	544.2523803710938	2	543.788173	1085.56179	0.37233	0.00020247	-0.24147	-0.00013131	0.13086	7.1158E-05	543.7881528872649	31.862	0.15609	31.592	31.482	31.638	-0.27028					4	2	2	0	0	0	0.062185	1	11646	11646		67.081	34.295	1	4442100			22194	3653	13944	14023	21336	21336					0.022433770490579263
NEVSDKIY	8	Unmodified	_NEVSDKIY_					0	0	0		ENSG00000175097|ENST00000311485|RAG2;RAG2|p.S111Y|1|0.31|ENSG00000175097|chr11:36593837-36593837|G/T|missense_variant;RAG2|p.K296Ifs*8|1|0.03|ENSG00000175097|chr11:36593282-36593283|-/GTTGAAA|frameshift_variant;RAG2|p.K499Sfs*4|2|0.32|ENSG00000175097|chr11:36592673-36592673|T/-|frameshift_variant;RAG2|p.G509Vfs*6|1|0.18|ENSG00000175097|chr11:36592645-36592645|T/-|frameshift_variant	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MSMS	HCT116MG_D190212_S3	3	484.23992919921875	2	484.24019	966.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.658	1	28.452	27.952	28.952	-0.20593								0	0	0	0.85589	1	10380	10380		18.135	1.1927	1				22195	5363	13945	14024	21337	21337					-0.01874815581720668
NEVSSATF	8	Unmodified	_NEVSSATF_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S2	2	854.3898315429688	1	854.389039	853.381762	0.75842	0.00064799	0.31046	0.00026525	1.0689	0.00091324	854.3890640046275	35.14	0.25888	34.982	34.813	35.072	-0.15834					6	4	2	0	0	0	0.060005	1	13105	13105		112.59	19.771	1	16463000			22196	2498	13946	14025	21338	21338					-0.050793466786103636
NEVSSATF	8	Unmodified	_NEVSSATF_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S3	3	854.389404296875	1	854.389039	853.381762	0.95392	0.00081502	0.25538	0.0002182	1.2093	0.0010332	854.3891202080564	35.301	0.31105	35.002	34.75	35.061	-0.29922					7	5	2	0	0	0	0.052582	1	13034	13034		120.45	23.376	1	7024400			22197	2498	13946	14025	21339	21339					-0.050793466786103636
NEVTDYAIA	9	Unmodified	_NEVTDYAIA_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MSMS	HCT116MG_D190212_S3	3	498.2379150390625	2	498.237647	994.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.622	1	39.321	38.821	39.821	-0.30137								0	0	0	0.0070915	1	14713	14713		111.29	65.266	1				22198	1329	13947	14026	21340	21340					-0.0367111944434555
NEVVQVHAA	9	Unmodified	_NEVVQVHAA_					0	0	0		ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant;ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217	ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant	ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	483.7539978027344	2	483.753798	965.493044	0.44467	0.00021511	-0.26697	-0.00012915	0.17769	8.596E-05	483.7537384457784	26.101	0.25996	25.74	25.61	25.87	-0.36164					7	4	2	0	0	0	0.23138	1	9451	9451		37.974	1.9298	1	40396000			22199	5223	13948	14027	21341	21341					0.008917127493305088
NEVVQVHAA	9	Unmodified	_NEVVQVHAA_					0	0	0		ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant;ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217	ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant	ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	484.24591064453125	2	483.753798	965.493044	0.30643	0.00014824	-0.20722	-0.00010024	0.099212	4.7994E-05	483.75369588231695	25.856	0.26078	25.729	25.598	25.859	-0.12795					11	4	3	0	0	0	0.14889	1	9251	9251		49.933	37.401	1	15420000			22200	5223	13948	14027	21342	21342					0.008917127493305088
NEVVQVHAA	9	Unmodified	_NEVVQVHAA_					0	0	0		ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant;ZNF217|p.F480Sfs*35|1|0.41|ENSG00000171940|chr20:53578378-53578378|A/-|frameshift_variant;ZNF217|p.A693Lfs*10|1|0.48|ENSG00000171940|chr20:53576687-53576687|C/-|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217	ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant	ZNF217|p.T198K|1|0.19|ENSG00000171940|chr20:53582234-53582234|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	484.2458190917969	2	483.753798	965.493044	0.089611	4.335E-05	-0.079658	-3.8535E-05	0.0099529	4.8148E-06	483.7536360049129	26.056	0.26031	25.766	25.672	25.932	-0.29022					6	4	2	0	0	0	0.19936	1	9281	9281		34.402	13.531	1	3301700			22201	5223	13948	14027	21343	21343					0.008917127493305088
NEVVTQQY	8	Unmodified	_NEVVTQQY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MSMS	HCT116MG_D190212_S2	2	490.7380676269531	2	490.737814	979.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.927	1	28.611	28.111	29.111	-0.31613								0	0	0	0.74658	1	10574	10574		26.884	3.7352	1				22202	1369	13949	14028	21344	21344					-0.029476997244614722
NEVVTQQY	8	Unmodified	_NEVVTQQY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MSMS	HCT116MG_D190212_S3	3	490.7378845214844	2	490.737814	979.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.885	1	28.663	28.163	29.163	-0.22195								0	0	0	0.20922	1	10471	10471		66.457	20.436	1				22203	1369	13949	14028	21345	21345					-0.029476997244614722
NEVVTQQY	8	Unmodified	_NEVVTQQY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MSMS	HCT116MG_D190212_S4	4	490.7381286621094	2	490.737814	979.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.01	1	28.669	28.169	29.169	-0.34059								0	0	0	0.44863	1	10457	10457		46.021	22.873	1				22204	1369	13949	14028	21346	21346					-0.029476997244614722
NEVVTREY	8	Unmodified	_NEVVTREY_					0	0	0		ENST00000480540.1_1_14:59261390-59261744:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	505.2513122558594	2	505.251089	1008.48762	0.26895	0.00013589	-1.9263	-0.00097327	-1.6573	-0.00083738	505.2511749332321	25.172	1.0972	25.172	24.882	25.98	0					59	20	4	0	0	0	0.051605	1	9043	9043		121.53	36.262	1	126410000			22205	1249	13950	14029	21347	21347					-0.016280108331329757
NEVVTREY	8	Unmodified	_NEVVTREY_					0	0	0		ENST00000480540.1_1_14:59261390-59261744:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1009.4954223632812	1	1009.4949	1008.48762	0.70768	0.00071439	0.66654	0.00067287	1.3742	0.0013873	1009.4955931288132	25.171	0.2613	25.171	25.04	25.301	0					7	4	2	0	0	0	0.0069275	1	9065	9065		168.54	96.615	1	8942200			22206	1249	13950	14029	21348	21348					-0.016280108331329757
NEVVTREY	8	Unmodified	_NEVVTREY_					0	0	0		ENST00000480540.1_1_14:59261390-59261744:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1009.4947509765625	1	1009.4949	1008.48762	0.50864	0.00051347	0.21513	0.00021718	0.72377	0.00073065	1009.4953781146365	25.582	0.36406	25.213	25.082	25.446	-0.36914					17	6	4	0	0	0	0.0048561	1	9227	9227		181.69	102.96	1	148580000			22207	1249	13950	14029	21349	21349					-0.016280108331329757
NEVVTREY	8	Unmodified	_NEVVTREY_					0	0	0		ENST00000480540.1_1_14:59261390-59261744:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MSMS	HCT116MG_D190212_S2	2	505.25115966796875	2	505.251089	1008.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.583	1	25.213	24.713	25.713	-0.36914								0	0	0	6.2492E-07	1	9219	9219		145.13	59.858	1				22208	1249	13950	14029	21350	21350					-0.016280108331329757
NEVVTREY	8	Unmodified	_NEVVTREY_					0	0	0		ENST00000480540.1_1_14:59261390-59261744:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1009.4960327148438	1	1009.4949	1008.48762	0.70161	0.00070827	-0.80125	-0.00080886	-0.099649	-0.00010059	1009.4946933857818	25.388	0.72871	25.282	25.1	25.829	-0.10618					22	13	3	0	0	0	0.024686	1	9044	9044		209.87	120.97	1	33909000			22209	1249	13950	14029	21351	21351					-0.016280108331329757
NEVVTREY	8	Unmodified	_NEVVTREY_					0	0	0		ENST00000480540.1_1_14:59261390-59261744:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MSMS	HCT116MG_D190212_S3	3	505.2510681152344	2	505.251089	1008.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.296	1	25.19	24.69	25.69	-0.10618								0	0	0	8.9774E-10	1	9024	9024		157.8	49.798	1				22210	1249	13950	14029	21352	21352					-0.016280108331329757
NEVVTREY	8	Unmodified	_NEVVTREY_					0	0	0		ENST00000480540.1_1_14:59261390-59261744:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	505.2513122558594	2	505.251089	1008.48762	0.32131	0.00016234	-2.0436	-0.0010325	-1.7223	-0.0008702	505.2511114632883	25.574	1.0928	25.294	25.058	26.15	-0.27997					60	20	4	0	0	0	0.02964	2	9071	9035;9071		145.13	48.845	1	150640000			22211	1249	13950	14029	21353;21354	21354					-0.016280108331329757
NEVVTREY	8	Unmodified	_NEVVTREY_					0	0	0		ENST00000480540.1_1_14:59261390-59261744:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1009.4961547851562	1	1009.4949	1008.48762	0.71272	0.00071949	-0.14289	-0.00014425	0.56983	0.00057524	1009.4946976459698	25.6	0.2601	25.315	25.156	25.416	-0.28541					10	4	3	0	0	0	0.024686	1	9081	9081		209.87	127.98	1	8172800			22212	1249	13950	14029	21355	21355					-0.016280108331329757
NEWIGKNAS	9	Unmodified	_NEWIGKNAS_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-MSMS	HCT116MG_D190212_S2	2	509.75146484375	2	509.751256	1017.48796	0.32695	0.00016666	0.22913	0.0001168	0.55609	0.00028347	509.7513063064411	20.589	0.15903	20.21	20.13	20.289	-0.37949					4	2	2	0	0	0	0.12205	1	7224	7224		53.833	13.883	1	17974000			22213	1395	13951	14030	21356	21356					-0.020085911132809997
NEYESRSLW	9	Unmodified	_NEYESRSLW_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MULTI-SECPEP	HCT116MG_D190212_S2	2	592.7734985351562	2	592.272552	1182.53055	0.68018	0.00040285	-0.17938	-0.00010624	0.5008	0.00029661	592.7733349063514	42.888	0.2054	42.818	42.689	42.895	-0.069984					8	3	3	0	0	0	0.066778	1	16271	16271		71.708	44.079	1	39412000			22214	2589	13952	14031	21357	21357					-0.053412407757150504
NEYESRSLW	9	Unmodified	_NEYESRSLW_					0	0	0		nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9;nc|ENSG00000117859|Q96SU4-3|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	nc|ENSG00000117859|Q96SU4-7|OSBPL9	MULTI-MSMS	HCT116MG_D190212_S3	3	592.2730712890625	2	592.272552	1182.53055	0.6555	0.00038823	-0.14044	-8.3177E-05	0.51506	0.00030506	592.272462831513	43.234	0.24121	42.93	42.896	43.137	-0.30472					6	5	2	0	0	0	0.0064416	1	16140	16140		125.04	62.465	1	12809000			22215	2589	13952	14031	21358	21358					-0.053412407757150504
NEYFSTKY	8	Unmodified	_NEYFSTKY_					0	0	0		ENSG00000268223|ENST00000686077|ARL14EPL	ENSG00000268223|ENST00000686077|ARL14EPL	ENSG00000268223|ENST00000686077|ARL14EPL	MULTI-MSMS	HCT116MG_D190212_S3	3	526.2406616210938	2	526.24019	1050.46583	0.21238	0.00011176	0.31273	0.00016457	0.52511	0.00027633	526.2402484309961	36.004	0.2597	35.704	35.574	35.834	-0.30042					7	4	2	0	0	0	0.095352	1	13290	13290		96.111	56.154	1	5882200			22216	6652	13953	14032	21359	21359					-0.05738815581707968
NEYFSTKY	8	Unmodified	_NEYFSTKY_					0	0	0		ENSG00000268223|ENST00000686077|ARL14EPL	ENSG00000268223|ENST00000686077|ARL14EPL	ENSG00000268223|ENST00000686077|ARL14EPL	MSMS	HCT116MG_D190212_S4	4	526.2406616210938	2	526.24019	1050.46583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.132	1	35.746	35.246	36.246	-0.38558								0	0	0	0.52116	1	13211	13211		41.956	22.699	1				22217	6652	13953	14032	21360	21360					-0.05738815581707968
NEYGSINHTY	10	Unmodified	_NEYGSINHTY_					0	0	0		nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;FGFR2|p.G338Ifs*18|1|0.49|ENSG00000066468|chr10:121517385-121517391|ATTCCCC/-|frameshift_variant;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-14|FGFR2;nc|ENSG00000077782|P11362-3|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-18|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;nc|ENSG00000077782|P11362-16|FGFR1;nc|ENSG00000066468|P21802-19|FGFR2;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;ENST00000470826.5_1_8:38281789-38325791:-|nuORF;nc|ENSG00000077782|P11362-13|FGFR1;nc|ENSG00000077782|P11362-12|FGFR1;nc|ENSG00000077782|P11362-10|FGFR1;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000066468|P21802-6|FGFR2	nc|ENSG00000066468|P21802-6|FGFR2	MSMS	HCT116MG_D190212_S1	1	599.2626953125	2	599.262185	1196.50982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.635	1	28.635	28.135	29.135	0								0	0	0	0.75242	1	10436	10436		34.932	14.518	1				22218	1173	13954	14033	21361	21361					-0.08057831155360873
NEYGSINHTY	10	Unmodified	_NEYGSINHTY_					0	0	0		nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;FGFR2|p.G338Ifs*18|1|0.49|ENSG00000066468|chr10:121517385-121517391|ATTCCCC/-|frameshift_variant;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-14|FGFR2;nc|ENSG00000077782|P11362-3|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-18|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;nc|ENSG00000077782|P11362-16|FGFR1;nc|ENSG00000066468|P21802-19|FGFR2;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;ENST00000470826.5_1_8:38281789-38325791:-|nuORF;nc|ENSG00000077782|P11362-13|FGFR1;nc|ENSG00000077782|P11362-12|FGFR1;nc|ENSG00000077782|P11362-10|FGFR1;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000066468|P21802-6|FGFR2	nc|ENSG00000066468|P21802-6|FGFR2	MSMS	HCT116MG_D190212_S2	2	599.2619018554688	2	599.262185	1196.50982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.965	1	28.649	28.149	29.149	-0.31613								0	0	0	0.12748	1	10589	10589		76.825	45.556	1				22219	1173	13954	14033	21362	21362					-0.08057831155360873
NEYGSINHTY	10	Unmodified	_NEYGSINHTY_					0	0	0		nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;FGFR2|p.G338Ifs*18|1|0.49|ENSG00000066468|chr10:121517385-121517391|ATTCCCC/-|frameshift_variant;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-14|FGFR2;nc|ENSG00000077782|P11362-3|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-18|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;nc|ENSG00000077782|P11362-16|FGFR1;nc|ENSG00000066468|P21802-19|FGFR2;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;ENST00000470826.5_1_8:38281789-38325791:-|nuORF;nc|ENSG00000077782|P11362-13|FGFR1;nc|ENSG00000077782|P11362-12|FGFR1;nc|ENSG00000077782|P11362-10|FGFR1;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000066468|P21802-6|FGFR2	nc|ENSG00000066468|P21802-6|FGFR2	MULTI-MSMS	HCT116MG_D190212_S3	3	599.2628173828125	2	599.262185	1196.50982	0.71668	0.00042948	0.30732	0.00018416	1.024	0.00061365	599.2624990381584	28.936	0.26049	28.714	28.577	28.838	-0.22195					8	4	3	0	0	0	0.019418	1	10515	10515		121.53	85.028	1	6490300			22220	1173	13954	14033	21363	21363					-0.08057831155360873
NEYGSINHTY	10	Unmodified	_NEYGSINHTY_					0	0	0		nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;FGFR2|p.G338Ifs*18|1|0.49|ENSG00000066468|chr10:121517385-121517391|ATTCCCC/-|frameshift_variant;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-14|FGFR2;nc|ENSG00000077782|P11362-3|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-18|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;nc|ENSG00000077782|P11362-16|FGFR1;nc|ENSG00000066468|P21802-19|FGFR2;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;ENST00000470826.5_1_8:38281789-38325791:-|nuORF;nc|ENSG00000077782|P11362-13|FGFR1;nc|ENSG00000077782|P11362-12|FGFR1;nc|ENSG00000077782|P11362-10|FGFR1;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000066468|P21802-6|FGFR2	nc|ENSG00000066468|P21802-6|FGFR2	MSMS	HCT116MG_D190212_S4	4	599.2625122070312	2	599.262185	1196.50982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.144	1	28.803	28.303	29.303	-0.34059								0	0	0	0.60706	1	10512	10512		42.312	17.322	1				22221	1173	13954	14033	21364	21364					-0.08057831155360873
NEYKGWVL	8	Unmodified	_NEYKGWVL_					0	0	0		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	MULTI-MSMS	HCT116MG_D190212_S2	2	504.76171875	2	504.761092	1007.50763	0.44385	0.00022404	0.046754	2.3599E-05	0.4906	0.00024764	504.76104651104043	51.125	0.31023	50.947	50.81	51.12	-0.17868					12	5	3	0	0	0	0.12671	1	19619	19619		88.954	48.997	1	45895000			22222	4136	13955	14034	21365	21365					0.004177848974904919
NEYKGWVL	8	Unmodified	_NEYKGWVL_					0	0	0		ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	ENSG00000152147|ENST00000281950|GEMIN6	MULTI-MSMS	HCT116MG_D190212_S3	3	504.76141357421875	2	504.761092	1007.50763	0.31176	0.00015736	0.34154	0.0001724	0.6533	0.00032976	504.76116679776464	51.353	0.42003	51.041	50.857	51.277	-0.31166					10	7	2	0	0	0	0.079196	1	19392	19392		99.799	53.778	1	6524000			22223	4136	13955	14034	21366	21366					0.004177848974904919
NEYKSEGTF	9	Unmodified	_NEYKSEGTF_					0	0	0		ENSG00000088888|ENST00000428216|MAVS;nc|ENSG00000088888|Q7Z434-4|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2421264648438	2	537.740554	1073.46655	0.57056	0.00030681	-0.38188	-0.00020535	0.18868	0.00010146	538.2418490887202	27.807	0.25989	27.619	27.465	27.725	-0.18847					7	4	2	0	0	0	0.1935	1	10064	10064		41.956	12.874	1	2732300			22224	1503	13956	14035	21367	21367					-0.06724020932665553
NEYLNPEL	8	Unmodified	_NEYLNPEL_					0	0	0		ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	ENSG00000105011|ENST00000263382|ASF1B	MULTI-MSMS	HCT116MG_D190212_S2	2	991.4737548828125	1	991.473103	990.465826	0.77389	0.00076729	0.15123	0.00014994	0.92512	0.00091723	991.4729962071343	45.939	0.30829	45.837	45.658	45.966	-0.1014					12	5	3	0	0	0	0.036435	1	17487	17487		139.14	53.866	1	63511000			22225	1976	13957	14036	21368	21368					-0.029788155817072948
NEYPSRVA	8	Unmodified	_NEYPSRVA_					0	0	0		nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	nc|ENSG00000106636|O15498-2|YKT6	nc|ENSG00000106636|O15498-2|YKT6	MSMS	HCT116MG_D190212_S2	2	468.23297119140625	2	468.232699	934.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.211	1	22.826	22.326	23.326	-0.3852								0	0	0	0.67283	1	8261	8261		32.786	0.4802	1				22226	2090	13958	14037	21369	21369					-0.01900262659046348
NEYPSRVAF	9	Unmodified	_NEYPSRVAF_					0	0	0		nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	nc|ENSG00000106636|O15498-2|YKT6	nc|ENSG00000106636|O15498-2|YKT6	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7674560546875	2	541.766906	1081.51926	0.41291	0.0002237	0.0094229	5.105E-06	0.42233	0.0002288	541.7669029428753	38.602	0.26853	38.518	38.382	38.65	-0.084618					12	4	3	0	0	0	0.0038512	1	14507	14507		152.89	81.752	1	72468000			22227	2090	13959	14038	21370	21370					-0.018240180791963212
NEYPSRVAF	9	Unmodified	_NEYPSRVAF_					0	0	0		nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	nc|ENSG00000106636|O15498-2|YKT6	nc|ENSG00000106636|O15498-2|YKT6	MULTI-MSMS	HCT116MG_D190212_S3	3	541.76806640625	2	541.766906	1081.51926	0.36416	0.00019729	0.14269	7.7305E-05	0.50685	0.00027459	541.766924189741	38.843	0.36391	38.542	38.352	38.716	-0.30137					19	6	4	0	0	0	0.0034865	1	14404	14404		165.72	98.376	1	31742000			22228	2090	13959	14038	21371	21371					-0.018240180791963212
NEYPSRVAF	9	Unmodified	_NEYPSRVAF_					0	0	0		nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	nc|ENSG00000106636|O15498-2|YKT6	nc|ENSG00000106636|O15498-2|YKT6	MULTI-MSMS	HCT116MG_D190212_S4	4	541.7669067382812	2	541.766906	1081.51926	0.4212	0.00022819	-0.55247	-0.00029931	-0.13127	-7.1116E-05	541.7663516715472	38.983	0.43579	38.602	38.337	38.772	-0.38086					15	8	3	0	0	0	0.019537	1	14336	14336		96.936	35.578	1	8946800			22229	2090	13959	14038	21372	21372					-0.018240180791963212
NEYRVPEL	8	Unmodified	_NEYRVPEL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	HCT116MG_D190212_S2	2	510.2613830566406	2	510.261456	1018.50836	0.53448	0.00027272	-0.43124	-0.00022005	0.10324	5.2678E-05	510.26114041502467	42.55	0.41638	42.48	42.221	42.637	-0.069984					14	7	3	0	0	0	0.094232	1	16157	16157		96.367	29.91	1	15195000			22230	2471	13960	14039	21373	21373					-0.00015420453462411388
NEYRVPEL	8	Unmodified	_NEYRVPEL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	HCT116MG_D190212_S3	3	510.261962890625	2	510.261456	1018.50836	0.24309	0.00012404	0.19836	0.00010122	0.44146	0.00022526	510.26156397892487	42.838	0.36427	42.534	42.247	42.612	-0.30472					10	6	2	0	0	0	0.058486	1	15987	15987		114.2	43.068	1	6389200			22231	2471	13960	14039	21374	21374					-0.00015420453462411388
NEYSNIEEF	9	Unmodified	_NEYSNIEEF_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL;nc|ENSG00000152795|O14979-3|HNRNPDL;HNRNPDL|p.L290Ifs*15|1|0.1|ENSG00000152795|chr4:82427471-82427472|-/T|frameshift_variant;HNRNPDL|p.F253Lfs*35|1|0.22|ENSG00000152795|chr4:82428033-82428033|A/-|frameshift_variant;HNRNPDL|p.K289Nfs*3|1|0.34|ENSG00000152795|chr4:82427472-82427472|T/-|frameshift_variant	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MSMS	HCT116MG_D190212_S2	2	572.7427978515625	2	572.743293	1143.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.65	1	45.549	45.049	46.049	-0.1014								0	0	0	0.017042	1	17366	17366		96.111	65.474	1				22232	4162	13961	14040	21375	21375					-0.09396342140848901
NEYSNIEEF	9	Unmodified	_NEYSNIEEF_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL;nc|ENSG00000152795|O14979-3|HNRNPDL;HNRNPDL|p.L290Ifs*15|1|0.1|ENSG00000152795|chr4:82427471-82427472|-/T|frameshift_variant;HNRNPDL|p.F253Lfs*35|1|0.22|ENSG00000152795|chr4:82428033-82428033|A/-|frameshift_variant;HNRNPDL|p.K289Nfs*3|1|0.34|ENSG00000152795|chr4:82427472-82427472|T/-|frameshift_variant	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MULTI-MSMS	HCT116MG_D190212_S3	3	572.7437744140625	2	572.743293	1143.47203	0.60234	0.00034498	0.038038	2.1786E-05	0.64037	0.00036677	572.7431949891657	45.797	0.25946	45.486	45.357	45.616	-0.31094					7	4	2	0	0	0	0.0045841	1	17172	17172		142.08	98.221	1	7541600			22233	4162	13961	14040	21376	21376					-0.09396342140848901
NEYTKFIPP	9	Unmodified	_NEYTKFIPP_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MSMS	HCT116MG_D190212_S1	1	554.7786254882812	2	554.787307	1107.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.713	1	41.713	41.213	42.213	0								0	0	0	0.072313	1	15714	15714		63.961	27.833	1				22234	4737	13962	14041	21377	21377					0.010583232404542287
NEYTKFIPP	9	Unmodified	_NEYTKFIPP_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-MSMS	HCT116MG_D190212_S2	2	554.7874145507812	2	554.787307	1107.56006	0.39407	0.00021862	0.51588	0.0002862	0.90995	0.00050483	554.7874647809858	41.872	1.6036	41.804	41.191	42.795	-0.068199					53	30	3	0	0	0	0.023778	3	15960	15696;15960;15982		92.653	50.559	1	25457000			22235	4737	13962	14041	21378;21379;21380	21379					0.010583232404542287
NEYTKFIPP	9	Unmodified	_NEYTKFIPP_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-MSMS	HCT116MG_D190212_S3	3	554.78759765625	2	554.787307	1107.56006	0.45376	0.00025174	0.065042	3.6084E-05	0.51881	0.00028783	554.7874033215645	42.109	0.93728	41.806	41.625	42.562	-0.30257					31	17	2	0	0	0	0.071914	1	15684	15684		63.961	42.214	1	4569100			22236	4737	13962	14041	21381	21381					0.010583232404542287
NEYTKFIPP	9	Unmodified	_NEYTKFIPP_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	554.787307	1107.56006	0.30904	0.00017145	0.30041	0.00016666	0.60944	0.00033811	555.2890814061093	42.186	0.46858	42.186	41.914	42.383	0	0.25371	-3.3795E-05	NaN	92.653	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8039500			22237	4737	13962	14041							0.010583232404542287
NFDPARFLD	9	Unmodified	_NFDPARFLD_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	HCT116MG_D190212_S4	4	547.767333984375	2	547.766906	1093.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.761	1	57.467	56.967	57.967	-0.29465								0	0	0	0.76739	1	21690	21690		10.074	2.1638	1				22238	3525	13963	14042	21382	21382					-0.023760180791896346
NFERKRFIPEQ	11	Unmodified	_NFERKRFIPEQ_					0	0	0			REV__ENSG00000161180|ENST00000292779|CCDC116	REV__ENSG00000161180|ENST00000292779|CCDC116	MSMS	HCT116MG_D190212_S1	1	732.3917846679688	2	732.391325	1462.7681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.816	1	19.816	19.316	20.316	0								0	0	0	0.93456	1	6893	6893		14.405	2.9107	1		+		22239	12852	13964	14043	21383	21383					0.05522325157517116
NFFKLRLFCC	10	Unmodified	_NFFKLRLFCC_					0	0	0		NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant;ENSG00000144815|ENST00000273347|NXPE3	NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.887939453125	3	430.887711	1289.6413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.1557	1	5.1782	4.6782	5.6782	0.022513								0	0	0	0.97045	1	1553	1553		0.15932	0	1				22240	3886	13965	14044	21384	21384					0.008069844071769694
NFFKLRLFCC	10	Unmodified	_NFFKLRLFCC_					0	0	0		NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant;ENSG00000144815|ENST00000273347|NXPE3	NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	430.887939453125	3	430.887711	1289.6413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2469	1	4.9827	4.4827	5.4827	-0.26414								0	0	0	0.97045	1	1604	1604		0.15932	0	1				22241	3886	13965	14044	21385	21385					0.008069844071769694
NFFKLRLFCC	10	Unmodified	_NFFKLRLFCC_					0	0	0		NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant;ENSG00000144815|ENST00000273347|NXPE3	NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	NXPE3|p.R510Sfs*31|1|0.11|ENSG00000144815|chr3:101821799-101821800|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	430.88824462890625	3	430.887711	1289.6413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7132	1	9.5035	9.0035	10.003	-0.20971								0	0	0	0.97045	1	2976	2976		0.15932	0	1				22242	3886	13965	14044	21386	21386					0.008069844071769694
NFGDTEEAKK	10	Unmodified	_NFGDTEEAKK_					0	0	0		nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1;nc|ENSG00000197249|P01009-3|SERPINA1	nc|ENSG00000197249|P01009-2|SERPINA1	nc|ENSG00000197249|P01009-2|SERPINA1	MSMS	HCT116MG_D190212_S4	4	569.7716674804688	2	569.772385	1137.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.627	1	40.248	39.748	40.748	-0.37828								0	0	0	0.050408	1	14912	14912		100.71	52.977	1				22243	6130	13966	14045	21387	21387					-0.03304660495587086
NFHPQLEQF	9	Unmodified	_NFHPQLEQF_					0	0	0			REV__nc|ENSG00000283632|Q2M3D2|EXOC3L2	REV__nc|ENSG00000283632|Q2M3D2|EXOC3L2	MSMS	HCT116MG_D190212_S2	2	387.1903381347656	3	387.189212	1158.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.627	1	28.297	27.797	28.797	-0.32987								0	0	0	0.76592	1	10450	10450		15.248	3.6171	1		+		22244	14477	13967	14046	21388	21388					-0.027123291878751843
NFLDYLRTL	9	Unmodified	_NFLDYLRTL_					0	0	0		ENST00000508198.5_1_4:152330433-152375872:+|nuORF	ENST00000508198.5_1_4:152330433-152375872:+|nuORF	ENST00000508198.5_1_4:152330433-152375872:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	577.81396484375	2	577.813856	1153.61316	0.5123	0.00029601	-0.0044111	-2.5488E-06	0.50788	0.00029346	577.8136271522019	56.158	0.20514	55.975	55.847	56.052	-0.18261					5	3	2	0	0	0	0.32978	1	21691	21691		27.629	7.1752	1	24155000			22245	8474	13968	14047	21389	21389					0.04249701023104535
NFLKQEVVQR	10	Unmodified	_NFLKQEVVQR_					0	0	0		TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant;TRANK1|p.P972Qfs*12|1|0.34|ENSG00000168016|chr3:36856675-36856675|G/-|frameshift_variant;TRANK1|p.F2073Lfs*13|1|0.1|ENSG00000168016|chr3:36833232-36833232|A/-|frameshift_variant;nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant	TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	630.8560180664062	2	630.856586	1259.69862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.688	1	42.314	41.814	42.814	-0.37493								0	0	0	0.94551	1	15699	15699		5.7319	0	1				22246	18660	13969	14048	21390	21390					0.07915866208736588
NFLLLPLPL	9	Unmodified	_NFLLLPLPL_					0	0	0			REV__ENST00000593532.5_1_19:50885885-50886227:+|nuORF	REV__ENST00000593532.5_1_19:50885885-50886227:+|nuORF	MSMS	HCT116MG_D190212_S2	2	520.3320922851562	2	520.331153	1038.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.661	1	47.528	47.028	48.028	-0.13281								0	0	0	0.76967	1	18186	18186		2.0598	0	1		+		22247	16707	13970	14049	21391	21391					0.12997568901846535
NFSMEDHNRAE	11	Unmodified	_NFSMEDHNRAE_					0	0	0			REV__ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant	REV__ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	674.9247436523438	2	675.280583	1348.54661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.468	1	62.468	61.968	62.968	0								0	0	0	0.95731	1	24122	24122		2.4985	1.0166	1		+		22248	14122	13971	14050	21392	21392					-0.11371902601104011
NFSRILTIYP	10	Unmodified	_NFSRILTIYP_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	612.34375	2	612.342781	1222.67101	0.39209	0.00024009	0.70638	0.00043254	1.0985	0.00067264	612.3441883954486	61.802	1.7619	61.802	60.952	62.714	0					102	33	4	0	0	0	0.88823	1	24010	24010		1.4819	0	1	11618000			22249	5305	13972	14051	21393	21393					0.06857962948538443
NFSYGTDEY	9	Unmodified	_NFSYGTDEY_					0	0	0		ABR|p.L352Wfs*29|2|0.56|ENSG00000159842|chr17:1067205-1067205|G/-|frameshift_variant;ENSG00000159842|ENST00000302538|ABR	ABR|p.L352Wfs*29|2|0.56|ENSG00000159842|chr17:1067205-1067205|G/-|frameshift_variant	ABR|p.L352Wfs*29|2|0.56|ENSG00000159842|chr17:1067205-1067205|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	548.2158203125	2	548.216911	1094.41927	0.53316	0.00029229	-2.0693	-0.0011344	-1.5361	-0.00084214	548.2154587323997	45.688	0.208	45.377	45.253	45.461	-0.31094					5	3	2	0	0	0	0.66792	1	17133	17133		7.2892	1.0834	1	2952100			22250	17	13973	14052	21394	21394					-0.12416300203653918
NFTRILEY	8	Unmodified	_NFTRILEY_					0	0	0		ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant;ITGA5|p.L399Wfs*26|2|0.4|ENSG00000161638|chr12:54405196-54405196|G/-|frameshift_variant;ENSG00000161638|ENST00000293379|ITGA5	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	528.2798461914062	2	528.279649	1054.54475	0.72356	0.00038224	-0.29857	-0.00015773	0.425	0.00022452	528.2793238664893	47.639	0.31048	47.506	47.377	47.687	-0.13281					9	5	3	0	0	0	0.037913	1	18187	18187		137.42	82.65	1	32896000			22251	4489	13974	14053	21395	21395					0.0196545644323578
NGARRTGG	8	Unmodified	_NGARRTGG_					0	0	0			REV__ENSG00000112559|ENST00000230321|MDFI	REV__ENSG00000112559|ENST00000230321|MDFI	MSMS	HCT116MG_D190212_S2	2	394.710693359375	2	394.709725	787.404898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.539	1	30.254	29.754	30.754	-0.28453								0	0	0	0.74658	1	11232	11232		26.884	7.4447	1		+		22252	11463	13975	14054	21396	21396					0.002691369493845741
NGDLIIWT	8	Unmodified	_NGDLIIWT_					0	0	0			REV__ENST00000462077.1_1_20:14309703-14309754:-|nuORF	REV__ENST00000462077.1_1_20:14309703-14309754:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	466.2496032714844	2	466.247818	930.481082	0.11485	5.3547E-05	1.733	0.00080799	1.8478	0.00086153	466.2497014545619	61.632	1.9156	61.632	61.004	62.92	0					126	36	4	0	0	0	0.87685	1	23923	23923		0.6015	0	1	11704000	+		22253	15793	13976	14055	21397	21397					0.013060960061352489
NGGDGPGRS	9	Unmodified	_NGGDGPGRS_					0	0	0			REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	816.3600463867188	1	816.35947	815.352193	1.1357	0.00092714	-0.097553	-7.9638E-05	1.0381	0.0008475	816.3593507129996	45.797	0.36334	45.486	45.305	45.668	-0.31094					14	6	3	0	0	0	0.67781	1	17162	17162		6.7232	1.4925	1	22207000	+		22254	10681	13977	14056	21398	21398					-0.06286865904087335
NGGDGPGRS	9	Unmodified	_NGGDGPGRS_					0	0	0			REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	816.35947	815.352193	0.91916	0.00075037	0.91506	0.00074702	1.8342	0.0014974	816.3602759181724	45.515	0.20886	45.515	45.399	45.607	0	0.036046	0.0008225	NaN	6.7232	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10678000	+		22255	10681	13977	14056							-0.06286865904087335
NGGDGPGRS	9	Unmodified	_NGGDGPGRS_					0	0	0			REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	816.35947	815.352193	0.83157	0.00067886	-0.25087	-0.0002048	0.5807	0.00047406	816.3592318590012	45.529	0.61604	45.436	45.256	45.872	-0.092472	-0.043128	-0.00012931	NaN	6.7232	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257630000	+		22256	10681	13977	14056							-0.06286865904087335
NGGDGPGRS	9	Unmodified	_NGGDGPGRS_					0	0	0			REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	816.35947	815.352193	1.1357	0.00092714	-0.097553	-7.9638E-05	1.0381	0.0008475	816.3593507129996	45.797	0.36334	45.486	45.305	45.668	-0.31094	0.0070821	-4.1504E-06	NaN	6.7232	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22207000	+		22257	10681	13977	14056							-0.06286865904087335
NGGPGAVGPA	10	Unmodified	_NGGPGAVGPA_					0	0	0			REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	796.3949584960938	1	796.394793	795.387516	0.6517	0.00051901	0.5367	0.00042742	1.1884	0.00094643	796.3951377327935	22.796	0.3003	22.777	22.595	22.896	-0.018869					7	5	2	0	0	0	0.28012	1	8022	8022		52.268	6.2474	1	4943800	+		22258	12332	13978	14057	21399	21399					-0.01836203376285539
NGGPGAVGPA	10	Unmodified	_NGGPGAVGPA_					0	0	0			REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	796.3955078125	1	796.394793	795.387516	0.745	0.00059331	0.13983	0.00011136	0.88482	0.00070467	796.3951003105815	22.982	0.31293	22.744	22.55	22.863	-0.23758					8	5	2	0	0	0	0.2521	1	8024	8024		54.774	16.8	1	3524900	+		22259	12332	13978	14057	21400	21400					-0.01836203376285539
NGGPGAVGPA	10	Unmodified	_NGGPGAVGPA_					0	0	0			REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	796.394793	795.387516	0.745	0.00059331	0.13983	0.00011136	0.88482	0.00070467	796.3951003105815	22.982	0.31293	22.744	22.55	22.863	-0.23758	-0.016359	-0.00016682	NaN	54.774	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3524900	+		22260	12332	13978	14057							-0.01836203376285539
NGIESHIR	8	Unmodified	_NGIESHIR_					0	0	0			REV__CON__Q6IME9	REV__CON__Q6IME9	MULTI-MSMS	HCT116MG_D190212_S4	4	463.2464294433594	2	463.246141	924.477728	-0.1457	-6.7497E-05	0.29472	0.00013653	0.14902	6.9031E-05	463.2462321028587	18.012	0.26003	17.837	17.688	17.948	-0.17501					7	4	2	0	0	0	0.83066	1	6021	6021		7.9102	0	1	3173300	+	+	22261	10271	13979	14058	21401	21401					0.012468459521301156
NGINIIVV	8	Unmodified	_NGINIIVV_					0	0	0		ENST00000450119.1_1_10:92813377-92813905:+|nuORF	ENST00000450119.1_1_10:92813377-92813905:+|nuORF	ENST00000450119.1_1_10:92813377-92813905:+|nuORF	MSMS	HCT116MG_D190212_S4	4	421.2593688964844	2	421.260728	840.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.785	1	48.42	47.92	48.92	-0.365								0	0	0	0.8837	1	18075	18075		2.8892	0	1				22262	7978	13980	14059	21402	21402					0.08026990248424681
NGIREKKRDNE	11	Unmodified	_NGIREKKRDNE_					0	0	0			REV__tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1	REV__tr|U7T668|U7T668_FUSNUHTHcro/C1-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00128PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	679.8604736328125	2	679.860389	1357.70622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.233	1	11.233	10.733	11.733	0								0	0	0	0.96141	1	3517	3517		0.35063	0	1		+		22263	17994	13981	14060	21403	21403					0.04167973738412911
NGKEQYVPPR	10	Unmodified	_NGKEQYVPPR_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MSMS	HCT116MG_D190212_S1	1	594.312744140625	2	594.312012	1186.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.254	1	57.254	56.754	57.754	0								0	0	0	0.91638	1	22028	22028		12.241	1.4167	1				22264	4497	13982	14061	21404	21404					0.023630312492059602
NGKGAPRR	8	Unmodified	_NGKGAPRR_					0	0	0		ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	MULTI-MSMS	HCT116MG_D190212_S1	1	428.24945068359375	2	428.249018	854.483482	-0.0051586	-2.2092E-06	0.82634	0.00035388	0.82119	0.00035167	428.24930311905223	47.415	1.0509	47.415	46.595	47.646	0					36	20	2	0	0	0	0.87635	1	17849	17849		0.69038	0	1	189790000			22265	1234	13983	14062	21405	21405					0.05041989254470991
NGKGAPRR	8	Unmodified	_NGKGAPRR_					0	0	0		ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	MULTI-MSMS	HCT116MG_D190212_S3	3	428.2489013671875	2	428.249018	854.483482	0.23753	0.00010172	0.031834	1.3633E-05	0.26936	0.00011535	428.24890742058653	48.353	0.98886	48.037	47.359	48.348	-0.31596					21	18	2	0	0	0	0.87635	1	18293	18293		0.69038	0	1	5055300			22266	1234	13983	14062	21406	21406					0.05041989254470991
NGKGAPRR	8	Unmodified	_NGKGAPRR_					0	0	0		ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	MSMS	HCT116MG_D190212_S3	3	428.2492370605469	2	428.249018	854.483482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.193	1	38.891	38.391	39.391	-0.30137								0	0	0	0.8837	1	14544	14544		0.69038	0	1				22267	1234	13983	14062	21407	21407					0.05041989254470991
NGLDGQPGPQ	10	Unmodified	_NGLDGQPGPQ_					0	0	0		ENST00000561194.1_1_15:51669621-51676112:+|nuORF;ENST00000464150.2_1_15:51669612-51676112:+|nuORF;nc|ENSG00000186417|Q6ZMI3-2|GLDN;ENSG00000186417|ENST00000335449|GLDN	ENST00000561194.1_1_15:51669621-51676112:+|nuORF	ENST00000561194.1_1_15:51669621-51676112:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	491.733154296875	2	491.733063	981.451573	-0.24018	-0.0001181	0.50311	0.0002474	0.26293	0.00012929	491.7332517807925	17.317	0.25862	17.147	17.018	17.277	-0.17047					6	4	2	0	0	0	0.67188	1	5763	5763		22.736	1.1993	1	957500			22268	5883	13984	14063	21408	21408					-0.0398946800999056
NGLGNVGIYS	10	Unmodified	_NGLGNVGIYS_					0	0	0		tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	497.2537841796875	2	497.253631	992.49271	0.43813	0.00021786	-0.38385	-0.00019087	0.054275	2.6988E-05	497.25323197028183	29.356	0.2597	29.007	28.877	29.137	-0.34921					6	4	2	0	0	0	0.33066	1	10607	10607		47.749	13.646	1	2629600			22269	18408	13985	14064	21409	21409					-0.0038370697051277602
NGMAGKPV	8	Unmodified	_NGMAGKPV_					0	0	0			REV__nc|ENSG00000074047|P10070-2|GLI2	REV__nc|ENSG00000074047|P10070-2|GLI2	MSMS	HCT116MG_D190212_S4	4	387.20147705078125	2	387.202356	772.390159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.773	1	57.478	56.978	57.978	-0.29465								0	0	0	0.8837	1	21695	21695		0.79363	0	1		+		22270	10795	13986	14065	21410	21410					-0.0051407124298066265
NGMCHGAK	8	Unmodified	_NGMCHGAK_					0	0	0			REV__ENST00000467530.5_1_1:85960653-85960731:-|nuORF	REV__ENST00000467530.5_1_1:85960653-85960731:-|nuORF	MSMS	HCT116MG_D190212_S4	4	409.17462158203125	2	409.175815	816.337077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.52	1	38.138	37.638	38.638	-0.38163								0	0	0	0.8837	1	14120	14120		5.2307	2.6532	1		+		22271	15835	13987	14066	21411	21411					-0.07843772297292162
NGNGGNQD	8	Unmodified	_NGNGGNQD_					0	0	0		ENST00000508536.1_1_4:122776593-122780164:-|nuORF	ENST00000508536.1_1_4:122776593-122780164:-|nuORF	ENST00000508536.1_1_4:122776593-122780164:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	775.2977905273438	1	775.296535	774.289259	1.0414	0.00080743	0.35115	0.00027224	1.3926	0.0010797	775.2968786685094	56.004	0.15303	55.818	55.742	55.895	-0.18565					4	2	2	0	0	0	0.86858	1	21631	21631		2.0598	1.4583	1	13180000			22272	8478	13988	14067	21412	21412					-0.10691431692134756
NGNSLDPSSLH	11	Unmodified	_NGNSLDPSSLH_					0	0	0		CPNE2|p.P321S|1|0.26|ENSG00000140848|chr16:57125893-57125893|C/T|missense_variant	CPNE2|p.P321S|1|0.26|ENSG00000140848|chr16:57125893-57125893|C/T|missense_variant	CPNE2|p.P321S|1|0.26|ENSG00000140848|chr16:57125893-57125893|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1140.52880859375	1	1140.52799	1139.52072	0.47451	0.0005412	-0.29876	-0.00034074	0.17575	0.00020045	1140.527972799397	15.737	0.31329	15.402	15.271	15.585	-0.33451					8	5	2	0	0	0	0.74191	1	5286	5286		4.897	1.3005	1	1869500			22273	592	13989	14068	21413	21413					-0.04346428781082068
NGNSLDPSSLH	11	Unmodified	_NGNSLDPSSLH_					0	0	0		CPNE2|p.P321S|1|0.26|ENSG00000140848|chr16:57125893-57125893|C/T|missense_variant	CPNE2|p.P321S|1|0.26|ENSG00000140848|chr16:57125893-57125893|C/T|missense_variant	CPNE2|p.P321S|1|0.26|ENSG00000140848|chr16:57125893-57125893|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1140.52799	1139.52072	0.62332	0.00071091	-0.098759	-0.00011264	0.52456	0.00059827	1140.5279791177513	15.614	0.26019	15.614	15.536	15.796	0	-0.024502	-0.00013214	NaN	4.897	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2619600			22274	592	13989	14068							-0.04346428781082068
NGPVSSGTGAP	11	Unmodified	_NGPVSSGTGAP_					0	0	0		ENSG00000169258|ENST00000303991|GPRIN1;GPRIN1|p.T702Rfs*12|1|0.44|ENSG00000169258|chr5:176597731-176597731|T/-|frameshift_variant;nc|ENSG00000169258|Q7Z2K8-2|GPRIN1;GPRIN1|p.K629Efs*117|1|0.67|ENSG00000169258|chr5:176597950-176597951|-/C|frameshift_variant	ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	MSMS	HCT116MG_D190212_S1	1	472.2270812988281	2	472.227613	942.440674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.123	1	20.123	19.623	20.623	0								0	0	0	0.93552	1	7016	7016		13.906	2.2658	1				22275	5063	13990	14069	21414	21414					-0.03284870384266014
NGRQCVAEGSP	11	Unmodified	_NGRQCVAEGSP_					0	0	0		nc|ENSG00000116962|P14543-2|NID1;ENSG00000116962|ENST00000264187|NID1	nc|ENSG00000116962|P14543-2|NID1	nc|ENSG00000116962|P14543-2|NID1	MSMS	HCT116MG_D190212_S3	3	559.2587280273438	2	559.256379	1116.49821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.3	1	23.261	22.761	23.761	-0.03968								0	0	0	0.8787	1	8220	8220		22.736	3.4793	1				22276	2549	13991	14070	21415	21415					-0.05538351450331902
NGRSKTLPK	9	Unmodified	_NGRSKTLPK_					0	0	0			REV__ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant	REV__ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2571716308594	2	500.79854	999.582528	0.42578	0.00021323	0.15621	7.8229E-05	0.58198	0.00029146	500.7985209769842	51.011	1.3986	50.833	50.184	51.583	-0.17868					72	26	4	0	0	0	0.71345	1	19562	19562		4.3292	0	1	264860000	+		22277	12530	13992	14071	21416	21416					0.08271967428720473
NGSAHSSG	8	Unmodified	_NGSAHSSG_					0	0	0		nc|ENSG00000138031|O60266-2|ADCY3;ENSG00000138031|ENST00000679454|ADCY3	nc|ENSG00000138031|O60266-2|ADCY3	nc|ENSG00000138031|O60266-2|ADCY3	MULTI-MSMS	HCT116MG_D190212_S1	1	716.2953491210938	1	716.295807	715.28853	0.88922	0.00063695	-0.27495	-0.00019694	0.61428	0.00044	716.2954015526593	35.863	0.4683	35.863	35.682	36.15	0					11	8	2	0	0	0	0.87635	1	13388	13388		0.69038	0.088878	1	6258100			22278	3524	13993	14072	21417	21417					-0.08050226341174493
NGSSLYITAV	10	Unmodified	_NGSSLYITAV_					0	0	0		nc|ENSG00000211781|A0A075B6U4|TRAV7	nc|ENSG00000211781|A0A075B6U4|TRAV7	nc|ENSG00000211781|A0A075B6U4|TRAV7	MULTI-MSMS	HCT116MG_D190212_S1	1	512.76904296875	2	512.769114	1023.52368	0.35595	0.00018252	1.2081	0.00061947	1.564	0.00080199	512.7690788274119	27.047	0.5206	27.047	26.813	27.334	0					15	9	3	0	0	0	0.53455	1	9817	9817		32.786	1.5173	1	12811000			22279	9625	13994	14073	21418	21418					0.01285446343717922
NGSTLWERP	9	Unmodified	_NGSTLWERP_					0	0	0		nc|ENSG00000167930|Q9H0X4-2|FAM234A;ENSG00000167930|ENST00000399932|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2932739257812	2	530.26453	1058.51451	0.43194	0.00022904	1.3393	0.00071021	1.7713	0.00093925	530.2655547010227	19.597	0.5194	19.222	18.987	19.506	-0.37503					23	9	4	0	0	0	0.55223	1	6737	6737		13.906	2.2658	1	35971000			22280	4963	13995	14074	21419	21419					-0.012409022219571852
NGTHRLVV	8	Unmodified	_NGTHRLVV_					0	0	0			REV__ENST00000567420.1_1_16:15141297-15141917:-|nuORF	REV__ENST00000567420.1_1_16:15141297-15141917:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	448.25909423828125	2	448.259051	894.503549	-0.11618	-5.2078E-05	0.75276	0.00033743	0.63658	0.00028535	448.25927915897665	48.383	0.66914	48.383	48.048	48.717	0					34	12	4	0	0	0	0.87576	1	18360	18360		0.79363	0	1	1975099999.9999998	+		22281	12740	13996	14075	21420	21420					0.05207740194430244
NGTYGLKTY	9	Unmodified	_NGTYGLKTY_					0	0	0			REV__ACTR3B|p.A22T|1|0.21|ENSG00000133627|chr7:152783206-152783206|G/A|missense_variant	REV__ACTR3B|p.A22T|1|0.21|ENSG00000133627|chr7:152783206-152783206|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	508.5937805175781	2	508.756007	1015.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.368	1	51.056	50.556	51.556	-0.31166								0	0	0	0.76902	1	19393	19393		4.3292	0.38484	1		+		22282	9841	13997	14076	21421	21421					-0.009668228277632807
NGVIDPRR	8	Unmodified	_NGVIDPRR_					0	0	0		ENST00000452733.6_1_19:48983947-48984328:+|nuORF	ENST00000452733.6_1_19:48983947-48984328:+|nuORF	ENST00000452733.6_1_19:48983947-48984328:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	463.7618713378906	2	463.761958	925.509363	0.082292	3.8164E-05	-0.13549	-6.2836E-05	-0.053199	-2.4672E-05	463.76185826636635	49.621	0.25837	49.621	49.492	49.75	0					9	4	3	0	0	0	0.8506	1	18918	18918		5.2307	0.90143	1	40623000			22283	7998	13998	14077	21422	21422					0.043628387060948626
NGVVSVLF	8	Unmodified	_NGVVSVLF_					0	0	0			REV__ENST00000440282.5_1_10:13485344-13485509:-|nuORF	REV__ENST00000440282.5_1_10:13485344-13485509:-|nuORF	MSMS	HCT116MG_D190212_S4	4	417.7413330078125	2	417.739628	833.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.576	1	48.209	47.709	48.709	-0.36728								0	0	0	0.8837	1	17995	17995		2.8892	0	1		+		22284	15641	13999	14078	21423	21423					0.04131014840061198
NGYSSGPR	8	Unmodified	_NGYSSGPR_					0	0	0			REV__ENSG00000172404|ENST00000307221|DNAJB7	REV__ENSG00000172404|ENST00000307221|DNAJB7	MULTI-MSMS	HCT116MG_D190212_S4	4	837.385986328125	1	837.384956	836.37768	0.61961	0.00051886	0.18809	0.0001575	0.8077	0.00067636	837.3852379712309	18.302	0.30941	18.121	17.942	18.251	-0.18052					8	5	2	0	0	0	0.58007	1	6138	6138		34.102	0	1	2281100	+		22285	13388	14000	14079	21424	21424					-0.04705391381651225
NHCCSCTN	8	Unmodified	_NHCCSCTN_					0	0	0			REV__tr|U7SLZ6|U7SLZ6_FUSNUCompetenceproteinComFCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01997PE=4SV=1	REV__tr|U7SLZ6|U7SLZ6_FUSNUCompetenceproteinComFCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01997PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	441.3058776855469	2	441.138572	880.262592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.521	1	57.521	57.021	58.021	0								0	0	0	0.8837	1	22136	22136		0.69038	0	1		+		22286	17715	14001	14080	21425	21425					-0.18232903170985537
NHFAHIFAP	9	Unmodified	_NHFAHIFAP_					0	0	0		ITIH1|p.F280I|1|0.14|ENSG00000055957|chr3:52782175-52782175|T/A|missense_variant	ITIH1|p.F280I|1|0.14|ENSG00000055957|chr3:52782175-52782175|T/A|missense_variant	ITIH1|p.F280I|1|0.14|ENSG00000055957|chr3:52782175-52782175|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	527.7496948242188	2	527.266876	1052.5192	0.34126	0.00017994	2.3553	0.0012419	2.6965	0.0014218	527.7681719883392	16.149	0.26123	15.815	15.637	15.898	-0.33451					6	4	2	0	0	0	0.23716	1	5406	5406		19.439	4.8573	1	2887800			22287	9250	14002	14081	21426	21426					-0.004959732885254198
NHHWWCFVCK	10	Unmodified	_NHHWWCFVCK_					0	0	0			REV__TYW1B|p.L552Yfs*11|1|0.05|ENSG00000277149|chr7:72616803-72616804|-/AATA|frameshift_variant	REV__TYW1B|p.L552Yfs*11|1|0.05|ENSG00000277149|chr7:72616803-72616804|-/AATA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	453.8680114746094	3	453.86731	1358.5801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.058	1	13.898	13.398	14.398	-0.16089								0	0	0	0.96937	1	4436	4436		0.13989	0	1		+		22288	14461	14003	14082	21427	21427					-0.08484527572272782
NHPDQGGG	8	Unmodified	_NHPDQGGG_					0	0	0		nc|ENSG00000293134|O15428|PIN1P1	nc|ENSG00000293134|O15428|PIN1P1	nc|ENSG00000293134|O15428|PIN1P1	MSMS	HCT116MG_D190212_S2	2	391.2842102050781	2	391.164816	780.31508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.929	1	12.632	12.132	13.132	-0.29721								0	0	0	0.8837	1	4230	4230		0	0	1				22289	9681	14004	14083	21428	21428					-0.08386537449837306
NHQLLRARRRR	11	Unmodified	_NHQLLRARRRR_					0	0	0			REV__sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	REV__sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	492.634765625	3	492.634536	1474.88178	0.16641	8.1978E-05	0.18501	9.1144E-05	0.35142	0.00017312	492.63462621867694	54.71	1.2021	54.414	53.668	54.87	-0.29587					47	22	3	0	0	0	0.74191	1	20649	20649		0.08335	0	1	6084600	+		22290	17580	14005	14084	21429	21429					0.16333277833746251
NHRYMYWYRQD	11	Unmodified	_NHRYMYWYRQD_					0	0	0		nc|ENSG00000275791|A0A0K0K1G6|TRBV10-3	nc|ENSG00000275791|A0A0K0K1G6|TRBV10-3	nc|ENSG00000275791|A0A0K0K1G6|TRBV10-3	MSMS	HCT116MG_D190212_S1	1	816.42626953125	2	816.362241	1630.70993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.122	1	40.122	39.622	40.622	0								0	0	0	0.9598	1	15071	15071		1.1933	1.1933	1				22291	9664	14006	14085	21430	21430					-0.08019679759422615
NIANHFFTV	9	Unmodified	_NIANHFFTV_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1;ENSG00000117143|ENST00000367925|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	532.1512451171875	2	531.771991	1061.52943	0.43658	0.00023216	-0.013937	-7.4111E-06	0.42264	0.00022475	531.7718215818758	51.457	0.25801	51.275	51.117	51.375	-0.18149					10	4	3	0	0	0	0.25004	1	19696	19696		15.847	5.7733	1	29284000			22292	2559	14007	14086	21431	21431					0.0011258964602802735
NIDEGPLAF	9	Unmodified	_NIDEGPLAF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	HCT116MG_D190212_S2	2	975.4779052734375	1	975.478188	974.470912	0.64932	0.0006334	-0.33075	-0.00032264	0.31858	0.00031076	975.4781799362468	54.979	0.25521	54.791	54.662	54.918	-0.18797					7	4	2	0	0	0	0.01389	1	21199	21199		103.75	51.48	1	41908000			22293	3376	14008	14087	21432	21432					-0.01734511719087095
NIDLVRVRLEL	11	Unmodified	_NIDLVRVRLEL_					0	0	0			REV__ENSG00000134760|ENST00000257192|DSG1	REV__ENSG00000134760|ENST00000257192|DSG1	MULTI-MSMS	HCT116MG_D190212_S2	2	670.4069213867188	2	670.406444	1338.79833	0.4334	0.00029055	-0.66176	-0.00044365	-0.22836	-0.00015309	670.4059019137607	56.245	0.36127	56.062	55.898	56.259	-0.18261					13	6	3	0	0	0	0.74191	1	21722	21722		2.7352	0.23671	1	11520000	+		22294	12066	14009	14088	21433	21433					0.14248683822711428
NIDLVRVRLEL	11	Unmodified	_NIDLVRVRLEL_					0	0	0			REV__ENSG00000134760|ENST00000257192|DSG1	REV__ENSG00000134760|ENST00000257192|DSG1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	670.406444	1338.79833	0.4334	0.00029055	-0.66176	-0.00044365	-0.22836	-0.00015309	670.4059019137607	56.245	0.36127	56.062	55.898	56.259	-0.18261	0.18912	0.00018542	NaN	2.7352	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11520000	+		22295	12066	14009	14088							0.14248683822711428
NIDNPDLAKY	10	Unmodified	_NIDNPDLAKY_					0	0	0		nc|ENSG00000162971|A2RUC4-2|TYW5;ENST00000452512.6_1_2:200797792-200820219:-|nuORF;ENSG00000162971|ENST00000354611|TYW5	nc|ENSG00000162971|A2RUC4-2|TYW5	nc|ENSG00000162971|A2RUC4-2|TYW5	MSMS	HCT116MG_D190212_S2	2	581.7904052734375	2	581.790578	1161.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.485	1	35.342	34.842	35.842	-0.14245								0	0	0	0.35951	1	13238	13238		55.235	23.197	1				22296	4570	14010	14089	21434	21434					-0.007717835988614752
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(130)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	527.2498168945312	2	527.2497	1052.48485	0.28504	0.00015028	0.24101	0.00012707	0.52605	0.00027736	527.2497068340986	43.267	0.31237	43.267	43.056	43.368	0					12	5	3	0	0	0	0.0058997	1	16334	16334		129.77	72.301	1	25337000			22297	2512	14011	14090	21435	21435		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(68)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	527.8165283203125	2	527.2497	1052.48485	0.24636	0.0001299	-0.25986	-0.00013701	-0.013494	-7.1149E-06	527.2495148207086	43.652	0.25737	43.652	43.524	43.781	0					7	4	2	0	0	0	0.055733	1	16469	16469		67.838	37.202	1	31503000			22298	2512	14011	14090	21436	21436		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(130)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.7510986328125	2	527.2497	1052.48485	0.062377	3.2888E-05	0.02941	1.5506E-05	0.091786	4.8394E-05	527.2497260028902	43.35	0.41308	43.277	43.045	43.458	-0.073376					18	7	3	0	0	0	0.0058997	1	16425	16425		129.77	72.301	1	94681000			22299	2512	14011	14090	21437	21437		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(160)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1053.4927978515625	1	1053.49212	1052.48485	0.24501	0.00025812	0.79581	0.00083838	1.0408	0.0010965	1053.4927697508608	43.346	0.36174	43.272	43.045	43.407	-0.073372					13	6	3	0	0	0	0.003706	1	16436	16436		155.03	93.669	1	32584000			22300	2512	14011	14090	21438	21438		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(58)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.24951171875	2	527.2497	1052.48485	0.68795	0.00036272	-0.41896	-0.00022089	0.26899	0.00014183	527.249421748656	43.763	0.46278	43.685	43.453	43.916	-0.078373					21	8	4	0	0	0	0.10244	1	16674	16674		57.722	30.838	1	84146000			22301	2512	14011	14090	21439	21439		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(140)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	527.249267578125	2	527.2497	1052.48485	0.46685	0.00024615	-0.20478	-0.00010797	0.26207	0.00013818	527.2494204174208	43.554	0.3643	43.248	43.032	43.396	-0.30616					17	6	4	0	0	0	0.0045841	1	16246	16246		142.08	74.736	1	24501000			22302	2512	14011	14090	21440	21440		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(140)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1053.4927978515625	1	1053.49212	1052.48485	0.66766	0.00070337	0.22344	0.00023539	0.8911	0.00093877	1053.4920125105216	43.52	0.31242	43.214	43.084	43.396	-0.30616					7	5	2	0	0	0	0.0045841	1	16269	16269		142.08	80.722	1	5526400			22303	2512	14011	14090	21441	21441		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(120)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	527.2500610351562	2	527.2497	1052.48485	0.51698	0.00027258	0.016571	8.737E-06	0.53355	0.00028132	527.2496244239314	43.972	0.46874	43.666	43.448	43.917	-0.30616					21	8	4	0	0	0	0.0080847	1	16474	16474		118.07	65.8	1	26198000			22304	2512	14011	14090	21442	21442		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(44)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	527.2499389648438	2	527.2497	1052.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.238	1	43.93	43.43	44.43	-0.30759								0	0	0	0.2496	1	16531	16531		43.772	13.548	1				22305	2512	14011	14090	21443	21443		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(130)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	527.2493896484375	2	527.2497	1052.48485	0.39567	0.00020862	-0.32822	-0.00017305	0.067452	3.5564E-05	527.2495475117831	43.615	0.33891	43.241	43.076	43.415	-0.37433					13	6	3	0	0	0	0.0058997	1	16031	16031		129.77	69.383	1	11729000			22306	2512	14011	14090	21444	21444		49			-0.03929602282300948
NIDPITMAY	9	Oxidation (M)	_NIDPITM(Oxidation (M))AY_		NIDPITM(1)AY		NIDPITM(46)AY	0	0	1		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	527.2500610351562	2	527.2497	1052.48485	0.40264	0.00021229	-0.034322	-1.8096E-05	0.36831	0.00019419	527.2497138308241	44.023	0.36275	43.649	43.468	43.83	-0.37373					15	6	3	0	0	0	0.16144	1	16272	16272		46.021	16.939	1	12323000			22307	2512	14011	14090	21445	21445		49			-0.03929602282300948
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	519.2518920898438	2	519.252243	1036.48993	0.32131	0.00016684	0.10024	5.2051E-05	0.42155	0.00021889	519.2521479602924	51.678	0.3605	51.678	51.5	51.861	0					16	6	3	0	0	0	0.034046	1	19736	19736		82.529	32.596	1	129010000			22308	2512	14011	14091	21446	21446					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1037.4981689453125	1	1037.49721	1036.48993	0.76329	0.00079191	-0.10795	-0.000112	0.65534	0.00067991	1037.4970394427564	51.669	0.30658	51.669	51.5	51.807	0					14	5	3	0	0	0	0.0045841	1	19746	19746		142.08	84.608	1	66399000			22309	2512	14011	14091	21447	21447					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1037.498046875	1	1037.49721	1036.48993	0.82216	0.00085299	-0.16991	-0.00017628	0.65225	0.00067671	1037.4970936778752	51.94	0.61887	51.756	51.527	52.145	-0.18368					32	11	4	0	0	0	0.0042464	1	19903	19903		147.06	89.588	1	438800000			22310	2512	14011	14091	21448	21448					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2521362304688	2	519.252243	1036.48993	0.4687	0.00024338	-0.032053	-1.6644E-05	0.43665	0.00022673	519.2521605327183	51.924	0.67014	51.74	51.527	52.197	-0.18369					38	12	5	0	0	0	0.016744	1	19905	19905		99.755	42.284	1	565610000			22311	2512	14011	14091	21449	21449					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1037.49755859375	1	1037.49721	1036.48993	0.52522	0.00054492	0.16064	0.00016666	0.68586	0.00071158	1037.4974392974025	52.114	0.4944	51.805	51.645	52.14	-0.30927					20	9	3	0	0	0	0.0042464	3	19679	19649;19652;19679		147.06	89.588	1	35712000			22312	2512	14011	14091	21450;21451;21452	21452					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	519.2523803710938	2	519.252243	1036.48993	0.27375	0.00014214	0.20334	0.00010559	0.47709	0.00024773	519.2522862766227	52.112	0.59867	51.802	51.594	52.192	-0.30927					28	11	4	0	0	0	0.027442	1	19692	19692		88.954	31.483	1	90721000			22313	2512	14011	14091	21453	21453					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant;ENSG00000116285|ENST00000377482|ERRFI1	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	ERRFI1|p.L56M|1|0.35|ENSG00000116285|chr1:8015344-8015344|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	519.2523803710938	2	519.252243	1036.48993	0.29542	0.0001534	-0.073398	-3.8112E-05	0.22202	0.00011529	519.2521736486416	52.163	0.30901	51.817	51.674	51.983	-0.34538					12	5	3	0	0	0	0.053544	1	19455	19455		72.968	24.622	1	12028000			22314	2512	14011	14091	21454	21454					-0.02685298419692117
NIDVEPEIIP	10	Unmodified	_NIDVEPEIIP_					0	0	0			REV__tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	REV__tr|U7SX87|U7SX87_FUSNUFructose-bisphosphatealdolaseclass1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=fdaPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	569.77294921875	2	569.803154	1137.59175	0.74682	0.00042554	-0.041381	-2.3579E-05	0.70544	0.00040196	569.8031653018958	33.47	0.25578	33.277	33.071	33.327	-0.19296					5	4	2	0	0	0	0.23246	1	12398	12398		49.933	8.0934	1	4955800	+		22315	17861	14012	14092	21455	21455					0.028462712037253368
NIDVRQLHW	9	Unmodified	_NIDVRQLHW_					0	0	0		ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MSMS	HCT116MG_D190212_S3	3	590.814453125	2	590.814722	1179.61489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.081	1	37.779	37.279	38.279	-0.30137								0	0	0	0.7677	1	14094	14094		13.042	0	1				22316	6159	14013	14093	21456	21456					0.03226754831712242
NIELTYRL	8	Unmodified	_NIELTYRL_					0	0	0			REV__nc|ENSG00000161905|P16050-2|ALOX15	REV__nc|ENSG00000161905|P16050-2|ALOX15	MULTI-SECPEP	HCT116MG_D190212_S4	4	511.2404479980469	2	511.287474	1020.5604	0.014327	7.325E-06	-3.8265	-0.0019564	-3.8122	-0.0019491	511.784604941669	23.206	0.21095	22.958	22.853	23.063	-0.24775					5	3	2	0	0	0	0.31097	1	8105	8105		7.2892	0	1	1286600	+		22317	12860	14014	14094	21457	21457					0.05093742960275449
NIEPEETSRRT	11	Unmodified	_NIEPEETSRRT_					0	0	0		nc|nan|Q8N6N3-3|C1orf52;ENST00000294661.8_1_1:85724720-85725334:-|nuORF;nc|nan|Q8N6N3-2|C1orf52;ENSG00000162642|ENST00000471115|C1orf52	nc|nan|Q8N6N3-3|C1orf52	nc|nan|Q8N6N3-3|C1orf52	MSMS	HCT116MG_D190212_S1	1	666.332275390625	2	666.33113	1330.64771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.539	1	27.539	27.039	28.039	0								0	0	0	0.94755	1	9997	9997		7.609	0.50723	1				22318	4540	14015	14095	21458	21458					-0.004391276267824651
NIFDLYNKP	9	Unmodified	_NIFDLYNKP_					0	0	0			REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	375.19732666015625	3	375.197596	1122.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.655	1	10.655	10.155	11.155	0								0	0	0	0.76967	1	3284	3284		1.0715	0	1		+		22319	10378	14016	14096	21459	21459					0.014577256146822037
NIFFLPQP	8	Unmodified	_NIFFLPQP_					0	0	0			REV__ENSG00000146070|ENST00000274793|PLA2G7	REV__ENSG00000146070|ENST00000274793|PLA2G7	MSMS	HCT116MG_D190212_S2	2	488.2701416015625	2	488.268553	974.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.663	1	24.283	23.783	24.783	-0.38003								0	0	0	0.8837	1	8847	8847		13.508	0	1		+		22320	12472	14017	14097	21460	21460					0.03427276765478382
NIFWLLVGFI	10	Unmodified	_NIFWLLVGFI_					0	0	0		ENST00000397195.9_1_17:2497244-2541483:+|nuORF;ENST00000575477.5_1_17:2497248-2541480:+|nuORF	ENST00000397195.9_1_17:2497244-2541483:+|nuORF	ENST00000397195.9_1_17:2497244-2541483:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	611.35546875	2	611.35516	1220.69577	0.41258	0.00025223	1.2764	0.00078031	1.6889	0.0010325	611.3556180500974	49.517	0.46412	49.517	49.286	49.75	0					19	8	3	0	0	0	0.88076	1	18963	18963		3.2813	1.6287	1	73564000			22321	7665	14018	14098	21461	21461					0.09424642821886664
NIGGQAAV	8	Unmodified	_NIGGQAAV_					0	0	0			REV__nc|ENSG00000073578|P31040-3|SDHA	REV__nc|ENSG00000073578|P31040-3|SDHA	MSMS	HCT116MG_D190212_S2	2	365.1989440917969	2	365.198128	728.381703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.92	1	36.806	36.306	37.306	-0.11478								0	0	0	0.8837	1	13822	13822		6.3541	3.4649	1		+		22322	17078	14019	14099	21462	21462					0.00664698112041151
NIGMIRQWK	9	Unmodified	_NIGMIRQWK_					0	0	0			REV__MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant	REV__MPDZ|p.K1582Rfs*7|1|0.22|ENSG00000107186|chr9:13125278-13125278|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	573.3184814453125	2	573.316043	1144.61753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.336	1	52.336	51.836	52.836	0								0	0	0	0.76818	1	20015	20015		7.2892	0.18751	1		+		22323	11317	14020	14100	21463	21463					0.051008869650104316
NIHRKEIL	8	Unmodified	_NIHRKEIL_					0	0	0		tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1	tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1	tr|U7T1L4|U7T1L4_FUSNUSerine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=serSPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	512.2542114257812	2	511.808908	1021.60326	0.45734	0.00023407	-0.26883	-0.00013759	0.18851	9.648E-05	511.8088020644558	34.753	0.20742	34.595	34.45	34.657	-0.15834					5	3	2	0	0	0	0.28533	1	12959	12959		20.454	0	1	13565000			22324	18559	14021	14101	21464	21464					0.09332557808374986
NIIKEAVKKV	10	Unmodified	_NIIKEAVKKV_					0	0	0		tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	tr|U7STJ1|U7STJ1_FUSNUtetrahydrofolatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01423PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	381.2484436035156	3	381.248291	1140.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.538	1	49.176	48.676	49.676	-0.36213								0	0	0	0.96804	1	18378	18378		0.69767	0	1				22325	18443	14022	14102	21465	21465					0.15831126362240866
NIIMSIRP	8	Unmodified	_NIIMSIRP_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3;nc|ENSG00000080200|Q68DQ2-1|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MSMS	HCT116MG_D190212_S4	4	472.2747497558594	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.74	1	45.368	44.868	45.868	-0.37211								0	0	0	0.87079	1	16884	16884		16.942	4.4107	1				22326	1391	14023	14103	21466	21466					0.05850721779347623
NIIMSIRP	8	Unmodified	_NIIMSIRP_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3;nc|ENSG00000080200|Q68DQ2-1|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MSMS	HCT116MG_D190212_S4	4	472.2752380371094	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.379	1	50.02	49.52	50.52	-0.35878								0	0	0	0.87079	1	18716	18716		16.942	4.4107	1				22327	1391	14023	14103	21467	21467					0.05850721779347623
NIIRIFKKYRI	11	Unmodified	_NIIRIFKKYRI_					0	0	0		tr|U7STU4|U7STU4_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00985PE=4SV=1	tr|U7STU4|U7STU4_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00985PE=4SV=1	tr|U7STU4|U7STU4_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00985PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	732.4645385742188	2	732.464096	1462.91364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.862	1	59.702	59.202	60.202	-0.16012								0	0	0	0.96149	1	23156	23156		0.30703	0	1				22328	18453	14024	14104	21468	21468					0.20069832744366067
NIIRILVRKLE	11	Unmodified	_NIIRILVRKLE_					0	0	0		ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	MULTI-SECPEP	HCT116MG_D190212_S1	1	684.416748046875	2	683.948279	1365.882	0.64604	0.00044186	-0.37517	-0.00025659	0.27087	0.00018526	683.9481771991983	58.522	0.30488	58.522	58.413	58.717	0					6	5	2	0	0	0	0.36627	1	22560	22560		0.35063	0	1	8799500			22329	2061	14025	14105	21469	21469					0.21369839990393302
NIITEEQNDAK	11	Unmodified	_NIITEEQNDAK_					0	0	0			REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF	REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	638.8871459960938	2	637.814781	1273.61501	0.77889	0.00049679	-0.027968	-1.7838E-05	0.75092	0.00047895	637.8147862808369	14.52	0.31189	14.52	14.39	14.702	0					12	5	3	0	0	0	0.74191	1	4726	4726		5.2969	5.2969	1	24873000	+		22330	16541	14026	14106	21470	21470					-0.010853347496095012
NIITPRRS	8	Unmodified	_NIITPRRS_					0	0	0		ENST00000468499.5_1_7:99687333-99688626:+|nuORF;ENST00000465027.1_1_7:99687333-99687384:+|nuORF	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	478.7940673828125	2	478.785433	955.556313	0.107	5.1229E-05	0.31982	0.00015313	0.42682	0.00020435	478.78551142131914	49.415	1.8583	49.415	48.819	50.678	0					67	35	5	0	0	0	0.7524	1	18990	18990		16.942	0	1	4632200000			22331	8129	14027	14107	21471	21471					0.07675698257230579
NIKELQLPLSY	11	Unmodified	_NIKELQLPLSY_					0	0	0		PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant;nc|ENSG00000138193|Q9P212-2|PLCE1;PLCE1|p.E2087Gfs*37|1|0.1|ENSG00000138193|chr10:94316672-94316676|AGAAG/-|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1	PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant	PLCE1|p.A1544Pfs*9|1|0.07|ENSG00000138193|chr10:94273681-94273681|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	659.3734130859375	2	659.374278	1316.734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.032	1	37.939	37.439	38.439	-0.09301								0	0	0	0.92983	1	14275	14275		16.149	1.3108	1				22332	3542	14028	14108	21472	21472					0.08830483945916967
NIKPIYSKK	9	Unmodified	_NIKPIYSKK_					0	0	0			REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	REV__tr|U7SJ90|U7SJ90_FUSNUtRNA(Ile)-lysidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=tilSPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	545.8339233398438	2	545.834591	1089.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.363	1	14.202	13.702	14.702	-0.16089								0	0	0	0.76886	1	4543	4543		4.3292	0	1		+		22333	17690	14029	14109	21473	21473					0.11338881782398857
NIKVFRHA	8	Unmodified	_NIKVFRHA_					0	0	0		tr|U7SST6|U7SST6_FUSNUDolichol-phosphatemannosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01489PE=4SV=1	tr|U7SST6|U7SST6_FUSNUDolichol-phosphatemannosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01489PE=4SV=1	tr|U7SST6|U7SST6_FUSNUDolichol-phosphatemannosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01489PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	493.448974609375	2	492.790518	983.566484	-0.0058583	-2.8869E-06	-0.040656	-2.0035E-05	-0.046514	-2.2922E-05	492.7904744476223	49.649	0.40721	49.485	49.228	49.636	-0.16369					11	7	3	0	0	0	0.27349	1	19031	19031		23.148	5.0134	1	15068000			22334	18422	14030	14110	21474	21474					0.07404305982470305
NILFFPVSI	9	Unmodified	_NILFFPVSI_					0	0	0		nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	MSMS	HCT116MG_D190212_S3	3	525.3065795898438	2	525.305136	1048.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.572	1	48.256	47.756	48.756	-0.31596								0	0	0	0.64498	1	18272	18272		21.747	4.8044	1				22335	9678	14031	14111	21475	21475					0.07336405488103992
NILKGNIQLTR	11	Unmodified	_NILKGNIQLTR_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	635.0028686523438	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.064	1	49.901	49.401	50.401	-0.16369								0	0	0	0.9465	1	19179	19179		8.1555	1.9497	1				22336	4672	14032	14112	21476	21476					0.13284128134182538
NILLAFTK	8	Unmodified	_NILLAFTK_					0	0	0		SCN7A|p.D1576N|1|0.29|ENSG00000136546|chr2:166405903-166405903|C/T|missense_variant	SCN7A|p.D1576N|1|0.29|ENSG00000136546|chr2:166405903-166405903|C/T|missense_variant	SCN7A|p.D1576N|1|0.29|ENSG00000136546|chr2:166405903-166405903|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	460.2830505371094	2	460.284203	918.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.165	1	41.79	41.29	42.29	-0.37565								0	0	0	0.8837	1	15487	15487		4.756	0	1				22337	18136	14033	14113	21477	21477					0.09131849799564407
NILQLLNNLGP	11	Unmodified	_NILQLLNNLGP_					0	0	0		ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;RAVER1|p.P366Qfs*169|1|0.32|ENSG00000161847|chr19:10322721-10322721|G/-|frameshift_variant;RAVER1|p.K358Sfs*177|2|0.26|ENSG00000161847|chr19:10323152-10323152|C/-|frameshift_variant;nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1	ENSG00000161847|ENST00000617231|RAVER1	ENSG00000161847|ENST00000617231|RAVER1	MSMS	HCT116MG_D190212_S2	2	605.277099609375	2	604.853512	1207.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.396	1	15.069	14.569	15.569	-0.32684								0	0	0	0.95521	1	5112	5112		3.5965	0	1				22338	4499	14034	14114	21478	21478					0.09693347977213307
NILSQDSQHV	10	Unmodified	_NILSQDSQHV_					0	0	0		CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant;CEP162|p.R1099Efs*46|2|0.27|ENSG00000135315|chr6:84152880-84152881|-/T|frameshift_variant;CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162;ENST00000497936.5_1_6:84884653-84936120:-|nuORF;CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant	CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	570.784423828125	2	570.785827	1139.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.785	1	47.652	47.152	48.152	-0.13281								0	0	0	0.92607	1	18237	18237		10.074	1.3285	1				22339	403	14035	14115	21479	21479					-0.007095518843698301
NILWKYKDP	9	Unmodified	_NILWKYKDP_					0	0	0		tr|U7T3I7|U7T3I7_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00291PE=4SV=1	tr|U7T3I7|U7T3I7_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00291PE=4SV=1	tr|U7T3I7|U7T3I7_FUSNUToprimdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00291PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	589.2872924804688	2	588.824224	1175.63389	0.58451	0.00034417	-0.42909	-0.00025266	0.15541	9.1512E-05	588.823753968361	16.753	0.20848	16.411	16.308	16.516	-0.34183					7	3	3	0	0	0	0.60612	1	5626	5626		10.824	2.9138	1	2355500			22340	18600	14036	14116	21480	21480					0.05310291402770417
NIMFYRKI	8	Unmodified	_NIMFYRKI_					0	0	0		ENST00000261866.11_1_15:44943898-44943967:-|nuORF	ENST00000261866.11_1_15:44943898-44943967:-|nuORF	ENST00000261866.11_1_15:44943898-44943967:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	543.4279174804688	2	542.802237	1083.58992	0.59712	0.00032412	-0.22834	-0.00012394	0.36878	0.00020017	542.8020257783594	14.572	0.20794	14.572	14.442	14.65	0					5	3	2	0	0	0	0.85571	1	4752	4752		2.8892	2.0956	1	3726200			22341	6857	14037	14117	21481	21481					0.05146983704776176
NINENKNIP	9	Unmodified	_NINENKNIP_					0	0	0		CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant;ENSG00000184661|ENST00000330560|CDCA2	CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant	CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	528.2659912109375	2	528.277638	1054.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.873	1	28.532	28.032	29.032	-0.34059								0	0	0	0.76077	1	10402	10402		16.942	3.8998	1				22342	379	14038	14118	21482	21482					0.015633669495173308
NINLHQEP	8	Unmodified	_NINLHQEP_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MSMS	HCT116MG_D190212_S3	3	482.74627685546875	2	482.745973	963.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.568	1	38.267	37.767	38.767	-0.30137								0	0	0	0.69969	1	14292	14292		30.637	10.183	1				22343	3463	14039	14119	21483	21483					-0.005805737677178513
NIPKPDEA	8	Unmodified	_NIPKPDEA_					0	0	0		nc|ENSG00000168615|Q13443-2|ADAM9;ADAM9|p.Y678Wfs*15|1|0.05|ENSG00000168615|chr8:39083037-39083038|-/GGAAACC|frameshift_variant;ENSG00000168615|ENST00000487273|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	MSMS	HCT116MG_D190212_S1	1	442.228271484375	2	442.229625	882.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.586	1	34.586	34.086	35.086	0								0	0	0	0.8837	1	12837	12837		5.2307	0.90143	1				22344	41	14040	14120	21484	21484					-0.0012278089056962926
NISENLNYY	9	Unmodified	_NISENLNYY_					0	0	0		PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant;PRDM2|p.N1426Ifs*3|1|0.17|ENSG00000116731|chr1:13782065-13782065|A/-|frameshift_variant;nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;PRDM2|p.P1648Qfs*14|1|0.24|ENSG00000116731|chr1:13782731-13782731|G/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant	PRDM2|p.G1390Efs*14|1|0.21|ENSG00000116731|chr1:13781963-13781964|GG/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	565.2594604492188	2	565.261653	1128.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.017	1	50.017	49.517	50.517	0								0	0	0	0.76603	1	19074	19074		14.838	3.198	1				22345	2532	14041	14121	21485	21485					-0.05036045524275323
NITHYILIHY	10	Unmodified	_NITHYILIHY_					0	0	0			REV__ENST00000370331.5_1_1:93201975-93202140:-|nuORF	REV__ENST00000370331.5_1_1:93201975-93202140:-|nuORF	MSMS	HCT116MG_D190212_S2	2	643.845703125	2	643.84823	1285.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.073	1	41.004	40.504	41.504	-0.068386								0	0	0	0.92607	1	15508	15508		10.074	0.52995	1		+		22346	15154	14042	14122	21486	21486					0.05049365322815902
NITKYALNTTT	11	Unmodified	_NITKYALNTTT_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MSMS	HCT116MG_D190212_S2	2	620.3448486328125	2	620.33261	1238.65067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.047	1	17.691	17.191	18.191	-0.35647								0	0	0	0.94145	1	6179	6179		10.8	0.72558	1				22347	6619	14043	14123	21487	21487					0.04088747498030898
NITLLRIFR	9	Unmodified	_NITLLRIFR_					0	0	0		PTPRR|p.L194Cfs*48|1|0.26|ENSG00000153233|chr12:70761517-70761517|A/-|frameshift_variant;PTPRR|p.N498Mfs*25|1|0.47|ENSG00000153233|chr12:70684131-70684131|T/-|frameshift_variant;nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR	PTPRR|p.L194Cfs*48|1|0.26|ENSG00000153233|chr12:70761517-70761517|A/-|frameshift_variant	PTPRR|p.L194Cfs*48|1|0.26|ENSG00000153233|chr12:70761517-70761517|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	572.969482421875	2	573.361308	1144.70806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.552	1	46.441	45.941	46.941	-0.11121								0	0	0	0.46109	1	17735	17735		30.637	1.555	1				22348	4184	14044	14124	21488	21488					0.14149679284946615
NITPWRKWEWR	11	Unmodified	_NITPWRKWEWR_					0	0	0		ENST00000381989.3_1_13:25072288-25074457:-|nuORF	ENST00000381989.3_1_13:25072288-25074457:-|nuORF	ENST00000381989.3_1_13:25072288-25074457:-|nuORF	MSMS	HCT116MG_D190212_S3	3	524.9669799804688	3	524.612515	1570.81572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.332	1	50.017	49.517	50.517	-0.31525								0	0	0	0.9581	1	18977	18977		2.084	1.6757	1				22349	7579	14045	14125	21489	21489					0.05314024148333374
NITRELTLP	9	Unmodified	_NITRELTLP_					0	0	0			REV__ENST00000567110.1_1_16:56481699-56485159:-|nuORF	REV__ENST00000567110.1_1_16:56481699-56485159:-|nuORF	MSMS	HCT116MG_D190212_S3	3	528.6235961914062	2	528.806031	1055.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.326	1	50.01	49.51	50.51	-0.31525								0	0	0	0.76575	1	18974	18974		15.847	0.5987	1		+		22350	13133	14046	14126	21490	21490					0.07193414506036788
NITTDKEKYN	10	Unmodified	_NITTDKEKYN_					0	0	0		tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	409.2088317871094	3	409.20682	1224.59863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.112	1	27.782	27.282	28.282	-0.32987								0	0	0	0.92272	1	10241	10241		6.1918	2.3155	1				22351	18321	14047	14127	21491	21491					-0.004684159157022805
NIVAGQRSI	9	Unmodified	_NIVAGQRSI_					0	0	0		AGO4|p.C342S|1|0.42|ENSG00000134698|chr1:35831839-35831839|T/A|missense_variant	AGO4|p.C342S|1|0.42|ENSG00000134698|chr1:35831839-35831839|T/A|missense_variant	AGO4|p.C342S|1|0.42|ENSG00000134698|chr1:35831839-35831839|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2774963378906	2	479.277441	956.540328	0.2371	0.00011364	0.10219	4.8979E-05	0.33929	0.00016262	479.27729156848676	45.477	1.6526	45.384	44.683	46.336	-0.092472					69	31	3	0	0	0	0.53593	1	17098	17098		14.838	1.3304	1	22436000			22352	78	14048	14128	21492	21492					0.06031992020314192
NIVDQRVAL	9	Unmodified	_NIVDQRVAL_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	HCT116MG_D190212_S4	4	514.7383422851562	2	514.298373	1026.58219	0.25341	0.00013033	0.012174	6.2613E-06	0.26558	0.00013659	514.2982963912965	52.466	0.83145	52.125	51.73	52.561	-0.34023					34	15	3	0	0	0	0.26009	1	19718	19718		3.5965	3.1958	1	9555500	+		22353	11027	14049	14129	21493	21493					0.0699654770885445
NIVEKLREV	9	Unmodified	_NIVEKLREV_					0	0	0		nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;TRIM5|p.N390Kfs*2|1|0.25|ENSG00000132256|chr11:5665121-5665122|-/T|frameshift_variant;nc|ENSG00000132256|Q9C035-2|TRIM5;ENSG00000132256|ENST00000380034|TRIM5	nc|ENSG00000132256|Q9C035-6|TRIM5	nc|ENSG00000132256|Q9C035-6|TRIM5	MULTI-MSMS	HCT116MG_D190212_S2	2	550.327392578125	2	550.327131	1098.63971	0.51331	0.00028249	-0.14336	-7.8894E-05	0.36995	0.0002036	550.3267437259583	39.054	0.46507	38.97	38.754	39.219	-0.084618					13	8	3	0	0	0	0.0068642	1	14683	14683		121.35	28.18	1	55392000			22354	3174	14050	14130	21494	21494					0.09433389914420331
NIVEKLREV	9	Unmodified	_NIVEKLREV_					0	0	0		nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;TRIM5|p.N390Kfs*2|1|0.25|ENSG00000132256|chr11:5665121-5665122|-/T|frameshift_variant;nc|ENSG00000132256|Q9C035-2|TRIM5;ENSG00000132256|ENST00000380034|TRIM5	nc|ENSG00000132256|Q9C035-6|TRIM5	nc|ENSG00000132256|Q9C035-6|TRIM5	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	550.327131	1098.63971	0.26642	0.00014662	0.45928	0.00025275	0.7257	0.00039937	550.3272466203088	39.033	0.20811	39.033	38.903	39.111	0	0.031563	9.4347E-05	NaN	121.35	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16494000			22355	3174	14050	14130							0.09433389914420331
NIVKLLEKQY	10	Unmodified	_NIVKLLEKQY_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T1942Lfs*3|3|0.18|ENSG00000127914|chr7:92062328-92062328|A/-|frameshift_variant;AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MSMS	HCT116MG_D190212_S2	2	624.3706665039062	2	624.371538	1246.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.153	1	49.985	49.485	50.485	-0.16715								0	0	0	0.92917	1	19215	19215		9.3831	3.1773	1				22356	2979	14051	14131	21495	21495					0.11502805154100315
NIVKQNKF	8	Unmodified	_NIVKQNKF_					0	0	0			REV__tr|U7SJL8|U7SJL8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02102PE=4SV=1	REV__tr|U7SJL8|U7SJL8_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02102PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	495.7900695800781	2	495.790184	989.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.395	1	52.089	51.589	52.589	-0.30639								0	0	0	0.8837	1	19806	19806		8.5933	0	1		+		22357	17696	14052	14132	21496	21496					0.07061466542756989
NIVKRKVFKDW	11	Unmodified	_NIVKRKVFKDW_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MSMS	HCT116MG_D190212_S1	1	716.9239501953125	2	716.924803	1431.83505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.903	1	43.903	43.403	44.403	0								0	0	0	0.95581	1	16600	16600		3.2813	0.28607	1		+		22358	14155	14053	14133	21497	21497					0.13640980439254236
NIVKWFWKAVE	11	Unmodified	_NIVKWFWKAVE_					0	0	0		ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000108854|ENST00000262435|SMURF2	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MSMS	HCT116MG_D190212_S2	2	710.3915405273438	2	710.392805	1418.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.672	1	34.514	34.014	35.014	-0.15834								0	0	0	0.95273	1	12908	12908		4.897	1.3005	1				22359	2187	14054	14134	21498	21498					0.07842200282311751
NIVPPNDNT	9	Unmodified	_NIVPPNDNT_					0	0	0			REV__PCDH19|p.P364Rfs*4|6|0.42|ENSG00000165194|chrX:100407507-100407507|G/-|frameshift_variant	REV__PCDH19|p.P364Rfs*4|6|0.42|ENSG00000165194|chrX:100407507-100407507|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	492.2430114746094	2	492.243264	982.471974	0.07593	3.7376E-05	0.016322	8.0343E-06	0.092252	4.541E-05	492.2433665677133	31.016	0.46915	30.755	30.448	30.917	-0.26071					12	8	2	0	0	0	0.63131	1	11359	11359		9.3831	0	1	3649000	+		22360	13040	14055	14135	21499	21499					-0.019962973501833403
NIYNVVLFIL	10	Unmodified	_NIYNVVLFIL_					0	0	0			REV__tr|U7STU4|U7STU4_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00985PE=4SV=1	REV__tr|U7STU4|U7STU4_FUSNURadicalSAMcoredomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00985PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	604.3588256835938	2	604.357899	1206.70125	0.77047	0.00046564	0.43662	0.00026387	1.2071	0.00072951	604.3580421441781	59.309	0.64625	59.147	58.664	59.31	-0.16228					40	20	3	0	0	0	0.89248	1	22889	22889		0.45834	0	1	2483000	+		22361	17810	14056	14136	21500	21500					0.10616321613701984
NKARPAGG	8	Unmodified	_NKARPAGG_					0	0	0		ENST00000527920.5_1_11:65339976-65340141:+|nuORF	ENST00000527920.5_1_11:65339976-65340141:+|nuORF	ENST00000527920.5_1_11:65339976-65340141:+|nuORF	MSMS	HCT116MG_D190212_S1	1	385.7168884277344	2	385.717019	769.419485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.963	1	14.963	14.463	15.463	0								0	0	0	0.8837	1	4937	4937		4.756	0	1				22362	8599	14057	14137	21501	21501					0.025552090975224928
NKCCFIVAI	9	Unmodified	_NKCCFIVAI_					0	0	0		ENST00000409381.5_1_2:150327439-150327625:+|nuORF	ENST00000409381.5_1_2:150327439-150327625:+|nuORF	ENST00000409381.5_1_2:150327439-150327625:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	505.7612609863281	2	505.761723	1009.50889	0.40544	0.00020506	-1.6856	-0.00085253	-1.2802	-0.00064747	505.7609828942579	25.478	0.20933	25.109	24.978	25.187	-0.36914					5	3	2	0	0	0	0.21838	1	9191	9191		26.884	2.2098	1	5793100			22363	7726	14058	14138	21502	21502					0.004519596703744355
NKDAAELEKG	10	Unmodified	_NKDAAELEKG_					0	0	0			REV__MAGI3|p.R1443Hfs*9|1|0.06|ENSG00000081026|chr1:113683894-113683895|-/CATTTTCTCCTATTTTATCGTTACT|frameshift_variant	REV__MAGI3|p.R1443Hfs*9|1|0.06|ENSG00000081026|chr1:113683894-113683895|-/CATTTTCTCCTATTTTATCGTTACT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	358.8523864746094	3	358.852377	1073.5353	-0.0045477	-1.6319E-06	0.66404	0.00023829	0.65949	0.00023666	358.85240169503464	21.307	0.31182	21.097	20.967	21.279	-0.20959					9	5	3	0	0	0	0.64492	1	7373	7373		17.049	0	1	3073800	+		22364	10874	14059	14139	21503	21503					0.001476433670404731
NKEKDSLP	8	Unmodified	_NKEKDSLP_					0	0	0			REV__ITPR1|p.F855L|1|0.14|ENSG00000150995|chr3:4674310-4674310|C/A|missense_variant	REV__ITPR1|p.F855L|1|0.14|ENSG00000150995|chr3:4674310-4674310|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	465.7478332519531	2	465.748182	929.481811	0.36865	0.0001717	-1.039	-0.0004839	-0.67032	-0.0003122	465.7476128341362	22.317	0.15528	21.932	21.843	21.999	-0.3852					4	2	2	0	0	0	0.62424	1	7922	7922		30.225	1.738	1	11675000	+		22365	16912	14060	14140	21504	21504					0.014248906551870277
NKEKDSLP	8	Unmodified	_NKEKDSLP_					0	0	0			REV__ITPR1|p.F855L|1|0.14|ENSG00000150995|chr3:4674310-4674310|C/A|missense_variant	REV__ITPR1|p.F855L|1|0.14|ENSG00000150995|chr3:4674310-4674310|C/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	465.2052001953125	2	465.748182	929.481811	0.30416	0.00014166	1.0665	0.00049672	1.3707	0.00063838	465.7483493103492	21.808	0.62561	21.809	21.677	22.302	0.00074577					17	11	3	0	0	0	0.27349	1	7599	7599		30.225	1.738	1	2577100	+		22366	16912	14060	14140	21505	21505					0.014248906551870277
NKERKIDV	8	Unmodified	_NKERKIDV_					0	0	0			REV__nc|ENSG00000130783|Q6P9F0-3|CCDC62	REV__nc|ENSG00000130783|Q6P9F0-3|CCDC62	MSMS	HCT116MG_D190212_S4	4	501.2904968261719	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.221	1	44.849	44.349	45.349	-0.37266								0	0	0	0.82692	1	16674	16674		20.454	0	1		+		22367	10117	14061	14141	21506	21506					0.06628261191804086
NKGNEGKIKI	10	Unmodified	_NKGNEGKIKI_					0	0	0			REV__nc|ENSG00000159788|O14924-2|RGS12	REV__nc|ENSG00000159788|O14924-2|RGS12	MSMS	HCT116MG_D190212_S1	1	367.5535888671875	3	367.552262	1099.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.501	1	34.501	34.001	35.001	0								0	0	0	0.95776	1	12803	12803		1.4551	0	1		+		22368	12813	14062	14142	21507	21507					0.0891250577167284
NKIKLRIRNFF	11	Unmodified	_NKIKLRIRNFF_					0	0	0		tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1	tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1	tr|U7SLC0|U7SLC0_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01962PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	483.6348571777344	3	483.633139	1447.87759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.196	1	52.893	52.393	53.393	-0.30305								0	0	0	0.96111	1	20128	20128		0.50596	0.41111	1				22369	18335	14063	14143	21508	21508					0.17156375567469695
NKKYRYDWYKP	11	Unmodified	_NKKYRYDWYKP_					0	0	0			REV__nc|ENSG00000241484|P85298|ARHGAP8	REV__nc|ENSG00000241484|P85298|ARHGAP8	MSMS	HCT116MG_D190212_S2	2	520.6025390625	3	520.936776	1559.7885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.941	1	32.73	32.23	33.23	-0.21135								0	0	0	0.96121	1	12206	12206		0.45452	0.046251	1		+		22370	17307	14064	14144	21509	21509					0.030994958172868792
NKLKRLIRKL	10	Unmodified	_NKLKRLIRKL_					0	0	0			REV__ENST00000443509.6_1_9:79322772-79322814:-|nuORF	REV__ENST00000443509.6_1_9:79322772-79322814:-|nuORF	MSMS	HCT116MG_D190212_S2	2	641.25390625	2	641.445706	1280.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.449	1	48.306	47.806	48.806	-0.1437								0	0	0	0.95776	1	18511	18511		2.9952	0.71247	1		+		22371	15659	14065	14145	21510	21510					0.2476558091843799
NKLQDKIEK	9	Unmodified	_NKLQDKIEK_					0	0	0		PACSIN2|p.K188N|2|0.39|ENSG00000100266|chr22:42888688-42888688|C/A|missense_variant	PACSIN2|p.K188N|2|0.39|ENSG00000100266|chr22:42888688-42888688|C/A|missense_variant	PACSIN2|p.K188N|2|0.39|ENSG00000100266|chr22:42888688-42888688|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	559.2650756835938	2	558.324588	1114.63462	0.52462	0.00029291	0.31133	0.00017382	0.83594	0.00046673	558.3246104970124	52.922	0.46269	52.922	52.69	53.153	0					15	8	3	0	0	0	0.69954	1	20249	20249		5.2969	0.76802	1	171050000			22372	9723	14066	14146	21511	21511					0.08189086051788763
NKPKLILADE	10	Unmodified	_NKPKLILADE_					0	0	0		tr|U7SKK8|U7SKK8_FUSNULipoprotein-releasingsystemATP-bindingproteinLolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02064PE=3SV=1	tr|U7SKK8|U7SKK8_FUSNULipoprotein-releasingsystemATP-bindingproteinLolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02064PE=3SV=1	tr|U7SKK8|U7SKK8_FUSNULipoprotein-releasingsystemATP-bindingproteinLolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02064PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	380.89093017578125	3	380.892284	1139.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.996	1	64.876	64.376	65.376	-0.11998								0	0	0	0.97045	1	25109	25109		0.15932	0	1				22373	18326	14067	14147	21512	21512					0.09078256711609356
NKQGVGGVP	9	Unmodified	_NKQGVGGVP_					0	0	0		ENST00000162391.7_1_12:8186139-8186325:+|nuORF	ENST00000162391.7_1_12:8186139-8186325:+|nuORF	ENST00000162391.7_1_12:8186139-8186325:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	429.0887145996094	2	428.237784	854.461016	0.056696	2.4279E-05	0.41104	0.00017602	0.46774	0.0002003	428.2377749091355	23.029	0.4165	22.996	22.829	23.245	-0.03363					11	7	2	0	0	0	0.45549	1	8056	8056		19.439	5.9311	1	6593800			22374	6714	14068	14148	21513	21513					0.027963450661900424
NKQRKRKLKRK	11	Unmodified	_NKQRKRKLKRK_					0	0	0		IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant;IGSF9B|p.T1083Hfs*72|2|0.42|ENSG00000080854|chr11:133920478-133920479|-/G|frameshift_variant;nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B	IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant	IGSF9B|p.T1083Pfs*48|1|0.11|ENSG00000080854|chr11:133920479-133920479|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	494.99072265625	3	494.998704	1481.97428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.475	1	49.32	48.82	49.82	-0.1554								0	0	0	0.96194	1	18936	18936		0.073264	0	1				22375	1404	14069	14149	21514	21514					0.2525736284726463
NKRIKVVLI	9	Unmodified	_NKRIKVVLI_					0	0	0			REV__ENSG00000130368|ENST00000674077|MAS1	REV__ENSG00000130368|ENST00000674077|MAS1	MULTI-SECPEP	HCT116MG_D190212_S2	2	541.2750244140625	2	541.874051	1081.73355	0.40283	0.00021828	0.26928	0.00014592	0.67211	0.0003642	541.8740723285248	32.354	0.2598	32.124	31.942	32.202	-0.23009					6	4	2	0	0	0	0.26009	1	11973	11973		6.7232	3.1267	1	10096000	+		22376	11918	14070	14150	21515	21515					0.19595153807381394
NKRILIKRL	9	Unmodified	_NKRILIKRL_					0	0	0			REV__ENSG00000180251|ENST00000295269|SLC9A4	REV__ENSG00000180251|ENST00000295269|SLC9A4	MSMS	HCT116MG_D190212_S3	3	385.2695617675781	3	385.267909	1152.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.516	1	57.242	56.742	57.742	-0.27434								0	0	0	0.77018	1	21859	21859		0.26902	0	1		+		22377	13654	14071	14151	21516	21516					0.21161647447274845
NKSFIQELRKD	11	Unmodified	_NKSFIQELRKD_					0	0	0		nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-MSMS	HCT116MG_D190212_S2	2	459.92108154296875	3	459.921014	1376.74121	0.052705	2.424E-05	-0.0095843	-4.408E-06	0.043121	1.9832E-05	459.9211221546273	15.789	0.26107	15.454	15.324	15.585	-0.33451					6	4	2	0	0	0	0.71776	1	5295	5295		8.7518	2.8836	1	4738000			22378	2745	14072	14152	21517	21517					0.06791216546298529
NKSGTKKL	8	Unmodified	_NKSGTKKL_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S3	3	438.26995849609375	2	438.269084	874.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.32	1	59.056	58.556	59.556	-0.26405								0	0	0	0.8837	1	22587	22587		2.3027	0	1		+		22379	12615	14073	14153	21518	21518					0.08133491134378801
NKTKKKQK	8	Unmodified	_NKTKKKQK_					0	0	0			REV__ENSG00000100852|ENST00000345122|ARHGAP5	REV__ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-SECPEP	HCT116MG_D190212_S1	1	502.35870361328125	2	501.824558	1001.63456	0.342	0.00017163	0.045034	2.2599E-05	0.38704	0.00019422	501.8244472792559	57.004	0.82891	57.004	56.583	57.412	0					22	15	2	0	0	0	0.32797	1	21984	21984		1.8442	1.2427	1	4982700	+		22380	11104	14074	14154	21519	21519					0.13381130842458333
NKVTRIQSM	9	Unmodified	_NKVTRIQSM_					0	0	0		nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;P2RX7|p.R178Gfs*5|1|0.45|ENSG00000089041|chr12:121162514-121162514|C/-|frameshift_variant;nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-2|P2RX7	nc|ENSG00000089041|Q99572-2|P2RX7	MSMS	HCT116MG_D190212_S1	1	538.7975463867188	2	538.797683	1075.58081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.404	1	34.404	33.904	34.904	0								0	0	0	0.76793	1	12764	12764		8.1555	0.24537	1				22381	1508	14075	14155	21520	21520					0.04604590348435522
NKYTKHFI	8	Unmodified	_NKYTKHFI_					0	0	0		nc|ENSG00000162779|Q5T1B0-2|AXDND1;AXDND1|p.L501Yfs*14|1|0.28|ENSG00000162779|chr1:179432278-179432278|T/-|frameshift_variant;ENST00000461179.2_1_1:179339175-179437601:+|nuORF;AXDND1|p.N583Vfs*2|1|0.1|ENSG00000162779|chr1:179445152-179445153|-/GTCT|frameshift_variant;ENSG00000162779|ENST00000367618|AXDND1	nc|ENSG00000162779|Q5T1B0-2|AXDND1	nc|ENSG00000162779|Q5T1B0-2|AXDND1	MSMS	HCT116MG_D190212_S1	1	525.7882690429688	2	525.790184	1049.56581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.707	1	32.707	32.207	33.207	0								0	0	0	0.74658	1	12079	12079		26.884	1.4843	1				22382	238	14076	14156	21521	21521					0.04301466542756316
NLAEKPKTV	9	Unmodified	_NLAEKPKTV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S2	2	500.295654296875	2	500.295299	998.576045	0.41905	0.00020965	0.34536	0.00017278	0.76442	0.00038243	500.2953780592361	20.852	0.20795	20.469	20.338	20.546	-0.38288					8	3	3	0	0	0	0.0068642	1	7330	7330		121.35	52.241	1	23244000			22383	3433	14077	14157	21522	21522					0.07670029477321805
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	ENSG00000100994|ENST00000216962|PYGB;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1015.5527954101562	1	1015.55308	1014.54581	0.14991	0.00015224	0.014538	1.4764E-05	0.16445	0.00016701	1015.5527602678192	38.097	0.2077	38.097	37.968	38.175	0					5	3	2	0	0	0	1.4455E-05	1	14281	14281		214.05	121.4	1	15530000			22384	1748;1715	14078	14158	21523	21523					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	ENSG00000100994|ENST00000216962|PYGB;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	508.29193115234375	2	508.28018	1014.54581	-0.38106	-0.00019368	0.25155	0.00012786	-0.12951	-6.5829E-05	508.2802312147273	38.098	0.36388	38.098	37.916	38.279	0					18	6	4	0	0	0	0.0046822	1	14287	14287		140.63	61.037	1	171910000			22385	1748;1715	14078	14158	21524	21524					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	ENSG00000100994|ENST00000216962|PYGB;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1015.5541381835938	1	1015.55308	1014.54581	0.53339	0.00054169	-0.15674	-0.00015918	0.37665	0.00038251	1015.553178280641	38.13	0.25842	38.037	37.908	38.167	-0.09301					10	4	3	0	0	0	9.4614E-05	1	14329	14329		200.32	114.68	1	81335000			22386	1748;1715	14078	14158	21525	21525					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	ENSG00000100994|ENST00000216962|PYGB;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	508.28018	1014.54581	0.19319	9.8195E-05	0.15195	7.7233E-05	0.34514	0.00017543	508.28022940991866	38.13	0.57156	38.037	37.857	38.428	-0.09301	-0.029553	-3.9395E-05	NaN	140.63	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	747190000			22387	1748;1715	14078	14158							0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	ENSG00000100994|ENST00000216962|PYGB;PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	508.28018	1014.54581	0.19249	9.784E-05	0.1821	9.2559E-05	0.37459	0.0001904	508.28022046388764	38.367	0.51918	38.065	37.885	38.404	-0.30137	-0.0015822	-8.7448E-06	NaN	140.63	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110050000			22388	1748;1715	14078	14158							0.03911670812135526
NLAEVVERV	9	Unmodified	_NLAEVVERV_					0	0	0		FBXO22|p.T35I|1|0.15|ENSG00000167196|chr15:75904067-75904067|C/T|missense_variant;nc|ENSG00000167196|Q8NEZ5-2|FBXO22;ENST00000565131.5_1_15:76196304-76197948:+|nuORF;nc|ENSG00000167196|Q8NEZ5-3|FBXO22;ENSG00000167196|ENST00000308275|FBXO22	FBXO22|p.T35I|1|0.15|ENSG00000167196|chr15:75904067-75904067|C/T|missense_variant	FBXO22|p.T35I|1|0.15|ENSG00000167196|chr15:75904067-75904067|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	514.79052734375	2	514.790381	1027.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.531	1	46.42	45.92	46.92	-0.11121								0	0	0	0.038892	1	17726	17726		74.2	28.5	1				22389	4909	14079	14159	21526	21526					0.05352841471949432
NLAGVYSEV	9	Unmodified	_NLAGVYSEV_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-MSMS	HCT116MG_D190212_S1	1	951.4794311523438	1	951.478188	950.470912	0.70037	0.00066639	-0.1654	-0.00015738	0.53497	0.00050901	951.4783775766708	44.437	0.21259	44.437	44.304	44.516	0					7	3	3	0	0	0	0.0066233	1	16826	16826		123.45	49.028	1	12534000			22390	5841	14080	14160	21527	21527					-0.006305117191004683
NLAGVYSEV	9	Unmodified	_NLAGVYSEV_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-MSMS	HCT116MG_D190212_S2	2	951.4791259765625	1	951.478188	950.470912	0.75124	0.00071479	-0.018979	-1.8059E-05	0.73226	0.00069673	951.478360725582	44.436	0.52248	44.351	44.22	44.743	-0.084797					12	9	2	0	0	0	0.0034906	1	16899	16899		158.2	57.831	1	41577000			22391	5841	14080	14160	21528	21528					-0.006305117191004683
NLARVFWKFQN	11	Unmodified	_NLARVFWKFQN_					0	0	0		ENSG00000187764|ENST00000422704|SEMA4D	ENSG00000187764|ENST00000422704|SEMA4D	ENSG00000187764|ENST00000422704|SEMA4D	MSMS	HCT116MG_D190212_S3	3	711.8845825195312	2	711.885678	1421.7568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.199	1	41.896	41.396	42.396	-0.30352								0	0	0	0.95196	1	15713	15713		5.2969	2.0156	1				22392	5958	14081	14161	21529	21529					0.06279547854023804
NLDASQQF	8	Unmodified	_NLDASQQF_					0	0	0			REV__MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant;REV__MED12L|p.N1494Rfs*10|1|0.1|ENSG00000144893|chr3:151380219-151380220|-/GAAATAATGCATT|frameshift_variant	REV__MED12L|p.N1494Rfs*10|1|0.1|ENSG00000144893|chr3:151380219-151380220|-/GAAATAATGCATT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	462.1466369628906	2	461.716882	921.41921	0.039712	1.8336E-05	0.43434	0.00020054	0.47405	0.00021888	461.7169372325432	19.49	1.4979	19.303	18.401	19.899	-0.18674					62	28	3	0	0	0	0.79062	1	6760	6760		12.532	1.7076	1	9367400	+		22393	12434;17014	14082	14162	21530	21530					-0.04464255412995044
NLDCSFDMEA	10	Unmodified	_NLDCSFDMEA_					0	0	0		nc|ENSG00000132604|Q15554-4|TERF2;ENSG00000132604|ENST00000254942|TERF2	nc|ENSG00000132604|Q15554-4|TERF2	nc|ENSG00000132604|Q15554-4|TERF2	MULTI-MSMS	HCT116MG_D190212_S3	3	572.7536010742188	2	572.717907	1143.42126	0.49413	0.00028299	-3.8153	-0.0021851	-3.3212	-0.0019021	573.2178047057141	38.191	0.20733	37.889	37.781	37.989	-0.30137					5	3	2	0	0	0	0.8392	1	14101	14101		8.7454	2.5396	1	5667800			22394	3195	14083	14163	21531	21531					-0.14471330781702818
NLDDKPIP	8	Unmodified	_NLDDKPIP_					0	0	0			REV__nc|ENSG00000086102|Q12986-3|NFX1	REV__nc|ENSG00000086102|Q12986-3|NFX1	MSMS	HCT116MG_D190212_S3	3	456.2442321777344	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.983	1	36.682	36.182	37.182	-0.30113								0	0	0	0.8837	1	13684	13684		13.508	4.9146	1		+		22395	10929	14084	14164	21532	21532					0.017177921435177268
NLDDNAQRY	9	Unmodified	_NLDDNAQRY_					0	0	0		ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	MSMS	HCT116MG_D190212_S1	1	554.7677612304688	2	554.754527	1107.4945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.785	1	24.785	24.285	25.285	0								0	0	0	0.38321	1	8888	8888		34.402	0.29928	1				22396	6206	14085	14165	21533	21533					-0.05494697952576644
NLDEEKQLLY	10	Unmodified	_NLDEEKQLLY_					0	0	0		nc|ENSG00000139926|Q96NE9-2|FRMD6;ENSG00000139926|ENST00000344768|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	MULTI-MSMS	HCT116MG_D190212_S2	2	633.0594482421875	2	632.824618	1263.63468	0.43429	0.00027483	-0.38498	-0.00024363	0.04931	3.1205E-05	632.8244551662135	42.317	0.20655	42.248	42.12	42.327	-0.068199					5	3	2	0	0	0	0.28884	1	15988	15988		51.488	24.265	1	5584100			22397	3650	14086	14166	21534	21534					0.013410412611619904
NLDIERPTY	9	Unmodified	_NLDIERPTY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;nc|ENSG00000183785|Q9NY65-2|TUBA8;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;TUBA3C|p.R215H|1|0.22|ENSG00000198033|chr13:19177339-19177339|C/T|missense_variant;ENSG00000243910|ENST00000490341|TUBA4B	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S1	1	560.785400390625	2	560.785296	1119.55604	0.40381	0.00022645	0.10627	5.9596E-05	0.51008	0.00028605	560.785214185503	37.778	0.26108	37.778	37.602	37.863	0					10	4	3	0	0	0	0.15281	1	14138	14138		47.732	20.509	1	7413200			22398	1325	14087	14167	21535	21535					0.0010423374671972852
NLDIIQQEY	9	Unmodified	_NLDIIQQEY_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	568.284912109375	2	568.285128	1134.5557	0.24947	0.00014177	-0.13886	-7.8913E-05	0.11061	6.2859E-05	568.2850425781063	47.733	0.24548	47.733	47.543	47.789	0					6	4	2	0	0	0	0.012596	1	18161	18161		106.94	10.574	1	30817000			22399	2464	14088	14168	21536	21536					-0.006191859731416116
NLDKNTVGY	9	Unmodified	_NLDKNTVGY_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	HCT116MG_D190212_S1	1	512.259033203125	2	512.258914	1022.50327	0.37583	0.00019252	-0.2035	-0.00010424	0.17233	8.8277E-05	512.2587312409851	27.464	0.36208	27.464	27.282	27.644	0					17	6	4	0	0	0	4.914E-08	1	9955	9955		223.81	123.44	1	112390000			22400	853	14089	14169	21537	21537					-0.007077243161006663
NLDKNTVGY	9	Unmodified	_NLDKNTVGY_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2587280273438	2	512.258914	1022.50327	0.26151	0.00013396	-0.022014	-1.1277E-05	0.23949	0.00012268	512.2588606973143	27.867	0.46286	27.525	27.347	27.81	-0.34201					25	8	4	0	0	0	4.914E-08	1	10129	10129		223.81	124.01	1	278850000			22401	853	14089	14169	21538	21538					-0.007077243161006663
NLDKNTVGY	9	Unmodified	_NLDKNTVGY_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	HCT116MG_D190212_S2	2	1023.5105590820312	1	1023.51055	1022.50327	0.63105	0.00064589	0.16073	0.00016451	0.79178	0.0008104	1023.5104401520441	27.863	0.25647	27.521	27.398	27.655	-0.34201					9	4	3	0	0	0	4.914E-08	1	10149	10149		223.81	89.516	1	31830000			22402	853	14089	14169	21539	21539					-0.007077243161006663
NLDKNTVGY	9	Unmodified	_NLDKNTVGY_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2588500976562	2	512.258914	1022.50327	0.30616	0.00015683	0.011475	5.8781E-06	0.31763	0.00016271	512.2588258841344	27.783	0.41581	27.595	27.413	27.829	-0.18847					13	7	3	0	0	0	0.0050238	1	10032	10032		137.42	61.663	1	12808000			22403	853	14089	14169	21540	21540					-0.007077243161006663
NLDLRIRPH	9	Unmodified	_NLDLRIRPH_					0	0	0		ENSG00000183273|ENST00000327554|CCDC60	ENSG00000183273|ENST00000327554|CCDC60	ENSG00000183273|ENST00000327554|CCDC60	MULTI-MSMS	HCT116MG_D190212_S1	1	567.3304443359375	2	567.330539	1132.64652	0.32671	0.00018536	-0.62184	-0.00035279	-0.29513	-0.00016743	567.3299599554615	47.408	1.1929	47.408	46.907	48.1	0					48	23	4	0	0	0	0.71996	1	18135	18135		3.2813	2.6798	1	49971000			22404	5709	14090	14170	21541	21541					0.0855074758567298
NLDLRIRPH	9	Unmodified	_NLDLRIRPH_					0	0	0		ENSG00000183273|ENST00000327554|CCDC60	ENSG00000183273|ENST00000327554|CCDC60	ENSG00000183273|ENST00000327554|CCDC60	MULTI-SECPEP	HCT116MG_D190212_S1	1	567.330322265625	2	567.330539	1132.64652	0.17742	0.00010066	-0.71003	-0.00040282	-0.5326	-0.00030216	567.3300369620774	50.299	0.87641	50.299	49.853	50.73	0					31	16	3	0	0	0	0.22899	1	19103	19103		18.146	18.146	1	71849000			22405	5709	14090	14170	21542	21542					0.0855074758567298
NLDLRIRPH	9	Unmodified	_NLDLRIRPH_					0	0	0		ENSG00000183273|ENST00000327554|CCDC60	ENSG00000183273|ENST00000327554|CCDC60	ENSG00000183273|ENST00000327554|CCDC60	MULTI-MSMS	HCT116MG_D190212_S2	2	567.3291015625	2	567.330539	1132.64652	0.42734	0.00024245	-1.2945	-0.00073443	-0.86718	-0.00049198	567.329889596986	50.578	1.2456	50.406	50.036	51.282	-0.17191					31	23	2	0	0	0	0.45684	1	19303	19303		26.884	26.884	1	16425000			22406	5709	14090	14170	21543	21543					0.0855074758567298
NLDNPIQTV	9	Unmodified	_NLDNPIQTV_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENST00000572932.1_1_16:16374097-16382502:+|nuORF;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	HCT116MG_D190212_S2	2	1013.5254516601562	1	1013.5262	1012.51892	0.34117	0.00034578	-0.1362	-0.00013804	0.20497	0.00020774	1013.5256735641738	43.33	0.41308	43.256	43.045	43.458	-0.073376					12	7	3	0	0	0	0.0035631	1	16449	16449		173.69	48.157	1	20569000			22407	1882;1899	14091	14171	21544	21544					0.013165622009410072
NLDNPIQTV	9	Unmodified	_NLDNPIQTV_					0	0	0		nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENST00000572932.1_1_16:16374097-16382502:+|nuORF;ENSG00000103512|ENST00000287667|NOMO1;NOMO1|p.P1102Hfs*42|1|0.36|ENSG00000103512|chr16:14886838-14886838|C/-|frameshift_variant	nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1	nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1013.5262	1012.51892	0.81767	0.00082873	-0.40745	-0.00041296	0.41023	0.00041578	1013.525780051228	43.218	0.31237	43.218	43.056	43.368	0	-0.019425	-0.00012881	NaN	173.69	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11395000			22408	1882;1899	14091	14171							0.013165622009410072
NLDPAVHEV	9	Unmodified	_NLDPAVHEV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000503738.5_1_2:27851561-27855513:+|nuORF;ENST00000461249.1_1_2:27852141-27855513:+|nuORF;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	HCT116MG_D190212_S1	1	497.2536315917969	2	497.253631	992.49271	0.32414	0.00016118	-0.1183	-5.8824E-05	0.20584	0.00010236	497.25360301791045	32.56	0.20892	32.56	32.43	32.639	0					6	3	2	0	0	0	0.049545	1	12029	12029		74.929	28.908	1	8195200			22409	6236	14092	14172	21545	21545					-0.003837069705241447
NLDPAVHEV	9	Unmodified	_NLDPAVHEV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000503738.5_1_2:27851561-27855513:+|nuORF;ENST00000461249.1_1_2:27852141-27855513:+|nuORF;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	HCT116MG_D190212_S2	2	497.25341796875	2	497.253631	992.49271	0.4533	0.00022541	-0.13086	-6.5069E-05	0.32244	0.00016034	497.2535755241418	32.804	0.31087	32.592	32.377	32.688	-0.21135					10	5	3	0	0	0	0.049545	1	12165	12165		74.929	28.908	1	26520000			22410	6236	14092	14172	21546	21546					-0.003837069705241447
NLDPAVHEV	9	Unmodified	_NLDPAVHEV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000503738.5_1_2:27851561-27855513:+|nuORF;ENST00000461249.1_1_2:27852141-27855513:+|nuORF;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MSMS	HCT116MG_D190212_S3	3	497.25421142578125	2	497.253631	992.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.947	1	32.662	32.162	33.162	-0.28511								0	0	0	0.35515	1	12094	12094		36.127	10.728	1				22411	6236	14092	14172	21547	21547					-0.003837069705241447
NLDPKITEY	9	Unmodified	_NLDPKITEY_					0	0	0		ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	MSMS	HCT116MG_D190212_S2	2	546.7828369140625	2	546.782222	1091.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.22	1	37.117	36.617	37.617	-0.10318								0	0	0	0.22243	1	13944	13944		45.74	0.040262	1				22412	2644	14093	14173	21548	21548					0.007777155151643456
NLDPLTETY	9	Unmodified	_NLDPLTETY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S2	2	1065.5140380859375	1	1065.50988	1064.50261	0.76096	0.00081081	0.45782	0.00048781	1.2188	0.0012986	1065.510868441605	48.303	0.20234	48.16	48.033	48.235	-0.1437					5	3	2	0	0	0	5.7085E-05	1	18478	18478		206.75	106.95	1	43670000			22413	5287	14094	14174	21549	21549					-0.02706563755782554
NLDPLTETY	9	Unmodified	_NLDPLTETY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S3	3	1065.5115966796875	1	1065.50988	1064.50261	0.79645	0.00084863	0.54867	0.00058461	1.3451	0.0014332	1065.510383598304	48.482	0.25989	48.166	48.036	48.296	-0.31596					10	4	3	0	0	0	5.7085E-05	1	18243	18243		206.75	95.462	1	8068200			22414	5287	14094	14174	21550	21550					-0.02706563755782554
NLDPLTETY	9	Unmodified	_NLDPLTETY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2591552734375	2	533.258579	1064.50261	0.69682	0.00037158	0.61449	0.00032768	1.3113	0.00069926	533.2590719766526	48.482	0.31202	48.166	47.984	48.296	-0.31596					11	5	3	0	0	0	0.016744	1	18245	18245		99.755	21.027	1	7610100			22415	5287	14094	14174	21551	21551					-0.02706563755782554
NLDQATRVAY	10	Unmodified	_NLDQATRVAY_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MSMS	HCT116MG_D190212_S2	2	575.796142578125	2	575.796195	1149.57784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.976	1	32.765	32.265	33.265	-0.21135								0	0	0	0.75352	1	12221	12221		46.022	13.237	1				22416	2406	14095	14175	21552	21552					0.009030384952893655
NLDQATRVAY	10	Unmodified	_NLDQATRVAY_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MSMS	HCT116MG_D190212_S3	3	575.7976684570312	2	575.796195	1149.57784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.102	1	32.817	32.317	33.317	-0.28511								0	0	0	0.17914	1	12149	12149		88.364	32.187	1				22417	2406	14095	14175	21553	21553					0.009030384952893655
NLDSARFRY	9	Unmodified	_NLDSARFRY_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;ENSG00000166796|ENST00000541669|LDHC;ENSG00000111716|ENST00000350669|LDHB	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	571.2920532226562	2	571.291079	1140.56761	0.4015	0.00022937	1.4763	0.00084338	1.8778	0.0010728	571.2923377334312	33.53	0.20778	33.53	33.4	33.607	0					6	3	2	0	0	0	0.23993	1	12437	12437		39.95	5.8473	1	10866000			22418	3280	14096	14176	21554	21554					0.0029447556071318104
NLDSARFRY	9	Unmodified	_NLDSARFRY_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;ENSG00000166796|ENST00000541669|LDHC;ENSG00000111716|ENST00000350669|LDHB	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MSMS	HCT116MG_D190212_S1	1	381.1965637207031	3	381.196478	1140.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.612	1	33.612	33.112	34.112	0								0	0	0	0.55657	1	12445	12445		26.021	7.8744	1				22419	3280	14096	14176	21555	21555					0.0029447556071318104
NLDSARFRY	9	Unmodified	_NLDSARFRY_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;ENSG00000166796|ENST00000541669|LDHC;ENSG00000111716|ENST00000350669|LDHB	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	571.2911987304688	2	571.291079	1140.56761	0.55862	0.00031914	0.030817	1.7605E-05	0.58944	0.00033674	571.2908900342263	33.719	0.46672	33.526	33.276	33.742	-0.19297					13	8	3	0	0	0	0.1935	1	12536	12536		30.637	16.055	1	58767000			22420	3280	14096	14176	21556	21556					0.0029447556071318104
NLDSARFRY	9	Unmodified	_NLDSARFRY_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;ENSG00000166796|ENST00000541669|LDHC;ENSG00000111716|ENST00000350669|LDHB	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	381.1963195800781	3	381.196478	1140.56761	0.026465	1.0088E-05	-0.32231	-0.00012286	-0.29584	-0.00011277	381.1963185978031	33.753	0.31241	33.56	33.378	33.691	-0.19297					8	5	2	0	0	0	0.068828	1	12538	12538		65.474	21.615	1	24598000			22421	3280	14096	14176	21557	21557					0.0029447556071318104
NLDSARFRY	9	Unmodified	_NLDSARFRY_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000398295.3_1_2:85004811-85005102:-|nuORF;LDHA|p.E176Kfs*8|1|0.28|ENSG00000134333|chr11:18402943-18402943|G/-|frameshift_variant;LDHAL6A|p.V234Sfs*7|1|0.31|ENSG00000166800|chr11:18476484-18476485|-/A|frameshift_variant;nc|ENSG00000134333|P00338-5|LDHA;LDHA|p.W227Tfs*16|1|0.06|ENSG00000134333|chr11:18403779-18403780|-/AC|frameshift_variant;nc|ENSG00000134333|P00338-2|LDHA;ENSG00000166800|ENST00000280706|LDHAL6A;ENSG00000166796|ENST00000541669|LDHC;ENSG00000111716|ENST00000350669|LDHB	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	571.291079	1140.56761	0.55862	0.00031914	0.030817	1.7605E-05	0.58944	0.00033674	571.2908900342263	33.719	0.46672	33.526	33.276	33.742	-0.19297	-0.0018366	-7.516E-05	NaN	30.637	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58767000			22422	3280	14096	14176							0.0029447556071318104
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-7|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-7|UEVLD	MSMS	HCT116MG_D190212_S1	1	568.78857421875	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.322	1	33.322	32.822	33.822	0								0	0	0	1.6777E-08	1	12328	12328		165.72	94.012	1				22423	4101	14097	14177	21558	21558					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-7|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-7|UEVLD	MULTI-MSMS	HCT116MG_D190212_S2	2	568.78857421875	2	568.78837	1135.56219	0.7523	0.0004279	-0.031383	-1.785E-05	0.72091	0.00041005	568.7882568434366	33.443	0.35944	33.25	33.071	33.43	-0.19297					16	6	3	0	0	0	0.0034381	1	12410	12410		160.69	91.351	1	265880000			22424	4101	14097	14177	21559	21559					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-7|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-7|UEVLD	MULTI-MSMS	HCT116MG_D190212_S3	3	568.7886352539062	2	568.78837	1135.56219	0.45438	0.00025845	0.10971	6.2403E-05	0.56409	0.00032085	568.7883760099469	33.639	0.36275	33.349	33.2	33.563	-0.29013					11	6	2	0	0	0	0.0019609	1	12368	12368		187.3	97.896	1	27299000			22425	4101	14097	14177	21560	21560					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-7|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-7|UEVLD	MULTI-MSMS	HCT116MG_D190212_S4	4	568.7896118164062	2	568.78837	1135.56219	0.72857	0.0004144	0.26767	0.00015225	0.99625	0.00056665	568.7884899025215	33.721	0.24439	33.337	33.169	33.413	-0.38426					7	4	2	0	0	0	0.0035183	1	12289	12289		157.8	84.599	1	8301600			22426	4101	14097	14177	21561	21561					-0.00017248021754312504
NLEALKQKRFP	11	Unmodified	_NLEALKQKRFP_					0	0	0		nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10	nc|ENSG00000119979|Q8TCE6-2|DENND10	nc|ENSG00000119979|Q8TCE6-2|DENND10	MSMS	HCT116MG_D190212_S2	2	672.3934936523438	2	672.393336	1342.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.2	1	44.122	43.622	44.622	-0.078373								0	0	0	0.93456	1	16781	16781		14.405	1.3629	1				22427	2677	14098	14178	21562	21562					0.11444414651214174
NLEGDYYCACP	11	Unmodified	_NLEGDYYCACP_					0	0	0		JAG2|p.G741Afs*21|5|0.27|ENSG00000184916|chr14:105148144-105148144|G/-|frameshift_variant;nc|ENSG00000184916|Q9Y219-2|JAG2;ENSG00000184916|ENST00000331782|JAG2	JAG2|p.G741Afs*21|5|0.27|ENSG00000184916|chr14:105148144-105148144|G/-|frameshift_variant	JAG2|p.G741Afs*21|5|0.27|ENSG00000184916|chr14:105148144-105148144|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	624.2368774414062	2	624.239006	1246.46346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.818	1	23.559	23.059	24.059	-0.25816								0	0	0	0.94755	1	8359	8359		7.609	1.4032	1				22428	5789	14099	14179	21563	21563					-0.14991355373331317
NLEQSYMPPD	10	Unmodified	_NLEQSYMPPD_					0	0	0		nc|ENSG00000198001|Q9NWZ3-2|IRAK4;ENSG00000198001|ENST00000613694|IRAK4	nc|ENSG00000198001|Q9NWZ3-2|IRAK4	nc|ENSG00000198001|Q9NWZ3-2|IRAK4	MULTI-MSMS	HCT116MG_D190212_S2	2	597.5979614257812	2	597.260796	1192.50704	0.831	0.00049632	-1.4635	-0.00087409	-0.6325	-0.00037777	597.2597386858093	40.501	0.36172	40.431	40.209	40.571	-0.069626					9	6	2	0	0	0	0.78781	1	15236	15236		13.042	0	1	12296000			22429	6195	14100	14180	21564	21564					-0.08151422604555592
NLESSNSKY	9	Unmodified	_NLESSNSKY_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	521.2461547851562	2	521.246003	1040.47745	0.4702	0.00024509	-0.048746	-2.5409E-05	0.42145	0.00021968	521.2459120328605	22.462	0.20726	22.077	21.947	22.154	-0.3852					6	3	2	0	0	0	0.27446	1	7983	7983		33.445	6.5612	1	21834000			22430	806	14101	14181	21565	21565					-0.04116618558373375
NLESSNSKY	9	Unmodified	_NLESSNSKY_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	521.24609375	2	521.246003	1040.47745	0.30011	0.00015643	-0.68123	-0.00035509	-0.38113	-0.00019866	521.24585980562	21.874	0.26057	21.875	21.729	21.99	0.00074577					6	4	2	0	0	0	0.20983	1	7665	7665		40.239	4.1122	1	3778200			22431	806	14101	14181	21566	21566					-0.04116618558373375
NLESSNSKY	9	Unmodified	_NLESSNSKY_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;CDC27|p.P360Lfs*7|1|0.33|ENSG00000004897|chr17:47143976-47143977|-/AATTTAAA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;CDC27|p.I404Sfs*15|1|0.44|ENSG00000004897|chr17:47142397-47142397|T/-|frameshift_variant	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	521.246003	1040.47745	0.40007	0.00020854	1.0424	0.00054337	1.4425	0.0007519	521.2465079637789	22	0.20881	22	21.854	22.063	0	0.015952	0.0011565	NaN	40.239	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2911700			22432	806	14101	14181							-0.04116618558373375
NLFHDGREHSV	11	Unmodified	_NLFHDGREHSV_					0	0	0		LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.A2665Cfs*4|1|0.15|ENSG00000196569|chr6:129491988-129491989|-/G|frameshift_variant	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	437.5462341308594	3	437.546059	1309.61635	0.37472	0.00016396	-0.47812	-0.0002092	-0.1034	-4.5243E-05	437.54588187257764	25.484	0.20802	25.204	25.11	25.318	-0.27958					5	3	2	0	0	0	0.74191	1	9054	9054		5.5233	1.6774	1	3455300			22433	6086	14102	14182	21567	21567					-0.026076558702015973
NLFHLDDPL	9	Unmodified	_NLFHLDDPL_					0	0	0			REV__nc|ENSG00000138658|Q86YA3-4|ZGRF1	REV__nc|ENSG00000138658|Q86YA3-4|ZGRF1	MULTI-SECPEP	HCT116MG_D190212_S2	2	542.2486572265625	2	542.277106	1082.53966	0.48559	0.00026332	-0.060884	-3.3016E-05	0.42471	0.00023031	542.2761531292144	51.463	0.30912	51.281	51.168	51.477	-0.18207					10	5	3	0	0	0	0.25004	1	19743	19743		6.7232	0	1	7542000	+		22434	12235	14103	14183	21568	21568					0.0016915258061089844
NLFHRLYALDL	11	Unmodified	_NLFHRLYALDL_					0	0	0			REV__COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	REV__COL15A1|p.G1040Efs*113|1|0.1|ENSG00000204291|chr9:99055293-99055293|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	687.5131225585938	2	687.880062	1373.74557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.897	1	49.734	49.234	50.234	-0.16369								0	0	0	0.94538	1	19110	19110		8.7454	3.0136	1		+		22435	10224	14104	14184	21569	21569					0.07364725759907742
NLFKLLIM	8	Unmodified	_NLFKLLIM_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-MSMS	HCT116MG_D190212_S4	4	496.3040466308594	2	496.304081	990.59361	0.47035	0.00023344	-0.65797	-0.00032655	-0.18761	-9.3113E-05	496.30359447886	54.101	0.72891	53.772	53.353	54.082	-0.32923					21	13	2	0	0	0	0.81821	1	20301	20301		9.3474	4.1168	1	3248800	+		22436	17297	14105	14185	21570	21570					0.09793653478652686
NLFKRYRKRIY	11	Unmodified	_NLFKRYRKRIY_					0	0	0			REV__nc|ENSG00000014257|P15309-2|ACP3	REV__nc|ENSG00000014257|P15309-2|ACP3	MSMS	HCT116MG_D190212_S3	3	519.645263671875	3	519.643927	1555.90995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.767	1	37.465	36.965	37.965	-0.30137								0	0	0	0.96192	1	13979	13979		0.08335	0.08335	1		+		22437	17066	14106	14186	21571	21571					0.15423162970500925
NLFKRYRKRIY	11	Unmodified	_NLFKRYRKRIY_					0	0	0			REV__nc|ENSG00000014257|P15309-2|ACP3	REV__nc|ENSG00000014257|P15309-2|ACP3	MSMS	HCT116MG_D190212_S4	4	519.6455688476562	3	519.643927	1555.90995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.707	1	37.323	36.823	37.823	-0.3839								0	0	0	0.96192	1	13831	13831		0.08335	0.08335	1		+		22438	17066	14106	14186	21572	21572					0.15423162970500925
NLFQKLSPHIV	11	Unmodified	_NLFQKLSPHIV_					0	0	0			REV__ENSG00000125863|ENST00000347364|MKKS	REV__ENSG00000125863|ENST00000347364|MKKS	MSMS	HCT116MG_D190212_S1	1	648.3795166015625	2	648.377155	1294.73976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.022	1	49.022	48.522	49.522	0								0	0	0	0.95196	1	18669	18669		5.2969	2.3016	1		+		22439	11821	14107	14187	21573	21573					0.10417627248239114
NLGEALDFRE	10	Unmodified	_NLGEALDFRE_					0	0	0		ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	MULTI-SECPEP	HCT116MG_D190212_S3	3	582.32470703125	2	582.288202	1162.56185	0.27721	0.00016142	0.42852	0.00024952	0.70573	0.00041094	582.288500679371	17.947	1.1451	18.023	17.425	18.57	0.076334					36	21	2	0	0	0	0.2916	1	6194	6194		12.241	4.0851	1	5838200			22440	2560	14108	14188	21574	21574					-0.01292667741608966
NLGENYHLTRR	11	Unmodified	_NLGENYHLTRR_					0	0	0			REV__ENST00000420261.1_1_6:32846995-32847538:-|nuORF	REV__ENST00000420261.1_1_6:32846995-32847538:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	687.3319702148438	2	686.857649	1371.70075	0.87267	0.0005994	-0.33463	-0.00022984	0.53804	0.00036956	686.8573933664165	22.454	0.6771	22.435	22.022	22.699	-0.018871					23	12	2	0	0	0	0.36397	1	7898	7898		2.7352	0	1	6141400	+		22441	15515	14109	14189	21575	21575					0.02976294946552116
NLGNNYSDEP	10	Unmodified	_NLGNNYSDEP_					0	0	0		ENST00000455586.6_1_X:65242107-65242404:-|nuORF;nc|ENSG00000155659|Q9Y279-3|VSIG4;ENSG00000155659|ENST00000374737|VSIG4	ENST00000455586.6_1_X:65242107-65242404:-|nuORF	ENST00000455586.6_1_X:65242107-65242404:-|nuORF	MSMS	HCT116MG_D190212_S4	4	561.7386474609375	2	561.738542	1121.46253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.723	1	16.556	16.056	17.056	-0.16664								0	0	0	0.90023	1	5495	5495		15.847	3.3156	1				22442	4259	14110	14190	21576	21576					-0.09334110426379993
NLGVFEEYR	9	Unmodified	_NLGVFEEYR_					0	0	0			REV__ENST00000442740.1_2_3:48475374-48481489:-|nuORF	REV__ENST00000442740.1_2_3:48475374-48481489:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	564.7697143554688	2	563.780013	1125.54547	0.24477	0.000138	0.28696	0.00016178	0.53174	0.00029978	563.780102702868	26.719	0.88349	26.418	25.922	26.805	-0.30087					23	16	2	0	0	0	0.60612	1	9339	9339		10.824	2.0785	1	2271600	+		22443	12971	14111	14191	21577	21577					-0.012277489077177961
NLHTVSVVC	9	Unmodified	_NLHTVSVVC_					0	0	0			REV__ENST00000354852.5_1_11:5653730-5653790:+|nuORF	REV__ENST00000354852.5_1_11:5653730-5653790:+|nuORF	MSMS	HCT116MG_D190212_S2	2	486.2542419433594	2	486.252577	970.490601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.341	1	37.238	36.738	37.738	-0.10318								0	0	0	0.76834	1	13993	13993		6.7232	1.4925	1		+		22444	15033	14112	14192	21578	21578					0.004175410200218721
NLIEVNEEV	9	Unmodified	_NLIEVNEEV_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	HCT116MG_D190212_S2	2	1058.5374755859375	1	1058.53643	1057.52915	0.58442	0.00061863	-0.45414	-0.00048072	0.13028	0.00013791	1058.5359065726432	45.715	0.25637	45.614	45.505	45.761	-0.1014					7	4	2	0	0	0	0.055677	1	17428	17428		71.922	1.5903	1	26157000			22445	2776	14113	14193	21579	21579					0.002691251355145141
NLIGKIENV	9	Unmodified	_NLIGKIENV_					0	0	0		ENST00000520446.5_1_8:133637625-133687739:-|nuORF;nc|ENSG00000129295|Q86X45-2|DNAAF11;ENSG00000129295|ENST00000620350|DNAAF11	ENST00000520446.5_1_8:133637625-133687739:-|nuORF	ENST00000520446.5_1_8:133637625-133687739:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	500.7585144042969	2	500.295299	998.576045	0.54944	0.00027488	0.46723	0.00023375	1.0167	0.00050864	500.29512329975125	44.501	0.36755	44.416	44.22	44.588	-0.084801					14	6	4	0	0	0	0.16566	1	16922	16922		38.176	0	1	20240000			22446	3027	14114	14194	21580	21580					0.07670029477321805
NLIKKKNIKYI	11	Unmodified	_NLIKKKNIKYI_					0	0	0		tr|U7SMU1|U7SMU1_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01824PE=4SV=1	tr|U7SMU1|U7SMU1_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01824PE=4SV=1	tr|U7SMU1|U7SMU1_FUSNUHelix-turn-helixdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01824PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	687.946533203125	2	687.945205	1373.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.138	1	46.824	46.324	47.324	-0.31405								0	0	0	0.95581	1	17694	17694		3.2813	0	1				22447	18354	14115	14195	21581	21581					0.20387321758880717
NLIKKRKS	8	Unmodified	_NLIKKRKS_					0	0	0		ENST00000609924.1_1_18:3246797-3247004:-|nuORF	ENST00000609924.1_1_18:3246797-3247004:-|nuORF	ENST00000609924.1_1_18:3246797-3247004:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	493.8268127441406	2	493.827101	985.639649	0.25203	0.00012446	-0.46596	-0.00023011	-0.21394	-0.00010565	493.82672983463925	58.191	0.37858	58.191	58.085	58.463	0					12	7	3	0	0	0	0.86858	1	22432	22432		2.0598	0	1	66870000			22448	9134	14116	14196	21582	21582					0.14625434705078533
NLILMLYK	8	Unmodified	_NLILMLYK_					0	0	0			REV__ROS1|p.N1247Mfs*14|1|0.11|ENSG00000047936|chr6:117357918-117357918|T/-|frameshift_variant	REV__ROS1|p.N1247Mfs*14|1|0.11|ENSG00000047936|chr6:117357918-117357918|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	504.3019714355469	2	504.301539	1006.58852	0.25587	0.00012903	0.29572	0.00014913	0.55159	0.00027817	504.3017092560471	44.454	0.73688	44.454	43.936	44.673	0					17	13	2	0	0	0	0.85329	1	16861	16861		4.756	0	1	6376300	+		22449	17480	14117	14197	21583	21583					0.08549349616021118
NLIVLHLRKV	10	Unmodified	_NLIVLHLRKV_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MSMS	HCT116MG_D190212_S2	2	402.2694091796875	3	402.267797	1203.78156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.312	1	35.17	34.67	35.67	-0.14245								0	0	0	0.97045	1	13167	13167		0.15932	0	1				22450	1329	14118	14198	21584	21584					0.18782227727410827
NLKEEIFNL	9	Unmodified	_NLKEEIFNL_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	560.3060302734375	2	560.305864	1118.59717	0.41147	0.00023055	0.023292	1.3051E-05	0.43476	0.0002436	560.3058136946324	52.254	0.30955	52.254	52.073	52.383	0					12	5	3	0	0	0	0.0035147	1	19988	19988		168.66	16.246	1	76887000	+		22451	17960	14119	14199	21585	21585					0.04261994786179457
NLKEEIFNL	9	Unmodified	_NLKEEIFNL_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	560.3062744140625	2	560.305864	1118.59717	0.54161	0.00030347	-0.053512	-2.9983E-05	0.4881	0.00027348	560.3057966383042	52.457	0.5167	52.27	52.038	52.555	-0.18725					29	9	4	0	0	0	0.0035147	1	20137	20137		168.66	16.246	1	133210000	+		22452	17960	14119	14199	21586	21586					0.04261994786179457
NLKEEIFNL	9	Unmodified	_NLKEEIFNL_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	1119.605712890625	1	1119.60445	1118.59717	0.70358	0.00078773	0.18135	0.00020304	0.88493	0.00099077	1119.6043423595122	52.406	0.20508	52.219	52.142	52.347	-0.18725					5	3	2	0	0	0	0.023938	1	20170	20170		92.491	0	1	9111000	+		22453	17960	14119	14199	21587	21587					0.04261994786179457
NLKEEIFNL	9	Unmodified	_NLKEEIFNL_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	560.305864	1118.59717	0.41147	0.00023055	0.023292	1.3051E-05	0.43476	0.0002436	560.3058136946324	52.254	0.30955	52.254	52.073	52.383	0	-0.0078631	3.9648E-05	NaN	168.66	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76887000	+		22454	17960	14119	14199							0.04261994786179457
NLKEKLEYKKM	11	Unmodified	_NLKEKLEYKKM_					0	0	0		tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1	tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1	tr|U7T3B8|U7T3B8_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00206PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	712.4026489257812	2	712.402512	1422.79047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.56	1	49.397	48.897	49.897	-0.16369								0	0	0	0.95636	1	18972	18972		2.9952	0	1				22455	18590	14120	14200	21588	21588					0.09598788510879785
NLKKKILRFR	10	Unmodified	_NLKKKILRFR_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MSMS	HCT116MG_D190212_S3	3	658.437744140625	2	658.437881	1314.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.458	1	50.144	49.644	50.644	-0.314								0	0	0	0.95507	1	19028	19028		3.5965	0.60125	1				22456	4784	14121	14201	21589	21589					0.21637294401398321
NLKLIIPWKNL	11	Unmodified	_NLKLIIPWKNL_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant;VPS13A|p.M1697Cfs*13|1|0.07|ENSG00000197969|chr9:77318363-77318363|A/-|frameshift_variant;VPS13A|p.K1113Rfs*30|1|0.13|ENSG00000197969|chr9:77283645-77283645|A/-|frameshift_variant;VPS13A|p.T392Pfs*7|2|0.22|ENSG00000197969|chr9:77225933-77225933|A/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MSMS	HCT116MG_D190212_S2	2	676.4241943359375	2	676.426648	1350.83874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.142	1	48.009	47.509	48.509	-0.13281								0	0	0	0.95196	1	18384	18384		5.2969	0	1				22457	9604	14122	14202	21590	21590					0.17735650213126064
NLKPALLLM	9	Unmodified	_NLKPALLLM_					0	0	0			REV__nc|ENSG00000142186|Q96KG9-3|SCYL1	REV__nc|ENSG00000142186|Q96KG9-3|SCYL1	MSMS	HCT116MG_D190212_S4	4	506.8160400390625	2	506.814813	1011.61507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.819	1	52.479	51.979	52.979	-0.34023								0	0	0	0.7689	1	19702	19702		4.756	0.42677	1		+		22458	12348	14123	14203	21591	21591					0.10973038507358979
NLKRHNELDKL	11	Unmodified	_NLKRHNELDKL_					0	0	0			REV__ENST00000358748.1_1_9:132906252-132906492:-|nuORF	REV__ENST00000358748.1_1_9:132906252-132906492:-|nuORF	MSMS	HCT116MG_D190212_S1	1	690.3917846679688	2	690.391325	1378.7681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.595	1	49.595	49.095	50.095	0								0	0	0	0.95273	1	18902	18902		4.897	1.3005	1		+		22459	15064	14124	14204	21592	21592					0.09386325157515785
NLKYVKLLKIL	11	Unmodified	_NLKYVKLLKIL_					0	0	0		tr|U7SM27|U7SM27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02027PE=4SV=1	tr|U7SM27|U7SM27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02027PE=4SV=1	tr|U7SM27|U7SM27_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02027PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	672.9507446289062	2	672.952498	1343.89044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.16	1	18.16	17.66	18.66	0								0	0	0	0.95954	1	6226	6226		1.3295	0.9789	1				22460	18344	14125	14205	21593	21593					0.23225393907046055
NLLADKLLPP	10	Unmodified	_NLLADKLLPP_					0	0	0			REV__nc|ENSG00000122787|P51857-3|AKR1D1	REV__nc|ENSG00000122787|P51857-3|AKR1D1	MSMS	HCT116MG_D190212_S3	3	547.3330688476562	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.343	1	53.04	52.54	53.54	-0.30305								0	0	0	0.94107	1	20187	20187		6.7232	0.51738	1		+		22461	11747	14126	14206	21594	21594					0.11167462062576305
NLLDAHQNY	9	Unmodified	_NLLDAHQNY_					0	0	0		DROSHA|p.E310Sfs*42|1|0.42|ENSG00000113360|chr5:31521143-31521143|T/-|frameshift_variant	DROSHA|p.E310Sfs*42|1|0.42|ENSG00000113360|chr5:31521143-31521143|T/-|frameshift_variant	DROSHA|p.E310Sfs*42|1|0.42|ENSG00000113360|chr5:31521143-31521143|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	544.260986328125	2	544.261988	1086.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.997	1	24.997	24.497	25.497	0								0	0	0	0.59795	1	8973	8973		24.021	3.5669	1				22462	730	14127	14207	21595	21595					-0.030372060845593296
NLLFYLRYWHT	11	Unmodified	_NLLFYLRYWHT_					0	0	0		ENST00000546088.5_1_11:93466523-93467809:-|nuORF;ENST00000526015.5_1_11:93466526-93466622:-|nuORF	ENST00000546088.5_1_11:93466523-93467809:-|nuORF	ENST00000546088.5_1_11:93466523-93467809:-|nuORF	MSMS	HCT116MG_D190212_S2	2	763.4014892578125	2	763.401161	1524.78777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.439	1	50.267	49.767	50.767	-0.1719								0	0	0	0.95954	1	19331	19331		1.3295	0	1				22463	8584	14128	14208	21596	21596					0.04636701168260515
NLLKLIAEV	9	Unmodified	_NLLKLIAEV_					0	0	0		SPC25|p.K79N|1|0.03|ENSG00000152253|chr2:168877347-168877347|C/A|missense_variant;ENST00000479309.6_1_2:169690730-169745796:-|nuORF;ENSG00000152253|ENST00000282074|SPC25	SPC25|p.K79N|1|0.03|ENSG00000152253|chr2:168877347-168877347|C/A|missense_variant	SPC25|p.K79N|1|0.03|ENSG00000152253|chr2:168877347-168877347|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	506.8237609863281	2	506.823692	1011.63283	0.49225	0.00024948	-0.29631	-0.00015018	0.19593	9.9303E-05	506.8234623627558	57.256	0.15588	57.077	56.999	57.155	-0.17904					4	2	2	0	0	0	0.11363	1	22128	22128		55.503	20.571	1	33414000			22464	4144	14129	14209	21597	21597					0.12748077033859317
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	HCT116MG_D190212_S1	1	523.8397827148438	2	523.839677	1045.6648	0.18992	9.9485E-05	0.22302	0.00011682	0.41293	0.00021631	523.8397055471116	48.437	0.56652	48.437	48.048	48.614	0					17	10	2	0	0	0	0.057285	1	18406	18406		71.134	36.732	1	19996000			22465	6419;5076	14130	14210	21598	21598					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	HCT116MG_D190212_S2	2	523.8388061523438	2	523.839677	1045.6648	0.55611	0.00029131	-0.44316	-0.00023214	0.11295	5.9168E-05	523.8392072338677	48.507	0.40587	48.363	48.134	48.54	-0.1437					18	7	3	0	0	0	0.057285	1	18516	18516		71.134	38.828	1	116130000			22466	6419;5076	14130	14210	21599	21599					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	HCT116MG_D190212_S3	3	524.341064453125	2	523.839677	1045.6648	0.68985	0.00036137	-0.33237	-0.00017411	0.35749	0.00018727	523.839431189413	48.673	0.46434	48.357	48.088	48.552	-0.31596					13	8	2	0	0	0	0.071351	1	18317	18317		64.236	42.49	1	9813400			22467	6419;5076	14130	14210	21600	21600					0.14379489507655308
NLLQLVISGPV	11	Unmodified	_NLLQLVISGPV_					0	0	0		nc|ENSG00000146576|Q96N11-2|INTS15;ENSG00000146576|ENST00000344417|INTS15	nc|ENSG00000146576|Q96N11-2|INTS15	nc|ENSG00000146576|Q96N11-2|INTS15	MSMS	HCT116MG_D190212_S2	2	576.8551635742188	2	576.852981	1151.69141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.002	1	33.827	33.327	34.327	-0.17512								0	0	0	0.94538	1	12636	12636		8.7454	3.0136	1				22468	3954	14131	14211	21601	21601					0.12163133608305543
NLMEIVKKL	9	Unmodified	_NLMEIVKKL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MSMS	HCT116MG_D190212_S1	1	544.330810546875	2	544.330827	1086.6471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.411	1	53.411	52.911	53.911	0								0	0	0	0.29838	1	20454	20454		40.239	19.786	1				22469	1147	14132	14212	21602	21602					0.10724406190502123
NLMEIVKKL	9	Unmodified	_NLMEIVKKL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MSMS	HCT116MG_D190212_S2	2	544.3308715820312	2	544.330827	1086.6471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.713	1	53.524	53.024	54.024	-0.1894								0	0	0	0.76655	1	20662	20662		13.042	0	1				22470	1147	14132	14212	21603	21603					0.10724406190502123
NLMEQPIKV	9	Oxidation (M)	_NLM(Oxidation (M))EQPIKV_		NLM(1)EQPIKV		NLM(150)EQPIKV	0	0	1		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S1	1	544.2949829101562	2	544.294442	1086.57433	0.6166	0.00033561	-0.26776	-0.00014574	0.34884	0.00018987	544.2943665797176	36.019	0.47208	36.019	35.785	36.257	0					19	8	3	0	0	0	0.0041644	1	13398	13398		148.27	90.546	1	36521000			22471	5303	14133	14213	21604	21604		115			0.03450652397077647
NLMEQPIKV	9	Oxidation (M)	_NLM(Oxidation (M))EQPIKV_		NLM(1)EQPIKV		NLM(150)EQPIKV	0	0	1		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	544.2948608398438	2	544.294442	1086.57433	0.83173	0.00045271	-0.38944	-0.00021197	0.44229	0.00024074	544.2941654362489	36.077	0.5164	35.949	35.658	36.174	-0.12799					21	9	4	0	0	0	0.0041644	1	13481	13481		148.27	90.546	1	62932000			22472	5303	14133	14213	21605	21605		115			0.03450652397077647
NLMEQPIKV	9	Oxidation (M)	_NLM(Oxidation (M))EQPIKV_		NLM(1)EQPIKV		NLM(120)EQPIKV	0	0	1		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S3	3	544.295166015625	2	544.294442	1086.57433	0.10339	5.6276E-05	0.54766	0.00029809	0.65105	0.00035436	544.295027454653	36.216	0.31194	35.915	35.781	36.093	-0.30042					10	5	3	0	0	0	0.0082095	1	13403	13403		117.76	55.188	1	5677000			22473	5303	14133	14213	21606	21606		115			0.03450652397077647
NLMEQPIKV	9	Oxidation (M)	_NLM(Oxidation (M))EQPIKV_		NLM(1)EQPIKV		NLM(48)EQPIKV	0	0	1		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S4	4	544.2957763671875	2	544.294442	1086.57433	0.6298	0.0003428	0.79354	0.00043192	1.4233	0.00077472	544.2950199066198	36.395	0.2559	36.009	35.818	36.074	-0.38558					6	4	2	0	0	0	0.15273	1	13337	13337		47.749	13.347	1	2007600			22474	5303	14133	14213	21607	21607		115			0.03450652397077647
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S1	1	536.2969360351562	2	536.296985	1070.57942	0.35612	0.00019099	0.19206	0.000103	0.54819	0.00029399	536.297039814477	43.342	0.36452	43.342	43.108	43.472	0					22	6	5	0	0	0	0.0034381	1	16355	16355		160.69	106.86	1	200920000			22475	5303	14133	14214	21608	21608					0.04694956259686478
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S1	1	1071.587646484375	1	1071.58669	1070.57942	0.63018	0.00067529	0.065031	6.9687E-05	0.69521	0.00074497	1071.5871147543492	43.342	0.20787	43.342	43.212	43.42	0					5	3	2	0	0	0	0.0064416	1	16397	16397		125.04	83.082	1	10545000			22476	5303	14133	14214	21609	21609					0.04694956259686478
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	536.2970581054688	2	536.296985	1070.57942	0.14097	7.56E-05	0.34333	0.00018413	0.4843	0.00025973	536.2970778732198	43.351	0.61858	43.278	43.045	43.664	-0.073372					29	11	4	0	0	0	0.0035631	2	16418	16418;16453		173.69	119.85	1	510590000			22477	5303	14133	14214	21610;21611	21610					0.04694956259686478
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	1071.5877685546875	1	1071.58669	1070.57942	0.13807	0.00014795	0.37544	0.00040232	0.51351	0.00055027	1071.5869721131787	43.35	0.3099	43.277	43.097	43.407	-0.073376					11	5	3	0	0	0	2.97E-11	1	16440	16440		249.55	163.91	1	35947000			22478	5303	14133	14214	21612	21612					0.04694956259686478
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S3	3	536.297119140625	2	536.296985	1070.57942	0.5242	0.00028113	-0.13926	-7.4686E-05	0.38494	0.00020644	536.2969005945794	43.576	0.36493	43.27	43.136	43.5	-0.30616					14	6	3	0	0	0	0.0096585	1	16286	16286		114.19	60.354	1	26418000			22479	5303	14133	14214	21613	21613					0.04694956259686478
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S4	4	536.29638671875	2	536.296985	1070.57942	0.40994	0.00021985	-0.14996	-8.0425E-05	0.25997	0.00013942	536.2966423074548	43.712	0.20021	43.338	43.215	43.415	-0.37433					6	3	2	0	0	0	0.05892	1	16087	16087		70.332	35.93	1	3576800			22480	5303	14133	14214	21614	21614					0.04694956259686478
NLNEHNHHL	9	Unmodified	_NLNEHNHHL_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-MSMS	HCT116MG_D190212_S1	1	564.27099609375	2	564.270678	1126.5268	0.57545	0.00032471	-0.030336	-1.7118E-05	0.54511	0.00030759	564.2704438062708	17.646	0.20839	17.646	17.516	17.724	0					7	3	3	0	0	0	0.066823	1	6043	6043		66.457	35.188	1	7387500			22481	5357	14134	14215	21615	21615					-0.03139865758907945
NLNEHNHHL	9	Unmodified	_NLNEHNHHL_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MSMS	HCT116MG_D190212_S1	1	376.51611328125	3	376.516211	1126.5268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.71	1	17.71	17.21	18.21	0								0	0	0	0.76669	1	6044	6044		12.241	0.74595	1				22482	5357	14134	14215	21616	21616					-0.03139865758907945
NLNEHNHHL	9	Unmodified	_NLNEHNHHL_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	376.5162048339844	3	376.516211	1126.5268	-0.58529	-0.00022037	0.53241	0.00020046	-0.052882	-1.9911E-05	376.5163904554866	18.502	0.2091	18.139	18.008	18.217	-0.36325					7	3	3	0	0	0	0.071351	1	6369	6369		57.722	40.279	1	16095000			22483	5357	14134	14215	21617	21617					-0.03139865758907945
NLNEHNHHL	9	Unmodified	_NLNEHNHHL_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MSMS	HCT116MG_D190212_S2	2	564.270751953125	2	564.270678	1126.5268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.51	1	18.147	17.647	18.647	-0.36325								0	0	0	0.0001246	1	6365	6365		133.05	75.581	1				22484	5357	14134	14215	21618	21618					-0.03139865758907945
NLNSIVPSVS	10	Unmodified	_NLNSIVPSVS_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	HCT116MG_D190212_S1	1	516.706787109375	2	515.282389	1028.55022	0.55249	0.00028469	-0.64102	-0.00033031	-0.088538	-4.5622E-05	515.2824619538798	30.893	0.5206	30.893	30.659	31.18	0					17	9	3	0	0	0	0.76143	1	11365	11365		15.248	0.41021	1	15100000			22485	3413	14135	14216	21619	21619					0.03709135235044414
NLNYYIVWCWR	11	Unmodified	_NLNYYIVWCWR_					0	0	0			REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.91766357421875	3	510.583456	1528.72854	0.29908	0.00015271	-1.2157	-0.00062072	-0.91663	-0.00046802	510.5829816076638	29.133	0.30782	28.817	28.606	28.914	-0.31613					9	5	3	0	0	0	0.74191	1	10672	10672		2.2527	0	1	33584000	+		22486	16335	14136	14217	21620	21620					-0.014675181175789476
NLNYYIVWCWR	11	Unmodified	_NLNYYIVWCWR_					0	0	0			REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	510.583456	1528.72854	0.63839	0.00032595	-1.3101	-0.00066891	-0.6717	-0.00034296	510.58277300384776	28.772	0.73396	28.772	28.535	29.269	0	-0.075695	-3.6687E-05	NaN	2.2527	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74456000	+		22487	16335	14136	14217							-0.014675181175789476
NLPDEIYHV	9	Unmodified	_NLPDEIYHV_					0	0	0		ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	MSMS	HCT116MG_D190212_S1	1	550.2750244140625	2	550.274564	1098.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.551	1	44.551	44.051	45.051	0								0	0	0	0.15181	1	16856	16856		50.855	26.834	1				22488	4016	14137	14218	21621	21621					-0.010751512820206699
NLPDEIYHV	9	Unmodified	_NLPDEIYHV_					0	0	0		ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	ENSG00000148335|ENST00000372483|NTMT1	MSMS	HCT116MG_D190212_S2	2	550.2749633789062	2	550.274564	1098.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.619	1	44.534	44.034	45.034	-0.084797								0	0	0	0.084787	1	16948	16948		60.39	22.214	1				22489	4016	14137	14218	21622	21622					-0.010751512820206699
NLQEGEFLL	9	Unmodified	_NLQEGEFLL_					0	0	0		AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant;ENSG00000106546|ENST00000242057|AHR	AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant	AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1062.546142578125	1	1062.5466	1061.53933	0.65216	0.00069295	-0.61923	-0.00065796	0.032924	3.4983E-05	1062.5456335763668	56.84	0.15777	56.661	56.582	56.739	-0.17904					6	2	3	0	0	0	0.069315	1	21965	21965		65.235	42.499	1	14884000			22490	85	14138	14219	21623	21623					0.011017328607749732
NLQHLSVLE	9	Unmodified	_NLQHLSVLE_					0	0	0		nc|ENSG00000030066|Q12769|NUP160;ENSG00000030066|ENST00000378460|NUP160	nc|ENSG00000030066|Q12769|NUP160	nc|ENSG00000030066|Q12769|NUP160	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7901611328125	2	526.790381	1051.56621	0.64191	0.00033815	-0.4363	-0.00022984	0.20561	0.00010831	526.7901660442533	47.522	0.20654	47.4	47.285	47.491	-0.12175					5	3	2	0	0	0	0.22946	1	18150	18150		38.176	3.2435	1	10896000			22491	965	14139	14220	21624	21624					0.04248841471940068
NLQKRLLL	8	Unmodified	_NLQKRLLL_					0	0	0			REV__DACT1|p.N107S|1|0.11|ENSG00000165617|chr14:58638522-58638522|A/G|missense_variant	REV__DACT1|p.N107S|1|0.11|ENSG00000165617|chr14:58638522-58638522|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	499.33001708984375	2	499.329476	996.6444	0.27995	0.00013978	0.81417	0.00040654	1.0941	0.00054633	499.32977842509666	58.743	0.3573	58.743	58.514	58.871	0					13	6	3	0	0	0	0.87576	1	22673	22673		0.79363	0	1	28090000	+		22492	10327	14140	14221	21625	21625					0.14594318847866816
NLQYTPERQ	9	Unmodified	_NLQYTPERQ_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	HCT116MG_D190212_S4	4	574.2465209960938	2	574.78837	1147.56219	0.44596	0.00025633	0.37351	0.00021469	0.81947	0.00047102	574.7882797872132	22.344	0.77908	22.116	21.572	22.351	-0.22777					17	14	2	0	0	0	0.25004	1	7603	7603		10.824	0.75	1	2168100	+		22493	11857	14141	14222	21626	21626					-0.005692480217476259
NLQYTPERQ	9	Unmodified	_NLQYTPERQ_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH	HCT116MG_D190212_S3	3		2	574.78837	1147.56219	0.44132	0.00025366	-0.12441	-7.1512E-05	0.3169	0.00018215	574.7882592520994	22.206	0.36448	22.206	21.99	22.354	0.00074577	0.045278	-0.00028239	NaN	10.824	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2093200	+		22494	11857	14141	14222							-0.005692480217476259
NLRFEIWFRRR	11	Unmodified	_NLRFEIWFRRR_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MSMS	HCT116MG_D190212_S2	2	796.9507446289062	2	796.949676	1591.8848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.083	1	40.01	39.51	40.51	-0.072838								0	0	0	0.96157	1	15106	15106		0.26902	0.033176	1				22495	6045	14142	14223	21627	21627					0.11253108167875325
NLRHFRRGRRR	11	Unmodified	_NLRHFRRGRRR_					0	0	0		DMXL1|p.L410Yfs*17|1|0.13|ENSG00000172869|chr5:119129331-119129331|T/-|frameshift_variant;DMXL1|p.S719Ffs*6|1|0.09|ENSG00000172869|chr5:119134074-119134075|-/T|frameshift_variant;DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant;DMXL1|p.F1668Lfs*15|1|0.41|ENSG00000172869|chr5:119166644-119166644|T/-|frameshift_variant;DMXL1|p.L1702Sfs*11|1|0.37|ENSG00000172869|chr5:119166742-119166743|-/T|frameshift_variant;DMXL1|p.S1844Vfs*9|1|0.1|ENSG00000172869|chr5:119170317-119170317|A/-|frameshift_variant;nc|ENSG00000172869|Q9Y485|DMXL1;DMXL1|p.N3021Mfs*3|1|0.28|ENSG00000172869|chr5:119247193-119247193|A/-|frameshift_variant;ENSG00000172869|ENST00000539542|DMXL1	DMXL1|p.L410Yfs*17|1|0.13|ENSG00000172869|chr5:119129331-119129331|T/-|frameshift_variant	DMXL1|p.L410Yfs*17|1|0.13|ENSG00000172869|chr5:119129331-119129331|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	762.4525146484375	2	762.453782	1522.89301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.878	1	50.524	50.024	51.024	-0.35483								0	0	0	0.96141	1	18918	18918		0.35063	0.043601	1				22496	694	14143	14224	21628	21628					0.1524809992788505
NLRRRLEEHKL	11	Unmodified	_NLRRRLEEHKL_					0	0	0		tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	tr|U7SU37|U7SU37_FUSNUSegregationandcondensationproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01295PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	366.7191467285156	4	366.719296	1462.84808	-0.021201	-7.7749E-06	-0.31955	-0.00011718	-0.34075	-0.00012496	366.71918793125417	9.6341	0.10163	9.6341	9.563	9.6646	0					12	8	2	0	0	0	0.74191	1	2911	2911		0.094841	0	1	395540			22497	18463	14144	14225	21629	21629					0.13516811551357932
NLSGFGSEQ	9	Unmodified	_NLSGFGSEQ_					0	0	0		ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A;ENST00000570311.1_1_17:45097119-45126782:+|nuORF;LRRC37A3|p.K1304Nfs*11|2|0.36|ENSG00000176809|chr17:64860234-64860234|T/-|frameshift_variant;LRRC37A3|p.F1359Cfs*8|1|0.04|ENSG00000176809|chr17:64860070-64860071|-/ACACAAACTAC|frameshift_variant;ENSG00000176809|ENST00000584306|LRRC37A3;ENST00000514785.1_1_4:103651695-103651851:-|nuORF;ENST00000398849.6_1_17:28942955-28960136:+|nuORF;ENST00000572638.1_1_17:44625595-44632942:+|nuORF	ENSG00000238083|ENST00000576629|LRRC37A2	ENSG00000238083|ENST00000576629|LRRC37A2	MULTI-MSMS	HCT116MG_D190212_S4	4	938.421875	1	938.421401	937.414125	0.66772	0.00062661	0.10953	0.00010278	0.77725	0.00072939	938.4212867840985	20.517	0.72764	20.315	19.885	20.612	-0.20133					23	13	2	0	0	0	0.1935	1	6967	6967		41.956	2.0059	1	3015000			22498	5429	14145	14226	21630	21630					-0.05708559275603875
NLSGFGSEQ	9	Unmodified	_NLSGFGSEQ_					0	0	0		ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A;ENST00000570311.1_1_17:45097119-45126782:+|nuORF;LRRC37A3|p.K1304Nfs*11|2|0.36|ENSG00000176809|chr17:64860234-64860234|T/-|frameshift_variant;LRRC37A3|p.F1359Cfs*8|1|0.04|ENSG00000176809|chr17:64860070-64860071|-/ACACAAACTAC|frameshift_variant;ENSG00000176809|ENST00000584306|LRRC37A3;ENST00000514785.1_1_4:103651695-103651851:-|nuORF;ENST00000398849.6_1_17:28942955-28960136:+|nuORF;ENST00000572638.1_1_17:44625595-44632942:+|nuORF	ENSG00000238083|ENST00000576629|LRRC37A2	ENSG00000238083|ENST00000576629|LRRC37A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	938.421401	937.414125	0.51371	0.00048208	0.37764	0.00035439	0.89135	0.00083646	938.4216222136214	20.357	0.78112	20.405	19.895	20.676	0.048107	0.044896	0.00011446	NaN	41.956	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2954900			22499	5429	14145	14226							-0.05708559275603875
NLSIYSTG	8	Unmodified	_NLSIYSTG_					0	0	0		ENST00000541600.5_1_2:222436882-222437059:-|nuORF	ENST00000541600.5_1_2:222436882-222437059:-|nuORF	ENST00000541600.5_1_2:222436882-222437059:-|nuORF	MSMS	HCT116MG_D190212_S4	4	427.7164611816406	2	427.71635	853.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.011	1	29.654	29.154	30.154	-0.3571								0	0	0	0.8837	1	10862	10862		5.2307	0	1				22500	8695	14146	14227	21631	21631					-0.014424697818867571
NLSKAEAV	8	Unmodified	_NLSKAEAV_					0	0	0		ENSG00000138823|ENST00000265517|MTTP;ENST00000369535.4_1_1:115258780-115259488:-|nuORF	ENSG00000138823|ENST00000265517|MTTP	ENSG00000138823|ENST00000265517|MTTP	MSMS	HCT116MG_D190212_S2	2	416.2322692871094	2	416.232168	830.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.833	1	24.458	23.958	24.958	-0.37521								0	0	0	0.65638	1	8916	8916		34.102	7.2188	1				22501	3594	14147	14228	21632	21632					0.027775229720418793
NLTKLSLIFSH	11	Unmodified	_NLTKLSLIFSH_					0	0	0		CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant;CBL|p.V581Cfs*4|1|0.08|ENSG00000110395|chr11:119285359-119285360|-/C|frameshift_variant;nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000110395|ENST00000264033|CBL;ENSG00000114423|ENST00000394030|CBLB	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	CBL|p.L272*|1|0.25|ENSG00000110395|chr11:119274894-119274894|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	636.8711547851562	2	636.869163	1271.72377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.473	1	37.37	36.87	37.87	-0.10318								0	0	0	0.94538	1	14047	14047		8.7454	0.58988	1				22502	337	14148	14229	21633	21633					0.09877921011320723
NLTLFKVFANF	11	Unmodified	_NLTLFKVFANF_					0	0	0		tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1	tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1	tr|U7SWD7|U7SWD7_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00991PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	657.365234375	2	657.366256	1312.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.221	1	49.862	49.362	50.362	-0.35878								0	0	0	0.94538	1	18652	18652		8.7454	0.58988	1				22503	18500	14149	14230	21634	21634					0.07410822499673486
NLTSLQKEE	9	Unmodified	_NLTSLQKEE_					0	0	0		ENST00000343526.8_1_7:138269713-138269824:+|nuORF	ENST00000343526.8_1_7:138269713-138269824:+|nuORF	ENST00000343526.8_1_7:138269713-138269824:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	531.29248046875	2	531.277303	1060.54005	0.29397	0.00015618	0.77324	0.0004108	1.0672	0.00056698	531.2772459129649	25.68	0.83497	25.68	25.197	26.032	0					19	15	2	0	0	0	0.43843	1	9370	9370		20.415	1.0526	1	8537100			22504	7245	14150	14231	21635	21635					0.012205275098040147
NLVFDVRNY	9	Unmodified	_NLVFDVRNY_					0	0	0		tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1	tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1	tr|U7T5R8|U7T5R8_FUSNUMalonicsemialdehydereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00059PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	570.2957763671875	2	570.29583	1138.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.642	1	33.449	32.949	33.949	-0.19297								0	0	0	0.76603	1	12491	12491		14.838	0	1				22505	18636	14151	14232	21636	21636					0.013362438462309001
NLVFLPLG	8	Unmodified	_NLVFLPLG_					0	0	0		ENST00000400335.8_1_22:29539276-29539381:+|nuORF	ENST00000400335.8_1_22:29539276-29539381:+|nuORF	ENST00000400335.8_1_22:29539276-29539381:+|nuORF	MSMS	HCT116MG_D190212_S4	4	436.7656555175781	2	436.765646	871.516739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.503	1	48.136	47.636	48.636	-0.36728								0	0	0	0.8837	1	17966	17966		0.69038	0	1				22506	7694	14152	14233	21637	21637					0.07584178253819118
NLVIIIVMF	9	Unmodified	_NLVIIIVMF_					0	0	0			REV__ENST00000493491.5_1_3:4841632-4887906:+|nuORF	REV__ENST00000493491.5_1_3:4841632-4887906:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	532.501953125	2	531.325014	1060.63547	0.45936	0.00024407	0.016093	8.5505E-06	0.47545	0.00025262	531.3249258040651	52.459	1.6628	52.119	51.679	53.342	-0.34023					83	31	4	0	0	0	0.74917	1	19727	19727		1.8442	0	1	81848000	+		22507	12590	14153	14234	21638	21638					0.1075820916714747
NLVIMGRKTWF	11	Unmodified	_NLVIMGRKTWF_					0	0	0		ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	ENSG00000178700|ENST00000314636|DHFR2	MSMS	HCT116MG_D190212_S2	2	682.8768310546875	2	682.879007	1363.74346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.558	1	49.395	48.895	49.895	-0.16369								0	0	0	0.95273	1	18971	18971		4.897	1.6157	1				22508	5511	14154	14235	21639	21639					0.0761397375042634
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		MAP3K9|p.S907Rfs*21|1|0.24|ENSG00000006432|chr14:70732651-70732651|G/-|frameshift_variant;MAP3K9|p.P970Qfs*74|1|0.11|ENSG00000006432|chr14:70730786-70730786|G/-|frameshift_variant;ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	MAP3K9|p.S907Rfs*21|1|0.24|ENSG00000006432|chr14:70732651-70732651|G/-|frameshift_variant	MAP3K9|p.S907Rfs*21|1|0.24|ENSG00000006432|chr14:70732651-70732651|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	479.7791748046875	2	479.277441	956.540328	0.42636	0.00020434	-0.078596	-3.7669E-05	0.34776	0.00016667	479.27721566234277	45.845	0.96188	45.472	44.736	45.698	-0.37206					35	19	2	0	0	0	0.71898	1	16956	16956		3.9444	0	1	9310000			22509	826	14155	14236	21640	21640					0.06031992020336929
NLVKQHKK	8	Unmodified	_NLVKQHKK_					0	0	0			REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	497.811279296875	2	497.811451	993.608348	0.27185	0.00013533	-0.62355	-0.00031041	-0.3517	-0.00017508	497.8110094066471	60.747	0.92532	60.747	60.543	61.469	0					30	17	2	0	0	0	0.87635	1	23424	23424		0.69038	0	1	147980000	+		22510	12134	14156	14237	21641	21641					0.11128861670999868
NLVLEKSSR	9	Unmodified	_NLVLEKSSR_					0	0	0		CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;ENSG00000164309|ENST00000446378|CMYA5	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	523.302978515625	2	523.303655	1044.59276	0.38243	0.00020013	0.21485	0.00011243	0.59728	0.00031256	523.3036513002883	47.414	1.968	47.414	46.44	48.408	0					106	38	4	0	0	0	0.69954	2	17676	17676;17904		5.2969	1.7004	1	136680000			22511	488	14157	14238	21642;21643	21642					0.07224530363305348
NLVLHKRQ	8	Unmodified	_NLVLHKRQ_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	MSMS	HCT116MG_D190212_S3	3	503.91058349609375	2	504.309075	1006.6036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.875	1	49.56	49.06	50.06	-0.31525								0	0	0	0.8837	1	18793	18793		12.532	0.89125	1		+		22512	12542	14158	14239	21644	21644					0.10055977528224957
NLVQLFSSL	9	Unmodified	_NLVQLFSSL_					0	0	0		ENST00000331738.11_2_12:122989707-122989782:-|nuORF	ENST00000331738.11_2_12:122989707-122989782:-|nuORF	ENST00000331738.11_2_12:122989707-122989782:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	510.3197326660156	2	510.78985	1019.56515	0.31085	0.00015878	-0.35663	-0.00018216	-0.045774	-2.3381E-05	510.789605764137	49.523	0.36079	49.523	49.286	49.647	0					10	6	3	0	0	0	0.59184	1	18823	18823		11.64	0	1	28942000			22513	7162	14159	14240	21645	21645					0.056146271030456774
NLVQRGLN	8	Unmodified	_NLVQRGLN_					0	0	0		ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	457.2640380859375	2	457.264333	912.514114	-0.0014054	-6.4266E-07	0.19217	8.7873E-05	0.19077	8.7231E-05	457.2643625930388	44.052	2.8608	44.052	42.538	45.399	0					83	54	3	0	0	0	0.82475	1	16507	16507		8.5933	3.3626	1	31301000			22514	7869	14160	14241	21646	21646					0.05435722848858404
NLVRSRTLIPT	11	Unmodified	_NLVRSRTLIPT_					0	0	0			REV__ENST00000541836.5_1_16:15021147-15029115:+|nuORF	REV__ENST00000541836.5_1_16:15021147-15029115:+|nuORF	MSMS	HCT116MG_D190212_S3	3	635.7916870117188	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.126	1	41.823	41.323	42.323	-0.30288								0	0	0	0.94538	1	15683	15683		8.7454	2.0222	1		+		22515	16372	14161	14242	21647	21647					0.13284128134205275
NLVSFIQLS	9	Unmodified	_NLVSFIQLS_					0	0	0			REV__nc|ENSG00000112562|Q9H3U7-2|SMOC2	REV__nc|ENSG00000112562|Q9H3U7-2|SMOC2	MULTI-MSMS	HCT116MG_D190212_S2	2	510.7066345214844	2	510.78985	1019.56515	0.29129	0.00014879	0.21025	0.00010739	0.50153	0.00025618	510.7898655788356	51.382	0.46473	51.204	50.862	51.326	-0.17869					12	8	3	0	0	0	0.61923	1	19684	19684		10.074	0.6908	1	9390100	+		22516	17109	14162	14243	21648	21648					0.05614627103068415
NLVSVNERLVY	11	Unmodified	_NLVSVNERLVY_					0	0	0		nc|ENSG00000141391|Q96N28-2|PRELID3A;ENSG00000141391|ENST00000440960|PRELID3A	nc|ENSG00000141391|Q96N28-2|PRELID3A	nc|ENSG00000141391|Q96N28-2|PRELID3A	MSMS	HCT116MG_D190212_S2	2	653.3621215820312	2	653.361702	1304.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.763	1	15.429	14.929	15.929	-0.33451								0	0	0	0.95636	1	5260	5260		2.9952	0	1				22517	3714	14163	14244	21649	21649					0.06868429143332833
NLYDQIVF	8	Unmodified	_NLYDQIVF_					0	0	0		nc|ENSG00000186038|A5X5Y0-2|HTR3E;ENSG00000186038|ENST00000415389|HTR3E;nc|ENSG00000186038|A5X5Y0-4|HTR3E;nc|ENSG00000186038|A5X5Y0-3|HTR3E;nc|ENSG00000186038|A5X5Y0-6|HTR3E	nc|ENSG00000186038|A5X5Y0-2|HTR3E	nc|ENSG00000186038|A5X5Y0-2|HTR3E	MSMS	HCT116MG_D190212_S3	3	506.2615051269531	2	506.260925	1010.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.339	1	54.043	53.543	54.543	-0.29587								0	0	0	0.8837	1	20588	20588		7.9102	0	1				22518	5866	14164	14245	21650	21650					0.0024636517761109644
NLYIGSFPP	9	Unmodified	_NLYIGSFPP_					0	0	0			REV__ENSG00000148450|ENST00000376510|MSRB2	REV__ENSG00000148450|ENST00000376510|MSRB2	MSMS	HCT116MG_D190212_S4	4	504.2648010253906	2	504.263468	1006.51238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.706	1	29.357	28.857	29.857	-0.34921								0	0	0	0.76818	1	10739	10739		7.2892	0	1		+		22519	12545	14165	14246	21651	21651					0.009386690402379827
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	541.3053588867188	2	540.808042	1079.60153	0.38578	0.00020864	-2.3359	-0.0012633	-1.9502	-0.0010547	541.3072544724643	48.762	0.61818	48.762	48.408	49.027	0					17	11	2	0	0	0	0.52876	1	18550	18550		15.248	4.4246	1	6574200			22520	218	14166	14247	21652	21652					0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	ATIC|p.E517Rfs*11|1|0.32|ENSG00000138363|chr2:215349139-215349151|GAGTTACTCACTG/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	540.3302001953125	2	540.808042	1079.60153	0.55132	0.00029816	-0.88803	-0.00048026	-0.33671	-0.0001821	540.8080045058495	49.212	0.42242	48.896	48.552	48.975	-0.31596					11	7	2	0	0	0	0.19289	1	18536	18536		32.037	15.095	1	4168800			22521	218	14166	14247	21653	21653					0.06491503999745873
NMDNMFESY	9	Oxidation (M)	_NMDNM(Oxidation (M))FESY_		NM(0.291)DNM(0.709)FESY		NM(-3.9)DNM(3.9)FESY	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	584.2117919921875	2	583.710082	1165.40561	0.33762	0.00019707	-0.11666	-6.8098E-05	0.22096	0.00012897	584.2115884730948	40.047	0.25931	40.047	39.917	40.176	0					7	4	2	0	0	0	0.061422	1	15063	15063		69.105	57.61	2	17150000		+	22522	558;541	14167	14248	21654	21654		11;12			-0.1704761729877191
NMDNMFESY	9	Oxidation (M)	_NM(Oxidation (M))DNMFESY_		NM(1)DNMFESY		NM(40)DNM(-40)FESY	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	583.7103881835938	2	583.710082	1165.40561	0.50785	0.00029644	-0.19205	-0.0001121	0.3158	0.00018434	583.7099224238914	44.884	0.30996	44.884	44.724	45.034	0					9	5	2	0	0	0	0.016701	1	17008	17008		99.799	75.778	2	31897000		+	22523	558;541	14167	14248	21655	21655		11;12			-0.1704761729877191
NMDNMFESY	9	Oxidation (M)	_NMDNM(Oxidation (M))FESY_		NM(0.291)DNM(0.709)FESY		NM(-3.9)DNM(3.9)FESY	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	583.710205078125	2	583.710082	1165.40561	0.38131	0.00022257	-0.080784	-4.7154E-05	0.30052	0.00017542	583.7100083386357	40.289	0.5208	39.987	39.851	40.371	-0.30161					13	9	3	0	0	0	0.053544	1	14976	14976		72.968	56.026	2	10464000		+	22524	558;541	14167	14248	21656	21656		11;12			-0.1704761729877191
NMDNMFESY	9	Oxidation (M)	_NM(Oxidation (M))DNMFESY_		NM(0.999)DNM(0.001)FESY		NM(30)DNM(-30)FESY	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	583.7105102539062	2	583.710082	1165.40561	0.53884	0.00031453	-0.28037	-0.00016366	0.25847	0.00015087	583.7101484890203	45.124	0.52153	44.815	44.628	45.15	-0.30927					24	9	4	0	0	0	0.01405	2	16886	16871;16886		103.35	68.952	2	24952000		+	22525	558;541	14167	14248	21657;21658	21658		11;12			-0.1704761729877191
NMDNMFESY	9	Oxidation (M)	_NM(Oxidation (M))DNMFESY_		NM(0.998)DNM(0.002)FESY		NM(28)DNM(-28)FESY	0	0	1		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S4	4	584.2120361328125	2	583.710082	1165.40561	0.34419	0.00020091	0.20115	0.00011741	0.54535	0.00031832	583.7101438928729	45.177	0.34166	44.804	44.646	44.987	-0.37265					11	6	2	0	0	0	0.040027	1	16653	16653		79.596	54.197	2	4278600		+	22526	558;541	14167	14248	21659	21659		11;12			-0.1704761729877191
NMDNMFESY	9	Unmodified	_NMDNMFESY_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	575.7128295898438	2	575.712624	1149.4107	0.30614	0.00017625	-0.16906	-9.7331E-05	0.13708	7.8918E-05	575.7125416189273	51.429	0.30313	51.429	51.246	51.549	0					13	5	3	0	0	0	0.0094709	2	19653	19634;19653		114.65	87.765	1	74611000		+	22527	558;541	14167	14249	21660;21661	21661					-0.15803313436140343
NMDNMFESY	9	Unmodified	_NMDNMFESY_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	1150.417724609375	1	1150.41797	1149.4107	0.50425	0.0005801	-1.0363	-0.0011922	-0.53203	-0.00061206	1150.4169649512432	51.426	0.25187	51.426	51.297	51.549	0					7	4	2	0	0	0	0.027442	1	19660	19660		88.954	75.911	1	56510000		+	22528	558;541	14167	14249	21662	21662					-0.15803313436140343
NMDNMFESY	9	Unmodified	_NMDNMFESY_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S2	2	575.7132568359375	2	575.712624	1149.4107	0.44543	0.00025644	-0.037361	-2.1509E-05	0.40807	0.00023493	575.7125165732394	51.719	0.30731	51.536	51.373	51.68	-0.18368					9	5	2	0	0	0	0.041798	1	19871	19871		78.728	67.088	1	27044000		+	22529	558;541	14167	14249	21663	21663					-0.15803313436140343
NMDNMFESY	9	Unmodified	_NMDNMFESY_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	575.7129516601562	2	575.712624	1149.4107	0.44392	0.00025557	-0.1337	-7.6974E-05	0.31022	0.00017859	575.7125002540591	51.841	0.35828	51.532	51.332	51.69	-0.30927					14	6	3	0	0	0	0.0062667	1	19578	19578		126.57	92.463	1	37876000		+	22530	558;541	14167	14249	21664	21664					-0.15803313436140343
NMDNMFESY	9	Unmodified	_NMDNMFESY_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	1150.418701171875	1	1150.41797	1149.4107	0.44142	0.00050782	0.1303	0.0001499	0.57172	0.00065772	1150.4182532798839	51.824	0.30609	51.515	51.384	51.69	-0.30927					9	5	3	0	0	0	0.0094709	1	19591	19591		114.65	94.195	1	12023000		+	22531	558;541	14167	14249	21665	21665					-0.15803313436140343
NMDNMFESY	9	2 Oxidation (M)	_NM(Oxidation (M))DNM(Oxidation (M))FESY_		NM(1)DNM(1)FESY		NM(130)DNM(130)FESY	0	0	2		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S3	3	591.7080078125	2	591.707539	1181.40053	0.62899	0.00037218	-0.42379	-0.00025076	0.2052	0.00012142	591.7073673758508	35.13	0.46722	34.833	34.544	35.011	-0.29725					21	8	3	0	0	0	0.0062667	1	12908	12908		126.57	103.42	1	11321000		+	22532	558;541	14167	14250	21666	21666		11;12			-0.18291921161358005
NMEADPGQY	9	Unmodified	_NMEADPGQY_					0	0	0		nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	nc|ENSG00000172270|P35613-3|BSG	nc|ENSG00000172270|P35613-3|BSG	MULTI-MSMS	HCT116MG_D190212_S1	1	512.705810546875	2	512.705657	1023.39676	0.37149	0.00019047	0.088812	4.5534E-05	0.4603	0.000236	512.7055138641242	29.743	0.25966	29.743	29.581	29.841	0					6	4	2	0	0	0	0.0201	1	10899	10899		96.367	67.88	1	6655000			22533	5245	14168	14251	21667	21667					-0.11400222872930499
NMEADPGQY	9	Unmodified	_NMEADPGQY_					0	0	0		nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	nc|ENSG00000172270|P35613-3|BSG	nc|ENSG00000172270|P35613-3|BSG	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7059326171875	2	512.705657	1023.39676	0.28962	0.00014849	0.029498	1.5124E-05	0.31912	0.00016362	512.7056770317698	30.115	0.31584	29.866	29.65	29.965	-0.24946					11	5	3	0	0	0	0.020353	1	10980	10980		96.111	54.016	1	7617400			22534	5245	14168	14251	21668	21668					-0.11400222872930499
NMEADPGQY	9	Unmodified	_NMEADPGQY_					0	0	0		nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	nc|ENSG00000172270|P35613-3|BSG	nc|ENSG00000172270|P35613-3|BSG	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	512.705657	1023.39676	0.079125	4.0568E-05	0.053453	2.7406E-05	0.13258	6.7974E-05	512.7056392240963	29.925	0.30993	29.624	29.495	29.805	-0.30095	-0.11996	1.554E-05	NaN	96.367	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17197000			22535	5245	14168	14251							-0.11400222872930499
NMEANVKSQY	10	Unmodified	_NMEANVKSQY_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MSMS	HCT116MG_D190212_S1	1	592.2736206054688	2	592.274238	1182.53392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.537	1	26.537	26.037	27.037	0								0	0	0	0.8981	1	9592	9592		16.149	4.5088	1				22536	3028	14169	14252	21669	21669					-0.05004313993345022
NMFIRSPMLT	10	Unmodified	_NMFIRSPMLT_					0	0	0		ENST00000371610.6_1_20:49354400-49354505:+|nuORF	ENST00000371610.6_1_20:49354400-49354505:+|nuORF	ENST00000371610.6_1_20:49354400-49354505:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	605.3096923828125	2	605.309569	1208.60458	0.37724	0.00022835	0.14679	8.8856E-05	0.52404	0.0003172	605.3097386808954	32.456	0.31289	32.456	32.274	32.587	0					11	5	3	0	0	0	0.60826	1	11963	11963		27.629	7.2143	1	30235000			22537	7441	14170	14253	21670	21670					0.008626877906181107
NMKLGRPQ	8	Unmodified	_NMKLGRPQ_					0	0	0		SMARCA1|p.R129Q|1|0.65|ENSG00000102038|chrX:129516373-129516373|C/T|missense_variant	SMARCA1|p.R129Q|1|0.65|ENSG00000102038|chrX:129516373-129516373|C/T|missense_variant	SMARCA1|p.R129Q|1|0.65|ENSG00000102038|chrX:129516373-129516373|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	471.760009765625	2	472.260736	942.50692	0.13266	6.265E-05	-0.25488	-0.00012037	-0.12222	-5.7719E-05	472.26083812543385	18.949	0.3128	18.949	18.766	19.079	0					7	5	2	0	0	0	0.28869	1	6572	6572		24.674	5.2349	1	1378600			22538	18172	14171	14254	21671	21671					0.03336666976770175
NMMSGISSV	9	Unmodified	_NMMSGISSV_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S1	1	925.4126586914062	1	925.411765	924.404488	0.90765	0.00083995	-0.85373	-0.00079006	0.053919	4.9897E-05	925.4109963181776	45.18	0.2094	45.18	45.034	45.244	0					5	3	2	0	0	0	0.012496	1	17132	17132		107.19	49.716	1	22477000			22539	1770	14172	14255	21672	21672					-0.06073786876993381
NMMSGISSV	9	Unmodified	_NMMSGISSV_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	925.4127807617188	1	925.411765	924.404488	1.0359	0.00095867	-0.52523	-0.00048605	0.51071	0.00047262	925.4115840435956	45.223	0.31244	45.131	44.943	45.256	-0.092472					11	5	3	0	0	0	0.0035147	1	17198	17198		168.66	68.287	1	32668000			22540	1770	14172	14255	21673	21673					-0.06073786876993381
NMMSGISSV	9	Unmodified	_NMMSGISSV_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S3	3	925.4126586914062	1	925.411765	924.404488	0.92085	0.00085217	0.054022	4.9993E-05	0.97487	0.00090216	925.4117688167565	45.433	0.31324	45.122	44.939	45.253	-0.31094					8	5	2	0	0	0	0.0034935	1	17018	17018		166.45	81.091	1	10936000			22541	1770	14172	14255	21674	21674					-0.06073786876993381
NMSLVAAW	8	Unmodified	_NMSLVAAW_					0	0	0		FAR1|p.A287V|1|0.42|ENSG00000197601|chr11:13712019-13712019|C/T|missense_variant	FAR1|p.A287V|1|0.42|ENSG00000197601|chr11:13712019-13712019|C/T|missense_variant	FAR1|p.A287V|1|0.42|ENSG00000197601|chr11:13712019-13712019|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	446.2229919433594	2	446.223288	890.432024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.161	1	26.849	26.349	27.349	-0.3114								0	0	0	0.8837	1	9710	9710		9.3474	0	1				22542	9151	14173	14256	21675	21675					-0.017575155544705012
NMSPCMNECGQ	11	Unmodified	_NMSPCMNECGQ_					0	0	0			REV__nc|ENSG00000134940|P26436-11|ACRV1	REV__nc|ENSG00000134940|P26436-11|ACRV1	MSMS	HCT116MG_D190212_S1	1	607.2097778320312	2	607.208869	1212.40318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6619	1	2.6619	2.1619	3.1619	0								0	0	0	0.96003	1	796	796		1.0715	0.38109	1		+		22543	12075	14174	14257	21676	21676					-0.19452112299723012
NMTHTLEKP	9	Unmodified	_NMTHTLEKP_					0	0	0		ZNF599|p.R307L|1|0.52|ENSG00000153896|chr19:34759881-34759881|C/A|missense_variant	ZNF599|p.R307L|1|0.52|ENSG00000153896|chr19:34759881-34759881|C/A|missense_variant	ZNF599|p.R307L|1|0.52|ENSG00000153896|chr19:34759881-34759881|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	535.7691040039062	2	535.768591	1069.52263	0.44076	0.00023614	-0.16873	-9.0399E-05	0.27203	0.00014574	535.7685259472432	15.683	0.88493	15.768	15.404	16.289	0.085423					35	16	3	0	0	0	0.49039	1	5098	5098		8.7454	0	1	4869700			22544	18735	14175	14258	21677	21677					-0.009350912968329794
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(70)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S1	1	510.7552185058594	2	510.755149	1019.49575	0.51686	0.00026399	-0.41578	-0.00021236	0.10109	5.1632E-05	510.75478238328066	26.11	0.2087	26.11	25.98	26.188	0					6	3	2	0	0	0	0.05892	1	9444	9444		70.332	24.632	1	5982700			22545	6266	14176	14259	21678	21678		134			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_					0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	HCT116MG_D190212_S2	2		2	510.755149	1019.49575	0.22064	0.00011269	1.1164	0.00057022	1.3371	0.00068292	510.7555862533543	26.499	0.20762	26.138	26.024	26.232	-0.36164	0.0138	0.0012767	NaN	70.332	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6341800			22546	6266	14176	14259				134			-0.013221999080201385
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	HCT116MG_D190212_S1	1	502.75787353515625	2	502.757692	1003.50083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.011	1	33.011	32.511	33.511	0								0	0	0	0.016874	1	12202	12202		96.367	24.444	1				22547	6266	14176	14260	21679	21679					-0.0007789604541130757
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	HCT116MG_D190212_S2	2	502.75775146484375	2	502.757692	1003.50083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.238	1	33.045	32.545	33.545	-0.19297								0	0	0	3.4079E-05	1	12326	12326		145.13	73.207	1				22548	6266	14176	14260	21680	21680					-0.0007789604541130757
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	HCT116MG_D190212_S2	2	1004.508056640625	1	1004.50811	1003.50083	0.86264	0.00086653	-0.088969	-8.9371E-05	0.77367	0.00077716	1004.5080115543924	33.238	0.20818	33.045	32.914	33.123	-0.19297					5	3	2	0	0	0	5.2518E-08	1	12340	12340		165.72	83.83	1	18862000			22549	6266	14176	14260	21681	21681					-0.0007789604541130757
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7578430175781	2	502.757692	1003.50083	0.49251	0.00024761	0.044024	2.2134E-05	0.53653	0.00026974	502.75765461146574	33.36	0.19312	33.07	32.955	33.148	-0.29013					6	4	2	0	0	0	0.094138	1	12262	12262		59.368	15.596	1	10063000			22550	6266	14176	14260	21682	21682					-0.0007789604541130757
NMVDIIHSV	9	Unmodified	_NMVDIIHSV_					0	0	0		ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	514.767333984375	2	514.265684	1026.51682	0.17172	8.8308E-05	-0.57589	-0.00029616	-0.40417	-0.00020785	514.2653816731516	50.74	0.25854	50.74	50.574	50.833	0					7	4	2	0	0	0	0.023938	1	19384	19384		92.491	56.364	1	24235000			22551	2410	14177	14261	21683	21683					0.004618101914957151
NMVDIIHSV	9	Unmodified	_NMVDIIHSV_					0	0	0		ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	ENST00000475214.5_1_3:135974226-136045892:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	514.2657470703125	2	514.265684	1026.51682	0.20146	0.0001036	-0.4673	-0.00024032	-0.26584	-0.00013671	514.2655018811043	50.89	0.41423	50.711	50.552	50.966	-0.17868					14	7	3	0	0	0	0.0077497	1	19525	19525		118.89	75.036	1	47139000			22552	2410	14177	14261	21684	21684					0.004618101914957151
NMYGKVVTV	9	Unmodified	_NMYGKVVTV_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	HCT116MG_D190212_S1	1	505.7707214355469	2	505.770603	1009.52665	0.42363	0.00021426	0.079394	4.0155E-05	0.50303	0.00025442	505.7706093884781	37.1	0.20761	37.1	36.938	37.146	0					6	3	2	0	0	0	0.012596	1	13860	13860		106.94	57.007	1	23010000			22553	6054	14178	14262	21685	21685					0.022269981968747743
NMYGKVVTV	9	Unmodified	_NMYGKVVTV_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7706604003906	2	505.770603	1009.52665	0.35659	0.00018036	0.060524	3.0612E-05	0.41712	0.00021097	505.77052907781814	37.102	0.30925	36.987	36.808	37.117	-0.11478					12	5	3	0	0	0	0.0050238	1	13907	13907		137.42	85.155	1	60183000			22554	6054	14178	14262	21686	21686					0.022269981968747743
NMYGKVVTV	9	Oxidation (M)	_NM(Oxidation (M))YGKVVTV_		NM(1)YGKVVTV		NM(44)YGKVVTV	0	0	1		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-SECPEP	HCT116MG_D190212_S1	1	514.248291015625	2	513.76806	1025.52157	0.23987	0.00012324	-0.035016	-1.799E-05	0.20485	0.00010525	513.7680396338674	32.092	0.26073	32.092	31.909	32.17	0					7	4	2	0	0	0	0.14768	1	11846	11846		43.772	7.6454	1	6115200			22555	6054	14178	14263	21687	21687		127			0.009826943342659433
NMYLLNARY	9	Unmodified	_NMYLLNARY_					0	0	0		ENST00000499077.2_2_3:131082982-131083279:+|nuORF	ENST00000499077.2_2_3:131082982-131083279:+|nuORF	ENST00000499077.2_2_3:131082982-131083279:+|nuORF	MSMS	HCT116MG_D190212_S2	2	579.2932739257812	2	579.292233	1156.56991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.987	1	11.697	11.197	12.197	-0.28953								0	0	0	0.76967	1	3895	3895		2.0598	0	1				22556	8417	14179	14264	21688	21688					-0.002108120258526469
NNAAGQAG	8	Unmodified	_NNAAGQAG_					0	0	0		nc|ENSG00000189001|Q6UWP8-2|SBSN	nc|ENSG00000189001|Q6UWP8-2|SBSN	nc|ENSG00000189001|Q6UWP8-2|SBSN	MULTI-MSMS	HCT116MG_D190212_S1	1	702.31689453125	1	702.316542	701.309266	0.75773	0.00053216	-0.43205	-0.00030344	0.32567	0.00022873	702.3164839111396	33.946	0.41731	33.946	33.659	34.076	0					12	7	2	0	0	0	0.87635	1	12519	12519		0.69038	0	1	30650000			22557	9590	14180	14265	21689	21689					-0.05333635961528671
NNCNCNNCCNN	11	Unmodified	_NNCNCNNCCNN_					0	0	0		ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	MSMS	HCT116MG_D190212_S1	1	615.1812133789062	2	615.181174	1228.34779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0964	1	7.0964	6.5964	7.5964	0								0	0	0	0.96208	1	2142	2142		0	0	1				22558	3208	14181	14266	21690	21690					-0.2572452576748674
NNCNCNNCCNN	11	Unmodified	_NNCNCNNCCNN_					0	0	0		ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	MSMS	HCT116MG_D190212_S1	1	615.1812133789062	2	615.181174	1228.34779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.875	1	63.875	63.375	64.375	0								0	0	0	0.96208	1	24668	24668		0	0	1				22559	3208	14181	14266	21691	21691					-0.2572452576748674
NNCNCNNCCNN	11	Unmodified	_NNCNCNNCCNN_					0	0	0		ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	MSMS	HCT116MG_D190212_S2	2	615.1780395507812	2	615.181174	1228.34779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2404	1	7.0246	6.5246	7.5246	-0.21581								0	0	0	0.96208	1	2269	2269		0	0	1				22560	3208	14181	14266	21692	21692					-0.2572452576748674
NNCNCNNCCNN	11	Unmodified	_NNCNCNNCCNN_					0	0	0		ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	MSMS	HCT116MG_D190212_S3	3	615.1807861328125	2	615.181174	1228.34779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.995	1	12.051	11.551	12.551	0.055045								0	0	0	0.96208	1	3711	3711		0	0	1				22561	3208	14181	14266	21693	21693					-0.2572452576748674
NNCNCNNCCNN	11	Unmodified	_NNCNCNNCCNN_					0	0	0		ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	MSMS	HCT116MG_D190212_S3	3	615.1798706054688	2	615.181174	1228.34779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.562	1	62.339	61.839	62.839	-0.22315								0	0	0	0.96208	1	23900	23900		0	0	1				22562	3208	14181	14266	21694	21694					-0.2572452576748674
NNCNCNNCCNN	11	Unmodified	_NNCNCNNCCNN_					0	0	0		ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	MSMS	HCT116MG_D190212_S4	4	615.1802978515625	2	615.181174	1228.34779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3632	1	6.1063	5.6063	6.6063	-0.25684								0	0	0	0.96208	1	1944	1944		0	0	1				22563	3208	14181	14266	21695	21695					-0.2572452576748674
NNGNNGSN	8	Unmodified	_NNGNNGSN_					0	0	0			REV__TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant	REV__TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	790.308349609375	1	790.307434	789.300158	0.77225	0.00061031	0.014723	1.1635E-05	0.78697	0.00062195	790.3072968375602	44.26	0.83345	44.182	43.967	44.801	-0.078373					32	15	3	0	0	0	0.81191	2	16796	16748;16796		10.074	3.8681	1	422750000	+		22564	11079	14182	14267	21696;21697	21697					-0.10292029317849938
NNGNNGSN	8	Unmodified	_NNGNNGSN_					0	0	0			REV__TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant	REV__TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	790.3084106445312	1	790.307434	789.300158	0.96612	0.00076353	0.41729	0.00032979	1.3834	0.0010933	790.307511049504	44.571	0.4625	44.263	44.071	44.533	-0.30759					27	12	3	0	0	0	0.83605	1	16643	16643		7.2892	2.0586	1	109980000	+		22565	11079	14182	14267	21698	21698					-0.10292029317849938
NNGNNGSN	8	Unmodified	_NNGNNGSN_					0	0	0			REV__TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant	REV__TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	790.307434	789.300158	0.96612	0.00076353	0.41729	0.00032979	1.3834	0.0010933	790.307511049504	44.571	0.4625	44.263	44.071	44.533	-0.30759	0.040833	0.0001119	NaN	10.074	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109980000	+		22566	11079	14182	14267							-0.10292029317849938
NNIEEQRRNRL	11	Unmodified	_NNIEEQRRNRL_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;ENST00000548151.1_1_12:32886660-32890110:+|nuORF;ENST00000550093.5_1_12:32884403-32890891:+|nuORF	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MSMS	HCT116MG_D190212_S2	2	721.388671875	2	721.384562	1440.75457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.191	1	39.113	38.613	39.613	-0.077835								0	0	0	0.94416	1	14742	14742		9.3831	2.66	1				22567	1488	14183	14268	21699	21699					0.051824673782675745
NNKLNSVTDP	10	Unmodified	_NNKLNSVTDP_					0	0	0		TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28	TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant	TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	551.7813720703125	2	551.280377	1100.5462	0.4024	0.00022183	0.13704	7.5548E-05	0.53944	0.00029738	551.2805256615983	22.119	0.67737	22.12	21.834	22.511	0.00074577					17	12	2	0	0	0	0.71349	1	7690	7690		19.257	1.1106	1	28247000			22568	1670	14184	14269	21700	21700					-4.9542586793904775E-05
NNLRVLVVEK	10	Unmodified	_NNLRVLVVEK_					0	0	0		ENST00000503159.1_1_4:87856958-87857279:-|nuORF	ENST00000503159.1_1_4:87856958-87857279:-|nuORF	ENST00000503159.1_1_4:87856958-87857279:-|nuORF	MSMS	HCT116MG_D190212_S1	1	592.35400390625	2	592.361505	1182.70846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.987	1	44.987	44.487	45.487	0								0	0	0	0.95507	1	17034	17034		3.5965	0	1				22569	8434	14185	14270	21701	21701					0.12441054214127689
NNNSNQNF	8	Unmodified	_NNNSNQNF_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	476.1986999511719	2	476.199387	950.384222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6165	1	1.6774	1.1774	2.1774	0.060905								0	0	0	0.8837	1	499	499		0.69038	0	1				22570	3586	14186	14271	21702	21702					-0.09295498220956233
NNNVFLEEWEK	11	Unmodified	_NNNVFLEEWEK_					0	0	0			REV__TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant	REV__TBC1D5|p.F566Lfs*23|1|0.22|ENSG00000131374|chr3:17214261-17214261|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	711.3329467773438	2	711.338424	1420.66229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.049	1	51.74	51.24	52.24	-0.30927								0	0	0	0.93295	1	19667	19667		15.248	3.0078	1		+		22571	11960	14187	14272	21703	21703					-0.03121055478618473
NNPNCCNC	8	Unmodified	_NNPNCCNC_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MSMS	HCT116MG_D190212_S1	1	440.7853698730469	2	441.138572	880.262592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.485	1	57.485	56.985	57.985	0								0	0	0	0.8837	1	22122	22122		0.69038	0.69038	1				22572	6571	14188	14273	21704	21704					-0.18232903170985537
NNQSSNFGP	9	Unmodified	_NNQSSNFGP_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000411857.2_1_1:179425361-179425934:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	482.709716796875	2	482.709588	963.404623	0.22839	0.00011025	-0.60383	-0.00029147	-0.37543	-0.00018123	482.7095953958517	27.922	0.57168	27.922	27.541	28.113	0					15	10	2	0	0	0	0.12994	1	10111	10111		52.268	38.362	1	4147300			22573	441	14189	14274	21705	21705					-0.07854327561130958
NPAELYVED	9	Unmodified	_NPAELYVED_					0	0	0		ENST00000485407.1_1_13:39616195-39618420:+|nuORF;NHLRC3|p.K334Nfs*5|1|0.23|ENSG00000188811|chr13:39047880-39047880|A/-|frameshift_variant;ENSG00000188811|ENST00000379600|NHLRC3	ENST00000485407.1_1_13:39616195-39618420:+|nuORF	ENST00000485407.1_1_13:39616195-39618420:+|nuORF	MSMS	HCT116MG_D190212_S3	3	525.2431030273438	2	525.242929	1048.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.544	1	34.247	33.747	34.747	-0.29707								0	0	0	0.71946	1	12719	12719		18.146	5.6148	1				22574	6003	14190	14275	21706	21706					-0.05099136789885961
NPAVMQPP	8	Unmodified	_NPAVMQPP_					0	0	0		ATP7A|p.I537M|1|0.3|ENSG00000165240|chrX:78003140-78003140|A/G|missense_variant	ATP7A|p.I537M|1|0.3|ENSG00000165240|chrX:78003140-78003140|A/G|missense_variant	ATP7A|p.I537M|1|0.3|ENSG00000165240|chrX:78003140-78003140|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	427.21417236328125	2	427.215463	852.416374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.651	1	17.651	17.151	18.151	0								0	0	0	0.8837	1	6020	6020		9.3474	0.75416	1				22575	228	14191	14276	21707	21707					-0.015738020714934464
NPDGGPTA	8	Unmodified	_NPDGGPTA_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	HCT116MG_D190212_S3	3	728.32080078125	1	728.320959	727.313683	0.42844	0.00031204	-6.06E-05	-4.4136E-08	0.42838	0.000312	728.3209533229672	22.836	0.56029	22.817	22.439	22.999	-0.018869					14	10	2	0	0	0	0.41924	1	7976	7976		48.346	19.859	1	8153200	+		22576	17167	14192	14277	21708	21708					-0.06088171538624465
NPDGGPTA	8	Unmodified	_NPDGGPTA_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	HCT116MG_D190212_S4	4	728.321533203125	1	728.320959	727.313683	0.70212	0.00051137	-0.095437	-6.9509E-05	0.60669	0.00044186	728.3210072653029	22.814	0.46845	22.576	22.289	22.758	-0.23758					14	8	2	0	0	0	0.44484	1	7927	7927		46.021	15.796	1	3809300	+		22577	17167	14192	14277	21709	21709					-0.06088171538624465
NPDGGPTA	8	Unmodified	_NPDGGPTA_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	728.320959	727.313683	0.42844	0.00031204	-6.06E-05	-4.4136E-08	0.42838	0.000312	728.3209533229672	22.836	0.56029	22.817	22.439	22.999	-0.018869	0.12051	1.7503E-05	NaN	48.346	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8153200	+		22578	17167	14192	14277							-0.06088171538624465
NPDGGPTA	8	Unmodified	_NPDGGPTA_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	728.320959	727.313683	0.70212	0.00051137	-0.095437	-6.9509E-05	0.60669	0.00044186	728.3210072653029	22.814	0.46845	22.576	22.289	22.758	-0.23758	-0.12051	-5.1962E-05	NaN	48.346	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3809300	+		22579	17167	14192	14277							-0.06088171538624465
NPDLELRG	8	Unmodified	_NPDLELRG_					0	0	0			REV__sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	REV__sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	MSMS	HCT116MG_D190212_S1	1	457.2403869628906	2	457.240524	912.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.427	1	25.427	24.927	25.927	0								0	0	0	0.70483	1	9146	9146		30.225	0	1		+		22580	17552	14193	14278	21710	21710					0.006760238580227451
NPEAPSHTSA	10	Unmodified	_NPEAPSHTSA_					0	0	0		ENST00000570646.5_1_16:4526085-4526253:+|nuORF	ENST00000570646.5_1_16:4526085-4526253:+|nuORF	ENST00000570646.5_1_16:4526085-4526253:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7307434082031	2	505.73052	1009.44649	0.39328	0.00019889	-0.21846	-0.00011048	0.17482	8.8411E-05	505.73044460194825	22.939	0.416	22.554	22.362	22.778	-0.38521					12	7	3	0	0	0	0.65928	1	8176	8176		23.79	1.1317	1	13578000			22581	8892	14194	14279	21711	21711					-0.05785771872604073
NPEAPSHTSA	10	Unmodified	_NPEAPSHTSA_					0	0	0		ENST00000570646.5_1_16:4526085-4526253:+|nuORF	ENST00000570646.5_1_16:4526085-4526253:+|nuORF	ENST00000570646.5_1_16:4526085-4526253:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	505.73065185546875	2	505.73052	1009.44649	0.25579	0.00012936	0.0060735	3.0715E-06	0.26187	0.00013243	505.7306352001187	22.484	0.36458	22.465	22.335	22.699	-0.018869					9	6	2	0	0	0	0.71224	1	7915	7915		19.362	0	1	4611200			22582	8892	14194	14279	21712	21712					-0.05785771872604073
NPGAKLEDMK	10	Unmodified	_NPGAKLEDMK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	HCT116MG_D190212_S2	2	368.1900939941406	3	368.190225	1101.54884	-0.31537	-0.00011612	0.062944	2.3175E-05	-0.25243	-9.2941E-05	368.19016723306197	21.682	0.78047	21.297	21.115	21.896	-0.38503					19	14	2	0	0	0	0.83644	1	7678	7678		8.9762	1.3673	1	13022000			22583	6467	14195	14280	21713	21713					0.002131778746161217
NPGAKLEDMK	10	Unmodified	_NPGAKLEDMK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	368.190225	1101.54884	-0.31537	-0.00011612	0.062944	2.3175E-05	-0.25243	-9.2941E-05	368.19016723306197	21.682	0.78047	21.297	21.115	21.896	-0.38503	0	0	NaN	8.9762	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13022000			22584	6467	14195	14280							0.002131778746161217
NPGFGPGY	8	Unmodified	_NPGFGPGY_					0	0	0			REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	404.6848449707031	2	404.684853	807.355153	0.031131	1.2598E-05	0.073002	2.9543E-05	0.10413	4.2141E-05	404.68488538594266	27.163	0.26351	26.811	26.659	26.923	-0.35254					6	4	2	0	0	0	0.77285	1	9881	9881		14.582	5.2343	1	9656900	+		22585	11422	14196	14281	21714	21714					-0.056229907792840095
NPGFGPGY	8	Unmodified	_NPGFGPGY_					0	0	0			REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	808.36328125	1	808.36243	807.355153	1.0215	0.00082578	0.73118	0.00059106	1.7527	0.0014168	808.3628039129585	27.197	0.21	26.845	26.713	26.923	-0.35254					5	3	2	0	0	0	0.2761	1	9887	9887		14.582	10.637	1	7567500	+		22586	11422	14196	14281	21715	21715					-0.056229907792840095
NPGFLSDAVTG	11	Unmodified	_NPGFLSDAVTG_					0	0	0		SLC13A3|p.A465Pfs*38|1|0.31|ENSG00000158296|chr20:46566331-46566331|G/-|frameshift_variant;SLC13A3|p.L507Cfs*3|1|0.28|ENSG00000158296|chr20:46563527-46563527|G/-|frameshift_variant;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3	SLC13A3|p.A465Pfs*38|1|0.31|ENSG00000158296|chr20:46566331-46566331|G/-|frameshift_variant	SLC13A3|p.A465Pfs*38|1|0.31|ENSG00000158296|chr20:46566331-46566331|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	539.261962890625	2	539.264196	1076.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.26	1	17.901	17.401	18.401	-0.35901								0	0	0	0.81249	1	6265	6265		31.268	0.6318	1				22587	4367	14197	14282	21716	21716					-0.021357416616638147
NPLQLLKRI	9	Unmodified	_NPLQLLKRI_					0	0	0			REV__CCDC180|p.K1351Sfs*28|1|0.14|ENSG00000197816|chr9:97364063-97364063|C/-|frameshift_variant	REV__CCDC180|p.K1351Sfs*28|1|0.14|ENSG00000197816|chr9:97364063-97364063|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	547.8558959960938	2	547.855858	1093.69716	0.50329	0.00027573	0.090203	4.9418E-05	0.59349	0.00032515	547.8557518114822	60.096	1.1833	59.941	59.492	60.675	-0.15441					34	22	2	0	0	0	0.76814	1	23133	23133		0.52476	0	1	27371000	+		22588	10114	14198	14283	21717	21717					0.15406276910675842
NPLTRLRRRPL	11	Unmodified	_NPLTRLRRRPL_					0	0	0			REV__ENST00000562846.1_1_16:67595531-67595669:-|nuORF	REV__ENST00000562846.1_1_16:67595531-67595669:-|nuORF	MSMS	HCT116MG_D190212_S3	3	696.4379272460938	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.965	1	47.649	47.149	48.149	-0.31596								0	0	0	0.95954	1	18027	18027		1.3295	0.9789	1		+		22589	16502	14199	14284	21718	21718					0.1835372313919379
NPPWTPGP	8	Unmodified	_NPPWTPGP_					0	0	0		MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant	MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant	MYH14|p.G549Wfs*8|1|0.23|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	433.53741455078125	2	433.213778	864.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.501	1	17.151	16.651	17.651	-0.34933								0	0	0	0.8396	1	5960	5960		19.439	3.5918	1				22590	9350	14200	14285	21719	21719					-0.02462728853868157
NPQLEWQYYQ	10	Unmodified	_NPQLEWQYYQ_					0	0	0		REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000486117.1_1_2:100048385-100055261:-|nuORF	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	684.20361328125	2	684.814584	1367.61462	0.68531	0.00046931	-1.7817	-0.0012201	-1.0964	-0.00075081	684.8133580600544	28.146	0.15602	27.815	27.7	27.856	-0.33138					4	2	2	0	0	0	0.31123	1	10118	10118		0	0	1	1966100			22591	3385	14201	14286	21720	21720					-0.054487096788079725
NPRAQPSLYPE	11	Unmodified	_NPRAQPSLYPE_					0	0	0			REV__YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant	REV__YTHDF2|p.D80*|1|0.29|ENSG00000198492|chr1:28742500-28742501|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	636.3226928710938	2	636.322576	1270.6306	0.43436	0.0002764	-0.20907	-0.00013304	0.22529	0.00014336	636.322797531694	30.67	0.33278	30.412	30.327	30.66	-0.25761					10	6	2	0	0	0	0.71776	1	11217	11217		15.248	0.8431	1	7359200	+		22592	14127	14202	14287	21721	21721					0.006109965581117649
NPRLIIHV	8	Unmodified	_NPRLIIHV_					0	0	0			REV__FASN|p.A413Hfs*39|2|0.47|ENSG00000169710|chr17:82091478-82091478|G/-|frameshift_variant	REV__FASN|p.A413Hfs*39|2|0.47|ENSG00000169710|chr17:82091478-82091478|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	481.30267333984375	2	481.300719	960.586885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.283	1	52.948	52.448	53.448	-0.33473								0	0	0	0.8837	1	19889	19889		2.3027	0	1		+		22593	13261	14203	14288	21722	21722					0.1050147664227552
NPRRPPALTSL	11	Unmodified	_NPRRPPALTSL_					0	0	0		ENST00000440496.5_1_X:102100835-102120012:+|nuORF	ENST00000440496.5_1_X:102100835-102120012:+|nuORF	ENST00000440496.5_1_X:102100835-102120012:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	611.3563232421875	2	611.356754	1220.69895	0.40824	0.00024958	-0.79247	-0.00048448	-0.38423	-0.0002349	611.3560333826423	49.064	0.62003	49.064	48.717	49.337	0					33	11	4	0	0	0	0.74191	1	18703	18703		2.7352	0	1	78756000			22594	7917	14204	14289	21723	21723					0.09743285928584555
NPRSTERKD	9	Unmodified	_NPRSTERKD_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	368.19158935546875	3	368.191504	1101.55268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.597	1	29.248	28.748	29.748	-0.34921								0	0	0	0.76954	1	10695	10695		2.4985	0	1		+		22595	12706	14205	14290	21724	21724					0.00596983692730646
NPSFGTLYSSF	11	Unmodified	_NPSFGTLYSSF_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.I2885Dfs*9|1|0.28|ENSG00000181143|chr19:8972486-8972487|-/C|frameshift_variant;MUC16|p.N2936Tfs*6|1|0.17|ENSG00000181143|chr19:8972332-8972332|T/-|frameshift_variant;MUC16|p.H3632Pfs*17|1|0.13|ENSG00000181143|chr19:8965875-8965876|-/G|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.L2546Kfs*23|1|0.04|ENSG00000181143|chr19:8973503-8973504|-/CCTT|frameshift_variant;MUC16|p.S330Pfs*2|1|0.15|ENSG00000181143|chr19:8980151-8980151|A/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	HCT116MG_D190212_S2	2	609.8016357421875	2	610.285128	1218.5557	0.70397	0.00042962	-1.1259	-0.0006871	-0.4219	-0.00025748	610.2838419046819	33.753	0.416	33.56	33.378	33.794	-0.19297					10	7	2	0	0	0	0.36272	1	12488	12488		12.241	5.5175	1	16544000			22596	5624	14206	14291	21725	21725					-0.044831859731630175
NPSKIIPIPQT	11	Unmodified	_NPSKIIPIPQT_					0	0	0			REV__STOX1|p.R463I|1|0.38|ENSG00000165730|chr10:68885184-68885184|G/T|missense_variant	REV__STOX1|p.R463I|1|0.38|ENSG00000165730|chr10:68885184-68885184|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	604.3547973632812	2	604.355888	1206.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.212	1	43.904	43.404	44.404	-0.30759								0	0	0	0.95408	1	16520	16520		4.1895	1.1943	1		+		22597	17599	14207	14292	21726	21726					0.10214232119983535
NPSLRNWPE	9	Unmodified	_NPSLRNWPE_					0	0	0			REV__ENSG00000185633|ENST00000554503|NDUFA4L2	REV__ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	HCT116MG_D190212_S3	3	371.5207824707031	3	371.520962	1111.54106	-0.19339	-7.1849E-05	0.21266	7.9009E-05	0.01927	7.1594E-06	371.52092444902416	32.056	0.57209	31.778	31.422	31.994	-0.27841					16	10	2	0	0	0	0.2853	1	11783	11783		23.79	10.271	1	3745300	+		22598	13853	14208	14293	21727	21727					-0.010252133306266842
NPSPRSPHAP	10	Unmodified	_NPSPRSPHAP_					0	0	0		ENST00000474114.5_1_21:45745300-45746742:+|nuORF	ENST00000474114.5_1_21:45745300-45746742:+|nuORF	ENST00000474114.5_1_21:45745300-45746742:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2697143554688	2	530.270147	1058.52574	0.47216	0.00025037	-0.7936	-0.00042082	-0.32143	-0.00017045	530.269883942052	21.4	0.25993	21.181	21.01	21.27	-0.21832					9	4	3	0	0	0	0.67188	1	7384	7384		22.736	5.6234	1	1220600			22599	8182	14209	14294	21728	21728					-0.001180801278223953
NPSPSPGPQ	9	Unmodified	_NPSPSPGPQ_					0	0	0			REV__ENST00000590513.2_1_17:40706293-40706518:-|nuORF	REV__ENST00000590513.2_1_17:40706293-40706518:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	880.4154663085938	1	880.415922	879.408646	0.75139	0.00066154	-0.26339	-0.00023189	0.488	0.00042964	880.415702390496	18.237	0.57289	18.313	18.101	18.674	0.076334					14	10	2	0	0	0	0.035349	1	6176	6176		81.89	10.757	1	2623900	+		22600	16687	14210	14295	21729	21729					-0.03588238067425209
NPSPSPGPQ	9	Unmodified	_NPSPSPGPQ_					0	0	0			REV__ENST00000590513.2_1_17:40706293-40706518:-|nuORF	REV__ENST00000590513.2_1_17:40706293-40706518:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	880.4159545898438	1	880.415922	879.408646	0.71672	0.00063102	-0.099046	-8.7201E-05	0.61768	0.00054381	880.4155069829544	18.317	0.46539	18.137	17.994	18.459	-0.18052					14	8	2	0	0	0	0.055677	1	6161	6161		71.922	0.78869	1	1426900	+		22601	16687	14210	14295	21730	21730					-0.03588238067425209
NPSPSPGPQ	9	Unmodified	_NPSPSPGPQ_					0	0	0			REV__ENST00000590513.2_1_17:40706293-40706518:-|nuORF	REV__ENST00000590513.2_1_17:40706293-40706518:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	880.415922	879.408646	0.75139	0.00066154	-0.26339	-0.00023189	0.488	0.00042964	880.415702390496	18.237	0.57289	18.313	18.101	18.674	0.076334	0.088302	-7.2905E-05	NaN	81.89	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2623900	+		22602	16687	14210	14295							-0.03588238067425209
NPSPSPGPQ	9	Unmodified	_NPSPSPGPQ_					0	0	0			REV__ENST00000590513.2_1_17:40706293-40706518:-|nuORF	REV__ENST00000590513.2_1_17:40706293-40706518:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	880.415922	879.408646	0.71672	0.00063102	-0.099046	-8.7201E-05	0.61768	0.00054381	880.4155069829544	18.317	0.46539	18.137	17.994	18.459	-0.18052	-0.088302	7.1788E-05	NaN	81.89	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1426900	+		22603	16687	14210	14295							-0.03588238067425209
NPVSASHSDP	10	Unmodified	_NPVSASHSDP_					0	0	0		PSG7|p.R227H|1|0.44|ENSG00000221878|chr19:42929471-42929471|C/T|missense_variant	PSG7|p.R227H|1|0.44|ENSG00000221878|chr19:42929471-42929471|C/T|missense_variant	PSG7|p.R227H|1|0.44|ENSG00000221878|chr19:42929471-42929471|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	506.2228698730469	2	505.73052	1009.44649	0.11219	5.674E-05	-0.098794	-4.9963E-05	0.0134	6.777E-06	505.73047074044405	22.814	0.31322	22.576	22.393	22.706	-0.23758					7	5	2	0	0	0	0.29734	1	7891	7891		13.906	3.8321	1	3858300			22604	9787	14211	14296	21731	21731					-0.05785771872615442
NPYKYRIKE	9	Unmodified	_NPYKYRIKE_					0	0	0			REV__ENST00000529172.1_1_11:68305336-68318669:+|nuORF	REV__ENST00000529172.1_1_11:68305336-68318669:+|nuORF	MSMS	HCT116MG_D190212_S1	1	605.8310546875	2	605.83258	1209.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.249	1	13.249	12.749	13.749	0								0	0	0	0.77008	1	4295	4295		0.6015	0	1		+		22605	11390	14212	14297	21732	21732					0.05416792288679062
NQDRPSLL	8	Unmodified	_NQDRPSLL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000559020.1_1_1:150940136-150940936:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	HCT116MG_D190212_S1	1	471.7535400390625	2	471.753798	941.493044	0.038354	1.8094E-05	0.52941	0.00024975	0.56776	0.00026784	471.7539049100555	36.705	0.31242	36.705	36.522	36.835	0					6	5	2	0	0	0	0.3588	1	13726	13726		53.833	6.9119	1	6653400			22606	3811	14213	14298	21733	21733					0.019957127493285043
NQDRPSLL	8	Unmodified	_NQDRPSLL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000559020.1_1_1:150940136-150940936:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	HCT116MG_D190212_S2	2	471.7539367675781	2	471.753798	941.493044	0.24173	0.00011404	0.067782	3.1977E-05	0.30951	0.00014601	471.75390222310483	36.846	0.361	36.731	36.602	36.963	-0.11478					8	6	2	0	0	0	0.12671	1	13818	13818		88.954	32.413	1	26175000			22607	3811	14213	14298	21734	21734					0.019957127493285043
NQDRPSLL	8	Unmodified	_NQDRPSLL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000559020.1_1_1:150940136-150940936:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	HCT116MG_D190212_S3	3	471.7532958984375	2	471.753798	941.493044	0.19617	9.2545E-05	-0.46306	-0.00021845	-0.26689	-0.0001259	471.75347030014547	37.044	0.26027	36.743	36.561	36.821	-0.30113					7	4	2	0	0	0	0.22303	1	13698	13698		69.105	22.184	1	4887200			22608	3811	14213	14298	21735	21735					0.019957127493285043
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000077312|ENST00000243563|SNRPA	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	HCT116MG_D190212_S1	1	533.27197265625	2	533.271824	1064.5291	0.28435	0.00015163	0.19398	0.00010344	0.47833	0.00025508	533.2718240768289	43.32	0.8812	43.32	42.951	43.833	0					35	16	3	0	0	0	0.057703	1	16353	16353		86.332	27.653	1	54524000			22609	2910	14214	14299	21736	21736					-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000077312|ENST00000243563|SNRPA	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	HCT116MG_D190212_S2	2	533.2717895507812	2	533.271824	1064.5291	0.19758	0.00010536	0.57478	0.00030652	0.77236	0.00041188	533.2718417220319	43.33	0.87528	43.257	42.891	43.767	-0.073376					53	16	4	0	0	0	0.14268	1	16375	16375		61.602	27.2	1	176220000			22610	2910	14214	14299	21737	21737					-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000077312|ENST00000243563|SNRPA	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MSMS	HCT116MG_D190212_S2	2	533.2718505859375	2	533.271824	1064.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.862	1	43.783	43.283	44.283	-0.078373								0	0	0	0.75215	1	16643	16643		17.113	3.2068	1				22611	2910	14214	14299	21738	21738					-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000077312|ENST00000243563|SNRPA	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2716674804688	2	533.271824	1064.5291	0.52781	0.00028147	-0.11332	-6.0431E-05	0.41449	0.00022104	533.2714581532772	43.666	0.52115	43.36	43.084	43.605	-0.30616					13	9	2	0	0	0	0.39716	1	16339	16339		29.841	8.3036	1	3162800			22612	2910	14214	14299	21739	21739					-0.0005883007379452465
NQKKIHLI	8	Unmodified	_NQKKIHLI_					0	0	0			REV__nc|ENSG00000178997|Q8NHP7|EXD1	REV__nc|ENSG00000178997|Q8NHP7|EXD1	MULTI-MSMS	HCT116MG_D190212_S2	2	497.314208984375	2	497.313826	992.613099	0.39802	0.00019794	-0.87521	-0.00043526	-0.47719	-0.00023731	497.31347544474727	46.403	0.41214	46.291	46.008	46.42	-0.11121					12	7	2	0	0	0	0.50777	1	17703	17703		40.449	2.2974	1	19736000	+		22613	13621	14215	14300	21740	21740					0.11649745813758727
NQLAAFNH	8	Unmodified	_NQLAAFNH_					0	0	0		PAX7|p.Y303Lfs*61|1|0.09|ENSG00000009709|chr1:18700766-18700767|-/C|frameshift_variant;PAX7|p.Y303Tfs*64|1|0.19|ENSG00000009709|chr1:18700767-18700767|C/-|frameshift_variant;ENSG00000009709|ENST00000420770|PAX7;nc|ENSG00000009709|P23759-2|PAX7;nc|ENSG00000009709|P23759-1|PAX7	PAX7|p.Y303Lfs*61|1|0.09|ENSG00000009709|chr1:18700766-18700767|-/C|frameshift_variant	PAX7|p.Y303Lfs*61|1|0.09|ENSG00000009709|chr1:18700766-18700767|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	457.72552490234375	2	457.727584	913.440614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.854	1	17.679	17.179	18.179	-0.17501								0	0	0	0.8396	1	5952	5952		19.439	1.304	1				22614	869	14216	14301	21741	21741					-0.01956825593629219
NQLQTAYH	8	Unmodified	_NQLQTAYH_					0	0	0			REV__ENSG00000173757|ENST00000293328|STAT5B	REV__ENSG00000173757|ENST00000293328|STAT5B	MSMS	HCT116MG_D190212_S2	2	487.73931884765625	2	487.738148	973.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.534	1	37.431	36.931	37.931	-0.10318								0	0	0	0.72655	1	14072	14072		28.487	1.6032	1		+		22615	13451	14217	14302	21742	21742					-0.026048602847708935
NQMPTQPQV	9	Unmodified	_NQMPTQPQV_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MSMS	HCT116MG_D190212_S1	1	521.7533569335938	2	521.752941	1041.49133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.391	1	31.391	30.891	31.891	0								0	0	0	0.34992	1	11548	11548		36.506	6.2814	1				22616	1704	14218	14303	21743	21743					-0.02775664330943073
NQMPTQPQV	9	Unmodified	_NQMPTQPQV_					0	0	0		ENSG00000100393|ENST00000263253|EP300;EP300|p.M1470Cfs*26|1|0.16|ENSG00000100393|chr22:41170521-41170521|A/-|frameshift_variant	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	HCT116MG_D190212_S2	2	521.753173828125	2	521.752941	1041.49133	0.58795	0.00030676	-0.1761	-9.1879E-05	0.41185	0.00021488	521.7527587710028	31.49	0.36267	31.242	31.043	31.406	-0.24883					11	6	2	0	0	0	0.0063854	1	11638	11638		125.53	81.671	1	15756000			22617	1704	14218	14303	21744	21744					-0.02775664330943073
NQQLLTKM	8	Unmodified	_NQQLLTKM_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MSMS	HCT116MG_D190212_S4	4	488.26953125	2	488.268227	974.521901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.881	1	34.495	33.995	34.995	-0.38606								0	0	0	0.68119	1	12754	12754		32.117	5.2333	1		+		22618	10987	14219	14304	21745	21745					0.03362114054118592
NQTGSLLRI	9	Unmodified	_NQTGSLLRI_					0	0	0			REV__sp|F5HDK1|US27_HCMVMEnvelopeglycoproteinUS27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US27PE=3SV=1	REV__sp|F5HDK1|US27_HCMVMEnvelopeglycoproteinUS27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US27PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	501.29132080078125	2	501.290548	1000.56654	0.36686	0.0001839	1.171	0.000587	1.5378	0.0007709	501.29093283233584	47.323	0.22342	47.323	47.217	47.441	0					8	4	2	0	0	0	0.51829	1	18000	18000		15.847	2.8047	1	36676000	+		22619	17555	14220	14305	21746	21746					0.06628261191792717
NQVIFPVSY	9	Unmodified	_NQVIFPVSY_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7819213867188	2	533.782025	1065.5495	0.47104	0.00025143	0.13791	7.3612E-05	0.60894	0.00032504	533.7818711364102	53.385	0.25833	53.385	53.255	53.514	0					7	4	2	0	0	0	0.016134	1	20462	20462		100.37	64.244	1	18058000			22620	2735	14221	14306	21747	21747					0.01934340586012695
NQVIFPVSY	9	Unmodified	_NQVIFPVSY_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7823486328125	2	533.782025	1065.5495	0.3398	0.00018138	-0.1135	-6.0582E-05	0.22631	0.0001208	533.7819327448011	53.678	0.61858	53.489	53.274	53.893	-0.1894					22	11	3	0	0	0	0.0046012	1	20631	20631		141.83	99.732	1	94170000			22621	2735	14221	14306	21748	21748					0.01934340586012695
NQVIFPVSY	9	Unmodified	_NQVIFPVSY_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	HCT116MG_D190212_S2	2	1066.55712890625	1	1066.55677	1065.5495	0.41048	0.0004378	0.19657	0.00020966	0.60705	0.00064746	1066.556844524065	53.696	0.3614	53.506	53.274	53.636	-0.1894					16	6	3	0	0	0	0.0077497	1	20639	20639		118.89	80.921	1	87860000			22622	2735	14221	14306	21749	21749					0.01934340586012695
NQVIFPVSY	9	Unmodified	_NQVIFPVSY_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	HCT116MG_D190212_S3	3	533.7821655273438	2	533.782025	1065.5495	0.47641	0.0002543	0.46588	0.00024868	0.94229	0.00050298	533.7819938817015	53.925	0.36444	53.625	53.404	53.769	-0.29946					13	6	3	0	0	0	0.042978	1	20408	20408		78.149	44.047	1	12069000			22623	2735	14221	14306	21750	21750					0.01934340586012695
NQVIFPVSY	9	Unmodified	_NQVIFPVSY_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	HCT116MG_D190212_S3	3	1066.5557861328125	1	1066.55677	1065.5495	0.56585	0.00060351	0.11998	0.00012796	0.68582	0.00073147	1066.5566029211386	53.887	0.25986	53.587	53.457	53.716	-0.29946					8	4	2	0	0	0	0.027492	1	20415	20415		88.904	46.809	1	5826000			22624	2735	14221	14306	21751	21751					0.01934340586012695
NQVIFPVSY	9	Unmodified	_NQVIFPVSY_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	HCT116MG_D190212_S4	4	533.7820434570312	2	533.782025	1065.5495	0.50768	0.00027099	-0.22538	-0.0001203	0.2823	0.00015069	533.7817402469324	53.922	0.26021	53.592	53.457	53.717	-0.32923					10	4	3	0	0	0	0.61923	1	20174	20174		10.074	5.3179	1	2979300			22625	2735	14221	14306	21752	21752					0.01934340586012695
NQVIFPVSY	9	Unmodified	_NQVIFPVSY_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50;NAA50|p.D103Mfs*40|2|0.21|ENSG00000121579|chr3:113722932-113722932|T/-|frameshift_variant	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1066.55677	1065.5495	0.83144	0.00088677	-0.61299	-0.00065379	0.21845	0.00023299	1066.5555315480171	53.385	0.2071	53.385	53.255	53.462	0	-0.1082	-0.00081929	NaN	118.89	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9564400			22626	2735	14221	14306							0.01934340586012695
NQVPCCAGEQY	11	Unmodified	_NQVPCCAGEQY_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MSMS	HCT116MG_D190212_S2	2	606.2434692382812	2	606.244623	1210.47469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.627	1	30.354	29.854	30.854	-0.27328								0	0	0	0.93456	1	11268	11268		14.405	1.3629	1		+		22627	14280	14222	14307	21753	21753					-0.12212533279193849
NQWDGTQHGV	10	Unmodified	_NQWDGTQHGV_					0	0	0		UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant;UTRN|p.R3003Pfs*5|1|0.27|ENSG00000152818|chr6:144793915-144793916|-/C|frameshift_variant;UTRN|p.G3160*|1|0.03|ENSG00000152818|chr6:144821001-144821002|AG/-|frameshift_variant;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN	UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant	UTRN|p.T2422Hfs*35|1|0.47|ENSG00000152818|chr6:144557282-144557282|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	571.2546997070312	2	571.254694	1140.49483	0.57425	0.00032804	-0.10613	-6.0627E-05	0.46812	0.00026741	571.2544401447257	28.352	0.26542	28.352	28.216	28.482	0					8	4	3	0	0	0	0.091457	1	10349	10349		75.761	54.014	1	15639000			22628	4164	14223	14308	21754	21754					-0.06979278232734032
NQWEALTEY	9	Unmodified	_NQWEALTEY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S2	2	577.2612915039062	2	577.261653	1152.50875	0.37729	0.00021779	-0.030571	-1.7647E-05	0.34671	0.00020014	577.2615333387203	51.086	0.31131	50.907	50.706	51.018	-0.17869					8	5	2	0	0	0	0.12205	1	19622	19622		53.833	33.379	1	9360400			22629	6063	14224	14309	21755	21755					-0.061400455242846874
NQYPPPPPP	9	Unmodified	_NQYPPPPPP_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MSMS	HCT116MG_D190212_S3	3	503.7385559082031	2	503.753267	1005.49198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.34	1	19.4	18.9	19.9	0.05983								0	0	0	0.54994	1	6626	6626		26.341	3.1929	1		+		22630	14280	14225	14310	21756	21756					-0.010545016195806056
NREVEQWQFEF	11	Unmodified	_NREVEQWQFEF_					0	0	0			REV__ENSG00000180257|ENST00000444460|ZNF816	REV__ENSG00000180257|ENST00000444460|ZNF816	MSMS	HCT116MG_D190212_S4	4	756.35302734375	2	756.349323	1510.68409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.808	1	19.614	19.114	20.114	-0.19367								0	0	0	0.95522	1	6741	6741		7.1017	3.8204	1		+		22631	13655	14226	14311	21757	21757					-0.05082250730060878
NRGLKTLHV	9	Unmodified	_NRGLKTLHV_					0	0	0		nc|ENSG00000116761|P32929-2|CTH;nc|ENSG00000116761|P32929-3|CTH;ENSG00000116761|ENST00000370938|CTH	nc|ENSG00000116761|P32929-2|CTH	nc|ENSG00000116761|P32929-2|CTH	MSMS	HCT116MG_D190212_S4	4	519.3141479492188	2	519.314358	1036.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.269	1	48.904	48.404	49.404	-0.365								0	0	0	0.76967	1	18269	18269		2.0598	0	1				22632	2537	14227	14312	21758	21758					0.09731960182648436
NRIPIKKPEPP	11	Unmodified	_NRIPIKKPEPP_					0	0	0			REV__nc|ENSG00000106443|O94880-2|PHF14	REV__nc|ENSG00000106443|O94880-2|PHF14	MSMS	HCT116MG_D190212_S3	3	430.2646179199219	3	430.262712	1287.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.203	1	48.887	48.387	49.387	-0.31596								0	0	0	0.95343	1	18523	18523		3.8459	0	1		+		22633	11297	14228	14313	21759	21759					0.13393316139536182
NRLSKKELY	9	Unmodified	_NRLSKKELY_					0	0	0		ENST00000487593.1_1_20:52779237-52781081:-|nuORF;nc|ENSG00000019186|Q07973-3|CYP24A1;nc|ENSG00000019186|Q07973-2|CYP24A1;ENSG00000019186|ENST00000216862|CYP24A1	ENST00000487593.1_1_20:52779237-52781081:-|nuORF	ENST00000487593.1_1_20:52779237-52781081:-|nuORF	MSMS	HCT116MG_D190212_S1	1	384.22247314453125	3	384.224146	1149.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.43	1	28.43	27.93	28.93	0								0	0	0	0.76991	1	10355	10355		1.1933	0	1				22634	937	14229	14314	21760	21760					0.08176792288713841
NRPIPENCALC	11	Unmodified	_NRPIPENCALC_					0	0	0		CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant	CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant	CLTCL1|p.M473Ifs*76|1|0.05|ENSG00000070371|chr22:19233268-19233269|-/TCGG|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	411.2348937988281	3	410.530364	1228.56926	-0.23414	-9.6122E-05	-2.9113	-0.0011952	-3.1455	-0.0012913	410.52940931934796	25.552	0.15667	25.183	25.082	25.239	-0.36914					4	2	2	0	0	0	0.36323	1	9190	9190		12.856	10.013	1	4838700			22635	482	14230	14315	21761	21761					-0.03587974737206423
NRRAKVEQL	9	Unmodified	_NRRAKVEQL_					0	0	0			REV__CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant	REV__CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	557.330078125	2	557.327996	1112.64144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.081	1	34.081	33.581	34.581	0								0	0	0	0.69648	1	12634	12634		19.257	2.1441	1		+		22636	10154	14231	14316	21762	21762					0.08962443723044089
NRRKKRRQREH	11	Unmodified	_NRRKKRRQREH_					0	0	0		SCN3A|p.K551Nfs*10|1|0.38|ENSG00000153253|chr2:165146757-165146757|T/-|frameshift_variant;SCN3A|p.N1922Ifs*19|1|0.09|ENSG00000153253|chr2:165090388-165090388|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;SCN3A|p.T1958Nfs*14|1|0.29|ENSG00000153253|chr2:165090280-165090281|-/T|frameshift_variant;SCN3A|p.T1958Qfs*16|1|0.28|ENSG00000153253|chr2:165090281-165090281|T/-|frameshift_variant;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	SCN3A|p.K551Nfs*10|1|0.38|ENSG00000153253|chr2:165146757-165146757|T/-|frameshift_variant	SCN3A|p.K551Nfs*10|1|0.38|ENSG00000153253|chr2:165146757-165146757|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	782.4609985351562	2	782.461804	1562.90906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.348	1	40.348	39.848	40.848	0								0	0	0	0.96149	1	15163	15163		0.30703	0.30703	1				22637	4187	14232	14317	21763	21763					0.1501176137414859
NRRRKKERKEK	11	Unmodified	_NRRRKKERKEK_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MSMS	HCT116MG_D190212_S2	2	509.60137939453125	3	509.981601	1526.92297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.855	1	48.711	48.211	49.211	-0.1437								0	0	0	0.95772	1	18679	18679		0.92553	0.47102	1				22638	3489	14233	14318	21764	21764					0.1805899408257119
NRRRRSLRRYP	11	Unmodified	_NRRRRSLRRYP_					0	0	0		nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-2|RELN	nc|ENSG00000189056|P78509-2|RELN	MSMS	HCT116MG_D190212_S2	2	765.4521484375	2	765.453448	1528.89234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.785	1	33.592	33.092	34.092	-0.19297								0	0	0	0.95954	1	12548	12548		1.3295	0.25807	1				22639	6015	14234	14319	21765	21765					0.1490526048821721
NRRSRQQRFHL	11	Unmodified	_NRRSRQQRFHL_					0	0	0			REV__ENST00000452508.6_1_11:108188209-108190710:+|nuORF	REV__ENST00000452508.6_1_11:108188209-108190710:+|nuORF	MSMS	HCT116MG_D190212_S1	1	499.94610595703125	3	499.94678	1496.81851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.485	1	14.485	13.985	14.985	0								0	0	0	0.96111	1	4744	4744		0.50596	0	1		+		22640	15721	14235	14320	21766	21766					0.08997292325875605
NRRSYSKMSR	10	Unmodified	_NRRSYSKMSR_					0	0	0		ENST00000447125.5_1_21:30566384-30566459:+|nuORF	ENST00000447125.5_1_21:30566384-30566459:+|nuORF	ENST00000447125.5_1_21:30566384-30566459:+|nuORF	MSMS	HCT116MG_D190212_S2	2	429.0886535644531	3	428.891172	1283.65169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6217	1	4.503	4.003	5.003	-0.11871								0	0	0	0.97045	1	1453	1453		0.15932	0	1				22641	7958	14236	14321	21767	21767					0.02120683385942357
NRSGGGGK	8	Unmodified	_NRSGGGGK_					0	0	0		ENST00000461967.1_1_22:39714348-39714516:-|nuORF	ENST00000461967.1_1_22:39714348-39714516:-|nuORF	ENST00000461967.1_1_22:39714348-39714516:-|nuORF	MSMS	HCT116MG_D190212_S4	4	366.6918640136719	2	366.691001	731.367449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.716	1	23.468	22.968	23.968	-0.24775								0	0	0	0.8837	1	8318	8318		2.5775	0	1				22642	8063	14237	14322	21768	21768					-0.008979543162354275
NRVIEEWWEWF	11	Unmodified	_NRVIEEWWEWF_					0	0	0			REV__ENST00000497314.1_1_1:150934548-150935668:+|nuORF	REV__ENST00000497314.1_1_1:150934548-150935668:+|nuORF	MSMS	HCT116MG_D190212_S4	4	797.3802490234375	2	797.377883	1592.74121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.757	1	28.416	27.916	28.916	-0.34059								0	0	0	0.95954	1	10355	10355		1.3295	0	1		+		22643	16099	14238	14323	21769	21769					-0.03144783453672062
NRWAKGVDAP	10	Unmodified	_NRWAKGVDAP_					0	0	0			REV__ENST00000526770.5_1_11:67376014-67378079:+|nuORF	REV__ENST00000526770.5_1_11:67376014-67378079:+|nuORF	MSMS	HCT116MG_D190212_S4	4	557.2927856445312	2	557.293622	1112.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.747	1	24.478	23.978	24.978	-0.26881								0	0	0	0.90023	1	8735	8735		15.847	1.0089	1		+		22644	16278	14239	14324	21770	21770					0.020907794233153254
NRYYYYHRQYR	11	Unmodified	_NRYYYYHRQYR_					0	0	0		ENST00000565031.1_1_16:2009625-2011290:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	MSMS	HCT116MG_D190212_S1	1	841.4026489257812	2	841.402755	1680.79096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.181	1	34.181	33.681	34.681	0								0	0	0	0.96208	1	12674	12674		0	0	1				22645	3698	14240	14325	21771	21771					-0.022206557250228798
NSALNPLLY	9	Unmodified	_NSALNPLLY_					0	0	0		ENSG00000116014|ENST00000234371|KISS1R	ENSG00000116014|ENST00000234371|KISS1R	ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	HCT116MG_D190212_S2	2	1004.5410766601562	1	1004.54112	1003.53385	0.50149	0.00050377	-0.39979	-0.00040161	0.1017	0.00010216	1004.540901885388	53.983	0.25729	53.794	53.687	53.945	-0.1894					7	4	2	0	0	0	0.0053819	1	20793	20793		134.3	0	1	13706000			22646	2497	14241	14326	21772	21772					0.03222054068953639
NSDGYGGNY	9	Unmodified	_NSDGYGGNY_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	HCT116MG_D190212_S1	1	946.3538208007812	1	946.353716	945.346439	0.75259	0.00071222	-0.0055947	-5.2946E-06	0.747	0.00070692	946.3536138251366	25.431	0.25994	25.431	25.249	25.509	0					6	4	2	0	0	0	0.0042464	1	9165	9165		147.06	94.791	1	4232700			22647	655	14242	14327	21773	21773					-0.12842009206417515
NSDGYGGNY	9	Unmodified	_NSDGYGGNY_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	HCT116MG_D190212_S2	2	946.3546752929688	1	946.353716	945.346439	0.65121	0.00061627	0.043464	4.1132E-05	0.69467	0.0006574	946.3535112002456	25.755	0.31073	25.386	25.239	25.55	-0.36914					11	5	3	0	0	0	0.0034607	1	9287	9287		163.04	104.36	1	29992000			22648	655	14242	14327	21774	21774					-0.12842009206417515
NSDGYGGNY	9	Unmodified	_NSDGYGGNY_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;DDX3Y|p.V655Gfs*2|1|0.09|ENSG00000067048|chrY:12918097-12918098|-/G|frameshift_variant;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	HCT116MG_D190212_S3	3	946.3544311523438	1	946.353716	945.346439	0.81244	0.00076886	0.037514	3.5502E-05	0.84995	0.00080436	946.3538569657762	25.7	0.36454	25.572	25.39	25.755	-0.12795					12	6	3	0	0	0	0.0057285	1	9193	9193		131.27	78.999	1	11297000			22649	655	14242	14327	21775	21775					-0.12842009206417515
NSDINSNHY	9	Unmodified	_NSDINSNHY_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant;AGTPBP1|p.K1079Nfs*10|1|0.38|ENSG00000135049|chr9:85579025-85579025|T/-|frameshift_variant	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	532.2259521484375	2	532.225602	1062.43665	0.40799	0.00021714	0.076446	4.0686E-05	0.48444	0.00025783	532.225643941795	21.142	0.32257	21.142	20.956	21.279	0					11	5	3	0	0	0	0.0012137	1	7427	7427		191.38	91.625	1	20046000			22650	3325	14243	14328	21776	21776					-0.09206959877997178
NSDINSNHY	9	Unmodified	_NSDINSNHY_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant;AGTPBP1|p.K1079Nfs*10|1|0.38|ENSG00000135049|chr9:85579025-85579025|T/-|frameshift_variant	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	532.2258911132812	2	532.225602	1062.43665	0.34919	0.00018585	-0.0079993	-4.2574E-06	0.34119	0.00018159	532.2255524709517	21.578	0.31171	21.193	21.063	21.375	-0.38503					11	5	3	0	0	0	0.0012137	1	7608	7608		191.38	101.98	1	84497000			22651	3325	14243	14328	21777	21777					-0.09206959877997178
NSDINSNHY	9	Unmodified	_NSDINSNHY_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant;AGTPBP1|p.K1079Nfs*10|1|0.38|ENSG00000135049|chr9:85579025-85579025|T/-|frameshift_variant	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	532.2257690429688	2	532.225602	1062.43665	0.31802	0.00016926	0.20575	0.0001095	0.52377	0.00027876	532.2256454200979	21.017	0.46896	21.052	20.871	21.339	0.034473					20	8	4	0	0	0	0.0034865	1	7304	7304		165.72	76.32	1	38167000			22652	3325	14243	14328	21778	21778					-0.09206959877997178
NSDINSNHY	9	Unmodified	_NSDINSNHY_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;AGTPBP1|p.S1080Ifs*2|1|0.29|ENSG00000135049|chr9:85579024-85579025|-/T|frameshift_variant;AGTPBP1|p.K1079Nfs*10|1|0.38|ENSG00000135049|chr9:85579025-85579025|T/-|frameshift_variant	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	HCT116MG_D190212_S4	4	532.2258911132812	2	532.225602	1062.43665	0.46882	0.00024952	-0.14684	-7.8154E-05	0.32197	0.00017136	532.2255644378855	21.359	0.36359	21.14	21.01	21.374	-0.21832					10	6	2	0	0	0	0.0034607	1	7370	7370		163.04	59.683	1	7752700			22653	3325	14243	14328	21779	21779					-0.09206959877997178
NSDLNNLLF	9	Unmodified	_NSDLNNLLF_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2669677734375	2	525.266739	1048.51892	0.49315	0.00025903	0.088189	4.6323E-05	0.58134	0.00030536	525.2666908407144	56.945	0.20896	56.766	56.635	56.844	-0.17904					7	3	3	0	0	0	0.090581	2	22002	21997;22002		60.074	16.216	1	36564000			22654	18106	14244	14329	21780;21781	21781					-0.00339437799038933
NSDLNNLLF	9	Unmodified	_NSDLNNLLF_					0	0	0		RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant;ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1049.5269775390625	1	1049.5262	1048.51892	0.76832	0.00080637	-0.099069	-0.00010398	0.66925	0.0007024	1049.525850604349	56.945	0.20896	56.766	56.635	56.844	-0.17904					8	3	3	0	0	0	0.0094709	1	22001	22001		114.65	18.538	1	33624000			22655	18106	14244	14329	21782	21782					-0.00339437799038933
NSDNNTIFV	9	Unmodified	_NSDNNTIFV_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000089280|P35637-2|FUS;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S1	1	1023.4746704101562	1	1023.47417	1022.46689	0.93684	0.00095883	-0.22746	-0.0002328	0.70938	0.00072603	1023.4738675711778	45.704	0.31468	45.704	45.503	45.818	0					10	5	2	0	0	0	0.016701	1	17320	17320		99.799	43.622	1	33591000			22656	1526;6659	14245	14330	21783	21783					-0.04344601212790167
NSDNNTIFV	9	Unmodified	_NSDNNTIFV_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000089280|P35637-2|FUS;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2407836914062	2	512.240721	1022.46689	0.45899	0.00023511	-0.15454	-7.9164E-05	0.30444	0.00015595	512.240623199285	45.686	0.36704	45.686	45.503	45.87	0					13	6	3	0	0	0	0.11363	1	17326	17326		55.503	36.246	1	29567000			22657	1526;6659	14245	14330	21784	21784					-0.04344601212790167
NSDNNTIFV	9	Unmodified	_NSDNNTIFV_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000089280|P35637-2|FUS;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S2	2	1023.4758911132812	1	1023.47417	1022.46689	0.61797	0.00063247	-0.22761	-0.00023295	0.39036	0.00039952	1023.4739657655879	45.687	0.61607	45.586	45.35	45.966	-0.1014					22	11	3	0	0	0	0.0048275	1	17367	17367		139.14	64.209	1	125760000			22658	1526;6659	14245	14330	21785	21785					-0.04344601212790167
NSDNNTIFV	9	Unmodified	_NSDNNTIFV_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000089280|P35637-2|FUS;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S2	2	512.240478515625	2	512.240721	1022.46689	0.24538	0.0001257	0.0087137	4.4635E-06	0.2541	0.00013016	512.2406063991838	45.688	0.513	45.586	45.402	45.915	-0.1014					23	9	3	0	0	0	0.034046	2	17382	17377;17382		82.529	57.13	1	77807000			22659	1526;6659	14245	14330	21786;21787	21787					-0.04344601212790167
NSDNNTIFV	9	Unmodified	_NSDNNTIFV_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000089280|P35637-2|FUS;TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2406616210938	2	512.240721	1022.46689	0.37131	0.0001902	-0.095844	-4.9095E-05	0.27547	0.00014111	512.2406828941364	45.972	0.29133	45.66	45.512	45.803	-0.31146					9	6	2	0	0	0	0.041798	1	17248	17248		78.728	55.992	1	11007000			22660	1526;6659	14245	14330	21788	21788					-0.04344601212790167
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MSMS	HCT116MG_D190212_S1	1	511.76708984375	2	511.766906	1021.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.796	1	44.796	44.296	45.296	0								0	0	0	0.53872	1	16956	16956		26.884	8.7487	1				22661	3437	14246	14331	21789	21789					0.009359819208270892
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	HCT116MG_D190212_S2	2	511.76666259765625	2	511.766906	1021.51926	0.49937	0.00025556	0.24296	0.00012434	0.74233	0.0003799	511.7669714860964	44.778	0.62589	44.693	44.325	44.951	-0.084801					29	11	4	0	0	0	0.0051486	2	16987	16935;16987		136.33	68.253	1	41488000			22662	3437	14246	14331	21790;21791	21791					0.009359819208270892
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	HCT116MG_D190212_S3	3	511.7670593261719	2	511.766906	1021.51926	0.30695	0.00015709	0.33589	0.0001719	0.64284	0.00032899	511.76687271665384	44.964	0.40948	44.654	44.532	44.941	-0.30927					12	7	2	0	0	0	0.041798	1	16854	16854		78.728	28.795	1	3350900			22663	3437	14246	14331	21792	21792					0.009359819208270892
NSDPPRYQF	9	Unmodified	_NSDPPRYQF_					0	0	0		ENSG00000177689|ENST00000356790|MAGEB10;MAGEB1|p.P261H|1|0.33|ENSG00000214107|chrX:30251275-30251275|C/A|missense_variant;ENSG00000120289|ENST00000378982|MAGEB4;ENSG00000214107|ENST00000397548|MAGEB1	ENSG00000177689|ENST00000356790|MAGEB10	ENSG00000177689|ENST00000356790|MAGEB10	MULTI-SECPEP	HCT116MG_D190212_S2	2	562.3090209960938	2	562.261988	1122.50942	0.40288	0.00022653	2.4528	0.0013791	2.8557	0.0016057	562.2632803830601	19.647	0.93499	19.272	18.934	19.869	-0.37503					24	17	2	0	0	0	0.20889	1	6881	6881		30.637	13.524	1	7159000			22664	5469	14247	14332	21793	21793					-0.046932060845847445
NSDRNIRY	8	Unmodified	_NSDRNIRY_					0	0	0		AP1G2|p.N690Tfs*6|1|0.41|ENSG00000213983|chr14:23560343-23560343|T/-|frameshift_variant;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;AP1G2|p.L755Cfs*3|1|0.18|ENSG00000213983|chr14:23559844-23559844|G/-|frameshift_variant;ENSG00000213983|ENST00000397120|AP1G2	AP1G2|p.N690Tfs*6|1|0.41|ENSG00000213983|chr14:23560343-23560343|T/-|frameshift_variant	AP1G2|p.N690Tfs*6|1|0.41|ENSG00000213983|chr14:23560343-23560343|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2598876953125	2	519.259779	1036.50501	0.21749	0.00011294	0.11595	6.0209E-05	0.33345	0.00017315	519.2598344935747	21.474	0.31099	21.091	20.91	21.221	-0.38288					12	5	3	0	0	0	0.29007	1	7560	7560		60.074	10.141	1	55073000			22665	147	14248	14333	21794	21794					-0.011786705074882775
NSDSPQPLHQ	10	Unmodified	_NSDSPQPLHQ_					0	0	0		ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	561.757080078125	2	561.762352	1121.51015	0.26713	0.00015007	-0.54253	-0.00030477	-0.27539	-0.00015471	561.7620908232107	19.354	0.67705	19.354	19.027	19.704	0					16	12	2	0	0	0	0.71224	1	6642	6642		19.362	0.10495	1	2604600			22666	6759	14249	14334	21795	21795					-0.04574411435510228
NSDSQAEAHY	10	Unmodified	_NSDSQAEAHY_					0	0	0		ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant;nc|ENSG00000144331|Q569K4-3|ZNF385B;nc|ENSG00000144331|Q569K4-2|ZNF385B;nc|ENSG00000144331|Q569K4-5|ZNF385B;nc|ENSG00000144331|Q569K4|ZNF385B;ENSG00000144331|ENST00000410066|ZNF385B	ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant	ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	561.228271484375	2	561.228342	1120.44213	0.27461	0.00015412	-0.23886	-0.00013406	0.035752	2.0065E-05	561.2279476765345	19.228	0.26019	19.228	19.027	19.287	0					5	4	2	0	0	0	0.0084034	1	6674	6674		157.8	57.704	1	3109900			22667	3859	14250	14335	21796	21796					-0.11327281086187213
NSDSQAEAHY	10	Unmodified	_NSDSQAEAHY_					0	0	0		ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant;nc|ENSG00000144331|Q569K4-3|ZNF385B;nc|ENSG00000144331|Q569K4-2|ZNF385B;nc|ENSG00000144331|Q569K4-5|ZNF385B;nc|ENSG00000144331|Q569K4|ZNF385B;ENSG00000144331|ENST00000410066|ZNF385B	ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant	ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	561.2283325195312	2	561.228342	1120.44213	0.40171	0.00022545	-0.21081	-0.00011831	0.1909	0.00010714	561.2281547348404	19.7	0.36334	19.324	19.194	19.558	-0.37503					8	6	2	0	0	0	0.0036092	1	6869	6869		171.09	140.45	1	17690000			22668	3859	14250	14335	21797	21797					-0.11327281086187213
NSDSQAEAHY	10	Unmodified	_NSDSQAEAHY_					0	0	0		ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant;nc|ENSG00000144331|Q569K4-3|ZNF385B;nc|ENSG00000144331|Q569K4-2|ZNF385B;nc|ENSG00000144331|Q569K4-5|ZNF385B;nc|ENSG00000144331|Q569K4|ZNF385B;ENSG00000144331|ENST00000410066|ZNF385B	ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant	ZNF385B|p.L284Ifs*25|1|0.14|ENSG00000144331|chr2:179446591-179446592|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	561.2280883789062	2	561.228342	1120.44213	0.3559	0.00019974	-1.1589	-0.0006504	-0.80298	-0.00045066	561.2276317556928	18.988	0.15615	19.057	18.927	19.083	0.069159					4	2	2	0	0	0	0.59588	1	6493	6493		28.495	17	1	4657800			22669	3859	14250	14335	21798	21798					-0.11327281086187213
NSDTHSSTF	9	Unmodified	_NSDTHSSTF_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	MULTI-MSMS	HCT116MG_D190212_S1	1	498.2070007324219	2	498.206878	994.399203	0.37302	0.00018584	0.044785	2.2312E-05	0.4178	0.00020815	498.2067682036597	22.406	0.36511	22.406	22.272	22.637	0					13	6	3	0	0	0	0.0082095	1	7943	7943		117.76	68.206	1	16385000			22670	2300	14251	14336	21799	21799					-0.09822051143601129
NSDTHSSTF	9	Unmodified	_NSDTHSSTF_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	MULTI-MSMS	HCT116MG_D190212_S2	2	498.2072448730469	2	498.206878	994.399203	0.34304	0.0001709	0.24867	0.00012389	0.5917	0.00029479	498.2068993803665	22.929	0.57248	22.544	22.258	22.83	-0.3852					21	10	4	0	0	0	0.0050238	1	8133	8133		137.42	81.921	1	61209000			22671	2300	14251	14336	21800	21800					-0.09822051143601129
NSDTHSSTF	9	Unmodified	_NSDTHSSTF_					0	0	0		nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENST00000405405.2_1_6:80662724-80663060:-|nuORF;ENST00000466525.1_1_12:6646524-6647333:+|nuORF	nc|ENSG00000111640|P04406-2|GAPDH	nc|ENSG00000111640|P04406-2|GAPDH	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2070617675781	2	498.206878	994.399203	0.36145	0.00018008	0.085123	4.2409E-05	0.44657	0.00022248	498.2068947359609	22.223	0.46902	22.224	22.042	22.511	0.00074577					15	8	3	0	0	0	0.0050238	1	7787	7787		137.42	84.02	1	12149000			22672	2300	14251	14336	21801	21801					-0.09822051143601129
NSDTNIRWNNY	11	Unmodified	_NSDTNIRWNNY_					0	0	0		nc|ENSG00000137492|O43422-2|THAP12;ENSG00000137492|ENST00000260045|THAP12	nc|ENSG00000137492|O43422-2|THAP12	nc|ENSG00000137492|O43422-2|THAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	698.815673828125	2	698.815647	1395.61674	0.61481	0.00042964	0.20895	0.00014602	0.82377	0.00057566	698.8156416775279	38.256	0.25865	38.163	38.011	38.27	-0.09301					9	4	3	0	0	0	6.0687E-41	1	14382	14382		280.07	251.57	1	21063000			22673	3481	14252	14337	21802	21802					-0.06524280940971039
NSDTNIRWNNY	11	Unmodified	_NSDTNIRWNNY_					0	0	0		nc|ENSG00000137492|O43422-2|THAP12;ENSG00000137492|ENST00000260045|THAP12	nc|ENSG00000137492|O43422-2|THAP12	nc|ENSG00000137492|O43422-2|THAP12	MSMS	HCT116MG_D190212_S3	3	698.7483520507812	2	698.815647	1395.61674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.462	1	38.161	37.661	38.661	-0.30137								0	0	0	1.5735E-32	1	14249	14249		210.93	181.09	1				22674	3481	14252	14337	21803	21803					-0.06524280940971039
NSDTNIRWNNY	11	Unmodified	_NSDTNIRWNNY_					0	0	0		nc|ENSG00000137492|O43422-2|THAP12;ENSG00000137492|ENST00000260045|THAP12	nc|ENSG00000137492|O43422-2|THAP12	nc|ENSG00000137492|O43422-2|THAP12	MSMS	HCT116MG_D190212_S3	3	698.81591796875	2	698.815647	1395.61674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.538	1	38.237	37.737	38.737	-0.30137								0	0	0	4.5167E-16	1	14279	14279		173.14	141.87	1				22675	3481	14252	14337	21804	21804					-0.06524280940971039
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	HCT116MG_D190212_S1	1	1024.4949951171875	1	1024.49457	1023.48729	0.78248	0.00080165	0.038645	3.9592E-05	0.82113	0.00084124	1024.494654973404	49.053	0.31212	49.053	48.871	49.183	0					11	5	3	0	0	0	0.0053819	1	18689	18689		134.3	70.335	1	64403000			22676	4593	14253	14338	21805	21805					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	HCT116MG_D190212_S1	1	512.7506713867188	2	512.750921	1023.48729	0.30649	0.00015716	-0.44484	-0.00022809	-0.13835	-7.0938E-05	512.7508135138204	49.057	0.20863	49.057	48.922	49.131	0					5	3	2	0	0	0	0.16306	1	18701	18701		45.7	5.7423	1	26454000			22677	4593	14253	14338	21806	21806					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	HCT116MG_D190212_S2	2	1024.4954833984375	1	1024.49457	1023.48729	0.52294	0.00053575	0.026015	2.6652E-05	0.54896	0.0005624	1024.4943930391244	49.164	0.30331	49.01	48.884	49.187	-0.15405					11	5	3	0	0	0	0.0042464	1	18812	18812		147.06	75.926	1	95370000			22678	4593	14253	14338	21807	21807					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	HCT116MG_D190212_S3	3	1024.4947509765625	1	1024.49457	1023.48729	0.5395	0.00055271	0.20349	0.00020847	0.74298	0.00076118	1024.4946088115585	49.369	0.4192	49.053	48.87	49.289	-0.31596					20	7	4	0	0	0	0.0053819	1	18580	18580		134.3	72.938	1	43365000			22679	4593	14253	14338	21808	21808					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	HCT116MG_D190212_S3	3	513.2525634765625	2	512.750921	1023.48729	0.1216	6.2349E-05	0.16396	8.4072E-05	0.28556	0.00014642	512.7508978311188	49.372	0.47123	49.056	48.87	49.341	-0.31596					19	8	3	0	0	0	0.0053819	1	18587	18587		134.3	72.938	1	42198000			22680	4593	14253	14338	21809	21809					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	HCT116MG_D190212_S4	4	512.7509765625	2	512.750921	1023.48729	0.07655	3.9251E-05	0.45063	0.00023106	0.52718	0.00027031	512.7509089754182	49.439	0.29667	49.077	48.921	49.218	-0.36213					13	5	3	0	0	0	0.0057285	1	18324	18324		131.27	66.033	1	20434000			22681	4593	14253	14338	21810	21810					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MSMS	HCT116MG_D190212_S4	4	1024.49560546875	1	1024.49457	1023.48729	0.45821	0.00046944	0.20192	0.00020686	0.66013	0.0006763	1024.4945246097907	49.42	0.29667	49.058	48.921	49.218	-0.36213					13	5	3	0	0	0	0.0034365	1	18327	18327		160.52	82.367	1	15194000			22682	4593	14253	14338	21811	21811					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-3|HIPK1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	512.750921	1023.48729	0.18463	9.4672E-05	-0.65043	-0.00033351	-0.4658	-0.00023884	512.7505631938972	49.185	0.25259	49.031	48.834	49.086	-0.15405	-0.0241	-0.00079929	NaN	134.3	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45272000			22683	4593	14253	14338							-0.023514305530056845
NSDVVEQIY	9	Unmodified	_NSDVVEQIY_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7562866210938	2	533.756204	1065.49785	0.6964	0.00037171	-0.39515	-0.00021091	0.30125	0.00016079	533.755931434069	41.459	0.20869	41.459	41.341	41.55	0					5	3	2	0	0	0	0.55732	1	15645	15645		13.615	2.7909	1	6703300			22684	3914	14254	14339	21812	21812					-0.03227447898552782
NSDWHLVNY	9	Unmodified	_NSDWHLVNY_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;DOCK9|p.Y339Lfs*10|1|0.12|ENSG00000088387|chr13:98904651-98904652|-/A|frameshift_variant	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-MSMS	HCT116MG_D190212_S1	1	574.2621459960938	2	574.261988	1146.50942	0.4219	0.00024228	0.12121	6.9606E-05	0.54311	0.00031188	574.262047573763	45.454	0.25985	45.454	45.295	45.555	0					8	4	3	0	0	0	0.025331	2	17235	17220;17235		91.085	54.958	1	10500000			22685	725	14255	14340	21813;21814	21814					-0.05797206084571371
NSDWHLVNY	9	Unmodified	_NSDWHLVNY_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;DOCK9|p.Y339Lfs*10|1|0.12|ENSG00000088387|chr13:98904651-98904652|-/A|frameshift_variant	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-MSMS	HCT116MG_D190212_S2	2	574.26220703125	2	574.261988	1146.50942	0.31173	0.00017901	0.2154	0.0001237	0.52712	0.00030271	574.2620106519745	45.477	0.25767	45.385	45.205	45.462	-0.092472					12	4	3	0	0	0	0.069943	1	17290	17290		64.927	30.525	1	64056000			22686	725	14255	14340	21815	21815					-0.05797206084571371
NSEEGSELDL	10	Unmodified	_NSEEGSELDL_					0	0	0			REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	REV__ZBTB11|p.E974Nfs*14|1|0.1|ENSG00000066422|chr3:101651408-101651408|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	546.7409057617188	2	546.738208	1091.46186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.359	1	16.017	15.517	16.517	-0.34183								0	0	0	0.7978	1	5500	5500		29.082	0	1		+		22687	10717	14256	14341	21816	21816					-0.08020949866067895
NSEEHSAKY	9	Unmodified	_NSEEHSAKY_					0	0	0		nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.19091796875	2	532.735803	1063.45705	0.31741	0.0001691	0.79832	0.00042529	1.1157	0.00059439	533.237814264536	12.067	0.12283	11.777	11.697	11.82	-0.28953					5	3	2	0	0	0	0.26676	1	3939	3939		2.0598	0	1	264360			22688	4998	14257	14342	21817	21817					-0.07213789218167221
NSEEMKEAYY	10	Unmodified	_NSEEMKEAYY_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF;ENST00000581339.1_1_18:21053400-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	632.2642211914062	2	632.263536	1262.51252	0.70598	0.00044637	-0.069441	-4.3905E-05	0.63654	0.00040246	632.2635812065657	30.316	0.3049	30.316	30.146	30.451	0					11	5	3	0	0	0	1.2126E-06	2	11119	11090;11119		208.35	148.28	1	18199000			22689	1806	14258	14343	21818;21819	21819					-0.10823743812716202
NSEEMKEAYY	10	Unmodified	_NSEEMKEAYY_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF;ENST00000581339.1_1_18:21053400-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	632.2639770507812	2	632.263536	1262.51252	0.24563	0.0001553	-0.18235	-0.00011529	0.063283	4.0012E-05	632.2634629419118	30.543	0.35948	30.259	30.079	30.439	-0.28453					15	6	3	0	0	0	3.8937E-11	1	11244	11244		230.41	170.33	1	102040000			22690	1806	14258	14343	21820	21820					-0.10823743812716202
NSEEMKEAYY	10	Unmodified	_NSEEMKEAYY_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF;ENST00000581339.1_1_18:21053400-21057068:+|nuORF	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	632.2631225585938	2	632.263536	1262.51252	0.40016	0.00025301	0.21506	0.00013598	0.61523	0.00038899	632.2636465764256	30.752	0.24665	30.491	30.358	30.604	-0.26071					9	4	3	0	0	0	0.64623	1	11247	11247		24.882	16.726	1	8791900			22691	1806	14258	14343	21821	21821					-0.10823743812716202
NSEERGENTSY	11	Unmodified	_NSEERGENTSY_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-MSMS	HCT116MG_D190212_S1	1	643.2672119140625	2	643.268195	1284.52184	0.71044	0.00045701	-1.0507	-0.0006759	-0.34028	-0.00021889	643.2672629508002	18.272	0.15648	18.272	18.193	18.35	0					6	2	3	0	0	0	0.22509	1	6295	6295		72.59	44.961	1	3205800			22692	2805	14259	14344	21822	21822					-0.1090425920283451
NSEERGENTSY	11	Unmodified	_NSEERGENTSY_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-MSMS	HCT116MG_D190212_S2	2	643.2748413085938	2	643.268195	1284.52184	0.2386	0.00015348	-0.15	-9.6491E-05	0.088594	5.699E-05	643.2678784199018	18.762	0.20775	18.399	18.269	18.477	-0.36325					7	3	3	0	0	0	0.0014186	1	6463	6463		153.7	111.74	1	9286600			22693	2805	14259	14344	21823	21823					-0.1090425920283451
NSEESEKE	8	Unmodified	_NSEESEKE_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MSMS	HCT116MG_D190212_S1	1	476.1985168457031	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4061	1	8.4061	7.9061	8.9061	0								0	0	0	0.8837	1	2542	2542		0.79363	0	1				22694	6346	14260	14345	21824	21824					-0.09429177100366815
NSELGSETRY	10	Unmodified	_NSELGSETRY_					0	0	0		nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MULTI-MSMS	HCT116MG_D190212_S1	1	578.2677001953125	2	578.267467	1154.52038	0.43522	0.00025167	0.087096	5.0365E-05	0.52231	0.00030204	578.2675332590386	26.92	0.46859	26.92	26.709	27.178	0					20	8	4	0	0	0	0.0069584	3	9736	9708;9736;9828		162.31	51.762	1	110100000			22695	4595	14261	14346	21825;21826;21827	21826					-0.05069848500943408
NSELGSETRY	10	Unmodified	_NSELGSETRY_					0	0	0		nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MULTI-MSMS	HCT116MG_D190212_S2	2	578.2678833007812	2	578.267467	1154.52038	0.67722	0.00039161	0.14183	8.2015E-05	0.81905	0.00047363	578.2675558743412	27.351	0.6217	26.999	26.766	27.387	-0.35254					30	11	5	0	0	0	0.00046105	1	9911	9911		187.14	65.608	1	423430000			22696	4595	14261	14346	21828	21828					-0.05069848500943408
NSELGSETRY	10	Unmodified	_NSELGSETRY_					0	0	0		nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MULTI-MSMS	HCT116MG_D190212_S3	3	578.2678833007812	2	578.267467	1154.52038	0.47437	0.00027431	0.080333	4.6454E-05	0.55471	0.00032077	578.267469992509	27.205	0.41657	27.036	26.859	27.276	-0.16933					19	7	3	0	0	0	0.0057099	1	9783	9783		165.58	83.055	1	50425000			22697	4595	14261	14346	21829	21829					-0.05069848500943408
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	HCT116MG_D190212_S1	1	562.2728271484375	2	562.272552	1122.53055	0.48507	0.00027274	-0.049837	-2.8022E-05	0.43523	0.00024472	562.2724792604984	34.89	0.26015	34.89	34.753	35.013	0					9	4	3	0	0	0	0.0029864	1	12974	12974		181.69	81.892	1	21872000			22698	2004	14262	14347	21830	21830					-0.025812407757030087
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	HCT116MG_D190212_S2	2	562.2725830078125	2	562.272552	1122.53055	0.51957	0.00029214	0.23941	0.00013461	0.75898	0.00042675	562.2726908782781	34.945	0.41478	34.787	34.606	35.02	-0.15834					19	7	3	0	0	0	0.0035417	1	13005	13005		171.46	82.51	1	147010000			22699	2004	14262	14347	21831	21831					-0.025812407757030087
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	HCT116MG_D190212_S3	3	562.7732543945312	2	562.272552	1122.53055	0.54077	0.00030406	-0.12126	-6.8181E-05	0.41951	0.00023588	562.2724611387031	35.178	0.31099	34.879	34.698	35.009	-0.29922					14	5	3	0	0	0	0.0035136	1	12973	12973		168.54	68.739	1	45292000			22700	2004	14262	14347	21832	21832					-0.025812407757030087
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;MYH14|p.L1950Sfs*14|1|0.34|ENSG00000105357|chr19:50309646-50309646|C/-|frameshift_variant;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	HCT116MG_D190212_S4	4	562.272705078125	2	562.272552	1122.53055	0.32374	0.00018203	-0.090767	-5.1036E-05	0.23298	0.000131	562.2725141640242	35.265	0.30861	34.879	34.698	35.006	-0.38606					10	5	3	0	0	0	0.0082095	1	12931	12931		117.76	39.033	1	13842000			22701	2004	14262	14347	21833	21833					-0.025812407757030087
NSELSCQLY	9	Unmodified	_NSELSCQLY_					0	0	0		ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000581920.1_1_18:667730-672994:+|nuORF	ENST00000581920.1_1_18:667730-672994:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1056.467041015625	1	1056.46664	1055.45936	0.57934	0.00061205	0.047875	5.0578E-05	0.62721	0.00066263	1056.4664259006381	45.426	0.30935	45.334	45.153	45.462	-0.092472					11	5	3	0	0	0	0.0034935	1	17279	17279		166.45	95.314	1	38872000			22702	5437	14263	14348	21834	21834					-0.06615076804746423
NSELSCQLY	9	Unmodified	_NSELSCQLY_					0	0	0		ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000581920.1_1_18:667730-672994:+|nuORF	ENST00000581920.1_1_18:667730-672994:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1056.46728515625	1	1056.46664	1055.45936	0.71408	0.0007544	-0.29511	-0.00031178	0.41897	0.00044262	1056.4663504658424	45.642	0.36421	45.331	45.148	45.512	-0.31094					15	6	3	0	0	0	0.0034935	1	17087	17087		166.45	95.314	1	15699000			22703	5437	14263	14348	21835	21835					-0.06615076804746423
NSELSCQLY	9	Unmodified	_NSELSCQLY_					0	0	0		ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000581920.1_1_18:667730-672994:+|nuORF	ENST00000581920.1_1_18:667730-672994:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	528.7368774414062	2	528.736957	1055.45936	0.52162	0.0002758	0.097999	5.1816E-05	0.61961	0.00032761	528.736843964318	45.642	0.36421	45.331	45.148	45.512	-0.31094					12	6	3	0	0	0	0.01405	1	17109	17109		103.35	58.946	1	10368000			22704	5437	14263	14348	21836	21836					-0.06615076804746423
NSEPETLEY	9	Unmodified	_NSEPETLEY_					0	0	0		nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF;DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant	nc|ENSG00000077044|Q16760-2|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	MULTI-MSMS	HCT116MG_D190212_S3	3	1081.467041015625	1	1081.46841	1080.46113	0.37754	0.00040829	-0.36292	-0.00039249	0.014615	1.5806E-05	1081.4678581044768	36.96	0.41602	36.658	36.405	36.821	-0.30113					11	7	2	0	0	0	0.0035731	1	13686	13686		174.73	96.578	1	3199400			22705	1345	14264	14349	21837	21837					-0.07587744515149097
NSEPETLEY	9	Unmodified	_NSEPETLEY_					0	0	0		nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF;DGKD|p.G855Vfs*48|1|0.29|ENSG00000077044|chr2:233457306-233457306|G/-|frameshift_variant	nc|ENSG00000077044|Q16760-2|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1081.46841	1080.46113	0.50001	0.00054074	0.024676	2.6687E-05	0.52468	0.00056743	1081.468761539747	36.709	0.36083	36.594	36.447	36.808	-0.11479	-0.032081	0.0003453	NaN	174.73	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9735900			22706	1345	14264	14349							-0.07587744515149097
NSFEAAFGL	9	Unmodified	_NSFEAAFGL_					0	0	0			REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	MSMS	HCT116MG_D190212_S1	1	478.2639465332031	2	478.229625	954.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.269	1	23.269	22.769	23.769	0								0	0	0	0.74436	1	8279	8279		16.942	0	1		+		22707	13376	14265	14350	21838	21838					-0.03434780890563616
NSFFHLQKD	9	Unmodified	_NSFFHLQKD_					0	0	0			REV__ENST00000460633.1_1_6:32614553-32614673:+|nuORF	REV__ENST00000460633.1_1_6:32614553-32614673:+|nuORF	MSMS	HCT116MG_D190212_S1	1	379.24822998046875	3	379.189212	1134.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.373	1	62.373	61.873	62.873	0								0	0	0	0.76973	1	24084	24084		0.96228	0	1		+		22708	15773	14266	14351	21839	21839					-0.016083291878430828
NSFFHLQKD	9	Unmodified	_NSFFHLQKD_					0	0	0			REV__ENST00000460633.1_1_6:32614553-32614673:+|nuORF	REV__ENST00000460633.1_1_6:32614553-32614673:+|nuORF	MSMS	HCT116MG_D190212_S1	1	379.19049072265625	3	379.189212	1134.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.869	1	62.869	62.369	63.369	0								0	0	0	0.76973	1	24284	24284		0.96228	0	1		+		22709	15773	14266	14351	21840	21840					-0.016083291878430828
NSGKRRIV	8	Unmodified	_NSGKRRIV_					0	0	0		CNOT2-GPCPD1|1|fusion;ENSG00000125772|ENST00000379019|GPCPD1	CNOT2-GPCPD1|1|fusion	CNOT2-GPCPD1|1|fusion	MULTI-MSMS	HCT116MG_D190212_S1	1	465.7872009277344	2	465.2856	928.556647	0.024542	1.1419E-05	0.131	6.0954E-05	0.15554	7.2373E-05	465.2856082442169	50.24	0.77243	50.24	49.802	50.574	0					28	14	3	0	0	0	0.8672	1	19114	19114		2.3027	0	1	101160000			22710	499	14267	14352	21841	21841					0.08951117977096601
NSGKRRIV	8	Unmodified	_NSGKRRIV_					0	0	0		CNOT2-GPCPD1|1|fusion;ENSG00000125772|ENST00000379019|GPCPD1	CNOT2-GPCPD1|1|fusion	CNOT2-GPCPD1|1|fusion	MULTI-MSMS	HCT116MG_D190212_S1	1	465.28497314453125	2	465.2856	928.556647	0.17788	8.2767E-05	0.18472	8.5948E-05	0.36261	0.00016871	465.285645317855	52.257	1.0847	52.257	51.451	52.536	0					29	20	3	0	0	0	0.8672	1	19928	19928		2.3027	0	1	36001000			22711	499	14267	14352	21842	21842					0.08951117977096601
NSGKRRIV	8	Unmodified	_NSGKRRIV_					0	0	0		CNOT2-GPCPD1|1|fusion;ENSG00000125772|ENST00000379019|GPCPD1	CNOT2-GPCPD1|1|fusion	CNOT2-GPCPD1|1|fusion	MULTI-MSMS	HCT116MG_D190212_S4	4	465.28564453125	2	465.2856	928.556647	-0.17879	-8.3187E-05	0.10238	4.7636E-05	-0.076407	-3.5551E-05	465.2855696459765	49.312	1.9162	48.947	48.494	50.41	-0.36482					107	40	5	0	0	0	0.8672	1	18657	18657		2.3027	0	1	675780000			22712	499	14267	14352	21843	21843					0.08951117977096601
NSHSKSCHY	9	Unmodified	_NSHSKSCHY_					0	0	0		USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.V1147Gfs*56|1|0.38|ENSG00000042781|chr1:216199998-216199999|-/C|frameshift_variant;nc|ENSG00000042781|O75445-2|USH2A;USH2A|p.F1618Lfs*17|1|0.36|ENSG00000042781|chr1:216089044-216089044|A/-|frameshift_variant	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	531.2869873046875	2	531.724715	1061.43488	0.40482	0.00021525	-0.64958	-0.0003454	-0.24476	-0.00013015	531.7242579245823	49.433	0.31437	49.117	48.87	49.184	-0.31596					8	5	2	0	0	0	0.24195	1	18573	18573		13.906	0.86358	1	2908100			22713	1012	14268	14353	21844	21844					-0.0933829216758113
NSITHGSFS	9	Unmodified	_NSITHGSFS_					0	0	0		RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	475.2647705078125	2	475.222331	948.430109	0.33604	0.00015969	-0.51976	-0.000247	-0.18373	-8.7311E-05	475.2219291002206	26.16	0.31283	26.032	25.859	26.172	-0.12795					7	5	2	0	0	0	0.2336	1	9305	9305		17.113	0.1706	1	4964800			22714	2552	14269	14354	21845	21845					-0.04616853038703539
NSITHGSFS	9	Unmodified	_NSITHGSFS_					0	0	0		RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	475.222331	948.430109	0.29047	0.00013804	-0.91512	-0.00043488	-0.62465	-0.00029685	475.2218840521136	25.901	0.2091	25.901	25.77	25.98	0	-0.093654	-0.00016041	NaN	17.113	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4120400			22715	2552	14269	14354							-0.04616853038703539
NSLIPIITKY	10	Unmodified	_NSLIPIITKY_					0	0	0			REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	REV__tr|U7STQ9|U7STQ9_FUSNUTrmHfamilyRNAmethyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01153PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	581.3472290039062	2	581.347532	1160.68051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.767	1	38.466	37.966	38.966	-0.30137								0	0	0	0.94339	1	14372	14372		6.2058	1.8765	1		+		22716	17807	14270	14355	21846	21846					0.10659731234045466
NSLKFTELV	9	Unmodified	_NSLKFTELV_					0	0	0		ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	ENSG00000010282|ENST00000441594|HHATL	MULTI-SECPEP	HCT116MG_D190212_S1	1	526.2749633789062	2	525.795132	1049.57571	0.14288	7.5128E-05	0.7541	0.0003965	0.89699	0.00047163	525.795360465481	48.229	0.15471	48.229	48.1	48.254	0					4	2	2	0	0	0	0.21474	1	18306	18306		22.736	4.5899	1	17102000			22717	877	14271	14356	21847	21847					0.05290609757457787
NSLRALIKYLL	11	Unmodified	_NSLRALIKYLL_					0	0	0		tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	tr|U7ST72|U7ST72_FUSNU2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gpmAPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	435.35791015625	3	435.274729	1302.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.468	1	58.181	57.681	58.681	-0.28692								0	0	0	0.9613	1	21976	21976		0.40827	0	1				22718	18429	14272	14357	21848	21848					0.16306773316432555
NSNKYWKIFYY	11	Unmodified	_NSNKYWKIFYY_					0	0	0			REV__DSCAM|p.S534F|1|0.27|ENSG00000171587|chr21:40338283-40338283|G/A|missense_variant	REV__DSCAM|p.S534F|1|0.27|ENSG00000171587|chr21:40338283-40338283|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	763.3786010742188	2	763.377352	1524.74015	1.2772	0.00097502	0.48579	0.00037084	1.763	0.0013459	763.3778347603946	27.403	0.41393	27.06	26.881	27.295	-0.34236					13	7	4	0	0	0	0.71887	1	9958	9958		18.373	3.9677	1	53175000	+		22719	10414	14273	14358	21849	21849					-0.0012299782256377512
NSNKYWKIFYY	11	Unmodified	_NSNKYWKIFYY_					0	0	0			REV__DSCAM|p.S534F|1|0.27|ENSG00000171587|chr21:40338283-40338283|G/A|missense_variant	REV__DSCAM|p.S534F|1|0.27|ENSG00000171587|chr21:40338283-40338283|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	763.377352	1524.74015	0.78798	0.00060153	0.68728	0.00052465	1.4753	0.0011262	763.3780689251997	26.996	0.31213	26.996	26.813	27.125	0	-0.032227	0.00024326	NaN	18.373	11	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15355000	+		22720	10414	14273	14358							-0.0012299782256377512
NSNKYWKIFYY	11	Unmodified	_NSNKYWKIFYY_					0	0	0			REV__DSCAM|p.S534F|1|0.27|ENSG00000171587|chr21:40338283-40338283|G/A|missense_variant	REV__DSCAM|p.S534F|1|0.27|ENSG00000171587|chr21:40338283-40338283|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	763.377352	1524.74015	1.2772	0.00097502	0.48579	0.00037084	1.763	0.0013459	763.3778347603946	27.403	0.41393	27.06	26.881	27.295	-0.34236	0.032227	-6.4369E-05	NaN	18.373	13	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53175000	+		22721	10414	14273	14358							-0.0012299782256377512
NSNVSFNVGTR	11	Unmodified	_NSNVSFNVGTR_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-8|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-8|KMT2E	MSMS	HCT116MG_D190212_S1	1	597.7948608398438	2	597.796726	1193.5789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.348	1	38.348	37.848	38.848	0								0	0	0	0.85129	1	14355	14355		26.268	4.7312	1		+		22722	10475	14274	14359	21850	21850					-0.010147471358095572
NSPSETRCPGP	11	Unmodified	_NSPSETRCPGP_					0	0	0			REV__ENSG00000130997|ENST00000511885|POLN	REV__ENSG00000130997|ENST00000511885|POLN	MULTI-MSMS	HCT116MG_D190212_S3	3	572.75634765625	2	572.756212	1143.49787	0.42164	0.0002415	-0.048928	-2.8024E-05	0.37271	0.00021347	572.7562534736595	15.963	0.88451	16.048	15.56	16.445	0.085423					35	16	4	0	0	0	0.71419	1	5177	5177		16.566	0.41677	1	9672400	+		22723	11950	14275	14360	21851	21851					-0.06813771170209293
NSQGQLIY	8	Unmodified	_NSQGQLIY_					0	0	0		nc|ENSG00000148834|P78417-3|GSTO1;ENSG00000148834|ENST00000369713|GSTO1;ENST00000504733.1_1_3:130546621-130547209:+|nuORF;nc|ENSG00000148834|P78417-2|GSTO1	nc|ENSG00000148834|P78417-3|GSTO1	nc|ENSG00000148834|P78417-3|GSTO1	MSMS	HCT116MG_D190212_S3	3	461.7347717285156	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.237	1	29.015	28.515	29.515	-0.22195								0	0	0	0.8837	1	10614	10614		10.074	0.6908	1				22724	4034	14276	14361	21852	21852					-0.008273785162828062
NSQLCKCTM	9	Unmodified	_NSQLCKCTM_					0	0	0			REV__ENST00000359042.6_1_17:71243939-71244086:+|nuORF	REV__ENST00000359042.6_1_17:71243939-71244086:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	513.7216186523438	2	514.222105	1026.42966	0.39905	0.0002052	0.87514	0.00045002	1.2742	0.00065522	514.2224654270835	34.738	0.25931	34.58	34.45	34.709	-0.15834					6	4	2	0	0	0	0.25874	1	12942	12942		11.64	5.8799	1	20299000	+		22725	15067	14277	14362	21853	21853					-0.0825005534607044
NSRHYDRPQDS	11	Unmodified	_NSRHYDRPQDS_					0	0	0		STRIP2|p.R778H|1|0.43|ENSG00000128578|chr7:129485657-129485657|G/A|missense_variant	STRIP2|p.R778H|1|0.43|ENSG00000128578|chr7:129485657-129485657|G/A|missense_variant	STRIP2|p.R778H|1|0.43|ENSG00000128578|chr7:129485657-129485657|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	458.8764953613281	3	458.876356	1373.60724	0.23239	0.00010664	-0.25577	-0.00011737	-0.023377	-1.0727E-05	458.8763593984366	17.906	0.20859	17.906	17.776	17.985	0					9	3	3	0	0	0	0.67406	1	6129	6129		17.572	0	1	13704000			22726	18241	14278	14363	21854	21854					-0.06462049226547606
NSSDHVLLY	9	Unmodified	_NSSDHVLLY_					0	0	0		ENST00000369244.6_1_6:99374760-99382655:-|nuORF;ENST00000229971.2_1_6:99374760-99395723:-|nuORF	ENST00000369244.6_1_6:99374760-99382655:-|nuORF	ENST00000369244.6_1_6:99374760-99382655:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	525.0283203125	2	524.258914	1046.50327	0.40879	0.00021431	0.58609	0.00030726	0.99488	0.00052158	524.2592638228747	41.176	0.31221	41.176	41.029	41.341	0					8	5	2	0	0	0	0.1195	1	15548	15548		36.506	8.8774	1	7988400			22727	6766	14279	14364	21855	21855					-0.018117243160759244
NSSNNSSH	8	Unmodified	_NSSNNSSH_					0	0	0		KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant;nc|ENSG00000100433|P57789|KCNK10;nc|ENSG00000100433|P57789-4|KCNK10;ENSG00000100433|ENST00000319231|KCNK10;KCNK10|p.G286Efs*14|1|0.18|ENSG00000100433|chr14:88188106-88188106|C/-|frameshift_variant	KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant	KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	846.3348999023438	1	846.333649	845.326373	0.90659	0.00076728	0.30675	0.00025961	1.2133	0.0010269	846.3338912090305	40.563	0.25732	40.494	40.365	40.622	-0.069626					7	4	2	0	0	0	0.85571	1	15302	15302		4.3292	1.334	1	32578000			22728	1710	14280	14365	21856	21856					-0.10247760146364726
NSSVKRTQIK	10	Unmodified	_NSSVKRTQIK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S1	1	387.5622253417969	3	387.56305	1159.66732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.685	1	53.685	53.185	54.185	0								0	0	0	0.96465	1	20566	20566		1.4551	0.38366	1				22729	4258;9506	14281	14366	21857	21857					0.09387293174654587
NSTRWLRRTG	10	Unmodified	_NSTRWLRRTG_					0	0	0		ENST00000454558.2_2_2:97216348-97216839:+|nuORF	ENST00000454558.2_2_2:97216348-97216839:+|nuORF	ENST00000454558.2_2_2:97216348-97216839:+|nuORF	MSMS	HCT116MG_D190212_S3	3	624.2365112304688	2	623.841802	1245.66905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.35	1	12.413	11.913	12.913	0.06246								0	0	0	0.96836	1	3845	3845		0.35063	0	1				22730	8014	14282	14367	21858	21858					0.0560434698327299
NSVIYTNQP	9	Unmodified	_NSVIYTNQP_					0	0	0		ENSG00000158423|ENST00000375327|RIBC1	ENSG00000158423|ENST00000375327|RIBC1	ENSG00000158423|ENST00000375327|RIBC1	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2587280273438	2	518.258914	1034.50327	0.057198	2.9643E-05	-0.082629	-4.2823E-05	-0.025432	-1.318E-05	518.2588138819516	16.995	1.8208	17.079	16.08	17.901	0.084469					49	34	2	0	0	0	0.19461	1	5629	5629		41.84	1.8899	1	3187800			22731	4371	14283	14368	21859	21859					-0.01259724316082611
NSVIYTNQP	9	Unmodified	_NSVIYTNQP_					0	0	0		ENSG00000158423|ENST00000375327|RIBC1	ENSG00000158423|ENST00000375327|RIBC1	ENSG00000158423|ENST00000375327|RIBC1	MULTI-SECPEP	HCT116MG_D190212_S4	4	518.2466430664062	2	518.258914	1034.50327	-0.080521	-4.1731E-05	0.084844	4.3971E-05	0.0043229	2.2404E-06	518.2588981183981	17.307	1.2961	17.137	16.448	17.744	-0.17046					42	24	2	0	0	0	0.17558	1	5695	5695		27.629	0	1	1923000			22732	4371	14283	14368	21860	21860					-0.01259724316082611
NSVLRPLMAF	10	Unmodified	_NSVLRPLMAF_					0	0	0			REV__nc|ENSG00000164867|P29474-3|NOS3	REV__nc|ENSG00000164867|P29474-3|NOS3	MSMS	HCT116MG_D190212_S2	2	574.3193969726562	2	574.318251	1146.62195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.029	1	29.744	29.244	30.244	-0.28453								0	0	0	0.7978	1	11024	11024		29.082	2.8134	1		+		22733	17193	14284	14369	21861	21861					0.05450351387889896
NSYWVGEDSTY	11	Unmodified	_NSYWVGEDSTY_					0	0	0		ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	MSMS	HCT116MG_D190212_S1	1	660.7728271484375	2	660.772582	1319.53061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.838	1	44.838	44.338	45.338	0								0	0	0	1.4298E-07	1	16973	16973		148.27	126.73	1				22734	5346	14285	14370	21862	21862					-0.11637285566371247
NSYWVGEDSTY	11	Unmodified	_NSYWVGEDSTY_					0	0	0		ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	660.7725219726562	2	660.772582	1319.53061	0.83601	0.00055241	-0.43062	-0.00028454	0.40539	0.00026787	660.7722860941345	45.068	0.3127	44.758	44.628	44.941	-0.30927					10	5	3	0	0	0	0.15462	1	16891	16891		80.676	69.877	1	10656000			22735	5346	14285	14370	21863	21863					-0.11637285566371247
NSYWVGEDSTY	11	Unmodified	_NSYWVGEDSTY_					0	0	0		ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	660.772582	1319.53061	0.66702	0.00044075	0.078904	5.2138E-05	0.74593	0.00049289	661.2744582697949	44.88	0.2074	44.795	44.691	44.899	-0.084797	0.018469	0.00056757	NaN	80.676	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5451600			22736	5346	14285	14370							-0.11637285566371247
NTCLKDECN	9	Unmodified	_NTCLKDECN_					0	0	0			REV__ENSG00000124812|ENST00000335847|CRISP1	REV__ENSG00000124812|ENST00000335847|CRISP1	MSMS	HCT116MG_D190212_S1	1	520.211181640625	2	520.212792	1038.41103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.647	1	45.647	45.147	46.147	0								0	0	0	0.76834	1	17299	17299		6.7232	0.51738	1		+		22737	11799	14286	14371	21864	21864					-0.1066389371628702
NTDASGKIEKY	11	Unmodified	_NTDASGKIEKY_					0	0	0		LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1	LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	613.3068237304688	2	613.306592	1224.59863	0.35895	0.00022014	0.24195	0.00014839	0.6009	0.00036853	613.3065384400458	21.436	0.20725	21.053	20.91	21.117	-0.38288					7	3	3	0	0	0	3.8011999999999997E-22	1	7562	7562		242.87	171.16	1	24511000			22738	1051	14287	14372	21865	21865					-0.004684159157022805
NTDASGKIEKY	11	Unmodified	_NTDASGKIEKY_					0	0	0		LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1	LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	613.306592	1224.59863	0.61425	0.00037672	0.24989	0.00015326	0.86413	0.00052998	613.3063351371802	20.887	0.15635	20.887	20.8	20.956	0	-0.083337	7.7376E-06	NaN	242.87	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3029200			22739	1051	14287	14372							-0.004684159157022805
NTDDTIGDLK	10	Unmodified	_NTDDTIGDLK_					0	0	0		ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENSG00000198258|ENST00000586895|UBL5	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2645874023438	2	546.264393	1090.51423	0.46418	0.00025356	-0.078436	-4.2847E-05	0.38574	0.00021072	546.2643463928574	31.026	0.31031	30.759	30.663	30.974	-0.26704					6	5	2	0	0	0	0.70908	1	11452	11452		19.626	8.802	1	19734000			22740	6220	14288	14373	21866	21866					-0.02740366732473376
NTDDTIGDLK	10	Unmodified	_NTDDTIGDLK_					0	0	0		ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENSG00000198258|ENST00000586895|UBL5	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	546.2816772460938	2	546.264393	1090.51423	0.35711	0.00019508	1.3296	0.00072634	1.6868	0.00092141	546.2647953644506	31.179	0.20908	30.919	30.813	31.022	-0.26071					6	3	2	0	0	0	0.30784	1	11419	11419		10.899	0	1	2270800			22741	6220	14288	14373	21867	21867					-0.02740366732473376
NTDFGDEFY	9	Unmodified	_NTDFGDEFY_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S3	3	1107.4266357421875	1	1107.42655	1106.41927	0.2864	0.00031717	0.12197	0.00013507	0.40837	0.00045224	1107.4266431563585	49.452	0.31425	49.136	48.975	49.289	-0.31596					9	5	2	0	0	0	0.010834	1	18639	18639		111.29	77.1	1	5804700			22742	2498	14289	14374	21868	21868					-0.12968300203647232
NTDFGDEFY	9	Unmodified	_NTDFGDEFY_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S3	3	554.217041015625	2	554.216911	1106.41927	0.30199	0.00016737	0.44195	0.00024494	0.74394	0.0004123	554.2169279894727	49.443	0.26182	49.127	48.975	49.237	-0.31596					7	4	2	0	0	0	0.34272	1	18647	18647		26.268	15.444	1	3657300			22743	2498	14289	14374	21869	21869					-0.12968300203647232
NTDFGDSGRLY	11	Unmodified	_NTDFGDSGRLY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	HCT116MG_D190212_S3	3	622.8675537109375	2	622.780741	1243.54693	0.48447	0.00030172	0.36373	0.00022653	0.8482	0.00052824	622.7811172049527	38.109	0.19448	37.807	37.691	37.885	-0.30137					5	3	2	0	0	0	0.41923	2	14076	14076;14135		53.317	19.872	1	6341800			22744	4005	14290	14375	21870;21871	21870					-0.06510159609592847
NTDFGDSGRLY	11	Unmodified	_NTDFGDSGRLY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	HCT116MG_D190212_S4	4	622.78125	2	622.780741	1243.54693	0.092821	5.7807E-05	0.26286	0.0001637	0.35568	0.00022151	622.7809690349168	38.241	0.19495	37.858	37.76	37.955	-0.38282					5	3	2	0	0	0	0.3318	1	14022	14022		61.09	15.39	1	2864400			22745	4005	14290	14375	21872	21872					-0.06510159609592847
NTDFGDSGRLY	11	Unmodified	_NTDFGDSGRLY_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MULTI-MATCH	HCT116MG_D190212_S1	1		2	622.780741	1243.54693	0.39587	0.00024654	1.4044	0.00087464	1.8003	0.0011212	622.7805080585227	37.89	0.15617	37.89	37.759	37.916	0	0.037942	0.0013645	NaN	61.09	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3206100			22746	4005	14290	14375							-0.06510159609592847
NTDFKQLY	8	Unmodified	_NTDFKQLY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000562367.1_1_16:58208309-58230657:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;CSNK2A3|p.Y182Sfs*10|1|0.05|ENSG00000254598|chr11:11352575-11352576|-/CTTTCGG|frameshift_variant	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	514.7559204101562	2	514.756007	1027.49746	0.098371	5.0637E-05	0.13621	7.0115E-05	0.23458	0.00012075	514.7558204408501	40.017	0.20769	39.944	39.842	40.05	-0.072838					6	3	2	0	0	0	0.1105	1	15098	15098		92.653	28.417	1	11149000			22747	1244;1770	14291	14376	21873	21873					-0.01518822827756594
NTDFRCPH	8	Unmodified	_NTDFRCPH_					0	0	0			REV__ENSG00000146054|ENST00000274773|TRIM7	REV__ENSG00000146054|ENST00000274773|TRIM7	MULTI-MSMS	HCT116MG_D190212_S2	2	495.2168884277344	2	495.216526	988.418499	0.51259	0.00025384	0.41779	0.0002069	0.93038	0.00046074	495.216727082206	31.843	0.62188	31.594	31.354	31.976	-0.24883					25	11	3	0	0	0	0.72197	1	11748	11748		20.454	20.454	1	30884000	+		22748	12470	14292	14377	21874	21874					-0.07617373333698652
NTDFRCPH	8	Unmodified	_NTDFRCPH_					0	0	0			REV__ENSG00000146054|ENST00000274773|TRIM7	REV__ENSG00000146054|ENST00000274773|TRIM7	MULTI-MSMS	HCT116MG_D190212_S4	4	495.21746826171875	2	495.216526	988.418499	0.22483	0.00011134	0.70558	0.00034941	0.93041	0.00046075	495.217003916124	32.199	0.46708	31.823	31.59	32.057	-0.37529					13	8	2	0	0	0	0.72197	1	11699	11699		20.454	20.454	1	17014000	+		22749	12470	14292	14377	21875	21875					-0.07617373333698652
NTDFRCPH	8	Unmodified	_NTDFRCPH_					0	0	0			REV__ENSG00000146054|ENST00000274773|TRIM7	REV__ENSG00000146054|ENST00000274773|TRIM7	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	495.216526	988.418499	0.51259	0.00025384	0.41779	0.0002069	0.93038	0.00046074	495.216727082206	31.843	0.62188	31.594	31.354	31.976	-0.24883	-0.12127	-0.00022156	NaN	20.454	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30884000	+		22750	12470	14292	14377							-0.07617373333698652
NTDFRCPH	8	Unmodified	_NTDFRCPH_					0	0	0			REV__ENSG00000146054|ENST00000274773|TRIM7	REV__ENSG00000146054|ENST00000274773|TRIM7	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	495.216526	988.418499	0.16564	8.2026E-05	0.69582	0.00034458	0.86146	0.00042661	495.21697383652514	32.016	0.57214	31.737	31.526	32.098	-0.27841	0.022223	5.3809E-05	NaN	20.454	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24643000	+		22751	12470	14292	14377							-0.07617373333698652
NTDFRCPH	8	Unmodified	_NTDFRCPH_					0	0	0			REV__ENSG00000146054|ENST00000274773|TRIM7	REV__ENSG00000146054|ENST00000274773|TRIM7	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	495.216526	988.418499	0.22483	0.00011134	0.70558	0.00034941	0.93041	0.00046075	495.217003916124	32.199	0.46708	31.823	31.59	32.057	-0.37529	0.10836	6.3468E-05	NaN	20.454	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17014000	+		22752	12470	14292	14377							-0.07617373333698652
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1138.4688720703125	1	1138.46875	1137.46147	0.32291	0.00036763	0.41023	0.00046703	0.73314	0.00083466	1138.4685646026085	38.929	0.31107	38.929	38.748	39.059	0					11	5	3	0	0	0	0.0035147	1	14598	14598		168.66	120.31	1	26494000			22753	3925	14293	14378	21876	21876					-0.10176324795270375
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	569.7381591796875	2	569.738011	1137.46147	0.070605	4.0227E-05	0.2299	0.00013098	0.30051	0.00017121	569.7382304639563	38.929	0.20766	38.929	38.851	39.059	0					5	3	2	0	0	0	0.0062667	1	14619	14619		126.57	90.439	1	11721000			22754	3925	14293	14378	21877	21877					-0.10176324795270375
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	569.7384643554688	2	569.738011	1137.46147	0.46051	0.00026237	0.097625	5.5621E-05	0.55813	0.00031799	569.7380101192841	39.199	0.42354	38.898	38.716	39.14	-0.30137					17	7	3	0	0	0	0.0023719	1	14549	14549		185.05	103.16	1	20235000			22755	3925	14293	14378	21878	21878					-0.10176324795270375
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1138.4697265625	1	1138.46875	1137.46147	0.43436	0.00049451	0.10112	0.00011513	0.53549	0.00060963	1138.4689395674375	39.199	0.3715	38.898	38.768	39.14	-0.30137					16	6	4	0	0	0	0.0045841	1	14553	14553		142.08	107.68	1	20304000			22756	3925	14293	14378	21879	21879					-0.10176324795270375
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1138.469970703125	1	1138.46875	1137.46147	0.53305	0.00060686	0.34587	0.00039376	0.87892	0.0010006	1138.468955134166	39.327	0.32697	38.947	38.773	39.1	-0.38055					16	7	3	0	0	0	0.0048275	1	14421	14421		139.14	110.06	1	15005000			22757	3925	14293	14378	21880	21880					-0.10176324795270375
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	569.738525390625	2	569.738011	1137.46147	0.59694	0.0003401	-0.12944	-7.3747E-05	0.46751	0.00026636	569.7379871540733	39.326	0.28456	38.945	38.773	39.057	-0.38055					14	6	3	0	0	0	0.0045841	1	14436	14436		142.08	98.221	1	9700800			22758	3925	14293	14378	21881	21881					-0.10176324795270375
NTDHLTTVLY	10	Unmodified	_NTDHLTTVLY_					0	0	0		nc|nan|Q96EF9|ZHX1-C8orf76;ENSG00000189376|ENST00000276704|C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	nc|nan|Q96EF9|ZHX1-C8orf76	MULTI-MSMS	HCT116MG_D190212_S2	2	588.7987060546875	2	588.798403	1175.58225	0.73518	0.00043287	-0.27638	-0.00016273	0.4588	0.00027014	588.7983653806914	42.525	0.31234	42.455	42.273	42.585	-0.069984					10	5	3	0	0	0	0.39839	1	16128	16128		42.312	13.818	1	22119000			22759	6036	14294	14379	21882	21882					0.0014850291818220285
NTDHQTQL	8	Unmodified	_NTDHQTQL_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51;nc|ENSG00000051180|Q06609-3|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	HCT116MG_D190212_S2	2	478.7252502441406	2	478.725238	955.435923	0.11747	5.6237E-05	-0.42288	-0.00020244	-0.30541	-0.00014621	478.7250019351133	21.63	0.25964	21.245	21.115	21.375	-0.38503					5	4	2	0	0	0	0.22303	1	7630	7630		69.105	20.759	1	17565000			22760	1055	14295	14380	21883	21883					-0.04357754527029556
NTDHQTQLLY	10	Unmodified	_NTDHQTQLLY_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51;nc|ENSG00000051180|Q06609-3|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	HCT116MG_D190212_S2	2	616.7990112304688	2	616.798934	1231.58332	0.20957	0.00012926	-0.063193	-3.8977E-05	0.14638	9.0284E-05	616.7988782074398	37.609	0.45969	37.506	37.335	37.795	-0.10318					23	8	4	0	0	0	0.021264	2	14106	14071;14106		118.07	81.941	1	423260000			22761	1055	14296	14381	21884;21885	21885					-0.02321282712887296
NTDHQTQLLY	10	Unmodified	_NTDHQTQLLY_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51;nc|ENSG00000051180|Q06609-3|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	HCT116MG_D190212_S4	4	616.7994995117188	2	616.798934	1231.58332	0.38487	0.00023739	0.601	0.0003707	0.98587	0.00060808	616.7991768356472	37.938	0.29687	37.556	37.463	37.76	-0.38283					46	19	3	0	0	0	0.58749	1	13869	13869		29.082	11.969	1	32328000			22762	1055	14296	14381	21886	21886					-0.02321282712887296
NTDKAVNW	8	Unmodified	_NTDKAVNW_					0	0	0		ARSK|p.N262Tfs*39|1|0.4|ENSG00000164291|chr5:95586642-95586642|A/-|frameshift_variant;ENSG00000164291|ENST00000380009|ARSK	ARSK|p.N262Tfs*39|1|0.4|ENSG00000164291|chr5:95586642-95586642|A/-|frameshift_variant	ARSK|p.N262Tfs*39|1|0.4|ENSG00000164291|chr5:95586642-95586642|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	474.2325134277344	2	474.232699	946.450845	0.27714	0.00013143	0.21791	0.00010334	0.49505	0.00023477	474.2327412910158	32.207	0.67467	31.832	31.538	32.212	-0.37529					22	12	3	0	0	0	0.58007	1	11687	11687		34.102	1.797	1	15025000			22763	193	14297	14382	21887	21887					-0.0245226265905103
NTDLMTSQCY	10	Carbamidomethyl (C)	_NTDLMTSQC(Carbamidomethyl (C))Y_	NTDLMTSQC(1)Y		NTDLMTSQC(48)Y		0	1	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	616.7499389648438	2	616.749738	1231.48492	0.64601	0.00039843	-1.0399	-0.00064134	-0.39385	-0.00024291	616.7494711430103	35.501	0.2584	35.501	35.319	35.578	0					9	4	3	0	0	0	0.33238	1	13221	13221		47.594	12.662	1	15383000	+		22764	14056	14298	14383	21888	21888	58				-0.12155970344633715
NTDLMTSQCY	10	Carbamidomethyl (C)	_NTDLMTSQC(Carbamidomethyl (C))Y_	NTDLMTSQC(1)Y		NTDLMTSQC(59)Y		0	1	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	616.75048828125	2	616.749738	1231.48492	0.67084	0.00041374	-0.084771	-5.2282E-05	0.58607	0.00036146	616.7496295508611	35.742	0.2374	35.443	35.338	35.575	-0.29922					17	7	3	0	0	0	0.20072	1	13169	13169		59.368	17.413	1	27362000	+		22765	14056	14298	14383	21889	21889	58				-0.12155970344633715
NTDLMTSQCY	10	Carbamidomethyl (C)	_NTDLMTSQC(Carbamidomethyl (C))Y_					0	1	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	616.749738	1231.48492	0.64601	0.00039843	-1.0399	-0.00064134	-0.39385	-0.00024291	616.7494711430103	35.501	0.2584	35.501	35.319	35.578	0	0.049848	-0.00096969	NaN	59.368	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15383000	+		22766	14056	14298	14383			58				-0.12155970344633715
NTDLMTSQCY	10	Carbamidomethyl (C)	_NTDLMTSQC(Carbamidomethyl (C))Y_					0	1	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	616.749738	1231.48492	0.67084	0.00041374	-0.084771	-5.2282E-05	0.58607	0.00036146	616.7496295508611	35.742	0.2374	35.443	35.338	35.575	-0.29922	-0.0077583	0.00020842	NaN	59.368	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27362000	+		22767	14056	14298	14383			58				-0.12155970344633715
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	588.2402954101562	2	588.239006	1174.46346	1.0037	0.0005904	-0.8827	-0.00051924	0.12097	7.1162E-05	588.2386314241597	37.529	0.35977	37.529	37.348	37.707	0					16	6	4	0	0	0	0.24395	2	14032	14020;14032		55.503	11.644	1	42408000	+		22768	14056	14298	14384	21890;21891	21891					-0.11679355373325961
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	588.239013671875	2	588.239006	1174.46346	0.36681	0.00021577	-0.44854	-0.00026385	-0.081727	-4.8075E-05	588.2389338040173	37.638	0.51134	37.535	37.335	37.847	-0.10318					23	9	4	0	0	0	0.24395	1	14111	14111		55.503	9.7629	1	165670000	+		22769	14056	14298	14384	21892	21892					-0.11679355373325961
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	588.239990234375	2	588.239006	1174.46346	0.61748	0.00036322	0.46319	0.00027247	1.0807	0.00063569	588.2396641681709	37.805	0.27759	37.504	37.413	37.691	-0.30137					48	22	3	0	0	0	0.53455	1	13982	13982		32.786	7.3864	1	62965000	+		22770	14056	14298	14384	21893	21893					-0.11679355373325961
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	588.740966796875	2	588.239006	1174.46346	0.36346	0.0002138	0.64294	0.0003782	1.0064	0.000592	588.2395776406923	37.905	0.14108	37.522	37.47	37.611	-0.38283					19	13	2	0	0	0	0.37752	1	13875	13875		43.772	7.6454	1	15437000	+		22771	14056	14298	14384	21894	21894					-0.11679355373325961
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-SECPEP	HCT116MG_D190212_S4	4	588.740966796875	2	588.239006	1174.46346	0.36346	0.0002138	0.64294	0.0003782	1.0064	0.000592	588.2395776406923	37.905	0.14108	37.522	37.47	37.611	-0.38283					19	13	2	0	0	0	0.2501	1	13875	13875		43.772	7.6454	1	15437000	+		22772	14056	14298	14384	21895	21895					-0.11679355373325961
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	588.239006	1174.46346	0.36681	0.00021577	-0.44854	-0.00026385	-0.081727	-4.8075E-05	588.2389338040173	37.638	0.51134	37.535	37.335	37.847	-0.10318	0.012933	-0.0003324	NaN	55.503	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165670000	+		22773	14056	14298	14384							-0.11679355373325961
NTDNLLTEY	9	Unmodified	_NTDNLLTEY_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1;ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant;ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ICE1|p.I82Ffs*14|1|0.33|ENSG00000164151|chr5:5441153-5441153|A/-|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7539672851562	2	541.753661	1081.49277	0.65921	0.00035713	-0.73475	-0.00039805	-0.075543	-4.0925E-05	541.7534156186551	47.201	0.25924	47.079	46.922	47.182	-0.12175					9	4	3	0	0	0	0.28073	1	18025	18025		32.786	7.7947	1	18375000			22774	4672	14299	14385	21896	21896					-0.044717517611843505
NTDNLLTEY	9	Unmodified	_NTDNLLTEY_					0	0	0		ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant;ENSG00000164151|ENST00000296564|ICE1;ICE1|p.F326Lfs*82|1|0.38|ENSG00000164151|chr5:5457612-5457612|T/-|frameshift_variant;ICE1|p.D1105Rfs*4|1|0.21|ENSG00000164151|chr5:5462639-5462640|-/G|frameshift_variant;ICE1|p.G1104Efs*6|1|0.34|ENSG00000164151|chr5:5462640-5462640|G/-|frameshift_variant;ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ICE1|p.I82Ffs*14|1|0.33|ENSG00000164151|chr5:5441153-5441153|A/-|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	ICE1|p.H1965Afs*55|1|0.29|ENSG00000164151|chr5:5465219-5465220|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	541.753662109375	2	541.753661	1081.49277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.447	1	47.132	46.632	47.632	-0.31525								0	0	0	0.14112	1	17818	17818		51.63	13.479	1				22775	4672	14299	14385	21897	21897					-0.044717517611843505
NTDPHSQEY	9	Unmodified	_NTDPHSQEY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S1	1	545.7255859375	2	545.725435	1089.43632	0.43242	0.00023598	0.1051	5.7355E-05	0.53752	0.00029334	545.7253691296667	18.688	0.31259	18.688	18.506	18.819	0					12	5	3	0	0	0	3.7762E-08	1	6439	6439		226.55	92.256	1	17734000			22776	5757	14300	14386	21898	21898					-0.10482379597829095
NTDPHSQEY	9	Unmodified	_NTDPHSQEY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7256469726562	2	545.725435	1089.43632	0.41178	0.00022472	0.20697	0.00011295	0.61875	0.00033767	545.7254579167154	19.127	0.52147	18.758	18.575	19.096	-0.3695					25	9	4	0	0	0	2.7271E-05	2	6615	6615;6738		211.85	64.796	1	132740000			22777	5757	14300	14386	21899;21900	21899					-0.10482379597829095
NTDPHSQEY	9	Unmodified	_NTDPHSQEY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S2	2	1090.4444580078125	1	1090.44359	1089.43632	0.52006	0.0005671	-0.15269	-0.0001665	0.36737	0.0004006	1090.443700019948	19.127	0.26052	18.758	18.627	18.888	-0.3695					10	4	3	0	0	0	7.9148E-05	1	6640	6640		202.97	77.441	1	15734000			22778	5757	14300	14386	21901	21901					-0.10482379597829095
NTDPHSQEY	9	Unmodified	_NTDPHSQEY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S3	3	545.7257080078125	2	545.725435	1089.43632	0.44653	0.00024368	0.17775	9.7001E-05	0.62427	0.00034068	545.7254430153108	18.368	0.52096	18.445	18.257	18.778	0.076334					23	9	4	0	0	0	1.4455E-05	1	6235	6235		214.05	79.754	1	40907000			22779	5757	14300	14386	21902	21902					-0.10482379597829095
NTDPHSQEY	9	Unmodified	_NTDPHSQEY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S4	4	545.7255859375	2	545.725435	1089.43632	0.43085	0.00023513	0.21408	0.00011683	0.64493	0.00035196	545.7252939265732	18.614	0.51987	18.433	18.251	18.771	-0.18052					17	9	3	0	0	0	2.7271E-05	1	6265	6265		211.85	77.559	1	10276000			22780	5757	14300	14386	21903	21903					-0.10482379597829095
NTDPHSQEY	9	Unmodified	_NTDPHSQEY_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1090.44359	1089.43632	0.40097	0.00043724	-0.39743	-0.00043337	0.0035414	3.8617E-06	1090.442973061679	18.39	0.15641	18.467	18.361	18.518	0.076334	-0.14557	-8.514E-05	NaN	202.97	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1422700			22781	5757	14300	14386							-0.10482379597829095
NTDPSIVMTY	10	Unmodified	_NTDPSIVMTY_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	HCT116MG_D190212_S2	2	1140.5255126953125	1	1140.52415	1139.51688	0.53869	0.00061439	-0.36484	-0.00041611	0.17385	0.00019828	1140.5235389145712	45.529	0.30874	45.436	45.256	45.565	-0.092472					9	5	2	0	0	0	0.0026164	1	17329	17329		173.69	109.45	1	26324000			22782	4174	14301	14387	21904	21904					-0.04730234599173855
NTDPSIVMTY	10	Unmodified	_NTDPSIVMTY_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1140.52415	1139.51688	0.6336	0.00072264	0.39103	0.00044598	1.0246	0.0011686	1140.5243245877764	45.373	0.2072	45.373	45.244	45.451	0	-0.031873	0.00078359	NaN	173.69	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5269500			22783	4174	14301	14387							-0.04730234599173855
NTDPWAGYRY	10	Unmodified	_NTDPWAGYRY_					0	0	0		ENSG00000164024|ENST00000296411|METAP1;ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF	ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	621.7808837890625	2	621.780544	1241.54654	0.5419	0.00033694	-0.31356	-0.00019497	0.22834	0.00014198	621.7805273363871	43.05	0.36478	43.05	42.847	43.212	0					16	6	3	0	0	0	0.010123	2	16292	16275;16292		148.27	96.638	1	29610000			22784	4659	14302	14388	21905;21906	21906					-0.06457534538822074
NTDPWAGYRY	10	Unmodified	_NTDPWAGYRY_					0	0	0		ENSG00000164024|ENST00000296411|METAP1;ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF	ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	621.7814331054688	2	621.780544	1241.54654	0.33833	0.00021037	0.35712	0.00022205	0.69546	0.00043242	621.7809337888804	42.96	0.66888	42.89	42.637	43.306	-0.069984					33	12	4	0	0	0	0.0087358	1	16268	16268		155.95	155.95	1	220320000			22785	4659	14302	14388	21907	21907					-0.06457534538822074
NTDPWAGYRY	10	Unmodified	_NTDPWAGYRY_					0	0	0		ENSG00000164024|ENST00000296411|METAP1;ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF	ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	621.781005859375	2	621.780544	1241.54654	0.48257	0.00030005	0.38407	0.0002388	0.86663	0.00053885	621.780887118041	43.265	0.51018	42.96	42.835	43.345	-0.30472					23	12	3	0	0	0	0.027339	2	16134	16115;16134		107.1	107.1	1	20578000			22786	4659	14302	14388	21908;21909	21909					-0.06457534538822074
NTDPWAGYRY	10	Unmodified	_NTDPWAGYRY_					0	0	0		ENSG00000164024|ENST00000296411|METAP1;ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF	ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	622.282958984375	2	621.780544	1241.54654	0.3478	0.00021626	0.87638	0.00054492	1.2242	0.00076117	621.7810881596096	43.394	0.20057	43.02	42.913	43.114	-0.37433					11	8	2	0	0	0	0.40349	1	15955	15955		41.956	41.956	1	5652700			22787	4659	14302	14388	21910	21910					-0.06457534538822074
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S1	1	569.7781982421875	2	569.778002	1137.54145	0.37271	0.00021236	0.0038799	2.2107E-06	0.37659	0.00021457	569.7780167399468	20.149	0.26126	20.149	19.966	20.227	0					13	4	4	0	0	0	0.0034538	1	7027	7027		162.31	99.742	1	60626000			22788	4653	14303	14389	21911	21911					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S1	1	380.1876525878906	3	380.18776	1137.54145	-0.090235	-3.4306E-05	-0.0050241	-1.9101E-06	-0.095259	-3.6216E-05	380.1877787063699	20.149	0.2611	20.149	20.018	20.279	0					10	4	4	0	0	0	0.10482	1	7030	7030		46.475	30.737	1	14534000			22789	4653	14303	14389	21912	21912					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S2	2	569.7781982421875	2	569.778002	1137.54145	0.42145	0.00024013	0.076598	4.3644E-05	0.49805	0.00028378	569.7780054939772	20.747	0.68024	20.368	20.13	20.81	-0.37949					30	12	4	0	0	0	0.0034852	1	7266	7266		165.58	89.823	1	525400000			22790	4653	14303	14389	21913	21913					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S2	2	380.1876525878906	3	380.18776	1137.54145	-0.13676	-5.1994E-05	0.23641	8.9878E-05	0.099646	3.7884E-05	380.1877628016862	20.747	0.57926	20.367	20.023	20.602	-0.37949					24	10	5	0	0	0	0.051033	1	7269	7269		60.899	40.318	1	99497000			22791	4653	14303	14389	21914	21914					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S2	2	1138.548828125	1	1138.54873	1137.54145	0.62461	0.00071115	-0.056406	-6.4221E-05	0.56821	0.00064693	1138.5484093769687	20.747	0.2101	20.368	20.236	20.446	-0.37949					6	3	2	0	0	0	0.0034538	1	7291	7291		162.31	94.476	1	15277000			22792	4653	14303	14389	21915	21915					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S3	3	569.7782592773438	2	569.778002	1137.54145	0.41611	0.00023709	-0.013968	-7.9584E-06	0.40214	0.00022913	569.7779658215086	19.843	0.677	19.897	19.693	20.37	0.054913					31	12	5	0	0	0	0.0035707	1	6820	6820		174.48	85.081	1	114440000			22793	4653	14303	14389	21916	21916					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S3	3	380.1877746582031	3	380.18776	1137.54145	-0.10812	-4.1107E-05	-0.060223	-2.2896E-05	-0.16835	-6.4003E-05	380.1877224551108	19.872	0.41682	19.92	19.739	20.156	0.048359					20	7	4	0	0	0	0.02327	1	6823	6823		77.049	39.974	1	43942000			22794	4653	14303	14389	21917	21917					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S4	4	569.7781982421875	2	569.778002	1137.54145	0.57084	0.00032525	-0.23418	-0.00013343	0.33665	0.00019182	569.7778337629744	20.268	0.51985	20.066	19.936	20.456	-0.20133					23	9	4	0	0	0	0.0040049	1	6928	6928		150.62	68.729	1	40705000			22795	4653	14303	14389	21918	21918					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	HCT116MG_D190212_S4	4	380.5218200683594	3	380.18776	1137.54145	0.050834	1.9327E-05	-0.23145	-8.7994E-05	-0.18061	-6.8667E-05	380.1876687081069	20.271	0.31187	20.07	19.936	20.248	-0.20133					12	5	3	0	0	0	0.082877	1	6938	6938		57.108	36.527	1	10955000			22796	4653	14303	14389	21919	21919					-0.02181838401429559
NTDRPGGYSY	10	Unmodified	_NTDRPGGYSY_					0	0	0		ENST00000539639.5_1_12:123707622-123714920:-|nuORF	ENST00000539639.5_1_12:123707622-123714920:-|nuORF	ENST00000539639.5_1_12:123707622-123714920:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	565.2493896484375	2	565.249077	1128.4836	0.30155	0.00017045	0.45035	0.00025456	0.7519	0.00042501	565.2491297375491	25.513	0.26084	25.513	25.353	25.614	0					9	4	3	0	0	0	0.0095435	1	9195	9195		151.48	117.38	1	8458100			22797	8683	14304	14390	21920	21920					-0.07550100326852771
NTDRPGGYSY	10	Unmodified	_NTDRPGGYSY_					0	0	0		ENST00000539639.5_1_12:123707622-123714920:-|nuORF	ENST00000539639.5_1_12:123707622-123714920:-|nuORF	ENST00000539639.5_1_12:123707622-123714920:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	565.2494506835938	2	565.249077	1128.4836	0.58859	0.0003327	0.091307	5.1611E-05	0.67989	0.00038431	565.2490424383316	25.939	0.31182	25.57	25.394	25.706	-0.36914					13	5	3	0	0	0	0.013379	1	9379	9379		135.86	85.93	1	33689000			22798	8683	14304	14390	21921	21921					-0.07550100326852771
NTDRQWLIDT	10	Unmodified	_NTDRQWLIDT_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	HCT116MG_D190212_S2	2	631.8145141601562	2	631.312209	1260.60986	0.702	0.00044318	0.031281	1.9748E-05	0.73329	0.00046293	631.8138882466254	44.802	0.20686	44.717	44.639	44.846	-0.084797					5	3	2	0	0	0	0.22175	1	17058	17058		31.636	18.763	1	20236000			22799	5838	14305	14391	21922	21922					-0.01001593821570168
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	483.23779296875	2	483.237981	964.461409	0.23456	0.00011335	-0.20007	-9.668E-05	0.034492	1.6668E-05	483.23798405738626	31.727	1.0941	31.727	31.388	32.482	0					59	20	5	0	0	0	0.0029202	2	11602	11602;11831		174.73	81.905	1	1123100000			22800	4975	14306	14392	21923;21924	21923					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	965.4696655273438	1	965.468686	964.461409	0.73822	0.00071273	-0.031127	-3.0052E-05	0.7071	0.00068268	965.468576723368	31.675	0.62565	31.675	31.44	32.066	0					31	11	4	0	0	0	0.0057764	1	11642	11642		231.73	111.28	1	137840000			22801	4975	14306	14392	21925	21925					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	483.238037109375	2	483.237981	964.461409	0.34669	0.00016753	-0.29798	-0.000144	0.048707	2.3537E-05	483.2380968287302	31.836	1.35	31.587	31.25	32.6	-0.24883					91	25	5	0	0	0	0.012121	2	11701	11701;11927		160.52	85.587	1	5957999999.999999			22802	4975	14306	14392	21926;21927	21926					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	965.4689331054688	1	965.468686	964.461409	0.79507	0.00076761	-0.074851	-7.2266E-05	0.72022	0.00069535	965.4685509368726	31.836	1.2985	31.587	31.25	32.549	-0.24883					70	24	5	0	0	0	0.0057764	2	11948	11717;11948		231.73	111.28	1	1572799999.9999998			22803	4975	14306	14392	21928;21929	21929					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.23809814453125	2	483.237981	964.461409	0.078561	3.7964E-05	-0.058545	-2.8291E-05	0.020016	9.6726E-06	483.23822180863965	31.986	1.3012	31.708	31.37	32.671	-0.27841					99	24	6	0	0	0	0.012121	2	11875	11644;11875		205.78	88.18	1	4062799999.9999995			22804	4975	14306	14392	21930;21931	21931					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	965.468994140625	1	965.468686	964.461409	0.49941	0.00048217	0.15748	0.00015204	0.65689	0.00063421	965.4687442041622	32.038	0.98882	31.76	31.422	32.41	-0.27841					54	18	5	0	0	0	0.024549	2	11671	11671;11899		199.75	91.753	1	469760000			22805	4975	14306	14392	21932;21933	21932					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2380065917969	2	483.237981	964.461409	0.20958	0.00010128	-4.2615	-0.0020593	-4.052	-0.0019581	483.2357051664502	33.603	1.2845	33.313	32.955	34.24	-0.29013					40	25	3	0	0	0	0.076688	1	12503	12503		100.37	42.9	1	15762000			22806	4975	14306	14392	21934	21934					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2380065917969	2	483.237981	964.461409	0.42053	0.00020322	-0.088272	-4.2656E-05	0.33226	0.00016056	483.23782464937545	57.998	0.8356	57.724	56.995	57.83	-0.27434					22	15	2	0	0	0	0.49192	1	21927	21927		41.84	13.353	1	1763400			22807	4975	14306	14392	21935	21935					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	483.2381286621094	2	483.237981	964.461409	0.017308	8.3641E-06	-0.0020332	-9.8253E-07	0.015275	7.3816E-06	483.23814619488314	32.199	1.1418	31.823	31.434	32.576	-0.37529					78	21	5	0	0	0	0.024631	2	11635	11635;11865		205.78	88.18	1	1539899999.9999998			22808	4975	14306	14392	21936;21937	21936					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF;ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	965.469482421875	1	965.468686	964.461409	0.4587	0.00044286	0.20555	0.00019845	0.66425	0.00064131	965.468799853633	32.199	0.7786	31.823	31.538	32.316	-0.37529					38	14	4	0	0	0	0.024663	1	11668	11668		208.15	87.695	1	169270000			22809	4975	14306	14392	21938	21938					-0.022242800046228695
NTDYMPNEF	9	Unmodified	_NTDYMPNEF_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3;REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MSMS	HCT116MG_D190212_S1	1	565.728271484375	2	565.726589	1129.43863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.975	1	21.975	21.475	22.475	0								0	0	0	0.74083	1	7758	7758		17.113	1.2657	1		+		22810	13745;13023	14307	14393	21939	21939					-0.12091667184404287
NTEDLSRPLY	10	Unmodified	_NTEDLSRPLY_					0	0	0		ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	MULTI-MSMS	HCT116MG_D190212_S3	3	604.3013916015625	2	604.30131	1206.58807	0.4361	0.00026354	-0.24084	-0.00014554	0.19526	0.00011799	604.3010794645622	32.038	0.41586	31.76	31.578	31.994	-0.27841					11	7	2	0	0	0	0.56527	1	11751	11751		30.637	0.79596	1	13352000			22811	6618	14308	14394	21940	21940					-0.006963985701304409
NTEDLSRPLY	10	Unmodified	_NTEDLSRPLY_					0	0	0		ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	MULTI-MATCH	HCT116MG_D190212_S2	2		2	604.30131	1206.58807	0.84585	0.00051115	-0.55218	-0.00033368	0.29367	0.00017746	604.3010664892831	31.991	0.31099	31.761	31.631	31.942	-0.23009	0.00036521	-0.00023058	NaN	30.637	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6385900			22812	6618	14308	14394							-0.006963985701304409
NTEEAAKQY	9	Unmodified	_NTEEAAKQY_					0	0	0			REV__LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	REV__LIMA1|p.T536Lfs*38|2|0.4|ENSG00000050405|chr12:50177739-50177739|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	527.2469482421875	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.827	1	34.53	34.03	35.03	-0.29707								0	0	0	0.50556	1	12833	12833		28.487	0.85804	1		+		22813	10618	14309	14395	21941	21941					-0.046686185583666884
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S1	1	541.7537841796875	2	541.753661	1081.49277	0.71343	0.0003865	-0.15547	-8.4226E-05	0.55796	0.00030227	541.753527186388	29.19	0.41732	29.19	29.007	29.425	0					19	7	3	0	0	0	2.7271E-05	1	10639	10639		211.85	133.13	1	153240000			22814	962	14310	14396	21942	21942					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S1	1	1082.5001220703125	1	1082.50005	1081.49277	0.82368	0.00089163	0.066201	7.1662E-05	0.88988	0.00096329	1082.4997554178146	29.19	0.26134	29.19	29.007	29.269	0					9	4	3	0	0	0	6.5412E-11	1	10664	10664		243.33	164.6	1	12880000			22815	962	14310	14396	21943	21943					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7540283203125	2	541.753661	1081.49277	0.7923	0.00042923	-0.029624	-1.6049E-05	0.76268	0.00041319	541.753600995936	29.512	0.46475	29.212	29.031	29.495	-0.30095					30	8	5	0	0	0	3.7762E-08	1	10814	10814		226.55	147.82	1	717380000			22816	962	14310	14396	21944	21944					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S2	2	1082.5013427734375	1	1082.50005	1081.49277	0.78429	0.00084899	0.0016905	1.83E-06	0.78598	0.00085082	1082.4999097186192	29.519	0.30997	29.218	29.082	29.392	-0.30095					15	5	4	0	0	0	6.5412E-11	1	10817	10817		243.33	164.6	1	134320000			22817	962	14310	14396	21945	21945					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7538452148438	2	541.753661	1081.49277	0.60404	0.00032724	-0.064933	-3.5178E-05	0.5391	0.00029206	541.7535718843336	29.607	0.52719	29.37	29.135	29.662	-0.23655					32	9	6	0	0	0	3.7762E-08	1	10746	10746		226.55	147.82	1	337990000			22818	962	14310	14396	21946	21946					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S3	3	1082.5008544921875	1	1082.50005	1081.49277	0.53771	0.00058207	0.067239	7.2786E-05	0.60495	0.00065486	1082.5002534889763	29.607	0.26085	29.37	29.239	29.5	-0.23655					11	4	3	0	0	0	6.5412E-11	1	10769	10769		243.33	164.6	1	18454000			22819	962	14310	14396	21947	21947					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S4	4	541.7538452148438	2	541.753661	1081.49277	0.43371	0.00023496	0.13679	7.4108E-05	0.5705	0.00030907	541.7536683703804	29.772	0.51999	29.423	29.189	29.709	-0.34921					34	9	6	0	0	0	2.7271E-05	1	10746	10746		211.85	133.13	1	101170000			22820	962	14310	14396	21948	21948					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S4	4	1082.5009765625	1	1082.50005	1081.49277	0.53052	0.00057429	0.25614	0.00027727	0.78666	0.00085156	1082.5002042960832	29.772	0.31198	29.423	29.241	29.553	-0.34921					8	5	2	0	0	0	3.0218E-08	1	10772	10772		228.37	149.64	1	4621900			22821	962	14310	14396	21949	21949					-0.044717517611843505
NTEENRRFY	9	Unmodified	_NTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ALDOA|p.E156Rfs*45|1|0.04|ENSG00000149925|chr16:30068902-30068903|-/AA|frameshift_variant	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	HCT116MG_D190212_S1	1	614.7891845703125	2	614.788901	1227.56325	0.42367	0.00026047	-0.084656	-5.2045E-05	0.33901	0.00020842	614.7888678544157	25.066	0.31446	25.066	24.882	25.197	0					13	5	3	0	0	0	0.022505	1	9001	9001		92.653	62.813	1	24621000			22822	4075	14311	14397	21950	21950					-0.04143033652849226
NTEENRRFY	9	Unmodified	_NTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ALDOA|p.E156Rfs*45|1|0.04|ENSG00000149925|chr16:30068902-30068903|-/AA|frameshift_variant	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	HCT116MG_D190212_S2	2	614.7888793945312	2	614.788901	1227.56325	0.29252	0.00017984	0.027831	1.711E-05	0.32035	0.00019695	614.7888112888386	25.582	0.31251	25.213	25.03	25.343	-0.36914					15	5	4	0	0	0	0.0035707	3	9212	9174;9175;9212		193.29	153.34	1	91156000			22823	4075	14311	14397	21951;21952;21953	21953					-0.04143033652849226
NTEENRRFY	9	Unmodified	_NTEENRRFY_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ALDOA|p.E156Rfs*45|1|0.04|ENSG00000149925|chr16:30068902-30068903|-/AA|frameshift_variant	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MSMS	HCT116MG_D190212_S2	2	410.1944580078125	3	410.195026	1227.56325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.654	1	25.285	24.785	25.785	-0.36914								0	0	0	0.58014	1	9247	9247		24.882	15.338	1				22824	4075	14311	14397	21954	21954					-0.04143033652849226
NTEGDDDDDDD	11	Unmodified	_NTEGDDDDDDD_					0	0	0		CASQ1|p.D389G|1|0.51|ENSG00000143318|chr1:160201351-160201351|A/G|missense_variant	CASQ1|p.D389G|1|0.51|ENSG00000143318|chr1:160201351-160201351|A/G|missense_variant	CASQ1|p.D389G|1|0.51|ENSG00000143318|chr1:160201351-160201351|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	613.306884765625	2	613.184191	1224.35383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.815	1	20.849	20.349	21.349	0.034473								0	0	0	0.95636	1	7220	7220		2.9952	2.3937	1				22825	330	14312	14398	21955	21955					-0.24937410977963737
NTEGDDDDDDD	11	Unmodified	_NTEGDDDDDDD_					0	0	0		CASQ1|p.D389G|1|0.51|ENSG00000143318|chr1:160201351-160201351|A/G|missense_variant	CASQ1|p.D389G|1|0.51|ENSG00000143318|chr1:160201351-160201351|A/G|missense_variant	CASQ1|p.D389G|1|0.51|ENSG00000143318|chr1:160201351-160201351|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	613.5145263671875	2	613.184191	1224.35383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.232	1	31.954	31.454	32.454	-0.27841								0	0	0	0.9598	1	11806	11806		1.1933	0.79263	1				22826	330	14312	14398	21956	21956					-0.24937410977963737
NTEGLHHLY	9	Unmodified	_NTEGLHHLY_					0	0	0		ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000224960|ENST00000412172|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	ENSG00000275052|ENST00000616407|PPP4R3B	MULTI-MSMS	HCT116MG_D190212_S1	1	542.2645874023438	2	542.26453	1082.51451	0.80314	0.00043552	-0.24007	-0.00013018	0.56307	0.00030534	542.2643521439483	28.615	0.31681	28.615	28.482	28.798	0					12	5	3	0	0	0	1.3005E-08	1	10430	10430		232.51	172.12	1	53576000			22827	6676;9663	14313	14399	21957	21957					-0.02344902221943812
NTEGLHHLY	9	Unmodified	_NTEGLHHLY_					0	0	0		ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000224960|ENST00000412172|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	ENSG00000275052|ENST00000616407|PPP4R3B	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2647705078125	2	542.26453	1082.51451	0.47019	0.00025496	0.015523	8.4178E-06	0.48571	0.00026338	542.2644034067928	29.102	0.25627	28.786	28.657	28.914	-0.31613					11	4	3	0	0	0	1.3005E-08	1	10651	10651		232.51	172.12	1	146570000			22828	6676;9663	14313	14399	21958	21958					-0.02344902221943812
NTEGLHHLY	9	Unmodified	_NTEGLHHLY_					0	0	0		ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000224960|ENST00000412172|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	ENSG00000275052|ENST00000616407|PPP4R3B	MULTI-MSMS	HCT116MG_D190212_S2	2	361.8456115722656	3	361.845446	1082.51451	-0.2101	-7.6024E-05	0.72929	0.00026389	0.51919	0.00018787	361.8456519392935	29.102	0.20544	28.786	28.657	28.863	-0.31613					7	3	3	0	0	0	0.47829	1	10671	10671		12.241	3.4953	1	33493000			22829	6676;9663	14313	14399	21959	21959					-0.02344902221943812
NTEKLKLKY	9	Unmodified	_NTEKLKLKY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S1	1	379.56072998046875	3	379.560646	1135.66011	-0.13567	-5.1495E-05	0.086856	3.2967E-05	-0.048815	-1.8528E-05	379.5606722715052	26.735	0.20849	26.735	26.605	26.813	0					9	3	3	0	0	0	0.077982	1	9685	9685		49.527	30.165	1	12669000			22830	6126	14314	14400	21960	21960					0.09770560574224874
NTEKLKLKY	9	Unmodified	_NTEKLKLKY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S1	1	568.8374633789062	2	568.837331	1135.66011	0.33258	0.00018918	-0.23113	-0.00013148	0.10145	5.7708E-05	568.8372297005071	26.735	0.20849	26.735	26.605	26.813	0					5	3	2	0	0	0	0.051033	1	9696	9696		74.2	32.244	1	9752700			22831	6126	14314	14400	21961	21961					0.09770560574224874
NTEKLKLKY	9	Unmodified	_NTEKLKLKY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S2	2	568.837646484375	2	568.837331	1135.66011	0.61214	0.00034821	-0.34172	-0.00019438	0.27041	0.00015382	568.8371871104761	27.249	0.20872	26.897	26.766	26.975	-0.35254					6	3	2	0	0	0	0.01386	1	9914	9914		103.82	31.901	1	30921000			22832	6126	14314	14400	21962	21962					0.09770560574224874
NTEKLKLKY	9	Unmodified	_NTEKLKLKY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-SECPEP	HCT116MG_D190212_S2	2	379.8806457519531	3	379.560646	1135.66011	0.035007	1.3287E-05	0.023998	9.1089E-06	0.059005	2.2396E-05	379.5606910675574	27.249	0.20872	26.897	26.766	26.975	-0.35254					10	3	4	0	0	0	0.13631	1	9896	9896		49.527	30.165	1	30188000			22833	6126	14314	14400	21963	21963					0.09770560574224874
NTEQTLYRGED	11	Unmodified	_NTEQTLYRGED_					0	0	0			REV__nc|ENSG00000087494|P12272-2|PTHLH	REV__nc|ENSG00000087494|P12272-2|PTHLH	MULTI-MSMS	HCT116MG_D190212_S3	3	663.3030395507812	2	663.302038	1324.58952	0.72502	0.0004809	-0.06686	-4.4348E-05	0.65816	0.00043656	663.3018139831452	23.521	0.78173	23.481	23.239	24.021	-0.03968					22	14	2	0	0	0	0.7093	1	8282	8282		18.373	1.2602	1	3936200	+		22834	10951	14315	14401	21964	21964					-0.05978809272028229
NTERTVWQY	9	Unmodified	_NTERTVWQY_					0	0	0		nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	MULTI-MSMS	HCT116MG_D190212_S1	1	598.7884521484375	2	598.78837	1195.56219	0.28004	0.00016768	-0.29914	-0.00017912	-0.019104	-1.1439E-05	598.7882097415475	40.409	0.31072	40.409	40.228	40.539	0					12	5	3	0	0	0	0.0034381	1	15183	15183		160.69	91.585	1	49980000			22835	5546	14316	14402	21965	21965					-0.027772480217663542
NTERTVWQY	9	Unmodified	_NTERTVWQY_					0	0	0		nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	MULTI-MSMS	HCT116MG_D190212_S2	2	598.78857421875	2	598.78837	1195.56219	0.82924	0.00049654	-0.21106	-0.00012638	0.61818	0.00037016	598.7881935167821	40.408	0.46581	40.338	40.105	40.571	-0.069656					25	8	5	0	0	0	7.5242E-05	1	15221	15221		203.64	128.71	1	255840000			22836	5546	14316	14402	21966	21966					-0.027772480217663542
NTERTVWQY	9	Unmodified	_NTERTVWQY_					0	0	0		nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	MULTI-MSMS	HCT116MG_D190212_S2	2	1196.5672607421875	1	1196.56946	1195.56219	0.66458	0.00079521	-0.64892	-0.00077647	0.015663	1.8741E-05	1196.5676223099144	40.382	0.15578	40.311	40.207	40.363	-0.071262					4	2	2	0	0	0	0.0047539	1	15244	15244		139.78	84.279	1	15277000			22837	5546	14316	14402	21967	21967					-0.027772480217663542
NTERTVWQY	9	Unmodified	_NTERTVWQY_					0	0	0		nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	MULTI-MSMS	HCT116MG_D190212_S3	3	598.7886962890625	2	598.78837	1195.56219	0.68223	0.00040851	-0.19059	-0.00011412	0.49164	0.00029439	598.7882827450557	40.647	0.41671	40.345	40.163	40.58	-0.30161					15	7	3	0	0	0	0.0064416	1	15101	15101		125.04	77.289	1	21579000			22838	5546	14316	14402	21968	21968					-0.027772480217663542
NTERTVWQY	9	Unmodified	_NTERTVWQY_					0	0	0		nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	MULTI-MSMS	HCT116MG_D190212_S4	4	598.7880249023438	2	598.78837	1195.56219	1.1844	0.00070923	-0.47187	-0.00028255	0.71256	0.00042667	598.7880629001063	40.807	0.2358	40.429	40.286	40.522	-0.37828					7	4	2	0	0	0	0.11363	1	15001	15001		55.503	29.235	1	3076900			22839	5546	14316	14402	21969	21969					-0.027772480217663542
NTESFGTGIK	10	Unmodified	_NTESFGTGIK_					0	0	0		ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	MSMS	HCT116MG_D190212_S1	1	527.2642822265625	2	527.264196	1052.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.084	1	30.084	29.584	30.584	0								0	0	0	0.49957	1	11020	11020		47.732	2.0324	1				22840	7574	14317	14403	21970	21970					-0.01031741661677188
NTESFGTGIK	10	Unmodified	_NTESFGTGIK_					0	0	0		ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2638549804688	2	527.264196	1052.51384	0.12002	6.3283E-05	-0.58412	-0.00030799	-0.4641	-0.00024471	527.2638764114827	30.406	0.25661	30.122	29.976	30.233	-0.28453					7	4	2	0	0	0	0.023242	1	11181	11181		114.5	52.895	1	37480000			22841	7574	14317	14403	21971	21971					-0.01031741661677188
NTESFGTGIK	10	Unmodified	_NTESFGTGIK_					0	0	0		ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	ENST00000381118.7_1_5:60224765-60240875:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	527.264196	1052.51384	0.24559	0.00012949	-0.20953	-0.00011048	0.036061	1.9014E-05	527.2641785222969	29.971	0.20771	29.971	29.841	30.049	0	-0.075181	5.4497E-05	NaN	114.5	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7169500			22842	7574	14317	14403							-0.01031741661677188
NTFRLHSP	8	Unmodified	_NTFRLHSP_					0	0	0		TBX18|p.K539Nfs*25|1|0.15|ENSG00000112837|chr6:84736895-84736895|G/-|frameshift_variant;ENSG00000112837|ENST00000369663|TBX18	TBX18|p.K539Nfs*25|1|0.15|ENSG00000112837|chr6:84736895-84736895|G/-|frameshift_variant	TBX18|p.K539Nfs*25|1|0.15|ENSG00000112837|chr6:84736895-84736895|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	486.25469970703125	2	486.256508	970.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.421	1	37.12	36.62	37.62	-0.30137								0	0	0	0.8837	1	13860	13860		12.532	2.3482	1				22843	2361	14318	14404	21972	21972					0.012034363317980024
NTIADEGLN	9	Unmodified	_NTIADEGLN_					0	0	0			REV__TRPM7|p.K1804T|1|0.29|ENSG00000092439|chr15:50569943-50569943|T/G|missense_variant	REV__TRPM7|p.K1804T|1|0.29|ENSG00000092439|chr15:50569943-50569943|T/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	473.7274475097656	2	473.727446	945.44034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.728	1	22.709	22.209	23.209	-0.018869								0	0	0	0.22243	1	7989	7989		45.74	5.7902	1		+		22844	18020	14319	14405	21973	21973					-0.03456290104122672
NTIFEELY	8	Unmodified	_NTIFEELY_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	HCT116MG_D190212_S2	2	1028.4921875	1	1028.4935	1027.48623	0.29185	0.00030016	-0.57356	-0.0005899	-0.28171	-0.00028974	1028.4928515800377	53.181	0.26027	52.992	52.809	53.07	-0.18922					6	4	2	0	0	0	0.22822	1	20456	20456		68.081	6.7232	1	16253000	+		22845	12413	14320	14406	21974	21974					-0.02641644921891384
NTIFEELY	8	Unmodified	_NTIFEELY_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	HCT116MG_D190212_S3	3	1028.492919921875	1	1028.4935	1027.48623	0.75706	0.00077863	0.28459	0.0002927	1.0417	0.0010713	1028.4934313522695	53.312	0.31386	53.009	52.826	53.139	-0.30305					9	5	2	0	0	0	0.27593	1	20182	20182		61.357	3.8861	1	5421500	+		22846	12413	14320	14406	21975	21975					-0.02641644921891384
NTIFEELY	8	Unmodified	_NTIFEELY_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1028.4935	1027.48623	0.29185	0.00030016	-0.57356	-0.0005899	-0.28171	-0.00028974	1028.4928515800377	53.181	0.26027	52.992	52.809	53.07	-0.18922	-0.008586	-0.00042913	NaN	68.081	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16253000	+		22847	12413	14320	14406							-0.02641644921891384
NTIFEELY	8	Unmodified	_NTIFEELY_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1028.4935	1027.48623	0.75706	0.00077863	0.28459	0.0002927	1.0417	0.0010713	1028.4934313522695	53.312	0.31386	53.009	52.826	53.139	-0.30305	0.008586	0.00045347	NaN	68.081	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5421500	+		22848	12413	14320	14406							-0.02641644921891384
NTISTGLLY	9	Unmodified	_NTISTGLLY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.Q86Rfs*17|1|0.08|ENSG00000139218|chr12:45951691-45951691|G/-|frameshift_variant;SCAF11|p.K104Nfs*3|1|0.09|ENSG00000139218|chr12:45948523-45948523|T/-|frameshift_variant;ENST00000474828.1_1_12:46355467-46384201:-|nuORF;SCAF11|p.Q105Tfs*11|1|0.19|ENSG00000139218|chr12:45948522-45948523|-/T|frameshift_variant;ENST00000547018.5_1_12:46345524-46385838:-|nuORF;SCAF11|p.P271Sfs*56|1|0.32|ENSG00000139218|chr12:45931536-45931537|-/A|frameshift_variant;SCAF11|p.Q367Afs*32|1|0.18|ENSG00000139218|chr12:45928603-45928604|-/T|frameshift_variant;SCAF11|p.L495Tfs*9|1|0.07|ENSG00000139218|chr12:45928218-45928219|-/T|frameshift_variant;SCAF11|p.T602Qfs*5|1|0.33|ENSG00000139218|chr12:45927897-45927897|T/-|frameshift_variant;SCAF11|p.K853Rfs*46|1|0.06|ENSG00000139218|chr12:45927143-45927143|T/-|frameshift_variant	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	HCT116MG_D190212_S1	1	981.52490234375	1	981.525138	980.517862	0.41198	0.00040437	-0.59469	-0.00058371	-0.18271	-0.00017934	981.5248167945505	50.151	0.15481	50.151	50.059	50.214	0					4	2	2	0	0	0	0.027442	1	19152	19152		88.954	19.849	1	9224100			22849	3612	14321	14407	21976	21976					0.02682347832035248
NTISTGLLY	9	Unmodified	_NTISTGLLY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.Q86Rfs*17|1|0.08|ENSG00000139218|chr12:45951691-45951691|G/-|frameshift_variant;SCAF11|p.K104Nfs*3|1|0.09|ENSG00000139218|chr12:45948523-45948523|T/-|frameshift_variant;ENST00000474828.1_1_12:46355467-46384201:-|nuORF;SCAF11|p.Q105Tfs*11|1|0.19|ENSG00000139218|chr12:45948522-45948523|-/T|frameshift_variant;ENST00000547018.5_1_12:46345524-46385838:-|nuORF;SCAF11|p.P271Sfs*56|1|0.32|ENSG00000139218|chr12:45931536-45931537|-/A|frameshift_variant;SCAF11|p.Q367Afs*32|1|0.18|ENSG00000139218|chr12:45928603-45928604|-/T|frameshift_variant;SCAF11|p.L495Tfs*9|1|0.07|ENSG00000139218|chr12:45928218-45928219|-/T|frameshift_variant;SCAF11|p.T602Qfs*5|1|0.33|ENSG00000139218|chr12:45927897-45927897|T/-|frameshift_variant;SCAF11|p.K853Rfs*46|1|0.06|ENSG00000139218|chr12:45927143-45927143|T/-|frameshift_variant	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	HCT116MG_D190212_S2	2	981.526123046875	1	981.525138	980.517862	0.73513	0.00072155	-0.38621	-0.00037908	0.34892	0.00034248	981.5248514384656	50.336	0.36602	50.164	49.985	50.351	-0.1719					14	6	3	0	0	0	0.016701	1	19293	19293		99.799	21.815	1	76358000			22850	3612	14321	14407	21977	21977					0.02682347832035248
NTISTGLLY	9	Unmodified	_NTISTGLLY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.Q86Rfs*17|1|0.08|ENSG00000139218|chr12:45951691-45951691|G/-|frameshift_variant;SCAF11|p.K104Nfs*3|1|0.09|ENSG00000139218|chr12:45948523-45948523|T/-|frameshift_variant;ENST00000474828.1_1_12:46355467-46384201:-|nuORF;SCAF11|p.Q105Tfs*11|1|0.19|ENSG00000139218|chr12:45948522-45948523|-/T|frameshift_variant;ENST00000547018.5_1_12:46345524-46385838:-|nuORF;SCAF11|p.P271Sfs*56|1|0.32|ENSG00000139218|chr12:45931536-45931537|-/A|frameshift_variant;SCAF11|p.Q367Afs*32|1|0.18|ENSG00000139218|chr12:45928603-45928604|-/T|frameshift_variant;SCAF11|p.L495Tfs*9|1|0.07|ENSG00000139218|chr12:45928218-45928219|-/T|frameshift_variant;SCAF11|p.T602Qfs*5|1|0.33|ENSG00000139218|chr12:45927897-45927897|T/-|frameshift_variant;SCAF11|p.K853Rfs*46|1|0.06|ENSG00000139218|chr12:45927143-45927143|T/-|frameshift_variant	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	HCT116MG_D190212_S3	3	981.5250244140625	1	981.525138	980.517862	0.70633	0.00069328	-0.6341	-0.00062239	0.072228	7.0894E-05	981.5244669203283	50.517	0.26064	50.203	50.073	50.333	-0.31381					6	4	2	0	0	0	0.016701	1	19081	19081		99.799	17.909	1	5380700			22851	3612	14321	14407	21978	21978					0.02682347832035248
NTKEASQY	8	Unmodified	_NTKEASQY_					0	0	0		ENSG00000196353|ENST00000429747|CPNE4;nc|ENSG00000196353|Q96A23-2|CPNE4	ENSG00000196353|ENST00000429747|CPNE4	ENSG00000196353|ENST00000429747|CPNE4	MULTI-MSMS	HCT116MG_D190212_S1	1	470.72222900390625	2	470.722164	939.429775	0.47843	0.00022521	-0.23614	-0.00011116	0.24229	0.00011405	470.7218693724995	17.437	0.20891	17.437	17.307	17.516	0					6	3	2	0	0	0	0.19352	1	5947	5947		74.929	1.9611	1	6346800			22852	6061	14322	14408	21979	21979					-0.042362727585668836
NTKIKRIY	8	Unmodified	_NTKIKRIY_					0	0	0		CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant;nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant	CLSPN|p.N242Kfs*21|1|0.1|ENSG00000092853|chr1:35763178-35763179|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	518.317626953125	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.815	1	44.506	44.006	45.006	-0.30927								0	0	0	0.8837	1	16762	16762		2.3027	0.4585	1				22853	481	14323	14409	21980	21980					0.10773728468188892
NTMESALQY	9	Unmodified	_NTMESALQY_					0	0	0		nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3039499-3039766:-|nuORF	nc|ENSG00000110619|P49589-2|CARS1	nc|ENSG00000110619|P49589-2|CARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	528.7371215820312	2	528.736957	1055.45936	0.36385	0.00019238	0.062795	3.3202E-05	0.42664	0.00022558	528.7368767009822	42.045	0.57306	42.045	41.602	42.175	0					19	10	3	0	0	0	0.030723	1	15755	15755		85.642	31.809	1	48988000			22854	2253	14324	14410	21981	21981					-0.06615076804723685
NTMESALQY	9	Unmodified	_NTMESALQY_					0	0	0		nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3039499-3039766:-|nuORF	nc|ENSG00000110619|P49589-2|CARS1	nc|ENSG00000110619|P49589-2|CARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	528.7369384765625	2	528.736957	1055.45936	0.44178	0.00023358	0.1238	6.5459E-05	0.56558	0.00029904	528.7369645345121	42.058	0.67393	41.99	41.549	42.223	-0.068199					17	12	2	0	0	0	0.066823	1	15814	15814		66.457	16.524	1	88430000			22855	2253	14324	14410	21982	21982					-0.06615076804723685
NTPSLWLSM	9	Unmodified	_NTPSLWLSM_					0	0	0		ENST00000591611.5_1_17:57955667-57970063:-|nuORF	ENST00000591611.5_1_17:57955667-57970063:-|nuORF	ENST00000591611.5_1_17:57955667-57970063:-|nuORF	MSMS	HCT116MG_D190212_S1	1	350.1749572753906	3	350.175915	1047.50592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.495	1	57.495	56.995	57.995	0								0	0	0	0.76818	1	22125	22125		4.5289	1.2092	1				22856	9035	14325	14411	21983	21983					-0.015935921828031496
NTSAKAGV	8	Unmodified	_NTSAKAGV_					0	0	0			REV__ENST00000413010.5_1_2:171884913-172016941:-|nuORF	REV__ENST00000413010.5_1_2:171884913-172016941:-|nuORF	MSMS	HCT116MG_D190212_S3	3	374.2020568847656	2	374.20341	746.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.791	1	23.73	23.23	24.23	-0.061449								0	0	0	0.8837	1	8417	8417		4.756	0	1		+		22857	14133	14326	14412	21984	21984					0.008926807664806802
NTSRLKQK	8	Unmodified	_NTSRLKQK_					0	0	0		nc|ENSG00000197912|Q9UQ90-2|SPG7;ENSG00000197912|ENST00000645818|SPG7	nc|ENSG00000197912|Q9UQ90-2|SPG7	nc|ENSG00000197912|Q9UQ90-2|SPG7	MULTI-MSMS	HCT116MG_D190212_S2	2	488.2795715332031	2	487.790715	973.566878	0.24209	0.00011809	0.28316	0.00013812	0.52525	0.00025621	487.79076182041064	45.494	1.7551	45.402	44.683	46.439	-0.092472					63	33	2	0	0	0	0.80542	1	17306	17306		10.824	3.5347	1	50057000			22858	6186	14327	14413	21985	21985					0.07903680911670108
NTWILASY	8	Unmodified	_NTWILASY_					0	0	0			REV__ENSG00000162927|ENST00000316752|PUS10	REV__ENSG00000162927|ENST00000316752|PUS10	MSMS	HCT116MG_D190212_S1	1	483.89239501953125	2	484.247818	966.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.46	1	25.46	24.96	25.96	0								0	0	0	0.85589	1	9159	9159		18.135	3.2967	1		+		22859	12899	14328	14414	21986	21986					-0.0034990399386742865
NTYETKRDIY	10	Unmodified	_NTYETKRDIY_					0	0	0		SPO11|p.A131E|1|0.14|ENSG00000054796|chr20:57333744-57333744|C/A|missense_variant	SPO11|p.A131E|1|0.14|ENSG00000054796|chr20:57333744-57333744|C/A|missense_variant	SPO11|p.A131E|1|0.14|ENSG00000054796|chr20:57333744-57333744|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	434.8822021484375	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.577	1	64.344	63.844	64.844	-0.23296								0	0	0	0.96911	1	24293	24293		0.15932	0	1				22860	18231	14329	14415	21987	21987					-0.013567270243584062
NTYQIENKKF	10	Unmodified	_NTYQIENKKF_					0	0	0		tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	tr|U7SJJ2|U7SJJ2_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02067PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	429.088623046875	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1302	1	7.1302	6.6302	7.6302	0								0	0	0	0.97045	1	2151	2151		0.15932	0	1				22861	18317	14330	14416	21988	21988					0.020521672179029338
NTYSVHLN	8	Unmodified	_NTYSVHLN_					0	0	0			REV__ENSG00000143971|ENST00000272342|ETAA1	REV__ENSG00000143971|ENST00000272342|ETAA1	MULTI-SECPEP	HCT116MG_D190212_S1	1	474.72479248046875	2	474.232699	946.450845	0.24066	0.00011413	0.20938	9.9297E-05	0.45004	0.00021343	474.2328853051594	31.727	0.46927	31.727	31.492	31.961	0					13	8	2	0	0	0	0.28693	1	11673	11673		21.537	21.537	1	14258000	+		22862	12410	14331	14417	21989	21989					-0.0245226265905103
NTYSVHLN	8	Unmodified	_NTYSVHLN_					0	0	0			REV__ENSG00000143971|ENST00000272342|ETAA1	REV__ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	HCT116MG_D190212_S2	2	474.22540283203125	2	474.232699	946.450845	0.41715	0.00019783	0.15084	7.1534E-05	0.568	0.00026936	474.2327033881055	31.821	0.7774	31.572	31.406	32.183	-0.24883					27	14	3	0	0	0	0.61235	1	11742	11742		31.268	0.6318	1	42274000	+		22863	12410	14331	14417	21990	21990					-0.0245226265905103
NTYSVHLN	8	Unmodified	_NTYSVHLN_					0	0	0			REV__ENSG00000143971|ENST00000272342|ETAA1	REV__ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	HCT116MG_D190212_S3	3	474.2325134277344	2	474.232699	946.450845	0.093301	4.4246E-05	0.5171	0.00024523	0.6104	0.00028947	474.2328551985564	32.038	0.6242	31.76	31.474	32.098	-0.27841					28	11	3	0	0	0	0.53366	1	11701	11701		38.176	0.024387	1	38318000	+		22864	12410	14331	14417	21991	21991					-0.0245226265905103
NVAEENTRVLY	11	Unmodified	_NVAEENTRVLY_					0	0	0		ENST00000485067.1_1_21:30426080-30426505:+|nuORF;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	ENST00000485067.1_1_21:30426080-30426505:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	654.7648315429688	2	654.333141	1306.65173	0.49564	0.00032432	1.9152	0.0012532	2.4109	0.0015775	654.3332785482305	23.601	0.94008	23.354	22.748	23.688	-0.24775					35	17	3	0	0	0	0.35292	1	8358	8358		15.248	4.449	1	4257700			22865	4279	14332	14418	21992	21992					0.010669618669680858
NVDDPTGNF	9	Unmodified	_NVDDPTGNF_					0	0	0		ENSG00000169223|ENST00000303127|LMAN2;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	MULTI-MSMS	HCT116MG_D190212_S2	2	978.4159545898438	1	978.416316	977.40904	1.0877	0.0010642	-0.44868	-0.000439	0.63902	0.00062523	978.4158793033802	35.93	0.25816	35.802	35.658	35.916	-0.12799					7	4	2	0	0	0	0.019537	1	13442	13442		96.936	62.534	1	15742000			22866	5060	14333	14419	21993	21993					-0.08056863138233439
NVDDPTGNF	9	Unmodified	_NVDDPTGNF_					0	0	0		ENSG00000169223|ENST00000303127|LMAN2;ENST00000504071.1_1_5:176759089-176761465:-|nuORF;ENST00000515209.5_1_5:176759089-176761331:-|nuORF	ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	MULTI-MSMS	HCT116MG_D190212_S3	3	978.4169311523438	1	978.416316	977.40904	0.33352	0.00032632	-0.25543	-0.00024992	0.078083	7.6398E-05	978.41616510526	36.108	0.31203	35.807	35.626	35.938	-0.30042					8	5	2	0	0	0	0.0036431	1	13347	13347		155.95	110.25	1	6867000			22867	5060	14333	14419	21994	21994					-0.08056863138233439
NVDPDNVVL	9	Unmodified	_NVDPDNVVL_					0	0	0		ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	MULTI-MSMS	HCT116MG_D190212_S2	2	984.4998168945312	1	984.499652	983.492375	0.89861	0.00088468	-0.057024	-5.614E-05	0.84158	0.00082854	984.4995819806603	45.062	0.36628	44.97	44.787	45.153	-0.092472					9	6	2	0	0	0	0.0067688	1	17134	17134		122.18	14.992	1	26861000			22868	2531	14334	14420	21995	21995					-3.126690376120678E-05
NVDPDNVVL	9	Unmodified	_NVDPDNVVL_					0	0	0		ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	ENSG00000116717|ENST00000370986|GADD45A	MULTI-MSMS	HCT116MG_D190212_S3	3	984.5001220703125	1	984.499652	983.492375	0.87171	0.0008582	0.11636	0.00011456	0.98807	0.00097276	984.4995118928751	45.303	0.31314	44.993	44.784	45.097	-0.31013					9	5	2	0	0	0	0.011082	1	16982	16982		110.67	3.4877	1	3253400			22869	2531	14334	14420	21996	21996					-3.126690376120678E-05
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	536.7567138671875	2	536.756538	1071.49852	0.39242	0.00021063	0.14568	7.8196E-05	0.5381	0.00028883	536.7565419679951	26.944	0.4164	26.944	26.709	27.125	0					14	7	2	0	0	0	0.034046	1	9743	9743		82.529	48.128	1	43627000			22870	80	14335	14421	21997	21997					-0.03436608458855517
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	536.7568359375	2	536.756538	1071.49852	0.72669	0.00039006	0.24658	0.00013235	0.97327	0.00052241	536.7566478177569	27.351	0.46666	26.999	26.766	27.232	-0.35254					23	8	4	0	0	0	0.026999	1	9912	9912		89.401	54.999	1	116770000			22871	80	14335	14421	21998	21998					-0.03436608458855517
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1072.5091552734375	1	1072.5058	1071.49852	0.75323	0.00080784	1.0138	0.0010873	1.767	0.0018952	1072.5074536286684	27.301	0.259	26.949	26.818	27.077	-0.35254					7	4	2	0	0	0	0.0048001	1	9945	9945		139.38	97.538	1	11708000			22872	80	14335	14421	21999	21999					-0.03436608458855517
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	536.7574462890625	2	536.756538	1071.49852	0.49474	0.00026556	0.80954	0.00043453	1.3043	0.00070008	536.7569496296113	27.211	0.46873	27.042	26.807	27.276	-0.16933					16	8	3	0	0	0	0.066823	1	9797	9797		66.457	35.82	1	21133000			22873	80	14335	14421	22000	22000					-0.03436608458855517
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;AGRN|p.P627Rfs*105|2|0.32|ENSG00000188157|chr1:1043899-1043899|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	536.7578735351562	2	536.756538	1071.49852	0.51724	0.00027763	1.3155	0.0007061	1.8327	0.00098373	536.7573410535646	27.365	0.25954	27.054	26.899	27.158	-0.3114					9	4	3	0	0	0	0.34272	1	9829	9829		26.268	4.7312	1	3078800			22874	80	14335	14421	22001	22001					-0.03436608458855517
NVDSNEQGSY	10	Unmodified	_NVDSNEQGSY_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S3	3	556.7280883789062	2	556.728175	1111.4418	0.35341	0.00019675	-0.7292	-0.00040596	-0.37579	-0.00020921	556.7277874326633	21.543	0.31763	21.562	21.377	21.694	0.018446					7	5	2	0	0	0	0.26262	1	7514	7514		53.833	36.72	1	3692900			22875	4969	14336	14422	22002	22002					-0.10946700806016452
NVEKKIDKY	9	Unmodified	_NVEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S1	1	379.5482482910156	3	379.548518	1135.62372	-0.20581	-7.8115E-05	0.062976	2.3902E-05	-0.14283	-5.4213E-05	379.54849464776834	18.74	0.41702	18.74	18.558	18.975	0					17	7	4	0	0	0	0.034046	1	6449	6449		67.081	28.466	1	103490000			22876	3762	14337	14423	22003	22003					0.06133683677512636
NVEKKIDKY	9	Unmodified	_NVEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S1	1	568.8193359375	2	568.819138	1135.62372	0.26227	0.00014918	0.23609	0.00013429	0.49836	0.00028348	568.8192344756017	18.738	0.31268	18.738	18.558	18.871	0					17	5	5	0	0	0	0.0028865	1	6460	6460		182.24	60.891	1	81850000			22877	3762	14337	14423	22004	22004					0.06133683677512636
NVEKKIDKY	9	Unmodified	_NVEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S2	2	568.819580078125	2	568.819138	1135.62372	0.40641	0.00023117	-0.15417	-8.7696E-05	0.25224	0.00014348	568.8190879204902	19.492	0.46828	19.122	18.94	19.408	-0.3695					26	8	5	0	0	0	6.4556E-08	1	6744	6744		220.1	67.213	1	700180000			22878	3762	14337	14423	22005	22005					0.06133683677512636
NVEKKIDKY	9	Unmodified	_NVEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S2	2	379.54840087890625	3	379.548518	1135.62372	-0.16882	-6.4076E-05	-0.14292	-5.4245E-05	-0.31174	-0.00011832	379.548460879679	19.492	0.41614	19.122	18.94	19.356	-0.3695					24	7	5	0	0	0	0.0058997	1	6762	6762		107.56	50.314	1	408120000			22879	3762	14337	14423	22006	22006					0.06133683677512636
NVEKKIDKY	9	Unmodified	_NVEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S3	3	568.819091796875	2	568.819138	1135.62372	0.38641	0.0002198	0.10298	5.8576E-05	0.48939	0.00027837	568.8191205173463	18.207	0.31264	18.283	18.153	18.465	0.076334					11	5	3	0	0	0	0.0034966	1	6169	6169		166.77	49.009	1	28370000			22880	3762	14337	14423	22007	22007					0.06133683677512636
NVEKKIDKY	9	Unmodified	_NVEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S3	3	379.5484619140625	3	379.548518	1135.62372	-0.12889	-4.8919E-05	0.095465	3.6234E-05	-0.033422	-1.2685E-05	379.5484922108494	18.207	0.36482	18.283	18.153	18.518	0.076334					17	6	4	0	0	0	0.0094709	1	6170	6170		93.938	40.534	1	32548000			22881	3762	14337	14423	22008	22008					0.06133683677512636
NVEKKIDKY	9	Unmodified	_NVEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S4	4	568.8189086914062	2	568.819138	1135.62372	0.43229	0.0002459	-0.14271	-8.1175E-05	0.28959	0.00016472	568.818823242283	18.666	0.20803	18.485	18.355	18.563	-0.18052					5	3	2	0	0	0	0.07649	1	6305	6305		62.869	22.629	1	3268300			22882	3762	14337	14423	22009	22009					0.06133683677512636
NVEKKIDKY	9	Unmodified	_NVEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S4	4	379.54840087890625	3	379.548518	1135.62372	-0.045258	-1.7177E-05	-0.14375	-5.456E-05	-0.18901	-7.1737E-05	379.548379755368	18.666	0.25997	18.485	18.355	18.615	-0.18052					8	4	3	0	0	0	0.33364	1	6308	6308		31.636	15.07	1	2353400			22883	3762	14337	14423	22010	22010					0.06133683677512636
NVEKYEEQNKP	11	Unmodified	_NVEKYEEQNKP_					0	0	0			REV__ENSG00000088325|ENST00000300403|TPX2	REV__ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S3	3	689.3355712890625	2	689.335881	1376.65721	0.83182	0.0005734	-0.56942	-0.00039252	0.2624	0.00018088	689.3352897103655	21.474	0.73658	21.492	21.115	21.851	0.018446					22	13	3	0	0	0	0.73618	1	7462	7462		8.4443	8.4443	1	4514500	+		22884	10956	14338	14424	22011	22011					-0.016053593412379996
NVFFNTKF	8	Unmodified	_NVFFNTKF_					0	0	0			REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56	REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56	MSMS	HCT116MG_D190212_S3	3	508.7655334472656	2	508.763635	1015.51272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.762	1	28.543	28.043	29.043	-0.21841								0	0	0	0.82692	1	10422	10422		20.454	1.1966	1		+		22885	17207	14339	14425	22012	22012					0.005580887600899587
NVFWPKEP	8	Unmodified	_NVFWPKEP_					0	0	0		GPHN|p.E468Nfs*21|1|0.39|ENSG00000171723|chr14:67113043-67113043|G/-|frameshift_variant	GPHN|p.E468Nfs*21|1|0.39|ENSG00000171723|chr14:67113043-67113043|G/-|frameshift_variant	GPHN|p.E468Nfs*21|1|0.39|ENSG00000171723|chr14:67113043-67113043|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	508.7633361816406	2	508.763635	1015.51272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.737	1	32.452	31.952	32.952	-0.28511								0	0	0	0.71912	1	12009	12009		29.082	0	1				22886	9188	14340	14426	22013	22013					0.005580887600899587
NVIASLASRP	10	Unmodified	_NVIASLASRP_					0	0	0			REV__nc|ENSG00000111058|Q9H6R3-2|ACSS3	REV__nc|ENSG00000111058|Q9H6R3-2|ACSS3	MULTI-MSMS	HCT116MG_D190212_S2	2	514.2986450195312	2	514.298373	1026.58219	0.37138	0.000191	0.049868	2.5647E-05	0.42125	0.00021665	514.2982588182193	51.952	1.0305	51.768	51.115	52.145	-0.18369					44	19	3	0	0	0	0.80632	1	20033	20033		11.495	0	1	39146000	+		22887	11420	14341	14427	22014	22014					0.0699654770885445
NVIERLQEA	9	Unmodified	_NVIERLQEA_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	MULTI-MSMS	HCT116MG_D190212_S2	2	536.2927856445312	2	536.293288	1070.57202	0.31029	0.0001664	-0.2523	-0.00013531	0.057982	3.1095E-05	536.2931048749093	37.341	0.25771	37.238	37.078	37.335	-0.10318					8	4	2	0	0	0	0.45684	1	13994	13994		19.362	3.5148	1	32827000			22888	2945	14342	14428	22015	22015					0.039559399836207376
NVIKHVETK	9	Unmodified	_NVIKHVETK_					0	0	0			REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A	REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MSMS	HCT116MG_D190212_S4	4	534.3125	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.929	1	30.565	30.065	31.065	-0.36416								0	0	0	0.76902	1	11204	11204		4.3292	0	1		+		22889	12605	14343	14429	22016	22016					0.08285120742925756
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	HCT116MG_D190212_S2	2	428.256591796875	3	428.256954	1281.74903	0.19411	8.3128E-05	0.65465	0.00028036	0.84875	0.00036348	428.25710335446604	52.282	1.7013	52.094	51.266	52.968	-0.18725					53	32	2	0	0	0	0.74191	1	20420	20420		0.40827	0.40827	1	23684000			22890	3169	14344	14430	22017	22017					0.11942833377111128
NVKKIKPWF	9	Unmodified	_NVKKIKPWF_					0	0	0			REV__PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant	REV__PARP14|p.N1416Efs*19|1|0.2|ENSG00000173193|chr3:122718388-122718389|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	387.2378845214844	3	387.237726	1158.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6203	1	9.6203	9.1203	10.12	0								0	0	0	0.77018	1	2920	2920		0.26902	0	1		+		22891	13420	14345	14431	22018	22018					0.11835178398973767
NVKKVKIIL	9	Unmodified	_NVKKVKIIL_					0	0	0		tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	tr|U7SU72|U7SU72_FUSNUCelldivisionproteinFtsI(Penicillin-bindingprotein3)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01125PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	527.8712158203125	2	527.870977	1053.7274	0.42939	0.00022666	0.26286	0.00013876	0.69226	0.00036542	527.8711462316193	54.569	0.20341	54.379	54.252	54.456	-0.1894					8	3	3	0	0	0	0.74917	1	21036	21036		1.8442	0	1	29430000			22892	18467	14346	14432	22019	22019					0.20268635575848748
NVKSLNELFN	10	Unmodified	_NVKSLNELFN_					0	0	0			REV__tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	REV__tr|U7SU78|U7SU78_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01130PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	393.2122497558594	3	393.211906	1176.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.051	1	40.674	40.174	41.174	-0.37732								0	0	0	0.95511	1	15083	15083		3.5871	0	1		+		22893	17822	14347	14433	22020	22020					0.0326449567214695
NVKTTEEYP	9	Unmodified	_NVKTTEEYP_					0	0	0		ENST00000577511.1_2_17:72466185-72466290:+|nuORF	ENST00000577511.1_2_17:72466185-72466290:+|nuORF	ENST00000577511.1_2_17:72466185-72466290:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	540.488037109375	2	540.764029	1079.5135	0.795	0.00042991	0.20113	0.00010877	0.99613	0.00053867	540.7642022596744	33.294	0.98476	33.101	32.758	33.742	-0.19297					39	18	3	0	0	0	0.21838	1	12248	12248		14.838	0	1	87550000			22894	8932	14348	14434	22021	22021					-0.023071613815318415
NVLGKSQKYKE	11	Unmodified	_NVLGKSQKYKE_					0	0	0		nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	nc|ENSG00000125247|Q5T4D3-4|TMTC4	nc|ENSG00000125247|Q5T4D3-4|TMTC4	MSMS	HCT116MG_D190212_S1	1	647.3597412109375	2	647.361702	1292.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.537	1	23.537	23.037	24.037	0								0	0	0	0.94538	1	8387	8387		8.7454	2.0222	1				22895	2875	14349	14435	22022	22022					0.07420429143326146
NVLHYGPA	8	Unmodified	_NVLHYGPA_					0	0	0		tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	tr|U7T730|U7T730_FUSNUMajorcapsidproteinEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00096PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	435.72625732421875	2	435.727052	869.439552	-0.026417	-1.151E-05	-1.0215	-0.00044509	-1.0479	-0.0004566	435.72651449440286	43.302	0.31237	43.302	43.16	43.472	0					11	5	3	0	0	0	0.84759	1	16368	16368		5.7604	0.52976	1	22421000			22896	18650	14350	14436	22023	22023					-0.0003903996253029618
NVLIIVRPDI	10	Unmodified	_NVLIIVRPDI_					0	0	0			REV__OPCML|p.I218Nfs*28|1|0.22|ENSG00000183715|chr11:132437233-132437234|-/T|frameshift_variant	REV__OPCML|p.I218Nfs*28|1|0.22|ENSG00000183715|chr11:132437233-132437234|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	576.3590087890625	2	576.360973	1150.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.397	1	52.209	51.709	52.709	-0.18725								0	0	0	0.95089	1	20127	20127		4.5289	0.93237	1		+		22897	13775	14351	14437	22024	22024					0.13806839845233299
NVLKLFLFY	9	Unmodified	_NVLKLFLFY_					0	0	0		ENST00000359933.5_1_14:96749930-96750203:-|nuORF	ENST00000359933.5_1_14:96749930-96750203:-|nuORF	ENST00000359933.5_1_14:96749930-96750203:-|nuORF	MSMS	HCT116MG_D190212_S3	3	578.8433837890625	2	578.841885	1155.66922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.388	1	44.081	43.581	44.581	-0.30759								0	0	0	0.7689	1	16592	16592		4.756	0.42677	1				22898	7342	14352	14438	22025	22025					0.09760953930572214
NVLLSLRITV	10	Unmodified	_NVLLSLRITV_					0	0	0		ENSG00000183185|ENST00000472788|GABRR3	ENSG00000183185|ENST00000472788|GABRR3	ENSG00000183185|ENST00000472788|GABRR3	MSMS	HCT116MG_D190212_S2	2	564.3589477539062	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.044	1	52.855	52.355	53.355	-0.18922								0	0	0	0.95507	1	20390	20390		3.5965	0	1				22899	5703	14353	14439	22026	22026					0.14910839845219925
NVLMRSVP	8	Unmodified	_NVLMRSVP_					0	0	0			REV__tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	REV__tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	458.2595520019531	2	458.257662	914.500772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.207	1	34.908	34.408	35.408	-0.29922								0	0	0	0.8837	1	12987	12987		7.2892	0.56607	1		+		22900	17896	14354	14440	22027	22027					0.04010148745260267
NVLMRSVP	8	Unmodified	_NVLMRSVP_					0	0	0			REV__tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	REV__tr|U7T0H7|U7T0H7_FUSNUAcetaldehydedehydrogenase(Acetylating)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00826PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	458.2595520019531	2	458.257662	914.500772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.19	1	34.804	34.304	35.304	-0.38606								0	0	0	0.8837	1	12879	12879		4.756	0	1		+		22901	17896	14354	14440	22028	22028					0.04010148745260267
NVLRRETWQHL	11	Unmodified	_NVLRRETWQHL_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-5|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-5|XRRA1	MSMS	HCT116MG_D190212_S1	1	726.397705078125	2	726.396941	1450.77933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.446	1	24.446	23.946	24.946	0								0	0	0	0.95636	1	8751	8751		2.9952	0.26005	1		+		22902	13106	14355	14441	22029	22029					0.07197147251667957
NVLTLVQET	9	Unmodified	_NVLTLVQET_					0	0	0			REV__ENSG00000163902|ENST00000296255|RPN1	REV__ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	HCT116MG_D190212_S4	4	508.26495361328125	2	508.784764	1015.55498	0.24647	0.0001254	0.25265	0.00012855	0.49912	0.00025395	509.2863494527153	36.652	0.20511	36.267	36.126	36.331	-0.38486					5	3	2	0	0	0	0.23771	1	13383	13383		20.454	6.5476	1	2438500	+		22903	12957	14356	14442	22030	22030					0.04782019377819324
NVNITAVGSFN	11	Unmodified	_NVNITAVGSFN_					0	0	0		nc|ENSG00000102804|Q15714-4|TSC22D1;TSC22D1|p.G422Vfs*22|1|0.28|ENSG00000102804|chr13:44574812-44574812|T/-|frameshift_variant;TSC22D1|p.F419Sfs*26|1|0.15|ENSG00000102804|chr13:44574821-44574822|-/AT|frameshift_variant;TSC22D1|p.T849Nfs*19|1|0.34|ENSG00000102804|chr13:44573531-44573532|-/G|frameshift_variant;ENSG00000102804|ENST00000458659|TSC22D1	nc|ENSG00000102804|Q15714-4|TSC22D1	nc|ENSG00000102804|Q15714-4|TSC22D1	MSMS	HCT116MG_D190212_S2	2	379.1976013183594	3	379.196256	1134.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.614	1	33.422	32.922	33.922	-0.19297								0	0	0	0.94416	1	12479	12479		4.7159	0.83959	1				22904	9407	14357	14443	22031	22031					0.005036361210159157
NVPDLTPPGAP	11	Unmodified	_NVPDLTPPGAP_					0	0	0			REV__ENST00000471818.1_1_6:31936126-31936727:+|nuORF	REV__ENST00000471818.1_1_6:31936126-31936727:+|nuORF	MSMS	HCT116MG_D190212_S4	4	539.2520141601562	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.681	1	24.413	23.913	24.913	-0.26881								0	0	0	0.93717	1	8709	8709		13.042	2.9685	1		+		22905	14192	14358	14444	22032	22032					0.015011352350256857
NVPNVYPAAP	10	Unmodified	_NVPNVYPAAP_					0	0	0		ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	MSMS	HCT116MG_D190212_S2	2	521.236083984375	2	521.271824	1040.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.148	1	15.813	15.313	16.313	-0.33451								0	0	0	0.90023	1	5415	5415		15.847	2.3393	1				22906	57	14359	14445	22033	22033					0.010451699261693648
NVQESHEDY	9	Unmodified	_NVQESHEDY_					0	0	0			REV__APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	REV__APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	560.7271728515625	2	560.730717	1119.44688	0.6418	0.00035988	-3.5233	-0.0019756	-2.8815	-0.0016158	560.7290173413204	29.555	0.56825	29.254	29.031	29.599	-0.30095					14	10	2	0	0	0	0.53593	1	10849	10849		14.838	0.93222	1	10132000	+		22907	9958	14360	14446	22034	22034					-0.10806396943416985
NVQESHEDY	9	Unmodified	_NVQESHEDY_					0	0	0			REV__APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	REV__APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	560.730717	1119.44688	0.60121	0.00033712	-6.727	-0.003772	-6.1257	-0.0034349	560.7267433489601	29.172	0.15676	29.172	29.06	29.216	0	-0.041415	-0.00075972	NaN	14.838	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1541100	+		22908	9958	14360	14446							-0.10806396943416985
NVQESHEDY	9	Unmodified	_NVQESHEDY_					0	0	0			REV__APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	REV__APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	560.730717	1119.44688	0.6418	0.00035988	-3.5233	-0.0019756	-2.8815	-0.0016158	560.7290173413204	29.555	0.56825	29.254	29.031	29.599	-0.30095	0.041415	0.002833	NaN	14.838	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10132000	+		22909	9958	14360	14446							-0.10806396943416985
NVSSPWQPSS	10	Unmodified	_NVSSPWQPSS_					0	0	0			REV__MCPH1|p.P771Qfs*8|1|0.21|ENSG00000147316|chr8:6621546-6621546|C/-|frameshift_variant	REV__MCPH1|p.P771Qfs*8|1|0.21|ENSG00000147316|chr8:6621546-6621546|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	544.7733154296875	2	544.753995	1087.49344	0.47256	0.00025743	-0.22921	-0.00012487	0.24334	0.00013256	544.7537947886508	29.876	1.0916	29.519	28.817	29.909	-0.3571					39	20	3	0	0	0	0.59588	1	10802	10802		28.495	0	1	15204000	+		22910	17010	14361	14447	22035	22035					-0.04680912321487085
NVTPFFSLNHR	11	Unmodified	_NVTPFFSLNHR_					0	0	0			REV__nc|ENSG00000138380|Q8N187-3|CARF	REV__nc|ENSG00000138380|Q8N187-3|CARF	MSMS	HCT116MG_D190212_S3	3	666.1904907226562	2	666.346386	1330.67822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.342	1	24.26	23.76	24.76	-0.081791								0	0	0	0.94269	1	8640	8640		10.151	0.76745	1		+		22911	12221	14362	14448	22036	22036					0.02610695548946751
NVTPKWPAYM	10	Unmodified	_NVTPKWPAYM_					0	0	0			REV__nc|ENSG00000105695|P20916-2|MAG	REV__nc|ENSG00000105695|P20916-2|MAG	MULTI-MSMS	HCT116MG_D190212_S3	3	605.0117797851562	2	603.802434	1205.59032	0.47981	0.00028971	-0.065706	-3.9673E-05	0.4141	0.00025004	603.8023719629316	16.23	0.57193	16.315	16.081	16.653	0.085424					26	10	3	0	0	0	0.83158	1	5339	5339		9.3831	0.63772	1	14851000	+		22912	11266	14363	14449	22037	22037					-0.004256413660414182
NWDDDNVEDDF	11	Unmodified	_NWDDDNVEDDF_					0	0	0		ENST00000482389.1_1_7:96318238-96324219:-|nuORF;ENST00000506694.1_1_5:81188309-81188512:+|nuORF;ENSG00000127922|ENST00000248566|SEM1	ENST00000482389.1_1_7:96318238-96324219:-|nuORF	ENST00000482389.1_1_7:96318238-96324219:-|nuORF	MSMS	HCT116MG_D190212_S2	2	692.2520751953125	2	692.252211	1382.48987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.018	1	49.855	49.355	50.355	-0.16369								0	0	0	0.95954	1	19160	19160		1.3295	0	1				22913	2980	14364	14450	22038	22038					-0.18607671676659265
NWGPHCLS	8	Unmodified	_NWGPHCLS_					0	0	0			REV__ENST00000504032.1_1_4:39529872-39533625:+|nuORF	REV__ENST00000504032.1_1_4:39529872-39533625:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	457.20330810546875	2	457.202887	912.391221	0.11017	5.0371E-05	0.80174	0.00036656	0.91191	0.00041693	457.2031432532332	42.317	0.25879	42.248	42.12	42.379	-0.068199					11	4	3	0	0	0	0.78216	1	16020	16020		13.508	13.508	1	56288000	+		22914	16129	14365	14451	22039	22039					-0.06847856874071567
NWLISFAP	8	Unmodified	_NWLISFAP_					0	0	0			REV__ENST00000407775.6_1_8:106815204-106815279:+|nuORF	REV__ENST00000407775.6_1_8:106815204-106815279:+|nuORF	MSMS	HCT116MG_D190212_S4	4	474.2544860839844	2	474.252903	946.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.026	1	28.685	28.185	29.185	-0.34059								0	0	0	0.8837	1	10464	10464		10.183	0	1		+		22915	15427	14366	14452	22040	22040					0.015867037313796573
NWSGGGPP	8	Unmodified	_NWSGGGPP_					0	0	0			REV__ENST00000215781.2_2_22:30658982-30659216:-|nuORF	REV__ENST00000215781.2_2_22:30658982-30659216:-|nuORF	MSMS	HCT116MG_D190212_S1	1	386.5107727050781	2	386.174653	770.334752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.652	1	15.652	15.152	16.152	0								0	0	0	0.8837	1	5215	5215		2.8892	0	1		+		22916	14503	14367	14453	22041	22041					-0.0596016143909992
NWVLLPAGP	9	Unmodified	_NWVLLPAGP_					0	0	0		ENST00000438166.6_1_2:157292936-157352572:+|nuORF	ENST00000438166.6_1_2:157292936-157352572:+|nuORF	ENST00000438166.6_1_2:157292936-157352572:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	483.7738342285156	2	483.774003	965.533452	0.27969	0.00013531	-0.23084	-0.00011167	0.048846	2.363E-05	483.77372616405125	14.988	0.15621	14.988	14.91	15.066	0					6	2	3	0	0	0	0.55919	1	4971	4971		13.508	1.8676	1	5909300			22917	7894	14368	14454	22042	22042					0.04930679139749827
NYERQKMFL	9	Unmodified	_NYERQKMFL_					0	0	0		XPO5|p.V667M|1|0.27|ENSG00000124571|chr6:43548322-43548322|C/T|missense_variant	XPO5|p.V667M|1|0.27|ENSG00000124571|chr6:43548322-43548322|C/T|missense_variant	XPO5|p.V667M|1|0.27|ENSG00000124571|chr6:43548322-43548322|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	410.2105712890625	3	410.209619	1227.60703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.352	1	51.174	50.674	51.674	-0.17868								0	0	0	0.76877	1	19701	19701		5.7319	1.5423	1				22918	18701	14369	14455	22043	22043					0.00232859519928752
NYHRFFRLYCH	11	Unmodified	_NYHRFFRLYCH_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8;ENSG00000167615|ENST00000326764|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	MSMS	HCT116MG_D190212_S3	3	778.3854370117188	2	778.372412	1554.73027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.082	1	18.158	17.658	18.658	0.076334								0	0	0	0.95925	1	6118	6118		1.4819	0	1				22919	4937	14370	14456	22044	22044					-0.02490464308925766
NYKEGTYVY	9	Unmodified	_NYKEGTYVY_					0	0	0		nc|ENSG00000163646|P58418-1|CLRN1;ENSG00000163646|ENST00000327047|CLRN1;nc|ENSG00000163646|P58418-4|CLRN1	nc|ENSG00000163646|P58418-1|CLRN1	nc|ENSG00000163646|P58418-1|CLRN1	MULTI-MSMS	HCT116MG_D190212_S2	2	568.7666015625	2	568.766571	1135.51859	0.62057	0.00035296	-0.68948	-0.00039215	-0.068907	-3.9192E-05	568.7660618738346	29.719	0.30996	29.418	29.237	29.547	-0.30095					12	5	3	0	0	0	0.33687	1	10901	10901		26.884	1.4843	1	81079000			22920	4618	14371	14457	22045	22045					-0.04374857518882891
NYKEGTYVY	9	Unmodified	_NYKEGTYVY_					0	0	0		nc|ENSG00000163646|P58418-1|CLRN1;ENSG00000163646|ENST00000327047|CLRN1;nc|ENSG00000163646|P58418-4|CLRN1	nc|ENSG00000163646|P58418-1|CLRN1	nc|ENSG00000163646|P58418-1|CLRN1	MULTI-SECPEP	HCT116MG_D190212_S4	4	569.2568359375	2	568.766571	1135.51859	0.47787	0.0002718	-0.69422	-0.00039485	-0.21634	-0.00012305	568.766186433287	29.928	0.25996	29.571	29.441	29.701	-0.3571					7	4	2	0	0	0	0.23771	1	10820	10820		14.838	0	1	4719400			22921	4618	14371	14457	22046	22046					-0.04374857518882891
NYKEGTYVY	9	Unmodified	_NYKEGTYVY_					0	0	0		nc|ENSG00000163646|P58418-1|CLRN1;ENSG00000163646|ENST00000327047|CLRN1;nc|ENSG00000163646|P58418-4|CLRN1	nc|ENSG00000163646|P58418-1|CLRN1	nc|ENSG00000163646|P58418-1|CLRN1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	568.766571	1135.51859	0.60256	0.00034271	-1.078	-0.00061315	-0.47548	-0.00027044	568.766125919701	29.763	0.37078	29.526	29.292	29.662	-0.23655	0.073778	-0.00030638	NaN	26.884	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10632000			22922	4618	14371	14457							-0.04374857518882891
NYLTKEARE	9	Unmodified	_NYLTKEARE_					0	0	0			REV__ENST00000513973.5_1_6:83878483-83878678:-|nuORF	REV__ENST00000513973.5_1_6:83878483-83878678:-|nuORF	MSMS	HCT116MG_D190212_S2	2	375.1967468261719	3	375.196256	1122.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.252	1	15.918	15.418	16.418	-0.33451								0	0	0	0.76677	1	5457	5457		8.4443	4.8572	1		+		22923	16196	14372	14458	22047	22047					0.010556361209864917
NYNKMVFCPYY	11	Unmodified	_NYNKMVFCPYY_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MSMS	HCT116MG_D190212_S3	3	721.3190307617188	2	721.317591	1440.62063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.553	1	37.251	36.751	37.751	-0.30137								0	0	0	0.95023	1	13914	13914		6.2058	0.47393	1				22924	5410	14373	14459	22048	22048					-0.0820565076312505
NYNSLQILDP	10	Unmodified	_NYNSLQILDP_					0	0	0		ENST00000450405.1_1_2:207284139-207284406:-|nuORF	ENST00000450405.1_1_2:207284139-207284406:-|nuORF	ENST00000450405.1_1_2:207284139-207284406:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	588.6502685546875	2	588.798403	1175.58225	0.81761	0.00048141	-0.18679	-0.00010998	0.63082	0.00037143	588.7983761397559	44.75	0.41792	44.665	44.428	44.846	-0.084797					12	7	3	0	0	0	0.7974	1	16937	16937		12.241	0.60036	1	40323000			22925	7981	14374	14460	22049	22049					0.0014850291820494022
NYQILLKTRD	10	Unmodified	_NYQILLKTRD_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MSMS	HCT116MG_D190212_S4	4	632.35693359375	2	632.356419	1262.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.977	1	38.596	38.096	39.096	-0.38099								0	0	0	0.94925	1	14305	14305		4.897	0.95262	1				22926	2629	14375	14461	22050	22050					0.07744446488914036
NYVRYKLKK	9	Unmodified	_NYVRYKLKK_					0	0	0			REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	REV__tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	606.3692016601562	2	606.36659	1210.71863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.989	1	55.677	55.177	56.177	-0.312								0	0	0	0.76913	1	20980	20980		3.9444	0.94915	1		+		22927	17697	14376	14462	22051	22051					0.12169661939356047
NYYYELWWFW	10	Unmodified	_NYYYELWWFW_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;WBP1L|p.N258Afs*68|1|0.38|ENSG00000166272|chr10:102813061-102813062|-/GT|frameshift_variant;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MSMS	HCT116MG_D190212_S3	3	785.3428955078125	2	785.34552	1568.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.91	1	18.979	18.479	19.479	0.069159								0	0	0	0.96377	1	6452	6452		1.6526	0.32309	1				22928	4836	14377	14463	22052	22052					-0.0851035825969575
NYYYELWWFW	10	Unmodified	_NYYYELWWFW_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;WBP1L|p.N258Afs*68|1|0.38|ENSG00000166272|chr10:102813061-102813062|-/GT|frameshift_variant;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MSMS	HCT116MG_D190212_S4	4	785.3443603515625	2	785.34552	1568.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.054	1	18.867	18.367	19.367	-0.18674								0	0	0	0.96377	1	6437	6437		1.6526	0.58116	1				22929	4836	14377	14463	22053	22053					-0.0851035825969575
NYYYELWWFW	10	Unmodified	_NYYYELWWFW_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;WBP1L|p.N258Afs*68|1|0.38|ENSG00000166272|chr10:102813061-102813062|-/GT|frameshift_variant;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MSMS	HCT116MG_D190212_S4	4	785.34228515625	2	785.34552	1568.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.099	1	18.912	18.412	19.412	-0.18674								0	0	0	0.96377	1	6455	6455		1.6526	0.32309	1				22930	4836	14377	14463	22054	22054					-0.0851035825969575
PAAAARVHNP	10	Unmodified	_PAAAARVHNP_					0	0	0			REV__ENST00000380094.9_1_10:5931535-5931847:-|nuORF	REV__ENST00000380094.9_1_10:5931535-5931847:-|nuORF	MSMS	HCT116MG_D190212_S2	2	501.91796875	2	502.275232	1002.53591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.924	1	48.77	48.27	49.27	-0.15405								0	0	0	0.91906	1	18707	18707		11.64	0.81637	1		+		22931	15266	14378	14464	22055	22055					0.034745275974159995
PAAADLYEED	10	Unmodified	_PAAADLYEED_					0	0	0		nc|ENSG00000171798|Q76NI1-4|KNDC1;ENSG00000171798|ENST00000304613|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	MSMS	HCT116MG_D190212_S2	2	547.0570678710938	2	547.237844	1092.46113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.315	1	48.171	47.671	48.671	-0.1437								0	0	0	0.93576	1	18455	18455		7.9102	1.7044	1				22932	5212	14379	14465	22056	22056					-0.08139744515142411
PAAAEERSAGV	11	Unmodified	_PAAAEERSAGV_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S3	3	529.3213500976562	2	529.26727	1056.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.351	1	50.036	49.536	50.536	-0.31525								0	0	0	0.9414	1	18985	18985		10.824	1.4765	1				22933	8517	14380	14466	22057	22057					-0.006012234301579156
PAAAEPRPRR	10	Unmodified	_PAAAEPRPRR_					0	0	0		ENST00000544726.2_2_12:109592493-109592730:+|nuORF	ENST00000544726.2_2_12:109592493-109592730:+|nuORF	ENST00000544726.2_2_12:109592493-109592730:+|nuORF	MSMS	HCT116MG_D190212_S1	1	560.8203735351562	2	560.820338	1119.62612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.385	1	50.385	49.885	50.885	0								0	0	0	0.93854	1	19224	19224		7.2892	0.56607	1				22934	8712	14381	14467	22058	22058					0.07109576925836336
PAAAHGTRAR	10	Unmodified	_PAAAHGTRAR_					0	0	0		ENST00000471723.1_1_22:21356013-21356385:-|nuORF;ENST00000466670.1_1_22:21355515-21356385:-|nuORF;ENST00000399133.2_1_22:21355062-21356439:-|nuORF;ENST00000215742.8_1_22:21355062-21356370:-|nuORF;ENST00000476667.5_1_22:21355515-21356370:-|nuORF	ENST00000471723.1_1_22:21356013-21356385:-|nuORF	ENST00000471723.1_1_22:21356013-21356385:-|nuORF	MSMS	HCT116MG_D190212_S3	3	504.3764953613281	2	504.278306	1006.54206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.552	1	50.239	49.739	50.739	-0.31381								0	0	0	0.93576	1	19066	19066		7.9102	1.187	1				22935	6730	14382	14468	22059	22059					0.03905045828935272
PAAAMQFMLL	10	Unmodified	_PAAAMQFMLL_					0	0	0		nc|ENSG00000182287|P56377-2|AP1S2	nc|ENSG00000182287|P56377-2|AP1S2	nc|ENSG00000182287|P56377-2|AP1S2	MULTI-MSMS	HCT116MG_D190212_S3	3	546.7822265625	2	546.782656	1091.55076	0.35647	0.00019491	-1.7086	-0.00093423	-1.3521	-0.00073931	546.7813652311241	50.256	0.36549	49.94	49.81	50.176	-0.31525					9	6	2	0	0	0	0.84919	1	18979	18979		7.9102	0	1	4879400			22936	9573	14383	14469	22060	22060					0.008645153588986432
PAAAPAARTKP	11	Unmodified	_PAAAPAARTKP_					0	0	0		nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C;ENSG00000015133|ENST00000389857|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	nc|ENSG00000015133|Q9P219-3|CCDC88C	MSMS	HCT116MG_D190212_S4	4	525.8084716796875	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.046	1	50.691	50.191	51.191	-0.35483								0	0	0	0.93181	1	18986	18986		15.847	1.0089	1				22937	923	14384	14470	22061	22061					0.07536253945727367
PAAAPARRRI	10	Unmodified	_PAAAPARRRI_					0	0	0		nc|ENSG00000159714|Q8WTX9|ZDHHC1	nc|ENSG00000159714|Q8WTX9|ZDHHC1	nc|ENSG00000159714|Q8WTX9|ZDHHC1	MULTI-MSMS	HCT116MG_D190212_S2	2	539.832763671875	2	539.833249	1077.65194	0.50464	0.00027242	-1.3761	-0.00074287	-0.87147	-0.00047045	539.8324989454493	50.756	0.8854	50.584	50.087	50.973	-0.17191					25	16	2	0	0	0	0.72691	1	19444	19444		18.135	16.075	1	20597000			22938	9515	14385	14471	22062	22062					0.1162247116810704
PAAAPAWPLAG	11	Unmodified	_PAAAPAWPLAG_					0	0	0		ENST00000456291.1_3_9:123638279-123638699:-|nuORF	ENST00000456291.1_3_9:123638279-123638699:-|nuORF	ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MSMS	HCT116MG_D190212_S2	2	511.265869140625	2	511.276909	1020.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.266	1	50.094	49.594	50.594	-0.1719								0	0	0	0.93181	1	19262	19262		15.847	3.3156	1				22939	8026	14386	14472	22063	22063					0.029817776514164507
PAAAPGRP	8	Unmodified	_PAAAPGRP_					0	0	0			REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	368.7085876464844	2	368.708663	735.402772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.648	1	19.708	19.208	20.208	0.05983								0	0	0	0.8217	1	6750	6750		20.871	0	1		+		22940	17016	14387	14473	22064	22064					0.024487082115570047
PAAAPGRP	8	Unmodified	_PAAAPGRP_					0	0	0			REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	368.7083740234375	2	368.708663	735.402772	-0.00094298	-3.4769E-07	-0.054852	-2.0224E-05	-0.055795	-2.0572E-05	368.7085485758131	19.852	0.30216	19.658	19.434	19.736	-0.19367					7	5	2	0	0	0	0.64761	1	6768	6768		28.173	0	1	2960100	+		22941	17016	14387	14473	22065	22065					0.024487082115570047
PAAAPIKTRTR	11	Unmodified	_PAAAPIKTRTR_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S2	2	591.3583374023438	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.14	1	48.007	47.507	48.507	-0.13281								0	0	0	0.9414	1	18383	18383		10.824	4.1008	1				22942	5541	14388	14474	22066	22066					0.12091589791225488
PAAAPIKTRTR	11	Unmodified	_PAAAPIKTRTR_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S2	2	591.3587036132812	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.26	1	48.116	47.616	48.616	-0.1437								0	0	0	0.9414	1	18432	18432		10.824	4.1008	1				22943	5541	14388	14474	22067	22067					0.12091589791225488
PAAAPIKTRTR	11	Unmodified	_PAAAPIKTRTR_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S3	3	591.2008666992188	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.242	1	49.927	49.427	50.427	-0.31525								0	0	0	0.9414	1	18941	18941		10.824	0	1				22944	5541	14388	14474	22068	22068					0.12091589791225488
PAAAPIKTRTR	11	Unmodified	_PAAAPIKTRTR_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S3	3	591.6829833984375	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.442	1	50.128	49.628	50.628	-0.31444								0	0	0	0.9414	1	19021	19021		10.824	2.0785	1				22945	5541	14388	14474	22069	22069					0.12091589791225488
PAAAPIKTRTR	11	Unmodified	_PAAAPIKTRTR_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S3	3	591.5817260742188	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.506	1	50.192	49.692	50.692	-0.31381								0	0	0	0.9414	1	19047	19047		10.824	4.1008	1				22946	5541	14388	14474	22070	22070					0.12091589791225488
PAAAPIKTRTR	11	Unmodified	_PAAAPIKTRTR_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S3	3	591.3575439453125	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.764	1	50.45	49.95	50.95	-0.31381								0	0	0	0.93552	1	19151	19151		13.906	6.2971	1				22947	5541	14388	14474	22071	22071					0.12091589791225488
PAAAPIKTRTR	11	Unmodified	_PAAAPIKTRTR_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S3	3	591.3590087890625	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.389	1	51.077	50.577	51.577	-0.31166								0	0	0	0.9414	1	19402	19402		10.824	4.1008	1				22948	5541	14388	14474	22072	22072					0.12091589791225488
PAAAPIKTRTR	11	Unmodified	_PAAAPIKTRTR_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S4	4	591.3591918945312	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.558	1	51.207	50.707	51.707	-0.35028								0	0	0	0.9414	1	19192	19192		10.824	4.1008	1				22949	5541	14388	14474	22073	22073					0.12091589791225488
PAAAPIKTRTR	11	Unmodified	_PAAAPIKTRTR_					0	0	0		nc|ENSG00000179168|Q86UU5-2|GGN;GGN|p.A569Pfs*47|1|0.5|ENSG00000179168|chr19:38385557-38385557|C/-|frameshift_variant;ENSG00000179168|ENST00000334928|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S4	4	591.3593139648438	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.454	1	52.114	51.614	52.614	-0.34023								0	0	0	0.94924	1	19555	19555		6.7232	0	1				22950	5541	14388	14474	22074	22074					0.12091589791225488
PAAAPPPPPPP	11	Unmodified	_PAAAPPPPPPP_					0	0	0		ENSG00000205922|ENST00000382349|ONECUT3	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000205922|ENST00000382349|ONECUT3	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MSMS	HCT116MG_D190212_S3	3	504.8098449707031	2	504.779285	1007.54402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.063	1	49.748	49.248	50.248	-0.31525								0	0	0	0.93181	1	18868	18868		15.847	0	1				22951	11840;6391	14389	14475	22075	22075					0.04054661794179992
PAAAPPQPHLD	11	Unmodified	_PAAAPPQPHLD_					0	0	0			REV__ENST00000608290.1_1_22:46410754-46410880:+|nuORF	REV__ENST00000608290.1_1_22:46410754-46410880:+|nuORF	MSMS	HCT116MG_D190212_S3	3	557.33203125	2	557.288005	1112.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.044	1	49.729	49.229	50.229	-0.31525								0	0	0	0.9414	1	18861	18861		10.824	1.4765	1		+		22952	16784	14390	14476	22076	22076					0.009679573291805355
PAAAPPVRNPC	11	Unmodified	_PAAAPPVRNPC_					0	0	0			REV__chr9:128152284-128153311|120|20.91|0.34|5.95|+|1|LCN2,LCN2|2	REV__chr9:128152284-128153311|120|20.91|0.34|5.95|+|1|LCN2,LCN2|2	MSMS	HCT116MG_D190212_S2	2	546.7833862304688	2	546.784576	1091.5546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.101	1	49.937	49.437	50.437	-0.16369								0	0	0	0.93181	1	19194	19194		15.847	3.3156	1		+		22953	10190	14391	14477	22077	22077					0.012483211769676927
PAAAPRGWSEF	11	Unmodified	_PAAAPRGWSEF_					0	0	0		SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant;ENSG00000111252|ENST00000341259|SH2B3;SH2B3|p.L347Cfs*26|1|0.23|ENSG00000111252|chr12:111447341-111447341|G/-|frameshift_variant	SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant	SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	594.694091796875	2	594.793455	1187.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.394	1	50.079	49.579	50.579	-0.31525								0	0	0	0.9414	1	19002	19002		10.824	0.75	1				22954	2280	14392	14478	22078	22078					-0.01392640296535319
PAAAPTAMPQV	11	Unmodified	_PAAAPTAMPQV_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MSMS	HCT116MG_D190212_S2	2	527.1222534179688	2	527.273509	1052.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.534	1	48.391	47.891	48.891	-0.1437								0	0	0	0.89642	1	18546	18546		20.454	3.5113	1		+		22955	17260	14393	14479	22079	22079					0.008300967085460798
PAAAPYSTQKS	11	Unmodified	_PAAAPYSTQKS_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000491720.5_1_2:182783318-182792989:+|nuORF;ENST00000440623.5_1_2:182781645-182792989:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MSMS	HCT116MG_D190212_S4	4	560.7850952148438	2	560.785296	1119.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.435	1	51.084	50.584	51.584	-0.35028								0	0	0	0.9414	1	19142	19142		10.824	3.5347	1				22956	3559	14394	14480	22080	22080					0.0010423374669699115
PAAARARNGAT	11	Unmodified	_PAAARARNGAT_					0	0	0		ENSG00000187017|ENST00000645284|ESPN;ESPN|p.P431Hfs*32|1|0.28|ENSG00000187017|chr1:6445759-6445759|C/-|frameshift_variant	ENSG00000187017|ENST00000645284|ESPN	ENSG00000187017|ENST00000645284|ESPN	MSMS	HCT116MG_D190212_S2	2	528.2909545898438	2	528.288871	1054.56319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.939	1	14.619	14.119	15.119	-0.31952								0	0	0	0.93552	1	4928	4928		13.906	3.0821	1				22957	5925	14395	14481	22081	22081					0.03809011137809648
PAAARKGRLR	10	Unmodified	_PAAARKGRLR_					0	0	0			REV__ENST00000530167.1_1_11:118965174-118965585:-|nuORF	REV__ENST00000530167.1_1_11:118965174-118965585:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	547.7661743164062	2	548.346523	1094.67849	0.40102	0.0002199	-0.23134	-0.00012685	0.16968	9.3045E-05	548.847950960953	51.261	0.52383	50.949	50.596	51.12	-0.31166					15	9	3	0	0	0	0.30961	1	19316	19316		7.9102	7.9102	1	2735100	+		22958	16305	14396	14482	22082	22082					0.1349416005944022
PAAARQQRKK	10	Unmodified	_PAAARQQRKK_					0	0	0		ENST00000367434.4_1_1:193155339-193155666:-|nuORF	ENST00000367434.4_1_1:193155339-193155666:-|nuORF	ENST00000367434.4_1_1:193155339-193155666:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	577.8018188476562	2	577.349263	1152.68397	0.45088	0.00026032	-1.0205	-0.00058918	-0.5696	-0.00032886	577.3485032933278	50.48	0.72854	50.308	49.985	50.713	-0.1719					18	13	2	0	0	0	0.85662	1	19302	19302		7.2892	0.56607	1	9756100			22959	7387	14397	14483	22083	22083					0.11373838851272922
PAAAVVRPAPL	11	Unmodified	_PAAAVVRPAPL_					0	0	0			REV__ENST00000215829.7_1_22:24951748-24951973:+|nuORF	REV__ENST00000215829.7_1_22:24951748-24951973:+|nuORF	MSMS	HCT116MG_D190212_S4	4	531.30517578125	2	531.326934	1060.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.782	1	50.427	49.927	50.927	-0.35483								0	0	0	0.9414	1	18879	18879		10.824	2.9138	1		+		22960	14504	14398	14484	22084	22084					0.1114201498521652
PAADKIGTITL	11	Unmodified	_PAADKIGTITL_					0	0	0		ENST00000593133.5_1_19:38085335-38085641:-|nuORF	ENST00000593133.5_1_19:38085335-38085641:-|nuORF	ENST00000593133.5_1_19:38085335-38085641:-|nuORF	MSMS	HCT116MG_D190212_S3	3	550.2179565429688	2	550.321514	1098.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.572	1	14.652	14.152	15.152	0.079683								0	0	0	0.94416	1	4701	4701		9.3831	2.66	1				22961	9045	14399	14485	22085	22085					0.08310567820285542
PAADRGDDEDM	11	Unmodified	_PAADRGDDEDM_					0	0	0			REV__nc|ENSG00000103126|O15169-2|AXIN1	REV__nc|ENSG00000103126|O15169-2|AXIN1	MSMS	HCT116MG_D190212_S4	4	596.2337036132812	2	596.232767	1190.45098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.084	1	50.729	50.229	51.229	-0.35483								0	0	0	0.95521	1	19001	19001		3.5965	0.31518	1		+		22962	11176	14400	14486	22086	22086					-0.1366267551202327
PAAEDTQGWH	10	Unmodified	_PAAEDTQGWH_					0	0	0			REV__ENST00000568636.5_1_16:718678-720341:+|nuORF	REV__ENST00000568636.5_1_16:718678-720341:+|nuORF	MSMS	HCT116MG_D190212_S1	1	556.2427368164062	2	556.243795	1110.47304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.682	1	21.682	21.182	22.182	0								0	0	0	0.93854	1	7639	7639		7.2892	0.56607	1		+		22963	16559	14401	14487	22087	22087					-0.07778082981280932
PAAEGQPAG	9	Unmodified	_PAAEGQPAG_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	797.37890625	1	797.378808	796.371532	0.59031	0.0004707	0.21795	0.00017379	0.80826	0.00064449	797.378859523519	16.958	1.1445	17.042	16.444	17.589	0.084467					39	21	3	0	0	0	0.065014	1	5516	5516		67.344	5.9864	1	12066000	+		22964	11802	14402	14488	22088	22088					-0.03479909613190557
PAAEPLPLFP	10	Unmodified	_PAAEPLPLFP_					0	0	0			REV__ENSG00000272674|ENST00000609684|PCDHB16	REV__ENSG00000272674|ENST00000609684|PCDHB16	MSMS	HCT116MG_D190212_S2	2	351.2000427246094	3	351.198937	1050.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.951	1	20.568	20.068	21.068	-0.38288								0	0	0	0.95179	1	7348	7348		2.086	0	1		+		22965	14444	14403	14489	22089	22089					0.051718151084287456
PAAFWFRGRRG	11	Unmodified	_PAAFWFRGRRG_					0	0	0			REV__ENST00000225873.8_2_17:33905316-33905562:-|nuORF	REV__ENST00000225873.8_2_17:33905316-33905562:-|nuORF	MSMS	HCT116MG_D190212_S4	4	660.8572998046875	2	660.857255	1319.69996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.311	1	49.952	49.452	50.452	-0.35878								0	0	0	0.95521	1	18688	18688		3.5965	0	1		+		22966	14534	14404	14490	22090	22090					0.052895450881578654
PAAGAPVA	8	Unmodified	_PAAGAPVA_					0	0	0		ENSG00000187533|ENST00000344526|PRR27	ENSG00000187533|ENST00000344526|PRR27	ENSG00000187533|ENST00000344526|PRR27	MULTI-SECPEP	HCT116MG_D190212_S1	1	652.7896118164062	1	653.361702	652.354425	0.6252	0.00040848	0.21501	0.00014048	0.84021	0.00054896	653.3616876075724	18.751	0.2606	18.751	18.61	18.871	0					6	4	2	0	0	0	0.2601	1	6511	6511		32.454	0	1	4241300			22967	5941	14405	14491	22091	22091					0.014342145716682353
PAAGEGAATAA	11	Unmodified	_PAAGEGAATAA_					0	0	0		ENST00000536690.1_1_11:64064895-64067293:+|nuORF	ENST00000536690.1_1_11:64064895-64067293:+|nuORF	ENST00000536690.1_1_11:64064895-64067293:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	443.7170104980469	2	443.716882	885.41921	0.10156	4.5064E-05	0.10528	4.6715E-05	0.20684	9.1779E-05	443.716791628141	18.936	0.52016	19.005	18.719	19.239	0.069159					15	9	2	0	0	0	0.35892	1	6450	6450		58.679	9.1516	1	6323600			22968	8666	14406	14492	22092	22092					-0.02808255413015104
PAAGEGAATAA	11	Unmodified	_PAAGEGAATAA_					0	0	0		ENST00000536690.1_1_11:64064895-64067293:+|nuORF	ENST00000536690.1_1_11:64064895-64067293:+|nuORF	ENST00000536690.1_1_11:64064895-64067293:+|nuORF	MSMS	HCT116MG_D190212_S4	4	443.7165832519531	2	443.716882	885.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.148	1	18.962	18.462	19.462	-0.18674								0	0	0	0.75821	1	6475	6475		36.127	0	1				22969	8666	14406	14492	22093	22093					-0.02808255413015104
PAAGHPVP	8	Unmodified	_PAAGHPVP_					0	0	0			REV__ENST00000559622.5_2_15:59397358-59406659:+|nuORF	REV__ENST00000559622.5_2_15:59397358-59406659:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	745.399169921875	1	745.39915	744.391873	1.0043	0.00074859	-1.3777	-0.0010269	-0.37338	-0.00027831	745.3979783224352	50.844	0.25792	50.668	50.502	50.76	-0.17673					8	4	2	0	0	0	0.8029	1	19506	19506		11.114	0	1	14969000	+		22970	14739	14407	14493	22094	22094					0.009453058372741907
PAAGPRWAER	10	Unmodified	_PAAGPRWAER_					0	0	0			REV__ENST00000264832.7_1_19:10381526-10381682:+|nuORF	REV__ENST00000264832.7_1_19:10381526-10381682:+|nuORF	MSMS	HCT116MG_D190212_S2	2	555.7958984375	2	555.793789	1109.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.575	1	15.249	14.749	15.749	-0.32684								0	0	0	0.93576	1	5185	5185		7.9102	1.7044	1		+		22971	14669	14408	14494	22095	22095					0.02262199143183352
PAAGRSRRRP	10	Unmodified	_PAAGRSRRRP_					0	0	0			REV__ENST00000242057.8_1_7:17338382-17338508:+|nuORF	REV__ENST00000242057.8_1_7:17338382-17338508:+|nuORF	MSMS	HCT116MG_D190212_S2	2	562.3312377929688	2	562.331405	1122.64826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.278	1	41.21	40.71	41.71	-0.068199								0	0	0	0.91507	1	15592	15592		12.532	1.7076	1		+		22972	14562	14409	14495	22096	22096					0.09183801394260627
PAAGRTENWIF	11	Unmodified	_PAAGRTENWIF_					0	0	0		chr13:100583997-100588741|393|15.24|0.0|20.54|-|1|GGACT,GGACT|1	chr13:100583997-100588741|393|15.24|0.0|20.54|-|1|GGACT,GGACT|1	chr13:100583997-100588741|393|15.24|0.0|20.54|-|1|GGACT,GGACT|1	MULTI-MSMS	HCT116MG_D190212_S3	3	631.318359375	2	631.319837	1260.62512	0.47106	0.00029739	-2.4108	-0.001522	-1.9397	-0.0012246	631.3177044051258	21.781	0.52508	21.791	21.473	21.999	0.0093956					19	9	3	0	0	0	0.70991	1	7621	7621		18.146	1.0335	1	7927800			22973	448	14410	14496	22097	22097					0.0052331776628307125
PAAGWRRRRL	10	Unmodified	_PAAGWRRRRL_					0	0	0		GREM2|p.I149Nfs*66|1|0.11|ENSG00000180875|chr1:240493030-240493031|-/T|frameshift_variant	GREM2|p.I149Nfs*66|1|0.11|ENSG00000180875|chr1:240493030-240493031|-/T|frameshift_variant	GREM2|p.I149Nfs*66|1|0.11|ENSG00000180875|chr1:240493030-240493031|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	619.8690185546875	2	619.870697	1237.72684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.496	1	49.337	48.837	49.837	-0.15935								0	0	0	0.91906	1	18945	18945		11.64	0.81637	1				22974	9196	14411	14497	22098	22098					0.11748653699351053
PAAHQSQPQ	9	Unmodified	_PAAHQSQPQ_					0	0	0			REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	HCT116MG_D190212_S3	3	482.23541259765625	2	482.235773	962.456993	0.15655	7.5493E-05	0.082789	3.9924E-05	0.23934	0.00011542	482.2357730595979	20.029	1.3539	20.077	19.166	20.52	0.048107					37	25	2	0	0	0	0.23138	1	6890	6890		37.974	5.6685	1	6227500	+		22975	10016	14412	14498	22099	22099					-0.025737444275137022
PAAHQSQPQ	9	Unmodified	_PAAHQSQPQ_					0	0	0			REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MSMS	HCT116MG_D190212_S4	4	482.2364501953125	2	482.235773	962.456993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.758	1	19.564	19.064	20.064	-0.19367								0	0	0	0.46109	1	6721	6721		30.637	1.555	1		+		22976	10016	14412	14498	22100	22100					-0.025737444275137022
PAAKIRRV	8	Unmodified	_PAAKIRRV_					0	0	0			REV__ENST00000374012.7_1_20:34359909-34389461:+|nuORF	REV__ENST00000374012.7_1_20:34359909-34389461:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	910.594970703125	1	910.594496	909.587219	0.73151	0.00066611	0.06298	5.7349E-05	0.79449	0.00072346	910.5943841672598	61.011	0.72119	61.011	60.799	61.521	0					31	13	3	0	0	0	0.87576	1	23513	23513		0.79363	0.10326	1	62925000	+		22977	15199	14413	14499	22101	22101					0.1288089636212817
PAAKKAKTVK	10	Unmodified	_PAAKKAKTVK_					0	0	0			REV__ENSG00000124575|ENST00000244534|H1-3	REV__ENSG00000124575|ENST00000244534|H1-3	MSMS	HCT116MG_D190212_S2	2	521.3401489257812	2	521.342584	1040.67061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.83	1	48.686	48.186	49.186	-0.1437								0	0	0	0.92607	1	18668	18668		10.074	2.1638	1		+		22978	11792	14414	14500	22102	22102					0.15190588019322604
PAAKKHALF	9	Unmodified	_PAAKKHALF_					0	0	0			REV__CON__Q3SZ57	REV__CON__Q3SZ57	MSMS	HCT116MG_D190212_S1	1	491.7962341308594	2	491.795269	981.575986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.295	1	49.295	48.795	49.795	0								0	0	0	0.76781	1	18780	18780		8.5933	3.3626	1		+	+	22979	10270	14415	14501	22103	22103					0.08446074267988024
PAAKKPKATK	10	Unmodified	_PAAKKPKATK_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1	REV__ENSG00000124610|ENST00000244573|H1-1	MSMS	HCT116MG_D190212_S2	2	520.3327026367188	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.071	1	49.908	49.408	50.408	-0.16369								0	0	0	0.92607	1	19182	19182		10.074	0	1		+		22980	11793	14416	14502	22104	22104					0.13718301502262875
PAAKKPKATK	10	Unmodified	_PAAKKPKATK_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1	REV__ENSG00000124610|ENST00000244573|H1-1	MSMS	HCT116MG_D190212_S2	2	520.3333740234375	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.123	1	50.945	50.445	51.445	-0.17868								0	0	0	0.92607	1	19607	19607		10.074	0	1		+		22981	11793	14416	14502	22105	22105					0.13718301502262875
PAAKKPKATK	10	Unmodified	_PAAKKPKATK_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1	REV__ENSG00000124610|ENST00000244573|H1-1	MSMS	HCT116MG_D190212_S2	2	520.3333740234375	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.254	1	53.065	52.565	53.565	-0.18922								0	0	0	0.94107	1	20475	20475		6.7232	0.51738	1		+		22982	11793	14416	14502	22106	22106					0.13718301502262875
PAAKKPKATK	10	Unmodified	_PAAKKPKATK_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1	REV__ENSG00000124610|ENST00000244573|H1-1	MSMS	HCT116MG_D190212_S3	3	520.3329467773438	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.426	1	49.11	48.61	49.61	-0.31596								0	0	0	0.94107	1	18612	18612		6.7232	2.3939	1		+		22983	11793	14416	14502	22107	22107					0.13718301502262875
PAAKKPKATK	10	Unmodified	_PAAKKPKATK_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1	REV__ENSG00000124610|ENST00000244573|H1-1	MSMS	HCT116MG_D190212_S3	3	520.3330078125	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.996	1	49.681	49.181	50.181	-0.31525								0	0	0	0.92607	1	18842	18842		10.074	0	1		+		22984	11793	14416	14502	22108	22108					0.13718301502262875
PAAKKVAVKVL	11	Unmodified	_PAAKKVAVKVL_					0	0	0		ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	MSMS	HCT116MG_D190212_S3	3	562.38037109375	2	562.381709	1122.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.908	1	50.594	50.094	51.094	-0.31381								0	0	0	0.94416	1	19209	19209		9.3831	5.4387	1				22985	2217	14417	14503	22109	22109					0.1924002060454768
PAAKKVAVKVL	11	Unmodified	_PAAKKVAVKVL_					0	0	0		ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	MSMS	HCT116MG_D190212_S3	3	562.3798828125	2	562.381709	1122.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.468	1	51.156	50.656	51.656	-0.31166								0	0	0	0.95023	1	19433	19433		6.2058	2.9245	1				22986	2217	14417	14503	22110	22110					0.1924002060454768
PAAKKVAVKVL	11	Unmodified	_PAAKKVAVKVL_					0	0	0		ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	MSMS	HCT116MG_D190212_S3	3	562.100341796875	2	562.381709	1122.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.181	1	51.872	51.372	52.372	-0.30927								0	0	0	0.95023	1	19720	19720		6.2058	0	1				22987	2217	14417	14503	22111	22111					0.1924002060454768
PAAKLKRAP	9	Unmodified	_PAAKLKRAP_					0	0	0			REV__nc|ENSG00000154928|P54762-6|EPHB1	REV__nc|ENSG00000154928|P54762-6|EPHB1	MSMS	HCT116MG_D190212_S3	3	476.30621337890625	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.896	1	49.581	49.081	50.081	-0.31525								0	0	0	0.76781	1	18801	18801		8.5933	3.3626	1		+		22988	17168	14418	14504	22112	22112					0.12525763159317194
PAAKLKRAP	9	Unmodified	_PAAKLKRAP_					0	0	0			REV__nc|ENSG00000154928|P54762-6|EPHB1	REV__nc|ENSG00000154928|P54762-6|EPHB1	MSMS	HCT116MG_D190212_S3	3	476.31817626953125	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.089	1	49.773	49.273	50.273	-0.31525								0	0	0	0.76781	1	18879	18879		8.5933	3.3626	1		+		22989	17168	14418	14504	22113	22113					0.12525763159317194
PAAKLKRAP	9	Unmodified	_PAAKLKRAP_					0	0	0			REV__nc|ENSG00000154928|P54762-6|EPHB1	REV__nc|ENSG00000154928|P54762-6|EPHB1	MSMS	HCT116MG_D190212_S3	3	476.3068542480469	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.478	1	50.164	49.664	50.664	-0.31381								0	0	0	0.76781	1	19035	19035		8.5933	0	1		+		22990	17168	14418	14504	22114	22114					0.12525763159317194
PAAKLKRAP	9	Unmodified	_PAAKLKRAP_					0	0	0			REV__nc|ENSG00000154928|P54762-6|EPHB1	REV__nc|ENSG00000154928|P54762-6|EPHB1	MSMS	HCT116MG_D190212_S3	3	476.3066101074219	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.051	1	50.738	50.238	51.238	-0.31329								0	0	0	0.7696	1	19266	19266		2.3027	0	1		+		22991	17168	14418	14504	22115	22115					0.12525763159317194
PAAKRRRKI	9	Unmodified	_PAAKRRRKI_					0	0	0			REV__ENSG00000092978|ENST00000366935|GPATCH2	REV__ENSG00000092978|ENST00000366935|GPATCH2	MSMS	HCT116MG_D190212_S2	2	548.583740234375	2	548.364716	1094.71488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.146	1	48.992	48.492	49.492	-0.15405								0	0	0	0.76781	1	18800	18800		8.5933	1.4916	1		+		22992	11019	14419	14505	22116	22116					0.17131036956175194
PAAKRVKLDSV	11	Unmodified	_PAAKRVKLDSV_					0	0	0		MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant	MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	591.9852294921875	2	592.361505	1182.70846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.27	1	49.912	49.412	50.412	-0.35878								0	0	0	0.94284	1	18672	18672		10.074	0	1				22993	3455	14420	14506	22117	22117					0.12441054214127689
PAAKSLLTMQE	11	Unmodified	_PAAKSLLTMQE_					0	0	0		LIG3|p.I374M|1|0.19|ENSG00000005156|chr17:34991751-34991751|C/G|missense_variant	LIG3|p.I374M|1|0.19|ENSG00000005156|chr17:34991751-34991751|C/G|missense_variant	LIG3|p.I374M|1|0.19|ENSG00000005156|chr17:34991751-34991751|C/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	594.8164672851562	2	594.818281	1187.62201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.366	1	52.06	51.56	52.56	-0.30664								0	0	0	0.94538	1	19795	19795		8.7454	1.4562	1				22994	9297	14421	14507	22118	22118					0.03570306597248418
PAAKTQTYRP	10	Unmodified	_PAAKTQTYRP_					0	0	0		SORBS2|p.A565Gfs*10|1|0.32|ENSG00000154556|chr4:185623723-185623724|-/C|frameshift_variant;ENSG00000154556|ENST00000695409|SORBS2;nc|ENSG00000154556|O94875-5|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2;SORBS2|p.A565Lfs*49|1|0.16|ENSG00000154556|chr4:185623725-185623725|G/-|frameshift_variant;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;ENST00000470685.5_1_4:186567806-186696403:-|nuORF;ENST00000490779.5_1_4:186567204-186578685:-|nuORF;ENST00000492810.5_1_4:186567204-186577840:-|nuORF;ENST00000466289.5_1_4:186567806-186577840:-|nuORF;nc|ENSG00000154556|O94875-6|SORBS2;ENST00000495932.5_1_4:186548155-186577792:-|nuORF;nc|ENSG00000154556|O94875-9|SORBS2;nc|ENSG00000154556|O94875-7|SORBS2;ENST00000476311.5_1_4:186567204-186577840:-|nuORF;ENST00000485380.5_1_4:186567806-186577792:-|nuORF	SORBS2|p.A565Gfs*10|1|0.32|ENSG00000154556|chr4:185623723-185623724|-/C|frameshift_variant	SORBS2|p.A565Gfs*10|1|0.32|ENSG00000154556|chr4:185623723-185623724|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	567.0846557617188	2	566.809105	1131.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.122	1	50.81	50.31	51.31	-0.31166								0	0	0	0.93854	1	19295	19295		7.2892	0.56607	1				22995	18184	14422	14508	22119	22119					0.04311932737573443
PAALEMELLP	10	Unmodified	_PAALEMELLP_					0	0	0		ENST00000426755.5_1_3:196366735-196443731:+|nuORF;ENST00000461791.1_1_3:196366729-196381530:+|nuORF	ENST00000426755.5_1_3:196366735-196443731:+|nuORF	ENST00000426755.5_1_3:196366735-196443731:+|nuORF	MSMS	HCT116MG_D190212_S4	4	542.2903442382812	2	542.291368	1082.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.683	1	50.328	49.828	50.828	-0.35483								0	0	0	0.95179	1	18839	18839		4.3292	0	1				22996	7819	14423	14509	22120	22120					0.030201341655583747
PAALGGRRA	9	Unmodified	_PAALGGRRA_					0	0	0		ENST00000564834.1_1_7:152161668-152162124:+|nuORF	ENST00000564834.1_1_7:152161668-152162124:+|nuORF	ENST00000564834.1_1_7:152161668-152162124:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	434.7587890625	2	434.759218	867.503883	0.018294	7.9533E-06	-0.30545	-0.0001328	-0.28715	-0.00012484	434.758962218315	45.798	0.51282	45.697	45.556	46.068	-0.10139					12	9	2	0	0	0	0.65706	1	17448	17448		7.9102	7.9102	1	26313000			22997	8852	14424	14510	22121	22121					0.06483159914273529
PAALGGRRA	9	Unmodified	_PAALGGRRA_					0	0	0		ENST00000564834.1_1_7:152161668-152162124:+|nuORF	ENST00000564834.1_1_7:152161668-152162124:+|nuORF	ENST00000564834.1_1_7:152161668-152162124:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	434.759218	867.503883	0.064569	2.8072E-05	0.075627	3.2879E-05	0.1402	6.0952E-05	434.7591485916562	45.374	0.62648	45.374	45.244	45.87	0	-0.28581	0.0001572	NaN	7.9102	26	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80932000			22998	8852	14424	14510							0.06483159914273529
PAALKAEKEAK	11	Unmodified	_PAALKAEKEAK_					0	0	0			REV__nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	REV__nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	MSMS	HCT116MG_D190212_S3	3	578.6688842773438	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.033	1	36.732	36.232	37.232	-0.30113								0	0	0	0.94145	1	13704	13704		10.8	2.0541	1		+		22999	17327	14425	14511	22122	22122					0.09477659085882806
PAALLAVHR	9	Unmodified	_PAALLAVHR_					0	0	0			REV__ENST00000339157.9_1_20:25281118-25281484:-|nuORF	REV__ENST00000339157.9_1_20:25281118-25281484:-|nuORF	MSMS	HCT116MG_D190212_S3	3	474.29083251953125	2	474.292894	946.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.286	1	51.977	51.477	52.477	-0.30927								0	0	0	0.7676	1	19762	19762		9.3474	3.587	1		+		23000	14961	14426	14512	22123	22123					0.09581190125220473
PAALNEMEEHT	11	Unmodified	_PAALNEMEEHT_					0	0	0			REV__nc|ENSG00000139220|O75334-6|PPFIA2	REV__nc|ENSG00000139220|O75334-6|PPFIA2	MSMS	HCT116MG_D190212_S1	1	621.1431884765625	2	621.276977	1240.5394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.557	1	15.557	15.057	16.057	0								0	0	0	0.95521	1	5177	5177		3.5965	0	1		+		23001	12254	14427	14513	22124	22124					-0.07124635201557794
PAALRPLQGP	10	Unmodified	_PAALRPLQGP_					0	0	0		ZNF541|p.T630Pfs*22|1|0.28|ENSG00000118156|chr19:47544641-47544641|T/-|frameshift_variant;ZNF541|p.P998Qfs*46|1|0.22|ENSG00000118156|chr19:47538243-47538243|G/-|frameshift_variant;nc|ENSG00000118156|Q9H0D2-2|ZNF541;ZNF541|p.G1117Afs*52|1|0.13|ENSG00000118156|chr19:47531697-47531697|C/-|frameshift_variant;ENSG00000118156|ENST00000391901|ZNF541	ZNF541|p.T630Pfs*22|1|0.28|ENSG00000118156|chr19:47544641-47544641|T/-|frameshift_variant	ZNF541|p.T630Pfs*22|1|0.28|ENSG00000118156|chr19:47544641-47544641|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	510.30206298828125	2	510.303458	1018.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.145	1	19.947	19.447	20.447	-0.1986								0	0	0	0.90023	1	6878	6878		15.847	1.0089	1				23002	2598	14428	14514	22125	22125					0.08381155434096854
PAALRRDRSIP	11	Unmodified	_PAALRRDRSIP_					0	0	0			REV__ENST00000574733.5_1_16:4519403-4524387:-|nuORF	REV__ENST00000574733.5_1_16:4519403-4524387:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	626.36669921875	2	626.367653	1250.72075	0.59853	0.0003749	-0.87163	-0.00054596	-0.2731	-0.00017106	626.3667837230021	49.621	1.5489	49.621	48.819	50.368	0					42	29	2	0	0	0	0.74191	1	19199	19199		3.5965	0.31518	1	31774000	+		23003	16591	14429	14515	22126	22126					0.1054209067717693
PAALRRPRPD	10	Unmodified	_PAALRRPRPD_					0	0	0		ENST00000606441.1_1_6:3068607-3069069:-|nuORF	ENST00000606441.1_1_6:3068607-3069069:-|nuORF	ENST00000606441.1_1_6:3068607-3069069:-|nuORF	MSMS	HCT116MG_D190212_S3	3	574.3495483398438	2	574.835988	1147.65742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.177	1	51.867	51.367	52.367	-0.30927								0	0	0	0.93854	1	19718	19718		7.2892	1.0834	1				23004	9112	14430	14516	22127	22127					0.08950149959923692
PAALVCRIQKL	11	Unmodified	_PAALVCRIQKL_					0	0	0		nc|ENSG00000166451|Q96H22-3|CENPN	nc|ENSG00000166451|Q96H22-3|CENPN	nc|ENSG00000166451|Q96H22-3|CENPN	MSMS	HCT116MG_D190212_S4	4	606.3697509765625	2	606.368275	1210.722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.72	1	54.396	53.896	54.896	-0.32349								0	0	0	0.95581	1	20468	20468		3.2813	1.2216	1				23005	9535	14431	14517	22128	22128					0.12506588721726075
PAANHRSGTWD	11	Unmodified	_PAANHRSGTWD_					0	0	0		RBM24|p.G191Wfs*55|1|0.48|ENSG00000112183|chr6:17291977-17291978|-/T|frameshift_variant	RBM24|p.G191Wfs*55|1|0.48|ENSG00000112183|chr6:17291977-17291978|-/T|frameshift_variant	RBM24|p.G191Wfs*55|1|0.48|ENSG00000112183|chr6:17291977-17291978|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	605.9486083984375	2	606.281243	1210.54793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.893	1	15.729	15.229	16.229	-0.16364								0	0	0	0.95113	1	5160	5160		5.7319	1.4026	1				23006	9808	14432	14518	22129	22129					-0.04891900450047615
PAAPAADAFEP	11	Unmodified	_PAAPAADAFEP_					0	0	0			REV__SALL4|p.V205Cfs*35|1|0.25|ENSG00000101115|chr20:51791871-51791871|G/-|frameshift_variant	REV__SALL4|p.V205Cfs*35|1|0.25|ENSG00000101115|chr20:51791871-51791871|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	528.7589721679688	2	528.753464	1055.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.384	1	48.24	47.74	48.74	-0.1437								0	0	0	0.9414	1	18484	18484		10.824	0	1		+		23007	11115	14433	14519	22130	22130					-0.03315126690381476
PAAPAGRRRR	10	Unmodified	_PAAPAGRRRR_					0	0	0			REV__ENST00000598090.5_1_19:42706201-42721823:-|nuORF	REV__ENST00000598090.5_1_19:42706201-42721823:-|nuORF	MSMS	HCT116MG_D190212_S4	4	554.33203125	2	554.333947	1106.65334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.784	1	50.429	49.929	50.929	-0.35483								0	0	0	0.93576	1	18880	18880		7.9102	1.187	1		+		23008	12834	14434	14520	22131	22131					0.10428105256869458
PAAPAPLPPKP	11	Unmodified	_PAAPAPLPPKP_					0	0	0		VSTM2L|p.P184L|1|0.15|ENSG00000132821|chr20:37944189-37944189|C/T|missense_variant	VSTM2L|p.P184L|1|0.15|ENSG00000132821|chr20:37944189-37944189|C/T|missense_variant	VSTM2L|p.P184L|1|0.15|ENSG00000132821|chr20:37944189-37944189|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	528.3153076171875	2	528.316035	1054.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.995	1	49.831	49.331	50.331	-0.16369								0	0	0	0.9414	1	19150	19150		10.824	3.5347	1				23009	18693	14435	14521	22132	22132					0.09239210236637518
PAAPAPPGFW	10	Unmodified	_PAAPAPPGFW_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MSMS	HCT116MG_D190212_S3	3	505.7937927246094	2	505.758352	1009.50215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.863	1	50.549	50.049	51.049	-0.31381								0	0	0	0.91507	1	19191	19191		12.532	7.2347	1		+		23010	13685	14436	14522	22133	22133					-0.0022189389434288387
PAAPAPPTSTQ	11	Unmodified	_PAAPAPPTSTQ_					0	0	0		TENM1|p.P1166Qfs*6|1|0.82|ENSG00000009694|chrX:124497214-124497214|G/-|frameshift_variant;TENM1|p.L1382Ffs*3|1|0.63|ENSG00000009694|chrX:124422576-124422577|-/A|frameshift_variant;TENM1|p.M1863Wfs*25|1|0.38|ENSG00000009694|chrX:124392132-124392132|T/-|frameshift_variant;ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	TENM1|p.P1166Qfs*6|1|0.82|ENSG00000009694|chrX:124497214-124497214|G/-|frameshift_variant	TENM1|p.P1166Qfs*6|1|0.82|ENSG00000009694|chrX:124497214-124497214|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	519.037353515625	2	519.266739	1036.51892	0.59426	0.00030858	-0.40685	-0.00021126	0.18741	9.7315E-05	519.2664681598177	47.998	0.45893	47.865	47.636	48.095	-0.13281					15	8	4	0	0	0	0.72974	1	18414	18414		10.824	0	1	391120000			23011	868	14437	14523	22134	22134					0.002125622009543804
PAAPAPRLSLP	11	Unmodified	_PAAPAPRLSLP_					0	0	0			REV__ENST00000552382.5_1_12:54764042-54772879:-|nuORF	REV__ENST00000552382.5_1_12:54764042-54772879:-|nuORF	MSMS	HCT116MG_D190212_S4	4	545.7927856445312	2	545.324391	1088.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.617	1	51.266	50.766	51.766	-0.35028								0	0	0	0.9414	1	19216	19216		10.824	1.4408	1		+		23012	12853	14438	14524	22135	22135					0.09345711122614375
PAAPAQSYTAL	11	Unmodified	_PAAPAQSYTAL_					0	0	0		nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4	nc|ENSG00000154133|Q8WZ75-3|ROBO4	nc|ENSG00000154133|Q8WZ75-3|ROBO4	MSMS	HCT116MG_D190212_S2	2	545.2824096679688	2	545.282389	1088.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.821	1	48.677	48.177	49.177	-0.1437								0	0	0	0.9414	1	18664	18664		10.824	2.9138	1				23013	4208	14439	14525	22136	22136					0.009491352350323723
PAAPAQVPWP	10	Unmodified	_PAAPAQVPWP_					0	0	0		ENST00000216780.8_1_14:24563387-24566117:+|nuORF	ENST00000216780.8_1_14:24563387-24566117:+|nuORF	ENST00000216780.8_1_14:24563387-24566117:+|nuORF	MSMS	HCT116MG_D190212_S2	2	517.335693359375	2	517.276909	1032.53927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.071	1	47.938	47.438	48.438	-0.13281								0	0	0	0.84381	1	18354	18354		23.148	6.2061	1				23014	6742	14440	14526	22137	22137					0.024297776514231373
PAAPARKLPP	10	Unmodified	_PAAPARKLPP_					0	0	0		nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;ENST00000468713.5_1_6:30594689-30613691:+|nuORF;ATAT1|p.P300Hfs*31|2|0.39|ENSG00000137343|chr6:30642937-30642937|C/-|frameshift_variant	nc|ENSG00000137343|Q5SQI0-5|ATAT1;ATAT1|p.P300Hfs*31|2|0.39|ENSG00000137343|chr6:30642937-30642937|C/-|frameshift_variant	nc|ENSG00000137343|Q5SQI0-5|ATAT1	MSMS	HCT116MG_D190212_S2	2	509.31201171875	2	509.313826	1016.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.19	1	52.003	51.503	52.503	-0.18725								0	0	0	0.91507	1	20043	20043		12.532	4.6214	1				23015	9472;209	14441	14527	22138	22138					0.10545745813737994
PAAPARKLPP	10	Unmodified	_PAAPARKLPP_					0	0	0		nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;ENST00000468713.5_1_6:30594689-30613691:+|nuORF;ATAT1|p.P300Hfs*31|2|0.39|ENSG00000137343|chr6:30642937-30642937|C/-|frameshift_variant	nc|ENSG00000137343|Q5SQI0-5|ATAT1;ATAT1|p.P300Hfs*31|2|0.39|ENSG00000137343|chr6:30642937-30642937|C/-|frameshift_variant	nc|ENSG00000137343|Q5SQI0-5|ATAT1	MSMS	HCT116MG_D190212_S4	4	509.0000915527344	2	509.313826	1016.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.702	1	53.372	52.872	53.872	-0.32923								0	0	0	0.93576	1	20058	20058		7.9102	0	1				23016	9472;209	14441	14527	22139	22139					0.10545745813737994
PAAPARLALAL	11	Unmodified	_PAAPARLALAL_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;PKD1|p.V476Wfs*82|1|0.09|ENSG00000008710|chr16:2117013-2117013|C/-|frameshift_variant;PKD1|p.A696Rfs*18|1|0.23|ENSG00000008710|chr16:2115389-2115390|-/G|frameshift_variant	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MSMS	HCT116MG_D190212_S1	1	532.3324584960938	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.039	1	49.039	48.539	49.539	0								0	0	0	0.9414	1	18676	18676		10.824	0	1				23017	864	14442	14528	22140	22140					0.1261430150225351
PAAPARLALAL	11	Unmodified	_PAAPARLALAL_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;PKD1|p.V476Wfs*82|1|0.09|ENSG00000008710|chr16:2117013-2117013|C/-|frameshift_variant;PKD1|p.A696Rfs*18|1|0.23|ENSG00000008710|chr16:2115389-2115390|-/G|frameshift_variant	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MSMS	HCT116MG_D190212_S2	2	532.3327026367188	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.166	1	50.988	50.488	51.488	-0.17868								0	0	0	0.9414	1	19625	19625		10.824	0	1				23018	864	14442	14528	22141	22141					0.1261430150225351
PAAPDPAAS	9	Unmodified	_PAAPDPAAS_					0	0	0		ENST00000560300.1_1_15:61333313-61521429:-|nuORF;ENST00000561093.1_1_15:60970850-61521429:-|nuORF;ENST00000557822.5_1_15:60823934-61521429:-|nuORF;RORA|p.F145Lfs*38|1|0.09|ENSG00000069667|chr15:60511611-60511611|A/-|frameshift_variant;ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-3|RORA	ENST00000560300.1_1_15:61333313-61521429:-|nuORF	ENST00000560300.1_1_15:61333313-61521429:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	796.384521484375	1	796.383559	795.376283	0.84704	0.00067457	-0.62399	-0.00049694	0.22305	0.00017764	796.3831567953281	32.65	0.72934	32.365	31.883	32.612	-0.28511					20	13	2	0	0	0	0.1037	1	11894	11894		57.471	0	1	6206800			23019	1220	14443	14529	22142	22142					-0.029590254704316976
PAAPDPAAS	9	Unmodified	_PAAPDPAAS_					0	0	0		ENST00000560300.1_1_15:61333313-61521429:-|nuORF;ENST00000561093.1_1_15:60970850-61521429:-|nuORF;ENST00000557822.5_1_15:60823934-61521429:-|nuORF;RORA|p.F145Lfs*38|1|0.09|ENSG00000069667|chr15:60511611-60511611|A/-|frameshift_variant;ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-3|RORA	ENST00000560300.1_1_15:61333313-61521429:-|nuORF	ENST00000560300.1_1_15:61333313-61521429:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	796.3844604492188	1	796.383559	795.376283	0.8951	0.00071284	-0.25055	-0.00019953	0.64455	0.00051331	796.3835478337444	32.703	0.77846	32.324	31.793	32.572	-0.37924					24	14	2	0	0	0	0.065014	1	11827	11827		67.344	9.8725	1	7227200			23020	1220	14443	14529	22143	22143					-0.029590254704316976
PAAPFPGPPRR	11	Unmodified	_PAAPFPGPPRR_					0	0	0			REV__ENSG00000158292|ENST00000377893|GPR153	REV__ENSG00000158292|ENST00000377893|GPR153	MSMS	HCT116MG_D190212_S1	1	581.8275756835938	2	581.827632	1161.64071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.255	1	50.255	49.755	50.755	0								0	0	0	0.94924	1	19170	19170		6.7232	0	1		+		23021	12779	14444	14530	22144	22144					0.06635649073996319
PAAPIPTQMPP	11	Unmodified	_PAAPIPTQMPP_					0	0	0		nc|ENSG00000119689|P36957-2|DLST;ENSG00000119689|ENST00000334220|DLST	nc|ENSG00000119689|P36957-2|DLST	nc|ENSG00000119689|P36957-2|DLST	MSMS	HCT116MG_D190212_S3	3	560.1784057617188	2	560.296985	1118.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.156	1	49.841	49.341	50.341	-0.31525								0	0	0	0.9414	1	18906	18906		10.824	2.9138	1				23022	2659	14445	14531	22145	22145					0.024869562596677497
PAAPLALPPPA	11	Unmodified	_PAAPLALPPPA_					0	0	0			REV__ENST00000302904.8_1_17:42294008-42298982:-|nuORF	REV__ENST00000302904.8_1_17:42294008-42298982:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.33380126953125	2	507.80276	1013.59097	0.57893	0.00029398	1.7097	0.0008682	2.2886	0.0011622	508.30471806282105	48.329	0.30431	48.185	48.084	48.388	-0.1437					11	5	3	0	0	0	0.72974	1	18427	18427		10.824	2.9138	1	122690000	+		23023	14800	14446	14532	22146	22146					0.08471521345313704
PAAPNPSRPKS	11	Unmodified	_PAAPNPSRPKS_					0	0	0			REV__nc|ENSG00000162522|Q9P206|NHSL3	REV__nc|ENSG00000162522|Q9P206|NHSL3	MSMS	HCT116MG_D190212_S3	3	561.3059692382812	2	561.306729	1120.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.139	1	51.829	51.329	52.329	-0.30927								0	0	0	0.94416	1	19703	19703		9.3831	0	1		+		23024	12879	14447	14533	22147	22147					0.04343048594796528
PAAPPLPMKVA	11	Unmodified	_PAAPPLPMKVA_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MSMS	HCT116MG_D190212_S1	1	546.1524047851562	2	546.31772	1090.62089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.406	1	49.406	48.906	49.906	0								0	0	0	0.95023	1	18825	18825		6.2058	0.47393	1				23025	4465	14448	14534	22148	22148					0.07920137019027607
PAAPRGPA	8	Unmodified	_PAAPRGPA_					0	0	0		nc|ENSG00000159216|Q01196-10|RUNX1;GAA|p.E795G|1|0.52|ENSG00000171298|chr17:80117652-80117652|A/G|missense_variant	nc|ENSG00000159216|Q01196-10|RUNX1	nc|ENSG00000159216|Q01196-10|RUNX1	MULTI-SECPEP	HCT116MG_D190212_S4	4	368.6849365234375	2	368.708663	735.402772	-0.00094298	-3.4769E-07	-0.054852	-2.0224E-05	-0.055795	-2.0572E-05	368.7085485758131	19.852	0.30216	19.658	19.434	19.736	-0.19367					7	5	2	0	0	0	0.2761	1	6694	6694		20.871	0	1	2960100			23026	9514	14449	14535	22149	22149					0.024487082115683734
PAAPRPRPR	9	Unmodified	_PAAPRPRPR_					0	0	0		ENST00000296350.9_1_3:196729467-196730019:-|nuORF	ENST00000296350.9_1_3:196729467-196730019:-|nuORF	ENST00000296350.9_1_3:196729467-196730019:-|nuORF	MSMS	HCT116MG_D190212_S1	1	509.30572509765625	2	509.306867	1016.59918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.342	1	49.342	48.842	49.842	0								0	0	0	0.7676	1	18799	18799		9.3474	0	1				23027	6982	14450	14536	22150	22150					0.09154513105318074
PAAPTKKKME	10	Unmodified	_PAAPTKKKME_					0	0	0			REV__ENSG00000011677|ENST00000370314|GABRA3	REV__ENSG00000011677|ENST00000370314|GABRA3	MSMS	HCT116MG_D190212_S1	1	550.4489135742188	2	550.810259	1099.60597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.823	1	49.823	49.323	50.323	0								0	0	0	0.93576	1	18995	18995		7.9102	0	1		+		23028	10526	14451	14537	22151	22151					0.06014645151026343
PAAPVLASPPS	11	Unmodified	_PAAPVLASPPS_					0	0	0			REV__ENST00000521334.5_3_14:91526698-91626657:+|nuORF	REV__ENST00000521334.5_3_14:91526698-91626657:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	504.64593505859375	2	503.782025	1005.5495	0.3269	0.00016469	0.06787	3.4191E-05	0.39477	0.00019888	503.78197764388653	51.002	0.67931	50.688	50.386	51.065	-0.31381					28	12	4	0	0	0	0.74191	1	19152	19152		3.2813	0	1	117580000	+		23029	16238	14452	14538	22152	22152					0.046943405859906306
PAAQERRSP	9	Unmodified	_PAAQERRSP_					0	0	0		ENST00000306149.11_1_22:41957107-41967970:+|nuORF	ENST00000306149.11_1_22:41957107-41967970:+|nuORF	ENST00000306149.11_1_22:41957107-41967970:+|nuORF	MSMS	HCT116MG_D190212_S2	2	505.9590148925781	2	506.270147	1010.52574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.738	1	49.574	49.074	50.074	-0.16369								0	0	0	0.71969	1	19044	19044		18.135	3.2967	1				23030	7026	14453	14539	22153	22153					0.02089919872196333
PAAQGRLTRVL	11	Unmodified	_PAAQGRLTRVL_					0	0	0		ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	MSMS	HCT116MG_D190212_S3	3	590.8870849609375	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.347	1	52.04	51.54	52.54	-0.30767								0	0	0	0.95521	1	19787	19787		3.5965	0	1				23031	3161	14454	14540	22154	22154					0.12091589791225488
PAAQGRLTRVL	11	Unmodified	_PAAQGRLTRVL_					0	0	0		ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	MSMS	HCT116MG_D190212_S3	3	591.3588256835938	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.409	1	52.103	51.603	52.603	-0.30639								0	0	0	0.95521	1	19812	19812		3.5965	0	1				23032	3161	14454	14540	22155	22155					0.12091589791225488
PAAQGRLTRVL	11	Unmodified	_PAAQGRLTRVL_					0	0	0		ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	MSMS	HCT116MG_D190212_S3	3	591.3584594726562	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.989	1	52.685	52.185	53.185	-0.30363								0	0	0	0.95521	1	20045	20045		3.5965	0	1				23033	3161	14454	14540	22156	22156					0.12091589791225488
PAAQGRLTRVL	11	Unmodified	_PAAQGRLTRVL_					0	0	0		ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	MSMS	HCT116MG_D190212_S3	3	591.3363037109375	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.974	1	53.674	53.174	54.174	-0.29946								0	0	0	0.95521	1	20441	20441		3.5965	0	1				23034	3161	14454	14540	22157	22157					0.12091589791225488
PAAQQHGQ	8	Unmodified	_PAAQQHGQ_					0	0	0		ENST00000555617.5_1_14:74759536-74766325:-|nuORF;ENST00000469672.5_1_14:74762559-74769587:-|nuORF	ENST00000555617.5_1_14:74759536-74766325:-|nuORF	ENST00000555617.5_1_14:74759536-74766325:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	418.7222900390625	2	418.704109	835.393664	0.036835	1.5423E-05	0.10839	4.5383E-05	0.14522	6.0806E-05	418.7040986844354	16.988	0.41625	16.639	16.457	16.873	-0.34933					10	7	2	0	0	0	0.32917	1	5720	5720		6.3541	0.59368	1	5756400			23035	8139	14455	14541	22158	22158					-0.030616851447575755
PAAQQTVFTI	10	Unmodified	_PAAQQTVFTI_					0	0	0		nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;ENST00000468920.2_1_12:111893805-111895209:-|nuORF;nc|ENSG00000204842|Q99700-3|ATXN2;ENST00000482777.5_1_12:111893805-111908601:-|nuORF;nc|ENSG00000204842|Q99700-5|ATXN2	nc|ENSG00000204842|Q99700-4|ATXN2	nc|ENSG00000204842|Q99700-4|ATXN2	MSMS	HCT116MG_D190212_S2	2	538.292724609375	2	538.292756	1074.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.12	1	49.956	49.456	50.456	-0.16369								0	0	0	0.85468	1	19202	19202		21.747	8.2388	1				23036	9611	14456	14542	22159	22159					0.036657256147236694
PAARCPCSDFF	11	Unmodified	_PAARCPCSDFF_					0	0	0		ENST00000510104.5_1_5:140071123-140075505:+|nuORF	ENST00000510104.5_1_5:140071123-140075505:+|nuORF	ENST00000510104.5_1_5:140071123-140075505:+|nuORF	MSMS	HCT116MG_D190212_S2	2	607.2577514648438	2	607.260076	1212.5056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.453	1	15.126	14.626	15.626	-0.32684								0	0	0	0.95113	1	5135	5135		5.7319	0.43497	1				23037	8491	14457	14543	22160	22160					-0.09215335174303618
PAARDLLEP	9	Unmodified	_PAARDLLEP_					0	0	0			REV__ZDHHC8|p.T459Rfs*177|6|0.31|ENSG00000099904|chr22:20142999-20142999|C/-|frameshift_variant	REV__ZDHHC8|p.T459Rfs*177|6|0.31|ENSG00000099904|chr22:20142999-20142999|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	491.27178955078125	2	491.271824	980.529095	0.1451	7.1286E-05	0.12649	6.2143E-05	0.2716	0.00013343	491.27174375465154	32.439	0.41673	32.161	31.994	32.41	-0.27841					9	7	2	0	0	0	0.24195	1	11936	11936		7.9102	2.6795	1	2051100	+		23038	11050	14458	14544	22161	22161					0.038051699261814065
PAARDLLEP	9	Unmodified	_PAARDLLEP_					0	0	0			REV__ZDHHC8|p.T459Rfs*177|6|0.31|ENSG00000099904|chr22:20142999-20142999|C/-|frameshift_variant	REV__ZDHHC8|p.T459Rfs*177|6|0.31|ENSG00000099904|chr22:20142999-20142999|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	491.271824	980.529095	0.15161	7.4484E-05	0.16444	8.0785E-05	0.31605	0.00015527	491.27173421815604	32.464	0.31189	32.234	31.995	32.306	-0.23009	0.036586	2.5344E-05	NaN	7.9102	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7564100	+		23039	11050	14458	14544							0.038051699261814065
PAARGPRRGRQ	11	Unmodified	_PAARGPRRGRQ_					0	0	0		ENST00000522111.2_2_1:27320200-27320401:+|nuORF	ENST00000522111.2_2_1:27320200-27320401:+|nuORF	ENST00000522111.2_2_1:27320200-27320401:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	611.3568115234375	2	611.355411	1220.69627	0.72935	0.00044589	0.36452	0.00022285	1.0939	0.00066874	611.3555119286134	50.004	0.79522	49.645	49.465	50.261	-0.35878					24	16	2	0	0	0	0.36607	1	18727	18727		0	0	1	5575500			23040	8562	14459	14545	22162	22162					0.09474875314322162
PAARKRVR	8	Unmodified	_PAARKRVR_					0	0	0			REV__ENST00000317704.8_1_1:77747869-77779575:+|nuORF	REV__ENST00000317704.8_1_1:77747869-77779575:+|nuORF	MSMS	HCT116MG_D190212_S3	3	477.38555908203125	2	477.30941	952.604266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.354	1	50.038	49.538	50.538	-0.31525								0	0	0	0.8837	1	18986	18986		6.3541	0.59368	1		+		23041	14869	14460	14546	22163	22163					0.12606816967945633
PAARKRVR	8	Unmodified	_PAARKRVR_					0	0	0			REV__ENST00000317704.8_1_1:77747869-77779575:+|nuORF	REV__ENST00000317704.8_1_1:77747869-77779575:+|nuORF	MSMS	HCT116MG_D190212_S3	3	477.2963562011719	2	477.30941	952.604266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.816	1	50.502	50.002	51.002	-0.31381								0	0	0	0.8837	1	19172	19172		6.3541	0.59368	1		+		23042	14869	14460	14546	22164	22164					0.12606816967945633
PAARPPAA	8	Unmodified	_PAARPPAA_					0	0	0		nc|ENSG00000100095|Q9BYH1-5|SEZ6L;nc|ENSG00000100095|Q9BYH1-4|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L	nc|ENSG00000100095|Q9BYH1-5|SEZ6L	nc|ENSG00000100095|Q9BYH1-5|SEZ6L	MSMS	HCT116MG_D190212_S1	1	375.7156677246094	2	375.716488	749.418422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.116	1	52.116	51.616	52.616	0								0	0	0	0.8837	1	19925	19925		2.8892	0	1				23043	1664	14461	14547	22165	22165					0.033689947286120514
PAARPRPPAR	10	Unmodified	_PAARPRPPAR_					0	0	0			REV__ENST00000392025.5_1_19:41074088-41077932:+|nuORF	REV__ENST00000392025.5_1_19:41074088-41077932:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	544.8248291015625	2	544.825424	1087.63629	0.59917	0.00032644	-1.2364	-0.0006736	-0.63719	-0.00034716	544.824794302021	53.334	0.83642	53.031	52.669	53.505	-0.30304					25	15	2	0	0	0	0.87641	1	20157	20157		4.3292	0	1	4443500	+		23044	15306	14462	14548	22166	22166					0.09598184651076735
PAARQARV	8	Unmodified	_PAARQARV_					0	0	0		FZD5|p.N350Qfs*249|1|0.14|ENSG00000163251|chr2:207767693-207767694|-/C|frameshift_variant	FZD5|p.N350Qfs*249|1|0.14|ENSG00000163251|chr2:207767693-207767694|-/C|frameshift_variant	FZD5|p.N350Qfs*249|1|0.14|ENSG00000163251|chr2:207767693-207767694|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	868.5116577148438	1	868.51116	867.503883	0.73191	0.00063567	0.61417	0.00053341	1.3461	0.0011691	868.5115336488423	47.263	0.89569	47.263	46.699	47.595	0					47	17	5	0	0	0	0.86564	1	17886	17886		2.5775	0	1	2568100000			23045	9174	14463	14549	22167	22167					0.06483159914284897
PAARQLRGAP	10	Unmodified	_PAARQLRGAP_					0	0	0			REV__ENST00000256257.1_1_8:33424221-33424608:-|nuORF	REV__ENST00000256257.1_1_8:33424221-33424608:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	518.804443359375	2	518.804157	1035.59376	0.25706	0.00013336	0.13437	6.971E-05	0.39143	0.00020307	518.8043007793431	21.112	0.26028	20.729	20.598	20.859	-0.38288					9	4	3	0	0	0	0.80458	1	7444	7444		11.64	1.5664	1	13142000	+		23046	14610	14464	14550	22168	22168					0.07738789522841216
PAARSRPIRV	10	Unmodified	_PAARSRPIRV_					0	0	0		DNMT3B|p.R572S|1|0.66|ENSG00000088305|chr20:32799285-32799285|G/C|missense_variant	DNMT3B|p.R572S|1|0.66|ENSG00000088305|chr20:32799285-32799285|G/C|missense_variant	DNMT3B|p.R572S|1|0.66|ENSG00000088305|chr20:32799285-32799285|G/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	561.4473876953125	2	561.846356	1121.67816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.194	1	51.849	51.349	52.349	-0.34538								0	0	0	0.95179	1	19450	19450		4.3292	0	1				23047	720	14465	14551	22169	22169					0.12218740339608303
PAARVLSSR	9	Unmodified	_PAARVLSSR_					0	0	0		nc|ENSG00000173599|P11498-2|PC	nc|ENSG00000173599|P11498-2|PC	nc|ENSG00000173599|P11498-2|PC	MULTI-MSMS	HCT116MG_D190212_S2	2	478.7851257324219	2	478.785433	955.556313	-0.089053	-4.2637E-05	0.14808	7.09E-05	0.05903	2.8263E-05	478.785308759809	49.773	1.6977	49.609	49.127	50.825	-0.16369					78	32	4	0	0	0	0.71345	1	19039	19039		4.3292	0	1	713270000			23048	9554	14466	14552	22170	22170					0.07675698257241947
PAARVLSSR	9	Unmodified	_PAARVLSSR_					0	0	0		nc|ENSG00000173599|P11498-2|PC	nc|ENSG00000173599|P11498-2|PC	nc|ENSG00000173599|P11498-2|PC	MULTI-MSMS	HCT116MG_D190212_S3	3	478.785400390625	2	478.785433	955.556313	0.14863	7.1161E-05	0.14808	7.0898E-05	0.29671	0.00014206	478.7854059543937	50.445	1.4623	50.131	49.76	51.222	-0.31435					63	27	4	0	0	0	0.71345	1	18949	18949		4.3292	0	1	67247000			23049	9554	14466	14552	22171	22171					0.07675698257241947
PAASEEQLLLV	11	Unmodified	_PAASEEQLLLV_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MSMS	HCT116MG_D190212_S2	2	585.7811889648438	2	585.324254	1168.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.945	1	24.57	24.07	25.07	-0.37521								0	0	0	0.9387	1	8962	8962		12.241	0	1				23050	1427	14467	14553	22172	22172					0.056382466121021935
PAASRTRSYLK	11	Unmodified	_PAASRTRSYLK_					0	0	0		ENST00000486076.5_1_1:151043363-151060721:+|nuORF	ENST00000486076.5_1_1:151043363-151060721:+|nuORF	ENST00000486076.5_1_1:151043363-151060721:+|nuORF	MSMS	HCT116MG_D190212_S4	4	625.3548583984375	2	625.354211	1248.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.252	1	50.902	50.402	51.402	-0.35028								0	0	0	0.95521	1	19069	19069		3.5965	0.31518	1				23051	8291	14468	14554	22173	22173					0.07946982066005148
PAASSTGPLHP	11	Unmodified	_PAASSTGPLHP_					0	0	0			REV__ASXL1|p.E705Sfs*20|1|0.46|ENSG00000171456|chr20:32434822-32434822|G/-|frameshift_variant	REV__ASXL1|p.E705Sfs*20|1|0.46|ENSG00000171456|chr20:32434822-32434822|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.246337890625	2	517.766906	1033.51926	0.26774	0.00013863	-0.23627	-0.00012233	0.03147	1.6294E-05	517.7666911832162	17.51	0.83588	17.161	16.821	17.657	-0.34933					22	15	2	0	0	0	0.3453	1	6011	6011		18.146	0	1	4317800	+		23052	9996	14469	14555	22174	22174					0.0038398192079966975
PAASVLTIKGL	11	Unmodified	_PAASVLTIKGL_					0	0	0			REV__ENSG00000112304|ENST00000230048|ACOT13	REV__ENSG00000112304|ENST00000230048|ACOT13	MSMS	HCT116MG_D190212_S1	1	535.3339233398438	2	535.334424	1068.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.147	1	16.147	15.647	16.647	0								0	0	0	0.94924	1	5414	5414		6.7232	1.4925	1		+		23053	11455	14470	14556	22175	22175					0.12271462062562932
PAATPSAEPPA	11	Unmodified	_PAATPSAEPPA_					0	0	0			REV__nc|ENSG00000179262|P54725-2|RAD23A	REV__nc|ENSG00000179262|P54725-2|RAD23A	MSMS	HCT116MG_D190212_S2	2	504.7554016113281	2	504.753464	1007.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.543	1	15.216	14.716	15.716	-0.32684								0	0	0	0.81739	1	5171	5171		30.637	1.1994	1		+		23054	13634	14471	14557	22176	22176					-0.011071266903854848
PAATRWSWWHW	11	Unmodified	_PAATRWSWWHW_					0	0	0		ENST00000508784.5_1_4:146824055-146859708:-|nuORF	ENST00000508784.5_1_4:146824055-146859708:-|nuORF	ENST00000508784.5_1_4:146824055-146859708:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	494.7348937988281	3	495.238789	1482.69454	0.14935	7.3966E-05	-4.0523	-0.0020069	-3.903	-0.0019329	495.23589486337755	49.474	0.20963	49.158	49.079	49.289	-0.31596					5	3	2	0	0	0	0.36587	1	18656	18656		3.0723	0.22898	1	4388700			23055	8480	14472	14558	22177	22177					-0.02750178494306965
PAAVQTEEQY	10	Unmodified	_PAAVQTEEQY_					0	0	0		PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant;ENSG00000072135|ENST00000175756|PTPN18;ENST00000490812.5_1_2:131128247-131129758:+|nuORF;nc|ENSG00000072135|Q99952-2|PTPN18	PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant	PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	568.2662963867188	2	568.266936	1134.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.48	1	41.178	40.678	41.678	-0.30185								0	0	0	0.92607	1	15431	15431		10.074	3.8681	1				23056	9792	14473	14559	22178	22178					-0.04256062869831112
PAAWGCMCL	9	Unmodified	_PAAWGCMCL_					0	0	0			REV__ENST00000373932.3_1_20:34824412-34824526:+|nuORF	REV__ENST00000373932.3_1_20:34824412-34824526:+|nuORF	MSMS	HCT116MG_D190212_S3	3	475.74530029296875	2	476.197902	950.38125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.808	1	50.495	49.995	50.995	-0.31381								0	0	0	0.7676	1	19169	19169		9.3474	2.9933	1		+		23057	15198	14474	14560	22179	22179					-0.09592504195313722
PAAYDWCVYMD	11	Unmodified	_PAAYDWCVYMD_					0	0	0			REV__nc|ENSG00000010310|P48546-2|GIPR	REV__nc|ENSG00000010310|P48546-2|GIPR	MSMS	HCT116MG_D190212_S3	3	667.263671875	2	667.265024	1332.5155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.56	1	49.244	48.744	49.744	-0.31596								0	0	0	0.95521	1	18666	18666		3.5965	2.1146	1		+		23058	10515	14475	14561	22180	22180					-0.13746191959603493
PAAYILWTP	9	Unmodified	_PAAYILWTP_					0	0	0		ENST00000305596.7_1_16:30363422-30363596:-|nuORF	ENST00000305596.7_1_16:30363422-30363596:-|nuORF	ENST00000305596.7_1_16:30363422-30363596:-|nuORF	MSMS	HCT116MG_D190212_S2	2	516.7700805664062	2	516.28166	1030.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.936	1	19.561	19.061	20.061	-0.37503								0	0	0	0.30227	1	6941	6941		39.957	3.8303	1				23059	7024	14476	14562	22181	22181					0.03471545936940856
PAAYMLIQPRD	11	Unmodified	_PAAYMLIQPRD_					0	0	0			REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MSMS	HCT116MG_D190212_S1	1	425.8796691894531	3	425.556907	1273.64889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.617	1	14.617	14.117	15.117	0								0	0	0	0.95581	1	4798	4798		1.3296	0	1		+		23060	11465	14477	14563	22182	22182					0.023014152084442685
PACAFCAS	8	Unmodified	_PACAFCAS_					0	0	0			REV__nc|ENSG00000081307|Q9GZZ9-2|UBA5	REV__nc|ENSG00000081307|Q9GZZ9-2|UBA5	MSMS	HCT116MG_D190212_S3	3	385.15289306640625	2	385.154017	768.293481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7322	1	1.7931	1.2931	2.2931	0.060905								0	0	0	0.8837	1	540	540		0.79363	0	1		+		23061	10878	14478	14564	22183	22183					-0.09993381794436118
PACDFQATHP	10	Unmodified	_PACDFQATHP_					0	0	0		IL6ST|p.V530*|4|0.3|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;ENST00000503773.6_1_5:55236912-55256289:-|nuORF;IL6ST|p.P703Qfs*19|1|0.08|ENSG00000134352|chr5:55941731-55941732|-/ATCT|frameshift_variant;IL6ST|p.S731Lfs*57|1|0.13|ENSG00000134352|chr5:55941649-55941649|C/-|frameshift_variant;ENSG00000134352|ENST00000381298|IL6ST	IL6ST|p.V530*|4|0.3|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant	IL6ST|p.V530*|4|0.3|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	543.7355346679688	2	543.737291	1085.46003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.984	1	15.649	15.149	16.149	-0.33451								0	0	0	0.86501	1	5349	5349		20.415	3.4722	1				23062	3282	14479	14565	22184	22184					-0.07928237365035784
PACTPAAP	8	Unmodified	_PACTPAAP_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	MULTI-SECPEP	HCT116MG_D190212_S2	2	363.67462158203125	2	364.175807	726.337061	0.045361	1.652E-05	-0.045516	-1.6576E-05	-0.00015439	-5.6226E-08	364.1757715024217	24.124	0.25877	23.744	23.563	23.822	-0.38003					7	4	2	0	0	0	0.32196	1	8645	8645		6.3541	0	1	5221300			23063	9461	14480	14566	22185	22185					-0.037054490256537065
PADAPAPGD	9	Unmodified	_PADAPAPGD_					0	0	0			REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	810.3645629882812	1	810.362824	809.355547	0.93164	0.00075497	-0.15895	-0.00012881	0.77269	0.00062616	810.3625911934927	20.647	1.1949	20.445	20.092	21.287	-0.20133					32	22	2	0	0	0	0.11731	1	7018	7018		54.774	1.198	1	4944100	+		23064	11945	14481	14567	22186	22186					-0.05675615850088889
PADLLLFLIL	10	Unmodified	_PADLLLFLIL_					0	0	0		ENST00000455309.1_1_2:112249080-112249152:+|nuORF	ENST00000455309.1_1_2:112249080-112249152:+|nuORF	ENST00000455309.1_1_2:112249080-112249152:+|nuORF	MSMS	HCT116MG_D190212_S3	3	564.3590698242188	2	564.357368	1126.70018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.039	1	50.725	50.225	51.225	-0.31379								0	0	0	0.96291	1	19262	19262		1.8442	0	1				23065	8017	14482	14568	22187	22187					0.14190107244803585
PADMELDSDME	11	Unmodified	_PADMELDSDME_					0	0	0		ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	ENSG00000033030|ENST00000633063|ZCCHC8	MSMS	HCT116MG_D190212_S3	3	626.7384643554688	2	626.739036	1251.46352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.747	1	53.448	52.948	53.948	-0.29946								0	0	0	0.95023	1	20349	20349		6.2058	1.4498	1				23066	972	14483	14569	22188	22188					-0.15215400163992854
PADPDGGPRPQ	11	Unmodified	_PADPDGGPRPQ_					0	0	0		ENSG00000088888|ENST00000428216|MAVS;nc|ENSG00000088888|Q7Z434-4|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-MSMS	HCT116MG_D190212_S4	4	553.7647094726562	2	553.764894	1105.51524	0.39455	0.00021849	0.17881	9.9021E-05	0.57336	0.00031751	553.7649568475204	19.03	0.77983	18.843	18.453	19.233	-0.18674					25	14	2	0	0	0	0.7259	1	6357	6357		12.241	2.1667	1	3854300			23067	1503	14484	14570	22189	22189					-0.033301075729013974
PADPSHLSPP	10	Unmodified	_PADPSHLSPP_					0	0	0		ENSG00000237441|ENST00000497454|RGL2;ENST00000483151.5_1_6:33259881-33261471:-|nuORF	ENSG00000237441|ENST00000497454|RGL2	ENSG00000237441|ENST00000497454|RGL2	MULTI-SECPEP	HCT116MG_D190212_S3	3	509.73309326171875	2	509.253631	1016.49271	0.11451	5.8315E-05	0.60955	0.00031042	0.72406	0.00036873	509.254061028047	21.332	0.83986	21.35	20.855	21.694	0.018446					21	15	2	0	0	0	0.29442	1	7317	7317		10.074	0	1	4685700			23068	6529	14485	14571	22190	22190					-0.014877069705221402
PADSLPAA	8	Unmodified	_PADSLPAA_					0	0	0			REV__ENST00000593644.1_1_19:50031828-50040290:+|nuORF	REV__ENST00000593644.1_1_19:50031828-50040290:+|nuORF	MSMS	HCT116MG_D190212_S3	3	371.10113525390625	2	371.192511	740.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.188	1	25.082	24.582	25.582	-0.10618								0	0	0	0.8837	1	8980	8980		6.3541	0.59368	1		+		23069	12357	14486	14572	22191	22191					-0.01010123982098321
PAEDMARYY	9	Unmodified	_PAEDMARYY_					0	0	0		ENSG00000122585|ENST00000242152|NPY	ENSG00000122585|ENST00000242152|NPY	ENSG00000122585|ENST00000242152|NPY	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.7352294921875	2	558.244949	1114.47534	0.47727	0.00026643	-3.8778	-0.0021648	-3.4005	-0.0018983	558.2423631756586	48.773	0.25397	48.629	48.439	48.693	-0.1437					7	4	2	0	0	0	0.2622	1	18584	18584		2.0598	0	1	41939000			23070	2771	14487	14573	22192	22192					-0.07731370567830709
PAEGCSMT	8	Unmodified	_PAEGCSMT_					0	0	0			REV__ENST00000361837.8_1_16:2512483-2514109:+|nuORF	REV__ENST00000361837.8_1_16:2512483-2514109:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	797.7010498046875	1	795.301152	794.293875	0.47997	0.00038172	1.2478	0.00099239	1.7278	0.0013741	795.302071280108	47.8	0.36375	47.485	47.308	47.671	-0.31524					13	6	3	0	0	0	0.78216	1	17929	17929		13.508	8.2772	1	13003000	+		23071	15101	14488	14574	22193	22193					-0.11150006865238993
PAEGCSMT	8	Unmodified	_PAEGCSMT_					0	0	0			REV__ENST00000361837.8_1_16:2512483-2514109:+|nuORF	REV__ENST00000361837.8_1_16:2512483-2514109:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	795.301152	794.293875	0.47997	0.00038172	1.2478	0.00099239	1.7278	0.0013741	795.302071280108	47.8	0.36375	47.485	47.308	47.671	-0.31524	0.04224	0.00025956	NaN	13.508	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13003000	+		23072	15101	14488	14574							-0.11150006865238993
PAEGGPRGSEQ	11	Unmodified	_PAEGGPRGSEQ_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	MULTI-MSMS	HCT116MG_D190212_S3	3	542.75537109375	2	542.754527	1083.4945	0.43156	0.00023423	0.054599	2.9634E-05	0.48616	0.00026386	542.7545652201039	18.467	0.88492	18.544	17.841	18.726	0.076334					18	16	2	0	0	0	0.50445	1	6263	6263		45.74	9.6129	1	3051600			23073	9373	14489	14575	22194	22194					-0.043906979525672796
PAEGGPRGSEQ	11	Unmodified	_PAEGGPRGSEQ_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	MULTI-SECPEP	HCT116MG_D190212_S4	4	542.772705078125	2	542.754527	1083.4945	0.39137	0.00021242	-0.15273	-8.2895E-05	0.23864	0.00012952	542.7545165905755	18.636	0.41583	18.455	18.251	18.667	-0.18052					12	7	2	0	0	0	0.34807	1	6325	6325		12.241	2.8575	1	3155900			23074	9373	14489	14575	22195	22195					-0.043906979525672796
PAEKHFQE	8	Unmodified	_PAEKHFQE_					0	0	0			REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant	REV__DNAH9|p.G3533Dfs*40|1|0.29|ENSG00000007174|chr17:11880190-11880190|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	493.3728332519531	2	493.240524	984.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.294	1	48.151	47.651	48.651	-0.1437								0	0	0	0.8837	1	18447	18447		13.508	0.97634	1		+		23075	10388	14490	14576	22196	22196					-0.026359761420053474
PAEPSQPSGP	10	Unmodified	_PAEPSQPSGP_					0	0	0		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	HCT116MG_D190212_S3	3	485.2396545410156	2	483.729989	965.445425	0.26284	0.00012714	0.59135	0.00028605	0.85419	0.0004132	483.7299315491063	24.877	0.62502	24.794	24.549	25.174	-0.083694					38	11	5	0	0	0	0.40515	1	8930	8930		41.84	15.571	1	61321000			23076	3619	14491	14577	22197	22197					-0.03867986241516519
PAEPSTLCCT	10	Unmodified	_PAEPSTLCCT_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-3|DLEC1	REV__nc|ENSG00000008226|Q9Y238-3|DLEC1	MULTI-MSMS	HCT116MG_D190212_S4	4	511.2203674316406	2	511.220085	1020.42562	0.18442	9.4278E-05	0.53698	0.00027451	0.72139	0.00036879	511.22023963382696	34.922	0.41064	34.536	34.287	34.698	-0.38606					12	7	2	0	0	0	0.65652	1	12749	12749		24.021	0	1	10625000	+		23077	17065	14492	14578	22198	22198					-0.08377821568149102
PAERWFDCRRR	11	Unmodified	_PAERWFDCRRR_					0	0	0			REV__ENST00000422941.6_1_14:23607156-23612305:-|nuORF	REV__ENST00000422941.6_1_14:23607156-23612305:-|nuORF	MSMS	HCT116MG_D190212_S3	3	497.8494567871094	3	497.917721	1490.73133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.084	1	49.769	49.269	50.269	-0.31525								0	0	0	0.95925	1	18877	18877		0.50596	0.051438	1		+		23078	15533	14493	14579	22199	22199					0.005597500599151317
PAFMLKKI	8	Unmodified	_PAFMLKKI_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-MSMS	HCT116MG_D190212_S2	2	474.29107666015625	2	474.290974	946.567395	0.29492	0.00013988	-0.25558	-0.00012122	0.039338	1.8658E-05	474.2907927453474	51.415	2.2168	51.236	50.5	52.717	-0.17868					55	42	2	0	0	0	0.84415	1	19637	19637		6.3541	6.3541	1	31773000			23079	1542	14494	14580	22200	22200					0.09197384307162793
PAFMLKKI	8	Unmodified	_PAFMLKKI_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	474.290974	946.567395	0.037401	1.7739E-05	-0.050496	-2.395E-05	-0.013096	-6.2111E-06	474.29088329557345	51.061	0.8261	51.061	50.368	51.194	0	-0.087541	9.992E-05	NaN	6.3541	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92343000			23080	1542	14494	14580							0.09197384307162793
PAFPGASPQLP	11	Unmodified	_PAFPGASPQLP_					0	0	0		ENST00000486084.1_1_1:161008196-161008283:-|nuORF	ENST00000486084.1_1_1:161008196-161008283:-|nuORF	ENST00000486084.1_1_1:161008196-161008283:-|nuORF	MSMS	HCT116MG_D190212_S4	4	541.2855224609375	2	541.287474	1080.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.555	1	51.205	50.705	51.705	-0.35028								0	0	0	0.94416	1	19191	19191		9.3831	2.0939	1				23081	8292	14495	14581	22201	22201					0.023337429602634074
PAFPPPLLLP	10	Unmodified	_PAFPPPLLLP_					0	0	0		PRCC-RRNAD1|3|fusion;PRCC-RRNAD1|2|fusion;PRCC|p.P70T|1|0.3|ENSG00000143294|chr1:156767979-156767979|C/A|missense_variant;PRCC|p.P92Hfs*5|1|0.29|ENSG00000143294|chr1:156768041-156768041|C/-|frameshift_variant;PRCC-RRNAD1|1|fusion;PRCC|p.E322Nfs*105|1|0.15|ENSG00000143294|chr1:156787047-156787047|C/-|frameshift_variant;PRCC|p.K454Nfs*18|1|0.38|ENSG00000143294|chr1:156797312-156797312|A/-|frameshift_variant;ENSG00000143294|ENST00000271526|PRCC	PRCC-RRNAD1|3|fusion	PRCC-RRNAD1|3|fusion	MSMS	HCT116MG_D190212_S3	3	531.324951171875	2	531.323328	1060.6321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.066	1	53.767	53.267	54.267	-0.29946								0	0	0	0.93576	1	20478	20478		7.9102	0	1				23082	9775	14496	14582	22202	22202					0.10421282384800179
PAFPRPEPQQ	10	Unmodified	_PAFPRPEPQQ_					0	0	0		RNF216|p.R426Gfs*7|1|0.23|ENSG00000011275|chr7:5725381-5725381|T/-|frameshift_variant;RNF216|p.K414Nfs*19|1|0.24|ENSG00000011275|chr7:5725415-5725415|T/-|frameshift_variant;RNF216|p.S387Lfs*47|1|0.13|ENSG00000011275|chr7:5729492-5729493|-/GG|frameshift_variant;ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216	RNF216|p.R426Gfs*7|1|0.23|ENSG00000011275|chr7:5725381-5725381|T/-|frameshift_variant	RNF216|p.R426Gfs*7|1|0.23|ENSG00000011275|chr7:5725381-5725381|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	583.7991333007812	2	583.80128	1165.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.685	1	22.667	22.167	23.167	-0.018869								0	0	0	0.87318	1	7972	7972		19.362	5.4559	1				23083	890	14497	14583	22203	22203					0.011836462205110365
PAGAAAEPAEG	11	Unmodified	_PAGAAAEPAEG_					0	0	0		ENST00000405659.5_2_22:30769731-30772445:+|nuORF	ENST00000405659.5_2_22:30769731-30772445:+|nuORF	ENST00000405659.5_2_22:30769731-30772445:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	470.7214050292969	2	470.722164	939.429775	0.19645	9.2473E-05	-0.76519	-0.00036019	-0.56875	-0.00026772	470.7215780882078	17.897	0.20905	17.541	17.441	17.65	-0.35647					7	3	3	0	0	0	0.70367	1	6154	6154		20.454	1.1966	1	6979100			23084	7712	14498	14584	22204	22204					-0.04236272758578252
PAGARLRA	8	Unmodified	_PAGARLRA_					0	0	0		ENSG00000144120|ENST00000272521|TMEM177;ENST00000474763.5_1_7:139478056-139487174:+|nuORF;ENST00000425687.5_1_7:139478056-139482520:+|nuORF	ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	MULTI-MSMS	HCT116MG_D190212_S2	2	811.4898071289062	1	811.489696	810.48242	1.1269	0.00091445	-0.6901	-0.00056001	0.43678	0.00035444	811.4889277815961	48.151	0.45616	48.018	47.841	48.297	-0.13281					13	8	2	0	0	0	0.8029	1	18391	18391		11.114	0	1	175850000			23085	3852	14499	14585	22205	22205					0.06959774885547176
PAGEESGFLSF	11	Unmodified	_PAGEESGFLSF_					0	0	0		nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MSMS	HCT116MG_D190212_S4	4	570.762451171875	2	570.764029	1139.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.477	1	15.315	14.815	15.815	-0.16173								0	0	0	0.95113	1	4992	4992		5.7319	0	1				23086	3479	14500	14586	22206	22206					-0.05067161381521146
PAGGALQHS	9	Unmodified	_PAGGALQHS_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	HCT116MG_D190212_S3	3	419.2136535644531	2	419.214309	836.414065	0.012635	5.2969E-06	-0.49136	-0.00020598	-0.47872	-0.00020069	419.21395123218866	16.178	0.25994	16.263	16.081	16.341	0.085424					7	4	2	0	0	0	0.1754	1	5377	5377		43.858	2.0187	1	951700			23087	5857	14501	14587	22207	22207					-0.010685144849617245
PAGGDRSS	8	Unmodified	_PAGGDRSS_					0	0	0		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	746.343994140625	1	746.342757	745.335481	0.63164	0.00047142	0.38331	0.00028608	1.0149	0.0007575	746.3427617302161	36.86	0.7818	36.86	36.312	37.094	0					33	14	3	0	0	0	0.8506	1	13592	13592		5.2307	0	1	95997000			23088	8561	14502	14588	22208	22208					-0.04737366790038777
PAGGSRSSSR	10	Unmodified	_PAGGSRSSSR_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MSMS	HCT116MG_D190212_S2	2	481.34185791015625	2	481.244129	960.473705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.976	1	48.822	48.322	49.322	-0.15405								0	0	0	0.90475	1	18729	18729		14.838	0.25658	1				23089	851	14503	14589	22209	22209					-0.00811243541568274
PAGGSTGFS	9	Unmodified	_PAGGSTGFS_					0	0	0		ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7|ENAH;ENAH-TMEM63A|1|fusion;ENAH|p.Q196Dfs*57|1|0.22|ENSG00000154380|chr1:225519414-225519415|-/TC|frameshift_variant;nc|ENSG00000154380|Q8N8S7-3|ENAH	ENSG00000154380|ENST00000366843|ENAH	ENSG00000154380|ENST00000366843|ENAH	MULTI-MSMS	HCT116MG_D190212_S3	3	780.35205078125	1	780.352259	779.344983	0.67547	0.0005271	0.11811	9.2166E-05	0.79357	0.00061927	780.3523020365647	33.568	1.1761	33.278	33.011	34.188	-0.29013					31	22	2	0	0	0	0.12335	1	12311	12311		53.576	15.424	1	7661500			23090	4218	14504	14590	22210	22210					-0.05351598504523736
PAGGSTGFS	9	Unmodified	_PAGGSTGFS_					0	0	0		ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7|ENAH;ENAH-TMEM63A|1|fusion;ENAH|p.Q196Dfs*57|1|0.22|ENSG00000154380|chr1:225519414-225519415|-/TC|frameshift_variant;nc|ENSG00000154380|Q8N8S7-3|ENAH	ENSG00000154380|ENST00000366843|ENAH	ENSG00000154380|ENST00000366843|ENAH	MULTI-MSMS	HCT116MG_D190212_S4	4	780.3530883789062	1	780.352259	779.344983	1.111	0.00086698	-0.087731	-6.8461E-05	1.0233	0.00079852	780.3520580264732	33.574	1.3017	33.189	32.887	34.189	-0.38426					46	32	2	0	0	0	0.17018	1	12135	12135		44.407	2.3125	1	10274000			23091	4218	14504	14590	22211	22211					-0.05351598504523736
PAGHEVLVIP	10	Unmodified	_PAGHEVLVIP_					0	0	0		ENST00000505914.5_1_5:1323907-1324045:-|nuORF	ENST00000505914.5_1_5:1323907-1324045:-|nuORF	ENST00000505914.5_1_5:1323907-1324045:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	517.36669921875	2	516.297842	1030.58113	0.44174	0.00022807	-0.25228	-0.00013025	0.18947	9.7821E-05	516.2976227425786	48.372	0.50721	48.228	47.982	48.49	-0.1437					22	9	3	0	0	0	0.74117	1	18422	18422		16.942	1.0951	1	203550000			23092	8457	14505	14591	22212	22212					0.06706333339934645
PAGHGGAP	8	Unmodified	_PAGHGGAP_					0	0	0			REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	663.3211059570312	1	663.320899	662.313623	0.77128	0.00051161	-1.671	-0.0011084	-0.89969	-0.00059679	663.319533736523	33.392	0.41228	33.2	32.966	33.378	-0.19297					12	7	2	0	0	0	0.86388	1	12374	12374		2.8892	0	1	106410000	+		23093	15500	14506	14592	22213	22213					-0.031041267479622547
PAGHGGAP	8	Unmodified	_PAGHGGAP_					0	0	0			REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	663.320899	662.313623	0.77128	0.00051161	-1.671	-0.0011084	-0.89969	-0.00059679	663.319533736523	33.392	0.41228	33.2	32.966	33.378	-0.19297	-0.034087	5.1619E-05	NaN	2.8892	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106410000	+		23094	15500	14506	14592							-0.031041267479622547
PAGHGGAP	8	Unmodified	_PAGHGGAP_					0	0	0			REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	663.320899	662.313623	0.78122	0.0005182	-1.7586	-0.0011665	-0.97742	-0.00064834	663.3196629107429	33.558	0.46186	33.268	33.049	33.511	-0.29013	0.034087	-6.5286E-06	NaN	2.8892	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18546000	+		23095	15500	14506	14592							-0.031041267479622547
PAGIILTKVG	10	Unmodified	_PAGIILTKVG_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;NUP98|p.N1328Tfs*89|2|0.22|ENSG00000110713|chr11:3699159-3699159|T/-|frameshift_variant	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MSMS	HCT116MG_D190212_S2	2	485.13226318359375	2	484.810585	967.606617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.041	1	47.908	47.408	48.408	-0.13281								0	0	0	0.91279	1	18342	18342		13.042	2.2185	1				23096	2256	14507	14593	22214	22214					0.12151807862380792
PAGITVFINIW	11	Unmodified	_PAGITVFINIW_					0	0	0		ENSG00000186160|ENST00000334194|CYP4Z1	ENSG00000186160|ENST00000334194|CYP4Z1	ENSG00000186160|ENST00000334194|CYP4Z1	MSMS	HCT116MG_D190212_S2	2	615.8477172851562	2	615.847699	1229.68084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.832	1	36.718	36.218	37.218	-0.11478								0	0	0	0.94924	1	13786	13786		6.7232	0	1				23097	5870	14508	14594	22215	22215					0.075191509538854
PAGKAPQYH	9	Unmodified	_PAGKAPQYH_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;SLC4A7|p.S1176Kfs*13|1|0.68|ENSG00000033867|chr3:27383191-27383192|-/C|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;SLC4A7|p.L1003Wfs*11|1|0.39|ENSG00000033867|chr3:27394600-27394600|A/-|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;ENST00000454389.5_2_3:27462227-27462263:-|nuORF	ENSG00000033867|ENST00000454389|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	MSMS	HCT116MG_D190212_S1	1	484.7514343261719	2	484.751059	967.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.33	1	49.33	48.83	49.83	0								0	0	0	0.76641	1	18794	18794		13.508	0.97634	1				23098	976	14509	14595	22216	22216					0.0025203395750850177
PAGLLFQQP	9	Unmodified	_PAGLLFQQP_					0	0	0		nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-2|TACC2	nc|ENSG00000138162|O95359-6|TACC2	nc|ENSG00000138162|O95359-6|TACC2	MSMS	HCT116MG_D190212_S4	4	485.76031494140625	2	485.77146	969.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.897	1	27.575	27.075	28.075	-0.32157								0	0	0	0.32721	1	10008	10008		38.151	7.5146	1				23099	3537	14510	14596	22217	22217					0.0423837527713431
PAGLPGVP	8	Unmodified	_PAGLPGVP_					0	0	0		COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	707.4091186523438	1	707.408652	706.401375	0.52415	0.00037079	0.20948	0.00014819	0.73364	0.00051898	707.4085934444944	38.208	0.32098	37.825	37.681	38.002	-0.38283					10	6	2	0	0	0	0.11368	2	14001	13996;14001		91.927	14.731	1	4791400			23100	512	14511	14597	22218;22219	22219					0.03643074122805956
PAGLSGQVGL	10	Unmodified	_PAGLSGQVGL_					0	0	0			REV__ENSG00000183760|ENST00000331256|ACP7	REV__ENSG00000183760|ENST00000331256|ACP7	MSMS	HCT116MG_D190212_S3	3	449.75323486328125	2	449.753267	897.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.827	1	22.808	22.308	23.308	-0.018869								0	0	0	0.92917	1	8029	8029		9.3831	0	1		+		23101	13778	14512	14598	22220	22220					0.03913498380427427
PAGMPGCP	8	Unmodified	_PAGMPGCP_					0	0	0			REV__ENST00000490967.5_1_22:31503065-31503518:-|nuORF	REV__ENST00000490967.5_1_22:31503065-31503518:-|nuORF	MSMS	HCT116MG_D190212_S3	3	365.15704345703125	2	365.15656	728.298567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.592	1	27.404	26.904	27.904	-0.18847								0	0	0	0.8837	1	9950	9950		2.8892	0	1		+		23102	16035	14513	14599	22221	22221					-0.07645077931817923
PAGPAGPR	8	Unmodified	_PAGPAGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MSMS	HCT116MG_D190212_S2	2	361.7005920410156	2	361.700838	721.387122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.537	1	16.195	15.695	16.695	-0.34183								0	0	0	0.048313	1	5571	5571		93.883	15.439	1				23103	4715	14514	14600	22222	22222					0.01528421694501958
PAGPEGRP	8	Unmodified	_PAGPEGRP_					0	0	0			REV__ENST00000505991.1_1_4:25378950-25379022:+|nuORF	REV__ENST00000505991.1_1_4:25378950-25379022:+|nuORF	MSMS	HCT116MG_D190212_S2	2	390.5399169921875	2	390.703577	779.392602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.11	1	15.775	15.275	16.275	-0.33451								0	0	0	0.091106	1	5399	5399		85.272	23.915	1		+		23104	15722	14515	14601	22223	22223					-0.005918995136653393
PAGPEGRP	8	Unmodified	_PAGPEGRP_					0	0	0			REV__ENST00000505991.1_1_4:25378950-25379022:+|nuORF	REV__ENST00000505991.1_1_4:25378950-25379022:+|nuORF	MSMS	HCT116MG_D190212_S3	3	390.7034912109375	2	390.703577	779.392602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.065	1	16.15	15.65	16.65	0.085424								0	0	0	0.44863	1	5304	5304		46.021	6.0636	1		+		23105	15722	14515	14601	22224	22224					-0.005918995136653393
PAGPKRVM	8	Unmodified	_PAGPKRVM_					0	0	0			REV__REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV__REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	428.2490234375	2	428.247098	854.479642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.949	1	31.574	31.074	32.074	-0.37529								0	0	0	0.8837	1	11616	11616		2.8892	0.31174	1		+		23106	17467	14516	14602	22225	22225					0.046581834364019414
PAGPLQTPAQ	10	Unmodified	_PAGPLQTPAQ_					0	0	0		nc|ENSG00000187260|Q86TI4-2|WDR86	nc|ENSG00000187260|Q86TI4-2|WDR86	nc|ENSG00000187260|Q86TI4-2|WDR86	MULTI-SECPEP	HCT116MG_D190212_S2	2	490.7435302734375	2	490.263999	978.513445	0.19976	9.7936E-05	-0.32045	-0.00015711	-0.12069	-5.9169E-05	490.2637937986269	16.397	0.26127	16.055	15.839	16.1	-0.34183					6	4	2	0	0	0	0.30812	1	5452	5452		3.9444	1.6417	1	1243000			23107	9585	14517	14603	22226	22226					0.023328834091216777
PAGPPNSP	8	Unmodified	_PAGPPNSP_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	HCT116MG_D190212_S2	2	369.2183532714844	2	368.684853	735.355153	-0.30076	-0.00011089	-0.021796	-8.036E-06	-0.32256	-0.00011892	368.68482291004915	20.114	0.31171	19.739	19.558	19.869	-0.37503					6	5	2	0	0	0	0.3238	1	7052	7052		2.5775	0	1	1879800	+		23108	13043	14518	14604	22227	22227					-0.02310990779290023
PAGPQGPR	8	Unmodified	_PAGPQGPR_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	390.2113037109375	2	390.211569	778.408586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.268	1	16.268	15.768	16.768	0								0	0	0	0.8217	1	5463	5463		20.871	0	1				23109	513	14519	14605	22228	22228					0.010518067232396788
PAGPQGPR	8	Unmodified	_PAGPQGPR_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	390.2113037109375	2	390.211569	778.408586	0.039217	1.5303E-05	0.10996	4.2906E-05	0.14917	5.8209E-05	390.2115006634808	16.52	0.73032	16.178	15.682	16.412	-0.34183					23	13	2	0	0	0	0.037774	1	5472	5472		137.59	8.3847	1	5827100			23110	513	14519	14605	22229	22229					0.010518067232396788
PAGPRGERGP	10	Unmodified	_PAGPRGERGP_					0	0	0		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1;ENST00000488128.6_1_1:32121928-32135507:-|nuORF;ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF;ENST00000488298.5_1_7:94043536-94045869:+|nuORF	nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-SECPEP	HCT116MG_D190212_S2	2	497.9143981933594	2	497.264865	992.515176	0.29314	0.00014577	-0.97832	-0.00048649	-0.68518	-0.00034072	497.26463544019293	16.207	0.20908	15.872	15.741	15.951	-0.33451					6	3	2	0	0	0	0.29442	1	5411	5411		6.2058	0	1	2594900			23111	4715;1447	14520	14606	22230	22230					0.018619372177681726
PAGPTHVGH	9	Unmodified	_PAGPTHVGH_					0	0	0			REV__ENST00000446197.7_1_14:24584126-24584261:+|nuORF	REV__ENST00000446197.7_1_14:24584126-24584261:+|nuORF	MSMS	HCT116MG_D190212_S4	4	436.72247314453125	2	436.722301	871.43005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.028	1	30.664	30.164	31.164	-0.36416								0	0	0	0.7676	1	11244	11244		9.3474	0	1		+		23112	15673	14521	14607	22231	22231					-0.010808082480480152
PAGPWHFGRL	10	Unmodified	_PAGPWHFGRL_					0	0	0			REV__ENSG00000240204|ENST00000462322|SMKR1	REV__ENSG00000240204|ENST00000462322|SMKR1	MSMS	HCT116MG_D190212_S2	2	569.3018798828125	2	569.30125	1136.58795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.995	1	33.82	33.32	34.32	-0.17512								0	0	0	0.93576	1	12633	12633		7.9102	0	1		+		23113	14349	14522	14608	22232	22232					0.02511691011181938
PAGQAASGGPQ	11	Unmodified	_PAGQAASGGPQ_					0	0	0			REV__nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	REV__nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	MULTI-MSMS	HCT116MG_D190212_S4	4	470.72784423828125	2	470.727781	939.441008	-0.27718	-0.00013048	0.33184	0.0001562	0.054654	2.5727E-05	470.7279607210527	16.949	0.88065	16.783	16.556	17.436	-0.16664					24	16	3	0	0	0	0.62391	1	5565	5565		32.786	0.4802	1	3650700	+		23114	17310	14523	14609	22233	22233					-0.03113450664420725
PAGQGVHR	8	Unmodified	_PAGQGVHR_					0	0	0		ENST00000596586.5_3_19:46283105-46288963:-|nuORF	ENST00000596586.5_3_19:46283105-46288963:-|nuORF	ENST00000596586.5_3_19:46283105-46288963:-|nuORF	MSMS	HCT116MG_D190212_S3	3	411.22222900390625	2	411.222469	820.430384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.104	1	40.802	40.302	41.302	-0.30185								0	0	0	0.8837	1	15281	15281		4.756	1.8668	1				23115	9065	14524	14610	22234	22234					0.012986114718046338
PAGRESKPQEL	11	Unmodified	_PAGRESKPQEL_					0	0	0			REV__SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	REV__SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	606.7291870117188	2	606.322576	1210.6306	0.51211	0.0003105	-0.4473	-0.00027121	0.064807	3.9294E-05	606.3226650751395	18.219	0.20874	18.219	18.089	18.298	0					5	3	2	0	0	0	0.36452	1	6273	6273		1.4819	0	1	5129900	+		23116	10773	14525	14611	22235	22235					0.033709965581238066
PAGRGPPA	8	Unmodified	_PAGRGPPA_					0	0	0		ENST00000358024.7_1_1:205197673-205197814:+|nuORF	ENST00000358024.7_1_1:205197673-205197814:+|nuORF	ENST00000358024.7_1_1:205197673-205197814:+|nuORF	MSMS	HCT116MG_D190212_S1	1	361.700439453125	2	361.700838	721.387122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.261	1	16.261	15.761	16.761	0								0	0	0	0.68119	1	5460	5460		32.117	0	1				23117	7317	14526	14612	22236	22236					0.01528421694501958
PAGRKLKL	8	Unmodified	_PAGRKLKL_					0	0	0		ENSG00000198354|ENST00000360028|DCAF12L2	ENSG00000198354|ENST00000360028|DCAF12L2	ENSG00000198354|ENST00000360028|DCAF12L2	MULTI-MSMS	HCT116MG_D190212_S3	3	882.5859375	1	882.588348	881.581071	1.0147	0.00089559	-0.7648	-0.00067501	0.24993	0.00022059	882.5854129673494	60.299	3.5211	60.047	58.008	61.529	-0.25233					164	67	3	0	0	0	0.87576	1	22375	22375		0.79363	0	1	21512000			23118	6225	14527	14613	22237	22237					0.13554378130595524
PAGRRQARRL	10	Unmodified	_PAGRRQARRL_					0	0	0		ENST00000327705.13_1_5:180486290-180486374:+|nuORF	ENST00000327705.13_1_5:180486290-180486374:+|nuORF	ENST00000327705.13_1_5:180486290-180486374:+|nuORF	MSMS	HCT116MG_D190212_S3	3	394.222412109375	3	394.242645	1179.70611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.555	1	58.285	57.785	58.785	-0.26932								0	0	0	0.96291	1	22277	22277		0.77653	0	1				23119	7145	14528	14614	22238	22238					0.12344063319710585
PAGSAPGL	8	Unmodified	_PAGSAPGL_					0	0	0		nc|ENSG00000197037|Q6NSZ9-3|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENSG00000197037|ENST00000394152|ZSCAN25	nc|ENSG00000197037|Q6NSZ9-3|ZSCAN25	nc|ENSG00000197037|Q6NSZ9-3|ZSCAN25	MULTI-MSMS	HCT116MG_D190212_S3	3	671.3729248046875	1	669.356616	668.34934	1.0341	0.00069218	1.9556	0.001309	2.9897	0.0020012	669.3563726269782	28.699	0.57272	28.493	28.229	28.802	-0.20593					20	10	3	0	0	0	0.1757	1	10372	10372		78.445	11.409	1	15592000			23120	6113	14529	14615	22239	22239					0.0018991070904803564
PAGSHCSRTAL	11	Unmodified	_PAGSHCSRTAL_					0	0	0		ENST00000339431.8_1_7:102553560-102574338:+|nuORF	ENST00000339431.8_1_7:102553560-102574338:+|nuORF	ENST00000339431.8_1_7:102553560-102574338:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	550.2169189453125	2	550.26929	1098.52403	0.45358	0.00024959	-1.4609	-0.00080392	-1.0074	-0.00055432	550.2682537444653	50.028	0.18976	49.669	49.551	49.741	-0.35878					5	3	2	0	0	0	0.36452	1	18546	18546		1.4819	0	1	2152900			23121	7205	14530	14616	22240	22240					-0.02129457208070562
PAGVKQKCLR	10	Unmodified	_PAGVKQKCLR_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000492048.5_1_18:6942080-6955548:-|nuORF;ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MSMS	HCT116MG_D190212_S4	4	550.3255004882812	2	550.323868	1098.63318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.445	1	44.071	43.571	44.571	-0.37373								0	0	0	0.96377	1	16374	16374		1.6526	0.17072	1				23122	1803	14531	14617	22241	22241					0.08781173482043414
PAGVYVHA	8	Unmodified	_PAGVYVHA_					0	0	0			REV__UBE2K|p.A153V|1|0.3|ENSG00000078140|chr4:39777740-39777740|C/T|missense_variant	REV__UBE2K|p.A153V|1|0.3|ENSG00000078140|chr4:39777740-39777740|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	813.4263916015625	1	813.425365	812.418088	0.92705	0.00075408	-0.10953	-8.9094E-05	0.81752	0.00066499	813.4248764828948	36.691	0.20641	36.576	36.499	36.705	-0.11478					5	3	2	0	0	0	0.8029	1	13766	13766		11.114	0.93107	1	11641000	+		23123	18035	14532	14618	22242	22242					0.004375750087547203
PAHKLKKHLNL	11	Unmodified	_PAHKLKKHLNL_					0	0	0			REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	MSMS	HCT116MG_D190212_S1	1	433.6051025390625	3	433.606701	1297.79827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.684	1	54.684	54.184	55.184	0								0	0	0	0.95976	1	20977	20977		1.2148	0.70888	1		+		23124	16162	14533	14619	22243	22243					0.16128728613375642
PAIDPAPFY	9	Unmodified	_PAIDPAPFY_					0	0	0			REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	495.750732421875	2	495.750193	989.485833	0.45256	0.00022436	0.88534	0.00043891	1.3379	0.00066326	495.7505621332902	52.56	0.36174	52.373	52.193	52.555	-0.18725					9	6	2	0	0	0	0.28709	1	20225	20225		32.117	5.2333	1	11970000	+		23125	16689	14534	14620	22244	22244					-0.009330198511065646
PAIEYTYRR	9	Unmodified	_PAIEYTYRR_					0	0	0			REV__ENST00000424845.5_1_12:53564215-53567250:-|nuORF	REV__ENST00000424845.5_1_12:53564215-53567250:-|nuORF	MSMS	HCT116MG_D190212_S1	1	584.8084716796875	2	584.809105	1167.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.548	1	49.548	49.048	50.048	0								0	0	0	0.76849	1	18883	18883		6.2058	0	1		+		23126	15541	14535	14621	22245	22245					0.02655932737548028
PAIQVRRK	8	Unmodified	_PAIQVRRK_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A;KIF13A|p.V1116Sfs*4|2|0.23|ENSG00000137177|chr6:17787791-17787792|-/T|frameshift_variant;KIF13A|p.V1116Sfs*23|1|0.39|ENSG00000137177|chr6:17787792-17787792|T/-|frameshift_variant;KIF13A|p.K775Nfs*30|1|0.35|ENSG00000137177|chr6:17804490-17804490|T/-|frameshift_variant;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant;ENSG00000197892|ENST00000524189|KIF13B	nc|ENSG00000137177|Q9H1H9-3|KIF13A;ENSG00000197892|ENST00000524189|KIF13B	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	HCT116MG_D190212_S1	1	484.31121826171875	2	484.311618	966.608683	0.12771	6.1853E-05	0.21619	0.0001047	0.3439	0.00016656	484.3116253432719	60.774	2.1701	60.774	60.595	62.765	0					70	41	2	0	0	0	0.8506	1	23442	23442		5.2307	0	1	177110000			23127	3466;6183	14536	14622	22246	22246					0.12404281390843153
PAIQVRRK	8	Unmodified	_PAIQVRRK_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A;KIF13A|p.V1116Sfs*4|2|0.23|ENSG00000137177|chr6:17787791-17787792|-/T|frameshift_variant;KIF13A|p.V1116Sfs*23|1|0.39|ENSG00000137177|chr6:17787792-17787792|T/-|frameshift_variant;KIF13A|p.K775Nfs*30|1|0.35|ENSG00000137177|chr6:17804490-17804490|T/-|frameshift_variant;KIF13B|p.K1288Rfs*13|1|0.34|ENSG00000197892|chr8:29113530-29113530|T/-|frameshift_variant;ENSG00000197892|ENST00000524189|KIF13B	nc|ENSG00000137177|Q9H1H9-3|KIF13A;ENSG00000197892|ENST00000524189|KIF13B	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	484.311618	966.608683	0.23186	0.00011229	0.12439	6.0245E-05	0.35626	0.00017254	484.31167267374	60.804	0.98602	60.656	60.527	61.513	-0.14852	-0.059108	-1.1634E-05	NaN	5.2307	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36747000			23128	3466;6183	14536	14622							0.12404281390843153
PAISDPFYGP	10	Unmodified	_PAISDPFYGP_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164;nc|ENSG00000157600|Q5U3C3-2|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MULTI-SECPEP	HCT116MG_D190212_S2	2	531.7356567382812	2	532.258382	1062.50221	0.37335	0.00019872	0.54231	0.00028865	0.91566	0.00048737	532.2589889367266	21.37	0.20725	20.987	20.91	21.117	-0.38288					5	3	2	0	0	0	0.3029	1	7493	7493		6.7232	0	1	2924900			23129	4334	14537	14623	22247	22247					-0.026539386850117808
PAKAKKSRR	9	Unmodified	_PAKAKKSRR_					0	0	0			REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MSMS	HCT116MG_D190212_S2	2	521.7689819335938	2	521.335624	1040.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.06	1	49.896	49.396	50.396	-0.16369								0	0	0	0.76718	1	19177	19177		10.824	1.4408	1		+		23130	10866	14538	14624	22248	22248					0.13799355310879946
PAKARSQWLD	10	Unmodified	_PAKARSQWLD_					0	0	0			REV__ENST00000487587.2_1_20:43603507-43603681:+|nuORF	REV__ENST00000487587.2_1_20:43603507-43603681:+|nuORF	MSMS	HCT116MG_D190212_S3	3	586.3157958984375	2	586.314554	1170.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.19	1	49.874	49.374	50.374	-0.31525								0	0	0	0.94107	1	18920	18920		6.7232	0	1		+		23131	16005	14539	14625	22249	22249					0.036073351118375285
PAKDLTFLL	9	Unmodified	_PAKDLTFLL_					0	0	0		ENST00000540266.5_1_12:26383966-26384053:+|nuORF	ENST00000540266.5_1_12:26383966-26384053:+|nuORF	ENST00000540266.5_1_12:26383966-26384053:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	509.4689025878906	2	509.302593	1016.59063	0.56624	0.00028839	1.1656	0.00059367	1.7319	0.00088205	509.30378674418444	48.379	0.71126	48.235	47.728	48.439	-0.1437					21	13	2	0	0	0	0.33687	1	18551	18551		26.884	2.8631	1	30510000			23132	8688	14540	14626	22250	22250					0.08300101625445677
PAKEQRQTP	9	Unmodified	_PAKEQRQTP_					0	0	0		nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14	nc|ENSG00000087269|P78316-2|NOP14	nc|ENSG00000087269|P78316-2|NOP14	MSMS	HCT116MG_D190212_S2	2	527.7857055664062	2	527.78563	1053.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.818	1	14.499	13.999	14.999	-0.31952								0	0	0	0.35515	1	4879	4879		36.127	9.2434	1				23133	1483	14541	14627	22251	22251					0.03207073186422349
PAKETEEPR	9	Unmodified	_PAKETEEPR_					0	0	0			REV__ENSG00000116254|ENST00000262450|CHD5	REV__ENSG00000116254|ENST00000262450|CHD5	MSMS	HCT116MG_D190212_S3	3	529.1224365234375	2	528.769645	1055.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.086	1	49.771	49.271	50.271	-0.31525								0	0	0	0.76694	1	18878	18878		11.64	0.81637	1		+		23134	10171	14542	14628	22252	22252					-0.0008033928741042473
PAKGEQHLYWH	11	Unmodified	_PAKGEQHLYWH_					0	0	0			REV__nc|ENSG00000211701|A0A0A0MS02|TRGV1	REV__nc|ENSG00000211701|A0A0A0MS02|TRGV1	MSMS	HCT116MG_D190212_S3	3	683.3361206054688	2	683.338561	1364.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.316	1	24.246	23.746	24.746	-0.070719								0	0	0	0.9387	1	8629	8629		12.241	2.8575	1		+		23135	17280	14543	14629	22253	22253					-0.0051759096809291805
PAKGRLRSTVP	11	Unmodified	_PAKGRLRSTVP_					0	0	0			REV__nc|ENSG00000204183|Q5U4N7|GDF5-AS1	REV__nc|ENSG00000204183|Q5U4N7|GDF5-AS1	MSMS	HCT116MG_D190212_S4	4	591.3598022460938	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.098	1	52.763	52.263	53.263	-0.33473								0	0	0	0.95521	1	19814	19814		3.5965	0	1		+		23136	17267	14544	14630	22254	22254					0.12091589791225488
PAKIITAA	8	Unmodified	_PAKIITAA_					0	0	0		HCFC1|p.V818A|1|0.21|ENSG00000172534|chrX:153956961-153956961|A/G|missense_variant	HCFC1|p.V818A|1|0.21|ENSG00000172534|chrX:153956961-153956961|A/G|missense_variant	HCFC1|p.V818A|1|0.21|ENSG00000172534|chrX:153956961-153956961|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	392.7486572265625	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.004	1	54.686	54.186	55.186	-0.31774								0	0	0	0.8837	1	20583	20583		0.69038	0	1				23137	9205	14545	14631	22255	22255					0.0850360521968696
PAKIVLRRH	9	Unmodified	_PAKIVLRRH_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L;ENST00000482433.1_1_19:2216201-2220604:+|nuORF	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MSMS	HCT116MG_D190212_S1	1	545.3527221679688	2	545.353817	1088.69308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.797	1	49.797	49.297	50.297	0								0	0	0	0.7689	1	18984	18984		4.756	0.42677	1				23138	1963	14546	14632	22256	22256					0.15228232207596193
PAKKFRWRTVV	11	Unmodified	_PAKKFRWRTVV_					0	0	0			REV__ENST00000440452.5_1_4:728709-759864:+|nuORF	REV__ENST00000440452.5_1_4:728709-759864:+|nuORF	MSMS	HCT116MG_D190212_S3	3	694.422607421875	2	694.419688	1386.82482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.109	1	49.794	49.294	50.294	-0.31525								0	0	0	0.95705	1	18887	18887		5.7319	2.1354	1		+		23139	13851	14547	14633	22257	22257					0.1468841750465799
PAKKKEEPL	9	Unmodified	_PAKKKEEPL_					0	0	0			REV__ENSG00000171450|ENST00000302625|CDK5R2	REV__ENSG00000171450|ENST00000302625|CDK5R2	MULTI-SECPEP	HCT116MG_D190212_S2	2	520.2786865234375	2	520.310949	1038.60735	0.30053	0.00015637	0.65736	0.00034203	0.95789	0.0004984	520.3112884227963	51.238	0.46522	51.059	50.81	51.275	-0.17868					15	8	2	0	0	0	0.24622	1	19739	19739		16.942	6.8684	1	19533000	+		23140	13344	14548	14634	22258	22258					0.08958602511415847
PAKKKKKIRL	10	Unmodified	_PAKKKKKIRL_					0	0	0		ENST00000466133.1_1_3:159819159-159819552:+|nuORF	ENST00000466133.1_1_3:159819159-159819552:+|nuORF	ENST00000466133.1_1_3:159819159-159819552:+|nuORF	MSMS	HCT116MG_D190212_S2	2	605.4319458007812	2	605.429525	1208.8445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.025	1	32.814	32.314	33.314	-0.21135								0	0	0	0.95351	1	12240	12240		3.9444	3.4861	1				23141	8104	14549	14635	22259	22259					0.24842793515449557
PAKKKKQRRQ	10	Unmodified	_PAKKKKQRRQ_					0	0	0		ENSG00000069011|ENST00000265340|PITX1	ENSG00000069011|ENST00000265340|PITX1	ENSG00000069011|ENST00000265340|PITX1	MSMS	HCT116MG_D190212_S4	4	423.2750549316406	3	423.273834	1266.79967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.506	1	55.194	54.694	55.694	-0.312								0	0	0	0.96804	1	20785	20785		0.69767	0	1				23142	1211	14550	14636	22260	22260					0.17694362702127364
PAKKKMKLRG	10	Unmodified	_PAKKKMKLRG_					0	0	0		nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant;SIN3B|p.F776Lfs*21|1|0.31|ENSG00000127511|chr19:16869880-16869880|T/-|frameshift_variant;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182-3|SIN3B	nc|ENSG00000127511|O75182-3|SIN3B	MSMS	HCT116MG_D190212_S3	3	578.8703002929688	2	578.870985	1155.72742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.807	1	49.491	48.991	49.991	-0.31525								0	0	0	0.92607	1	18765	18765		10.074	6.1295	1				23143	2967	14551	14637	22261	22261					0.15578312304160136
PAKKPYNKIVS	11	Unmodified	_PAKKPYNKIVS_					0	0	0		nc|ENSG00000196482|P62508-4|ESRRG;nc|ENSG00000196482|P62508-2|ESRRG;ENSG00000196482|ENST00000408911|ESRRG	nc|ENSG00000196482|P62508-4|ESRRG	nc|ENSG00000196482|P62508-4|ESRRG	MSMS	HCT116MG_D190212_S3	3	622.870849609375	2	622.871705	1243.72886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.185	1	53.885	53.385	54.385	-0.29946								0	0	0	0.95113	1	20526	20526		5.7319	0	1				23144	6075	14552	14638	22262	22262					0.11674224873922867
PAKKSFLRRL	10	Unmodified	_PAKKSFLRRL_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MSMS	HCT116MG_D190212_S2	2	608.0592651367188	2	608.387857	1214.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.65	1	48.506	48.006	49.006	-0.1437								0	0	0	0.92917	1	18594	18594		9.3831	0.63772	1				23145	5363	14553	14639	22263	22263					0.16237057067610294
PAKKSFLRRL	10	Unmodified	_PAKKSFLRRL_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MSMS	HCT116MG_D190212_S2	2	608.3854370117188	2	608.387857	1214.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.324	1	53.135	52.635	53.635	-0.18922								0	0	0	0.95351	1	20504	20504		3.9444	0.3479	1				23146	5363	14553	14639	22264	22264					0.16237057067610294
PAKKSFLRRL	10	Unmodified	_PAKKSFLRRL_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MSMS	HCT116MG_D190212_S3	3	608.3854370117188	2	608.387857	1214.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.735	1	49.419	48.919	49.919	-0.31596								0	0	0	0.94107	1	18737	18737		6.7232	3.1267	1				23147	5363	14553	14639	22265	22265					0.16237057067610294
PAKKSFLRRL	10	Unmodified	_PAKKSFLRRL_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MSMS	HCT116MG_D190212_S3	3	608.3854370117188	2	608.387857	1214.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.522	1	50.208	49.708	50.708	-0.31381								0	0	0	0.94551	1	19053	19053		5.7319	1.7875	1				23148	5363	14553	14639	22266	22266					0.16237057067610294
PAKKSFLRRL	10	Unmodified	_PAKKSFLRRL_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MSMS	HCT116MG_D190212_S3	3	608.385498046875	2	608.387857	1214.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.728	1	51.418	50.918	51.918	-0.30927								0	0	0	0.94107	1	19537	19537		6.7232	2.7788	1				23149	5363	14553	14639	22267	22267					0.16237057067610294
PAKKSFLRRL	10	Unmodified	_PAKKSFLRRL_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MSMS	HCT116MG_D190212_S3	3	608.3854370117188	2	608.387857	1214.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.329	1	52.02	51.52	52.52	-0.3087								0	0	0	0.95507	1	19779	19779		3.5965	0	1				23150	5363	14553	14639	22268	22268					0.16237057067610294
PAKKSFLRRL	10	Unmodified	_PAKKSFLRRL_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MSMS	HCT116MG_D190212_S3	3	608.3854370117188	2	608.387857	1214.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.898	1	52.592	52.092	53.092	-0.30639								0	0	0	0.95351	1	20008	20008		3.9444	0.66309	1				23151	5363	14553	14639	22269	22269					0.16237057067610294
PAKKSRKHAA	10	Unmodified	_PAKKSRKHAA_					0	0	0		ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MSMS	HCT116MG_D190212_S2	2	547.5325317382812	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.201	1	49.047	48.547	49.547	-0.15405								0	0	0	0.94107	1	18823	18823		6.7232	0	1				23152	4801	14554	14640	22270	22270					0.10899051448268438
PAKKSRKHAA	10	Unmodified	_PAKKSRKHAA_					0	0	0		ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MSMS	HCT116MG_D190212_S3	3	547.3316650390625	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.719	1	50.405	49.905	50.905	-0.31381								0	0	0	0.92917	1	19133	19133		9.3831	2.66	1				23153	4801	14554	14640	22271	22271					0.10899051448268438
PAKLLRRRQHF	11	Unmodified	_PAKLLRRRQHF_					0	0	0		ENST00000252804.8_1_2:1636313-1636529:-|nuORF	ENST00000252804.8_1_2:1636313-1636529:-|nuORF	ENST00000252804.8_1_2:1636313-1636529:-|nuORF	MSMS	HCT116MG_D190212_S2	2	474.62493896484375	3	474.624866	1420.85277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.614	1	49.451	48.951	49.951	-0.16369								0	0	0	0.95954	1	18994	18994		1.3296	0.21989	1				23154	6804	14555	14641	22272	22272					0.15917740484769638
PAKQAAEAGP	10	Unmodified	_PAKQAAEAGP_					0	0	0			REV__ENST00000568959.1_3_16:67578315-67579420:+|nuORF	REV__ENST00000568959.1_3_16:67578315-67579420:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	470.24853515625	2	470.248349	938.482145	0.064541	3.035E-05	0.027888	1.3114E-05	0.092429	4.3464E-05	470.24834816024185	18.084	0.62677	17.728	17.597	18.224	-0.35647					16	11	2	0	0	0	0.37752	1	6219	6219		43.772	5.5968	1	7695500	+		23155	16562	14556	14642	22273	22273					0.010443103750390037
PAKRKIDLV	9	Unmodified	_PAKRKIDLV_					0	0	0			REV__ENST00000546663.1_1_12:51863410-51865314:+|nuORF	REV__ENST00000546663.1_1_12:51863410-51865314:+|nuORF	MSMS	HCT116MG_D190212_S3	3	520.332763671875	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.732	1	51.423	50.923	51.923	-0.30927								0	0	0	0.768	1	19539	19539		7.9102	1.187	1		+		23156	10619	14557	14643	22274	22274					0.13718301502262875
PAKRPRLSEPQ	11	Unmodified	_PAKRPRLSEPQ_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MSMS	HCT116MG_D190212_S1	1	639.8665771484375	2	639.867486	1277.72042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.162	1	28.162	27.662	28.662	0								0	0	0	0.94755	1	10249	10249		7.609	0	1				23157	2805	14558	14644	22275	22275					0.09266670957299539
PAKSALRKIRT	11	Unmodified	_PAKSALRKIRT_					0	0	0		ENSG00000174429|ENST00000311955|ABRA	ENSG00000174429|ENST00000311955|ABRA	ENSG00000174429|ENST00000311955|ABRA	MSMS	HCT116MG_D190212_S1	1	620.7542724609375	2	620.896046	1239.77754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.756	1	15.756	15.256	16.256	0								0	0	0	0.95581	1	5257	5257		3.2813	0	1				23158	5330	14559	14645	22276	22276					0.167241382336897
PAKSQPRGKQR	11	Unmodified	_PAKSQPRGKQR_					0	0	0			REV__nc|ENSG00000102858|O60291-4|MGRN1	REV__nc|ENSG00000102858|O60291-4|MGRN1	MSMS	HCT116MG_D190212_S4	4	626.8677978515625	2	626.865277	1251.716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.73	1	50.375	49.875	50.875	-0.35483								0	0	0	0.94864	1	18858	18858		5.2969	2.0156	1		+		23159	11164	14560	14646	22277	22277					0.10021206534406701
PAKSRFWLLQN	11	Unmodified	_PAKSRFWLLQN_					0	0	0			REV__ENST00000455821.1_1_3:193975097-193975331:+|nuORF	REV__ENST00000455821.1_1_3:193975097-193975331:+|nuORF	MSMS	HCT116MG_D190212_S1	1	680.5534057617188	2	680.380229	1358.7459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.674	1	24.674	24.174	25.174	0								0	0	0	0.95273	1	8843	8843		4.897	1.6157	1		+		23160	15743	14561	14647	22278	22278					0.08088145479746345
PAKVAIVI	8	Unmodified	_PAKVAIVI_					0	0	0			REV__ENST00000441743.1_1_22:21622636-21623056:+|nuORF	REV__ENST00000441743.1_1_22:21622636-21623056:+|nuORF	MSMS	HCT116MG_D190212_S1	1	405.7742614746094	2	405.776014	809.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.229	1	58.229	57.729	58.729	0								0	0	0	0.8837	1	22425	22425		0.79363	0	1		+		23161	13218	14562	14648	22279	22279					0.12508768633449563
PAKVFKMRLP	10	Unmodified	_PAKVFKMRLP_					0	0	0		nc|ENSG00000154655|Q8NA19-2|L3MBTL4;L3MBTL4|p.R516Gfs*63|1|0.34|ENSG00000154655|chr18:5969489-5969489|A/-|frameshift_variant;ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4	nc|ENSG00000154655|Q8NA19-2|L3MBTL4	nc|ENSG00000154655|Q8NA19-2|L3MBTL4	MSMS	HCT116MG_D190212_S2	2	396.24359130859375	3	396.242483	1185.70562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.723	1	55.538	55.038	56.038	-0.18565								0	0	0	0.96804	1	21486	21486		0.69767	0	1				23162	4226	14563	14649	22280	22280					0.12019507555623932
PAKWLLFLESR	11	Unmodified	_PAKWLLFLESR_					0	0	0			REV__ENST00000335509.10_1_12:113734025-113734265:+|nuORF	REV__ENST00000335509.10_1_12:113734025-113734265:+|nuORF	MSMS	HCT116MG_D190212_S4	4	680.2835693359375	2	680.392805	1358.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.782	1	15.62	15.12	16.12	-0.16173								0	0	0	0.95581	1	5115	5115		3.2813	0.28607	1		+		23163	14948	14564	14650	22281	22281					0.10602200282301055
PALAADLAA	9	Unmodified	_PALAADLAA_					0	0	0			REV__ENSG00000261594|ENST00000562197|TPBGL	REV__ENSG00000261594|ENST00000562197|TPBGL	MULTI-MSMS	HCT116MG_D190212_S2	2	812.450439453125	1	812.451245	811.443968	0.6545	0.00053175	0.23169	0.00018824	0.88619	0.00071999	812.4513918492119	43.438	0.51598	43.364	43.045	43.561	-0.073376					11	9	2	0	0	0	0.065643	1	16514	16514		67.035	2.799	1	9173800	+		23164	14419	14565	14651	22282	22282					0.030704244603612096
PALALCSS	8	Unmodified	_PALALCSS_					0	0	0		ENST00000570382.1_1_17:79479348-79479814:-|nuORF	ENST00000570382.1_1_17:79479348-79479814:-|nuORF	ENST00000570382.1_1_17:79479348-79479814:-|nuORF	MSMS	HCT116MG_D190212_S3	3	381.1955871582031	2	381.196739	760.378925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.115	1	45.803	45.303	46.303	-0.31237								0	0	0	0.8837	1	17285	17285		2.5775	1.7838	1				23165	8889	14566	14652	22283	22283					-0.010848933371221392
PALIGDKPKWY	11	Unmodified	_PALIGDKPKWY_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MSMS	HCT116MG_D190212_S1	1	644.3598022460938	2	644.358431	1286.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.618	1	41.618	41.118	42.118	0								0	0	0	0.94924	1	15676	15676		6.7232	0	1				23166	2251	14567	14653	22284	22284					0.07042535982600384
PALIILILLRK	11	Unmodified	_PALIILILLRK_					0	0	0		ENSG00000084453|ENST00000683939|SLCO1A2	ENSG00000084453|ENST00000683939|SLCO1A2	ENSG00000084453|ENST00000683939|SLCO1A2	MSMS	HCT116MG_D190212_S2	2	631.9483642578125	2	631.949759	1261.88496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.335	1	49.181	48.681	49.681	-0.15405								0	0	0	0.95954	1	18878	18878		1.3295	1.0225	1				23167	1444	14568	14654	22285	22285					0.2644971511519998
PALKIKMRT	9	Unmodified	_PALKIKMRT_					0	0	0		ENST00000471860.1_1_21:18970975-18971116:-|nuORF	ENST00000471860.1_1_21:18970975-18971116:-|nuORF	ENST00000471860.1_1_21:18970975-18971116:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	528.86962890625	2	529.331162	1056.64777	0.39078	0.00020685	1.1653	0.00061681	1.556	0.00082366	529.3317309027788	14.975	0.15615	14.975	14.858	15.014	0					4	2	2	0	0	0	0.26911	1	4902	4902		2.3027	0	1	902790			23168	8164	14569	14655	22286	22286					0.12171245630202066
PALLRRPLPP	10	Unmodified	_PALLRRPLPP_					0	0	0		ZC3H4|p.V998Cfs*146|1|0.21|ENSG00000130749|chr19:47067277-47067277|G/-|frameshift_variant	ZC3H4|p.V998Cfs*146|1|0.21|ENSG00000130749|chr19:47067277-47067277|G/-|frameshift_variant	ZC3H4|p.V998Cfs*146|1|0.21|ENSG00000130749|chr19:47067277-47067277|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	565.2933959960938	2	565.36385	1128.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.485	1	51.173	50.673	51.673	-0.31166								0	0	0	0.93576	1	19440	19440		7.9102	5.6074	1				23169	18709	14570	14656	22287	22287					0.15393983147532708
PALLVSPVEFY	11	Unmodified	_PALLVSPVEFY_					0	0	0			REV__ACTR10|p.A335Hfs*63|1|0.4|ENSG00000131966|chr14:58232192-58232192|A/-|frameshift_variant	REV__ACTR10|p.A335Hfs*63|1|0.4|ENSG00000131966|chr14:58232192-58232192|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	617.8367919921875	2	617.839539	1233.66453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.818	1	50.504	50.004	51.004	-0.31381								0	0	0	0.94924	1	19173	19173		6.7232	2.3939	1		+		23170	9839	14571	14657	22288	22288					0.05704024997135093
PALRKFVF	8	Unmodified	_PALRKFVF_					0	0	0		ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	MSMS	HCT116MG_D190212_S2	2	489.3017578125	2	489.300188	976.585822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.395	1	49.241	48.741	49.741	-0.15405								0	0	0	0.8837	1	18903	18903		6.3541	0.59368	1				23171	4274	14572	14658	22289	22289					0.0965926227337377
PALWDWDYLDR	11	Unmodified	_PALWDWDYLDR_					0	0	0		nc|ENSG00000145014|Q2T9K0|TMEM44;nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44	nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0|TMEM44	MSMS	HCT116MG_D190212_S1	1	725.0108642578125	2	725.343509	1448.67246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.233	1	15.233	14.733	15.733	0								0	0	0	0.95581	1	5046	5046		3.2813	1.7994	1				23172	9488	14573	14659	22290	22290					-0.033924477533901154
PAMWTEDSGSY	11	Unmodified	_PAMWTEDSGSY_					0	0	0		ENST00000473231.5_1_1:157666813-157667212:-|nuORF;FCRL3|p.R272Gfs*3|6|0.31|ENSG00000160856|chr1:157697170-157697170|T/-|frameshift_variant;FCRL3|p.R272Kfs*16|1|0.31|ENSG00000160856|chr1:157697169-157697170|-/T|frameshift_variant;nc|ENSG00000160856|Q96P31-7|FCRL3;ENSG00000160856|ENST00000368184|FCRL3;nc|ENSG00000160856|Q96P31-3|FCRL3;nc|ENSG00000160856|Q96P31-6|FCRL3	ENST00000473231.5_1_1:157666813-157667212:-|nuORF	ENST00000473231.5_1_1:157666813-157667212:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	622.1803588867188	2	622.250428	1242.4863	0.32773	0.00020393	0.56449	0.00035126	0.89222	0.00055519	622.2506490611515	50.076	0.26004	49.761	49.654	49.914	-0.31524					7	4	2	0	0	0	0.36475	1	18833	18833		6.2058	3.2105	1	3073500			23173	4467	14574	14660	22291	22291					-0.12524012984204091
PANDNVDSIHL	11	Unmodified	_PANDNVDSIHL_					0	0	0			REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-MSMS	HCT116MG_D190212_S4	4	597.7916259765625	2	597.791109	1193.56767	0.60384	0.00036097	0.20295	0.00012132	0.80679	0.00048229	597.7910062056263	16.831	0.51935	16.665	16.4	16.919	-0.16664					21	9	3	0	0	0	0.73364	1	5494	5494		9.3831	0	1	2011800	+		23174	14389	14575	14661	22292	22292					-0.02137569229944347
PANHASHNRLY	11	Unmodified	_PANHASHNRLY_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MSMS	HCT116MG_D190212_S2	2	640.31787109375	2	640.31816	1278.62177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.139	1	34.981	34.481	35.481	-0.15834								0	0	0	0.89672	1	13097	13097		20.415	7.5419	1		+		23175	10896	14576	14662	22293	22293					-0.006399322877086888
PANLHCCCGPS	11	Unmodified	_PANLHCCCGPS_					0	0	0			REV__ENST00000460006.5_1_20:5174924-5175254:+|nuORF	REV__ENST00000460006.5_1_20:5174924-5175254:+|nuORF	MSMS	HCT116MG_D190212_S4	4	551.2156982421875	2	551.217354	1100.42016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.744	1	50.39	49.89	50.89	-0.35483								0	0	0	0.95954	1	18864	18864		1.3295	0.5359	1		+		23176	15768	14577	14663	22294	22294					-0.1260382363161625
PAPADGADP	9	Unmodified	_PAPADGADP_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	HCT116MG_D190212_S3	3	810.3624267578125	1	810.362824	809.355547	0.80523	0.00065253	-0.11681	-9.4662E-05	0.68842	0.00055787	810.3626916081585	20.426	0.83293	20.474	20.103	20.936	0.048107					25	15	2	0	0	0	0.088989	1	7046	7046		60.39	5.616	1	5186800			23177	5905	14578	14664	22295	22295					-0.05675615850088889
PAPADGADP	9	Unmodified	_PAPADGADP_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	810.362824	809.355547	0.93164	0.00075497	-0.15895	-0.00012881	0.77269	0.00062616	810.3625911934927	20.647	1.1949	20.445	20.092	21.287	-0.20133	-0.014378	-2.1513E-05	NaN	60.39	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4944100			23178	5905	14578	14664							-0.05675615850088889
PAPEGPAG	8	Unmodified	_PAPEGPAG_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	HCT116MG_D190212_S2	2	695.3361206054688	1	695.335881	694.328604	0.61452	0.0004273	-0.25063	-0.00017427	0.3639	0.00025303	695.3358195065277	20.429	0.63205	20.05	19.657	20.289	-0.37949					16	11	2	0	0	0	0.23352	1	7138	7138		67.035	0	1	7183600	+		23179	12584	14579	14665	22296	22296					-0.030786796706138375
PAPEGPAG	8	Unmodified	_PAPEGPAG_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	HCT116MG_D190212_S3	3	695.334716796875	1	695.335881	694.328604	0.76847	0.00053434	-0.11669	-8.1139E-05	0.65178	0.00045321	695.3355557422786	20.081	1.0417	20.129	19.426	20.468	0.048107					32	19	2	0	0	0	0.1757	1	6848	6848		78.445	7.5802	1	10960000	+		23180	12584	14579	14665	22297	22297					-0.030786796706138375
PAPEGPAG	8	Unmodified	_PAPEGPAG_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	HCT116MG_D190212_S3	3	695.336181640625	1	695.335881	694.328604	0.74421	0.00051748	0.019972	1.3887E-05	0.76418	0.00053136	695.3355823446483	30.995	1.0927	30.735	30.399	31.492	-0.26071					24	20	2	0	0	0	0.21411	2	11263	11261;11263		70.865	0	1	6585200	+		23181	12584	14579	14665	22298;22299	22299					-0.030786796706138375
PAPEGPAG	8	Unmodified	_PAPEGPAG_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-SECPEP	HCT116MG_D190212_S3	3	694.82373046875	1	695.335881	694.328604	0.74421	0.00051748	0.019972	1.3887E-05	0.76418	0.00053136	695.3355823446483	30.995	1.0927	30.735	30.399	31.492	-0.26071					24	20	2	0	0	0	0.18695	1	11259	11259		59.795	0	1	6585200	+		23182	12584	14579	14665	22300	22300					-0.030786796706138375
PAPEGPAG	8	Unmodified	_PAPEGPAG_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	HCT116MG_D190212_S4	4	695.3358154296875	1	695.335881	694.328604	0.73756	0.00051285	-0.4462	-0.00031026	0.29137	0.0002026	695.3355635725175	20.23	1.03	20.029	19.374	20.404	-0.20133					34	19	3	0	0	0	0.1757	1	6859	6859		78.445	7.5802	1	6611700	+		23183	12584	14579	14665	22301	22301					-0.030786796706138375
PAPEGPAG	8	Unmodified	_PAPEGPAG_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	HCT116MG_D190212_S4	4	695.3363647460938	1	695.335881	694.328604	0.67435	0.0004689	0.066292	4.6095E-05	0.74064	0.00051499	695.335901435699	30.984	0.93641	30.62	30.249	31.186	-0.36416					31	20	2	0	0	0	0.47906	1	11143	11143		42.968	0	1	7168700	+		23184	12584	14579	14665	22302	22302					-0.030786796706138375
PAPEGPAG	8	Unmodified	_PAPEGPAG_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	695.335881	694.328604	0.61452	0.0004273	-0.25063	-0.00017427	0.3639	0.00025303	695.3358195065277	20.429	0.63205	20.05	19.657	20.289	-0.37949	-0.019727	2.7919E-06	NaN	78.445	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7183600	+		23185	12584	14579	14665							-0.030786796706138375
PAPEGPAG	8	Unmodified	_PAPEGPAG_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	695.335881	694.328604	0.76847	0.00053434	-0.11669	-8.1139E-05	0.65178	0.00045321	695.3355557422786	20.081	1.0417	20.129	19.426	20.468	0.048107	0.05996	9.5924E-05	NaN	78.445	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10960000	+		23186	12584	14579	14665							-0.030786796706138375
PAPGERDGPAG	11	Unmodified	_PAPGERDGPAG_					0	0	0			REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF	REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	512.7617797851562	2	512.246338	1022.47812	0.28099	0.00014394	0.30362	0.00015553	0.58461	0.00029947	512.2464225088247	17.186	1.3561	16.837	16.248	17.604	-0.34933					43	25	3	0	0	0	0.27685	1	5856	5856		43.772	8.8403	1	14245000	+		23187	16672	14580	14666	22303	22303					-0.032217791186667455
PAPGERDGPAG	11	Unmodified	_PAPGERDGPAG_					0	0	0			REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF	REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2464599609375	2	512.246338	1022.47812	0.10586	5.4226E-05	0.20477	0.00010489	0.31063	0.00015912	512.2463833300347	16.275	1.561	16.361	15.612	17.174	0.085424					65	29	3	0	0	0	0.34323	2	5434	5210;5434		60.074	16.302	1	15283000	+		23188	16672	14580	14666	22304;22305	22305					-0.032217791186667455
PAPGYPSYQQ	10	Unmodified	_PAPGYPSYQQ_					0	0	0		TIMM17B|p.G120Afs*81|1|0.15|ENSG00000126768|chrX:48893971-48893971|C/-|frameshift_variant;ENST00000466995.5_1_X:48751014-48751375:-|nuORF;ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B	TIMM17B|p.G120Afs*81|1|0.15|ENSG00000126768|chrX:48893971-48893971|C/-|frameshift_variant	TIMM17B|p.G120Afs*81|1|0.15|ENSG00000126768|chrX:48893971-48893971|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	554.2578735351562	2	554.258914	1106.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.565	1	18.641	18.141	19.141	0.076334								0	0	0	0.89062	1	6313	6313		17.113	3.2068	1				23189	2946	14581	14667	22306	22306					-0.045717243161107035
PAPHLGTL	8	Unmodified	_PAPHLGTL_					0	0	0		ENST00000455294.1_1_16:698589-699174:-|nuORF	ENST00000455294.1_1_16:698589-699174:-|nuORF	ENST00000455294.1_1_16:698589-699174:-|nuORF	MSMS	HCT116MG_D190212_S4	4	403.2327880859375	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.71	1	62.461	61.961	62.961	-0.24919								0	0	0	0.8837	1	23679	23679		0.79363	0	1				23190	8016	14582	14668	22307	22307					0.03934148042867491
PAPPGALC	8	Unmodified	_PAPPGALC_					0	0	0			REV__ENSG00000151468|ENST00000378825|CCDC3	REV__ENSG00000151468|ENST00000378825|CCDC3	MSMS	HCT116MG_D190212_S2	2	363.1859130859375	2	363.186174	724.357796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.077	1	19.702	19.202	20.202	-0.37503								0	0	0	0.8837	1	6998	6998		11.114	0	1		+		23191	12602	14583	14669	22308	22308					-0.015408586459898288
PAPPHATP	8	Unmodified	_PAPPHATP_					0	0	0			REV__MUC6|p.E825Rfs*87|1|0.38|ENSG00000184956|chr11:1026401-1026401|G/-|frameshift_variant	REV__MUC6|p.E825Rfs*87|1|0.38|ENSG00000184956|chr11:1026401-1026401|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	394.2069396972656	2	394.208495	786.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.406	1	23.159	22.659	23.659	-0.24775								0	0	0	0.8837	1	8193	8193		6.3541	0	1		+		23192	17044	14584	14670	22309	22309					0.0006928849170435569
PAPPRKTGP	9	Unmodified	_PAPPRKTGP_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;TCOF1|p.S535Qfs*61|1|0.38|ENSG00000070814|chr5:150375448-150375448|C/-|frameshift_variant;ENST00000515035.5_1_5:149754429-149754786:+|nuORF	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S3	3	460.7675476074219	2	460.769252	919.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.477	1	30.227	29.727	30.727	-0.24946								0	0	0	0.66309	1	11103	11103		20.871	6.2895	1				23193	1245	14585	14671	22310	22310					0.06096910854228099
PAPSLKLIPSV	11	Unmodified	_PAPSLKLIPSV_					0	0	0		ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	MSMS	HCT116MG_D190212_S3	3	561.3482666015625	2	561.350074	1120.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.77	1	45.459	44.959	45.959	-0.31094								0	0	0	0.95113	1	17146	17146		5.7319	0.43497	1				23194	5912	14586	14672	22311	22311					0.13008035096640924
PAPSQQSY	8	Unmodified	_PAPSQQSY_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	HCT116MG_D190212_S2	2	439.2065124511719	2	439.20615	876.397747	0.0077717	3.4134E-06	0.25111	0.00011029	0.25888	0.0001137	439.20612207117773	30.904	0.3117	30.637	30.456	30.768	-0.26704					7	5	2	0	0	0	0.76257	1	11397	11397		15.768	2.2603	1	12611000			23195	1358	14587	14673	22312	22312					-0.045396404417147096
PAQGPTHAQNP	11	Unmodified	_PAQGPTHAQNP_					0	0	0			REV__ENSG00000196782|ENST00000509479|MAML3	REV__ENSG00000196782|ENST00000509479|MAML3	MSMS	HCT116MG_D190212_S4	4	559.2781372070312	2	559.272887	1116.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.496	1	22.269	21.769	22.769	-0.22777								0	0	0	0.90489	1	7829	7829		19.362	4.1135	1		+		23196	14046	14588	14674	22313	22313					-0.022384013360351673
PAQLSPGEMEE	11	Unmodified	_PAQLSPGEMEE_					0	0	0		ENSG00000011590|ENST00000392197|ZBTB32	ENSG00000011590|ENST00000392197|ZBTB32	ENSG00000011590|ENST00000392197|ZBTB32	MSMS	HCT116MG_D190212_S2	2	593.7797241210938	2	594.266078	1186.5176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.633	1	50.461	49.961	50.961	-0.1719								0	0	0	0.9387	1	19408	19408		12.241	4.9514	1				23197	899	14589	14675	22314	22314					-0.0681943995009533
PAQRLIEWVDE	11	Unmodified	_PAQRLIEWVDE_					0	0	0			REV__MYBPC3|p.P453Lfs*13|1|0.26|ENSG00000134571|chr11:47342929-47342929|G/-|frameshift_variant	REV__MYBPC3|p.P453Lfs*13|1|0.26|ENSG00000134571|chr11:47342929-47342929|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	452.57000732421875	3	452.569981	1354.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.354	1	49.354	48.854	49.854	0								0	0	0	0.95665	1	18804	18804		2.8433	1.101	1		+		23198	12061	14590	14676	22315	22315					0.024958387636615953
PARNLLLPEP	10	Unmodified	_PARNLLLPEP_					0	0	0			REV__ENST00000502488.1_1_4:106447966-106448143:-|nuORF	REV__ENST00000502488.1_1_4:106447966-106448143:-|nuORF	MSMS	HCT116MG_D190212_S2	2	560.327880859375	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.854	1	34.696	34.196	35.196	-0.15834								0	0	0	0.94107	1	12981	12981		6.7232	0	1		+		23199	16119	14591	14677	22316	22316					0.09021693777026485
PARQPPRRRLL	11	Unmodified	_PARQPPRRRLL_					0	0	0			REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	MSMS	HCT116MG_D190212_S1	1	453.9522399902344	3	453.952983	1358.83712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.213	1	54.213	53.713	54.713	0								0	0	0	0.95705	1	20782	20782		2.6312	0.37851	1		+		23200	17090	14592	14678	22317	22317					0.17205453967744688
PARRRRNPRRP	11	Unmodified	_PARRRRNPRRP_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	478.3749694824219	3	477.959131	1430.85556	0.1764	8.4311E-05	0.015331	7.3278E-06	0.19173	9.1639E-05	477.9590438432348	54.4	1.3576	54.104	53.147	54.504	-0.29587					50	25	3	0	0	0	0.36607	1	20293	20293		0	0	1	7235600			23201	8543	14593	14679	22318	22318					0.15737008662290464
PARRRRNPRRP	11	Unmodified	_PARRRRNPRRP_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	477.26507568359375	3	477.959131	1430.85556	0.52353	0.00025022	-0.11948	-5.7105E-05	0.40405	0.00019312	477.9589775163913	54.44	2.4478	54.116	52.526	54.974	-0.32349					119	46	4	0	0	0	0.36627	1	19866	19866		0	0	1	34304000			23202	8543	14593	14679	22319	22319					0.15737008662290464
PARRRRNPRRP	11	Unmodified	_PARRRRNPRRP_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	477.959131	1430.85556	0.17984	8.5957E-05	0.19492	9.3162E-05	0.37476	0.00017912	477.9591269130362	54.205	2.4142	54.016	52.553	54.967	-0.1894	-0.044115	0.00011023	NaN	0	135	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269920000			23203	8543	14593	14679							0.15737008662290464
PARRWKRVAER	11	Unmodified	_PARRWKRVAER_					0	0	0		ENST00000502574.1_1_15:65134152-65214443:+|nuORF	ENST00000502574.1_1_15:65134152-65214443:+|nuORF	ENST00000502574.1_1_15:65134152-65214443:+|nuORF	MSMS	HCT116MG_D190212_S1	1	712.9179077148438	2	712.920918	1423.82728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.052	1	51.052	50.552	51.552	0								0	0	0	0.95636	1	19495	19495		2.9952	0.26005	1				23204	8427	14594	14680	22320	22320					0.13232265962324163
PARTPTEEGTP	11	Unmodified	_PARTPTEEGTP_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	HCT116MG_D190212_S4	4	578.2857055664062	2	578.28566	1154.55677	0.26253	0.00015182	-0.18618	-0.00010767	0.076348	4.4151E-05	578.2857470422482	18.939	0.31181	18.753	18.557	18.869	-0.18674					13	5	3	0	0	0	0.72139	1	6399	6399		13.906	1.6654	1	2443400			23205	3907	14595	14681	22321	22321					-0.014329716042311702
PARTPTEEGTP	11	Unmodified	_PARTPTEEGTP_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	578.28566	1154.55677	0.44073	0.00025487	0.26342	0.00015233	0.70415	0.0004072	578.2859323058171	18.651	0.31234	18.72	18.51	18.823	0.069159	-0.016546	0.0003535	NaN	13.906	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1920200			23206	3907	14595	14681							-0.014329716042311702
PASGPCARDP	10	Unmodified	_PASGPCARDP_					0	0	0			REV__ENST00000555949.2_1_14:100764518-100772809:-|nuORF	REV__ENST00000555949.2_1_14:100764518-100772809:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	485.724365234375	2	485.724184	969.433814	0.14546	7.0655E-05	-0.11779	-5.7213E-05	0.027673	1.3442E-05	485.72411407143227	15.548	0.78092	15.634	15.144	15.925	0.085423					26	14	3	0	0	0	0.30812	1	4966	4966		7.2892	0	1	4196800	+		23207	16460	14596	14682	22322	22322					-0.05212506536508954
PASHDNLLRLE	11	Unmodified	_PASHDNLLRLE_					0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	MSMS	HCT116MG_D190212_S2	2	632.834228515625	2	632.835851	1263.65715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.896	1	33.716	33.216	34.216	-0.17978								0	0	0	0.94416	1	12593	12593		9.3831	0.63772	1		+		23208	17188	14597	14683	22323	22323					0.0358668544943157
PASLKRAGGT	10	Unmodified	_PASLKRAGGT_					0	0	0		ENST00000452079.5_2_1:3656745-3659715:-|nuORF	ENST00000452079.5_2_1:3656745-3659715:-|nuORF	ENST00000452079.5_2_1:3656745-3659715:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	479.27764892578125	2	479.277441	956.540328	0.15459	7.4093E-05	0.040973	1.9638E-05	0.19557	9.3731E-05	479.27737571230136	45.139	1.7767	45.139	44.25	46.027	0					81	33	3	0	0	0	0.87405	1	16882	16882		4.897	0.141	1	47070000			23209	7991	14598	14684	22324	22324					0.06031992020314192
PASPGPAQ	8	Unmodified	_PASPGPAQ_					0	0	0		ENSG00000186994|ENST00000330915|KANK3;nc|ENSG00000186994|Q6NY19-1|KANK3	ENSG00000186994|ENST00000330915|KANK3	ENSG00000186994|ENST00000330915|KANK3	MULTI-MSMS	HCT116MG_D190212_S4	4	724.3637084960938	1	724.36243	723.355153	0.82619	0.00059846	0.21839	0.00015819	1.0446	0.00075666	724.3624044530145	21.203	0.36345	20.993	20.76	21.123	-0.20959					11	6	2	0	0	0	0.27593	1	7269	7269		61.357	0	1	4165600			23210	5923	14599	14685	22325	22325					-0.017589907792967097
PASQQKYPAT	10	Unmodified	_PASQQKYPAT_					0	0	0			REV__ENST00000398645.6_1_11:67024258-67024378:+|nuORF	REV__ENST00000398645.6_1_11:67024258-67024378:+|nuORF	MSMS	HCT116MG_D190212_S4	4	545.77978515625	2	545.780013	1089.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.684	1	41.307	40.807	41.807	-0.37637								0	0	0	0.90475	1	15295	15295		14.838	0.93222	1		+		23211	15379	14600	14686	22326	22326					0.0042825109228488145
PASSNYQQ	8	Unmodified	_PASSNYQQ_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.I2776Lfs*3|1|0.17|ENSG00000164190|chr5:37064797-37064797|A/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;NIPBL|p.L2220Ffs*3|1|0.21|ENSG00000164190|chr5:37048567-37048568|-/T|frameshift_variant;NIPBL|p.R505Efs*35|1|0.19|ENSG00000164190|chr5:36984687-36984687|A/-|frameshift_variant;NIPBL|p.K603Sfs*11|2|0.29|ENSG00000164190|chr5:36984981-36984981|A/-|frameshift_variant;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.F1423Lfs*15|1|0.43|ENSG00000164190|chr5:37008032-37008032|T/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	HCT116MG_D190212_S3	3	448.2024841308594	2	447.701232	893.38791	0.0766	3.4294E-05	-0.12424	-5.5623E-05	-0.047642	-2.1329E-05	447.70120254210104	23.504	1.6548	23.465	22.262	23.917	-0.03968					51	31	3	0	0	0	0.76189	1	8373	8373		15.847	1.2655	1	5313100			23212	4680	14601	14687	22327	22327					-0.06304828447093769
PASTQWPQVPS	11	Unmodified	_PASTQWPQVPS_					0	0	0			REV__MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant	REV__MS4A10|p.A99Lfs*12|1|0.12|ENSG00000172689|chr11:60791080-60791080|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	600.2997436523438	2	599.29857	1196.58259	0.58699	0.00035178	-2.7447	-0.0016449	-2.1577	-0.0012931	599.2963057497188	28.191	1.5102	27.985	26.875	28.385	-0.20593					54	28	3	0	0	0	0.65047	1	10271	10271		29.841	6.0508	1	7453500	+		23213	13397	14602	14688	22328	22328					-0.00784077361981872
PASTRTSALTP	11	Unmodified	_PASTRTSALTP_					0	0	0			REV__nc|ENSG00000269741|Q9UKQ9-2|KLK9	REV__nc|ENSG00000269741|Q9UKQ9-2|KLK9	MULTI-MSMS	HCT116MG_D190212_S1	1	551.299072265625	2	551.29857	1100.58259	0.48639	0.00026814	-0.023196	-1.2788E-05	0.46319	0.00025536	551.2985279348958	18.409	0.78178	18.409	17.933	18.714	0					33	14	3	0	0	0	0.69345	1	6240	6240		35.612	35.612	1	9142000	+		23214	17316	14603	14689	22329	22329					0.03631922638032847
PASTTRATP	9	Unmodified	_PASTTRATP_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	HCT116MG_D190212_S3	3	451.24432373046875	2	451.240524	900.466495	0.24387	0.00011004	0.29989	0.00013532	0.54376	0.00024537	451.24056459697215	27.471	0.26011	27.302	27.172	27.432	-0.16933					8	4	2	0	0	0	0.39063	1	9861	9861		23.148	9.6405	1	5985900	+		23215	14280	14604	14690	22330	22330					0.012280238579933211
PASVETPLN	9	Unmodified	_PASVETPLN_					0	0	0		ENSG00000154380|ENST00000366843|ENAH;nc|ENSG00000154380|Q8N8S7|ENAH	ENSG00000154380|ENST00000366843|ENAH	ENSG00000154380|ENST00000366843|ENAH	MULTI-MSMS	HCT116MG_D190212_S2	2	928.431640625	1	927.478188	926.470912	0.99527	0.00092309	-1.4806	-0.0013732	-0.48532	-0.00045013	927.4762616344328	34.152	0.36311	33.977	33.709	34.072	-0.17511					10	6	2	0	0	0	0.47829	1	12617	12617		18.135	0	1	19581000			23216	4218	14605	14691	22331	22331					0.0047348828089752715
PATDPPVP	8	Unmodified	_PATDPPVP_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MSMS	HCT116MG_D190212_S4	4	397.2076416015625	2	397.208161	792.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.132	1	29.775	29.275	30.275	-0.3571								0	0	0	0.8837	1	10911	10911		11.114	0	1		+		23217	13798	14606	14692	22332	22332					-0.002735509479975917
PATDQRGAP	9	Unmodified	_PATDQRGAP_					0	0	0			REV__ADM2|p.S136T|1|0.37|ENSG00000128165|chr22:50482862-50482862|T/A|missense_variant	REV__ADM2|p.S136T|1|0.37|ENSG00000128165|chr22:50482862-50482862|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	457.2416687011719	2	456.730323	911.446094	-0.038522	-1.7594E-05	0.11981	5.4721E-05	0.081288	3.7126E-05	456.73036144785505	18.188	0.26099	17.832	17.702	17.963	-0.35647					7	4	2	0	0	0	0.14889	1	6232	6232		49.933	25.912	1	2832200	+		23218	9876	14607	14693	22333	22333					-0.013171468018072119
PATDQRGAP	9	Unmodified	_PATDQRGAP_					0	0	0			REV__ADM2|p.S136T|1|0.37|ENSG00000128165|chr22:50482862-50482862|T/A|missense_variant	REV__ADM2|p.S136T|1|0.37|ENSG00000128165|chr22:50482862-50482862|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	456.73052978515625	2	456.730323	911.446094	-0.10724	-4.8982E-05	0.17146	7.831E-05	0.064212	2.9328E-05	456.73050882868876	17.525	0.20772	17.355	17.225	17.433	-0.17047					5	3	2	0	0	0	0.26536	1	5847	5847		34.402	4.1769	1	1350200	+		23219	9876	14607	14693	22334	22334					-0.013171468018072119
PATDQRGAP	9	Unmodified	_PATDQRGAP_					0	0	0			REV__ADM2|p.S136T|1|0.37|ENSG00000128165|chr22:50482862-50482862|T/A|missense_variant	REV__ADM2|p.S136T|1|0.37|ENSG00000128165|chr22:50482862-50482862|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	456.7063903808594	2	456.730323	911.446094	-0.10724	-4.8982E-05	0.17146	7.831E-05	0.064212	2.9328E-05	456.73050882868876	17.525	0.20772	17.355	17.225	17.433	-0.17047					5	3	2	0	0	0	0.17558	1	5831	5831		41.84	16.44	1	1350200	+		23220	9876	14607	14693	22335	22335					-0.013171468018072119
PATDQRGAP	9	Unmodified	_PATDQRGAP_					0	0	0			REV__ADM2|p.S136T|1|0.37|ENSG00000128165|chr22:50482862-50482862|T/A|missense_variant	REV__ADM2|p.S136T|1|0.37|ENSG00000128165|chr22:50482862-50482862|T/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	456.730323	911.446094	0.057339	2.6188E-05	0.12347	5.6394E-05	0.18081	8.2583E-05	456.7304003692719	17.27	0.26014	17.354	17.173	17.433	0.084467	-0.00010044	-2.2729E-05	NaN	34.402	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2763500	+		23221	9876	14607	14693							-0.013171468018072119
PATDQVIRIR	10	Unmodified	_PATDQVIRIR_					0	0	0			REV__ENST00000589561.5_1_19:10746968-10754058:+|nuORF	REV__ENST00000589561.5_1_19:10746968-10754058:+|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1969299316406	3	390.231412	1167.67241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.298	1	18.118	17.618	18.618	-0.18002								0	0	0	0.94857	1	6132	6132		5.0475	0.3316	1		+		23222	11890	14608	14694	22336	22336					0.09527597037254054
PATHFPEGP	9	Unmodified	_PATHFPEGP_					0	0	0		ENST00000356909.7_2_22:44579199-44581739:+|nuORF	ENST00000356909.7_2_22:44579199-44581739:+|nuORF	ENST00000356909.7_2_22:44579199-44581739:+|nuORF	MSMS	HCT116MG_D190212_S3	3	476.7275390625	2	476.729792	951.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.362	1	16.448	15.948	16.948	0.085424								0	0	0	0.74436	1	5424	5424		16.942	0.79319	1				23223	7304	14609	14695	22337	22337					-0.032633611707069576
PATKDSLKYV	10	Unmodified	_PATKDSLKYV_					0	0	0		tr|U7T2V0|U7T2V0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00468PE=4SV=1	tr|U7T2V0|U7T2V0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00468PE=4SV=1	tr|U7T2V0|U7T2V0_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00468PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	561.31201171875	2	561.313689	1120.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.676	1	40.374	39.874	40.874	-0.30161								0	0	0	0.94107	1	15108	15108		6.7232	1.4263	1				23224	18584	14610	14696	22338	22338					0.05734281303239186
PATLLPRRDR	10	Unmodified	_PATLLPRRDR_					0	0	0			REV__nc|ENSG00000148300|Q9GZR2-2|REXO4	REV__nc|ENSG00000148300|Q9GZR2-2|REXO4	MSMS	HCT116MG_D190212_S2	2	597.85693359375	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.892	1	48.742	48.242	49.242	-0.14987								0	0	0	0.92272	1	18694	18694		10.824	3.215	1		+		23225	12536	14611	14697	22339	22339					0.11018705648439209
PATLLPRRDR	10	Unmodified	_PATLLPRRDR_					0	0	0			REV__nc|ENSG00000148300|Q9GZR2-2|REXO4	REV__nc|ENSG00000148300|Q9GZR2-2|REXO4	MSMS	HCT116MG_D190212_S2	2	597.8988647460938	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.995	1	48.841	48.341	49.341	-0.15405								0	0	0	0.90023	1	18737	18737		15.847	7.1018	1		+		23226	12536	14611	14697	22340	22340					0.11018705648439209
PATLYSLYTKT	11	Unmodified	_PATLYSLYTKT_					0	0	0			REV__BCAS2|p.N48T|1|0.31|ENSG00000116752|chr1:114581342-114581342|T/G|missense_variant	REV__BCAS2|p.N48T|1|0.31|ENSG00000116752|chr1:114581342-114581342|T/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	629.3399047851562	2	629.339904	1256.66525	0.56657	0.00035657	-0.10273	-6.4654E-05	0.46384	0.00029191	629.3397542108993	57.827	0.20925	57.652	57.521	57.73	-0.17494					9	3	3	0	0	0	0.72004	1	22362	22362		14.405	0.49933	1	11249000	+		23227	10034	14612	14698	22341	22341					0.04718819646177508
PATSQPLLSYS	11	Unmodified	_PATSQPLLSYS_					0	0	0			REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	MSMS	HCT116MG_D190212_S3	3	582.3012084960938	2	582.300778	1162.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.735	1	22.716	22.216	23.216	-0.018869								0	0	0	0.90489	1	7992	7992		19.362	4.9566	1		+		23228	14352	14613	14699	22342	22342					0.012213870609684818
PATTSHTP	8	Unmodified	_PATTSHTP_					0	0	0			REV__CON__Q28107	REV__CON__Q28107	MULTI-MSMS	HCT116MG_D190212_S2	2	811.3945922851562	1	811.394458	810.387182	0.95732	0.00077677	0.10287	8.3466E-05	1.0602	0.00086023	811.3943939350066	22.203	0.26032	21.818	21.635	21.895	-0.3852					6	4	2	0	0	0	0.21487	1	7882	7882		70.716	3.3717	1	5651100	+	+	23229	10266	14614	14700	22343	22343					-0.025596230961355104
PAVFLSPEQGW	11	Unmodified	_PAVFLSPEQGW_					0	0	0			REV__ENST00000319394.7_1_1:27634519-27634696:+|nuORF	REV__ENST00000319394.7_1_1:27634519-27634696:+|nuORF	MSMS	HCT116MG_D190212_S3	3	615.8101196289062	2	615.811313	1229.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.758	1	51.449	50.949	51.949	-0.30927								0	0	0	0.94538	1	19550	19550		8.7454	2.0222	1		+		23230	14880	14615	14701	22344	22344					0.0024539716048366245
PAVKGPAA	8	Unmodified	_PAVKGPAA_					0	0	0		MCTP1|p.D177Tfs*66|1|0.12|ENSG00000175471|chr5:95284047-95284047|C/-|frameshift_variant;MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant;MCTP1|p.K875Rfs*4|3|0.53|ENSG00000175471|chr5:94714873-94714873|T/-|frameshift_variant;ENSG00000175471|ENST00000515393|MCTP1	MCTP1|p.D177Tfs*66|1|0.12|ENSG00000175471|chr5:95284047-95284047|C/-|frameshift_variant	MCTP1|p.D177Tfs*66|1|0.12|ENSG00000175471|chr5:95284047-95284047|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	355.71160888671875	2	355.713414	709.412274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.876	1	38.494	37.994	38.994	-0.38163								0	0	0	0.8837	1	14264	14264		0.79363	0	1				23231	5383	14616	14702	22345	22345					0.04594476497072719
PAVKKKFMA	9	Unmodified	_PAVKKKFMA_					0	0	0		FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant;FRY|p.F2418Vfs*11|1|0.14|ENSG00000073910|chr13:32254229-32254230|-/G|frameshift_variant;ENSG00000073910|ENST00000542859|FRY;FRY|p.Y414Lfs*6|1|0.27|ENSG00000073910|chr13:32147339-32147340|-/T|frameshift_variant;FRY|p.T871Hfs*25|1|0.22|ENSG00000073910|chr13:32178361-32178362|-/C|frameshift_variant	FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant	FRY|p.L1623Wfs*22|1|0.44|ENSG00000073910|chr13:32224331-32224331|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	510.2576599121094	2	510.307155	1018.59976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.029	1	48.875	48.375	49.375	-0.15405								0	0	0	0.768	1	18751	18751		7.9102	0.62092	1				23232	1290	14617	14703	22346	22346					0.09120171710151226
PAVLKDFHY	9	Unmodified	_PAVLKDFHY_					0	0	0		ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	MSMS	HCT116MG_D190212_S2	2	545.0933837890625	2	545.290017	1088.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.166	1	49.997	49.497	50.497	-0.16938								0	0	0	0.76718	1	19221	19221		10.824	0.75	1				23233	2588	14618	14704	22347	22347					0.024740468228856116
PAVLWCPVHI	10	Unmodified	_PAVLWCPVHI_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|208|3|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|4.547726375381561|0.2927699401366612|3.96|483.0|208|3|anti-sense	MSMS	HCT116MG_D190212_S3	3	567.8084106445312	2	567.810062	1133.60557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.82	1	50.506	50.006	51.006	-0.31381								0	0	0	0.91507	1	19174	19174		12.532	1.7076	1		+		23234	16957	14619	14705	22348	22348					0.04411270221817176
PAVVRRLIV	9	Unmodified	_PAVVRRLIV_					0	0	0		ENST00000490674.1_1_2:113416436-113416796:+|nuORF	ENST00000490674.1_1_2:113416436-113416796:+|nuORF	ENST00000490674.1_1_2:113416436-113416796:+|nuORF	MSMS	HCT116MG_D190212_S3	3	512.0206909179688	2	511.845294	1021.67603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.473	1	51.161	50.661	51.661	-0.31166								0	0	0	0.76877	1	19435	19435		5.2307	0.90143	1				23235	8333	14620	14706	22349	22349					0.1660631160181083
PAVVSLPRPAG	11	Unmodified	_PAVVSLPRPAG_					0	0	0		SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant;ENSG00000165684|ENST00000684778|SNAPC4	SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant	SNAPC4|p.E1230Gfs*16|1|0.21|ENSG00000165684|chr9:136378131-136378138|CCTGGGCT/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	532.3150634765625	2	532.316566	1062.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.949	1	49.589	49.089	50.089	-0.36043								0	0	0	0.94924	1	18542	18542		6.7232	1.4263	1				23236	4790	14621	14707	22350	22350					0.0897742460556401
PAWAGGAW	8	Unmodified	_PAWAGGAW_					0	0	0		ENST00000532517.5_1_11:118498860-118498920:+|nuORF	ENST00000532517.5_1_11:118498860-118498920:+|nuORF	ENST00000532517.5_1_11:118498860-118498920:+|nuORF	MSMS	HCT116MG_D190212_S1	1	408.19537353515625	2	408.195388	814.376223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.118	1	60.118	59.618	60.618	0								0	0	0	0.8837	1	23167	23167		2.8892	0.82947	1				23237	8636	14622	14708	22351	22351					-0.03838980679768156
PAWEVSWPDSW	11	Unmodified	_PAWEVSWPDSW_					0	0	0		ENST00000498157.1_1_1:109813918-109815451:+|nuORF	ENST00000498157.1_1_1:109813918-109815451:+|nuORF	ENST00000498157.1_1_1:109813918-109815451:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	680.3047485351562	2	680.303852	1358.59315	0.050766	3.4536E-05	2.2781	0.0015498	2.3288	0.0015843	680.3052224438364	15.388	0.28558	15.226	15.124	15.409	-0.16173					6	5	2	0	0	0	0.74191	1	4989	4989		3.2813	0.28607	1	605610			23238	8407	14623	14709	22352	22352					-0.07180094707541684
PAWKEMIYW	9	Unmodified	_PAWKEMIYW_					0	0	0			REV__MROH2B|p.S691Lfs*6|1|0.45|ENSG00000171495|chr5:41038879-41038879|A/-|frameshift_variant	REV__MROH2B|p.S691Lfs*6|1|0.45|ENSG00000171495|chr5:41038879-41038879|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	612.2993774414062	2	612.299527	1222.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.457	1	20.256	19.756	20.756	-0.20133								0	0	0	0.768	1	7004	7004		7.9102	1.7044	1		+		23239	13349	14624	14710	22353	22353					-0.01788739877702028
PAWLLCYFF	9	Unmodified	_PAWLLCYFF_					0	0	0			REV__nc|ENSG00000084112|Q8WYL5-2|SSH1	REV__nc|ENSG00000084112|Q8WYL5-2|SSH1	MSMS	HCT116MG_D190212_S3	3	580.2880859375	2	580.285889	1158.55722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.344	1	49.028	48.528	49.528	-0.31596								0	0	0	0.7676	1	18579	18579		9.3474	1.4373	1		+		23240	17082	14625	14711	22354	22354					-0.015712234180909945
PAWLLRPRRI	10	Unmodified	_PAWLLRPRRI_					0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	MSMS	HCT116MG_D190212_S1	1	639.4014282226562	2	639.401299	1276.78804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.034	1	46.034	45.534	46.534	0								0	0	0	0.96291	1	17455	17455		1.8442	0.36234	1		+		23241	13796	14626	14712	22355	22355					0.1607216567879277
PAWMEFEREWN	11	Unmodified	_PAWMEFEREWN_					0	0	0			REV__ENSG00000116254|ENST00000262450|CHD5;REV__CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	REV__ENSG00000116254|ENST00000262450|CHD5	MSMS	HCT116MG_D190212_S2	2	747.8305053710938	2	747.827169	1493.63978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.206	1	50.034	49.534	50.534	-0.1719								0	0	0	0.95581	1	19237	19237		3.2813	1.7994	1		+		23242	10171;10170	14627	14713	22356	22356					-0.08728978147905764
PAYEDRCTV	9	Unmodified	_PAYEDRCTV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S1	1	527.2354125976562	2	527.237124	1052.45969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.959	1	49.959	49.459	50.459	0								0	0	0	0.76641	1	19050	19050		13.508	1.8676	1		+		23243	12706	14628	14714	22357	22357					-0.06443657084878396
PAYEDVNNCHE	11	Unmodified	_PAYEDVNNCHE_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7692592-7692715:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MSMS	HCT116MG_D190212_S3	3	645.6959838867188	2	645.756409	1289.49827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.452	1	52.146	51.646	52.646	-0.30639								0	0	0	0.95113	1	19829	19829		5.7319	1.4026	1				23244	1342	14629	14715	22358	22358					-0.13490396240990776
PAYEKLSAEQ	10	Unmodified	_PAYEKLSAEQ_					0	0	0		ENSG00000120215|ENST00000381477|MLANA	ENSG00000120215|ENST00000381477|MLANA	ENSG00000120215|ENST00000381477|MLANA	MULTI-MSMS	HCT116MG_D190212_S4	4	568.284423828125	2	568.285128	1134.5557	-0.14581	-8.2863E-05	-1.4424	-0.0008197	-1.5882	-0.00090256	568.2841906543364	14.861	0.33614	14.7	14.59	14.926	-0.16089					11	6	2	0	0	0	0.87945	1	4761	4761		3.5965	0.31518	1	1385700			23245	2689	14630	14716	22359	22359					-0.006191859731416116
PAYRRRVIL	9	Unmodified	_PAYRRRVIL_					0	0	0			REV__SHROOM4|p.N92Y|1|0.43|ENSG00000158352|chrX:50638304-50638304|T/A|missense_variant	REV__SHROOM4|p.N92Y|1|0.43|ENSG00000158352|chrX:50638304-50638304|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	382.2273254394531	3	381.908492	1142.70365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.555	1	15.555	15.055	16.055	0								0	0	0	0.76991	1	5176	5176		1.1933	0.12188	1		+		23246	17515	14631	14717	22360	22360					0.13800214862044413
PAYVWPVEPPV	11	Unmodified	_PAYVWPVEPPV_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	MSMS	HCT116MG_D190212_S1	1	627.058837890625	2	627.331882	1252.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.595	1	34.595	34.095	35.095	0								0	0	0	0.94924	1	12841	12841		6.7232	0.51738	1		+		23247	12039	14632	14718	22361	22361					0.03299158199956764
PAYYSCRQLYH	11	Unmodified	_PAYYSCRQLYH_					0	0	0			REV__ENST00000293826.4_1_17:7464569-7464860:+|nuORF	REV__ENST00000293826.4_1_17:7464569-7464860:+|nuORF	MSMS	HCT116MG_D190212_S1	1	700.8256225585938	2	700.824429	1399.63431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.535	1	23.535	23.035	24.035	0								0	0	0	0.94924	1	8386	8386		6.7232	0	1		+		23248	14753	14633	14719	22362	22362					-0.04952656939690314
PCAKRGPA	8	Unmodified	_PCAKRGPA_					0	0	0		TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	400.2165832519531	2	400.215798	798.417042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.636	1	26.336	25.836	26.836	-0.30087								0	0	0	0.8837	1	9498	9498		5.2307	0	1				23249	18264	14634	14720	22363	22363					0.00977037368204492
PCCCCYCC	8	Unmodified	_PCCCCYCC_					0	0	0		ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	MSMS	HCT116MG_D190212_S2	2	448.9085693359375	2	449.098158	896.181764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.92147	1	0.91521	0.41521	1.4152	-0.00626								0	0	0	0.8837	1	303	303		0	0	1				23250	6753	14635	14721	22364	22364					-0.2704796680139907
PCCCCYCC	8	Unmodified	_PCCCCYCC_					0	0	0		ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	ENST00000220931.10_1_8:102803112-102803181:-|nuORF	MSMS	HCT116MG_D190212_S4	4	448.9079284667969	2	449.098158	896.181764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.76878	1	0.50422	0.0042179	1.0042	-0.26456								0	0	0	0.8837	1	246	246		0	0	1				23251	6753	14635	14721	22365	22365					-0.2704796680139907
PCCCHGDG	8	Unmodified	_PCCCHGDG_					0	0	0			REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	REV__ENST00000572681.6_2_19:42791821-42793046:+|nuORF	MSMS	HCT116MG_D190212_S4	4	396.11865234375	2	396.117109	790.219664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.087	1	61.833	61.333	62.333	-0.25457								0	0	0	0.8837	1	23439	23439		0	0	1		+		23252	16582	14636	14722	22366	22366					-0.183836732284135
PCCGNSYCDEC	11	Unmodified	_PCCGNSYCDEC_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MSMS	HCT116MG_D190212_S3	3	597.17138671875	2	597.171952	1192.32935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.274	1	21.292	20.792	21.792	0.018446								0	0	0	0.96208	1	7406	7406		0	0	1				23253	2756	14637	14723	22367	22367					-0.2591208046205793
PCCSDEQFH	9	Unmodified	_PCCSDEQFH_					0	0	0			REV__ENSG00000188162|ENST00000399397|OTOG	REV__ENSG00000188162|ENST00000399397|OTOG	MSMS	HCT116MG_D190212_S1	1	533.1909790039062	2	533.191859	1064.36917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.069571	1	0.069571	-0.43043	0.56957	0								0	0	0	0.7701	1	27	27		0.52476	0.12405	1		+		23254	13947	14638	14724	22368	22368					-0.1604444940483063
PCDFDADC	8	Unmodified	_PCDFDADC_					0	0	0			REV__LRP1B|p.G2867A|1|0.06|ENSG00000168702|chr2:140503025-140503025|C/G|missense_variant	REV__LRP1B|p.G2867A|1|0.06|ENSG00000168702|chr2:140503025-140503025|C/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	443.1405029296875	2	443.141304	884.268054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3255	1	4.3255	3.8255	4.8255	0								0	0	0	0.8837	1	1303	1303		0.79363	0	1		+		23255	16982	14639	14725	22369	22369					-0.17870901107528425
PCPEVPISR	9	Unmodified	_PCPEVPISR_					0	0	0			REV__nc|ENSG00000204091|Q3Y452|TDRG1	REV__nc|ENSG00000204091|Q3Y452|TDRG1	MULTI-SECPEP	HCT116MG_D190212_S2	2	498.7534484863281	2	499.260402	996.506251	0.57677	0.00028796	-0.3772	-0.00018832	0.19957	9.9635E-05	499.2601813046923	34.376	0.25923	34.201	34.072	34.331	-0.17512					8	4	3	0	0	0	0.22506	1	12736	12736		26.268	9.1552	1	75571000	+		23256	17265	14640	14726	22370	22370					0.007858275370722367
PCRISHRENPY	11	Unmodified	_PCRISHRENPY_					0	0	0			REV__nc|ENSG00000142002|Q86TI2|DPP9	REV__nc|ENSG00000142002|Q86TI2|DPP9	MULTI-MSMS	HCT116MG_D190212_S1	1	686.3328247070312	2	686.332953	1370.65135	0.66917	0.00045927	-1.223	-0.00083942	-0.55388	-0.00038015	686.3322963418951	36.426	0.21004	36.426	36.312	36.522	0					6	3	2	0	0	0	0.74191	1	13600	13600		4.897	1.3005	1	6880400	+		23257	12342	14641	14727	22371	22371					-0.019147363338788637
PCRRLLRHVEE	11	Unmodified	_PCRRLLRHVEE_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MSMS	HCT116MG_D190212_S1	1	469.9264831542969	3	469.926105	1406.75649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.344	1	11.344	10.844	11.844	0								0	0	0	0.96208	1	3562	3562		0	0	1		+		23258	13021	14642	14728	22372	22372					0.0693780486255946
PCRWQLQRPT	10	Unmodified	_PCRWQLQRPT_					0	0	0			REV__ENST00000374869.7_2_X:63411649-63411688:-|nuORF	REV__ENST00000374869.7_2_X:63411649-63411688:-|nuORF	MSMS	HCT116MG_D190212_S2	2	429.0886535644531	3	428.892513	1283.65571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1836	1	7.9524	7.4524	8.4524	-0.23116								0	0	0	0.97045	1	2557	2557		0.15932	0.064481	1		+		23259	15205	14643	14729	22373	22373					0.02522772879638069
PCTAPALRAS	10	Unmodified	_PCTAPALRAS_					0	0	0			REV__ENST00000319080.7_12:122516865-122517156:+|nuORF	REV__ENST00000319080.7_12:122516865-122517156:+|nuORF	MSMS	HCT116MG_D190212_S1	1	493.75823974609375	2	493.758027	985.5015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.363	1	24.363	23.863	24.863	0								0	0	0	0.91279	1	8718	8718		13.042	0.51092	1		+		23260	14877	14644	14730	22374	22374					0.008169433942839532
PCWVLTAAH	9	Unmodified	_PCWVLTAAH_					0	0	0		ENST00000502854.5_1_5:176830573-176831380:-|nuORF;ENSG00000131187|ENST00000253496|F12;ENST00000510358.5_1_5:176830573-176831188:-|nuORF;nc|ENSG00000148702|Q14520-2|HABP2;ENSG00000148702|ENST00000351270|HABP2	ENST00000502854.5_1_5:176830573-176831380:-|nuORF	ENST00000502854.5_1_5:176830573-176831380:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	498.74090576171875	2	499.249837	996.485122	0.30025	0.0001499	1.8687	0.00093293	2.1689	0.0010828	499.25079662327374	20.188	0.25965	19.811	19.608	19.868	-0.37691					8	4	3	0	0	0	0.22781	1	6977	6977		11.64	0	1	4823400			23261	3130	14645	14731	22375	22375					-0.013261377718208678
PDAAGVGAP	9	Unmodified	_PDAAGVGAP_					0	0	0		ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	754.37451171875	1	754.372995	753.365718	0.44086	0.00033257	0.23973	0.00018085	0.68059	0.00051342	754.3732785209481	23.89	0.93738	23.829	23.582	24.519	-0.061447					25	17	3	0	0	0	0.36396	1	8668	8668		24.674	5.2349	1	12010000			23262	8433	14646	14732	22376	22376					-0.020830081248618626
PDAASRAIDY	10	Unmodified	_PDAASRAIDY_					0	0	0		nc|ENSG00000140391|O60637-3|TSPAN3;nc|ENSG00000140391|O60637-2|TSPAN3;ENSG00000140391|ENST00000267970|TSPAN3	nc|ENSG00000140391|O60637-3|TSPAN3	nc|ENSG00000140391|O60637-3|TSPAN3	MSMS	HCT116MG_D190212_S2	2	539.7631225585938	2	539.76182	1077.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.527	1	23.144	22.644	23.644	-0.38324								0	0	0	0.91971	1	8389	8389		11.495	1.4208	1				23263	3660	14647	14733	22377	22377					-0.026566258044113056
PDAERLVP	8	Unmodified	_PDAERLVP_					0	0	0			REV__ENST00000485301.1_1_9:131477094-131479133:+|nuORF	REV__ENST00000485301.1_1_9:131477094-131479133:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	449.6585998535156	2	448.745442	895.476331	0.0096217	4.3177E-06	0.034994	1.5703E-05	0.044615	2.0021E-05	448.74539762393954	18.532	0.31254	18.532	18.402	18.714	0					9	5	2	0	0	0	0.84759	1	6428	6428		5.7604	0	1	11510000	+		23264	15982	14648	14734	22378	22378					0.02441211863379067
PDCSDCYCSS	10	Unmodified	_PDCSDCYCSS_					0	0	0		L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense;chr13:43059012-43068930|126|14.91|0.21|6.12|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|15	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S2	2	540.1414794921875	2	540.159367	1078.30418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.0592	1	5.8847	5.3847	6.3847	-0.17458								0	0	0	0.97116	1	1914	1914		0	0	1				23265	449	14649	14735	22379	22379					-0.23183811992998926
PDCSDCYCSS	10	Unmodified	_PDCSDCYCSS_					0	0	0		L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense;chr13:43059012-43068930|126|14.91|0.21|6.12|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|15	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S2	2	540.1599731445312	2	540.159367	1078.30418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.103	1	6.9058	6.4058	7.4058	-0.19725								0	0	0	0.97116	1	2226	2226		0	0	1				23266	449	14649	14735	22380	22380					-0.23183811992998926
PDCSDCYCSS	10	Unmodified	_PDCSDCYCSS_					0	0	0		L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense;chr13:43059012-43068930|126|14.91|0.21|6.12|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|15	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S2	2	540.1416015625	2	540.159367	1078.30418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1568	1	6.9596	6.4596	7.4596	-0.19725								0	0	0	0.97116	1	2244	2244		0	0	1				23267	449	14649	14735	22381	22381					-0.23183811992998926
PDCSDCYCSS	10	Unmodified	_PDCSDCYCSS_					0	0	0		L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense;chr13:43059012-43068930|126|14.91|0.21|6.12|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|15	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S3	3	540.159912109375	2	540.159367	1078.30418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6376	1	8.6582	8.1582	9.1582	0.020599								0	0	0	0.97116	1	2605	2605		0	0	1				23268	449	14649	14735	22382	22382					-0.23183811992998926
PDDDDDDEDEP	11	Unmodified	_PDDDDDDEDEP_					0	0	0		ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.1371765136719	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.252	1	13.94	13.44	14.44	-0.31202								0	0	0	0.96208	1	4655	4655		0	0	1				23269	1776	14650	14736	22383	22383					-0.2367995380109278
PDDDDDDEDEP	11	Unmodified	_PDDDDDDEDEP_					0	0	0		ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S4	4	426.1371154785156	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3811	1	2.1166	1.6166	2.6166	-0.26456								0	0	0	0.96208	1	728	728		0	0	1				23270	1776	14650	14736	22384	22384					-0.2367995380109278
PDDDDDDEDEP	11	Unmodified	_PDDDDDDEDEP_					0	0	0		ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S4	4	426.13720703125	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.4971	1	4.2326	3.7326	4.7326	-0.26456								0	0	0	0.96208	1	1375	1375		0	0	1				23271	1776	14650	14736	22385	22385					-0.2367995380109278
PDDDDDDEDEP	11	Unmodified	_PDDDDDDEDEP_					0	0	0		ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S4	4	426.1369323730469	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7212	1	6.471	5.971	6.971	-0.25015								0	0	0	0.96208	1	2058	2058		0	0	1				23272	1776	14650	14736	22386	22386					-0.2367995380109278
PDDDDDDEDEP	11	Unmodified	_PDDDDDDEDEP_					0	0	0		ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S4	4	426.13690185546875	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.337	1	12.168	11.668	12.668	-0.16903								0	0	0	0.96208	1	3825	3825		0	0	1				23273	1776	14650	14736	22387	22387					-0.2367995380109278
PDDDDDDEDEP	11	Unmodified	_PDDDDDDEDEP_					0	0	0		ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S4	4	426.1369934082031	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.063	1	13.902	13.402	14.402	-0.16089								0	0	0	0.96208	1	4438	4438		0	0	1				23274	1776	14650	14736	22388	22388					-0.2367995380109278
PDDERPQGQP	10	Unmodified	_PDDERPQGQP_					0	0	0			REV__ENST00000446382.2_1_9:6834522-6834825:+|nuORF	REV__ENST00000446382.2_1_9:6834522-6834825:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	569.2859497070312	2	569.759809	1137.50507	0.17224	9.8135E-05	0.17625	0.00010042	0.34849	0.00019856	569.7598227652321	17.667	1.4569	17.748	16.649	18.106	0.081358					56	27	3	0	0	0	0.29716	1	5754	5754		10.8	5.9025	1	13641000	+		23275	15675	14651	14737	22389	22389					-0.05818715298141797
PDDIDVIEDN	10	Unmodified	_PDDIDVIEDN_					0	0	0			REV__TRPM7|p.K604N|1|0.38|ENSG00000092439|chr15:50612788-50612788|T/G|missense_variant	REV__TRPM7|p.K604N|1|0.38|ENSG00000092439|chr15:50612788-50612788|T/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	572.0557861328125	2	572.753858	1143.49316	0.55036	0.00031522	1.7909	0.0010258	2.3413	0.001341	572.7544509561851	40.601	0.25732	40.531	40.365	40.622	-0.069626					7	4	2	0	0	0	0.28843	1	15252	15252		24.021	10.115	1	26456000	+		23276	18021	14652	14738	22390	22390					-0.07284376831967165
PDDTDESSCC	10	Unmodified	_PDDTDESSCC_					0	0	0		ENST00000605744.1_1_11:76916597-76918172:+|nuORF	ENST00000605744.1_1_11:76916597-76918172:+|nuORF	ENST00000605744.1_1_11:76916597-76918172:+|nuORF	MSMS	HCT116MG_D190212_S2	2	536.16552734375	2	536.165704	1070.31685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.303	1	12.998	12.498	13.498	-0.30453								0	0	0	0.96937	1	4352	4352		0.40072	0.40072	1				23277	9108	14653	14739	22391	22391					-0.21549077329086685
PDECPGPQHFA	11	Unmodified	_PDECPGPQHFA_					0	0	0			REV__LIMD1|p.G320Vfs*6|1|0.25|ENSG00000144791|chr3:45595833-45595833|G/-|frameshift_variant	REV__LIMD1|p.G320Vfs*6|1|0.25|ENSG00000144791|chr3:45595833-45595833|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	599.2549438476562	2	599.253305	1196.49206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.242	1	34.856	34.356	35.356	-0.38606								0	0	0	0.94538	1	12900	12900		8.7454	2.0222	1				23278	12431	14654	14740	22392	22392					-0.0983286968187258
PDEFSNRI	8	Unmodified	_PDEFSNRI_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MSMS	HCT116MG_D190212_S4	4	489.2371826171875	2	489.237981	976.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.64	1	29.291	28.791	29.791	-0.34921								0	0	0	0.8837	1	10712	10712		7.9102	0	1		+		23279	14280	14655	14741	22393	22393					-0.027762800046275515
PDELITTVIY	10	Unmodified	_PDELITTVIY_					0	0	0			REV__nc|ENSG00000155511|P42261-3|GRIA1	REV__nc|ENSG00000155511|P42261-3|GRIA1	MULTI-SECPEP	HCT116MG_D190212_S1	1	388.2097473144531	3	388.544662	1162.61216	-0.052924	-2.0563E-05	-1.1393	-0.00044269	-1.1923	-0.00046325	388.54425872777466	24.751	0.20924	24.751	24.621	24.83	0					5	3	2	0	0	0	0.31087	1	8881	8881		3.3196	0	1	7141300	+		23280	12702	14656	14742	22394	22394					0.03735441863523192
PDEQSVDVV	9	Unmodified	_PDEQSVDVV_					0	0	0			REV__nc|ENSG00000211892|P01861-1|IGHG4	REV__nc|ENSG00000211892|P01861-1|IGHG4	MULTI-MSMS	HCT116MG_D190212_S3	3	987.4651489257812	1	987.462932	986.455655	0.70742	0.00069855	0.047815	4.7216E-05	0.75523	0.00074577	987.4630064384089	31.426	0.31331	31.156	30.96	31.273	-0.27028					8	5	2	0	0	0	0.031089	1	11494	11494		85.272	3.3818	1	6609700	+		23281	17285	14657	14743	22395	22395					-0.038114233069450165
PDESQRRF	8	Unmodified	_PDESQRRF_					0	0	0			REV__ENST00000426898.2_1_12:45610123-45776982:+|nuORF	REV__ENST00000426898.2_1_12:45610123-45776982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	517.75439453125	2	517.75433	1033.49411	0.11079	5.7363E-05	-0.46316	-0.0002398	-0.35237	-0.00018244	517.7541486153749	23.057	0.52388	22.819	22.55	23.074	-0.23758					24	9	4	0	0	0	0.74206	1	8082	8082		18.135	8.7875	1	7003600	+		23282	9952	14658	14744	22396	22396					-0.02130072881777778
PDESQRRF	8	Unmodified	_PDESQRRF_					0	0	0			REV__ENST00000426898.2_1_12:45610123-45776982:+|nuORF	REV__ENST00000426898.2_1_12:45610123-45776982:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	518.2459106445312	2	517.75433	1033.49411	0.11079	5.7363E-05	-0.46316	-0.0002398	-0.35237	-0.00018244	517.7541486153749	23.057	0.52388	22.819	22.55	23.074	-0.23758					24	9	4	0	0	0	0.31855	1	8061	8061		13.508	0	1	7003600	+		23283	9952	14658	14744	22397	22397					-0.02130072881777778
PDGAGVCTCC	10	Unmodified	_PDGAGVCTCC_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MSMS	HCT116MG_D190212_S3	3	463.16253662109375	2	463.164256	924.313959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1343	1	7.1482	6.6482	7.6482	0.013901								0	0	0	0.96937	1	2153	2153		0.40072	0.40072	1		+		23284	10470	14659	14745	22398	22398					-0.15122579196940933
PDGAKSDN	8	Unmodified	_PDGAKSDN_					0	0	0			REV__ENSG00000173705|ENST00000309558|SUSD5	REV__ENSG00000173705|ENST00000309558|SUSD5	MSMS	HCT116MG_D190212_S4	4	402.1797180175781	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.67069	1	0.40612	-0.093875	0.90612	-0.26456								0	0	0	0.8837	1	217	217		0.69038	0	1		+		23285	13449	14660	14746	22399	22399					-0.06336803855469952
PDGKRPAPDHP	11	Unmodified	_PDGKRPAPDHP_					0	0	0		ENST00000482850.1_1_17:19281831-19284064:+|nuORF	ENST00000482850.1_1_17:19281831-19284064:+|nuORF	ENST00000482850.1_1_17:19281831-19284064:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	593.8023681640625	2	593.801811	1185.58907	0.7278	0.00043217	-0.23139	-0.0001374	0.49641	0.00029477	593.8016636993348	25.847	0.72994	25.719	25.494	26.224	-0.12795					29	13	3	0	0	0	0.70377	1	9221	9221		20.415	4.5674	1	14629000			23286	8265	14661	14747	22400	22400					0.0036986058942147793
PDGKRPAPDHP	11	Unmodified	_PDGKRPAPDHP_					0	0	0		ENST00000482850.1_1_17:19281831-19284064:+|nuORF	ENST00000482850.1_1_17:19281831-19284064:+|nuORF	ENST00000482850.1_1_17:19281831-19284064:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	593.801811	1185.58907	0.7439	0.00044173	-0.039746	-2.3601E-05	0.70415	0.00041813	593.8018415045298	25.874	0.4149	25.505	25.291	25.706	-0.36914	-0.10704	0.00016059	NaN	20.415	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10844000			23287	8265	14661	14747							0.0036986058942147793
PDGPARPPPRK	11	Unmodified	_PDGPARPPPRK_					0	0	0			REV__nc|ENSG00000120903|Q15822-2|CHRNA2	REV__nc|ENSG00000120903|Q15822-2|CHRNA2	MSMS	HCT116MG_D190212_S3	3	594.3333740234375	2	594.335821	1186.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.714	1	36.413	35.913	36.913	-0.30113								0	0	0	0.94755	1	13575	13575		7.609	0.88579	1		+		23288	11703	14662	14748	22401	22401					0.07122730240052988
PDGTHGPR	8	Unmodified	_PDGTHGPR_					0	0	0			REV__SYNGR4|p.A72Sfs*100|1|0.13|ENSG00000105467|chr19:48373632-48373633|-/G|frameshift_variant	REV__SYNGR4|p.A72Sfs*100|1|0.13|ENSG00000105467|chr19:48373632-48373633|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	836.4013061523438	1	836.400941	835.393664	0.53602	0.00044832	0.19739	0.0001651	0.7334	0.00061342	836.4010321403186	17.114	0.78041	17.199	16.964	17.745	0.084467					25	14	3	0	0	0	0.17804	1	5730	5730		77.984	7.2688	1	17359000	+		23289	17607	14663	14749	22402	22402					-0.03061685144768944
PDGTHGPR	8	Unmodified	_PDGTHGPR_					0	0	0			REV__SYNGR4|p.A72Sfs*100|1|0.13|ENSG00000105467|chr19:48373632-48373633|-/G|frameshift_variant	REV__SYNGR4|p.A72Sfs*100|1|0.13|ENSG00000105467|chr19:48373632-48373633|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	836.400941	835.393664	0.53602	0.00044832	0.19739	0.0001651	0.7334	0.00061342	836.4010321403186	17.114	0.78041	17.199	16.964	17.745	0.084467	-0.021784	0.00012814	NaN	77.984	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17359000	+		23290	17607	14663	14749							-0.03061685144768944
PDGTQLILAA	10	Unmodified	_PDGTQLILAA_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	HCT116MG_D190212_S4	4	499.7799377441406	2	499.779482	997.544411	0.40755	0.00020369	-0.10781	-5.3879E-05	0.29975	0.00014981	499.7795585720657	32.614	0.25964	32.234	32.105	32.364	-0.37924					10	4	3	0	0	0	0.45751	1	11896	11896		38.176	0.20157	1	6234900			23291	4647	14664	14750	22403	22403					0.04554036723379795
PDHHLSTY	8	Unmodified	_PDHHLSTY_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MSMS	HCT116MG_D190212_S2	2	485.2232360839844	2	485.224874	968.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.763	1	28.446	27.946	28.946	-0.31613								0	0	0	0.75335	1	10506	10506		26.341	3.1929	1				23292	5702	14665	14751	22404	22404					-0.05028549176086017
PDHRLNDLAAK	11	Unmodified	_PDHRLNDLAAK_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	MULTI-MSMS	HCT116MG_D190212_S3	3	417.2261047363281	3	417.226438	1248.65748	0.086688	3.6169E-05	-0.45958	-0.00019175	-0.37289	-0.00015558	417.2257373622837	15.326	0.41578	15.409	15.038	15.454	0.083271					12	7	2	0	0	0	0.74191	1	4943	4943		6.2344	0.45093	1	1196600	+		23293	13791	14666	14752	22405	22405					0.04310105169270173
PDHRLNDLAAK	11	Unmodified	_PDHRLNDLAAK_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	417.226438	1248.65748	0.086688	3.6169E-05	-0.45958	-0.00019175	-0.37289	-0.00015558	417.2257373622837	15.326	0.41578	15.409	15.038	15.454	0.083271	0.1072	-0.00067139	NaN	6.2344	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1196600	+		23294	13791	14666	14752							0.04310105169270173
PDHRLNDLAAK	11	Unmodified	_PDHRLNDLAAK_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	REV__nc|ENSG00000184313|Q68CQ1-9|MROH7	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	417.226438	1248.65748	-0.4833	-0.00020165	0.55134	0.00023003	0.068042	2.8389E-05	417.22630745445457	15.356	0.23469	15.194	15.028	15.263	-0.16173	-0.1072	0.00059396	NaN	6.2344	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	806130	+		23295	13791	14666	14752							0.04310105169270173
PDHRPRELGQ	10	Unmodified	_PDHRPRELGQ_					0	0	0		ENST00000254846.9_1_17:7748692-7748767:+|nuORF	ENST00000254846.9_1_17:7748692-7748767:+|nuORF	ENST00000254846.9_1_17:7748692-7748767:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	602.8131713867188	2	602.81271	1203.61087	0.54994	0.00033151	-0.071514	-4.311E-05	0.47842	0.0002884	602.8127353350495	21.164	0.26752	21.164	21.012	21.279	0					7	4	2	0	0	0	0.73913	1	7454	7454		17.113	3.2068	1	4113200			23296	6812	14667	14753	22406	22406					0.017206653379844283
PDKKRKQFRRF	11	Unmodified	_PDKKRKQFRRF_					0	0	0			REV__ENSG00000248485|ENST00000504449|PCP4L1	REV__ENSG00000248485|ENST00000504449|PCP4L1	MSMS	HCT116MG_D190212_S4	4	753.4411010742188	2	753.444226	1504.8739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.264	1	44.891	44.391	45.391	-0.37266								0	0	0	0.9465	1	16691	16691		8.1555	6.6736	1		+		23297	14372	14668	14754	22407	22407					0.1416570579360723
PDKPRVPVK	9	Unmodified	_PDKPRVPVK_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MSMS	HCT116MG_D190212_S3	3	518.31689453125	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.233	1	40.932	40.432	41.432	-0.30185								0	0	0	0.76967	1	15332	15332		2.0598	0	1		+		23298	13329	14669	14755	22408	22408					0.10773728468188892
PDKSEKNKR	9	Unmodified	_PDKSEKNKR_					0	0	0			REV__ENST00000465604.1_1_1:26227509-26228203:-|nuORF	REV__ENST00000465604.1_1_1:26227509-26228203:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	367.196044921875	3	367.871883	1100.59382	-0.13896	-5.1121E-05	-0.11371	-4.183E-05	-0.25267	-9.2951E-05	367.8717652220897	26.322	0.20624	25.96	25.818	26.024	-0.36164					5	3	2	0	0	0	0.26046	1	9511	9511		4.5289	0	1	2699400	+		23299	11622	14670	14756	22409	22409					0.04754744732167637
PDLQRQRWW	9	Unmodified	_PDLQRQRWW_					0	0	0			REV__ENST00000480825.6_1_1:36937516-36938309:-|nuORF	REV__ENST00000480825.6_1_1:36937516-36938309:-|nuORF	MSMS	HCT116MG_D190212_S4	4	428.4850158691406	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.626	1	12.457	11.957	12.957	-0.16903								0	0	0	0.77018	1	3928	3928		0.26902	0	1		+		23300	11657	14671	14757	22410	22410					0.021858460973135152
PDLQRQRWW	9	Unmodified	_PDLQRQRWW_					0	0	0			REV__ENST00000480825.6_1_1:36937516-36938309:-|nuORF	REV__ENST00000480825.6_1_1:36937516-36938309:-|nuORF	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.816	1	14.656	14.156	15.156	-0.16089								0	0	0	0.77018	1	4726	4726		0.26902	0	1		+		23301	11657	14671	14757	22411	22411					0.021858460973135152
PDLSVGAAPP	10	Unmodified	_PDLSVGAAPP_					0	0	0			REV__ENSG00000131381|ENST00000253699|RBSN	REV__ENSG00000131381|ENST00000253699|RBSN	MULTI-SECPEP	HCT116MG_D190212_S2	2	462.1467590332031	2	462.245275	922.475997	0.32151	0.00014862	0.46654	0.00021566	0.78805	0.00036427	462.2454237452095	31.267	0.20648	31	30.87	31.077	-0.26704					5	3	2	0	0	0	0.27694	1	11518	11518		15.847	0	1	7897100	+		23302	11961	14672	14758	22412	22412					0.011657921435244134
PDNDGCCG	8	Unmodified	_PDNDGCCG_					0	0	0			REV__ENSG00000180817|ENST00000373232|PPA1	REV__ENSG00000180817|ENST00000373232|PPA1	MSMS	HCT116MG_D190212_S3	3	390.6181640625	2	390.617996	779.221438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.341	1	13.41	12.91	13.91	0.069158								0	0	0	0.8837	1	4224	4224		0	0	1		+		23303	13671	14673	14759	22413	22413					-0.17700340938802128
PDPGILAY	8	Unmodified	_PDPGILAY_					0	0	0		nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;PNPLA8|p.T757Qfs*10|1|0.38|ENSG00000135241|chr7:108472481-108472481|T/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8;PNPLA8|p.R507Tfs*8|1|0.05|ENSG00000135241|chr7:108496690-108496691|-/ATTATATAGGTAGT|frameshift_variant;PNPLA8|p.R507Qfs*27|1|0.05|ENSG00000135241|chr7:108496689-108496690|-/T|frameshift_variant	nc|ENSG00000135241|Q9NP80-3|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	MSMS	HCT116MG_D190212_S3	3	423.2235412597656	2	423.223811	844.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.15	1	26.981	26.481	27.481	-0.16933								0	0	0	0.8837	1	9772	9772		14.582	2.0501	1				23304	3333	14674	14760	22414	22414					0.004630220860804002
PDPHPWQLW	9	Unmodified	_PDPHPWQLW_					0	0	0			REV__KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant	REV__KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	588.2852783203125	2	588.285266	1174.55598	0.70096	0.00041237	-0.30893	-0.00018174	0.39203	0.00023063	588.2848195620921	35.13	0.51484	35.13	34.804	35.319	0					12	9	2	0	0	0	0.71898	1	13024	13024		3.9444	0	1	20320000	+		23305	16929	14675	14761	22415	22415					-0.02431721462630776
PDPQRQGSPP	10	Unmodified	_PDPQRQGSPP_					0	0	0			REV__ENST00000366584.8_1_1:236686911-236687247:+|nuORF	REV__ENST00000366584.8_1_1:236686911-236687247:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	540.735595703125	2	539.767437	1077.52032	0.40105	0.00021647	-0.081327	-4.3898E-05	0.31972	0.00017258	539.7673589950173	15.806	1.5089	15.892	15.665	17.174	0.085424					68	28	3	0	0	0	0.48137	1	5362	5362		36.506	14.969	1	11125000	+		23306	15106	14676	14762	22416	22416					-0.015338037102765156
PDPQRQGSPP	10	Unmodified	_PDPQRQGSPP_					0	0	0			REV__ENST00000366584.8_1_1:236686911-236687247:+|nuORF	REV__ENST00000366584.8_1_1:236686911-236687247:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	539.767822265625	2	539.767437	1077.52032	-0.1721	-9.2894E-05	0.46865	0.00025296	0.29655	0.00016007	539.7676512183044	16.18	1.307	16.017	15.563	16.87	-0.16364					47	25	2	0	0	0	0.45751	1	5154	5154		38.176	0	1	1488500	+		23307	15106	14676	14762	22417	22417					-0.015338037102765156
PDPVESIP	8	Unmodified	_PDPVESIP_					0	0	0			REV__ENST00000478082.5_1_7:100856177-100861250:-|nuORF	REV__ENST00000478082.5_1_7:100856177-100861250:-|nuORF	MSMS	HCT116MG_D190212_S4	4	427.219482421875	2	427.218726	852.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.021	1	26.71	26.21	27.21	-0.3114								0	0	0	0.8837	1	9654	9654		5.2307	0	1		+		23308	15928	14677	14763	22418	22418					-0.00921585639150635
PDQITNIAK	9	Unmodified	_PDQITNIAK_					0	0	0		nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS	nc|ENSG00000135677|P15586-2|GNS	nc|ENSG00000135677|P15586-2|GNS	MSMS	HCT116MG_D190212_S1	1	500.27777099609375	2	500.277106	998.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.613	1	27.613	27.113	28.113	0								0	0	0	0.62451	1	10028	10028		22.736	4.5899	1				23309	3367	14678	14764	22419	22419					0.04033152580609567
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant	REV__IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	512.9857177734375	3	512.985457	1535.93454	0.49039	0.00025156	-0.045316	-2.3246E-05	0.44508	0.00022832	512.985405711093	54.257	2.2994	54.257	53.307	55.606	0					192	44	6	0	0	0	0.74191	5	20468	20468;20928;21162;21293;21340		0.094841	0.094841	1	3298099999.9999995	+		23310	10922	14679	14765	22420;22421;22422;22423;22424	22420					0.18801235896557955
PDQSFRTGSP	10	Unmodified	_PDQSFRTGSP_					0	0	0		PLEKHM2|p.E769Rfs*51|2|0.23|ENSG00000116786|chr1:15730622-15730622|C/-|frameshift_variant;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2	PLEKHM2|p.E769Rfs*51|2|0.23|ENSG00000116786|chr1:15730622-15730622|C/-|frameshift_variant	PLEKHM2|p.E769Rfs*51|2|0.23|ENSG00000116786|chr1:15730622-15730622|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	364.5087585449219	3	364.508722	1090.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.56	1	16.218	15.718	16.718	-0.34183								0	0	0	0.94339	1	5581	5581		3.3196	0.88486	1				23311	2539	14680	14766	22425	22425					-0.03729509947174847
PDRPHSAEGP	10	Unmodified	_PDRPHSAEGP_					0	0	0		ENST00000461408.2_1_15:59040902-59041232:-|nuORF	ENST00000461408.2_1_15:59040902-59041232:-|nuORF	ENST00000461408.2_1_15:59040902-59041232:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	354.8368225097656	3	354.83695	1061.48902	-0.083084	-2.9481E-05	0.035448	1.2578E-05	-0.047636	-1.6903E-05	354.83690133589647	15.822	0.20818	15.822	15.692	15.9	0					5	3	2	0	0	0	0.88195	1	5310	5310		1.4551	0.26178	1	3876300			23312	8056	14681	14767	22426	22426					-0.0392637674440266
PDRRQQRWRV	10	Unmodified	_PDRRQQRWRV_					0	0	0			REV__ENST00000546514.1_1_12:50561052-50561130:-|nuORF	REV__ENST00000546514.1_1_12:50561052-50561130:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	699.0606689453125	2	698.887075	1395.7596	0.58378	0.000408	-0.32936	-0.00023019	0.25442	0.00017781	698.8867518310262	51.009	0.41351	51.009	50.833	51.246	0					13	7	3	0	0	0	0.88777	1	19448	19448		3.2813	1.9518	1	7433000	+		23313	16402	14682	14768	22427	22427					0.0775481603152457
PDSDWVPPPPP	11	Unmodified	_PDSDWVPPPPP_					0	0	0		nc|ENSG00000162775|Q96T37-4|RBM15;RBM15|p.G910Afs*41|1|0.42|ENSG00000162775|chr1:110342129-110342129|G/-|frameshift_variant;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	MULTI-SECPEP	HCT116MG_D190212_S1	1	601.7880249023438	2	602.287671	1202.56079	0.59707	0.00035961	3.0983	0.0018661	3.6954	0.0022257	602.2898846864781	29.541	0.2084	29.541	29.373	29.581	0					5	3	2	0	0	0	0.33894	1	10812	10812		20.454	0	1	5311400			23314	4555	14683	14769	22428	22428					-0.03238882110531449
PDSPVIPP	8	Unmodified	_PDSPVIPP_					0	0	0		REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant;nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant	REV3L|p.G2684Vfs*11|1|0.35|ENSG00000009413|chr6:111329724-111329724|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	411.2223205566406	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.914	1	31.675	31.175	32.175	-0.23929								0	0	0	0.8837	1	11790	11790		10.183	0	1				23315	867	14684	14770	22429	22429					0.01567022086101133
PDSSVQIKQEP	11	Unmodified	_PDSSVQIKQEP_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	HCT116MG_D190212_S2	2	614.820068359375	2	614.314417	1226.61428	0.39524	0.0002428	3.8541	0.0023677	4.2494	0.0026105	614.8196716633469	19.354	0.36462	18.984	18.784	19.148	-0.3695					15	6	3	0	0	0	0.72218	1	6743	6743		13.615	1.3742	1	28523000			23316	1913	14685	14771	22430	22430					0.01003870601334711
PDSSYLSG	8	Unmodified	_PDSSYLSG_					0	0	0		nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	MSMS	HCT116MG_D190212_S3	3	413.1859130859375	2	413.184883	824.355213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.724	1	49.408	48.908	49.908	-0.31596								0	0	0	0.8837	1	18732	18732		9.3474	0	1				23317	2007	14686	14772	22431	22431					-0.0639903556993886
PDSWGSTPAD	10	Unmodified	_PDSWGSTPAD_					0	0	0		ENSG00000166823|ENST00000300057|MESP1	ENSG00000166823|ENST00000300057|MESP1	ENSG00000166823|ENST00000300057|MESP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	516.29931640625	2	516.717079	1031.4196	0.36963	0.00019099	-0.0074654	-3.8575E-06	0.36217	0.00018714	516.717085789813	22.483	0.20729	22.097	21.999	22.206	-0.3852					5	3	2	0	0	0	0.30738	1	7935	7935		9.3831	9.3831	1	6189100			23318	4880	14687	14773	22432	22432					-0.09484880483796587
PDSWGSTPAD	10	Unmodified	_PDSWGSTPAD_					0	0	0		ENSG00000166823|ENST00000300057|MESP1	ENSG00000166823|ENST00000300057|MESP1	ENSG00000166823|ENST00000300057|MESP1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	516.717079	1031.4196	0.39352	0.00020334	-0.34828	-0.00017996	0.045241	2.3377E-05	516.7169336868287	22.037	0.15667	22.037	21.959	22.115	0	-0.030332	-9.3811E-05	NaN	13.906	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4233900			23319	4880	14687	14773							-0.09484880483796587
PDTAPPRTAH	10	Unmodified	_PDTAPPRTAH_					0	0	0		ENST00000591879.1_3_17:74475917-74477746:-|nuORF	ENST00000591879.1_3_17:74475917-74477746:-|nuORF	ENST00000591879.1_3_17:74475917-74477746:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	355.06976318359375	3	354.849079	1061.52541	0.087827	3.1165E-05	3.0063	0.0010668	3.0941	0.0010979	354.8499202564415	25.52	0.156	25.24	25.11	25.266	-0.27958					4	2	2	0	0	0	0.88647	1	9029	9029		1.9064	0.25375	1	1523600			23320	9036	14688	14774	22433	22433					-0.0028949984766768466
PDTLSSLLCWR	11	Unmodified	_PDTLSSLLCWR_					0	0	0		nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	MSMS	HCT116MG_D190212_S1	1	430.8875427246094	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.311	1	13.311	12.811	13.811	0								0	0	0	0.9619	1	4318	4318		0.094841	0	1				23321	9602	14689	14775	22434	22434					0.010571113458127002
PDTLSSLLCWR	11	Unmodified	_PDTLSSLLCWR_					0	0	0		nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	MSMS	HCT116MG_D190212_S2	2	430.8879699707031	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.937	1	11.647	11.147	12.147	-0.28953								0	0	0	0.9619	1	3876	3876		0.094841	0	1				23322	9602	14689	14775	22435	22435					0.010571113458127002
PDTLSSLLCWR	11	Unmodified	_PDTLSSLLCWR_					0	0	0		nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	MSMS	HCT116MG_D190212_S2	2	430.8885498046875	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.006	1	11.716	11.216	12.216	-0.28953								0	0	0	0.9619	1	3902	3902		0.094841	0	1				23323	9602	14689	14775	22436	22436					0.010571113458127002
PDTLSSLLCWR	11	Unmodified	_PDTLSSLLCWR_					0	0	0		nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	MSMS	HCT116MG_D190212_S2	2	430.8880310058594	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.577	1	12.28	11.78	12.78	-0.29721								0	0	0	0.9619	1	4115	4115		0.094841	0	1				23324	9602	14689	14775	22437	22437					0.010571113458127002
PDTLSSLLCWR	11	Unmodified	_PDTLSSLLCWR_					0	0	0		nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	MSMS	HCT116MG_D190212_S2	2	430.8881530761719	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.751	1	13.439	12.939	13.939	-0.31202								0	0	0	0.9619	1	4498	4498		0.094841	0	1				23325	9602	14689	14775	22438	22438					0.010571113458127002
PDTLSSLLCWR	11	Unmodified	_PDTLSSLLCWR_					0	0	0		nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	MSMS	HCT116MG_D190212_S4	4	430.88824462890625	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.169	1	10.988	10.488	11.488	-0.18135								0	0	0	0.9619	1	3444	3444		0.094841	0	1				23326	9602	14689	14775	22439	22439					0.010571113458127002
PDTLSSLLCWR	11	Unmodified	_PDTLSSLLCWR_					0	0	0		nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	nc|ENSG00000197595|Q6ZP68|ATP11AUN	MSMS	HCT116MG_D190212_S4	4	430.8883056640625	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.691	1	11.517	11.017	12.017	-0.17441								0	0	0	0.9619	1	3611	3611		0.094841	0	1				23327	9602	14689	14775	22440	22440					0.010571113458127002
PDTRPSAVP	9	Unmodified	_PDTRPSAVP_					0	0	0			REV__ZIC3|p.R304Gfs*104|1|0.17|ENSG00000156925|chrX:137567597-137567597|C/-|frameshift_variant	REV__ZIC3|p.R304Gfs*104|1|0.17|ENSG00000156925|chrX:137567597-137567597|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	470.2477111816406	2	470.248349	938.482145	0.35283	0.00016592	-0.15994	-7.5211E-05	0.19289	9.0708E-05	470.2480128488175	34.902	0.26015	34.902	34.753	35.013	0					6	4	2	0	0	0	0.32978	1	12995	12995		27.629	5.8822	1	4439600	+		23328	12734	14690	14776	22441	22441					0.010443103750503724
PDVPPGPL	8	Unmodified	_PDVPPGPL_					0	0	0			REV__nc|ENSG00000167646|Q8N9W5-3|DNAAF3	REV__nc|ENSG00000167646|Q8N9W5-3|DNAAF3	MSMS	HCT116MG_D190212_S1	1	396.2191467285156	2	396.218529	790.422505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.544	1	18.544	18.044	19.044	0								0	0	0	0.8837	1	6380	6380		10.183	4.423	1		+		23329	17203	14691	14777	22442	22442					0.018910394316549173
PDVPVKYRK	9	Unmodified	_PDVPVKYRK_					0	0	0		nc|ENSG00000001460|Q5TH74-3|STPG1	nc|ENSG00000001460|Q5TH74-3|STPG1	nc|ENSG00000001460|Q5TH74-3|STPG1	MULTI-SECPEP	HCT116MG_D190212_S2	2	367.196044921875	3	367.885353	1100.63423	-0.2143	-7.8837E-05	-0.38494	-0.00014162	-0.59924	-0.00022045	367.88519834189015	26.36	0.15487	25.999	25.921	26.076	-0.36164					4	2	2	0	0	0	0.26488	1	9511	9511		2.2828	0	1	10962000			23330	9360	14692	14778	22443	22443					0.08793711122598324
PDVVGNVTSLC	11	Unmodified	_PDVVGNVTSLC_					0	0	0			REV__GPR132|p.A303V|1|0.22|ENSG00000183484|chr14:105051229-105051229|G/A|missense_variant	REV__GPR132|p.A303V|1|0.22|ENSG00000183484|chr14:105051229-105051229|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	552.2750244140625	2	552.273706	1102.53286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.869	1	54.573	54.073	55.073	-0.29587								0	0	0	0.93717	1	20801	20801		13.042	0.51092	1		+		23331	16853	14693	14779	22444	22444					-0.014305283622434217
PDWTHPPAL	9	Unmodified	_PDWTHPPAL_					0	0	0		RTKN|p.L511Pfs*21|1|0.22|ENSG00000114993|chr2:74426403-74426404|-/G|frameshift_variant	RTKN|p.L511Pfs*21|1|0.22|ENSG00000114993|chr2:74426403-74426404|-/G|frameshift_variant	RTKN|p.L511Pfs*21|1|0.22|ENSG00000114993|chr2:74426403-74426404|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	517.2593994140625	2	517.258717	1032.50288	0.36644	0.00018955	-0.074719	-3.8649E-05	0.29172	0.0001509	517.2588501961545	28.981	0.2084	28.76	28.629	28.838	-0.22195					6	3	2	0	0	0	0.49914	1	10538	10538		16.942	2.3606	1	3995600			23332	18129	14694	14780	22445	22445					-0.012070992453118379
PDYLDFYRS	9	Unmodified	_PDYLDFYRS_					0	0	0			REV__ENST00000568515.1_1_15:66007788-66048788:-|nuORF	REV__ENST00000568515.1_1_15:66007788-66048788:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	392.52044677734375	3	392.517106	1174.52949	-0.017249	-6.7707E-06	4.4695	0.0017543	4.4522	0.0017476	392.51897498625357	25.582	0.31251	25.213	25.03	25.343	-0.36914					12	5	3	0	0	0	0.097615	1	9216	9216		45.74	22.965	1	21277000	+		23333	10355	14695	14781	22446	22446					-0.05079455144618805
PDYYSSLRIS	10	Unmodified	_PDYYSSLRIS_					0	0	0		ENST00000511831.1_1_6:43484243-43484339:-|nuORF	ENST00000511831.1_1_6:43484243-43484339:-|nuORF	ENST00000511831.1_1_6:43484243-43484339:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	600.798095703125	2	600.798403	1199.58225	0.42623	0.00025608	0.25362	0.00015237	0.67984	0.00040845	600.7983977353649	43.549	0.2586	43.549	43.368	43.626	0					6	4	2	0	0	0	0.30738	1	16474	16474		13.906	7.7003	1	15185000			23334	8503	14696	14782	22447	22447					-0.00955497081804424
PEAAEGPEV	9	Unmodified	_PEAAEGPEV_					0	0	0		nc|ENSG00000147144|Q96HB5|CCDC120;nc|ENSG00000147144|Q96HB5-3|CCDC120;ENSG00000147144|ENST00000603986|CCDC120;nc|ENSG00000147144|Q96HB5-2|CCDC120;nc|ENSG00000147144|Q96HB5-5|CCDC120;ENST00000603906.1_1_X:48916566-48926191:+|nuORF	nc|ENSG00000147144|Q96HB5|CCDC120	nc|ENSG00000147144|Q96HB5|CCDC120	MULTI-MSMS	HCT116MG_D190212_S1	1	449.7115783691406	2	449.711265	897.407977	0.12702	5.7123E-05	-0.27089	-0.00012182	-0.14387	-6.4699E-05	449.7112245401631	29.624	0.3641	29.624	29.425	29.789	0					10	6	2	0	0	0	0.071351	1	10839	10839		64.236	9.4628	1	9504800			23335	3975	14697	14783	22448	22448					-0.044830775071318385
PEAPAGGPVH	10	Unmodified	_PEAPAGGPVH_					0	0	0		ENSG00000170955|ENST00000303927|CAVIN3	ENSG00000170955|ENST00000303927|CAVIN3	ENSG00000170955|ENST00000303927|CAVIN3	MSMS	HCT116MG_D190212_S4	4	466.23394775390625	2	466.235242	930.45593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.998	1	27.677	27.177	28.177	-0.32157								0	0	0	0.94107	1	10049	10049		6.7232	1.4925	1				23336	5170	14698	14784	22449	22449					-0.012079587964194616
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S1	1	426.13720703125	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8595	1	5.8595	5.3595	6.3595	0								0	0	0	0.96208	1	1765	1765		0	0	1		+		23337	11120	14699	14785	22450	22450					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S1	1	426.1371154785156	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0598	1	8.0598	7.5598	8.5598	0								0	0	0	0.96208	1	2431	2431		0	0	1		+		23338	11120	14699	14785	22451	22451					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.13714599609375	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.20895	1	0.20501	-0.29499	0.70501	-0.0039395								0	0	0	0.96208	1	82	82		0	0	1		+		23339	11120	14699	14785	22452	22452					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.1370849609375	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2661	1	1.2599	0.75987	1.7599	-0.0062599								0	0	0	0.96208	1	413	413		0	0	1		+		23340	11120	14699	14785	22453	22453					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.13714599609375	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8132	1	1.8	1.3	2.3	-0.013221								0	0	0	0.96208	1	591	591		0	0	1		+		23341	11120	14699	14785	22454	22454					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.1368713378906	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8564	1	2.8161	2.3161	3.3161	-0.040353								0	0	0	0.96208	1	916	916		0	0	1		+		23342	11120	14699	14785	22455	22455					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.1370544433594	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.8919	1	3.8298	3.3298	4.3298	-0.062129								0	0	0	0.96208	1	1236	1236		0	0	1		+		23343	11120	14699	14785	22456	22456					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.13690185546875	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.4229	1	4.3338	3.8338	4.8338	-0.089082								0	0	0	0.96208	1	1400	1400		0	0	1		+		23344	11120	14699	14785	22457	22457					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.13714599609375	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9714	1	5.7968	5.2968	6.2968	-0.17458								0	0	0	0.96208	1	1894	1894		0	0	1		+		23345	11120	14699	14785	22458	22458					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.1370849609375	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4746	1	6.3	5.8	6.8	-0.17458								0	0	0	0.96208	1	2042	2042		0	0	1		+		23346	11120	14699	14785	22459	22459					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.13726806640625	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1172	1	6.9199	6.4199	7.4199	-0.19725								0	0	0	0.96208	1	2231	2231		0	0	1		+		23347	11120	14699	14785	22460	22460					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.13726806640625	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.181	1	9.9161	9.4161	10.416	-0.26472								0	0	0	0.96208	1	3208	3208		0	0	1		+		23348	11120	14699	14785	22461	22461					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.1370544433594	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.124	1	62.995	62.495	63.495	-0.12924								0	0	0	0.96208	1	24474	24474		0	0	1		+		23349	11120	14699	14785	22462	22462					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S2	2	426.1372375488281	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.952	1	63.836	63.336	64.336	-0.11586								0	0	0	0.96208	1	24782	24782		0	0	1		+		23350	11120	14699	14785	22463	22463					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S3	3	426.1371154785156	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.4415	1	1.5024	1.0024	2.0024	0.060905								0	0	0	0.96208	1	448	448		0	0	1		+		23351	11120	14699	14785	22464	22464					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S3	3	426.1372375488281	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2872	1	2.3425	1.8425	2.8425	0.055284								0	0	0	0.96208	1	702	702		0	0	1		+		23352	11120	14699	14785	22465	22465					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S3	3	426.1371765136719	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8315	1	2.8768	2.3768	3.3768	0.045237								0	0	0	0.96208	1	862	862		0	0	1		+		23353	11120	14699	14785	22466	22466					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S3	3	426.13720703125	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7258	1	6.7397	6.2397	7.2397	0.013901								0	0	0	0.96208	1	2031	2031		0	0	1		+		23354	11120	14699	14785	22467	22467					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S3	3	426.1371154785156	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.428	1	8.4486	7.9486	8.9486	0.020599								0	0	0	0.96208	1	2549	2549		0	0	1		+		23355	11120	14699	14785	22468	22468					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S3	3	426.1375427246094	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5369	1	9.563	9.063	10.063	0.026101								0	0	0	0.96208	1	2886	2886		0	0	1		+		23356	11120	14699	14785	22469	22469					-0.23679953801115516
PEDEDDDDDDP	11	Unmodified	_PEDEDDDDDDP_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MSMS	HCT116MG_D190212_S3	3	426.1372375488281	3	426.137236	1275.38988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.05	1	10.082	9.5825	10.582	0.032559								0	0	0	0.96208	1	3039	3039		0	0	1		+		23357	11120	14699	14785	22470	22470					-0.23679953801115516
PEDMAVDDDPA	11	Unmodified	_PEDMAVDDDPA_					0	0	0			REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	MSMS	HCT116MG_D190212_S2	2	587.7325439453125	2	587.732068	1173.44958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.555	1	25.185	24.685	25.685	-0.36914								0	0	0	0.84073	1	9207	9207		27.629	2.2295	1		+		23358	11838	14700	14786	22471	22471					-0.13020309600779
PEDSLFMFPC	10	Unmodified	_PEDSLFMFPC_					0	0	0		nc|ENSG00000106410|O60393-2|NOBOX;ENSG00000106410|ENST00000467773|NOBOX	nc|ENSG00000106410|O60393-2|NOBOX	nc|ENSG00000106410|O60393-2|NOBOX	MSMS	HCT116MG_D190212_S1	1	395.8395690917969	3	395.836682	1184.48822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.442	1	16.442	15.942	16.942	0								0	0	0	0.95507	1	5534	5534		1.7423	0	1				23359	2077	14701	14787	22472	22472					-0.09664675499925579
PEEDEEEEIVI	11	Unmodified	_PEEDEEEEIVI_					0	0	0		MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant;MKS1|p.F377Lfs*53|1|0.3|ENSG00000011143|chr17:58208139-58208139|A/-|frameshift_variant;nc|ENSG00000011143|Q9NXB0-2|MKS1;ENSG00000011143|ENST00000393119|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1	MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	665.7987060546875	2	665.798462	1329.58237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.635	1	11.353	10.853	11.853	-0.28186								0	0	0	0.96208	1	3761	3761		0	0	1				23360	887	14702	14788	22473	22473					-0.06923586663151582
PEEKQEWWWLY	11	Unmodified	_PEEKQEWWWLY_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MSMS	HCT116MG_D190212_S1	1	797.3755493164062	2	797.372266	1592.72998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.503	1	38.503	38.003	39.003	0								0	0	0	0.95954	1	14417	14417		1.3295	0.9789	1				23361	956	14703	14789	22474	22474					-0.042676055477841146
PEELQKLKPL	10	Unmodified	_PEELQKLKPL_					0	0	0		tr|U7SLI3|U7SLI3_FUSNUADP-L-glycero-D-manno-heptose-6-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hldDPE=3SV=1	tr|U7SLI3|U7SLI3_FUSNUADP-L-glycero-D-manno-heptose-6-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hldDPE=3SV=1	tr|U7SLI3|U7SLI3_FUSNUADP-L-glycero-D-manno-heptose-6-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hldDPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	597.8566284179688	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.754	1	48.388	47.888	48.888	-0.3656								0	0	0	0.95648	1	18063	18063		3.2813	1.4371	1				23362	18337	14704	14790	22475	22475					0.11287116262769814
PEENAALGP	9	Unmodified	_PEENAALGP_					0	0	0			REV__ENST00000586107.1_1_19:19380531-19384159:-|nuORF	REV__ENST00000586107.1_1_19:19380531-19384159:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	897.4308471679688	1	897.431238	896.423961	1.0915	0.00097959	-0.07147	-6.414E-05	1.0201	0.00091545	897.4310170700483	29.248	1.3109	29.026	28.525	29.836	-0.22196					48	24	3	0	0	0	0.031089	1	10813	10813		85.272	0	1	14171000	+		23363	16654	14705	14791	22476	22476					-0.02839371270238189
PEENAALGP	9	Unmodified	_PEENAALGP_					0	0	0			REV__ENST00000586107.1_1_19:19380531-19384159:-|nuORF	REV__ENST00000586107.1_1_19:19380531-19384159:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	897.431238	896.423961	1.1863	0.0010646	-0.71878	-0.00064505	0.46749	0.00041954	897.4302926768421	29.137	0.87366	28.821	28.555	29.429	-0.31613	-0.14193	-0.00047789	NaN	85.272	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15938000	+		23364	16654	14705	14791							-0.02839371270238189
PEEPQALRPAK	11	Unmodified	_PEEPQALRPAK_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;ENST00000464624.6_1_20:57428320-57466719:+|nuORF;nc|ENSG00000087460|Q5JWF2-3|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MSMS	HCT116MG_D190212_S3	3	618.3423461914062	2	618.340769	1234.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.778	1	14.861	14.361	15.361	0.083271								0	0	0	0.93717	1	4784	4784		13.042	1.5478	1				23365	9394	14706	14792	22477	22477					0.05903873454803943
PEESSFGP	8	Unmodified	_PEESSFGP_					0	0	0			REV__ENST00000596403.1_1_19:38694578-38696877:+|nuORF	REV__ENST00000596403.1_1_19:38694578-38696877:+|nuORF	MSMS	HCT116MG_D190212_S2	2	425.1854553222656	2	425.184883	848.355213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.176	1	26.824	26.324	27.324	-0.35254								0	0	0	0.8837	1	9860	9860		9.3474	0	1		+		23366	16721	14707	14793	22478	22478					-0.07503035569936856
PEFLELYR	8	Unmodified	_PEFLELYR_					0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	MSMS	HCT116MG_D190212_S4	4	356.1912536621094	3	356.190442	1065.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.448	1	20.246	19.746	20.746	-0.20133								0	0	0	0.8837	1	7000	7000		1.4819	0	1				23367	2083	14708	14794	22479	22479					0.01934340586012695
PEFMLPVHF	9	Unmodified	_PEFMLPVHF_					0	0	0		PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	558.78125	2	558.78097	1115.54739	0.45828	0.00025608	0.02016	1.1265E-05	0.47844	0.00026734	558.780975139124	57.152	0.20755	56.973	56.844	57.051	-0.17904					6	3	2	0	0	0	0.031005	1	22087	22087		85.357	69.208	1	55202000			23368	1715	14709	14795	22480	22480					-0.00576411423458012
PEFVFEHGY	9	Unmodified	_PEFVFEHGY_					0	0	0		nc|ENSG00000020256|Q9NTW7|ZFP64;ENST00000477786.5_1_20:50705508-50792496:-|nuORF;nc|ENSG00000020256|Q9NTW7-3|ZFP64;ZFP64|p.D633Lfs*3|1|0.04|ENSG00000020256|chr20:52152295-52152296|-/ATTCAAG|frameshift_variant;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	MULTI-MSMS	HCT116MG_D190212_S2	2	562.7562866210938	2	562.756007	1123.49746	0.55229	0.0003108	0.50601	0.00028476	1.0583	0.00059556	562.756245923463	47.298	0.20646	47.176	47.078	47.285	-0.12175					6	3	2	0	0	0	0.0066233	1	18057	18057		123.45	95.822	1	16085000			23369	9368	14710	14796	22481	22481					-0.05934822827748576
PEGLIIYDKKR	11	Unmodified	_PEGLIIYDKKR_					0	0	0			REV__ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant	REV__ZDBF2|p.K1728Nfs*5|1|0.48|ENSG00000204186|chr2:206309704-206309704|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	666.3425903320312	2	666.387719	1330.76089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.744	1	34.358	33.858	34.858	-0.38599								0	0	0	0.95636	1	12699	12699		2.9952	0	1		+		23370	14185	14711	14797	22482	22482					0.10873592557072698
PEGLPPISDV	10	Unmodified	_PEGLPPISDV_					0	0	0		nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;ENST00000374933.3_1_1:21219982-21267875:-|nuORF;EIF4G3|p.A945Qfs*16|1|0.25|ENSG00000075151|chr1:20864482-20864482|T/-|frameshift_variant;EIF4G3|p.I1064Nfs*6|1|0.32|ENSG00000075151|chr1:20855052-20855053|-/T|frameshift_variant;EIF4G3|p.F1258Lfs*2|1|0.43|ENSG00000075151|chr1:20840975-20840975|A/-|frameshift_variant	nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432-4|EIF4G3	MSMS	HCT116MG_D190212_S4	4	512.2699584960938	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.943	1	30.579	30.079	31.079	-0.36416								0	0	0	0.94107	1	11210	11210		6.7232	0.51738	1				23371	1309	14712	14798	22483	22483					0.018063304864767815
PEGPPGEY	8	Unmodified	_PEGPPGEY_					0	0	0		ENST00000377263.5_1_1:9909906-9910146:-|nuORF	ENST00000377263.5_1_1:9909906-9910146:-|nuORF	ENST00000377263.5_1_1:9909906-9910146:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	423.1874694824219	2	423.187426	844.360298	0.045375	1.9202E-05	0.39564	0.00016743	0.44101	0.00018663	423.1874223789974	20.429	0.42401	20.05	19.865	20.289	-0.37949					13	7	3	0	0	0	0.66848	1	7147	7147		26.341	0	1	24290000			23372	7524	14713	14799	22484	22484					-0.06810731707321338
PEGTNAYRSY	10	Unmodified	_PEGTNAYRSY_					0	0	0		ENSG00000115386|ENST00000233735|REG1A;ENSG00000172023|ENST00000305089|REG1B	ENSG00000115386|ENST00000233735|REG1A	ENSG00000115386|ENST00000233735|REG1A	MSMS	HCT116MG_D190212_S1	1	579.2631225585938	2	579.264727	1156.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.605	1	15.605	15.105	16.105	0								0	0	0	0.92607	1	5196	5196		10.074	2.1638	1				23373	2465	14714	14800	22485	22485					-0.05709527292742678
PEGTNAYRSY	10	Unmodified	_PEGTNAYRSY_					0	0	0		ENSG00000115386|ENST00000233735|REG1A;ENSG00000172023|ENST00000305089|REG1B	ENSG00000115386|ENST00000233735|REG1A	ENSG00000115386|ENST00000233735|REG1A	MSMS	HCT116MG_D190212_S2	2	579.2632446289062	2	579.264727	1156.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.773	1	15.438	14.938	15.938	-0.33451								0	0	0	0.89062	1	5264	5264		17.113	2.2746	1				23374	2465	14714	14800	22486	22486					-0.05709527292742678
PEIFTFDPLP	10	Unmodified	_PEIFTFDPLP_					0	0	0		ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	ENSG00000137331|ENST00000259874|IER3	MSMS	HCT116MG_D190212_S4	4	588.3031005859375	2	588.30279	1174.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.281	1	41.905	41.405	42.405	-0.37565								0	0	0	0.87399	1	15534	15534		19.257	7.6167	1				23375	3472	14715	14801	22487	22487					0.010714765546708804
PEIGVKSK	8	Unmodified	_PEIGVKSK_					0	0	0			REV__nc|ENSG00000172728|Q6P4F1-3|FUT10	REV__nc|ENSG00000172728|Q6P4F1-3|FUT10	MULTI-SECPEP	HCT116MG_D190212_S1	1	429.2307434082031	2	429.258185	856.501818	-0.11605	-4.9814E-05	-0.54962	-0.00023593	-0.66567	-0.00028574	429.2567727676998	44.27	0.58242	44.27	43.986	44.568	0					18	10	3	0	0	0	0.32676	1	16755	16755		4.756	2.4533	1	9836600	+		23376	16231	14716	14802	22488	22488					0.06782686385804482
PEIPGARR	8	Unmodified	_PEIPGARR_					0	0	0		ENST00000521746.5_1_8:38758753-38758924:+|nuORF	ENST00000521746.5_1_8:38758753-38758924:+|nuORF	ENST00000521746.5_1_8:38758753-38758924:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	448.2591857910156	2	448.259051	894.503549	0.21742	9.7461E-05	0.10899	4.8856E-05	0.32641	0.00014632	448.2589812362623	48.811	0.75887	48.668	48.439	49.198	-0.1437					28	14	3	0	0	0	0.82475	1	18650	18650		8.5933	0.68312	1	342740000			23377	8559	14717	14803	22489	22489					0.05207740194430244
PEIWYSWRYQL	11	Unmodified	_PEIWYSWRYQL_					0	0	0		EPHX4|p.F105I|1|0.3|ENSG00000172031|chr1:92032586-92032586|T/A|missense_variant	EPHX4|p.F105I|1|0.3|ENSG00000172031|chr1:92032586-92032586|T/A|missense_variant	EPHX4|p.F105I|1|0.3|ENSG00000172031|chr1:92032586-92032586|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	770.879638671875	2	770.882801	1539.75105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.023	1	42.951	42.451	43.451	-0.072166								0	0	0	0.95196	1	16301	16301		5.2969	2.0156	1				23378	9138	14718	14804	22490	22490					0.002764045517096747
PEKEFETR	8	Unmodified	_PEKEFETR_					0	0	0			REV__ENST00000467220.1_1_7:158683991-158695375:+|nuORF	REV__ENST00000467220.1_1_7:158683991-158695375:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2593383789062	2	518.258914	1034.50327	0.1779	9.22E-05	-0.28078	-0.00014552	-0.10288	-5.3319E-05	518.2586211342646	18.136	0.46988	17.78	17.493	17.963	-0.35647					10	8	2	0	0	0	0.69106	1	6256	6256		24.021	0	1	3323800	+		23379	11848	14719	14805	22491	22491					-0.012597243161053484
PEKEFETR	8	Unmodified	_PEKEFETR_					0	0	0			REV__ENST00000467220.1_1_7:158683991-158695375:+|nuORF	REV__ENST00000467220.1_1_7:158683991-158695375:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	518.258914	1034.50327	0.1779	9.22E-05	-0.28078	-0.00014552	-0.10288	-5.3319E-05	518.2586211342646	18.136	0.46988	17.78	17.493	17.963	-0.35647	0	0	NaN	24.021	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3323800	+		23380	11848	14719	14805							-0.012597243161053484
PEKLVTYVPQY	11	Unmodified	_PEKLVTYVPQY_					0	0	0		ENST00000315367.3_1_8:96167120-96167168:+|nuORF	ENST00000315367.3_1_8:96167120-96167168:+|nuORF	ENST00000315367.3_1_8:96167120-96167168:+|nuORF	MSMS	HCT116MG_D190212_S2	2	668.8582153320312	2	668.861003	1335.70745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.83	1	42.76	42.26	43.26	-0.069984								0	0	0	0.9465	1	16222	16222		8.1555	1.4324	1				23381	7082	14720	14806	22492	22492					0.05302795054581111
PEKVDVIVVSS	11	Unmodified	_PEKVDVIVVSS_					0	0	0			REV__TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant	REV__TP53BP1|p.D1461Rfs*12|1|0.37|ENSG00000067369|chr15:43420584-43420591|GAGAGTCA/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	391.2253112792969	3	391.223811	1170.6496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.243	1	40.243	39.743	40.743	0								0	0	0	0.95636	1	15120	15120		1.2148	0.51716	1		+		23382	10729	14721	14807	22493	22493					0.07110533129139185
PEKWESVKL	9	Unmodified	_PEKWESVKL_					0	0	0		nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1;ENST00000574823.5_1_16:11935494-11935832:-|nuORF	nc|ENSG00000171490|O76021-2|RSL1D1	nc|ENSG00000171490|O76021-2|RSL1D1	MSMS	HCT116MG_D190212_S1	1	558.3092651367188	2	558.308406	1114.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.753	1	34.753	34.253	35.253	0								0	0	0	0.44802	1	12905	12905		31.268	0.6318	1				23383	5198	14722	14808	22494	22494					0.04954298648817712
PEKWTTPQE	9	Unmodified	_PEKWTTPQE_					0	0	0		nc|ENSG00000103313|O15553-3|MEFV;nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV	nc|ENSG00000103313|O15553-3|MEFV	nc|ENSG00000103313|O15553-3|MEFV	MULTI-SECPEP	HCT116MG_D190212_S2	2	558.3082885742188	2	558.272021	1114.52949	0.51047	0.00028498	0.29759	0.00016614	0.80806	0.00045112	558.2721457728645	34.842	0.20729	34.683	34.554	34.761	-0.15834					5	3	2	0	0	0	0.25656	1	12937	12937		9.3831	0	1	12923000			23384	1888	14723	14809	22495	22495					-0.023194551446067635
PELILYVAIT	10	Unmodified	_PELILYVAIT_					0	0	0		nc|ENSG00000135390|Q06055-2|ATP5MC2	nc|ENSG00000135390|Q06055-2|ATP5MC2	nc|ENSG00000135390|Q06055-2|ATP5MC2	MSMS	HCT116MG_D190212_S3	3	566.3383178710938	2	566.336633	1130.65871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.864	1	31.593	31.093	32.093	-0.27028								0	0	0	0.94339	1	11657	11657		6.2058	0.47393	1				23385	9467	14724	14810	22496	22496					0.0986092648547583
PELLFFAK	8	Unmodified	_PELLFFAK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S4	4	482.7781982421875	2	482.778754	963.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.413	1	57.119	56.619	57.619	-0.29465								0	0	0	0.62515	1	21550	21550		36.127	7.9538	1			+	23386	554	14725	14811	22497	22497					0.05972447425278915
PELRNNWPRRR	11	Unmodified	_PELRNNWPRRR_					0	0	0			REV__nc|ENSG00000162746|Q6BAA4-5|FCRLB	REV__nc|ENSG00000162746|Q6BAA4-5|FCRLB	MULTI-SECPEP	HCT116MG_D190212_S1	1	746.9105224609375	2	747.413457	1492.81236	0.89382	0.00066806	-3.2457	-0.0024259	-2.3519	-0.0017578	747.4111858829983	34.883	0.20797	34.883	34.701	34.909	0					5	3	2	0	0	0	0.36367	1	12963	12963		5.7319	3.2334	1	11866000	+		23387	17187	14726	14812	22498	22498					0.08566774094310858
PELSGTMHEAW	11	Unmodified	_PELSGTMHEAW_					0	0	0			REV__ENST00000262585.6_3_8:142204575-142204977:+|nuORF	REV__ENST00000262585.6_3_8:142204575-142204977:+|nuORF	MSMS	HCT116MG_D190212_S3	3	629.4437866210938	2	629.282063	1256.54957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.823	1	41.521	41.021	42.021	-0.30257								0	0	0	0.95113	1	15561	15561		5.7319	0.97584	1		+		23388	14640	14727	14813	22499	22499					-0.06844027476313386
PEMPLPLI	8	Unmodified	_PEMPLPLI_					0	0	0		GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant;GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant;GRID2IP|p.S1123Lfs*62|1|0.41|ENSG00000215045|chr7:6501814-6501814|G/-|frameshift_variant;ENSG00000215045|ENST00000457091|GRID2IP	GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	455.26007080078125	2	455.259339	908.504126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.389	1	19.389	18.889	19.889	0								0	0	0	0.8837	1	6721	6721		10.183	4.423	1				23389	9198	14728	14814	22500	22500					0.046213987992587136
PEMRRRWRRRR	11	Unmodified	_PEMRRRWRRRR_					0	0	0			REV__ENSG00000135636|ENST00000410020|DYSF	REV__ENSG00000135636|ENST00000410020|DYSF	MSMS	HCT116MG_D190212_S1	1	827.9735717773438	2	827.974025	1653.9335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.841	1	48.841	48.341	49.341	0								0	0	0	0.96157	1	18596	18596		0.26902	0.26902	1		+		23390	10430	14729	14815	22501	22501					0.13268698256001699
PEMWDQFLGA	10	Unmodified	_PEMWDQFLGA_					0	0	0			REV__ENST00000490302.1_1_2:42282099-42284788:+|nuORF	REV__ENST00000490302.1_1_2:42282099-42284788:+|nuORF	MSMS	HCT116MG_D190212_S2	2	597.45458984375	2	597.268424	1192.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.56	1	36.445	35.945	36.945	-0.11478								0	0	0	0.8981	1	13675	13675		16.149	2.2431	1		+		23391	16029	14730	14816	22502	22502					-0.06626511016679615
PENMAPFRLP	10	Unmodified	_PENMAPFRLP_					0	0	0			REV__NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant	REV__NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	391.2037048339844	3	391.202465	1170.58556	0.048151	1.8837E-05	2.5464	0.00099615	2.5945	0.001015	391.2034364182731	23.242	0.25977	22.856	22.726	22.986	-0.3852					6	4	2	0	0	0	0.82332	1	8312	8312		5.7834	0	1	8883500	+		23392	12420	14731	14817	22503	22503					0.007094744911910311
PENVAMEWSPF	11	Unmodified	_PENVAMEWSPF_					0	0	0			REV__TCTA|p.A94V|1|0.27|ENSG00000145022|chr3:49414831-49414831|C/T|missense_variant	REV__TCTA|p.A94V|1|0.27|ENSG00000145022|chr3:49414831-49414831|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	653.7947387695312	2	653.792263	1305.56997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.331	1	37.948	37.448	38.448	-0.38283								0	0	0	0.94851	1	14044	14044		7.1017	0.37856	1		+		23393	17624	14732	14818	22504	22504					-0.07058856816524894
PEPAKSAPAPK	11	Unmodified	_PEPAKSAPAPK_					0	0	0		ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MSMS	HCT116MG_D190212_S1	1	546.8060913085938	2	546.806031	1091.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.392	1	15.392	14.892	15.892	0								0	0	0	0.93607	1	5110	5110		13.615	2.8154	1				23394	2857	14733	14819	22505	22505					0.05537414506011373
PEPPEPVLGSP	11	Unmodified	_PEPPEPVLGSP_					0	0	0			REV__AATK|p.F1101Sfs*3|1|0.46|ENSG00000181409|chr17:81120634-81120634|A/-|frameshift_variant	REV__AATK|p.F1101Sfs*3|1|0.46|ENSG00000181409|chr17:81120634-81120634|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	559.2605590820312	2	559.790047	1117.56554	0.35312	0.00019767	0.073773	4.1297E-05	0.42689	0.00023897	559.7900248544343	19.159	0.15567	19.228	19.135	19.291	0.069157					4	2	2	0	0	0	0.34807	1	6577	6577		8.1555	0	1	1186000	+		23395	9814	14734	14820	22506	22506					0.011460020322374476
PEPRRRRRKKS	11	Unmodified	_PEPRRRRRKKS_					0	0	0			REV__ENSG00000129682|ENST00000315930|FGF13	REV__ENSG00000129682|ENST00000315930|FGF13	MSMS	HCT116MG_D190212_S4	4	733.449462890625	2	733.450374	1464.8862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.58	1	43.206	42.706	43.706	-0.37433								0	0	0	0.96121	1	16024	16024		1.3295	0	1		+		23396	11898	14735	14821	22507	22507					0.17234742256664504
PEQKEGDTKDK	11	Unmodified	_PEQKEGDTKDK_					0	0	0		ARFRP1-ADRM1|1|fusion;ENSG00000130706|ENST00000253003|ADRM1	ARFRP1-ADRM1|1|fusion	ARFRP1-ADRM1|1|fusion	MULTI-MSMS	HCT116MG_D190212_S1	1	637.8152465820312	2	637.814781	1273.61501	0.77889	0.00049679	-0.027968	-1.7838E-05	0.75092	0.00047895	637.8147862808369	14.52	0.31189	14.52	14.39	14.702	0					12	5	3	0	0	0	0.39766	2	4761	4761;4767		55.235	16.62	1	24873000			23397	169	14736	14822	22508;22509	22508					-0.010853347496322385
PEQKIIKRVIA	11	Unmodified	_PEQKIIKRVIA_					0	0	0		ENST00000489381.1_1_7:110305061-111030646:-|nuORF;nc|ENSG00000184903|Q96T52-2|IMMP2L;ENSG00000184903|ENST00000405709|IMMP2L	ENST00000489381.1_1_7:110305061-111030646:-|nuORF	ENST00000489381.1_1_7:110305061-111030646:-|nuORF	MSMS	HCT116MG_D190212_S2	2	432.2801208496094	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.731	1	38.647	38.147	39.147	-0.084618								0	0	0	0.95954	1	14555	14555		1.3296	0.21989	1				23398	5788	14737	14823	22510	22510					0.1781017569069263
PEQKVEGGSPG	11	Unmodified	_PEQKVEGGSPG_					0	0	0			REV__ENST00000367178.7_2_6:155054556-155054685:+|nuORF	REV__ENST00000367178.7_2_6:155054556-155054685:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	542.2661743164062	2	542.767103	1083.51965	0.5196	0.00028202	-1.4464	-0.00078505	-0.92678	-0.00050303	543.2665006591651	27.676	0.14622	27.355	27.252	27.398	-0.32157					4	2	2	0	0	0	0.35748	1	9929	9929		12.241	0	1	1211000	+		23399	15116	14738	14824	22511	22511					-0.018766431499670944
PERARPPPP	9	Unmodified	_PERARPPPP_					0	0	0		ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MULTI-MSMS	HCT116MG_D190212_S3	3	509.26104736328125	2	508.785433	1015.55631	0.032934	1.6756E-05	-0.013204	-6.7178E-06	0.019731	1.0039E-05	508.78551052915185	16.958	0.46823	17.042	16.912	17.381	0.084467					11	8	2	0	0	0	0.49914	1	5768	5768		16.942	0	1	2401600			23400	5403	14739	14825	22512	22512					0.04915698257218537
PERWSAFFP	9	Unmodified	_PERWSAFFP_					0	0	0			REV__ENST00000360338.3_1_19:57791890-57791977:+|nuORF	REV__ENST00000360338.3_1_19:57791890-57791977:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	569.29296875	2	568.779816	1135.54508	0.48674	0.00027685	-0.19293	-0.00010974	0.29381	0.00016711	568.7795612442305	29.679	0.20808	29.33	29.189	29.397	-0.34921					5	3	2	0	0	0	0.24622	1	10674	10674		7.2892	0	1	964430	+		23401	15081	14740	14826	22513	22513					-0.01727123836917599
PESEQPRAFEL	11	Unmodified	_PESEQPRAFEL_					0	0	0			REV__ENST00000485897.5_1_20:62371738-62373703:+|nuORF	REV__ENST00000485897.5_1_20:62371738-62373703:+|nuORF	MSMS	HCT116MG_D190212_S4	4	434.8819885253906	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7136	1	8.4928	7.9928	8.9928	-0.22071								0	0	0	0.96149	1	2662	2662		0.08335	0	1		+		23402	11811	14741	14827	22514	22514					-0.013567270243584062
PESPLLSFPHS	11	Unmodified	_PESPLLSFPHS_					0	0	0			REV__PEAR1|p.R45H|1|0.39|ENSG00000187800|chr1:156904780-156904780|G/A|missense_variant	REV__PEAR1|p.R45H|1|0.39|ENSG00000187800|chr1:156904780-156904780|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	606.167724609375	2	605.808771	1209.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.594	1	22.209	21.709	22.709	-0.3852								0	0	0	0.9465	1	8012	8012		8.1555	0.24537	1		+		23403	17406	14742	14828	22515	22515					0.006570932978547717
PESTQENQAE	10	Unmodified	_PESTQENQAE_					0	0	0			REV__nc|ENSG00000110768|P32780-2|GTF2H1	REV__nc|ENSG00000110768|P32780-2|GTF2H1	MULTI-MSMS	HCT116MG_D190212_S1	1	566.740478515625	2	566.741282	1131.46801	0.4807	0.00027243	-0.010541	-5.9741E-06	0.47016	0.00026646	566.7412464486675	17.025	0.57387	17.025	16.837	17.411	0					26	10	4	0	0	0	0.055088	1	5764	5764		83.429	9.2291	1	17345000	+		23404	11408	14743	14829	22516	22516					-0.09246431634574037
PESTQENQAE	10	Unmodified	_PESTQENQAE_					0	0	0			REV__nc|ENSG00000110768|P32780-2|GTF2H1	REV__nc|ENSG00000110768|P32780-2|GTF2H1	MULTI-MSMS	HCT116MG_D190212_S2	2	566.7416381835938	2	566.741282	1131.46801	0.44694	0.0002533	-0.53551	-0.0003035	-0.088573	-5.0198E-05	566.7412156595793	17.248	0.26096	16.899	16.769	17.03	-0.34933					10	4	3	0	0	0	0.35357	1	5895	5895		45.7	5.4604	1	5304700	+		23405	11408	14743	14829	22517	22517					-0.09246431634574037
PESTQENQAE	10	Unmodified	_PESTQENQAE_					0	0	0			REV__nc|ENSG00000110768|P32780-2|GTF2H1	REV__nc|ENSG00000110768|P32780-2|GTF2H1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	566.741282	1131.46801	0.4807	0.00027243	-0.010541	-5.9741E-06	0.47016	0.00026646	566.7412464486675	17.025	0.57387	17.025	16.837	17.411	0	0.062864	5.8303E-05	NaN	83.429	26	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17345000	+		23406	11408	14743	14829							-0.09246431634574037
PESTQENQAE	10	Unmodified	_PESTQENQAE_					0	0	0			REV__nc|ENSG00000110768|P32780-2|GTF2H1	REV__nc|ENSG00000110768|P32780-2|GTF2H1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	566.741282	1131.46801	0.44694	0.0002533	-0.53551	-0.0003035	-0.088573	-5.0198E-05	566.7412156595793	17.248	0.26096	16.899	16.769	17.03	-0.34933	-0.062864	-0.00053674	NaN	83.429	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5304700	+		23407	11408	14743	14829							-0.09246431634574037
PESTRAPKSP	10	Unmodified	_PESTRAPKSP_					0	0	0			REV__ENST00000354588.7_1_11:62430524-62435168:-|nuORF	REV__ENST00000354588.7_1_11:62430524-62435168:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	535.2857666015625	2	535.285463	1068.55637	0.54933	0.00029405	-0.065217	-3.491E-05	0.48411	0.00025914	535.2854662044108	28.461	0.46916	28.255	28.02	28.489	-0.20593					10	8	2	0	0	0	0.6277	1	10314	10314		26.268	0.86883	1	2600000	+		23408	15032	14744	14830	22518	22518					0.024836534665837462
PETLYSYRKRL	11	Unmodified	_PETLYSYRKRL_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MSMS	HCT116MG_D190212_S1	1	713.3941650390625	2	713.396076	1424.7776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.853	1	22.853	22.353	23.353	0								0	0	0	0.95581	1	8111	8111		3.2813	0.28607	1		+		23409	9934	14745	14831	22519	22519					0.08220093443037513
PEWKGRGWK	9	Unmodified	_PEWKGRGWK_					0	0	0			REV__DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	REV__DCLK3|p.R110Gfs*69|3|0.36|ENSG00000163673|chr3:36738333-36738333|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	381.8741149902344	3	381.873447	1142.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.4412	1	1.428	0.92797	1.928	-0.013221								0	0	0	0.76973	1	470	470		0.96228	0	1		+		23410	10339	14746	14832	22520	22520					0.03291673665603412
PEYLIHAF	8	Unmodified	_PEYLIHAF_					0	0	0		ENST00000554683.1_1_14:54894534-54903393:-|nuORF;CNIH1|p.Y132Tfs*6|4|0.3|ENSG00000100528|chr14:54430274-54430274|A/-|frameshift_variant;ENSG00000100528|ENST00000216416|CNIH1	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	495.25836181640625	2	495.258185	988.501818	0.36384	0.00018019	-0.062058	-3.0735E-05	0.30178	0.00014946	495.2582297006604	51.634	0.20521	51.45	51.321	51.527	-0.18369					8	3	3	0	0	0	0.065436	1	19841	19841		106.85	74.729	1	19137000			23411	490	14747	14833	22521	22521					0.007106863857984536
PEYLIHAF	8	Unmodified	_PEYLIHAF_					0	0	0		ENST00000554683.1_1_14:54894534-54903393:-|nuORF;CNIH1|p.Y132Tfs*6|4|0.3|ENSG00000100528|chr14:54430274-54430274|A/-|frameshift_variant;ENSG00000100528|ENST00000216416|CNIH1	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	MSMS	HCT116MG_D190212_S3	3	495.25811767578125	2	495.258185	988.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.903	1	51.594	51.094	52.094	-0.30927								0	0	0	0.31385	1	19608	19608		53.576	28.902	1				23412	490	14747	14833	22522	22522					0.007106863857984536
PEYLIHAF	8	Unmodified	_PEYLIHAF_					0	0	0		ENST00000554683.1_1_14:54894534-54903393:-|nuORF;CNIH1|p.Y132Tfs*6|4|0.3|ENSG00000100528|chr14:54430274-54430274|A/-|frameshift_variant;ENSG00000100528|ENST00000216416|CNIH1	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	MSMS	HCT116MG_D190212_S4	4	495.2576599121094	2	495.258185	988.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.982	1	51.637	51.137	52.137	-0.34538								0	0	0	0.8837	1	19364	19364		13.508	0.97634	1				23413	490	14747	14833	22523	22523					0.007106863857984536
PEYLIHAF	8	Unmodified	_PEYLIHAF_					0	0	0		ENST00000554683.1_1_14:54894534-54903393:-|nuORF;CNIH1|p.Y132Tfs*6|4|0.3|ENSG00000100528|chr14:54430274-54430274|A/-|frameshift_variant;ENSG00000100528|ENST00000216416|CNIH1	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	ENST00000554683.1_1_14:54894534-54903393:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	495.258185	988.501818	0.26365	0.00013057	-0.01278	-6.3295E-06	0.25087	0.00012424	495.2580055643595	51.824	0.20938	51.515	51.384	51.594	-0.30927	0.032504	1.8645E-05	NaN	106.85	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4872900			23414	490	14747	14833							0.007106863857984536
PFAPTPVP	8	Unmodified	_PFAPTPVP_					0	0	0			REV__LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	REV__LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	413.2270812988281	2	413.228897	824.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.57	1	26.57	26.07	27.07	0								0	0	0	0.8837	1	9606	9606		14.582	3.7578	1		+		23415	14034	14748	14834	22524	22524					0.02399629811327486
PFCCCGEE	8	Unmodified	_PFCCCGEE_					0	0	0			REV__nc|ENSG00000129474|Q96IF1-2|AJUBA	REV__nc|ENSG00000129474|Q96IF1-2|AJUBA	MSMS	HCT116MG_D190212_S3	3	444.4787902832031	2	444.140249	886.265946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.291	1	12.354	11.854	12.854	0.06246								0	0	0	0.8837	1	3823	3823		0	0	1		+		23416	11892	14749	14835	22525	22525					-0.18173653116980404
PFCCCGEE	8	Unmodified	_PFCCCGEE_					0	0	0			REV__nc|ENSG00000129474|Q96IF1-2|AJUBA	REV__nc|ENSG00000129474|Q96IF1-2|AJUBA	MSMS	HCT116MG_D190212_S4	4	444.4713134765625	2	444.140249	886.265946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.401	1	13.236	12.736	13.736	-0.16496								0	0	0	0.8837	1	4201	4201		0.79363	0.10326	1		+		23417	11892	14749	14835	22526	22526					-0.18173653116980404
PFCHLPGSP	9	Unmodified	_PFCHLPGSP_					0	0	0			REV__ENST00000263280.10_1_19:47222986-47223193:-|nuORF	REV__ENST00000263280.10_1_19:47222986-47223193:-|nuORF	MSMS	HCT116MG_D190212_S2	2	477.7295837402344	2	477.728738	953.442923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.143	1	19.768	19.268	20.268	-0.37503								0	0	0	0.61599	1	7025	7025		23.148	1.4018	1		+		23418	14650	14750	14836	22527	22527					-0.03566113180181674
PFCHLPGSP	9	Unmodified	_PFCHLPGSP_					0	0	0			REV__ENST00000263280.10_1_19:47222986-47223193:-|nuORF	REV__ENST00000263280.10_1_19:47222986-47223193:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	477.7295837402344	2	477.728738	953.442923	0.14898	7.1171E-05	1.3618	0.00065057	1.5108	0.00072174	477.7297584137258	20.062	0.46929	19.687	19.558	20.027	-0.37503					10	8	2	0	0	0	0.22781	1	7025	7025		23.148	7.3012	1	7745100	+		23419	14650	14750	14836	22528	22528					-0.03566113180181674
PFFTALRQKKI	11	Unmodified	_PFFTALRQKKI_					0	0	0			REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	MSMS	HCT116MG_D190212_S1	1	674.9078979492188	2	674.908622	1347.80269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.553	1	40.553	40.053	41.053	0								0	0	0	0.95581	1	15246	15246		3.2813	0	1		+		23420	11973	14751	14837	22529	22529					0.14270193036259116
PFGGSGSP	8	Unmodified	_PFGGSGSP_					0	0	0			REV__nc|ENSG00000124789|P49790-2|NUP153	REV__nc|ENSG00000124789|P49790-2|NUP153	MULTI-MSMS	HCT116MG_D190212_S2	2	705.3217163085938	1	705.320231	704.312954	1.1087	0.00078199	0.3181	0.00022436	1.4268	0.0010063	705.3202738966613	36.276	0.51785	36.148	35.916	36.434	-0.12799					12	9	2	0	0	0	0.60268	1	13555	13555		32.117	0	1	22403000	+		23421	11798	14752	14838	22530	22530					-0.05102966187655511
PFGGSGSP	8	Unmodified	_PFGGSGSP_					0	0	0			REV__nc|ENSG00000124789|P49790-2|NUP153	REV__nc|ENSG00000124789|P49790-2|NUP153	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	705.320231	704.312954	0.48341	0.00034096	-0.13964	-9.8491E-05	0.34377	0.00024247	705.3200138173991	36.472	0.41619	36.171	35.885	36.301	-0.30113	0.011432	-0.00010086	NaN	32.117	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3811700	+		23422	11798	14752	14838							-0.05102966187655511
PFGRPRVGWLG	11	Unmodified	_PFGRPRVGWLG_					0	0	0		ENST00000572585.5_1_17:909322-915797:-|nuORF	ENST00000572585.5_1_17:909322-915797:-|nuORF	ENST00000572585.5_1_17:909322-915797:-|nuORF	MSMS	HCT116MG_D190212_S2	2	621.29931640625	2	621.348732	1240.68291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.009	1	17.653	17.153	18.153	-0.35647								0	0	0	0.94416	1	6164	6164		9.3831	0.63772	1				23423	8904	14753	14839	22531	22531					0.07219624482354448
PFHPLIHPII	10	Unmodified	_PFHPLIHPII_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|225|1|anti-sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|225|1|anti-sense	MSMS	HCT116MG_D190212_S3	3	592.35400390625	2	592.352951	1182.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.437	1	36.136	35.636	36.636	-0.30113								0	0	0	0.95179	1	13463	13463		4.3292	0.38484	1		+		23424	16875	14754	14840	22532	22532					0.10731178399009877
PFHPLIHPII	10	Unmodified	_PFHPLIHPII_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|225|1|anti-sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|225|1|anti-sense	MSMS	HCT116MG_D190212_S4	4	592.3179931640625	2	592.352951	1182.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.733	1	36.348	35.848	36.848	-0.38486								0	0	0	0.95179	1	13454	13454		4.3292	1.594	1		+		23425	16875	14754	14840	22533	22533					0.10731178399009877
PFHWICQP	8	Unmodified	_PFHWICQP_					0	0	0		ENST00000578846.5_1_17:80018575-80018836:-|nuORF;ENSG00000169718|ENST00000306796|DUS1L	ENST00000578846.5_1_17:80018575-80018836:-|nuORF	ENST00000578846.5_1_17:80018575-80018836:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	514.2200317382812	2	514.244555	1026.47456	0.27515	0.00014149	-1.3935	-0.00071659	-1.1183	-0.00057509	514.2437241827962	19.065	0.31265	19.065	18.871	19.183	0					10	5	2	0	0	0	0.28275	1	6629	6629		19.439	0	1	4026500			23426	5089	14755	14841	22534	22534					-0.03762120426245019
PFKHPNLP	8	Unmodified	_PFKHPNLP_					0	0	0		nc|nan|A6NFR6|C5orf60	nc|nan|A6NFR6|C5orf60	nc|nan|A6NFR6|C5orf60	MSMS	HCT116MG_D190212_S4	4	475.2650451660156	2	475.266345	948.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.163	1	38.782	38.282	39.282	-0.38055								0	0	0	0.8837	1	14380	14380		5.7604	0.52976	1				23427	9685	14756	14842	22535	22535					0.04181812342562807
PFKVYHYQF	9	Unmodified	_PFKVYHYQF_					0	0	0		ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	MSMS	HCT116MG_D190212_S3	3	410.2105712890625	3	410.209836	1227.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.553	1	49.237	48.737	49.737	-0.31596								0	0	0	0.76877	1	18663	18663		2.9952	0.90923	1				23428	4816	14757	14843	22536	22536					0.002980222312544356
PFLAKKIM	8	Unmodified	_PFLAKKIM_					0	0	0			REV__ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	REV__ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	474.79254150390625	2	474.290974	946.567395	0.34545	0.00016384	-0.21759	-0.0001032	0.12786	6.0645E-05	474.29074881682317	45.033	1.4052	44.724	44.265	45.67	-0.30926					63	30	3	0	0	0	0.86388	1	16715	16715		2.8892	0	1	17552000	+		23429	9871	14758	14844	22537	22537					0.09197384307151424
PFLAKKIM	8	Unmodified	_PFLAKKIM_					0	0	0			REV__ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	REV__ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	474.7546691894531	2	474.290974	946.567395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.742	1	49.38	48.88	49.88	-0.36213								0	0	0	0.8837	1	18461	18461		2.8892	0	1		+		23430	9871	14758	14844	22538	22538					0.09197384307151424
PFLAKKIM	8	Unmodified	_PFLAKKIM_					0	0	0			REV__ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	REV__ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	474.290974	946.567395	0.42229	0.00020029	-0.33291	-0.0001579	0.089376	4.239E-05	474.29072799103284	45.147	1.4103	44.774	44.287	45.697	-0.37266	0.22204	-8.7567E-05	NaN	2.8892	88	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29670000	+		23431	9871	14758	14844							0.09197384307151424
PFLGIGLL	8	Unmodified	_PFLGIGLL_					0	0	0		ENST00000539708.5_1_12:16513351-16516972:+|nuORF;MGST1|p.F135Lfs*15|2|0.15|ENSG00000008394|chr12:16363972-16363972|T/-|frameshift_variant;ENSG00000008394|ENST00000396210|MGST1	ENST00000539708.5_1_12:16513351-16516972:+|nuORF	ENST00000539708.5_1_12:16513351-16516972:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	414.7615966796875	2	415.262739	828.510926	-0.094769	-3.9354E-05	1.158	0.00048087	1.0632	0.00044152	415.26333319009166	48.013	0.31261	47.697	47.462	47.775	-0.31596					8	5	2	0	0	0	0.33364	1	18043	18043		0	0	1	3619800			23432	863	14759	14845	22539	22539					0.08981079742136444
PFLLLLVC	8	Unmodified	_PFLLLLVC_					0	0	0		ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	MSMS	HCT116MG_D190212_S2	2	459.279296875	2	459.280075	916.545597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.659	1	54.47	53.97	54.97	-0.1894								0	0	0	0.86899	1	21050	21050		17.087	0	1				23433	5385	14760	14846	22540	22540					0.08398579558581787
PFLLRRLKSDV	11	Unmodified	_PFLLRRLKSDV_					0	0	0		nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	nc|ENSG00000119969|Q9NRZ9-6|HELLS	MSMS	HCT116MG_D190212_S1	1	448.6108093261719	3	448.610111	1342.8085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.237	1	54.237	53.737	54.737	0								0	0	0	0.95976	1	20792	20792		1.2148	0.70888	1				23434	2676	14761	14847	22541	22541					0.15081291547903675
PFLRINRIT	9	Unmodified	_PFLRINRIT_					0	0	0			REV__RYR3|p.T1637I|1|0.21|ENSG00000198838|chr15:33662440-33662440|C/T|missense_variant	REV__RYR3|p.T1637I|1|0.21|ENSG00000198838|chr15:33662440-33662440|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	377.2332458496094	3	377.232864	1128.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.948	1	45.847	45.347	46.347	-0.1014								0	0	0	0.7694	1	17488	17488		2.9952	0	1		+		23435	17488	14762	14848	22542	22542					0.11757106250843208
PFNFLKPI	8	Unmodified	_PFNFLKPI_					0	0	0			REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	488.30584716796875	2	488.286746	974.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.192	1	48.827	48.327	49.327	-0.365								0	0	0	0.8837	1	18238	18238		5.7604	2.8712	1		+		23436	17729	14763	14849	22543	22543					0.07064153662179251
PFPLQDLVP	9	Unmodified	_PFPLQDLVP_					0	0	0		nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7	nc|ENSG00000274211|O14512|SOCS7	nc|ENSG00000274211|O14512|SOCS7	MULTI-MSMS	HCT116MG_D190212_S1	1	513.2875366210938	2	513.286943	1024.55933	0.493	0.00025305	-0.41278	-0.00021188	0.080221	4.1176E-05	513.2870669223996	53.076	0.51308	53.076	52.845	53.359	0					14	9	2	0	0	0	0.59184	1	20358	20358		11.64	1.5664	1	14296000			23437	6675	14764	14850	22544	22544					0.04803528591378381
PFPLVNLP	8	Unmodified	_PFPLVNLP_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF;ENSG00000069399|ENST00000164227|BCL3	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	449.35986328125	2	448.765646	895.516739	0.088492	3.9712E-05	0.29205	0.00013106	0.38054	0.00017077	448.7655680236784	54.95	0.31387	54.659	54.56	54.874	-0.2918					8	5	2	0	0	0	0.30658	1	20852	20852		17.087	5.9721	1	1597100			23438	1218	14765	14851	22545	22545					0.06480178253787017
PFPPSSVTVP	10	Unmodified	_PFPPSSVTVP_					0	0	0			REV__nc|ENSG00000151651|P78325-2|ADAM8	REV__nc|ENSG00000151651|P78325-2|ADAM8	MULTI-MSMS	HCT116MG_D190212_S1	1	514.3110961914062	2	514.276575	1026.5386	0.19451	0.00010003	0.49683	0.00025551	0.69134	0.00035554	514.2768139613287	42.252	0.20744	42.252	42.123	42.33	0					6	3	2	0	0	0	0.84919	1	15879	15879		7.9102	0	1	24747000	+		23439	12606	14766	14852	22546	22546					0.026389382117031346
PFQSPELFN	9	Unmodified	_PFQSPELFN_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MSMS	HCT116MG_D190212_S2	2	539.8287963867188	2	539.763832	1077.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.348	1	57.172	56.672	57.672	-0.17584								0	0	0	0.76603	1	22142	22142		14.838	0.25658	1		+		23440	11778	14767	14853	22547	22547					-0.022545363107155936
PFREWLVWRA	10	Unmodified	_PFREWLVWRA_					0	0	0		TANC1|p.S816P|1|0.33|ENSG00000115183|chr2:159179099-159179099|T/C|missense_variant	TANC1|p.S816P|1|0.33|ENSG00000115183|chr2:159179099-159179099|T/C|missense_variant	TANC1|p.S816P|1|0.33|ENSG00000115183|chr2:159179099-159179099|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	680.3701782226562	2	680.369664	1358.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.007	1	46.636	46.136	47.136	-0.37038								0	0	0	0.96291	1	17373	17373		1.8442	0	1				23441	18255	14768	14854	22548	22548					0.05976180170910084
PFRKFVAT	8	Unmodified	_PFRKFVAT_					0	0	0			REV__ENSG00000039987|ENST00000553030|BEST2	REV__ENSG00000039987|ENST00000553030|BEST2	MSMS	HCT116MG_D190212_S1	1	483.2804870605469	2	483.281995	964.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.928	1	34.928	34.428	35.428	0								0	0	0	0.8837	1	12976	12976		5.2307	0	1		+		23442	10588	14769	14855	22549	22549					0.06574385376666214
PFSFQPPATV	10	Unmodified	_PFSFQPPATV_					0	0	0		ENSG00000088247|ENST00000600480|KHSRP	ENSG00000088247|ENST00000600480|KHSRP	ENSG00000088247|ENST00000600480|KHSRP	MSMS	HCT116MG_D190212_S4	4	364.19097900390625	3	364.190442	1089.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.424	1	58.135	57.635	58.635	-0.28879								0	0	0	0.95507	1	21958	21958		1.7423	0.41263	1				23443	1493	14770	14856	22550	22550					0.008303405859805935
PFTEEQLF	8	Unmodified	_PFTEEQLF_					0	0	0		nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF;ENSG00000155636|ENST00000286070|RBM45;nc|ENSG00000155636|Q8IUH3|RBM45	nc|ENSG00000155636|Q8IUH3-2|RBM45	nc|ENSG00000155636|Q8IUH3-2|RBM45	MSMS	HCT116MG_D190212_S3	3	505.7450866699219	2	505.745108	1009.47566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.067	1	54.775	54.275	55.275	-0.2918								0	0	0	0.8837	1	20880	20880		2.8892	0	1				23444	4257	14771	14857	22551	22551					-0.02869627576330913
PFTPKSDEKP	10	Unmodified	_PFTPKSDEKP_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-SECPEP	HCT116MG_D190212_S2	2	573.3614501953125	2	573.295496	1144.57644	0.55122	0.00031601	0.58306	0.00033426	1.1343	0.00065028	573.7969314146122	43.549	0.30875	43.476	43.355	43.664	-0.073372					11	5	3	0	0	0	0.3029	1	16591	16591		10.824	4.6181	1	13786000	+		23445	10885	14772	14858	22552	22552					0.009934044064948466
PFVGYSIWP	9	Unmodified	_PFVGYSIWP_					0	0	0			REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	MULTI-MSMS	HCT116MG_D190212_S2	2	532.77197265625	2	533.273835	1064.53312	0.43001	0.00022931	-3.6933	-0.0019695	-3.2633	-0.0017402	533.7732242548157	26.867	0.83765	26.514	26.137	26.975	-0.35254					16	14	2	0	0	0	0.41514	1	9820	9820		21.747	0.20967	1	19781000	+		23446	14085	14773	14859	22553	22553					0.0034325941990118736
PFVLMPIP	8	Unmodified	_PFVLMPIP_					0	0	0			REV__CLN6|p.A65P|1|0.07|ENSG00000128973|chr15:68218541-68218541|C/G|missense_variant	REV__CLN6|p.A65P|1|0.07|ENSG00000128973|chr15:68218541-68218541|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	457.26416015625	2	457.264425	912.514297	0.22053	0.00010084	-0.063217	-2.8907E-05	0.15731	7.1934E-05	457.26432278830026	45.263	1.1648	44.89	44.388	45.553	-0.37265					50	31	2	0	0	0	0.8029	1	16532	16532		11.114	4.3913	1	6903900	+		23447	10206	14774	14860	22554	22554					0.054540065244850666
PFYADAGP	8	Unmodified	_PFYADAGP_					0	0	0			REV__ENSG00000130309|ENST00000252599|COLGALT1	REV__ENSG00000130309|ENST00000252599|COLGALT1	MSMS	HCT116MG_D190212_S3	3	419.19140625	2	419.192511	836.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.85	1	29.613	29.113	30.113	-0.23655								0	0	0	0.8837	1	10858	10858		11.114	0.93107	1		+		23448	11914	14775	14861	22555	22555					-0.054261239821016716
PFYADAGP	8	Unmodified	_PFYADAGP_					0	0	0			REV__ENSG00000130309|ENST00000252599|COLGALT1	REV__ENSG00000130309|ENST00000252599|COLGALT1	MSMS	HCT116MG_D190212_S4	4	419.1908874511719	2	419.192511	836.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.9	1	29.543	29.043	30.043	-0.3571								0	0	0	0.8837	1	10817	10817		11.114	4.7604	1		+		23449	11914	14775	14861	22556	22556					-0.054261239821016716
PFYPPPPPP	9	Unmodified	_PFYPPPPPP_					0	0	0			REV__nc|ENSG00000157111|Q8WVE6-2|TMEM171	REV__nc|ENSG00000157111|Q8WVE6-2|TMEM171	MSMS	HCT116MG_D190212_S2	2	504.7618103027344	2	504.763104	1007.51165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.654	1	40.585	40.085	41.085	-0.069626								0	0	0	0.66309	1	15338	15338		20.871	2.7249	1		+		23450	12744	14776	14862	22557	22557					0.008198743911748352
PFYSVISNF	9	Unmodified	_PFYSVISNF_					0	0	0		ENST00000562215.1_1_16:20810515-20810692:-|nuORF	ENST00000562215.1_1_16:20810515-20810692:-|nuORF	ENST00000562215.1_1_16:20810515-20810692:-|nuORF	MSMS	HCT116MG_D190212_S1	1	537.2672729492188	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.354	1	47.354	46.854	47.854	0								0	0	0	0.3894	1	17990	17990		34.102	10.082	1				23451	8824	14777	14863	22558	22558					-0.010413483053298478
PFYTGEENCF	10	Unmodified	_PFYTGEENCF_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	HCT116MG_D190212_S3	3	603.744384765625	2	603.742239	1205.46993	0.5695	0.00034383	2.5916	0.0015646	3.1611	0.0019085	603.7435555387993	55.087	0.20935	54.796	54.665	54.874	-0.2918					5	3	2	0	0	0	0.87641	1	20917	20917		4.3292	0	1	4301600	+		23452	12615	14778	14864	22559	22559					-0.12459094150312922
PFYWCRPDT	9	Unmodified	_PFYWCRPDT_					0	0	0			REV__NYAP2|p.K316Rfs*57|1|0.27|ENSG00000144460|chr2:225582356-225582356|C/-|frameshift_variant	REV__NYAP2|p.K316Rfs*57|1|0.27|ENSG00000144460|chr2:225582356-225582356|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	592.8010864257812	2	592.763309	1183.51206	0.78872	0.00046753	1.4963	0.00088697	2.2851	0.0013545	592.7643624562289	47.432	0.25753	47.31	47.13	47.388	-0.12175					6	4	2	0	0	0	0.45867	1	18047	18047		19.257	3.4098	1	9700600	+		23453	17359	14779	14865	22560	22560					-0.07235073951278537
PGAAAAHL	8	Unmodified	_PGAAAAHL_					0	0	0		nc|ENSG00000146049|Q9UBP8|KAAG1	nc|ENSG00000146049|Q9UBP8|KAAG1	nc|ENSG00000146049|Q9UBP8|KAAG1	MULTI-MSMS	HCT116MG_D190212_S2	2	707.383544921875	1	707.3835	706.376223	1.068	0.00075551	-0.45174	-0.00031955	0.61629	0.00043595	707.3828173973982	22.324	0.72675	21.939	21.739	22.466	-0.38521					17	13	2	0	0	0	0.75115	1	7928	7928		17.087	0	1	8836500			23454	9492	14780	14866	22561	22561					0.011290193202285081
PGAAAAHL	8	Unmodified	_PGAAAAHL_					0	0	0		nc|ENSG00000146049|Q9UBP8|KAAG1	nc|ENSG00000146049|Q9UBP8|KAAG1	nc|ENSG00000146049|Q9UBP8|KAAG1	MULTI-MSMS	HCT116MG_D190212_S3	3	707.3845825195312	1	707.3835	706.376223	0.71362	0.00050481	-0.19433	-0.00013747	0.51929	0.00036734	707.3832136896398	21.807	0.68041	21.808	21.518	22.198	0.00074577					18	12	2	0	0	0	0.75115	1	7592	7592		17.087	0	1	7006200			23455	9492	14780	14866	22562	22562					0.011290193202285081
PGAAAAPSEQA	11	Unmodified	_PGAAAAPSEQA_					0	0	0			REV__ENST00000308724.9_1_14:24029153-24029485:-|nuORF	REV__ENST00000308724.9_1_14:24029153-24029485:-|nuORF	MSMS	HCT116MG_D190212_S3	3	485.2711486816406	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.153	1	26.025	25.525	26.525	-0.12795								0	0	0	0.86874	1	9370	9370		24.021	2.4836	1		+		23456	14825	14781	14867	22563	22563					-0.029165838672497557
PGAAAAPSEQA	11	Unmodified	_PGAAAAPSEQA_					0	0	0			REV__ENST00000308724.9_1_14:24029153-24029485:-|nuORF	REV__ENST00000308724.9_1_14:24029153-24029485:-|nuORF	MSMS	HCT116MG_D190212_S3	3	485.2356872558594	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.631	1	26.482	25.982	26.982	-0.14924								0	0	0	0.89642	1	9563	9563		20.454	0	1		+		23457	14825	14781	14867	22564	22564					-0.029165838672497557
PGAAAAPSEQA	11	Unmodified	_PGAAAAPSEQA_					0	0	0			REV__ENST00000308724.9_1_14:24029153-24029485:-|nuORF	REV__ENST00000308724.9_1_14:24029153-24029485:-|nuORF	MSMS	HCT116MG_D190212_S4	4	485.23541259765625	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.89	1	27.568	27.068	28.068	-0.32157								0	0	0	0.89642	1	10005	10005		20.454	1.1966	1		+		23458	14825	14781	14867	22565	22565					-0.029165838672497557
PGAAAARQER	10	Unmodified	_PGAAAARQER_					0	0	0			REV__ENST00000606448.1_1_13:103047018-103047243:+|nuORF	REV__ENST00000606448.1_1_13:103047018-103047243:+|nuORF	MSMS	HCT116MG_D190212_S3	3	513.7750244140625	2	513.775597	1025.53664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.4	1	14.48	13.98	14.98	0.079683								0	0	0	0.93576	1	4632	4632		7.9102	0	1		+		23459	16769	14782	14868	22566	22566					0.024893222464470455
PGAAAQTEPQ	10	Unmodified	_PGAAAQTEPQ_					0	0	0			REV__COL27A1|p.A92Efs*108|1|0.15|ENSG00000196739|chr9:114167827-114167858|CTGCCGCCTTGGGCACAGAGCTGGCACTGGTG/-|frameshift_variant	REV__COL27A1|p.A92Efs*108|1|0.15|ENSG00000196739|chr9:114167827-114167858|CTGCCGCCTTGGGCACAGAGCTGGCACTGGTG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	485.2349548339844	2	485.235439	968.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.478	1	26.328	25.828	26.828	-0.14924								0	0	0	0.85468	1	9501	9501		21.747	1.293	1		+		23460	10232	14783	14869	22567	22567					-0.02916583867238387
PGAADRSATPA	11	Unmodified	_PGAADRSATPA_					0	0	0		nc|ENSG00000164076|Q8NCB2-3|CAMKV	nc|ENSG00000164076|Q8NCB2-3|CAMKV	nc|ENSG00000164076|Q8NCB2-3|CAMKV	MULTI-MSMS	HCT116MG_D190212_S4	4	507.25421142578125	2	507.254163	1012.49377	0.1894	9.6072E-05	-0.23956	-0.00012152	-0.050162	-2.5445E-05	507.2540448103932	20.284	0.77007	20.083	19.478	20.248	-0.20133					17	14	2	0	0	0	0.71887	1	6902	6902		14.838	2.5976	1	2136500			23461	9523	14784	14870	22568	22568					-0.011974926016364407
PGAAEPQQ	8	Unmodified	_PGAAEPQQ_					0	0	0		ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	797.379638671875	1	797.378808	796.371532	0.44895	0.00035798	0.30958	0.00024685	0.75853	0.00060483	797.3789962915403	17.112	1.2275	16.941	16.257	17.484	-0.17047					36	23	3	0	0	0	0.32897	1	5513	5513		56.541	1.7677	1	6032300			23462	7765	14785	14871	22569	22569					-0.03479909613190557
PGAAEPQQ	8	Unmodified	_PGAAEPQQ_					0	0	0		ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	399.1929016113281	2	399.193042	796.371532	-0.40386	-0.00016122	0.021457	8.5654E-06	-0.38241	-0.00015265	399.19296200337527	16.867	0.71883	16.7	16.303	17.022	-0.16664					19	13	2	0	0	0	0.60268	1	5539	5539		32.117	3.6301	1	996810			23463	7765	14785	14871	22570	22570					-0.03479909613190557
PGAAFAPI	8	Unmodified	_PGAAFAPI_					0	0	0		ENSG00000171992|ENST00000307662|SYNPO	ENSG00000171992|ENST00000307662|SYNPO	ENSG00000171992|ENST00000307662|SYNPO	MULTI-MSMS	HCT116MG_D190212_S3	3	743.4103393554688	1	743.408652	742.401375	0.49341	0.0003668	1.0189	0.00075748	1.5123	0.0011243	743.4096388989841	33.736	0.75984	33.446	33.011	33.771	-0.29013					18	14	2	0	0	0	0.8029	1	12469	12469		11.114	0	1	3463300			23464	5228	14786	14872	22571	22571					0.019870741228032784
PGAAGDRETGP	11	Unmodified	_PGAAGDRETGP_					0	0	0		ENST00000258214.2_1_16:57552115-57552157:-|nuORF	ENST00000258214.2_1_16:57552115-57552157:-|nuORF	ENST00000258214.2_1_16:57552115-57552157:-|nuORF	MSMS	HCT116MG_D190212_S1	1	514.2890014648438	2	514.243795	1026.47304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.388	1	16.388	15.888	16.888	0								0	0	0	0.94284	1	5512	5512		10.074	0	1				23465	6830	14787	14873	22572	22572					-0.03914082981282263
PGAAGPGPG	9	Unmodified	_PGAAGPGPG_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	REV__AATK|p.F1101Sfs*3|1|0.46|ENSG00000181409|chr17:81120634-81120634|A/-|frameshift_variant	REV__AATK|p.F1101Sfs*3|1|0.46|ENSG00000181409|chr17:81120634-81120634|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	680.2966918945312	1	680.336215	679.328939	0.59099	0.00040207	-0.66083	-0.00044959	-0.069839	-4.7514E-05	680.3365205506736	22.709	0.20855	22.471	22.341	22.55	-0.23758					5	3	2	0	0	0	0.07135	1	7898	7898		67.413	0	1	1751400	+		23466	9814	14788	14874	22573	22573					-0.02355259950763866
PGAAGPPGG	9	Unmodified	_PGAAGPPGG_					0	0	0			REV__CON__P04258	REV__CON__P04258	MULTI-MSMS	HCT116MG_D190212_S4	4	680.33740234375	1	680.336215	679.328939	0.59099	0.00040207	-0.66083	-0.00044959	-0.069839	-4.7514E-05	680.3365205506736	22.709	0.20855	22.471	22.341	22.55	-0.23758					5	3	2	0	0	0	0.039337	1	7938	7938		79.935	12.522	1	1751400	+	+	23467	10256	14789	14875	22574	22574					-0.02355259950763866
PGAAISKK	8	Unmodified	_PGAAISKK_					0	0	0		nc|ENSG00000188227|Q6ZN11-3|ZNF793;ZNF793|p.C288Lfs*28|1|0.42|ENSG00000188227|chr19:37537512-37537513|-/T|frameshift_variant;nc|ENSG00000188227|Q6ZN11-2|ZNF793;ZNF793|p.C288Vfs*113|2|0.29|ENSG00000188227|chr19:37537513-37537513|T/-|frameshift_variant;ZNF793|p.C344Rfs*60|1|0.12|ENSG00000188227|chr19:37537687-37537688|-/AGGGTCTC|frameshift_variant;ENSG00000188227|ENST00000627814|ZNF793	nc|ENSG00000188227|Q6ZN11-3|ZNF793	nc|ENSG00000188227|Q6ZN11-3|ZNF793	MSMS	HCT116MG_D190212_S2	2	386.23846435546875	2	386.239796	770.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.956	1	34.797	34.297	35.297	-0.15834								0	0	0	0.8837	1	13022	13022		2.8892	0	1				23468	5974	14790	14876	22575	22575					0.07062434559895792
PGAARCQWPQ	10	Unmodified	_PGAARCQWPQ_					0	0	0			REV__ENST00000598558.5_1_19:41083239-41086365:+|nuORF	REV__ENST00000598558.5_1_19:41083239-41086365:+|nuORF	MSMS	HCT116MG_D190212_S4	4	557.2503662109375	2	557.26655	1112.51855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.378	1	19.191	18.691	19.691	-0.18674								0	0	0	0.90475	1	6568	6568		14.838	3.198	1		+		23469	16734	14791	14877	22576	22576					-0.033211359998858825
PGAARDSQAEP	11	Unmodified	_PGAARDSQAEP_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ZBTB20|p.P692Cfs*33|1|0.42|ENSG00000181722|chr3:114339156-114339157|GG/-|frameshift_variant;ZBTB20|p.P692Lfs*43|20|0.32|ENSG00000181722|chr3:114339156-114339156|G/-|frameshift_variant;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MSMS	HCT116MG_D190212_S3	3	549.7989501953125	2	549.762352	1097.51015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.872	1	18.941	18.441	19.441	0.069159								0	0	0	0.93552	1	6437	6437		13.906	1.6654	1				23470	5640	14792	14878	22577	22577					-0.034704114355236015
PGAARLRA	8	Unmodified	_PGAARLRA_					0	0	0			REV__ENST00000340880.4_1_19:15579558-15582790:-|nuORF	REV__ENST00000340880.4_1_19:15579558-15582790:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	811.4901123046875	1	811.489696	810.48242	0.77535	0.00062919	-0.075812	-6.152E-05	0.69954	0.00056767	811.4896283681907	47.672	0.2966	47.672	47.492	47.789	0					10	5	2	0	0	0	0.86564	1	18101	18101		2.5775	0	1	182790000	+		23471	14969	14793	14879	22578	22578					0.06959774885547176
PGAARVLPP	9	Unmodified	_PGAARVLPP_					0	0	0		ENST00000546455.5_1_12:47629220-47629460:+|nuORF	ENST00000546455.5_1_12:47629220-47629460:+|nuORF	ENST00000546455.5_1_12:47629220-47629460:+|nuORF	MSMS	HCT116MG_D190212_S1	1	439.2650146484375	2	439.266345	876.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.092	1	18.092	17.592	18.592	0								0	0	0	0.7676	1	6198	6198		9.3474	0	1				23472	8727	14794	14880	22579	22579					0.07493812342568162
PGAASDLHAA	10	Unmodified	_PGAASDLHAA_					0	0	0		ENST00000332065.9_1_17:74078001-74078805:-|nuORF	ENST00000332065.9_1_17:74078001-74078805:-|nuORF	ENST00000332065.9_1_17:74078001-74078805:-|nuORF	MSMS	HCT116MG_D190212_S2	2	455.2249450683594	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.895	1	19.52	19.02	20.02	-0.37503								0	0	0	0.91507	1	6925	6925		12.532	1.7076	1				23473	7166	14795	14881	22580	22580					-0.022685491760967125
PGAASNLSY	9	Unmodified	_PGAASNLSY_					0	0	0		CLEC14A|p.R193H|1|0.35|ENSG00000176435|chr14:38255445-38255445|C/T|missense_variant;ENSG00000176435|ENST00000342213|CLEC14A	CLEC14A|p.R193H|1|0.35|ENSG00000176435|chr14:38255445-38255445|C/T|missense_variant	CLEC14A|p.R193H|1|0.35|ENSG00000176435|chr14:38255445-38255445|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	440.22943115234375	2	440.213975	878.413397	-0.37106	-0.00016334	0.19323	8.5065E-05	-0.17782	-7.828E-05	440.21389421949135	16.411	0.3325	16.247	16.07	16.403	-0.16364					10	6	2	0	0	0	0.60612	1	5306	5306		10.824	2.2306	1	1769700			23474	474	14796	14882	22581	22581					-0.03067353924677718
PGACCSLCAQ	10	Unmodified	_PGACCSLCAQ_					0	0	0		ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF	ENSG00000181625|ENST00000330181|SLX1B	ENSG00000181625|ENST00000330181|SLX1B	MULTI-MSMS	HCT116MG_D190212_S4	4	477.7176513671875	2	476.687898	951.361243	0.24044	0.00011462	-0.32337	-0.00015415	-0.082925	-3.953E-05	476.6876351519963	17.555	1.2446	17.385	17.121	18.365	-0.17047					38	23	3	0	0	0	0.85662	1	5901	5901		7.2892	0	1	6319000			23475	3172	14797	14883	22582	22582					-0.11638299925948559
PGADAEVEPW	10	Unmodified	_PGADAEVEPW_					0	0	0		ENST00000564774.5_1_16:84213598-84214368:-|nuORF;ENST00000341690.10_1_16:84213598-84214685:-|nuORF;ENST00000541676.5_2_16:84213598-84214742:-|nuORF	ENST00000564774.5_1_16:84213598-84214368:-|nuORF	ENST00000564774.5_1_16:84213598-84214368:-|nuORF	MSMS	HCT116MG_D190212_S4	4	536.16552734375	2	535.743096	1069.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.156	1	17.981	17.481	18.481	-0.17501								0	0	0	0.93854	1	6074	6074		7.2892	0.56607	1				23476	8850	14798	14884	22583	22583					-0.060317170700500355
PGADGRPGSPG	11	Unmodified	_PGADGRPGSPG_					0	0	0		COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant;COL7A1|p.P2298Lfs*90|1|0.18|ENSG00000114270|chr3:48572678-48572678|G/-|frameshift_variant;COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant;nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1;COL7A1|p.G2177Wfs*113|1|0.1|ENSG00000114270|chr3:48573864-48573865|-/G|frameshift_variant;COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant;COL7A1|p.P1754Qfs*87|1|0.6|ENSG00000114270|chr3:48579490-48579490|G/-|frameshift_variant;COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant;COL7A1|p.P2029Lfs*177|2|0.43|ENSG00000114270|chr3:48575438-48575438|G/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	484.2334899902344	2	484.23323	966.451907	-0.097304	-4.7118E-05	0.23795	0.00011522	0.14065	6.8106E-05	484.23334886913045	18.045	0.36392	17.87	17.688	18.051	-0.17501					12	6	3	0	0	0	0.65731	1	6036	6036		29.082	3.6823	1	2816500			23477	530	14799	14885	22584	22584					-0.032660482901405885
PGADIQPNSPP	11	Unmodified	_PGADIQPNSPP_					0	0	0		nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5	nc|ENSG00000103534|Q6UXY8-2|TMC5	nc|ENSG00000103534|Q6UXY8-2|TMC5	MSMS	HCT116MG_D190212_S4	4	546.7692260742188	2	546.769645	1091.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.322	1	26.021	25.521	26.521	-0.30087								0	0	0	0.36628	1	9371	9371		53.404	5.6553	1				23478	1901	14800	14886	22585	22585					-0.017363392873676275
PGADPVHGEA	10	Unmodified	_PGADPVHGEA_					0	0	0		nc|ENSG00000138336|Q8NFU7-4|TET1;TET1|p.K776Nfs*19|2|0.36|ENSG00000138336|chr10:68645052-68645052|A/-|frameshift_variant;TET1|p.K775Lfs*23|1|0.07|ENSG00000138336|chr10:68645051-68645052|-/TTAGTTAC|frameshift_variant;nc|ENSG00000138336|Q8NFU7-3|TET1;TET1|p.N1409Tfs*2|1|0.24|ENSG00000138336|chr10:68646950-68646950|A/-|frameshift_variant;ENSG00000138336|ENST00000373644|TET1	nc|ENSG00000138336|Q8NFU7-4|TET1	nc|ENSG00000138336|Q8NFU7-4|TET1	MSMS	HCT116MG_D190212_S3	3	475.2207336425781	2	475.222331	948.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.669	1	20.703	20.203	21.203	0.034473								0	0	0	0.90475	1	7161	7161		14.838	0.25658	1				23479	3550	14801	14887	22586	22586					-0.046168530387149076
PGADQHGLVQP	11	Unmodified	_PGADQHGLVQP_					0	0	0		nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;nc|ENSG00000129646|Q9H0J4-2|QRICH2	nc|ENSG00000129646|Q9H0J4|QRICH2	nc|ENSG00000129646|Q9H0J4|QRICH2	MSMS	HCT116MG_D190212_S3	3	559.7836303710938	2	559.783087	1117.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.395	1	19.455	18.955	19.955	0.05983								0	0	0	0.93552	1	6648	6648		13.906	0	1				23480	3040	14802	14888	22587	22587					-0.0024523067620521033
PGADRPSLL	9	Unmodified	_PGADRPSLL_					0	0	0		MARK4|p.E521D|1|0.31|ENSG00000007047|chr19:45294417-45294417|G/T|missense_variant	MARK4|p.E521D|1|0.31|ENSG00000007047|chr19:45294417-45294417|G/T|missense_variant	MARK4|p.E521D|1|0.31|ENSG00000007047|chr19:45294417-45294417|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	463.2589111328125	2	463.258717	924.50288	0.34556	0.00016008	0.15339	7.1058E-05	0.49894	0.00023114	463.25886697037834	19.664	0.20823	19.724	19.594	19.802	0.05983					6	3	2	0	0	0	0.47829	1	6787	6787		18.135	4.2289	1	1888800			23481	9318	14803	14889	22588	22588					0.03760900754718932
PGADRPSLL	9	Unmodified	_PGADRPSLL_					0	0	0		MARK4|p.E521D|1|0.31|ENSG00000007047|chr19:45294417-45294417|G/T|missense_variant	MARK4|p.E521D|1|0.31|ENSG00000007047|chr19:45294417-45294417|G/T|missense_variant	MARK4|p.E521D|1|0.31|ENSG00000007047|chr19:45294417-45294417|G/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	463.258717	924.50288	0.025677	1.1895E-05	0.66215	0.00030674	0.68782	0.00031864	463.2589595815886	20.008	0.20798	19.814	19.632	19.84	-0.19367	0.045011	0.00022623	NaN	18.135	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1729100			23482	9318	14803	14889							0.03760900754718932
PGADRSHP	8	Unmodified	_PGADRSHP_					0	0	0			REV__ENST00000511526.5_1_3:128621468-128624998:+|nuORF	REV__ENST00000511526.5_1_3:128621468-128624998:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	418.7043762207031	2	418.704109	835.393664	-0.14443	-6.0474E-05	0.18655	7.8109E-05	0.042118	1.7635E-05	418.7041185669581	17.166	0.93665	17.251	16.912	17.849	0.084467					34	17	3	0	0	0	0.7524	1	5951	5951		16.942	1.0951	1	15296000	+		23483	16184	14804	14890	22589	22589					-0.03061685144768944
PGAEDGSWWD	10	Unmodified	_PGAEDGSWWD_					0	0	0		ENSG00000189120|ENST00000536300|SP6	ENSG00000189120|ENST00000536300|SP6	ENSG00000189120|ENST00000536300|SP6	MULTI-SECPEP	HCT116MG_D190212_S3	3	560.2633666992188	2	560.222528	1118.4305	0.27112	0.00015189	0.24069	0.00013484	0.51182	0.00028673	560.2224121076753	16.676	0.52027	16.76	16.496	17.017	0.084875					16	9	3	0	0	0	0.3029	1	5528	5528		10.824	0	1	1780600			23484	6021	14805	14891	22590	22590					-0.12397478109505755
PGAEDSRY	8	Unmodified	_PGAEDSRY_					0	0	0		ENST00000491929.1_1_13:103452770-103457665:+|nuORF	ENST00000491929.1_1_13:103452770-103457665:+|nuORF	ENST00000491929.1_1_13:103452770-103457665:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	447.700927734375	2	447.701232	893.38791	0.0766	3.4294E-05	-0.12424	-5.5623E-05	-0.047642	-2.1329E-05	447.70120254210104	23.504	1.6548	23.465	22.262	23.917	-0.03968					51	31	3	0	0	0	0.74206	1	8132	8132		18.135	2.2878	1	5313100			23485	8347	14806	14892	22591	22591					-0.06304828447093769
PGAEDSRY	8	Unmodified	_PGAEDSRY_					0	0	0		ENST00000491929.1_1_13:103452770-103457665:+|nuORF	ENST00000491929.1_1_13:103452770-103457665:+|nuORF	ENST00000491929.1_1_13:103452770-103457665:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	447.70147705078125	2	447.701232	893.38791	0.18289	8.1881E-05	-0.081611	-3.6537E-05	0.10128	4.5344E-05	447.7011392686428	23.434	1.7203	23.186	22.123	23.844	-0.24775					58	32	2	0	0	0	0.77285	2	8125	8125;8410		14.582	6.3541	1	5983700			23486	8347	14806	14892	22592;22593	22592					-0.06304828447093769
PGAEEHDE	8	Unmodified	_PGAEEHDE_					0	0	0			REV__ENSG00000116209|ENST00000234831|TMEM59	REV__ENSG00000116209|ENST00000234831|TMEM59	MSMS	HCT116MG_D190212_S2	2	442.1641845703125	2	442.175047	882.33554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.107	1	20.724	20.224	21.224	-0.38288								0	0	0	0.8837	1	7411	7411		5.7604	0	1		+		23487	11578	14807	14893	22594	22594					-0.11033411580706343
PGAEGAPGPQ	10	Unmodified	_PGAEGAPGPQ_					0	0	0			REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	MSMS	HCT116MG_D190212_S3	3	440.7119445800781	2	440.711599	879.408646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.299	1	18.376	17.876	18.876	0.076334								0	0	0	0.53351	1	6206	6206		46.021	2.1627	1		+		23488	16580	14808	14894	22595	22595					-0.03588238067425209
PGAEGAPGPQ	10	Unmodified	_PGAEGAPGPQ_					0	0	0			REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	MSMS	HCT116MG_D190212_S4	4	440.7115173339844	2	440.711599	879.408646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.498	1	18.318	17.818	18.818	-0.18052								0	0	0	0.69311	1	6213	6213		37.974	1.847	1		+		23489	16580	14808	14894	22596	22596					-0.03588238067425209
PGAEGAPGPQP	11	Unmodified	_PGAEGAPGPQP_					0	0	0			REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	REV__ENST00000572253.5_1_17:78055494-78060128:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	489.238037109375	2	489.237981	976.461409	0.10266	5.0224E-05	-0.14525	-7.1059E-05	-0.042588	-2.0835E-05	489.23790123518506	19.494	0.93678	19.554	18.865	19.802	0.05983					24	17	2	0	0	0	0.67041	1	6710	6710		27.629	2.6378	1	3424000	+		23490	16580	14809	14895	22597	22597					-0.02776280004616183
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S1	1	453.71923828125	2	453.719424	905.424296	0.033803	1.5337E-05	0.058208	2.641E-05	0.092011	4.1747E-05	453.7194151265325	19.746	1.1998	19.746	19.027	20.227	0					38	22	2	0	0	0	0.54229	2	6969	6728;6969		41.84	3.0077	1	7136000	+		23491	13219	14810	14896	22598;22599	22599					-0.03219951550386213
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S2	2	906.4336547851562	1	906.431572	905.424296	0.64571	0.00058529	0.079889	7.2413E-05	0.7256	0.00065771	906.431447929486	20.177	0.88918	19.801	19.297	20.187	-0.37597					30	16	3	0	0	0	0.2047	1	6966	6966		74.929	17.207	1	10243000	+		23492	13219	14810	14896	22600	22600					-0.03219951550386213
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S2	2	453.7193908691406	2	453.719424	905.424296	0.05252	2.383E-05	-0.42885	-0.00019458	-0.37633	-0.00017075	453.7194295758733	20.163	1.4638	19.788	18.882	20.346	-0.37503					66	27	4	0	0	0	0.2047	2	7078	6986;7078		74.929	6.6228	1	51349000	+		23493	13219	14810	14896	22601;22602	22602					-0.03219951550386213
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	453.719482421875	2	453.719424	905.424296	0.16996	7.7115E-05	0.13514	6.1317E-05	0.3051	0.00013843	453.71937806733075	19.859	1.9783	19.91	18.649	20.627	0.051249					111	37	4	0	0	0	0.2047	2	6925	6694;6925		74.929	20.155	1	80576000	+		23494	13219	14810	14896	22603;22604	22604					-0.03219951550386213
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	906.4322509765625	1	906.431572	905.424296	0.62844	0.00056964	0.26247	0.00023791	0.89091	0.00080755	906.4317793889381	19.892	1.3536	19.94	18.958	20.311	0.048107					48	25	3	0	0	0	0.2047	1	6885	6885		74.929	1.9611	1	10123000	+		23495	13219	14810	14896	22605	22605					-0.03219951550386213
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S4	4	453.74334716796875	2	453.719424	905.424296	0.28674	0.0001301	-0.034622	-1.5709E-05	0.25212	0.00011439	453.71931708398284	20.009	2.1734	19.816	18.55	20.724	-0.19368					109	41	4	0	0	0	0.28919	2	6863	6863;6865		65.235	3.6331	1	70370000	+		23496	13219	14810	14896	22606;22607	22606					-0.03219951550386213
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MSMS	HCT116MG_D190212_S4	4	906.4320068359375	1	906.431572	905.424296	0.70618	0.0006401	0.051424	4.6612E-05	0.7576	0.00068671	906.431526116536	19.978	1.0819	19.785	19.018	20.1	-0.19367					43	20	3	0	0	0	0.2047	1	6868	6868		74.929	9.694	1	6954700	+		23497	13219	14810	14896	22608	22608					-0.03219951550386213
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	906.431572	905.424296	0.64571	0.00058529	0.079889	7.2413E-05	0.7256	0.00065771	906.431447929486	20.177	0.88918	19.801	19.297	20.187	-0.37597	-0.040806	-4.0503E-05	NaN	74.929	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10243000	+		23498	13219	14810	14896							-0.03219951550386213
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	906.431572	905.424296	0.62844	0.00056964	0.26247	0.00023791	0.89091	0.00080755	906.4317793889381	19.892	1.3536	19.94	18.958	20.311	0.048107	0.09793	0.000125	NaN	74.929	48	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10123000	+		23499	13219	14810	14896							-0.03219951550386213
PGAEGPPGPAG	11	Unmodified	_PGAEGPPGPAG_					0	0	0			REV__nc|ENSG00000169031|Q01955-5|COL4A3	REV__nc|ENSG00000169031|Q01955-5|COL4A3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	906.431572	905.424296	0.70618	0.0006401	0.051424	4.6612E-05	0.7576	0.00068671	906.431526116536	19.978	1.0819	19.785	19.018	20.1	-0.19367	-0.057125	-6.6305E-05	NaN	74.929	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6954700	+		23500	13219	14810	14896							-0.03219951550386213
PGAEGPQGQPG	11	Unmodified	_PGAEGPQGQPG_					0	0	0			REV__ENSG00000168077|ENST00000301904|SCARA3	REV__ENSG00000168077|ENST00000301904|SCARA3	MSMS	HCT116MG_D190212_S4	4	497.73345947265625	2	497.733063	993.451573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.902	1	15.738	15.238	16.238	-0.16364								0	0	0	0.95023	1	5164	5164		6.2058	0.47393	1		+		23501	13186	14811	14897	22609	22609					-0.04541468009995242
PGAEGSPGPPG	11	Unmodified	_PGAEGSPGPPG_					0	0	0			REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	462.1465148925781	2	461.716882	921.41921	0.16517	7.6261E-05	0.27957	0.00012908	0.44474	0.00020534	461.71689592098113	19.646	0.98823	19.271	18.569	19.558	-0.37503					28	18	2	0	0	0	0.72139	1	6810	6810		13.906	1.6654	1	7356500	+		23502	10221	14812	14898	22610	22610					-0.04464255412995044
PGAEGSPGPPG	11	Unmodified	_PGAEGSPGPPG_					0	0	0			REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	462.1466064453125	2	461.716882	921.41921	0.36637	0.00016916	0.10885	5.0259E-05	0.47523	0.00021942	461.71675616232864	19.367	1.7182	19.427	18.397	20.115	0.05983					58	32	3	0	0	0	0.70691	2	6652	6421;6652		19.257	3.7227	1	13542000	+		23503	10221	14812	14898	22611;22612	22612					-0.04464255412995044
PGAEGSPGPPG	11	Unmodified	_PGAEGSPGPPG_					0	0	0			REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	462.1466369628906	2	461.716882	921.41921	0.039712	1.8336E-05	0.43434	0.00020054	0.47405	0.00021888	461.7169372325432	19.49	1.4979	19.303	18.401	19.899	-0.18674					62	28	3	0	0	0	0.72139	1	6533	6533		13.906	0.39817	1	9367400	+		23504	10221	14812	14898	22613	22613					-0.04464255412995044
PGAEPFGYDLE	11	Unmodified	_PGAEPFGYDLE_					0	0	0			REV__ENST00000505145.1_1_5:177034264-177036693:+|nuORF	REV__ENST00000505145.1_1_5:177034264-177036693:+|nuORF	MSMS	HCT116MG_D190212_S2	2	597.770263671875	2	597.769311	1193.52407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.725	1	15.391	14.891	15.891	-0.33451								0	0	0	0.95023	1	5245	5245		6.2058	2.6093	1		+		23505	10569	14813	14899	22614	22614					-0.06495178727095663
PGAEPGAP	8	Unmodified	_PGAEPGAP_					0	0	0		ENST00000262367.9_1_16:3930345-3930435:-|nuORF	ENST00000262367.9_1_16:3930345-3930435:-|nuORF	ENST00000262367.9_1_16:3930345-3930435:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	695.3365478515625	1	695.335881	694.328604	0.89798	0.0006244	-0.37112	-0.00025806	0.52685	0.00036634	695.3356152598482	24.815	0.72935	24.731	24.393	25.122	-0.083694					21	13	2	0	0	0	0.19251	1	8789	8789		75.128	4.2634	1	12390000			23506	6862	14814	14900	22615	22615					-0.030786796706138375
PGAEPGAP	8	Unmodified	_PGAEPGAP_					0	0	0		ENST00000262367.9_1_16:3930345-3930435:-|nuORF	ENST00000262367.9_1_16:3930345-3930435:-|nuORF	ENST00000262367.9_1_16:3930345-3930435:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	695.3358764648438	1	695.335881	694.328604	0.89762	0.00062415	-0.14782	-0.00010279	0.7498	0.00052136	695.3355847400468	24.753	0.83117	24.484	24.238	25.069	-0.26881					26	15	2	0	0	0	0.2535	1	8698	8698		63.394	3.5985	1	12062000			23507	6862	14814	14900	22616	22616					-0.030786796706138375
PGAEPGPA	8	Unmodified	_PGAEPGPA_					0	0	0			REV__nc|ENSG00000293419|Q7Z5A4|PRSS42P	REV__nc|ENSG00000293419|Q7Z5A4|PRSS42P	MULTI-MSMS	HCT116MG_D190212_S3	3	695.372314453125	1	695.335881	694.328604	0.74421	0.00051748	0.019972	1.3887E-05	0.76418	0.00053136	695.3355823446483	30.995	1.0927	30.735	30.399	31.492	-0.26071					24	20	2	0	0	0	0.70465	1	11515	11515		22.453	0	1	6585200	+		23508	17333	14815	14901	22617	22617					-0.030786796706138375
PGAEPHRATP	10	Unmodified	_PGAEPHRATP_					0	0	0		BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN;BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	516.763671875	2	516.764697	1031.51484	0.28941	0.00014956	-1.203	-0.00062168	-0.91362	-0.00047213	516.7637140920873	20.995	0.62301	20.785	20.604	21.227	-0.20959					19	11	2	0	0	0	0.51145	1	7249	7249		34.402	1.616	1	3108200			23509	284	14816	14902	22618	22618					0.00034517497897468274
PGAEPRRFWYL	11	Unmodified	_PGAEPRRFWYL_					0	0	0			REV__ENST00000408953.3_1_5:159826916-159827063:-|nuORF	REV__ENST00000408953.3_1_5:159826916-159827063:-|nuORF	MSMS	HCT116MG_D190212_S3	3	696.3672485351562	2	696.364579	1390.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.056	1	20.104	19.604	20.604	0.048107								0	0	0	0.94284	1	6914	6914		10.074	3.8681	1		+		23510	15429	14817	14903	22619	22619					0.034875724456696844
PGAEPRRFWYL	11	Unmodified	_PGAEPRRFWYL_					0	0	0			REV__ENST00000408953.3_1_5:159826916-159827063:-|nuORF	REV__ENST00000408953.3_1_5:159826916-159827063:-|nuORF	MSMS	HCT116MG_D190212_S4	4	696.3681030273438	2	696.364579	1390.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.228	1	20.027	19.527	20.527	-0.20133								0	0	0	0.94284	1	6911	6911		10.074	3.8681	1		+		23511	15429	14817	14903	22620	22620					0.034875724456696844
PGAEQLAG	8	Unmodified	_PGAEQLAG_					0	0	0			REV__ENST00000254657.7_1_2:239164305-239164512:-|nuORF	REV__ENST00000254657.7_1_2:239164305-239164512:-|nuORF	MSMS	HCT116MG_D190212_S4	4	371.5087890625	2	371.690136	741.365718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.338	1	21.123	20.623	21.623	-0.21481								0	0	0	0.8837	1	7360	7360		14.582	0	1		+		23512	14600	14818	14904	22621	22621					-0.015310081248458118
PGAETPAAQ	9	Unmodified	_PGAETPAAQ_					0	0	0		ENST00000315215.11_1_8:37654508-37654700:+|nuORF	ENST00000315215.11_1_8:37654508-37654700:+|nuORF	ENST00000315215.11_1_8:37654508-37654700:+|nuORF	MSMS	HCT116MG_D190212_S4	4	421.2063903808594	2	421.20615	840.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.584	1	26.284	25.784	26.784	-0.30087								0	0	0	0.76781	1	9477	9477		8.5933	0.68312	1				23513	7080	14819	14905	22622	22622					-0.028836404417234007
PGAGAEGSWPP	11	Unmodified	_PGAGAEGSWPP_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MSMS	HCT116MG_D190212_S3	3	513.2357788085938	2	513.237981	1024.46141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.662	1	18.731	18.231	19.231	0.069159								0	0	0	0.89642	1	6352	6352		20.454	1.1966	1				23514	4287	14820	14906	22623	22623					-0.049842800046235425
PGAGAEGSWPP	11	Unmodified	_PGAGAEGSWPP_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MSMS	HCT116MG_D190212_S4	4	513.2362060546875	2	513.237981	1024.46141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.841	1	18.661	18.161	19.161	-0.18052								0	0	0	0.67132	1	6351	6351		39.957	3.8303	1				23515	4287	14820	14906	22624	22624					-0.049842800046235425
PGAGANPRP	9	Unmodified	_PGAGANPRP_					0	0	0		ENST00000468582.5_1_7:99746612-99747186:+|nuORF	ENST00000468582.5_1_7:99746612-99747186:+|nuORF	ENST00000468582.5_1_7:99746612-99747186:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	418.7221984863281	2	418.722301	835.43005	-0.059255	-2.4812E-05	0.22674	9.494E-05	0.16748	7.0128E-05	418.72233378039897	16.207	0.31364	15.872	15.689	16.003	-0.33451					7	5	2	0	0	0	0.13706	1	5479	5479		50.855	0	1	2074300			23516	8130	14821	14907	22625	22625					0.005751917519432936
PGAGASNVAY	10	Unmodified	_PGAGASNVAY_					0	0	0			REV__PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant	REV__PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	453.7197265625	2	453.719424	905.424296	0.16996	7.7115E-05	0.13514	6.1317E-05	0.3051	0.00013843	453.71937806733075	19.859	1.9783	19.91	18.649	20.627	0.051249					111	37	4	0	0	0	0.54141	1	6454	6454		32.305	1.6689	1	80576000	+		23517	12257	14822	14908	22626	22626					-0.03219951550386213
PGAGATDSRV	10	Unmodified	_PGAGATDSRV_					0	0	0		ENST00000318782.8_1_16:3019292-3019526:+|nuORF	ENST00000318782.8_1_16:3019292-3019526:+|nuORF	ENST00000318782.8_1_16:3019292-3019526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	465.7848205566406	2	465.735606	929.456658	0.11457	5.3359E-05	-0.034823	-1.6218E-05	0.079748	3.7141E-05	465.735458832525	20.271	0.36412	19.891	19.605	19.969	-0.37949					9	6	2	0	0	0	0.74117	1	7004	7004		16.942	2.3606	1	14416000			23518	7091	14823	14909	22627	22627					-0.010891641473676827
PGAGATGPTFF	11	Unmodified	_PGAGATGPTFF_					0	0	0			REV__ENST00000604992.1_1_3:37284878-37285049:-|nuORF	REV__ENST00000604992.1_1_3:37284878-37285049:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	511.4720764160156	2	511.750724	1021.4869	0.11941	6.1106E-05	-0.41217	-0.00021093	-0.29277	-0.00014982	511.7504635322083	22.536	0.26028	22.517	22.439	22.699	-0.018869					6	4	2	0	0	0	0.35307	1	7908	7908		19.257	19.257	1	7116700	+		23519	16765	14824	14910	22628	22628					-0.022988054821894366
PGAGATGPTFF	11	Unmodified	_PGAGATGPTFF_					0	0	0			REV__ENST00000604992.1_1_3:37284878-37285049:-|nuORF	REV__ENST00000604992.1_1_3:37284878-37285049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	511.7500305175781	2	511.750724	1021.4869	0.083754	4.2861E-05	-1.1882	-0.00060806	-1.1044	-0.0005652	511.7500086477547	22.867	0.2093	22.629	22.497	22.706	-0.23758					6	3	2	0	0	0	0.70691	1	7992	7992		19.257	3.4098	1	1598600	+		23520	16765	14824	14910	22629	22629					-0.022988054821894366
PGAGATLYRE	10	Unmodified	_PGAGATLYRE_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MSMS	HCT116MG_D190212_S3	3	517.7666015625	2	517.766906	1033.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.606	1	17.688	17.188	18.188	0.081358								0	0	0	0.45592	1	5926	5926		49.933	0.19107	1				23521	4842	14825	14911	22630	22630					0.0038398192079966975
PGAGATLYREE	11	Unmodified	_PGAGATLYREE_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	HCT116MG_D190212_S4	4	582.2880249023438	2	582.288202	1162.56185	0.085273	4.9653E-05	0.24628	0.00014341	0.33156	0.00019306	582.2882762033339	18.223	1.4008	18.048	17.376	18.777	-0.17501					43	26	2	0	0	0	0.69401	1	6205	6205		24.021	5.8742	1	4546400			23522	4842	14826	14912	22631	22631					-0.01292667741608966
PGAGDLWHRH	10	Unmodified	_PGAGDLWHRH_					0	0	0			REV__ENST00000586052.5_1_17:76475094-76487566:-|nuORF	REV__ENST00000586052.5_1_17:76475094-76487566:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	572.75341796875	2	573.283589	1144.55262	0.43736	0.00025073	-0.64479	-0.00036965	-0.20743	-0.00011892	573.2833220539965	37.12	0.20744	37.12	36.99	37.197	0					5	3	2	0	0	0	0.30526	1	13886	13886		6.2058	6.2058	1	12326000	+		23523	16653	14827	14913	22632	22632					-0.013869715166038077
PGAGDQVHG	9	Unmodified	_PGAGDQVHG_					0	0	0			REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	MULTI-MSMS	HCT116MG_D190212_S3	3	419.1961364746094	2	419.196116	836.37768	-0.13797	-5.7837E-05	0.57993	0.00024311	0.44196	0.00018527	419.1962505465133	17.166	0.36418	17.251	17.016	17.381	0.084467					11	6	2	0	0	0	0.45549	1	5753	5753		19.439	4.8573	1	3877000	+		23524	17229	14828	14914	22633	22633					-0.04705391381651225
PGAGDQVHG	9	Unmodified	_PGAGDQVHG_					0	0	0			REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	MULTI-SECPEP	HCT116MG_D190212_S3	3	418.7038879394531	2	419.196116	836.37768	-0.012921	-5.4164E-06	0.48042	0.00020139	0.4675	0.00019598	419.19626556349067	16.475	0.26005	16.56	16.393	16.653	0.085424					6	4	2	0	0	0	0.21838	1	5467	5467		26.884	6.0124	1	986990	+		23525	17229	14828	14914	22634	22634					-0.04705391381651225
PGAGDQVHG	9	Unmodified	_PGAGDQVHG_					0	0	0			REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	REV__nc|ENSG00000179832|Q8NDA8-6|MROH1	MULTI-MSMS	HCT116MG_D190212_S4	4	419.1961364746094	2	419.196116	836.37768	-0.21907	-9.1833E-05	0.36983	0.00015503	0.15076	6.3197E-05	419.1962345617146	17.265	0.41329	17.095	16.863	17.277	-0.17047					17	7	3	0	0	0	0.45549	1	5739	5739		19.439	4.8573	1	2582000	+		23526	17229	14828	14914	22635	22635					-0.04705391381651225
PGAGEGSPGP	10	Unmodified	_PGAGEGSPGP_					0	0	0		ENSG00000186564|ENST00000334793|FOXD2	ENSG00000186564|ENST00000334793|FOXD2	ENSG00000186564|ENST00000334793|FOXD2	MULTI-MSMS	HCT116MG_D190212_S3	3	825.3745727539062	1	825.373723	824.366446	0.8684	0.00071675	0.032285	2.6647E-05	0.90068	0.0007434	825.3736311271498	22.206	0.83423	22.206	21.677	22.511	0.00074387					23	15	2	0	0	0	0.4015	1	7707	7707		42.095	6.0504	1	3805900			23527	5894	14829	14915	22636	22636					-0.0527621347580407
PGAGEGSPGPP	11	Unmodified	_PGAGEGSPGPP_					0	0	0		ENSG00000186564|ENST00000334793|FOXD2	ENSG00000186564|ENST00000334793|FOXD2	ENSG00000186564|ENST00000334793|FOXD2	MSMS	HCT116MG_D190212_S2	2	462.1465759277344	2	461.716882	921.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.886	1	17.529	17.029	18.029	-0.35647								0	0	0	0.9414	1	6114	6114		10.824	1.4765	1				23528	5894	14830	14916	22637	22637					-0.04464255412995044
PGAGFGAR	8	Unmodified	_PGAGFGAR_					0	0	0		ENST00000337979.8_1_11:59522641-59522929:+|nuORF	ENST00000337979.8_1_11:59522641-59522929:+|nuORF	ENST00000337979.8_1_11:59522641-59522929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	732.3782958984375	1	732.378749	731.371472	0.76371	0.00055933	-1.7014	-0.0012461	-0.93771	-0.00068676	732.3772905265079	23.609	0.2081	23.362	23.22	23.428	-0.24775					5	3	2	0	0	0	0.84415	1	8293	8293		6.3541	0	1	3265900			23529	7199	14831	14917	22638	22638					-0.0049586482252834685
PGAGGGYY	8	Unmodified	_PGAGGGYY_					0	0	0		ENST00000488015.5_1_7:87840172-87849341:-|nuORF;ENSG00000075142|ENST00000265729|SRI;ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000488015.5_1_7:87840172-87849341:-|nuORF	ENST00000488015.5_1_7:87840172-87849341:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	741.3207397460938	1	741.320231	740.312954	1.1287	0.0008367	0.36724	0.00027224	1.4959	0.0011089	741.3199515692695	23.882	0.26077	23.499	23.351	23.612	-0.38324					8	4	2	0	0	0	0.8029	1	8554	8554		11.114	1.767	1	12489000			23530	1308	14832	14918	22639	22639					-0.06758966187669557
PGAGGYLNS	9	Unmodified	_PGAGGYLNS_					0	0	0		HOXA3|p.S318Rfs*50|1|0.3|ENSG00000105997|chr7:27108269-27108293|CTGTGGGGGTGGCGGGGGTGCGCAG/-|frameshift_variant;HOXA3|p.Q302Rfs*74|1|0.39|ENSG00000105997|chr7:27108343-27108343|G/-|frameshift_variant;ENSG00000105997|ENST00000612286|HOXA3	HOXA3|p.S318Rfs*50|1|0.3|ENSG00000105997|chr7:27108269-27108293|CTGTGGGGGTGGCGGGGGTGCGCAG/-|frameshift_variant	HOXA3|p.S318Rfs*50|1|0.3|ENSG00000105997|chr7:27108269-27108293|CTGTGGGGGTGGCGGGGGTGCGCAG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	418.2000427246094	2	418.200867	834.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.346	1	16.431	15.931	16.931	0.085424								0	0	0	0.71969	1	5417	5417		18.135	0	1				23531	2052	14833	14919	22640	22640					-0.03663623096156243
PGAGLGRP	8	Unmodified	_PGAGLGRP_					0	0	0			REV__ENST00000485364.1_1_20:31136683-31172660:-|nuORF	REV__ENST00000485364.1_1_20:31136683-31172660:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	362.7085266113281	2	362.708663	723.402772	-0.17347	-6.292E-05	0.15594	5.656E-05	-0.017535	-6.3602E-06	362.70862557666123	20.185	0.98944	20.233	19.791	20.78	0.048107					25	18	2	0	0	0	0.44783	1	6923	6923		45.75	0	1	14622000	+		23532	15983	14834	14920	22641	22641					0.030007082115616868
PGAGLSPK	8	Unmodified	_PGAGLSPK_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	HCT116MG_D190212_S4	4	727.8333129882812	1	726.414465	725.407189	0.83046	0.00060326	-0.14792	-0.00010745	0.68254	0.00049581	726.4143146185337	20.904	0.88299	20.694	20.136	21.019	-0.20959					21	16	2	0	0	0	0.77285	1	7115	7115		14.582	0	1	2106200			23533	6646	14835	14921	22642	22642					0.03350172634475257
PGAGNEFQST	10	Unmodified	_PGAGNEFQST_					0	0	0		ENST00000564814.1_1_16:58426342-58426453:+|nuORF	ENST00000564814.1_1_16:58426342-58426453:+|nuORF	ENST00000564814.1_1_16:58426342-58426453:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	504.2245788574219	2	504.225071	1006.43559	-0.28495	-0.00014368	0.24083	0.00012143	-0.044115	-2.2244E-05	504.225276315548	16.735	2.308	16.568	14.973	17.281	-0.16664					79	45	2	0	0	0	0.87641	1	4939	4939		4.3292	0	1	1858500			23534	8851	14836	14922	22643	22643					-0.06737174246882205
PGAGPARGP	9	Unmodified	_PGAGPARGP_					0	0	0			REV__PRR12|p.S999P|1|0.36|ENSG00000126464|chr19:49616180-49616180|T/C|missense_variant	REV__PRR12|p.S999P|1|0.36|ENSG00000126464|chr19:49616180-49616180|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	390.2114562988281	2	390.211569	778.408586	0.10027	3.9126E-05	-0.13121	-5.1198E-05	-0.030937	-1.2072E-05	390.2114396876099	17.353	0.41747	17.004	16.717	17.135	-0.34933					17	7	3	0	0	0	0.0043177	1	5892	5892		146.01	0	1	13979000	+		23535	17442	14837	14923	22644	22644					0.010518067232396788
PGAGPGDHN	9	Unmodified	_PGAGPGDHN_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MSMS	HCT116MG_D190212_S1	1	411.18048095703125	2	411.180466	820.34638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.535	1	16.535	16.035	17.035	0								0	0	0	0.76694	1	5571	5571		11.64	5.8799	1				23536	4808	14838	14924	22645	22645					-0.07097964415766
PGAGPHPDESP	11	Unmodified	_PGAGPHPDESP_					0	0	0			REV__FOXK1|p.Y219Pfs*84|1|0.31|ENSG00000164916|chr7:4740930-4740931|TG/-|frameshift_variant	REV__FOXK1|p.Y219Pfs*84|1|0.31|ENSG00000164916|chr7:4740930-4740931|TG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	530.737060546875	2	530.738345	1059.46214	0.019112	1.0144E-05	-1.3764	-0.00073052	-1.3573	-0.00072038	531.2389716896374	17.112	0.51705	16.941	16.708	17.225	-0.17047					12	9	2	0	0	0	0.59379	1	5648	5648		36.127	11.453	1	942810	+		23537	16834	14839	14925	22646	22646					-0.06521485355574441
PGAGPRTP	8	Unmodified	_PGAGPRTP_					0	0	0		ENSG00000262874|ENST00000574814|C19orf84	ENSG00000262874|ENST00000574814|C19orf84	ENSG00000262874|ENST00000574814|C19orf84	MULTI-MSMS	HCT116MG_D190212_S4	4	752.4049072265625	1	752.404963	751.397687	0.83277	0.00062658	-0.39489	-0.00029712	0.43788	0.00032946	752.4046036259559	22.293	0.36347	22.065	21.884	22.247	-0.22777					10	6	2	0	0	0	0.84415	1	7753	7753		6.3541	0	1	5525100			23538	6637	14840	14926	22647	22647					0.01204404348936805
PGAGPRTP	8	Unmodified	_PGAGPRTP_					0	0	0		ENSG00000262874|ENST00000574814|C19orf84	ENSG00000262874|ENST00000574814|C19orf84	ENSG00000262874|ENST00000574814|C19orf84	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	752.404963	751.397687	0.49801	0.0003747	0.41002	0.0003085	0.90803	0.00068321	752.4050701608818	22.119	0.31232	22.12	21.938	22.25	0.00074577	0.027219	0.00047606	NaN	6.3541	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7764500			23539	6637	14840	14926							0.01204404348936805
PGAGQHAACGP	11	Unmodified	_PGAGQHAACGP_					0	0	0			REV__ENST00000546058.1_1_12:132626298-132626882:-|nuORF	REV__ENST00000546058.1_1_12:132626298-132626882:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	482.7406311035156	2	483.216526	964.418499	0.35083	0.00016953	-0.41584	-0.00020094	-0.065003	-3.141E-05	483.21560275219394	29.82	0.21422	29.584	29.448	29.662	-0.23655					9	3	3	0	0	0	0.35792	1	10815	10815		6.7232	0	1	2907300	+		23540	16397	14841	14927	22648	22648					-0.06513373333712025
PGAGSSGNFDR	11	Unmodified	_PGAGSSGNFDR_					0	0	0		PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	532.7780151367188	2	532.741419	1063.46829	0.44789	0.00023861	0.16084	8.5685E-05	0.60872	0.00032429	532.7413729214737	20.642	0.73665	20.262	19.969	20.706	-0.37949					20	13	2	0	0	0	0.36231	1	7351	7351		8.7454	0	1	7704800			23541	2096	14842	14928	22649	22649					-0.06090967124055169
PGAGTAYQ	8	Unmodified	_PGAGTAYQ_					0	0	0		B3GALT4|p.G242Afs*48|2|0.25|ENSG00000235863|chr6:33278139-33278139|G/-|frameshift_variant	B3GALT4|p.G242Afs*48|2|0.25|ENSG00000235863|chr6:33278139-33278139|G/-|frameshift_variant	B3GALT4|p.G242Afs*48|2|0.25|ENSG00000235863|chr6:33278139-33278139|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	382.68231201171875	2	382.682311	763.350068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.923	1	19.73	19.23	20.23	-0.19367								0	0	0	0.8837	1	6788	6788		14.582	0	1				23542	244	14843	14929	22650	22650					-0.04107294641914905
PGAGVDRQRGP	11	Unmodified	_PGAGVDRQRGP_					0	0	0			REV__ENST00000530471.1_3_11:45826723-45827525:+|nuORF	REV__ENST00000530471.1_3_11:45826723-45827525:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	555.7958984375	2	555.294153	1108.57375	0.19987	0.00011099	-0.10238	-5.6849E-05	0.097495	5.4139E-05	555.7955654397321	15.495	0.20787	15.168	15.071	15.279	-0.32684					5	3	2	0	0	0	0.36296	1	5185	5185		1.4819	0	1	964550	+		23543	14852	14844	14930	22651	22651					0.023809937922123936
PGAHHGDLSP	10	Unmodified	_PGAHHGDLSP_					0	0	0		ENST00000374161.7_3_10:50030485-50031246:+|nuORF	ENST00000374161.7_3_10:50030485-50031246:+|nuORF	ENST00000374161.7_3_10:50030485-50031246:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	493.76702880859375	2	494.235773	986.456993	0.25245	0.00012477	-1.4638	-0.00072345	-1.2113	-0.00059867	494.2349294940713	29.446	0.7275	29.097	28.721	29.449	-0.34921					17	13	2	0	0	0	0.24727	1	10688	10688		26.884	0	1	3223500			23544	7490	14845	14931	22652	22652					-0.036777444275230664
PGAHTRQPVP	10	Unmodified	_PGAHTRQPVP_					0	0	0			REV__PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant	REV__PDCD7|p.K308Nfs*18|1|0.15|ENSG00000090470|chr15:65129117-65129117|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	530.288330078125	2	530.28834	1058.56213	0.37971	0.00020135	-0.81129	-0.00043022	-0.43158	-0.00022886	530.287874411077	18.074	0.20855	18.074	17.985	18.193	0					5	3	2	0	0	0	0.30526	1	6219	6219		3.2813	0.28607	1	1664900	+		23545	10984	14846	14932	22653	22653					0.035187967688898425
PGAKGERGSP	10	Unmodified	_PGAKGERGSP_					0	0	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	MULTI-MSMS	HCT116MG_D190212_S3	3	478.2515563964844	2	478.251423	954.488293	0.007389	3.5338E-06	0.31331	0.00014984	0.3207	0.00015338	478.25145873905217	17.774	0.57224	17.855	17.69	18.262	0.081358					17	10	2	0	0	0	0.65652	1	6031	6031		24.021	1.2843	1	2634500			23546	2806	14847	14933	22654	22654					0.009228286065763314
PGAKGERGSP	10	Unmodified	_PGAKGERGSP_					0	0	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	478.251423	954.488293	0.28919	0.0001383	-0.43433	-0.00020772	-0.14514	-6.9415E-05	478.25121706639897	18.192	0.56944	18.017	17.688	18.257	-0.17501	0.080919	-0.00054984	NaN	24.021	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1583700			23547	2806	14847	14933							0.009228286065763314
PGAKGEVGPAG	11	Unmodified	_PGAKGEVGPAG_					0	0	0		CON__P04258;COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1;COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant;nc|ENSG00000168542|P02461-2|COL3A1	CON__P04258;COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	470.248779296875	2	470.248349	938.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.653	1	24.384	23.884	24.884	-0.26881								0	0	0	0.85129	1	8697	8697		26.268	0	1			+	23548	519;557	14848	14934	22655	22655					0.01044310375061741
PGAKPALN	8	Unmodified	_PGAKPALN_					0	0	0			REV__ENST00000568973.5_1_16:30435747-30440477:-|nuORF	REV__ENST00000568973.5_1_16:30435747-30440477:-|nuORF	MSMS	HCT116MG_D190212_S4	4	384.2225341796875	2	384.224146	766.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.78	1	22.542	22.042	23.042	-0.23758								0	0	0	0.8837	1	7943	7943		6.3541	0	1		+		23549	16564	14849	14935	22656	22656					0.04117861525787703
PGAKRVRRWRR	11	Unmodified	_PGAKRVRRWRR_					0	0	0			REV__ENSG00000283093|ENST00000634648|CENPVL2	REV__ENSG00000283093|ENST00000634648|CENPVL2	MSMS	HCT116MG_D190212_S1	1	719.4439086914062	2	719.442352	1436.87015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.716	1	33.716	33.216	34.216	0								0	0	0	0.95581	1	12487	12487		3.2813	0.28607	1		+		23550	14300	14850	14936	22657	22657					0.16919080810430387
PGALGENRPGA	11	Unmodified	_PGALGENRPGA_					0	0	0			REV__ENST00000374876.4_1_17:78039978-78040182:+|nuORF	REV__ENST00000374876.4_1_17:78039978-78040182:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.769775390625	2	519.76998	1037.52541	0.28276	0.00014697	-1.3838	-0.00071928	-1.1011	-0.00057231	519.7700480691807	17.81	0.52213	17.453	17.18	17.702	-0.35647					20	9	3	0	0	0	0.35748	1	5983	5983		12.241	4.6317	1	11979000	+		23551	15207	14851	14937	22658	22658					0.008145001523189421
PGALPQKA	8	Unmodified	_PGALPQKA_					0	0	0			REV__ENST00000419593.5_1_20:43991879-44037446:+|nuORF	REV__ENST00000419593.5_1_20:43991879-44037446:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	781.3402709960938	1	781.456665	780.449388	0.73868	0.00057725	0.074932	5.8556E-05	0.81362	0.00063581	781.4567022712339	18.971	0.20898	18.601	18.471	18.68	-0.3695					5	3	2	0	0	0	0.30262	1	6522	6522		13.508	0.97634	1	6238400	+		23552	15509	14852	14938	22659	22659					0.050381480428427494
PGALRFMRRII	11	Unmodified	_PGALRFMRRII_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MSMS	HCT116MG_D190212_S3	3	665.4015502929688	2	665.400441	1328.78633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.837	1	35.536	35.036	36.036	-0.30042								0	0	0	0.95521	1	13221	13221		3.5965	0.60125	1				23553	9663	14853	14939	22660	22660					0.13508788598528554
PGALRGNRSD	10	Unmodified	_PGALRGNRSD_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	HCT116MG_D190212_S1	1	521.2579345703125	2	521.773054	1041.53155	0.47397	0.0002473	-0.018113	-9.4508E-06	0.45586	0.00023785	521.7728914502494	14.364	0.19022	14.364	14.252	14.442	0					6	3	2	0	0	0	0.30991	1	4704	4704		3.9444	0.66309	1	787120			23554	6692	14854	14940	22661	22661					0.012450183838609519
PGALVMIP	8	Unmodified	_PGALVMIP_					0	0	0			REV__SEMA5B|p.Q905Rfs*147|1|0.47|ENSG00000082684|chr3:122912855-122912855|G/-|frameshift_variant	REV__SEMA5B|p.Q905Rfs*147|1|0.47|ENSG00000082684|chr3:122912855-122912855|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	399.2349853515625	2	399.233125	796.451696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.45	1	26.3	25.8	26.8	-0.14924								0	0	0	0.8837	1	9489	9489		11.114	0	1		+		23555	10891	14855	14941	22662	22662					0.04532860456299659
PGALWLPPTP	10	Unmodified	_PGALWLPPTP_					0	0	0		Charlie4z_dup5110|chr17:48635771-48635920:-|1.5047031278145129|0.03266398521738|5.53|465.0|7|1|anti-sense	Charlie4z_dup5110|chr17:48635771-48635920:-|1.5047031278145129|0.03266398521738|5.53|465.0|7|1|anti-sense	Charlie4z_dup5110|chr17:48635771-48635920:-|1.5047031278145129|0.03266398521738|5.53|465.0|7|1|anti-sense	MSMS	HCT116MG_D190212_S4	4	524.7929077148438	2	524.794935	1047.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.122	1	36.737	36.237	37.237	-0.38486								0	0	0	0.90475	1	13611	13611		14.838	4.7643	1				23556	424	14856	14942	22663	22663					0.05343234828274035
PGANATQTEHP	11	Unmodified	_PGANATQTEHP_					0	0	0			REV__ENST00000325980.9_1_10:135053443-135053821:+|nuORF	REV__ENST00000325980.9_1_10:135053443-135053821:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	561.3137817382812	2	561.762352	1121.51015	0.31959	0.00017954	-0.21399	-0.00012021	0.1056	5.9323E-05	561.762187196072	28.128	0.67764	27.929	27.558	28.235	-0.19942					14	12	2	0	0	0	0.71776	1	10163	10163		15.248	15.248	1	2230400	+		23557	14905	14857	14943	22664	22664					-0.04574411435532966
PGANEMFLIGP	11	Unmodified	_PGANEMFLIGP_					0	0	0			REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF	REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF	MSMS	HCT116MG_D190212_S4	4	573.3604736328125	2	573.286617	1144.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.049	1	23.791	23.291	24.291	-0.25816								0	0	0	0.93181	1	8453	8453		15.847	0	1		+		23558	15461	14858	14944	22665	22665					-0.007816341199941235
PGANPQPA	8	Unmodified	_PGANPQPA_					0	0	0		nc|ENSG00000272391|A8CG34|POM121C;ENST00000411631.2_7:72711017-72715158:+|nuORF;nc|ENSG00000205578|A6NF01|POM121B;nc|ENSG00000196313|Q96HA1-2|POM121;ENSG00000272391|ENST00000615331|POM121C;nc|ENSG00000196313|Q96HA1-3|POM121;ENSG00000196313|ENST00000434423|POM121	nc|ENSG00000272391|A8CG34|POM121C	nc|ENSG00000272391|A8CG34|POM121C	MULTI-MSMS	HCT116MG_D190212_S3	3	753.7332763671875	1	751.373329	750.366053	0.41091	0.00030875	0.39269	0.00029505	0.8036	0.0006038	751.3733889570809	16.453	0.6241	16.539	16.289	16.913	0.085424					18	11	3	0	0	0	0.84759	1	5450	5450		5.7604	1.0044	1	7337600			23559	9659	14859	14945	22666	22666					-0.019115884050052045
PGANTHER	8	Unmodified	_PGANTHER_					0	0	0		MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant	MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant	MUC5B|p.A1645Gfs*130|1|0.48|ENSG00000117983|chr11:1241806-1241807|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	441.216552734375	2	441.21484	880.415128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.229	1	19.849	19.349	20.349	-0.37949								0	0	0	0.8837	1	7059	7059		11.64	1.4569	1				23560	9347	14860	14946	22667	22667					-0.029863001160606473
PGAPADWIPPP	11	Unmodified	_PGAPADWIPPP_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	HCT116MG_D190212_S2	2	558.7859497070312	2	559.287474	1116.5604	0.34777	0.0001945	-0.39355	-0.00022011	-0.045778	-2.5603E-05	559.2873437336184	17.875	0.20903	17.519	17.388	17.597	-0.35647					5	3	2	0	0	0	0.3619	1	6136	6136		6.2058	4.8763	1	7743700			23561	3466	14861	14947	22668	22668					0.0067774296028346726
PGAPAKDP	8	Unmodified	_PGAPAKDP_					0	0	0			REV__ENST00000572919.1_3_17:3512819-3513218:-|nuORF	REV__ENST00000572919.1_3_17:3512819-3513218:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	377.2034912109375	2	376.700503	751.386454	-0.27585	-0.00010391	0.70474	0.00026548	0.4289	0.00016157	376.7004814520785	21.613	0.6762	21.228	20.959	21.635	-0.38503					16	12	2	0	0	0	0.84759	1	7711	7711		5.7604	0.52976	1	56572000	+		23562	16583	14862	14948	22669	22669					0.0008158225480201509
PGAPATPKGQ	10	Unmodified	_PGAPATPKGQ_					0	0	0			REV__ENST00000398078.7_1_21:45161468-45175941:+|nuORF	REV__ENST00000398078.7_1_21:45161468-45175941:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	462.2508239746094	2	462.250892	922.48723	-0.30799	-0.00014237	0.3784	0.00017492	0.070408	3.2546E-05	462.2510003588918	17.369	0.20783	17.199	17.069	17.277	-0.17047					5	3	2	0	0	0	0.77749	1	5776	5776		13.906	2.2658	1	638920	+		23563	15371	14863	14949	22670	22670					0.022886142376592034
PGAPAWGGGAP	11	Unmodified	_PGAPAWGGGAP_					0	0	0			REV__ENST00000527920.5_1_11:65339976-65340141:+|nuORF	REV__ENST00000527920.5_1_11:65339976-65340141:+|nuORF	MSMS	HCT116MG_D190212_S4	4	469.2278747558594	2	469.229959	936.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.942	1	33.558	33.058	34.058	-0.38426								0	0	0	0.9414	1	12374	12374		10.824	2.2306	1		+		23564	16293	14864	14950	22671	22671					-0.025399414508569862
PGAPDDPI	8	Unmodified	_PGAPDDPI_					0	0	0		MYBPC3|p.G261Afs*39|1|0.39|ENSG00000134571|chr11:47347896-47347896|C/-|frameshift_variant;MYBPC3|p.P453Lfs*13|1|0.26|ENSG00000134571|chr11:47342929-47342929|G/-|frameshift_variant;nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	MYBPC3|p.G261Afs*39|1|0.39|ENSG00000134571|chr11:47347896-47347896|C/-|frameshift_variant	MYBPC3|p.G261Afs*39|1|0.39|ENSG00000134571|chr11:47347896-47347896|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	391.1896667480469	2	391.189968	780.365384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.274	1	19.334	18.834	19.834	0.05983								0	0	0	0.8837	1	6599	6599		10.183	0.83596	1				23565	3292	14865	14951	22672	22672					-0.03358427844727885
PGAPDHGVQP	10	Unmodified	_PGAPDHGVQP_					0	0	0			REV__TEX2|p.L796Cfs*29|1|0.25|ENSG00000136478|chr17:64188206-64188206|G/-|frameshift_variant;REV__nc|ENSG00000136478|Q8IWB9-2|TEX2	REV__nc|ENSG00000136478|Q8IWB9-2|TEX2	MSMS	HCT116MG_D190212_S3	3	487.738525390625	2	487.738148	973.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.753	1	23.692	23.192	24.192	-0.061449								0	0	0	0.7978	1	8402	8402		29.082	3.6823	1		+		23566	17627;12133	14866	14952	22673	22673					-0.026048602847595248
PGAPDPDQSLP	11	Unmodified	_PGAPDPDQSLP_					0	0	0		nc|ENSG00000231213|A0PG75-2|PLSCR5;ENSG00000231213|ENST00000443512|PLSCR5	nc|ENSG00000231213|A0PG75-2|PLSCR5	nc|ENSG00000231213|A0PG75-2|PLSCR5	MULTI-MSMS	HCT116MG_D190212_S4	4	547.2617797851562	2	547.261653	1092.50875	0.46686	0.00025549	0.028778	1.5749E-05	0.49564	0.00027124	547.2615277026393	31.285	1.248	30.915	30.243	31.491	-0.37026					42	26	2	0	0	0	0.73177	1	11184	11184		10.074	2.7847	1	3750000			23567	6504	14867	14953	22674	22674					-0.03380045524295383
PGAPEPSPGGP	11	Unmodified	_PGAPEPSPGGP_					0	0	0		ENST00000288774.7_1_1:2336406-2336715:-|nuORF	ENST00000288774.7_1_1:2336406-2336715:-|nuORF	ENST00000288774.7_1_1:2336406-2336715:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	481.7330017089844	2	481.732532	961.45051	0.14519	6.9945E-05	0.23994	0.00011559	0.38513	0.00018553	481.7326382219397	31.457	0.67423	31.087	30.765	31.439	-0.37026					21	12	3	0	0	0	0.64329	1	11389	11389		30.637	2.1497	1	3455600			23568	6957	14868	14954	22675	22675					-0.03175682378889633
PGAPEPSPGGP	11	Unmodified	_PGAPEPSPGGP_					0	0	0		ENST00000288774.7_1_1:2336406-2336715:-|nuORF	ENST00000288774.7_1_1:2336406-2336715:-|nuORF	ENST00000288774.7_1_1:2336406-2336715:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	481.732532	961.45051	0.15378	7.4083E-05	0.05433	2.6173E-05	0.20811	0.00010026	481.7327256711484	31.413	0.57449	31.143	30.803	31.378	-0.27028	0.02782	-0.00013854	NaN	30.637	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5075400			23569	6957	14868	14954							-0.03175682378889633
PGAPGEPGPQ	10	Unmodified	_PGAPGEPGPQ_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1;COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant;COL8A1|p.P576Lfs*20|1|0.09|ENSG00000144810|chr3:99795624-99795624|C/-|frameshift_variant;COL8A1|p.H599Mfs*24|2|0.46|ENSG00000144810|chr3:99795690-99795690|C/-|frameshift_variant	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-MSMS	HCT116MG_D190212_S2	2	453.71923828125	2	453.719424	905.424296	0.05252	2.383E-05	-0.42885	-0.00019458	-0.37633	-0.00017075	453.7194295758733	20.163	1.4638	19.788	18.882	20.346	-0.37503					66	27	4	0	0	0	0.26262	1	6836	6836		53.833	2.203	1	51349000			23570	3885	14869	14955	22676	22676					-0.03219951550386213
PGAPGEPGPQ	10	Unmodified	_PGAPGEPGPQ_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1;COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant;COL8A1|p.P576Lfs*20|1|0.09|ENSG00000144810|chr3:99795624-99795624|C/-|frameshift_variant;COL8A1|p.H599Mfs*24|2|0.46|ENSG00000144810|chr3:99795690-99795690|C/-|frameshift_variant	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-MSMS	HCT116MG_D190212_S4	4	453.719482421875	2	453.719424	905.424296	0.28674	0.0001301	-0.034622	-1.5709E-05	0.25212	0.00011439	453.71931708398284	20.009	2.1734	19.816	18.55	20.724	-0.19368					109	41	4	0	0	0	0.11091	1	6639	6639		71.922	6.6873	1	70370000			23571	3885	14869	14955	22677	22677					-0.03219951550386213
PGAPGEPGPQ	10	Unmodified	_PGAPGEPGPQ_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1;COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant;COL8A1|p.P576Lfs*20|1|0.09|ENSG00000144810|chr3:99795624-99795624|C/-|frameshift_variant;COL8A1|p.H599Mfs*24|2|0.46|ENSG00000144810|chr3:99795690-99795690|C/-|frameshift_variant	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	453.719424	905.424296	0.033803	1.5337E-05	0.058208	2.641E-05	0.092011	4.1747E-05	453.7194151265325	19.746	1.1998	19.746	19.027	20.227	0	-0.068564	4.2226E-05	NaN	71.922	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7136000			23572	3885	14869	14955							-0.03219951550386213
PGAPGLAGPA	10	Unmodified	_PGAPGLAGPA_					0	0	0		COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant;COL7A1|p.P2298Lfs*90|1|0.18|ENSG00000114270|chr3:48572678-48572678|G/-|frameshift_variant;COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant;nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1;ENST00000487017.5_1_3:48609337-48621784:-|nuORF	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	404.2218322753906	2	404.221603	806.428653	-0.16162	-6.533E-05	0.80701	0.00032621	0.64539	0.00026088	404.22184608967564	21.319	0.20627	20.936	20.807	21.013	-0.38288					9	3	3	0	0	0	0.64871	1	7525	7525		24.674	5.2349	1	10723000			23573	530	14870	14956	22678	22678					0.017695576631808763
PGAPGRPGAP	10	Unmodified	_PGAPGRPGAP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MSMS	HCT116MG_D190212_S2	2	438.7378234863281	2	438.737951	875.46135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.104	1	18.735	18.235	19.235	-0.3695								0	0	0	0.048319	1	6605	6605		104.8	3.0772	1		+		23574	13018	14871	14957	22679	22679					0.018637647860373363
PGAPKGEP	8	Unmodified	_PGAPKGEP_					0	0	0		nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	nc|ENSG00000130669|O96013-3|PAK4	MSMS	HCT116MG_D190212_S1	1	376.876708984375	2	376.700503	751.386454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.088	1	27.088	26.588	27.588	0								0	0	0	0.8837	1	9815	9815		15.768	4.6538	1				23575	9461	14872	14958	22680	22680					0.0008158225481338377
PGAPLALTALP	11	Unmodified	_PGAPLALTALP_					0	0	0		ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	MULTI-SECPEP	HCT116MG_D190212_S4	4	511.47222900390625	2	510.808042	1019.60153	0.21369	0.00010916	4.2293	0.0021604	4.443	0.0022695	510.8118811770066	48.097	0.52168	47.728	47.308	47.83	-0.36907					12	10	2	0	0	0	0.36452	1	17633	17633		1.4819	1.4819	1	2181100			23576	5219	14873	14959	22681	22681					0.09251503999746546
PGAPNQQAAP	10	Unmodified	_PGAPNQQAAP_					0	0	0		ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	475.4004211425781	2	475.738148	949.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.7	1	17.344	16.844	17.844	-0.35647								0	0	0	0.88269	1	6040	6040		18.135	5.6034	1				23577	18734	14874	14960	22682	22682					-0.01500860284772898
PGAPPERAQQ	10	Unmodified	_PGAPPERAQQ_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-MSMS	HCT116MG_D190212_S4	4	525.4879760742188	2	525.76998	1049.52541	-0.24052	-0.00012646	1.0687	0.00056187	0.82813	0.00043541	525.7705486179738	15.395	0.48366	15.233	14.926	15.409	-0.16173					13	9	2	0	0	0	0.87641	1	4878	4878		4.3292	0	1	2120600	+		23578	10761	14875	14961	22683	22683					0.0026250015232562873
PGAPQEKNGVH	11	Unmodified	_PGAPQEKNGVH_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	HCT116MG_D190212_S2	2	567.28955078125	2	567.288537	1132.56252	0.5084	0.00028841	0.47887	0.00027166	0.98727	0.00056007	567.28857373925	24.544	0.57232	24.164	23.979	24.551	-0.38003					20	10	4	0	0	0	0.70991	1	8792	8792		18.146	3.741	1	33179000			23579	5280	14876	14962	22684	22684					0.0015417169809097686
PGAPQEKNGVH	11	Unmodified	_PGAPQEKNGVH_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	HCT116MG_D190212_S3	3	567.288818359375	2	567.288537	1132.56252	0.38521	0.00021853	0.06961	3.9489E-05	0.45482	0.00025802	567.2885471885367	24.451	1.1974	24.367	24.081	25.278	-0.083694					39	22	4	0	0	0	0.69401	1	8642	8642		24.021	2.4836	1	42416000			23580	5280	14876	14962	22685	22685					0.0015417169809097686
PGAPQEKNGVH	11	Unmodified	_PGAPQEKNGVH_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	HCT116MG_D190212_S3	3	1133.570556640625	1	1133.5698	1132.56252	0.35305	0.0004002	0.090204	0.00010225	0.44325	0.00050245	1133.569668192206	24.416	0.31215	24.332	24.185	24.497	-0.083694					9	5	2	0	0	0	0.69401	1	8700	8700		24.021	0.23079	1	1998900			23581	5280	14876	14962	22686	22686					0.0015417169809097686
PGAPQEKNGVH	11	Unmodified	_PGAPQEKNGVH_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	HCT116MG_D190212_S4	4	567.2891235351562	2	567.288537	1132.56252	0.62698	0.00035568	-0.17501	-9.9283E-05	0.45196	0.00025639	567.2884165186998	24.58	0.62254	24.311	23.978	24.601	-0.26881					31	11	4	0	0	0	0.69401	1	8614	8614		24.021	4.7636	1	36738000			23582	5280	14876	14962	22687	22687					0.0015417169809097686
PGAPQLGFDQP	11	Unmodified	_PGAPQLGFDQP_					0	0	0			REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MSMS	HCT116MG_D190212_S3	3	564.2817993164062	2	563.780013	1125.54547	0.51747	0.00029174	-0.26932	-0.00015184	0.24815	0.0001399	564.2813145539384	26.482	0.72912	26.333	25.89	26.619	-0.14924					17	13	2	0	0	0	0.69749	1	9536	9536		22.736	3.4793	1	3306500	+		23583	12716	14877	14963	22688	22688					-0.012277489077177961
PGAPRHPLL	9	Unmodified	_PGAPRHPLL_					0	0	0			REV__ENST00000495234.5_1_9:136295294-136298568:+|nuORF	REV__ENST00000495234.5_1_9:136295294-136298568:+|nuORF	MSMS	HCT116MG_D190212_S1	1	479.20843505859375	2	479.285069	956.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.862	1	19.862	19.362	20.362	0								0	0	0	0.76781	1	6911	6911		8.5933	2.8329	1		+		23584	15169	14878	14964	22689	22689					0.07556903608190169
PGAPSDAEVLH	11	Unmodified	_PGAPSDAEVLH_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;PLCG1|p.L868*|1|0.36|ENSG00000124181|chr20:41169474-41169474|C/-|frameshift_variant;PLCG1|p.L37Vfs*37|1|0.22|ENSG00000124181|chr20:41137749-41137750|TT/-|frameshift_variant;ENST00000490253.1_1_20:39766245-39788406:+|nuORF	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	MULTI-SECPEP	HCT116MG_D190212_S4	4	546.2774658203125	2	546.769645	1091.52474	0.33208	0.00018157	0.67099	0.00036688	1.0031	0.00054845	546.7696228185479	18.008	0.62232	17.833	17.48	18.102	-0.17501					13	11	2	0	0	0	0.33676	1	5888	5888		29.082	0.58707	1	825260			23585	2831	14879	14965	22690	22690					-0.017363392873676275
PGAPTPPPN	9	Unmodified	_PGAPTPPPN_					0	0	0		nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	MSMS	HCT116MG_D190212_S4	4	424.2175598144531	2	424.21906	846.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.924	1	23.666	23.166	24.166	-0.25816								0	0	0	0.74436	1	8402	8402		16.942	6.1184	1				23586	9428	14880	14966	22691	22691					-0.005787461994259502
PGAQAQADHLP	11	Unmodified	_PGAQAQADHLP_					0	0	0		ENSG00000114745|ENST00000319283|GORASP1;ENST00000441302.6_1_3:39139729-39142014:-|nuORF	ENSG00000114745|ENST00000319283|GORASP1	ENSG00000114745|ENST00000319283|GORASP1	MULTI-MSMS	HCT116MG_D190212_S4	4	552.8062744140625	2	552.775262	1103.53597	0.44992	0.0002487	-1.0239	-0.00056597	-0.57394	-0.00031726	552.7745042683983	28.837	0.25965	28.496	28.366	28.626	-0.34059					9	4	3	0	0	0	0.70691	1	10338	10338		19.257	1.1106	1	12280000			23587	2431	14881	14967	22692	22692					-0.011655171932488884
PGAQDQFYL	9	Unmodified	_PGAQDQFYL_					0	0	0			REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	MSMS	HCT116MG_D190212_S4	4	519.7462768554688	2	519.748182	1037.48181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.399	1	16.236	15.736	16.736	-0.16364								0	0	0	0.76694	1	5365	5365		11.64	0	1		+		23588	16065	14882	14968	22693	22693					-0.03543109344809636
PGAQEVLIDPG	11	Unmodified	_PGAQEVLIDPG_					0	0	0		ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.Q563Hfs*5|1|0.04|ENSG00000167632|chr8:140300548-140300549|-/ATGCATGTGCA|frameshift_variant	ENSG00000167632|ENST00000438773|TRAPPC9	ENSG00000167632|ENST00000438773|TRAPPC9	MULTI-MSMS	HCT116MG_D190212_S1	1	548.2885131835938	2	548.287671	1094.56079	0.59509	0.00032628	0.57892	0.00031741	1.174	0.0006437	548.2883579738709	31.622	0.31245	31.622	31.388	31.7	0					7	5	2	0	0	0	0.48359	1	11657	11657		47.594	11.088	1	4344300			23589	4940	14883	14969	22694	22694					0.017291178894765835
PGAQGPGPEG	10	Unmodified	_PGAQGPGPEG_					0	0	0		ENST00000589111.5_1_19:39359746-39361880:-|nuORF;nc|ENSG00000187994|Q6ZS11-2|RINL;ENSG00000187994|ENST00000591812|RINL	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	434.2328796386719	2	433.703774	865.392996	0.10425	4.5215E-05	-0.17685	-7.67E-05	-0.072595	-3.1485E-05	433.70370910884293	15.97	0.67612	16.055	15.769	16.445	0.085424					17	12	3	0	0	0	0.29442	1	5383	5383		14.838	3.198	1	3713400			23590	5966	14884	14970	22695	22695					-0.045085245844575184
PGAQGVEPQN	10	Unmodified	_PGAQGVEPQN_					0	0	0		GATAD2B|p.R228W|1|0.24|ENSG00000143614|chr1:153818087-153818087|G/A|missense_variant;ENSG00000143614|ENST00000368655|GATAD2B	GATAD2B|p.R228W|1|0.24|ENSG00000143614|chr1:153818087-153818087|G/A|missense_variant	GATAD2B|p.R228W|1|0.24|ENSG00000143614|chr1:153818087-153818087|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	498.7409362792969	2	498.740888	995.467223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.825	1	17.65	17.15	18.15	-0.17501								0	0	0	0.85468	1	5941	5941		21.747	1.293	1				23591	3821	14885	14971	22696	22696					-0.030691814929582506
PGAQLCWQ	8	Unmodified	_PGAQLCWQ_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MSMS	HCT116MG_D190212_S4	4	451.7140808105469	2	451.713088	901.411622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.105	1	16.935	16.435	17.435	-0.16996								0	0	0	0.8837	1	5650	5650		10.183	0.80027	1		+		23592	12349	14886	14972	22697	22697					-0.04302686214271034
PGAQPAGA	8	Unmodified	_PGAQPAGA_					0	0	0		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-MSMS	HCT116MG_D190212_S4	4	668.336669921875	1	668.336215	667.328939	0.43316	0.0002895	0.24657	0.00016479	0.67973	0.00045429	668.3362653398433	17.837	0.20782	17.662	17.532	17.74	-0.17501					5	3	2	0	0	0	0.84415	1	5973	5973		6.3541	0	1	1514400			23593	4851	14887	14973	22698	22698					-0.01803259950759184
PGAQPGAQPGA	11	Unmodified	_PGAQPGAQPGA_					0	0	0		ENST00000578087.1_1_17:12877406-12884237:+|nuORF;nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44	ENST00000578087.1_1_17:12877406-12884237:+|nuORF	ENST00000578087.1_1_17:12877406-12884237:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	475.738037109375	2	475.738148	949.461744	0.29647	0.00014104	-1.1827	-0.00056267	-0.88627	-0.00042163	475.7381702159848	18.206	1.9177	18.031	16.599	18.517	-0.17501					47	36	2	0	0	0	0.69401	1	5940	5940		24.021	2.4836	1	2122400			23594	837	14888	14974	22699	22699					-0.015008602847615293
PGAQPGASGPP	11	Unmodified	_PGAQPGASGPP_					0	0	0			REV__nc|ENSG00000004487|O60341|KDM1A	REV__nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	HCT116MG_D190212_S3	3	468.23236083984375	2	468.232699	934.450845	0.10838	5.0746E-05	-0.20568	-9.6306E-05	-0.097303	-4.556E-05	468.2325330838812	20.966	0.62644	21.001	20.766	21.393	0.034473					16	11	2	0	0	0	0.69028	1	7418	7418		25.399	4.9457	1	4931200	+		23595	10467	14889	14975	22700	22700					-0.01900262659046348
PGAQRSSYSPG	11	Unmodified	_PGAQRSSYSPG_					0	0	0			REV__ENST00000245414.8_1_5:131819304-131819655:-|nuORF	REV__ENST00000245414.8_1_5:131819304-131819655:-|nuORF	MSMS	HCT116MG_D190212_S4	4	553.7643432617188	2	553.764894	1105.51524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.289	1	22.061	21.561	22.561	-0.22777								0	0	0	0.93374	1	7745	7745		14.838	0	1		+		23596	14570	14890	14976	22701	22701					-0.03330107572924135
PGAQRTFF	8	Unmodified	_PGAQRTFF_					0	0	0		nc|ENSG00000292277|Q9UJ98-2|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;ENST00000404291.3_1_7:74995623-75024339:+|nuORF;ENST00000429726.2_7:74299379-74299868:-|nuORF;ENST00000423834.6_1_7:72469123-72469612:-|nuORF;ENST00000569650.1_1_7:72469123-72470067:-|nuORF;ENST00000380775.3_7:74298994-74299868:-|nuORF;ENST00000359898.5_7:74299379-74304447:-|nuORF;nc|ENSG00000205583|P0CL83|STAG3L1	nc|ENSG00000292277|Q9UJ98-2|STAG3	nc|ENSG00000292277|Q9UJ98-2|STAG3	MSMS	HCT116MG_D190212_S3	3	462.1466064453125	2	462.240327	922.466101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.119	1	17.203	16.703	17.703	0.084467								0	0	0	0.8837	1	5729	5729		15.768	3.2367	1				23597	1178	14891	14977	22702	22702					0.0017664892880020489
PGARAEEPA	9	Unmodified	_PGARAEEPA_					0	0	0		ENST00000487121.1_1_2:47136034-47168791:-|nuORF;ENSG00000180398|ENST00000319466|MCFD2;ENST00000477791.5_1_2:47134810-47142912:-|nuORF	ENST00000487121.1_1_2:47136034-47168791:-|nuORF	ENST00000487121.1_1_2:47136034-47168791:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	449.2249450683594	2	449.224874	896.435195	0.091952	4.1307E-05	-0.047288	-2.1243E-05	0.044664	2.0064E-05	449.2247959813937	17.869	0.46764	17.694	17.428	17.896	-0.17501					19	8	3	0	0	0	0.47829	1	5916	5916		18.135	4.6271	1	5837500			23598	5598	14892	14978	22703	22703					-0.01716549176103399
PGARCGCT	8	Unmodified	_PGARCGCT_					0	0	0		ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	764.3182373046875	1	764.317805	763.310528	0.85448	0.00065309	0.43008	0.00032872	1.2846	0.00098181	764.317957432527	20.133	0.46994	20.133	19.913	20.383	0					12	8	2	0	0	0	0.87576	1	7013	7013		0.79363	0	1	6457900			23599	181	14893	14979	22704	22704					-0.08059461188622663
PGARCGCT	8	Unmodified	_PGARCGCT_					0	0	0		ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	764.3187866210938	1	764.317805	763.310528	0.90373	0.00069074	0.5272	0.00040294	1.4309	0.0010937	764.3181252377757	20.287	0.42139	19.907	19.709	20.13	-0.37949					11	7	2	0	0	0	0.86564	1	7096	7096		2.5775	0	1	3844100			23600	181	14893	14979	22705	22705					-0.08059461188622663
PGARCGCT	8	Unmodified	_PGARCGCT_					0	0	0		ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	764.318115234375	1	764.317805	763.310528	0.467	0.00035694	0.75279	0.00057537	1.2198	0.00093231	764.3181191599953	20.324	0.93716	20.372	19.999	20.936	0.048109					28	17	3	0	0	0	0.86564	1	6996	6996		2.5775	0	1	6551200			23601	181	14893	14979	22706	22706					-0.08059461188622663
PGARCGCT	8	Unmodified	_PGARCGCT_					0	0	0		ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	764.318359375	1	764.317805	763.310528	0.87535	0.00066905	0.45062	0.00034442	1.326	0.0010135	764.3180289733514	20.281	0.62384	20.08	19.729	20.352	-0.20133					17	11	2	0	0	0	0.86564	1	6897	6897		2.5775	0	1	4945400			23602	181	14893	14979	22707	22707					-0.08059461188622663
PGARCGCT	8	Unmodified	_PGARCGCT_					0	0	0		ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	764.317805	763.310528	0.90373	0.00069074	0.5272	0.00040294	1.4309	0.0010937	764.3181252377757	20.287	0.42139	19.907	19.709	20.13	-0.37949	-0.21581	2.3343E-05	NaN	2.5775	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3844100			23603	181	14893	14979							-0.08059461188622663
PGARCGCT	8	Unmodified	_PGARCGCT_					0	0	0		ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	ARHGEF19|p.M94Cfs*67|1|0.43|ENSG00000142632|chr1:16208776-16208776|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	764.317805	763.310528	0.87535	0.00066905	0.45062	0.00034442	1.326	0.0010135	764.3180289733514	20.281	0.62384	20.08	19.729	20.352	-0.20133	-0.04331	-3.5185E-05	NaN	2.5775	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4945400			23604	181	14893	14979							-0.08059461188622663
PGARCPAQEGD	11	Unmodified	_PGARCPAQEGD_					0	0	0			REV__ENST00000392346.6_2_17:80092036-80109722:-|nuORF	REV__ENST00000392346.6_2_17:80092036-80109722:-|nuORF	MSMS	HCT116MG_D190212_S3	3	550.6036987304688	2	550.743105	1099.47166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.221	1	20.269	19.769	20.769	0.048107								0	0	0	0.94416	1	6981	6981		9.3831	1.473	1		+		23605	15310	14894	14980	22708	22708					-0.07410040341687818
PGAREPEPPP	10	Unmodified	_PGAREPEPPP_					0	0	0			REV__ENST00000593124.1_2_19:10514123-10514210:-|nuORF	REV__ENST00000593124.1_2_19:10514123-10514210:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	523.7669677734375	2	523.766906	1045.51926	0.20626	0.00010803	0.88847	0.00046535	1.0947	0.00057338	523.7674655502285	16.958	0.83246	17.042	16.496	17.329	0.084467					20	15	2	0	0	0	0.79392	1	5556	5556		12.532	1.7076	1	1153700	+		23606	16704	14895	14981	22709	22709					-0.0016801807919364364
PGARGGAVP	9	Unmodified	_PGARGGAVP_					0	0	0			REV__ENST00000492950.5_3_1:161129274-161129415:+|nuORF	REV__ENST00000492950.5_3_1:161129274-161129415:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	391.5592346191406	2	391.219395	780.424236	0.10148	3.9699E-05	0.80183	0.00031369	0.90331	0.00035339	391.2197840206951	19.353	0.31273	18.983	18.784	19.096	-0.3695					9	5	2	0	0	0	0.7005	1	6628	6628		5.2307	2.3415	1	5811100	+		23607	16060	14896	14982	22710	22710					0.025240932402766703
PGARIQFQGAP	11	Unmodified	_PGARIQFQGAP_					0	0	0		nc|ENSG00000039600|O94993-2|SOX30;ENSG00000039600|ENST00000265007|SOX30	nc|ENSG00000039600|O94993-2|SOX30	nc|ENSG00000039600|O94993-2|SOX30	MSMS	HCT116MG_D190212_S4	4	571.7349853515625	2	571.309272	1140.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.747	1	22.509	22.009	23.009	-0.23758								0	0	0	0.9414	1	7930	7930		10.824	1.4408	1				23608	999	14897	14983	22711	22711					0.03931352457448156
PGARPREFSA	10	Unmodified	_PGARPREFSA_					0	0	0		ENST00000504670.5_1_3:139108796-139108955:+|nuORF	ENST00000504670.5_1_3:139108796-139108955:+|nuORF	ENST00000504670.5_1_3:139108796-139108955:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	544.787841796875	2	544.285797	1086.55704	0.53474	0.00029105	0.30939	0.0001684	0.84414	0.00045945	544.2858678974392	27.097	0.51954	26.786	26.431	26.95	-0.3114					13	9	2	0	0	0	0.64492	1	9674	9674		24.991	0.97039	1	2165600			23609	8446	14898	14984	22712	22712					0.01722492906287698
PGARPREFSA	10	Unmodified	_PGARPREFSA_					0	0	0		ENST00000504670.5_1_3:139108796-139108955:+|nuORF	ENST00000504670.5_1_3:139108796-139108955:+|nuORF	ENST00000504670.5_1_3:139108796-139108955:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	544.285797	1086.55704	0.48738	0.00026527	0.22037	0.00011994	0.70775	0.00038522	544.2857727343912	27.003	0.4689	26.833	26.547	27.016	-0.16933	0.023912	-6.4848E-05	NaN	24.991	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3589700			23610	8446	14898	14984							0.01722492906287698
PGARWWCRRP	10	Unmodified	_PGARWWCRRP_					0	0	0			REV__ENST00000392557.8_1_14:105677473-105677599:-|nuORF	REV__ENST00000392557.8_1_14:105677473-105677599:-|nuORF	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.889214	1283.64581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.582	1	17.411	16.911	17.911	-0.17047								0	0	0	0.95241	1	5842	5842		4.1895	2.2831	1		+		23611	15312	14899	14985	22713	22713					0.015336296649365977
PGASAELDQP	10	Unmodified	_PGASAELDQP_					0	0	0			REV__ZBTB10|p.L236Sfs*7|1|0.08|ENSG00000205189|chr8:80487515-80487515|G/-|frameshift_variant	REV__ZBTB10|p.L236Sfs*7|1|0.08|ENSG00000205189|chr8:80487515-80487515|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	492.7354431152344	2	492.735271	983.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.366	1	21.148	20.648	21.648	-0.21832								0	0	0	0.72975	1	7371	7371		36.127	9.2434	1		+		23612	14217	14900	14986	22714	22714					-0.03640003587099727
PGASAPERE	9	Unmodified	_PGASAPERE_					0	0	0		ENST00000301244.11_1_19:38755282-38755522:+|nuORF	ENST00000301244.11_1_19:38755282-38755522:+|nuORF	ENST00000301244.11_1_19:38755282-38755522:+|nuORF	MSMS	HCT116MG_D190212_S2	2	457.22216796875	2	457.222331	912.430109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.695	1	17.339	16.839	17.839	-0.35647								0	0	0	0.32965	1	6038	6038		37.974	3.5723	1				23613	7000	14901	14987	22715	22715					-0.0296085303871223
PGASDHRP	8	Unmodified	_PGASDHRP_					0	0	0		ENST00000503552.1_1_1:17316691-17319005:-|nuORF;ENST00000326735.12_1_1:17316691-17319005:-|nuORF	ENST00000503552.1_1_1:17316691-17319005:-|nuORF	ENST00000503552.1_1_1:17316691-17319005:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	418.33990478515625	2	418.704109	835.393664	0.013649	5.715E-06	0.019785	8.2842E-06	0.033435	1.3999E-05	418.7040839871541	17.614	0.67914	17.258	16.97	17.65	-0.35647					21	12	3	0	0	0	0.70465	1	5961	5961		22.453	4.3177	1	15304000			23614	7136	14902	14988	22716	22716					-0.03061685144768944
PGASGEPGAPG	11	Unmodified	_PGASGEPGAPG_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	HCT116MG_D190212_S3	3	896.4118041992188	1	896.410837	895.40356	0.95041	0.00085196	0.97872	0.00087733	1.9291	0.0017293	896.4111324417138	16.091	0.52026	16.176	15.769	16.289	0.085424					11	9	2	0	0	0	0.43102	1	5327	5327		52.268	4.5197	1	934780			23615	1396	14903	14989	22717	22717					-0.04832541930045409
PGASGPAAPS	10	Unmodified	_PGASGPAAPS_					0	0	0		ENSG00000103404|ENST00000219689|USP31;USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant	ENSG00000103404|ENST00000219689|USP31;USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant	ENSG00000103404|ENST00000219689|USP31	MULTI-MSMS	HCT116MG_D190212_S3	3	811.3944091796875	1	811.394458	810.387182	0.9101	0.00073845	-0.090824	-7.3694E-05	0.81927	0.00066475	811.3944310593407	18.97	0.468	19.039	18.875	19.343	0.069157					13	8	3	0	0	0	0.019944	1	6471	6471		120.45	1.5557	1	6971900			23616	1893;18686	14904	14990	22718	22718					-0.025596230961355104
PGASGRPYAQ	10	Unmodified	_PGASGRPYAQ_					0	0	0			REV__GDF11|p.N363Y|1|0.09|ENSG00000135414|chr12:55749745-55749745|A/T|missense_variant	REV__GDF11|p.N363Y|1|0.09|ENSG00000135414|chr12:55749745-55749745|A/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	503.10760498046875	2	502.251423	1002.48829	0.37098	0.00018632	0.58436	0.00029349	0.95533	0.00047982	502.7539054588931	19.881	0.31264	19.929	19.738	20.051	0.048109					8	5	2	0	0	0	0.81435	1	6802	6802		10.824	0	1	1609200	+		23617	16846	14905	14991	22719	22719					-0.01285171393442397
PGASLVLKS	9	Unmodified	_PGASLVLKS_					0	0	0			REV__TECRL|p.F296Sfs*21|1|0.34|ENSG00000205678|chr4:64281505-64281505|A/-|frameshift_variant	REV__TECRL|p.F296Sfs*21|1|0.34|ENSG00000205678|chr4:64281505-64281505|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	436.2652282714844	2	436.26601	870.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.357	1	27.045	26.545	27.545	-0.3114								0	0	0	0.7696	1	9789	9789		2.3027	0	1		+		23618	14230	14906	14992	22720	22720					0.0770297290284816
PGASQWGS	8	Unmodified	_PGASQWGS_					0	0	0		ENSG00000071626|ENST00000233078|DAZAP1;DAZAP1|p.P257Rfs*78|5|0.45|ENSG00000071626|chr19:1430255-1430255|C/-|frameshift_variant;nc|ENSG00000071626|Q96EP5-2|DAZAP1	ENSG00000071626|ENST00000233078|DAZAP1	ENSG00000071626|ENST00000233078|DAZAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	790.7096557617188	1	789.352594	788.345317	0.85965	0.00067857	-0.085222	-6.7271E-05	0.77443	0.0006113	789.3523757086846	28.465	0.8835	28.134	27.596	28.479	-0.33138					27	16	2	0	0	0	0.84415	1	10060	10060		6.3541	6.3541	1	3437000			23619	1257	14907	14993	22721	22721					-0.05732178784660391
PGASRLKA	8	Unmodified	_PGASRLKA_					0	0	0		nc|ENSG00000277363|Q9C0H9-2|SRCIN1;ENSG00000277363|ENST00000617146|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MSMS	HCT116MG_D190212_S2	2	400.2438049316406	2	400.24287	798.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.225	1	30.958	30.458	31.458	-0.26704								0	0	0	0.8837	1	11510	11510		2.8892	0	1				23620	6685	14908	14994	22722	22722					0.06388952791428437
PGASRTTGAAP	11	Unmodified	_PGASRTTGAAP_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	HCT116MG_D190212_S3	3	493.25665283203125	2	493.256705	984.498858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.238	1	19.3	18.8	19.8	0.061468								0	0	0	0.82946	1	6585	6585		29.082	6.3453	1				23621	6386	14909	14995	22723	22723					0.005988112609884411
PGASTGWGTDR	11	Unmodified	_PGASTGWGTDR_					0	0	0		ENST00000572786.1_1_16:2948859-2949147:+|nuORF	ENST00000572786.1_1_16:2948859-2949147:+|nuORF	ENST00000572786.1_1_16:2948859-2949147:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2593994140625	2	552.757069	1103.49959	0.37048	0.00020478	0.6366	0.00035188	1.0071	0.00055667	552.7571846455531	18.284	1.0373	18.106	17.632	18.669	-0.17853					28	19	2	0	0	0	0.71532	1	6147	6147		16.149	0.90062	1	1655600			23622	8905	14910	14996	22724	22724					-0.04802394089961126
PGASTYNKNS	10	Unmodified	_PGASTYNKNS_					0	0	0		nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1	MULTI-MSMS	HCT116MG_D190212_S4	4	519.7453002929688	2	519.74617	1037.47779	-0.13886	-7.2171E-05	-1.6223	-0.0008432	-1.7612	-0.00091537	519.7460215473945	17.118	1.1119	16.947	16.217	17.329	-0.17047					43	21	3	0	0	0	0.85662	1	5743	5743		7.2892	0	1	6319100			23623	2001	14911	14997	22725	22725					-0.039451988385280856
PGASVDNYQQP	11	Unmodified	_PGASVDNYQQP_					0	0	0		ENST00000592456.1_1_17:76167504-76168014:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2	ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENST00000592456.1_1_17:76167504-76168014:+|nuORF	MSMS	HCT116MG_D190212_S4	4	588.2699584960938	2	588.27001	1174.52547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.915	1	26.603	26.103	27.103	-0.3114								0	0	0	0.93552	1	9611	9611		13.906	1.6654	1				23624	2174	14912	14998	22726	22726					-0.054815446383372546
PGASWDRLP	9	Unmodified	_PGASWDRLP_					0	0	0		ENST00000568763.1_1_16:30197335-30197653:+|nuORF	ENST00000568763.1_1_16:30197335-30197653:+|nuORF	ENST00000568763.1_1_16:30197335-30197653:+|nuORF	MSMS	HCT116MG_D190212_S2	2	499.75433349609375	2	499.756341	997.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.698	1	16.356	15.856	16.856	-0.34183								0	0	0	0.27628	1	5636	5636		41.84	9.0539	1				23625	8877	14913	14999	22727	22727					-0.0007198338804528248
PGATAHEEAPA	11	Unmodified	_PGATAHEEAPA_					0	0	0			REV__ENST00000328381.9_2_17:29298258-29315050:+|nuORF	REV__ENST00000328381.9_2_17:29298258-29315050:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	526.24755859375	2	525.74617	1049.47779	0.44774	0.0002354	-0.15361	-8.0762E-05	0.29412	0.00015463	525.7460940246865	27.103	0.7272	26.792	26.483	27.21	-0.3114					22	13	2	0	0	0	0.71887	1	9729	9729		14.838	0.93222	1	2930700	+		23626	14913	14914	15000	22728	22728					-0.04497198838521399
PGATAWDNVN	10	Unmodified	_PGATAWDNVN_					0	0	0		ENST00000303375.9_1_17:60770648-60770867:+|nuORF	ENST00000303375.9_1_17:60770648-60770867:+|nuORF	ENST00000303375.9_1_17:60770648-60770867:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	522.7399291992188	2	522.740888	1043.46722	0.33745	0.0001764	-1.4832	-0.00077535	-1.1458	-0.00059895	522.739994590515	19.633	0.30697	19.439	19.226	19.533	-0.19368					8	5	2	0	0	0	0.40515	1	6669	6669		41.84	1.8823	1	2040200			23627	7014	14915	15001	22729	22729					-0.0527718149296561
PGATGRRRRR	10	Unmodified	_PGATGRRRRR_					0	0	0		ZNRF3|p.F222Sfs*21|1|0.05|ENSG00000183579|chr22:29044808-29044808|T/-|frameshift_variant;ZNRF3|p.A281Pfs*58|1|0.48|ENSG00000183579|chr22:29046809-29046809|G/-|frameshift_variant;ZNRF3|p.R493Gfs*77|1|0.47|ENSG00000183579|chr22:29049655-29049655|C/-|frameshift_variant;ZNRF3|p.G791Afs*14|1|0.13|ENSG00000183579|chr22:29050549-29050549|G/-|frameshift_variant;ZNRF3|p.P815Rfs*11|1|0.16|ENSG00000183579|chr22:29050623-29050623|A/-|frameshift_variant;ENSG00000183579|ENST00000544604|ZNRF3	ZNRF3|p.F222Sfs*21|1|0.05|ENSG00000183579|chr22:29044808-29044808|T/-|frameshift_variant	ZNRF3|p.F222Sfs*21|1|0.05|ENSG00000183579|chr22:29044808-29044808|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	591.8551025390625	2	591.855578	1181.6966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.119	1	32.908	32.408	33.408	-0.21135								0	0	0	0.91638	1	12278	12278		12.241	0	1				23628	5724	14916	15002	22730	22730					0.11302295034170129
PGATGSPGEP	10	Unmodified	_PGATGSPGEP_					0	0	0		nc|ENSG00000124749|Q96P44-2|COL21A1;ENST00000488912.5_1_6:55922457-55942902:-|nuORF;COL21A1|p.E790Dfs*24|1|0.04|ENSG00000124749|chr6:56060778-56060779|-/AGAGGATATAAGTGAGGTGAAGAAGAAAACAGATAACA|frameshift_variant;COL21A1|p.G902Mfs*52|1|0.44|ENSG00000124749|chr6:56057828-56057829|-/GGAGGGCCCTCTGGACCTAAGATGGGACATT|frameshift_variant;nc|ENSG00000124749|Q96P44-3|COL21A1;ENSG00000124749|ENST00000244728|COL21A1;ENST00000461489.1_1_6:55933831-55939077:-|nuORF;COL21A1|p.K712Rfs*48|1|0.1|ENSG00000124749|chr6:56064615-56064615|T/-|frameshift_variant	nc|ENSG00000124749|Q96P44-2|COL21A1	nc|ENSG00000124749|Q96P44-2|COL21A1	MULTI-MSMS	HCT116MG_D190212_S4	4	869.399658203125	1	869.399938	868.392661	0.72343	0.00062895	0.024412	2.1224E-05	0.74784	0.00065018	869.3996127406244	19.134	0.2599	18.947	18.765	19.025	-0.18674					7	4	2	0	0	0	0.14986	1	6488	6488		64.236	11.968	1	2317900			23629	516	14917	15003	22731	22731					-0.04679944304325545
PGATLPDVLP	10	Unmodified	_PGATLPDVLP_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MSMS	HCT116MG_D190212_S4	4	490.27606201171875	2	490.276575	978.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.605	1	25.319	24.819	25.819	-0.28643								0	0	0	0.91507	1	9082	9082		12.532	0	1		+		23630	12358	14918	15004	22732	22732					0.04846938211710494
PGATPPTMSQP	11	Unmodified	_PGATPPTMSQP_					0	0	0		KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	542.25927734375	2	542.260599	1082.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.871	1	33.487	32.987	33.987	-0.38426								0	0	0	0.93374	1	12346	12346		14.838	2.3067	1				23631	1080	14919	15005	22733	22733					-0.03130797533731311
PGATSYLLTA	10	Unmodified	_PGATSYLLTA_					0	0	0		FNDC7|p.W183Ffs*14|1|0.06|ENSG00000143107|chr1:108718998-108718999|-/TTGTGTTACCAAA|frameshift_variant;ENSG00000143107|ENST00000370017|FNDC7	FNDC7|p.W183Ffs*14|1|0.06|ENSG00000143107|chr1:108718998-108718999|-/TTGTGTTACCAAA|frameshift_variant	FNDC7|p.W183Ffs*14|1|0.06|ENSG00000143107|chr1:108718998-108718999|-/TTGTGTTACCAAA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	497.2649230957031	2	497.266207	992.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.121	1	15.204	14.704	15.704	0.083271								0	0	0	0.91906	1	4923	4923		11.64	0.81637	1				23632	3785	14920	15006	22734	22734					0.021303478320419345
PGATVAEI	8	Unmodified	_PGATVAEI_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MSMS	HCT116MG_D190212_S1	1	379.20758056640625	2	379.208161	756.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.394	1	19.394	18.894	19.894	0								0	0	0	0.8837	1	6723	6723		6.3541	0	1				23633	956	14921	15007	22735	22735					0.013824490519937171
PGAVAGPR	8	Unmodified	_PGAVAGPR_					0	0	0		nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5	nc|ENSG00000068308|Q96G74-2|OTUD5	nc|ENSG00000068308|Q96G74-2|OTUD5	MULTI-MSMS	HCT116MG_D190212_S2	2	724.411376953125	1	724.410049	723.402772	0.55904	0.00040497	0.25502	0.00018474	0.81406	0.00058971	724.4103108378463	18.658	0.36399	18.295	18.113	18.477	-0.36325					9	6	2	0	0	0	0.095317	1	6441	6441		96.119	0	1	10564000			23634	1200	14922	15008	22736	22736					0.030007082115730555
PGAVMWSHQP	10	Unmodified	_PGAVMWSHQP_					0	0	0			REV__ENST00000571307.1_1_17:5433304-5487319:-|nuORF	REV__ENST00000571307.1_1_17:5433304-5487319:-|nuORF	MSMS	HCT116MG_D190212_S2	2	555.2889404296875	2	555.263476	1108.5124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.308	1	14.982	14.482	15.482	-0.32684								0	0	0	0.82636	1	5077	5077		25.399	6.1423	1		+		23635	11000	14923	15009	22737	22737					-0.03751654231427892
PGAVPAAA	8	Unmodified	_PGAVPAAA_					0	0	0		ENST00000482399.5_1_6:33218678-33219376:-|nuORF	ENST00000482399.5_1_6:33218678-33219376:-|nuORF	ENST00000482399.5_1_6:33218678-33219376:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	653.3626098632812	1	653.361702	652.354425	0.51856	0.0003388	0.21235	0.00013874	0.73091	0.00047755	653.3617680275509	26.723	0.31327	26.37	26.241	26.554	-0.35254					8	5	3	0	0	0	0.8029	1	9687	9687		11.114	0	1	17298000			23636	8262	14924	15010	22738	22738					0.014342145716568666
PGAVYMGY	8	Unmodified	_PGAVYMGY_					0	0	0			REV__ENST00000435930.1_1_9:139730112-139730415:+|nuORF	REV__ENST00000435930.1_1_9:139730112-139730415:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.1976318359375	2	429.196739	856.378925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.832	1	17.657	17.157	18.157	-0.17501								0	0	0	0.8837	1	5944	5944		6.3541	0	1		+		23637	15620	14925	15011	22739	22739					-0.05500893337114121
PGCDGHGG	8	Unmodified	_PGCDGHGG_					0	0	0			REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	699.2554931640625	1	699.251499	698.244223	0.83678	0.00058512	2.0657	0.0014445	2.9025	0.0020296	699.2554453954567	1.6997	0.56408	1.6997	1.4357	1.9997	0					87	58	2	0	0	0	0.88026	1	544	544		0	0	1	628410	+		23638	11755	14926	15012	22740	22740					-0.11696953759008011
PGCDGHGG	8	Unmodified	_PGCDGHGG_					0	0	0			REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	699.2555541992188	1	699.251499	698.244223	0.83666	0.00058503	2.4963	0.0017456	3.333	0.0023306	699.2552538182719	4.791	0.35583	4.791	4.4904	4.8462	0					54	34	2	0	0	0	0.88026	1	1446	1446		0	0	1	644700	+		23639	11755	14926	15012	22741	22741					-0.11696953759008011
PGCDGHGG	8	Unmodified	_PGCDGHGG_					0	0	0			REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	699.25537109375	1	699.251499	698.244223	0.83683	0.00058516	1.942	0.001358	2.7788	0.0019431	699.2554353608272	7.519	0.35703	7.519	7.4028	7.7598	0					56	36	2	0	0	0	0.88026	1	2299	2299		0	0	1	460150	+		23640	11755	14926	15012	22742	22742					-0.11696953759008011
PGCDGHGG	8	Unmodified	_PGCDGHGG_					0	0	0			REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	698.9019165039062	1	699.251499	698.244223	0.86185	0.00060265	2.0889	0.0014607	2.9507	0.0020633	699.2554758322462	13.299	1.3085	13.368	13.103	14.412	0.069158					84	54	2	0	0	0	0.33627	1	4546	4546		0	0	1	519520	+		23641	11755	14926	15012	22743	22743					-0.11696953759008011
PGCDGHGG	8	Unmodified	_PGCDGHGG_					0	0	0			REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	700.7329711914062	1	699.251499	698.244223	0.10062	7.036E-05	3.3505	0.0023429	3.4511	0.0024132	699.2559183004151	15.036	0.89216	14.875	14.232	15.125	-0.16089					27	17	2	0	0	0	0.87576	1	4795	4795		0.79363	0	1	491950	+		23642	11755	14926	15012	22744	22744					-0.11696953759008011
PGCDGHGG	8	Unmodified	_PGCDGHGG_					0	0	0			REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	699.251499	698.244223	0.83683	0.00058516	1.942	0.001358	2.7788	0.0019431	699.2554353608272	7.519	0.35703	7.519	7.4028	7.7598	0	0	0	NaN	0	56	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460150	+		23643	11755	14926	15012							-0.11696953759008011
PGCDGHGG	8	Unmodified	_PGCDGHGG_					0	0	0			REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	699.251499	698.244223	0.83678	0.00058512	2.0657	0.0014445	2.9025	0.0020296	699.2554453954567	1.6997	0.56408	1.6997	1.4357	1.9997	0	0	0	NaN	0	87	58	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628410	+		23644	11755	14926	15012							-0.11696953759008011
PGCDGHGG	8	Unmodified	_PGCDGHGG_					0	0	0			REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	REV__MED13L|p.S1087Lfs*27|1|0.31|ENSG00000123066|chr12:115991696-115991696|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	699.251499	698.244223	0.10064	7.0372E-05	3.1473	0.0022008	3.248	0.0022711	699.2558386946109	13.533	0.81622	13.371	12.97	13.786	-0.16233	0.0013332	0.00033008	NaN	0	80	54	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	664750	+		23645	11755	14926	15012							-0.11696953759008011
PGCGEGCGK	9	Unmodified	_PGCGEGCGK_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MSMS	HCT116MG_D190212_S3	3	404.1590270996094	2	404.159831	806.305109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8902	1	5.9046	5.4046	6.4046	0.01438								0	0	0	0.76967	1	1785	1785		2.0598	1.2661	1		+		23646	14456	14927	15013	22745	22745					-0.10579184771097516
PGCKYKMHLY	10	Unmodified	_PGCKYKMHLY_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	HCT116MG_D190212_S2	2	620.2855834960938	2	620.304287	1238.59402	0.51421	0.00031896	1.1407	0.0007076	1.6549	0.0010266	620.3050286766811	24.646	0.31319	24.266	24.082	24.396	-0.38003					12	5	3	0	0	0	0.86339	1	8791	8791		6.7232	0	1	22630000			23647	5012	14928	15014	22746	22746					-0.01573294863828778
PGCRAPAC	8	Unmodified	_PGCRAPAC_					0	0	0			REV__ENST00000506296.5_1_5:176860397-176860588:+|nuORF	REV__ENST00000506296.5_1_5:176860397-176860588:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	387.6730651855469	2	387.672908	773.331264	0.046232	1.7923E-05	0.80239	0.00031107	0.84862	0.00032899	387.67313135499126	19.525	0.5622	19.334	19.021	19.584	-0.19035					15	10	2	0	0	0	0.78216	1	6644	6644		13.508	0	1	2089800	+		23648	16146	14929	15015	22747	22747					-0.06446870808974836
PGDDVKNAPGQ	11	Unmodified	_PGDDVKNAPGQ_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MSMS	HCT116MG_D190212_S3	3	549.265380859375	2	549.264727	1096.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.107	1	16.192	15.692	16.692	0.085424								0	0	0	0.79559	1	5321	5321		33.445	10.787	1				23649	3289	14930	15016	22748	22748					-0.029495272927761107
PGDDVKNAPGQ	11	Unmodified	_PGDDVKNAPGQ_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MSMS	HCT116MG_D190212_S4	4	549.410400390625	2	549.264727	1096.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.904	1	15.741	15.241	16.241	-0.16364								0	0	0	0.92235	1	5165	5165		17.113	3.2068	1				23650	3289	14930	15016	22749	22749					-0.029495272927761107
PGDDVKNAPGQ	11	Unmodified	_PGDDVKNAPGQ_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MSMS	HCT116MG_D190212_S4	4	549.26513671875	2	549.264727	1096.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.079	1	15.915	15.415	16.415	-0.16364								0	0	0	0.74961	1	5235	5235		36.506	5.2379	1				23651	3289	14930	15016	22750	22750					-0.029495272927761107
PGDECECGTQP	11	Unmodified	_PGDECECGTQP_					0	0	0			REV__ENSG00000275113|ENST00000621907|GAGE2E	REV__ENSG00000275113|ENST00000621907|GAGE2E	MULTI-MSMS	HCT116MG_D190212_S3	3	568.20556640625	2	568.205163	1134.39577	0.41419	0.00023535	-0.36437	-0.00020703	0.049825	2.8311E-05	568.2050659433905	18.884	0.26031	18.953	18.823	19.083	0.069159					6	4	2	0	0	0	0.73696	1	6470	6470		8.1555	1.9497	1	4604600	+		23652	13989	14931	15017	22751	22751					-0.16604805304132242
PGDECECGTQP	11	Unmodified	_PGDECECGTQP_					0	0	0			REV__ENSG00000275113|ENST00000621907|GAGE2E	REV__ENSG00000275113|ENST00000621907|GAGE2E	MSMS	HCT116MG_D190212_S4	4	568.2059936523438	2	568.205163	1134.39577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.945	1	16.778	16.278	17.278	-0.16664								0	0	0	0.94284	1	5585	5585		10.074	0.6908	1		+		23653	13989	14931	15017	22752	22752					-0.16604805304132242
PGDECECGTQP	11	Unmodified	_PGDECECGTQP_					0	0	0			REV__ENSG00000275113|ENST00000621907|GAGE2E	REV__ENSG00000275113|ENST00000621907|GAGE2E	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	568.205163	1134.39577	0.24647	0.00014004	0.4718	0.00026808	0.71827	0.00040812	568.2053318966285	19.001	0.26072	19.001	18.819	19.079	0	0.045106	0.00067129	NaN	8.1555	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3157200	+		23654	13989	14931	15017							-0.16604805304132242
PGDECECGTQP	11	Unmodified	_PGDECECGTQP_					0	0	0			REV__ENSG00000275113|ENST00000621907|GAGE2E	REV__ENSG00000275113|ENST00000621907|GAGE2E	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	568.205163	1134.39577	0.41419	0.00023535	-0.36437	-0.00020703	0.049825	2.8311E-05	568.2050659433905	18.884	0.26031	18.953	18.823	19.083	0.069159	-0.0030548	-0.00027894	NaN	8.1555	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4604600	+		23655	13989	14931	15017							-0.16604805304132242
PGDEGRDDEEE	11	Unmodified	_PGDEGRDDEEE_					0	0	0			REV__CACNA1A|p.T1355Pfs*16|1|0.3|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	REV__CACNA1A|p.T1355Pfs*16|1|0.3|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	624.5730590820312	2	624.236561	1246.45857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.71	1	33.42	32.92	33.92	-0.29013								0	0	0	0.95196	1	12382	12382		5.2969	0.96765	1		+		23656	10075	14932	15018	22753	22753					-0.1548024471073859
PGDEPGQVPP	10	Unmodified	_PGDEPGQVPP_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MSMS	HCT116MG_D190212_S4	4	496.738037109375	2	496.737814	991.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.068	1	26.757	26.257	27.257	-0.3114								0	0	0	0.90023	1	9673	9673		15.847	1.0089	1				23657	8861	14933	15019	22754	22754					-0.03499699724466154
PGDFAAAG	8	Unmodified	_PGDFAAAG_					0	0	0		SOBP|p.S570F|1|0.28|ENSG00000112320|chr6:107634553-107634553|C/T|missense_variant	SOBP|p.S570F|1|0.28|ENSG00000112320|chr6:107634553-107634553|C/T|missense_variant	SOBP|p.S570F|1|0.28|ENSG00000112320|chr6:107634553-107634553|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	705.3194580078125	1	705.320231	704.312954	0.88164	0.00062184	-0.093289	-6.5799E-05	0.78835	0.00055604	705.3199732075436	29.923	1.8842	29.686	28.146	30.03	-0.23655					65	35	3	0	0	0	0.37136	1	10441	10441		52.693	3.0242	1	26561000			23658	18182	14934	15020	22755	22755					-0.0510296618766688
PGDFAAAG	8	Unmodified	_PGDFAAAG_					0	0	0		SOBP|p.S570F|1|0.28|ENSG00000112320|chr6:107634553-107634553|C/T|missense_variant	SOBP|p.S570F|1|0.28|ENSG00000112320|chr6:107634553-107634553|C/T|missense_variant	SOBP|p.S570F|1|0.28|ENSG00000112320|chr6:107634553-107634553|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	705.3201904296875	1	705.320231	704.312954	0.72322	0.0005101	0.15205	0.00010724	0.87527	0.00061734	705.3201280486919	29.927	1.7145	29.57	28.246	29.961	-0.3571					66	32	3	0	0	0	0.21411	1	10383	10383		70.865	14.816	1	23546000			23659	18182	14934	15020	22756	22756					-0.0510296618766688
PGDGQERAPGA	11	Unmodified	_PGDGQERAPGA_					0	0	0		PINK1|p.E203D|1|0.44|ENSG00000158828|chr1:20638063-20638063|A/C|missense_variant	PINK1|p.E203D|1|0.44|ENSG00000158828|chr1:20638063-20638063|A/C|missense_variant	PINK1|p.E203D|1|0.44|ENSG00000158828|chr1:20638063-20638063|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	527.7496337890625	2	527.749244	1053.48394	0.32224	0.00017006	0.40613	0.00021434	0.72837	0.0003844	527.749473360586	16.438	0.52002	16.523	16.237	16.757	0.085424					16	9	3	0	0	0	0.55933	1	5458	5458		39.95	11.455	1	4175800			23660	9749	14935	15021	22757	22757					-0.040666806070021266
PGDGSYSS	8	Unmodified	_PGDGSYSS_					0	0	0		ENST00000291295.13_1_19:47113368-47113650:+|nuORF	ENST00000291295.13_1_19:47113368-47113650:+|nuORF	ENST00000291295.13_1_19:47113368-47113650:+|nuORF	MSMS	HCT116MG_D190212_S2	2	385.15301513671875	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5292	1	4.4402	3.9402	4.9402	-0.089082								0	0	0	0.8837	1	1427	1427		0.69038	0.69038	1				23661	6960	14936	15022	22758	22758					-0.1008018163813631
PGDHSDPL	8	Unmodified	_PGDHSDPL_					0	0	0		nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENSG00000143373|ENST00000336715|ZNF687;ZNF687|p.A639Pfs*74|1|0.27|ENSG00000143373|chr1:151288202-151288202|G/-|frameshift_variant;ZNF687|p.H733Mfs*30|1|0.58|ENSG00000143373|chr1:151288603-151288603|C/-|frameshift_variant;ZNF687|p.R871Gfs*29|1|0.1|ENSG00000143373|chr1:151289512-151289512|A/-|frameshift_variant;ZNF687|p.R939Vfs*10|1|0.08|ENSG00000143373|chr1:151289852-151289852|C/-|frameshift_variant;ZNF687|p.P960Lfs*23|1|0.3|ENSG00000143373|chr1:151289915-151289915|G/-|frameshift_variant	nc|ENSG00000143373|Q8N1G0-2|ZNF687	nc|ENSG00000143373|Q8N1G0-2|ZNF687	MSMS	HCT116MG_D190212_S4	4	419.19146728515625	2	419.1905	836.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.829	1	34.443	33.943	34.943	-0.38606								0	0	0	0.8837	1	12733	12733		2.8892	0	1				23662	3804	14937	15023	22759	22759					-0.058282134757973836
PGDPATPQ	8	Unmodified	_PGDPATPQ_					0	0	0			REV__ENSG00000198934|ENST00000361470|MAGEE1	REV__ENSG00000198934|ENST00000361470|MAGEE1	MULTI-MSMS	HCT116MG_D190212_S4	4	782.3681030273438	1	782.367909	781.360633	0.6849	0.00053585	-0.38111	-0.00029817	0.30379	0.00023768	782.3678888190393	17.919	0.41585	17.744	17.532	17.948	-0.17501					11	7	2	0	0	0	0.74206	1	5993	5993		18.135	1.1927	1	1424600	+		23663	14169	14938	15024	22760	22760					-0.038793119874753756
PGDPNSRP	8	Unmodified	_PGDPNSRP_					0	0	0		ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3	ENSG00000198758|ENST00000361965|EPS8L3	ENSG00000198758|ENST00000361965|EPS8L3	MSMS	HCT116MG_D190212_S4	4	420.2040100097656	2	420.203941	838.39333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.439	1	16.276	15.776	16.776	-0.16364								0	0	0	0.8837	1	5381	5381		5.2307	0.90143	1				23664	6267	14939	15025	22761	22761					-0.032331048646142335
PGDRGPPGRP	10	Unmodified	_PGDRGPPGRP_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant;COL11A1|p.P546Lfs*87|2|0.28|ENSG00000060718|chr1:103008511-103008511|C/-|frameshift_variant;COL11A1|p.G1096Vfs*102|1|0.07|ENSG00000060718|chr1:102940424-102940424|C/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	503.2651062011719	2	503.264865	1004.51518	0.34572	0.00017399	0.0062409	3.1408E-06	0.35196	0.00017713	503.26482730123	15.814	0.2603	15.899	15.769	16.029	0.085423					7	4	2	0	0	0	0.78781	1	5219	5219		13.042	0.80181	1	3124600			23665	510	14940	15026	22762	22762					0.013099372177634905
PGDRGPPGRP	10	Unmodified	_PGDRGPPGRP_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant;COL11A1|p.P546Lfs*87|2|0.28|ENSG00000060718|chr1:103008511-103008511|C/-|frameshift_variant;COL11A1|p.G1096Vfs*102|1|0.07|ENSG00000060718|chr1:102940424-102940424|C/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	503.10760498046875	2	503.264865	1004.51518	0.30449	0.00015324	0.0072816	3.6646E-06	0.31177	0.0001569	503.26490747114224	16.261	0.36391	16.346	16.133	16.497	0.085424					11	6	2	0	0	0	0.75427	1	5373	5373		15.847	1.0089	1	1408200			23666	510	14940	15026	22763	22763					0.013099372177634905
PGDRGPPGRP	10	Unmodified	_PGDRGPPGRP_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant;COL11A1|p.P546Lfs*87|2|0.28|ENSG00000060718|chr1:103008511-103008511|C/-|frameshift_variant;COL11A1|p.G1096Vfs*102|1|0.07|ENSG00000060718|chr1:102940424-102940424|C/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	503.7666320800781	2	503.264865	1004.51518	-0.27542	-0.00013861	0.58162	0.00029271	0.30621	0.0001541	503.2650696785388	16.561	0.38698	16.395	16.221	16.608	-0.16664					12	7	2	0	0	0	0.72678	2	5436	5436;5485		18.146	3.3081	1	863590			23667	510	14940	15026	22764;22765	22764					0.013099372177634905
PGDRSPPGSP	10	Unmodified	_PGDRSPPGSP_					0	0	0		ENST00000540059.1_1_19:45648535-45649727:+|nuORF;ENST00000422370.2_1_19:45648535-45649504:+|nuORF;ENSG00000104866|ENST00000221462|PPP1R37;nc|ENSG00000104866|O75864-2|PPP1R37	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	483.2197570800781	2	483.735606	965.456658	0.18007	8.7107E-05	0.37924	0.00018345	0.55931	0.00027056	483.73565815179546	17.543	0.47024	17.194	16.873	17.343	-0.34933					15	8	2	0	0	0	0.27864	1	5861	5861		17.113	3.605	1	2895000			23668	1959	14941	15027	22766	22766					-0.027451641473703603
PGDRSPPGSP	10	Unmodified	_PGDRSPPGSP_					0	0	0		ENST00000540059.1_1_19:45648535-45649727:+|nuORF;ENST00000422370.2_1_19:45648535-45649504:+|nuORF;ENSG00000104866|ENST00000221462|PPP1R37;nc|ENSG00000104866|O75864-2|PPP1R37	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.7351379394531	2	483.735606	965.456658	0.082729	4.0019E-05	0.026898	1.3012E-05	0.10963	5.303E-05	483.735569668716	16.63	1.0404	16.715	16.133	17.174	0.085424					28	19	2	0	0	0	0.40515	1	5441	5441		41.84	3.2249	1	3019600			23669	1959	14941	15027	22767	22767					-0.027451641473703603
PGDRSPPGSP	10	Unmodified	_PGDRSPPGSP_					0	0	0		ENST00000540059.1_1_19:45648535-45649727:+|nuORF;ENST00000422370.2_1_19:45648535-45649504:+|nuORF;ENSG00000104866|ENST00000221462|PPP1R37;nc|ENSG00000104866|O75864-2|PPP1R37	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	ENST00000540059.1_1_19:45648535-45649727:+|nuORF	MSMS	HCT116MG_D190212_S4	4	483.7355041503906	2	483.735606	965.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.075	1	16.907	16.407	17.407	-0.16772								0	0	0	0.61644	1	5637	5637		41.84	1.8823	1				23670	1959	14941	15027	22768	22768					-0.027451641473703603
PGDSEGDSGS	10	Unmodified	_PGDSEGDSGS_					0	0	0			REV__ENSG00000163909|ENST00000372852|HEYL	REV__ENSG00000163909|ENST00000372852|HEYL	MULTI-SECPEP	HCT116MG_D190212_S3	3	907.4004516601562	1	907.327561	906.320284	0.62181	0.00056419	-0.19198	-0.00017419	0.42983	0.00039	907.327629729725	21.486	0.2646	21.504	21.377	21.641	0.018446					6	4	2	0	0	0	0.30526	1	7497	7497		14.838	1.3304	1	781790	+		23671	12959	14942	15028	22769	22769					-0.1366232316854621
PGDSPTFPRF	10	Unmodified	_PGDSPTFPRF_					0	0	0		ENST00000524856.1_1_11:65374036-65375591:-|nuORF;nc|ENSG00000173327|Q16584-2|MAP3K11;MAP3K11|p.R550Dfs*51|1|0.26|ENSG00000173327|chr11:65606037-65606037|G/-|frameshift_variant;ENSG00000173327|ENST00000309100|MAP3K11	ENST00000524856.1_1_11:65374036-65375591:-|nuORF	ENST00000524856.1_1_11:65374036-65375591:-|nuORF	MSMS	HCT116MG_D190212_S4	4	560.7725219726562	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.074	1	25.783	25.283	26.283	-0.29022								0	0	0	0.91279	1	9271	9271		13.042	0	1				23672	5283	14943	15029	22770	22770					-0.020077315621620073
PGDSQQPGYSQ	11	Unmodified	_PGDSQQPGYSQ_					0	0	0		nc|ENSG00000164458|O15178-2|TBXT;nc|ENSG00000164458|O15178|TBXT;ENSG00000164458|ENST00000366876|TBXT	nc|ENSG00000164458|O15178-2|TBXT	nc|ENSG00000164458|O15178-2|TBXT	MSMS	HCT116MG_D190212_S3	3	582.2507934570312	2	582.251817	1162.48908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.419	1	21.438	20.938	21.938	0.018446								0	0	0	0.93295	1	7463	7463		15.248	3.0078	1				23673	4698	14944	15030	22771	22771					-0.08566421535033442
PGDSQQPGYSQ	11	Unmodified	_PGDSQQPGYSQ_					0	0	0		nc|ENSG00000164458|O15178-2|TBXT;nc|ENSG00000164458|O15178|TBXT;ENSG00000164458|ENST00000366876|TBXT	nc|ENSG00000164458|O15178-2|TBXT	nc|ENSG00000164458|O15178-2|TBXT	MSMS	HCT116MG_D190212_S4	4	582.2523193359375	2	582.251817	1162.48908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.174	1	18.988	18.488	19.488	-0.18674								0	0	0	0.93295	1	6486	6486		15.248	0	1				23674	4698	14944	15030	22772	22772					-0.08566421535033442
PGDVKVLSEK	10	Unmodified	_PGDVKVLSEK_					0	0	0		ENSG00000163512|ENST00000479665|AZI2	ENSG00000163512|ENST00000479665|AZI2	ENSG00000163512|ENST00000479665|AZI2	MULTI-MSMS	HCT116MG_D190212_S3	3	536.16552734375	2	536.305864	1070.59717	0.25234	0.00013533	0.10561	5.6637E-05	0.35795	0.00019197	536.3058608080221	17.166	0.4685	17.251	17.016	17.485	0.084467					17	8	4	0	0	0	0.82332	1	5771	5771		10.074	0.6908	1	21384000			23675	4606	14945	15031	22773	22773					0.06469994786198185
PGEAFEARDSL	11	Unmodified	_PGEAFEARDSL_					0	0	0		nc|ENSG00000164252|Q8N302-2|AGGF1	nc|ENSG00000164252|Q8N302-2|AGGF1	nc|ENSG00000164252|Q8N302-2|AGGF1	MULTI-MSMS	HCT116MG_D190212_S4	4	596.7864990234375	2	596.28566	1190.55677	0.94257	0.00056204	-0.89036	-0.00053091	0.052216	3.1136E-05	596.2851186041975	18.85	1.0892	18.669	17.942	19.031	-0.18052					34	20	2	0	0	0	0.72139	1	6319	6319		13.906	0.86358	1	1806000			23676	9524	14946	15032	22774	22774					-0.030889716042338478
PGEAGALQ	8	Unmodified	_PGEAGALQ_					0	0	0			REV__ENST00000251822.6_1_8:22857446-22857548:+|nuORF	REV__ENST00000251822.6_1_8:22857446-22857548:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	742.5390014648438	1	742.372995	741.365718	0.85094	0.00063171	0.10705	7.9469E-05	0.95799	0.00071118	742.3729109144144	21.252	0.52996	21.252	21.012	21.542	0					14	9	2	0	0	0	0.22398	1	7560	7560		30.225	0	1	10820000	+		23677	14586	14947	15033	22775	22775					-0.015310081248458118
PGEAGPAAGP	10	Unmodified	_PGEAGPAAGP_					0	0	0		ENST00000420820.6_1_1:16812950-16817705:-|nuORF	ENST00000420820.6_1_1:16812950-16817705:-|nuORF	ENST00000420820.6_1_1:16812950-16817705:-|nuORF	MSMS	HCT116MG_D190212_S4	4	412.20196533203125	2	412.200867	822.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.55	1	33.166	32.666	33.666	-0.38426								0	0	0	0.95179	1	12217	12217		4.3292	0	1				23678	7781	14948	15034	22776	22776					-0.031116230961515612
PGEALRPPP	9	Unmodified	_PGEALRPPP_					0	0	0			REV__nc|ENSG00000165806|P55210-2|CASP7	REV__nc|ENSG00000165806|P55210-2|CASP7	MSMS	HCT116MG_D190212_S3	3	467.26055908203125	2	467.261259	932.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.983	1	21.983	21.483	22.483	0.00074577								0	0	0	0.76611	1	7688	7688		14.582	0	1		+		23679	17195	14949	15035	22777	22777					0.03901204617318399
PGEAPGGIA	9	Unmodified	_PGEAPGGIA_					0	0	0			REV__ENST00000589123.5_2_19:3465565-3466177:+|nuORF	REV__ENST00000589123.5_2_19:3465565-3466177:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	768.3886108398438	1	768.388645	767.381368	0.56992	0.00043792	0.31693	0.00024353	0.88685	0.00068145	768.3885107963937	19.755	0.31249	19.815	19.646	19.959	0.05983					8	5	2	0	0	0	0.43045	1	6809	6809		20.871	3.9289	1	3515900	+		23680	16676	14950	15036	22778	22778					-0.011627216077954472
PGEAPGGIA	9	Unmodified	_PGEAPGGIA_					0	0	0			REV__ENST00000589123.5_2_19:3465565-3466177:+|nuORF	REV__ENST00000589123.5_2_19:3465565-3466177:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	768.388645	767.381368	0.56992	0.00043792	0.31693	0.00024353	0.88685	0.00068145	768.3885107963937	19.755	0.31249	19.815	19.646	19.959	0.05983	0.052281	0.00020166	NaN	20.871	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3515900	+		23681	16676	14950	15036							-0.011627216077954472
PGEAPGGIA	9	Unmodified	_PGEAPGGIA_					0	0	0			REV__ENST00000589123.5_2_19:3465565-3466177:+|nuORF	REV__ENST00000589123.5_2_19:3465565-3466177:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	768.388645	767.381368	0.86642	0.00066574	-0.043052	-3.3081E-05	0.82336	0.00063266	768.3886665262233	19.904	0.3119	19.71	19.58	19.892	-0.19367	-0.052281	-7.4942E-05	NaN	20.871	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2506400	+		23682	16676	14950	15036							-0.011627216077954472
PGECPICYMS	10	Unmodified	_PGECPICYMS_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R	REV__ENSG00000140443|ENST00000650285|IGF1R	MSMS	HCT116MG_D190212_S3	3	550.2175903320312	2	550.216488	1098.41842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.289	1	16.375	15.875	16.875	0.085424								0	0	0	0.92272	1	5394	5394		10.824	2.0785	1		+		23683	12294	14951	15037	22779	22779					-0.12684877440233322
PGECPICYMS	10	Unmodified	_PGECPICYMS_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R	REV__ENSG00000140443|ENST00000650285|IGF1R	MSMS	HCT116MG_D190212_S4	4	550.217529296875	2	550.216488	1098.41842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.322	1	17.152	16.652	17.652	-0.17047								0	0	0	0.93854	1	5737	5737		7.2892	2.0586	1		+		23684	12294	14951	15037	22780	22780					-0.12684877440233322
PGECPICYMS	10	Unmodified	_PGECPICYMS_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R	REV__ENSG00000140443|ENST00000650285|IGF1R	MSMS	HCT116MG_D190212_S4	4	550.2176513671875	2	550.216488	1098.41842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.178	1	19.977	19.477	20.477	-0.20133								0	0	0	0.93854	1	6891	6891		7.2892	1.0834	1		+		23685	12294	14951	15037	22781	22781					-0.12684877440233322
PGECPICYMS	10	Unmodified	_PGECPICYMS_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R	REV__ENSG00000140443|ENST00000650285|IGF1R	MSMS	HCT116MG_D190212_S4	4	550.2174682617188	2	550.216488	1098.41842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.93	1	21.712	21.212	22.212	-0.21839								0	0	0	0.92272	1	7600	7600		10.824	6.4947	1		+		23686	12294	14951	15037	22782	22782					-0.12684877440233322
PGEDHKSP	8	Unmodified	_PGEDHKSP_					0	0	0		TIAM2|p.R156H|1|0.31|ENSG00000146426|chr6:155129690-155129690|G/A|missense_variant	TIAM2|p.R156H|1|0.31|ENSG00000146426|chr6:155129690-155129690|G/A|missense_variant	TIAM2|p.R156H|1|0.31|ENSG00000146426|chr6:155129690-155129690|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	434.2049865722656	2	433.703774	865.392996	-0.41405	-0.00017957	0.34449	0.00014941	-0.06956	-3.0168E-05	433.7038227029737	16.064	0.71232	15.901	15.511	16.224	-0.16364					17	13	2	0	0	0	0.3238	1	5296	5296		5.7604	0	1	1603000			23687	18270	14952	15038	22783	22783					-0.04508524584468887
PGEDQAHYNL	10	Unmodified	_PGEDQAHYNL_					0	0	0		ENST00000583204.5_1_17:30348129-30360999:+|nuORF;LRRC37B|p.T873Qfs*22|1|0.32|ENSG00000185158|chr17:32049330-32049330|A/-|frameshift_variant;ENSG00000185158|ENST00000543378|LRRC37B;nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	MSMS	HCT116MG_D190212_S1	1	381.8404541015625	3	381.84036	1142.49925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.847	1	16.847	16.347	17.347	0								0	0	0	0.95179	1	5697	5697		2.086	0	1				23688	5808	14953	15039	22784	22784					-0.06629813809809093
PGEDVEKHPAG	11	Unmodified	_PGEDVEKHPAG_					0	0	0			REV__ENST00000514482.1_1_4:190862182-190882061:+|nuORF	REV__ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	567.7715454101562	2	568.272552	1134.53055	0.41264	0.00023449	0.73626	0.00041839	1.1489	0.00065289	568.273146080189	15.657	0.20855	15.743	15.665	15.873	0.085423					6	3	2	0	0	0	0.36183	1	5162	5162		9.3831	0	1	1848300	+		23689	11374	14954	15040	22785	22785					-0.031332407757190595
PGEEAAPCI	9	Unmodified	_PGEEAAPCI_					0	0	0		ENST00000538771.5_1_19:42806174-42806648:-|nuORF	ENST00000538771.5_1_19:42806174-42806648:-|nuORF	ENST00000538771.5_1_19:42806174-42806648:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	886.398681640625	1	886.397495	885.390218	0.8634	0.00076532	-0.186	-0.00016487	0.6774	0.00060044	886.3971578391745	42.542	0.66817	42.238	42.04	42.708	-0.30352					21	12	2	0	0	0	0.30509	1	15838	15838		30.225	1.738	1	12232000			23690	8678	14955	15041	22786	22786					-0.05706116033661601
PGEEAAPCI	9	Unmodified	_PGEEAAPCI_					0	0	0		ENST00000538771.5_1_19:42806174-42806648:-|nuORF	ENST00000538771.5_1_19:42806174-42806648:-|nuORF	ENST00000538771.5_1_19:42806174-42806648:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	886.3982543945312	1	886.397495	885.390218	0.77815	0.00068975	-0.062651	-5.5534E-05	0.7155	0.00063422	886.3974349926	42.586	0.60485	42.211	41.994	42.599	-0.37565					23	11	3	0	0	0	0.30509	1	15645	15645		30.225	1.738	1	8737100			23691	8678	14955	15041	22787	22787					-0.05706116033661601
PGEGLHPDAT	10	Unmodified	_PGEGLHPDAT_					0	0	0		ARAP3|p.P843Qfs*72|3|0.38|ENSG00000120318|chr5:141666468-141666468|G/-|frameshift_variant;nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENSG00000120318|ENST00000239440|ARAP3	ARAP3|p.P843Qfs*72|3|0.38|ENSG00000120318|chr5:141666468-141666468|G/-|frameshift_variant	ARAP3|p.P843Qfs*72|3|0.38|ENSG00000120318|chr5:141666468-141666468|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	497.23516845703125	2	497.235439	992.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.782	1	24.514	24.014	25.014	-0.26881								0	0	0	0.86471	1	8750	8750		20.454	0	1				23692	164	14956	15042	22788	22788					-0.04020583867247751
PGEGLPLPK	9	Unmodified	_PGEGLPLPK_					0	0	0		DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	DNAJB1|p.Q328Pfs*8|1|0.26|ENSG00000132002|chr19:14515980-14515981|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	454.2286071777344	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.305	1	25.025	24.525	25.525	-0.27958								0	0	0	0.67173	1	8961	8961		20.454	1.0146	1				23693	709	14957	15043	22789	22789					0.06046972902845482
PGEGLSTSVP	10	Unmodified	_PGEGLSTSVP_					0	0	0		MAGEE1|p.F714Lfs*74|1|0.78|ENSG00000198934|chrX:76430067-76430067|T/-|frameshift_variant;MAGEE1|p.E715*|1|0.29|ENSG00000198934|chrX:76430066-76430067|-/T|frameshift_variant;ENSG00000198934|ENST00000361470|MAGEE1	MAGEE1|p.F714Lfs*74|1|0.78|ENSG00000198934|chrX:76430067-76430067|T/-|frameshift_variant	MAGEE1|p.F714Lfs*74|1|0.78|ENSG00000198934|chrX:76430067-76430067|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	472.2401123046875	2	472.24019	942.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.538	1	29.302	28.802	29.802	-0.23655								0	0	0	0.81484	1	10735	10735		26.884	9.9414	1				23694	9311	14958	15044	22790	22790					-0.007708155816999351
PGEGPQAEAHV	11	Unmodified	_PGEGPQAEAHV_					0	0	0			REV__ENST00000542192.5_1_9:136333819-136333927:+|nuORF	REV__ENST00000542192.5_1_9:136333819-136333927:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2590942382812	2	546.259445	1090.50434	0.49194	0.00026872	0.29343	0.00016029	0.78537	0.00042901	546.2592642129317	19.376	0.93086	19.189	18.609	19.54	-0.18674					33	17	3	0	0	0	0.69138	1	6494	6494		24.991	0.97039	1	4892600	+		23695	16376	14959	15045	22791	22791					-0.03729509947220322
PGEGQPDQGP	10	Unmodified	_PGEGQPDQGP_					0	0	0			REV__ENSG00000153930|ENST00000682825|ANKFN1	REV__ENSG00000153930|ENST00000682825|ANKFN1	MSMS	HCT116MG_D190212_S4	4	491.21710205078125	2	491.217246	980.419939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.307	1	25.028	24.528	25.528	-0.27958								0	0	0	0.91906	1	8962	8962		11.64	2.2929	1		+		23696	12663	14960	15046	22792	22792					-0.07105460763943938
PGEGSARPCP	10	Unmodified	_PGEGSARPCP_					0	0	0			REV__KCNH3|p.W987Gfs*47|1|0.28|ENSG00000135519|chr12:49557655-49557655|C/-|frameshift_variant	REV__KCNH3|p.W987Gfs*47|1|0.28|ENSG00000135519|chr12:49557655-49557655|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	485.72418212890625	2	485.724184	969.433814	0.14546	7.0655E-05	-0.11779	-5.7213E-05	0.027673	1.3442E-05	485.72411407143227	15.548	0.78092	15.634	15.144	15.925	0.085423					26	14	3	0	0	0	0.76634	1	5208	5208		14.838	0.93222	1	4196800	+		23697	12096	14961	15047	22793	22793					-0.05212506536508954
PGEKGEKGDPG	11	Unmodified	_PGEKGEKGDPG_					0	0	0		CON__Q3Y5Z3;ENSG00000181092|ENST00000320741|ADIPOQ	CON__Q3Y5Z3	CON__Q3Y5Z3	MULTI-MSMS	HCT116MG_D190212_S2	2	535.3341064453125	2	535.759278	1069.504	0.4545	0.0002435	-1.5219	-0.00081539	-1.0674	-0.00057189	535.7584374301412	16.632	0.31226	16.29	16.152	16.464	-0.34183					8	5	2	0	0	0	0.73696	1	5596	5596		8.1555	0.8663	1	5596500		+	23698	577	14962	15048	22794	22794					-0.027969296670335098
PGEKQEYGK	9	Unmodified	_PGEKQEYGK_					0	0	0			REV__tr|U7SH97|U7SH97_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02207PE=4SV=1	REV__tr|U7SH97|U7SH97_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02207PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	518.2589111328125	2	518.258914	1034.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.218	1	16.304	15.804	16.804	0.085424								0	0	0	0.69648	1	5366	5366		19.257	0.53576	1		+		23699	17677	14963	15049	22795	22795					-0.01259724316082611
PGEKTRYD	8	Unmodified	_PGEKTRYD_					0	0	0		ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	MSMS	HCT116MG_D190212_S1	1	483.2945861816406	2	483.237981	964.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.645	1	15.645	15.145	16.145	0								0	0	0	0.8837	1	5212	5212		8.5933	0	1				23700	854	14964	15050	22796	22796					-0.022242800046228695
PGELPTEGAGP	11	Unmodified	_PGELPTEGAGP_					0	0	0		ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENSG00000180448|ENST00000313093|ARHGAP45	ENSG00000180448|ENST00000313093|ARHGAP45	MULTI-MSMS	HCT116MG_D190212_S4	4	512.7396240234375	2	512.750921	1023.48729	0.16619	8.5212E-05	0.47812	0.00024515	0.6443	0.00033037	512.7509037407041	19.03	0.67583	18.843	18.401	19.077	-0.18674					18	12	2	0	0	0	0.70367	1	6299	6299		20.454	0	1	1959200			23701	5599	14965	15051	22797	22797					-0.023514305529943158
PGEPGEEKIH	10	Unmodified	_PGEPGEEKIH_					0	0	0			REV__ENSG00000282419|ENST00000632372|TEX13D	REV__ENSG00000282419|ENST00000632372|TEX13D	MSMS	HCT116MG_D190212_S3	3	546.7695922851562	2	546.769645	1091.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.143	1	16.228	15.728	16.728	0.085424								0	0	0	0.71095	1	5335	5335		37.075	5.8063	1		+		23702	14473	14966	15052	22798	22798					-0.017363392873676275
PGEPGPAG	8	Unmodified	_PGEPGPAG_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.G1348A|2|0.46|ENSG00000130635|chr9:134815604-134815604|G/C|missense_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;ENSG00000050767|ENST00000390654|COL23A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;ENSG00000050767|ENST00000390654|COL23A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	681.3208618164062	1	681.320231	680.312954	0.36169	0.00024643	0.069075	4.7062E-05	0.43076	0.00029349	681.320125780048	17.51	1.7211	17.161	15.883	17.604	-0.34933					43	32	2	0	0	0	0.19622	1	5916	5916		74.396	7.361	1	9502900			23703	510;527;1054	14967	15053	22799	22799					-0.039989661876575155
PGEPGPAG	8	Unmodified	_PGEPGPAG_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.G1348A|2|0.46|ENSG00000130635|chr9:134815604-134815604|G/C|missense_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1;ENSG00000050767|ENST00000390654|COL23A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;ENSG00000050767|ENST00000390654|COL23A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	681.3198852539062	1	681.320231	680.312954	0.48973	0.00033367	-0.082258	-5.6044E-05	0.40747	0.00027762	681.3201190958385	18.163	2.0736	17.988	16.547	18.621	-0.17501					65	39	2	0	0	0	0.25164	1	5666	5666		63.563	7.0216	1	5053000			23704	510;527;1054	14967	15053	22800	22800					-0.039989661876575155
PGEPGPAGQ	9	Unmodified	_PGEPGPAGQ_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.G1348A|2|0.46|ENSG00000130635|chr9:134815604-134815604|G/C|missense_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	405.1930236816406	2	405.193042	808.371532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.072	1	17.157	16.657	17.657	0.084467								0	0	0	0.1044	1	5710	5710		54.774	14.816	1				23705	510;527	14968	15054	22801	22801					-0.040319096131838705
PGEPGPAGQ	9	Unmodified	_PGEPGPAGQ_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.G1348A|2|0.46|ENSG00000130635|chr9:134815604-134815604|G/C|missense_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	809.3786010742188	1	809.378808	808.371532	0.49063	0.00039711	0.032776	2.6529E-05	0.52341	0.00042364	809.3787481739218	17.101	0.62097	16.931	16.657	17.278	-0.16964					14	11	2	0	0	0	0.031089	1	5659	5659		85.272	7.2877	1	1490300			23706	510;527	14968	15054	22802	22802					-0.040319096131838705
PGEPGPAGQ	9	Unmodified	_PGEPGPAGQ_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.G1348A|2|0.46|ENSG00000130635|chr9:134815604-134815604|G/C|missense_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	405.19256591796875	2	405.193042	808.371532	-0.32034	-0.0001298	0.25076	0.0001016	-0.069584	-2.8195E-05	405.19302479721017	17.152	1.0813	16.981	16.299	17.381	-0.17047					23	20	2	0	0	0	0.11731	1	5663	5663		54.774	14.816	1	998180			23707	510;527	14968	15054	22803	22803					-0.040319096131838705
PGEPGPAGQD	10	Unmodified	_PGEPGPAGQD_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	462.70623779296875	2	462.706514	923.398475	0.10541	4.8773E-05	0.097032	4.4897E-05	0.20244	9.367E-05	462.7063405586577	17.618	0.6763	17.699	17.43	18.106	0.081358					22	12	2	0	0	0	0.37752	1	5927	5927		43.772	7.2662	1	2495500			23708	510;527	14969	15055	22804	22804					-0.06628845792658922
PGEPGPAGQD	10	Unmodified	_PGEPGPAGQD_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	462.7064514160156	2	462.706514	923.398475	-0.18197	-8.42E-05	0.23446	0.00010849	0.052486	2.4286E-05	462.7066029334777	17.746	0.82998	17.571	17.272	18.102	-0.17501					24	15	2	0	0	0	0.33066	1	5908	5908		47.749	7.799	1	2072600			23709	510;527	14969	15055	22805	22805					-0.06628845792658922
PGEPGQKGDA	10	Unmodified	_PGEPGQKGDA_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	478.2283630371094	2	478.227613	954.440674	0.18329	8.7652E-05	0.5452	0.00026073	0.72848	0.00034838	478.2278915274448	19.821	0.26052	19.881	19.75	20.011	0.05983					6	4	2	0	0	0	0.51145	1	6844	6844		34.402	3.7652	1	2463200			23710	528	14970	15056	22806	22806					-0.03836870384282065
PGEPGQVR	8	Unmodified	_PGEPGQVR_					0	0	0			REV__ENST00000494090.6_1_9:116999272-117027356:+|nuORF	REV__ENST00000494090.6_1_9:116999272-117027356:+|nuORF	MSMS	HCT116MG_D190212_S4	4	420.22283935546875	2	420.222134	838.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.313	1	24.055	23.555	24.555	-0.25816								0	0	0	0.65638	1	8560	8560		34.102	7.2188	1		+		23711	16069	14971	15057	22807	22807					0.004037720320980043
PGEPGRPGSP	10	Unmodified	_PGEPGRPGSP_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-MSMS	HCT116MG_D190212_S4	4	475.7383117675781	2	475.738148	949.461744	0.29647	0.00014104	-1.1827	-0.00056267	-0.88627	-0.00042163	475.7381702159848	18.206	1.9177	18.031	16.599	18.517	-0.17501					47	36	2	0	0	0	0.67282	2	5686	5686;6123		22.658	4.285	1	2122400			23712	5965	14972	15058	22808;22809	22808					-0.015008602847615293
PGEPGRPGSPG	11	Unmodified	_PGEPGRPGSPG_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-MSMS	HCT116MG_D190212_S1	1	504.2484436035156	2	504.24888	1006.48321	0.43959	0.00022166	-0.048241	-2.4326E-05	0.39135	0.00019734	504.2487623574032	18.219	1.1992	18.219	17.307	18.506	0					49	22	3	0	0	0	0.71643	1	6090	6090		15.739	2.1238	1	9604800			23713	5965	14973	15059	22810	22810					-0.01977475256046546
PGEPGSAF	8	Unmodified	_PGEPGSAF_					0	0	0		ENST00000484725.1_1_4:75023915-75027541:+|nuORF;ENST00000423607.5_1_4:75023855-75040225:+|nuORF;ENST00000461101.1_1_4:75023855-75025862:+|nuORF;nc|ENSG00000163738|Q9H903-5|MTHFD2L;ENSG00000163738|ENST00000325278|MTHFD2L	ENST00000484725.1_1_4:75023915-75027541:+|nuORF	ENST00000484725.1_1_4:75023915-75027541:+|nuORF	MSMS	HCT116MG_D190212_S4	4	381.1753234863281	2	381.176861	760.339169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.843	1	27.521	27.021	28.021	-0.32157								0	0	0	0.8837	1	9986	9986		4.756	1.8668	1				23714	4626	14974	15060	22811	22811					-0.05058697016193037
PGEPVSCRGVP	11	Unmodified	_PGEPVSCRGVP_					0	0	0			REV__nc|ENSG00000120328|Q9Y5F1-2|PCDHB12	REV__nc|ENSG00000120328|Q9Y5F1-2|PCDHB12	MSMS	HCT116MG_D190212_S4	4	549.2747802734375	2	549.274041	1096.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.212	1	23.954	23.454	24.454	-0.25816								0	0	0	0.90571	1	8519	8519		19.257	1.122	1		+		23715	11476	14975	15061	22812	22812					-0.01087688922552843
PGEQAAGAP	9	Unmodified	_PGEQAAGAP_					0	0	0			REV__nc|ENSG00000171102|Q9NPH6-3|OBP2B	REV__nc|ENSG00000171102|Q9NPH6-3|OBP2B	MULTI-MSMS	HCT116MG_D190212_S3	3	797.3792724609375	1	797.378808	796.371532	0.86621	0.00069069	-0.14673	-0.000117	0.71948	0.0005737	797.3786286449753	29.277	2.7076	29.055	27.431	30.139	-0.22195					70	51	2	0	0	0	0.30509	1	10085	10085		30.225	3.3412	1	4567300	+		23716	17211	14976	15062	22813	22813					-0.03479909613190557
PGEQFRRLD	9	Unmodified	_PGEQFRRLD_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14	REV__nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	HCT116MG_D190212_S3	3	559.2908935546875	2	559.291079	1116.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.754	1	14.836	14.336	15.336	0.081992								0	0	0	0.76902	1	4775	4775		4.3292	0	1		+		23717	17248	14977	15063	22814	22814					0.013984755607225452
PGEQHSPEEQL	11	Unmodified	_PGEQHSPEEQL_					0	0	0			REV__FER1L6|p.G1237Afs*10|1|0.35|ENSG00000214814|chr8:124067790-124067790|A/-|frameshift_variant	REV__FER1L6|p.G1237Afs*10|1|0.35|ENSG00000214814|chr8:124067790-124067790|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	625.785888671875	2	625.786024	1249.55749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.181	1	18.995	18.495	19.495	-0.18674								0	0	0	0.88801	1	6489	6489		21.537	0	1		+		23718	14270	14978	15064	22815	22815					-0.057301769551941106
PGEQRGPA	8	Unmodified	_PGEQRGPA_					0	0	0			REV__ENST00000395648.7_2_11:44956185-44956434:-|nuORF	REV__ENST00000395648.7_2_11:44956185-44956434:-|nuORF	MSMS	HCT116MG_D190212_S1	1	406.20654296875	2	406.206484	810.398415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.024	1	15.024	14.524	15.524	0								0	0	0	0.8837	1	4962	4962		12.532	0	1		+		23719	15348	14979	15065	22816	22816					-0.014368010020007205
PGEQRGPA	8	Unmodified	_PGEQRGPA_					0	0	0			REV__ENST00000395648.7_2_11:44956185-44956434:-|nuORF	REV__ENST00000395648.7_2_11:44956185-44956434:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	406.20635986328125	2	406.206484	810.398415	-0.26494	-0.00010762	0.31981	0.00012991	0.05487	2.2289E-05	406.2065735248166	14.699	0.3651	14.379	14.192	14.557	-0.31952					13	6	3	0	0	0	0.63727	1	4851	4851		29.082	1.4528	1	2295800	+		23720	15348	14979	15065	22817	22817					-0.014368010020007205
PGERAPSLPP	10	Unmodified	_PGERAPSLPP_					0	0	0		ENST00000262613.9_1_17:72764813-72765158:+|nuORF	ENST00000262613.9_1_17:72764813-72765158:+|nuORF	ENST00000262613.9_1_17:72764813-72765158:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	511.47247314453125	2	510.777274	1019.53999	0.54438	0.00027806	-0.48072	-0.00024554	0.063654	3.2513E-05	510.77857432017714	20.618	0.15585	20.618	20.54	20.696	0					4	2	2	0	0	0	0.3029	1	7200	7200		6.7232	0	1	1340300			23721	6868	14980	15066	22818	22818					0.031005723004682295
PGERAPSLPP	10	Unmodified	_PGERAPSLPP_					0	0	0		ENST00000262613.9_1_17:72764813-72765158:+|nuORF	ENST00000262613.9_1_17:72764813-72765158:+|nuORF	ENST00000262613.9_1_17:72764813-72765158:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	510.777274	1019.53999	0.24332	0.00012428	3.1883	0.0016285	3.4317	0.0017528	510.77886183547935	21.319	0.20658	20.936	20.859	21.065	-0.38288	0.23581	2.1361E-05	NaN	6.7232	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5822600			23722	6868	14980	15066							0.031005723004682295
PGERAPSLPP	10	Unmodified	_PGERAPSLPP_					0	0	0		ENST00000262613.9_1_17:72764813-72765158:+|nuORF	ENST00000262613.9_1_17:72764813-72765158:+|nuORF	ENST00000262613.9_1_17:72764813-72765158:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	510.777274	1019.53999	0.22401	0.00011442	3.2032	0.0016361	3.4272	0.0017505	510.77896573316264	20.755	0.20782	20.546	20.396	20.604	-0.20959	-0.15398	3.6535E-05	NaN	6.7232	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1387100			23723	6868	14980	15066							0.031005723004682295
PGERDERPPT	10	Unmodified	_PGERDERPPT_					0	0	0		ENSG00000072832|ENST00000324989|CRMP1;CRMP1|p.F275Lfs*28|1|0.3|ENSG00000072832|chr4:5839665-5839665|A/-|frameshift_variant	ENSG00000072832|ENST00000324989|CRMP1	ENSG00000072832|ENST00000324989|CRMP1	MULTI-MSMS	HCT116MG_D190212_S4	4	577.784912109375	2	577.283451	1152.55235	0.37313	0.0002154	1.3624	0.00078649	1.7355	0.0010019	577.7850624522355	22.045	0.9344	21.817	21.313	22.247	-0.22777					48	17	4	0	0	0	0.82332	1	7537	7537		10.074	0.6908	1	27369000			23724	1277	14981	15067	22819	22819					-0.01782436027156109
PGERGPPGSP	10	Unmodified	_PGERGPPGSP_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MSMS	HCT116MG_D190212_S3	3	475.7382507324219	2	475.738148	949.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.658	1	17.74	17.24	18.24	0.081358								0	0	0	0.75242	1	5947	5947		34.932	0	1				23725	3311	14982	15068	22820	22820					-0.015008602847501606
PGERLHDQ	8	Unmodified	_PGERLHDQ_					0	0	0			REV__ENST00000449570.6_1_3:9798246-9807816:+|nuORF	REV__ENST00000449570.6_1_3:9798246-9807816:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	476.2358703613281	2	476.235773	950.456993	0.20575	9.7986E-05	-0.32902	-0.00015669	-0.12327	-5.8707E-05	476.2355678525358	15.435	0.41665	15.521	15.352	15.769	0.085423					9	7	2	0	0	0	0.67912	1	5075	5075		25.399	2.663	1	929450	+		23726	15700	14983	15069	22821	22821					-0.02021744427520389
PGESEFYLSLE	11	Unmodified	_PGESEFYLSLE_					0	0	0		tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	tr|U7SM96|U7SM96_FUSNUProteintranslocasesubunitSecAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=secAPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	635.7963256835938	2	635.795526	1269.5765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.063	1	21.098	20.598	21.598	0.034473								0	0	0	0.93717	1	7321	7321		13.042	2.243	1				23727	18349	14984	15070	22822	22822					-0.04750640384122562
PGETAHGPSGP	11	Unmodified	_PGETAHGPSGP_					0	0	0			REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	504.2490234375	2	503.733063	1005.45157	0.26929	0.00013565	0.36243	0.00018257	0.63172	0.00031822	503.73288971704557	16.386	0.67611	16.471	16.185	16.861	0.085424					17	12	2	0	0	0	0.33676	1	5410	5410		29.082	10.708	1	1463200	+		23728	10237	14985	15071	22823	22823					-0.05093468009977187
PGETHECDPQP	11	Unmodified	_PGETHECDPQP_					0	0	0		ENST00000505904.1_1_3:42700310-42703020:+|nuORF	ENST00000505904.1_1_3:42700310-42703020:+|nuORF	ENST00000505904.1_1_3:42700310-42703020:+|nuORF	MSMS	HCT116MG_D190212_S3	3	605.2479248046875	2	605.245677	1208.4768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.881	1	17.962	17.462	18.462	0.081358								0	0	0	0.94416	1	6037	6037		9.3831	0.63772	1				23729	8456	14986	15072	22824	22824					-0.1190978126974187
PGETLGPA	8	Unmodified	_PGETLGPA_					0	0	0		ENSG00000226490|ENST00000643770|C8orf90	ENSG00000226490|ENST00000643770|C8orf90	ENSG00000226490|ENST00000643770|C8orf90	MSMS	HCT116MG_D190212_S4	4	371.1011047363281	2	371.192511	740.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.249	1	25.948	25.448	26.448	-0.30087								0	0	0	0.8837	1	9342	9342		6.3541	0	1				23730	6488	14987	15073	22825	22825					-0.010101239820869523
PGETRSTFSG	10	Unmodified	_PGETRSTFSG_					0	0	0			REV__ENST00000427931.5_1_7:99156446-99158253:+|nuORF	REV__ENST00000427931.5_1_7:99156446-99158253:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	520.244384765625	2	519.74617	1037.47779	-0.13886	-7.2171E-05	-1.6223	-0.0008432	-1.7612	-0.00091537	519.7460215473945	17.118	1.1119	16.947	16.217	17.329	-0.17047					43	21	3	0	0	0	0.82332	1	5453	5453		10.074	2.7847	1	6319100	+		23731	15564	14988	15074	22826	22826					-0.039451988385280856
PGETVSDP	8	Unmodified	_PGETVSDP_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-MSMS	HCT116MG_D190212_S4	4	401.18426513671875	2	401.184883	800.355213	-0.267	-0.00010711	-1.1211	-0.00044978	-1.3881	-0.00055689	401.1843085124278	17.308	0.30938	17.137	16.967	17.277	-0.17046					7	5	2	0	0	0	0.81097	1	5745	5745		10.183	0	1	1794100	+		23732	13053	14989	15075	22827	22827					-0.05295035569952233
PGEVTAMSE	9	Oxidation (M)	_PGEVTAM(Oxidation (M))SE_		PGEVTAM(1)SE		PGEVTAM(44)SE	0	0	1		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.I2885Dfs*9|1|0.28|ENSG00000181143|chr19:8972486-8972487|-/C|frameshift_variant;MUC16|p.N2936Tfs*6|1|0.17|ENSG00000181143|chr19:8972332-8972332|T/-|frameshift_variant;MUC16|p.H3632Pfs*17|1|0.13|ENSG00000181143|chr19:8965875-8965876|-/G|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	HCT116MG_D190212_S4	4	936.3988647460938	1	936.397889	935.390612	0.62618	0.00058635	0.71229	0.00066699	1.3385	0.0012533	936.398539141899	34.82	0.30684	34.434	34.287	34.594	-0.38605					8	5	2	0	0	0	0.17018	1	12752	12752		44.407	8.3628	1	2587300			23733	5624	14990	15076	22828	22828		121			-0.07966741104428365
PGEWWVWTHWF	11	Unmodified	_PGEWWVWTHWF_					0	0	0		ENST00000367521.5_1_1:183906707-183906932:-|nuORF	ENST00000367521.5_1_1:183906707-183906932:-|nuORF	ENST00000367521.5_1_1:183906707-183906932:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	765.8522338867188	2	765.851304	1529.68806	0.88329	0.00067647	0.50657	0.00038796	1.3899	0.0010644	766.3533754000919	20.461	0.36399	20.26	20.04	20.404	-0.20133					13	6	3	0	0	0	0.74191	1	7030	7030		1.4819	0	1	1570400			23734	7389	14991	15077	22829	22829					-0.05560116445690255
PGEWWVWTHWF	11	Unmodified	_PGEWWVWTHWF_					0	0	0		ENST00000367521.5_1_1:183906707-183906932:-|nuORF	ENST00000367521.5_1_1:183906707-183906932:-|nuORF	ENST00000367521.5_1_1:183906707-183906932:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	510.9034423828125	3	510.903295	1529.68806	0.22121	0.00011301	0.95866	0.00048978	1.1799	0.0006028	511.2384167508929	20.382	0.41593	20.181	19.988	20.404	-0.20133					11	7	2	0	0	0	0.74191	1	7052	7052		1.3296	0	1	3286300			23735	7389	14991	15077	22830	22830					-0.05560116445690255
PGFCWSWLRGP	11	Unmodified	_PGFCWSWLRGP_					0	0	0		ENST00000608517.1_1_1:178694567-178695308:-|nuORF	ENST00000608517.1_1_1:178694567-178695308:-|nuORF	ENST00000608517.1_1_1:178694567-178695308:-|nuORF	MSMS	HCT116MG_D190212_S4	4	653.3134155273438	2	653.3135	1304.61245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.94	1	23.682	23.182	24.182	-0.25816								0	0	0	0.95023	1	8409	8409		6.2058	0.47393	1				23736	9127	14992	15078	22831	22831					-0.02767416897631847
PGFGGARNPA	10	Unmodified	_PGFGGARNPA_					0	0	0		nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MSMS	HCT116MG_D190212_S4	4	472.2400817871094	2	472.240858	942.467164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.736	1	25.445	24.945	25.945	-0.29022								0	0	0	0.84381	1	9134	9134		23.148	0	1				23737	1645	14993	15079	22832	22832					-0.006371367023007224
PGFHPHPGPNY	11	Unmodified	_PGFHPHPGPNY_					0	0	0		nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;KLF4|p.D429Lfs*13|1|0.08|ENSG00000136826|chr9:107485905-107485906|TC/-|frameshift_variant	nc|ENSG00000136826|O43474-4|KLF4	nc|ENSG00000136826|O43474-4|KLF4	MULTI-MSMS	HCT116MG_D190212_S3	3	611.4091186523438	2	610.285797	1218.55704	0.48299	0.00029476	-0.68555	-0.00041838	-0.20256	-0.00012362	610.2842774734067	33.96	0.51974	33.666	33.3	33.819	-0.29419					16	9	3	0	0	0	0.73364	1	12443	12443		9.3831	0.78985	1	7279000			23738	3436	14994	15080	22833	22833					-0.04349507093729699
PGGAEAGP	8	Unmodified	_PGGAEAGP_					0	0	0		ENST00000476558.7_1_10:32735108-32735258:+|nuORF	ENST00000476558.7_1_10:32735108-32735258:+|nuORF	ENST00000476558.7_1_10:32735108-32735258:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	655.34130859375	1	655.304581	654.297304	0.74843	0.00049045	0.39267	0.00025732	1.1411	0.00074776	655.3046784442614	25.104	0.57211	24.824	24.642	25.214	-0.27958					16	10	2	0	0	0	0.28568	1	8943	8943		11.114	0	1	2589200			23739	8206	14995	15081	22834	22834					-0.0436725270470788
PGGAGPSDQPQ	11	Unmodified	_PGGAGPSDQPQ_					0	0	0			REV__ENSG00000126003|ENST00000246229|PLAGL2	REV__ENSG00000126003|ENST00000246229|PLAGL2	MULTI-MSMS	HCT116MG_D190212_S4	4	505.7305603027344	2	505.73052	1009.44649	0.048935	2.4748E-05	-0.83775	-0.00042367	-0.78881	-0.00039893	505.73032010593573	17.886	1.2968	17.711	17.376	18.673	-0.17501					30	24	2	0	0	0	0.71532	1	5938	5938		16.149	0.90062	1	1651000	+		23740	11830	14996	15082	22835	22835					-0.05785771872615442
PGGAKRTR	8	Unmodified	_PGGAKRTR_					0	0	0		ENST00000267859.7_1_15:59974682-59981518:-|nuORF	ENST00000267859.7_1_15:59974682-59981518:-|nuORF	ENST00000267859.7_1_15:59974682-59981518:-|nuORF	MSMS	HCT116MG_D190212_S4	4	421.75152587890625	2	421.751393	841.488233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.06	1	40.683	40.183	41.183	-0.37732								0	0	0	0.8837	1	15087	15087		2.3027	0	1				23741	6909	14997	15083	22836	22836					0.061148733972345326
PGGASFVF	8	Unmodified	_PGGASFVF_					0	0	0			REV__nc|ENSG00000176170|Q9NYA1-3|SPHK1	REV__nc|ENSG00000176170|Q9NYA1-3|SPHK1	MSMS	HCT116MG_D190212_S4	4	391.1971740722656	2	391.197596	780.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.53	1	34.144	33.644	34.644	-0.38558								0	0	0	0.8837	1	12612	12612		6.3541	0	1		+		23742	17223	14998	15084	22837	22837					-0.01833516256851908
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	388.127685546875	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2446	1	1.2446	0.74456	1.7446	0								0	0	0	0.8837	1	381	381		0	0	1				23743	5493	14999	15085	22838	22838					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	388.1274108886719	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2368	1	3.2368	2.7368	3.7368	0								0	0	0	0.8837	1	974	974		0	0	1				23744	5493	14999	15085	22839	22839					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	388.12774658203125	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.7528	1	3.7528	3.2528	4.2528	0								0	0	0	0.8837	1	1128	1128		0	0	1				23745	5493	14999	15085	22840	22840					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	388.1273193359375	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9016	1	4.9016	4.4016	5.4016	0								0	0	0	0.8837	1	1478	1478		0	0	1				23746	5493	14999	15085	22841	22841					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	388.1278991699219	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5473	1	5.5473	5.0473	6.0473	0								0	0	0	0.8837	1	1669	1669		0	0	1				23747	5493	14999	15085	22842	22842					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	388.12738037109375	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9903	1	7.9903	7.4903	8.4903	0								0	0	0	0.8837	1	2411	2411		0	0	1				23748	5493	14999	15085	22843	22843					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	388.1274719238281	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3948	1	3.3327	2.8327	3.8327	-0.062129								0	0	0	0.8837	1	1083	1083		0.79363	0	1				23749	5493	14999	15085	22844	22844					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	388.12762451171875	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6273	1	3.5652	3.0652	4.0652	-0.062129								0	0	0	0.8837	1	1147	1147		0	0	1				23750	5493	14999	15085	22845	22845					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	388.1274719238281	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.298	1	5.1498	4.6498	5.6498	-0.14816								0	0	0	0.8837	1	1674	1674		0	0	1				23751	5493	14999	15085	22846	22846					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	388.127685546875	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8575	1	5.7093	5.2093	6.2093	-0.14816								0	0	0	0.8837	1	1858	1858		0	0	1				23752	5493	14999	15085	22847	22847					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	388.1276550292969	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4	1	6.2254	5.7254	6.7254	-0.17458								0	0	0	0.8837	1	2020	2020		0	0	1				23753	5493	14999	15085	22848	22848					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	388.1276550292969	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.5089	1	7.2931	6.7931	7.7931	-0.21581								0	0	0	0.8837	1	2355	2355		0	0	1				23754	5493	14999	15085	22849	22849					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	388.12774658203125	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.44	1	12.143	11.643	12.643	-0.29721								0	0	0	0.8837	1	4067	4067		0	0	1				23755	5493	14999	15085	22850	22850					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	388.1279296875	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.684	1	14.763	14.263	15.263	0.079683								0	0	0	0.8837	1	4746	4746		0.79363	0	1				23756	5493	14999	15085	22851	22851					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	388.1278991699219	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.445	1	15.53	15.03	16.03	0.085423								0	0	0	0.8837	1	5054	5054		0	0	1				23757	5493	14999	15085	22852	22852					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	387.83905029296875	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.255	1	22.255	21.755	22.755	0.00074577								0	0	0	0.8837	1	7798	7798		0.79363	0	1				23758	5493	14999	15085	22853	22853					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	388.1275939941406	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.774	1	62.551	62.051	63.051	-0.22315								0	0	0	0.8837	1	23980	23980		0	0	1				23759	5493	14999	15085	22854	22854					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	388.1275634765625	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.846	1	63.64	63.14	64.14	-0.20569								0	0	0	0.8837	1	24335	24335		0	0	1				23760	5493	14999	15085	22855	22855					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	388.12786865234375	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8139	1	4.5493	4.0493	5.0493	-0.26456								0	0	0	0.8837	1	1476	1476		0	0	1				23761	5493	14999	15085	22856	22856					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	388.12786865234375	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8544	1	5.5929	5.0929	6.0929	-0.26151								0	0	0	0.8837	1	1790	1790		0	0	1				23762	5493	14999	15085	22857	22857					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	388.12744140625	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.449	1	10.259	9.7589	10.759	-0.18973								0	0	0	0.8837	1	3207	3207		0	0	1				23763	5493	14999	15085	22858	22858					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	388.12762451171875	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.521	1	13.359	12.859	13.859	-0.16233								0	0	0	0.8837	1	4244	4244		0	0	1				23764	5493	14999	15085	22859	22859					-0.1536433083929296
PGGCSCDH	8	Unmodified	_PGGCSCDH_					0	0	0		SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant;ENSG00000178235|ENST00000674365|SLITRK1	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	SLITRK1|p.I350F|1|0.32|ENSG00000178235|chr13:83880460-83880460|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	388.12744140625	2	388.128531	774.242508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.394	1	15.232	14.732	15.732	-0.16173								0	0	0	0.8837	1	4959	4959		0	0	1				23765	5493	14999	15085	22860	22860					-0.1536433083929296
PGGEGVARYS	10	Unmodified	_PGGEGVARYS_					0	0	0			REV__ENST00000461352.5_1_2:73172212-73286292:-|nuORF	REV__ENST00000461352.5_1_2:73172212-73286292:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	496.7438049316406	2	496.743431	991.472308	0.27537	0.00013679	0.061987	3.0792E-05	0.33736	0.00016758	496.74342837413343	23.113	0.76937	23.073	22.73	23.5	-0.03968					20	14	2	0	0	0	0.35312	1	8114	8114		45.74	9.2337	1	4203800	+		23766	15782	15000	15086	22861	22861					-0.02376877630342733
PGGFEDRTQPA	11	Unmodified	_PGGFEDRTQPA_					0	0	0		ENST00000507668.6_1_5:79438905-79439037:-|nuORF	ENST00000507668.6_1_5:79438905-79439037:-|nuORF	ENST00000507668.6_1_5:79438905-79439037:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	587.779052734375	2	587.778002	1173.54145	0.50125	0.00029462	-0.18269	-0.00010738	0.31856	0.00018724	587.7779825635547	26.213	1.0921	25.92	25.512	26.604	-0.29371					39	20	3	0	0	0	0.74084	1	9267	9267		6.7232	0.51738	1	6948900			23767	8471	15001	15087	22862	22862					-0.03837838401409499
PGGFLGRGP	9	Unmodified	_PGGFLGRGP_					0	0	0		ENSG00000129946|ENST00000264554|SHC2	ENSG00000129946|ENST00000264554|SHC2	ENSG00000129946|ENST00000264554|SHC2	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	2	429.235045	856.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.862	1	23.604	23.104	24.104	-0.25816								0	0	0	0.76641	1	8377	8377		13.508	0	1				23768	3049	15002	15088	22863	22863					0.02156666274379404
PGGGGAFH	8	Unmodified	_PGGGGAFH_					0	0	0			REV__ENSG00000176125|ENST00000388761|UFSP1	REV__ENSG00000176125|ENST00000388761|UFSP1	MULTI-MSMS	HCT116MG_D190212_S4	4	699.3201293945312	1	699.320899	698.313623	0.65114	0.00045535	-2.2636	-0.001583	-1.6124	-0.0011276	699.3189641327757	31.72	0.25967	31.346	31.175	31.435	-0.37421					8	4	2	0	0	0	0.86388	1	11518	11518		2.8892	0	1	6709500	+		23769	13536	15003	15089	22864	22864					-0.047601267479535636
PGGGGAFH	8	Unmodified	_PGGGGAFH_					0	0	0			REV__ENSG00000176125|ENST00000388761|UFSP1	REV__ENSG00000176125|ENST00000388761|UFSP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	699.320899	698.313623	0.99765	0.00069768	-1.8178	-0.0012712	-0.82018	-0.00057357	699.3194325786633	31.525	0.46635	31.276	30.992	31.458	-0.24883	-0.048804	0.00020409	NaN	2.8892	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34281000	+		23770	13536	15003	15089							-0.047601267479535636
PGGGGAFH	8	Unmodified	_PGGGGAFH_					0	0	0			REV__ENSG00000176125|ENST00000388761|UFSP1	REV__ENSG00000176125|ENST00000388761|UFSP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	699.320899	698.313623	0.75299	0.00052658	-2.1913	-0.0015324	-1.4383	-0.0010058	699.3192286844151	31.622	0.46899	31.352	31.169	31.638	-0.27028	0.027187	-5.7074E-05	NaN	2.8892	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49053000	+		23771	13536	15003	15089							-0.047601267479535636
PGGGGAFH	8	Unmodified	_PGGGGAFH_					0	0	0			REV__ENSG00000176125|ENST00000388761|UFSP1	REV__ENSG00000176125|ENST00000388761|UFSP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	699.320899	698.313623	0.65114	0.00045535	-2.2636	-0.001583	-1.6124	-0.0011276	699.3189641327757	31.72	0.25967	31.346	31.175	31.435	-0.37421	0.021616	-0.00010762	NaN	2.8892	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6709500	+		23772	13536	15003	15089							-0.047601267479535636
PGGGGEVVFSC	11	Unmodified	_PGGGGEVVFSC_					0	0	0		ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	ENSG00000120158|ENST00000381750|RCL1	MSMS	HCT116MG_D190212_S2	2	504.81304931640625	2	504.726392	1007.43823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.88	1	16.538	16.038	17.038	-0.34183								0	0	0	0.93717	1	5710	5710		13.042	0	1				23773	2688	15004	15090	22865	22865					-0.06519042113598061
PGGGGGRF	8	Unmodified	_PGGGGGRF_					0	0	0			REV__SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant	REV__SPEN|p.P2055Lfs*9|1|0.32|ENSG00000065526|chr1:15932399-15932399|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	352.90087890625	2	352.677363	703.340172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.487	1	23.103	22.603	23.603	-0.38376								0	0	0	0.8837	1	8373	8373		0.79363	0.10326	1		+		23774	10702	15005	15091	22866	22866					-0.02336437856615703
PGGKRPGR	8	Unmodified	_PGGKRPGR_					0	0	0		ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	824.48486328125	1	824.484945	823.477669	0.70497	0.00058124	0.07575	6.2454E-05	0.78072	0.00064369	824.4848833476475	44.223	0.53191	44.223	44.036	44.568	0					15	9	3	0	0	0	0.86564	1	16736	16736		2.5775	0.27475	1	36311000			23775	6984	15006	15092	22867	22867					0.05886890742806372
PGGKRPGR	8	Unmodified	_PGGKRPGR_					0	0	0		ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	824.484945	823.477669	0.70497	0.00058124	0.07575	6.2454E-05	0.78072	0.00064369	824.4848833476475	44.223	0.53191	44.223	44.036	44.568	0	-0.27379	-4.1278E-05	NaN	2.5775	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36311000			23776	6984	15006	15092							0.05886890742806372
PGGKRPGR	8	Unmodified	_PGGKRPGR_					0	0	0		ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	824.484945	823.477669	1.1017	0.00090835	-0.44612	-0.00036782	0.6556	0.00054053	824.4845552551428	44.646	0.41797	44.561	44.376	44.794	-0.084797	0.064531	-0.00047155	NaN	2.5775	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11473000			23777	6984	15006	15092							0.05886890742806372
PGGKRPGR	8	Unmodified	_PGGKRPGR_					0	0	0		ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	824.484945	823.477669	0.84975	0.00070061	0.6324	0.0005214	1.4822	0.001222	824.485386987393	45.079	0.53357	44.706	44.558	45.091	-0.37277	0.20926	0.00041767	NaN	2.5775	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3612300			23778	6984	15006	15092							0.05886890742806372
PGGLDDRYSLV	11	Unmodified	_PGGLDDRYSLV_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3;PKP3|p.L464Sfs*183|3|0.22|ENSG00000184363|chr11:400077-400077|C/-|frameshift_variant;PKP3|p.L464Pfs*224|1|0.46|ENSG00000184363|chr11:400076-400077|-/C|frameshift_variant	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MSMS	HCT116MG_D190212_S3	3	596.3037719726562	2	596.303852	1190.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.587	1	21.606	21.106	22.106	0.018446								0	0	0	0.93717	1	7530	7530		13.042	0	1				23779	5767	15007	15093	22868	22868					0.0054790529247839
PGGLLALT	8	Unmodified	_PGGLLALT_					0	0	0			REV__ENSG00000162078|ENST00000382280|ZG16B	REV__ENSG00000162078|ENST00000382280|ZG16B	MSMS	HCT116MG_D190212_S3	3	371.22747802734375	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.135	1	41.832	41.332	42.332	-0.30305								0	0	0	0.8837	1	15687	15687		0.79363	0	1		+		23780	12870	15008	15094	22869	22869					0.06263629811314786
PGGLLALT	8	Unmodified	_PGGLLALT_					0	0	0			REV__ENSG00000162078|ENST00000382280|ZG16B	REV__ENSG00000162078|ENST00000382280|ZG16B	MSMS	HCT116MG_D190212_S3	3	371.2268981933594	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.277	1	43.97	43.47	44.47	-0.30759								0	0	0	0.8837	1	16547	16547		0.79363	0	1		+		23781	12870	15008	15094	22870	22870					0.06263629811314786
PGGLPRPA	8	Unmodified	_PGGLPRPA_					0	0	0		ENST00000449351.5_1_20:37075363-37077305:+|nuORF;ENST00000440918.5_1_20:37075363-37076627:+|nuORF	ENST00000449351.5_1_20:37075363-37077305:+|nuORF	ENST00000449351.5_1_20:37075363-37077305:+|nuORF	MSMS	HCT116MG_D190212_S3	3	382.72430419921875	2	382.724313	763.434072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.79	1	24.706	24.206	25.206	-0.083694								0	0	0	0.8837	1	8820	8820		15.768	0	1				23782	7924	15009	15095	22871	22871					0.042892812456557294
PGGNICHLGAP	11	Unmodified	_PGGNICHLGAP_					0	0	0		ENSG00000124444|ENST00000336564|ZNF576	ENSG00000124444|ENST00000336564|ZNF576	ENSG00000124444|ENST00000336564|ZNF576	MULTI-SECPEP	HCT116MG_D190212_S3	3	518.246337890625	2	518.255651	1034.49675	0.17708	9.1773E-05	0.79978	0.00041449	0.97686	0.00050626	518.2561660697711	22.797	0.35202	22.778	22.647	22.999	-0.018869					11	6	2	0	0	0	0.35307	1	8035	8035		13.906	7.1829	1	10914000			23783	2846	15010	15096	22872	22872					-0.019119407484595285
PGGNSRMT	8	Unmodified	_PGGNSRMT_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MSMS	HCT116MG_D190212_S3	3	410.1920166015625	2	410.192519	818.370486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.747	1	34.45	33.95	34.95	-0.29707								0	0	0	0.8837	1	12801	12801		5.7604	0	1				23784	2060	15011	15097	22873	22873					-0.045964472537320944
PGGPAQPPPTP	11	Unmodified	_PGGPAQPPPTP_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000465348.5_1_6:31610527-31611963:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MSMS	HCT116MG_D190212_S4	4	508.26495361328125	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.896	1	30.532	30.032	31.032	-0.36416								0	0	0	0.8787	1	11191	11191		22.736	2.2827	1				23785	6335	15012	15098	22874	22874					0.006768834091303688
PGGPGPEGTGP	11	Unmodified	_PGGPGPEGTGP_					0	0	0			REV__ENSG00000130038|ENST00000440314|CRACR2A	REV__ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	HCT116MG_D190212_S3	3	461.7171936035156	2	461.716882	921.41921	0.35337	0.00016315	-0.62551	-0.00028881	-0.27214	-0.00012565	461.71679125279303	24.503	0.41633	24.419	24.185	24.601	-0.083694					11	7	2	0	0	0	0.64329	1	8716	8716		30.637	1.555	1	3003600	+		23786	11904	15013	15099	22875	22875					-0.04464255412983675
PGGPGSFL	8	Unmodified	_PGGPGSFL_					0	0	0			REV__ENST00000489072.5_1_21:40720263-40720660:-|nuORF	REV__ENST00000489072.5_1_21:40720263-40720660:-|nuORF	MSMS	HCT116MG_D190212_S3	3	366.1888122558594	2	366.189771	730.36499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.212	1	22.213	21.713	22.713	0.00074577								0	0	0	0.8837	1	7781	7781		15.768	4.6538	1		+		23787	16018	15014	15100	22876	22876					-0.01097802773915646
PGGPGSLH	8	Unmodified	_PGGPGSLH_					0	0	0			REV__nc|ENSG00000124006|O75147-1|OBSL1	REV__nc|ENSG00000124006|O75147-1|OBSL1	MULTI-MSMS	HCT116MG_D190212_S1	1	721.3634643554688	1	721.362764	720.355488	0.77038	0.00055572	0.31033	0.00022386	1.0807	0.00077959	721.3628965513956	22.663	0.2604	22.663	22.481	22.741	0					8	4	3	0	0	0	0.76257	1	8037	8037		15.768	0	1	12574000	+		23788	11774	15015	15101	22877	22877					-0.01587571059428683
PGGPPGPK	8	Unmodified	_PGGPPGPK_					0	0	0		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1;COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	nc|ENSG00000084636|Q07092-2|COL16A1;REV__ENSG00000155657|ENST00000589042|TTN;COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	353.69610595703125	2	353.697764	705.380974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.197	1	43.824	43.324	44.324	-0.37373								0	0	0	0.8837	1	16274	16274		0	0	1				23789	12706;513;514;1447	15016	15102	22878	22878					0.016499034629873677
PGGPSPEPAGP	11	Unmodified	_PGGPSPEPAGP_					0	0	0			REV__ENST00000288774.7_1_1:2336406-2336715:-|nuORF	REV__ENST00000288774.7_1_1:2336406-2336715:-|nuORF	MSMS	HCT116MG_D190212_S4	4	481.7326965332031	2	481.732532	961.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.227	1	21.017	20.517	21.517	-0.20959								0	0	0	0.93374	1	7315	7315		14.838	0.25658	1		+		23790	14741	15017	15103	22879	22879					-0.031756823789010014
PGGQCDCK	8	Unmodified	_PGGQCDCK_					0	0	0			REV__ENSG00000102104|ENST00000379984|RS1	REV__ENSG00000102104|ENST00000379984|RS1	MSMS	HCT116MG_D190212_S1	1	404.1591796875	2	404.159831	806.305109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.4854	1	1.4854	0.9854	1.9854	0								0	0	0	0.8837	1	440	440		0.69038	0	1		+		23791	11144	15018	15104	22880	22880					-0.10579184771108885
PGGQCDCK	8	Unmodified	_PGGQCDCK_					0	0	0			REV__ENSG00000102104|ENST00000379984|RS1	REV__ENSG00000102104|ENST00000379984|RS1	MSMS	HCT116MG_D190212_S1	1	404.1592712402344	2	404.159831	806.305109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2388	1	2.2388	1.7388	2.7388	0								0	0	0	0.8837	1	676	676		0.69038	0	1		+		23792	11144	15018	15104	22881	22881					-0.10579184771108885
PGGQCDCK	8	Unmodified	_PGGQCDCK_					0	0	0			REV__ENSG00000102104|ENST00000379984|RS1	REV__ENSG00000102104|ENST00000379984|RS1	MSMS	HCT116MG_D190212_S1	1	404.15911865234375	2	404.159831	806.305109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3292	1	7.3292	6.8292	7.8292	0								0	0	0	0.8837	1	2213	2213		0.69038	0	1		+		23793	11144	15018	15104	22882	22882					-0.10579184771108885
PGGQCDCK	8	Unmodified	_PGGQCDCK_					0	0	0			REV__ENSG00000102104|ENST00000379984|RS1	REV__ENSG00000102104|ENST00000379984|RS1	MSMS	HCT116MG_D190212_S2	2	404.1589660644531	2	404.159831	806.305109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.543	1	4.4539	3.9539	4.9539	-0.089082								0	0	0	0.8837	1	1431	1431		0.69038	0	1		+		23794	11144	15018	15104	22883	22883					-0.10579184771108885
PGGQCDCK	8	Unmodified	_PGGQCDCK_					0	0	0			REV__ENSG00000102104|ENST00000379984|RS1	REV__ENSG00000102104|ENST00000379984|RS1	MSMS	HCT116MG_D190212_S3	3	404.15924072265625	2	404.159831	806.305109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.422	1	64.216	63.716	64.716	-0.20569								0	0	0	0.8837	1	24512	24512		0.69038	0	1		+		23795	11144	15018	15104	22884	22884					-0.10579184771108885
PGGQCDCK	8	Unmodified	_PGGQCDCK_					0	0	0			REV__ENSG00000102104|ENST00000379984|RS1	REV__ENSG00000102104|ENST00000379984|RS1	MSMS	HCT116MG_D190212_S4	4	404.1591491699219	2	404.159831	806.305109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.68008	1	0.41552	-0.08448	0.91552	-0.26456								0	0	0	0.8837	1	221	221		0.69038	0	1		+		23796	11144	15018	15104	22885	22885					-0.10579184771108885
PGGQGGHA	8	Unmodified	_PGGQGGHA_					0	0	0		ENST00000173229.6_1_17:9144472-9144925:+|nuORF	ENST00000173229.6_1_17:9144472-9144925:+|nuORF	ENST00000173229.6_1_17:9144472-9144925:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	680.31005859375	1	680.311063	679.303787	1.1771	0.0008008	-1.2697	-0.00086379	-0.092596	-6.2994E-05	680.3102615525623	32.832	0.26034	32.547	32.404	32.664	-0.2851					7	4	2	0	0	0	0.81821	1	12052	12052		9.3474	4.1168	1	8392500			23797	6716	15019	15105	22886	22886					-0.04869314753341314
PGGQPTHSPLT	11	Unmodified	_PGGQPTHSPLT_					0	0	0		ENST00000473501.1_1_3:196755203-196755518:-|nuORF	ENST00000473501.1_1_3:196755203-196755518:-|nuORF	ENST00000473501.1_1_3:196755203-196755518:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	546.2776489257812	2	546.277638	1090.54072	0.35442	0.00019361	-0.14178	-7.7452E-05	0.21263	0.00011616	546.2774107067165	16.334	0.51998	16.419	16.133	16.653	0.085424					13	9	2	0	0	0	0.43821	1	5477	5477		51.63	11.391	1	6336800			23798	8177	15020	15106	22887	22887					-0.0009263305048534676
PGGSFLDP	8	Unmodified	_PGGSFLDP_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MSMS	HCT116MG_D190212_S1	1	395.19219970703125	2	395.192511	788.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.381	1	22.381	21.881	22.881	0								0	0	0	0.8837	1	7921	7921		15.768	5.5848	1		+		23799	14308	15021	15107	22888	22888					-0.032181239821056806
PGGSLPGPV	9	Unmodified	_PGGSLPGPV_					0	0	0			REV__ENST00000568961.5_1_16:71901919-71917908:-|nuORF	REV__ENST00000568961.5_1_16:71901919-71917908:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	780.4262084960938	1	780.42503	779.417754	0.84027	0.00065577	-0.015207	-1.1868E-05	0.82506	0.0006439	780.4249092480354	32.719	0.72915	32.434	31.935	32.664	-0.28511					27	13	3	0	0	0	0.026974	1	11947	11947		89.427	4.0701	1	32420000	+		23800	16563	15022	15108	22889	22889					0.019221552889121085
PGGSPGPGA	9	Unmodified	_PGGSPGPGA_					0	0	0			REV__ENSG00000116754|ENST00000370949|SRSF11;REV__SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	REV__ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S4	4	696.3311157226562	1	696.33113	695.323853	0.75076	0.00052278	-0.43279	-0.00030137	0.31796	0.00022141	696.3306458976008	20.632	0.5718	20.43	20.144	20.716	-0.20133					14	10	2	0	0	0	0.45549	1	7141	7141		19.439	1.304	1	2482600	+		23801	11593;17594	15023	15109	22890	22890					-0.03599563813384066
PGGSPPGPA	9	Unmodified	_PGGSPPGPA_					0	0	0			REV__ENSG00000182759|ENST00000333480|MAFA	REV__ENSG00000182759|ENST00000333480|MAFA	MULTI-SECPEP	HCT116MG_D190212_S3	3	368.7085876464844	2	368.684853	735.355153	-0.10337	-3.811E-05	-0.15578	-5.7433E-05	-0.25914	-9.5542E-05	368.6847838017319	19.643	0.52095	19.703	19.386	19.907	0.059828					15	9	2	0	0	0	0.15971	1	6750	6750		36.044	0	1	3347000	+		23802	13726	15024	15110	22891	22891					-0.02310990779290023
PGGSPPGPA	9	Unmodified	_PGGSPPGPA_					0	0	0			REV__ENSG00000182759|ENST00000333480|MAFA	REV__ENSG00000182759|ENST00000333480|MAFA	MULTI-MSMS	HCT116MG_D190212_S4	4	736.3629150390625	1	736.36243	735.355153	0.82985	0.00061107	0.14338	0.00010558	0.97323	0.00071665	736.3623496945105	19.841	0.82205	19.647	19.174	19.996	-0.19367					30	15	3	0	0	0	0.0066639	1	6739	6739		123.1	0	1	11917000	+		23803	13726	15024	15110	22892	22892					-0.02310990779290023
PGGSPPGPA	9	Unmodified	_PGGSPPGPA_					0	0	0			REV__ENSG00000182759|ENST00000333480|MAFA	REV__ENSG00000182759|ENST00000333480|MAFA	MULTI-SECPEP	HCT116MG_D190212_S4	4	368.7083740234375	2	368.684853	735.355153	-0.0012911	-4.7602E-07	-0.051679	-1.9053E-05	-0.05297	-1.9529E-05	368.6847275916634	19.866	0.56213	19.672	19.33	19.892	-0.19368					15	10	2	0	0	0	0.12805	1	6768	6768		44.407	0	1	2454500	+		23804	13726	15024	15110	22893	22893					-0.02310990779290023
PGGSRVISH	9	Unmodified	_PGGSRVISH_					0	0	0		nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1	nc|ENSG00000149485|O60427|FADS1	nc|ENSG00000149485|O60427|FADS1	MSMS	HCT116MG_D190212_S3	3	455.24853515625	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.119	1	34.822	34.322	35.322	-0.29707								0	0	0	0.76818	1	12952	12952		7.2892	0.93513	1				23805	4064	15025	15111	22894	22894					0.02491149814761684
PGGVPCDPPG	10	Unmodified	_PGGVPCDPPG_					0	0	0			REV__ENSG00000169592|ENST00000563197|INO80E	REV__ENSG00000169592|ENST00000563197|INO80E	MSMS	HCT116MG_D190212_S2	2	448.20257568359375	2	448.202553	894.390553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.674	1	20.295	19.795	20.795	-0.37949								0	0	0	0.61139	1	7236	7236		42.095	9.7891	1		+		23806	13250	15026	15112	22895	22895					-0.06086696313786888
PGGVPCDPPG	10	Unmodified	_PGGVPCDPPG_					0	0	0			REV__ENSG00000169592|ENST00000563197|INO80E	REV__ENSG00000169592|ENST00000563197|INO80E	MULTI-MSMS	HCT116MG_D190212_S3	3	448.2029724121094	2	448.202553	894.390553	-0.0056424	-2.529E-06	0.36302	0.00016271	0.35738	0.00016018	448.20267991484803	20.224	0.72904	20.272	19.895	20.624	0.048107					21	13	2	0	0	0	0.51573	1	6953	6953		34.102	10.082	1	5089600	+		23807	13250	15026	15112	22896	22896					-0.06086696313786888
PGGVPCDPPG	10	Unmodified	_PGGVPCDPPG_					0	0	0			REV__ENSG00000169592|ENST00000563197|INO80E	REV__ENSG00000169592|ENST00000563197|INO80E	MULTI-MSMS	HCT116MG_D190212_S4	4	448.2026672363281	2	448.202553	894.390553	0.31804	0.00014255	-0.30334	-0.00013596	0.014704	6.5904E-06	448.2023902399723	20.465	0.83156	20.264	19.833	20.664	-0.20133					31	15	3	0	0	0	0.61891	1	6915	6915		26.884	9.9414	1	5451200	+		23808	13250	15026	15112	22897	22897					-0.06086696313786888
PGGVPCDPPG	10	Unmodified	_PGGVPCDPPG_					0	0	0			REV__ENSG00000169592|ENST00000563197|INO80E	REV__ENSG00000169592|ENST00000563197|INO80E	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	448.202553	894.390553	-0.0056424	-2.529E-06	0.36302	0.00016271	0.35738	0.00016018	448.20267991484803	20.224	0.72904	20.272	19.895	20.624	0.048107	0.0038123	0.00046574	NaN	34.102	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5089600	+		23809	13250	15026	15112							-0.06086696313786888
PGGVVTVS	8	Unmodified	_PGGVVTVS_					0	0	0			REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	REV__tr|U7SJW1|U7SJW1_FUSNUFerrousirontransportproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02106PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	358.2012939453125	2	358.202879	714.391205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.996	1	57.996	57.496	58.496	0								0	0	0	0.8837	1	22329	22329		2.5775	0	1		+		23810	17698	15027	15113	22898	22898					0.02258466397574921
PGGVYAGP	8	Unmodified	_PGGVYAGP_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MSMS	HCT116MG_D190212_S4	4	359.0283508300781	2	359.181946	716.34934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.298	1	22.07	21.57	22.57	-0.22777								0	0	0	0.8837	1	7748	7748		6.3541	0	1				23811	5182	15028	15114	22899	22899					-0.02018089290959324
PGGWPNAP	8	Unmodified	_PGGWPNAP_					0	0	0			REV__ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	REV__ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	398.193115234375	2	398.192845	794.371138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.919	1	29.562	29.062	30.062	-0.3571								0	0	0	0.8837	1	10825	10825		10.183	0.83596	1		+		23812	12786	15029	15115	22900	22900					-0.034272845423970466
PGGWSPSF	8	Unmodified	_PGGWSPSF_					0	0	0			REV__TCF19|p.T213Pfs*45|1|0.38|ENSG00000137310|chr6:31161841-31161841|G/-|frameshift_variant	REV__TCF19|p.T213Pfs*45|1|0.38|ENSG00000137310|chr6:31161841-31161841|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	417.6927795410156	2	417.692678	833.370804	-0.039062	-1.6316E-05	0.17729	7.4054E-05	0.13823	5.7738E-05	417.69256673893454	42.162	0.30997	42.094	41.964	42.274	-0.068199					11	5	3	0	0	0	0.60268	1	15963	15963		32.117	5.7757	1	28956000	+		23813	12171	15030	15116	22901	22901					-0.05254704262233645
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1061096191406	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.18033	1	0.18033	-0.31967	0.68033	0								0	0	0	0.8837	1	71	71		0	0	1				23814	7263	15031	15117	22902	22902					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1067810058594	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0378	1	5.0378	4.5378	5.5378	0								0	0	0	0.8837	1	1516	1516		0	0	1				23815	7263	15031	15117	22903	22903					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1069030761719	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1346	1	7.1346	6.6346	7.6346	0								0	0	0	0.8837	1	2152	2152		0	0	1				23816	7263	15031	15117	22904	22904					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.10699462890625	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4317	1	7.4317	6.9317	7.9317	0								0	0	0	0.8837	1	2246	2246		0	0	1				23817	7263	15031	15117	22905	22905					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.10711669921875	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.639	1	7.639	7.139	8.139	0								0	0	0	0.8837	1	2307	2307		0	0	1				23818	7263	15031	15117	22906	22906					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1063537597656	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9462	1	7.9462	7.4462	8.4462	0								0	0	0	0.8837	1	2400	2400		0	0	1				23819	7263	15031	15117	22907	22907					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.10687255859375	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6765	1	8.6765	8.1765	9.1765	0								0	0	0	0.8837	1	2617	2617		0	0	1				23820	7263	15031	15117	22908	22908					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1066589355469	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.178	1	63.178	62.678	63.678	0								0	0	0	0.8837	1	24408	24408		0	0	1				23821	7263	15031	15117	22909	22909					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1068420410156	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.209	1	63.209	62.709	63.709	0								0	0	0	0.8837	1	24420	24420		0	0	1				23822	7263	15031	15117	22910	22910					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1064758300781	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.728	1	63.728	63.228	64.228	0								0	0	0	0.8837	1	24616	24616		0	0	1				23823	7263	15031	15117	22911	22911					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1072692871094	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.29	1	64.29	63.79	64.79	0								0	0	0	0.8837	1	24806	24806		0	0	1				23824	7263	15031	15117	22912	22912					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.1063537597656	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.794	1	64.794	64.294	65.294	0								0	0	0	0.8837	1	24974	24974		0	0	1				23825	7263	15031	15117	22913	22913					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1066589355469	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.12159	1	0.11765	-0.38235	0.61765	-0.0039395								0	0	0	0.8837	1	48	48		0	0	1				23826	7263	15031	15117	22914	22914					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1063537597656	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.6606	1	0.65509	0.15509	1.1551	-0.0055099								0	0	0	0.8837	1	220	220		0	0	1				23827	7263	15031	15117	22915	22915					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1065673828125	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.4766	1	4.3875	3.8875	4.8875	-0.089082								0	0	0	0.8837	1	1414	1414		0	0	1				23828	7263	15031	15117	22916	22916					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1066589355469	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8117	1	4.693	4.193	5.193	-0.11871								0	0	0	0.8837	1	1523	1523		0	0	1				23829	7263	15031	15117	22917	22917					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.10687255859375	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0035	1	4.8848	4.3848	5.3848	-0.11871								0	0	0	0.8837	1	1582	1582		0	0	1				23830	7263	15031	15117	22918	22918					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1066589355469	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8528	1	5.7046	5.2046	6.2046	-0.14816								0	0	0	0.8837	1	1856	1856		0	0	1				23831	7263	15031	15117	22919	22919					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1064147949219	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.0788	1	5.9043	5.4043	6.4043	-0.17458								0	0	0	0.8837	1	1919	1919		0	0	1				23832	7263	15031	15117	22920	22920					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1065979003906	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3624	1	6.1878	5.6878	6.6878	-0.17458								0	0	0	0.8837	1	2007	2007		0	0	1				23833	7263	15031	15117	22921	22921					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1065979003906	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3859	1	7.1701	6.6701	7.6701	-0.21581								0	0	0	0.8837	1	2316	2316		0	0	1				23834	7263	15031	15117	22922	22922					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.10650634765625	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4259	1	8.1948	7.6948	8.6948	-0.23116								0	0	0	0.8837	1	2636	2636		0	0	1				23835	7263	15031	15117	22923	22923					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1067199707031	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7252	1	8.4812	7.9812	8.9812	-0.24401								0	0	0	0.8837	1	2725	2725		0	0	1				23836	7263	15031	15117	22924	22924					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1063232421875	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9877	1	9.723	9.223	10.223	-0.26472								0	0	0	0.8837	1	3140	3140		0	0	1				23837	7263	15031	15117	22925	22925					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.10693359375	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.819	1	11.53	11.03	12.03	-0.28953								0	0	0	0.8837	1	3831	3831		0	0	1				23838	7263	15031	15117	22926	22926					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1064453125	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.695	1	12.398	11.898	12.898	-0.29721								0	0	0	0.8837	1	4153	4153		0	0	1				23839	7263	15031	15117	22927	22927					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.1070251464844	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63	1	62.87	62.37	63.37	-0.12924								0	0	0	0.8837	1	24425	24425		0	0	1				23840	7263	15031	15117	22928	22928					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.10687255859375	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.599	1	63.476	62.976	63.976	-0.12264								0	0	0	0.8837	1	24649	24649		0	0	1				23841	7263	15031	15117	22929	22929					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.10693359375	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.71	1	64.597	64.097	65.097	-0.11256								0	0	0	0.8837	1	25019	25019		0	0	1				23842	7263	15031	15117	22930	22930					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S3	3	390.1066589355469	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.708	1	4.7305	4.2305	5.2305	0.022513								0	0	0	0.8837	1	1415	1415		0	0	1				23843	7263	15031	15117	22931	22931					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S3	3	390.1065979003906	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2331	1	5.2505	4.7505	5.7505	0.017489								0	0	0	0.8837	1	1579	1579		0	0	1				23844	7263	15031	15117	22932	22932					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S3	3	390.10662841796875	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8299	1	8.8505	8.3505	9.3505	0.020599								0	0	0	0.8837	1	2667	2667		0	0	1				23845	7263	15031	15117	22933	22933					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S3	3	389.79449462890625	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.511	1	10.551	10.051	11.051	0.039975								0	0	0	0.8837	1	3186	3186		0	0	1				23846	7263	15031	15117	22934	22934					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.10693359375	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.097745	1	-0.16682	-0.66682	0.33318	-0.26456								0	0	0	0.8837	1	39	39		0	0	1				23847	7263	15031	15117	22935	22935					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1067810058594	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.24526	1	-0.019298	-0.5193	0.4807	-0.26456								0	0	0	0.8837	1	89	89		0	0	1				23848	7263	15031	15117	22936	22936					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1068115234375	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3972	1	1.1326	0.63264	1.6326	-0.26456								0	0	0	0.8837	1	430	430		0	0	1				23849	7263	15031	15117	22937	22937					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1064147949219	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5689	1	3.3044	2.8044	3.8044	-0.26456								0	0	0	0.8837	1	1088	1088		0	0	1				23850	7263	15031	15117	22938	22938					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1060485839844	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0827	1	3.8181	3.3181	4.3181	-0.26456								0	0	0	0.8837	1	1243	1243		0	0	1				23851	7263	15031	15117	22939	22939					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1066589355469	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7926	1	6.5425	6.0425	7.0425	-0.25015								0	0	0	0.8837	1	2079	2079		0	0	1				23852	7263	15031	15117	22940	22940					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1064758300781	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3251	1	7.0788	6.5788	7.5788	-0.24631								0	0	0	0.8837	1	2241	2241		0	0	1				23853	7263	15031	15117	22941	22941					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1064147949219	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9307	1	8.71	8.21	9.21	-0.22071								0	0	0	0.8837	1	2732	2732		0	0	1				23854	7263	15031	15117	22942	22942					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1067199707031	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.455	1	9.2453	8.7453	9.7453	-0.20971								0	0	0	0.8837	1	2891	2891		0	0	1				23855	7263	15031	15117	22943	22943					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1072082519531	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4668	1	9.2571	8.7571	9.7571	-0.20971								0	0	0	0.8837	1	2895	2895		0	0	1				23856	7263	15031	15117	22944	22944					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1065673828125	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.526	1	10.336	9.8358	10.836	-0.18973								0	0	0	0.8837	1	3229	3229		0	0	1				23857	7263	15031	15117	22945	22945					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	389.7947082519531	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.777	1	10.588	10.088	11.088	-0.18973								0	0	0	0.8837	1	3312	3312		0	0	1				23858	7263	15031	15117	22946	22946					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1065979003906	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.092	1	10.91	10.41	11.41	-0.18135								0	0	0	0.8837	1	3421	3421		0	0	1				23859	7263	15031	15117	22947	22947					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.2120361328125	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.358	1	14.197	13.697	14.697	-0.16089								0	0	0	0.8837	1	4541	4541		2.8892	2.8892	1				23860	7263	15031	15117	22948	22948					-0.19606711754920525
PGHCCCCG	8	Unmodified	_PGHCCCCG_					0	0	0		ENST00000496381.5_1_20:31967493-31989268:-|nuORF;ENST00000481964.5_1_20:31981865-31989268:-|nuORF;ENST00000477105.5_1_20:31982885-31989286:-|nuORF;ENST00000346416.6_1_20:31984877-31989364:-|nuORF;ENST00000460043.5_1_20:31973484-31989268:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	ENST00000496381.5_1_20:31967493-31989268:-|nuORF	MSMS	HCT116MG_D190212_S4	4	390.1073913574219	2	390.108229	778.201906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.536	1	16.37	15.87	16.87	-0.16664								0	0	0	0.8837	1	5420	5420		2.8892	2.0956	1				23861	7263	15031	15117	22949	22949					-0.19606711754920525
PGHCCQSW	8	Unmodified	_PGHCCQSW_					0	0	0			REV__ENST00000585320.5_1_17:46019001-46022013:+|nuORF	REV__ENST00000585320.5_1_17:46019001-46022013:+|nuORF	MSMS	HCT116MG_D190212_S4	4	459.1722106933594	2	459.173272	916.331992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.588	1	14.427	13.927	14.927	-0.16089								0	0	0	0.8837	1	4633	4633		6.3541	0	1		+		23862	15607	15032	15118	22950	22950					-0.1295207615991103
PGHDPDELSYE	11	Unmodified	_PGHDPDELSYE_					0	0	0			REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	MSMS	HCT116MG_D190212_S4	4	629.76416015625	2	629.764757	1257.51496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.848	1	15.684	15.184	16.184	-0.16331								0	0	0	0.95581	1	5142	5142		3.2813	0.28607	1		+		23863	12191	15033	15119	22951	22951					-0.10349572083396197
PGHDPVRERLK	11	Unmodified	_PGHDPVRERLK_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MSMS	HCT116MG_D190212_S1	1	652.364501953125	2	652.36511	1302.71567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.312	1	26.312	25.812	26.812	0								0	0	0	0.95113	1	9502	9502		5.7319	0.83484	1				23864	1285	15034	15120	22952	22952					0.07641786814565421
PGHEWWRSMYS	11	Unmodified	_PGHEWWRSMYS_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MSMS	HCT116MG_D190212_S3	3	718.3157348632812	2	718.314229	1434.6139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.235	1	31.956	31.456	32.456	-0.27841								0	0	0	0.95023	1	11807	11807		6.2058	0.47393	1		+		23865	14137	15035	15121	22953	22953					-0.08601827599500211
PGHGAAGP	8	Unmodified	_PGHGAAGP_					0	0	0			REV__ENST00000524914.5_1_14:67666571-67666850:+|nuORF	REV__ENST00000524914.5_1_14:67666571-67666850:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	663.3203125	1	663.320899	662.313623	0.58788	0.00038995	-1.9235	-0.0012759	-1.3357	-0.00088597	663.3193142885132	24.385	0.26052	24.004	23.874	24.135	-0.38003					7	4	2	0	0	0	0.68942	1	8776	8776		24.21	7.1234	1	6338400	+		23866	12385	15036	15122	22954	22954					-0.03104126747950886
PGHKDRPQ	8	Unmodified	_PGHKDRPQ_					0	0	0			REV__ENST00000375483.3_1_20:31669343-31670768:+|nuORF	REV__ENST00000375483.3_1_20:31669343-31670768:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	467.745361328125	2	467.746308	933.478063	0.074818	3.4996E-05	-2.4998	-0.0011693	-2.4249	-0.0011343	467.74571169537256	27.408	0.31152	27.093	26.947	27.259	-0.31464					6	5	2	0	0	0	0.31507	1	9835	9835		5.2307	0	1	1556800	+		23867	15216	15037	15123	22955	22955					0.008662656719934603
PGHPRRWDEGE	11	Unmodified	_PGHPRRWDEGE_					0	0	0		ENST00000537143.5_1_11:72525490-72533952:+|nuORF	ENST00000537143.5_1_11:72525490-72533952:+|nuORF	ENST00000537143.5_1_11:72525490-72533952:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	668.313232421875	2	668.313074	1334.6116	0.618	0.00041302	-0.62607	-0.00041841	-0.0080706	-5.3937E-06	668.3125268560458	19.279	0.36385	19.092	18.817	19.181	-0.18674					9	6	2	0	0	0	0.36475	1	6548	6548		6.2058	2.9245	1	1038900			23868	8672	15038	15124	22956	22956					-0.04232540012958452
PGHPRRWDEGE	11	Unmodified	_PGHPRRWDEGE_					0	0	0		ENST00000537143.5_1_11:72525490-72533952:+|nuORF	ENST00000537143.5_1_11:72525490-72533952:+|nuORF	ENST00000537143.5_1_11:72525490-72533952:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	668.313074	1334.6116	0.77107	0.00051532	-1.7306	-0.0011566	-0.9595	-0.00064125	668.3117165733274	18.988	0.26031	19.057	18.823	19.083	0.069159	-0.017625	-0.0012925	NaN	6.2058	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1648300			23869	8672	15038	15124							-0.04232540012958452
PGHRGGGY	8	Unmodified	_PGHRGGGY_					0	0	0			REV__ATXN1|p.H55Y|1|0.43|ENSG00000124788|chr6:16328148-16328148|G/A|missense_variant	REV__ATXN1|p.H55Y|1|0.43|ENSG00000124788|chr6:16328148-16328148|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	800.3817749023438	1	800.379811	799.372535	0.82213	0.00065802	2.9342	0.0023484	3.7563	0.0030065	800.3815918725116	37.073	0.25764	36.959	36.757	37.014	-0.11478					7	4	2	0	0	0	0.84759	1	13903	13903		5.7604	0	1	17772000	+		23870	10015	15039	15125	22957	22957					-0.03517650453602528
PGHRGGGY	8	Unmodified	_PGHRGGGY_					0	0	0			REV__ATXN1|p.H55Y|1|0.43|ENSG00000124788|chr6:16328148-16328148|G/A|missense_variant	REV__ATXN1|p.H55Y|1|0.43|ENSG00000124788|chr6:16328148-16328148|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	800.379811	799.372535	0.82213	0.00065802	2.9342	0.0023484	3.7563	0.0030065	800.3815918725116	37.073	0.25764	36.959	36.757	37.014	-0.11478	0.0038024	2.4372E-05	NaN	5.7604	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17772000	+		23871	10015	15039	15125							-0.03517650453602528
PGHRGGGY	8	Unmodified	_PGHRGGGY_					0	0	0			REV__ATXN1|p.H55Y|1|0.43|ENSG00000124788|chr6:16328148-16328148|G/A|missense_variant	REV__ATXN1|p.H55Y|1|0.43|ENSG00000124788|chr6:16328148-16328148|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		1	800.379811	799.372535	0.83428	0.00066774	2.8671	0.0022947	3.7013	0.0029625	800.3824401948959	37.252	0.2081	36.951	36.821	37.029	-0.30137	-0.0038024	-2.9337E-05	NaN	5.7604	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3771000	+		23872	10015	15039	15125							-0.03517650453602528
PGHSQYLDN	9	Unmodified	_PGHSQYLDN_					0	0	0		NAALADL2|p.G139Wfs*23|1|0.31|ENSG00000177694|chr3:175097155-175097156|-/T|frameshift_variant;nc|ENSG00000177694|Q58DX5-2|NAALADL2;ENST00000485853.5_1_3:174577149-174974391:+|nuORF;ENST00000473253.5_1_3:174581768-175298945:+|nuORF;ENSG00000177694|ENST00000454872|NAALADL2	NAALADL2|p.G139Wfs*23|1|0.31|ENSG00000177694|chr3:175097155-175097156|-/T|frameshift_variant	NAALADL2|p.G139Wfs*23|1|0.31|ENSG00000177694|chr3:175097155-175097156|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	515.7617797851562	2	515.733063	1029.45157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.862	1	18.682	18.182	19.182	-0.18052								0	0	0	0.7663	1	6360	6360		13.906	2.2658	1				23873	5470	15040	15126	22958	22958					-0.06197468009986551
PGHTIGGF	8	Unmodified	_PGHTIGGF_					0	0	0			REV__nc|ENSG00000072778|P49748-2|ACADVL	REV__nc|ENSG00000072778|P49748-2|ACADVL	MSMS	HCT116MG_D190212_S3	3	393.2012023925781	2	393.20067	784.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.449	1	18.525	18.025	19.025	0.076334								0	0	0	0.8837	1	6266	6266		15.768	4.6538	1		+		23874	10780	15041	15127	22959	22959					-0.01402998025321267
PGIFLGRPQP	10	Unmodified	_PGIFLGRPQP_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MSMS	HCT116MG_D190212_S3	3	541.3095092773438	2	541.311284	1080.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.89	1	25.762	25.262	26.262	-0.12795								0	0	0	0.92845	1	9264	9264		15.847	9.124	1				23875	3110	15042	15128	22960	22960					0.07093441951133173
PGIMAPPP	8	Unmodified	_PGIMAPPP_					0	0	0		ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;ENST00000557230.1_1_15:25222927-25225203:+|nuORF	ENSG00000128739|ENST00000390687|SNRPN	ENSG00000128739|ENST00000390687|SNRPN	MULTI-SECPEP	HCT116MG_D190212_S2	2	389.6954345703125	2	390.20965	778.404746	-0.026563	-1.0365E-05	4.4744	0.001746	4.4478	0.0017356	390.2116603749722	15.749	0.15675	15.415	15.324	15.48	-0.33451					4	2	2	0	0	0	0.2601	1	5268	5268		24.21	0	1	770780			23876	3012	15043	15129	22961	22961					0.006680009051478919
PGIQGLPGPR	10	Unmodified	_PGIQGLPGPR_					0	0	0		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	MSMS	HCT116MG_D190212_S4	4	496.28826904296875	2	496.287808	990.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.113	1	28.773	28.273	29.273	-0.34059								0	0	0	0.81484	1	10499	10499		26.884	5.137	1				23877	1447	15044	15130	22962	22962					0.06540582399986761
PGIQWDESQAQ	11	Unmodified	_PGIQWDESQAQ_					0	0	0		XYLT2|p.G529Afs*78|21|0.31|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant;nc|ENSG00000015532|Q9H1B5-2|XYLT2;ENSG00000015532|ENST00000017003|XYLT2	XYLT2|p.G529Afs*78|21|0.31|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant	XYLT2|p.G529Afs*78|21|0.31|ENSG00000015532|chr17:50356606-50356606|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	629.787841796875	2	629.788566	1257.56258	0.28613	0.0001802	-0.43003	-0.00027083	-0.1439	-9.0628E-05	629.7884023122933	31.68	0.46768	31.309	30.971	31.439	-0.37026					12	8	2	0	0	0	0.71776	1	11535	11535		15.248	1.6336	1	3052400			23878	926	15045	15131	22963	22963					-0.055898730925719065
PGIRFVHCFMR	11	Unmodified	_PGIRFVHCFMR_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-4|HACE1	REV__nc|ENSG00000085382|Q8IYU2-4|HACE1	MSMS	HCT116MG_D190212_S4	4	454.9007568359375	3	454.902243	1361.6849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.142	1	15.979	15.479	16.479	-0.16364								0	0	0	0.9593	1	5261	5261		1.4551	0.12547	1		+		23879	10921	15046	15132	22964	22964					0.018525939043001927
PGISIGHSSPP	11	Unmodified	_PGISIGHSSPP_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7744750976562	2	524.774731	1047.53491	0.37363	0.00019607	-0.25069	-0.00013155	0.12294	6.4518E-05	524.7746010150073	33.741	0.41508	33.451	33.252	33.667	-0.29013					13	7	2	0	0	0	0.54229	1	12393	12393		41.84	3.8656	1	6159800	+		23880	13653	15047	15133	22965	22965					0.013042684378660852
PGIWPPSPGP	10	Unmodified	_PGIWPPSPGP_					0	0	0		ENST00000469990.1_1_11:555480-556365:-|nuORF	ENST00000469990.1_1_11:555480-556365:-|nuORF	ENST00000469990.1_1_11:555480-556365:-|nuORF	MSMS	HCT116MG_D190212_S4	4	502.7629089355469	2	502.763635	1003.51272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.688	1	22.45	21.95	22.95	-0.23758								0	0	0	0.91906	1	7906	7906		11.64	0.81637	1				23881	8143	15048	15134	22966	22966					0.01110088760083272
PGKDGLNGLPG	11	Unmodified	_PGKDGLNGLPG_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7750854492188	2	512.774731	1023.53491	0.1545	7.9222E-05	0.65715	0.00033697	0.81165	0.00041619	512.7749420309596	27.991	0.57293	27.803	27.517	28.09	-0.18847					16	10	2	0	0	0	0.69749	1	10104	10104		22.736	3.2973	1	3976500			23882	513	15049	15135	22967	22967					0.02408268437852712
PGKEARRRDGP	11	Unmodified	_PGKEARRRDGP_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MSMS	HCT116MG_D190212_S1	1	413.5623779296875	3	413.561932	1237.66397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.749	1	15.749	15.249	16.249	0								0	0	0	0.95113	1	5254	5254		4.7159	2.0847	1		+		23883	10761	15050	15136	22968	22968					0.054640431206507856
PGKFEFLEN	9	Unmodified	_PGKFEFLEN_					0	0	0		tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	tr|U7SH87|U7SH87_FUSNUPenicillin-bindingprotein1AOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02222PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	540.77099609375	2	540.771657	1079.52876	0.47818	0.00025858	0.15746	8.5151E-05	0.63564	0.00034373	540.7716830450739	45.952	0.82276	45.851	45.556	46.378	-0.1014					26	15	2	0	0	0	0.34272	1	17649	17649		26.268	1.2772	1	19643000			23884	18302	15051	15137	22969	22969					-0.007822497936786021
PGKGPGRR	8	Unmodified	_PGKGPGRR_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MSMS	HCT116MG_D190212_S4	4	412.74560546875	2	412.746111	823.477669	0.28308	0.00011684	-0.13876	-5.7273E-05	0.14432	5.9569E-05	412.7459997751305	47.033	2.0956	46.662	46.067	48.163	-0.37038					131	54	5	0	0	0	0.87635	1	17886	17886		0.69038	0	1	547240000	+		23885	11497	15052	15138	22970	22970					0.058868907427950035
PGKHEIQP	8	Unmodified	_PGKHEIQP_					0	0	0		nc|ENSG00000178795|Q6W3E5|GDPD4	nc|ENSG00000178795|Q6W3E5|GDPD4	nc|ENSG00000178795|Q6W3E5|GDPD4	MSMS	HCT116MG_D190212_S3	3	453.2445373535156	2	453.245609	904.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.33	1	24.254	23.754	24.754	-0.076754								0	0	0	0.8837	1	8635	8635		14.582	2.0501	1				23886	9563	15053	15139	22971	22971					0.020606315832424116
PGKKESGEGPA	11	Unmodified	_PGKKESGEGPA_					0	0	0		ABRA|p.E5K|1|0.47|ENSG00000174429|chr8:106770178-106770178|C/T|missense_variant	ABRA|p.E5K|1|0.47|ENSG00000174429|chr8:106770178-106770178|C/T|missense_variant	ABRA|p.E5K|1|0.47|ENSG00000174429|chr8:106770178-106770178|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	528.4989013671875	2	528.769645	1055.52474	0.41476	0.00021931	-0.29385	-0.00015538	0.12091	6.3934E-05	528.7695517539369	18.767	0.26028	18.836	18.667	18.927	0.069159					6	4	2	0	0	0	0.69028	1	6382	6382		25.399	6.1423	1	2861700			23887	18	15054	15140	22972	22972					-0.0008033928738768736
PGKKKKRA	8	Unmodified	_PGKKKKRA_					0	0	0		ENSG00000090889|ENST00000374403|KIF4A;ENSG00000226650|ENST00000435029|KIF4B	ENSG00000090889|ENST00000374403|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	MSMS	HCT116MG_D190212_S2	2	456.8083190917969	2	456.808711	911.602869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.525	1	58.355	57.855	58.855	-0.1703								0	0	0	0.8837	1	22621	22621		0.69038	0.088878	1				23888	1547	15055	15141	22973	22973					0.1435318287916516
PGKKLGSRAG	10	Unmodified	_PGKKLGSRAG_					0	0	0		ENST00000532285.1_2_11:64949426-64949516:+|nuORF	ENST00000532285.1_2_11:64949426-64949516:+|nuORF	ENST00000532285.1_2_11:64949426-64949516:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	485.7518310546875	2	485.793258	969.571963	0.26237	0.00012746	-0.76735	-0.00037278	-0.50498	-0.00024532	485.79318277721785	25.388	0.20787	25.282	25.204	25.412	-0.10618					5	3	2	0	0	0	0.3029	1	9094	9094		3.5965	0	1	3044900			23889	8633	15056	15142	22974	22974					0.08595984774274257
PGKKSAVV	8	Unmodified	_PGKKSAVV_					0	0	0		SMG8|p.R828K|1|0.19|ENSG00000167447|chr17:59213306-59213306|G/A|missense_variant	SMG8|p.R828K|1|0.19|ENSG00000167447|chr17:59213306-59213306|G/A|missense_variant	SMG8|p.R828K|1|0.19|ENSG00000167447|chr17:59213306-59213306|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	393.2464599609375	2	393.247621	784.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.43	1	43.056	42.556	43.556	-0.37433								0	0	0	0.8837	1	15964	15964		2.3027	0	1				23890	18176	15057	15143	22975	22975					0.0798272107693947
PGKLAAAL	8	Unmodified	_PGKLAAAL_					0	0	0		SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant;ENSG00000188338|ENST00000614032|SLC38A3	SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant	SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	370.73553466796875	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.76	1	54.464	53.964	54.964	-0.29587								0	0	0	0.8837	1	20757	20757		2.5775	0	1				23891	5978	15058	15144	22976	22976					0.07907336048208435
PGKLALAA	8	Unmodified	_PGKLALAA_					0	0	0			REV__ENSG00000189306|ENST00000323013|RRP7A	REV__ENSG00000189306|ENST00000323013|RRP7A	MSMS	HCT116MG_D190212_S4	4	370.7354431152344	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.426	1	52.086	51.586	52.586	-0.34023								0	0	0	0.8837	1	19543	19543		0.69038	0	1		+		23892	13996	15059	15145	22977	22977					0.07907336048208435
PGKLALAA	8	Unmodified	_PGKLALAA_					0	0	0			REV__ENSG00000189306|ENST00000323013|RRP7A	REV__ENSG00000189306|ENST00000323013|RRP7A	MSMS	HCT116MG_D190212_S4	4	370.7352294921875	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.999	1	52.66	52.16	53.16	-0.33822								0	0	0	0.8837	1	19774	19774		0.69038	0	1		+		23893	13996	15059	15145	22978	22978					0.07907336048208435
PGKLALAA	8	Unmodified	_PGKLALAA_					0	0	0			REV__ENSG00000189306|ENST00000323013|RRP7A	REV__ENSG00000189306|ENST00000323013|RRP7A	MSMS	HCT116MG_D190212_S4	4	370.7350769042969	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.405	1	54.081	53.581	54.581	-0.32349								0	0	0	0.8837	1	20341	20341		0.69038	0	1		+		23894	13996	15059	15145	22979	22979					0.07907336048208435
PGKLALAA	8	Unmodified	_PGKLALAA_					0	0	0			REV__ENSG00000189306|ENST00000323013|RRP7A	REV__ENSG00000189306|ENST00000323013|RRP7A	MSMS	HCT116MG_D190212_S4	4	370.7351989746094	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.984	1	57.695	57.195	58.195	-0.28879								0	0	0	0.8837	1	21780	21780		0.69038	0	1		+		23895	13996	15059	15145	22980	22980					0.07907336048208435
PGKLALAA	8	Unmodified	_PGKLALAA_					0	0	0			REV__ENSG00000189306|ENST00000323013|RRP7A	REV__ENSG00000189306|ENST00000323013|RRP7A	MSMS	HCT116MG_D190212_S4	4	370.7350769042969	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.225	1	60.964	60.464	61.464	-0.2602								0	0	0	0.8837	1	23091	23091		0.69038	0	1		+		23896	13996	15059	15145	22981	22981					0.07907336048208435
PGKLRPWNRS	10	Unmodified	_PGKLRPWNRS_					0	0	0			REV__ENST00000563230.1_1_16:79123974-79135149:+|nuORF	REV__ENST00000563230.1_1_16:79123974-79135149:+|nuORF	MSMS	HCT116MG_D190212_S3	3	404.23291015625	3	404.231634	1209.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.113	1	44.804	44.304	45.304	-0.30927								0	0	0	0.96377	1	16882	16882		0.69767	0.24315	1		+		23897	16507	15060	15146	22982	22982					0.0766243647697138
PGKQRHRRKG	10	Unmodified	_PGKQRHRRKG_					0	0	0			REV__ENST00000442677.3_1_10:73474007-73474583:+|nuORF	REV__ENST00000442677.3_1_10:73474007-73474583:+|nuORF	MSMS	HCT116MG_D190212_S4	4	610.3643798828125	2	610.365779	1218.717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.2	1	33.814	33.314	34.314	-0.38558								0	0	0	0.95351	1	12478	12478		3.9444	0.66309	1		+		23898	15655	15061	15147	22983	22983					0.11639465693951934
PGKRHSIG	8	Unmodified	_PGKRHSIG_					0	0	0			REV__ENST00000540016.5_1_12:109994935-110011292:-|nuORF	REV__ENST00000540016.5_1_12:109994935-110011292:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	426.24591064453125	2	426.245944	850.477334	0.0061851	2.6364E-06	0.82764	0.00035278	0.83383	0.00035542	426.24623211540654	47.282	0.99082	47.282	46.751	47.742	0					51	19	4	0	0	0	0.83605	1	18090	18090		7.2892	2.5332	1	2378400000	+		23899	16359	15062	15148	22984	22984					0.0461147102294035
PGKRHSIG	8	Unmodified	_PGKRHSIG_					0	0	0			REV__ENST00000540016.5_1_12:109994935-110011292:-|nuORF	REV__ENST00000540016.5_1_12:109994935-110011292:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	426.245944	850.477334	0.40089	0.00017088	0.32264	0.00013753	0.72353	0.0003084	426.2459926731302	47.742	0.82351	47.609	47.119	47.943	-0.13281	0.16361	-5.3605E-05	NaN	7.2892	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571560000	+		23900	16359	15062	15148							0.0461147102294035
PGKRPGRG	8	Unmodified	_PGKRPGRG_					0	0	0			REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	412.7461242675781	2	412.746111	823.477669	-0.2073	-8.5562E-05	0.3445	0.00014219	0.1372	5.6628E-05	412.74611745620274	48.058	1.1737	48.058	47.543	48.717	0					29	22	2	0	0	0	0.8672	1	18265	18265		2.3027	0	1	52406000	+		23901	17052	15063	15149	22985	22985					0.05886890742806372
PGKRPGRG	8	Unmodified	_PGKRPGRG_					0	0	0			REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	412.746337890625	2	412.746111	823.477669	-0.18802	-7.7605E-05	0.47431	0.00019577	0.28629	0.00011816	412.7462313656082	50.101	0.41265	50.101	49.853	50.266	0					11	7	2	0	0	0	0.87635	1	19107	19107		0.69038	0	1	29402000	+		23902	17052	15063	15149	22986	22986					0.05886890742806372
PGKRPGRG	8	Unmodified	_PGKRPGRG_					0	0	0			REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	824.4856567382812	1	824.484945	823.477669	0.91764	0.00075658	0.14763	0.00012172	1.0653	0.0008783	824.4848919477374	47.034	1.2357	46.72	46.125	47.361	-0.31405					58	24	4	0	0	0	0.87635	1	17782	17782		0.69038	0	1	131500000	+		23903	17052	15063	15149	22987	22987					0.05886890742806372
PGKRPGRG	8	Unmodified	_PGKRPGRG_					0	0	0			REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	824.485595703125	1	824.484945	823.477669	0.96398	0.00079479	0.042649	3.5163E-05	1.0066	0.00082995	824.4848037094023	46.985	1.7767	46.615	46	47.777	-0.37038					91	48	4	0	0	0	0.87635	1	17470	17470		0.69038	0	1	226140000	+		23904	17052	15063	15149	22988	22988					0.05886890742806372
PGKRPGRG	8	Unmodified	_PGKRPGRG_					0	0	0			REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	412.746111	823.477669	-0.2073	-8.5562E-05	0.3445	0.00014219	0.1372	5.6628E-05	412.74611745620274	48.058	1.1737	48.058	47.543	48.717	0	0	0	NaN	2.3027	29	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52406000	+		23905	17052	15063	15149							0.05886890742806372
PGKSASKA	8	Unmodified	_PGKSASKA_					0	0	0			REV__ENSG00000160838|ENST00000337428|LRRC71	REV__ENSG00000160838|ENST00000337428|LRRC71	MULTI-MSMS	HCT116MG_D190212_S1	1	373.213134765625	2	373.213778	744.413003	-0.11059	-4.1276E-05	-1.3598	-0.0005075	-1.4704	-0.00054878	373.2131610821142	45.227	0.31176	45.227	45.087	45.399	0					11	5	3	0	0	0	0.86858	1	17152	17152		2.0598	0	1	17381000	+		23906	12846	15064	15150	22989	22989					0.030572711461331892
PGKSASKA	8	Unmodified	_PGKSASKA_					0	0	0			REV__ENSG00000160838|ENST00000337428|LRRC71	REV__ENSG00000160838|ENST00000337428|LRRC71	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	373.213778	744.413003	-0.11059	-4.1276E-05	-1.3598	-0.0005075	-1.4704	-0.00054878	373.2131610821142	45.227	0.31176	45.227	45.087	45.399	0	0	0	NaN	2.0598	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17381000	+		23907	12846	15064	15150							0.030572711461331892
PGKTHPTP	8	Unmodified	_PGKTHPTP_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MSMS	HCT116MG_D190212_S3	3	417.72705078125	2	417.727052	833.439552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.689	1	23.641	23.141	24.141	-0.047821								0	0	0	0.8837	1	8376	8376		7.9102	2.1497	1		+		23908	13151	15065	15151	22990	22990					0.016169600374723814
PGKTHPTP	8	Unmodified	_PGKTHPTP_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MSMS	HCT116MG_D190212_S4	4	417.7269287109375	2	417.727052	833.439552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.737	1	23.489	22.989	23.989	-0.24775								0	0	0	0.8837	1	8327	8327		7.9102	0.62092	1		+		23909	13151	15065	15151	22991	22991					0.016169600374723814
PGKVLVPLAAP	11	Unmodified	_PGKVLVPLAAP_					0	0	0		ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC;CIC|p.T1217Nfs*6|1|0.23|ENSG00000079432|chr19:42293133-42293134|-/A|frameshift_variant;CIC|p.P1248Hfs*54|3|0.34|ENSG00000079432|chr19:42293224-42293224|C/-|frameshift_variant;CIC|p.E1288Gfs*56|1|0.3|ENSG00000079432|chr19:42293654-42293655|-/G|frameshift_variant	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MSMS	HCT116MG_D190212_S4	4	531.2875366210938	2	531.33951	1060.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.439	1	49.077	48.577	49.577	-0.36213								0	0	0	0.95954	1	18338	18338		1.3295	0.63916	1				23910	1381	15066	15152	22992	22992					0.1365606978777123
PGLAANKP	8	Unmodified	_PGLAANKP_					0	0	0			REV__MYCN|p.R302C|1|0.21|ENSG00000134323|chr2:15945606-15945606|C/T|missense_variant	REV__MYCN|p.R302C|1|0.21|ENSG00000134323|chr2:15945606-15945606|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	384.22271728515625	2	384.224146	766.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.882	1	24.613	24.113	25.113	-0.26881								0	0	0	0.8837	1	8790	8790		5.7604	2.8712	1		+		23911	12051	15067	15153	22993	22993					0.04117861525787703
PGLAAQTPP	9	Unmodified	_PGLAAQTPP_					0	0	0		ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENST00000483783.1_1_9:140005102-140007040:-|nuORF	MSMS	HCT116MG_D190212_S4	4	426.71429443359375	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.91	1	22.672	22.172	23.172	-0.23758								0	0	0	0.53872	1	7995	7995		26.884	2.2098	1				23912	8278	15068	15154	22994	22994					0.023658268346594014
PGLAGGPRFEV	11	Unmodified	_PGLAGGPRFEV_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MSMS	HCT116MG_D190212_S3	3	550.2992553710938	2	550.298373	1098.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.584	1	19.644	19.144	20.144	0.05983								0	0	0	0.94416	1	6724	6724		9.3831	0.63772	1				23913	3191	15069	15155	22995	22995					0.03684547708826358
PGLASLGYYSY	11	Unmodified	_PGLASLGYYSY_					0	0	0			REV__ENSG00000164181|ENST00000508821|ELOVL7	REV__ENSG00000164181|ENST00000508821|ELOVL7	MSMS	HCT116MG_D190212_S3	3	595.7904663085938	2	595.790047	1189.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.4	1	23.36	22.86	23.86	-0.03968								0	0	0	0.91433	1	8260	8260		18.146	3.741	1		+		23914	12988	15070	15156	22996	22996					-0.021659979677679075
PGLCGFGCHT	10	Unmodified	_PGLCGFGCHT_					0	0	0			REV__ENST00000530791.5_1_11:65687732-65687783:+|nuORF	REV__ENST00000530791.5_1_11:65687732-65687783:+|nuORF	MSMS	HCT116MG_D190212_S3	3	496.2110290527344	2	496.209855	990.405157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.757	1	15.843	15.343	16.343	0.085423								0	0	0	0.95179	1	5180	5180		4.3292	0.73274	1		+		23915	16314	15071	15157	22997	22997					-0.09042947437296789
PGLEGGPR	8	Unmodified	_PGLEGGPR_					0	0	0		ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3	ENSG00000090565|ENST00000262305|RAB11FIP3	ENSG00000090565|ENST00000262305|RAB11FIP3	MSMS	HCT116MG_D190212_S3	3	391.28411865234375	2	391.711402	781.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.344	1	17.425	16.925	17.925	0.081358								0	0	0	0.68119	1	5820	5820		32.117	7.4431	1				23916	1544	15072	15158	22998	22998					0.008803870033716521
PGLEPEPGGAP	11	Unmodified	_PGLEPEPGGAP_					0	0	0		ENST00000606994.1_1_5:32174612-32175047:+|nuORF	ENST00000606994.1_1_5:32174612-32175047:+|nuORF	ENST00000606994.1_1_5:32174612-32175047:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	511.23284912109375	2	510.753464	1019.49238	0.2241	0.00011446	-1.3094	-0.00066877	-1.0853	-0.00055432	510.75362571565125	21.025	0.25934	20.815	20.656	20.915	-0.20959					6	4	2	0	0	0	0.32522	1	7187	7187		34.102	0	1	1736900			23917	9113	15073	15159	22999	22999					-0.016591266903787982
PGLEPHGF	8	Unmodified	_PGLEPHGF_					0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	MULTI-SECPEP	HCT116MG_D190212_S1	1	427.302734375	2	427.213778	852.413003	-0.051735	-2.2102E-05	-0.8234	-0.00035177	-0.87513	-0.00037387	427.2133610879257	43.291	0.31241	43.291	43.108	43.42	0					7	5	2	0	0	0	0.32917	1	16290	16290		2.8892	0	1	6318400			23918	4128	15074	15160	23000	23000					-0.01910728853852106
PGLEPWAGP	9	Unmodified	_PGLEPWAGP_					0	0	0		ENST00000471629.1_1_20:43353203-43355945:+|nuORF	ENST00000471629.1_1_20:43353203-43355945:+|nuORF	ENST00000471629.1_1_20:43353203-43355945:+|nuORF	MSMS	HCT116MG_D190212_S3	3	462.1466369628906	2	462.23471	922.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.282	1	26.132	25.632	26.632	-0.14924								0	0	0	0.7676	1	9421	9421		9.3474	0	1				23919	8160	15075	15161	23001	23001					-0.009461731653459537
PGLGEGRPP	9	Unmodified	_PGLGEGRPP_					0	0	0		ENST00000527527.1_1_11:67270169-67272698:-|nuORF;ENST00000527103.1_1_11:67271341-67272698:-|nuORF	ENST00000527527.1_1_11:67270169-67272698:-|nuORF	ENST00000527527.1_1_11:67270169-67272698:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	440.724609375	2	440.237784	878.461016	0.10875	4.7875E-05	-0.20459	-9.0069E-05	-0.095843	-4.2194E-05	440.2376485723542	20.866	0.99713	20.484	19.862	20.859	-0.38288					31	18	2	0	0	0	0.12994	1	7156	7156		52.268	3.9225	1	10473000			23920	8592	15076	15162	23002	23002					0.016923450661806783
PGLGGKGLP	9	Unmodified	_PGLGGKGLP_					0	0	0		ENSG00000092758|ENST00000649368|COL9A3;COL9A3|p.G124Efs*5|1|0.15|ENSG00000092758|chr20:62821525-62821525|C/-|frameshift_variant;COL9A3|p.P243Lfs*290|1|0.43|ENSG00000092758|chr20:62826243-62826243|C/-|frameshift_variant;COL9A3|p.P216Lfs*317|1|0.19|ENSG00000092758|chr20:62825828-62825828|C/-|frameshift_variant	ENSG00000092758|ENST00000649368|COL9A3	ENSG00000092758|ENST00000649368|COL9A3	MSMS	HCT116MG_D190212_S4	4	398.2383728027344	2	398.239796	794.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.638	1	29.289	28.789	29.789	-0.34921								0	0	0	0.7676	1	10711	10711		9.3474	2.0582	1				23921	1585	15077	15163	23003	23003					0.05958434559909165
PGLGIQQY	8	Unmodified	_PGLGIQQY_					0	0	0			REV__nc|ENSG00000145730|P19021-2|PAM	REV__nc|ENSG00000145730|P19021-2|PAM	MSMS	HCT116MG_D190212_S3	3	438.21435546875	2	438.23471	874.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.415	1	25.308	24.808	25.808	-0.10618								0	0	0	0.8837	1	9072	9072		15.768	3.2367	1		+		23922	12457	15078	15164	23004	23004					0.012618268346614059
PGLGLQHAA	9	Unmodified	_PGLGLQHAA_					0	0	0		ENST00000427323.5_1_3:38388271-38390057:+|nuORF	ENST00000427323.5_1_3:38388271-38390057:+|nuORF	ENST00000427323.5_1_3:38388271-38390057:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	432.74102783203125	2	432.240327	862.466101	0.086152	3.7238E-05	-0.20001	-8.6452E-05	-0.11386	-4.9214E-05	432.2402189064921	22.854	0.73017	22.617	22.185	22.916	-0.23758					17	13	2	0	0	0	0.30509	1	8014	8014		30.225	1.1432	1	1652100			23923	7821	15079	15165	23005	23005					0.029366489287895092
PGLHRLRRRR	10	Unmodified	_PGLHRLRRRR_					0	0	0			REV__ENST00000549384.5_1_12:109042624-109125250:-|nuORF	REV__ENST00000549384.5_1_12:109042624-109125250:-|nuORF	MSMS	HCT116MG_D190212_S4	4	658.9142456054688	2	658.91597	1315.81739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.028	1	46.657	46.157	47.157	-0.37038								0	0	0	0.96291	1	17382	17382		1.8442	0.36234	1		+		23924	16417	15080	15166	23006	23006					0.17211122747630725
PGLIVLTP	8	Unmodified	_PGLIVLTP_					0	0	0			REV__ENSG00000196865|ENST00000369301|NHLRC2	REV__ENSG00000196865|ENST00000369301|NHLRC2	MSMS	HCT116MG_D190212_S1	1	405.25927734375	2	405.260197	808.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.737	1	15.737	15.237	16.237	0								0	0	0	0.8837	1	5249	5249		2.8892	0	1		+		23925	14050	15081	15167	23007	23007					0.09392775879496185
PGLKDLSSHLP	11	Unmodified	_PGLKDLSSHLP_					0	0	0			REV__TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant	REV__TSC1|p.L910Wfs*21|1|0.36|ENSG00000165699|chr9:132897507-132897507|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	582.3250732421875	2	582.324588	1162.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.276	1	31.015	30.515	31.515	-0.26071								0	0	0	0.93552	1	11420	11420		13.906	1.3745	1		+		23926	13073	15082	15168	23008	23008					0.059810860518155096
PGLLLVRGP	9	Unmodified	_PGLLLVRGP_					0	0	0		ENST00000459850.5_1_9:139905636-139906175:-|nuORF;ENST00000341511.10_1_9:139905550-139906175:-|nuORF	ENST00000459850.5_1_9:139905636-139906175:-|nuORF	ENST00000459850.5_1_9:139905636-139906175:-|nuORF	MSMS	HCT116MG_D190212_S2	2	461.2969970703125	2	461.297645	920.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.249	1	20.866	20.366	21.366	-0.38288								0	0	0	0.76781	1	7468	7468		8.5933	2.8329	1				23927	7221	15083	15169	23009	23009					0.11726958410747557
PGLNSEQQP	9	Unmodified	_PGLNSEQQP_					0	0	0		ENSG00000128652|ENST00000683222|HOXD3	ENSG00000128652|ENST00000683222|HOXD3	ENSG00000128652|ENST00000683222|HOXD3	MULTI-MSMS	HCT116MG_D190212_S2	2	485.67572021484375	2	485.235439	968.456324	0.35617	0.00017283	0.033155	1.6088E-05	0.38933	0.00018891	485.235264464958	24.333	0.20852	23.953	23.822	24.03	-0.38003					5	3	2	0	0	0	0.45867	1	8664	8664		19.257	0	1	7968300			23928	3005	15084	15170	23010	23010					-0.02916583867238387
PGLPAGSGPL	10	Unmodified	_PGLPAGSGPL_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2;ENST00000443451.6_1_12:124809950-124819187:-|nuORF;nc|ENSG00000196498|Q9Y618-2|NCOR2;ENST00000418829.5_1_12:124809950-124810795:-|nuORF	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MSMS	HCT116MG_D190212_S4	4	433.24481201171875	2	433.242535	864.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.608	1	45.236	44.736	45.736	-0.37266								0	0	0	0.88269	1	16830	16830		18.135	0	1				23929	6077	15085	15171	23011	23011					0.03286113351691711
PGLPAMGGHGP	11	Unmodified	_PGLPAMGGHGP_					0	0	0		NOXA1|p.P291H|1|0.19|ENSG00000188747|chr9:137433226-137433226|C/A|missense_variant	NOXA1|p.P291H|1|0.19|ENSG00000188747|chr9:137433226-137433226|C/A|missense_variant	NOXA1|p.P291H|1|0.19|ENSG00000188747|chr9:137433226-137433226|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	495.73516845703125	2	495.744919	989.475285	0.38985	0.00019327	2.3408	0.0011604	2.7307	0.0013537	495.7462421843517	21.359	0.25993	21.14	21.01	21.27	-0.21832					8	4	2	0	0	0	0.71614	1	7324	7324		15.847	1.9411	1	5478400			23930	9702	15086	15172	23012	23012					-0.019873257771678254
PGLPPQAFP	9	Unmodified	_PGLPPQAFP_					0	0	0			REV__ENST00000568118.1_1_16:66995210-66997287:+|nuORF	REV__ENST00000568118.1_1_16:66995210-66997287:+|nuORF	MSMS	HCT116MG_D190212_S4	4	462.14666748046875	2	462.252903	922.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.145	1	25.854	25.354	26.354	-0.29022								0	0	0	0.76641	1	9300	9300		13.508	1.8676	1		+		23931	13405	15087	15173	23013	23013					0.02690703731366284
PGLQGSHGGKP	11	Unmodified	_PGLQGSHGGKP_					0	0	0			REV__ENSG00000145012|ENST00000617246|LPP	REV__ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	HCT116MG_D190212_S3	3	517.767822265625	2	517.772522	1033.53049	0.22624	0.00011714	0.52014	0.00026932	0.74639	0.00038646	517.7727524515533	15.71	0.52084	15.795	15.508	16.029	0.085423					25	9	4	0	0	0	0.61797	2	5107	5107;5203		33.445	7.1768	1	36669000	+		23932	12437	15088	15174	23014;23015	23014					0.01506804014957197
PGLQGSHGGKP	11	Unmodified	_PGLQGSHGGKP_					0	0	0			REV__ENSG00000145012|ENST00000617246|LPP	REV__ENSG00000145012|ENST00000617246|LPP	MULTI-SECPEP	HCT116MG_D190212_S3	3	517.27099609375	2	517.772522	1033.53049	0.22624	0.00011714	0.52014	0.00026932	0.74639	0.00038646	517.7727524515533	15.71	0.52084	15.795	15.508	16.029	0.085423					25	9	4	0	0	0	0.33243	1	5124	5124		33.445	11.908	1	36669000	+		23933	12437	15088	15174	23016	23016					0.01506804014957197
PGLQLKVP	8	Unmodified	_PGLQLKVP_					0	0	0		ENST00000469769.1_1_1:155167034-155167397:-|nuORF	ENST00000469769.1_1_1:155167034-155167397:-|nuORF	ENST00000469769.1_1_1:155167034-155167397:-|nuORF	MSMS	HCT116MG_D190212_S3	3	426.2697448730469	2	426.271096	850.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.383	1	28.177	27.677	28.677	-0.20593								0	0	0	0.8837	1	10269	10269		11.114	0	1				23934	8141	15089	15175	23017	23017					0.09639580628083877
PGLQPDDEH	9	Unmodified	_PGLQPDDEH_					0	0	0			REV__ENST00000496389.5_1_3:112738423-112780791:+|nuORF	REV__ENST00000496389.5_1_3:112738423-112780791:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	504.2253723144531	2	504.225071	1006.43559	0.25629	0.00012923	0.064514	3.253E-05	0.32081	0.00016176	504.2250944273812	16.594	2.1334	16.679	15.404	17.538	0.085424					65	40	2	0	0	0	0.35128	2	5696	5190;5696		25.399	14.838	1	3548900	+		23935	16090	15090	15176	23018;23019	23019					-0.06737174246904942
PGLQRGEAQ	9	Unmodified	_PGLQRGEAQ_					0	0	0			REV__ENST00000524394.2_1_8:145946383-145979703:-|nuORF	REV__ENST00000524394.2_1_8:145946383-145979703:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	478.2510681152344	2	478.251423	954.488293	0.45675	0.00021844	0.78293	0.00037444	1.2397	0.00059288	478.2515966630928	21.878	0.46708	21.659	21.322	21.789	-0.21832					13	8	2	0	0	0	0.30117	1	7533	7533		30.637	5.6456	1	3115600	+		23936	14112	15091	15177	23020	23020					0.009228286065649627
PGLQRGEAQ	9	Unmodified	_PGLQRGEAQ_					0	0	0			REV__ENST00000524394.2_1_8:145946383-145979703:-|nuORF	REV__ENST00000524394.2_1_8:145946383-145979703:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	478.251423	954.488293	0.45675	0.00021844	0.78293	0.00037444	1.2397	0.00059288	478.2515966630928	21.878	0.46708	21.659	21.322	21.789	-0.21832	0.032472	-0.00024419	NaN	30.637	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3115600	+		23937	14112	15091	15177							0.009228286065649627
PGLRALLRTQF	11	Unmodified	_PGLRALLRTQF_					0	0	0			REV__ENST00000396908.8_2_19:36259471-36259852:+|nuORF	REV__ENST00000396908.8_2_19:36259471-36259852:+|nuORF	MSMS	HCT116MG_D190212_S3	3	636.3803100585938	2	636.382771	1270.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.656	1	38.355	37.855	38.855	-0.30137								0	0	0	0.94284	1	14327	14327		10.074	3.3508	1		+		23938	15361	15092	15178	23021	23021					0.1264444934236053
PGLRGVVQPG	10	Unmodified	_PGLRGVVQPG_					0	0	0			REV__ENST00000473413.1_1_9:117350118-117350310:+|nuORF	REV__ENST00000473413.1_1_9:117350118-117350310:+|nuORF	MSMS	HCT116MG_D190212_S4	4	490.28631591796875	2	490.287808	978.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.192	1	25.902	25.402	26.402	-0.29022								0	0	0	0.91906	1	9319	9319		11.64	4.3511	1		+		23939	15888	15093	15179	23022	23022					0.07092582399991443
PGLRQRVRRGR	11	Unmodified	_PGLRQRVRRGR_					0	0	0		ENSG00000169926|ENST00000307145|KLF13	ENSG00000169926|ENST00000307145|KLF13	ENSG00000169926|ENST00000307145|KLF13	MSMS	HCT116MG_D190212_S3	3	675.9212646484375	2	675.91871	1349.82287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.115	1	21.15	20.65	21.65	0.034473								0	0	0	0.95925	1	7342	7342		1.4819	0.15237	1				23940	5104	15094	15180	23023	23023					0.16194801539450054
PGLSAEIE	8	Unmodified	_PGLSAEIE_					0	0	0		nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	MSMS	HCT116MG_D190212_S3	3	408.21270751953125	2	408.210901	814.407249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.547	1	31.276	30.776	31.776	-0.27028								0	0	0	0.8837	1	11529	11529		12.532	3.9383	1				23941	4357	15095	15181	23024	23024					-0.007378721561963175
PGLSGELEMF	10	Unmodified	_PGLSGELEMF_					0	0	0		ENST00000527603.5_1_11:44088110-44094899:+|nuORF;ENST00000526577.5_1_11:44088110-44095068:+|nuORF	ENST00000527603.5_1_11:44088110-44094899:+|nuORF	ENST00000527603.5_1_11:44088110-44094899:+|nuORF	MSMS	HCT116MG_D190212_S4	4	540.2552490234375	2	540.257525	1078.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.714	1	25.424	24.924	25.924	-0.29022								0	0	0	0.92272	1	9126	9126		10.824	0.75	1				23942	8591	15096	15182	23025	23025					-0.03561315765273321
PGLSSSLRF	9	Unmodified	_PGLSSSLRF_					0	0	0		ENST00000398965.5_2_4:128886563-128886623:+|nuORF	ENST00000398965.5_2_4:128886563-128886623:+|nuORF	ENST00000398965.5_2_4:128886563-128886623:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	482.2673645019531	2	482.266542	962.51853	0.32945	0.00015888	-0.053827	-2.5959E-05	0.27562	0.00013292	482.2664088898323	36.33	0.65751	35.944	35.673	36.331	-0.38558					22	12	4	0	0	0	0.47829	1	13360	13360		18.135	0	1	25155000			23943	7688	15097	15183	23026	23026					0.03577187271753246
PGLTALRPPQ	10	Unmodified	_PGLTALRPPQ_					0	0	0			REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	525.3104858398438	2	525.308741	1048.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.005	1	32.623	32.123	33.123	-0.38223								0	0	0	0.90023	1	12044	12044		15.847	4.2069	1		+		23944	14306	15098	15184	23027	23027					0.08057138088497595
PGLTLLRP	8	Unmodified	_PGLTLLRP_					0	0	0			REV__ENST00000360864.8_1_20:62565605-62565743:+|nuORF	REV__ENST00000360864.8_1_20:62565605-62565743:+|nuORF	MSMS	HCT116MG_D190212_S2	2	433.774658203125	2	433.776545	865.538538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.467	1	15.14	14.64	15.64	-0.32684								0	0	0	0.8837	1	5141	5141		2.8892	0	1		+		23945	15087	15099	15185	23028	23028					0.10038983002357327
PGLTVHRVSRS	11	Unmodified	_PGLTVHRVSRS_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	HCT116MG_D190212_S1	1	604.8461303710938	2	604.846553	1207.67855	0.29227	0.00017678	-0.64771	-0.00039177	-0.35545	-0.00021499	604.8461779905333	50.654	1.1869	50.654	50.162	51.349	0					51	22	3	0	0	0	0.72792	1	19462	19462		11.495	4.393	1	33659000	+		23946	13711	15100	15186	23029	23029					0.08302115268793386
PGLVDSNPAPP	11	Unmodified	_PGLVDSNPAPP_					0	0	0		ENSG00000138495|ENST00000261070|COX17	ENSG00000138495|ENST00000261070|COX17	ENSG00000138495|ENST00000261070|COX17	MSMS	HCT116MG_D190212_S4	4	532.2762451171875	2	532.274564	1062.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.63	1	21.412	20.912	21.912	-0.21832								0	0	0	0.92235	1	7478	7478		17.113	2.2746	1				23947	3564	15101	15187	23030	23030					0.0058084871798200766
PGLVLRRL	8	Unmodified	_PGLVLRRL_					0	0	0			REV__ENSG00000258429|ENST00000288022|PDF	REV__ENSG00000258429|ENST00000288022|PDF	MULTI-SECPEP	HCT116MG_D190212_S2	2	462.1463928222656	2	462.311087	922.60762	0.28286	0.00013077	-0.098833	-4.5692E-05	0.18403	8.5079E-05	462.3109563561914	41.81	0.20774	41.742	41.601	41.808	-0.068199					5	3	2	0	0	0	0.32917	1	15834	15834		6.3541	0	1	5742600	+		23948	14407	15102	15188	23031	23031					0.14322067021930707
PGLVVCRPSLP	11	Unmodified	_PGLVVCRPSLP_					0	0	0		ENST00000481801.5_1_2:134877633-135011843:+|nuORF;ENST00000468758.1_1_2:134877558-135010718:+|nuORF	ENST00000481801.5_1_2:134877633-135011843:+|nuORF	ENST00000481801.5_1_2:134877633-135011843:+|nuORF	MSMS	HCT116MG_D190212_S3	3	569.3250122070312	2	569.326076	1136.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.675	1	38.374	37.874	38.874	-0.30137								0	0	0	0.94416	1	14335	14335		9.3831	0.63772	1				23949	8132	15103	15189	23032	23032					0.07474637904965675
PGLYCSGWVK	10	Unmodified	_PGLYCSGWVK_					0	0	0		ENST00000579482.5_1_17:72858941-72860228:-|nuORF;nc|ENSG00000161513|P22570-4|FDXR;nc|ENSG00000161513|P22570-6|FDXR;nc|ENSG00000161513|P22570-5|FDXR;ENST00000577509.5_1_17:72858941-72868963:-|nuORF;nc|ENSG00000161513|P22570|FDXR;ENSG00000161513|ENST00000293195|FDXR;nc|ENSG00000161513|P22570-2|FDXR;nc|ENSG00000161513|P22570-7|FDXR;nc|ENSG00000161513|P22570-3|FDXR	ENST00000579482.5_1_17:72858941-72860228:-|nuORF	ENST00000579482.5_1_17:72858941-72860228:-|nuORF	MSMS	HCT116MG_D190212_S3	3	555.2776489257812	2	555.276052	1108.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.599	1	27.411	26.911	27.911	-0.18847								0	0	0	0.82636	1	9953	9953		25.399	4.9457	1				23950	4487	15104	15190	23033	23033					-0.012375994288504444
PGMKMINQFQE	11	Unmodified	_PGMKMINQFQE_					0	0	0			REV__ENST00000556445.1_1_14:35487839-35488318:+|nuORF	REV__ENST00000556445.1_1_14:35487839-35488318:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	662.3169555664062	2	661.815215	1321.61588	0.68489	0.00045327	-0.60935	-0.00040328	0.075543	4.9995E-05	661.8148884714407	27.693	0.8735	27.371	26.732	27.606	-0.32157					35	16	4	0	0	0	0.36308	1	9694	9694		11.495	4.393	1	5736400	+		23951	11106	15105	15191	23034	23034					-0.03206534905916669
PGMMRQPQGP	10	Unmodified	_PGMMRQPQGP_					0	0	0			REV__nc|ENSG00000118482|Q92576-2|PHF3	REV__nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	HCT116MG_D190212_S4	4	550.2175903320312	2	549.762786	1097.51102	0.060684	3.3362E-05	0.04102	2.2551E-05	0.1017	5.5913E-05	549.7626920159502	16.873	0.46738	16.706	16.4	16.867	-0.16664					15	8	2	0	0	0	0.81435	1	5508	5508		10.824	0	1	2144800	+		23952	11635	15106	15192	23035	23035					-0.03383611591834779
PGMPGVDG	8	Unmodified	_PGMPGVDG_					0	0	0			REV__nc|ENSG00000204248|P13942-8|COL11A2;REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	365.1646423339844	2	365.165439	728.316325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.567	1	58.567	58.067	59.067	0								0	0	0	0.8837	1	22565	22565		0.79363	0	1		+		23953	14187;10221	15107	15193	23036	23036					-0.058700394053062155
PGMQSEFVPQ	10	Unmodified	_PGMQSEFVPQ_					0	0	0		SGSM1|p.L535Pfs*6|1|0.09|ENSG00000167037|chr22:24879465-24879466|-/C|frameshift_variant;ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	SGSM1|p.L535Pfs*6|1|0.09|ENSG00000167037|chr22:24879465-24879466|-/C|frameshift_variant	SGSM1|p.L535Pfs*6|1|0.09|ENSG00000167037|chr22:24879465-24879466|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	560.2616577148438	2	560.260599	1118.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.824	1	16.658	16.158	17.158	-0.16664								0	0	0	0.94107	1	5536	5536		6.7232	0	1				23954	4900	15108	15194	23037	23037					-0.04786797533756726
PGNAQVHG	8	Unmodified	_PGNAQVHG_					0	0	0		nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	MULTI-MSMS	HCT116MG_D190212_S2	2	390.19329833984375	2	390.193377	778.372201	0.083211	3.2469E-05	-0.045103	-1.7599E-05	0.038109	1.487E-05	390.19321556018326	17.629	0.52224	17.273	17.075	17.597	-0.35647					13	9	2	0	0	0	0.64761	1	6012	6012		28.173	1.832	1	6980700			23955	9382	15109	15195	23038	23038					-0.02585070173472559
PGNAQVHG	8	Unmodified	_PGNAQVHG_					0	0	0		nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	MULTI-MSMS	HCT116MG_D190212_S2	2	779.380126953125	1	779.379477	778.372201	0.94021	0.00073278	-0.13097	-0.00010207	0.80924	0.0006307	779.3793023073002	17.614	0.41768	17.258	17.075	17.493	-0.35647					11	7	2	0	0	0	0.5791	1	6017	6017		34.187	7.3037	1	7206000			23956	9382	15109	15195	23039	23039					-0.02585070173472559
PGNAQVHG	8	Unmodified	_PGNAQVHG_					0	0	0		nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	MULTI-MSMS	HCT116MG_D190212_S3	3	390.1932373046875	2	390.193377	778.372201	-0.2822	-0.00011011	0.16124	6.2916E-05	-0.12096	-4.7196E-05	390.1933471050578	17.166	0.62429	17.251	16.964	17.589	0.084467					16	11	2	0	0	0	0.5791	1	5734	5734		34.187	7.8461	1	8739400			23957	9382	15109	15195	23040	23040					-0.02585070173472559
PGNAQVHG	8	Unmodified	_PGNAQVHG_					0	0	0		nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	MULTI-MSMS	HCT116MG_D190212_S3	3	779.38037109375	1	779.379477	778.372201	0.42138	0.00032842	0.17686	0.00013784	0.59824	0.00046626	779.3796808932245	17.169	0.57226	17.253	17.016	17.589	0.084467					18	10	3	0	0	0	0.5791	1	5738	5738		34.187	7.8461	1	8570300			23958	9382	15109	15195	23041	23041					-0.02585070173472559
PGNAQVHG	8	Unmodified	_PGNAQVHG_					0	0	0		nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	MULTI-MSMS	HCT116MG_D190212_S4	4	390.1935119628906	2	390.193377	778.372201	-0.29908	-0.0001167	0.22864	8.9214E-05	-0.070438	-2.7484E-05	390.193370425681	17.317	0.7247	17.147	16.863	17.588	-0.17047					19	13	2	0	0	0	0.64761	1	5702	5702		28.173	1.832	1	5324500			23959	9382	15109	15195	23042	23042					-0.02585070173472559
PGNAQVHG	8	Unmodified	_PGNAQVHG_					0	0	0		nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	nc|ENSG00000078808|Q9BRK5-3|SDF4	MULTI-MSMS	HCT116MG_D190212_S4	4	779.3798217773438	1	779.379477	778.372201	0.5122	0.0003992	-0.22646	-0.00017649	0.28575	0.00022271	779.3793845578056	17.328	0.67273	17.157	16.915	17.588	-0.17047					16	12	2	0	0	0	0.71835	1	5719	5719		20.871	1.4322	1	3355600			23960	9382	15109	15195	23043	23043					-0.02585070173472559
PGNESGPQPGS	11	Unmodified	_PGNESGPQPGS_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-MSMS	HCT116MG_D190212_S4	4	513.727783203125	2	513.727978	1025.4414	-0.40301	-0.00020704	0.34482	0.00017714	-0.058197	-2.9897E-05	513.7283165337607	15.701	0.84952	15.539	15.172	16.022	-0.16173					18	16	2	0	0	0	0.70662	1	5106	5106		19.362	6.3195	1	1167200	+		23961	12244	15110	15196	23044	23044					-0.07030075735224273
PGNKKMVAV	9	Unmodified	_PGNKKMVAV_					0	0	0		ENSG00000106479|ENST00000223210|ZNF862	ENSG00000106479|ENST00000223210|ZNF862	ENSG00000106479|ENST00000223210|ZNF862	MSMS	HCT116MG_D190212_S3	3	472.2754211425781	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.644	1	31.373	30.873	31.873	-0.27028								0	0	0	0.76781	1	11568	11568		8.5933	1.8701	1				23962	2082	15111	15197	23045	23045					0.05850721779347623
PGNKKMVAV	9	Unmodified	_PGNKKMVAV_					0	0	0		ENSG00000106479|ENST00000223210|ZNF862	ENSG00000106479|ENST00000223210|ZNF862	ENSG00000106479|ENST00000223210|ZNF862	MSMS	HCT116MG_D190212_S4	4	472.2752990722656	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.68	1	31.31	30.81	31.81	-0.3703								0	0	0	0.76781	1	11508	11508		8.5933	0	1				23963	2082	15111	15197	23046	23046					0.05850721779347623
PGNQEKAH	8	Unmodified	_PGNQEKAH_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MSMS	HCT116MG_D190212_S2	2	440.7171936035156	2	440.717216	879.419879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.331	1	15.989	15.489	16.489	-0.34183								0	0	0	0.8837	1	5488	5488		12.532	0	1				23964	4585	15112	15198	23047	23047					-0.02465415973290419
PGNQPASEPP	10	Unmodified	_PGNQPASEPP_					0	0	0			REV__IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	REV__IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	497.23590087890625	2	497.235439	992.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.839	1	24.57	24.07	25.07	-0.26881								0	0	0	0.86471	1	8773	8773		20.454	2.3073	1		+		23965	11662	15113	15199	23048	23048					-0.040205838672363825
PGNSRWSGY	9	Unmodified	_PGNSRWSGY_					0	0	0		ENST00000251691.4_1_6:138483291-138531090:+|nuORF	ENST00000251691.4_1_6:138483291-138531090:+|nuORF	ENST00000251691.4_1_6:138483291-138531090:+|nuORF	MSMS	HCT116MG_D190212_S4	4	512.2371215820312	2	512.235773	1022.45699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.27	1	33.885	33.385	34.385	-0.38558								0	0	0	0.76694	1	12507	12507		11.64	0.81637	1				23966	6800	15114	15200	23049	23049					-0.05333744427514375
PGPAAQKV	8	Unmodified	_PGPAAQKV_					0	0	0		ENST00000589498.5_1_18:14101024-14101273:-|nuORF	ENST00000589498.5_1_18:14101024-14101273:-|nuORF	ENST00000589498.5_1_18:14101024-14101273:-|nuORF	MSMS	HCT116MG_D190212_S3	3	384.2225646972656	2	384.224146	766.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.634	1	28.428	27.928	28.928	-0.20593								0	0	0	0.8837	1	10370	10370		2.8892	0	1				23967	9024	15115	15201	23050	23050					0.041178615257990714
PGPAKYLR	8	Unmodified	_PGPAKYLR_					0	0	0		ENSG00000182950|ENST00000332145|ODF3L1	ENSG00000182950|ENST00000332145|ODF3L1	ENSG00000182950|ENST00000332145|ODF3L1	MSMS	HCT116MG_D190212_S3	3	451.2665100097656	2	451.266345	900.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.131	1	31.852	31.352	32.352	-0.27841								0	0	0	0.8837	1	11765	11765		12.532	2.3482	1				23968	5695	15116	15202	23051	23051					0.06389812342558798
PGPAQPGPR	9	Unmodified	_PGPAQPGPR_					0	0	0		nc|ENSG00000141858|Q6SPF0|SAMD1	nc|ENSG00000141858|Q6SPF0|SAMD1	nc|ENSG00000141858|Q6SPF0|SAMD1	MULTI-MSMS	HCT116MG_D190212_S3	3	438.7381286621094	2	438.737951	875.46135	0.13745	6.0305E-05	-0.026114	-1.1457E-05	0.11134	4.8848E-05	438.7379008864368	18.244	0.57289	18.321	18.101	18.674	0.076334					20	10	3	0	0	0	0.0054498	1	6174	6174		133.7	5.3366	1	9006800			23969	9481	15117	15203	23052	23052					0.01863764786048705
PGPAQPGPR	9	Unmodified	_PGPAQPGPR_					0	0	0		nc|ENSG00000141858|Q6SPF0|SAMD1	nc|ENSG00000141858|Q6SPF0|SAMD1	nc|ENSG00000141858|Q6SPF0|SAMD1	MULTI-MSMS	HCT116MG_D190212_S4	4	438.7378234863281	2	438.737951	875.46135	0.15823	6.9423E-05	-0.026698	-1.1713E-05	0.13153	5.7709E-05	438.73783181314093	18.562	0.57065	18.381	18.097	18.667	-0.18052					16	10	2	0	0	0	0.007119	1	6218	6218		120.45	4.7584	1	8091000			23970	9481	15117	15203	23053	23053					0.01863764786048705
PGPARAHRP	9	Unmodified	_PGPARAHRP_					0	0	0			REV__ENST00000592937.1_1_19:2476862-2477408:+|nuORF	REV__ENST00000592937.1_1_19:2476862-2477408:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	479.7737121582031	2	479.770117	957.525681	0.25993	0.0001247	-0.79276	-0.00038034	-0.53284	-0.00025564	479.769663541188	33.516	0.20749	33.226	33.096	33.304	-0.29013					6	3	2	0	0	0	0.57626	1	12255	12255		12.532	0	1	13246000	+		23971	16702	15118	15204	23054	23054					0.045219646628424925
PGPDGPSGPPG	11	Unmodified	_PGPDGPSGPPG_					0	0	0		ENSG00000049089|ENST00000372748|COL9A2;ENST00000482722.5_1_1:40766856-40777859:-|nuORF;COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	ENSG00000049089|ENST00000372748|COL9A2	ENSG00000049089|ENST00000372748|COL9A2	MULTI-MSMS	HCT116MG_D190212_S4	4	467.71588134765625	2	467.716882	933.41921	-0.00081171	-3.7965E-07	-0.672	-0.00031431	-0.67282	-0.00031469	467.7164618564748	20.009	0.76988	19.816	19.33	20.1	-0.19368					26	14	2	0	0	0	0.19745	1	6806	6806		75.761	15.687	1	5095000			23972	1038	15119	15205	23055	23055					-0.05016255412999726
PGPDGQPGTP	10	Unmodified	_PGPDGQPGTP_					0	0	0		C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant;ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	462.1466979980469	2	461.716882	921.41921	0.35337	0.00016315	-0.62551	-0.00028881	-0.27214	-0.00012565	461.71679125279303	24.503	0.41633	24.419	24.185	24.601	-0.083694					11	7	2	0	0	0	0.68372	1	8726	8726		21.747	10.106	1	3003600			23973	290	15120	15206	23056	23056					-0.04464255412995044
PGPDGQPGTP	10	Unmodified	_PGPDGQPGTP_					0	0	0		C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant;ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	922.426513671875	1	922.426487	921.41921	0.92582	0.000854	-0.15053	-0.00013886	0.77529	0.00071514	922.4261879074635	25.023	0.62506	24.917	24.579	25.204	-0.10618					17	11	2	0	0	0	0.21913	1	8892	8892		57.722	9.9733	1	6174100			23974	290	15120	15206	23057	23057					-0.04464255412995044
PGPDGQPGTP	10	Unmodified	_PGPDGQPGTP_					0	0	0		C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant;ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	461.56927490234375	2	461.716882	921.41921	0.48523	0.00022404	-0.26554	-0.0001226	0.21969	0.00010144	461.71667799905214	25.004	0.67706	24.898	24.579	25.256	-0.10618					21	12	2	0	0	0	0.16489	1	8972	8972		62.573	18.714	1	3573300			23975	290	15120	15206	23058	23058					-0.04464255412995044
PGPDGQPGTP	10	Unmodified	_PGPDGQPGTP_					0	0	0		C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant;ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	461.7164306640625	2	461.716882	921.41921	0.24264	0.00011203	-0.14477	-6.6843E-05	0.097873	4.5189E-05	461.71691123833483	24.438	0.36312	24.169	23.978	24.341	-0.26881					10	6	2	0	0	0	0.34998	1	8636	8636		46.021	21.347	1	2323400			23976	290	15120	15206	23059	23059					-0.04464255412995044
PGPDGQPGTP	10	Unmodified	_PGPDGQPGTP_					0	0	0		C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant;ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	922.42724609375	1	922.426487	921.41921	0.9221	0.00085057	-0.096343	-8.887E-05	0.82576	0.0007617	922.4263257026613	24.982	0.77948	24.706	24.334	25.114	-0.27598					20	14	2	0	0	0	0.21913	1	8802	8802		57.722	17.772	1	4498300			23977	290	15120	15206	23060	23060					-0.04464255412995044
PGPDGQPGTP	10	Unmodified	_PGPDGQPGTP_					0	0	0		C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant;ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	C1QB|p.G166Rfs*34|1|0.35|ENSG00000173369|chr1:22661116-22661117|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	461.71636962890625	2	461.716882	921.41921	0.23427	0.00010817	-0.22016	-0.00010165	0.01411	6.5148E-06	461.71671958359866	24.929	0.77948	24.66	24.341	25.121	-0.26881					24	14	2	0	0	0	0.16489	2	8864	8839;8864		62.573	18.714	1	4962200			23978	290	15120	15206	23061;23062	23062					-0.04464255412995044
PGPEGAGPA	9	Unmodified	_PGPEGAGPA_					0	0	0		ENSG00000129911|ENST00000250916|KLF16	ENSG00000129911|ENST00000250916|KLF16	ENSG00000129911|ENST00000250916|KLF16	MULTI-MSMS	HCT116MG_D190212_S3	3	752.3577270507812	1	752.357345	751.350068	0.48553	0.00036529	0.10034	7.5493E-05	0.58587	0.00044079	752.3573903157481	19.352	1.4576	19.412	18.501	19.959	0.05983					43	27	2	0	0	0	0.058138	1	6613	6613		70.716	9.3581	1	9174800			23979	3047	15121	15207	23063	23063					-0.03555294641898854
PGPEGAGPA	9	Unmodified	_PGPEGAGPA_					0	0	0		ENSG00000129911|ENST00000250916|KLF16	ENSG00000129911|ENST00000250916|KLF16	ENSG00000129911|ENST00000250916|KLF16	MULTI-MSMS	HCT116MG_D190212_S4	4	753.3541870117188	1	752.357345	751.350068	0.82916	0.00062382	-0.1133	-8.5241E-05	0.71586	0.00053858	752.3571638762083	19.498	1.3939	19.311	18.453	19.847	-0.18674					36	26	2	0	0	0	0.10839	1	6509	6509		56.541	14.702	1	6632700			23980	3047	15121	15207	23064	23064					-0.03555294641898854
PGPEHRPRPQP	11	Unmodified	_PGPEHRPRPQP_					0	0	0			REV__ENST00000391860.6_3_1:230486830-230492856:-|nuORF	REV__ENST00000391860.6_3_1:230486830-230492856:-|nuORF	MSMS	HCT116MG_D190212_S4	4	423.22564697265625	3	423.226661	1266.65815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.988	1	17.813	17.313	18.313	-0.17501								0	0	0	0.94864	1	6007	6007		7.0371	2.6309	1		+		23981	15302	15122	15208	23065	23065					0.03548944608974125
PGPERVEPP	9	Unmodified	_PGPERVEPP_					0	0	0			REV__ENSG00000205085|ENST00000682356|GARIN1A	REV__ENSG00000205085|ENST00000682356|GARIN1A	MSMS	HCT116MG_D190212_S4	4	489.25555419921875	2	489.256174	976.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.79	1	30.426	29.926	30.926	-0.36416								0	0	0	0.76641	1	11148	11148		13.508	0.97634	1		+		23982	14215	15123	15209	23066	23066					0.00860596892096055
PGPFPAAP	8	Unmodified	_PGPFPAAP_					0	0	0		ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	MULTI-MSMS	HCT116MG_D190212_S2	2	377.2001037597656	2	377.200139	752.385725	-0.26739	-0.00010086	0.28797	0.00010862	0.020578	7.7619E-06	377.20019765624704	37.143	0.36113	37.037	36.868	37.23	-0.10584					12	6	3	0	0	0	0.84415	1	13921	13921		6.3541	0	1	31847000			23983	4366	15124	15210	23067	23067					-0.00037212394249763747
PGPGCCPR	8	Unmodified	_PGPGCCPR_					0	0	0			REV__nc|ENSG00000214357|A8MQ27-3|NEURL1B	REV__nc|ENSG00000214357|A8MQ27-3|NEURL1B	MULTI-MSMS	HCT116MG_D190212_S4	4	786.3408813476562	1	786.33854	785.331264	0.87892	0.00069113	1.0341	0.00081315	1.913	0.0015043	786.3394365569894	19.741	0.56207	19.547	19.278	19.84	-0.19367					14	10	2	0	0	0	0.81821	1	6711	6711		9.3474	0	1	2140200	+		23984	14266	15125	15211	23068	23068					-0.06998870808956781
PGPGSSPSPGP	11	Unmodified	_PGPGSSPSPGP_					0	0	0		ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	MULTI-MSMS	HCT116MG_D190212_S3	3	468.7245788574219	2	468.724707	935.43486	0.24653	0.00011555	-0.64097	-0.00030044	-0.39444	-0.00018488	468.7244528877626	21.792	0.52326	21.798	21.576	22.099	0.0057106					13	9	2	0	0	0	0.70691	1	7640	7640		19.257	4.4187	1	3876200			23985	5097	15126	15212	23069	23069					-0.03543968895939997
PGPGVLQP	8	Unmodified	_PGPGVLQP_					0	0	0		ENST00000207549.8_1_17:73830595-73831088:-|nuORF	ENST00000207549.8_1_17:73830595-73831088:-|nuORF	ENST00000207549.8_1_17:73830595-73831088:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	767.4292602539062	1	764.430116	763.422839	0.52111	0.00039835	-0.89455	-0.00068382	-0.37344	-0.00028547	764.4301030277277	38.988	0.36363	38.686	38.508	38.872	-0.30137					22	6	5	0	0	0	0.5791	1	14471	14471		34.187	0	1	38594000			23986	6728	15127	15213	23070	23070					0.03166459151509571
PGPHWPCP	8	Unmodified	_PGPHWPCP_					0	0	0			REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	445.702392578125	2	445.702523	889.390493	-0.1983	-8.8383E-05	0.9049	0.00040331	0.70659	0.00031493	445.702851159258	17.491	0.36411	17.572	17.273	17.638	0.081356					8	6	2	0	0	0	0.86388	1	5867	5867		2.8892	0	1	2012300	+		23987	15274	15128	15214	23071	23071					-0.05862651523136719
PGPHWPCP	8	Unmodified	_PGPHWPCP_					0	0	0			REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	445.702523	889.390493	-0.1983	-8.8383E-05	0.9049	0.00040331	0.70659	0.00031493	445.702851159258	17.491	0.36411	17.572	17.273	17.638	0.081356	0.056925	0.00039881	NaN	2.8892	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2012300	+		23988	15274	15128	15214							-0.05862651523136719
PGPHWPCP	8	Unmodified	_PGPHWPCP_					0	0	0			REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	445.702523	889.390493	0.00069063	3.0782E-07	0.35138	0.00015661	0.35207	0.00015692	445.70262516796254	17.629	0.62331	17.458	17.173	17.796	-0.17047	-0.056925	-9.4595E-05	NaN	2.8892	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5719900	+		23989	15274	15128	15214							-0.05862651523136719
PGPIPGPNPGS	11	Unmodified	_PGPIPGPNPGS_					0	0	0			REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1	REV__nc|ENSG00000178928|Q8N7U7-2|TPRX1	MSMS	HCT116MG_D190212_S4	4	495.3902893066406	2	495.256174	988.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.926	1	23.668	23.168	24.168	-0.25816								0	0	0	0.93374	1	8403	8403		14.838	1.7958	1		+		23990	13615	15129	15215	23072	23072					0.0030859689210274155
PGPIVFCH	8	Unmodified	_PGPIVFCH_					0	0	0			REV__ENST00000301887.8_1_11:64756061-64756229:-|nuORF	REV__ENST00000301887.8_1_11:64756061-64756229:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	434.8833312988281	2	435.220549	868.426544	-0.10282	-4.4749E-05	-1.9207	-0.00083593	-2.0235	-0.00088068	435.2179955976651	15.216	0.20859	14.889	14.758	14.967	-0.32684					5	3	2	0	0	0	0.32196	1	5070	5070		6.3541	1.5981	1	976380	+		23991	14792	15130	15216	23073	23073					-0.012931943462717754
PGPLADTEP	9	Unmodified	_PGPLADTEP_					0	0	0			REV__ENST00000566665.1_1_16:10273773-10274277:-|nuORF	REV__ENST00000566665.1_1_16:10273773-10274277:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	449.7370910644531	2	448.721633	895.428712	0.058126	2.6083E-05	-0.62043	-0.0002784	-0.56231	-0.00025232	448.7212422813736	34.38	1.1434	34.086	33.404	34.547	-0.2942					48	21	3	0	0	0	0.54041	1	12625	12625		14.582	2.0501	1	11330000	+		23992	16550	15131	15217	23074	23074					-0.023184871274679608
PGPLASEPPA	10	Unmodified	_PGPLASEPPA_					0	0	0			REV__ENSG00000266265|ENST00000583337|KLF14	REV__ENSG00000266265|ENST00000583337|KLF14	MSMS	HCT116MG_D190212_S4	4	468.2445373535156	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.943	1	26.632	26.132	27.132	-0.3114								0	0	0	0.91507	1	9622	9622		12.532	0	1		+		23993	14430	15132	15218	23075	23075					0.006137921435197313
PGPLRLLAL	9	Unmodified	_PGPLRLLAL_					0	0	0		nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	MSMS	HCT116MG_D190212_S1	1	475.31243896484375	2	475.313295	948.612037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.608	1	18.608	18.108	19.108	0								0	0	0	0.7676	1	6406	6406		9.3474	0	1				23994	4320	15133	15219	23076	23076					0.1356753144484628
PGPMCHGV	8	Unmodified	_PGPMCHGV_					0	0	0			REV__ENSG00000180992|ENST00000372014|MRPL14	REV__ENSG00000180992|ENST00000372014|MRPL14	MSMS	HCT116MG_D190212_S4	4	399.1764221191406	2	399.175284	796.336015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.971	1	40.594	40.094	41.094	-0.37732								0	0	0	0.8837	1	15051	15051		2.8892	0	1		+		23995	13676	15134	15220	23077	23077					-0.07029986666191235
PGPPADTQP	9	Unmodified	_PGPPADTQP_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;ENST00000415947.1_1_2:205410861-205912470:+|nuORF;PARD3B|p.L589Hfs*23|1|0.05|ENSG00000116117|chr2:205172355-205172356|-/A|frameshift_variant;PARD3B|p.P592Gfs*28|1|0.05|ENSG00000116117|chr2:205172356-205172357|-/TCGCA|frameshift_variant;PARD3B|p.T837Rfs*13|3|0.37|ENSG00000116117|chr2:205301574-205301574|A/-|frameshift_variant;PARD3B|p.K855Sfs*13|1|0.15|ENSG00000116117|chr2:205301631-205301631|A/-|frameshift_variant;nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	440.2124938964844	2	440.213975	878.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.273	1	33.887	33.387	34.387	-0.38558								0	0	0	0.76781	1	12508	12508		8.5933	0.68312	1				23996	2502	15135	15221	23078	23078					-0.030673539246663495
PGPPAWPPSG	10	Unmodified	_PGPPAWPPSG_					0	0	0		ENST00000474229.1_1_14:105174633-105175035:+|nuORF	ENST00000474229.1_1_14:105174633-105175035:+|nuORF	ENST00000474229.1_1_14:105174633-105175035:+|nuORF	MSMS	HCT116MG_D190212_S4	4	481.7383117675781	2	481.74016	961.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.123	1	17.948	17.448	18.448	-0.17501								0	0	0	0.80241	1	6061	6061		28.487	8.0332	1				23997	8183	15136	15222	23079	23079					-0.01650770791047762
PGPPGKLA	8	Unmodified	_PGPPGKLA_					0	0	0			REV__ENSG00000050767|ENST00000390654|COL23A1	REV__ENSG00000050767|ENST00000390654|COL23A1	MSMS	HCT116MG_D190212_S1	1	368.71954345703125	2	368.721239	735.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.445	1	45.445	44.945	45.945	0								0	0	0	0.8837	1	17218	17218		0.79363	0	1		+		23998	10622	15137	15223	23080	23080					0.04962763014123084
PGPPGNEGTP	10	Unmodified	_PGPPGNEGTP_					0	0	0			REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	HCT116MG_D190212_S3	3	462.1466369628906	2	461.716882	921.41921	0.48523	0.00022404	-0.26554	-0.0001226	0.21969	0.00010144	461.71667799905214	25.004	0.67706	24.898	24.579	25.256	-0.10618					21	12	2	0	0	0	0.68372	1	8958	8958		21.747	0	1	3573300	+		23999	14187	15138	15224	23081	23081					-0.04464255412995044
PGPPLKGKSK	10	Unmodified	_PGPPLKGKSK_					0	0	0			REV__CYP2A6|p.V140Wfs*35|1|0.29|ENSG00000255974|chr19:40848689-40848689|C/-|frameshift_variant	REV__CYP2A6|p.V140Wfs*35|1|0.29|ENSG00000255974|chr19:40848689-40848689|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	504.8132019042969	2	504.813659	1007.61277	-0.38021	-0.00019194	-0.48272	-0.00024368	-0.86293	-0.00043562	504.8133538078442	15.545	0.19837	15.383	15.263	15.461	-0.16173					5	3	2	0	0	0	0.87945	1	5048	5048		3.5965	0.31518	1	854730	+		24000	10322	15139	15225	23082	23082					0.10926326093897387
PGPQGSPGQKG	11	Unmodified	_PGPQGSPGQKG_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MSMS	HCT116MG_D190212_S4	4	505.2573547363281	2	505.256705	1008.49886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.491	1	21.273	20.773	21.773	-0.21832								0	0	0	0.74961	1	7422	7422		36.506	9.6225	1				24001	6324	15140	15226	23083	23083					-0.00505188738986817
PGPQRAGR	8	Unmodified	_PGPQRAGR_					0	0	0		ENST00000315872.10_1_2:11484324-11484654:-|nuORF	REV__ENST00000274811.8_1_5:175954527-175954785:-|nuORF	REV__ENST00000274811.8_1_5:175954527-175954785:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	419.73675537109375	2	419.735743	837.456933	-0.04064	-1.7058E-05	0.94664	0.00039734	0.906	0.00038028	419.736071661042	47.415	0.42976	47.415	47.114	47.543	0					13	8	2	0	0	0	0.8672	1	17999	17999		2.3027	0	1	71448000			24002	7083	15141	15227	23084	23084					0.031703003631378124
PGPQRVDLGP	10	Unmodified	_PGPQRVDLGP_					0	0	0		ENST00000525028.6_1_11:803400-804632:-|nuORF	ENST00000525028.6_1_11:803400-804632:-|nuORF	ENST00000525028.6_1_11:803400-804632:-|nuORF	MSMS	HCT116MG_D190212_S4	4	518.281005859375	2	518.282723	1034.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.886	1	23.628	23.128	24.128	-0.25816								0	0	0	0.91906	1	8387	8387		11.64	1.5664	1				24003	8578	15142	15228	23085	23085					0.03499974674764417
PGPRGDPGPR	10	Unmodified	_PGPRGDPGPR_					0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	MULTI-MSMS	HCT116MG_D190212_S4	4	503.26483154296875	2	503.264865	1004.51518	-0.33469	-0.00016844	0.51989	0.00026164	0.1852	9.3203E-05	503.26497958975494	15.94	0.30658	15.776	15.615	15.922	-0.16365					10	5	3	0	0	0	0.75066	1	5174	5174		16.149	3.1066	1	1271100			24004	6481	15143	15229	23086	23086					0.013099372177634905
PGPRGDPGPR	10	Unmodified	_PGPRGDPGPR_					0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	503.264865	1004.51518	0.34572	0.00017399	0.0062409	3.1408E-06	0.35196	0.00017713	503.26482730123	15.814	0.2603	15.899	15.769	16.029	0.085423	0.061535	-0.00019464	NaN	16.149	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3124600			24005	6481	15143	15229							0.013099372177634905
PGPRGDPGPR	10	Unmodified	_PGPRGDPGPR_					0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	503.264865	1004.51518	-0.33469	-0.00016844	0.51989	0.00026164	0.1852	9.3203E-05	503.26497958975494	15.94	0.30658	15.776	15.615	15.922	-0.16365	-0.061535	0.00032237	NaN	16.149	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1271100			24006	6481	15143	15229							0.013099372177634905
PGPRRPRRPRR	11	Unmodified	_PGPRRPRRPRR_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	HCT116MG_D190212_S2	2	467.6239318847656	3	467.62386	1399.84975	0.31205	0.00014592	0.12951	6.0564E-05	0.44156	0.00020649	467.6237909092844	56.495	0.57899	56.313	56.052	56.631	-0.18261					28	10	4	0	0	0	0.74191	1	21781	21781		0.45452	0	1	64340000	+		24007	11568	15144	15230	23087	23087					0.16581910150625845
PGPRRPRRPRR	11	Unmodified	_PGPRRPRRPRR_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MATCH	HCT116MG_D190212_S1	1		3	467.62386	1399.84975	0.22692	0.00010611	-0.078594	-3.6752E-05	0.14832	6.9359E-05	467.62376548944025	56.321	0.46375	56.321	56.119	56.583	0	0.012675	-0.00026621	NaN	0.45452	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29058000	+		24008	11568	15144	15230							0.16581910150625845
PGPRRPRRPRR	11	Unmodified	_PGPRRPRRPRR_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	467.62386	1399.84975	0.31205	0.00014592	0.12951	6.0564E-05	0.44156	0.00020649	467.6237909092844	56.495	0.57899	56.313	56.052	56.631	-0.18261	0.0040099	2.5743E-05	NaN	0.45452	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64340000	+		24009	11568	15144	15230							0.16581910150625845
PGPRRPRRPRR	11	Unmodified	_PGPRRPRRPRR_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	467.62386	1399.84975	0.16333	7.6376E-05	0.29007	0.00013564	0.4534	0.00021202	467.6238543042362	56.598	0.26081	56.292	56.2	56.461	-0.30626	-0.016685	0.00025098	NaN	0.45452	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2052300	+		24010	11568	15144	15230							0.16581910150625845
PGPSGAPGPR	10	Unmodified	_PGPSGAPGPR_					0	0	0			REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF	REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	446.7353210449219	2	446.735409	891.456264	-0.19869	-8.8763E-05	0.30782	0.00013751	0.10912	4.875E-05	446.73546571220453	17.582	1.2487	17.663	17.065	18.314	0.081358					54	23	4	0	0	0	0.58749	2	5751	5751;5981		29.082	0	1	85972000	+		24011	14870	15145	15231	23088;23089	23088					0.00619460923439874
PGPSGAPGPR	10	Unmodified	_PGPSGAPGPR_					0	0	0			REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF	REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	447.2153625488281	2	446.735409	891.456264	-0.19869	-8.8763E-05	0.30782	0.00013751	0.10912	4.875E-05	446.73546571220453	17.582	1.2487	17.663	17.065	18.314	0.081358					54	23	4	0	0	0	0.13449	1	5931	5931		71.922	0	1	85972000	+		24012	14870	15145	15231	23090	23090					0.00619460923439874
PGPSGAPGPR	10	Unmodified	_PGPSGAPGPR_					0	0	0			REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF	REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	446.7355041503906	2	446.735409	891.456264	0.04933	2.2037E-05	0.05347	2.3887E-05	0.1028	4.5924E-05	446.7353636337682	17.837	1.1926	17.662	17.064	18.257	-0.17501					57	22	3	0	0	0	0.60826	2	6011	5772;6011		27.629	0	1	50401000	+		24013	14870	15145	15231	23091;23092	23092					0.00619460923439874
PGPSGPGPA	9	Unmodified	_PGPSGPGPA_					0	0	0			REV__PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	REV__PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	368.6847839355469	2	368.684853	735.355153	-0.10337	-3.811E-05	-0.15578	-5.7433E-05	-0.25914	-9.5542E-05	368.6847838017319	19.643	0.52095	19.703	19.386	19.907	0.059828					15	9	2	0	0	0	0.19218	1	6782	6782		42.095	6.0504	1	3347000	+		24014	12898	15146	15232	23093	23093					-0.02310990779290023
PGPSGPGPA	9	Unmodified	_PGPSGPGPA_					0	0	0			REV__PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	REV__PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	368.6849365234375	2	368.684853	735.355153	-0.0012911	-4.7602E-07	-0.051679	-1.9053E-05	-0.05297	-1.9529E-05	368.6847275916634	19.866	0.56213	19.672	19.33	19.892	-0.19368					15	10	2	0	0	0	0.19218	1	6694	6694		42.095	6.0504	1	2454500	+		24015	12898	15146	15232	23094	23094					-0.02310990779290023
PGPSGPGPA	9	Unmodified	_PGPSGPGPA_					0	0	0			REV__PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	REV__PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	738.244140625	1	736.36243	735.355153	0.82985	0.00061107	0.14338	0.00010558	0.97323	0.00071665	736.3623496945105	19.841	0.82205	19.647	19.174	19.996	-0.19367					30	15	3	0	0	0	0.19218	1	6778	6778		42.095	0	1	11917000	+		24016	12898	15146	15232	23095	23095					-0.02310990779290023
PGPSGPQGKP	10	Unmodified	_PGPSGPQGKP_					0	0	0		ENSG00000168077|ENST00000301904|SCARA3	ENSG00000168077|ENST00000301904|SCARA3	ENSG00000168077|ENST00000301904|SCARA3	MSMS	HCT116MG_D190212_S4	4	461.2428894042969	2	461.243067	920.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.604	1	20.402	19.902	20.902	-0.20133								0	0	0	0.83705	1	7063	7063		24.021	2.2739	1				24017	4981	15147	15233	23096	23096					0.00816327720622212
PGPSGPRGQP	10	Unmodified	_PGPSGPRGQP_					0	0	0		COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1;COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant;nc|ENSG00000168542|P02461-2|COL3A1	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	475.246337890625	2	475.246141	948.477728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.862	1	17.943	17.443	18.443	0.081358								0	0	0	0.45592	1	6029	6029		49.933	2.1843	1				24018	519	15148	15234	23097	23097					0.0014284595214348883
PGPSGRPGPAG	11	Unmodified	_PGPSGRPGPAG_					0	0	0			REV__nc|ENSG00000183287|Q6UXH8-2|CCBE1	REV__nc|ENSG00000183287|Q6UXH8-2|CCBE1	MULTI-MSMS	HCT116MG_D190212_S4	4	475.24639892578125	2	475.246141	948.477728	0.46991	0.00022332	0.033831	1.6078E-05	0.50374	0.0002394	475.24604499268315	21.076	0.57093	20.867	20.448	21.019	-0.20959					14	10	2	0	0	0	0.64329	1	7240	7240		30.637	0	1	1307100	+		24019	13755	15149	15235	23098	23098					0.0014284595214348883
PGPSGSFVAP	10	Unmodified	_PGPSGSFVAP_					0	0	0		HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3;HIVEP3|p.P534Lfs*5|2|0.22|ENSG00000127124|chr1:41583197-41583197|G/-|frameshift_variant;HIVEP3|p.H554Tfs*20|1|0.25|ENSG00000127124|chr1:41583138-41583138|G/-|frameshift_variant	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	HIVEP3|p.G2228Vfs*5|1|0.27|ENSG00000127124|chr1:41510989-41510989|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	458.23052978515625	2	458.232168	914.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.691	1	19.751	19.251	20.251	0.05983								0	0	0	0.81484	1	6767	6767		26.884	3.7352	1				24020	2957	15150	15236	23099	23099					-0.010864770279567892
PGPSGTPGQ	9	Unmodified	_PGPSGTPGQ_					0	0	0		nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1;ENST00000341807.8_1_8:139601498-139734429:-|nuORF	nc|ENSG00000169436|Q8NFW1-3|COL22A1	nc|ENSG00000169436|Q8NFW1-3|COL22A1	MULTI-MSMS	HCT116MG_D190212_S4	4	798.288330078125	1	797.378808	796.371532	0.44895	0.00035798	0.30958	0.00024685	0.75853	0.00060483	797.3789962915403	17.112	1.2275	16.941	16.257	17.484	-0.17047					36	23	3	0	0	0	0.59184	1	5456	5456		11.64	0	1	6032300			24021	5074	15151	15237	23100	23100					-0.034799096131791885
PGPSLYDVG	9	Unmodified	_PGPSLYDVG_					0	0	0			REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MSMS	HCT116MG_D190212_S3	3	452.7251281738281	2	452.724175	903.433798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.389	1	32.11	31.61	32.61	-0.27841								0	0	0	0.76818	1	11869	11869		7.2892	0	1		+		24022	13467	15152	15238	23101	23101					-0.021781832648457566
PGPSPAVTTGP	11	Unmodified	_PGPSPAVTTGP_					0	0	0		GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant;GRID2IP|p.L1003Cfs*46|1|0.47|ENSG00000215045|chr7:6503063-6503063|A/-|frameshift_variant;GRID2IP|p.S1123Lfs*62|1|0.41|ENSG00000215045|chr7:6501814-6501814|G/-|frameshift_variant;ENSG00000215045|ENST00000457091|GRID2IP	GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	491.2412109375	2	490.756007	979.497461	0.084607	4.1521E-05	-0.25724	-0.00012624	-0.17264	-8.4722E-05	490.7556586715769	20.348	0.31187	20.147	19.936	20.248	-0.20133					7	5	2	0	0	0	0.71887	1	6926	6926		14.838	1.3304	1	1147800			24023	9198	15153	15239	23102	23102					0.006891771722280282
PGPSPGPA	8	Unmodified	_PGPSPGPA_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	REV__ENSG00000184985|ENST00000507866|SORCS2	REV__ENSG00000184985|ENST00000507866|SORCS2	MULTI-MSMS	HCT116MG_D190212_S3	3	679.3416137695312	1	679.340966	678.33369	1.047	0.0007113	-0.88759	-0.00060297	0.15945	0.00010832	679.3402135751666	29.495	0.41718	29.259	29.031	29.448	-0.23655					10	7	2	0	0	0	0.50777	1	10714	10714		40.449	2.2974	1	3974000			24024	5794	15154	15240	23103	23103					-0.018343758080050065
PGPSPGPA	8	Unmodified	_PGPSPGPA_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	REV__ENSG00000184985|ENST00000507866|SORCS2	REV__ENSG00000184985|ENST00000507866|SORCS2	MULTI-MSMS	HCT116MG_D190212_S4	4	679.3414916992188	1	679.340966	678.33369	0.66333	0.00045062	-0.11462	-7.7864E-05	0.54871	0.00037276	679.3407425357152	29.43	0.41594	29.081	28.929	29.345	-0.34921					11	7	2	0	0	0	0.50777	1	10646	10646		40.449	2.2974	1	2663500			24025	5794	15154	15240	23104	23104					-0.018343758080050065
PGPSPNAGGAP	11	Unmodified	_PGPSPNAGGAP_					0	0	0			REV__ENST00000519699.1_1_8:8999160-9009036:-|nuORF	REV__ENST00000519699.1_1_8:8999160-9009036:-|nuORF	MSMS	HCT116MG_D190212_S4	4	461.5788879394531	2	461.224874	920.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.687	1	16.521	16.021	17.021	-0.16664								0	0	0	0.9414	1	5481	5481		10.824	1.4765	1		+		24026	16224	15155	15241	23105	23105					-0.02820549176090026
PGPSQHREP	9	Unmodified	_PGPSQHREP_					0	0	0		ENST00000382073.3_1_12:8608624-8608705:+|nuORF	ENST00000382073.3_1_12:8608624-8608705:+|nuORF	ENST00000382073.3_1_12:8608624-8608705:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	503.1074523925781	2	502.749047	1003.48354	0.3439	0.0001729	-1.5241	-0.00076623	-1.1802	-0.00059334	502.74847306191936	21.905	0.31171	21.687	21.581	21.893	-0.21832					8	5	2	0	0	0	0.63193	1	7560	7560		9.3474	0	1	1923200			24027	7580	15156	15242	23106	23106					-0.018060555361898878
PGPSQHREP	9	Unmodified	_PGPSQHREP_					0	0	0		ENST00000382073.3_1_12:8608624-8608705:+|nuORF	ENST00000382073.3_1_12:8608624-8608705:+|nuORF	ENST00000382073.3_1_12:8608624-8608705:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	502.749047	1003.48354	0.3868	0.00019447	-1.2689	-0.00063795	-0.88212	-0.00044349	502.74841291370666	21.649	0.31594	21.668	21.535	21.851	0.018446	-0.0096472	9.0611E-05	NaN	9.3474	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5152100			24028	7580	15156	15242							-0.018060555361898878
PGPSSSSFQN	10	Unmodified	_PGPSSSSFQN_					0	0	0		ENSG00000232125|ENST00000452335|DYTN	ENSG00000232125|ENST00000452335|DYTN	ENSG00000232125|ENST00000452335|DYTN	MULTI-MSMS	HCT116MG_D190212_S4	4	504.2253723144531	2	504.225071	1006.43559	-0.28495	-0.00014368	0.24083	0.00012143	-0.044115	-2.2244E-05	504.225276315548	16.735	2.308	16.568	14.973	17.281	-0.16664					79	45	2	0	0	0	0.76143	1	5172	5172		15.248	0.8431	1	1858500			24029	6509	15157	15243	23107	23107					-0.06737174246882205
PGPSWCHPL	9	Unmodified	_PGPSWCHPL_					0	0	0			REV__ENST00000524886.1_1_11:47436414-47436911:+|nuORF	REV__ENST00000524886.1_1_11:47436414-47436911:+|nuORF	MSMS	HCT116MG_D190212_S4	4	497.23663330078125	2	497.234187	992.453822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.556	1	35.17	34.67	35.67	-0.38606								0	0	0	0.76641	1	13006	13006		13.508	4.1604	1		+		24030	16264	15158	15244	23108	23108					-0.042707108058948506
PGPTGPAGA	9	Unmodified	_PGPTGPAGA_					0	0	0			REV__COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	REV__COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	724.36279296875	1	724.36243	723.355153	0.39596	0.00028682	0.30849	0.00022346	0.70445	0.00051027	724.3626029792185	21.008	0.4683	21.043	20.818	21.287	0.034473					12	8	2	0	0	0	0.058138	1	7295	7295		70.716	0	1	4835600	+		24031	10226	15159	15245	23109	23109					-0.01758990779285341
PGPTGPAGA	9	Unmodified	_PGPTGPAGA_					0	0	0			REV__COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	REV__COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	724.36243	723.355153	0.39596	0.00028682	0.30849	0.00022346	0.70445	0.00051027	724.3626029792185	21.008	0.4683	21.043	20.818	21.287	0.034473	0.052368	3.5557E-05	NaN	70.716	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4835600	+		24032	10226	15159	15245							-0.01758990779285341
PGPTMELVKV	10	Unmodified	_PGPTMELVKV_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	HCT116MG_D190212_S2	2	358.185546875	3	357.535332	1069.58417	0.059227	2.1176E-05	2.0522	0.00073372	2.1114	0.0007549	357.5362673120496	27.404	0.46486	27.062	26.933	27.398	-0.34201					15	8	2	0	0	0	0.30986	1	9955	9955		3.3196	0.24738	1	9594200	+		24033	14288	15160	15246	23110	23110					0.05215840402433969
PGPTPSGTN	9	Unmodified	_PGPTPSGTN_					0	0	0		ENST00000481573.1_1_9:101984645-101984926:+|nuORF;SEC61B|p.M55Cfs*22|1|0.43|ENSG00000106803|chr9:99227954-99227954|G/-|frameshift_variant;ENSG00000106803|ENST00000223641|SEC61B	ENST00000481573.1_1_9:101984645-101984926:+|nuORF	ENST00000481573.1_1_9:101984645-101984926:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	827.3901977539062	1	827.389373	826.382096	0.90168	0.00074604	-0.094927	-7.8542E-05	0.80676	0.0006675	827.389313415054	16.863	0.31271	16.863	16.681	16.994	0					11	5	3	0	0	0	7.9226E-08	1	5708	5708		216.57	94.386	1	6493800			24034	2098	15161	15247	23111	23111					-0.0380392695875571
PGPTQSRYGP	10	Unmodified	_PGPTQSRYGP_					0	0	0			REV__ENST00000359867.7_2_22:38687614-38687800:-|nuORF	REV__ENST00000359867.7_2_22:38687614-38687800:-|nuORF	MSMS	HCT116MG_D190212_S3	3	353.8464050292969	3	353.845446	1058.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.178	1	20.227	19.727	20.727	0.048107								0	0	0	0.91906	1	6964	6964		6.6304	0.43853	1		+		24035	15077	15162	15248	23112	23112					-0.012409022219571852
PGPTTDPLDPK	11	Unmodified	_PGPTTDPLDPK_					0	0	0		ENSG00000203896|ENST00000309546|LIME1;nc|ENSG00000203896|Q9H400-2|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MSMS	HCT116MG_D190212_S4	4	569.29296875	2	569.292953	1136.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.545	1	29.196	28.696	29.696	-0.34921								0	0	0	0.91433	1	10674	10674		18.146	2.8979	1				24036	6315	15163	15249	23113	23113					0.008531005438726424
PGPVSLGGEP	10	Unmodified	_PGPVSLGGEP_					0	0	0			REV__ENSG00000204439|ENST00000375911|C6orf47	REV__ENSG00000204439|ENST00000375911|C6orf47	MULTI-SECPEP	HCT116MG_D190212_S3	3	455.2483825683594	2	455.23745	908.460347	0.1787	8.1352E-05	0.7894	0.00035936	0.9681	0.00044072	455.2378421839253	31.83	0.57265	31.56	31.221	31.794	-0.27028					14	10	2	0	0	0	0.27023	1	11597	11597		32.305	3.8186	1	6425700	+		24037	14197	15164	15250	23114	23114					0.0024550562648073537
PGPVSSPGR	9	Unmodified	_PGPVSSPGR_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	HCT116MG_D190212_S3	3	429.0886535644531	2	427.229959	852.445365	0.11411	4.8751E-05	0.021696	9.2694E-06	0.13581	5.8021E-05	427.22988254035783	21.758	1.1012	21.775	21.166	22.267	0.017384					52	20	4	0	0	0	0.57626	1	7600	7600		12.532	0	1	42816000			24038	5708	15165	15251	23115	23115					0.01324058549153051
PGPWLRQCYAP	11	Unmodified	_PGPWLRQCYAP_					0	0	0			REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	MSMS	HCT116MG_D190212_S2	2	644.31787109375	2	644.318783	1286.62301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.679	1	17.323	16.823	17.823	-0.35647								0	0	0	0.95023	1	6031	6031		6.2058	0.47393	1		+		24039	11474	15166	15252	23116	23116					-0.008834342431555342
PGPWRGQLFCT	11	Unmodified	_PGPWRGQLFCT_					0	0	0			REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF	REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	631.31201171875	2	631.310958	1260.60736	0.33728	0.00021293	1.9172	0.0012104	2.2545	0.0014233	631.3122962329339	26.714	0.31169	26.414	26.234	26.545	-0.30087					8	5	2	0	0	0	0.71271	1	9547	9547		17.113	1.3743	1	1677800	+		24040	16205	15167	15253	23117	23117					-0.012517207602286362
PGPWRGQLFCT	11	Unmodified	_PGPWRGQLFCT_					0	0	0			REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF	REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	631.310958	1260.60736	0.33728	0.00021293	1.9172	0.0012104	2.2545	0.0014233	631.3122962329339	26.714	0.31169	26.414	26.234	26.545	-0.30087	0.014276	-0.00053819	NaN	17.113	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1677800	+		24041	16205	15167	15253							-0.012517207602286362
PGPYAGAL	8	Unmodified	_PGPYAGAL_					0	0	0		ENSG00000181418|ENST00000421952|DDN	ENSG00000181418|ENST00000421952|DDN	ENSG00000181418|ENST00000421952|DDN	MULTI-MSMS	HCT116MG_D190212_S2	2	373.197509765625	2	373.197596	744.38064	-0.32007	-0.00011945	0.2489	9.2887E-05	-0.071174	-2.6562E-05	373.19762360659877	37.206	0.25781	37.103	36.974	37.232	-0.10318					6	4	2	0	0	0	0.86388	1	13967	13967		2.8892	0	1	15704000			24042	5634	15168	15254	23118	23118					-0.0017751625686059924
PGQADPPGS	9	Unmodified	_PGQADPPGS_					0	0	0		ENST00000328024.10_1_19:8468843-8468972:+|nuORF	ENST00000328024.10_1_19:8468843-8468972:+|nuORF	ENST00000328024.10_1_19:8468843-8468972:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	825.373779296875	1	825.373723	824.366446	0.81294	0.00067098	-0.1648	-0.00013602	0.64814	0.00053496	825.3735386115297	22.255	1.506	22.027	20.897	22.403	-0.22777					37	28	2	0	0	0	0.17018	1	7611	7611		44.407	4.4497	1	4304400			24043	7148	15169	15255	23119	23119					-0.0527621347580407
PGQAGPSGPP	10	Unmodified	_PGQAGPSGPP_					0	0	0		COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1;COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant;nc|ENSG00000168542|P02461-2|COL3A1	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	864.4208984375	1	864.421007	863.413731	0.86744	0.00074984	-0.011414	-9.8661E-06	0.85603	0.00073997	864.4208112037682	25.371	1.1451	25.265	24.527	25.672	-0.10618					35	21	2	0	0	0	0.51573	1	8993	8993		34.102	7.7612	1	10642000			24044	519	15170	15256	23120	23120					-0.023439342047936407
PGQAGPSGPP	10	Unmodified	_PGQAGPSGPP_					0	0	0		COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1;COL3A1|p.G786Dfs*5|1|0.33|ENSG00000168542|chr2:189001549-189001549|C/-|frameshift_variant;nc|ENSG00000168542|P02461-2|COL3A1	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	864.4219970703125	1	864.421007	863.413731	0.89649	0.00077494	0.041873	3.6196E-05	0.93836	0.00081114	864.4208783038159	25.38	1.092	25.101	24.434	25.526	-0.27958					40	20	3	0	0	0	0.54141	2	8849	8849;8872		32.305	3.2239	1	9032200			24045	519	15170	15256	23121;23122	23121					-0.023439342047936407
PGQDGIPGQP	10	Unmodified	_PGQDGIPGQP_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1;COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant;COL8A1|p.P576Lfs*20|1|0.09|ENSG00000144810|chr3:99795624-99795624|C/-|frameshift_variant;COL8A1|p.H599Mfs*24|2|0.46|ENSG00000144810|chr3:99795690-99795690|C/-|frameshift_variant	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2381896972656	2	483.237981	964.461409	0.18177	8.784E-05	0.029307	1.4162E-05	0.21108	0.000102	483.2378390930336	18.623	0.52079	18.693	18.406	18.927	0.069159					15	9	3	0	0	0	0.61891	2	6359	6359;6388		26.884	1.1966	1	5262700			24046	3885	15171	15257	23123;23124	23123					-0.022242800046115008
PGQDGIPGQP	10	Unmodified	_PGQDGIPGQP_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1;COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant;COL8A1|p.P576Lfs*20|1|0.09|ENSG00000144810|chr3:99795624-99795624|C/-|frameshift_variant;COL8A1|p.H599Mfs*24|2|0.46|ENSG00000144810|chr3:99795690-99795690|C/-|frameshift_variant	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2383728027344	2	483.237981	964.461409	0.16366	7.9087E-05	-0.17896	-8.6479E-05	-0.015296	-7.3916E-06	483.2377817966677	19.373	0.83346	19.433	19.229	20.063	0.05983					21	15	2	0	0	0	0.23641	1	6686	6686		56.177	12.319	1	2531800			24047	3885	15171	15257	23125	23125					-0.022242800046115008
PGQDINEHI	9	Unmodified	_PGQDINEHI_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	HCT116MG_D190212_S2	2	511.7490539550781	2	511.748713	1021.48287	0.25734	0.00013169	-0.27832	-0.00014243	-0.020983	-1.0738E-05	511.74855962009286	19.74	0.72695	19.365	18.934	19.661	-0.37503					35	13	4	0	0	0	0.41514	1	6843	6843		21.747	1.3321	1	14377000			24048	6386	15172	15258	23126	23126					-0.027008949758965173
PGQDRWRGPA	10	Unmodified	_PGQDRWRGPA_					0	0	0		ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3;nc|ENSG00000198758|Q8TE67-2|EPS8L3;EPS8L3|p.S264Qfs*23|1|0.39|ENSG00000198758|chr1:109757987-109757988|-/T|frameshift_variant;EPS8L3|p.N273Tfs*33|1|0.43|ENSG00000198758|chr1:109757958-109757958|T/-|frameshift_variant	ENSG00000198758|ENST00000361965|EPS8L3	ENSG00000198758|ENST00000361965|EPS8L3	MSMS	HCT116MG_D190212_S4	4	570.2888793945312	2	570.288871	1138.56319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.123	1	26.811	26.311	27.311	-0.3114								0	0	0	0.89194	1	9695	9695		16.942	3.0362	1				24049	6267	15173	15259	23127	23127					-0.0005498886218902044
PGQEGAAAP	9	Unmodified	_PGQEGAAAP_					0	0	0		ENSG00000169258|ENST00000303991|GPRIN1;GPRIN1|p.T702Rfs*12|1|0.44|ENSG00000169258|chr5:176597731-176597731|T/-|frameshift_variant;nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	399.19293212890625	2	399.193042	796.371532	-0.034359	-1.3716E-05	0.0076031	3.0351E-06	-0.026756	-1.0681E-05	399.193016445079	19.618	0.41681	19.678	19.49	19.907	0.05983					15	7	3	0	0	0	0.027492	1	6743	6743		88.904	3.5469	1	5949500			24050	5063	15174	15260	23128	23128					-0.03479909613201926
PGQEGAAAP	9	Unmodified	_PGQEGAAAP_					0	0	0		ENSG00000169258|ENST00000303991|GPRIN1;GPRIN1|p.T702Rfs*12|1|0.44|ENSG00000169258|chr5:176597731-176597731|T/-|frameshift_variant;nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	MULTI-MSMS	HCT116MG_D190212_S4	4	399.1929016113281	2	399.193042	796.371532	0.093581	3.7357E-05	-0.1701	-6.7901E-05	-0.076516	-3.0545E-05	399.1928858732062	19.785	0.45818	19.592	19.434	19.892	-0.19368					13	8	2	0	0	0	0.027492	1	6734	6734		88.904	3.6316	1	2083100			24051	5063	15174	15260	23129	23129					-0.03479909613201926
PGQEGREGAP	10	Unmodified	_PGQEGREGAP_					0	0	0			REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant;REV__COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	499.2391052246094	2	499.238513	996.462472	0.39403	0.00019672	0.57764	0.00028838	0.97168	0.0004851	499.23886945855025	18.904	0.20827	18.973	18.823	19.031	0.069157					6	3	2	0	0	0	0.56527	1	6457	6457		30.637	5.2372	1	2066600	+		24052	10227;10226	15175	15261	23130	23130					-0.0359006563571711
PGQEGREGAP	10	Unmodified	_PGQEGREGAP_					0	0	0			REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant;REV__COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	499.2386779785156	2	499.238513	996.462472	0.37882	0.00018912	-0.17814	-8.8936E-05	0.20068	0.00010019	499.2384715660268	19.099	0.25994	18.912	18.713	18.973	-0.18674					7	4	2	0	0	0	0.56527	1	6458	6458		30.637	5.2372	1	1301400	+		24053	10227;10226	15175	15261	23131	23131					-0.0359006563571711
PGQEGREGAP	10	Unmodified	_PGQEGREGAP_					0	0	0			REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant;REV__COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	REV__COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	499.238513	996.462472	0.37882	0.00018912	-0.17814	-8.8936E-05	0.20068	0.00010019	499.2384715660268	19.099	0.25994	18.912	18.713	18.973	-0.18674	-0.030334	-0.00062845	NaN	30.637	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1301400	+		24054	10227;10226	15175	15261							-0.0359006563571711
PGQELADRPPI	11	Unmodified	_PGQELADRPPI_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	MULTI-MSMS	HCT116MG_D190212_S4	4	597.7803955078125	2	596.81967	1191.62479	1.2113	0.00072293	-0.63037	-0.00037622	0.58094	0.00034672	596.8191441568767	33.876	0.20745	33.491	33.362	33.569	-0.38426					9	3	3	0	0	0	0.73364	1	12300	12300		9.3831	2.66	1	6695100			24055	1281	15176	15262	23132	23132					0.036638980464203996
PGQELGETALH	11	Unmodified	_PGQELGETALH_					0	0	0		ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant	ASAP1|p.P792Lfs*20|1|0.1|ENSG00000153317|chr8:130112120-130112120|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	576.2882080078125	2	576.288202	1150.56185	0.45552	0.00026251	-0.34857	-0.00020087	0.10696	6.1639E-05	576.2879679566136	27.679	0.45785	27.358	27.044	27.502	-0.32157					15	8	2	0	0	0	0.70377	1	9874	9874		20.415	7.3721	1	3007100			24056	195	15177	15263	23133	23133					-0.0074066774163839
PGQELTYSR	9	Unmodified	_PGQELTYSR_					0	0	0			REV__ENST00000480331.5_1_1:155023340-155028240:+|nuORF	REV__ENST00000480331.5_1_1:155023340-155028240:+|nuORF	MSMS	HCT116MG_D190212_S4	4	525.7665405273438	2	525.764363	1049.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.893	1	23.635	23.135	24.135	-0.25816								0	0	0	0.71946	1	8390	8390		18.146	1.0335	1		+		24057	9849	15178	15264	23134	23134					-0.008603219418091612
PGQEPRCGPE	10	Unmodified	_PGQEPRCGPE_					0	0	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	535.2402954101562	2	535.240198	1068.46584	0.35363	0.00018928	0.57395	0.0003072	0.92758	0.00049648	535.2405141303616	18.614	0.77859	18.433	18.097	18.875	-0.18052					26	14	3	0	0	0	0.72678	1	6244	6244		18.146	1.9972	1	4497900			24058	4530	15179	15265	23135	23135					-0.06565138853375174
PGQEYNFLKME	11	Unmodified	_PGQEYNFLKME_					0	0	0		BMP1|p.N614Tfs*138|1|0.42|ENSG00000168487|chr8:22196747-22196747|C/-|frameshift_variant;nc|ENSG00000168487|P13497-4|BMP1;BMP1|p.N614Qfs*21|1|0.3|ENSG00000168487|chr8:22196746-22196747|-/C|frameshift_variant;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;BMP1|p.V817Sfs*52|1|0.34|ENSG00000168487|chr8:22207385-22207385|C/-|frameshift_variant;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;TLL2|p.G891Afs*3|1|0.44|ENSG00000095587|chr10:96370306-96370306|C/-|frameshift_variant;ENSG00000095587|ENST00000357947|TLL2;nc|ENSG00000038295|O43897-2|TLL1;TLL1|p.F391Lfs*19|1|0.33|ENSG00000038295|chr4:166039350-166039350|T/-|frameshift_variant;TLL2|p.G466Efs*3|2|0.35|ENSG00000095587|chr10:96396008-96396008|C/-|frameshift_variant;ENSG00000038295|ENST00000061240|TLL1;ENSG00000168487|ENST00000306385|BMP1;ENST00000520982.5_1_8:22034120-22069238:+|nuORF	BMP1|p.N614Tfs*138|1|0.42|ENSG00000168487|chr8:22196747-22196747|C/-|frameshift_variant;ENSG00000038295|ENST00000061240|TLL1;ENSG00000168487|ENST00000306385|BMP1	ENSG00000168487|ENST00000306385|BMP1	MSMS	HCT116MG_D190212_S1	1	678.3209228515625	2	678.318645	1354.62274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.978	1	21.978	21.478	22.478	0								0	0	0	0.95196	1	7759	7759		5.2969	0.39987	1				24059	269;5014;993	15180	15266	23136	23136					-0.0403889875369714
PGQGPGSP	8	Unmodified	_PGQGPGSP_					0	0	0		ENSG00000167566|ENST00000335999|NCKAP5L;NCKAP5L|p.I725Yfs*12|1|0.11|ENSG00000167566|chr12:49795688-49795688|C/-|frameshift_variant;NCKAP5L|p.P949Rfs*23|1|0.14|ENSG00000167566|chr12:49795014-49795014|G/-|frameshift_variant;nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	MULTI-MSMS	HCT116MG_D190212_S4	4	696.3320922851562	1	696.33113	695.323853	0.75076	0.00052278	-0.43279	-0.00030137	0.31796	0.00022141	696.3306458976008	20.632	0.5718	20.43	20.144	20.716	-0.20133					14	10	2	0	0	0	0.5791	1	7084	7084		34.187	0	1	2482600			24060	4934	15181	15267	23137	23137					-0.03599563813384066
PGQLAREFDD	10	Unmodified	_PGQLAREFDD_					0	0	0			REV__ENSG00000113369|ENST00000265138|ARRDC3	REV__ENSG00000113369|ENST00000265138|ARRDC3	MULTI-SECPEP	HCT116MG_D190212_S4	4	574.7882690429688	2	574.272552	1146.53055	0.31075	0.00017846	-1.3669	-0.00078495	-1.0561	-0.0006065	574.2714722438216	18.024	0.15603	17.849	17.74	17.896	-0.17501					4	2	2	0	0	0	0.30526	1	5979	5979		14.838	4.7643	1	865280	+		24061	11481	15182	15268	23138	23138					-0.03685240775712373
PGQLRGPTGAP	11	Unmodified	_PGQLRGPTGAP_					0	0	0			REV__ENST00000508471.5_1_4:2272067-2272400:-|nuORF	REV__ENST00000508471.5_1_4:2272067-2272400:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	525.7885131835938	2	525.788173	1049.56179	0.25185	0.00013242	-0.19468	-0.00010236	0.057164	3.0056E-05	525.7882215215927	23.371	0.78341	23.123	22.696	23.48	-0.24775					25	14	2	0	0	0	0.70691	1	8137	8137		19.257	4.0085	1	3933600	+		24062	16161	15183	15269	23139	23139					0.03899377049060604
PGQNGSRRPL	10	Unmodified	_PGQNGSRRPL_					0	0	0		nc|ENSG00000254827|Q8N1D0-2|SLC22A18AS;nc|ENSG00000254827|Q8N1D0|SLC22A18AS	nc|ENSG00000254827|Q8N1D0-2|SLC22A18AS	nc|ENSG00000254827|Q8N1D0-2|SLC22A18AS	MSMS	HCT116MG_D190212_S4	4	541.2976684570312	2	541.296696	1080.57884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.04	1	29.683	29.183	30.183	-0.3571								0	0	0	0.88261	1	10873	10873		18.146	0.011366	1				24063	9655	15184	15270	23140	23140					0.04177297654837275
PGQPAGRP	8	Unmodified	_PGQPAGRP_					0	0	0			REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	391.2840576171875	2	390.211569	778.408586	-0.14756	-5.758E-05	0.093456	3.6468E-05	-0.054105	-2.1113E-05	390.2115534728063	16.385	0.72806	16.47	16.133	16.861	0.085424					30	13	4	0	0	0	0.81097	1	5354	5354		10.183	0	1	8643800	+		24064	15003	15185	15271	23141	23141					0.010518067232396788
PGQPATLWASY	11	Unmodified	_PGQPATLWASY_					0	0	0		ENST00000264560.11_1_19:746959-747340:+|nuORF	ENST00000264560.11_1_19:746959-747340:+|nuORF	ENST00000264560.11_1_19:746959-747340:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	595.3131103515625	2	595.795663	1189.57677	1.1231	0.00066914	-0.48895	-0.00029131	0.63415	0.00037782	595.7952466886255	46.829	0.36382	46.458	46.276	46.64	-0.37134					9	6	2	0	0	0	0.74191	1	17374	17374		5.7319	0.43497	1	8575800			24065	6893	15186	15272	23142	23142					-0.010431758736103802
PGQPDGPK	8	Unmodified	_PGQPDGPK_					0	0	0			REV__SCAF1|p.P1288Qfs*57|1|0.5|ENSG00000126461|chr19:49658318-49658318|C/-|frameshift_variant	REV__SCAF1|p.P1288Qfs*57|1|0.5|ENSG00000126461|chr19:49658318-49658318|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	795.4009399414062	1	795.399544	794.392267	0.44744	0.00035589	-1.905	-0.0015152	-1.4576	-0.0011593	795.4000079104441	17.042	0.20771	16.875	16.763	16.971	-0.16664					5	3	2	0	0	0	0.64404	1	5644	5644		28.487	1.6032	1	603130	+		24066	17495	15187	15273	23143	23143					-0.013153192335153108
PGQPDGPK	8	Unmodified	_PGQPDGPK_					0	0	0			REV__SCAF1|p.P1288Qfs*57|1|0.5|ENSG00000126461|chr19:49658318-49658318|C/-|frameshift_variant	REV__SCAF1|p.P1288Qfs*57|1|0.5|ENSG00000126461|chr19:49658318-49658318|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	795.399658203125	1	795.399544	794.392267	0.73422	0.000584	0.15282	0.00012156	0.88705	0.00070556	795.3993777268527	18.06	0.36392	17.885	17.688	18.051	-0.17501					9	6	2	0	0	0	0.7524	1	6053	6053		16.942	5.302	1	2467200	+		24067	17495	15187	15273	23144	23144					-0.013153192335153108
PGQPDGPK	8	Unmodified	_PGQPDGPK_					0	0	0			REV__SCAF1|p.P1288Qfs*57|1|0.5|ENSG00000126461|chr19:49658318-49658318|C/-|frameshift_variant	REV__SCAF1|p.P1288Qfs*57|1|0.5|ENSG00000126461|chr19:49658318-49658318|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	795.399544	794.392267	0.57342	0.0004561	0.27178	0.00021618	0.8452	0.00067227	795.3991653112197	18.362	0.26132	17.999	17.904	18.165	-0.36325	0.056847	7.6377E-05	NaN	16.942	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2916500	+		24068	17495	15187	15273							-0.013153192335153108
PGQPDGPK	8	Unmodified	_PGQPDGPK_					0	0	0			REV__SCAF1|p.P1288Qfs*57|1|0.5|ENSG00000126461|chr19:49658318-49658318|C/-|frameshift_variant	REV__SCAF1|p.P1288Qfs*57|1|0.5|ENSG00000126461|chr19:49658318-49658318|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	795.399544	794.392267	0.73422	0.000584	0.15282	0.00012156	0.88705	0.00070556	795.3993777268527	18.06	0.36392	17.885	17.688	18.051	-0.17501	-0.056847	-1.8244E-05	NaN	16.942	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2467200	+		24069	17495	15187	15273							-0.013153192335153108
PGQPGEPGQ	9	Unmodified	_PGQPGEPGQ_					0	0	0			REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	433.7037048339844	2	433.703774	865.392996	0.10425	4.5215E-05	-0.17685	-7.67E-05	-0.072595	-3.1485E-05	433.70370910884293	15.97	0.67612	16.055	15.769	16.445	0.085424					17	12	3	0	0	0	0.077982	1	5251	5251		62.573	1.2152	1	3713400	+		24070	10237	15188	15274	23145	23145					-0.04508524584468887
PGQPLECARAP	11	Unmodified	_PGQPLECARAP_					0	0	0			REV__nc|ENSG00000101213|Q13882-2|PTK6	REV__nc|ENSG00000101213|Q13882-2|PTK6	MSMS	HCT116MG_D190212_S4	4	380.1944580078125	3	380.193969	1137.56008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.83	1	20.621	20.121	21.121	-0.20959								0	0	0	0.93717	1	7155	7155		7.0371	1.6344	1		+		24071	17095	15189	15275	23146	23146					-0.0032000003122902854
PGQPPSPAP	9	Unmodified	_PGQPPSPAP_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2;ENST00000594671.5_1_19:4676136-4676472:-|nuORF	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MSMS	HCT116MG_D190212_S3	3	424.2177429199219	2	424.21906	846.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.478	1	25.372	24.872	25.872	-0.10618								0	0	0	0.76641	1	9098	9098		13.508	0.97634	1				24072	3412	15190	15276	23147	23147					-0.005787461994373189
PGQPPSPAP	9	Unmodified	_PGQPPSPAP_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2;ENST00000594671.5_1_19:4676136-4676472:-|nuORF	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MSMS	HCT116MG_D190212_S4	4	424.2176513671875	2	424.21906	846.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.532	1	25.252	24.752	25.752	-0.27958								0	0	0	0.76641	1	9052	9052		13.508	0.97634	1				24073	3412	15190	15276	23148	23148					-0.005787461994373189
PGQPPTSGSPP	11	Unmodified	_PGQPPTSGSPP_					0	0	0			REV__ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant	REV__ULK1|p.G873Afs*18|1|0.22|ENSG00000177169|chr12:131919313-131919313|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	511.2510070800781	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.402	1	26.253	25.753	26.753	-0.14924								0	0	0	0.85804	1	9470	9470		25.399	2.2509	1		+		24074	13564	15191	15277	23149	23149					-0.021800108331376578
PGQPRGGQPPP	11	Unmodified	_PGQPRGGQPPP_					0	0	0			REV__ENSG00000134551|ENST00000396400|PRH2	REV__ENSG00000134551|ENST00000396400|PRH2	MULTI-MSMS	HCT116MG_D190212_S3	3	544.2864990234375	2	544.285797	1086.55704	0.48738	0.00026527	0.22037	0.00011994	0.70775	0.00038522	544.2857727343912	27.003	0.4689	26.833	26.547	27.016	-0.16933					12	8	2	0	0	0	0.65731	1	9726	9726		29.082	7.5446	1	3589700	+		24075	12060	15192	15278	23150	23150					0.01722492906287698
PGQPSSPQ	8	Unmodified	_PGQPSSPQ_					0	0	0		ENSG00000169217|ENST00000305596|CD2BP2	ENSG00000169217|ENST00000305596|CD2BP2	ENSG00000169217|ENST00000305596|CD2BP2	MULTI-MSMS	HCT116MG_D190212_S4	4	797.3798828125	1	797.378808	796.371532	1.1616	0.00092627	-0.25475	-0.00020314	0.90689	0.00072313	797.3785483122901	33.574	0.49502	33.189	32.918	33.413	-0.38426					20	14	2	0	0	0	0.60054	1	12170	12170		32.305	2.0807	1	5278200			24076	5057	15193	15279	23151	23151					-0.03479909613190557
PGQQPGPQPA	10	Unmodified	_PGQQPGPQPA_					0	0	0			REV__ENST00000359895.6_1_5:176918410-176919559:-|nuORF	REV__ENST00000359895.6_1_5:176918410-176919559:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	488.7466125488281	2	488.745973	975.477394	0.14269	6.9737E-05	0.19958	9.7542E-05	0.34226	0.00016728	488.7462505902954	23.443	0.3126	23.403	23.239	23.552	-0.03968					9	5	2	0	0	0	0.20843	1	8318	8318		58.679	8.7458	1	1937500	+		24077	15078	15194	15280	23152	23152					-0.011325737677225334
PGQQPGPQPA	10	Unmodified	_PGQQPGPQPA_					0	0	0			REV__ENST00000359895.6_1_5:176918410-176919559:-|nuORF	REV__ENST00000359895.6_1_5:176918410-176919559:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	488.7454528808594	2	488.745973	975.477394	-0.11235	-5.4909E-05	-0.060206	-2.9425E-05	-0.17255	-8.4334E-05	488.74605568940683	23.633	0.31207	23.385	23.168	23.48	-0.24775					8	5	2	0	0	0	0.20843	1	8301	8301		58.679	8.7458	1	1567200	+		24078	15078	15194	15280	23153	23153					-0.011325737677225334
PGQQPGPQPA	10	Unmodified	_PGQQPGPQPA_					0	0	0			REV__ENST00000359895.6_1_5:176918410-176919559:-|nuORF	REV__ENST00000359895.6_1_5:176918410-176919559:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	488.745973	975.477394	0.14269	6.9737E-05	0.19958	9.7542E-05	0.34226	0.00016728	488.7462505902954	23.443	0.3126	23.403	23.239	23.552	-0.03968	0.0092265	8.1746E-05	NaN	58.679	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1937500	+		24079	15078	15194	15280							-0.011325737677225334
PGQQPGPQPA	10	Unmodified	_PGQQPGPQPA_					0	0	0			REV__ENST00000359895.6_1_5:176918410-176919559:-|nuORF	REV__ENST00000359895.6_1_5:176918410-176919559:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	488.745973	975.477394	-0.11235	-5.4909E-05	-0.060206	-2.9425E-05	-0.17255	-8.4334E-05	488.74605568940683	23.633	0.31207	23.385	23.168	23.48	-0.24775	-0.0092265	-0.00017219	NaN	58.679	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1567200	+		24080	15078	15194	15280							-0.011325737677225334
PGQRADLP	8	Unmodified	_PGQRADLP_					0	0	0			REV__ENST00000470046.1_1_22:50881704-50882673:+|nuORF	REV__ENST00000470046.1_1_22:50881704-50882673:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	429.0885925292969	2	427.229959	852.445365	0.20919	8.9373E-05	-0.12151	-5.1911E-05	0.087685	3.7462E-05	427.22981363006164	22.037	0.9865	21.81	21.157	22.143	-0.22777					50	18	4	0	0	0	0.81097	1	7687	7687		10.183	0.83596	1	33929000	+		24081	15861	15195	15281	23154	23154					0.01324058549118945
PGQRPGFKYWY	11	Unmodified	_PGQRPGFKYWY_					0	0	0		PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20	PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant	PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	699.8552856445312	2	699.851304	1397.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.85	1	32.471	31.971	32.971	-0.37924								0	0	0	0.94416	1	11981	11981		9.3831	2.2814	1				24082	954	15196	15282	23155	23155					0.005118835543271416
PGQSAHPDP	9	Unmodified	_PGQSAHPDP_					0	0	0			REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	MSMS	HCT116MG_D190212_S4	4	453.2102966308594	2	453.209224	904.403895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.024	1	32.642	32.142	33.142	-0.38223								0	0	0	0.76781	1	12051	12051		8.5933	2.8329	1		+		24083	13004	15197	15283	23156	23156					-0.052131222102048014
PGQSGPPGAP	10	Unmodified	_PGQSGPPGAP_					0	0	0			REV__COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	REV__COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	432.71405029296875	2	432.714142	863.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.435	1	25.156	24.656	25.656	-0.27958								0	0	0	0.80241	1	9013	9013		28.487	1.6032	1		+		24084	10242	15198	15284	23157	23157					-0.023439342048050094
PGQWLWRFQQQ	11	Unmodified	_PGQWLWRFQQQ_					0	0	0		chr12:54283162-54284258|477|49.07|0.0|22.23|+|1|HNRNPA1,HNRNPA1|1	chr12:54283162-54284258|477|49.07|0.0|22.23|+|1|HNRNPA1,HNRNPA1|1	chr12:54283162-54284258|477|49.07|0.0|22.23|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S4	4	737.3696899414062	2	737.372935	1472.73132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.113	1	36.728	36.228	37.228	-0.38486								0	0	0	0.95581	1	13607	13607		3.2813	0.28607	1				24085	444	15199	15285	23158	23158					0.013860733316050755
PGQWMLSCQN	10	Unmodified	_PGQWMLSCQN_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	MSMS	HCT116MG_D190212_S3	3	582.2525024414062	2	582.252251	1162.48995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.638	1	20.672	20.172	21.172	0.034473								0	0	0	0.90475	1	7149	7149		14.838	2.5976	1			+	24086	539	15200	15286	23159	23159					-0.08479621691344619
PGRAEGAPA	9	Unmodified	_PGRAEGAPA_					0	0	0		ENST00000413698.5_1_7:50344393-50358647:+|nuORF	ENST00000413698.5_1_7:50344393-50358647:+|nuORF	ENST00000413698.5_1_7:50344393-50358647:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	413.21429443359375	2	413.214309	824.414065	-0.059099	-2.4421E-05	0.066291	2.7392E-05	0.0071916	2.9717E-06	413.21431627036026	16.646	0.31211	16.731	16.549	16.861	0.085424					10	5	3	0	0	0	0.2853	1	5542	5542		32.305	0	1	4421700			24087	7744	15201	15287	23160	23160					-0.005165144849570424
PGRAEGAPA	9	Unmodified	_PGRAEGAPA_					0	0	0		ENST00000413698.5_1_7:50344393-50358647:+|nuORF	ENST00000413698.5_1_7:50344393-50358647:+|nuORF	ENST00000413698.5_1_7:50344393-50358647:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	413.214309	824.414065	-0.07167	-2.9615E-05	0.14733	6.0879E-05	0.075661	3.1264E-05	413.2143754946389	17.232	0.31281	16.883	16.665	16.978	-0.34933	0.075732	3.3844E-05	NaN	32.305	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2705100			24088	7744	15201	15287							-0.005165144849570424
PGRALSPAA	9	Unmodified	_PGRALSPAA_					0	0	0		ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	MSMS	HCT116MG_D190212_S4	4	420.2406005859375	2	420.240327	838.466101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.313	1	27.982	27.482	28.482	-0.33138								0	0	0	0.76641	1	10176	10176		13.508	0	1				24089	8464	15202	15288	23161	23161					0.040406489287988734
PGRAPEAAS	9	Unmodified	_PGRAPEAAS_					0	0	0			REV__TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant	REV__TTC14|p.Q302Tfs*15|1|0.25|ENSG00000163728|chr3:180605804-180605805|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	429.0886535644531	2	428.219591	854.42463	0.062073	2.6581E-05	0.070578	3.0223E-05	0.13265	5.6804E-05	428.2194881224737	16.17	0.78018	16.255	15.769	16.549	0.085424					30	14	3	0	0	0	0.51829	1	5288	5288		15.847	1.0089	1	2953300	+		24090	12947	15203	15289	23162	23162					-0.00840531830533564
PGRAQPEDPQ	10	Unmodified	_PGRAQPEDPQ_					0	0	0			REV__ENST00000480033.2_1_1:27885247-27930860:-|nuORF	REV__ENST00000480033.2_1_1:27885247-27930860:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	548.257568359375	2	547.764894	1093.51524	0.43954	0.00024076	0.29353	0.00016079	0.73307	0.00040155	547.7650030917116	18.491	0.93327	18.311	17.734	18.667	-0.18052					39	17	3	0	0	0	0.67188	1	6044	6044		22.736	0.078198	1	6811000	+		24091	15942	15204	15290	23163	23163					-0.02778107572908084
PGREQLLLLP	10	Unmodified	_PGREQLLLLP_					0	0	0		ENST00000465984.5_1_2:219247091-219251606:+|nuORF;ENST00000475225.5_1_2:219247091-219251606:+|nuORF;ENST00000492413.5_1_2:219247091-219251606:+|nuORF;ENST00000469449.1_1_2:219248824-219251606:+|nuORF	ENST00000465984.5_1_2:219247091-219251606:+|nuORF	ENST00000465984.5_1_2:219247091-219251606:+|nuORF	MSMS	HCT116MG_D190212_S3	3	568.3440551757812	2	568.345323	1134.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.243	1	34.943	34.443	35.443	-0.29922								0	0	0	0.95179	1	13001	13001		4.3292	0.38484	1				24092	8102	15205	15291	23164	23164					0.11414266811129892
PGRGEPRYIA	10	Unmodified	_PGRGEPRYIA_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000486194.1_1_6:29691304-29692118:+|nuORF	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-SECPEP	HCT116MG_D190212_S4	4	372.2225646972656	3	372.536724	1114.58834	0.0050847	1.8942E-06	-0.17827	-6.6412E-05	-0.17319	-6.4518E-05	372.5367535983461	26.872	0.15575	26.561	26.431	26.587	-0.3114					4	2	2	0	0	0	0.31123	1	9596	9596		0.77653	0.50751	1	3423300			24093	6347	15206	15292	23165	23165					0.03563065940375054
PGRGGCGP	8	Unmodified	_PGRGGCGP_					0	0	0			REV__ENST00000538966.5_1_X:153039107-153039924:+|nuORF	REV__ENST00000538966.5_1_X:153039107-153039924:+|nuORF	MSMS	HCT116MG_D190212_S1	1	350.6646423339844	2	350.663398	699.312243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.566	1	23.566	23.066	24.066	0								0	0	0	0.8837	1	8398	8398		2.8892	0	1		+		24094	16357	15207	15293	23166	23166					-0.049440841083537634
PGRGGPPPG	9	Unmodified	_PGRGGPPPG_					0	0	0		ENSG00000105617|ENST00000222224|LENG1	ENSG00000105617|ENST00000222224|LENG1	ENSG00000105617|ENST00000222224|LENG1	MSMS	HCT116MG_D190212_S3	3	396.211669921875	2	396.211569	790.408586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.913	1	15.999	15.499	16.499	0.085423								0	0	0	0.71969	1	5243	5243		18.135	0	1				24095	2016	15208	15294	23167	23167					0.0049980672323499675
PGRGGQPQRGP	11	Unmodified	_PGRGGQPQRGP_					0	0	0			REV__ENST00000532119.5_2_11:117693395-117698753:-|nuORF	REV__ENST00000532119.5_2_11:117693395-117698753:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	553.7958984375	2	553.794321	1105.57409	0.38076	0.00021086	1.0477	0.00058019	1.4284	0.00079106	553.7948983738755	18.259	0.31279	18.335	18.205	18.518	0.076334					8	5	2	0	0	0	0.70691	1	6225	6225		19.257	5.3509	1	1680600	+		24096	16319	15209	15295	23168	23168					0.025524135121031577
PGRGGQPQRGP	11	Unmodified	_PGRGGQPQRGP_					0	0	0			REV__ENST00000532119.5_2_11:117693395-117698753:-|nuORF	REV__ENST00000532119.5_2_11:117693395-117698753:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	553.2913208007812	2	553.794321	1105.57409	0.38076	0.00021086	1.0477	0.00058019	1.4284	0.00079106	553.7948983738755	18.259	0.31279	18.335	18.205	18.518	0.076334					8	5	2	0	0	0	0.36183	1	6251	6251		13.906	4.5229	1	1680600	+		24097	16319	15209	15295	23169	23169					0.025524135121031577
PGRHWQPDA	9	Unmodified	_PGRHWQPDA_					0	0	0		ENST00000588962.1_1_19:11034750-11034861:-|nuORF	ENST00000588962.1_1_19:11034750-11034861:-|nuORF	ENST00000588962.1_1_19:11034750-11034861:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	532.2562255859375	2	532.25704	1062.49953	0.44232	0.00023543	-1.7539	-0.00093352	-1.3116	-0.00069809	532.2562944943127	23.652	0.78173	23.612	23.239	24.021	-0.03968					23	14	2	0	0	0	0.30117	1	8354	8354		30.637	30.637	1	2634500			24098	9017	15210	15296	23170	23170					-0.029223492992969113
PGRKDAGPPGA	11	Unmodified	_PGRKDAGPPGA_					0	0	0		ENST00000367108.7_1_1:206809048-206811012:+|nuORF;DYRK3|p.G467Vfs*21|1|0.52|ENSG00000143479|chr1:206648593-206648593|G/-|frameshift_variant;ENSG00000143479|ENST00000367109|DYRK3	ENST00000367108.7_1_1:206809048-206811012:+|nuORF	ENST00000367108.7_1_1:206809048-206811012:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	511.77239990234375	2	511.772522	1021.53049	0.19556	0.00010008	0.47356	0.00024235	0.66912	0.00034244	511.77282937459853	20.276	0.36785	19.897	19.709	20.076	-0.37949					15	6	3	0	0	0	0.54229	1	7088	7088		41.84	1.8899	1	20248000			24099	744	15211	15297	23171	23171					0.020588040149391418
PGRKGLFF	8	Unmodified	_PGRKGLFF_					0	0	0		ENST00000257527.8_2_5:156905371-156905707:-|nuORF	ENST00000257527.8_2_5:156905371-156905707:-|nuORF	ENST00000257527.8_2_5:156905371-156905707:-|nuORF	MSMS	HCT116MG_D190212_S3	3	461.27093505859375	2	461.268887	920.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.52	1	26.371	25.871	26.871	-0.14924								0	0	0	0.8837	1	9518	9518		2.8892	2.0956	1				24100	6826	15212	15298	23172	23172					0.05978116205187689
PGRKKSSDG	9	Unmodified	_PGRKKSSDG_					0	0	0			REV__CBX8|p.S315Afs*41|1|0.24|ENSG00000141570|chr17:79794863-79794863|G/-|frameshift_variant	REV__CBX8|p.S315Afs*41|1|0.24|ENSG00000141570|chr17:79794863-79794863|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	466.2500305175781	2	466.251423	930.488293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.945	1	59.945	59.445	60.445	0								0	0	0	0.76967	1	23101	23101		2.0598	0.57785	1		+		24101	10103	15213	15299	23173	23173					0.02026828606574327
PGRKRRRKHRE	11	Unmodified	_PGRKRRRKHRE_					0	0	0		CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant	CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	492.6349792480469	3	492.634536	1474.88178	0.37722	0.00018583	0.14962	7.3706E-05	0.52684	0.00025954	492.6345044920839	52.596	0.93297	52.596	51.861	52.794	0					53	17	4	0	0	0	0.74191	1	20130	20130		0.40827	0	1	134460000			24102	426;425	15214	15300	23174	23174					0.1633327783376899
PGRKRRRKHRE	11	Unmodified	_PGRKRRRKHRE_					0	0	0		CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant	CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	492.63427734375	3	492.634536	1474.88178	0.44862	0.000221	0.16515	8.136E-05	0.61377	0.00030236	492.6345306457638	53.84	2.6071	53.84	52.742	55.349	0					165	50	4	0	0	0	0.74191	1	20592	20592		0.40827	0	1	1040799999.9999999			24103	426;425	15214	15300	23175	23175					0.1633327783376899
PGRKRRRKHRE	11	Unmodified	_PGRKRRRKHRE_					0	0	0		CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.P246Lfs*49|1|0.33|ENSG00000170004|chr17:7893509-7893509|C/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;CHD3|p.E368Rfs*116|1|0.39|ENSG00000170004|chr17:7894438-7894438|G/-|frameshift_variant	CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant;CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	CHD3|p.L765*|1|0.31|ENSG00000170004|chr17:7899148-7899148|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	740.9266357421875	2	738.448166	1474.88178	0.9013	0.00066556	0.053541	3.9537E-05	0.95484	0.0007051	738.4481181912531	53.848	2.1963	53.848	53.153	55.349	0					169	42	5	0	0	0	0.74191	1	20662	20662		1.1933	0.88631	1	3168399999.9999995			24104	426;425	15214	15300	23176	23176					0.1633327783376899
PGRPAAQSQPP	11	Unmodified	_PGRPAAQSQPP_					0	0	0		ENST00000374313.5_1_9:114355204-114361983:-|nuORF	ENST00000374313.5_1_9:114355204-114361983:-|nuORF	ENST00000374313.5_1_9:114355204-114361983:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	555.1229858398438	2	553.291079	1104.56761	0.29429	0.00016283	0.2513	0.00013904	0.54559	0.00030187	553.2911333262828	20.55	1.4578	20.584	19.621	21.079	0.034473					82	27	5	0	0	0	0.70377	1	7164	7164		20.415	1.0526	1	144170000			24105	7494	15215	15301	23177	23177					0.019504755606931212
PGRQERDYRVW	11	Unmodified	_PGRQERDYRVW_					0	0	0			REV__ENST00000461084.5_1_3:47324437-47378284:+|nuORF	REV__ENST00000461084.5_1_3:47324437-47378284:+|nuORF	MSMS	HCT116MG_D190212_S4	4	731.370361328125	2	731.370924	1460.72729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.606	1	48.239	47.739	48.739	-0.36728								0	0	0	0.95925	1	18007	18007		1.4819	0	1		+		24106	11512	15216	15302	23178	23178					0.015359838378799395
PGRRGKAG	8	Unmodified	_PGRRGKAG_					0	0	0			REV__nc|ENSG00000196739|Q8IZC6-2|COL27A1	REV__nc|ENSG00000196739|Q8IZC6-2|COL27A1	MULTI-SECPEP	HCT116MG_D190212_S2	2	399.1861877441406	2	399.738286	797.462019	0.071226	2.8472E-05	-0.054099	-2.1625E-05	0.017127	6.8465E-06	399.73828934328753	40.968	0.72283	40.899	40.365	41.088	-0.069626					19	13	2	0	0	0	0.3238	1	15429	15429		2.5775	0	1	6710700	+		24107	10233	15217	15303	23179	23179					0.055186042257560075
PGRRGKAG	8	Unmodified	_PGRRGKAG_					0	0	0			REV__nc|ENSG00000196739|Q8IZC6-2|COL27A1	REV__nc|ENSG00000196739|Q8IZC6-2|COL27A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	399.738286	797.462019	0.085777	3.4288E-05	-0.025683	-1.0267E-05	0.060094	2.4022E-05	399.73820116418335	40.976	1.3316	40.674	39.665	40.997	-0.30185	-0.069234	4.2561E-05	NaN	2.5775	32	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5672900	+		24108	10233	15217	15303							0.055186042257560075
PGRRQRRRRQR	11	Unmodified	_PGRRQRRRRQR_					0	0	0		ENST00000394967.2_1_2:175202164-175202371:+|nuORF;SP9|p.K422Rfs*99|1|0.42|ENSG00000217236|chr2:174337346-174337346|A/-|frameshift_variant	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	507.3099060058594	3	507.977185	1520.90972	0.44216	0.00022461	2.7861	0.0014153	3.2283	0.0016399	507.97875327930336	52.7	0.25774	52.7	52.536	52.794	0					6	4	2	0	0	0	0.36629	1	20154	20154		0.40827	0.40827	1	15411000			24109	7640	15218	15304	23180	23180					0.17010600813841847
PGRRRQQPP	9	Unmodified	_PGRRRQQPP_					0	0	0		ENST00000543587.5_3_11:71822512-71823788:-|nuORF	ENST00000543587.5_3_11:71822512-71823788:-|nuORF	ENST00000543587.5_3_11:71822512-71823788:-|nuORF	MSMS	HCT116MG_D190212_S3	3	546.3135986328125	2	546.312681	1090.61081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.941	1	39.639	39.139	40.139	-0.30137								0	0	0	0.7696	1	14812	14812		2.3027	0.4585	1				24110	8705	15219	15305	23181	23181					0.06912710128653998
PGRRRQQPP	9	Unmodified	_PGRRRQQPP_					0	0	0		ENST00000543587.5_3_11:71822512-71823788:-|nuORF	ENST00000543587.5_3_11:71822512-71823788:-|nuORF	ENST00000543587.5_3_11:71822512-71823788:-|nuORF	MSMS	HCT116MG_D190212_S4	4	546.3139038085938	2	546.312681	1090.61081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.984	1	39.605	39.105	40.105	-0.37936								0	0	0	0.7696	1	14654	14654		2.3027	0.4585	1				24111	8705	15219	15305	23182	23182					0.06912710128653998
PGRRRRRKRRR	11	Unmodified	_PGRRRRRKRRR_					0	0	0		ENST00000511943.5_1_4:77987554-77996677:-|nuORF	ENST00000511943.5_1_4:77987554-77996677:-|nuORF	ENST00000511943.5_1_4:77987554-77996677:-|nuORF	MSMS	HCT116MG_D190212_S1	1	775.50341796875	2	775.501598	1548.98864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.458	1	34.458	33.958	34.958	0								0	0	0	0.95954	1	12786	12786		1.3295	1.3295	1				24112	8504	15220	15306	23183	23183					0.2361087283877623
PGRSGLVPQ	9	Unmodified	_PGRSGLVPQ_					0	0	0			REV__ENST00000272462.2_1_2:110842286-110842496:-|nuORF	REV__ENST00000272462.2_1_2:110842286-110842496:-|nuORF	MSMS	HCT116MG_D190212_S4	4	455.7586975097656	2	455.758884	909.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.408	1	31.038	30.538	31.538	-0.37026								0	0	0	0.62451	1	11398	11398		22.736	1.8651	1		+		24113	14699	15221	15307	23184	23184					0.04484320474557535
PGRSPEPDGP	10	Unmodified	_PGRSPEPDGP_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B;CEP170B|p.H885Tfs*28|2|0.25|ENSG00000099814|chr14:104886886-104886886|C/-|frameshift_variant	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MSMS	HCT116MG_D190212_S4	4	504.74041748046875	2	504.740888	1007.46722	0.18189	9.1809E-05	-0.49949	-0.00025212	-0.3176	-0.00016031	504.74083164919483	18.718	0.57191	18.537	18.199	18.771	-0.18052					13	10	2	0	0	0	0.69918	1	6331	6331		20.454	0.039092	1	1189300			24114	1642	15222	15308	23185	23185					-0.03621181492951564
PGRTRKAGGPR	11	Unmodified	_PGRTRKAGGPR_					0	0	0			REV__ENST00000267859.7_1_15:59974682-59981518:-|nuORF	REV__ENST00000267859.7_1_15:59974682-59981518:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	384.23388671875	3	384.895134	1151.66357	-0.1296	-4.9884E-05	3.2317	0.0012439	3.1021	0.001194	384.8958540721416	21.854	0.26076	21.854	21.75	22.011	0					5	4	2	0	0	0	0.35977	1	7756	7756		6.6235	2.2173	1	1500100	+		24115	14683	15223	15309	23186	23186					0.09380668191465702
PGRTRKAGGPR	11	Unmodified	_PGRTRKAGGPR_					0	0	0			REV__ENST00000267859.7_1_15:59974682-59981518:-|nuORF	REV__ENST00000267859.7_1_15:59974682-59981518:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	384.895134	1151.66357	0.054535	2.099E-05	2.0703	0.00079684	2.1248	0.00081783	384.8959807132213	22.543	0.31136	22.158	22.051	22.362	-0.3852	0.15187	-6.344E-05	NaN	6.6235	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7409200	+		24116	14683	15223	15309							0.09380668191465702
PGRTSRWRRL	10	Unmodified	_PGRTSRWRRL_					0	0	0		ENST00000259873.4_1_6:30585595-30585661:+|nuORF	ENST00000259873.4_1_6:30585595-30585661:+|nuORF	ENST00000259873.4_1_6:30585595-30585661:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.91805	1283.73232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.914	1	15.75	15.25	16.25	-0.16364								0	0	0	0.96769	1	5168	5168		0.77653	0	1				24117	6837	15224	15310	23187	23187					0.10180332491177069
PGRVGWIT	8	Unmodified	_PGRVGWIT_					0	0	0		ENST00000278968.10_3_11:117070126-117070369:+|nuORF	ENST00000278968.10_3_11:117070126-117070369:+|nuORF	ENST00000278968.10_3_11:117070126-117070369:+|nuORF	MSMS	HCT116MG_D190212_S4	4	443.25048828125	2	443.250695	884.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.539	1	34.154	33.654	34.654	-0.38558								0	0	0	0.8837	1	12616	12616		14.582	0	1				24118	6936	15225	15311	23188	23188					0.0399723930846676
PGSAERAPA	9	Unmodified	_PGSAERAPA_					0	0	0			REV__ENST00000265827.7_1_7:127031641-127032559:-|nuORF	REV__ENST00000265827.7_1_7:127031641-127032559:-|nuORF	MSMS	HCT116MG_D190212_S4	4	428.21954345703125	2	428.219591	854.42463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.336	1	16.172	15.672	16.672	-0.16364								0	0	0	0.76781	1	5339	5339		8.5933	0.68312	1		+		24119	14676	15226	15312	23189	23189					-0.00840531830533564
PGSAGPQAGP	10	Unmodified	_PGSAGPQAGP_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	HCT116MG_D190212_S3	3	419.7064208984375	2	419.706317	837.398081	0.055476	2.3284E-05	-0.10501	-4.4075E-05	-0.049538	-2.0792E-05	419.7061931943038	19.261	1.093	19.321	18.449	19.542	0.05983					24	20	2	0	0	0	0.61891	1	6495	6495		26.884	3.7352	1	3378300			24120	800	15227	15313	23190	23190					-0.02712220721855374
PGSAGPQAGP	10	Unmodified	_PGSAGPQAGP_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	HCT116MG_D190212_S3	3	838.4070434570312	1	838.405357	837.398081	0.7061	0.000592	0.10579	8.8691E-05	0.81189	0.00068069	838.4055378363288	19.65	1.1453	19.71	18.918	20.063	0.059828					33	21	2	0	0	0	0.047039	1	6835	6835		89.401	4.8785	1	2783900			24121	800	15227	15313	23191	23191					-0.02712220721855374
PGSAGPQAGP	10	Unmodified	_PGSAGPQAGP_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MSMS	HCT116MG_D190212_S4	4	419.7064514160156	2	419.706317	837.398081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.843	1	19.649	19.149	20.149	-0.19367								0	0	0	0.096493	1	6756	6756		83.429	1.5385	1				24122	800	15227	15313	23192	23192					-0.02712220721855374
PGSAGPQAGPT	11	Unmodified	_PGSAGPQAGPT_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MSMS	HCT116MG_D190212_S4	4	470.2301940917969	2	470.230156	938.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.678	1	22.441	21.941	22.941	-0.23758								0	0	0	0.49457	1	7902	7902		47.749	11.622	1				24123	800	15228	15314	23193	23193					-0.025925665216618654
PGSAGPQAGPT	11	Unmodified	_PGSAGPQAGPT_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MSMS	HCT116MG_D190212_S4	4	470.2303771972656	2	470.230156	938.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.09	1	24.81	24.31	25.31	-0.27958								0	0	0	0.81249	1	8874	8874		31.268	8.5321	1				24124	800	15228	15314	23194	23194					-0.025925665216618654
PGSALCPYLH	10	Unmodified	_PGSALCPYLH_					0	0	0		ENST00000500447.1_1_11:567036-567441:-|nuORF	ENST00000500447.1_1_11:567036-567441:-|nuORF	ENST00000500447.1_1_11:567036-567441:-|nuORF	MSMS	HCT116MG_D190212_S4	4	529.2612915039062	2	529.260402	1056.50625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.391	1	24.123	23.623	24.623	-0.26881								0	0	0	0.90475	1	8591	8591		14.838	1.7958	1				24125	8421	15229	15315	23195	23195					-0.019741724629511737
PGSAMFFAWRY	11	Unmodified	_PGSAMFFAWRY_					0	0	0			REV__nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	REV__nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	MULTI-MSMS	HCT116MG_D190212_S3	3	666.8119506835938	2	666.813333	1331.61211	0.65486	0.00043667	-0.89494	-0.00059676	-0.24008	-0.00016009	666.8122625823812	20.721	1.2493	20.756	19.985	21.235	0.034473					35	23	3	0	0	0	0.74191	1	7088	7088		6.2058	0.9089	1	5051100	+		24126	11917	15230	15316	23196	23196					-0.04042836617441026
PGSAMFFAWRY	11	Unmodified	_PGSAMFFAWRY_					0	0	0			REV__nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	REV__nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	MULTI-MSMS	HCT116MG_D190212_S4	4	666.8128662109375	2	666.813333	1331.61211	0.67673	0.00045125	-1.1104	-0.00074046	-0.43371	-0.0002892	666.8125198912095	20.797	1.2467	20.587	19.876	21.123	-0.20959					38	23	3	0	0	0	0.57532	2	7185	6939;7185		38.176	11.907	1	4039400	+		24127	11917	15230	15316	23197;23198	23198					-0.04042836617441026
PGSAMFFAWRY	11	Unmodified	_PGSAMFFAWRY_					0	0	0			REV__nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	REV__nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	MULTI-SECPEP	HCT116MG_D190212_S4	4	667.1757202148438	2	666.813333	1331.61211	0.67673	0.00045125	-1.1104	-0.00074046	-0.43371	-0.0002892	666.8125198912095	20.797	1.2467	20.587	19.876	21.123	-0.20959					38	23	3	0	0	0	0.36334	1	6979	6979		3.2813	0.28607	1	4039400	+		24128	11917	15230	15316	23199	23199					-0.04042836617441026
PGSAPGAA	8	Unmodified	_PGSAPGAA_					0	0	0			REV__ENST00000494080.5_1_11:64109984-64120281:+|nuORF	REV__ENST00000494080.5_1_11:64109984-64120281:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	627.697509765625	1	627.309666	626.30239	0.14915	9.3562E-05	0.33135	0.00020786	0.48049	0.00030142	627.309797706524	17.443	0.83257	17.524	17.221	18.054	0.081358					25	15	2	0	0	0	0.19769	1	6060	6060		46.921	0	1	4458500	+		24129	15802	15231	15317	23200	23200					-0.02570948842094367
PGSAQSPK	8	Unmodified	_PGSAQSPK_					0	0	0			REV__ENSG00000184163|ENST00000330388|C1QTNF12	REV__ENSG00000184163|ENST00000330388|C1QTNF12	MSMS	HCT116MG_D190212_S4	4	386.2016296386719	2	386.20341	770.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.99	1	29.633	29.133	30.133	-0.3571								0	0	0	0.8837	1	10853	10853		9.3474	3.587	1		+		24130	13787	15232	15318	23201	23201					-0.002113192335173153
PGSAWHAPRGP	11	Unmodified	_PGSAWHAPRGP_					0	0	0			REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF	REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.2881469726562	2	566.785964	1131.55738	0.38143	0.00021619	-0.14199	-8.048E-05	0.23944	0.00013571	567.2877981516841	26.716	0.36382	26.415	26.13	26.493	-0.30087					9	6	2	0	0	0	0.70991	1	9490	9490		18.146	3.3081	1	6379900	+		24131	13816	15233	15319	23202	23202					-0.0031408737386300345
PGSCGRRRPGP	11	Unmodified	_PGSCGRRRPGP_					0	0	0			REV__ENST00000494222.5_1_10:124134272-124152763:+|nuORF	REV__ENST00000494222.5_1_10:124134272-124152763:+|nuORF	MSMS	HCT116MG_D190212_S2	2	570.2944946289062	2	570.296173	1138.57779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.75	1	16.408	15.908	16.908	-0.34183								0	0	0	0.92983	1	5657	5657		16.149	0.90062	1		+		24132	16071	15234	15320	23203	23203					0.014047600142930605
PGSCNPQQK	9	Unmodified	_PGSCNPQQK_					0	0	0			REV__ENST00000492782.5_1_7:50437257-50437431:+|nuORF	REV__ENST00000492782.5_1_7:50437257-50437431:+|nuORF	MSMS	HCT116MG_D190212_S3	3	479.7234191894531	2	479.724184	957.433814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.229	1	15.313	14.813	15.813	0.083271								0	0	0	0.768	1	4967	4967		7.9102	1.187	1		+		24133	16057	15235	15321	23204	23204					-0.04660506536504272
PGSCPSGGNQP	11	Unmodified	_PGSCPSGGNQP_					0	0	0			REV__ENSG00000021852|ENST00000371237|C8B	REV__ENSG00000021852|ENST00000371237|C8B	MULTI-MSMS	HCT116MG_D190212_S4	4	500.7110595703125	2	500.711273	999.407994	0.049966	2.5018E-05	0.051412	2.5743E-05	0.10138	5.0761E-05	500.71125734823903	17.458	0.36359	17.287	17.069	17.433	-0.17046					10	6	2	0	0	0	0.73364	1	5807	5807		9.3831	0.78985	1	1545400	+		24134	10554	15236	15322	23205	23205					-0.09173400778786345
PGSCTHRTCHR	11	Unmodified	_PGSCTHRTCHR_					0	0	0			REV__ENST00000584574.5_3_17:61904600-61904903:-|nuORF	REV__ENST00000584574.5_3_17:61904600-61904903:-|nuORF	MSMS	HCT116MG_D190212_S4	4	627.4866943359375	2	627.782573	1253.55059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.154	1	15.99	15.49	16.49	-0.16364								0	0	0	0.95581	1	5266	5266		3.2813	0	1		+		24135	16645	15237	15323	23206	23206					-0.06604091588405936
PGSDARPA	8	Unmodified	_PGSDARPA_					0	0	0			REV__PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant	REV__PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	770.3807983398438	1	770.379143	769.371866	0.51499	0.00039674	0.78179	0.00060228	1.2968	0.00099902	770.3800618542871	22.836	0.30015	22.817	22.647	22.948	-0.018869					7	5	2	0	0	0	0.6854	1	8071	8071		24.674	8.8267	1	2877900	+		24136	12029	15238	15324	23207	23207					-0.022044898933359036
PGSDARPA	8	Unmodified	_PGSDARPA_					0	0	0			REV__PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant	REV__PDZD2|p.E2629Kfs*37|1|0.23|ENSG00000133401|chr5:32097314-32097314|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	770.3794555664062	1	770.379143	769.371866	1.0331	0.00079589	-0.16221	-0.00012496	0.87091	0.00067093	770.3789616879242	25.108	1.299	24.828	24.123	25.422	-0.27958					28	24	2	0	0	0	0.71835	1	8854	8854		20.871	0.41758	1	3376300	+		24137	12029	15238	15324	23208	23208					-0.022044898933359036
PGSDRDTAF	9	Unmodified	_PGSDRDTAF_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MSMS	HCT116MG_D190212_S3	3	483.2198486328125	2	483.219788	964.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.632	1	16.717	16.217	17.217	0.085424								0	0	0	0.53872	1	5533	5533		26.884	6.43	1		+		24138	10335	15239	15325	23209	23209					-0.058611569013237386
PGSDYFPGGT	10	Unmodified	_PGSDYFPGGT_					0	0	0		ENSG00000169184|ENST00000302326|MN1;MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant	ENSG00000169184|ENST00000302326|MN1	ENSG00000169184|ENST00000302326|MN1	MSMS	HCT116MG_D190212_S3	3	499.21466064453125	2	499.216714	996.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.425	1	18.502	18.002	19.002	0.076334								0	0	0	0.86471	1	6256	6256		20.454	2.3186	1				24139	5053	15240	15326	23210	23210					-0.07947675132845688
PGSENELHLAE	11	Unmodified	_PGSENELHLAE_					0	0	0		CDON|p.S875Rfs*8|1|0.36|ENSG00000064309|chr11:125994309-125994309|A/-|frameshift_variant;ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON	CDON|p.S875Rfs*8|1|0.36|ENSG00000064309|chr11:125994309-125994309|A/-|frameshift_variant	CDON|p.S875Rfs*8|1|0.36|ENSG00000064309|chr11:125994309-125994309|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	598.8176879882812	2	598.283117	1194.55168	0.90378	0.00054071	-2.6391	-0.0015789	-1.7353	-0.0010382	598.2817534181048	17.905	0.36363	17.73	17.428	17.792	-0.17501					10	6	2	0	0	0	0.33998	1	5885	5885		21.537	4.0943	1	571760			24140	396	15241	15327	23211	23211					-0.03781275466849365
PGSEQKRLP	9	Unmodified	_PGSEQKRLP_					0	0	0		ENST00000438017.5_1_3:42695550-42695823:-|nuORF	ENST00000438017.5_1_3:42695550-42695823:-|nuORF	ENST00000438017.5_1_3:42695550-42695823:-|nuORF	MSMS	HCT116MG_D190212_S4	4	506.2805480957031	2	506.282723	1010.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.548	1	29.199	28.699	29.699	-0.34921								0	0	0	0.76641	1	10675	10675		13.508	0.97634	1				24141	7892	15242	15328	23212	23212					0.04603974674762412
PGSESLDRI	9	Unmodified	_PGSESLDRI_					0	0	0		nc|ENSG00000286135|A0A494C103|SPADH	nc|ENSG00000286135|A0A494C103|SPADH	nc|ENSG00000286135|A0A494C103|SPADH	MSMS	HCT116MG_D190212_S3	3	487.25164794921875	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.381	1	25.275	24.775	25.775	-0.10618								0	0	0	0.74436	1	9059	9059		16.942	1.0951	1				24142	9672	15243	15329	23213	23213					0.0002798916684696451
PGSGARWPQ	9	Unmodified	_PGSGARWPQ_					0	0	0		ENST00000359236.9_1_12:118541400-118541646:-|nuORF	ENST00000359236.9_1_12:118541400-118541646:-|nuORF	ENST00000359236.9_1_12:118541400-118541646:-|nuORF	MSMS	HCT116MG_D190212_S4	4	478.2396240234375	2	478.240858	954.467164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.022	1	27.697	27.197	28.197	-0.32479								0	0	0	0.76575	1	10058	10058		15.847	2.3393	1				24143	7333	15244	15330	23214	23214					-0.011891367022940358
PGSGASRQYSP	11	Unmodified	_PGSGASRQYSP_					0	0	0			REV__ENST00000437322.2_1_X:49642981-49643347:-|nuORF	REV__ENST00000437322.2_1_X:49642981-49643347:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	369.51214599609375	3	369.512355	1105.51524	-0.21803	-8.0563E-05	0.34713	0.00012827	0.1291	4.7705E-05	369.5124611708147	21.122	0.20813	21.157	21.027	21.235	0.034473					5	3	2	0	0	0	0.73364	1	7372	7372		10.899	3.4219	1	5097900	+		24144	15631	15245	15331	23215	23215					-0.03330107572924135
PGSGFLPQP	9	Unmodified	_PGSGFLPQP_					0	0	0		ENST00000310032.12_1_5:176085174-176085396:+|nuORF	ENST00000310032.12_1_5:176085174-176085396:+|nuORF	ENST00000310032.12_1_5:176085174-176085396:+|nuORF	MSMS	HCT116MG_D190212_S3	3	450.23321533203125	2	450.23471	898.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.476	1	25.37	24.87	25.87	-0.10618								0	0	0	0.76718	1	9097	9097		10.824	1.4765	1				24145	7048	15246	15332	23216	23216					0.001578268346634104
PGSGNTYPK	9	Unmodified	_PGSGNTYPK_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	HCT116MG_D190212_S4	4	920.4479370117188	1	920.447222	919.439946	0.71614	0.00065917	-0.28986	-0.0002668	0.42628	0.00039237	920.4466067779118	19.306	0.46797	19.12	18.817	19.285	-0.18674					14	8	2	0	0	0	0.43775	1	6523	6523		20.454	3.5113	1	1320800			24146	2170	15247	15333	23217	23217					-0.022996650333311663
PGSGPGAPK	9	Unmodified	_PGSGPGAPK_					0	0	0		ENST00000333602.10_1_3:195635470-195635845:-|nuORF	ENST00000333602.10_1_3:195635470-195635845:-|nuORF	ENST00000333602.10_1_3:195635470-195635845:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	384.2058410644531	2	384.205953	766.397353	-0.078675	-3.0227E-05	0.26247	0.00010084	0.1838	7.0615E-05	384.20585936760205	15.197	0.26101	15.197	15.066	15.327	0					7	4	2	0	0	0	0.45867	1	5065	5065		19.257	1.1106	1	2138200			24147	7177	15248	15334	23218	23218					0.004809846290982023
PGSGPGPGGDP	11	Unmodified	_PGSGPGPGGDP_					0	0	0			REV__GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	REV__GRID2IP|p.P751Hfs*78|1|0.38|ENSG00000215045|chr7:6508277-6508277|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	447.7017822265625	2	447.701232	893.38791	0.18289	8.1881E-05	-0.081611	-3.6537E-05	0.10128	4.5344E-05	447.7011392686428	23.434	1.7203	23.186	22.123	23.844	-0.24775					58	32	2	0	0	0	0.74191	1	7901	7901		5.2969	0	1	5983700	+		24148	14279	15249	15335	23219	23219					-0.06304828447093769
PGSGPGPS	8	Unmodified	_PGSGPGPS_					0	0	0			REV__SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant	REV__SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	655.3051147460938	1	655.304581	654.297304	0.74843	0.00049045	0.39267	0.00025732	1.1411	0.00074776	655.3046784442614	25.104	0.57211	24.824	24.642	25.214	-0.27958					16	10	2	0	0	0	0.64404	1	8910	8910		28.487	0	1	2589200	+		24149	17514	15250	15336	23220	23220					-0.04367252704719249
PGSGRFAAET	10	Unmodified	_PGSGRFAAET_					0	0	0		ENST00000356810.5_1_20:62289730-62290707:+|nuORF	ENST00000356810.5_1_20:62289730-62290707:+|nuORF	ENST00000356810.5_1_20:62289730-62290707:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	496.74371337890625	2	496.743431	991.472308	0.36608	0.00018185	0.13856	6.8828E-05	0.50464	0.00025067	496.7435591386393	22.517	0.83333	22.287	21.829	22.662	-0.23091					23	15	2	0	0	0	0.19283	1	7897	7897		60.074	4.5712	1	4693800			24150	7302	15251	15337	23221	23221					-0.023768776303313643
PGSGYPGA	8	Unmodified	_PGSGYPGA_					0	0	0		RARG|p.A32Gfs*14|1|0.24|ENSG00000172819|chr12:53227451-53227452|-/C|frameshift_variant;RARG|p.P281Qfs*6|1|0.29|ENSG00000172819|chr12:53213672-53213672|G/-|frameshift_variant;ENSG00000172819|ENST00000425354|RARG	RARG|p.A32Gfs*14|1|0.24|ENSG00000172819|chr12:53227451-53227452|-/C|frameshift_variant	RARG|p.A32Gfs*14|1|0.24|ENSG00000172819|chr12:53227451-53227452|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	705.3206176757812	1	705.320231	704.312954	0.97218	0.0006857	0.18366	0.00012954	1.1558	0.00081524	705.3201012896578	29.81	0.92806	29.509	28.929	29.857	-0.30095					29	17	2	0	0	0	0.40466	1	10854	10854		49.669	6.7009	1	18463000			24151	5263	15252	15338	23222	23222					-0.0510296618766688
PGSGYPGA	8	Unmodified	_PGSGYPGA_					0	0	0		RARG|p.A32Gfs*14|1|0.24|ENSG00000172819|chr12:53227451-53227452|-/C|frameshift_variant;RARG|p.P281Qfs*6|1|0.29|ENSG00000172819|chr12:53213672-53213672|G/-|frameshift_variant;ENSG00000172819|ENST00000425354|RARG	RARG|p.A32Gfs*14|1|0.24|ENSG00000172819|chr12:53227451-53227452|-/C|frameshift_variant	RARG|p.A32Gfs*14|1|0.24|ENSG00000172819|chr12:53227451-53227452|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	705.32080078125	1	705.320231	704.312954	0.88164	0.00062184	-0.093289	-6.5799E-05	0.78835	0.00055604	705.3199732075436	29.923	1.8842	29.686	28.146	30.03	-0.23655					65	35	3	0	0	0	0.19251	2	10680	10680;10912		75.128	14.738	1	26561000			24152	5263	15252	15338	23223;23224	23223					-0.0510296618766688
PGSGYPGA	8	Unmodified	_PGSGYPGA_					0	0	0		RARG|p.A32Gfs*14|1|0.24|ENSG00000172819|chr12:53227451-53227452|-/C|frameshift_variant;RARG|p.P281Qfs*6|1|0.29|ENSG00000172819|chr12:53213672-53213672|G/-|frameshift_variant;ENSG00000172819|ENST00000425354|RARG	RARG|p.A32Gfs*14|1|0.24|ENSG00000172819|chr12:53227451-53227452|-/C|frameshift_variant	RARG|p.A32Gfs*14|1|0.24|ENSG00000172819|chr12:53227451-53227452|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	705.9988403320312	1	705.320231	704.312954	0.72322	0.0005101	0.15205	0.00010724	0.87527	0.00061734	705.3201280486919	29.927	1.7145	29.57	28.246	29.961	-0.3571					66	32	3	0	0	0	0.21411	3	10721	10624;10721;10850		70.865	11.069	1	23546000			24153	5263	15252	15338	23225;23226;23227	23226					-0.0510296618766688
PGSHGPMQP	9	Unmodified	_PGSHGPMQP_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MSMS	HCT116MG_D190212_S4	4	454.20733642578125	2	454.20817	906.401786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.503	1	29.154	28.654	29.654	-0.34921								0	0	0	0.76694	1	10657	10657		11.64	1.4569	1		+		24154	12857	15253	15339	23228	23228					-0.055158742196454114
PGSHRTEQT	9	Unmodified	_PGSHRTEQT_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-SECPEP	HCT116MG_D190212_S2	2	506.2412414550781	2	506.743962	1011.47337	0.33412	0.00016931	1.3308	0.0006744	1.665	0.00084371	506.7439824057326	21.585	0.93652	21.199	20.959	21.896	-0.38503					23	17	3	0	0	0	0.23301	1	7722	7722		15.847	1.0089	1	8525200			24155	1050	15254	15340	23229	23229					-0.031906632614322916
PGSIGPGSA	9	Unmodified	_PGSIGPGSA_					0	0	0			REV__ENST00000409178.5_1_10:75670551-75671139:-|nuORF	REV__ENST00000409178.5_1_10:75670551-75671139:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	742.3735961914062	1	742.372995	741.365718	0.35904	0.00026654	0.41337	0.00030687	0.77241	0.00057342	742.3730969042672	20.289	0.46858	20.337	20.207	20.676	0.048107					11	8	2	0	0	0	0.057285	1	7009	7009		71.134	0	1	8824200	+		24156	15431	15255	15341	23230	23230					-0.015310081248458118
PGSIGPGSA	9	Unmodified	_PGSIGPGSA_					0	0	0			REV__ENST00000409178.5_1_10:75670551-75671139:-|nuORF	REV__ENST00000409178.5_1_10:75670551-75671139:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	742.3736572265625	1	742.372995	741.365718	0.86018	0.00063858	0.08705	6.4623E-05	0.94723	0.0007032	742.3730349039885	20.523	0.46791	20.322	20.092	20.56	-0.20133					16	8	3	0	0	0	0.035914	1	7017	7017		81.613	6.6841	1	5797400	+		24157	15431	15255	15341	23231	23231					-0.015310081248458118
PGSIGPGSA	9	Unmodified	_PGSIGPGSA_					0	0	0			REV__ENST00000409178.5_1_10:75670551-75671139:-|nuORF	REV__ENST00000409178.5_1_10:75670551-75671139:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	742.372995	741.365718	0.35904	0.00026654	0.41337	0.00030687	0.77241	0.00057342	742.3730969042672	20.289	0.46858	20.337	20.207	20.676	0.048107	0.0079294	0.00018983	NaN	81.613	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8824200	+		24158	15431	15255	15341							-0.015310081248458118
PGSIGPGSA	9	Unmodified	_PGSIGPGSA_					0	0	0			REV__ENST00000409178.5_1_10:75670551-75671139:-|nuORF	REV__ENST00000409178.5_1_10:75670551-75671139:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	742.372995	741.365718	0.86018	0.00063858	0.08705	6.4623E-05	0.94723	0.0007032	742.3730349039885	20.523	0.46791	20.322	20.092	20.56	-0.20133	-0.0079294	-5.2422E-05	NaN	81.613	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5797400	+		24159	15431	15255	15341							-0.015310081248458118
PGSIGPVGRSP	11	Unmodified	_PGSIGPVGRSP_					0	0	0			REV__ENST00000413209.6_1_22:29999638-29999929:+|nuORF	REV__ENST00000413209.6_1_22:29999638-29999929:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2822265625	2	512.282723	1022.55089	0.28462	0.00014581	-0.17865	-9.1517E-05	0.10598	5.429E-05	512.28229822094	25.422	0.83324	25.316	24.891	25.724	-0.10618					29	15	3	0	0	0	0.71271	1	9106	9106		17.113	0.1706	1	5196000	+		24160	15454	15256	15342	23232	23232					0.04051974674769099
PGSIPAPPAP	10	Unmodified	_PGSIPAPPAP_					0	0	0		nc|ENSG00000165124|Q4LDE5-2|SVEP1;SVEP1|p.T1060Ffs*10|1|0.12|ENSG00000165124|chr9:110466009-110466010|-/TATCAAA|frameshift_variant;nc|ENSG00000165124|Q4LDE5-4|SVEP1;SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1	nc|ENSG00000165124|Q4LDE5-2|SVEP1	nc|ENSG00000165124|Q4LDE5-2|SVEP1	MSMS	HCT116MG_D190212_S3	3	452.2504577636719	2	452.25036	902.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.57	1	25.453	24.953	25.953	-0.11721								0	0	0	0.81484	1	9135	9135		26.884	3.7352	1				24161	4751	15257	15343	23233	23233					0.03102399868748762
PGSIPAPPAP	10	Unmodified	_PGSIPAPPAP_					0	0	0		nc|ENSG00000165124|Q4LDE5-2|SVEP1;SVEP1|p.T1060Ffs*10|1|0.12|ENSG00000165124|chr9:110466009-110466010|-/TATCAAA|frameshift_variant;nc|ENSG00000165124|Q4LDE5-4|SVEP1;SVEP1|p.Y3375Mfs*48|1|0.3|ENSG00000165124|chr9:110386012-110386012|A/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1	nc|ENSG00000165124|Q4LDE5-2|SVEP1	nc|ENSG00000165124|Q4LDE5-2|SVEP1	MSMS	HCT116MG_D190212_S4	4	452.2503356933594	2	452.25036	902.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.764	1	25.473	24.973	25.973	-0.29022								0	0	0	0.90475	1	9146	9146		14.838	3.198	1				24162	4751	15257	15343	23234	23234					0.03102399868748762
PGSKDLSSKEF	11	Unmodified	_PGSKDLSSKEF_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000543961.1_1_12:25956587-25956887:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MSMS	HCT116MG_D190212_S2	2	597.7972412109375	2	597.803685	1193.59282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.477	1	23.093	22.593	23.593	-0.38412								0	0	0	0.9465	1	8369	8369		8.1555	0	1				24163	3626	15258	15344	23235	23235					0.003764855726103633
PGSKQSPP	8	Unmodified	_PGSKQSPP_					0	0	0		FBF1|p.Q409Pfs*38|1|0.36|ENSG00000188878|chr17:75923342-75923343|-/G|frameshift_variant;nc|ENSG00000188878|Q8TES7-4|FBF1;nc|ENSG00000188878|Q8TES7-3|FBF1;ENST00000585990.5_1_17:73916156-73934230:-|nuORF;nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1	FBF1|p.Q409Pfs*38|1|0.36|ENSG00000188878|chr17:75923342-75923343|-/G|frameshift_variant	FBF1|p.Q409Pfs*38|1|0.36|ENSG00000188878|chr17:75923342-75923343|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	797.4157104492188	1	797.415194	796.407917	0.81655	0.00065113	0.19392	0.00015464	1.0105	0.00080577	797.4152661680081	24.919	0.62487	24.835	24.393	25.018	-0.083694					14	11	2	0	0	0	0.69862	1	8871	8871		23.148	0	1	1853500			24164	6006	15259	15345	23236	23236					0.0015696728352168066
PGSLDLPELQP	11	Unmodified	_PGSLDLPELQP_					0	0	0		ENSG00000154144|ENST00000441174|TBRG1;ENST00000491010.2_1_11:124501900-124502131:+|nuORF;nc|ENSG00000154144|Q3YBR2-3|TBRG1;ENST00000438907.3_1_11:124496635-124502131:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1	ENSG00000154144|ENST00000441174|TBRG1;nc|ENSG00000154144|Q3YBR2-2|TBRG1	ENSG00000154144|ENST00000441174|TBRG1	MSMS	HCT116MG_D190212_S3	3	583.3079223632812	2	583.308603	1164.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.155	1	20.203	19.703	20.703	0.048107								0	0	0	0.94012	1	6954	6954		11.495	2.7493	1				24165	4210;9505	15260	15346	23237	23237					0.02693673577982736
PGSLGHRSHPA	11	Unmodified	_PGSLGHRSHPA_					0	0	0		ENST00000309976.13_1_18:11897346-11908343:-|nuORF;ENST00000588072.5_1_18:11906296-11908403:-|nuORF	ENST00000309976.13_1_18:11897346-11908343:-|nuORF	ENST00000309976.13_1_18:11897346-11908343:-|nuORF	MSMS	HCT116MG_D190212_S3	3	558.2889404296875	2	558.288871	1114.56319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.585	1	21.603	21.103	22.103	0.018446								0	0	0	0.94416	1	7529	7529		9.3831	0.63772	1				24166	7044	15261	15347	23238	23238					0.010490111377976064
PGSLSIRGFWR	11	Unmodified	_PGSLSIRGFWR_					0	0	0		ENST00000601807.5_2_19:49952902-49954779:-|nuORF	ENST00000601807.5_2_19:49952902-49954779:-|nuORF	ENST00000601807.5_2_19:49952902-49954779:-|nuORF	MSMS	HCT116MG_D190212_S4	4	638.3500366210938	2	638.351471	1274.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.248	1	26.937	26.437	27.437	-0.3114								0	0	0	0.95023	1	9745	9745		6.2058	0.47393	1				24167	9091	15262	15348	23239	23239					0.06203303274173777
PGSNENSTQ	9	Unmodified	_PGSNENSTQ_					0	0	0		ENST00000589695.1_1_6:41243865-41248907:-|nuORF;ENST00000589882.1_1_6:41248622-41249060:-|nuORF;nc|ENSG00000124731|Q9NP99-3|TREM1;ENSG00000124731|ENST00000244709|TREM1	ENST00000589695.1_1_6:41243865-41248907:-|nuORF	ENST00000589695.1_1_6:41243865-41248907:-|nuORF	MSMS	HCT116MG_D190212_S1	1	467.1348571777344	2	467.199053	932.383553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.087	1	26.087	25.587	26.587	0								0	0	0	0.76818	1	9411	9411		7.2892	0.93513	1				24168	2859	15263	15349	23240	23240					-0.08534337660648816
PGSPGAGAGAP	11	Unmodified	_PGSPGAGAGAP_					0	0	0		ENST00000605085.1_1_1:154934472-154934742:+|nuORF	ENST00000605085.1_1_1:154934472-154934742:+|nuORF	ENST00000605085.1_1_1:154934472-154934742:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	419.7063903808594	2	419.706317	837.398081	0.052725	2.2129E-05	-0.23449	-9.8415E-05	-0.18176	-7.6286E-05	419.70614902475086	19.809	0.67722	19.869	19.542	20.219	0.05983					18	12	2	0	0	0	0.10204	1	6773	6773		88.954	29.585	1	4169300			24169	9107	15264	15350	23241	23241					-0.02712220721855374
PGSPGAGAGAP	11	Unmodified	_PGSPGAGAGAP_					0	0	0		ENST00000605085.1_1_1:154934472-154934742:+|nuORF	ENST00000605085.1_1_1:154934472-154934742:+|nuORF	ENST00000605085.1_1_1:154934472-154934742:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	419.70648193359375	2	419.706317	837.398081	0.12367	5.1904E-05	-0.096688	-4.0581E-05	0.026978	1.1323E-05	419.7061993917696	19.199	1.0917	19.012	18.401	19.493	-0.18674					26	20	2	0	0	0	0.27854	1	6513	6513		66.457	6.0671	1	2143700			24170	9107	15264	15350	23242	23242					-0.02712220721855374
PGSPGAPGPQG	11	Unmodified	_PGSPGAPGPQG_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MSMS	HCT116MG_D190212_S3	3	461.22467041015625	2	461.224874	920.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.591	1	24.507	24.007	25.007	-0.083694								0	0	0	0.8787	1	8740	8740		22.736	2.3217	1				24171	1421	15265	15351	23243	23243					-0.02820549176090026
PGSPGAPGRP	10	Unmodified	_PGSPGAPGRP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S1	1	446.73541259765625	2	446.735409	891.456264	0.18944	8.4628E-05	-0.081669	-3.6484E-05	0.10777	4.8144E-05	446.73526022322636	17.983	0.67759	17.983	17.516	18.193	0					20	12	3	0	0	0	0.76634	1	6021	6021		14.838	1.7958	1	6261600	+		24172	13018	15266	15352	23244	23244					0.006194609234285053
PGSPGAPGRP	10	Unmodified	_PGSPGAPGRP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S2	2	447.7015075683594	2	446.735409	891.456264	-0.10899	-4.869E-05	0.23083	0.00010312	0.12184	5.4431E-05	446.73538834554284	18.428	0.88682	18.065	17.434	18.321	-0.36325					37	16	3	0	0	0	0.40515	2	6360	6183;6360		41.84	7.4379	1	50525000	+		24173	13018	15266	15352	23245;23246	23246					0.006194609234285053
PGSPGAPGRP	10	Unmodified	_PGSPGAPGRP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	447.2153625488281	2	446.735409	891.456264	-0.19869	-8.8763E-05	0.30782	0.00013751	0.10912	4.875E-05	446.73546571220453	17.582	1.2487	17.663	17.065	18.314	0.081358					54	23	4	0	0	0	0.091457	1	5931	5931		75.761	3.8386	1	85972000	+		24174	13018	15266	15352	23247	23247					0.006194609234285053
PGSPGAPGRP	10	Unmodified	_PGSPGAPGRP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	447.21490478515625	2	446.735409	891.456264	0.04933	2.2037E-05	0.05347	2.3887E-05	0.1028	4.5924E-05	446.7353636337682	17.837	1.1926	17.662	17.064	18.257	-0.17501					57	22	3	0	0	0	0.65652	1	5886	5886		24.021	1.2843	1	50401000	+		24175	13018	15266	15352	23248	23248					0.006194609234285053
PGSPGAPGRP	10	Unmodified	_PGSPGAPGRP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-SECPEP	HCT116MG_D190212_S4	4	447.21490478515625	2	446.735409	891.456264	0.04933	2.2037E-05	0.05347	2.3887E-05	0.1028	4.5924E-05	446.7353636337682	17.837	1.1926	17.662	17.064	18.257	-0.17501					57	22	3	0	0	0	0.27462	1	5886	5886		24.021	1.2843	1	50401000	+		24176	13018	15266	15352	23249	23249					0.006194609234285053
PGSPGAPGRP	10	Unmodified	_PGSPGAPGRP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	446.735409	891.456264	0.18944	8.4628E-05	-0.081669	-3.6484E-05	0.10777	4.8144E-05	446.73526022322636	17.983	0.67759	17.983	17.516	18.193	0	0.13947	-0.00023502	NaN	75.761	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6261600	+		24177	13018	15266	15352							0.006194609234285053
PGSPGAPGRP	10	Unmodified	_PGSPGAPGRP_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	446.735409	891.456264	-0.10899	-4.869E-05	0.23083	0.00010312	0.12184	5.4431E-05	446.73538834554284	18.428	0.88682	18.065	17.434	18.321	-0.36325	0.22185	4.419E-05	NaN	75.761	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50525000	+		24178	13018	15266	15352							0.006194609234285053
PGSPGAPGRPG	11	Unmodified	_PGSPGAPGRPG_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	475.2468566894531	2	475.246141	948.477728	0.2926	0.00013906	0.033466	1.5905E-05	0.32607	0.00015496	475.24622437227004	18.045	0.31202	17.87	17.688	18	-0.17501					8	5	2	0	0	0	0.52486	1	6052	6052		43.772	1.9328	1	1893600	+		24179	13018	15267	15353	23250	23250					0.0014284595214348883
PGSPGENGAP	10	Unmodified	_PGSPGENGAP_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	441.70098876953125	2	441.701232	881.38791	-0.011682	-5.16E-06	-0.016811	-7.4255E-06	-0.028493	-1.2585E-05	441.7010975585938	16.943	0.57245	17.027	16.704	17.277	0.084467					21	10	3	0	0	0	0.64004	1	5742	5742		25.399	7.2643	1	5257700			24180	513;514;515	15268	15354	23251	23251					-0.05752828447089087
PGSPGENGAPG	11	Unmodified	_PGSPGENGAPG_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1;COL1A1|p.P622Lfs*144|1|0.2|ENSG00000108821|chr17:50192807-50192807|G/-|frameshift_variant;COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant;COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2127685546875	2	470.211963	938.409374	0.16531	7.7733E-05	1.2899	0.00060654	1.4552	0.00068427	470.21241797419043	16.3	0.26127	15.96	15.84	16.101	-0.34031					6	4	2	0	0	0	0.70991	1	5512	5512		18.146	5.1039	1	2246100			24181	513;514;515	15269	15355	23252	23252					-0.06229443418374103
PGSPGEQPV	9	Unmodified	_PGSPGEQPV_					0	0	0			REV__GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant	REV__GPR179|p.L1200Afs*38|1|0.36|ENSG00000277399|chr17:38329971-38329972|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	434.2142333984375	2	434.213975	866.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.023	1	23.962	23.462	24.462	-0.061449								0	0	0	0.76694	1	8511	8511		11.64	1.4569	1		+		24182	14463	15270	15356	23253	23253					-0.025153539246616674
PGSPGNIGPAG	11	Unmodified	_PGSPGNIGPAG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S2	2	462.146728515625	2	462.232699	922.450845	0.10518	4.8618E-05	0.14234	6.5796E-05	0.24753	0.00011441	462.23273794405407	20.271	0.73029	19.891	19.346	20.076	-0.37949					23	13	2	0	0	0	0.70991	1	7037	7037		18.146	3.3081	1	7502300			24183	4715	15271	15357	23254	23254					-0.013482626590530344
PGSPGNIGPAG	11	Unmodified	_PGSPGNIGPAG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	462.1465759277344	2	462.232699	922.450845	0.34798	0.00016085	-0.031165	-1.4406E-05	0.31682	0.00014644	462.2325358593757	19.805	1.2495	19.865	19.022	20.271	0.05983					49	23	3	0	0	0	0.69401	3	6883	6646;6883;6930		24.021	7.0783	1	10374000			24184	4715	15271	15357	23255;23256;23257	23256					-0.013482626590530344
PGSPGNIGPAG	11	Unmodified	_PGSPGNIGPAG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	462.23297119140625	2	462.232699	922.450845	0.048835	2.2573E-05	0.2961	0.00013687	0.34494	0.00015944	462.2327018758404	20.048	1.6538	19.854	18.706	20.36	-0.19367					61	31	3	0	0	0	0.69401	3	6587	6587;6666;6931		24.021	7.8715	1	9536000			24185	4715	15271	15357	23258;23259;23260	23258					-0.013482626590530344
PGSPGPAGPA	10	Unmodified	_PGSPGPAGPA_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	807.4002685546875	1	807.399544	806.392267	0.83148	0.00067134	-0.16499	-0.00013321	0.6665	0.00053813	807.3993353164083	21.267	0.41464	20.884	20.598	21.013	-0.38288					10	7	2	0	0	0	0.017694	1	7473	7473		125.62	25.253	1	4935300			24186	521	15272	15358	23261	23261					-0.018673192335313615
PGSPGPAGPA	10	Unmodified	_PGSPGPAGPA_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	807.3992919921875	1	807.399544	806.392267	0.73418	0.00059278	-0.041906	-3.3835E-05	0.69227	0.00055894	807.3994481205784	20.9	0.62451	20.935	20.558	21.183	0.034473					19	11	2	0	0	0	0.032253	1	7208	7208		100.37	22.222	1	8140700			24187	521	15272	15358	23262	23262					-0.018673192335313615
PGSPGPAGPA	10	Unmodified	_PGSPGPAGPA_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	404.2032775878906	2	404.20341	806.392267	-0.14114	-5.7048E-05	0.019336	7.8157E-06	-0.1218	-4.9232E-05	404.2033745737239	20.952	0.57252	20.986	20.558	21.131	0.034472					17	10	2	0	0	0	0.061797	1	7258	7258		81.613	20.256	1	3403200			24188	521	15272	15358	23263	23263					-0.018673192335313615
PGSPGPAGPA	10	Unmodified	_PGSPGPAGPA_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	404.2032775878906	2	404.20341	806.392267	0.13598	5.4962E-05	-0.17908	-7.2383E-05	-0.0431	-1.7421E-05	404.20325915089177	20.995	0.72685	20.785	20.344	21.071	-0.20959					17	13	2	0	0	0	0.11491	1	7196	7196		71.134	18.865	1	3590900			24189	521	15272	15358	23264	23264					-0.018673192335313615
PGSPGPAGPA	10	Unmodified	_PGSPGPAGPA_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	807.39990234375	1	807.399544	806.392267	0.9305	0.00075129	-0.079762	-6.44E-05	0.85074	0.00068689	807.3992142469539	21.115	0.83083	20.905	20.396	21.227	-0.20959					27	15	3	0	0	0	0.079351	1	7205	7205		78.149	10.806	1	6485400			24190	521	15272	15358	23265	23265					-0.018673192335313615
PGSPGPAGPAG	11	Unmodified	_PGSPGPAGPAG_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.71429443359375	2	432.714142	863.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.432	1	20.48	19.98	20.98	0.048107								0	0	0	0.33176	1	7066	7066		56.177	12.405	1				24191	521	15273	15359	23266	23266					-0.023439342048050094
PGSPGPAGPAG	11	Unmodified	_PGSPGPAGPAG_					0	0	0		COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	COL4A3|p.E935Nfs*16|1|0.1|ENSG00000169031|chr2:227284263-227284263|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	432.7140197753906	2	432.714142	863.413731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.41	1	20.208	19.708	20.708	-0.20133								0	0	0	0.30961	1	6985	6985		58.679	12.979	1				24192	521	15273	15359	23267	23267					-0.023439342048050094
PGSPGPAGVHG	11	Unmodified	_PGSPGPAGVHG_					0	0	0			REV__COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant	REV__COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	467.9139404296875	2	466.732866	931.451179	-0.034592	-1.6145E-05	0.26554	0.00012394	0.23095	0.00010779	466.7329392823466	21.139	1.1941	20.929	20.292	21.486	-0.20959					48	22	3	0	0	0	0.71776	1	7319	7319		15.248	0.41021	1	21714000	+		24193	10231	15274	15360	23268	23268					-0.017288429391896898
PGSPGPFDY	9	Unmodified	_PGSPGPFDY_					0	0	0		ENST00000554655.5_1_14:24837525-24841293:+|nuORF;nc|ENSG00000100968|Q14934-11|NFATC4;nc|ENSG00000100968|Q14934-3|NFATC4;nc|ENSG00000100968|Q14934-4|NFATC4;nc|ENSG00000100968|Q14934-5|NFATC4;nc|ENSG00000100968|Q14934-6|NFATC4;nc|ENSG00000100968|Q14934-7|NFATC4;ENSG00000100968|ENST00000250373|NFATC4;nc|ENSG00000100968|Q14934-8|NFATC4;nc|ENSG00000100968|Q14934-9|NFATC4;nc|ENSG00000100968|Q14934-10|NFATC4;NFATC4|p.A853Gfs*31|1|0.47|ENSG00000100968|chr14:24376789-24376790|-/G|frameshift_variant;NFATC4|p.Y722Tfs*122|1|0.43|ENSG00000100968|chr14:24376395-24376395|C/-|frameshift_variant;ENST00000440487.6_1_14:24834883-24840960:+|nuORF;nc|ENSG00000100968|Q14934-12|NFATC4;nc|ENSG00000100968|Q14934-13|NFATC4;nc|ENSG00000100968|Q14934-14|NFATC4;NFATC4|p.F811Lfs*13|1|0.48|ENSG00000100968|chr14:24376662-24376663|-/C|frameshift_variant;nc|ENSG00000100968|Q14934-15|NFATC4;nc|ENSG00000100968|Q14934-16|NFATC4;nc|ENSG00000100968|Q14934-17|NFATC4;nc|ENSG00000100968|Q14934-18|NFATC4;ENST00000556957.5_1_14:24836547-24843333:+|nuORF;ENST00000556302.5_1_14:24838518-24843333:+|nuORF;nc|ENSG00000100968|Q14934-2|NFATC4	ENST00000554655.5_1_14:24837525-24841293:+|nuORF	ENST00000554655.5_1_14:24837525-24841293:+|nuORF	MSMS	HCT116MG_D190212_S3	3	468.66998291015625	2	468.708525	935.402498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.962	1	20.996	20.496	21.496	0.034473								0	0	0	0.76575	1	7280	7280		15.847	5.0233	1				24194	1745	15275	15361	23269	23269					-0.06778756298956523
PGSPGPGPR	9	Unmodified	_PGSPGPGPR_					0	0	0		PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant;ENSG00000162878|ENST00000294964|PKDCC	PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	411.21697998046875	2	411.216852	820.419151	0.0053961	2.219E-06	0.21647	8.9017E-05	0.22187	9.1236E-05	411.2168205815313	15.814	0.9369	15.899	15.404	16.341	0.085423					35	17	3	0	0	0	0.12994	1	5131	5131		52.268	1.4133	1	19257000			24195	4563	15276	15362	23270	23270					0.0017578937766984382
PGSPGPGPR	9	Unmodified	_PGSPGPGPR_					0	0	0		PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant;ENSG00000162878|ENST00000294964|PKDCC	PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	PKDCC|p.V378Wfs*112|1|0.21|ENSG00000162878|chr2:42055298-42055298|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	411.216852	820.419151	-0.50196	-0.00020642	0.57873	0.00023798	0.076768	3.1568E-05	411.2170258508649	15.86	1.0027	15.696	15.261	16.264	-0.16365	-0.10156	0.00014277	NaN	52.268	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7204100			24196	4563	15276	15362							0.0017578937766984382
PGSPGPRGQP	10	Unmodified	_PGSPGPRGQP_					0	0	0		CON__P04258	CON__P04258	CON__P04258	MULTI-SECPEP	HCT116MG_D190212_S4	4	474.7170715332031	2	475.246141	948.477728	0.2926	0.00013906	0.033466	1.5905E-05	0.32607	0.00015496	475.24622437227004	18.045	0.31202	17.87	17.688	18	-0.17501					8	5	2	0	0	0	0.2568	1	5985	5985		39.95	0	1	1893600		+	24197	557	15277	15363	23271	23271					0.0014284595214348883
PGSPGPSGPPG	11	Unmodified	_PGSPGPSGPPG_					0	0	0			REV__ENSG00000168077|ENST00000301904|SCARA3	REV__ENSG00000168077|ENST00000301904|SCARA3	MULTI-MSMS	HCT116MG_D190212_S3	3	906.4317016601562	1	906.431572	905.424296	0.62844	0.00056964	0.26247	0.00023791	0.89091	0.00080755	906.4317793889381	19.892	1.3536	19.94	18.958	20.311	0.048107					48	25	3	0	0	0	0.27854	1	6658	6658		66.457	0	1	10123000	+		24198	13186	15278	15364	23272	23272					-0.032199515503748444
PGSPGPSGPPG	11	Unmodified	_PGSPGPSGPPG_					0	0	0			REV__ENSG00000168077|ENST00000301904|SCARA3	REV__ENSG00000168077|ENST00000301904|SCARA3	MULTI-MSMS	HCT116MG_D190212_S4	4	906.4320678710938	1	906.431572	905.424296	0.70618	0.0006401	0.051424	4.6612E-05	0.7576	0.00068671	906.431526116536	19.978	1.0819	19.785	19.018	20.1	-0.19367					43	20	3	0	0	0	0.41343	1	6630	6630		53.833	0	1	6954700	+		24199	13186	15278	15364	23273	23273					-0.032199515503748444
PGSPGRPGSGA	11	Unmodified	_PGSPGRPGSGA_					0	0	0		nc|ENSG00000157927|Q96JH8-3|RADIL;ENST00000472999.5_1_7:4839011-4843599:-|nuORF;nc|ENSG00000157927|Q96JH8-2|RADIL;RADIL|p.G882Wfs*32|2|0.35|ENSG00000157927|chr7:4801852-4801853|-/G|frameshift_variant;RADIL|p.P881Lfs*110|4|0.34|ENSG00000157927|chr7:4801853-4801853|G/-|frameshift_variant;nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL	nc|ENSG00000157927|Q96JH8-3|RADIL	nc|ENSG00000157927|Q96JH8-3|RADIL	MULTI-MSMS	HCT116MG_D190212_S4	4	470.2358093261719	2	470.235773	938.456993	-0.48792	-0.00022944	0.79028	0.00037162	0.30236	0.00014218	470.2361539074812	15.242	0.19454	15.081	14.978	15.172	-0.16141					5	3	2	0	0	0	0.6626	1	4907	4907		28.495	3.5035	1	1323500			24200	4349	15279	15365	23274	23274					-0.014697444275157068
PGSPGTPGQ	9	Unmodified	_PGSPGTPGQ_					0	0	0			REV__ENSG00000123500|ENST00000651968|COL10A1	REV__ENSG00000123500|ENST00000651968|COL10A1	MULTI-MSMS	HCT116MG_D190212_S3	3	399.1929626464844	2	399.193042	796.371532	-0.13461	-5.3736E-05	-0.13527	-5.3999E-05	-0.26988	-0.00010773	399.1929583060603	16.726	0.93643	16.81	16.288	17.225	0.084467					19	17	2	0	0	0	0.19218	1	5514	5514		42.095	0	1	1567200	+		24201	11767	15280	15366	23275	23275					-0.03479909613190557
PGSPLGDTPP	10	Unmodified	_PGSPLGDTPP_					0	0	0		MBD6|p.T672Yfs*45|1|0.54|ENSG00000166987|chr12:57527150-57527151|-/C|frameshift_variant	MBD6|p.T672Yfs*45|1|0.54|ENSG00000166987|chr12:57527150-57527151|-/C|frameshift_variant	MBD6|p.T672Yfs*45|1|0.54|ENSG00000166987|chr12:57527150-57527151|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	469.234619140625	2	469.234907	936.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.613	1	25.485	24.985	25.985	-0.12795								0	0	0	0.86471	1	9152	9152		20.454	1.0146	1				24202	9322	15281	15367	23276	23276					-0.015507982361441464
PGSPNAPQPSP	11	Unmodified	_PGSPNAPQPSP_					0	0	0		ENST00000454189.6_1_X:13803917-13956726:-|nuORF	ENST00000454189.6_1_X:13803917-13956726:-|nuORF	ENST00000454189.6_1_X:13803917-13956726:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7566528320312	2	524.756538	1047.49852	0.28765	0.00015094	0.096109	5.0434E-05	0.38376	0.00020138	524.7565662338026	23.024	0.31227	22.993	22.831	23.143	-0.031733					9	5	2	0	0	0	0.71271	1	8126	8126		17.113	0.96379	1	4063600			24203	8008	15282	15368	23277	23277					-0.023326084588461526
PGSPNAPQPSP	11	Unmodified	_PGSPNAPQPSP_					0	0	0		ENST00000454189.6_1_X:13803917-13956726:-|nuORF	ENST00000454189.6_1_X:13803917-13956726:-|nuORF	ENST00000454189.6_1_X:13803917-13956726:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	524.756538	1047.49852	0.34037	0.00017861	0.14004	7.3488E-05	0.48041	0.0002521	524.7565294680411	23.511	0.25962	23.128	22.988	23.247	-0.38324	0.06759	3.6237E-05	NaN	17.113	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10866000			24204	8008	15282	15368							-0.023326084588461526
PGSPNAPQPSP	11	Unmodified	_PGSPNAPQPSP_					0	0	0		ENST00000454189.6_1_X:13803917-13956726:-|nuORF	ENST00000454189.6_1_X:13803917-13956726:-|nuORF	ENST00000454189.6_1_X:13803917-13956726:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	524.756538	1047.49852	0.28765	0.00015094	0.096109	5.0434E-05	0.38376	0.00020138	524.7565662338026	23.024	0.31227	22.993	22.831	23.143	-0.031733	-0.06759	-9.8709E-06	NaN	17.113	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4063600			24205	8008	15282	15368							-0.023326084588461526
PGSPNHPTQ	9	Unmodified	_PGSPNHPTQ_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-2|STAG3	REV__nc|ENSG00000292277|Q9UJ98-2|STAG3	MSMS	HCT116MG_D190212_S4	4	467.7221374511719	2	467.722498	933.430444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.37	1	19.184	18.684	19.684	-0.18674								0	0	0	0.16454	1	6565	6565		49.933	7.8384	1		+		24206	10723	15283	15369	23278	23278					-0.03893433318876305
PGSPPGEGAP	10	Unmodified	_PGSPPGEGAP_					0	0	0		nc|ENSG00000103248|Q2M296-4|MTHFSD;nc|ENSG00000103248|Q2M296-3|MTHFSD;nc|ENSG00000103248|Q2M296-2|MTHFSD;ENSG00000103248|ENST00000360900|MTHFSD	nc|ENSG00000103248|Q2M296-4|MTHFSD	nc|ENSG00000103248|Q2M296-4|MTHFSD	MSMS	HCT116MG_D190212_S4	4	433.2061767578125	2	433.20615	864.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.31	1	20.109	19.609	20.609	-0.20133								0	0	0	0.69311	1	6945	6945		37.974	5.1883	1				24207	9409	15284	15370	23279	23279					-0.039876404417100275
PGSPQHDKA	9	Unmodified	_PGSPQHDKA_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MULTI-SECPEP	HCT116MG_D190212_S4	4	469.22222900390625	2	468.730323	935.446094	-0.1126	-5.2779E-05	0.44336	0.00020782	0.33076	0.00015504	468.7303917509364	18.045	0.31201	17.87	17.636	17.948	-0.17501					6	5	2	0	0	0	0.23301	1	5974	5974		10.824	2.2306	1	1213900	+		24208	12782	15285	15371	23280	23280					-0.02421146801816576
PGSPQPPRESS	11	Unmodified	_PGSPQPPRESS_					0	0	0		ENST00000491987.1_1_22:35723272-35729230:+|nuORF	ENST00000491987.1_1_22:35723272-35729230:+|nuORF	ENST00000491987.1_1_22:35723272-35729230:+|nuORF	MSMS	HCT116MG_D190212_S3	3	569.7786865234375	2	569.778002	1137.54145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.795	1	14.878	14.378	15.378	0.083271								0	0	0	0.9465	1	4791	4791		8.1555	0.8663	1				24209	8348	15286	15372	23281	23281					-0.02181838401429559
PGSPRDSFK	9	Unmodified	_PGSPRDSFK_					0	0	0		ENST00000464847.6_2_17:15603361-15603397:+|nuORF	ENST00000464847.6_2_17:15603361-15603397:+|nuORF	ENST00000464847.6_2_17:15603361-15603397:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	495.75396728515625	2	495.753798	989.493044	0.34683	0.00017194	0.078012	3.8675E-05	0.42484	0.00021061	495.7539463848213	29.564	0.20808	29.215	29.085	29.293	-0.34921					5	3	2	0	0	0	0.45867	1	10710	10710		19.257	2.3147	1	3489000			24210	8085	15287	15373	23282	23282					-0.0021228725066748666
PGSPVAGPPP	10	Unmodified	_PGSPVAGPPP_					0	0	0			REV__ENSG00000179292|ENST00000327259|TMEM151A	REV__ENSG00000179292|ENST00000327259|TMEM151A	MSMS	HCT116MG_D190212_S3	3	438.2334289550781	2	438.23471	874.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.504	1	26.355	25.855	26.855	-0.14924								0	0	0	0.92272	1	9511	9511		10.824	0	1		+		24211	13636	15288	15374	23283	23283					0.012618268346614059
PGSPVAGPPP	10	Unmodified	_PGSPVAGPPP_					0	0	0			REV__ENSG00000179292|ENST00000327259|TMEM151A	REV__ENSG00000179292|ENST00000327259|TMEM151A	MSMS	HCT116MG_D190212_S4	4	438.2335510253906	2	438.23471	874.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.218	1	27.887	27.387	28.387	-0.33138								0	0	0	0.90475	1	10137	10137		14.838	4.0143	1		+		24212	13636	15288	15374	23284	23284					0.012618268346614059
PGSPVRQP	8	Unmodified	_PGSPVRQP_					0	0	0		ENST00000573951.1_1_16:3313772-3314576:+|nuORF	ENST00000573951.1_1_16:3313772-3314576:+|nuORF	ENST00000573951.1_1_16:3313772-3314576:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	419.2323303222656	2	419.232502	836.450451	-0.060793	-2.5487E-05	0.19444	8.1515E-05	0.13364	5.6028E-05	419.23237700036526	23.184	0.41633	23.184	22.898	23.314	0					10	7	2	0	0	0	0.81097	1	8264	8264		10.183	0	1	4561600			24213	8911	15289	15375	23285	23285					0.025683624117505133
PGSQGWGHRTP	11	Unmodified	_PGSQGWGHRTP_					0	0	0		ENST00000342963.2_1_7:5459517-5460286:+|nuORF	ENST00000342963.2_1_7:5459517-5460286:+|nuORF	ENST00000342963.2_1_7:5459517-5460286:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	590.282958984375	2	590.286328	1178.5581	0.37464	0.00022115	-2.85	-0.0016823	-2.4754	-0.0014612	590.2840012824446	18.222	0.57458	17.866	17.65	18.224	-0.35647					18	10	3	0	0	0	0.57532	1	6268	6268		38.176	10.547	1	5367800			24214	7237	15290	15376	23286	23286					-0.02403292724829953
PGSQGWGHRTP	11	Unmodified	_PGSQGWGHRTP_					0	0	0		ENST00000342963.2_1_7:5459517-5460286:+|nuORF	ENST00000342963.2_1_7:5459517-5460286:+|nuORF	ENST00000342963.2_1_7:5459517-5460286:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	590.7709350585938	2	590.286328	1178.5581	0.27333	0.00016134	-1.7944	-0.0010592	-1.5211	-0.00089789	590.7871412609085	17.607	1.0928	17.688	16.909	18.002	0.081358					39	20	3	0	0	0	0.41343	2	5842	5744;5842		53.833	21.527	1	5431000			24215	7237	15290	15376	23287;23288	23288					-0.02403292724829953
PGSQNHTGPA	10	Unmodified	_PGSQNHTGPA_					0	0	0		nc|ENSG00000167461|P61006-2|RAB8A	nc|ENSG00000167461|P61006-2|RAB8A	nc|ENSG00000167461|P61006-2|RAB8A	MULTI-MSMS	HCT116MG_D190212_S3	3	483.7276611328125	2	483.225405	964.436257	0.063882	3.087E-05	0.16097	7.7783E-05	0.22485	0.00010865	483.2255223137184	20.706	0.78078	20.74	20.194	20.975	0.034473					22	14	2	0	0	0	0.45124	1	7026	7026		38.615	2.4877	1	4354000			24216	9536	15291	15377	23289	23289					-0.04738334807200317
PGSQNHTGPA	10	Unmodified	_PGSQNHTGPA_					0	0	0		nc|ENSG00000167461|P61006-2|RAB8A	nc|ENSG00000167461|P61006-2|RAB8A	nc|ENSG00000167461|P61006-2|RAB8A	MSMS	HCT116MG_D190212_S3	3	482.7407531738281	2	483.225405	964.436257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.006	1	22.007	21.507	22.507	0.00074577								0	0	0	0.88261	1	7698	7698		18.146	1.2041	1				24217	9536	15291	15377	23290	23290					-0.04738334807200317
PGSQNHTGPA	10	Unmodified	_PGSQNHTGPA_					0	0	0		nc|ENSG00000167461|P61006-2|RAB8A	nc|ENSG00000167461|P61006-2|RAB8A	nc|ENSG00000167461|P61006-2|RAB8A	MSMS	HCT116MG_D190212_S4	4	483.238525390625	2	483.225405	964.436257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.127	1	18.94	18.44	19.44	-0.18674								0	0	0	0.89194	1	6467	6467		16.942	4.4107	1				24218	9536	15291	15377	23291	23291					-0.04738334807200317
PGSQPQPQ	8	Unmodified	_PGSQPQPQ_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	HCT116MG_D190212_S3	3	419.7054443359375	2	419.706317	837.398081	0.055476	2.3284E-05	-0.10501	-4.4075E-05	-0.049538	-2.0792E-05	419.7061931943038	19.261	1.093	19.321	18.449	19.542	0.05983					24	20	2	0	0	0	0.73076	1	6364	6364		19.439	4.8573	1	3378300	+		24219	10852	15292	15378	23292	23292					-0.02712220721855374
PGSQPQPQ	8	Unmodified	_PGSQPQPQ_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	HCT116MG_D190212_S4	4	419.7062072753906	2	419.706317	837.398081	0.12367	5.1904E-05	-0.096688	-4.0581E-05	0.026978	1.1323E-05	419.7061993917696	19.199	1.0917	19.012	18.401	19.493	-0.18674					26	20	2	0	0	0	0.77285	1	6474	6474		14.582	0	1	2143700	+		24220	10852	15292	15378	23293	23293					-0.02712220721855374
PGSQTVKYCR	10	Unmodified	_PGSQTVKYCR_					0	0	0			REV__ENST00000489436.1_1_1:145595040-145598553:-|nuORF	REV__ENST00000489436.1_1_1:145595040-145598553:-|nuORF	MSMS	HCT116MG_D190212_S3	3	569.78564453125	2	569.787315	1137.56008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.578	1	21.596	21.096	22.096	0.018446								0	0	0	0.89062	1	7526	7526		17.113	7.039	1		+		24221	16022	15293	15379	23294	23294					-0.0032000003122902854
PGSRGPGPA	9	Unmodified	_PGSRGPGPA_					0	0	0			REV__ENST00000371485.7_1_10:95256438-95259836:+|nuORF	REV__ENST00000371485.7_1_10:95256438-95259836:+|nuORF	MSMS	HCT116MG_D190212_S3	3	398.2088317871094	2	398.209027	794.403501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.741	1	15.826	15.326	16.326	0.085423								0	0	0	0.27628	1	5173	5173		41.84	3.8656	1		+		24222	15166	15294	15380	23295	23295					-0.001924971393918895
PGSRPGGE	8	Unmodified	_PGSRPGGE_					0	0	0		ENST00000487560.1_1_2:70417790-70417934:-|nuORF	ENST00000487560.1_1_2:70417790-70417934:-|nuORF	ENST00000487560.1_1_2:70417790-70417934:-|nuORF	MSMS	HCT116MG_D190212_S3	3	378.85333251953125	2	378.685385	755.356216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.737	1	24.654	24.154	25.154	-0.083694								0	0	0	0.8837	1	8799	8799		14.582	0	1				24223	8306	15295	15381	23296	23296					-0.031247764103795816
PGSRPPEPPPQ	11	Unmodified	_PGSRPPEPPPQ_					0	0	0			REV__ENSG00000104866|ENST00000221462|PPP1R37	REV__ENSG00000104866|ENST00000221462|PPP1R37	MSMS	HCT116MG_D190212_S4	4	579.7971801757812	2	579.798737	1157.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.506	1	18.325	17.825	18.825	-0.18052								0	0	0	0.94538	1	6216	6216		8.7454	0.83525	1		+		24224	11225	15296	15382	23297	23297					0.010433423578888323
PGSRQRPGQ	9	Unmodified	_PGSRQRPGQ_					0	0	0		ENST00000531709.6_1_11:62566311-62566866:-|nuORF	ENST00000531709.6_1_11:62566311-62566866:-|nuORF	ENST00000531709.6_1_11:62566311-62566866:-|nuORF	MSMS	HCT116MG_D190212_S1	1	491.76239013671875	2	491.762489	981.510425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.626	1	15.626	15.126	16.126	0								0	0	0	0.71946	1	5204	5204		18.146	1.2041	1				24225	8624	15297	15383	23298	23298					0.018930530749912577
PGSRQSPPG	9	Unmodified	_PGSRQSPPG_					0	0	0		ENSG00000167895|ENST00000318430|TMC8;TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant	ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	MSMS	HCT116MG_D190212_S4	4	441.7247314453125	2	441.725041	881.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.784	1	19.59	19.09	20.09	-0.19367								0	0	0	0.56943	1	6732	6732		25.399	3.6527	1				24226	4961	15298	15384	23299	23299					-0.00993129456242059
PGSRRYDEYGR	11	Unmodified	_PGSRRYDEYGR_					0	0	0			REV__ENSG00000188766|ENST00000691638|SPRED3	REV__ENSG00000188766|ENST00000691638|SPRED3	MSMS	HCT116MG_D190212_S4	4	678.3257446289062	2	678.326182	1354.63781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.988	1	24.711	24.211	25.211	-0.2772								0	0	0	0.9465	1	8833	8833		8.1555	1.4324	1		+		24227	13970	15299	15385	23300	23300					-0.025322708415160378
PGSSFAAAG	9	Unmodified	_PGSSFAAAG_					0	0	0			REV__ENST00000523108.5_3_5:179228908-179233332:-|nuORF	REV__ENST00000523108.5_3_5:179228908-179233332:-|nuORF	MSMS	HCT116MG_D190212_S3	3	382.6821594238281	2	382.682311	763.350068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.707	1	19.767	19.267	20.267	0.05983								0	0	0	0.71969	1	6774	6774		18.135	3.5533	1		+		24228	16254	15300	15386	23301	23301					-0.04107294641914905
PGSSGPPGPA	10	Unmodified	_PGSSGPPGPA_					0	0	0		ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	HCT116MG_D190212_S3	3	823.3941650390625	1	823.394458	822.387182	1.0411	0.00085722	0.085456	7.0364E-05	1.1265	0.00092759	823.3945994718626	26.102	0.26086	25.974	25.755	26.016	-0.12795					7	4	2	0	0	0	0.29592	1	9343	9343		50.855	2.5092	1	2622700			24229	1408	15301	15387	23302	23302					-0.031116230961401925
PGSSHLLDAVT	11	Unmodified	_PGSSHLLDAVT_					0	0	0			REV__ENSG00000177673|ENST00000313965|TEX44	REV__ENSG00000177673|ENST00000313965|TEX44	MULTI-SECPEP	HCT116MG_D190212_S3	3	549.2874145507812	2	548.785296	1095.55604	0.55241	0.00030315	1.0472	0.00057466	1.5996	0.00087781	549.2871033384894	26.17	0.31281	26.042	25.911	26.224	-0.12795					6	5	2	0	0	0	0.35748	1	9409	9409		8.1555	0	1	3352500	+		24230	13580	15302	15388	23303	23303					0.012082337467063553
PGSSLWCLP	9	Unmodified	_PGSSLWCLP_					0	0	0		ENST00000403028.7_1_15:49913184-49917342:+|nuORF	ENST00000403028.7_1_15:49913184-49917342:+|nuORF	ENST00000403028.7_1_15:49913184-49917342:+|nuORF	MSMS	HCT116MG_D190212_S4	4	480.2373352050781	2	480.236396	958.458238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.008	1	15.844	15.344	16.344	-0.16364								0	0	0	0.76669	1	5207	5207		12.532	1.7076	1				24231	7701	15303	15389	23304	23304					-0.022652463830013403
PGSSQAPRKP	10	Unmodified	_PGSSQAPRKP_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA;TXLNA|p.G94Afs*35|1|0.2|ENSG00000084652|chr1:32181348-32181348|G/-|frameshift_variant	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	HCT116MG_D190212_S2	2	512.780517578125	2	512.780348	1023.54614	0.11933	6.1188E-05	0.081705	4.1896E-05	0.20103	0.00010308	512.7802512486963	14.433	0.1376	14.114	14.002	14.14	-0.31952					4	2	2	0	0	0	0.72678	1	4734	4734		18.146	1.9972	1	2546400			24232	1448	15304	15390	23305	23305					0.03531090531987502
PGSSRPRPA	9	Unmodified	_PGSSRPRPA_					0	0	0			REV__CLDN9|p.L180Sfs*196|1|0.28|ENSG00000213937|chr16:3013894-3013894|G/-|frameshift_variant	REV__CLDN9|p.L180Sfs*196|1|0.28|ENSG00000213937|chr16:3013894-3013894|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	462.1466064453125	2	462.754133	923.493713	0.010719	4.9604E-06	-2.021	-0.00093524	-2.0103	-0.00093028	462.7519287478781	29.687	0.26003	29.338	29.189	29.449	-0.34921					6	4	2	0	0	0	0.25445	1	10682	10682		8.5933	3.8373	1	2557200	+		24233	10202	15305	15391	23306	23306					0.028905521890351338
PGSSRPRPA	9	Unmodified	_PGSSRPRPA_					0	0	0			REV__CLDN9|p.L180Sfs*196|1|0.28|ENSG00000213937|chr16:3013894-3013894|G/-|frameshift_variant	REV__CLDN9|p.L180Sfs*196|1|0.28|ENSG00000213937|chr16:3013894-3013894|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	462.754133	923.493713	0.51612	0.00023884	-5.0974	-0.0023588	-4.5813	-0.00212	462.75184579501746	29.543	0.47478	29.307	29.135	29.61	-0.23655	-0.015753	-7.874E-05	NaN	8.5933	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4417500	+		24234	10202	15305	15391							0.028905521890351338
PGSSSFGAA	9	Unmodified	_PGSSSFGAA_					0	0	0			REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF	REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	780.3523559570312	1	780.352259	779.344983	0.85938	0.00067062	0.049335	3.8499E-05	0.90871	0.00070912	780.3521794453936	29.158	3.8257	28.817	26.194	30.02	-0.34059					106	73	2	0	0	0	0.17018	1	10901	10901		44.407	0	1	7050900	+		24235	11044	15306	15392	23307	23307					-0.05351598504523736
PGSSSGPVP	9	Unmodified	_PGSSSGPVP_					0	0	0			REV__nc|ENSG00000137098|Q99932-1|SPAG8	REV__nc|ENSG00000137098|Q99932-1|SPAG8	MULTI-MSMS	HCT116MG_D190212_S3	3	784.3837280273438	1	784.383559	783.376283	0.77252	0.00060595	0.43177	0.00033867	1.2043	0.00094462	784.3836659712396	27.315	0.78021	27.146	26.964	27.744	-0.16933					22	14	2	0	0	0	0.058138	1	9833	9833		70.716	6.4792	1	8597600	+		24236	12162	15307	15393	23308	23308					-0.02407025470415647
PGSSSGPVP	9	Unmodified	_PGSSSGPVP_					0	0	0			REV__nc|ENSG00000137098|Q99932-1|SPAG8	REV__nc|ENSG00000137098|Q99932-1|SPAG8	MULTI-MSMS	HCT116MG_D190212_S4	4	784.385009765625	1	784.383559	783.376283	0.93015	0.0007296	2.2161	0.0017383	3.1462	0.0024678	784.3836386848712	27.724	0.61356	27.403	26.94	27.554	-0.32157					15	11	2	0	0	0	0.035402	1	9864	9864		81.864	17.628	1	2136100	+		24237	12162	15307	15393	23309	23309					-0.02407025470415647
PGSSSGPVP	9	Unmodified	_PGSSSGPVP_					0	0	0			REV__nc|ENSG00000137098|Q99932-1|SPAG8	REV__nc|ENSG00000137098|Q99932-1|SPAG8	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	784.383559	783.376283	0.77252	0.00060595	0.43177	0.00033867	1.2043	0.00094462	784.3836659712396	27.315	0.78021	27.146	26.964	27.744	-0.16933	-0.057823	0.00022618	NaN	81.864	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8597600	+		24238	12162	15307	15393							-0.02407025470415647
PGSSSGPVP	9	Unmodified	_PGSSSGPVP_					0	0	0			REV__nc|ENSG00000137098|Q99932-1|SPAG8	REV__nc|ENSG00000137098|Q99932-1|SPAG8	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	784.383559	783.376283	0.93015	0.0007296	2.2161	0.0017383	3.1462	0.0024678	784.3836386848712	27.724	0.61356	27.403	26.94	27.554	-0.32157	0.1991	0.0016258	NaN	81.864	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2136100	+		24239	12162	15307	15393							-0.02407025470415647
PGSSYQQSPG	10	Unmodified	_PGSSYQQSPG_					0	0	0		ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant;ZC3H6|p.S1077Vfs*4|1|0.35|ENSG00000188177|chr2:112332141-112332141|A/-|frameshift_variant;ENSG00000188177|ENST00000409871|ZC3H6	ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant	ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	504.2254638671875	2	504.225071	1006.43559	0.25629	0.00012923	0.064514	3.253E-05	0.32081	0.00016176	504.2250944273812	16.594	2.1334	16.679	15.404	17.538	0.085424					65	40	2	0	0	0	0.65928	1	5418	5418		23.79	1.0535	1	3548900			24240	5973	15308	15394	23310	23310					-0.06737174246893574
PGSSYQQSPG	10	Unmodified	_PGSSYQQSPG_					0	0	0		ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant;ZC3H6|p.S1077Vfs*4|1|0.35|ENSG00000188177|chr2:112332141-112332141|A/-|frameshift_variant;ENSG00000188177|ENST00000409871|ZC3H6	ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant	ZC3H6|p.Q611Sfs*60|1|0.05|ENSG00000188177|chr2:112324638-112324638|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	504.2252502441406	2	504.225071	1006.43559	-0.28495	-0.00014368	0.24083	0.00012143	-0.044115	-2.2244E-05	504.225276315548	16.735	2.308	16.568	14.973	17.281	-0.16664					79	45	2	0	0	0	0.60826	1	5405	5405		27.629	0	1	1858500			24241	5973	15308	15394	23311	23311					-0.06737174246893574
PGSTALDLFKF	11	Unmodified	_PGSTALDLFKF_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MSMS	HCT116MG_D190212_S3	3	598.3198852539062	2	598.321514	1194.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.913	1	22.894	22.394	23.394	-0.018869								0	0	0	0.93717	1	8063	8063		13.042	1.5478	1				24242	6078	15309	15395	23312	23312					0.03894567820270822
PGSTALDLFKF	11	Unmodified	_PGSTALDLFKF_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MSMS	HCT116MG_D190212_S4	4	598.3196411132812	2	598.321514	1194.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.286	1	22.059	21.559	22.559	-0.22777								0	0	0	0.91433	1	7744	7744		18.146	5.6148	1				24243	6078	15309	15395	23313	23313					0.03894567820270822
PGSTALDLFKF	11	Unmodified	_PGSTALDLFKF_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MSMS	HCT116MG_D190212_S4	4	598.3194580078125	2	598.321514	1194.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.836	1	22.599	22.099	23.099	-0.23758								0	0	0	0.91433	1	7965	7965		18.146	8.0724	1				24244	6078	15309	15395	23314	23314					0.03894567820270822
PGSTALDLFKF	11	Unmodified	_PGSTALDLFKF_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MSMS	HCT116MG_D190212_S4	4	598.3201904296875	2	598.321514	1194.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.005	1	22.768	22.268	23.268	-0.23758								0	0	0	0.91433	1	8033	8033		18.146	4.5315	1				24245	6078	15309	15395	23315	23315					0.03894567820270822
PGSTAPLEFLH	11	Unmodified	_PGSTAPLEFLH_					0	0	0		ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2	ENSG00000167207|ENST00000647318|NOD2	ENSG00000167207|ENST00000647318|NOD2	MSMS	HCT116MG_D190212_S4	4	584.8015747070312	2	584.803488	1167.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.662	1	18.481	17.981	18.981	-0.18052								0	0	0	0.91433	1	6279	6279		18.146	5.1039	1				24246	4911	15310	15396	23316	23316					0.01533110643413238
PGSTAQQMTHL	11	Unmodified	_PGSTAQQMTHL_					0	0	0		ENST00000512169.1_1_4:23833158-23883602:-|nuORF;ENST00000509642.5_1_4:23822235-23883683:-|nuORF	ENST00000512169.1_1_4:23833158-23883602:-|nuORF	ENST00000512169.1_1_4:23833158-23883602:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	585.7827758789062	2	585.78223	1169.54991	0.44414	0.00026017	0.1254	7.3459E-05	0.56954	0.00033363	585.7823863207789	20.319	1.1859	20.118	19.322	20.508	-0.20133					49	22	3	0	0	0	0.71271	1	6745	6745		17.113	2.2746	1	6133300			24247	8489	15311	15397	23317	23317					-0.028086077564466905
PGSTATWPVYE	11	Unmodified	_PGSTATWPVYE_					0	0	0			REV__ENSG00000069248|ENST00000261396|NUP133	REV__ENSG00000069248|ENST00000261396|NUP133	MSMS	HCT116MG_D190212_S4	4	604.2821044921875	2	604.285128	1206.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.685	1	16.518	16.018	17.018	-0.16664								0	0	0	0.93717	1	5480	5480		13.042	0.80181	1		+		24248	10744	15312	15398	23318	23318					-0.039311859731242293
PGSTGNTPAPP	11	Unmodified	_PGSTGNTPAPP_					0	0	0			REV__SLC52A1|p.A354Pfs*3|1|0.33|ENSG00000132517|chr17:5033335-5033335|C/-|frameshift_variant	REV__SLC52A1|p.A354Pfs*3|1|0.33|ENSG00000132517|chr17:5033335-5033335|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2436828613281	2	498.243264	994.471974	0.31354	0.00015622	0.51955	0.00025886	0.83309	0.00041508	498.24348562575847	24.415	0.72881	24.332	23.873	24.601	-0.083694					18	13	2	0	0	0	0.70691	1	8617	8617		19.257	1.1106	1	1942800	+		24249	11994	15313	15399	23319	23319					-0.02548297350199391
PGSTLASAGP	10	Unmodified	_PGSTLASAGP_					0	0	0			REV__ENST00000519106.1_1_8:8559708-8559924:+|nuORF	REV__ENST00000519106.1_1_8:8559708-8559924:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	429.088623046875	2	429.2218	856.429047	0.080725	3.4649E-05	-0.011635	-4.9939E-06	0.06909	2.9655E-05	429.2217200384653	18.219	0.26052	18.295	18.153	18.413	0.076334					7	4	2	0	0	0	0.79392	1	6212	6212		12.532	1.7076	1	2287500	+		24250	16221	15314	15400	23320	23320					-0.004910674076086252
PGSTWTGPPQ	10	Unmodified	_PGSTWTGPPQ_					0	0	0			REV__nc|ENSG00000116691|Q5JXC2-2|MIIP	REV__nc|ENSG00000116691|Q5JXC2-2|MIIP	MSMS	HCT116MG_D190212_S4	4	514.244140625	2	514.245806	1026.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.93	1	16.764	16.264	17.264	-0.16664								0	0	0	0.92607	1	5579	5579		10.074	0.6908	1		+		24251	17111	15315	15401	23321	23321					-0.03511993487586551
PGSVGQKYSEQ	11	Unmodified	_PGSVGQKYSEQ_					0	0	0		ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	HCT116MG_D190212_S2	2	590.8253173828125	2	590.28566	1178.55677	0.28759	0.00016976	-0.63813	-0.00037668	-0.35053	-0.00020692	590.2853325166847	18.861	0.62518	18.498	18.113	18.738	-0.36325					16	11	2	0	0	0	0.3506	1	6407	6407		16.149	0	1	2898200			24252	2242	15316	15402	23322	23322					-0.025369716042632717
PGSVKRSGKDQ	11	Unmodified	_PGSVKRSGKDQ_					0	0	0			REV__ENST00000375173.1_1_9:100364753-100365089:-|nuORF	REV__ENST00000375173.1_1_9:100364753-100365089:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	579.7567749023438	2	579.814919	1157.61528	0.44666	0.00025898	0.60597	0.00035135	1.0526	0.00061033	579.8151966875333	15.356	0.15612	15.44	15.351	15.507	0.083733					4	2	2	0	0	0	0.36495	1	5009	5009		0	0	1	926330	+		24253	12151	15317	15403	23323	23323					0.04278129760905358
PGSVLEDEHQG	11	Unmodified	_PGSVLEDEHQG_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	HCT116MG_D190212_S3	3	584.1882934570312	2	584.267467	1166.52038	0.60867	0.00035563	0.46207	0.00026997	1.0707	0.0006256	584.2676412475319	28.892	0.31256	28.671	28.525	28.838	-0.22196					11	5	3	0	0	0	0.73536	1	10445	10445		8.7454	0.58988	1	3193700			24254	4966	15318	15404	23324	23324					-0.05621848500982196
PGSVLLPSLFP	11	Unmodified	_PGSVLLPSLFP_					0	0	0			REV__ENST00000378643.7_2_9:35079462-35079726:-|nuORF	REV__ENST00000378643.7_2_9:35079462-35079726:-|nuORF	MSMS	HCT116MG_D190212_S4	4	376.2227783203125	3	376.221742	1125.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.851	1	23.592	23.092	24.092	-0.25816								0	0	0	0.95023	1	8373	8373		2.8433	0	1		+		24255	15250	15319	15405	23325	23325					0.0856005968826139
PGSVQSPAP	9	Unmodified	_PGSVQSPAP_					0	0	0		ENST00000549913.6_1_12:113307544-113334582:+|nuORF;nc|ENSG00000089169|Q9Y2J0-2|RPH3A;ENSG00000089169|ENST00000389385|RPH3A	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	MSMS	HCT116MG_D190212_S4	4	420.2161560058594	2	420.216517	838.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.255	1	23.996	23.496	24.496	-0.25816								0	0	0	0.76669	1	8536	8536		12.532	0	1				24256	1519	15320	15406	23326	23326					-0.007190500620481544
PGSVRDPPAP	10	Unmodified	_PGSVRDPPAP_					0	0	0		ENST00000544492.5_1_13:49076918-49089862:-|nuORF	ENST00000544492.5_1_13:49076918-49089862:-|nuORF	ENST00000544492.5_1_13:49076918-49089862:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	496.76141357421875	2	496.761623	991.508694	0.19228	9.5518E-05	-1.0043	-0.00049889	-0.81201	-0.00040338	496.7610584334357	21.004	0.83625	21.039	20.662	21.499	0.034472					23	15	2	0	0	0	0.51145	1	7279	7279		34.402	16.255	1	3964500			24257	8707	15321	15407	23327	23327					0.012599992663695048
PGSVRDPPAP	10	Unmodified	_PGSVRDPPAP_					0	0	0		ENST00000544492.5_1_13:49076918-49089862:-|nuORF	ENST00000544492.5_1_13:49076918-49089862:-|nuORF	ENST00000544492.5_1_13:49076918-49089862:-|nuORF	MSMS	HCT116MG_D190212_S4	4	496.7613525390625	2	496.761623	991.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.293	1	21.083	20.583	21.583	-0.20959								0	0	0	0.84701	1	7342	7342		22.736	4.6013	1				24258	8707	15321	15407	23328	23328					0.012599992663695048
PGSVYFEKGQ	10	Unmodified	_PGSVYFEKGQ_					0	0	0		nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2	nc|ENSG00000131480|O75106-2|AOC2	nc|ENSG00000131480|O75106-2|AOC2	MSMS	HCT116MG_D190212_S4	4	556.3253784179688	2	556.274564	1110.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.469	1	24.2	23.7	24.7	-0.26881								0	0	0	0.86471	1	8623	8623		20.454	1.1966	1				24259	3146	15322	15408	23329	23329					-0.016271512820139833
PGSWAPPSGAQ	11	Unmodified	_PGSWAPPSGAQ_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MSMS	HCT116MG_D190212_S4	4	527.7496337890625	2	527.751256	1053.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.55	1	16.384	15.884	16.884	-0.16664								0	0	0	0.78405	1	5425	5425		34.932	3.6637	1				24260	6606	15323	15409	23330	23330					-0.03664591113283677
PGSWHRWGAPG	11	Unmodified	_PGSWHRWGAPG_					0	0	0			REV__ENST00000492010.1_1_3:137834300-137834606:-|nuORF	REV__ENST00000492010.1_1_3:137834300-137834606:-|nuORF	MSMS	HCT116MG_D190212_S4	4	604.2891235351562	2	604.291414	1206.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.162	1	23.904	23.404	24.404	-0.25816								0	0	0	0.94284	1	8499	8499		10.074	0.6908	1		+		24261	16047	15324	15410	23331	23331					-0.02674684999578858
PGSWKFSQ	8	Unmodified	_PGSWKFSQ_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MSMS	HCT116MG_D190212_S4	4	468.7303161621094	2	468.732335	935.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.359	1	16.196	15.696	16.696	-0.16364								0	0	0	0.8837	1	5349	5349		5.7604	0	1				24262	4376	15325	15411	23332	23332					-0.020190573080981267
PGTAVGPHTAP	11	Unmodified	_PGTAVGPHTAP_					0	0	0		ENST00000216129.6_1_22:43563239-43563701:-|nuORF	ENST00000216129.6_1_22:43563239-43563701:-|nuORF	ENST00000216129.6_1_22:43563239-43563701:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	503.1075439453125	2	502.761623	1003.50869	0.34279	0.00017234	-0.013014	-6.5427E-06	0.32978	0.0001658	502.7616566622793	21.566	0.98652	21.348	20.751	21.737	-0.21832					29	18	2	0	0	0	0.72139	1	7330	7330		13.906	4.5586	1	3254700			24263	6736	15326	15412	23333	23333					0.00707999266353454
PGTAWPPSPG	10	Unmodified	_PGTAWPPSPG_					0	0	0		LRIT1|p.P59Rfs*109|1|0.15|ENSG00000148602|chr10:84237633-84237633|G/-|frameshift_variant	LRIT1|p.P59Rfs*109|1|0.15|ENSG00000148602|chr10:84237633-84237633|G/-|frameshift_variant	LRIT1|p.P59Rfs*109|1|0.15|ENSG00000148602|chr10:84237633-84237633|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	483.7356872558594	2	483.737617	965.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.47	1	16.305	15.805	16.805	-0.16516								0	0	0	0.72975	1	5393	5393		36.127	2.0246	1				24264	9302	15327	15413	23334	23334					-0.023430746536746483
PGTEGTPGQP	10	Unmodified	_PGTEGTPGQP_					0	0	0			REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	REV__COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	470.2484436035156	2	470.722164	939.429775	0.17758	8.359E-05	-1.6837	-0.00079256	-1.5061	-0.00070897	470.7221844240739	20.021	0.41578	19.828	19.632	20.048	-0.19367					12	7	2	0	0	0	0.26542	1	6781	6781		20.454	0	1	2235900	+		24265	10221	15328	15414	23335	23335					-0.042362727585668836
PGTEPLDLH	9	Unmodified	_PGTEPLDLH_					0	0	0		CA14|p.S121Qfs*27|2|0.27|ENSG00000118298|chr1:150262256-150262256|G/-|frameshift_variant;ENST00000607652.5_1_1:150230352-150235277:+|nuORF;ENSG00000118298|ENST00000369111|CA14	CA14|p.S121Qfs*27|2|0.27|ENSG00000118298|chr1:150262256-150262256|G/-|frameshift_variant	CA14|p.S121Qfs*27|2|0.27|ENSG00000118298|chr1:150262256-150262256|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	489.7476501464844	2	489.748182	977.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.446	1	27.276	26.776	27.776	-0.16933								0	0	0	0.71969	1	9891	9891		18.135	4.6271	1				24266	296	15329	15415	23336	23336					-0.007831093448203319
PGTEPQIRTIV	11	Unmodified	_PGTEPQIRTIV_					0	0	0			REV__PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	REV__PLXNB2|p.L1362Rfs*32|1|0.1|ENSG00000196576|chr22:50280578-50280579|CA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	404.2332458496094	3	404.231189	1209.67174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.262	1	44.889	44.389	45.389	-0.37266								0	0	0	0.9598	1	16690	16690		0.40827	0	1		+		24267	17426	15330	15416	23337	23337					0.07528757597560798
PGTFACAC	8	Unmodified	_PGTFACAC_					0	0	0		nc|ENSG00000175356|Q9NQ36-3|SCUBE2;SCUBE2|p.N754Kfs*2|1|0.22|ENSG00000175356|chr11:9029954-9029955|-/T|frameshift_variant;nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S3	3	385.153076171875	2	385.154017	768.293481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.792	1	12.854	12.354	13.354	0.06246								0	0	0	0.8837	1	4015	4015		0.79363	0.79363	1				24268	5376	15331	15417	23338	23338					-0.09993381794447487
PGTFRQPP	8	Unmodified	_PGTFRQPP_					0	0	0			REV__ENSG00000039600|ENST00000265007|SOX30	REV__ENSG00000039600|ENST00000265007|SOX30	MSMS	HCT116MG_D190212_S2	2	450.2403259277344	2	450.240327	898.466101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.495	1	27.153	26.653	27.653	-0.34201								0	0	0	0.8837	1	9990	9990		15.768	0	1		+		24269	10587	15332	15418	23339	23339					0.012806489287982004
PGTGMCQSRAS	11	Unmodified	_PGTGMCQSRAS_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|368|3|anti-sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|368|3|anti-sense	MSMS	HCT116MG_D190212_S4	4	547.7403564453125	2	547.739508	1093.46446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.942	1	15.778	15.278	16.278	-0.16364								0	0	0	0.95196	1	5180	5180		5.2969	0.54088	1		+		24270	16876	15333	15419	23340	23340					-0.07853096213762001
PGTGPARRTER	11	Unmodified	_PGTGPARRTER_					0	0	0			REV__ENST00000379325.7_1_1:1027455-1051471:-|nuORF	REV__ENST00000379325.7_1_1:1027455-1051471:-|nuORF	MSMS	HCT116MG_D190212_S2	2	599.3257446289062	2	599.325985	1196.63742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.076	1	14.749	14.249	15.249	-0.32684								0	0	0	0.95196	1	4983	4983		5.2969	1.3525	1		+		24271	15256	15334	15420	23341	23341					0.04696354229326971
PGTHALVI	8	Unmodified	_PGTHALVI_					0	0	0		ENST00000412626.2_1_9:67272267-67281749:-|nuORF;nc|ENSG00000279688|A6NL99|AQP7P3;ENSG00000259916|ENST00000561882|AQP7B;nc|ENSG00000259916|A0A075B734|AQP7B	ENST00000412626.2_1_9:67272267-67281749:-|nuORF	ENST00000412626.2_1_9:67272267-67281749:-|nuORF	MSMS	HCT116MG_D190212_S1	1	404.23919677734375	2	404.239796	806.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.287	1	25.287	24.787	25.787	0								0	0	0	0.8837	1	9089	9089		6.3541	0	1				24272	6621	15335	15421	23342	23342					0.054064345598817454
PGTPGSPGPA	10	Unmodified	_PGTPGSPGPA_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant;ENST00000493991.5_1_12:48375847-48382223:-|nuORF;COL2A1|p.G741Wfs*29|1|0.36|ENSG00000139219|chr12:47982583-47982584|-/G|frameshift_variant;COL2A1|p.Q479Rfs*150|1|0.18|ENSG00000139219|chr12:47986428-47986428|G/-|frameshift_variant	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MSMS	HCT116MG_D190212_S4	4	419.2086181640625	2	419.208692	836.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.354	1	21.137	20.637	21.637	-0.21757								0	0	0	0.90023	1	7367	7367		15.847	2.3393	1				24273	3613	15336	15422	23343	23343					-0.021913365790965145
PGTRGDLHSDV	11	Unmodified	_PGTRGDLHSDV_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-MSMS	HCT116MG_D190212_S4	4	578.2848510742188	2	577.283451	1152.55235	0.37313	0.0002154	1.3624	0.00078649	1.7355	0.0010019	577.7850624522355	22.045	0.9344	21.817	21.313	22.247	-0.22777					48	17	4	0	0	0	0.73364	1	7525	7525		9.3831	0.035688	1	27369000	+		24274	13019	15337	15423	23344	23344					-0.01782436027156109
PGTSGPPGEN	10	Unmodified	_PGTSGPPGEN_					0	0	0		CON__P04258	CON__P04258	CON__P04258	MULTI-MSMS	HCT116MG_D190212_S4	4	456.7071838378906	2	456.706514	911.398475	-0.14457	-6.6025E-05	1.0074	0.00046009	0.86283	0.00039406	456.70696679857025	17.449	0.72474	17.279	16.76	17.484	-0.17047					16	13	2	0	0	0	0.37629	1	5760	5760		43.858	14.777	1	1785100		+	24275	557	15338	15424	23345	23345					-0.06076845792665608
PGTSPSGSPQP	11	Unmodified	_PGTSPSGSPQP_					0	0	0			REV__ENST00000609309.2_3_7:99955758-99956429:+|nuORF	REV__ENST00000609309.2_3_7:99955758-99956429:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7535400390625	2	506.240721	1010.46689	0.014747	7.4658E-06	0.37774	0.00019123	0.39248	0.00019869	506.2407988380641	17.582	1.0927	17.664	17.013	18.106	0.081358					25	20	2	0	0	0	0.72139	1	5661	5661		13.906	1.6654	1	2033700	+		24276	16789	15339	15425	23346	23346					-0.037926012127968534
PGTSSWTQ	8	Unmodified	_PGTSSWTQ_					0	0	0		ENST00000215909.9_1_22:38071653-38073014:+|nuORF	ENST00000215909.9_1_22:38071653-38073014:+|nuORF	ENST00000215909.9_1_22:38071653-38073014:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.1983642578125	2	432.198325	862.382096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.572	1	22.335	21.835	22.835	-0.23758								0	0	0	0.8837	1	7859	7859		12.532	0.89125	1				24277	6732	15340	15426	23347	23347					-0.054599269587583876
PGTTDSIRSGP	11	Unmodified	_PGTTDSIRSGP_					0	0	0		ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENST00000404155.1_1_6:3177457-3179994:-|nuORF	MSMS	HCT116MG_D190212_S4	4	544.2726440429688	2	544.272552	1086.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.894	1	30.53	30.03	31.03	-0.36416								0	0	0	0.82946	1	11190	11190		29.082	8.667	1				24278	7705	15341	15427	23348	23348					-0.009252407757003311
PGTTGELLPDQ	11	Unmodified	_PGTTGELLPDQ_					0	0	0		ENST00000294484.6_2_1:11577566-11579522:+|nuORF	ENST00000294484.6_2_1:11577566-11579522:+|nuORF	ENST00000294484.6_2_1:11577566-11579522:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	564.2806396484375	2	564.282586	1126.55062	0.34442	0.00019435	-0.70082	-0.00039546	-0.3564	-0.00020111	564.2819219938929	20.791	0.83117	20.582	20.084	20.915	-0.20959					30	15	3	0	0	0	0.72373	1	7257	7257		13.042	0.80181	1	8350600			24279	6969	15342	15428	23349	23349					-0.007594898357638158
PGTTGSPPPFP	11	Unmodified	_PGTTGSPPPFP_					0	0	0			REV__ENST00000529947.1_1_17:42285988-42286177:-|nuORF	REV__ENST00000529947.1_1_17:42285988-42286177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	527.761962890625	2	527.763832	1053.51311	0.14295	7.5445E-05	-1.5786	-0.00083311	-1.4356	-0.00075766	527.7623234633371	17.404	0.52019	17.485	17.117	17.638	0.081358					14	9	3	0	0	0	0.69028	1	5888	5888		25.399	1.3787	1	1713600	+		24280	16302	15343	15429	23350	23350					-0.011505363107289668
PGTTSAPSQHP	11	Unmodified	_PGTTSAPSQHP_					0	0	0			REV__nc|ENSG00000054938|Q6WN34-5|CHRDL2	REV__nc|ENSG00000054938|Q6WN34-5|CHRDL2	MULTI-MSMS	HCT116MG_D190212_S3	3	540.2603759765625	2	540.259445	1078.50434	0.36253	0.00019586	-0.27973	-0.00015113	0.082805	4.4736E-05	540.2589017551428	20.306	0.72884	20.354	20.051	20.78	0.048107					16	13	2	0	0	0	0.61797	1	7065	7065		33.445	0	1	2491900	+		24281	17071	15344	15430	23351	23351					-0.03177509947204271
PGTTSAPSQHP	11	Unmodified	_PGTTSAPSQHP_					0	0	0			REV__nc|ENSG00000054938|Q6WN34-5|CHRDL2	REV__nc|ENSG00000054938|Q6WN34-5|CHRDL2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	540.259445	1078.50434	0.4627	0.00024998	-0.73953	-0.00039954	-0.27683	-0.00014956	540.2587504186353	20.705	0.57147	20.5	20.193	20.764	-0.20469	0.073131	-0.00012008	NaN	33.445	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2041400	+		24282	17071	15344	15430							-0.03177509947204271
PGTTVPGPPG	10	Unmodified	_PGTTVPGPPG_					0	0	0			REV__ENST00000390006.8_1_17:80416158-80417872:+|nuORF	REV__ENST00000390006.8_1_17:80416158-80417872:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	440.2320861816406	2	440.232168	878.449782	0.27902	0.00012283	-0.42617	-0.00018761	-0.14716	-6.4783E-05	440.23195574246074	29.084	0.62472	28.862	28.525	29.15	-0.22195					21	11	3	0	0	0	0.59599	1	10526	10526		28.487	3.813	1	4814600	+		24283	15298	15345	15431	23352	23352					0.005695229720458883
PGTTVPGPPG	10	Unmodified	_PGTTVPGPPG_					0	0	0			REV__ENST00000390006.8_1_17:80416158-80417872:+|nuORF	REV__ENST00000390006.8_1_17:80416158-80417872:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	440.2322998046875	2	440.232168	878.449782	0.2416	0.00010636	-0.23717	-0.00010441	0.0044265	1.9487E-06	440.2320235431254	29.13	0.51923	28.79	28.574	29.093	-0.34059					14	9	2	0	0	0	0.59599	1	10487	10487		28.487	3.813	1	3968200	+		24284	15298	15345	15431	23353	23353					0.005695229720458883
PGTTVPGPPG	10	Unmodified	_PGTTVPGPPG_					0	0	0			REV__ENST00000390006.8_1_17:80416158-80417872:+|nuORF	REV__ENST00000390006.8_1_17:80416158-80417872:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	440.232168	878.449782	0.27902	0.00012283	-0.42617	-0.00018761	-0.14716	-6.4783E-05	440.23195574246074	29.084	0.62472	28.862	28.525	29.15	-0.22195	0.0364	-9.7545E-05	NaN	28.487	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4814600	+		24285	15298	15345	15431							0.005695229720458883
PGTTVPGPPG	10	Unmodified	_PGTTVPGPPG_					0	0	0			REV__ENST00000390006.8_1_17:80416158-80417872:+|nuORF	REV__ENST00000390006.8_1_17:80416158-80417872:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	440.232168	878.449782	0.2416	0.00010636	-0.23717	-0.00010441	0.0044265	1.9487E-06	440.2320235431254	29.13	0.51923	28.79	28.574	29.093	-0.34059	-0.0364	6.8865E-05	NaN	28.487	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3968200	+		24286	15298	15345	15431							0.005695229720458883
PGTVTEHPKLL	11	Unmodified	_PGTVTEHPKLL_					0	0	0		nc|ENSG00000257198|Q63HN1|SPATA31F2P;ENSG00000205108|ENST00000378788|FAM205A	nc|ENSG00000257198|Q63HN1|SPATA31F2P	nc|ENSG00000257198|Q63HN1|SPATA31F2P	MSMS	HCT116MG_D190212_S1	1	596.3394165039062	2	596.340238	1190.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.061	1	19.061	18.561	19.561	0								0	0	0	0.94284	1	6588	6588		10.074	3.3508	1				24287	6368	15346	15432	23354	23354					0.07821659085880128
PGTYCCHH	8	Unmodified	_PGTYCCHH_					0	0	0		ENST00000389048.7_2_2:30143287-30143704:-|nuORF	ENST00000389048.7_2_2:30143287-30143704:-|nuORF	ENST00000389048.7_2_2:30143287-30143704:-|nuORF	MSMS	HCT116MG_D190212_S4	4	459.1722106933594	2	459.173272	916.331992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3655	1	8.134	7.634	8.634	-0.23148								0	0	0	0.8837	1	2556	2556		0.79363	0	1				24288	7593	15347	15433	23355	23355					-0.129520761599224
PGVDIPSS	8	Unmodified	_PGVDIPSS_					0	0	0		ENST00000373874.6_1_20:35220052-35220253:+|nuORF	ENST00000373874.6_1_20:35220052-35220253:+|nuORF	ENST00000373874.6_1_20:35220052-35220253:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	772.383544921875	1	771.38831	770.381034	0.79286	0.0006116	-2.7017	-0.0020841	-1.9088	-0.0014725	771.3877811796478	34.63	0.81885	34.245	33.724	34.543	-0.38558					24	15	2	0	0	0	0.64761	1	12570	12570		28.173	0	1	6033200			24289	7482	15348	15434	23356	23356					-0.01334141327663474
PGVDPPEPSGP	11	Unmodified	_PGVDPPEPSGP_					0	0	0			REV__PROB1|p.A65Rfs*107|1|0.45|ENSG00000228672|chr5:139394889-139394889|C/-|frameshift_variant	REV__PROB1|p.A65Rfs*107|1|0.45|ENSG00000228672|chr5:139394889-139394889|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	524.7488403320312	2	524.750921	1047.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.645	1	15.483	14.983	15.983	-0.16173								0	0	0	0.95023	1	5060	5060		6.2058	0.97511	1		+		24290	14315	15349	15435	23357	23357					-0.034554305529809426
PGVGECLRSEE	11	Unmodified	_PGVGECLRSEE_					0	0	0			REV__ENSG00000161849|ENST00000257951|KRT84	REV__ENSG00000161849|ENST00000257951|KRT84	MULTI-MSMS	HCT116MG_D190212_S4	4	588.2691650390625	2	588.271695	1174.52884	0.52763	0.00031039	-2.0388	-0.0011994	-1.5112	-0.00088901	588.2705757871456	30.305	0.92143	29.948	29.129	30.05	-0.35711					24	19	2	0	0	0	0.72139	1	11002	11002		13.906	0	1	7142000	+	+	24291	10272	15350	15436	23358	23358					-0.05144617855967226
PGVGSSNY	8	Unmodified	_PGVGSSNY_					0	0	0			REV__nc|ENSG00000143590|P52797-2|EFNA3	REV__nc|ENSG00000143590|P52797-2|EFNA3	MULTI-MSMS	HCT116MG_D190212_S3	3	780.4138793945312	1	780.352259	779.344983	0.67547	0.0005271	0.11811	9.2166E-05	0.79357	0.00061927	780.3523020365647	33.568	1.1761	33.278	33.011	34.188	-0.29013					31	22	2	0	0	0	0.60054	1	12525	12525		32.305	3.8186	1	7661500	+		24292	12398	15351	15437	23359	23359					-0.05351598504523736
PGVGSSNY	8	Unmodified	_PGVGSSNY_					0	0	0			REV__nc|ENSG00000143590|P52797-2|EFNA3	REV__nc|ENSG00000143590|P52797-2|EFNA3	MULTI-MSMS	HCT116MG_D190212_S4	4	780.3526611328125	1	780.352259	779.344983	1.111	0.00086698	-0.087731	-6.8461E-05	1.0233	0.00079852	780.3520580264732	33.574	1.3017	33.189	32.887	34.189	-0.38426					46	32	2	0	0	0	0.41924	1	12382	12382		48.346	3.9388	1	10274000	+		24293	12398	15351	15437	23360	23360					-0.05351598504523736
PGVLPLTQPVG	11	Unmodified	_PGVLPLTQPVG_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2;ADNP2|p.P500Qfs*7|1|0.18|ENSG00000101544|chr18:80136908-80136908|C/-|frameshift_variant;ADNP2|p.P628Lfs*39|1|0.11|ENSG00000101544|chr18:80137292-80137292|C/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	539.3189697265625	2	539.318774	1076.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.675	1	38.294	37.794	38.794	-0.38163								0	0	0	0.93181	1	14183	14183		15.847	5.0233	1				24294	65	15352	15438	23361	23361					0.08774889028472899
PGVNGAPG	8	Unmodified	_PGVNGAPG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	668.3185424804688	1	668.336215	667.328939	0.43316	0.0002895	0.24657	0.00016479	0.67973	0.00045429	668.3362653398433	17.837	0.20782	17.662	17.532	17.74	-0.17501					5	3	2	0	0	0	0.84415	1	5913	5913		6.3541	0	1	1514400			24295	4715	15353	15439	23362	23362					-0.01803259950759184
PGVPGWPSGP	10	Unmodified	_PGVPGWPSGP_					0	0	0			REV__nc|ENSG00000205861|Q58A44|PCOTH	REV__nc|ENSG00000205861|Q58A44|PCOTH	MSMS	HCT116MG_D190212_S3	3	476.19842529296875	2	475.74016	949.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.876	1	16.96	16.46	17.46	0.084467								0	0	0	0.90023	1	5631	5631		15.847	4.2069	1		+		24296	17273	15354	15440	23363	23363					-0.010987707910544486
PGVPKVLVW	9	Unmodified	_PGVPKVLVW_					0	0	0		ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	ENSG00000179403|ENST00000476993|VWA1	MSMS	HCT116MG_D190212_S4	4	497.8083801269531	2	497.807845	993.601138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.353	1	45.981	45.481	46.481	-0.37134								0	0	0	0.7676	1	17112	17112		9.3474	4.5914	1				24297	5556	15355	15441	23364	23364					0.1040812907056079
PGVRYKSKP	9	Unmodified	_PGVRYKSKP_					0	0	0		STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	516.30126953125	2	516.303458	1030.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.105	1	31.729	31.229	32.229	-0.37529								0	0	0	0.76669	1	11679	11679		12.532	3.7861	1				24298	2511	15356	15442	23365	23365					0.07829155434069435
PGVVKVLV	8	Unmodified	_PGVVKVLV_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	MULTI-MSMS	HCT116MG_D190212_S2	2	810.544189453125	1	810.544751	809.537475	0.94066	0.00076244	-2.4643	-0.0019974	-1.5236	-0.001235	810.5426633744949	58.24	0.25207	58.07	57.943	58.196	-0.1703					6	4	2	0	0	0	0.87576	1	22531	22531		0.79363	0	1	39214000	+		24299	14448	15357	15443	23366	23366					0.12508768633460932
PGVVKVLV	8	Unmodified	_PGVVKVLV_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	810.544751	809.537475	0.76812	0.00062259	-3.6799	-0.0029828	-2.9118	-0.0023602	810.5414484287264	58.16	0.4304	58.16	57.982	58.413	0	0.045121	-0.00014233	NaN	0.79363	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64753000	+		24300	14448	15357	15443							0.12508768633460932
PGVVKVLV	8	Unmodified	_PGVVKVLV_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	810.544751	809.537475	0.94066	0.00076244	-2.4643	-0.0019974	-1.5236	-0.001235	810.5426633744949	58.24	0.25207	58.07	57.943	58.196	-0.1703	-0.045121	0.000843	NaN	0.79363	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39214000	+		24301	14448	15357	15443							0.12508768633460932
PGVVNAQS	8	Unmodified	_PGVVNAQS_					0	0	0			REV__nc|ENSG00000130402|O43707-3|ACTN4	REV__nc|ENSG00000130402|O43707-3|ACTN4	MSMS	HCT116MG_D190212_S3	3	386.20184326171875	2	386.20341	770.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.895	1	29.658	29.158	30.158	-0.23655								0	0	0	0.8837	1	10876	10876		6.3541	0	1		+		24302	11920	15358	15444	23367	23367					-0.00211319233528684
PGWGPGKP	8	Unmodified	_PGWGPGKP_					0	0	0		ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	MULTI-MSMS	HCT116MG_D190212_S2	2	398.21099853515625	2	398.211038	794.407523	0.075316	2.9992E-05	0.074413	2.9632E-05	0.14973	5.9624E-05	398.2109182720994	24.75	1.4045	24.37	23.146	24.551	-0.38003					59	26	3	0	0	0	0.6854	2	8598	8598;8821		24.674	13.559	1	90618000			24303	5943	15359	15445	23368;23369	23368					0.0020959235432655987
PGWMILRDDF	10	Unmodified	_PGWMILRDDF_					0	0	0		RRP15|p.T247M|1|0.26|ENSG00000067533|chr1:218330982-218330982|C/T|missense_variant	RRP15|p.T247M|1|0.26|ENSG00000067533|chr1:218330982-218330982|C/T|missense_variant	RRP15|p.T247M|1|0.26|ENSG00000067533|chr1:218330982-218330982|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	625.30517578125	2	625.305341	1248.59613	-0.26175	-0.00016367	0.22465	0.00014047	-0.037103	-2.3201E-05	625.3054443594707	16.467	1.2032	16.302	15.77	16.973	-0.165					49	23	3	0	0	0	0.88673	1	5274	5274		1.8442	0	1	3095500			24304	18126	15360	15446	23370	23370					-0.018225428543701128
PGWMQYQQWTF	11	Unmodified	_PGWMQYQQWTF_					0	0	0		ENSG00000163825|ENST00000296142|RTP3	ENSG00000163825|ENST00000296142|RTP3	ENSG00000163825|ENST00000296142|RTP3	MSMS	HCT116MG_D190212_S3	3	736.3265991210938	2	736.326805	1470.63906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.216	1	20.265	19.765	20.765	0.048107								0	0	0	0.95581	1	6979	6979		3.2813	0	1				24305	4638	15361	15447	23371	23371					-0.07743772796948178
PGWMQYQQWTF	11	Unmodified	_PGWMQYQQWTF_					0	0	0		ENSG00000163825|ENST00000296142|RTP3	ENSG00000163825|ENST00000296142|RTP3	ENSG00000163825|ENST00000296142|RTP3	MSMS	HCT116MG_D190212_S4	4	736.32666015625	2	736.326805	1470.63906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.133	1	19.937	19.437	20.437	-0.19687								0	0	0	0.95581	1	6873	6873		3.2813	0	1				24306	4638	15361	15447	23372	23372					-0.07743772796948178
PGWPILIK	8	Unmodified	_PGWPILIK_					0	0	0			REV__ENST00000593809.1_1_19:39360311-39360507:-|nuORF	REV__ENST00000593809.1_1_19:39360311-39360507:-|nuORF	MSMS	HCT116MG_D190212_S3	3	462.1466369628906	2	462.289288	922.564024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.293	1	30.044	29.544	30.544	-0.24946								0	0	0	0.8837	1	11036	11036		0.79363	0	1		+		24307	16708	15362	15448	23373	23373					0.09964457524813497
PGWPIYPRNRY	11	Unmodified	_PGWPIYPRNRY_					0	0	0		ENST00000536703.5_1_12:75892569-75892755:+|nuORF;ENSG00000139278|ENST00000266659|GLIPR1	ENST00000536703.5_1_12:75892569-75892755:+|nuORF	ENST00000536703.5_1_12:75892569-75892755:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	473.58233642578125	3	473.582444	1417.7255	0.18029	8.5384E-05	-0.46235	-0.00021896	-0.28206	-0.00013358	473.5823446973314	19.404	0.36475	19.464	19.281	19.646	0.05983					8	6	2	0	0	0	0.74191	1	6680	6680		2.8433	0	1	2879800			24308	3618	15363	15449	23374	23374					0.03334974819949821
PGWSLGRP	8	Unmodified	_PGWSLGRP_					0	0	0			REV__ENSG00000214897|ENST00000445091|PNMA6E	REV__ENSG00000214897|ENST00000445091|PNMA6E	MSMS	HCT116MG_D190212_S4	4	435.3255310058594	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.156	1	12.991	12.491	13.491	-0.16496								0	0	0	0.8837	1	4115	4115		0.79363	0	1		+		24309	14272	15364	15450	23375	23375					0.016046662743860907
PGWVGHWGP	9	Unmodified	_PGWVGHWGP_					0	0	0			REV__ENST00000454475.1_1_2:74534830-74534989:-|nuORF	REV__ENST00000454475.1_1_2:74534830-74534989:-|nuORF	MSMS	HCT116MG_D190212_S4	4	496.7414855957031	2	496.740494	991.466435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.577	1	40.199	39.699	40.699	-0.37828								0	0	0	0.51205	1	14892	14892		28.173	3.4993	1		+		24310	15734	15365	15451	23376	23376					-0.029639313513371235
PGYDVIAQAQ	10	Unmodified	_PGYDVIAQAQ_					0	0	0		ENST00000578754.5_2_17:7476163-7480421:+|nuORF	ENST00000578754.5_2_17:7476163-7480421:+|nuORF	ENST00000578754.5_2_17:7476163-7480421:+|nuORF	MSMS	HCT116MG_D190212_S2	2	530.841796875	2	531.266739	1060.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.398	1	51.219	50.719	51.719	-0.17868								0	0	0	0.88261	1	19719	19719		18.146	1.0598	1				24311	8943	15366	15452	23377	23377					-0.008914377990549838
PGYMDDGY	8	Unmodified	_PGYMDDGY_					0	0	0			REV__ENST00000569768.1_1_16:20750201-20753061:-|nuORF	REV__ENST00000569768.1_1_16:20750201-20753061:-|nuORF	MSMS	HCT116MG_D190212_S3	3	459.1716003417969	2	459.170918	916.327284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.53	1	15.615	15.115	16.115	0.085423								0	0	0	0.8837	1	5088	5088		2.8892	2.0956	1		+		24312	10721	15367	15453	23378	23378					-0.1342268182169164
PGYMDDGY	8	Unmodified	_PGYMDDGY_					0	0	0			REV__ENST00000569768.1_1_16:20750201-20753061:-|nuORF	REV__ENST00000569768.1_1_16:20750201-20753061:-|nuORF	MSMS	HCT116MG_D190212_S3	3	458.7894287109375	2	459.170918	916.327284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.043	1	17.128	16.628	17.628	0.084467								0	0	0	0.8837	1	5699	5699		6.3541	3.4649	1		+		24313	10721	15367	15453	23379	23379					-0.1342268182169164
PGYRPRASP	9	Unmodified	_PGYRPRASP_					0	0	0		MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant	MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant	MIB2|p.D840Tfs*22|1|0.39|ENSG00000197530|chr1:1628687-1628687|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	500.7296142578125	2	500.769783	999.525013	0.099834	4.9994E-05	-1.7808	-0.00089179	-1.681	-0.0008418	501.2706975665003	18.372	0.36583	18.009	17.799	18.165	-0.36325					10	6	2	0	0	0	0.22781	1	6308	6308		16.942	2.104	1	4281100			24314	9330	15368	15454	23380	23380					0.025231252231378676
PGYSKDKP	8	Unmodified	_PGYSKDKP_					0	0	0		nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9|ARHGAP32	nc|ENSG00000134909|A7KAX9|ARHGAP32	MSMS	HCT116MG_D190212_S4	4	445.84149169921875	2	446.232168	890.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.976	1	20.767	20.267	21.267	-0.20959								0	0	0	0.70483	1	7214	7214		30.225	5.5509	1				24315	3315	15369	15455	23381	23381					0.00017522972052574914
PHAAKRRRQRR	11	Unmodified	_PHAAKRRRQRR_					0	0	0			REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	477.9591064453125	3	477.959131	1430.85556	0.17984	8.5957E-05	0.19492	9.3162E-05	0.37476	0.00017912	477.9591269130362	54.205	2.4142	54.016	52.553	54.967	-0.1894					135	46	4	0	0	0	0.74191	1	20615	20615		1.2148	0	1	269920000	+		24316	14632	15370	15456	23382	23382					0.15737008662290464
PHAAKRRRQRR	11	Unmodified	_PHAAKRRRQRR_					0	0	0			REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	716.435546875	2	716.435058	1430.85556	0.5957	0.00042678	0.33229	0.00023806	0.92799	0.00066485	716.4351502773998	54.432	2.403	54.136	52.467	54.87	-0.29587					100	45	4	0	0	0	0.74191	1	20595	20595		1.1933	0	1	16620000	+		24317	14632	15370	15456	23383	23383					0.15737008662290464
PHAGAESG	8	Unmodified	_PHAGAESG_					0	0	0		ENST00000374017.3_1_6:34725332-34725551:+|nuORF	ENST00000374017.3_1_6:34725332-34725551:+|nuORF	ENST00000374017.3_1_6:34725332-34725551:+|nuORF	MSMS	HCT116MG_D190212_S2	2	363.1646423339844	2	363.164285	724.314017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.907	1	31.665	31.165	32.165	-0.24183								0	0	0	0.8837	1	11787	11787		2.5775	1.7838	1				24318	7485	15371	15457	23384	23384					-0.05916751818756438
PHALLNPKPE	10	Unmodified	_PHALLNPKPE_					0	0	0			REV__FAM83E|p.E420Kfs*121|1|0.4|ENSG00000105523|chr19:48601288-48601288|C/-|frameshift_variant	REV__FAM83E|p.E420Kfs*121|1|0.4|ENSG00000105523|chr19:48601288-48601288|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	558.3121948242188	2	558.314023	1114.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.742	1	33.742	33.242	34.242	0								0	0	0	0.94107	1	12497	12497		6.7232	1.4925	1		+		24319	16809	15372	15458	23385	23385					0.06077120742952502
PHEADNLDPS	10	Unmodified	_PHEADNLDPS_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MSMS	HCT116MG_D190212_S2	2	547.7411499023438	2	547.741085	1093.46762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.15	1	19.775	19.275	20.275	-0.37503								0	0	0	0.80906	1	7028	7028		27.629	0.74515	1				24320	3807	15373	15459	23386	23386					-0.07537806563755112
PHELLNRLILA	11	Unmodified	_PHELLNRLILA_					0	0	0		ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	MSMS	HCT116MG_D190212_S1	1	430.2639465332031	3	430.262712	1287.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.278	1	38.278	37.778	38.778	0								0	0	0	0.95925	1	14326	14326		0.50596	0.34663	1				24321	5694	15374	15460	23387	23387					0.1339331613955892
PHFLVLLI	8	Unmodified	_PHFLVLLI_					0	0	0			REV__nc|ENSG00000170820|P23945-2|FSHR	REV__nc|ENSG00000170820|P23945-2|FSHR	MSMS	HCT116MG_D190212_S2	2	476.3072204589844	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.192	1	41.124	40.624	41.624	-0.068199								0	0	0	0.8837	1	15556	15556		6.3541	0	1		+		24322	13316	15375	15461	23388	23388					0.11805030558900853
PHFSRCFFA	9	Unmodified	_PHFSRCFFA_					0	0	0		ENST00000526163.5_1_11:62566666-62572828:-|nuORF	ENST00000526163.5_1_11:62566666-62572828:-|nuORF	ENST00000526163.5_1_11:62566666-62572828:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	371.1011047363281	3	371.17625	1110.50692	-0.11009	-4.0865E-05	0.86061	0.00031944	0.75052	0.00027857	371.17667352599955	22.328	0.15639	22.328	22.25	22.407	0.00074577					4	2	2	0	0	0	0.75853	1	7828	7828		1.1933	0	1	1106600			24323	8585	15376	15462	23389	23389					-0.043913330232044245
PHGGGGGG	8	Unmodified	_PHGGGGGG_					0	0	0		RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;ENST00000492220.1_1_1:150381497-150445807:+|nuORF;ENSG00000103241|ENST00000262426|FOXF1	RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;ENSG00000103241|ENST00000262426|FOXF1	RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	595.2590942382812	1	595.258299	594.251023	0.38636	0.00022998	1.9464	0.0011586	2.3328	0.0013886	595.259284877468	34.711	0.3119	34.414	34.284	34.596	-0.29707					7	5	2	0	0	0	0.88026	1	12825	12825		0	0	1	3024600			24324	4582;1883	15377	15463	23390	23390					-0.06233272816132285
PHGHCKFLLE	10	Unmodified	_PHGHCKFLLE_					0	0	0			REV__GJA9|p.P185L|1|0.25|ENSG00000131233|chr1:38875545-38875545|G/A|missense_variant	REV__GJA9|p.P185L|1|0.25|ENSG00000131233|chr1:38875545-38875545|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	590.801025390625	2	590.800226	1179.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.821	1	18.821	18.321	19.321	0								0	0	0	0.91906	1	6492	6492		11.64	1.5664	1		+		24325	16850	15378	15464	23391	23391					0.0032889421106574446
PHGKPKIW	8	Unmodified	_PHGKPKIW_					0	0	0		ENSG00000170549|ENST00000302006|IRX1	ENSG00000170549|ENST00000302006|IRX1	ENSG00000170549|ENST00000302006|IRX1	MULTI-SECPEP	HCT116MG_D190212_S1	1	481.2806701660156	2	481.782162	961.549771	0.14947	7.2012E-05	0.25156	0.0001212	0.40103	0.00019321	481.7822190723048	45.053	0.31163	45.053	44.88	45.192	0					7	5	2	0	0	0	0.3238	1	17088	17088		2.5775	1.7838	1	9001700			24326	5138	15379	15465	23392	23392					0.06745805096522872
PHGPARGDI	9	Unmodified	_PHGPARGDI_					0	0	0		ENST00000592854.5_1_19:10961013-10961118:+|nuORF	ENST00000592854.5_1_19:10961013-10961118:+|nuORF	ENST00000592854.5_1_19:10961013-10961118:+|nuORF	MSMS	HCT116MG_D190212_S4	4	460.23876953125	2	460.240858	918.467164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.981	1	34.594	34.094	35.094	-0.38606								0	0	0	0.74436	1	12794	12794		16.942	3.4344	1				24327	9043	15380	15466	23393	23393					0.004668632977086418
PHGSSGSP	8	Unmodified	_PHGSSGSP_					0	0	0			REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	MSMS	HCT116MG_D190212_S1	1	363.1648864746094	2	363.164285	724.314017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.984	1	54.984	54.484	55.484	0								0	0	0	0.8837	1	21101	21101		5.7604	0	1		+		24328	10549	15381	15467	23394	23394					-0.059167518187450696
PHGSSGSPSS	10	Unmodified	_PHGSSGSPSS_					0	0	0			REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	MSMS	HCT116MG_D190212_S1	1	450.1959228515625	2	450.196313	898.378074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.791	1	34.791	34.291	35.291	0								0	0	0	0.92272	1	12920	12920		10.824	1.4765	1		+		24329	10549	15382	15468	23395	23395					-0.07518016452456777
PHGSVRRHPL	10	Unmodified	_PHGSVRRHPL_					0	0	0			REV__ENST00000356300.8_1_14:24047776-24047998:-|nuORF	REV__ENST00000356300.8_1_14:24047776-24047998:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	386.276123046875	3	385.887979	1154.64211	0.031078	1.1993E-05	-0.14089	-5.4369E-05	-0.10982	-4.2377E-05	385.8879338290566	17.802	0.26059	17.802	17.62	17.88	0					6	4	2	0	0	0	0.31123	1	6063	6063		0.77653	0	1	1626600	+		24330	15046	15383	15469	23396	23396					0.07097283162761414
PHHCDFLNLRR	11	Unmodified	_PHHCDFLNLRR_					0	0	0		ENSG00000180096|ENST00000321367|SEPTIN1	ENSG00000180096|ENST00000321367|SEPTIN1	ENSG00000180096|ENST00000321367|SEPTIN1	MSMS	HCT116MG_D190212_S1	1	704.3571166992188	2	704.356762	1406.69897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.36	1	18.36	17.86	18.86	0								0	0	0	0.95686	1	6306	6306		2.7352	0	1				24331	5583	15384	15470	23397	23397					0.011889626569200118
PHHIMINRE	9	Unmodified	_PHHIMINRE_					0	0	0		CNTNAP4|p.L1103P|1|0.24|ENSG00000152910|chr16:76539806-76539806|T/C|missense_variant	CNTNAP4|p.L1103P|1|0.24|ENSG00000152910|chr16:76539806-76539806|T/C|missense_variant	CNTNAP4|p.L1103P|1|0.24|ENSG00000152910|chr16:76539806-76539806|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	574.8023071289062	2	573.795475	1145.5764	0.35979	0.00020644	1.3594	0.00078001	1.7192	0.00098645	573.7954471790166	27.779	0.46344	27.437	27.243	27.706	-0.34201					21	8	3	0	0	0	0.39063	1	10111	10111		23.148	1.4018	1	84620000			24332	506	15385	15471	23398	23398					0.009431259255279656
PHHPRLRGRL	10	Unmodified	_PHHPRLRGRL_					0	0	0			REV__ENST00000541627.2_1_12:133201238-133201527:-|nuORF	REV__ENST00000541627.2_1_12:133201238-133201527:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	619.8698120117188	2	619.870697	1237.72684	0.68206	0.00042279	-1.2154	-0.00075342	-0.53339	-0.00033063	620.3719657186539	53.696	1.6433	53.696	52.434	54.077	0					53	31	2	0	0	0	0.87641	1	20325	20325		4.3292	0.38484	1	38585000	+		24333	16371	15386	15472	23399	23399					0.11748653699351053
PHIKILLII	9	Unmodified	_PHIKILLII_					0	0	0			REV__nc|ENSG00000174970|Q8NH19|OR10AG1	REV__nc|ENSG00000174970|Q8NH19|OR10AG1	MSMS	HCT116MG_D190212_S1	1	530.368896484375	2	530.36807	1058.72159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.372	1	59.372	58.872	59.872	0								0	0	0	0.77025	1	22882	22882		0	0	1		+		24334	13500	15387	15473	23400	23400					0.1945753706420419
PHITQRQVEK	10	Unmodified	_PHITQRQVEK_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	618.34521484375	2	618.346386	1234.67822	0.48755	0.00030148	-0.75477	-0.00046671	-0.26722	-0.00016524	618.3457007723856	51.652	0.56948	51.652	51.451	52.021	0					15	10	2	0	0	0	0.85279	1	19758	19758		7.609	1.4032	1	14970000			24335	1198	15388	15474	23401	23401					0.07026695548938733
PHKPIILIG	9	Unmodified	_PHKPIILIG_					0	0	0		nc|ENSG00000114982|Q9P2N6-2|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3;ENST00000488907.5_1_2:97276365-97278231:-|nuORF;nc|ENSG00000114982|Q9P2N6-8|KANSL3;ENST00000487070.5_1_2:97267510-97285240:-|nuORF;ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3	nc|ENSG00000114982|Q9P2N6-2|KANSL3	nc|ENSG00000114982|Q9P2N6-2|KANSL3	MSMS	HCT116MG_D190212_S3	3	494.3231201171875	2	494.32112	986.627687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.947	1	13.017	12.517	13.517	0.069158								0	0	0	0.77008	1	4075	4075		0.6015	0	1				24336	2439	15389	15475	23402	23402					0.133838179619147
PHLHWRQG	8	Unmodified	_PHLHWRQG_					0	0	0			REV__ENST00000339861.8_3_9:92017874-92020319:-|nuORF	REV__ENST00000339861.8_3_9:92017874-92020319:-|nuORF	MSMS	HCT116MG_D190212_S2	2	515.7716674804688	2	515.770117	1029.52568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.916	1	11.626	11.126	12.126	-0.28953								0	0	0	0.8837	1	3868	3868		2.5775	0	1		+		24337	14966	15390	15476	23403	23403					0.012099646628485061
PHLLAFLL	8	Unmodified	_PHLLAFLL_					0	0	0			REV__CON__P04258	REV__CON__P04258	MSMS	HCT116MG_D190212_S1	1	462.29083251953125	2	462.289288	922.564024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.442	1	30.442	29.942	30.942	0								0	0	0	0.8837	1	11165	11165		2.8892	0	1		+	+	24338	10256	15391	15477	23404	23404					0.09964457524802128
PHLLRLRAL	9	Unmodified	_PHLLRLRAL_					0	0	0		ENST00000548269.1_1_12:53587490-53588125:-|nuORF;nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7	ENST00000548269.1_1_12:53587490-53588125:-|nuORF	ENST00000548269.1_1_12:53587490-53588125:-|nuORF	MSMS	HCT116MG_D190212_S1	1	544.8196411132812	2	544.856193	1087.69783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.101	1	18.101	17.601	18.601	0								0	0	0	0.76877	1	6202	6202		5.2307	0	1				24339	3636	15392	15478	23405	23405					0.1574911635036642
PHLNVERLNI	10	Unmodified	_PHLNVERLNI_					0	0	0			REV__VAV1|p.R63H|1|0.18|ENSG00000141968|chr19:6772995-6772995|G/A|missense_variant	REV__VAV1|p.R63H|1|0.18|ENSG00000141968|chr19:6772995-6772995|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	402.23321533203125	3	402.231412	1203.67241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.1	1	30.839	30.339	31.339	-0.26071								0	0	0	0.96291	1	11350	11350		0.77653	0	1		+		24340	18047	15393	15479	23406	23406					0.07871597037296851
PHLNVERLNI	10	Unmodified	_PHLNVERLNI_					0	0	0			REV__VAV1|p.R63H|1|0.18|ENSG00000141968|chr19:6772995-6772995|G/A|missense_variant	REV__VAV1|p.R63H|1|0.18|ENSG00000141968|chr19:6772995-6772995|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	402.2330017089844	3	402.231412	1203.67241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.595	1	33.211	32.711	33.711	-0.38426								0	0	0	0.95179	1	12235	12235		2.086	0	1		+		24341	18047	15393	15479	23407	23407					0.07871597037296851
PHLPFRKLL	9	Unmodified	_PHLPFRKLL_					0	0	0			REV__ENST00000552245.5_1_12:99225710-99548222:-|nuORF	REV__ENST00000552245.5_1_12:99225710-99548222:-|nuORF	MSMS	HCT116MG_D190212_S1	1	374.23828125	3	374.237838	1119.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.835	1	24.835	24.335	25.335	0								0	0	0	0.76991	1	8908	8908		1.1933	0	1		+		24342	16429	15394	15480	23408	23408					0.1366259811884447
PHLPFRKLL	9	Unmodified	_PHLPFRKLL_					0	0	0			REV__ENST00000552245.5_1_12:99225710-99548222:-|nuORF	REV__ENST00000552245.5_1_12:99225710-99548222:-|nuORF	MSMS	HCT116MG_D190212_S3	3	374.23828125	3	374.237838	1119.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.358	1	25.252	24.752	25.752	-0.10618								0	0	0	0.77018	1	9049	9049		0.26902	0	1		+		24343	16429	15394	15480	23409	23409					0.1366259811884447
PHLQQRRSRRR	11	Unmodified	_PHLQQRRSRRR_					0	0	0		ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	745.4385375976562	2	745.437798	1488.86104	0.90651	0.00067575	0.43152	0.00032167	1.338	0.00099742	745.4380310132518	54.384	1.2732	54.384	53.822	55.095	0					48	24	3	0	0	0	0.74191	1	20874	20874		1.3295	1.0225	1	53740000			24344	7770	15395	15481	23410	23410					0.1361668745410043
PHLSLPLRY	9	Unmodified	_PHLSLPLRY_					0	0	0		PGLYRP1|p.Q48P|1|0.37|ENSG00000008438|chr19:46022879-46022879|T/G|missense_variant	PGLYRP1|p.Q48P|1|0.37|ENSG00000008438|chr19:46022879-46022879|T/G|missense_variant	PGLYRP1|p.Q48P|1|0.37|ENSG00000008438|chr19:46022879-46022879|T/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	548.3211059570312	2	548.319109	1094.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.216	1	31.84	31.34	32.34	-0.37529								0	0	0	0.64498	1	11724	11724		21.747	3.6117	1				24345	9745	15396	15482	23411	23411					0.0801372846817685
PHLSRRQR	8	Unmodified	_PHLSRRQR_					0	0	0		MMP24|p.R151Q|1|0.06|ENSG00000125966|chr20:35251961-35251961|G/A|missense_variant	MMP24|p.R151Q|1|0.06|ENSG00000125966|chr20:35251961-35251961|G/A|missense_variant	MMP24|p.R151Q|1|0.06|ENSG00000125966|chr20:35251961-35251961|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	525.306640625	2	525.307398	1048.60024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.938	1	47.938	47.438	48.438	0								0	0	0	0.8837	1	18227	18227		5.7604	0	1				24346	9334	15397	15483	23412	23412					0.07788727474235202
PHLWHYYV	8	Unmodified	_PHLWHYYV_					0	0	0			REV__ENSG00000158156|ENST00000373884|XKR8	REV__ENSG00000158156|ENST00000373884|XKR8	MSMS	HCT116MG_D190212_S3	3	372.1864013671875	3	372.187143	1113.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.971	1	29.735	29.235	30.235	-0.23655								0	0	0	0.8837	1	10907	10907		1.8442	0	1		+		24347	12773	15398	15484	23413	23413					-0.012628026287302418
PHLWKVKQKKK	11	Unmodified	_PHLWKVKQKKK_					0	0	0		ENST00000322353.3_1_2:109123982-109124054:-|nuORF	ENST00000322353.3_1_2:109123982-109124054:-|nuORF	ENST00000322353.3_1_2:109123982-109124054:-|nuORF	MSMS	HCT116MG_D190212_S4	4	710.4534301757812	2	710.450988	1418.88742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.878	1	44.505	44.005	45.005	-0.37326								0	0	0	0.95925	1	16538	16538		1.4819	0.15237	1				24348	7110	15399	15485	23414	23414					0.19473563572864805
PHLYHLWYR	9	Unmodified	_PHLYHLWYR_					0	0	0			REV__nc|ENSG00000117411|O60909-2|B4GALT2	REV__nc|ENSG00000117411|O60909-2|B4GALT2	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.89273	1283.65636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0764	1	4.1051	3.6051	4.6051	0.028732								0	0	0	0.77018	1	1223	1223		0.26902	0.033176	1		+		24349	11614	15400	15486	23415	23415					0.025879355910319646
PHLYHLWYR	9	Unmodified	_PHLYHLWYR_					0	0	0			REV__nc|ENSG00000117411|O60909-2|B4GALT2	REV__nc|ENSG00000117411|O60909-2|B4GALT2	MSMS	HCT116MG_D190212_S4	4	428.89111328125	3	428.89273	1283.65636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3302	1	1.0656	0.56561	1.5656	-0.26456								0	0	0	0.77018	1	412	412		0.26902	0.1097	1		+		24350	11614	15400	15486	23416	23416					0.025879355910319646
PHNHPPKRKP	10	Unmodified	_PHNHPPKRKP_					0	0	0			REV__ENSG00000174292|ENST00000688331|TNK1	REV__ENSG00000174292|ENST00000688331|TNK1	MSMS	HCT116MG_D190212_S4	4	403.23272705078125	3	403.231746	1206.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4861	1	5.222	4.722	5.722	-0.26414								0	0	0	0.97045	1	1675	1675		0.15932	0.01943	1		+		24351	13476	15401	15487	23417	23417					0.07833856196816669
PHPFQFDWYNR	11	Unmodified	_PHPFQFDWYNR_					0	0	0			REV__nc|ENSG00000156096|P06133-3|UGT2B4	REV__nc|ENSG00000156096|P06133-3|UGT2B4	MSMS	HCT116MG_D190212_S1	1	753.8491821289062	2	753.849293	1505.68403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.236	1	46.236	45.736	46.736	0								0	0	0	0.95636	1	17537	17537		2.9952	1.8019	1		+		24352	12717	15402	15488	23418	23418					-0.048582059393993404
PHPHEEKVE	9	Unmodified	_PHPHEEKVE_					0	0	0		ENST00000547496.5_1_12:89853476-89885774:-|nuORF;ENST00000539190.6_1_12:89855074-89919672:-|nuORF;nc|ENSG00000139323|Q8TC44-2|POC1B;ENSG00000139323|ENST00000313546|POC1B	ENST00000547496.5_1_12:89853476-89885774:-|nuORF	ENST00000547496.5_1_12:89853476-89885774:-|nuORF	MSMS	HCT116MG_D190212_S1	1	551.2700805664062	2	551.269813	1100.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.617	1	19.617	19.117	20.117	0								0	0	0	0.76834	1	6813	6813		6.7232	0	1				24353	3622	15403	15489	23419	23419					-0.021169195675156516
PHPKKFLQK	9	Unmodified	_PHPKKFLQK_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MSMS	HCT116MG_D190212_S1	1	561.844482421875	2	561.842751	1121.67095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.091	1	54.091	53.591	54.591	0								0	0	0	0.76902	1	20733	20733		4.3292	1.334	1		+		24354	12937	15404	15490	23420	23420					0.11498007739169225
PHPLPWLRV	9	Unmodified	_PHPLPWLRV_					0	0	0			REV__ENST00000446716.5_1_2:220084571-220084916:-|nuORF	REV__ENST00000446716.5_1_2:220084571-220084916:-|nuORF	MSMS	HCT116MG_D190212_S1	1	372.2225646972656	3	372.222188	1113.64473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.599	1	28.599	28.099	29.099	0								0	0	0	0.7694	1	10422	10422		2.9952	0.49676	1		+		24355	15678	15405	15491	23421	23421					0.09245738567688022
PHPPMTPD	8	Unmodified	_PHPPMTPD_					0	0	0			REV__nc|ENSG00000103126|O15169-2|AXIN1	REV__nc|ENSG00000103126|O15169-2|AXIN1	MSMS	HCT116MG_D190212_S4	4	446.2034912109375	2	446.205096	890.395638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.507	1	33.124	32.624	33.624	-0.38311								0	0	0	0.8837	1	12200	12200		2.8892	2.0956	1		+		24356	11176	15406	15492	23422	23422					-0.05394392451182739
PHPPPACL	8	Unmodified	_PHPPPACL_					0	0	0			REV__ENSG00000189120|ENST00000536300|SP6	REV__ENSG00000189120|ENST00000536300|SP6	MSMS	HCT116MG_D190212_S2	2	416.2124328613281	2	416.212724	830.410894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.091	1	32.88	32.38	33.38	-0.21135								0	0	0	0.8837	1	12266	12266		2.8892	0	1		+		24357	13990	15407	15493	23423	23423					-0.011094808633401954
PHQPLPPT	8	Unmodified	_PHQPLPPT_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MSMS	HCT116MG_D190212_S4	4	443.7430419921875	2	443.742702	885.470852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.245	1	23.987	23.487	24.487	-0.25816								0	0	0	0.36239	1	8532	8532		50.855	14.811	1			+	24358	549	15408	15494	23424	23424					0.023535330715503733
PHRASERA	8	Unmodified	_PHRASERA_					0	0	0			REV__ENST00000421431.1_1_X:153713321-153713399:-|nuORF	REV__ENST00000421431.1_1_X:153713321-153713399:-|nuORF	MSMS	HCT116MG_D190212_S3	3	462.1466064453125	2	462.243932	922.473312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.905	1	35.605	35.105	36.105	-0.30042								0	0	0	0.8837	1	13248	13248		5.2307	0	1		+		24359	15523	15409	15495	23425	23425					0.008973815292279141
PHRGASGT	8	Unmodified	_PHRGASGT_					0	0	0		ENST00000595535.5_1_19:41021331-41025415:+|nuORF	ENST00000595535.5_1_19:41021331-41025415:+|nuORF	ENST00000595535.5_1_19:41021331-41025415:+|nuORF	MSMS	HCT116MG_D190212_S1	1	391.70025634765625	2	391.698826	781.3831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.735	1	40.735	40.235	41.235	0								0	0	0	0.8837	1	15319	15319		0.69038	0	1				24360	9061	15410	15496	23426	23426					-0.016336677991830584
PHRLPQVP	8	Unmodified	_PHRLPQVP_					0	0	0		ENST00000575282.5_1_17:78187531-78187882:-|nuORF	ENST00000575282.5_1_17:78187531-78187882:-|nuORF	ENST00000575282.5_1_17:78187531-78187882:-|nuORF	MSMS	HCT116MG_D190212_S4	4	472.2752685546875	2	472.277244	942.539935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.837	1	36.452	35.952	36.952	-0.38486								0	0	0	0.8837	1	13496	13496		11.114	0	1				24361	8917	15411	15497	23427	23427					0.06636617091135122
PHRLQNFLP	9	Unmodified	_PHRLQNFLP_					0	0	0			REV__RBM20|p.H797Ifs*113|1|0.28|ENSG00000203867|chr10:110812782-110812782|C/-|frameshift_variant	REV__RBM20|p.H797Ifs*113|1|0.28|ENSG00000203867|chr10:110812782-110812782|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	561.3118286132812	2	561.314358	1120.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.405	1	40.027	39.527	40.527	-0.37828								0	0	0	0.76877	1	14822	14822		5.2307	0.47466	1		+		24362	17464	15412	15498	23428	23428					0.05867960182672505
PHRLVVKPPL	10	Unmodified	_PHRLVVKPPL_					0	0	0			REV__APC|p.S1355Lfs*60|2|0.6|ENSG00000134982|chr5:112839654-112839654|T/-|frameshift_variant	REV__APC|p.S1355Lfs*60|2|0.6|ENSG00000134982|chr5:112839654-112839654|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	578.3739624023438	2	578.371675	1154.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.209	1	39.908	39.408	40.408	-0.30137								0	0	0	0.96291	1	14920	14920		1.8442	0	1		+		24363	9959	15413	15499	23429	23429					0.1576226966460581
PHRPPKRVK	9	Unmodified	_PHRPPKRVK_					0	0	0		nc|ENSG00000077463|Q8N6T7-2|SIRT6;ENSG00000077463|ENST00000337491|SIRT6	nc|ENSG00000077463|Q8N6T7-2|SIRT6	nc|ENSG00000077463|Q8N6T7-2|SIRT6	MSMS	HCT116MG_D190212_S3	3	372.2379150390625	3	372.23672	1113.68833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.709	1	59.451	58.951	59.951	-0.25832								0	0	0	0.77008	1	22745	22745		0.26902	0.033176	1				24364	1352	15414	15500	23430	23430					0.13603348064839338
PHRRSRLQQ	9	Unmodified	_PHRRSRLQQ_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MSMS	HCT116MG_D190212_S3	3	393.2277526855469	3	393.226883	1176.65882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.921	1	48.605	48.105	49.105	-0.31596								0	0	0	0.7689	1	18411	18411		2.7352	0	1		+		24365	14205	15415	15501	23431	23431					0.07755784048708847
PHRVRGPR	8	Unmodified	_PHRVRGPR_					0	0	0		GCFC2|p.V549Sfs*42|1|0.27|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant;GCFC2|p.W710Mfs*3|1|0.22|ENSG00000005436|chr2:75666029-75666030|-/T|frameshift_variant;nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2;nc|ENSG00000005436|P16383-3|GCFC2;nc|ENSG00000005436|P16383-4|GCFC2	GCFC2|p.V549Sfs*42|1|0.27|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant	GCFC2|p.V549Sfs*42|1|0.27|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	488.34283447265625	2	487.791384	973.568215	-0.077628	-3.7866E-05	-0.83356	-0.00040661	-0.91119	-0.00044447	487.7908726067295	53.187	0.93694	52.853	52.359	53.296	-0.33473					20	17	2	0	0	0	0.33364	1	19810	19810		0	0	1	3857300			24366	815	15416	15502	23432	23432					0.0803735979108069
PHSCRTGK	8	Unmodified	_PHSCRTGK_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MSMS	HCT116MG_D190212_S4	4	443.2234802246094	2	443.221611	884.42867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.462	1	24.193	23.693	24.693	-0.26881								0	0	0	0.8837	1	8620	8620		5.7604	0.52976	1		+		24367	11942	15417	15503	23433	23433					-0.01816765608452897
PHTETVSPL	9	Unmodified	_PHTETVSPL_					0	0	0		nc|ENSG00000111704|Q9H9S0-2|NANOG;ENSG00000255192|ENST00000528386|NANOGP8;ENSG00000111704|ENST00000229307|NANOG	nc|ENSG00000111704|Q9H9S0-2|NANOG	nc|ENSG00000111704|Q9H9S0-2|NANOG	MULTI-SECPEP	HCT116MG_D190212_S2	2	490.28594970703125	2	490.756007	979.497461	0.13311	6.5325E-05	0.39488	0.00019379	0.528	0.00025912	490.756194548948	37.233	0.20625	37.13	37.026	37.232	-0.10318					6	3	2	0	0	0	0.2622	1	13960	13960		4.756	0	1	5255300			24368	2311	15418	15504	23434	23434					0.006891771722393969
PHTPRRLSTL	10	Unmodified	_PHTPRRLSTL_					0	0	0			REV__CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant	REV__CLTCL1|p.H915Ifs*56|1|0.35|ENSG00000070371|chr22:19221430-19221430|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	589.845703125	2	589.343646	1176.67274	0.51513	0.00030359	-0.8442	-0.00049752	-0.32906	-0.00019393	589.343051018967	47.697	0.4461	47.697	47.395	47.841	0					12	8	2	0	0	0	0.86862	1	18147	18147		6.2058	1.8765	1	11649000	+		24369	10207	15419	15505	23435	23435					0.09147016757151505
PHTQLETV	8	Unmodified	_PHTQLETV_					0	0	0			REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	462.146484375	2	462.742899	923.471246	0.17755	8.2159E-05	0.50345	0.00023297	0.68099	0.00031513	462.7431013269235	28.42	0.20706	28.09	27.926	28.133	-0.32987					5	3	2	0	0	0	0.29766	1	10337	10337		9.3474	0	1	10334000	+		24370	11907	15420	15506	23436	23436					0.006449080007769226
PHTQLETV	8	Unmodified	_PHTQLETV_					0	0	0			REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	REV__PRKCSH|p.P345Rfs*40|1|0.3|ENSG00000130175|chr19:11447714-11447714|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	462.7432861328125	2	462.742899	923.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.554	1	28.223	27.723	28.723	-0.33138								0	0	0	0.8217	1	10273	10273		20.871	7.3633	1		+		24371	11907	15420	15506	23437	23437					0.006449080007769226
PHVEEQQQQTP	11	Unmodified	_PHVEEQQQQTP_					0	0	0		HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;ENSG00000170606|ENST00000304858|HSPA4	HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	661.36767578125	2	660.812573	1319.61059	0.58451	0.00038625	0.39676	0.00026219	0.98127	0.00064844	660.8128504335124	30.666	0.48774	30.302	30.181	30.668	-0.36416					38	16	3	0	0	0	0.35998	1	11209	11209		6.2058	2.6093	1	9822700			24372	5144	15421	15507	23438	23438					-0.03642799172530431
PHVRNWGD	8	Unmodified	_PHVRNWGD_					0	0	0			REV__ENST00000553611.5_1_14:71060082-71067354:-|nuORF	REV__ENST00000553611.5_1_14:71060082-71067354:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	490.7373962402344	2	490.738483	979.462413	0.033208	1.6296E-05	-1.4638	-0.00071834	-1.4306	-0.00070204	490.73770832669067	36.965	0.24861	36.58	36.435	36.684	-0.38486					6	4	2	0	0	0	0.81097	1	13587	13587		10.183	1.5901	1	5156300	+		24373	16437	15422	15508	23439	23439					-0.028140208450508908
PIATRVFRNTS	11	Unmodified	_PIATRVFRNTS_					0	0	0			REV__ENSG00000055163|ENST00000620254|CYFIP2	REV__ENSG00000055163|ENST00000620254|CYFIP2	MSMS	HCT116MG_D190212_S1	1	631.6732177734375	2	631.354211	1260.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.859	1	48.859	48.359	49.359	0								0	0	0	0.94942	1	18603	18603		6.6304	0.89852	1		+		24374	10646	15423	15509	23440	23440					0.07394982065989097
PIAVLLTYP	9	Unmodified	_PIAVLLTYP_					0	0	0		ENST00000571782.1_1_17:4647099-4647876:+|nuORF;ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15	ENST00000571782.1_1_17:4647099-4647876:+|nuORF	ENST00000571782.1_1_17:4647099-4647876:+|nuORF	MSMS	HCT116MG_D190212_S4	4	493.7974853515625	2	493.799686	985.584819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.04	1	36.655	36.155	37.155	-0.38486								0	0	0	0.7689	1	13578	13578		4.756	0	1				24375	3722	15424	15510	23441	23441					0.09145003113792427
PICDCPLP	8	Unmodified	_PICDCPLP_					0	0	0			REV__ENST00000325327.3_1_19:2429436-2429694:-|nuORF	REV__ENST00000325327.3_1_19:2429436-2429694:-|nuORF	MSMS	HCT116MG_D190212_S3	3	429.0887756347656	2	429.198425	856.382296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.724	1	33.434	32.934	33.934	-0.29013								0	0	0	0.8837	1	12388	12388		11.114	4.7604	1		+		24376	14903	15425	15511	23442	23442					-0.05163966554778199
PICKKLIFNRR	11	Unmodified	_PICKKLIFNRR_					0	0	0			REV__ENST00000311601.5_1_5:171764580-171764949:-|nuORF	REV__ENST00000311601.5_1_5:171764580-171764949:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	695.0089111328125	2	694.421374	1386.82819	0.89146	0.00061905	0.53331	0.00037034	1.4248	0.00098939	694.4217490165681	52.347	1.0173	52.039	51.647	52.664	-0.30769					30	19	2	0	0	0	0.36565	1	19695	19695		3.2813	3.2813	1	21455000	+		24377	14835	15426	15512	23443	23443					0.1502534428702802
PIDEKSWAL	9	Unmodified	_PIDEKSWAL_					0	0	0			REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	REV__tr|U7SMP1|U7SMP1_FUSNUNodBhomologydomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01766PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.3366088867188	2	529.779482	1057.54441	0.50994	0.00027016	-0.35982	-0.00019063	0.15012	7.9532E-05	529.7793763106024	57.412	0.25991	57.237	57.055	57.315	-0.17494					10	4	4	0	0	0	0.25445	1	22107	22107		8.5933	0.68312	1	33641000	+		24378	17729	15427	15513	23444	23444					0.017940367233904908
PIEAPTPP	8	Unmodified	_PIEAPTPP_					0	0	0			REV__ENST00000534385.1_1_11:118272380-118277824:+|nuORF	REV__ENST00000534385.1_1_11:118272380-118277824:+|nuORF	MSMS	HCT116MG_D190212_S4	4	411.2225646972656	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.498	1	31.128	30.628	31.628	-0.37026								0	0	0	0.8837	1	11434	11434		13.508	4.9146	1		+		24379	13142	15428	15514	23445	23445					0.01567022086101133
PIEAPTPP	8	Unmodified	_PIEAPTPP_					0	0	0			REV__ENST00000534385.1_1_11:118272380-118277824:+|nuORF	REV__ENST00000534385.1_1_11:118272380-118277824:+|nuORF	MSMS	HCT116MG_D190212_S4	4	411.2223205566406	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.05	1	31.675	31.175	32.175	-0.37529								0	0	0	0.8837	1	11657	11657		5.2307	2.3415	1		+		24380	13142	15428	15514	23446	23446					0.01567022086101133
PIEIRGPSHCA	11	Unmodified	_PIEIRGPSHCA_					0	0	0		ABLIM3|p.K144E|1|0.6|ENSG00000173210|chr5:149200410-149200410|A/G|missense_variant	ABLIM3|p.K144E|1|0.6|ENSG00000173210|chr5:149200410-149200410|A/G|missense_variant	ABLIM3|p.K144E|1|0.6|ENSG00000173210|chr5:149200410-149200410|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	393.870361328125	3	393.869485	1178.58663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6995	1	5.438	4.938	5.938	-0.26151								0	0	0	0.96141	1	1739	1739		0.094841	0	1				24381	16	15429	15515	23447	23447					0.004476888601175233
PIEPPLERQES	11	Unmodified	_PIEPPLERQES_					0	0	0			REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	REV__PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	647.8341674804688	2	647.835517	1293.65648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.393	1	44.019	43.519	44.519	-0.37373								0	0	0	0.95273	1	16353	16353		4.897	0	1		+		24382	11310	15430	15516	23448	23448					0.021398460097316274
PIERIANKS	9	Unmodified	_PIERIANKS_					0	0	0			REV__LRRD1|p.N660K|1|0.21|ENSG00000240720|chr7:92159141-92159141|A/C|missense_variant	REV__LRRD1|p.N660K|1|0.21|ENSG00000240720|chr7:92159141-92159141|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	514.2985229492188	2	514.298373	1026.58219	0.25341	0.00013033	0.012174	6.2613E-06	0.26558	0.00013659	514.2982963912965	52.466	0.83145	52.125	51.73	52.561	-0.34023					34	15	3	0	0	0	0.69329	1	19499	19499		5.7319	0.83484	1	9555500	+		24383	16989	15431	15517	23449	23449					0.06996547708831713
PIERIANKS	9	Unmodified	_PIERIANKS_					0	0	0			REV__LRRD1|p.N660K|1|0.21|ENSG00000240720|chr7:92159141-92159141|A/C|missense_variant	REV__LRRD1|p.N660K|1|0.21|ENSG00000240720|chr7:92159141-92159141|A/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	514.298373	1026.58219	0.37138	0.000191	0.049868	2.5647E-05	0.42125	0.00021665	514.2982588182193	51.952	1.0305	51.768	51.115	52.145	-0.18369	-0.22983	1.8277E-05	NaN	5.7319	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39146000	+		24384	16989	15431	15517							0.06996547708831713
PIEVGEFMFR	10	Unmodified	_PIEVGEFMFR_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MSMS	HCT116MG_D190212_S1	1	408.87347412109375	3	408.874236	1223.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.299	1	10.299	9.7994	10.799	0								0	0	0	0.97045	1	3151	3151		0.15932	0	1		+		24385	11519	15432	15518	23450	23450					-0.001976587115905204
PIFKRRLLLKE	11	Unmodified	_PIFKRRLLLKE_					0	0	0			REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF	REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF	MSMS	HCT116MG_D190212_S2	2	706.960693359375	2	706.958646	1411.90274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.969	1	37.876	37.376	38.376	-0.09301								0	0	0	0.95954	1	14250	14250		1.3295	0	1		+		24386	10790	15433	15519	23451	23451					0.21326430370072558
PIGMPGPE	8	Unmodified	_PIGMPGPE_					0	0	0			REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	399.1983642578125	2	399.196739	796.378925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.727	1	52.387	51.887	52.887	-0.34023								0	0	0	0.8837	1	19664	19664		5.7604	0	1		+		24387	10249	15434	15520	23452	23452					-0.02740893337113448
PIGPAKFELFP	11	Unmodified	_PIGPAKFELFP_					0	0	0			REV__ENST00000567998.5_1_16:28619793-28620024:-|nuORF	REV__ENST00000567998.5_1_16:28619793-28620024:-|nuORF	MSMS	HCT116MG_D190212_S3	3	608.34033203125	2	608.342249	1214.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.327	1	29.105	28.605	29.605	-0.22195								0	0	0	0.93374	1	10650	10650		14.838	4.7643	1		+		24388	14029	15435	15521	23453	23453					0.07119748579611951
PIHELGTD	8	Unmodified	_PIHELGTD_					0	0	0			REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	MSMS	HCT116MG_D190212_S4	4	441.2226257324219	2	441.2218	880.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.49	1	34.104	33.604	34.604	-0.38558								0	0	0	0.8837	1	12596	12596		9.3474	0	1		+		24389	12548	15436	15522	23454	23454					-0.015950674076066207
PIILRNMGP	9	Unmodified	_PIILRNMGP_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MSMS	HCT116MG_D190212_S1	1	506.26458740234375	2	505.794412	1009.57427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.143	1	19.143	18.643	19.643	0								0	0	0	0.76877	1	6622	6622		5.2307	0	1				24390	5027	15437	15523	23455	23455					0.06986697187721802
PIITVVGLQ	9	Unmodified	_PIITVVGLQ_					0	0	0		tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	470.2971496582031	2	470.29731	938.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.569	1	33.185	32.685	33.685	-0.38426								0	0	0	0.58443	1	12225	12225		24.674	2.9272	1				24391	18377	15438	15524	23456	23456					0.10832118971029558
PIIVVILMIP	10	Unmodified	_PIIVVILMIP_					0	0	0		BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant;BTN2A1|p.K277Rfs*18|1|0.12|ENSG00000112763|chr6:26465296-26465296|A/-|frameshift_variant;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000112763|Q7KYR7-3|BTN2A1;ENST00000377600.6_1_6:26463094-26468774:+|nuORF;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1	BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant	BTN2A1|p.I278Dfs*9|1|0.21|ENSG00000112763|chr6:26465295-26465296|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	554.3643798828125	2	554.364139	1106.71372	0.40684	0.00022554	0.044241	2.4526E-05	0.45108	0.00025006	554.3641573291976	57.282	0.88186	57.282	57.049	57.931	0					27	16	3	0	0	0	0.87641	1	22010	22010		4.3292	2.485	1	10371000			24392	287	15439	15525	23457	23457					0.16463641752397962
PIKARVLEPLP	11	Unmodified	_PIKARVLEPLP_					0	0	0			REV__nc|ENSG00000058056|Q92995-2|USP13	REV__nc|ENSG00000058056|Q92995-2|USP13	MSMS	HCT116MG_D190212_S3	3	617.0859985351562	2	616.889898	1231.76524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.653	1	49.337	48.837	49.837	-0.31596								0	0	0	0.95521	1	18703	18703		3.5965	0	1		+		24393	10659	15440	15526	23458	23458					0.15863101770651156
PIKARVLEPLP	11	Unmodified	_PIKARVLEPLP_					0	0	0			REV__nc|ENSG00000058056|Q92995-2|USP13	REV__nc|ENSG00000058056|Q92995-2|USP13	MSMS	HCT116MG_D190212_S3	3	617.1065673828125	2	616.889898	1231.76524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.172	1	50.86	50.36	51.36	-0.31166								0	0	0	0.94924	1	19315	19315		6.7232	2.3939	1		+		24394	10659	15440	15526	23459	23459					0.15863101770651156
PIKARVLEPLP	11	Unmodified	_PIKARVLEPLP_					0	0	0			REV__nc|ENSG00000058056|Q92995-2|USP13	REV__nc|ENSG00000058056|Q92995-2|USP13	MSMS	HCT116MG_D190212_S3	3	616.8875732421875	2	616.889898	1231.76524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.334	1	51.022	50.522	51.522	-0.31166								0	0	0	0.94924	1	19380	19380		6.7232	2.3939	1		+		24395	10659	15440	15526	23460	23460					0.15863101770651156
PIKDKSGIIPQ	11	Unmodified	_PIKDKSGIIPQ_					0	0	0		NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant;NOC3L|p.L425Yfs*3|1|0.14|ENSG00000173145|chr10:94346540-94346540|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L;NOC3L|p.K235Nfs*2|1|0.43|ENSG00000173145|chr10:94353049-94353049|T/-|frameshift_variant	NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant	NOC3L|p.T423Hfs*5|1|0.09|ENSG00000173145|chr10:94346547-94346547|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	598.3544921875	2	598.355888	1194.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.517	1	36.398	35.898	36.898	-0.11943								0	0	0	0.93717	1	13658	13658		13.042	0	1				24396	5275	15441	15527	23461	23461					0.10766232120022323
PIKKLVPRKV	10	Unmodified	_PIKKLVPRKV_					0	0	0		nc|ENSG00000214193|A4FU49-4|SH3D21;nc|ENSG00000214193|A4FU49-5|SH3D21;SH3D21|p.H471Tfs*31|1|0.4|ENSG00000214193|chr1:36320403-36320403|C/-|frameshift_variant;nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21;ENSG00000214193|ENST00000453908|SH3D21	nc|ENSG00000214193|A4FU49-4|SH3D21	nc|ENSG00000214193|A4FU49-4|SH3D21	MSMS	HCT116MG_D190212_S2	2	393.2745361328125	3	393.276293	1176.80705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.474	1	58.303	57.803	58.803	-0.1703								0	0	0	0.97045	1	22600	22600		0.15932	0	1				24397	6432	15442	15528	23462	23462					0.2257170224982019
PIKLTRKIIEI	11	Unmodified	_PIKLTRKIIEI_					0	0	0			REV__ENSG00000144381|ENST00000388968|HSPD1	REV__ENSG00000144381|ENST00000388968|HSPD1	MSMS	HCT116MG_D190212_S1	1	662.4400024414062	2	662.439755	1322.86496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.989	1	58.989	58.489	59.489	0								0	0	0	0.96208	1	22738	22738		0	0	1		+		24398	12419	15443	15529	23463	23463					0.21643919384632682
PIKQLLLLLLL	11	Unmodified	_PIKQLLLLLLL_					0	0	0			REV__ENST00000373874.6_1_20:35220081-35220303:+|nuORF	REV__ENST00000373874.6_1_20:35220081-35220303:+|nuORF	MSMS	HCT116MG_D190212_S2	2	638.9535522460938	2	638.951967	1275.88938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.305	1	37.202	36.702	37.702	-0.10318								0	0	0	0.96208	1	13979	13979		0	0	1		+		24399	15195	15444	15530	23464	23464					0.26247179538131604
PIKRSGCL	8	Unmodified	_PIKRSGCL_					0	0	0			REV__ENSG00000170255|ENST00000526914|MRGPRX1	REV__ENSG00000170255|ENST00000526914|MRGPRX1	MSMS	HCT116MG_D190212_S4	4	437.2180480957031	2	437.25238	872.490207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.014	1	43.64	43.14	44.14	-0.37373								0	0	0	0.8837	1	16200	16200		6.3541	0	1		+		24400	13286	15445	15531	23465	23465					0.04886166090830102
PILAHHNLRL	10	Unmodified	_PILAHHNLRL_					0	0	0		ENST00000598377.2_2_19:53717324-53717516:+|nuORF	ENST00000598377.2_2_19:53717324-53717516:+|nuORF	ENST00000598377.2_2_19:53717324-53717516:+|nuORF	MSMS	HCT116MG_D190212_S1	1	395.2389831542969	3	395.24013	1182.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.287	1	20.287	19.787	20.787	0								0	0	0	0.95179	1	7082	7082		2.086	0	1				24401	9075	15446	15532	23466	23466					0.1145191099940348
PILEFFGEKFA	11	Unmodified	_PILEFFGEKFA_					0	0	0			REV__ENSG00000069869|ENST00000435532|NEDD4	REV__ENSG00000069869|ENST00000435532|NEDD4	MULTI-SECPEP	HCT116MG_D190212_S2	2	650.0584106445312	2	649.344989	1296.67542	0.64398	0.00041816	2.0118	0.0013063	2.6557	0.0017245	649.8479895190108	55.283	0.20311	55.095	54.968	55.171	-0.18797					5	3	2	0	0	0	0.36367	1	21282	21282		5.7319	2.1354	1	18830000	+		24402	10747	15447	15533	23467	23467					0.038954273714352894
PILEFFGEKFA	11	Unmodified	_PILEFFGEKFA_					0	0	0			REV__ENSG00000069869|ENST00000435532|NEDD4	REV__ENSG00000069869|ENST00000435532|NEDD4	MULTI-MATCH	HCT116MG_D190212_S1	1		2	649.344989	1296.67542	0.79541	0.00051649	1.9786	0.0012848	2.774	0.0018013	649.3462047691029	55.121	0.15289	55.121	54.994	55.146	0	0.012902	-1.761E-06	NaN	5.7319	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46213000	+		24403	10747	15447	15533							0.038954273714352894
PILEPALVKDF	11	Unmodified	_PILEPALVKDF_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MSMS	HCT116MG_D190212_S1	1	621.3618774414062	2	621.360639	1240.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.015	1	41.015	40.515	41.515	0								0	0	0	0.82946	1	15432	15432		29.082	7.5446	1		+		24404	13798	15448	15534	23468	23468					0.09600000405498577
PILFIIRKQQR	11	Unmodified	_PILFIIRKQQR_					0	0	0		ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6	ENST00000556423.1_1_14:71063310-71067354:-|nuORF	ENST00000556423.1_1_14:71063310-71067354:-|nuORF	MSMS	HCT116MG_D190212_S2	2	706.4486083984375	2	706.448446	1410.88234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.963	1	57.788	57.288	58.288	-0.17494								0	0	0	0.95023	1	22390	22390		6.2058	1.6769	1				24405	3258	15449	15535	23469	23469					0.19333259710265338
PILHYVLERR	10	Unmodified	_PILHYVLERR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	648.38037109375	2	648.382771	1294.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.297	1	50.947	50.447	51.447	-0.35028								0	0	0	0.95507	1	19087	19087		3.5965	0.31518	1				24406	4258;9506	15450	15536	23470	23470					0.11540449342351167
PILLVLRKLI	10	Unmodified	_PILLVLRKLI_					0	0	0			REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	393.23284912109375	3	393.284677	1176.8322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.876	1	58.711	58.211	59.211	-0.1653								0	0	0	0.97116	1	22764	22764		0	0	1		+		24407	17744	15451	15537	23471	23471					0.25085757052420377
PILVELLRM	9	Unmodified	_PILVELLRM_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4;ENST00000480171.7_1_2:159519375-159537186:+|nuORF;ENST00000483881.1_1_2:159519810-159523086:+|nuORF;ENST00000495123.5_1_2:159519810-159525751:+|nuORF	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MSMS	HCT116MG_D190212_S3	3	541.9163818359375	2	542.33337	1082.65219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.489	1	54.193	53.693	54.693	-0.29587								0	0	0	0.7676	1	20648	20648		9.3474	0	1				24408	3856	15452	15538	23472	23472					0.1141671005311764
PINEGYKKT	9	Unmodified	_PINEGYKKT_					0	0	0			REV__tr|U7SVM7|U7SVM7_FUSNUDUF5105domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01279PE=4SV=1	REV__tr|U7SVM7|U7SVM7_FUSNUDUF5105domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01279PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	525.2858276367188	2	525.284931	1048.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.191	1	38.811	38.311	39.311	-0.38055								0	0	0	0.38321	1	14391	14391		34.402	2.0962	1		+		24409	17844	15453	15539	23473	23473					0.03297439097673305
PINLPRSLREL	11	Unmodified	_PINLPRSLREL_					0	0	0		nc|ENSG00000126500|Q9NZU1-1|FLRT1;ENSG00000126500|ENST00000682287|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	MSMS	HCT116MG_D190212_S4	4	654.3914184570312	2	654.393336	1306.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.066	1	35.68	35.18	36.18	-0.38558								0	0	0	0.95113	1	13184	13184		5.7319	1.7875	1				24410	2939	15454	15540	23474	23474					0.1310041465123959
PIQAPPRLTT	10	Unmodified	_PIQAPPRLTT_					0	0	0			REV__DMTN|p.R122Gfs*109|1|0.24|ENSG00000158856|chr8:22069483-22069483|C/-|frameshift_variant	REV__DMTN|p.R122Gfs*109|1|0.24|ENSG00000158856|chr8:22069483-22069483|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	365.2171630859375	3	365.216991	1092.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.467	1	59.19	58.69	59.69	-0.27731								0	0	0	0.96377	1	22378	22378		0.69767	0	1		+		24411	10374	15455	15541	23475	23475					0.0865340725997612
PIQDTGYSPHY	11	Unmodified	_PIQDTGYSPHY_					0	0	0			REV__EXPH5|p.P345Qfs*45|1|0.43|ENSG00000110723|chr11:108514475-108514475|A/-|frameshift_variant	REV__EXPH5|p.P345Qfs*45|1|0.43|ENSG00000110723|chr11:108514475-108514475|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	639.2926635742188	2	639.293485	1276.57242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.713	1	31.339	30.839	31.839	-0.3735								0	0	0	0.92235	1	11521	11521		17.113	4.8722	1		+		24412	16801	15456	15542	23476	23476					-0.054806850871727875
PIQGSVLAEHL	11	Unmodified	_PIQGSVLAEHL_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	MSMS	HCT116MG_D190212_S3	3	582.3247680664062	2	582.324588	1162.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.3	1	26.151	25.651	26.651	-0.14924								0	0	0	0.93295	1	9429	9429		15.248	0.8431	1		+		24413	11018	15457	15543	23477	23477					0.059810860518155096
PIRCRCQLRFR	11	Unmodified	_PIRCRCQLRFR_					0	0	0		ENST00000579125.1_1_17:62776100-62776705:-|nuORF;ENST00000578036.5_1_17:62775732-62776705:-|nuORF	ENST00000579125.1_1_17:62776100-62776705:-|nuORF	ENST00000579125.1_1_17:62776100-62776705:-|nuORF	MSMS	HCT116MG_D190212_S4	4	724.3966064453125	2	724.397907	1446.78126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.719	1	41.342	40.842	41.842	-0.37637								0	0	0	0.95954	1	15308	15308		1.3295	0	1				24414	8939	15458	15544	23478	23478					0.0757416146423111
PIRELKKDPL	10	Unmodified	_PIRELKKDPL_					0	0	0			REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	REV__tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	604.8102416992188	2	604.871705	1207.72886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.29	1	50.94	50.44	51.44	-0.35028								0	0	0	0.95179	1	19084	19084		4.3292	0	1		+		24415	17932	15459	15545	23479	23479					0.13330224873948282
PIRHRYIRRE	10	Unmodified	_PIRHRYIRRE_					0	0	0			REV__ENSG00000198546|ENST00000361518|ZNF511	REV__ENSG00000198546|ENST00000361518|ZNF511	MSMS	HCT116MG_D190212_S3	3	698.0762939453125	2	698.407644	1394.80073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.081	1	32.796	32.296	33.296	-0.28511								0	0	0	0.95507	1	12142	12142		3.5965	0.8613	1		+		24416	14129	15460	15546	23480	23480					0.11912577071007036
PISAGMML	8	Unmodified	_PISAGMML_					0	0	0		tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	410.21044921875	2	410.208792	818.403032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.158	1	46.057	45.557	46.557	-0.1014								0	0	0	0.8837	1	17574	17574		6.3541	0	1				24417	18602	15461	15547	23481	23481					-0.013433761751002748
PISTERLPQP	10	Unmodified	_PISTERLPQP_					0	0	0			REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|31|1|anti-sense	REV__L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|31|1|anti-sense	MSMS	HCT116MG_D190212_S4	4	568.9903564453125	2	569.316763	1136.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.954	1	40.577	40.077	41.077	-0.37732								0	0	0	0.90475	1	15044	15044		14.838	4.7643	1		+		24418	16945	15462	15548	23482	23482					0.056127995347424076
PITDRAGTAGP	11	Unmodified	_PITDRAGTAGP_					0	0	0		ENST00000510193.1_1_4:2795979-2798201:+|nuORF	ENST00000510193.1_1_4:2795979-2798201:+|nuORF	ENST00000510193.1_1_4:2795979-2798201:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.8101806640625	2	528.277638	1054.54072	0.66558	0.00035161	-0.14353	-7.5826E-05	0.52205	0.00027579	528.7781009790394	52.131	0.20606	51.945	51.781	51.987	-0.18613					6	3	2	0	0	0	0.33676	1	19953	19953		29.082	23.785	1	12600000			24419	8492	15463	15549	23483	23483					0.015633669495173308
PITDYVDQQF	10	Unmodified	_PITDYVDQQF_					0	0	0		nc|ENSG00000284874|Q99719-2|SEPTIN5;ENSG00000184702|ENST00000455784|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	MULTI-MSMS	HCT116MG_D190212_S2	2	614.2935180664062	2	613.290411	1224.56627	0.42039	0.00025782	0.10605	6.5039E-05	0.52644	0.00032286	613.2903731642425	46.144	0.61769	46.043	45.812	46.43	-0.1014					42	11	4	0	0	0	0.72678	1	17700	17700		18.146	4.5315	1	637850000			24420	9670	15464	15550	23484	23484					-0.037032033187415436
PITNLRFIEMR	11	Unmodified	_PITNLRFIEMR_					0	0	0			REV__ENST00000585793.1_1_17:39914605-39919321:-|nuORF	REV__ENST00000585793.1_1_17:39914605-39919321:-|nuORF	MSMS	HCT116MG_D190212_S2	2	695.3445434570312	2	695.387197	1388.75984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.019	1	51.836	51.336	52.336	-0.18369								0	0	0	0.9387	1	19973	19973		12.241	6.0349	1		+		24421	13453	15465	15551	23485	23485					0.08101054916528483
PITNMHLRMFE	11	Unmodified	_PITNMHLRMFE_					0	0	0		nc|ENSG00000163864|Q96T66-3|NMNAT3;ENSG00000163864|ENST00000704800|NMNAT3	nc|ENSG00000163864|Q96T66-3|NMNAT3	nc|ENSG00000163864|Q96T66-3|NMNAT3	MSMS	HCT116MG_D190212_S1	1	694.8425903320312	2	694.844307	1387.67406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.249	1	41.249	40.749	41.749	0								0	0	0	0.95196	1	15527	15527		5.2969	0.39987	1				24422	4642	15466	15552	23486	23486					-0.0042685326066020934
PITQEFPPP	9	Unmodified	_PITQEFPPP_					0	0	0			REV__ENSG00000105996|ENST00000222718|HOXA2	REV__ENSG00000105996|ENST00000222718|HOXA2	MSMS	HCT116MG_D190212_S3	3	513.110107421875	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.592	1	23.552	23.052	24.052	-0.03968								0	0	0	0.50556	1	8337	8337		28.487	4.4663	1		+		24423	11282	15467	15553	23487	23487					0.011666516946434058
PITQEFPPP	9	Unmodified	_PITQEFPPP_					0	0	0			REV__ENSG00000105996|ENST00000222718|HOXA2	REV__ENSG00000105996|ENST00000222718|HOXA2	MSMS	HCT116MG_D190212_S3	3	513.2662963867188	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.691	1	23.643	23.143	24.143	-0.048803								0	0	0	0.3563	1	8377	8377		36.044	5.4077	1		+		24424	11282	15467	15553	23488	23488					0.011666516946434058
PIVAPFVE	8	Unmodified	_PIVAPFVE_					0	0	0			REV__ENSG00000154485|ENST00000368808|MMP21	REV__ENSG00000154485|ENST00000368808|MMP21	MSMS	HCT116MG_D190212_S4	4	436.2514343261719	2	436.249829	870.485105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.569	1	46.197	45.697	46.697	-0.37134								0	0	0	0.8837	1	17197	17197		2.5775	0	1		+		24425	12681	15468	15554	23489	23489					0.04468185499854371
PIVVGKEVLT	10	Unmodified	_PIVVGKEVLT_					0	0	0		PDE6C|p.A192T|1|0.33|ENSG00000095464|chr10:93620725-93620725|G/A|missense_variant	PDE6C|p.A192T|1|0.33|ENSG00000095464|chr10:93620725-93620725|G/A|missense_variant	PDE6C|p.A192T|1|0.33|ENSG00000095464|chr10:93620725-93620725|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	352.2232666015625	3	352.221742	1053.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.997	1	24.622	24.122	25.122	-0.37521								0	0	0	0.94698	1	8983	8983		5.4027	0.68679	1				24426	9737	15469	15555	23490	23490					0.11872059688266745
PKAAKRLFL	9	Unmodified	_PKAAKRLFL_					0	0	0			REV__B3GNT4|p.G150Afs*4|1|0.33|ENSG00000176383|chr12:122206697-122206697|G/-|frameshift_variant	REV__B3GNT4|p.G150Afs*4|1|0.33|ENSG00000176383|chr12:122206697-122206697|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	522.482666015625	2	522.339844	1042.66514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.292	1	49.977	49.477	50.477	-0.31525								0	0	0	0.7663	1	18961	18961		13.906	5.1606	1		+		24427	10026	15470	15556	23491	23491					0.14550909227500597
PKAEQAPTVKR	11	Unmodified	_PKAEQAPTVKR_					0	0	0		PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant;PCLO|p.P1234Afs*11|1|0.31|ENSG00000186472|chr7:82966089-82966090|-/T|frameshift_variant;PCLO|p.V1883Ffs*29|1|0.09|ENSG00000186472|chr7:82955307-82955307|T/-|frameshift_variant;PCLO|p.S1913Vfs*9|1|0.32|ENSG00000186472|chr7:82955216-82955216|T/-|frameshift_variant;PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant	PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant	PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	612.8562622070312	2	612.856586	1223.69862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.798	1	14.637	14.137	15.137	-0.16089								0	0	0	0.95772	1	4718	4718		2.2828	0.80087	1				24428	5887	15471	15557	23492	23492					0.09571866208739266
PKAKRTSRFLS	11	Unmodified	_PKAKRTSRFLS_					0	0	0		ENSG00000143228|ENST00000271452|NUF2;NUF2|p.I401Nfs*2|1|0.3|ENSG00000143228|chr1:163349015-163349016|-/A|frameshift_variant	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MSMS	HCT116MG_D190212_S2	2	645.7579345703125	2	645.885678	1289.7568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.483	1	50.311	49.811	50.811	-0.1719								0	0	0	0.95273	1	19348	19348		4.897	1.6157	1				24429	3793	15472	15558	23493	23493					0.123515478540412
PKAPKKTLLK	10	Unmodified	_PKAPKKTLLK_					0	0	0		EFHC1|p.D408Tfs*7|6|0.29|ENSG00000096093|chr6:52469410-52469410|A/-|frameshift_variant	EFHC1|p.D408Tfs*7|6|0.29|ENSG00000096093|chr6:52469410-52469410|A/-|frameshift_variant	EFHC1|p.D408Tfs*7|6|0.29|ENSG00000096093|chr6:52469410-52469410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	562.3783569335938	2	562.381709	1122.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.58	1	50.224	49.724	50.724	-0.35588								0	0	0	0.96453	1	18797	18797		1.4819	0	1				24430	759	15473	15559	23494	23494					0.1924002060454768
PKAWLQFPW	9	Unmodified	_PKAWLQFPW_					0	0	0		ENST00000550891.1_12:52056617-52056866:+|nuORF	ENST00000550891.1_12:52056617-52056866:+|nuORF	ENST00000550891.1_12:52056617-52056866:+|nuORF	MSMS	HCT116MG_D190212_S4	4	586.8154296875	2	586.816202	1171.61785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.615	1	50.26	49.76	50.76	-0.35483								0	0	0	0.76902	1	18811	18811		4.3292	0.73274	1				24431	8753	15474	15560	23495	23495					0.03890629956504199
PKCEYKCITGV	11	Unmodified	_PKCEYKCITGV_					0	0	0			REV__ENSG00000116183|ENST00000367662|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MSMS	HCT116MG_D190212_S4	4	620.8064575195312	2	620.806859	1239.59917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.491	1	53.156	52.656	53.656	-0.33473								0	0	0	0.95343	1	19973	19973		4.5289	0	1		+		24432	11577	15475	15561	23496	23496					-0.011050357918975351
PKCRSLFVLE	10	Unmodified	_PKCRSLFVLE_					0	0	0		ENST00000590307.1_1_18:77636237-77659813:+|nuORF;ENSG00000178342|ENST00000316249|KCNG2	ENST00000590307.1_1_18:77636237-77659813:+|nuORF	ENST00000590307.1_1_18:77636237-77659813:+|nuORF	MSMS	HCT116MG_D190212_S1	1	596.3336181640625	2	596.331359	1190.64816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.633	1	50.633	50.133	51.133	0								0	0	0	0.93466	1	19325	19325		8.1555	1.0538	1				24433	5497	15476	15562	23497	23497					0.06046620559391158
PKDFWDILNEQ	11	Unmodified	_PKDFWDILNEQ_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MSMS	HCT116MG_D190212_S1	1	702.8452758789062	2	702.843342	1403.67213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.817	1	17.817	17.317	18.317	0								0	0	0	0.94385	1	6087	6087		9.544	1.3884	1				24434	5657	15477	15563	23498	23498					-0.013558674732166764
PKEARKFFRQI	11	Unmodified	_PKEARKFFRQI_					0	0	0		nc|ENSG00000160469|Q8TDC3-3|BRSK1;BRSK2|p.R355Gfs*4|2|0.39|ENSG00000174672|chr11:1445650-1445650|C/-|frameshift_variant;nc|ENSG00000174672|Q8IWQ3-6|BRSK2;BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1	nc|ENSG00000160469|Q8TDC3-3|BRSK1	nc|ENSG00000160469|Q8TDC3-3|BRSK1	MSMS	HCT116MG_D190212_S1	1	710.2879028320312	2	710.414603	1418.81465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.327	1	36.327	35.827	36.827	0								0	0	0	0.95343	1	13539	13539		4.5289	3.3355	1				24435	280	15478	15564	23499	23499					0.12199809779463067
PKEARKFFRQI	11	Unmodified	_PKEARKFFRQI_					0	0	0		nc|ENSG00000160469|Q8TDC3-3|BRSK1;BRSK2|p.R355Gfs*4|2|0.39|ENSG00000174672|chr11:1445650-1445650|C/-|frameshift_variant;nc|ENSG00000174672|Q8IWQ3-6|BRSK2;BRSK2|p.P580Qfs*55|2|0.16|ENSG00000174672|chr11:1456410-1456410|G/-|frameshift_variant;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1	nc|ENSG00000160469|Q8TDC3-3|BRSK1	nc|ENSG00000160469|Q8TDC3-3|BRSK1	MSMS	HCT116MG_D190212_S2	2	710.8189697265625	2	710.414603	1418.81465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.176	1	38.083	37.583	38.583	-0.09301								0	0	0	0.95025	1	14334	14334		6.1918	1.2948	1				24436	280	15478	15564	23500	23500					0.12199809779463067
PKEEVQSSEDD	11	Unmodified	_PKEEVQSSEDD_					0	0	0		F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant;F5|p.G1754Efs*13|1|0.41|ENSG00000198734|chr1:169529768-169529768|T/-|frameshift_variant;ENSG00000198734|ENST00000367797|F5	F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	F5|p.S1606Pfs*5|1|0.07|ENSG00000198734|chr1:169536662-169536663|-/CTGAAGTGGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	631.8145141601562	2	631.772779	1261.53101	0.63424	0.0004007	-1.0219	-0.00064559	-0.38764	-0.0002449	631.7714177798503	44.957	0.41797	44.865	44.735	45.153	-0.092472					14	7	3	0	0	0	0.72792	1	17058	17058		11.495	0	1	17109000			24437	6261	15479	15565	23501	23501					-0.08929910637175453
PKFNLSSSI	9	Unmodified	_PKFNLSSSI_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1;NSD1|p.K1753Sfs*10|1|0.17|ENSG00000165671|chr5:177267669-177267669|A/-|frameshift_variant	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MSMS	HCT116MG_D190212_S1	1	496.7728271484375	2	496.7742	991.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.761	1	15.761	15.261	16.261	0								0	0	0	0.76849	1	5259	5259		6.2058	0.44535	1				24438	4788	15480	15566	23502	23502					0.0377405406896969
PKGARGTR	8	Unmodified	_PKGARGTR_					0	0	0		nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-MSMS	HCT116MG_D190212_S4	4	842.4966430664062	1	842.49551	841.488233	0.70543	0.00059432	0.37174	0.00031319	1.0772	0.00090751	842.4956486335332	42.145	1.2639	41.769	41.285	42.549	-0.37565					39	29	2	0	0	0	0.8672	1	15678	15678		2.3027	1.5091	1	3051800			24439	5201	15481	15567	23503	23503					0.061148733972345326
PKGARGTR	8	Unmodified	_PKGARGTR_					0	0	0		nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	842.49551	841.488233	0.96139	0.00080996	0.19614	0.00016525	1.1575	0.00097521	842.4957378245226	41.68	1.4492	41.68	40.986	42.435	0	-0.044727	-0.00010729	NaN	2.3027	35	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10575000			24440	5201	15481	15567							0.061148733972345326
PKGCVKCA	8	Unmodified	_PKGCVKCA_					0	0	0			REV__ZNF440|p.T180Pfs*13|1|0.32|ENSG00000171295|chr19:11831710-11831710|A/-|frameshift_variant	REV__ZNF440|p.T180Pfs*13|1|0.32|ENSG00000171295|chr19:11831710-11831710|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	403.20819091796875	2	403.206584	804.398615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.362	1	46.992	46.492	47.492	-0.37038								0	0	0	0.8837	1	17517	17517		4.756	2.1785	1		+		24441	18080	15482	15568	23504	23504					-0.011408405980205316
PKGELLKRV	9	Unmodified	_PKGELLKRV_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-5|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000557380.5_1_14:50298948-50312874:-|nuORF;NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MSMS	HCT116MG_D190212_S3	3	520.3328857421875	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.05	1	53.75	53.25	54.25	-0.29946								0	0	0	0.76973	1	20471	20471		1.8442	0	1				24442	4782	15483	15569	23505	23505					0.13718301502262875
PKGELLKRV	9	Unmodified	_PKGELLKRV_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-5|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000557380.5_1_14:50298948-50312874:-|nuORF;NEMF|p.K641Rfs*9|1|0.15|ENSG00000165525|chr14:49802721-49802721|T/-|frameshift_variant;NEMF|p.M879*|1|0.12|ENSG00000165525|chr14:49789558-49789558|T/-|frameshift_variant;NEMF|p.M879Nfs*10|1|0.13|ENSG00000165525|chr14:49789557-49789558|-/T|frameshift_variant	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MSMS	HCT116MG_D190212_S3	3	520.3328247070312	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.63	1	54.334	53.834	54.834	-0.29587								0	0	0	0.76973	1	20704	20704		1.8442	0	1				24443	4782	15483	15569	23506	23506					0.13718301502262875
PKGGPAAL	8	Unmodified	_PKGGPAAL_					0	0	0		ENSG00000178171|ENST00000321420|AMER3;AMER3|p.P204Rfs*62|1|0.17|ENSG00000178171|chr2:130762678-130762678|C/-|frameshift_variant	ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	MSMS	HCT116MG_D190212_S4	4	355.7118835449219	2	355.713414	709.412274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.927	1	46.556	46.056	47.056	-0.37051								0	0	0	0.8837	1	17341	17341		0.69038	0	1				24444	5490	15484	15570	23507	23507					0.04594476497072719
PKGGRGAR	8	Unmodified	_PKGGRGAR_					0	0	0		ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	ENST00000575531.5_1_16:4407102-4412712:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	399.2461242675781	2	399.738286	797.462019	-0.039888	-1.5945E-05	0.52016	0.00020793	0.48027	0.00019198	399.73834149920833	48.736	1.6907	48.369	47.47	49.161	-0.36715					50	40	2	0	0	0	0.33446	1	17752	17752		2.3027	0	1	16009000			24445	6633	15485	15571	23508	23508					0.055186042257560075
PKGGRKGG	8	Unmodified	_PKGGRKGG_					0	0	0		ENST00000512074.1_1_5:84845227-84845416:+|nuORF;ENSG00000106244|ENST00000350498|PDAP1	ENST00000512074.1_1_5:84845227-84845416:+|nuORF	ENST00000512074.1_1_5:84845227-84845416:+|nuORF	MSMS	HCT116MG_D190212_S4	4	378.7283020019531	2	378.727387	755.44022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.422	1	45.049	44.549	45.549	-0.37266								0	0	0	0.8837	1	16755	16755		0.69038	0	1				24446	2064	15486	15572	23509	23509					0.052717994771910526
PKGGRSFT	8	Unmodified	_PKGGRSFT_					0	0	0			REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	REV__tr|U7T3J3|U7T3J3_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00684PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	425.234130859375	2	425.232502	848.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.914	1	47.914	47.414	48.414	0								0	0	0	0.8837	1	18218	18218		4.756	0	1		+		24447	17950	15487	15573	23510	23510					0.020163624117685686
PKGIRGPPGL	10	Unmodified	_PKGIRGPPGL_					0	0	0		COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant;COL4A5|p.F1520Vfs*34|1|0.04|ENSG00000188153|chrX:108692794-108692795|-/GTAATAAATATACTATA|frameshift_variant;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000470339.1_1_X:107683355-107812096:+|nuORF;COL4A5|p.N306Mfs*40|1|0.34|ENSG00000188153|chrX:108581005-108581005|A/-|frameshift_variant	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	496.453857421875	2	496.306001	990.597449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.083	1	53.783	53.283	54.283	-0.29946								0	0	0	0.92272	1	20485	20485		10.824	0.64053	1				24448	525	15488	15574	23511	23511					0.10177459296698999
PKGKGTPE	8	Unmodified	_PKGKGTPE_					0	0	0			REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	MSMS	HCT116MG_D190212_S2	2	407.22662353515625	2	407.226885	812.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.761	1	27.419	26.919	27.919	-0.34201								0	0	0	0.8837	1	10098	10098		10.074	0.72649	1		+		24449	15150	15489	15575	23512	23512					0.025495403176137188
PKGKRGEK	8	Unmodified	_PKGKRGEK_					0	0	0		ENSG00000049089|ENST00000372748|COL9A2;ENST00000482722.5_1_1:40766856-40777859:-|nuORF	ENSG00000049089|ENST00000372748|COL9A2	ENSG00000049089|ENST00000372748|COL9A2	MULTI-MSMS	HCT116MG_D190212_S3	3	450.2746887207031	2	450.274701	898.534849	0.037543	1.6905E-05	0.22223	0.00010006	0.25977	0.00011697	450.27470473337695	50.81	1.4639	50.496	50.125	51.589	-0.31381					75	27	4	0	0	0	0.8672	1	19346	19346		2.3027	0	1	95915000			24450	1038	15490	15576	23513	23513					0.08152313228515595
PKGKRRGG	8	Unmodified	_PKGKRRGG_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENST00000555532.2_1_14:60864810-60864996:+|nuORF	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-MSMS	HCT116MG_D190212_S1	1	428.267333984375	2	428.26721	854.519868	0.14655	6.2763E-05	0.033281	1.4253E-05	0.17983	7.7016E-05	428.26719357466214	46.143	0.25901	46.143	45.975	46.234	0					7	4	2	0	0	0	0.87635	1	17511	17511		0.69038	0	1	17413000			24451	6645	15491	15577	23514	23514					0.08678866151183229
PKGKRRGG	8	Unmodified	_PKGKRRGG_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENST00000555532.2_1_14:60864810-60864996:+|nuORF	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	428.26721	854.519868	0.14655	6.2763E-05	0.033281	1.4253E-05	0.17983	7.7016E-05	428.26719357466214	46.143	0.25901	46.143	45.975	46.234	0	-0.13724	1.5953E-05	NaN	0.69038	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17413000			24452	6645	15491	15577							0.08678866151183229
PKGKRRGG	8	Unmodified	_PKGKRRGG_					0	0	0		ENSG00000265241|ENST00000583313|RBM8A;nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENST00000555532.2_1_14:60864810-60864996:+|nuORF	ENSG00000265241|ENST00000583313|RBM8A	ENSG00000265241|ENST00000583313|RBM8A	MULTI-MATCH	HCT116MG_D190212_S2	2		2	428.26721	854.519868	0.31592	0.0001353	-0.80783	-0.00034597	-0.49191	-0.00021067	428.26663531300414	46.529	0.25671	46.417	46.317	46.574	-0.11121	0.13724	-0.00070449	NaN	0.69038	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5781100			24453	6645	15491	15577							0.08678866151183229
PKGKVQLNVMY	11	Unmodified	_PKGKVQLNVMY_					0	0	0			REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	MSMS	HCT116MG_D190212_S1	1	638.5323486328125	2	638.857741	1275.70093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.682	1	23.682	23.182	24.182	0								0	0	0	0.94755	1	8445	8445		7.609	0.88579	1		+		24454	13419	15492	15578	23515	23515					0.07410578622193498
PKGLAAGP	8	Unmodified	_PKGLAAGP_					0	0	0		ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	MSMS	HCT116MG_D190212_S3	3	355.7119140625	2	355.713414	709.412274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.086	1	46.772	46.272	47.272	-0.31405								0	0	0	0.8837	1	17673	17673		2.5775	0	1				24455	3445	15493	15579	23516	23516					0.04594476497084088
PKGLRRYIQL	10	Unmodified	_PKGLRRYIQL_					0	0	0			REV__nc|ENSG00000066294|Q9UIB8-6|CD84	REV__nc|ENSG00000066294|Q9UIB8-6|CD84	MSMS	HCT116MG_D190212_S1	1	622.3848266601562	2	622.385314	1242.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.427	1	61.427	60.927	61.927	0								0	0	0	0.96453	1	23701	23701		1.4819	0.15237	1		+		24456	10715	15494	15580	23517	23517					0.14440753204985413
PKGMLLRFFV	10	Unmodified	_PKGMLLRFFV_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000525606.5_1_11:10819365-10820979:-|nuORF;ENST00000534470.1_1_11:10820460-10820850:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	MSMS	HCT116MG_D190212_S4	4	604.3530883789062	2	604.354637	1206.69472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.921	1	49.559	49.059	50.059	-0.36213								0	0	0	0.96453	1	18531	18531		1.4819	0	1				24457	2243;8652	15495	15581	23518	23518					0.09964105181325067
PKGPGPLA	8	Unmodified	_PKGPGPLA_					0	0	0			REV__ENST00000566665.1_1_16:10273773-10274277:-|nuORF	REV__ENST00000566665.1_1_16:10273773-10274277:-|nuORF	MSMS	HCT116MG_D190212_S1	1	368.71966552734375	2	368.721239	735.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.878	1	44.878	44.378	45.378	0								0	0	0	0.8837	1	16989	16989		0.69038	0	1		+		24458	16550	15496	15582	23519	23519					0.04962763014123084
PKGPGPLA	8	Unmodified	_PKGPGPLA_					0	0	0			REV__ENST00000566665.1_1_16:10273773-10274277:-|nuORF	REV__ENST00000566665.1_1_16:10273773-10274277:-|nuORF	MSMS	HCT116MG_D190212_S3	3	368.71942138671875	2	368.721239	735.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.68	1	45.369	44.869	45.869	-0.31094								0	0	0	0.8837	1	17110	17110		0.69038	0	1		+		24459	16550	15496	15582	23520	23520					0.04962763014123084
PKGPGPLA	8	Unmodified	_PKGPGPLA_					0	0	0			REV__ENST00000566665.1_1_16:10273773-10274277:-|nuORF	REV__ENST00000566665.1_1_16:10273773-10274277:-|nuORF	MSMS	HCT116MG_D190212_S4	4	368.7198181152344	2	368.721239	735.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.184	1	46.813	46.313	47.313	-0.37038								0	0	0	0.8837	1	17445	17445		0.69038	0	1		+		24460	16550	15496	15582	23521	23521					0.04962763014123084
PKGPNHKKL	9	Unmodified	_PKGPNHKKL_					0	0	0			REV__ENSG00000100403|ENST00000352645|ZC3H7B	REV__ENSG00000100403|ENST00000352645|ZC3H7B	MSMS	HCT116MG_D190212_S4	4	509.8128662109375	2	509.811451	1017.60835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.639	1	49.277	48.777	49.777	-0.36213								0	0	0	0.76902	1	18419	18419		4.3292	0	1		+		24461	11083	15497	15583	23522	23522					0.10024861670990504
PKGPPKVP	8	Unmodified	_PKGPPKVP_					0	0	0		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	MSMS	HCT116MG_D190212_S4	4	410.2575378417969	2	410.257988	818.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.631	1	50.277	49.777	50.777	-0.35483								0	0	0	0.8837	1	18818	18818		2.3027	0	1				24462	5580	15498	15584	23523	23523					0.0849131145660067
PKGPRSRA	8	Unmodified	_PKGPRSRA_					0	0	0		ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	434.7591552734375	2	434.759218	867.503883	0.35526	0.00015445	0.23471	0.00010204	0.58997	0.0002565	434.7592496014194	47.742	1.2815	47.61	47.067	48.348	-0.13281					58	24	5	0	0	0	0.85571	1	18347	18347		4.3292	0	1	1876999999.9999998			24463	7577	15499	15585	23524	23524					0.06483159914273529
PKGRGAQR	8	Unmodified	_PKGRGAQR_					0	0	0		ENSG00000130037|ENST00000252321|KCNA5;KCNA5|p.T569Pfs*15|1|0.32|ENSG00000130037|chr12:5045846-5045846|G/-|frameshift_variant	ENSG00000130037|ENST00000252321|KCNA5	ENSG00000130037|ENST00000252321|KCNA5	MULTI-MSMS	HCT116MG_D190212_S3	3	435.2563171386719	2	435.256843	868.499132	0.17082	7.4353E-05	-0.33998	-0.00014798	-0.16915	-7.3625E-05	435.2565729551207	54.997	0.41838	54.705	54.56	54.979	-0.2918					12	7	2	0	0	0	0.87635	1	20881	20881		0.69038	0	1	2319100			24464	3053	15500	15586	23525	23525					0.05962275771514669
PKGRGAQR	8	Unmodified	_PKGRGAQR_					0	0	0		ENSG00000130037|ENST00000252321|KCNA5;KCNA5|p.T569Pfs*15|1|0.32|ENSG00000130037|chr12:5045846-5045846|G/-|frameshift_variant	ENSG00000130037|ENST00000252321|KCNA5	ENSG00000130037|ENST00000252321|KCNA5	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	435.256843	868.499132	0.33995	0.00014796	0.088409	3.8481E-05	0.42836	0.00018645	435.2566695867649	55.094	0.46925	54.777	54.51	54.98	-0.31774	0.035624	0.0001257	NaN	0.69038	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6218700			24465	3053	15500	15586							0.05962275771514669
PKGRGPRT	8	Unmodified	_PKGRGPRT_					0	0	0			REV__ENST00000417565.5_1_1:84315685-84326616:-|nuORF	REV__ENST00000417565.5_1_1:84315685-84326616:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	434.75909423828125	2	434.759218	867.503883	0.18343	7.9747E-05	0.27578	0.0001199	0.45921	0.00019965	434.7592572336102	48.208	2.026	47.841	47.285	49.311	-0.36728					121	48	5	0	0	0	0.87635	1	17663	17663		0.69038	0	1	410900000	+		24466	15490	15501	15587	23526	23526					0.06483159914284897
PKGRQNERVVI	11	Unmodified	_PKGRQNERVVI_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.E1273*|1|0.29|ENSG00000144724|chr3:62281605-62281606|-/TGAACTGT|frameshift_variant;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant;ENST00000475012.5_1_3:62203523-62278979:+|nuORF	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	HCT116MG_D190212_S2	2	649.061279296875	2	648.38076	1294.74697	0.65764	0.0004264	-0.75542	-0.0004898	-0.097782	-6.34E-05	648.3801183279251	51.147	1.3999	50.969	50.132	51.532	-0.17869					41	26	2	0	0	0	0.74191	1	19370	19370		4.1895	1.1943	1	19750000			24467	3879	15502	15588	23527	23527					0.11138359848632717
PKGTAALP	8	Unmodified	_PKGTAALP_					0	0	0			REV__nc|ENSG00000100038|O95985-3|TOP3B	REV__nc|ENSG00000100038|O95985-3|TOP3B	MSMS	HCT116MG_D190212_S3	3	377.72552490234375	2	377.726521	753.438489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.466	1	48.15	47.65	48.65	-0.31596								0	0	0	0.8837	1	18229	18229		2.5775	0	1		+		24468	11061	15503	15589	23528	23528					0.05190745668551244
PKGTAALP	8	Unmodified	_PKGTAALP_					0	0	0			REV__nc|ENSG00000100038|O95985-3|TOP3B	REV__nc|ENSG00000100038|O95985-3|TOP3B	MSMS	HCT116MG_D190212_S4	4	377.7253723144531	2	377.726521	753.438489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.253	1	47.886	47.386	48.386	-0.36728								0	0	0	0.8837	1	17865	17865		2.5775	0	1		+		24469	11061	15503	15589	23529	23529					0.05190745668551244
PKGVASIL	8	Unmodified	_PKGVASIL_					0	0	0			REV__tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1	REV__tr|U7T3B7|U7T3B7_FUSNUBifunctionalproteinFolDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=folDPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	392.7485656738281	2	392.749996	783.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.638	1	53.307	52.807	53.807	-0.33119								0	0	0	0.8837	1	20032	20032		2.5775	0	1		+		24470	17940	15504	15590	23530	23530					0.08503605219709698
PKGVGSPL	8	Unmodified	_PKGVGSPL_					0	0	0		ENST00000568223.6_1_16:767979-768486:+|nuORF	ENST00000568223.6_1_16:767979-768486:+|nuORF	ENST00000568223.6_1_16:767979-768486:+|nuORF	MSMS	HCT116MG_D190212_S3	3	377.7250061035156	2	377.726521	753.438489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.072	1	38.771	38.271	39.271	-0.30137								0	0	0	0.8837	1	14495	14495		0.69038	0	1				24471	8872	15505	15591	23531	23531					0.05190745668551244
PKHIVGLM	8	Unmodified	_PKHIVGLM_					0	0	0			REV__ENSG00000104331|ENST00000262644|BPNT2	REV__ENSG00000104331|ENST00000262644|BPNT2	MULTI-MSMS	HCT116MG_D190212_S4	4	448.2667236328125	2	447.765123	893.515694	0.1735	7.7689E-05	-0.79413	-0.00035559	-0.62063	-0.0002779	447.7647440134181	49.769	0.82676	49.407	49.067	49.894	-0.36213					36	18	3	0	0	0	0.86388	1	18423	18423		2.8892	2.0956	1	16861000	+		24472	11209	15506	15592	23532	23532					0.06467640613243475
PKHLLLRSK	9	Unmodified	_PKHLLLRSK_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MSMS	HCT116MG_D190212_S4	4	546.354736328125	2	546.356025	1090.6975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.392	1	61.132	60.632	61.632	-0.2602								0	0	0	0.7701	1	23159	23159		0.52476	0	1				24473	4085	15507	15593	23533	23533					0.15577696630498394
PKINLIKLVKK	11	Unmodified	_PKINLIKLVKK_					0	0	0			REV__tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1	REV__tr|U7SMN1|U7SMN1_FUSNUCof-likehydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01756PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	647.4503784179688	2	647.452665	1292.89078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.084	1	43.777	43.277	44.277	-0.30734								0	0	0	0.96149	1	16469	16469		0.30703	0	1		+		24474	17728	15508	15594	23534	23534					0.2560481362684186
PKKDTHIIKH	10	Unmodified	_PKKDTHIIKH_					0	0	0			REV__nc|ENSG00000196268|Q6ZR52|ZNF493	REV__nc|ENSG00000196268|Q6ZR52|ZNF493	MSMS	HCT116MG_D190212_S3	3	608.9739990234375	2	608.861672	1215.70879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.868	1	50.554	50.054	51.054	-0.31381								0	0	0	0.95507	1	19193	19193		3.5965	0	1		+		24475	14014	15509	15595	23535	23535					0.10956473933993038
PKKEEIKKMI	10	Unmodified	_PKKEEIKKMI_					0	0	0		ENST00000493482.1_1_X:151997683-151998151:-|nuORF;ENSG00000147400|ENST00000370277|CETN2	ENST00000493482.1_1_X:151997683-151998151:-|nuORF	ENST00000493482.1_1_X:151997683-151998151:-|nuORF	MSMS	HCT116MG_D190212_S1	1	622.8311767578125	2	622.375766	1242.73698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.212	1	50.212	49.712	50.712	0								0	0	0	0.94551	1	19153	19153		5.7319	0	1				24476	3983	15510	15596	23536	23536					0.12532035799040386
PKKEISEPEVQ	11	Unmodified	_PKKEISEPEVQ_					0	0	0		ENST00000445478.6_1_17:74721761-74721815:-|nuORF	ENST00000445478.6_1_17:74721761-74721815:-|nuORF	ENST00000445478.6_1_17:74721761-74721815:-|nuORF	MSMS	HCT116MG_D190212_S2	2	642.3460693359375	2	642.345717	1282.67688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.988	1	34.83	34.33	35.33	-0.15834								0	0	0	0.91257	1	13036	13036		18.373	3.5348	1				24477	7948	15511	15597	23537	23537					0.046850166695321604
PKKEPENWEK	10	Unmodified	_PKKEPENWEK_					0	0	0		tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	tr|U7T0A5|U7T0A5_FUSNUDNApolymeraseIIIPolC-typeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polCPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	428.8912048339844	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.351	1	14.19	13.69	14.69	-0.16089								0	0	0	0.95631	1	4538	4538		3.3196	0.47636	1				24478	18546	15512	15598	23538	23538					0.020521672178801964
PKKKKDTKEKQ	11	Unmodified	_PKKKKDTKEKQ_					0	0	0			REV__AP3B1|p.E758Dfs*25|1|0.05|ENSG00000132842|chr5:78110330-78110331|-/GTTGTAATTGAAGGTAAATA|frameshift_variant	REV__AP3B1|p.E758Dfs*25|1|0.05|ENSG00000132842|chr5:78110330-78110331|-/GTTGTAATTGAAGGTAAATA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	679.41162109375	2	679.411726	1356.8089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.881	1	51.536	51.036	52.036	-0.34538								0	0	0	0.9598	1	19323	19323		1.1933	0	1		+		24479	9957	15513	15599	23539	23539					0.1447666647711685
PKKKKKKRRQK	11	Unmodified	_PKKKKKKRRQK_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MSMS	HCT116MG_D190212_S4	4	485.002197265625	3	485.003566	1451.98887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.77	1	50.415	49.915	50.915	-0.35483								0	0	0	0.9613	1	18874	18874		0.40827	0.31342	1				24480	4466	15514	15600	23540	23540					0.2809543499542997
PKKKKKLKP	9	Unmodified	_PKKKKKLKP_					0	0	0			REV__CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	REV__CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	547.8934326171875	2	547.892244	1093.76993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.371	1	51.192	50.692	51.692	-0.17868								0	0	0	0.76973	1	19709	19709		1.8442	0	1		+		24481	10170	15515	15601	23541	23541					0.22680030704100318
PKKKKNRKKEK	11	Unmodified	_PKKKKNRKKEK_					0	0	0			REV__REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	REV__REV1|p.T1079Pfs*12|1|0.42|ENSG00000135945|chr2:99403038-99403038|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	706.4661865234375	2	706.464627	1410.9147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.812	1	60.546	60.046	61.046	-0.26582								0	0	0	0.96024	1	22924	22924		0.96228	0.65524	1		+		24482	17467	15516	15602	23542	23542					0.22568047113259126
PKKKKPPRKKK	11	Unmodified	_PKKKKPPRKKK_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6;NCOA6|p.P1168Tfs*41|1|0.1|ENSG00000198646|chr20:34742754-34742755|-/T|frameshift_variant	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MSMS	HCT116MG_D190212_S2	2	681.9752807617188	2	681.974631	1361.93471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.402	1	39.324	38.824	39.824	-0.077835								0	0	0	0.96149	1	14828	14828		0.30703	0	1				24483	6248	15517	15603	23543	23543					0.2682184284385585
PKKLMFRRLKI	11	Unmodified	_PKKLMFRRLKI_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;ENST00000431180.5_1_3:47122459-47155398:-|nuORF	ENSG00000181555|ENST00000409792|SETD2;ENST00000431180.5_1_3:47122459-47155398:-|nuORF	ENST00000431180.5_1_3:47122459-47155398:-|nuORF	MSMS	HCT116MG_D190212_S3	3	715.4632568359375	2	715.463042	1428.91153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.817	1	62.594	62.094	63.094	-0.22315								0	0	0	0.96208	1	23996	23996		0	0	1				24484	5637;7853	15518	15604	23544	23544					0.2142308073489403
PKKMIYLV	8	Unmodified	_PKKMIYLV_					0	0	0			REV__ENST00000366554.2_1_1:241757348-241757720:-|nuORF	REV__ENST00000366554.2_1_1:241757348-241757720:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	496.30413818359375	2	496.304081	990.59361	0.44576	0.00022123	-0.23633	-0.00011729	0.20943	0.00010394	496.3038895044579	53.221	1.1975	52.886	52.15	53.348	-0.33473					51	22	3	0	0	0	0.8506	1	19738	19738		5.2307	0	1	8685400	+		24485	15104	15519	15605	23545	23545					0.09793653478629949
PKKMIYLV	8	Unmodified	_PKKMIYLV_					0	0	0			REV__ENST00000366554.2_1_1:241757348-241757720:-|nuORF	REV__ENST00000366554.2_1_1:241757348-241757720:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	496.30389404296875	2	496.304081	990.59361	0.47035	0.00023344	-0.65797	-0.00032655	-0.18761	-9.3113E-05	496.30359447886	54.101	0.72891	53.772	53.353	54.082	-0.32923					21	13	2	0	0	0	0.8672	1	20059	20059		2.3027	0	1	3248800	+		24486	15104	15519	15605	23546	23546					0.09793653478629949
PKKMKLLL	8	Unmodified	_PKKMKLLL_					0	0	0		CHST4|p.V94Gfs*4|1|0.25|ENSG00000140835|chr16:71536958-71536958|T/-|frameshift_variant;ENSG00000140835|ENST00000539698|CHST4	CHST4|p.V94Gfs*4|1|0.25|ENSG00000140835|chr16:71536958-71536958|T/-|frameshift_variant	CHST4|p.V94Gfs*4|1|0.25|ENSG00000140835|chr16:71536958-71536958|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	485.8280334472656	2	485.827724	969.640894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.923	1	51.578	51.078	52.078	-0.34538								0	0	0	0.8837	1	19340	19340		4.756	2.4533	1				24487	461	15520	15606	23547	23547					0.15485932749629683
PKKMKNLRL	9	Unmodified	_PKKMKNLRL_					0	0	0			REV__ENST00000378611.8_1_16:81095673-81097523:-|nuORF	REV__ENST00000378611.8_1_16:81095673-81097523:-|nuORF	MSMS	HCT116MG_D190212_S3	3	564.0072631835938	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.657	1	53.357	52.857	53.857	-0.29946								0	0	0	0.76913	1	20313	20313		3.9444	0.3479	1		+		24488	15249	15521	15607	23548	23548					0.14258623412865745
PKKPGNPSRAR	11	Unmodified	_PKKPGNPSRAR_					0	0	0		ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	MSMS	HCT116MG_D190212_S1	1	604.35400390625	2	604.354545	1206.69454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.439	1	50.439	49.939	50.939	0								0	0	0	0.94269	1	19246	19246		10.151	3.9448	1				24489	3209	15522	15608	23549	23549					0.09945821505698405
PKKPSPSRS	9	Unmodified	_PKKPSPSRS_					0	0	0			REV__nc|ENSG00000177679|A6NNA2|SRRM3	REV__nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-MSMS	HCT116MG_D190212_S3	3	492.28558349609375	2	492.285266	982.555979	0.15284	7.5239E-05	0.28999	0.00014276	0.44283	0.000218	492.28532977530483	51.41	0.78613	51.099	50.753	51.539	-0.31166					31	14	3	0	0	0	0.67781	1	19384	19384		6.7232	3.8339	1	9075600	+		24490	13581	15523	15609	23550	23550					0.06400278537375925
PKKPSPSRS	9	Unmodified	_PKKPSPSRS_					0	0	0			REV__nc|ENSG00000177679|A6NNA2|SRRM3	REV__nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-MSMS	HCT116MG_D190212_S4	4	492.28515625	2	492.285266	982.555979	0.1364	6.7146E-05	0.21045	0.0001036	0.34685	0.00017075	492.28530767893034	51.327	0.98841	50.977	50.629	51.618	-0.35028					46	18	3	0	0	0	0.71898	1	19050	19050		3.9444	0.3479	1	19940000	+		24491	13581	15523	15609	23551	23551					0.06400278537375925
PKKQRKRT	8	Unmodified	_PKKQRKRT_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MSMS	HCT116MG_D190212_S3	3	521.619384765625	2	521.335624	1040.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.224	1	50.913	50.413	51.413	-0.31166								0	0	0	0.8837	1	19336	19336		4.756	0	1				24492	1183	15524	15610	23552	23552					0.13799355310879946
PKKRFFLKW	9	Unmodified	_PKKRFFLKW_					0	0	0			REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	MSMS	HCT116MG_D190212_S4	4	625.3818969726562	2	625.382043	1248.74953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.484	1	53.149	52.649	53.649	-0.33473								0	0	0	0.76973	1	19970	19970		1.8442	0	1		+		24493	15828	15525	15611	23553	23553					0.13510860044266337
PKKRKGRPP	9	Unmodified	_PKKRKGRPP_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MSMS	HCT116MG_D190212_S2	2	355.23248291015625	3	355.233087	1062.67743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.643	1	40.573	40.073	41.073	-0.069626								0	0	0	0.76995	1	15333	15333		1.0715	0.3738	1				24494	1793	15526	15612	23554	23554					0.14859945690568566
PKKRKTRLPK	10	Unmodified	_PKKRKTRLPK_					0	0	0			REV__EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	REV__EVC|p.V948Cfs*22|1|0.07|ENSG00000072840|chr4:5810394-5810394|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	626.4244995117188	2	626.422231	1250.82991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.408	1	15.081	14.581	15.581	-0.32684								0	0	0	0.94339	1	5117	5117		6.2058	2.6093	1		+		24495	10782	15527	15613	23555	23555					0.21452721367290906
PKKRRRKIHRM	11	Unmodified	_PKKRRRKIHRM_					0	0	0		nc|ENSG00000136960|Q13822-2|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	nc|ENSG00000136960|Q13822-2|ENPP2	MSMS	HCT116MG_D190212_S1	1	753.4742431640625	2	753.475338	1504.93612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.094	1	40.094	39.594	40.594	0								0	0	0	0.96149	1	15060	15060		0.30703	0	1				24496	9471	15528	15614	23556	23556					0.20385153660959077
PKKRRRRARR	10	Unmodified	_PKKRRRRARR_					0	0	0			REV__ENST00000585362.6_3_19:1104424-1105401:+|nuORF	REV__ENST00000585362.6_3_19:1104424-1105401:+|nuORF	MSMS	HCT116MG_D190212_S3	3	690.4567260742188	2	690.455794	1378.89703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.757	1	53.457	52.957	53.957	-0.29946								0	0	0	0.96937	1	20353	20353		0.40072	0.050084	1		+		24497	16648	15529	15615	23557	23557					0.2227418942161421
PKKTAKSKKK	10	Unmodified	_PKKTAKSKKK_					0	0	0		ENSG00000025796|ENST00000369002|SEC63;ENST00000425785.1_1_1:98011504-98011909:+|nuORF	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MSMS	HCT116MG_D190212_S4	4	572.3810424804688	2	572.38224	1142.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.973	1	52.633	52.133	53.133	-0.34023								0	0	0	0.95507	1	19764	19764		3.5965	0	1				24498	956	15530	15616	23558	23558					0.18426234973458122
PKKTKIKLT	9	Unmodified	_PKKTKIKLT_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MSMS	HCT116MG_D190212_S1	1	352.9093017578125	3	352.909498	1055.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.857	1	11.857	11.357	12.357	0								0	0	0	0.77018	1	3768	3768		0.26902	0	1				24499	4834	15531	15617	23559	23559					0.18104045196173502
PKKTKIKLT	9	Unmodified	_PKKTKIKLT_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MSMS	HCT116MG_D190212_S1	1	352.9091796875	3	352.909498	1055.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.402	1	12.402	11.902	12.902	0								0	0	0	0.77018	1	3977	3977		0.26902	0	1				24500	4834	15531	15617	23560	23560					0.18104045196173502
PKKTKIKLT	9	Unmodified	_PKKTKIKLT_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MSMS	HCT116MG_D190212_S1	1	352.9093322753906	3	352.909498	1055.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.026	1	13.026	12.526	13.526	0								0	0	0	0.77018	1	4211	4211		0.26902	0	1				24501	4834	15531	15617	23561	23561					0.18104045196173502
PKKTPPRK	8	Unmodified	_PKKTPPRK_					0	0	0		ENST00000475924.5_1_22:39064059-39064179:+|nuORF;ENST00000467118.1_1_22:39064011-39066786:+|nuORF;ENST00000489847.1_1_22:39052727-39066786:+|nuORF;ENST00000485501.5_1_22:39052673-39067032:+|nuORF;ENSG00000100211|ENST00000216029|CBY1;ENST00000492537.5_1_22:39052727-39067259:+|nuORF;ENST00000492576.5_1_22:39052705-39067032:+|nuORF	ENST00000475924.5_1_22:39064059-39064179:+|nuORF	ENST00000475924.5_1_22:39064059-39064179:+|nuORF	MSMS	HCT116MG_D190212_S3	3	476.3064880371094	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.271	1	51.962	51.462	52.462	-0.30927								0	0	0	0.8837	1	19756	19756		8.5933	3.3626	1				24502	1675	15532	15618	23562	23562					0.12525763159328562
PKKVAAPDLPF	11	Unmodified	_PKKVAAPDLPF_					0	0	0			REV__HLX|p.V211Cfs*17|1|0.32|ENSG00000136630|chr1:220881229-220881229|G/-|frameshift_variant	REV__HLX|p.V211Cfs*17|1|0.32|ENSG00000136630|chr1:220881229-220881229|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	591.8899536132812	2	591.847699	1181.68084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.53	1	50.359	49.859	50.859	-0.1719								0	0	0	0.94385	1	19367	19367		9.544	0.79857	1		+		24503	12138	15533	15619	23563	23563					0.09727150953881392
PKKVTPVKKV	10	Unmodified	_PKKVTPVKKV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	562.3796997070312	2	562.381709	1122.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.283	1	50.933	50.433	51.433	-0.35028								0	0	0	0.96453	1	19081	19081		1.4819	0	1		+		24504	12706	15534	15620	23564	23564					0.1924002060454768
PKKWRLWIS	9	Unmodified	_PKKWRLWIS_					0	0	0			REV__IGDCC4|p.L859*|1|0.23|ENSG00000103742|chr15:65388940-65388940|G/-|frameshift_variant	REV__IGDCC4|p.L859*|1|0.23|ENSG00000103742|chr15:65388940-65388940|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	405.2457580566406	3	405.244992	1212.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.461	1	48.317	47.817	48.817	-0.1437								0	0	0	0.76973	1	18515	18515		0.96228	0.26461	1		+		24505	11204	15535	15621	23565	23565					0.11529983147556777
PKLKDWHPP	9	Unmodified	_PKLKDWHPP_					0	0	0		ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK	ENSG00000142892|ENST00000370812|PIGK	ENSG00000142892|ENST00000370812|PIGK	MSMS	HCT116MG_D190212_S2	2	559.30908203125	2	559.311284	1116.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.691	1	24.311	23.811	24.811	-0.38003								0	0	0	0.76781	1	8859	8859		8.5933	1.304	1				24506	3779	15536	15622	23566	23566					0.054374419511077576
PKLKIFMA	8	Unmodified	_PKLKIFMA_					0	0	0		RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant;ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	474.5732727050781	2	474.290974	946.567395	0.3857	0.00018293	-0.19433	-9.217E-05	0.19137	9.0764E-05	474.2908133608152	52.095	1.4535	51.75	50.895	52.348	-0.34538					46	27	2	0	0	0	0.86564	2	19531	19531;19644		2.5775	1.7838	1	16668000			24507	5707	15537	15623	23567;23568	23567					0.09197384307151424
PKLKKRKKK	9	Unmodified	_PKLKKRKKK_					0	0	0			REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF	REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	HCT116MG_D190212_S4	4	577.4088134765625	2	577.416417	1152.81828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.836	1	53.507	53.007	54.007	-0.32923								0	0	0	0.7696	1	20112	20112		3.9444	2.1002	1		+		24508	14508	15538	15624	23569	23569					0.24798524343964345
PKLKKRKKKR	10	Unmodified	_PKLKKRKKKR_					0	0	0			REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF	REV__ENST00000216190.12_1_22:36906978-36907630:-|nuORF	MSMS	HCT116MG_D190212_S1	1	655.341796875	2	655.466973	1308.91939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.607	1	15.607	15.107	16.107	0								0	0	0	0.96937	1	5197	5197		0.40072	0	1		+		24509	14508	15539	15625	23570	23570					0.27728976046660136
PKLKRLTSRRH	11	Unmodified	_PKLKRLTSRRH_					0	0	0			REV__ENSG00000143318|ENST00000368078|CASQ1	REV__ENSG00000143318|ENST00000368078|CASQ1	MSMS	HCT116MG_D190212_S3	3	696.4380493164062	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.235	1	62.003	61.503	62.503	-0.23129								0	0	0	0.96149	1	23770	23770		0.30703	0	1		+		24510	12382	15540	15626	23571	23571					0.18353723139171052
PKLKRRCY	8	Unmodified	_PKLKRRCY_					0	0	0			REV__ENST00000329235.6_1_X:15845452-15863518:-|nuORF	REV__ENST00000329235.6_1_X:15845452-15863518:-|nuORF	MSMS	HCT116MG_D190212_S2	2	355.238037109375	3	355.211294	1062.61205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.753	1	58.588	58.088	59.088	-0.1653								0	0	0	0.8837	1	22714	22714		0.45834	0.057624	1		+		24511	14923	15541	15627	23572	23572					0.08325208173187093
PKLLLRLPLIL	11	Unmodified	_PKLLLRLPLIL_					0	0	0			REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant	REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	430.30670166015625	3	430.307481	1287.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.747	1	14.747	14.247	15.247	0								0	0	0	0.96208	1	4850	4850		0	0	1		+		24512	17372	15542	15628	23573	23573					0.2681800163227308
PKLLLRLPLIL	11	Unmodified	_PKLLLRLPLIL_					0	0	0			REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant	REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	645.0405883789062	2	644.957584	1287.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.132	1	40.059	39.559	40.559	-0.072838								0	0	0	0.95954	1	15126	15126		1.3295	0.9789	1		+		24513	17372	15542	15628	23574	23574					0.2681800163227308
PKLLLRLPLIL	11	Unmodified	_PKLLLRLPLIL_					0	0	0			REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant	REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	430.55950927734375	3	430.307481	1287.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.358	1	13.427	12.927	13.927	0.069158								0	0	0	0.96208	1	4230	4230		0	0	1		+		24514	17372	15542	15628	23575	23575					0.2681800163227308
PKLLLRLPLIL	11	Unmodified	_PKLLLRLPLIL_					0	0	0			REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant	REV__OR51F1|p.L169R|1|0.16|ENSG00000280021|chr11:4769433-4769433|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	430.3070373535156	3	430.307481	1287.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.293	1	14.373	13.873	14.873	0.079683								0	0	0	0.96208	1	4590	4590		0	0	1		+		24515	17372	15542	15628	23576	23576					0.2681800163227308
PKLLLVRKRLL	11	Unmodified	_PKLLLVRKRLL_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MSMS	HCT116MG_D190212_S1	1	674.978759765625	2	674.979382	1347.94421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.698	1	16.698	16.198	17.198	0								0	0	0	0.96149	1	5637	5637		0.30703	0.30703	1				24516	4118	15543	15629	23577	23577					0.28415611129412355
PKMPDLVVMW	10	Unmodified	_PKMPDLVVMW_					0	0	0			REV__ENSG00000110013|ENST00000263593|SIAE	REV__ENSG00000110013|ENST00000263593|SIAE	MSMS	HCT116MG_D190212_S2	2	608.3153076171875	2	608.316863	1214.61917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.439	1	22.054	21.554	22.554	-0.3852								0	0	0	0.94107	1	7949	7949		6.7232	1.8262	1		+		24517	11388	15544	15630	23578	23578					0.020447599387352966
PKNVPRIK	8	Unmodified	_PKNVPRIK_					0	0	0		BFSP1|p.R373I|1|0.1|ENSG00000125864|chr20:17494954-17494954|C/A|missense_variant	BFSP1|p.R373I|1|0.1|ENSG00000125864|chr20:17494954-17494954|C/A|missense_variant	BFSP1|p.R373I|1|0.1|ENSG00000125864|chr20:17494954-17494954|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	476.30670166015625	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.951	1	52.645	52.145	53.145	-0.30609								0	0	0	0.8837	1	20029	20029		2.3027	0	1				24518	263	15545	15631	23579	23579					0.12525763159317194
PKPASRAAEA	10	Unmodified	_PKPASRAAEA_					0	0	0			REV__ENSG00000145888|ENST00000274576|GLRA1	REV__ENSG00000145888|ENST00000274576|GLRA1	MSMS	HCT116MG_D190212_S4	4	499.2748107910156	2	499.274898	996.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.115	1	46.745	46.245	47.245	-0.37038								0	0	0	0.92917	1	17417	17417		9.3831	0	1		+		24519	12466	15546	15632	23580	23580					0.03683688157695997
PKPGGPHA	8	Unmodified	_PKPGGPHA_					0	0	0			REV__ENSG00000215012|ENST00000328554|RTL10	REV__ENSG00000215012|ENST00000328554|RTL10	MSMS	HCT116MG_D190212_S1	1	380.7080383300781	2	380.708663	759.402772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.914	1	40.914	40.414	41.414	0								0	0	0	0.8837	1	15392	15392		2.5775	0	1		+		24520	14276	15547	15633	23581	23581					0.013447082115590092
PKPGLRPLIY	10	Unmodified	_PKPGLRPLIY_					0	0	0			REV__ENST00000333172.10_1_1:6639007-6639235:+|nuORF	REV__ENST00000333172.10_1_1:6639007-6639235:+|nuORF	MSMS	HCT116MG_D190212_S1	1	577.3594970703125	2	577.358234	1152.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.824	1	50.824	50.324	51.324	0								0	0	0	0.96377	1	19402	19402		1.6526	0.17072	1		+		24521	14940	15548	15634	23582	23582					0.13167161053411292
PKPINRPFL	9	Unmodified	_PKPINRPFL_					0	0	0		ENST00000558825.5_1_15:91337395-91358506:+|nuORF;ENSG00000197299|ENST00000355112|BLM;ENST00000560821.1_1_15:91352032-91358506:+|nuORF	ENST00000558825.5_1_15:91337395-91358506:+|nuORF	ENST00000558825.5_1_15:91337395-91358506:+|nuORF	MSMS	HCT116MG_D190212_S2	2	361.2204284667969	3	361.222076	1080.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.256	1	17.897	17.397	18.397	-0.3584								0	0	0	0.76897	1	6263	6263		4.5289	0	1				24522	6134	15549	15635	23583	23583					0.1073031884784541
PKPPAVLFL	9	Unmodified	_PKPPAVLFL_					0	0	0			REV__ENST00000503574.1_1_4:109541889-109541958:+|nuORF	REV__ENST00000503574.1_1_4:109541889-109541958:+|nuORF	MSMS	HCT116MG_D190212_S1	1	491.3089599609375	2	491.310221	980.605889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.896	1	61.896	61.396	62.396	0								0	0	0	0.7696	1	23891	23891		2.3027	1.5091	1		+		24523	16126	15550	15636	23584	23584					0.11481013213312963
PKPRWTHAPCP	11	Unmodified	_PKPRWTHAPCP_					0	0	0		ENST00000506052.1_1_17:48539604-48540054:+|nuORF	ENST00000506052.1_1_17:48539604-48540054:+|nuORF	ENST00000506052.1_1_17:48539604-48540054:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	645.3319702148438	2	645.332224	1288.6499	-0.13641	-8.8028E-05	0.615	0.00039688	0.47859	0.00030885	645.3325676908318	15.337	0.32789	15.176	14.978	15.305	-0.16173					14	6	3	0	0	0	0.74191	1	4909	4909		4.1895	4.1895	1	2195800			24524	8458	15551	15637	23585	23585					0.01711674368016247
PKPVRKKPG	9	Unmodified	_PKPVRKKPG_					0	0	0			REV__CBX8|p.G73V|1|0.69|ENSG00000141570|chr17:79796085-79796085|C/A|missense_variant	REV__CBX8|p.G73V|1|0.69|ENSG00000141570|chr17:79796085-79796085|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1006.654052734375	1	1006.65201	1005.64473	0.65165	0.00065599	0.4151	0.00041786	1.0668	0.0010738	1006.6522743920176	60.656	0.82562	60.508	60.115	60.941	-0.14852					28	15	2	0	0	0	0.74917	1	23644	23644		1.8442	1.1539	1	32432000	+		24525	10104	15552	15638	23586	23586					0.14213738567707423
PKQAPALSMT	10	Unmodified	_PKQAPALSMT_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MSMS	HCT116MG_D190212_S1	1	522.2828979492188	2	522.281334	1042.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.352	1	21.352	20.852	21.852	0								0	0	0	0.92917	1	7507	7507		9.3831	0.78985	1				24526	6081	15553	15639	23587	23587					0.02854383225599122
PKQIKRKQKRK	11	Unmodified	_PKQIKRKQKRK_					0	0	0		ENST00000459737.5_1_14:56078878-56079043:+|nuORF	ENST00000459737.5_1_14:56078878-56079043:+|nuORF	ENST00000459737.5_1_14:56078878-56079043:+|nuORF	MSMS	HCT116MG_D190212_S2	2	719.2808837890625	2	719.478069	1436.94158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.142	1	37.035	36.535	37.535	-0.10623								0	0	0	0.95686	1	13912	13912		2.7352	2.3846	1				24527	8038	15554	15640	23588	23588					0.24059155724421544
PKQKKKKKRKR	11	Unmodified	_PKQKKKKKRKR_					0	0	0		PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant	PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant	PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	485.33905029296875	3	485.003566	1451.98887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.142	1	12.977	12.477	13.477	-0.16496								0	0	0	0.96192	1	4110	4110		0.08335	0.08335	1				24528	9746	15555	15641	23589	23589					0.2809543499542997
PKQKYKIYTK	10	Unmodified	_PKQKYKIYTK_					0	0	0		RPAP2|p.S120Y|1|0.07|ENSG00000122484|chr1:92304309-92304309|C/A|missense_variant	RPAP2|p.S120Y|1|0.07|ENSG00000122484|chr1:92304309-92304309|C/A|missense_variant	RPAP2|p.S120Y|1|0.07|ENSG00000122484|chr1:92304309-92304309|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	648.8871459960938	2	648.887355	1295.76016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.903	1	23.903	23.403	24.403	0								0	0	0	0.92917	1	8534	8534		9.3831	0.63772	1				24529	18122	15556	15642	23590	23590					0.12410797908023596
PKQLPFHPP	9	Unmodified	_PKQLPFHPP_					0	0	0		ENST00000564162.1_1_16:28847389-28848098:+|nuORF	ENST00000564162.1_1_16:28847389-28848098:+|nuORF	ENST00000564162.1_1_16:28847389-28848098:+|nuORF	MSMS	HCT116MG_D190212_S1	1	354.2023620605469	3	354.202793	1059.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.439	1	28.439	27.939	28.939	0								0	0	0	0.76948	1	10359	10359		2.7352	1.0826	1				24530	8843	15557	15643	23591	23591					0.05914056922438249
PKQMTRPRAW	10	Unmodified	_PKQMTRPRAW_					0	0	0			REV__ENST00000310389.5_1_5:175798851-175799073:+|nuORF	REV__ENST00000310389.5_1_5:175798851-175799073:+|nuORF	MSMS	HCT116MG_D190212_S1	1	635.84765625	2	635.845499	1269.67644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.33	1	40.33	39.83	40.83	0								0	0	0	0.92607	1	15155	15155		10.074	1.9184	1		+		24531	14828	15558	15644	23592	23592					0.05239363259352103
PKQQLYAWRCV	11	Unmodified	_PKQQLYAWRCV_					0	0	0			REV__nc|ENSG00000087116|O95450-2|ADAMTS2	REV__nc|ENSG00000087116|O95450-2|ADAMTS2	MSMS	HCT116MG_D190212_S3	3	696.3689575195312	2	696.366264	1390.71798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.737	1	23.675	23.175	24.175	-0.061449								0	0	0	0.95113	1	8395	8395		5.7319	0	1		+		24532	17084	15559	15645	23593	23593					0.03824499227994238
PKQQMLVDLH	10	Unmodified	_PKQQMLVDLH_					0	0	0			REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	604.8251953125	2	604.82644	1207.63833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.749	1	15.415	14.915	15.915	-0.33451								0	0	0	0.94339	1	5254	5254		6.2058	0.9089	1		+		24533	13795	15560	15646	23594	23594					0.04281432554012099
PKQSDRSPGP	10	Unmodified	_PKQSDRSPGP_					0	0	0			REV__ENSG00000169857|ENST00000306730|AVEN	REV__ENSG00000169857|ENST00000306730|AVEN	MSMS	HCT116MG_D190212_S2	2	534.7106323242188	2	534.775262	1067.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.392	1	15.065	14.565	15.565	-0.32684								0	0	0	0.94339	1	5110	5110		6.2058	0.44535	1		+		24534	13265	15561	15647	23595	23595					0.004904828067765266
PKQVSAYNMAN	11	Unmodified	_PKQVSAYNMAN_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;ENST00000493546.1_1_X:153697446-153699024:+|nuORF	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MSMS	HCT116MG_D190212_S2	2	611.3291625976562	2	611.79788	1221.58121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.828	1	39.755	39.255	40.255	-0.072838								0	0	0	0.94851	1	15003	15003		7.1017	2.2047	1				24535	3110	15562	15648	23596	23596					-0.020720347223459612
PKRARRKLY	9	Unmodified	_PKRARRKLY_					0	0	0		KIF20B|p.K1777R|1|0.31|ENSG00000138182|chr10:89772776-89772776|A/G|missense_variant	KIF20B|p.K1777R|1|0.31|ENSG00000138182|chr10:89772776-89772776|A/G|missense_variant	KIF20B|p.K1777R|1|0.31|ENSG00000138182|chr10:89772776-89772776|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	594.3766479492188	2	594.377823	1186.74109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.891	1	60.742	60.242	61.242	-0.14852								0	0	0	0.7701	1	23576	23576		0.52476	0	1				24536	9263	15563	15649	23597	23597					0.15519306127657728
PKRGRRKTK	9	Unmodified	_PKRGRRKTK_					0	0	0			REV__ENST00000305366.7_1_3:149095174-149095441:-|nuORF	REV__ENST00000305366.7_1_3:149095174-149095441:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	376.2113952636719	3	376.247507	1125.72069	0.10897	4.1E-05	-1.1412	-0.00042939	-1.0323	-0.00038839	376.2468958970985	54.416	0.41692	54.093	53.879	54.296	-0.32349					10	7	2	0	0	0	0.27037	1	20262	20262		0.96228	0.80295	1	1340500	+		24537	14806	15564	15650	23598	23598					0.16286135467817076
PKRGRRWR	8	Unmodified	_PKRGRRWR_					0	0	0		ENST00000293261.7_1_19:48867285-48867390:-|nuORF	ENST00000293261.7_1_19:48867285-48867390:-|nuORF	ENST00000293261.7_1_19:48867285-48867390:-|nuORF	MSMS	HCT116MG_D190212_S3	3	371.2275390625	3	371.228447	1110.66351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.587	1	43.28	42.78	43.78	-0.30616								0	0	0	0.8837	1	16268	16268		0.40072	0.1317	1				24538	6964	15565	15651	23599	23599					0.1126071298210718
PKRKASRS	8	Unmodified	_PKRKASRS_					0	0	0			REV__ENSG00000008086|ENST00000623535|CDKL5	REV__ENSG00000008086|ENST00000623535|CDKL5	MULTI-MSMS	HCT116MG_D190212_S2	2	465.28564453125	2	465.2856	928.556647	0.24877	0.00011575	0.18042	8.3945E-05	0.42918	0.00019969	465.28562066616314	50.496	1.5537	50.325	50.036	51.59	-0.1719					33	29	2	0	0	0	0.83605	1	19376	19376		7.2892	0	1	26017000	+		24539	10499	15566	15652	23600	23600					0.08951117977085232
PKRKASRS	8	Unmodified	_PKRKASRS_					0	0	0			REV__ENSG00000008086|ENST00000623535|CDKL5	REV__ENSG00000008086|ENST00000623535|CDKL5	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	465.2856	928.556647	0.24877	0.00011575	0.18042	8.3945E-05	0.42918	0.00019969	465.28562066616314	50.496	1.5537	50.325	50.036	51.59	-0.1719	0.042306	3.8792E-05	NaN	7.2892	33	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26017000	+		24540	10499	15566	15652							0.08951117977085232
PKRKKKKKKKK	11	Unmodified	_PKRKKKKKKKK_					0	0	0			REV__ENST00000340726.7_1_8:72274331-72274436:-|nuORF	REV__ENST00000340726.7_1_8:72274331-72274436:-|nuORF	MSMS	HCT116MG_D190212_S3	3	713.0194091796875	2	713.01683	1424.01911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.339	1	10.379	9.8786	10.879	0.039975								0	0	0	0.96149	1	3129	3129		0.30703	0	1		+		24541	14967	15567	15653	23601	23601					0.3240579366060956
PKRKKRKKKR	10	Unmodified	_PKRKKRKKKR_					0	0	0		ENST00000357337.10_1_13:77671591-77671720:-|nuORF	ENST00000357337.10_1_13:77671591-77671720:-|nuORF	ENST00000357337.10_1_13:77671591-77671720:-|nuORF	MSMS	HCT116MG_D190212_S1	1	676.5460815429688	2	676.975496	1351.93644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.166	1	15.166	14.666	15.666	0								0	0	0	0.96937	1	5019	5019		0.40072	0.050084	1				24542	7308	15568	15654	23602	23602					0.2745489665246623
PKRKPVPEQPQ	11	Unmodified	_PKRKPVPEQPQ_					0	0	0			REV__MYT1L|p.A72V|1|0.25|ENSG00000186487|chr2:1943272-1943272|G/A|missense_variant	REV__MYT1L|p.A72V|1|0.25|ENSG00000186487|chr2:1943272-1943272|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	652.3755493164062	2	652.377686	1302.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.273	1	39.972	39.472	40.472	-0.30157								0	0	0	0.95343	1	14946	14946		4.5289	1.2476	1		+		24543	17054	15569	15655	23603	23603					0.10155841617142869
PKRKRGRPP	9	Unmodified	_PKRKRGRPP_					0	0	0		PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant;ENSG00000080603|ENST00000262518|SRCAP	PHF20|p.L826Cfs*62|1|0.3|ENSG00000025293|chr20:35938869-35938869|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	546.3485717773438	2	546.349066	1090.68358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.059	1	44.749	44.249	45.249	-0.30927								0	0	0	0.76967	1	16860	16860		2.0598	0.21551	1				24544	954;1397	15570	15656	23604	23604					0.1418646392210121
PKRPSTVS	8	Unmodified	_PKRPSTVS_					0	0	0			REV__REV3L|p.N1694Mfs*4|2|0.16|ENSG00000009413|chr6:111373274-111373274|T/-|frameshift_variant	REV__REV3L|p.N1694Mfs*4|2|0.16|ENSG00000009413|chr6:111373274-111373274|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	436.2543029785156	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.129	1	58.851	58.351	59.351	-0.27731								0	0	0	0.8837	1	22243	22243		2.3027	0.24298	1		+		24545	10506	15571	15657	23605	23605					0.05188918100293449
PKRRDILAIV	10	Unmodified	_PKRRDILAIV_					0	0	0		ENSG00000109956|ENST00000312527|B3GAT1;nc|ENSG00000109956|Q9P2W7-2|B3GAT1	ENSG00000109956|ENST00000312527|B3GAT1	ENSG00000109956|ENST00000312527|B3GAT1	MSMS	HCT116MG_D190212_S1	1	394.2541809082031	3	394.255669	1179.74518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.791	1	42.791	42.291	43.291	0								0	0	0	0.95631	1	16149	16149		3.3196	0.82116	1				24546	2227	15572	15658	23606	23606					0.16249350830685216
PKRRKLLE	8	Unmodified	_PKRRKLLE_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MSMS	HCT116MG_D190212_S1	1	520.3405151367188	2	520.340375	1038.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.104	1	59.104	58.604	59.604	0								0	0	0	0.8837	1	22783	22783		0.6015	0	1				24547	1238	15573	15659	23607	23607					0.14841123596397665
PKRRRRRKRRG	11	Unmodified	_PKRRRRRKRRG_					0	0	0			REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant	REV__LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	508.0021667480469	3	508.001442	1520.9825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.141	1	50.786	50.286	51.286	-0.35483								0	0	0	0.96192	1	19024	19024		0.08335	0.08335	1		+		24548	12003	15574	15660	23608	23608					0.24284354607266323
PKRRRSRQR	9	Unmodified	_PKRRRSRQR_					0	0	0			REV__ENST00000599531.1_1_19:46996416-46996824:-|nuORF	REV__ENST00000599531.1_1_19:46996416-46996824:-|nuORF	MSMS	HCT116MG_D190212_S2	2	620.385009765625	2	620.384503	1238.75445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.536	1	53.347	52.847	53.847	-0.1894								0	0	0	0.76973	1	20591	20591		1.8442	0.36234	1		+		24549	16742	15575	15661	23609	23609					0.1446255695959735
PKSFRGWNYYE	11	Unmodified	_PKSFRGWNYYE_					0	0	0			REV__ENST00000490586.1_1_7:73634828-73639069:+|nuORF	REV__ENST00000490586.1_1_7:73634828-73639069:+|nuORF	MSMS	HCT116MG_D190212_S3	3	482.8390808105469	3	482.89821	1445.6728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.176	1	49.861	49.361	50.361	-0.31525								0	0	0	0.95954	1	18914	18914		1.3296	0.11481	1		+		24550	10938	15576	15662	23610	23610					-0.03221028033522089
PKSRLRRRWPR	11	Unmodified	_PKSRLRRRWPR_					0	0	0			REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	REV__ENST00000487247.5_1_7:75612754-75613000:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	754.4644165039062	2	754.463284	1506.91202	0.71414	0.00053879	0.21579	0.00016281	0.92993	0.0007016	754.4633985476606	61.045	1.5514	61.045	60.749	62.3	0					53	29	3	0	0	0	0.74191	1	23569	23569		0.30703	0	1	18870000	+		24551	16003	15577	15663	23611	23611					0.1788363649893654
PKTCKRKTIIT	11	Unmodified	_PKTCKRKTIIT_					0	0	0		ENST00000503148.1_1_4:164438551-164440663:+|nuORF;ENSG00000198498|ENST00000358572|TMA16	ENST00000503148.1_1_4:164438551-164440663:+|nuORF	ENST00000503148.1_1_4:164438551-164440663:+|nuORF	MSMS	HCT116MG_D190212_S4	4	430.2649841308594	3	430.263835	1287.76968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.8	1	37.417	36.917	37.917	-0.38283								0	0	0	0.96014	1	13849	13849		1.0136	0.60531	1				24552	6234	15578	15664	23612	23612					0.1373024292190621
PKTCKRKTIIT	11	Unmodified	_PKTCKRKTIIT_					0	0	0		ENST00000503148.1_1_4:164438551-164440663:+|nuORF;ENSG00000198498|ENST00000358572|TMA16	ENST00000503148.1_1_4:164438551-164440663:+|nuORF	ENST00000503148.1_1_4:164438551-164440663:+|nuORF	MSMS	HCT116MG_D190212_S4	4	430.26519775390625	3	430.263835	1287.76968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.012	1	37.629	37.129	38.129	-0.38283								0	0	0	0.96014	1	13916	13916		1.0136	0.31591	1				24553	6234	15578	15664	23613	23613					0.1373024292190621
PKTCKRKTIIT	11	Unmodified	_PKTCKRKTIIT_					0	0	0		ENST00000503148.1_1_4:164438551-164440663:+|nuORF;ENSG00000198498|ENST00000358572|TMA16	ENST00000503148.1_1_4:164438551-164440663:+|nuORF	ENST00000503148.1_1_4:164438551-164440663:+|nuORF	MSMS	HCT116MG_D190212_S4	4	430.2643127441406	3	430.263835	1287.76968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.378	1	37.996	37.496	38.496	-0.38242								0	0	0	0.96014	1	14063	14063		1.0136	0.31591	1				24554	6234	15578	15664	23614	23614					0.1373024292190621
PKTEQKRP	8	Unmodified	_PKTEQKRP_					0	0	0		ENST00000498426.5_1_1:196227442-196227487:-|nuORF	ENST00000498426.5_1_1:196227442-196227487:-|nuORF	ENST00000498426.5_1_1:196227442-196227487:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2852478027344	2	492.285266	982.555979	0.29949	0.00014744	0.21715	0.0001069	0.51664	0.00025433	492.2852399396175	50.645	1.0906	50.473	50.191	51.282	-0.1719					49	20	3	0	0	0	0.83605	1	19629	19629		7.2892	0.56607	1	77918000			24555	8411	15579	15665	23615	23615					0.06400278537364557
PKTFVGRIIY	10	Unmodified	_PKTFVGRIIY_					0	0	0			REV__nc|ENSG00000147394|O15231-4|ZNF185	REV__nc|ENSG00000147394|O15231-4|ZNF185	MULTI-MSMS	HCT116MG_D190212_S2	2	597.3594360351562	2	597.355691	1192.69683	0.52575	0.00031406	2.2208	0.0013266	2.7466	0.0016407	597.358517669858	53.306	0.87817	53.117	52.809	53.687	-0.18922					30	16	3	0	0	0	0.87059	1	20477	20477		5.7319	1.4026	1	13709000	+		24556	12512	15580	15666	23616	23616					0.10818857190815834
PKTGKLRTS	9	Unmodified	_PKTGKLRTS_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant;ENSG00000100325|ENST00000307790|ASCC2;ASCC2|p.D46Tfs*6|1|0.12|ENSG00000100325|chr22:29825730-29825730|A/-|frameshift_variant;ASCC2|p.V106Ifs*7|1|0.07|ENSG00000100325|chr22:29825182-29825183|-/TGAT|frameshift_variant;ENST00000465667.6_1_22:30218318-30228314:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	MULTI-MSMS	HCT116MG_D190212_S3	3	494.30096435546875	2	494.300916	986.587279	0.38185	0.00018875	0.042998	2.1254E-05	0.42485	0.00021	494.3008722578366	52.887	0.88877	52.581	52.195	53.084	-0.3064					38	16	3	0	0	0	0.71898	1	19948	19948		3.9444	0	1	14109000			24557	199	15581	15667	23617	23617					0.09344851571484014
PKTGKLRTS	9	Unmodified	_PKTGKLRTS_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant;ENSG00000100325|ENST00000307790|ASCC2;ASCC2|p.D46Tfs*6|1|0.12|ENSG00000100325|chr22:29825730-29825730|A/-|frameshift_variant;ASCC2|p.V106Ifs*7|1|0.07|ENSG00000100325|chr22:29825182-29825183|-/TGAT|frameshift_variant;ENST00000465667.6_1_22:30218318-30228314:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	MULTI-MSMS	HCT116MG_D190212_S4	4	494.3011169433594	2	494.300916	986.587279	0.31839	0.00015738	0.27753	0.00013718	0.59592	0.00029456	494.3009405162313	52.921	1.1975	52.581	52.145	53.342	-0.34023					67	22	4	0	0	0	0.71898	1	19852	19852		3.9444	0	1	48456000			24558	199	15581	15667	23618	23618					0.09344851571484014
PKTGLRKPP	9	Unmodified	_PKTGLRKPP_					0	0	0		ENST00000503427.5_1_5:149412128-149416205:+|nuORF	ENST00000503427.5_1_5:149412128-149416205:+|nuORF	ENST00000503427.5_1_5:149412128-149416205:+|nuORF	MSMS	HCT116MG_D190212_S4	4	497.3120422363281	2	497.313826	992.613099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.923	1	48.558	48.058	49.058	-0.365								0	0	0	0.76932	1	18129	18129		3.2813	0.70383	1				24559	8435	15582	15668	23619	23619					0.1164974581373599
PKTGPTLRK	9	Unmodified	_PKTGPTLRK_					0	0	0		ENSG00000122033|ENST00000381120|MTIF3	ENSG00000122033|ENST00000381120|MTIF3	ENSG00000122033|ENST00000381120|MTIF3	MSMS	HCT116MG_D190212_S3	3	499.25445556640625	2	499.311284	996.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.816	1	53.517	53.017	54.017	-0.29946								0	0	0	0.76849	1	20377	20377		6.2058	2.2614	1				24560	2747	15583	15669	23620	23620					0.1095744195114321
PKTILQPYL	9	Unmodified	_PKTILQPYL_					0	0	0			REV__PLBD1|p.N214Tfs*4|1|0.06|ENSG00000121316|chr12:14536628-14536628|T/-|frameshift_variant	REV__PLBD1|p.N214Tfs*4|1|0.06|ENSG00000121316|chr12:14536628-14536628|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	536.8165283203125	2	536.823692	1071.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.359	1	55.173	54.673	55.673	-0.1868								0	0	0	0.768	1	21338	21338		7.9102	0.62092	1		+		24561	11714	15584	15670	23621	23621					0.09988077033835907
PKTKKGHSSA	10	Unmodified	_PKTKKGHSSA_					0	0	0			REV__ENSG00000099956|ENST00000644036|SMARCB1	REV__ENSG00000099956|ENST00000644036|SMARCB1	MULTI-MSMS	HCT116MG_D190212_S1	1	520.6605224609375	2	520.795998	1039.57744	0.26596	0.00013851	-0.15538	-8.0921E-05	0.11058	5.759E-05	521.2973682403415	50.009	0.25735	50.009	49.853	50.111	0					7	4	2	0	0	0	0.85279	1	19079	19079		7.609	1.8485	1	6731600	+		24562	11051	15585	15671	23622	23622					0.05923663566090909
PKTKKGRKRI	10	Unmodified	_PKTKKGRKRI_					0	0	0			REV__ENST00000529500.1_1_11:47447261-47447800:-|nuORF	REV__ENST00000529500.1_1_11:47447261-47447800:-|nuORF	MSMS	HCT116MG_D190212_S2	2	606.4063720703125	2	606.406581	1210.79861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.028	1	56.849	56.349	57.349	-0.17904								0	0	0	0.96453	1	22012	22012		1.4819	0.8804	1		+		24563	16299	15586	15672	23623	23623					0.201641483332196
PKTKKIAKIKI	11	Unmodified	_PKTKKIAKIKI_					0	0	0		tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	tr|U7SFW0|U7SFW0_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02253PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	634.442626953125	2	634.44484	1266.87513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.193	1	50.841	50.341	51.341	-0.35211								0	0	0	0.96003	1	19045	19045		1.0715	0.61312	1				24564	18294	15587	15673	23624	23624					0.2523652710983697
PKTKNVRN	8	Unmodified	_PKTKNVRN_					0	0	0			REV__FGF14|p.K188N|1|0.1|ENSG00000102466|chr13:101726655-101726655|C/A|missense_variant	REV__FGF14|p.K188N|1|0.1|ENSG00000102466|chr13:101726655-101726655|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	479.2648010253906	2	478.785433	955.556313	0.018714	8.9599E-06	0.065435	3.133E-05	0.084149	4.0289E-05	478.785330943384	51.211	0.67065	51.211	50.73	51.4	0					20	12	3	0	0	0	0.85329	1	19471	19471		4.756	0	1	47161000	+		24565	16820	15588	15674	23625	23625					0.0767569825721921
PKTKRKRERWH	11	Unmodified	_PKTKRKRERWH_					0	0	0			REV__ENST00000376896.7_1_9:77112538-77112712:+|nuORF	REV__ENST00000376896.7_1_9:77112538-77112712:+|nuORF	MSMS	HCT116MG_D190212_S3	3	507.7810363769531	3	507.967292	1520.88005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.676	1	49.36	48.86	49.86	-0.31596								0	0	0	0.96031	1	18713	18713		0.92553	0.83069	1		+		24566	15229	15589	15675	23626	23626					0.1404422402513319
PKTKRMKRH	9	Unmodified	_PKTKRMKRH_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MSMS	HCT116MG_D190212_S4	4	591.143798828125	2	591.356034	1180.69751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.643	1	53.312	52.812	53.812	-0.33069								0	0	0	0.76913	1	20034	20034		3.9444	0.3479	1		+		24567	17332	15590	15676	23627	23627					0.1143937335884857
PKTKRPRGR	9	Unmodified	_PKTKRPRGR_					0	0	0			REV__BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	REV__BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	548.3463745117188	2	548.346523	1094.67849	0.35608	0.00019526	-0.78468	-0.00043028	-0.4286	-0.00023502	548.3459766874868	50.089	0.56684	50.089	49.905	50.472	0					25	10	3	0	0	0	0.71898	1	19093	19093		3.9444	3.9444	1	127320000	+		24568	10033	15591	15677	23628	23628					0.1349416005944022
PKTKRSKSRK	10	Unmodified	_PKTKRSKSRK_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MSMS	HCT116MG_D190212_S1	1	608.3856201171875	2	608.385845	1214.75714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.679	1	47.679	47.179	48.179	0								0	0	0	0.96453	1	18122	18122		1.4819	0	1		+		24569	13325	15592	15678	23629	23629					0.15834967573869108
PKTKRSKSRK	10	Unmodified	_PKTKRSKSRK_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MSMS	HCT116MG_D190212_S3	3	608.385498046875	2	608.385845	1214.75714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.473	1	53.17	52.67	53.67	-0.30305								0	0	0	0.95776	1	20239	20239		2.9952	0.26005	1		+		24570	13325	15592	15678	23630	23630					0.15834967573869108
PKTLHKRPLVQ	11	Unmodified	_PKTLHKRPLVQ_					0	0	0			REV__ENST00000454784.8_2_12:40953042-40955390:+|nuORF	REV__ENST00000454784.8_2_12:40953042-40955390:+|nuORF	MSMS	HCT116MG_D190212_S2	2	439.60821533203125	3	439.610223	1315.80884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.201	1	53.011	52.511	53.511	-0.18922								0	0	0	0.95778	1	20453	20453		2.2527	0.51045	1		+		24571	15739	15593	15679	23631	23631					0.16356711267781066
PKTLHTSR	8	Unmodified	_PKTLHTSR_					0	0	0		ENST00000474975.1_1_2:165578616-165578718:-|nuORF	ENST00000474975.1_1_2:165578616-165578718:-|nuORF	ENST00000474975.1_1_2:165578616-165578718:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2715759277344	2	470.272158	938.529764	-0.085286	-4.0108E-05	-0.076855	-3.6143E-05	-0.16214	-7.625E-05	470.27204004746613	49.774	0.81888	49.61	49.38	50.199	-0.16369					38	15	3	0	0	0	0.81191	1	19278	19278		10.074	1.4806	1	186360000			24572	8195	15594	15680	23632	23632					0.058040093658974
PKTLHTSR	8	Unmodified	_PKTLHTSR_					0	0	0		ENST00000474975.1_1_2:165578616-165578718:-|nuORF	ENST00000474975.1_1_2:165578616-165578718:-|nuORF	ENST00000474975.1_1_2:165578616-165578718:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	469.77862548828125	2	470.272158	938.529764	0.068743	3.2328E-05	0.12947	6.0887E-05	0.19822	9.3215E-05	470.27209490782786	50.377	0.8797	50.018	49.637	50.517	-0.35878					39	16	3	0	0	0	0.32291	1	18869	18869		7.2892	0	1	61136000			24573	8195	15594	15680	23633	23633					0.058040093658974
PKTLRNLQR	9	Unmodified	_PKTLRNLQR_					0	0	0		nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7;nc|ENSG00000165891|Q96AV8-2|E2F7;E2F7|p.P729Lfs*53|1|0.24|ENSG00000165891|chr12:77025937-77025937|G/-|frameshift_variant;ENST00000551558.1_1_12:77439797-77459307:-|nuORF	nc|ENSG00000165891|Q96AV8-3|E2F7	nc|ENSG00000165891|Q96AV8-3|E2F7	MSMS	HCT116MG_D190212_S4	4	563.751708984375	2	563.346189	1124.67783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.528	1	50.169	49.669	50.669	-0.35878								0	0	0	0.76913	1	18776	18776		3.9444	0.66309	1				24574	4805	15595	15681	23634	23634					0.12047320619740276
PKTLRVWKMY	10	Unmodified	_PKTLRVWKMY_					0	0	0			REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MSMS	HCT116MG_D190212_S1	1	441.2525329589844	3	441.253159	1320.73765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.757	1	49.757	49.257	50.257	0								0	0	0	0.95844	1	18968	18968		2.8433	0.21205	1		+		24575	12465	15596	15682	23635	23635					0.09010875238755034
PKTPTKLRV	9	Unmodified	_PKTPTKLRV_					0	0	0			REV__nc|ENSG00000183495|Q96L91-3|EP400	REV__nc|ENSG00000183495|Q96L91-3|EP400	MSMS	HCT116MG_D190212_S3	3	520.3199462890625	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.83	1	49.515	49.015	50.015	-0.31525								0	0	0	0.71946	1	18775	18775		18.146	1.9972	1		+		24576	13765	15597	15683	23636	23636					0.13718301502285613
PKTQKEKRKSP	11	Unmodified	_PKTQKEKRKSP_					0	0	0		VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.I1913*|1|0.3|ENSG00000132549|chr8:99642246-99642246|A/-|frameshift_variant;ENST00000496144.5_1_8:100515159-100589873:+|nuORF	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	663.8958740234375	2	663.896243	1325.77793	0.64588	0.0004288	-1.4041	-0.00093219	-0.75824	-0.00050339	663.8949697927878	49.569	0.25835	49.569	49.44	49.699	0					7	4	2	0	0	0	0.74191	1	18903	18903		2.7352	0.23671	1	16449000			24577	3192	15598	15684	23637	23637					0.12807513162874784
PKTRRLWI	8	Unmodified	_PKTRRLWI_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	HCT116MG_D190212_S1	1	535.3348388671875	2	535.335093	1068.65563	0.30017	0.00016069	0.66091	0.00035381	0.96108	0.0005145	535.335433645109	61.203	0.8796	61.203	60.952	61.832	0					26	16	2	0	0	0	0.8672	1	23618	23618		2.3027	0	1	8308900	+		24578	11448	15599	15685	23638	23638					0.12405140941996251
PKTRRPRPGKR	11	Unmodified	_PKTRRPRPGKR_					0	0	0			REV__ENST00000361690.7_1_6:35856682-35888302:-|nuORF	REV__ENST00000361690.7_1_6:35856682-35888302:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	675.4276733398438	2	674.923461	1347.83237	0.63785	0.0004305	1.0511	0.00070944	1.689	0.0011399	674.9239097892394	60.883	2.0171	60.883	60.387	62.404	0					62	38	2	0	0	0	0.74191	1	23640	23640		1.0715	0.72083	1	21415000	+		24579	15098	15600	15686	23639	23639					0.17236569824945036
PKTSFIAAKGT	11	Unmodified	_PKTSFIAAKGT_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MSMS	HCT116MG_D190212_S4	4	560.8190307617188	2	560.821681	1119.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.954	1	49.594	49.094	50.094	-0.36006								0	0	0	0.93456	1	18544	18544		14.405	8.1996	1				24580	3422	15601	15687	23640	23640					0.07377987540121467
PKTTGVTTL	9	Unmodified	_PKTTGVTTL_					0	0	0			REV__ENSG00000100167|ENST00000644076|SEPTIN3	REV__ENSG00000100167|ENST00000644076|SEPTIN3	MULTI-MSMS	HCT116MG_D190212_S4	4	459.2673645019531	2	459.26875	916.522947	0.27404	0.00012586	-2.4966	-0.0011466	-2.2225	-0.0010207	459.26734752817305	46.881	0.71687	46.51	46.226	46.943	-0.37134					14	13	2	0	0	0	0.71898	1	17320	17320		3.9444	0	1	2461600	+		24581	11069	15602	15688	23641	23641					0.061346516946514384
PKTTSRRK	8	Unmodified	_PKTTSRRK_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	MULTI-MSMS	HCT116MG_D190212_S1	1	487.29840087890625	2	487.298707	972.582862	0.21771	0.00010609	-0.14207	-6.9231E-05	0.075637	3.6858E-05	487.2987010550641	49.415	1.4979	49.415	48.819	50.317	0					55	28	2	0	0	0	0.83605	1	19166	19166		7.2892	1.5574	1	9455200000	+		24582	13387	15603	15689	23642	23642					0.09547387148563757
PKTTSRRK	8	Unmodified	_PKTTSRRK_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	MULTI-MSMS	HCT116MG_D190212_S1	1	487.29931640625	2	487.298707	972.582862	0.12766	6.2208E-05	0.05721	2.7878E-05	0.18487	9.0087E-05	487.2986104915638	51.216	0.8716	51.216	50.678	51.549	0					27	16	3	0	0	0	0.85329	1	19493	19493		4.756	0	1	82426000	+		24583	13387	15603	15689	23643	23643					0.09547387148563757
PKTTSRRK	8	Unmodified	_PKTTSRRK_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	487.298707	972.582862	0.12766	6.2208E-05	0.05721	2.7878E-05	0.18487	9.0087E-05	487.2986104915638	51.216	0.8716	51.216	50.678	51.549	0	-0.018917	8.5042E-06	NaN	4.756	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82426000	+		24584	13387	15603	15689							0.09547387148563757
PKTTSRRK	8	Unmodified	_PKTTSRRK_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	487.298707	972.582862	0.21761	0.00010604	0.031021	1.5116E-05	0.24863	0.00012116	487.2986227919209	51.433	0.87589	51.254	50.758	51.634	-0.17921	0.018917	-1.702E-05	NaN	4.756	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16817000	+		24585	13387	15603	15689							0.09547387148563757
PKVKTFLRWWQ	11	Unmodified	_PKVKTFLRWWQ_					0	0	0			REV__SYNDIG1-MYH9|1|fusion;REV__nc|ENSG00000133392|P35749-4|MYH11;REV__MYH14|p.R929Gfs*44|1|0.38|ENSG00000105357|chr19:50268237-50268237|G/-|frameshift_variant	REV__SYNDIG1-MYH9|1|fusion	MSMS	HCT116MG_D190212_S3	3	496.954345703125	3	496.95399	1487.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.736	1	50.422	49.922	50.922	-0.31381								0	0	0	0.9613	1	19139	19139		0.40827	0	1		+		24586	11078;12028;11248	15604	15690	23644	23644					0.11573284301857711
PKVLLPKHVI	10	Unmodified	_PKVLLPKHVI_					0	0	0		ENST00000392253.2_1_2:202276919-202277543:-|nuORF	ENST00000392253.2_1_2:202276919-202277543:-|nuORF	ENST00000392253.2_1_2:202276919-202277543:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	573.0609741210938	2	572.384251	1142.75395	0.39406	0.00022555	0.67859	0.00038842	1.0726	0.00061397	572.8843113891294	50.328	0.31327	50.013	49.914	50.228	-0.31525					7	5	2	0	0	0	0.31042	1	18959	18959		6.2058	4.8763	1	5961900			24587	7608	15605	15691	23645	23645					0.18828324467176571
PKVMCLKDY	9	Unmodified	_PKVMCLKDY_					0	0	0		NTNG2|p.R45C|1|0.23|ENSG00000196358|chr9:132166964-132166964|C/T|missense_variant	NTNG2|p.R45C|1|0.23|ENSG00000196358|chr9:132166964-132166964|C/T|missense_variant	NTNG2|p.R45C|1|0.23|ENSG00000196358|chr9:132166964-132166964|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	549.7835083007812	2	548.780113	1095.54567	0.36198	0.00019865	-0.66188	-0.00036322	-0.29989	-0.00016458	548.7793827881413	25.485	0.5721	25.115	24.822	25.394	-0.36914					21	10	3	0	0	0	0.43775	1	9152	9152		20.454	1.0917	1	33456000			24588	9709	15606	15692	23646	23646					0.0017221149626038823
PKWRFLLLP	9	Unmodified	_PKWRFLLLP_					0	0	0			REV__ENSG00000159363|ENST00000326735|ATP13A2;REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MSMS	HCT116MG_D190212_S4	4	585.364013671875	2	585.363319	1168.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.857	1	52.517	52.017	53.017	-0.34023								0	0	0	0.76967	1	19717	19717		2.0598	0	1		+		24589	12803;17180	15607	15693	23647	23647					0.134477687786557
PKWVLFRKLWG	11	Unmodified	_PKWVLFRKLWG_					0	0	0			REV__ENST00000481599.1_1_6:39081481-39082817:-|nuORF	REV__ENST00000481599.1_1_6:39081481-39082817:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	715.3358154296875	2	715.426982	1428.83941	0.77464	0.0005542	0.74528	0.00053319	1.5199	0.0010874	715.4273412831665	56.34	0.72217	56.34	56.067	56.789	0					20	13	2	0	0	0	0.74191	1	21606	21606		1.3295	0.13619	1	11056000	+		24590	11449	15608	15694	23648	23648					0.14214489652817974
PKYDVNYKY	9	Unmodified	_PKYDVNYKY_					0	0	0			REV__ENSG00000184571|ENST00000616349|PIWIL3	REV__ENSG00000184571|ENST00000616349|PIWIL3	MSMS	HCT116MG_D190212_S2	2	397.20233154296875	3	397.201118	1188.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.107	1	29.822	29.322	30.322	-0.28453								0	0	0	0.53872	1	11055	11055		19.362	0	1		+		24591	13806	15609	15695	23649	23649					-0.005222917308628894
PLAACTHG	8	Unmodified	_PLAACTHG_					0	0	0			REV__IGSF9B|p.T1083Hfs*72|2|0.42|ENSG00000080854|chr11:133920478-133920479|-/G|frameshift_variant	REV__IGSF9B|p.T1083Hfs*72|2|0.42|ENSG00000080854|chr11:133920478-133920479|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	385.18572998046875	2	385.186706	768.358859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.818	1	55.531	55.031	56.031	-0.28773								0	0	0	0.8837	1	21177	21177		2.5775	0	1		+		24592	16899	15610	15696	23650	23650					-0.034586442770887516
PLAARAGRRK	10	Unmodified	_PLAARAGRRK_					0	0	0		ENST00000348165.9_1_7:156931958-156961760:+|nuORF	ENST00000348165.9_1_7:156931958-156961760:+|nuORF	ENST00000348165.9_1_7:156931958-156961760:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	548.3792114257812	2	548.346523	1094.67849	0.35608	0.00019526	-0.78468	-0.00043028	-0.4286	-0.00023502	548.3459766874868	50.089	0.56684	50.089	49.905	50.472	0					25	10	3	0	0	0	0.87945	1	19072	19072		3.5965	3.5965	1	127320000			24593	7268	15611	15697	23651	23651					0.1349416005944022
PLALLVKTA	9	Unmodified	_PLALLVKTA_					0	0	0			REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	MSMS	HCT116MG_D190212_S3	3	463.3095703125	2	463.307678	924.600803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.789	1	61.55	61.05	62.05	-0.2387								0	0	0	0.77012	1	23590	23590		0.45834	0	1		+		24594	16163	15612	15698	23652	23652					0.13548709350709487
PLAQPHPE	8	Unmodified	_PLAQPHPE_					0	0	0			REV__ENST00000544923.5_3_19:19310009-19312515:+|nuORF	REV__ENST00000544923.5_3_19:19310009-19312515:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	444.7320251464844	2	444.732335	887.450116	0.0055399	2.4638E-06	-0.77658	-0.00034537	-0.77104	-0.00034291	444.73186311806444	43.291	0.36447	43.291	43.056	43.42	0					13	6	3	0	0	0	0.82475	1	16335	16335		8.5933	0	1	33439000	+		24595	16390	15613	15699	23653	23653					0.0018894269189786428
PLARRDVLIT	10	Unmodified	_PLARRDVLIT_					0	0	0		BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN;BSN|p.P3390Hfs*97|1|0.22|ENSG00000164061|chr3:49662009-49662009|C/-|frameshift_variant	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	577.3541870117188	2	577.356222	1152.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.101	1	38.721	38.221	39.221	-0.38055								0	0	0	0.95351	1	14355	14355		3.9444	0.3479	1				24596	284	15614	15700	23654	23654					0.12765071559692842
PLARRLKAV	9	Unmodified	_PLARRLKAV_					0	0	0		ENST00000504517.5_1_5:148386573-148411207:-|nuORF;ENST00000510779.1_1_5:148384276-148408226:-|nuORF;nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2	ENST00000504517.5_1_5:148386573-148411207:-|nuORF	ENST00000504517.5_1_5:148386573-148411207:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.3433227539062	2	512.342918	1022.67128	0.32468	0.00016635	0.22944	0.00011755	0.55412	0.0002839	512.3429512753248	60.636	2.3191	60.487	60.013	62.332	-0.14852					94	44	3	0	0	0	0.74607	1	23385	23385		2.0598	0	1	79418000			24597	5062	15615	15701	23655	23655					0.16085427459040602
PLCFACVP	8	Unmodified	_PLCFACVP_					0	0	0			REV__ENST00000405486.5_2_22:41681791-41681956:-|nuORF	REV__ENST00000405486.5_2_22:41681791-41681956:-|nuORF	MSMS	HCT116MG_D190212_S3	3	425.2018127441406	2	425.20351	848.392467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.193	1	30.932	30.432	31.432	-0.26071								0	0	0	0.8837	1	11387	11387		6.3541	0.59368	1		+		24598	15406	15616	15702	23656	23656					-0.03779358829535795
PLCRKPLAAP	10	Unmodified	_PLCRKPLAAP_					0	0	0			REV__BSN|p.R896C|1|0.34|ENSG00000164061|chr3:49652242-49652242|C/T|missense_variant	REV__BSN|p.R896C|1|0.34|ENSG00000164061|chr3:49652242-49652242|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	533.3165283203125	2	533.315512	1064.61647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.358	1	34.971	34.471	35.471	-0.38606								0	0	0	0.95179	1	12947	12947		4.3292	0.38484	1		+		24599	10058	15617	15703	23657	23657					0.08674672596112032
PLCRRRPPG	9	Unmodified	_PLCRRRPPG_					0	0	0			REV__OSBPL7|p.P458L|1|0.12|ENSG00000006025|chr17:47813813-47813813|G/A|missense_variant	REV__OSBPL7|p.P458L|1|0.12|ENSG00000006025|chr17:47813813-47813813|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	351.202392578125	3	351.20291	1050.5869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.468	1	34.083	33.583	34.583	-0.38558								0	0	0	0.7696	1	12587	12587		1.1933	0	1		+		24600	10484	15618	15704	23658	23658					0.06363153370625696
PLCVQGHA	8	Unmodified	_PLCVQGHA_					0	0	0		ENST00000407780.7_1_21:45646895-45647000:-|nuORF	ENST00000407780.7_1_21:45646895-45647000:-|nuORF	ENST00000407780.7_1_21:45646895-45647000:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	413.2869873046875	2	412.707805	823.401058	0.067036	2.7666E-05	0.60477	0.00024959	0.6718	0.00027726	412.7079579240665	34.742	0.35526	34.356	34.187	34.542	-0.38598					10	6	2	0	0	0	0.32917	1	12764	12764		2.8892	2.8892	1	6637100			24601	7722	15619	15705	23659	23659					-0.017706688686985217
PLDCLYCWQRR	11	Unmodified	_PLDCLYCWQRR_					0	0	0			REV__IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	REV__IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	726.8477172851562	2	726.847381	1451.68021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.459	1	44.085	43.585	44.585	-0.37373								0	0	0	0.95581	1	16380	16380		3.2813	0	1		+		24602	16907	15620	15706	23660	23660					-0.027563350291302413
PLDEWLPPD	9	Unmodified	_PLDEWLPPD_					0	0	0		ENSG00000180347|ENST00000615280|ITPRID1;nc|ENSG00000180347|Q6ZRS4-4|ITPRID1;nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	ENSG00000180347|ENST00000615280|ITPRID1	ENSG00000180347|ENST00000615280|ITPRID1	MSMS	HCT116MG_D190212_S1	1	541.2626342773438	2	541.263665	1080.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.289	1	37.289	36.789	37.789	0								0	0	0	0.76781	1	13927	13927		8.5933	1.304	1				24603	5593	15621	15707	23661	23661					-0.02425956030560883
PLDHLKPLEY	10	Unmodified	_PLDHLKPLEY_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	HCT116MG_D190212_S1	1	409.17486572265625	3	408.892284	1223.65502	-0.2448	-0.00010009	0.25067	0.0001025	0.0058791	2.4039E-06	408.8923916100993	39.761	0.2597	39.761	39.605	39.865	0					7	4	2	0	0	0	0.31134	1	14932	14932		3.8763	1.97	1	7149500			24604	3371	15622	15708	23662	23662					0.052142567116106875
PLDHLKPLEY	10	Unmodified	_PLDHLKPLEY_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	HCT116MG_D190212_S2	2	612.83447265625	2	612.834788	1223.65502	0.22893	0.0001403	-0.78107	-0.00047866	-0.55213	-0.00033837	612.8345237132925	39.786	0.30949	39.713	39.636	39.945	-0.072838					7	5	2	0	0	0	0.034465	1	15015	15015		98.73	68.889	1	26207000			24605	3371	15622	15708	23663	23663					0.052142567116106875
PLDHLKPLEY	10	Unmodified	_PLDHLKPLEY_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	HCT116MG_D190212_S2	2	408.89202880859375	3	408.892284	1223.65502	-0.38874	-0.00015895	0.038028	1.5549E-05	-0.35071	-0.0001434	408.89216165292413	39.786	0.25768	39.713	39.584	39.842	-0.072838					6	4	2	0	0	0	0.066546	1	15019	15019		62.78	49.261	1	25782000			24606	3371	15622	15708	23664	23664					0.052142567116106875
PLDQAGPR	8	Unmodified	_PLDQAGPR_					0	0	0			REV__PTCRA|p.E236Kfs*59|1|0.3|ENSG00000171611|chr6:42925537-42925537|G/-|frameshift_variant	REV__PTCRA|p.E236Kfs*59|1|0.3|ENSG00000171611|chr6:42925537-42925537|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	427.22979736328125	2	427.229959	852.445365	0.11411	4.8751E-05	0.021696	9.2694E-06	0.13581	5.8021E-05	427.22988254035783	21.758	1.1012	21.775	21.166	22.267	0.017384					52	20	4	0	0	0	0.62424	1	7681	7681		30.225	1.738	1	42816000	+		24607	17452	15623	15709	23665	23665					0.013240585491416823
PLDQASVYFSP	11	Unmodified	_PLDQASVYFSP_					0	0	0			REV__nc|ENSG00000156709|O95831-4|AIFM1	REV__nc|ENSG00000156709|O95831-4|AIFM1	MSMS	HCT116MG_D190212_S4	4	612.2996826171875	2	612.300778	1222.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.398	1	20.197	19.697	20.697	-0.20133								0	0	0	0.94851	1	6980	6980		7.1017	0.89594	1		+		24608	12729	15624	15710	23666	23666					-0.015386129390662973
PLDRTVVRKFL	11	Unmodified	_PLDRTVVRKFL_					0	0	0			REV__ENST00000425967.7_1_8:38270429-38270498:-|nuORF	REV__ENST00000425967.7_1_8:38270429-38270498:-|nuORF	MSMS	HCT116MG_D190212_S4	4	448.60833740234375	3	448.610111	1342.8085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.398	1	52.056	51.556	52.556	-0.34114								0	0	0	0.95778	1	19532	19532		2.2527	1.5551	1		+		24609	15549	15625	15711	23667	23667					0.15081291547926412
PLDWQLRQPQP	11	Unmodified	_PLDWQLRQPQP_					0	0	0			REV__ENST00000295404.9_1_19:50200719-50213852:+|nuORF	REV__ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MSMS	HCT116MG_D190212_S1	1	689.365966796875	2	689.367318	1376.72008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.122	1	29.122	28.622	29.622	0								0	0	0	0.94538	1	10632	10632		8.7454	1.1365	1		+		24610	10289	15626	15712	23668	23668					0.0467925123743953
PLEAETPP	8	Unmodified	_PLEAETPP_					0	0	0		ENST00000470356.3_1_19:3572943-3574226:+|nuORF;ENST00000488973.6_1_19:3573129-3574226:+|nuORF;nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1	ENST00000470356.3_1_19:3572943-3574226:+|nuORF	ENST00000470356.3_1_19:3572943-3574226:+|nuORF	MSMS	HCT116MG_D190212_S3	3	427.26641845703125	2	427.218726	852.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.119	1	31.84	31.34	32.34	-0.27841								0	0	0	0.8837	1	11760	11760		14.582	1.0738	1				24611	8147	15627	15713	23669	23669					-0.00921585639150635
PLEEEEVD	8	Unmodified	_PLEEEEVD_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	959.42138671875	1	959.420398	958.413122	0.52765	0.00050624	0.27289	0.00026181	0.80054	0.00076805	959.42085460694	21.526	0.25968	21.141	21.063	21.323	-0.38503					8	4	2	0	0	0	0.8506	1	7614	7614		5.2307	0	1	10932000	+		24612	12172	15628	15714	23670	23670					-0.06774818435178531
PLEPHTSESP	10	Unmodified	_PLEPHTSESP_					0	0	0		nc|ENSG00000204930|A6H8Z2-3|FAM221B;ENSG00000204930|ENST00000423537|FAM221B	nc|ENSG00000204930|A6H8Z2-3|FAM221B	nc|ENSG00000204930|A6H8Z2-3|FAM221B	MULTI-MSMS	HCT116MG_D190212_S2	2	547.2623291015625	2	547.261653	1092.50875	0.61185	0.00033484	0.14459	7.9126E-05	0.75644	0.00041397	547.2618036922141	22.391	0.25894	22.005	21.895	22.154	-0.3852					7	4	2	0	0	0	0.34998	1	7940	7940		46.021	2.1627	1	19571000			24613	6356	15629	15715	23671	23671					-0.03380045524272646
PLEPHTSESP	10	Unmodified	_PLEPHTSESP_					0	0	0		nc|ENSG00000204930|A6H8Z2-3|FAM221B;ENSG00000204930|ENST00000423537|FAM221B	nc|ENSG00000204930|A6H8Z2-3|FAM221B	nc|ENSG00000204930|A6H8Z2-3|FAM221B	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	547.261653	1092.50875	0.42428	0.00023219	0.83588	0.00045745	1.2602	0.00068964	547.2619440375001	21.675	0.15877	21.694	21.588	21.747	0.018446	-0.15587	0.0005268	NaN	46.021	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3403700			24614	6356	15629	15715							-0.03380045524272646
PLERRCPDRWW	11	Unmodified	_PLERRCPDRWW_					0	0	0			REV__ENST00000423554.5_1_5:154202945-154230090:-|nuORF	REV__ENST00000423554.5_1_5:154202945-154230090:-|nuORF	MSMS	HCT116MG_D190212_S3	3	757.377197265625	2	757.377694	1512.74084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.917	1	38.615	38.115	39.115	-0.30137								0	0	0	0.95636	1	14432	14432		2.9952	0.26005	1		+		24615	13288	15630	15716	23672	23672					0.004975183454689613
PLEYPPPP	8	Unmodified	_PLEYPPPP_					0	0	0			REV__NFE2|p.E221Rfs*13|2|0.25|ENSG00000123405|chr12:54292835-54292835|C/-|frameshift_variant	REV__NFE2|p.E221Rfs*13|2|0.25|ENSG00000123405|chr12:54292835-54292835|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	455.23883056640625	2	455.239461	908.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.831	1	27.831	27.331	28.331	0								0	0	0	0.8837	1	10115	10115		15.768	4.6538	1		+		24616	11763	15631	15717	23673	23673					0.006475951201878161
PLFLEFPKD	9	Unmodified	_PLFLEFPKD_					0	0	0		GAA|p.E748Rfs*16|2|0.3|ENSG00000171298|chr17:80117015-80117015|G/-|frameshift_variant;ENSG00000171298|ENST00000302262|GAA	GAA|p.E748Rfs*16|2|0.3|ENSG00000171298|chr17:80117015-80117015|G/-|frameshift_variant	GAA|p.E748Rfs*16|2|0.3|ENSG00000171298|chr17:80117015-80117015|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	552.8365478515625	2	553.30005	1104.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.82	1	51.636	51.136	52.136	-0.18369								0	0	0	0.58443	1	19892	19892		24.674	0	1				24617	5187	15632	15718	23674	23674					0.037437977628542285
PLFLIILLSI	10	Unmodified	_PLFLIILLSI_					0	0	0			REV__nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	REV__nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	MSMS	HCT116MG_D190212_S3	3	381.2593688964844	3	381.258016	1140.75222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.988	1	58.724	58.224	59.224	-0.26405								0	0	0	0.96804	1	22452	22452		0.69767	0	1		+		24618	13377	15633	15719	23675	23675					0.18747270658582238
PLFPDQPP	8	Unmodified	_PLFPDQPP_					0	0	0			REV__ENSG00000128602|ENST00000249373|SMO	REV__ENSG00000128602|ENST00000249373|SMO	MULTI-SECPEP	HCT116MG_D190212_S2	2	455.7352294921875	2	455.737086	909.459619	0.1508	6.8726E-05	-4.4201	-0.0020144	-4.2693	-0.0019457	455.7351663200657	24.802	0.20765	24.426	24.296	24.504	-0.37521					5	3	2	0	0	0	0.2686	1	8932	8932		30.198	15.36	1	7597600	+		24619	11879	15634	15720	23676	23676					0.0012671097742895654
PLFPDQPP	8	Unmodified	_PLFPDQPP_					0	0	0			REV__ENSG00000128602|ENST00000249373|SMO	REV__ENSG00000128602|ENST00000249373|SMO	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	455.737086	909.459619	0.19758	9.0044E-05	-4.4959	-0.0020489	-4.2983	-0.0019589	455.7350585516018	24.399	0.20791	24.315	24.185	24.393	-0.083694	-0.05572	-4.8398E-07	NaN	30.198	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3675800	+		24620	11879	15634	15720							0.0012671097742895654
PLFPRPRHGDP	11	Unmodified	_PLFPRPRHGDP_					0	0	0		ENST00000447677.5_1_10:76970876-76972015:+|nuORF;ENST00000344036.8_1_10:76970456-76972015:+|nuORF;ENST00000332211.10_2_10:76970615-76972015:+|nuORF	ENST00000447677.5_1_10:76970876-76972015:+|nuORF	ENST00000447677.5_1_10:76970876-76972015:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	645.5700073242188	2	644.849096	1287.68364	0.63249	0.00040786	-2.1368	-0.0013779	-1.5043	-0.00097006	644.8482928068905	19.725	0.20903	19.725	19.6	19.809	0					6	3	2	0	0	0	0.34807	1	6857	6857		12.241	2.1667	1	3168700			24621	7167	15635	15721	23677	23677					0.051304191314102354
PLGDPRPA	8	Unmodified	_PLGDPRPA_					0	0	0			REV__ENST00000465272.1_1_7:150773814-150774090:-|nuORF	REV__ENST00000465272.1_1_7:150773814-150774090:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	411.7270812988281	2	411.727052	821.439552	0.027312	1.1245E-05	-0.025416	-1.0464E-05	0.001896	7.8063E-07	411.7269700118465	18.712	1.0933	18.781	17.886	18.979	0.069157					31	20	2	0	0	0	0.41924	1	6425	6425		48.346	3.9388	1	6637600	+		24622	15821	15636	15722	23678	23678					0.021689600374770635
PLGEDGLP	8	Unmodified	_PLGEDGLP_					0	0	0		nc|ENSG00000197467|Q5TAT6-10|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1	nc|ENSG00000197467|Q5TAT6-10|COL13A1	nc|ENSG00000197467|Q5TAT6-10|COL13A1	MSMS	HCT116MG_D190212_S4	4	399.2068786621094	2	399.205618	796.396684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.317	1	36.933	36.433	37.433	-0.3839								0	0	0	0.86899	1	13690	13690		17.087	0	1				24623	6149	15637	15723	23679	23679					-0.009658548106017406
PLGFVGPRGQ	10	Unmodified	_PLGFVGPRGQ_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MSMS	HCT116MG_D190212_S4	4	514.2869873046875	2	514.287808	1026.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.625	1	36.24	35.74	36.74	-0.38486								0	0	0	0.92272	1	13410	13410		10.824	2.9138	1		+		24624	12072	15638	15724	23680	23680					0.04884582399995452
PLGLHHTHII	10	Unmodified	_PLGLHHTHII_					0	0	0			REV__DRC1|p.W618Gfs*19|1|0.36|ENSG00000157856|chr2:26453477-26453477|C/-|frameshift_variant	REV__DRC1|p.W618Gfs*19|1|0.36|ENSG00000157856|chr2:26453477-26453477|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	569.3290405273438	2	569.330008	1136.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.096	1	37.713	37.213	38.213	-0.38283								0	0	0	0.91906	1	13949	13949		11.64	0	1		+		24625	10410	15639	15725	23681	23681					0.08260533216753174
PLGLTFVSLF	10	Unmodified	_PLGLTFVSLF_					0	0	0			REV__ENSG00000060642|ENST00000674202|PIGV	REV__ENSG00000060642|ENST00000674202|PIGV	MSMS	HCT116MG_D190212_S4	4	365.2320861816406	3	365.214587	1092.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.505	1	61.245	60.745	61.745	-0.2602								0	0	0	0.96263	1	23205	23205		1.9064	0	1		+		24626	10669	15640	15726	23682	23682					0.0793267465955978
PLGPEGPRG	9	Unmodified	_PLGPEGPRG_					0	0	0			REV__nc|ENSG00000139219|P02458-1|COL2A1;REV__COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	REV__nc|ENSG00000139219|P02458-1|COL2A1	MSMS	HCT116MG_D190212_S4	4	440.23809814453125	2	440.237784	878.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.042	1	18.855	18.355	19.355	-0.18674								0	0	0	0.1044	1	6432	6432		54.774	0	1		+		24627	12253;10242	15641	15727	23683	23683					0.01692345066192047
PLGPERPG	8	Unmodified	_PLGPERPG_					0	0	0			REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	411.7273864746094	2	411.727052	821.439552	-0.12622	-5.1966E-05	0.068092	2.8035E-05	-0.058124	-2.3931E-05	411.7270787404211	19.388	0.6244	19.018	18.627	19.252	-0.3695					17	11	2	0	0	0	0.21487	1	6755	6755		70.716	6.4792	1	4890800	+		24628	15051	15642	15728	23684	23684					0.021689600374770635
PLGPERPG	8	Unmodified	_PLGPERPG_					0	0	0			REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	411.72674560546875	2	411.727052	821.439552	0.027312	1.1245E-05	-0.025416	-1.0464E-05	0.001896	7.8063E-07	411.7269700118465	18.712	1.0933	18.781	17.886	18.979	0.069157					31	20	2	0	0	0	0.3916	1	6180	6180		50.855	6.448	1	6637600	+		24629	15051	15642	15728	23685	23685					0.021689600374770635
PLGPERPG	8	Unmodified	_PLGPERPG_					0	0	0			REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	412.2295227050781	2	411.727052	821.439552	0.0021036	8.6612E-07	0.27066	0.00011144	0.27277	0.00011231	411.72703453334736	22.604	1.1336	22.585	21.814	22.948	-0.018869					32	21	2	0	0	0	0.28659	1	7784	7784		60.39	6.814	1	5160200	+		24630	15051	15642	15728	23686	23686					0.021689600374770635
PLGPERPG	8	Unmodified	_PLGPERPG_					0	0	0			REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	412.2295227050781	2	411.727052	821.439552	0.0021036	8.6612E-07	0.27066	0.00011144	0.27277	0.00011231	411.72703453334736	22.604	1.1336	22.585	21.814	22.948	-0.018869					32	21	2	0	0	0	0.19016	1	7784	7784		60.39	15.983	1	5160200	+		24631	15051	15642	15728	23687	23687					0.021689600374770635
PLGPERPG	8	Unmodified	_PLGPERPG_					0	0	0			REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	411.7272033691406	2	411.727052	821.439552	0.068217	2.8087E-05	-0.0011517	-4.742E-07	0.067065	2.7613E-05	411.7269481236199	18.919	0.98529	18.733	18.041	19.026	-0.18591					29	18	2	0	0	0	0.3916	1	6283	6283		50.855	3.9342	1	3277900	+		24632	15051	15642	15728	23688	23688					0.021689600374770635
PLGPERPG	8	Unmodified	_PLGPERPG_					0	0	0			REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	412.23004150390625	2	411.727052	821.439552	0.029139	1.1997E-05	0.30639	0.00012615	0.33553	0.00013815	411.727031043476	22.761	1.0959	22.523	21.978	23.074	-0.23758					31	20	2	0	0	0	0.3916	1	7822	7822		50.855	6.448	1	5159900	+		24633	15051	15642	15728	23689	23689					0.021689600374770635
PLGPERPG	8	Unmodified	_PLGPERPG_					0	0	0			REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	411.727052	821.439552	-0.12622	-5.1966E-05	0.068092	2.8035E-05	-0.058124	-2.3931E-05	411.7270787404211	19.388	0.6244	19.018	18.627	19.252	-0.3695	0.17407	6.1556E-05	NaN	70.716	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4890800	+		24634	15051	15642	15728							0.021689600374770635
PLGPERPG	8	Unmodified	_PLGPERPG_					0	0	0			REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	411.727052	821.439552	0.027312	1.1245E-05	-0.025416	-1.0464E-05	0.001896	7.8063E-07	411.7269700118465	18.712	1.0933	18.781	17.886	18.979	0.069157	-0.063021	-1.5444E-05	NaN	70.716	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6637600	+		24635	15051	15642	15728							0.021689600374770635
PLGPERPG	8	Unmodified	_PLGPERPG_					0	0	0			REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	REV__ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	411.727052	821.439552	0.068217	2.8087E-05	-0.0011517	-4.742E-07	0.067065	2.7613E-05	411.7269481236199	18.919	0.98529	18.733	18.041	19.026	-0.18591	-0.11105	4.5368E-06	NaN	70.716	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3277900	+		24636	15051	15642	15728							0.021689600374770635
PLGPPFNP	8	Unmodified	_PLGPPFNP_					0	0	0			REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF	REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	838.5603637695312	1	838.445766	837.438489	0.93496	0.00078391	-0.24437	-0.00020489	0.69059	0.00057902	838.4451741591141	58.469	0.20229	58.183	58.092	58.294	-0.28681					5	3	2	0	0	0	0.28568	1	22000	22000		24.21	3.3387	1	4321000	+		24637	14748	15643	15729	23690	23690					0.013267456685639445
PLGPPGDRGP	10	Unmodified	_PLGPPGDRGP_					0	0	0		ENSG00000092758|ENST00000649368|COL9A3	ENSG00000092758|ENST00000649368|COL9A3	ENSG00000092758|ENST00000649368|COL9A3	MSMS	HCT116MG_D190212_S3	3	481.7554016113281	2	481.756341	961.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.546	1	34.249	33.749	34.749	-0.29707								0	0	0	0.88269	1	12720	12720		18.135	0	1				24638	1585	15644	15730	23691	23691					0.015840166119460264
PLGPREPG	8	Unmodified	_PLGPREPG_					0	0	0			REV__FOXL1|p.L20V|1|0.37|ENSG00000176678|chr16:86578781-86578781|C/G|missense_variant	REV__FOXL1|p.L20V|1|0.37|ENSG00000176678|chr16:86578781-86578781|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	411.7272644042969	2	411.727052	821.439552	0.0021036	8.6612E-07	0.27066	0.00011144	0.27277	0.00011231	411.72703453334736	22.604	1.1336	22.585	21.814	22.948	-0.018869					32	21	2	0	0	0	0.71077	1	7840	7840		21.747	1.293	1	5160200	+		24639	13550	15645	15731	23692	23692					0.021689600374770635
PLGRDPPQ	8	Unmodified	_PLGRDPPQ_					0	0	0		ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;CDK18|p.T391Qfs*8|1|0.36|ENSG00000117266|chr1:205529327-205529327|C/-|frameshift_variant	ENST00000504648.5_1_1:205492597-205500503:+|nuORF	ENST00000504648.5_1_1:205492597-205500503:+|nuORF	MSMS	HCT116MG_D190212_S3	3	440.23828125	2	440.237784	878.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.827	1	18.896	18.396	19.396	0.069159								0	0	0	0.27832	1	6419	6419		57.471	0	1				24640	2566	15646	15732	23693	23693					0.016923450661806783
PLGREGPP	8	Unmodified	_PLGREGPP_					0	0	0			REV__nc|ENSG00000111799|Q99715-2|COL12A1;REV__ENSG00000134871|ENST00000360467|COL4A2;REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MSMS	HCT116MG_D190212_S1	1	411.72662353515625	2	411.727052	821.439552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.101	1	19.101	18.601	19.601	0								0	0	0	0.72655	1	6605	6605		28.487	0	1		+		24641	14187;12072;10222	15647	15733	23694	23694					0.021689600374770635
PLGREGPP	8	Unmodified	_PLGREGPP_					0	0	0			REV__nc|ENSG00000111799|Q99715-2|COL12A1;REV__ENSG00000134871|ENST00000360467|COL4A2;REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	HCT116MG_D190212_S3	3	411.5169677734375	2	411.727052	821.439552	0.0021036	8.6612E-07	0.27066	0.00011144	0.27277	0.00011231	411.72703453334736	22.604	1.1336	22.585	21.814	22.948	-0.018869					32	21	2	0	0	0	0.71077	1	8047	8047		21.747	0	1	5160200	+		24642	14187;12072;10222	15647	15733	23695	23695					0.021689600374770635
PLHFAYHVY	9	Unmodified	_PLHFAYHVY_					0	0	0			REV__DOCK6|p.R841H|1|0.33|ENSG00000130158|chr19:11235630-11235630|C/T|missense_variant	REV__DOCK6|p.R841H|1|0.33|ENSG00000130158|chr19:11235630-11235630|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	573.7908325195312	2	573.790184	1145.56581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.294	1	16.945	16.445	17.445	-0.34933								0	0	0	0.76611	1	5877	5877		14.582	1.5392	1		+		24643	10403	15648	15734	23696	23696					-0.0011453345725840336
PLHGEDIP	8	Unmodified	_PLHGEDIP_					0	0	0			REV__ENST00000556245.1_1_14:62011269-62016546:+|nuORF	REV__ENST00000556245.1_1_14:62011269-62016546:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	439.2247619628906	2	439.224342	876.434132	-0.052338	-2.2988E-05	1.1288	0.00049581	1.0765	0.00047282	439.22478362990284	44.542	0.31391	44.542	44.41	44.724	0					9	5	2	0	0	0	0.8029	1	16881	16881		11.114	0	1	12001000	+		24644	10566	15649	15735	23697	23697					-0.009027635450024718
PLHIFIVVPF	10	Unmodified	_PLHIFIVVPF_					0	0	0			REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	MSMS	HCT116MG_D190212_S4	4	591.3602294921875	2	591.357702	1180.70085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.681	1	40.303	39.803	40.803	-0.37828								0	0	0	0.93576	1	14934	14934		7.9102	3.5809	1		+		24645	16487	15650	15736	23698	23698					0.11772946684504859
PLIEKAKSKK	10	Unmodified	_PLIEKAKSKK_					0	0	0		tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	tr|U7SK95|U7SK95_FUSNURNAhelicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02151PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	381.2484436035156	3	381.248291	1140.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.719	1	61.719	61.219	62.219	0								0	0	0	0.96769	1	23819	23819		0.77653	0	1				24646	18322	15651	15737	23699	23699					0.15831126362263603
PLIHTIIGIAR	11	Unmodified	_PLIHTIIGIAR_					0	0	0			REV__ENSG00000062725|ENST00000083182|APPBP2	REV__ENSG00000062725|ENST00000083182|APPBP2	MSMS	HCT116MG_D190212_S2	2	401.9239807128906	3	401.923919	1202.74993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.795	1	40.726	40.226	41.226	-0.069626								0	0	0	0.9387	1	15395	15395		6.6235	0.43161	1		+		24647	10679	15652	15738	23700	23700					0.1566623497344608
PLIIQILVLK	10	Unmodified	_PLIIQILVLK_					0	0	0			REV__BMPR2|p.I540Lfs*24|2|0.36|ENSG00000204217|chr2:202555279-202555279|A/-|frameshift_variant	REV__BMPR2|p.I540Lfs*24|2|0.36|ENSG00000204217|chr2:202555279-202555279|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	383.9368591308594	3	383.937165	1148.78967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.238	1	11.238	10.738	11.738	0								0	0	0	0.97116	1	3519	3519		0	0	1		+		24648	10046	15653	15739	23701	23701					0.22122361924152756
PLIISSMI	8	Unmodified	_PLIISSMI_					0	0	0		ENSG00000106688|ENST00000262352|SLC1A1;SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant;SLC1A1|p.K232Rfs*12|1|0.25|ENSG00000106688|chr9:4572313-4572313|A/-|frameshift_variant	ENSG00000106688|ENST00000262352|SLC1A1	ENSG00000106688|ENST00000262352|SLC1A1	MSMS	HCT116MG_D190212_S1	1	437.2612609863281	2	437.259339	872.504126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.802	1	21.802	21.302	22.302	0								0	0	0	0.8837	1	7688	7688		10.183	4.423	1				24649	2092	15654	15740	23702	23702					0.06277398799261391
PLIKLHIIWKK	11	Unmodified	_PLIKLHIIWKK_					0	0	0		SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.29|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;SDK2|p.P1324Lfs*69|1|0.1|ENSG00000069188|chr17:73391466-73391466|G/-|frameshift_variant;SDK2|p.S1083Vfs*66|2|0.32|ENSG00000069188|chr17:73398143-73398143|G/-|frameshift_variant;SDK2|p.R1007Afs*3|1|0.43|ENSG00000069188|chr17:73399242-73399242|G/-|frameshift_variant	SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant	SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	694.9622802734375	2	694.960658	1387.90676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.079	1	28.763	28.263	29.263	-0.31613								0	0	0	0.95954	1	10636	10636		1.3295	0.9789	1				24650	1214	15655	15741	23703	23703					0.22832519863754897
PLILYITMV	9	Unmodified	_PLILYITMV_					0	0	0			REV__APIP|p.T203Hfs*22|1|0.4|ENSG00000149089|chr11:34883359-34883359|T/-|frameshift_variant	REV__APIP|p.T203Hfs*22|1|0.4|ENSG00000149089|chr11:34883359-34883359|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	531.8173217773438	2	531.817021	1061.61949	0.37166	0.00019765	0.12858	6.838E-05	0.50024	0.00026603	531.81697706238	45.393	1.4565	45.393	44.829	46.285	0					48	27	3	0	0	0	0.71898	1	17359	17359		3.9444	3.9444	1	46817000	+		24651	9963	15656	15742	23704	23704					0.09114502930242452
PLILYLGMV	9	Unmodified	_PLILYLGMV_					0	0	0		nc|ENSG00000123643|Q7Z2H8-3|SLC36A1;ENSG00000123643|ENST00000243389|SLC36A1	nc|ENSG00000123643|Q7Z2H8-3|SLC36A1	nc|ENSG00000123643|Q7Z2H8-3|SLC36A1	MULTI-MSMS	HCT116MG_D190212_S1	1	509.8040466308594	2	509.803914	1017.59328	0.3732	0.00019026	0.68657	0.00035001	1.0598	0.00054027	509.80416573143066	47.323	0.37876	47.323	47.062	47.441	0					13	7	2	0	0	0	0.7005	1	17980	17980		5.2307	0.47466	1	60370000			24652	2814	15657	15743	23705	23705					0.08518233758775295
PLILYLGMV	9	Unmodified	_PLILYLGMV_					0	0	0		nc|ENSG00000123643|Q7Z2H8-3|SLC36A1;ENSG00000123643|ENST00000243389|SLC36A1	nc|ENSG00000123643|Q7Z2H8-3|SLC36A1	nc|ENSG00000123643|Q7Z2H8-3|SLC36A1	MULTI-MSMS	HCT116MG_D190212_S4	4	509.8042907714844	2	509.803914	1017.59328	0.23938	0.00012204	-0.07362	-3.7532E-05	0.16576	8.4504E-05	509.8038159770174	45.501	1.1113	45.128	44.586	45.697	-0.37266					39	23	2	0	0	0	0.74258	1	16913	16913		2.3027	0	1	9348000			24653	2814	15657	15743	23706	23706					0.08518233758775295
PLILYLGMV	9	Unmodified	_PLILYLGMV_					0	0	0		nc|ENSG00000123643|Q7Z2H8-3|SLC36A1;ENSG00000123643|ENST00000243389|SLC36A1	nc|ENSG00000123643|Q7Z2H8-3|SLC36A1	nc|ENSG00000123643|Q7Z2H8-3|SLC36A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	509.803914	1017.59328	0.3732	0.00019026	0.68657	0.00035001	1.0598	0.00054027	509.80416573143066	47.323	0.37876	47.323	47.062	47.441	0	0	0	NaN	5.2307	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60370000			24654	2814	15657	15743							0.08518233758775295
PLIPKRVGLI	10	Unmodified	_PLIPKRVGLI_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MSMS	HCT116MG_D190212_S4	4	369.2532653808594	3	369.253376	1104.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.265	1	37.882	37.382	38.382	-0.38283								0	0	0	0.96911	1	14018	14018		0.15932	0	1				24655	1598	15658	15744	23707	23707					0.19012037950142258
PLIQRFPAIP	10	Unmodified	_PLIQRFPAIP_					0	0	0		MAGEE1|p.F714Lfs*74|1|0.78|ENSG00000198934|chrX:76430067-76430067|T/-|frameshift_variant	MAGEE1|p.F714Lfs*74|1|0.78|ENSG00000198934|chrX:76430067-76430067|T/-|frameshift_variant	MAGEE1|p.F714Lfs*74|1|0.78|ENSG00000198934|chrX:76430067-76430067|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	576.3492431640625	2	576.350409	1150.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.496	1	38.496	37.996	38.996	0								0	0	0	0.91507	1	14414	14414		12.532	0	1				24656	9311	15659	15745	23708	23708					0.11694874536351563
PLIVFSAV	8	Unmodified	_PLIVFSAV_					0	0	0		ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	MSMS	HCT116MG_D190212_S4	4	423.26007080078125	2	423.260197	844.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.819	1	31.444	30.944	31.944	-0.37529								0	0	0	0.8837	1	11564	11564		10.183	3.8293	1				24657	8788	15660	15746	23709	23709					0.07736775879516244
PLKGGAPA	8	Unmodified	_PLKGGAPA_					0	0	0		ENST00000495607.5_1_22:50750992-50752415:-|nuORF	ENST00000495607.5_1_22:50750992-50752415:-|nuORF	ENST00000495607.5_1_22:50750992-50752415:-|nuORF	MSMS	HCT116MG_D190212_S4	4	355.7121276855469	2	355.713414	709.412274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.165	1	37.782	37.282	38.282	-0.38283								0	0	0	0.8837	1	13977	13977		0.79363	0	1				24658	8383	15661	15747	23710	23710					0.04594476497084088
PLKIIHLDVIQ	11	Unmodified	_PLKIIHLDVIQ_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MSMS	HCT116MG_D190212_S1	1	644.6809692382812	2	644.903005	1287.79146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.296	1	20.296	19.796	20.796	0								0	0	0	0.95023	1	7086	7086		6.2058	0	1		+		24659	13053	15662	15748	23711	23711					0.1590737094211363
PLKKKKKRK	9	Unmodified	_PLKKKKKRK_					0	0	0		ENST00000515726.1_1_4:124318844-124319012:+|nuORF	ENST00000515726.1_1_4:124318844-124319012:+|nuORF	ENST00000515726.1_1_4:124318844-124319012:+|nuORF	MSMS	HCT116MG_D190212_S3	3	385.2809143066406	3	385.280037	1152.81828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.502	1	26.352	25.852	26.852	-0.14924								0	0	0	0.76991	1	9510	9510		1.1933	0.92432	1				24660	8537	15663	15749	23712	23712					0.24798524343964345
PLKKKKKRK	9	Unmodified	_PLKKKKKRK_					0	0	0		ENST00000515726.1_1_4:124318844-124319012:+|nuORF	ENST00000515726.1_1_4:124318844-124319012:+|nuORF	ENST00000515726.1_1_4:124318844-124319012:+|nuORF	MSMS	HCT116MG_D190212_S4	4	385.28045654296875	3	385.280037	1152.81828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.691	1	26.39	25.89	26.89	-0.30087								0	0	0	0.76991	1	9520	9520		1.1933	0.92432	1				24661	8537	15663	15749	23713	23713					0.24798524343964345
PLKKKKKRK	9	Unmodified	_PLKKKKKRK_					0	0	0		ENST00000515726.1_1_4:124318844-124319012:+|nuORF	ENST00000515726.1_1_4:124318844-124319012:+|nuORF	ENST00000515726.1_1_4:124318844-124319012:+|nuORF	MSMS	HCT116MG_D190212_S4	4	577.4190673828125	2	577.416417	1152.81828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.884	1	53.555	53.055	54.055	-0.32923								0	0	0	0.76954	1	20131	20131		4.3292	0	1				24662	8537	15663	15749	23714	23714					0.24798524343964345
PLKKVIARKKV	11	Unmodified	_PLKKVIARKKV_					0	0	0			REV__nc|ENSG00000017260|P98194-2|ATP2C1	REV__nc|ENSG00000017260|P98194-2|ATP2C1	MSMS	HCT116MG_D190212_S1	1	427.20135498046875	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.266	1	58.266	57.766	58.766	0								0	0	0	0.96208	1	22440	22440		0	0	1		+		24663	10544	15664	15750	23715	23715					0.2580734920393297
PLKKVIARKKV	11	Unmodified	_PLKKVIARKKV_					0	0	0			REV__nc|ENSG00000017260|P98194-2|ATP2C1	REV__nc|ENSG00000017260|P98194-2|ATP2C1	MSMS	HCT116MG_D190212_S2	2	427.5873718261719	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.879	1	36.764	36.264	37.264	-0.11478								0	0	0	0.9619	1	13805	13805		0.094841	0	1		+		24664	10544	15664	15750	23716	23716					0.2580734920393297
PLKKVIARKKV	11	Unmodified	_PLKKVIARKKV_					0	0	0			REV__nc|ENSG00000017260|P98194-2|ATP2C1	REV__nc|ENSG00000017260|P98194-2|ATP2C1	MSMS	HCT116MG_D190212_S2	2	427.7877197265625	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.362	1	58.192	57.692	58.692	-0.1703								0	0	0	0.96208	1	22554	22554		0	0	1		+		24665	10544	15664	15750	23717	23717					0.2580734920393297
PLKLILLPVLL	11	Unmodified	_PLKLILLPVLL_					0	0	0		nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	MSMS	HCT116MG_D190212_S3	3	411.2964172363281	3	411.296582	1230.86792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.263	1	33.969	33.469	34.469	-0.29419								0	0	0	0.96111	1	12605	12605		0.50596	0.50596	1				24666	4454	15665	15751	23718	23718					0.2617179450940057
PLKLILLPVLL	11	Unmodified	_PLKLILLPVLL_					0	0	0		nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	MSMS	HCT116MG_D190212_S4	4	411.2964782714844	3	411.296582	1230.86792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.249	1	33.864	33.364	34.364	-0.38558								0	0	0	0.96111	1	12498	12498		0.50596	0.50596	1				24667	4454	15665	15751	23719	23719					0.2617179450940057
PLKLILLPVLL	11	Unmodified	_PLKLILLPVLL_					0	0	0		nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	nc|ENSG00000160593|Q86YT9-3|JAML	MSMS	HCT116MG_D190212_S4	4	411.33294677734375	3	411.296582	1230.86792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.215	1	57.926	57.426	58.426	-0.28879								0	0	0	0.9619	1	21873	21873		0.094841	0.094841	1				24668	4454	15665	15751	23720	23720					0.2617179450940057
PLKLKAPGTI	10	Unmodified	_PLKLKAPGTI_					0	0	0		ENST00000509566.1_1_4:844107-866085:-|nuORF	ENST00000509566.1_1_4:844107-866085:-|nuORF	ENST00000509566.1_1_4:844107-866085:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.2687377929688	2	519.33951	1036.66447	0.29715	0.00015432	0.79407	0.00041239	1.0912	0.00056671	519.3399888187425	54.722	0.30779	54.533	54.405	54.712	-0.1894					6	5	2	0	0	0	0.3029	1	21144	21144		6.7232	3.1267	1	19586000			24669	8488	15666	15752	23721	23721					0.14760069787803332
PLKPGVIQKR	10	Unmodified	_PLKPGVIQKR_					0	0	0		ENST00000438116.2_1_22:40983448-40983622:-|nuORF	ENST00000438116.2_1_22:40983448-40983622:-|nuORF	ENST00000438116.2_1_22:40983448-40983622:-|nuORF	MSMS	HCT116MG_D190212_S3	3	379.2490539550781	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.428	1	62.196	61.696	62.696	-0.23129								0	0	0	0.96836	1	23847	23847		0.62683	0.39098	1				24670	7893	15667	15753	23722	23722					0.1617396580197692
PLKRAKIVLVA	11	Unmodified	_PLKRAKIVLVA_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S1	1	403.2799987792969	3	403.279814	1206.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.467	1	53.467	52.967	53.967	0								0	0	0	0.9619	1	20477	20477		0.094841	0.094841	1		+		24671	12706;18029	15668	15754	23723	23723					0.22247684904255038
PLKRLLREWYN	11	Unmodified	_PLKRLLREWYN_					0	0	0			REV__ENSG00000106591|ENST00000223324|MRPL32	REV__ENSG00000106591|ENST00000223324|MRPL32	MSMS	HCT116MG_D190212_S1	1	744.3165893554688	2	744.42771	1486.84087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.651	1	20.651	20.151	21.151	0								0	0	0	0.95954	1	7229	7229		1.3295	0	1		+		24672	11304	15669	15755	23724	23724					0.11692078950954965
PLKVMPAPPP	10	Unmodified	_PLKVMPAPPP_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MSMS	HCT116MG_D190212_S4	4	524.0587158203125	2	523.806988	1045.59942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.688	1	34.302	33.802	34.802	-0.38558								0	0	0	0.91507	1	12676	12676		12.532	2.4576	1				24673	1126	15670	15756	23725	23725					0.07844751990296572
PLLAKPKLDP	10	Unmodified	_PLLAKPKLDP_					0	0	0		nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000129116|Q8WX93-3|PALLD	nc|ENSG00000129116|Q8WX93-3|PALLD	MSMS	HCT116MG_D190212_S2	2	546.3465576171875	2	546.344792	1090.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.05	1	32.838	32.338	33.338	-0.21135								0	0	0	0.94107	1	12249	12249		6.7232	3.7279	1				24674	9457	15671	15757	23726	23726					0.13332052442206077
PLLIAFFFNKV	11	Unmodified	_PLLIAFFFNKV_					0	0	0		ENST00000261700.7_1_14:52471272-52471401:+|nuORF	ENST00000261700.7_1_14:52471272-52471401:+|nuORF	ENST00000261700.7_1_14:52471272-52471401:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	436.92901611328125	3	436.92867	1307.76418	0.13389	5.8501E-05	0.60042	0.00026234	0.73432	0.00032084	436.92912449639044	54.968	0.25482	54.968	54.841	55.095	0					5	4	2	0	0	0	0.74191	1	21130	21130		0.50596	0	1	20821000			24675	6856	15672	15758	23727	23727					0.12260887401748732
PLLKKQTLVK	10	Unmodified	_PLLKKQTLVK_					0	0	0		ENST00000375958.3_1_13:103498616-103506268:+|nuORF;nc|ENSG00000134899|P28715-3|ERCC5;ENSG00000134899|ENST00000652225|ERCC5	ENST00000375958.3_1_13:103498616-103506268:+|nuORF	ENST00000375958.3_1_13:103498616-103506268:+|nuORF	MSMS	HCT116MG_D190212_S4	4	584.3931884765625	2	584.394816	1166.77508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.322	1	58.034	57.534	58.534	-0.28879								0	0	0	0.95507	1	21917	21917		3.5965	0.60125	1				24676	3313	15673	15759	23728	23728					0.19836289776003468
PLLKKYRHHKK	11	Unmodified	_PLLKKYRHHKK_					0	0	0		ENST00000383686.2_1_3:110611078-110612293:-|nuORF	ENST00000383686.2_1_3:110611078-110612293:-|nuORF	ENST00000383686.2_1_3:110611078-110612293:-|nuORF	MSMS	HCT116MG_D190212_S3	3	724.4517822265625	2	724.454062	1446.89357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.304	1	58.034	57.534	58.534	-0.26932								0	0	0	0.95954	1	22176	22176		1.3295	0	1				24677	7586	15674	15760	23729	23729					0.18800081804374713
PLLKRLPLRRK	11	Unmodified	_PLLKRLPLRRK_					0	0	0		sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1;sp|F5HB40|UL84_HCMVMProteinUL84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL84PE=3SV=1	sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	MSMS	HCT116MG_D190212_S4	4	695.4799194335938	2	695.48008	1388.94561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.409	1	27.094	26.594	27.594	-0.31473								0	0	0	0.96208	1	9810	9810		0	0	1				24678	18191	15675	15761	23730	23730					0.26669245218135984
PLLLAFVT	8	Unmodified	_PLLLAFVT_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MSMS	HCT116MG_D190212_S4	4	437.5914001464844	2	437.275847	872.537141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.431	1	54.107	53.607	54.607	-0.32349								0	0	0	0.8837	1	20352	20352		2.3027	0	1				24679	1705	15676	15762	23731	23731					0.09577348913614969
PLLLLLHLSQQ	11	Unmodified	_PLLLLLHLSQQ_					0	0	0			REV__ENST00000396908.8_2_19:36255765-36256006:+|nuORF	REV__ENST00000396908.8_2_19:36255765-36256006:+|nuORF	MSMS	HCT116MG_D190212_S1	1	637.89306640625	2	637.89518	1273.77581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.964	1	20.964	20.464	21.464	0								0	0	0	0.95581	1	7355	7355		3.2813	0	1		+		24680	15360	15677	15763	23732	23732					0.14987084425069952
PLLLLLLLRP	10	Unmodified	_PLLLLLLLRP_					0	0	0		THSD7A|p.S727Kfs*30|1|0.05|ENSG00000005108|chr7:11474407-11474408|-/TTTGTTT|frameshift_variant;THSD7A|p.N1009Mfs*47|1|0.08|ENSG00000005108|chr7:11446099-11446099|T/-|frameshift_variant;THSD7A|p.C1369Lfs*5|1|0.13|ENSG00000005108|chr7:11406431-11406432|-/A|frameshift_variant;THSD7A|p.R1591Kfs*62|1|0.26|ENSG00000005108|chr7:11379101-11379102|-/C|frameshift_variant;ENSG00000005108|ENST00000423059|THSD7A;THSD7A|p.P225Rfs*11|1|0.16|ENSG00000005108|chr7:11636478-11636478|G/-|frameshift_variant	THSD7A|p.S727Kfs*30|1|0.05|ENSG00000005108|chr7:11474407-11474408|-/TTTGTTT|frameshift_variant	THSD7A|p.S727Kfs*30|1|0.05|ENSG00000005108|chr7:11474407-11474408|-/TTTGTTT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	580.9142456054688	2	580.910102	1159.80565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.509	1	27.509	27.009	28.009	0								0	0	0	0.96911	1	9985	9985		0.45834	0	1				24681	810	15678	15764	23733	23733					0.2321406816106446
PLLLLLLLRVP	11	Unmodified	_PLLLLLLLRVP_					0	0	0		SRPX|p.P226Qfs*32|2|0.25|ENSG00000101955|chrX:38161031-38161031|G/-|frameshift_variant;nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENSG00000101955|ENST00000378533|SRPX	SRPX|p.P226Qfs*32|2|0.25|ENSG00000101955|chrX:38161031-38161031|G/-|frameshift_variant	SRPX|p.P226Qfs*32|2|0.25|ENSG00000101955|chrX:38161031-38161031|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	630.4437866210938	2	630.444309	1258.87407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.315	1	25.315	24.815	25.815	0								0	0	0	0.96208	1	9101	9101		0	0	1				24682	1816	15679	15765	23734	23734					0.2549831274091048
PLLLPKGVVL	10	Unmodified	_PLLLPKGVVL_					0	0	0		nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MSMS	HCT116MG_D190212_S3	3	350.2437438964844	3	350.242477	1047.7056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.861	1	41.559	41.059	42.059	-0.30257								0	0	0	0.97045	1	15576	15576		0.15932	0	1				24683	2520;4595	15680	15766	23735	23735					0.18365830827292484
PLLLPKGVVL	10	Unmodified	_PLLLPKGVVL_					0	0	0		nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MSMS	HCT116MG_D190212_S4	4	350.24359130859375	3	350.242477	1047.7056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.85	1	41.474	40.974	41.974	-0.37637								0	0	0	0.97045	1	15359	15359		0.15932	0	1				24684	2520;4595	15680	15766	23736	23736					0.18365830827292484
PLLLVLHILSL	11	Unmodified	_PLLLVLHILSL_					0	0	0			REV__ENSG00000243896|ENST00000641841|OR2A7	REV__ENSG00000243896|ENST00000641841|OR2A7	MSMS	HCT116MG_D190212_S4	4	616.3743286132812	2	615.912842	1229.81113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.361	1	51.011	50.511	51.511	-0.35028								0	0	0	0.95925	1	19113	19113		1.4819	0	1		+		24685	13666	15681	15767	23737	23737					0.2054174695290385
PLLPAAAPRAA	11	Unmodified	_PLLPAAAPRAA_					0	0	0			REV__ENST00000560032.1_1_14:24641799-24642251:+|nuORF	REV__ENST00000560032.1_1_14:24641799-24642251:+|nuORF	MSMS	HCT116MG_D190212_S4	4	524.3186645507812	2	524.319109	1046.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.267	1	32.885	32.385	33.385	-0.38223								0	0	0	0.95023	1	12112	12112		6.2058	0.97511	1		+		24686	16482	15682	15768	23738	23738					0.10221728468150104
PLLPLLPPLPY	11	Unmodified	_PLLPLLPPLPY_					0	0	0		ENST00000603027.5_2_10:75568216-75568354:-|nuORF	ENST00000603027.5_2_10:75568216-75568354:-|nuORF	ENST00000603027.5_2_10:75568216-75568354:-|nuORF	MSMS	HCT116MG_D190212_S3	3	617.2010498046875	2	616.886293	1231.75803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.027	1	48.711	48.211	49.211	-0.31596								0	0	0	0.95521	1	18453	18453		3.5965	0	1				24687	9101	15683	15769	23739	23739					0.15142369170234815
PLLPMPLP	8	Unmodified	_PLLPMPLP_					0	0	0		ATG9B|p.P98Qfs*8|2|0.55|ENSG00000181652|chr7:151024131-151024131|G/-|frameshift_variant;ATG9B|p.P254Sfs*5|1|0.12|ENSG00000181652|chr7:151023103-151023106|ACGG/-|frameshift_variant;nc|ENSG00000181652|Q674R7-3|ATG9B;ATG9B|p.P721Qfs*62|2|0.28|ENSG00000181652|chr7:151017163-151017163|G/-|frameshift_variant;ENSG00000181652|ENST00000639579|ATG9B	ATG9B|p.P98Qfs*8|2|0.55|ENSG00000181652|chr7:151024131-151024131|G/-|frameshift_variant	ATG9B|p.P98Qfs*8|2|0.55|ENSG00000181652|chr7:151024131-151024131|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	439.2646484375	2	439.264425	876.514297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.334	1	39.956	39.456	40.456	-0.37828								0	0	0	0.77998	1	14794	14794		24.21	1.7573	1				24688	216	15684	15770	23740	23740					0.07110006524476375
PLLQPKMRAI	10	Unmodified	_PLLQPKMRAI_					0	0	0		nc|ENSG00000105173|P24864-2|CCNE1;nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1	nc|ENSG00000105173|P24864-2|CCNE1	nc|ENSG00000105173|P24864-2|CCNE1	MULTI-MSMS	HCT116MG_D190212_S2	2	583.8583374023438	2	583.857544	1165.70053	0.62917	0.00036734	1.562	0.00091197	2.1911	0.0012793	583.8586768923341	52.501	1.0323	52.314	51.883	52.915	-0.18725					42	19	3	0	0	0	0.87801	1	20116	20116		3.9444	3.9444	1	33205000			24689	1984	15685	15771	23741	23741					0.12431203693017778
PLLQRLLNP	9	Unmodified	_PLLQRLLNP_					0	0	0			REV__ENST00000476046.1_1_10:28884921-28897371:+|nuORF	REV__ENST00000476046.1_1_10:28884921-28897371:+|nuORF	MSMS	HCT116MG_D190212_S3	3	532.331787109375	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.584	1	41.281	40.781	41.781	-0.30257								0	0	0	0.7676	1	15468	15468		9.3474	1.4373	1		+		24690	11032	15686	15772	23742	23742					0.12614301502276248
PLLRDLRPLP	10	Unmodified	_PLLRDLRPLP_					0	0	0			REV__ENST00000456950.6_1_17:40821512-40828020:-|nuORF	REV__ENST00000456950.6_1_17:40821512-40828020:-|nuORF	MSMS	HCT116MG_D190212_S3	3	397.2515869140625	3	397.252036	1188.73428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.929	1	36.627	36.127	37.127	-0.30113								0	0	0	0.95179	1	13662	13662		2.086	0	1		+		24691	10735	15687	15773	23743	23743					0.14745948456402402
PLLRWRCPGLW	11	Unmodified	_PLLRWRCPGLW_					0	0	0		ENST00000477531.3_1_3:170150402-170150480:+|nuORF	ENST00000477531.3_1_3:170150402-170150480:+|nuORF	ENST00000477531.3_1_3:170150402-170150480:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	699.0606689453125	2	698.887167	1395.75978	0.58378	0.000408	-0.46023	-0.00032165	0.12356	8.6352E-05	698.8867518310262	51.009	0.41351	51.009	50.833	51.246	0					13	7	3	0	0	0	0.36553	1	19448	19448		0.35063	0.043601	1	7433000			24692	8213	15688	15774	23744	23744					0.07773099707196707
PLLTPTPSEP	10	Unmodified	_PLLTPTPSEP_					0	0	0			REV__DCLK2|p.H747Tfs*153|1|0.21|ENSG00000170390|chr4:150256180-150256180|C/-|frameshift_variant	REV__DCLK2|p.H747Tfs*153|1|0.21|ENSG00000170390|chr4:150256180-150256180|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	526.2860107421875	2	526.28714	1050.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.814	1	31.439	30.939	31.939	-0.37529								0	0	0	0.91906	1	11562	11562		11.64	0	1		+		24693	10337	15689	15775	23745	23745					0.03646903520552769
PLLVLVHPDY	10	Unmodified	_PLLVLVHPDY_					0	0	0		ENSG00000171954|ENST00000269703|CYP4F22	ENSG00000171954|ENST00000269703|CYP4F22	ENSG00000171954|ENST00000269703|CYP4F22	MSMS	HCT116MG_D190212_S1	1	583.3348999023438	2	583.334424	1164.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.001	1	55.001	54.501	55.501	0								0	0	0	0.89194	1	21108	21108		16.942	4.4107	1				24694	5226	15690	15776	23746	23746					0.07855462062548213
PLLWLIRLC	9	Unmodified	_PLLWLIRLC_					0	0	0			REV__ENST00000311956.8_1_11:46699617-46699725:-|nuORF	REV__ENST00000311956.8_1_11:46699617-46699725:-|nuORF	MSMS	HCT116MG_D190212_S1	1	376.2328796386719	3	376.231695	1125.67326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.294	1	57.294	56.794	57.794	0								0	0	0	0.77008	1	22044	22044		0.26902	0	1		+		24695	14839	15691	15777	23747	23747					0.11544720152642185
PLLWREPFPKL	11	Unmodified	_PLLWREPFPKL_					0	0	0			REV__ENST00000525276.1_1_11:70261940-70262195:+|nuORF	REV__ENST00000525276.1_1_11:70261940-70262195:+|nuORF	MSMS	HCT116MG_D190212_S3	3	698.411376953125	2	698.410998	1394.80744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.236	1	32.946	32.446	33.446	-0.29013								0	0	0	0.95521	1	12192	12192		3.5965	0	1		+		24696	16268	15692	15778	23748	23748					0.12583077179010616
PLLWTSKDV	9	Unmodified	_PLLWTSKDV_					0	0	0			REV__ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant	REV__ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	529.7797241210938	2	529.797675	1057.5808	0.16329	8.6512E-05	-4.4279	-0.0023459	-4.2646	-0.0022594	529.7949740824785	48.583	0.20621	48.583	48.46	48.666	0					8	3	3	0	0	0	0.21838	1	18474	18474		20.454	0	1	17670000	+		24697	10434	15693	15779	23749	23749					0.05430913620079991
PLMEDFFEEG	10	Unmodified	_PLMEDFFEEG_					0	0	0		ZNF473|p.F384Lfs*35|1|0.08|ENSG00000142528|chr19:50045591-50045591|T/-|frameshift_variant;ZNF473|p.F545Lfs*2|1|0.3|ENSG00000142528|chr19:50046073-50046073|T/-|frameshift_variant;ZNF473|p.H533Rfs*30|1|0.46|ENSG00000142528|chr19:50046040-50046041|CA/-|frameshift_variant;ZNF473|p.D680Efs*13|1|0.22|ENSG00000142528|chr19:50046482-50046483|AC/-|frameshift_variant;ENSG00000142528|ENST00000270617|ZNF473	ZNF473|p.F384Lfs*35|1|0.08|ENSG00000142528|chr19:50045591-50045591|T/-|frameshift_variant	ZNF473|p.F384Lfs*35|1|0.08|ENSG00000142528|chr19:50045591-50045591|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	607.3363037109375	2	607.257722	1212.50089	0.50002	0.00030364	-0.12142	-7.3733E-05	0.3786	0.00022991	607.2575821510925	15.553	1.3007	15.638	14.988	16.289	0.085423					57	24	3	0	0	0	0.72678	1	5105	5105		18.146	3.3081	1	11875000			24698	3759	15694	15780	23750	23750					-0.09685940836084228
PLMKTTFV	8	Unmodified	_PLMKTTFV_					0	0	0		ENST00000316902.11_1_14:23652558-23652753:-|nuORF;ENST00000525062.1_3_14:23652243-23652753:-|nuORF	ENST00000316902.11_1_14:23652558-23652753:-|nuORF	ENST00000316902.11_1_14:23652558-23652753:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	468.76483154296875	2	468.764789	935.515025	0.33104	0.00015518	-0.15711	-7.3646E-05	0.17393	8.1534E-05	468.76473620698397	56.041	0.20889	55.753	55.623	55.832	-0.28773					5	3	2	0	0	0	0.86388	1	21291	21291		2.8892	0	1	3221500			24699	7086	15695	15781	23751	23751					0.04468801173527481
PLMLALHD	8	Unmodified	_PLMLALHD_					0	0	0			REV__ENSG00000166743|ENST00000520010|ACSM1	REV__ENSG00000166743|ENST00000520010|ACSM1	MSMS	HCT116MG_D190212_S4	4	455.2484130859375	2	455.246763	908.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.602	1	33.218	32.718	33.718	-0.38426								0	0	0	0.8837	1	12238	12238		10.183	3.8293	1		+		24700	13120	15696	15782	23752	23752					0.021073439966812657
PLMSNNNALS	10	Unmodified	_PLMSNNNALS_					0	0	0			REV__tr|U7T211|U7T211_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00427PE=4SV=1	REV__tr|U7T211|U7T211_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00427PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	354.17572021484375	3	354.174574	1059.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.587	1	58.417	57.917	58.917	-0.1703								0	0	0	0.96377	1	22647	22647		0.69767	0	1		+		24701	17910	15697	15783	23753	23753					-0.025476816765149124
PLNKTDAGP	9	Unmodified	_PLNKTDAGP_					0	0	0			REV__ENST00000468859.1_1_3:125581808-125604769:-|nuORF	REV__ENST00000468859.1_1_3:125581808-125604769:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	457.7870788574219	2	456.742899	911.471246	0.36173	0.00016522	0.017906	8.1783E-06	0.37964	0.0001734	456.74277640113314	25.026	1.4039	24.746	24.383	25.787	-0.27958					57	26	3	0	0	0	0.39063	1	8728	8728		23.148	1.4018	1	12562000	+		24702	15850	15698	15784	23754	23754					0.01196908000770236
PLNMLLPLL	9	Oxidation (M)	_PLNM(Oxidation (M))LLPLL_		PLNM(1)LLPLL		PLNM(54)LLPLL	0	0	1		nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1;nc|ENSG00000168216|Q9NUN5-4|LMBRD1;nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-3|LMBRD1	nc|ENSG00000168216|Q9NUN5-3|LMBRD1	MULTI-MSMS	HCT116MG_D190212_S2	2	520.315185546875	2	520.314646	1038.61474	0.42168	0.00021941	0.0081177	4.2238E-06	0.4298	0.00022363	520.3147247506837	56.187	0.25722	56.004	55.847	56.104	-0.18261					6	4	2	0	0	0	0.12335	2	21696	21647;21696		53.576	13.626	1	13180000			24703	4990	15699	15785	23755;23756	23756		108			0.09697618787504325
PLNRTSRSL	9	Unmodified	_PLNRTSRSL_					0	0	0			REV__KCNQ4|p.R95Afs*44|1|0.26|ENSG00000117013|chr1:40784373-40784373|C/-|frameshift_variant	REV__KCNQ4|p.R95Afs*44|1|0.26|ENSG00000117013|chr1:40784373-40784373|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	523.256591796875	2	522.301447	1042.58834	0.23867	0.00012466	0.12414	6.4839E-05	0.36281	0.0001895	522.301612393569	30.853	0.15558	30.586	30.456	30.612	-0.26704					4	2	2	0	0	0	0.57626	1	11337	11337		12.532	2.4576	1	11944000	+		24704	16919	15700	15786	23757	23757					0.06875065940380409
PLNSNGAEMWR	11	Unmodified	_PLNSNGAEMWR_					0	0	0		nc|ENSG00000184313|Q68CQ1-1|MROH7;MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;nc|ENSG00000184313|Q68CQ1-2|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MSMS	HCT116MG_D190212_S4	4	637.8034057617188	2	637.800954	1273.58736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.374	1	36.99	36.49	37.49	-0.3839								0	0	0	0.89672	1	13713	13713		20.415	0	1				24705	9576	15701	15787	23758	23758					-0.038495164908681545
PLPCDCIPPP	10	Unmodified	_PLPCDCIPPP_					0	0	0		ENST00000325327.3_1_19:2429436-2429694:-|nuORF	ENST00000325327.3_1_19:2429436-2429694:-|nuORF	ENST00000325327.3_1_19:2429436-2429694:-|nuORF	MSMS	HCT116MG_D190212_S2	2	526.251708984375	2	526.251188	1050.48782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.829	1	31.58	31.08	32.08	-0.24883								0	0	0	0.88269	1	11756	11756		18.135	4.6271	1				24706	7134	15702	15788	23759	23759					-0.035400504291601465
PLPCDCIPPP	10	Unmodified	_PLPCDCIPPP_					0	0	0		ENST00000325327.3_1_19:2429436-2429694:-|nuORF	ENST00000325327.3_1_19:2429436-2429694:-|nuORF	ENST00000325327.3_1_19:2429436-2429694:-|nuORF	MSMS	HCT116MG_D190212_S3	3	526.25244140625	2	526.251188	1050.48782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.975	1	31.698	31.198	32.198	-0.27661								0	0	0	0.91507	1	11702	11702		12.532	1.7076	1				24707	7134	15702	15788	23760	23760					-0.035400504291601465
PLPCDCIPPP	10	Unmodified	_PLPCDCIPPP_					0	0	0		ENST00000325327.3_1_19:2429436-2429694:-|nuORF	ENST00000325327.3_1_19:2429436-2429694:-|nuORF	ENST00000325327.3_1_19:2429436-2429694:-|nuORF	MSMS	HCT116MG_D190212_S4	4	526.4566650390625	2	526.251188	1050.48782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.241	1	31.866	31.366	32.366	-0.37529								0	0	0	0.89194	1	11735	11735		16.942	6.1184	1				24708	7134	15702	15788	23761	23761					-0.035400504291601465
PLPCPPWGTGW	11	Unmodified	_PLPCPPWGTGW_					0	0	0			REV__ENST00000477161.1_1_10:15256501-15262993:-|nuORF	REV__ENST00000477161.1_1_10:15256501-15262993:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	606.2890625	2	605.789327	1209.5641	0.59718	0.00036176	-1.958	-0.0011861	-1.3608	-0.00082435	605.7890151772706	24.841	0.88535	24.757	24.237	25.122	-0.083694					27	16	2	0	0	0	0.7259	1	8840	8840		12.241	1.4167	1	5044700	+		24709	15922	15703	15789	23762	23762					-0.03229910537515934
PLPCSHPA	8	Unmodified	_PLPCSHPA_					0	0	0		ENST00000534797.5_1_11:494532-494676:-|nuORF	ENST00000534797.5_1_11:494532-494676:-|nuORF	ENST00000534797.5_1_11:494532-494676:-|nuORF	MSMS	HCT116MG_D190212_S4	4	411.2031555175781	2	411.202356	820.390159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.428	1	34.043	33.543	34.543	-0.38558								0	0	0	0.8837	1	12571	12571		15.768	5.5848	1				24710	8657	15704	15790	23763	23763					-0.027220712429880223
PLPEGRGP	8	Unmodified	_PLPEGRGP_					0	0	0			REV__ENST00000549412.5_2_12:49760692-49761130:+|nuORF	REV__ENST00000549412.5_2_12:49760692-49761130:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	412.23004150390625	2	411.727052	821.439552	0.029139	1.1997E-05	0.30639	0.00012615	0.33553	0.00013815	411.727031043476	22.761	1.0959	22.523	21.978	23.074	-0.23758					31	20	2	0	0	0	0.20735	1	7822	7822		44.407	0	1	5159900	+		24711	16418	15705	15791	23764	23764					0.021689600374770635
PLPFCLSEPL	10	Unmodified	_PLPFCLSEPL_					0	0	0			REV__ENST00000393313.5_1_7:127032353-127032743:-|nuORF	REV__ENST00000393313.5_1_7:127032353-127032743:-|nuORF	MSMS	HCT116MG_D190212_S1	1	558.2923583984375	2	558.293911	1114.57327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.69	1	57.69	57.19	58.19	0								0	0	0	0.93854	1	22205	22205		7.2892	1.0834	1		+		24712	15325	15706	15792	23765	23765					0.020564380281484773
PLPFKKRLRY	10	Unmodified	_PLPFKKRLRY_					0	0	0			REV__SIX5|p.G712Vfs*14|2|0.39|ENSG00000177045|chr19:45765586-45765586|C/-|frameshift_variant	REV__SIX5|p.G712Vfs*14|2|0.39|ENSG00000177045|chr19:45765586-45765586|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	440.7025146484375	3	439.943313	1316.80811	0.084734	3.7278E-05	-0.17337	-7.6272E-05	-0.088633	-3.8994E-05	439.94314297756785	51.025	0.25961	50.846	50.758	51.018	-0.17869					6	4	2	0	0	0	0.31174	1	19591	19591		2.086	0.97625	1	11170000	+		24713	13560	15707	15793	23766	23766					0.16237916618729287
PLPFLVQRVLL	11	Unmodified	_PLPFLVQRVLL_					0	0	0			REV__ENST00000588938.1_1_19:39086232-39087718:-|nuORF	REV__ENST00000588938.1_1_19:39086232-39087718:-|nuORF	MSMS	HCT116MG_D190212_S1	1	432.2802429199219	3	432.279703	1293.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.781	1	36.781	36.281	37.281	0								0	0	0	0.96111	1	13721	13721		0.50596	0	1		+		24714	11220	15708	15794	23767	23767					0.18212265184433818
PLPGQPEPIT	10	Unmodified	_PLPGQPEPIT_					0	0	0			REV__nc|ENSG00000182871|P39060-1|COL18A1	REV__nc|ENSG00000182871|P39060-1|COL18A1	MULTI-MSMS	HCT116MG_D190212_S2	2	524.787109375	2	524.787307	1047.56006	0.64153	0.00033667	-0.10978	-5.761E-05	0.53175	0.00027906	524.787165531448	31.596	0.36316	31.348	31.095	31.458	-0.24883					12	6	2	0	0	0	0.16489	1	11644	11644		62.573	2.4988	1	19716000	+		24715	17239	15709	15795	23768	23768					0.038183232404207956
PLPGQPEPIT	10	Unmodified	_PLPGQPEPIT_					0	0	0			REV__nc|ENSG00000182871|P39060-1|COL18A1	REV__nc|ENSG00000182871|P39060-1|COL18A1	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7870483398438	2	524.787307	1047.56006	0.32313	0.00016957	0.016319	8.5638E-06	0.33945	0.00017814	524.7872020568367	31.541	0.46955	31.271	31.064	31.534	-0.27028					14	8	3	0	0	0	0.35357	1	11548	11548		45.7	1.9272	1	5412800	+		24716	17239	15709	15795	23769	23769					0.038183232404207956
PLPHFVRP	8	Unmodified	_PLPHFVRP_					0	0	0			REV__ENST00000575022.1_1_17:6699788-6699974:+|nuORF	REV__ENST00000575022.1_1_17:6699788-6699974:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	482.28472900390625	2	481.782162	961.549771	0.25583	0.00012325	1.5785	0.0007605	1.8343	0.00088375	481.7822029846469	45.704	0.73137	45.704	45.295	46.027	0					29	13	3	0	0	0	0.84415	1	17376	17376		6.3541	0	1	8988300	+		24717	16597	15710	15796	23770	23770					0.06745805096522872
PLPKMWRH	8	Unmodified	_PLPKMWRH_					0	0	0			REV__ENST00000563680.1_1_16:30004823-30006585:-|nuORF	REV__ENST00000563680.1_1_16:30004823-30006585:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	355.06988525390625	3	355.532256	1063.57494	-0.20005	-7.1123E-05	0.46387	0.00016492	0.26382	9.3796E-05	355.8663098496791	25.508	0.20933	25.139	24.978	25.187	-0.36914					5	3	2	0	0	0	0.33249	1	9182	9182		1.8442	0.6509	1	10406000	+		24718	16515	15711	15797	23771	23771					0.04569536627445814
PLPLTCPIL	9	Unmodified	_PLPLTCPIL_					0	0	0		ENST00000421997.5_1_1:95145158-95285609:-|nuORF	ENST00000421997.5_1_1:95145158-95285609:-|nuORF	ENST00000421997.5_1_1:95145158-95285609:-|nuORF	MSMS	HCT116MG_D190212_S4	4	483.7886962890625	2	483.788264	965.561975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.941	1	44.568	44.068	45.068	-0.37326								0	0	0	0.69272	1	16562	16562		19.439	1.304	1				24719	7792	15712	15798	23772	23772					0.07781660724685935
PLPPDMAH	8	Unmodified	_PLPPDMAH_					0	0	0		PTPN13|p.P1734H|1|0.3|ENSG00000163629|chr4:86772810-86772810|C/A|missense_variant	PTPN13|p.P1734H|1|0.3|ENSG00000163629|chr4:86772810-86772810|C/A|missense_variant	PTPN13|p.P1734H|1|0.3|ENSG00000163629|chr4:86772810-86772810|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	439.2173767089844	2	439.215463	876.416374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.396	1	41.019	40.519	41.519	-0.37732								0	0	0	0.8837	1	15211	15211		6.3541	0	1				24720	9791	15713	15799	23773	23773					-0.026778020715028106
PLPPGVVAK	9	Unmodified	_PLPPGVVAK_					0	0	0			REV__ENST00000460485.1_1_2:128047028-128047064:-|nuORF	REV__ENST00000460485.1_1_2:128047028-128047064:-|nuORF	MSMS	HCT116MG_D190212_S4	4	439.2806091308594	2	439.278921	876.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.316	1	41.94	41.44	42.44	-0.37565								0	0	0	0.76781	1	15548	15548		8.5933	2.2392	1		+		24721	15772	15714	15800	23774	23774					0.10007867145134242
PLPPLKWP	8	Unmodified	_PLPPLKWP_					0	0	0		ENST00000587856.1_1_17:43311355-43318139:+|nuORF	ENST00000587856.1_1_17:43311355-43318139:+|nuORF	ENST00000587856.1_1_17:43311355-43318139:+|nuORF	MSMS	HCT116MG_D190212_S3	3	474.29095458984375	2	474.289288	946.564024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.558	1	46.245	45.745	46.745	-0.31237								0	0	0	0.8837	1	17460	17460		5.2307	0	1				24722	9012	15715	15801	23775	23775					0.08860457524792764
PLPRPQWLGPV	11	Unmodified	_PLPRPQWLGPV_					0	0	0		ENST00000531505.1_1_11:44102670-44102868:+|nuORF	ENST00000531505.1_1_11:44102670-44102868:+|nuORF	ENST00000531505.1_1_11:44102670-44102868:+|nuORF	MSMS	HCT116MG_D190212_S2	2	630.3678588867188	2	630.36659	1258.71863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.33	1	29.021	28.521	29.521	-0.3091								0	0	0	0.95521	1	10739	10739		3.5965	0	1				24723	8621	15716	15802	23776	23776					0.09961661939360056
PLPRTKAKIF	10	Unmodified	_PLPRTKAKIF_					0	0	0			REV__FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	REV__FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	391.28424072265625	3	390.916764	1169.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.223	1	10.223	9.7233	10.723	0								0	0	0	0.97045	1	3126	3126		0.15932	0.064481	1		+		24724	10809	15717	15803	23777	23777					0.15038849944721733
PLPWLWFPAG	10	Unmodified	_PLPWLWFPAG_					0	0	0			REV__ENSG00000104998|ENST00000263379|IL27RA	REV__ENSG00000104998|ENST00000263379|IL27RA	MSMS	HCT116MG_D190212_S1	1	592.317626953125	2	592.318577	1182.6226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.691	1	36.691	36.191	37.191	0								0	0	0	0.95179	1	13685	13685		4.3292	0.38484	1		+		24725	11231	15718	15804	23778	23778					0.03859514099281114
PLQIIKIIR	9	Unmodified	_PLQIIKIIR_					0	0	0		DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant;DNAH6|p.S3773Lfs*5|1|0.09|ENSG00000115423|chr2:84796377-84796377|T/-|frameshift_variant;ENSG00000115423|ENST00000389394|DNAH6;DNAH6|p.R2682Kfs*27|1|0.42|ENSG00000115423|chr2:84701316-84701317|-/A|frameshift_variant;DNAH6|p.N304Ifs*16|1|0.2|ENSG00000115423|chr2:84544475-84544475|A/-|frameshift_variant;nc|ENSG00000115423|Q9C0G6-4|DNAH6	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	365.253173828125	3	365.253376	1092.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.9	1	47.531	47.031	48.031	-0.36907								0	0	0	0.77018	1	17722	17722		0.26902	0	1				24726	706	15719	15805	23779	23779					0.19564037950112834
PLQLSRRKERM	11	Unmodified	_PLQLSRRKERM_					0	0	0			REV__PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	REV__PLEKHA6|p.D852Tfs*20|1|0.44|ENSG00000143850|chr1:204230443-204230443|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	707.409423828125	2	707.408995	1412.80344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.178	1	37.876	37.376	38.376	-0.30137								0	0	0	0.94538	1	14133	14133		8.7454	5.4641	1		+		24727	12405	15720	15806	23780	23780					0.11354664413647697
PLQQERQTLVW	11	Unmodified	_PLQQERQTLVW_					0	0	0			REV__nc|ENSG00000143442|Q7Z3K3-7|POGZ	REV__nc|ENSG00000143442|Q7Z3K3-7|POGZ	MULTI-MSMS	HCT116MG_D190212_S1	1	699.056640625	2	699.380426	1396.7463	0.81334	0.00056883	-0.27332	-0.00019116	0.54001	0.00037768	699.3803055279421	45.581	0.26133	45.581	45.399	45.66	0					7	4	2	0	0	0	0.74191	1	17201	17201		1.4819	0	1	18541000	+		24728	12393	15721	15807	23781	23781					0.0637952040892742
PLQQQAQAF	9	Unmodified	_PLQQQAQAF_					0	0	0			REV__ENSG00000125726|ENST00000245903|CD70	REV__ENSG00000125726|ENST00000245903|CD70	MSMS	HCT116MG_D190212_S3	3	515.771484375	2	515.769448	1029.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.438	1	57.162	56.662	57.662	-0.27561								0	0	0	0.76641	1	21828	21828		13.508	0.97634	1		+		24729	11814	15722	15808	23782	23782					0.010762857834151873
PLQRDWQYQ	9	Unmodified	_PLQRDWQYQ_					0	0	0			REV__ENST00000485116.5_1_11:124623544-124626668:-|nuORF	REV__ENST00000485116.5_1_11:124623544-124626668:-|nuORF	MSMS	HCT116MG_D190212_S2	2	617.3015747070312	2	617.304187	1232.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.311	1	59.149	58.649	59.649	-0.16203								0	0	0	0.7701	1	22935	22935		0.52476	0.066424	1		+		24730	12568	15723	15809	23783	23783					-0.013172552678270222
PLRGPGRPPT	10	Unmodified	_PLRGPGRPPT_					0	0	0		ENST00000514984.1_1_4:1243983-1244804:+|nuORF;ENST00000578730.1_1_4:1243983-1244322:+|nuORF	ENST00000514984.1_1_4:1243983-1244804:+|nuORF	ENST00000514984.1_1_4:1243983-1244804:+|nuORF	MSMS	HCT116MG_D190212_S4	4	524.30810546875	2	524.306532	1046.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.154	1	26.842	26.342	27.342	-0.3114								0	0	0	0.92607	1	9707	9707		10.074	0.6908	1				24731	8526	15724	15810	23784	23784					0.07707673665595394
PLRILRVMV	9	Unmodified	_PLRILRVMV_					0	0	0			REV__ENST00000427765.1_3_9:96318853-96320130:+|nuORF	REV__ENST00000427765.1_3_9:96318853-96320130:+|nuORF	MSMS	HCT116MG_D190212_S1	1	366.23858642578125	3	366.238961	1095.69505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.638	1	30.638	30.138	31.138	0								0	0	0	0.76991	1	11244	11244		1.1933	0.23107	1		+		24732	15563	15725	15811	23785	23785					0.15103524901201126
PLRKKQRGLL	10	Unmodified	_PLRKKQRGLL_					0	0	0		CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	604.8988037109375	2	604.901131	1207.78771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.738	1	32.738	32.238	33.238	0								0	0	0	0.96377	1	12091	12091		1.6526	0.17072	1				24733	409	15726	15812	23786	23786					0.192127459589301
PLRLKELKILN	11	Unmodified	_PLRLKELKILN_					0	0	0		LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF;LRRK2|p.R1639Kfs*13|1|0.36|ENSG00000188906|chr12:40320067-40320068|-/A|frameshift_variant;LRRK2|p.R1639Gfs*15|1|0.59|ENSG00000188906|chr12:40320068-40320068|A/-|frameshift_variant;LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	446.2596740722656	3	446.294012	1335.86021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.367	1	36.983	36.483	37.483	-0.3839								0	0	0	0.9619	1	13710	13710		0.094841	0	1				24734	6008	15727	15813	23787	23787					0.20571035241846403
PLRLKELKILN	11	Unmodified	_PLRLKELKILN_					0	0	0		LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF;LRRK2|p.R1639Kfs*13|1|0.36|ENSG00000188906|chr12:40320067-40320068|-/A|frameshift_variant;LRRK2|p.R1639Gfs*15|1|0.59|ENSG00000188906|chr12:40320068-40320068|A/-|frameshift_variant;LRRK2|p.N2261Kfs*9|1|0.28|ENSG00000188906|chr12:40356119-40356120|-/A|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	LRRK2|p.K1328Rfs*8|1|0.21|ENSG00000188906|chr12:40308485-40308485|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	446.2959289550781	3	446.294012	1335.86021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.398	1	37.014	36.514	37.514	-0.3839								0	0	0	0.9619	1	13722	13722		0.094841	0	1				24735	6008	15727	15813	23788	23788					0.20571035241846403
PLRPPAPRLP	10	Unmodified	_PLRPPAPRLP_					0	0	0			REV__ENST00000604516.1_1_6:79944248-79944593:+|nuORF	REV__ENST00000604516.1_1_6:79944248-79944593:+|nuORF	MSMS	HCT116MG_D190212_S1	1	557.751708984375	2	557.3482	1112.68185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.36	1	24.36	23.86	24.86	0								0	0	0	0.94339	1	8717	8717		6.2058	0.97511	1		+		24736	16763	15728	15814	23789	23789					0.13001410113474776
PLRRANRRPRR	11	Unmodified	_PLRRANRRPRR_					0	0	0			REV__ENSG00000063978|ENST00000314289|RNF4	REV__ENSG00000063978|ENST00000314289|RNF4	MULTI-MSMS	HCT116MG_D190212_S2	2	724.4522094726562	2	724.450708	1446.88686	1.0355	0.00075018	0.06433	4.6604E-05	1.0998	0.00079678	724.45062317778	55.487	0.46399	55.301	55.123	55.587	-0.18565					22	8	3	0	0	0	0.74191	1	21402	21402		1.1933	0	1	40009000	+		24737	10683	15729	15815	23790	23790					0.18129581696371133
PLRRIAFTS	9	Unmodified	_PLRRIAFTS_					0	0	0			REV__ENST00000466942.2_1_10:77161749-77161830:+|nuORF	REV__ENST00000466942.2_1_10:77161749-77161830:+|nuORF	MSMS	HCT116MG_D190212_S3	3	354.2121887207031	3	354.213581	1059.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.18	1	45.868	45.368	46.368	-0.31237								0	0	0	0.76995	1	17310	17310		1.0715	0	1		+		24738	15831	15730	15816	23791	23791					0.091488443254093
PLRRQELLD	9	Unmodified	_PLRRQELLD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MSMS	HCT116MG_D190212_S3	3	570.5123291015625	2	570.330205	1138.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.389	1	56.105	55.605	56.605	-0.28367								0	0	0	0.76781	1	21406	21406		8.5933	0	1				24739	5560	15731	15817	23792	23792					0.08207908145936926
PLRRRHVL	8	Unmodified	_PLRRRHVL_					0	0	0			REV__ENST00000557989.1_1_15:30115015-30115315:+|nuORF	REV__ENST00000557989.1_1_15:30115015-30115315:+|nuORF	MSMS	HCT116MG_D190212_S1	1	523.7941284179688	2	523.838334	1045.66212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.2	1	57.2	56.7	57.7	0								0	0	0	0.8837	1	22006	22006		5.7604	0.52976	1		+		24740	16470	15732	15818	23793	23793					0.14111078893370177
PLRRRRRRKWR	11	Unmodified	_PLRRRRRRKWR_					0	0	0			REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MSMS	HCT116MG_D190212_S1	1	818.5213012695312	2	818.521999	1635.02945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.756	1	52.756	52.256	53.256	0								0	0	0	0.95925	1	20187	20187		1.4819	1.4819	1		+		24741	14907	15733	15819	23794	23794					0.2373321415841474
PLRRTEPP	8	Unmodified	_PLRRTEPP_					0	0	0			REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	MSMS	HCT116MG_D190212_S3	3	483.2806091308594	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.261	1	34.962	34.462	35.462	-0.29922								0	0	0	0.8837	1	13009	13009		10.183	0	1		+		24742	15396	15734	15820	23795	23795					0.061722958829250274
PLRSEGGPP	9	Unmodified	_PLRSEGGPP_					0	0	0		nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8;ZDHHC8|p.T459Rfs*177|6|0.31|ENSG00000099904|chr22:20142999-20142999|C/-|frameshift_variant	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MULTI-SECPEP	HCT116MG_D190212_S3	3	455.7351379394531	2	455.243067	908.47158	0.17783	8.0954E-05	-0.83385	-0.00037961	-0.65603	-0.00029865	455.24279357178676	24.347	0.20791	24.263	24.185	24.393	-0.083694					5	3	2	0	0	0	0.21559	1	8679	8679		19.439	1.304	1	2084600			24743	1645	15735	15821	23796	23796					0.013683277206155253
PLRSKLHCWLP	11	Unmodified	_PLRSKLHCWLP_					0	0	0		ERAP1|p.R127Lfs*48|1|0.4|ENSG00000164307|chr5:96803547-96803547|C/-|frameshift_variant	ERAP1|p.R127Lfs*48|1|0.4|ENSG00000164307|chr5:96803547-96803547|C/-|frameshift_variant	ERAP1|p.R127Lfs*48|1|0.4|ENSG00000164307|chr5:96803547-96803547|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	675.867919921875	2	675.379175	1348.7438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.468	1	45.468	44.968	45.968	0								0	0	0	0.95408	1	17228	17228		4.1895	1.1943	1				24744	9140	15736	15822	23797	23797					0.0833739347028768
PLRTEYAIP	9	Unmodified	_PLRTEYAIP_					0	0	0		ENSG00000187764|ENST00000422704|SEMA4D;SEMA4D|p.K567Qfs*65|1|0.26|ENSG00000187764|chr9:89379595-89379596|-/A|frameshift_variant;nc|ENSG00000187764|Q92854-2|SEMA4D	ENSG00000187764|ENST00000422704|SEMA4D	ENSG00000187764|ENST00000422704|SEMA4D	MULTI-MSMS	HCT116MG_D190212_S3	3	353.86553955078125	3	353.865958	1058.57605	0.019488	6.8961E-06	-0.065779	-2.3277E-05	-0.046292	-1.6381E-05	353.8658456960933	29.299	0.83308	29.078	28.473	29.306	-0.22195					30	15	3	0	0	0	0.24895	1	10556	10556		27.223	5.6331	1	21363000			24745	5958	15737	15823	23798	23798					0.04910029477309763
PLRTEYAIP	9	Unmodified	_PLRTEYAIP_					0	0	0		ENSG00000187764|ENST00000422704|SEMA4D;SEMA4D|p.K567Qfs*65|1|0.26|ENSG00000187764|chr9:89379595-89379596|-/A|frameshift_variant;nc|ENSG00000187764|Q92854-2|SEMA4D	ENSG00000187764|ENST00000422704|SEMA4D	ENSG00000187764|ENST00000422704|SEMA4D	MULTI-MSMS	HCT116MG_D190212_S4	4	353.86572265625	3	353.865958	1058.57605	-0.063696	-2.254E-05	-0.092931	-3.2885E-05	-0.15663	-5.5425E-05	353.86583676693874	29.446	0.57151	29.097	28.721	29.293	-0.34921					20	10	3	0	0	0	0.39784	1	10587	10587		16.566	2.951	1	6708900			24746	5958	15737	15823	23799	23799					0.04910029477309763
PLRTGAAR	8	Unmodified	_PLRTGAAR_					0	0	0			REV__ENST00000492931.5_1_20:43251503-43280248:-|nuORF	REV__ENST00000492931.5_1_20:43251503-43280248:-|nuORF	MSMS	HCT116MG_D190212_S4	4	421.2541198730469	2	421.253769	840.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.24	1	35.855	35.355	36.355	-0.38558								0	0	0	0.8837	1	13254	13254		2.5775	0	1		+		24747	16059	15738	15824	23800	23800					0.06635757539982023
PLRTSGTRPL	10	Unmodified	_PLRTSGTRPL_					0	0	0			REV__ENST00000504315.1_1_12:54422423-54422579:+|nuORF	REV__ENST00000504315.1_1_12:54422423-54422579:+|nuORF	MSMS	HCT116MG_D190212_S1	1	549.3231201171875	2	549.324922	1096.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.706	1	31.706	31.206	32.206	0								0	0	0	0.90023	1	11675	11675		15.847	2.3393	1		+		24748	16131	15739	15825	23801	23801					0.0908392549151813
PLRVKGKT	8	Unmodified	_PLRVKGKT_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2;REV__ENSG00000151150|ENST00000280772|ANK3;REV__KIAA0146-ANK1|4|fusion	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	HCT116MG_D190212_S2	2	900.5958251953125	1	898.583262	897.575986	1.0591	0.0009517	2.2141	0.0019896	3.2733	0.0029413	898.5807680490976	60.357	2.0609	60.202	59.291	61.352	-0.15441					123	40	4	0	0	0	0.8672	1	23446	23446		2.3027	0	1	18408000	+		24749	9934;12449;16925	15740	15826	23802	23802					0.12310074267998061
PLRWLIRLWPD	11	Unmodified	_PLRWLIRLWPD_					0	0	0			REV__MXRA5|p.P2176L|1|0.38|ENSG00000101825|chrX:3317154-3317154|G/A|missense_variant	REV__MXRA5|p.P2176L|1|0.38|ENSG00000101825|chrX:3317154-3317154|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	732.9259643554688	2	732.927346	1463.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.314	1	45.314	44.814	45.814	0								0	0	0	0.95636	1	17166	17166		2.9952	1.5133	1		+		24750	17048	15741	15827	23803	23803					0.12677284301889813
PLRYPMIM	8	Unmodified	_PLRYPMIM_					0	0	0		nc|ENSG00000181282|Q8NH89|OR5AK3P	nc|ENSG00000181282|Q8NH89|OR5AK3P	nc|ENSG00000181282|Q8NH89|OR5AK3P	MULTI-SECPEP	HCT116MG_D190212_S1	1	510.7900085449219	2	510.772091	1019.52963	0.34108	0.00017421	-0.88898	-0.00045407	-0.5479	-0.00027985	510.7715103301147	56.993	0.15535	56.993	56.893	57.049	0					4	2	2	0	0	0	0.32917	1	21896	21896		0.79363	0	1	4805200			24751	9567	15742	15828	23804	23804					0.020645500500449998
PLRYSVIMT	9	Unmodified	_PLRYSVIMT_					0	0	0		ENSG00000221970|ENST00000641044|OR2A1;ENSG00000212807|ENST00000641810|OR2A42	ENSG00000221970|ENST00000641044|OR2A1	ENSG00000221970|ENST00000641044|OR2A1	MSMS	HCT116MG_D190212_S4	4	540.3016967773438	2	540.299527	1078.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.466	1	39.086	38.586	39.586	-0.38055								0	0	0	0.76781	1	14501	14501		8.5933	0.68312	1				24752	6403	15743	15829	23805	23805					0.04835260122308682
PLSEGGYWMSA	11	Unmodified	_PLSEGGYWMSA_					0	0	0			REV__FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant	REV__FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	599.2677001953125	2	599.265881	1196.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.466	1	40.088	39.588	40.588	-0.37828								0	0	0	0.91433	1	14847	14847		18.146	4.2403	1		+		24753	16811	15744	15830	23806	23806					-0.0731881487931787
PLSHPRGREKP	11	Unmodified	_PLSHPRGREKP_					0	0	0		ENST00000343110.2_1_1:203456044-203456392:+|nuORF	ENST00000343110.2_1_1:203456044-203456392:+|nuORF	ENST00000343110.2_1_1:203456044-203456392:+|nuORF	MSMS	HCT116MG_D190212_S4	4	637.3599853515625	2	637.359828	1272.7051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.304	1	44.931	44.431	45.431	-0.37266								0	0	0	0.95636	1	16707	16707		2.9952	1.151	1				24754	7241	15745	15831	23807	23807					0.07965804160107837
PLSIAYSA	8	Unmodified	_PLSIAYSA_					0	0	0			REV__ENST00000259873.4_1_6:30585626-30587304:+|nuORF	REV__ENST00000259873.4_1_6:30585626-30587304:+|nuORF	MSMS	HCT116MG_D190212_S4	4	411.22247314453125	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.054	1	28.714	28.214	29.214	-0.34059								0	0	0	0.8837	1	10475	10475		14.582	0	1		+		24755	14620	15746	15832	23808	23808					0.015670220860897643
PLSIKPLVP	9	Unmodified	_PLSIKPLVP_					0	0	0			REV__nc|ENSG00000124789|P49790-2|NUP153	REV__nc|ENSG00000124789|P49790-2|NUP153	MSMS	HCT116MG_D190212_S4	4	482.3140563964844	2	482.315503	962.616454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.799	1	47.43	46.93	47.93	-0.36907								0	0	0	0.7689	1	17681	17681		4.756	0.42677	1		+		24756	11798	15747	15833	23809	23809					0.133649958677438
PLSISAAY	8	Unmodified	_PLSISAAY_					0	0	0		SERPINA4|p.A87T|1|0.14|ENSG00000100665|chr14:94563741-94563741|G/A|missense_variant;ENSG00000100665|ENST00000557004|SERPINA4	SERPINA4|p.A87T|1|0.14|ENSG00000100665|chr14:94563741-94563741|G/A|missense_variant	SERPINA4|p.A87T|1|0.14|ENSG00000100665|chr14:94563741-94563741|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	411.22259521484375	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.247	1	34.861	34.361	35.361	-0.38606								0	0	0	0.8837	1	12902	12902		9.3474	0	1				24757	1725	15748	15834	23810	23810					0.015670220860897643
PLSLEWFRS	9	Unmodified	_PLSLEWFRS_					0	0	0			REV__ENST00000548160.5_1_12:56119376-56119604:-|nuORF	REV__ENST00000548160.5_1_12:56119376-56119604:-|nuORF	MSMS	HCT116MG_D190212_S4	4	378.87042236328125	3	378.869591	1133.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.001	1	27.679	27.179	28.179	-0.32157								0	0	0	0.76575	1	10050	10050		10.8	2.644	1		+		24758	16413	15749	15835	23811	23811					0.025494318515939085
PLSQLKNSY	9	Unmodified	_PLSQLKNSY_					0	0	0			REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2846069335938	2	525.284931	1048.55531	0.35207	0.00018494	0.70992	0.00037291	1.062	0.00055785	525.2854132668183	39.16	0.52569	38.859	38.508	39.034	-0.30137					11	9	2	0	0	0	0.2853	1	14565	14565		32.305	8.2849	1	3622300	+		24759	11336	15750	15836	23812	23812					0.03297439097673305
PLSRGLLL	8	Unmodified	_PLSRGLLL_					0	0	0			REV__ENST00000596243.5_1_19:50382004-50382127:+|nuORF	REV__ENST00000596243.5_1_19:50382004-50382127:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	434.78448486328125	2	434.78437	867.554188	0.24554	0.00010676	-1.027	-0.00044654	-0.78149	-0.00033978	434.7841180545518	55.962	0.26131	55.674	55.518	55.779	-0.28773					7	4	2	0	0	0	0.76189	1	21252	21252		15.847	0	1	1652000	+		24760	16720	15751	15837	23813	23813					0.11511269519428424
PLSRRLHLV	9	Unmodified	_PLSRRLHLV_					0	0	0		ENST00000477440.6_1_3:57112609-57112699:-|nuORF	ENST00000477440.6_1_3:57112609-57112699:-|nuORF	ENST00000477440.6_1_3:57112609-57112699:-|nuORF	MSMS	HCT116MG_D190212_S4	4	364.1963195800781	3	364.232975	1089.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.83	1	36.445	35.945	36.945	-0.38486								0	0	0	0.76991	1	13493	13493		1.1933	0	1				24761	8212	15752	15838	23814	23814					0.13584525970691175
PLSSPLPGVP	10	Unmodified	_PLSSPLPGVP_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MSMS	HCT116MG_D190212_S4	4	482.2793273925781	2	482.279118	962.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.745	1	42.37	41.87	42.87	-0.37493								0	0	0	0.91906	1	15722	15722		11.64	0.52583	1				24762	4791	15753	15839	23815	23815					0.06091242074330694
PLSTETLP	8	Unmodified	_PLSTETLP_					0	0	0			REV__ENST00000586123.5_1_19:56657680-56658302:+|nuORF	REV__ENST00000586123.5_1_19:56657680-56658302:+|nuORF	MSMS	HCT116MG_D190212_S3	3	429.0885925292969	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.762	1	25.634	25.134	26.134	-0.12795								0	0	0	0.8837	1	9212	9212		15.768	0	1		+		24763	16655	15754	15840	23816	23816					0.02022987394957454
PLSVIETLRIH	11	Unmodified	_PLSVIETLRIH_					0	0	0			REV__ENSG00000153989|ENST00000368494|NUS1	REV__ENSG00000153989|ENST00000368494|NUS1	MSMS	HCT116MG_D190212_S4	4	639.3795776367188	2	639.382437	1276.75032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.968	1	40.591	40.091	41.091	-0.37732								0	0	0	0.95581	1	15050	15050		3.2813	0	1		+		24764	12665	15755	15841	23817	23817					0.12301609902647215
PLTAGTPV	8	Unmodified	_PLTAGTPV_					0	0	0		ENST00000607598.2_1_8:9413493-9414024:-|nuORF	ENST00000607598.2_1_8:9413493-9414024:-|nuORF	ENST00000607598.2_1_8:9413493-9414024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	755.430908203125	1	755.429781	754.422505	0.40276	0.00030426	0.26593	0.00020089	0.66869	0.00050515	755.4298464770596	32.078	0.25973	31.8	31.682	31.942	-0.27841					8	4	2	0	0	0	0.083541	1	11756	11756		98.807	28.092	1	6345000			24765	9121	15756	15842	23818	23818					0.03547039431657595
PLTAGTPV	8	Unmodified	_PLTAGTPV_					0	0	0		ENST00000607598.2_1_8:9413493-9414024:-|nuORF	ENST00000607598.2_1_8:9413493-9414024:-|nuORF	ENST00000607598.2_1_8:9413493-9414024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	755.4288940429688	1	755.429781	754.422505	0.42347	0.0003199	-0.43715	-0.00033023	-0.013673	-1.0329E-05	755.4290739927756	36.717	0.31224	36.416	36.197	36.509	-0.30113					8	5	2	0	0	0	0.083541	1	13587	13587		98.807	31.772	1	3610200			24766	9121	15756	15842	23819	23819					0.03547039431657595
PLTAGTPV	8	Unmodified	_PLTAGTPV_					0	0	0		ENST00000607598.2_1_8:9413493-9414024:-|nuORF	ENST00000607598.2_1_8:9413493-9414024:-|nuORF	ENST00000607598.2_1_8:9413493-9414024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	755.429931640625	1	755.429781	754.422505	0.73894	0.00055822	-0.33579	-0.00025367	0.40315	0.00030455	755.4293562334514	32.251	0.25948	31.875	31.694	31.953	-0.37529					7	4	2	0	0	0	0.083541	1	11746	11746		98.807	28.092	1	7732900			24767	9121	15756	15842	23820	23820					0.03547039431657595
PLTAGTPV	8	Unmodified	_PLTAGTPV_					0	0	0		ENST00000607598.2_1_8:9413493-9414024:-|nuORF	ENST00000607598.2_1_8:9413493-9414024:-|nuORF	ENST00000607598.2_1_8:9413493-9414024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	755.4298706054688	1	755.429781	754.422505	0.8677	0.00065549	-0.091457	-6.9089E-05	0.77625	0.0005864	755.4296280184087	36.834	0.25829	36.449	36.281	36.539	-0.38486					7	4	2	0	0	0	0.083541	1	13486	13486		98.807	31.772	1	3123900			24768	9121	15756	15842	23821	23821					0.03547039431657595
PLTANLNSY	9	Unmodified	_PLTANLNSY_					0	0	0		ENST00000579192.5_1_17:8198182-8198272:-|nuORF	ENST00000579192.5_1_17:8198182-8198272:-|nuORF	ENST00000579192.5_1_17:8198182-8198272:-|nuORF	MSMS	HCT116MG_D190212_S4	4	496.7558288574219	2	496.756007	991.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.424	1	34.038	33.538	34.538	-0.38558								0	0	0	0.76739	1	12569	12569		10.074	0.72649	1				24769	8945	15757	15843	23822	23822					0.0013717717222334613
PLTETSLP	8	Unmodified	_PLTETSLP_					0	0	0		ENST00000586123.5_1_19:56657680-56658302:+|nuORF	ENST00000586123.5_1_19:56657680-56658302:+|nuORF	ENST00000586123.5_1_19:56657680-56658302:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.0887451171875	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.293	1	26.981	26.481	27.481	-0.3114								0	0	0	0.8837	1	9763	9763		10.183	0	1				24770	8990	15758	15844	23823	23823					0.02022987394957454
PLTIKAAA	8	Unmodified	_PLTIKAAA_					0	0	0		ENST00000564295.1_1_16:56691699-56691999:+|nuORF;ENST00000334350.6_1_16:56691630-56693012:+|nuORF	ENST00000564295.1_1_16:56691699-56691999:+|nuORF	ENST00000564295.1_1_16:56691699-56691999:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	784.8749389648438	1	784.492716	783.485439	0.76024	0.00059641	-2.0504	-0.0016085	-1.2901	-0.0010121	784.4913229423494	51.639	0.20629	51.639	51.549	51.756	0					5	3	2	0	0	0	0.81097	2	19720	19720;19759		10.183	0	1	12150000			24771	7181	15759	15845	23824;23825	23824					0.0850360521968696
PLTIKAAA	8	Unmodified	_PLTIKAAA_					0	0	0		ENST00000564295.1_1_16:56691699-56691999:+|nuORF;ENST00000334350.6_1_16:56691630-56693012:+|nuORF	ENST00000564295.1_1_16:56691699-56691999:+|nuORF	ENST00000564295.1_1_16:56691699-56691999:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	784.492716	783.485439	0.8701	0.00068259	-3.1018	-0.0024333	-2.2317	-0.0017507	784.4902251352222	51.786	0.67407	51.436	51.046	51.72	-0.35028	-0.10157	-6.4733E-05	NaN	10.183	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6416900			24772	7181	15759	15845							0.0850360521968696
PLTKKEKKVL	10	Unmodified	_PLTKKEKKVL_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MSMS	HCT116MG_D190212_S1	1	395.2651062011719	3	395.263941	1182.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.315	1	20.315	19.815	20.815	0								0	0	0	0.96291	1	7093	7093		0.77653	0.27058	1				24773	4097	15760	15846	23826	23826					0.18591985913417375
PLTLPLSPQ	9	Unmodified	_PLTLPLSPQ_					0	0	0			REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1	REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1	MSMS	HCT116MG_D190212_S4	4	483.2880554199219	2	483.286943	964.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.474	1	45.101	44.601	45.601	-0.37266								0	0	0	0.24841	1	16776	16776		43.858	3.901	1		+		24774	17247	15761	15847	23827	23827					0.07563528591379054
PLTLSKLG	8	Unmodified	_PLTLSKLG_					0	0	0		ENST00000295226.1_1_2:223168979-223169048:+|nuORF	ENST00000295226.1_1_2:223168979-223169048:+|nuORF	ENST00000295226.1_1_2:223168979-223169048:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	828.5159912109375	1	828.518931	827.511654	0.75669	0.00062693	-3.1187	-0.0025839	-2.362	-0.001957	828.5163553691649	51.678	0.25518	51.678	51.5	51.756	0					6	4	2	0	0	0	0.81097	1	19774	19774		10.183	0	1	12920000			24775	6974	15762	15848	23828	23828					0.09099874391176854
PLTLTTLA	8	Unmodified	_PLTLTTLA_					0	0	0		tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	415.25372314453125	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.109	1	60.96	60.46	61.46	-0.14852								0	0	0	0.8837	1	23664	23664		2.8892	0	1				24776	18433	15763	15849	23829	23829					0.07456168154283205
PLTLTTLA	8	Unmodified	_PLTLTTLA_					0	0	0		tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	tr|U7STB3|U7STB3_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00993PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	415.25384521484375	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.064	1	60.804	60.304	61.304	-0.2602								0	0	0	0.8837	1	23026	23026		2.8892	0	1				24777	18433	15763	15849	23830	23830					0.07456168154283205
PLTQLVAT	8	Unmodified	_PLTQLVAT_					0	0	0			REV__ENSG00000104808|ENST00000221403|DHDH	REV__ENSG00000104808|ENST00000221403|DHDH	MSMS	HCT116MG_D190212_S4	4	421.7513122558594	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.405	1	44.031	43.531	44.531	-0.37373								0	0	0	0.8837	1	16358	16358		2.5775	0	1		+		24778	11219	15764	15850	23831	23831					0.06383284011508294
PLTRILKLWKA	11	Unmodified	_PLTRILKLWKA_					0	0	0		RASSF9|p.D105Rfs*2|1|0.4|ENSG00000198774|chr12:85805698-85805699|-/C|frameshift_variant;RASSF9|p.K139Nfs*11|1|0.07|ENSG00000198774|chr12:85805593-85805593|T/-|frameshift_variant;RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant;RASSF9|p.E309Vfs*9|1|0.05|ENSG00000198774|chr12:85805084-85805085|-/AAATA|frameshift_variant;ENSG00000198774|ENST00000361228|RASSF9	RASSF9|p.D105Rfs*2|1|0.4|ENSG00000198774|chr12:85805698-85805699|-/C|frameshift_variant	RASSF9|p.D105Rfs*2|1|0.4|ENSG00000198774|chr12:85805698-85805699|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	669.934814453125	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.336	1	44.029	43.529	44.529	-0.30759								0	0	0	0.95925	1	16571	16571		1.4819	0	1				24779	6269	15765	15851	23832	23832					0.19931356450024396
PLTRILKLWKA	11	Unmodified	_PLTRILKLWKA_					0	0	0		RASSF9|p.D105Rfs*2|1|0.4|ENSG00000198774|chr12:85805698-85805699|-/C|frameshift_variant;RASSF9|p.K139Nfs*11|1|0.07|ENSG00000198774|chr12:85805593-85805593|T/-|frameshift_variant;RASSF9|p.L310Sfs*7|1|0.05|ENSG00000198774|chr12:85805082-85805083|-/AAAGAGA|frameshift_variant;RASSF9|p.E309Vfs*9|1|0.05|ENSG00000198774|chr12:85805084-85805085|-/AAATA|frameshift_variant;ENSG00000198774|ENST00000361228|RASSF9	RASSF9|p.D105Rfs*2|1|0.4|ENSG00000198774|chr12:85805698-85805699|-/C|frameshift_variant	RASSF9|p.D105Rfs*2|1|0.4|ENSG00000198774|chr12:85805698-85805699|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	669.9357299804688	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.521	1	53.218	52.718	53.718	-0.30305								0	0	0	0.95925	1	20259	20259		1.4819	0	1				24780	6269	15765	15851	23833	23833					0.19931356450024396
PLTSCSSRFWL	11	Unmodified	_PLTSCSSRFWL_					0	0	0			REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	MSMS	HCT116MG_D190212_S1	1	432.88525390625	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8191	1	6.8191	6.3191	7.3191	0								0	0	0	0.96111	1	2058	2058		0.50596	0.23694	1		+		24781	10872	15766	15852	23834	23834					-0.002748713086020871
PLTVEILP	8	Unmodified	_PLTVEILP_					0	0	0		ENST00000547374.5_1_14:105678371-105685686:-|nuORF	ENST00000547374.5_1_14:105678371-105685686:-|nuORF	ENST00000547374.5_1_14:105678371-105685686:-|nuORF	MSMS	HCT116MG_D190212_S4	4	441.2692565917969	2	441.270761	880.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.712	1	44.339	43.839	44.839	-0.37326								0	0	0	0.8837	1	16481	16481		11.114	0	1				24782	8733	15767	15853	23835	23835					0.08192741188372565
PLVILVPLE	9	Unmodified	_PLVILVPLE_					0	0	0		ENST00000343979.5_1_19:12299097-12299355:+|nuORF	ENST00000343979.5_1_19:12299097-12299355:+|nuORF	ENST00000343979.5_1_19:12299097-12299355:+|nuORF	MSMS	HCT116MG_D190212_S1	1	496.82318115234375	2	496.823161	991.631769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.902	1	11.902	11.402	12.402	0								0	0	0	0.77025	1	3786	3786		0	0	1				24783	7250	15768	15854	23836	23836					0.1356186266492614
PLVISHQAT	9	Unmodified	_PLVISHQAT_					0	0	0			REV__nc|ENSG00000138674|O94979-5|SEC31A	REV__nc|ENSG00000138674|O94979-5|SEC31A	MSMS	HCT116MG_D190212_S1	1	483.2740173339844	2	483.274367	964.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.474	1	23.474	22.974	23.974	0								0	0	0	0.71969	1	8361	8361		18.135	0	1		+		24784	12236	15769	15855	23837	23837					0.05049473788801606
PLVKRNPLF	9	Unmodified	_PLVKRNPLF_					0	0	0			REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MSMS	HCT116MG_D190212_S2	2	542.7698364257812	2	542.337301	1082.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.2	1	54.01	53.51	54.51	-0.1894								0	0	0	0.7676	1	20861	20861		9.3474	0	1		+		24785	16674	15770	15856	23838	23838					0.12202605364882402
PLVKVVPLVAL	11	Unmodified	_PLVKVVPLVAL_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MSMS	HCT116MG_D190212_S2	2	383.2638854980469	3	383.265282	1146.77402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.402	1	61.26	60.76	61.76	-0.14227								0	0	0	0.96111	1	23782	23782		0.50596	0	1		+		24786	12938	15771	15857	23839	23839					0.20650075407138502
PLVLHTAI	8	Unmodified	_PLVLHTAI_					0	0	0			REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	MSMS	HCT116MG_D190212_S2	2	432.2705993652344	2	432.271096	862.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.383	1	27.037	26.537	27.537	-0.34629								0	0	0	0.8837	1	9944	9944		6.3541	0	1		+		24787	12777	15772	15858	23840	23840					0.09087580628079195
PLVLKLKKLV	10	Unmodified	_PLVLKLKKLV_					0	0	0		MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant;MX1|p.M372Cfs*4|1|0.37|ENSG00000157601|chr21:41445548-41445548|A/-|frameshift_variant;nc|ENSG00000157601|P20591-2|MX1;ENSG00000157601|ENST00000398598|MX1	MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant	MX1|p.G282Afs*9|1|0.29|ENSG00000157601|chr21:41441827-41441827|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	576.1564331054688	2	575.917927	1149.8213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.303	1	38.21	37.71	38.71	-0.09301								0	0	0	0.96291	1	14385	14385		1.8442	1.4435	1				24788	4335	15773	15859	23841	23841					0.252383546781175
PLVLRRQYLRR	11	Unmodified	_PLVLRRQYLRR_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MSMS	HCT116MG_D190212_S1	1	735.4620361328125	2	735.462419	1468.91028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.34	1	60.34	59.84	60.84	0								0	0	0	0.96003	1	23258	23258		1.0715	0.76443	1				24789	975	15774	15860	23842	23842					0.19458582690344883
PLVNSKSL	8	Unmodified	_PLVNSKSL_					0	0	0			REV__CEP126|p.Q538Tfs*5|2|0.29|ENSG00000110318|chr11:101962641-101962642|-/A|frameshift_variant	REV__CEP126|p.Q538Tfs*5|2|0.29|ENSG00000110318|chr11:101962641-101962642|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	429.0882263183594	2	429.258185	856.501818	-0.070473	-3.0251E-05	-1.5463	-0.00066378	-1.6168	-0.00069403	429.25776862358896	42.962	0.57343	42.962	42.639	43.212	0					14	10	2	0	0	0	0.33409	1	16106	16106		0	0	1	3674400	+		24790	10155	15775	15861	23843	23843					0.06782686385793113
PLVRQLNKLLT	11	Unmodified	_PLVRQLNKLLT_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;ENST00000487204.1_1_X:50085140-50094699:+|nuORF;nc|ENSG00000147082|Q8WWL7-2|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MSMS	HCT116MG_D190212_S4	4	432.27203369140625	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.831	1	41.455	40.955	41.955	-0.37637								0	0	0	0.95954	1	15352	15352		1.3296	0	1				24791	3969	15776	15862	23844	23844					0.1781017569069263
PLVRRRKRRF	10	Unmodified	_PLVRRRKRRF_					0	0	0		ENSG00000186479|ENST00000334025|RGS7BP	ENSG00000186479|ENST00000334025|RGS7BP	ENSG00000186479|ENST00000334025|RGS7BP	MSMS	HCT116MG_D190212_S3	3	692.45068359375	2	692.449646	1382.88474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.645	1	60.399	59.899	60.899	-0.24588								0	0	0	0.97116	1	23127	23127		0	0	1				24792	5888	15777	15863	23845	23845					0.20861152958559614
PLVSPDPP	8	Unmodified	_PLVSPDPP_					0	0	0		PLXNB1|p.L900Sfs*25|1|0.11|ENSG00000164050|chr3:48419592-48419592|G/-|frameshift_variant;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1	PLXNB1|p.L900Sfs*25|1|0.11|ENSG00000164050|chr3:48419592-48419592|G/-|frameshift_variant	PLXNB1|p.L900Sfs*25|1|0.11|ENSG00000164050|chr3:48419592-48419592|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	411.2221984863281	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.516	1	34.13	33.63	34.63	-0.38558								0	0	0	0.8837	1	12606	12606		6.3541	0	1				24793	4660	15778	15864	23846	23846					0.015670220860897643
PLVVAYAI	8	Unmodified	_PLVVAYAI_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;IREB2|p.F724Lfs*48|1|0.13|ENSG00000136381|chr15:78490512-78490512|T/-|frameshift_variant;ENST00000559676.1_1_15:78777183-78780743:+|nuORF	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MSMS	HCT116MG_D190212_S2	2	423.260498046875	2	423.260197	844.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.648	1	31.4	30.9	31.9	-0.24883								0	0	0	0.8837	1	11682	11682		6.3541	0	1				24794	3413	15779	15865	23847	23847					0.07736775879493507
PLVVKFRWFF	10	Unmodified	_PLVVKFRWFF_					0	0	0		HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	446.9288330078125	3	446.928893	1337.76485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2856	1	2.2856	1.7856	2.7856	0								0	0	0	0.97116	1	691	691		0	0	1				24795	4326	15780	15866	23848	23848					0.10947726841436634
PLVVKFRWFF	10	Unmodified	_PLVVKFRWFF_					0	0	0		HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	447.09942626953125	3	446.928893	1337.76485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.59927	1	0.59533	0.09533	1.0953	-0.0039395								0	0	0	0.97116	1	196	196		0	0	1				24796	4326	15780	15866	23849	23849					0.10947726841436634
PLVVKFRWFF	10	Unmodified	_PLVVKFRWFF_					0	0	0		HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	447.34698486328125	3	446.928893	1337.76485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.71256	1	0.7063	0.2063	1.2063	-0.00626								0	0	0	0.97116	1	239	239		0	0	1				24797	4326	15780	15866	23850	23850					0.10947726841436634
PLVVKFRWFF	10	Unmodified	_PLVVKFRWFF_					0	0	0		HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	446.9294738769531	3	446.928893	1337.76485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.88874	1	0.88248	0.38248	1.3825	-0.00626								0	0	0	0.97116	1	295	295		0	0	1				24798	4326	15780	15866	23851	23851					0.10947726841436634
PLVVKFRWFF	10	Unmodified	_PLVVKFRWFF_					0	0	0		HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant;HYDIN|p.I1986Nfs*6|1|0.45|ENSG00000157423|chr16:70961970-70961971|-/T|frameshift_variant;HYDIN|p.E2653Kfs*4|1|0.27|ENSG00000157423|chr16:70918259-70918259|T/-|frameshift_variant;HYDIN|p.V3416Gfs*64|1|0.15|ENSG00000157423|chr16:70879725-70879726|-/ACTCC|frameshift_variant;HYDIN|p.F4256Vfs*111|1|0.27|ENSG00000157423|chr16:70849833-70849834|-/C|frameshift_variant;ENSG00000157423|ENST00000393567|HYDIN	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	447.0993957519531	3	446.928893	1337.76485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.116	1	1.1097	0.60971	1.6097	-0.0062599								0	0	0	0.97116	1	360	360		0	0	1				24799	4326	15780	15866	23852	23852					0.10947726841436634
PLWFPFKTL	9	Unmodified	_PLWFPFKTL_					0	0	0			REV__ENST00000419303.5_1_22:22348995-22398182:-|nuORF	REV__ENST00000419303.5_1_22:22348995-22398182:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	383.5547790527344	3	383.554944	1147.643	-0.12402	-4.757E-05	-0.35026	-0.00013434	-0.47428	-0.00018191	383.55480755845605	45.565	0.35993	45.473	45.256	45.616	-0.092472					10	6	2	0	0	0	0.47809	1	17332	17332		18.146	18.146	1	29616000	+		24800	15506	15781	15867	23853	23853					0.07508684759091011
PLWPRGTL	8	Unmodified	_PLWPRGTL_					0	0	0			REV__ENST00000337894.8_1_1:203096848-203097443:+|nuORF	REV__ENST00000337894.8_1_1:203096848-203097443:+|nuORF	MSMS	HCT116MG_D190212_S1	1	470.2757568359375	2	470.27417	938.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.22	1	42.22	41.72	42.72	0								0	0	0	0.8837	1	15918	15918		10.183	0	1		+		24801	14956	15782	15868	23854	23854					0.06206098859627218
PLWRHWRRETY	11	Unmodified	_PLWRHWRRETY_					0	0	0		nc|ENSG00000168907|Q68DD2-2|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	MSMS	HCT116MG_D190212_S3	3	800.4198608398438	2	800.418208	1598.82186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.415	1	30.165	29.665	30.665	-0.24946								0	0	0	0.95925	1	11083	11083		1.4819	0.15237	1				24802	5038	15783	15869	23855	23855					0.04640542379888757
PLWSRIPV	8	Unmodified	_PLWSRIPV_					0	0	0		ENST00000570415.5_1_17:3626633-3631480:-|nuORF	ENST00000570415.5_1_17:3626633-3631480:-|nuORF	ENST00000570415.5_1_17:3626633-3631480:-|nuORF	MSMS	HCT116MG_D190212_S4	4	484.29132080078125	2	484.28982	966.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.533	1	45.16	44.66	45.66	-0.37266								0	0	0	0.8837	1	16800	16800		10.183	0.83596	1				24803	8890	15784	15870	23856	23856					0.08046671893714574
PLYCQRNW	8	Unmodified	_PLYCQRNW_					0	0	0			REV__FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	REV__FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	539.7252807617188	2	540.258194	1078.50183	0.4762	0.00025727	-0.3544	-0.00019147	0.12179	6.58E-05	540.2579263247271	19.291	0.46932	18.922	18.575	19.044	-0.3695					13	8	3	0	0	0	0.32538	1	6553	6553		9.3474	1.4373	1	31387000	+		24804	16836	15785	15871	23857	23857					-0.03427636885840002
PLYLGGLP	8	Unmodified	_PLYLGGLP_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MSMS	HCT116MG_D190212_S2	2	415.24359130859375	2	415.244547	828.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.337	1	34.162	33.662	34.662	-0.17512								0	0	0	0.8837	1	12771	12771		6.3541	0	1				24805	3095	15786	15872	23858	23858					0.05344202845424206
PLYLGGLP	8	Unmodified	_PLYLGGLP_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MSMS	HCT116MG_D190212_S3	3	415.2440490722656	2	415.244547	828.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.438	1	34.144	33.644	34.644	-0.29419								0	0	0	0.8837	1	12676	12676		2.8892	0	1				24806	3095	15786	15872	23859	23859					0.05344202845424206
PLYLGGLP	8	Unmodified	_PLYLGGLP_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MSMS	HCT116MG_D190212_S4	4	415.2439880371094	2	415.244547	828.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.567	1	34.182	33.682	34.682	-0.38558								0	0	0	0.8837	1	12627	12627		2.8892	0	1				24807	3095	15786	15872	23860	23860					0.05344202845424206
PLYRNRIRGVA	11	Unmodified	_PLYRNRIRGVA_					0	0	0			REV__ENST00000609118.1_1_1:111506079-111506259:+|nuORF	REV__ENST00000609118.1_1_1:111506079-111506259:+|nuORF	MSMS	HCT116MG_D190212_S1	1	657.8904418945312	2	657.891295	1313.76804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.545	1	20.545	20.045	21.045	0								0	0	0	0.93717	1	7186	7186		13.042	6.3193	1		+		24808	16788	15787	15873	23861	23861					0.12370369948143889
PLYYKRFLTFL	11	Unmodified	_PLYYKRFLTFL_					0	0	0			REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	REV__RALGAPA2|p.L1495Rfs*46|1|0.07|ENSG00000188559|chr20:20512885-20512885|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	730.8226928710938	2	730.918655	1459.82276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.511	1	26.511	26.011	27.011	0								0	0	0	0.95581	1	9582	9582		3.2813	0.54611	1		+		24809	13958	15788	15874	23862	23862					0.11123943976213013
PMGWRGRLH	9	Unmodified	_PMGWRGRLH_					0	0	0		KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	555.2916259765625	2	555.292902	1108.57125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.607	1	48.291	47.791	48.791	-0.31596								0	0	0	0.7689	1	18286	18286		4.756	0	1				24810	9260	15789	15875	23863	23863					0.02130866853576663
PMIKKIAF	8	Unmodified	_PMIKKIAF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.S472Ffs*13|1|0.23|ENSG00000080345|chr2:151437275-151437276|-/T|frameshift_variant;RIF1|p.S472Pfs*34|1|0.3|ENSG00000080345|chr2:151437276-151437276|T/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S2	2	474.7916564941406	2	474.290974	946.567395	0.29492	0.00013988	-0.25558	-0.00012122	0.039338	1.8658E-05	474.2907927453474	51.415	2.2168	51.236	50.5	52.717	-0.17868					55	42	2	0	0	0	0.84759	1	19665	19665		5.7604	0	1	31773000			24811	1393	15790	15876	23864	23864					0.09197384307140055
PMIKKIAF	8	Unmodified	_PMIKKIAF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant;RIF1|p.S472Ffs*13|1|0.23|ENSG00000080345|chr2:151437275-151437276|-/T|frameshift_variant;RIF1|p.S472Pfs*34|1|0.3|ENSG00000080345|chr2:151437276-151437276|T/-|frameshift_variant;RIF1|p.S692Qfs*10|1|0.13|ENSG00000080345|chr2:151445420-151445420|T/-|frameshift_variant;RIF1|p.S692Ffs*15|1|0.43|ENSG00000080345|chr2:151445419-151445420|-/T|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	HCT116MG_D190212_S4	4	474.2905578613281	2	474.290974	946.567395	0.3857	0.00018293	-0.19433	-9.217E-05	0.19137	9.0764E-05	474.2908133608152	52.095	1.4535	51.75	50.895	52.348	-0.34538					46	27	2	0	0	0	0.86388	1	19170	19170		2.8892	0	1	16668000			24812	1393	15790	15876	23865	23865					0.09197384307140055
PMKQLDIQP	9	Unmodified	_PMKQLDIQP_					0	0	0			REV__ENST00000490921.5_1_1:226555150-226558263:-|nuORF	REV__ENST00000490921.5_1_1:226555150-226558263:-|nuORF	MSMS	HCT116MG_D190212_S1	1	357.19598388671875	3	357.195198	1068.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.503	1	58.503	58.003	59.003	0								0	0	0	0.76973	1	22538	22538		0.96228	0	1		+		24813	16034	15791	15877	23866	23866					0.03222669742626749
PMLAKKFV	8	Unmodified	_PMLAKKFV_					0	0	0			REV__nc|ENSG00000152953|Q9NY57-2|STK32B	REV__nc|ENSG00000152953|Q9NY57-2|STK32B	MSMS	HCT116MG_D190212_S4	4	467.2831726074219	2	467.283149	932.551745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.843	1	45.471	44.971	45.971	-0.37206								0	0	0	0.8837	1	16926	16926		2.8892	0	1		+		24814	12640	15792	15878	23867	23867					0.08277097790119115
PMLPRGPPD	9	Unmodified	_PMLPRGPPD_					0	0	0		ENSG00000205116|ENST00000378821|TMEM88B	ENSG00000205116|ENST00000378821|TMEM88B	ENSG00000205116|ENST00000378821|TMEM88B	MSMS	HCT116MG_D190212_S2	2	490.2289733886719	2	490.25512	978.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.802	1	18.439	17.939	18.939	-0.36325								0	0	0	0.46109	1	6484	6484		30.637	3.0077	1				24815	6369	15793	15879	23868	23868					0.005578448826327076
PMPKQLLQLI	10	Unmodified	_PMPKQLLQLI_					0	0	0			REV__nc|ENSG00000173826|Q9H252-2|KCNH6	REV__nc|ENSG00000173826|Q9H252-2|KCNH6	MSMS	HCT116MG_D190212_S1	1	394.2435607910156	3	394.24226	1179.70495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.506	1	41.506	41.006	42.006	0								0	0	0	0.95179	1	15630	15630		2.086	0	1		+		24816	13456	15794	15880	23869	23869					0.12228668115926666
PMPKQLLQLI	10	Unmodified	_PMPKQLLQLI_					0	0	0			REV__nc|ENSG00000173826|Q9H252-2|KCNH6	REV__nc|ENSG00000173826|Q9H252-2|KCNH6	MSMS	HCT116MG_D190212_S4	4	394.2433166503906	3	394.24226	1179.70495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.876	1	41.5	41	42	-0.37637								0	0	0	0.95179	1	15370	15370		2.086	0.63089	1		+		24817	13456	15794	15880	23870	23870					0.12228668115926666
PMPVRRSWLM	10	Unmodified	_PMPVRRSWLM_					0	0	0		SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant;SPATA31E1|p.S1369Kfs*11|1|0.12|ENSG00000177992|chr9:87888593-87888594|GC/-|frameshift_variant;ENSG00000177992|ENST00000325643|SPATA31E1	SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	424.8967590332031	3	424.894977	1271.6631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.738	1	10.738	10.238	11.238	0								0	0	0	0.96769	1	3317	3317		0.77653	0.50751	1				24818	5481	15795	15881	23871	23871					0.038137891557425974
PNAEVIRP	8	Unmodified	_PNAEVIRP_					0	0	0			REV__ENST00000440593.3_1_19:13255325-13260573:-|nuORF	REV__ENST00000440593.3_1_19:13255325-13260573:-|nuORF	MSMS	HCT116MG_D190212_S3	3	448.2540588378906	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.443	1	29.208	28.708	29.708	-0.23464								0	0	0	0.8837	1	10697	10697		5.2307	0	1		+		24819	15642	15796	15882	23872	23872					0.04084918100295454
PNAVPKACCAP	11	Unmodified	_PNAVPKACCAP_					0	0	0		ENSG00000183682|ENST00000331593|BMP8A	ENSG00000183682|ENST00000331593|BMP8A	ENSG00000183682|ENST00000331593|BMP8A	MULTI-MSMS	HCT116MG_D190212_S2	2	357.5088195800781	3	357.5089	1069.50487	-0.53117	-0.0001899	0.31994	0.00011438	-0.21123	-7.5517E-05	357.50900663181517	18.762	0.20775	18.399	18.269	18.477	-0.36325					5	3	2	0	0	0	0.74191	1	6495	6495		2.6312	2.6312	1	9383100			24820	5733	15797	15883	23873	23873					-0.02710129823344687
PNEPDSQKYR	10	Unmodified	_PNEPDSQKYR_					0	0	0			REV__TKTL1|p.V393Yfs*16|1|0.56|ENSG00000007350|chrX:154320901-154320901|G/-|frameshift_variant	REV__TKTL1|p.V393Yfs*16|1|0.56|ENSG00000007350|chrX:154320901-154320901|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	617.2977294921875	2	617.296559	1232.57856	0.73264	0.00045225	-0.24258	-0.00014974	0.49006	0.00030251	617.296531306053	24.784	0.77872	24.515	24.082	24.861	-0.26881					22	14	3	0	0	0	0.81464	1	8707	8707		10.8	2.0541	1	5288900	+		24821	10495	15798	15884	23874	23874					-0.028421668556802615
PNFQEMVNR	9	Unmodified	_PNFQEMVNR_					0	0	0			REV__BAIAP2L1|p.N36Ifs*6|1|0.24|ENSG00000006453|chr7:98362382-98362382|C/-|frameshift_variant	REV__BAIAP2L1|p.N36Ifs*6|1|0.24|ENSG00000006453|chr7:98362382-98362382|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	378.8501281738281	3	378.850202	1133.52878	-0.10785	-4.0857E-05	-0.05291	-2.0045E-05	-0.16076	-6.0902E-05	378.8501368073861	15.692	0.67666	15.778	15.612	16.289	0.085424					16	12	2	0	0	0	0.60612	1	5163	5163		10.8	0.64894	1	3275800	+		24822	10031	15799	15885	23875	23875					-0.032645730653030114
PNHTKTTT	8	Unmodified	_PNHTKTTT_					0	0	0			REV__IGSF10|p.K1527Rfs*29|1|0.18|ENSG00000152580|chr3:151445403-151445403|G/-|frameshift_variant	REV__IGSF10|p.K1527Rfs*29|1|0.18|ENSG00000152580|chr3:151445403-151445403|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	450.23333740234375	2	450.232699	898.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.634	1	42.634	42.134	43.134	0								0	0	0	0.8837	1	16086	16086		7.9102	2.6795	1		+		24823	12632	15800	15886	23876	23876					-0.0024426265906640765
PNKEKLNYFGP	11	Unmodified	_PNKEKLNYFGP_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MSMS	HCT116MG_D190212_S4	4	653.8410034179688	2	653.843145	1305.67174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.269	1	29.912	29.412	30.412	-0.3571								0	0	0	0.94416	1	10966	10966		9.3831	1.7742	1		+		24824	11130	15801	15887	23877	23877					0.031127575975460786
PNNCEEEEGC	10	Unmodified	_PNNCEEEEGC_					0	0	0			REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant	REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1123.36767578125	1	1123.36666	1122.35939	0.4392	0.00049338	0.38037	0.0004273	0.81957	0.00092068	1123.3669667985246	18.136	0.26095	17.78	17.65	17.91	-0.35647					6	4	2	0	0	0	0.88076	1	6243	6243		3.2813	0.70383	1	6588800	+		24825	9850	15802	15888	23878	23878					-0.1968968220082843
PNNCEEEEGC	10	Unmodified	_PNNCEEEEGC_					0	0	0			REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant	REV__ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1123.36666	1122.35939	0.73554	0.00082628	0.12362	0.00013888	0.85917	0.00096516	1123.3671537438513	17.854	0.26065	17.854	17.724	17.985	0	0.037095	-0.00024411	NaN	3.2813	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6642500	+		24826	9850	15802	15888							-0.1968968220082843
PNPRQEVAF	9	Unmodified	_PNPRQEVAF_					0	0	0			REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	MSMS	HCT116MG_D190212_S4	4	353.1856689453125	3	353.185691	1056.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.726	1	34.34	33.84	34.84	-0.38582								0	0	0	0.76818	1	12691	12691		4.5289	1.4566	1		+		24827	12461	15803	15889	23879	23879					0.009236881576953238
PNVGLWALYR	10	Unmodified	_PNVGLWALYR_					0	0	0		nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000521786.5_1_5:153570426-153599110:+|nuORF;nc|ENSG00000164574|Q86SR1-3|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	MSMS	HCT116MG_D190212_S4	4	594.832275390625	2	594.82984	1187.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.807	1	52.467	51.967	52.967	-0.34023								0	0	0	0.94339	1	19697	19697		6.2058	0.47393	1				24828	4702	15804	15890	23880	23880					0.058811134968891565
PNVLLLIDGIF	11	Unmodified	_PNVLLLIDGIF_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6-4|MYO16	REV__nc|ENSG00000041515|Q9Y6X6-4|MYO16	MSMS	HCT116MG_D190212_S2	2	405.24578857421875	3	405.244547	1212.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.013	1	48.859	48.359	49.359	-0.15405								0	0	0	0.95954	1	18745	18745		0.45452	0.1855	1		+		24829	10590	15805	15891	23881	23881					0.11396304268123458
PPAAPRFN	8	Unmodified	_PPAAPRFN_					0	0	0		ENST00000503636.1_1_4:76861152-76862102:-|nuORF;nc|ENSG00000138744|Q02083-3|NAAA;nc|ENSG00000138744|Q02083-2|NAAA;ENSG00000138744|ENST00000286733|NAAA	ENST00000503636.1_1_4:76861152-76862102:-|nuORF	ENST00000503636.1_1_4:76861152-76862102:-|nuORF	MSMS	HCT116MG_D190212_S2	2	434.8822937011719	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.449	1	12.152	11.652	12.652	-0.29721								0	0	0	0.8837	1	4070	4070		0.79363	0.10326	1				24830	3582	15806	15892	23882	23882					0.01604666274374722
PPATLPPE	8	Unmodified	_PPATLPPE_					0	0	0		ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	MSMS	HCT116MG_D190212_S1	1	411.22247314453125	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.137	1	42.137	41.637	42.637	0								0	0	0	0.8837	1	15885	15885		2.5775	0	1				24831	5109	15807	15893	23883	23883					0.015670220860897643
PPCPACPF	8	Unmodified	_PPCPACPF_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.S3597Rfs*6|1|0.1|ENSG00000179532|chr11:6565718-6565719|-/AG|frameshift_variant;DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant;DNHD1|p.Q530Tfs*14|1|0.11|ENSG00000179532|chr11:6519794-6519795|-/ACTCGCTC|frameshift_variant;nc|ENSG00000179532|Q96M86-4|DNHD1;DNHD1|p.R1358Afs*11|1|0.16|ENSG00000179532|chr11:6545007-6545007|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MSMS	HCT116MG_D190212_S2	2	416.2061462402344	2	416.180035	830.345517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.004	1	37.911	37.411	38.411	-0.09301								0	0	0	0.8837	1	14264	14264		6.3541	0	1				24832	5560	15808	15894	23884	23884					-0.07644218380676193
PPDCHGHG	8	Unmodified	_PPDCHGHG_					0	0	0		ENST00000564397.5_1_16:5077177-5078281:-|nuORF;ENST00000568202.5_1_16:5075546-5083878:-|nuORF;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA	ENST00000564397.5_1_16:5077177-5078281:-|nuORF	ENST00000564397.5_1_16:5077177-5078281:-|nuORF	MSMS	HCT116MG_D190212_S1	1	410.1639404296875	2	410.163762	818.312971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.723	1	33.723	33.223	34.223	0								0	0	0	0.8837	1	12490	12490		0.79363	0	1				24833	1878	15809	15895	23885	23885					-0.103452894593147
PPDLPHPW	8	Unmodified	_PPDLPHPW_					0	0	0		ENST00000472654.1_1_X:48933860-48934482:-|nuORF	ENST00000472654.1_1_X:48933860-48934482:-|nuORF	ENST00000472654.1_1_X:48933860-48934482:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	479.7428283691406	2	479.742702	957.470852	0.15437	7.4058E-05	-0.5507	-0.00026419	-0.39633	-0.00019013	479.74261738703825	32.693	0.31238	32.693	32.43	32.742	0					8	5	2	0	0	0	0.76257	1	12080	12080		15.768	15.768	1	6175400			24834	8175	15810	15896	23886	23886					-0.009584669284436131
PPDWASAPP	9	Unmodified	_PPDWASAPP_					0	0	0		ENST00000527832.5_1_11:724661-726978:+|nuORF	ENST00000527832.5_1_11:724661-726978:+|nuORF	ENST00000527832.5_1_11:724661-726978:+|nuORF	MSMS	HCT116MG_D190212_S2	2	469.3287048339844	2	469.224342	936.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.863	1	26.51	26.01	27.01	-0.35254								0	0	0	0.76669	1	9736	9736		12.532	1.7076	1				24835	8598	15811	15897	23887	23887					-0.03662763545003145
PPELQAFVREA	11	Unmodified	_PPELQAFVREA_					0	0	0			REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	628.8350830078125	2	628.83532	1255.65609	0.54791	0.00034455	-1.2267	-0.00077137	-0.67875	-0.00042682	629.3357228614004	51.247	0.30928	51.247	51.04	51.349	0					8	5	2	0	0	0	0.36512	1	19598	19598		5.2969	0	1	16802000	+		24836	14721	15812	15898	23888	23888					0.03848471080505078
PPETGDMST	9	Unmodified	_PPETGDMST_					0	0	0			REV__ENSG00000167565|ENST00000322354|SERTAD3	REV__ENSG00000167565|ENST00000322354|SERTAD3	MULTI-MSMS	HCT116MG_D190212_S1	1	467.6948547363281	2	467.694758	933.374962	0.22512	0.00010529	-0.067285	-3.1469E-05	0.15784	7.382E-05	467.69464315312234	21.828	0.67812	21.828	21.333	22.011	0					15	12	2	0	0	0	0.59184	1	7573	7573		11.64	6.4096	1	36027000	+		24837	13153	15813	15899	23889	23889					-0.09439027621499463
PPFNIIGN	8	Unmodified	_PPFNIIGN_					0	0	0			REV__TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	REV__TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	436.23797607421875	2	436.237253	870.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2311	1	4.967	4.467	5.467	-0.26414								0	0	0	0.8837	1	1600	1600		0.79363	0	1		+		24838	12826	15814	15900	23890	23890					0.019541306972769235
PPGARDVEAQ	10	Unmodified	_PPGARDVEAQ_					0	0	0		ENSG00000101197|ENST00000217169|BIRC7	ENSG00000101197|ENST00000217169|BIRC7	ENSG00000101197|ENST00000217169|BIRC7	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.7698974609375	2	520.261988	1038.50942	0.34285	0.00017837	-0.1868	-9.7187E-05	0.15605	8.1184E-05	520.2618916888126	16.936	0.31236	16.594	16.412	16.725	-0.34183					10	5	3	0	0	0	0.2916	1	5719	5719		12.241	0	1	14244000			24839	1763	15815	15901	23891	23891					-0.00829206084586076
PPGGLHAP	8	Unmodified	_PPGGLHAP_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MSMS	HCT116MG_D190212_S1	1	373.20294189453125	2	373.203213	744.391873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.393	1	18.393	17.893	18.893	0								0	0	0	0.86899	1	6319	6319		17.087	5.9721	1				24840	5970	15816	15902	23892	23892					0.009453058372741907
PPGKPSSRK	9	Unmodified	_PPGKPSSRK_					0	0	0			REV__ENSG00000106477|ENST00000223208|CEP41	REV__ENSG00000106477|ENST00000223208|CEP41	MSMS	HCT116MG_D190212_S4	4	477.2806701660156	2	477.279983	952.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.852	1	41.476	40.976	41.976	-0.37637								0	0	0	0.76913	1	15360	15360		3.9444	1.6417	1		+		24841	11299	15817	15903	23893	23893					0.06724295882952447
PPGNCGEV	8	Unmodified	_PPGNCGEV_					0	0	0		nc|ENSG00000112186|P40123-3|CAP2;nc|ENSG00000112186|P40123-2|CAP2;ENSG00000112186|ENST00000229922|CAP2	nc|ENSG00000112186|P40123-3|CAP2	nc|ENSG00000112186|P40123-3|CAP2	MULTI-MSMS	HCT116MG_D190212_S2	2	386.66827392578125	2	386.668346	771.322139	0.015857	6.1312E-06	-0.054172	-2.0946E-05	-0.038315	-1.4815E-05	386.668330182721	20.799	0.26065	20.42	20.289	20.55	-0.37949					6	4	2	0	0	0	0.77285	1	7314	7314		14.582	4.3983	1	13448000			24842	2332	15818	15904	23894	23894					-0.0726694089363491
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;KMT2B|p.P1201Rfs*154|1|0.37|ENSG00000272333|chr19:35725288-35725288|C/-|frameshift_variant;KMT2B|p.G1199Afs*156|1|0.16|ENSG00000272333|chr19:35725283-35725283|G/-|frameshift_variant;KMT2B|p.D1589Gfs*89|1|0.28|ENSG00000272333|chr19:35729058-35729059|-/G|frameshift_variant;KMT2B|p.P1821Hfs*74|1|0.36|ENSG00000272333|chr19:35731927-35731927|C/-|frameshift_variant;KMT2B|p.G1879Vfs*16|5|0.4|ENSG00000272333|chr19:35732101-35732101|G/-|frameshift_variant;KMT2B|p.R1911Dfs*23|1|0.18|ENSG00000272333|chr19:35732274-35732274|C/-|frameshift_variant;KMT2B|p.L2136Pfs*17|1|0.27|ENSG00000272333|chr19:35732956-35732956|T/-|frameshift_variant;KMT2B|p.G2123Vfs*30|1|0.34|ENSG00000272333|chr19:35732913-35732913|G/-|frameshift_variant;KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant	KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	404.2324523925781	2	404.232836	806.45112	0.13847	5.5974E-05	0.15718	6.3536E-05	0.29565	0.00011951	404.23286082678163	46.54	1.4932	46.429	45.957	47.45	-0.11122					73	28	7	0	0	0	0.86564	1	17666	17666		2.5775	0	1	748990000			24843	6666	15819	15905	23895	23895					0.040152018514731935
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant;KMT2B|p.P1201Rfs*154|1|0.37|ENSG00000272333|chr19:35725288-35725288|C/-|frameshift_variant;KMT2B|p.G1199Afs*156|1|0.16|ENSG00000272333|chr19:35725283-35725283|G/-|frameshift_variant;KMT2B|p.D1589Gfs*89|1|0.28|ENSG00000272333|chr19:35729058-35729059|-/G|frameshift_variant;KMT2B|p.P1821Hfs*74|1|0.36|ENSG00000272333|chr19:35731927-35731927|C/-|frameshift_variant;KMT2B|p.G1879Vfs*16|5|0.4|ENSG00000272333|chr19:35732101-35732101|G/-|frameshift_variant;KMT2B|p.R1911Dfs*23|1|0.18|ENSG00000272333|chr19:35732274-35732274|C/-|frameshift_variant;KMT2B|p.L2136Pfs*17|1|0.27|ENSG00000272333|chr19:35732956-35732956|T/-|frameshift_variant;KMT2B|p.G2123Vfs*30|1|0.34|ENSG00000272333|chr19:35732913-35732913|G/-|frameshift_variant;KMT2B|p.A2538Pfs*76|1|0.42|ENSG00000272333|chr19:35737693-35737693|G/-|frameshift_variant;ENSG00000272333|ENST00000420124|KMT2B	KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant	KMT2B|p.R1055Gfs*127|1|0.46|ENSG00000272333|chr19:35723827-35723827|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	404.232836	806.45112	0.068115	2.7534E-05	0.52046	0.00021039	0.58857	0.00023792	404.2329588359518	46.105	1.4546	46.105	45.555	47.01	0	-0.16213	0.00014124	NaN	2.5775	58	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2749100000			24844	6666	15819	15905							0.040152018514731935
PPGSPGDP	8	Unmodified	_PPGSPGDP_					0	0	0			REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	723.3307495117188	1	723.330795	722.323519	0.77663	0.00056176	-0.15523	-0.00011229	0.62139	0.00044947	723.330668584249	28.825	0.57092	28.484	28.211	28.782	-0.34059					17	10	2	0	0	0	0.55794	1	10376	10376		36.044	1.9418	1	4185300	+		24845	10249	15820	15906	23896	23896					-0.048749835332273506
PPGSPGDP	8	Unmodified	_PPGSPGDP_					0	0	0			REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	723.330795	722.323519	0.71517	0.0005173	0.30928	0.00022371	1.0244	0.00074102	723.3308867760156	28.941	0.36452	28.719	28.473	28.838	-0.22196	0.11768	0.00021725	NaN	36.044	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4250600	+		24846	10249	15820	15906							-0.048749835332273506
PPGSPGDP	8	Unmodified	_PPGSPGDP_					0	0	0			REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	723.330795	722.323519	0.77663	0.00056176	-0.15523	-0.00011229	0.62139	0.00044947	723.330668584249	28.825	0.57092	28.484	28.211	28.782	-0.34059	-0.11768	-0.00011875	NaN	36.044	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4185300	+		24847	10249	15820	15906							-0.048749835332273506
PPGTPRRQP	9	Unmodified	_PPGTPRRQP_					0	0	0		GRAP2|p.T192Dfs*47|1|0.16|ENSG00000100351|chr22:39968148-39968149|-/C|frameshift_variant	GRAP2|p.T192Dfs*47|1|0.16|ENSG00000100351|chr22:39968148-39968149|-/C|frameshift_variant	GRAP2|p.T192Dfs*47|1|0.16|ENSG00000100351|chr22:39968148-39968149|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	503.2809753417969	2	503.283057	1004.55156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.694	1	29.345	28.845	29.845	-0.34921								0	0	0	0.76694	1	10734	10734		11.64	0	1				24848	9195	15821	15907	23897	23897					0.049468141144643596
PPGVIRRSMM	10	Unmodified	_PPGVIRRSMM_					0	0	0		SPPL2B|p.G128Vfs*32|2|0.31|ENSG00000005206|chr19:2338760-2338760|G/-|frameshift_variant	SPPL2B|p.G128Vfs*32|2|0.31|ENSG00000005206|chr19:2338760-2338760|G/-|frameshift_variant	SPPL2B|p.G128Vfs*32|2|0.31|ENSG00000005206|chr19:2338760-2338760|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	381.875	3	381.875694	1142.60525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9457	1	6.9457	6.4457	7.4457	0								0	0	0	0.97045	1	2098	2098		0.15932	0.15932	1				24849	18232	15822	15908	23898	23898					0.03965527230320731
PPKIIVKFPRT	11	Unmodified	_PPKIIVKFPRT_					0	0	0			REV__sp|Q6SW29|VIE2_HCMVMViraltranscriptionfactorIE2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL122PE=3SV=1	REV__sp|Q6SW29|VIE2_HCMVMViraltranscriptionfactorIE2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL122PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	648.4158935546875	2	648.41354	1294.81253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.277	1	58.277	57.777	58.777	0								0	0	0	0.9598	1	22445	22445		1.1933	0.66858	1		+		24850	17578	15823	15909	23899	23899					0.17691381041640852
PPKILMPEQI	10	Unmodified	_PPKILMPEQI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	389.2283630371094	3	389.226499	1164.65767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.421	1	37.037	36.537	37.537	-0.3839								0	0	0	0.96453	1	13732	13732		0.62683	0	1				24851	4258;9506	15824	15910	23900	23900					0.08192388844918241
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENSG00000142661|ENST00000374434|MYOM3	nc|ENSG00000142661|Q5VTT5-2|MYOM3	nc|ENSG00000142661|Q5VTT5-2|MYOM3	MULTI-MSMS	HCT116MG_D190212_S3	3	824.48486328125	1	824.484945	823.477669	0.91764	0.00075658	0.14763	0.00012172	1.0653	0.0008783	824.4848919477374	47.034	1.2357	46.72	46.125	47.361	-0.31405					58	24	4	0	0	0	0.87635	1	17543	17543		0.69038	0	1	131500000			24852	3770	15825	15911	23901	23901					0.05886890742817741
PPLAGGPK	8	Unmodified	_PPLAGGPK_					0	0	0			REV__ENST00000502256.1_1_4:2743986-2746461:-|nuORF	REV__ENST00000502256.1_1_4:2743986-2746461:-|nuORF	MSMS	HCT116MG_D190212_S4	4	368.7201232910156	2	368.721239	735.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.24	1	45.868	45.368	46.368	-0.37206								0	0	0	0.8837	1	17071	17071		0.79363	0	1		+		24853	16115	15826	15912	23902	23902					0.049627630141344525
PPLAMFVFCPL	11	Unmodified	_PPLAMFVFCPL_					0	0	0			REV__ENST00000609776.1_1_2:222437513-222437723:+|nuORF	REV__ENST00000609776.1_1_2:222437513-222437723:+|nuORF	MSMS	HCT116MG_D190212_S4	4	412.2178955078125	3	412.216946	1233.62901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.021	1	36.636	36.136	37.136	-0.38486								0	0	0	0.95925	1	13570	13570		0.50596	0.051438	1		+		24854	16791	15827	15913	23903	23903					0.021539479441344156
PPLCHAAL	8	Unmodified	_PPLCHAAL_					0	0	0			REV__SUPT6H|p.M1711Cfs*51|1|0.29|ENSG00000109111|chr17:28701570-28701570|C/-|frameshift_variant	REV__SUPT6H|p.M1711Cfs*51|1|0.29|ENSG00000109111|chr17:28701570-28701570|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	411.2221374511719	2	411.220549	820.426544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.423	1	48.056	47.556	48.556	-0.36728								0	0	0	0.8837	1	17934	17934		2.8892	0	1		+		24855	17603	15828	15914	23904	23904					0.009148056537242155
PPLEATKLEFD	11	Unmodified	_PPLEATKLEFD_					0	0	0			REV__ENST00000374308.1_1_9:114355204-114361641:-|nuORF	REV__ENST00000374308.1_1_9:114355204-114361641:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	630.329833984375	2	630.329536	1258.64452	0.47585	0.00029995	-0.5929	-0.00037372	-0.11704	-7.3774E-05	630.3289643049633	50.679	0.46429	50.679	50.368	50.833	0					13	8	2	0	0	0	0.73696	1	19348	19348		8.1555	1.0538	1	11115000	+		24856	11313	15829	15915	23905	23905					0.025542292665249988
PPLGPSGMS	9	Unmodified	_PPLGPSGMS_					0	0	0			REV__RXRB|p.P176Lfs*4|1|0.65|ENSG00000204231|chr6:33198421-33198421|G/-|frameshift_variant	REV__RXRB|p.P176Lfs*4|1|0.65|ENSG00000204231|chr6:33198421-33198421|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	421.70721435546875	2	421.707471	841.400389	0.10343	4.3619E-05	0.24469	0.00010319	0.34812	0.00014681	421.70732707898617	23.708	0.26032	23.325	23.195	23.456	-0.38324					6	4	2	0	0	0	0.49914	1	8497	8497		16.942	1.0951	1	8312700	+		24857	14186	15830	15916	23906	23906					-0.026655083084051512
PPLLVLTL	8	Unmodified	_PPLLVLTL_					0	0	0		nc|ENSG00000211657|A0A0A0MS00|IGLV3-32	nc|ENSG00000211657|A0A0A0MS00|IGLV3-32	nc|ENSG00000211657|A0A0A0MS00|IGLV3-32	MSMS	HCT116MG_D190212_S1	1	433.2904052734375	2	433.291497	864.568441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.827	1	58.827	58.327	59.327	0								0	0	0	0.8837	1	22672	22672		0.69038	0	1				24858	9618	15831	15917	23907	23907					0.13073921947693634
PPLLVLTL	8	Unmodified	_PPLLVLTL_					0	0	0		nc|ENSG00000211657|A0A0A0MS00|IGLV3-32	nc|ENSG00000211657|A0A0A0MS00|IGLV3-32	nc|ENSG00000211657|A0A0A0MS00|IGLV3-32	MSMS	HCT116MG_D190212_S3	3	433.2906188964844	2	433.291497	864.568441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.254	1	57.984	57.484	58.484	-0.26932								0	0	0	0.8837	1	22156	22156		0.69038	0	1				24859	9618	15831	15917	23908	23908					0.13073921947693634
PPLPLHRG	8	Unmodified	_PPLPLHRG_					0	0	0			REV__ENST00000355803.8_1_16:1374828-1375008:+|nuORF	REV__ENST00000355803.8_1_16:1374828-1375008:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	886.5253295898438	1	886.525747	885.518471	1.0368	0.00091913	-0.47289	-0.00041923	0.56389	0.0004999	886.525082365645	60.439	3.2085	60.187	58.164	61.373	-0.25233					100	61	2	0	0	0	0.8672	1	23110	23110		2.3027	0	1	11717000	+		24860	15041	15832	15918	23909	23909					0.07113232062420138
PPLTGPPSSLP	11	Unmodified	_PPLTGPPSSLP_					0	0	0			REV__ENST00000489952.5_1_11:64559674-64566943:-|nuORF	REV__ENST00000489952.5_1_11:64559674-64566943:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	531.7951049804688	2	531.795132	1061.57571	0.5956	0.00031674	-0.41887	-0.00022276	0.17672	9.398E-05	531.7949278599651	56.19	0.47939	55.884	55.668	56.148	-0.30626					11	8	2	0	0	0	0.73364	1	21073	21073		9.3831	0.63772	1	1517200	+		24861	13184	15833	15919	23910	23910					0.04738609757487211
PPLVQLLLLLL	11	Unmodified	_PPLVQLLLLLL_					0	0	0			REV__nc|ENSG00000088881|Q9BQW3-1|EBF4	REV__nc|ENSG00000088881|Q9BQW3-1|EBF4	MSMS	HCT116MG_D190212_S2	2	411.285400390625	3	411.284454	1230.83153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.045	1	61.909	61.409	62.409	-0.13585								0	0	0	0.96208	1	24042	24042		0	0	1		+		24862	17086	15834	15920	23911	23911					0.22534917612733807
PPMKRRRGRRK	11	Unmodified	_PPMKRRRGRRK_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	479.9649963378906	3	479.965117	1436.87352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.139	1	11.139	10.639	11.639	0								0	0	0	0.96208	1	3479	3479		0	0	1				24863	430	15835	15921	23912	23912					0.17256007592800415
PPMVHDGP	8	Unmodified	_PPMVHDGP_					0	0	0			REV__nc|ENSG00000187098|O75030-10|MITF	REV__nc|ENSG00000187098|O75030-10|MITF	MSMS	HCT116MG_D190212_S4	4	425.2021484375	2	425.199813	848.385073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.082	1	30.715	30.215	31.215	-0.36698								0	0	0	0.8837	1	11266	11266		2.8892	0	1		+		24864	13913	15836	15922	23913	23913					-0.04518375105601535
PPNDGAPQASP	11	Unmodified	_PPNDGAPQASP_					0	0	0			REV__MRRF-TTLL11|2|fusion	REV__MRRF-TTLL11|2|fusion	MULTI-MSMS	HCT116MG_D190212_S4	4	525.74609375	2	525.74617	1049.47779	0.44774	0.0002354	-0.15361	-8.0762E-05	0.29412	0.00015463	525.7460940246865	27.103	0.7272	26.792	26.483	27.21	-0.3114					22	13	2	0	0	0	0.61097	1	9668	9668		34.222	6.5929	1	2930700	+		24865	13529	15837	15923	23914	23914					-0.04497198838521399
PPPDSMTM	8	Unmodified	_PPPDSMTM_					0	0	0			REV__SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant	REV__SCN4A|p.E974Rfs*5|1|0.4|ENSG00000007314|chr17:63949462-63949463|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	438.18731689453125	2	438.185514	874.356475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.101	1	36.101	35.601	36.601	0								0	0	0	0.8837	1	13450	13450		5.2307	0	1		+		24866	10494	15838	15924	23915	23915					-0.08572860797050907
PPPGKAAT	8	Unmodified	_PPPGKAAT_					0	0	0		COBL|p.A302Nfs*28|1|0.06|ENSG00000106078|chr7:51136211-51136212|-/AAGTATT|frameshift_variant;nc|ENSG00000106078|O75128-5|COBL;nc|ENSG00000106078|O75128-4|COBL;COBL|p.Q983Rfs*82|1|0.44|ENSG00000106078|chr7:51028148-51028148|T/-|frameshift_variant;COBL|p.E953Rfs*112|1|0.24|ENSG00000106078|chr7:51028239-51028239|C/-|frameshift_variant;COBL|p.K1094Nfs*20|1|0.24|ENSG00000106078|chr7:51027814-51027814|T/-|frameshift_variant;nc|ENSG00000106078|O75128-3|COBL;COBL|p.R1238Gfs*4|1|0.12|ENSG00000106078|chr7:51025165-51025165|T/-|frameshift_variant;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL	COBL|p.A302Nfs*28|1|0.06|ENSG00000106078|chr7:51136211-51136212|-/AAGTATT|frameshift_variant	COBL|p.A302Nfs*28|1|0.06|ENSG00000106078|chr7:51136211-51136212|-/AAGTATT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	369.7091064453125	2	369.710871	737.407189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.373	1	41.997	41.497	42.497	-0.37565								0	0	0	0.8837	1	15571	15571		0.79363	0	1				24867	508	15839	15925	23916	23916					0.027981726344478375
PPPGPYSS	8	Unmodified	_PPPGPYSS_					0	0	0			REV__nc|ENSG00000166265|Q96J86|CYYR1	REV__nc|ENSG00000166265|Q96J86|CYYR1	MULTI-MSMS	HCT116MG_D190212_S1	1	401.1921691894531	2	401.192511	800.370469	-0.13069	-5.2432E-05	0.40192	0.00016125	0.27123	0.00010882	401.1923985411555	44.879	0.31002	44.879	44.673	44.983	0					7	5	2	0	0	0	0.84759	1	17018	17018		5.7604	3.1829	1	11583000	+		24868	17197	15840	15926	23917	23917					-0.03770123982087625
PPPGPYSS	8	Unmodified	_PPPGPYSS_					0	0	0			REV__nc|ENSG00000166265|Q96J86|CYYR1	REV__nc|ENSG00000166265|Q96J86|CYYR1	MULTI-SECPEP	HCT116MG_D190212_S1	1	401.72369384765625	2	401.192511	800.370469	-0.13069	-5.2432E-05	0.40192	0.00016125	0.27123	0.00010882	401.1923985411555	44.879	0.31002	44.879	44.673	44.983	0					7	5	2	0	0	0	0.33021	1	16978	16978		5.7604	2.8712	1	11583000	+		24869	17197	15840	15926	23918	23918					-0.03770123982087625
PPPIPAYG	8	Unmodified	_PPPIPAYG_					0	0	0		RBFOX1|p.T351Pfs*7|1|0.34|ENSG00000078328|chr16:7709106-7709106|C/-|frameshift_variant;nc|ENSG00000078328|Q9NWB1-3|RBFOX1;nc|ENSG00000078328|Q9NWB1-4|RBFOX1;nc|ENSG00000078328|Q9NWB1-5|RBFOX1;ENSG00000078328|ENST00000550418|RBFOX1;nc|ENSG00000078328|Q9NWB1-2|RBFOX1	RBFOX1|p.T351Pfs*7|1|0.34|ENSG00000078328|chr16:7709106-7709106|C/-|frameshift_variant	RBFOX1|p.T351Pfs*7|1|0.34|ENSG00000078328|chr16:7709106-7709106|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	406.2200622558594	2	406.221072	810.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.249	1	46.879	46.379	47.379	-0.37038								0	0	0	0.8837	1	17471	17471		2.8892	0.31174	1				24870	1364	15841	15927	23919	23919					0.014793432942724394
PPPLLLLLLLL	11	Unmodified	_PPPLLLLLLLL_					0	0	0		CELSR2-KIAA1324|1|fusion;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.P2879Lfs*14|1|0.28|ENSG00000143126|chr1:109273557-109273557|C/-|frameshift_variant;CELSR2|p.V2215Wfs*26|2|0.42|ENSG00000143126|chr1:109269115-109269115|C/-|frameshift_variant;CELSR2|p.G1044Vfs*17|1|0.42|ENSG00000143126|chr1:109253206-109253206|G/-|frameshift_variant;PLBD1|p.N214Tfs*4|1|0.06|ENSG00000121316|chr12:14536628-14536628|T/-|frameshift_variant;ENSG00000121316|ENST00000240617|PLBD1	CELSR2-KIAA1324|1|fusion;ENSG00000121316|ENST00000240617|PLBD1;REV__nc|ENSG00000087116|O95450-2|ADAMTS2	CELSR2-KIAA1324|1|fusion	MSMS	HCT116MG_D190212_S1	1	607.9291381835938	2	607.927961	1213.84137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.193	1	11.193	10.693	11.693	0								0	0	0	0.96208	1	3501	3501		0	0	1				24871	397;17084;2729	15842	15928	23920	23920					0.24300105618112866
PPPLPAAT	8	Unmodified	_PPPLPAAT_					0	0	0		ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant;ZNF469|p.I1874Yfs*24|1|0.39|ENSG00000225614|chr16:88433167-88433167|C/-|frameshift_variant;ZNF469|p.Q2396Kfs*49|1|0.23|ENSG00000225614|chr16:88434735-88434735|C/-|frameshift_variant;ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant;ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant;ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant;ZNF469|p.R3818Gfs*95|1|0.46|ENSG00000225614|chr16:88439000-88439000|C/-|frameshift_variant;ENSG00000225614|ENST00000565624|ZNF469;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	382.2197570800781	2	382.221072	762.42759	-0.067513	-2.5805E-05	-1.2886	-0.00049253	-1.3561	-0.00051834	382.21971380325266	45.609	0.62648	45.609	45.244	45.87	0					27	11	3	0	0	0	0.87576	1	17330	17330		0.79363	0	1	7625300			24872	18729;18730	15843	15929	23921	23921					0.036873432942570616
PPPLPAAT	8	Unmodified	_PPPLPAAT_					0	0	0		ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant;ZNF469|p.I1874Yfs*24|1|0.39|ENSG00000225614|chr16:88433167-88433167|C/-|frameshift_variant;ZNF469|p.Q2396Kfs*49|1|0.23|ENSG00000225614|chr16:88434735-88434735|C/-|frameshift_variant;ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant;ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant;ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant;ZNF469|p.R3818Gfs*95|1|0.46|ENSG00000225614|chr16:88439000-88439000|C/-|frameshift_variant;ENSG00000225614|ENST00000565624|ZNF469;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	382.221072	762.42759	0.031501	1.2041E-05	-3.7137	-0.0014195	-3.6822	-0.0014074	382.21959736871656	45.641	2.2829	45.33	44.679	46.962	-0.31094	-0.081864	-3.5829E-05	NaN	0.79363	80	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195500000			24873	18729;18730	15843	15929							0.036873432942570616
PPPLPAAT	8	Unmodified	_PPPLPAAT_					0	0	0		ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant;ZNF469|p.I1874Yfs*24|1|0.39|ENSG00000225614|chr16:88433167-88433167|C/-|frameshift_variant;ZNF469|p.Q2396Kfs*49|1|0.23|ENSG00000225614|chr16:88434735-88434735|C/-|frameshift_variant;ZNF469|p.D3286Tfs*124|1|0.31|ENSG00000225614|chr16:88437405-88437405|C/-|frameshift_variant;ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant;ZNF469|p.A3754Rfs*17|1|0.31|ENSG00000225614|chr16:88438809-88438810|-/C|frameshift_variant;ZNF469|p.R3818Gfs*95|1|0.46|ENSG00000225614|chr16:88439000-88439000|C/-|frameshift_variant;ENSG00000225614|ENST00000565624|ZNF469;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant;ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	382.221072	762.42759	0.10452	3.9949E-05	-3.6656	-0.0014011	-3.5611	-0.0013611	382.2195791379748	45.669	1.6288	45.297	44.646	46.275	-0.37266	-0.11549	9.2393E-07	NaN	0.79363	85	52	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210740000			24874	18729;18730	15843	15929							0.036873432942570616
PPPLWRLVVH	10	Unmodified	_PPPLWRLVVH_					0	0	0			REV__nc|ENSG00000187266|P19235-2|EPOR	REV__nc|ENSG00000187266|P19235-2|EPOR	MSMS	HCT116MG_D190212_S4	4	405.2457580566406	3	405.244992	1212.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.862	1	47.493	46.993	47.993	-0.36907								0	0	0	0.96911	1	17707	17707		0.15932	0	1		+		24875	13920	15844	15930	23922	23922					0.1152998314753404
PPPLWRLVVH	10	Unmodified	_PPPLWRLVVH_					0	0	0			REV__nc|ENSG00000187266|P19235-2|EPOR	REV__nc|ENSG00000187266|P19235-2|EPOR	MSMS	HCT116MG_D190212_S4	4	405.245849609375	3	405.244992	1212.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.437	1	48.07	47.57	48.57	-0.36728								0	0	0	0.96911	1	17939	17939		0.15932	0.01943	1		+		24876	13920	15844	15930	23923	23923					0.1152998314753404
PPPLWRLVVH	10	Unmodified	_PPPLWRLVVH_					0	0	0			REV__nc|ENSG00000187266|P19235-2|EPOR	REV__nc|ENSG00000187266|P19235-2|EPOR	MSMS	HCT116MG_D190212_S4	4	405.2457580566406	3	405.244992	1212.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.554	1	49.192	48.692	49.692	-0.36213								0	0	0	0.96911	1	18385	18385		0.15932	0.01943	1		+		24877	13920	15844	15930	23924	23924					0.1152998314753404
PPPPCSPM	8	Unmodified	_PPPPCSPM_					0	0	0		ENST00000590278.1_1_19:33696051-33698478:+|nuORF;ENSG00000130881|ENST00000253193|LRP3	ENST00000590278.1_1_19:33696051-33698478:+|nuORF	ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MSMS	HCT116MG_D190212_S2	2	413.1858825683594	2	413.185317	824.356081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.257	1	58.086	57.586	58.586	-0.1703								0	0	0	0.8837	1	22510	22510		2.5775	0	1				24878	3112	15845	15931	23925	23925					-0.06312235726250037
PPPPPPHLPAF	11	Unmodified	_PPPPPPHLPAF_					0	0	0			REV__nc|ENSG00000172216|P17676-2|CEBPB	REV__nc|ENSG00000172216|P17676-2|CEBPB	MULTI-SECPEP	HCT116MG_D190212_S1	1	583.2352905273438	2	583.821484	1165.62842	0.34969	0.00020416	2.394	0.0013976	2.7437	0.0016018	583.8230952706505	32.248	0.15586	32.248	32.118	32.274	0					4	2	2	0	0	0	0.36296	1	11888	11888		10.824	4.6181	1	2542600	+		24879	13379	15846	15932	23926	23926					0.05222612610918986
PPPPPPLFMSS	11	Unmodified	_PPPPPPLFMSS_					0	0	0			REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	583.797607421875	2	583.79936	1165.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.616	1	53.316	52.816	53.816	-0.30009								0	0	0	0.90571	1	20297	20297		19.257	2.3147	1		+		24880	12909	15847	15933	23927	23927					0.00799840402441987
PPPPPPVVPE	10	Unmodified	_PPPPPPVVPE_					0	0	0		ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant;ENSG00000197483|ENST00000598519|ZNF628	ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant	ZNF628|p.Q661Sfs*63|1|0.35|ENSG00000197483|chr19:55483170-55483170|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	514.2606811523438	2	513.286943	1024.55933	0.28596	0.00014678	0.10355	5.3151E-05	0.38951	0.00019993	513.2868743839414	53.588	0.67675	53.253	52.983	53.66	-0.33473					33	12	4	0	0	0	0.75427	1	19985	19985		15.847	3.3156	1	18293000			24881	6151	15848	15934	23928	23928					0.04803528591378381
PPPPSEPG	8	Unmodified	_PPPPSEPG_					0	0	0		ENST00000590966.1_1_17:68165378-68165540:-|nuORF	ENST00000590966.1_1_17:68165378-68165540:-|nuORF	ENST00000590966.1_1_17:68165378-68165540:-|nuORF	MSMS	HCT116MG_D190212_S4	4	389.1934509277344	2	389.192511	776.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.332	1	46.961	46.461	47.461	-0.37038								0	0	0	0.8837	1	17505	17505		2.5775	0	1				24882	9031	15849	15935	23929	23929					-0.0266612398208963
PPPRTTAR	8	Unmodified	_PPPRTTAR_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	HCT116MG_D190212_S4	4	448.2592468261719	2	448.259051	894.503549	0.14994	6.7211E-05	-0.17829	-7.9922E-05	-0.028358	-1.2712E-05	448.2588145486018	49.351	1.4349	48.989	48.615	50.05	-0.36217					56	30	4	0	0	0	0.86858	1	18230	18230		2.0598	0	1	114190000			24883	1158	15850	15936	23930	23930					0.052077401944075064
PPPTVVTY	8	Unmodified	_PPPTVVTY_					0	0	0			REV__OR10Z1|p.L284Pfs*3|1|0.42|ENSG00000198967|chr1:158607282-158607283|-/C|frameshift_variant	REV__OR10Z1|p.L284Pfs*3|1|0.42|ENSG00000198967|chr1:158607282-158607283|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	437.2381591796875	2	437.239461	872.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.269	1	47.269	46.769	47.769	0								0	0	0	0.8837	1	17956	17956		9.3474	5.0182	1		+		24884	17364	15851	15937	23931	23931					0.023035951201904936
PPQRRRLARRR	11	Unmodified	_PPQRRRLARRR_					0	0	0		ENST00000393606.7_1_17:42294008-42297052:-|nuORF	ENST00000393606.7_1_17:42294008-42297052:-|nuORF	ENST00000393606.7_1_17:42294008-42297052:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	487.974853515625	3	487.974781	1460.90251	0.31503	0.00015373	0.02842	1.3868E-05	0.34345	0.00016759	487.97473368527636	56.654	0.6321	56.472	56.156	56.788	-0.18261					36	11	5	0	0	0	0.74191	1	21855	21855		0.45452	0.37117	1	129290000			24885	7625	15852	15938	23932	23932					0.19049868213437549
PPRAAPAA	8	Unmodified	_PPRAAPAA_					0	0	0		ENST00000317025.12_1_8:38239359-38239452:-|nuORF	ENST00000317025.12_1_8:38239359-38239452:-|nuORF	ENST00000317025.12_1_8:38239359-38239452:-|nuORF	MSMS	HCT116MG_D190212_S2	2	375.7160339355469	2	375.716488	749.418422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.297	1	52.109	51.609	52.609	-0.18725								0	0	0	0.8837	1	20086	20086		2.8892	0	1				24886	7087	15853	15939	23933	23933					0.03368994728600683
PPRFLPLLLR	10	Unmodified	_PPRFLPLLLR_					0	0	0		ENSG00000142530|ENST00000600100|GARIN5A;nc|ENSG00000142530|Q6IPT2-2|GARIN5A	ENSG00000142530|ENST00000600100|GARIN5A	ENSG00000142530|ENST00000600100|GARIN5A	MSMS	HCT116MG_D190212_S1	1	407.9328918457031	3	407.932526	1220.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2344	1	3.2344	2.7344	3.7344	0								0	0	0	0.97045	1	973	973		0.15932	0	1				24887	3760	15854	15940	23934	23934					0.17419129215750218
PPRKKHPV	8	Unmodified	_PPRKKHPV_					0	0	0			REV__MYRF|p.K745Rfs*45|1|0.07|ENSG00000124920|chr11:61779550-61779550|C/-|frameshift_variant	REV__MYRF|p.K745Rfs*45|1|0.07|ENSG00000124920|chr11:61779550-61779550|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	479.8025207519531	2	479.800886	957.587219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.505	1	56.198	55.698	56.698	-0.30626								0	0	0	0.8837	1	21183	21183		2.3027	1.5091	1		+		24888	11801	15855	15941	23935	23935					0.10672896362132178
PPRKWFGEQPQ	11	Unmodified	_PPRKWFGEQPQ_					0	0	0			REV__ENST00000494144.5_1_10:86177532-86230140:+|nuORF	REV__ENST00000494144.5_1_10:86177532-86230140:+|nuORF	MSMS	HCT116MG_D190212_S4	4	685.2034912109375	2	685.354211	1368.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.926	1	18.74	18.24	19.24	-0.18674								0	0	0	0.95273	1	6386	6386		4.897	0	1		+		24889	11324	15856	15942	23936	23936					0.024269820660038022
PPRLGKIF	8	Unmodified	_PPRLGKIF_					0	0	0		ADAM21|p.E402K|1|0.14|ENSG00000139985|chr14:70458703-70458703|G/A|missense_variant	ADAM21|p.E402K|1|0.14|ENSG00000139985|chr14:70458703-70458703|G/A|missense_variant	ADAM21|p.E402K|1|0.14|ENSG00000139985|chr14:70458703-70458703|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	464.37335205078125	2	464.292362	926.570172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.168	1	55.862	55.362	56.362	-0.30626								0	0	0	0.8837	1	21049	21049		0.6015	0	1				24890	37	15857	15943	23937	23937					0.10394975756310032
PPRQQAIEI	9	Unmodified	_PPRQQAIEI_					0	0	0			REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MSMS	HCT116MG_D190212_S4	4	351.2011413574219	3	351.201341	1050.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.436	1	39.055	38.555	39.555	-0.38055								0	0	0	0.76948	1	14489	14489		2.7352	0	1		+		24891	14301	15858	15944	23938	23938					0.05892547708845086
PPRTLPLH	8	Unmodified	_PPRTLPLH_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;USP54|p.R831Tfs*6|1|0.07|ENSG00000166348|chr10:73519973-73519983|CAGGGCAAGTC/-|frameshift_variant;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MSMS	HCT116MG_D190212_S4	4	465.7777099609375	2	465.779619	929.544686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.591	1	46.219	45.719	46.719	-0.37134								0	0	0	0.8837	1	17205	17205		2.3027	0	1				24892	4843	15859	15945	23939	23939					0.07709501233898663
PPSFNQGLPQ	10	Unmodified	_PPSFNQGLPQ_					0	0	0			REV__ENSG00000163348|ENST00000368457|PYGO2	REV__ENSG00000163348|ENST00000368457|PYGO2	MSMS	HCT116MG_D190212_S1	1	542.7733154296875	2	542.774731	1083.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.388	1	23.388	22.888	23.888	0								0	0	0	0.85631	1	8327	8327		21.537	2.28	1		+		24893	12915	15860	15946	23940	23940					-0.003517315621365924
PPSLPLLLSLL	11	Unmodified	_PPSLPLLLSLL_					0	0	0			REV__AFF2|p.K978Rfs*65|1|0.46|ENSG00000155966|chrX:148966804-148966804|A/-|frameshift_variant	REV__AFF2|p.K978Rfs*65|1|0.46|ENSG00000155966|chrX:148966804-148966804|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	388.25408935546875	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.86	1	54.564	54.064	55.064	-0.29587								0	0	0	0.9619	1	20797	20797		0.094841	0	1		+		24894	9877	15861	15947	23941	23941					0.1628977879058766
PPSRSPRV	8	Unmodified	_PPSRSPRV_					0	0	0		PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant;ENSG00000139200|ENST00000534837|PIANP;nc|ENSG00000139200|Q8IYJ0|PIANP	PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant	PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	447.7646179199219	2	448.259051	894.503549	-0.022096	-9.9046E-06	-0.8423	-0.00037757	-0.86439	-0.00038747	448.2585575978973	48.788	0.51711	48.788	48.666	49.183	0					11	9	2	0	0	0	0.32797	1	18580	18580		7.9102	0	1	6222100			24895	3610	15862	15948	23942	23942					0.05207740194430244
PPSRSPRV	8	Unmodified	_PPSRSPRV_					0	0	0		PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant;ENSG00000139200|ENST00000534837|PIANP;nc|ENSG00000139200|Q8IYJ0|PIANP	PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant	PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	448.259051	894.503549	0.21742	9.7461E-05	0.10899	4.8856E-05	0.32641	0.00014632	448.2589812362623	48.811	0.75887	48.668	48.439	49.198	-0.1437	-0.205	6.6078E-05	NaN	7.9102	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342740000			24896	3610	15862	15948							0.05207740194430244
PPSRSPRV	8	Unmodified	_PPSRSPRV_					0	0	0		PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant;ENSG00000139200|ENST00000534837|PIANP;nc|ENSG00000139200|Q8IYJ0|PIANP	PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant	PIANP|p.H136Sfs*16|1|0.12|ENSG00000139200|chr12:6697405-6697406|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	448.259051	894.503549	0.033947	1.5217E-05	0.18549	8.3148E-05	0.21944	9.8365E-05	448.2589616684742	49.362	0.78775	49.046	48.657	49.445	-0.31596	0.17357	0.00013466	NaN	7.9102	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42745000			24897	3610	15862	15948							0.05207740194430244
PPSRYSPPP	9	Unmodified	_PPSRYSPPP_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	HCT116MG_D190212_S4	4	499.2593078613281	2	499.258717	996.50288	0.37786	0.00018865	-0.17746	-8.8597E-05	0.2004	0.00010005	499.25857034117604	30.731	0.98841	30.367	30.249	31.238	-0.36416					31	21	2	0	0	0	0.22203	1	11370	11370		12.532	12.532	1	5485800	+		24898	13076	15863	15949	23943	23943					0.0044890075471357704
PPSSQRLPPP	10	Unmodified	_PPSSQRLPPP_					0	0	0		ENSG00000170807|ENST00000458573|LMOD2	ENSG00000170807|ENST00000458573|LMOD2	ENSG00000170807|ENST00000458573|LMOD2	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2982788085938	2	538.298373	1074.58219	0.43704	0.00023526	0.06195	3.3348E-05	0.49899	0.00026861	538.2982771952309	15.476	2.1329	15.561	14.936	17.069	0.085424					93	40	4	0	0	0	0.53455	2	5440	4906;5440		32.786	0	1	11126000			24899	5157	15864	15950	23944;23945	23945					0.047885477088584594
PPSVPAPSDYP	11	Unmodified	_PPSVPAPSDYP_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MSMS	HCT116MG_D190212_S2	2	376.1865539550781	3	376.185356	1125.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.939	1	22.554	22.054	23.054	-0.3852								0	0	0	0.94924	1	8151	8151		3.0723	0.22898	1				24900	2766	15865	15951	23946	23946					-0.02350571001852586
PPTGGAAG	8	Unmodified	_PPTGGAAG_					0	0	0			REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	627.3099365234375	1	627.309666	626.30239	0.44059	0.00027638	0.17281	0.0001084	0.61339	0.00038479	627.309654576259	17.771	0.83569	17.414	17.284	18.12	-0.35647					21	15	2	0	0	0	0.40466	1	6120	6120		49.669	11.518	1	5519800	+		24901	13516	15866	15952	23947	23947					-0.02570948842094367
PPTGGAAG	8	Unmodified	_PPTGGAAG_					0	0	0			REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	627.31005859375	1	627.309666	626.30239	0.14915	9.3562E-05	0.33135	0.00020786	0.48049	0.00030142	627.309797706524	17.443	0.83257	17.524	17.221	18.054	0.081358					25	15	2	0	0	0	0.40466	1	5836	5836		49.669	11.518	1	4458500	+		24902	13516	15866	15952	23948	23948					-0.02570948842094367
PPTGGAAG	8	Unmodified	_PPTGGAAG_					0	0	0			REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	REV__MCTP1|p.N668Kfs*5|1|0.21|ENSG00000175471|chr5:94873171-94873172|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	627.309666	626.30239	0.44059	0.00027638	0.17281	0.0001084	0.61339	0.00038479	627.309654576259	17.771	0.83569	17.414	17.284	18.12	-0.35647	-0.054994	-6.7573E-05	NaN	49.669	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5519800	+		24903	13516	15866	15952							-0.02570948842094367
PPTLILAL	8	Unmodified	_PPTLILAL_					0	0	0		ENST00000279036.11_3_20:44054315-44054561:+|nuORF	ENST00000279036.11_3_20:44054315-44054561:+|nuORF	ENST00000279036.11_3_20:44054315-44054561:+|nuORF	MSMS	HCT116MG_D190212_S3	3	419.2750549316406	2	419.275847	836.537141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.337	1	59.074	58.574	59.574	-0.26296								0	0	0	0.8837	1	22593	22593		0.79363	0	1				24904	6937	15867	15953	23949	23949					0.1123334891359491
PPTPPPQEGP	10	Unmodified	_PPTPPPQEGP_					0	0	0		ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	MSMS	HCT116MG_D190212_S3	3	508.8011779785156	2	508.756007	1015.49746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.293	1	50.981	50.481	51.481	-0.31166								0	0	0	0.94107	1	19364	19364		6.7232	1.4263	1				24905	5612	15868	15954	23950	23950					-0.00966822827751912
PPTRPPSGP	9	Unmodified	_PPTRPPSGP_					0	0	0			REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF	REV__ENST00000512231.5_1_11:67066841-67069800:+|nuORF	MSMS	HCT116MG_D190212_S3	3	453.244384765625	2	453.245609	904.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.22	1	24.158	23.658	24.658	-0.061449								0	0	0	0.71969	1	8590	8590		18.135	1.1927	1		+		24906	16191	15869	15955	23951	23951					0.020606315832424116
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	482.29931640625	3	482.299265	1443.87596	0.20745	0.00010005	0.0042821	2.0653E-06	0.21173	0.00010212	482.299116825677	56.145	0.31006	56.145	56.015	56.326	0					12	5	4	0	0	0	0.74191	1	21581	21581		1.3296	0	1	149650000	+		24907	9857	15870	15956	23952	23952					0.1717817932210437
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	482.2994079589844	3	482.299265	1443.87596	0.27831	0.00013423	0.27677	0.00013349	0.55509	0.00026772	482.29925821179614	56.652	0.63219	56.469	56.259	56.892	-0.18261					27	11	4	0	0	0	0.74191	1	21859	21859		4.4062	3.0765	1	78486000	+		24908	9857	15870	15956	23953	23953					0.1717817932210437
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	482.299265	1443.87596	0.20745	0.00010005	0.0042821	2.0653E-06	0.21173	0.00010212	482.299116825677	56.145	0.31006	56.145	56.015	56.326	0	-0.16199	-0.0003285	NaN	1.3296	12	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149650000	+		24909	9857	15870	15956							0.1717817932210437
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	REV__ADAMTS17|p.R1041Afs*5|1|0.5|ENSG00000140470|chr15:99976051-99976051|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	482.299265	1443.87596	0.27831	0.00013423	0.27677	0.00013349	0.55509	0.00026772	482.29925821179614	56.652	0.63219	56.469	56.259	56.892	-0.18261	0.16199	6.5765E-05	NaN	1.3296	27	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78486000	+		24910	9857	15870	15956							0.1717817932210437
PPVMGPKML	9	Unmodified	_PPVMGPKML_					0	0	0			REV__ENST00000578655.1_1_17:9846551-9939756:-|nuORF	REV__ENST00000578655.1_1_17:9846551-9939756:-|nuORF	MSMS	HCT116MG_D190212_S1	1	485.2667236328125	2	485.266642	968.51873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.584	1	48.584	48.084	49.084	0								0	0	0	0.76781	1	18491	18491		8.5933	0	1		+		24911	16613	15871	15957	23954	23954					0.03321147675762859
PPVSLALL	8	Unmodified	_PPVSLALL_					0	0	0		ENST00000333646.10_2_X:70338483-70339224:+|nuORF	ENST00000333646.10_2_X:70338483-70339224:+|nuORF	ENST00000333646.10_2_X:70338483-70339224:+|nuORF	MSMS	HCT116MG_D190212_S1	1	405.25927734375	2	405.260197	808.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.339	1	39.339	38.839	39.839	0								0	0	0	0.8837	1	14754	14754		2.8892	0	1				24912	7179	15872	15958	23955	23955					0.09392775879518922
PPWNNQRVH	9	Unmodified	_PPWNNQRVH_					0	0	0			REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	383.7320556640625	3	383.196701	1146.56827	-0.014002	-5.3655E-06	-0.4646	-0.00017803	-0.4786	-0.0001834	383.1963846177204	25.009	0.15603	24.633	24.556	24.712	-0.37521					4	2	2	0	0	0	0.26413	1	8993	8993		4.897	4.897	1	4546800	+		24913	12298	15873	15959	23956	23956					0.0008531500041044637
PPWRRWRPWFR	11	Unmodified	_PPWRRWRPWFR_					0	0	0		ENST00000532024.1_1_11:70118214-70118385:+|nuORF	ENST00000532024.1_1_11:70118214-70118385:+|nuORF	ENST00000532024.1_1_11:70118214-70118385:+|nuORF	MSMS	HCT116MG_D190212_S1	1	820.44970703125	2	820.447103	1638.87965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.914	1	46.914	46.414	47.414	0								0	0	0	0.96149	1	17812	17812		0.30703	0.30703	1				24914	8629	15874	15960	23957	23957					0.08576849095948091
PQAAGRTQP	9	Unmodified	_PQAAGRTQP_					0	0	0			REV__ENST00000268607.9_1_16:87425503-87425911:+|nuORF	REV__ENST00000268607.9_1_16:87425503-87425911:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	463.7259521484375	2	463.246141	924.477728	-0.1457	-6.7497E-05	0.29472	0.00013653	0.14902	6.9031E-05	463.2462321028587	18.012	0.26003	17.837	17.688	17.948	-0.17501					7	4	2	0	0	0	0.21227	1	5964	5964		15.847	5.0233	1	3173300	+		24915	14687	15875	15961	23958	23958					0.01246845952118747
PQALPPETIHL	11	Unmodified	_PQALPPETIHL_					0	0	0		ENST00000465232.5_1_10:124742792-124745823:+|nuORF;ENST00000483755.5_1_10:124742467-124749713:+|nuORF;ENST00000493461.1_1_10:124742263-124743062:+|nuORF;nc|ENSG00000179988|Q8IV42-2|PSTK;nc|ENSG00000179988|Q8IV42|PSTK;ENSG00000179988|ENST00000406217|PSTK	ENST00000465232.5_1_10:124742792-124745823:+|nuORF	ENST00000465232.5_1_10:124742792-124745823:+|nuORF	MSMS	HCT116MG_D190212_S1	1	608.3761596679688	2	608.340238	1214.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.898	1	22.898	22.398	23.398	0								0	0	0	0.91433	1	8129	8129		18.146	0	1				24916	5578	15876	15962	23959	23959					0.06717659085916239
PQATRPPPAPL	11	Unmodified	_PQATRPPPAPL_					0	0	0			REV__ENSG00000273604|ENST00000621654|EPOP	REV__ENSG00000273604|ENST00000621654|EPOP	MULTI-MSMS	HCT116MG_D190212_S4	4	572.8280029296875	2	572.827298	1143.64004	0.71249	0.00040813	-0.12387	-7.0956E-05	0.58862	0.00033718	572.8270698086209	24.607	0.31103	24.338	24.134	24.445	-0.26881					8	5	2	0	0	0	0.70153	1	8694	8694		26.021	0	1	2253100	+		24917	14446	15877	15963	23960	23960					0.0739680963426963
PQCGPGHWCR	10	Unmodified	_PQCGPGHWCR_					0	0	0		ENST00000393218.6_1_14:93199069-93214951:-|nuORF;ENST00000553371.1_2_14:93199069-93214962:-|nuORF	ENST00000393218.6_1_14:93199069-93214951:-|nuORF	ENST00000393218.6_1_14:93199069-93214951:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	570.7007446289062	2	570.744928	1139.4753	0.61546	0.00035127	-1.4489	-0.00082692	-0.83339	-0.00047565	570.7439410707002	20.741	0.62349	20.531	20.136	20.76	-0.20959					17	11	2	0	0	0	0.31042	1	6970	6970		3.2813	1.6287	1	2590100			24918	7622	15878	15964	23961	23961					-0.08885649048852429
PQCHGCCC	8	Unmodified	_PQCHGCCC_					0	0	0			REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	850.2466430664062	1	850.246296	849.23902	0.95922	0.00081557	-0.53257	-0.00045282	0.42665	0.00036276	850.2457132830615	29.19	0.20907	29.19	29.06	29.269	0					5	3	2	0	0	0	0.87635	1	10687	10687		0.69038	0.088878	1	3709400	+		24919	10394	15879	15965	23962	23962					-0.19163040209161863
PQCHGCCC	8	Unmodified	_PQCHGCCC_					0	0	0			REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	850.2471313476562	1	850.246296	849.23902	0.62384	0.00053042	-0.26022	-0.00022125	0.36362	0.00030917	850.2458476769822	32.406	0.5728	32.176	31.995	32.567	-0.23009					16	10	2	0	0	0	0.87635	1	12113	12113		0.69038	0.69038	1	31570000	+		24920	10394	15879	15965	23963	23963					-0.19163040209161863
PQCHGCCC	8	Unmodified	_PQCHGCCC_					0	0	0			REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	850.246296	849.23902	0.59402	0.00050506	-0.24772	-0.00021062	0.3463	0.00029444	850.2459928276998	32.196	0.67762	32.196	31.961	32.639	0	-0.064344	8.5189E-05	NaN	0.69038	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65814000	+		24921	10394	15879	15965							-0.19163040209161863
PQCHGCCC	8	Unmodified	_PQCHGCCC_					0	0	0			REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	850.246296	849.23902	0.62384	0.00053042	-0.26022	-0.00022125	0.36362	0.00030917	850.2458476769822	32.406	0.5728	32.176	31.995	32.567	-0.23009	-0.084052	7.4563E-05	NaN	0.69038	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31570000	+		24922	10394	15879	15965							-0.19163040209161863
PQCHGCCC	8	Unmodified	_PQCHGCCC_					0	0	0			REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	REV__DNAJC5B|p.R141Q|1|0.31|ENSG00000147570|chr8:66080465-66080465|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	850.246296	849.23902	0.68929	0.00058607	-0.30087	-0.00025581	0.38843	0.00033026	850.2459644315433	32.614	0.72056	32.234	31.897	32.618	-0.37924	-0.025658	4.0003E-05	NaN	0.69038	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29473000	+		24923	10394	15879	15965							-0.19163040209161863
PQDHSKGW	8	Unmodified	_PQDHSKGW_					0	0	0		TTC31|p.P501H|1|0.45|ENSG00000115282|chr2:74493160-74493160|C/A|missense_variant	TTC31|p.P501H|1|0.45|ENSG00000115282|chr2:74493160-74493160|C/A|missense_variant	TTC31|p.P501H|1|0.45|ENSG00000115282|chr2:74493160-74493160|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	477.7260437011719	2	477.725041	953.435529	0.47594	0.00022737	-0.22534	-0.00010765	0.2506	0.00011972	477.72498377798104	21.122	0.93452	20.912	20.448	21.383	-0.20959					27	17	3	0	0	0	0.69106	1	7289	7289		24.021	7.0783	1	4055100			24924	18673	15880	15966	23964	23964					-0.043051294562360454
PQDPNPQVPQQ	11	Unmodified	_PQDPNPQVPQQ_					0	0	0		RAB42|p.V82Cfs*38|1|0.18|ENSG00000188060|chr1:28594034-28594035|-/G|frameshift_variant	RAB42|p.V82Cfs*38|1|0.18|ENSG00000188060|chr1:28594034-28594035|-/G|frameshift_variant	RAB42|p.V82Cfs*38|1|0.18|ENSG00000188060|chr1:28594034-28594035|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	624.303955078125	2	624.304384	1246.59421	0.23663	0.00014773	-0.24389	-0.00015226	-0.0072616	-4.5335E-06	624.3040130190662	18.608	0.51872	18.428	18.097	18.615	-0.18052					14	9	2	0	0	0	0.73156	1	6292	6292		10.151	2.2404	1	1401900			24925	9795	15881	15967	23965	23965					-0.019218803386365835
PQDSSPGPA	9	Unmodified	_PQDSSPGPA_					0	0	0		nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	MSMS	HCT116MG_D190212_S4	4	428.56817626953125	2	428.195782	854.377011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.293	1	18.113	17.613	18.613	-0.1795								0	0	0	0.56943	1	6130	6130		25.399	1.3787	1				24926	9678	15882	15968	23966	23966					-0.05600230821369223
PQDYEFIYRQQ	11	Unmodified	_PQDYEFIYRQQ_					0	0	0			REV__TENM1|p.R1899Q|1|0.2|ENSG00000009694|chrX:124386036-124386036|C/T|missense_variant	REV__TENM1|p.R1899Q|1|0.2|ENSG00000009694|chrX:124386036-124386036|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	743.8504028320312	2	743.851698	1485.68884	0.44114	0.00032814	-2.7497	-0.0020454	-2.3086	-0.0017172	743.8502033762196	23.253	0.31272	23.213	23.083	23.396	-0.03968					7	5	2	0	0	0	0.73844	1	8219	8219		7.609	0.50723	1	3552200	+		24927	17625	15883	15969	23967	23967					-0.03457366587281285
PQEEAPEV	8	Unmodified	_PQEEAPEV_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	MULTI-MSMS	HCT116MG_D190212_S2	2	898.4143676757812	1	898.415253	897.407977	0.83073	0.00074634	-0.24803	-0.00022283	0.5827	0.0005235	898.4148382154057	29.976	0.46456	29.691	29.46	29.924	-0.28494					23	8	4	0	0	0	0.15825	1	10971	10971		81.89	0.27713	1	243480000			24928	2326	15884	15970	23968	23968					-0.04483077507143207
PQEEAPEV	8	Unmodified	_PQEEAPEV_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	MULTI-MSMS	HCT116MG_D190212_S2	2	449.71148681640625	2	449.711265	897.407977	-0.058826	-2.6454E-05	0.18047	8.1161E-05	0.12165	5.4707E-05	449.7112982859657	29.981	0.51624	29.697	29.46	29.976	-0.28453					19	9	4	0	0	0	0.1772	1	10988	10988		78.149	7.0158	1	114770000			24929	2326	15884	15970	23969	23969					-0.04483077507143207
PQEEAPEV	8	Unmodified	_PQEEAPEV_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	MULTI-MSMS	HCT116MG_D190212_S4	4	898.4161376953125	1	898.415253	897.407977	0.64743	0.00058166	0.10804	9.7068E-05	0.75547	0.00067873	898.4152296381583	30.137	0.45817	29.78	29.545	30.003	-0.35711					20	8	4	0	0	0	0.11121	1	10895	10895		92.491	7.1347	1	68407000			24930	2326	15884	15970	23970	23970					-0.04483077507143207
PQEEAPEV	8	Unmodified	_PQEEAPEV_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	MULTI-MATCH	HCT116MG_D190212_S1	1		1	898.415253	897.407977	0.75561	0.00067885	-0.41252	-0.00037061	0.34309	0.00030824	898.4145933401965	29.624	0.3641	29.624	29.425	29.789	0	-0.098667	-0.00017121	NaN	92.491	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19378000			24931	2326	15884	15970							-0.04483077507143207
PQEEAPEV	8	Unmodified	_PQEEAPEV_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	898.415253	897.407977	1.0524	0.00094551	-0.31702	-0.00028481	0.7354	0.00066069	898.414834860803	30.031	0.56945	29.795	29.555	30.124	-0.23655	0.07252	-8.5417E-05	NaN	92.491	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174450000			24932	2326	15884	15970							-0.04483077507143207
PQEESILMVP	10	Unmodified	_PQEESILMVP_					0	0	0			REV__ENSG00000155099|ENST00000285419|PIP4P2	REV__ENSG00000155099|ENST00000285419|PIP4P2	MSMS	HCT116MG_D190212_S1	1	572.1178588867188	2	571.791732	1141.56891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.767	1	31.767	31.267	32.267	0								0	0	0	0.91906	1	11700	11700		11.64	0.81637	1		+		24933	12693	15885	15971	23971	23971					0.003789288145981118
PQEFRRWRDTG	11	Unmodified	_PQEFRRWRDTG_					0	0	0		DNAAF3|p.R326Afs*82|1|0.35|ENSG00000167646|chr19:55160713-55160713|C/-|frameshift_variant;nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3;nc|ENSG00000167646|Q8N9W5-3|DNAAF3	DNAAF3|p.R326Afs*82|1|0.35|ENSG00000167646|chr19:55160713-55160713|C/-|frameshift_variant	DNAAF3|p.R326Afs*82|1|0.35|ENSG00000167646|chr19:55160713-55160713|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	724.3621215820312	2	724.363099	1446.71164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.232	1	48.867	48.367	49.367	-0.365								0	0	0	0.95686	1	18254	18254		2.7352	1.4057	1				24934	697	15886	15972	23972	23972					0.006156973208362615
PQENAVFKN	9	Unmodified	_PQENAVFKN_					0	0	0		ENST00000260356.5_1_15:39887667-39888120:+|nuORF	ENST00000260356.5_1_15:39887667-39888120:+|nuORF	ENST00000260356.5_1_15:39887667-39888120:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	523.76611328125	2	523.766906	1045.51926	0.4475	0.00023438	-0.83852	-0.00043919	-0.39102	-0.00020481	523.7661339122272	37.944	0.28854	37.643	37.545	37.833	-0.30137					14	10	2	0	0	0	0.67781	1	14040	14040		6.7232	0.99131	1	15966000			24935	6839	15887	15973	23973	23973					-0.0016801807919364364
PQEPPAVELD	10	Unmodified	_PQEPPAVELD_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	365.5181579589844	3	365.516995	1093.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.185	1	25.895	25.395	26.395	-0.29022								0	0	0	0.92607	1	9316	9316		5.7834	0.38072	1				24936	4258;9506	15888	15974	23974	23974					-0.013868748644881634
PQEPVSVPQ	9	Unmodified	_PQEPVSVPQ_					0	0	0		nc|ENSG00000164087|Q8NBT0-3|POC1A;ENSG00000164087|ENST00000296484|POC1A	nc|ENSG00000164087|Q8NBT0-3|POC1A	nc|ENSG00000164087|Q8NBT0-3|POC1A	MULTI-MSMS	HCT116MG_D190212_S3	3	491.2425537109375	2	490.756007	979.497461	0.087599	4.299E-05	0.89626	0.00043984	0.98386	0.00048283	490.7560717352195	19.925	0.5731	19.973	19.478	20.051	0.048107					16	10	2	0	0	0	0.43775	1	6877	6877		20.454	2.3186	1	3392100			24937	4667	15889	15975	23975	23975					0.006891771722393969
PQEQHHFYW	9	Unmodified	_PQEQHHFYW_					0	0	0			REV__ENST00000462193.2_1_7:99720491-99722508:+|nuORF	REV__ENST00000462193.2_1_7:99720491-99722508:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	636.7844848632812	2	636.283254	1270.55196	0.64682	0.00041156	-1.3559	-0.00086271	-0.70903	-0.00045115	636.7836087874891	29.554	0.26093	29.318	29.187	29.448	-0.23655					5	4	2	0	0	0	0.25347	1	10779	10779		14.838	6.0929	1	4065800	+		24938	13132	15890	15976	23976	23976					-0.07249810956341207
PQETGERLNKY	11	Unmodified	_PQETGERLNKY_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;JMJD1C|p.A2114Cfs*5|1|0.04|ENSG00000171988|chr10:63189399-63189400|-/T|frameshift_variant;JMJD1C|p.I2113Kfs*18|1|0.04|ENSG00000171988|chr10:63189400-63189401|-/TT|frameshift_variant;JMJD1C|p.A1206Efs*30|1|0.07|ENSG00000171988|chr10:63208052-63208053|-/GTAAAGTT|frameshift_variant;nc|ENSG00000171988|Q15652-2|JMJD1C	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MULTI-MSMS	HCT116MG_D190212_S4	4	667.8392944335938	2	667.838591	1333.66263	0.57164	0.00038176	0.020987	1.4016E-05	0.59263	0.00039578	667.8385360795974	31.67	0.93488	31.3	30.816	31.751	-0.37026					29	17	2	0	0	0	0.73981	1	11617	11617		7.1017	0.89594	1	7247800			24939	30	15891	15977	23977	23977					0.009143642412254849
PQETPQHVTLQ	11	Unmodified	_PQETPQHVTLQ_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	HCT116MG_D190212_S3	3	639.3283081054688	2	639.327859	1276.64116	0.48003	0.0003069	0.036685	2.3454E-05	0.51672	0.00033035	639.3278774756066	31.711	1.1991	31.44	30.595	31.794	-0.27028					60	22	4	0	0	0	0.71419	1	11689	11689		16.566	5.742	1	37752000	+		24940	14117	15892	15978	23978	23978					0.013909792125332388
PQEVLGPAP	9	Unmodified	_PQEVLGPAP_					0	0	0			REV__nc|ENSG00000213638|Q96EY9|ADAT3	REV__nc|ENSG00000213638|Q96EY9|ADAT3	MSMS	HCT116MG_D190212_S4	4	454.2475891113281	2	454.247818	906.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.589	1	42.214	41.714	42.714	-0.37565								0	0	0	0.67173	1	15659	15659		20.454	3.5113	1		+		24941	14257	15893	15979	23979	23979					0.024100960061332444
PQFIKLKKK	9	Unmodified	_PQFIKLKKK_					0	0	0			REV__DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	REV__DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	377.2545471191406	3	377.253376	1128.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.919	1	20.953	20.453	21.453	0.034473								0	0	0	0.76995	1	7262	7262		1.0715	0.29493	1		+		24942	10365	15894	15980	23980	23980					0.17908037950110156
PQGDPAEFKPQ	11	Unmodified	_PQGDPAEFKPQ_					0	0	0			REV__ENSG00000185823|ENST00000329468|NPAP1	REV__ENSG00000185823|ENST00000329468|NPAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	607.297119140625	2	607.296027	1212.5775	0.9135	0.00055477	-0.71325	-0.00043315	0.20026	0.00012161	607.7965511812463	31.939	0.51911	31.564	31.226	31.745	-0.37529					14	9	2	0	0	0	0.7298	1	11606	11606		10.8	0.72558	1	3643700	+		24943	13859	15895	15981	23981	23981					-0.020283812245679655
PQGDPAEFKPQ	11	Unmodified	_PQGDPAEFKPQ_					0	0	0			REV__ENSG00000185823|ENST00000329468|NPAP1	REV__ENSG00000185823|ENST00000329468|NPAP1	MULTI-SECPEP	HCT116MG_D190212_S4	4	607.2105712890625	2	607.296027	1212.5775	0.9135	0.00055477	-0.71325	-0.00043315	0.20026	0.00012161	607.7965511812463	31.939	0.51911	31.564	31.226	31.745	-0.37529					14	9	2	0	0	0	0.36272	1	11650	11650		4.897	0	1	3643700	+		24944	13859	15895	15981	23982	23982					-0.020283812245679655
PQGDPAEFKPQ	11	Unmodified	_PQGDPAEFKPQ_					0	0	0			REV__ENSG00000185823|ENST00000329468|NPAP1	REV__ENSG00000185823|ENST00000329468|NPAP1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	607.296027	1212.5775	0.44124	0.00026796	0.16885	0.00010254	0.61008	0.0003705	607.2963027245434	31.726	0.26033	31.456	31.378	31.638	-0.27028	-0.053963	0.00045141	NaN	10.8	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2945300	+		24945	13859	15895	15981							-0.020283812245679655
PQGGNQPQG	9	Unmodified	_PQGGNQPQG_					0	0	0		nc|ENSG00000251655|P04280|PRB1;ENSG00000121335|ENST00000389362|PRB2	nc|ENSG00000251655|P04280|PRB1	nc|ENSG00000251655|P04280|PRB1	MULTI-MSMS	HCT116MG_D190212_S3	3	882.4075317382812	1	882.40642	881.399144	0.67574	0.00059627	-0.4697	-0.00041446	0.20604	0.00018181	882.4068064016589	16.457	0.31203	16.542	16.393	16.705	0.085424					9	5	2	0	0	0	0.21251	1	5479	5479		39.957	1.9833	1	1267500			24946	2730	15896	15982	23983	23983					-0.04630006352942928
PQGGNQPQG	9	Unmodified	_PQGGNQPQG_					0	0	0		nc|ENSG00000251655|P04280|PRB1;ENSG00000121335|ENST00000389362|PRB2	nc|ENSG00000251655|P04280|PRB1	nc|ENSG00000251655|P04280|PRB1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	882.40642	881.399144	0.84613	0.00074663	-0.70608	-0.00062305	0.14005	0.00012358	882.405941523615	17.005	0.25995	16.656	16.509	16.769	-0.34933	0.056693	-2.115E-05	NaN	39.957	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1894000			24947	2730	15896	15982							-0.04630006352942928
PQGIRVQPPL	10	Unmodified	_PQGIRVQPPL_					0	0	0		nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	MSMS	HCT116MG_D190212_S4	4	552.8309936523438	2	552.82984	1103.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.783	1	46.411	45.911	46.911	-0.37134								0	0	0	0.95351	1	17282	17282		3.9444	0.3479	1				24948	9414	15897	15983	23984	23984					0.09745113496887825
PQGNSRQVV	9	Unmodified	_PQGNSRQVV_					0	0	0		nc|ENSG00000080815|P49768-4|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	nc|ENSG00000080815|P49768-4|PSEN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	492.7044982910156	2	492.764697	983.514842	0.30252	0.00014907	-0.001837	-9.0518E-07	0.30068	0.00014816	492.7646159605926	17.522	0.15662	17.173	17.082	17.239	-0.34933					4	2	2	0	0	0	0.21838	1	5936	5936		20.454	3.5113	1	1738400			24949	9386	15898	15984	23985	23985					0.02242517497904828
PQGPSGAPGPQ	11	Unmodified	_PQGPSGAPGPQ_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MULTI-SECPEP	HCT116MG_D190212_S3	3	497.2718811035156	2	496.743431	991.472308	0.27537	0.00013679	0.061987	3.0792E-05	0.33736	0.00016758	496.74342837413343	23.113	0.76937	23.073	22.73	23.5	-0.03968					20	14	2	0	0	0	0.33458	1	8270	8270		24.991	3.454	1	4203800			24950	3613	15899	15985	23986	23986					-0.023768776303313643
PQGPSGAPGPQ	11	Unmodified	_PQGPSGAPGPQ_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;COL2A1|p.P917Lfs*111|2|0.33|ENSG00000139219|chr12:47978742-47978742|G/-|frameshift_variant;COL2A1|p.P1046Lfs*84|1|0.13|ENSG00000139219|chr12:47977628-47977628|G/-|frameshift_variant	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MULTI-MSMS	HCT116MG_D190212_S4	4	496.74371337890625	2	496.743431	991.472308	0.25553	0.00012694	0.11367	5.6463E-05	0.3692	0.0001834	496.7434815597659	23.232	0.73058	22.985	22.645	23.376	-0.24775					20	13	2	0	0	0	0.37659	1	8130	8130		57.108	9.3589	1	4307800			24951	3613	15899	15985	23987	23987					-0.023768776303313643
PQGPYNVEGAQ	11	Unmodified	_PQGPYNVEGAQ_					0	0	0			REV__ENST00000367558.5_1_1:182568137-182568245:-|nuORF	REV__ENST00000367558.5_1_1:182568137-182568245:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	580.2728881835938	2	580.272552	1158.53055	0.19726	0.00011446	0.37474	0.00021745	0.572	0.00033192	580.2727258977832	30.742	0.51073	30.378	30.21	30.72	-0.36416					27	14	2	0	0	0	0.64269	1	11125	11125		30.703	5.7125	1	9155700	+		24952	15124	15900	15986	23988	23988					-0.04237240775705686
PQGSPGPLGPQ	11	Unmodified	_PQGSPGPLGPQ_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7667236328125	2	517.766906	1033.51926	0.26774	0.00013863	-0.23627	-0.00012233	0.03147	1.6294E-05	517.7666911832162	17.51	0.83588	17.161	16.821	17.657	-0.34933					22	15	2	0	0	0	0.53802	1	5981	5981		42.312	7.3804	1	4317800	+		24953	12072	15901	15987	23989	23989					0.0038398192079966975
PQGSPGPLGPQ	11	Unmodified	_PQGSPGPLGPQ_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	HCT116MG_D190212_S3	3	517.7667846679688	2	517.766906	1033.51926	0.12267	6.3512E-05	0.2383	0.00012338	0.36096	0.0001869	517.7668144487272	16.709	1.9248	16.793	15.976	17.901	0.084467					57	36	3	0	0	0	0.4398	1	5667	5667		51.488	0.072748	1	6322000	+		24954	12072	15901	15987	23990	23990					0.0038398192079966975
PQGSPGPLGPQ	11	Unmodified	_PQGSPGPLGPQ_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MULTI-SECPEP	HCT116MG_D190212_S3	3	518.2463989257812	2	517.766906	1033.51926	0.12267	6.3512E-05	0.2383	0.00012338	0.36096	0.0001869	517.7668144487272	16.709	1.9248	16.793	15.976	17.901	0.084467					57	36	3	0	0	0	0.15795	1	5645	5645		59.052	11.32	1	6322000	+		24955	12072	15901	15987	23991	23991					0.0038398192079966975
PQGSPGPLGPQ	11	Unmodified	_PQGSPGPLGPQ_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	HCT116MG_D190212_S4	4	518.268310546875	2	517.766906	1033.51926	-0.20063	-0.00010388	0.33423	0.00017306	0.13361	6.9177E-05	517.7670251355413	16.989	1.0199	16.822	16.261	17.281	-0.16664					35	19	2	0	0	0	0.64269	1	5454	5454		30.703	9.1665	1	4802100	+		24956	12072	15901	15987	23992	23992					0.0038398192079966975
PQGVEGPPGPS	11	Unmodified	_PQGVEGPPGPS_					0	0	0		COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant;COL4A5|p.F1520Vfs*34|1|0.04|ENSG00000188153|chrX:108692794-108692795|-/GTAATAAATATACTATA|frameshift_variant;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000483338.1_1_X:107826116-107869594:+|nuORF	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	511.2514953613281	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.331	1	25.051	24.551	25.551	-0.27958								0	0	0	0.90489	1	8971	8971		19.362	2.4196	1				24957	525	15902	15988	23993	23993					-0.021800108331376578
PQHPHPVSPL	10	Unmodified	_PQHPHPVSPL_					0	0	0		ENST00000603542.5_1_20:10200008-10200131:-|nuORF	ENST00000603542.5_1_20:10200008-10200131:-|nuORF	ENST00000603542.5_1_20:10200008-10200131:-|nuORF	MSMS	HCT116MG_D190212_S1	1	554.79443359375	2	554.79854	1107.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.176	1	56.176	55.676	56.676	0								0	0	0	0.90892	1	21590	21590		13.906	0.86358	1				24958	9104	15903	15989	23994	23994					0.03303967428701071
PQHQDQPSPEV	11	Unmodified	_PQHQDQPSPEV_					0	0	0			REV__ENSG00000159337|ENST00000290472|PLA2G4D	REV__ENSG00000159337|ENST00000290472|PLA2G4D	MSMS	HCT116MG_D190212_S1	1	631.2935180664062	2	631.294016	1260.57348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.001	1	24.001	23.501	24.501	0								0	0	0	0.92235	1	8573	8573		17.113	0	1		+		24959	12801	15904	15990	23995	23995					-0.046384707182596685
PQIKDLPQPQ	10	Unmodified	_PQIKDLPQPQ_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MSMS	HCT116MG_D190212_S4	4	582.3250122070312	2	582.324588	1162.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.48	1	26.18	25.68	26.68	-0.30087								0	0	0	0.90291	1	9435	9435		15.248	0.41021	1				24960	6460	15905	15991	23996	23996					0.05981086051792772
PQKLTTKKL	9	Unmodified	_PQKLTTKKL_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MSMS	HCT116MG_D190212_S1	1	352.8974609375	3	352.89737	1055.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.93	1	11.93	11.43	12.43	0								0	0	0	0.77018	1	3797	3797		0.26902	0	1				24961	2324	15906	15992	23997	23997					0.14467168299461264
PQKLTTKKL	9	Unmodified	_PQKLTTKKL_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MSMS	HCT116MG_D190212_S1	1	352.8973388671875	3	352.89737	1055.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.033	1	14.033	13.533	14.533	0								0	0	0	0.77018	1	4573	4573		0.26902	0	1				24962	2324	15906	15992	23998	23998					0.14467168299461264
PQKSILERKEV	11	Unmodified	_PQKSILERKEV_					0	0	0		ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	MSMS	HCT116MG_D190212_S1	1	663.8467407226562	2	663.890626	1325.7667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.666	1	23.666	23.166	24.166	0								0	0	0	0.94851	1	8438	8438		7.1017	0.47135	1				24963	4528	15907	15993	23999	23999					0.11684691068762731
PQKYYWWFFQT	11	Unmodified	_PQKYYWWFFQT_					0	0	0		ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENSG00000137857|ENST00000389037|DUOX1	ENST00000561220.6_1_15:45434150-45457096:+|nuORF	ENST00000561220.6_1_15:45434150-45457096:+|nuORF	MSMS	HCT116MG_D190212_S2	2	797.3783569335938	2	797.379894	1592.74524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.296	1	16.947	16.447	17.447	-0.34933								0	0	0	0.96003	1	5878	5878		1.0715	0.72083	1				24964	3511	15908	15994	24000	24000					-0.027426939599990874
PQLERKRTREL	11	Unmodified	_PQLERKRTREL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MSMS	HCT116MG_D190212_S4	4	713.419677734375	2	713.417874	1424.82119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.833	1	27.512	27.012	28.012	-0.32157								0	0	0	0.94012	1	9982	9982		11.495	6.1978	1				24965	1937	15909	15995	24001	24001					0.1257770294016609
PQLKWQRRRQ	10	Unmodified	_PQLKWQRRRQ_					0	0	0			REV__NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant	REV__NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	698.6339111328125	2	698.407644	1394.80073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.987	1	32.702	32.202	33.202	-0.28511								0	0	0	0.95648	1	12110	12110		3.2813	0.28607	1		+		24966	17348	15910	15996	24002	24002					0.11912577071007036
PQLLDLPLLV	10	Unmodified	_PQLLDLPLLV_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MSMS	HCT116MG_D190212_S2	2	374.2384033203125	3	374.237392	1119.69035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.434	1	25.065	24.565	25.565	-0.36914								0	0	0	0.96804	1	9158	9158		0.69767	0.23933	1				24967	3412	15911	15997	24003	24003					0.13528919239411152
PQLLQSLRK	9	Unmodified	_PQLLQSLRK_					0	0	0		ENST00000512214.1_1_4:164506888-164533886:-|nuORF;ENSG00000145416|ENST00000514618|MARCHF1	ENST00000512214.1_1_4:164506888-164533886:-|nuORF	ENST00000512214.1_1_4:164506888-164533886:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1082.6689453125	1	1082.66805	1081.66078	0.53122	0.00057513	-0.1793	-0.00019412	0.35192	0.00038101	1082.6678114500005	60.62	0.30827	60.62	60.491	60.799	0					9	5	2	0	0	0	0.75193	1	23373	23373		1.6526	0.17072	1	49123000			24968	3909	15912	15998	24004	24004					0.12321400013956918
PQLLRMHVRPL	11	Unmodified	_PQLLRMHVRPL_					0	0	0		nc|ENSG00000196811|P07510-2|CHRNG;ENSG00000196811|ENST00000651502|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	MSMS	HCT116MG_D190212_S4	4	680.406982421875	2	680.405724	1358.79689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.309	1	39.93	39.43	40.43	-0.37828								0	0	0	0.95954	1	14783	14783		1.3295	0	1				24969	6101	15913	15999	24005	24005					0.131847712529634
PQLPGDRGVYE	11	Unmodified	_PQLPGDRGVYE_					0	0	0		ENST00000465378.5_1_22:46731956-46733721:+|nuORF	ENST00000465378.5_1_22:46731956-46733721:+|nuORF	ENST00000465378.5_1_22:46731956-46733721:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	615.8092651367188	2	615.809302	1229.60405	0.54	0.00033254	-0.36314	-0.00022363	0.17686	0.00010891	615.8090297513702	31.835	0.46719	31.46	31.278	31.745	-0.37529					14	8	2	0	0	0	0.69464	1	11583	11583		23.79	15.044	1	4145500			24970	8088	15914	16000	24006	24006					-0.0015669233323478693
PQLTLVSLRYL	11	Unmodified	_PQLTLVSLRYL_					0	0	0			REV__nc|ENSG00000165633|Q8IW00-2|VSTM4	REV__nc|ENSG00000165633|Q8IW00-2|VSTM4	MSMS	HCT116MG_D190212_S4	4	651.8933715820312	2	651.892638	1301.77072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.843	1	54.524	54.024	55.024	-0.31901								0	0	0	0.95731	1	20518	20518		2.4985	1.0166	1		+		24971	13068	15915	16001	24007	24007					0.13190780562467808
PQLYFVDMRQ	10	Unmodified	_PQLYFVDMRQ_					0	0	0			REV__ENSG00000121741|ENST00000610343|ZMYM2	REV__ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	HCT116MG_D190212_S4	4	432.2706298828125	3	432.885024	1295.63324	0.29759	0.00012882	-0.36394	-0.00015754	-0.066356	-2.8725E-05	433.21894421198556	27.247	0.41555	26.935	26.794	27.21	-0.3114					10	7	2	0	0	0	0.31182	1	9834	9834		0.62683	0.12087	1	2624100	+		24972	11721	15916	16002	24008	24008					-0.002748713086020871
PQNGKQDPP	9	Unmodified	_PQNGKQDPP_					0	0	0			REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant	REV__ENAM|p.S1035Kfs*7|1|0.08|ENSG00000132464|chr4:70644526-70644527|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	490.74383544921875	2	490.743431	979.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.219	1	18.295	17.795	18.795	0.076334								0	0	0	0.35515	1	6173	6173		36.127	2.0246	1		+		24973	10455	15917	16003	24009	24009					-0.018248776303494196
PQNKDQVLPQ	10	Unmodified	_PQNKDQVLPQ_					0	0	0		ENSG00000186143|ENST00000335524|PRR30	ENSG00000186143|ENST00000335524|PRR30	ENSG00000186143|ENST00000335524|PRR30	MULTI-MSMS	HCT116MG_D190212_S2	2	584.8030395507812	2	583.811845	1165.60914	0.42191	0.00024631	0.094572	5.5212E-05	0.51648	0.00030153	584.3129412834483	26.536	0.20798	26.174	26.076	26.284	-0.36164					5	3	2	0	0	0	0.77151	1	9606	9606		14.405	0.8975	1	5059000			24974	5868	15918	16004	24010	24010					0.032956115293927724
PQNSKRFFL	9	Unmodified	_PQNSKRFFL_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	HCT116MG_D190212_S2	2	568.7438354492188	2	568.81419	1135.61383	0.6631	0.00037718	-1.3194	-0.00075052	-0.65634	-0.00037334	568.8138358466672	44.613	0.1592	44.528	44.428	44.588	-0.084797					4	2	2	0	0	0	0.59184	1	16936	16936		11.64	0.81637	1	4486800			24975	9548	15919	16005	24011	24011					0.051445404628111646
PQNSPQTTPQP	11	Unmodified	_PQNSPQTTPQP_					0	0	0		UCN2|p.R41Q|1|0.3|ENSG00000145040|chr3:48563003-48563003|C/T|missense_variant	UCN2|p.R41Q|1|0.3|ENSG00000145040|chr3:48563003-48563003|C/T|missense_variant	UCN2|p.R41Q|1|0.3|ENSG00000145040|chr3:48563003-48563003|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	598.2711181640625	2	597.791109	1193.56767	0.48226	0.00028829	0.17442	0.00010427	0.65668	0.00039256	597.7909968982442	16.614	0.57213	16.7	16.341	16.913	0.085423					17	10	2	0	0	0	0.3256	1	5504	5504		23.79	0	1	3296000			24976	18678	15920	16006	24012	24012					-0.021375692299670845
PQPASGSPGPQ	11	Unmodified	_PQPASGSPGPQ_					0	0	0			REV__ENST00000490312.1_1_1:38022595-38023350:+|nuORF	REV__ENST00000490312.1_1_1:38022595-38023350:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	511.7481994628906	2	511.748713	1021.48287	0.15152	7.7541E-05	0.25143	0.00012867	0.40295	0.00020621	511.7488109689471	19.455	0.62502	19.515	19.229	19.854	0.05983					31	11	4	0	0	0	0.3318	1	6640	6640		61.09	1.016	1	28815000	+		24977	12956	15921	16007	24013	24013					-0.027008949758965173
PQPDNLGV	8	Unmodified	_PQPDNLGV_					0	0	0		ENST00000586958.1_1_19:38880992-38882662:+|nuORF	ENST00000586958.1_1_19:38880992-38882662:+|nuORF	ENST00000586958.1_1_19:38880992-38882662:+|nuORF	MSMS	HCT116MG_D190212_S3	3	420.55780029296875	2	420.216517	838.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.333	1	24.255	23.755	24.755	-0.077765								0	0	0	0.85589	1	8636	8636		18.135	0	1				24978	9001	15922	16008	24014	24014					-0.007190500620367857
PQPDPRPDSQP	11	Unmodified	_PQPDPRPDSQP_					0	0	0		nc|ENSG00000167371|Q7Z6L0-3|PRRT2;PRRT2|p.G259Vfs*54|1|0.25|ENSG00000167371|chr16:29813825-29813825|G/-|frameshift_variant;ENSG00000167371|ENST00000358758|PRRT2;nc|ENSG00000167371|Q7Z6L0-2|PRRT2	nc|ENSG00000167371|Q7Z6L0-3|PRRT2	nc|ENSG00000167371|Q7Z6L0-3|PRRT2	MULTI-MSMS	HCT116MG_D190212_S3	3	617.2969360351562	2	617.296559	1232.57856	0.42137	0.00026011	0.54034	0.00033355	0.96171	0.00059366	617.2968833211726	24.691	0.67691	24.608	24.341	25.018	-0.083694					16	12	2	0	0	0	0.72792	1	8762	8762		11.495	0.6952	1	7896200			24979	4916	15923	16009	24015	24015					-0.028421668556802615
PQPDVAKDSWA	11	Unmodified	_PQPDVAKDSWA_					0	0	0		ZHX2|p.Q413Pfs*31|1|0.32|ENSG00000178764|chr8:122952743-122952744|-/C|frameshift_variant;ZHX2|p.Q531Rfs*19|1|0.33|ENSG00000178764|chr8:122953096-122953096|C/-|frameshift_variant;ZHX2|p.T685Rfs*4|1|0.18|ENSG00000178764|chr8:122953560-122953560|A/-|frameshift_variant;ZHX2|p.M716Wfs*31|1|0.71|ENSG00000178764|chr8:122953653-122953653|C/-|frameshift_variant;ZHX2|p.K736Sfs*11|1|0.35|ENSG00000178764|chr8:122953713-122953713|A/-|frameshift_variant;ENSG00000178764|ENST00000314393|ZHX2	ZHX2|p.Q413Pfs*31|1|0.32|ENSG00000178764|chr8:122952743-122952744|-/C|frameshift_variant	ZHX2|p.Q413Pfs*31|1|0.32|ENSG00000178764|chr8:122952743-122952744|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	607.798583984375	2	607.296027	1212.5775	1.0654	0.00064703	-0.37909	-0.00023022	0.68634	0.00041681	607.2956892413027	27.797	1.0293	27.476	26.68	27.71	-0.32157					33	19	2	0	0	0	0.73156	1	9757	9757		10.151	0.76745	1	3838500			24980	5515	15924	16010	24016	24016					-0.020283812245679655
PQPLLLRLAA	10	Unmodified	_PQPLLLRLAA_					0	0	0			REV__nc|ENSG00000184599|Q7Z5A8-2|TAFA3	REV__nc|ENSG00000184599|Q7Z5A8-2|TAFA3	MSMS	HCT116MG_D190212_S1	1	546.1481323242188	2	546.350409	1090.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.565	1	46.565	46.065	47.065	0								0	0	0	0.95648	1	17671	17671		3.2813	1.2216	1		+		24981	17244	15925	16011	24017	24017					0.14454874536363604
PQPPEKLDSP	10	Unmodified	_PQPPEKLDSP_					0	0	0			REV__ENST00000483339.2_1_10:25284788-25304865:-|nuORF	REV__ENST00000483339.2_1_10:25284788-25304865:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	554.1688232421875	2	554.287671	1106.56079	0.31271	0.00017333	-0.26445	-0.00014658	0.048254	2.6747E-05	554.2870936175556	51.376	0.1539	51.197	51.069	51.223	-0.17868					4	2	2	0	0	0	0.76634	1	19666	19666		14.838	2.3067	1	5754200	+		24982	10458	15926	16012	24018	24018					0.011771178894605328
PQPQTPGLGVP	11	Unmodified	_PQPQTPGLGVP_					0	0	0		ENST00000357203.7_1_3:50603448-50605047:-|nuORF	ENST00000357203.7_1_3:50603448-50605047:-|nuORF	ENST00000357203.7_1_3:50603448-50605047:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	545.7990112304688	2	545.798206	1089.58186	0.24699	0.0001348	0.683	0.00037278	0.92999	0.00050759	546.299871861109	41.66	0.35274	41.357	41.22	41.572	-0.30257					21	14	2	0	0	0	0.39464	1	15486	15486		55.503	9.8031	1	14256000			24983	7306	15927	16013	24019	24019					0.04065127988997119
PQPQTPGLGVP	11	Unmodified	_PQPQTPGLGVP_					0	0	0		ENST00000357203.7_1_3:50603448-50605047:-|nuORF	ENST00000357203.7_1_3:50603448-50605047:-|nuORF	ENST00000357203.7_1_3:50603448-50605047:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	545.7991943359375	2	545.798206	1089.58186	0.53321	0.00029103	0.36114	0.00019711	0.89435	0.00048814	545.798357797905	41.622	0.25652	41.246	41.185	41.442	-0.37637					33	17	3	0	0	0	0.39464	2	15275	15275;15280		55.503	11.73	1	10728000			24984	7306	15927	16013	24020;24021	24020					0.04065127988997119
PQPRPPSDGPR	11	Unmodified	_PQPRPPSDGPR_					0	0	0			REV__USP43|p.V1023Sfs*4|1|0.39|ENSG00000154914|chr17:9728679-9728679|C/-|frameshift_variant	REV__USP43|p.V1023Sfs*4|1|0.39|ENSG00000154914|chr17:9728679-9728679|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	602.315673828125	2	602.315086	1202.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.92	1	25.63	25.13	26.13	-0.29022								0	0	0	0.84073	1	9209	9209		27.629	8.3718	1		+		24985	12689	15928	16014	24022	24022					0.022415494807319192
PQPRRPNRRRR	11	Unmodified	_PQPRRPNRRRR_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	496.96746826171875	3	496.966286	1487.87703	0.46664	0.00023191	0.16404	8.1522E-05	0.63068	0.00031343	496.9663176427822	53.152	1.2349	53.152	52.485	53.72	0					44	23	3	0	0	0	0.74191	1	20307	20307		0.36667	0.27183	1	35219000	+		24986	16216	15929	16015	24023	24023					0.15260393691005447
PQPTENQPQG	10	Unmodified	_PQPTENQPQG_					0	0	0			REV__ENST00000473046.1_1_1:183252983-183259825:-|nuORF	REV__ENST00000473046.1_1_1:183252983-183259825:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	548.2567138671875	2	548.256902	1094.49925	0.28516	0.00015634	-0.21768	-0.00011935	0.067478	3.6995E-05	548.2567082474941	17.643	0.57139	17.471	17.276	17.847	-0.17167					12	10	2	0	0	0	0.55624	1	5852	5852		31.268	1.4278	1	2892400	+		24987	12742	15930	16016	24024	24024					-0.044218138098358395
PQPYGQWGQWY	11	Unmodified	_PQPYGQWGQWY_					0	0	0		ENST00000486392.5_1_2:70439853-70442301:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000486392.5_1_2:70439853-70442301:-|nuORF	ENST00000486392.5_1_2:70439853-70442301:-|nuORF	MSMS	HCT116MG_D190212_S4	4	705.319580078125	2	705.317294	1408.62004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.988	1	30.624	30.124	31.124	-0.36416								0	0	0	0.93717	1	11228	11228		13.042	4.2971	1				24988	2495	15931	16017	24025	24025					-0.06792986096320419
PQQGYSSQ	8	Unmodified	_PQQGYSSQ_					0	0	0			REV__EWSR1|p.M605Hfs*40|1|0.09|ENSG00000182944|chr22:29299731-29299732|-/C|frameshift_variant	REV__EWSR1|p.M605Hfs*40|1|0.09|ENSG00000182944|chr22:29299731-29299732|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	894.3955688476562	1	894.395187	893.38791	0.5462	0.00048852	0.45127	0.00040362	0.99747	0.00089213	894.3954500270651	23.358	0.52406	23.111	22.748	23.272	-0.24775					16	9	2	0	0	0	0.65382	1	8122	8122		27.629	0.74515	1	1571800	+		24989	16800	15932	16018	24026	24026					-0.063048284470824
PQQPSAEGPAG	11	Unmodified	_PQQPSAEGPAG_					0	0	0		ENSG00000283599|ENST00000636096|unknown	ENSG00000283599|ENST00000636096|unknown	ENSG00000283599|ENST00000636096|unknown	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2467651367188	2	519.74617	1037.47779	0.12303	6.3944E-05	-1.5474	-0.00080428	-1.4244	-0.00074033	519.7459430282812	16.958	1.5085	17.042	15.924	17.433	0.084467					36	28	2	0	0	0	0.67041	1	5368	5368		27.629	7.2143	1	8940100			24990	6702	15933	16019	24027	24027					-0.039451988385280856
PQQPSAEGPAG	11	Unmodified	_PQQPSAEGPAG_					0	0	0		ENSG00000283599|ENST00000636096|unknown	ENSG00000283599|ENST00000636096|unknown	ENSG00000283599|ENST00000636096|unknown	MULTI-MSMS	HCT116MG_D190212_S4	4	520.2442016601562	2	519.74617	1037.47779	-0.13886	-7.2171E-05	-1.6223	-0.0008432	-1.7612	-0.00091537	519.7460215473945	17.118	1.1119	16.947	16.217	17.329	-0.17047					43	21	3	0	0	0	0.63759	1	5598	5598		31.268	0.6318	1	6319100			24991	6702	15933	16019	24028	24028					-0.039451988385280856
PQQSQQMVP	9	Unmodified	_PQQSQQMVP_					0	0	0			REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant	REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	521.7533569335938	2	521.752941	1041.49133	0.52107	0.00027187	0.43388	0.00022638	0.95495	0.00049825	521.7531071723025	31.31	0.26022	31.31	31.18	31.44	0					5	4	2	0	0	0	0.25445	1	11548	11548		2.0598	0.21551	1	5302100	+		24992	13211	15934	16020	24029	24029					-0.027756643309203355
PQQTLSPDPAH	11	Unmodified	_PQQTLSPDPAH_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	MULTI-MSMS	HCT116MG_D190212_S3	3	595.7941284179688	2	595.793652	1189.57275	0.30264	0.00018031	0.36488	0.00021739	0.66752	0.0003977	595.7937033286239	17.416	0.57215	17.497	17.169	17.742	0.081358					18	10	3	0	0	0	0.61797	1	5826	5826		33.445	13.03	1	10419000			24993	4119	15935	16021	24030	24030					-0.01445265367351567
PQQTLSPDPAH	11	Unmodified	_PQQTLSPDPAH_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	MULTI-MSMS	HCT116MG_D190212_S3	3	595.793701171875	2	595.793652	1189.57275	0.48075	0.00028643	0.77337	0.00046077	1.2541	0.00074719	595.7935384584122	18.052	0.7288	18.129	17.737	18.465	0.076334					35	13	4	0	0	0	0.55672	1	6110	6110		40.239	17.581	1	19988000			24994	4119	15935	16021	24031	24031					-0.01445265367351567
PQQTLSPDPAH	11	Unmodified	_PQQTLSPDPAH_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	MULTI-MSMS	HCT116MG_D190212_S4	4	595.79345703125	2	595.793652	1189.57275	0.7132	0.00042492	0.1997	0.00011898	0.9129	0.0005439	595.7934368443881	17.631	0.51928	17.46	17.173	17.692	-0.17064					22	9	4	0	0	0	0.7093	1	5834	5834		18.373	5.3306	1	8785600			24995	4119	15935	16021	24032	24032					-0.01445265367351567
PQQTLSPDPAH	11	Unmodified	_PQQTLSPDPAH_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	MULTI-SECPEP	HCT116MG_D190212_S4	4	596.2847290039062	2	595.793652	1189.57275	0.88129	0.00052507	0.33665	0.00020057	1.2179	0.00072564	595.793409202779	18.335	0.8294	18.155	17.682	18.511	-0.18052					45	15	4	0	0	0	0.36044	1	6286	6286		16.566	7.8205	1	13070000			24996	4119	15935	16021	24033	24033					-0.01445265367351567
PQQTLSPDPAH	11	Unmodified	_PQQTLSPDPAH_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	595.793652	1189.57275	0.55636	0.00033148	-0.18485	-0.00011013	0.37151	0.00022134	595.7933556634973	18.084	0.4177	17.728	17.493	17.91	-0.35647	0.16599	-0.00042046	NaN	33.445	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8640800			24997	4119	15935	16021							-0.01445265367351567
PQRGRKAPPPQ	11	Unmodified	_PQRGRKAPPPQ_					0	0	0		ENST00000544691.6_1_14:24911464-24911732:-|nuORF	ENST00000544691.6_1_14:24911464-24911732:-|nuORF	ENST00000544691.6_1_14:24911464-24911732:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	615.6602783203125	2	616.354545	1230.69454	0.35292	0.00021752	4.0312	0.0024846	4.3841	0.0027022	616.8591383613851	28.846	0.20327	28.53	28.352	28.555	-0.31613					6	3	2	0	0	0	0.36308	1	10492	10492		7.609	6.2794	1	14351000			24998	8711	15936	16022	24034	24034					0.0884182150568904
PQRKSLYERLE	11	Unmodified	_PQRKSLYERLE_					0	0	0		ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000488426.5_1_6:31922795-31926316:-|nuORF	ENST00000492185.5_1_6:31922795-31926696:-|nuORF	ENST00000492185.5_1_6:31922795-31926696:-|nuORF	MSMS	HCT116MG_D190212_S2	2	709.8933715820312	2	709.891158	1417.76776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.299	1	48.155	47.655	48.655	-0.1437								0	0	0	0.94755	1	18449	18449		7.609	2.7119	1				24999	8315	15937	16023	24035	24035					0.0755890543764508
PQRLSRSTLVP	11	Unmodified	_PQRLSRSTLVP_					0	0	0			REV__ENST00000560042.1_1_15:69706723-69714099:+|nuORF	REV__ENST00000560042.1_1_15:69706723-69714099:+|nuORF	MSMS	HCT116MG_D190212_S3	3	627.216552734375	2	627.369861	1252.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.883	1	45.572	45.072	46.072	-0.31094								0	0	0	0.95023	1	17192	17192		6.2058	0	1		+		25000	16483	15938	16024	24036	24036					0.10891555100101868
PQSASVMGPHK	11	Unmodified	_PQSASVMGPHK_					0	0	0			REV__ENST00000369408.9_1_6:90305719-90326311:+|nuORF	REV__ENST00000369408.9_1_6:90305719-90326311:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	569.7871704101562	2	569.787315	1137.56008	0.56792	0.00032359	-0.44033	-0.00025089	0.12759	7.2699E-05	569.7870530696713	29.164	0.62472	28.942	28.525	29.15	-0.22196					19	11	2	0	0	0	0.7332	1	10545	10545		9.544	1.3884	1	4945100	+		25001	15142	15939	16025	24037	24037					-0.0032000003120629117
PQSSHWGQP	9	Unmodified	_PQSSHWGQP_					0	0	0		RNASEL|p.A345Qfs*3|1|0.26|ENSG00000135828|chr1:182585774-182585774|C/-|frameshift_variant	RNASEL|p.A345Qfs*3|1|0.26|ENSG00000135828|chr1:182585774-182585774|C/-|frameshift_variant	RNASEL|p.A345Qfs*3|1|0.26|ENSG00000135828|chr1:182585774-182585774|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	512.73876953125	2	512.235773	1022.45699	-0.035605	-1.8238E-05	-0.21158	-0.00010838	-0.24719	-0.00012662	512.738535237407	17.094	0.41637	17.178	17.016	17.433	0.084467					10	7	2	0	0	0	0.43775	1	5807	5807		20.454	0	1	1496400			25002	18113	15940	16026	24038	24038					-0.05333744427514375
PQTFRNAY	8	Unmodified	_PQTFRNAY_					0	0	0		INTS6|p.D546G|1|0.34|ENSG00000102786|chr13:51376140-51376140|T/C|missense_variant;ENST00000504674.1_1_5:39719945-39720791:-|nuORF;nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	INTS6|p.D546G|1|0.34|ENSG00000102786|chr13:51376140-51376140|T/C|missense_variant	INTS6|p.D546G|1|0.34|ENSG00000102786|chr13:51376140-51376140|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	498.2673645019531	2	498.748516	995.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.545	1	22.16	21.66	22.66	-0.3852								0	0	0	0.8837	1	7992	7992		12.532	1.7076	1				25003	1851	15941	16027	24039	24039					-0.0154426990511638
PQTTGQPQ	8	Unmodified	_PQTTGQPQ_					0	0	0			REV__ENSG00000102804|ENST00000458659|TSC22D1	REV__ENSG00000102804|ENST00000458659|TSC22D1	MULTI-SECPEP	HCT116MG_D190212_S1	1	428.2503356933594	2	428.711599	855.408646	0.10566	4.5299E-05	-0.26229	-0.00011245	-0.15663	-6.7148E-05	428.7113918450704	21.045	0.26817	21.045	20.904	21.173	0					8	4	3	0	0	0	0.28275	1	7434	7434		13.508	1.8676	1	6761700	+		25004	11162	15942	16028	24040	24040					-0.024842380674272135
PQTVERRRPT	10	Unmodified	_PQTVERRRPT_					0	0	0			REV__ENST00000359128.9_1_16:3614897-3617284:-|nuORF	REV__ENST00000359128.9_1_16:3614897-3617284:-|nuORF	MSMS	HCT116MG_D190212_S1	1	620.3489990234375	2	620.34946	1238.68437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.093	1	31.093	30.593	31.593	0								0	0	0	0.94339	1	11428	11428		6.2058	0.47393	1		+		25005	15068	15943	16029	24041	24041					0.07457213780458005
PQVPPKPL	8	Unmodified	_PQVPPKPL_					0	0	0		ENST00000473513.5_1_12:32717132-32732570:+|nuORF;FGD4|p.K16Nfs*24|1|0.35|ENSG00000139132|chr12:32576401-32576401|A/-|frameshift_variant;FGD4|p.K41Rfs*10|1|0.04|ENSG00000139132|chr12:32581988-32581989|AA/-|frameshift_variant;FGD4|p.G57Efs*23|1|0.05|ENSG00000139132|chr12:32582036-32582037|-/AAAA|frameshift_variant;FGD4|p.L215Ffs*4|1|0.14|ENSG00000139132|chr12:32598536-32598537|-/T|frameshift_variant;FGD4|p.K657Nfs*9|1|0.16|ENSG00000139132|chr12:32638720-32638720|A/-|frameshift_variant;FGD4|p.Q681Rfs*31|1|0.19|ENSG00000139132|chr12:32638788-32638788|C/-|frameshift_variant;ENSG00000139132|ENST00000534526|FGD4	ENST00000473513.5_1_12:32717132-32732570:+|nuORF	ENST00000473513.5_1_12:32717132-32732570:+|nuORF	MSMS	HCT116MG_D190212_S4	4	438.27105712890625	2	438.271096	874.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.521	1	40.142	39.642	40.642	-0.37828								0	0	0	0.8837	1	14869	14869		14.582	1.0738	1				25006	3599	15944	16030	24042	24042					0.08535580628085881
PQVRGRVG	8	Unmodified	_PQVRGRVG_					0	0	0			REV__MGAT5B|p.L211Afs*133|1|0.36|ENSG00000167889|chr17:76904355-76904356|-/C|frameshift_variant	REV__MGAT5B|p.L211Afs*133|1|0.36|ENSG00000167889|chr17:76904355-76904356|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	868.5107421875	1	868.51116	867.503883	0.882	0.00076603	0.20652	0.00017936	1.0885	0.00094539	868.5111267941868	48.274	0.88224	47.958	47.566	48.449	-0.31596					40	16	3	0	0	0	0.8672	1	18310	18310		2.3027	0	1	63208000	+		25007	17026	15945	16031	24043	24043					0.06483159914296266
PQVRGRVG	8	Unmodified	_PQVRGRVG_					0	0	0			REV__MGAT5B|p.L211Afs*133|1|0.36|ENSG00000167889|chr17:76904355-76904356|-/C|frameshift_variant	REV__MGAT5B|p.L211Afs*133|1|0.36|ENSG00000167889|chr17:76904355-76904356|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	868.51116	867.503883	0.7221	0.00062715	0.44016	0.00038228	1.1623	0.0010094	868.511331768983	48.226	1.3292	47.858	47.379	48.708	-0.36727	-0.049714	0.00010005	NaN	2.3027	65	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91487000	+		25008	17026	15945	16031							0.06483159914296266
PQVTHDAGAP	10	Unmodified	_PQVTHDAGAP_					0	0	0			REV__ENST00000564987.1_1_16:23535694-23546228:-|nuORF	REV__ENST00000564987.1_1_16:23535694-23546228:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	496.7429504394531	2	496.743431	991.472308	0.2465	0.00012245	0.20764	0.00010315	0.45414	0.00022559	496.743416284476	21.278	1.4134	21.297	20.594	22.008	0.018446					41	26	2	0	0	0	0.33066	1	7254	7254		47.749	3.8904	1	10149000	+		25009	16527	15946	16032	24044	24044					-0.02376877630342733
PQYGGYGAPA	10	Unmodified	_PQYGGYGAPA_					0	0	0			REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	490.7250061035156	2	490.727249	979.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.694	1	20.729	20.229	21.229	0.034473								0	0	0	0.75886	1	7172	7172		34.102	10.082	1		+		25010	11244	15947	16033	24045	24045					-0.05059665033343208
PQYYRKEVK	9	Unmodified	_PQYYRKEVK_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MSMS	HCT116MG_D190212_S3	3	605.8316650390625	2	605.83258	1209.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.537	1	12.599	12.099	13.099	0.06246								0	0	0	0.7701	1	3917	3917		0.52476	0	1		+		25011	12063	15948	16034	24046	24046					0.05416792288679062
PRAAELRLRY	10	Unmodified	_PRAAELRLRY_					0	0	0			REV__nc|ENSG00000162729|Q969P0-2|IGSF8	REV__nc|ENSG00000162729|Q969P0-2|IGSF8	MSMS	HCT116MG_D190212_S2	2	622.8644409179688	2	622.864746	1243.71494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.284	1	17.922	17.422	18.422	-0.36206								0	0	0	0.94339	1	6275	6275		6.2058	0	1		+		25012	12893	15949	16035	24047	24047					0.10282992165480209
PRAHPDFNGG	10	Unmodified	_PRAHPDFNGG_					0	0	0		nc|ENSG00000183876|Q5FYB1-2|ARSI;ENSG00000183876|ENST00000328668|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	MULTI-MSMS	HCT116MG_D190212_S1	1	534.2546997070312	2	534.254497	1066.49444	0.39791	0.00021259	0.041245	2.2035E-05	0.43916	0.00023462	534.2545167837785	27.826	0.41648	27.826	27.644	28.06	0					12	7	3	0	0	0	0.53455	1	10117	10117		32.786	1.5173	1	23000000			25013	5748	15950	16036	24048	24048					-0.03614653161912429
PRAKKSSR	8	Unmodified	_PRAKKSSR_					0	0	0			REV__SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant	REV__SCAF1|p.T1181Pfs*28|8|0.37|ENSG00000126461|chr19:49654785-49654785|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	465.28546142578125	2	465.2856	928.556647	0.17788	8.2767E-05	0.18472	8.5948E-05	0.36261	0.00016871	465.285645317855	52.257	1.0847	52.257	51.451	52.536	0					29	20	3	0	0	0	0.8672	1	20062	20062		2.3027	0	1	36001000	+		25014	11839	15951	16037	24049	24049					0.08951117977085232
PRCLSIKFLY	10	Unmodified	_PRCLSIKFLY_					0	0	0			REV__ENST00000598734.1_1_19:39421606-39422228:+|nuORF	REV__ENST00000598734.1_1_19:39421606-39422228:+|nuORF	MSMS	HCT116MG_D190212_S3	3	620.3489379882812	2	620.349551	1238.68455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.884	1	36.583	36.083	37.083	-0.30113								0	0	0	0.95351	1	13644	13644		3.9444	0.66309	1		+		25015	16735	15952	16038	24050	24050					0.07475497456107405
PRDAEQEEE	9	Unmodified	_PRDAEQEEE_					0	0	0		ENST00000531121.5_1_11:65686926-65687405:+|nuORF	ENST00000531121.5_1_11:65686926-65687405:+|nuORF	ENST00000531121.5_1_11:65686926-65687405:+|nuORF	MSMS	HCT116MG_D190212_S4	4	368.1587829589844	3	368.159759	1101.45745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.907	1	13.744	13.244	14.244	-0.16233								0	0	0	0.76906	1	4382	4382		4.1895	0.59301	1				25016	8618	15953	16039	24051	24051					-0.08922414289008884
PRDAPLAGSEP	11	Unmodified	_PRDAPLAGSEP_					0	0	0		ENSG00000273238|ENST00000610212|TMEM271	ENSG00000273238|ENST00000610212|TMEM271	ENSG00000273238|ENST00000610212|TMEM271	MULTI-MSMS	HCT116MG_D190212_S1	1	370.5233154296875	3	370.524372	1108.55129	-0.14899	-5.5203E-05	-0.88249	-0.00032698	-1.0315	-0.00038219	370.5239473448726	23.11	0.72948	23.11	22.689	23.418	0					22	11	3	0	0	0	0.72373	1	8153	8153		7.0371	0	1	37575000			25017	6670	15954	16040	24052	24052					0.0013534960392007633
PRDEAEGP	8	Unmodified	_PRDEAEGP_					0	0	0			REV__ENST00000433948.5_2_12:50189219-50189822:-|nuORF	REV__ENST00000433948.5_2_12:50189219-50189822:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	436.2168884277344	2	435.701232	869.38791	0.033776	1.4716E-05	0.17439	7.5983E-05	0.20817	9.07E-05	435.7013001922856	19.558	0.41614	19.187	18.938	19.355	-0.37099					12	7	3	0	0	0	0.30262	1	6697	6697		8.5933	0	1	8017700	+		25018	15601	15955	16041	24053	24053					-0.05200828447095773
PREEQRLPQP	10	Unmodified	_PREEQRLPQP_					0	0	0			REV__ENST00000303592.3_1_22:38823883-38851043:-|nuORF	REV__ENST00000303592.3_1_22:38823883-38851043:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	417.2261962890625	3	417.226438	1248.65748	-0.4833	-0.00020165	0.55134	0.00023003	0.068042	2.8389E-05	417.22630745445457	15.356	0.23469	15.194	15.028	15.263	-0.16173					6	4	2	0	0	0	0.88258	1	4969	4969		2.8433	0	1	806130	+		25019	14801	15956	16042	24054	24054					0.04310105169270173
PREQWRREQ	9	Unmodified	_PREQWRREQ_					0	0	0		ENSG00000047644|ENST00000380861|WWC3;nc|ENSG00000047644|Q9ULE0-2|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.890048	1283.64832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5451	1	2.2806	1.7806	2.7806	-0.26456								0	0	0	0.77018	1	773	773		0.26902	0	1				25020	1030	15957	16043	24055	24055					0.017837566035950658
PRGGSFGY	8	Unmodified	_PRGGSFGY_					0	0	0		ENSG00000142227|ENST00000270221|EMP3	ENSG00000142227|ENST00000270221|EMP3	ENSG00000142227|ENST00000270221|EMP3	MULTI-MSMS	HCT116MG_D190212_S1	1	420.7035217285156	2	420.703577	839.392602	0.068447	2.8796E-05	-0.18728	-7.879E-05	-0.11884	-4.9995E-05	420.70353958971276	27.947	0.36431	27.947	27.8	28.164	0					9	6	2	0	0	0	0.73076	1	10164	10164		19.439	4.8573	1	12673000			25021	3751	15958	16044	24056	24056					-0.033518995136660124
PRGGSFGY	8	Unmodified	_PRGGSFGY_					0	0	0		ENSG00000142227|ENST00000270221|EMP3	ENSG00000142227|ENST00000270221|EMP3	ENSG00000142227|ENST00000270221|EMP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	420.703577	839.392602	0.068447	2.8796E-05	-0.18728	-7.879E-05	-0.11884	-4.9995E-05	420.70353958971276	27.947	0.36431	27.947	27.8	28.164	0	-0.079964	-0.00012434	NaN	19.439	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12673000			25022	3751	15958	16044							-0.033518995136660124
PRGGSFGY	8	Unmodified	_PRGGSFGY_					0	0	0		ENSG00000142227|ENST00000270221|EMP3	ENSG00000142227|ENST00000270221|EMP3	ENSG00000142227|ENST00000270221|EMP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	420.703577	839.392602	0.034387	1.4467E-05	0.13826	5.8167E-05	0.17265	7.2634E-05	420.7035406582014	28.437	0.3095	28.107	27.977	28.287	-0.32987	0.079964	0.00014957	NaN	19.439	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46326000			25023	3751	15958	16044							-0.033518995136660124
PRGPHVLQ	8	Unmodified	_PRGPHVLQ_					0	0	0			REV__ENST00000253193.8_1_19:33685756-33693874:+|nuORF	REV__ENST00000253193.8_1_19:33685756-33693874:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	452.2613220214844	2	452.261594	902.508634	0.31668	0.00014322	-0.30727	-0.00013897	0.0094096	4.2556E-06	452.26146333608347	28.328	0.47427	28.328	28.06	28.535	0					16	8	2	0	0	0	0.53394	1	10291	10291		38.151	38.151	1	9877600	+		25024	14594	15959	16045	24057	24057					0.053480440570297105
PRHGGFIL	8	Unmodified	_PRHGGFIL_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;SUPT5H|p.P800Hfs*154|1|0.21|ENSG00000196235|chr19:39473425-39473425|C/-|frameshift_variant;ENST00000595368.5_1_19:39936232-39948556:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MSMS	HCT116MG_D190212_S1	1	448.76031494140625	2	448.758687	895.502821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.252	1	50.252	49.752	50.752	0								0	0	0	0.8837	1	19169	19169		0.79363	0	1				25025	6054	15960	16046	24058	24058					0.05088945545378465
PRHRRRDWLL	10	Unmodified	_PRHRRRDWLL_					0	0	0			REV__ENST00000372692.8_1_9:131446118-131453502:+|nuORF	REV__ENST00000372692.8_1_9:131446118-131453502:+|nuORF	MSMS	HCT116MG_D190212_S1	1	702.9109497070312	2	702.907811	1403.80107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.835	1	18.835	18.335	19.335	0								0	0	0	0.95648	1	6498	6498		3.2813	0.28607	1		+		25026	15177	15961	16047	24059	24059					0.11531996790881749
PRIKSREDV	9	Unmodified	_PRIKSREDV_					0	0	0		ENST00000556245.1_1_14:62011269-62016546:+|nuORF;nc|ENSG00000027075|P24723-2|PRKCH;ENSG00000027075|ENST00000332981|PRKCH	ENST00000556245.1_1_14:62011269-62016546:+|nuORF	ENST00000556245.1_1_14:62011269-62016546:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.2108154296875	3	367.212128	1098.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.945	1	56.645	56.145	57.145	-0.3004								0	0	0	0.76995	1	21361	21361		1.0715	0	1				25027	959	15962	16048	24060	24060					0.06919335111842884
PRKPKRQR	8	Unmodified	_PRKPKRQR_					0	0	0		nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617|NPIPB3;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000254206|ENST00000698511|NPIPB11;ENSG00000185864|ENST00000682606|NPIPB4;ENSG00000169246|ENST00000542817|NPIPB3;nc|ENSG00000169246|Q92617-2|NPIPB3;nc|ENSG00000169246|Q92617-3|NPIPB3	nc|ENSG00000169246|Q92617-5|NPIPB3	nc|ENSG00000169246|Q92617-5|NPIPB3	MSMS	HCT116MG_D190212_S2	2	533.3399047851562	2	533.341241	1064.66793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.341	1	56.159	55.659	56.659	-0.18261								0	0	0	0.8837	1	21738	21738		0.69038	0	1				25028	5055	15963	16049	24061	24061					0.1381817740502811
PRKRPVHRV	9	Unmodified	_PRKRPVHRV_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MSMS	HCT116MG_D190212_S4	4	382.24334716796875	3	382.243986	1143.71013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.676	1	59.401	58.901	59.901	-0.27491								0	0	0	0.76995	1	22463	22463		1.0715	0	1				25029	1967	15964	16050	24062	24062					0.14402152813408975
PRKRYRRKLKK	11	Unmodified	_PRKRYRRKLKK_					0	0	0		ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	MSMS	HCT116MG_D190212_S2	2	765.0057373046875	2	765.004785	1527.99502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.524	1	53.335	52.835	53.835	-0.1894								0	0	0	0.96149	1	20586	20586		0.30703	0	1				25030	4560	15965	16051	24063	24063					0.2521395322692115
PRLTIHTPP	9	Unmodified	_PRLTIHTPP_					0	0	0		TPR|p.A2089T|1|0.25|ENSG00000047410|chr1:186323718-186323718|C/T|missense_variant	TPR|p.A2089T|1|0.25|ENSG00000047410|chr1:186323718-186323718|C/T|missense_variant	TPR|p.A2089T|1|0.25|ENSG00000047410|chr1:186323718-186323718|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	516.3019409179688	2	516.303458	1030.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.986	1	40.684	40.184	41.184	-0.30185								0	0	0	0.76781	1	15233	15233		8.5933	0	1				25031	18284	15966	16052	24064	24064					0.07829155434069435
PRMRWRRRVTR	11	Unmodified	_PRMRWRRRVTR_					0	0	0		ENST00000592505.1_1_19:11038470-11038518:-|nuORF;ENST00000253031.6_1_19:11034814-11038527:-|nuORF	ENST00000592505.1_1_19:11038470-11038518:-|nuORF	ENST00000592505.1_1_19:11038470-11038518:-|nuORF	MSMS	HCT116MG_D190212_S3	3	785.5851440429688	2	785.460219	1568.90588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.499	1	31.229	30.729	31.729	-0.27028								0	0	0	0.96138	1	11510	11510		1.0715	0	1				25032	6805	15967	16053	24065	24065					0.14418794995776807
PRNFPPRF	8	Unmodified	_PRNFPPRF_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MSMS	HCT116MG_D190212_S2	2	515.7822265625	2	515.782693	1029.55083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.935	1	56.756	56.256	57.256	-0.17904								0	0	0	0.8837	1	21975	21975		9.3474	0	1				25033	5354	15968	16054	24066	24066					0.03724019465425954
PRNNCIAVEP	10	Unmodified	_PRNNCIAVEP_					0	0	0		ENST00000495075.5_1_3:139062798-139065729:+|nuORF	ENST00000495075.5_1_3:139062798-139065729:+|nuORF	ENST00000495075.5_1_3:139062798-139065729:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	556.78076171875	2	556.77949	1111.54443	0.22433	0.0001249	-2.0349	-0.001133	-1.8106	-0.0010081	557.2796713930113	32.302	0.57084	31.923	31.43	32.001	-0.37924					15	10	2	0	0	0	0.53455	1	11674	11674		32.786	5.1569	1	3691400			25034	8376	15969	16055	24067	24067					-0.006882865483021305
PRPNAGLEVV	10	Unmodified	_PRPNAGLEVV_					0	0	0		nc|ENSG00000237149|A6NEH8|ZNF503-AS2;ENST00000466942.2_1_10:77161903-77167502:+|nuORF;ENST00000425916.4_1_10:77162993-77167502:+|nuORF;ENST00000491557.2_1_10:77163552-77167502:+|nuORF	nc|ENSG00000237149|A6NEH8|ZNF503-AS2	nc|ENSG00000237149|A6NEH8|ZNF503-AS2	MSMS	HCT116MG_D190212_S3	3	351.2010192871094	3	351.201341	1050.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.914	1	27.725	27.225	28.225	-0.18847								0	0	0	0.95381	1	10080	10080		3.8763	1.1411	1				25035	7816	15970	16056	24068	24068					0.05892547708845086
PRPNAGLEVV	10	Unmodified	_PRPNAGLEVV_					0	0	0		nc|ENSG00000237149|A6NEH8|ZNF503-AS2;ENST00000466942.2_1_10:77161903-77167502:+|nuORF;ENST00000425916.4_1_10:77162993-77167502:+|nuORF;ENST00000491557.2_1_10:77163552-77167502:+|nuORF	nc|ENSG00000237149|A6NEH8|ZNF503-AS2	nc|ENSG00000237149|A6NEH8|ZNF503-AS2	MSMS	HCT116MG_D190212_S4	4	351.2012634277344	3	351.201341	1050.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.706	1	27.384	26.884	27.884	-0.32157								0	0	0	0.96263	1	9930	9930		1.9064	0.1641	1				25036	7816	15970	16056	24069	24069					0.05892547708845086
PRPPKEPPRH	10	Unmodified	_PRPPKEPPRH_					0	0	0			REV__ENST00000465821.5_1_9:130706892-130710398:-|nuORF	REV__ENST00000465821.5_1_9:130706892-130710398:-|nuORF	MSMS	HCT116MG_D190212_S4	4	404.2324523925781	3	404.231634	1209.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.862	1	48.497	47.997	48.997	-0.365								0	0	0	0.96453	1	18105	18105		0.62683	0.35781	1		+		25037	13138	15971	16057	24070	24070					0.0766243647697138
PRPRRWEMWDP	11	Unmodified	_PRPRRWEMWDP_					0	0	0			REV__ENST00000489097.5_1_1:6527238-6527559:-|nuORF	REV__ENST00000489097.5_1_1:6527238-6527559:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.76190185546875	3	509.254222	1524.74084	0.64076	0.00032631	0.47821	0.00024353	1.119	0.00056984	509.254400610223	27.404	0.20582	27.062	26.933	27.139	-0.34201					6	3	2	0	0	0	0.36618	1	9903	9903		0.08335	0.010087	1	31185000	+		25038	16019	15972	16058	24071	24071					-0.0005448165452435205
PRPRVCRGPGL	11	Unmodified	_PRPRVCRGPGL_					0	0	0			REV__ENST00000301618.8_1_17:74865029-74878335:+|nuORF	REV__ENST00000301618.8_1_17:74865029-74878335:+|nuORF	MSMS	HCT116MG_D190212_S1	1	403.232421875	3	403.23287	1206.67678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.856	1	64.856	64.356	65.356	0								0	0	0	0.9619	1	24992	24992		0.094841	0	1		+		25039	14790	15973	16059	24072	24072					0.08170782979209434
PRQGRDGWFY	10	Unmodified	_PRQGRDGWFY_					0	0	0		ENST00000421064.5_1_22:23995358-23995538:-|nuORF	ENST00000421064.5_1_22:23995358-23995538:-|nuORF	ENST00000421064.5_1_22:23995358-23995538:-|nuORF	MSMS	HCT116MG_D190212_S1	1	427.87664794921875	3	427.875628	1280.60505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0524	1	8.0524	7.5524	8.5524	0								0	0	0	0.96937	1	2428	2428		0.13989	0	1				25040	7787	15974	16060	24073	24073					-0.024024331736882232
PRRERHRSK	9	Unmodified	_PRRERHRSK_					0	0	0		nc|ENSG00000134748|Q8NAV1-2|PRPF38A;ENSG00000134748|ENST00000257181|PRPF38A	nc|ENSG00000134748|Q8NAV1-2|PRPF38A	nc|ENSG00000134748|Q8NAV1-2|PRPF38A	MULTI-MSMS	HCT116MG_D190212_S1	1	611.3565063476562	2	611.355411	1220.69627	0.58477	0.0003575	0.74506	0.0004555	1.3298	0.000813	611.3556946349184	53.036	0.61649	53.036	52.639	53.255	0					24	11	3	0	0	0	0.75438	1	20141	20141		1.4819	0	1	19291000			25041	3301	15975	16061	24074	24074					0.09474875314299425
PRRKAGIC	8	Unmodified	_PRRKAGIC_					0	0	0		ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	MSMS	HCT116MG_D190212_S4	4	450.76385498046875	2	450.763446	899.51234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.25	1	48.885	48.385	49.385	-0.365								0	0	0	0.8837	1	18262	18262		0.79363	0	1				25042	6066	15976	16062	24075	24075					0.05856390559256397
PRRLLWLLWGF	11	Unmodified	_PRRLLWLLWGF_					0	0	0		ENST00000243776.10_1_2:220408117-220408489:-|nuORF	ENST00000243776.10_1_2:220408117-220408489:-|nuORF	ENST00000243776.10_1_2:220408117-220408489:-|nuORF	MSMS	HCT116MG_D190212_S2	2	728.9334106445312	2	728.932431	1455.85031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.026	1	31.796	31.296	32.296	-0.23009								0	0	0	0.96111	1	11836	11836		1.4819	0	1				25043	6782	15977	16063	24076	24076					0.1406189202709811
PRRPQSRRKRR	11	Unmodified	_PRRPQSRRKRR_					0	0	0		SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	498.7898254394531	3	498.310052	1491.90833	0.47691	0.00023765	0.039738	1.9802E-05	0.51665	0.00025745	498.31002018156596	53.832	2.8121	53.832	52.794	55.606	0					212	54	6	0	0	0	0.74191	2	20740	20740;20951		0.08335	0.08335	1	2305000000			25044	18180	15978	16064	24077;24078	24077					0.1820496672507943
PRRPQSRRKRR	11	Unmodified	_PRRPQSRRKRR_					0	0	0		SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	498.3106384277344	3	498.310052	1491.90833	0.3823	0.0001905	0.12	5.9797E-05	0.5023	0.0002503	498.3100651101653	54.574	1.7404	54.385	53.636	55.376	-0.1894					135	33	6	0	0	0	0.74191	2	21013	21013;21251		0.08335	0.08335	1	1288800000			25045	18180	15978	16064	24079;24080	24079					0.1820496672507943
PRRPQSRRKRR	11	Unmodified	_PRRPQSRRKRR_					0	0	0		SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	498.31005859375	3	498.310052	1491.90833	0.55031	0.00027423	-0.046837	-2.3339E-05	0.50347	0.00025089	498.30992830133056	54.8	2.3964	54.477	52.838	55.234	-0.32349					126	45	5	0	0	0	0.74191	2	20378	20378;20607		0.08335	0.08335	1	104300000			25046	18180	15978	16064	24081;24082	24081					0.1820496672507943
PRRPQSRRKRR	11	Unmodified	_PRRPQSRRKRR_					0	0	0		SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	498.310052	1491.90833	0.3823	0.0001905	0.12	5.9797E-05	0.5023	0.0002503	498.3100651101653	54.574	1.7404	54.385	53.636	55.376	-0.1894	-0.044633	0.00016897	NaN	0.08335	135	33	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1288800000			25047	18180	15978	16064							0.1820496672507943
PRRPRKPKTLN	11	Unmodified	_PRRPRKPKTLN_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MSMS	HCT116MG_D190212_S1	1	681.7119750976562	2	681.925669	1361.83679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.607	1	38.607	38.107	39.107	0								0	0	0	0.9598	1	14459	14459		1.1933	0	1				25048	1613	15979	16065	24083	24083					0.170340342478994
PRRPTQSFVK	10	Unmodified	_PRRPTQSFVK_					0	0	0		ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	MSMS	HCT116MG_D190212_S3	3	608.3489990234375	2	608.351471	1214.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.309	1	38.008	37.508	38.508	-0.30137								0	0	0	0.95089	1	14187	14187		4.5289	1.5336	1				25049	6579	15980	16066	24084	24084					0.08963303274185819
PRRRKRFKLLF	11	Unmodified	_PRRRKRFKLLF_					0	0	0			REV__sp|Q7M6G6|US34A_HCMVAUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainAD169)OX=10360GN=US34APE=3SV=1	REV__sp|Q7M6G6|US34A_HCMVAUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainAD169)OX=10360GN=US34APE=3SV=1	MSMS	HCT116MG_D190212_S1	1	758.9920043945312	2	758.988604	1515.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.869	1	46.869	46.369	47.369	0								0	0	0	0.96141	1	17794	17794		0.35063	0	1		+		25050	17583	15981	16067	24085	24085					0.22531165823966148
PRRRLHWVPL	10	Unmodified	_PRRRLHWVPL_					0	0	0		ENST00000231706.5_1_3:170244829-170303735:-|nuORF	ENST00000231706.5_1_3:170244829-170303735:-|nuORF	ENST00000231706.5_1_3:170244829-170303735:-|nuORF	MSMS	HCT116MG_D190212_S4	4	665.4072875976562	2	665.404373	1328.79419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.644	1	42.269	41.769	42.769	-0.37509								0	0	0	0.96291	1	15681	15681		1.8442	0.36234	1				25051	6767	15982	16068	24086	24086					0.14294683910316053
PRRRRRRMRRR	11	Unmodified	_PRRRRRRMRRR_					0	0	0			REV__nc|ENSG00000182872|P0DW28|RBM10	REV__nc|ENSG00000182872|P0DW28|RBM10	MSMS	HCT116MG_D190212_S1	1	826.3696899414062	2	826.514183	1651.01381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.881	1	19.881	19.381	20.381	0								0	0	0	0.96208	1	6919	6919		0	0	1		+		25052	17240	15983	16069	24087	24087					0.21434604369687804
PRSPRIRKRF	10	Unmodified	_PRSPRIRKRF_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MSMS	HCT116MG_D190212_S1	1	438.2730407714844	3	438.273945	1311.80001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.027	1	56.027	55.527	56.527	0								0	0	0	0.96337	1	21530	21530		1.7423	0	1				25053	5797	15984	16070	24088	24088					0.15657782421953925
PRVPPGPGRR	10	Unmodified	_PRVPPGPGRR_					0	0	0		ENST00000597582.1_1_19:58880485-58881257:-|nuORF;ENST00000427624.2_1_19:58880485-58892377:-|nuORF	ENST00000597582.1_1_19:58880485-58881257:-|nuORF	ENST00000597582.1_1_19:58880485-58881257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	544.8250122070312	2	544.825424	1087.63629	0.50068	0.00027278	-0.76632	-0.00041751	-0.26564	-0.00014473	544.8248374384925	52.099	0.67817	52.099	51.756	52.434	0					35	12	5	0	0	0	0.83158	1	19904	19904		9.3831	0.78985	1	880500000			25054	7826	15985	16071	24089	24089					0.09598184651076735
PRWERWRWPWC	11	Unmodified	_PRWERWRWPWC_					0	0	0			REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MSMS	HCT116MG_D190212_S1	1	829.4052734375	2	829.401504	1656.78845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.469	1	23.469	22.969	23.969	0								0	0	0	0.9619	1	8359	8359		0	0	1		+		25055	16675	15986	16072	24090	24090					-0.013667826636719838
PRWIRMRRILY	11	Unmodified	_PRWIRMRRILY_					0	0	0		ENST00000515834.1_1_5:180651698-180652007:+|nuORF	ENST00000515834.1_1_5:180651698-180652007:+|nuORF	ENST00000515834.1_1_5:180651698-180652007:+|nuORF	MSMS	HCT116MG_D190212_S4	4	780.46044921875	2	780.458822	1558.90309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.405	1	50.046	49.546	50.546	-0.35878								0	0	0	0.96208	1	18726	18726		0	0	1				25056	8539	15987	16073	24091	24091					0.14599526818301456
PRWRRRWFVLK	11	Unmodified	_PRWRRRWFVLK_					0	0	0		CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant;CNKSR1|p.P512Hfs*58|2|0.35|ENSG00000142675|chr1:26188287-26188287|C/-|frameshift_variant;CNKSR1|p.H694Tfs*16|1|0.42|ENSG00000142675|chr1:26189460-26189460|C/-|frameshift_variant;ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1	CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	CNKSR1|p.P513Tfs*9|2|0.38|ENSG00000142675|chr1:26188286-26188287|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	800.4791259765625	2	800.478403	1598.94225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.306	1	39.306	38.806	39.806	0								0	0	0	0.96208	1	14741	14741		0	0	1				25057	491	15988	16074	24092	24092					0.16673995164137523
PSAAGPSAPV	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))PSAAGPSAPV_					1	0	0			REV__ENST00000547725.1_1_12:78362333-78400327:+|nuORF	REV__ENST00000547725.1_1_12:78362333-78400327:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	895.4515380859375	1	895.451973	894.444697	0.67167	0.00060145	0.22295	0.00019964	0.89462	0.00080109	895.4518862081829	34.85	0.46137	34.464	34.236	34.698	-0.38606					13	8	2	0	0	0	0.052604	1	12729	12729		85.272	10.343	1	4580100	+		25058	16410	15989	16075	24093	24093					-0.0067478089058568
PSAAKALP	8	Unmodified	_PSAAKALP_					0	0	0			REV__ENSG00000206432|ENST00000383490|TMEM200C	REV__ENSG00000206432|ENST00000383490|TMEM200C	MSMS	HCT116MG_D190212_S4	4	377.7253112792969	2	377.726521	753.438489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.343	1	34.957	34.457	35.457	-0.38606								0	0	0	0.8837	1	12941	12941		5.7604	0	1		+		25059	14243	15990	16076	24094	24094					0.05190745668551244
PSAEKGPPSQ	10	Unmodified	_PSAEKGPPSQ_					0	0	0			REV__ENST00000543164.5_1_12:6602816-6602912:-|nuORF	REV__ENST00000543164.5_1_12:6602816-6602912:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	499.287353515625	2	499.251089	996.487624	0.42322	0.00021129	-0.82408	-0.00041142	-0.40086	-0.00020013	499.2504540014682	19.8	0.25025	19.606	19.486	19.736	-0.19367					6	4	2	0	0	0	0.27616	1	6784	6784		14.405	0	1	1745100	+		25060	16383	15991	16077	24095	24095					-0.010760108331396623
PSANNKGFIG	10	Unmodified	_PSANNKGFIG_					0	0	0			REV__nc|ENSG00000100926|O15321-2|TM9SF1	REV__nc|ENSG00000100926|O15321-2|TM9SF1	MULTI-MSMS	HCT116MG_D190212_S4	4	502.7616882324219	2	502.761623	1003.50869	0.34279	0.00017234	-0.013014	-6.5427E-06	0.32978	0.0001658	502.7616566622793	21.566	0.98652	21.348	20.751	21.737	-0.21832					29	18	2	0	0	0	0.65652	1	7374	7374		24.021	4.7636	1	3254700	+		25061	11108	15992	16078	24096	24096					0.007079992663761914
PSAPAPSGA	9	Unmodified	_PSAPAPSGA_					0	0	0			REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	754.3735961914062	1	754.372995	753.365718	0.44086	0.00033257	0.23973	0.00018085	0.68059	0.00051342	754.3732785209481	23.89	0.93738	23.829	23.582	24.519	-0.061447					25	17	3	0	0	0	0.050578	1	8438	8438		74.423	17.881	1	12010000	+		25062	15966	15993	16079	24097	24097					-0.020830081248618626
PSAPAPSGA	9	Unmodified	_PSAPAPSGA_					0	0	0			REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	754.37353515625	1	754.372995	753.365718	1.0172	0.00076732	-0.24477	-0.00018465	0.7724	0.00058268	754.3728655671572	25.052	0.7801	24.772	24.486	25.266	-0.27958					21	14	2	0	0	0	0.050578	2	8905	8905;9041		74.423	13.065	1	5297300	+		25063	15966	15993	16079	24098;24099	24098					-0.020830081248618626
PSAPAPSGA	9	Unmodified	_PSAPAPSGA_					0	0	0			REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	REV__ENST00000482645.1_1_2:3383573-3392513:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	754.372995	753.365718	1.0172	0.00076732	-0.24477	-0.00018465	0.7724	0.00058268	754.3728655671572	25.052	0.7801	24.772	24.486	25.266	-0.27958	-0.04645	-0.00023642	NaN	74.423	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5297300	+		25064	15966	15993	16079							-0.020830081248618626
PSARLLKHVVR	11	Unmodified	_PSARLLKHVVR_					0	0	0		ENST00000473626.1_1_2:219457053-219457431:+|nuORF;nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	MSMS	HCT116MG_D190212_S1	1	638.4030151367188	2	638.404038	1274.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.188	1	60.188	59.688	60.688	0								0	0	0	0.95731	1	23196	23196		2.4985	1.169	1				25065	3868	15994	16080	24100	24100					0.16711844470569304
PSARLLKHVVR	11	Unmodified	_PSARLLKHVVR_					0	0	0		ENST00000473626.1_1_2:219457053-219457431:+|nuORF;nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	ENST00000473626.1_1_2:219457053-219457431:+|nuORF	MSMS	HCT116MG_D190212_S4	4	638.4029541015625	2	638.404038	1274.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.008	1	59.737	59.237	60.237	-0.27156								0	0	0	0.95772	1	22598	22598		2.2828	0.95324	1				25066	3868	15994	16080	24101	24101					0.16711844470569304
PSATHTLTEPH	11	Unmodified	_PSATHTLTEPH_					0	0	0			REV__ENSG00000064999|ENST00000360359|ANKS1A	REV__ENSG00000064999|ENST00000360359|ANKS1A	MULTI-MSMS	HCT116MG_D190212_S2	2	595.7938842773438	2	595.793652	1189.57275	0.55636	0.00033148	-0.18485	-0.00011013	0.37151	0.00022134	595.7933556634973	18.084	0.4177	17.728	17.493	17.91	-0.35647					11	7	2	0	0	0	0.71271	1	6218	6218		17.113	8.9574	1	8640800	+		25067	10693	15995	16081	24102	24102					-0.01445265367351567
PSATHTLTEPH	11	Unmodified	_PSATHTLTEPH_					0	0	0			REV__ENSG00000064999|ENST00000360359|ANKS1A	REV__ENSG00000064999|ENST00000360359|ANKS1A	MULTI-MSMS	HCT116MG_D190212_S2	2	595.7938232421875	2	595.793652	1189.57275	0.2733	0.00016283	0.24565	0.00014635	0.51895	0.00030919	595.79354579875	18.762	0.62527	18.399	18.008	18.634	-0.36325					19	11	2	0	0	0	0.71532	1	6466	6466		16.149	3.1066	1	15670000	+		25068	10693	15995	16081	24103	24103					-0.01445265367351567
PSATHTLTEPH	11	Unmodified	_PSATHTLTEPH_					0	0	0			REV__ENSG00000064999|ENST00000360359|ANKS1A	REV__ENSG00000064999|ENST00000360359|ANKS1A	MULTI-MSMS	HCT116MG_D190212_S4	4	595.793701171875	2	595.793652	1189.57275	0.88129	0.00052507	0.33665	0.00020057	1.2179	0.00072564	595.793409202779	18.335	0.8294	18.155	17.682	18.511	-0.18052					45	15	4	0	0	0	0.62391	1	6079	6079		32.786	2.0822	1	13070000	+		25069	10693	15995	16081	24104	24104					-0.01445265367351567
PSDLTVGQFY	10	Unmodified	_PSDLTVGQFY_					0	0	0		ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000170296|ENST00000302386|GABARAP;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000139112|ENST00000266458|GABARAPL1	ENSG00000139112|ENST00000266458|GABARAPL1	MULTI-MSMS	HCT116MG_D190212_S2	2	1126.5416259765625	1	1126.54152	1125.53424	0.483	0.00054412	0.25862	0.00029134	0.74162	0.00083547	1126.541270770319	50.246	0.2554	50.074	49.883	50.138	-0.1719					10	4	3	0	0	0	0.023158	1	19264	19264		114.65	55.97	1	37877000			25070	3598	15996	16082	24105	24105					-0.023505710018298487
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MSMS	HCT116MG_D190212_S1	1	385.192626953125	3	385.192734	1152.55637	-0.13001	-5.008E-05	-0.094692	-3.6475E-05	-0.2247	-8.6554E-05	385.19262595262086	21.822	0.31275	21.822	21.646	21.959	0					13	5	4	0	0	0	0.012168	1	7699	7699		86.332	62.542	1	45532000			25071	1369	15997	16083	24106	24106					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MSMS	HCT116MG_D190212_S1	1	577.2855834960938	2	577.285463	1152.55637	0.45075	0.00026021	-0.44665	-0.00025784	0.004103	2.3686E-06	577.2853063132312	21.828	0.36487	21.828	21.646	22.011	0					17	6	4	0	0	0	0.0041644	1	7700	7700		148.27	94.435	1	42415000			25072	1369	15997	16083	24107	24107					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MSMS	HCT116MG_D190212_S2	2	385.1927795410156	3	385.192734	1152.55637	0.1294	4.9843E-05	0.0059605	2.2959E-06	0.13536	5.2139E-05	385.19271143447014	22.358	0.46683	21.973	21.739	22.206	-0.3852					25	8	5	0	0	0	0.0062667	1	7900	7900		103.82	81.049	1	201860000			25073	1369	15997	16083	24108	24108					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MSMS	HCT116MG_D190212_S2	2	1153.5634765625	1	1153.56365	1152.55637	0.64975	0.00074953	-0.14172	-0.00016348	0.50803	0.00058605	1153.563635466671	22.358	0.20736	21.973	21.843	22.051	-0.3852					5	3	2	0	0	0	0.0019609	1	7931	7931		187.3	127.22	1	12554000			25074	1369	15997	16083	24109	24109					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MSMS	HCT116MG_D190212_S2	2	577.2860107421875	2	577.285463	1152.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.321	1	21.936	21.436	22.436	-0.3852								0	0	0	4.4445E-08	1	7901	7901		160.69	100.62	1				25075	1369	15997	16083	24110	24110					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MSMS	HCT116MG_D190212_S3	3	577.7854614257812	2	577.285463	1152.55637	0.44755	0.00025836	-1.3155	-0.00075943	-0.86797	-0.00050107	577.2855057805742	21.705	0.89293	21.723	21.271	22.164	0.018446					52	16	5	0	0	0	0.15273	1	7535	7535		47.749	18.667	1	52525000			25076	1369	15997	16083	24111	24111					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MSMS	HCT116MG_D190212_S3	3	385.1927185058594	3	385.192734	1152.55637	-0.06746	-2.5985E-05	0.068675	2.6453E-05	0.0012155	4.6819E-07	385.1927092245128	21.703	0.52429	21.721	21.535	22.06	0.018446					24	9	4	0	0	0	0.016701	1	7577	7577		80.676	56.886	1	69952000			25077	1369	15997	16083	24112	24112					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MSMS	HCT116MG_D190212_S4	4	385.52734375	3	385.192734	1152.55637	0.079232	3.052E-05	0.0086646	3.3376E-06	0.087897	3.3857E-05	385.19265578279914	22.034	0.31164	21.806	21.676	21.988	-0.22777					12	5	3	0	0	0	0.020181	2	7647	7647;7664		76.825	61.868	1	18843000			25078	1369	15997	16083	24113;24114	24113					-0.013803465334149223
PSDPRYHEVHY	11	Unmodified	_PSDPRYHEVHY_					0	0	0		nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	MULTI-MSMS	HCT116MG_D190212_S1	1	467.2182312011719	3	467.217831	1398.63166	0.15423	7.206E-05	0.37897	0.00017706	0.5332	0.00024912	467.21819270195965	23.497	0.20873	23.497	23.366	23.575	0					6	3	2	0	0	0	0.69168	1	8396	8396		16.137	7.3854	1	7282700			25079	3070	15998	16084	24115	24115					-0.05170789073008564
PSDPRYHEVHY	11	Unmodified	_PSDPRYHEVHY_					0	0	0		nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	MULTI-MSMS	HCT116MG_D190212_S2	2	467.2174377441406	3	467.217831	1398.63166	0.43415	0.00020284	-0.64181	-0.00029987	-0.20766	-9.7025E-05	467.21733998532005	24.042	0.20697	23.659	23.56	23.767	-0.38324					7	3	3	0	0	0	0.46185	1	8618	8618		34.79	23.725	1	11443000			25080	3070	15998	16084	24116	24116					-0.05170789073008564
PSDPRYHEVHY	11	Unmodified	_PSDPRYHEVHY_					0	0	0		nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	nc|ENSG00000130305|Q96P11-5|NSUN5	MSMS	HCT116MG_D190212_S2	2	700.3228759765625	2	700.323108	1398.63166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.099	1	23.717	23.217	24.217	-0.3816								0	0	0	0.15884	1	8620	8620		75.571	64.747	1				25081	3070	15998	16084	24117	24117					-0.05170789073008564
PSDPSAPEA	9	Unmodified	_PSDPSAPEA_					0	0	0			REV__nc|ENSG00000173153|P11474-2|ESRRA	REV__nc|ENSG00000173153|P11474-2|ESRRA	MULTI-MSMS	HCT116MG_D190212_S3	3	870.3845825195312	1	870.383953	869.376677	0.59507	0.00051794	-0.068461	-5.9587E-05	0.5266	0.00045835	870.3839893593082	34.711	0.36349	34.414	34.233	34.596	-0.29707					9	6	2	0	0	0	0.19218	1	12818	12818		42.095	6.0504	1	4433400	+		25082	13418	15999	16085	24118	24118					-0.06323650541241932
PSDQPTGPQAR	11	Unmodified	_PSDQPTGPQAR_					0	0	0			REV__FOXN1|p.P583Lfs*5|1|0.16|ENSG00000109101|chr17:28537232-28537232|C/-|frameshift_variant	REV__FOXN1|p.P583Lfs*5|1|0.16|ENSG00000109101|chr17:28537232-28537232|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	577.7857666015625	2	577.283451	1152.55235	0.37313	0.0002154	1.3624	0.00078649	1.7355	0.0010019	577.7850624522355	22.045	0.9344	21.817	21.313	22.247	-0.22777					48	17	4	0	0	0	0.68267	1	7663	7663		26.268	5.8536	1	27369000	+		25083	16835	16000	16086	24119	24119					-0.01782436027156109
PSDVREDSNL	10	Unmodified	_PSDVREDSNL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	HCT116MG_D190212_S1	1	565.7675170898438	2	566.267467	1130.52038	0.45591	0.00025817	2.492	0.0014111	2.9479	0.0016693	566.2688606449657	30.581	0.20807	30.581	30.399	30.607	0					5	3	2	0	0	0	0.30788	1	11231	11231		13.042	0	1	3257700			25084	4181	16001	16087	24120	24120					-0.03965848500956781
PSEDVELRELQ	11	Unmodified	_PSEDVELRELQ_					0	0	0		sp|P16823|TEG7_HCMVATegumentproteinUL51homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL71PE=1SV=2;sp|F5HEA3|TEG7_HCMVMTegumentproteinUL51homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL71PE=3SV=1	sp|P16823|TEG7_HCMVATegumentproteinUL51homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL71PE=1SV=2	sp|P16823|TEG7_HCMVATegumentproteinUL51homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL71PE=1SV=2	MSMS	HCT116MG_D190212_S1	1	658.0136108398438	2	657.830431	1313.64631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.997	1	25.997	25.497	26.497	0								0	0	0	0.92235	1	9375	9375		17.113	4.0704	1				25085	18200	16002	16088	24121	24121					0.002032382844845415
PSESGMWAS	9	Unmodified	_PSESGMWAS_					0	0	0			REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	MSMS	HCT116MG_D190212_S4	4	476.1986083984375	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.911	1	38.53	38.03	39.03	-0.38163								0	0	0	0.76913	1	14278	14278		3.9444	1.0552	1		+		25086	13148	16003	16089	24122	24122					-0.09679304039025283
PSETYKTNNPE	11	Unmodified	_PSETYKTNNPE_					0	0	0		tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1	tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1	tr|U7SIY5|U7SIY5_FUSNULipoproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02276PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	640.794921875	2	640.293682	1278.57281	0.42164	0.00026998	0.23075	0.00014775	0.6524	0.00041773	640.2939217474683	30.279	0.61408	29.922	29.389	30.003	-0.3571					22	11	3	0	0	0	0.34819	1	10889	10889		13.615	0	1	5312300			25087	18308	16004	16090	24123	24123					-0.05533310157966298
PSFETDDRR	9	Unmodified	_PSFETDDRR_					0	0	0			REV__ENST00000324225.8_1_11:117067630-117067777:+|nuORF	REV__ENST00000324225.8_1_11:117067630-117067777:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	561.270263671875	2	561.762352	1121.51015	0.24125	0.00013552	-0.53708	-0.00030171	-0.29583	-0.00016619	561.7620180395946	21.832	0.62299	21.613	21.218	21.841	-0.21832					14	11	2	0	0	0	0.23301	1	7442	7442		15.847	1.9411	1	1460500	+		25088	14896	16005	16091	24124	24124					-0.04574411435510228
PSFGQKSD	8	Unmodified	_PSFGQKSD_					0	0	0			REV__ENST00000276440.11_1_8:25220627-25222171:+|nuORF	REV__ENST00000276440.11_1_8:25220627-25222171:+|nuORF	MSMS	HCT116MG_D190212_S3	3	433.2064208984375	2	433.20615	864.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.158	1	56.879	56.379	57.379	-0.27913								0	0	0	0.8837	1	21715	21715		9.3474	0	1		+		25089	14709	16006	16092	24125	24125					-0.039876404417100275
PSFRFSRRP	9	Unmodified	_PSFRFSRRP_					0	0	0		KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant;ENSG00000089558|ENST00000264661|KCNH4	KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant	KCNH4|p.Y982Tfs*24|1|0.16|ENSG00000089558|chr17:42160151-42160151|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	383.88043212890625	3	383.880713	1148.62031	-0.20253	-7.7749E-05	0.093671	3.5959E-05	-0.10886	-4.179E-05	383.8806718929617	9.9828	0.49797	9.7181	9.4613	9.9593	-0.26472					55	34	2	0	0	0	0.73263	1	3073	3073		2.9952	0	1	1085800			25090	1528	16007	16093	24126	24126					0.05194478414182413
PSGADSPPP	9	Unmodified	_PSGADSPPP_					0	0	0			REV__ENST00000469356.3_1_17:17720899-17721766:-|nuORF	REV__ENST00000469356.3_1_17:17720899-17721766:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	824.3790283203125	1	824.378474	823.371197	0.82106	0.00067686	0.0030531	2.5169E-06	0.82411	0.00067938	824.3783215268256	20.408	2.088	20.029	19.657	21.745	-0.37949					63	39	2	0	0	0	0.0066639	1	7086	7086		123.1	10.503	1	21983000	+		25091	10774	16008	16094	24127	24127					-0.04755329333045211
PSGADSPPP	9	Unmodified	_PSGADSPPP_					0	0	0			REV__ENST00000469356.3_1_17:17720899-17721766:-|nuORF	REV__ENST00000469356.3_1_17:17720899-17721766:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	824.378474	823.371197	0.82106	0.00067686	0.0030531	2.5169E-06	0.82411	0.00067938	824.3783215268256	20.408	2.088	20.029	19.657	21.745	-0.37949	-0.057115	4.1036E-05	NaN	123.1	63	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21983000	+		25092	10774	16008	16094							-0.04755329333045211
PSGDGQPALDP	11	Unmodified	_PSGDGQPALDP_					0	0	0		PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant;PTBP2|p.P452Sfs*10|1|0.17|ENSG00000117569|chr1:96812888-96812889|-/T|frameshift_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;nc|ENSG00000117569|Q9UKA9-5|PTBP2;nc|ENSG00000117569|Q9UKA9-6|PTBP2;ENST00000476419.5_1_1:97187405-97272445:+|nuORF	PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	PTBP2|p.N446Ifs*21|1|0.27|ENSG00000117569|chr1:96812873-96812873|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	527.2462158203125	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.649	1	29.3	28.8	29.8	-0.34921								0	0	0	0.92983	1	10716	10716		16.149	4.5088	1				25093	9789	16009	16095	24128	24128					-0.04668618558389426
PSGEFCLSL	9	Unmodified	_PSGEFCLSL_					0	0	0			REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF	REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	476.22454833984375	2	476.725861	951.437169	0.23068	0.00010997	0.93715	0.00044676	1.1678	0.00055673	476.7263625375343	20.967	0.31226	20.585	20.39	20.703	-0.38288					9	5	2	0	0	0	0.22781	1	7338	7338		11.64	11.64	1	7885000	+		25094	10204	16010	16096	24129	24129					-0.040492564824944566
PSGFEQQK	8	Unmodified	_PSGFEQQK_					0	0	0			REV__ENST00000465708.5_1_9:4285945-4286425:-|nuORF	REV__ENST00000465708.5_1_9:4285945-4286425:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	460.7271728515625	2	460.727249	919.439946	0.06252	2.8805E-05	0.20981	9.6667E-05	0.27233	0.00012547	460.7272335504414	19.378	0.72785	19.191	18.713	19.441	-0.18674					23	13	2	0	0	0	0.73076	1	6512	6512		19.439	1.304	1	8526200	+		25095	11319	16011	16097	24130	24130					-0.022996650333311663
PSGFEQQKP	9	Unmodified	_PSGFEQQKP_					0	0	0			REV__ENST00000465708.5_1_9:4285945-4286425:-|nuORF	REV__ENST00000465708.5_1_9:4285945-4286425:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	509.25433349609375	2	509.253631	1016.49271	0.11451	5.8315E-05	0.60955	0.00031042	0.72406	0.00036873	509.254061028047	21.332	0.83986	21.35	20.855	21.694	0.018446					21	15	2	0	0	0	0.49914	1	7403	7403		16.942	0	1	4685700	+		25096	11319	16012	16098	24131	24131					-0.014877069705221402
PSGGAEPAPGT	11	Unmodified	_PSGGAEPAPGT_					0	0	0			REV__ENST00000246006.4_1_20:23066509-23066725:-|nuORF	REV__ENST00000246006.4_1_20:23066509-23066725:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	470.7218933105469	2	470.722164	939.429775	0.053305	2.5092E-05	-0.53749	-0.00025301	-0.48419	-0.00022792	470.7220735260288	20.905	0.67717	20.94	20.662	21.339	0.034473					14	12	2	0	0	0	0.39464	1	7246	7246		55.503	9.4818	1	5107500	+		25097	14572	16013	16099	24132	24132					-0.04236272758578252
PSGGAEPAPGT	11	Unmodified	_PSGGAEPAPGT_					0	0	0			REV__ENST00000246006.4_1_20:23066509-23066725:-|nuORF	REV__ENST00000246006.4_1_20:23066509-23066725:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	470.7222595214844	2	470.722164	939.429775	0.1995	9.3909E-05	0.16595	7.8115E-05	0.36545	0.00017202	470.72214131215543	21.012	0.41508	20.802	20.604	21.019	-0.20959					12	7	2	0	0	0	0.27854	1	7233	7233		66.457	10.28	1	3948900	+		25098	14572	16013	16099	24133	24133					-0.04236272758578252
PSGGAEPAPGT	11	Unmodified	_PSGGAEPAPGT_					0	0	0			REV__ENST00000246006.4_1_20:23066509-23066725:-|nuORF	REV__ENST00000246006.4_1_20:23066509-23066725:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	940.4378051757812	1	940.437051	939.429775	0.65337	0.00061446	-0.060506	-5.6902E-05	0.59287	0.00055755	940.436871168096	21.047	0.57106	20.837	20.656	21.227	-0.20959					14	10	2	0	0	0	0.036257	1	7235	7235		114.65	25.695	1	4367600	+		25099	14572	16013	16099	24134	24134					-0.04236272758578252
PSGGAEPAPGT	11	Unmodified	_PSGGAEPAPGT_					0	0	0			REV__ENST00000246006.4_1_20:23066509-23066725:-|nuORF	REV__ENST00000246006.4_1_20:23066509-23066725:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	470.722164	939.429775	0.1995	9.3909E-05	0.16595	7.8115E-05	0.36545	0.00017202	470.72214131215543	21.012	0.41508	20.802	20.604	21.019	-0.20959	-0.06858	0.00012714	NaN	66.457	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3948900	+		25100	14572	16013	16099							-0.04236272758578252
PSGGKRDH	8	Unmodified	_PSGGKRDH_					0	0	0		ENST00000303538.12_1_4:39929740-39979529:-|nuORF	ENST00000303538.12_1_4:39929740-39979529:-|nuORF	ENST00000303538.12_1_4:39929740-39979529:-|nuORF	MSMS	HCT116MG_D190212_S1	1	427.2181701660156	2	427.217383	852.420213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.523	1	26.523	26.023	27.023	0								0	0	0	0.8837	1	9587	9587		7.2892	1.5288	1				25101	7016	16014	16100	24135	24135					-0.011899962534357655
PSGHKEEPP	9	Unmodified	_PSGHKEEPP_					0	0	0			REV__ENST00000434837.7_1_6:37664606-37664897:-|nuORF	REV__ENST00000434837.7_1_6:37664606-37664897:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	489.23828125	2	489.237981	976.461409	-0.039327	-1.924E-05	0.13976	6.8378E-05	0.10044	4.9138E-05	489.2379989665636	19.62	0.61414	19.426	19.018	19.632	-0.19367					18	11	2	0	0	0	0.22203	1	6503	6503		7.9102	0	1	2246800	+		25102	15609	16015	16101	24136	24136					-0.027762800046275515
PSGPDGPGP	9	Unmodified	_PSGPDGPGP_					0	0	0			REV__ENST00000328557.4_1_3:196388151-196388211:+|nuORF	REV__ENST00000328557.4_1_3:196388151-196388211:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	780.35302734375	1	780.352259	779.344983	0.85938	0.00067062	0.049335	3.8499E-05	0.90871	0.00070912	780.3521794453936	29.158	3.8257	28.817	26.194	30.02	-0.34059					106	73	2	0	0	0	0.2682	1	10435	10435		34.102	1.797	1	7050900	+		25103	14915	16016	16102	24137	24137					-0.05351598504512367
PSGPERYQ	8	Unmodified	_PSGPERYQ_					0	0	0		ENSG00000167131|ENST00000417826|CCDC103;CCDC103|p.R175Qfs*69|1|0.07|ENSG00000167131|chr17:44902611-44902612|-/AAGT|frameshift_variant	ENSG00000167131|ENST00000417826|CCDC103	ENSG00000167131|ENST00000417826|CCDC103	MULTI-SECPEP	HCT116MG_D190212_S4	4	467.9139404296875	2	467.224874	932.435195	-0.0091766	-4.2875E-06	0.040139	1.8754E-05	0.030963	1.4467E-05	467.2247664026788	21.913	1.1424	21.694	20.958	22.101	-0.21832					32	21	2	0	0	0	0.24784	1	7319	7319		19.257	0	1	5347800			25104	342	16017	16103	24138	24138					-0.033725491761060766
PSGPNGLPG	9	Unmodified	_PSGPNGLPG_					0	0	0			REV__ENST00000333050.6_1_16:8889558-8889804:-|nuORF	REV__ENST00000333050.6_1_16:8889558-8889804:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	398.2030334472656	2	398.20341	794.392267	0.12017	4.7853E-05	-0.263	-0.00010473	-0.14283	-5.6875E-05	398.2031876020282	21.897	0.51901	21.679	21.322	21.841	-0.21832					11	9	2	0	0	0	0.43775	1	7576	7576		20.454	0	1	1724300	+		25105	14939	16018	16104	24139	24139					-0.013153192335266795
PSGQRQPDPP	10	Unmodified	_PSGQRQPDPP_					0	0	0		ENST00000366584.8_1_1:236686911-236687247:+|nuORF	ENST00000366584.8_1_1:236686911-236687247:+|nuORF	ENST00000366584.8_1_1:236686911-236687247:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	360.18048095703125	3	360.180717	1077.52032	-0.14934	-5.3791E-05	-0.11355	-4.0897E-05	-0.26289	-9.4688E-05	360.18062245565653	15.916	1.0404	16.001	15.717	16.757	0.085423					42	19	3	0	0	0	0.65652	1	5186	5186		15.739	4.9391	1	3870500			25106	7372	16019	16105	24140	24140					-0.01533803710299253
PSGVNVEGAEV	11	Unmodified	_PSGVNVEGAEV_					0	0	0		nc|ENSG00000090530|Q8IVL5-2|P3H2;ENSG00000090530|ENST00000319332|P3H2	nc|ENSG00000090530|Q8IVL5-2|P3H2	nc|ENSG00000090530|Q8IVL5-2|P3H2	MULTI-MSMS	HCT116MG_D190212_S1	1	529.2618408203125	2	529.261653	1056.50875	0.4414	0.00023362	0.12778	6.7627E-05	0.56918	0.00030124	529.2616711432329	24.647	0.31358	24.647	24.464	24.778	0					8	5	2	0	0	0	0.32604	1	8839	8839		61.602	6.0992	1	10992000			25107	1543	16020	16106	24141	24141					-0.017240455242927055
PSHGGKGAGRP	11	Unmodified	_PSHGGKGAGRP_					0	0	0			REV__ENST00000222330.7_1_19:42734825-42734915:-|nuORF	REV__ENST00000222330.7_1_19:42734825-42734915:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	510.7704162597656	2	510.770314	1019.52608	0.020145	1.0289E-05	0.35545	0.00018155	0.3756	0.00019184	510.7702226826186	17.985	0.3119	18.061	17.945	18.257	0.076334					9	5	2	0	0	0	0.7093	1	6117	6117		18.373	18.373	1	2595400	+		25108	14524	16021	16107	24142	24142					0.01709339592048309
PSIVGWTVK	9	Unmodified	_PSIVGWTVK_					0	0	0		APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	APOB|p.K4541Sfs*8|1|0.34|ENSG00000084674|chr2:21001800-21001800|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	493.7875061035156	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.294	1	45.922	45.422	46.422	-0.37206								0	0	0	0.003374	1	17090	17090		121.53	45.773	1				25109	161	16022	16108	24143	24143					0.06630948311226348
PSIVTLRYLQY	11	Unmodified	_PSIVTLRYLQY_					0	0	0			REV__ENSG00000214029|ENST00000537226|ZNF891	REV__ENSG00000214029|ENST00000537226|ZNF891	MSMS	HCT116MG_D190212_S3	3	676.8828735351562	2	676.88227	1351.74999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.576	1	40.275	39.775	40.775	-0.30161								0	0	0	0.93552	1	15068	15068		13.906	2.4113	1		+		25110	14262	16023	16109	24144	24144					0.08818190182819308
PSKKRKKKKKK	11	Unmodified	_PSKKRKKKKKK_					0	0	0			REV__ENST00000392686.6_1_3:178977460-178977592:-|nuORF	REV__ENST00000392686.6_1_3:178977460-178977592:-|nuORF	MSMS	HCT116MG_D190212_S3	3	692.48583984375	2	692.485363	1382.95617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.456	1	59.198	58.698	59.698	-0.25832								0	0	0	0.96208	1	22642	22642		0	0	1		+		25111	15314	16024	16110	24145	24145					0.2800122787257351
PSLPDLHRV	9	Unmodified	_PSLPDLHRV_					0	0	0		ENSG00000117400|ENST00000372470|MPL	ENSG00000117400|ENST00000372470|MPL	ENSG00000117400|ENST00000372470|MPL	MULTI-MSMS	HCT116MG_D190212_S2	2	517.293212890625	2	517.293091	1032.57163	0.49126	0.00025412	1.0114	0.00052318	1.5026	0.0007773	517.2937636300345	31.589	0.25948	31.34	31.147	31.406	-0.24883					6	4	2	0	0	0	0.30117	1	11683	11683		30.637	0	1	8763600			25112	2575	16025	16111	24146	24146					0.05664565054416926
PSLSEMETERF	11	Unmodified	_PSLSEMETERF_					0	0	0		ENST00000361910.8_1_X:100870586-100870790:-|nuORF	ENST00000361910.8_1_X:100870586-100870790:-|nuORF	ENST00000361910.8_1_X:100870586-100870790:-|nuORF	MSMS	HCT116MG_D190212_S4	4	663.302978515625	2	663.305735	1324.59692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.07	1	29.713	29.213	30.213	-0.3571								0	0	0	0.92235	1	10886	10886		17.113	4.0704	1				25113	7368	16026	16112	24147	24147					-0.05239792995985226
PSLSPYALE	9	Unmodified	_PSLSPYALE_					0	0	0		OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant;OAS2|p.D514Gfs*41|1|0.05|ENSG00000111335|chr12:113006482-113006483|-/G|frameshift_variant;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant	OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	976.4988403320312	1	976.498589	975.491313	0.64491	0.00062976	0.66278	0.0006472	1.3077	0.001277	976.4990394852349	55.332	0.26127	55.041	54.927	55.188	-0.29181					6	4	2	0	0	0	0.24622	1	21029	21029		16.942	0	1	1856000			25114	2289	16027	16113	24148	24148					0.0025865894070875584
PSLSPYALE	9	Unmodified	_PSLSPYALE_					0	0	0		OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant;OAS2|p.D514Gfs*41|1|0.05|ENSG00000111335|chr12:113006482-113006483|-/G|frameshift_variant;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant	OAS2|p.N426Tfs*14|1|0.74|ENSG00000111335|chr12:113005025-113005025|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	976.498589	975.491313	0.65787	0.00064241	1.0573	0.0010325	1.7152	0.0016749	976.4997000530216	55.232	0.40616	55.044	54.816	55.222	-0.18797	0.0017682	5.6206E-05	NaN	16.942	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17030000			25115	2289	16027	16113							0.0025865894070875584
PSNGKKDWSEK	11	Unmodified	_PSNGKKDWSEK_					0	0	0		ENSG00000135355|ENST00000369352|GJA10	ENSG00000135355|ENST00000369352|GJA10	ENSG00000135355|ENST00000369352|GJA10	MULTI-SECPEP	HCT116MG_D190212_S4	4	637.7607421875	2	638.320034	1274.62551	0.38284	0.00024438	-0.02886	-1.8422E-05	0.35398	0.00022595	638.319781685594	19.03	0.4158	18.843	18.505	18.921	-0.18674					12	7	2	0	0	0	0.3621	1	6450	6450		14.405	0	1	1400600			25116	3343	16028	16114	24149	24149					-0.0008130730454922741
PSPAGAPGA	9	Unmodified	_PSPAGAPGA_					0	0	0		ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000109132|ENST00000226382|PHOX2B	MULTI-SECPEP	HCT116MG_D190212_S2	2	724.9547729492188	1	724.36243	723.355153	0.94221	0.0006825	0.29055	0.00021046	1.2328	0.00089296	724.3625742794865	21.319	0.25849	20.936	20.807	21.065	-0.38288					6	4	2	0	0	0	0.15971	1	7453	7453		21.747	1.293	1	5046100			25117	2196	16029	16115	24150	24150					-0.01758990779285341
PSPGAPKK	8	Unmodified	_PSPGAPKK_					0	0	0		ENST00000575094.5_1_12:9800878-9800986:+|nuORF	ENST00000575094.5_1_12:9800878-9800986:+|nuORF	ENST00000575094.5_1_12:9800878-9800986:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	390.8618469238281	2	391.231971	780.449388	0.016865	6.5982E-06	-0.2282	-8.928E-05	-0.21134	-8.2681E-05	391.2317566933985	26.515	0.20762	26.154	26.024	26.232	-0.36164					5	3	2	0	0	0	0.32291	1	9565	9565		7.2892	0	1	11475000			25118	8916	16030	16116	24151	24151					0.05038148042854118
PSPGPAQPGPR	11	Unmodified	_PSPGPAQPGPR_					0	0	0		nc|ENSG00000141858|Q6SPF0|SAMD1	nc|ENSG00000141858|Q6SPF0|SAMD1	nc|ENSG00000141858|Q6SPF0|SAMD1	MULTI-MSMS	HCT116MG_D190212_S4	4	531.2754516601562	2	530.780348	1059.54614	0.46463	0.00024662	-0.33348	-0.000177	0.13115	6.9614E-05	530.7800759529936	20.47	0.51981	20.269	19.885	20.404	-0.20133					23	9	3	0	0	0	0.73401	1	6880	6880		7.609	0	1	7624000			25119	9481	16031	16117	24152	24152					0.018750905319848243
PSPPGAID	8	Unmodified	_PSPPGAID_					0	0	0		ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	753.3790283203125	1	753.377746	752.370469	0.58432	0.00044022	-0.010256	-7.7267E-06	0.57407	0.00043249	753.3776295594395	42.303	0.46878	42	41.78	42.249	-0.30352					12	8	2	0	0	0	0.46267	1	15750	15750		44.407	1.439	1	7019000			25120	7606	16032	16118	24153	24153					-0.01562123982103003
PSPPGAID	8	Unmodified	_PSPPGAID_					0	0	0		ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	753.37841796875	1	753.377746	752.370469	0.85808	0.00064646	0.16075	0.0001211	1.0188	0.00076756	753.3777412104935	42.292	0.51833	41.916	41.735	42.254	-0.37565					16	9	2	0	0	0	0.46267	1	15539	15539		44.407	10.22	1	5796900			25121	7606	16032	16118	24154	24154					-0.01562123982103003
PSPPGAID	8	Unmodified	_PSPPGAID_					0	0	0		ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	753.377746	752.370469	0.94063	0.00070865	-0.19499	-0.0001469	0.74564	0.00056175	753.3775017481458	41.888	0.31276	41.888	41.706	42.019	0	-0.04689	-0.00016867	NaN	44.407	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13397000			25122	7606	16032	16118							-0.01562123982103003
PSPPGSPG	8	Unmodified	_PSPPGSPG_					0	0	0		ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	MULTI-SECPEP	HCT116MG_D190212_S4	4	695.1644287109375	1	695.335881	694.328604	0.73756	0.00051285	-0.4462	-0.00031026	0.29137	0.0002026	695.3355635725175	20.23	1.03	20.029	19.374	20.404	-0.20133					34	19	3	0	0	0	0.20735	1	6983	6983		44.407	0	1	6611700			25123	4244	16033	16119	24155	24155					-0.030786796706138375
PSPPPKKI	8	Unmodified	_PSPPPKKI_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MSMS	HCT116MG_D190212_S4	4	432.2706604003906	2	432.271096	862.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.073	1	24.794	24.294	25.294	-0.27958								0	0	0	0.8837	1	8867	8867		2.5775	0.27475	1		+		25124	13049	16034	16120	24156	24156					0.09087580628079195
PSPPTQVDDP	10	Unmodified	_PSPPTQVDDP_					0	0	0			REV__ENST00000436507.2_1_9:37885847-37886384:+|nuORF	REV__ENST00000436507.2_1_9:37885847-37886384:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.280029296875	2	526.748379	1051.4822	0.60025	0.00031618	0.46372	0.00024426	1.064	0.00056044	526.7487989308873	31.37	0.25862	31.121	30.94	31.198	-0.24883					7	4	2	0	0	0	0.3029	1	11526	11526		1.4819	0	1	10505000	+		25125	15626	16035	16121	24157	24157					-0.041477344156191975
PSPTDGSIGA	10	Unmodified	_PSPTDGSIGA_					0	0	0			REV__ENST00000376609.1_1_17:47923566-47924646:+|nuORF	REV__ENST00000376609.1_1_17:47923566-47924646:+|nuORF	MSMS	HCT116MG_D190212_S2	2	451.2169189453125	2	451.216714	900.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.981	1	19.606	19.106	20.106	-0.37503								0	0	0	0.16943	1	6959	6959		71.134	9.7761	1		+		25126	15227	16036	16122	24158	24158					-0.03531675132842338
PSQGHSGLITH	11	Unmodified	_PSQGHSGLITH_					0	0	0			REV__ENST00000464620.1_1_1:3388185-3390209:+|nuORF	REV__ENST00000464620.1_1_1:3388185-3390209:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.2891845703125	2	567.288537	1132.56252	0.61412	0.00034838	-0.12121	-6.8759E-05	0.49292	0.00027963	567.2884446138747	25.241	0.5721	24.961	24.59	25.162	-0.27958					16	10	2	0	0	0	0.60456	1	8928	8928		34.932	4.2955	1	2624400	+		25127	15808	16037	16123	24159	24159					0.0015417169809097686
PSRPHQIDSP	10	Unmodified	_PSRPHQIDSP_					0	0	0			REV__ENST00000379499.3_1_X:21675905-21676427:-|nuORF	REV__ENST00000379499.3_1_X:21675905-21676427:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	567.288818359375	2	567.288537	1132.56252	0.38521	0.00021853	0.06961	3.9489E-05	0.45482	0.00025802	567.2885471885367	24.451	1.1974	24.367	24.081	25.278	-0.083694					39	22	4	0	0	0	0.72678	1	9014	9014		18.146	2.2992	1	42416000	+		25128	15258	16038	16124	24160	24160					0.0015417169809097686
PSRQKQKKKK	10	Unmodified	_PSRQKQKKKK_					0	0	0			REV__ZNF148|p.R146Q|1|0.31|ENSG00000163848|chr3:125288125-125288125|C/T|missense_variant	REV__ZNF148|p.R146Q|1|0.31|ENSG00000163848|chr3:125288125-125288125|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	628.400634765625	2	628.401496	1254.78844	0.58312	0.00036643	-1.4297	-0.00089843	-0.84659	-0.000532	628.4003102845281	57.256	0.31206	57.077	56.947	57.259	-0.17904					8	5	2	0	0	0	0.88076	1	22141	22141		3.2813	0.28607	1	6937500	+		25129	18071	16039	16125	24161	24161					0.17123540607985888
PSRQKQKKKK	10	Unmodified	_PSRQKQKKKK_					0	0	0			REV__ZNF148|p.R146Q|1|0.31|ENSG00000163848|chr3:125288125-125288125|C/T|missense_variant	REV__ZNF148|p.R146Q|1|0.31|ENSG00000163848|chr3:125288125-125288125|C/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	628.401496	1254.78844	0.66876	0.00042025	-0.92539	-0.00058152	-0.25663	-0.00016127	628.9022139356072	56.711	0.20649	56.711	56.583	56.789	0	-0.18296	0.00040289	NaN	3.2813	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11353000	+		25130	18071	16039	16125							0.17123540607985888
PSRQKQKKKK	10	Unmodified	_PSRQKQKKKK_					0	0	0			REV__ZNF148|p.R146Q|1|0.31|ENSG00000163848|chr3:125288125-125288125|C/T|missense_variant	REV__ZNF148|p.R146Q|1|0.31|ENSG00000163848|chr3:125288125-125288125|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	628.401496	1254.78844	0.58312	0.00036643	-1.4297	-0.00089843	-0.84659	-0.000532	628.4003102845281	57.256	0.31206	57.077	56.947	57.259	-0.17904	0.18296	-0.00023094	NaN	3.2813	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6937500	+		25131	18071	16039	16125							0.17123540607985888
PSSAFKGG	8	Unmodified	_PSSAFKGG_					0	0	0			REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	750.378662109375	1	750.37808	749.370804	1.1645	0.00087378	-0.30886	-0.00023176	0.85559	0.00064202	750.3777430624825	31.836	0.56974	31.587	31.406	31.976	-0.24883					18	10	2	0	0	0	0.74206	1	11744	11744		18.135	2.3668	1	41862000	+		25132	14677	16040	16126	24162	24162					-0.013907042622236077
PSSAFKGG	8	Unmodified	_PSSAFKGG_					0	0	0			REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	750.37808	749.370804	0.83517	0.0006267	0.14363	0.00010777	0.9788	0.00073447	750.3781788525629	31.719	0.31285	31.719	31.544	31.857	0	-0.0002274	-2.7769E-05	NaN	18.135	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8924900	+		25133	14677	16040	16126							-0.013907042622236077
PSSAFKGG	8	Unmodified	_PSSAFKGG_					0	0	0			REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	750.37808	749.370804	1.1645	0.00087378	-0.30886	-0.00023176	0.85559	0.00064202	750.3777430624825	31.836	0.56974	31.587	31.406	31.976	-0.24883	-0.13253	-0.00036731	NaN	18.135	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41862000	+		25134	14677	16040	16126							-0.013907042622236077
PSSAFKGG	8	Unmodified	_PSSAFKGG_					0	0	0			REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	750.37808	749.370804	0.38813	0.00029125	0.37325	0.00028008	0.76138	0.00057132	750.3781956740886	32.027	0.57214	31.748	31.526	32.098	-0.27841	0.028737	0.00014453	NaN	18.135	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26703000	+		25135	14677	16040	16126							-0.013907042622236077
PSSAFKGG	8	Unmodified	_PSSAFKGG_					0	0	0			REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	750.37808	749.370804	0.737	0.00055303	0.087389	6.5575E-05	0.82439	0.0006186	750.37801365269	32.199	0.46706	31.823	31.642	32.109	-0.37529	0.10402	-6.9969E-05	NaN	18.135	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10799000	+		25136	14677	16040	16126							-0.013907042622236077
PSSARTKPP	9	Unmodified	_PSSARTKPP_					0	0	0			REV__ENST00000360803.8_1_10:1034081-1034213:+|nuORF	REV__ENST00000360803.8_1_10:1034081-1034213:+|nuORF	MSMS	HCT116MG_D190212_S1	1	470.76416015625	2	470.764166	939.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.989	1	21.989	21.489	22.489	0								0	0	0	0.30238	1	7763	7763		39.95	3.9055	1		+		25137	15085	16041	16127	24163	24163					0.04160303129003751
PSSHSFQWL	9	Unmodified	_PSSHSFQWL_					0	0	0		ZNF541|p.T630Pfs*22|1|0.28|ENSG00000118156|chr19:47544641-47544641|T/-|frameshift_variant;ZNF541|p.P998Qfs*46|1|0.22|ENSG00000118156|chr19:47538243-47538243|G/-|frameshift_variant;nc|ENSG00000118156|Q9H0D2-2|ZNF541;ZNF541|p.G1117Afs*52|1|0.13|ENSG00000118156|chr19:47531697-47531697|C/-|frameshift_variant;ENSG00000118156|ENST00000391901|ZNF541	ZNF541|p.T630Pfs*22|1|0.28|ENSG00000118156|chr19:47544641-47544641|T/-|frameshift_variant	ZNF541|p.T630Pfs*22|1|0.28|ENSG00000118156|chr19:47544641-47544641|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	544.767333984375	2	544.761623	1087.50869	0.84253	0.00045898	0.64341	0.0003505	1.4859	0.00080948	545.2634943756462	47.743	0.20709	47.61	47.48	47.687	-0.13281					5	3	2	0	0	0	0.59184	1	18168	18168		11.64	1.5664	1	6132500			25138	2598	16042	16128	24164	24164					-0.031560007336111084
PSSQARLEKEY	11	Unmodified	_PSSQARLEKEY_					0	0	0		NPC1|p.C799Lfs*7|1|0.36|ENSG00000141458|chr18:23541186-23541187|-/A|frameshift_variant;ENST00000540608.5_1_18:21119776-21166285:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1;NPC1|p.G993Efs*4|1|0.22|ENSG00000141458|chr18:23538605-23538605|C/-|frameshift_variant;NPC1|p.F1207Lfs*35|1|0.33|ENSG00000141458|chr18:23533488-23533488|A/-|frameshift_variant;ENSG00000141458|ENST00000269228|NPC1	NPC1|p.C799Lfs*7|1|0.36|ENSG00000141458|chr18:23541186-23541187|-/A|frameshift_variant	NPC1|p.C799Lfs*7|1|0.36|ENSG00000141458|chr18:23541186-23541187|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	654.3341064453125	2	654.333141	1306.65173	0.64349	0.00042106	1.6767	0.0010971	2.3202	0.0015182	654.3331035794305	23.432	1.0818	23.393	22.679	23.76	-0.039682					34	20	3	0	0	0	0.72218	1	8239	8239		13.615	0.5724	1	5483200			25139	3721	16043	16129	24165	24165					0.010669618669453484
PSSRWKRFY	9	Unmodified	_PSSRWKRFY_					0	0	0		ENSG00000108733|ENST00000225873|PEX12;PEX12|p.S275Nfs*19|1|0.04|ENSG00000108733|chr17:35576039-35576040|-/TACTGTT|frameshift_variant	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-MSMS	HCT116MG_D190212_S3	3	613.824951171875	2	613.825089	1225.63563	0.35166	0.00021586	-0.052519	-3.2237E-05	0.29914	0.00018362	614.326642313929	40.362	0.2082	40.06	39.955	40.163	-0.30161					5	3	2	0	0	0	0.64512	1	15010	15010		8.5933	8.5933	1	4617000			25140	2178	16044	16130	24166	24166					0.0318334521136876
PSSSARMEAL	10	Unmodified	_PSSSARMEAL_					0	0	0			REV__ENST00000417961.5_1_20:48504479-48504584:+|nuORF	REV__ENST00000417961.5_1_20:48504479-48504584:+|nuORF	MSMS	HCT116MG_D190212_S4	4	350.1749267578125	3	350.174574	1047.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.821	1	55.509	55.009	56.009	-0.312								0	0	0	0.95507	1	20912	20912		1.7423	0	1		+		25141	15492	16045	16131	24167	24167					-0.019956816764988616
PSSSAWPLSA	10	Unmodified	_PSSSAWPLSA_					0	0	0		nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C	nc|ENSG00000078687|Q9HCJ0-2|TNRC6C	nc|ENSG00000078687|Q9HCJ0-2|TNRC6C	MSMS	HCT116MG_D190212_S4	4	501.76483154296875	2	501.748182	1001.48181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.047	1	23.789	23.289	24.289	-0.25816								0	0	0	0.4096	1	8452	8452		52.268	12.319	1				25142	1371	16046	16132	24168	24168					-0.018871093448069587
PSTAAYNG	8	Unmodified	_PSTAAYNG_					0	0	0		ENST00000371021.4_1_10:99080834-99081359:+|nuORF	ENST00000371021.4_1_10:99080834-99081359:+|nuORF	ENST00000371021.4_1_10:99080834-99081359:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	780.3521118164062	1	780.352259	779.344983	0.75454	0.0005888	0.093543	7.2997E-05	0.84808	0.0006618	780.3522134980904	29.413	2.9255	29.187	27.167	30.093	-0.22611					87	55	2	0	0	0	0.53596	1	10326	10326		37.974	3.8716	1	5667000			25143	7436	16047	16133	24169	24169					-0.05351598504523736
PSTAWFGGF	9	Unmodified	_PSTAWFGGF_					0	0	0			REV__ENST00000412615.6_2_12:112590973-112591057:+|nuORF	REV__ENST00000412615.6_2_12:112590973-112591057:+|nuORF	MSMS	HCT116MG_D190212_S4	4	485.22698974609375	2	485.226885	968.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.274	1	30.903	30.403	31.403	-0.37026								0	0	0	0.76669	1	11343	11343		12.532	0.89125	1		+		25144	15451	16048	16134	24170	24170					-0.046264596823675674
PSTCCSDS	8	Unmodified	_PSTCCSDS_					0	0	0			REV__CXCR3|p.P165Rfs*4|1|0.56|ENSG00000186810|chrX:71616978-71616978|G/-|frameshift_variant	REV__CXCR3|p.P165Rfs*4|1|0.56|ENSG00000186810|chrX:71616978-71616978|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	799.2596435546875	1	799.259681	798.252404	0.71966	0.00057519	-0.57656	-0.00046082	0.1431	0.00011437	799.2590558104304	19.353	0.31213	19.353	19.183	19.495	0					9	5	2	0	0	0	0.8506	1	6708	6708		5.2307	0.47466	1	8360900	+		25145	10317	16049	16135	24171	24171					-0.15479187624578117
PSTCCSDS	8	Unmodified	_PSTCCSDS_					0	0	0			REV__CXCR3|p.P165Rfs*4|1|0.56|ENSG00000186810|chrX:71616978-71616978|G/-|frameshift_variant	REV__CXCR3|p.P165Rfs*4|1|0.56|ENSG00000186810|chrX:71616978-71616978|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	799.259033203125	1	799.259681	798.252404	0.74878	0.00059847	-0.78002	-0.00062344	-0.031243	-2.4971E-05	799.2589498814992	19.508	0.3126	19.568	19.386	19.698	0.05983					9	5	2	0	0	0	0.78216	1	6683	6683		13.508	3.3245	1	4479200	+		25146	10317	16049	16135	24172	24172					-0.15479187624578117
PSTDLQSNERW	11	Unmodified	_PSTDLQSNERW_					0	0	0			REV__ENST00000476344.1_1_1:149871204-149872023:+|nuORF	REV__ENST00000476344.1_1_1:149871204-149872023:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	667.1710815429688	2	666.812573	1331.61059	0.65486	0.00043667	0.24505	0.0001634	0.89992	0.00060008	666.8122625823812	20.721	1.2493	20.756	19.985	21.235	0.034473					35	23	3	0	0	0	0.36367	1	6921	6921		5.7319	0	1	5051100	+		25147	13595	16050	16136	24173	24173					-0.04194799172523744
PSTEMTLMTLP	11	Unmodified	_PSTEMTLMTLP_					0	0	0		ENST00000457926.5_1_16:90060298-90061235:+|nuORF	ENST00000457926.5_1_16:90060298-90061235:+|nuORF	ENST00000457926.5_1_16:90060298-90061235:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	612.2330322265625	2	610.7987	1219.58285	0.64668	0.00039499	-0.14301	-8.7349E-05	0.50367	0.00030764	610.7986930351334	17.903	1.7633	17.728	17.014	18.777	-0.17501					92	33	4	0	0	0	0.74191	1	6109	6109		5.7319	5.7319	1	11551000			25148	8035	16051	16137	24174	24174					-0.018161617485930037
PSTFILVKY	9	Unmodified	_PSTFILVKY_					0	0	0			REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	REV__TSC2|p.S1427Vfs*49|1|0.21|ENSG00000103197|chr16:2084499-2084499|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	534.3116455078125	2	534.310418	1066.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.795	1	35.653	35.153	36.153	-0.14245								0	0	0	0.76669	1	13365	13365		12.532	1.7076	1		+		25149	11183	16052	16138	24175	24175					0.07564388142532152
PSTPASGGHPA	11	Unmodified	_PSTPASGGHPA_					0	0	0		ENST00000324432.9_1_7:76134899-76135220:+|nuORF	ENST00000324432.9_1_7:76134899-76135220:+|nuORF	ENST00000324432.9_1_7:76134899-76135220:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	490.255859375	2	489.735606	977.456658	0.15017	7.3543E-05	1.6788	0.00082216	1.829	0.00089571	489.73617099504474	18.105	0.3131	17.749	17.545	17.858	-0.35647					6	5	2	0	0	0	0.33998	1	6168	6168		21.537	8.0291	1	1215300			25150	7124	16053	16139	24176	24176					-0.032971641473750424
PSTPERPGPNP	11	Unmodified	_PSTPERPGPNP_					0	0	0			REV__nc|ENSG00000167972|Q99758-2|ABCA3	REV__nc|ENSG00000167972|Q99758-2|ABCA3	MSMS	HCT116MG_D190212_S2	2	383.5288391113281	3	383.528005	1147.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.818	1	15.483	14.983	15.983	-0.33451								0	0	0	0.94755	1	5282	5282		3.8459	1.3474	1		+		25151	9818	16054	16140	24177	24177					-0.005692480217476259
PSTQAYCAAQQ	11	Unmodified	_PSTQAYCAAQQ_					0	0	0			REV__FUBP1|p.Y625C|1|0.14|ENSG00000162613|chr1:77949207-77949207|T/C|missense_variant	REV__FUBP1|p.Y625C|1|0.14|ENSG00000162613|chr1:77949207-77949207|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	584.2803955078125	2	584.258588	1166.50262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.306	1	20.104	19.604	20.604	-0.20133								0	0	0	0.93607	1	6943	6943		13.615	0.5724	1		+		25152	16841	16055	16141	24178	24178					-0.07396887027471166
PSTQDIYQRQN	11	Unmodified	_PSTQDIYQRQN_					0	0	0		CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	675.3264770507812	2	675.325847	1348.63714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.792	1	20.826	20.326	21.326	0.034473								0	0	0	0.93295	1	7211	7211		15.248	3.0737	1				25153	408	16056	16142	24179	24179					-0.023231102811905657
PSTRAAPP	8	Unmodified	_PSTRAAPP_					0	0	0		ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	ZNF469|p.R3634Efs*58|4|0.52|ENSG00000225614|chr16:88438444-88438444|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	398.71868896484375	2	398.719227	795.423902	0.12082	4.8173E-05	-0.15239	-6.0759E-05	-0.031566	-1.2586E-05	398.71893369863557	21.411	0.83082	21.192	20.855	21.685	-0.21832					20	15	2	0	0	0	0.55794	1	7492	7492		36.044	5.8194	1	1528500			25154	18730	16057	16143	24180	24180					0.0180067352041533
PSTRAPFTEIT	11	Unmodified	_PSTRAPFTEIT_					0	0	0		ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	MSMS	HCT116MG_D190212_S3	3	610.3185424804688	2	610.319502	1218.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.515	1	21.534	21.034	22.034	0.018446								0	0	0	0.94012	1	7501	7501		11.495	2.1116	1				25155	2103	16058	16144	24181	24181					0.023884783265430087
PSTSAGFGG	9	Unmodified	_PSTSAGFGG_					0	0	0		ENST00000492706.5_1_X:54953428-54957450:+|nuORF;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO;ENSG00000067445|ENST00000173898|TRO	ENST00000492706.5_1_X:54953428-54957450:+|nuORF	ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	780.353271484375	1	780.352259	779.344983	0.85938	0.00067062	0.049335	3.8499E-05	0.90871	0.00070912	780.3521794453936	29.158	3.8257	28.817	26.194	30.02	-0.34059					106	73	2	0	0	0	0.19218	2	10207	10207;10666		42.095	0	1	7050900			25156	1185	16059	16145	24182;24183	24182					-0.05351598504512367
PSTSPSTLLWY	11	Unmodified	_PSTSPSTLLWY_					0	0	0			REV__ENST00000313432.5_1_12:110787716-110787863:+|nuORF	REV__ENST00000313432.5_1_12:110787716-110787863:+|nuORF	MSMS	HCT116MG_D190212_S4	4	626.3148803710938	2	626.316428	1250.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.948	1	18.761	18.261	19.261	-0.18674								0	0	0	0.93717	1	6394	6394		13.042	0.80181	1		+		25157	14847	16060	16146	24184	24184					0.0030196009506653354
PSTTSWLSSGP	11	Unmodified	_PSTTSWLSSGP_					0	0	0		ENST00000461988.5_1_7:75615537-75615761:+|nuORF	ENST00000461988.5_1_7:75615537-75615761:+|nuORF	ENST00000461988.5_1_7:75615537-75615761:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	560.2697143554688	2	560.269478	1118.5244	0.018754	1.0507E-05	1.7812	0.00099794	1.7999	0.0010084	560.270122920664	23.18	0.31558	22.932	22.8	23.116	-0.24775					7	5	2	0	0	0	0.3453	1	8138	8138		5.2969	0	1	1830900			25158	8064	16061	16147	24185	24185					-0.030117590071995437
PSTVLGPSGP	10	Unmodified	_PSTVLGPSGP_					0	0	0			REV__ENSG00000028277|ENST00000692977|POU2F2	REV__ENSG00000028277|ENST00000692977|POU2F2	MSMS	HCT116MG_D190212_S4	4	456.2449951171875	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.6	1	44.227	43.727	44.727	-0.37326								0	0	0	0.86471	1	16437	16437		20.454	0	1		+		25159	10570	16062	16148	24186	24186					0.01717792143540464
PSTVMDTAMF	10	Unmodified	_PSTVMDTAMF_					0	0	0			REV__tr|U7T4X1|U7T4X1_FUSNUIon-translocatingoxidoreductasecomplexsubunitDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfDPE=3SV=1	REV__tr|U7T4X1|U7T4X1_FUSNUIon-translocatingoxidoreductasecomplexsubunitDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfDPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	549.7426147460938	2	550.24356	1098.47257	0.041674	2.2931E-05	0.48204	0.00026524	0.52371	0.00028817	550.2437120820526	30.132	0.20628	29.848	29.718	29.925	-0.28453					5	3	2	0	0	0	0.28496	1	11079	11079		13.906	8.6092	1	10140000	+		25160	17973	16063	16149	24187	24187					-0.07272962017009377
PSVGLPQQIHS	11	Unmodified	_PSVGLPQQIHS_					0	0	0		LTBP1|p.K599Qfs*19|2|0.38|ENSG00000049323|chr2:33217640-33217641|-/C|frameshift_variant;LTBP1|p.R1505Sfs*11|1|0.05|ENSG00000049323|chr2:33364330-33364331|-/TATTACTAAAGAA|frameshift_variant;ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1	LTBP1|p.K599Qfs*19|2|0.38|ENSG00000049323|chr2:33217640-33217641|-/C|frameshift_variant	LTBP1|p.K599Qfs*19|2|0.38|ENSG00000049323|chr2:33217640-33217641|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	581.814697265625	2	581.814387	1161.61422	0.5587	0.00032506	-0.02539	-1.4772E-05	0.53331	0.00031029	581.8143284571937	29.108	1.6154	28.886	27.9	29.515	-0.22196					93	30	4	0	0	0	0.60456	1	10532	10532		34.932	1.4872	1	136790000			25161	1042	16064	16150	24188	24188					0.0398791539200829
PSVGLPQQIHS	11	Unmodified	_PSVGLPQQIHS_					0	0	0		LTBP1|p.K599Qfs*19|2|0.38|ENSG00000049323|chr2:33217640-33217641|-/C|frameshift_variant;LTBP1|p.R1505Sfs*11|1|0.05|ENSG00000049323|chr2:33364330-33364331|-/TATTACTAAAGAA|frameshift_variant;ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1	LTBP1|p.K599Qfs*19|2|0.38|ENSG00000049323|chr2:33217640-33217641|-/C|frameshift_variant	LTBP1|p.K599Qfs*19|2|0.38|ENSG00000049323|chr2:33217640-33217641|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	581.814387	1161.61422	0.80607	0.00046899	-0.012688	-7.3822E-06	0.79339	0.0004616	581.8142898085645	28.727	1.1557	28.727	28.008	29.164	0	-0.086614	1.0755E-05	NaN	34.932	44	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25438000			25162	1042	16064	16150							0.0398791539200829
PSVIAIPP	8	Unmodified	_PSVIAIPP_					0	0	0			REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	MSMS	HCT116MG_D190212_S2	2	397.2444763183594	2	397.244547	792.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.757	1	32.546	32.046	33.046	-0.21135								0	0	0	0.8396	1	12131	12131		19.439	4.8573	1		+		25163	12365	16065	16151	24189	24189					0.07000202845415515
PSVKKESHP	9	Unmodified	_PSVKKESHP_					0	0	0		ENST00000474534.1_1_9:131798902-131809484:+|nuORF	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	504.77728271484375	2	504.777274	1007.53999	0.33269	0.00016793	0.05274	2.6622E-05	0.38543	0.00019455	504.77730204017706	11.786	0.18977	11.496	11.412	11.601	-0.28953					10	7	2	0	0	0	0.68648	1	3823	3823		6.2058	1.8765	1	403280			25164	8188	16066	16152	24190	24190					0.036525723004729116
PSVPVPAP	8	Unmodified	_PSVPVPAP_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	HCT116MG_D190212_S3	3	382.2211608886719	2	382.221072	762.42759	-0.045105	-1.724E-05	0.094316	3.605E-05	0.049211	1.881E-05	382.22111467047625	33.931	0.2604	33.637	33.507	33.767	-0.29419					8	4	2	0	0	0	0.32897	1	12495	12495		56.541	3.8482	1	6760400			25165	3044	16067	16153	24191	24191					0.03687343294279799
PSVPVPAP	8	Unmodified	_PSVPVPAP_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	HCT116MG_D190212_S4	4	382.2214050292969	2	382.221072	762.42759	0.12556	4.799E-05	0.39346	0.00015039	0.51901	0.00019838	382.22111978749325	34.068	0.20776	33.684	33.569	33.777	-0.38426					6	3	2	0	0	0	0.32897	1	12445	12445		56.541	3.8482	1	2332700			25166	3044	16067	16153	24192	24192					0.03687343294279799
PSVQQADDWKE	11	Unmodified	_PSVQQADDWKE_					0	0	0			REV__ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant	REV__ADGRB2|p.L1141Cfs*35|1|0.34|ENSG00000121753|chr1:31735214-31735214|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	652.3038940429688	2	651.801674	1301.58879	0.49243	0.00032096	-0.2209	-0.00014398	0.27153	0.00017698	651.8015471250907	40.19	0.56851	39.889	39.595	40.163	-0.30137					28	13	3	0	0	0	0.74191	1	14822	14822		6.1918	6.1918	1	14060000	+		25167	9869	16068	16154	24193	24193					-0.04993603921138856
PSVYIEWLSLF	11	Unmodified	_PSVYIEWLSLF_					0	0	0			REV__nc|ENSG00000164935|Q9H295-2|DCSTAMP	REV__nc|ENSG00000164935|Q9H295-2|DCSTAMP	MSMS	HCT116MG_D190212_S4	4	677.3594360351562	2	677.358096	1352.70164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.91	1	40.532	40.032	41.032	-0.37732								0	0	0	0.94538	1	15026	15026		8.7454	0	1		+		25168	10341	16069	16155	24194	24194					0.039396965428750264
PSWPCCCCCSC	11	Unmodified	_PSWPCCCCCSC_					0	0	0		CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant	CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant	CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	596.1654052734375	2	596.164561	1190.31457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.368	1	38.275	37.775	38.775	-0.09301								0	0	0	0.9598	1	14412	14412		1.1933	0.88631	1				25169	605	16070	16156	24195	24195					-0.272975671354061
PSYHDLVF	8	Unmodified	_PSYHDLVF_					0	0	0		ENSG00000198553|ENST00000312942|KCNRG;nc|ENSG00000198553|Q8N5I3-2|KCNRG	ENSG00000198553|ENST00000312942|KCNRG	ENSG00000198553|ENST00000312942|KCNRG	MULTI-MSMS	HCT116MG_D190212_S4	4	489.2394714355469	2	489.239993	976.465432	-0.083909	-4.1052E-05	-0.34019	-0.00016643	-0.42409	-0.00020748	489.2395837077207	50.864	0.20459	50.509	50.368	50.573	-0.35483					5	3	2	0	0	0	0.6854	1	18937	18937		24.674	5.2349	1	3416200			25170	6239	16071	16157	24196	24196					-0.023741905108977335
PTDKHTLVK	9	Unmodified	_PTDKHTLVK_					0	0	0		nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000157087|Q01814-5|ATP2B2;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000058668|P23634-5|ATP2B4	nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000070961|P20020-1|ATP2B1	MULTI-MSMS	HCT116MG_D190212_S1	1	519.8008422851562	2	519.800749	1037.58694	0.36897	0.00019179	-0.012706	-6.6045E-06	0.35627	0.00018519	519.800660982276	16.187	0.20845	16.187	16.056	16.265	0					7	3	3	0	0	0	0.021544	1	5439	5439		94.909	51.05	1	8236300			25171	1101	16072	16158	24197	24197					0.06965431851631365
PTDKHTLVK	9	Unmodified	_PTDKHTLVK_					0	0	0		nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000157087|Q01814-5|ATP2B2;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000058668|P23634-5|ATP2B4	nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000070961|P20020-1|ATP2B1	MULTI-MSMS	HCT116MG_D190212_S2	2	519.8006591796875	2	519.800749	1037.58694	0.30204	0.000157	-0.13549	-7.0428E-05	0.16655	8.6575E-05	519.8005888304929	16.676	0.31252	16.334	16.204	16.516	-0.34183					9	5	3	0	0	0	0.0080275	1	5631	5631		118.21	74.351	1	28500000			25172	1101	16072	16158	24198	24198					0.06965431851631365
PTDNQIKARK	10	Unmodified	_PTDNQIKARK_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-MSMS	HCT116MG_D190212_S1	1	390.8910827636719	3	390.891166	1169.65167	-0.030172	-1.1794E-05	0.031241	1.2212E-05	0.0010682	4.1755E-07	390.89109182220386	14.676	0.15598	14.676	14.598	14.754	0					8	2	4	0	0	0	0.87239	1	4848	4848		7.9454	6.2031	1	5513000			25173	5617	16073	16159	24199	24199					0.07363006657578808
PTDNQIKARK	10	Unmodified	_PTDNQIKARK_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-MSMS	HCT116MG_D190212_S2	2	390.8911437988281	3	390.891166	1169.65167	-0.030482	-1.1915E-05	-0.15482	-6.0519E-05	-0.18531	-7.2434E-05	390.8910740077246	10.717	0.33109	10.444	10.296	10.627	-0.27365					19	12	2	0	0	0	0.80632	1	3393	3393		10.315	8.723	1	655170			25174	5617	16073	16159	24200	24200					0.07363006657578808
PTDPKVVVY	9	Unmodified	_PTDPKVVVY_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	HCT116MG_D190212_S1	1	509.2845153808594	2	509.2844	1016.55425	0.37263	0.00018978	-0.15287	-7.7852E-05	0.21977	0.00011192	509.28420127076953	33.893	0.41768	33.893	33.711	34.128	0					21	7	4	0	0	0	0.02327	1	12546	12546		93.166	47.145	1	60299000			25175	2340	16074	16160	24201	24201					0.046632247287675455
PTDPKVVVY	9	Unmodified	_PTDPKVVVY_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2842102050781	2	509.2844	1016.55425	0.29122	0.00014831	-0.088615	-4.513E-05	0.2026	0.00010318	509.284267784959	34.116	0.41517	33.94	33.76	34.175	-0.17512					20	7	4	0	0	0	0.0096523	1	12666	12666		114.2	70.343	1	306790000			25176	2340	16074	16160	24202	24202					0.046632247287675455
PTDPKVVVY	9	Unmodified	_PTDPKVVVY_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	HCT116MG_D190212_S3	3	509.2843322753906	2	509.2844	1016.55425	0.21311	0.00010853	0.028282	1.4404E-05	0.24139	0.00012294	509.2843028716399	34.289	0.41626	33.995	33.767	34.184	-0.29419					19	7	4	0	0	0	0.032914	1	12600	12600		83.429	47.302	1	23516000			25177	2340	16074	16160	24203	24203					0.046632247287675455
PTDPKVVVY	9	Unmodified	_PTDPKVVVY_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MSMS	HCT116MG_D190212_S4	4	509.2844543457031	2	509.2844	1016.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.417	1	34.031	33.531	34.531	-0.38558								0	0	0	0.42657	1	12566	12566		32.305	20.665	1				25178	2340	16074	16160	24204	24204					0.046632247287675455
PTDSLNNDNKY	11	Unmodified	_PTDSLNNDNKY_					0	0	0		ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	HCT116MG_D190212_S2	2	640.7918701171875	2	640.791306	1279.56806	0.58606	0.00037554	0.30373	0.00019463	0.88979	0.00057017	640.7915022103548	24.898	0.20708	24.523	24.4	24.608	-0.37521					7	3	3	0	0	0	1.1724000000000001E-30	1	8952	8952		259.34	199.26	1	27166000			25179	2844	16075	16161	24205	24205					-0.06054194300736526
PTDSLNNDNKY	11	Unmodified	_PTDSLNNDNKY_					0	0	0		ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-MATCH	HCT116MG_D190212_S1	1		2	640.791306	1279.56806	0.8399	0.0005382	-0.033151	-2.1243E-05	0.80675	0.00051696	640.7914051885965	24.438	0.26107	24.438	24.36	24.621	0	-0.05702	-6.7404E-05	NaN	259.34	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6236900			25180	2844	16075	16161							-0.06054194300736526
PTDSLNNDNKY	11	Unmodified	_PTDSLNNDNKY_					0	0	0		ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MULTI-MATCH	HCT116MG_D190212_S3	3		2	640.791306	1279.56806	0.54074	0.0003465	-0.11648	-7.4639E-05	0.42426	0.00027186	640.7912008758473	24.607	0.20842	24.524	24.393	24.601	-0.083694	0.028639	-0.0001742	NaN	259.34	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2162500			25181	2844	16075	16161							-0.06054194300736526
PTELPELLKL	10	Unmodified	_PTELPELLKL_					0	0	0		ENST00000548173.5_1_12:57140708-57146082:-|nuORF;PRIM1|p.C170*|1|0.29|ENSG00000198056|chr12:56746104-56746117|CTGATTCATCACAG/-|frameshift_variant;PRIM1|p.K221Nfs*24|1|0.34|ENSG00000198056|chr12:56743072-56743072|T/-|frameshift_variant;ENSG00000198056|ENST00000338193|PRIM1	ENST00000548173.5_1_12:57140708-57146082:-|nuORF	ENST00000548173.5_1_12:57140708-57146082:-|nuORF	MSMS	HCT116MG_D190212_S1	1	576.8076171875	2	576.847364	1151.68018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.763	1	46.763	46.263	47.263	0								0	0	0	0.94339	1	17751	17751		6.2058	0.9089	1				25182	6203	16076	16162	24206	24206					0.11040311514170753
PTESSQNGKQY	11	Unmodified	_PTESSQNGKQY_					0	0	0		ENSG00000165609|ENST00000491614|NUDT5;ENST00000378952.7_1_10:12222436-12228317:-|nuORF	ENSG00000165609|ENST00000491614|NUDT5	ENSG00000165609|ENST00000491614|NUDT5	MULTI-MSMS	HCT116MG_D190212_S2	2	619.7868041992188	2	619.786024	1237.55749	0.43839	0.00027171	0.84478	0.00052359	1.2832	0.00079529	619.7867083036336	16.672	0.41657	16.33	16.048	16.464	-0.34183					18	7	4	0	0	0	0.0032285	1	5652	5652		146.48	96.549	1	11538000			25183	4783	16077	16163	24207	24207					-0.051781769551553225
PTFGKAGK	8	Unmodified	_PTFGKAGK_					0	0	0			REV__DSG2|p.P648H|1|0.28|ENSG00000046604|chr18:31541256-31541256|C/A|missense_variant	REV__DSG2|p.P648H|1|0.28|ENSG00000046604|chr18:31541256-31541256|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	403.23248291015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.577	1	63.455	62.955	63.955	-0.12264								0	0	0	0.8837	1	24641	24641		0.69038	0	1		+		25184	10416	16078	16164	24208	24208					0.039341480428561226
PTGAAGPL	8	Unmodified	_PTGAAGPL_					0	0	0			REV__ENSG00000115896|ENST00000428675|PLCL1	REV__ENSG00000115896|ENST00000428675|PLCL1	MULTI-MSMS	HCT116MG_D190212_S3	3	683.3720703125	1	683.372266	682.36499	0.90201	0.00061641	-0.54044	-0.00036932	0.36157	0.00024709	683.3717524560636	31.687	0.2606	31.416	31.273	31.534	-0.27028					7	4	2	0	0	0	0.083541	1	11631	11631		98.807	7.9714	1	3215900	+		25185	11562	16079	16165	24209	24209					0.011101972261030824
PTGAAGPL	8	Unmodified	_PTGAAGPL_					0	0	0			REV__ENSG00000115896|ENST00000428675|PLCL1	REV__ENSG00000115896|ENST00000428675|PLCL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	683.372266	682.36499	0.90201	0.00061641	-0.54044	-0.00036932	0.36157	0.00024709	683.3717524560636	31.687	0.2606	31.416	31.273	31.534	-0.27028	-0.031472	-0.00020252	NaN	98.807	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3215900	+		25186	11562	16079	16165							0.011101972261030824
PTGLLRFIRKL	11	Unmodified	_PTGLLRFIRKL_					0	0	0			REV__nc|ENSG00000164885|Q00535-2|CDK5	REV__nc|ENSG00000164885|Q00535-2|CDK5	MSMS	HCT116MG_D190212_S4	4	657.4249877929688	2	657.424439	1312.83433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.13	1	42.755	42.255	43.255	-0.37493								0	0	0	0.9598	1	15863	15863		1.1933	0.79263	1		+		25187	13027	16080	16166	24210	24210					0.19042185790203803
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S2	2	723.4058227539062	1	723.403566	722.39629	1.1487	0.00083098	-0.46407	-0.00033571	0.68464	0.00049527	723.4033495812473	31.267	0.41255	31	30.819	31.232	-0.26704					12	7	2	0	0	0	0.052199	1	11524	11524		120.86	16.546	1	10566000	+		25188	12706	16081	16167	24211	24211					0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S3	3	723.4044189453125	1	723.403566	722.39629	0.4974	0.00035982	0.576	0.00041668	1.0734	0.0007765	723.4037742717555	31.397	0.47006	31.126	30.856	31.326	-0.27028					14	8	2	0	0	0	0.052199	1	11434	11434		120.86	16.546	1	14811000	+		25189	12706	16081	16167	24212	24212					0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S3	3	723.403564453125	1	723.403566	722.39629	0.368	0.00026621	0.4162	0.00030108	0.78419	0.00056729	723.403725303836	34.659	0.51965	34.362	34.181	34.7	-0.29707					16	9	2	0	0	0	0.052199	1	12749	12749		120.86	22.05	1	12435000	+		25190	12706	16081	16167	24213	24213					0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S4	4	723.404052734375	1	723.403566	722.39629	0.72503	0.00052449	0.17545	0.00012692	0.90049	0.00065141	723.4035413344635	31.524	0.51958	31.153	30.868	31.387	-0.37026					20	9	3	0	0	0	0.052199	1	11406	11406		120.86	16.546	1	15142000	+		25191	12706	16081	16167	24214	24214					0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S4	4	723.4034423828125	1	723.403566	722.39629	0.74127	0.00053624	0.090836	6.5711E-05	0.83211	0.00060195	723.403470455544	34.803	0.55913	34.417	34.087	34.646	-0.38606					17	10	2	0	0	0	0.052199	1	12686	12686		120.86	22.05	1	13079000	+		25192	12706	16081	16167	24215	24215					0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	HCT116MG_D190212_S2	2		1	723.403566	722.39629	1.2707	0.00091925	0.36371	0.00026311	1.6344	0.0011824	723.4038297745303	34.532	0.20583	34.356	34.227	34.433	-0.17512	-0.022054	8.1937E-05	NaN	120.86	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9087600	+		25193	12706	16081	16167							0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	723.403566	722.39629	1.1487	0.00083098	-0.46407	-0.00033571	0.68464	0.00049527	723.4033495812473	31.267	0.41255	31	30.819	31.232	-0.26704	-0.093596	-0.0005759	NaN	120.86	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10566000	+		25194	12706	16081	16167							0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	723.403566	722.39629	0.368	0.00026621	0.4162	0.00030108	0.78419	0.00056729	723.403725303836	34.659	0.51965	34.362	34.181	34.7	-0.29707	-0.016463	0.00011991	NaN	120.86	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12435000	+		25195	12706	16081	16167							0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	723.403566	722.39629	0.4974	0.00035982	0.576	0.00041668	1.0734	0.0007765	723.4037742717555	31.397	0.47006	31.126	30.856	31.326	-0.27028	0.033332	0.00017649	NaN	120.86	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14811000	+		25196	12706	16081	16167							0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	723.403566	722.39629	0.74127	0.00053624	0.090836	6.5711E-05	0.83211	0.00060195	723.403470455544	34.803	0.55913	34.417	34.087	34.646	-0.38606	0.038516	-0.00011546	NaN	120.86	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13079000	+		25197	12706	16081	16167							0.02398770260197125
PTGVPGPV	8	Unmodified	_PTGVPGPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	723.403566	722.39629	0.72503	0.00052449	0.17545	0.00012692	0.90049	0.00065141	723.4035413344635	31.524	0.51958	31.153	30.868	31.387	-0.37026	0.060264	-0.00011326	NaN	120.86	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15142000	+		25198	12706	16081	16167							0.02398770260197125
PTHRVHHFYP	10	Unmodified	_PTHRVHHFYP_					0	0	0		nc|ENSG00000272391|A8CG34|POM121C	nc|ENSG00000272391|A8CG34|POM121C	nc|ENSG00000272391|A8CG34|POM121C	MSMS	HCT116MG_D190212_S1	1	430.8878479003906	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.974	1	63.974	63.474	64.474	0								0	0	0	0.97054	1	24701	24701		0.13989	0.04505	1				25199	9659	16082	16168	24216	24216					0.00853863442898728
PTHSDYTM	8	Unmodified	_PTHSDYTM_					0	0	0		ENST00000534664.1_1_14:20824085-20824774:+|nuORF;ENST00000530598.2_1_14:20824058-20825335:+|nuORF;ENSG00000129484|ENST00000429687|PARP2;nc|ENSG00000129484|Q9UGN5|PARP2	ENST00000534664.1_1_14:20824085-20824774:+|nuORF	ENST00000534664.1_1_14:20824085-20824774:+|nuORF	MSMS	HCT116MG_D190212_S3	3	476.198486328125	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6681	1	3.7045	3.2045	4.2045	0.036387								0	0	0	0.8837	1	1109	1109		0.69038	0	1				25200	3037	16083	16169	24217	24217					-0.09679304039013914
PTKGLRERRH	10	Unmodified	_PTKGLRERRH_					0	0	0		ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	MULTI-SECPEP	HCT116MG_D190212_S2	2	625.7671508789062	2	625.365444	1248.71634	0.47646	0.00029796	-0.7048	-0.00044076	-0.22834	-0.0001428	625.36573866349	28.918	0.61352	28.602	28.249	28.863	-0.31613					15	11	2	0	0	0	0.27462	1	10660	10660		24.021	6.9077	1	22283000			25201	4486	16084	16170	24218	24218					0.10192626254274728
PTKKIGKKPV	10	Unmodified	_PTKKIGKKPV_					0	0	0		nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;TACC2|p.A2295T|1|0.22|ENSG00000138162|chr10:122211308-122211308|G/A|missense_variant	nc|ENSG00000138162|O95359-6|TACC2	nc|ENSG00000138162|O95359-6|TACC2	MSMS	HCT116MG_D190212_S4	4	548.8298950195312	2	548.366059	1094.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.771	1	46.4	45.9	46.9	-0.37134								0	0	0	0.95507	1	17278	17278		3.5965	1.7523	1				25202	3537	16085	16171	24219	24219					0.17399447570460325
PTKLLPPW	8	Unmodified	_PTKLLPPW_					0	0	0			REV__POM121L2|p.S954Pfs*?|1|0.12|ENSG00000158553|chr6:27309311-27309311|A/-|frameshift_variant	REV__POM121L2|p.S954Pfs*?|1|0.12|ENSG00000158553|chr6:27309311-27309311|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	476.2886962890625	2	476.286746	950.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.348	1	46.978	46.478	47.478	-0.37038								0	0	0	0.8837	1	17511	17511		2.3027	0	1		+		25203	17434	16086	16172	24220	24220					0.08168153662177247
PTKRNIQRVL	10	Unmodified	_PTKRNIQRVL_					0	0	0			REV__nc|ENSG00000127314|P61224-2|RAP1B	REV__nc|ENSG00000127314|P61224-2|RAP1B	MULTI-MSMS	HCT116MG_D190212_S4	4	408.9222106933594	3	408.922689	1223.74624	0.25682	0.00010502	-1.2383	-0.00050639	-0.98152	-0.00040137	408.9220886530841	55.62	0.4686	55.308	55.09	55.558	-0.312					16	8	3	0	0	0	0.88823	1	20835	20835		0.62683	0	1	7224600	+		25204	11584	16087	16173	24221	24221					0.1433156519960903
PTKRNIQRVL	10	Unmodified	_PTKRNIQRVL_					0	0	0			REV__nc|ENSG00000127314|P61224-2|RAP1B	REV__nc|ENSG00000127314|P61224-2|RAP1B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	408.922689	1223.74624	-0.14169	-5.794E-05	-0.83625	-0.00034196	-0.97794	-0.0003999	408.9222643758332	55.487	0.46275	55.301	55.072	55.535	-0.18565	-0.0034741	0.00010048	NaN	0.62683	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47145000	+		25205	11584	16087	16173							0.1433156519960903
PTKRNIQRVL	10	Unmodified	_PTKRNIQRVL_					0	0	0			REV__nc|ENSG00000127314|P61224-2|RAP1B	REV__nc|ENSG00000127314|P61224-2|RAP1B	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	408.922689	1223.74624	0.25682	0.00010502	-1.2383	-0.00050639	-0.98152	-0.00040137	408.9220886530841	55.62	0.4686	55.308	55.09	55.558	-0.312	0.0034741	-0.00039279	NaN	0.62683	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7224600	+		25206	11584	16087	16173							0.1433156519960903
PTKRVRSS	8	Unmodified	_PTKRVRSS_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L;RANBP3L|p.M97Yfs*9|1|0.2|ENSG00000164188|chr5:36265500-36265501|-/A|frameshift_variant	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	MULTI-MSMS	HCT116MG_D190212_S1	1	465.7776184082031	2	465.777608	929.540663	0.10219	4.7598E-05	0.042131	1.9624E-05	0.14432	6.7222E-05	465.77747537604694	44.208	2.867	44.208	43.108	45.975	0					104	54	4	0	0	0	0.85571	1	16711	16711		4.3292	2.0265	1	83001000			25207	4679	16088	16174	24222	24222					0.07307411740180214
PTKRVRSS	8	Unmodified	_PTKRVRSS_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L;RANBP3L|p.M97Yfs*9|1|0.2|ENSG00000164188|chr5:36265500-36265501|-/A|frameshift_variant	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	MULTI-MSMS	HCT116MG_D190212_S1	1	465.77764892578125	2	465.777608	929.540663	0.022571	1.0513E-05	0.17265	8.0417E-05	0.19522	9.093E-05	465.777600399663	51.032	0.56881	51.032	50.574	51.143	0					15	10	2	0	0	0	0.83066	1	19501	19501		7.9102	3.5809	1	35792000			25208	4679	16088	16174	24223	24223					0.07307411740180214
PTKSFEEET	9	Unmodified	_PTKSFEEET_					0	0	0			REV__ENSG00000103429|ENST00000261658|BFAR	REV__ENSG00000103429|ENST00000261658|BFAR	MULTI-SECPEP	HCT116MG_D190212_S2	2	534.2796630859375	2	534.248212	1066.48187	0.31191	0.00016663	-0.20381	-0.00010889	0.10809	5.7749E-05	534.2481014408589	53.233	0.25954	53.044	52.861	53.121	-0.18922					8	4	3	0	0	0	0.26128	1	20439	20439		1.3295	0	1	9771900	+		25209	11190	16089	16175	24224	24224					-0.04871154135480538
PTKSVLAL	8	Unmodified	_PTKSVLAL_					0	0	0		ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	MSMS	HCT116MG_D190212_S3	3	414.7615966796875	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.004	1	47.688	47.188	48.188	-0.31596								0	0	0	0.8837	1	18043	18043		4.3292	0	1				25210	7234	16090	16176	24225	24225					0.09099874391165486
PTKVDKLQEPL	11	Unmodified	_PTKVDKLQEPL_					0	0	0		nc|ENSG00000077092|P10826-3|RARB;ENSG00000077092|ENST00000330688|RARB;nc|ENSG00000077092|P10826|RARB	nc|ENSG00000077092|P10826-3|RARB	nc|ENSG00000077092|P10826-3|RARB	MSMS	HCT116MG_D190212_S4	4	634.365234375	2	634.366453	1266.71835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.792	1	43.418	42.918	43.918	-0.37433								0	0	0	0.95636	1	16110	16110		2.9952	1.151	1				25211	1347	16091	16177	24226	24226					0.09566197428853229
PTKVGIIN	8	Unmodified	_PTKVGIIN_					0	0	0			REV__tr|U7T3I8|U7T3I8_FUSNUTranscriptiontermination/antiterminationproteinNusGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusGPE=3SV=1	REV__tr|U7T3I8|U7T3I8_FUSNUTranscriptiontermination/antiterminationproteinNusGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=nusGPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	421.259521484375	2	421.260728	840.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.987	1	48.987	48.487	49.487	0								0	0	0	0.8837	1	18655	18655		2.3027	0	1		+		25212	17949	16092	16178	24227	24227					0.08026990248413313
PTKVRPLKIDK	11	Unmodified	_PTKVRPLKIDK_					0	0	0			REV__ENST00000551506.1_1_12:46623410-46662443:-|nuORF	REV__ENST00000551506.1_1_12:46623410-46662443:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2803039550781	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.799	1	57.505	57.005	58.005	-0.29465								0	0	0	0.9613	1	21705	21705		0.40827	0.24894	1		+		25213	16416	16093	16179	24228	24228					0.17810175690669894
PTKYKERAPEQ	11	Unmodified	_PTKYKERAPEQ_					0	0	0		ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	MSMS	HCT116MG_D190212_S4	4	673.857177734375	2	673.856783	1345.69901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.521	1	28.19	27.69	28.69	-0.33138								0	0	0	0.89672	1	10260	10260		20.415	5.1661	1				25214	5324	16094	16180	24229	24229					0.039992411379671466
PTLASVSPAP	10	Unmodified	_PTLASVSPAP_					0	0	0			REV__ENSG00000163159|ENST00000368892|VPS72	REV__ENSG00000163159|ENST00000368892|VPS72	MSMS	HCT116MG_D190212_S3	3	470.2584228515625	2	470.260925	938.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.287	1	29.065	28.565	29.565	-0.22195								0	0	0	0.82636	1	10634	10634		25.399	1.3787	1		+		25215	12912	16095	16181	24230	24230					0.035583651776164515
PTLGQPPQTE	10	Unmodified	_PTLGQPPQTE_					0	0	0			REV__ENST00000419531.2_1_1:59359265-59361990:+|nuORF	REV__ENST00000419531.2_1_1:59359265-59361990:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2727661132812	2	534.272021	1066.52949	0.54678	0.00029213	-0.14874	-7.9467E-05	0.39804	0.00021266	534.2718796701738	37.409	0.31197	37.107	36.925	37.237	-0.30137					12	5	3	0	0	0	0.31047	1	13848	13848		49.554	5.696	1	21902000	+		25216	15508	16096	16182	24231	24231					-0.0011145514461077255
PTLGQPPQTE	10	Unmodified	_PTLGQPPQTE_					0	0	0			REV__ENST00000419531.2_1_1:59359265-59361990:+|nuORF	REV__ENST00000419531.2_1_1:59359265-59361990:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	534.2728271484375	2	534.272021	1066.52949	0.32042	0.00017119	0.38079	0.00020344	0.7012	0.00037463	534.2722622024304	37.489	0.25684	37.105	36.926	37.183	-0.3839					6	4	2	0	0	0	0.61405	1	13774	13774		27.223	2.2323	1	5322100	+		25217	15508	16096	16182	24232	24232					-0.0011145514461077255
PTLGQPPQTE	10	Unmodified	_PTLGQPPQTE_					0	0	0			REV__ENST00000419531.2_1_1:59359265-59361990:+|nuORF	REV__ENST00000419531.2_1_1:59359265-59361990:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	534.272021	1066.52949	0.54678	0.00029213	-0.14874	-7.9467E-05	0.39804	0.00021266	534.2718796701738	37.409	0.31197	37.107	36.925	37.237	-0.30137	0.00085511	-0.00010449	NaN	49.554	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21902000	+		25218	15508	16096	16182							-0.0011145514461077255
PTLGQPPQTE	10	Unmodified	_PTLGQPPQTE_					0	0	0			REV__ENST00000419531.2_1_1:59359265-59361990:+|nuORF	REV__ENST00000419531.2_1_1:59359265-59361990:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	534.272021	1066.52949	0.32042	0.00017119	0.38079	0.00020344	0.7012	0.00037463	534.2722622024304	37.489	0.25684	37.105	36.926	37.183	-0.3839	-0.00085511	0.00046133	NaN	49.554	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5322100	+		25219	15508	16096	16182							-0.0011145514461077255
PTLGSRRRPK	10	Unmodified	_PTLGSRRRPK_					0	0	0			REV__ENST00000607967.1_1_10:104402974-104403835:-|nuORF	REV__ENST00000607967.1_1_10:104402974-104403835:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	584.679931640625	2	584.357088	1166.69962	0.52485	0.0003067	-0.91553	-0.000535	-0.39068	-0.0002283	584.3564547267497	55.436	0.92044	55.25	54.459	55.38	-0.18565					21	17	2	0	0	0	0.30656	1	21131	21131		15.248	15.248	1	13044000	+		25220	16782	16097	16183	24233	24233					0.12294125368293862
PTLPAHSFKCY	11	Unmodified	_PTLPAHSFKCY_					0	0	0			REV__ENSG00000144161|ENST00000409573|ZC3H8	REV__ENSG00000144161|ENST00000409573|ZC3H8	MSMS	HCT116MG_D190212_S2	2	632.3117065429688	2	632.313166	1262.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.457	1	50.285	49.785	50.785	-0.1719								0	0	0	0.95023	1	19337	19337		6.2058	0	1		+		25221	12416	16098	16184	24234	24234					-0.009022563373036974
PTLPRRRCRQI	11	Unmodified	_PTLPRRRCRQI_					0	0	0		ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	698.40869140625	2	698.409329	1394.8041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.354	1	30.105	29.605	30.605	-0.24946								0	0	0	0.94538	1	11060	11060		8.7454	3.0136	1				25222	18729	16099	16185	24235	24235					0.12249503853377064
PTLPRRRCRQI	11	Unmodified	_PTLPRRRCRQI_					0	0	0		ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	698.4085083007812	2	698.409329	1394.8041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.597	1	30.233	29.733	30.733	-0.36416								0	0	0	0.93717	1	11073	11073		13.042	3.6593	1				25223	18729	16099	16185	24236	24236					0.12249503853377064
PTLPRRRCRQI	11	Unmodified	_PTLPRRRCRQI_					0	0	0		ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	698.4090576171875	2	698.409329	1394.8041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.131	1	33.745	33.245	34.245	-0.38546								0	0	0	0.94538	1	12451	12451		8.7454	3.0136	1				25224	18729	16099	16185	24237	24237					0.12249503853377064
PTLPRRRCRQI	11	Unmodified	_PTLPRRRCRQI_					0	0	0		ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	ZNF469|p.P1292Lfs*235|1|0.47|ENSG00000225614|chr16:88431424-88431424|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	698.408935546875	2	698.409329	1394.8041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.254	1	33.868	33.368	34.368	-0.38558								0	0	0	0.94538	1	12500	12500		8.7454	3.0136	1				25225	18729	16099	16185	24238	24238					0.12249503853377064
PTLQEVILANL	11	Unmodified	_PTLQEVILANL_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	HCT116MG_D190212_S1	1	606.3558959960938	2	605.855721	1209.69689	0.59045	0.00035773	-0.028812	-1.7456E-05	0.56164	0.00034027	605.8556564041332	53.998	0.25481	53.998	53.822	54.077	0					13	4	4	0	0	0	0.60584	1	20688	20688		49.527	24.646	1	157780000			25226	5569	16100	16186	24239	24239					0.10042812400138246
PTLQEVILANL	11	Unmodified	_PTLQEVILANL_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	HCT116MG_D190212_S1	1	1210.703369140625	1	1210.70417	1209.69689	0.74949	0.00090741	-0.95521	-0.0011565	-0.20571	-0.00024906	1210.7026401036926	53.972	0.15282	53.972	53.873	54.026	0					4	2	2	0	0	0	0.55243	1	20705	20705		57.249	35.659	1	12806000			25227	5569	16100	16186	24240	24240					0.10042812400138246
PTLQEVILANL	11	Unmodified	_PTLQEVILANL_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	HCT116MG_D190212_S2	2	605.8561401367188	2	605.855721	1209.69689	0.65894	0.00039922	-0.12694	-7.6905E-05	0.53201	0.00032232	605.855606947858	54.211	0.41053	54.021	53.842	54.252	-0.1894					27	7	5	0	0	0	0.55243	1	20850	20850		57.249	17.01	1	870750000			25228	5569	16100	16186	24241	24241					0.10042812400138246
PTLQEVILANL	11	Unmodified	_PTLQEVILANL_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	HCT116MG_D190212_S2	2	1210.7047119140625	1	1210.70417	1209.69689	0.49878	0.00060388	0.043575	5.2756E-05	0.54236	0.00065663	1210.7041023896559	54.211	0.30854	54.022	53.842	54.15	-0.1894					15	5	4	0	0	0	0.60584	1	20867	20867		49.527	10.314	1	126890000			25229	5569	16100	16186	24242	24242					0.10042812400138246
PTLQEVILANL	11	Unmodified	_PTLQEVILANL_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	HCT116MG_D190212_S3	3	605.8563842773438	2	605.855721	1209.69689	0.48563	0.00029422	0.18827	0.00011407	0.6739	0.00040829	605.8558635281264	54.459	0.41833	54.163	53.981	54.4	-0.29587					18	7	4	0	0	0	0.62544	2	20619	20603;20619		47.594	22.603	1	26462000			25230	5569	16100	16186	24243;24244	24244					0.10042812400138246
PTLQEVILANL	11	Unmodified	_PTLQEVILANL_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MULTI-MSMS	HCT116MG_D190212_S4	4	605.8560791015625	2	605.855721	1209.69689	1.153	0.00069857	-0.6023	-0.0003649	0.55073	0.00033366	605.8553540143964	54.488	0.26059	54.165	53.984	54.244	-0.32348					13	4	4	0	0	0	0.62544	1	20360	20360		47.594	28.232	1	10940000			25231	5569	16100	16186	24245	24245					0.10042812400138246
PTPAQLTK	8	Unmodified	_PTPAQLTK_					0	0	0		nc|ENSG00000134504|Q719H9|KCTD1;KCTD1|p.L68Wfs*21|1|0.32|ENSG00000134504|chr18:26476621-26476621|A/-|frameshift_variant;ENSG00000134504|ENST00000580059|KCTD1	nc|ENSG00000134504|Q719H9|KCTD1	nc|ENSG00000134504|Q719H9|KCTD1	MSMS	HCT116MG_D190212_S1	1	428.24871826171875	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.575	1	31.575	31.075	32.075	0								0	0	0	0.8837	1	11622	11622		2.5775	0	1				25232	3288	16101	16187	24246	24246					0.05310399868744753
PTPPRRRHGP	10	Unmodified	_PTPPRRRHGP_					0	0	0			REV__ENST00000495879.1_1_3:61547567-61547879:+|nuORF	REV__ENST00000495879.1_1_3:61547567-61547879:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	585.8334350585938	2	585.83378	1169.65301	0.65668	0.0003847	-1.0946	-0.00064127	-0.43794	-0.00025656	585.8329155461252	14.676	0.15598	14.676	14.598	14.754	0					4	2	2	0	0	0	0.86339	1	4847	4847		6.7232	0.51738	1	5772700	+		25233	16086	16102	16188	24247	24247					0.07496685537034864
PTPPSGTE	8	Unmodified	_PTPPSGTE_					0	0	0		ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MSMS	HCT116MG_D190212_S3	3	393.1883544921875	2	393.187426	784.360298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.353	1	59.092	58.592	59.592	-0.26114								0	0	0	0.8837	1	22600	22600		0.69038	0	1				25234	2404	16103	16189	24248	24248					-0.04050731707309296
PTQRDKDPW	9	Unmodified	_PTQRDKDPW_					0	0	0		ENST00000312352.11_1_12:48528578-48528769:+|nuORF	ENST00000312352.11_1_12:48528578-48528769:+|nuORF	ENST00000312352.11_1_12:48528578-48528769:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	571.3453979492188	2	571.783087	1141.55162	0.095752	5.4749E-05	0.084557	4.8348E-05	0.18031	0.0001031	572.2845804366269	30.461	0.20504	30.176	30.028	30.233	-0.28453					5	3	2	0	0	0	0.25874	1	11218	11218		7.2892	3.3448	1	23169000			25235	7064	16104	16190	24249	24249					-0.013492306761918371
PTRAAGWSS	9	Unmodified	_PTRAAGWSS_					0	0	0		ENST00000219368.7_1_16:74773991-74808682:-|nuORF	ENST00000219368.7_1_16:74773991-74808682:-|nuORF	ENST00000219368.7_1_16:74773991-74808682:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	466.7328796386719	2	466.732866	931.451179	-0.034592	-1.6145E-05	0.26554	0.00012394	0.23095	0.00010779	466.7329392823466	21.139	1.1941	20.929	20.292	21.486	-0.20959					48	22	3	0	0	0	0.35128	1	7348	7348		25.399	1.3787	1	21714000			25236	6749	16105	16191	24250	24250					-0.017288429391896898
PTSATAWHWC	10	Unmodified	_PTSATAWHWC_					0	0	0			REV__KIF19|p.H272Tfs*16|1|0.15|ENSG00000196169|chr17:74346412-74346412|C/-|frameshift_variant	REV__KIF19|p.H272Tfs*16|1|0.15|ENSG00000196169|chr17:74346412-74346412|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	580.2536010742188	2	580.253108	1158.49166	0.37392	0.00021697	0.66536	0.00038608	1.0393	0.00060305	580.2530864128852	20.036	0.31246	20.084	19.999	20.311	0.048109					8	5	3	0	0	0	0.86862	1	6937	6937		6.2058	1.3088	1	3915100	+		25237	16927	16106	16192	24251	24251					-0.08124244611053655
PTSEPKGSDHL	11	Unmodified	_PTSEPKGSDHL_					0	0	0			REV__ENST00000522319.5_3_8:99135677-99139891:+|nuORF	REV__ENST00000522319.5_3_8:99135677-99139891:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	584.7506103515625	2	584.28566	1166.55677	0.39595	0.00023135	-0.10966	-6.4072E-05	0.28629	0.00016728	584.285544231568	28.258	0.36528	28.052	27.968	28.333	-0.20593					11	6	3	0	0	0	0.33243	1	10226	10226		27.223	10.11	1	5955500	+		25238	16246	16107	16193	24252	24252					-0.019849716042244836
PTSGFGLS	8	Unmodified	_PTSGFGLS_					0	0	0			REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF	REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	765.3775634765625	1	765.377746	764.370469	1.2024	0.00092026	-0.26468	-0.00020258	0.93768	0.00071768	765.377384209532	31.421	0.51836	31.172	30.992	31.51	-0.24883					17	9	2	0	0	0	0.32897	1	11584	11584		56.541	6.8724	1	26278000	+		25239	15528	16108	16194	24253	24253					-0.021141239820849478
PTSGFGLS	8	Unmodified	_PTSGFGLS_					0	0	0			REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF	REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	765.3778076171875	1	765.377746	764.370469	0.53059	0.0004061	-0.31482	-0.00024095	0.21578	0.00016515	765.3771033963552	31.518	0.52132	31.247	31.117	31.638	-0.27028					14	9	2	0	0	0	0.32897	1	11524	11524		56.541	6.8724	1	11536000	+		25240	15528	16108	16194	24254	24254					-0.021141239820849478
PTSGFGLS	8	Unmodified	_PTSGFGLS_					0	0	0			REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF	REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	765.377746	764.370469	1.2024	0.00092026	-0.26468	-0.00020258	0.93768	0.00071768	765.377384209532	31.421	0.51836	31.172	30.992	31.51	-0.24883	-0.037447	9.0944E-06	NaN	56.541	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26278000	+		25241	15528	16108	16194							-0.021141239820849478
PTSGFGLS	8	Unmodified	_PTSGFGLS_					0	0	0			REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF	REV__ENST00000422734.1_1_10:24446874-24447108:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	765.377746	764.370469	0.53059	0.0004061	-0.31482	-0.00024095	0.21578	0.00016515	765.3771033963552	31.518	0.52132	31.247	31.117	31.638	-0.27028	0.037447	-2.9279E-05	NaN	56.541	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11536000	+		25242	15528	16108	16194							-0.021141239820849478
PTSIQTWAREV	11	Unmodified	_PTSIQTWAREV_					0	0	0			REV__ENST00000407418.7_1_22:39259990-39260104:-|nuORF	REV__ENST00000407418.7_1_22:39259990-39260104:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	644.8366088867188	2	644.338227	1286.6619	0.51075	0.0003291	-1.4549	-0.00093744	-0.94413	-0.00060834	644.8374898213716	35.115	0.51408	34.729	34.391	34.905	-0.38606					10	9	2	0	0	0	0.71271	1	12842	12842		17.113	0.96379	1	2887100	+		25243	15420	16109	16195	24255	24255					0.030035695921924344
PTSQKTTTKTT	11	Unmodified	_PTSQKTTTKTT_					0	0	0		ENST00000465534.5_1_1:207500166-207510288:+|nuORF;nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	597.353759765625	2	597.322242	1192.62993	0.50457	0.00030139	-1.4126	-0.00084379	-0.90805	-0.0005424	597.3216401710894	22.851	0.35213	22.832	22.699	23.051	-0.018869					8	6	2	0	0	0	0.36272	1	8115	8115		4.897	3.2444	1	2574500			25244	6060	16110	16196	24256	24256					0.041321571183516426
PTSQTGYGTNQ	11	Unmodified	_PTSQTGYGTNQ_					0	0	0			REV__ENSG00000089280|ENST00000254108|FUS	REV__ENSG00000089280|ENST00000254108|FUS	MULTI-MSMS	HCT116MG_D190212_S4	4	577.2597045898438	2	577.259642	1152.50473	0.25578	0.00014765	0.1185	6.8403E-05	0.37428	0.00021606	577.2594769816777	18.562	0.88138	18.381	17.63	18.511	-0.18052					18	16	2	0	0	0	0.72218	1	6211	6211		13.615	1.3742	1	1369400	+		25245	10972	16111	16197	24257	24257					-0.065421350179804
PTSSAQPRGSP	11	Unmodified	_PTSSAQPRGSP_					0	0	0			REV__chr7:987531-988328|147|16.22|0.13|6.94|+|1|CYP2W1,None|1	REV__chr7:987531-988328|147|16.22|0.13|6.94|+|1|CYP2W1,None|1	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7724609375	2	542.772719	1083.53089	0.48606	0.00026382	-0.0418	-2.2688E-05	0.44426	0.00024113	542.7725719764597	19.231	0.57214	18.862	18.732	19.304	-0.3695					19	10	2	0	0	0	0.67041	1	6689	6689		27.629	8.2669	1	6762100	+		25246	10187	16112	16198	24258	24258					-0.007538210558550418
PTSSARQPPGS	11	Unmodified	_PTSSARQPPGS_					0	0	0		ENST00000469423.1_1_19:12757375-12758379:-|nuORF	ENST00000469423.1_1_19:12757375-12758379:-|nuORF	ENST00000469423.1_1_19:12757375-12758379:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	543.7567749023438	2	542.772719	1083.53089	0.44335	0.00024064	0.076358	4.1445E-05	0.51971	0.00028208	542.772761311428	18.716	0.62491	18.786	18.406	19.031	0.069159					26	11	3	0	0	0	0.69138	1	6458	6458		24.991	0	1	9631700			25247	8137	16113	16199	24259	24259					-0.007538210558550418
PTSSQELAGAP	11	Unmodified	_PTSSQELAGAP_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MSMS	HCT116MG_D190212_S3	3	529.2619018554688	2	529.261653	1056.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.413	1	20.461	19.961	20.961	0.048107								0	0	0	0.91433	1	7058	7058		18.146	1.0335	1				25248	1105	16114	16200	24260	24260					-0.01724045524269968
PTSVRRFLRAG	11	Unmodified	_PTSVRRFLRAG_					0	0	0		ENST00000310045.7_1_18:65183737-65183962:-|nuORF	ENST00000310045.7_1_18:65183737-65183962:-|nuORF	ENST00000310045.7_1_18:65183737-65183962:-|nuORF	MSMS	HCT116MG_D190212_S1	1	630.3380737304688	2	630.370195	1258.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.513	1	26.513	26.013	27.013	0								0	0	0	0.95113	1	9583	9583		5.7319	0.83484	1				25249	7050	16115	16201	24261	24261					0.10682394539776396
PTTALQAAP	9	Unmodified	_PTTALQAAP_					0	0	0		MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	869.4720458984375	1	869.472709	868.465432	0.79039	0.00068722	-0.32645	-0.00028384	0.46394	0.00040338	869.4722973310709	36.794	0.30901	36.409	36.23	36.539	-0.38486					9	5	2	0	0	0	0.027492	1	13476	13476		88.904	3.2621	1	4328700			25250	3897	16116	16202	24262	24262					0.02593809489076193
PTTALQAAP	9	Unmodified	_PTTALQAAP_					0	0	0		MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;MUC4|p.N4902Tfs*8|1|0.37|ENSG00000145113|chr3:195761027-195761027|T/-|frameshift_variant;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	MUC4|p.L3985Ffs*274|1|0.3|ENSG00000145113|chr3:195779627-195779627|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	869.472709	868.465432	0.69726	0.00060625	0.084102	7.3125E-05	0.78136	0.00067937	869.472745241429	36.652	0.31224	36.351	36.197	36.509	-0.30113	-0.029126	0.00016379	NaN	88.904	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9434200			25251	3897	16116	16202							0.02593809489076193
PTVLGHGQQ	9	Unmodified	_PTVLGHGQQ_					0	0	0		ENSG00000107518|ENST00000355044|ATRNL1;nc|ENSG00000107518|Q5VV63-2|ATRNL1;ATRNL1|p.S600Lfs*32|1|0.15|ENSG00000107518|chr10:115266819-115266819|T/-|frameshift_variant	ENSG00000107518|ENST00000355044|ATRNL1	ENSG00000107518|ENST00000355044|ATRNL1	MSMS	HCT116MG_D190212_S1	1	468.7491149902344	2	468.748516	935.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.048	1	62.048	61.548	62.548	0								0	0	0	0.76973	1	23952	23952		1.8442	1.0506	1				25252	2115	16117	16203	24263	24263					0.012157300948956618
PTVTPTNVL	9	Unmodified	_PTVTPTNVL_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	941.5313110351562	1	941.530224	940.522947	1.0007	0.00094222	-0.26962	-0.00025385	0.73111	0.00068837	941.5299475411244	52.992	0.30785	52.992	52.794	53.102	0					9	5	2	0	0	0	0.01389	1	20281	20281		103.75	3.9493	1	41495000	+		25253	11095	16118	16204	24264	24264					0.0503065169467618
PTVVDYVRP	9	Unmodified	_PTVVDYVRP_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MULTI-MSMS	HCT116MG_D190212_S3	3	523.2613525390625	2	523.287474	1044.5604	-0.039557	-2.07E-05	-0.1437	-7.5197E-05	-0.18326	-9.5896E-05	523.2873651760782	36.197	0.20825	35.897	35.781	35.99	-0.30041					5	3	2	0	0	0	0.56733	1	13326	13326		13.042	2.9685	1	2330700	+		25254	13678	16119	16205	24265	24265					0.03989742960266085
PTVVDYVRP	9	Unmodified	_PTVVDYVRP_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MULTI-MATCH	HCT116MG_D190212_S2	2		2	523.287474	1044.5604	0.75516	0.00039517	-0.066299	-3.4694E-05	0.68886	0.00036047	523.2870949681354	36.018	0.31037	35.89	35.761	36.071	-0.12799	-0.003512	7.7218E-05	NaN	13.042	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10654000	+		25255	13678	16119	16205							0.03989742960266085
PTVVDYVRP	9	Unmodified	_PTVVDYVRP_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	523.287474	1044.5604	-0.039557	-2.07E-05	-0.1437	-7.5197E-05	-0.18326	-9.5896E-05	523.2873651760782	36.197	0.20825	35.897	35.781	35.99	-0.30041	0.003512	-3.7877E-06	NaN	13.042	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2330700	+		25256	13678	16119	16205							0.03989742960266085
PTVWVRLLCP	10	Unmodified	_PTVWVRLLCP_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MSMS	HCT116MG_D190212_S4	4	395.2274475097656	3	395.226722	1182.65834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.679	1	30.315	29.815	30.815	-0.36416								0	0	0	0.95507	1	11104	11104		1.7423	0.28716	1				25257	5590	16120	16206	24266	24266					0.0743122828464493
PTWAPAWPSGP	11	Unmodified	_PTWAPAWPSGP_					0	0	0			REV__ENSG00000269855|ENST00000601382|RNF225	REV__ENSG00000269855|ENST00000601382|RNF225	MULTI-MSMS	HCT116MG_D190212_S4	4	583.7847290039062	2	583.785099	1165.55564	0.37874	0.0002211	-0.45631	-0.00026638	-0.077567	-4.5283E-05	583.78469133664	23.911	0.8835	23.653	23.261	24.145	-0.25816					25	16	2	0	0	0	0.71271	1	8389	8389		17.113	3.498	1	2758500	+		25258	14437	16121	16207	24267	24267					-0.020511411825054893
PTWAPAWPSGP	11	Unmodified	_PTWAPAWPSGP_					0	0	0			REV__ENSG00000269855|ENST00000601382|RNF225	REV__ENSG00000269855|ENST00000601382|RNF225	MULTI-SECPEP	HCT116MG_D190212_S4	4	584.3038940429688	2	583.785099	1165.55564	0.37874	0.0002211	-0.45631	-0.00026638	-0.077567	-4.5283E-05	583.78469133664	23.911	0.8835	23.653	23.261	24.145	-0.25816					25	16	2	0	0	0	0.35307	1	8339	8339		5.7319	0	1	2758500	+		25259	14437	16121	16207	24268	24268					-0.020511411825054893
PTWGNDDGHL	10	Unmodified	_PTWGNDDGHL_					0	0	0			REV__nc|ENSG00000118257|O60462-6|NRP2	REV__nc|ENSG00000118257|O60462-6|NRP2	MSMS	HCT116MG_D190212_S1	1	556.3253784179688	2	556.243795	1110.47304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.587	1	21.587	21.087	22.087	0								0	0	0	0.94551	1	7601	7601		5.7319	0.43497	1		+		25260	11632	16122	16208	24269	24269					-0.07778082981280932
PTYSFDIGL	9	Unmodified	_PTYSFDIGL_					0	0	0			REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	REV__tr|U7SWV0|U7SWV0_FUSNUOrganicsolventtolerance-likeN-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01181PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	1012.5010986328125	1	1012.49859	1011.49131	0.77012	0.00077975	1.5516	0.001571	2.3217	0.0023508	1012.4999250857295	56.176	0.30936	55.994	55.898	56.207	-0.18261					6	5	2	0	0	0	0.60612	1	21700	21700		10.824	0	1	8101100	+		25261	17858	16123	16209	24270	24270					-0.01397341059282553
PVAKPAPVP	9	Unmodified	_PVAKPAPVP_					0	0	0		ENST00000577672.1_1_1:1656015-1656141:+|nuORF	ENST00000577672.1_1_1:1656015-1656141:+|nuORF	ENST00000577672.1_1_1:1656015-1656141:+|nuORF	MSMS	HCT116MG_D190212_S1	1	438.27313232421875	2	438.271096	874.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.44	1	55.44	54.94	55.94	0								0	0	0	0.76694	1	21289	21289		11.64	3.7301	1				25262	8933	16124	16210	24271	24271					0.08535580628085881
PVALSYPCLT	10	Unmodified	_PVALSYPCLT_					0	0	0			REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	MSMS	HCT116MG_D190212_S4	4	532.2802734375	2	532.27826	1062.54197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.122	1	33.736	33.236	34.236	-0.38523								0	0	0	0.81484	1	12447	12447		26.884	11.036	1		+		25263	16557	16125	16211	24272	24272					0.01319864994047748
PVAQLARAQTR	11	Unmodified	_PVAQLARAQTR_					0	0	0		ENST00000485887.1_1_2:25043436-25046221:-|nuORF	ENST00000485887.1_1_2:25043436-25046221:-|nuORF	ENST00000485887.1_1_2:25043436-25046221:-|nuORF	MSMS	HCT116MG_D190212_S4	4	404.238037109375	3	404.238678	1209.6942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.881	1	40.504	40.004	41.004	-0.37732								0	0	0	0.9581	1	15014	15014		2.084	0.34169	1				25264	8289	16126	16212	24273	24273					0.09774401785830378
PVATGGHV	8	Unmodified	_PVATGGHV_					0	0	0			REV__ENST00000356098.9_1_22:51065986-51066424:-|nuORF	REV__ENST00000356098.9_1_22:51065986-51066424:-|nuORF	MSMS	HCT116MG_D190212_S4	4	369.2002258300781	2	369.20067	736.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.902	1	21.683	21.183	22.183	-0.21832								0	0	0	0.8837	1	7588	7588		11.114	0	1		+		25265	14507	16127	16213	24274	24274					0.008050019746519865
PVDKNDVGY	9	Unmodified	_PVDKNDVGY_					0	0	0		ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	MULTI-MSMS	HCT116MG_D190212_S1	1	503.7459716796875	2	503.745639	1005.47673	0.43285	0.00021805	0.13435	6.7676E-05	0.5672	0.00028572	503.7459609960668	24.055	0.26115	24.055	23.889	24.15	0					10	4	3	0	0	0	0.0059958	1	8606	8606		128.93	67.575	1	7465700			25266	1085	16128	16214	24275	24275					-0.02579413207433845
PVDKNDVGY	9	Unmodified	_PVDKNDVGY_					0	0	0		ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	MULTI-MSMS	HCT116MG_D190212_S2	2	503.7453918457031	2	503.745639	1005.47673	0.55482	0.00027949	-0.080446	-4.0525E-05	0.47437	0.00023896	503.7456635700226	24.541	0.41707	24.161	23.979	24.396	-0.38003					15	7	3	0	0	0	0.0055242	1	8805	8805		133.05	64.971	1	22760000			25267	1085	16128	16214	24276	24276					-0.02579413207433845
PVDYIDQPGP	10	Unmodified	_PVDYIDQPGP_					0	0	0			REV__nc|ENSG00000050820|P56945-4|BCAR1	REV__nc|ENSG00000050820|P56945-4|BCAR1	MULTI-SECPEP	HCT116MG_D190212_S3	3	550.218017578125	2	550.766571	1099.51859	0.41614	0.0002292	0.42784	0.00023564	0.84399	0.00046484	550.7667271319829	38.289	0.15521	37.988	37.885	38.04	-0.30137					4	2	2	0	0	0	0.30812	1	14160	14160		1.6526	0.17072	1	3451300	+		25268	10623	16129	16215	24277	24277					-0.027188575189029507
PVDYIDQPGPA	11	Unmodified	_PVDYIDQPGPA_					0	0	0			REV__nc|ENSG00000050820|P56945-4|BCAR1	REV__nc|ENSG00000050820|P56945-4|BCAR1	MSMS	HCT116MG_D190212_S3	3	586.283935546875	2	586.285128	1170.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.269	1	22.269	21.769	22.769	0.00074577								0	0	0	0.93374	1	7804	7804		14.838	0.93222	1		+		25269	10623	16130	16216	24278	24278					-0.022751859731215518
PVEAGPLY	8	Unmodified	_PVEAGPLY_					0	0	0			REV__ENSG00000181449|ENST00000325404|SOX2	REV__ENSG00000181449|ENST00000325404|SOX2	MSMS	HCT116MG_D190212_S4	4	423.2235412597656	2	423.223811	844.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.267	1	28.918	28.418	29.418	-0.34921								0	0	0	0.8837	1	10561	10561		11.114	0	1		+		25270	13690	16131	16217	24279	24279					0.004630220860804002
PVEATGVP	8	Unmodified	_PVEATGVP_					0	0	0		TIGD4|p.N178Kfs*4|1|0.28|ENSG00000169989|chr4:152770471-152770472|-/T|frameshift_variant;ENSG00000169989|ENST00000304337|TIGD4	TIGD4|p.N178Kfs*4|1|0.28|ENSG00000169989|chr4:152770471-152770472|-/T|frameshift_variant	TIGD4|p.N178Kfs*4|1|0.28|ENSG00000169989|chr4:152770471-152770472|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	385.20697021484375	2	385.208161	768.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.337	1	28.988	28.488	29.488	-0.34921								0	0	0	0.8837	1	10590	10590		6.3541	0	1				25271	5108	16132	16218	24280	24280					0.008304490520004038
PVEGKGSWSA	10	Unmodified	_PVEGKGSWSA_					0	0	0			REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF	REV__ENST00000529149.1_1_11:126207958-126215505:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	509.2536926269531	2	509.253631	1016.49271	0.2103	0.0001071	0.37462	0.00019078	0.58492	0.00029787	509.25370204644946	21.53	0.7789	21.312	20.802	21.581	-0.21832					23	14	2	0	0	0	0.6277	1	7387	7387		26.268	0	1	2973800	+		25272	16298	16133	16219	24281	24281					-0.014877069705221402
PVEQSEDTGI	10	Unmodified	_PVEQSEDTGI_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.2344970703125	2	537.751118	1073.48768	0.36047	0.00019384	0.32352	0.00017397	0.68398	0.00036781	537.7515038837616	25.656	0.20714	25.287	25.187	25.394	-0.36914					5	3	2	0	0	0	0.2916	1	9272	9272		17.113	5.4726	1	7817900	+		25273	14280	16134	16220	24282	24282					-0.046120556238065546
PVFLSWQP	8	Unmodified	_PVFLSWQP_					0	0	0			REV__ENST00000569675.5_1_16:718618-720341:+|nuORF	REV__ENST00000569675.5_1_16:718618-720341:+|nuORF	MSMS	HCT116MG_D190212_S4	4	487.25091552734375	2	487.260728	972.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.92	1	28.579	28.079	29.079	-0.34059								0	0	0	0.8837	1	10421	10421		14.582	1.0738	1		+		25274	16570	16135	16221	24283	24283					0.019549902484186532
PVFRLARRRKK	11	Unmodified	_PVFRLARRRKK_					0	0	0		nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	MSMS	HCT116MG_D190212_S3	3	713.966552734375	2	713.965129	1425.9157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.784	1	45.473	44.973	45.973	-0.31094								0	0	0	0.95954	1	17152	17152		1.3295	0	1				25275	2649	16136	16222	24284	24284					0.21978306272808368
PVGDKLHPTL	10	Unmodified	_PVGDKLHPTL_					0	0	0			REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A	REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A	MSMS	HCT116MG_D190212_S4	4	538.8067626953125	2	538.808574	1075.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.519	1	49.157	48.657	49.657	-0.36213								0	0	0	0.95351	1	18370	18370		3.9444	0.3479	1		+		25276	12924	16137	16223	24285	24285					0.06781718368665679
PVGGNAPL	8	Unmodified	_PVGGNAPL_					0	0	0		SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant;SPAG17|p.L1608Ifs*4|1|0.34|ENSG00000155761|chr1:117996698-117996699|-/T|frameshift_variant;SPAG17|p.T1729Lfs*21|2|0.43|ENSG00000155761|chr1:117992642-117992642|T/-|frameshift_variant;ENSG00000155761|ENST00000336338|SPAG17	SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	SPAG17|p.Q1264Rfs*3|1|0.29|ENSG00000155761|chr1:118025357-118025357|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	362.7014465332031	2	362.703046	723.391539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.223	1	40.845	40.345	41.345	-0.37732								0	0	0	0.8837	1	15152	15152		6.3541	0	1				25277	4262	16138	16224	24286	24286					0.01877886117415528
PVGGRVPL	8	Unmodified	_PVGGRVPL_					0	0	0		SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant;SZT2|p.R3241Afs*11|1|0.33|ENSG00000198198|chr1:43448401-43448401|G/-|frameshift_variant;nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.L1644Ffs*4|1|0.36|ENSG00000198198|chr1:43431727-43431728|-/T|frameshift_variant	SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	SZT2|p.P2844Rfs*9|1|0.34|ENSG00000198198|chr1:43443669-43443669|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	397.74755859375	2	397.747788	793.481023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.389	1	31.019	30.519	31.519	-0.37026								0	0	0	0.8217	1	11390	11390		20.871	0	1				25278	6212	16139	16225	24287	24287					0.07602140796791446
PVGGVFVPERH	11	Unmodified	_PVGGVFVPERH_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MSMS	HCT116MG_D190212_S3	3	597.3247680664062	2	597.324922	1192.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.465	1	27.295	26.795	27.795	-0.16933								0	0	0	0.9414	1	9899	9899		10.824	1.4408	1		+		25279	11468	16140	16226	24288	24288					0.04667925491526148
PVGGVFVPERH	11	Unmodified	_PVGGVFVPERH_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MSMS	HCT116MG_D190212_S4	4	597.324462890625	2	597.324922	1192.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.519	1	27.198	26.698	27.698	-0.32157								0	0	0	0.9414	1	9855	9855		10.824	0.75	1		+		25280	11468	16140	16226	24289	24289					0.04667925491526148
PVGLFILVNTF	11	Unmodified	_PVGLFILVNTF_					0	0	0		SLC22A24|p.H495Pfs*31|1|0.32|ENSG00000197658|chr11:63081034-63081035|-/G|frameshift_variant;nc|ENSG00000197658|Q8N4F4-3|SLC22A24;ENSG00000197658|ENST00000612278|SLC22A24	SLC22A24|p.H495Pfs*31|1|0.32|ENSG00000197658|chr11:63081034-63081035|-/G|frameshift_variant	SLC22A24|p.H495Pfs*31|1|0.32|ENSG00000197658|chr11:63081034-63081035|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	610.3560791015625	2	610.357899	1218.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.395	1	33.013	32.513	33.513	-0.38223								0	0	0	0.94924	1	12156	12156		6.7232	0	1				25281	6165	16141	16227	24290	24290					0.10064321613685934
PVGPLYYVKLA	11	Unmodified	_PVGPLYYVKLA_					0	0	0			REV__HYDIN|p.V1454A|1|0.39|ENSG00000157423|chr16:70981540-70981540|A/G|missense_variant	REV__HYDIN|p.V1454A|1|0.39|ENSG00000157423|chr16:70981540-70981540|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	610.355712890625	2	610.357899	1218.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.238	1	38.858	38.358	39.358	-0.38055								0	0	0	0.94924	1	14410	14410		6.7232	0	1		+		25282	16892	16142	16228	24291	24291					0.10064321613708671
PVGRHESSLY	10	Unmodified	_PVGRHESSLY_					0	0	0			REV__ENST00000345496.6_1_21:46190021-46190129:-|nuORF	REV__ENST00000345496.6_1_21:46190021-46190129:-|nuORF	MSMS	HCT116MG_D190212_S1	1	382.1971435546875	3	382.196367	1143.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.482	1	29.482	28.982	29.982	0								0	0	0	0.91906	1	10777	10777		6.6304	0.89852	1		+		25283	15009	16143	16229	24292	24292					0.0012305584086789167
PVGSGYSY	8	Unmodified	_PVGSGYSY_					0	0	0			REV__IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant	REV__IGFN1|p.K745Qfs*40|1|0.22|ENSG00000163395|chr1:201217290-201217291|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	829.3729858398438	1	829.37266	828.365384	0.89835	0.00074507	0.31233	0.00025904	1.2107	0.0010041	829.3722685270128	43.78	0.3651	43.474	43.24	43.605	-0.30616					9	6	2	0	0	0	0.60268	1	16334	16334		32.117	0	1	7087400	+		25284	12919	16144	16230	24293	24293					-0.05566427844712507
PVGSSALPK	9	Unmodified	_PVGSSALPK_					0	0	0			REV__ENSG00000060709|ENST00000690449|RIMBP2	REV__ENSG00000060709|ENST00000690449|RIMBP2	MSMS	HCT116MG_D190212_S3	3	428.2503662109375	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.841	1	22.822	22.322	23.322	-0.018869								0	0	0	0.76694	1	8034	8034		11.64	0.52583	1		+		25285	10670	16145	16231	24294	24294					0.05310399868744753
PVHFLLLL	8	Unmodified	_PVHFLLLL_					0	0	0		UCN3|p.I83Sfs*49|1|0.36|ENSG00000178473|chr10:5373963-5373963|C/-|frameshift_variant;ENSG00000178473|ENST00000380433|UCN3	UCN3|p.I83Sfs*49|1|0.36|ENSG00000178473|chr10:5373963-5373963|C/-|frameshift_variant	UCN3|p.I83Sfs*49|1|0.36|ENSG00000178473|chr10:5373963-5373963|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	476.3067932128906	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.392	1	32.013	31.513	32.513	-0.37924								0	0	0	0.8837	1	11796	11796		6.3541	3.4649	1				25286	5504	16146	16232	24295	24295					0.11805030558900853
PVHRGGGPP	9	Unmodified	_PVHRGGGPP_					0	0	0			REV__ENST00000531503.5_1_11:65603108-65617212:+|nuORF	REV__ENST00000531503.5_1_11:65603108-65617212:+|nuORF	MSMS	HCT116MG_D190212_S4	4	437.2391052246094	2	437.238119	872.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.285	1	39.907	39.407	40.407	-0.37828								0	0	0	0.7676	1	14774	14774		9.3474	0	1		+		25287	16261	16147	16233	24296	24296					0.02035184505905363
PVKKVKLSR	9	Unmodified	_PVKKVKLSR_					0	0	0			REV__nc|ENSG00000087460|Q5JWF2|GNAS	REV__nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.337890625	2	527.858401	1053.70225	0.48463	0.00025582	-0.10589	-5.5895E-05	0.37874	0.00019992	527.8584109126625	60.585	1.086	60.435	60.114	61.2	-0.15007					28	20	2	0	0	0	0.26961	1	23489	23489		1.8442	0.19162	1	14039000	+		25288	17085	16148	16234	24297	24297					0.177545807732713
PVKRPRKTKAI	11	Unmodified	_PVKRPRKTKAI_					0	0	0		ENST00000491966.1_1_22:39925788-39928731:-|nuORF;ENST00000472291.1_1_22:39928247-39928743:-|nuORF;ENSG00000187051|ENST00000334678|RPS19BP1	ENST00000491966.1_1_22:39925788-39928731:-|nuORF	ENST00000491966.1_1_22:39925788-39928731:-|nuORF	MSMS	HCT116MG_D190212_S1	1	647.425048828125	2	647.427513	1292.84047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.143	1	49.143	48.643	49.643	0								0	0	0	0.95581	1	18718	18718		3.2813	0.28607	1				25289	5926	16149	16235	24298	24298					0.2057670402173244
PVLCEPLG	8	Unmodified	_PVLCEPLG_					0	0	0			REV__nc|ENSG00000137843|Q9NQU5-2|PAK6	REV__nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	HCT116MG_D190212_S2	2	827.4344482421875	1	827.433152	826.425876	1.0038	0.00083054	0.48978	0.00040526	1.4935	0.0012358	827.433683789362	31.33	0.31001	31.081	30.888	31.198	-0.24883					8	5	2	0	0	0	0.66848	1	11579	11579		26.341	0	1	10963000	+		25290	12195	16150	16236	24299	24299					0.005719662140336368
PVLKDVMDFIK	11	Unmodified	_PVLKDVMDFIK_					0	0	0		ENST00000572426.5_1_17:3937307-3974023:-|nuORF;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;ENSG00000074755|ENST00000381638|ZZEF1	ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENST00000572426.5_1_17:3937307-3974023:-|nuORF	MSMS	HCT116MG_D190212_S4	4	652.8658447265625	2	652.867774	1303.72099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.027	1	38.646	38.146	39.146	-0.38055								0	0	0	0.9465	1	14325	14325		8.1555	1.4324	1				25291	1301	16151	16237	24300	24300					0.08128329562146064
PVLKLFRTV	9	Unmodified	_PVLKLFRTV_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MSMS	HCT116MG_D190212_S4	4	358.2337341308594	3	358.234093	1071.68045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.227	1	31.852	31.352	32.352	-0.37529								0	0	0	0.76991	1	11729	11729		1.1933	0	1		+		25292	11653	16152	16238	24301	24301					0.14747776024682935
PVLKRRERN	9	Unmodified	_PVLKRRERN_					0	0	0		nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7	nc|ENSG00000165891|Q96AV8-3|E2F7	nc|ENSG00000165891|Q96AV8-3|E2F7	MULTI-MSMS	HCT116MG_D190212_S2	2	584.3565673828125	2	584.357088	1166.69962	0.79882	0.0004668	-1.2836	-0.00075006	-0.48474	-0.00028326	584.3562719612781	48.003	1.4371	47.87	46.911	48.348	-0.13281					58	27	3	0	0	0	0.70732	1	18001	18001		4.756	0.42677	1	63683000			25293	4805	16153	16239	24302	24302					0.122941253683166
PVLPRLDPE	9	Unmodified	_PVLPRLDPE_					0	0	0		ENSG00000148153|ENST00000374242|INIP	ENSG00000148153|ENST00000374242|INIP	ENSG00000148153|ENST00000374242|INIP	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2954711914062	2	518.295299	1034.57605	0.39786	0.00020621	0.33017	0.00017113	0.72803	0.00037733	518.2954049124968	42.045	0.41676	42.045	41.81	42.226	0					11	7	2	0	0	0	0.0096523	1	15849	15849		114.2	45.097	1	23175000			25294	4006	16154	16240	24303	24303					0.06014029477319127
PVLPRLDPE	9	Unmodified	_PVLPRLDPE_					0	0	0		ENSG00000148153|ENST00000374242|INIP	ENSG00000148153|ENST00000374242|INIP	ENSG00000148153|ENST00000374242|INIP	MULTI-MSMS	HCT116MG_D190212_S2	2	518.29541015625	2	518.295299	1034.57605	0.29234	0.00015152	0.60551	0.00031384	0.89786	0.00046536	518.2954647014384	42.05	0.41545	41.981	41.756	42.172	-0.068199					14	7	3	0	0	0	0.11363	1	15904	15904		55.503	19.376	1	19405000			25295	4006	16154	16240	24304	24304					0.06014029477319127
PVLRHLRRLPL	11	Unmodified	_PVLRHLRRLPL_					0	0	0			REV__SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant	REV__SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	685.4459228515625	2	685.44878	1368.88301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.816	1	49.652	49.152	50.152	-0.16369								0	0	0	0.95521	1	19077	19077		3.5965	0.31518	1		+		25296	17512	16155	16241	24305	24305					0.21332099149981332
PVLSLRRPL	9	Unmodified	_PVLSLRRPL_					0	0	0			REV__ENSG00000166126|ENST00000299155|AMN	REV__ENSG00000166126|ENST00000299155|AMN	MSMS	HCT116MG_D190212_S3	3	525.8425903320312	2	525.842751	1049.67095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.704	1	52.398	51.898	52.898	-0.30639								0	0	0	0.7676	1	19930	19930		9.3474	1.4373	1		+		25297	13089	16156	16242	24306	24306					0.1481000773917458
PVLTPLLKDLL	11	Unmodified	_PVLTPLLKDLL_					0	0	0			REV__EFCAB5|p.F843Lfs*13|1|0.49|ENSG00000176927|chr17:30057834-30057834|T/-|frameshift_variant	REV__EFCAB5|p.F843Lfs*13|1|0.49|ENSG00000176927|chr17:30057834-30057834|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	407.9330139160156	3	407.93208	1220.77441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.774	1	6.5239	6.0239	7.0239	-0.25015								0	0	0	0.9619	1	2073	2073		0.094841	0	1		+		25298	10440	16157	16243	24307	24307					0.172854503363169
PVLVRMRRSFV	11	Unmodified	_PVLVRMRRSFV_					0	0	0			REV__ENST00000407418.7_1_22:39260685-39261309:-|nuORF	REV__ENST00000407418.7_1_22:39260685-39261309:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	680.9083251953125	2	680.405724	1358.79689	0.54903	0.00037356	0.91562	0.00062299	1.4646	0.00099655	680.4062462987333	50.303	1.3414	50.303	49.905	51.246	0					42	25	2	0	0	0	0.74084	1	19168	19168		6.7232	4.2247	1	16039000	+		25299	15421	16158	16244	24308	24308					0.13184771252940664
PVLYVFFNPK	10	Unmodified	_PVLYVFFNPK_					0	0	0		nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	MSMS	HCT116MG_D190212_S1	1	612.3443603515625	2	612.344792	1222.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.708	1	59.708	59.208	60.208	0								0	0	0	0.96911	1	23012	23012		0.45834	0	1				25300	6371	16159	16245	24309	24309					0.07260052442211418
PVNGINGYNE	10	Unmodified	_PVNGINGYNE_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;MCM6|p.R771Efs*3|1|0.33|ENSG00000076003|chr2:135844583-135844583|T/-|frameshift_variant	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	HCT116MG_D190212_S2	2	359.5292053222656	3	359.505089	1075.49344	-0.19741	-7.0969E-05	-0.062143	-2.2341E-05	-0.25955	-9.3309E-05	359.5048621288552	20.536	0.21338	20.157	20.023	20.236	-0.37949					6	3	2	0	0	0	0.30788	1	7170	7170		5.0475	2.7647	1	5210000			25301	1329	16160	16246	24310	24310					-0.041289123214710344
PVPAGGPY	8	Unmodified	_PVPAGGPY_					0	0	0		ENST00000377067.8_1_13:92051146-92101018:+|nuORF	ENST00000377067.8_1_13:92051146-92101018:+|nuORF	ENST00000377067.8_1_13:92051146-92101018:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	379.1977233886719	2	379.197596	756.38064	-0.19125	-7.252E-05	0.30392	0.00011524	0.11267	4.2725E-05	379.1976451977044	32.63	0.26067	32.418	32.273	32.534	-0.21135					8	4	2	0	0	0	0.84415	1	12101	12101		6.3541	3.4649	1	20999000			25302	7521	16161	16247	24311	24311					-0.007295162568652813
PVPGCAPM	8	Unmodified	_PVPGCAPM_					0	0	0		ENST00000493924.5_1_11:2323379-2334921:+|nuORF	ENST00000493924.5_1_11:2323379-2334921:+|nuORF	ENST00000493924.5_1_11:2323379-2334921:+|nuORF	MSMS	HCT116MG_D190212_S1	1	385.7779846191406	2	386.180035	770.345517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.818	1	33.818	33.318	34.318	0								0	0	0	0.8837	1	12528	12528		2.8892	0	1				25303	8366	16162	16248	24312	24312					-0.0488421838067552
PVPLYIQQC	9	Unmodified	_PVPLYIQQC_					0	0	0			REV__LRP2|p.C2033Y|1|0.18|ENSG00000081479|chr2:169212150-169212150|C/T|missense_variant	REV__LRP2|p.C2033Y|1|0.18|ENSG00000081479|chr2:169212150-169212150|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	353.8533020019531	3	354.188044	1059.5423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.545	1	27.357	26.857	27.857	-0.18847								0	0	0	0.76902	1	9931	9931		2.4985	0.59211	1		+		25304	16984	16163	16249	24313	24313					0.014912847139157748
PVPRPRKLH	9	Unmodified	_PVPRPRKLH_					0	0	0		ENST00000553617.5_1_14:90422295-90429645:+|nuORF	ENST00000553617.5_1_14:90422295-90429645:+|nuORF	ENST00000553617.5_1_14:90422295-90429645:+|nuORF	MSMS	HCT116MG_D190212_S4	4	367.233642578125	3	367.233087	1098.67743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.744	1	32.365	31.865	32.865	-0.37924								0	0	0	0.76991	1	11938	11938		1.1933	0.41681	1				25305	8770	16164	16250	24314	24314					0.1320394569054315
PVPRSLMHSFE	11	Unmodified	_PVPRSLMHSFE_					0	0	0			REV__ENSG00000108797|ENST00000264638|CNTNAP1	REV__ENSG00000108797|ENST00000264638|CNTNAP1	MSMS	HCT116MG_D190212_S1	1	650.328857421875	2	650.329347	1298.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.645	1	38.645	38.145	39.145	0								0	0	0	0.94012	1	14474	14474		11.495	3.3392	1		+		25306	11354	16165	16251	24315	24315					0.006765310656646761
PVPSALHNSP	10	Unmodified	_PVPSALHNSP_					0	0	0			REV__ENST00000509497.1_1_4:143504625-143504763:+|nuORF	REV__ENST00000509497.1_1_4:143504625-143504763:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.7801513671875	2	509.769448	1017.52434	0.25769	0.00013136	0.55876	0.00028484	0.81645	0.0004162	509.76986954001205	21.464	0.31068	21.081	20.859	21.169	-0.38288					7	5	2	0	0	0	0.29734	1	7483	7483		5.7319	0	1	6640500	+		25307	16169	16166	16252	24316	24316					0.016282857834198694
PVPSLLVVEDL	11	Unmodified	_PVPSLLVVEDL_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MSMS	HCT116MG_D190212_S2	2	394.2333068847656	3	394.232307	1179.67509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.163	1	29.878	29.378	30.378	-0.28453								0	0	0	0.95023	1	11078	11078		5.0475	2.0523	1		+		25308	12643	16167	16253	24317	24317					0.09244007651568609
PVPTGHIA	8	Unmodified	_PVPTGHIA_					0	0	0		ENST00000029410.9_1_5:177036708-177037125:+|nuORF	ENST00000029410.9_1_5:177036708-177037125:+|nuORF	ENST00000029410.9_1_5:177036708-177037125:+|nuORF	MSMS	HCT116MG_D190212_S4	4	396.2227783203125	2	396.224146	790.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.425	1	59.147	58.647	59.647	-0.27731								0	0	0	0.8837	1	22361	22361		2.8892	0	1				25309	6711	16168	16254	24318	24318					0.030138615257897072
PVQRITQLIRR	11	Unmodified	_PVQRITQLIRR_					0	0	0			REV__ENST00000521961.1_1_6:90347059-90348185:-|nuORF	REV__ENST00000521961.1_1_6:90347059-90348185:-|nuORF	MSMS	HCT116MG_D190212_S3	3	460.6248779296875	3	460.624643	1378.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.799	1	12.861	12.361	13.361	0.06246								0	0	0	0.9619	1	4018	4018		0.094841	0	1		+		25310	10897	16169	16255	24319	24319					0.17782901045052313
PVRGPFPIIV	10	Unmodified	_PVRGPFPIIV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S3	3	547.8401489257812	2	547.839677	1093.6648	0.5304	0.00029057	0.52639	0.00028837	1.0568	0.00057895	547.8397342894561	56.146	0.20901	55.858	55.727	55.936	-0.28773					5	3	2	0	0	0	0.83158	1	21337	21337		9.3831	2.0939	1	1862200		+	25311	549	16170	16256	24320	24320					0.12171489507659317
PVRKKRRRWPW	11	Unmodified	_PVRKKRRRWPW_					0	0	0			REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	521.9851684570312	3	522.319777	1563.9375	0.43399	0.00022668	0.2545	0.00013293	0.68849	0.00035961	522.3199719923397	54.649	0.52101	54.325	53.984	54.505	-0.32348					14	9	2	0	0	0	0.36631	1	20395	20395		0	0	1	3475400	+		25312	15746	16171	16257	24321	24321					0.1780911102139271
PVRKKRRRWPW	11	Unmodified	_PVRKKRRRWPW_					0	0	0			REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	522.319777	1563.9375	0.29315	0.00015312	-0.82396	-0.00043037	-0.53081	-0.00027725	522.3194062139007	54.68	0.47046	54.384	54.138	54.609	-0.29587	0.029221	-0.00071271	NaN	0	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1130300	+		25313	15746	16171	16257							0.1780911102139271
PVRLLTRFRRR	11	Unmodified	_PVRLLTRFRRR_					0	0	0			REV__ENST00000505081.5_1_5:176940412-176942272:-|nuORF	REV__ENST00000505081.5_1_5:176940412-176942272:-|nuORF	MSMS	HCT116MG_D190212_S3	3	490.64703369140625	3	490.647782	1468.92152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.742	1	13.817	13.317	14.317	0.074899								0	0	0	0.9619	1	4378	4378		0.094841	0.094841	1		+		25314	16136	16172	16258	24322	24322					0.20581404784456936
PVRLTKIINQL	11	Unmodified	_PVRLTKIINQL_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MSMS	HCT116MG_D190212_S3	3	432.2800598144531	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.78	1	51.471	50.971	51.971	-0.30927								0	0	0	0.9619	1	19558	19558		0.094841	0	1		+		25315	10675	16173	16259	24323	24323					0.17810175690715369
PVRQLLHVEAP	11	Unmodified	_PVRQLLHVEAP_					0	0	0			REV__ENST00000413368.5_1_7:1126798-1127904:+|nuORF	REV__ENST00000413368.5_1_7:1126798-1127904:+|nuORF	MSMS	HCT116MG_D190212_S3	3	629.7984619140625	2	629.866954	1257.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.083	1	33.789	33.289	34.289	-0.29419								0	0	0	0.95113	1	12533	12533		5.7319	0	1		+		25316	15457	16174	16260	24324	24324					0.10080456588434572
PVSALPAPAL	10	Unmodified	_PVSALPAPAL_					0	0	0			REV__ENSG00000130940|ENST00000377022|CASZ1	REV__ENSG00000130940|ENST00000377022|CASZ1	MSMS	HCT116MG_D190212_S3	3	468.2818908691406	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.369	1	26.22	25.72	26.72	-0.14924								0	0	0	0.92272	1	9457	9457		10.824	0	1		+		25317	11946	16175	16261	24325	24325					0.07887545936932838
PVSELSARPAP	11	Unmodified	_PVSELSARPAP_					0	0	0			REV__TNS1|p.P973Rfs*13|2|0.28|ENSG00000079308|chr2:217831535-217831535|G/-|frameshift_variant	REV__TNS1|p.P973Rfs*13|2|0.28|ENSG00000079308|chr2:217831535-217831535|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	562.30908203125	2	562.308938	1122.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.554	1	33.264	32.764	33.764	-0.29013								0	0	0	0.86874	1	12319	12319		24.021	0	1		+		25318	10849	16176	16262	24326	24326					0.04692513017721467
PVSEPSTEP	9	Unmodified	_PVSEPSTEP_					0	0	0			REV__ENSG00000138449|ENST00000261024|SLC40A1	REV__ENSG00000138449|ENST00000261024|SLC40A1	MULTI-MSMS	HCT116MG_D190212_S3	3	471.72412109375	2	471.724372	941.434192	0.11674	5.5071E-05	0.45024	0.00021239	0.56698	0.00026746	471.7244011293704	36.719	0.57235	36.418	36.145	36.717	-0.30113					18	10	2	0	0	0	0.13706	1	13574	13574		50.855	0	1	3028300	+		25319	12227	16177	16263	24327	24327					-0.038868083356533134
PVSEPSTEP	9	Unmodified	_PVSEPSTEP_					0	0	0			REV__ENSG00000138449|ENST00000261024|SLC40A1	REV__ENSG00000138449|ENST00000261024|SLC40A1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	471.724372	941.434192	0.34046	0.0001606	-0.23942	-0.00011294	0.10104	4.7664E-05	471.7242939172951	36.484	0.5174	36.356	36.226	36.744	-0.12799	-0.03112	-0.00048082	NaN	50.855	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6283800	+		25320	12227	16177	16263							-0.038868083356533134
PVSEPSTEP	9	Unmodified	_PVSEPSTEP_					0	0	0			REV__ENSG00000138449|ENST00000261024|SLC40A1	REV__ENSG00000138449|ENST00000261024|SLC40A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	471.724372	941.434192	0.11674	5.5071E-05	0.45024	0.00021239	0.56698	0.00026746	471.7244011293704	36.719	0.57235	36.418	36.145	36.717	-0.30113	0.03112	0.00016983	NaN	50.855	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3028300	+		25321	12227	16177	16263							-0.038868083356533134
PVSSENFTSPY	11	Unmodified	_PVSSENFTSPY_					0	0	0		FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant;nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant	FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	613.8257446289062	2	614.280043	1226.54553	0.30103	0.00018492	0.21309	0.0001309	0.51412	0.00031581	614.2798079242889	40.015	0.31142	39.943	39.79	40.102	-0.072838					8	5	2	0	0	0	0.3506	1	15142	15142		11.495	2.1116	1	6844300			25322	2611	16178	16264	24328	24328					-0.05867793698348578
PVSTSLGEGP	10	Unmodified	_PVSTSLGEGP_					0	0	0			REV__ENSG00000198934|ENST00000361470|MAGEE1	REV__ENSG00000198934|ENST00000361470|MAGEE1	MSMS	HCT116MG_D190212_S4	4	472.2402648925781	2	472.24019	942.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.745	1	26.444	25.944	26.944	-0.30087								0	0	0	0.86471	1	9542	9542		20.454	4.6064	1		+		25323	14169	16179	16265	24329	24329					-0.007708155816999351
PVTGDKFSL	9	Unmodified	_PVTGDKFSL_					0	0	0		ENST00000602743.1_1_17:13801940-13972716:-|nuORF	ENST00000602743.1_1_17:13801940-13972716:-|nuORF	ENST00000602743.1_1_17:13801940-13972716:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	964.5140380859375	1	963.514573	962.507297	0.69156	0.00066633	-0.63618	-0.00061296	0.055388	5.3367E-05	963.5143245322828	57.879	0.261	57.704	57.469	57.73	-0.17494					9	4	3	0	0	0	0.47829	1	22332	22332		18.135	0	1	22858000			25324	9098	16180	16266	24330	24330					0.02454365177618456
PVTKVPVA	8	Unmodified	_PVTKVPVA_					0	0	0			REV__ENSG00000165566|ENST00000515384|AMER2	REV__ENSG00000165566|ENST00000515384|AMER2	MSMS	HCT116MG_D190212_S1	1	405.7598876953125	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.867	1	41.867	41.367	42.367	0								0	0	0	0.8837	1	15776	15776		7.2892	0.56607	1		+		25325	13062	16181	16267	24331	24331					0.08871891736748694
PVTTATVSSL	10	Unmodified	_PVTTATVSSL_					0	0	0		nc|ENSG00000130940|Q86V15-2|CASZ1;CASZ1|p.Y1191*|1|0.04|ENSG00000130940|chr1:10646251-10646251|G/-|frameshift_variant;ENSG00000130940|ENST00000377022|CASZ1	nc|ENSG00000130940|Q86V15-2|CASZ1	nc|ENSG00000130940|Q86V15-2|CASZ1	MSMS	HCT116MG_D190212_S2	2	488.16693115234375	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.852	1	35.72	35.22	36.22	-0.13118								0	0	0	0.65378	1	13388	13388		39.957	20.7	1				25326	333	16182	16268	24332	24332					0.040143304864727725
PVTTATVSSL	10	Unmodified	_PVTTATVSSL_					0	0	0		nc|ENSG00000130940|Q86V15-2|CASZ1;CASZ1|p.Y1191*|1|0.04|ENSG00000130940|chr1:10646251-10646251|G/-|frameshift_variant;ENSG00000130940|ENST00000377022|CASZ1	nc|ENSG00000130940|Q86V15-2|CASZ1	nc|ENSG00000130940|Q86V15-2|CASZ1	MSMS	HCT116MG_D190212_S4	4	488.72406005859375	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.024	1	35.638	35.138	36.138	-0.38558								0	0	0	0.86471	1	13167	13167		20.454	1.1966	1				25327	333	16182	16268	24333	24333					0.040143304864727725
PVTVLAPP	8	Unmodified	_PVTVLAPP_					0	0	0		ENST00000337620.8_1_7:26241072-26246069:+|nuORF	ENST00000337620.8_1_7:26241072-26246069:+|nuORF	ENST00000337620.8_1_7:26241072-26246069:+|nuORF	MSMS	HCT116MG_D190212_S3	3	397.2444152832031	2	397.244547	792.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.626	1	32.34	31.84	32.84	-0.28511								0	0	0	0.73047	1	11964	11964		28.173	7.302	1				25328	7198	16183	16269	24334	24334					0.07000202845404147
PVTVLAPP	8	Unmodified	_PVTVLAPP_					0	0	0		ENST00000337620.8_1_7:26241072-26246069:+|nuORF	ENST00000337620.8_1_7:26241072-26246069:+|nuORF	ENST00000337620.8_1_7:26241072-26246069:+|nuORF	MSMS	HCT116MG_D190212_S3	3	397.2439270019531	2	397.244547	792.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.131	1	32.846	32.346	33.346	-0.28511								0	0	0	0.8837	1	12158	12158		14.582	1.0738	1				25329	7198	16183	16269	24335	24335					0.07000202845404147
PVVEEAAAP	9	Unmodified	_PVVEEAAAP_					0	0	0			REV__nc|ENSG00000171992|Q8N3V7-3|SYNPO	REV__nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	HCT116MG_D190212_S3	3	442.2288818359375	2	441.732	881.449448	0.28322	0.00012511	0.20055	8.8589E-05	0.48377	0.0002137	441.7319316265961	29.541	0.52686	29.304	29.083	29.61	-0.23655					16	9	3	0	0	0	0.54041	1	10671	10671		14.582	4.3983	1	18731000	+		25330	13371	16184	16270	24336	24336					0.003981032521778616
PVVFLVVAM	9	Unmodified	_PVVFLVVAM_					0	0	0			REV__nc|ENSG00000126251|O15529|GPR42	REV__nc|ENSG00000126251|O15529|GPR42	MSMS	HCT116MG_D190212_S3	3	487.7906188964844	2	487.790807	973.56706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.284	1	43.977	43.477	44.477	-0.30759								0	0	0	0.7676	1	16550	16550		9.3474	0	1		+		25331	11837	16185	16271	24337	24337					0.07921964587308139
PVVGARRG	8	Unmodified	_PVVGARRG_					0	0	0		ENSG00000085644|ENST00000396878|ZNF213;nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF	ENSG00000085644|ENST00000396878|ZNF213	ENSG00000085644|ENST00000396878|ZNF213	MULTI-MSMS	HCT116MG_D190212_S1	1	406.24853515625	2	406.248486	810.48242	-0.14842	-6.0294E-05	0.45408	0.00018447	0.30567	0.00012418	406.2485957910387	47.672	1.0372	47.672	47.217	48.254	0					44	20	4	0	0	0	0.8506	1	18079	18079		5.2307	0	1	2523000000			25332	1456	16186	16272	24338	24338					0.06959774885569914
PVVGARRG	8	Unmodified	_PVVGARRG_					0	0	0		ENSG00000085644|ENST00000396878|ZNF213;nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF	ENSG00000085644|ENST00000396878|ZNF213	ENSG00000085644|ENST00000396878|ZNF213	MULTI-MSMS	HCT116MG_D190212_S4	4	408.2518005371094	2	406.248486	810.48242	-0.011726	-4.7637E-06	0.091556	3.7194E-05	0.07983	3.2431E-05	406.2485168917951	48.621	2.9455	48.254	47.151	50.096	-0.36727					277	73	7	0	0	0	0.86564	2	17900	17662;17900		2.5775	0	1	1184900000			25333	1456	16186	16272	24339;24340	24340					0.06959774885569914
PVVGARRG	8	Unmodified	_PVVGARRG_					0	0	0		ENSG00000085644|ENST00000396878|ZNF213;nc|ENSG00000085644|O14771-2|ZNF213;ENST00000576863.1_1_16:3188364-3191345:+|nuORF	ENSG00000085644|ENST00000396878|ZNF213	ENSG00000085644|ENST00000396878|ZNF213	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	406.248486	810.48242	0.1014	4.1194E-05	-0.01233	-5.0091E-06	0.089072	3.6185E-05	406.2484206864925	48.151	1.7767	48.018	47.584	49.361	-0.13281	0.17337	-7.8256E-05	NaN	5.2307	63	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1488699999.9999998			25334	1456	16186	16272							0.06959774885569914
PVVLRKRRQR	10	Unmodified	_PVVLRKRRQR_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.T1375Hfs*28|1|0.18|ENSG00000138246|chr3:132496626-132496626|A/-|frameshift_variant;DNAJC13|p.G1667Vfs*22|1|0.33|ENSG00000138246|chr3:132505410-132505410|A/-|frameshift_variant	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MSMS	HCT116MG_D190212_S2	2	654.4301147460938	2	654.428379	1306.8422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.599	1	37.496	36.996	37.996	-0.10318								0	0	0	0.95351	1	14099	14099		3.9444	0.3479	1				25335	3545	16187	16273	24341	24341					0.20105757830356197
PVVLRRNP	8	Unmodified	_PVVLRRNP_					0	0	0			REV__ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant	REV__ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	475.79791259765625	2	475.798343	949.582134	0.10064	4.7883E-05	0.12315	5.8596E-05	0.22379	0.00010648	475.79833425191623	60.774	1.1331	60.774	60.595	61.728	0					37	21	3	0	0	0	0.86564	1	23448	23448		2.5775	0	1	143810000	+		25336	9856	16188	16274	24342	24342					0.10532592499509974
PWPPPGAS	8	Unmodified	_PWPPPGAS_					0	0	0			REV__ENSG00000205899|ENST00000391429|BHLHA9	REV__ENSG00000205899|ENST00000391429|BHLHA9	MULTI-MSMS	HCT116MG_D190212_S2	2	404.70306396484375	2	404.703046	807.391539	-0.19159	-7.7536E-05	0.22928	9.2791E-05	0.037694	1.5255E-05	404.70301952584924	29.886	0.36146	29.586	29.444	29.805	-0.30095					8	6	2	0	0	0	0.73076	1	10986	10986		19.439	4.8573	1	26665000	+		25337	14236	16189	16275	24343	24343					-0.019861138825717717
PWQMLACC	8	Unmodified	_PWQMLACC_					0	0	0		POLRMT|p.T894M|1|0.34|ENSG00000099821|chr19:620447-620447|G/A|missense_variant	POLRMT|p.T894M|1|0.34|ENSG00000099821|chr19:620447-620447|G/A|missense_variant	POLRMT|p.T894M|1|0.34|ENSG00000099821|chr19:620447-620447|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	476.1986999511719	2	476.197902	950.38125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7903	1	4.6716	4.1716	5.1716	-0.11871								0	0	0	0.8837	1	1515	1515		0.79363	0	1				25338	9762	16190	16276	24344	24344					-0.09592504195325091
PWWGSRCKDW	10	Unmodified	_PWWGSRCKDW_					0	0	0			REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF	REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF	MSMS	HCT116MG_D190212_S1	1	440.8703918457031	3	440.869597	1319.58696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.09	1	14.09	13.59	14.59	0								0	0	0	0.96911	1	4594	4594		0.15932	0	1		+		25339	14583	16191	16277	24345	24345					-0.0600489142002516
PYFHHVRHTP	10	Unmodified	_PYFHHVRHTP_					0	0	0			REV__nc|ENSG00000272391|A8CG34|POM121C	REV__nc|ENSG00000272391|A8CG34|POM121C	MSMS	HCT116MG_D190212_S1	1	430.8882141113281	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.346	1	63.346	62.846	63.846	0								0	0	0	0.96804	1	24472	24472		0.69767	0.19171	1		+		25340	17317	16192	16278	24346	24346					0.008538634428759906
PYFIKTKLFI	10	Unmodified	_PYFIKTKLFI_					0	0	0			REV__CCDC15|p.L510Cfs*138|1|0.15|ENSG00000149548|chr11:124987750-124987750|T/-|frameshift_variant	REV__CCDC15|p.L510Cfs*138|1|0.15|ENSG00000149548|chr11:124987750-124987750|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	635.3839111328125	2	635.383917	1268.75328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.799	1	48.799	48.299	49.299	0								0	0	0	0.96291	1	18578	18578		1.8442	0	1		+		25341	10109	16193	16279	24347	24347					0.12965485027439172
PYFSPVPAGE	10	Unmodified	_PYFSPVPAGE_					0	0	0			REV__ENST00000465076.5_1_10:75531037-75531319:+|nuORF	REV__ENST00000465076.5_1_10:75531037-75531319:+|nuORF	MSMS	HCT116MG_D190212_S4	4	532.2565307617188	2	532.258382	1062.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.567	1	23.319	22.819	23.819	-0.24775								0	0	0	0.80906	1	8258	8258		27.629	1.3607	1		+		25342	15814	16194	16280	24348	24348					-0.026539386850117808
PYISSRDHIW	10	Unmodified	_PYISSRDHIW_					0	0	0		LRP12|p.Q134R|1|0.13|ENSG00000147650|chr8:104499391-104499391|T/C|missense_variant	LRP12|p.Q134R|1|0.13|ENSG00000147650|chr8:104499391-104499391|T/C|missense_variant	LRP12|p.Q134R|1|0.13|ENSG00000147650|chr8:104499391-104499391|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	637.32275390625	2	637.319837	1272.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.314	1	33.121	32.621	33.621	-0.19297								0	0	0	0.85468	1	12356	12356		21.747	7.8406	1				25343	9303	16195	16281	24349	24349					-0.0002868223373297951
PYLLLLKLP	9	Unmodified	_PYLLLLKLP_					0	0	0		ENST00000438189.6_1_11:67226126-67226375:+|nuORF	ENST00000438189.6_1_11:67226126-67226375:+|nuORF	ENST00000438189.6_1_11:67226126-67226375:+|nuORF	MSMS	HCT116MG_D190212_S4	4	357.2383728027344	3	357.238844	1068.6947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.009	1	36.624	36.124	37.124	-0.38486								0	0	0	0.77018	1	13565	13565		0.26902	0	1				25344	7895	16196	16282	24350	24350					0.16310428452970882
PYPARGYSFVE	11	Unmodified	_PYPARGYSFVE_					0	0	0			REV__nc|ENSG00000007264|P42679-3|MATK	REV__nc|ENSG00000007264|P42679-3|MATK	MSMS	HCT116MG_D190212_S4	4	643.0252685546875	2	643.31422	1284.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.948	1	43.574	43.074	44.074	-0.37373								0	0	0	0.94416	1	16173	16173		9.3831	0.63772	1		+		25345	10493	16197	16283	24351	24351					-0.01703504327861083
PYPGMPVDSK	10	Unmodified	_PYPGMPVDSK_					0	0	0		ENSG00000157404|ENST00000288135|KIT;nc|ENSG00000157404|P10721-2|KIT;nc|ENSG00000157404|P10721-4|KIT	ENSG00000157404|ENST00000288135|KIT	ENSG00000157404|ENST00000288135|KIT	MSMS	HCT116MG_D190212_S3	3	545.7639770507812	2	545.765517	1089.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.876	1	27.687	27.187	28.187	-0.18847								0	0	0	0.83705	1	10065	10065		24.021	2.2739	1				25346	4325	16198	16284	24352	24352					-0.02469609528361616
PYPPLHRFHPS	11	Unmodified	_PYPPLHRFHPS_					0	0	0			REV__DROSHA|p.E310Sfs*42|1|0.42|ENSG00000113360|chr5:31521143-31521143|T/-|frameshift_variant	REV__DROSHA|p.E310Sfs*42|1|0.42|ENSG00000113360|chr5:31521143-31521143|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	449.9048156738281	3	449.903406	1346.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.25792	1	-0.0066381	-0.50664	0.49336	-0.26456								0	0	0	0.96141	1	92	92		0.094841	0	1		+		25347	10411	16199	16285	24353	24353					0.02891303274168422
PYQDHDQPP	9	Unmodified	_PYQDHDQPP_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-SECPEP	HCT116MG_D190212_S2	2	548.2792358398438	2	548.738345	1095.46214	0.36509	0.00020034	0.2206	0.00012105	0.58569	0.00032139	549.2397784138466	37.033	0.41247	36.918	36.653	37.066	-0.11478					12	7	3	0	0	0	0.2622	1	13763	13763		4.756	0.42677	1	12359000			25348	1963	16200	16286	24354	24354					-0.08177485355577119
PYSFELSAP	9	Unmodified	_PYSFELSAP_					0	0	0			REV__ENST00000603175.1_1_2:74731144-74731258:+|nuORF	REV__ENST00000603175.1_1_2:74731144-74731258:+|nuORF	MSMS	HCT116MG_D190212_S3	3	505.74481201171875	2	505.745108	1009.47566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.542	1	30.293	29.793	30.793	-0.24946								0	0	0	0.11425	1	11126	11126		53.576	2.7205	1		+		25349	16761	16201	16287	24355	24355					-0.02869627576330913
PYSFLFMNI	9	Unmodified	_PYSFLFMNI_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MSMS	HCT116MG_D190212_S1	1	377.85711669921875	3	377.856294	1130.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.357	1	26.357	25.857	26.857	0								0	0	0	0.7689	1	9520	9520		5.2969	3.2109	1		+		25350	10573	16202	16288	24356	24356					-0.012998311433193521
PYSLDAARAK	10	Unmodified	_PYSLDAARAK_					0	0	0		tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	tr|U7SUB3|U7SUB3_FUSNUButyryl-CoAdehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01365PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	546.2633056640625	2	546.29583	1090.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.181	1	15.181	14.681	15.681	0								0	0	0	0.88261	1	5025	5025		18.146	3.3081	1				25351	18472	16203	16289	24357	24357					0.03544243846204154
PYYISFHWAL	10	Unmodified	_PYYISFHWAL_					0	0	0			REV__ENSG00000105131|ENST00000221730|EPHX3	REV__ENSG00000105131|ENST00000221730|EPHX3	MSMS	HCT116MG_D190212_S2	2	432.58929443359375	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0363	1	2.996	2.496	3.496	-0.040353								0	0	0	0.97116	1	970	970		0	0	1		+		25352	11235	16204	16290	24358	24358					-0.0020970859720819135
PYYISFHWAL	10	Unmodified	_PYYISFHWAL_					0	0	0			REV__ENSG00000105131|ENST00000221730|EPHX3	REV__ENSG00000105131|ENST00000221730|EPHX3	MSMS	HCT116MG_D190212_S2	2	432.8853454589844	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.078	1	3.0376	2.5376	3.5376	-0.040353								0	0	0	0.97116	1	981	981		0	0	1		+		25353	11235	16204	16290	24359	24359					-0.0020970859720819135
PYYISFHWAL	10	Unmodified	_PYYISFHWAL_					0	0	0			REV__ENSG00000105131|ENST00000221730|EPHX3	REV__ENSG00000105131|ENST00000221730|EPHX3	MSMS	HCT116MG_D190212_S2	2	432.88531494140625	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9078	1	6.7105	6.2105	7.2105	-0.19725								0	0	0	0.97116	1	2175	2175		0	0	1		+		25354	11235	16204	16290	24360	24360					-0.0020970859720819135
QAADFTLKVE	10	Unmodified	_QAADFTLKVE_					0	0	0		ENST00000219771.7_1_16:29690360-29708729:+|nuORF;ENSG00000103485|ENST00000395384|QPRT	ENST00000219771.7_1_16:29690360-29708729:+|nuORF	ENST00000219771.7_1_16:29690360-29708729:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	561.30712890625	2	561.295496	1120.57644	0.61638	0.00034597	-0.91595	-0.00051412	-0.29957	-0.00016815	561.7967217141853	34.408	0.20738	34.233	34.124	34.331	-0.17512					5	3	2	0	0	0	0.28573	1	12820	12820		20.415	6.7997	1	6605700			25355	1895	16205	16291	24361	24361					0.02097404406526948
QAAKLGPL	8	Unmodified	_QAAKLGPL_					0	0	0			REV__ENSG00000074181|ENST00000263388|NOTCH3	REV__ENSG00000074181|ENST00000263388|NOTCH3	MSMS	HCT116MG_D190212_S4	4	399.24603271484375	2	399.247621	796.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.695	1	49.333	48.833	49.833	-0.36213								0	0	0	0.8837	1	18442	18442		5.7604	0	1		+		25356	10796	16206	16292	24362	24362					0.07430721076946156
QACLSCCAGP	10	Unmodified	_QACLSCCAGP_					0	0	0			REV__ENSG00000132207|ENST00000251303|SLX1A	REV__ENSG00000132207|ENST00000251303|SLX1A	MULTI-MSMS	HCT116MG_D190212_S3	3	476.68768310546875	2	476.687898	951.361243	-0.061263	-2.9203E-05	-0.0011564	-5.5125E-07	-0.062419	-2.9755E-05	476.687802610943	17.412	1.3009	17.493	17.169	18.47	0.081358					53	24	3	0	0	0	0.58749	1	5814	5814		29.082	29.082	1	15859000	+		25357	11983	16207	16293	24363	24363					-0.1163829992593719
QADQAQCSYAG	11	Unmodified	_QADQAQCSYAG_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	HCT116MG_D190212_S4	4	571.7349853515625	2	571.23257	1140.45059	0.53302	0.00030448	1.9311	0.0011031	2.4641	0.0014076	571.2342017555503	22.529	0.4163	22.296	22.138	22.554	-0.23312					13	7	3	0	0	0	0.35938	1	7930	7930		11.495	2.7493	1	4346800	+		25358	10959	16208	16294	24364	24364					-0.11402050441233769
QAECLLLGQ	9	Unmodified	_QAECLLLGQ_					0	0	0		POLQ|p.T546Sfs*41|1|0.05|ENSG00000051341|chr3:121510219-121510220|-/GGCTACTAGA|frameshift_variant;POLQ|p.F670Sfs*11|1|0.33|ENSG00000051341|chr3:121498621-121498621|A/-|frameshift_variant;POLQ|p.K1304Lfs*11|1|0.06|ENSG00000051341|chr3:121489022-121489023|-/GAAGGAGT|frameshift_variant;POLQ|p.L1430*|2|0.34|ENSG00000051341|chr3:121488642-121488642|A/-|frameshift_variant;POLQ|p.K1535Nfs*4|1|0.38|ENSG00000051341|chr3:121488326-121488326|T/-|frameshift_variant;POLQ|p.Y2285Ifs*7|1|0.44|ENSG00000051341|chr3:121467633-121467633|A/-|frameshift_variant;POLQ|p.H2496Tfs*59|1|0.11|ENSG00000051341|chr3:121436179-121436179|G/-|frameshift_variant;ENSG00000051341|ENST00000264233|POLQ	POLQ|p.T546Sfs*41|1|0.05|ENSG00000051341|chr3:121510219-121510220|-/GGCTACTAGA|frameshift_variant	POLQ|p.T546Sfs*41|1|0.05|ENSG00000051341|chr3:121510219-121510220|-/GGCTACTAGA|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	486.959228515625	2	487.75241	973.490267	0.10894	5.3135E-05	-0.092079	-4.4912E-05	0.01686	8.2233E-06	487.7526080939897	53.748	0.20688	53.558	53.429	53.636	-0.1894					6	3	2	0	0	0	0.2493	1	20706	20706		8.1555	1.4324	1	11058000			25359	1056	16209	16295	24365	24365					0.0024612130017658274
QAEEKTTYM	9	Oxidation (M)	_QAEEKTTYM(Oxidation (M))_		QAEEKTTYM(1)		QAEEKTTYM(42)	0	0	1			REV__RBM46|p.N183Kfs*10|1|0.27|ENSG00000151962|chr4:154798202-154798203|-/A|frameshift_variant	REV__RBM46|p.N183Kfs*10|1|0.27|ENSG00000151962|chr4:154798202-154798203|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1116.48828125	1	1116.48777	1115.48049	0.17993	0.00020089	0.093878	0.00010481	0.27381	0.0003057	1116.4874916878484	34.706	0.31143	34.409	34.233	34.544	-0.29707					10	5	3	0	0	0	0.19461	1	12790	12790		41.84	19.103	1	6581300	+		25360	12618	16210	16296	24366	24366		156			-0.07263111495876728
QAEEKTTYM	9	Oxidation (M)	_QAEEKTTYM(Oxidation (M))_					0	0	1			REV__RBM46|p.N183Kfs*10|1|0.27|ENSG00000151962|chr4:154798202-154798203|-/A|frameshift_variant	REV__RBM46|p.N183Kfs*10|1|0.27|ENSG00000151962|chr4:154798202-154798203|-/A|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1116.48777	1115.48049	0.17993	0.00020089	0.093878	0.00010481	0.27381	0.0003057	1116.4874916878484	34.706	0.31143	34.409	34.233	34.544	-0.29707	0.05179	-7.977E-08	NaN	41.84	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6581300	+		25361	12618	16210	16296				156			-0.07263111495876728
QAEELELKA	9	Unmodified	_QAEELELKA_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-SECPEP	HCT116MG_D190212_S4	4	516.30126953125	2	515.774396	1029.53424	0.15514	8.0015E-05	-0.30042	-0.00015495	-0.14529	-7.4936E-05	515.7741440157657	32.043	0.41527	31.668	31.33	31.745	-0.37529					13	7	2	0	0	0	0.23771	1	11679	11679		10.074	0	1	6992200	+		25362	11738	16211	16297	24367	24367					0.02065428998139396
QAEGPNRLLY	10	Unmodified	_QAEGPNRLLY_					0	0	0		ENST00000563748.5_1_15:34651330-34651973:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	ENST00000563748.5_1_15:34651330-34651973:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	580.8064575195312	2	580.806562	1159.59857	0.37358	0.00021698	0.23718	0.00013776	0.61077	0.00035474	580.806641639691	38.709	0.4757	38.624	38.33	38.806	-0.084618					13	8	2	0	0	0	0.027339	1	14559	14559		107.1	75.062	1	19772000			25363	5421	16212	16298	24368	24368					0.025156288749712985
QAEKDGPDQP	10	Unmodified	_QAEKDGPDQP_					0	0	0			REV__nc|ENSG00000182707|P58550|FXYD6P3	REV__nc|ENSG00000182707|P58550|FXYD6P3	MULTI-MSMS	HCT116MG_D190212_S1	1	542.7491455078125	2	542.74891	1083.48327	0.61198	0.00033215	0.34864	0.00018923	0.96062	0.00052138	542.7487656934662	20.378	0.46948	20.378	20.07	20.54	0					11	8	2	0	0	0	0.37752	1	7161	7161		43.772	9.3707	1	3316200	+		25364	17238	16213	16299	24369	24369					-0.055135200467020695
QAEKDGPDQP	10	Unmodified	_QAEKDGPDQP_					0	0	0			REV__nc|ENSG00000182707|P58550|FXYD6P3	REV__nc|ENSG00000182707|P58550|FXYD6P3	MULTI-SECPEP	HCT116MG_D190212_S1	1	543.3502807617188	2	542.74891	1083.48327	0.61198	0.00033215	0.34864	0.00018923	0.96062	0.00052138	542.7487656934662	20.378	0.46948	20.378	20.07	20.54	0					11	8	2	0	0	0	0.23613	1	7071	7071		37.075	7.9931	1	3316200	+		25365	17238	16213	16299	24370	24370					-0.055135200467020695
QAEKQTKE	8	Unmodified	_QAEKQTKE_					0	0	0		ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant;nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	ABCF1|p.P618Hfs*13|1|0.36|ENSG00000204574|chr6:30586268-30586268|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	480.74090576171875	2	481.251089	960.487624	0.19339	9.3071E-05	0.42302	0.00020358	0.61642	0.00029665	481.2511109116374	20.642	0.31742	20.262	20.076	20.394	-0.37949					7	5	2	0	0	0	0.28869	1	7164	7164		7.9102	0	1	9831300			25366	13	16214	16300	24371	24371					0.005799891668516466
QAESPLGIRP	10	Unmodified	_QAESPLGIRP_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000514104.5_1_5:145522433-145523105:-|nuORF;ENST00000512412.1_1_5:145519224-145523084:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	534.2965087890625	2	534.29583	1066.57711	0.50073	0.00026754	-0.40034	-0.0002139	0.10039	5.364E-05	534.2956085858352	33.359	0.57083	33.359	32.985	33.556	0					18	10	2	0	0	0	0.35312	1	12338	12338		45.74	7.5643	1	6028100			25367	3249	16215	16301	24372	24372					0.04648243846236255
QAESPLGIRP	10	Unmodified	_QAESPLGIRP_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000514104.5_1_5:145522433-145523105:-|nuORF;ENST00000512412.1_1_5:145519224-145523084:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	535.3104248046875	2	534.29583	1066.57711	0.4896	0.00026159	-0.097409	-5.2045E-05	0.39219	0.00020954	534.295756923485	33.769	0.81624	33.478	32.955	33.771	-0.29013					35	16	3	0	0	0	0.59588	1	12339	12339		28.495	2.2264	1	30614000			25368	3249	16215	16301	24373	24373					0.04648243846236255
QAESPLGIRP	10	Unmodified	_QAESPLGIRP_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000514104.5_1_5:145522433-145523105:-|nuORF;ENST00000512412.1_1_5:145519224-145523084:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	HCT116MG_D190212_S4	4	534.2963256835938	2	534.29583	1066.57711	0.60301	0.00032218	-0.38638	-0.00020644	0.21663	0.00011574	534.2955213776195	33.837	0.67374	33.453	33.051	33.725	-0.38426					30	13	3	0	0	0	0.39839	1	12272	12272		42.312	11.044	1	8868600			25369	3249	16215	16301	24374	24374					0.04648243846236255
QAETGCDCIEN	11	Unmodified	_QAETGCDCIEN_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MSMS	HCT116MG_D190212_S3	3	591.722900390625	2	591.72372	1181.43289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.472	1	21.49	20.99	21.99	0.018446								0	0	0	0.89672	1	7484	7484		20.415	2.2682	1		+		25370	14059	16216	16302	24375	24375					-0.15057133758386954
QAGAPQGR	8	Unmodified	_QAGAPQGR_					0	0	0		nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	HCT116MG_D190212_S4	4	784.4076538085938	1	784.406026	783.39875	1.0672	0.00083711	1.7778	0.0013945	2.845	0.0022316	784.407344317525	57.122	0.31232	56.821	56.623	56.935	-0.30039					8	5	2	0	0	0	0.8506	1	21454	21454		5.2307	0	1	2103200			25371	9497	16217	16303	24376	24376					-0.0016138128214606695
QAGAPQGR	8	Unmodified	_QAGAPQGR_					0	0	0		nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MATCH	HCT116MG_D190212_S1	1		1	784.406026	783.39875	0.82365	0.00064608	1.9492	0.001529	2.7729	0.0021751	784.4073976439346	56.608	0.15463	56.608	56.531	56.686	0	-0.15846	0.00024075	NaN	5.2307	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6415200			25372	9497	16217	16303							-0.0016138128214606695
QAGAPQGR	8	Unmodified	_QAGAPQGR_					0	0	0		nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	784.406026	783.39875	0.85205	0.00066835	2.3534	0.001846	3.2055	0.0025144	784.4082075404664	57.099	0.31285	56.82	56.677	56.99	-0.27913	0.052877	0.00055781	NaN	5.2307	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	846690			25373	9497	16217	16303							-0.0016138128214606695
QAGLAAGPV	9	Unmodified	_QAGLAAGPV_					0	0	0			REV__ENST00000536221.1_8:145484984-145485693:+|nuORF	REV__ENST00000536221.1_8:145484984-145485693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	783.4365234375	1	783.435929	782.428653	0.90672	0.00071036	-0.036306	-2.8443E-05	0.87041	0.00068191	783.4357410780981	21.463	0.72674	21.244	20.751	21.478	-0.21832					17	13	2	0	0	0	0.32162	1	7378	7378		28.487	0.85804	1	2475000	+		25374	16342	16218	16304	24377	24377					0.028735576631902404
QAGNQCEYQDC	11	Unmodified	_QAGNQCEYQDC_					0	0	0			REV__nc|ENSG00000184347|O75094-3|SLIT3	REV__nc|ENSG00000184347|O75094-3|SLIT3	MULTI-MSMS	HCT116MG_D190212_S3	3	629.72705078125	2	629.726794	1257.43904	0.42396	0.00026698	0.038528	2.4262E-05	0.46248	0.00029124	629.7267037233249	19.3	0.26037	19.36	19.229	19.49	0.05983					7	4	2	0	0	0	0.74191	1	6633	6633		4.1895	0.24511	1	5385300	+		25375	13792	16219	16305	24378	24378					-0.17938615526873036
QAGPSNPPGAP	11	Unmodified	_QAGPSNPPGAP_					0	0	0		WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2	WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	496.76141357421875	2	496.743431	991.472308	0.2465	0.00012245	0.20764	0.00010315	0.45414	0.00022559	496.743416284476	21.278	1.4134	21.297	20.594	22.008	0.018446					41	26	2	0	0	0	0.3256	1	7279	7279		23.79	0	1	10149000			25376	4757	16220	16306	24379	24379					-0.023768776303313643
QAIPQSYCEHM	11	Unmodified	_QAIPQSYCEHM_					0	0	0		ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	MSMS	HCT116MG_D190212_S2	2	653.7832641601562	2	653.781373	1305.54819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.344	1	29.039	28.539	29.539	-0.305								0	0	0	0.95196	1	10745	10745		5.2969	1.3525	1				25377	6693	16221	16307	24380	24380					-0.09235984836709576
QAKGLGVP	8	Unmodified	_QAKGLGVP_					0	0	0			REV__ENSG00000214929|ENST00000344803|SPATA31D1	REV__ENSG00000214929|ENST00000344803|SPATA31D1	MSMS	HCT116MG_D190212_S4	4	385.23175048828125	2	385.231971	768.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.842	1	36.457	35.957	36.957	-0.38486								0	0	0	0.8837	1	13498	13498		5.7604	0	1		+		25378	14273	16222	16308	24381	24381					0.055901480428588
QAKVVLGPLLN	11	Unmodified	_QAKVVLGPLLN_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MSMS	HCT116MG_D190212_S2	2	576.359619140625	2	576.360973	1150.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.478	1	52.291	51.791	52.791	-0.18725								0	0	0	0.95686	1	20160	20160		2.7352	0.89096	1		+		25379	12556	16223	16309	24382	24382					0.13806839845233299
QALILKRSR	9	Unmodified	_QALILKRSR_					0	0	0			REV__nc|ENSG00000198554|O75717-2|WDHD1	REV__nc|ENSG00000198554|O75717-2|WDHD1	MSMS	HCT116MG_D190212_S4	4	362.23651123046875	3	362.236497	1083.68766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.857	1	61.602	61.102	62.102	-0.25457								0	0	0	0.77018	1	23347	23347		0.26902	0	1		+		25380	14131	16224	16310	24383	24383					0.149165086251287
QALLRKGEKFG	11	Unmodified	_QALLRKGEKFG_					0	0	0		nc|ENSG00000197620|Q8TE69-2|EOLA1;ENSG00000197620|ENST00000393985|EOLA1;ENSG00000197021|ENST00000370406|EOLA2	nc|ENSG00000197620|Q8TE69-2|EOLA1	nc|ENSG00000197620|Q8TE69-2|EOLA1	MSMS	HCT116MG_D190212_S3	3	416.2490234375	3	416.247062	1245.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.362	1	39.061	38.561	39.561	-0.30137								0	0	0	0.95705	1	14610	14610		2.6312	1.8547	1				25381	6112	16225	16311	24384	24384					0.10632456588405148
QALNLIKD	8	Unmodified	_QALNLIKD_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	HCT116MG_D190212_S1	1	457.7693786621094	2	457.768917	913.523281	0.29086	0.00013315	1.2462	0.00057047	1.5371	0.00070362	457.7693712584478	17.662	0.3125	17.662	17.516	17.828	0					9	5	2	0	0	0	0.7524	1	6050	6050		16.942	0	1	2773900			25382	1961	16226	16312	24385	24385					0.06306071414519465
QALNLIKD	8	Unmodified	_QALNLIKD_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	457.768917	913.523281	0.29086	0.00013315	1.2462	0.00057047	1.5371	0.00070362	457.7693712584478	17.662	0.3125	17.662	17.516	17.828	0	0	0	NaN	16.942	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2773900			25383	1961	16226	16312							0.06306071414519465
QALPLCTCL	9	Unmodified	_QALPLCTCL_					0	0	0		ENST00000334220.8_1_14:75369167-75369260:+|nuORF	ENST00000334220.8_1_14:75369167-75369260:+|nuORF	ENST00000334220.8_1_14:75369167-75369260:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	481.2463073730469	2	481.245906	960.477259	0.12164	5.8537E-05	-0.087043	-4.1889E-05	0.034593	1.6648E-05	481.24579935497997	18.244	0.7289	18.32	17.841	18.57	0.076334					24	13	2	0	0	0	0.59184	1	6059	6059		11.64	2.2929	1	3448300			25384	7180	16227	16313	24386	24386					-0.004560330835829518
QAPGEGEGL	9	Unmodified	_QAPGEGEGL_					0	0	0		ENSG00000085644|ENST00000396878|ZNF213;ENST00000574928.5_1_16:3185143-3187740:+|nuORF	ENSG00000085644|ENST00000396878|ZNF213	ENSG00000085644|ENST00000396878|ZNF213	MULTI-MSMS	HCT116MG_D190212_S3	3	857.4016723632812	1	857.399938	856.392661	0.64136	0.0005499	0.09139	7.8357E-05	0.73275	0.00062826	857.4002448119616	23.941	0.57328	23.879	23.53	24.103	-0.061449					16	10	2	0	0	0	0.031089	1	8449	8449		85.272	14.138	1	4165100			25385	1456	16228	16314	24387	24387					-0.04127944304320863
QAPPPPPP	8	Unmodified	_QAPPPPPP_					0	0	0		ENSG00000114315|ENST00000232424|HES1;RBM33|p.L1031Pfs*109|1|0.35|ENSG00000184863|chr7:155763914-155763915|-/G|frameshift_variant;RBM33|p.G1030Afs*52|1|0.29|ENSG00000184863|chr7:155763915-155763915|G/-|frameshift_variant;RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant;RBM33|p.T776Qfs*17|1|0.24|ENSG00000184863|chr7:155742091-155742091|A/-|frameshift_variant;nc|ENSG00000115935|O43516-3|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-2|WIPF1;RBM33|p.P374Rfs*4|1|0.3|ENSG00000184863|chr7:155711372-155711372|C/-|frameshift_variant;ENST00000307403.6_1_7:155500050-155531112:+|nuORF;ENSG00000184863|ENST00000401878|RBM33;WASL|p.V422Wfs*17|2|0.27|ENSG00000106299|chr7:123692431-123692431|T/-|frameshift_variant;ENSG00000106299|ENST00000223023|WASL	ENSG00000114315|ENST00000232424|HES1;WASL|p.V422Wfs*17|2|0.27|ENSG00000106299|chr7:123692431-123692431|T/-|frameshift_variant;REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	HCT116MG_D190212_S3	3	400.7185363769531	2	400.718696	799.422839	0.20736	8.3093E-05	-0.15046	-6.0293E-05	0.056896	2.2799E-05	400.7184946187955	35.754	0.20584	35.455	35.369	35.575	-0.29922					8	5	2	0	0	0	0.86564	1	13194	13194		2.5775	0	1	13902000			25386	2414;2068;13694	16229	16315	24388	24388					0.015104591515068932
QAPRPATHPT	10	Unmodified	_QAPRPATHPT_					0	0	0			REV__ENST00000263119.9_1_22:24574256-24574385:+|nuORF	REV__ENST00000263119.9_1_22:24574256-24574385:+|nuORF	MSMS	HCT116MG_D190212_S2	2	538.2863159179688	2	538.285797	1074.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.195	1	20.812	20.312	21.312	-0.38288								0	0	0	0.30165	1	7446	7446		60.074	2.8248	1		+		25387	14647	16230	16316	24389	24389					0.02274492906258274
QAPTAPGAPGE	11	Unmodified	_QAPTAPGAPGE_					0	0	0		nc|ENSG00000007541|Q9BRB3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3-3|PIGQ	nc|ENSG00000007541|Q9BRB3|PIGQ	nc|ENSG00000007541|Q9BRB3|PIGQ	MULTI-MSMS	HCT116MG_D190212_S4	4	498.7539367675781	2	498.243264	994.471974	0.49057	0.00024443	0.38248	0.00019057	0.87305	0.00043499	498.2435385399356	26.059	0.78066	25.769	25.204	25.984	-0.29023					21	14	2	0	0	0	0.41923	1	9232	9232		53.317	7.2958	1	4270600			25388	850	16231	16317	24390	24390					-0.025482973501880224
QAQDPQAPVPQ	11	Unmodified	_QAQDPQAPVPQ_					0	0	0			REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	590.282958984375	2	589.793652	1177.57275	0.24004	0.00014157	0.9482	0.00055924	1.1882	0.00070082	589.7937646673242	18.454	0.67778	18.091	17.643	18.321	-0.36325					28	12	3	0	0	0	0.3218	1	6268	6268		24.991	0	1	33946000	+		25389	15341	16232	16318	24391	24391					-0.008932653673355162
QAQVDIEY	8	Unmodified	_QAQVDIEY_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-MSMS	HCT116MG_D190212_S1	1	965.4589233398438	1	965.457453	964.450176	0.68517	0.0006615	0.24445	0.000236	0.92962	0.0008975	965.4580768762814	26.806	0.26071	26.806	26.657	26.918	0					7	4	2	0	0	0	0.44484	1	9728	9728		46.021	4.1813	1	3506100	+		25390	13992	16233	16319	24392	24392					-0.03347102098769028
QARFFLVVS	9	Unmodified	_QARFFLVVS_					0	0	0			REV__ENSG00000180998|ENST00000321662|GPR137C	REV__ENSG00000180998|ENST00000321662|GPR137C	MSMS	HCT116MG_D190212_S4	4	356.20660400390625	3	356.206315	1065.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.491	1	59.213	58.713	59.713	-0.27731								0	0	0	0.76973	1	22388	22388		0.96228	0.56156	1		+		25391	13677	16234	16320	24393	24393					0.06694039576859723
QASGAGEL	8	Unmodified	_QASGAGEL_					0	0	0		TAF1L|p.G678A|1|0.23|ENSG00000122728|chr9:32633547-32633547|C/G|missense_variant	TAF1L|p.G678A|1|0.23|ENSG00000122728|chr9:32633547-32633547|C/G|missense_variant	TAF1L|p.G678A|1|0.23|ENSG00000122728|chr9:32633547-32633547|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	732.3526611328125	1	732.352259	731.344983	1.0455	0.00076565	-0.21266	-0.00015575	0.83281	0.00060991	732.3522107375991	22.679	0.20809	22.294	22.206	22.414	-0.3852					5	3	2	0	0	0	0.60054	1	8072	8072		32.305	0.18852	1	7578400			25392	18253	16235	16321	24394	24394					-0.031435985045050074
QATAAEKPWDA	11	Unmodified	_QATAAEKPWDA_					0	0	0		ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant;ENSG00000124203|ENST00000371030|ZNF831	ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant	ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	594.2891845703125	2	594.288202	1186.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.531	1	27.189	26.689	27.689	-0.34201								0	0	0	0.92235	1	10004	10004		17.113	4.0704	1				25393	2834	16236	16322	24395	24395					-0.023966677416183302
QATPDSHL	8	Unmodified	_QATPDSHL_					0	0	0			REV__ENST00000264235.12_2_3:119543286-119543451:-|nuORF	REV__ENST00000264235.12_2_3:119543286-119543451:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	868.4156494140625	1	868.415922	867.408646	0.47939	0.00041631	0.27214	0.00023633	0.75153	0.00065264	868.415944575778	17.629	0.83127	17.458	17.121	17.952	-0.17047					28	15	3	0	0	0	0.09113	1	5808	5808		97.075	7.6739	1	17483000	+		25394	14662	16237	16323	24396	24396					-0.030362380674318956
QATVIDLHTV	10	Unmodified	_QATVIDLHTV_					0	0	0			REV__ENSG00000130584|ENST00000245663|ZBTB46	REV__ENSG00000130584|ENST00000245663|ZBTB46	MSMS	HCT116MG_D190212_S2	2	548.8012084960938	2	548.803488	1095.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.826	1	21.441	20.941	21.941	-0.38503								0	0	0	0.8981	1	7702	7702		16.149	0	1		+		25395	11931	16238	16324	24397	24397					0.04845110643418593
QAVHTGEKP	9	Unmodified	_QAVHTGEKP_					0	0	0		ENSG00000267041|ENST00000591344|ZNF850	ENSG00000267041|ENST00000591344|ZNF850	ENSG00000267041|ENST00000591344|ZNF850	MULTI-MSMS	HCT116MG_D190212_S1	1	483.75396728515625	2	483.753798	965.493044	0.238	0.00011513	-0.31643	-0.00015307	-0.078432	-3.7942E-05	483.7537287837576	25.744	0.26152	25.744	25.614	25.875	0					7	4	2	0	0	0	0.2853	1	9306	9306		32.305	8.2849	1	6525700			25396	6648	16239	16325	24398	24398					0.008917127493418775
QAVMNGRNVQW	11	Unmodified	_QAVMNGRNVQW_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MSMS	HCT116MG_D190212_S1	1	434.8705749511719	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9866	1	6.9866	6.4866	7.4866	0								0	0	0	0.9619	1	2111	2111		0.094841	0	1		+		25397	12696	16240	16326	24399	24399					-0.008861213626232711
QAVMNGRNVQW	11	Unmodified	_QAVMNGRNVQW_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MSMS	HCT116MG_D190212_S1	1	434.88201904296875	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.375	1	64.375	63.875	64.875	0								0	0	0	0.9619	1	24834	24834		0.094841	0	1		+		25398	12696	16240	16326	24400	24400					-0.008861213626232711
QAVMNGRNVQW	11	Unmodified	_QAVMNGRNVQW_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MSMS	HCT116MG_D190212_S2	2	434.8819885253906	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9664	1	4.8476	4.3476	5.3476	-0.11871								0	0	0	0.9619	1	1570	1570		0.094841	0	1		+		25399	12696	16240	16326	24401	24401					-0.008861213626232711
QAVMNGRNVQW	11	Unmodified	_QAVMNGRNVQW_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MSMS	HCT116MG_D190212_S3	3	434.8822021484375	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.66522	1	0.72612	0.22612	1.2261	0.060905								0	0	0	0.9619	1	216	216		0.094841	0	1		+		25400	12696	16240	16326	24402	24402					-0.008861213626232711
QAVMNGRNVQW	11	Unmodified	_QAVMNGRNVQW_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MSMS	HCT116MG_D190212_S4	4	434.8824462890625	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.34186	1	0.077297	-0.4227	0.5773	-0.26456								0	0	0	0.9619	1	118	118		0.094841	0	1		+		25401	12696	16240	16326	24403	24403					-0.008861213626232711
QAVMNGRNVQW	11	Unmodified	_QAVMNGRNVQW_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MSMS	HCT116MG_D190212_S4	4	434.88250732421875	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6251	1	1.3606	0.86055	1.8606	-0.26456								0	0	0	0.9619	1	494	494		0.094841	0	1		+		25402	12696	16240	16326	24404	24404					-0.008861213626232711
QAVMNGRNVQW	11	Unmodified	_QAVMNGRNVQW_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MSMS	HCT116MG_D190212_S4	4	434.8825378417969	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9538	1	5.6923	5.1923	6.1923	-0.26151								0	0	0	0.9619	1	1819	1819		0.094841	0	1		+		25403	12696	16240	16326	24405	24405					-0.008861213626232711
QAVMNGRNVQW	11	Unmodified	_QAVMNGRNVQW_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MSMS	HCT116MG_D190212_S4	4	434.8822326660156	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9055	1	6.6553	6.1553	7.1553	-0.25015								0	0	0	0.9619	1	2116	2116		0.094841	0	1		+		25404	12696	16240	16326	24406	24406					-0.008861213626232711
QAWCCCFCCF	10	Unmodified	_QAWCCCFCCF_					0	0	0		ENST00000373874.6_1_20:35220052-35220253:+|nuORF	ENST00000373874.6_1_20:35220052-35220253:+|nuORF	ENST00000373874.6_1_20:35220052-35220253:+|nuORF	MSMS	HCT116MG_D190212_S2	2	607.3452758789062	2	607.191436	1212.36832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.594	1	32.376	31.876	32.876	-0.21876								0	0	0	0.96377	1	12065	12065		1.6526	0.17072	1				25405	7482	16241	16327	24407	24407					-0.22937026641398006
QCDQHSELYFE	11	Unmodified	_QCDQHSELYFE_					0	0	0			REV__CUBN|p.D2619E|1|0.33|ENSG00000107611|chr10:16906258-16906258|A/C|missense_variant	REV__CUBN|p.D2619E|1|0.33|ENSG00000107611|chr10:16906258-16906258|A/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	699.7821044921875	2	699.785167	1397.55578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.906	1	16.906	16.406	17.406	0								0	0	0	0.95636	1	5721	5721		2.9952	1.6657	1		+		25406	10307	16242	16328	24408	24408					-0.1270955403545031
QCHLFYFRW	9	Unmodified	_QCHLFYFRW_					0	0	0			REV__ENST00000566157.5_1_16:56509419-56509467:+|nuORF	REV__ENST00000566157.5_1_16:56509419-56509467:+|nuORF	MSMS	HCT116MG_D190212_S1	1	650.6336669921875	2	650.308218	1298.60188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.268	1	63.268	62.768	63.768	0								0	0	0	0.7701	1	24442	24442		0.52476	0.066424	1		+		25407	16540	16243	16329	24409	24409					-0.03547399552053321
QCRLKLLKY	9	Unmodified	_QCRLKLLKY_					0	0	0			REV__ENST00000442992.6_1_12:4668556-4668634:+|nuORF	REV__ENST00000442992.6_1_12:4668556-4668634:+|nuORF	MSMS	HCT116MG_D190212_S1	1	388.9014587402344	3	388.902238	1163.68488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.747	1	10.747	10.247	11.247	0								0	0	0	0.77018	1	3321	3321		0.26902	0.1097	1		+		25408	15657	16244	16330	24410	24410					0.1095891717595805
QCSRADETSP	10	Unmodified	_QCSRADETSP_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	MSMS	HCT116MG_D190212_S2	2	365.1571044921875	3	365.157472	1092.45059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.467	1	27.125	26.625	27.625	-0.34201								0	0	0	0.95631	1	9978	9978		3.3196	0.58445	1		+		25409	13904	16245	16331	24411	24411					-0.0919405044121504
QDALHIPRLL	10	Unmodified	_QDALHIPRLL_					0	0	0		ENSG00000165959|ENST00000298912|CLMN;ENST00000556454.1_1_14:95660863-95677170:-|nuORF;CLMN|p.H819Mfs*29|1|0.43|ENSG00000165959|chr14:95202894-95202894|G/-|frameshift_variant;CLMN|p.K865Rfs*10|2|0.35|ENSG00000165959|chr14:95196612-95196612|T/-|frameshift_variant	ENSG00000165959|ENST00000298912|CLMN	ENSG00000165959|ENST00000298912|CLMN	MSMS	HCT116MG_D190212_S2	2	588.3460693359375	2	588.348397	1174.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.493	1	18.13	17.63	18.63	-0.36325								0	0	0	0.84701	1	6359	6359		22.736	4.5899	1				25410	4813	16246	16332	24412	24412					0.10188785042646487
QDAPDCLSGP	10	Unmodified	_QDAPDCLSGP_					0	0	0			REV__ENST00000563663.5_1_15:75137426-75165648:-|nuORF	REV__ENST00000563663.5_1_15:75137426-75165648:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	501.2667236328125	2	501.713482	1001.41241	0.3029	0.00015197	0.0073027	3.6638E-06	0.3102	0.00015563	501.7134743933417	21.174	0.20811	21.193	21.063	21.271	0.018446					5	3	2	0	0	0	0.29999	1	7376	7376		18.146	7.3224	1	5153100	+		25411	16514	16247	16333	24413	24413					-0.08823936355884143
QDAPEPPAFTQ	11	Unmodified	_QDAPEPPAFTQ_					0	0	0		CDH24|p.L437Pfs*35|1|0.36|ENSG00000139880|chr14:23052526-23052527|-/G|frameshift_variant;ENSG00000139880|ENST00000487137|CDH24;nc|ENSG00000139880|Q86UP0|CDH24	CDH24|p.L437Pfs*35|1|0.36|ENSG00000139880|chr14:23052526-23052527|-/G|frameshift_variant	CDH24|p.L437Pfs*35|1|0.36|ENSG00000139880|chr14:23052526-23052527|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	601.2825317382812	2	600.78021	1199.54587	1.2776	0.00076755	-0.13659	-8.2059E-05	1.141	0.00068549	600.7798307491727	41.734	0.64479	41.358	41.297	41.942	-0.37637					28	16	2	0	0	0	0.72218	1	15319	15319		13.615	1.3742	1	7076300			25412	386	16248	16334	24414	24414					-0.04592373978516662
QDATQDHAV	9	Unmodified	_QDATQDHAV_					0	0	0		ENSG00000143375|ENST00000271636|CGN;nc|ENSG00000143375|Q9P2M7-2|CGN	ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	HCT116MG_D190212_S2	2	492.722900390625	2	492.722695	983.430838	0.22129	0.00010904	0.43286	0.00021328	0.65415	0.00032231	492.7228854202382	16.154	0.36584	15.82	15.637	16.003	-0.33451					12	6	3	0	0	0	0.47809	1	5439	5439		18.146	2.2992	1	13965000			25413	3806	16249	16335	24415	24415					-0.06154058389677175
QDAYFITFML	10	Unmodified	_QDAYFITFML_					0	0	0		ENSG00000174669|ENST00000357440|SLC29A2	ENSG00000174669|ENST00000357440|SLC29A2	ENSG00000174669|ENST00000357440|SLC29A2	MULTI-MSMS	HCT116MG_D190212_S4	4	624.8020629882812	2	624.8021	1247.58965	0.4924	0.00030765	-0.13877	-8.6704E-05	0.35363	0.00022095	624.8020365044094	25.052	0.62409	24.772	24.642	25.266	-0.27958					12	11	2	0	0	0	0.84626	1	8891	8891		8.1555	1.4324	1	3125800			25414	5340	16250	16336	24416	24416					-0.024244808057346745
QDDCCGCCG	9	Unmodified	_QDDCCGCCG_					0	0	0		ENSG00000169908|ENST00000305366|TM4SF1	ENSG00000169908|ENST00000305366|TM4SF1	ENSG00000169908|ENST00000305366|TM4SF1	MSMS	HCT116MG_D190212_S2	2	452.1106262207031	2	452.108623	902.202694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0023	1	0.99606	0.49606	1.4961	-0.00626								0	0	0	0.77025	1	323	323		0	0	1				25415	5100	16251	16337	24417	24417					-0.2523196189653163
QDEVLNIQ	8	Unmodified	_QDEVLNIQ_					0	0	0		ENST00000404626.4_1_7:3186878-3197839:-|nuORF	ENST00000404626.4_1_7:3186878-3197839:-|nuORF	ENST00000404626.4_1_7:3186878-3197839:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	480.21044921875	2	479.745639	957.476725	0.36442	0.00017483	-0.15346	-7.3622E-05	0.21096	0.00010121	479.7456173060081	20.467	0.26009	20.266	20.144	20.404	-0.20133					6	4	2	0	0	0	0.31449	1	6974	6974		3.5965	0	1	2475400			25416	7706	16252	16338	24418	24418					-0.00371413207437854
QDEWMDNSDDQ	11	Unmodified	_QDEWMDNSDDQ_					0	0	0			REV__ENSG00000198700|ENST00000361565|IPO9	REV__ENSG00000198700|ENST00000361565|IPO9	MSMS	HCT116MG_D190212_S2	2	691.6281127929688	2	691.743696	1381.47284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.92	1	28.604	28.104	29.104	-0.31613								0	0	0	0.96003	1	10571	10571		1.0715	0	1		+		25417	14141	16253	16339	24419	24419					-0.20263915554119194
QDFLREIY	8	Unmodified	_QDFLREIY_					0	0	0			REV__nc|ENSG00000163618|Q9ULU8-2|CADPS	REV__nc|ENSG00000163618|Q9ULU8-2|CADPS	MULTI-MSMS	HCT116MG_D190212_S2	2	543.0035400390625	2	542.277106	1082.53966	0.48559	0.00026332	-0.060884	-3.3016E-05	0.42471	0.00023031	542.2761531292144	51.463	0.30912	51.281	51.168	51.477	-0.18207					10	5	3	0	0	0	0.67912	1	19737	19737		25.399	6.1423	1	7542000	+		25418	12935	16254	16340	24420	24420					0.001691525806336358
QDGPTSAPPQQ	11	Unmodified	_QDGPTSAPPQQ_					0	0	0			REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	563.2615356445312	2	563.262185	1124.50982	0.39309	0.00022141	-0.17483	-9.8476E-05	0.21826	0.00012294	563.2618377385583	15.449	0.36468	15.535	15.404	15.769	0.085423					11	6	3	0	0	0	0.63066	1	5083	5083		32.037	2.9559	1	3134600	+		25419	13795	16255	16341	24421	24421					-0.047458311554009924
QDGPTSAPPQQ	11	Unmodified	_QDGPTSAPPQQ_					0	0	0			REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	563.26220703125	2	563.262185	1124.50982	-0.36072	-0.00020318	0.49789	0.00028044	0.13717	7.7262E-05	563.2624430586255	15.477	0.34115	15.316	15.172	15.513	-0.16173					11	6	2	0	0	0	0.64269	1	5002	5002		30.703	11.341	1	1530400	+		25420	13795	16255	16341	24422	24422					-0.047458311554009924
QDGPTSAPPQQ	11	Unmodified	_QDGPTSAPPQQ_					0	0	0			REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	563.262185	1124.50982	0.39309	0.00022141	-0.17483	-9.8476E-05	0.21826	0.00012294	563.2618377385583	15.449	0.36468	15.535	15.404	15.769	0.085423	0.10939	-0.00058089	NaN	32.037	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3134600	+		25421	13795	16255	16341							-0.047458311554009924
QDGPTSAPPQQ	11	Unmodified	_QDGPTSAPPQQ_					0	0	0			REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	REV__MAML2|p.Q608Hfs*73|2|0.08|ENSG00000184384|chr11:96092207-96092207|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	563.262185	1124.50982	-0.36072	-0.00020318	0.49789	0.00028044	0.13717	7.7262E-05	563.2624430586255	15.477	0.34115	15.316	15.172	15.513	-0.16173	-0.10939	0.00017694	NaN	32.037	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1530400	+		25422	13795	16255	16341							-0.047458311554009924
QDKARLYRA	9	Unmodified	_QDKARLYRA_					0	0	0			REV__ENSG00000237172|ENST00000449549|B3GNT9	REV__ENSG00000237172|ENST00000449549|B3GNT9	MULTI-SECPEP	HCT116MG_D190212_S1	1	560.3291015625	2	560.814722	1119.61489	0.30384	0.0001704	2.2245	0.0012475	2.5283	0.0014179	560.815931870495	44.588	0.15715	44.588	44.464	44.621	0					6	2	3	0	0	0	0.25004	1	16849	16849		15.847	5.7733	1	9681200	+		25423	14338	16256	16342	24423	24423					0.05986754831701546
QDKNQHKWLK	10	Unmodified	_QDKNQHKWLK_					0	0	0			REV__ENSG00000164761|ENST00000297350|TNFRSF11B	REV__ENSG00000164761|ENST00000297350|TNFRSF11B	MSMS	HCT116MG_D190212_S1	1	662.8666381835938	2	662.85966	1323.70477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.541	1	15.541	15.041	16.041	0								0	0	0	0.90752	1	5170	5170		16.149	0	1		+		25424	13022	16257	16343	24424	24424					0.05586384440266556
QDKTFKMYHV	10	Unmodified	_QDKTFKMYHV_					0	0	0			REV__ENST00000517607.1_1_8:10679572-10690446:-|nuORF	REV__ENST00000517607.1_1_8:10679572-10690446:-|nuORF	MSMS	HCT116MG_D190212_S1	1	432.88525390625	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0306	1	9.0306	8.5306	9.5306	0								0	0	0	0.97045	1	2733	2733		0.15932	0	1		+		25425	16215	16258	16344	24425	24425					-0.0027487130862482445
QDLEPKPL	8	Unmodified	_QDLEPKPL_					0	0	0		nc|ENSG00000082074|O15117|FYB1;ENSG00000082074|ENST00000512982|FYB1;nc|ENSG00000082074|O15117-3|FYB1	nc|ENSG00000082074|O15117|FYB1	nc|ENSG00000082074|O15117|FYB1	MSMS	HCT116MG_D190212_S3	3	470.25970458984375	2	470.260925	938.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.916	1	55.628	55.128	56.128	-0.28773								0	0	0	0.8837	1	21216	21216		12.532	1.7076	1				25426	1419	16259	16345	24426	24426					0.035583651776164515
QDLHERFH	8	Unmodified	_QDLHERFH_					0	0	0			REV__ENST00000268482.7_1_16:72137870-72137906:+|nuORF	REV__ENST00000268482.7_1_16:72137870-72137906:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	361.1946105957031	3	361.177307	1080.51009	-0.31323	-0.00011313	-0.16685	-6.0263E-05	-0.48008	-0.00017339	361.1771958732104	11.42	0.24861	11.139	10.995	11.244	-0.28186					14	10	2	0	0	0	0.33304	1	3666	3666		3.9444	2.2918	1	405530	+		25427	14686	16260	16346	24427	24427					-0.02694366644868751
QDLHKKII	8	Unmodified	_QDLHKKII_					0	0	0		APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;APAF1|p.E1208Gfs*14|1|0.23|ENSG00000120868|chr12:98732437-98732438|-/G|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	APAF1|p.F787Sfs*2|1|0.33|ENSG00000120868|chr12:98699461-98699461|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	497.8055419921875	2	497.805834	993.597115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.768	1	39.388	38.888	39.888	-0.37936								0	0	0	0.8837	1	14588	14588		9.3474	0	1				25428	154	16261	16347	24428	24428					0.10006039576853709
QDLIKKVLEN	10	Unmodified	_QDLIKKVLEN_					0	0	0		tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	tr|U7STL0|U7STL0_FUSNUSporephotoproductlyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01098PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	600.3524780273438	2	600.353345	1198.69214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.317	1	17.317	16.817	17.817	0								0	0	0	0.93202	1	5886	5886		8.7454	0	1				25429	18447	16262	16348	24429	24429					0.10073928257361331
QDLLELSPP	9	Unmodified	_QDLLELSPP_					0	0	0		ENST00000449426.1_1_7:56356827-56358135:+|nuORF;XPOT|p.F594Lfs*9|1|0.32|ENSG00000184575|chr12:64430089-64430089|T/-|frameshift_variant;XPOT|p.L602Hfs*4|1|0.04|ENSG00000184575|chr12:64430115-64430116|-/A|frameshift_variant;ENSG00000184575|ENST00000332707|XPOT	ENST00000449426.1_1_7:56356827-56358135:+|nuORF	ENST00000449426.1_1_7:56356827-56358135:+|nuORF	MSMS	HCT116MG_D190212_S2	2	506.2708435058594	2	506.27149	1010.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.345	1	19.965	19.465	20.465	-0.37949								0	0	0	0.76669	1	7106	7106		12.532	3.1841	1				25430	5777	16263	16349	24430	24430					0.02358330486470095
QDLNESEDY	9	Unmodified	_QDLNESEDY_					0	0	0			REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MSMS	HCT116MG_D190212_S3	3	556.7242431640625	2	556.722558	1111.43056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.428	1	44.121	43.621	44.621	-0.30759								0	0	0	0.76718	1	16608	16608		10.824	1.4408	1		+		25431	11465	16264	16350	24431	24431					-0.12069522900196716
QDLPAGSV	8	Unmodified	_QDLPAGSV_					0	0	0			REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	786.3997192382812	1	786.399209	785.391933	0.9161	0.00072042	-0.34349	-0.00027012	0.57261	0.0004503	786.3989147047755	27.817	0.30775	27.475	27.347	27.655	-0.34201					9	5	2	0	0	0	0.060005	1	10128	10128		112.59	19.771	1	34697000	+		25432	14651	16265	16351	24432	24432					-0.009347389533672867
QDLPAGSV	8	Unmodified	_QDLPAGSV_					0	0	0			REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	786.3997192382812	1	786.399209	785.391933	0.842	0.00066215	0.17248	0.00013564	1.0145	0.00079779	786.3991771452065	27.715	0.46781	27.526	27.361	27.829	-0.18847					14	8	2	0	0	0	0.10976	1	10009	10009		92.822	3.3953	1	23901000	+		25433	14651	16265	16351	24433	24433					-0.009347389533672867
QDLPAGSV	8	Unmodified	_QDLPAGSV_					0	0	0			REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	786.3993530273438	1	786.399209	785.391933	0.8977	0.00070595	-0.38449	-0.00030237	0.5132	0.00040358	786.3987487142475	27.901	0.46277	27.58	27.351	27.814	-0.32157					12	8	2	0	0	0	0.076688	1	10019	10019		100.37	10.945	1	15465000	+		25434	14651	16265	16351	24434	24434					-0.009347389533672867
QDLPAGSV	8	Unmodified	_QDLPAGSV_					0	0	0			REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	786.399209	785.391933	0.9161	0.00072042	-0.34349	-0.00027012	0.57261	0.0004503	786.3989147047755	27.817	0.30775	27.475	27.347	27.655	-0.34201	-0.05236	-0.00012302	NaN	112.59	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34697000	+		25435	14651	16265	16351							-0.009347389533672867
QDLPAGSV	8	Unmodified	_QDLPAGSV_					0	0	0			REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	786.399209	785.391933	0.842	0.00066215	0.17248	0.00013564	1.0145	0.00079779	786.3991771452065	27.715	0.46781	27.526	27.361	27.829	-0.18847	-0.00053738	0.00028274	NaN	112.59	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23901000	+		25436	14651	16265	16351							-0.009347389533672867
QDLPAGSV	8	Unmodified	_QDLPAGSV_					0	0	0			REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	REV__ENST00000263367.7_2_19:41798324-41800249:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	786.399209	785.391933	0.8977	0.00070595	-0.38449	-0.00030237	0.5132	0.00040358	786.3987487142475	27.901	0.46277	27.58	27.351	27.814	-0.32157	0.052898	-0.00015527	NaN	112.59	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15465000	+		25437	14651	16265	16351							-0.009347389533672867
QDLRALLKRKH	11	Unmodified	_QDLRALLKRKH_					0	0	0		nc|ENSG00000241839|Q8TD55-2|PLEKHO2;ENSG00000241839|ENST00000323544|PLEKHO2;ENST00000502574.1_1_15:65134152-65214443:+|nuORF	nc|ENSG00000241839|Q8TD55-2|PLEKHO2;ENST00000502574.1_1_15:65134152-65214443:+|nuORF	nc|ENSG00000241839|Q8TD55-2|PLEKHO2	MSMS	HCT116MG_D190212_S1	1	689.4237060546875	2	689.425502	1376.83645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.201	1	31.201	30.701	31.701	0								0	0	0	0.95273	1	11472	11472		4.897	1.3005	1				25438	6545;8427	16266	16352	24435	24435					0.16310614528015321
QDLRNGDPLTH	11	Unmodified	_QDLRNGDPLTH_					0	0	0		SEMA3A|p.I558L|1|0.28|ENSG00000075213|chr7:83977177-83977177|T/A|missense_variant	SEMA3A|p.I558L|1|0.28|ENSG00000075213|chr7:83977177-83977177|T/A|missense_variant	SEMA3A|p.I558L|1|0.28|ENSG00000075213|chr7:83977177-83977177|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	633.3160400390625	2	633.315283	1264.61601	0.57396	0.0003635	0.18595	0.00011777	0.75992	0.00048127	633.3153532947523	25.395	1.093	25.289	24.527	25.62	-0.10618					29	20	2	0	0	0	0.72419	1	9140	9140		12.873	0	1	2614800			25439	18140	16267	16353	24436	24436					-0.005710755900736331
QDLSFNKNLRL	11	Unmodified	_QDLSFNKNLRL_					0	0	0		ENST00000453604.6_1_19:11516043-11529954:-|nuORF	ENST00000453604.6_1_19:11516043-11529954:-|nuORF	ENST00000453604.6_1_19:11516043-11529954:-|nuORF	MSMS	HCT116MG_D190212_S2	2	674.5071411132812	2	674.372601	1346.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.865	1	37.772	37.272	38.272	-0.09301								0	0	0	0.85129	1	14208	14208		26.268	0	1				25440	8002	16268	16354	24437	24437					0.07115233891886419
QDLSKERFLQH	11	Unmodified	_QDLSKERFLQH_					0	0	0			REV__PHTF1|p.R495Q|1|0.08|ENSG00000116793|chr1:113706077-113706077|C/T|missense_variant	REV__PHTF1|p.R495Q|1|0.08|ENSG00000116793|chr1:113706077-113706077|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	700.8699340820312	2	700.867682	1399.72081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.372	1	38.279	37.779	38.779	-0.09301								0	0	0	0.94269	1	14414	14414		10.151	1.995	1		+		25441	17418	16269	16355	24438	24438					0.036940458865274195
QDNENVVNEY	10	Unmodified	_QDNENVVNEY_					0	0	0		CON__P02676	CON__P02676	CON__P02676	MULTI-MSMS	HCT116MG_D190212_S2	2	1223.5185546875	1	1223.51749	1222.51021	0.65703	0.00080389	-0.052109	-6.3756E-05	0.60492	0.00074013	1223.5172254369786	36.484	0.56931	36.356	36.071	36.64	-0.12799					21	10	3	0	0	0	0.57664	1	13648	13648		29.841	2.2118	1	27744000		+	25442	552	16270	16356	24439	24439					-0.09214456226186485
QDNENVVNEY	10	Unmodified	_QDNENVVNEY_					0	0	0		CON__P02676	CON__P02676	CON__P02676	MULTI-MSMS	HCT116MG_D190212_S3	3	1223.5184326171875	1	1223.51749	1222.51021	0.5296	0.00064797	0.17618	0.00021556	0.70578	0.00086353	1223.5176175587935	36.693	0.46835	36.392	36.093	36.561	-0.30113					15	8	2	0	0	0	0.57664	1	13549	13549		29.841	2.2118	1	5897200		+	25443	552	16270	16356	24440	24440					-0.09214456226186485
QDNENVVNEY	10	Unmodified	_QDNENVVNEY_					0	0	0		CON__P02676	CON__P02676	CON__P02676	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1223.51749	1222.51021	0.65703	0.00080389	-0.052109	-6.3756E-05	0.60492	0.00074013	1223.5172254369786	36.484	0.56931	36.356	36.071	36.64	-0.12799	-0.018062	-0.0001428	NaN	29.841	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27744000		+	25444	552	16270	16356							-0.09214456226186485
QDNENVVNEY	10	Unmodified	_QDNENVVNEY_					0	0	0		CON__P02676	CON__P02676	CON__P02676	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1223.51749	1222.51021	0.5296	0.00064797	0.17618	0.00021556	0.70578	0.00086353	1223.5176175587935	36.693	0.46835	36.392	36.093	36.561	-0.30113	0.018062	0.00013651	NaN	29.841	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5897200		+	25445	552	16270	16356							-0.09214456226186485
QDPKQQYWYLY	11	Unmodified	_QDPKQQYWYLY_					0	0	0			REV__nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41	REV__nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41	MSMS	HCT116MG_D190212_S2	2	766.3626708984375	2	766.364441	1530.71433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.14	1	28.824	28.324	29.324	-0.31613								0	0	0	0.95113	1	10661	10661		5.7319	0	1		+		25446	17278	16271	16357	24441	24441					-0.02979892064854539
QDPWPVWA	8	Unmodified	_QDPWPVWA_					0	0	0		ENST00000379644.8_2_8:43055194-43055551:+|nuORF	ENST00000379644.8_2_8:43055194-43055551:+|nuORF	ENST00000379644.8_2_8:43055194-43055551:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	499.7405700683594	2	499.74016	997.465767	0.42411	0.00021195	0.35525	0.00017753	0.77936	0.00038948	499.7403240794968	27.918	0.31164	27.597	27.45	27.762	-0.32157					11	5	3	0	0	0	0.76189	1	10052	10052		15.847	15.847	1	9924800			25447	7555	16272	16358	24442	24442					-0.03306770791061808
QDPWPVWA	8	Unmodified	_QDPWPVWA_					0	0	0		ENST00000379644.8_2_8:43055194-43055551:+|nuORF	ENST00000379644.8_2_8:43055194-43055551:+|nuORF	ENST00000379644.8_2_8:43055194-43055551:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	499.74016	997.465767	0.60878	0.00030423	0.2546	0.00012723	0.86338	0.00043146	499.7402239289157	27.679	0.31184	27.491	27.361	27.673	-0.18847	-0.052805	-3.4832E-05	NaN	15.847	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26565000			25448	7555	16272	16358							-0.03306770791061808
QDQQHGRK	8	Unmodified	_QDQQHGRK_					0	0	0		nc|ENSG00000124233|P04279-2|SEMG1;ENSG00000124233|ENST00000372781|SEMG1	nc|ENSG00000124233|P04279-2|SEMG1	nc|ENSG00000124233|P04279-2|SEMG1	MULTI-MSMS	HCT116MG_D190212_S1	1	498.75244140625	2	498.752121	995.48969	0.36195	0.00018052	0.59129	0.00029491	0.95324	0.00047543	498.75216194471716	27.412	0.20763	27.412	27.282	27.49	0					5	3	2	0	0	0	0.79062	1	9972	9972		12.532	0	1	12763000			25449	2838	16273	16359	24443	24443					-0.008235373046659333
QDQTMCMD	8	Unmodified	_QDQTMCMD_					0	0	0		FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant;FBN2|p.Y2717Lfs*24|1|0.17|ENSG00000138829|chr5:128263469-128263470|-/C|frameshift_variant;FBN2|p.I2832Sfs*65|1|0.4|ENSG00000138829|chr5:128259700-128259700|T/-|frameshift_variant;ENSG00000138829|ENST00000262464|FBN2	FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant	FBN2|p.D2138Tfs*111|3|0.3|ENSG00000138829|chr5:128290765-128290765|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	486.1675720214844	2	486.166995	970.319438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.366	1	40.064	39.564	40.564	-0.30161								0	0	0	0.8837	1	14983	14983		7.9102	1.187	1				25450	3595	16274	16360	24444	24444					-0.16690900405126285
QDRLRDRKRK	10	Unmodified	_QDRLRDRKRK_					0	0	0			REV__ENSG00000157014|ENST00000448281|TATDN2	REV__ENSG00000157014|ENST00000448281|TATDN2	MULTI-SECPEP	HCT116MG_D190212_S3	3	457.713623046875	3	457.607764	1369.80146	0.38082	0.00017427	0.70088	0.00032073	1.0817	0.00049499	457.6079416560196	53.706	1.2008	53.407	52.829	54.03	-0.29946					39	22	2	0	0	0	0.31182	1	20183	20183		0.62683	0.62683	1	2679000	+		25451	12739	16275	16361	24445	24445					0.1313537172004544
QDRRRRVKRR	10	Unmodified	_QDRRRRVKRR_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-4|TUT7	REV__nc|ENSG00000083223|Q5VYS8-4|TUT7	MSMS	HCT116MG_D190212_S3	3	713.4423217773438	2	713.440341	1424.86613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.492	1	44.184	43.684	44.684	-0.30759								0	0	0	0.95507	1	16634	16634		3.5965	2.1146	1		+		25452	10899	16276	16362	24446	24446					0.1706899131670525
QDRVVLKRVLL	11	Unmodified	_QDRVVLKRVLL_					0	0	0		nc|ENSG00000288591|Q9Y2I9|TBC1D30;nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;nc|ENSG00000288591|Q9Y2I9-4|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30	nc|ENSG00000288591|Q9Y2I9|TBC1D30	nc|ENSG00000288591|Q9Y2I9|TBC1D30	MSMS	HCT116MG_D190212_S3	3	669.9559936523438	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.977	1	50.663	50.163	51.163	-0.31381								0	0	0	0.95636	1	19237	19237		2.9952	1.3426	1				25453	9674	16277	16363	24447	24447					0.19529266956328684
QDRVVLKRVLL	11	Unmodified	_QDRVVLKRVLL_					0	0	0		nc|ENSG00000288591|Q9Y2I9|TBC1D30;nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;nc|ENSG00000288591|Q9Y2I9-4|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30	nc|ENSG00000288591|Q9Y2I9|TBC1D30	nc|ENSG00000288591|Q9Y2I9|TBC1D30	MSMS	HCT116MG_D190212_S3	3	669.935546875	2	669.932628	1337.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.046	1	50.733	50.233	51.233	-0.31348								0	0	0	0.95113	1	19264	19264		5.7319	4.0792	1				25454	9674	16277	16363	24448	24448					0.19529266956328684
QDSKTTLL	8	Unmodified	_QDSKTTLL_					0	0	0			REV__ENSG00000140396|ENST00000452400|NCOA2	REV__ENSG00000140396|ENST00000452400|NCOA2	MSMS	HCT116MG_D190212_S2	2	453.251220703125	2	453.250557	904.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.12	1	41.052	40.552	41.552	-0.068199								0	0	0	0.8837	1	15527	15527		9.3474	0	1		+		25455	12292	16278	16364	24449	24449					0.030497747979552514
QDSLKIWF	8	Unmodified	_QDSLKIWF_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	518.7772827148438	2	518.776742	1035.53893	0.3101	0.00016087	0.059696	3.0969E-05	0.3698	0.00019184	518.7767434561064	55.506	0.21631	55.214	55.083	55.3	-0.2918					5	3	2	0	0	0	0.30703	1	21069	21069		7.9102	0	1	4254600			25456	5	16279	16365	24450	24450					0.022583579315323732
QDSNSNAAPGK	11	Unmodified	_QDSNSNAAPGK_					0	0	0		ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant;ENSG00000171456|ENST00000375687|ASXL1	ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant	ASXL1|p.G1376Vfs*74|1|0.09|ENSG00000171456|chr20:32436834-32436834|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	544.7505493164062	2	544.751984	1087.48942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.685	1	40.384	39.884	40.884	-0.30161								0	0	0	0.93456	1	15112	15112		14.405	3.5815	1				25457	205	16280	16366	24451	24451					-0.050830018152055345
QDTAYIDKP	9	Unmodified	_QDTAYIDKP_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	HCT116MG_D190212_S2	2	525.7587890625	2	525.758746	1049.50294	0.28943	0.00015217	0.29447	0.00015482	0.58389	0.00030699	525.7588739327781	37.206	0.77185	37.103	36.613	37.385	-0.10318					25	14	3	0	0	0	0.39784	1	13826	13826		22.736	1.1993	1	655780000	+		25458	13504	16281	16367	24452	24452					-0.019831440359666885
QDTLFLRAK	9	Unmodified	_QDTLFLRAK_					0	0	0		nc|ENSG00000101400|Q13424-2|SNTA1;ENSG00000101400|ENST00000217381|SNTA1	nc|ENSG00000101400|Q13424-2|SNTA1	nc|ENSG00000101400|Q13424-2|SNTA1	MSMS	HCT116MG_D190212_S4	4	546.3117065429688	2	546.314023	1090.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.23	1	37.847	37.347	38.347	-0.38283								0	0	0	0.74436	1	14003	14003		16.942	6.1184	1				25459	1785	16282	16368	24453	24453					0.07181120742939129
QDTQEVIV	8	Unmodified	_QDTQEVIV_					0	0	0		ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.S1043Afs*2|1|0.11|ENSG00000113721|chr5:150117629-150117629|G/-|frameshift_variant;ENSG00000113721|ENST00000261799|PDGFRB	ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENST00000520579.5_1_5:149495328-149514444:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	932.5657958984375	1	931.473103	930.465826	0.82857	0.00077179	-0.42657	-0.00039734	0.402	0.00037445	931.4726515011007	57.697	0.31076	57.697	57.464	57.775	0					9	5	2	0	0	0	0.51336	1	22157	22157		39.957	7.6518	1	8576900			25460	2403	16283	16369	24454	24454					-0.0021881558171799043
QDVEGNDVIEE	11	Unmodified	_QDVEGNDVIEE_					0	0	0		RNF157|p.A587V|1|0.28|ENSG00000141576|chr17:76155256-76155256|G/A|missense_variant	RNF157|p.A587V|1|0.28|ENSG00000141576|chr17:76155256-76155256|G/A|missense_variant	RNF157|p.A587V|1|0.28|ENSG00000141576|chr17:76155256-76155256|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	624.2785034179688	2	623.775322	1245.53609	0.56402	0.00035182	0.19256	0.00012011	0.75658	0.00047194	623.7753561204173	18.74	0.20848	18.74	18.61	18.819	0					8	3	3	0	0	0	0.69168	1	6478	6478		24.882	0	1	2840000			25461	18115	16284	16370	24455	24455					-0.07685606774521148
QDVHRVLV	8	Unmodified	_QDVHRVLV_					0	0	0		ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ATM|p.F627Sfs*22|1|0.4|ENSG00000149311|chr11:108252889-108252889|T/-|frameshift_variant;ATM|p.S214Pfs*16|1|0.39|ENSG00000149311|chr11:108244090-108244090|T/-|frameshift_variant;ATM|p.G1642Wfs*23|1|0.78|ENSG00000149311|chr11:108297299-108297300|-/T|frameshift_variant;ATM|p.T1609*|1|0.23|ENSG00000149311|chr11:108294972-108294973|-/TG|frameshift_variant;ATM|p.I1581Sfs*20|1|0.25|ENSG00000149311|chr11:108293437-108293437|A/-|frameshift_variant;ATM|p.P1587Ffs*13|1|0.08|ENSG00000149311|chr11:108293459-108293462|ACCC/-|frameshift_variant;ATM|p.V1446Cfs*2|1|0.25|ENSG00000149311|chr11:108289697-108289698|-/T|frameshift_variant;ATM|p.K1170Nfs*11|1|0.26|ENSG00000149311|chr11:108281098-108281098|A/-|frameshift_variant;ATM|p.W1026Lfs*22|1|0.36|ENSG00000149311|chr11:108271401-108271402|-/T|frameshift_variant	ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	483.2802734375	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.836	1	42.461	41.961	42.961	-0.37493								0	0	0	0.8837	1	15759	15759		12.532	0	1				25462	220	16285	16371	24456	24456					0.06172295882947765
QDWSDYLMW	9	Unmodified	_QDWSDYLMW_					0	0	0			REV__ENSG00000184560|ENST00000333870|SPEM2	REV__ENSG00000184560|ENST00000333870|SPEM2	MULTI-SECPEP	HCT116MG_D190212_S2	2	622.2986450195312	2	622.258056	1242.50156	0.73	0.00045425	0.47061	0.00029284	1.2006	0.00074708	622.2582902279548	36.243	0.20673	36.115	35.967	36.174	-0.12799					5	3	2	0	0	0	0.25874	1	13562	13562		7.2892	7.2892	1	10228000	+		25463	13804	16286	16372	24457	24457					-0.1099910139637359
QDWVQENYLEY	11	Unmodified	_QDWVQENYLEY_					0	0	0		ENST00000456494.1_3_X:148730977-148731121:-|nuORF;ENSG00000267978|ENST00000595065|MAGEA9B;ENSG00000123584|ENST00000243314|MAGEA9;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000124260|ENST00000370323|MAGEA10	ENST00000456494.1_3_X:148730977-148731121:-|nuORF	ENST00000456494.1_3_X:148730977-148731121:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	744.3295288085938	2	743.827889	1485.64122	0.78898	0.00058686	-0.10542	-7.8413E-05	0.68356	0.00050845	743.8276500275485	38.078	0.25812	37.985	37.857	38.115	-0.09301					12	4	3	0	0	0	0.67406	1	14301	14301		27.223	4.487	1	68220000			25464	2811	16287	16373	24458	24458					-0.08217065578128313
QDWVQENYLEY	11	Unmodified	_QDWVQENYLEY_					0	0	0		ENST00000456494.1_3_X:148730977-148731121:-|nuORF;ENSG00000267978|ENST00000595065|MAGEA9B;ENSG00000123584|ENST00000243314|MAGEA9;ENSG00000147381|ENST00000276344|MAGEA4;ENSG00000124260|ENST00000370323|MAGEA10	ENST00000456494.1_3_X:148730977-148731121:-|nuORF	ENST00000456494.1_3_X:148730977-148731121:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	743.827889	1485.64122	0.67014	0.00049847	-0.21307	-0.00015849	0.45707	0.00033998	744.3288633744108	38.478	0.18599	38.096	37.956	38.142	-0.38163	0.066326	-0.00075011	NaN	27.223	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1588300			25465	2811	16287	16373							-0.08217065578128313
QDWYENEQCDM	11	Unmodified	_QDWYENEQCDM_					0	0	0			REV__ENSG00000131080|ENST00000374719|EDA2R	REV__ENSG00000131080|ENST00000374719|EDA2R	MSMS	HCT116MG_D190212_S4	4	487.5076599121094	3	487.507953	1459.50203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.746	1	13.584	13.084	14.084	-0.16233								0	0	0	0.9619	1	4323	4323		0.094841	0	1		+		25466	11954	16288	16374	24459	24459					-0.20934094529502545
QDYQRASAY	9	Unmodified	_QDYQRASAY_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-SECPEP	HCT116MG_D190212_S1	1	550.75048828125	2	551.25162	1100.48869	0.50548	0.00027865	-0.089097	-4.9115E-05	0.41638	0.00022953	551.251706465469	24.876	0.26194	24.876	24.778	25.04	0					7	4	2	0	0	0	0.24195	1	8941	8941		13.906	0	1	4957900			25467	9510	16289	16375	24460	24460					-0.05753796464250627
QDYRWWWRNFL	11	Unmodified	_QDYRWWWRNFL_					0	0	0		ENST00000479591.1_1_20:30749036-30753244:+|nuORF	ENST00000479591.1_1_20:30749036-30753244:+|nuORF	ENST00000479591.1_1_20:30749036-30753244:+|nuORF	MSMS	HCT116MG_D190212_S3	3	835.4060668945312	2	835.404766	1668.79498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.9	1	23.838	23.338	24.338	-0.061449								0	0	0	0.96208	1	8461	8461		0	0	1				25468	8228	16290	16376	24461	24461					-0.01266566231311117
QDYRWWWRNFL	11	Unmodified	_QDYRWWWRNFL_					0	0	0		ENST00000479591.1_1_20:30749036-30753244:+|nuORF	ENST00000479591.1_1_20:30749036-30753244:+|nuORF	ENST00000479591.1_1_20:30749036-30753244:+|nuORF	MSMS	HCT116MG_D190212_S4	4	835.4064331054688	2	835.404766	1668.79498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.768	1	17.593	17.093	18.093	-0.17501								0	0	0	0.96208	1	5918	5918		0	0	1				25469	8228	16290	16376	24462	24462					-0.01266566231311117
QEAAAFAG	8	Unmodified	_QEAAAFAG_					0	0	0		ENSG00000167302|ENST00000637944|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	MULTI-MSMS	HCT116MG_D190212_S2	2	764.3576049804688	1	764.357345	763.350068	0.63408	0.00048466	0.17748	0.00013566	0.81155	0.00062032	764.3573258102268	30.132	0.30954	29.848	29.667	29.976	-0.28453					10	5	3	0	0	0	0.21487	1	11069	11069		70.716	7.1527	1	49760000			25470	4913	16291	16377	24463	24463					-0.04107294641914905
QEAAAILMA	9	Unmodified	_QEAAAILMA_					0	0	0		nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	MULTI-MSMS	HCT116MG_D190212_S3	3	917.477294921875	1	917.476079	916.468803	0.72694	0.00066695	0.21306	0.00019548	0.94	0.00086243	917.4760817275934	48.155	0.31306	47.839	47.671	47.984	-0.31596					8	5	2	0	0	0	0.0048275	1	18118	18118		139.14	53.866	1	5772300			25471	1742	16292	16378	24464	24464					0.007227362714388619
QEAAAILMA	9	Unmodified	_QEAAAILMA_					0	0	0		nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	MULTI-MATCH	HCT116MG_D190212_S2	2		1	917.476079	916.468803	1.0155	0.00093168	0.36558	0.00033541	1.3811	0.0012671	917.4760733228289	47.897	0.15437	47.764	47.636	47.79	-0.13281	-0.037371	0.00012671	NaN	139.14	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16077000			25472	1742	16292	16378							0.007227362714388619
QEAAAVLMA	9	Unmodified	_QEAAAVLMA_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	HCT116MG_D190212_S1	1	903.4602661132812	1	903.460429	902.453153	0.66003	0.00059631	-0.20966	-0.00018942	0.45037	0.00040689	903.4596165821288	42.977	0.20818	42.977	42.847	43.056	0					5	3	2	0	0	0	0.0048275	1	16249	16249		139.14	46.316	1	10036000			25473	1774	16293	16379	24465	24465					-0.0019755024560481615
QEAAAVLMA	9	Unmodified	_QEAAAVLMA_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	HCT116MG_D190212_S2	2	903.4609985351562	1	903.460429	902.453153	0.52554	0.00047481	0.25168	0.00022738	0.77722	0.00070219	903.4605686055933	43.093	0.30872	43.019	42.891	43.2	-0.073376					8	5	2	0	0	0	0.0062667	1	16330	16330		126.57	44.953	1	31470000			25474	1774	16293	16379	24466	24466					-0.0019755024560481615
QEAAAVLMA	9	Unmodified	_QEAAAVLMA_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	HCT116MG_D190212_S3	3	903.4613037109375	1	903.460429	902.453153	0.82237	0.00074298	-0.16682	-0.00015071	0.65555	0.00059227	903.4601948398036	43.279	0.25866	42.974	42.878	43.137	-0.30472					10	6	2	0	0	0	0.0048275	1	16141	16141		139.14	46.316	1	13078000			25475	1774	16293	16379	24467	24467					-0.0019755024560481615
QEAELTGQLP	10	Unmodified	_QEAELTGQLP_					0	0	0		nc|ENSG00000147144|Q96HB5|CCDC120;nc|ENSG00000147144|Q96HB5-3|CCDC120;ENSG00000147144|ENST00000603986|CCDC120;CCDC120|p.A127Gfs*11|1|0.07|ENSG00000147144|chrX:49064422-49064423|-/G|frameshift_variant;nc|ENSG00000147144|Q96HB5-2|CCDC120;nc|ENSG00000147144|Q96HB5-5|CCDC120;CCDC120|p.E464Sfs*170|1|0.7|ENSG00000147144|chrX:49067604-49067604|G/-|frameshift_variant;ENST00000603906.1_1_X:48916566-48926191:+|nuORF	nc|ENSG00000147144|Q96HB5|CCDC120	nc|ENSG00000147144|Q96HB5|CCDC120	MULTI-MSMS	HCT116MG_D190212_S3	3	543.2775268554688	2	543.277303	1084.54005	0.51424	0.00027938	-0.0086151	-4.6804E-06	0.50563	0.0002747	543.2771934450175	42.249	0.57303	41.945	41.728	42.301	-0.30352					17	10	2	0	0	0	0.28966	2	15774	15774;15832		51.415	21.575	1	2686600			25476	3975	16294	16380	24468;24469	24468					0.001165275098173879
QEAEPAKELV	10	Unmodified	_QEAEPAKELV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S1	1	557.292236328125	2	557.292953	1112.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.163	1	32.163	31.663	32.663	0								0	0	0	0.3563	1	11859	11859		55.503	7.7541	1				25477	3119	16295	16381	24470	24470					0.019571005438820066
QEAEPAKELV	10	Unmodified	_QEAEPAKELV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	557.292724609375	2	557.292953	1112.57135	0.29521	0.00016452	0.083771	4.6685E-05	0.37898	0.0002112	557.2930184906679	32.282	0.31189	32.052	31.89	32.202	-0.23009					9	5	2	0	0	0	0.021392	1	11962	11962		117.84	66.208	1	10645000			25478	3119	16295	16381	24471	24471					0.019571005438820066
QEAEPLKQV	9	Unmodified	_QEAEPLKQV_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	HCT116MG_D190212_S2	2	521.2828979492188	2	521.282389	1040.55022	0.64666	0.00033709	1.1691	0.00060945	1.8158	0.00094654	521.2830975540736	29.612	0.46475	29.311	29.031	29.495	-0.30095					15	8	3	0	0	0	2.97E-11	1	10862	10862		249.55	163.91	1	33066000			25479	466	16296	16382	24472	24472					0.031571352350511006
QEAEPLKQV	9	Unmodified	_QEAEPLKQV_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	HCT116MG_D190212_S3	3	521.2830200195312	2	521.282389	1040.55022	0.44658	0.00023279	-0.054538	-2.843E-05	0.39204	0.00020436	521.2823068354489	29.607	0.52686	29.37	29.083	29.61	-0.23655					16	9	3	0	0	0	7.5242E-05	1	10770	10770		203.64	134.53	1	9859500			25480	466	16296	16382	24473	24473					0.031571352350511006
QEAEPLKQV	9	Unmodified	_QEAEPLKQV_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	521.282389	1040.55022	0.29572	0.00015416	-0.28021	-0.00014607	0.015512	8.0863E-06	521.2821154379592	29.824	0.31192	29.475	29.345	29.657	-0.34921	0.089629	-0.00028457	NaN	249.55	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1702300			25481	466	16296	16382							0.031571352350511006
QEAEPQKQV	9	Unmodified	_QEAEPQKQV_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.2955322265625	2	528.769645	1055.52474	0.070583	3.7322E-05	0.51236	0.00027092	0.58295	0.00030824	528.7697097841684	18.398	0.26132	18.035	17.904	18.165	-0.36325					7	4	2	0	0	0	0.10934	1	6356	6356		38.176	10.952	1	2587700			25482	466	16297	16383	24474	24474					-0.0008033928738768736
QEAFGFEQA	9	Unmodified	_QEAFGFEQA_					0	0	0		ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	ENSG00000117139|ENST00000367265|KDM5B	MULTI-MSMS	HCT116MG_D190212_S3	3	513.730224609375	2	513.729989	1025.44543	0.3116	0.00016008	0.3548	0.00018227	0.6664	0.00034235	513.729989195574	45.087	0.3127	44.778	44.628	44.941	-0.30927					9	5	2	0	0	0	0.0077497	1	16892	16892		118.89	53.66	1	6302100			25483	2558	16298	16384	24475	24475					-0.06627986241505823
QEAGIKTAF	9	Unmodified	_QEAGIKTAF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	HCT116MG_D190212_S2	2	482.75830078125	2	482.758549	963.502546	0.10214	4.9309E-05	-0.68828	-0.00033227	-0.58614	-0.00028296	482.75801706705494	35.506	0.29894	35.364	35.19	35.489	-0.14245					10	5	3	0	0	0	0.0096523	2	13278	13235;13278		114.2	17.917	1	38118000			25484	2988	16299	16385	24476;24477	24477					0.01933481034848228
QEAGIKTAF	9	Unmodified	_QEAGIKTAF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MATCH	HCT116MG_D190212_S1	1		2	482.758549	963.502546	0.31006	0.00014968	-0.52208	-0.00025204	-0.21202	-0.00010236	482.7582750024034	35.411	0.31123	35.411	35.215	35.526	0	0.023747	1.8074E-05	NaN	114.2	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7817900			25485	2988	16299	16385							0.01933481034848228
QEAGPHRVA	9	Unmodified	_QEAGPHRVA_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;KDM5C|p.L1399Wfs*5|2|0.16|ENSG00000126012|chrX:53193560-53193560|G/-|frameshift_variant;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;ENST00000477109.1_1_X:53226904-53227733:-|nuORF	nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	MULTI-MSMS	HCT116MG_D190212_S2	2	482.75177001953125	2	482.75159	963.488627	0.07249	3.4995E-05	0.46456	0.00022427	0.53705	0.00025926	482.75177448429923	15.789	0.31329	15.454	15.271	15.585	-0.33451					10	5	3	0	0	0	0.023938	1	5277	5277		92.491	31.134	1	5270500			25486	9447	16300	16386	24478	24478					0.005422483264283073
QEAILHNF	8	Unmodified	_QEAILHNF_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	486.2509765625	2	486.250892	970.48723	0.091702	4.459E-05	0.42164	0.00020502	0.51334	0.00024961	486.2510351343559	42.2	0.25943	42.2	42.071	42.33	0					6	4	2	0	0	0	0.11121	1	15942	15942		92.491	31.134	1	13277000			25487	438	16301	16387	24479	24479					0.0008061423766321241
QEAILHNF	8	Unmodified	_QEAILHNF_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	486.75372314453125	2	486.250892	970.48723	0.17144	8.3364E-05	0.83583	0.00040642	1.0073	0.00048978	486.2509120260921	42.154	0.36212	42.086	41.861	42.223	-0.068199					15	6	3	0	0	0	0.004099	2	15945	15945;15958		188.58	83.778	1	38729000			25488	438	16301	16387	24480;24481	24480					0.0008061423766321241
QEAILHNF	8	Unmodified	_QEAILHNF_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	486.2510986328125	2	486.250892	970.48723	0.23057	0.00011212	-0.39316	-0.00019117	-0.16258	-7.9057E-05	486.25045844390786	42.474	0.31345	42.17	41.987	42.301	-0.30352					9	5	2	0	0	0	0.11121	1	15834	15834		92.491	31.134	1	7227100			25489	438	16301	16387	24482	24482					0.0008061423766321241
QEAKRLRC	8	Unmodified	_QEAKRLRC_					0	0	0			REV__MTCL1|p.Y395C|1|0.06|ENSG00000168502|chr18:8718554-8718554|A/G|missense_variant	REV__MTCL1|p.Y395C|1|0.06|ENSG00000168502|chr18:8718554-8718554|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	502.27490234375	2	502.276918	1002.53928	0.41832	0.00021011	-0.72323	-0.00036326	-0.30492	-0.00015315	502.27643500691295	49.208	0.63163	48.892	48.657	49.289	-0.31596					22	11	3	0	0	0	0.74206	1	18455	18455		18.135	8.7875	1	4723700	+		25490	17040	16302	16388	24483	24483					0.038114543797632905
QEALSALTA	9	Unmodified	_QEALSALTA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	903.4783935546875	1	903.478188	902.470912	0.88575	0.00080026	-0.52959	-0.00047847	0.35616	0.00032179	903.4778908943437	41.955	0.31105	41.887	41.705	42.016	-0.068199					10	5	3	0	0	0	0.0034365	1	15872	15872		160.52	60.144	1	48758000			25491	2613	16303	16389	24484	24484					0.01577488280884154
QEALSALTA	9	Unmodified	_QEALSALTA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	452.242919921875	2	452.242732	902.470912	0.17816	8.0573E-05	-0.18926	-8.559E-05	-0.011094	-5.0173E-06	452.242618078657	41.943	0.25963	41.875	41.705	41.964	-0.068195					7	4	2	0	0	0	0.030723	1	15875	15875		85.642	37.296	1	19567000			25492	2613	16303	16389	24485	24485					0.01577488280884154
QEALSALTA	9	Unmodified	_QEALSALTA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S3	3	903.4790649414062	1	903.478188	902.470912	0.7739	0.0006992	-0.051488	-4.6518E-05	0.72241	0.00065268	903.4781275573246	42.161	0.36378	41.857	41.676	42.04	-0.30352					10	6	2	0	0	0	0.0034365	1	15691	15691		160.52	47.923	1	15875000			25493	2613	16303	16389	24486	24486					0.01577488280884154
QEALSALTA	9	Unmodified	_QEALSALTA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S3	3	452.24273681640625	2	452.242732	902.470912	0.17491	7.9103E-05	-0.31195	-0.00014108	-0.13703	-6.1973E-05	452.2426952702882	42.173	0.31165	41.87	41.676	41.987	-0.30352					9	5	2	0	0	0	0.020353	1	15707	15707		96.111	50.411	1	4324000			25494	2613	16303	16389	24487	24487					0.01577488280884154
QEALSALTA	9	Unmodified	_QEALSALTA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S4	4	903.4780883789062	1	903.478188	902.470912	0.70758	0.00063928	0.0098249	8.8766E-06	0.7174	0.00064816	903.478028200956	42.173	0.25888	41.798	41.684	41.942	-0.37564					7	4	2	0	0	0	0.023938	2	15547	15513;15547		92.491	38.659	1	2394100			25495	2613	16303	16389	24488;24489	24489					0.01577488280884154
QEALSALTA	9	Unmodified	_QEALSALTA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	452.242732	902.470912	0.20904	9.4537E-05	-0.27075	-0.00012244	-0.061708	-2.7907E-05	452.2425023964616	41.888	0.15665	41.888	41.81	41.966	0	0.010215	-3.2762E-05	NaN	96.111	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4851800			25496	2613	16303	16389							0.01577488280884154
QEAPIRVVIL	10	Unmodified	_QEAPIRVVIL_					0	0	0		ENST00000370651.5_1_6:64286453-64286510:+|nuORF	ENST00000370651.5_1_6:64286453-64286510:+|nuORF	ENST00000370651.5_1_6:64286453-64286510:+|nuORF	MSMS	HCT116MG_D190212_S1	1	569.3549194335938	2	569.353148	1136.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.391	1	57.391	56.891	57.891	0								0	0	0	0.94107	1	22083	22083		6.7232	1.4925	1				25497	7431	16304	16390	24490	24490					0.12886553328166883
QEAPPPPPP	9	Unmodified	_QEAPPPPPP_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	HCT116MG_D190212_S2	2	465.239990234375	2	465.239993	928.465432	0.30495	0.00014187	0.22618	0.00010523	0.53113	0.0002471	465.2400478209583	23.968	1.0909	23.585	22.884	23.975	-0.38324					28	20	2	0	0	0	0.016701	2	8480	8454;8480		99.799	0	1	6051600			25498	1086	16305	16391	24491;24492	24492					-0.0016619051091311121
QEAPPPPPP	9	Unmodified	_QEAPPPPPP_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ZFR|p.Q323Tfs*12|1|0.38|ENSG00000056097|chr5:32406839-32406840|-/T|frameshift_variant;ENST00000505366.1_1_5:32406854-32444764:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	HCT116MG_D190212_S3	3	465.240234375	2	465.239993	928.465432	0.28093	0.0001307	-0.69958	-0.00032547	-0.41866	-0.00019478	465.2394805769995	23.609	1.4585	23.569	22.979	24.437	-0.03968					43	27	2	0	0	0	0.0051486	2	8249	8249;8485		136.33	0	1	5152800			25499	1086	16305	16391	24493;24494	24493					-0.0016619051091311121
QEAQHLHV	8	Unmodified	_QEAQHLHV_					0	0	0		ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	MSMS	HCT116MG_D190212_S4	4	481.2472839355469	2	481.246141	960.477728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.965	1	22.727	22.227	23.227	-0.23758								0	0	0	0.8217	1	8017	8017		20.871	2.7362	1				25500	5501	16306	16392	24495	24495					-0.004091540478725619
QEAQKIFKA	9	Unmodified	_QEAQKIFKA_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MSMS	HCT116MG_D190212_S1	1	531.8007202148438	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.807	1	26.807	26.307	27.307	0								0	0	0	0.55657	1	9701	9701		34.402	16.255	1				25501	6109	16307	16393	24496	24496					0.05861431851622001
QEAQKIFKA	9	Unmodified	_QEAQKIFKA_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	531.8009643554688	2	531.800749	1061.58694	0.60374	0.00032107	0.09774	5.1978E-05	0.70148	0.00037305	531.8006379560936	27.197	0.31539	26.845	26.659	26.975	-0.35254					11	5	3	0	0	0	0.0035269	2	9872	9843;9872		187.3	124.72	1	44860000			25502	6109	16307	16393	24497;24498	24498					0.05861431851622001
QEAQKIFKA	9	Unmodified	_QEAQKIFKA_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	354.86962890625	3	354.869591	1061.58694	0.0036871	1.3085E-06	-0.22452	-7.9676E-05	-0.22084	-7.8368E-05	354.8695022529733	27.197	0.26351	26.845	26.659	26.923	-0.35254					7	4	2	0	0	0	0.20983	1	9878	9878		40.239	25.834	1	16419000			25503	6109	16307	16393	24499	24499					0.05861431851622001
QEAQKIFKA	9	Unmodified	_QEAQKIFKA_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	HCT116MG_D190212_S3	3	354.8695068359375	3	354.869591	1061.58694	-0.045792	-1.625E-05	-0.057042	-2.0243E-05	-0.10283	-3.6493E-05	354.86943507512774	26.934	0.31258	26.765	26.547	26.859	-0.16933					12	5	3	0	0	0	0.1535	1	9679	9679		47.594	28.232	1	7468700			25504	6109	16307	16393	24500	24500					0.05861431851622001
QEAQKIFKA	9	Unmodified	_QEAQKIFKA_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MSMS	HCT116MG_D190212_S3	3	531.8008422851562	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.955	1	26.786	26.286	27.286	-0.16933								0	0	0	5.8815E-08	1	9693	9693		173.69	119.85	1				25505	6109	16307	16393	24501	24501					0.05861431851622001
QEAQKIFKA	9	Unmodified	_QEAQKIFKA_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MSMS	HCT116MG_D190212_S4	4	531.8007202148438	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.246	1	26.934	26.434	27.434	-0.3114								0	0	0	0.76638	1	9744	9744		13.906	0	1				25506	6109	16307	16393	24502	24502					0.05861431851622001
QEAQKIFKA	9	Unmodified	_QEAQKIFKA_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	354.869591	1061.58694	0.022398	7.9484E-06	-0.2797	-9.9257E-05	-0.2573	-9.1309E-05	354.8694964679169	27.186	0.208	26.875	26.742	26.95	-0.3114	0.077758	-0.00032784	NaN	47.594	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1643600			25507	6109	16307	16393							0.05861431851622001
QEAQTELPQA	10	Unmodified	_QEAQTELPQA_					0	0	0		ENSG00000115386|ENST00000233735|REG1A	ENSG00000115386|ENST00000233735|REG1A	ENSG00000115386|ENST00000233735|REG1A	MSMS	HCT116MG_D190212_S4	4	557.771484375	2	557.772385	1113.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.026	1	46.655	46.155	47.155	-0.37038								0	0	0	0.93711	1	17381	17381		7.609	0.31972	1				25508	2465	16308	16394	24503	24503					-0.022006604955549847
QEASEAYLV	9	Unmodified	_QEASEAYLV_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S1	1	1009.4856567382812	1	1009.48367	1008.47639	0.64444	0.00065055	1.1182	0.0011288	1.7626	0.0017793	1009.485089409962	42.252	0.25975	42.252	42.123	42.383	0					6	4	2	0	0	0	0.030723	1	15945	15945		85.642	47.668	1	12651000			25509	3188	16309	16395	24504	24504					-0.027508329272791343
QEASEAYLV	9	Unmodified	_QEASEAYLV_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S2	2	1009.4843139648438	1	1009.48367	1008.47639	0.56868	0.00057408	0.2078	0.00020977	0.77649	0.00078385	1009.4836576417279	42.266	0.31095	42.197	42.016	42.327	-0.068199					12	5	3	0	0	0	0.0042464	1	15995	15995		147.06	84.486	1	83508000			25510	3188	16309	16395	24505	24505					-0.027508329272791343
QEASEAYLV	9	Unmodified	_QEASEAYLV_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S3	3	505.245849609375	2	505.245472	1008.47639	0.39433	0.00019923	-0.074753	-3.7769E-05	0.31958	0.00016146	505.2453563856589	42.507	0.31342	42.204	42.04	42.353	-0.30352					8	5	2	0	0	0	0.041798	1	15853	15853		78.728	34.87	1	4562600			25511	3188	16309	16395	24506	24506					-0.027508329272791343
QEASEAYLV	9	Unmodified	_QEASEAYLV_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S4	4	1009.4850463867188	1	1009.48367	1008.47639	0.60723	0.00061299	0.36706	0.00037054	0.97429	0.00098353	1009.4841358688965	42.585	0.30972	42.209	42.046	42.356	-0.37565					9	5	2	0	0	0	0.0062667	1	15657	15657		126.57	54.644	1	5668200			25512	3188	16309	16395	24507	24507					-0.027508329272791343
QEASENHVA	9	Unmodified	_QEASENHVA_					0	0	0		ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MULTI-SECPEP	HCT116MG_D190212_S1	1	492.2491760253906	2	492.722695	983.430838	0.33163	0.0001634	0.34837	0.00017165	0.68001	0.00033506	492.7227563350498	15.926	0.15618	15.926	15.848	16.004	0					4	2	2	0	0	0	0.11928	1	5328	5328		41.84	16.44	1	1476300			25513	1926	16310	16396	24508	24508					-0.06154058389665806
QEASENHVA	9	Unmodified	_QEASENHVA_					0	0	0		ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	492.722695	983.430838	0.22129	0.00010904	0.43286	0.00021328	0.65415	0.00032231	492.7228854202382	16.154	0.36584	15.82	15.637	16.003	-0.33451	-0.053177	3.6884E-05	NaN	41.84	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13965000			25514	1926	16310	16396							-0.06154058389665806
QEAVAPSTHPT	11	Unmodified	_QEAVAPSTHPT_					0	0	0		AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2805786132812	2	569.280377	1136.5462	0.38467	0.00021898	0.47296	0.00026925	0.85763	0.00048823	569.2804497707565	19.818	0.36361	19.443	19.246	19.61	-0.37503					18	6	5	0	0	0	0.52297	1	6896	6896		43.982	10.537	1	11205000			25515	80	16311	16397	24509	24509					-0.01660954258682068
QEAVAPSTHPT	11	Unmodified	_QEAVAPSTHPT_					0	0	0		AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	AGRN|p.L1006Wfs*34|1|0.18|ENSG00000188157|chr1:1046497-1046497|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	569.2808227539062	2	569.280377	1136.5462	0.5128	0.00029193	-0.16138	-9.1871E-05	0.35142	0.00020005	569.280334167192	19.394	0.46791	19.207	18.973	19.441	-0.18674					20	8	3	0	0	0	0.52297	1	6555	6555		43.982	2.0263	1	14026000			25516	80	16311	16397	24510	24510					-0.01660954258682068
QEAVRDVV	8	Unmodified	_QEAVRDVV_					0	0	0			REV__nc|ENSG00000103152|P29372-5|MPG	REV__nc|ENSG00000103152|P29372-5|MPG	MULTI-MSMS	HCT116MG_D190212_S2	2	458.2485046386719	2	458.248349	914.482145	0.40154	0.000184	0.37207	0.0001705	0.77361	0.00035451	458.24837822869824	34.48	0.30968	34.305	34.124	34.433	-0.17512					8	5	2	0	0	0	0.24264	1	12865	12865		65.235	9.058	1	18599000	+		25517	11178	16312	16398	24511	24511					0.02148310375048368
QEAVRDVV	8	Unmodified	_QEAVRDVV_					0	0	0			REV__nc|ENSG00000103152|P29372-5|MPG	REV__nc|ENSG00000103152|P29372-5|MPG	MULTI-MSMS	HCT116MG_D190212_S3	3	458.2484130859375	2	458.248349	914.482145	0.18722	8.5795E-05	0.35668	0.00016345	0.5439	0.00024924	458.2483956485686	34.628	0.25938	34.331	34.181	34.44	-0.29706					6	4	2	0	0	0	0.15965	1	12775	12775		81.613	33.864	1	4182600	+		25518	11178	16312	16398	24512	24512					0.02148310375048368
QEAVRDVV	8	Unmodified	_QEAVRDVV_					0	0	0			REV__nc|ENSG00000103152|P29372-5|MPG	REV__nc|ENSG00000103152|P29372-5|MPG	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	458.248349	914.482145	0.40154	0.000184	0.37207	0.0001705	0.77361	0.00035451	458.24837822869824	34.48	0.30968	34.305	34.124	34.433	-0.17512	-0.012749	8.4842E-06	NaN	81.613	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18599000	+		25519	11178	16312	16398							0.02148310375048368
QEAVRDVV	8	Unmodified	_QEAVRDVV_					0	0	0			REV__nc|ENSG00000103152|P29372-5|MPG	REV__nc|ENSG00000103152|P29372-5|MPG	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	458.248349	914.482145	0.18722	8.5795E-05	0.35668	0.00016345	0.5439	0.00024924	458.2483956485686	34.628	0.25938	34.331	34.181	34.44	-0.29706	0.012749	-5.6217E-06	NaN	81.613	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4182600	+		25520	11178	16312	16398							0.02148310375048368
QEAVTRLEA	9	Unmodified	_QEAVTRLEA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S1	1	508.7724609375	2	508.772188	1015.52982	0.60652	0.00030858	0.088439	4.4995E-05	0.69496	0.00035357	508.77229530879777	28.981	0.31337	28.981	28.851	29.164	0					7	5	2	0	0	0	0.012531	1	10580	10580		107.1	43.139	1	11103000			25521	5492	16313	16399	24513	24513					0.02267964575219139
QEAVTRLEA	9	Unmodified	_QEAVTRLEA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	508.77294921875	2	508.772188	1015.52982	0.5709	0.00029046	0.27641	0.00014063	0.84731	0.00043109	508.77238755374754	29.423	0.36001	29.122	28.929	29.289	-0.30095					13	6	3	0	0	0	0.011132	1	10779	10779		110.55	30.956	1	54423000			25522	5492	16313	16399	24514	24514					0.02267964575219139
QEAVTRLEA	9	Unmodified	_QEAVTRLEA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7729797363281	2	508.772188	1015.52982	0.34068	0.00017333	0.48941	0.000249	0.83009	0.00042233	508.77245458736724	29.401	0.31284	29.178	29.045	29.358	-0.22289					18	5	4	0	0	0	0.016412	1	10681	10681		100.09	36.13	1	37900000			25523	5492	16313	16399	24515	24515					0.02267964575219139
QEAVTRLEA	9	Unmodified	_QEAVTRLEA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S4	4	508.77276611328125	2	508.772188	1015.52982	0.15556	7.9143E-05	0.53295	0.00027115	0.6885	0.00035029	508.7725445676324	29.564	0.2601	29.215	29.085	29.345	-0.34921					7	4	2	0	0	0	0.014023	1	10693	10693		103.42	30.451	1	7770000			25524	5492	16313	16399	24516	24516					0.02267964575219139
QEAYFRYMA	9	Unmodified	_QEAYFRYMA_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42;ENST00000577978.1_1_17:61877821-61882415:+|nuORF;DDX42|p.I196Sfs*29|1|0.37|ENSG00000198231|chr17:63800576-63800576|A/-|frameshift_variant	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MSMS	HCT116MG_D190212_S2	2	589.768798828125	2	589.768591	1177.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.911	1	43.832	43.332	44.332	-0.078373								0	0	0	0.49326	1	16663	16663		29.082	2.8134	1				25525	6217	16314	16400	24517	24517					-0.05903091296841012
QEAYFRYMA	9	Unmodified	_QEAYFRYMA_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42;ENST00000577978.1_1_17:61877821-61882415:+|nuORF;DDX42|p.I196Sfs*29|1|0.37|ENSG00000198231|chr17:63800576-63800576|A/-|frameshift_variant	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MSMS	HCT116MG_D190212_S3	3	589.769287109375	2	589.768591	1177.52263	0.69325	0.00040886	-0.18833	-0.00011107	0.50492	0.00029779	589.768512749451	44.115	0.26007	43.807	43.655	43.916	-0.30759					6	4	2	0	0	0	0.027442	1	16501	16501		88.954	37.324	1	4457600			25526	6217	16314	16400	24518	24518					-0.05903091296841012
QEDDRQLIA	9	Unmodified	_QEDDRQLIA_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.F1672Lfs*25|1|0.08|ENSG00000137628|chr4:168220678-168220678|A/-|frameshift_variant;DDX60|p.T1194Pfs*8|1|0.22|ENSG00000137628|chr4:168252634-168252634|T/-|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	HCT116MG_D190212_S3	3	544.7738037109375	2	544.272552	1086.53055	0.38791	0.00021113	-0.51884	-0.00028239	-0.13093	-7.1263E-05	544.272443468385	30.588	0.23751	30.339	30.274	30.511	-0.24946					9	6	2	0	0	0	0.016744	2	11155	11155;11166		99.755	34.52	1	6303800			25527	660	16315	16401	24519;24520	24519					-0.009252407757003311
QEDDRYYTA	9	Unmodified	_QEDDRYYTA_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	HCT116MG_D190212_S2	2	580.7467651367188	2	580.746367	1159.47818	0.49703	0.00028865	-0.12697	-7.3739E-05	0.37006	0.00021491	580.7462969094123	25.339	0.26036	24.964	24.816	25.076	-0.37521					7	4	2	0	0	0	0.12421	1	9144	9144		53.404	22.767	1	10231000			25528	1500	16316	16402	24521	24521					-0.09517823909322942
QEDDRYYTA	9	Unmodified	_QEDDRYYTA_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	HCT116MG_D190212_S3	3	580.746826171875	2	580.746367	1159.47818	0.53357	0.00030987	-0.11076	-6.4323E-05	0.42281	0.00024554	580.7462549735758	25.128	0.31305	25.022	24.839	25.152	-0.10618					13	5	3	0	0	0	0.0046822	1	8962	8962		140.63	140.63	1	15746000			25529	1500	16316	16402	24522	24522					-0.09517823909322942
QEDDRYYTA	9	Unmodified	_QEDDRYYTA_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MSMS	HCT116MG_D190212_S4	4	580.7464599609375	2	580.746367	1159.47818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.385	1	25.106	24.606	25.606	-0.27958								0	0	0	0.029033	1	8993	8993		83.429	54.934	1				25530	1500	16316	16402	24523	24523					-0.09517823909322942
QEDGERVHF	9	Unmodified	_QEDGERVHF_					0	0	0			REV__ENST00000570895.1_1_17:53628595-53628751:-|nuORF	REV__ENST00000570895.1_1_17:53628595-53628751:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	558.9739990234375	2	558.757069	1115.49959	0.54435	0.00030416	-0.19737	-0.00011028	0.34698	0.00019388	558.7570404099579	47.226	0.20782	47.104	46.974	47.182	-0.12175					6	3	2	0	0	0	0.50572	1	17987	17987		22.736	11.096	1	11489000	+		25531	11287	16317	16403	24524	24524					-0.053543940899544396
QEDHYNNLSA	10	Unmodified	_QEDHYNNLSA_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S2	2	595.7576293945312	2	595.757266	1189.49998	0.7476	0.00044539	-0.60568	-0.00036084	0.14192	8.455E-05	595.7568482502866	25.217	0.2599	24.842	24.712	24.972	-0.37521					7	4	2	0	0	0	0.21913	1	9098	9098		57.722	37.307	1	24267000		+	25532	559	16318	16404	24525	24525					-0.08719019160753305
QEDHYNNLSA	10	Unmodified	_QEDHYNNLSA_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S3	3	595.7578125	2	595.757266	1189.49998	0.68856	0.00041021	-0.65605	-0.00039085	0.032504	1.9365E-05	595.7570532917808	24.971	0.20823	24.865	24.735	24.943	-0.10618					5	3	2	0	0	0	0.31047	1	8918	8918		49.554	29.14	1	7013700		+	25533	559	16318	16404	24526	24526					-0.08719019160753305
QEDPLPLAF	9	Unmodified	_QEDPLPLAF_					0	0	0		ENSG00000073536|ENST00000442241|NLE1;ENST00000593176.1_1_17:33464206-33469153:-|nuORF	ENSG00000073536|ENST00000442241|NLE1	ENSG00000073536|ENST00000442241|NLE1	MULTI-MSMS	HCT116MG_D190212_S2	2	515.26611328125	2	515.266207	1028.51786	0.29315	0.00015105	-0.29536	-0.00015219	-0.0022051	-1.1362E-06	515.2660024948614	57.376	0.1557	57.201	57.107	57.263	-0.17494					4	2	2	0	0	0	0.061422	1	22174	22174		69.105	40.023	1	9491700			25534	1286	16319	16405	24527	24527					0.004743478320506256
QEDPNAVLGR	10	Unmodified	_QEDPNAVLGR_					0	0	0		ENSG00000261236|ENST00000569669|BOP1;nc|ENSG00000261236|Q14137-2|BOP1	ENSG00000261236|ENST00000569669|BOP1	ENSG00000261236|ENST00000569669|BOP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	549.301025390625	2	549.780544	1097.54654	0.30098	0.00016547	-0.12149	-6.6795E-05	0.17949	9.8679E-05	549.7805995902261	15.841	0.2088	15.507	15.376	15.585	-0.33451					6	3	2	0	0	0	0.2916	1	5318	5318		4.897	0	1	1325100			25535	6629	16320	16406	24528	24528					0.0016646546118863625
QEDPTNTAA	9	Unmodified	_QEDPTNTAA_					0	0	0		EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7093200683594	2	473.709254	945.403954	0.23039	0.00010914	0.086089	4.0781E-05	0.31648	0.00014992	473.7092730678248	17.757	0.36562	17.401	17.232	17.597	-0.35647					11	6	3	0	0	0	0.0077497	1	6070	6070		118.89	50.814	1	12635000			25536	775	16321	16407	24529	24529					-0.07093167000857648
QEDPTNTAA	9	Unmodified	_QEDPTNTAA_					0	0	0		EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	946.411376953125	1	946.411231	945.403954	0.65296	0.00061797	-0.082738	-7.8304E-05	0.57023	0.00053967	946.4109850448199	17.771	0.26117	17.414	17.284	17.545	-0.35647					7	4	2	0	0	0	0.0062667	1	6082	6082		126.57	67.887	1	8750200			25537	775	16321	16407	24530	24530					-0.07093167000857648
QEDPTNTAA	9	Unmodified	_QEDPTNTAA_					0	0	0		EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	473.7091369628906	2	473.709254	945.403954	-0.081221	-3.8475E-05	0.15195	7.198E-05	0.070729	3.3505E-05	473.7092381089334	17.374	0.41615	17.456	17.273	17.69	0.081358					15	7	3	0	0	0	0.0057285	1	5834	5834		131.27	53.118	1	8523300			25538	775	16321	16407	24531	24531					-0.07093167000857648
QEDPTNTAA	9	Unmodified	_QEDPTNTAA_					0	0	0		EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	946.4114990234375	1	946.411231	945.403954	0.41852	0.00039609	0.21356	0.00020212	0.63208	0.00059821	946.4114513493482	17.374	0.36411	17.455	17.273	17.638	0.081358					15	6	4	0	0	0	0.0045841	1	5838	5838		142.08	53.126	1	5716700			25539	775	16321	16407	24532	24532					-0.07093167000857648
QEDPTNTAA	9	Unmodified	_QEDPTNTAA_					0	0	0		EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant;ENSG00000104412|ENST00000220853|EMC2	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	EMC2|p.T249Rfs*6|1|0.17|ENSG00000104412|chr8:108479044-108479044|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	473.7096252441406	2	473.709254	945.403954	0.033579	1.5907E-05	0.42113	0.00019949	0.45471	0.0002154	473.7093575783129	17.525	0.36354	17.355	17.121	17.484	-0.17047					11	6	2	0	0	0	0.016701	1	5811	5811		99.799	47.531	1	3669100			25540	775	16321	16407	24533	24533					-0.07093167000857648
QEDPTNVGP	9	Unmodified	_QEDPTNVGP_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MSMS	HCT116MG_D190212_S2	2	478.5242919921875	2	478.719621	955.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.526	1	25.157	24.657	25.657	-0.36914								0	0	0	0.35515	1	9196	9196		36.127	11.453	1				25541	2350	16322	16408	24534	24534					-0.05480576621187083
QEDPTNVGP	9	Unmodified	_QEDPTNVGP_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MSMS	HCT116MG_D190212_S3	3	478.7188720703125	2	478.719621	955.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.372	1	25.266	24.766	25.766	-0.10618								0	0	0	0.30227	1	9055	9055		39.957	10.876	1				25542	2350	16322	16408	24535	24535					-0.05480576621187083
QEDVGIHVV	9	Unmodified	_QEDVGIHVV_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-MSMS	HCT116MG_D190212_S2	2	498.2615966796875	2	498.261456	994.50836	0.15266	7.6065E-05	-0.67593	-0.00033679	-0.52327	-0.00026073	498.2614611809343	37.872	0.25736	37.779	37.651	37.908	-0.09301					9	4	3	0	0	0	0.023611	1	14239	14239		92.822	54.848	1	16728000			25543	4114	16323	16409	24536	24536					0.01088579546535584
QEDVGIHVV	9	Unmodified	_QEDVGIHVV_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2618713378906	2	498.261456	994.50836	0.45179	0.00022511	-0.41487	-0.00020671	0.036924	1.8398E-05	498.26160549482404	38.109	0.24638	37.807	37.691	37.937	-0.30137					9	4	3	0	0	0	0.035914	1	14134	14134		81.613	52.531	1	8115700			25544	4114	16323	16409	24537	24537					0.01088579546535584
QEEFIKITENF	11	Unmodified	_QEEFIKITENF_					0	0	0			REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	MSMS	HCT116MG_D190212_S1	1	699.3494873046875	2	699.351	1396.68745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.145	1	27.145	26.645	27.645	0								0	0	0	0.92235	1	9838	9838		17.113	0.96379	1		+		25545	11262	16324	16410	24538	24538					0.0049699932394560165
QEEFQEHEA	9	Unmodified	_QEEFQEHEA_					0	0	0		ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	MSMS	HCT116MG_D190212_S3	3	573.7371215820312	2	573.738542	1145.46253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.285	1	18.362	17.862	18.862	0.076334								0	0	0	0.62451	1	6200	6200		22.736	2.2827	1				25546	1540	16325	16411	24539	24539					-0.1043811042636662
QEEGLRQL	8	Unmodified	_QEEGLRQL_					0	0	0			REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	MSMS	HCT116MG_D190212_S3	3	486.7593688964844	2	486.759081	971.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.745	1	30.484	29.984	30.984	-0.26071								0	0	0	0.55681	1	11206	11206		39.957	1.3426	1		+		25547	10431	16326	16412	24540	24540					0.016716954037633514
QEEGTPAAL	9	Unmodified	_QEEGTPAAL_					0	0	0		ENST00000482294.1_1_22:39545359-39545569:-|nuORF	ENST00000482294.1_1_22:39545359-39545569:-|nuORF	ENST00000482294.1_1_22:39545359-39545569:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	915.4434204101562	1	915.441802	914.434526	0.7382	0.00067578	0.39132	0.00035823	1.1295	0.001034	915.4420059701649	32.146	0.31148	31.916	31.735	32.046	-0.23009					8	5	2	0	0	0	0.14171	1	11894	11894		49.933	9.9757	1	13194000			25548	8261	16327	16413	24541	24541					-0.026113886158100286
QEELMRQEA	9	Unmodified	_QEELMRQEA_					0	0	0		ENST00000485244.1_1_3:149243755-149260220:-|nuORF;ENSG00000018408|ENST00000360632|WWTR1	ENST00000485244.1_1_3:149243755-149260220:-|nuORF	ENST00000485244.1_1_3:149243755-149260220:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	567.2667236328125	2	567.266413	1132.51827	0.47235	0.00026795	-0.37772	-0.00021427	0.094626	5.3678E-05	567.2663644323815	26.95	0.26058	26.781	26.651	26.912	-0.16933					8	4	2	0	0	0	0.0035183	1	9714	9714		157.8	82.866	1	9931700			25549	933	16328	16414	24542	24542					-0.042686005103860225
QEELMRQEA	9	Unmodified	_QEELMRQEA_					0	0	0		ENST00000485244.1_1_3:149243755-149260220:-|nuORF;ENSG00000018408|ENST00000360632|WWTR1	ENST00000485244.1_1_3:149243755-149260220:-|nuORF	ENST00000485244.1_1_3:149243755-149260220:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	567.266413	1132.51827	0.53133	0.0003014	-0.45848	-0.00026008	0.072848	4.1324E-05	567.2659055383518	27.145	0.26486	26.792	26.606	26.871	-0.35254	-0.005784	-7.582E-05	NaN	157.8	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7784500			25550	933	16328	16414							-0.042686005103860225
QEELTLMPD	9	Unmodified	_QEELTLMPD_					0	0	0			REV__nc|ENSG00000105290|P51693|APLP1	REV__nc|ENSG00000105290|P51693|APLP1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2330932617188	2	538.25244	1074.49033	0.57721	0.00031068	0.5596	0.00030121	1.1368	0.00061189	538.2525647292696	25.713	0.52084	25.585	25.338	25.859	-0.12795					14	9	2	0	0	0	0.30117	1	9138	9138		30.637	11.38	1	7051900	+		25551	11245	16329	16415	24543	24543					-0.04393923490488305
QEELTPFF	8	Unmodified	_QEELTPFF_					0	0	0		CON__P81644	CON__P81644	CON__P81644	MULTI-MSMS	HCT116MG_D190212_S2	2	1010.4832153320312	1	1010.48294	1009.47566	0.71216	0.00071963	-0.18949	-0.00019147	0.52268	0.00052815	1010.4828001525958	57.464	0.15624	57.289	57.211	57.367	-0.17494					6	2	3	0	0	0	0.062806	1	22214	22214		109.63	49.24	1	35378000		+	25552	566	16330	16416	24544	24544					-0.02869627576342282
QEELTPFF	8	Unmodified	_QEELTPFF_					0	0	0		CON__P81644	CON__P81644	CON__P81644	MULTI-MSMS	HCT116MG_D190212_S2	2	505.74517822265625	2	505.745108	1009.47566	0.51617	0.00026105	-0.28413	-0.0001437	0.23205	0.00011736	505.7448759252261	57.464	0.15624	57.289	57.211	57.367	-0.17494					4	2	2	0	0	0	0.71835	1	22218	22218		20.871	7.3633	1	20541000		+	25553	566	16330	16416	24545	24545					-0.02869627576342282
QEELTPFF	8	Unmodified	_QEELTPFF_					0	0	0		CON__P81644	CON__P81644	CON__P81644	MULTI-MSMS	HCT116MG_D190212_S3	3	1010.4835205078125	1	1010.48294	1009.47566	0.82132	0.00082993	-0.34755	-0.00035119	0.47377	0.00047874	1010.4824727138217	57.556	0.15641	57.282	57.204	57.36	-0.27434					4	2	2	0	0	0	0.062806	1	21903	21903		109.63	49.24	1	5080700		+	25554	566	16330	16416	24546	24546					-0.02869627576342282
QEELTPFF	8	Unmodified	_QEELTPFF_					0	0	0		CON__P81644	CON__P81644	CON__P81644	MULTI-MATCH	HCT116MG_D190212_S3	3		2	505.745108	1009.47566	0.52397	0.000265	-0.86692	-0.00043844	-0.34295	-0.00017344	505.7449283583939	57.556	0.20852	57.282	57.151	57.36	-0.27434	-0.0037384	-0.00052952	NaN	20.871	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2003600		+	25555	566	16330	16416							-0.02869627576342282
QEELTPFF	8	Unmodified	_QEELTPFF_					0	0	0		CON__P81644	CON__P81644	CON__P81644	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1010.48294	1009.47566	0.80492	0.00081336	0.46801	0.00047292	1.2729	0.0012863	1010.4836330038321	57.522	0.15601	57.227	57.149	57.305	-0.29465	-0.038781	0.00056939	NaN	109.63	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1249600		+	25556	566	16330	16416							-0.02869627576342282
QEEMIQRYLSD	11	Unmodified	_QEEMIQRYLSD_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-MSMS	HCT116MG_D190212_S1	1	706.3299560546875	2	706.329741	1410.64493	0.77238	0.00054555	-0.45648	-0.00032243	0.31589	0.00022312	706.8310014032268	52.279	0.25792	52.279	52.125	52.383	0					9	4	3	0	0	0	0.71182	1	20018	20018		17.443	2.1942	1	9956400			25557	6643	16331	16417	24547	24547					-0.0439671907590764
QEEPLKSR	8	Unmodified	_QEEPLKSR_					0	0	0		nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	MULTI-MSMS	HCT116MG_D190212_S4	4	493.76702880859375	2	493.766906	985.519259	0.22418	0.00011069	0.21871	0.00010799	0.44289	0.00021868	493.76694791247337	29.548	0.26002	29.199	29.033	29.293	-0.34921					6	4	2	0	0	0	0.44838	1	10688	10688		45.7	1.7178	1	4792400			25558	6450	16332	16418	24548	24548					0.025919819208070294
QEEPQSLQA	9	Unmodified	_QEEPQSLQA_					0	0	0		ENST00000569161.1_1_15:74315283-74324931:+|nuORF;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;PML|p.K394Efs*22|1|0.53|ENSG00000140464|chr15:74023400-74023401|-/G|frameshift_variant;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	ENST00000569161.1_1_15:74315283-74324931:+|nuORF	ENST00000569161.1_1_15:74315283-74324931:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2457885742188	2	515.246003	1028.47745	0.26495	0.00013651	0.10795	5.5619E-05	0.37289	0.00019213	515.2458895907972	27.112	0.62485	26.942	26.755	27.38	-0.16933					16	11	2	0	0	0	0.22946	1	9763	9763		38.176	9.6811	1	2996200			25559	3666	16333	16419	24549	24549					-0.035646185583800616
QEEPYKHSWSP	11	Unmodified	_QEEPYKHSWSP_					0	0	0		L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|6|1|sense	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|6|1|sense	L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|6|1|sense	MULTI-SECPEP	HCT116MG_D190212_S1	1	694.3177490234375	2	694.317491	1386.62043	0.73439	0.0005099	-0.11135	-7.7309E-05	0.62304	0.00043259	694.3170017012587	36.286	0.31944	36.286	36.098	36.417	0					10	5	3	0	0	0	0.36475	1	13554	13554		1.3295	0	1	13679000			25560	9287	16334	16420	24550	24550					-0.05741611167127303
QEERETQVAA	10	Unmodified	_QEERETQVAA_					0	0	0		ENST00000591098.1_1_18:43684359-43698283:+|nuORF;ENSG00000152240|ENST00000282058|HAUS1	ENST00000591098.1_1_18:43684359-43698283:+|nuORF	ENST00000591098.1_1_18:43684359-43698283:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	580.7803955078125	2	580.780741	1159.54693	0.44164	0.0002565	-0.14966	-8.6918E-05	0.29198	0.00016958	580.7802859495429	18.519	0.20839	18.596	18.465	18.674	0.076334					7	3	3	0	0	0	0.48679	1	6319	6319		36.127	8.4982	1	4869900			25561	4142	16335	16421	24551	24551					-0.026461596095941786
QEERETQVAA	10	Unmodified	_QEERETQVAA_					0	0	0		ENST00000591098.1_1_18:43684359-43698283:+|nuORF;ENSG00000152240|ENST00000282058|HAUS1	ENST00000591098.1_1_18:43684359-43698283:+|nuORF	ENST00000591098.1_1_18:43684359-43698283:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	580.780741	1159.54693	0.45317	0.00026319	-0.083628	-4.8569E-05	0.36954	0.00021462	580.7805432341845	19.283	0.15641	18.914	18.836	18.992	-0.3695	0.20878	0.00010268	NaN	36.127	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4454900			25562	4142	16335	16421							-0.026461596095941786
QEERLLATA	9	Unmodified	_QEERLLATA_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7805786132812	2	515.780013	1029.54547	0.35589	0.00018356	1.099	0.00056685	1.4549	0.00075041	515.7802667939571	33.243	0.13135	32.953	32.918	33.049	-0.29013					7	5	2	0	0	0	0.0059958	1	12206	12206		128.93	78.999	1	5666600			25563	4181	16336	16422	24552	24552					0.03188251092296923
QEESCSHECN	10	Unmodified	_QEESCSHECN_					0	0	0		MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	MED12|p.E1337Kfs*8|1|0.26|ENSG00000184634|chrX:71130173-71130173|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	583.1984252929688	2	583.19787	1164.38119	0.60494	0.0003528	0.36386	0.0002122	0.9688	0.000565	583.1981000396464	25.804	0.366	25.804	25.614	25.98	0					16	6	3	0	0	0	0.88886	1	9300	9300		1.3295	0	1	18608000			25564	5778	16337	16423	24553	24553					-0.19442877452274843
QEESLATPP	9	Unmodified	_QEESLATPP_					0	0	0		ENST00000504490.2_1_4:113279997-113280900:+|nuORF	ENST00000504490.2_1_4:113279997-113280900:+|nuORF	ENST00000504490.2_1_4:113279997-113280900:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	972.4725341796875	1	971.468017	970.460741	0.71949	0.00069896	0.64811	0.00062962	1.3676	0.0013286	971.4682107436641	28.536	0.4165	28.33	28.177	28.593	-0.20593					11	7	2	0	0	0	0.2853	1	10378	10378		32.305	2.0807	1	3327500			25565	8444	16338	16424	24554	24554					-0.025671194443361856
QEEVFNTAV	9	Unmodified	_QEEVFNTAV_					0	0	0		ENSG00000090889|ENST00000374403|KIF4A;KIF4A|p.D669Rfs*13|1|0.06|ENSG00000090889|chrX:70376174-70376175|-/A|frameshift_variant;nc|ENSG00000090889|O95239-2|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	MSMS	HCT116MG_D190212_S4	4	518.750732421875	2	518.750921	1035.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.822	1	42.447	41.947	42.947	-0.37493								0	0	0	0.74083	1	15753	15753		17.113	4.5813	1				25566	1547	16339	16425	24555	24555					-0.029034305530103666
QEFAWAHDS	9	Unmodified	_QEFAWAHDS_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	HCT116MG_D190212_S3	3	546.3009643554688	2	545.733063	1089.45157	0.36075	0.00019688	0.39911	0.00021781	0.75986	0.00041468	545.7332808129308	22.744	0.40416	22.725	22.543	22.948	-0.018869					17	7	3	0	0	0	0.2025	1	8004	8004		25.399	0	1	24300000			25567	5770	16340	16426	24556	24556					-0.0895746801002133
QEFGVPHQY	9	Unmodified	_QEFGVPHQY_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MULTI-MSMS	HCT116MG_D190212_S2	2	552.758544921875	2	552.759081	1103.50361	0.25076	0.00013861	-0.43171	-0.00023863	-0.18095	-0.00010002	552.7586133226811	35.487	0.29846	35.345	35.139	35.437	-0.14245					8	5	2	0	0	0	0.0045841	1	13239	13239		142.08	94.331	1	21739000			25568	6230	16341	16427	24557	24557					-0.04400304596242677
QEFGVPVQPP	10	Unmodified	_QEFGVPVQPP_					0	0	0		ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant;ROBO1|p.R1504Sfs*40|1|0.01|ENSG00000169855|chr3:78606968-78606969|-/TGAC|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;ENST00000484514.1_1_3:78710132-78763649:-|nuORF;ROBO1|p.F755Lfs*28|2|0.21|ENSG00000169855|chr3:78661085-78661085|A/-|frameshift_variant	ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant	ROBO1|p.K1491Nfs*16|1|0.2|ENSG00000169855|chr3:78607004-78607004|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	366.20233154296875	3	366.525713	1096.55531	-0.21121	-7.7415E-05	-0.02802	-1.027E-05	-0.23923	-8.7685E-05	366.5256210312784	33.91	0.15557	33.735	33.657	33.812	-0.17512					4	2	2	0	0	0	0.30856	1	12584	12584		6.1918	6.1918	1	10761000			25569	5095	16342	16428	24558	24558					0.010894390976545765
QEFNLPVRY	9	Unmodified	_QEFNLPVRY_					0	0	0		ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	MULTI-MSMS	HCT116MG_D190212_S2	2	583.30419921875	2	583.303655	1164.59276	0.90153	0.00052587	0.12522	7.3041E-05	1.0267	0.00059891	583.3036539058758	46.659	0.25724	46.548	46.42	46.677	-0.11121					10	4	3	0	0	0	0.0062667	1	17807	17807		126.57	84.61	1	17737000			25570	3870	16343	16429	24559	24559					0.01704530363304002
QEFNRLLEA	9	Unmodified	_QEFNRLLEA_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	HCT116MG_D190212_S1	1	560.2935180664062	2	560.293288	1118.57202	0.34862	0.00019533	0.37016	0.0002074	0.71878	0.00040273	560.2934566549346	43.291	0.26031	43.291	43.108	43.368	0					7	4	2	0	0	0	0.02327	1	16363	16363		93.166	26.709	1	13649000			25571	800	16344	16430	24560	24560					0.017479399836247467
QEFNRLLEA	9	Unmodified	_QEFNRLLEA_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	HCT116MG_D190212_S3	3	560.2935180664062	2	560.293288	1118.57202	0.44656	0.0002502	0.14752	8.2655E-05	0.59408	0.00033286	560.2934447658573	43.52	0.46904	43.214	43.084	43.553	-0.30616					12	8	2	0	0	0	0.0035894	1	16244	16244		176.43	61.778	1	22289000			25572	800	16344	16430	24561	24561					0.017479399836247467
QEFNRLLEA	9	Unmodified	_QEFNRLLEA_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	HCT116MG_D190212_S4	4	560.2931518554688	2	560.293288	1118.57202	0.18267	0.00010235	0.014873	8.3331E-06	0.19754	0.00011068	560.293281938824	43.648	0.30132	43.274	43.114	43.415	-0.37433					9	5	2	0	0	0	0.0034669	1	16048	16048		163.69	60.333	1	5634300			25573	800	16344	16430	24562	24562					0.017479399836247467
QEFSKEEEY	9	Unmodified	_QEFSKEEEY_					0	0	0		ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	MULTI-MSMS	HCT116MG_D190212_S2	2	594.8088989257812	2	594.756401	1187.49825	0.81329	0.00048371	-0.86797	-0.00051623	-0.054679	-3.2521E-05	594.7561199130255	31.928	0.25817	31.693	31.576	31.834	-0.23433					6	4	2	0	0	0	0.60612	1	11777	11777		10.824	0	1	7031200			25574	6470	16345	16431	24563	24563					-0.08800072969347639
QEFVRDDP	8	Unmodified	_QEFVRDDP_					0	0	0			REV__ENSG00000165898|ENST00000556816|ISCA2	REV__ENSG00000165898|ENST00000556816|ISCA2	MULTI-MSMS	HCT116MG_D190212_S3	3	503.1074523925781	2	503.235439	1004.45632	0.29683	0.00014937	-2.1928	-0.0011035	-1.8959	-0.0009541	503.2350993282382	20.212	0.57281	20.26	19.947	20.52	0.048107					15	10	2	0	0	0	0.69862	1	7036	7036		23.148	3.7094	1	2369000	+		25575	13079	16346	16432	24564	24564					-0.045725838672410646
QEGDEEEQP	9	Unmodified	_QEGDEEEQP_					0	0	0			REV__ENST00000487761.5_1_6:32160013-32160290:-|nuORF	REV__ENST00000487761.5_1_6:32160013-32160290:-|nuORF	MSMS	HCT116MG_D190212_S4	4	530.2874755859375	2	530.706908	1059.39926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.936	1	17.761	17.261	18.261	-0.17501								0	0	0	0.76603	1	5986	5986		14.838	6.245	1		+		25576	14258	16347	16433	24565	24565					-0.12806095934274708
QEGGGGVAA	9	Unmodified	_QEGGGGVAA_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MSMS	HCT116MG_D190212_S1	1	745.3463745117188	1	745.347508	744.340232	0.89875	0.00066988	-0.13452	-0.00010026	0.76423	0.00056962	745.3472266852186	17.959	0.31288	17.959	17.828	18.141	0					11	5	3	0	0	0	0.031089	2	6162	6162;6166		85.272	7.2877	1	9697300			25577	3538	16348	16434	24566;24567	24566					-0.042164826472912864
QEGGGGVAA	9	Unmodified	_QEGGGGVAA_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MSMS	HCT116MG_D190212_S2	2	745.34814453125	1	745.347508	744.340232	0.76119	0.00056735	0.28864	0.00021513	1.0498	0.00078248	745.3475985636203	18.241	0.47029	17.884	17.754	18.224	-0.35647					23	8	4	0	0	0	0.035349	1	6258	6258		81.89	3.1622	1	97636000			25578	3538	16348	16434	24568	24568					-0.042164826472912864
QEGHQLYPD	9	Unmodified	_QEGHQLYPD_					0	0	0			REV__ENSG00000003393|ENST00000264276|ALS2	REV__ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	HCT116MG_D190212_S3	3	544.248291015625	2	543.74617	1085.47779	0.37969	0.00020645	0.38332	0.00020843	0.76301	0.00041488	544.2477129681072	31.282	0.20885	31.022	30.917	31.126	-0.26071					5	3	2	0	0	0	0.2458	1	11453	11453		13.042	0	1	3404700	+		25579	10465	16349	16435	24569	24569					-0.061531988385240766
QEGLQAAPSGP	11	Unmodified	_QEGLQAAPSGP_					0	0	0		ENST00000356387.6_1_7:102087789-102087951:+|nuORF	ENST00000356387.6_1_7:102087789-102087951:+|nuORF	ENST00000356387.6_1_7:102087789-102087951:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	527.626220703125	2	527.76182	1053.50909	0.46646	0.00024618	0.17337	9.1496E-05	0.63983	0.00033768	527.7617778862979	27.034	0.83304	26.865	26.651	27.484	-0.16933					29	15	2	0	0	0	0.54229	1	9647	9647		41.84	3.6641	1	10562000			25580	7297	16350	16436	24570	24570					-0.015526258044474162
QEGVEVRVA	9	Unmodified	_QEGVEVRVA_					0	0	0		nc|ENSG00000115652|Q8NBZ7-3|UXS1;nc|ENSG00000115652|Q8NBZ7|UXS1;ENSG00000115652|ENST00000283148|UXS1	nc|ENSG00000115652|Q8NBZ7-3|UXS1	nc|ENSG00000115652|Q8NBZ7-3|UXS1	MSMS	HCT116MG_D190212_S3	3	493.766845703125	2	493.766906	985.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.45	1	29.214	28.714	29.714	-0.23655								0	0	0	0.34992	1	10700	10700		36.506	0.37917	1				25581	2478	16351	16437	24571	24571					0.025919819208070294
QEGVIDQIS	9	Unmodified	_QEGVIDQIS_					0	0	0		ENST00000496688.1_1_9:123589031-123593637:-|nuORF;ENST00000373903.1_1_9:123586619-123589169:-|nuORF;PSMD5|p.G278Wfs*8|2|0.31|ENSG00000095261|chr9:120824668-120824669|-/A|frameshift_variant;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5	ENST00000496688.1_1_9:123589031-123593637:-|nuORF	ENST00000496688.1_1_9:123589031-123593637:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	495.2559814453125	2	494.750921	987.48729	0.31055	0.00015364	2.7004	0.001336	3.0109	0.0014897	494.7507364826474	30.125	1.2342	30.125	29.529	30.763	0					61	23	4	0	0	0	0.16306	1	10963	10963		45.7	1.8413	1	91316000			25582	1606	16352	16438	24572	24572					-0.006954305530030069
QEGVVILI	8	Unmodified	_QEGVVILI_					0	0	0		ENST00000474287.5_1_3:133465176-133472639:+|nuORF	ENST00000474287.5_1_3:133465176-133472639:+|nuORF	ENST00000474287.5_1_3:133465176-133472639:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	870.5298461914062	1	870.529495	869.522219	0.98441	0.00085696	0.74477	0.00064835	1.7292	0.0015053	870.5299780067239	59.914	2.7992	59.642	58.309	61.109	-0.27156					83	56	2	0	0	0	0.87576	1	22733	22733		0.79363	0	1	11418000			25583	8184	16353	16439	24573	24573					0.08223857045629757
QEHENIIVA	9	Unmodified	_QEHENIIVA_					0	0	0		CMIP|p.A230T|1|0.19|ENSG00000153815|chr16:81660890-81660890|G/A|missense_variant;nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	CMIP|p.A230T|1|0.19|ENSG00000153815|chr16:81660890-81660890|G/A|missense_variant	CMIP|p.A230T|1|0.19|ENSG00000153815|chr16:81660890-81660890|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	526.7722778320312	2	526.772188	1051.52982	0.52767	0.00027796	-0.45108	-0.00023762	0.076587	4.0344E-05	526.771994679466	33.151	0.36276	33.151	32.985	33.348	0					8	6	2	0	0	0	0.023778	1	12270	12270		92.653	50.814	1	10924000			25584	485	16354	16440	24574	24574					0.006119645752505676
QEHENIIVA	9	Unmodified	_QEHENIIVA_					0	0	0		CMIP|p.A230T|1|0.19|ENSG00000153815|chr16:81660890-81660890|G/A|missense_variant;nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	CMIP|p.A230T|1|0.19|ENSG00000153815|chr16:81660890-81660890|G/A|missense_variant	CMIP|p.A230T|1|0.19|ENSG00000153815|chr16:81660890-81660890|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7720336914062	2	526.772188	1051.52982	0.75813	0.00039936	-0.1048	-5.5204E-05	0.65333	0.00034416	526.772043081536	33.458	0.30771	33.265	33.123	33.43	-0.19297					11	5	3	0	0	0	0.0062667	1	12424	12424		126.57	76.633	1	42482000			25585	485	16354	16440	24575	24575					0.006119645752505676
QEHENIIVA	9	Unmodified	_QEHENIIVA_					0	0	0		CMIP|p.A230T|1|0.19|ENSG00000153815|chr16:81660890-81660890|G/A|missense_variant;nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	CMIP|p.A230T|1|0.19|ENSG00000153815|chr16:81660890-81660890|G/A|missense_variant	CMIP|p.A230T|1|0.19|ENSG00000153815|chr16:81660890-81660890|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	526.772216796875	2	526.772188	1051.52982	0.44052	0.00023205	-0.039853	-2.0993E-05	0.40066	0.00021106	526.7721882235325	33.516	0.2595	33.226	33.096	33.356	-0.29013					7	4	2	0	0	0	0.1535	1	12330	12330		47.594	11.467	1	12586000			25586	485	16354	16440	24576	24576					0.006119645752505676
QEHFQALTA	9	Unmodified	_QEHFQALTA_					0	0	0		ENSG00000226742|ENST00000451882|HSBP1L1	ENSG00000226742|ENST00000451882|HSBP1L1	ENSG00000226742|ENST00000451882|HSBP1L1	MSMS	HCT116MG_D190212_S1	1	522.7588500976562	2	522.759081	1043.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.593	1	34.593	34.093	35.093	0								0	0	0	0.1107	1	12840	12840		53.833	28.433	1				25587	6489	16355	16441	24577	24577					-0.01640304596230635
QEHFQALTA	9	Unmodified	_QEHFQALTA_					0	0	0		ENSG00000226742|ENST00000451882|HSBP1L1	ENSG00000226742|ENST00000451882|HSBP1L1	ENSG00000226742|ENST00000451882|HSBP1L1	MSMS	HCT116MG_D190212_S2	2	522.759521484375	2	522.759081	1043.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.708	1	34.55	34.05	35.05	-0.15834								0	0	0	0.0043193	1	12922	12922		118.89	68.962	1				25588	6489	16355	16441	24578	24578					-0.01640304596230635
QEHFSNVV	8	Unmodified	_QEHFSNVV_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	HCT116MG_D190212_S1	1	480.2334289550781	2	480.232699	958.450845	0.092314	4.4332E-05	0.51984	0.00024964	0.61215	0.00029398	480.23304356376497	32.508	0.26103	32.508	32.378	32.639	0					6	4	2	0	0	0	0.46892	1	12028	12028		43.858	23.405	1	6007700			25589	3567	16356	16442	24579	24579					-0.030042626590443433
QEHFSNVV	8	Unmodified	_QEHFSNVV_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	HCT116MG_D190212_S2	2	480.23248291015625	2	480.232699	958.450845	0.2866	0.00013764	0.37508	0.00018013	0.66169	0.00031776	480.2327802448672	32.771	0.25868	32.56	32.43	32.688	-0.21135					6	4	2	0	0	0	0.81821	1	12163	12163		9.3474	0.75416	1	18485000			25590	3567	16356	16442	24580	24580					-0.030042626590443433
QEHFTHNTV	9	Unmodified	_QEHFTHNTV_					0	0	0		PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	556.7600708007812	2	556.759612	1111.50467	0.53225	0.00029633	-0.073687	-4.1026E-05	0.45856	0.00025531	556.7595332600766	21.093	0.53289	21.093	20.852	21.385	0					20	9	4	0	0	0	1.2936E-22	1	7390	7390		292.78	185.59	1	125680000			25591	3592	16357	16443	24581	24581					-0.04662090227338922
QEHFTHNTV	9	Unmodified	_QEHFTHNTV_					0	0	0		PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	371.5086364746094	3	371.508834	1111.50467	-0.020613	-7.658E-06	-0.070613	-2.6233E-05	-0.091226	-3.3891E-05	371.50871296306013	21.093	0.32257	21.093	20.956	21.279	0					12	5	4	0	0	0	0.063511	1	7405	7405		53.404	29.614	1	40505000			25592	3592	16357	16443	24582	24582					-0.04662090227338922
QEHFTHNTV	9	Unmodified	_QEHFTHNTV_					0	0	0		PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	556.759521484375	2	556.759612	1111.50467	0.23693	0.00013191	-0.022307	-1.242E-05	0.21462	0.00011949	556.759602087249	21.734	0.52006	21.349	21.167	21.687	-0.38503					27	9	5	0	0	0	1.3618E-20	1	7650	7650		275.44	156.55	1	488790000			25593	3592	16357	16443	24583	24583					-0.04662090227338922
QEHFTHNTV	9	Unmodified	_QEHFTHNTV_					0	0	0		PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	371.5086669921875	3	371.508834	1111.50467	-0.32214	-0.00011968	0.087366	3.2457E-05	-0.23477	-8.7221E-05	371.5088203663637	21.734	0.3638	21.349	21.167	21.531	-0.38503					18	6	4	0	0	0	0.23138	1	7666	7666		28.495	10.121	1	119440000			25594	3592	16357	16443	24584	24584					-0.04662090227338922
QEHFTHNTV	9	Unmodified	_QEHFTHNTV_					0	0	0		PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1112.512451171875	1	1112.51195	1111.50467	0.4494	0.00049996	0.26123	0.00029063	0.71063	0.00079059	1112.5121154629423	21.687	0.25982	21.302	21.219	21.479	-0.38503					10	4	3	0	0	0	2.7271E-05	1	7672	7672		211.85	133.13	1	16622000			25595	3592	16357	16443	24585	24585					-0.04662090227338922
QEHFTHNTV	9	Unmodified	_QEHFTHNTV_					0	0	0		PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	556.7596435546875	2	556.759612	1111.50467	0.25179	0.00014019	0.096659	5.3816E-05	0.34845	0.000194	556.75957990304	20.812	0.62451	20.847	20.558	21.183	0.034473					25	11	4	0	0	0	2.0921E-29	1	7221	7221		310.37	191.47	1	57387000			25596	3592	16357	16443	24586	24586					-0.04662090227338922
QEHFTHNTV	9	Unmodified	_QEHFTHNTV_					0	0	0		PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	371.508544921875	3	371.508834	1111.50467	-0.22689	-8.4291E-05	-0.011798	-4.3829E-06	-0.23869	-8.8674E-05	371.50876687375523	20.827	0.36428	20.862	20.714	21.079	0.034473					10	6	2	0	0	0	0.32978	1	7223	7223		26.021	14.526	1	24385000			25597	3592	16357	16443	24587	24587					-0.04662090227338922
QEHFTHNTV	9	Unmodified	_QEHFTHNTV_					0	0	0		PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	PPP3CA|p.C256Vfs*47|1|0.44|ENSG00000138814|chr4:101093793-101093793|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	556.7599487304688	2	556.759612	1111.50467	0.36037	0.00020064	-0.15344	-8.5431E-05	0.20693	0.00011521	556.759310084363	21.255	0.25974	21.045	20.915	21.175	-0.20959					7	4	2	0	0	0	4.4167E-08	1	7335	7335		225.01	106.11	1	10600000			25598	3592	16357	16443	24588	24588					-0.04662090227338922
QEHFWKFMKRQ	11	Unmodified	_QEHFWKFMKRQ_					0	0	0		CACNA1S|p.R1534W|1|0.4|ENSG00000081248|chr1:201047183-201047183|G/A|missense_variant	CACNA1S|p.R1534W|1|0.4|ENSG00000081248|chr1:201047183-201047183|G/A|missense_variant	CACNA1S|p.R1534W|1|0.4|ENSG00000081248|chr1:201047183-201047183|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2655029296875	3	522.266239	1563.77689	0.31259	0.00016326	-1.2647	-0.0006605	-0.95209	-0.00049724	522.2656758003217	18.623	0.4688	18.693	18.302	18.771	0.069159					10	8	2	0	0	0	0.74191	1	6365	6365		0.92553	0	1	2854200			25599	309	16358	16444	24589	24589					0.017549755223171815
QEHFWKFMKRQ	11	Unmodified	_QEHFWKFMKRQ_					0	0	0		CACNA1S|p.R1534W|1|0.4|ENSG00000081248|chr1:201047183-201047183|G/A|missense_variant	CACNA1S|p.R1534W|1|0.4|ENSG00000081248|chr1:201047183-201047183|G/A|missense_variant	CACNA1S|p.R1534W|1|0.4|ENSG00000081248|chr1:201047183-201047183|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	522.2659301757812	3	522.266239	1563.77689	0.28385	0.00014824	-0.82123	-0.0004289	-0.53738	-0.00028065	522.2657824456312	19.014	0.36387	18.827	18.609	18.973	-0.18674					9	6	2	0	0	0	0.74191	1	6433	6433		0.36667	0	1	1373900			25600	309	16358	16444	24590	24590					0.017549755223171815
QEHGLKYPA	9	Unmodified	_QEHGLKYPA_					0	0	0		nc|ENSG00000242485|Q9BYC9-2|MRPL20;ENSG00000242485|ENST00000344843|MRPL20;MRPL20|p.I87S|1|0.15|ENSG00000242485|chr1:1405825-1405825|A/C|missense_variant	nc|ENSG00000242485|Q9BYC9-2|MRPL20	nc|ENSG00000242485|Q9BYC9-2|MRPL20	MULTI-MSMS	HCT116MG_D190212_S2	2	521.76953125	2	521.769448	1041.52434	0.37712	0.00019677	-0.24066	-0.00012557	0.13646	7.12E-05	521.7692127503846	24.802	0.31107	24.426	24.349	24.66	-0.37521					7	5	2	0	0	0	0.12205	1	8926	8926		53.833	9.4258	1	13534000			25601	6552	16359	16445	24591	24591					0.005242857834218739
QEHIAKQF	8	Unmodified	_QEHIAKQF_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant;ITPR3|p.K608Sfs*66|1|0.34|ENSG00000096433|chr6:33667898-33667898|A/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	500.76416015625	2	500.764166	999.513779	0.42636	0.00021351	-0.38502	-0.0001928	0.041342	2.0703E-05	500.7639199291894	24.019	0.26115	24.019	23.889	24.15	0					6	4	2	0	0	0	0.23195	1	8609	8609		67.344	37.119	1	5527100			25602	1619	16360	16446	24592	24592					0.014003031290030776
QEHIAKQF	8	Unmodified	_QEHIAKQF_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant;ITPR3|p.K608Sfs*66|1|0.34|ENSG00000096433|chr6:33667898-33667898|A/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	500.7644348144531	2	500.764166	999.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.665	1	24.285	23.785	24.785	-0.38003								0	0	0	1.0882E-29	1	8848	8848		223.06	141.45	1				25603	1619	16360	16446	24593	24593					0.014003031290030776
QEHKFIEA	8	Unmodified	_QEHKFIEA_					0	0	0		nc|ENSG00000150672|Q15700-4|DLG2;nc|ENSG00000150672|Q15700-5|DLG2;nc|ENSG00000150672|Q15700-3|DLG2;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000150672|Q15700|DLG2;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;ENSG00000150672|ENST00000376104|DLG2	nc|ENSG00000150672|Q15700-4|DLG2	nc|ENSG00000150672|Q15700-4|DLG2	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2567443847656	2	501.256174	1000.49779	0.35699	0.00017894	1.3082	0.00065577	1.6652	0.00083471	501.25666698599844	26.619	0.68104	26.258	26.076	26.757	-0.36164					21	12	3	0	0	0	0.44484	1	9664	9664		46.021	20.622	1	16770000			25604	9499	16361	16447	24594	24594					-0.0024340310790194053
QEHKTDEMHTA	11	Unmodified	_QEHKTDEMHTA_					0	0	0		ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;ANKRD17|p.L2249Yfs*84|1|0.34|ENSG00000132466|chr4:73090884-73090884|G/-|frameshift_variant;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1	ANKRD17|p.K886Sfs*4|1|0.39|ENSG00000132466|chr4:73139959-73139959|T/-|frameshift_variant;ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	HCT116MG_D190212_S2	2	663.7911376953125	2	663.790783	1325.56701	0.29908	0.00019852	0.97875	0.00064968	1.2778	0.00084821	663.7915108557545	15.111	0.36496	14.784	14.654	15.019	-0.32684					10	6	3	0	0	0	6.9376E-07	2	5020	4974;5020		179.28	142.78	1	4244900			25605	3147;137	16362	16448	24595;24596	24596					-0.08274731941310165
QEHLIEKY	8	Unmodified	_QEHLIEKY_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2772827148438	2	530.277106	1058.53966	0.29277	0.00015525	-0.6528	-0.00034617	-0.36003	-0.00019091	530.7778573444187	27.257	0.3126	27.257	27.073	27.386	0					7	5	2	0	0	0	0.061818	1	9879	9879		110.67	66.816	1	5602900			25606	1425	16363	16449	24597	24597					0.01273152580643
QEHLIEKY	8	Unmodified	_QEHLIEKY_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S2	2	530.277099609375	2	530.277106	1058.53966	0.49364	0.00026176	0.098533	5.225E-05	0.59217	0.00031401	530.2769331330138	27.666	0.25844	27.324	27.191	27.449	-0.34201					9	4	3	0	0	0	0.022074	1	10084	10084		195.45	110.18	1	23702000			25607	1425	16363	16449	24598	24598					0.01273152580643
QEHLIEKY	8	Unmodified	_QEHLIEKY_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S2	2	353.8538513183594	3	353.85383	1058.53966	-0.071639	-2.535E-05	0.18612	6.5858E-05	0.11448	4.0508E-05	353.85392337134357	27.663	0.20735	27.321	27.191	27.398	-0.34201					7	3	3	0	0	0	0.53596	1	10086	10086		31.268	15.119	1	14473000			25608	1425	16363	16449	24599	24599					0.01273152580643
QEHLIEKY	8	Unmodified	_QEHLIEKY_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MSMS	HCT116MG_D190212_S3	3	530.2772216796875	2	530.277106	1058.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.493	1	27.316	26.816	27.816	-0.1773								0	0	0	0.00062269	1	9910	9910		125.53	75.596	1				25609	1425	16363	16449	24600	24600					0.01273152580643
QEHLKDEPG	9	Unmodified	_QEHLKDEPG_					0	0	0			REV__ENSG00000110195|ENST00000393676|FOLR1	REV__ENSG00000110195|ENST00000393676|FOLR1	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.2201538085938	2	526.753995	1051.49344	0.34011	0.00017915	-0.10721	-5.6472E-05	0.2329	0.00012268	526.7539384560121	20.323	0.20985	19.943	19.813	20.023	-0.37949					5	3	2	0	0	0	0.22899	1	7119	7119		13.042	2.2185	1	5167200	+		25610	11394	16364	16450	24601	24601					-0.030249123214844076
QEHMFEVL	8	Unmodified	_QEHMFEVL_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.N955Tfs*59|2|0.31|ENSG00000163939|chr3:52589171-52589171|T/-|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.28|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;ENST00000462207.1_1_3:52620428-52643468:-|nuORF;ENST00000480064.1_1_3:52643285-52649409:-|nuORF	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MSMS	HCT116MG_D190212_S2	2	516.7976684570312	2	516.744585	1031.47462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.698	1	50.526	50.026	51.026	-0.1719								0	0	0	0.27832	1	19435	19435		57.471	19.497	1				25611	4651	16365	16451	24602	24602					-0.03986165216883819
QEHMSISGSSA	11	Unmodified	_QEHMSISGSSA_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	HCT116MG_D190212_S1	1	567.2481689453125	2	567.24822	1132.48189	0.47685	0.00027049	0.16665	9.4532E-05	0.6435	0.00036502	567.2481952983077	24.637	0.20903	24.637	24.516	24.725	0					6	3	2	0	0	0	0.17741	1	8857	8857		78.06	61.911	1	7899200			25612	5576	16366	16452	24603	24603					-0.0790547740709826
QEHMSISGSSA	11	Unmodified	_QEHMSISGSSA_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	HCT116MG_D190212_S2	2	567.2486572265625	2	567.24822	1132.48189	0.51078	0.00028974	0.12586	7.1395E-05	0.63664	0.00036113	567.2481231631148	25.073	0.36411	24.698	24.556	24.92	-0.37521					14	6	4	0	0	0	8.9441E-06	1	9026	9026		174.48	138.35	1	33911000			25613	5576	16366	16452	24604	24604					-0.0790547740709826
QEHMSISGSSA	11	Unmodified	_QEHMSISGSSA_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MATCH	HCT116MG_D190212_S3	3		2	567.24822	1132.48189	0.4932	0.00027977	-0.18304	-0.00010383	0.31017	0.00017594	567.7495829887362	24.815	0.15599	24.731	24.601	24.757	-0.083694	0.042864	-0.00023664	NaN	174.48	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1396700			25614	5576	16366	16452							-0.0790547740709826
QEHNYFPCAA	10	Unmodified	_QEHNYFPCAA_					0	0	0			REV__ENST00000545717.1_1_12:31242007-31244021:+|nuORF	REV__ENST00000545717.1_1_12:31242007-31244021:+|nuORF	MSMS	HCT116MG_D190212_S2	2	590.248779296875	2	590.248023	1178.48149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.338	1	15.996	15.496	16.496	-0.34183								0	0	0	0.91638	1	5491	5491		12.241	2.1667	1		+		25615	10344	16367	16453	24605	24605					-0.10060852336300741
QEHPDLARRTA	11	Unmodified	_QEHPDLARRTA_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;nc|ENSG00000108654|P17844-2|DDX5;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	431.8936767578125	3	431.893459	1292.65855	0.077465	3.3457E-05	-0.31432	-0.00013575	-0.23686	-0.0001023	431.89337059541157	18.095	0.57356	18.095	17.88	18.454	0					20	10	3	0	0	0	0.61628	1	6197	6197		33.632	22.733	1	3603300			25616	656	16368	16454	24606	24606					0.023923195381712503
QEHPDLARRTA	11	Unmodified	_QEHPDLARRTA_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;nc|ENSG00000108654|P17844-2|DDX5;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	647.3374633789062	2	647.33655	1292.65855	0.76568	0.00049565	-0.27232	-0.00017629	0.49335	0.00031936	647.837922222846	18.086	0.46939	18.086	17.88	18.35	0					14	8	2	0	0	0	0.17693	1	6203	6203		75.571	60.732	1	4928200			25617	656	16368	16454	24607	24607					0.023923195381712503
QEHPDLARRTA	11	Unmodified	_QEHPDLARRTA_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;nc|ENSG00000108654|P17844-2|DDX5;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	647.3367309570312	2	647.33655	1292.65855	0.33881	0.00021933	0.090719	5.8726E-05	0.42953	0.00027805	647.3365971460141	18.778	0.46848	18.415	18.217	18.686	-0.36325					19	8	3	0	0	0	0.033693	1	6475	6475		143.22	120.56	1	20936000			25618	656	16368	16454	24608	24608					0.023923195381712503
QEHPDLARRTA	11	Unmodified	_QEHPDLARRTA_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;nc|ENSG00000108654|P17844-2|DDX5;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	431.8931579589844	3	431.893459	1292.65855	-0.30717	-0.00013267	0.21473	9.2741E-05	-0.092444	-3.9926E-05	431.8934586062807	18.762	0.36443	18.399	18.269	18.634	-0.36325					12	6	2	0	0	0	0.33096	1	6477	6477		61.165	38.506	1	14157000			25619	656	16368	16454	24609	24609					0.023923195381712503
QEHPELAVL	9	Unmodified	_QEHPELAVL_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6;ENST00000589982.1_1_17:74714813-74716591:-|nuORF	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2774658203125	2	518.277106	1034.53966	0.33152	0.00017182	-0.51703	-0.00026797	-0.18551	-9.6147E-05	518.276632017139	44.834	0.20764	44.834	44.673	44.88	0					8	3	3	0	0	0	0.020181	1	16967	16967		96.285	34.927	1	24144000			25620	1238	16369	16455	24610	24610					0.023771525806068894
QEHPELAVL	9	Unmodified	_QEHPELAVL_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6;ENST00000589982.1_1_17:74714813-74716591:-|nuORF	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2774047851562	2	518.277106	1034.53966	0.50181	0.00026008	0.027692	1.4352E-05	0.52951	0.00027443	518.2771191719337	44.75	0.52204	44.665	44.482	45.004	-0.084797					20	9	3	0	0	0	0.010834	1	17006	17006		111.29	39.365	1	95700000			25621	1238	16369	16455	24611	24611					0.023771525806068894
QEHPILGQP	9	Unmodified	_QEHPILGQP_					0	0	0		ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant;ENSG00000152348|ENST00000282185|ATG10;ENST00000508814.5_1_5:81474325-81572030:+|nuORF	ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant	ATG10|p.F161Lfs*12|1|0.27|ENSG00000152348|chr5:82252586-82252586|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	509.7696838378906	2	509.769448	1017.52434	0.5504	0.00028058	-0.24765	-0.00012624	0.30275	0.00015433	509.76925714272863	31.708	0.51809	31.459	31.043	31.561	-0.24883					17	9	3	0	0	0	0.020353	1	11710	11710		96.111	10.839	1	12963000			25622	210	16370	16456	24612	24612					0.016282857834426068
QEHPVVLLP	9	Unmodified	_QEHPVVLLP_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2978515625	2	516.297842	1030.58113	0.44174	0.00022807	-0.25228	-0.00013025	0.18947	9.7821E-05	516.2976227425786	48.372	0.50721	48.228	47.982	48.49	-0.1437					22	9	3	0	0	0	0.016701	1	18472	18472		99.799	31.718	1	203550000			25623	2547	16371	16457	24613	24613					0.06706333339957382
QEHPVVLLP	9	Unmodified	_QEHPVVLLP_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	HCT116MG_D190212_S3	3	516.2986450195312	2	516.297842	1030.58113	0.5318	0.00027457	0.84319	0.00043534	1.375	0.00070991	516.2986307481298	48.617	0.77722	48.301	47.775	48.552	-0.31596					18	14	2	0	0	0	0.061422	1	18313	18313		69.105	8.7154	1	5867300			25624	2547	16371	16457	24614	24614					0.06706333339957382
QEHSKAFMV	9	Unmodified	_QEHSKAFMV_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-MSMS	HCT116MG_D190212_S1	1	538.7634887695312	2	538.763309	1075.51206	0.2693	0.00014509	-0.22215	-0.00011969	0.047144	2.5399E-05	538.7632351597949	32.232	0.26005	32.232	32.066	32.326	0					12	4	3	0	0	0	0.0046822	1	11899	11899		140.63	98.794	1	17443000			25625	6295	16372	16458	24615	24615					-0.02267073951270504
QEHSKAFMV	9	Unmodified	_QEHSKAFMV_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.7635498046875	2	538.763309	1075.51206	0.366	0.00019719	0.11194	6.0311E-05	0.47794	0.0002575	538.7633651371544	32.51	0.41713	32.28	32.15	32.567	-0.23009					11	7	2	0	0	0	0.00046881	1	12034	12034		195.45	134.09	1	68231000			25626	6295	16372	16458	24616	24616					-0.02267073951270504
QEHWFYFEAKW	11	Unmodified	_QEHWFYFEAKW_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1;nc|ENSG00000153531|Q8NDY3-2|ADPRHL1;nc|ENSG00000153531|Q8NDY3|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-SECPEP	HCT116MG_D190212_S4	4	786.386474609375	2	785.859326	1569.7041	0.84832	0.00066666	0.56107	0.00044092	1.4094	0.0011076	785.8597655680911	22.482	0.46737	22.254	21.884	22.351	-0.22777					11	8	2	0	0	0	0.3659	1	7835	7835		0.96228	0	1	2102100			25627	4193	16373	16459	24617	24617					-0.05796454999472189
QEHWVHEA	8	Unmodified	_QEHWVHEA_					0	0	0		ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2364501953125	2	518.235773	1034.45699	0.50649	0.00026248	-0.14948	-7.7466E-05	0.35701	0.00018501	518.235619079376	24.072	0.36334	23.689	23.56	23.923	-0.38324					10	6	2	0	0	0	0.0027527	1	8626	8626		180.01	141.86	1	15243000			25628	2166	16374	16460	24618	24618					-0.058857444275190574
QEHWVHEA	8	Unmodified	_QEHWVHEA_					0	0	0		ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	MULTI-SECPEP	HCT116MG_D190212_S3	3	518.2153930664062	2	518.235773	1034.45699	0.24652	0.00012776	0.43282	0.0002243	0.67934	0.00035206	518.2359820450944	23.305	0.15623	23.265	23.187	23.343	-0.03968					4	2	2	0	0	0	0.28533	1	8230	8230		26.884	12.045	1	1465400			25629	2166	16374	16460	24619	24619					-0.058857444275190574
QEHWVHEA	8	Unmodified	_QEHWVHEA_					0	0	0		ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	518.235773	1034.45699	0.33317	0.00017266	1.4786	0.00076626	1.8118	0.00093892	518.2364901864476	23.41	0.15668	23.41	23.314	23.471	0	0.072492	0.00019628	NaN	26.884	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3322700			25630	2166	16374	16460							-0.058857444275190574
QEIATVVVP	9	Unmodified	_QEIATVVVP_					0	0	0		ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	MULTI-MSMS	HCT116MG_D190212_S2	2	955.5467529296875	1	955.545874	954.538597	0.89131	0.00085169	-0.17608	-0.00016825	0.71523	0.00068343	955.545693676171	47.121	0.41223	47	46.769	47.182	-0.12175					11	7	2	0	0	0	0.0062667	1	17963	17963		126.57	37.612	1	18262000			25631	3615	16375	16461	24620	24620					0.059509382117198584
QEIATVVVP	9	Unmodified	_QEIATVVVP_					0	0	0		ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	MULTI-MSMS	HCT116MG_D190212_S3	3	956.5479736328125	1	955.545874	954.538597	0.66608	0.00063647	-0.16575	-0.00015839	0.50032	0.00047808	955.5460248224251	47.324	0.3288	47.009	46.801	47.13	-0.31524					11	6	3	0	0	0	0.010834	1	17788	17788		111.29	40.153	1	6226600			25632	3615	16375	16461	24621	24621					0.059509382117198584
QEIATVVVP	9	Unmodified	_QEIATVVVP_					0	0	0		ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	MULTI-MSMS	HCT116MG_D190212_S4	4	955.546630859375	1	955.545874	954.538597	0.7095	0.00067796	0.27378	0.00026161	0.98328	0.00093957	955.5461042050579	47.384	0.19488	47.013	46.848	47.043	-0.37038					5	4	2	0	0	0	0.010834	1	17531	17531		111.29	40.153	1	3952900			25633	3615	16375	16461	24622	24622					0.059509382117198584
QEIEHVFLV	9	Unmodified	_QEIEHVFLV_					0	0	0		nc|ENSG00000165752|Q86UX6-2|STK32C;ENSG00000165752|ENST00000298630|STK32C	nc|ENSG00000165752|Q86UX6-2|STK32C	nc|ENSG00000165752|Q86UX6-2|STK32C	MULTI-MSMS	HCT116MG_D190212_S2	2	557.3009033203125	2	557.300581	1112.58661	0.35778	0.00019939	-0.0014935	-8.3231E-07	0.35629	0.00019856	557.3005293480624	52.823	0.30868	52.634	52.449	52.758	-0.18922					16	5	4	0	0	0	1.2354E-05	1	20307	20307		214.41	149.17	1	40068000			25634	4798	16376	16462	24623	24623					0.03482012131757983
QEIEHVFLV	9	Unmodified	_QEIEHVFLV_					0	0	0		nc|ENSG00000165752|Q86UX6-2|STK32C;ENSG00000165752|ENST00000298630|STK32C	nc|ENSG00000165752|Q86UX6-2|STK32C	nc|ENSG00000165752|Q86UX6-2|STK32C	MULTI-MSMS	HCT116MG_D190212_S3	3	557.300537109375	2	557.300581	1112.58661	0.56583	0.00031534	-0.28728	-0.0001601	0.27855	0.00015524	557.3004407728915	53.062	0.2614	52.759	52.617	52.878	-0.30305					8	4	2	0	0	0	0.010834	2	20095	20053;20095		111.29	62.941	1	6121900			25635	4798	16376	16462	24624;24625	24625					0.03482012131757983
QEIEHVFLV	9	Unmodified	_QEIEHVFLV_					0	0	0		nc|ENSG00000165752|Q86UX6-2|STK32C;ENSG00000165752|ENST00000298630|STK32C	nc|ENSG00000165752|Q86UX6-2|STK32C	nc|ENSG00000165752|Q86UX6-2|STK32C	MULTI-MATCH	HCT116MG_D190212_S1	1		2	557.300581	1112.58661	0.49572	0.00027627	-0.10852	-6.0479E-05	0.3872	0.00021579	557.3005525836121	52.652	0.20507	52.652	52.485	52.69	0	-0.030053	2.5174E-05	NaN	214.41	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9620700			25636	4798	16376	16462							0.03482012131757983
QEILIDSLSK	10	Unmodified	_QEILIDSLSK_					0	0	0		ENSG00000165972|ENST00000344280|CCDC38;CCDC38|p.K536Nfs*12|1|0.47|ENSG00000165972|chr12:95867160-95867160|T/-|frameshift_variant;CCDC38|p.K436N|1|0.08|ENSG00000165972|chr12:95872431-95872431|C/A|missense_variant	ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	MSMS	HCT116MG_D190212_S2	2	573.3242797851562	2	573.324254	1144.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.019	1	24.644	24.144	25.144	-0.37521								0	0	0	0.82952	1	8991	8991		24.991	3.2443	1				25637	351	16377	16463	24626	24626					0.0674224661208882
QEINTLLEA	9	Unmodified	_QEINTLLEA_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7744750976562	2	515.774396	1029.53424	0.58218	0.00030027	-0.19113	-9.8578E-05	0.39105	0.00020169	515.7741959995936	48.703	0.41345	48.387	48.244	48.657	-0.31596					11	7	2	0	0	0	0.0094709	1	18325	18325		114.65	21.996	1	12374000			25638	1193	16378	16464	24627	24627					0.02065428998139396
QEINTLLEA	9	Unmodified	_QEINTLLEA_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1030.540771484375	1	1030.54152	1029.53424	0.93292	0.00096142	-0.40583	-0.00041823	0.52709	0.00054319	1030.5408401826553	48.689	0.20478	48.373	48.244	48.449	-0.31596					5	3	2	0	0	0	0.023938	1	18347	18347		92.491	20.569	1	4766900			25639	1193	16378	16464	24628	24628					0.02065428998139396
QEINTLLEA	9	Unmodified	_QEINTLLEA_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7744140625	2	515.774396	1029.53424	0.10604	5.4691E-05	0.073045	3.7675E-05	0.17908	9.2365E-05	515.7744806741061	48.719	0.20298	48.351	48.288	48.491	-0.36728					13	8	2	0	0	0	0.0094709	1	18058	18058		114.65	21.996	1	7044600			25640	1193	16378	16464	24629	24629					0.02065428998139396
QEIPKYITA	9	Unmodified	_QEIPKYITA_					0	0	0		ENSG00000104356|ENST00000401707|POP1;POP1|p.I399Lfs*23|2|0.09|ENSG00000104356|chr8:98136659-98136659|A/-|frameshift_variant;POP1|p.T752Lfs*12|3|0.32|ENSG00000104356|chr8:98156240-98156240|A/-|frameshift_variant	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	531.340087890625	2	531.795132	1061.57571	0.54652	0.00029064	-0.52015	-0.00027661	0.026366	1.4021E-05	532.2964144531658	36.567	0.25853	36.452	36.343	36.602	-0.11478					5	4	2	0	0	0	0.22011	1	13656	13656		21.537	10.713	1	8503700			25641	1926	16379	16465	24630	24630					0.04738609757464474
QEIQLIGVL	9	Unmodified	_QEIQLIGVL_					0	0	0			REV__nc|ENSG00000183718|Q96A61|TRIM52	REV__nc|ENSG00000183718|Q96A61|TRIM52	MSMS	HCT116MG_D190212_S2	2	506.8055725097656	2	506.8055	1011.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.493	1	57.318	56.818	57.818	-0.17494								0	0	0	0.56943	1	22200	22200		25.399	12.868	1		+		25642	17241	16380	16466	24631	24631					0.0911120013714708
QEIRHKQFIAK	11	Unmodified	_QEIRHKQFIAK_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MSMS	HCT116MG_D190212_S2	2	699.7904052734375	2	699.404235	1396.79392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42	1	41.932	41.432	42.432	-0.068199								0	0	0	0.93456	1	15886	15886		14.405	6.2499	1		+		25643	12743	16381	16467	24632	24632					0.11139219399797184
QEIRKVFRA	9	Unmodified	_QEIRKVFRA_					0	0	0		NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant;nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	382.8960876464844	3	382.896252	1145.66693	-0.026178	-1.0023E-05	-0.2104	-8.0561E-05	-0.23658	-9.0585E-05	382.8961528994367	25.269	0.26021	24.894	24.764	25.024	-0.37521					10	4	3	0	0	0	0.11498	1	9119	9119		55.235	34.654	1	26810000			25644	4001	16382	16468	24633	24633					0.09991918245464149
QEIRKVFRA	9	Unmodified	_QEIRKVFRA_					0	0	0		NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant;nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	382.8961486816406	3	382.896252	1145.66693	-0.016727	-6.4048E-06	0.13141	5.0316E-05	0.11468	4.3911E-05	382.89604991134274	24.763	0.25996	24.679	24.549	24.809	-0.083694					9	4	3	0	0	0	0.11498	1	8831	8831		55.235	38.669	1	14144000			25645	4001	16382	16468	24634	24634					0.09991918245464149
QEIRKVFRA	9	Unmodified	_QEIRKVFRA_					0	0	0		NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant;nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	NAPRT|p.G402Afs*5|1|0.35|ENSG00000147813|chr8:143575509-143575509|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	382.8959655761719	3	382.896252	1145.66693	0.21339	8.1705E-05	0.019623	7.5137E-06	0.23301	8.9219E-05	382.89614932547545	25.104	0.20804	24.824	24.694	24.902	-0.27958					6	3	2	0	0	0	0.15281	1	8892	8892		47.732	35.557	1	7515600			25646	4001	16382	16468	24635	24635					0.09991918245464149
QEISHLIEP	9	Unmodified	_QEISHLIEP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	HCT116MG_D190212_S1	1	532.77197265625	2	533.282389	1064.55022	0.096809	5.1627E-05	0.3851	0.00020537	0.48191	0.00025699	533.2825446639083	40.357	0.66915	40.357	40.073	40.742	0					15	12	2	0	0	0	0.062754	1	15132	15132		68.081	0	1	8343500			25647	3460	16383	16469	24636	24636					0.020531352350417365
QEISHLIEP	9	Unmodified	_QEISHLIEP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2825927734375	2	533.282389	1064.55022	0.59622	0.00031795	0.10742	5.7285E-05	0.70364	0.00037524	533.2824625962593	40.749	0.98962	40.448	39.851	40.84	-0.30161					54	18	5	0	0	0	0.0035147	1	15224	15224		168.66	93.73	1	42212000			25648	3460	16383	16469	24637	24637					0.020531352350417365
QEISHLIEP	9	Unmodified	_QEISHLIEP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S4	4	533.28271484375	2	533.282389	1064.55022	0.46986	0.00025057	0.20589	0.0001098	0.67575	0.00036036	533.2824382408958	40.815	0.81283	40.436	39.942	40.755	-0.37828					40	16	3	0	0	0	0.023938	1	15095	15095		92.491	20.569	1	15156000			25649	3460	16383	16469	24638	24638					0.020531352350417365
QEKAFFAQL	9	Unmodified	_QEKAFFAQL_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S1	1	541.2875366210938	2	541.287474	1080.5604	0.34775	0.00018823	0.13466	7.2889E-05	0.4824	0.00026112	541.287429958805	51.014	0.20735	51.014	50.884	51.091	0					5	3	2	0	0	0	0.0034365	1	19509	19509		160.52	89.382	1	10883000			25650	2498	16384	16470	24639	24639					0.023337429602634074
QEKAFFAQL	9	Unmodified	_QEKAFFAQL_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S2	2	541.2871704101562	2	541.287474	1080.5604	0.46798	0.00025331	0.10069	5.4501E-05	0.56867	0.00030781	541.2874019884573	51.222	0.36176	51.044	50.758	51.12	-0.17868					9	6	2	0	0	0	4.893E-05	2	19635	19618;19635		208.15	137.01	1	37136000			25651	2498	16384	16470	24640;24641	24641					0.023337429602634074
QEKAFFAQL	9	Unmodified	_QEKAFFAQL_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S3	3	541.2876586914062	2	541.287474	1080.5604	0.43746	0.00023679	-0.29957	-0.00016216	0.13788	7.4634E-05	541.2871598126993	51.405	0.31513	51.093	50.91	51.225	-0.31166					9	5	2	0	0	0	0.0080847	1	19409	19409		118.07	57.679	1	6077900			25652	2498	16384	16470	24642	24642					0.023337429602634074
QEKAKPTLLVW	11	Unmodified	_QEKAKPTLLVW_					0	0	0			REV__ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	REV__ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	657.1871337890625	2	656.884813	1311.75507	0.62626	0.00041138	-0.045498	-2.9887E-05	0.58076	0.0003815	656.8858435360593	23.201	0.52064	23.161	22.823	23.343	-0.03968					10	9	2	0	0	0	0.36272	1	8247	8247		12.241	0	1	4732800	+		25653	10013	16385	16471	24643	24643					0.11166494045414765
QEKALFAVP	9	Unmodified	_QEKALFAVP_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S1	1	501.7837829589844	2	501.784567	1001.55458	0.19928	9.9997E-05	-0.057374	-2.879E-05	0.14191	7.1208E-05	501.7843801026134	48.118	0.92826	48.118	47.789	48.717	0					38	17	3	0	0	0	0.010834	2	18239	18239;18483		111.29	52.608	1	32993000			25654	4899	16386	16472	24644;24645	24644					0.05386644448617517
QEKALFAVP	9	Unmodified	_QEKALFAVP_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S2	2	501.78424072265625	2	501.784567	1001.55458	0.66388	0.00033312	-0.28564	-0.00014333	0.37824	0.00018979	501.7842486177181	48.159	0.91415	48.026	47.738	48.653	-0.13281					44	17	4	0	0	0	0.0048275	3	18351	18351;18448;18581		139.14	70.034	1	194160000			25655	4899	16386	16472	24646;24647;24648	24646					0.05386644448617517
QEKALFAVP	9	Unmodified	_QEKALFAVP_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S3	3	501.7847595214844	2	501.784567	1001.55458	0.61718	0.00030969	-0.053328	-2.6759E-05	0.56386	0.00028293	501.78445439217484	48.341	1.1474	48.025	47.775	48.922	-0.31596					62	21	4	0	0	0	0.0048275	2	18153	18153;18383		139.14	84.365	1	113300000			25656	4899	16386	16472	24649;24650	24649					0.05386644448617517
QEKALFAVP	9	Unmodified	_QEKALFAVP_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S3	3	1002.5628051757812	1	1002.56186	1001.55458	0.68243	0.00068417	0.74454	0.00074645	1.427	0.0014306	1002.562199999761	48.309	0.26063	47.994	47.879	48.14	-0.31596					7	4	2	0	0	0	0.0062667	1	18189	18189		126.57	66.492	1	2741000			25657	4899	16386	16472	24651	24651					0.05386644448617517
QEKALFAVP	9	Unmodified	_QEKALFAVP_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S4	4	501.7846374511719	2	501.784567	1001.55458	0.24447	0.00012267	0.11825	5.9335E-05	0.36272	0.00018201	501.7844544687493	48.399	1.0843	48.031	47.78	48.864	-0.36728					58	28	3	0	0	0	0.0066233	2	17901	17901;18115		123.45	64.772	1	31480000			25658	4899	16386	16472	24652;24653	24652					0.05386644448617517
QEKDKLLAA	9	Unmodified	_QEKDKLLAA_					0	0	0		KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant;nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000554567.1_2_14:56046961-56101257:+|nuORF;KTN1|p.M404*|1|0.09|ENSG00000126777|chr14:55630084-55630085|-/AT|frameshift_variant;KTN1|p.M404Ifs*12|1|0.09|ENSG00000126777|chr14:55630085-55630086|-/ATAAACA|frameshift_variant	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	508.29290771484375	2	508.292756	1014.57096	0.43671	0.00022198	0.18325	9.3144E-05	0.61996	0.00031512	508.29261421357234	26.423	0.26031	26.423	26.293	26.553	0					9	4	3	0	0	0	0.41514	1	9560	9560		21.747	2.4897	1	12707000			25659	2947	16387	16473	24654	24654					0.06425725614712974
QEKDKLLAA	9	Unmodified	_QEKDKLLAA_					0	0	0		KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant;nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000554567.1_2_14:56046961-56101257:+|nuORF;KTN1|p.M404*|1|0.09|ENSG00000126777|chr14:55630084-55630085|-/AT|frameshift_variant;KTN1|p.M404Ifs*12|1|0.09|ENSG00000126777|chr14:55630085-55630086|-/ATAAACA|frameshift_variant	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2928771972656	2	508.292756	1014.57096	0.31093	0.00015804	-0.001832	-9.3119E-07	0.30909	0.00015711	508.2927244524848	26.829	0.52371	26.477	26.189	26.713	-0.35254					20	9	4	0	0	0	0.0096523	1	9725	9725		114.2	55.523	1	125130000			25660	2947	16387	16473	24655	24655					0.06425725614712974
QEKDKLLAA	9	Unmodified	_QEKDKLLAA_					0	0	0		KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant;nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000554567.1_2_14:56046961-56101257:+|nuORF;KTN1|p.M404*|1|0.09|ENSG00000126777|chr14:55630084-55630085|-/AT|frameshift_variant;KTN1|p.M404Ifs*12|1|0.09|ENSG00000126777|chr14:55630085-55630086|-/ATAAACA|frameshift_variant	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	508.2929992675781	2	508.292756	1014.57096	0.34348	0.00017459	0.057569	2.9262E-05	0.40105	0.00020385	508.2926764904682	26.43	0.36456	26.281	26.098	26.463	-0.14924					17	6	3	0	0	0	0.0046822	1	9465	9465		140.63	64.872	1	59965000			25661	2947	16387	16473	24656	24656					0.06425725614712974
QEKDKLLAA	9	Unmodified	_QEKDKLLAA_					0	0	0		KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant;KTN1|p.P993Lfs*6|1|0.36|ENSG00000126777|chr14:55659678-55659678|C/-|frameshift_variant;KTN1|p.K1078Nfs*12|1|0.3|ENSG00000126777|chr14:55667292-55667292|A/-|frameshift_variant;KTN1|p.A1102Gfs*15|2|0.3|ENSG00000126777|chr14:55670756-55670757|-/A|frameshift_variant;KTN1|p.K1101Rfs*18|1|0.4|ENSG00000126777|chr14:55670757-55670757|A/-|frameshift_variant;nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000554567.1_2_14:56046961-56101257:+|nuORF;KTN1|p.M404*|1|0.09|ENSG00000126777|chr14:55630084-55630085|-/AT|frameshift_variant;KTN1|p.M404Ifs*12|1|0.09|ENSG00000126777|chr14:55630085-55630086|-/ATAAACA|frameshift_variant	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	KTN1|p.H994Sfs*2|1|0.35|ENSG00000126777|chr14:55659677-55659678|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	508.29290771484375	2	508.292756	1014.57096	0.13584	6.9048E-05	0.10668	5.4225E-05	0.24252	0.00012327	508.2927955594858	26.716	0.3636	26.415	26.234	26.597	-0.30087					15	6	3	0	0	0	0.0038512	1	9535	9535		152.89	77.125	1	22327000			25662	2947	16387	16473	24657	24657					0.06425725614712974
QEKEPWMVV	9	Unmodified	_QEKEPWMVV_					0	0	0		nc|ENSG00000197782|O75290-2|ZNF780A;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A	nc|ENSG00000197782|O75290-2|ZNF780A	nc|ENSG00000197782|O75290-2|ZNF780A	MSMS	HCT116MG_D190212_S2	2	573.2871704101562	2	573.286617	1144.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.841	1	50.665	50.165	51.165	-0.17625								0	0	0	0.64498	1	19493	19493		21.747	1.293	1				25663	6176	16388	16474	24658	24658					-0.007816341199941235
QEKERRLKECM	11	Unmodified	_QEKERRLKECM_					0	0	0		ABCA3|p.Y293C|1|0.29|ENSG00000167972|chr16:2317760-2317760|T/C|missense_variant	ABCA3|p.Y293C|1|0.29|ENSG00000167972|chr16:2317760-2317760|T/C|missense_variant	ABCA3|p.Y293C|1|0.29|ENSG00000167972|chr16:2317760-2317760|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	725.3663940429688	2	725.368678	1448.7228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.553	1	56.27	55.77	56.77	-0.28367								0	0	0	0.95408	1	21472	21472		4.1895	1.4543	1				25664	3	16389	16475	24659	24659					0.016390153084557824
QEKFRHNIA	9	Unmodified	_QEKFRHNIA_					0	0	0		ENST00000589108.1_1_19:55967712-55972941:-|nuORF;nc|ENSG00000063241|Q96AB3-3|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000589108.1_1_19:55967712-55972941:-|nuORF	ENST00000589108.1_1_19:55967712-55972941:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	381.54022216796875	3	381.540357	1141.59924	-0.14714	-5.6139E-05	-0.15886	-6.0612E-05	-0.306	-0.00011675	381.5402351046747	19.821	0.20757	19.446	19.298	19.506	-0.37503					9	3	3	0	0	0	0.32155	1	6910	6910		28.495	16.32	1	21850000			25665	1129	16390	16476	24660	24660					0.03410468314677928
QEKFRHNIA	9	Unmodified	_QEKFRHNIA_					0	0	0		ENST00000589108.1_1_19:55967712-55972941:-|nuORF;nc|ENSG00000063241|Q96AB3-3|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000589108.1_1_19:55967712-55972941:-|nuORF	ENST00000589108.1_1_19:55967712-55972941:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	571.80712890625	2	571.806897	1141.59924	0.35913	0.00020535	0.21815	0.00012474	0.57727	0.00033009	571.8069028979041	19.804	0.36334	19.429	19.194	19.558	-0.37503					10	6	3	0	0	0	0.035298	1	6911	6911		89.401	64.001	1	23773000			25666	1129	16390	16476	24661	24661					0.03410468314677928
QEKIFIAA	8	Unmodified	_QEKIFIAA_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;ENST00000505692.1_1_4:122780107-122782831:-|nuORF;ENST00000502444.1_1_4:122782546-122791468:-|nuORF	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-MSMS	HCT116MG_D190212_S2	2	460.26611328125	2	460.26601	918.517468	0.28947	0.00013323	0.15542	7.1535E-05	0.44489	0.00020477	460.26597329979046	40.304	0.36294	40.231	40.102	40.465	-0.072838					11	6	3	0	0	0	0.052582	1	15208	15208		120.45	27.628	1	38281000			25667	3577	16391	16477	24662	24662					0.054949729028408
QEKIFIAA	8	Unmodified	_QEKIFIAA_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;ENST00000505692.1_1_4:122780107-122782831:-|nuORF;ENST00000502444.1_1_4:122782546-122791468:-|nuORF	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-MSMS	HCT116MG_D190212_S3	3	460.26593017578125	2	460.26601	918.517468	0.46358	0.00021337	-0.044272	-2.0377E-05	0.41931	0.00019299	460.26586512299207	40.543	0.31207	40.241	40.059	40.371	-0.30161					13	5	3	0	0	0	0.038852	1	15055	15055		136.33	31.534	1	22168000			25668	3577	16391	16477	24663	24663					0.054949729028408
QEKIFIAA	8	Unmodified	_QEKIFIAA_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;ENST00000505692.1_1_4:122780107-122782831:-|nuORF;ENST00000502444.1_1_4:122782546-122791468:-|nuORF	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-MSMS	HCT116MG_D190212_S4	4	460.2659606933594	2	460.26601	918.517468	0.13543	6.2333E-05	0.48947	0.00022529	0.6249	0.00028762	460.2660817383233	40.638	0.28766	40.26	40.13	40.418	-0.37828					9	5	2	0	0	0	0.15965	1	14942	14942		81.613	12.508	1	8909100			25669	3577	16391	16477	24664	24664					0.054949729028408
QEKKIKGRL	9	Unmodified	_QEKKIKGRL_					0	0	0			REV__ENST00000438666.6_1_13:36878560-36878611:-|nuORF	REV__ENST00000438666.6_1_13:36878560-36878611:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	550.3871459960938	2	550.35094	1098.68733	0.45806	0.0002521	0.36594	0.0002014	0.82401	0.00045349	550.8527785417608	60.598	0.35955	60.45	60.322	60.681	-0.14852					10	6	2	0	0	0	0.26961	1	23525	23525		1.8442	0	1	20056000	+		25670	15636	16392	16478	24665	24665					0.14193088905290097
QEKLVFEN	8	Unmodified	_QEKLVFEN_					0	0	0		ENSG00000157514|ENST00000372383|TSC22D3	ENSG00000157514|ENST00000372383|TSC22D3	ENSG00000157514|ENST00000372383|TSC22D3	MULTI-SECPEP	HCT116MG_D190212_S3	3	503.10797119140625	2	503.763832	1005.51311	0.46793	0.00023572	-0.38883	-0.00019588	0.079091	3.9843E-05	503.7638493714389	48.289	0.26063	47.973	47.879	48.14	-0.31596					6	4	2	0	0	0	0.28869	1	18180	18180		12.532	0	1	1833100			25671	4332	16393	16479	24666	24666					0.010574636892783928
QEKLWNVAA	9	Unmodified	_QEKLWNVAA_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	HCT116MG_D190212_S3	3	529.785888671875	2	529.785099	1057.55564	0.34846	0.00018461	-0.21218	-0.00011241	0.13628	7.22E-05	529.7849784890052	41.849	0.26212	41.546	41.415	41.677	-0.30257					8	5	2	0	0	0	0.21251	1	15573	15573		39.957	3.9131	1	11678000			25672	4050	16394	16480	24667	24667					0.029168588175025434
QEKPRTPMP	9	Unmodified	_QEKPRTPMP_					0	0	0		NDE1|p.L245Pfs*70|1|0.15|ENSG00000072864|chr16:15694188-15694189|-/C|frameshift_variant;ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1	NDE1|p.L245Pfs*70|1|0.15|ENSG00000072864|chr16:15694188-15694189|-/C|frameshift_variant	NDE1|p.L245Pfs*70|1|0.15|ENSG00000072864|chr16:15694188-15694189|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	542.7730712890625	2	542.284408	1082.55426	0.37858	0.0002053	-0.58733	-0.0003185	-0.20875	-0.0001132	542.2842633996379	22.992	0.35239	22.973	22.751	23.104	-0.018869					9	6	2	0	0	0	0.088597	1	8124	8124		60.074	14.053	1	2639900			25673	1278	16395	16481	24668	24668					0.016289014571157168
QEKSFHHVT	9	Unmodified	_QEKSFHHVT_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	HCT116MG_D190212_S2	2	556.7776489257812	2	556.777805	1111.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.539	1	16.197	15.697	16.697	-0.34183								0	0	0	0.2496	1	5572	5572		43.772	9.67	1				25674	6063;18668	16396	16482	24669	24669					-0.010252133306039468
QEKVFTSA	8	Unmodified	_QEKVFTSA_					0	0	0		nc|ENSG00000125485|Q9H8H2-4|DDX31;ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31;nc|ENSG00000125485|Q9H8H2-6|DDX31;ENST00000482620.1_1_9:135536593-135545636:-|nuORF;nc|ENSG00000125485|Q9H8H2-3|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	MULTI-MSMS	HCT116MG_D190212_S2	2	455.2374267578125	2	455.23745	908.460347	0.11167	5.0836E-05	0.19818	9.0219E-05	0.30985	0.00014105	455.2374047957607	26.985	0.31613	26.632	26.45	26.766	-0.35254					11	5	3	0	0	0	0.061818	1	9788	9788		110.67	43.331	1	42513000			25675	2889	16397	16483	24670	24670					0.0024550562648073537
QEKVFTSA	8	Unmodified	_QEKVFTSA_					0	0	0		nc|ENSG00000125485|Q9H8H2-4|DDX31;ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31;nc|ENSG00000125485|Q9H8H2-6|DDX31;ENST00000482620.1_1_9:135536593-135545636:-|nuORF;nc|ENSG00000125485|Q9H8H2-3|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	MULTI-MSMS	HCT116MG_D190212_S3	3	455.237548828125	2	455.23745	908.460347	0.34179	0.00015559	0.089043	4.0536E-05	0.43083	0.00019613	455.2373550328586	26.737	0.3642	26.588	26.411	26.775	-0.14924					17	6	4	0	0	0	0.14122	1	9608	9608		85.642	26.963	1	29502000			25676	2889	16397	16483	24671	24671					0.0024550562648073537
QEKVFTSA	8	Unmodified	_QEKVFTSA_					0	0	0		nc|ENSG00000125485|Q9H8H2-4|DDX31;ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31;nc|ENSG00000125485|Q9H8H2-6|DDX31;ENST00000482620.1_1_9:135536593-135545636:-|nuORF;nc|ENSG00000125485|Q9H8H2-3|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	MULTI-MSMS	HCT116MG_D190212_S4	4	455.2380065917969	2	455.23745	908.460347	0.26508	0.00012067	0.30575	0.00013919	0.57083	0.00025986	455.23748993281856	26.976	0.25974	26.664	26.535	26.794	-0.3114					7	4	2	0	0	0	0.3588	1	9637	9637		53.833	9.4258	1	14885000			25677	2889	16397	16483	24672	24672					0.0024550562648073537
QEKVVQVSA	9	Unmodified	_QEKVVQVSA_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1;ENST00000429051.1_1_1:28858469-28862138:+|nuORF	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-MSMS	HCT116MG_D190212_S1	1	494.2773742675781	2	494.277106	986.53966	0.30907	0.00015276	0.15443	7.6333E-05	0.4635	0.0002291	494.27707769359415	25.587	0.31313	25.587	25.405	25.718	0					7	5	2	0	0	0	0.027442	1	9220	9220		88.954	31.232	1	8683600			25678	5588	16398	16484	24673	24673					0.04585152580625618
QEKVVQVSA	9	Unmodified	_QEKVVQVSA_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1;ENST00000429051.1_1_1:28858469-28862138:+|nuORF	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2772216796875	2	494.277106	986.53966	0.4975	0.0002459	-0.1616	-7.9873E-05	0.3359	0.00016603	494.276986940932	25.948	0.31173	25.579	25.446	25.758	-0.36914					13	5	3	0	0	0	0.023778	1	9390	9390		92.653	38.821	1	38386000			25679	5588	16398	16484	24674	24674					0.04585152580625618
QEKVVQVSA	9	Unmodified	_QEKVVQVSA_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1;ENST00000429051.1_1_1:28858469-28862138:+|nuORF	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-MSMS	HCT116MG_D190212_S3	3	494.27734375	2	494.277106	986.53966	0.3571	0.00017651	0.023756	1.1742E-05	0.38085	0.00018825	494.2770319003112	25.7	0.31237	25.572	25.39	25.702	-0.12795					11	5	3	0	0	0	0.11363	1	9195	9195		55.503	13.547	1	12900000			25680	5588	16398	16484	24675	24675					0.04585152580625618
QEKYFLLQA	9	Unmodified	_QEKYFLLQA_					0	0	0		ENSG00000198088|ENST00000372466|NUP62CL	ENSG00000198088|ENST00000372466|NUP62CL	ENSG00000198088|ENST00000372466|NUP62CL	MULTI-MSMS	HCT116MG_D190212_S2	2	570.3082885742188	2	570.308406	1138.60226	0.31603	0.00018024	-0.10503	-5.9901E-05	0.211	0.00012034	570.3081981280619	50.234	0.36448	50.062	49.934	50.298	-0.1719					13	6	3	0	0	0	0.0034865	1	19257	19257		165.72	89.959	1	76792000			25681	6204	16399	16485	24676	24676					0.03850298648808348
QEKYFLLQA	9	Unmodified	_QEKYFLLQA_					0	0	0		ENSG00000198088|ENST00000372466|NUP62CL	ENSG00000198088|ENST00000372466|NUP62CL	ENSG00000198088|ENST00000372466|NUP62CL	MULTI-MSMS	HCT116MG_D190212_S3	3	570.30859375	2	570.308406	1138.60226	0.3862	0.00022026	0.21573	0.00012303	0.60193	0.00034329	570.308517611809	50.43	0.31287	50.115	49.967	50.28	-0.31477					14	5	3	0	0	0	0.0053819	1	19031	19031		134.3	69.061	1	25306000			25682	6204	16399	16485	24677	24677					0.03850298648808348
QEKYFLLQA	9	Unmodified	_QEKYFLLQA_					0	0	0		ENSG00000198088|ENST00000372466|NUP62CL	ENSG00000198088|ENST00000372466|NUP62CL	ENSG00000198088|ENST00000372466|NUP62CL	MULTI-MSMS	HCT116MG_D190212_S4	4	570.3087158203125	2	570.308406	1138.60226	0.50053	0.00028546	0.11746	6.6987E-05	0.61799	0.00035245	570.3082752456622	50.49	0.20763	50.131	50.001	50.209	-0.35878					9	3	3	0	0	0	0.0053819	1	18773	18773		134.3	71.723	1	11124000			25683	6204	16399	16485	24678	24678					0.03850298648808348
QELEATLY	8	Unmodified	_QELEATLY_					0	0	0		nc|ENSG00000176049|Q96AA8-4|JAKMIP2;nc|ENSG00000176049|Q96AA8-2|JAKMIP2;nc|ENSG00000176049|Q96AA8|JAKMIP2;ENSG00000176049|ENST00000616793|JAKMIP2	nc|ENSG00000176049|Q96AA8-4|JAKMIP2	nc|ENSG00000176049|Q96AA8-4|JAKMIP2	MULTI-MSMS	HCT116MG_D190212_S3	3	966.478515625	1	966.477854	965.470577	0.41998	0.00040591	0.29202	0.00028223	0.712	0.00068813	966.4779786615504	36.524	0.52022	36.223	36.041	36.561	-0.30113					26	9	4	0	0	0	0.064348	1	13486	13486		108	4.2488	1	89769000			25684	5402	16400	16486	24679	24679					-0.013539314389504398
QELEATLY	8	Unmodified	_QELEATLY_					0	0	0		nc|ENSG00000176049|Q96AA8-4|JAKMIP2;nc|ENSG00000176049|Q96AA8-2|JAKMIP2;nc|ENSG00000176049|Q96AA8|JAKMIP2;ENSG00000176049|ENST00000616793|JAKMIP2	nc|ENSG00000176049|Q96AA8-4|JAKMIP2	nc|ENSG00000176049|Q96AA8-4|JAKMIP2	MULTI-MSMS	HCT116MG_D190212_S3	3	483.7428283691406	2	483.742565	965.470577	0.0062066	3.0024E-06	0.042881	2.0743E-05	0.049087	2.3746E-05	483.7423669513863	36.524	0.52022	36.223	36.041	36.561	-0.30113					11	9	2	0	0	0	0.12693	1	13513	13513		88.904	3.6316	1	6737700			25685	5402	16400	16486	24680	24680					-0.013539314389504398
QELEATLY	8	Unmodified	_QELEATLY_					0	0	0		nc|ENSG00000176049|Q96AA8-4|JAKMIP2;nc|ENSG00000176049|Q96AA8-2|JAKMIP2;nc|ENSG00000176049|Q96AA8|JAKMIP2;ENSG00000176049|ENST00000616793|JAKMIP2	nc|ENSG00000176049|Q96AA8-4|JAKMIP2	nc|ENSG00000176049|Q96AA8-4|JAKMIP2	MULTI-MSMS	HCT116MG_D190212_S4	4	966.4785766601562	1	966.477854	965.470577	0.63481	0.00061353	0.047442	4.5852E-05	0.68225	0.00065938	966.4777552501457	36.608	0.46445	36.224	36.023	36.487	-0.38486					21	8	4	0	0	0	0.094591	1	13396	13396		96.285	0.17383	1	27551000			25686	5402	16400	16486	24681	24681					-0.013539314389504398
QELGGLHSA	9	Unmodified	_QELGGLHSA_					0	0	0		INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant;ENST00000583822.5_1_17:59949574-59962361:-|nuORF;INTS2|p.T812Sfs*11|1|0.15|ENSG00000108506|chr17:61877931-61877934|TGTT/-|frameshift_variant;INTS2|p.F1100Lfs*26|2|0.29|ENSG00000108506|chr17:61867978-61867978|A/-|frameshift_variant;ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant	INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	456.2328796386719	2	456.232699	910.450845	0.15937	7.271E-05	0.035968	1.641E-05	0.19534	8.9119E-05	456.2326416179704	27.714	0.20613	27.372	27.243	27.449	-0.34201					5	3	2	0	0	0	0.39784	1	10109	10109		22.736	0	1	20583000			25687	2163	16401	16487	24682	24682					-0.007962626590483524
QELGGLHSA	9	Unmodified	_QELGGLHSA_					0	0	0		INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant;ENST00000583822.5_1_17:59949574-59962361:-|nuORF;INTS2|p.T812Sfs*11|1|0.15|ENSG00000108506|chr17:61877931-61877934|TGTT/-|frameshift_variant;INTS2|p.F1100Lfs*26|2|0.29|ENSG00000108506|chr17:61867978-61867978|A/-|frameshift_variant;ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant	INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	456.23291015625	2	456.232699	910.450845	0.4547	0.00020745	-0.45815	-0.00020903	-0.003452	-1.5749E-06	456.2324694334834	27.575	0.26011	27.387	27.205	27.465	-0.18847					7	4	2	0	0	0	0.0053819	1	9949	9949		134.3	59.367	1	15283000			25688	2163	16401	16487	24683	24683					-0.007962626590483524
QELGGLHSA	9	Unmodified	_QELGGLHSA_					0	0	0		INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant;ENST00000583822.5_1_17:59949574-59962361:-|nuORF;INTS2|p.T812Sfs*11|1|0.15|ENSG00000108506|chr17:61877931-61877934|TGTT/-|frameshift_variant;INTS2|p.F1100Lfs*26|2|0.29|ENSG00000108506|chr17:61867978-61867978|A/-|frameshift_variant;ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant	INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	456.2326354980469	2	456.232699	910.450845	0.2524	0.00011515	-0.17717	-8.0832E-05	0.07523	3.4323E-05	456.2326522126874	27.797	0.30204	27.476	27.252	27.554	-0.32157					8	5	2	0	0	0	0.020181	1	9972	9972		96.285	34.927	1	7307700			25689	2163	16401	16487	24684	24684					-0.007962626590483524
QELGGLHSA	9	Unmodified	_QELGGLHSA_					0	0	0		INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant;ENST00000583822.5_1_17:59949574-59962361:-|nuORF;INTS2|p.T812Sfs*11|1|0.15|ENSG00000108506|chr17:61877931-61877934|TGTT/-|frameshift_variant;INTS2|p.F1100Lfs*26|2|0.29|ENSG00000108506|chr17:61867978-61867978|A/-|frameshift_variant;ENSG00000108506|ENST00000251334|INTS2;nc|ENSG00000108506|Q9H0H0|INTS2	INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant	INTS2|p.L703S|1|0.26|ENSG00000108506|chr17:61884906-61884906|A/G|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	456.232699	910.450845	0.15937	7.271E-05	0.035968	1.641E-05	0.19534	8.9119E-05	456.2326416179704	27.714	0.20613	27.372	27.243	27.449	-0.34201	-0.039319	0.00032998	NaN	134.3	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20583000			25690	2163	16401	16487							-0.007962626590483524
QELGHSQSA	9	Unmodified	_QELGHSQSA_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MSMS	HCT116MG_D190212_S2	2	478.72491455078125	2	478.725238	955.435923	0.24106	0.0001154	0.0030462	1.4583E-06	0.24411	0.00011686	478.72513822558636	16.988	0.41628	16.639	16.509	16.925	-0.34933					11	7	3	0	0	0	0.0040527	1	5767	5767		149.91	92.443	1	16282000			25691	3482	16402	16488	24685	24685					-0.043577545270409246
QELGHSQSA	9	Unmodified	_QELGHSQSA_					0	0	0		nc|ENSG00000137497|Q14980-4|NUMA1;NUMA1|p.K1766Rfs*2|1|0.39|ENSG00000137497|chr11:72007357-72007357|G/-|frameshift_variant;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.L1786Pfs*18|1|0.23|ENSG00000137497|chr11:72007295-72007296|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	478.725238	955.435923	0.1717	8.2196E-05	0.54054	0.00025877	0.71224	0.00034097	478.7251442908703	16.655	0.20818	16.655	16.525	16.733	0	0.0082722	0.00046216	NaN	149.91	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1603400			25692	3482	16402	16488							-0.043577545270409246
QELGQKEPQ	9	Unmodified	_QELGQKEPQ_					0	0	0			REV__ENST00000535402.1_1_12:661267-661702:+|nuORF	REV__ENST00000535402.1_1_12:661267-661702:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2625732421875	2	528.769645	1055.52474	0.41476	0.00021931	-0.29385	-0.00015538	0.12091	6.3934E-05	528.7695517539369	18.767	0.26028	18.836	18.667	18.927	0.069159					6	4	2	0	0	0	0.49616	1	6347	6347		17.113	1.2657	1	2861700	+		25693	12246	16403	16489	24686	24686					-0.0008033928738768736
QELHFIEKA	9	Unmodified	_QELHFIEKA_					0	0	0		ENST00000491221.1_1_19:19762333-19764718:-|nuORF;ENST00000469641.5_1_19:19762333-19763700:-|nuORF;ENST00000473243.5_1_19:19762333-19765368:-|nuORF;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	MSMS	HCT116MG_D190212_S1	1	557.797607421875	2	557.798206	1113.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.337	1	34.337	33.837	34.837	0								0	0	0	0.00010353	1	12737	12737		135.86	59.039	1				25694	2031	16404	16490	24687	24687					0.029611279890104925
QELHFIEKA	9	Unmodified	_QELHFIEKA_					0	0	0		ENST00000491221.1_1_19:19762333-19764718:-|nuORF;ENST00000469641.5_1_19:19762333-19763700:-|nuORF;ENST00000473243.5_1_19:19762333-19765368:-|nuORF;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7984619140625	2	557.798206	1113.58186	0.57537	0.00032094	-0.029137	-1.6253E-05	0.54624	0.00030469	557.7981659540085	34.424	0.20738	34.249	34.124	34.331	-0.17511					8	3	3	0	0	0	5.5922E-11	1	12810	12810		244.98	115.21	1	49953000			25695	2031	16404	16490	24688	24688					0.029611279890104925
QELHFIEKA	9	Unmodified	_QELHFIEKA_					0	0	0		ENST00000491221.1_1_19:19762333-19764718:-|nuORF;ENST00000469641.5_1_19:19762333-19763700:-|nuORF;ENST00000473243.5_1_19:19762333-19765368:-|nuORF;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	372.2010498046875	3	372.201229	1113.58186	-0.0022194	-8.2607E-07	-0.076032	-2.8299E-05	-0.078251	-2.9125E-05	372.20116447160774	34.429	0.25923	34.253	34.072	34.331	-0.17512					10	4	3	0	0	0	0.16285	1	12814	12814		42.835	17.954	1	27522000			25696	2031	16404	16490	24689	24689					0.029611279890104925
QELHFIEKA	9	Unmodified	_QELHFIEKA_					0	0	0		ENST00000491221.1_1_19:19762333-19764718:-|nuORF;ENST00000469641.5_1_19:19762333-19763700:-|nuORF;ENST00000473243.5_1_19:19762333-19765368:-|nuORF;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	557.7982177734375	2	557.798206	1113.58186	0.22682	0.00012652	0.23798	0.00013274	0.4648	0.00025926	557.798156182375	34.607	0.25938	34.31	34.181	34.44	-0.29707					10	4	3	0	0	0	0.0040049	1	12746	12746		150.62	67.19	1	20895000			25697	2031	16404	16490	24690	24690					0.029611279890104925
QELHFIEKA	9	Unmodified	_QELHFIEKA_					0	0	0		ENST00000491221.1_1_19:19762333-19764718:-|nuORF;ENST00000469641.5_1_19:19762333-19763700:-|nuORF;ENST00000473243.5_1_19:19762333-19765368:-|nuORF;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	ENST00000491221.1_1_19:19762333-19764718:-|nuORF	MSMS	HCT116MG_D190212_S4	4	557.7979736328125	2	557.798206	1113.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.775	1	34.389	33.889	34.889	-0.38606								0	0	0	0.0058944	1	12711	12711		114.5	35.769	1				25698	2031	16404	16490	24691	24691					0.029611279890104925
QELIGSHVR	9	Unmodified	_QELIGSHVR_					0	0	0			REV__FIBP|p.R38H|1|0.5|ENSG00000172500|chr11:65888105-65888105|C/T|missense_variant	REV__FIBP|p.R38H|1|0.5|ENSG00000172500|chr11:65888105-65888105|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	519.7890014648438	2	519.788173	1037.56179	0.29415	0.0001529	0.72865	0.00037874	1.0228	0.00053164	519.788591007119	23.461	0.31263	23.422	23.291	23.604	-0.03968					7	5	2	0	0	0	0.45867	1	8314	8314		19.257	0	1	2538100	+		25699	16823	16405	16491	24692	24692					0.04451377049053917
QELKEKELKV	10	Unmodified	_QELKEKELKV_					0	0	0			REV__ENST00000413175.2_1_1:155403304-155403850:+|nuORF	REV__ENST00000413175.2_1_1:155403304-155403850:+|nuORF	MSMS	HCT116MG_D190212_S1	1	622.3639526367188	2	622.366453	1242.71835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.4	1	39.4	38.9	39.9	0								0	0	0	0.92917	1	14779	14779		9.3831	1.2276	1		+		25700	10188	16406	16492	24693	24693					0.10670197428817119
QELLAKRMKL	10	Unmodified	_QELLAKRMKL_					0	0	0		CON__Q0VCM5	CON__Q0VCM5	CON__Q0VCM5	MSMS	HCT116MG_D190212_S2	2	615.3712768554688	2	615.373558	1228.73256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.062	1	43.984	43.484	44.484	-0.078373								0	0	0	0.5764	1	16725	16725		43.858	16.229	1			+	25701	568	16407	16493	24694	24694					0.12734571376154236
QELLSPQEPP	10	Unmodified	_QELLSPQEPP_					0	0	0		ENST00000528842.1_1_8:145537548-145537767:+|nuORF;ENST00000527328.5_1_8:145537548-145537990:+|nuORF;ENST00000532338.5_1_8:145534845-145537990:+|nuORF;nc|ENSG00000185122|Q00613-2|HSF1;ENSG00000185122|ENST00000528838|HSF1	ENST00000528842.1_1_8:145537548-145537767:+|nuORF	ENST00000528842.1_1_8:145537548-145537767:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	569.7780151367188	2	569.292953	1136.57135	0.40751	0.00023199	-0.6214	-0.00035376	-0.21389	-0.00012177	569.2925606337881	26.423	0.31251	26.423	26.24	26.553	0					8	5	2	0	0	0	0.30856	1	9487	9487		6.7232	6.7232	1	11068000			25702	5806	16408	16494	24695	24695					0.008531005438953798
QELLSPQEPP	10	Unmodified	_QELLSPQEPP_					0	0	0		ENST00000528842.1_1_8:145537548-145537767:+|nuORF;ENST00000527328.5_1_8:145537548-145537990:+|nuORF;ENST00000532338.5_1_8:145534845-145537990:+|nuORF;nc|ENSG00000185122|Q00613-2|HSF1;ENSG00000185122|ENST00000528838|HSF1	ENST00000528842.1_1_8:145537548-145537767:+|nuORF	ENST00000528842.1_1_8:145537548-145537767:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	569.292953	1136.57135	0.35087	0.00019975	-0.25177	-0.00014333	0.099101	5.6417E-05	569.2929406080873	26.836	0.26126	26.484	26.345	26.606	-0.35254	0.030464	0.00029281	NaN	3.5965	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15873000			25703	5806	16408	16494							0.008531005438953798
QELMIQQL	8	Unmodified	_QELMIQQL_					0	0	0		nc|ENSG00000131408|P55055-2|NR1H2;ENSG00000131408|ENST00000253727|NR1H2	nc|ENSG00000131408|P55055-2|NR1H2	nc|ENSG00000131408|P55055-2|NR1H2	MSMS	HCT116MG_D190212_S1	1	501.78131103515625	2	501.76806	1001.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.435	1	32.435	31.935	32.935	0								0	0	0	0.65638	1	11969	11969		34.102	7.2188	1				25704	3139	16409	16495	24696	24696					0.020866943342639388
QELNRRPKKL	10	Unmodified	_QELNRRPKKL_					0	0	0			REV__ENSG00000162783|ENST00000367577|IER5	REV__ENSG00000162783|ENST00000367577|IER5	MULTI-MSMS	HCT116MG_D190212_S4	4	641.3908081054688	2	641.391128	1280.7677	0.5905	0.00037874	-0.30964	-0.0001986	0.28086	0.00018014	641.3903838195074	55.426	0.41672	55.108	54.928	55.344	-0.31775					15	7	3	0	0	0	0.88886	1	20759	20759		1.3295	0.13619	1	3980200	+		25705	12897	16410	16496	24697	24697					0.13854950228301277
QELPRLLSA	9	Unmodified	_QELPRLLSA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S1	1	513.8013305664062	2	513.800749	1025.58694	0.41744	0.00021448	0.12657	6.5033E-05	0.54401	0.00027951	513.8008899118325	45.46	0.31147	45.46	45.244	45.555	0					8	5	2	0	0	0	0.00446	1	17225	17225		143.91	33.234	1	9548300			25706	5087	16411	16497	24698	24698					0.07517431851624679
QELPRLLSA	9	Unmodified	_QELPRLLSA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S2	2	513.8008422851562	2	513.800749	1025.58694	0.18152	9.3266E-05	0.091836	4.7185E-05	0.27336	0.00014045	513.80066258485	45.472	0.46365	45.38	45.101	45.565	-0.092476					19	8	3	0	0	0	0.0015154	1	17270	17270		189.73	34.705	1	80609000			25707	5087	16411	16497	24699	24699					0.07517431851624679
QELPRLLSA	9	Unmodified	_QELPRLLSA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S3	3	513.8009033203125	2	513.800749	1025.58694	0.31197	0.00016029	0.017242	8.8588E-06	0.32921	0.00016915	513.8006723727584	45.746	0.51983	45.435	45.148	45.668	-0.31094					22	9	3	0	0	0	0.0015154	1	17080	17080		189.73	47.652	1	33525000			25708	5087	16411	16497	24700	24700					0.07517431851624679
QELPRLLSA	9	Unmodified	_QELPRLLSA_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S4	4	513.8012084960938	2	513.800749	1025.58694	0.29792	0.00015307	0.049573	2.5471E-05	0.34749	0.00017854	513.800745392807	45.783	0.3575	45.411	45.196	45.553	-0.37206					14	6	3	0	0	0	0.0035894	1	16894	16894		176.43	46.655	1	16944000			25709	5087	16411	16497	24701	24701					0.07517431851624679
QELPSHGV	8	Unmodified	_QELPSHGV_					0	0	0		ENST00000422342.2_1_12:121746285-121747708:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5	ENST00000422342.2_1_12:121746285-121747708:-|nuORF	ENST00000422342.2_1_12:121746285-121747708:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	433.721923828125	2	433.721967	865.429381	-0.070665	-3.0649E-05	0.11554	5.0114E-05	0.044878	1.9465E-05	433.7219939480118	25.431	0.20816	25.431	25.301	25.509	0					5	3	2	0	0	0	0.3916	1	9176	9176		50.855	8.7605	1	5196600			25710	1510	16412	16498	24702	24702					-0.008716476877566492
QELPSHGV	8	Unmodified	_QELPSHGV_					0	0	0		ENST00000422342.2_1_12:121746285-121747708:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5	ENST00000422342.2_1_12:121746285-121747708:-|nuORF	ENST00000422342.2_1_12:121746285-121747708:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	433.7222900390625	2	433.721967	865.429381	0.06622	2.8721E-05	0.44151	0.00019149	0.50774	0.00022022	433.7219093128789	25.842	0.36294	25.473	25.291	25.654	-0.36914					8	6	2	0	0	0	0.055277	1	9334	9334		117.6	24.777	1	20414000			25711	1510	16412	16498	24703	24703					-0.008716476877566492
QELPSHGV	8	Unmodified	_QELPSHGV_					0	0	0		ENST00000422342.2_1_12:121746285-121747708:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5	ENST00000422342.2_1_12:121746285-121747708:-|nuORF	ENST00000422342.2_1_12:121746285-121747708:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	433.7220458984375	2	433.721967	865.429381	0.26398	0.00011449	-0.045609	-1.9782E-05	0.21837	9.4711E-05	433.7218772573381	25.582	0.36398	25.46	25.24	25.604	-0.12229					9	6	2	0	0	0	0.3916	1	9165	9165		50.855	8.7605	1	3254600			25712	1510	16412	16498	24704	24704					-0.008716476877566492
QELPTIRTP	9	Unmodified	_QELPTIRTP_					0	0	0		nc|ENSG00000105176|O94763-4|URI1;nc|ENSG00000105176|O94763-3|URI1;ENSG00000105176|ENST00000392271|URI1;nc|ENSG00000105176|O94763-2|URI1	nc|ENSG00000105176|O94763-4|URI1	nc|ENSG00000105176|O94763-4|URI1	MSMS	HCT116MG_D190212_S2	2	527.7984619140625	2	527.798206	1053.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.525	1	38.44	37.94	38.94	-0.084618								0	0	0	0.050056	1	14473	14473		70.332	22.583	1				25713	1985	16413	16499	24705	24705					0.05721127988999797
QELPTIRTP	9	Unmodified	_QELPTIRTP_					0	0	0		nc|ENSG00000105176|O94763-4|URI1;nc|ENSG00000105176|O94763-3|URI1;ENSG00000105176|ENST00000392271|URI1;nc|ENSG00000105176|O94763-2|URI1	nc|ENSG00000105176|O94763-4|URI1	nc|ENSG00000105176|O94763-4|URI1	MULTI-MSMS	HCT116MG_D190212_S3	3	527.7987060546875	2	527.798206	1053.58186	0.31274	0.00016506	0.012042	6.3556E-06	0.32478	0.00017142	527.7981077667699	38.524	0.57137	38.222	37.937	38.508	-0.30137					19	10	2	0	0	0	0.012531	1	14261	14261		107.1	41.865	1	7208900			25714	1985	16413	16499	24706	24706					0.05721127988999797
QELPTIRTP	9	Unmodified	_QELPTIRTP_					0	0	0		nc|ENSG00000105176|O94763-4|URI1;nc|ENSG00000105176|O94763-3|URI1;ENSG00000105176|ENST00000392271|URI1;nc|ENSG00000105176|O94763-2|URI1	nc|ENSG00000105176|O94763-4|URI1	nc|ENSG00000105176|O94763-4|URI1	MSMS	HCT116MG_D190212_S4	4	527.7982788085938	2	527.798206	1053.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.77	1	38.388	37.888	38.888	-0.38163								0	0	0	0.018972	1	14221	14221		93.166	33.092	1				25715	1985	16413	16499	24707	24707					0.05721127988999797
QELQEINRVY	10	Unmodified	_QELQEINRVY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S1	1	646.3366088867188	2	646.335684	1290.65681	0.78362	0.00050648	-0.75473	-0.00048781	0.028894	1.8675E-05	646.3355116822482	37.12	0.20744	37.12	36.99	37.197	0					7	3	3	0	0	0	0.0087358	1	13889	13889		155.95	71.432	1	11393000			25716	5683	16414	16500	24708	24708					0.023112657295769168
QELQEINRVY	10	Unmodified	_QELQEINRVY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S2	2	646.3367919921875	2	646.335684	1290.65681	0.56002	0.00036196	0.29302	0.00018939	0.85304	0.00055135	646.3359340732848	37.155	0.25697	37.052	36.923	37.18	-0.10318					8	4	2	0	0	0	6.7757E-11	1	13929	13929		226.55	126.46	1	56663000			25717	5683	16414	16500	24709	24709					0.023112657295769168
QELQEINRVY	10	Unmodified	_QELQEINRVY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;NPTN-ANXA2|1|fusion;nc|ENSG00000231991|A6NMY6|ANXA2P2	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	HCT116MG_D190212_S3	3	646.3367309570312	2	646.335684	1290.65681	0.66221	0.00042801	-0.058543	-3.7838E-05	0.60366	0.00039017	646.3354955853252	37.357	0.20814	37.055	36.925	37.133	-0.30137					8	3	3	0	0	0	6.7757E-11	1	13847	13847		226.55	116	1	10358000			25718	5683	16414	16500	24710	24710					0.023112657295769168
QELQGIRQA	9	Unmodified	_QELQGIRQA_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MSMS	HCT116MG_D190212_S3	3	521.7857055664062	2	521.78563	1041.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.975	1	26.805	26.305	27.305	-0.16933								0	0	0	0.44802	1	9701	9701		31.268	1.4278	1				25719	5348	16415	16501	24711	24711					0.037590731864384
QELQVETY	8	Unmodified	_QELQVETY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S2	2	1009.48486328125	1	1009.48367	1008.47639	0.47594	0.00048045	-0.047048	-4.7495E-05	0.42889	0.00043296	1009.4839756296348	37.309	0.30928	37.206	37.026	37.335	-0.10318					11	5	3	0	0	0	0.014149	1	13985	13985		158.2	57.831	1	39802000			25720	6126	16416	16502	24712	24712					-0.027508329272791343
QELQVETY	8	Unmodified	_QELQVETY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S3	3	505.2452087402344	2	505.245472	1008.47639	0.39965	0.00020192	-0.10995	-5.5554E-05	0.2897	0.00014637	505.24518380408387	37.482	0.20781	37.181	37.029	37.237	-0.30137					8	3	3	0	0	0	0.057078	2	13885	13846;13885		115.69	47.611	1	13237000			25721	6126	16416	16502	24713;24714	24714					-0.027508329272791343
QELQVETY	8	Unmodified	_QELQVETY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S3	3	1009.4825439453125	1	1009.48367	1008.47639	0.68288	0.00068936	0.12008	0.00012122	0.80297	0.00081058	1009.4835927102346	37.461	0.35531	37.159	36.925	37.28	-0.30137					12	6	3	0	0	0	0.014149	1	13870	13870		158.2	57.831	1	30376000			25722	6126	16416	16502	24715	24715					-0.027508329272791343
QELQVETY	8	Unmodified	_QELQVETY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S4	4	1009.4837646484375	1	1009.48367	1008.47639	0.47787	0.00048241	0.75381	0.00076096	1.2317	0.0012434	1009.4840456051357	37.525	0.20617	37.141	36.977	37.183	-0.3839					5	3	2	0	0	0	0.045718	1	13785	13785		128.37	39.462	1	6845000			25723	6126	16416	16502	24716	24716					-0.027508329272791343
QELQVETY	8	Unmodified	_QELQVETY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S4	4	505.24554443359375	2	505.245472	1008.47639	0.10769	5.441E-05	-0.40696	-0.00020561	-0.29927	-0.0001512	505.24533611107034	37.513	0.18816	37.129	37.028	37.216	-0.3839					5	3	2	0	0	0	0.34844	1	13791	13791		54.774	24.137	1	3374800			25724	6126	16416	16502	24717	24717					-0.027508329272791343
QELQVETY	8	Unmodified	_QELQVETY_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MATCH	HCT116MG_D190212_S2	2		2	505.245472	1008.47639	0.30793	0.00015558	-0.27576	-0.00013933	0.032173	1.6255E-05	505.2453349632296	37.291	0.20639	37.188	37.078	37.284	-0.10318	0.022045	4.7391E-06	NaN	115.69	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9701200			25725	6126	16416	16502							-0.027508329272791343
QELRYEQERRP	11	Unmodified	_QELRYEQERRP_					0	0	0		nc|ENSG00000160633|Q15424-2|SAFB;SAFB|p.G800Afs*8|1|0.41|ENSG00000160633|chr19:5667104-5667104|G/-|frameshift_variant;SAFB|p.D823Tfs*19|1|0.2|ENSG00000160633|chr19:5667361-5667361|G/-|frameshift_variant;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	MSMS	HCT116MG_D190212_S4	4	752.3849487304688	2	752.386771	1502.75899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.877	1	46.505	46.005	47.005	-0.37134								0	0	0	0.94145	1	17321	17321		10.8	0	1				25726	9516	16417	16503	24718	24718					0.027719318011577343
QELSNEENC	9	Unmodified	_QELSNEENC_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	HCT116MG_D190212_S4	4	533.21044921875	2	533.211303	1064.40805	0.47035	0.00025079	-0.65931	-0.00035155	-0.18896	-0.00010076	533.7126108151188	40.76	0.28765	40.382	40.286	40.573	-0.37828					7	5	2	0	0	0	0.21251	1	15027	15027		39.957	18.211	1	2026300			25727	3749	16418	16504	24719	24719					-0.12157445569459924
QELSNEENC	9	Unmodified	_QELSNEENC_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MATCH	HCT116MG_D190212_S2	2		2	533.211303	1064.40805	0.61817	0.00032962	-0.82358	-0.00043914	-0.2054	-0.00010952	533.7121986985597	40.434	0.25868	40.364	40.261	40.519	-0.069626	-0.0088014	-3.2097E-05	NaN	39.957	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6872500			25728	3749	16418	16504							-0.12157445569459924
QELVRQPLLR	10	Unmodified	_QELVRQPLLR_					0	0	0			REV__nc|ENSG00000137710|P35241-3|RDX	REV__nc|ENSG00000137710|P35241-3|RDX	MULTI-MSMS	HCT116MG_D190212_S2	2	626.3801879882812	2	626.380229	1250.7459	0.57532	0.00036037	-0.7295	-0.00045694	-0.15417	-9.657E-05	626.3796953745598	55.779	0.46416	55.593	55.38	55.844	-0.18565					14	8	2	0	0	0	0.8806	1	21534	21534		6.2058	0	1	24506000	+		25729	12185	16419	16505	24720	24720					0.1305614547973164
QELWSVFF	8	Unmodified	_QELWSVFF_					0	0	0			REV__ENST00000310653.10_2_11:73471710-73471875:-|nuORF	REV__ENST00000310653.10_2_11:73471710-73471875:-|nuORF	MSMS	HCT116MG_D190212_S1	1	528.2628173828125	2	528.263468	1054.51238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.119	1	38.119	37.619	38.619	0								0	0	0	0.85589	1	14262	14262		18.135	0	1		+		25730	14829	16420	16506	24721	24721					-0.012693309597580082
QELWSVFF	8	Unmodified	_QELWSVFF_					0	0	0			REV__ENST00000310653.10_2_11:73471710-73471875:-|nuORF	REV__ENST00000310653.10_2_11:73471710-73471875:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.8480224609375	2	528.263468	1054.51238	0.36344	0.00019199	-0.1619	-8.5525E-05	0.20154	0.00010647	528.263398193233	23.294	0.57123	22.908	22.622	23.193	-0.3852					16	10	2	0	0	0	0.28869	1	8366	8366		24.674	1.5255	1	108290000	+		25731	14829	16420	16506	24722	24722					-0.012693309597580082
QEMEKHHVP	9	Unmodified	_QEMEKHHVP_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S2	2	567.772216796875	2	567.771665	1133.52878	0.38973	0.00022128	0.14542	8.2564E-05	0.53515	0.00030384	567.7717671265254	17.301	1.3582	16.951	16.821	18.179	-0.34933					47	25	2	0	0	0	0.031089	2	5901	5901;6142		85.272	39.572	1	28978000		+	25732	585	16421	16507	24723;24724	24723					-0.032645730653030114
QEMEKHHVP	9	Unmodified	_QEMEKHHVP_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MSMS	HCT116MG_D190212_S3	3	567.7715454101562	2	567.771665	1133.52878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.714	1	15.8	15.3	16.3	0.085423								0	0	0	0.0001	1	5162	5162		136.33	74.976	1			+	25733	585	16421	16507	24725	24725					-0.032645730653030114
QEMEQQLA	8	Unmodified	_QEMEQQLA_					0	0	0		ENSG00000144524|ENST00000350033|COPS7B;ENST00000410017.5_1_2:232665914-232672352:+|nuORF;nc|ENSG00000144524|Q9H9Q2-2|COPS7B	ENSG00000144524|ENST00000350033|COPS7B	ENSG00000144524|ENST00000350033|COPS7B	MULTI-MSMS	HCT116MG_D190212_S2	2	976.4419555664062	1	976.440422	975.433146	0.7838	0.00076534	-0.031771	-3.1023E-05	0.75203	0.00073431	976.4405048363774	35.676	0.25699	35.534	35.386	35.643	-0.14245					7	4	2	0	0	0	0.21275	1	13342	13342		71.134	9.7761	1	15055000			25734	3865	16422	16508	24726	24726					-0.055553459762109014
QEMEQQLA	8	Unmodified	_QEMEQQLA_					0	0	0		ENSG00000144524|ENST00000350033|COPS7B;ENST00000410017.5_1_2:232665914-232672352:+|nuORF;nc|ENSG00000144524|Q9H9Q2-2|COPS7B	ENSG00000144524|ENST00000350033|COPS7B	ENSG00000144524|ENST00000350033|COPS7B	MULTI-MSMS	HCT116MG_D190212_S3	3	976.4407348632812	1	976.440422	975.433146	0.687	0.00067081	-0.25498	-0.00024898	0.43202	0.00042184	976.440012803643	35.817	0.25787	35.517	35.42	35.678	-0.30042					8	5	2	0	0	0	0.21275	1	13232	13232		71.134	9.7761	1	9176900			25735	3865	16422	16508	24727	24727					-0.055553459762109014
QEMNRLFGA	9	Unmodified	_QEMNRLFGA_					0	0	0		ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2610473632812	2	533.260933	1064.50731	0.54316	0.00028965	-0.038253	-2.0399E-05	0.50491	0.00026925	533.2608593333318	42.63	0.26048	42.327	42.196	42.457	-0.30352					7	4	2	0	0	0	0.0050238	1	15908	15908		137.42	77.35	1	7098800			25736	4670	16423	16509	24728	24728					-0.022359580940246815
QEMNRLFGA	9	Unmodified	_QEMNRLFGA_					0	0	0		ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MULTI-MSMS	HCT116MG_D190212_S4	4	533.2608642578125	2	533.260933	1064.50731	0.44099	0.00023516	-0.014192	-7.5681E-06	0.4268	0.0002276	533.2608444211219	42.707	0.20234	42.332	42.202	42.405	-0.37493					6	3	2	0	0	0	0.097615	1	15734	15734		58.679	18.729	1	2623700			25737	4670	16423	16509	24729	24729					-0.022359580940246815
QEMPVQFQV	9	Unmodified	_QEMPVQFQV_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MSMS	HCT116MG_D190212_S2	2	553.271484375	2	553.270967	1104.52738	0.3208	0.00017749	0.062279	3.4457E-05	0.38308	0.00021194	553.2710333235149	50.996	0.36217	50.818	50.604	50.966	-0.17868					16	6	3	0	0	0	5.2262E-08	1	19546	19546		223.06	159.5	1	58399000			25738	1369	16424	16510	24730	24730					-0.020702071540654288
QEMPVQFQV	9	Unmodified	_QEMPVQFQV_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2711181640625	2	553.270967	1104.52738	0.38131	0.00021097	0.090985	5.0339E-05	0.4723	0.00026131	553.2709224384129	51.176	0.41929	50.864	50.7	51.12	-0.31166					11	7	2	0	0	0	5.7085E-05	1	19327	19327		206.75	152.92	1	10170000			25739	1369	16424	16510	24731	24731					-0.020702071540654288
QEMPVQFQV	9	Unmodified	_QEMPVQFQV_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MSMS	HCT116MG_D190212_S4	4	553.270263671875	2	553.270967	1104.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.25	1	50.899	50.399	51.399	-0.35028								0	0	0	0.16454	1	19068	19068		49.933	35.095	1				25740	1369	16424	16510	24732	24732					-0.020702071540654288
QEMPVQFQV	9	Unmodified	_QEMPVQFQV_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MULTI-MATCH	HCT116MG_D190212_S4	4		2	553.270967	1104.52738	0.42347	0.00023429	-0.47156	-0.0002609	-0.048091	-2.6607E-05	553.2702575488598	51.162	0.20839	50.807	50.677	50.885	-0.35483	-0.022663	-0.00059239	NaN	223.06	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2723300			25741	1369	16424	16510							-0.020702071540654288
QEMTHMVNA	9	Unmodified	_QEMTHMVNA_					0	0	0		PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant;PTPRK|p.N914Tfs*7|1|0.12|ENSG00000152894|chr6:127996924-127996924|T/-|frameshift_variant;PTPRK|p.D908Ifs*13|1|0.39|ENSG00000152894|chr6:127996944-127996944|T/-|frameshift_variant;PTPRK|p.Y1034Tfs*61|1|0.4|ENSG00000152894|chr6:127985870-127985870|C/-|frameshift_variant;PTPRK|p.L1219*|2|0.16|ENSG00000152894|chr6:127981168-127981168|A/-|frameshift_variant;nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531466.1_1_6:128326139-128326361:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF	PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant	PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	530.7311401367188	2	530.731151	1059.44775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.594	1	28.263	27.763	28.763	-0.33138								0	0	0	0.53872	1	10289	10289		26.884	9.9414	1				25742	9793	16425	16511	24733	24733					-0.0795959709971612
QENEHIYNL	9	Unmodified	_QENEHIYNL_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	HCT116MG_D190212_S2	2	580.2720947265625	2	580.272552	1158.53055	0.28008	0.00016252	-0.61778	-0.00035848	-0.33771	-0.00019596	580.2721504421394	37.376	0.20672	37.273	37.129	37.335	-0.10318					6	3	2	0	0	0	0.026999	1	14028	14028		89.401	49.451	1	28890000			25743	2170	16426	16512	24734	24734					-0.04237240775705686
QENEIVQY	8	Unmodified	_QENEIVQY_					0	0	0		nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1;nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	MULTI-MSMS	HCT116MG_D190212_S3	3	511.743408203125	2	511.743096	1021.47164	-0.073475	-3.76E-05	0.45446	0.00023257	0.38099	0.00019497	511.7432248025508	36.42	0.31199	36.119	35.937	36.249	-0.30113					11	5	3	0	0	0	0.1772	1	13473	13473		78.149	26.52	1	5056000			25744	2633	16427	16513	24735	24735					-0.03823717070042676
QENGKVWSV	9	Unmodified	_QENGKVWSV_					0	0	0		ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	MULTI-MSMS	HCT116MG_D190212_S2	2	523.766845703125	2	523.766906	1045.51926	0.17134	8.9745E-05	0.22246	0.00011652	0.3938	0.00020626	523.7668045308551	37.77	0.20554	37.666	37.537	37.743	-0.10318					6	3	2	0	0	0	0.11363	1	14175	14175		55.503	11.644	1	36353000			25745	2033	16428	16514	24736	24736					-0.0016801807919364364
QENGKVWSV	9	Unmodified	_QENGKVWSV_					0	0	0		ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	ENSG00000105767|ENST00000222374|CADM4	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	523.766906	1045.51926	0.13259	6.9447E-05	-0.075133	-3.9352E-05	0.057458	3.0095E-05	523.7665881287534	38.07	0.17876	37.687	37.633	37.812	-0.38283	0.031001	0.00029574	NaN	55.503	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2269900			25746	2033	16428	16514							-0.0016801807919364364
QENGNVHAIA	10	Unmodified	_QENGNVHAIA_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	HCT116MG_D190212_S1	1	526.7598876953125	2	526.759612	1051.50467	0.32223	0.00016974	-0.13968	-7.358E-05	0.18255	9.616E-05	526.7596198506081	22.872	0.72928	22.872	22.637	23.366	0					37	13	5	0	0	0	0.01404	1	8098	8098		134.3	90.437	1	636290000			25747	2202	16429	16515	24737	24737					-0.019020902273268803
QENGNVHAIA	10	Unmodified	_QENGNVHAIA_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	HCT116MG_D190212_S1	1	1052.5120849609375	1	1052.51195	1051.50467	0.78339	0.00082453	-0.46785	-0.00049241	0.31555	0.00033212	1052.5114983151434	22.872	0.31236	22.872	22.689	23.001	0					11	5	3	0	0	0	0.0026164	1	8121	8121		173.69	133.74	1	15626000			25748	2202	16429	16515	24738	24738					-0.019020902273268803
QENGNVHAIA	10	Unmodified	_QENGNVHAIA_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	HCT116MG_D190212_S2	2	526.759765625	2	526.759612	1051.50467	0.35647	0.00018777	-0.13017	-6.857E-05	0.2263	0.0001192	526.7597896430375	23.294	0.88409	22.908	22.674	23.558	-0.3852					46	16	3	0	0	0	0.037995	2	8275	8275;8510		96.111	59.984	1	3610999999.9999995			25749	2202	16429	16515	24739;24740	24739					-0.019020902273268803
QENGNVHAIA	10	Unmodified	_QENGNVHAIA_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	HCT116MG_D190212_S2	2	1052.5128173828125	1	1052.51195	1051.50467	0.58973	0.0006207	0.16784	0.00017665	0.75757	0.00079735	1052.5120986768952	23.294	0.57114	22.908	22.726	23.297	-0.3852					27	10	4	0	0	0	0.0075788	1	8295	8295		160.69	120.74	1	329420000			25750	2202	16429	16515	24741	24741					-0.019020902273268803
QENGNVHAIA	10	Unmodified	_QENGNVHAIA_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7597045898438	2	526.759612	1051.50467	0.3202	0.00016867	-0.2092	-0.0001102	0.111	5.8471E-05	526.759766585787	22.744	1.8632	22.725	22.335	24.198	-0.018869					106	35	6	0	0	0	0.027291	2	7975	7975;8451		107.19	63.329	1	2866400000			25751	2202	16429	16515	24742;24743	24742					-0.019020902273268803
QENGNVHAIA	10	Unmodified	_QENGNVHAIA_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	HCT116MG_D190212_S3	3	1052.5126953125	1	1052.51195	1051.50467	0.52465	0.0005522	0.061734	6.4975E-05	0.58639	0.00061718	1052.5119946972998	22.744	0.45603	22.725	22.543	22.999	-0.018869					18	8	3	0	0	0	0.010123	1	7996	7996		148.27	108.32	1	92133000			25752	2202	16429	16515	24744	24744					-0.019020902273268803
QENGNVHAIA	10	Unmodified	_QENGNVHAIA_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	HCT116MG_D190212_S4	4	526.7599487304688	2	526.759612	1051.50467	0.24655	0.00012987	-0.089358	-4.707E-05	0.15719	8.2802E-05	526.7597276092254	23.074	1.0967	22.836	22.445	23.542	-0.23758					61	20	5	0	0	0	0.01404	2	8020	8020;8252		134.3	90.437	1	726420000			25753	2202	16429	16515	24745;24746	24745					-0.019020902273268803
QENGNVHAIA	10	Unmodified	_QENGNVHAIA_					0	0	0		ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	HCT116MG_D190212_S4	4	1052.51318359375	1	1052.51195	1051.50467	0.42283	0.00044503	0.47004	0.00049472	0.89287	0.00093975	1052.5123723999745	23.074	0.41839	22.836	22.655	23.074	-0.23758					15	7	3	0	0	0	0.011728	1	8050	8050		139.78	107	1	20207000			25754	2202	16429	16515	24747	24747					-0.019020902273268803
QENGSLVEI	9	Unmodified	_QENGSLVEI_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;RPL9|p.R115Q|1|0.4|ENSG00000163682|chr4:39456453-39456453|C/T|missense_variant;ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	988.495361328125	1	988.494566	987.48729	0.79212	0.00078301	0.52303	0.00051702	1.3152	0.0013	988.4948717478472	45.477	0.465	45.385	45.049	45.514	-0.092472					14	8	3	0	0	0	0.0094709	1	17284	17284		114.65	21.827	1	34967000			25755	4621	16430	16516	24748	24748					-0.006954305530030069
QENGSLVEI	9	Unmodified	_QENGSLVEI_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;RPL9|p.R115Q|1|0.4|ENSG00000163682|chr4:39456453-39456453|C/T|missense_variant;ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	988.4954223632812	1	988.494566	987.48729	0.83454	0.00082494	0.67933	0.00067151	1.5139	0.0014965	988.4956561924901	45.694	0.41614	45.383	45.148	45.564	-0.31094					12	7	2	0	0	0	0.010834	1	17122	17122		111.29	18.465	1	7391800			25756	4621	16430	16516	24749	24749					-0.006954305530030069
QENGSLVEI	9	Unmodified	_QENGSLVEI_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;RPL9|p.R115Q|1|0.4|ENSG00000163682|chr4:39456453-39456453|C/T|missense_variant;ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		1	988.494566	987.48729	0.61134	0.0006043	1.1694	0.001156	1.7808	0.0017603	988.4956701830602	45.425	0.20782	45.425	45.295	45.503	0	0.027205	0.00048576	NaN	114.65	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6793500			25757	4621	16430	16516							-0.006954305530030069
QENHGLAVP	9	Unmodified	_QENHGLAVP_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132;nc|nan|Q5T0Z8-4|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MSMS	HCT116MG_D190212_S3	3	482.74591064453125	2	482.745973	963.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.264	1	32.974	32.474	33.474	-0.29013								0	0	0	0.054343	1	12202	12202		69.105	16.837	1				25758	5970	16431	16517	24750	24750					-0.005805737677064826
QENNMMVLV	9	Unmodified	_QENNMMVLV_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-SECPEP	HCT116MG_D190212_S3	3	539.3026123046875	2	539.257002	1076.49945	0.42089	0.00022697	0.29709	0.00016021	0.71798	0.00038717	539.2572233205282	54.473	0.2092	54.178	54.034	54.243	-0.29587					5	3	2	0	0	0	0.10825	1	20645	20645		52.268	30.522	1	1825100			25759	1441	16432	16518	24751	24751					-0.03573853405828231
QENPHKYNP	9	Unmodified	_QENPHKYNP_					0	0	0		ENSG00000178338|ENST00000322434|ZNF354B	ENSG00000178338|ENST00000322434|ZNF354B	ENSG00000178338|ENST00000322434|ZNF354B	MULTI-SECPEP	HCT116MG_D190212_S2	2	564.3362426757812	2	563.767437	1125.52032	0.46018	0.00025944	0.34965	0.00019712	0.80984	0.00045656	563.7675957714989	17.16	0.36442	16.811	16.561	16.925	-0.34933					8	6	2	0	0	0	5.2335E-05	1	5826	5826		149.91	102.17	1	2195500			25760	5496	16433	16519	24752	24752					-0.03741803710295244
QENRKGLIA	9	Unmodified	_QENRKGLIA_					0	0	0		ENSG00000116288|ENST00000338639|PARK7;ENST00000460192.5_1_1:8025453-8031070:+|nuORF;ENST00000497113.1_1_1:8022845-8031696:+|nuORF;ENST00000465354.5_1_1:8022845-8031070:+|nuORF	ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	MULTI-MSMS	HCT116MG_D190212_S2	2	514.7963256835938	2	514.795998	1027.57744	0.42515	0.00021887	0.14012	7.2133E-05	0.56527	0.000291	514.7958939233389	24.021	0.25912	23.637	23.508	23.767	-0.38324					8	4	2	0	0	0	0.26536	1	8624	8624		34.402	2.3642	1	9182200			25761	2513	16434	16520	24753	24753					0.0647566356610696
QENSSGQSLF	10	Unmodified	_QENSSGQSLF_					0	0	0		CD22|p.F730L|1|0.21|ENSG00000012124|chr19:35345108-35345108|C/A|missense_variant	CD22|p.F730L|1|0.21|ENSG00000012124|chr19:35345108-35345108|C/A|missense_variant	CD22|p.F730L|1|0.21|ENSG00000012124|chr19:35345108-35345108|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	548.7495727539062	2	548.74891	1095.48327	0.50765	0.00027857	0.34431	0.00018894	0.85195	0.00046751	548.7488581044657	30.649	0.33211	30.285	30.181	30.513	-0.36416					21	13	2	0	0	0	0.67188	1	11065	11065		22.736	5.6234	1	5003400			25762	370	16435	16521	24754	24754					-0.06065520046695383
QENTESEYYA	10	Unmodified	_QENTESEYYA_					0	0	0		TGFB3|p.N142Ifs*72|1|0.22|ENSG00000119699|chr14:75971646-75971646|T/-|frameshift_variant;nc|ENSG00000119699|P10600-2|TGFB3;TGFB3|p.G295Vfs*74|1|0.28|ENSG00000119699|chr14:75963358-75963358|C/-|frameshift_variant;ENSG00000119699|ENST00000238682|TGFB3	TGFB3|p.N142Ifs*72|1|0.22|ENSG00000119699|chr14:75971646-75971646|T/-|frameshift_variant	TGFB3|p.N142Ifs*72|1|0.22|ENSG00000119699|chr14:75971646-75971646|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	617.2488403320312	2	617.24894	1232.48333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.965	1	31.69	31.19	32.19	-0.27514								0	0	0	0.90892	1	11698	11698		13.906	0	1				25763	2660	16436	16522	24755	24755					-0.1236156483735158
QENTQTPTV	9	Unmodified	_QENTQTPTV_					0	0	0		ENSG00000196531|ENST00000454682|NACA;ENST00000419462.1_1_8:102381493-102381775:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P;nc|ENSG00000196531|Q13765|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000253506|ENST00000521764|NACA2	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2461242675781	2	509.246003	1016.47745	0.45589	0.00023216	2.0287	0.0010331	2.4846	0.0012653	509.2458673589262	26.265	0.3106	25.903	25.713	26.024	-0.36164					12	5	3	0	0	0	0.057285	1	9539	9539		71.134	18.865	1	14909000			25764	6081	16437	16523	24756	24756					-0.030126185583867482
QEPLLDQISY	10	Unmodified	_QEPLLDQISY_					0	0	0			REV__ENSG00000181450|ENST00000343776|ZNF678	REV__ENSG00000181450|ENST00000343776|ZNF678	MULTI-SECPEP	HCT116MG_D190212_S1	1	603.71337890625	2	603.306061	1204.59757	0.42967	0.00025922	-1.3992	-0.00084415	-0.96955	-0.00058493	603.306520165679	19.808	0.157	19.808	19.704	19.861	0					4	2	2	0	0	0	0.29442	1	6867	6867		14.838	0.93222	1	1404000	+		25765	13691	16438	16524	24757	24757					0.003453697153872781
QEPQPWIQ	8	Unmodified	_QEPQPWIQ_					0	0	0		VEPH1|p.T738Hfs*27|1|0.26|ENSG00000197415|chr3:157265579-157265579|T/-|frameshift_variant;nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	VEPH1|p.T738Hfs*27|1|0.26|ENSG00000197415|chr3:157265579-157265579|T/-|frameshift_variant	VEPH1|p.T738Hfs*27|1|0.26|ENSG00000197415|chr3:157265579-157265579|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	513.2559814453125	2	513.256174	1024.49779	0.33668	0.0001728	-0.45861	-0.00023538	-0.12193	-6.258E-05	513.2558010111592	45.849	0.36334	45.538	45.305	45.668	-0.31094					9	6	2	0	0	0	0.51336	1	17187	17187		39.957	10.117	1	8523600			25766	6143	16439	16525	24758	24758					-0.013474031079113047
QEPQPWIQ	8	Unmodified	_QEPQPWIQ_					0	0	0		VEPH1|p.T738Hfs*27|1|0.26|ENSG00000197415|chr3:157265579-157265579|T/-|frameshift_variant;nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	VEPH1|p.T738Hfs*27|1|0.26|ENSG00000197415|chr3:157265579-157265579|T/-|frameshift_variant	VEPH1|p.T738Hfs*27|1|0.26|ENSG00000197415|chr3:157265579-157265579|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	513.25634765625	2	513.256174	1024.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.97	1	45.598	45.098	46.098	-0.37206								0	0	0	0.55681	1	16977	16977		39.957	0	1				25767	6143	16439	16525	24759	24759					-0.013474031079113047
QEPSPSQEGP	10	Unmodified	_QEPSPSQEGP_					0	0	0			REV__ENSG00000106477|ENST00000223208|CEP41	REV__ENSG00000106477|ENST00000223208|CEP41	MULTI-MSMS	HCT116MG_D190212_S4	4	528.738037109375	2	528.235635	1054.45672	0.38241	0.000202	0.18376	9.7071E-05	0.56617	0.00029907	528.2357436034432	31.09	0.5544	30.722	30.367	30.922	-0.3679					16	10	2	0	0	0	0.65652	1	11234	11234		24.021	1.2843	1	2238900	+		25768	11299	16440	16526	24760	24760					-0.06833208938041935
QEPTWSEY	8	Unmodified	_QEPTWSEY_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1039.4373779296875	1	1039.43672	1038.42944	1.0357	0.0010765	-0.27297	-0.00028374	0.7627	0.00079278	1039.4358540982003	47.707	0.41346	47.574	47.377	47.79	-0.13281					11	7	2	0	0	0	0.28659	1	18204	18204		60.39	24.345	1	22206000	+		25769	10426	16441	16527	24761	24761					-0.08823692478426892
QEPTWSEY	8	Unmodified	_QEPTWSEY_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1039.4375	1	1039.43672	1038.42944	0.63778	0.00066293	0.083807	8.7113E-05	0.72159	0.00075004	1039.4367166370764	47.893	0.43687	47.524	47.341	47.778	-0.36907					13	8	2	0	0	0	0.3916	1	17719	17719		50.855	14.811	1	4090800	+		25770	10426	16441	16527	24762	24762					-0.08823692478426892
QEPTWSEY	8	Unmodified	_QEPTWSEY_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1039.43672	1038.42944	0.81498	0.00084712	0.15255	0.00015857	0.96753	0.0010057	1039.436196930583	47.375	0.1718	47.375	47.269	47.441	0	-0.11642	0.00017304	NaN	60.39	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5447100	+		25771	10426	16441	16527							-0.08823692478426892
QEPTWSEY	8	Unmodified	_QEPTWSEY_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1039.43672	1038.42944	1.0357	0.0010765	-0.27297	-0.00028374	0.7627	0.00079278	1039.4358540982003	47.707	0.41346	47.574	47.377	47.79	-0.13281	0.083181	-0.00026926	NaN	60.39	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22206000	+		25772	10426	16441	16527							-0.08823692478426892
QEPTWSEY	8	Unmodified	_QEPTWSEY_					0	0	0			REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	REV__DYNC2H1|p.P3966Hfs*44|1|0.22|ENSG00000187240|chr11:103321194-103321194|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	1039.43672	1038.42944	0.63778	0.00066293	0.083807	8.7113E-05	0.72159	0.00075004	1039.4367166370764	47.893	0.43687	47.524	47.341	47.778	-0.36907	0.03324	0.00010159	NaN	60.39	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4090800	+		25773	10426	16441	16527							-0.08823692478426892
QEQDSRLWSP	10	Unmodified	_QEQDSRLWSP_					0	0	0		ENST00000557612.5_1_14:70795945-70826359:-|nuORF;ENST00000389912.6_1_14:70809414-70826359:-|nuORF	ENST00000557612.5_1_14:70795945-70826359:-|nuORF	ENST00000557612.5_1_14:70795945-70826359:-|nuORF	MSMS	HCT116MG_D190212_S1	1	623.2965087890625	2	623.296559	1244.57856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.299	1	39.299	38.799	39.799	0								0	0	0	2.7408E-26	1	14738	14738		222.22	126.1	1				25774	7597	16442	16528	24763	24763					-0.03394166855673575
QEQDSRLWSP	10	Unmodified	_QEQDSRLWSP_					0	0	0		ENST00000557612.5_1_14:70795945-70826359:-|nuORF;ENST00000389912.6_1_14:70809414-70826359:-|nuORF	ENST00000557612.5_1_14:70795945-70826359:-|nuORF	ENST00000557612.5_1_14:70795945-70826359:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	623.29736328125	2	623.296559	1244.57856	0.52527	0.0003274	0.32711	0.00020389	0.85238	0.00053129	623.2966270792143	39.546	0.97285	39.468	38.916	39.889	-0.077839					48	18	3	0	0	0	0.00046105	1	14820	14820		187.14	110.32	1	339620000			25775	7597	16442	16528	24764	24764					-0.03394166855673575
QEQDSRLWSP	10	Unmodified	_QEQDSRLWSP_					0	0	0		ENST00000557612.5_1_14:70795945-70826359:-|nuORF;ENST00000389912.6_1_14:70809414-70826359:-|nuORF	ENST00000557612.5_1_14:70795945-70826359:-|nuORF	ENST00000557612.5_1_14:70795945-70826359:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	623.296559	1244.57856	0.32338	0.00020156	0.51088	0.00031843	0.83426	0.00051999	623.2966756772092	39.735	1.0309	39.434	38.872	39.903	-0.30137	-0.017071	9.6139E-05	NaN	187.14	112	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118160000			25776	7597	16442	16528							-0.03394166855673575
QEQEDLELA	9	Unmodified	_QEQEDLELA_					0	0	0		ENSG00000127527|ENST00000455140|EPS15L1;nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	ENSG00000127527|ENST00000455140|EPS15L1	ENSG00000127527|ENST00000455140|EPS15L1	MULTI-MSMS	HCT116MG_D190212_S1	1	537.7508544921875	2	537.751118	1073.48768	0.42581	0.00022898	-1.0466	-0.00056279	-0.62075	-0.00033381	537.7505949751411	22.872	0.36468	22.872	22.689	23.054	0					13	6	3	0	0	0	0.069315	1	8120	8120		65.235	25.285	1	23920000			25777	2969	16443	16529	24765	24765					-0.046120556238065546
QEQEDLELA	9	Unmodified	_QEQEDLELA_					0	0	0		ENSG00000127527|ENST00000455140|EPS15L1;nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	ENSG00000127527|ENST00000455140|EPS15L1	ENSG00000127527|ENST00000455140|EPS15L1	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7510375976562	2	537.751118	1073.48768	0.41383	0.00022254	-0.87087	-0.00046831	-0.45704	-0.00024577	537.750815444163	23.294	0.46711	22.908	22.726	23.193	-0.3852					19	8	4	0	0	0	0.049545	1	8296	8296		74.929	27.18	1	82080000			25778	2969	16443	16529	24766	24766					-0.046120556238065546
QEQEDLELA	9	Unmodified	_QEQEDLELA_					0	0	0		ENSG00000127527|ENST00000455140|EPS15L1;nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	ENSG00000127527|ENST00000455140|EPS15L1	ENSG00000127527|ENST00000455140|EPS15L1	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7506713867188	2	537.751118	1073.48768	0.3874	0.00020833	0.076901	4.1353E-05	0.4643	0.00024968	537.7510256899643	22.744	0.45654	22.725	22.439	22.896	-0.018869					11	8	2	0	0	0	0.39784	1	7990	7990		22.736	2.3217	1	23942000			25779	2969	16443	16529	24767	24767					-0.046120556238065546
QEQEDLELA	9	Unmodified	_QEQEDLELA_					0	0	0		ENSG00000127527|ENST00000455140|EPS15L1;nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	ENSG00000127527|ENST00000455140|EPS15L1	ENSG00000127527|ENST00000455140|EPS15L1	MULTI-MSMS	HCT116MG_D190212_S4	4	537.750732421875	2	537.751118	1073.48768	0.26536	0.0001427	-0.7491	-0.00040283	-0.48374	-0.00026013	537.7508876756385	23.074	0.41839	22.836	22.655	23.074	-0.23758					17	7	4	0	0	0	0.049545	1	8052	8052		74.929	27.18	1	24305000			25780	2969	16443	16529	24768	24768					-0.046120556238065546
QEQEGWYRA	9	Unmodified	_QEQEGWYRA_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MSMS	HCT116MG_D190212_S4	4	583.3151245117188	2	583.764894	1165.51524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.526	1	33.142	32.642	33.642	-0.38396								0	0	0	0.2496	1	12208	12208		43.772	7.6454	1				25781	5857	16444	16530	24769	24769					-0.06090107572890702
QEQEIEHHLA	10	Unmodified	_QEQEIEHHLA_					0	0	0		CCDC50|p.A220Pfs*52|1|0.42|ENSG00000152492|chr3:191380870-191380870|A/-|frameshift_variant;nc|ENSG00000152492|Q8IVM0|CCDC50;CCDC50|p.S227Rfs*18|1|0.03|ENSG00000152492|chr3:191380895-191380896|-/TAGG|frameshift_variant;ENSG00000152492|ENST00000392455|CCDC50	CCDC50|p.A220Pfs*52|1|0.42|ENSG00000152492|chr3:191380870-191380870|A/-|frameshift_variant	CCDC50|p.A220Pfs*52|1|0.42|ENSG00000152492|chr3:191380870-191380870|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	617.2969970703125	2	617.296559	1232.57856	0.49596	0.00030615	0.30193	0.00018638	0.79788	0.00049253	617.2967530356724	23.813	0.20856	23.429	23.299	23.508	-0.38324					8	3	3	0	0	0	0.072018	1	8535	8535		79.596	54.605	1	11174000			25782	353	16445	16531	24770	24770					-0.028421668556802615
QEQEIEHHLA	10	Unmodified	_QEQEIEHHLA_					0	0	0		CCDC50|p.A220Pfs*52|1|0.42|ENSG00000152492|chr3:191380870-191380870|A/-|frameshift_variant;nc|ENSG00000152492|Q8IVM0|CCDC50;CCDC50|p.S227Rfs*18|1|0.03|ENSG00000152492|chr3:191380895-191380896|-/TAGG|frameshift_variant;ENSG00000152492|ENST00000392455|CCDC50	CCDC50|p.A220Pfs*52|1|0.42|ENSG00000152492|chr3:191380870-191380870|A/-|frameshift_variant	CCDC50|p.A220Pfs*52|1|0.42|ENSG00000152492|chr3:191380870-191380870|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	617.2971801757812	2	617.296559	1232.57856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.196	1	23.157	22.657	23.657	-0.03968								0	0	0	0.84701	1	8178	8178		22.736	6.5872	1				25783	353	16445	16531	24771	24771					-0.028421668556802615
QEQEQEQQP	9	Unmodified	_QEQEQEQQP_					0	0	0			REV__ASPSCR1|p.R299Q|1|0.13|ENSG00000169696|chr17:81996809-81996809|G/A|missense_variant	REV__ASPSCR1|p.R299Q|1|0.13|ENSG00000169696|chr17:81996809-81996809|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	572.2486572265625	2	572.249274	1142.484	0.51645	0.00029554	-0.7637	-0.00043703	-0.24724	-0.00014148	572.248660249457	14.744	0.78037	14.825	14.568	15.348	0.081243					24	14	2	0	0	0	0.53593	1	4808	4808		14.838	0.43289	1	1564800	+		25784	9994	16446	16532	24772	24772					-0.08154725397662332
QEQERIQA	8	Unmodified	_QEQERIQA_					0	0	0		nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;PARD3|p.S1335Lfs*15|1|0.17|ENSG00000148498|chr10:34111237-34111238|-/G|frameshift_variant;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3	nc|ENSG00000148498|Q8TEW0-3|PARD3	nc|ENSG00000148498|Q8TEW0-3|PARD3	MULTI-SECPEP	HCT116MG_D190212_S2	2	501.238037109375	2	501.254163	1000.49377	0.30694	0.00015386	1.0355	0.00051904	1.3424	0.00067289	501.25419082019573	21.915	0.20844	21.53	21.375	21.583	-0.38503					7	3	3	0	0	0	0.19194	1	7735	7735		43.858	0	1	7147500			25785	4027	16447	16533	24773	24773					-0.006454926016090212
QEQESVKQA	9	Unmodified	_QEQESVKQA_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	HCT116MG_D190212_S2	2	524.2611083984375	2	523.759278	1045.504	0.28259	0.00014801	0.11167	5.849E-05	0.39426	0.0002065	523.7592780878138	15.841	0.26102	15.507	15.376	15.637	-0.33451					10	4	3	0	0	0	3.8859E-05	1	5310	5310		209.87	67.791	1	18348000			25786	1620	16448	16534	24774	24774					-0.01692929667046883
QEQFNSIAA	9	Unmodified	_QEQFNSIAA_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;ENST00000462875.1_1_6:31609004-31609235:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6;ENST00000462875.1_1_6:31609004-31609235:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	HCT116MG_D190212_S3	3	504.7448425292969	2	504.243264	1006.47197	0.032648	1.6462E-05	0.32527	0.00016402	0.35792	0.00018048	504.24329540890693	36.108	0.36391	35.807	35.574	35.938	-0.30042					14	6	3	0	0	0	0.027442	1	13321	13321		88.954	69.697	1	18163000			25787	6335;8069	16449	16535	24775	24775					-0.031002973501813358
QEQFNSIAA	9	Unmodified	_QEQFNSIAA_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;ENST00000462875.1_1_6:31609004-31609235:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6;ENST00000462875.1_1_6:31609004-31609235:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	HCT116MG_D190212_S3	3	1007.4794921875	1	1007.47925	1006.47197	0.26721	0.00026921	-0.4506	-0.00045397	-0.1834	-0.00018477	1007.4786404720204	36.108	0.26017	35.807	35.678	35.938	-0.30042					6	4	2	0	0	0	0.049545	1	13343	13343		74.929	53.182	1	4941700			25788	6335;8069	16449	16535	24776	24776					-0.031002973501813358
QEQFNSIAA	9	Unmodified	_QEQFNSIAA_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;ENST00000462875.1_1_6:31609004-31609235:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6;ENST00000462875.1_1_6:31609004-31609235:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	HCT116MG_D190212_S4	4	504.24298095703125	2	504.243264	1006.47197	0.46075	0.00023233	-0.18084	-9.1185E-05	0.27991	0.00014114	504.24311827468506	36.174	0.34737	35.788	35.623	35.97	-0.38558					13	6	3	0	0	0	0.027442	1	13221	13221		88.954	67.207	1	11401000			25789	6335;8069	16449	16535	24777	24777					-0.031002973501813358
QEQIEAIH	8	Unmodified	_QEQIEAIH_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	484.2691955566406	2	484.245806	966.47706	0.19998	9.6839E-05	0.32053	0.00015522	0.52051	0.00025206	484.2460145939037	24.798	0.51987	24.422	24.192	24.711	-0.37556					17	9	3	0	0	0	0.6854	1	8958	8958		24.674	4.2203	1	14628000			25790	1652	16450	16536	24778	24778					-0.007519934875631407
QEQIEAIHKA	10	Unmodified	_QEQIEAIHKA_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	389.5436706542969	3	389.543655	1165.60914	-0.1593	-6.2056E-05	0.35196	0.0001371	0.19265	7.5047E-05	389.5436771941494	23.184	0.26044	23.184	23.001	23.262	0					10	4	3	0	0	0	0.04605	2	8250	8199;8250		70.496	34.101	1	23029000			25791	1652	16451	16537	24779;24780	24780					0.032956115293927724
QEQIEAIHKA	10	Unmodified	_QEQIEAIHKA_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	583.8062133789062	2	583.811845	1165.60914	0.51416	0.00030017	-0.26341	-0.00015378	0.25075	0.00014639	583.8114469078348	23.184	0.46857	23.184	22.898	23.366	0					14	8	3	0	0	0	0.0052575	2	8214	8214;8296		166.77	100.31	1	36666000			25792	1652	16451	16537	24781;24782	24781					0.032956115293927724
QEQIEAIHKA	10	Unmodified	_QEQIEAIHKA_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	583.8126831054688	2	583.811845	1165.60914	0.52603	0.0003071	0.21661	0.00012646	0.74264	0.00043356	583.811977945797	23.707	0.36466	23.323	23.143	23.508	-0.38324					17	6	4	0	0	0	8.2998E-11	1	8456	8456		224.51	148.75	1	189500000			25793	1652	16451	16537	24783	24783					0.032956115293927724
QEQIEAIHKA	10	Unmodified	_QEQIEAIHKA_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	389.5437927246094	3	389.543655	1165.60914	0.084186	3.2794E-05	0.30657	0.00011942	0.39075	0.00015222	389.54372720613645	23.708	0.31239	23.325	23.143	23.456	-0.38324					9	5	2	0	0	0	0.086065	1	8466	8466		59.013	31.925	1	83202000			25794	1652	16451	16537	24784	24784					0.032956115293927724
QEQIEAIHKA	10	Unmodified	_QEQIEAIHKA_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	583.8121948242188	2	583.811845	1165.60914	0.39584	0.0002311	0.27641	0.00016137	0.67226	0.00039247	583.8118914121244	23.148	0.36456	23.108	22.927	23.291	-0.03968					21	6	5	0	0	0	8.2998E-11	1	8160	8160		224.51	148.75	1	51026000			25795	1652	16451	16537	24785	24785					0.032956115293927724
QEQIEAIHKA	10	Unmodified	_QEQIEAIHKA_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	389.54351806640625	3	389.543655	1165.60914	-0.11333	-4.4146E-05	0.092985	3.6222E-05	-0.020341	-7.9238E-06	389.5436221290143	23.149	0.41644	23.109	22.875	23.291	-0.03968					19	7	4	0	0	0	0.040924	1	8161	8161		74.306	43.875	1	45731000			25796	1652	16451	16537	24786	24786					0.032956115293927724
QEQIEAIHKA	10	Unmodified	_QEQIEAIHKA_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	583.8120727539062	2	583.811845	1165.60914	0.19354	0.00011299	0.68658	0.00040083	0.88011	0.00051382	583.8119465763153	23.436	0.26056	23.189	23.011	23.272	-0.24775					10	4	3	0	0	0	8.2909E-07	1	8212	8212		210.93	121.53	1	13572000			25797	1652	16451	16537	24787	24787					0.032956115293927724
QEQIEAIHKA	10	Unmodified	_QEQIEAIHKA_					0	0	0		SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant;nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	SF3A1|p.R642Afs*5|1|0.33|ENSG00000099995|chr22:30337717-30337717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	389.5438232421875	3	389.543655	1165.60914	-0.059588	-2.3212E-05	0.0013561	5.2828E-07	-0.058231	-2.2684E-05	389.54362954399215	23.441	0.26016	23.194	23.063	23.324	-0.24775					11	4	3	0	0	0	0.13161	1	8214	8214		59.013	26.115	1	9083100			25798	1652	16451	16537	24788	24788					0.032956115293927724
QEQLYLYSDA	10	Unmodified	_QEQLYLYSDA_					0	0	0			REV__ENST00000411526.5_1_7:154736168-154736312:+|nuORF	REV__ENST00000411526.5_1_7:154736168-154736312:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	616.2931518554688	2	615.287868	1228.56118	0.50814	0.00031265	-2.544	-0.0015653	-2.0358	-0.0012526	615.2855890184106	23.389	0.9927	23.142	22.435	23.428	-0.24775					35	18	3	0	0	0	0.7974	1	8088	8088		12.241	0	1	67688000	+		25799	15444	16452	16538	24789	24789					-0.04395507181334324
QEQPFKFSY	9	Unmodified	_QEQPFKFSY_					0	0	0		ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-3|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	587.2827758789062	2	587.282389	1172.55022	0.55187	0.0003241	0.085624	5.0285E-05	0.6375	0.00037439	587.2823676449301	46.067	0.35891	45.966	45.761	46.12	-0.1014					13	6	3	0	0	0	0.0041644	1	17545	17545		148.27	148.27	1	15445000			25800	829	16453	16539	24790	24790					-0.02914864764943559
QEQPRGPAELH	11	Unmodified	_QEQPRGPAELH_					0	0	0			REV__SSUH2|p.P50H|1|0.39|ENSG00000125046|chr3:8633790-8633790|G/T|missense_variant	REV__SSUH2|p.P50H|1|0.39|ENSG00000125046|chr3:8633790-8633790|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	631.318359375	2	631.317825	1260.6211	0.407	0.00025694	-0.028307	-1.7871E-05	0.37869	0.00023907	631.3176862990625	22.034	0.46752	21.806	21.572	22.039	-0.22777					18	8	3	0	0	0	0.69464	1	7666	7666		23.79	4.4278	1	7446600	+		25801	17595	16454	16540	24791	24791					0.0012122827256462188
QEQPRGPAELH	11	Unmodified	_QEQPRGPAELH_					0	0	0			REV__SSUH2|p.P50H|1|0.39|ENSG00000125046|chr3:8633790-8633790|G/T|missense_variant	REV__SSUH2|p.P50H|1|0.39|ENSG00000125046|chr3:8633790-8633790|G/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	631.317825	1260.6211	0.57842	0.00036517	1.3556	0.00085583	1.934	0.001221	631.3180686961529	22.203	0.312	21.818	21.635	21.947	-0.3852	0.013044	0.0014102	NaN	23.79	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4961400	+		25802	17595	16454	16540							0.0012122827256462188
QEQPRGPAELH	11	Unmodified	_QEQPRGPAELH_					0	0	0			REV__SSUH2|p.P50H|1|0.39|ENSG00000125046|chr3:8633790-8633790|G/T|missense_variant	REV__SSUH2|p.P50H|1|0.39|ENSG00000125046|chr3:8633790-8633790|G/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	631.317825	1260.6211	0.407	0.00025694	-0.028307	-1.7871E-05	0.37869	0.00023907	631.3176862990625	22.034	0.46752	21.806	21.572	22.039	-0.22777	0.0010057	-0.00033717	NaN	23.79	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7446600	+		25803	17595	16454	16540							0.0012122827256462188
QEQQAFKEA	9	Unmodified	_QEQQAFKEA_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7625732421875	2	539.76182	1077.50909	0.37167	0.00020062	1.3954	0.00075321	1.7671	0.00095382	539.7627454523117	22.926	0.24812	22.907	22.751	22.999	-0.018869					9	4	3	0	0	0	0.014023	1	8078	8078		103.42	45.697	1	10392000			25804	3389	16455	16541	24792	24792					-0.026566258044113056
QEQQAFKEA	9	Unmodified	_QEQQAFKEA_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MATCH	HCT116MG_D190212_S1	1		2	539.76182	1077.50909	0.46138	0.00024903	2.3891	0.0012895	2.8505	0.0015386	539.7633221508869	22.975	0.15584	22.975	22.845	23.001	0	0.0049838	0.00040772	NaN	103.42	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4116400			25805	3389	16455	16541							-0.026566258044113056
QEQQAFKEA	9	Unmodified	_QEQQAFKEA_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MATCH	HCT116MG_D190212_S2	2		2	539.76182	1077.50909	0.41789	0.00022556	1.6729	0.00090299	2.0908	0.0011285	539.7626914492223	23.449	0.20677	23.063	22.934	23.141	-0.3852	0.093383	-0.00036539	NaN	103.42	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13594000			25806	3389	16455	16541							-0.026566258044113056
QEQQAVYDFK	10	Unmodified	_QEQQAVYDFK_					0	0	0			REV__NCK1-STAG1|2|fusion	REV__NCK1-STAG1|2|fusion	MULTI-MSMS	HCT116MG_D190212_S4	4	628.2994384765625	2	628.30131	1254.58807	0.41227	0.00025903	-2.6687	-0.0016767	-2.2564	-0.0014177	628.2999011805477	27.599	0.40587	27.278	26.992	27.398	-0.32157					11	7	2	0	0	0	0.76143	1	9877	9877		15.248	1.3424	1	2390300	+		25807	17340	16456	16542	24793	24793					-0.029043985701491692
QEQQDRLEGF	10	Unmodified	_QEQQDRLEGF_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	HCT116MG_D190212_S2	2	625.294677734375	2	625.294016	1248.57348	0.54281	0.00033941	-0.03267	-2.0429E-05	0.51014	0.00031898	625.2941812624189	22.762	0.57131	22.377	21.999	22.57	-0.3852					23	10	3	0	0	0	0.52513	1	8089	8089		33.445	8.4539	1	14556000	+		25808	14137;14012;14155	16457	16543	24794	24794					-0.0408647071831183
QEQQDRLEGF	10	Unmodified	_QEQQDRLEGF_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	HCT116MG_D190212_S4	4	625.2942504882812	2	625.294016	1248.57348	0.25008	0.00015637	0.65148	0.00040737	0.90156	0.00056374	625.2947278018305	22.724	2.1355	22.486	21.406	23.542	-0.23758					82	40	5	0	0	0	0.61405	1	7831	7831		27.223	3.4335	1	28138000	+		25809	14137;14012;14155	16457	16543	24795	24795					-0.0408647071831183
QEQQDRLEGF	10	Unmodified	_QEQQDRLEGF_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	625.294016	1248.57348	0.54281	0.00033941	-0.03267	-2.0429E-05	0.51014	0.00031898	625.2941812624189	22.762	0.57131	22.377	21.999	22.57	-0.3852	-0.10015	-0.00033699	NaN	33.445	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14556000	+		25810	14137;14012;14155	16457	16543							-0.0408647071831183
QEQQDRLEGF	10	Unmodified	_QEQQDRLEGF_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	625.294016	1248.57348	0.38329	0.00023967	0.42038	0.00026286	0.80367	0.00050253	625.2946336588815	22.582	1.8115	22.563	21.657	23.469	-0.018869	0.085649	0.00022958	NaN	33.445	66	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30973000	+		25811	14137;14012;14155	16457	16543							-0.0408647071831183
QEQQHCSWHWW	11	Unmodified	_QEQQHCSWHWW_					0	0	0			REV__ENST00000392825.7_1_2:155157929-155158067:+|nuORF	REV__ENST00000392825.7_1_2:155157929-155158067:+|nuORF	MSMS	HCT116MG_D190212_S4	4	777.8170166015625	2	777.820209	1553.62587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.135	1	15.972	15.472	16.472	-0.16364								0	0	0	0.96157	1	5258	5258		0.26902	0.26902	1		+		25812	15317	16458	16544	24796	24796					-0.12880210856337726
QEQQRQQQEE	10	Unmodified	_QEQQRQQQEE_					0	0	0			REV__ENST00000460966.1_1_2:220100429-220100851:+|nuORF	REV__ENST00000460966.1_1_2:220100429-220100851:+|nuORF	MSMS	HCT116MG_D190212_S3	3	665.802978515625	2	665.802737	1329.59092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.048	1	16.134	15.634	16.634	0.085424								0	0	0	0.94551	1	5297	5297		5.7319	0	1		+		25813	12927	16459	16545	24797	24797					-0.06069175183279185
QEQRIMKEA	9	Unmodified	_QEQRIMKEA_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S1	1	566.7927856445312	2	566.792598	1131.57064	0.40264	0.00022821	-0.029215	-1.6559E-05	0.37342	0.00021165	566.7925601002163	20.149	0.15666	20.149	20.07	20.227	0					4	2	2	0	0	0	0.0063708	1	7048	7048		124.95	67.231	1	13837000			25814	4733	16460	16546	24798	24798					0.010119826232312334
QEQRIMKEA	9	Unmodified	_QEQRIMKEA_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S2	2	566.7923583984375	2	566.792598	1131.57064	0.44143	0.0002502	0.031749	1.7995E-05	0.47318	0.00026819	566.7925655838586	20.852	0.41711	20.469	20.286	20.703	-0.38288					21	7	4	0	0	0	2.9174E-05	2	7303	7303;7380		216.42	113	1	116920000			25815	4733	16460	16546	24799;24800	24799					0.010119826232312334
QEQRIMKEA	9	Unmodified	_QEQRIMKEA_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S2	2	378.19732666015625	3	378.197491	1131.57064	-0.15989	-6.047E-05	0.051939	1.9643E-05	-0.10795	-4.0826E-05	378.1974805683829	20.846	0.31283	20.464	20.286	20.599	-0.38255					11	5	3	0	0	0	0.045223	1	7311	7311		77.049	21.814	1	32260000			25816	4733	16460	16546	24801	24801					0.010119826232312334
QEQRIMKEA	9	Unmodified	_QEQRIMKEA_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S3	3	566.7928466796875	2	566.792598	1131.57064	0.39451	0.0002236	-0.042331	-2.3993E-05	0.35218	0.00019961	566.7926557222708	19.821	0.46889	19.881	19.75	20.219	0.05983					23	8	4	0	0	0	4.7082E-08	1	6822	6822		230.41	116.21	1	70429000			25817	4733	16460	16546	24802	24802					0.010119826232312334
QEQRIMKEA	9	Unmodified	_QEQRIMKEA_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S3	3	378.1973571777344	3	378.197491	1131.57064	-0.10931	-4.1342E-05	0.0085803	3.245E-06	-0.10073	-3.8097E-05	378.19742917050246	19.853	0.41682	19.906	19.743	20.16	0.052557					17	7	4	0	0	0	0.086419	1	6829	6829		60.899	9.4841	1	30873000			25818	4733	16460	16546	24803	24803					0.010119826232312334
QEQRIMKEA	9	Unmodified	_QEQRIMKEA_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S4	4	566.7926635742188	2	566.792598	1131.57064	0.44648	0.00025306	0.1903	0.00010786	0.63678	0.00036092	566.7925750358435	20.268	0.46788	20.066	19.936	20.404	-0.20133					15	8	3	0	0	0	0.0034408	1	6930	6930		162.31	91.982	1	20556000			25819	4733	16460	16546	24804	24804					0.010119826232312334
QEQRIMKEA	9	Unmodified	_QEQRIMKEA_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S4	4	378.5317687988281	3	378.197491	1131.57064	0.045006	1.7021E-05	-0.67788	-0.00025637	-0.63288	-0.00023935	378.5317891112304	20.289	0.41588	20.087	19.936	20.352	-0.20133					12	7	3	0	0	0	0.10554	1	6951	6951		57.108	22.886	1	7643600			25820	4733	16460	16546	24805	24805					0.010119826232312334
QEQRIMKEA	9	Oxidation (M)	_QEQRIM(Oxidation (M))KEA_		QEQRIM(1)KEA		QEQRIM(91)KEA	0	0	1		ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	HCT116MG_D190212_S2	2	574.7896728515625	2	574.790055	1147.56556	0.24752	0.00014227	-0.33718	-0.00019381	-0.089658	-5.1534E-05	574.7898385297443	15.737	0.26107	15.402	15.324	15.585	-0.33451					9	4	3	0	0	0	0.025331	1	5273	5273		91.085	52.909	1	8261200			25821	4733	16460	16547	24806	24806		103			-0.002323212394003349
QEQRQAFAP	9	Unmodified	_QEQRQAFAP_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MSMS	HCT116MG_D190212_S1	1	537.7698364257812	2	537.76998	1073.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.959	1	27.959	27.459	28.459	0								0	0	0	0.090763	1	10167	10167		58.679	6.4105	1				25822	6295	16461	16548	24807	24807					-0.00841499847660998
QEQRQAFAP	9	Unmodified	_QEQRQAFAP_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7701416015625	2	537.76998	1073.52541	0.45865	0.00024665	-0.044063	-2.3696E-05	0.41459	0.00022295	537.7697695873045	28.458	0.30984	28.128	27.926	28.236	-0.32987					9	5	2	0	0	0	0.0045841	1	10398	10398		142.08	93.734	1	31419000			25823	6295	16461	16548	24808	24808					-0.00841499847660998
QEQRQAFAP	9	Unmodified	_QEQRQAFAP_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2722778320312	2	537.76998	1073.52541	0.45081	0.00024243	0.20633	0.00011096	0.65714	0.00035339	537.7698122834938	28.363	0.41752	28.157	27.916	28.333	-0.20593					22	7	4	0	0	0	0.0045841	2	10252	10252;10261		142.08	93.734	1	19979000			25824	6295	16461	16548	24809;24810	24809					-0.00841499847660998
QEQRQAFAP	9	Unmodified	_QEQRQAFAP_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-MSMS	HCT116MG_D190212_S4	4	537.7703247070312	2	537.76998	1073.52541	0.39932	0.00021474	0.09567	5.1449E-05	0.49499	0.00026619	537.7699576284627	28.612	0.46779	28.28	27.908	28.376	-0.33138					18	8	3	0	0	0	0.01405	1	10276	10276		103.35	57.333	1	8294200			25825	6295	16461	16548	24811	24811					-0.00841499847660998
QEQSSVVRA	9	Unmodified	_QEQSSVVRA_					0	0	0		ENSG00000167755|ENST00000310157|KLK6	ENSG00000167755|ENST00000310157|KLK6	ENSG00000167755|ENST00000310157|KLK6	MSMS	HCT116MG_D190212_S1	1	502.2622375488281	2	502.261988	1002.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.595	1	20.595	20.095	21.095	0								0	0	0	0.403	1	7206	7206		33.445	6.5612	1				25826	4954	16462	16549	24812	24812					0.008267939154393389
QEQSSVVRA	9	Unmodified	_QEQSSVVRA_					0	0	0		ENSG00000167755|ENST00000310157|KLK6	ENSG00000167755|ENST00000310157|KLK6	ENSG00000167755|ENST00000310157|KLK6	MULTI-MSMS	HCT116MG_D190212_S2	2	502.2620544433594	2	502.261988	1002.50942	0.4116	0.00020673	-0.0042937	-2.1566E-06	0.40731	0.00020458	502.2617852089546	21.098	0.31247	20.715	20.546	20.859	-0.38288					11	5	3	0	0	0	0.0201	1	7416	7416		96.367	0.081824	1	16166000			25827	4954	16462	16549	24813	24813					0.008267939154393389
QEQSSVVRA	9	Unmodified	_QEQSSVVRA_					0	0	0		ENSG00000167755|ENST00000310157|KLK6	ENSG00000167755|ENST00000310157|KLK6	ENSG00000167755|ENST00000310157|KLK6	MULTI-MSMS	HCT116MG_D190212_S3	3	502.2620849609375	2	502.261988	1002.50942	0.30689	0.00015414	0.14141	7.1023E-05	0.4483	0.00022516	502.26200838654415	20.348	0.31236	20.396	20.207	20.52	0.048107					12	5	3	0	0	0	0.012596	1	7031	7031		106.94	27.344	1	14900000			25828	4954	16462	16549	24814	24814					0.008267939154393389
QEQSSVVRA	9	Unmodified	_QEQSSVVRA_					0	0	0		ENSG00000167755|ENST00000310157|KLK6	ENSG00000167755|ENST00000310157|KLK6	ENSG00000167755|ENST00000310157|KLK6	MULTI-MSMS	HCT116MG_D190212_S4	4	502.2620544433594	2	502.261988	1002.50942	0.35688	0.00017924	0.23489	0.00011798	0.59177	0.00029722	502.2619705301443	20.647	0.31182	20.445	20.3	20.612	-0.20133					8	5	2	0	0	0	0.02327	2	7098	7097;7098		93.166	31.808	1	4273300			25829	4954	16462	16549	24815;24816	24816					0.008267939154393389
QERCESLVDIY	11	Carbamidomethyl (C)	_QERC(Carbamidomethyl (C))ESLVDIY_	QERC(1)ESLVDIY		QERC(44)ESLVDIY		0	1	0		nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	nc|ENSG00000166888|P42226-2|STAT6	nc|ENSG00000166888|P42226-2|STAT6	MULTI-MSMS	HCT116MG_D190212_S2	2	706.330078125	2	706.329741	1410.64493	1.001	0.00070706	-0.33138	-0.00023407	0.66965	0.00047299	706.3295765000239	52.621	0.4129	52.434	52.244	52.657	-0.18725					17	7	3	0	0	0	0.52486	1	20202	20202		43.772	16.144	1	60796000			25830	4887	16463	16550	24817	24817	24				-0.0439671907590764
QERCESLVDIY	11	Carbamidomethyl (C)	_QERC(Carbamidomethyl (C))ESLVDIY_					0	1	0		nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	nc|ENSG00000166888|P42226-2|STAT6	nc|ENSG00000166888|P42226-2|STAT6	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	706.329741	1410.64493	0.77238	0.00054555	-0.45648	-0.00032243	0.31589	0.00022312	706.8310014032268	52.279	0.25792	52.279	52.125	52.383	0	-0.11937	-0.00023866	NaN	43.772	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9956400			25831	4887	16463	16550			24				-0.0439671907590764
QERCESLVDIY	11	Carbamidomethyl (C)	_QERC(Carbamidomethyl (C))ESLVDIY_					0	1	0		nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	nc|ENSG00000166888|P42226-2|STAT6	nc|ENSG00000166888|P42226-2|STAT6	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	706.329741	1410.64493	1.001	0.00070706	-0.33138	-0.00023407	0.66965	0.00047299	706.3295765000239	52.621	0.4129	52.434	52.244	52.657	-0.18725	0.03523	-6.1937E-05	NaN	43.772	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60796000			25832	4887	16463	16550			24				-0.0439671907590764
QERCESLVDIY	11	Carbamidomethyl (C)	_QERC(Carbamidomethyl (C))ESLVDIY_					0	1	0		nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	nc|ENSG00000166888|P42226-2|STAT6	nc|ENSG00000166888|P42226-2|STAT6	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	706.329741	1410.64493	0.83971	0.00059311	0.23207	0.00016392	1.0718	0.00075703	706.3297730137574	52.789	0.209	52.483	52.352	52.561	-0.30639	0.084145	0.00073403	NaN	43.772	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3598000			25833	4887	16463	16550			24				-0.0439671907590764
QERDGFGGLAA	11	Unmodified	_QERDGFGGLAA_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;ENST00000487406.2_1_9:133495824-133506568:+|nuORF;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	HCT116MG_D190212_S1	1	560.7728271484375	2	560.772719	1119.53089	0.64169	0.00035984	-0.14334	-8.0382E-05	0.49834	0.00027946	560.7726018408742	37.275	0.30107	37.275	37.146	37.447	0					8	5	2	0	0	0	0.1655	1	13933	13933		79.427	27.797	1	22965000			25834	2104	16464	16551	24818	24818					-0.02409821055834982
QERDGFGGLAA	11	Unmodified	_QERDGFGGLAA_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;ENST00000487406.2_1_9:133495824-133506568:+|nuORF;FUBP3|p.P395Lfs*27|2|0.27|ENSG00000107164|chr9:130630689-130630689|C/-|frameshift_variant	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MSMS	HCT116MG_D190212_S3	3	560.7730102539062	2	560.772719	1119.53089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.543	1	37.242	36.742	37.742	-0.30137								0	0	0	0.87053	1	13910	13910		23.79	1.0535	1				25835	2104	16464	16551	24819	24819					-0.02409821055834982
QERDGIINA	9	Unmodified	_QERDGIINA_					0	0	0		nc|ENSG00000168778|Q96GX1-2|TCTN2;ENSG00000168778|ENST00000303372|TCTN2	nc|ENSG00000168778|Q96GX1-2|TCTN2	nc|ENSG00000168778|Q96GX1-2|TCTN2	MSMS	HCT116MG_D190212_S2	2	508.2622985839844	2	508.261988	1014.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.475	1	29.174	28.674	29.674	-0.30095								0	0	0	0.054343	1	10798	10798		69.105	27.265	1				25836	5029	16465	16552	24820	24820					0.002747939154346568
QERDGIINA	9	Unmodified	_QERDGIINA_					0	0	0		nc|ENSG00000168778|Q96GX1-2|TCTN2;ENSG00000168778|ENST00000303372|TCTN2	nc|ENSG00000168778|Q96GX1-2|TCTN2	nc|ENSG00000168778|Q96GX1-2|TCTN2	MSMS	HCT116MG_D190212_S3	3	508.26416015625	2	508.261988	1014.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.363	1	29.141	28.641	29.641	-0.22195								0	0	0	0.38321	1	10664	10664		34.402	2.2848	1				25837	5029	16465	16552	24821	24821					0.002747939154346568
QERDPGGITA	10	Unmodified	_QERDPGGITA_					0	0	0		ENSG00000099385|ENST00000215115|BCL7C;nc|ENSG00000099385|Q8WUZ0-2|BCL7C	ENSG00000099385|ENST00000215115|BCL7C	ENSG00000099385|ENST00000215115|BCL7C	MULTI-MSMS	HCT116MG_D190212_S2	2	522.259765625	2	522.259445	1042.50434	0.56635	0.00029578	0.27592	0.0001441	0.84227	0.00043988	522.2594410149804	24.228	0.26024	23.848	23.718	23.979	-0.38003					8	4	2	0	0	0	0.010123	1	8679	8679		148.27	85.695	1	22729000			25838	1636	16466	16553	24822	24822					-0.015215099471788562
QERDPGGITA	10	Unmodified	_QERDPGGITA_					0	0	0		ENSG00000099385|ENST00000215115|BCL7C;nc|ENSG00000099385|Q8WUZ0-2|BCL7C	ENSG00000099385|ENST00000215115|BCL7C	ENSG00000099385|ENST00000215115|BCL7C	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2598266601562	2	522.259445	1042.50434	0.28005	0.00014626	0.68657	0.00035857	0.96662	0.00050483	522.2600137768342	23.774	0.26062	23.712	23.53	23.791	-0.061449					9	4	3	0	0	0	0.092421	1	8414	8414		75.571	9.1139	1	5344700			25839	1636	16466	16553	24823	24823					-0.015215099471788562
QERDPGGITA	10	Unmodified	_QERDPGGITA_					0	0	0		ENSG00000099385|ENST00000215115|BCL7C;nc|ENSG00000099385|Q8WUZ0-2|BCL7C	ENSG00000099385|ENST00000215115|BCL7C	ENSG00000099385|ENST00000215115|BCL7C	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	522.259445	1042.50434	0.38248	0.00019975	-0.26291	-0.00013731	0.11957	6.2447E-05	522.2592744787461	23.758	0.20938	23.758	23.627	23.837	0	-0.014853	-0.00031574	NaN	148.27	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7052200			25840	1636	16466	16553							-0.015215099471788562
QEREPRRR	8	Unmodified	_QEREPRRR_					0	0	0		ENST00000429204.5_1_1:226925125-226925356:-|nuORF	ENST00000429204.5_1_1:226925125-226925356:-|nuORF	ENST00000429204.5_1_1:226925125-226925356:-|nuORF	MSMS	HCT116MG_D190212_S1	1	376.21148681640625	3	376.211122	1125.61154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.764	1	53.764	53.264	54.264	0								0	0	0	0.8837	1	20598	20598		0.45834	0	1				25841	7836	16467	16554	24824	24824					0.053755047777030995
QERFNGQA	8	Unmodified	_QERFNGQA_					0	0	0		MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant;nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MYPN|p.I891*|1|0.12|ENSG00000138347|chr10:68175423-68175423|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	474.7784118652344	2	475.227948	948.441343	0.20527	9.7549E-05	-1.0425	-0.00049542	-0.83723	-0.00039787	475.2274496594296	23.373	0.20843	23.334	23.187	23.396	-0.03968					5	3	2	0	0	0	0.30262	1	8251	8251		13.508	0	1	2639100			25842	3551	16468	16555	24825	24825					-0.03494030944568749
QERFRTVIS	9	Unmodified	_QERFRTVIS_					0	0	0		ENST00000342609.6_1_2:191857981-191858245:-|nuORF	ENST00000342609.6_1_2:191857981-191858245:-|nuORF	ENST00000342609.6_1_2:191857981-191858245:-|nuORF	MSMS	HCT116MG_D190212_S4	4	568.3123779296875	2	568.314554	1134.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.215	1	58.938	58.438	59.438	-0.27731								0	0	0	0.76983	1	22278	22278		1.4819	0.68827	1				25843	7231	16469	16556	24826	24826					0.052633351118629434
QERHFLQQA	9	Unmodified	_QERHFLQQA_					0	0	0		NUP62|p.D346G|1|0.28|ENSG00000213024|chr19:49908771-49908771|T/C|missense_variant;ENSG00000213024|ENST00000352066|NUP62	NUP62|p.D346G|1|0.28|ENSG00000213024|chr19:49908771-49908771|T/C|missense_variant	NUP62|p.D346G|1|0.28|ENSG00000213024|chr19:49908771-49908771|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	578.7960815429688	2	578.796529	1155.5785	0.6163	0.00035671	-0.54582	-0.00031592	0.070479	4.0793E-05	578.7961853686047	26.024	0.26102	26.024	25.875	26.136	0					6	4	2	0	0	0	0.29516	1	9413	9413		31.268	9.7314	1	3240800			25844	6404	16470	16557	24827	24827					0.006938779350093682
QERHFLQQA	9	Unmodified	_QERHFLQQA_					0	0	0		NUP62|p.D346G|1|0.28|ENSG00000213024|chr19:49908771-49908771|T/C|missense_variant;ENSG00000213024|ENST00000352066|NUP62	NUP62|p.D346G|1|0.28|ENSG00000213024|chr19:49908771-49908771|T/C|missense_variant	NUP62|p.D346G|1|0.28|ENSG00000213024|chr19:49908771-49908771|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	578.79638671875	2	578.796529	1155.5785	0.34743	0.00020109	-0.0011122	-6.4371E-07	0.34632	0.00020045	578.7964201741332	26.463	0.31092	26.102	25.921	26.232	-0.36164					10	5	3	0	0	0	0.032914	1	9601	9601		83.429	51.123	1	23492000			25845	6404	16470	16557	24828	24828					0.006938779350093682
QERHFLQQA	9	Unmodified	_QERHFLQQA_					0	0	0		NUP62|p.D346G|1|0.28|ENSG00000213024|chr19:49908771-49908771|T/C|missense_variant;ENSG00000213024|ENST00000352066|NUP62	NUP62|p.D346G|1|0.28|ENSG00000213024|chr19:49908771-49908771|T/C|missense_variant	NUP62|p.D346G|1|0.28|ENSG00000213024|chr19:49908771-49908771|T/C|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	578.796529	1155.5785	0.57539	0.00033303	0.061814	3.5778E-05	0.6372	0.00036881	578.796404163727	26.086	0.2087	25.958	25.807	26.016	-0.12795	-0.07005	0.00013763	NaN	83.429	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2352600			25846	6404	16470	16557							0.006938779350093682
QERIKKTELV	10	Unmodified	_QERIKKTELV_					0	0	0			REV__tr|U7SZW9|U7SZW9_FUSNUOrotidine5'-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrFPE=3SV=1	REV__tr|U7SZW9|U7SZW9_FUSNUOrotidine5'-phosphatedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrFPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	622.37353515625	2	622.372069	1242.72959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.392	1	39.315	38.815	39.815	-0.077835								0	0	0	0.92917	1	14824	14824		9.3831	0.63772	1		+		25847	17886	16471	16558	24829	24829					0.11793019522997383
QERKEKKAKV	10	Unmodified	_QERKEKKAKV_					0	0	0		nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	MSMS	HCT116MG_D190212_S4	4	415.0727844238281	3	415.254216	1242.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8187	1	9.6194	9.1194	10.119	-0.1993								0	0	0	0.97045	1	3010	3010		0.15932	0	1				25848	3502	16472	16559	24830	24830					0.12915841617109436
QERKEQVLP	9	Unmodified	_QERKEQVLP_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	MSMS	HCT116MG_D190212_S4	4	376.2113952636719	3	376.212017	1125.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.208	1	53.882	53.382	54.382	-0.32579								0	0	0	0.7696	1	20262	20262		1.1933	0.41681	1				25849	3399	16473	16560	24831	24831					0.056439153920109675
QERKMRRKRRM	11	Unmodified	_QERKMRRKRRM_					0	0	0		PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	PPP1R1B|p.N97Rfs*45|1|0.46|ENSG00000131771|chr17:39633928-39633931|TGAA/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	787.9539184570312	2	787.951369	1573.88819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.028	1	42.956	42.456	43.456	-0.072475								0	0	0	0.95636	1	16303	16303		2.9952	1.3426	1				25850	9771	16474	16561	24832	24832					0.12419711678603562
QERKNLIY	8	Unmodified	_QERKNLIY_					0	0	0		HELQ|p.F782Lfs*9|1|0.13|ENSG00000163312|chr4:83429696-83429696|A/-|frameshift_variant;HELQ|p.E864Gfs*7|1|0.07|ENSG00000163312|chr4:83427648-83427649|-/GC|frameshift_variant;ENSG00000163312|ENST00000295488|HELQ;HELQ|p.S348Y|1|0.14|ENSG00000163312|chr4:83448931-83448931|G/T|missense_variant;HELQ|p.K561Rfs*8|1|0.45|ENSG00000163312|chr4:83439989-83439989|T/-|frameshift_variant	HELQ|p.F782Lfs*9|1|0.13|ENSG00000163312|chr4:83429696-83429696|A/-|frameshift_variant	HELQ|p.F782Lfs*9|1|0.13|ENSG00000163312|chr4:83429696-83429696|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	532.2967529296875	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.832	1	36.531	36.031	37.031	-0.30113								0	0	0	0.8837	1	13623	13623		9.3474	2.0582	1				25851	4590	16475	16562	24833	24833					0.05340547708851773
QERLDDAQ	8	Unmodified	_QERLDDAQ_					0	0	0			REV__SNAPC4|p.G775D|1|0.33|ENSG00000165684|chr9:136381386-136381386|C/T|missense_variant	REV__SNAPC4|p.G775D|1|0.33|ENSG00000165684|chr9:136381386-136381386|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	488.2156677246094	2	487.73052	973.446488	0.024354	1.1878E-05	0.22497	0.00010973	0.24933	0.0001216	487.73058011221553	16.698	0.46829	16.782	16.6	17.068	0.084467					15	8	3	0	0	0	0.6854	1	5551	5551		24.674	1.5255	1	18181000	+		25852	17536	16476	16563	24834	24834					-0.04129771872624133
QERNSVSKK	9	Unmodified	_QERNSVSKK_					0	0	0		AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|9|2|sense;ENST00000515800.6_1_5:86667940-86686697:+|nuORF	AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|9|2|sense	AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|9|2|sense	MSMS	HCT116MG_D190212_S4	4	538.2964477539062	2	538.296362	1074.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.132	1	42.757	42.257	43.257	-0.37493								0	0	0	0.67173	1	15864	15864		20.454	4.6064	1				25853	104	16477	16564	24835	24835					0.0438645821514001
QERPSQAAP	9	Unmodified	_QERPSQAAP_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA;TXLNA|p.G94Afs*35|1|0.2|ENSG00000084652|chr1:32181348-32181348|G/-|frameshift_variant	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	HCT116MG_D190212_S3	3	492.2499084472656	2	492.24888	982.483208	0.043448	2.1387E-05	0.40078	0.00019728	0.44422	0.00021867	492.2490561507913	16.802	0.31228	16.886	16.756	17.068	0.084467					10	5	3	0	0	0	0.31596	1	5611	5611		29.082	0	1	4544400			25854	1448	16478	16565	24836	24836					-0.008734752560485504
QERPSQAAP	9	Unmodified	_QERPSQAAP_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA;TXLNA|p.G94Afs*35|1|0.2|ENSG00000084652|chr1:32181348-32181348|G/-|frameshift_variant	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	492.24888	982.483208	0.043448	2.1387E-05	0.40078	0.00019728	0.44422	0.00021867	492.2490561507913	16.802	0.31228	16.886	16.756	17.068	0.084467	0	0	NaN	29.082	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4544400			25855	1448	16478	16565							-0.008734752560485504
QERRKQQRQRS	11	Unmodified	_QERRKQQRQRS_					0	0	0			REV__NEK4|p.R537Q|1|0.22|ENSG00000114904|chr3:52746801-52746801|C/T|missense_variant	REV__NEK4|p.R537Q|1|0.22|ENSG00000114904|chr3:52746801-52746801|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	750.331787109375	2	750.416728	1498.8189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.133	1	15.133	14.633	15.633	0								0	0	0	0.96043	1	5006	5006		0.86438	0.55734	1		+		25856	17346	16479	16566	24837	24837					0.08944667255082095
QERRMLMRPKG	11	Unmodified	_QERRMLMRPKG_					0	0	0			REV__ENSG00000196862|ENST00000408999|RGPD4	REV__ENSG00000196862|ENST00000408999|RGPD4	MSMS	HCT116MG_D190212_S3	3	701.3846435546875	2	701.381923	1400.74929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.46	1	46.148	45.648	46.648	-0.31237								0	0	0	0.95343	1	17421	17421		4.5289	1.2476	1		+		25857	14049	16480	16567	24838	24838					0.06494748990439803
QESDEESRPQ	10	Unmodified	_QESDEESRPQ_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	HCT116MG_D190212_S2	2	603.7577514648438	2	602.757463	1203.50037	0.66357	0.00039997	-0.41421	-0.00024967	0.24937	0.00015031	602.7578575883616	21.156	0.57041	20.773	20.443	21.013	-0.38288					27	10	5	0	0	0	0.75066	1	7409	7409		16.149	0.90062	1	42166000			25858	2782	16481	16568	24839	24839					-0.09323644231540129
QESDSINNLQA	11	Unmodified	_QESDSINNLQA_					0	0	0		CDK5RAP2|p.N746Kfs*10|1|0.2|ENSG00000136861|chr9:120458587-120458588|-/T|frameshift_variant;CDK5RAP2|p.P1012Lfs*62|1|0.27|ENSG00000136861|chr9:120443733-120443733|G/-|frameshift_variant;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;CDK5RAP2|p.L1409*|1|0.2|ENSG00000136861|chr9:120415111-120415111|A/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2	CDK5RAP2|p.N746Kfs*10|1|0.2|ENSG00000136861|chr9:120458587-120458588|-/T|frameshift_variant	CDK5RAP2|p.N746Kfs*10|1|0.2|ENSG00000136861|chr9:120458587-120458588|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	609.7838745117188	2	609.783481	1217.55241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.171	1	32.885	32.385	33.385	-0.28511								0	0	0	0.28372	1	12171	12171		61.602	40.065	1				25859	392	16482	16569	24840	24840					-0.04766480817784213
QESDSSFLV	9	Unmodified	_QESDSSFLV_					0	0	0		ENSG00000101220|ENST00000379772|ADISSP;nc|ENSG00000101220|Q9GZN8-2|ADISSP	ENSG00000101220|ENST00000379772|ADISSP	ENSG00000101220|ENST00000379772|ADISSP	MULTI-MSMS	HCT116MG_D190212_S3	3	1011.4628295898438	1	1011.46293	1010.45566	0.62707	0.00063426	0.12493	0.00012636	0.752	0.00076062	1011.4626788767334	48.169	0.26077	47.853	47.775	48.036	-0.31596					5	4	2	0	0	0	0.030723	1	18145	18145		85.642	37.296	1	2909900			25860	1765	16483	16570	24841	24841					-0.04915423306943012
QESGFSHSA	9	Unmodified	_QESGFSHSA_					0	0	0		ENSG00000092377|ENST00000383032|TBL1Y;TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000092377|ENST00000383032|TBL1Y	ENSG00000092377|ENST00000383032|TBL1Y	MULTI-MSMS	HCT116MG_D190212_S1	1	475.20367431640625	2	475.204138	948.393724	0.14182	6.7394E-05	0.097945	4.6544E-05	0.23977	0.00011394	475.2040515328236	19.769	0.20921	19.769	19.652	19.861	0					5	3	2	0	0	0	0.016134	1	6892	6892		100.37	65.97	1	2945400			25861	1581	16484	16571	24842	24842					-0.08253729935427145
QESGFSHSA	9	Unmodified	_QESGFSHSA_					0	0	0		ENSG00000092377|ENST00000383032|TBL1Y;TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000092377|ENST00000383032|TBL1Y	ENSG00000092377|ENST00000383032|TBL1Y	MULTI-MSMS	HCT116MG_D190212_S2	2	475.2039794921875	2	475.204138	948.393724	0.17665	8.3946E-05	-0.031366	-1.4905E-05	0.14529	6.9041E-05	475.20407317049455	20.323	0.31725	19.943	19.813	20.13	-0.37949					11	5	3	0	0	0	0.031089	1	7107	7107		85.272	45.322	1	27985000			25862	1581	16484	16571	24843	24843					-0.08253729935427145
QESGFSHSA	9	Unmodified	_QESGFSHSA_					0	0	0		ENSG00000092377|ENST00000383032|TBL1Y;TBL1X|p.G268Afs*7|1|0.33|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant;ENSG00000177565|ENST00000457928|TBL1XR1;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	ENSG00000092377|ENST00000383032|TBL1Y	ENSG00000092377|ENST00000383032|TBL1Y	MULTI-MSMS	HCT116MG_D190212_S3	3	475.2039794921875	2	475.204138	948.393724	0.1868	8.8768E-05	-0.00062471	-2.9686E-07	0.18617	8.8471E-05	475.20397204560027	19.456	0.3126	19.516	19.386	19.698	0.05983					8	5	2	0	0	0	0.0057285	1	6699	6699		131.27	89.428	1	8497600			25863	1581	16484	16571	24844	24844					-0.08253729935427145
QESGFYWSA	9	Unmodified	_QESGFYWSA_					0	0	0		SOCS3|p.P131Lfs*48|1|0.38|ENSG00000184557|chr17:78358704-78358704|G/-|frameshift_variant;SOCS3|p.G100Afs*79|2|0.49|ENSG00000184557|chr17:78358797-78358797|C/-|frameshift_variant;ENSG00000184557|ENST00000330871|SOCS3	SOCS3|p.P131Lfs*48|1|0.38|ENSG00000184557|chr17:78358704-78358704|G/-|frameshift_variant	SOCS3|p.P131Lfs*48|1|0.38|ENSG00000184557|chr17:78358704-78358704|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1074.4530029296875	1	1074.4527	1073.44543	0.46621	0.00050092	-0.62074	-0.00066696	-0.15454	-0.00016604	1074.4522196294158	50.916	0.25785	50.738	50.604	50.862	-0.17868					9	4	3	0	0	0	0.0053819	1	19530	19530		134.3	84.363	1	22030000			25864	5775	16485	16572	24845	24845					-0.08835986241524552
QESGFYWSA	9	Unmodified	_QESGFYWSA_					0	0	0		SOCS3|p.P131Lfs*48|1|0.38|ENSG00000184557|chr17:78358704-78358704|G/-|frameshift_variant;SOCS3|p.G100Afs*79|2|0.49|ENSG00000184557|chr17:78358797-78358797|C/-|frameshift_variant;ENSG00000184557|ENST00000330871|SOCS3	SOCS3|p.P131Lfs*48|1|0.38|ENSG00000184557|chr17:78358704-78358704|G/-|frameshift_variant	SOCS3|p.P131Lfs*48|1|0.38|ENSG00000184557|chr17:78358704-78358704|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1074.4532470703125	1	1074.4527	1073.44543	0.44042	0.00047321	0.18616	0.00020002	0.62658	0.00067323	1074.4529565789692	51.038	0.31375	50.724	50.594	50.907	-0.31381					8	5	2	0	0	0	0.023938	1	19285	19285		92.491	50.652	1	4464600			25865	5775	16485	16572	24846	24846					-0.08835986241524552
QESKLIILA	9	Unmodified	_QESKLIILA_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S1	1	507.8134460449219	2	507.813325	1013.6121	0.38016	0.00019305	0.20032	0.00010172	0.58048	0.00029477	507.8133378480014	47.258	0.37876	47.258	47.062	47.441	0					16	7	3	0	0	0	0.0035381	1	17952	17952		171.09	67.733	1	59941000			25866	5303;4976	16486	16573	24847	24847					0.1058348665419544
QESKLIILA	9	Unmodified	_QESKLIILA_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	507.81341552734375	2	507.813325	1013.6121	0.51965	0.00026388	-0.1502	-7.6274E-05	0.36945	0.00018761	507.8131680164058	47.329	0.67292	47.207	46.974	47.647	-0.12175					33	12	5	0	0	0	0.0035381	1	18032	18032		171.09	67.733	1	594560000			25867	5303;4976	16486	16573	24848	24848					0.1058348665419544
QESKLIILA	9	Unmodified	_QESKLIILA_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	1014.61865234375	1	1014.61937	1013.6121	0.83347	0.00084565	-0.236	-0.00023945	0.59747	0.0006062	1014.6187687858451	47.356	0.25801	47.234	47.078	47.336	-0.12175					9	4	3	0	0	0	0.0045841	1	18056	18056		142.08	45.713	1	28069000			25868	5303;4976	16486	16573	24849	24849					0.1058348665419544
QESKLIILA	9	Unmodified	_QESKLIILA_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S3	3	507.8135070800781	2	507.813325	1013.6121	0.03655	1.8561E-05	0.3756	0.00019074	0.41215	0.0002093	507.81341055725	47.644	0.43711	47.329	47.13	47.567	-0.31525					21	8	4	0	0	0	0.049545	1	17868	17868		74.929	31.071	1	96835000			25869	5303;4976	16486	16573	24850	24850					0.1058348665419544
QESKLIILA	9	Unmodified	_QESKLIILA_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S4	4	507.81378173828125	2	507.813325	1013.6121	0.25674	0.00013037	0.081361	4.1316E-05	0.3381	0.00017169	507.813337095375	47.657	0.29742	47.288	47.171	47.468	-0.36907					23	9	4	0	0	0	0.0035381	1	17611	17611		171.09	67.733	1	38901000			25870	5303;4976	16486	16573	24851	24851					0.1058348665419544
QESLKRQNL	9	Unmodified	_QESLKRQNL_					0	0	0			REV__nc|ENSG00000114656|Q9ULG3-2|CFAP92	REV__nc|ENSG00000114656|Q9ULG3-2|CFAP92	MSMS	HCT116MG_D190212_S1	1	558.3140869140625	2	558.312012	1114.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.545	1	51.545	51.045	52.045	0								0	0	0	0.76718	1	19696	19696		10.824	0	1		+		25871	11514	16487	16574	24852	24852					0.05675031249234053
QESLSKSP	8	Unmodified	_QESLSKSP_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MSMS	HCT116MG_D190212_S2	2	438.22735595703125	2	438.227082	874.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.651	1	18.288	17.788	18.788	-0.36325								0	0	0	0.8396	1	6423	6423		19.439	4.8573	1		+		25872	11429	16488	16575	24853	24853					-0.0026308475319183344
QESPGGLEA	9	Unmodified	_QESPGGLEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S1	1	887.410888671875	1	887.410502	886.403226	0.92271	0.00081883	-0.37682	-0.00033439	0.54589	0.00048443	887.410068628151	28.242	0.31623	28.242	28.113	28.429	0					8	5	2	0	0	0	0.0057285	1	10305	10305		131.27	53.118	1	11189000			25873	2741	16489	16576	24854	24854					-0.04451961649886016
QESPGGLEA	9	Unmodified	_QESPGGLEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S2	2	887.4105224609375	1	887.410502	886.403226	0.79979	0.00070974	-0.062335	-5.5316E-05	0.73746	0.00065443	887.4102896934735	28.643	0.40925	28.313	28.081	28.49	-0.32987					15	7	3	0	0	0	0.0057285	1	10457	10457		131.27	53.118	1	90995000			25874	2741	16489	16576	24855	24855					-0.04451961649886016
QESPGGLEA	9	Unmodified	_QESPGGLEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S2	2	444.2088317871094	2	444.208889	886.403226	0.13289	5.903E-05	0.053227	2.3644E-05	0.18612	8.2674E-05	444.20865248378675	28.643	0.20429	28.313	28.184	28.389	-0.32987					6	3	2	0	0	0	0.16306	1	10487	10487		45.7	5.7423	1	20360000			25875	2741	16489	16576	24856	24856					-0.04451961649886016
QESPGGLEA	9	Unmodified	_QESPGGLEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S3	3	887.4110107421875	1	887.410502	886.403226	1.0447	0.00092708	-0.36395	-0.00032297	0.68075	0.0006041	887.4100946976519	28.669	0.62483	28.463	28.229	28.854	-0.20593					24	11	3	0	0	0	0.0044301	1	10365	10365		144.35	55.447	1	74070000			25876	2741	16489	16576	24857	24857					-0.04451961649886016
QESPGGLEA	9	Unmodified	_QESPGGLEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S3	3	444.2088928222656	2	444.208889	886.403226	0.35506	0.00015772	-0.13509	-6.0008E-05	0.21997	9.7713E-05	444.208719114791	28.669	0.41635	28.463	28.281	28.697	-0.20593					14	7	3	0	0	0	0.030723	1	10374	10374		85.642	30.868	1	18718000			25877	2741	16489	16576	24858	24858					-0.04451961649886016
QESPGGLEA	9	Unmodified	_QESPGGLEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S4	4	887.412353515625	1	887.410502	886.403226	0.74421	0.00066042	-0.010889	-9.6633E-06	0.73332	0.00065075	887.4104137452348	28.785	0.41529	28.444	28.263	28.678	-0.34059					12	7	2	0	0	0	0.0044301	1	10354	10354		144.35	55.447	1	20100000			25878	2741	16489	16576	24859	24859					-0.04451961649886016
QESPGGLEA	9	Unmodified	_QESPGGLEA_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S4	4	444.2088928222656	2	444.208889	886.403226	0.25155	0.00011174	-0.38009	-0.00016884	-0.12855	-5.7102E-05	444.2086035740337	28.769	0.41512	28.428	28.211	28.626	-0.34059					10	7	2	0	0	0	0.10244	1	10369	10369		57.722	2.9484	1	7346100			25879	2741	16489	16576	24860	24860					-0.04451961649886016
QESPGKVA	8	Unmodified	_QESPGKVA_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MSMS	HCT116MG_D190212_S2	2	408.21624755859375	2	408.216517	814.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.505	1	17.156	16.656	17.656	-0.34933								0	0	0	0.8837	1	5962	5962		11.64	0.81637	1				25880	1282	16490	16577	24861	24861					0.003849499379612098
QESPGKVAA	9	Unmodified	_QESPGKVAA_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	443.7351379394531	2	443.735074	885.455596	0.079738	3.5382E-05	-1.4254	-0.00063249	-1.3456	-0.0005971	443.7349539149749	18.219	0.31287	18.219	18.089	18.402	0					11	5	3	0	0	0	0.047849	1	6275	6275		75.761	23.492	1	11089000			25881	1282	16491	16578	24862	24862					0.008286214837198713
QESPGKVAA	9	Unmodified	_QESPGKVAA_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	443.7351989746094	2	443.735074	885.455596	-0.20521	-9.1061E-05	-1.1431	-0.00050725	-1.3484	-0.00059832	443.73517701530494	18.762	0.52068	18.399	18.217	18.738	-0.36325					14	9	2	0	0	0	0.020353	1	6451	6451		96.111	37.432	1	62346000			25882	1282	16491	16578	24863	24863					0.008286214837198713
QESPGKVAA	9	Unmodified	_QESPGKVAA_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	886.46337890625	1	886.462872	885.455596	0.44093	0.00039087	-1.7046	-0.001511	-1.2636	-0.0011201	886.4630649527413	18.768	0.31169	18.404	18.217	18.529	-0.36325					12	5	3	0	0	0	0.0038512	1	6469	6469		152.89	84.805	1	15586000			25883	1282	16491	16578	24864	24864					0.008286214837198713
QESPGKVAA	9	Unmodified	_QESPGKVAA_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	443.7350769042969	2	443.735074	885.455596	-0.082293	-3.6516E-05	-0.53387	-0.0002369	-0.61617	-0.00027341	443.73513757123504	17.847	0.46819	17.929	17.742	18.21	0.081356					16	8	3	0	0	0	0.030723	1	6023	6023		85.642	26.963	1	23153000			25884	1282	16491	16578	24865	24865					0.008286214837198713
QESPGKVAA	9	Unmodified	_QESPGKVAA_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	886.4624633789062	1	886.462872	885.455596	0.57972	0.0005139	-1.6467	-0.0014597	-1.0669	-0.0009458	886.4624229288124	17.859	0.20829	17.941	17.794	18.002	0.081358					5	3	2	0	0	0	0.0096523	1	6050	6050		114.2	55.523	1	2205500			25885	1282	16491	16578	24866	24866					0.008286214837198713
QESPGKVAA	9	Unmodified	_QESPGKVAA_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MSMS	HCT116MG_D190212_S4	4	443.73492431640625	2	443.735074	885.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.13	1	17.955	17.455	18.455	-0.17501								0	0	0	0.16454	1	6064	6064		49.933	9.9757	1				25886	1282	16491	16578	24867	24867					0.008286214837198713
QESPIMAKP	9	Unmodified	_QESPIMAKP_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	HCT116MG_D190212_S1	1	500.75982666015625	2	500.760235	999.505917	0.4711	0.00023591	0.085473	4.2801E-05	0.55657	0.00027871	500.7602353752586	29.555	0.5724	29.555	29.216	29.789	0					16	10	2	0	0	0	0.0034469	1	10775	10775		179.17	139.22	1	10852000			25887	6550	16492	16579	24868	24868					0.006144078172155787
QESPIMAKP	9	Unmodified	_QESPIMAKP_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7607116699219	2	500.760235	999.505917	0.22475	0.00011254	0.2818	0.00014111	0.50654	0.00025366	500.7602714579316	29.977	0.77435	29.693	29.254	30.028	-0.28453					31	14	3	0	0	0	0.0029864	1	10942	10942		181.69	141.73	1	95067000			25888	6550	16492	16579	24869	24869					0.006144078172155787
QESPIMAKP	9	Unmodified	_QESPIMAKP_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	HCT116MG_D190212_S3	3	500.760498046875	2	500.760235	999.505917	0.58122	0.00029105	-0.38986	-0.00019523	0.19136	9.5825E-05	500.7600221856229	30.041	0.78054	29.802	29.342	30.122	-0.23894					37	14	4	0	0	0	0.00046881	1	10837	10837		195.45	143.18	1	47181000			25889	6550	16492	16579	24870	24870					0.006144078172155787
QESPIMAKP	9	Unmodified	_QESPIMAKP_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	HCT116MG_D190212_S4	4	500.76092529296875	2	500.760235	999.505917	0.34144	0.00017098	-0.013819	-6.9198E-06	0.32763	0.00016406	500.76016058591745	30.231	0.58792	29.874	29.441	30.029	-0.3571					21	11	3	0	0	0	0.0036431	1	10878	10878		155.95	116	1	16393000			25890	6550	16492	16579	24871	24871					0.006144078172155787
QESPIMAKP	9	Oxidation (M)	_QESPIM(Oxidation (M))AKP_		QESPIM(1)AKP		QESPIM(130)AKP	0	0	1		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7579040527344	2	508.757692	1015.50083	0.42436	0.0002159	-0.51493	-0.00026198	-0.090575	-4.6081E-05	508.75759017293814	25.252	0.67638	24.876	24.452	25.129	-0.37521					21	12	2	0	0	0	0.0059958	1	9041	9041		128.93	62.476	1	13831000			25891	6550	16492	16580	24872	24872		138			-0.006298960453932523
QESPIMAKP	9	Oxidation (M)	_QESPIM(Oxidation (M))AKP_		QESPIM(1)AKP		QESPIM(60)AKP	0	0	1		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	HCT116MG_D190212_S4	4	508.7569580078125	2	508.757692	1015.50083	0.3477	0.0001769	-0.33879	-0.00017236	0.0089142	4.5351E-06	508.7574443051283	25.03	0.62377	24.75	24.434	25.058	-0.27958					19	11	2	0	0	0	0.090581	1	8823	8823		60.074	22.1	1	3279900			25892	6550	16492	16580	24873	24873		138			-0.006298960453932523
QESPINVTT	9	Unmodified	_QESPINVTT_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MULTI-SECPEP	HCT116MG_D190212_S1	1	494.2770080566406	2	494.750921	987.48729	0.34442	0.0001704	0.13201	6.5313E-05	0.47643	0.00023571	494.7507111478069	33.819	0.20883	33.819	33.711	33.919	0					6	3	2	0	0	0	0.064698	1	12529	12529		51.63	9.6743	1	2982500			25893	1122	16493	16581	24874	24874					-0.006954305530030069
QESPINVTT	9	Unmodified	_QESPINVTT_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MULTI-MSMS	HCT116MG_D190212_S2	2	988.493896484375	1	988.494566	987.48729	0.76869	0.00075985	-0.30611	-0.00030259	0.46258	0.00045725	988.4943157953384	34.066	0.25891	33.89	33.709	33.967	-0.17512					7	4	2	0	0	0	0.0055242	1	12657	12657		133.05	51.162	1	18147000			25894	1122	16493	16581	24875	24875					-0.006954305530030069
QESPINVTT	9	Unmodified	_QESPINVTT_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7511291503906	2	494.750921	987.48729	0.2578	0.00012755	-0.19407	-9.6015E-05	0.063734	3.1532E-05	494.7508335395466	34.046	0.25891	33.871	33.709	33.967	-0.17511					8	4	2	0	0	0	0.016701	1	12672	12672		99.799	47.531	1	16855000			25895	1122	16493	16581	24876	24876					-0.006954305530030069
QESPINVTT	9	Unmodified	_QESPINVTT_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MULTI-MSMS	HCT116MG_D190212_S3	3	494.7509460449219	2	494.750921	987.48729	0.29446	0.00014568	0.12013	5.9434E-05	0.41458	0.00020512	494.75086946832175	34.178	0.52052	33.884	33.611	34.131	-0.29419					21	9	3	0	0	0	0.010834	1	12558	12558		111.29	37.087	1	24183000			25896	1122	16493	16581	24877	24877					-0.006954305530030069
QESPINVTT	9	Unmodified	_QESPINVTT_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MULTI-MSMS	HCT116MG_D190212_S3	3	988.49609375	1	988.494566	987.48729	0.76501	0.00075621	-0.059952	-5.9262E-05	0.70506	0.00069695	988.4945678495586	34.192	0.41649	33.897	33.663	34.079	-0.29419					13	7	2	0	0	0	0.0050238	1	12563	12563		137.42	52.152	1	12105000			25897	1122	16493	16581	24878	24878					-0.006954305530030069
QESPINVTT	9	Unmodified	_QESPINVTT_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MULTI-MSMS	HCT116MG_D190212_S4	4	988.4954833984375	1	988.494566	987.48729	0.60559	0.00059862	0.21478	0.00021231	0.82037	0.00081093	988.4948075805277	34.239	0.25966	33.854	33.724	33.984	-0.38558					8	4	2	0	0	0	0.0068427	1	12501	12501		121.53	39.644	1	6262300			25898	1122	16493	16581	24879	24879					-0.006954305530030069
QESQDLRATA	10	Unmodified	_QESQDLRATA_					0	0	0		nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	559.7755737304688	2	559.775459	1117.53637	0.28769	0.00016104	-0.37123	-0.0002078	-0.083539	-4.6763E-05	559.7751676787753	21.63	0.20761	21.245	21.115	21.323	-0.38503					5	3	2	0	0	0	0.34996	1	7653	7653		46.022	5.2974	1	10358000			25899	3502	16494	16582	24880	24880					-0.017701422640357123
QESQDLRATA	10	Unmodified	_QESQDLRATA_					0	0	0		nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	nc|ENSG00000137804|Q9BXS6-7|NUSAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	559.7748413085938	2	559.775459	1117.53637	0.25178	0.00014094	-0.24029	-0.00013451	0.01149	6.4316E-06	559.7752185820608	21.122	0.26019	21.157	21.027	21.287	0.034473					6	4	2	0	0	0	0.060266	1	7361	7361		81.915	22.547	1	5972800			25900	3502	16494	16582	24881	24881					-0.017701422640357123
QESVSLMT	8	Unmodified	_QESVSLMT_					0	0	0			REV__ENSG00000268235|ENST00000622971|TCP11X1	REV__ENSG00000268235|ENST00000622971|TCP11X1	MULTI-MSMS	HCT116MG_D190212_S2	2	894.4248046875	1	894.42371	893.416433	1.1216	0.0010032	0.44677	0.0003996	1.5684	0.0014028	894.4238959365756	48.795	0.304	48.652	48.49	48.794	-0.1437					8	5	2	0	0	0	0.46267	1	18661	18661		44.407	3.9584	1	75912000	+		25901	14277	16495	16583	24882	24882					-0.03453846862157661
QETAIDGTAV	10	Unmodified	_QETAIDGTAV_					0	0	0			REV__nc|ENSG00000173200|Q460N3-2|PARP15	REV__nc|ENSG00000173200|Q460N3-2|PARP15	MULTI-MSMS	HCT116MG_D190212_S3	3	502.74871826171875	2	502.748379	1003.4822	0.38681	0.00019447	0.061166	3.0751E-05	0.44797	0.00022522	502.74841291370666	21.649	0.31594	21.668	21.535	21.851	0.018446					7	5	2	0	0	0	0.71349	1	7559	7559		19.257	3.4098	1	5152100	+		25902	13422	16496	16584	24883	24883					-0.019397344156004692
QETCDLHDP	9	Unmodified	_QETCDLHDP_					0	0	0			REV__ENSG00000101871|ENST00000317552|MID1	REV__ENSG00000101871|ENST00000317552|MID1	MULTI-MSMS	HCT116MG_D190212_S3	3	529.74853515625	2	529.216388	1056.41822	0.43114	0.00022817	0.052725	2.7903E-05	0.48387	0.00025607	529.2163106161571	23.597	0.99012	23.557	23.135	24.125	-0.03968					30	18	2	0	0	0	0.45867	1	8317	8317		19.257	1.1106	1	7599300	+		25903	11136	16497	16585	24884	24884					-0.10772837844206151
QETGFNRHEA	10	Unmodified	_QETGFNRHEA_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MSMS	HCT116MG_D190212_S1	1	594.7731323242188	2	594.773251	1187.53195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.596	1	18.596	18.096	19.096	0								0	0	0	0.89486	1	6401	6401		16.566	5.0712	1				25904	6308	16498	16586	24885	24885					-0.05431606686943269
QETGFNRHEA	10	Unmodified	_QETGFNRHEA_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;PJA2|p.D450Rfs*6|1|0.16|ENSG00000198961|chr5:109368682-109368683|-/T|frameshift_variant	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S2	2	594.77392578125	2	594.773251	1187.53195	0.61899	0.00036816	-0.05805	-3.4527E-05	0.56094	0.00033363	594.773208899878	19.179	0.46878	18.81	18.68	19.148	-0.3695					9	8	2	0	0	0	0.0052575	1	6650	6650		166.77	114.5	1	26387000			25905	6308	16498	16586	24886	24886					-0.05431606686943269
QETKSTVAV	9	Unmodified	_QETKSTVAV_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	481.7614440917969	2	481.761289	961.508025	0.16368	7.8852E-05	0.030384	1.4638E-05	0.19406	9.349E-05	481.76117818488177	22.767	0.26071	22.767	22.637	22.898	0					9	4	3	0	0	0	0.0080847	1	8089	8089		118.07	52.833	1	10800000			25906	1619	16499	16587	24887	24887					0.02573159826670235
QETKSTVAV	9	Unmodified	_QETKSTVAV_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	481.7614440917969	2	481.761289	961.508025	0.13103	6.3124E-05	0.12066	5.8129E-05	0.25169	0.00012125	481.76134626052715	23.294	0.36322	22.908	22.726	23.089	-0.3852					12	6	3	0	0	0	0.0035183	1	8297	8297		157.8	92.56	1	81387000			25907	1619	16499	16587	24888	24888					0.02573159826670235
QETKSTVAV	9	Unmodified	_QETKSTVAV_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	481.76123046875	2	481.761289	961.508025	0.14363	6.9197E-05	0.023659	1.1398E-05	0.16729	8.0595E-05	481.76126065071287	22.64	0.26028	22.621	22.439	22.699	-0.018869					11	4	3	0	0	0	0.0080847	1	7937	7937		118.07	52.833	1	25085000			25908	1619	16499	16587	24889	24889					0.02573159826670235
QETKSTVAV	9	Unmodified	_QETKSTVAV_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	481.76190185546875	2	481.761289	961.508025	0.074072	3.5685E-05	0.40083	0.0001931	0.4749	0.00022879	481.76144907797436	22.919	0.31293	22.681	22.55	22.863	-0.23758					8	5	2	0	0	0	0.023778	1	8007	8007		92.653	27.418	1	5094400			25909	1619	16499	16587	24890	24890					0.02573159826670235
QETLKQEW	8	Unmodified	_QETLKQEW_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.5650024414062	2	531.266739	1060.51892	0.14489	7.6974E-05	-0.7094	-0.00037688	-0.56451	-0.00029991	531.266392757392	30.375	0.20534	30.09	29.976	30.182	-0.28453					5	3	2	0	0	0	0.28869	1	11136	11136		24.674	0	1	19506000	+		25910	10997	16500	16588	24891	24891					-0.008914377990549838
QETLTNISA	9	Unmodified	_QETLTNISA_					0	0	0		ENST00000595279.1_1_19:3959101-3961233:-|nuORF;nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	488.75091552734375	2	488.750921	975.48729	-0.02104	-1.0283E-05	0.54717	0.00026743	0.52613	0.00025715	488.75088959475937	36.592	0.4163	36.291	35.989	36.405	-0.30113					10	7	2	0	0	0	0.020353	1	13547	13547		96.111	28.03	1	7891700			25911	4944	16501	16589	24892	24892					-0.0014343055300969354
QETLTNISA	9	Unmodified	_QETLTNISA_					0	0	0		ENST00000595279.1_1_19:3959101-3961233:-|nuORF;nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	488.7506408691406	2	488.750921	975.48729	-0.0049263	-2.4077E-06	0.2043	9.9852E-05	0.19937	9.7444E-05	488.7509284391072	36.69	0.20517	36.305	36.178	36.383	-0.38486					8	3	3	0	0	0	0.32978	1	13452	13452		27.629	6.0918	1	3053300			25912	4944	16501	16589	24893	24893					-0.0014343055300969354
QETLTNISA	9	Unmodified	_QETLTNISA_					0	0	0		ENST00000595279.1_1_19:3959101-3961233:-|nuORF;nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENST00000595279.1_1_19:3959101-3961233:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	488.750921	975.48729	0.37488	0.00018322	-0.20691	-0.00010113	0.16798	8.2099E-05	488.75080808453436	36.433	0.46613	36.305	36.122	36.589	-0.12799	0.0041535	-0.00034652	NaN	96.111	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14777000			25913	4944	16501	16589							-0.0014343055300969354
QETNGINMAY	10	Unmodified	_QETNGINMAY_					0	0	0			REV__ENST00000544547.5_1_2:109302217-109302484:+|nuORF	REV__ENST00000544547.5_1_2:109302217-109302484:+|nuORF	MSMS	HCT116MG_D190212_S2	2	570.7573852539062	2	570.753138	1139.49172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.179	1	26.826	26.326	27.326	-0.35254								0	0	0	0.89062	1	9861	9861		17.113	0	1		+		25914	16388	16502	16590	24894	24894					-0.07244289401751303
QETNKTIAA	9	Unmodified	_QETNKTIAA_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	488.25946044921875	2	488.258914	974.503274	0.14818	7.2348E-05	0.094596	4.6187E-05	0.24277	0.00011854	488.25906929898116	20.062	0.31171	19.687	19.558	19.869	-0.37503					12	5	3	0	0	0	0.026272	1	7001	7001		90.135	35.361	1	14592000			25915	5173	16503	16591	24895	24895					0.015002756838953246
QETNKTIAA	9	Unmodified	_QETNKTIAA_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	488.25897216796875	2	488.258914	974.503274	0.10251	5.0051E-05	0.34251	0.00016723	0.44502	0.00021728	488.2590494454601	19.147	0.31197	19.216	19.135	19.447	0.069157					11	5	3	0	0	0	0.12994	1	6572	6572		52.268	18.166	1	6819900			25916	5173	16503	16591	24896	24896					0.015002756838953246
QETNKTIAA	9	Unmodified	_QETNKTIAA_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	488.258914	974.503274	0.1616	7.8901E-05	0.46818	0.00022859	0.62978	0.00030749	488.2591599585715	19.521	0.20834	19.521	19.391	19.6	0	0.046495	0.00018521	NaN	90.135	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1709100			25917	5173	16503	16591							0.015002756838953246
QETPLHLVA	9	Unmodified	_QETPLHLVA_					0	0	0		ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	ANKFY1|p.P691Rfs*61|1|0.4|ENSG00000185722|chr17:4182230-4182230|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	504.2798767089844	2	504.279649	1006.54475	0.42445	0.00021404	0.70437	0.0003552	1.1288	0.00056924	504.27998198710196	42.526	0.57346	42.222	41.883	42.457	-0.30352					18	10	2	0	0	0	0.063511	1	15859	15859		68.081	30.107	1	4996200			25918	131	16504	16592	24897	24897					0.04173456443231771
QETSEMRSA	9	Unmodified	_QETSEMRSA_					0	0	0		MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant;ENSG00000089693|ENST00000203630|MLF2	MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant	MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	519.7299194335938	2	519.729663	1037.44477	0.59214	0.00030775	-0.48409	-0.0002516	0.10804	5.6152E-05	519.7293428612857	17.646	0.15629	17.646	17.568	17.724	0					6	2	3	0	0	0	0.34508	2	6046	5992;6046		26.021	12.115	1	3978300			25919	1531	16505	16593	24898;24899	24899					-0.07245148952870295
QETSEMRSA	9	Unmodified	_QETSEMRSA_					0	0	0		MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant;ENSG00000089693|ENST00000203630|MLF2	MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant	MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7296752929688	2	519.729663	1037.44477	0.18615	9.675E-05	0.15252	7.927E-05	0.33868	0.00017602	519.7296413614565	18.136	0.36548	17.78	17.65	18.015	-0.35647					13	6	3	0	0	0	0.051033	1	6237	6237		74.2	18.023	1	31981000			25920	1531	16505	16593	24900	24900					-0.07245148952870295
QETSEMRSA	9	Unmodified	_QETSEMRSA_					0	0	0		MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant;ENSG00000089693|ENST00000203630|MLF2	MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant	MLF2|p.D159Gfs*28|1|0.28|ENSG00000089693|chr12:6749931-6749932|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	519.729736328125	2	519.729663	1037.44477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.233	1	17.317	16.817	17.817	0.084467								0	0	0	0.71946	1	5775	5775		18.146	5.6148	1				25921	1531	16505	16593	24901	24901					-0.07245148952870295
QETSFTKEA	9	Unmodified	_QETSFTKEA_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	520.7485961914062	2	520.748379	1039.4822	0.53448	0.00027833	-0.040498	-2.1089E-05	0.49398	0.00025724	520.7482823073367	24.021	0.46782	23.637	23.351	23.819	-0.38324					19	8	4	0	0	0	0.0068642	1	8591	8591		121.35	58.773	1	101780000			25922	3226	16506	16594	24902	24902					-0.03595734415603147
QETSFTKEA	9	Unmodified	_QETSFTKEA_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	1040.4912109375	1	1040.48948	1039.4822	0.95449	0.00099314	0.64434	0.00067043	1.5988	0.0016636	1040.4902424781574	24.021	0.20732	23.637	23.508	23.715	-0.38324					5	3	2	0	0	0	0.0035707	1	8619	8619		174.48	115.8	1	8508600			25923	3226	16506	16594	24903	24903					-0.03595734415603147
QETSFTKEA	9	Unmodified	_QETSFTKEA_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S3	3	520.7486572265625	2	520.748379	1039.4822	0.31063	0.00016176	0.10552	5.4951E-05	0.41615	0.00021671	520.7483304397239	23.527	0.52109	23.487	23.239	23.76	-0.039682					22	9	4	0	0	0	0.012531	2	8308	8308;8380		107.1	44.527	1	68682000			25924	3226	16506	16594	24904;24905	24904					-0.03595734415603147
QETSFTKEA	9	Unmodified	_QETSFTKEA_					0	0	0		nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF	nc|ENSG00000133112|P13693-2|TPT1	nc|ENSG00000133112|P13693-2|TPT1	MULTI-MSMS	HCT116MG_D190212_S4	4	520.748291015625	2	520.748379	1039.4822	0.33511	0.00017451	0.0093276	4.8574E-06	0.34444	0.00017937	520.748285139143	23.805	0.31199	23.547	23.417	23.729	-0.25816					16	5	4	0	0	0	0.02327	1	8355	8355		93.166	40.898	1	25167000			25925	3226	16506	16594	24906	24906					-0.03595734415603147
QEVAGSTSA	9	Unmodified	_QEVAGSTSA_					0	0	0		ENST00000474140.1_1_1:3809311-3816771:-|nuORF;ENSG00000198912|ENST00000361605|C1orf174;ENST00000486765.5_1_1:3806526-3811957:-|nuORF	ENST00000474140.1_1_1:3809311-3816771:-|nuORF	ENST00000474140.1_1_1:3809311-3816771:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	849.3953857421875	1	849.394852	848.387576	0.73678	0.00062582	-0.33281	-0.00028269	0.40397	0.00034313	849.394510385979	17.598	0.20877	17.244	17.13	17.338	-0.3542					5	3	2	0	0	0	0.0048275	1	6019	6019		139.14	42.854	1	4343700			25926	6298	16507	16595	24907	24907					-0.04268248166954436
QEVAGSTSA	9	Unmodified	_QEVAGSTSA_					0	0	0		ENST00000474140.1_1_1:3809311-3816771:-|nuORF;ENSG00000198912|ENST00000361605|C1orf174;ENST00000486765.5_1_1:3806526-3811957:-|nuORF	ENST00000474140.1_1_1:3809311-3816771:-|nuORF	ENST00000474140.1_1_1:3809311-3816771:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	849.394852	848.387576	0.52214	0.0004435	0.0042392	3.6007E-06	0.52638	0.0004471	849.3951803347624	17.062	0.15618	17.146	17.068	17.225	0.084467	-0.048517	0.00022714	NaN	139.14	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1461700			25927	6298	16507	16595							-0.04268248166954436
QEVDFFQRY	9	Unmodified	_QEVDFFQRY_					0	0	0		ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	HCT116MG_D190212_S2	2	616.1331787109375	2	616.290745	1230.56694	0.54472	0.0003357	0.2684	0.00016542	0.81312	0.00050112	616.2900780181318	48.608	0.25312	48.464	48.338	48.591	-0.1437					5	4	2	0	0	0	0.0038833	1	18569	18569		152.41	59.759	1	38074000			25928	4050	16508	16596	24908	24908					-0.03912363878976066
QEVDHHWQA	9	Unmodified	_QEVDHHWQA_					0	0	0		ENSG00000114738|ENST00000621469|MAPKAPK3	ENSG00000114738|ENST00000621469|MAPKAPK3	ENSG00000114738|ENST00000621469|MAPKAPK3	MULTI-SECPEP	HCT116MG_D190212_S2	2	575.7456665039062	2	575.257237	1148.49992	0.56975	0.00032776	-0.11659	-6.7072E-05	0.45316	0.00026068	575.2570566073931	24.26	0.15637	23.88	23.77	23.926	-0.38003					4	2	2	0	0	0	0.0050466	1	8684	8684		133.05	102.42	1	16401000			25929	2430	16509	16597	24909	24909					-0.06838974370111828
QEVDHHWQA	9	Unmodified	_QEVDHHWQA_					0	0	0		ENSG00000114738|ENST00000621469|MAPKAPK3	ENSG00000114738|ENST00000621469|MAPKAPK3	ENSG00000114738|ENST00000621469|MAPKAPK3	MULTI-MSMS	HCT116MG_D190212_S3	3	575.2570190429688	2	575.257237	1148.49992	0.44699	0.00025714	-0.35922	-0.00020664	0.08777	5.049E-05	575.2569558439332	23.67	0.20832	23.63	23.5	23.708	-0.03968					5	3	2	0	0	0	0.05892	1	8393	8393		70.332	52.889	1	4321100			25930	2430	16509	16597	24910	24910					-0.06838974370111828
QEVDRIKEA	9	Unmodified	_QEVDRIKEA_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;ENST00000482151.1_2:149856814-149868187:+|nuORF;nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.7700805664062	2	544.290745	1086.56694	0.4678	0.00025462	-0.59626	-0.00032454	-0.12846	-6.9921E-05	544.2905894419418	21.118	0.46683	20.735	20.546	21.013	-0.38288					13	8	3	0	0	0	0.021977	1	7400	7400		114.5	45.158	1	32586000			25931	5152;4270	16510	16598	24911	24911					0.027116361210119067
QEVDRIKEA	9	Unmodified	_QEVDRIKEA_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;ENST00000482151.1_2:149856814-149868187:+|nuORF;nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S3	3	544.2909545898438	2	544.290745	1086.56694	0.33964	0.00018486	0.04121	2.243E-05	0.38085	0.00020729	544.2908080978535	20.341	0.26031	20.389	20.259	20.52	0.048107					11	4	3	0	0	0	0.004234	1	7041	7041		147.24	65.325	1	17410000			25932	5152;4270	16510	16598	24912	24912					0.027116361210119067
QEVDRIKEA	9	Unmodified	_QEVDRIKEA_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;ENST00000482151.1_2:149856814-149868187:+|nuORF;nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S3	3	363.1960754394531	3	363.196256	1086.56694	-0.19659	-7.1399E-05	-0.30701	-0.0001115	-0.50359	-0.0001829	363.1960876693715	20.355	0.26031	20.403	20.259	20.52	0.048107					9	4	3	0	0	0	0.22946	1	7053	7053		35.612	10.655	1	8394800			25933	5152;4270	16510	16598	24913	24913					0.027116361210119067
QEVDRIKEA	9	Unmodified	_QEVDRIKEA_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;ENST00000482151.1_2:149856814-149868187:+|nuORF;nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S4	4	544.291015625	2	544.290745	1086.56694	0.51615	0.00028094	0.0018155	9.8817E-07	0.51797	0.00028193	544.2905987674733	20.736	0.25982	20.526	20.344	20.604	-0.20959					7	4	2	0	0	0	0.00446	1	7118	7118		143.91	46.974	1	4944500			25934	5152;4270	16510	16598	24914	24914					0.027116361210119067
QEVDRIVTQ	9	Unmodified	_QEVDRIVTQ_					0	0	0			REV__MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant	REV__MCM6|p.K365Nfs*6|1|0.23|ENSG00000076003|chr2:135862732-135862732|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	544.2908325195312	2	544.290745	1086.56694	0.4678	0.00025462	-0.59626	-0.00032454	-0.12846	-6.9921E-05	544.2905894419418	21.118	0.46683	20.735	20.546	21.013	-0.38288					13	8	3	0	0	0	0.37942	1	7434	7434		23.79	0	1	32586000	+		25935	10816	16511	16599	24915	24915					0.027116361210119067
QEVEKVQPP	9	Unmodified	_QEVEKVQPP_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MSMS	HCT116MG_D190212_S3	3	527.2827758789062	2	527.282389	1052.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.459	1	26.31	25.81	26.81	-0.14924								0	0	0	9.1832E-05	1	9493	9493		137.42	83.591	1				25936	927	16512	16600	24916	24916					0.026051352350577872
QEVERNVEA	9	Unmodified	_QEVERNVEA_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;TRIM37|p.P935Rfs*15|1|0.29|ENSG00000108395|chr17:59001606-59001606|G/-|frameshift_variant;ENSG00000108395|ENST00000262294|TRIM37;TRIM37|p.R172I|1|0.35|ENSG00000108395|chr17:59079855-59079855|C/A|missense_variant	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MSMS	HCT116MG_D190212_S2	2	537.264892578125	2	537.264727	1072.5149	0.44723	0.00024028	0.21497	0.0001155	0.6622	0.00035578	537.2648324360688	20.536	0.21338	20.157	20.023	20.236	-0.37949					8	3	3	0	0	0	0.43775	1	7195	7195		20.454	0	1	17419000			25937	2158	16513	16601	24917	24917					-0.018455272927440092
QEVERNVEA	9	Unmodified	_QEVERNVEA_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;TRIM37|p.P935Rfs*15|1|0.29|ENSG00000108395|chr17:59001606-59001606|G/-|frameshift_variant;ENSG00000108395|ENST00000262294|TRIM37;TRIM37|p.R172I|1|0.35|ENSG00000108395|chr17:59079855-59079855|C/A|missense_variant	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MSMS	HCT116MG_D190212_S3	3	537.2650146484375	2	537.264727	1072.5149	0.42797	0.00022993	0.16771	9.0107E-05	0.59568	0.00032004	537.2649488240887	19.873	0.2606	19.921	19.791	20.051	0.048107					7	4	2	0	0	0	0.00446	1	6841	6841		143.91	76.071	1	9566400			25938	2158	16513	16601	24918	24918					-0.018455272927440092
QEVETSVTY	9	Unmodified	_QEVETSVTY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	528.24853515625	2	528.248212	1054.48187	0.3216	0.00016988	-0.055605	-2.9373E-05	0.26599	0.00014051	528.2480263076121	32.613	0.3651	32.613	32.326	32.691	0					9	6	2	0	0	0	0.016744	1	12056	12056		99.755	38.398	1	11595000			25939	1867	16514	16602	24919	24919					-0.04319154135464487
QEVETSVTY	9	Unmodified	_QEVETSVTY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1056.486328125	1	1055.48915	1054.48187	0.70152	0.00074045	-1.9821	-0.0020921	-1.2806	-0.0013517	1055.4887594823058	32.771	0.36316	32.56	32.325	32.688	-0.21135					16	6	4	0	0	0	0.063511	2	12147	12132;12147		68.081	35.775	1	49991000			25940	1867	16514	16602	24920;24921	24921					-0.04319154135464487
QEVETSVTY	9	Unmodified	_QEVETSVTY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	528.7476806640625	2	528.248212	1054.48187	0.64471	0.00034057	0.0029686	1.5682E-06	0.64768	0.00034214	528.2482922856599	32.993	0.41003	32.708	32.352	32.762	-0.28511					23	10	3	0	0	0	0.0077497	2	12093	12093;12119		118.89	65.062	1	33490000			25941	1867	16514	16602	24922;24923	24922					-0.04319154135464487
QEVETSVTY	9	Unmodified	_QEVETSVTY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1055.48915	1054.48187	0.85822	0.00090584	-4.1508	-0.0043811	-3.2926	-0.0034753	1056.486410826946	32.948	0.31858	32.663	32.404	32.722	-0.28511	0.051484	-0.0013813	NaN	68.081	16	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12602000			25942	1867	16514	16602							-0.04319154135464487
QEVIITKF	8	Unmodified	_QEVIITKF_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S1	1	489.2867126464844	2	489.286943	976.559333	0.17564	8.5939E-05	0.22533	0.00011025	0.40097	0.00019619	489.28695985741973	44.33	0.26949	44.33	44.141	44.41	0					9	4	3	0	0	0	0.0087514	1	16774	16774		165.72	55.046	1	19030000			25943	1258	16515	16603	24924	24924					0.07011528591374372
QEVIITKF	8	Unmodified	_QEVIITKF_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-MSMS	HCT116MG_D190212_S2	2	489.28680419921875	2	489.286943	976.559333	0.1094	5.3529E-05	-0.24846	-0.00012157	-0.13906	-6.8041E-05	489.286741544138	44.272	0.41631	44.193	44.019	44.435	-0.078373					14	7	3	0	0	0	0.024686	1	16825	16825		209.87	64.741	1	42527000			25944	1258	16515	16603	24925	24925					0.07011528591374372
QEVLLLLVL	9	Unmodified	_QEVLLLLVL_					0	0	0		ENST00000443374.6_1_10:52389585-52389780:+|nuORF	ENST00000443374.6_1_10:52389585-52389780:+|nuORF	ENST00000443374.6_1_10:52389585-52389780:+|nuORF	MSMS	HCT116MG_D190212_S2	2	520.3402709960938	2	520.341718	1038.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.095	1	58.93	58.43	59.43	-0.1653								0	0	0	0.76973	1	22853	22853		1.8442	0	1				25945	7937	16516	16604	24926	24926					0.15109534210705533
QEVLQAVA	8	Unmodified	_QEVLQAVA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	857.4725952148438	1	857.472709	856.465432	0.49185	0.00042175	0.095477	8.1869E-05	0.58733	0.00050362	857.4728006126192	38.272	0.19495	37.889	37.76	37.955	-0.38283					5	3	2	0	0	0	0.15965	1	14031	14031		81.613	20.256	1	2131900			25946	3119	16517	16605	24927	24927					0.03145809489080875
QEVNFQEY	8	Unmodified	_QEVNFQEY_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	HCT116MG_D190212_S1	1	528.7359008789062	2	528.735271	1055.45599	0.13289	7.0264E-05	0.031312	1.6556E-05	0.1642	8.682E-05	528.7352209125222	39.787	0.41592	39.787	39.605	40.021	0					16	7	3	0	0	0	0.033555	1	14928	14928		141.83	67.404	1	57982000			25947	6189	16518	16606	24928	24928					-0.06952003587070976
QEVNFQEY	8	Unmodified	_QEVNFQEY_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	HCT116MG_D190212_S1	1	1056.4639892578125	1	1056.46327	1055.45599	0.58879	0.00062204	0.079457	8.3943E-05	0.66825	0.00070598	1056.463309738851	39.787	0.31185	39.787	39.605	39.917	0					13	5	3	0	0	0	0.04112	1	14939	14939		133.7	66.358	1	50466000			25948	6189	16518	16606	24929	24929					-0.06952003587070976
QEVNFQEY	8	Unmodified	_QEVNFQEY_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	HCT116MG_D190212_S2	2	528.7344970703125	2	528.735271	1055.45599	0.20778	0.00010986	-0.19982	-0.00010565	0.0079541	4.2056E-06	528.7351102081824	39.82	0.51721	39.747	39.584	40.102	-0.072842					27	9	4	0	0	0	0.016574	1	14988	14988		156.16	70.799	1	234400000			25949	6189	16518	16606	24930	24930					-0.06952003587070976
QEVNFQEY	8	Unmodified	_QEVNFQEY_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	HCT116MG_D190212_S2	2	1056.461669921875	1	1056.46327	1055.45599	0.39498	0.00041728	-0.036958	-3.9044E-05	0.35802	0.00037823	1056.4631116910086	39.808	0.51721	39.735	39.584	40.102	-0.072838					25	9	4	0	0	0	0.04112	1	14989	14989		133.7	44.798	1	254920000			25950	6189	16518	16606	24931	24931					-0.06952003587070976
QEVNFQEY	8	Unmodified	_QEVNFQEY_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	HCT116MG_D190212_S3	3	528.7359619140625	2	528.735271	1055.45599	0.27817	0.00014708	0.0197	1.0416E-05	0.29787	0.0001575	528.7352823242865	40.073	0.46469	39.771	39.595	40.06	-0.30137					36	11	4	0	0	0	0.016574	1	14814	14814		156.16	70.799	1	103350000			25951	6189	16518	16606	24932	24932					-0.06952003587070976
QEVNFQEY	8	Unmodified	_QEVNFQEY_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	HCT116MG_D190212_S3	3	1056.4639892578125	1	1056.46327	1055.45599	0.46886	0.00049533	0.11341	0.00011981	0.58226	0.00061514	1056.4631656646472	40.023	0.44843	39.721	39.611	40.06	-0.30137					25	10	4	0	0	0	0.04112	1	14828	14828		133.7	65.621	1	64974000			25952	6189	16518	16606	24933	24933					-0.06952003587070976
QEVNFQEY	8	Unmodified	_QEVNFQEY_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	HCT116MG_D190212_S4	4	528.7354736328125	2	528.735271	1055.45599	0.4803	0.00025395	0.45692	0.00024159	0.93722	0.00049554	528.735344288979	40.107	0.32455	39.728	39.616	39.941	-0.37936					18	8	3	0	0	0	0.04112	1	14690	14690		133.7	66.358	1	16199000			25953	6189	16518	16606	24934	24934					-0.06952003587070976
QEVNFQEY	8	Unmodified	_QEVNFQEY_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	HCT116MG_D190212_S4	4	1056.4642333984375	1	1056.46327	1055.45599	0.62293	0.0006581	0.16797	0.00017745	0.7909	0.00083555	1056.4635171466364	40.127	0.24803	39.748	39.616	39.864	-0.37936					15	6	3	0	0	0	0.04112	1	14703	14703		133.7	66.358	1	10449000			25954	6189	16518	16606	24935	24935					-0.06952003587070976
QEVNRSQPPP	10	Unmodified	_QEVNRSQPPP_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	MULTI-SECPEP	HCT116MG_D190212_S4	4	575.774658203125	2	576.293819	1150.57309	0.42212	0.00024327	0.42657	0.00024583	0.84869	0.0004891	576.7956598795294	20.722	0.25982	20.514	20.346	20.606	-0.20737					6	4	2	0	0	0	0.29734	1	7127	7127		5.7319	0	1	1100000	+		25955	13540	16519	16607	24936	24936					0.003821543525418747
QEVQKLHFV	9	Unmodified	_QEVQKLHFV_					0	0	0			REV__RYR3|p.E3462K|1|0.28|ENSG00000198838|chr15:33812989-33812989|G/A|missense_variant	REV__RYR3|p.E3462K|1|0.28|ENSG00000198838|chr15:33812989-33812989|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	564.834716796875	2	564.314023	1126.61349	0.4987	0.00028142	-2.8825	-0.0016267	-2.3838	-0.0013452	564.3119113273848	32.146	0.20804	31.916	31.787	31.995	-0.23009					5	3	2	0	0	0	0.14889	1	11865	11865		41.84	14.956	1	7707600	+		25956	17487	16520	16608	24937	24937					0.05525120742936451
QEVQRYETYRW	11	Unmodified	_QEVQRYETYRW_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MSMS	HCT116MG_D190212_S3	3	779.373779296875	2	779.375872	1556.73719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.658	1	19.717	19.217	20.217	0.05983								0	0	0	0.95731	1	6754	6754		2.4985	1.0166	1				25957	4237	16521	16609	24938	24938					-0.01890872947387834
QEVSRQLKQ	9	Unmodified	_QEVSRQLKQ_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MSMS	HCT116MG_D190212_S3	3	558.24658203125	2	558.312012	1114.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.059	1	34.762	34.262	35.262	-0.29707								0	0	0	0.76575	1	12927	12927		15.847	1.0089	1		+		25958	11844	16522	16610	24939	24939					0.05675031249234053
QEWAFDWE	8	Unmodified	_QEWAFDWE_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MSMS	HCT116MG_D190212_S3	3	555.7298583984375	2	555.729989	1109.44543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.656	1	27.468	26.968	27.968	-0.18847								0	0	0	0.87079	1	9976	9976		16.942	2.104	1		+		25959	13125	16523	16611	24940	24940					-0.10491986241527229
QEWEVKAL	8	Unmodified	_QEWEVKAL_					0	0	0		ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	HCT116MG_D190212_S2	2	501.76611328125	2	501.766374	1001.5182	0.20027	0.00010049	-0.19	-9.5338E-05	0.010269	5.1528E-06	501.7661161938287	44.122	0.2565	44.044	43.916	44.173	-0.078373					12	4	4	0	0	0	0.0065428	1	16760	16760		183.04	54.673	1	44527000			25960	6490	16524	16612	24941	24941					0.01749767551905279
QEWEVKAL	8	Unmodified	_QEWEVKAL_					0	0	0		ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MATCH	HCT116MG_D190212_S3	3		2	501.766374	1001.5182	0.64643	0.00032436	-0.10399	-5.218E-05	0.54244	0.00027218	501.7664579468939	44.404	0.2076	44.097	43.967	44.175	-0.30759	0.02641	7.3061E-05	NaN	183.04	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7605900			25961	6490	16524	16612							0.01749767551905279
QEWGKEAQL	9	Unmodified	_QEWGKEAQL_					0	0	0		tr|U7T1R4|U7T1R4_FUSNU4-carboxymuconolactonedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00545PE=4SV=1	tr|U7T1R4|U7T1R4_FUSNU4-carboxymuconolactonedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00545PE=4SV=1	tr|U7T1R4|U7T1R4_FUSNU4-carboxymuconolactonedecarboxylaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00545PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	363.5169372558594	3	363.517218	1087.52982	-0.11703	-4.2542E-05	0.072849	2.6482E-05	-0.044179	-1.606E-05	363.517130160008	22.819	0.26044	22.819	22.689	22.949	0					10	4	3	0	0	0	0.28073	1	8114	8114		30.703	6.9137	1	17892000			25962	18560	16525	16613	24942	24942					-0.0104403542475211
QEWKFRQQMRQ	11	Unmodified	_QEWKFRQQMRQ_					0	0	0		KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	782.89453125	2	782.893709	1563.77286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.844	1	40.542	40.042	41.042	-0.30161								0	0	0	0.95686	1	15176	15176		2.7352	0.23671	1				25963	1080	16526	16614	24943	24943					0.01352886028598732
QEWRRQLPWER	11	Unmodified	_QEWRRQLPWER_					0	0	0			REV__ENST00000450207.5_2_22:50315257-50315350:+|nuORF	REV__ENST00000450207.5_2_22:50315257-50315350:+|nuORF	MSMS	HCT116MG_D190212_S1	1	792.4119873046875	2	792.413123	1582.81169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.792	1	32.792	32.292	33.292	0								0	0	0	0.96003	1	12113	12113		1.0715	0.72083	1		+		25964	15704	16527	16615	24944	24944					0.04359934654667086
QEYALHLL	8	Unmodified	_QEYALHLL_					0	0	0			REV__RAB3GAP2|p.V1035Cfs*2|1|0.41|ENSG00000118873|chr1:220164784-220164785|-/A|frameshift_variant	REV__RAB3GAP2|p.V1035Cfs*2|1|0.41|ENSG00000118873|chr1:220164784-220164785|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	493.76934814453125	2	493.768917	985.523281	0.3745	0.00018491	-0.19422	-9.5899E-05	0.18028	8.9015E-05	493.76868669272113	46.674	0.24044	46.302	46.14	46.38	-0.37134					6	4	2	0	0	0	0.74206	1	17257	17257		18.135	5.6034	1	4969300	+		25965	11644	16528	16616	24945	24945					0.029940714145254788
QEYEAIYLA	9	Unmodified	_QEYEAIYLA_					0	0	0		ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	MULTI-MSMS	HCT116MG_D190212_S3	3	550.26953125	2	550.268947	1098.52334	0.32286	0.00017766	-0.28964	-0.00015938	0.033218	1.8279E-05	550.2691363005843	49.962	0.26105	49.646	49.498	49.759	-0.31525					7	4	2	0	0	0	0.090581	1	18869	18869		60.074	27.768	1	7468400			25966	6219	16529	16617	24946	24946					-0.0219797337615546
QEYEAIYLA	9	Unmodified	_QEYEAIYLA_					0	0	0		ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	MULTI-MATCH	HCT116MG_D190212_S1	1		2	550.268947	1098.52334	0.42508	0.00023391	-0.25297	-0.0001392	0.17212	9.471E-05	550.2687190245349	49.621	0.20692	49.621	49.492	49.699	0	-0.024673	0.00014823	NaN	60.074	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6692400			25967	6219	16529	16617							-0.0219797337615546
QEYFGSLAA	9	Unmodified	_QEYFGSLAA_					0	0	0		ENST00000472295.1_1_20:3202423-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENST00000490838.6_1_20:3193963-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-2|ITPA;ENSG00000125877|ENST00000380113|ITPA	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	985.4627685546875	1	985.462538	984.455261	0.88007	0.00086728	-0.27888	-0.00027482	0.6012	0.00059246	985.4620289847336	46.454	0.30906	46.343	46.162	46.471	-0.11121					11	5	3	0	0	0	0.0048275	1	17698	17698		139.14	71.795	1	47572000			25968	2912	16530	16618	24947	24947					-0.03758798236151506
QEYFGSLAA	9	Unmodified	_QEYFGSLAA_					0	0	0		ENST00000472295.1_1_20:3202423-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENST00000490838.6_1_20:3193963-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-2|ITPA;ENSG00000125877|ENST00000380113|ITPA	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	985.4625854492188	1	985.462538	984.455261	0.96372	0.00094971	-0.28089	-0.00027681	0.68282	0.0006729	985.4621143734206	46.673	0.46912	46.359	46.177	46.646	-0.31405					16	8	3	0	0	0	0.0053819	1	17503	17503		134.3	70.059	1	22692000			25969	2912	16530	16618	24948	24948					-0.03758798236151506
QEYFGSLAA	9	Unmodified	_QEYFGSLAA_					0	0	0		ENST00000472295.1_1_20:3202423-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENST00000490838.6_1_20:3193963-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-2|ITPA;ENSG00000125877|ENST00000380113|ITPA	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	493.2349548339844	2	493.234907	984.455261	0.37718	0.00018604	0.17815	8.787E-05	0.55533	0.00027391	493.23483500956553	46.64	0.31262	46.326	46.125	46.437	-0.31405					10	5	3	0	0	0	0.016701	1	17512	17512		99.799	55.392	1	5231400			25970	2912	16530	16618	24949	24949					-0.03758798236151506
QEYFGSLAA	9	Unmodified	_QEYFGSLAA_					0	0	0		ENST00000472295.1_1_20:3202423-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENST00000490838.6_1_20:3193963-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-2|ITPA;ENSG00000125877|ENST00000380113|ITPA	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	985.462646484375	1	985.462538	984.455261	0.71824	0.0007078	-0.089583	-8.8281E-05	0.62866	0.00061952	985.4623723272014	46.726	0.30699	46.354	46.177	46.484	-0.37134					12	5	3	0	0	0	0.0062667	1	17251	17251		126.57	69.095	1	10711000			25971	2912	16530	16618	24950	24950					-0.03758798236151506
QEYFGSLAA	9	Unmodified	_QEYFGSLAA_					0	0	0		ENST00000472295.1_1_20:3202423-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENST00000490838.6_1_20:3193963-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-2|ITPA;ENSG00000125877|ENST00000380113|ITPA	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	ENST00000472295.1_1_20:3202423-3204105:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	493.23431396484375	2	493.234907	984.455261	0.34453	0.00016993	-0.14086	-6.9475E-05	0.20367	0.00010046	493.23452609089645	46.674	0.25525	46.302	46.177	46.432	-0.37134					7	4	2	0	0	0	0.061422	1	17270	17270		69.105	35.002	1	3358900			25972	2912	16530	16618	24951	24951					-0.03758798236151506
QEYGTAYTP	9	Unmodified	_QEYGTAYTP_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2295532226562	2	515.229822	1028.44509	0.27042	0.00013933	0.2884	0.00014859	0.55882	0.00028792	515.2298357334655	32.092	0.36503	32.092	31.805	32.17	0					10	6	2	0	0	0	0.14171	1	11802	11802		49.933	31.798	1	3879900			25973	2164	16531	16619	24952	24952					-0.06799405961396587
QEYGTAYTP	9	Unmodified	_QEYGTAYTP_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2306518554688	2	515.229822	1028.44509	0.19689	0.00010145	-0.21284	-0.00010966	-0.01595	-8.218E-06	515.2298385029148	32.199	0.62383	31.969	31.735	32.359	-0.23009					19	11	3	0	0	0	0.26536	1	11925	11925		34.402	11.253	1	13850000			25974	2164	16531	16619	24953	24953					-0.06799405961396587
QEYGTAYTP	9	Unmodified	_QEYGTAYTP_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	HCT116MG_D190212_S2	2	1029.4534912109375	1	1029.45237	1028.44509	0.3799	0.00039109	-0.17942	-0.00018471	0.20048	0.00020638	1029.4524731139336	32.251	0.41533	32.021	31.735	32.15	-0.23009					13	7	2	0	0	0	0.0077497	1	11950	11950		118.89	72.874	1	19305000			25975	2164	16531	16619	24954	24954					-0.06799405961396587
QEYGTAYTP	9	Unmodified	_QEYGTAYTP_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2300415039062	2	515.229822	1028.44509	0.26414	0.00013609	-1.3911	-0.00071676	-1.127	-0.00058067	515.2298155779226	32.571	0.6251	32.291	31.888	32.513	-0.27995					25	11	3	0	0	0	0.055677	1	11865	11865		71.922	30.083	1	9400100			25976	2164	16531	16619	24955	24955					-0.06799405961396587
QEYPAIRY	8	Unmodified	_QEYPAIRY_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	520.76513671875	2	520.263999	1038.51345	0.22456	0.00011683	0.46481	0.00024182	0.68937	0.00035865	520.2641714869936	37.14	0.46389	37.034	36.765	37.229	-0.10648					20	8	3	0	0	0	0.016574	1	13909	13909		156.16	67.252	1	43467000			25977	1343	16532	16620	24956	24956					-0.0042711659086762666
QEYPAIRY	8	Unmodified	_QEYPAIRY_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	HCT116MG_D190212_S3	3	520.26416015625	2	520.263999	1038.51345	0.36179	0.00018823	0.58278	0.0003032	0.94457	0.00049143	520.2644646318458	37.398	0.36411	37.097	36.821	37.185	-0.30137					15	6	3	0	0	0	0.26254	1	13861	13861		62.573	22.615	1	8979900			25978	1343	16532	16620	24957	24957					-0.0042711659086762666
QEYPDDRTA	9	Unmodified	_QEYPDDRTA_					0	0	0		DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;DAB2IP|p.F712Lfs*81|1|0.42|ENSG00000136848|chr9:121772659-121772659|T/-|frameshift_variant	DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant	DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	547.7417602539062	2	547.741085	1093.46762	0.40957	0.00022434	-0.073616	-4.0323E-05	0.33596	0.00018402	547.7410690368226	19.56	0.26051	19.62	19.438	19.698	0.05983					7	4	2	0	0	0	0.25384	1	6709	6709		35.612	6.5307	1	2478800			25979	636	16533	16621	24958	24958					-0.07537806563755112
QEYPTLKVP	9	Unmodified	_QEYPTLKVP_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-MSMS	HCT116MG_D190212_S1	1	537.7949829101562	2	537.795132	1073.57571	0.31191	0.00016774	0.089461	4.8112E-05	0.40137	0.00021585	537.7951476701317	42.734	0.72496	42.734	42.383	43.108	0					27	13	3	0	0	0	0.0082095	1	16091	16091		117.76	67.828	1	20800000			25980	1539;9398	16534	16622	24959	24959					0.0418660975747116
QEYPTLKVP	9	Unmodified	_QEYPTLKVP_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7944946289062	2	537.795132	1073.57571	0.59496	0.00031997	0.075086	4.0381E-05	0.67005	0.00036035	537.7950741454155	42.783	1.0852	42.713	42.325	43.41	-0.069981					51	20	4	0	0	0	0.0034669	2	16135	16135;16384		163.69	101.11	1	144440000			25981	1539;9398	16534	16622	24960;24961	24960					0.0418660975747116
QEYPTLKVP	9	Unmodified	_QEYPTLKVP_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-MSMS	HCT116MG_D190212_S3	3	538.625	2	537.795132	1073.57571	0.53836	0.00028953	-0.035182	-1.8921E-05	0.50318	0.00027061	537.7950400892632	43.066	1.1501	42.761	42.352	43.502	-0.30472					58	27	3	0	0	0	0.0046822	3	16079	15956;16079;16189		140.63	78.06	1	43083000			25982	1539;9398	16534	16622	24962;24963;24964	24963					0.0418660975747116
QEYPTLKVP	9	Unmodified	_QEYPTLKVP_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MSMS	HCT116MG_D190212_S4	4	537.7955932617188	2	537.795132	1073.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.93	1	42.556	42.056	43.056	-0.37493								0	0	0	0.018972	1	15797	15797		93.166	40.898	1				25983	1539;9398	16534	16622	24965	24965					0.0418660975747116
QEYPTLKVP	9	Unmodified	_QEYPTLKVP_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MSMS	HCT116MG_D190212_S4	4	537.71875	2	537.795132	1073.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.977	1	42.603	42.103	43.103	-0.37493								0	0	0	0.016501	1	15816	15816		96.936	44.667	1				25984	1539;9398	16534	16622	24966	24966					0.0418660975747116
QEYQRLMDI	9	Unmodified	_QEYQRLMDI_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MSMS	HCT116MG_D190212_S2	2	598.291748046875	2	598.29243	1194.57031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.927	1	45.826	45.326	46.326	-0.1014								0	0	0	0.038892	1	17480	17480		74.2	11.627	1			+	25985	559	16535	16623	24967	24967					-0.019194370966260976
QEYQRLNEV	9	Unmodified	_QEYQRLNEV_					0	0	0		ENSG00000153237|ENST00000283233|CCDC148;nc|ENSG00000153237|Q8NFR7-3|CCDC148;ENST00000451554.1_1_2:159145303-159312956:-|nuORF;CCDC148|p.K420Nfs*15|2|0.39|ENSG00000153237|chr2:158220705-158220705|T/-|frameshift_variant	ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	MULTI-MSMS	HCT116MG_D190212_S2	2	589.795166015625	2	589.793652	1177.57275	0.86781	0.00051183	-0.020124	-1.1869E-05	0.84769	0.00049996	589.7937446552023	36.175	0.25823	36.047	35.916	36.174	-0.12799					14	4	4	0	0	0	0.0094709	1	13523	13523		114.65	38.888	1	64356000			25986	4185	16536	16624	24968	24968					-0.008932653673355162
QEYQRLNEV	9	Unmodified	_QEYQRLNEV_					0	0	0		ENSG00000153237|ENST00000283233|CCDC148;nc|ENSG00000153237|Q8NFR7-3|CCDC148;ENST00000451554.1_1_2:159145303-159312956:-|nuORF;CCDC148|p.K420Nfs*15|2|0.39|ENSG00000153237|chr2:158220705-158220705|T/-|frameshift_variant	ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	MULTI-MSMS	HCT116MG_D190212_S3	3	589.7937622070312	2	589.793652	1177.57275	0.27863	0.00016433	0.3707	0.00021864	0.64934	0.00038297	589.7938670241617	36.369	0.36411	36.068	35.938	36.302	-0.30043					17	6	4	0	0	0	0.0058997	1	13438	13438		129.77	29.682	1	31599000			25987	4185	16536	16624	24969	24969					-0.008932653673355162
QEYQRLNEV	9	Unmodified	_QEYQRLNEV_					0	0	0		ENSG00000153237|ENST00000283233|CCDC148;nc|ENSG00000153237|Q8NFR7-3|CCDC148;ENST00000451554.1_1_2:159145303-159312956:-|nuORF;CCDC148|p.K420Nfs*15|2|0.39|ENSG00000153237|chr2:158220705-158220705|T/-|frameshift_variant	ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	MULTI-MSMS	HCT116MG_D190212_S4	4	589.7938232421875	2	589.793652	1177.57275	0.75629	0.00044605	-0.57797	-0.00034088	0.17832	0.00010517	589.7934219151224	36.485	0.20742	36.1	35.97	36.177	-0.38558					9	3	3	0	0	0	0.061422	1	13377	13377		69.105	2.6482	1	9807900			25988	4185	16536	16624	24970	24970					-0.008932653673355162
QEYRYHYGEMQ	11	Unmodified	_QEYRYHYGEMQ_					0	0	0			REV__ENSG00000261594|ENST00000562197|TPBGL	REV__ENSG00000261594|ENST00000562197|TPBGL	MSMS	HCT116MG_D190212_S1	1	752.3203735351562	2	752.319708	1502.62486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.277	1	14.277	13.777	14.777	0								0	0	0	0.9598	1	4660	4660		1.1933	0	1		+		25989	14419	16537	16625	24971	24971					-0.10634470015907027
QEYSEFVKA	9	Unmodified	_QEYSEFVKA_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	550.7677612304688	2	550.766571	1099.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.189	1	35.189	34.689	35.689	0								0	0	0	0.00012964	1	13082	13082		132.38	72.306	1				25990	175	16538	16626	24972	24972					-0.027188575189029507
QEYSEFVKA	9	Unmodified	_QEYSEFVKA_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	550.7673950195312	2	550.766571	1099.51859	0.38812	0.00021376	0.35825	0.00019731	0.74637	0.00041108	550.7667305165603	35.158	0.36206	35.001	34.763	35.125	-0.15666					12	6	3	0	0	0	0.0036431	1	13109	13109		155.95	86.849	1	114320000			25991	175	16538	16626	24973	24973					-0.027188575189029507
QEYSEFVKA	9	Unmodified	_QEYSEFVKA_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	550.7671508789062	2	550.766571	1099.51859	0.79689	0.0004389	0.85682	0.00047191	1.6537	0.00091081	550.766982778508	35.412	0.24228	35.113	34.957	35.199	-0.29922					20	11	2	0	0	0	0.0024989	1	13062	13062		184.36	115.25	1	67788000			25992	175	16538	16626	24974	24974					-0.027188575189029507
QEYSEFVKA	9	Unmodified	_QEYSEFVKA_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	550.7674560546875	2	550.766571	1099.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.478	1	35.092	34.592	35.592	-0.38606								0	0	0	0.009837	1	12990	12990		107.1	45.742	1				25993	175	16538	16626	24975	24975					-0.027188575189029507
QEYTIARSNP	10	Unmodified	_QEYTIARSNP_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-MSMS	HCT116MG_D190212_S1	1	589.7937622070312	2	589.793652	1177.57275	0.65359	0.00038548	-0.29706	-0.0001752	0.35653	0.00021028	589.793660587161	36.159	0.26342	36.159	35.993	36.257	0					6	4	2	0	0	0	0.052106	1	13490	13490		85.642	10.713	1	6333800			25994	5049	16539	16627	24976	24976					-0.008932653673127788
QFDHSDSDD	9	Unmodified	_QFDHSDSDD_					0	0	0		RAD51AP1|p.S188Ifs*41|1|0.05|ENSG00000111247|chr12:4548791-4548792|-/TAAAAATCAAT|frameshift_variant;nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1	RAD51AP1|p.S188Ifs*41|1|0.05|ENSG00000111247|chr12:4548791-4548792|-/TAAAAATCAAT|frameshift_variant	RAD51AP1|p.S188Ifs*41|1|0.05|ENSG00000111247|chr12:4548791-4548792|-/TAAAAATCAAT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	533.19140625	2	533.191425	1064.3683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2955	1	5.1473	4.6473	5.6473	-0.14816								0	0	0	0.77025	1	1673	1673		0	0	1				25995	2279	16540	16628	24977	24977					-0.16131249248519453
QFEGSLVRRT	10	Unmodified	_QFEGSLVRRT_					0	0	0			REV__ENSG00000167325|ENST00000300738|RRM1	REV__ENSG00000167325|ENST00000300738|RRM1	MSMS	HCT116MG_D190212_S3	3	596.826904296875	2	596.825286	1191.63602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.07	1	45.758	45.258	46.258	-0.31237								0	0	0	0.91279	1	17268	17268		13.042	2.2185	1		+		25996	13145	16541	16629	24978	24978					0.04786720140532452
QFEKRAQEQTY	11	Unmodified	_QFEKRAQEQTY_					0	0	0			REV__nc|ENSG00000112562|Q9H3U7-2|SMOC2	REV__nc|ENSG00000112562|Q9H3U7-2|SMOC2	MSMS	HCT116MG_D190212_S2	2	714.346435546875	2	714.349323	1426.68409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.205	1	23.825	23.325	24.325	-0.38003								0	0	0	0.94755	1	8663	8663		7.609	2.3121	1		+		25997	17109	16542	16630	24979	24979					-0.012182507300622092
QFEPPGQEGKP	11	Unmodified	_QFEPPGQEGKP_					0	0	0			REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	REV__COL9A2|p.G415Efs*116|1|0.33|ENSG00000049089|chr1:40304365-40304365|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	607.2958374023438	2	607.296027	1212.5775	0.63075	0.00038305	-0.026036	-1.5812E-05	0.60471	0.00036724	607.7973682930477	27.612	1.1969	27.423	26.424	27.621	-0.18847					31	22	3	0	0	0	0.71643	1	9864	9864		15.739	0.49014	1	4883600	+		25998	10249	16543	16631	24980	24980					-0.020283812245679655
QFGEDTGE	8	Unmodified	_QFGEDTGE_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MSMS	HCT116MG_D190212_S4	4	441.6775207519531	2	441.677422	881.340291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.917	1	18.731	18.231	19.231	-0.18564								0	0	0	0.8837	1	6382	6382		13.508	0	1		+		25999	13023	16544	16632	24981	24981					-0.10512527437936114
QFINEPNQGDP	11	Unmodified	_QFINEPNQGDP_					0	0	0			REV__FANCI|p.K869N|1|0.32|ENSG00000140525|chr15:89295065-89295065|G/T|missense_variant	REV__FANCI|p.K869N|1|0.32|ENSG00000140525|chr15:89295065-89295065|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	629.2611694335938	2	629.788566	1257.56258	0.79248	0.0004991	1.0107	0.00063656	1.8032	0.0011357	630.2907681542329	33.189	0.20779	32.979	32.846	33.054	-0.2099					5	3	2	0	0	0	0.36308	1	12312	12312		11.495	5.7629	1	8166200	+		26000	16810	16545	16633	24982	24982					-0.055898730925719065
QFKRGKLISM	10	Unmodified	_QFKRGKLISM_					0	0	0			REV__ENSG00000121377|ENST00000240687|TAS2R7	REV__ENSG00000121377|ENST00000240687|TAS2R7	MULTI-MSMS	HCT116MG_D190212_S1	1	605.7581787109375	2	604.352625	1206.6907	0.35162	0.0002125	2.0838	0.0012593	2.4354	0.0014718	604.3536828908801	49.966	0.82483	49.966	49.595	50.42	0					23	15	3	0	0	0	0.73913	1	18953	18953		17.113	5.6182	1	37833000	+		26001	11715	16546	16634	24983	24983					0.09562015687629355
QFLSQKRLSL	10	Unmodified	_QFLSQKRLSL_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-6|DEF8	REV__nc|ENSG00000140995|Q6ZN54-6|DEF8	MSMS	HCT116MG_D190212_S4	4	407.2440185546875	3	407.243429	1218.70846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.98	1	42.605	42.105	43.105	-0.37493								0	0	0	0.95511	1	15817	15817		3.5871	0	1		+		26002	12320	16547	16635	24984	24984					0.10785054214125012
QFPPDVPD	8	Unmodified	_QFPPDVPD_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	HCT116MG_D190212_S4	4	914.4219360351562	1	914.425424	913.418148	0.81697	0.00074706	-4.0782	-0.0037292	-3.2612	-0.0029821	914.4210885175942	27.34	0.20757	27.028	26.899	27.106	-0.3114					6	3	2	0	0	0	0.58007	1	9792	9792		34.102	5.0209	1	1821700			26003	5180	16548	16636	24985	24985					-0.042024697819101675
QFQRRKWPEM	10	Unmodified	_QFQRRKWPEM_					0	0	0		ARFGEF2-SULF2|2|fusion;ARFGEF2-SULF2|1|fusion;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	ARFGEF2-SULF2|2|fusion	ARFGEF2-SULF2|2|fusion	MSMS	HCT116MG_D190212_S4	4	703.364013671875	2	703.361513	1404.70847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.04	1	56.739	56.239	57.239	-0.3004								0	0	0	0.96453	1	21399	21399		1.4819	0.15237	1				26004	168	16549	16637	24986	24986					0.022307309424832056
QFRQKKKKKK	10	Unmodified	_QFRQKKKKKK_					0	0	0		ENST00000454171.1_1_7:84657519-84657798:+|nuORF	ENST00000454171.1_1_7:84657519-84657798:+|nuORF	ENST00000454171.1_1_7:84657519-84657798:+|nuORF	MSMS	HCT116MG_D190212_S1	1	673.9384765625	2	673.940788	1345.86702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.852	1	38.852	38.352	39.352	0								0	0	0	0.94339	1	14558	14558		6.2058	0	1				26005	8007	16550	16638	24987	24987					0.20792392913040203
QFVGHPGK	8	Unmodified	_QFVGHPGK_					0	0	0		CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant;CPAMD8|p.H1052Ifs*127|3|0.34|ENSG00000160111|chr19:16929074-16929074|C/-|frameshift_variant;CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	435.2349548339844	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.447	1	13.447	12.947	13.947	0								0	0	0	0.8837	1	4369	4369		0.69038	0	1				26006	591	16551	16639	24988	24988					0.016046662743860907
QFVGHPGK	8	Unmodified	_QFVGHPGK_					0	0	0		CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant;CPAMD8|p.H1052Ifs*127|3|0.34|ENSG00000160111|chr19:16929074-16929074|C/-|frameshift_variant;CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	435.2351989746094	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6447	1	4.3801	3.8801	4.8801	-0.26456								0	0	0	0.8837	1	1418	1418		0.69038	0	1				26007	591	16551	16639	24989	24989					0.016046662743860907
QFVGHPGK	8	Unmodified	_QFVGHPGK_					0	0	0		CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant;CPAMD8|p.H1052Ifs*127|3|0.34|ENSG00000160111|chr19:16929074-16929074|C/-|frameshift_variant;CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	435.235107421875	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.349	1	6.0922	5.5922	6.5922	-0.25684								0	0	0	0.8837	1	1939	1939		0.69038	0	1				26008	591	16551	16639	24990	24990					0.016046662743860907
QFVGHPGK	8	Unmodified	_QFVGHPGK_					0	0	0		CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant;CPAMD8|p.H1052Ifs*127|3|0.34|ENSG00000160111|chr19:16929074-16929074|C/-|frameshift_variant;CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	435.234619140625	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6015	1	7.36	6.86	7.86	-0.24153								0	0	0	0.8837	1	2323	2323		0.69038	0	1				26009	591	16551	16639	24991	24991					0.016046662743860907
QFVGHPGK	8	Unmodified	_QFVGHPGK_					0	0	0		CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant;CPAMD8|p.H1052Ifs*127|3|0.34|ENSG00000160111|chr19:16929074-16929074|C/-|frameshift_variant;CPAMD8|p.M1571Cfs*32|1|0.32|ENSG00000160111|chr19:16902765-16902765|G/-|frameshift_variant;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	CPAMD8|p.H1052Afs*30|1|0.33|ENSG00000160111|chr19:16929073-16929074|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	435.2345886230469	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1217	1	7.8902	7.3902	8.3902	-0.23148								0	0	0	0.8837	1	2481	2481		0.69038	0	1				26010	591	16551	16639	24992	24992					0.016046662743860907
QFYDPSCSN	9	Unmodified	_QFYDPSCSN_					0	0	0			REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	REV__LRP1B|p.C3762Lfs*2|1|0.32|ENSG00000168702|chr2:140358089-140358090|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	354.140869140625	3	354.13953	1059.39676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.507	1	16.592	16.092	17.092	0.085424								0	0	0	0.76973	1	5482	5482		0.96228	0.33545	1		+		26011	13209	16552	16640	24993	24993					-0.1305622287291044
QGDVTASVTA	10	Unmodified	_QGDVTASVTA_					0	0	0		SNX19|p.T701Hfs*6|1|0.41|ENSG00000120451|chr11:130908017-130908018|-/G|frameshift_variant;nc|ENSG00000120451|Q92543-2|SNX19;ENSG00000120451|ENST00000265909|SNX19	SNX19|p.T701Hfs*6|1|0.41|ENSG00000120451|chr11:130908017-130908018|-/G|frameshift_variant	SNX19|p.T701Hfs*6|1|0.41|ENSG00000120451|chr11:130908017-130908018|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	474.7429504394531	2	474.735271	947.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.429	1	25.322	24.822	25.822	-0.10618								0	0	0	0.84701	1	9078	9078		22.736	4.6013	1				26012	2698	16553	16641	24994	24994					-0.01984003587085681
QGELIGRKR	9	Unmodified	_QGELIGRKR_					0	0	0		CDH10|p.T108Qfs*30|1|0.4|ENSG00000040731|chr5:24537584-24537584|T/-|frameshift_variant;CDH10|p.F102Lfs*36|1|0.41|ENSG00000040731|chr5:24537600-24537600|A/-|frameshift_variant	CDH10|p.T108Qfs*30|1|0.4|ENSG00000040731|chr5:24537584-24537584|T/-|frameshift_variant	CDH10|p.T108Qfs*30|1|0.4|ENSG00000040731|chr5:24537584-24537584|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	528.81884765625	2	528.817264	1055.61998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.604	1	52.298	51.798	52.798	-0.30639								0	0	0	0.76718	1	19890	19890		10.824	3.5347	1				26013	381	16554	16642	24995	24995					0.09439058694329105
QGGAQSPPGAP	11	Unmodified	_QGGAQSPPGAP_					0	0	0			REV__ENST00000522456.1_2_7:27150271-27153348:-|nuORF	REV__ENST00000522456.1_2_7:27150271-27153348:-|nuORF	MSMS	HCT116MG_D190212_S4	4	483.73492431640625	2	483.735606	965.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.716	1	16.549	16.049	17.049	-0.16664								0	0	0	0.58477	1	5492	5492		43.772	1.9328	1		+		26014	16248	16555	16643	24996	24996					-0.02745164147381729
QGGETDSN	8	Unmodified	_QGGETDSN_					0	0	0			REV__ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant	REV__ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	404.159423828125	2	404.159397	806.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0438	1	1.1047	0.60473	1.6047	0.060905								0	0	0	0.8837	1	323	323		2.0598	0	1		+		26015	9833	16556	16644	24997	24997					-0.10665984614797708
QGGFKIGV	8	Unmodified	_QGGFKIGV_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	403.2324523925781	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.772	1	7.7885	7.2885	8.2885	0.016533								0	0	0	0.8837	1	2347	2347		0.69038	0	1				26016	2866	16557	16645	24998	24998					0.03934148042867491
QGGGLLAA	8	Unmodified	_QGGGLLAA_					0	0	0			REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	MULTI-MSMS	HCT116MG_D190212_S2	2	686.3832397460938	1	686.383165	685.375889	0.4832	0.00033166	0.46878	0.00032176	0.95198	0.00065342	686.3833510939481	28.023	0.41362	27.693	27.512	27.926	-0.32987					13	7	3	0	0	0	0.13911	1	10207	10207		86.121	11.725	1	75499000	+		26017	10505	16558	16646	24999	24999					0.020615996003698456
QGGGLLAA	8	Unmodified	_QGGGLLAA_					0	0	0			REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	MULTI-MSMS	HCT116MG_D190212_S3	3	686.3831787109375	1	686.383165	685.375889	0.89749	0.00061602	-0.23272	-0.00015973	0.66477	0.00045629	686.3828516806362	27.992	0.4691	27.804	27.621	28.09	-0.18847					13	8	3	0	0	0	0.13911	1	10096	10096		86.121	11.725	1	15713000	+		26018	10505	16558	16646	25000	25000					0.020615996003698456
QGGGLLAA	8	Unmodified	_QGGGLLAA_					0	0	0			REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	686.383165	685.375889	0.4832	0.00033166	0.46878	0.00032176	0.95198	0.00065342	686.3833510939481	28.023	0.41362	27.693	27.512	27.926	-0.32987	-0.065484	0.00029734	NaN	86.121	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75499000	+		26019	10505	16558	16646							0.020615996003698456
QGGGLLAA	8	Unmodified	_QGGGLLAA_					0	0	0			REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	686.383165	685.375889	0.89749	0.00061602	-0.23272	-0.00015973	0.66477	0.00045629	686.3828516806362	27.992	0.4691	27.804	27.621	28.09	-0.18847	0.045844	-0.00018416	NaN	86.121	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15713000	+		26020	10505	16558	16646							0.020615996003698456
QGGPHSPT	8	Unmodified	_QGGPHSPT_					0	0	0		ENST00000522234.5_1_X:47078210-47085639:+|nuORF;ENST00000428400.5_1_X:47082893-47085639:+|nuORF	ENST00000522234.5_1_X:47078210-47085639:+|nuORF	ENST00000522234.5_1_X:47078210-47085639:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	780.3634033203125	1	780.363493	779.356216	0.38472	0.00030023	0.52355	0.00040856	0.90828	0.00070879	780.3640251337478	17.322	0.31208	17.403	17.221	17.534	0.081358					7	5	2	0	0	0	0.66848	1	5829	5829		26.341	0	1	2927500			26021	8563	16559	16647	25001	25001					-0.04228776410388946
QGGPWGGSMPF	11	Unmodified	_QGGPWGGSMPF_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MSMS	HCT116MG_D190212_S2	2	1120.4869384765625	1	1120.48804	1119.48076	0.63691	0.00071365	-1.2013	-0.001346	-0.56436	-0.00063236	1120.486327796226	55.902	0.46213	55.717	55.587	56.049	-0.18565					13	8	2	0	0	0	0.74191	1	21589	21589		5.7319	0.50118	1	27238000	+		26022	14205	16560	16648	25002	25002					-0.07419646985340478
QGGPWGGSMPF	11	Unmodified	_QGGPWGGSMPF_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1120.48804	1119.48076	0.64373	0.00072129	-1.3357	-0.0014966	-0.69193	-0.0007753	1120.4864326555696	55.734	0.5132	55.734	55.554	56.067	0	0.0088717	-2.8446E-05	NaN	5.7319	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100860000	+		26023	14205	16560	16648							-0.07419646985340478
QGGPWGGSMPF	11	Unmodified	_QGGPWGGSMPF_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1120.48804	1119.48076	0.63691	0.00071365	-1.2013	-0.001346	-0.56436	-0.00063236	1120.486327796226	55.902	0.46213	55.717	55.587	56.049	-0.18565	-0.0088717	0.00012213	NaN	5.7319	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27238000	+		26024	14205	16560	16648							-0.07419646985340478
QGGRGAGP	8	Unmodified	_QGGRGAGP_					0	0	0			REV__HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	REV__HID1|p.L141Wfs*62|1|0.54|ENSG00000167861|chr17:74963048-74963048|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	350.1806945800781	2	350.180269	698.345986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.978	1	36.593	36.093	37.093	-0.38486								0	0	0	0.8837	1	13553	13553		2.8892	0	1		+		26025	13170	16561	16649	25003	25003					-0.015253393449484065
QGKAARAK	8	Unmodified	_QGKAARAK_					0	0	0			REV__ENST00000298289.6_1_14:50085755-50087389:-|nuORF	REV__ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MSMS	HCT116MG_D190212_S3	3	415.2539367675781	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.712	1	64.511	64.011	65.011	-0.2009								0	0	0	0.8837	1	24594	24594		0.69038	0	1		+		26026	14768	16562	16650	25004	25004					0.07187757539975337
QGKQQFYFQFR	11	Unmodified	_QGKQQFYFQFR_					0	0	0			REV__ENSG00000100288|ENST00000406938|CHKB	REV__ENSG00000100288|ENST00000406938|CHKB	MSMS	HCT116MG_D190212_S3	3	492.9158020019531	3	492.917604	1475.73098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.009	1	21.043	20.543	21.543	0.034473								0	0	0	0.95422	1	7299	7299		4.1166	0.27072	1		+		26027	11074	16563	16651	25005	25005					0.012146536117143114
QGLLPVLESFK	11	Unmodified	_QGLLPVLESFK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S1	1	615.8575439453125	2	615.858264	1229.70197	0.50585	0.00031153	-0.39837	-0.00024534	0.10748	6.619E-05	615.8577697479325	56.505	0.51601	56.505	56.273	56.789	0					15	9	3	0	0	0	0.57187	2	21771	21748;21771		38.559	12.991	1	98433000			26028	2597	16564	16652	25006;25007	25007					0.09631116262744399
QGLLPVLESFK	11	Unmodified	_QGLLPVLESFK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S2	2	615.858642578125	2	615.858264	1229.70197	0.48916	0.00030125	0.096877	5.9662E-05	0.58604	0.00036091	615.8582593121824	56.573	0.37173	56.391	56.259	56.631	-0.18261					15	6	3	0	0	0	0.22509	1	21854	21854		72.59	40.552	1	76749000			26029	2597	16564	16652	25008	25008					0.09631116262744399
QGLLPVLESFK	11	Unmodified	_QGLLPVLESFK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	615.857666015625	2	615.858264	1229.70197	0.53347	0.00032854	0.15566	9.5866E-05	0.68914	0.00042441	615.8582529574147	56.669	0.73188	56.385	55.993	56.724	-0.28367					36	13	5	0	0	0	0.012403	2	21504	21503;21504		135.87	90.134	1	50765000			26030	2597	16564	16652	25009;25010	25010					0.09631116262744399
QGLLPVLESFK	11	Unmodified	_QGLLPVLESFK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S4	4	616.3597412109375	2	615.858264	1229.70197	0.7948	0.00048948	-0.13332	-8.2107E-05	0.66148	0.00040738	615.8580948211949	56.689	0.52215	56.389	56.101	56.623	-0.3004					25	9	4	0	0	0	0.0062012	1	21254	21254		139.32	85.917	1	38165000			26031	2597	16564	16652	25011	25011					0.09631116262744399
QGLPTESLFY	10	Unmodified	_QGLPTESLFY_					0	0	0		METTL25|p.I529Lfs*2|1|0.07|ENSG00000127720|chr12:82476651-82476651|A/-|frameshift_variant;ENST00000547357.5_1_12:82752311-82853681:+|nuORF;ENSG00000127720|ENST00000248306|METTL25	METTL25|p.I529Lfs*2|1|0.07|ENSG00000127720|chr12:82476651-82476651|A/-|frameshift_variant	METTL25|p.I529Lfs*2|1|0.07|ENSG00000127720|chr12:82476651-82476651|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	577.7899780273438	2	577.790047	1153.56554	0.3896	0.00022511	-0.072623	-4.1961E-05	0.31698	0.00018315	577.7898971334142	54.251	0.20901	53.955	53.825	54.034	-0.29587					5	3	2	0	0	0	0.35357	1	20569	20569		45.7	1.9272	1	2966400			26032	2977	16565	16653	25012	25012					-0.0050999796776523
QGNGNLFYWSF	11	Unmodified	_QGNGNLFYWSF_					0	0	0			REV__ENST00000392990.6_1_14:96998952-97000853:+|nuORF	REV__ENST00000392990.6_1_14:96998952-97000853:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	666.8024291992188	2	666.80402	1331.59349	0.125	8.3348E-05	-2.4566	-0.0016381	-2.3316	-0.0015547	666.801912116107	38.045	0.46821	38.045	37.811	38.279	0					14	8	2	0	0	0	0.57532	1	14230	14230		38.176	2.0485	1	17195000	+		26033	15320	16566	16654	25013	25013					-0.05904674987687031
QGPAAGAEQP	10	Unmodified	_QGPAAGAEQP_					0	0	0			REV__ENST00000379598.9_1_20:3782590-3782695:+|nuORF	REV__ENST00000379598.9_1_20:3782590-3782695:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	463.22222900390625	2	463.222331	924.430109	0.10314	4.7776E-05	1.895	0.00087782	1.9982	0.00092559	463.22232951864885	17.751	0.57232	17.833	17.534	18.106	0.081358					27	10	3	0	0	0	0.060393	1	5986	5986		81.89	3.7408	1	9922000	+		26034	15261	16567	16655	25014	25014					-0.03512853038716912
QGPPSGPGQPA	11	Unmodified	_QGPPSGPGQPA_					0	0	0		nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1	nc|ENSG00000137693|P46937-5|YAP1	nc|ENSG00000137693|P46937-5|YAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	496.74346923828125	2	496.743431	991.472308	0.45926	0.00022814	-0.453	-0.00022503	0.0062629	3.111E-06	496.7433184805379	21.478	1.6619	21.26	20.179	21.841	-0.21832					57	31	4	0	0	0	0.375	1	7369	7369		57.249	15.294	1	10611000			26035	3494	16568	16656	25015	25015					-0.023768776303313643
QGRSNAGG	8	Unmodified	_QGRSNAGG_					0	0	0			REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF	REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	373.6806945800781	2	373.680633	745.346714	-0.086069	-3.2162E-05	-0.31627	-0.00011818	-0.40234	-0.00015034	373.6805412432798	32.043	0.41526	31.668	31.434	31.849	-0.37529					10	7	2	0	0	0	0.87685	1	11640	11640		0.6015	0	1	4167300	+		26036	14678	16569	16657	25016	25016					-0.03614544695903987
QGRVKKLK	8	Unmodified	_QGRVKKLK_					0	0	0		ENST00000460912.6_1_6:152443573-152489284:-|nuORF	ENST00000460912.6_1_6:152443573-152489284:-|nuORF	ENST00000460912.6_1_6:152443573-152489284:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	478.8213195800781	2	478.821818	955.629084	0.27978	0.00013397	-0.25357	-0.00012141	0.026212	1.2551E-05	478.8215227123968	58.441	0.25389	58.271	58.196	58.449	-0.1703					7	4	2	0	0	0	0.87635	1	22624	22624		0.69038	0	1	15156000			26037	8046	16570	16658	25017	25017					0.14949452050643686
QGSSPFYQ	8	Unmodified	_QGSSPFYQ_					0	0	0		TRIM66|p.H466Lfs*42|1|0.6|ENSG00000166436|chr11:8640543-8640543|T/-|frameshift_variant;TRIM66|p.Q550Afs*26|1|0.4|ENSG00000166436|chr11:8640292-8640293|-/C|frameshift_variant;nc|ENSG00000166436|O15016-3|TRIM66;ENST00000481014.6_1_11:8646046-8673385:-|nuORF;TRIM66|p.P964Qfs*4|1|0.37|ENSG00000166436|chr11:8621158-8621158|G/-|frameshift_variant;nc|ENSG00000166436|O15016-2|TRIM66;nc|ENSG00000166436|O15016|TRIM66;ENSG00000166436|ENST00000646038|TRIM66	TRIM66|p.H466Lfs*42|1|0.6|ENSG00000166436|chr11:8640543-8640543|T/-|frameshift_variant	TRIM66|p.H466Lfs*42|1|0.6|ENSG00000166436|chr11:8640543-8640543|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	457.2081604003906	2	457.20615	912.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.684	1	23.639	23.139	24.139	-0.045856								0	0	0	0.87079	1	8374	8374		16.942	0	1				26038	4852	16571	16659	25018	25018					-0.06195640441717387
QHAIRVGNY	9	Unmodified	_QHAIRVGNY_					0	0	0			REV__SETD7|p.T251A|1|0.06|ENSG00000145391|chr4:139520288-139520288|T/C|missense_variant	REV__SETD7|p.T251A|1|0.06|ENSG00000145391|chr4:139520288-139520288|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	353.1891784667969	3	353.189435	1056.54648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.117	1	43.744	43.244	44.244	-0.37373								0	0	0	0.76995	1	16242	16242		1.0715	0	1		+		26039	17510	16572	16660	25019	25019					0.02046510251852851
QHCNHRRNK	9	Unmodified	_QHCNHRRNK_					0	0	0			REV__ENSG00000169413|ENST00000304677|RNASE6	REV__ENSG00000169413|ENST00000304677|RNASE6	MSMS	HCT116MG_D190212_S2	2	398.2017517089844	3	398.20034	1191.57919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.427	1	38.334	37.834	38.834	-0.09301								0	0	0	0.76902	1	14436	14436		2.4985	1.2837	1		+		26040	13244	16573	16661	25020	25020					-0.008936058969538863
QHDSDTTEYGS	11	Unmodified	_QHDSDTTEYGS_					0	0	0		ENSG00000165120|ENST00000297819|SSMEM1	ENSG00000165120|ENST00000297819|SSMEM1	ENSG00000165120|ENST00000297819|SSMEM1	MULTI-MSMS	HCT116MG_D190212_S1	1	620.2416381835938	2	620.241646	1238.46874	0.68707	0.00042615	-0.49874	-0.00030934	0.18832	0.00011681	620.2412056099266	20.357	0.20845	20.357	20.279	20.488	0					8	3	3	0	0	0	0.71532	1	7137	7137		16.149	16.149	1	6712100			26041	4750	16574	16662	25021	25021					-0.1409563698553029
QHGKVVMA	8	Unmodified	_QHGKVVMA_					0	0	0		TXN2|p.K106N|1|0.07|ENSG00000100348|chr22:36476802-36476802|C/A|missense_variant;ENSG00000100348|ENST00000216185|TXN2	TXN2|p.K106N|1|0.07|ENSG00000100348|chr22:36476802-36476802|C/A|missense_variant	TXN2|p.K106N|1|0.07|ENSG00000100348|chr22:36476802-36476802|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	435.2351989746094	2	435.23673	868.458907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.677	1	11.503	11.003	12.003	-0.17441								0	0	0	0.8837	1	3607	3607		0.69038	0	1				26042	1694	16575	16663	25022	25022					0.01941593056722013
QHNKVVMTA	9	Unmodified	_QHNKVVMTA_					0	0	0			REV__CON__Q0V8M9	REV__CON__Q0V8M9	MULTI-MSMS	HCT116MG_D190212_S2	2	514.271240234375	2	514.271301	1026.52805	0.19307	9.9292E-05	0.066654	3.4278E-05	0.25973	0.00013357	514.2712079033236	25.754	0.25906	25.385	25.239	25.498	-0.36914					8	4	3	0	0	0	0.16144	1	9306	9306		46.021	6.0636	1	27057000	+	+	26043	10263	16576	16664	25023	25023					0.01584632285630505
QHNKVVMTA	9	Unmodified	_QHNKVVMTA_					0	0	0			REV__CON__Q0V8M9	REV__CON__Q0V8M9	MULTI-MSMS	HCT116MG_D190212_S3	3	514.2713012695312	2	514.271301	1026.52805	0.30563	0.00015718	-0.62938	-0.00032367	-0.32374	-0.00016649	514.270990335724	25.336	0.36424	25.23	25.048	25.412	-0.10618					11	6	3	0	0	0	0.11731	1	9047	9047		54.774	22.468	1	16371000	+	+	26044	10263	16576	16664	25024	25024					0.01584632285630505
QHNKVVMTA	9	Unmodified	_QHNKVVMTA_					0	0	0			REV__CON__Q0V8M9	REV__CON__Q0V8M9	MULTI-MSMS	HCT116MG_D190212_S4	4	514.2714233398438	2	514.271301	1026.52805	0.3361	0.00017285	-0.75034	-0.00038588	-0.41424	-0.00021303	514.2709749455204	25.627	0.26016	25.337	25.204	25.464	-0.29022					8	4	3	0	0	0	0.16144	1	9114	9114		46.021	46.021	1	5523400	+	+	26045	10263	16576	16664	25025	25025					0.01584632285630505
QHNKVVMTA	9	Unmodified	_QHNKVVMTA_					0	0	0			REV__CON__Q0V8M9	REV__CON__Q0V8M9	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	514.271301	1026.52805	0.19307	9.9292E-05	0.066654	3.4278E-05	0.25973	0.00013357	514.2712079033236	25.754	0.25906	25.385	25.239	25.498	-0.36914	0.067437	0.0003622	NaN	54.774	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27057000	+	+	26046	10263	16576	16664							0.01584632285630505
QHPCCCGC	8	Unmodified	_QHPCCCGC_					0	0	0			REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	850.2476806640625	1	850.246296	849.23902	0.88237	0.00075023	0.60515	0.00051452	1.4875	0.0012648	850.2469968298178	30.633	0.3642	30.633	30.451	30.815	0					9	6	2	0	0	0	0.88026	1	11248	11248		0	0	1	4593500	+		26047	15034	16577	16665	25026	25026					-0.19163040209161863
QHPCCCGC	8	Unmodified	_QHPCCCGC_					0	0	0			REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	850.24609375	1	850.246296	849.23902	0.59402	0.00050506	-0.24772	-0.00021062	0.3463	0.00029444	850.2459928276998	32.196	0.67762	32.196	31.961	32.639	0					29	12	3	0	0	0	0.88026	1	11852	11852		0	0	1	65814000	+		26048	15034	16577	16665	25027	25027					-0.19163040209161863
QHPCCCGC	8	Unmodified	_QHPCCCGC_					0	0	0			REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	850.2470703125	1	850.246296	849.23902	0.62384	0.00053042	-0.26022	-0.00022125	0.36362	0.00030917	850.2458476769822	32.406	0.5728	32.176	31.995	32.567	-0.23009					16	10	2	0	0	0	0.88026	1	12012	12012		0	0	1	31570000	+		26049	15034	16577	16665	25028	25028					-0.19163040209161863
QHPCCCGC	8	Unmodified	_QHPCCCGC_					0	0	0			REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	850.2463989257812	1	850.246296	849.23902	0.68929	0.00058607	-0.30087	-0.00025581	0.38843	0.00033026	850.2459644315433	32.614	0.72056	32.234	31.897	32.618	-0.37924					34	13	3	0	0	0	0.88026	1	11828	11828		0	0	1	29473000	+		26050	15034	16577	16665	25029	25029					-0.19163040209161863
QHPCQCMGCC	10	Unmodified	_QHPCQCMGCC_					0	0	0			REV__ENST00000299299.3_1_10:72643480-72643579:-|nuORF	REV__ENST00000299299.3_1_10:72643480-72643579:-|nuORF	MSMS	HCT116MG_D190212_S2	2	555.1769409179688	2	555.176317	1108.33808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3365	1	1.3233	0.82329	1.8233	-0.013221								0	0	0	0.97116	1	437	437		0	0	1		+		26051	14774	16578	16666	25030	25030					-0.21175385306560202
QHPCQCMGCC	10	Unmodified	_QHPCQCMGCC_					0	0	0			REV__ENST00000299299.3_1_10:72643480-72643579:-|nuORF	REV__ENST00000299299.3_1_10:72643480-72643579:-|nuORF	MSMS	HCT116MG_D190212_S3	3	555.1764526367188	2	555.176317	1108.33808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7911	1	1.852	1.352	2.352	0.060905								0	0	0	0.97116	1	557	557		0	0	1		+		26052	14774	16578	16666	25031	25031					-0.21175385306560202
QHQFRKWARRL	11	Unmodified	_QHQFRKWARRL_					0	0	0			REV__ENSG00000221937|ENST00000408947|TAS2R40	REV__ENSG00000221937|ENST00000408947|TAS2R40	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.3124694824219	3	509.291887	1524.85383	0.48636	0.0002477	-2.6118	-0.0013301	-2.1254	-0.0010824	509.29084804215944	54.111	0.30726	54.111	53.924	54.231	0					12	5	3	0	0	0	0.36627	1	20673	20673		0.50596	0	1	12677000	+		26053	14291	16579	16667	25032	25032					0.11239954853681411
QHRWCPHHRDR	11	Unmodified	_QHRWCPHHRDR_					0	0	0			REV__IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	REV__IRF2BP1|p.P446Afs*134|1|0.22|ENSG00000170604|chr19:45884439-45884440|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	509.9129638671875	3	509.913082	1526.71742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.023	1	11.023	10.523	11.523	0								0	0	0	0.96208	1	3432	3432		0	0	1		+		26054	16907	16580	16668	25033	25033					-0.024874826485074664
QHTQKVFHYLE	11	Unmodified	_QHTQKVFHYLE_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	HCT116MG_D190212_S4	4	477.7265319824219	3	477.245609	1428.715	0.5047	0.00024086	4.2655	0.0020357	4.7702	0.0022765	477.58236015492656	20.614	0.25994	20.412	20.248	20.508	-0.20133					6	4	2	0	0	0	0.74191	1	7064	7064		1.9275	0.71267	1	1881100	+		26055	12486	16581	16669	25034	25034					0.01778947374850759
QHYRESYISDE	11	Unmodified	_QHYRESYISDE_					0	0	0		nc|ENSG00000153303|Q8N878-2|FRMD1;ENSG00000153303|ENST00000283309|FRMD1	nc|ENSG00000153303|Q8N878-2|FRMD1	nc|ENSG00000153303|Q8N878-2|FRMD1	MSMS	HCT116MG_D190212_S1	1	713.8135375976562	2	713.815313	1425.61607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.862	1	31.862	31.362	32.362	0								0	0	0	0.94538	1	11738	11738		8.7454	0.58988	1				26056	4188	16582	16670	25035	25035					-0.07971120380739194
QHYRFHTGEK	10	Unmodified	_QHYRFHTGEK_					0	0	0		ENSG00000144026|ENST00000295208|ZNF514	ENSG00000144026|ENST00000295208|ZNF514	ENSG00000144026|ENST00000295208|ZNF514	MSMS	HCT116MG_D190212_S3	3	435.2350769042969	3	434.882782	1301.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2875	1	4.3163	3.8163	4.8163	0.028732								0	0	0	0.96521	1	1295	1295		0.56317	0.42328	1				26057	3845	16583	16671	25036	25036					-0.012230481449705621
QIARPIIGKQG	11	Unmodified	_QIARPIIGKQG_					0	0	0			REV__KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant	REV__KIF27|p.M726Nfs*7|1|0.18|ENSG00000165115|chr9:83887103-83887104|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	590.8599243164062	2	590.861672	1179.70879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.652	1	51.302	50.802	51.802	-0.35028								0	0	0	0.95196	1	19230	19230		5.2969	0.96765	1		+		26058	13033	16584	16672	25037	25037					0.12612473933995716
QIDAMDRPV	9	Unmodified	_QIDAMDRPV_					0	0	0		nc|ENSG00000164509|Q8NI17-8|IL31RA	nc|ENSG00000164509|Q8NI17-8|IL31RA	nc|ENSG00000164509|Q8NI17-8|IL31RA	MULTI-SECPEP	HCT116MG_D190212_S1	1	522.7588500976562	2	522.760766	1043.50698	0.44007	0.00023005	-2.7482	-0.0014367	-2.3081	-0.0012066	523.2612606324229	34.547	0.20805	34.547	34.389	34.597	0					5	3	2	0	0	0	0.2622	1	12840	12840		0.52476	0.066424	1	16232000			26059	9526	16585	16673	25038	25038					-0.013033778139060814
QIDYYDERR	9	Unmodified	_QIDYYDERR_					0	0	0			REV__USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant	REV__USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	419.8670349121094	3	419.866798	1256.57856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.704	1	13.541	13.041	14.041	-0.16233								0	0	0	0.77018	1	4308	4308		0.26902	0	1		+		26060	13924	16586	16674	25039	25039					-0.03946166855689626
QIEALVINA	9	Unmodified	_QIEALVINA_					0	0	0			REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	970.5577392578125	1	970.556773	969.549496	0.52595	0.00051047	0.72133	0.0007001	1.2473	0.0012106	970.5570540252533	51.51	0.2101	51.199	51.067	51.277	-0.31166					6	3	2	0	0	0	0.069315	1	19481	19481		65.235	12.967	1	4218400	+		26061	10432	16587	16675	25040	25040					0.0635034058598194
QIEALVINA	9	Unmodified	_QIEALVINA_					0	0	0			REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	REV__E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	970.556773	969.549496	0.52595	0.00051047	0.72133	0.0007001	1.2473	0.0012106	970.5570540252533	51.51	0.2101	51.199	51.067	51.277	-0.31166	0.026572	-0.00074829	NaN	65.235	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4218400	+		26062	10432	16587	16675							0.0635034058598194
QIEEAGWSY	9	Unmodified	_QIEEAGWSY_					0	0	0		nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF	nc|ENSG00000152556|P08237-2|PFKM	nc|ENSG00000152556|P08237-2|PFKM	MULTI-MSMS	HCT116MG_D190212_S1	1	1082.4798583984375	1	1082.47892	1081.47164	0.54501	0.00058996	-0.16356	-0.00017704	0.38145	0.00041291	1082.4786436820552	44.679	0.20826	44.679	44.568	44.777	0					5	3	2	0	0	0	0.003706	1	16926	16926		155.03	80.603	1	10183000			26063	4154	16588	16676	25041	25041					-0.06583717070043349
QIEEAGWSY	9	Unmodified	_QIEEAGWSY_					0	0	0		nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF	nc|ENSG00000152556|P08237-2|PFKM	nc|ENSG00000152556|P08237-2|PFKM	MULTI-MSMS	HCT116MG_D190212_S2	2	1082.479248046875	1	1082.47892	1081.47164	0.71732	0.00077648	-0.29564	-0.00032003	0.42168	0.00045645	1082.4784367541301	44.699	0.26095	44.614	44.482	44.743	-0.084797					8	4	2	0	0	0	0.0042464	1	17007	17007		147.06	72.636	1	20492000			26064	4154	16588	16676	25042	25042					-0.06583717070043349
QIGDFLVKV	9	Unmodified	_QIGDFLVKV_					0	0	0		ENST00000506579.5_1_5:140057288-140057606:-|nuORF;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-2|HARS1;nc|ENSG00000170445|P12081-4|HARS1;ENSG00000170445|ENST00000504156|HARS1	ENST00000506579.5_1_5:140057288-140057606:-|nuORF	ENST00000506579.5_1_5:140057288-140057606:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	509.8003845214844	2	509.800217	1017.58588	0.22504	0.00011472	2.7867	0.0014207	3.0117	0.0015354	509.80165297534774	53.831	0.7212	53.641	53.018	53.739	-0.1894					17	13	2	0	0	0	0.014023	1	20724	20724		103.42	55.671	1	17665000			26065	5130	16589	16677	25043	25043					0.07779217482720924
QIGSVTFYP	9	Unmodified	_QIGSVTFYP_					0	0	0			REV__ENSG00000129354|ENST00000250244|AP1M2	REV__ENSG00000129354|ENST00000250244|AP1M2	MSMS	HCT116MG_D190212_S1	1	506.2587585449219	2	506.260925	1010.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.506	1	18.506	18.006	19.006	0								0	0	0	0.76603	1	6365	6365		14.838	2.3067	1		+		26066	11891	16590	16678	25044	25044					0.0024636517761109644
QIHVVQKRK	9	Unmodified	_QIHVVQKRK_					0	0	0			REV__ENST00000262467.9_2_17:5404862-5404970:-|nuORF	REV__ENST00000262467.9_2_17:5404862-5404970:-|nuORF	MSMS	HCT116MG_D190212_S4	4	379.2402038574219	3	379.24013	1134.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.357	1	54.034	53.534	54.534	-0.32349								0	0	0	0.76995	1	20322	20322		1.0715	0	1		+		26067	14639	16591	16679	25045	25045					0.13659910999399472
QIHYILKP	8	Unmodified	_QIHYILKP_					0	0	0		ENST00000464269.5_1_20:13773870-13789559:+|nuORF;nc|ENSG00000101247|Q5TEU4-2|NDUFAF5;ENSG00000101247|ENST00000378106|NDUFAF5	ENST00000464269.5_1_20:13773870-13789559:+|nuORF	ENST00000464269.5_1_20:13773870-13789559:+|nuORF	MSMS	HCT116MG_D190212_S4	4	506.3039245605469	2	506.302927	1010.5913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.199	1	45.826	45.326	46.326	-0.37206								0	0	0	0.8837	1	17058	17058		5.2307	0	1				26068	1768	16592	16680	25046	25046					0.086429410651931
QIIHIITLL	9	Unmodified	_QIIHIITLL_					0	0	0			REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MSMS	HCT116MG_D190212_S2	2	355.23297119140625	3	355.233982	1062.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.011	1	37.918	37.418	38.418	-0.09301								0	0	0	0.76677	1	14267	14267		12.241	0	1		+		26069	9822	16593	16681	25047	25047					0.15128356304853696
QIILQWKKVRR	11	Unmodified	_QIILQWKKVRR_					0	0	0			REV__B3GNT5|p.W32Gfs*9|1|0.33|ENSG00000176597|chr3:183269886-183269886|T/-|frameshift_variant	REV__B3GNT5|p.W32Gfs*9|1|0.33|ENSG00000176597|chr3:183269886-183269886|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	734.4696044921875	2	734.46717	1466.91979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.212	1	47.896	47.396	48.396	-0.31596								0	0	0	0.9598	1	18127	18127		1.1933	0	1		+		26070	10027	16594	16682	25048	25048					0.20500350975839865
QILLQQQQRR	10	Unmodified	_QILLQQQQRR_					0	0	0			REV__ENSG00000111052|ENST00000552864|LIN7A	REV__ENSG00000111052|ENST00000552864|LIN7A	MSMS	HCT116MG_D190212_S1	1	655.8840942382812	2	655.88621	1309.75787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.188	1	51.188	50.688	51.688	0								0	0	0	0.95776	1	19550	19550		2.9952	0.26005	1		+		26071	11419	16595	16683	25049	25049					0.11537762222928905
QILSPNLAT	9	Unmodified	_QILSPNLAT_					0	0	0		LRFN5|p.Y455Lfs*2|1|0.36|ENSG00000165379|chr14:41887986-41887987|-/T|frameshift_variant;ENSG00000165379|ENST00000298119|LRFN5	LRFN5|p.Y455Lfs*2|1|0.36|ENSG00000165379|chr14:41887986-41887987|-/T|frameshift_variant	LRFN5|p.Y455Lfs*2|1|0.36|ENSG00000165379|chr14:41887986-41887987|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	478.7744140625	2	478.7742	955.533846	0.073993	3.5426E-05	0.10086	4.8288E-05	0.17485	8.3713E-05	478.7742678570174	36.594	0.31248	36.293	36.145	36.457	-0.30113					7	5	2	0	0	0	0.17622	1	13556	13556		43.772	3.8227	1	2737400			26072	4770	16596	16684	25050	25050					0.054300540689382615
QINLLCID	8	Unmodified	_QINLLCID_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	HCT116MG_D190212_S2	2	466.2497863769531	2	466.249503	930.484453	0.271	0.00012635	-0.994	-0.00046345	-0.723	-0.0003371	466.2497092688305	61.461	1.8385	61.319	60.637	62.475	-0.14227					96	35	4	0	0	0	0.87635	1	24017	24017		0.69038	0	1	7710300	+		26073	11982	16597	16685	25051	25051					0.016430227884711712
QIQEMFDE	8	Unmodified	_QIQEMFDE_					0	0	0		ENST00000515095.5_1_5:96228145-96238354:+|nuORF;ENST00000515387.1_1_5:96232124-96244694:+|nuORF;nc|ENSG00000164308|Q6P179-2|ERAP2;nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2	ENST00000515095.5_1_5:96228145-96238354:+|nuORF	ENST00000515095.5_1_5:96228145-96238354:+|nuORF	MSMS	HCT116MG_D190212_S2	2	520.26025390625	2	520.223682	1038.43281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.442	1	54.252	53.752	54.752	-0.1894								0	0	0	0.65638	1	20960	20960		34.102	3.4659	1				26074	4689	16598	16686	25052	25052					-0.08486765696079601
QIQEPSQID	9	Unmodified	_QIQEPSQID_					0	0	0			REV__ENSG00000112182|ENST00000257749|BACH2	REV__ENSG00000112182|ENST00000257749|BACH2	MULTI-MSMS	HCT116MG_D190212_S3	3	1057.51513671875	1	1057.51603	1056.50875	0.70706	0.00074772	0.11827	0.00012507	0.82533	0.0008728	1057.5162385784956	24.856	0.31207	24.772	24.601	24.913	-0.083694					8	5	2	0	0	0	0.011082	1	8858	8858		110.67	10.584	1	3958400	+		26075	11450	16599	16687	25053	25053					-0.017240455242927055
QIQEPSQID	9	Unmodified	_QIQEPSQID_					0	0	0			REV__ENSG00000112182|ENST00000257749|BACH2	REV__ENSG00000112182|ENST00000257749|BACH2	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2617797851562	2	529.261653	1056.50875	0.51115	0.00027053	-0.058931	-3.119E-05	0.45222	0.00023934	529.2615256033839	24.862	1.3017	24.778	23.925	25.226	-0.083694					44	24	4	0	0	0	0.12421	1	8894	8894		53.404	9.4222	1	74748000	+		26076	11450	16599	16687	25054	25054					-0.017240455242927055
QIQEPSQID	9	Unmodified	_QIQEPSQID_					0	0	0			REV__ENSG00000112182|ENST00000257749|BACH2	REV__ENSG00000112182|ENST00000257749|BACH2	MULTI-MSMS	HCT116MG_D190212_S4	4	529.2615356445312	2	529.261653	1056.50875	0.61766	0.00032691	-0.26938	-0.00014257	0.34828	0.00018433	529.2614285717391	24.992	0.77984	24.714	24.436	25.216	-0.27803					33	14	4	0	0	0	0.066823	1	8817	8817		66.457	2.4962	1	32964000	+		26077	11450	16599	16687	25055	25055					-0.017240455242927055
QIQEPSQID	9	Unmodified	_QIQEPSQID_					0	0	0			REV__ENSG00000112182|ENST00000257749|BACH2	REV__ENSG00000112182|ENST00000257749|BACH2	MULTI-SECPEP	HCT116MG_D190212_S4	4	529.7992553710938	2	529.261653	1056.50875	0.61766	0.00032691	-0.26938	-0.00014257	0.34828	0.00018433	529.2614285717391	24.992	0.77984	24.714	24.436	25.216	-0.27803					33	14	4	0	0	0	0.070542	1	8832	8832		66.457	7.0883	1	32964000	+		26078	11450	16599	16687	25056	25056					-0.017240455242927055
QIQEPSQID	9	Unmodified	_QIQEPSQID_					0	0	0			REV__ENSG00000112182|ENST00000257749|BACH2	REV__ENSG00000112182|ENST00000257749|BACH2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1057.51603	1056.50875	0.70706	0.00074772	0.11827	0.00012507	0.82533	0.0008728	1057.5162385784956	24.856	0.31207	24.772	24.601	24.913	-0.083694	0.063754	-2.1876E-05	NaN	110.67	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3958400	+		26079	11450	16599	16687							-0.017240455242927055
QIQEPSQID	9	Unmodified	_QIQEPSQID_					0	0	0			REV__ENSG00000112182|ENST00000257749|BACH2	REV__ENSG00000112182|ENST00000257749|BACH2	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1057.51603	1056.50875	0.75551	0.00079896	0.46035	0.00048682	1.2159	0.0012858	1057.51627776455	25	0.15598	24.72	24.59	24.746	-0.27958	0.011447	0.00033987	NaN	110.67	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1458900	+		26080	11450	16599	16687							-0.017240455242927055
QIQFADQKQEF	11	Unmodified	_QIQFADQKQEF_					0	0	0		nc|ENSG00000158467|Q96HN2-3|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2	nc|ENSG00000158467|Q96HN2-3|AHCYL2	nc|ENSG00000158467|Q96HN2-3|AHCYL2	MSMS	HCT116MG_D190212_S4	4	691.3400268554688	2	691.340966	1380.66738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.239	1	31.864	31.364	32.364	-0.37529								0	0	0	0.95196	1	11734	11734		5.2969	0	1				26081	4373	16600	16688	25057	25057					-0.007727516160457526
QIQLEYRFKRN	11	Unmodified	_QIQLEYRFKRN_					0	0	0			REV__nc|ENSG00000292332|P26951-2|IL3RA	REV__nc|ENSG00000292332|P26951-2|IL3RA	MSMS	HCT116MG_D190212_S3	3	747.9130249023438	2	747.912424	1493.8103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.49	1	44.182	43.682	44.682	-0.30759								0	0	0	0.95636	1	16633	16633		2.9952	0	1		+		26082	13839	16601	16689	25058	25058					0.08314300565848498
QISATAVAQL	10	Unmodified	_QISATAVAQL_					0	0	0		nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2	nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2	nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2	MSMS	HCT116MG_D190212_S2	2	501.283935546875	2	501.284931	1000.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.961	1	38.876	38.376	39.376	-0.084618								0	0	0	0.89062	1	14649	14649		17.113	0.1706	1				26083	9645	16602	16690	25059	25059					0.055054390976465584
QISAWSLLP	9	Unmodified	_QISAWSLLP_					0	0	0			REV__ENST00000547808.5_1_12:57033849-57039747:-|nuORF	REV__ENST00000547808.5_1_12:57033849-57039747:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1014.5833740234375	1	1014.56186	1013.55458	0.68872	0.00069875	-0.028395	-2.8809E-05	0.66032	0.00066994	1014.56196736232	54.979	0.25521	54.791	54.662	54.918	-0.18797					8	4	2	0	0	0	0.19461	1	21157	21157		41.84	41.84	1	20715000	+		26084	16412	16603	16691	25060	25060					0.04834644448601466
QISIRGIVGV	10	Unmodified	_QISIRGIVGV_					0	0	0		PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	PYGL|p.T677Qfs*4|1|0.33|ENSG00000100504|chr14:50910044-50910044|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	521.3251342773438	2	521.324391	1040.63423	0.28645	0.00014933	0.43609	0.00022735	0.72254	0.00037668	521.324709702555	50.285	0.20642	50.113	49.985	50.191	-0.1719					5	3	2	0	0	0	0.48137	1	19296	19296		36.506	3.7205	1	14559000			26085	1715	16604	16692	25061	25061					0.11553711122587629
QISSKWQP	8	Unmodified	_QISSKWQP_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	MSMS	HCT116MG_D190212_S2	2	487.2570495605469	2	487.258717	972.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.135	1	25.773	25.273	26.273	-0.36164								0	0	0	0.85589	1	9442	9442		18.135	1.1927	1		+		26086	13819	16605	16693	25062	25062					0.015529007547115725
QISVEQSI	8	Unmodified	_QISVEQSI_					0	0	0		ENST00000493538.5_1_2:25803688-25875529:-|nuORF;ENST00000472690.5_1_2:25819066-25872751:-|nuORF;nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB	ENST00000493538.5_1_2:25803688-25875529:-|nuORF	ENST00000493538.5_1_2:25803688-25875529:-|nuORF	MSMS	HCT116MG_D190212_S4	4	452.2424011230469	2	452.242732	902.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.426	1	37.042	36.542	37.542	-0.3839								0	0	0	0.67883	1	13734	13734		32.305	0.18852	1				26087	3532	16606	16694	25063	25063					0.0157748828091826
QIVFIVFGVLM	11	Unmodified	_QIVFIVFGVLM_					0	0	0		MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant;MFSD6|p.L503Hfs*56|1|0.33|ENSG00000151690|chr2:190437536-190437555|CTTATTGAATTGATCGGCCA/-|frameshift_variant;ENSG00000151690|ENST00000392328|MFSD6	MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant	MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	633.9119262695312	2	633.369952	1264.72535	0.34309	0.0002173	-0.93677	-0.00059332	-0.59368	-0.00037602	633.3690517924375	50.869	1.2443	50.514	49.901	51.145	-0.35483					39	23	3	0	0	0	0.74191	1	18833	18833		1.3295	0	1	8556400			26088	4123	16607	16695	25064	25064					0.10357838775735217
QIYKWRNLQQY	11	Unmodified	_QIYKWRNLQQY_					0	0	0			REV__ENSG00000169836|ENST00000304883|TACR3	REV__ENSG00000169836|ENST00000304883|TACR3	MSMS	HCT116MG_D190212_S2	2	770.4064331054688	2	770.406975	1538.7994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.046	1	43.968	43.468	44.468	-0.078373								0	0	0	0.94416	1	16718	16718		9.3831	3.6513	1		+		26089	13263	16608	16696	25065	25065					0.05154898191608481
QKAQKKKKL	9	Unmodified	_QKAQKKKKL_					0	0	0			REV__nc|ENSG00000111912|Q8NI08-6|NCOA7	REV__nc|ENSG00000111912|Q8NI08-6|NCOA7	MULTI-MSMS	HCT116MG_D190212_S2	2	550.369384765625	2	550.369133	1098.72371	0.39251	0.00021602	-0.21845	-0.00012023	0.17406	9.5798E-05	550.3689708755921	19.388	0.20867	19.018	18.888	19.096	-0.3695					5	3	2	0	0	0	0.74287	1	6750	6750		3.9444	0.66309	1	7894700	+		26090	11441	16609	16697	25066	25066					0.17829965801979597
QKEDDDEPR	9	Unmodified	_QKEDDDEPR_					0	0	0			REV__ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	REV__ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	565.7938232421875	2	566.249274	1130.484	0.44516	0.00025207	-1.5303	-0.00086655	-1.0852	-0.00061448	566.2482599594967	17.51	0.15681	17.161	17.03	17.187	-0.34933					4	2	2	0	0	0	0.25004	1	5964	5964		10.824	0	1	1494300	+		26091	11992	16610	16698	25067	25067					-0.07602725397669019
QKEIHRKV	8	Unmodified	_QKEIHRKV_					0	0	0		nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136269117-136269381:-|nuORF	nc|ENSG00000145907|Q13283-2|G3BP1	nc|ENSG00000145907|Q13283-2|G3BP1	MSMS	HCT116MG_D190212_S1	1	519.31298828125	2	519.314358	1036.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.539	1	37.539	37.039	38.039	0								0	0	0	0.8837	1	14028	14028		2.3027	0	1				26092	3929	16611	16699	25068	25068					0.09731960182648436
QKELKYMNKHI	11	Unmodified	_QKELKYMNKHI_					0	0	0			REV__FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant	REV__FSD2|p.G549Afs*4|4|0.39|ENSG00000186628|chr15:82765939-82765939|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	716.3942260742188	2	716.392479	1430.7704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.44	1	26.078	25.578	26.578	-0.36164								0	0	0	0.88801	1	9566	9566		21.537	1.1224	1		+		26093	13893	16612	16700	25069	25069					0.07225037570947279
QKIHSGDRP	9	Unmodified	_QKIHSGDRP_					0	0	0		ENSG00000183309|ENST00000526926|ZNF623;nc|ENSG00000183309|O75123|ZNF623	ENSG00000183309|ENST00000526926|ZNF623	ENSG00000183309|ENST00000526926|ZNF623	MULTI-MSMS	HCT116MG_D190212_S2	2	519.284912109375	2	519.277972	1036.54139	0.44866	0.00023298	2.1213	0.0011015	2.5699	0.0013345	519.2791730498535	40.385	0.25919	40.314	40.156	40.415	-0.071056					7	4	2	0	0	0	0.53593	1	15170	15170		14.838	4.0143	1	15790000			26094	5711	16613	16701	25070	25070					0.024582063892466977
QKIHSGDRP	9	Unmodified	_QKIHSGDRP_					0	0	0		ENSG00000183309|ENST00000526926|ZNF623;nc|ENSG00000183309|O75123|ZNF623	ENSG00000183309|ENST00000526926|ZNF623	ENSG00000183309|ENST00000526926|ZNF623	MULTI-MATCH	HCT116MG_D190212_S4	4		2	519.277972	1036.54139	0.32228	0.00016735	2.6174	0.0013592	2.9397	0.0015265	519.2793726963544	40.716	0.23582	40.338	40.182	40.418	-0.37828	0.0053572	1.3202E-06	NaN	14.838	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2600600			26095	5711	16613	16701							0.024582063892466977
QKINKRST	8	Unmodified	_QKINKRST_					0	0	0			REV__ENST00000264433.10_2_4:159828073-159828154:+|nuORF	REV__ENST00000264433.10_2_4:159828073-159828154:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	487.7906188964844	2	487.790715	973.566878	0.24661	0.00012029	0.74106	0.00036148	0.98767	0.00048178	487.79092619878463	51.995	0.42096	51.995	51.652	52.073	0					11	7	2	0	0	0	0.83066	1	19882	19882		7.9102	0.62092	1	30257000	+		26096	14666	16614	16702	25071	25071					0.0790368091164737
QKIVQVLKSI	10	Unmodified	_QKIVQVLKSI_					0	0	0			REV__ENST00000284073.6_1_17:55759113-55759179:+|nuORF	REV__ENST00000284073.6_1_17:55759113-55759179:+|nuORF	MSMS	HCT116MG_D190212_S2	2	578.3746337890625	2	578.376623	1154.73869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.414	1	39.336	38.836	39.836	-0.077835								0	0	0	0.92607	1	14833	14833		10.074	0.6908	1		+		26097	14728	16615	16703	25072	25072					0.16751412879307281
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S1	1	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5986	1	2.5986	2.0986	3.0986	0								0	0	0	0.77019	1	775	775		0.23584	0	1				26098	1245	16616	16704	25073	25073					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S1	1	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6412	1	4.6412	4.1412	5.1412	0								0	0	0	0.77019	1	1390	1390		0.23584	0	1				26099	1245	16616	16704	25074	25074					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S1	1	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6855	1	7.6855	7.1855	8.1855	0								0	0	0	0.77019	1	2322	2322		0.23584	0	1				26100	1245	16616	16704	25075	25075					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S1	1	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.488	1	18.488	17.988	18.988	0								0	0	0	0.76995	1	6357	6357		1.0715	0	1				26101	1245	16616	16704	25076	25076					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S1	1	391.2842712402344	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.063	1	19.063	18.563	19.563	0								0	0	0	0.76995	1	6589	6589		1.0715	0	1				26102	1245	16616	16704	25077	25077					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S1	1	391.2840881347656	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.66	1	19.66	19.16	20.16	0								0	0	0	0.76995	1	6830	6830		1.0715	0	1				26103	1245	16616	16704	25078	25078					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S1	1	391.2843322753906	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.275	1	20.275	19.775	20.775	0								0	0	0	0.76995	1	7077	7077		1.0715	0	1				26104	1245	16616	16704	25079	25079					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S1	1	391.2842712402344	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.463	1	26.463	25.963	26.963	0								0	0	0	0.77019	1	9563	9563		0.23584	0	1				26105	1245	16616	16704	25080	25080					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S1	1	391.2843017578125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.281	1	29.281	28.781	29.781	0								0	0	0	0.77019	1	10696	10696		0.23584	0	1				26106	1245	16616	16704	25081	25081					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S2	2	391.284423828125	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.878	1	56.699	56.199	57.199	-0.17904								0	0	0	0.77019	1	21952	21952		0.23584	0	1				26107	1245	16616	16704	25082	25082					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S3	3	391.2840576171875	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.851	1	22.832	22.332	23.332	-0.018869								0	0	0	0.77019	1	8038	8038		0.23584	0	1				26108	1245	16616	16704	25083	25083					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S3	3	391.28424072265625	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.36	1	26.21	25.71	26.71	-0.14924								0	0	0	0.77019	1	9453	9453		0.23584	0	1				26109	1245	16616	16704	25084	25084					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S3	3	391.2840881347656	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.95	1	29.714	29.214	30.214	-0.23655								0	0	0	0.76995	1	10898	10898		1.0715	0	1				26110	1245	16616	16704	25085	25085					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S3	3	391.2841491699219	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.02	1	31.741	31.241	32.241	-0.27841								0	0	0	0.76995	1	11720	11720		1.0715	0	1				26111	1245	16616	16704	25086	25086					0.25026506998392506
QKKKKKKKK	9	Unmodified	_QKKKKKKKK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S4	4	391.2842102050781	3	391.283559	1170.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1075	1	2.8429	2.3429	3.3429	-0.26456								0	0	0	0.77019	1	952	952		0.23584	0	1				26112	1245	16616	16704	25087	25087					0.25026506998392506
QKKKYRRRRHL	11	Unmodified	_QKKKYRRRRHL_					0	0	0			REV__ENSG00000184564|ENST00000647374|SLITRK6	REV__ENSG00000184564|ENST00000647374|SLITRK6	MULTI-SECPEP	HCT116MG_D190212_S1	1	524.3711547851562	3	523.662203	1567.96478	0.28064	0.00014696	0.3797	0.00019883	0.66034	0.0003458	523.6623067503273	60.958	1.705	60.958	60.491	62.196	0					48	32	2	0	0	0	0.36631	1	23960	23960		0.094841	0.094841	1	23776000	+		26113	13805	16617	16705	25088	25088					0.2035159456177098
QKKLKKKKKKK	11	Unmodified	_QKKLKKKKKKK_					0	0	0		ENST00000378026.4_3_12:106631761-106631812:-|nuORF	ENST00000378026.4_3_12:106631761-106631812:-|nuORF	ENST00000378026.4_3_12:106631761-106631812:-|nuORF	MSMS	HCT116MG_D190212_S2	2	706.75048828125	2	707.011213	1412.00787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.762	1	32.551	32.051	33.051	-0.21135								0	0	0	0.96208	1	12133	12133		0	0	1				26114	7537	16618	16706	25089	25089					0.31834971566468084
QKKQKQKFFFF	11	Unmodified	_QKKQKQKFFFF_					0	0	0			REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MSMS	HCT116MG_D190212_S1	1	752.4274291992188	2	752.427179	1502.8398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.614	1	41.614	41.114	42.114	0								0	0	0	0.95636	1	15674	15674		2.9952	0	1		+		26115	14944	16619	16707	25090	25090					0.10849864582019109
QKKSHILETW	10	Unmodified	_QKKSHILETW_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MSMS	HCT116MG_D190212_S1	1	635.3509521484375	2	635.351137	1268.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.427	1	27.427	26.927	27.927	0								0	0	0	0.90892	1	9951	9951		13.906	3.0821	1		+		26116	12937	16620	16708	25091	25091					0.06412463834476512
QKLKRLLPI	9	Unmodified	_QKLKRLLPI_					0	0	0		ASZ1|p.T33M|1|0.45|ENSG00000154438|chr7:117427363-117427363|G/A|missense_variant;nc|ENSG00000154438|Q8WWH4-2|ASZ1;ENSG00000154438|ENST00000284629|ASZ1	ASZ1|p.T33M|1|0.45|ENSG00000154438|chr7:117427363-117427363|G/A|missense_variant	ASZ1|p.T33M|1|0.45|ENSG00000154438|chr7:117427363-117427363|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	370.2583312988281	3	370.257009	1107.7492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.132	1	36.831	36.331	37.331	-0.30137								0	0	0	0.77018	1	13744	13744		0.26902	0	1				26117	208	16621	16709	25092	25092					0.1996344032440902
QKLMRLQNLR	10	Unmodified	_QKLMRLQNLR_					0	0	0		FTHL17|p.A67T|1|0.3|ENSG00000132446|chrX:31071755-31071755|C/T|missense_variant;ENSG00000132446|ENST00000359202|FTHL17	FTHL17|p.A67T|1|0.3|ENSG00000132446|chrX:31071755-31071755|C/T|missense_variant	FTHL17|p.A67T|1|0.3|ENSG00000132446|chrX:31071755-31071755|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	650.3876342773438	2	650.387531	1298.76051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.555	1	21.17	20.67	21.67	-0.38503								0	0	0	0.92607	1	7592	7592		10.074	0	1				26118	3185	16622	16710	25093	25093					0.12307894356240467
QKLNLIENQHL	11	Unmodified	_QKLNLIENQHL_					0	0	0			REV__nc|ENSG00000172765|O94876-2|TMCC1	REV__nc|ENSG00000172765|O94876-2|TMCC1	MSMS	HCT116MG_D190212_S1	1	675.53759765625	2	675.380426	1348.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.743	1	42.743	42.243	43.243	0								0	0	0	0.95196	1	16130	16130		5.2969	0	1		+		26119	13402	16623	16711	25094	25094					0.08587520408946148
QKLRWYFKLYD	11	Unmodified	_QKLRWYFKLYD_					0	0	0		ENSG00000048545|ENST00000372958|GUCA1A	ENSG00000048545|ENST00000372958|GUCA1A	ENSG00000048545|ENST00000372958|GUCA1A	MSMS	HCT116MG_D190212_S1	1	780.4261474609375	2	780.422094	1558.82963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.426	1	32.426	31.926	32.926	0								0	0	0	0.95636	1	11965	11965		2.9952	0.49676	1				26120	1034	16624	16712	25095	25095					0.07257256856792083
QKLTKIICA	9	Unmodified	_QKLTKIICA_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-2|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MSMS	HCT116MG_D190212_S4	4	509.4618225097656	2	509.309895	1016.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.488	1	49.126	48.626	49.626	-0.36213								0	0	0	0.76818	1	18358	18358		7.2892	1.5574	1				26121	3956	16625	16713	25096	25096					0.09759850501961864
QKPDDAQYY	9	Unmodified	_QKPDDAQYY_					0	0	0		ENST00000607588.1_1_13:52743381-52745380:-|nuORF;ENST00000527128.5_1_9:100000750-100013832:+|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENST00000607588.1_1_13:52743381-52745380:-|nuORF	ENST00000607588.1_1_13:52743381-52745380:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	564.23583984375	2	564.253828	1126.4931	0.30222	0.00017053	2.3236	0.0013111	2.6258	0.0014816	564.2548380416952	38.575	0.20774	38.274	38.092	38.3	-0.30137					5	3	2	0	0	0	0.21838	1	14257	14257		26.884	1.8927	1	3807700			26122	4772	16626	16714	25097	25097					-0.06508332041335052
QKQKKAPGRV	10	Unmodified	_QKQKKAPGRV_					0	0	0			REV__ENSG00000124228|ENST00000618172|DDX27	REV__ENSG00000124228|ENST00000618172|DDX27	MULTI-SECPEP	HCT116MG_D190212_S2	2	380.2278747558594	3	380.571768	1138.69348	0.11936	4.5424E-05	-0.32907	-0.00012523	-0.20971	-7.981E-05	380.57152786847143	36.225	0.20673	36.097	35.967	36.174	-0.12799					5	3	2	0	0	0	0.31196	1	13500	13500		0.77653	0.14971	1	13029000	+		26123	11782	16627	16715	25098	25098					0.12967607136783954
QKQQLCAT	8	Unmodified	_QKQQLCAT_					0	0	0			REV__ENST00000593466.5_1_19:17420363-17424875:+|nuORF	REV__ENST00000593466.5_1_19:17420363-17424875:+|nuORF	MSMS	HCT116MG_D190212_S3	3	460.2377014160156	2	460.236927	918.459301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.387	1	24.303	23.803	24.803	-0.083694								0	0	0	0.81076	1	8658	8658		21.747	0.87544	1		+		26124	16706	16628	16716	25099	25099					-0.0031903201407885717
QKQQQLLAL	9	Unmodified	_QKQQQLLAL_					0	0	0		CASR|p.P935L|1|0.25|ENSG00000036828|chr3:122284758-122284758|C/T|missense_variant	CASR|p.P935L|1|0.25|ENSG00000036828|chr3:122284758-122284758|C/T|missense_variant	CASR|p.P935L|1|0.25|ENSG00000036828|chr3:122284758-122284758|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	535.3228759765625	2	535.321848	1068.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.618	1	42.618	42.118	43.118	0								0	0	0	0.7694	1	16079	16079		0.6015	0	1				26125	331	16629	16717	25100	25100					0.09757407259985484
QKRKKKKKKRP	11	Unmodified	_QKRKKKKKKRP_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MSMS	HCT116MG_D190212_S4	4	485.00506591796875	3	485.003566	1451.98887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.888	1	13.726	13.226	14.226	-0.16233								0	0	0	0.9619	1	4375	4375		0.094841	0	1		+		26126	10648	16630	16718	25101	25101					0.2809543499542997
QKRRRRRMLWH	11	Unmodified	_QKRRRRRMLWH_					0	0	0			REV__ENSG00000167543|ENST00000301057|TP53I13	REV__ENSG00000167543|ENST00000301057|TP53I13	MSMS	HCT116MG_D190212_S1	1	812.051513671875	2	811.973493	1621.93243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.054	1	17.054	16.554	17.554	0								0	0	0	0.96208	1	5780	5780		0	0	1		+		26127	13150	16631	16719	25102	25102					0.14634483887130045
QKRRVYRRKRS	11	Unmodified	_QKRRVYRRKRS_					0	0	0		ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	HCT116MG_D190212_S2	2	511.6501770019531	3	511.650075	1531.92839	0.36386	0.00018617	0.1828	9.3527E-05	0.54666	0.0002797	511.65004858280383	56.978	0.67724	56.799	56.582	57.259	-0.17904					39	12	4	0	0	0	0.74191	1	21985	21985		0.08335	0.010087	1	52415000			26128	2639	16632	16720	25103	25103					0.1837071766506142
QKVRRRRRCPY	11	Unmodified	_QKVRRRRRCPY_					0	0	0			REV__ENST00000296325.9_1_4:3514703-3533784:-|nuORF	REV__ENST00000296325.9_1_4:3514703-3533784:-|nuORF	MSMS	HCT116MG_D190212_S1	1	759.4398193359375	2	759.438952	1516.86335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.798	1	59.798	59.298	60.298	0								0	0	0	0.96208	1	23047	23047		0	0	1		+		26129	14759	16633	16721	25104	25104					0.12559399867586762
QKYNIVPKRL	10	Unmodified	_QKYNIVPKRL_					0	0	0		tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	tr|U7SUD7|U7SUD7_FUSNUNa+/H+antiporterNhaC-likeC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01195PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	420.25927734375	3	420.25919	1257.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.018	1	58.018	57.518	58.518	0								0	0	0	0.95381	1	22337	22337		3.8763	1.033	1				26130	18476	16634	16722	25105	25105					0.13717333485124072
QLAEALIKV	9	Unmodified	_QLAEALIKV_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MSMS	HCT116MG_D190212_S1	1	492.80865478515625	2	492.808042	983.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.616	1	47.616	47.116	48.116	0								0	0	0	0.76677	1	18097	18097		12.241	2.1667	1				26131	2245	16635	16723	25106	25106					0.10907503999760593
QLAEALIKV	9	Unmodified	_QLAEALIKV_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MSMS	HCT116MG_D190212_S2	2	492.80810546875	2	492.808042	983.601532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.734	1	47.601	47.101	48.101	-0.13281								0	0	0	0.0001246	1	18216	18216		133.05	44.098	1				26132	2245	16635	16723	25107	25107					0.10907503999760593
QLAEEFLEMGQ	11	Unmodified	_QLAEEFLEMGQ_					0	0	0			REV__ENSG00000148343|ENST00000684074|MIGA2	REV__ENSG00000148343|ENST00000684074|MIGA2	MULTI-MSMS	HCT116MG_D190212_S2	2	648.3031005859375	2	647.802828	1293.5911	0.89696	0.00058105	-2.9258	-0.0018953	-2.0288	-0.0013143	648.3021249717674	31.612	0.25963	31.363	31.198	31.458	-0.24883					6	4	2	0	0	0	0.62391	1	11689	11689		32.786	10.049	1	19934000	+		26133	12539	16636	16724	25108	25108					-0.04394891507649845
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;DDX11|p.G621Vfs*32|1|0.1|ENSG00000013573|chr12:31097979-31097979|G/-|frameshift_variant;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000013573|Q96FC9|DDX11	nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	MULTI-SECPEP	HCT116MG_D190212_S1	1	536.16552734375	2	535.785099	1069.55564	0.35144	0.0001883	-0.0015018	-8.0466E-07	0.34994	0.00018749	535.7849736677261	43.192	0.26123	43.192	43.003	43.264	0					9	4	3	0	0	0	0.19551	1	16313	16313		20.454	15.223	1	11159000			26134	9633	16637	16725	25109	25109					0.023648588175319674
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;DDX11|p.G621Vfs*32|1|0.1|ENSG00000013573|chr12:31097979-31097979|G/-|frameshift_variant;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000013573|Q96FC9|DDX11	nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	MULTI-MSMS	HCT116MG_D190212_S2	2	535.7850341796875	2	535.785099	1069.55564	0.016155	8.6554E-06	-0.059167	-3.1701E-05	-0.043013	-2.3046E-05	535.7848885950095	43.175	0.2574	43.102	42.943	43.2	-0.073376					10	4	3	0	0	0	0.0062667	1	16367	16367		126.57	51.637	1	51579000			26135	9633	16637	16725	25110	25110					0.023648588175319674
QLCVSESKCY	10	Unmodified	_QLCVSESKCY_					0	0	0		WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant;ENSG00000165392|ENST00000298139|WRN	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	WRN|p.D1302Ifs*7|1|0.24|ENSG00000165392|chr8:31157445-31157445|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	580.2604370117188	2	580.259742	1158.50493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.27	1	53.081	52.581	53.581	-0.18922								0	0	0	0.94107	1	20482	20482		6.7232	0.51738	1				26136	4771	16638	16726	25111	25111					-0.06798174614004893
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000446039.2_1_7:27309195-27309288:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	536.7990112304688	2	536.797872	1071.58119	0.38311	0.00020565	0.19119	0.00010263	0.5743	0.00030828	536.7979849907712	49.261	0.25833	49.261	49.079	49.337	0					11	4	3	0	0	0	0.0056012	1	18758	18758		132.38	39.214	1	66563000			26137	3451	16639	16727	25112	25112					0.0482628854927043
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000446039.2_1_7:27309195-27309288:-|nuORF	MSMS	HCT116MG_D190212_S2	2	536.7978515625	2	536.797872	1071.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.367	1	49.213	48.713	49.713	-0.15405								0	0	0	0.0047254	1	18892	18892		117.76	35.231	1				26138	3451	16639	16727	25113	25113					0.0482628854927043
QLDEARGLLL	10	Unmodified	_QLDEARGLLL_					0	0	0		ENST00000566703.1_1_16:30776326-30777900:+|nuORF;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40	ENST00000566703.1_1_16:30776326-30777900:+|nuORF	ENST00000566703.1_1_16:30776326-30777900:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	564.3251342773438	2	564.324588	1126.63462	0.19283	0.00010882	-0.047287	-2.6685E-05	0.14555	8.2136E-05	564.3247308612309	50.927	0.25856	50.927	50.781	51.04	0					7	4	2	0	0	0	0.0163	1	19472	19472		128.93	21.745	1	7779100			26139	1902	16640	16728	25114	25114					0.07637086051818187
QLDEARGLLL	10	Unmodified	_QLDEARGLLL_					0	0	0		ENST00000566703.1_1_16:30776326-30777900:+|nuORF;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40	ENST00000566703.1_1_16:30776326-30777900:+|nuORF	ENST00000566703.1_1_16:30776326-30777900:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	564.3253784179688	2	564.324588	1126.63462	0.42807	0.00024157	0.8287	0.00046765	1.2568	0.00070922	564.3251921277073	51.066	0.31087	50.888	50.758	51.069	-0.17868					7	5	2	0	0	0	0.0163	1	19609	19609		128.93	21.745	1	32222000			26140	1902	16640	16728	25115	25115					0.07637086051818187
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MSMS	HCT116MG_D190212_S1	1	419.218994140625	3	419.219172	1254.63569	-0.012344	-5.1747E-06	-0.050929	-2.135E-05	-0.063272	-2.6525E-05	419.2190762236289	34.015	0.26114	34.015	33.867	34.128	0					11	4	3	0	0	0	0.016744	1	12605	12605		100.71	64.314	1	22773000			26141	5825	16641	16729	25116	25116					0.018553004207433332
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MSMS	HCT116MG_D190212_S1	1	628.3255004882812	2	628.325119	1254.63569	0.69294	0.00043539	-0.34173	-0.00021472	0.35121	0.00022068	628.3248648751522	34.016	0.3134	34.016	33.867	34.181	0					12	5	3	0	0	0	0.0035136	1	12608	12608		168.54	105.96	1	24062000			26142	5825	16641	16729	25117	25117					0.018553004207433332
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MSMS	HCT116MG_D190212_S2	2	628.3251953125	2	628.325119	1254.63569	0.47911	0.00030104	-0.28799	-0.00018095	0.19112	0.00012009	628.3249372533011	34.117	0.51914	33.941	33.76	34.279	-0.17512					19	9	3	0	0	0	0.0043772	1	12683	12683		145.13	82.557	1	168190000			26143	5825	16641	16729	25118	25118					0.018553004207433332
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MSMS	HCT116MG_D190212_S2	2	419.218994140625	3	419.219172	1254.63569	-0.0092539	-3.8794E-06	0.0043821	1.8371E-06	-0.0048718	-2.0424E-06	419.2190468529381	34.117	0.36323	33.941	33.76	34.124	-0.17512					17	6	4	0	0	0	0.030723	1	12685	12685		87.258	62.377	1	117030000			26144	5825	16641	16729	25119	25119					0.018553004207433332
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MSMS	HCT116MG_D190212_S3	3	628.3252563476562	2	628.325119	1254.63569	0.40559	0.00025484	-0.43083	-0.0002707	-0.02524	-1.5859E-05	628.3247367380171	34.4	0.46774	34.105	33.819	34.287	-0.29419					13	8	3	0	0	0	0.012496	1	12661	12661		107.19	52.413	1	17432000			26145	5825	16641	16729	25120	25120					0.018553004207433332
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MSMS	HCT116MG_D190212_S3	3	419.5535583496094	3	419.219172	1254.63569	0.043406	1.8197E-05	-0.29084	-0.00012193	-0.24743	-0.00010373	419.21890768352773	34.385	0.26006	34.091	33.923	34.184	-0.2942					10	4	3	0	0	0	0.041798	1	12663	12663		71.708	45.711	1	14261000			26146	5825	16641	16729	25121	25121					0.018553004207433332
QLDERRLYY	9	Unmodified	_QLDERRLYY_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-MATCH	HCT116MG_D190212_S4	4		2	628.325119	1254.63569	0.2921	0.00018354	-0.35548	-0.00022336	-0.063379	-3.9822E-05	628.3250469855028	34.447	0.15443	34.061	33.984	34.138	-0.38558	0.030339	-1.4915E-05	NaN	168.54	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2599000			26147	5825	16641	16729							0.018553004207433332
QLDKNSEVY	9	Unmodified	_QLDKNSEVY_					0	0	0		ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B	ENST00000305752.4_1_15:38756353-38762648:+|nuORF	ENST00000305752.4_1_15:38756353-38762648:+|nuORF	MSMS	HCT116MG_D190212_S1	1	548.2692260742188	2	548.269478	1094.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.118	1	26.118	25.618	26.618	0								0	0	0	0.017042	1	9423	9423		96.111	39.934	1				26148	5185	16642	16730	25122	25122					-0.019077590072356543
QLDKNSEVY	9	Unmodified	_QLDKNSEVY_					0	0	0		ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B	ENST00000305752.4_1_15:38756353-38762648:+|nuORF	ENST00000305752.4_1_15:38756353-38762648:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	548.7705688476562	2	548.269478	1094.5244	0.37371	0.00020489	-1.0486	-0.00057492	-0.67491	-0.00037003	548.2694816596713	26.448	0.46593	26.086	25.87	26.335	-0.36164					20	8	3	0	0	0	0.0040527	3	9586	9559;9586;9597		149.91	85.678	1	52843000			26149	5185	16642	16730	25123;25124;25125	25124					-0.019077590072356543
QLDNANMPMYD	11	Unmodified	_QLDNANMPMYD_					0	0	0			REV__BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant	REV__BTK|p.A638Efs*11|1|0.06|ENSG00000010671|chrX:101349952-101349952|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	656.2698364257812	2	656.270838	1310.52712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.489	1	37.188	36.688	37.688	-0.30137								0	0	0	0.93749	1	13888	13888		12.873	6.2422	1		+		26150	10062	16643	16731	25126	25126					-0.11571994936230112
QLDPGGGQGPP	11	Unmodified	_QLDPGGGQGPP_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	HCT116MG_D190212_S3	3	511.74932861328125	2	511.748713	1021.48287	0.088871	4.548E-05	0.31669	0.00016206	0.40556	0.00020754	511.74879765483234	20.133	1.0935	20.181	19.843	20.936	0.048107					24	20	2	0	0	0	0.68491	1	7238	7238		26.021	2.2309	1	12022000			26151	819	16644	16732	25127	25127					-0.027008949758851486
QLDPKMSRMHF	11	Unmodified	_QLDPKMSRMHF_					0	0	0		ENST00000369075.7_1_10:121658127-121658223:+|nuORF	ENST00000369075.7_1_10:121658127-121658223:+|nuORF	ENST00000369075.7_1_10:121658127-121658223:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	695.3425903320312	2	695.341932	1388.66931	0.77075	0.00053594	-0.93812	-0.00065232	-0.16737	-0.00011638	695.3412124373601	22.634	1.0291	22.615	21.97	22.999	-0.018869					29	19	2	0	0	0	0.72786	1	7904	7904		11.518	1.3673	1	5354400			26152	7409	16645	16733	25128	25128					-0.009477374034077002
QLDPKMSRMHF	11	Unmodified	_QLDPKMSRMHF_					0	0	0		ENST00000369075.7_1_10:121658127-121658223:+|nuORF	ENST00000369075.7_1_10:121658127-121658223:+|nuORF	ENST00000369075.7_1_10:121658127-121658223:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	695.341932	1388.66931	0.61785	0.00042962	-0.90081	-0.00062637	-0.28296	-0.00019675	695.341520650926	22.983	0.41611	22.598	22.414	22.83	-0.3852	0.0070541	-3.9631E-05	NaN	11.518	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4149400			26153	7409	16645	16733							-0.009477374034077002
QLDPKMSRMHF	11	Unmodified	_QLDPKMSRMHF_					0	0	0		ENST00000369075.7_1_10:121658127-121658223:+|nuORF	ENST00000369075.7_1_10:121658127-121658223:+|nuORF	ENST00000369075.7_1_10:121658127-121658223:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	695.341932	1388.66931	0.77075	0.00053594	-0.93812	-0.00065232	-0.16737	-0.00011638	695.3412124373601	22.634	1.0291	22.615	21.97	22.999	-0.018869	0.024385	-9.1526E-05	NaN	11.518	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5354400			26154	7409	16645	16733							-0.009477374034077002
QLDSAQKNLY	10	Unmodified	_QLDSAQKNLY_					0	0	0		ENST00000522017.5_1_X:46382546-46401540:-|nuORF;KRBOX4|p.T73Pfs*21|1|0.1|ENSG00000147121|chrX:46463266-46463266|G/-|frameshift_variant;ENST00000521626.5_1_X:46382546-46401540:-|nuORF;nc|ENSG00000147121|Q5JUW0-3|KRBOX4;nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4;ENST00000453909.3_1_X:46387515-46388371:-|nuORF;ZNF674|p.A505Pfs*32|1|0.2|ENSG00000251192|chrX:46500077-46500077|T/-|frameshift_variant;nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674	ENST00000522017.5_1_X:46382546-46401540:-|nuORF	ENST00000522017.5_1_X:46382546-46401540:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	590.8057250976562	2	590.303852	1178.59315	0.64135	0.00037859	-0.12808	-7.5605E-05	0.51327	0.00030298	590.8051720579398	30.724	0.17419	30.359	30.287	30.461	-0.36416					8	4	2	0	0	0	0.32703	1	11137	11137		63.961	10.557	1	4817100			26155	3973	16646	16734	25129	25129					0.010999052924944408
QLDSSSSRY	9	Unmodified	_QLDSSSSRY_					0	0	0		COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant	COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	521.744140625	2	521.743628	1041.4727	0.4026	0.00021005	0.3101	0.00016179	0.7127	0.00037184	521.7436800292297	22.15	0.20831	21.765	21.635	21.844	-0.38503					5	3	2	0	0	0	0.28785	1	7863	7863		32.037	7.0465	1	8442600			26156	509	16647	16735	25130	25130					-0.04637502701120866
QLDSSSSRY	9	Unmodified	_QLDSSSSRY_					0	0	0		COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant	COG1|p.F857Sfs*23|1|0.36|ENSG00000166685|chr17:73206210-73206210|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	521.743896484375	2	521.743628	1041.4727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.675	1	21.693	21.193	22.193	0.018446								0	0	0	0.43211	1	7564	7564		32.037	4.8142	1				26157	509	16647	16735	25131	25131					-0.04637502701120866
QLDTHMELY	9	Unmodified	_QLDTHMELY_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-MSMS	HCT116MG_D190212_S2	2	575.2658081054688	2	575.265881	1148.51721	-0.17505	-0.0001007	0.95311	0.00054829	0.77805	0.00044759	575.2666272813664	43.25	0.25776	43.177	43.045	43.303	-0.073372					9	4	3	0	0	0	0.0066233	1	16411	16411		123.45	52.317	1	33737000			26158	2973;9450	16648	16736	25132	25132					-0.05110814879276404
QLDTHMELY	9	Unmodified	_QLDTHMELY_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-MSMS	HCT116MG_D190212_S3	3	575.2659301757812	2	575.265881	1148.51721	0.51733	0.0002976	0.70463	0.00040535	1.222	0.00070295	575.2659823606193	43.525	0.31242	43.219	43.084	43.396	-0.30615					13	5	4	0	0	0	0.0090481	1	16267	16267		115.69	67.346	1	8292100			26159	2973;9450	16648	16736	25133	25133					-0.05110814879276404
QLDTHMELY	9	Unmodified	_QLDTHMELY_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	575.265881	1148.51721	0.41992	0.00024156	-0.015892	-9.1422E-06	0.40403	0.00023242	575.2659464031482	43.632	0.20131	43.258	43.114	43.315	-0.37433	0.039991	-0.00022351	NaN	123.45	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1284900			26160	2973;9450	16648	16736							-0.05110814879276404
QLDVAGRVMQY	11	Unmodified	_QLDVAGRVMQY_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MSMS	HCT116MG_D190212_S1	1	640.3263549804688	2	640.326805	1278.63906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.383	1	42.383	41.883	42.883	0								0	0	0	0.0015795	1	15984	15984		114.19	78.059	1				26161	9557	16649	16737	25134	25134					0.0108822720308126
QLDVAGRVMQY	11	Unmodified	_QLDVAGRVMQY_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-MSMS	HCT116MG_D190212_S2	2	640.3262329101562	2	640.326805	1278.63906	0.49392	0.00031627	-0.31446	-0.00020136	0.17946	0.00011491	640.3264985181053	42.317	0.20655	42.248	42.12	42.327	-0.068199					6	3	2	0	0	0	0.00052105	1	16040	16040		200.32	142.6	1	32411000			26162	9557	16649	16737	25135	25135					0.0108822720308126
QLDVAGRVMQY	11	Unmodified	_QLDVAGRVMQY_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	640.326805	1278.63906	0.4645	0.00029743	-0.46648	-0.0002987	-0.0019831	-1.2699E-06	640.3262312086486	42.304	0.20804	42.304	42.175	42.383	0	0.034779	-0.00021	NaN	200.32	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10957000			26163	9557	16649	16737							0.0108822720308126
QLDVAGRVMQY	11	Unmodified	_QLDVAGRVMQY_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	640.326805	1278.63906	0.61175	0.00039172	1.8242	0.0011681	2.436	0.0015598	640.3271563693967	42.559	0.15664	42.256	42.144	42.301	-0.30352	-0.013795	0.0027236	NaN	200.32	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1463200			26164	9557	16649	16737							0.0108822720308126
QLDYIQYPIL	10	Unmodified	_QLDYIQYPIL_					0	0	0			REV__L1MB4_dup8350|chr19:41723212-41723669:-|1.3793009716132458|0.0459558965036179|4.91|476.0|33|3|anti-sense	REV__L1MB4_dup8350|chr19:41723212-41723669:-|1.3793009716132458|0.0459558965036179|4.91|476.0|33|3|anti-sense	MSMS	HCT116MG_D190212_S2	2	633.3997192382812	2	633.342446	1264.67034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.524	1	44.439	43.939	44.939	-0.084797								0	0	0	0.80906	1	16911	16911		27.629	6.0918	1		+		26165	16942	16650	16738	25136	25136					0.04859123508799712
QLEDGRTL	8	Unmodified	_QLEDGRTL_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MSMS	HCT116MG_D190212_S1	1	466.2455139160156	2	466.245806	930.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.675	1	27.675	27.175	28.175	0								0	0	0	0.023536	1	10052	10052		103.35	17.712	1				26166	3840	16651	16739	25137	25137					0.009040065124395369
QLEDGRTLS	9	Unmodified	_QLEDGRTLS_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S2	2	509.76220703125	2	509.76182	1017.50909	0.42659	0.00021746	-0.10684	-5.4465E-05	0.31974	0.00016299	509.7617567731726	24.536	0.57232	24.156	23.979	24.551	-0.38003					19	10	4	0	0	0	0.012531	1	8797	8797		107.1	39.261	1	115900000			26167	3840	16652	16740	25138	25138					0.0010337419557799876
QLEDGRTLS	9	Unmodified	_QLEDGRTLS_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S2	2	1018.5173950195312	1	1018.51636	1017.50909	0.85697	0.00087284	-0.061834	-6.2979E-05	0.79513	0.00080986	1018.5162921482333	24.541	0.20892	24.161	24.03	24.239	-0.38003					6	3	2	0	0	0	0.0051419	1	8809	8809		136.39	71.157	1	17447000			26168	3840	16652	16740	25139	25139					0.0010337419557799876
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S1	1	648.8074951171875	2	648.806956	1295.59936	0.76231	0.00049459	-0.23893	-0.00015502	0.52338	0.00033957	648.8068827227245	33.582	0.5722	33.582	33.4	33.972	0					38	10	5	0	0	0	3.2446E-15	1	12415	12415		218.93	140.2	1	1237000000			26169	3840	16653	16741	25140	25140					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S1	1	1296.60791015625	1	1296.60664	1295.59936	0.73562	0.00095382	0.097714	0.0001267	0.83334	0.0010805	1296.606939213096	33.582	0.25902	33.582	33.452	33.711	0					10	4	3	0	0	0	1.5121E-30	1	12440	12440		255.14	176.41	1	18763000			26170	3840	16653	16741	25141	25141					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S1	1	648.8073120117188	2	648.806956	1295.59936	0.65298	0.00042366	-0.30113	-0.00019537	0.35186	0.00022829	648.8070616281619	43.247	0.26031	43.247	43.108	43.368	0					11	4	3	0	0	0	0.58525	1	16356	16356		37.075	19.962	1	14497000			26171	3840	16653	16741	25142	25142					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S2	2	648.8075561523438	2	648.806956	1295.59936	0.81825	0.00053089	-0.23323	-0.00015132	0.58502	0.00037957	648.8069427528098	33.701	0.83095	33.508	33.327	34.158	-0.19297					49	15	6	0	0	0	4.4711E-22	2	12497	12469;12497		240.78	162.05	1	3325699999.9999995			26172	3840	16653	16741	25143;25144	25144					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S2	2	648.80712890625	2	648.806956	1295.59936	0.29822	0.00019349	0.036595	2.3743E-05	0.33482	0.00021723	648.8070460271313	43.324	0.46415	43.251	43.097	43.561	-0.073376					17	8	4	0	0	0	0.25343	1	16438	16438		69.338	36.553	1	39002000			26173	3840	16653	16741	25145	25145					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S3	3	648.8072509765625	2	648.806956	1295.59936	0.63543	0.00041227	-0.024721	-1.6039E-05	0.61071	0.00039623	648.8069436972189	33.981	0.4166	33.687	33.507	33.923	-0.29419					23	7	4	0	0	0	1.1793E-16	1	12473	12473		235.01	156.28	1	121780000			26174	3840	16653	16741	25146	25146					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S4	4	648.8073120117188	2	648.806956	1295.59936	0.62799	0.00040744	0.032363	2.0997E-05	0.66035	0.00042844	648.8070024308747	34.025	0.31163	33.641	33.466	33.777	-0.38426					15	5	3	0	0	0	3.5139E-05	1	12409	12409		162.31	83.586	1	8521400			26175	3840	16653	16741	25147	25147					-0.03661621266655857
QLEKGPSHNQE	11	Unmodified	_QLEKGPSHNQE_					0	0	0			REV__ENSG00000269743|ENST00000594199|SLC25A53	REV__ENSG00000269743|ENST00000594199|SLC25A53	MULTI-MSMS	HCT116MG_D190212_S4	4	633.8072509765625	2	633.807291	1265.60003	0.34396	0.00021801	-0.09916	-6.2849E-05	0.2448	0.00015516	633.8074200137178	22.515	1.3036	22.285	21.777	23.081	-0.23044					50	24	3	0	0	0	0.70836	1	7733	7733		18.721	2.5721	1	7635300	+		26176	14436	16654	16742	25148	25148					-0.02214781826955914
QLELIIKH	8	Unmodified	_QLELIIKH_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;RNF213|p.Q1953Rfs*50|2|0.13|ENSG00000173821|chr17:80340219-80340219|C/-|frameshift_variant;RNF213|p.P2167Lfs*64|1|0.09|ENSG00000173821|chr17:80344834-80344835|-/T|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	497.234130859375	2	497.30821	992.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.578	1	45.205	44.705	45.705	-0.37266								0	0	0	0.8837	1	16818	16818		4.756	0	1				26177	5305	16655	16743	25149	25149					0.10526923719612569
QLENKTKGSGY	11	Unmodified	_QLENKTKGSGY_					0	0	0			REV__tr|U7SUE1|U7SUE1_FUSNUGlutamateracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murIPE=3SV=1	REV__tr|U7SUE1|U7SUE1_FUSNUGlutamateracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=murIPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	612.81298828125	2	612.814584	1223.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.954	1	47.638	47.138	48.138	-0.31596								0	0	0	0.94145	1	18023	18023		10.8	2.0541	1		+		26178	17827	16656	16744	25150	25150					0.011752903212027377
QLFPKAWELFE	11	Unmodified	_QLFPKAWELFE_					0	0	0		ENST00000429772.6_1_12:48362369-48362630:+|nuORF	ENST00000429772.6_1_12:48362369-48362630:+|nuORF	ENST00000429772.6_1_12:48362369-48362630:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	470.25067138671875	3	469.915089	1406.72344	0.32962	0.00015489	2.548	0.0011974	2.8777	0.0013523	470.2502677734853	24.148	0.26168	24.148	23.993	24.255	0					7	4	2	0	0	0	0.74191	1	8652	8652		1.9275	0.91393	1	5320200			26179	7842	16657	16745	25151	25151					0.036345012914580366
QLFRGDTVLL	10	Unmodified	_QLFRGDTVLL_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	HCT116MG_D190212_S2	2	581.3340454101562	2	581.334956	1160.65536	0.33328	0.00019375	-0.51163	-0.00029743	-0.17835	-0.00010368	581.3344478737364	53.541	0.25674	53.351	53.172	53.429	-0.1894					7	4	2	0	0	0	0.091457	1	20608	20608		75.761	23.492	1	12587000			26180	4759	16658	16746	25152	25152					0.08145676431468019
QLFWEPMKVHD	11	Unmodified	_QLFWEPMKVHD_					0	0	0		ENSG00000198704|ENST00000361902|GPX6	ENSG00000198704|ENST00000361902|GPX6	ENSG00000198704|ENST00000361902|GPX6	MULTI-SECPEP	HCT116MG_D190212_S2	2	715.3667602539062	2	715.35028	1428.68601	1.1949	0.00085479	1.4018	0.0010028	2.5968	0.0018576	715.8527929505965	44.905	0.2074	44.82	44.691	44.899	-0.084797					5	3	2	0	0	0	0.36112	1	17065	17065		4.1895	0	1	17957000			26181	6254	16659	16747	25153	25153					-0.011189132458184758
QLGSPKHQA	9	Unmodified	_QLGSPKHQA_					0	0	0			REV__ENST00000471941.5_1_10:45479206-45479773:+|nuORF	REV__ENST00000471941.5_1_10:45479206-45479773:+|nuORF	MSMS	HCT116MG_D190212_S3	3	483.2623291015625	2	483.261791	964.509028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.158	1	24.097	23.597	24.597	-0.061449								0	0	0	0.30238	1	8565	8565		39.95	7.164	1		+		26182	15878	16660	16748	25154	25154					0.02535418986235527
QLHKRAERI	9	Unmodified	_QLHKRAERI_					0	0	0		DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant;ENSG00000066084|ENST00000301180|DIP2B	DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant	DIP2B|p.V1240Dfs*9|1|0.05|ENSG00000066084|chr12:50731445-50731446|-/ATATTTAC|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	576.3955078125	2	575.843813	1149.67307	0.39081	0.00022504	-2.564	-0.0014765	-2.1732	-0.0012514	576.3437802505939	55.436	0.25444	55.25	55.021	55.276	-0.18565					6	4	2	0	0	0	0.26009	1	21320	21320		3.5965	0	1	4240300			26183	677	16661	16749	25155	25155					0.10422436476960684
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		ENST00000587491.5_1_17:75207779-75210102:+|nuORF;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	571.8320922851562	2	571.832049	1141.64954	0.44071	0.00025201	0.052321	2.9919E-05	0.49303	0.00028193	571.8319081900476	54.815	0.20339	54.815	54.688	54.892	0					8	3	3	0	0	0	0.0035731	1	21054	21054		174.73	96.578	1	196150000			26184	3041	16662	16750	25156	25156					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		ENST00000587491.5_1_17:75207779-75210102:+|nuORF;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1142.485107421875	1	1142.65682	1141.64954	0.55565	0.00063492	0.23084	0.00026377	0.78649	0.00089869	1142.6567281053028	55.03	0.15307	54.842	54.714	54.867	-0.18797					4	2	2	0	0	0	0.00046881	1	21193	21193		195.45	106.05	1	29894000			26185	3041	16662	16750	25157	25157					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		ENST00000587491.5_1_17:75207779-75210102:+|nuORF;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	571.83203125	2	571.832049	1141.64954	0.36744	0.00021012	0.22385	0.00012801	0.5913	0.00033812	571.8321140511157	55.029	0.2038	54.841	54.714	54.918	-0.18797					13	3	5	0	0	0	0.0012137	1	21202	21202		191.38	105.74	1	716880000			26186	3041	16662	16750	25158	25158					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		ENST00000587491.5_1_17:75207779-75210102:+|nuORF;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	MSMS	HCT116MG_D190212_S3	3	571.8322143554688	2	571.832049	1141.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.145	1	54.853	54.353	55.353	-0.2918								0	0	0	1.1166E-12	1	20911	20911		176.84	69.65	1				26187	3041	16662	16750	25159	25159					0.08438577919810086
QLIFLYFWWRR	11	Unmodified	_QLIFLYFWWRR_					0	0	0		ENST00000471075.1_1_3:171371881-171395443:-|nuORF	ENST00000471075.1_1_3:171371881-171395443:-|nuORF	ENST00000471075.1_1_3:171371881-171395443:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	542.7335815429688	3	543.301389	1626.88234	0.51977	0.00028239	-1.2742	-0.00069228	-0.75443	-0.00040988	543.3008510498552	27.687	0.20709	27.687	27.541	27.748	0					5	3	2	0	0	0	0.36631	1	10062	10062		0	0	1	8607100			26188	8152	16663	16751	25160	25160					0.09397259710226535
QLIHKRRAT	9	Unmodified	_QLIHKRRAT_					0	0	0		nc|ENSG00000092929|Q70J99-3|UNC13D;ENSG00000092929|ENST00000207549|UNC13D	nc|ENSG00000092929|Q70J99-3|UNC13D	nc|ENSG00000092929|Q70J99-3|UNC13D	MULTI-MSMS	HCT116MG_D190212_S1	1	561.8461303710938	2	561.846356	1121.67816	0.20845	0.00011711	-1.5514	-0.00087168	-1.343	-0.00075456	561.845695166385	50.91	0.61973	50.91	50.678	51.297	0					21	11	3	0	0	0	0.71898	1	19436	19436		3.9444	0.66309	1	55468000			26189	1590	16664	16752	25161	25161					0.12218740339585565
QLIHPIPGRPQ	11	Unmodified	_QLIHPIPGRPQ_					0	0	0			REV__ENST00000450873.6_2_7:66236975-66240294:+|nuORF	REV__ENST00000450873.6_2_7:66236975-66240294:+|nuORF	MSMS	HCT116MG_D190212_S3	3	628.3703002929688	2	628.367121	1254.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.252	1	34.953	34.453	35.453	-0.29922								0	0	0	0.9465	1	13005	13005		8.1555	1.4324	1		+		26190	15709	16665	16753	25162	25162					0.10251876308279861
QLIKRKSK	8	Unmodified	_QLIKRKSK_					0	0	0			REV__FBXO43|p.R457I|1|0.4|ENSG00000156509|chr8:100140884-100140884|C/A|missense_variant	REV__FBXO43|p.R457I|1|0.4|ENSG00000156509|chr8:100140884-100140884|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	500.83502197265625	2	500.834926	999.655299	0.28532	0.0001429	0.15026	7.5256E-05	0.43558	0.00021815	500.8348481375466	58.419	0.40504	58.419	58.261	58.666	0					13	7	3	0	0	0	0.86858	1	22522	22522		2.0598	0	1	45491000	+		26191	16813	16666	16754	25163	25163					0.1554572122213358
QLIKYLKSE	9	Unmodified	_QLIKYLKSE_					0	0	0			REV__nc|ENSG00000113712|P48729-3|CSNK1A1	REV__nc|ENSG00000113712|P48729-3|CSNK1A1	MSMS	HCT116MG_D190212_S2	2	561.61572265625	2	561.331882	1120.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.476	1	37.373	36.873	37.873	-0.10318								0	0	0	0.76739	1	14048	14048		10.074	2.7847	1		+		26192	11494	16667	16755	25164	25164					0.09371158199951424
QLILVNTIPA	10	Unmodified	_QLILVNTIPA_					0	0	0		nc|ENSG00000102468|P28223-2|HTR2A;ENSG00000102468|ENST00000542664|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	MSMS	HCT116MG_D190212_S4	4	541.3345947265625	2	541.334424	1080.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.228	1	36.844	36.344	37.344	-0.3839								0	0	0	0.92272	1	13654	13654		10.824	2.6684	1				26193	1842	16668	16756	25165	25165					0.11719462062569619
QLKGRSKEIL	10	Unmodified	_QLKGRSKEIL_					0	0	0			REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	391.2438659667969	3	391.243429	1170.70846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.86	1	29.86	29.36	30.36	0								0	0	0	0.95381	1	10930	10930		3.8763	1.1411	1		+		26194	17637	16669	16757	25166	25166					0.1299305421414374
QLKVRKEHR	9	Unmodified	_QLKVRKEHR_					0	0	0			REV__ENSG00000169213|ENST00000371655|RAB3B	REV__ENSG00000169213|ENST00000371655|RAB3B	MULTI-MSMS	HCT116MG_D190212_S1	1	597.364013671875	2	597.364913	1192.71527	0.66394	0.00039661	-1.1997	-0.00071663	-0.53572	-0.00032002	597.3639038714542	54.085	0.51086	54.085	53.822	54.333	0					19	9	3	0	0	0	0.67781	1	20743	20743		6.7232	0.99131	1	29881000	+		26195	13231	16670	16758	25167	25167					0.12662411885366964
QLKVRKEHR	9	Unmodified	_QLKVRKEHR_					0	0	0			REV__ENSG00000169213|ENST00000371655|RAB3B	REV__ENSG00000169213|ENST00000371655|RAB3B	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	597.364913	1192.71527	0.66394	0.00039661	-1.1997	-0.00071663	-0.53572	-0.00032002	597.3639038714542	54.085	0.51086	54.085	53.822	54.333	0	-0.16046	-0.00019167	NaN	6.7232	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29881000	+		26196	13231	16670	16758							0.12662411885366964
QLKVRKEHR	9	Unmodified	_QLKVRKEHR_					0	0	0			REV__ENSG00000169213|ENST00000371655|RAB3B	REV__ENSG00000169213|ENST00000371655|RAB3B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	597.364913	1192.71527	0.66846	0.00039931	-0.87369	-0.00052191	-0.20523	-0.0001226	597.3641391940946	54.416	0.87078	54.227	53.842	54.712	-0.1894	-0.019289	0.00019777	NaN	6.7232	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147590000	+		26197	13231	16670	16758							0.12662411885366964
QLKVRKEHR	9	Unmodified	_QLKVRKEHR_					0	0	0			REV__ENSG00000169213|ENST00000371655|RAB3B	REV__ENSG00000169213|ENST00000371655|RAB3B	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	597.364913	1192.71527	0.56539	0.00033775	-0.97349	-0.00058153	-0.4081	-0.00024379	597.3643216039801	54.597	0.47046	54.301	54.138	54.609	-0.29587	0.055191	7.8531E-05	NaN	6.7232	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4397200	+		26198	13231	16670	16758							0.12662411885366964
QLKVRKEHR	9	Unmodified	_QLKVRKEHR_					0	0	0			REV__ENSG00000169213|ENST00000371655|RAB3B	REV__ENSG00000169213|ENST00000371655|RAB3B	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	597.364913	1192.71527	1.1845	0.00070757	-1.2334	-0.0007368	-0.04893	-2.9229E-05	597.3637616787223	54.694	0.7818	54.37	54.036	54.818	-0.32349	0.12456	-0.00023201	NaN	6.7232	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17907000	+		26199	13231	16670	16758							0.12662411885366964
QLLDFERTL	9	Unmodified	_QLLDFERTL_					0	0	0		nc|ENSG00000139318|Q16828-2|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000139318|ENST00000279488|DUSP6;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000139318|Q16828-2|DUSP6	nc|ENSG00000139318|Q16828-2|DUSP6	MULTI-MSMS	HCT116MG_D190212_S1	1	567.8113403320312	2	567.811313	1133.60807	0.46232	0.00026251	-0.072453	-4.114E-05	0.38987	0.00022137	567.8112399562094	53.23	0.20492	53.23	53.102	53.307	0					6	3	2	0	0	0	0.032914	1	20395	20395		83.429	0	1	17473000			26200	3621	16671	16759	25168	25168					0.04661397160475644
QLLDLMHTL	9	Unmodified	_QLLDLMHTL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	HCT116MG_D190212_S2	2	542.0045166015625	2	542.296985	1082.57942	0.5867	0.00031817	0.009768	5.2971E-06	0.59647	0.00032346	542.2969037118597	56.52	0.21037	56.338	56.207	56.418	-0.18261					5	3	2	0	0	0	0.23138	1	21788	21788		37.974	16.227	1	34510000			26201	9417	16672	16760	25169	25169					0.041429562596931646
QLLDQIWRT	9	Unmodified	_QLLDQIWRT_					0	0	0		CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant;ENSG00000165934|ENST00000298875|CPSF2	CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	CPSF2|p.I552Sfs*5|1|0.38|ENSG00000165934|chr14:92157711-92157711|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	586.8250122070312	2	586.824755	1171.63496	0.40911	0.00024008	-0.2542	-0.00014917	0.15491	9.0904E-05	586.8246170165106	53.382	0.20486	53.192	53.07	53.274	-0.18922					8	3	3	0	0	0	0.047849	1	20537	20537		75.761	49.493	1	23448000			26202	595	16673	16761	25170	25170					0.05600505771644748
QLLEIFNSGI	10	Unmodified	_QLLEIFNSGI_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MSMS	HCT116MG_D190212_S2	2	567.3139038085938	2	567.313689	1132.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.373	1	52.186	51.686	52.686	-0.18725								0	0	0	0.53988	1	20117	20117		45.7	1.9272	1				26203	2470	16674	16762	25171	25171					0.05182281303223135
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	MULTI-MSMS	HCT116MG_D190212_S1	1	542.8343505859375	2	542.834257	1083.65396	0.62479	0.00033916	0.1533	8.3216E-05	0.77809	0.00042238	542.834144733092	53.59	0.41162	53.59	53.411	53.822	0					17	7	4	0	0	0	3.7762E-08	1	20528	20528		226.55	84.472	1	232940000			26204	751	16675	16763	25172	25172					0.11548042342701592
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	542.8343505859375	2	542.834257	1083.65396	0.39804	0.00021607	0.032525	1.7656E-05	0.43057	0.00023373	542.8341574740516	53.829	0.30994	53.64	53.48	53.79	-0.1894					13	5	4	0	0	0	7.2446E-08	1	20703	20703		218.2	83.903	1	95266000			26205	751	16675	16763	25173	25173					0.11548042342701592
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ECHDC1|p.N109Ifs*9|1|0.19|ENSG00000093144|chr6:127327057-127327057|T/-|frameshift_variant;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;ECHDC1|p.N222Mfs*3|1|0.46|ENSG00000093144|chr6:127290128-127290128|T/-|frameshift_variant;nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	542.834257	1083.65396	0.4338	0.00023548	1.382	0.00075022	1.8158	0.0009857	543.3373252162347	53.988	0.20741	53.688	53.561	53.769	-0.29946	0.048785	0.0013829	NaN	226.55	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2417400			26206	751	16675	16763							0.11548042342701592
QLLEWRDI	8	Unmodified	_QLLEWRDI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	HCT116MG_D190212_S1	1	536.165771484375	2	536.792924	1071.57129	0.37152	0.00019943	0.18939	0.00010166	0.56091	0.00030109	536.7930444712973	49.432	0.20575	49.432	49.286	49.492	0					6	3	2	0	0	0	0.3238	1	18781	18781		5.7604	0	1	20762000	+		26207	11951	16676	16764	25174	25174					0.03837145334568959
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	HCT116MG_D190212_S1	1	477.2563171386719	2	477.256174	952.497795	0.34678	0.0001655	-1.0165	-0.00048513	-0.66973	-0.00031963	477.2559777786492	33.219	0.20702	33.219	33.089	33.296	0					5	3	2	0	0	0	0.035349	1	12296	12296		81.89	29.622	1	5178800			26208	6166	16677	16765	25175	25175					0.019645968920826817
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	477.256174	952.497795	0.57973	0.00027668	0.23317	0.00011128	0.8129	0.00038796	477.25629552214707	33.473	0.15265	33.28	33.174	33.327	-0.19296	0.030561	0.0006185	NaN	81.89	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17918000			26209	6166	16677	16765							0.019645968920826817
QLLHPRILK	9	Unmodified	_QLLHPRILK_					0	0	0		ENST00000529940.5_1_11:8752463-8832809:-|nuORF	ENST00000529940.5_1_11:8752463-8832809:-|nuORF	ENST00000529940.5_1_11:8752463-8832809:-|nuORF	MSMS	HCT116MG_D190212_S3	3	373.24432373046875	3	373.244992	1116.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.031	1	37.73	37.23	38.23	-0.30137								0	0	0	0.76793	1	14074	14074		8.1555	0	1				26210	8613	16678	16766	25176	25176					0.1594598314754876
QLLHPRILK	9	Unmodified	_QLLHPRILK_					0	0	0		ENST00000529940.5_1_11:8752463-8832809:-|nuORF	ENST00000529940.5_1_11:8752463-8832809:-|nuORF	ENST00000529940.5_1_11:8752463-8832809:-|nuORF	MSMS	HCT116MG_D190212_S4	4	373.24444580078125	3	373.244992	1116.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.19	1	37.808	37.308	38.308	-0.38283								0	0	0	0.76793	1	13987	13987		8.1555	0	1				26211	8613	16678	16766	25177	25177					0.1594598314754876
QLLKKKTKK	9	Unmodified	_QLLKKKTKK_					0	0	0		IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant	IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant	IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	372.2587890625	3	372.260531	1113.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.362	1	40.362	39.862	40.862	0								0	0	0	0.77019	1	15168	15168		0.23584	0.076522	1				26212	9238	16679	16767	25178	25178					0.20743422978853232
QLLKKKTKK	9	Unmodified	_QLLKKKTKK_					0	0	0		IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant	IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant	IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	372.2591857910156	3	372.260531	1113.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.126	1	37.824	37.324	38.324	-0.30137								0	0	0	0.76998	1	14112	14112		0.96228	0.96228	1				26213	9238	16679	16767	25179	25179					0.20743422978853232
QLLKKKTKK	9	Unmodified	_QLLKKKTKK_					0	0	0		IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant	IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant	IL26|p.R65Q|1|0.25|ENSG00000111536|chr12:68225478-68225478|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	372.2591552734375	3	372.260531	1113.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.075	1	37.692	37.192	38.192	-0.38283								0	0	0	0.77019	1	13940	13940		0.23584	0.23584	1				26214	9238	16679	16767	25180	25180					0.20743422978853232
QLLLEEWGP	9	Unmodified	_QLLLEEWGP_					0	0	0		ENSG00000188505|ENST00000339852|NCCRP1	ENSG00000188505|ENST00000339852|NCCRP1	ENSG00000188505|ENST00000339852|NCCRP1	MULTI-MSMS	HCT116MG_D190212_S4	4	543.2781982421875	2	542.787307	1083.56006	0.36913	0.00020036	0.0096106	5.2165E-06	0.37874	0.00020558	542.787099367132	38.712	0.25738	38.33	38.232	38.489	-0.38163					6	4	2	0	0	0	0.59184	1	14226	14226		11.64	0.81637	1	1918300			26215	5986	16680	16768	25181	25181					0.02162323240418118
QLLLIVMPL	9	Unmodified	_QLLLIVMPL_					0	0	0			REV__ZDHHC13|p.W358Lfs*13|1|0.28|ENSG00000177054|chr11:19158998-19158999|-/T|frameshift_variant	REV__ZDHHC13|p.W358Lfs*13|1|0.28|ENSG00000177054|chr11:19158998-19158999|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	520.3326416015625	2	520.332839	1038.65112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.395	1	54.206	53.706	54.706	-0.1894								0	0	0	0.76669	1	20941	20941		12.532	0.89125	1		+		26216	13562	16681	16769	25182	25182					0.13334495684193826
QLLLLLLLLLL	11	Unmodified	_QLLLLLLLLLL_					0	0	0			REV__ENSG00000185033|ENST00000411539|SEMA4B;REV__SEMA4B|p.S797Vfs*6|1|0.32|ENSG00000185033|chr15:90228507-90228508|-/C|frameshift_variant	REV__SEMA4B|p.S797Vfs*6|1|0.32|ENSG00000185033|chr15:90228507-90228508|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	639.3232421875	2	639.462167	1276.90978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.392	1	19.392	18.892	19.892	0								0	0	0	0.96208	1	6722	6722		0	0	1		+		26217	13822;17505	16682	16770	25183	25183					0.28240350197938824
QLLNKPRFCC	10	Unmodified	_QLLNKPRFCC_					0	0	0		ENST00000260665.11_1_2:44121755-44123843:-|nuORF	ENST00000260665.11_1_2:44121755-44123843:-|nuORF	ENST00000260665.11_1_2:44121755-44123843:-|nuORF	MSMS	HCT116MG_D190212_S3	3	611.3153686523438	2	611.315186	1220.61582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.275	1	10.308	9.8079	10.808	0.032559								0	0	0	0.96911	1	3107	3107		0.45834	0	1				26218	6841	16683	16771	25184	25184					0.014335098847595873
QLLPKQVKKLH	11	Unmodified	_QLLPKQVKKLH_					0	0	0			REV__ENSG00000072422|ENST00000337910|RHOBTB1	REV__ENSG00000072422|ENST00000337910|RHOBTB1	MSMS	HCT116MG_D190212_S2	2	666.4275512695312	2	666.429722	1330.84489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.675	1	48.531	48.031	49.031	-0.1437								0	0	0	0.95273	1	18604	18604		4.897	2.1618	1		+		26219	10778	16684	16772	25185	25185					0.192701684446547
QLLQTLQSPAT	11	Unmodified	_QLLQTLQSPAT_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;FRAS1|p.C3202Afs*11|1|0.32|ENSG00000138759|chr4:78508825-78508825|C/-|frameshift_variant;FRAS1|p.G3456Afs*3|1|0.28|ENSG00000138759|chr4:78515987-78515987|G/-|frameshift_variant;FRAS1|p.V2385Sfs*37|1|0.28|ENSG00000138759|chr4:78466329-78466329|G/-|frameshift_variant;nc|ENSG00000138759|Q86XX4-5|FRAS1;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1;FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	nc|ENSG00000138759|Q86XX4|FRAS1	MSMS	HCT116MG_D190212_S4	4	600.334716796875	2	600.335153	1198.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.43	1	32.051	31.551	32.551	-0.37924								0	0	0	0.9387	1	11811	11811		12.241	2.8575	1				26220	3585;9166	16685	16773	25186	25186					0.0643705136067183
QLLRGWQQMFK	11	Unmodified	_QLLRGWQQMFK_					0	0	0		ENST00000486453.1_1_1:181003143-181018564:+|nuORF;ENST00000367578.1_1_1:181003164-181019478:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;MR1|p.P230Qfs*5|1|0.22|ENSG00000153029|chr1:181052314-181052314|C/-|frameshift_variant;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1	ENST00000486453.1_1_1:181003143-181018564:+|nuORF	ENST00000486453.1_1_1:181003143-181018564:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	717.890380859375	2	717.887364	1433.76017	1.3135	0.00094295	1.4859	0.0010667	2.7994	0.0020096	717.8882397182174	36.245	0.67087	36.117	35.555	36.226	-0.12799					17	12	2	0	0	0	0.71776	1	13527	13527		15.248	3.7538	1	21980000			26221	4172	16686	16774	25187	25187					0.06064474636355044
QLLVKLQSI	9	Unmodified	_QLLVKLQSI_					0	0	0			REV__ENST00000491302.1_1_1:198685927-198687246:+|nuORF	REV__ENST00000491302.1_1_1:198685927-198687246:+|nuORF	MSMS	HCT116MG_D190212_S2	2	521.2670288085938	2	521.336967	1040.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.702	1	46.591	46.091	47.091	-0.11121								0	0	0	0.76834	1	17796	17796		6.7232	0	1		+		26222	16040	16687	16775	25188	25188					0.14067765925187814
QLMEDLKWLWY	11	Unmodified	_QLMEDLKWLWY_					0	0	0		ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	MULTI-MSMS	HCT116MG_D190212_S2	2	763.3846435546875	2	762.881413	1523.74827	1.0651	0.00081256	0.46093	0.00035164	1.5261	0.0011642	762.8818764892595	51.758	0.25577	51.574	51.424	51.68	-0.18368					10	4	3	0	0	0	0.63759	1	19886	19886		31.268	5.0002	1	26186000			26223	6035	16688	16776	25189	25189					0.007348131025310067
QLMGPGTR	8	Unmodified	_QLMGPGTR_					0	0	0		ENST00000587557.5_1_19:9434750-9434807:+|nuORF	ENST00000587557.5_1_19:9434750-9434807:+|nuORF	ENST00000587557.5_1_19:9434750-9434807:+|nuORF	MSMS	HCT116MG_D190212_S4	4	430.2287902832031	2	430.226362	858.438172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.045	1	30.68	30.18	31.18	-0.36416								0	0	0	0.8837	1	11251	11251		4.3292	0	1				26224	9007	16689	16777	25190	25190					0.0032900267707418607
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	521.7981567382812	2	521.798206	1041.58186	0.44168	0.00023047	-0.30778	-0.0001606	0.1339	6.9871E-05	521.7979703542725	34.433	0.31243	34.433	34.285	34.597	0					12	5	3	0	0	0	0.0035381	1	12781	12781		171.09	21.172	1	31134000			26225	633	16690	16778	25191	25191					0.0627312798899311
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant;nc|ENSG00000001630|Q16850-2|CYP51A1;ENSG00000001630|ENST00000003100|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	CYP51A1|p.L333Wfs*13|1|0.15|ENSG00000001630|chr7:92123208-92123208|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	521.7989501953125	2	521.798206	1041.58186	0.60312	0.00031471	0.15222	7.9429E-05	0.75534	0.00039413	521.7981822790318	34.58	0.41325	34.421	34.243	34.657	-0.15904					14	7	3	0	0	0	0.0038512	1	12868	12868		152.89	19.834	1	72408000			26226	633	16690	16778	25192	25192					0.0627312798899311
QLNEQLVTL	9	Unmodified	_QLNEQLVTL_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	MULTI-MSMS	HCT116MG_D190212_S2	2	529.3524169921875	2	529.298039	1056.58152	0.41583	0.0002201	0.11055	5.8515E-05	0.52639	0.00027862	529.2978820095138	51.279	0.30896	51.1	50.966	51.275	-0.17869					8	5	2	0	0	0	0.023938	1	19663	19663		92.491	42.558	1	11034000			26227	3320	16691	16779	25193	25193					0.055497082691545074
QLNEQVHSL	9	Unmodified	_QLNEQVHSL_					0	0	0		nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	MULTI-MSMS	HCT116MG_D190212_S1	1	534.2779541015625	2	534.277638	1066.54072	0.41551	0.000222	-0.51137	-0.00027322	-0.095865	-5.1219E-05	534.277473974364	31.692	0.26069	31.692	31.544	31.805	0					8	4	2	0	0	0	0.051033	1	11687	11687		74.2	34.25	1	7544800			26228	4896	16692	16780	25194	25194					0.010113669495240174
QLNEQVHSL	9	Unmodified	_QLNEQVHSL_					0	0	0		nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	MULTI-SECPEP	HCT116MG_D190212_S2	2	534.2451782226562	2	534.277638	1066.54072	0.62595	0.00033443	-0.86651	-0.00046295	-0.24056	-0.00012852	534.2769976682358	31.961	0.30956	31.731	31.529	31.838	-0.23009					10	5	3	0	0	0	0.14607	1	11823	11823		38.615	5.8291	1	11470000			26229	4896	16692	16780	25195	25195					0.010113669495240174
QLNHRWQQFRR	11	Unmodified	_QLNHRWQQFRR_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MSMS	HCT116MG_D190212_S2	2	784.50732421875	2	784.918907	1567.82326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.757	1	17.401	16.901	17.901	-0.35647								0	0	0	0.96149	1	6063	6063		0.30703	0	1				26230	5311	16693	16781	25196	25196					0.06206176468617741
QLNIKALLFGL	11	Unmodified	_QLNIKALLFGL_					0	0	0		ENST00000494540.5_1_10:38645382-38658918:+|nuORF	ENST00000494540.5_1_10:38645382-38658918:+|nuORF	ENST00000494540.5_1_10:38645382-38658918:+|nuORF	MSMS	HCT116MG_D190212_S1	1	615.3831176757812	2	615.384448	1228.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.207	1	25.207	24.707	25.707	0								0	0	0	0.9387	1	9057	9057		12.241	6.5088	1				26231	8370	16694	16782	25197	25197					0.14911699396338918
QLNKENWTV	9	Unmodified	_QLNKENWTV_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	HCT116MG_D190212_S2	2	566.2927856445312	2	566.293288	1130.57202	0.34655	0.00019625	-0.19785	-0.00011204	0.1487	8.4205E-05	566.2930400020757	38.709	0.42374	38.624	38.382	38.806	-0.084618					11	7	3	0	0	0	0.011082	1	14561	14561		110.67	59.045	1	23502000			26232	4408	16695	16783	25198	25198					0.011959399835859585
QLNLPNLHRV	10	Unmodified	_QLNLPNLHRV_					0	0	0		ENST00000427795.2_1_3:14189293-14190394:-|nuORF;nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC	ENST00000427795.2_1_3:14189293-14190394:-|nuORF	ENST00000427795.2_1_3:14189293-14190394:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	602.3505249023438	2	602.351471	1202.68839	0.59158	0.00035634	-1.271	-0.00076561	-0.67944	-0.00040926	602.3504239963825	54.145	0.20536	54.145	54.026	54.231	0					7	3	3	0	0	0	0.31042	1	20772	20772		3.2813	1.4371	1	35955000			26233	4229	16696	16784	25199	25199					0.09515303274156395
QLNRQPLP	8	Unmodified	_QLNRQPLP_					0	0	0			REV__ENST00000537606.5_1_2:27599596-27599662:+|nuORF	REV__ENST00000537606.5_1_2:27599596-27599662:+|nuORF	MSMS	HCT116MG_D190212_S3	3	483.27972412109375	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.127	1	45.814	45.314	46.314	-0.31237								0	0	0	0.8837	1	17290	17290		14.582	1.0738	1		+		26234	16351	16697	16785	25200	25200					0.06172295882936396
QLPKLIHRL	9	Unmodified	_QLPKLIHRL_					0	0	0			REV__ENST00000518956.1_1_8:99425629-99425860:-|nuORF	REV__ENST00000518956.1_1_8:99425629-99425860:-|nuORF	MSMS	HCT116MG_D190212_S1	1	373.24407958984375	3	373.244992	1116.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.294	1	39.294	38.794	39.794	0								0	0	0	0.76875	1	14736	14736		5.2969	0	1		+		26235	16220	16698	16786	25201	25201					0.1594598314754876
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	HCT116MG_D190212_S2	2	589.7777099609375	2	589.77747	1177.54039	0.62002	0.00036567	-0.073024	-4.3068E-05	0.54699	0.0003226	589.777295529735	55.539	0.20692	55.354	55.225	55.431	-0.18565					7	3	3	0	0	0	0.0057285	1	21436	21436		131.27	78.999	1	98420000			26236	5043	16699	16787	25202	25202					-0.04128052770352042
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	HCT116MG_D190212_S2	2	1178.54833984375	1	1178.54766	1177.54039	0.52279	0.00061613	0.083326	9.8204E-05	0.60612	0.00071434	1178.5477387754	55.539	0.15585	55.354	55.276	55.431	-0.18565					4	2	2	0	0	0	0.01389	1	21442	21442		103.75	78.349	1	31221000			26237	5043	16699	16787	25203	25203					-0.04128052770352042
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	HCT116MG_D190212_S3	3	589.7776489257812	2	589.77747	1177.54039	0.59971	0.0003537	0.13472	7.9453E-05	0.73443	0.00043315	589.7774598424016	55.619	0.21937	55.331	55.192	55.411	-0.28773					5	3	2	0	0	0	0.2682	1	21122	21122		34.102	22.462	1	4938300			26238	5043	16699	16787	25204	25204					-0.04128052770352042
QLQDKEEKISQ	11	Unmodified	_QLQDKEEKISQ_					0	0	0			REV__nc|ENSG00000091879|O15123-2|ANGPT2	REV__nc|ENSG00000091879|O15123-2|ANGPT2	MSMS	HCT116MG_D190212_S4	4	673.3511352539062	2	673.351531	1344.68851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.321	1	28.972	28.472	29.472	-0.34921								0	0	0	0.93456	1	10583	10583		14.405	4.3315	1		+		26239	11007	16700	16788	25205	25205					0.02995213692861398
QLQDTLIHL	9	Unmodified	_QLQDTLIHL_					0	0	0		ENST00000558034.1_1_3:53321600-53322346:-|nuORF;nc|ENSG00000272886|Q9NPI6-2|DCP1A;ENSG00000272886|ENST00000610213|DCP1A	ENST00000558034.1_1_3:53321600-53322346:-|nuORF	ENST00000558034.1_1_3:53321600-53322346:-|nuORF	MSMS	HCT116MG_D190212_S2	2	540.8059692382812	2	540.806031	1079.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.813	1	51.629	51.129	52.129	-0.18369								0	0	0	0.023185	1	19889	19889		88.904	17.77	1				26240	6668	16701	16789	25206	25206					0.060894145060501614
QLQKIKHL	8	Unmodified	_QLQKIKHL_					0	0	0			REV__ENSG00000160299|ENST00000359568|PCNT	REV__ENSG00000160299|ENST00000359568|PCNT	MSMS	HCT116MG_D190212_S2	2	504.3197937011719	2	504.321651	1006.62875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.533	1	56.351	55.851	56.851	-0.18261								0	0	0	0.8837	1	21815	21815		2.5775	0	1		+		26241	12828	16702	16790	25207	25207					0.12570032330779668
QLQKITPHLRW	11	Unmodified	_QLQKITPHLRW_					0	0	0		ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant;nc|ENSG00000171551|O95672-2|ECEL1;ENSG00000171551|ENST00000304546|ECEL1	ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant	ECEL1|p.P567Hfs*48|2|0.32|ENSG00000171551|chr2:232482594-232482594|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	710.0753173828125	2	710.414603	1418.81465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.902	1	47.533	47.033	48.033	-0.36907								0	0	0	0.94755	1	17723	17723		7.609	2.7119	1				26242	750	16703	16791	25208	25208					0.12199809779440329
QLQQSKGIV	9	Unmodified	_QLQQSKGIV_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;ENST00000475407.5_2_9:127642811-127683993:-|nuORF;ENST00000373551.4_1_9:127662694-127674188:-|nuORF	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MSMS	HCT116MG_D190212_S4	4	500.7928466796875	2	500.792924	999.571294	0.32008	0.00016029	0.24062	0.0001205	0.5607	0.00028079	500.7929629069657	31.178	0.30926	30.808	30.714	31.023	-0.37027					7	5	2	0	0	0	0.37539	1	11335	11335		24.021	0	1	2713600			26243	3447	16704	16792	25209	25209					0.07149145334574314
QLQVPWLKP	9	Unmodified	_QLQVPWLKP_					0	0	0			REV__ENST00000553026.5_1_12:30881575-30884349:-|nuORF	REV__ENST00000553026.5_1_12:30881575-30884349:-|nuORF	MSMS	HCT116MG_D190212_S3	3	370.2224426269531	3	370.221965	1107.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.962	1	57.687	57.187	58.187	-0.27434								0	0	0	0.7701	1	22039	22039		1.0715	0	1		+		26244	10090	16705	16793	25210	25210					0.09454899127990757
QLREMHQHN	9	Unmodified	_QLREMHQHN_					0	0	0			REV__ENST00000422736.1_1_6:134775597-134775690:-|nuORF	REV__ENST00000422736.1_1_6:134775597-134775690:-|nuORF	MSMS	HCT116MG_D190212_S1	1	398.5787353515625	3	398.192851	1191.55672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.676	1	53.676	53.176	54.176	0								0	0	0	0.76902	1	20562	20562		2.4985	1.427	1		+		26245	15529	16706	16794	25211	25211					-0.03139250085223466
QLRFWAIY	8	Unmodified	_QLRFWAIY_					0	0	0		GAL3ST4|p.F427Sfs*17|1|0.32|ENSG00000197093|chr7:100160111-100160111|G/-|frameshift_variant	GAL3ST4|p.F427Sfs*17|1|0.32|ENSG00000197093|chr7:100160111-100160111|G/-|frameshift_variant	GAL3ST4|p.F427Sfs*17|1|0.32|ENSG00000197093|chr7:100160111-100160111|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	366.2021179199219	3	366.202793	1095.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.072	1	33.688	33.188	34.188	-0.38426								0	0	0	0.8837	1	12427	12427		4.3292	0.38484	1				26246	9178	16707	16795	25212	25212					0.04258056922412834
QLRKFTEWFFT	11	Unmodified	_QLRKFTEWFFT_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000116991|Q9P2F8-2|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-SECPEP	HCT116MG_D190212_S1	1	501.78131103515625	3	501.597871	1501.77178	0.28105	0.00014097	-0.47421	-0.00023786	-0.19316	-9.689E-05	501.9321194847932	32.424	0.2086	32.424	32.326	32.534	0					5	3	2	0	0	0	0.36593	1	11969	11969		1.3296	0.96297	1	3836800			26247	2551	16708	16796	25213	25213					0.04096994931364861
QLRKQFKK	8	Unmodified	_QLRKQFKK_					0	0	0			REV__REV3L|p.N1694Mfs*4|2|0.16|ENSG00000009413|chr6:111373274-111373274|T/-|frameshift_variant	REV__REV3L|p.N1694Mfs*4|2|0.16|ENSG00000009413|chr6:111373274-111373274|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	359.22869873046875	3	359.229342	1074.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.844	1	28.844	28.344	29.344	0								0	0	0	0.8837	1	10520	10520		3.9444	0	1		+		26248	10506	16709	16797	25214	25214					0.13185123596394988
QLRRKRRRMFR	11	Unmodified	_QLRRKRRRMFR_					0	0	0			REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF	REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF	MSMS	HCT116MG_D190212_S1	1	534.9933471679688	3	534.995188	1601.96373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.835	1	50.835	50.335	51.335	0								0	0	0	0.96208	1	19407	19407		0	0	1		+		26249	15305	16710	16798	25215	25215					0.18683056921190655
QLRSLNLVP	9	Unmodified	_QLRSLNLVP_					0	0	0		ENST00000477979.5_1_10:102823983-102824674:+|nuORF;ENSG00000107821|ENST00000370200|KAZALD1	ENST00000477979.5_1_10:102823983-102824674:+|nuORF	ENST00000477979.5_1_10:102823983-102824674:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	520.3165283203125	2	520.316566	1038.61858	0.63963	0.00033281	-0.1989	-0.00010349	0.44073	0.00022932	520.3162702968705	33.364	0.46356	33.171	32.863	33.327	-0.19297					17	8	3	0	0	0	0.16306	1	12376	12376		45.7	3.6051	1	29270000			26250	2131	16711	16799	25216	25216					0.10081424605550637
QLRWRLWIT	9	Unmodified	_QLRWRLWIT_					0	0	0			REV__ENST00000339686.7_1_19:36002448-36003323:-|nuORF	REV__ENST00000339686.7_1_19:36002448-36003323:-|nuORF	MSMS	HCT116MG_D190212_S4	4	424.1544494628906	3	424.583897	1270.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.102	1	12.937	12.437	13.437	-0.16496								0	0	0	0.77018	1	4097	4097		0.26902	0.1097	1		+		26251	14965	16712	16800	25217	25217					0.10532484033501532
QLSAPSSHAR	10	Unmodified	_QLSAPSSHAR_					0	0	0			REV__nc|ENSG00000137693|P46937-5|YAP1	REV__nc|ENSG00000137693|P46937-5|YAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2737426757812	2	527.275429	1052.53631	0.45844	0.00024172	-3.1091	-0.0016393	-2.6507	-0.0013976	527.2739978420333	35.606	0.30822	35.463	35.335	35.643	-0.14245					8	5	2	0	0	0	0.50387	1	13318	13318		34.932	13.185	1	32111000	+		26252	12184	16713	16801	25218	25218					0.01213902526592392
QLSAPSSHAR	10	Unmodified	_QLSAPSSHAR_					0	0	0			REV__nc|ENSG00000137693|P46937-5|YAP1	REV__nc|ENSG00000137693|P46937-5|YAP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	527.7379760742188	2	527.275429	1052.53631	0.45844	0.00024172	-3.1091	-0.0016393	-2.6507	-0.0013976	527.2739978420333	35.606	0.30822	35.463	35.335	35.643	-0.14245					8	5	2	0	0	0	0.23246	1	13268	13268		41.84	18.691	1	32111000	+		26253	12184	16713	16801	25219	25219					0.01213902526592392
QLSAPSSHAR	10	Unmodified	_QLSAPSSHAR_					0	0	0			REV__nc|ENSG00000137693|P46937-5|YAP1	REV__nc|ENSG00000137693|P46937-5|YAP1	MSMS	HCT116MG_D190212_S3	3	527.2737426757812	2	527.275429	1052.53631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.872	1	35.572	35.072	36.072	-0.30042								0	0	0	0.78084	1	13235	13235		31.268	2.7815	1		+		26254	12184	16713	16801	25220	25220					0.01213902526592392
QLSELQNKLF	10	Unmodified	_QLSELQNKLF_					0	0	0			REV__nc|ENSG00000176087|L0R6Q1|SLC35A4	REV__nc|ENSG00000176087|L0R6Q1|SLC35A4	MSMS	HCT116MG_D190212_S2	2	407.2287902832031	3	407.227556	1218.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.184	1	40.112	39.612	40.612	-0.072838								0	0	0	0.92573	1	15147	15147		10.151	2.6735	1		+		26255	17222	16714	16802	25221	25221					0.06025355223277984
QLTLEDPQ	8	Unmodified	_QLTLEDPQ_					0	0	0		ENSG00000137265|ENST00000380956|IRF4;nc|ENSG00000137265|Q15306-2|IRF4;ENST00000495137.5_1_6:394829-397293:+|nuORF	ENSG00000137265|ENST00000380956|IRF4	ENSG00000137265|ENST00000380956|IRF4	MSMS	HCT116MG_D190212_S4	4	472.2397766113281	2	472.24019	942.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.491	1	28.159	27.659	28.659	-0.33138								0	0	0	0.87079	1	10247	10247		16.942	1.0951	1				26256	3470	16715	16803	25222	25222					-0.007708155817113038
QLTLNPPE	8	Unmodified	_QLTLNPPE_					0	0	0		ENST00000462569.5_1_21:46197196-46221663:-|nuORF;ENST00000477954.5_1_21:46194646-46221663:-|nuORF;ENSG00000184787|ENST00000345496|UBE2G2	ENST00000462569.5_1_21:46197196-46221663:-|nuORF	ENST00000462569.5_1_21:46197196-46221663:-|nuORF	MSMS	HCT116MG_D190212_S3	3	456.24420166015625	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.709	1	36.408	35.908	36.908	-0.30113								0	0	0	0.8837	1	13573	13573		15.847	1.0089	1				26257	5780	16716	16804	25223	25223					0.017177921435290955
QLTLTITL	8	Unmodified	_QLTLTITL_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MSMS	HCT116MG_D190212_S2	2	451.7798156738281	2	451.781493	901.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.8	1	46.689	46.189	47.189	-0.11121								0	0	0	0.81076	1	17836	17836		21.747	0	1		+		26258	11377	16717	16805	25224	25224					0.09372126217078858
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF;nc|ENSG00000131467|P61289-3|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	HCT116MG_D190212_S1	1	528.8189086914062	2	528.818607	1055.62266	0.30617	0.00016191	0.13098	6.9265E-05	0.43715	0.00023118	528.8185070078009	52.086	0.31523	52.086	51.861	52.176	0					12	5	3	0	0	0	9.4614E-05	2	19921	19896;19921		200.32	69.053	1	80370000			26259	3143	16718	16806	25225;25226	25226					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF;nc|ENSG00000131467|P61289-3|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	HCT116MG_D190212_S2	2	528.8182983398438	2	528.818607	1055.62266	0.6242	0.00033009	-0.45487	-0.00024054	0.16933	8.9544E-05	528.8182648377023	52.301	0.41229	52.113	51.935	52.347	-0.18726					18	7	4	0	0	0	0.0019891	1	20087	20087		187.14	55.875	1	245440000			26260	3143	16718	16806	25227	25227					0.09707469308591499
QLVPADGI	8	Unmodified	_QLVPADGI_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;TYMP|p.L223Pfs*54|1|0.03|ENSG00000025708|chr22:50527262-50527263|-/GTTTCTTACTGAGAATGCCTCCATTCTCAGCCCCTCCACGG|frameshift_variant;ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MSMS	HCT116MG_D190212_S4	4	406.72796630859375	2	406.729261	811.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.958	1	41.582	41.082	42.082	-0.37637								0	0	0	0.8837	1	15403	15403		2.5775	0	1				26261	955	16719	16807	25228	25228					0.030704244603612096
QLVQHWWLFLK	11	Unmodified	_QLVQHWWLFLK_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MSMS	HCT116MG_D190212_S2	2	749.419677734375	2	749.421897	1496.82924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.627	1	45.526	45.026	46.026	-0.10062								0	0	0	0.95196	1	17357	17357		5.2969	2.0156	1		+		26262	12625	16720	16808	25229	25229					0.10069881927574897
QLVRDLLEV	9	Unmodified	_QLVRDLLEV_					0	0	0		nc|ENSG00000109320|P19838-3|NFKB1;NFKB1|p.I888Sfs*8|1|0.09|ENSG00000109320|chr4:102613497-102613497|A/-|frameshift_variant;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	MULTI-MSMS	HCT116MG_D190212_S2	2	542.8218383789062	2	542.821681	1083.62881	0.45896	0.00024913	-0.052489	-2.8492E-05	0.40647	0.00022064	542.8217799963475	52.899	0.25636	52.71	52.553	52.809	-0.18922					10	4	3	0	0	0	0.084109	1	20351	20351		61.357	23.383	1	17181000			26263	2201	16721	16809	25230	25230					0.09033987540146882
QLVRRGELLR	10	Unmodified	_QLVRRGELLR_					0	0	0		KIF26B|p.G746Efs*98|1|0.05|ENSG00000162849|chr1:245646258-245646259|-/AGAT|frameshift_variant	KIF26B|p.G746Efs*98|1|0.05|ENSG00000162849|chr1:245646258-245646259|-/AGAT|frameshift_variant	KIF26B|p.G746Efs*98|1|0.05|ENSG00000162849|chr1:245646258-245646259|-/AGAT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	620.385009765625	2	620.385845	1238.75714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.04	1	53.851	53.351	54.351	-0.1894								0	0	0	0.95507	1	20796	20796		3.5965	0	1				26264	9265	16722	16810	25231	25231					0.1473096757388248
QLVYIKML	8	Unmodified	_QLVYIKML_					0	0	0			REV__ENSG00000182963|ENST00000592524|GJC1	REV__ENSG00000182963|ENST00000592524|GJC1	MULTI-SECPEP	HCT116MG_D190212_S1	1	504.3377685546875	2	504.301539	1006.58852	0.25587	0.00012903	0.29572	0.00014913	0.55159	0.00027817	504.3017092560471	44.454	0.73688	44.454	43.936	44.673	0					17	13	2	0	0	0	0.33446	1	16686	16686		2.3027	0	1	6376300	+		26265	13738	16723	16811	25232	25232					0.08549349616021118
QLWHFILELLR	11	Unmodified	_QLWHFILELLR_					0	0	0		ENST00000596818.1_1_19:42754481-42759151:-|nuORF;ERF|p.G240Vfs*31|1|0.3|ENSG00000105722|chr19:42249393-42249393|C/-|frameshift_variant;ERF|p.G299Efs*12|1|0.23|ENSG00000105722|chr19:42249216-42249216|C/-|frameshift_variant;ERF|p.L525Sfs*6|3|0.27|ENSG00000105722|chr19:42248543-42248543|C/-|frameshift_variant;ENSG00000105722|ENST00000222329|ERF	ENST00000596818.1_1_19:42754481-42759151:-|nuORF	ENST00000596818.1_1_19:42754481-42759151:-|nuORF	MSMS	HCT116MG_D190212_S1	1	489.9528503417969	3	489.953878	1466.8398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.302	1	47.302	46.802	47.802	0								0	0	0	0.85129	1	17969	17969		16.275	3.4186	1				26266	2029	16724	16812	25233	25233					0.1250586458199905
QLWYFWRRHVF	11	Unmodified	_QLWYFWRRHVF_					0	0	0		ENST00000441875.1_1_17:16330801-16331912:+|nuORF;ENSG00000187688|ENST00000338560|TRPV2	ENST00000441875.1_1_17:16330801-16331912:+|nuORF	ENST00000441875.1_1_17:16330801-16331912:+|nuORF	MSMS	HCT116MG_D190212_S1	1	819.5093994140625	2	819.428045	1636.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.107	1	47.107	46.607	47.607	0								0	0	0	0.95581	1	17890	17890		3.2813	1.9518	1				26267	5953	16725	16813	25234	25234					0.04858918390618783
QLYDRTEQTGP	11	Unmodified	_QLYDRTEQTGP_					0	0	0			REV__ENST00000222248.3_1_19:17988859-17994831:+|nuORF	REV__ENST00000222248.3_1_19:17988859-17994831:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	654.8168334960938	2	654.314948	1306.61534	0.21848	0.00014296	0.26071	0.00017059	0.47919	0.00031354	654.3150712610271	17.313	1.4001	17.142	16.448	17.848	-0.17046					43	26	2	0	0	0	0.73696	1	5869	5869		8.1555	0	1	3583100	+		26268	14523	16726	16814	25235	25235					-0.025699150297668893
QLYEKKKRRSR	11	Unmodified	_QLYEKKKRRSR_					0	0	0			REV__ATF6B|p.Q341R|1|0.11|ENSG00000213676|chr6:32119086-32119086|T/C|missense_variant	REV__ATF6B|p.Q341R|1|0.11|ENSG00000213676|chr6:32119086-32119086|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	746.4461669921875	2	746.446966	1490.87938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.813	1	52.813	52.313	53.313	0								0	0	0	0.95731	1	20210	20210		2.4985	0.84587	1		+		26269	10003	16727	16815	25236	25236					0.1535738458542255
QMAEIAVNA	9	Unmodified	_QMAEIAVNA_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	HCT116MG_D190212_S1	1	946.465087890625	1	946.466243	945.458967	0.53436	0.00050576	1.0313	0.00097612	1.5657	0.0014819	946.4649010215734	37.919	0.31177	37.919	37.707	38.019	0					6	5	2	0	0	0	0.023938	1	14199	14199		92.491	33.813	1	5943400			26270	4090	16728	16816	25237	25237					-0.015944517339335107
QMAEIAVNA	9	Unmodified	_QMAEIAVNA_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MATCH	HCT116MG_D190212_S2	2		1	946.466243	945.458967	0.43842	0.00041495	1.0398	0.00098412	1.4782	0.0013991	946.465712828773	37.975	0.30891	37.882	37.651	37.96	-0.09301	-0.018185	2.4119E-06	NaN	92.491	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14341000			26271	4090	16728	16816							-0.015944517339335107
QMEPAAFQALY	11	Unmodified	_QMEPAAFQALY_					0	0	0		nc|ENSG00000215845|Q8NFU3-2|TSTD1;nc|ENSG00000215845|Q8NFU3-3|TSTD1;ENSG00000215845|ENST00000423014|TSTD1;nc|ENSG00000215845|Q8NFU3-4|TSTD1	nc|ENSG00000215845|Q8NFU3-2|TSTD1	nc|ENSG00000215845|Q8NFU3-2|TSTD1	MULTI-MSMS	HCT116MG_D190212_S2	2	634.8026123046875	2	634.802631	1267.59071	0.47779	0.0003033	-0.10434	-6.6237E-05	0.37345	0.00023706	634.8024029580562	54.671	0.25531	54.481	54.303	54.559	-0.1894					9	4	3	0	0	0	0.0027806	1	21063	21063		148.27	119.19	1	62455000			26272	6454	16729	16817	25238	25238					-0.032382664368469705
QMISRIEYI	9	Unmodified	_QMISRIEYI_					0	0	0		ENST00000578904.1_1_17:80208040-80213403:-|nuORF;CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	576.8076171875	2	576.807716	1151.60088	0.87484	0.00050461	-0.32464	-0.00018725	0.5502	0.00031736	576.8074260061101	46.744	0.2575	46.633	46.471	46.729	-0.11121					9	4	3	0	0	0	0.0201	1	17829	17829		96.367	32.13	1	22548000			26273	609	16730	16818	25239	25239					0.031143412884148347
QMISRIEYI	9	Unmodified	_QMISRIEYI_					0	0	0		ENST00000578904.1_1_17:80208040-80213403:-|nuORF;CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	576.807716	1151.60088	0.52244	0.00030135	-0.097242	-5.609E-05	0.42519	0.00024526	576.8074515618798	46.673	0.15581	46.673	46.595	46.751	0	0.020041	0.00018092	NaN	96.367	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7843700			26274	609	16730	16818							0.031143412884148347
QMKRRHFRPSG	11	Unmodified	_QMKRRHFRPSG_					0	0	0			REV__ENSG00000160469|ENST00000309383|BRSK1	REV__ENSG00000160469|ENST00000309383|BRSK1	MSMS	HCT116MG_D190212_S4	4	700.3759155273438	2	700.378029	1398.7415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.16	1	43.786	43.286	44.286	-0.37373								0	0	0	0.96003	1	16259	16259		1.0715	0	1		+		26275	12833	16731	16819	25240	25240					0.0580835778519031
QMLLKQVI	8	Unmodified	_QMLLKQVI_					0	0	0		SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant;nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant	SLC9C1|p.T1117Hfs*4|1|0.38|ENSG00000172139|chr3:112167236-112167236|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	486.759033203125	2	486.799163	971.583773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.843	1	49.68	49.18	50.18	-0.16369								0	0	0	0.79325	1	19088	19088		23.148	0	1				26276	5237	16732	16820	25241	25241					0.09684465473253567
QMPLTPFSPHN	11	Unmodified	_QMPLTPFSPHN_					0	0	0		ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant;ALPK1|p.D1036Tfs*3|1|0.09|ENSG00000073331|chr4:112435215-112435215|G/-|frameshift_variant;ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant	ALPK1|p.K1021Nfs*18|1|0.21|ENSG00000073331|chr4:112435170-112435170|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	634.4755249023438	2	634.808248	1267.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.637	1	37.533	37.033	38.033	-0.10318								0	0	0	0.91257	1	14114	14114		18.373	0	1				26277	99	16733	16821	25242	25242					-0.021154443426667058
QNECECPCECP	11	Unmodified	_QNECECPCECP_					0	0	0		nc|ENSG00000158966|Q5VU97-2|CACHD1;CACHD1|p.Q1185Sfs*23|1|0.37|ENSG00000158966|chr1:64691433-64691434|-/C|frameshift_variant;ENSG00000158966|ENST00000651257|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	MSMS	HCT116MG_D190212_S3	3	627.697509765625	2	627.698334	1253.38211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.938	1	18.015	17.515	18.515	0.077215								0	0	0	0.95954	1	6060	6060		1.3295	0.87119	1				26278	300	16734	16822	25243	25243					-0.23444122399246226
QNNKGYWRPV	10	Unmodified	_QNNKGYWRPV_					0	0	0		ENST00000322213.8_1_X:53406608-53406653:-|nuORF	ENST00000322213.8_1_X:53406608-53406653:-|nuORF	ENST00000322213.8_1_X:53406608-53406653:-|nuORF	MSMS	HCT116MG_D190212_S1	1	631.326416015625	2	631.325454	1260.63635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.578	1	58.578	58.078	59.078	0								0	0	0	0.96377	1	22570	22570		1.6526	0	1				26279	7108	16735	16823	25244	25244					0.01646139860395124
QNNYGWATL	9	Unmodified	_QNNYGWATL_					0	0	0		nc|ENSG00000129103|Q8NBJ7-3|SUMF2	nc|ENSG00000129103|Q8NBJ7-3|SUMF2	nc|ENSG00000129103|Q8NBJ7-3|SUMF2	MSMS	HCT116MG_D190212_S1	1	356.1700134277344	3	356.169929	1065.48796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.063	1	29.063	28.563	29.563	0								0	0	0	0.7689	1	10608	10608		2.7352	0	1				26280	9456	16736	16824	25245	25245					-0.04216591113299728
QNQHRLWP	8	Unmodified	_QNQHRLWP_					0	0	0			REV__ENST00000490583.5_1_22:20049160-20052112:+|nuORF	REV__ENST00000490583.5_1_22:20049160-20052112:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	540.3306274414062	2	539.780682	1077.54681	0.48756	0.00026318	-1.5365	-0.00082935	-1.0489	-0.00056617	540.2809036300958	45.967	0.20537	45.866	45.761	45.966	-0.1014					5	3	2	0	0	0	0.31507	1	17531	17531		14.582	10.252	1	6405400	+		26281	16031	16737	16825	25246	25246					0.011139299716887763
QNQLRVKIL	9	Unmodified	_QNQLRVKIL_					0	0	0			REV__ENST00000531791.1_1_11:65143880-65144565:-|nuORF	REV__ENST00000531791.1_1_11:65143880-65144565:-|nuORF	MSMS	HCT116MG_D190212_S4	4	371.3150329589844	3	371.236385	1110.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.744	1	49.382	48.882	49.882	-0.36213								0	0	0	0.77019	1	18462	18462		0.23584	0	1		+		26282	12872	16738	16826	25247	25247					0.13641088905274046
QNSDSVGP	8	Unmodified	_QNSDSVGP_					0	0	0		ENST00000392619.1_3_17:72613273-72613339:-|nuORF	ENST00000392619.1_3_17:72613273-72613339:-|nuORF	ENST00000392619.1_3_17:72613273-72613339:-|nuORF	MSMS	HCT116MG_D190212_S4	4	402.17987060546875	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.87	1	64.638	64.138	65.138	-0.2319								0	0	0	0.8837	1	24384	24384		0.79363	0	1				26283	7613	16739	16827	25248	25248					-0.06336803855458584
QPAEPPPPP	9	Unmodified	_QPAEPPPPP_					0	0	0			REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant	REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	465.3798522949219	2	465.239993	928.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.161	1	22.917	22.417	23.417	-0.24419								0	0	0	0.61599	1	8095	8095		23.148	5.0134	1		+		26284	13502	16740	16828	25249	25249					-0.0016619051091311121
QPAEPPPPP	9	Unmodified	_QPAEPPPPP_					0	0	0			REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant	REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	465.2396240234375	2	465.239993	928.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.373	1	23.125	22.625	23.625	-0.24775								0	0	0	0.61599	1	8180	8180		23.148	0	1		+		26285	13502	16740	16828	25250	25250					-0.0016619051091311121
QPAEPPPPP	9	Unmodified	_QPAEPPPPP_					0	0	0			REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant	REV__VCPIP1|p.L36Afs*51|1|0.27|ENSG00000175073|chr8:66666853-66666854|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	465.2403869628906	2	465.239993	928.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.061	1	23.803	23.303	24.303	-0.25816								0	0	0	0.61599	1	8458	8458		23.148	0	1		+		26286	13502	16740	16828	25251	25251					-0.0016619051091311121
QPAGAATSGPA	11	Unmodified	_QPAGAATSGPA_					0	0	0			REV__ENST00000464110.1_1_22:24179058-24180982:-|nuORF	REV__ENST00000464110.1_1_22:24179058-24180982:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	463.7259521484375	2	464.230156	926.445759	-0.17446	-8.0988E-05	-0.77904	-0.00036165	-0.9535	-0.00044264	464.2280550402564	18.089	0.62122	17.914	17.532	18.153	-0.17501					34	11	4	0	0	0	0.3256	1	5964	5964		23.79	4.5328	1	4490200	+		26287	15804	16741	16829	25252	25252					-0.02040566521668552
QPAGPARPPGQ	11	Unmodified	_QPAGPARPPGQ_					0	0	0			REV__ENST00000318291.4_1_12:752314-752692:+|nuORF	REV__ENST00000318291.4_1_12:752314-752692:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2859497070312	2	538.285797	1074.55704	0.33714	0.00018148	0.19318	0.00010399	0.53032	0.00028546	538.2857556987332	20.608	0.46863	20.642	20.402	20.871	0.034473					22	8	4	0	0	0	0.46185	1	7095	7095		49.527	7.6876	1	19224000	+		26288	14873	16742	16830	25253	25253					0.022744929062810115
QPAGPARPPGQ	11	Unmodified	_QPAGPARPPGQ_					0	0	0			REV__ENST00000318291.4_1_12:752314-752692:+|nuORF	REV__ENST00000318291.4_1_12:752314-752692:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	538.7882080078125	2	538.285797	1074.55704	0.45604	0.00024548	0.11686	6.2905E-05	0.5729	0.00030839	538.285824674983	20.84	0.51911	20.63	20.396	20.915	-0.20959					17	9	2	0	0	0	0.44062	1	7144	7144		51.415	9.5756	1	16128000	+		26289	14873	16742	16830	25254	25254					0.022744929062810115
QPAGPARPPGQ	11	Unmodified	_QPAGPARPPGQ_					0	0	0			REV__ENST00000318291.4_1_12:752314-752692:+|nuORF	REV__ENST00000318291.4_1_12:752314-752692:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	538.285797	1074.55704	0.33714	0.00018148	0.19318	0.00010399	0.53032	0.00028546	538.2857556987332	20.608	0.46863	20.642	20.402	20.871	0.034473	0.0062234	6.7311E-05	NaN	51.415	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19224000	+		26290	14873	16742	16830							0.022744929062810115
QPAGPARPPGQ	11	Unmodified	_QPAGPARPPGQ_					0	0	0			REV__ENST00000318291.4_1_12:752314-752692:+|nuORF	REV__ENST00000318291.4_1_12:752314-752692:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	538.285797	1074.55704	0.45604	0.00024548	0.11686	6.2905E-05	0.5729	0.00030839	538.285824674983	20.84	0.51911	20.63	20.396	20.915	-0.20959	-0.0062234	-1.4853E-05	NaN	51.415	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16128000	+		26291	14873	16742	16830							0.022744929062810115
QPCSCGHW	8	Unmodified	_QPCSCGHW_					0	0	0		nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-6|BCAR1	MSMS	HCT116MG_D190212_S2	2	459.1719055175781	2	459.173272	916.331992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.509	1	12.212	11.712	12.712	-0.29721								0	0	0	0.8837	1	4091	4091		0.79363	0.79363	1				26292	9372	16743	16831	25255	25255					-0.1295207615991103
QPDAPHLDEKS	11	Unmodified	_QPDAPHLDEKS_					0	0	0			REV__nc|nan|Q32M92-2|C15orf32	REV__nc|nan|Q32M92-2|C15orf32	MULTI-SECPEP	HCT116MG_D190212_S3	3	618.8077392578125	2	618.796392	1235.57823	0.171	0.00010581	-0.35295	-0.00021841	-0.18195	-0.00011259	618.795969760243	17.187	1.4047	17.272	16.392	17.797	0.084467					36	26	2	0	0	0	0.34063	1	5808	5808		17.443	1.2935	1	3551200	+		26293	17337	16744	16832	25256	25256					-0.03013586575525551
QPDEPGAP	8	Unmodified	_QPDEPGAP_					0	0	0			REV__ENST00000392730.2_1_17:17287216-17287255:-|nuORF	REV__ENST00000392730.2_1_17:17287216-17287255:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	405.68487548828125	2	405.68505	809.355547	-0.0020857	-8.4613E-07	-0.061442	-2.4926E-05	-0.063528	-2.5772E-05	405.684968519495	18.713	1.1453	18.782	17.886	19.031	0.069159					38	21	3	0	0	0	0.78216	1	6187	6187		13.508	0	1	6175500	+		26294	15316	16745	16833	25257	25257					-0.05675615850088889
QPDGEFPGRP	10	Unmodified	_QPDGEFPGRP_					0	0	0		SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant;SPATA31E1|p.S1369Kfs*11|1|0.12|ENSG00000177992|chr9:87888593-87888594|GC/-|frameshift_variant;ENSG00000177992|ENST00000325643|SPATA31E1	SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	SPATA31E1|p.S1369Afs*4|1|0.12|ENSG00000177992|chr9:87888591-87888591|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	367.17706298828125	3	367.177084	1098.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.418	1	20.038	19.538	20.538	-0.37949								0	0	0	0.94107	1	7136	7136		3.5871	0	1				26295	5481	16746	16834	25258	25258					-0.035892060845753804
QPDKGVPHD	9	Unmodified	_QPDKGVPHD_					0	0	0			REV__nc|ENSG00000135824|P57771-2|RGS8	REV__nc|ENSG00000135824|P57771-2|RGS8	MULTI-MSMS	HCT116MG_D190212_S3	3	496.7441101074219	2	496.743431	991.472308	0.29375	0.00014592	0.052175	2.5918E-05	0.34593	0.00017184	496.7433646629376	22.365	0.6771	22.365	22.042	22.719	0.00074577					20	12	2	0	0	0	0.10244	1	7801	7801		57.722	4.4053	1	4985300	+		26296	17138	16747	16835	25259	25259					-0.023768776303313643
QPDLTHVSTDP	11	Unmodified	_QPDLTHVSTDP_					0	0	0			REV__ENSG00000170836|ENST00000305921|PPM1D	REV__ENSG00000170836|ENST00000305921|PPM1D	MULTI-SECPEP	HCT116MG_D190212_S4	4	605.8076171875	2	605.290942	1208.56733	1.0956	0.00066313	0.97261	0.00058871	2.0682	0.0012518	605.290730715398	19.828	0.20308	19.634	19.533	19.736	-0.19368					5	3	2	0	0	0	0.36308	1	6774	6774		4.5289	1.2476	1	1282800	+		26297	13318	16748	16836	25260	25260					-0.028609889498056873
QPDLTHVSTDP	11	Unmodified	_QPDLTHVSTDP_					0	0	0			REV__ENSG00000170836|ENST00000305921|PPM1D	REV__ENSG00000170836|ENST00000305921|PPM1D	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	605.290942	1208.56733	0.63664	0.00038535	-0.1832	-0.00011089	0.45344	0.00027446	605.2908468540417	20.361	0.26498	19.981	19.865	20.13	-0.37949	0.17362	-2.1063E-05	NaN	4.5289	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7409600	+		26298	13318	16748	16836							-0.028609889498056873
QPDPPAANPK	10	Unmodified	_QPDPPAANPK_					0	0	0		nc|ENSG00000091622|Q9BZ71-2|PITPNM3;nc|ENSG00000091622|Q9BZ71-3|PITPNM3;ENSG00000091622|ENST00000262483|PITPNM3	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	nc|ENSG00000091622|Q9BZ71-2|PITPNM3	MULTI-MSMS	HCT116MG_D190212_S4	4	517.7667846679688	2	517.766906	1033.51926	-0.20063	-0.00010388	0.33423	0.00017306	0.13361	6.9177E-05	517.7670251355413	16.989	1.0199	16.822	16.261	17.281	-0.16664					35	19	2	0	0	0	0.33085	1	5570	5570		47.732	5.8923	1	4802100			26299	1566	16749	16837	25261	25261					0.003839819207769324
QPFDKNTGEK	10	Unmodified	_QPFDKNTGEK_					0	0	0			REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF	REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	582.2880859375	2	582.288202	1162.56185	0.27721	0.00016142	0.42852	0.00024952	0.70573	0.00041094	582.288500679371	17.947	1.1451	18.023	17.425	18.57	0.076334					36	21	2	0	0	0	0.70908	1	5963	5963		19.626	2.5131	1	5838200	+		26300	12279	16750	16838	25262	25262					-0.012926677416317034
QPFFWFSRPAV	11	Unmodified	_QPFFWFSRPAV_					0	0	0		ENST00000490697.1_1_2:242208264-242208402:-|nuORF	ENST00000490697.1_1_2:242208264-242208402:-|nuORF	ENST00000490697.1_1_2:242208264-242208402:-|nuORF	MSMS	HCT116MG_D190212_S1	1	691.3552856445312	2	691.356222	1380.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.145	1	46.145	45.645	46.645	0								0	0	0	0.95636	1	17500	17500		2.9952	0.26005	1				26301	8334	16751	16839	25263	25263					0.022770715597062008
QPFTKDSML	9	Unmodified	_QPFTKDSML_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3-4|MACF1	REV__nc|ENSG00000127603|Q9UPN3-4|MACF1	MULTI-SECPEP	HCT116MG_D190212_S3	3	534.2451782226562	2	533.765517	1065.51648	0.39508	0.00021088	-0.46209	-0.00024665	-0.067013	-3.5769E-05	533.7652596723123	31.811	0.36447	31.54	31.326	31.69	-0.27028					10	6	2	0	0	0	0.26128	1	11686	11686		10.074	0	1	4894500	+		26302	11860	16752	16840	25264	25264					-0.013656095283522518
QPGDPGPQGP	10	Unmodified	_QPGDPGPQGP_					0	0	0		nc|ENSG00000124749|Q96P44-2|COL21A1;ENST00000488912.5_1_6:55922457-55942902:-|nuORF;COL21A1|p.E790Dfs*24|1|0.04|ENSG00000124749|chr6:56060778-56060779|-/AGAGGATATAAGTGAGGTGAAGAAGAAAACAGATAACA|frameshift_variant;COL21A1|p.G902Mfs*52|1|0.44|ENSG00000124749|chr6:56057828-56057829|-/GGAGGGCCCTCTGGACCTAAGATGGGACATT|frameshift_variant;nc|ENSG00000124749|Q96P44-3|COL21A1;ENSG00000124749|ENST00000244728|COL21A1	nc|ENSG00000124749|Q96P44-2|COL21A1	nc|ENSG00000124749|Q96P44-2|COL21A1	MULTI-MSMS	HCT116MG_D190212_S3	3	475.22235107421875	2	475.222331	948.430109	-0.10409	-4.9468E-05	0.084858	4.0326E-05	-0.019236	-9.1414E-06	475.22218649833763	17.634	0.31199	17.716	17.482	17.794	0.081358					8	5	2	0	0	0	0.72678	1	5968	5968		18.146	1.0335	1	1643400			26303	516	16753	16841	25265	25265					-0.04616853038703539
QPGEEPWLPPG	11	Unmodified	_QPGEEPWLPPG_					0	0	0			REV__ENST00000326181.10_1_16:2227686-2227956:+|nuORF	REV__ENST00000326181.10_1_16:2227686-2227956:+|nuORF	MSMS	HCT116MG_D190212_S3	3	603.7915649414062	2	603.793121	1205.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.1	1	17.185	16.685	17.685	0.084467								0	0	0	0.80071	1	5722	5722		32.786	2.0822	1		+		26304	14906	16754	16842	25266	25266					-0.022874797362419486
QPGESLPYHSV	11	Unmodified	_QPGESLPYHSV_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ASCC2|p.R715Efs*40|1|0.04|ENSG00000100325|chr22:29789144-29789144|G/-|frameshift_variant;ENSG00000100325|ENST00000307790|ASCC2;ENST00000487486.5_1_22:30185004-30189497:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	MULTI-MSMS	HCT116MG_D190212_S4	4	607.2957763671875	2	607.296027	1212.5775	1.0654	0.00064703	-0.37909	-0.00023022	0.68634	0.00041681	607.2956892413027	27.797	1.0293	27.476	26.68	27.71	-0.32157					33	19	2	0	0	0	0.7298	1	9780	9780		10.8	1.4164	1	3838500			26305	199	16755	16843	25267	25267					-0.020283812245679655
QPGGGGRD	8	Unmodified	_QPGGGGRD_					0	0	0		nc|ENSG00000131759|P10276-3|RARA;nc|ENSG00000131759|P10276-2|RARA;ENSG00000131759|ENST00000254066|RARA	nc|ENSG00000131759|P10276-3|RARA	nc|ENSG00000131759|P10276-3|RARA	MSMS	HCT116MG_D190212_S3	3	372.1768493652344	2	372.175184	742.335815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.938	1	24.846	24.346	25.346	-0.092052								0	0	0	0.8837	1	8880	8880		8.5933	2.2392	1				26306	3155	16756	16844	25268	25268					-0.04565947070193488
QPGNNLYQSK	10	Unmodified	_QPGNNLYQSK_					0	0	0			REV__F8|p.N982Mfs*22|1|0.31|ENSG00000185010|chrX:154930845-154930845|T/-|frameshift_variant	REV__F8|p.N982Mfs*22|1|0.31|ENSG00000185010|chrX:154930845-154930845|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	574.7882690429688	2	574.78837	1147.56219	0.26637	0.0001531	0.57519	0.00033061	0.84155	0.00048371	574.7886031599301	17.923	0.67542	17.748	17.324	18	-0.17501					16	12	2	0	0	0	0.60826	1	5979	5979		27.629	8.2669	1	1656300	+		26307	13820	16757	16845	25269	25269					-0.005692480217476259
QPGNNLYQSK	10	Unmodified	_QPGNNLYQSK_					0	0	0			REV__F8|p.N982Mfs*22|1|0.31|ENSG00000185010|chrX:154930845-154930845|T/-|frameshift_variant	REV__F8|p.N982Mfs*22|1|0.31|ENSG00000185010|chrX:154930845-154930845|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	574.78837	1147.56219	0.16166	9.2919E-05	0.21572	0.000124	0.37738	0.00021691	574.7884053525249	17.678	0.46822	17.759	17.482	17.95	0.081356	0.0058401	-0.00029925	NaN	27.629	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2878600	+		26308	13820	16757	16845							-0.005692480217476259
QPGPAGLPVPG	11	Unmodified	_QPGPAGLPVPG_					0	0	0		ENST00000533210.5_1_8:144649355-144650416:-|nuORF;ENST00000398882.7_2_8:144649355-144650324:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	495.2745056152344	2	495.274367	988.53418	0.37991	0.00018816	0.1778	8.8058E-05	0.55771	0.00027622	495.2742537710304	41.091	0.31362	40.789	40.632	40.945	-0.30185					11	5	3	0	0	0	0.41343	1	15293	15293		53.833	11.993	1	4046400			26309	8645	16758	16846	25270	25270					0.03945473788814979
QPGPAGLPVPG	11	Unmodified	_QPGPAGLPVPG_					0	0	0		ENST00000533210.5_1_8:144649355-144650416:-|nuORF;ENST00000398882.7_2_8:144649355-144650324:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	495.2740478515625	2	495.274367	988.53418	0.36083	0.00017871	-0.34218	-0.00016947	0.018652	9.2381E-06	495.27400268394854	41.132	0.22253	40.755	40.625	40.848	-0.37732					8	4	2	0	0	0	0.50491	1	15131	15131		45.7	3.86	1	4190400			26310	8645	16758	16846	25271	25271					0.03945473788814979
QPGPEGPAGPK	11	Unmodified	_QPGPEGPAGPK_					0	0	0			REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.2593383789062	2	517.766906	1033.51926	-0.017564	-9.0943E-06	-0.010937	-5.6629E-06	-0.028502	-1.4757E-05	517.7668937173489	18.293	0.26141	17.93	17.851	18.113	-0.36325					5	4	2	0	0	0	0.33111	1	6256	6256		24.957	0	1	1987300	+		26311	10246	16759	16847	25272	25272					0.0038398192079966975
QPGPEGPAGPK	11	Unmodified	_QPGPEGPAGPK_					0	0	0			REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	517.7667236328125	2	517.766906	1033.51926	0.12267	6.3512E-05	0.2383	0.00012338	0.36096	0.0001869	517.7668144487272	16.709	1.9248	16.793	15.976	17.901	0.084467					57	36	3	0	0	0	0.54673	1	5444	5444		41.347	2.134	1	6322000	+		26312	10246	16759	16847	25273	25273					0.0038398192079966975
QPGPEGPAGPK	11	Unmodified	_QPGPEGPAGPK_					0	0	0			REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	REV__COL8A1|p.I509Lfs*24|1|0.12|ENSG00000144810|chr3:99795422-99795422|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	517.7664794921875	2	517.766906	1033.51926	-0.35941	-0.00018609	-0.1826	-9.4546E-05	-0.54201	-0.00028064	517.766482115201	16.26	0.4314	16.096	15.875	16.306	-0.16364					13	8	2	0	0	0	0.55957	1	5331	5331		39.923	2.8483	1	1264400	+		26313	10246	16759	16847	25274	25274					0.0038398192079966975
QPGPFGPSGP	10	Unmodified	_QPGPFGPSGP_					0	0	0			REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	REV__COL4A1|p.G1369Rfs*33|1|0.53|ENSG00000187498|chr13:110164908-110164909|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	470.7276611328125	2	470.729792	939.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.389	1	17.04	16.54	17.54	-0.34933								0	0	0	0.72975	1	5915	5915		36.127	8.4982	1		+		26314	10237	16760	16848	25275	25275					-0.027113611707136442
QPGPGLLV	8	Unmodified	_QPGPGLLV_					0	0	0			REV__ENST00000552943.5_1_16:699416-703842:+|nuORF	REV__ENST00000552943.5_1_16:699416-703842:+|nuORF	MSMS	HCT116MG_D190212_S1	1	390.733154296875	2	390.734346	779.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.241	1	46.241	45.741	46.741	0								0	0	0	0.8837	1	17539	17539		2.3027	0	1		+		26315	12865	16761	16849	25276	25276					0.05559032185624346
QPGPGSTGIPH	11	Unmodified	_QPGPGSTGIPH_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MULTI-MSMS	HCT116MG_D190212_S4	4	524.264892578125	2	524.26453	1046.51451	0.44319	0.00023235	-0.67806	-0.00035548	-0.23486	-0.00012313	524.264240195185	23.943	0.312	23.685	23.521	23.833	-0.25816					12	5	3	0	0	0	0.70377	1	8426	8426		20.415	3.3016	1	2570900			26316	3743	16762	16850	25277	25277					-0.0068890222196387185
QPGPMENDG	9	Unmodified	_QPGPMENDG_					0	0	0		ENST00000361547.6_1_1:26144448-26144709:+|nuORF	ENST00000361547.6_1_1:26144448-26144709:+|nuORF	ENST00000361547.6_1_1:26144448-26144709:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	472.2454833984375	2	472.692549	943.370546	0.15584	7.3666E-05	0.74746	0.00035332	0.9033	0.00042699	472.6926833992429	20.241	0.31196	19.862	19.605	19.917	-0.37949					8	5	2	0	0	0	0.24622	1	7019	7019		11.64	3.7301	1	1645100			26317	7359	16763	16851	25278	25278					-0.10340492044406346
QPGPMENDG	9	Unmodified	_QPGPMENDG_					0	0	0		ENST00000361547.6_1_1:26144448-26144709:+|nuORF	ENST00000361547.6_1_1:26144448-26144709:+|nuORF	ENST00000361547.6_1_1:26144448-26144709:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	472.692549	943.370546	0.17506	8.275E-05	1.0411	0.00049214	1.2162	0.00057489	472.6929206950817	19.76	0.83356	19.82	19.333	20.167	0.05983	-0.016284	0.0002931	NaN	11.64	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2642000			26318	7359	16763	16851							-0.10340492044406346
QPGQLSPP	8	Unmodified	_QPGQLSPP_					0	0	0		ENST00000425534.7_1_3:71732810-71732897:-|nuORF	ENST00000425534.7_1_3:71732810-71732897:-|nuORF	ENST00000425534.7_1_3:71732810-71732897:-|nuORF	MSMS	HCT116MG_D190212_S1	1	412.2176208496094	2	412.21906	822.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.83	1	25.83	25.33	26.33	0								0	0	0	0.8837	1	9308	9308		5.2307	0.47466	1				26319	7813	16764	16852	25279	25279					0.005252538005606766
QPGRAGPL	8	Unmodified	_QPGRAGPL_					0	0	0		ENST00000379409.6_2_1:906220-907525:+|nuORF	ENST00000379409.6_2_1:906220-907525:+|nuORF	ENST00000379409.6_2_1:906220-907525:+|nuORF	MSMS	HCT116MG_D190212_S4	4	398.2286682128906	2	398.22722	794.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.579	1	34.194	33.694	34.694	-0.38558								0	0	0	0.8837	1	12632	12632		9.3474	0	1				26320	7552	16765	16853	25280	25280					0.03444379757331717
QPGRLGLH	8	Unmodified	_QPGRLGLH_					0	0	0		nc|ENSG00000173085|Q96H96-5|COQ2;nc|ENSG00000173085|Q96H96-4|COQ2	REV__ENST00000536497.2_2_12:2877219-2879590:-|nuORF	REV__ENST00000536497.2_2_12:2877219-2879590:-|nuORF	MSMS	HCT116MG_D190212_S1	1	439.25341796875	2	439.253769	876.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.661	1	32.661	32.161	33.161	0								0	0	0	0.8837	1	12060	12060		5.2307	0.47466	1				26321	9552	16766	16854	25281	25281					0.049797575399907146
QPGTEPLDLHN	11	Unmodified	_QPGTEPLDLHN_					0	0	0		CA14|p.S121Qfs*27|2|0.27|ENSG00000118298|chr1:150262256-150262256|G/-|frameshift_variant;ENST00000607652.5_1_1:150230352-150235277:+|nuORF;ENSG00000118298|ENST00000369111|CA14	CA14|p.S121Qfs*27|2|0.27|ENSG00000118298|chr1:150262256-150262256|G/-|frameshift_variant	CA14|p.S121Qfs*27|2|0.27|ENSG00000118298|chr1:150262256-150262256|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	610.7987670898438	2	610.798934	1219.58332	0.24764	0.00015126	-0.46759	-0.00028561	-0.21996	-0.00013435	610.7988499273175	18.407	0.99083	18.044	17.486	18.477	-0.36325					53	18	4	0	0	0	0.6977	1	6212	6212		22.658	0.85862	1	10769000			26322	296	16767	16855	25282	25282					-0.017692827128939825
QPGVPGVPG	9	Unmodified	_QPGVPGVPG_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;COL4A2|p.P805Lfs*15|1|0.22|ENSG00000134871|chr13:110473134-110473134|C/-|frameshift_variant;COL4A2|p.P1057Lfs*10|1|0.18|ENSG00000134871|chr13:110485794-110485794|C/-|frameshift_variant	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	HCT116MG_D190212_S3	3	807.43603515625	1	807.435929	806.428653	1.0508	0.00084845	-0.46329	-0.00037408	0.5875	0.00047437	807.4354752534279	29.954	0.26649	29.717	29.555	29.822	-0.23655					8	4	2	0	0	0	0.011506	1	10922	10922		109.63	26.69	1	3839100			26323	3311	16768	16856	25283	25283					0.01769557663192245
QPGVPGVPG	9	Unmodified	_QPGVPGVPG_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;COL4A2|p.P805Lfs*15|1|0.22|ENSG00000134871|chr13:110473134-110473134|C/-|frameshift_variant;COL4A2|p.P1057Lfs*10|1|0.18|ENSG00000134871|chr13:110485794-110485794|C/-|frameshift_variant	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	HCT116MG_D190212_S4	4	807.4373168945312	1	807.435929	806.428653	0.87129	0.00070351	-0.20814	-0.00016806	0.66316	0.00053546	807.435661263757	30.123	0.31211	29.766	29.545	29.857	-0.3571					7	5	2	0	0	0	0.026974	1	10925	10925		89.427	6.4873	1	2205500			26324	3311	16768	16856	25284	25284					0.01769557663192245
QPIAEERKY	9	Unmodified	_QPIAEERKY_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	HCT116MG_D190212_S2	2	377.8765563964844	3	378.536501	1132.58767	-0.17406	-6.5887E-05	0.35465	0.00013425	0.18059	6.8361E-05	378.53660661180265	27.84	0.25569	27.498	27.347	27.602	-0.34201					10	4	3	0	0	0	0.2615	1	10167	10167		4.1895	1.1172	1	16382000			26325	6160	16769	16857	25285	25285					0.026682265006684247
QPIDGSPDYQK	11	Unmodified	_QPIDGSPDYQK_					0	0	0		nc|ENSG00000149516|Q96HJ5-2|MS4A3;ENSG00000149516|ENST00000278865|MS4A3	nc|ENSG00000149516|Q96HJ5-2|MS4A3	nc|ENSG00000149516|Q96HJ5-2|MS4A3	MSMS	HCT116MG_D190212_S3	3	624.2989501953125	2	624.298767	1246.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.733	1	26.584	26.084	27.084	-0.14924								0	0	0	0.94493	1	9604	9604		8.9762	1.8745	1				26326	4066	16770	16858	25286	25286					-0.030447024327713734
QPIGKLKELLM	11	Unmodified	_QPIGKLKELLM_					0	0	0			REV__ENSG00000159459|ENST00000290650|UBR1	REV__ENSG00000159459|ENST00000290650|UBR1	MSMS	HCT116MG_D190212_S4	4	635.384765625	2	635.383591	1268.75263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.623	1	42.247	41.747	42.747	-0.37538								0	0	0	0.95581	1	15672	15672		3.2813	1.6287	1		+		26327	12805	16771	16859	25287	25287					0.12900322316113488
QPINRGQP	8	Unmodified	_QPINRGQP_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MSMS	HCT116MG_D190212_S1	1	455.248779296875	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.426	1	31.426	30.926	31.926	0								0	0	0	0.8837	1	11562	11562		5.2307	0.47466	1				26328	3319	16772	16860	25288	25288					0.024911498147503153
QPISQNYTDRI	11	Unmodified	_QPISQNYTDRI_					0	0	0			REV__PWWP2A|p.E335Gfs*3|1|0.22|ENSG00000170234|chr5:160093648-160093649|-/T|frameshift_variant	REV__PWWP2A|p.E335Gfs*3|1|0.22|ENSG00000170234|chr5:160093648-160093649|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	667.8386840820312	2	667.838591	1333.66263	0.57164	0.00038176	0.020987	1.4016E-05	0.59263	0.00039578	667.8385360795974	31.67	0.93488	31.3	30.816	31.751	-0.37026					29	17	2	0	0	0	0.7298	1	11377	11377		10.8	2.644	1	7247800	+		26329	13283	16773	16861	25289	25289					0.009143642412027475
QPKHKREKL	9	Unmodified	_QPKHKREKL_					0	0	0			REV__ENSG00000204954|ENST00000378090|UQCC6	REV__ENSG00000204954|ENST00000378090|UQCC6	MULTI-MSMS	HCT116MG_D190212_S1	1	388.571533203125	3	388.571768	1162.69348	-0.012108	-4.7049E-06	-0.04937	-1.9184E-05	-0.061479	-2.3889E-05	388.57157567904244	54.409	0.20264	54.409	54.282	54.485	0					5	3	2	0	0	0	0.73977	1	20892	20892		2.4985	0	1	35799000	+		26330	14212	16774	16862	25290	25290					0.11863607136797327
QPKHKREKL	9	Unmodified	_QPKHKREKL_					0	0	0			REV__ENSG00000204954|ENST00000378090|UQCC6	REV__ENSG00000204954|ENST00000378090|UQCC6	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	388.571768	1162.69348	-0.012108	-4.7049E-06	-0.04937	-1.9184E-05	-0.061479	-2.3889E-05	388.57157567904244	54.409	0.20264	54.409	54.282	54.485	0	0	0	NaN	2.4985	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35799000	+		26331	14212	16774	16862							0.11863607136797327
QPKIAKKLEKL	11	Unmodified	_QPKIAKKLEKL_					0	0	0			REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	REV__tr|U7T8Q8|U7T8Q8_FUSNUSignalrecognitionparticleproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ffhPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	648.4234619140625	2	648.424105	1294.83366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.045	1	59.793	59.293	60.293	-0.25233								0	0	0	0.95731	1	22882	22882		2.4985	0	1		+		26332	18012	16775	16863	25291	25291					0.19803346350477113
QPKIHGKQ	8	Unmodified	_QPKIHGKQ_					0	0	0		ENST00000477769.1_1_1:111662258-111663219:-|nuORF;ENSG00000156171|ENST00000484310|DRAM2	ENST00000477769.1_1_1:111662258-111663219:-|nuORF	ENST00000477769.1_1_1:111662258-111663219:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	468.2751159667969	2	468.274701	934.534849	0.31402	0.00014705	-0.18782	-8.795E-05	0.1262	5.9097E-05	468.2745703581891	14.463	0.41623	14.463	14.286	14.702	0					12	7	3	0	0	0	0.62424	1	4724	4724		30.225	1.1432	1	4646100			26333	4276	16776	16864	25292	25292					0.06496313228524286
QPKIVKWDRDM	11	Unmodified	_QPKIVKWDRDM_					0	0	0		ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	HCT116MG_D190212_S1	1	472.5870666503906	3	472.586978	1414.7391	0.10172	4.8071E-05	-0.17652	-8.3419E-05	-0.074796	-3.5348E-05	472.58695771120455	32.04	0.26073	32.04	31.909	32.17	0					7	4	2	0	0	0	0.74191	1	11835	11835		5.1984	3.9836	1	13865000			26334	4873	16777	16865	25293	25293					0.04832464536843872
QPKPDYGG	8	Unmodified	_QPKPDYGG_					0	0	0		ENST00000497128.1_1_3:52009151-52020284:+|nuORF	ENST00000497128.1_1_3:52009151-52020284:+|nuORF	ENST00000497128.1_1_3:52009151-52020284:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	861.41064453125	1	861.410108	860.402832	0.6336	0.00054579	0.14808	0.00012755	0.78167	0.00067334	861.4100753051974	32.038	0.36378	31.76	31.578	31.942	-0.27841					10	6	2	0	0	0	0.66231	1	11744	11744		26.884	6.0124	1	6245000			26335	8396	16778	16866	25294	25294					-0.0329533657909451
QPLAIVLKPD	10	Unmodified	_QPLAIVLKPD_					0	0	0		HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|145|3|sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|145|3|sense	HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|145|3|sense	MSMS	HCT116MG_D190212_S4	4	547.3331298828125	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.236	1	61.987	61.487	62.487	-0.24919								0	0	0	0.96453	1	23497	23497		1.4819	0.68827	1				26336	9214	16779	16867	25295	25295					0.11167462062576305
QPLASIIKEVL	11	Unmodified	_QPLASIIKEVL_					0	0	0			REV__SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	REV__SCFD2|p.I526Tfs*7|1|0.18|ENSG00000184178|chr4:52920855-52920856|-/GTCTGTATATG|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	605.871826171875	2	605.873914	1209.73327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.469	1	52.469	51.969	52.969	0								0	0	0	0.95273	1	20069	20069		4.897	3.2444	1		+		26337	13788	16780	16868	25296	25296					0.13679689296850484
QPLHCRQAH	9	Unmodified	_QPLHCRQAH_					0	0	0			REV__ENST00000525366.5_1_11:61112846-61113972:+|nuORF	REV__ENST00000525366.5_1_11:61112846-61113972:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.7904663085938	2	545.272167	1088.52978	0.65312	0.00035613	-1.3794	-0.00075213	-0.72624	-0.000396	545.2715404750415	43.866	0.20621	43.788	43.607	43.813	-0.078373					5	3	2	0	0	0	0.22781	1	16607	16607		16.942	2.104	1	8933300	+		26338	16271	16781	16869	25297	25297					-0.010943139057417284
QPLKDFAEET	10	Unmodified	_QPLKDFAEET_					0	0	0			REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-SECPEP	HCT116MG_D190212_S2	2	588.7573852539062	2	589.290411	1176.56627	0.60635	0.00035731	-2.8586	-0.0016845	-2.2523	-0.0013272	589.2880999117368	17.04	0.25995	16.691	16.509	16.769	-0.34933					9	4	3	0	0	0	0.30526	1	5796	5796		14.838	0.93222	1	4099500	+		26339	11124	16782	16870	25298	25298					-0.014952033187228153
QPLLQRLLHR	10	Unmodified	_QPLLQRLLHR_					0	0	0		ENST00000529787.2_1_9:100092438-100109914:+|nuORF	ENST00000529787.2_1_9:100092438-100109914:+|nuORF	ENST00000529787.2_1_9:100092438-100109914:+|nuORF	MSMS	HCT116MG_D190212_S4	4	425.26702880859375	3	425.266568	1272.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.508	1	44.135	43.635	44.635	-0.37336								0	0	0	0.96263	1	16400	16400		1.9064	0.57673	1				26340	8612	16783	16871	25299	25299					0.15239557953532312
QPLRTLKIFL	10	Unmodified	_QPLRTLKIFL_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MSMS	HCT116MG_D190212_S3	3	410.2647399902344	3	410.264053	1227.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.019	1	30.759	30.259	31.259	-0.26071								0	0	0	0.95511	1	11317	11317		3.5871	0.74377	1		+		26341	13653	16784	16872	25300	25300					0.16555405633266673
QPLSRNQLYFK	11	Unmodified	_QPLSRNQLYFK_					0	0	0			REV__nc|ENSG00000167699|Q9HC38-3|GLOD4	REV__nc|ENSG00000167699|Q9HC38-3|GLOD4	MSMS	HCT116MG_D190212_S1	1	697.2694702148438	2	697.382968	1392.75138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.854	1	30.854	30.354	31.354	0								0	0	0	0.9387	1	11331	11331		12.241	4.6317	1		+		26342	13160	16785	16873	25301	25301					0.07071824271542937
QPLSRNQLYFK	11	Unmodified	_QPLSRNQLYFK_					0	0	0			REV__nc|ENSG00000167699|Q9HC38-3|GLOD4	REV__nc|ENSG00000167699|Q9HC38-3|GLOD4	MSMS	HCT116MG_D190212_S2	2	697.1595458984375	2	697.382968	1392.75138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.344	1	31.095	30.595	31.595	-0.24883								0	0	0	0.94851	1	11559	11559		7.1017	1.8048	1		+		26343	13160	16785	16873	25302	25302					0.07071824271542937
QPMLPILPP	9	Unmodified	_QPMLPILPP_					0	0	0		nc|ENSG00000119321|Q5T1M5-3|FKBP15;FKBP15|p.K665Rfs*9|2|0.21|ENSG00000119321|chr9:113178722-113178722|T/-|frameshift_variant;nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	MULTI-MSMS	HCT116MG_D190212_S4	4	503.2947998046875	2	503.293714	1004.57287	0.44017	0.00022153	0.22494	0.00011321	0.6651	0.00033474	503.293902899433	47.093	0.94372	46.723	46	46.944	-0.37038					33	19	2	0	0	0	0.74607	1	17206	17206		2.0598	2.0598	1	5776400			26344	2632	16786	16874	25303	25303					0.07077063098984127
QPMSPPPPPP	10	Unmodified	_QPMSPPPPPP_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MSMS	HCT116MG_D190212_S4	4	522.7637939453125	2	522.762778	1043.511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.928	1	19.734	19.234	20.234	-0.19367								0	0	0	0.85468	1	6790	6790		21.747	5.8995	1		+		26345	12341	16787	16875	25304	25304					-0.009012883201648947
QPNEDPFS	8	Unmodified	_QPNEDPFS_					0	0	0			REV__ENST00000312184.5_1_8:74894579-74894618:+|nuORF	REV__ENST00000312184.5_1_8:74894579-74894618:+|nuORF	MSMS	HCT116MG_D190212_S1	1	467.201416015625	2	467.201064	932.387576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.405	1	27.405	26.905	27.905	0								0	0	0	0.8837	1	9943	9943		11.64	0	1		+		26346	14841	16788	16876	25305	25305					-0.08132248166941736
QPPKELGPQ	9	Unmodified	_QPPKELGPQ_					0	0	0		ENST00000422066.5_1_3:176782793-176915000:-|nuORF	ENST00000422066.5_1_3:176782793-176915000:-|nuORF	ENST00000422066.5_1_3:176782793-176915000:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	496.7556457519531	2	497.271824	992.529095	0.42098	0.00020934	-0.78988	-0.00039279	-0.3689	-0.00018344	497.2713262113187	45.581	0.31404	45.581	45.399	45.713	0					12	5	3	0	0	0	0.26505	1	17257	17257		3.5965	0	1	9620200			26347	7793	16789	16877	25306	25306					0.03253169926188093
QPPLLRERA	9	Unmodified	_QPPLLRERA_					0	0	0			REV__ENSG00000181965|ENST00000314744|NEUROG1	REV__ENSG00000181965|ENST00000314744|NEUROG1	MSMS	HCT116MG_D190212_S1	1	540.31982421875	2	540.31964	1078.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.391	1	54.391	53.891	54.891	0								0	0	0	0.76978	1	20856	20856		1.6526	0.17072	1		+		26348	13700	16790	16878	25307	25307					0.0885594283708997
QPPPPLTSTV	10	Unmodified	_QPPPPLTSTV_					0	0	0			REV__nc|ENSG00000204314|Q99946-2|PRRT1	REV__nc|ENSG00000204314|Q99946-2|PRRT1	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.7625122070312	2	518.787307	1035.56006	0.28323	0.00014694	-0.15663	-8.1258E-05	0.1266	6.568E-05	518.7872916173559	19.388	0.20867	19.018	18.888	19.096	-0.3695					6	3	2	0	0	0	0.29734	1	6747	6747		13.906	0	1	9615400	+		26349	14189	16791	16879	25308	25308					0.04370323240391372
QPPPPPPPP	9	Unmodified	_QPPPPPPPP_					0	0	0		ENSG00000170145|ENST00000304987|SIK2;NR3C2|p.L875Cfs*4|1|0.38|ENSG00000151623|chr4:148120175-148120175|A/-|frameshift_variant;nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000182263|ENST00000333129|FIGN;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;SETD1A|p.G708Vfs*95|3|0.39|ENSG00000099381|chr16:30965996-30965996|C/-|frameshift_variant;SF3B2|p.P101S|1|0.39|ENSG00000087365|chr11:66055118-66055118|C/T|missense_variant;ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000151623|P08235-3|NR3C2;ENSG00000141867|ENST00000679869|BRD4;ENSG00000181790|ENST00000517894|ADGRB1;ENST00000531589.5_1_11:65819891-65822828:+|nuORF;NR3C2|p.S703N|1|0.26|ENSG00000151623|chr4:148154808-148154808|C/T|missense_variant;PCLO|p.A2403T|1|0.13|ENSG00000186472|chr7:82953746-82953746|C/T|missense_variant;ENST00000397992.5_1_16:73092794-73093010:-|nuORF;ENST00000358635.7_1_4:140005384-140005639:-|nuORF;ENST00000533421.2_1_11:65820160-65823021:+|nuORF;ENST00000519758.5_1_X:47078159-47081683:+|nuORF;ENST00000482108.1_2_7:94293788-94294991:+|nuORF;ENST00000503313.1_1_4:149067883-149122244:-|nuORF;ZNF341|p.T262Qfs*21|1|0.25|ENSG00000131061|chr20:33757185-33757185|C/-|frameshift_variant;FIGN|p.T288Pfs*13|1|0.37|ENSG00000182263|chr2:163610971-163610971|G/-|frameshift_variant;TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant;ENSG00000141232|ENST00000499247|TOB1;TRIM67|p.A342Pfs*14|2|0.22|ENSG00000119283|chr1:231163989-231163989|G/-|frameshift_variant;nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7;nc|ENSG00000138081|Q86XK2-4|FBXO11;FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant;FBXO11|p.F332Lfs*13|1|0.41|ENSG00000138081|chr2:47833009-47833009|A/-|frameshift_variant;HTT|p.N699Mfs*9|2|0.17|ENSG00000197386|chr4:3131390-3131390|A/-|frameshift_variant;HTT|p.P1176Lfs*3|1|0.18|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENSG00000131061|ENST00000375200|ZNF341;nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENSG00000087365|ENST00000322535|SF3B2;PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;PRR12|p.P506Lfs*44|1|0.33|ENSG00000126464|chr19:49599569-49599569|C/-|frameshift_variant;nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;ZNF462|p.R1168Gfs*9|1|0.38|ENSG00000148143|chr9:106927409-106927409|C/-|frameshift_variant;DLX6|p.L238Sfs*55|2|0.14|ENSG00000006377|chr7:97009873-97009873|C/-|frameshift_variant;ENSG00000006377|ENST00000518156|DLX6;ENSG00000108091|ENST00000263102|CCDC6;ENSG00000204612|ENST00000376708|FOXB2;PRDM6|p.N450Tfs*67|1|0.26|ENSG00000061455|chr5:123170957-123170957|A/-|frameshift_variant;ENSG00000061455|ENST00000407847|PRDM6;nc|ENSG00000168066|Q15637-5|SF1;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENST00000393606.7_1_17:42294008-42297052:-|nuORF;sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1;ENSG00000205922|ENST00000382349|ONECUT3;SETD1A|p.L1157Pfs*90|1|0.25|ENSG00000099381|chr16:30979250-30979251|-/C|frameshift_variant;SETD1A|p.S1128Vfs*134|2|0.19|ENSG00000099381|chr16:30979162-30979162|C/-|frameshift_variant;ENSG00000099381|ENST00000262519|SETD1A;ENST00000522234.5_1_X:47078210-47085639:+|nuORF;nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B;PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;ENSG00000186472|ENST00000333891|PCLO;ENSG00000197386|ENST00000355072|HTT	ENSG00000170145|ENST00000304987|SIK2;nc|ENSG00000274211|O14512|SOCS7;ENSG00000131061|ENST00000375200|ZNF341;ENSG00000087365|ENST00000322535|SF3B2;REV__ENSG00000197386|ENST00000355072|HTT;PRR12|p.R352Gfs*50|1|0.13|ENSG00000126464|chr19:49597847-49597847|G/-|frameshift_variant;REV__RBM33|p.P840Qfs*31|1|0.17|ENSG00000184863|chr7:155745138-155745138|C/-|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11;DAB2IP|p.N938Tfs*3|1|0.56|ENSG00000136848|chr9:121773334-121773334|C/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;REV__nc|ENSG00000126464|Q9ULL5-2|PRR12;DLX6|p.L238Sfs*55|2|0.14|ENSG00000006377|chr7:97009873-97009873|C/-|frameshift_variant;ENSG00000108091|ENST00000263102|CCDC6;ENSG00000204612|ENST00000376708|FOXB2;PRDM6|p.N450Tfs*67|1|0.26|ENSG00000061455|chr5:123170957-123170957|A/-|frameshift_variant;nc|ENSG00000168066|Q15637-5|SF1;REV__nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;ENST00000393606.7_1_17:42294008-42297052:-|nuORF;REV__SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant;sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1;ENSG00000205922|ENST00000382349|ONECUT3;SETD1A|p.L1157Pfs*90|1|0.25|ENSG00000099381|chr16:30979250-30979251|-/C|frameshift_variant;ENST00000522234.5_1_X:47078210-47085639:+|nuORF;nc|ENSG00000139718|Q9UPS6-2|SETD1B;PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;ENSG00000197386|ENST00000355072|HTT;REV__TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant;REV__ENSG00000181790|ENST00000517894|ADGRB1	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MSMS	HCT116MG_D190212_S3	3	462.14666748046875	2	462.252903	922.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.7	1	25.573	25.073	26.073	-0.12795								0	0	0	0.768	1	9188	9188		7.9102	0	1				26350	11840;9539;4005;3529;5887;6391;6675;13815;1486;636;3125;18209;689;2146;3642;12325;1371;12272;6141;5116;8563;1635;1117;13029;6343;2938;14069;7625;13697	16792	16880	25309	25309					0.02690703731366284
QPPQTRWV	8	Unmodified	_QPPQTRWV_					0	0	0		nc|ENSG00000149658|Q9BYJ9-2|YTHDF1;ENSG00000149658|ENST00000370339|YTHDF1	nc|ENSG00000149658|Q9BYJ9-2|YTHDF1	nc|ENSG00000149658|Q9BYJ9-2|YTHDF1	MSMS	HCT116MG_D190212_S4	4	506.27105712890625	2	506.272158	1010.52976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.016	1	19.822	19.322	20.322	-0.19367								0	0	0	0.8837	1	6825	6825		5.2307	0.47466	1				26351	4070	16793	16881	25310	25310					0.024920093659034137
QPPRKWFGEQP	11	Unmodified	_QPPRKWFGEQP_					0	0	0			REV__ENST00000494144.5_1_10:86177532-86230140:+|nuORF	REV__ENST00000494144.5_1_10:86177532-86230140:+|nuORF	MSMS	HCT116MG_D190212_S2	2	685.3519897460938	2	685.354211	1368.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.507	1	25.138	24.638	25.638	-0.36914								0	0	0	0.94851	1	9188	9188		7.1017	0.37856	1		+		26352	11324	16794	16882	25311	25311					0.024269820660038022
QPPRKWFGEQP	11	Unmodified	_QPPRKWFGEQP_					0	0	0			REV__ENST00000494144.5_1_10:86177532-86230140:+|nuORF	REV__ENST00000494144.5_1_10:86177532-86230140:+|nuORF	MSMS	HCT116MG_D190212_S3	3	685.3519897460938	2	685.354211	1368.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.864	1	25.736	25.236	26.236	-0.12795								0	0	0	0.94851	1	9253	9253		7.1017	0.37856	1		+		26353	11324	16794	16882	25312	25312					0.024269820660038022
QPPRSDGEA	9	Unmodified	_QPPRSDGEA_					0	0	0			REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	478.7232360839844	2	478.725238	955.435923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.608	1	28.608	28.108	29.108	0								0	0	0	0.67173	1	10426	10426		20.454	1.0146	1		+		26354	14306	16795	16883	25313	25313					-0.043577545270409246
QPPRVGGP	8	Unmodified	_QPPRVGGP_					0	0	0			REV__ENST00000468101.5_1_3:183353437-183368104:+|nuORF	REV__ENST00000468101.5_1_3:183353437-183368104:+|nuORF	MSMS	HCT116MG_D190212_S4	4	404.2276611328125	2	404.22722	806.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.972	1	41.596	41.096	42.096	-0.37637								0	0	0	0.8837	1	15409	15409		2.8892	0	1		+		26355	15840	16796	16884	25314	25314					0.028923797573384036
QPPTHPNG	8	Unmodified	_QPPTHPNG_					0	0	0		USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	424.2077941894531	2	424.206484	846.398415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.094	1	36.094	35.594	36.594	0								0	0	0	0.8837	1	13447	13447		7.9102	0.62092	1				26356	1012	16797	16885	25315	25315					-0.030928010019920293
QPQEWNLGP	9	Unmodified	_QPQEWNLGP_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	HCT116MG_D190212_S2	2	535.2609252929688	2	534.759081	1067.50361	0.40597	0.0002171	-0.4444	-0.00023764	-0.038422	-2.0547E-05	535.2605910238642	16.329	0.36533	15.987	15.839	16.204	-0.34183					6	4	2	0	0	0	0.41881	1	5506	5506		21.537	3.1639	1	10015000	+		26357	10504	16798	16886	25316	25316					-0.027443045962627366
QPQLPSQRPL	10	Unmodified	_QPQLPSQRPL_					0	0	0			REV__ENST00000530298.5_1_1:156845639-156851431:+|nuORF	REV__ENST00000530298.5_1_1:156845639-156851431:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	388.2541198730469	3	388.555895	1162.64586	0.25303	9.8315E-05	0.30728	0.0001194	0.56031	0.00021771	388.5559144554572	31.733	0.25875	31.484	31.354	31.613	-0.24883					8	4	2	0	0	0	0.30991	1	11740	11740		0.69767	0	1	27796000	+		26358	16307	16799	16887	25317	25317					0.071039081459503
QPQNRYTAEE	10	Unmodified	_QPQNRYTAEE_					0	0	0		ENSG00000164776|ENST00000297373|PHKG1;nc|ENSG00000164776|Q16816-2|PHKG1	ENSG00000164776|ENST00000297373|PHKG1	ENSG00000164776|ENST00000297373|PHKG1	MULTI-MSMS	HCT116MG_D190212_S4	4	618.2860107421875	2	618.286191	1234.55783	0.39208	0.00024242	-0.09412	-5.8193E-05	0.29796	0.00018422	618.2864426938345	18.168	0.56944	17.993	17.688	18.257	-0.17501					20	10	3	0	0	0	0.76634	1	6055	6055		14.838	3.198	1	5324500			26359	4720	16800	16888	25318	25318					-0.050067572353327705
QPQPRGVEHQP	11	Unmodified	_QPQPRGVEHQP_					0	0	0		ADAMTSL5|p.P329H|1|0.34|ENSG00000185761|chr19:1506795-1506795|G/T|missense_variant	ADAMTSL5|p.P329H|1|0.34|ENSG00000185761|chr19:1506795-1506795|G/T|missense_variant	ADAMTSL5|p.P329H|1|0.34|ENSG00000185761|chr19:1506795-1506795|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	636.8244018554688	2	636.825818	1271.63708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.039	1	34.653	34.153	35.153	-0.38606								0	0	0	0.94012	1	12818	12818		11.495	3.8858	1				26360	54	16801	16889	25319	25319					0.01212934509499064
QPQQKYTPI	9	Unmodified	_QPQQKYTPI_					0	0	0			REV__MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|14|2|sense	REV__MER49_dup1305|chr21:41210187-41211078:+|1.209497246225798|0.4412608656295442|1.45|483.0|14|2|sense	MULTI-SECPEP	HCT116MG_D190212_S1	1	551.318115234375	2	551.798206	1101.58186	0.80024	0.00044157	0.5065	0.00027948	1.3067	0.00072105	551.7984684621747	41.472	0.20863	41.472	41.289	41.498	0					5	3	2	0	0	0	0.26328	1	15621	15621		1.8442	1.3859	1	5423000	+		26361	17018	16802	16890	25320	25320					0.03513127989003806
QPQQPQQQRQP	11	Unmodified	_QPQQPQQQRQP_					0	0	0		DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	454.6905212402344	3	454.900613	1361.68001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.691	1	15.776	15.276	16.276	0.085423								0	0	0	0.95422	1	5153	5153		4.1166	0	1				26362	676	16803	16891	25321	25321					0.013637045669156578
QPQQQQPQ	8	Unmodified	_QPQQQQPQ_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;TNRC6A|p.E1066Sfs*20|1|0.3|ENSG00000090905|chr16:24793488-24793488|G/-|frameshift_variant;nc|ENSG00000292995|Q17RH7|TPRXL;ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant;ENSG00000052850|ENST00000652299|ALX4	nc|ENSG00000090905|Q8NDV7-6|TNRC6A;ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MULTI-SECPEP	HCT116MG_D190212_S3	3	490.7561950683594	2	491.241055	980.467557	0.10099	4.9612E-05	-1.074	-0.00052758	-0.97298	-0.00047797	491.2416055368102	19.854	0.31252	19.906	19.691	20.003	0.052374					7	5	2	0	0	0	0.26661	1	6849	6849		24.674	0	1	2201000			26363	1548;120	16804	16892	25322	25322					-0.023457617730855418
QPQQQQPQ	8	Unmodified	_QPQQQQPQ_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;TNRC6A|p.E1066Sfs*20|1|0.3|ENSG00000090905|chr16:24793488-24793488|G/-|frameshift_variant;nc|ENSG00000292995|Q17RH7|TPRXL;ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant;ENSG00000052850|ENST00000652299|ALX4	nc|ENSG00000090905|Q8NDV7-6|TNRC6A;ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MULTI-MATCH	HCT116MG_D190212_S2	2		2	491.241055	980.467557	0.27359	0.0001344	0.87347	0.00042908	1.1471	0.00056348	491.2411249690049	20.619	0.21173	20.239	20.13	20.342	-0.37949	0.16649	0.000371	NaN	18.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4214000			26364	1548;120	16804	16892							-0.023457617730855418
QPQSPQSAP	9	Unmodified	_QPQSPQSAP_					0	0	0			REV__ENSG00000064218|ENST00000190165|DMRT3	REV__ENSG00000064218|ENST00000190165|DMRT3	MULTI-MSMS	HCT116MG_D190212_S3	3	939.4547119140625	1	939.453036	938.445759	0.65597	0.00061626	-0.091773	-8.6216E-05	0.5642	0.00053004	939.4529567015995	25.023	0.67706	24.917	24.579	25.256	-0.10618					21	12	2	0	0	0	0.2853	1	8865	8865		32.305	2.4649	1	5915700	+		26365	10685	16805	16893	25323	25323					-0.025925665216618654
QPQSPQSAP	9	Unmodified	_QPQSPQSAP_					0	0	0			REV__ENSG00000064218|ENST00000190165|DMRT3	REV__ENSG00000064218|ENST00000190165|DMRT3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	939.453036	938.445759	0.65597	0.00061626	-0.091773	-8.6216E-05	0.5642	0.00053004	939.4529567015995	25.023	0.67706	24.917	24.579	25.256	-0.10618	0.11364	-9.0694E-05	NaN	32.305	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5915700	+		26366	10685	16805	16893							-0.025925665216618654
QPRADAAAPGP	11	Unmodified	_QPRADAAAPGP_					0	0	0		ENST00000602321.5_1_16:67682228-67682996:+|nuORF	ENST00000602321.5_1_16:67682228-67682996:+|nuORF	ENST00000602321.5_1_16:67682228-67682996:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.2678833007812	2	525.76998	1049.52541	0.27428	0.00014421	-0.10652	-5.6007E-05	0.16775	8.82E-05	525.7698489624255	18.152	0.26095	17.796	17.65	17.91	-0.35647					7	4	2	0	0	0	0.36112	1	6200	6200		15.248	5.8654	1	2857000			26367	9096	16806	16894	25324	25324					0.0026250015232562873
QPRDGVKVPE	10	Unmodified	_QPRDGVKVPE_					0	0	0		ENST00000318291.4_1_12:752234-753264:+|nuORF	ENST00000318291.4_1_12:752234-753264:+|nuORF	ENST00000318291.4_1_12:752234-753264:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	564.3494873046875	2	562.806562	1123.59857	0.66781	0.00037585	0.030079	1.6928E-05	0.69789	0.00039278	562.8065250951857	28.651	0.36905	28.651	28.482	28.851	0					17	6	4	0	0	0	0.8392	1	10461	10461		8.7454	1.4562	1	46594000			26368	7089	16807	16895	25325	25325					0.04171628874951239
QPRPPPLP	8	Unmodified	_QPRPPPLP_					0	0	0		CPNE9|p.P541Lfs*56|1|0.2|ENSG00000144550|chr3:9729648-9729648|C/-|frameshift_variant	CPNE9|p.P541Lfs*56|1|0.2|ENSG00000144550|chr3:9729648-9729648|C/-|frameshift_variant	CPNE9|p.P541Lfs*56|1|0.2|ENSG00000144550|chr3:9729648-9729648|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	451.2663269042969	2	451.266345	900.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.303	1	23.303	22.803	23.803	0								0	0	0	0.8837	1	8292	8292		14.582	0	1				26369	593	16808	16896	25326	25326					0.06389812342570167
QPRPWRKP	8	Unmodified	_QPRPWRKP_					0	0	0		ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	MSMS	HCT116MG_D190212_S1	1	532.860595703125	2	532.809242	1063.60393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.346	1	11.346	10.846	11.846	0								0	0	0	0.8837	1	3563	3563		0.79363	0	1				26370	5961	16809	16897	25327	25327					0.07467397248069574
QPRRGYPRRMY	11	Unmodified	_QPRRGYPRRMY_					0	0	0			REV__ENSG00000065978|ENST00000321358|YBX1	REV__ENSG00000065978|ENST00000321358|YBX1	MSMS	HCT116MG_D190212_S4	4	740.3953857421875	2	740.391136	1478.76772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.274	1	31.897	31.397	32.397	-0.37711								0	0	0	0.95686	1	11748	11748		2.7352	0.23671	1		+		26371	10708	16810	16898	25328	25328					0.047486269566661576
QPRRRWWWLQR	11	Unmodified	_QPRRRWWWLQR_					0	0	0		ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	MSMS	HCT116MG_D190212_S1	1	834.4573974609375	2	834.460742	1666.90693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.797	1	40.797	40.297	41.297	0								0	0	0	0.9598	1	15344	15344		1.1933	0.88631	1				26372	9033	16811	16899	25329	25329					0.10015332636339735
QPRRRWWWLQR	11	Unmodified	_QPRRRWWWLQR_					0	0	0		ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	MSMS	HCT116MG_D190212_S2	2	834.4583129882812	2	834.460742	1666.90693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.863	1	40.793	40.293	41.293	-0.069626								0	0	0	0.96157	1	15423	15423		0.26902	0.26902	1				26373	9033	16811	16899	25330	25330					0.10015332636339735
QPRVTSVYI	9	Unmodified	_QPRVTSVYI_					0	0	0			REV__CACHD1|p.Q1185Sfs*23|1|0.37|ENSG00000158966|chr1:64691433-64691434|-/C|frameshift_variant	REV__CACHD1|p.Q1185Sfs*23|1|0.37|ENSG00000158966|chr1:64691433-64691434|-/C|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	355.06976318359375	3	354.869591	1061.58694	-0.090733	-3.2198E-05	0.51332	0.00018216	0.42259	0.00014996	354.86975519085854	26.704	0.20849	26.704	26.605	26.813	0					5	3	2	0	0	0	0.2622	1	9697	9697		1.0715	0	1	3169300	+		26374	10074	16812	16900	25331	25331					0.05861431851622001
QPRWVSHLYYQ	11	Unmodified	_QPRWVSHLYYQ_					0	0	0			REV__ENST00000575325.1_1_18:50073-73351:-|nuORF	REV__ENST00000575325.1_1_18:50073-73351:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	492.58209228515625	3	492.917604	1475.73098	0.21783	0.00010737	-3.363	-0.0016577	-3.1452	-0.0015503	492.9156608282569	21.255	0.20774	21.045	20.915	21.123	-0.20959					5	3	2	0	0	0	0.3648	1	7352	7352		0.073264	0	1	1660400	+		26375	16602	16813	16901	25332	25332					0.012146536117597861
QPSCCCCCCGH	11	Unmodified	_QPSCCCCCCGH_					0	0	0		ENST00000483722.1_1_6:41166134-41168799:-|nuORF	ENST00000483722.1_1_6:41166134-41168799:-|nuORF	ENST00000483722.1_1_6:41166134-41168799:-|nuORF	MSMS	HCT116MG_D190212_S1	1	572.1522216796875	2	572.151985	1142.28942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.062	1	41.062	40.562	41.562	0								0	0	0	0.96149	1	15451	15451		0.30703	0.30703	1				26376	8275	16814	16902	25333	25333					-0.2760362193796482
QPSGGELRYTS	11	Unmodified	_QPSGGELRYTS_					0	0	0		ENST00000461049.1_1_3:169780199-169780457:+|nuORF	ENST00000461049.1_1_3:169780199-169780457:+|nuORF	ENST00000461049.1_1_3:169780199-169780457:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	597.7910766601562	2	597.791109	1193.56767	0.32381	0.00019357	0.45935	0.0002746	0.78316	0.00046817	597.790961023953	17.341	0.83251	17.422	16.857	17.69	0.081358					28	15	2	0	0	0	0.59843	1	5721	5721		35.612	5.7717	1	5177000			26377	8049	16815	16903	25334	25334					-0.021375692299670845
QPSGGELRYTS	11	Unmodified	_QPSGGELRYTS_					0	0	0		ENST00000461049.1_1_3:169780199-169780457:+|nuORF	ENST00000461049.1_1_3:169780199-169780457:+|nuORF	ENST00000461049.1_1_3:169780199-169780457:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	597.7906494140625	2	597.791109	1193.56767	0.79072	0.00047268	-0.18249	-0.00010909	0.60823	0.0003636	597.7906626145046	17.629	0.72469	17.458	16.915	17.64	-0.17047					23	13	2	0	0	0	0.70836	1	5726	5726		18.721	1.6083	1	3926300			26378	8049	16815	16903	25335	25335					-0.021375692299670845
QPSLHLEEPQ	10	Unmodified	_QPSLHLEEPQ_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	HCT116MG_D190212_S3	3	589.2965087890625	2	589.296027	1176.5775	0.63203	0.00037245	-0.01461	-8.6098E-06	0.61742	0.00036384	589.2958977713168	27.801	0.67636	27.613	27.309	27.985	-0.18847					21	12	3	0	0	0	0.85279	1	9997	9997		7.609	0.31972	1	7058600	+		26379	13151	16816	16904	25336	25336					-0.00372381224565288
QPSQGQPPGQ	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))QPSQGQPPGQ_					1	0	0			REV__ENSG00000134551|ENST00000396400|PRH2	REV__ENSG00000134551|ENST00000396400|PRH2	MSMS	HCT116MG_D190212_S3	3	533.2522583007812	2	533.25162	1064.48869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.768	1	18.837	18.337	19.337	0.069159								0	0	0	0.57395	1	6395	6395		43.982	7.4756	1		+		26380	12060	16817	16905	25337	25337					-0.04097796464225212
QPSQGQPPGQ	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))QPSQGQPPGQ_					1	0	0			REV__ENSG00000134551|ENST00000396400|PRH2	REV__ENSG00000134551|ENST00000396400|PRH2	MULTI-MSMS	HCT116MG_D190212_S4	4	533.2516479492188	2	533.25162	1064.48869	0.39869	0.0002126	-0.099809	-5.3223E-05	0.29888	0.00015938	533.2515701034848	19.221	0.98772	19.035	18.453	19.441	-0.18674					24	18	2	0	0	0	0.28966	1	6505	6505		51.415	14.909	1	2288000	+		26381	12060	16817	16905	25338	25338					-0.04097796464225212
QPSQLETVY	9	Unmodified	_QPSQLETVY_					0	0	0			REV__ENST00000589239.5_1_19:14080804-14104655:-|nuORF	REV__ENST00000589239.5_1_19:14080804-14104655:-|nuORF	MSMS	HCT116MG_D190212_S4	4	355.51409912109375	3	355.513473	1063.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.218	1	25.923	25.423	26.423	-0.29467								0	0	0	0.7689	1	9329	9329		2.7352	0.23671	1		+		26382	11977	16818	16906	25339	25339					-0.010628575189002731
QPSSHVPL	8	Unmodified	_QPSSHVPL_					0	0	0			REV__ENST00000595476.1_1_19:39869154-39871842:+|nuORF	REV__ENST00000595476.1_1_19:39869154-39871842:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	432.2802734375	2	432.732335	863.450116	0.17804	7.7044E-05	0.348	0.00015059	0.52604	0.00022764	432.7323028062702	30.292	0.27589	29.935	29.753	30.029	-0.3571					6	5	2	0	0	0	0.33021	1	10906	10906		2.5775	0	1	9682800	+		26383	13630	16819	16907	25340	25340					0.012929426919072284
QPSTFSENEY	10	Unmodified	_QPSTFSENEY_					0	0	0		ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	MSMS	HCT116MG_D190212_S4	4	601.2557373046875	2	601.254025	1200.4935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.196	1	45.824	45.324	46.324	-0.37206								0	0	0	0.90291	1	17057	17057		15.248	0.41021	1				26384	3632	16820	16908	25341	25341					-0.0987295711211118
QPTAEPHGP	9	Unmodified	_QPTAEPHGP_					0	0	0		CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	467.22479248046875	2	467.224874	932.435195	0.25541	0.00011933	-0.35437	-0.00016557	-0.098955	-4.6234E-05	467.2245795429785	21.74	1.101	21.758	21.115	22.216	0.018446					33	20	2	0	0	0	0.41514	1	7511	7511		21.747	0	1	4695300			26385	307	16821	16909	25342	25342					-0.03372549176094708
QPTGSGLGGAP	11	Unmodified	_QPTGSGLGGAP_					0	0	0		ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	MSMS	HCT116MG_D190212_S4	4	471.23736572265625	2	471.237981	940.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.57	1	22.332	21.832	22.832	-0.23758								0	0	0	0.91433	1	7858	7858		18.146	3.3081	1				26386	7204	16822	16910	25343	25343					-0.011202800046135053
QPTVQDNENP	10	Unmodified	_QPTVQDNENP_					0	0	0			REV__ENSG00000268738|ENST00000598963|HSFX2	REV__ENSG00000268738|ENST00000598963|HSFX2	MSMS	HCT116MG_D190212_S1	1	571.259033203125	2	571.259642	1140.50473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.657	1	26.657	26.157	27.157	0								0	0	0	0.90291	1	9641	9641		12.241	0	1		+		26387	13331	16823	16911	25344	25344					-0.05990135017987086
QPTWVTLFLP	10	Unmodified	_QPTWVTLFLP_					0	0	0		ITGA10|p.P422Lfs*50|1|0.39|ENSG00000143127|chr1:145901906-145901906|G/-|frameshift_variant	ITGA10|p.P422Lfs*50|1|0.39|ENSG00000143127|chr1:145901906-145901906|G/-|frameshift_variant	ITGA10|p.P422Lfs*50|1|0.39|ENSG00000143127|chr1:145901906-145901906|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	601.33447265625	2	601.334424	1200.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.355	1	61.213	60.713	61.713	-0.14227								0	0	0	0.95507	1	23763	23763		3.5965	0.31518	1				26388	9247	16824	16912	25345	25345					0.06199462062568273
QPVKYILFK	9	Unmodified	_QPVKYILFK_					0	0	0			REV__COL17A1|p.P847Qfs*219|1|0.17|ENSG00000065618|chr10:104042431-104042431|G/-|frameshift_variant	REV__COL17A1|p.P847Qfs*219|1|0.17|ENSG00000065618|chr10:104042431-104042431|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	379.24359130859375	3	379.233982	1134.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.601	1	26.3	25.8	26.8	-0.30087								0	0	0	0.76967	1	9484	9484		1.0715	0	1		+		26389	10225	16825	16913	25346	25346					0.11816356304848341
QPVTGTEGAFY	11	Unmodified	_QPVTGTEGAFY_					0	0	0		nc|ENSG00000071282|Q9NZU5-2|LMCD1;ENSG00000071282|ENST00000157600|LMCD1	nc|ENSG00000071282|Q9NZU5-2|LMCD1	nc|ENSG00000071282|Q9NZU5-2|LMCD1	MULTI-MSMS	HCT116MG_D190212_S1	1	390.5201110839844	3	390.520628	1168.54005	-0.074967	-2.9276E-05	0.038633	1.5087E-05	-0.036334	-1.4189E-05	390.5204471026244	27.851	0.26039	27.851	27.696	27.956	0					10	4	3	0	0	0	0.71271	1	10124	10124		9.7643	0	1	18766000			26390	1253	16826	16914	25347	25347					-0.037474724901812806
QPYYSQQP	8	Unmodified	_QPYYSQQP_					0	0	0		ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant;ARID1B|p.K1095Rfs*9|1|0.39|ENSG00000049618|chr6:157181155-157181156|AA/-|frameshift_variant;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B;nc|ENSG00000049618|Q8NFD5-1|ARID1B	ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant;REV__ENSG00000170248|ENST00000307296|PDCD6IP	ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	505.730224609375	2	505.732532	1009.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.598	1	18.417	17.917	18.917	-0.18052								0	0	0	0.67883	1	6253	6253		32.305	7.6316	1				26391	185;13285	16827	16915	25348	25348					-0.05383682378908361
QQARDGLQFE	10	Unmodified	_QQARDGLQFE_					0	0	0			REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	MULTI-MSMS	HCT116MG_D190212_S4	4	596.2919921875	2	596.291276	1190.568	0.96871	0.00057763	-0.49913	-0.00029763	0.46958	0.00028001	596.2910142217979	26.162	0.88423	25.872	25.62	26.504	-0.29023					23	16	2	0	0	0	0.77749	1	9287	9287		13.906	1.6654	1	4518200	+		26392	13659	16828	16916	25349	25349					-0.019661495100763204
QQCGGAPH	8	Unmodified	_QQCGGAPH_					0	0	0			REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF	REV__ENST00000594213.5_1_19:6380294-6381826:-|nuORF	MSMS	HCT116MG_D190212_S3	3	399.1705017089844	2	399.171587	796.328621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.313	1	58.044	57.544	58.544	-0.26932								0	0	0	0.8837	1	22180	22180		2.8892	0.31174	1		+		26393	16711	16829	16917	25350	25350					-0.07769002942268344
QQEEVTQDV	9	Unmodified	_QQEEVTQDV_					0	0	0			REV__ARAP2|p.H189Q|1|0.19|ENSG00000047365|chr4:36228920-36228920|G/C|missense_variant	REV__ARAP2|p.H189Q|1|0.19|ENSG00000047365|chr4:36228920-36228920|G/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	538.7504272460938	2	538.248743	1074.48293	0.059678	3.2122E-05	0.1958	0.00010539	0.25548	0.00013751	538.2488356138379	17.282	0.41327	17.111	16.915	17.329	-0.17047					13	7	2	0	0	0	0.37539	1	5723	5723		24.021	0.23079	1	2450300	+		26394	9969	16830	16918	25351	25351					-0.05132939766576783
QQEKKRNP	8	Unmodified	_QQEKKRNP_					0	0	0		TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant	TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant	TTC3|p.E1565Rfs*14|1|0.21|ENSG00000182670|chr21:37182840-37182841|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	514.2847290039062	2	514.285797	1026.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.581	1	22.563	22.063	23.063	-0.018869								0	0	0	0.82692	1	7930	7930		20.454	2.3073	1				26395	18672	16831	16919	25352	25352					0.044824929062770025
QQEQSPPPPPP	11	Unmodified	_QQEQSPPPPPP_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MSMS	HCT116MG_D190212_S4	4	601.2968139648438	2	601.296027	1200.5775	1.1963	0.00071935	-0.6699	-0.00040281	0.52642	0.00031653	601.2955499130658	32.27	1.3954	31.893	31.225	32.62	-0.37675					40	26	2	0	0	0	0.70691	1	11870	11870		19.257	2.1441	1	7553600	+		26396	13520	16832	16920	25353	25353					-0.014763812245746522
QQIQENGL	8	Unmodified	_QQIQENGL_					0	0	0		nc|ENSG00000119283|Q6ZTA4-2|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	MULTI-MSMS	HCT116MG_D190212_S3	3	465.23834228515625	2	465.237981	928.461409	0.1272	5.918E-05	-0.12131	-5.6436E-05	0.0058976	2.7438E-06	465.2379602713423	17.895	0.26008	17.976	17.846	18.106	0.081358					7	4	2	0	0	0	0.67912	1	6061	6061		25.399	0.40835	1	1625800			26397	9436	16833	16921	25354	25354					-0.005682800046201919
QQLAPQLVTIP	11	Unmodified	_QQLAPQLVTIP_					0	0	0			REV__ENSG00000156521|ENST00000287078|TYSND1	REV__ENSG00000156521|ENST00000287078|TYSND1	MSMS	HCT116MG_D190212_S4	4	604.354736328125	2	604.355888	1206.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.862	1	42.487	41.987	42.987	-0.37493								0	0	0	0.95113	1	15769	15769		5.7319	2.1354	1		+		26398	12726	16834	16922	25355	25355					0.10214232120006272
QQLATLIQKI	10	Unmodified	_QQLATLIQKI_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MSMS	HCT116MG_D190212_S3	3	578.3568115234375	2	578.358431	1154.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.822	1	58.558	58.058	59.058	-0.26405								0	0	0	0.96453	1	22385	22385		1.4819	0.15237	1				26399	4885	16835	16923	25356	25356					0.1311453598261778
QQLATLIQKI	10	Unmodified	_QQLATLIQKI_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MSMS	HCT116MG_D190212_S4	4	578.356689453125	2	578.358431	1154.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.832	1	58.549	58.049	59.049	-0.28305								0	0	0	0.96453	1	22123	22123		1.4819	0.15237	1				26400	4885	16835	16923	25357	25357					0.1311453598261778
QQLDSKFLEQV	11	Unmodified	_QQLDSKFLEQV_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	HCT116MG_D190212_S2	2	667.8505859375	2	667.851167	1333.68778	0.60727	0.00040557	0.40023	0.00026729	1.0075	0.00067286	667.8511886709641	46.557	0.25707	46.445	46.265	46.522	-0.11121					10	4	3	0	0	0	0.15462	1	17755	17755		80.676	40.437	1	34308000			26401	2467	16836	16924	25358	25358					0.034284190437801954
QQLEIRNMSWP	11	Unmodified	_QQLEIRNMSWP_					0	0	0		PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant;ENSG00000204481|ENST00000334600|PRAMEF14	PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant	PRAMEF14|p.H283Afs*56|1|0.3|ENSG00000204481|chr1:13344057-13344058|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	701.3526000976562	2	701.350811	1400.68707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.949	1	16.034	15.534	16.534	0.085424								0	0	0	0.9465	1	5257	5257		8.1555	0	1				26402	6337	16837	16925	25359	25359					0.002753011231106939
QQLGKVVQV	9	Unmodified	_QQLGKVVQV_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	499.8038330078125	2	499.803291	997.59203	0.48903	0.00024442	-0.13207	-6.6008E-05	0.35696	0.00017841	499.8032026322734	33.374	0.41436	33.374	33.244	33.659	0					10	7	2	0	0	0	0.007119	1	12358	12358		120.45	0	1	35433000			26403	8377	16838	16926	25360	25360					0.09313735714238192
QQLGKVVQV	9	Unmodified	_QQLGKVVQV_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	499.80340576171875	2	499.803291	997.59203	0.64519	0.00032247	-0.03075	-1.5369E-05	0.61444	0.0003071	499.80314555525933	33.649	0.25868	33.456	33.276	33.534	-0.19297					10	4	3	0	0	0	0.0060607	1	12498	12498		128.37	0	1	115130000			26404	8377	16838	16926	25361	25361					0.09313735714238192
QQLPKPKRRRL	11	Unmodified	_QQLPKPKRRRL_					0	0	0		ENSG00000233232|ENST00000452313|NPIPB7;ENSG00000198156|ENST00000695563|NPIPB6;ENSG00000255524|ENST00000683297|NPIPB8;ENSG00000196993|ENST00000357796|NPIPB9;ENSG00000196436|ENST00000692376|NPIPB15	ENSG00000233232|ENST00000452313|NPIPB7	ENSG00000233232|ENST00000452313|NPIPB7	MSMS	HCT116MG_D190212_S4	4	710.9203491210938	2	710.454594	1418.89463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.891	1	47.522	47.022	48.022	-0.36907								0	0	0	0.95196	1	17718	17718		5.2969	0.39987	1				26405	6513	16839	16927	25362	25362					0.20194296173303883
QQLQALLLKRF	11	Unmodified	_QQLQALLLKRF_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	679.28125	2	679.419354	1356.82415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.084	1	34.926	34.426	35.426	-0.15834								0	0	0	0.95954	1	13075	13075		1.3295	0.13619	1				26406	5	16840	16928	25363	25363					0.16001578064947353
QQLTQQLEQ	9	Unmodified	_QQLTQQLEQ_					0	0	0			REV__nc|ENSG00000178209|Q15149|PLEC	REV__nc|ENSG00000178209|Q15149|PLEC	MSMS	HCT116MG_D190212_S4	4	558.288818359375	2	558.288202	1114.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.052	1	23.793	23.293	24.293	-0.25816								0	0	0	0.76694	1	8454	8454		11.64	0	1		+		26407	17228	16841	16929	25364	25364					0.009153322583642876
QQNGWDWR	8	Unmodified	_QQNGWDWR_					0	0	0		L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|11|2|sense	L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|11|2|sense	L1PB4_dup3416|chr8:37568340-37568872:-|1.5609702491558273|0.0696235306653889|4.49|476.0|11|2|sense	MULTI-SECPEP	HCT116MG_D190212_S2	2	545.7334594726562	2	545.246672	1088.47879	0.42567	0.0002321	-1.0739	-0.00058556	-0.64827	-0.00035347	545.2461149594911	23.397	0.20689	23.011	22.882	23.089	-0.3852					5	3	2	0	0	0	0.2951	1	8299	8299		24.021	2.2739	1	6261200			26408	9290	16842	16930	25365	25365					-0.06190939678981522
QQPEAAGPQP	10	Unmodified	_QQPEAAGPQP_					0	0	0			REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	511.7725830078125	2	511.748713	1021.48287	0.15152	7.7541E-05	0.25143	0.00012867	0.40295	0.00020621	511.7488109689471	19.455	0.62502	19.515	19.229	19.854	0.05983					31	11	4	0	0	0	0.23765	1	6738	6738		41.956	5.4494	1	28815000	+		26409	15489	16843	16931	25366	25366					-0.02700894975907886
QQPEAAGPQP	10	Unmodified	_QQPEAAGPQP_					0	0	0			REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	511.7726135253906	2	511.748713	1021.48287	0.20096	0.00010284	0.15649	8.0084E-05	0.35745	0.00018292	511.74876406361795	19.602	0.87403	19.408	19.122	19.996	-0.19367					22	16	2	0	0	0	0.2176	1	6740	6740		34.932	7.7088	1	22784000	+		26410	15489	16843	16931	25367	25367					-0.02700894975907886
QQPRLTAW	8	Unmodified	_QQPRLTAW_					0	0	0		ENSG00000166199|ENST00000302708|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	MSMS	HCT116MG_D190212_S4	4	500.7530212402344	2	500.272158	998.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.433	1	38.051	37.551	38.551	-0.38163								0	0	0	0.8837	1	14085	14085		9.3474	1.4373	1				26411	4828	16844	16932	25368	25368					0.03044009365896727
QQQGPPSGPQ	10	Unmodified	_QQQGPPSGPQ_					0	0	0		ARID1A|p.Q766Pfs*51|1|0.37|ENSG00000117713|chr1:26762190-26762191|-/C|frameshift_variant;ARID1A|p.K1072Nfs*21|3|0.25|ENSG00000117713|chr1:26771131-26771131|A/-|frameshift_variant;ARID1A|p.V2244Gfs*34|1|0.31|ENSG00000117713|chr1:26780626-26780627|-/G|frameshift_variant;ARID1A|p.F2141Sfs*59|5|0.26|ENSG00000117713|chr1:26780313-26780313|C/-|frameshift_variant;ARID1A|p.P2114Rfs*21|1|0.46|ENSG00000117713|chr1:26780236-26780236|C/-|frameshift_variant;nc|ENSG00000117713|O14497-2|ARID1A;ARID1A|p.P1568Lfs*44|1|0.14|ENSG00000117713|chr1:26774926-26774926|C/-|frameshift_variant;ARID1A|p.P1575Hfs*37|1|0.38|ENSG00000117713|chr1:26774947-26774947|C/-|frameshift_variant;ARID1A|p.M1564Hfs*8|1|0.18|ENSG00000117713|chr1:26774910-26774911|-/C|frameshift_variant;ARID1A|p.N1475Tfs*6|1|0.36|ENSG00000117713|chr1:26774648-26774648|A/-|frameshift_variant;ARID1A|p.P1326Rfs*155|1|0.15|ENSG00000117713|chr1:26773685-26773685|C/-|frameshift_variant;ARID1A|p.P1406Rfs*37|1|0.42|ENSG00000117713|chr1:26774444-26774448|CCCCA/-|frameshift_variant;ARID1A|p.K1161Sfs*19|1|0.29|ENSG00000117713|chr1:26772573-26772573|A/-|frameshift_variant;ARID1A|p.P1115Qfs*46|1|0.32|ENSG00000117713|chr1:26771260-26771260|C/-|frameshift_variant;ARID1A|p.A1077Gfs*28|1|0.28|ENSG00000117713|chr1:26771148-26771149|-/G|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A	ARID1A|p.Q766Pfs*51|1|0.37|ENSG00000117713|chr1:26762190-26762191|-/C|frameshift_variant	ARID1A|p.Q766Pfs*51|1|0.37|ENSG00000117713|chr1:26762190-26762191|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2462768554688	2	512.246338	1022.47812	0.10586	5.4226E-05	0.20477	0.00010489	0.31063	0.00015912	512.2463833300347	16.275	1.561	16.361	15.612	17.174	0.085424					65	29	3	0	0	0	0.52513	1	5543	5543		33.445	0	1	15283000			26412	183	16845	16933	25369	25369					-0.03221779118655377
QQQGRLDK	8	Unmodified	_QQQGRLDK_					0	0	0		ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF;nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74	ENST00000517791.1_1_5:149786694-149792396:-|nuORF	ENST00000517791.1_1_5:149786694-149792396:-|nuORF	MSMS	HCT116MG_D190212_S2	2	486.75384521484375	2	486.764697	971.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.478	1	19.109	18.609	19.609	-0.3695								0	0	0	0.79325	1	6756	6756		23.148	0	1				26413	939	16846	16934	25370	25370					0.027945174978981413
QQQPQSPQ	8	Unmodified	_QQQPQSPQ_					0	0	0		nc|ENSG00000143502|Q5VX71-4|SUSD4;nc|ENSG00000143502|Q5VX71-3|SUSD4;SUSD4|p.P412Qfs*51|2|0.24|ENSG00000143502|chr1:223223458-223223458|G/-|frameshift_variant;nc|ENSG00000143502|Q5VX71-2|SUSD4;ENSG00000143502|ENST00000366878|SUSD4	nc|ENSG00000143502|Q5VX71-4|SUSD4	nc|ENSG00000143502|Q5VX71-4|SUSD4	MULTI-MSMS	HCT116MG_D190212_S3	3	940.4476928710938	1	940.448285	939.441008	0.4207	0.00039565	-0.080313	-7.5531E-05	0.34039	0.00032012	940.4477198683364	16.813	0.26018	16.898	16.756	17.016	0.084467					7	4	2	0	0	0	0.51336	1	5628	5628		39.957	1.7818	1	1306500			26414	3816	16847	16935	25371	25371					-0.03113450664420725
QQQQDQQNTQR	11	Unmodified	_QQQQDQQNTQR_					0	0	0		nc|ENSG00000162761|Q8TE12-2|LMX1A;LMX1A|p.S344Kfs*5|1|0.06|ENSG00000162761|chr1:165204000-165204001|-/TTTT|frameshift_variant;ENSG00000162761|ENST00000342310|LMX1A	nc|ENSG00000162761|Q8TE12-2|LMX1A	nc|ENSG00000162761|Q8TE12-2|LMX1A	MSMS	HCT116MG_D190212_S1	1	467.8869934082031	3	467.887032	1400.63927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.862	1	11.862	11.362	12.362	0								0	0	0	0.96208	1	3770	3770		0	0	1				26415	4553	16848	16936	25372	25372					-0.04502681543385734
QQQQDQQNTQR	11	Unmodified	_QQQQDQQNTQR_					0	0	0		nc|ENSG00000162761|Q8TE12-2|LMX1A;LMX1A|p.S344Kfs*5|1|0.06|ENSG00000162761|chr1:165204000-165204001|-/TTTT|frameshift_variant;ENSG00000162761|ENST00000342310|LMX1A	nc|ENSG00000162761|Q8TE12-2|LMX1A	nc|ENSG00000162761|Q8TE12-2|LMX1A	MSMS	HCT116MG_D190212_S1	1	467.8870544433594	3	467.887032	1400.63927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.934	1	12.934	12.434	13.434	0								0	0	0	0.96208	1	4177	4177		0	0	1				26416	4553	16848	16936	25373	25373					-0.04502681543385734
QQQQQNKDGK	10	Unmodified	_QQQQQNKDGK_					0	0	0			REV__nc|ENSG00000155111|Q9BWU1-2|CDK19	REV__nc|ENSG00000155111|Q9BWU1-2|CDK19	MULTI-SECPEP	HCT116MG_D190212_S2	2	600.795654296875	2	601.299633	1200.58471	0.85394	0.00051347	0.51617	0.00031037	1.3701	0.00082384	601.299729912882	47.418	0.25753	47.297	47.13	47.388	-0.12175					8	4	3	0	0	0	0.26351	1	18083	18083		22.736	8.8302	1	8102600	+		26417	12694	16849	16937	25374	25374					-0.007556486241583116
QQQQQQLPR	9	Unmodified	_QQQQQQLPR_					0	0	0		ENSG00000153162|ENST00000283147|BMP6	ENSG00000153162|ENST00000283147|BMP6	ENSG00000153162|ENST00000283147|BMP6	MSMS	HCT116MG_D190212_S4	4	385.20654296875	3	385.207266	1152.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.769	1	21.551	21.051	22.051	-0.21832								0	0	0	0.76906	1	7535	7535		4.1895	1.4543	1				26418	4177	16850	16938	25375	25375					0.029772629636909187
QQQQQQPPP	9	Unmodified	_QQQQQQPPP_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1;ENSG00000163635|ENST00000674280|ATXN7;ENSG00000126746|ENST00000683879|ZNF384;nc|ENSG00000106536|P78424-2|POU6F2;nc|ENSG00000106536|P78424|POU6F2;ENSG00000106536|ENST00000518318|POU6F2;ENSG00000143603|ENST00000271915|KCNN3;AAK1|p.R760Gfs*14|1|0.28|ENSG00000115977|chr2:69496072-69496072|T/-|frameshift_variant;nc|ENSG00000115977|Q2M2I8-2|AAK1;ENST00000517348.1_1_7:39125465-39413102:+|nuORF;ENST00000549455.1_1_12:111963110-112036838:-|nuORF;nc|ENSG00000163635|O15265-2|ATXN7;ENSG00000115977|ENST00000409085|AAK1;ENSG00000196782|ENST00000509479|MAML3;nc|ENSG00000126746|Q8TF68|ZNF384;nc|ENSG00000126746|Q8TF68-3|ZNF384;nc|ENSG00000126746|Q8TF68-2|ZNF384;ENST00000477596.1_1_11:64534366-64535112:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF;KCNN3|p.P112Lfs*64|1|0.2|ENSG00000143603|chr1:154869630-154869630|G/-|frameshift_variant;ENST00000413725.5_1_11:64533292-64535069:-|nuORF;ENST00000561125.2_1_15:100246921-100252973:+|nuORF;KCNN3|p.E218Gfs*21|1|0.08|ENSG00000143603|chr1:154869314-154869315|-/G|frameshift_variant;KCNN3|p.P217Rfs*67|1|0.27|ENSG00000143603|chr1:154869315-154869315|G/-|frameshift_variant;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;POU6F2|p.Q374Sfs*22|1|0.52|ENSG00000106536|chr7:39433165-39433165|C/-|frameshift_variant;nc|ENSG00000068305|Q02078-8|MEF2A;nc|ENSG00000068305|Q02078-7|MEF2A;ATXN2|p.T582Yfs*32|1|0.16|ENSG00000204842|chr12:111516266-111516267|-/T|frameshift_variant;nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7;nc|ENSG00000138081|Q86XK2-4|FBXO11;FBXO11|p.D318Kfs*3|1|0.37|ENSG00000138081|chr2:47833050-47833053|TGTC/-|frameshift_variant;FBXO11|p.F332Lfs*13|1|0.41|ENSG00000138081|chr2:47833009-47833009|A/-|frameshift_variant;HTT|p.N699Mfs*9|2|0.17|ENSG00000197386|chr4:3131390-3131390|A/-|frameshift_variant;HTT|p.P1176Lfs*3|1|0.18|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;HTT|p.H2238Ffs*6|1|0.28|ENSG00000197386|chr4:3212643-3212644|CA/-|frameshift_variant;HTT|p.P2413Hfs*44|1|0.6|ENSG00000197386|chr4:3217944-3217944|C/-|frameshift_variant;ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-2|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;ENST00000475066.1_1_7:154759501-154775093:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;ENSG00000157212|ENST00000404141|PAXIP1;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;DLX6|p.L238Sfs*55|2|0.14|ENSG00000006377|chr7:97009873-97009873|C/-|frameshift_variant;ENSG00000006377|ENST00000518156|DLX6;nc|ENSG00000168066|Q15637-5|SF1;nc|ENSG00000168066|Q15637-4|SF1;ENST00000448404.5_1_11:64532928-64535069:-|nuORF;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;ENSG00000197386|ENST00000355072|HTT;SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000274211|O14512|SOCS7;ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000204842|Q99700-4|ATXN2;ENST00000475066.1_1_7:154759501-154775093:-|nuORF;ENSG00000138081|ENST00000403359|FBXO11;REV__ENSG00000198218|ENST00000395443|QRICH1;DLX6|p.L238Sfs*55|2|0.14|ENSG00000006377|chr7:97009873-97009873|C/-|frameshift_variant;nc|ENSG00000168066|Q15637-5|SF1;REV__CELF3|p.Q389Rfs*38|1|0.16|ENSG00000159409|chr1:151705927-151705927|G/-|frameshift_variant;REV__ENSG00000091656|ENST00000651372|ZFHX4;ENSG00000197386|ENST00000355072|HTT;REV__TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant;REV__ENSG00000146830|ENST00000678049|GIGYF1;SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S4	4	360.180419921875	3	360.180717	1077.52032	-0.66162	-0.0002383	0.18776	6.7628E-05	-0.47386	-0.00017067	360.18083285238504	15.875	0.5071	15.712	15.563	16.07	-0.16364					14	9	2	0	0	0	0.7005	1	5177	5177		2.9952	0	1	499400			26419	3974;1417;6675;3529;14117;9539;11003;9611;689;6141;12325;12494;4322;10145;4282	16851	16939	25376	25376					-0.015338037102765156
QQRRKEERRKR	11	Unmodified	_QQRRKEERRKR_					0	0	0			REV__ENSG00000146830|ENST00000678049|GIGYF1	REV__ENSG00000146830|ENST00000678049|GIGYF1	MSMS	HCT116MG_D190212_S3	3	785.5449829101562	2	785.46147	1568.90839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.384	1	33.094	32.594	33.594	-0.29013								0	0	0	0.9619	1	12250	12250		0	0	1		+		26420	12494	16852	16940	25377	25377					0.14668921934412538
QQRRPYRRRR	10	Unmodified	_QQRRPYRRRR_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S1	1	491.2911071777344	3	491.290769	1470.85048	0.441	0.00021666	-0.16209	-7.9633E-05	0.27891	0.00013702	491.29069194063766	53.097	0.8742	53.097	52.742	53.616	0					27	16	2	0	0	0	0.89272	1	20295	20295		0.13989	0.017027	1	14156000			26421	1164	16853	16941	25378	25378					0.13388704799672269
QQRRPYRRRR	10	Unmodified	_QQRRPYRRRR_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S2	2	736.4330444335938	2	736.432516	1470.85048	0.93375	0.00068765	-0.19876	-0.00014638	0.73499	0.00054127	736.4322200426293	54.039	1.6962	53.85	52.913	54.61	-0.1894					46	32	2	0	0	0	0.88823	2	20649	20649;20906		1.4819	1.1313	1	19647000			26422	1164	16853	16941	25379;25380	25379					0.13388704799672269
QQRRPYRRRR	10	Unmodified	_QQRRPYRRRR_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MSMS	HCT116MG_D190212_S4	4	736.4346313476562	2	736.432516	1470.85048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.324	1	54.001	53.501	54.501	-0.32349								0	0	0	0.96453	1	20309	20309		1.4819	0.15237	1				26423	1164	16853	16941	25381	25381					0.13388704799672269
QQRRRRRRQRL	11	Unmodified	_QQRRRRRRQRL_					0	0	0			REV__ENST00000055682.10_1_X:74144856-74145033:-|nuORF	REV__ENST00000055682.10_1_X:74144856-74145033:-|nuORF	MSMS	HCT116MG_D190212_S4	4	804.9944458007812	2	804.996346	1607.97814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.82	1	56.519	56.019	57.019	-0.3004								0	0	0	0.96149	1	21310	21310		0.30703	0.30703	1		+		26424	14487	16854	16942	25382	25382					0.19846845393726653
QQSRLYHFWWH	11	Unmodified	_QQSRLYHFWWH_					0	0	0			REV__FMOD|p.A267Rfs*14|2|0.19|ENSG00000122176|chr1:203347472-203347472|C/-|frameshift_variant	REV__FMOD|p.A267Rfs*14|2|0.19|ENSG00000122176|chr1:203347472-203347472|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	794.3807373046875	2	794.383834	1586.75312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.559	1	27.371	26.871	27.871	-0.18847								0	0	0	0.95343	1	9937	9937		4.5289	0.33936	1		+		26425	11730	16855	16943	25383	25383					-0.01679121919823956
QQTFPAALEP	10	Unmodified	_QQTFPAALEP_					0	0	0		ENST00000336095.10_1_20:3914180-3914489:-|nuORF	ENST00000336095.10_1_20:3914180-3914489:-|nuORF	ENST00000336095.10_1_20:3914180-3914489:-|nuORF	MSMS	HCT116MG_D190212_S3	3	550.8759765625	2	551.282389	1100.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.496	1	37.195	36.695	37.695	-0.30137								0	0	0	0.87318	1	13891	13891		19.362	4.1135	1				26426	7190	16856	16944	25384	25384					0.003971352350617963
QQTQRWFRRRR	11	Unmodified	_QQTQRWFRRRR_					0	0	0		ENST00000557925.1_1_19:8315741-8320784:+|nuORF;ENST00000558501.5_1_19:8275630-8321979:+|nuORF;ENSG00000090661|ENST00000251363|CERS4	ENST00000557925.1_1_19:8315741-8320784:+|nuORF	ENST00000557925.1_1_19:8315741-8320784:+|nuORF	MSMS	HCT116MG_D190212_S4	4	809.4505004882812	2	809.450905	1616.88726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.57	1	55.258	54.758	55.758	-0.312								0	0	0	0.96208	1	20811	20811		0	0	1				26427	8798	16857	16945	25385	25385					0.10348956625557548
QQTQSAKTLP	10	Unmodified	_QQTQSAKTLP_					0	0	0			REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	MULTI-MSMS	HCT116MG_D190212_S1	1	367.8679504394531	3	367.868139	1100.58259	-0.12532	-4.6099E-05	-0.22216	-8.1724E-05	-0.34747	-0.00012782	367.86802077434413	18.495	0.8339	18.495	17.933	18.766	0					30	15	3	0	0	0	0.59961	1	6263	6263		28.234	28.234	1	6854200	+		26428	13174	16858	16946	25386	25386					0.03631922638055585
QQTQSAKTLP	10	Unmodified	_QQTQSAKTLP_					0	0	0			REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	MULTI-SECPEP	HCT116MG_D190212_S1	1	367.2480773925781	3	367.868139	1100.58259	-0.12532	-4.6099E-05	-0.22216	-8.1724E-05	-0.34747	-0.00012782	367.86802077434413	18.495	0.8339	18.495	17.933	18.766	0					30	15	3	0	0	0	0.26755	1	6332	6332		37.075	13.285	1	6854200	+		26429	13174	16858	16946	25387	25387					0.03631922638055585
QQVDYSQWGQW	11	Unmodified	_QQVDYSQWGQW_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MSMS	HCT116MG_D190212_S4	4	712.8193969726562	2	712.815116	1423.61568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.793	1	19.599	19.099	20.099	-0.19367								0	0	0	0.94012	1	6736	6736		11.495	0.6952	1				26430	4130	16859	16947	25388	25388					-0.07918495309900209
QQVYKLDL	8	Unmodified	_QQVYKLDL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000487258.5_1_7:91722364-91739470:+|nuORF;ENST00000487692.1_1_7:91726485-91729288:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	HCT116MG_D190212_S3	3	505.1461181640625	2	503.782025	1005.5495	0.3269	0.00016469	0.06787	3.4191E-05	0.39477	0.00019888	503.78197764388653	51.002	0.67931	50.688	50.386	51.065	-0.31381					28	12	4	0	0	0	0.83066	1	19165	19165		7.9102	1.187	1	117580000			26431	2979	16860	16948	25389	25389					0.04694340586001999
QQYKRLEANIP	11	Unmodified	_QQYKRLEANIP_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MSMS	HCT116MG_D190212_S4	4	680.3698120117188	2	680.372601	1358.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.634	1	36.249	35.749	36.749	-0.38486								0	0	0	0.95636	1	13414	13414		2.9952	0.90923	1		+		26432	11027	16861	16949	25390	25390					0.06563233891915843
QQYVEKPQA	9	Unmodified	_QQYVEKPQA_					0	0	0			REV__nc|ENSG00000197451|Q99729-3|HNRNPAB	REV__nc|ENSG00000197451|Q99729-3|HNRNPAB	MSMS	HCT116MG_D190212_S2	2	545.781494140625	2	545.780013	1089.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.786	1	20.406	19.906	20.906	-0.37949								0	0	0	0.49326	1	7281	7281		29.082	5.061	1		+		26433	14073	16862	16950	25391	25391					0.0042825109228488145
QRALQKLPL	9	Unmodified	_QRALQKLPL_					0	0	0		ENST00000550963.1_1_12:72004384-72005014:-|nuORF;ENST00000552994.5_1_12:72004210-72005014:-|nuORF;ENSG00000133858|ENST00000378743|ZFC3H1	ENST00000550963.1_1_12:72004384-72005014:-|nuORF	ENST00000550963.1_1_12:72004384-72005014:-|nuORF	MSMS	HCT116MG_D190212_S1	1	356.2276916503906	3	356.229231	1065.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.703	1	42.703	42.203	43.203	0								0	0	0	0.76948	1	16114	16114		2.7352	1.5419	1				26434	3253	16863	16951	25392	25392					0.13565703876543012
QRALQKLPL	9	Unmodified	_QRALQKLPL_					0	0	0		ENST00000550963.1_1_12:72004384-72005014:-|nuORF;ENST00000552994.5_1_12:72004210-72005014:-|nuORF;ENSG00000133858|ENST00000378743|ZFC3H1	ENST00000550963.1_1_12:72004384-72005014:-|nuORF	ENST00000550963.1_1_12:72004384-72005014:-|nuORF	MSMS	HCT116MG_D190212_S4	4	356.2279052734375	3	356.229231	1065.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.434	1	49.072	48.572	49.572	-0.36213								0	0	0	0.76875	1	18336	18336		5.2969	2.3016	1				26435	3253	16863	16951	25393	25393					0.13565703876543012
QRDGDFLVRD	10	Unmodified	_QRDGDFLVRD_					0	0	0		nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	nc|ENSG00000137936|O75815-3|BCAR3	nc|ENSG00000137936|O75815-3|BCAR3	MULTI-MSMS	HCT116MG_D190212_S3	3	610.8052368164062	2	610.804551	1219.59455	0.42005	0.00025657	-0.20823	-0.00012719	0.21182	0.00012938	610.8044584102985	22.406	0.72916	22.397	21.928	22.657	-0.0091438					26	13	3	0	0	0	0.7974	1	7824	7824		12.241	2.8575	1	4103100			26436	3515	16864	16952	25394	25394					-0.006464606187591926
QREREFRRHRF	11	Unmodified	_QREREFRRHRF_					0	0	0			REV__sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	REV__sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	MULTI-SECPEP	HCT116MG_D190212_S2	2	539.2926025390625	3	539.625818	1615.85562	0.60079	0.0003242	1.6596	0.00089559	2.2604	0.0012198	539.6269287644404	36.484	0.20724	36.356	36.278	36.486	-0.12799					5	3	2	0	0	0	0.36631	1	13673	13673		0.094841	0.011491	1	12031000	+		26437	17547	16865	16953	25395	25395					0.07232963871638276
QRESEHYQ	8	Unmodified	_QRESEHYQ_					0	0	0		ENST00000517550.1_1_7:27163893-27164022:+|nuORF;ENST00000521159.5_1_7:27162261-27164022:+|nuORF	ENST00000517550.1_1_7:27163893-27164022:+|nuORF	ENST00000517550.1_1_7:27163893-27164022:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	538.74169921875	2	538.741419	1075.46829	0.42234	0.00022753	0.19665	0.00010595	0.61899	0.00033348	538.7414231383683	19.835	0.26151	19.835	19.704	19.966	0					5	4	2	0	0	0	0.66231	1	6933	6933		26.884	5.137	1	3289200			26438	8541	16866	16954	25396	25396					-0.06642967124048482
QRFLRKFF	8	Unmodified	_QRFLRKFF_					0	0	0		ENST00000377705.5_1_1:6585202-6585712:-|nuORF	ENST00000377705.5_1_1:6585202-6585712:-|nuORF	ENST00000377705.5_1_1:6585202-6585712:-|nuORF	MSMS	HCT116MG_D190212_S2	2	571.4271850585938	2	571.335093	1140.65563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.252	1	63.129	62.629	63.629	-0.12264								0	0	0	0.8837	1	24523	24523		0.69038	0	1				26439	7530	16867	16955	25397	25397					0.09093140941990896
QRGKGLSHG	9	Unmodified	_QRGKGLSHG_					0	0	0		ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	MSMS	HCT116MG_D190212_S1	1	470.22174072265625	2	470.259582	938.504612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.826	1	37.826	37.326	38.326	0								0	0	0	0.76739	1	14144	14144		10.074	1.3285	1				26440	3382	16868	16956	25398	25398					0.032899545633426897
QRGNGGTG	8	Unmodified	_QRGNGGTG_					0	0	0			REV__ENST00000487755.1_1_1:155939986-155940142:-|nuORF	REV__ENST00000487755.1_1_1:155939986-155940142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	746.3549194335938	1	746.353991	745.346714	0.74476	0.00055586	0.56167	0.00041921	1.3064	0.00097506	746.3542297719887	32.043	1.4538	31.668	31.018	32.472	-0.37529					59	27	3	0	0	0	0.8672	1	11469	11469		2.3027	0	1	125280000	+		26441	16006	16869	16957	25399	25399					-0.036145446958926186
QRGRKPGG	8	Unmodified	_QRGRKPGG_					0	0	0		MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant;MLLT10|p.L1011Cfs*11|1|0.05|ENSG00000078403|chr10:21740105-21740105|C/-|frameshift_variant;nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10;MLLT10|p.L731Ffs*8|1|0.25|ENSG00000078403|chr10:21731023-21731024|-/T|frameshift_variant;ENST00000468309.1_1_10:21957921-21959695:+|nuORF	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MLLT10|p.Q1012Rfs*10|1|0.05|ENSG00000078403|chr10:21740107-21740107|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	428.24884033203125	2	428.249018	854.483482	0.1489	6.3766E-05	-0.02041	-8.7404E-06	0.12849	5.5025E-05	428.2489378348724	48.284	0.74656	47.917	47.419	48.166	-0.36727					22	14	3	0	0	0	0.8672	1	17839	17839		2.3027	0	1	10397000			26442	1366	16870	16958	25400	25400					0.05041989254470991
QRILPMIT	8	Unmodified	_QRILPMIT_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-5|QKI	REV__nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-SECPEP	HCT116MG_D190212_S2	2	485.7877502441406	2	486.288963	970.563372	0.0041162	2.0017E-06	0.40107	0.00019504	0.40519	0.00019704	486.289280826177	37.52	0.30502	37.417	37.284	37.589	-0.10318					7	5	2	0	0	0	0.28869	1	14067	14067		18.135	4.6271	1	95671000	+		26443	11462	16871	16959	25401	25401					0.07691294813446348
QRKFRKRRRLF	11	Unmodified	_QRKFRKRRRLF_					0	0	0			REV__ENSG00000186564|ENST00000334793|FOXD2	REV__ENSG00000186564|ENST00000334793|FOXD2	MSMS	HCT116MG_D190212_S1	1	796.0000610351562	2	796.000034	1589.98552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.939	1	44.939	44.439	45.439	0								0	0	0	0.96208	1	17014	17014		0	0	1		+		26444	13889	16872	16960	25402	25402					0.21412184941436863
QRKKWFWK	8	Unmodified	_QRKKWFWK_					0	0	0		ENST00000373669.6_1_X:71401532-71406332:+|nuORF	ENST00000373669.6_1_X:71401532-71406332:+|nuORF	ENST00000373669.6_1_X:71401532-71406332:+|nuORF	MSMS	HCT116MG_D190212_S1	1	402.9024353027344	3	402.901337	1205.68218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.709	1	10.709	10.209	11.209	0								0	0	0	0.8837	1	3306	3306		0.40072	0	1				26445	7481	16873	16961	25403	25403					0.08756829833305346
QRKPRKKTK	9	Unmodified	_QRKPRKKTK_					0	0	0		INO80D|p.V883Gfs*2|1|0.31|ENSG00000114933|chr2:206004804-206004804|A/-|frameshift_variant;ENSG00000114933|ENST00000403263|INO80D	INO80D|p.V883Gfs*2|1|0.31|ENSG00000114933|chr2:206004804-206004804|A/-|frameshift_variant	INO80D|p.V883Gfs*2|1|0.31|ENSG00000114933|chr2:206004804-206004804|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	585.384765625	2	585.383106	1168.75166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.333	1	61.333	60.833	61.833	0								0	0	0	0.77012	1	23663	23663		0.45834	0	1				26446	2437	16874	16962	25404	25404					0.1740328878206583
QRKRRRRERRR	11	Unmodified	_QRKRRRRERRR_					0	0	0		ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MSMS	HCT116MG_D190212_S3	3	827.0116577148438	2	827.01507	1652.01559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.671	1	53.371	52.871	53.871	-0.29946								0	0	0	0.96208	1	20319	20319		0	0	1				26447	7945	16875	16963	25405	25405					0.21565936659294493
QRKTLVLIG	9	Unmodified	_QRKTLVLIG_					0	0	0		ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	MULTI-MSMS	HCT116MG_D190212_S1	1	514.32177734375	2	514.334759	1026.65496	0.29165	0.00015	0.28508	0.00014662	0.57672	0.00029663	514.3349444902358	58.387	0.50776	58.387	58.261	58.769	0					13	9	2	0	0	0	0.74917	1	22473	22473		1.8442	0	1	40467000			26448	2044	16876	16964	25406	25406					0.14270301502278926
QRLKVPDVP	9	Unmodified	_QRLKVPDVP_					0	0	0			REV__ENST00000423554.5_1_5:154202945-154230090:-|nuORF	REV__ENST00000423554.5_1_5:154202945-154230090:-|nuORF	MSMS	HCT116MG_D190212_S4	4	526.3145751953125	2	526.316566	1050.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.306	1	44.934	44.434	45.434	-0.37266								0	0	0	0.76694	1	16708	16708		11.64	4.3511	1		+		26449	13288	16877	16965	25407	25407					0.09529424605557324
QRLVSPWKLC	10	Unmodified	_QRLVSPWKLC_					0	0	0		ENST00000515644.1_1_4:114238699-114238756:+|nuORF	ENST00000515644.1_1_4:114238699-114238756:+|nuORF	ENST00000515644.1_1_4:114238699-114238756:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	615.2948608398438	2	615.3448	1228.67505	0.56652	0.0003486	-0.51682	-0.00031802	0.049701	3.0583E-05	615.3441923502537	41.592	0.15335	41.523	41.447	41.601	-0.068199					4	2	2	0	0	0	0.30738	1	15690	15690		13.906	13.906	1	9431800			26450	8536	16878	16966	25408	25408					0.06985729170583
QRLWKRKKKKK	11	Unmodified	_QRLWKRKKKKK_					0	0	0			REV__TTC24|p.Q308Afs*50|1|0.36|ENSG00000187862|chr1:156583048-156583049|-/G|frameshift_variant	REV__TTC24|p.Q308Afs*50|1|0.36|ENSG00000187862|chr1:156583048-156583049|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	763.5519409179688	2	764.009536	1526.00452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.46	1	15.133	14.633	15.633	-0.32684								0	0	0	0.96208	1	5138	5138		0	0	1		+		26451	13939	16879	16967	25409	25409					0.26255721512461605
QRLWRFFEKQK	11	Unmodified	_QRLWRFFEKQK_					0	0	0		ENST00000554737.2_1_14:73524717-73524879:-|nuORF	ENST00000554737.2_1_14:73524717-73524879:-|nuORF	ENST00000554737.2_1_14:73524717-73524879:-|nuORF	MSMS	HCT116MG_D190212_S3	3	783.4365234375	2	783.438609	1564.86267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.324	1	21.343	20.843	21.843	0.018446								0	0	0	0.9598	1	7426	7426		1.1933	0.12188	1				26452	8781	16880	16968	25410	25410					0.10282883699483136
QRLWRFFEKQK	11	Unmodified	_QRLWRFFEKQK_					0	0	0		ENST00000554737.2_1_14:73524717-73524879:-|nuORF	ENST00000554737.2_1_14:73524717-73524879:-|nuORF	ENST00000554737.2_1_14:73524717-73524879:-|nuORF	MSMS	HCT116MG_D190212_S4	4	783.4359130859375	2	783.438609	1564.86267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.76	1	20.55	20.05	21.05	-0.20959								0	0	0	0.9598	1	7126	7126		1.1933	0.12188	1				26453	8781	16880	16968	25411	25411					0.10282883699483136
QRQRQRLREL	10	Unmodified	_QRQRQRLREL_					0	0	0		KMT2D|p.P2716Lfs*17|1|0.24|ENSG00000167548|chr12:49039519-49039519|C/-|frameshift_variant;KMT2D|p.Y2907Tfs*3|1|0.26|ENSG00000167548|chr12:49038637-49038637|A/-|frameshift_variant;KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;KMT2D|p.P3102Lfs*17|1|0.26|ENSG00000167548|chr12:49038051-49038051|G/-|frameshift_variant;KMT2D|p.A3552Sfs*4|1|0.51|ENSG00000167548|chr12:49034153-49034154|-/T|frameshift_variant;KMT2D|p.Q4156Nfs*5|1|0.15|ENSG00000167548|chr12:49032239-49032239|G/-|frameshift_variant;KMT2D|p.S4327Afs*57|1|0.44|ENSG00000167548|chr12:49031727-49031727|G/-|frameshift_variant;KMT2D|p.T4629Pfs*11|1|0.27|ENSG00000167548|chr12:49030395-49030395|G/-|frameshift_variant;KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant;KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;KMT2D|p.G5182Afs*61|1|0.57|ENSG00000167548|chr12:49026421-49026421|C/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	KMT2D|p.P2716Lfs*17|1|0.24|ENSG00000167548|chr12:49039519-49039519|C/-|frameshift_variant	KMT2D|p.P2716Lfs*17|1|0.24|ENSG00000167548|chr12:49039519-49039519|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	461.6072998046875	3	461.607764	1381.80146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.886	1	61.749	61.249	62.249	-0.13698								0	0	0	0.97045	1	23978	23978		0.15932	0	1				26454	4931	16881	16969	25412	25412					0.12583371720097603
QRRGAAPL	8	Unmodified	_QRRGAAPL_					0	0	0		CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant;ENSG00000103326|ENST00000219611|CAPN15	CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant	CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	434.7593078613281	2	434.759218	867.503883	0.24389	0.00010603	0.10431	4.535E-05	0.3482	0.00015138	434.7591734106412	48.274	1.7736	47.958	47.411	49.184	-0.31596					86	33	5	0	0	0	0.86564	1	18540	18540		2.5775	0	1	279490000			26455	322	16882	16970	25413	25413					0.06483159914284897
QRRKKRRLKKR	11	Unmodified	_QRRKKRRLKKR_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3;ENST00000573539.5_1_17:3442880-3458098:-|nuORF	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MSMS	HCT116MG_D190212_S4	4	518.3534545898438	3	518.353481	1552.03861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.074	1	48.709	48.209	49.209	-0.365								0	0	0	0.96208	1	18190	18190		0	0	1				26456	4952	16883	16971	25414	25414					0.2846756272408584
QRRKKRRLKKR	11	Unmodified	_QRRKKRRLKKR_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3;ENST00000573539.5_1_17:3442880-3458098:-|nuORF	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MSMS	HCT116MG_D190212_S4	4	518.3525390625	3	518.353481	1552.03861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.681	1	49.319	48.819	49.819	-0.36213								0	0	0	0.96208	1	18436	18436		0	0	1				26457	4952	16883	16971	25415	25415					0.2846756272408584
QRRPRRPRGPR	11	Unmodified	_QRRPRRPRGPR_					0	0	0			REV__ENST00000296350.9_1_3:196729451-196730141:-|nuORF	REV__ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	716.93798828125	2	716.435058	1430.85556	0.5957	0.00042678	0.33229	0.00023806	0.92799	0.00066485	716.4351502773998	54.432	2.403	54.136	52.467	54.87	-0.29587					100	45	4	0	0	0	0.74191	1	20253	20253		0	0	1	16620000	+		26458	14760	16884	16972	25416	25416					0.15737008662290464
QRRRFRFHHLF	11	Unmodified	_QRRRFRFHHLF_					0	0	0		ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	MSMS	HCT116MG_D190212_S3	3	800.4508056640625	2	800.447634	1598.88072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.026	1	44.716	44.216	45.216	-0.30927								0	0	0	0.95954	1	16846	16846		1.3295	0.9789	1				26459	9046	16885	16973	25417	25417					0.10523063464870575
QRRRQHRRQHQ	11	Unmodified	_QRRRQHRRQHQ_					0	0	0		ENST00000254958.9_1_20:10654138-10654354:-|nuORF	ENST00000254958.9_1_20:10654138-10654354:-|nuORF	ENST00000254958.9_1_20:10654138-10654354:-|nuORF	MSMS	HCT116MG_D190212_S1	1	793.4413452148438	2	793.441403	1584.86825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.977	1	45.977	45.477	46.477	0								0	0	0	0.96149	1	17432	17432		0.30703	0	1				26460	6815	16886	16974	25418	25418					0.09921420054524788
QRRRRKLRRPT	11	Unmodified	_QRRRRKLRRPT_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	508.3258056640625	3	508.325702	1521.95528	0.38468	0.00019554	-0.15099	-7.6752E-05	0.23369	0.00011879	508.3255733298427	56.352	0.20656	56.352	56.222	56.428	0					14	3	5	0	0	0	0.74191	1	21662	21662		0.36667	0.28332	1	289660000	+		26461	14888	16887	16975	25419	25419					0.21517826276249252
QRRRRKLRRPT	11	Unmodified	_QRRRRKLRRPT_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	508.3258056640625	3	508.325702	1521.95528	0.45733	0.00023247	-0.11016	-5.5996E-05	0.34717	0.00017648	508.3255154917874	56.84	0.73341	56.661	56.421	57.155	-0.17904					47	13	5	0	0	0	0.74191	1	21919	21919		0.36667	0.28332	1	182570000	+		26462	14888	16887	16975	25420	25420					0.21517826276249252
QRRRRKLRRPT	11	Unmodified	_QRRRRKLRRPT_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	508.325702	1521.95528	0.38468	0.00019554	-0.15099	-7.6752E-05	0.23369	0.00011879	508.3255733298427	56.352	0.20656	56.352	56.222	56.428	0	-0.15459	-2.953E-05	NaN	0.36667	14	3	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289660000	+		26463	14888	16887	16975							0.21517826276249252
QRRRRKLRRPT	11	Unmodified	_QRRRRKLRRPT_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	508.325702	1521.95528	0.45733	0.00023247	-0.11016	-5.5996E-05	0.34717	0.00017648	508.3255154917874	56.84	0.73341	56.661	56.421	57.155	-0.17904	0.15459	3.2737E-05	NaN	0.36667	47	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182570000	+		26464	14888	16887	16975							0.21517826276249252
QRRRRRQRQP	10	Unmodified	_QRRRRRQRQP_					0	0	0			REV__ENST00000338745.10_3_3:18466531-18466693:-|nuORF	REV__ENST00000338745.10_3_3:18466531-18466693:-|nuORF	MSMS	HCT116MG_D190212_S1	1	718.9293823242188	2	718.93014	1435.84573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.822	1	46.822	46.322	47.322	0								0	0	0	0.96453	1	17775	17775		1.4819	0.15237	1		+		26465	14959	16888	16976	25421	25421					0.14523820656927455
QRRRRRRKIEI	11	Unmodified	_QRRRRRRKIEI_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	523.0013427734375	3	523.001107	1565.98149	0.36037	0.00018848	0.0020822	1.089E-06	0.36246	0.00018956	523.001024373485	56.697	0.87881	56.697	56.377	57.256	0					64	16	5	0	0	0	0.74191	1	21726	21726		1.1098	1.0264	1	224660000			26466	430	16889	16977	25422	25422					0.22114095447727777
QRRRRRRKIEI	11	Unmodified	_QRRRRRRKIEI_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	523.0014038085938	3	523.001107	1565.98149	0.45781	0.00023944	0.018818	9.8419E-06	0.47663	0.00024928	523.0009972262069	56.997	0.72947	56.818	56.582	57.311	-0.17904					48	13	5	0	0	0	0.74191	2	21968	21968;22057		1.1098	1.0365	1	146920000			26467	430	16889	16977	25423;25424	25423					0.22114095447727777
QRRRRRRKIEI	11	Unmodified	_QRRRRRRKIEI_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		3	523.001107	1565.98149	0.50755	0.00026545	1.2318	0.00064423	1.7393	0.00090968	523.0014106206884	57.062	0.26043	56.782	56.625	56.885	-0.27913	0.016782	0.0019092	NaN	1.1098	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	684760			26468	430	16889	16977							0.22114095447727777
QRRWLRWKPRW	11	Unmodified	_QRRWLRWKPRW_					0	0	0			REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	REV__TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	834.4783935546875	2	834.478934	1666.94332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.054	1	46.932	46.432	47.432	-0.12175								0	0	0	0.96208	1	17940	17940		0	0	1		+		26469	17613	16890	16978	25425	25425					0.13652209533029236
QRSETINTSSF	11	Unmodified	_QRSETINTSSF_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	HCT116MG_D190212_S1	1	634.6011962890625	2	635.307123	1268.59969	0.68028	0.00043219	-0.033423	-2.1234E-05	0.64686	0.00041096	635.307083281827	32.613	0.36449	32.613	32.378	32.742	0					15	6	4	0	0	0	0.31998	1	12018	12018		40.239	8.2017	1	28104000			26470	6258	16891	16979	25426	25426					-0.023862015468012032
QRSIMLDIDE	10	Unmodified	_QRSIMLDIDE_					0	0	0			REV__nc|ENSG00000081189|Q06413-3|MEF2C	REV__nc|ENSG00000081189|Q06413-3|MEF2C	MULTI-MSMS	HCT116MG_D190212_S2	2	610.3031616210938	2	610.302995	1218.59144	0.51603	0.00031493	-0.75978	-0.0004637	-0.24375	-0.00014876	610.3024575045533	51.014	0.41345	50.836	50.706	51.12	-0.17868					10	7	2	0	0	0	0.67142	1	19588	19588		26.268	0	1	21833000	+		26471	10876	16892	16980	25427	25427					-0.009114717877764633
QRSSLQKK	8	Unmodified	_QRSSLQKK_					0	0	0		nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-3|ZNG1A	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	nc|ENSG00000215126|Q5RIA9-3|ZNG1E	MULTI-MSMS	HCT116MG_D190212_S2	2	487.79083251953125	2	487.790715	973.566878	0.24209	0.00011809	0.28316	0.00013812	0.52525	0.00025621	487.79076182041064	45.494	1.7551	45.402	44.683	46.439	-0.092472					63	33	2	0	0	0	0.84095	1	17341	17341		6.7232	0	1	50057000			26472	9551	16893	16981	25428	25428					0.07903680911670108
QRTALPAR	8	Unmodified	_QRTALPAR_					0	0	0			REV__ENSG00000125965|ENST00000374369|GDF5	REV__ENSG00000125965|ENST00000374369|GDF5	MULTI-MSMS	HCT116MG_D190212_S4	4	456.7721252441406	2	456.772326	911.530098	0.052707	2.4075E-05	0.010915	4.9858E-06	0.063622	2.9061E-05	456.77223386445604	49.348	1.7456	48.986	48.46	50.205	-0.36234					96	37	5	0	0	0	0.85571	1	18205	18205		4.3292	1.7518	1	346040000	+		26473	11825	16894	16982	25429	25429					0.07079429085752054
QRTQAPAV	8	Unmodified	_QRTQAPAV_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;RPL18-RPS2|1|fusion;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000443417.1_1_9:102879039-102879699:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MSMS	HCT116MG_D190212_S1	1	435.7431335449219	2	435.743234	869.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.783	1	61.783	61.283	62.283	0								0	0	0	0.8837	1	23845	23845		0.79363	0	1				26474	3697	16895	16983	25430	25430					0.03195747440463492
QRVDYIMQL	9	Unmodified	_QRVDYIMQL_					0	0	0		ENST00000537267.5_1_12:6966716-6975238:+|nuORF;USP5|p.P723Lfs*6|1|0.17|ENSG00000111667|chr12:6864114-6864114|C/-|frameshift_variant;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	ENST00000537267.5_1_12:6966716-6975238:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	583.3056640625	2	583.305341	1164.59613	0.51586	0.00030091	0.10627	6.199E-05	0.62214	0.0003629	583.3052249837164	50.815	0.20623	50.642	50.506	50.712	-0.17273					9	3	3	0	0	0	0.049545	1	19505	19505		74.929	18.752	1	23325000			26475	2305	16896	16984	25431	25431					0.020414571456285557
QRVVKRFSM	9	Unmodified	_QRVVKRFSM_					0	0	0			REV__ENST00000453768.6_1_11:67208484-67210099:-|nuORF	REV__ENST00000453768.6_1_11:67208484-67210099:-|nuORF	MSMS	HCT116MG_D190212_S4	4	384.2230529785156	3	384.22197	1149.64408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.327	1	33.941	33.441	34.441	-0.38558								0	0	0	0.76886	1	12530	12530		4.897	1.8247	1		+		26476	13399	16897	16985	25432	25432					0.07524575856359661
QRVVKRFSM	9	Unmodified	_QRVVKRFSM_					0	0	0			REV__ENST00000453768.6_1_11:67208484-67210099:-|nuORF	REV__ENST00000453768.6_1_11:67208484-67210099:-|nuORF	MSMS	HCT116MG_D190212_S4	4	384.2226867675781	3	384.22197	1149.64408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.375	1	35.989	35.489	36.489	-0.38558								0	0	0	0.76954	1	13309	13309		2.4985	0.59211	1		+		26477	13399	16897	16985	25433	25433					0.07524575856359661
QRWHLTML	8	Unmodified	_QRWHLTML_					0	0	0		ENST00000593395.1_1_19:52430583-52433026:+|nuORF	ENST00000593395.1_1_19:52430583-52433026:+|nuORF	ENST00000593395.1_1_19:52430583-52433026:+|nuORF	MSMS	HCT116MG_D190212_S3	3	362.1959533691406	3	362.195533	1083.56477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.322	1	57.042	56.542	57.542	-0.27913								0	0	0	0.8837	1	21781	21781		1.8442	0	1				26478	9048	16898	16986	25434	25434					0.02632928902198728
QRWRRYKYRFV	11	Unmodified	_QRWRRYKYRFV_					0	0	0		nc|ENSG00000155542|Q8NE22-2|SETD9;ENSG00000155542|ENST00000285947|SETD9	nc|ENSG00000155542|Q8NE22-2|SETD9	nc|ENSG00000155542|Q8NE22-2|SETD9	MSMS	HCT116MG_D190212_S2	2	829.467529296875	2	829.46295	1656.91135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.289	1	51.111	50.611	51.611	-0.17868								0	0	0	0.95954	1	19675	19675		1.3295	1.0605	1				26479	4254	16899	16987	25435	25435					0.1091679705923525
QRWYAWWWKVW	11	Unmodified	_QRWYAWWWKVW_					0	0	0		NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant	NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant	NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	847.9212036132812	2	847.922595	1693.83064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.286	1	35.286	34.786	35.786	0								0	0	0	0.96208	1	13121	13121		0	0	1				26480	9358	16900	16988	25436	25436					0.011475160163172404
QRYLEEKGTT	10	Unmodified	_QRYLEEKGTT_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MSMS	HCT116MG_D190212_S1	1	408.8804931640625	3	408.878815	1223.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.722	1	13.722	13.222	14.222	0								0	0	0	0.9696	1	4465	4465		0.12286	0.049601	1				26481	5757	16901	16989	25437	25437					0.011752903211800003
QSAIRESSDYF	11	Unmodified	_QSAIRESSDYF_					0	0	0			REV__SYNPO2|p.R670Q|1|0.24|ENSG00000172403|chr4:119030784-119030784|G/A|missense_variant	REV__SYNPO2|p.R670Q|1|0.24|ENSG00000172403|chr4:119030784-119030784|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	652.9867553710938	2	651.801674	1301.58879	0.59021	0.0003847	-0.35102	-0.0002288	0.23919	0.0001559	651.8013381555235	40.156	0.61234	39.776	39.517	40.129	-0.37936					44	20	3	0	0	0	0.74191	1	14762	14762		4.1895	0	1	13879000	+		26482	17609	16902	16990	25438	25438					-0.04993603921116119
QSCWAAACMC	10	Unmodified	_QSCWAAACMC_					0	0	0			REV__SPOCK3|p.V10M|1|0.35|ENSG00000196104|chr4:167234146-167234146|C/T|missense_variant	REV__SPOCK3|p.V10M|1|0.35|ENSG00000196104|chr4:167234146-167234146|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	537.186279296875	2	537.187208	1072.35986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.871	1	5.6095	5.1095	6.1095	-0.26151								0	0	0	0.96911	1	1796	1796		0.45834	0.45834	1		+		26483	17587	16903	16991	25439	25439					-0.17342257286350105
QSDEKWDYHIS	11	Unmodified	_QSDEKWDYHIS_					0	0	0		tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	704.3132934570312	2	704.312406	1406.61026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.284	1	41.981	41.481	42.481	-0.30352								0	0	0	0.82357	1	15747	15747		29.841	0	1				26484	18470	16904	16992	25440	25440					-0.07678218892374389
QSDEKWDYHIS	11	Unmodified	_QSDEKWDYHIS_					0	0	0		tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	tr|U7SUA8|U7SUA8_FUSNUEndonuclease/exonuclease/phosphatasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01165PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	704.3131713867188	2	704.312406	1406.61026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.328	1	41.952	41.452	42.452	-0.37565								0	0	0	0.82357	1	15553	15553		29.841	0	1				26485	18470	16904	16992	25441	25441					-0.07678218892374389
QSDIMQQFFD	10	Unmodified	_QSDIMQQFFD_					0	0	0			REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	MSMS	HCT116MG_D190212_S3	3	629.772705078125	2	629.774071	1257.53359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.057	1	15.14	14.64	15.64	0.083271								0	0	0	0.8981	1	4897	4897		16.149	1.3108	1		+		26486	10551	16905	16993	25442	25442					-0.08487733713218404
QSDKLCFNT	9	Unmodified	_QSDKLCFNT_					0	0	0		nc|ENSG00000103034|Q9ULP0-5|NDRG4	nc|ENSG00000103034|Q9ULP0-5|NDRG4	nc|ENSG00000103034|Q9ULP0-5|NDRG4	MULTI-MSMS	HCT116MG_D190212_S2	2	528.2449951171875	2	528.244949	1054.47534	0.37136	0.00019617	-0.20582	-0.00010873	0.16554	8.7444E-05	528.244838202315	25.737	0.20739	25.368	25.239	25.446	-0.36914					6	3	2	0	0	0	0.15273	1	9292	9292		47.749	7.799	1	14011000			26487	9408	16906	16994	25443	25443					-0.04971370567818667
QSDKLCFNT	9	Unmodified	_QSDKLCFNT_					0	0	0		nc|ENSG00000103034|Q9ULP0-5|NDRG4	nc|ENSG00000103034|Q9ULP0-5|NDRG4	nc|ENSG00000103034|Q9ULP0-5|NDRG4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	528.244949	1054.47534	0.19363	0.00010229	-0.10048	-5.3077E-05	0.093157	4.921E-05	528.2448033403175	25.327	0.2602	25.327	25.197	25.457	0	-0.043702	9.6867E-05	NaN	47.749	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6416700			26488	9408	16906	16994							-0.04971370567818667
QSDKLCFNT	9	Unmodified	_QSDKLCFNT_					0	0	0		nc|ENSG00000103034|Q9ULP0-5|NDRG4	nc|ENSG00000103034|Q9ULP0-5|NDRG4	nc|ENSG00000103034|Q9ULP0-5|NDRG4	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	528.244949	1054.47534	0.37136	0.00019617	-0.20582	-0.00010873	0.16554	8.7444E-05	528.244838202315	25.737	0.20739	25.368	25.239	25.446	-0.36914	-0.0022857	-1.443E-05	NaN	47.749	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14011000			26489	9408	16906	16994							-0.04971370567818667
QSDKLCFNT	9	Unmodified	_QSDKLCFNT_					0	0	0		nc|ENSG00000103034|Q9ULP0-5|NDRG4	nc|ENSG00000103034|Q9ULP0-5|NDRG4	nc|ENSG00000103034|Q9ULP0-5|NDRG4	MULTI-MATCH	HCT116MG_D190212_S3	3		2	528.244949	1054.47534	0.52661	0.00027818	-0.59838	-0.00031609	-0.071765	-3.7909E-05	528.2447774156562	25.522	0.20784	25.416	25.256	25.464	-0.10618	0.045988	-0.00042916	NaN	47.749	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2468300			26490	9408	16906	16994							-0.04971370567818667
QSDKVYEVY	9	Unmodified	_QSDKVYEVY_					0	0	0		ENST00000456901.1_1_7:145280818-145281352:+|nuORF;ENSG00000156162|ENST00000414645|DPY19L4	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	566.2786254882812	2	565.771854	1129.52915	0.45039	0.00025482	2.3428	0.0013255	2.7932	0.0015803	565.7724425532334	34.035	0.31252	33.741	33.559	33.871	-0.29419					9	5	2	0	0	0	0.0068427	1	12519	12519		121.53	64.063	1	14037000			26491	8028	16907	16995	25444	25444					-0.030428748644681036
QSDMGREAAY	10	Unmodified	_QSDMGREAAY_					0	0	0		ENSG00000130748|ENST00000253047|TMEM160	ENSG00000130748|ENST00000253047|TMEM160	ENSG00000130748|ENST00000253047|TMEM160	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2432861328125	2	564.242938	1126.47132	0.53086	0.00029953	-0.42812	-0.00024157	0.10273	5.7967E-05	564.2428377315131	24.593	0.36516	24.213	23.979	24.344	-0.38003					12	6	3	0	0	0	0.016452	1	8823	8823		128.57	88.623	1	19518000			26492	3100	16908	16996	25445	25445					-0.08685460061542472
QSDMGREAAY	10	Unmodified	_QSDMGREAAY_					0	0	0		ENSG00000130748|ENST00000253047|TMEM160	ENSG00000130748|ENST00000253047|TMEM160	ENSG00000130748|ENST00000253047|TMEM160	MULTI-MSMS	HCT116MG_D190212_S3	3	564.242919921875	2	564.242938	1126.47132	0.27252	0.00015377	-0.079452	-4.483E-05	0.19307	0.00010894	564.2429614613034	24.168	0.36415	24.107	23.947	24.311	-0.061449					12	6	3	0	0	0	0.066546	1	8600	8600		80.676	47.89	1	7581300			26493	3100	16908	16996	25446	25446					-0.08685460061542472
QSDPAPLQH	9	Unmodified	_QSDPAPLQH_					0	0	0		ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT	ENST00000466765.1_1_3:53267112-53269174:-|nuORF	ENST00000466765.1_1_3:53267112-53269174:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	496.7440490722656	2	496.743431	991.472308	0.35999	0.00017882	0.23259	0.00011554	0.59259	0.00029436	496.74353586326754	21.672	0.36455	21.672	21.437	21.802	0					11	6	2	0	0	0	0.0040527	1	7618	7618		149.91	74.985	1	11263000			26494	4649	16909	16997	25447	25447					-0.023768776303313643
QSDPAPLQH	9	Unmodified	_QSDPAPLQH_					0	0	0		ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT	ENST00000466765.1_1_3:53267112-53269174:-|nuORF	ENST00000466765.1_1_3:53267112-53269174:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	496.74359130859375	2	496.743431	991.472308	0.30958	0.00015378	-0.047114	-2.3403E-05	0.26247	0.00013038	496.7433583276713	22.046	1.1431	21.661	20.753	21.896	-0.38503					33	21	2	0	0	0	0.0059958	1	7778	7778		128.93	72.755	1	28536000			26495	4649	16909	16997	25448	25448					-0.023768776303313643
QSDPKPSQY	9	Unmodified	_QSDPKPSQY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	HCT116MG_D190212_S1	1	525.2488403320312	2	525.248546	1048.48254	0.23677	0.00012436	0.15648	8.2189E-05	0.39324	0.00020655	525.2485071220541	19.521	0.26052	19.521	19.391	19.652	0					9	4	3	0	0	0	0.0034865	1	6785	6785		165.72	95.388	1	9326900			26496	3483	16910	16998	25449	25449					-0.03976314695751171
QSDPKPSQY	9	Unmodified	_QSDPKPSQY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2489624023438	2	525.248546	1048.48254	0.33905	0.00017808	0.26493	0.00013915	0.60397	0.00031724	525.2485969681845	20.016	0.4149	19.641	19.455	19.869	-0.37503					22	7	4	0	0	0	9.6409E-15	1	6978	6978		258.17	132.64	1	38348000			26497	3483	16910	16998	25450	25450					-0.03976314695751171
QSDPKPSQY	9	Unmodified	_QSDPKPSQY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2487182617188	2	525.248546	1048.48254	0.34309	0.00018021	0.087054	4.5725E-05	0.43014	0.00022593	525.2485219447677	19.296	0.67686	19.356	19.178	19.854	0.059828					24	12	4	0	0	0	7.3251E-11	1	6611	6611		241.96	127.76	1	18307000			26498	3483	16910	16998	25451	25451					-0.03976314695751171
QSDPKPSQY	9	Unmodified	_QSDPKPSQY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	HCT116MG_D190212_S4	4	525.2482299804688	2	525.248546	1048.48254	0.37833	0.00019872	-0.21009	-0.00011035	0.16824	8.8369E-05	525.2483434175462	19.602	0.56207	19.408	19.278	19.84	-0.19367					12	10	2	0	0	0	0.037825	1	6670	6670		80.676	42.702	1	5133900			26499	3483	16910	16998	25452	25452					-0.03976314695751171
QSDPKTSLY	9	Unmodified	_QSDPKTSLY_					0	0	0		IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant	IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	519.7587280273438	2	519.758746	1037.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.539	1	28.334	27.834	28.834	-0.20593								0	0	0	0.55145	1	10332	10332		26.268	0.86883	1				26500	817	16911	16999	25453	25453					-0.014311440359506378
QSDPSGAYF	9	Unmodified	_QSDPSGAYF_					0	0	0		ENSG00000106588|ENST00000223321|PSMA2;ENST00000411875.1_1_7:42961455-42966220:-|nuORF;ENST00000433579.1_1_7:42952135-42964395:-|nuORF	ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	MULTI-MSMS	HCT116MG_D190212_S3	3	971.4110107421875	1	971.410502	970.403226	0.49315	0.00047905	0.034123	3.3147E-05	0.52727	0.00051219	971.4105037159786	40.387	0.31212	40.085	39.955	40.267	-0.30161					9	5	2	0	0	0	1.6431E-08	1	15003	15003		231.69	164.34	1	7245400			26501	2086	16912	17000	25454	25454					-0.08315961649896053
QSDPSGAYF	9	Unmodified	_QSDPSGAYF_					0	0	0		ENSG00000106588|ENST00000223321|PSMA2;ENST00000411875.1_1_7:42961455-42966220:-|nuORF;ENST00000433579.1_1_7:42952135-42964395:-|nuORF	ENSG00000106588|ENST00000223321|PSMA2	ENSG00000106588|ENST00000223321|PSMA2	MULTI-MATCH	HCT116MG_D190212_S2	2		1	971.410502	970.403226	0.6812	0.00066172	-0.79446	-0.00077174	-0.11326	-0.00011002	971.4092721250198	40.193	0.31229	40.12	39.945	40.258	-0.072838	0.017524	-0.00071138	NaN	231.69	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11633000			26502	2086	16912	17000							-0.08315961649896053
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	557.2296752929688	2	557.229496	1112.44444	0.69553	0.00038757	0.29471	0.00016422	0.99024	0.00055179	557.2297948715129	28.372	0.42516	28.372	28.216	28.641	0					10	7	2	0	0	0	0.021434	1	10352	10352		117.76	68.206	1	6670000			26503	2041	16913	17001	25455	25455					-0.10728568672698202
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	557.2293090820312	2	557.229496	1112.44444	0.30801	0.00017163	0.11125	6.1994E-05	0.41926	0.00023363	557.2292021676155	28.724	0.35685	28.408	28.198	28.555	-0.31613					12	6	3	0	0	0	0.013156	1	10493	10493		136.39	69.935	1	32091000			26504	2041	16913	17001	25456	25456					-0.10728568672698202
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1113.4520263671875	1	1113.45172	1112.44444	0.50598	0.00056338	-0.53804	-0.00059909	-0.032066	-3.5704E-05	1113.451014129828	28.744	0.25484	28.428	28.249	28.504	-0.31613					6	4	2	0	0	0	0.00081196	1	10513	10513		179.28	96.754	1	19771000			26505	2041	16913	17001	25457	25457					-0.10728568672698202
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	557.2295532226562	2	557.229496	1112.44444	0.61094	0.00034043	-0.28875	-0.0001609	0.32219	0.00017953	557.2292642985242	28.773	0.62468	28.551	28.265	28.89	-0.22195					29	11	4	0	0	0	0.010123	2	10406	10377;10406		148.27	81.811	1	73942000			26506	2041	16913	17001	25458;25459	25459					-0.10728568672698202
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	1113.452392578125	1	1113.45172	1112.44444	0.60734	0.00067625	-0.34588	-0.00038512	0.26147	0.00029113	1113.451597111148	28.768	0.41647	28.548	28.371	28.787	-0.22038					19	7	4	0	0	0	0.0015699	1	10407	10407		176.43	101.5	1	24675000			26507	2041	16913	17001	25460	25460					-0.10728568672698202
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S4	4	557.2295532226562	2	557.229496	1112.44444	0.29319	0.00016338	0.068263	3.8038E-05	0.36145	0.00020141	557.2294411667137	28.837	0.51915	28.496	28.263	28.782	-0.34059					18	9	3	0	0	0	0.013156	1	10368	10368		136.39	69.935	1	24232000			26508	2041	16913	17001	25461	25461					-0.10728568672698202
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S4	4	1113.453369140625	1	1113.45172	1112.44444	0.50073	0.00055754	0.4202	0.00046787	0.92093	0.0010254	1113.4523650831693	28.871	0.31159	28.53	28.366	28.678	-0.34059					9	5	2	0	0	0	1.5755E-06	1	10401	10401		205.91	120.64	1	4954300			26509	2041	16913	17001	25462	25462					-0.10728568672698202
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(110)Y	0	0	1		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	565.226806640625	2	565.226953	1128.43935	0.52309	0.00029566	-0.41306	-0.00023347	0.11003	6.219E-05	565.2266904026283	22.173	0.36406	21.788	21.583	21.947	-0.3851					14	6	3	0	0	0	0.027339	1	7849	7849		107.1	61.36	1	13801000			26510	2041	16913	17002	25463	25463		40			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(160)Y	0	0	1		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	565.2269287109375	2	565.226953	1128.43935	0.40748	0.00023032	-0.13338	-7.5391E-05	0.2741	0.00015493	565.2268954188464	22.007	0.57292	22.007	21.781	22.354	0.00074387					26	10	3	0	0	0	0.0081677	1	7670	7670		159.1	88.769	1	17401000			26511	2041	16913	17002	25464	25464		40			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(170)Y	0	0	1		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S4	4	565.2269897460938	2	565.226953	1128.43935	0.37228	0.00021042	0.05243	2.9635E-05	0.42471	0.00024006	565.2269750021685	22.241	0.46732	22.013	21.728	22.195	-0.22777					21	8	3	0	0	0	0.0045823	1	7668	7668		168.54	98.206	1	10828000			26512	2041	16913	17002	25465	25465		40			-0.1197287253532977
QSDSQSYSTSY	11	Unmodified	_QSDSQSYSTSY_					0	0	0			REV__nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	REV__nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	626.7520141601562	2	626.751847	1251.48914	0.58349	0.0003657	0.11903	7.46E-05	0.70252	0.0004403	626.7518708911168	25.422	0.62596	25.422	25.197	25.823	0					30	11	4	0	0	0	0.57136	1	9127	9127		38.615	6.5773	1	129440000	+		26513	13048	16914	17003	25466	25466					-0.12654466325693647
QSDSQSYSTSY	11	Unmodified	_QSDSQSYSTSY_					0	0	0			REV__nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	REV__nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	626.7520141601562	2	626.751847	1251.48914	0.46556	0.00029179	0.11862	7.4347E-05	0.58418	0.00036614	626.7518748795444	25.686	0.6755	25.317	25.135	25.81	-0.36914					32	12	4	0	0	0	0.6626	1	9263	9263		28.495	3.5035	1	301060000	+		26514	13048	16914	17003	25467	25467					-0.12654466325693647
QSDSQSYSTSY	11	Unmodified	_QSDSQSYSTSY_					0	0	0			REV__nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	REV__nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	626.751847	1251.48914	0.58349	0.0003657	0.11903	7.46E-05	0.70252	0.0004403	626.7518708911168	25.422	0.62596	25.422	25.197	25.823	0	0.052472	1.3599E-07	NaN	38.615	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129440000	+		26515	13048	16914	17003							-0.12654466325693647
QSDSQSYSTSY	11	Unmodified	_QSDSQSYSTSY_					0	0	0			REV__nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	REV__nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	626.751847	1251.48914	0.46556	0.00029179	0.11862	7.4347E-05	0.58418	0.00036614	626.7518748795444	25.686	0.6755	25.317	25.135	25.81	-0.36914	-0.052472	-3.7029E-07	NaN	38.615	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301060000	+		26516	13048	16914	17003							-0.12654466325693647
QSDVIHQSVY	10	Unmodified	_QSDVIHQSVY_					0	0	0		AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant;ENSG00000106546|ENST00000242057|AHR	AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant	AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	588.2885131835938	2	588.288202	1174.56185	0.75041	0.00044146	-0.49133	-0.00028904	0.25909	0.00015242	588.2879131339862	31.054	0.31247	31.054	30.867	31.18	0					11	5	3	0	0	0	0.021392	1	11436	11436		117.84	68.283	1	9752800			26517	85	16915	17004	25468	25468					-0.018446677416022794
QSDVIHQSVY	10	Unmodified	_QSDVIHQSVY_					0	0	0		AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant;AHR|p.F562Sfs*16|1|0.24|ENSG00000106546|chr7:17339506-17339506|T/-|frameshift_variant;ENSG00000106546|ENST00000242057|AHR	AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant	AHR|p.D549Vfs*28|1|0.18|ENSG00000106546|chr7:17339471-17339474|ATTT/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	588.288202	1174.56185	0.6954	0.00040909	-1.3999	-0.00082355	-0.7045	-0.00041445	588.7888216368437	31.267	0.20648	31	30.87	31.077	-0.26704	-0.027454	-0.00093032	NaN	117.84	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9004800			26518	85	16915	17004							-0.018446677416022794
QSEEARRLLGY	11	Unmodified	_QSEEARRLLGY_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF;ENSG00000240682|ENST00000393295|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	MSMS	HCT116MG_D190212_S1	1	661.3466796875	2	661.346583	1320.67861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.684	1	35.684	35.184	36.184	0								0	0	0	0.33476	1	13282	13282		67.081	43.06	1				26519	9651	16916	17005	25469	25469					0.031100704781465538
QSEEARRLLGY	11	Unmodified	_QSEEARRLLGY_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF;ENSG00000240682|ENST00000393295|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	MULTI-MSMS	HCT116MG_D190212_S2	2	661.3466796875	2	661.346583	1320.67861	0.58254	0.00038526	0.21331	0.00014107	0.79585	0.00052634	661.3467140916927	35.665	0.25699	35.523	35.386	35.643	-0.14245					11	4	3	0	0	0	0.036492	1	13333	13333		146.68	95.265	1	33119000			26520	9651	16916	17005	25470	25470					0.031100704781465538
QSEEARRLLGY	11	Unmodified	_QSEEARRLLGY_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF;ENSG00000240682|ENST00000393295|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	MSMS	HCT116MG_D190212_S2	2	441.233642578125	3	441.233481	1320.67861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.734	1	35.592	35.092	36.092	-0.14245								0	0	0	0.70304	1	13340	13340		38.559	27.494	1				26521	9651	16916	17005	25471	25471					0.031100704781465538
QSEEARRLLGY	11	Unmodified	_QSEEARRLLGY_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF;ENSG00000240682|ENST00000393295|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	661.346583	1320.67861	0.8441	0.00055824	0.064913	4.293E-05	0.90901	0.00060117	661.3464045408226	35.625	0.15518	35.625	35.526	35.682	0	0.051041	-0.00016362	NaN	146.68	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9854300			26522	9651	16916	17005							0.031100704781465538
QSEEAVAAY	9	Unmodified	_QSEEAVAAY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	HCT116MG_D190212_S2	2	967.436767578125	1	967.436717	966.429441	0.86444	0.00083629	0.042971	4.1572E-05	0.90741	0.00087787	967.4365010555875	29.667	0.25807	29.366	29.237	29.495	-0.30095					6	4	2	0	0	0	0.027442	1	10911	10911		88.954	25.391	1	13523000			26523	3609	16917	17006	25472	25472					-0.05511692478432906
QSEEAVAAY	9	Unmodified	_QSEEAVAAY_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	HCT116MG_D190212_S3	3	967.435791015625	1	967.436717	966.429441	0.74804	0.00072368	-0.35478	-0.00034323	0.39326	0.00038046	967.4356729464151	29.801	0.26635	29.564	29.396	29.662	-0.23655					6	4	2	0	0	0	0.0094709	1	10860	10860		114.65	61.073	1	4188500			26524	3609	16917	17006	25473	25473					-0.05511692478432906
QSEKDACVFY	10	Carbamidomethyl (C)	_QSEKDAC(Carbamidomethyl (C))VFY_	QSEKDAC(1)VFY		QSEKDAC(60)VFY		0	1	0			REV__ENSG00000171722|ENST00000367935|SPATA46	REV__ENSG00000171722|ENST00000367935|SPATA46	MULTI-MSMS	HCT116MG_D190212_S2	2	1246.54150390625	1	1246.54086	1245.53359	0.5638	0.0007028	-0.18894	-0.00023552	0.37486	0.00046727	1246.540143156683	45.939	0.25676	45.837	45.71	45.966	-0.1014					10	4	3	0	0	0	0.19283	1	17515	17515		60.074	12.48	1	22926000	+		26525	13357	16918	17007	25474	25474	56				-0.0793573371322509
QSEKFRPPE	9	Unmodified	_QSEKFRPPE_					0	0	0		ENSG00000198700|ENST00000361565|IPO9;ENST00000479374.1_1_1:201816429-201819601:+|nuORF	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	HCT116MG_D190212_S2	2	373.5569763183594	3	373.192734	1116.55637	0.020218	7.5451E-06	-0.55757	-0.00020808	-0.53735	-0.00020054	373.192481336889	31.681	0.20833	31.432	31.302	31.51	-0.24883					5	3	2	0	0	0	0.26072	1	11721	11721		5.4027	1.5264	1	11781000			26526	6253	16919	17008	25475	25475					0.002756534665650179
QSEKIKDIP	9	Unmodified	_QSEKIKDIP_					0	0	0			REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	529.2981567382812	2	529.298039	1056.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.394	1	30.144	29.644	30.644	-0.24946								0	0	0	0.14112	1	11075	11075		51.63	7.2228	1		+		26527	12909	16920	17009	25476	25476					0.0554970826913177
QSELRRRWHRW	11	Unmodified	_QSELRRRWHRW_					0	0	0		ENSG00000215644|ENST00000400723|GCGR	ENSG00000215644|ENST00000400723|GCGR	ENSG00000215644|ENST00000400723|GCGR	MSMS	HCT116MG_D190212_S1	1	805.4332275390625	2	805.432181	1608.84981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.968	1	45.968	45.468	46.468	0								0	0	0	0.96138	1	17428	17428		1.0715	0.72083	1				26528	6453	16921	17010	25477	25477					0.06973865359964293
QSELRRRWHRW	11	Unmodified	_QSELRRRWHRW_					0	0	0		ENSG00000215644|ENST00000400723|GCGR	ENSG00000215644|ENST00000400723|GCGR	ENSG00000215644|ENST00000400723|GCGR	MULTI-MSMS	HCT116MG_D190212_S2	2	805.4306030273438	2	805.432181	1608.84981	1.0548	0.00084961	-2.1171	-0.0017052	-1.0622	-0.00085557	805.430301398553	42.525	0.52012	42.455	42.221	42.741	-0.069984					10	9	2	0	0	0	0.74191	1	16100	16100		0.26902	0	1	57864000			26529	6453	16921	17010	25478	25478					0.06973865359964293
QSELVGQLY	9	Unmodified	_QSELVGQLY_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MULTI-MSMS	HCT116MG_D190212_S2	2	1036.5308837890625	1	1036.53095	1035.52368	0.56738	0.00058811	-0.20542	-0.00021292	0.36197	0.00037519	1036.530930059025	46.34	0.20711	46.229	46.11	46.317	-0.11121					5	3	2	0	0	0	0.0042464	1	17680	17680		147.06	75.926	1	12819000			26530	1488	16922	17011	25479	25479					0.007334463437246086
QSELVGQLY	9	Unmodified	_QSELVGQLY_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MULTI-MSMS	HCT116MG_D190212_S3	3	518.7689208984375	2	518.769114	1035.52368	0.45719	0.00023718	-0.32516	-0.00016868	0.13204	6.8496E-05	518.7688956256613	46.569	0.41697	46.257	46.126	46.543	-0.31237					11	7	2	0	0	0	0.023778	1	17477	17477		92.653	24.573	1	8764300			26531	1488	16922	17011	25480	25480					0.007334463437246086
QSELVGQLY	9	Unmodified	_QSELVGQLY_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MULTI-MSMS	HCT116MG_D190212_S3	3	1036.53125	1	1036.53095	1035.52368	0.72648	0.00075301	0.0059263	6.1428E-06	0.7324	0.00075916	1036.530680649434	46.569	0.26048	46.257	46.126	46.387	-0.31237					7	4	2	0	0	0	0.0034935	1	17494	17494		166.45	84.835	1	4871800			26532	1488	16922	17011	25481	25481					0.007334463437246086
QSELVGQLY	9	Unmodified	_QSELVGQLY_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MULTI-SECPEP	HCT116MG_D190212_S4	4	519.1390380859375	2	518.769114	1035.52368	0.40483	0.00021001	0.23454	0.00012167	0.63937	0.00033168	518.7694119360161	46.601	0.22637	46.23	46.102	46.328	-0.37134					6	4	2	0	0	0	0.25656	1	17201	17201		5.7319	0	1	1919400			26533	1488	16922	17011	25482	25482					0.007334463437246086
QSETSGSANY	10	Unmodified	_QSETSGSANY_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S1	1	522.2177124023438	2	522.217443	1042.42033	0.31884	0.0001665	0.05572	2.9098E-05	0.37456	0.0001956	522.2175665468568	19.73	0.26139	19.73	19.6	19.861	0					7	4	2	0	0	0	0.041964	1	6872	6872		93.166	93.166	1	4542900			26534	2498	16923	17012	25483	25483					-0.09918085834760859
QSETSGSANY	10	Unmodified	_QSETSGSANY_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S2	2	522.2174682617188	2	522.217443	1042.42033	0.27976	0.0001461	0.047045	2.4568E-05	0.32681	0.00017067	522.217346709714	20.058	0.31171	19.683	19.558	19.869	-0.37503					13	5	3	0	0	0	0.011502	1	7000	7000		140.63	89.778	1	19833000			26535	2498	16923	17012	25484	25484					-0.09918085834760859
QSETSGSANY	10	Unmodified	_QSETSGSANY_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MSMS	HCT116MG_D190212_S2	2	1043.42724609375	1	1043.42761	1042.42033	0.68028	0.00070982	-0.71979	-0.00075105	-0.039514	-4.123E-05	1043.4267421655404	20.062	0.20738	19.687	19.558	19.765	-0.37503					6	3	2	0	0	0	0.26262	1	7018	7018		53.833	19.73	1	10047000			26536	2498	16923	17012	25485	25485					-0.09918085834760859
QSETSGSANY	10	Unmodified	_QSETSGSANY_					0	0	0		nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-2|NFE2L2	nc|ENSG00000116044|Q16236-2|NFE2L2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	522.217443	1042.42033	0.29817	0.00015571	0.35693	0.0001864	0.65511	0.00034211	522.2176583364625	19.612	0.31252	19.672	19.542	19.854	0.05983	-0.023058	0.00030481	NaN	140.63	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3157900			26537	2498	16923	17012							-0.09918085834760859
QSETVEPPPP	10	Unmodified	_QSETVEPPPP_					0	0	0		NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant;ENSG00000148400|ENST00000651671|NOTCH1	NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	NOTCH1|p.Q2403Sfs*19|1|0.51|ENSG00000148400|chr9:136496532-136496532|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	540.7876586914062	2	540.764029	1079.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.841	1	29.841	29.341	30.341	0								0	0	0	0.61644	1	10922	10922		41.84	3.6641	1				26538	4022	16924	17013	25486	25486					-0.023071613815318415
QSEVESTEY	9	Unmodified	_QSEVESTEY_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MSMS	HCT116MG_D190212_S1	1	536.2273559570312	2	536.227476	1070.4404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.284	1	26.284	25.784	26.784	0								0	0	0	0.69648	1	9490	9490		19.257	6.7254	1				26539	3346	16925	17014	25487	25487					-0.09200334894808293
QSEVESTEY	9	Unmodified	_QSEVESTEY_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2271728515625	2	536.227476	1070.4404	0.58165	0.00031189	-0.44105	-0.0002365	0.1406	7.5393E-05	536.2270933074185	26.482	0.20831	26.333	26.203	26.411	-0.14924					6	3	2	0	0	0	0.49616	1	9529	9529		17.113	1.2657	1	3935100			26540	3346	16925	17014	25488	25488					-0.09200334894808293
QSFGVCVY	8	Unmodified	_QSFGVCVY_					0	0	0			REV__ENST00000556154.5_1_14:92406940-92413135:-|nuORF	REV__ENST00000556154.5_1_14:92406940-92413135:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	902.4080810546875	1	902.407666	901.400389	0.96129	0.00086747	-0.057261	-5.1673E-05	0.90403	0.0008158	902.407445503087	45.167	0.41663	45.075	44.891	45.307	-0.092472					11	7	2	0	0	0	0.21487	1	17171	17171		70.716	7.1527	1	65748000	+		26541	16461	16926	17015	25489	25489					-0.05425508308405824
QSFGVCVY	8	Unmodified	_QSFGVCVY_					0	0	0			REV__ENST00000556154.5_1_14:92406940-92413135:-|nuORF	REV__ENST00000556154.5_1_14:92406940-92413135:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	902.407666	901.400389	0.96129	0.00086747	-0.057261	-5.1673E-05	0.90403	0.0008158	902.407445503087	45.167	0.41663	45.075	44.891	45.307	-0.092472	-0.017214	-0.00014262	NaN	70.716	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65748000	+		26542	16461	16926	17015							-0.05425508308405824
QSFSQQEPQPQ	11	Unmodified	_QSFSQQEPQPQ_					0	0	0			REV__ENST00000584346.1_1_18:10724726-10725338:+|nuORF	REV__ENST00000584346.1_1_18:10724726-10725338:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	652.489501953125	2	652.299298	1302.58404	0.57452	0.00037476	-0.64759	-0.00042242	-0.073068	-4.7662E-05	652.2987997246277	30.655	0.50513	30.401	30.21	30.715	-0.25399					20	15	2	0	0	0	0.73696	1	11160	11160		8.1555	8.1555	1	8582000	+		26543	16642	16927	17016	25490	25490					-0.055144880638636096
QSFYWHWPH	9	Unmodified	_QSFYWHWPH_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	HCT116MG_D190212_S2	2	644.2888793945312	2	644.28834	1286.56213	0.60354	0.00038885	0.34798	0.0002242	0.95152	0.00061306	644.2884624085676	19.804	0.31155	19.429	19.246	19.558	-0.37503					15	5	4	0	0	0	0.22969	1	6889	6889		30.225	30.225	1	44154000	+		26544	10748	16928	17017	25491	25491					-0.06969203231119536
QSFYWHWPH	9	Unmodified	_QSFYWHWPH_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	HCT116MG_D190212_S4	4	644.2890625	2	644.28834	1286.56213	0.46906	0.00030221	0.3741	0.00024103	0.84316	0.00054324	644.2885648690151	19.394	0.41583	19.207	19.077	19.493	-0.18674					11	7	3	0	0	0	0.22969	1	6582	6582		38.151	3.2191	1	10015000	+		26545	10748	16928	17017	25492	25492					-0.06969203231119536
QSFYWHWPH	9	Unmodified	_QSFYWHWPH_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	644.28834	1286.56213	0.57505	0.0003705	0.5539	0.00035687	1.129	0.00072737	644.2886411483146	19.313	0.31213	19.313	19.183	19.495	0	0.036453	0.0002184	NaN	30.225	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8679800	+		26546	10748	16928	17017							-0.06969203231119536
QSFYWHWPH	9	Unmodified	_QSFYWHWPH_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	644.28834	1286.56213	0.60354	0.00038885	0.34798	0.0002242	0.95152	0.00061306	644.2884624085676	19.804	0.31155	19.429	19.246	19.558	-0.37503	0.15187	-4.6948E-05	NaN	30.225	15	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44154000	+		26547	10748	16928	17017							-0.06969203231119536
QSFYWHWPH	9	Unmodified	_QSFYWHWPH_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	644.28834	1286.56213	0.53718	0.0003461	0.33754	0.00021747	0.87472	0.00056357	644.288582799827	19.089	0.36385	19.159	18.979	19.343	0.069157	-0.11841	-6.0401E-05	NaN	30.225	18	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29458000	+		26548	10748	16928	17017							-0.06969203231119536
QSGFERGCIY	10	Unmodified	_QSGFERGCIY_					0	0	0			REV__ENSG00000164185|ENST00000296600|ZNF474	REV__ENSG00000164185|ENST00000296600|ZNF474	MULTI-MSMS	HCT116MG_D190212_S3	3	580.7637329101562	2	580.263673	1158.51279	0.45577	0.00026447	-3.3462	-0.0019417	-2.8904	-0.0016772	580.7639323788724	35.094	0.36312	34.797	34.544	34.907	-0.29707					9	6	2	0	0	0	0.6277	1	12906	12906		26.268	1.5943	1	4166200	+		26549	12989	16929	17018	25493	25493					-0.06012279302194656
QSGLSLLLS	9	Unmodified	_QSGLSLLLS_					0	0	0			REV__ENST00000263980.7_1_1:27480949-27481393:-|nuORF	REV__ENST00000263980.7_1_1:27480949-27481393:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	917.5304565429688	1	917.530224	916.522947	0.74143	0.00068029	0.12885	0.00011822	0.87028	0.00079851	917.5302516690751	50.67	0.20732	50.498	50.403	50.611	-0.17191					5	3	2	0	0	0	0.012496	1	19445	19445		107.19	3.8335	1	16184000	+		26550	14658	16930	17019	25494	25494					0.06134651694674176
QSGSESLLY	9	Unmodified	_QSGSESLLY_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ANAPC4|p.R419Sfs*21|1|0.18|ENSG00000053900|chr4:25403004-25403005|-/T|frameshift_variant;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-MSMS	HCT116MG_D190212_S1	1	983.4666137695312	1	983.468017	982.460741	0.3981	0.00039152	0.57126	0.00056182	0.96936	0.00095334	983.4682744775006	42.699	0.30947	42.699	42.538	42.847	0					10	5	2	0	0	0	0.0048275	1	16109	16109		139.14	53.866	1	16896000			26551	1065	16931	17020	25495	25495					-0.031191194443181303
QSGSESLLY	9	Unmodified	_QSGSESLLY_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ANAPC4|p.R419Sfs*21|1|0.18|ENSG00000053900|chr4:25403004-25403005|-/T|frameshift_variant;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-MSMS	HCT116MG_D190212_S2	2	983.4690551757812	1	983.468017	982.460741	1.0107	0.00099398	-0.40976	-0.00040299	0.60092	0.00059099	983.4674909162151	42.749	0.41297	42.679	42.533	42.946	-0.069981					13	7	3	0	0	0	0.0038833	1	16189	16189		152.41	56.127	1	68341000			26552	1065	16931	17020	25496	25496					-0.031191194443181303
QSGSESLLY	9	Unmodified	_QSGSESLLY_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ANAPC4|p.R419Sfs*21|1|0.18|ENSG00000053900|chr4:25403004-25403005|-/T|frameshift_variant;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-MSMS	HCT116MG_D190212_S2	2	492.23748779296875	2	492.237647	982.460741	0.56743	0.00027931	-0.73808	-0.00036331	-0.17065	-8.4001E-05	492.23711584260275	42.734	0.25957	42.664	42.533	42.793	-0.069984					7	4	2	0	0	0	0.027442	1	16212	16212		88.954	23.719	1	18995000			26553	1065	16931	17020	25497	25497					-0.031191194443181303
QSHLVGVP	8	Unmodified	_QSHLVGVP_					0	0	0		AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant;ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3;ENST00000498090.1_1_2:100623057-100623988:-|nuORF;AFF3|p.H452Tfs*21|1|0.14|ENSG00000144218|chr2:99601452-99601452|G/-|frameshift_variant;AFF3|p.T616Rfs*30|1|0.17|ENSG00000144218|chr2:99593816-99593816|C/-|frameshift_variant	AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	418.7349853515625	2	418.734877	835.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.871	1	31.622	31.122	32.122	-0.24883								0	0	0	0.85589	1	11773	11773		18.135	0	1				26554	70	16932	17021	25498	25498					0.030892465545207415
QSKELLDVLIP	11	Unmodified	_QSKELLDVLIP_					0	0	0			REV__ENST00000464572.5_1_13:37614523-37618301:-|nuORF	REV__ENST00000464572.5_1_13:37614523-37618301:-|nuORF	MSMS	HCT116MG_D190212_S1	1	627.8682250976562	2	627.868828	1253.7231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.49	1	40.49	39.99	40.99	0								0	0	0	0.93607	1	15220	15220		13.615	4.8695	1		+		26555	11160	16933	17022	25499	25499					0.10639081571616771
QSKPPRRRRRR	11	Unmodified	_QSKPPRRRRRR_					0	0	0		ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	499.3004455566406	3	498.310052	1491.90833	0.37042	0.00018458	0.086268	4.2988E-05	0.45668	0.00022757	498.6444511933896	54.722	1.828	54.426	53.042	54.87	-0.29587					90	34	4	0	0	0	0.74191	1	20866	20866		0.073264	0.073264	1	17822000			26556	6816	16934	17023	25500	25500					0.18204966725102167
QSLKKQDTP	9	Unmodified	_QSLKKQDTP_					0	0	0		CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant;ENSG00000079112|ENST00000027335|CDH17	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	CDH17|p.S645Lfs*3|1|0.55|ENSG00000079112|chr8:94146163-94146163|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	522.78759765625	2	522.787838	1043.56112	0.4303	0.00022495	-0.45947	-0.00024021	-0.029178	-1.5254E-05	522.7876080394699	24.701	0.6251	24.321	23.874	24.499	-0.38003					18	11	2	0	0	0	0.26536	1	8833	8833		34.402	1.616	1	8911500			26557	383	16935	17024	25501	25501					0.04108537609317864
QSNALQEREDD	11	Unmodified	_QSNALQEREDD_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	HCT116MG_D190212_S1	1	652.7896118164062	2	652.789295	1303.56404	0.62136	0.00040562	-0.011774	-7.6861E-06	0.60959	0.00039793	652.7892936831657	18.817	0.15631	18.817	18.714	18.871	0					4	2	2	0	0	0	0.74191	1	6511	6511		4.1895	4.1895	1	2308200			26558	6118	16936	17025	25502	25502					-0.0756028379446434
QSNSTKKSNYF	11	Unmodified	_QSNSTKKSNYF_					0	0	0			REV__ENST00000533568.5_1_11:77069900-77103583:-|nuORF	REV__ENST00000533568.5_1_11:77069900-77103583:-|nuORF	MSMS	HCT116MG_D190212_S2	2	652.0015258789062	2	652.317491	1302.62043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.96	1	31.73	31.23	32.23	-0.23009								0	0	0	0.94145	1	11809	11809		10.8	2.644	1		+		26559	12562	16937	17026	25503	25503					-0.018776111671513718
QSPEALADMYQ	11	Unmodified	_QSPEALADMYQ_					0	0	0		nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	nc|ENSG00000101311|Q9BQL6-4|FERMT1	MULTI-SECPEP	HCT116MG_D190212_S3	3	627.31005859375	2	626.779353	1251.54415	0.15175	9.5113E-05	2.2018	0.00138	2.3535	0.0014751	626.7804491287064	17.766	0.46829	17.847	17.43	17.898	0.081356					10	8	2	0	0	0	0.34063	1	5836	5836		22.658	7.4096	1	1110200			26560	1775	16938	17027	25504	25504					-0.07155751058780879
QSPEQAQP	8	Unmodified	_QSPEQAQP_					0	0	0			REV__ENST00000318911.4_1_8:145152248-145152320:+|nuORF	REV__ENST00000318911.4_1_8:145152248-145152320:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	884.4118041992188	1	884.410837	883.40356	0.78081	0.00069056	0.53701	0.00047494	1.3178	0.0011655	884.4111748745408	15.241	0.25995	15.324	15.142	15.402	0.083271					7	4	2	0	0	0	0.41924	1	4996	4996		48.346	0	1	1253400	+		26561	14876	16939	17028	25505	25505					-0.042805419300407266
QSPFPPPLLVL	11	Unmodified	_QSPFPPPLLVL_					0	0	0			REV__ENST00000417262.5_1_1:202780753-202780990:+|nuORF	REV__ENST00000417262.5_1_1:202780753-202780990:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	605.760009765625	2	604.357899	1206.70125	0.77086	0.00046587	-0.46457	-0.00028077	0.30628	0.0001851	604.357294267678	61.387	1.6466	61.245	60.739	62.385	-0.14227					78	31	3	0	0	0	0.74191	1	24095	24095		0.96228	0.96228	1	7959900	+		26562	15487	16940	17029	25506	25506					0.10616321613701984
QSPKEPFQQ	9	Unmodified	_QSPKEPFQQ_					0	0	0		ENST00000318967.6_2_1:153745913-153746129:+|nuORF	ENST00000318967.6_2_1:153745913-153746129:+|nuORF	ENST00000318967.6_2_1:153745913-153746129:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	545.2734375	2	544.772188	1087.52982	0.5738	0.00031259	-0.28973	-0.00015784	0.28408	0.00015476	544.7719820142036	29.242	1.1484	29.02	28.421	29.57	-0.22195					31	21	2	0	0	0	0.53593	1	10693	10693		14.838	3.198	1	7498800			26563	7093	16941	17030	25507	25507					-0.0104403542475211
QSPQHAEMCL	10	Unmodified	_QSPQHAEMCL_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MSMS	HCT116MG_D190212_S4	4	572.2489624023438	2	572.249708	1142.48486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.876	1	14.715	14.215	15.215	-0.16089								0	0	0	0.92607	1	4749	4749		10.074	2.1638	1				26564	2407	16942	17031	25508	25508					-0.08067925553950772
QSQRFLHDP	9	Unmodified	_QSQRFLHDP_					0	0	0		nc|ENSG00000031003|Q9NYF5-3|FAM13B;FAM13B|p.F782Lfs*18|2|0.29|ENSG00000031003|chr5:137943145-137943145|A/-|frameshift_variant;nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B	nc|ENSG00000031003|Q9NYF5-3|FAM13B	nc|ENSG00000031003|Q9NYF5-3|FAM13B	MSMS	HCT116MG_D190212_S4	4	564.281982421875	2	564.283254	1126.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.868	1	36.483	35.983	36.983	-0.38486								0	0	0	0.76759	1	13508	13508		9.3831	0.035688	1				26565	967	16943	17032	25509	25509					-0.00625810956330497
QSQRQKPHDY	10	Unmodified	_QSQRQKPHDY_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|159|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|159|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|159|3|sense	MULTI-SECPEP	HCT116MG_D190212_S2	2	644.31787109375	2	643.81545	1285.61635	0.61274	0.00039449	0.53668	0.00034552	1.1494	0.00074001	644.3173958875669	17.614	0.20877	17.258	17.127	17.336	-0.35647					7	3	3	0	0	0	0.31081	1	6031	6031		2.7352	0	1	8018900			26566	9280	16944	17033	25510	25510					-0.015036558701922331
QSQYQALEKKY	11	Unmodified	_QSQYQALEKKY_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MSMS	HCT116MG_D190212_S3	3	693.3558959960938	2	693.356616	1384.69868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.79	1	28.568	28.068	29.068	-0.22195								0	0	0	0.9387	1	10433	10433		12.241	0	1				26567	4377	16945	17034	25511	25511					0.02171821418073705
QSRLQEEHSL	10	Unmodified	_QSRLQEEHSL_					0	0	0		ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MSMS	HCT116MG_D190212_S4	4	613.81005859375	2	613.809833	1225.60511	0.63776	0.00039147	-0.2704	-0.00016597	0.36737	0.00022549	613.8096745780559	31.68	0.3117	31.309	31.127	31.439	-0.37026					9	5	2	0	0	0	0.76143	1	11501	11501		15.248	2.3759	1	3278500			26568	1489	16946	17035	25512	25512					0.0013352203566228127
QSRRQKLKIKV	11	Unmodified	_QSRRQKLKIKV_					0	0	0			REV__ZNRF3|p.A281Pfs*58|1|0.48|ENSG00000183579|chr22:29046809-29046809|G/-|frameshift_variant	REV__ZNRF3|p.A281Pfs*58|1|0.48|ENSG00000183579|chr22:29046809-29046809|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	692.4498291015625	2	692.448977	1382.8834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.322	1	59.058	58.558	59.558	-0.26405								0	0	0	0.96149	1	22588	22588		0.30703	0	1		+		26569	13768	16947	17036	25513	25513					0.20727474079126296
QSSLETHHY	9	Unmodified	_QSSLETHHY_					0	0	0		ENST00000549287.1_1_12:48360426-48362009:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C	ENST00000549287.1_1_12:48360426-48362009:+|nuORF	ENST00000549287.1_1_12:48360426-48362009:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	551.2515869140625	2	551.25162	1100.48869	0.54184	0.00029869	-0.1009	-5.5621E-05	0.44094	0.00024307	551.2514879495981	20.149	0.20893	20.149	20.018	20.227	0					9	3	3	0	0	0	0.0063854	1	7037	7037		141.83	90.197	1	13378000			26570	3277	16948	17037	25514	25514					-0.057537964642278894
QSSLETHHY	9	Unmodified	_QSSLETHHY_					0	0	0		ENST00000549287.1_1_12:48360426-48362009:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C	ENST00000549287.1_1_12:48360426-48362009:+|nuORF	ENST00000549287.1_1_12:48360426-48362009:+|nuORF	MSMS	HCT116MG_D190212_S1	1	367.83673095703125	3	367.836839	1100.48869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.211	1	20.211	19.711	20.711	0								0	0	0	0.76793	1	7051	7051		8.1555	1.9497	1				26571	3277	16948	17037	25515	25515					-0.057537964642278894
QSSLETHHY	9	Unmodified	_QSSLETHHY_					0	0	0		ENST00000549287.1_1_12:48360426-48362009:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C	ENST00000549287.1_1_12:48360426-48362009:+|nuORF	ENST00000549287.1_1_12:48360426-48362009:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	551.2520141601562	2	551.25162	1100.48869	0.3975	0.00021912	0.34905	0.00019241	0.74654	0.00041153	551.2518263498276	20.799	0.20884	20.42	20.289	20.498	-0.37949					6	3	2	0	0	0	0.0082095	1	7300	7300		144.35	77.894	1	31627000			26572	3277	16948	17037	25516	25516					-0.057537964642278894
QSSYGQDGMY	10	Unmodified	_QSSYGQDGMY_					0	0	0		RNASE4|p.P25S|1|0.5|ENSG00000258818|chr14:20699444-20699444|C/T|missense_variant	RNASE4|p.P25S|1|0.5|ENSG00000258818|chr14:20699444-20699444|C/T|missense_variant	RNASE4|p.P25S|1|0.5|ENSG00000258818|chr14:20699444-20699444|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	568.2779541015625	2	568.221671	1134.42879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.818	1	28.478	27.978	28.978	-0.34059								0	0	0	0.83884	1	10380	10380		23.79	10.175	1				26573	18112	16949	17038	25517	25517					-0.13304855189767295
QSVVTWPE	8	Unmodified	_QSVVTWPE_					0	0	0			REV__ENSG00000197608|ENST00000594440|ZNF841	REV__ENSG00000197608|ENST00000594440|ZNF841	MULTI-SECPEP	HCT116MG_D190212_S3	3	945.4205932617188	1	945.467623	944.460347	0.50559	0.00047802	2.8922	0.0027345	3.3978	0.0032125	945.4702809037938	47.92	0.36478	47.604	47.462	47.827	-0.31596					9	6	2	0	0	0	0.26426	1	17990	17990		20.454	0	1	3314100	+		26574	14082	16950	17039	25518	25518					-0.014104943735333109
QTAAKLNKHV	10	Unmodified	_QTAAKLNKHV_					0	0	0		GZMK|p.I219Dfs*3|1|0.36|ENSG00000113088|chr5:55033773-55033774|-/G|frameshift_variant;ENSG00000113088|ENST00000231009|GZMK	GZMK|p.I219Dfs*3|1|0.36|ENSG00000113088|chr5:55033773-55033774|-/G|frameshift_variant	GZMK|p.I219Dfs*3|1|0.36|ENSG00000113088|chr5:55033773-55033774|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	555.7714233398438	2	555.324922	1108.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.81	1	23.748	23.248	24.248	-0.061449								0	0	0	0.91971	1	8425	8425		11.495	0	1				26575	2368	16951	17040	25519	25519					0.08531925491502079
QTALHLAVHL	10	Unmodified	_QTALHLAVHL_					0	0	0		ENSG00000146232|ENST00000619360|NFKBIE;nc|ENSG00000146232|O00221|NFKBIE	ENSG00000146232|ENST00000619360|NFKBIE	ENSG00000146232|ENST00000619360|NFKBIE	MSMS	HCT116MG_D190212_S1	1	368.2171936035156	3	368.217102	1101.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.306	1	57.306	56.806	57.806	0								0	0	0	0.95241	1	22049	22049		4.1895	1.1943	1				26576	3942	16952	17041	25520	25520					0.08272826979850834
QTALVELVK	9	Unmodified	_QTALVELVK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	500.8055419921875	2	500.8055	999.596446	0.30587	0.00015318	0.10666	5.3418E-05	0.41254	0.0002066	500.80548162110756	43.082	0.26004	43.082	42.9	43.16	0					10	4	3	0	0	0	0.032914	1	16272	16272		83.429	25.707	1	19610000		+	26577	554	16953	17042	25521	25521					0.09663200137140393
QTALVELVK	9	Unmodified	_QTALVELVK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S3	3	500.805419921875	2	500.8055	999.596446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.319	1	43.015	42.515	43.515	-0.30472								0	0	0	0.009837	1	16160	16160		107.1	49.378	1			+	26578	554	16953	17042	25522	25522					0.09663200137140393
QTALVELVK	9	Unmodified	_QTALVELVK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	501.3075256347656	2	500.8055	999.596446	0.36018	0.00018038	0.15875	7.9505E-05	0.51893	0.00025988	500.8055556095047	43.404	0.256	43.03	42.959	43.215	-0.37433					13	7	2	0	0	0	0.012531	1	15957	15957		107.1	55.47	1	8069600		+	26579	554	16953	17042	25523	25523					0.09663200137140393
QTATDEAFTV	10	Unmodified	_QTATDEAFTV_					0	0	0		MATN3|p.M170T|1|0.33|ENSG00000132031|chr2:20006025-20006025|A/G|missense_variant	MATN3|p.M170T|1|0.33|ENSG00000132031|chr2:20006025-20006025|A/G|missense_variant	MATN3|p.M170T|1|0.33|ENSG00000132031|chr2:20006025-20006025|A/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	541.4105224609375	2	541.753661	1081.49277	0.55539	0.00030089	-0.30237	-0.00016381	0.25302	0.00013708	541.7535251326127	47.139	0.20706	47.139	46.958	47.165	0					5	3	2	0	0	0	0.3111	1	17854	17854		1.6526	0	1	5928300			26580	9320	16954	17043	25524	25524					-0.044717517611843505
QTATTTMVY	9	Unmodified	_QTATTTMVY_					0	0	0		QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant;ENSG00000198218|ENST00000395443|QRICH1;QRICH1|p.Y63Sfs*8|1|0.11|ENSG00000198218|chr3:49076832-49076833|-/ATGGGAA|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1015.475830078125	1	1015.47647	1014.4692	1.0023	0.0010178	-0.36064	-0.00036622	0.64166	0.00065159	1015.4760564515033	35.811	0.20798	35.811	35.682	35.89	0					5	3	2	0	0	0	0.21258	1	13362	13362		39.95	9.7249	1	8419900			26581	6215	16955	17044	25525	25525					-0.03745888799357999
QTATTTMVY	9	Unmodified	_QTATTTMVY_					0	0	0		QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant;ENSG00000198218|ENST00000395443|QRICH1;QRICH1|p.Y63Sfs*8|1|0.11|ENSG00000198218|chr3:49076832-49076833|-/ATGGGAA|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1015.476806640625	1	1015.47647	1014.4692	0.28143	0.00028579	0.47492	0.00048227	0.75635	0.00076806	1015.4769189324147	36.108	0.41582	35.807	35.626	36.042	-0.30042					13	7	3	0	0	0	0.071914	1	13333	13333		63.961	31.655	1	10885000			26582	6215	16955	17044	25526	25526					-0.03745888799357999
QTATTTMVY	9	Unmodified	_QTATTTMVY_					0	0	0		QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant;ENSG00000198218|ENST00000395443|QRICH1;QRICH1|p.Y63Sfs*8|1|0.11|ENSG00000198218|chr3:49076832-49076833|-/ATGGGAA|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	508.2417907714844	2	508.241875	1014.4692	-0.11991	-6.0941E-05	0.59926	0.00030457	0.47935	0.00024363	508.24189762144965	36.108	0.26017	35.807	35.678	35.938	-0.30042					10	4	3	0	0	0	0.12205	1	13340	13340		53.833	32.086	1	8147000			26583	6215	16955	17044	25527	25527					-0.03745888799357999
QTATTTMVY	9	Unmodified	_QTATTTMVY_					0	0	0		QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant;ENSG00000198218|ENST00000395443|QRICH1;QRICH1|p.Y63Sfs*8|1|0.11|ENSG00000198218|chr3:49076832-49076833|-/ATGGGAA|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	508.2410888671875	2	508.241875	1014.4692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.217	1	35.831	35.331	36.331	-0.38558								0	0	0	0.46109	1	13245	13245		30.637	2.1497	1				26584	6215	16955	17044	25528	25528					-0.03745888799357999
QTCFDENDCEQ	11	Unmodified	_QTCFDENDCEQ_					0	0	0		OIT3|p.E185D|1|0.35|ENSG00000138315|chr10:72906606-72906606|A/T|missense_variant	OIT3|p.E185D|1|0.35|ENSG00000138315|chr10:72906606-72906606|A/T|missense_variant	OIT3|p.E185D|1|0.35|ENSG00000138315|chr10:72906606-72906606|A/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	665.7894897460938	2	666.229367	1330.44418	0.69436	0.0004626	-0.091812	-6.1168E-05	0.60254	0.00040143	666.2293293552037	23.93	0.31282	23.869	23.686	23.999	-0.061449					6	5	2	0	0	0	0.36596	1	8497	8497		0.18151	0.18151	1	2272600			26585	9713	16956	17045	25529	25529					-0.20782356454901674
QTDDPDVGLAY	11	Unmodified	_QTDDPDVGLAY_					0	0	0		COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1;COL18A1|p.R608Gfs*27|1|0.21|ENSG00000182871|chr21:45468712-45468712|C/-|frameshift_variant;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	597.2703857421875	2	597.269675	1192.5248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.398	1	41.096	40.596	41.596	-0.30185								0	0	0	0.80071	1	15399	15399		32.786	12.332	1				26586	512	16957	17046	25530	25530					-0.06376384078021147
QTDDRFHEM	9	Unmodified	_QTDDRFHEM_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	HCT116MG_D190212_S1	1	590.249267578125	2	589.748387	1177.48222	0.70328	0.00041476	-0.42286	-0.00024938	0.28042	0.00016538	589.7481259944356	26.319	0.20862	26.319	26.188	26.397	0					5	3	2	0	0	0	0.005219	1	9513	9513		160.69	116.83	1	8924000			26587	3150	16958	17047	25531	25531					-0.09942057687248962
QTDDRFHEM	9	Unmodified	_QTDDRFHEM_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	HCT116MG_D190212_S2	2	589.7485961914062	2	589.748387	1177.48222	0.52058	0.00030701	-0.32923	-0.00019416	0.19135	0.00011285	589.7484509439377	26.761	0.15692	26.409	26.293	26.45	-0.35254					6	2	3	0	0	0	0.0064252	1	9706	9706		136.39	103.61	1	24827000			26588	3150	16958	17047	25532	25532					-0.09942057687248962
QTDDRFHEM	9	Unmodified	_QTDDRFHEM_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MSMS	HCT116MG_D190212_S2	2	393.5010681152344	3	393.50135	1177.48222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.806	1	26.454	25.954	26.954	-0.35254								0	0	0	0.76638	1	9714	9714		13.615	0.74226	1				26589	3150	16958	17047	25533	25533					-0.09942057687248962
QTDERLAQY	9	Unmodified	_QTDERLAQY_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	HCT116MG_D190212_S2	2	562.2727661132812	2	562.272552	1122.53055	0.43119	0.00024244	0.47414	0.0002666	0.90533	0.00050904	562.2725441105346	28.333	0.20732	28.003	27.874	28.081	-0.32987					7	3	3	0	0	0	0.0043772	1	10340	10340		145.13	66.98	1	18914000			26590	4614	16959	17048	25534	25534					-0.025812407757030087
QTDERLAQY	9	Unmodified	_QTDERLAQY_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	HCT116MG_D190212_S3	3	562.2734375	2	562.272552	1122.53055	0.30723	0.00017275	0.15035	8.454E-05	0.45759	0.00025729	562.2724765034765	28.252	0.26114	28.046	27.968	28.229	-0.20593					5	4	2	0	0	0	0.040027	1	10243	10243		79.596	4.6673	1	4132600			26591	4614	16959	17048	25535	25535					-0.025812407757030087
QTDERLAQY	9	Unmodified	_QTDERLAQY_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	562.272552	1122.53055	0.4513	0.00025375	-0.75645	-0.00042533	-0.30515	-0.00017158	562.2722206561059	27.906	0.20829	27.906	27.8	28.008	0	-0.079427	-0.00075199	NaN	145.13	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3190300			26592	4614	16959	17048							-0.025812407757030087
QTDHLFFKY	9	Unmodified	_QTDHLFFKY_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	599.7987060546875	2	599.798206	1197.58186	0.54114	0.00032458	0.013597	8.1554E-06	0.55474	0.00033273	599.7983186308899	44.071	0.41082	43.993	43.762	44.173	-0.078373					15	7	3	0	0	0	0.0024989	1	16730	16730		184.36	125.68	1	48521000			26593	3510	16960	17049	25536	25536					-0.00902872010988176
QTDHLFFKY	9	Unmodified	_QTDHLFFKY_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	400.2012023925781	3	400.201229	1197.58186	-0.18243	-7.3008E-05	0.34324	0.00013737	0.16081	6.4357E-05	400.2013578423445	44.071	0.30761	43.993	43.813	44.121	-0.078373					11	5	3	0	0	0	0.082877	1	16733	16733		49.742	34.785	1	47100000			26594	3510	16960	17049	25537	25537					-0.00902872010988176
QTDHLFFKY	9	Unmodified	_QTDHLFFKY_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	599.798206	1197.58186	0.3825	0.00022942	0.15774	9.461E-05	0.54023	0.00032403	599.7981093695236	44.134	0.15895	44.134	44.036	44.195	0	0.076626	0.00017513	NaN	184.36	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6527400			26595	3510	16960	17049							-0.00902872010988176
QTDHLFFKY	9	Unmodified	_QTDHLFFKY_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	599.798206	1197.58186	0.78562	0.00047121	-0.083593	-5.0139E-05	0.70202	0.00042107	600.2996428862494	44.352	0.20731	44.045	43.916	44.123	-0.30759	-0.012471	-0.00011436	NaN	184.36	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4690800			26596	3510	16960	17049							-0.00902872010988176
QTDHLFFKY	9	Unmodified	_QTDHLFFKY_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	400.201229	1197.58186	0.18933	7.577E-05	-0.37608	-0.00015051	-0.18675	-7.4737E-05	400.20098639584154	44.333	0.20731	44.025	43.916	44.123	-0.30759	0.016143	-0.00074159	NaN	49.742	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2579700			26597	3510	16960	17049							-0.00902872010988176
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	HCT116MG_D190212_S1	1	583.7883911132812	2	583.788035	1165.56152	0.53215	0.00031066	0.0033327	1.9456E-06	0.53548	0.00031261	583.7879917027782	45.059	0.31163	45.059	44.88	45.192	0					14	5	4	0	0	0	6.4001E-05	1	17065	17065		159.1	103.6	1	54311000			26598	6260	16961	17050	25538	25538					-0.014640874614769928
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	HCT116MG_D190212_S2	2	583.7882690429688	2	583.788035	1165.56152	0.60439	0.00035284	0.28201	0.00016464	0.8864	0.00051747	583.7880914046937	45.139	0.36497	45.046	44.891	45.256	-0.092472					12	6	3	0	0	0	0.038541	1	17170	17170		121.35	65.843	1	50083000			26599	6260	16961	17050	25539	25539					-0.014640874614769928
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	HCT116MG_D190212_S2	2	1166.56884765625	1	1166.56879	1165.56152	0.57381	0.00066939	-0.14583	-0.00017012	0.42798	0.00049927	1166.56854243342	45.167	0.26118	45.075	44.943	45.205	-0.092472					6	4	2	0	0	0	6.9376E-07	1	17186	17186		179.28	115.32	1	14393000			26600	6260	16961	17050	25540	25540					-0.014640874614769928
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	HCT116MG_D190212_S3	3	583.7881469726562	2	583.788035	1165.56152	0.47379	0.0002766	0.040552	2.3674E-05	0.51435	0.00030027	583.7879948418031	45.301	0.31324	44.991	44.836	45.149	-0.31006					14	5	3	0	0	0	0.012422	1	16958	16958		135.86	86.309	1	19009000			26601	6260	16961	17050	25541	25541					-0.014640874614769928
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	HCT116MG_D190212_S4	4	584.290771484375	2	583.788035	1165.56152	0.36073	0.00021059	0.20432	0.00011928	0.56505	0.00032987	583.7881322164752	45.382	0.31131	45.009	44.832	45.143	-0.37265					13	5	3	0	0	0	0.0038737	1	16736	16736		143.91	103.96	1	12722000			26602	6260	16961	17050	25542	25542					-0.014640874614769928
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1166.56879	1165.56152	0.59803	0.00069764	-0.085152	-9.9335E-05	0.51288	0.00059831	1166.570107654327	45.061	0.20803	45.061	44.931	45.139	0	-0.007175	5.9646E-05	NaN	179.28	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10480000			26603	6260	16961	17050							-0.014640874614769928
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	HCT116MG_D190212_S1	1	569.31103515625	2	569.311146	1136.60774	0.28201	0.00016055	0.058813	3.3483E-05	0.34082	0.00019403	569.3111545304668	31.921	0.31308	31.921	31.753	32.066	0					9	5	2	0	0	0	3.7762E-08	1	11755	11755		226.55	96.779	1	19686000			26604	5347	16962	17051	25543	25543					0.04489977440630355
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	HCT116MG_D190212_S2	2	569.311767578125	2	569.311146	1136.60774	0.42619	0.00024264	0.35037	0.00019947	0.77657	0.00044211	569.3113255418141	32.199	0.36372	31.969	31.787	32.15	-0.23009					10	6	2	0	0	0	0.0015154	1	11906	11906		189.73	89.976	1	192530000			26605	5347	16962	17051	25544	25544					0.04489977440630355
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	HCT116MG_D190212_S2	2	379.8766174316406	3	379.876523	1136.60774	-0.13539	-5.1431E-05	0.48131	0.00018284	0.34592	0.00013141	379.87662982647134	32.199	0.31174	31.969	31.787	32.098	-0.23009					11	5	3	0	0	0	0.20983	1	11909	11909		31.636	3.4021	1	58905000			26606	5347	16962	17051	25545	25545					0.04489977440630355
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	HCT116MG_D190212_S3	3	569.3114013671875	2	569.311146	1136.60774	0.3204	0.00018241	-0.28345	-0.00016137	0.036949	2.1036E-05	569.3112362865969	32.222	0.4683	31.943	31.682	32.15	-0.27841					16	8	3	0	0	0	0.0035631	1	11818	11818		173.69	94.958	1	28574000			26607	5347	16962	17051	25546	25546					0.04489977440630355
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	HCT116MG_D190212_S3	3	379.8763122558594	3	379.876523	1136.60774	-0.20408	-7.7525E-05	0.25423	9.6577E-05	0.050155	1.9053E-05	379.87646323181343	32.274	0.2603	31.996	31.838	32.098	-0.27841					10	4	3	0	0	0	0.1535	1	11838	11838		37.771	11.751	1	8228900			26608	5347	16962	17051	25547	25547					0.04489977440630355
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	HCT116MG_D190212_S4	4	569.310791015625	2	569.311146	1136.60774	0.4532	0.00025801	-0.15956	-9.0837E-05	0.29364	0.00016717	569.3110107427102	32.406	0.20752	32.027	31.897	32.105	-0.37924					6	3	2	0	0	0	0.016412	1	11814	11814		100.09	35.854	1	8817800			26609	5347	16962	17051	25548	25548					0.04489977440630355
QTDLTFYD	8	Unmodified	_QTDLTFYD_					0	0	0			REV__PCDHA13|p.A182T|1|0.3|ENSG00000239389|chr5:140882812-140882812|G/A|missense_variant	REV__PCDHA13|p.A182T|1|0.3|ENSG00000239389|chr5:140882812-140882812|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1003.4479370117188	1	1002.44147	1001.43419	0.75917	0.00076102	0.7399	0.00074171	1.4991	0.0015027	1002.4422912976183	48.981	0.31748	48.665	48.552	48.87	-0.31596					8	5	2	0	0	0	0.51336	1	18457	18457		39.957	5.8549	1	5563100	+		26610	17388	16963	17052	25549	25549					-0.06646808335665355
QTDNKKAITY	10	Unmodified	_QTDNKKAITY_					0	0	0		ENST00000466729.5_1_17:15903657-15905979:+|nuORF;ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19	ENST00000466729.5_1_17:15903657-15905979:+|nuORF	ENST00000466729.5_1_17:15903657-15905979:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	591.3120727539062	2	591.311677	1180.6088	0.62735	0.00037096	-0.16158	-9.5545E-05	0.46576	0.00027541	591.3115692629316	21.667	0.26051	21.667	21.489	21.75	0					9	4	3	0	0	0	0.023242	1	7636	7636		114.5	64.564	1	28029000			26611	891	16964	17053	25550	25550					0.025721918095314322
QTDNKKAITY	10	Unmodified	_QTDNKKAITY_					0	0	0		ENST00000466729.5_1_17:15903657-15905979:+|nuORF;ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19	ENST00000466729.5_1_17:15903657-15905979:+|nuORF	ENST00000466729.5_1_17:15903657-15905979:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	591.3118896484375	2	591.311677	1180.6088	0.70806	0.00041868	-0.021432	-1.2673E-05	0.68662	0.00040601	591.3115104219803	22.203	0.26006	21.818	21.687	21.947	-0.3852					13	4	4	0	0	0	0.0011309	1	7857	7857		177.58	135.74	1	80754000			26612	891	16964	17053	25551	25551					0.025721918095314322
QTDNKKAITY	10	Unmodified	_QTDNKKAITY_					0	0	0		ENST00000466729.5_1_17:15903657-15905979:+|nuORF;ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19	ENST00000466729.5_1_17:15903657-15905979:+|nuORF	ENST00000466729.5_1_17:15903657-15905979:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	394.54345703125	3	394.543544	1180.6088	0.1547	6.1035E-05	-0.37382	-0.00014749	-0.21912	-8.6452E-05	394.54343878246556	22.203	0.26006	21.818	21.687	21.947	-0.3852					9	4	3	0	0	0	0.54524	1	7877	7877		23.016	11.384	1	20610000			26613	891	16964	17053	25552	25552					0.025721918095314322
QTDNKKAITY	10	Unmodified	_QTDNKKAITY_					0	0	0		ENST00000466729.5_1_17:15903657-15905979:+|nuORF;ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19	ENST00000466729.5_1_17:15903657-15905979:+|nuORF	ENST00000466729.5_1_17:15903657-15905979:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	394.543544	1180.6088	-0.099889	-3.9411E-05	-0.28334	-0.00011179	-0.38323	-0.0001512	394.5433445071486	21.672	0.26051	21.672	21.489	21.75	0	-0.072838	4.9438E-05	NaN	23.016	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10949000			26614	891	16964	17053							0.025721918095314322
QTDNQSRLQRY	11	Unmodified	_QTDNQSRLQRY_					0	0	0		NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	704.8505859375	2	704.850021	1407.68549	0.7691	0.0005421	0.11217	7.9065E-05	0.88127	0.00062117	705.3514594069088	21.682	0.20761	21.297	21.167	21.375	-0.38503					8	3	3	0	0	0	0.025528	1	7658	7658		128.58	97.31	1	15099000			26615	1215	16965	17054	25553	25553					-0.002046166412810635
QTDNQSRLQRY	11	Unmodified	_QTDNQSRLQRY_					0	0	0		NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	NUP133|p.F1142Lfs*3|1|0.35|ENSG00000069248|chr1:229441949-229441949|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	704.850021	1407.68549	0.85146	0.00060015	-1.0572	-0.00074516	-0.20573	-0.00014501	704.8487147745789	21.093	0.32032	21.093	20.852	21.173	0	-0.10171	-0.0015686	NaN	128.58	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3259300			26616	1215	16965	17054							-0.002046166412810635
QTDPANCDY	9	Unmodified	_QTDPANCDY_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	MULTI-MSMS	HCT116MG_D190212_S3	3	1026.3836669921875	1	1026.3833	1025.37602	0.57249	0.0005876	-0.023703	-2.4328E-05	0.54879	0.00056327	1026.3830320781447	28.025	0.36456	27.837	27.621	27.985	-0.18847					11	6	2	0	0	0	3.7762E-08	1	10102	10102		226.55	165.19	1	4353700			26617	1970	16966	17055	25554	25554					-0.13564813252605745
QTDPTLLSV	9	Unmodified	_QTDPTLLSV_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	HCT116MG_D190212_S1	1	973.5191040039062	1	973.520053	972.512776	0.58448	0.000569	0.29593	0.0002881	0.88041	0.00085709	973.519991308836	49.182	0.20727	49.182	49.079	49.286	0					7	3	3	0	0	0	0.01405	1	18754	18754		103.35	38.118	1	19547000			26618	3890	16967	17056	25555	25555					0.02542043969435781
QTDPTLLSV	9	Unmodified	_QTDPTLLSV_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	HCT116MG_D190212_S2	2	973.5208129882812	1	973.520053	972.512776	0.51541	0.00050176	0.40363	0.00039294	0.91904	0.00089471	973.5200473855174	49.302	0.25306	49.148	49.036	49.289	-0.15406					7	4	2	0	0	0	0.0053819	1	18873	18873		134.3	48.654	1	84638000			26619	3890	16967	17056	25556	25556					0.02542043969435781
QTDPTLLSV	9	Unmodified	_QTDPTLLSV_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	HCT116MG_D190212_S3	3	973.5201416015625	1	973.520053	972.512776	0.40268	0.00039201	-0.11318	-0.00011018	0.2895	0.00028183	973.519917495934	49.526	0.31399	49.21	49.027	49.341	-0.31596					7	5	2	0	0	0	0.0062667	1	18679	18679		126.57	47.838	1	5563500			26620	3890	16967	17056	25557	25557					0.02542043969435781
QTDPVTLQY	9	Unmodified	_QTDPVTLQY_					0	0	0		HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	533.4188842773438	2	532.766571	1063.51859	0.40698	0.00021682	-0.66974	-0.00035681	-0.26276	-0.00013999	532.7666020528748	41.963	0.30048	41.66	41.48	41.781	-0.30257					12	5	3	0	0	0	0.55223	1	15562	15562		13.906	0	1	2544400			26621	3087	16968	17057	25558	25558					-0.010628575188775358
QTDPVTLQY	9	Unmodified	_QTDPVTLQY_					0	0	0		HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	532.766571	1063.51859	0.58654	0.00031249	-0.19285	-0.00010274	0.39369	0.00020975	532.7665392202007	41.695	0.25831	41.627	41.498	41.756	-0.068199	-0.016604	8.7446E-05	NaN	13.906	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7838700			26622	3087	16968	17057							-0.010628575188775358
QTDPVTLQY	9	Unmodified	_QTDPVTLQY_					0	0	0		HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant;nc|ENSG00000130589|Q9BYK8-2|HELZ2;HELZ2|p.R2206Vfs*29|2|0.28|ENSG00000130589|chr20:63561898-63561898|G/-|frameshift_variant;HELZ2|p.G2213Vfs*22|1|0.14|ENSG00000130589|chr20:63561876-63561876|C/-|frameshift_variant;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	532.766571	1063.51859	0.40698	0.00021682	-0.66974	-0.00035681	-0.26276	-0.00013999	532.7666020528748	41.963	0.30048	41.66	41.48	41.781	-0.30257	0.016604	-0.00042069	NaN	13.906	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2544400			26623	3087	16968	17057							-0.010628575188775358
QTDQMVFN	8	Unmodified	_QTDQMVFN_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	982.4307861328125	1	982.429858	981.422581	0.59988	0.00058934	-0.027398	-2.6917E-05	0.57248	0.00056242	982.4297668218244	38.251	0.25893	38.158	37.96	38.219	-0.09301					7	4	2	0	0	0	0.043218	1	14370	14370		131.27	78.999	1	18091000			26624	3985	16969	17058	25559	25559					-0.06887328630637057
QTDQMVFNAY	10	Unmodified	_QTDQMVFNAY_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	608.7693481445312	2	608.768788	1215.52302	0.56596	0.00034454	0.076899	4.6814E-05	0.64286	0.00039136	608.7688834992034	46.725	0.25963	46.725	46.595	46.855	0					7	4	2	0	0	0	0.023406	1	17763	17763		114.2	87.934	1	19930000			26625	3985	16970	17059	25560	25560					-0.07611716367614463
QTDQMVFNAY	10	Unmodified	_QTDQMVFNAY_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	608.7695922851562	2	608.768788	1215.52302	1.0654	0.00064859	-0.34694	-0.00021121	0.71847	0.00043738	608.7686875086337	46.814	0.3085	46.703	46.522	46.831	-0.11121					12	5	3	0	0	0	0.021434	1	17844	17844		117.76	88.679	1	37630000			26626	3985	16970	17059	25561	25561					-0.07611716367614463
QTDQMVFNAY	10	Unmodified	_QTDQMVFNAY_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1216.5303955078125	1	1216.5303	1215.52302	0.99615	0.0012118	-0.71526	-0.00087014	0.28089	0.00034171	1216.5294951416713	46.814	0.25697	46.703	46.574	46.831	-0.11121					7	4	2	0	0	0	0.01069	1	17875	17875		145.13	112.82	1	23052000			26627	3985	16970	17059	25562	25562					-0.07611716367614463
QTDQMVFNAY	10	Unmodified	_QTDQMVFNAY_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	608.76953125	2	608.768788	1215.52302	0.5035	0.00030652	0.21485	0.00013079	0.71835	0.00043731	608.7690034751126	47.064	0.31279	46.75	46.542	46.855	-0.31405					14	5	3	0	0	0	0.021434	1	17657	17657		117.76	79.585	1	10743000			26628	3985	16970	17059	25563	25563					-0.07611716367614463
QTDQMVFNAY	10	Unmodified	_QTDQMVFNAY_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1216.5303	1215.52302	0.63652	0.00077434	0.73243	0.00089102	1.3689	0.0016654	1216.5292001227733	47.038	0.20853	46.724	46.594	46.802	-0.31405	0.010752	0.0016198	NaN	145.13	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2405300			26629	3985	16970	17059							-0.07611716367614463
QTDQMVFNAY	10	Unmodified	_QTDQMVFNAY_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	608.768788	1215.52302	1.0971	0.00066788	-0.59305	-0.00036103	0.50405	0.00030685	608.7684099760775	47.057	0.2075	46.687	46.589	46.796	-0.37038	-0.029404	-0.00066479	NaN	117.76	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1632000			26630	3985	16970	17059							-0.07611716367614463
QTDQRVLRH	9	Unmodified	_QTDQRVLRH_					0	0	0		SGSM3|p.T283Rfs*42|1|0.12|ENSG00000100359|chr22:40406111-40406111|C/-|frameshift_variant;ENST00000478085.5_1_22:40800171-40802852:+|nuORF;ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3	SGSM3|p.T283Rfs*42|1|0.12|ENSG00000100359|chr22:40406111-40406111|C/-|frameshift_variant	SGSM3|p.T283Rfs*42|1|0.12|ENSG00000100359|chr22:40406111-40406111|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	576.8155517578125	2	576.815253	1151.61595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.548	1	16.207	15.707	16.707	-0.34183								0	0	0	0.063593	1	5576	5576		66.457	39.573	1				26631	1697	16971	17060	25564	25564					0.046209692006414116
QTDRANRFEY	10	Unmodified	_QTDRANRFEY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	HCT116MG_D190212_S2	2	650.8086547851562	2	650.307458	1298.60036	0.6374	0.00041451	0.10189	6.6259E-05	0.73929	0.00048077	650.3075857861616	28.023	0.25873	27.693	27.563	27.822	-0.32987					11	4	3	0	0	0	0.0040532	1	10222	10222		169.92	131.75	1	47744000			26632	4176	16972	17061	25565	25565					-0.03699362107090565
QTDRANRFEY	10	Unmodified	_QTDRANRFEY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	HCT116MG_D190212_S2	2	433.8740539550781	3	433.874064	1298.60036	0.02055	8.9163E-06	0.44914	0.00019487	0.46969	0.00020378	433.8742051794305	28.023	0.20707	27.693	27.563	27.77	-0.32987					8	3	3	0	0	0	0.019431	1	10231	10231		107.51	83.713	1	20520000			26633	4176	16972	17061	25566	25566					-0.03699362107090565
QTDSCNCDCLT	11	Unmodified	_QTDSCNCDCLT_					0	0	0			REV__ENST00000548269.1_1_12:53587490-53588125:-|nuORF	REV__ENST00000548269.1_1_12:53587490-53588125:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	601.7088623046875	2	601.709756	1201.40496	0.45417	0.00027328	-2.901	-0.0017456	-2.4469	-0.0014723	601.7081162575354	21.201	0.20881	21.22	21.115	21.323	0.018446					8	3	3	0	0	0	0.55672	1	7392	7392		40.239	20.982	1	3826600	+		26634	12267	16973	17062	25567	25567					-0.1876878001012301
QTEATQEKY	9	Unmodified	_QTEATQEKY_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	MULTI-MSMS	HCT116MG_D190212_S1	1	549.2593383789062	2	549.259111	1096.50367	0.40891	0.0002246	0.27343	0.00015018	0.68234	0.00037478	549.2591982526418	18.949	0.20861	18.949	18.819	19.027	0					8	3	3	0	0	0	0.0034297	1	6553	6553		159.1	88.769	1	5561700			26635	1551	16974	17063	25568	25568					-0.04072349386888163
QTEATQEKY	9	Unmodified	_QTEATQEKY_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2589111328125	2	549.259111	1096.50367	0.41119	0.00022585	-0.048366	-2.6565E-05	0.36282	0.00019928	549.2588187367306	19.433	0.25994	19.063	18.94	19.2	-0.3695					10	4	3	0	0	0	0.025331	1	6763	6763		91.085	33.363	1	10221000			26636	1551	16974	17063	25569	25569					-0.04072349386888163
QTEATQEKY	9	Unmodified	_QTEATQEKY_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	MULTI-MSMS	HCT116MG_D190212_S3	3	549.2592163085938	2	549.259111	1096.50367	0.41875	0.00023	0.18036	9.9066E-05	0.59911	0.00032907	549.2590840384737	18.629	0.20809	18.698	18.563	18.771	0.069159					8	3	3	0	0	0	0.0035136	1	6340	6340		168.54	95.57	1	6605100			26637	1551	16974	17063	25570	25570					-0.04072349386888163
QTEDNMLFY	9	Unmodified	_QTEDNMLFY_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	HCT116MG_D190212_S2	2	580.7506103515625	2	580.750064	1159.48558	0.39843	0.00023139	0.52237	0.00030337	0.9208	0.00053476	580.7503268185377	54.012	0.25729	53.823	53.687	53.945	-0.1894					11	4	3	0	0	0	0.031089	2	20801	20738;20801		85.272	49.145	1	13891000			26638	3719	16975	17064	25571;25572	25572					-0.08778807633257202
QTEDNMLFY	9	Unmodified	_QTEDNMLFY_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	HCT116MG_D190212_S3	3	580.750244140625	2	580.750064	1159.48558	0.38191	0.0002218	0.10904	6.3328E-05	0.49096	0.00028512	580.7499775136044	54.147	0.36544	53.847	53.665	54.03	-0.29946					14	6	3	0	0	0	0.0038833	1	20512	20512		152.41	100.78	1	15287000			26639	3719	16975	17064	25573	25573					-0.08778807633257202
QTEDNMLFY	9	Unmodified	_QTEDNMLFY_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	HCT116MG_D190212_S3	3	1160.493896484375	1	1160.49285	1159.48558	0.41859	0.00048577	0.1357	0.00015748	0.55429	0.00064325	1160.4933164108254	54.16	0.20898	53.861	53.716	53.925	-0.29946					6	3	2	0	0	0	0.049545	1	20538	20538		74.929	54.475	1	3455100			26640	3719	16975	17064	25574	25574					-0.08778807633257202
QTEDNMLFY	9	Unmodified	_QTEDNMLFY_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	580.750064	1159.48558	0.30325	0.00017611	-0.25829	-0.00015	0.044967	2.6114E-05	580.7498571710339	54.177	0.26054	53.848	53.665	53.926	-0.32923	0.0085307	-0.00033684	NaN	152.41	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4316800			26641	3719	16975	17064							-0.08778807633257202
QTEDNMLFY	9	Oxidation (M)	_QTEDNM(Oxidation (M))LFY_		QTEDNM(1)LFY		QTEDNM(85)LFY	0	0	1		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MSMS	HCT116MG_D190212_S3	3	588.7479858398438	2	588.747521	1175.48049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.897	1	46.583	46.083	47.083	-0.31405								0	0	0	0.027064	1	17596	17596		85.272	53.155	1				26642	3719	16975	17065	25575	25575		84			-0.1002311149588877
QTEDNMLFY	9	Oxidation (M)	_QTEDNM(Oxidation (M))LFY_		QTEDNM(1)LFY		QTEDNM(48)LFY	0	0	1		ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	HCT116MG_D190212_S4	4	588.747802734375	2	588.747521	1175.48049	0.7285	0.0004289	-0.24696	-0.0001454	0.48153	0.0002835	588.7473277127829	46.894	0.31124	46.522	46.381	46.692	-0.37111					9	5	2	0	0	0	0.15273	1	17353	17353		47.749	28.492	1	3799000			26643	3719	16975	17065	25576	25576		84			-0.1002311149588877
QTEERVQPEY	10	Unmodified	_QTEERVQPEY_					0	0	0		RGP1|p.G277Vfs*8|1|0.43|ENSG00000107185|chr9:35752019-35752019|G/-|frameshift_variant;ENST00000496906.1_1_9:35750742-35753913:+|nuORF;ENSG00000107185|ENST00000378078|RGP1	RGP1|p.G277Vfs*8|1|0.43|ENSG00000107185|chr9:35752019-35752019|G/-|frameshift_variant	RGP1|p.G277Vfs*8|1|0.43|ENSG00000107185|chr9:35752019-35752019|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	639.8021240234375	2	639.801674	1277.58879	0.79786	0.00051047	-0.20685	-0.00013234	0.59101	0.00037813	639.8015587565727	25.937	0.3135	25.937	25.77	26.084	0					8	5	2	0	0	0	0.0095435	1	9348	9348		151.48	95.977	1	7222800			26644	2105	16976	17066	25577	25577					-0.03889603921084017
QTEERVQPEY	10	Unmodified	_QTEERVQPEY_					0	0	0		RGP1|p.G277Vfs*8|1|0.43|ENSG00000107185|chr9:35752019-35752019|G/-|frameshift_variant;ENST00000496906.1_1_9:35750742-35753913:+|nuORF;ENSG00000107185|ENST00000378078|RGP1	RGP1|p.G277Vfs*8|1|0.43|ENSG00000107185|chr9:35752019-35752019|G/-|frameshift_variant	RGP1|p.G277Vfs*8|1|0.43|ENSG00000107185|chr9:35752019-35752019|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	639.8028564453125	2	639.801674	1277.58879	0.62078	0.00039718	0.28814	0.00018435	0.90892	0.00058153	639.8017055524028	26.308	0.25837	25.946	25.766	26.024	-0.36164					7	4	2	0	0	0	0.14359	1	9543	9543		65.474	32.029	1	12033000			26645	2105	16976	17066	25578	25578					-0.03889603921084017
QTEKNEQPWRN	11	Unmodified	_QTEKNEQPWRN_					0	0	0			REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF	REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	477.232177734375	3	477.23214	1428.67459	0.25027	0.00011944	-0.1457	-6.9533E-05	0.10457	4.9906E-05	477.23194189401244	17.093	0.46857	16.743	16.509	16.978	-0.34933					19	8	3	0	0	0	0.71498	1	5793	5793		16.275	0	1	20776000	+		26646	12527	16977	17067	25579	25579					-0.022600190156026656
QTEKNEQPWRN	11	Unmodified	_QTEKNEQPWRN_					0	0	0			REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF	REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	477.23214	1428.67459	0.25027	0.00011944	-0.1457	-6.9533E-05	0.10457	4.9906E-05	477.23194189401244	17.093	0.46857	16.743	16.509	16.978	-0.34933	0.082379	-0.00014662	NaN	16.275	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20776000	+		26647	12527	16977	17067							-0.022600190156026656
QTEKPTHYRY	10	Unmodified	_QTEKPTHYRY_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	MULTI-MSMS	HCT116MG_D190212_S3	3	441.88873291015625	3	441.554443	1321.6415	-0.13815	-6.1001E-05	0.31872	0.00014073	0.18057	7.973E-05	441.88892290864334	17.686	0.20825	17.768	17.638	17.846	0.081358					5	3	2	0	0	0	0.8224	1	5977	5977		6.2344	2.6417	1	1576900			26648	9373	16978	17068	25580	25580					-0.006456010676174628
QTEKQRIIWGY	11	Unmodified	_QTEKQRIIWGY_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MSMS	HCT116MG_D190212_S1	1	711.37939453125	2	711.380426	1420.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.205	1	41.205	40.705	41.705	0								0	0	0	0.81687	1	15509	15509		30.703	16.797	1				26649	3428	16979	17069	25581	25581					0.052755204089407925
QTEKQRIIWGY	11	Unmodified	_QTEKQRIIWGY_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	HCT116MG_D190212_S2	2	711.3811645507812	2	711.380426	1420.7463	0.95048	0.00067616	0.71112	0.00050588	1.6616	0.001182	711.3810595154536	41.045	0.25884	40.975	40.829	41.088	-0.069164					10	4	3	0	0	0	7.6425E-11	1	15516	15516		214.05	164.5	1	26019000			26650	3428	16979	17069	25582	25582					0.052755204089407925
QTERDSATAY	10	Unmodified	_QTERDSATAY_					0	0	0		ENST00000480630.5_1_1:40430901-40433516:+|nuORF;ENST00000483824.5_1_1:40420832-40434017:+|nuORF;nc|ENSG00000168389|Q8NA29-3|MFSD2A;ENSG00000168389|ENST00000372811|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A	ENST00000480630.5_1_1:40430901-40433516:+|nuORF	ENST00000480630.5_1_1:40430901-40433516:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	571.259765625	2	571.259642	1140.50473	0.33598	0.00019193	-0.04345	-2.4821E-05	0.29253	0.00016711	571.2598022998754	20.391	0.36931	20.011	19.761	20.13	-0.37949					8	6	2	0	0	0	0.072876	1	7150	7150		79.427	24.653	1	6452500			26651	5005	16980	17070	25583	25583					-0.059901350180098234
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	577.2755737304688	2	576.785827	1151.5571	0.46207	0.00026651	0.082301	4.747E-05	0.54437	0.00031398	576.7858111812317	26.579	0.41649	26.579	26.397	26.813	0					15	7	3	0	0	0	7.9226E-08	2	9595	9595;9611		216.57	139.74	1	83543000			26652	222	16981	17071	25584;25585	25584					-0.012615518843858808
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	576.7860107421875	2	576.785827	1151.5571	0.38805	0.00022382	-0.025689	-1.4817E-05	0.36237	0.00020901	576.7858360970549	26.984	0.52629	26.631	26.396	26.923	-0.35254					27	9	4	0	0	0	7.9226E-08	2	9764	9755;9764		216.57	130.23	1	242450000			26653	222	16981	17071	25586;25587	25587					-0.012615518843858808
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1152.563720703125	1	1152.56438	1151.5571	0.46796	0.00053935	-0.23246	-0.00026792	0.2355	0.00027143	1152.5640332728642	26.932	0.26297	26.579	26.45	26.713	-0.35254					7	4	2	0	0	0	6.9263E-21	1	9798	9798		284.04	208.28	1	11973000			26654	222	16981	17071	25588	25588					-0.012615518843858808
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	576.785888671875	2	576.785827	1151.5571	0.51585	0.00029753	-0.072562	-4.1853E-05	0.44328	0.00025568	576.7857655603068	26.846	0.52089	26.697	26.515	27.036	-0.14924					15	9	2	0	0	0	0.00086357	1	9631	9631		193.29	116.47	1	133080000			26655	222	16981	17071	25589	25589					-0.012615518843858808
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant;ATP13A3|p.V1108Cfs*23|1|0.26|ENSG00000133657|chr3:194419959-194419960|-/A|frameshift_variant;ATP13A3|p.S1110Ffs*21|2|0.22|ENSG00000133657|chr3:194419952-194419953|-/A|frameshift_variant;ATP13A3|p.L1114Ffs*17|1|0.25|ENSG00000133657|chr3:194419939-194419940|-/A|frameshift_variant;ATP13A3|p.L1114Yfs*22|1|0.23|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ATP13A3|p.P1198Lfs*19|1|0.04|ENSG00000133657|chr3:194406007-194406008|-/ATATAGTA|frameshift_variant;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.I476Sfs*11|1|0.19|ENSG00000133657|chr3:194446998-194446998|T/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	ATP13A3|p.F1107Lfs*5|1|0.42|ENSG00000133657|chr3:194419960-194419960|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	576.7862548828125	2	576.785827	1151.5571	0.4118	0.00023752	-0.26321	-0.00015182	0.14859	8.5706E-05	576.7858524927146	27.028	0.72753	26.716	26.171	26.899	-0.3114					21	13	3	0	0	0	1.3589E-08	1	9659	9659		232.37	146.04	1	34088000			26656	222	16981	17071	25590	25590					-0.012615518843858808
QTETQQRDY	9	Unmodified	_QTETQQRDY_					0	0	0		CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant;ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;CEP295|p.S1014Yfs*28|1|0.44|ENSG00000166004|chr11:93697948-93697957|AAAATCTGGA/-|frameshift_variant;CEP295|p.F1469Yfs*47|1|0.31|ENSG00000166004|chr11:93699317-93699318|-/ATCCAGCC|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	CEP295|p.L2479Ffs*6|1|0.29|ENSG00000166004|chr11:93729651-93729651|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	584.765380859375	2	584.765091	1167.51563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.874	1	17.874	17.374	18.374	0								0	0	0	0.43211	1	6110	6110		32.037	17.199	1				26657	408	16982	17072	25591	25591					-0.061427326437069496
QTGIQNKTQM	10	Unmodified	_QTGIQNKTQM_					0	0	0		ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B	ENSG00000182415|ENST00000250838|CDY2A	ENSG00000182415|ENST00000250838|CDY2A	MSMS	HCT116MG_D190212_S1	1	574.7366333007812	2	574.790055	1147.56556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.345	1	34.345	33.845	34.845	0								0	0	0	0.91279	1	12740	12740		13.042	0.80181	1				26658	3046	16983	17073	25592	25592					-0.0023232123942307226
QTGRPVGVHS	10	Unmodified	_QTGRPVGVHS_					0	0	0			REV__ENST00000582100.1_2_17:80062897-80064212:-|nuORF	REV__ENST00000582100.1_2_17:80062897-80064212:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.8006591796875	2	519.277972	1036.54139	0.3002	0.00015589	-0.10673	-5.5424E-05	0.19347	0.00010046	519.2777817461841	16.728	0.31252	16.386	16.204	16.516	-0.34183					7	5	2	0	0	0	0.29174	1	5631	5631		13.615	13.615	1	8227600	+		26659	16628	16984	17074	25593	25593					0.024582063892466977
QTGVIIQPQQI	11	Unmodified	_QTGVIIQPQQI_					0	0	0		nc|ENSG00000165417|P52655-2|GTF2A1;ENST00000298173.7_1_14:81646569-81676264:-|nuORF;ENSG00000165417|ENST00000553612|GTF2A1	nc|ENSG00000165417|P52655-2|GTF2A1	nc|ENSG00000165417|P52655-2|GTF2A1	MSMS	HCT116MG_D190212_S1	1	612.8509521484375	2	612.85097	1223.68739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.123	1	53.123	52.623	53.623	0								0	0	0	0.95343	1	20337	20337		4.5289	0	1				26660	4773	16985	17075	25594	25594					0.08449044114627213
QTHSPQHWEQP	11	Unmodified	_QTHSPQHWEQP_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MSMS	HCT116MG_D190212_S2	2	687.8113403320312	2	687.812907	1373.61126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.686	1	18.323	17.823	18.823	-0.36325								0	0	0	0.94269	1	6437	6437		10.151	4.4187	1				26661	2881	16986	17076	25595	25595					-0.060599597328291566
QTIENATDIWQ	11	Unmodified	_QTIENATDIWQ_					0	0	0		ENSG00000065325|ENST00000262441|GLP2R;ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENSG00000065325|ENST00000262441|GLP2R	ENSG00000065325|ENST00000262441|GLP2R	MULTI-SECPEP	HCT116MG_D190212_S3	3	660.3571166992188	2	659.817324	1317.62009	0.80623	0.00053197	0.42468	0.00028021	1.2309	0.00081218	659.8173569425576	25.18	0.78094	25.074	24.683	25.464	-0.10618					21	14	2	0	0	0	0.3621	1	8969	8969		6.6304	0	1	7189100			26662	1155	16987	17077	25596	25596					-0.02601030887012712
QTIGQIFIEKL	11	Unmodified	_QTIGQIFIEKL_					0	0	0		OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant;OTOGL|p.K2146Nfs*40|2|0.16|ENSG00000165899|chr12:80367724-80367724|A/-|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	645.3763427734375	2	645.37682	1288.73909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.485	1	37.382	36.882	37.882	-0.10318								0	0	0	0.94851	1	14052	14052		7.1017	1.8048	1				26663	4807	16988	17078	25597	25597					0.10626787808496374
QTIRTRERKRR	11	Unmodified	_QTIRTRERKRR_					0	0	0		ENST00000343004.9_1_X:133931066-133931180:-|nuORF	ENST00000343004.9_1_X:133931066-133931180:-|nuORF	ENST00000343004.9_1_X:133931066-133931180:-|nuORF	MSMS	HCT116MG_D190212_S1	1	750.4537353515625	2	750.453114	1498.89167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.247	1	59.247	58.747	59.747	0								0	0	0	0.96208	1	22835	22835		0	0	1				26664	7240	16989	17079	25598	25598					0.16218421048461096
QTLFRTQII	9	Unmodified	_QTLFRTQII_					0	0	0		ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	MSMS	HCT116MG_D190212_S1	1	560.3278198242188	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.704	1	46.704	46.204	47.204	0								0	0	0	0.67173	1	17727	17727		20.454	6.5476	1				26665	5295	16990	17080	25599	25599					0.09021693777049222
QTLIYILFFFV	11	Unmodified	_QTLIYILFFFV_					0	0	0			REV__ENSG00000169208|ENST00000641040|OR10G3	REV__ENSG00000169208|ENST00000641040|OR10G3	MSMS	HCT116MG_D190212_S2	2	702.4037475585938	2	702.402307	1402.79006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.468	1	53.279	52.779	53.779	-0.1894								0	0	0	0.85129	1	20563	20563		26.268	0	1		+		26666	13230	16991	17081	25600	25600					0.1047773685336324
QTLPPLCKSF	10	Unmodified	_QTLPPLCKSF_					0	0	0			REV__ENSG00000160838|ENST00000337428|LRRC71	REV__ENSG00000160838|ENST00000337428|LRRC71	MULTI-SECPEP	HCT116MG_D190212_S2	2	567.2437744140625	2	567.30481	1132.59507	0.83801	0.00047541	-0.20691	-0.00011738	0.6311	0.00035803	567.8063020412086	35.966	0.30967	35.838	35.658	35.967	-0.12799					6	5	2	0	0	0	0.3083	1	13381	13381		0.96228	0	1	14101000	+		26667	12846	16992	17082	25601	25601					0.03407242776711428
QTLPPLCKSF	10	Unmodified	_QTLPPLCKSF_					0	0	0			REV__ENSG00000160838|ENST00000337428|LRRC71	REV__ENSG00000160838|ENST00000337428|LRRC71	MULTI-MATCH	HCT116MG_D190212_S1	1		2	567.30481	1132.59507	0.48302	0.00027402	-0.38923	-0.00022081	0.093787	5.3206E-05	567.3045001362274	35.863	0.31291	35.863	35.785	36.098	0	0.012735	-0.00011093	NaN	0.96228	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4426700	+		26668	12846	16992	17082							0.03407242776711428
QTLYDTAYLTL	11	Unmodified	_QTLYDTAYLTL_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MSMS	HCT116MG_D190212_S2	2	651.498046875	2	651.334818	1300.65508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.462	1	39.384	38.884	39.884	-0.077835								0	0	0	0.93295	1	14853	14853		15.248	1.3424	1				26669	1204	16993	17083	25602	25602					0.01678211920943795
QTLYSQAP	8	Unmodified	_QTLYSQAP_					0	0	0			REV__PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	REV__PTPN3|p.P658Afs*20|1|0.15|ENSG00000070159|chr9:109391544-109391545|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	454.2295837402344	2	454.229625	906.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.832	1	28.492	27.992	28.992	-0.34059								0	0	0	0.81076	1	10386	10386		21.747	1.293	1		+		26670	10750	16994	17084	25603	25603					-0.012267808905789934
QTNCCLPEG	9	Unmodified	_QTNCCLPEG_					0	0	0		ENSG00000180730|ENST00000319420|SHISA2	ENSG00000180730|ENST00000319420|SHISA2	ENSG00000180730|ENST00000319420|SHISA2	MULTI-MSMS	HCT116MG_D190212_S2	2	482.69696044921875	2	482.696777	963.379002	0.097112	4.6876E-05	0.41199	0.00019887	0.50911	0.00024574	482.69698615081774	20.271	0.36412	19.891	19.605	19.969	-0.37949					11	6	2	0	0	0	0.60612	1	7072	7072		10.824	0.64053	1	10798000			26671	5607	16995	17085	25604	25604					-0.10415261399430165
QTNEHLIRTY	10	Unmodified	_QTNEHLIRTY_					0	0	0			REV__MTHFD1L|p.D504Y|1|0.25|ENSG00000120254|chr6:150944555-150944555|G/T|missense_variant	REV__MTHFD1L|p.D504Y|1|0.25|ENSG00000120254|chr6:150944555-150944555|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	638.264892578125	2	637.828026	1273.6415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.682	1	32.397	31.897	32.897	-0.28511								0	0	0	0.92607	1	11987	11987		10.074	0	1		+		26672	17041	16996	17086	25605	25605					0.015623989324012655
QTNRGVLLDG	10	Unmodified	_QTNRGVLLDG_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-2|LAMB4	REV__nc|ENSG00000091128|A4D0S4-2|LAMB4	MSMS	HCT116MG_D190212_S3	3	358.1969909667969	3	358.196367	1071.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.327	1	56.043	55.543	56.543	-0.28367								0	0	0	0.96769	1	21381	21381		0.77653	0.14971	1		+		26673	10993	16997	17087	25606	25606					0.034350558408505094
QTPEVQLVLFV	11	Unmodified	_QTPEVQLVLFV_					0	0	0		ENSG00000274102|ENST00000614722|OR4M2;ENSG00000182974|ENST00000332663|OR4M2B	ENSG00000274102|ENST00000614722|OR4M2	ENSG00000274102|ENST00000614722|OR4M2	MSMS	HCT116MG_D190212_S2	2	636.86376953125	2	636.863546	1271.71254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.029	1	26.677	26.177	27.177	-0.35254								0	0	0	0.94145	1	9802	9802		10.8	1.4164	1				26674	5697	16998	17088	25607	25607					0.08755098917140458
QTPMYFFLGH	10	Unmodified	_QTPMYFFLGH_					0	0	0		OR5M10|p.N139Qfs*27|1|0.05|ENSG00000254834|chr11:56577307-56577308|-/TGTAGTTG|frameshift_variant;ENSG00000255012|ENST00000641076|OR5M1;ENSG00000254834|ENST00000526538|OR5M10	OR5M10|p.N139Qfs*27|1|0.05|ENSG00000254834|chr11:56577307-56577308|-/TGTAGTTG|frameshift_variant	OR5M10|p.N139Qfs*27|1|0.05|ENSG00000254834|chr11:56577307-56577308|-/TGTAGTTG|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	620.2152709960938	2	620.794609	1239.57467	0.25535	0.00015852	0.066066	4.1013E-05	0.32141	0.00019953	620.7945000385535	18.971	0.20898	18.601	18.471	18.68	-0.3695					5	3	2	0	0	0	0.30738	1	6503	6503		2.9952	2.7594	1	3339400			26675	6598	16999	17089	25608	25608					-0.035539278831038246
QTQAAPYPCH	10	Unmodified	_QTQAAPYPCH_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;ENST00000484268.1_1_7:48352666-48443694:+|nuORF	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MSMS	HCT116MG_D190212_S1	1	558.3499755859375	2	558.250566	1114.48658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.565	1	18.565	18.065	19.065	0								0	0	0	0.7978	1	6389	6389		29.082	2.1979	1				26676	5569	17000	17090	25609	25609					-0.06608548473718656
QTQVKRGP	8	Unmodified	_QTQVKRGP_					0	0	0			REV__ENSG00000157131|ENST00000361249|C8A	REV__ENSG00000157131|ENST00000361249|C8A	MULTI-MSMS	HCT116MG_D190212_S1	1	457.26416015625	2	457.264333	912.514114	0.17683	8.0857E-05	0.18191	8.3181E-05	0.35874	0.00016404	457.2642773177562	45.629	0.57599	45.629	45.399	45.975	0					16	10	2	0	0	0	0.85329	1	17303	17303		4.756	1.8668	1	7621200	+		26677	12745	17001	17091	25610	25610					0.05435722848858404
QTRAEEIEHYA	11	Unmodified	_QTRAEEIEHYA_					0	0	0		NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant	NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	449.5492248535156	3	449.549357	1345.62624	-0.20272	-9.1132E-05	0.062997	2.832E-05	-0.13972	-6.2812E-05	449.54942086710395	18.802	0.20775	18.439	18.269	18.477	-0.36325					9	3	4	0	0	0	0.70662	1	6490	6490		11.631	0.56609	1	21679000			26678	4127	17002	17092	25611	25611					-0.03274512655480066
QTREGRRGA	9	Unmodified	_QTREGRRGA_					0	0	0		ENST00000369980.7_2_X:153276977-153277313:-|nuORF	ENST00000369980.7_2_X:153276977-153277313:-|nuORF	ENST00000369980.7_2_X:153276977-153277313:-|nuORF	MSMS	HCT116MG_D190212_S4	4	515.7803344726562	2	515.778671	1029.54279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.615	1	36.23	35.73	36.73	-0.38486								0	0	0	0.71946	1	13406	13406		18.146	0.011366	1				26679	7419	17003	17093	25612	25612					0.029198404779890552
QTRMRREE	8	Unmodified	_QTRMRREE_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MSMS	HCT116MG_D190212_S3	3	369.1907653808594	3	369.189218	1104.54582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.33	1	54.034	53.534	54.534	-0.29587								0	0	0	0.8837	1	20584	20584		0.45834	0.057624	1		+		26680	10882	17004	17094	25613	25613					-0.0022665245949156088
QTSRDTTMY	9	Oxidation (M)	_QTSRDTTM(Oxidation (M))Y_		QTSRDTTM(1)Y		QTSRDTTM(79)Y	0	0	1		ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	HCT116MG_D190212_S1	1	559.7428588867188	2	559.74277	1117.47099	0.34003	0.00019033	-0.22158	-0.00012403	0.11844	6.6298E-05	559.7424628846544	18.619	0.36462	18.619	18.35	18.714	0					10	6	2	0	0	0	0.041798	1	6429	6429		78.728	48.092	1	2208300			26681	4791	17005	17095	25614	25614		104			-0.08304879781417185
QTSRDTTMY	9	Oxidation (M)	_QTSRDTTM(Oxidation (M))Y_		QTSRDTTM(1)Y		QTSRDTTM(60)Y	0	0	1		ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	HCT116MG_D190212_S2	2	559.742919921875	2	559.74277	1117.47099	0.31263	0.00017499	0.10591	5.928E-05	0.41853	0.00023427	559.7427957215249	19.115	0.26052	18.746	18.627	18.888	-0.3695					7	4	2	0	0	0	0.090581	1	6641	6641		60.074	31.587	1	7356600			26682	4791	17005	17095	25615	25615		104			-0.08304879781417185
QTSRDTTMY	9	Unmodified	_QTSRDTTMY_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	HCT116MG_D190212_S1	1	551.7461547851562	2	551.745313	1101.47607	0.608	0.00033546	0.28881	0.00015935	0.89681	0.00049481	551.7454572600315	24.296	0.26185	24.296	24.15	24.412	0					7	4	2	0	0	0	0.012596	1	8709	8709		106.94	76.304	1	8492500			26683	4791	17005	17096	25616	25616					-0.07060575918808354
QTSRDTTMY	9	Unmodified	_QTSRDTTMY_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	HCT116MG_D190212_S2	2	551.7455444335938	2	551.745313	1101.47607	0.40266	0.00022217	0.024527	1.3533E-05	0.42719	0.0002357	551.7452218039335	24.815	0.41529	24.44	24.296	24.712	-0.37521					11	7	2	0	0	0	0.0201	1	8925	8925		96.367	56.409	1	46208000			26684	4791	17005	17096	25617	25617					-0.07060575918808354
QTSRDTTMY	9	Unmodified	_QTSRDTTMY_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	HCT116MG_D190212_S3	3	551.7454833984375	2	551.745313	1101.47607	0.3149	0.00017374	0.21672	0.00011957	0.53161	0.00029331	551.7453737153701	24.316	0.25988	24.246	24.094	24.354	-0.070621					6	4	2	0	0	0	0.053544	1	8644	8644		72.968	40.662	1	4555900			26685	4791	17005	17096	25618	25618					-0.07060575918808354
QTSRHIRRR	9	Unmodified	_QTSRHIRRR_					0	0	0		KIF24|p.G740Rfs*43|1|0.1|ENSG00000186638|chr9:34257390-34257391|-/TT|frameshift_variant	KIF24|p.G740Rfs*43|1|0.1|ENSG00000186638|chr9:34257390-34257391|-/TT|frameshift_variant	KIF24|p.G740Rfs*43|1|0.1|ENSG00000186638|chr9:34257390-34257391|-/TT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	605.7904052734375	2	605.355411	1208.69627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.43	1	28.1	27.6	28.6	-0.32987								0	0	0	0.76849	1	10370	10370		6.2058	0.47393	1				26686	9264	17006	17097	25619	25619					0.10026875314315475
QTTKARRG	8	Unmodified	_QTTKARRG_					0	0	0			REV__TIAM1|p.Q528Rfs*36|1|0.37|ENSG00000156299|chr21:31245491-31245491|A/-|frameshift_variant	REV__TIAM1|p.Q528Rfs*36|1|0.37|ENSG00000156299|chr21:31245491-31245491|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	459.2676086425781	2	459.267407	916.520262	-0.017417	-7.9992E-06	0.33782	0.00015515	0.3204	0.00014715	459.2675377628084	44.097	0.89243	44.097	43.884	44.777	0					26	16	2	0	0	0	0.85329	1	16692	16692		4.756	0.81161	1	13086000	+		26687	12720	17007	17098	25620	25620					0.058662410803776766
QTTKARRG	8	Unmodified	_QTTKARRG_					0	0	0			REV__TIAM1|p.Q528Rfs*36|1|0.37|ENSG00000156299|chr21:31245491-31245491|A/-|frameshift_variant	REV__TIAM1|p.Q528Rfs*36|1|0.37|ENSG00000156299|chr21:31245491-31245491|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	459.267407	916.520262	-0.017417	-7.9992E-06	0.33782	0.00015515	0.3204	0.00014715	459.2675377628084	44.097	0.89243	44.097	43.884	44.777	0	0	0	NaN	4.756	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13086000	+		26688	12720	17007	17098							0.058662410803776766
QTTRPNRRRP	10	Unmodified	_QTTRPNRRRP_					0	0	0			REV__nc|ENSG00000149930|Q9UL54-3|TAOK2	REV__nc|ENSG00000149930|Q9UL54-3|TAOK2	MULTI-MSMS	HCT116MG_D190212_S2	2	428.2487487792969	3	427.913076	1280.7174	0.2588	0.00011075	-0.48316	-0.00020675	-0.22436	-9.6005E-05	427.9113335828227	31.727	0.62117	31.478	31.147	31.768	-0.24883					16	11	2	0	0	0	0.87037	1	11791	11791		5.7834	1.9375	1	18596000	+		26689	12577	17008	17099	25621	25621					0.08826840623169119
QTTSNTSRY	9	Unmodified	_QTTSNTSRY_					0	0	0		POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E;ENST00000563766.5_1_16:22320737-22320929:+|nuORF;ENST00000564256.1_1_16:22316488-22321235:+|nuORF;POLR3E|p.P340Lfs*35|1|0.38|ENSG00000058600|chr16:22322880-22322880|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	POLR3E|p.G595Afs*51|1|0.33|ENSG00000058600|chr16:22326189-22326189|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	529.24951171875	2	529.249077	1056.4836	0.43051	0.00022785	0.29044	0.00015372	0.72095	0.00038156	529.2493563064272	17.034	0.26093	17.034	16.837	17.098	0					9	4	3	0	0	0	0.051033	1	5778	5778		74.2	26.451	1	2447900			26690	1100	17009	17100	25622	25622					-0.04238100326847416
QTVAARPTSP	10	Unmodified	_QTVAARPTSP_					0	0	0			REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	514.7359619140625	2	514.28018	1026.54581	-0.053896	-2.7717E-05	0.47651	0.00024506	0.42262	0.00021734	514.7818290431886	18.293	0.26144	17.93	17.799	18.061	-0.36325					6	4	2	0	0	0	0.29734	1	6328	6328		9.3831	0	1	2788300	+		26691	17567	17010	17101	25623	25623					0.033596708121422125
QTVLRLHRL	9	Unmodified	_QTVLRLHRL_					0	0	0			REV__ENSG00000117139|ENST00000367265|KDM5B	REV__ENSG00000117139|ENST00000367265|KDM5B	MSMS	HCT116MG_D190212_S3	3	568.3587646484375	2	568.356557	1134.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.411	1	52.105	51.605	52.605	-0.30639								0	0	0	0.76886	1	19813	19813		7.9102	3.1541	1		+		26692	11610	17011	17102	25624	25624					0.13659910999399472
QTVRSHGV	8	Unmodified	_QTVRSHGV_					0	0	0		ENST00000470922.5_1_22:19165453-19166237:-|nuORF;ENSG00000100075|ENST00000215882|SLC25A1	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	MSMS	HCT116MG_D190212_S2	2	442.22662353515625	2	442.240858	882.467164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.726	1	19.351	18.851	19.851	-0.37503								0	0	0	0.8837	1	6856	6856		12.532	1.7076	1				26693	1660	17012	17103	25625	25625					0.021228632977113193
QVALAVLDA	9	Unmodified	_QVALAVLDA_					0	0	0		TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant	TBC1D9B|p.G1131Afs*78|1|0.18|ENSG00000197226|chr5:179863809-179863809|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	899.5202026367188	1	899.519659	898.512382	0.70491	0.00063408	0.44924	0.0004041	1.1541	0.0010382	899.5198303698475	42.045	0.31294	42.045	41.862	42.175	0					10	5	3	0	0	0	0.11731	1	15848	15848		54.774	2.5052	1	70714000			26694	6129	17013	17104	25626	25626					0.05906669040223278
QVDEAEEEIER	11	Unmodified	_QVDEAEEEIER_					0	0	0		ENSG00000143375|ENST00000271636|CGN;ENST00000467998.1_1_1:151508635-151509819:+|nuORF	ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	MSMS	HCT116MG_D190212_S2	2	673.8060913085938	2	673.807153	1345.59975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.35	1	40.277	39.777	40.777	-0.072838								0	0	0	0.93607	1	15214	15214		13.615	4.2317	1				26695	3806	17014	17105	25627	25627					-0.059222463374680956
QVDFHNLIR	9	Unmodified	_QVDFHNLIR_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MSMS	HCT116MG_D190212_S2	2	571.3355712890625	2	571.309272	1140.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.94	1	38.855	38.355	39.355	-0.084618								0	0	0	0.76759	1	14640	14640		9.3831	2.0939	1		+		26696	11700	17015	17106	25628	25628					0.03931352457425419
QVDFSPDMSY	10	Unmodified	_QVDFSPDMSY_					0	0	0		ENSG00000168438|ENST00000307731|CDC40;ENST00000606893.5_1_6:110533295-110551331:+|nuORF	ENSG00000168438|ENST00000307731|CDC40	ENSG00000168438|ENST00000307731|CDC40	MULTI-MSMS	HCT116MG_D190212_S3	3	595.2498779296875	2	594.747521	1187.48049	0.62496	0.00037169	-0.10407	-6.1893E-05	0.5209	0.0003098	595.2490224264028	47.012	0.20853	46.698	46.594	46.802	-0.31405					6	3	2	0	0	0	0.26742	1	17667	17667		53.404	40.362	1	4299400			26697	5009	17016	17107	25629	25629					-0.10575111495859346
QVDGGANFSV	10	Unmodified	_QVDGGANFSV_					0	0	0		nc|ENSG00000080819|P36551-2|CPOX;ENST00000515041.1_1_3:98309425-98312348:-|nuORF;ENSG00000080819|ENST00000647941|CPOX	nc|ENSG00000080819|P36551-2|CPOX	nc|ENSG00000080819|P36551-2|CPOX	MULTI-MSMS	HCT116MG_D190212_S2	2	993.464111328125	1	993.463601	992.456324	0.50658	0.00050327	-0.2891	-0.00028721	0.21748	0.00021606	993.4637654545419	39.755	0.25719	39.679	39.53	39.787	-0.075848					6	4	2	0	0	0	0.011241	1	15002	15002		142.08	76.845	1	16501000			26698	1399	17017	17108	25630	25630					-0.040205838672363825
QVDLNQQQY	9	Unmodified	_QVDLNQQQY_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MSMS	HCT116MG_D190212_S2	2	568.2732543945312	2	568.272552	1134.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.909	1	31.668	31.168	32.168	-0.24098								0	0	0	0.019415	1	11788	11788		92.491	65.608	1				26699	2409	17018	17109	25631	25631					-0.031332407757190595
QVDNSLITKY	10	Unmodified	_QVDNSLITKY_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	HCT116MG_D190212_S1	1	590.8141479492188	2	590.814053	1179.61355	0.66544	0.00039315	0.086461	5.1082E-05	0.75191	0.00044424	590.8139921700932	37.739	0.31298	37.739	37.55	37.863	0					13	5	4	0	0	0	0.021997	1	14112	14112		143.21	70.245	1	17922000			26700	5722	17019	17110	25632	25632					0.03093075952278923
QVDNSLITKY	10	Unmodified	_QVDNSLITKY_					0	0	0		nc|ENSG00000183530|Q5THK1-3|PRR14L;PRR14L|p.L1550*|1|0.31|ENSG00000183530|chr22:31713190-31713190|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-3|PRR14L	MULTI-MSMS	HCT116MG_D190212_S2	2	590.814697265625	2	590.814053	1179.61355	0.38149	0.00022539	0.34356	0.00020298	0.72505	0.00042837	590.8143966471656	37.772	0.30909	37.67	37.538	37.847	-0.10265					11	5	3	0	0	0	0.029228	1	14194	14194		128.57	66.971	1	70273000			26701	5722	17019	17110	25633	25633					0.03093075952278923
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	567.314208984375	2	567.313689	1132.61282	0.21808	0.00012372	0.60255	0.00034184	0.82063	0.00046555	567.3139672621759	50.013	0.41214	50.013	49.802	50.214	0					25	7	4	0	0	0	0.011036	1	19062	19062		143.21	99.441	1	171720000			26702	3000	17020	17111	25634	25634					0.05182281303223135
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	567.3151245117188	2	567.313689	1132.61282	0.29863	0.00016942	0.24045	0.00013641	0.53908	0.00030583	567.3137489160007	50.183	0.56889	50.011	49.729	50.298	-0.1719					34	10	5	0	0	0	8.2909E-07	2	19192	19158;19192		210.93	146.97	1	908680000			26703	3000	17020	17111	25635;25636	25636					0.05182281303223135
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1133.6204833984375	1	1133.6201	1132.61282	0.46448	0.00052654	-0.093195	-0.00010565	0.37128	0.00042089	1133.619524654212	50.213	0.30666	50.041	49.832	50.138	-0.1719					8	5	2	0	0	0	6.4721E-11	1	19244	19244		226.96	156.63	1	25500000			26704	3000	17020	17111	25637	25637					0.05182281303223135
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	567.3139038085938	2	567.313689	1132.61282	0.36088	0.00020473	-0.21671	-0.00012294	0.14418	8.1794E-05	567.3135714496372	50.413	0.46975	50.097	49.862	50.332	-0.31525					20	8	3	0	0	0	0.0040532	1	18991	18991		169.92	122.17	1	28058000			26705	3000	17020	17111	25638	25638					0.05182281303223135
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	ENST00000498778.5_1_7:131151082-131172419:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.815673828125	2	567.313689	1132.61282	0.37279	0.00021149	0.93272	0.00052914	1.3055	0.00074063	567.3142572915675	50.368	0.36341	50.009	49.897	50.261	-0.35878					12	6	3	0	0	0	0.030673	1	18725	18725		101.54	67.142	1	6086900			26706	3000	17020	17111	25639	25639					0.05182281303223135
QVDPNYAYAY	10	Unmodified	_QVDPNYAYAY_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	602.2700805664062	2	602.269478	1202.5244	0.80261	0.00048339	0.71931	0.00043322	1.5219	0.00091661	602.2698091810587	39.02	0.2577	38.935	38.806	39.063	-0.084618					8	4	2	0	0	0	0.025359	1	14697	14697		110.67	80.834	1	24518000			26707	806	17021	17112	25640	25640					-0.0687575900722095
QVDPNYAYAY	10	Unmodified	_QVDPNYAYAY_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1203.531982421875	1	1203.53168	1202.5244	0.6331	0.00076195	-0.63472	-0.00076391	-0.0016267	-1.9577E-06	1203.5311956727526	39.033	0.2062	38.949	38.857	39.063	-0.084618					5	3	2	0	0	0	0.015946	1	14703	14703		129.77	80.218	1	14633000			26708	806	17021	17112	25641	25641					-0.0687575900722095
QVDPNYAYAY	10	Unmodified	_QVDPNYAYAY_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	602.2694091796875	2	602.269478	1202.5244	0.57683	0.00034741	0.40834	0.00024593	0.98517	0.00059334	602.2695052302172	39.236	0.3715	38.935	38.768	39.14	-0.30137					13	6	3	0	0	0	0.13861	1	14601	14601		66.457	28.483	1	4760100			26709	806	17021	17112	25642	25642					-0.0687575900722095
QVDPNYAYAY	10	Unmodified	_QVDPNYAYAY_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	602.269478	1202.5244	0.22362	0.00013468	0.44812	0.00026989	0.67174	0.00040457	602.7713702854832	38.956	0.20766	38.956	38.851	39.059	0	0.014458	-9.4502E-05	NaN	110.67	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5808500			26710	806	17021	17112							-0.0687575900722095
QVDQITDP	8	Unmodified	_QVDQITDP_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MSMS	HCT116MG_D190212_S1	1	458.2246398925781	2	458.224539	914.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.407	1	23.407	22.907	23.907	0								0	0	0	0.54805	1	8334	8334		40.449	10.224	1		+		26711	14094	17022	17113	25643	25643					-0.026113886158100286
QVEDYTLFAMY	11	Unmodified	_QVEDYTLFAMY_					0	0	0			REV__nc|ENSG00000142273|Q9ULV8-2|CBLC	REV__nc|ENSG00000142273|Q9ULV8-2|CBLC	MULTI-MSMS	HCT116MG_D190212_S3	3	690.31396484375	2	690.313029	1378.6115	0.60065	0.00041464	-0.50257	-0.00034693	0.098087	6.7711E-05	690.3126967729609	17.499	1.0407	17.581	16.753	17.794	0.081356					48	19	4	0	0	0	0.73696	1	5701	5701		8.1555	0.54658	1	6332500	+		26712	12352	17023	17114	25644	25644					-0.06265720847841294
QVEHDGQP	8	Unmodified	_QVEHDGQP_					0	0	0		nc|ENSG00000101307|Q5TFQ8|SIRPB1;nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	nc|ENSG00000101307|Q5TFQ8|SIRPB1	nc|ENSG00000101307|Q5TFQ8|SIRPB1	MULTI-SECPEP	HCT116MG_D190212_S3	3	455.2611389160156	2	455.206681	908.398809	0.25827	0.00011757	-0.32768	-0.00014916	-0.069403	-3.1593E-05	455.2066599562847	18.638	0.72929	18.708	18.25	18.979	0.069157					28	13	3	0	0	0	0.23993	1	6179	6179		26.884	0	1	2700900			26713	6202	17024	17115	25645	25645					-0.059054260727975816
QVEQYKDYLIY	11	Unmodified	_QVEQYKDYLIY_					0	0	0		tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	tr|U7SGM6|U7SGM6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02249PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	731.369384765625	2	731.36665	1460.71875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.648	1	39.57	39.07	40.07	-0.077835								0	0	0	0.94538	1	14929	14929		8.7454	2.0222	1				26714	18299	17025	17116	25646	25646					0.006815723580530175
QVEREGGVPPC	11	Unmodified	_QVEREGGVPPC_					0	0	0			REV__ENST00000394455.6_1_14:68219172-68219214:-|nuORF	REV__ENST00000394455.6_1_14:68219172-68219214:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	586.2839965820312	2	585.78223	1169.54991	0.44414	0.00026017	0.1254	7.3459E-05	0.56954	0.00033363	585.7823863207789	20.319	1.1859	20.118	19.322	20.508	-0.20133					49	22	3	0	0	0	0.7298	1	6847	6847		10.8	0.64894	1	6133300	+		26715	15339	17026	17117	25647	25647					-0.02808607756423953
QVEREPSS	8	Unmodified	_QVEREPSS_					0	0	0			REV__IGSF3|p.G763Afs*27|2|0.32|ENSG00000143061|chr1:116588846-116588846|C/-|frameshift_variant	REV__IGSF3|p.G763Afs*27|2|0.32|ENSG00000143061|chr1:116588846-116588846|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	465.7720031738281	2	466.227613	930.440674	0.2017	9.404E-05	-1.0182	-0.00047469	-0.81645	-0.00038065	466.2270518173544	19.595	0.20745	19.22	19.091	19.298	-0.37503					5	3	2	0	0	0	0.29402	1	6804	6804		16.942	0	1	5184500	+		26716	12374	17027	17118	25648	25648					-0.02732870384272701
QVEVKEVTKEV	11	Unmodified	_QVEVKEVTKEV_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.K1530Gfs*18|1|0.27|ENSG00000118898|chr16:4884058-4884068|GCTCGCGCTTG/-|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MSMS	HCT116MG_D190212_S2	2	644.3616333007812	2	644.361367	1286.70818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.569	1	27.227	26.727	27.727	-0.34201								0	0	0	0.88801	1	10019	10019		21.537	1.1224	1				26717	2618	17028	17119	25649	25649					0.0762958970362888
QVFDTLLDSL	10	Unmodified	_QVFDTLLDSL_					0	0	0			REV__USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	REV__USP38|p.K823Nfs*2|1|0.24|ENSG00000170185|chr4:143214440-143214440|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	575.365234375	2	575.803154	1149.59175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.966	1	49.803	49.303	50.303	-0.16369								0	0	0	0.94339	1	19139	19139		6.2058	0	1		+		26718	13281	17029	17120	25650	25650					0.022942712037320234
QVFLKRFLRLR	11	Unmodified	_QVFLKRFLRLR_					0	0	0		ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	MSMS	HCT116MG_D190212_S4	4	738.4712524414062	2	738.469712	1474.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.846	1	48.481	47.981	48.981	-0.365								0	0	0	0.96149	1	18098	18098		0.30703	0.03801	1				26719	6517	17030	17121	25651	25651					0.20640654838484807
QVFPGLLERV	10	Unmodified	_QVFPGLLERV_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MSMS	HCT116MG_D190212_S2	2	579.2923583984375	2	579.337498	1156.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.449	1	54.259	53.759	54.759	-0.1894								0	0	0	0.19089	1	20963	20963		69.338	9.2643	1				26720	232	17031	17122	25652	25652					0.08837980294083536
QVFPGLLERV	10	Unmodified	_QVFPGLLERV_					0	0	0		nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10|p.F455Lfs*10|1|0.3|ENSG00000130638|chr22:45843115-45843115|T/-|frameshift_variant;ENSG00000130638|ENST00000252934|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF	nc|ENSG00000130638|Q9UBB4-2|ATXN10	nc|ENSG00000130638|Q9UBB4-2|ATXN10	MSMS	HCT116MG_D190212_S2	2	579.3377685546875	2	579.337498	1156.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.509	1	54.319	53.819	54.819	-0.1894								0	0	0	0.10359	1	20988	20988		81.915	25.738	1				26721	232	17031	17122	25653	25653					0.08837980294083536
QVFRLMRI	8	Unmodified	_QVFRLMRI_					0	0	0		ENSG00000124134|ENST00000537075|KCNS1	ENSG00000124134|ENST00000537075|KCNS1	ENSG00000124134|ENST00000537075|KCNS1	MULTI-MSMS	HCT116MG_D190212_S1	1	531.8174438476562	2	531.815679	1061.6168	0.42937	0.00022835	2.9025	0.0015436	3.3319	0.0017719	531.8168131982642	53.59	0.30932	53.59	53.411	53.72	0					8	5	2	0	0	0	0.85329	1	20558	20558		4.756	0.42677	1	22440000			26722	2826	17032	17123	25654	25654					0.08846092315957321
QVFSQAWFL	9	Unmodified	_QVFSQAWFL_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536;ZNF536|p.L608Cfs*5|1|0.42|ENSG00000198597|chr19:30445380-30445380|T/-|frameshift_variant	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MSMS	HCT116MG_D190212_S1	1	375.86346435546875	3	375.862437	1124.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.613	1	14.613	14.113	15.113	0								0	0	0	0.76902	1	4796	4796		2.4985	0.90621	1				26723	6245	17033	17124	25655	25655					0.008180468229056714
QVFTIVTVLN	10	Unmodified	_QVFTIVTVLN_					0	0	0		ENSG00000197938|ENST00000355273|OR5H2	ENSG00000197938|ENST00000355273|OR5H2	ENSG00000197938|ENST00000355273|OR5H2	MSMS	HCT116MG_D190212_S1	1	567.3303833007812	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.483	1	52.483	51.983	52.983	0								0	0	0	0.94551	1	20075	20075		5.7319	1.4026	1				26724	6187	17034	17125	25656	25656					0.0881915819995811
QVGDEHGAP	9	Unmodified	_QVGDEHGAP_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	HCT116MG_D190212_S4	4	455.26129150390625	2	455.206681	908.398809	0.16022	7.2934E-05	0.18053	8.2179E-05	0.34075	0.00015511	455.20681505156034	18.701	0.57065	18.52	18.097	18.667	-0.18052					19	10	3	0	0	0	0.21227	1	6227	6227		21.747	6.9084	1	1811200	+		26725	12015	17035	17126	25657	25657					-0.059054260727975816
QVHLPLPL	8	Unmodified	_QVHLPLPL_					0	0	0		ENST00000359365.8_1_3:50369556-50375441:-|nuORF	ENST00000359365.8_1_3:50369556-50375441:-|nuORF	ENST00000359365.8_1_3:50369556-50375441:-|nuORF	MSMS	HCT116MG_D190212_S1	1	458.7861633300781	2	458.78437	915.554188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.301	1	37.301	36.801	37.801	0								0	0	0	0.8396	1	13932	13932		19.439	0	1				26726	7336	17036	17127	25658	25658					0.09303269519432433
QVIARSRN	8	Unmodified	_QVIARSRN_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-3|PHF8	REV__nc|ENSG00000172943|Q9UPP1-3|PHF8	MULTI-MSMS	HCT116MG_D190212_S1	1	472.2751770019531	2	472.275232	942.535912	0.1579	7.4572E-05	0.2025	9.5635E-05	0.3604	0.00017021	472.27523243884025	49.621	0.72362	49.621	49.027	49.75	0					22	13	2	0	0	0	0.81821	1	18762	18762		9.3474	0	1	101880000	+		26727	17215	17037	17128	25659	25659					0.062345275974166725
QVIENQHYML	10	Unmodified	_QVIENQHYML_					0	0	0			REV__UTP20|p.V82M|1|0.09|ENSG00000120800|chr12:101285799-101285799|G/A|missense_variant	REV__UTP20|p.V82M|1|0.09|ENSG00000120800|chr12:101285799-101285799|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	637.8145141601562	2	637.81353	1273.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.429	1	14.109	13.609	14.609	-0.31952								0	0	0	0.96453	1	4723	4723		1.4819	0	1		+		26728	18046	17038	17129	25660	25660					-0.013354616882907067
QVIPVLPQV	9	Unmodified	_QVIPVLPQV_					0	0	0		ENST00000492178.1_1_3:3214458-3216930:-|nuORF;ENST00000498700.5_1_3:3214275-3221371:-|nuORF;ENST00000491834.5_1_3:3197887-3221343:-|nuORF;CRBN|p.Q297Lfs*6|1|0.04|ENSG00000113851|chr3:3154021-3154022|-/CTGTATA|frameshift_variant;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000478353.1_1_3:3215741-3221371:-|nuORF	ENST00000492178.1_1_3:3214458-3216930:-|nuORF	ENST00000492178.1_1_3:3214458-3216930:-|nuORF	MSMS	HCT116MG_D190212_S2	2	496.7745361328125	2	496.810585	991.606617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.228	1	55.04	54.54	55.54	-0.18797								0	0	0	0.69648	1	21284	21284		19.257	4.4187	1				26729	599	17039	17130	25661	25661					0.11047807862371428
QVIRLYQRRR	10	Unmodified	_QVIRLYQRRR_					0	0	0		ENSG00000186160|ENST00000334194|CYP4Z1;nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P	ENSG00000186160|ENST00000334194|CYP4Z1	ENSG00000186160|ENST00000334194|CYP4Z1	MSMS	HCT116MG_D190212_S1	1	694.4225463867188	2	694.423294	1386.83203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.238	1	49.238	48.738	49.738	0								0	0	0	0.96836	1	18756	18756		1.4819	0.15237	1				26730	5870	17040	17131	25662	25662					0.1540915010509707
QVKAKPSVYFI	11	Unmodified	_QVKAKPSVYFI_					0	0	0		SPIN2B|p.E233K|1|0.21|ENSG00000186787|chrX:57119933-57119933|C/T|missense_variant	SPIN2B|p.E233K|1|0.21|ENSG00000186787|chrX:57119933-57119933|C/T|missense_variant	SPIN2B|p.E233K|1|0.21|ENSG00000186787|chrX:57119933-57119933|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	427.2514343261719	3	427.251813	1278.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.303	1	61.161	60.661	61.661	-0.14227								0	0	0	0.95996	1	23742	23742		1.1098	0.65524	1				26731	18230	17041	17132	25663	25663					0.10539109016713155
QVKGQPESTK	10	Unmodified	_QVKGQPESTK_					0	0	0			REV__ENSG00000124103|ENST00000371328|FAM209A	REV__ENSG00000124103|ENST00000371328|FAM209A	MULTI-SECPEP	HCT116MG_D190212_S2	2	551.3170166015625	2	551.29857	1100.58259	0.27972	0.00015421	0.17781	9.8029E-05	0.45754	0.00025224	551.2986230116946	19.15	0.78217	18.781	18.314	19.096	-0.3695					44	14	4	0	0	0	0.27123	1	6448	6448		41.84	0	1	64343000	+		26732	11776	17042	17133	25664	25664					0.03631922638032847
QVKIRFGSDP	10	Unmodified	_QVKIRFGSDP_					0	0	0		nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.P742Qfs*55|1|0.37|ENSG00000127511|chr19:16869777-16869777|C/-|frameshift_variant;SIN3B|p.F776Lfs*21|1|0.31|ENSG00000127511|chr19:16869880-16869880|T/-|frameshift_variant;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	nc|ENSG00000127511|O75182-3|SIN3B	nc|ENSG00000127511|O75182-3|SIN3B	MULTI-SECPEP	HCT116MG_D190212_S4	4	574.254638671875	2	573.81693	1145.61931	0.43604	0.00025021	0.085392	4.9E-05	0.52143	0.00029921	573.8168886552867	31.302	0.46514	30.931	30.662	31.127	-0.37026					13	8	2	0	0	0	0.31009	1	11332	11332		1.1933	0	1	2049600			26733	2967	17043	17134	25665	25665					0.05232219254617121
QVKRFQEIP	9	Unmodified	_QVKRFQEIP_					0	0	0		ENST00000432242.5_1_2:98833411-98885811:+|nuORF;ENST00000448638.5_1_2:98797652-98853199:+|nuORF;nc|ENSG00000168658|Q502W6-5|VWA3B;ENST00000495571.5_1_2:98833411-98928809:+|nuORF;nc|ENSG00000168658|Q502W6-8|VWA3B;ENST00000409460.5_1_2:98703705-98907168:+|nuORF;ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B	ENST00000432242.5_1_2:98833411-98885811:+|nuORF	ENST00000432242.5_1_2:98833411-98885811:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	572.8267211914062	2	572.827298	1143.64004	0.40022	0.00022926	0.25602	0.00014666	0.65624	0.00037591	572.8274114639653	24.802	0.46802	24.426	24.14	24.608	-0.37521					20	8	3	0	0	0	0.37942	1	8870	8870		32.305	1.0371	1	123400000			26734	5023	17044	17135	25666	25666					0.0739680963426963
QVKRFQEIP	9	Unmodified	_QVKRFQEIP_					0	0	0		ENST00000432242.5_1_2:98833411-98885811:+|nuORF;ENST00000448638.5_1_2:98797652-98853199:+|nuORF;nc|ENSG00000168658|Q502W6-5|VWA3B;ENST00000495571.5_1_2:98833411-98928809:+|nuORF;nc|ENSG00000168658|Q502W6-8|VWA3B;ENST00000409460.5_1_2:98703705-98907168:+|nuORF;ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B	ENST00000432242.5_1_2:98833411-98885811:+|nuORF	ENST00000432242.5_1_2:98833411-98885811:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	572.827298	1143.64004	0.71249	0.00040813	-0.12387	-7.0956E-05	0.58862	0.00033718	572.8270698086209	24.607	0.31103	24.338	24.134	24.445	-0.26881	0.017306	-0.0003607	NaN	32.305	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2253100			26735	5023	17044	17135							0.0739680963426963
QVKYFVHYNWW	11	Unmodified	_QVKYFVHYNWW_					0	0	0		ENST00000433352.1_1_X:64550801-64551062:-|nuORF	ENST00000433352.1_1_X:64550801-64551062:-|nuORF	ENST00000433352.1_1_X:64550801-64551062:-|nuORF	MSMS	HCT116MG_D190212_S4	4	785.3870239257812	2	785.385511	1568.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.887	1	35.501	35.001	36.001	-0.38606								0	0	0	0.95954	1	13112	13112		1.3295	0	1				26736	7868	17045	17136	25667	25667					-0.005158718658094585
QVLKYRRL	8	Unmodified	_QVLKYRRL_					0	0	0		ENST00000409003.4_2_8:119208954-119209107:-|nuORF	ENST00000409003.4_2_8:119208954-119209107:-|nuORF	ENST00000409003.4_2_8:119208954-119209107:-|nuORF	MSMS	HCT116MG_D190212_S1	1	359.2286682128906	3	359.229342	1074.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.771	1	30.771	30.271	31.271	0								0	0	0	0.8837	1	11298	11298		7.2892	0	1				26737	7724	17046	17137	25668	25668					0.13185123596394988
QVLRIHLLE	9	Unmodified	_QVLRIHLLE_					0	0	0		ENST00000526955.1_1_11:125255606-125280135:+|nuORF;ENST00000480179.1_1_21:44424491-44437149:+|nuORF;nc|ENSG00000160199|P55347-2|PKNOX1;nc|ENSG00000165495|Q96KN3-2|PKNOX2;ENSG00000160199|ENST00000291547|PKNOX1;ENSG00000165495|ENST00000298282|PKNOX2	ENST00000526955.1_1_11:125255606-125280135:+|nuORF	ENST00000526955.1_1_11:125255606-125280135:+|nuORF	MSMS	HCT116MG_D190212_S1	1	374.23272705078125	3	374.232752	1119.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.512	1	57.512	57.012	58.012	0								0	0	0	0.76954	1	22132	22132		2.4985	0.59211	1				26738	4434	17047	17138	25669	25669					0.12137686530991232
QVLRRRTSRRE	11	Unmodified	_QVLRRRTSRRE_					0	0	0		ENST00000372674.5_1_X:102564842-102565857:-|nuORF;ENST00000449185.1_2_X:102564842-102565604:-|nuORF;ENST00000536889.1_1_X:102564842-102565604:-|nuORF;ENST00000372677.7_1_X:102564842-102565956:-|nuORF	ENST00000372674.5_1_X:102564842-102565857:-|nuORF	ENST00000372674.5_1_X:102564842-102565857:-|nuORF	MSMS	HCT116MG_D190212_S1	1	728.9342651367188	2	728.932014	1455.84948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.531	1	22.531	22.031	23.031	0								0	0	0	0.95422	1	7981	7981		4.897	0	1				26739	7462	17048	17139	25670	25670					0.1397844564010029
QVLWRERRRQK	11	Unmodified	_QVLWRERRRQK_					0	0	0			REV__RNF180|p.L394_Q395insV|1|0.05|ENSG00000164197|chr5:64214508-64214509|-/GTG|inframe_insertion	REV__RNF180|p.L394_Q395insV|1|0.05|ENSG00000164197|chr5:64214508-64214509|-/GTG|inframe_insertion	MULTI-SECPEP	HCT116MG_D190212_S1	1	390.1070251464844	4	389.482654	1553.90151	-0.0353	-1.3749E-05	-1.008	-0.0003926	-1.0433	-0.00040635	389.48225876251956	9.7684	0.16412	9.7684	9.6834	9.8475	0					12	12	2	0	0	0	0.36631	1	2947	2947		0.08335	0	1	425650	+		26740	17474	17049	17140	25671	25671					0.14671609053857537
QVPCCVEHF	9	Unmodified	_QVPCCVEHF_					0	0	0		ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	531.3247680664062	2	531.230787	1060.44702	0.61443	0.0003264	-0.15415	-8.1888E-05	0.46028	0.00024452	531.2307152093641	51.902	0.25772	51.719	51.629	51.887	-0.18368					7	4	2	0	0	0	0.26676	1	19963	19963		4.756	1.1595	1	10893000			26741	7432	17050	17141	25672	25672					-0.08078391748790636
QVPCQCPDAP	10	Unmodified	_QVPCQCPDAP_					0	0	0		CAMTA2|p.G665C|1|0.42|ENSG00000108509|chr17:4974408-4974408|C/A|missense_variant	CAMTA2|p.G665C|1|0.42|ENSG00000108509|chr17:4974408-4974408|C/A|missense_variant	CAMTA2|p.G665C|1|0.42|ENSG00000108509|chr17:4974408-4974408|C/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.7957763671875	2	529.225702	1056.43685	0.58667	0.00031048	2.9747	0.0015743	3.5614	0.0018848	529.227376685076	40.821	0.20667	40.751	40.622	40.829	-0.069626					5	3	2	0	0	0	0.28496	1	15368	15368		13.906	0	1	14872000			26742	320	17051	17142	25673	25673					-0.08910999474028358
QVQGWETGE	9	Unmodified	_QVQGWETGE_					0	0	0		ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENST00000470043.1_1_10:103792731-103793132:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	517.2320556640625	2	517.232896	1032.45124	0.38686	0.0002001	-0.38433	-0.00019879	0.0025304	1.3088E-06	517.2326624251334	25.572	0.67627	25.292	24.902	25.578	-0.27958					22	12	2	0	0	0	0.51829	1	9004	9004		15.847	15.847	1	5010700			26743	8144	17052	17143	25674	25674					-0.06368887729854578
QVQHQPSSFPS	11	Unmodified	_QVQHQPSSFPS_					0	0	0			REV__TAB3|p.Y613Mfs*4|1|0.37|ENSG00000157625|chrX:30843017-30843017|A/-|frameshift_variant	REV__TAB3|p.Y613Mfs*4|1|0.37|ENSG00000157625|chrX:30843017-30843017|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	621.2962036132812	2	621.299101	1240.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.588	1	19.394	18.894	19.894	-0.19367								0	0	0	0.9387	1	6653	6653		12.241	2.8575	1		+		26744	12760	17053	17144	25675	25675					-0.027018629930580573
QVQKENEVK	9	Unmodified	_QVQKENEVK_					0	0	0		tr|U7T145|U7T145_FUSNUCaldesmon(CDM)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00687PE=4SV=1	tr|U7T145|U7T145_FUSNUCaldesmon(CDM)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00687PE=4SV=1	tr|U7T145|U7T145_FUSNUCaldesmon(CDM)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00687PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	367.8802490234375	3	367.868139	1100.58259	-0.31006	-0.00011406	0.11746	4.3211E-05	-0.19259	-7.0849E-05	367.8680905967279	19.16	0.73002	18.791	18.314	19.044	-0.3695					34	13	3	0	0	0	0.24524	1	6449	6449		10.151	0	1	31307000			26745	18555	17054	17145	25676	25676					0.03631922638032847
QVRNLPIR	8	Unmodified	_QVRNLPIR_					0	0	0			REV__NAPSA|p.H32N|1|0.36|ENSG00000131400|chr19:50362303-50362303|G/T|missense_variant	REV__NAPSA|p.H32N|1|0.36|ENSG00000131400|chr19:50362303-50362303|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	498.30975341796875	2	498.309075	994.603597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.368	1	53.033	52.533	53.533	-0.33473								0	0	0	0.8837	1	19923	19923		2.5775	0	1		+		26746	17061	17055	17146	25677	25677					0.10607977528241008
QVRRYKGLM	9	Unmodified	_QVRRYKGLM_					0	0	0		nc|ENSG00000125454|Q9HC21-2|SLC25A19;ENSG00000125454|ENST00000416858|SLC25A19	nc|ENSG00000125454|Q9HC21-2|SLC25A19	nc|ENSG00000125454|Q9HC21-2|SLC25A19	MSMS	HCT116MG_D190212_S1	1	384.212890625	3	384.22197	1149.64408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.862	1	27.862	27.362	28.362	0								0	0	0	0.76991	1	10128	10128		1.1933	0.12188	1				26747	2886	17056	17147	25678	25678					0.07524575856336924
QVTQPTVGMN	10	Oxidation (M)	_QVTQPTVGM(Oxidation (M))N_		QVTQPTVGM(1)N		QVTQPTVGM(87)N	0	0	1		ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17;ENST00000558397.1_1_15:83205554-83206687:-|nuORF;ENST00000561157.5_1_15:83205554-83205662:-|nuORF;ENST00000461663.1_1_5:116052154-116052343:+|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7626342773438	2	545.763506	1089.51246	0.49635	0.00027089	0.072248	3.943E-05	0.5686	0.00031032	545.7634567855282	22.738	0.31195	22.353	22.206	22.518	-0.3852					10	5	2	0	0	0	0.049927	1	8078	8078		87.258	41.559	1	9779400			26748	5686	17057	17148	25679	25679		124			-0.028716990220800653
QVVASHRV	8	Unmodified	_QVVASHRV_					0	0	0		nc|ENSG00000187243|Q96JG8-3|MAGED4;ENST00000470594.5_1_X:51809762-51812242:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4	nc|ENSG00000187243|Q96JG8-3|MAGED4	nc|ENSG00000187243|Q96JG8-3|MAGED4	MULTI-MSMS	HCT116MG_D190212_S1	1	895.510986328125	1	895.510826	894.503549	0.51063	0.00045728	0.5893	0.00052772	1.0999	0.000985	895.5113162095581	48.383	0.30782	48.383	48.203	48.511	0					9	5	2	0	0	0	0.8672	1	18411	18411		2.3027	0	1	55653000			26749	4223	17058	17149	25680	25680					0.05207740194430244
QVVELQKKK	9	Unmodified	_QVVELQKKK_					0	0	0			REV__VEPH1|p.N441Tfs*42|1|0.28|ENSG00000197415|chr3:157364318-157364318|T/-|frameshift_variant	REV__VEPH1|p.N441Tfs*42|1|0.28|ENSG00000197415|chr3:157364318-157364318|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	367.2337341308594	3	367.232641	1098.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.689	1	54.365	53.865	54.865	-0.32349								0	0	0	0.76995	1	20456	20456		1.0715	0	1		+		26750	14070	17059	17150	25681	25681					0.1307026681113257
QVVIIDDKQIE	11	Unmodified	_QVVIIDDKQIE_					0	0	0			REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	REV__tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	650.0775146484375	2	650.361367	1298.70818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.271	1	48.128	47.628	48.628	-0.1437								0	0	0	0.94012	1	18437	18437		11.495	4.7715	1		+		26751	17787	17060	17151	25682	25682					0.0707758970361283
QVVKKDSTKG	10	Unmodified	_QVVKKDSTKG_					0	0	0			REV__POLQ|p.K1304Lfs*11|1|0.06|ENSG00000051341|chr3:121489022-121489023|-/GAAGGAGT|frameshift_variant	REV__POLQ|p.K1304Lfs*11|1|0.06|ENSG00000051341|chr3:121489022-121489023|-/GAAGGAGT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.8187255859375	2	545.316763	1088.61897	0.59575	0.00032487	-0.25808	-0.00014073	0.33767	0.00018414	545.3164683358575	48.705	1.4181	48.561	47.982	49.4	-0.1437					44	27	2	0	0	0	0.86862	1	18772	18772		6.2058	0.47393	1	73584000	+		26752	17430	17061	17152	25683	25683					0.07820799534738399
QVVKKTAA	8	Unmodified	_QVVKKTAA_					0	0	0			REV__nc|ENSG00000133136|A0A804HLA8|GNG5B	REV__nc|ENSG00000133136|A0A804HLA8|GNG5B	MSMS	HCT116MG_D190212_S4	4	422.76458740234375	2	422.766178	843.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.196	1	48.831	48.331	49.331	-0.365								0	0	0	0.8837	1	18240	18240		0.69038	0	1		+		26753	17133	17062	17153	25684	25684					0.08978392622691445
QVVLELAQ	8	Unmodified	_QVVLELAQ_					0	0	0			REV__nc|ENSG00000157617|Q9Y426-3|C2CD2	REV__nc|ENSG00000157617|Q9Y426-3|C2CD2	MSMS	HCT116MG_D190212_S4	4	450.263671875	2	450.263468	898.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.488	1	42.113	41.613	42.613	-0.37565								0	0	0	0.8837	1	15618	15618		8.5933	0.68312	1		+		26754	12759	17063	17154	25685	25685					0.05906669040223278
QVVQFNRLPLV	11	Unmodified	_QVVQFNRLPLV_					0	0	0		nc|ENSG00000109270|Q9UHA4-2|LAMTOR3;ENSG00000109270|ENST00000499666|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MSMS	HCT116MG_D190212_S3	3	656.8876953125	2	656.890429	1311.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.456	1	50.142	49.642	50.642	-0.31406								0	0	0	0.95113	1	19027	19027		5.7319	0	1				26755	2200	17064	17155	25686	25686					0.12289316139549555
QVVRWLRLRR	10	Unmodified	_QVVRWLRLRR_					0	0	0		ENST00000603271.1_3_19:58331137-58367481:+|nuORF;ENST00000593873.5_3_19:58331110-58369965:+|nuORF	ENST00000603271.1_3_19:58331137-58367481:+|nuORF	ENST00000603271.1_3_19:58331137-58367481:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	691.4365844726562	2	691.436204	1380.85786	0.64363	0.00044503	-0.86072	-0.00059513	-0.21709	-0.0001501	691.4357162721938	59.618	0.66513	59.458	59.285	59.95	-0.16012					21	13	2	0	0	0	0.89293	1	23118	23118		0.35063	0	1	22171000			26756	9051	17065	17156	25687	25687					0.18266044347365096
QVVTLISIKE	10	Unmodified	_QVVTLISIKE_					0	0	0			REV__tr|U7T4V6|U7T4V6_FUSNUUPF0735ACTdomain-containingproteinHMPREF1766_00573OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00573PE=3SV=1	REV__tr|U7T4V6|U7T4V6_FUSNUUPF0735ACTdomain-containingproteinHMPREF1766_00573OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00573PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	377.2330017089844	3	377.232418	1128.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.973	1	41.904	41.404	42.404	-0.068199								0	0	0	0.95511	1	15874	15874		3.5871	0.26742	1		+		26757	17972	17066	17157	25688	25688					0.11623427371432626
QVVVPIRH	8	Unmodified	_QVVVPIRH_					0	0	0			REV__nc|ENSG00000118922|Q9Y4X4-2|KLF12	REV__nc|ENSG00000118922|Q9Y4X4-2|KLF12	MSMS	HCT116MG_D190212_S3	3	474.2906188964844	2	474.292894	946.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.91	1	51.601	51.101	52.101	-0.30927								0	0	0	0.8837	1	19611	19611		5.2307	0	1		+		26758	11648	17067	17158	25689	25689					0.09581190125209105
QVVVQLAALP	10	Unmodified	_QVVVQLAALP_					0	0	0		ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant;ARHGEF40|p.P1111Lfs*5|2|0.26|ENSG00000165801|chr14:21082320-21082320|C/-|frameshift_variant;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ARHGEF40|p.H1487Tfs*15|3|0.37|ENSG00000165801|chr14:21088033-21088033|C/-|frameshift_variant;ENSG00000165801|ENST00000298694|ARHGEF40;ARHGEF40|p.A705Efs*26|1|0.07|ENSG00000165801|chr14:21078255-21078256|-/AGTTT|frameshift_variant	ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant	ARHGEF40|p.R1076Gfs*18|1|0.19|ENSG00000165801|chr14:21082089-21082089|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	519.2611694335938	2	519.321317	1036.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.992	1	44.683	44.183	45.183	-0.30927								0	0	0	0.95351	1	16833	16833		3.9444	0.3479	1				26759	182	17068	17159	25690	25690					0.11123192891068356
QVVVTHRVSQL	11	Unmodified	_QVVVTHRVSQL_					0	0	0			REV__GRIN3A|p.C185R|1|0.27|ENSG00000198785|chr9:101737427-101737427|A/G|missense_variant	REV__GRIN3A|p.C185R|1|0.27|ENSG00000198785|chr9:101737427-101737427|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	633.368408203125	2	633.369861	1264.72517	0.34309	0.0002173	-0.79237	-0.00050186	-0.44928	-0.00028456	633.3690517924375	50.869	1.2443	50.514	49.901	51.145	-0.35483					39	23	3	0	0	0	0.74191	1	18851	18851		1.3295	0	1	8556400	+		26760	16860	17069	17160	25691	25691					0.10339555100085818
QVVVTHRVSQL	11	Unmodified	_QVVVTHRVSQL_					0	0	0			REV__GRIN3A|p.C185R|1|0.27|ENSG00000198785|chr9:101737427-101737427|A/G|missense_variant	REV__GRIN3A|p.C185R|1|0.27|ENSG00000198785|chr9:101737427-101737427|A/G|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	633.369861	1264.72517	0.51716	0.00032755	-1.2604	-0.0007983	-0.74324	-0.00047075	633.3689708930365	50.258	0.51511	50.258	50.059	50.574	0	-0.086629	-0.00043487	NaN	1.3295	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50299000	+		26761	16860	17069	17160							0.10339555100085818
QVVVTHRVSQL	11	Unmodified	_QVVVTHRVSQL_					0	0	0			REV__GRIN3A|p.C185R|1|0.27|ENSG00000198785|chr9:101737427-101737427|A/G|missense_variant	REV__GRIN3A|p.C185R|1|0.27|ENSG00000198785|chr9:101737427-101737427|A/G|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	633.369861	1264.72517	0.52376	0.00033174	-0.83265	-0.00052737	-0.30888	-0.00019564	633.3693721129858	50.434	0.98802	50.262	49.985	50.973	-0.1719	-0.082776	0.00010698	NaN	1.3295	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20872000	+		26762	16860	17069	17160							0.10339555100085818
QVVYFFFEE	9	Unmodified	_QVVYFFFEE_					0	0	0		ENST00000466698.1_1_1:156130343-156131310:+|nuORF;nc|ENSG00000196189|Q9H3S1-2|SEMA4A;ENSG00000196189|ENST00000368285|SEMA4A	ENST00000466698.1_1_1:156130343-156131310:+|nuORF	ENST00000466698.1_1_1:156130343-156131310:+|nuORF	MSMS	HCT116MG_D190212_S2	2	603.90673828125	2	604.28714	1206.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.147	1	48.014	47.514	48.514	-0.13281								0	0	0	0.76818	1	18386	18386		7.2892	0.56607	1				26763	6048	17070	17161	25692	25692					-0.0352909647940578
QVVYGLQFVP	10	Unmodified	_QVVYGLQFVP_					0	0	0			REV__ENST00000572418.1_1_17:3801110-3806945:-|nuORF	REV__ENST00000572418.1_1_17:3801110-3806945:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	575.3187866210938	2	575.318774	1148.623	0.43399	0.00024968	0.26672	0.00015345	0.70071	0.00040313	575.3187217691922	45.373	0.25944	45.373	45.244	45.503	0					8	4	3	0	0	0	0.3029	1	17220	17220		6.7232	0	1	18165000	+		26764	11344	17071	17162	25693	25693					0.054628890284675435
QVWCRWELRKR	11	Unmodified	_QVWCRWELRKR_					0	0	0		ENST00000531718.5_1_11:85339667-85342195:+|nuORF;ENST00000530783.5_1_11:85339667-85340215:+|nuORF;ENST00000358867.10_2_11:85339667-85342779:+|nuORF	ENST00000531718.5_1_11:85339667-85342195:+|nuORF	ENST00000531718.5_1_11:85339667-85342195:+|nuORF	MSMS	HCT116MG_D190212_S4	4	780.4258422851562	2	780.422436	1558.83032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.446	1	29.097	28.597	29.597	-0.34921								0	0	0	0.95954	1	10634	10634		1.3295	0	1				26765	7326	17072	17163	25694	25694					0.07325773024808768
QVWEPLQDTEH	11	Unmodified	_QVWEPLQDTEH_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-MSMS	HCT116MG_D190212_S4	4	691.3220825195312	2	691.322773	1380.63099	0.73946	0.00051121	-1.7797	-0.0012304	-1.0403	-0.00071916	691.3208483787432	23.919	0.67605	23.661	23.157	23.833	-0.25816					24	12	3	0	0	0	0.7259	1	8374	8374		12.241	2.0901	1	3730100			26766	6644	17073	17164	25695	25695					-0.04409628512735253
QWCDSEMEAPQ	11	Unmodified	_QWCDSEMEAPQ_					0	0	0			REV__ENST00000404404.5_1_7:5036913-5037096:+|nuORF	REV__ENST00000404404.5_1_7:5036913-5037096:+|nuORF	MSMS	HCT116MG_D190212_S4	4	662.254150390625	2	662.252645	1322.49074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.251	1	32.869	32.369	33.369	-0.38223								0	0	0	0.90489	1	12107	12107		19.362	4.1135	1		+		26767	15404	17074	17165	25696	25696					-0.157608718329584
QWDKQHDM	8	Unmodified	_QWDKQHDM_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;FN1|p.S1791Rfs*9|1|0.07|ENSG00000115414|chr2:215378239-215378239|A/-|frameshift_variant;FN1|p.L1714*|1|0.2|ENSG00000115414|chr2:215380832-215380832|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MSMS	HCT116MG_D190212_S1	1	363.1593017578125	3	363.159036	1086.45528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.65	1	62.65	62.15	63.15	0								0	0	0	0.8837	1	24195	24195		0.45834	0	1				26768	2466	17075	17166	25697	25697					-0.08449121507806012
QWECDGENDC	10	Unmodified	_QWECDGENDC_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.R3469Gfs*24|2|0.38|ENSG00000123384|chr12:57201552-57201552|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MSMS	HCT116MG_D190212_S1	1	599.6945190429688	2	599.69242	1197.37029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.452	1	55.452	54.952	55.952	0								0	0	0	0.96911	1	21294	21294		0.45834	0.057624	1				26769	2800	17076	17167	25698	25698					-0.2205027982656702
QWGPASTPSLY	11	Unmodified	_QWGPASTPSLY_					0	0	0		ENSG00000088766|ENST00000378863|CRLS1	ENSG00000088766|ENST00000378863|CRLS1	ENSG00000088766|ENST00000378863|CRLS1	MULTI-MSMS	HCT116MG_D190212_S3	3	604.2954711914062	2	603.793121	1205.57169	0.60131	0.00036307	0.3495	0.00021102	0.95081	0.00057409	604.2952733020617	45.433	0.52195	45.122	44.731	45.253	-0.31094					11	9	2	0	0	0	0.7259	1	17044	17044		12.241	0	1	3924300			26770	1499	17077	17168	25699	25699					-0.022874797362192112
QWGRWLERRRI	11	Unmodified	_QWGRWLERRRI_					0	0	0			REV__ENST00000322652.9_1_17:30264237-30264510:+|nuORF	REV__ENST00000322652.9_1_17:30264237-30264510:+|nuORF	MSMS	HCT116MG_D190212_S1	1	778.443603515625	2	778.439475	1554.8644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.012	1	52.012	51.512	52.512	0								0	0	0	0.96141	1	19883	19883		0.35063	0.043601	1		+		26771	14890	17078	17169	25700	25700					0.1091593750809352
QWKDKPVP	8	Unmodified	_QWKDKPVP_					0	0	0		nc|ENSG00000112655|Q13308-4|PTK7	nc|ENSG00000112655|Q13308-4|PTK7	nc|ENSG00000112655|Q13308-4|PTK7	MSMS	HCT116MG_D190212_S3	3	499.2747497558594	2	499.276909	996.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.713	1	45.402	44.902	45.902	-0.31094								0	0	0	0.8837	1	17123	17123		6.3541	0.59368	1				26772	9429	17079	17170	25701	25701					0.04085777651414446
QWLLLKYKSII	11	Unmodified	_QWLLLKYKSII_					0	0	0		ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	MULTI-MSMS	HCT116MG_D190212_S3	3	469.2900390625	3	468.958629	1403.85406	0.31057	0.00014564	0.24102	0.00011303	0.55159	0.00025867	468.95907793199206	52.571	0.7319	52.264	51.934	52.666	-0.30639					20	13	2	0	0	0	0.74191	1	19827	19827		1.4551	0.94916	1	3960000			26773	6309	17080	17171	25702	25702					0.16828517010321775
QWLLLKYKSII	11	Unmodified	_QWLLLKYKSII_					0	0	0		ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	468.958629	1403.85406	0.38773	0.00018183	1.3539	0.00063493	1.7416	0.00081676	468.9591964241516	52.104	1.3386	51.92	51.063	52.402	-0.18424	-0.17215	1.6377E-05	NaN	1.4551	58	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52936000			26774	6309	17080	17171							0.16828517010321775
QWLQFEWFL	9	Unmodified	_QWLQFEWFL_					0	0	0			REV__ENST00000297632.7_2_8:125334358-125339602:-|nuORF	REV__ENST00000297632.7_2_8:125334358-125339602:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.8851013183594	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5201	1	2.2556	1.7556	2.7556	-0.26456								0	0	0	0.77018	1	766	766		0.26902	0	1		+		26775	14765	17081	17172	25703	25703					-0.002097085972536661
QWRGRRRGRR	10	Unmodified	_QWRGRRRGRR_					0	0	0		ENST00000491143.2_1_18:55102944-55103118:+|nuORF	ENST00000491143.2_1_18:55102944-55103118:+|nuORF	ENST00000491143.2_1_18:55102944-55103118:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	692.4067993164062	2	692.406301	1382.79805	0.71693	0.00049641	0.37448	0.00025929	1.0914	0.0007557	692.4062740746456	52.012	2.7319	52.012	50.833	53.565	0					84	52	3	0	0	0	0.89272	1	20430	20430		0.40072	0.40072	1	58405000			26776	8341	17082	17173	25704	25704					0.12196166456715218
QWRHNLQEQTN	11	Unmodified	_QWRHNLQEQTN_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	HCT116MG_D190212_S1	1	484.77081298828125	3	485.235884	1452.68582	0.21359	0.00010364	-0.13743	-6.6688E-05	0.076151	3.6951E-05	485.2356594288931	27.099	0.31211	27.099	26.97	27.282	0					11	5	3	0	0	0	0.36055	1	9823	9823		14.171	10.054	1	8197200	+		26777	13462	17083	17174	25705	25705					-0.022411969214545024
QWRLRRTRLCK	11	Unmodified	_QWRLRRTRLCK_					0	0	0		OLFML2B|p.P32Qfs*50|1|0.3|ENSG00000162745|chr1:162023336-162023336|G/-|frameshift_variant	OLFML2B|p.P32Qfs*50|1|0.3|ENSG00000162745|chr1:162023336-162023336|G/-|frameshift_variant	OLFML2B|p.P32Qfs*50|1|0.3|ENSG00000162745|chr1:162023336-162023336|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	505.9658508300781	3	505.964894	1514.87285	0.4876	0.00024671	1.2717	0.00064346	1.7593	0.00089017	505.9656930600638	53.795	0.92407	53.795	53.204	54.128	0					26	17	2	0	0	0	0.74191	1	20483	20483		0.094841	0.011491	1	21043000			26778	9714	17084	17175	25706	25706					0.13601168153081744
QWRRLPRLRRP	11	Unmodified	_QWRRLPRLRRP_					0	0	0			REV__IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant	REV__IRF2BPL|p.G244Vfs*101|1|0.32|ENSG00000119669|chr14:77027062-77027062|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	766.9721069335938	2	767.471109	1532.92767	0.79723	0.00061185	3.229	0.0024781	4.0262	0.00309	767.4739384693758	56.815	0.25892	56.815	56.634	56.893	0					7	4	2	0	0	0	0.36627	1	21860	21860		0.35063	0.35063	1	8216700	+		26779	16908	17085	17176	25707	25707					0.18251923015986904
QWRRREVQWR	10	Unmodified	_QWRRREVQWR_					0	0	0			REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF	REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF	MSMS	HCT116MG_D190212_S1	1	750.4127807617188	2	750.408175	1498.8018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.358	1	44.358	43.858	44.858	0								0	0	0	0.96937	1	16780	16780		0.40072	0.050084	1		+		26780	16160	17086	17177	25708	25708					0.07234791439918808
QWRRRRRRRKR	11	Unmodified	_QWRRRRRRRKR_					0	0	0			REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF	REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF	MSMS	HCT116MG_D190212_S3	3	855.5304565429688	2	855.53343	1709.05231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.153	1	56.874	56.374	57.374	-0.27913								0	0	0	0.96208	1	21713	21713		0	0	1		+		26781	16001	17087	17178	25709	25709					0.22614233275885454
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	721.4223022460938	2	721.421617	1440.82868	0.81887	0.00059075	0.2265	0.0001634	1.0454	0.00075415	721.4215827003254	52.547	0.61726	52.547	52.125	52.742	0					32	11	4	0	0	0	0.74191	1	20135	20135		1.1933	1.1933	1	49063000	+		26782	14991	17088	17179	25710	25710					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	481.28326416015625	3	481.283503	1440.82868	0.27949	0.00013451	0.31322	0.00015075	0.59271	0.00028526	481.28353268243956	53.812	1.9443	53.812	52.845	54.79	0					117	37	4	0	0	0	0.74191	3	20396	20396;20633;20872		0.45452	0.45452	1	372900000	+		26783	14991	17088	17179	25711;25712;25713	25711					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	721.421875	2	721.421617	1440.82868	0.88506	0.0006385	0.02236	1.6131E-05	0.90742	0.00065463	721.4215140094672	53.86	1.8915	53.86	53.153	55.044	0					108	36	4	0	0	0	0.74191	1	20634	20634		2.7352	2.7352	1	408600000	+		26784	14991	17088	17179	25714	25714					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	481.283935546875	3	481.283503	1440.82868	0.19249	9.2642E-05	0.17851	8.5913E-05	0.371	0.00017856	481.2834528906087	54.59	1.7395	54.401	53.532	55.272	-0.1894					98	33	5	0	0	0	0.74191	2	20849	20849;21076		0.45452	0.45452	1	154590000	+		26785	14991	17088	17179	25715;25716	25715					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	721.422607421875	2	721.421617	1440.82868	1.0059	0.00072568	-0.10887	-7.8539E-05	0.89703	0.00064714	721.4213960610496	54.564	1.4827	54.374	53.687	55.17	-0.1894					85	28	4	0	0	0	0.74191	1	20853	20853		4.897	4.897	1	155290000	+		26786	14991	17088	17179	25717	25717					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	481.61785888671875	3	481.283503	1440.82868	0.34066	0.00016395	-0.0006955	-3.3473E-07	0.33996	0.00016362	481.2834254369364	54.752	1.1987	54.429	53.723	54.922	-0.32348					48	22	3	0	0	0	0.74191	1	20266	20266		0.45452	0.45452	1	15745000	+		26787	14991	17088	17179	25718	25718					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	721.421617	1440.82868	1.0455	0.00075423	0.039943	2.8816E-05	1.0854	0.00078305	721.4211063315959	52.743	0.15496	52.556	52.451	52.606	-0.18725	0.004467	-0.00025396	NaN	1.1933	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3574300	+		26788	14991	17088	17179							0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	481.283503	1440.82868	0.19249	9.2642E-05	0.17851	8.5913E-05	0.371	0.00017856	481.2834528906087	54.59	1.7395	54.401	53.532	55.272	-0.1894	-0.013087	0.0001198	NaN	0.45452	98	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154590000	+		26789	14991	17088	17179							0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	481.283503	1440.82868	0.19684	9.4736E-05	-0.1326	-6.3821E-05	0.064236	3.0916E-05	481.28336631467147	54.708	0.78443	54.412	54.086	54.87	-0.29587	-0.0016875	-0.0003294	NaN	0.45452	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2669800	+		26790	14991	17088	17179							0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	481.283503	1440.82868	0.34066	0.00016395	-0.0006955	-3.3473E-07	0.33996	0.00016362	481.2834254369364	54.752	1.1987	54.429	53.723	54.922	-0.32348	0.014774	-0.00013895	NaN	0.45452	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15745000	+		26791	14991	17088	17179							0.12589900051102632
QWSSPHPGWLG	11	Unmodified	_QWSSPHPGWLG_					0	0	0			REV__SLC2A6|p.L148Sfs*60|1|0.12|ENSG00000160326|chr9:133477056-133477056|C/-|frameshift_variant	REV__SLC2A6|p.L148Sfs*60|1|0.12|ENSG00000160326|chr9:133477056-133477056|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	417.8678283691406	3	417.868362	1250.58326	0.14562	6.0852E-05	-0.4659	-0.00019469	-0.32028	-0.00013383	417.86807438051846	20.643	0.26036	20.643	20.488	20.748	0					7	4	2	0	0	0	0.7259	1	7244	7244		6.6235	6.6235	1	3766600	+		26792	17525	17089	17180	25719	25719					-0.03201237922235123
QWTLHVTRP	9	Unmodified	_QWTLHVTRP_					0	0	0			REV__COL20A1|p.P560Rfs*9|2|0.11|ENSG00000101203|chr20:63311925-63311925|C/-|frameshift_variant	REV__COL20A1|p.P560Rfs*9|2|0.11|ENSG00000101203|chr20:63311925-63311925|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	570.3121948242188	2	569.311815	1136.60908	0.3204	0.00018241	-1.458	-0.00083007	-1.1376	-0.00064767	569.3112362865969	32.222	0.4683	31.943	31.682	32.15	-0.27841					16	8	3	0	0	0	0.61923	1	11773	11773		10.074	2.1638	1	28574000	+		26793	10229	17090	17181	25720	25720					0.04623656320018199
QWTLRVLGM	9	Unmodified	_QWTLRVLGM_					0	0	0		ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MSMS	HCT116MG_D190212_S1	1	552.3063354492188	2	552.305144	1102.59573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.989	1	48.989	48.489	49.489	0								0	0	0	0.76902	1	18656	18656		4.3292	0	1				26794	8354	17091	17182	25721	25721					0.04854082216434108
QWYLWRKRKRE	11	Unmodified	_QWYLWRKRKRE_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	824.9623413085938	2	824.962783	1647.91101	0.81913	0.00067575	-1.3018	-0.0010739	-0.48268	-0.00039819	824.9618212659143	46.255	0.36047	46.152	45.913	46.274	-0.10291					15	6	3	0	0	0	0.74191	1	17636	17636		1.3295	1.3295	1	30269000	+		26795	13511	17092	17183	25722	25722					0.11297377339383274
QWYLWRKRKRE	11	Unmodified	_QWYLWRKRKRE_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MULTI-SECPEP	HCT116MG_D190212_S2	2	824.4859619140625	2	824.962783	1647.91101	0.81913	0.00067575	-1.3018	-0.0010739	-0.48268	-0.00039819	824.9618212659143	46.255	0.36047	46.152	45.913	46.274	-0.10291					15	6	3	0	0	0	0.36565	1	17606	17606		3.2813	3.2813	1	30269000	+		26796	13511	17092	17183	25723	25723					0.11297377339383274
QYFWWMMHDRK	11	Unmodified	_QYFWWMMHDRK_					0	0	0			REV__ENST00000497113.1_1_1:8025465-8030966:+|nuORF	REV__ENST00000497113.1_1_1:8025465-8030966:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	814.3677368164062	2	814.368481	1626.72241	0.88061	0.00071714	-2.3364	-0.0019027	-1.4557	-0.0011855	814.3664157188706	19.685	0.19826	19.492	19.382	19.58	-0.19368					5	3	2	0	0	0	0.74191	1	6709	6709		2.7352	1.5419	1	1923800	+		26797	16097	17093	17184	25724	25724					-0.06588359620764095
QYGQRCYCQY	10	Unmodified	_QYGQRCYCQY_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MSMS	HCT116MG_D190212_S3	3	656.2667846679688	2	656.26589	1310.51723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.486	1	35.186	34.686	35.686	-0.29922								0	0	0	0.94107	1	13094	13094		6.7232	0.51738	1		+		26798	12928	17094	17185	25725	25725					-0.1256113815095432
QYGWGPAAA	9	Unmodified	_QYGWGPAAA_					0	0	0			REV__ENST00000589225.5_1_17:76793370-76793733:-|nuORF	REV__ENST00000589225.5_1_17:76793370-76793733:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	460.71636962890625	2	460.716685	919.418816	0.033944	1.5639E-05	-0.24408	-0.00011245	-0.21013	-9.6812E-05	460.71649915302476	12.295	0.18672	12.006	11.914	12.101	-0.28953					11	8	2	0	0	0	0.65706	1	4018	4018		7.9102	2.1783	1	535270	+		26799	16678	17095	17186	25726	25726					-0.04411630342212902
QYHSIRARF	9	Unmodified	_QYHSIRARF_					0	0	0			REV__ENST00000406540.5_1_2:27885036-27886281:-|nuORF	REV__ENST00000406540.5_1_2:27885036-27886281:-|nuORF	MSMS	HCT116MG_D190212_S4	4	393.21112060546875	3	393.212351	1176.61522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.77	1	45.398	44.898	45.898	-0.37206								0	0	0	0.76809	1	16896	16896		7.609	4.5367	1		+		26800	15415	17096	17187	25727	25727					0.03398174551534794
QYSFYYSV	8	Unmodified	_QYSFYYSV_					0	0	0			REV__nc|ENSG00000108684|Q16515|ASIC2	REV__nc|ENSG00000108684|Q16515|ASIC2	MULTI-MSMS	HCT116MG_D190212_S2	2	528.737060546875	2	528.737283	1055.46001	0.39205	0.00020729	-0.87584	-0.00046309	-0.48378	-0.00025579	528.7367072193456	45.426	0.25767	45.334	45.205	45.462	-0.092472					5	4	2	0	0	0	0.73076	1	17304	17304		19.439	1.304	1	13298000	+		26801	17103	17097	17188	25728	25728					-0.06549914093375264
RAAPGAEF	8	Unmodified	_RAAPGAEF_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S1	1	409.7115478515625	2	409.711402	817.408252	0.15928	6.5257E-05	0.060396	2.4745E-05	0.21967	9.0002E-05	409.7112926446924	28.242	0.52633	28.242	28.008	28.535	0					21	9	3	0	0	0	0.31873	1	10263	10263		57.471	34.323	1	32668000			26802	3974	17098	17189	25729	25729					-0.0077561299663102545
RAAPGAEF	8	Unmodified	_RAAPGAEF_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S1	1	818.416015625	1	818.415528	817.408252	1.0737	0.00087876	-0.25438	-0.00020819	0.81936	0.00067057	818.4150458866669	28.259	0.36838	28.259	28.06	28.429	0					11	6	2	0	0	0	0.060005	1	10286	10286		112.59	49.03	1	9357900			26803	3974	17098	17189	25730	25730					-0.0077561299663102545
RAAPGAEF	8	Unmodified	_RAAPGAEF_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S2	2	409.7113952636719	2	409.711402	817.408252	-0.19579	-8.0219E-05	0.4339	0.00017778	0.23811	9.7557E-05	409.7116239121009	28.883	0.40911	28.567	28.352	28.761	-0.31613					12	7	2	0	0	0	0.3916	1	10570	10570		50.855	27.707	1	26860000			26804	3974	17098	17189	25731	25731					-0.0077561299663102545
RACWRRHFSQ	10	Unmodified	_RACWRRHFSQ_					0	0	0		ENST00000545177.4_1_6:2858153-2876648:-|nuORF;ENST00000420981.2_1_6:2855770-2876648:-|nuORF	ENST00000545177.4_1_6:2858153-2876648:-|nuORF	ENST00000545177.4_1_6:2858153-2876648:-|nuORF	MSMS	HCT116MG_D190212_S1	1	673.8370971679688	2	673.835997	1345.65744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.117	1	58.117	57.617	58.617	0								0	0	0	0.95648	1	22378	22378		3.2813	0	1				26805	7786	17099	17190	25732	25732					-0.0015617331171142723
RADDARQL	8	Unmodified	_RADDARQL_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000114353|P04899-6|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MSMS	HCT116MG_D190212_S2	2	472.7490234375	2	472.749047	943.483542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.655	1	19.28	18.78	19.78	-0.37503								0	0	0	0.70963	1	6827	6827		29.841	0.759	1				26806	2983;2415	17100	17191	25733	25733					0.009539444638107852
RADDARQLF	9	Unmodified	_RADDARQLF_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000114353|P04899-6|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2833251953125	2	546.283254	1090.55196	0.51166	0.00027951	-0.21287	-0.00011629	0.29879	0.00016322	546.2830616696018	35.656	0.46265	35.514	35.283	35.746	-0.14245					17	8	4	0	0	0	0.07649	1	13311	13311		67.838	35.533	1	71309000			26807	2983;2415	17101	17192	25734	25734					0.010301890436494432
RADDARQLF	9	Unmodified	_RADDARQLF_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000114353|P04899-6|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MSMS	HCT116MG_D190212_S3	3	546.2837524414062	2	546.283254	1090.55196	0.55806	0.00030486	0.17437	9.5256E-05	0.73243	0.00040012	546.2833347962279	35.806	0.23773	35.505	35.388	35.626	-0.30042					8	5	2	0	0	0	0.16686	1	13228	13228		55.235	21.047	1	18129000			26808	2983;2415	17101	17192	25735	25735					0.010301890436494432
RADDARQLF	9	Unmodified	_RADDARQLF_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000114353|P04899-6|GNAI2;nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	546.283254	1090.55196	0.63257	0.00034556	-0.19663	-0.00010741	0.43594	0.00023815	546.2830566134228	35.527	0.25811	35.527	35.371	35.63	0	0.0072424	-0.00013437	NaN	67.838	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8129600			26809	2983;2415	17101	17192							0.010301890436494432
RADGNFLLY	9	Unmodified	_RADGNFLLY_					0	0	0		ENST00000483374.1_1_22:45593059-45593908:-|nuORF;ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930	ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000483374.1_1_22:45593059-45593908:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	534.7771606445312	2	534.777274	1067.53999	0.18059	9.6574E-05	0.063317	3.3861E-05	0.24391	0.00013044	534.7772213015858	50.463	0.20574	50.463	50.368	50.574	0					5	3	2	0	0	0	0.16143	1	19274	19274		57.722	13.315	1	9288100			26810	1699	17102	17193	25736	25736					0.00892572300494976
RADGNFLLY	9	Unmodified	_RADGNFLLY_					0	0	0		ENST00000483374.1_1_22:45593059-45593908:-|nuORF;ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930	ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000483374.1_1_22:45593059-45593908:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	534.777099609375	2	534.777274	1067.53999	0.53443	0.0002858	-0.21868	-0.00011694	0.31575	0.00016886	534.7772709066695	50.594	0.31346	50.422	50.245	50.558	-0.1719					11	5	3	0	0	0	0.25384	1	19401	19401		38.176	2.1314	1	37155000			26811	1699	17102	17193	25737	25737					0.00892572300494976
RADGNFLLY	9	Unmodified	_RADGNFLLY_					0	0	0		ENST00000483374.1_1_22:45593059-45593908:-|nuORF;ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930	ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000483374.1_1_22:45593059-45593908:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	534.777274	1067.53999	0.53443	0.0002858	-0.21868	-0.00011694	0.31575	0.00016886	534.7772709066695	50.594	0.31346	50.422	50.245	50.558	-0.1719	-0.044578	-2.814E-05	NaN	57.722	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37155000			26812	1699	17102	17193							0.00892572300494976
RADPEAGLLLY	11	Unmodified	_RADPEAGLLLY_					0	0	0		nc|ENSG00000138346|P51530-2|DNA2;DNA2|p.L697Ffs*28|1|0.35|ENSG00000138346|chr10:68430553-68430554|-/A|frameshift_variant;nc|ENSG00000138346|P51530-3|DNA2;nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-2|DNA2	nc|ENSG00000138346|P51530-2|DNA2	MULTI-MSMS	HCT116MG_D190212_S1	1	609.329833984375	2	609.32987	1216.64519	0.32799	0.00019986	0.26104	0.00015906	0.58903	0.00035891	609.3300515835402	51.117	0.25874	51.117	50.936	51.194	0					9	4	3	0	0	0	0.41923	1	19534	19534		53.317	18.385	1	36320000			26813	696	17103	17194	25738	25738					0.045530687062409925
RADPEAGLLLY	11	Unmodified	_RADPEAGLLLY_					0	0	0		nc|ENSG00000138346|P51530-2|DNA2;DNA2|p.L697Ffs*28|1|0.35|ENSG00000138346|chr10:68430553-68430554|-/A|frameshift_variant;nc|ENSG00000138346|P51530-3|DNA2;nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-2|DNA2	nc|ENSG00000138346|P51530-2|DNA2	MULTI-MSMS	HCT116MG_D190212_S2	2	609.330322265625	2	609.32987	1216.64519	0.55134	0.00033594	0.030459	1.8559E-05	0.58179	0.0003545	609.3298160262833	51.242	0.36131	51.063	50.862	51.223	-0.17868					19	6	4	0	0	0	0.034456	1	19650	19650		110.79	58.524	1	248110000			26814	696	17103	17194	25739	25739					0.045530687062409925
RADPEAGLLLY	11	Unmodified	_RADPEAGLLLY_					0	0	0		nc|ENSG00000138346|P51530-2|DNA2;DNA2|p.L697Ffs*28|1|0.35|ENSG00000138346|chr10:68430553-68430554|-/A|frameshift_variant;nc|ENSG00000138346|P51530-3|DNA2;nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-2|DNA2	nc|ENSG00000138346|P51530-2|DNA2	MULTI-MSMS	HCT116MG_D190212_S3	3	609.3298950195312	2	609.32987	1216.64519	0.45385	0.00027655	0.59604	0.00036318	1.0499	0.00063973	609.3300736633138	51.503	0.31461	51.191	51.067	51.382	-0.31166					10	5	3	0	0	0	0.61097	2	19453	19428;19453		34.222	14.86	1	11910000			26815	696	17103	17194	25740;25741	25741					0.045530687062409925
RAEKQKRKKW	10	Unmodified	_RAEKQKRKKW_					0	0	0		BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant	BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant	BAZ1B|p.E800Kfs*16|1|0.08|ENSG00000009954|chr7:73477067-73477067|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	679.4115600585938	2	679.412395	1356.81024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.337	1	49.183	48.683	49.683	-0.15405								0	0	0	0.92917	1	18879	18879		9.3831	6.3879	1				26816	254	17104	17195	25742	25742					0.1461034535655017
RAERPAAPA	9	Unmodified	_RAERPAAPA_					0	0	0			REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	469.76190185546875	2	469.761958	937.509363	0.23398	0.00010991	-0.052032	-2.4442E-05	0.18195	8.5472E-05	469.76183147622004	17.51	0.5225	17.161	16.821	17.343	-0.34933					20	9	3	0	0	0	0.14171	1	5932	5932		49.933	15.001	1	27682000	+		26817	15556	17105	17196	25743	25743					0.03810838706067443
RAERPAAPA	9	Unmodified	_RAERPAAPA_					0	0	0			REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	469.76190185546875	2	469.761958	937.509363	0.14741	6.9248E-05	0.024368	1.1447E-05	0.17178	8.0696E-05	469.76184301990315	16.185	0.51986	16.271	15.977	16.497	0.085423					22	9	3	0	0	0	0.14171	1	5315	5315		49.933	3.912	1	6136100	+		26818	15556	17105	17196	25744	25744					0.03810838706067443
RAERPAAPA	9	Unmodified	_RAERPAAPA_					0	0	0			REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	469.761958	937.509363	0.34535	0.00016223	-0.11055	-5.193E-05	0.2348	0.0001103	469.76185971641036	16.935	0.31288	16.935	16.733	17.046	0	-0.11298	-4.5076E-05	NaN	49.933	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1750500	+		26819	15556	17105	17196							0.03810838706067443
RAERPAAPA	9	Unmodified	_RAERPAAPA_					0	0	0			REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	469.761958	937.509363	0.23398	0.00010991	-0.052032	-2.4442E-05	0.18195	8.5472E-05	469.76183147622004	17.51	0.5225	17.161	16.821	17.343	-0.34933	0.11298	9.8996E-06	NaN	49.933	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27682000	+		26820	15556	17105	17196							0.03810838706067443
RAERPAAPA	9	Unmodified	_RAERPAAPA_					0	0	0			REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	REV__ENST00000426537.1_1_21:47705694-47705769:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	469.761958	937.509363	-0.45958	-0.00021589	0.39722	0.0001866	-0.062366	-2.9297E-05	469.7620341416589	16.626	0.38451	16.46	16.171	16.556	-0.16664	0.094331	0.00022668	NaN	49.933	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1555300	+		26821	15556	17105	17196							0.03810838706067443
RAETEALTA	9	Unmodified	_RAETEALTA_					0	0	0			REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	481.2505798339844	2	481.251089	960.487624	0.15405	7.4138E-05	-0.70745	-0.00034046	-0.5534	-0.00026632	481.25082145898165	27.308	0.26046	27.308	27.125	27.386	0					7	4	2	0	0	0	0.26536	1	9917	9917		34.402	0	1	6935100	+		26822	15410	17106	17197	25745	25745					0.005799891668402779
RAETEALTA	9	Unmodified	_RAETEALTA_					0	0	0			REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	481.251708984375	2	481.251089	960.487624	0.20542	9.8858E-05	0.21267	0.00010235	0.41809	0.0002012	481.2511202791623	27.766	0.35946	27.424	27.243	27.602	-0.34201					10	6	3	0	0	0	0.071914	1	10093	10093		63.961	10.128	1	69458000	+		26823	15410	17106	17197	25746	25746					0.005799891668402779
RAETEALTA	9	Unmodified	_RAETEALTA_					0	0	0			REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	481.25115966796875	2	481.251089	960.487624	0.38588	0.0001857	-0.14222	-6.8445E-05	0.24365	0.00011726	481.25095214563225	27.627	0.52	27.439	27.205	27.725	-0.18847					14	9	3	0	0	0	0.10244	1	9966	9966		57.722	11.701	1	47344000	+		26824	15410	17106	17197	25747	25747					0.005799891668402779
RAETEALTA	9	Unmodified	_RAETEALTA_					0	0	0			REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	481.25091552734375	2	481.251089	960.487624	0.27403	0.00013188	-0.25539	-0.00012291	0.018639	8.9702E-06	481.2508945977389	27.797	0.40594	27.476	27.304	27.71	-0.32157					15	7	3	0	0	0	0.1935	1	9969	9969		41.956	2.0059	1	22112000	+		26825	15410	17106	17197	25748	25748					0.005799891668402779
RAETEALTA	9	Unmodified	_RAETEALTA_					0	0	0			REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	481.251089	960.487624	0.15405	7.4138E-05	-0.70745	-0.00034046	-0.5534	-0.00026632	481.25082145898165	27.308	0.26046	27.308	27.125	27.386	0	-0.10368	-0.00055734	NaN	63.961	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6935100	+		26826	15410	17106	17197							0.005799891668402779
RAETEALTA	9	Unmodified	_RAETEALTA_					0	0	0			REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	REV__ENST00000405746.1_1_6:72295335-72295494:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	481.251089	960.487624	0.38588	0.0001857	-0.14222	-6.8445E-05	0.24365	0.00011726	481.25095214563225	27.627	0.52	27.439	27.205	27.725	-0.18847	0.027269	-1.331E-05	NaN	63.961	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47344000	+		26827	15410	17106	17197							0.005799891668402779
RAGGCIVP	8	Unmodified	_RAGGCIVP_					0	0	0			REV__ENST00000419895.3_1_11:112161114-112161165:+|nuORF	REV__ENST00000419895.3_1_11:112161114-112161165:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	772.4146728515625	1	772.41342	771.406143	0.94074	0.00072664	-0.15207	-0.00011746	0.78867	0.00060918	772.4132301359238	26.814	0.73372	26.462	26.241	26.975	-0.35254					20	13	2	0	0	0	0.40466	1	9715	9715		49.669	6.7009	1	19719000	+		26828	15513	17107	17198	25749	25749					0.011296349939129868
RAGGCIVP	8	Unmodified	_RAGGCIVP_					0	0	0			REV__ENST00000419895.3_1_11:112161114-112161165:+|nuORF	REV__ENST00000419895.3_1_11:112161114-112161165:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	386.7103271484375	2	386.710348	771.406143	0.017787	6.8784E-06	0.56584	0.00021882	0.58363	0.0002257	386.710295530588	26.796	1.3514	26.444	26.189	27.54	-0.35254					58	25	4	0	0	0	0.60268	1	9915	9915		32.117	0	1	68775000	+		26829	15513	17107	17198	25750	25750					0.011296349939129868
RAGGCIVP	8	Unmodified	_RAGGCIVP_					0	0	0			REV__ENST00000419895.3_1_11:112161114-112161165:+|nuORF	REV__ENST00000419895.3_1_11:112161114-112161165:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	387.2601623535156	2	386.710348	771.406143	0.018072	6.9886E-06	-0.02305	-8.9138E-06	-0.0049782	-1.9251E-06	386.7102255845882	26.534	0.93737	26.385	26.151	27.088	-0.14924					32	17	2	0	0	0	0.81097	1	9711	9711		10.183	0.83596	1	5940400	+		26830	15513	17107	17198	25751	25751					0.011296349939129868
RAHRDWYHR	9	Unmodified	_RAHRDWYHR_					0	0	0		nc|ENSG00000110536|Q8WUK0-2|PTPMT1;nc|ENSG00000110536|Q8WUK0-3|PTPMT1;ENSG00000110536|ENST00000326674|PTPMT1	nc|ENSG00000110536|Q8WUK0-2|PTPMT1	nc|ENSG00000110536|Q8WUK0-2|PTPMT1	MSMS	HCT116MG_D190212_S4	4	432.8853454589844	3	432.88675	1295.63842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.077	1	13.916	13.416	14.416	-0.16089								0	0	0	0.77019	1	4442	4442		0.23584	0.076522	1				26831	2252	17108	17199	25752	25752					0.0024261338885480654
RAIAVYRDASI	11	Unmodified	_RAIAVYRDASI_					0	0	0			REV__ENSG00000184451|ENST00000332438|CCR10	REV__ENSG00000184451|ENST00000332438|CCR10	MSMS	HCT116MG_D190212_S4	4	412.20196533203125	3	412.234933	1233.68297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.518	1	58.235	57.735	58.735	-0.28305								0	0	0	0.95366	1	21996	21996		4.4062	1.9714	1		+		26832	13799	17109	17200	25753	25753					0.07547579691708961
RAKAKSRS	8	Unmodified	_RAKAKSRS_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6	nc|ENSG00000246705|Q9BTM1-2|H2AJ	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MSMS	HCT116MG_D190212_S1	1	452.27789306640625	2	452.277775	902.540997	-0.020008	-9.0494E-06	0.11975	5.416E-05	0.099741	4.511E-05	452.27774634801835	42.99	1.9694	42.99	41.966	43.936	0					88	37	4	0	0	0	0.8672	1	15958	15958		2.3027	0	1	66653000			26833	5603	17110	17201	25754	25754					0.08582831460034868
RAKAKSRS	8	Unmodified	_RAKAKSRS_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6	nc|ENSG00000246705|Q9BTM1-2|H2AJ	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MSMS	HCT116MG_D190212_S4	4	452.23492431640625	2	452.277775	902.540997	0.33306	0.00015063	-0.10351	-4.6814E-05	0.22955	0.00010382	452.27767249976506	41.749	1.0012	41.372	41.252	42.253	-0.37637					43	26	2	0	0	0	0.8672	1	15425	15425		2.3027	0	1	7440300			26834	5603	17110	17201	25755	25755					0.08582831460034868
RAKAKSRS	8	Unmodified	_RAKAKSRS_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6	nc|ENSG00000246705|Q9BTM1-2|H2AJ	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MSMS	HCT116MG_D190212_S4	4	452.2779541015625	2	452.277775	902.540997	0.29972	0.00013556	-0.024712	-1.1177E-05	0.27501	0.00012438	452.2776774927716	43.84	1.3581	43.466	42.813	44.171	-0.37433					80	40	3	0	0	0	0.8672	1	15978	15978		2.3027	0	1	23643000			26835	5603	17110	17201	25756	25756					0.08582831460034868
RAKAKSRS	8	Unmodified	_RAKAKSRS_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6	nc|ENSG00000246705|Q9BTM1-2|H2AJ	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MSMS	HCT116MG_D190212_S4	4	452.278076171875	2	452.277775	902.540997	0.35464	0.00016039	-0.10002	-4.5235E-05	0.25462	0.00011516	452.2775946720427	44.961	1.0933	44.588	44.459	45.552	-0.37326					36	25	2	0	0	0	0.86858	1	16903	16903		2.0598	0	1	4343100			26836	5603	17110	17201	25757	25757					0.08582831460034868
RAKAKSRS	8	Unmodified	_RAKAKSRS_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6	nc|ENSG00000246705|Q9BTM1-2|H2AJ	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	452.277775	902.540997	0.32379	0.00014645	-0.12844	-5.8091E-05	0.19535	8.8354E-05	452.27751373788186	44.744	0.7822	44.659	44.274	45.056	-0.084801	0.035627	-2.1093E-05	NaN	2.0598	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8901900			26837	5603	17110	17201							0.08582831460034868
RAKAKSRS	8	Unmodified	_RAKAKSRS_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6	nc|ENSG00000246705|Q9BTM1-2|H2AJ	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	452.277775	902.540997	0.35464	0.00016039	-0.10002	-4.5235E-05	0.25462	0.00011516	452.2775946720427	44.961	1.0933	44.588	44.459	45.552	-0.37326	-0.035627	4.6182E-06	NaN	2.0598	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4343100			26838	5603	17110	17201							0.08582831460034868
RAKGRLTA	8	Unmodified	_RAKGRLTA_					0	0	0			REV__ENSG00000157303|ENST00000375472|SUSD3	REV__ENSG00000157303|ENST00000375472|SUSD3	MULTI-MSMS	HCT116MG_D190212_S4	4	437.2761535644531	2	436.774868	871.535184	0.24645	0.00010764	-0.4635	-0.00020245	-0.21705	-9.4804E-05	436.77475031461614	52.168	0.98563	51.823	51.571	52.556	-0.34538					25	18	2	0	0	0	0.88026	1	19554	19554		0	0	1	4631700	+		26839	12749	17111	17202	25758	25758					0.09427732948347511
RAKKRGGS	8	Unmodified	_RAKKRGGS_					0	0	0		ENST00000310015.10_1_2:174829909-174830263:-|nuORF	ENST00000310015.10_1_2:174829909-174830263:-|nuORF	ENST00000310015.10_1_2:174829909-174830263:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	430.26446533203125	2	430.264668	858.514782	0.1035	4.4532E-05	0.054217	2.3328E-05	0.15772	6.786E-05	430.26459794679914	41.546	2.0506	41.546	40.487	42.538	0					93	39	3	0	0	0	0.87576	1	15913	15913		0.79363	0	1	61425000			26840	7047	17112	17203	25759	25759					0.07986562288567711
RAKKRGGS	8	Unmodified	_RAKKRGGS_					0	0	0		ENST00000310015.10_1_2:174829909-174830263:-|nuORF	ENST00000310015.10_1_2:174829909-174830263:-|nuORF	ENST00000310015.10_1_2:174829909-174830263:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	430.2644958496094	2	430.264668	858.514782	0.091403	3.9328E-05	-0.020805	-8.9518E-06	0.070598	3.0376E-05	430.26453780410185	41.312	2.793	41.244	39.898	42.691	-0.068199					81	53	3	0	0	0	0.87635	1	15790	15790		0.69038	0	1	37410000			26841	7047	17112	17203	25760	25760					0.07986562288567711
RALFPPPPP	9	Unmodified	_RALFPPPPP_					0	0	0			REV__ENSG00000274211|ENST00000612932|SOCS7	REV__ENSG00000274211|ENST00000612932|SOCS7	MSMS	HCT116MG_D190212_S4	4	496.2880859375	2	496.28982	990.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.126	1	25.835	25.335	26.335	-0.29022								0	0	0	0.69272	1	9292	9292		19.439	4.6007	1		+		26842	14452	17113	17204	25761	25761					0.0694267189370521
RALKKKQLKRQ	11	Unmodified	_RALKKKQLKRQ_					0	0	0		ENSG00000183304|ENST00000381003|FAM9A	ENSG00000183304|ENST00000381003|FAM9A	ENSG00000183304|ENST00000381003|FAM9A	MSMS	HCT116MG_D190212_S1	1	466.3121337890625	3	466.312288	1395.91504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.681	1	14.681	14.181	15.181	0								0	0	0	0.96121	1	4823	4823		0.45452	0	1				26843	5710	17114	17205	25762	25762					0.2329146683309773
RALREIVERP	10	Unmodified	_RALREIVERP_					0	0	0			REV__ENSG00000197461|ENST00000402802|PDGFA	REV__ENSG00000197461|ENST00000402802|PDGFA	MULTI-MSMS	HCT116MG_D190212_S1	1	413.5813903808594	3	413.582444	1237.7255	-0.21663	-8.9593E-05	-0.75976	-0.00031422	-0.97639	-0.00040382	413.5820567768884	51.014	1.4442	51.014	49.905	51.349	0					48	27	2	0	0	0	0.88823	1	19447	19447		0.62683	0	1	18211000	+		26844	14074	17115	17206	25763	25763					0.11614974819917734
RALRRILGVP	10	Unmodified	_RALRRILGVP_					0	0	0		ENST00000477413.1_1_1:224544770-224545154:+|nuORF	ENST00000477413.1_1_1:224544770-224545154:+|nuORF	ENST00000477413.1_1_1:224544770-224545154:+|nuORF	MSMS	HCT116MG_D190212_S4	4	575.8795776367188	2	575.880199	1149.74584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.984	1	45.612	45.112	46.112	-0.37206								0	0	0	0.95351	1	16983	16983		3.9444	1.6417	1				26845	8211	17116	17207	25764	25764					0.17696190270407897
RALSPQSP	8	Unmodified	_RALSPQSP_					0	0	0		ENST00000392507.7_1_17:45897353-45899174:-|nuORF	ENST00000392507.7_1_17:45897353-45899174:-|nuORF	ENST00000392507.7_1_17:45897353-45899174:-|nuORF	MSMS	HCT116MG_D190212_S4	4	427.7582092285156	2	428.237784	854.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.694	1	32.315	31.815	32.815	-0.37924								0	0	0	0.8837	1	11918	11918		13.906	0	1				26846	7611	17117	17208	25765	25765					0.027963450661900424
RAPNKPPP	8	Unmodified	_RAPNKPPP_					0	0	0			REV__nc|ENSG00000004777|O14559-10|ARHGAP33	REV__nc|ENSG00000004777|O14559-10|ARHGAP33	MSMS	HCT116MG_D190212_S1	1	438.7558288574219	2	438.756144	875.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.041	1	34.041	33.541	34.541	0								0	0	0	0.8837	1	12618	12618		13.508	7.1538	1		+		26847	9978	17118	17209	25766	25766					0.05500641682749574
RAQLMPGP	8	Unmodified	_RAQLMPGP_					0	0	0			REV__ENST00000442218.2_1_12:48174732-48175212:+|nuORF	REV__ENST00000442218.2_1_12:48174732-48175212:+|nuORF	MSMS	HCT116MG_D190212_S3	3	435.2353820800781	2	435.23673	868.458907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.694	1	62.471	61.971	62.971	-0.22315								0	0	0	0.8837	1	23950	23950		0.79363	0	1		+		26848	15653	17119	17210	25767	25767					0.01941593056722013
RARAPRRREA	10	Unmodified	_RARAPRRREA_					0	0	0			REV__ENST00000493483.5_1_1:33799498-33815372:-|nuORF	REV__ENST00000493483.5_1_1:33799498-33815372:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	619.869384765625	2	619.868686	1237.72282	0.34207	0.00021204	0.6642	0.00041172	1.0063	0.00062376	619.8689516906982	50.026	0.98783	49.667	49.273	50.261	-0.35878					53	21	4	0	0	0	0.88823	1	18638	18638		1.4819	0	1	14269000	+		26849	15987	17120	17211	25768	25768					0.1134656420565534
RARAPRRREA	10	Unmodified	_RARAPRRREA_					0	0	0			REV__ENST00000493483.5_1_1:33799498-33815372:-|nuORF	REV__ENST00000493483.5_1_1:33799498-33815372:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	619.868686	1237.72282	0.50623	0.00031379	1.0785	0.00066852	1.5847	0.00098232	619.8691672827426	49.525	0.41306	49.525	49.337	49.75	0	-0.071086	0.00016783	NaN	1.4819	20	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120400000	+		26850	15987	17120	17211							0.1134656420565534
RARAPRRREA	10	Unmodified	_RARAPRRREA_					0	0	0			REV__ENST00000493483.5_1_1:33799498-33815372:-|nuORF	REV__ENST00000493483.5_1_1:33799498-33815372:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	619.868686	1237.72282	0.34207	0.00021204	0.6642	0.00041172	1.0063	0.00062376	619.8689516906982	50.026	0.98783	49.667	49.273	50.261	-0.35878	0.071086	-0.00034578	NaN	1.4819	53	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14269000	+		26851	15987	17120	17211							0.1134656420565534
RARGPGWARRR	11	Unmodified	_RARGPGWARRR_					0	0	0		ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	MSMS	HCT116MG_D190212_S4	4	447.0995178222656	3	446.92906	1337.76535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.60446	1	0.33989	-0.16011	0.83989	-0.26456								0	0	0	0.96208	1	192	192		0	0	1				26852	4853	17121	17212	25769	25769					0.10997959333849394
RARRGRRGPWA	11	Unmodified	_RARRGRRGPWA_					0	0	0			REV__ENST00000368921.4_1_1:151031777-151031999:+|nuORF	REV__ENST00000368921.4_1_1:151031777-151031999:+|nuORF	MSMS	HCT116MG_D190212_S4	4	446.9287414550781	3	446.92906	1337.76535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.98338	1	0.71882	0.21882	1.2188	-0.26456								0	0	0	0.96208	1	299	299		0	0	1		+		26853	15139	17122	17213	25770	25770					0.10997959333917606
RARRGRRGPWA	11	Unmodified	_RARRGRRGPWA_					0	0	0			REV__ENST00000368921.4_1_1:151031777-151031999:+|nuORF	REV__ENST00000368921.4_1_1:151031777-151031999:+|nuORF	MSMS	HCT116MG_D190212_S4	4	447.0995788574219	3	446.92906	1337.76535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1319	1	0.86737	0.36737	1.3674	-0.26456								0	0	0	0.96208	1	349	349		0	0	1		+		26854	15139	17122	17213	25771	25771					0.10997959333917606
RARRHKKQK	9	Unmodified	_RARRHKKQK_					0	0	0			REV__ENSG00000054118|ENST00000354618|THRAP3	REV__ENSG00000054118|ENST00000354618|THRAP3	MSMS	HCT116MG_D190212_S4	4	403.19610595703125	3	403.258406	1206.75339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.259	1	57.971	57.471	58.471	-0.28879								0	0	0	0.77018	1	21891	21891		0.26902	0.1097	1		+		26855	10631	17123	17214	25772	25772					0.15828342590680222
RARRKWRPRRQ	11	Unmodified	_RARRKWRPRRQ_					0	0	0			REV__TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant	REV__TBX3|p.S443Afs*194|1|1.0|ENSG00000135111|chr12:114674609-114674610|-/ATGGTGGCGGGGCT|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.3200073242188	3	522.65393	1564.93996	0.36676	0.00019169	0.31283	0.0001635	0.67958	0.00035519	522.6540983364605	54.506	0.56256	54.317	53.945	54.507	-0.1894					13	10	2	0	0	0	0.36629	1	21037	21037		0.40827	0.31342	1	20501000	+		26856	17620	17124	17215	25773	25773					0.18008959479038822
RARRRRKPRVL	11	Unmodified	_RARRRRKPRVL_					0	0	0		ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	MSMS	HCT116MG_D190212_S4	4	732.4891967773438	2	732.484551	1462.95455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.487	1	58.202	57.702	58.702	-0.28484								0	0	0	0.96141	1	21984	21984		0.35063	0.043601	1				26857	5700	17125	17216	25774	25774					0.24159031627186778
RASDDETLESE	11	Unmodified	_RASDDETLESE_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MSMS	HCT116MG_D190212_S1	1	417.8504943847656	3	417.849361	1250.52625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.173	1	22.173	21.673	22.673	0								0	0	0	0.86121	1	7837	7837		15.538	6.7867	1				26858	1179	17126	17217	25775	25775					-0.08898794779952368
RASGDGGG	8	Unmodified	_RASGDGGG_					0	0	0		ENST00000465590.1_1_3:170075477-170077517:+|nuORF	ENST00000465590.1_1_3:170075477-170077517:+|nuORF	ENST00000465590.1_1_3:170075477-170077517:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	676.3009033203125	1	676.300892	675.293616	0.64489	0.00043614	0.15602	0.00010551	0.80091	0.00054166	676.3008001725591	36.457	0.31759	36.457	36.257	36.574	0					9	5	2	0	0	0	0.87635	1	13593	13593		0.69038	0	1	11430000			26859	8092	17127	17218	25776	25776					-0.05701922478556298
RASLKTAIYRI	11	Unmodified	_RASLKTAIYRI_					0	0	0		MUC13-TMEM48|1|fusion;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	MUC13-TMEM48|1|fusion	MUC13-TMEM48|1|fusion	MULTI-SECPEP	HCT116MG_D190212_S1	1	645.8934326171875	2	646.395879	1290.7772	0.70776	0.0004575	3.7823	0.0024449	4.4901	0.0029024	646.3986712960407	56.428	0.67023	56.428	56.119	56.789	0					18	12	3	0	0	0	0.36423	1	21816	21816		8.1555	4.8742	1	10909000			26860	1102	17128	17219	25777	25777					0.14344718513825683
RATTHFRQHV	10	Unmodified	_RATTHFRQHV_					0	0	0			REV__ZNF416|p.I403F|1|0.4|ENSG00000083817|chr19:57572697-57572697|T/A|missense_variant	REV__ZNF416|p.I403F|1|0.4|ENSG00000083817|chr19:57572697-57572697|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	418.2284851074219	3	418.226772	1251.65849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.688	1	23.44	22.94	23.94	-0.24775								0	0	0	0.95631	1	8307	8307		3.3196	1.5774	1		+		26861	18079	17129	17220	25778	25778					0.04272364328835465
RAVCLLGK	8	Unmodified	_RAVCLLGK_					0	0	0		FSTL4|p.A118V|1|0.42|ENSG00000053108|chr5:133400794-133400794|G/A|missense_variant	FSTL4|p.A118V|1|0.42|ENSG00000053108|chr5:133400794-133400794|G/A|missense_variant	FSTL4|p.A118V|1|0.42|ENSG00000053108|chr5:133400794-133400794|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	430.26458740234375	2	430.262748	858.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.911	1	41.609	41.109	42.109	-0.30257								0	0	0	0.8837	1	15596	15596		2.3027	0	1				26862	9170	17130	17221	25779	25779					0.07602756470487293
RAVRQIRRDY	10	Unmodified	_RAVRQIRRDY_					0	0	0		tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	tr|U7SIY9|U7SIY9_FUSNUDelta-aminolevulinicaciddehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02281PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	444.9256591796875	3	444.925093	1331.75345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.011	1	30.011	29.511	30.511	0								0	0	0	0.91279	1	10991	10991		7.9454	0.91129	1				26863	18309	17131	17222	25780	25780					0.10084297800040076
RAVSGRISEL	10	Unmodified	_RAVSGRISEL_					0	0	0		nc|ENSG00000162849|Q2KJY2-2|KIF26B;KIF26B|p.A1835Pfs*41|1|0.22|ENSG00000162849|chr1:245688480-245688480|G/-|frameshift_variant;ENSG00000162849|ENST00000407071|KIF26B	nc|ENSG00000162849|Q2KJY2-2|KIF26B	nc|ENSG00000162849|Q2KJY2-2|KIF26B	MSMS	HCT116MG_D190212_S1	1	363.21234130859375	3	363.212128	1086.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.864	1	24.864	24.364	25.364	0								0	0	0	0.94107	1	8919	8919		3.5871	0	1				26864	4561	17132	17223	25781	25781					0.07471335111836197
RAVVLAHF	8	Unmodified	_RAVVLAHF_					0	0	0		ENST00000268035.10_1_15:99502740-99502965:+|nuORF	ENST00000268035.10_1_15:99502740-99502965:+|nuORF	ENST00000268035.10_1_15:99502740-99502965:+|nuORF	MSMS	HCT116MG_D190212_S1	1	456.7727966308594	2	456.774337	911.534121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.229	1	52.229	51.729	52.729	0								0	0	0	0.8837	1	19971	19971		6.3541	1.1234	1				26865	6911	17133	17224	25782	25782					0.07481518579459134
RCAGSCPA	8	Unmodified	_RCAGSCPA_					0	0	0		ENST00000513439.5_1_5:7869268-7870900:+|nuORF;ENST00000514220.5_3_5:7869268-7875415:+|nuORF	ENST00000513439.5_1_5:7869268-7870900:+|nuORF	ENST00000513439.5_1_5:7869268-7870900:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	764.3187866210938	1	764.317805	763.310528	0.57206	0.00043723	0.62794	0.00047995	1.2	0.00091718	764.3182222819348	23.378	0.62533	23.338	23.135	23.76	-0.03968					14	11	2	0	0	0	0.8506	1	8271	8271		5.2307	0.47466	1	3737900			26866	8513	17134	17225	25783	25783					-0.080594611886454
RCARAEMGGTA	11	Unmodified	_RCARAEMGGTA_					0	0	0		ENST00000377989.8_2_6:25138473-25138737:-|nuORF	ENST00000377989.8_2_6:25138473-25138737:-|nuORF	ENST00000377989.8_2_6:25138473-25138737:-|nuORF	MSMS	HCT116MG_D190212_S2	2	561.7615356445312	2	561.760775	1121.507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.414	1	19.045	18.545	19.545	-0.3695								0	0	0	0.61789	1	6730	6730		42.312	7.3804	1				26867	7534	17135	17226	25784	25784					-0.048897010855171175
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S1	1	832.240234375	1	832.239102	831.231826	0.90151	0.00075027	-1.7305	-0.0014402	-0.829	-0.00068992	832.2404313134292	0.93588	0.57681	0.93588	0.83707	1.4139	0					128	58	3	0	0	0	0.88026	1	358	358		0	0	1	843000	+		26868	12557	17136	17227	25785	25785					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S1	1	832.24169921875	1	832.239102	831.231826	0.90186	0.00075056	-0.94528	-0.00078669	-0.043419	-3.6135E-05	832.2403434996307	2.0321	0.70794	2.0321	1.7322	2.4401	0					115	71	3	0	0	0	0.88026	1	668	668		0	0	1	549140	+		26869	12557	17136	17227	25786	25786					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S1	1	832.2413330078125	1	832.239102	831.231826	0.90167	0.00075041	-1.468	-0.0012217	-0.5663	-0.0004713	832.2404593216738	2.4968	0.37718	2.4968	2.4401	2.8173	0					69	38	3	0	0	0	0.88026	1	821	821		0	0	1	439310	+		26870	12557	17136	17227	25787	25787					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S1	1	833.2415161132812	1	832.239102	831.231826	0.90182	0.00075053	-1.1168	-0.00092943	-0.21497	-0.0001789	832.2403279177482	7.0255	0.57695	7.0255	6.859	7.4359	0					132	59	3	0	0	0	0.88026	2	2126	2126;2217		0	0	1	412650	+		26871	12557	17136	17227	25788;25789	25788					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S1	1	833.2416381835938	1	832.239102	831.231826	0.9018	0.00075051	-1.0092	-0.00083988	-0.10737	-8.9361E-05	832.2403881961772	7.5782	0.52014	7.5782	7.3829	7.903	0					104	54	3	0	0	0	0.88026	1	2289	2289		0	0	1	439150	+		26872	12557	17136	17227	25790	25790					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-SECPEP	HCT116MG_D190212_S1	1	832.2407836914062	1	832.239102	831.231826	0.9018	0.00075051	-1.0092	-0.00083988	-0.10737	-8.9361E-05	832.2403881961772	7.5782	0.52014	7.5782	7.3829	7.903	0					104	54	3	0	0	0	0.33627	1	2374	2374		0	0	1	439150	+		26873	12557	17136	17227	25791	25791					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S2	2	832.2416381835938	1	832.239102	831.231826	0.6679	0.00055585	-1.0812	-0.00089983	-0.41331	-0.00034397	832.2407227789583	3.6297	0.81992	3.5676	3.0318	3.8517	-0.062129					188	76	3	0	0	0	0.88026	3	1045	1045;1130;1200		0	0	1	559210	+		26874	12557	17136	17227	25792;25793;25794	25792					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S2	2	833.2404174804688	1	832.239102	831.231826	0.66625	0.00055448	-2.2815	-0.0018988	-1.6153	-0.0013443	832.2405427856042	6.6849	0.31588	6.4876	6.3014	6.6173	-0.19725					105	33	4	0	0	0	0.88026	1	2111	2111		0	0	1	793990	+		26875	12557	17136	17227	25795	25795					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S2	2	832.668212890625	1	832.239102	831.231826	0.66711	0.00055519	-1.7092	-0.0014225	-1.0421	-0.00086728	832.2404988106351	10.803	0.60211	10.53	10.191	10.794	-0.27365					39	21	3	0	0	0	0.88026	3	3435	3435;3445;3513		0	0	1	511030	+		26876	12557	17136	17227	25796;25797;25798	25796					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S2	2	832.2415161132812	1	832.239102	831.231826	0.66818	0.00055609	-0.86402	-0.00071907	-0.19584	-0.00016299	832.240427529298	11.07	0.73523	10.792	10.566	11.301	-0.27825					66	29	3	0	0	0	0.88026	1	3555	3555		0	0	1	455830	+		26877	12557	17136	17227	25799	25799					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S2	2	833.241455078125	1	832.239102	831.231826	0.66773	0.00055571	-1.1946	-0.00099421	-0.52689	-0.0004385	832.2406734612025	11.878	1.5404	11.589	11.175	12.715	-0.28953					163	85	3	0	0	0	0.88026	4	3749	3749;3760;3967;4208		0	0	1	610080	+		26878	12557	17136	17227	25800;25801;25802;25803	25800					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S2	2	832.240966796875	1	832.239102	831.231826	0.66878	0.00055659	-0.7884	-0.00065614	-0.11962	-9.9553E-05	832.2406595120993	13.341	1.5509	13.037	12.297	13.848	-0.30453					270	141	3	0	0	0	0.88026	4	4150	4150;4316;4382;4484		0	0	1	524160	+		26879	12557	17136	17227	25804;25805;25806;25807	25804					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-SECPEP	HCT116MG_D190212_S2	2	832.2408447265625	1	832.239102	831.231826	0.66711	0.00055519	-1.7092	-0.0014225	-1.0421	-0.00086728	832.2404988106351	10.803	0.60211	10.53	10.191	10.794	-0.27365					39	21	3	0	0	0	0.33627	1	3334	3334		0	0	1	511030	+		26880	12557	17136	17227	25808	25808					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-SECPEP	HCT116MG_D190212_S2	2	832.240966796875	1	832.239102	831.231826	0.66773	0.00055571	-1.1946	-0.00099421	-0.52689	-0.0004385	832.2406734612025	11.878	1.5404	11.589	11.175	12.715	-0.28953					163	85	3	0	0	0	0.33627	1	4150	4150		0	0	1	610080	+		26881	12557	17136	17227	25809	25809					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S3	3	832.24072265625	1	832.239102	831.231826	0.86932	0.00072348	-1.5021	-0.0012501	-0.63282	-0.00052665	832.2405250671367	0.33319	0.56955	0.3941	0.27136	0.84091	0.060905					104	54	3	0	0	0	0.88026	1	209	209		0	0	1	563450	+		26882	12557	17136	17227	25810	25810					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S3	3	832.2410278320312	1	832.239102	831.231826	0.86867	0.00072294	-1.6216	-0.0013496	-0.75296	-0.00062665	832.2403795218584	1.8887	0.57104	1.9496	1.4607	2.0317	0.060905					145	60	3	0	0	0	0.88026	3	527	527;545;588		0	0	1	466380	+		26883	12557	17136	17227	25811;25812;25813	25811					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S3	3	833.241943359375	1	832.239102	831.231826	0.86868	0.00072295	-1.6259	-0.0013531	-0.75717	-0.00063015	832.2406019036976	3.0594	0.64712	3.1046	2.8503	3.4974	0.045238					143	68	3	0	0	0	0.88026	2	901	901;989		0	0	1	559740	+		26884	12557	17136	17227	25814;25815	25814					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S3	3	834.2394409179688	1	832.239102	831.231826	0.86848	0.00072278	-1.5991	-0.0013308	-0.73057	-0.00060801	832.2405714000265	6.776	0.47578	6.7899	6.4913	6.9671	0.013901					101	49	3	0	0	0	0.88026	2	2011	2011;2078		0	0	1	665890	+		26885	12557	17136	17227	25816;25817	25816					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S3	3	832.2413940429688	1	832.239102	831.231826	0.86849	0.00072279	-1.6563	-0.0013784	-0.78778	-0.00065562	832.2404582117406	8.4371	0.38461	8.4577	8.2559	8.6405	0.020599					85	40	3	0	0	0	0.88026	1	2544	2544		0	0	1	786610	+		26886	12557	17136	17227	25818	25818					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S3	3	833.2426147460938	1	832.239102	831.231826	0.86944	0.00072358	-1.1628	-0.00096771	-0.29333	-0.00024412	832.2405365854073	12.909	2.0395	12.979	11.844	13.884	0.069158					152	86	3	0	0	0	0.88026	3	3930	3930;4149;4183		0	0	1	482410	+		26887	12557	17136	17227	25819;25820;25821	25819					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-SECPEP	HCT116MG_D190212_S3	3	832.2408447265625	1	832.239102	831.231826	0.86944	0.00072358	-1.1628	-0.00096771	-0.29333	-0.00024412	832.2405365854073	12.909	2.0395	12.979	11.844	13.884	0.069158					152	86	3	0	0	0	0.33627	1	3943	3943		0	0	1	482410	+		26888	12557	17136	17227	25822	25822					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S4	4	832.240478515625	1	832.239102	831.231826	0.12673	0.00010547	-0.74998	-0.00062416	-0.62324	-0.00051869	832.241011941581	1.8323	0.77398	1.5678	1.2236	1.9976	-0.26456					148	70	3	0	0	0	0.88026	3	522	522;590;688		0	0	1	469400	+		26889	12557	17136	17227	25823;25824;25825	25823					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S4	4	833.2400512695312	1	832.239102	831.231826	0.12654	0.00010531	-0.68648	-0.00057132	-0.55994	-0.000466	832.2410994103885	2.3748	0.28721	2.1102	1.9976	2.2848	-0.26456					68	33	3	0	0	0	0.88026	1	742	742		0	0	1	438030	+		26890	12557	17136	17227	25826	25826					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S4	4	833.24169921875	1	832.239102	831.231826	0.12642	0.00010521	-0.80237	-0.00066777	-0.67595	-0.00056255	832.2410740705013	3.2965	0.70771	3.0319	2.664	3.3717	-0.26456					136	72	3	0	0	0	0.88026	1	1012	1012		0	0	1	416330	+		26891	12557	17136	17227	25827	25827					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S4	4	832.2413330078125	1	832.239102	831.231826	0.12658	0.00010535	-0.76118	-0.00063349	-0.6346	-0.00052814	832.2412185281315	4.3793	0.46726	4.1147	3.8567	4.3239	-0.26456					101	45	3	0	0	0	0.88026	2	1324	1324;1355		0	0	1	491730	+		26892	12557	17136	17227	25828;25829	25828					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S4	4	833.2420043945312	1	832.239102	831.231826	0.12676	0.00010549	-0.52488	-0.00043682	-0.39812	-0.00033133	832.2411162307052	6.3716	0.56642	6.1148	5.7187	6.2852	-0.25685					104	55	3	0	0	0	0.88026	2	1923	1923;1956		0	0	1	562660	+		26893	12557	17136	17227	25830;25831	25830					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MSMS	HCT116MG_D190212_S4	4	833.2423095703125	1	832.239102	831.231826	0.12709	0.00010577	-0.48071	-0.00040006	-0.35362	-0.0002943	832.2411820431983	14.172	0.5455	14.011	13.619	14.165	-0.16089					88	36	3	0	0	0	0.88026	3	4380	4380;4447;4471		0	0	1	613040	+		26894	12557	17136	17227	25832;25833;25834	25832					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-SECPEP	HCT116MG_D190212_S4	4	832.2417602539062	1	832.239102	831.231826	0.12709	0.00010577	-0.48071	-0.00040006	-0.35362	-0.0002943	832.2411820431983	14.172	0.5455	14.011	13.619	14.165	-0.16089					88	36	3	0	0	0	0.33627	1	4471	4471		0	0	1	613040	+		26895	12557	17136	17227	25835	25835					-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	832.239102	831.231826	0.90151	0.00075027	-1.7305	-0.0014402	-0.829	-0.00068992	832.2404313134292	0.93588	0.57681	0.93588	0.83707	1.4139	0	0	0	NaN	0	128	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	843000	+		26896	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	832.239102	831.231826	0.90166	0.0007504	-1.5168	-0.0012623	-0.61513	-0.00051194	832.2403407491428	3.734	0.67464	3.734	3.4094	4.0841	0	0.083194	-0.00016584	NaN	0	111	71	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466160	+		26897	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	832.239102	831.231826	0.90182	0.00075053	-1.1168	-0.00092943	-0.21497	-0.0001789	832.2403279177482	7.0255	0.57695	7.0255	6.859	7.4359	0	-0.0050499	3.7263E-05	NaN	0	132	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412650	+		26898	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	832.239102	831.231826	0.90186	0.00075056	-0.94528	-0.00078669	-0.043419	-3.6135E-05	832.2403434996307	2.0321	0.70794	2.0321	1.7322	2.4401	0	0.0014856	0.00013874	NaN	0	115	71	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549140	+		26899	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	832.239102	831.231826	0.66625	0.00055448	-2.2815	-0.0018988	-1.6153	-0.0013443	832.2405427856042	6.6849	0.31588	6.4876	6.3014	6.6173	-0.19725	-0.15113	-0.00027195	NaN	0	105	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	793990	+		26900	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	832.239102	831.231826	0.6679	0.00055585	-1.0812	-0.00089983	-0.41331	-0.00034397	832.2407227789583	3.6297	0.81992	3.5676	3.0318	3.8517	-0.062129	-0.083194	0.00019666	NaN	0	188	76	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559210	+		26901	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	832.239102	831.231826	0.66806	0.00055599	-1.1275	-0.00093834	-0.45943	-0.00038235	832.2406654751824	7.673	1.524	7.4572	6.5681	8.0922	-0.21581	-0.060512	-3.1489E-05	NaN	0	339	155	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	694190	+		26902	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	832.239102	831.231826	0.66878	0.00055659	-0.7884	-0.00065614	-0.11962	-9.9553E-05	832.2406595120993	13.341	1.5509	13.037	12.297	13.848	-0.30453	0.029147	8.4827E-05	NaN	0	270	141	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	524160	+		26903	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	832.239102	831.231826	0.66818	0.00055609	-0.86402	-0.00071907	-0.19584	-0.00016299	832.240427529298	11.07	0.73523	10.792	10.566	11.301	-0.27825	0	0	NaN	0	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455830	+		26904	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	832.239102	831.231826	0.86848	0.00072278	-1.5991	-0.0013308	-0.73057	-0.00060801	832.2405714000265	6.776	0.47578	6.7899	6.4913	6.9671	0.013901	0.15113	0.00029604	NaN	0	101	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	665890	+		26905	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	832.239102	831.231826	0.86875	0.00072301	-1.5276	-0.0012713	-0.6588	-0.00054828	832.2403711572221	10.222	1.0506	10.255	9.7257	10.776	0.032559	-0.13751	1.381E-05	NaN	0	198	98	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562780	+		26906	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	832.239102	831.231826	0.86868	0.00072295	-1.6259	-0.0013531	-0.75717	-0.00063015	832.2406019036976	3.0594	0.64712	3.1046	2.8503	3.4974	0.045238	0.036362	-0.00036179	NaN	0	143	68	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559740	+		26907	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH	HCT116MG_D190212_S3	3		1	832.239102	831.231826	0.86926	0.00072343	-1.3387	-0.0011141	-0.46948	-0.00039072	832.2403618537642	7.0217	0.2872	7.0356	6.9257	7.2129	0.013901	0.0050499	-0.00014745	NaN	0	53	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608200	+		26908	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	832.239102	831.231826	0.86867	0.00072294	-1.6216	-0.0013496	-0.75296	-0.00062665	832.2403795218584	1.8887	0.57104	1.9496	1.4607	2.0317	0.060905	-0.081034	-0.00042414	NaN	0	145	60	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466380	+		26909	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	832.239102	831.231826	0.12642	0.00010521	-0.80237	-0.00066777	-0.67595	-0.00056255	832.2410740705013	3.2965	0.70771	3.0319	2.664	3.3717	-0.26456	-0.036362	0.00032353	NaN	0	136	72	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416330	+		26910	12557	17136	17227							-0.19054096081254102
RCCCCAAC	8	Unmodified	_RCCCCAAC_					0	0	0			REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	REV__nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	832.239102	831.231826	0.12654	0.00010531	-0.68648	-0.00057132	-0.55994	-0.000466	832.2410994103885	2.3748	0.28721	2.1102	1.9976	2.2848	-0.26456	0.079549	0.00035412	NaN	0	68	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438030	+		26911	12557	17136	17227							-0.19054096081254102
RCCCCCCL	8	Unmodified	_RCCCCCCL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	HCT116MG_D190212_S2	2	906.26025390625	1	906.258123	905.250847	0.59085	0.00053546	-0.17692	-0.00016033	0.41393	0.00037513	906.2594419067177	2.8515	0.049443	2.8112	2.7948	2.8442	-0.040353					5	3	2	0	0	0	0.88026	1	922	922		0	0	1	147180			26912	9555	17137	17228	25836	25836					-0.20556882781841068
RCCCSGND	8	Unmodified	_RCCCSGND_					0	0	0		CD79A|p.R131Gfs*61|2|0.5|ENSG00000105369|chr19:41879540-41879540|C/-|frameshift_variant	CD79A|p.R131Gfs*61|2|0.5|ENSG00000105369|chr19:41879540-41879540|C/-|frameshift_variant	CD79A|p.R131Gfs*61|2|0.5|ENSG00000105369|chr19:41879540-41879540|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	857.2700805664062	1	857.269868	856.262592	0.73308	0.00062845	0.17652	0.00015133	0.9096	0.00077978	857.2697940714771	22.715	0.36481	22.715	22.481	22.845	0					11	6	2	0	0	0	0.8672	1	8050	8050		2.3027	0.4585	1	4083300			26913	377	17138	17229	25837	25837					-0.17128903170987542
RCDEDEAHLAS	11	Unmodified	_RCDEDEAHLAS_					0	0	0		ENST00000506400.1_1_5:64906824-64920129:-|nuORF;nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	ENST00000506400.1_1_5:64906824-64920129:-|nuORF	ENST00000506400.1_1_5:64906824-64920129:-|nuORF	MSMS	HCT116MG_D190212_S3	3	623.260986328125	2	623.261859	1244.50916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.614	1	35.315	34.815	35.815	-0.29922								0	0	0	0.82357	1	13135	13135		29.841	7.1043	1				26914	2396	17139	17230	25838	25838					-0.10330993866728022
RCDQCEENY	9	Unmodified	_RCDQCEENY_					0	0	0		LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant;ENSG00000135862|ENST00000258341|LAMC1	LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	LAMC1|p.T1225Kfs*5|1|0.07|ENSG00000135862|chr1:183132506-183132507|-/AAAT|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	580.2098999023438	2	580.21078	1158.40701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.363	1	25.256	24.756	25.756	-0.10618								0	0	0	0.76739	1	9051	9051		10.074	6.4774	1				26915	3377	17140	17231	25839	25839					-0.16585983210006816
RCDVWLGMTEL	11	Unmodified	_RCDVWLGMTEL_					0	0	0			REV__ENSG00000169704|ENST00000307395|GP9	REV__ENSG00000169704|ENST00000307395|GP9	MULTI-MSMS	HCT116MG_D190212_S4	4	661.81591796875	2	661.815215	1321.61588	0.68489	0.00045327	-0.60935	-0.00040328	0.075543	4.9995E-05	661.8148884714407	27.693	0.8735	27.371	26.732	27.606	-0.32157					35	16	4	0	0	0	0.72068	2	9775	9775;9944		17.443	6.6431	1	5736400	+		26916	13260	17141	17232	25840;25841	25840					-0.03206534905916669
RCDVWLGMTEL	11	Unmodified	_RCDVWLGMTEL_					0	0	0			REV__ENSG00000169704|ENST00000307395|GP9	REV__ENSG00000169704|ENST00000307395|GP9	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	661.815215	1321.61588	0.84589	0.00055982	-0.88118	-0.00058318	-0.035284	-2.3351E-05	661.8146399633141	27.627	0.88452	27.439	26.788	27.673	-0.18847	0.033728	-0.00020064	NaN	17.443	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6493900	+		26917	13260	17141	17232							-0.03206534905916669
RCEAERQGP	9	Unmodified	_RCEAERQGP_					0	0	0		ENST00000395699.3_1_7:44924651-44924900:-|nuORF	ENST00000395699.3_1_7:44924651-44924900:-|nuORF	ENST00000395699.3_1_7:44924651-44924900:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	523.251953125	2	523.245815	1044.47708	0.45159	0.00023629	-1.3508	-0.00070682	-0.89925	-0.00047053	523.2448598135794	29.261	0.26023	29.039	28.89	29.15	-0.22196					7	4	2	0	0	0	0.43775	1	10571	10571		20.454	4.6064	1	5599300			26918	7648	17142	17233	25842	25842					-0.04338316759208283
RCGGCCPD	8	Unmodified	_RCGGCCPD_					0	0	0		VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant;nc|ENSG00000173511|P49765-2|VEGFB;ENSG00000173511|ENST00000309422|VEGFB	VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	810.2695922851562	1	810.26914	809.261863	0.96858	0.00078481	-0.24849	-0.00020134	0.72009	0.00058347	810.2689230587577	24.525	0.78062	24.145	23.874	24.655	-0.38003					29	14	3	0	0	0	0.88026	1	8758	8758		0	0	1	92482000			26919	5291	17143	17234	25843	25843					-0.1503969782004333
RCGGCCPD	8	Unmodified	_RCGGCCPD_					0	0	0		VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant;nc|ENSG00000173511|P49765-2|VEGFB;ENSG00000173511|ENST00000309422|VEGFB	VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	810.26953125	1	810.26914	809.261863	0.90705	0.00073495	-0.30575	-0.00024774	0.6013	0.00048722	810.2687172169645	23.305	0.78174	23.265	22.979	23.76	-0.03968					20	14	2	0	0	0	0.88026	1	8224	8224		0	0	1	13101000			26920	5291	17143	17234	25844	25844					-0.1503969782004333
RCGGCCPD	8	Unmodified	_RCGGCCPD_					0	0	0		VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant;nc|ENSG00000173511|P49765-2|VEGFB;ENSG00000173511|ENST00000309422|VEGFB	VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	810.2695922851562	1	810.26914	809.261863	0.79322	0.00064272	-0.060158	-4.8744E-05	0.73306	0.00059398	810.2687407042773	22.777	0.4165	22.54	22.341	22.758	-0.23758					14	7	2	0	0	0	0.88026	1	7926	7926		0	0	1	7023300			26921	5291	17143	17234	25845	25845					-0.1503969782004333
RCGGCCPD	8	Unmodified	_RCGGCCPD_					0	0	0		VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant;nc|ENSG00000173511|P49765-2|VEGFB;ENSG00000173511|ENST00000309422|VEGFB	VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	VEGFB|p.K129Rfs*5|1|0.38|ENSG00000173511|chr11:64237191-64237191|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	810.27001953125	1	810.26914	809.261863	0.75138	0.00060882	-0.032991	-2.6732E-05	0.71839	0.00058209	810.2691456730896	23.258	0.88804	23.011	22.748	23.636	-0.24775					25	16	2	0	0	0	0.87635	1	8147	8147		0.69038	0.69038	1	15251000			26922	5291	17143	17234	25846	25846					-0.1503969782004333
RCKRHGKRC	9	Unmodified	_RCKRHGKRC_					0	0	0			REV__LAMB4|p.G1396C|1|0.25|ENSG00000091128|chr7:108048048-108048048|C/A|missense_variant	REV__LAMB4|p.G1396C|1|0.25|ENSG00000091128|chr7:108048048-108048048|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	381.875	3	381.874799	1142.60257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5173	1	5.5173	5.0173	6.0173	0								0	0	0	0.77025	1	1660	1660		0	0	1		+		26923	16969	17144	17235	25847	25847					0.036971166160356006
RCLRCFPQPPR	11	Unmodified	_RCLRCFPQPPR_					0	0	0		CYP4F2|p.R47C|1|0.37|ENSG00000186115|chr19:15897473-15897473|G/A|missense_variant	CYP4F2|p.R47C|1|0.37|ENSG00000186115|chr19:15897473-15897473|G/A|missense_variant	CYP4F2|p.R47C|1|0.37|ENSG00000186115|chr19:15897473-15897473|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	686.8583984375	2	686.858083	1371.70161	0.60643	0.00041653	-0.5962	-0.00040951	0.010229	7.0261E-06	686.8575836830705	22.778	0.88499	22.54	21.978	22.863	-0.23758					29	16	3	0	0	0	0.72755	1	7826	7826		19.362	9.2114	1	7651000			26924	631	17145	17236	25848	25848					0.03063094790240939
RCLRCFPQPPR	11	Unmodified	_RCLRCFPQPPR_					0	0	0		CYP4F2|p.R47C|1|0.37|ENSG00000186115|chr19:15897473-15897473|G/A|missense_variant	CYP4F2|p.R47C|1|0.37|ENSG00000186115|chr19:15897473-15897473|G/A|missense_variant	CYP4F2|p.R47C|1|0.37|ENSG00000186115|chr19:15897473-15897473|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	686.858083	1371.70161	0.46625	0.00032025	-0.43264	-0.00029716	0.033618	2.3091E-05	686.857966969407	22.91	0.52007	22.525	22.206	22.726	-0.3852	0.024672	0.00045803	NaN	19.362	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5699800			26925	631	17145	17236							0.03063094790240939
RCLRCFPQPPR	11	Unmodified	_RCLRCFPQPPR_					0	0	0		CYP4F2|p.R47C|1|0.37|ENSG00000186115|chr19:15897473-15897473|G/A|missense_variant	CYP4F2|p.R47C|1|0.37|ENSG00000186115|chr19:15897473-15897473|G/A|missense_variant	CYP4F2|p.R47C|1|0.37|ENSG00000186115|chr19:15897473-15897473|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	686.858083	1371.70161	0.60643	0.00041653	-0.5962	-0.00040951	0.010229	7.0261E-06	686.8575836830705	22.778	0.88499	22.54	21.978	22.863	-0.23758	0.040307	0.00023333	NaN	19.362	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7651000			26926	631	17145	17236							0.03063094790240939
RCLRKEVTMDC	11	Unmodified	_RCLRKEVTMDC_					0	0	0		ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	MSMS	HCT116MG_D190212_S2	2	451.8849182128906	3	451.886042	1352.6363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.99744	1	0.99118	0.49118	1.4912	-0.00626								0	0	0	0.96149	1	321	321		0.08335	0	1				26927	3670	17146	17237	25849	25849					-0.025916875177699694
RCLVIRRRWR	10	Unmodified	_RCLVIRRRWR_					0	0	0		sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2;sp|F5HDM3|UL23_HCMVMTegumentproteinUL23OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL23PE=3SV=1	sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	MSMS	HCT116MG_D190212_S1	1	471.9554443359375	3	471.95433	1412.84116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.604	1	55.604	55.104	56.104	0								0	0	0	0.96263	1	21356	21356		1.9064	0.57673	1				26928	18196	17147	17238	25850	25850					0.15125220189770516
RCMSIPVTM	9	Unmodified	_RCMSIPVTM_					0	0	0		MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant;ENSG00000125686|ENST00000300651|MED1;nc|ENSG00000125686|Q15648-3|MED1;MED1|p.G570Vfs*9|1|0.06|ENSG00000125686|chr17:39410512-39410512|C/-|frameshift_variant;MED1|p.Q744Sfs*36|1|0.7|ENSG00000125686|chr17:39409991-39409991|G/-|frameshift_variant;MED1|p.G814Afs*8|1|0.1|ENSG00000125686|chr17:39409779-39409780|CC/-|frameshift_variant;MED1|p.S616Lfs*31|1|0.21|ENSG00000125686|chr17:39410376-39410376|C/-|frameshift_variant	MED1|p.S1294Yfs*16|1|0.06|ENSG00000125686|chr17:39408340-39408341|-/T|frameshift_variant;MED1|p.S616Lfs*31|1|0.21|ENSG00000125686|chr17:39410376-39410376|C/-|frameshift_variant	MED1|p.S616Lfs*31|1|0.21|ENSG00000125686|chr17:39410376-39410376|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	519.2510375976562	2	519.250665	1036.48678	0.44581	0.00023149	0.02004	1.0406E-05	0.46585	0.00024189	519.2506583119152	47.036	0.25861	47.036	46.907	47.165	0					6	4	2	0	0	0	0.45867	1	17885	17885		19.257	1.1106	1	15260000			26929	2899;9324	17148	17239	25851	25851					-0.03000588069699006
RCRRRRRRRRL	11	Unmodified	_RCRRRRRRRRL_					0	0	0		ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MSMS	HCT116MG_D190212_S2	2	820.1437377929688	2	820.514183	1639.01381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.505	1	47.383	46.883	47.883	-0.12175								0	0	0	0.96208	1	18123	18123		0	0	1				26930	8752	17149	17240	25852	25852					0.21986604369726592
RCSKRSRT	8	Unmodified	_RCSKRSRT_					0	0	0			REV__GIGYF1|p.P25Hfs*58|1|0.31|ENSG00000146830|chr7:100688072-100688072|G/-|frameshift_variant	REV__GIGYF1|p.P25Hfs*58|1|0.31|ENSG00000146830|chr7:100688072-100688072|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	497.2710876464844	2	497.272167	992.529781	0.42098	0.00020934	-1.4791	-0.00073553	-1.0581	-0.00052618	497.2713262113187	45.581	0.31404	45.581	45.399	45.713	0					12	5	3	0	0	0	0.8672	1	17286	17286		2.3027	0	1	9620200	+		26931	16849	17150	17241	25853	25853					0.033216860942502535
RCTYRYSP	8	Unmodified	_RCTYRYSP_					0	0	0		ENST00000553879.5_1_14:24838333-24839008:+|nuORF;ENST00000556169.5_1_14:24838463-24839008:+|nuORF	ENST00000553879.5_1_14:24838333-24839008:+|nuORF	ENST00000553879.5_1_14:24838333-24839008:+|nuORF	MSMS	HCT116MG_D190212_S4	4	523.2479858398438	2	523.247826	1044.4811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.635	1	27.313	26.813	27.813	-0.32157								0	0	0	0.8837	1	9902	9902		11.64	0.81637	1				26932	8773	17151	17242	25854	25854					-0.039362272654898334
RCWWRWPRCYW	11	Unmodified	_RCWWRWPRCYW_					0	0	0		ENST00000341500.9_1_19:7267817-7293934:-|nuORF	ENST00000341500.9_1_19:7267817-7293934:-|nuORF	ENST00000341500.9_1_19:7267817-7293934:-|nuORF	MSMS	HCT116MG_D190212_S3	3	566.5957641601562	3	566.595813	1696.76561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.776	1	49.46	48.96	49.96	-0.3154								0	0	0	0.9619	1	18753	18753		0.094841	0.094841	1				26933	7220	17152	17243	25855	25855					-0.05490125052801886
RDERNQSIIV	10	Unmodified	_RDERNQSIIV_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant;ENST00000561810.1_1_15:52708302-52718136:-|nuORF	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	HCT116MG_D190212_S1	1	615.334716796875	2	615.333476	1228.6524	0.30661	0.00018867	2.3091	0.0014209	2.6157	0.0016095	615.3345873666622	50.394	0.30821	50.394	50.266	50.574	0					7	5	2	0	0	0	0.84626	1	19263	19263		8.1555	0	1	14498000			26934	6153	17153	17244	25856	25856					0.04721801306641282
RDGHWLQTTSC	11	Unmodified	_RDGHWLQTTSC_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MSMS	HCT116MG_D190212_S3	3	652.2974243164062	2	652.296036	1302.57752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.063	1	24.002	23.502	24.502	-0.061449								0	0	0	0.94012	1	8527	8527		11.495	0.67078	1		+		26935	12164	17154	17245	25857	25857					-0.0616670449621779
RDHFMEML	8	Unmodified	_RDHFMEML_					0	0	0		ENST00000478571.1_1_1:186368103-186380944:+|nuORF;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	ENST00000478571.1_1_1:186368103-186380944:+|nuORF	ENST00000478571.1_1_1:186368103-186380944:+|nuORF	MSMS	HCT116MG_D190212_S3	3	360.1654968261719	3	360.165133	1077.47357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.376	1	46.063	45.563	46.563	-0.31237								0	0	0	0.8837	1	17386	17386		1.8442	0	1				26936	4318	17155	17246	25858	25858					-0.062067028574347205
RDHFMEML	8	Unmodified	_RDHFMEML_					0	0	0		ENST00000478571.1_1_1:186368103-186380944:+|nuORF;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	ENST00000478571.1_1_1:186368103-186380944:+|nuORF	ENST00000478571.1_1_1:186368103-186380944:+|nuORF	MSMS	HCT116MG_D190212_S4	4	360.1653747558594	3	360.165133	1077.47357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.291	1	45.919	45.419	46.419	-0.37206								0	0	0	0.8837	1	17089	17089		1.8442	0	1				26937	4318	17155	17246	25859	25859					-0.062067028574347205
RDLASHRG	8	Unmodified	_RDLASHRG_					0	0	0		PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant;PXDN|p.N1190Mfs*12|1|0.22|ENSG00000130508|chr2:1648211-1648211|T/-|frameshift_variant;PXDN|p.R1242Pfs*22|1|0.07|ENSG00000130508|chr2:1644636-1644637|-/AG|frameshift_variant;PXDN|p.E1339Lfs*66|1|0.26|ENSG00000130508|chr2:1639361-1639362|-/AG|frameshift_variant;ENSG00000130508|ENST00000252804|PXDN	PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant	PXDN|p.N1194Tfs*8|1|0.25|ENSG00000130508|chr2:1648199-1648199|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	456.24395751953125	2	456.243932	910.473312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.469	1	41.401	40.901	41.901	-0.068199								0	0	0	0.8837	1	15670	15670		15.847	0	1				26938	3084	17156	17247	25860	25860					0.014493815292325962
RDLDSIEA	8	Unmodified	_RDLDSIEA_					0	0	0			REV__ENST00000567642.1_1_16:30087698-30092679:+|nuORF	REV__ENST00000567642.1_1_16:30087698-30092679:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	459.7301330566406	2	459.729989	917.445425	0.1697	7.8017E-05	-0.17731	-8.1516E-05	-0.007613	-3.4999E-06	459.72990783552916	20.695	0.3161	20.316	20.13	20.446	-0.37949					10	5	3	0	0	0	0.51336	1	7252	7252		39.957	0.0076237	1	11429000	+		26939	12576	17157	17248	25861	25861					-0.01659986241520528
RDLIKVLKWYV	11	Unmodified	_RDLIKVLKWYV_					0	0	0		DOCK4|p.K1325Nfs*6|1|0.17|ENSG00000128512|chr7:111765136-111765136|T/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000492532.1_7:111509614-111512393:-|nuORF;ENST00000476846.1_7:111503332-111846439:-|nuORF	DOCK4|p.K1325Nfs*6|1|0.17|ENSG00000128512|chr7:111765136-111765136|T/-|frameshift_variant	DOCK4|p.K1325Nfs*6|1|0.17|ENSG00000128512|chr7:111765136-111765136|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	478.7856750488281	3	478.294012	1431.86021	0.19484	9.319E-05	-0.99917	-0.0004779	-0.80433	-0.00038471	478.29374723005753	52.387	0.46277	52.387	52.125	52.587	0					19	8	3	0	0	0	0.35699	1	19930	19930		14.838	13.824	1	28769000			26940	722	17158	17249	25862	25862					0.16155035241808946
RDLKILGNP	9	Unmodified	_RDLKILGNP_					0	0	0		ENST00000599461.1_1_19:21579980-21580034:+|nuORF	ENST00000599461.1_1_19:21579980-21580034:+|nuORF	ENST00000599461.1_1_19:21579980-21580034:+|nuORF	MSMS	HCT116MG_D190212_S2	2	513.3088989257812	2	513.308741	1024.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.157	1	56.978	56.478	57.478	-0.17904								0	0	0	0.76834	1	22064	22064		6.7232	0	1				26941	9080	17159	17250	25863	25863					0.09161138088529697
RDNALTLLIK	10	Unmodified	_RDNALTLLIK_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MSMS	HCT116MG_D190212_S4	4	386.23822021484375	3	386.239796	1155.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.151	1	39.772	39.272	40.272	-0.37936								0	0	0	0.95741	1	14720	14720		3.0723	0.57378	1				26942	3675	17160	17251	25864	25864					0.12593651839847553
RDPYKNRVWVS	11	Unmodified	_RDPYKNRVWVS_					0	0	0		ENST00000479663.2_1_1:160783430-160784592:+|nuORF;nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9	ENST00000479663.2_1_1:160783430-160784592:+|nuORF	ENST00000479663.2_1_1:160783430-160784592:+|nuORF	MSMS	HCT116MG_D190212_S2	2	710.3790893554688	2	710.378217	1418.74188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.555	1	37.452	36.952	37.952	-0.10318								0	0	0	0.95113	1	14081	14081		5.7319	0.43497	1				26943	2754	17161	17252	25865	25865					0.04926055986015854
RDQRRLKKV	9	Unmodified	_RDQRRLKKV_					0	0	0		ENST00000380637.7_1_21:40834409-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	MSMS	HCT116MG_D190212_S3	3	400.2535095214844	3	400.254551	1197.74182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.676	1	52.369	51.869	52.869	-0.30639								0	0	0	0.76954	1	19919	19919		2.4985	0.75621	1				26944	7567	17162	17253	25866	25866					0.15086100776693456
RDQRRLKKV	9	Unmodified	_RDQRRLKKV_					0	0	0		ENST00000380637.7_1_21:40834409-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	MSMS	HCT116MG_D190212_S4	4	400.2540283203125	3	400.254551	1197.74182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.64	1	52.299	51.799	52.799	-0.34023								0	0	0	0.76954	1	19629	19629		2.4985	0.75621	1				26945	7567	17162	17253	25867	25867					0.15086100776693456
RDRKKRRRWRR	11	Unmodified	_RDRKKRRRWRR_					0	0	0		ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	557.787841796875	3	557.012118	1668.01452	0.4252	0.00023684	-0.3684	-0.0002052	0.056802	3.1639E-05	557.0119970120687	57.59	1.0917	57.415	56.639	57.73	-0.17493					24	20	2	0	0	0	0.36631	1	22040	22040		0.094841	0.094841	1	7597500			26946	8791	17163	17254	25868	25868					0.2072372229042685
RDRKKRRRWRR	11	Unmodified	_RDRKKRRRWRR_					0	0	0		ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	557.0120849609375	3	557.012118	1668.01452	0.44909	0.00025015	-0.49515	-0.0002758	-0.046057	-2.5655E-05	557.0116642917241	55.607	1.1105	55.32	54.669	55.779	-0.28773					45	20	3	0	0	0	0.74191	1	21072	21072		0.08335	0	1	3407600			26947	8791	17163	17254	25869	25869					0.2072372229042685
RDRKKRRRWRR	11	Unmodified	_RDRKKRRRWRR_					0	0	0		ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MSMS	HCT116MG_D190212_S4	4	557.0123901367188	3	557.012118	1668.01452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.191	1	54.874	54.374	55.374	-0.31774								0	0	0	0.9619	1	20658	20658		0.094841	0.094841	1				26948	8791	17163	17254	25870	25870					0.2072372229042685
RDRKKRRRWRR	11	Unmodified	_RDRKKRRRWRR_					0	0	0		ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	557.012118	1668.01452	0.52119	0.00029031	-0.8622	-0.00048026	-0.34101	-0.00018995	557.0115972520616	55.12	2.0938	55.12	54.128	56.222	0	-0.18516	-0.00013428	NaN	0.08335	158	40	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1992199999.9999998			26949	8791	17163	17254							0.2072372229042685
RDRKKRRRWRR	11	Unmodified	_RDRKKRRRWRR_					0	0	0		ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	557.012118	1668.01452	0.39945	0.0002225	-0.76645	-0.00042692	-0.367	-0.00020442	557.0116431679055	55.643	1.0291	55.458	55.072	56.101	-0.18565	0.15218	2.5718E-05	NaN	0.08335	77	19	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	640460000			26950	8791	17163	17254							0.2072372229042685
RDRKKRRRWRR	11	Unmodified	_RDRKKRRRWRR_					0	0	0		ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	557.012118	1668.01452	0.45207	0.00025181	-0.70587	-0.00039318	-0.25379	-0.00014137	557.0116890247233	55.636	1.0971	55.324	54.62	55.718	-0.312	0.01858	0.00012696	NaN	0.08335	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13767000			26951	8791	17163	17254							0.2072372229042685
RDRRWKEKWKI	11	Unmodified	_RDRRWKEKWKI_					0	0	0		ENST00000391743.7_1_19:54872771-54881934:-|nuORF	ENST00000391743.7_1_19:54872771-54881934:-|nuORF	ENST00000391743.7_1_19:54872771-54881934:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	533.8106079101562	3	534.310947	1599.91101	0.37987	0.00020297	1.3228	0.00070677	1.7026	0.00090973	534.3121961091557	52.264	0.30906	52.264	52.125	52.434	0					7	5	2	0	0	0	0.36627	1	20004	20004		0.094841	0.030435	1	32413000			26952	7601	17164	17255	25871	25871					0.13505377339379265
RDSELVSFEGV	11	Unmodified	_RDSELVSFEGV_					0	0	0			REV__ENST00000438197.2_1_11:85444955-85468786:-|nuORF	REV__ENST00000438197.2_1_11:85444955-85468786:-|nuORF	MSMS	HCT116MG_D190212_S1	1	619.3049926757812	2	619.306592	1236.59863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.278	1	21.278	20.778	21.778	0								0	0	0	0.85129	1	7477	7477		26.268	8.1218	1		+		26953	12180	17165	17256	25872	25872					-0.010204159157183312
RDSFRLWF	8	Unmodified	_RDSFRLWF_					0	0	0			REV__TTLL12|p.N497D|1|0.35|ENSG00000100304|chr22:43172407-43172407|T/C|missense_variant	REV__TTLL12|p.N497D|1|0.35|ENSG00000100304|chr22:43172407-43172407|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	376.1964416503906	3	376.197931	1125.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.669	1	60.52	60.02	61.02	-0.14852								0	0	0	0.8837	1	23485	23485		0.35063	0.081612	1		+		26954	18026	17166	17257	25873	25873					0.014199847742702332
RDSQETLLV	9	Unmodified	_RDSQETLLV_					0	0	0		ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	MULTI-SECPEP	HCT116MG_D190212_S3	3	530.2349853515625	2	530.785296	1059.55604	0.54917	0.00029149	0.35154	0.00018659	0.90071	0.00047808	530.7850731734991	37.484	0.31197	37.183	36.925	37.237	-0.30137					6	5	2	0	0	0	0.22506	1	13783	13783		26.268	9.3258	1	4189500			26955	852	17167	17258	25874	25874					0.028642337467317702
RDSQETLLV	9	Unmodified	_RDSQETLLV_					0	0	0		ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	MULTI-MATCH	HCT116MG_D190212_S2	2		2	530.785296	1059.55604	0.29155	0.00015475	-0.26704	-0.00014174	0.024509	1.3009E-05	530.7850630553272	37.309	0.25797	37.206	37.026	37.284	-0.10318	0.011784	-0.00031285	NaN	26.268	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14309000			26956	852	17167	17258							0.028642337467317702
RDTQYYFV	8	Unmodified	_RDTQYYFV_					0	0	0		PKD1L1|p.K1780Rfs*33|1|0.36|ENSG00000158683|chr7:47843068-47843068|T/-|frameshift_variant;PKD1L1|p.L2298Cfs*3|1|0.47|ENSG00000158683|chr7:47821148-47821148|A/-|frameshift_variant;nc|ENSG00000158683|Q8TDX9-2|PKD1L1;PKD1L1|p.R2615Lfs*97|1|0.05|ENSG00000158683|chr7:47803328-47803329|-/TTTATCA|frameshift_variant;ENSG00000158683|ENST00000289672|PKD1L1	PKD1L1|p.K1780Rfs*33|1|0.36|ENSG00000158683|chr7:47843068-47843068|T/-|frameshift_variant	PKD1L1|p.K1780Rfs*33|1|0.36|ENSG00000158683|chr7:47843068-47843068|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	546.2598876953125	2	546.261456	1090.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.602	1	43.529	43.029	44.029	-0.073376								0	0	0	0.8837	1	16537	16537		15.847	1.2655	1				26957	4386	17168	17259	25875	25875					-0.03327420453479135
RDTVPTSTLK	10	Unmodified	_RDTVPTSTLK_					0	0	0			REV__ENSG00000119403|ENST00000373896|PHF19	REV__ENSG00000119403|ENST00000373896|PHF19	MSMS	HCT116MG_D190212_S2	2	373.2128601074219	3	373.211906	1116.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.664	1	45.563	45.063	46.063	-0.1014								0	0	0	0.94698	1	17372	17372		5.4027	0	1		+		26958	11655	17169	17260	25876	25876					0.06024495672136254
RDVEELPP	8	Unmodified	_RDVEELPP_					0	0	0		ENST00000584205.5_1_17:17931933-17942433:-|nuORF	ENST00000584205.5_1_17:17931933-17942433:-|nuORF	ENST00000584205.5_1_17:17931933-17942433:-|nuORF	MSMS	HCT116MG_D190212_S2	2	478.1963806152344	2	477.748182	953.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.698	1	27.356	26.856	27.856	-0.34201								0	0	0	0.8396	1	10072	10072		19.439	1.2926	1				26959	8974	17170	17261	25877	25877					0.0032089065517766358
RDWIKLFRNLY	11	Unmodified	_RDWIKLFRNLY_					0	0	0			REV__ENST00000494268.1_1_X:11778342-11782058:+|nuORF	REV__ENST00000494268.1_1_X:11778342-11782058:+|nuORF	MSMS	HCT116MG_D190212_S2	2	762.4282836914062	2	762.42771	1522.84087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.903	1	33.726	33.226	34.226	-0.17741								0	0	0	0.9598	1	12596	12596		1.1933	0	1		+		26960	16072	17171	17262	25878	25878					0.10036078950952287
RDYFDDRYYDY	11	Unmodified	_RDYFDDRYYDY_					0	0	0			REV__ENSG00000125970|ENST00000246194|RALY	REV__ENSG00000125970|ENST00000246194|RALY	MSMS	HCT116MG_D190212_S3	3	795.8291625976562	2	795.82842	1589.64229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.994	1	47.678	47.178	48.178	-0.31596								0	0	0	0.95113	1	18039	18039		5.7319	2.4505	1		+		26961	11826	17172	17263	25879	25879					-0.12894851209239278
READFARVA	9	Unmodified	_READFARVA_					0	0	0		ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7725830078125	2	517.772522	1033.53049	0.38621	0.00019997	-0.1133	-5.8665E-05	0.2729	0.0001413	517.7725028706959	27.61	0.36119	27.268	27.088	27.449	-0.34201					11	6	3	0	0	0	0.048237	1	10047	10047		75.571	23.941	1	33595000			26962	3063	17173	17264	25880	25880					0.01506804014957197
READFARVA	9	Unmodified	_READFARVA_					0	0	0		ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	MULTI-MSMS	HCT116MG_D190212_S3	3	517.7723999023438	2	517.772522	1033.53049	0.34981	0.00018112	-0.16152	-8.3631E-05	0.18829	9.7489E-05	517.7723412659998	27.405	0.31224	27.235	27.016	27.328	-0.16933					11	5	3	0	0	0	0.035298	2	9883	9866;9883		81.915	30.285	1	9614400			26963	3063	17173	17264	25881;25882	25882					0.01506804014957197
READPQLGP	9	Unmodified	_READPQLGP_					0	0	0		nc|ENSG00000010803|Q96GD3-6|SCMH1;nc|ENSG00000010803|Q96GD3-5|SCMH1;nc|ENSG00000010803|Q96GD3-4|SCMH1;nc|ENSG00000010803|Q96GD3-3|SCMH1;nc|ENSG00000010803|Q96GD3-2|SCMH1;nc|ENSG00000010803|Q96GD3|SCMH1;ENSG00000010803|ENST00000695335|SCMH1	nc|ENSG00000010803|Q96GD3-6|SCMH1	nc|ENSG00000010803|Q96GD3-6|SCMH1	MULTI-MSMS	HCT116MG_D190212_S3	3	491.75140380859375	2	491.751256	981.487959	0.24418	0.00012007	0.95095	0.00046763	1.1951	0.00058771	491.75159312047083	26.673	0.57251	26.523	26.203	26.775	-0.14924					17	10	2	0	0	0	0.21258	1	9584	9584		39.95	0	1	4936600			26964	882	17174	17265	25883	25883					-0.0035259111327832215
REAEARLAA	9	Unmodified	_REAEARLAA_					0	0	0		ENSG00000124831|ENST00000308482|LRRFIP1;ENST00000465870.5_1_2:238536269-238629540:+|nuORF;LRRFIP2|p.I487Lfs*4|1|0.41|ENSG00000093167|chr3:37072795-37072795|T/-|frameshift_variant;LRRFIP2|p.V671Sfs*2|1|0.12|ENSG00000093167|chr3:37054455-37054456|-/T|frameshift_variant;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2	ENSG00000124831|ENST00000308482|LRRFIP1;nc|ENSG00000093167|Q9Y608-2|LRRFIP2	nc|ENSG00000093167|Q9Y608-2|LRRFIP2	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7726135253906	2	493.772522	985.530492	0.26667	0.00013167	0.075188	3.7126E-05	0.34185	0.0001688	493.77250222631767	21.199	0.41468	20.816	20.651	21.065	-0.38288					13	7	2	0	0	0	0.037825	1	7455	7455		80.676	3.8512	1	33404000			26965	2868;1595	17175	17266	25884	25884					0.037148040149304506
REAEARLAA	9	Unmodified	_REAEARLAA_					0	0	0		ENSG00000124831|ENST00000308482|LRRFIP1;ENST00000465870.5_1_2:238536269-238629540:+|nuORF;LRRFIP2|p.I487Lfs*4|1|0.41|ENSG00000093167|chr3:37072795-37072795|T/-|frameshift_variant;LRRFIP2|p.V671Sfs*2|1|0.12|ENSG00000093167|chr3:37054455-37054456|-/T|frameshift_variant;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2	ENSG00000124831|ENST00000308482|LRRFIP1;nc|ENSG00000093167|Q9Y608-2|LRRFIP2	nc|ENSG00000093167|Q9Y608-2|LRRFIP2	MULTI-MSMS	HCT116MG_D190212_S3	3	493.7726135253906	2	493.772522	985.530492	0.13609	6.7197E-05	0.045747	2.2589E-05	0.18184	8.9785E-05	493.77257810944013	20.133	0.52068	20.181	20.051	20.572	0.048107					14	9	2	0	0	0	0.19011	1	6969	6969		42.312	3.6977	1	10154000			26966	2868;1595	17175	17266	25885	25885					0.037148040149304506
REAEFTKSIA	10	Unmodified	_REAEFTKSIA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S1	1	576.306640625	2	576.306395	1150.59824	0.41788	0.00024083	-0.087851	-5.0629E-05	0.33003	0.0001902	576.3062949740763	27.36	0.41459	27.36	27.178	27.592	0					20	7	4	0	0	0	0.034465	1	9925	9925		98.73	49.176	1	282670000			26967	2606	17176	17267	25886	25886					0.02896209155096585
REAEFTKSIA	10	Unmodified	_REAEFTKSIA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S1	1	384.5395812988281	3	384.540022	1150.59824	-0.14128	-5.4329E-05	-0.74414	-0.00028615	-0.88542	-0.00034048	384.53975475875615	27.36	0.31189	27.36	27.178	27.49	0					11	5	3	0	0	0	0.16158	1	9928	9928		49.159	32.885	1	32012000			26968	2606	17176	17267	25887	25887					0.02896209155096585
REAEFTKSIA	10	Unmodified	_REAEFTKSIA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S2	2	576.3067016601562	2	576.306395	1150.59824	0.38174	0.00022	-0.064951	-3.7432E-05	0.31679	0.00018257	576.3063941167935	27.816	0.51448	27.474	27.295	27.81	-0.34201					30	9	5	0	0	0	0.02986	1	10121	10121		102.55	60.593	1	1204500000			26969	2606	17176	17267	25888	25888					0.02896209155096585
REAEFTKSIA	10	Unmodified	_REAEFTKSIA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S2	2	384.539794921875	3	384.540022	1150.59824	-0.054731	-2.1046E-05	-0.17524	-6.7388E-05	-0.22997	-8.8434E-05	384.5399368791392	27.82	0.35937	27.478	27.295	27.655	-0.34201					18	6	4	0	0	0	0.025008	1	10130	10130		90.104	61.87	1	183490000			26970	2606	17176	17267	25889	25889					0.02896209155096585
REAEFTKSIA	10	Unmodified	_REAEFTKSIA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S2	2	1151.6048583984375	1	1151.60551	1150.59824	0.49106	0.00056551	-0.33576	-0.00038666	0.1553	0.00017885	1151.6047262354127	27.817	0.25569	27.475	27.347	27.602	-0.34201					10	4	3	0	0	0	0.026206	1	10146	10146		109.15	48.056	1	30333000			26971	2606	17176	17267	25890	25890					0.02896209155096585
REAEFTKSIA	10	Unmodified	_REAEFTKSIA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S3	3	576.3067016601562	2	576.306395	1150.59824	0.63694	0.00036707	-0.071272	-4.1075E-05	0.56567	0.000326	576.3063608377445	27.655	0.78065	27.466	27.257	28.038	-0.18847					34	14	4	0	0	0	0.034465	1	9965	9965		98.73	41.008	1	477130000			26972	2606	17176	17267	25891	25891					0.02896209155096585
REAEFTKSIA	10	Unmodified	_REAEFTKSIA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S3	3	384.5400085449219	3	384.540022	1150.59824	0.11677	4.4901E-05	-0.040383	-1.5529E-05	0.076383	2.9372E-05	384.5399888933191	27.664	0.36379	27.476	27.309	27.673	-0.18847					19	6	4	0	0	0	0.043265	2	9968	9968;10016		74.094	54.95	1	78591000			26973	2606	17176	17267	25892;25893	25892					0.02896209155096585
REAEFTKSIA	10	Unmodified	_REAEFTKSIA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	HCT116MG_D190212_S4	4	576.3063354492188	2	576.306395	1150.59824	0.41213	0.00023751	0.11065	6.3767E-05	0.52278	0.00030128	576.3064477950817	27.901	0.51964	27.58	27.398	27.918	-0.32157					29	9	5	0	0	0	0.046759	1	9993	9993		89.609	40.054	1	197290000			26974	2606	17176	17267	25894	25894					0.02896209155096585
REAEFTKSIA	10	Unmodified	_REAEFTKSIA_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MSMS	HCT116MG_D190212_S4	4	384.53997802734375	3	384.540022	1150.59824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.909	1	27.587	27.087	28.087	-0.32157								0	0	0	0.022649	1	10012	10012		98.634	74.67	1				26975	2606	17176	17267	25895	25895					0.02896209155096585
REAEHGYAS	9	Unmodified	_REAEHGYAS_					0	0	0		ENST00000503473.5_1_5:176738378-176738831:-|nuORF;MXD3|p.Q50Pfs*15|4|0.37|ENSG00000213347|chr5:177311406-177311407|-/G|frameshift_variant;MXD3|p.Q50Rfs*24|1|0.26|ENSG00000213347|chr5:177311407-177311407|G/-|frameshift_variant;ENST00000410000.2_1_2:70142417-70143353:+|nuORF;ENST00000515378.5_1_4:2256939-2263707:-|nuORF;nc|ENSG00000213347|Q9BW11-3|MXD3;nc|ENSG00000213347|Q9BW11-2|MXD3;ENSG00000213347|ENST00000439742|MXD3;ENSG00000123933|ENST00000337190|MXD4;nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1;nc|ENSG00000213347|Q9BW11-4|MXD3	ENST00000503473.5_1_5:176738378-176738831:-|nuORF	ENST00000503473.5_1_5:176738378-176738831:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.2308044433594	2	510.230687	1018.44682	0.18705	9.5438E-05	-0.4276	-0.00021818	-0.24055	-0.00012274	510.23064215562437	11.701	0.17088	11.419	11.346	11.517	-0.28186					9	6	2	0	0	0	0.67944	1	3793	3793		6.6304	0.27627	1	387550			26976	1104	17177	17268	25896	25896					-0.06166352152763466
REAEILHKA	9	Unmodified	_REAEILHKA_					0	0	0		ENSG00000104312|ENST00000220751|RIPK2	ENSG00000104312|ENST00000220751|RIPK2	ENSG00000104312|ENST00000220751|RIPK2	MULTI-MSMS	HCT116MG_D190212_S2	2	356.204833984375	3	356.204974	1065.59309	-0.16339	-5.8201E-05	0.20861	7.4306E-05	0.045214	1.6105E-05	356.2049176347678	20.589	0.21257	20.21	20.076	20.289	-0.37949					5	3	2	0	0	0	0.5435	1	7230	7230		10.315	2.8382	1	9614300			26977	1923	17178	17269	25897	25897					0.06291950083118536
REAEILHKDRF	11	Unmodified	_REAEILHKDRF_					0	0	0		RIPK2|p.A73D|1|0.31|ENSG00000104312|chr8:89762873-89762873|C/A|missense_variant	RIPK2|p.A73D|1|0.31|ENSG00000104312|chr8:89762873-89762873|C/A|missense_variant	RIPK2|p.A73D|1|0.31|ENSG00000104312|chr8:89762873-89762873|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	707.3845825195312	2	707.3835	1412.75245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.046	1	21.818	21.318	22.318	-0.22777								0	0	0	0.9465	1	7646	7646		8.1555	1.0538	1				26978	18111	17179	17270	25898	25898					0.06258038640453378
REAELGARA	9	Unmodified	_REAELGARA_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;ENSG00000070756|ENST00000318607|PABPC1;PABPC3|p.E189G|1|0.2|ENSG00000151846|chr13:25096764-25096764|A/G|missense_variant;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000101104|Q4VXU2-2|PABPC1L	nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000070756|P11940-2|PABPC1	MSMS	HCT116MG_D190212_S2	2	486.7649230957031	2	486.764697	971.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.762	1	19.387	18.887	19.887	-0.37503								0	0	0	0.082341	1	6870	6870		61.09	9.4601	1				26979	1241;1752	17180	17271	25899	25899					0.027945174978867726
REAEPAKEA	9	Unmodified	_REAEPAKEA_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MULTI-MSMS	HCT116MG_D190212_S2	2	500.75677490234375	2	500.756538	999.498523	0.28271	0.00014157	0.16977	8.5015E-05	0.45249	0.00022659	500.7566580293929	11.107	0.34514	10.825	10.587	10.933	-0.28186					19	12	2	0	0	0	0.67119	1	3524	3524		7.1017	1.3699	1	407050			26980	880	17181	17272	25900	25900					-0.0012460845886153038
REAEPKLLP	9	Unmodified	_REAEPKLLP_					0	0	0		TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant;TRIM33|p.L700Efs*5|1|0.07|ENSG00000197323|chr1:114410281-114410282|-/CAGAATTCTCC|frameshift_variant;nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant	TRIM33|p.Q382Tfs*20|1|0.12|ENSG00000197323|chr1:114430809-114430810|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	526.8080444335938	2	526.808574	1051.60259	0.40734	0.00021459	-0.26004	-0.00013699	0.1473	7.7599E-05	526.8083892678314	29.699	3.8231	29.398	28.621	32.444	-0.30096					89	73	2	0	0	0	0.24895	1	11121	11121		36.127	7.6402	1	17502000			26981	6136	17182	17273	25901	25901					0.07885718368675043
REAEVTRTA	9	Unmodified	_REAEVTRTA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;ENST00000537598.5_1_12:69080821-69103022:+|nuORF;ENST00000540453.5_1_12:69080821-69083416:+|nuORF;ENST00000535333.5_1_12:69080821-69090662:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S1	1	516.7753295898438	2	516.775262	1031.53597	0.39472	0.00020398	-0.15144	-7.8261E-05	0.24327	0.00012572	516.7751731347633	15.77	0.20818	15.77	15.692	15.9	0					9	3	4	0	0	0	0.045223	1	5285	5285		77.049	36.324	1	23248000			26982	2297	17183	17274	25902	25902					0.021464828067564667
REAEVTRTA	9	Unmodified	_REAEVTRTA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;ENST00000537598.5_1_12:69080821-69103022:+|nuORF;ENST00000540453.5_1_12:69080821-69083416:+|nuORF;ENST00000535333.5_1_12:69080821-69090662:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7755737304688	2	516.775262	1031.53597	0.11492	5.9386E-05	0.36884	0.00019061	0.48376	0.00024999	516.7754545861559	12.192	0.16265	11.903	11.82	11.982	-0.28953					9	5	3	0	0	0	0.69954	1	3987	3987		5.2969	2.3016	1	685200			26983	2297	17183	17274	25903	25903					0.021464828067564667
REAEVTRTA	9	Unmodified	_REAEVTRTA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;ENST00000537598.5_1_12:69080821-69103022:+|nuORF;ENST00000540453.5_1_12:69080821-69083416:+|nuORF;ENST00000535333.5_1_12:69080821-69090662:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7753295898438	2	516.775262	1031.53597	0.16603	8.5801E-05	0.21699	0.00011213	0.38302	0.00019794	516.7753314606881	16.101	0.52247	15.767	15.533	16.055	-0.33451					21	9	4	0	0	0	0.0080275	1	5397	5397		118.21	50.371	1	58577000			26984	2297	17183	17274	25904	25904					0.021464828067564667
REAEVTRTA	9	Unmodified	_REAEVTRTA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;ENST00000537598.5_1_12:69080821-69103022:+|nuORF;ENST00000540453.5_1_12:69080821-69083416:+|nuORF;ENST00000535333.5_1_12:69080821-69090662:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S2	2	1032.54345703125	1	1032.54325	1031.53597	0.36989	0.00038192	0.56754	0.00058601	0.93743	0.00096794	1032.5436176793135	16.086	0.20896	15.751	15.637	15.846	-0.33451					5	3	2	0	0	0	0.07468	1	5407	5407		63.227	33.387	1	3809700			26985	2297	17183	17274	25905	25905					0.021464828067564667
REAPHLEKQPA	11	Unmodified	_REAPHLEKQPA_					0	0	0		ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1;nc|ENSG00000166452|Q9NQ31-3|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	MULTI-SECPEP	HCT116MG_D190212_S1	1	425.2192687988281	3	425.898321	1274.67313	0.13278	5.655E-05	-0.332	-0.0001414	-0.19922	-8.4847E-05	425.8983126603477	17.875	0.31276	17.875	17.724	18.037	0					7	5	2	0	0	0	0.35493	1	6109	6109		18.853	9.0886	1	2712900			26986	4857	17184	17275	25906	25906					0.04678391686343275
REAPHLEKQPA	11	Unmodified	_REAPHLEKQPA_					0	0	0		ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1;nc|ENSG00000166452|Q9NQ31-3|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	ENSG00000166452|ENST00000309377|AKIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	425.8979797363281	3	425.898321	1274.67313	-0.39972	-0.00017024	0.20891	8.8973E-05	-0.19081	-8.1266E-05	425.8983889547416	18.625	0.25969	18.261	18.113	18.373	-0.36325					7	4	2	0	0	0	0.19549	1	6432	6432		75.986	42.354	1	11807000			26987	4857	17184	17275	25907	25907					0.04678391686343275
REAQFGTTA	9	Unmodified	_REAQFGTTA_					0	0	0		ENST00000492178.1_1_3:3214458-3216930:-|nuORF;ENST00000498700.5_1_3:3214275-3221371:-|nuORF;ENST00000491834.5_1_3:3197887-3221343:-|nuORF;CRBN|p.Q297Lfs*6|1|0.04|ENSG00000113851|chr3:3154021-3154022|-/CTGTATA|frameshift_variant;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN	ENST00000492178.1_1_3:3214458-3216930:-|nuORF	ENST00000492178.1_1_3:3214458-3216930:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.21734619140625	2	490.743431	979.472308	0.29029	0.00014246	4.0148	0.0019702	4.3051	0.0021127	490.7434654599532	24.75	0.46802	24.37	24.135	24.603	-0.38003					22	8	5	0	0	0	0.2458	1	8935	8935		8.7454	5.1489	1	108780000			26988	599	17185	17276	25908	25908					-0.018248776303494196
REAQFGTTA	9	Unmodified	_REAQFGTTA_					0	0	0		ENST00000492178.1_1_3:3214458-3216930:-|nuORF;ENST00000498700.5_1_3:3214275-3221371:-|nuORF;ENST00000491834.5_1_3:3197887-3221343:-|nuORF;CRBN|p.Q297Lfs*6|1|0.04|ENSG00000113851|chr3:3154021-3154022|-/CTGTATA|frameshift_variant;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN	ENST00000492178.1_1_3:3214458-3216930:-|nuORF	ENST00000492178.1_1_3:3214458-3216930:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	490.74359130859375	2	490.743431	979.472308	0.23746	0.00011653	-0.14119	-6.929E-05	0.096264	4.7241E-05	490.74339810898607	24.584	0.41477	24.315	24.134	24.549	-0.26881					10	7	2	0	0	0	0.060947	1	8672	8672		69.338	9.9698	1	9925700			26989	599	17185	17276	25909	25909					-0.018248776303494196
REAQKFALA	9	Unmodified	_REAQKFALA_					0	0	0		ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	MULTI-MSMS	HCT116MG_D190212_S1	1	517.2933959960938	2	517.293091	1032.57163	0.5009	0.00025911	-0.27275	-0.00014109	0.22816	0.00011802	517.2928749527931	30.597	0.31221	30.597	30.451	30.763	0					9	5	3	0	0	0	0.12421	1	11238	11238		53.404	20.618	1	3878100			26990	3852	17186	17277	25910	25910					0.05664565054416926
REAQSFISA	9	Unmodified	_REAQSFISA_					0	0	0		ENST00000519259.5_1_5:65459659-65459779:+|nuORF;SREK1|p.K241Nfs*34|1|0.42|ENSG00000153914|chr5:66170115-66170115|A/-|frameshift_variant;nc|ENSG00000153914|Q8WXA9|SREK1;SREK1|p.K360Nfs*40|1|0.31|ENSG00000153914|chr5:66170886-66170886|A/-|frameshift_variant;ENSG00000153914|ENST00000334121|SREK1	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	504.75897216796875	2	504.759081	1007.50361	0.39113	0.00019743	-0.18739	-9.4585E-05	0.20374	0.00010284	504.75901933801055	34.089	0.26111	34.089	33.919	34.181	0					10	4	3	0	0	0	0.094138	1	12649	12649		59.368	13.669	1	7885800			26991	4197	17187	17278	25911	25911					0.00015695403760673798
REAQSFISA	9	Unmodified	_REAQSFISA_					0	0	0		ENST00000519259.5_1_5:65459659-65459779:+|nuORF;SREK1|p.K241Nfs*34|1|0.42|ENSG00000153914|chr5:66170115-66170115|A/-|frameshift_variant;nc|ENSG00000153914|Q8WXA9|SREK1;SREK1|p.K360Nfs*40|1|0.31|ENSG00000153914|chr5:66170886-66170886|A/-|frameshift_variant;ENSG00000153914|ENST00000334121|SREK1	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7593078613281	2	504.759081	1007.50361	0.55994	0.00028264	-0.25643	-0.00012943	0.30351	0.0001532	504.75887428612253	34.273	0.36346	34.097	33.916	34.279	-0.17512					14	6	3	0	0	0	0.023778	1	12747	12747		92.653	23.548	1	160560000			26992	4197	17187	17278	25912	25912					0.00015695403760673798
REAQSFISA	9	Unmodified	_REAQSFISA_					0	0	0		ENST00000519259.5_1_5:65459659-65459779:+|nuORF;SREK1|p.K241Nfs*34|1|0.42|ENSG00000153914|chr5:66170115-66170115|A/-|frameshift_variant;nc|ENSG00000153914|Q8WXA9|SREK1;SREK1|p.K360Nfs*40|1|0.31|ENSG00000153914|chr5:66170886-66170886|A/-|frameshift_variant;ENSG00000153914|ENST00000334121|SREK1	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1008.510986328125	1	1008.51089	1007.50361	0.70785	0.00071388	-0.62982	-0.00063518	0.078031	7.8695E-05	1008.5104738849872	34.273	0.25991	34.097	33.967	34.227	-0.17512					6	4	2	0	0	0	0.040027	1	12773	12773		79.596	24.094	1	28288000			26993	4197	17187	17278	25913	25913					0.00015695403760673798
REAQSFISA	9	Unmodified	_REAQSFISA_					0	0	0		ENST00000519259.5_1_5:65459659-65459779:+|nuORF;SREK1|p.K241Nfs*34|1|0.42|ENSG00000153914|chr5:66170115-66170115|A/-|frameshift_variant;nc|ENSG00000153914|Q8WXA9|SREK1;SREK1|p.K360Nfs*40|1|0.31|ENSG00000153914|chr5:66170886-66170886|A/-|frameshift_variant;ENSG00000153914|ENST00000334121|SREK1	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	504.7593688964844	2	504.759081	1007.50361	0.25563	0.00012903	-0.42559	-0.00021482	-0.16996	-8.5788E-05	504.7588343165203	34.452	0.57148	34.157	33.871	34.443	-0.29419					20	10	3	0	0	0	0.034046	1	12664	12664		82.529	17.294	1	85477000			26994	4197	17187	17278	25914	25914					0.00015695403760673798
REAQSFISA	9	Unmodified	_REAQSFISA_					0	0	0		ENST00000519259.5_1_5:65459659-65459779:+|nuORF;SREK1|p.K241Nfs*34|1|0.42|ENSG00000153914|chr5:66170115-66170115|A/-|frameshift_variant;nc|ENSG00000153914|Q8WXA9|SREK1;SREK1|p.K360Nfs*40|1|0.31|ENSG00000153914|chr5:66170886-66170886|A/-|frameshift_variant;ENSG00000153914|ENST00000334121|SREK1	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	ENST00000519259.5_1_5:65459659-65459779:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	504.75897216796875	2	504.759081	1007.50361	0.15125	7.6343E-05	-0.30492	-0.00015391	-0.15367	-7.7567E-05	504.7588941525493	34.595	0.408	34.21	33.984	34.392	-0.38558					19	7	4	0	0	0	0.034046	1	12622	12622		82.529	21.172	1	38867000			26995	4197	17187	17278	25915	25915					0.00015695403760673798
REAQSLISA	9	Unmodified	_REAQSLISA_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S1	1	487.76702880859375	2	487.766906	973.519259	0.1424	6.9459E-05	0.19264	9.3961E-05	0.33504	0.00016342	487.76673128132245	32.077	0.88633	32.077	31.753	32.639	0					23	16	2	0	0	0	0.053544	1	11810	11810		72.968	1.0457	1	51586000			26996	2536;18236	17188	17279	25916	25916					0.031439819208117115
REAQSLISA	9	Unmodified	_REAQSLISA_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S1	1	974.5266723632812	1	974.526535	973.519259	0.49583	0.0004832	-0.011558	-1.1263E-05	0.48427	0.00047193	974.5264091594739	32.04	0.26073	32.04	31.909	32.17	0					6	4	2	0	0	0	0.026999	1	11836	11836		89.401	20.296	1	6116900			26997	2536;18236	17188	17279	25917	25917					0.031439819208117115
REAQSLISA	9	Unmodified	_REAQSLISA_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S2	2	487.76702880859375	2	487.766906	973.519259	0.16982	8.2831E-05	-0.03787	-1.8472E-05	0.13195	6.436E-05	487.76680499291956	32.302	0.6766	32.072	31.838	32.515	-0.23009					27	12	4	0	0	0	0.0080847	1	11930	11930		118.07	32.427	1	281690000			26998	2536;18236	17188	17279	25918	25918					0.031439819208117115
REAQSLISA	9	Unmodified	_REAQSLISA_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S2	2	974.5272827148438	1	974.526535	973.519259	0.61012	0.00059458	-0.0065597	-6.3926E-06	0.60356	0.00058818	974.5263921911192	32.302	0.46841	32.072	31.89	32.359	-0.23009					14	8	3	0	0	0	0.016744	1	11939	11939		99.755	23.994	1	81835000			26999	2536;18236	17188	17279	25919	25919					0.031439819208117115
REAQSLISA	9	Unmodified	_REAQSLISA_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S3	3	487.76702880859375	2	487.766906	973.519259	0.095784	4.672E-05	0.27194	0.00013264	0.36773	0.00017936	487.7669319270825	32.403	0.67726	32.124	31.89	32.567	-0.27841					35	12	4	0	0	0	0.023778	1	11855	11855		92.653	17.724	1	134520000			27000	2536;18236	17188	17279	25920	25920					0.031439819208117115
REAQSLISA	9	Unmodified	_REAQSLISA_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S3	3	974.5267333984375	1	974.526535	973.519259	0.49629	0.00048365	0.15944	0.00015538	0.65573	0.00063903	974.5266334905576	32.387	0.31283	32.109	31.942	32.254	-0.27841					9	5	2	0	0	0	0.016744	1	11868	11868		99.755	23.994	1	9638100			27001	2536;18236	17188	17279	25921	25921					0.031439819208117115
REAQSLISA	9	Unmodified	_REAQSLISA_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S4	4	487.7673034667969	2	487.766906	973.519259	-0.13864	-6.7622E-05	0.93473	0.00045593	0.7961	0.00038831	487.7671141851053	32.562	0.77846	32.183	31.793	32.572	-0.37924					19	14	2	0	0	0	0.034046	1	11849	11849		82.529	7.6003	1	44489000			27002	2536;18236	17188	17279	25922	25922					0.031439819208117115
REAQSLISA	9	Unmodified	_REAQSLISA_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11;SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MSMS	HCT116MG_D190212_S4	4	974.5275268554688	1	974.526535	973.519259	0.55501	0.00054087	0.40048	0.00039027	0.95549	0.00093115	974.5267484416933	32.539	0.20765	32.16	32.053	32.26	-0.37924					6	3	2	0	0	0	0.034046	1	11875	11875		82.529	19.957	1	1508700			27003	2536;18236	17188	17279	25923	25923					0.031439819208117115
RECTIEATA	9	Carbamidomethyl (C)	_REC(Carbamidomethyl (C))TIEATA_	REC(1)TIEATA		REC(86)TIEATA		0	1	0		ENST00000502372.1_1_3:128889298-128890145:-|nuORF;nc|ENSG00000169714|P62633-7|CNBP;nc|ENSG00000169714|P62633-3|CNBP;nc|ENSG00000169714|P62633-2|CNBP;nc|ENSG00000169714|P62633-8|CNBP;nc|ENSG00000169714|P62633-5|CNBP;ENSG00000169714|ENST00000422453|CNBP;nc|ENSG00000169714|P62633-4|CNBP;nc|ENSG00000169714|P62633-6|CNBP	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	525.7484130859375	2	525.747856	1049.48116	0.29878	0.00015708	0.093437	4.9124E-05	0.39222	0.00020621	525.7478802652049	23.34	0.3132	23.34	23.21	23.523	0					9	5	2	0	0	0	0.030039	1	8311	8311		86.332	34.063	1	29607000			27004	5088	17189	17280	25924	25924	27				-0.04160272056174108
RECTIEATA	9	Carbamidomethyl (C)	_REC(Carbamidomethyl (C))TIEATA_	REC(1)TIEATA		REC(100)TIEATA		0	1	0		ENST00000502372.1_1_3:128889298-128890145:-|nuORF;nc|ENSG00000169714|P62633-7|CNBP;nc|ENSG00000169714|P62633-3|CNBP;nc|ENSG00000169714|P62633-2|CNBP;nc|ENSG00000169714|P62633-8|CNBP;nc|ENSG00000169714|P62633-5|CNBP;ENSG00000169714|ENST00000422453|CNBP;nc|ENSG00000169714|P62633-4|CNBP;nc|ENSG00000169714|P62633-6|CNBP	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	525.747802734375	2	525.747856	1049.48116	0.49883	0.00026226	-0.3992	-0.00020988	0.099639	5.2385E-05	525.7475442735621	23.813	0.41646	23.429	23.195	23.612	-0.38324					11	7	3	0	0	0	0.016744	1	8512	8512		99.755	47.487	1	31037000			27005	5088	17189	17280	25925	25925	27				-0.04160272056174108
RECTIEATA	9	Carbamidomethyl (C)	_REC(Carbamidomethyl (C))TIEATA_	REC(1)TIEATA		REC(110)TIEATA		0	1	0		ENST00000502372.1_1_3:128889298-128890145:-|nuORF;nc|ENSG00000169714|P62633-7|CNBP;nc|ENSG00000169714|P62633-3|CNBP;nc|ENSG00000169714|P62633-2|CNBP;nc|ENSG00000169714|P62633-8|CNBP;nc|ENSG00000169714|P62633-5|CNBP;ENSG00000169714|ENST00000422453|CNBP;nc|ENSG00000169714|P62633-4|CNBP;nc|ENSG00000169714|P62633-6|CNBP	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.7481079101562	2	525.747856	1049.48116	0.36724	0.00019308	0.17296	9.0933E-05	0.5402	0.00028401	525.7478409611581	23.305	0.36483	23.265	23.135	23.5	-0.03968					15	6	3	0	0	0	0.011082	1	8225	8225		110.67	58.406	1	38536000			27006	5088	17189	17280	25926	25926	27				-0.04160272056174108
RECTIEATA	9	Carbamidomethyl (C)	_REC(Carbamidomethyl (C))TIEATA_	REC(1)TIEATA		REC(73)TIEATA		0	1	0		ENST00000502372.1_1_3:128889298-128890145:-|nuORF;nc|ENSG00000169714|P62633-7|CNBP;nc|ENSG00000169714|P62633-3|CNBP;nc|ENSG00000169714|P62633-2|CNBP;nc|ENSG00000169714|P62633-8|CNBP;nc|ENSG00000169714|P62633-5|CNBP;ENSG00000169714|ENST00000422453|CNBP;nc|ENSG00000169714|P62633-4|CNBP;nc|ENSG00000169714|P62633-6|CNBP	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	ENST00000502372.1_1_3:128889298-128890145:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	525.748291015625	2	525.747856	1049.48116	0.32335	0.00017	-0.12166	-6.396E-05	0.20169	0.00010604	525.747744045495	23.593	0.46815	23.345	23.063	23.532	-0.24775					12	8	2	0	0	0	0.053544	1	8271	8271		72.968	34.994	1	8895900			27007	5088	17189	17280	25927	25927	27				-0.04160272056174108
REDDPGEAA	9	Unmodified	_REDDPGEAA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;ENST00000537598.5_1_12:69080821-69103022:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S1	1	480.2071228027344	2	480.206878	958.399203	0.11297	5.4249E-05	0.60329	0.0002897	0.71626	0.00034395	480.20700974038397	16.291	0.2081	16.291	16.213	16.421	0					5	3	2	0	0	0	0.33364	1	5500	5500		27.223	14.692	1	3639200			27008	2297	17190	17281	25928	25928					-0.08166051143621189
REDDPGEAA	9	Unmodified	_REDDPGEAA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;ENST00000537598.5_1_12:69080821-69103022:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2069091796875	2	480.206878	958.399203	0.18039	8.6625E-05	0.11903	5.7158E-05	0.29942	0.00014378	480.20680995500334	16.572	0.46874	16.23	16.048	16.516	-0.34183					13	8	3	0	0	0	0.0080847	1	5586	5586		118.07	70.32	1	30195000			27009	2297	17190	17281	25929	25929					-0.08166051143621189
REDDPGEAA	9	Unmodified	_REDDPGEAA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;NUP107|p.T251Qfs*20|1|0.28|ENSG00000111581|chr12:68709254-68709254|A/-|frameshift_variant;ENST00000537598.5_1_12:69080821-69103022:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S2	2	959.4075317382812	1	959.40648	958.399203	0.59862	0.00057432	0.44413	0.0004261	1.0427	0.0010004	959.4066151634021	16.572	0.2081	16.23	16.1	16.308	-0.34183					6	3	2	0	0	0	0.053544	1	5599	5599		72.968	33.018	1	7211700			27010	2297	17190	17281	25930	25930					-0.08166051143621189
REDDRVAIHEA	11	Unmodified	_REDDRVAIHEA_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	HCT116MG_D190212_S2	2	655.8258666992188	2	655.826015	1309.63748	0.47917	0.00031425	-0.22011	-0.00014435	0.25907	0.0001699	655.8259698612811	21.37	0.20725	20.987	20.91	21.117	-0.38288					5	3	2	0	0	0	0.11692	1	7546	7546		86.276	67.903	1	15628000			27011	1686;8354	17191	17282	25931	25931					-0.0049569056131986144
REDDRVAIHEA	11	Unmodified	_REDDRVAIHEA_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	HCT116MG_D190212_S2	2	437.5530090332031	3	437.553102	1309.63748	-0.0040868	-1.7882E-06	0.057243	2.5047E-05	0.053156	2.3259E-05	437.5531147641495	21.412	0.20725	21.029	20.91	21.117	-0.38288					7	3	3	0	0	0	0.1527	1	7548	7548		61.523	43.951	1	15628000			27012	1686;8354	17191	17282	25932	25932					-0.0049569056131986144
REDDRVAIHEA	11	Unmodified	_REDDRVAIHEA_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	HCT116MG_D190212_S3	3	437.55291748046875	3	437.553102	1309.63748	0.049074	2.1473E-05	0.093627	4.0967E-05	0.1427	6.2439E-05	437.5530134082929	20.606	0.26023	20.641	20.506	20.766	0.034473					9	4	3	0	0	0	0.72244	1	7163	7163		8.2081	1.9738	1	3375400			27013	1686;8354	17191	17282	25933	25933					-0.0049569056131986144
REDDRVAIHEA	11	Unmodified	_REDDRVAIHEA_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	MULTI-MATCH	HCT116MG_D190212_S1	1		3	437.553102	1309.63748	0.18817	8.2335E-05	0.092692	4.0558E-05	0.28086	0.00012289	437.55296750129185	20.826	0.15667	20.826	20.696	20.852	0	-0.0057087	3.2922E-05	NaN	61.523	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2140500			27014	1686;8354	17191	17282							-0.0049569056131986144
REDKWYHRLYL	11	Unmodified	_REDKWYHRLYL_					0	0	0			REV__GABRR2|p.T219Qfs*11|2|0.1|ENSG00000111886|chr6:89267760-89267760|T/-|frameshift_variant	REV__GABRR2|p.T219Qfs*11|2|0.1|ENSG00000111886|chr6:89267760-89267760|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	789.91357421875	2	789.912424	1577.8103	0.87377	0.00069021	0.71559	0.00056525	1.5894	0.0012555	789.9126561265376	46.269	0.30959	46.164	46.013	46.323	-0.1055					13	5	4	0	0	0	0.74191	1	17629	17629		5.7319	0	1	20391000	+		27015	11440	17192	17283	25934	25934					0.04450300565895304
REDPAGMEA	9	Unmodified	_REDPAGMEA_					0	0	0		ENST00000595681.5_1_19:6754625-6763810:-|nuORF;nc|ENSG00000125731|Q9BRG2-2|SH2D3A;ENSG00000125731|ENST00000245908|SH2D3A	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	488.2138366699219	2	488.213649	974.412745	0.16258	7.9375E-05	0.071078	3.4701E-05	0.23366	0.00011408	488.21378683799827	23.345	0.31092	22.96	22.83	23.141	-0.3852					7	5	2	0	0	0	0.49039	1	8345	8345		17.443	4.9111	1	12685000			27016	2902	17193	17284	25935	25935					-0.0754851663602949
REDPAGMEA	9	Unmodified	_REDPAGMEA_					0	0	0		ENST00000595681.5_1_19:6754625-6763810:-|nuORF;nc|ENSG00000125731|Q9BRG2-2|SH2D3A;ENSG00000125731|ENST00000245908|SH2D3A	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	488.2142639160156	2	488.213649	974.412745	0.046948	2.2921E-05	0.50327	0.0002457	0.55022	0.00026862	488.21384852212606	22.869	0.24814	22.85	22.699	22.948	-0.018869					8	4	2	0	0	0	0.19011	1	8045	8045		42.312	17.322	1	9345200			27017	2902	17193	17284	25936	25936					-0.0754851663602949
REDPDSVPP	9	Unmodified	_REDPDSVPP_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	506.2412414550781	2	506.240721	1010.46689	0.41107	0.0002081	0.12756	6.4578E-05	0.53863	0.00027268	506.240604836519	20.907	2.079	20.524	20.286	22.365	-0.38288					52	39	3	0	0	0	0.31596	2	7722	7379;7722		29.082	8.628	1	15223000			27018	6662	17194	17285	25937;25938	25938					-0.03792601212808222
REDPDSVPP	9	Unmodified	_REDPDSVPP_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	506.24090576171875	2	506.240721	1010.46689	0.17781	9.0017E-05	0.33661	0.00017041	0.51443	0.00026042	506.2408292312581	20.272	0.88492	20.32	20.103	20.988	0.048109					32	16	2	0	0	0	0.24895	2	7054	7021;7054		36.127	13.391	1	7491200			27019	6662	17194	17285	25939;25940	25940					-0.03792601212808222
REDPDSVPP	9	Unmodified	_REDPDSVPP_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	506.24029541015625	2	506.240721	1010.46689	0.22487	0.00011384	-0.6553	-0.00033174	-0.43044	-0.00021791	506.24073756256365	21.212	1.4136	21.23	20.958	22.372	0.018446					37	26	2	0	0	0	0.39784	1	7300	7300		22.736	2.3217	1	3635400			27020	6662	17194	17285	25941	25941					-0.03792601212808222
REDPDSVPP	9	Unmodified	_REDPDSVPP_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MSMS	HCT116MG_D190212_S3	3	506.24072265625	2	506.240721	1010.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.981	1	22.962	22.462	23.462	-0.018869								0	0	0	0.62451	1	8091	8091		22.736	0.98964	1				27021	6662	17194	17285	25942	25942					-0.03792601212808222
REDPDSVPP	9	Unmodified	_REDPDSVPP_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	506.2405090332031	2	506.240721	1010.46689	0.23124	0.00011707	0.13654	6.9123E-05	0.36779	0.00018619	506.2407310767883	20.59	0.7792	20.389	20.144	20.923	-0.20133					22	14	2	0	0	0	0.39784	1	7103	7103		22.736	0	1	1841500			27022	6662	17194	17285	25943	25943					-0.03792601212808222
REDPDSVPP	9	Unmodified	_REDPDSVPP_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	506.240721	1010.46689	0.41107	0.0002081	0.12756	6.4578E-05	0.53863	0.00027268	506.240604836519	20.907	2.079	20.524	20.286	22.365	-0.38288	0.11299	-7.0349E-05	NaN	36.127	52	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15223000			27023	6662	17194	17285							-0.03792601212808222
REDPDSVPP	9	Unmodified	_REDPDSVPP_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	506.240721	1010.46689	0.23124	0.00011707	0.13654	6.9123E-05	0.36779	0.00018619	506.2407310767883	20.59	0.7792	20.389	20.144	20.923	-0.20133	-0.022102	-6.1261E-05	NaN	36.127	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1841500			27024	6662	17194	17285							-0.03792601212808222
REDRTKRLFRH	11	Unmodified	_REDRTKRLFRH_					0	0	0		ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	MSMS	HCT116MG_D190212_S2	2	757.427490234375	2	757.426565	1512.83858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.539	1	54.349	53.849	54.849	-0.1894								0	0	0	0.95636	1	21000	21000		2.9952	0	1				27025	6581	17195	17286	25944	25944					0.10267043265821485
REDSKGLAA	9	Unmodified	_REDSKGLAA_					0	0	0		SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN;SMTN|p.L317Pfs*24|1|0.4|ENSG00000183963|chr22:31090966-31090967|-/C|frameshift_variant;SMTN|p.S239Afs*118|6|0.25|ENSG00000183963|chr22:31089936-31089936|C/-|frameshift_variant;SMTN|p.A318Pfs*39|1|0.29|ENSG00000183963|chr22:31090967-31090967|C/-|frameshift_variant	SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant	SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7512512207031	2	473.751256	945.487959	-0.043141	-2.0438E-05	0.030052	1.4237E-05	-0.013089	-6.2009E-06	473.75124143014716	18.345	0.26141	17.982	17.851	18.113	-0.36325					7	4	2	0	0	0	0.13424	1	6326	6326		51.415	11.466	1	12676000			27026	5752	17196	17287	25945	25945					0.01303408886701618
REEAARLAA	9	Unmodified	_REEAARLAA_					0	0	0		ENSG00000175602|ENST00000312579|CCDC85B	ENSG00000175602|ENST00000312579|CCDC85B	ENSG00000175602|ENST00000312579|CCDC85B	MULTI-MSMS	HCT116MG_D190212_S1	1	493.7726135253906	2	493.772522	985.530492	0.47218	0.00023315	-0.32896	-0.00016243	0.14322	7.0718E-05	493.7725332075173	20.461	0.15642	20.461	20.383	20.54	0					4	2	2	0	0	0	0.26031	1	7176	7176		34.932	0	1	4177400			27027	5389	17197	17288	25946	25946					0.037148040149304506
REEAARLAA	9	Unmodified	_REEAARLAA_					0	0	0		ENSG00000175602|ENST00000312579|CCDC85B	ENSG00000175602|ENST00000312579|CCDC85B	ENSG00000175602|ENST00000312579|CCDC85B	MSMS	HCT116MG_D190212_S4	4	493.7727966308594	2	493.772522	985.530492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.639	1	20.438	19.938	20.938	-0.20133								0	0	0	0.37224	1	7077	7077		34.932	0	1				27028	5389	17197	17288	25947	25947					0.037148040149304506
REEAEGLAP	9	Unmodified	_REEAEGLAP_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	HCT116MG_D190212_S4	4	486.2430114746094	2	486.243264	970.471974	-0.13598	-6.6117E-05	0.3144	0.00015288	0.17842	8.6758E-05	486.2433495437976	26.489	0.41595	26.188	25.974	26.389	-0.30087					13	7	2	0	0	0	0.055677	1	9444	9444		71.922	10.32	1	6618400	+		27029	13131	17198	17289	25948	25948					-0.014442973502013956
REEDGLKAA	9	Unmodified	_REEDGLKAA_					0	0	0		ENST00000295951.7_1_3:57742468-57743248:+|nuORF	ENST00000295951.7_1_3:57742468-57743248:+|nuORF	ENST00000295951.7_1_3:57742468-57743248:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7562255859375	2	494.756538	987.498523	0.325	0.00016079	-0.14758	-7.3019E-05	0.17741	8.7776E-05	494.7565302091849	19.283	0.26057	18.914	18.784	19.044	-0.3695					8	4	2	0	0	0	0.045679	1	6686	6686		76.825	31.125	1	19426000			27030	6978	17199	17290	25949	25949					0.00427391541131783
REEDGLKAA	9	Unmodified	_REEDGLKAA_					0	0	0		ENST00000295951.7_1_3:57742468-57743248:+|nuORF	ENST00000295951.7_1_3:57742468-57743248:+|nuORF	ENST00000295951.7_1_3:57742468-57743248:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	494.756591796875	2	494.756538	987.498523	0.18423	9.1149E-05	0.28872	0.00014285	0.47295	0.00023399	494.7567117230897	18.154	0.20812	18.231	18.101	18.309	0.076334					5	3	2	0	0	0	0.1935	1	6171	6171		41.956	7.5538	1	5714400			27031	6978	17199	17290	25950	25950					0.00427391541131783
REEDGLKAA	9	Unmodified	_REEDGLKAA_					0	0	0		ENST00000295951.7_1_3:57742468-57743248:+|nuORF	ENST00000295951.7_1_3:57742468-57743248:+|nuORF	ENST00000295951.7_1_3:57742468-57743248:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	494.756538	987.498523	0.21341	0.00010559	-0.47485	-0.00023493	-0.26144	-0.00012935	494.7563694880117	18.51	0.15594	18.329	18.251	18.407	-0.18052	0.049356	-0.00027391	NaN	41.956	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1083500			27032	6978	17199	17290							0.00427391541131783
REEEGALAP	9	Unmodified	_REEEGALAP_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	HCT116MG_D190212_S2	2	486.2432556152344	2	486.243264	970.471974	0.1157	5.6258E-05	0.24283	0.00011808	0.35853	0.00017433	486.24344779982056	26.61	0.46647	26.249	25.921	26.387	-0.36164					17	8	3	0	0	0	0.053544	1	9614	9614		72.968	10.395	1	18447000			27033	3032	17200	17291	25951	25951					-0.014442973502013956
REEEGALAP	9	Unmodified	_REEEGALAP_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	HCT116MG_D190212_S3	3	486.2436828613281	2	486.243264	970.471974	0.28032	0.0001363	0.22192	0.00010791	0.50224	0.00024421	486.2433736586404	26.278	0.46906	26.129	25.89	26.359	-0.14924					17	8	3	0	0	0	0.041798	1	9404	9404		78.728	6.8058	1	18026000			27034	3032	17200	17291	25952	25952					-0.014442973502013956
REEEGALAP	9	Unmodified	_REEEGALAP_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	486.243264	970.471974	-0.13598	-6.6117E-05	0.3144	0.00015288	0.17842	8.6758E-05	486.2433495437976	26.489	0.41595	26.188	25.974	26.389	-0.30087	-6.4701E-05	5.1596E-05	NaN	78.728	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6618400			27035	3032	17200	17291							-0.014442973502013956
REEKEPEQPG	10	Unmodified	_REEKEPEQPG_					0	0	0			REV__ENST00000576723.5_1_17:7843028-7852016:+|nuORF	REV__ENST00000576723.5_1_17:7843028-7852016:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	599.788818359375	2	599.788566	1197.56258	1.0443	0.00062635	-0.83659	-0.00050178	0.2077	0.00012458	599.787908972512	18.068	0.20803	17.893	17.74	17.948	-0.17501					6	3	2	0	0	0	0.60826	1	6048	6048		27.629	0	1	1471900	+		27036	10219	17201	17292	25953	25953					-0.02829873092582602
REERWRQYNQE	11	Unmodified	_REERWRQYNQE_					0	0	0			REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	797.8804321289062	2	797.379477	1592.7444	0.81868	0.0006528	-0.86722	-0.00069151	-0.048543	-3.8707E-05	797.3787792980353	22.579	0.36441	22.341	22.185	22.55	-0.23758					9	6	2	0	0	0	0.74191	1	7886	7886		1.1933	0	1	2258700	+		27037	13814	17202	17293	25954	25954					-0.028261403469514335
REERWRQYNQE	11	Unmodified	_REERWRQYNQE_					0	0	0			REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MSMS	HCT116MG_D190212_S4	4	797.3799438476562	2	797.379477	1592.7444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.306	1	34.92	34.42	35.42	-0.38606								0	0	0	0.9598	1	12926	12926		1.1933	0.84271	1		+		27038	13814	17202	17293	25955	25955					-0.028261403469514335
REESSSSDEDD	11	Unmodified	_REESSSSDEDD_					0	0	0		ENSG00000176407|ENST00000409785|KCMF1	ENSG00000176407|ENST00000409785|KCMF1	ENSG00000176407|ENST00000409785|KCMF1	MSMS	HCT116MG_D190212_S4	4	628.23046875	2	628.231475	1254.4484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.7274	1	3.4628	2.9628	3.9628	-0.26456								0	0	0	0.96208	1	1140	1140		0	0	1				27039	5419	17203	17294	25956	25956					-0.1686485243599236
REESSSSDEDD	11	Unmodified	_REESSSSDEDD_					0	0	0		ENSG00000176407|ENST00000409785|KCMF1	ENSG00000176407|ENST00000409785|KCMF1	ENSG00000176407|ENST00000409785|KCMF1	MSMS	HCT116MG_D190212_S4	4	628.2313842773438	2	628.231475	1254.4484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.486	1	62.237	61.737	62.737	-0.24919								0	0	0	0.96208	1	23596	23596		0	0	1				27040	5419	17203	17294	25957	25957					-0.1686485243599236
REEVGSSNKW	10	Unmodified	_REEVGSSNKW_					0	0	0			REV__nc|ENSG00000142166|P17181-2|IFNAR1	REV__nc|ENSG00000142166|P17181-2|IFNAR1	MULTI-MSMS	HCT116MG_D190212_S3	3	596.2919311523438	2	596.291276	1190.568	0.71772	0.00042797	-0.13498	-8.0488E-05	0.58274	0.00034748	596.2910957303252	26.251	0.78146	26.102	25.786	26.567	-0.14924					20	14	2	0	0	0	0.83158	1	9371	9371		9.3831	1.473	1	3807400	+		27041	12346	17204	17295	25958	25958					-0.019661495100763204
REFPKFFTF	9	Unmodified	_REFPKFFTF_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ACACA|p.A1397T|1|0.11|ENSG00000278540|chr17:37193385-37193385|C/T|missense_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	609.8189086914062	2	609.818941	1217.62333	0.53985	0.00032921	-0.18562	-0.0001132	0.35422	0.00021601	609.8187662152784	54.979	0.20448	54.791	54.662	54.867	-0.18797					9	3	3	0	0	0	0.031831	1	21206	21206		84.522	40.75	1	115310000			27042	19	17205	17296	25959	25959					0.02322308748330215
REFPKFFTF	9	Unmodified	_REFPKFFTF_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ACACA|p.A1397T|1|0.11|ENSG00000278540|chr17:37193385-37193385|C/T|missense_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	609.8189697265625	2	609.818941	1217.62333	0.47291	0.00028839	0.52061	0.00031748	0.99352	0.00060587	609.8189080473273	55.053	0.26163	54.762	54.613	54.874	-0.2918					8	4	3	0	0	0	0.2593	1	20908	20908		4.897	0	1	3359700			27043	19	17205	17296	25960	25960					0.02322308748330215
REFPKFFTF	9	Unmodified	_REFPKFFTF_					0	0	0		ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ACACA|p.A1397T|1|0.11|ENSG00000278540|chr17:37193385-37193385|C/T|missense_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	609.818941	1217.62333	0.58912	0.00035925	-0.61008	-0.00037204	-0.020962	-1.2783E-05	609.8186535517643	54.833	0.1526	54.833	54.739	54.892	0	0.037729	-0.00037142	NaN	84.522	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15432000			27044	19	17205	17296							0.02322308748330215
REGAGAPPPPP	11	Unmodified	_REGAGAPPPPP_					0	0	0			REV__ENST00000377142.4_1_20:21494349-21494634:-|nuORF	REV__ENST00000377142.4_1_20:21494349-21494634:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	522.9089965820312	2	523.274898	1044.53524	0.30729	0.0001608	0.31183	0.00016318	0.61913	0.00032398	523.2750174362186	19.56	0.93757	19.62	19.386	20.323	0.05983					28	17	2	0	0	0	0.65047	1	6851	6851		29.841	1.3461	1	5700300	+		27045	15233	17206	17297	25961	25961					0.014756881576886371
REGAGAPPPPP	11	Unmodified	_REGAGAPPPPP_					0	0	0			REV__ENST00000377142.4_1_20:21494349-21494634:-|nuORF	REV__ENST00000377142.4_1_20:21494349-21494634:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	523.2750244140625	2	523.274898	1044.53524	0.35978	0.00018826	0.01214	6.3528E-06	0.37192	0.00019461	523.2748491175223	19.924	0.82209	19.73	19.486	20.308	-0.19367					19	15	2	0	0	0	0.61797	1	6776	6776		33.445	3.6043	1	1817700	+		27046	15233	17206	17297	25962	25962					0.014756881576886371
REGAPGPAA	9	Unmodified	_REGAPGPAA_					0	0	0		ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	HCT116MG_D190212_S2	2	413.2142028808594	2	413.214309	824.414065	-0.093208	-3.8515E-05	-0.14174	-5.8568E-05	-0.23494	-9.7083E-05	413.2142533639644	17.662	0.47001	17.306	17.075	17.545	-0.35647					13	8	3	0	0	0	0.39784	1	6034	6034		22.736	0.98964	1	12892000			27047	2970	17207	17298	25963	25963					-0.005165144849570424
REGAPGPAA	9	Unmodified	_REGAPGPAA_					0	0	0		ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	413.214309	824.414065	0.1258	5.1983E-05	-0.48192	-0.00019914	-0.35612	-0.00014715	413.2139618942725	17.228	0.15639	17.228	17.098	17.255	0	-0.038718	-0.00021302	NaN	22.736	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	690770			27048	2970	17207	17298							-0.005165144849570424
REGDEGPPGPQ	11	Unmodified	_REGDEGPPGPQ_					0	0	0			REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	HCT116MG_D190212_S2	2	569.7597045898438	2	569.759809	1137.50507	0.32231	0.00018364	0.046847	2.6691E-05	0.36916	0.00021033	569.7597572839967	18.053	0.78312	17.697	17.18	17.963	-0.35647					29	14	3	0	0	0	0.6229	1	6081	6081		32.898	6.6296	1	7238100	+		27049	10865	17208	17299	25964	25964					-0.05818715298141797
REGDEGPPGPQ	11	Unmodified	_REGDEGPPGPQ_					0	0	0			REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	HCT116MG_D190212_S3	3	569.7598876953125	2	569.759809	1137.50507	0.17224	9.8135E-05	0.17625	0.00010042	0.34849	0.00019856	569.7598227652321	17.667	1.4569	17.748	16.649	18.106	0.081358					56	27	3	0	0	0	0.37551	2	5918	5679;5918		57.204	32.898	1	13641000	+		27050	10865	17208	17299	25965;25966	25966					-0.05818715298141797
REGDEGPPGPQ	11	Unmodified	_REGDEGPPGPQ_					0	0	0			REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	HCT116MG_D190212_S4	4	569.7599487304688	2	569.759809	1137.50507	0.28523	0.00016251	0.12687	7.2287E-05	0.4121	0.0002348	569.759847854667	17.78	1.5537	17.605	16.599	18.153	-0.17501					65	29	3	0	0	0	0.68512	2	5800	5576;5800		25.997	2.2076	1	10223000	+		27051	10865	17208	17299	25967;25968	25968					-0.05818715298141797
REGENFKVQ	9	Unmodified	_REGENFKVQ_					0	0	0			REV__SYNDIG1-MYH9|1|fusion	REV__SYNDIG1-MYH9|1|fusion	MULTI-SECPEP	HCT116MG_D190212_S1	1	553.2913208007812	2	553.783087	1105.55162	0.56753	0.00031429	-0.96056	-0.00053194	-0.39302	-0.00021765	553.7824999689944	20.38	0.41729	20.38	20.07	20.488	0					10	7	2	0	0	0	0.17558	1	7100	7100		27.629	1.3607	1	2095900	+		27052	11078	17209	17300	25969	25969					0.0030676932381084043
REGTLPTFDP	10	Unmodified	_REGTLPTFDP_					0	0	0		ENST00000440645.3_1_X:55309181-55315115:+|nuORF;ENSG00000158639|ENST00000374955|PAGE5;nc|ENSG00000158639|Q96GU1|PAGE5	ENST00000440645.3_1_X:55309181-55315115:+|nuORF	ENST00000440645.3_1_X:55309181-55315115:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	378.192626953125	3	378.192623	1131.55604	0.041154	1.5564E-05	-0.15505	-5.8638E-05	-0.11389	-4.3074E-05	378.19245622821916	26.482	0.20831	26.333	26.203	26.411	-0.14924					7	3	3	0	0	0	0.86862	1	9521	9521		5.7834	3.5007	1	4043200			27053	4385	17210	17301	25970	25970					-0.004477662532735849
REGWFSVTP	9	Unmodified	_REGWFSVTP_					0	0	0		ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1	ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENST00000523948.5_1_8:56686169-56737149:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	539.77001953125	2	539.769448	1077.52434	0.20579	0.00011108	-0.0089974	-4.8565E-06	0.19679	0.00010622	539.7690967180469	50.015	0.51005	49.851	49.483	49.993	-0.16369					11	9	2	0	0	0	0.29516	1	19197	19197		31.268	1.0435	1	22506000			27054	3490	17211	17302	25971	25971					-0.011317142165808036
REHAPFLVA	9	Unmodified	_REHAPFLVA_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	HCT116MG_D190212_S2	2	520.2880859375	2	520.287808	1038.56106	0.23012	0.00011973	0.46944	0.00024425	0.69956	0.00036397	520.2879191460306	38.709	0.42385	38.624	38.33	38.754	-0.084618					15	7	3	0	0	0	0.20983	1	14536	14536		40.239	24.392	1	70158000			27055	5467	17212	17303	25972	25972					0.04332582399979401
REHAPFLVA	9	Unmodified	_REHAPFLVA_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	HCT116MG_D190212_S3	3	520.288330078125	2	520.287808	1038.56106	0.22959	0.00011945	0.58414	0.00030392	0.81373	0.00042337	520.2881924686495	38.997	0.41576	38.695	38.404	38.82	-0.30137					15	7	3	0	0	0	0.37942	1	14444	14444		23.79	12.149	1	32855000			27056	5467	17212	17303	25973	25973					0.04332582399979401
REHAPFLVA	9	Unmodified	_REHAPFLVA_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	HCT116MG_D190212_S4	4	520.2606811523438	2	520.287808	1038.56106	0.30413	0.00015823	0.50857	0.0002646	0.81269	0.00042283	520.2879067837188	39.117	0.34455	38.736	38.54	38.884	-0.38055					17	7	3	0	0	0	0.55732	2	14395	14343;14395		13.615	3.5103	1	21226000			27057	5467	17212	17303	25974;25975	25975					0.04332582399979401
REHEHVVEC	9	Unmodified	_REHEHVVEC_					0	0	0		ENSG00000007168|ENST00000397195|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	ENSG00000007168|ENST00000397195|PAFAH1B1	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2587890625	2	569.258922	1136.50329	0.15194	8.6491E-05	0.2184	0.00012433	0.37033	0.00021082	569.2590421539712	18.918	0.41748	18.549	18.314	18.732	-0.3695					11	7	3	0	0	0	0.037825	1	6540	6540		80.676	57.94	1	20148000			27058	839	17213	17304	25976	25976					-0.059500475877257486
REHETNGVA	9	Unmodified	_REHETNGVA_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.D534Mfs*14|1|0.24|ENSG00000115415|chr2:190980653-190980653|G/-|frameshift_variant;STAT1|p.K567Nfs*25|2|0.2|ENSG00000115415|chr2:190979798-190979798|T/-|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	HCT116MG_D190212_S1	1	506.744140625	2	506.743962	1011.47337	0.43748	0.00022169	0.11111	5.6303E-05	0.54858	0.00027799	506.7439980093687	15.092	0.31309	15.092	14.962	15.275	0					6	5	2	0	0	0	0.52876	1	5013	5013		15.248	8.5253	1	5015100			27059	2467	17214	17305	25977	25977					-0.031906632614322916
REHGAFDAV	9	Unmodified	_REHGAFDAV_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S3	3	501.2436218261719	2	501.243598	1000.47264	0.57257	0.000287	-0.44897	-0.00022504	0.12361	6.1956E-05	501.243449975551	29.398	0.36491	29.176	28.994	29.359	-0.22195					9	6	2	0	0	0	0.17622	1	10694	10694		43.772	9.67	1	6768800			27060	1727	17215	17306	25978	25978					-0.027574579104793884
REHGAFDAV	9	Unmodified	_REHGAFDAV_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S4	4	501.2436218261719	2	501.243598	1000.47264	0.34191	0.00017138	0.0037065	1.8578E-06	0.34561	0.00017324	501.2435734670633	29.616	0.41602	29.267	29.033	29.449	-0.34921					9	7	2	0	0	0	0.47413	1	10736	10736		18.373	3.5348	1	2326800			27061	1727	17215	17306	25979	25979					-0.027574579104793884
REHGAFDAV	9	Unmodified	_REHGAFDAV_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	501.243598	1000.47264	0.34191	0.00017138	0.0037065	1.8578E-06	0.34561	0.00017324	501.2435734670633	29.616	0.41602	29.267	29.033	29.449	-0.34921	0.045451	7.8259E-05	NaN	43.772	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2326800			27062	1727	17215	17306							-0.027574579104793884
REHILEDEKP	10	Unmodified	_REHILEDEKP_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	HCT116MG_D190212_S2	2	422.2801818847656	3	422.554331	1264.64116	0.27467	0.00011606	-1.0223	-0.00043198	-0.74763	-0.00031592	422.55416756908284	24.003	0.2596	23.62	23.456	23.715	-0.38324					6	4	2	0	0	0	0.53295	1	8580	8580		29.291	17.66	1	2370300			27063	1859	17216	17307	25980	25980					0.019429792125038148
REHLNPQAA	9	Unmodified	_REHLNPQAA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2702026367188	2	518.270147	1034.52574	0.46177	0.00023932	-0.57616	-0.0002986	-0.11438	-5.9282E-05	518.2698170443783	18.075	0.26068	18.075	17.933	18.193	0					6	4	2	0	0	0	0.28785	1	6212	6212		32.037	10.291	1	2526400			27064	6063	17217	17308	25981	25981					0.009859198721869689
REHLNPQAA	9	Unmodified	_REHLNPQAA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2701416015625	2	518.270147	1034.52574	-0.053055	-2.7497E-05	0.45527	0.00023595	0.40222	0.00020846	518.2701556918552	18.814	0.41673	18.451	18.269	18.686	-0.36325					11	7	2	0	0	0	0.22528	1	6501	6501		38.615	14.825	1	20419000			27065	6063	17217	17308	25982	25982					0.009859198721869689
REHLNPQAA	9	Unmodified	_REHLNPQAA_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	518.270147	1034.52574	0.46177	0.00023932	-0.57616	-0.0002986	-0.11438	-5.9282E-05	518.2698170443783	18.075	0.26068	18.075	17.933	18.193	0	-0.18764	-0.00041733	NaN	38.615	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2526400			27066	6063	17217	17308							0.009859198721869689
REHLTKFNVWG	11	Unmodified	_REHLTKFNVWG_					0	0	0		ENST00000414366.1_9:66699705-66708473:-|nuORF;ENST00000435744.5_1_21:14424137-14433010:+|nuORF	ENST00000414366.1_9:66699705-66708473:-|nuORF	ENST00000414366.1_9:66699705-66708473:-|nuORF	MSMS	HCT116MG_D190212_S3	3	463.1306457519531	3	462.914083	1385.72042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.268	1	13.337	12.837	13.837	0.069158								0	0	0	0.9613	1	4197	4197		0.40827	0	1				27067	7746	17218	17309	25983	25983					0.042986709573142434
REHLWYKRNNN	11	Unmodified	_REHLWYKRNNN_					0	0	0			REV__nc|ENSG00000165923|Q5U5Z8-2|AGBL2	REV__nc|ENSG00000165923|Q5U5Z8-2|AGBL2	MSMS	HCT116MG_D190212_S1	1	510.59454345703125	3	510.595524	1528.76474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.77	1	9.77	9.27	10.27	0								0	0	0	0.96121	1	2968	2968		0.45452	0.35968	1		+		27068	13083	17219	17310	25984	25984					0.02151075103529365
REHPKLKAP	9	Unmodified	_REHPKLKAP_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.8240356445312	2	538.322183	1074.62981	0.29783	0.00016033	0.082714	4.4527E-05	0.38054	0.00020486	538.3222034746871	18.241	0.36532	17.884	17.597	17.963	-0.35647					11	6	2	0	0	0	0.1535	1	6255	6255		47.594	14.809	1	12387000			27069	5239	17220	17311	25985	25985					0.09548246699705487
REHPKLKAP	9	Unmodified	_REHPKLKAP_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	HCT116MG_D190212_S2	2	359.2170104980469	3	359.217214	1074.62981	-0.36243	-0.00013019	0.13208	4.7445E-05	-0.23035	-8.2747E-05	359.2172764457455	18.249	0.47007	17.892	17.596	18.066	-0.35756					18	8	3	0	0	0	0.02327	1	6269	6269		77.049	39.974	1	13974000			27070	5239	17220	17311	25986	25986					0.09548246699705487
REHPKLKAP	9	Unmodified	_REHPKLKAP_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.3226318359375	2	538.322183	1074.62981	0.39116	0.00021057	-0.0059367	-3.1958E-06	0.38522	0.00020737	538.3220936965859	16.239	0.41582	16.324	16.029	16.445	0.085423					13	7	3	0	0	0	0.29516	1	5369	5369		31.268	12.011	1	1822700			27071	5239	17220	17311	25987	25987					0.09548246699705487
REHPKLKAP	9	Unmodified	_REHPKLKAP_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	HCT116MG_D190212_S3	3	359.2171630859375	3	359.217214	1074.62981	-0.16449	-5.9087E-05	0.22134	7.9511E-05	0.056857	2.0424E-05	359.21719414913144	16.164	0.72797	16.25	15.873	16.601	0.085424					20	13	3	0	0	0	0.14362	1	5393	5393		46.022	27.649	1	3027000			27072	5239	17220	17311	25988	25988					0.09548246699705487
REHPKLKAP	9	Unmodified	_REHPKLKAP_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MSMS	HCT116MG_D190212_S4	4	359.2171325683594	3	359.217214	1074.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.971	1	16.804	16.304	17.304	-0.16664								0	0	0	0.52331	1	5595	5595		32.037	12.676	1				27073	5239	17220	17311	25989	25989					0.09548246699705487
REHPKVNVP	9	Unmodified	_REHPKVNVP_					0	0	0		ENSG00000104805|ENST00000405315|NUCB1;ENST00000465524.5_1_19:49414488-49422475:+|nuORF	ENSG00000104805|ENST00000405315|NUCB1	ENSG00000104805|ENST00000405315|NUCB1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.303955078125	2	538.30399	1074.59343	0.51493	0.00027719	-0.35262	-0.00018982	0.16231	8.7373E-05	538.303811557293	22.098	0.62358	21.713	21.531	22.155	-0.38503					20	11	3	0	0	0	0.24534	1	7814	7814		36.506	8.8774	1	22334000			27074	1951	17221	17312	25990	25990					0.05911369802993249
REHPKVNVP	9	Unmodified	_REHPKVNVP_					0	0	0		ENSG00000104805|ENST00000405315|NUCB1;ENST00000465524.5_1_19:49414488-49422475:+|nuORF	ENSG00000104805|ENST00000405315|NUCB1	ENSG00000104805|ENST00000405315|NUCB1	MULTI-MSMS	HCT116MG_D190212_S2	2	359.2049255371094	3	359.205085	1074.59343	-0.12073	-4.3366E-05	-0.045134	-1.6213E-05	-0.16586	-5.9578E-05	359.2050627693897	22.098	0.52	21.713	21.531	22.051	-0.38503					14	9	2	0	0	0	0.071914	1	7820	7820		59.052	44.834	1	26251000			27075	1951	17221	17312	25991	25991					0.05911369802993249
REHQFYETLP	10	Unmodified	_REHQFYETLP_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2;nc|ENSG00000068745|Q9UHH9-3|IP6K2;nc|ENSG00000068745|Q9UHH9-6|IP6K2;nc|ENSG00000068745|Q9UHH9-2|IP6K2;nc|ENSG00000068745|Q9UHH9-4|IP6K2;nc|ENSG00000068745|Q9UHH9-5|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-MSMS	HCT116MG_D190212_S2	2	660.0540161132812	2	660.322576	1318.6306	0.63157	0.00041704	-0.52192	-0.00034464	0.10965	7.2406E-05	660.3219254644516	38.992	0.56769	38.907	38.754	39.321	-0.084621					15	10	2	0	0	0	0.82965	1	14605	14605		9.544	3.3382	1	19134000			27076	1207	17222	17313	25992	25992					-0.015970034419069634
REHQNFYEA	9	Unmodified	_REHQNFYEA_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	HCT116MG_D190212_S1	1	597.2705688476562	2	597.270344	1192.52613	0.46509	0.00027779	0.12113	7.2345E-05	0.58622	0.00035013	597.2703769694584	25.431	0.36446	25.431	25.197	25.561	0					12	6	3	0	0	0	0.037825	1	9167	9167		80.676	62.53	1	18413000			27077	4806	17223	17314	25993	25993					-0.062427051986333026
REHQNFYEA	9	Unmodified	_REHQNFYEA_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	HCT116MG_D190212_S1	1	398.5157470703125	3	398.515988	1192.52613	-0.1812	-7.2211E-05	-0.099071	-3.9481E-05	-0.28027	-0.00011169	398.51585178053335	25.431	0.26039	25.431	25.301	25.561	0					6	4	2	0	0	0	0.45684	1	9175	9175		14.218	10.899	1	6880200			27078	4806	17223	17314	25994	25994					-0.062427051986333026
REHQNFYEA	9	Unmodified	_REHQNFYEA_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	HCT116MG_D190212_S2	2	597.2591552734375	2	597.270344	1192.52613	0.80342	0.00047986	-0.2735	-0.00016336	0.52992	0.0003165	597.2701938000117	25.945	0.41618	25.576	25.394	25.81	-0.36914					20	7	4	0	0	0	0.016412	2	9338	9338;9348		100.09	77.354	1	198040000			27079	4806	17223	17314	25995;25996	25995					-0.062427051986333026
REHQNFYEA	9	Unmodified	_REHQNFYEA_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	HCT116MG_D190212_S2	2	398.515869140625	3	398.515988	1192.52613	0.13252	5.2812E-05	-0.27455	-0.00010941	-0.14203	-5.6601E-05	398.5158499457587	25.941	0.31182	25.572	25.394	25.706	-0.36914					11	5	3	0	0	0	0.10244	1	9369	9369		46.022	35.707	1	32089000			27080	4806	17223	17314	25997	25997					-0.062427051986333026
REHQNFYEA	9	Unmodified	_REHQNFYEA_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	HCT116MG_D190212_S3	3	597.270263671875	2	597.270344	1192.52613	0.69544	0.00041537	-0.38361	-0.00022912	0.31184	0.00018625	597.2700609096989	25.544	0.36398	25.438	25.256	25.62	-0.10618					15	6	4	0	0	0	0.029121	1	9129	9129		87.258	54.473	1	36969000			27081	4806	17223	17314	25998	25998					-0.062427051986333026
REHQNFYEA	9	Unmodified	_REHQNFYEA_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	HCT116MG_D190212_S3	3	398.5159606933594	3	398.515988	1192.52613	0.086348	3.4411E-05	-0.21981	-8.7598E-05	-0.13346	-5.3187E-05	398.51581712192154	25.544	0.31198	25.438	25.308	25.62	-0.10618					8	5	2	0	0	0	0.1935	1	9131	9131		32.898	24.453	1	9037800			27082	4806	17223	17314	25999	25999					-0.062427051986333026
REHQNFYEA	9	Unmodified	_REHQNFYEA_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	HCT116MG_D190212_S4	4	597.2715454101562	2	597.270344	1192.52613	1.117	0.00066713	-0.47434	-0.00028331	0.64263	0.00038383	597.2701665985511	25.884	0.31222	25.594	25.412	25.724	-0.29022					10	5	3	0	0	0	0.064006	1	9200	9200		67.838	45.18	1	9762300			27083	4806	17223	17314	26000	26000					-0.062427051986333026
REHRHRRRYYY	11	Unmodified	_REHRHRRRYYY_					0	0	0			REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF	REV__ENST00000507405.5_1_5:138755893-138773164:-|nuORF	MSMS	HCT116MG_D190212_S2	2	564.8319702148438	3	564.629451	1690.86652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.243	1	34.068	33.568	34.568	-0.17512								0	0	0	0.9619	1	12733	12733		0.094841	0.094841	1		+		27084	13301	17224	17315	26001	26001					0.04872366245945159
REIDDYIVQA	10	Unmodified	_REIDDYIVQA_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MSMS	HCT116MG_D190212_S2	2	611.3096923828125	2	611.309135	1220.60372	0.66739	0.00040798	0.30578	0.00018693	0.97318	0.00059491	611.3097321149506	40.436	0.36172	40.366	40.209	40.571	-0.069626					16	6	3	0	0	0	0.051175	1	15261	15261		86.332	42.559	1	49538000			27085	4776	17225	17316	26002	26002					0.002238879469132371
REIDDYIVQA	10	Unmodified	_REIDDYIVQA_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MSMS	HCT116MG_D190212_S3	3	611.3096313476562	2	611.309135	1220.60372	0.55131	0.00033702	-0.20266	-0.00012389	0.34865	0.00021313	611.3091835277392	40.658	0.26065	40.357	40.215	40.476	-0.30161					11	4	3	0	0	0	0.73519	1	15145	15145		17.443	8.6972	1	8334400			27086	4776	17225	17316	26003	26003					0.002238879469132371
REIDDYIVQA	10	Unmodified	_REIDDYIVQA_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MATCH	HCT116MG_D190212_S4	4		2	611.309135	1220.60372	0.86132	0.00052653	-0.66447	-0.0004062	0.19685	0.00012034	611.3085729492366	40.77	0.18403	40.392	40.234	40.418	-0.37828	0.020438	-0.00016189	NaN	86.332	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3275000			27087	4776	17225	17316							0.002238879469132371
REIEKNPPA	9	Unmodified	_REIEKNPPA_					0	0	0		ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	MULTI-MSMS	HCT116MG_D190212_S3	3	527.2881469726562	2	527.288005	1052.56146	0.39477	0.00020816	0.16443	8.6704E-05	0.5592	0.00029486	527.2879820555398	15.501	0.36485	15.586	15.456	15.821	0.085423					14	6	3	0	0	0	0.066823	1	5095	5095		66.457	26.217	1	2017200			27088	6565	17226	17317	26004	26004					0.03727957329192577
REIESSPQY	9	Unmodified	_REIESSPQY_					0	0	0		ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|2|0.29|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000564284.1_1_16:28841101-28842119:+|nuORF;ENST00000570284.1_1_16:28840745-28842349:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ATXN2L|p.T504Hfs*33|1|0.12|ENSG00000168488|chr16:28832387-28832388|-/C|frameshift_variant	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	554.767333984375	2	554.767103	1107.51965	0.41748	0.00023161	0.049797	2.7626E-05	0.46728	0.00025923	554.7670164952058	25.117	0.41593	24.742	24.556	24.972	-0.37521					19	7	4	0	0	0	0.095931	1	9038	9038		71.708	42.626	1	27790000			27089	234	17227	17318	26005	26005					-0.029806431499764585
REIESSPQY	9	Unmodified	_REIESSPQY_					0	0	0		ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|2|0.29|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000564284.1_1_16:28841101-28842119:+|nuORF;ENST00000570284.1_1_16:28840745-28842349:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ATXN2L|p.T504Hfs*33|1|0.12|ENSG00000168488|chr16:28832387-28832388|-/C|frameshift_variant	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	ATXN2L|p.P636Rfs*19|1|0.48|ENSG00000168488|chr16:28833301-28833301|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	554.767103	1107.51965	0.56167	0.0003116	0.28018	0.00015543	0.84184	0.00046703	554.7672363199399	24.699	0.26131	24.699	24.516	24.778	0	-0.02125	0.00017925	NaN	71.708	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5219800			27090	234	17227	17318							-0.029806431499764585
REIESTDTA	9	Unmodified	_REIESTDTA_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2432556152344	2	511.24346	1020.47237	-0.094968	-4.8552E-05	0.43089	0.00022029	0.33592	0.00017174	511.2433710702033	18.744	0.31169	18.38	18.217	18.529	-0.36325					12	5	3	0	0	0	0.082877	1	6471	6471		61.602	11.669	1	15640000			27091	3848	17228	17319	26006	26006					-0.03704922421002266
REIESTDTA	9	Unmodified	_REIESTDTA_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	HCT116MG_D190212_S3	3	511.2431945800781	2	511.24346	1020.47237	-0.014763	-7.5474E-06	-0.0063325	-3.2374E-06	-0.021095	-1.0785E-05	511.24326974141337	17.927	0.41603	18.006	17.843	18.259	0.07819					10	7	2	0	0	0	0.05892	1	6066	6066		70.332	20.778	1	9699700			27092	3848	17228	17319	26007	26007					-0.03704922421002266
REIESTDTA	9	Unmodified	_REIESTDTA_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	HCT116MG_D190212_S4	4	511.24298095703125	2	511.24346	1020.47237	0.077245	3.9491E-05	-0.30942	-0.00015819	-0.23217	-0.0001187	511.24315583178424	18.149	0.15588	17.974	17.896	18.051	-0.17501					4	2	2	0	0	0	0.14362	1	6094	6094		49.554	7.5987	1	2887400			27093	3848	17228	17319	26008	26008					-0.03704922421002266
REIEWIRSRRY	11	Unmodified	_REIEWIRSRRY_					0	0	0		ENST00000551270.1_1_12:104237536-104277386:-|nuORF;nc|ENSG00000214198|Q6P2S7|TTC41P	ENST00000551270.1_1_12:104237536-104277386:-|nuORF	ENST00000551270.1_1_12:104237536-104277386:-|nuORF	MSMS	HCT116MG_D190212_S2	2	782.427001953125	2	782.428773	1562.84299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.361	1	30.077	29.577	30.577	-0.28453								0	0	0	0.96149	1	11159	11159		0.30703	0	1				27094	8756	17229	17320	26009	26009					0.08408507688727695
REIFFPETA	9	Unmodified	_REIFFPETA_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	555.28515625	2	555.284931	1108.55531	0.60849	0.00033789	0.28472	0.0001581	0.89322	0.00049599	555.2849975224808	46.598	0.35978	46.487	46.317	46.677	-0.11122					13	6	3	0	0	0	0.14362	1	17763	17763		49.554	31.408	1	28149000			27095	1707	17230	17321	26010	26010					0.0053743909768400044
REIFFPETA	9	Unmodified	_REIFFPETA_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	555.2849731445312	2	555.284931	1108.55531	0.50031	0.00027782	-0.40382	-0.00022423	0.0965	5.3585E-05	555.2846450545255	46.836	0.36499	46.522	46.333	46.698	-0.31405					13	6	3	0	0	0	0.051033	1	17580	17580		74.2	46.571	1	7873700			27096	1707	17230	17321	26011	26011					0.0053743909768400044
REIFFPETA	9	Unmodified	_REIFFPETA_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MSMS	HCT116MG_D190212_S4	4	555.28515625	2	555.284931	1108.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.99	1	46.619	46.119	47.119	-0.37038								0	0	0	0.67254	1	17366	17366		20.415	4.2654	1				27097	1707	17230	17321	26012	26012					0.0053743909768400044
REIGENHEA	9	Unmodified	_REIGENHEA_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;ENST00000561268.5_1_15:44859616-44864898:-|nuORF	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	HCT116MG_D190212_S2	2	527.7496948242188	2	527.749244	1053.48394	0.34129	0.00018012	0.14415	7.6076E-05	0.48544	0.00025619	527.7492757065801	16.102	0.36584	15.768	15.637	16.003	-0.33451					11	6	2	0	0	0	0.0068462	1	5406	5406		121.5	61.429	1	23899000			27098	1918	17231	17322	26013	26013					-0.040666806070021266
REILKTYAA	9	Unmodified	_REILKTYAA_					0	0	0		nc|ENSG00000167333|Q6AZZ1-2|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF;TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68	nc|ENSG00000167333|Q6AZZ1-2|TRIM68	nc|ENSG00000167333|Q6AZZ1-2|TRIM68	MULTI-MSMS	HCT116MG_D190212_S3	3	532.808349609375	2	532.808574	1063.60259	0.37712	0.00020094	-0.041599	-2.2164E-05	0.33553	0.00017877	532.8084250492441	28.095	0.20852	27.907	27.777	27.985	-0.18847					8	3	3	0	0	0	0.24534	1	10180	10180		36.506	10.238	1	8061500			27099	4915	17232	17323	26014	26014					0.07333718368658992
REILKTYAA	9	Unmodified	_REILKTYAA_					0	0	0		nc|ENSG00000167333|Q6AZZ1-2|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF;TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68	nc|ENSG00000167333|Q6AZZ1-2|TRIM68	nc|ENSG00000167333|Q6AZZ1-2|TRIM68	MULTI-MSMS	HCT116MG_D190212_S4	4	532.8087768554688	2	532.808574	1063.60259	0.40625	0.00021646	0.1421	7.5714E-05	0.54836	0.00029217	532.8086322462667	28.317	0.20826	27.986	27.856	28.064	-0.33138					6	3	2	0	0	0	0.37942	2	10203	10193;10203		23.79	7.6407	1	4265800			27100	4915	17232	17323	26015;26016	26016					0.07333718368658992
REILKTYAA	9	Unmodified	_REILKTYAA_					0	0	0		nc|ENSG00000167333|Q6AZZ1-2|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF;TRIM68|p.H390Tfs*6|1|0.36|ENSG00000167333|chr11:4600566-4600566|G/-|frameshift_variant;ENSG00000167333|ENST00000300747|TRIM68	nc|ENSG00000167333|Q6AZZ1-2|TRIM68	nc|ENSG00000167333|Q6AZZ1-2|TRIM68	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	532.808574	1063.60259	0.46915	0.00024996	-0.7355	-0.00039188	-0.26635	-0.00014192	532.8081230612586	28.242	0.15573	27.912	27.822	27.977	-0.32987	-0.022647	-0.00036856	NaN	36.506	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17298000			27101	4915	17232	17323							0.07333718368658992
REINHFFCEA	10	Unmodified	_REINHFFCEA_					0	0	0		ENSG00000175143|ENST00000642005|OR2T1;nc|ENSG00000175143|O43869|OR2T1	ENSG00000175143|ENST00000642005|OR2T1	ENSG00000175143|ENST00000642005|OR2T1	MULTI-MSMS	HCT116MG_D190212_S2	2	633.2903442382812	2	633.290222	1264.56589	0.46619	0.00029524	-0.56955	-0.00036069	-0.10335	-6.5452E-05	633.2898490123127	54.263	0.20564	54.073	53.945	54.15	-0.1894					8	3	3	0	0	0	0.73913	1	20900	20900		17.113	8.3675	1	48471000			27102	5365	17233	17324	26017	26017					-0.05580901519533654
REINTILKA	9	Unmodified	_REINTILKA_					0	0	0		ENST00000492390.5_1_1:1636243-1639660:-|nuORF;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-6|CDK11B;CDK11B|p.K551Qfs*7|1|0.06|ENSG00000248333|chr1:1637148-1637161|TCGTGCAGGTGTTT/-|frameshift_variant;ENST00000468800.5_1_1:1635923-1638967:-|nuORF;CDK11A|p.K539Qfs*7|1|0.56|ENSG00000008128|chr1:1704290-1704303|TCGTGCAGGTGTTT/-|frameshift_variant;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF;ENST00000474916.1_1_1:1636243-1639664:-|nuORF;nc|ENSG00000248333|P21127|CDK11B	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	353.8708801269531	3	353.216991	1056.62914	0.19207	6.7842E-05	-0.46633	-0.00016471	-0.27426	-9.6873E-05	353.21675749343524	33.364	0.15401	33.171	33.071	33.225	-0.19297					4	2	2	0	0	0	0.25384	1	12384	12384		35.612	15.031	1	9197800			27103	389	17234	17325	26018	26018					0.10309407260001535
REINTILKA	9	Unmodified	_REINTILKA_					0	0	0		ENST00000492390.5_1_1:1636243-1639660:-|nuORF;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-6|CDK11B;CDK11B|p.K551Qfs*7|1|0.06|ENSG00000248333|chr1:1637148-1637161|TCGTGCAGGTGTTT/-|frameshift_variant;ENST00000468800.5_1_1:1635923-1638967:-|nuORF;CDK11A|p.K539Qfs*7|1|0.56|ENSG00000008128|chr1:1704290-1704303|TCGTGCAGGTGTTT/-|frameshift_variant;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF;ENST00000474916.1_1_1:1636243-1639664:-|nuORF;nc|ENSG00000248333|P21127|CDK11B	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.322265625	2	529.321848	1056.62914	0.50328	0.00026639	0.14773	7.8196E-05	0.651	0.00034459	529.3218799185217	33.464	0.25463	33.174	33.049	33.304	-0.29013					11	4	3	0	0	0	0.070423	1	12284	12284		78.06	2.2997	1	46388000			27104	389	17234	17325	26019	26019					0.10309407260001535
REIQVQHPA	9	Unmodified	_REIQVQHPA_					0	0	0		CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;ENST00000368256.3_1_1:156302875-156308050:-|nuORF	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	539.2938232421875	2	539.293622	1076.57269	0.45218	0.00024386	-0.17164	-9.2563E-05	0.28054	0.00015129	539.2935124111438	21.112	0.36387	20.729	20.546	20.91	-0.38288					12	6	4	0	0	0	0.17423	1	7415	7415		43.982	15.487	1	38716000			27105	365	17235	17326	26020	26020					0.03746779423318003
REIQVQHPA	9	Unmodified	_REIQVQHPA_					0	0	0		CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;ENST00000368256.3_1_1:156302875-156308050:-|nuORF	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	539.293701171875	2	539.293622	1076.57269	0.37233	0.00020079	-0.053854	-2.9043E-05	0.31847	0.00017175	539.2934486507323	20.237	0.36444	20.285	20.103	20.468	0.048107					11	6	3	0	0	0	0.13424	1	6989	6989		51.415	25.147	1	21712000			27106	365	17235	17326	26021	26021					0.03746779423318003
REIQVQHPA	9	Unmodified	_REIQVQHPA_					0	0	0		CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant;CCT3|p.A379Lfs*9|1|0.21|ENSG00000163468|chr1:156312061-156312061|C/-|frameshift_variant;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.K197Nfs*23|1|0.17|ENSG00000163468|chr1:156320857-156320857|T/-|frameshift_variant;ENST00000368256.3_1_1:156302875-156308050:-|nuORF	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	CCT3|p.L350Ffs*9|1|0.49|ENSG00000163468|chr1:156312146-156312147|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	539.2938842773438	2	539.293622	1076.57269	0.45405	0.00024486	-0.86509	-0.00046654	-0.41105	-0.00022168	539.2930327663726	20.632	0.41571	20.43	20.3	20.716	-0.20133					12	7	3	0	0	0	0.28073	1	7075	7075		32.786	4.2912	1	8180700			27107	365	17235	17326	26022	26022					0.03746779423318003
REKAFIHKS	9	Unmodified	_REKAFIHKS_					0	0	0		nc|ENSG00000204519|Q7Z340-3|ZNF551;nc|ENSG00000204519|Q7Z340-2|ZNF551;ENSG00000204519|ENST00000282296|ZNF551	nc|ENSG00000204519|Q7Z340-3|ZNF551	nc|ENSG00000204519|Q7Z340-3|ZNF551	MULTI-MSMS	HCT116MG_D190212_S2	2	558.3197631835938	2	558.31964	1114.62473	0.3047	0.00017012	0.15899	8.8767E-05	0.46369	0.00025889	558.3196660254599	16.259	0.26137	15.924	15.794	16.055	-0.33451					8	4	3	0	0	0	0.62464	1	5485	5485		13.615	0	1	7491700			27108	6340	17236	17327	26023	26023					0.07199942837087292
REKAFIHKS	9	Unmodified	_REKAFIHKS_					0	0	0		nc|ENSG00000204519|Q7Z340-3|ZNF551;nc|ENSG00000204519|Q7Z340-2|ZNF551;ENSG00000204519|ENST00000282296|ZNF551	nc|ENSG00000204519|Q7Z340-3|ZNF551	nc|ENSG00000204519|Q7Z340-3|ZNF551	MULTI-MSMS	HCT116MG_D190212_S2	2	372.54876708984375	3	372.548852	1114.62473	-0.26943	-0.00010038	0.20801	7.7495E-05	-0.061421	-2.2882E-05	372.5489160448058	16.259	0.20915	15.924	15.794	16.003	-0.33451					5	3	2	0	0	0	0.65048	1	5486	5486		8.2864	3.3894	1	5155600			27109	6340	17236	17327	26024	26024					0.07199942837087292
REKDLRGVTP	10	Unmodified	_REKDLRGVTP_					0	0	0		ENST00000602905.1_1_19:49651881-49653392:+|nuORF;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	390.8909606933594	3	390.891166	1169.65167	-0.11121	-4.347E-05	0.1277	4.9917E-05	0.016493	6.4468E-06	390.8911176251938	21.732	0.52118	21.732	21.385	21.906	0					16	9	2	0	0	0	0.099369	1	7643	7643		57.204	33.24	1	7308700			27110	5455	17237	17328	26025	26025					0.07363006657624283
REKDLRGVTP	10	Unmodified	_REKDLRGVTP_					0	0	0		ENST00000602905.1_1_19:49651881-49653392:+|nuORF;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	585.8328247070312	2	585.833111	1169.65167	0.5763	0.00033761	-0.035903	-2.1033E-05	0.54039	0.00031658	585.8330974963548	21.776	0.46891	21.776	21.385	21.854	0					10	8	2	0	0	0	0.75557	1	7694	7694		15.739	8.6369	1	4584600			27111	5455	17237	17328	26026	26026					0.07363006657624283
REKDLRGVTP	10	Unmodified	_REKDLRGVTP_					0	0	0		ENST00000602905.1_1_19:49651881-49653392:+|nuORF;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	586.3333129882812	2	585.833111	1169.65167	0.65505	0.00038375	-0.065051	-3.8109E-05	0.59	0.00034564	585.8331222848963	22.341	0.72791	21.956	21.426	22.154	-0.3852					35	13	4	0	0	0	0.034465	2	7830	7805;7830		98.73	56.774	1	38005000			27112	5455	17237	17328	26027;26028	26028					0.07363006657624283
REKDLRGVTP	10	Unmodified	_REKDLRGVTP_					0	0	0		ENST00000602905.1_1_19:49651881-49653392:+|nuORF;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	390.8909606933594	3	390.891166	1169.65167	0.21903	8.5616E-05	-0.14833	-5.798E-05	0.070701	2.7636E-05	390.89105337949104	22.317	0.72748	21.932	21.479	22.206	-0.3852					33	13	3	0	0	0	0.036884	1	7841	7841		76.416	50.419	1	45811000			27113	5455	17237	17328	26029	26029					0.07363006657624283
REKDLRGVTP	10	Unmodified	_REKDLRGVTP_					0	0	0		ENST00000602905.1_1_19:49651881-49653392:+|nuORF;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	586.3338012695312	2	585.833111	1169.65167	0.42386	0.00024831	-0.043376	-2.5411E-05	0.38048	0.0002229	585.8330192857184	21.475	0.63253	21.493	21.167	21.799	0.018446					21	11	3	0	0	0	0.48296	1	7465	7465		36.395	17.674	1	4271100			27114	5455	17237	17328	26030	26030					0.07363006657624283
REKDLRGVTP	10	Unmodified	_REKDLRGVTP_					0	0	0		ENST00000602905.1_1_19:49651881-49653392:+|nuORF;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	390.8909912109375	3	390.891166	1169.65167	-0.10845	-4.2394E-05	0.13997	5.4715E-05	0.031519	1.2321E-05	390.8911990963296	21.516	0.78867	21.535	21.011	21.799	0.018446					30	14	3	0	0	0	0.049927	1	7477	7477		68.484	33.404	1	8662400			27115	5455	17237	17328	26031	26031					0.07363006657624283
REKDLRGVTP	10	Unmodified	_REKDLRGVTP_					0	0	0		ENST00000602905.1_1_19:49651881-49653392:+|nuORF;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	ENST00000602905.1_1_19:49651881-49653392:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	390.8909606933594	3	390.891166	1169.65167	0.097868	3.8256E-05	-0.15412	-6.0244E-05	-0.056252	-2.1989E-05	391.22549482880385	21.922	0.57093	21.704	21.322	21.893	-0.21832					15	10	2	0	0	0	0.59588	1	7555	7555		19.987	9.0879	1	3118000			27116	5455	17237	17328	26032	26032					0.07363006657624283
REKDSVMSA	9	Unmodified	_REKDSVMSA_					0	0	0		ENSG00000159111|ENST00000351111|MRPL10;nc|ENSG00000159111|Q7Z7H8-2|MRPL10	ENSG00000159111|ENST00000351111|MRPL10	ENSG00000159111|ENST00000351111|MRPL10	MULTI-MSMS	HCT116MG_D190212_S2	2	511.75042724609375	2	511.750398	1021.48624	0.27743	0.00014197	0.29611	0.00015153	0.57354	0.00029351	511.7502976453577	20.642	0.26388	20.262	20.13	20.394	-0.37949					10	4	3	0	0	0	0.10482	1	7227	7227		57.249	21.122	1	22529000			27117	4397	17238	17329	26033	26033					-0.023639681935492263
REKEEEPVA	9	Unmodified	_REKEEEPVA_					0	0	0		HMCES|p.R350C|1|0.22|ENSG00000183624|chr3:129304808-129304808|C/T|missense_variant;ENSG00000183624|ENST00000383463|HMCES	HMCES|p.R350C|1|0.22|ENSG00000183624|chr3:129304808-129304808|C/T|missense_variant	HMCES|p.R350C|1|0.22|ENSG00000183624|chr3:129304808-129304808|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	543.775146484375	2	543.774928	1085.5353	0.42811	0.0002328	0.09729	5.2904E-05	0.5254	0.0002857	543.7749393738084	18.068	0.26087	17.711	17.545	17.806	-0.35647					10	4	3	0	0	0	0.13316	1	6195	6195		51.63	18.844	1	16181000			27118	5728	17239	17330	26034	26034					-0.004043566329301029
REKEFKAKEAA	11	Unmodified	_REKEFKAKEAA_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	HCT116MG_D190212_S2	2	653.859619140625	2	653.859326	1305.7041	0.44531	0.00029117	0.11992	7.8408E-05	0.56523	0.00036958	653.859311387355	15.32	0.41652	14.993	14.863	15.279	-0.32684					19	7	4	0	0	0	0.032399	1	5082	5082		130.95	66.021	1	55905000			27119	3440	17240	17331	26035	26035					0.06347545000562604
REKEFKAKEAA	11	Unmodified	_REKEFKAKEAA_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	HCT116MG_D190212_S2	2	436.241943359375	3	436.241976	1305.7041	-0.084545	-3.6882E-05	0.038042	1.6595E-05	-0.046503	-2.0287E-05	436.24198761485883	15.32	0.46874	14.993	14.863	15.331	-0.32684					19	8	4	0	0	0	0.0018816	1	5083	5083		151.85	111.14	1	34464000			27120	3440	17240	17331	26036	26036					0.06347545000562604
REKEFKAKEAA	11	Unmodified	_REKEFKAKEAA_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	653.859326	1305.7041	0.76649	0.00050118	-0.46799	-0.000306	0.2985	0.00019518	653.8595271143801	15.165	0.15666	15.165	15.066	15.223	0	0.085956	-0.00074411	NaN	130.95	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1350400			27121	3440	17240	17331							0.06347545000562604
REKEFNKGP	9	Unmodified	_REKEFNKGP_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000545930.5_1_11:61091835-61095006:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S1	1	552.7933349609375	2	552.793455	1103.57236	0.44728	0.00024725	-0.17101	-9.4532E-05	0.27627	0.00015272	552.7932438851351	16.434	0.41642	16.434	16.109	16.525	0					12	7	2	0	0	0	0.29516	1	5548	5548		31.268	0.6318	1	1830800			27122	4969	17241	17332	26037	26037					0.024713597034633494
REKEFNKGP	9	Unmodified	_REKEFNKGP_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000545930.5_1_11:61091835-61095006:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S1	1	368.86474609375	3	368.864729	1103.57236	-0.14581	-5.3786E-05	-0.068975	-2.5442E-05	-0.21479	-7.9228E-05	368.8646535329672	16.426	0.46851	16.426	16.109	16.577	0					11	8	2	0	0	0	0.45684	1	5564	5564		18.721	11.684	1	1868700			27123	4969	17241	17332	26038	26038					0.024713597034633494
REKEFNKGP	9	Unmodified	_REKEFNKGP_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000545930.5_1_11:61091835-61095006:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	552.7938842773438	2	552.793455	1103.57236	0.37297	0.00020617	0.091116	5.0368E-05	0.46408	0.00025654	552.7935101803467	16.982	0.78071	16.633	16.145	16.926	-0.34843					32	14	3	0	0	0	0.17423	1	5698	5698		43.982	9.0498	1	14922000			27124	4969	17241	17332	26039	26039					0.024713597034633494
REKEFNKGP	9	Unmodified	_REKEFNKGP_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000545930.5_1_11:61091835-61095006:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	368.8648986816406	3	368.864729	1103.57236	-0.19783	-7.2973E-05	0.074123	2.7341E-05	-0.12371	-4.5632E-05	368.8646895853162	16.978	0.52045	16.63	16.354	16.874	-0.3479					20	9	3	0	0	0	0.0040527	1	5745	5745		124.95	88.558	1	7975000			27125	4969	17241	17332	26040	26040					0.024713597034633494
REKKNSLHKV	10	Unmodified	_REKKNSLHKV_					0	0	0			REV__nc|ENSG00000137757|P51878-4|CASP5	REV__nc|ENSG00000137757|P51878-4|CASP5	MULTI-MSMS	HCT116MG_D190212_S1	1	413.5819091796875	3	413.582444	1237.7255	-0.082384	-3.4073E-05	-0.9473	-0.00039179	-1.0297	-0.00042586	413.5819719734683	51.906	0.26453	51.906	51.704	51.968	0					11	4	3	0	0	0	0.88195	1	19842	19842		1.4551	0	1	21722000	+		27126	17143	17242	17333	26041	26041					0.11614974819917734
REKLLLKPSRW	11	Unmodified	_REKLLLKPSRW_					0	0	0			REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF	REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	476.17559814453125	3	475.961144	1424.8616	0.11759	5.5968E-05	0.045393	2.1605E-05	0.16298	7.7573E-05	475.9610842764158	49.265	0.65913	49.111	48.884	49.543	-0.15405					41	12	5	0	0	0	0.36618	1	18937	18937		0.45452	0	1	1458499999.9999998	+		27127	14659	17243	17334	26042	26042					0.16616669330596778
REKLYKGISWV	11	Unmodified	_REKLYKGISWV_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MSMS	HCT116MG_D190212_S1	1	689.8939819335938	2	689.895712	1377.77687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.485	1	49.485	48.985	49.985	0								0	0	0	0.94755	1	18857	18857		7.609	3.4194	1				27128	2887	17244	17335	26043	26043					0.10309298793981725
REKMFVEEV	9	Unmodified	_REKMFVEEV_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	583.797607421875	2	583.797349	1165.58014	0.30494	0.00017802	0.28539	0.00016661	0.59033	0.00034463	583.797235778257	37.666	0.30777	37.563	37.435	37.743	-0.10318					10	5	3	0	0	0	0.030601	1	14133	14133		103.42	40.847	1	94181000			27129	1546	17245	17336	26044	26044					0.003977509087235376
REKMFVEEV	9	Unmodified	_REKMFVEEV_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	584.2996826171875	2	583.797349	1165.58014	0.54505	0.0003182	0.64525	0.0003767	1.1903	0.0006949	583.7977595328036	37.896	0.13742	37.595	37.523	37.66	-0.30137					12	8	2	0	0	0	0.030039	1	14013	14013		86.332	21.097	1	16127000			27130	1546	17245	17336	26045	26045					0.003977509087235376
REKNPDMVA	9	Unmodified	_REKNPDMVA_					0	0	0		ENSG00000125977|ENST00000374980|EIF2S2;ENST00000447161.1_1_3:184963605-184963701:-|nuORF	ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	MSMS	HCT116MG_D190212_S1	1	530.2661743164062	2	530.266216	1058.51788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.436	1	20.436	19.936	20.936	0								0	0	0	0.47756	1	7142	7142		29.841	4.4413	1				27131	2923	17246	17337	26046	26046					-0.009039754396098942
REKNPDMVA	9	Unmodified	_REKNPDMVA_					0	0	0		ENSG00000125977|ENST00000374980|EIF2S2;ENST00000447161.1_1_3:184963605-184963701:-|nuORF	ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	MULTI-MSMS	HCT116MG_D190212_S2	2	530.266357421875	2	530.266216	1058.51788	0.40829	0.0002165	-0.23258	-0.00012333	0.1757	9.3169E-05	530.2661373311323	21.112	0.36428	20.729	20.494	20.859	-0.38288					15	6	3	0	0	0	0.026999	1	7414	7414		89.401	58.132	1	36398000			27132	2923	17246	17337	26047	26047					-0.009039754396098942
REKNPDMVA	9	Unmodified	_REKNPDMVA_					0	0	0		ENSG00000125977|ENST00000374980|EIF2S2;ENST00000447161.1_1_3:184963605-184963701:-|nuORF	ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	MSMS	HCT116MG_D190212_S3	3	530.2665405273438	2	530.266216	1058.51788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.044	1	20.092	19.592	20.592	0.048107								0	0	0	0.033127	1	6909	6909		79.596	33.575	1				27133	2923	17246	17337	26048	26048					-0.009039754396098942
REKNPDMVA	9	Unmodified	_REKNPDMVA_					0	0	0		ENSG00000125977|ENST00000374980|EIF2S2;ENST00000447161.1_1_3:184963605-184963701:-|nuORF	ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2669067382812	2	530.266216	1058.51788	0.46833	0.00024834	-0.15927	-8.4457E-05	0.30906	0.00016388	530.2661090431517	20.489	0.31206	20.287	20.144	20.456	-0.20133					10	5	2	0	0	0	0.1935	1	7019	7019		41.956	10.687	1	4281100			27134	2923	17246	17337	26049	26049					-0.009039754396098942
REKRTTVVA	9	Unmodified	_REKRTTVVA_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S2	2	353.8804016113281	3	353.88049	1058.61964	-0.27239	-9.6393E-05	-0.10424	-3.6888E-05	-0.37663	-0.00013328	353.8804098073893	12.326	0.18672	12.036	11.914	12.101	-0.28953					12	8	2	0	0	0	0.68668	1	4017	4017		6.1918	2.0023	1	771540			27135	1931	17247	17338	26050	26050					0.09267638974483816
REKRTTVVA	9	Unmodified	_REKRTTVVA_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S2	2	530.3173217773438	2	530.317097	1058.61964	0.45511	0.00024135	-0.088881	-4.7135E-05	0.36623	0.00019422	530.3170330831365	16.832	0.36424	16.49	16.308	16.672	-0.34183					12	6	3	0	0	0	0.066362	1	5693	5693		80.676	29.046	1	42094000			27136	1931	17247	17338	26051	26051					0.09267638974483816
REKRTTVVA	9	Unmodified	_REKRTTVVA_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-SECPEP	HCT116MG_D190212_S2	2	354.2149353027344	3	353.88049	1058.61964	-0.12031	-4.2577E-05	0.15909	5.6298E-05	0.038773	1.3721E-05	353.8804199633959	16.832	0.25997	16.49	16.36	16.62	-0.34183					9	4	3	0	0	0	0.21474	1	5705	5705		21.59	3.2171	1	12920000			27137	1931	17247	17338	26052	26052					0.09267638974483816
REKRTTVVA	9	Unmodified	_REKRTTVVA_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MATCH	HCT116MG_D190212_S1	1		3	353.88049	1058.61964	-0.1181	-4.1792E-05	-0.34846	-0.00012331	-0.46656	-0.00016511	353.88034914021597	16.257	0.15615	16.257	16.161	16.317	0	-0.11681	-0.00035269	NaN	21.59	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2230200			27138	1931	17247	17338							0.09267638974483816
REKRVKPKL	9	Unmodified	_REKRVKPKL_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MSMS	HCT116MG_D190212_S2	2	385.25567626953125	3	385.25578	1152.74551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.572	1	18.209	17.709	18.709	-0.36325								0	0	0	0.76886	1	6390	6390		4.897	0.36815	1		+		27139	12708	17248	17339	26053	26053					0.17524770550562607
REKVQVTA	8	Unmodified	_REKVQVTA_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S1	1	465.77203369140625	2	465.771991	929.529429	0.10245	4.7719E-05	0.5797	0.00027001	0.68215	0.00031773	465.7721198055459	18.845	0.20847	18.845	18.714	18.923	0					6	3	2	0	0	0	0.29007	1	6506	6506		60.074	1.3951	1	17480000			27140	1027;18285	17249	17340	26054	26054					0.061845896460340555
REKVQVTA	8	Unmodified	_REKVQVTA_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	465.7720031738281	2	465.771991	929.529429	0.19989	9.3101E-05	-0.016422	-7.6489E-06	0.18346	8.5452E-05	465.7718922745555	19.544	0.31176	19.174	19.044	19.356	-0.3695					13	5	4	0	0	0	0.17427	2	6804	6804;6841		78.728	1.2156	1	61908000			27141	1027;18285	17249	17340	26055;26056	26055					0.061845896460340555
RELDAILSA	9	Unmodified	_RELDAILSA_					0	0	0			REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	494.2770080566406	2	494.277106	986.53966	0.1034	5.1111E-05	-0.097526	-4.8205E-05	0.0058788	2.9057E-06	494.2770219824038	40.23	0.31237	39.929	39.747	40.06	-0.30137					9	5	2	0	0	0	0.034046	1	14935	14935		82.529	5.7045	1	18309000	+		27142	15340	17250	17341	26057	26057					0.04585152580625618
RELDAILSA	9	Unmodified	_RELDAILSA_					0	0	0			REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	494.277106	986.53966	0.1034	5.1111E-05	-0.097526	-4.8205E-05	0.0058788	2.9057E-06	494.2770219824038	40.23	0.31237	39.929	39.747	40.06	-0.30137	-0.0093555	-4.1359E-05	NaN	82.529	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18309000	+		27143	15340	17250	17341							0.04585152580625618
RELDEHELDY	10	Unmodified	_RELDEHELDY_					0	0	0		ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant;ZC3H18|p.R680Qfs*14|1|0.38|ENSG00000158545|chr16:88624732-88624733|-/C|frameshift_variant;ZC3H18|p.Q804Sfs*15|1|0.32|ENSG00000158545|chr16:88628051-88628051|C/-|frameshift_variant;ENSG00000158545|ENST00000301011|ZC3H18;ZC3H18|p.A315Qfs*18|2|0.25|ENSG00000158545|chr16:88599796-88599796|A/-|frameshift_variant	ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	659.798828125	2	659.799131	1317.58371	0.77226	0.00050954	-1.4024	-0.00092531	-0.63016	-0.00041578	659.7980060978381	33.609	0.31117	33.609	33.452	33.763	0					11	5	3	0	0	0	0.68623	1	12463	12463		21.537	0	1	7585800			27144	4378	17251	17342	26058	26058					-0.06237907783702212
RELEEEHEL	9	Unmodified	_RELEEEHEL_					0	0	0			REV__ENSG00000233757|ENST00000425953|ZNF892	REV__ENSG00000233757|ENST00000425953|ZNF892	MSMS	HCT116MG_D190212_S4	4	395.2124938964844	3	395.19117	1182.55168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.76	1	33.376	32.876	33.876	-0.38426								0	0	0	0.76677	1	12301	12301		8.4443	0.49891	1		+		27145	14326	17252	17343	26059	26059					-0.03229275466856052
RELEESNDHAN	11	Unmodified	_RELEESNDHAN_					0	0	0			REV__nc|ENSG00000065413|Q8N8A2-4|ANKRD44	REV__nc|ENSG00000065413|Q8N8A2-4|ANKRD44	MSMS	HCT116MG_D190212_S3	3	657.3880615234375	2	657.289462	1312.56437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.071	1	24.009	23.509	24.509	-0.061449								0	0	0	0.94145	1	8530	8530		10.8	0.72558	1		+		27146	9944	17253	17344	26060	26060					-0.07940864074589626
RELEHLQYTT	10	Unmodified	_RELEHLQYTT_					0	0	0			REV__ENSG00000134438|ENST00000334889|RAX	REV__ENSG00000134438|ENST00000334889|RAX	MULTI-MSMS	HCT116MG_D190212_S3	3	645.328125	2	645.327859	1288.64116	0.70777	0.00045675	-0.34839	-0.00022482	0.35939	0.00023192	645.3276222533182	29.82	1.4056	29.584	28.719	30.124	-0.23655					61	26	3	0	0	0	0.61405	1	10807	10807		27.223	4.5652	1	15801000	+		27147	12055	17254	17345	26061	26061					0.008389792125399254
RELEHLQYTT	10	Unmodified	_RELEHLQYTT_					0	0	0			REV__ENSG00000134438|ENST00000334889|RAX	REV__ENSG00000134438|ENST00000334889|RAX	MULTI-MSMS	HCT116MG_D190212_S4	4	645.3282470703125	2	645.327859	1288.64116	0.46981	0.00030318	-0.059825	-3.8607E-05	0.40998	0.00026457	645.327811028573	30.202	1.4837	29.845	28.558	30.041	-0.3571					66	29	3	0	0	0	0.65928	1	10787	10787		23.79	5.4167	1	10374000	+		27148	12055	17254	17345	26062	26062					0.008389792125399254
RELEVQHPA	9	Unmodified	_RELEVQHPA_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S1	1	539.7859497070312	2	539.78563	1077.55671	0.49361	0.00026644	0.021725	1.1727E-05	0.51533	0.00027817	539.785571883247	21.882	0.26076	21.882	21.75	22.011	0					11	4	4	0	0	0	0.1535	1	7741	7741		47.594	5.7548	1	19783000			27149	4280	17255	17346	26063	26063					0.02103073186435722
RELEVQHPA	9	Unmodified	_RELEVQHPA_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7864379882812	2	539.78563	1077.55671	0.61398	0.00033142	0.2184	0.00011789	0.83238	0.0004493	539.7857088250718	22.462	0.31057	22.077	21.895	22.206	-0.3852					11	5	3	0	0	0	0.018739	1	7961	7961		97.741	40.019	1	94272000			27150	4280	17255	17346	26064	26064					0.02103073186435722
RELEVQHPA	9	Unmodified	_RELEVQHPA_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S3	3	539.785888671875	2	539.78563	1077.55671	0.46894	0.00025313	0.025301	1.3657E-05	0.49424	0.00026679	539.7855966707632	21.755	0.41934	21.773	21.588	22.008	0.018446					17	7	4	0	0	0	0.018739	1	7598	7598		97.741	40.019	1	70508000			27151	4280	17255	17346	26065	26065					0.02103073186435722
RELEVQHPA	9	Unmodified	_RELEVQHPA_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S4	4	539.785888671875	2	539.78563	1077.55671	0.45787	0.00024715	0.024422	1.3183E-05	0.48229	0.00026034	539.7855670452715	22.09	0.31164	21.862	21.676	21.988	-0.22777					12	5	3	0	0	0	0.031831	1	7665	7665		84.522	34.968	1	20748000			27152	4280	17255	17346	26066	26066					0.02103073186435722
RELNTKKCS	9	Unmodified	_RELNTKKCS_					0	0	0		ENST00000473607.5_1_3:125854214-125879740:-|nuORF	ENST00000473607.5_1_3:125854214-125879740:-|nuORF	ENST00000473607.5_1_3:125854214-125879740:-|nuORF	MSMS	HCT116MG_D190212_S3	3	360.1929931640625	3	360.193969	1077.56008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.829	1	21.829	21.329	22.329	0.00074577								0	0	0	0.74083	1	7626	7626		12.175	0.68004	1				27153	8180	17256	17347	26067	26067					0.024399999687602758
RELPFTKSA	9	Unmodified	_RELPFTKSA_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;ENST00000506175.1_1_4:69188417-69195784:-|nuORF	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	HCT116MG_D190212_S1	1	524.79296875	2	524.792924	1047.57129	0.53175	0.00027906	-0.28448	-0.00014929	0.24727	0.00012977	524.7930925690323	29.331	0.36505	29.331	29.112	29.477	0					8	6	2	0	0	0	0.28785	1	10751	10751		32.037	6.0168	1	4207700			27154	1440	17257	17348	26068	26068					0.049411453345555856
RELPFTKSA	9	Unmodified	_RELPFTKSA_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;ENST00000506175.1_1_4:69188417-69195784:-|nuORF	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	524.7933349609375	2	524.792924	1047.57129	0.42959	0.00022544	0.10556	5.5398E-05	0.53515	0.00028084	524.7929597044215	29.824	0.51617	29.523	29.237	29.753	-0.30095					17	9	4	0	0	0	0.053079	1	10945	10945		73.196	27.456	1	55087000			27155	1440	17257	17348	26069	26069					0.049411453345555856
RELPFTKSA	9	Unmodified	_RELPFTKSA_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;ENST00000506175.1_1_4:69188417-69195784:-|nuORF	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7933349609375	2	524.792924	1047.57129	0.52834	0.00027727	-0.18243	-9.5738E-05	0.34591	0.00018153	524.7927791410034	29.82	0.42437	29.584	29.344	29.768	-0.23655					16	7	3	0	0	0	0.035298	1	10833	10833		81.915	28.511	1	19753000			27156	1440	17257	17348	26070	26070					0.049411453345555856
RELPFTKSA	9	Unmodified	_RELPFTKSA_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;ENST00000506175.1_1_4:69188417-69195784:-|nuORF	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7930908203125	2	524.792924	1047.57129	0.34879	0.00018304	-0.23445	-0.00012304	0.11434	6.0004E-05	524.7928587727629	30.084	0.36409	29.727	29.441	29.805	-0.3571					14	6	3	0	0	0	0.14268	1	10864	10864		49.742	11.127	1	9681800			27157	1440	17257	17348	26071	26071					0.049411453345555856
REMGQFYEA	9	Unmodified	_REMGQFYEA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MSMS	HCT116MG_D190212_S3	3	565.7503051757812	2	565.750398	1129.48624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.684	1	35.385	34.885	35.885	-0.29922								0	0	0	0.29838	1	13160	13160		40.239	17.503	1				27158	2088	17258	17349	26072	26072					-0.07331968193557259
REMPGVWGA	9	Unmodified	_REMPGVWGA_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2852478027344	2	501.744919	1001.47529	0.21583	0.00010829	0.82343	0.00041315	1.0393	0.00052144	501.7451751055764	40.968	0.28716	40.968	40.846	41.133	0					8	5	2	0	0	0	0.13316	2	15381	15381;15431		51.63	19.324	1	16032000			27159	466	17259	17350	26073;26074	26073					-0.02539325777161139
REMPGVWGA	9	Unmodified	_REMPGVWGA_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	HCT116MG_D190212_S2	2	501.7447814941406	2	501.744919	1001.47529	0.4507	0.00022614	0.23686	0.00011884	0.68756	0.00034498	501.74491670729776	40.956	0.51608	40.886	40.673	41.19	-0.069626					20	9	3	0	0	0	0.0048275	1	15452	15452		139.14	74.902	1	162110000			27160	466	17259	17350	26075	26075					-0.02539325777161139
REMPGVWGA	9	Unmodified	_REMPGVWGA_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	HCT116MG_D190212_S2	2	1002.483154296875	1	1002.48256	1001.47529	0.56247	0.00056387	0.15373	0.00015411	0.7162	0.00071797	1002.4826654532973	40.94	0.31091	40.87	40.725	41.036	-0.069626					9	5	2	0	0	0	0.012496	1	15475	15475		107.19	46.797	1	28579000			27161	466	17259	17350	26076	26076					-0.02539325777161139
REMPGVWGA	9	Unmodified	_REMPGVWGA_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	HCT116MG_D190212_S3	3	501.745361328125	2	501.744919	1001.47529	0.44067	0.00022111	-0.022617	-1.1348E-05	0.41806	0.00020976	501.7448859836945	41.221	0.46878	40.919	40.632	41.1	-0.30185					21	8	3	0	0	0	0.034046	1	15289	15289		82.529	34.183	1	45366000			27162	466	17259	17350	26077	26077					-0.02539325777161139
REMPGVWGA	9	Unmodified	_REMPGVWGA_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	HCT116MG_D190212_S3	3	1002.4837646484375	1	1002.48256	1001.47529	0.59461	0.00059609	-0.21343	-0.00021396	0.38118	0.00038213	1002.4827249759813	41.201	0.26126	40.899	40.736	40.997	-0.30185					8	4	3	0	0	0	0.0077497	1	15329	15329		118.89	56.322	1	5495000			27163	466	17259	17350	26078	26078					-0.02539325777161139
REMPVKVEA	9	Unmodified	_REMPVKVEA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S1	1	529.7869873046875	2	529.786784	1057.55902	0.34753	0.00018412	0.23463	0.0001243	0.58215	0.00030842	529.7867988835733	26.527	0.36432	26.527	26.345	26.709	0					17	6	4	0	0	0	0.0064252	1	9589	9589		125.18	71.777	1	102680000			27164	6381	17260	17351	26079	26079					0.03253785599895309
REMPVKVEA	9	Unmodified	_REMPVKVEA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S1	1	353.52691650390625	3	353.526948	1057.55902	-0.050791	-1.7956E-05	0.066	2.3333E-05	0.015209	5.3768E-06	353.52691419449377	26.579	0.26009	26.579	26.397	26.657	0					7	4	2	0	0	0	0.13387	1	9613	9613		42.068	25.502	1	8500300			27165	6381	17260	17351	26080	26080					0.03253785599895309
REMPVKVEA	9	Unmodified	_REMPVKVEA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S2	2	529.787109375	2	529.786784	1057.55902	0.40134	0.00021262	-0.18687	-9.9001E-05	0.21447	0.00011362	529.7866970366041	26.932	0.52629	26.579	26.396	26.923	-0.35254					28	9	5	0	0	0	0.0068462	1	9745	9745		121.5	67.671	1	826930000			27166	6381	17260	17351	26081	26081					0.03253785599895309
REMPVKVEA	9	Unmodified	_REMPVKVEA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S2	2	353.5271911621094	3	353.526948	1057.55902	-0.17609	-6.2254E-05	0.00042424	1.4998E-07	-0.17567	-6.2104E-05	353.52687244753116	26.932	0.31629	26.579	26.396	26.713	-0.35254					12	5	3	0	0	0	0.0158	1	9758	9758		84.738	58.717	1	114410000			27167	6381	17260	17351	26082	26082					0.03253785599895309
REMPVKVEA	9	Unmodified	_REMPVKVEA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S2	2	1058.5672607421875	1	1058.56629	1057.55902	0.55841	0.00059111	0.016719	1.7699E-05	0.57513	0.00060881	1058.5666065816695	26.932	0.26297	26.579	26.45	26.713	-0.35254					10	4	3	0	0	0	0.0056292	1	9773	9773		132.13	68.907	1	32701000			27168	6381	17260	17351	26083	26083					0.03253785599895309
REMPVKVEA	9	Unmodified	_REMPVKVEA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S3	3	529.7867431640625	2	529.786784	1057.55902	0.5413	0.00028677	-0.20686	-0.00010959	0.33444	0.00017718	529.7866683738241	26.69	0.57267	26.541	26.307	26.88	-0.14924					27	10	4	0	0	0	0.010825	1	9567	9567		111.31	67.451	1	313740000			27169	6381	17260	17351	26084	26084					0.03253785599895309
REMPVKVEA	9	Unmodified	_REMPVKVEA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MSMS	HCT116MG_D190212_S3	3	353.52679443359375	3	353.526948	1057.55902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.691	1	26.541	26.041	27.041	-0.14924								0	0	0	0.034768	1	9587	9587		72.59	47.708	1				27170	6381	17260	17351	26085	26085					0.03253785599895309
REMPVKVEA	9	Unmodified	_REMPVKVEA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S4	4	529.7868041992188	2	529.786784	1057.55902	0.45415	0.0002406	0.082591	4.3756E-05	0.53674	0.00028436	529.7867101537151	26.924	0.41567	26.613	26.431	26.847	-0.3114					20	7	4	0	0	0	0.010825	1	9597	9597		111.31	57.905	1	87461000			27171	6381	17260	17351	26086	26086					0.03253785599895309
REMPVKVEA	9	Unmodified	_REMPVKVEA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S4	4	353.5268859863281	3	353.526948	1057.55902	-0.037664	-1.3315E-05	0.038581	1.3639E-05	0.00091626	3.2392E-07	353.5268821802208	26.899	0.2596	26.588	26.483	26.742	-0.3114					9	4	3	0	0	0	0.085458	1	9617	9617		57.204	34.546	1	5430900			27172	6381	17260	17351	26087	26087					0.03253785599895309
REMPVKVEA	9	Oxidation (M)	_REM(Oxidation (M))PVKVEA_		REM(1)PVKVEA		REM(72)PVKVEA	0	0	1		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7847900390625	2	537.784241	1073.55393	0.35595	0.00019143	0.044232	2.3788E-05	0.40018	0.00021521	537.784327857234	21.89	0.31254	21.505	21.323	21.635	-0.38503					14	5	4	0	0	0	0.056114	1	7721	7721		71.708	42.626	1	51328000			27173	6381	17260	17352	26088	26088		137			0.020094817372637408
REMRGLTSA	9	Unmodified	_REMRGLTSA_					0	0	0		ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2164001464844	2	510.766383	1019.51821	0.24668	0.000126	0.16179	8.2639E-05	0.40848	0.00020864	510.7661936326701	23.274	0.25977	22.888	22.726	22.986	-0.3852					8	4	2	0	0	0	0.10482	2	8271	8271;8277		57.249	36.795	1	27246000			27174	5346	17261	17353	26089;26090	26089					0.0092344428026081
REMRGLTSA	9	Unmodified	_REMRGLTSA_					0	0	0		ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	510.7665100097656	2	510.766383	1019.51821	0.12658	6.4653E-05	0.12066	6.163E-05	0.24724	0.00012628	510.76640240900434	22.413	0.31283	22.401	22.237	22.55	-0.011898					13	5	4	0	0	0	0.14376	2	7871	7862;7871		49.527	24.485	1	17408000			27175	5346	17261	17353	26091;26092	26092					0.0092344428026081
REMRGLTSA	9	Unmodified	_REMRGLTSA_					0	0	0		ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	510.7668762207031	2	510.766383	1019.51821	0.081895	4.1829E-05	0.56662	0.00028941	0.64851	0.00033124	510.76666337424075	22.814	0.26126	22.576	22.445	22.706	-0.23758					9	4	3	0	0	0	0.30874	1	7963	7963		29.841	0.759	1	9787700			27176	5346	17261	17353	26093	26093					0.0092344428026081
REMTILGSA	9	Unmodified	_REMTILGSA_					0	0	0		ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	HCT116MG_D190212_S3	3	489.25775146484375	2	489.257859	976.501166	0.16958	8.2969E-05	-0.044002	-2.1528E-05	0.12558	6.144E-05	489.25781514291276	40.543	0.26003	40.241	40.111	40.371	-0.30161					6	4	2	0	0	0	0.012496	1	15083	15083		107.19	29.038	1	8702700			27177	4247	17262	17354	26094	26094					0.011975236744547146
REMTILGSA	9	Unmodified	_REMTILGSA_					0	0	0		ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	HCT116MG_D190212_S4	4	489.2579040527344	2	489.257859	976.501166	0.0040233	1.9684E-06	0.39621	0.00019385	0.40023	0.00019582	489.25792840200336	40.708	0.28764	40.33	40.182	40.47	-0.37828					7	5	2	0	0	0	0.090581	1	14962	14962		60.074	10.141	1	4458300			27178	4247	17262	17354	26095	26095					0.011975236744547146
RENDTWSQL	9	Unmodified	_RENDTWSQL_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MSMS	HCT116MG_D190212_S2	2	574.7702026367188	2	574.770177	1147.5258	0.33186	0.00019074	-0.07479	-4.2987E-05	0.25707	0.00014776	574.770011498487	34.119	0.46709	33.944	33.76	34.227	-0.17511					21	8	4	0	0	0	0.26031	1	12684	12684		34.932	4.2955	1	118530000	+		27179	12925	17263	17355	26096	26096					-0.04206124918482601
RENFYQNWKAY	11	Unmodified	_RENFYQNWKAY_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	HCT116MG_D190212_S4	4	506.9082946777344	3	506.908997	1517.70516	0.23778	0.00012053	-0.89346	-0.0004529	-0.65567	-0.00033237	506.9081694550269	25.844	0.52039	25.554	25.255	25.776	-0.29022					14	9	2	0	0	0	0.7259	1	9228	9228		6.6235	0	1	2100900			27180	1005	17264	17356	26097	26097					-0.032982406305336553
RENGQLHMV	9	Unmodified	_RENGQLHMV_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2726440429688	2	542.271832	1082.52911	0.49599	0.00026896	-0.16819	-9.1206E-05	0.3278	0.00017776	542.7729186888362	28.333	0.20732	28.003	27.874	28.081	-0.32987					5	3	2	0	0	0	0.17622	1	10339	10339		43.772	19.099	1	20544000			27181	2507	17265	17357	26098	26098					-0.00885153345461731
RENISNAQA	9	Unmodified	_RENISNAQA_					0	0	0		ENSG00000129245|ENST00000250113|FXR2;FXR2|p.P540Qfs*32|3|0.45|ENSG00000129245|chr17:7592804-7592804|G/-|frameshift_variant	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-MSMS	HCT116MG_D190212_S1	1	501.7518615722656	2	501.751787	1001.48902	0.51521	0.00025851	-0.30912	-0.0001551	0.20609	0.00010341	501.7516651098635	17.854	0.26065	17.854	17.724	17.985	0					6	4	2	0	0	0	0.1535	1	6126	6126		47.594	11.088	1	7419000			27182	3025	17266	17358	26099	26099					-0.011663767443792494
RENISNAQA	9	Unmodified	_RENISNAQA_					0	0	0		ENSG00000129245|ENST00000250113|FXR2;FXR2|p.P540Qfs*32|3|0.45|ENSG00000129245|chr17:7592804-7592804|G/-|frameshift_variant	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-MSMS	HCT116MG_D190212_S2	2	501.7519226074219	2	501.751787	1001.48902	0.12761	6.4028E-05	0.1909	9.5785E-05	0.31851	0.00015981	501.75178121868225	18.345	0.3136	17.982	17.851	18.165	-0.36325					8	5	2	0	0	0	0.034046	1	6323	6323		82.529	18.569	1	31798000			27183	3025	17266	17358	26100	26100					-0.011663767443792494
RENISNAQA	9	Unmodified	_RENISNAQA_					0	0	0		ENSG00000129245|ENST00000250113|FXR2;FXR2|p.P540Qfs*32|3|0.45|ENSG00000129245|chr17:7592804-7592804|G/-|frameshift_variant	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MSMS	HCT116MG_D190212_S3	3	501.7516784667969	2	501.751787	1001.48902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.488	1	17.57	17.07	18.07	0.081358								0	0	0	0.040848	1	5878	5878		72.968	21.338	1				27184	3025	17266	17358	26101	26101					-0.011663767443792494
RENPQEYPD	9	Unmodified	_RENPQEYPD_					0	0	0		nc|ENSG00000011114|Q9P203-5|BTBD7;ENSG00000011114|ENST00000334746|BTBD7	nc|ENSG00000011114|Q9P203-5|BTBD7	nc|ENSG00000011114|Q9P203-5|BTBD7	MULTI-MSMS	HCT116MG_D190212_S1	1	574.2540283203125	2	574.25436	1146.49417	0.54077	0.00031054	-0.61946	-0.00035573	-0.078699	-4.5193E-05	574.2538121949364	17.176	0.20855	17.176	17.046	17.255	0					5	3	2	0	0	0	0.71898	1	5859	5859		3.9444	0	1	2776000			27185	886	17267	17359	26102	26102					-0.0732211767242461
RENPRLIAS	9	Unmodified	_RENPRLIAS_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;GAPVD1|p.S186Ffs*2|1|0.33|ENSG00000165219|chr9:125302347-125302348|-/T|frameshift_variant	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	HCT116MG_D190212_S2	2	528.3019409179688	2	528.301447	1054.58834	0.4481	0.00023673	0.12977	6.8559E-05	0.57788	0.00030529	528.3013357620913	24.765	0.41567	24.387	24.188	24.604	-0.37856					15	7	3	0	0	0	0.029255	1	8885	8885		103.82	42.222	1	28739000			27186	4755	17268	17360	26103	26103					0.06323065940364359
RENPRLIAS	9	Unmodified	_RENPRLIAS_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;GAPVD1|p.S186Ffs*2|1|0.33|ENSG00000165219|chr9:125302347-125302348|-/T|frameshift_variant	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	HCT116MG_D190212_S3	3	528.3015747070312	2	528.301447	1054.58834	0.29277	0.00015467	0.25251	0.0001334	0.54527	0.00028807	528.3015209599535	24.105	0.41631	24.044	23.895	24.311	-0.061447					15	7	3	0	0	0	0.16686	1	8546	8546		55.235	20.303	1	12844000			27187	4755	17268	17360	26104	26104					0.06323065940364359
RENPRLIAS	9	Unmodified	_RENPRLIAS_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;GAPVD1|p.S186Ffs*2|1|0.33|ENSG00000165219|chr9:125302347-125302348|-/T|frameshift_variant	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	HCT116MG_D190212_S4	4	528.2269897460938	2	528.301447	1054.58834	0.61224	0.00032345	-0.26625	-0.00014066	0.346	0.00018279	528.3012050727584	24.532	0.41486	24.263	24.03	24.445	-0.26881					10	7	2	0	0	0	0.24849	1	8633	8633		9.544	2.8208	1	3991600			27188	4755	17268	17360	26105	26105					0.06323065940364359
RENRNLREA	9	Unmodified	_RENRNLREA_					0	0	0		PIBF1|p.L495Ifs*10|2|0.29|ENSG00000083535|chr13:72893937-72893938|-/A|frameshift_variant;ENSG00000083535|ENST00000326291|PIBF1	PIBF1|p.L495Ifs*10|2|0.29|ENSG00000083535|chr13:72893937-72893938|-/A|frameshift_variant	PIBF1|p.L495Ifs*10|2|0.29|ENSG00000083535|chr13:72893937-72893938|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	386.54278564453125	3	386.542649	1156.60612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.213	1	10.932	10.432	11.432	-0.28186								0	0	0	0.76906	1	3600	3600		4.1895	1.1172	1				27189	1432	17269	17361	26106	26106					0.034077811952329284
RENRYIVLA	9	Unmodified	_RENRYIVLA_					0	0	0		ENST00000593455.5_1_19:40486165-40487209:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4	ENST00000593455.5_1_19:40486165-40487209:+|nuORF	ENST00000593455.5_1_19:40486165-40487209:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	567.324951171875	2	567.324922	1132.63529	0.44148	0.00025046	0.39758	0.00022556	0.83906	0.00047602	567.3246317121408	36.816	0.25734	36.701	36.55	36.808	-0.11478					8	4	3	0	0	0	0.17622	1	13793	13793		43.772	15.286	1	31526000			27190	909	17270	17362	26107	26107					0.07427925491515452
RENTAYIQA	9	Unmodified	_RENTAYIQA_					0	0	0		nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40	nc|ENSG00000108406|Q8IX18-4|DHX40	nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2705078125	2	533.269813	1064.52507	0.39607	0.00021121	0.74786	0.00039881	1.1439	0.00061002	533.2701280673309	28.064	0.41722	27.876	27.725	28.142	-0.18847					13	7	3	0	0	0	0.30874	1	10143	10143		29.841	3.5724	1	6686600			27191	2159	17271	17363	26108	26108					-0.004609195675357114
REPCYSKSGP	10	Unmodified	_REPCYSKSGP_					0	0	0		ENSG00000160051|ENST00000291358|IQCC;nc|ENSG00000160051|Q4KMZ1-3|IQCC	ENSG00000160051|ENST00000291358|IQCC	ENSG00000160051|ENST00000291358|IQCC	MULTI-SECPEP	HCT116MG_D190212_S4	4	561.7619018554688	2	562.263673	1122.51279	0.22374	0.0001258	-0.26675	-0.00014998	-0.043002	-2.4179E-05	562.7649985708211	28.057	0.72793	27.726	27.388	28.116	-0.33138					17	13	2	0	0	0	0.30788	1	10068	10068		2.7352	1.0826	1	2443000			27192	4430	17272	17364	26109	26109					-0.04356279302214716
REPCYSKSGP	10	Unmodified	_REPCYSKSGP_					0	0	0		ENSG00000160051|ENST00000291358|IQCC;nc|ENSG00000160051|Q4KMZ1-3|IQCC	ENSG00000160051|ENST00000291358|IQCC	ENSG00000160051|ENST00000291358|IQCC	MULTI-MATCH	HCT116MG_D190212_S3	3		2	562.263673	1122.51279	0.46449	0.00026116	-0.15651	-8.7998E-05	0.30798	0.00017317	562.7652013509863	27.866	0.15604	27.678	27.569	27.725	-0.18847	-0.024108	8.2858E-05	NaN	2.7352	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	990950			27193	4430	17272	17364							-0.04356279302214716
REPESPPASAP	11	Unmodified	_REPESPPASAP_					0	0	0		TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant;TTC28|p.A2381Lfs*5|1|0.15|ENSG00000100154|chr22:27982526-27982526|C/-|frameshift_variant;ENSG00000100154|ENST00000397906|TTC28;ENST00000468807.1_1_22:29025506-29075759:-|nuORF;TTC28|p.D729Rfs*10|1|0.19|ENSG00000100154|chr22:28107660-28107661|-/T|frameshift_variant;TTC28|p.V1305Wfs*29|1|0.31|ENSG00000100154|chr22:28094099-28094099|C/-|frameshift_variant	TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant	TTC28|p.P1795Qfs*108|1|0.33|ENSG00000100154|chr22:27993379-27993379|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	569.280517578125	2	569.280377	1136.5462	0.41312	0.00023518	-0.13566	-7.7229E-05	0.27746	0.00015795	569.2802950284215	19.144	0.46807	19.213	18.927	19.395	0.069159					19	8	3	0	0	0	0.32604	1	6534	6534		61.602	19.289	1	15410000			27194	1670	17273	17365	26110	26110					-0.01660954258682068
REPPWLARP	9	Unmodified	_REPPWLARP_					0	0	0		CACNA1E|p.L1080Ffs*10|1|0.17|ENSG00000198216|chr1:181733725-181733726|-/T|frameshift_variant;CACNA1E|p.F1412Lfs*21|1|0.36|ENSG00000198216|chr1:181757026-181757027|-/C|frameshift_variant;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E	CACNA1E|p.L1080Ffs*10|1|0.17|ENSG00000198216|chr1:181733725-181733726|-/T|frameshift_variant	CACNA1E|p.L1080Ffs*10|1|0.17|ENSG00000198216|chr1:181733725-181733726|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	374.5446472167969	3	374.545331	1120.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.543	1	18.18	17.68	18.68	-0.36325								0	0	0	0.768	1	6379	6379		4.897	0	1				27195	305	17274	17366	26111	26111					0.058679601826497674
REPRLRRASSR	11	Unmodified	_REPRLRRASSR_					0	0	0			REV__ENST00000405737.2_2_13:41635295-41635541:-|nuORF	REV__ENST00000405737.2_2_13:41635295-41635541:-|nuORF	MSMS	HCT116MG_D190212_S2	2	692.4075317382812	2	692.405632	1382.79671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.498	1	44.413	43.913	44.913	-0.084797								0	0	0	0.95731	1	16900	16900		2.4985	1.0166	1		+		27196	15409	17275	17367	26112	26112					0.12062487577327374
REQAEAEVA	9	Unmodified	_REQAEAEVA_					0	0	0		nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000143549|P06753-4|TPM3	nc|ENSG00000143549|P06753-4|TPM3	MULTI-MSMS	HCT116MG_D190212_S1	1	501.7462463378906	2	501.74617	1001.47779	0.2566	0.00012875	0.28721	0.00014411	0.54381	0.00027285	501.7461594683918	19.243	0.26019	19.243	19.079	19.339	0					10	4	3	0	0	0	0.1535	1	6670	6670		47.594	3.7361	1	7025600			27197	9486	17276	17368	26113	26113					-0.02289198838525408
REQAEAEVA	9	Unmodified	_REQAEAEVA_					0	0	0		nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000143549|P06753-4|TPM3	nc|ENSG00000143549|P06753-4|TPM3	MULTI-MSMS	HCT116MG_D190212_S2	2	501.7465515136719	2	501.74617	1001.47779	0.41592	0.00020869	0.34651	0.00017386	0.76243	0.00038255	501.7461497572619	19.752	0.41522	19.377	19.246	19.661	-0.37503					14	7	2	0	0	0	0.026999	1	6876	6876		89.401	7.5105	1	38283000			27198	9486	17276	17368	26114	26114					-0.02289198838525408
REQAEAEVA	9	Unmodified	_REQAEAEVA_					0	0	0		nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000143549|P06753-4|TPM3	nc|ENSG00000143549|P06753-4|TPM3	MULTI-MSMS	HCT116MG_D190212_S3	3	501.74627685546875	2	501.74617	1001.47779	0.40091	0.00020116	0.019283	9.6754E-06	0.4202	0.00021083	501.7460741503341	18.884	0.62431	18.953	18.823	19.447	0.069159					20	11	3	0	0	0	0.026999	1	6445	6445		89.401	3.7592	1	45613000			27199	9486	17276	17368	26115	26115					-0.02289198838525408
REQAEAEVA	9	Unmodified	_REQAEAEVA_					0	0	0		nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000143549|P06753-4|TPM3	nc|ENSG00000143549|P06753-4|TPM3	MULTI-MSMS	HCT116MG_D190212_S3	3	1002.485107421875	1	1002.48506	1001.47779	0.54434	0.0005457	-0.0073958	-7.4141E-06	0.53695	0.00053828	1002.4851495248779	18.89	0.31234	18.959	18.823	19.135	0.069157					10	5	3	0	0	0	0.053544	1	6472	6472		72.968	20.7	1	2958400			27200	9486	17276	17368	26116	26116					-0.02289198838525408
REQAEAEVA	9	Unmodified	_REQAEAEVA_					0	0	0		nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-5|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000143549|P06753-4|TPM3	nc|ENSG00000143549|P06753-4|TPM3	MULTI-MSMS	HCT116MG_D190212_S4	4	501.7462463378906	2	501.74617	1001.47779	0.31198	0.00015653	0.045629	2.2894E-05	0.3576	0.00017943	501.7460791840765	19.217	0.36403	19.03	18.869	19.233	-0.18674					10	6	2	0	0	0	0.034046	1	6498	6498		82.529	17.294	1	11395000			27201	9486	17276	17368	26117	26117					-0.02289198838525408
REQEELLAP	9	Unmodified	_REQEELLAP_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MSMS	HCT116MG_D190212_S3	3	542.7852783203125	2	542.785296	1083.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.525	1	37.223	36.723	37.723	-0.30137								0	0	0	0.19493	1	13902	13902		51.63	0	1				27202	955	17277	17369	26118	26118					0.017602337466996687
REQEITAVQA	10	Unmodified	_REQEITAVQA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	572.8013305664062	2	572.801477	1143.5884	0.36064	0.00020658	-0.15969	-9.1472E-05	0.20095	0.0001151	572.8010801456859	27.722	0.25917	27.722	27.541	27.8	0					6	4	2	0	0	0	0.35466	1	10077	10077		51.488	22.051	1	10456000			27203	2909	17278	17370	26119	26119					0.0223502114972689
REQEITAVQA	10	Unmodified	_REQEITAVQA_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1;RRBP1|p.A628Gfs*69|1|0.35|ENSG00000125844|chr20:17621915-17621916|-/T|frameshift_variant	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	572.801477	1143.5884	0.41164	0.00023579	-0.053395	-3.0584E-05	0.35825	0.00020521	572.8013573405489	28.043	0.20821	27.855	27.725	27.933	-0.18847	0.066375	1.8448E-05	NaN	51.488	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3564800			27204	2909	17278	17370							0.0223502114972689
REQERAYIV	9	Unmodified	_REQERAYIV_					0	0	0		nc|ENSG00000168066|Q15637-5|SF1;nc|ENSG00000168066|Q15637-4|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;ENST00000482693.1_1_11:64540804-64545891:-|nuORF;SF1|p.P74Lfs*63|1|0.43|ENSG00000168066|chr11:64773445-64773445|G/-|frameshift_variant;SF1|p.S182Lfs*2|1|0.29|ENSG00000168066|chr11:64769552-64769552|C/-|frameshift_variant;nc|ENSG00000168066|Q15637-6|SF1	nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-5|SF1	MULTI-MSMS	HCT116MG_D190212_S2	2	582.312255859375	2	582.312012	1162.60947	0.1583	9.218E-05	1.1671	0.00067959	1.3254	0.00077177	582.3130427040466	30.108	0.41303	29.824	29.512	29.925	-0.28453					14	7	3	0	0	0	0.19011	1	11068	11068		42.312	13.231	1	29744000			27205	9539	17279	17371	26120	26120					0.034670312492153244
REQERAYIV	9	Unmodified	_REQERAYIV_					0	0	0		nc|ENSG00000168066|Q15637-5|SF1;nc|ENSG00000168066|Q15637-4|SF1;SF1|p.V573Sfs*23|1|0.22|ENSG00000168066|chr11:64766025-64766025|G/-|frameshift_variant;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;ENST00000482693.1_1_11:64540804-64545891:-|nuORF;SF1|p.P74Lfs*63|1|0.43|ENSG00000168066|chr11:64773445-64773445|G/-|frameshift_variant;SF1|p.S182Lfs*2|1|0.29|ENSG00000168066|chr11:64769552-64769552|C/-|frameshift_variant;nc|ENSG00000168066|Q15637-6|SF1	nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-5|SF1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	582.312012	1162.60947	0.67843	0.00039506	0.28601	0.00016655	0.96444	0.0005616	582.3120284705757	29.488	0.15628	29.488	29.373	29.529	0	-0.16811	-0.00051648	NaN	42.312	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4266000			27206	9539	17279	17371							0.034670312492153244
REQERQWRA	9	Unmodified	_REQERQWRA_					0	0	0		nc|ENSG00000278259|Q96H55-4|MYO19;ENSG00000278259|ENST00000614623|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	MULTI-MSMS	HCT116MG_D190212_S2	2	420.2178955078125	3	420.218165	1257.63267	-0.026081	-1.096E-05	-0.24481	-0.00010287	-0.27089	-0.00011383	420.2178716206779	20.027	0.25912	19.652	19.506	19.765	-0.37503					10	4	3	0	0	0	0.014973	1	6995	6995		101.54	44.34	1	19343000			27207	6689	17280	17372	26121	26121					0.014154700865447012
REQERQWRA	9	Unmodified	_REQERQWRA_					0	0	0		nc|ENSG00000278259|Q96H55-4|MYO19;ENSG00000278259|ENST00000614623|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	MULTI-MSMS	HCT116MG_D190212_S2	2	629.82373046875	2	629.823609	1257.63267	0.42882	0.00027008	-0.26265	-0.00016542	0.16617	0.00010466	629.8234572007995	20.011	0.25912	19.636	19.506	19.765	-0.37503					9	4	3	0	0	0	0.10505	1	6996	6996		61.09	42.717	1	19363000			27208	6689	17280	17372	26122	26122					0.014154700865447012
REQERRRWQQR	11	Unmodified	_REQERRRWQQR_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	HCT116MG_D190212_S2	2	814.9378051757812	2	814.435452	1626.85635	0.88424	0.00072015	0.79711	0.0006492	1.6813	0.0013693	814.9371224844733	28.023	0.20707	27.693	27.563	27.77	-0.32987					9	3	3	0	0	0	0.74191	1	10234	10234		0.96228	0.65524	1	20689000			27209	4414	17281	17373	26123	26123					0.06799758520674004
REQIDFLAA	9	Unmodified	_REQIDFLAA_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	HCT116MG_D190212_S1	1	531.783203125	2	531.782556	1061.55056	0.26578	0.00014134	1.5335	0.00081548	1.7993	0.00095682	531.7833416973984	47.518	0.19997	47.518	47.395	47.595	0					8	3	3	0	0	0	0.47413	1	18080	18080		18.373	2.5259	1	30550000			27210	1641	17282	17374	26124	26124					0.022245549548870258
REQIDFLAA	9	Unmodified	_REQIDFLAA_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	HCT116MG_D190212_S3	3	531.7830810546875	2	531.782556	1061.55056	0.2337	0.00012428	0.35752	0.00019012	0.59122	0.0003144	531.7826294307982	47.856	0.4686	47.541	47.359	47.828	-0.31525					19	8	4	0	0	0	0.053544	1	17969	17969		72.968	20.7	1	59184000			27211	1641	17282	17374	26125	26125					0.022245549548870258
REQIDFLAA	9	Unmodified	_REQIDFLAA_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	HCT116MG_D190212_S4	4	531.7828979492188	2	531.782556	1061.55056	0.48527	0.00025806	0.12052	6.4092E-05	0.6058	0.00032215	531.7826871109551	47.862	0.33331	47.493	47.341	47.674	-0.36907					16	6	4	0	0	0	0.090581	1	17708	17708		60.074	20.124	1	26206000			27212	1641	17282	17374	26126	26126					0.022245549548870258
REQLRQEQA	9	Unmodified	_REQLRQEQA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	579.3045654296875	2	579.304718	1156.59488	0.43567	0.00025239	-0.021427	-1.2413E-05	0.41424	0.00023997	579.3046619515244	16.728	0.26063	16.386	16.256	16.516	-0.34183					7	4	2	0	0	0	0.12465	1	5662	5662		53.317	18.385	1	17844000			27213	5492	17283	17375	26127	26127					0.022849591010981385
REQSDWAS	8	Unmodified	_REQSDWAS_					0	0	0		CNNM1|p.G311Afs*51|1|0.44|ENSG00000119946|chr10:99330315-99330315|G/-|frameshift_variant;CNNM1|p.G751Afs*29|1|0.49|ENSG00000119946|chr10:99377126-99377126|G/-|frameshift_variant;CNNM1|p.D894*|1|0.24|ENSG00000119946|chr10:99390310-99390311|AG/-|frameshift_variant;nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	CNNM1|p.G311Afs*51|1|0.44|ENSG00000119946|chr10:99330315-99330315|G/-|frameshift_variant	CNNM1|p.G311Afs*51|1|0.44|ENSG00000119946|chr10:99330315-99330315|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	489.71746826171875	2	489.717413	977.420273	0.45667	0.00022364	0.071449	3.499E-05	0.52812	0.00025863	489.7172062028308	26.082	0.31314	26.082	25.927	26.24	0					8	5	2	0	0	0	0.57666	1	9410	9410		34.402	2.2848	1	9670400			27214	497	17284	17376	26128	26128					-0.06934041044098649
REQSDWAS	8	Unmodified	_REQSDWAS_					0	0	0		CNNM1|p.G311Afs*51|1|0.44|ENSG00000119946|chr10:99330315-99330315|G/-|frameshift_variant;CNNM1|p.G751Afs*29|1|0.49|ENSG00000119946|chr10:99377126-99377126|G/-|frameshift_variant;CNNM1|p.D894*|1|0.24|ENSG00000119946|chr10:99390310-99390311|AG/-|frameshift_variant;nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	CNNM1|p.G311Afs*51|1|0.44|ENSG00000119946|chr10:99330315-99330315|G/-|frameshift_variant	CNNM1|p.G311Afs*51|1|0.44|ENSG00000119946|chr10:99330315-99330315|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	489.7174987792969	2	489.717413	977.420273	0.17124	8.3857E-05	0.18649	9.1326E-05	0.35772	0.00017518	489.71742279513796	26.463	0.41476	26.102	25.972	26.387	-0.36164					11	7	2	0	0	0	0.49192	1	9583	9583		41.84	12.758	1	51007000			27215	497	17284	17376	26129	26129					-0.06934041044098649
REQSDWAS	8	Unmodified	_REQSDWAS_					0	0	0		CNNM1|p.G311Afs*51|1|0.44|ENSG00000119946|chr10:99330315-99330315|G/-|frameshift_variant;CNNM1|p.G751Afs*29|1|0.49|ENSG00000119946|chr10:99377126-99377126|G/-|frameshift_variant;CNNM1|p.D894*|1|0.24|ENSG00000119946|chr10:99390310-99390311|AG/-|frameshift_variant;nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	CNNM1|p.G311Afs*51|1|0.44|ENSG00000119946|chr10:99330315-99330315|G/-|frameshift_variant	CNNM1|p.G311Afs*51|1|0.44|ENSG00000119946|chr10:99330315-99330315|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	489.717413	977.420273	0.45667	0.00022364	0.071449	3.499E-05	0.52812	0.00025863	489.7172062028308	26.082	0.31314	26.082	25.927	26.24	0	-0.010056	-8.5471E-05	NaN	41.84	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9670400			27216	497	17284	17376							-0.06934041044098649
RERAEIVGP	9	Unmodified	_RERAEIVGP_					0	0	0		ENST00000583359.1_1_17:80407582-80408586:-|nuORF	ENST00000583359.1_1_17:80407582-80408586:-|nuORF	ENST00000583359.1_1_17:80407582-80408586:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	513.7884521484375	2	513.788173	1025.56179	0.20595	0.00010581	-0.48746	-0.00025045	-0.28151	-0.00014464	513.7881044782123	29.927	0.72804	29.57	29.025	29.753	-0.3571					22	13	2	0	0	0	0.55919	1	10764	10764		13.508	0.46542	1	3583700			27217	8969	17285	17377	26130	26130					0.05003377049047231
RERELAEKY	9	Unmodified	_RERELAEKY_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000434096.1_1_2:58688403-58689123:-|nuORF;IK|p.M189Rfs*54|1|0.04|ENSG00000113141|chr5:140654559-140654560|-/AA|frameshift_variant	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-SECPEP	HCT116MG_D190212_S2	2	398.5924987792969	3	398.547288	1192.62004	-0.042979	-1.7129E-05	-0.84195	-0.00033556	-0.88493	-0.00035269	398.5470525149589	20.483	0.16058	20.103	20.023	20.183	-0.37949					4	2	2	0	0	0	0.20395	1	7146	7146		29.437	6.6622	1	7867900			27218	2369	17286	17378	26131	26131					0.031430139036501714
RERERYNHYPE	11	Unmodified	_RERERYNHYPE_					0	0	0			REV__ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	REV__ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	774.8655395507812	2	774.868745	1547.72294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.328	1	41.328	40.828	41.828	0								0	0	0	0.95954	1	15558	15558		1.3295	0.13619	1		+		27219	12786	17287	17379	26132	26132					-0.029015253756597303
RERESFLAP	9	Unmodified	_RERESFLAP_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MSMS	HCT116MG_D190212_S3	3	552.794189453125	2	552.793455	1103.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.629	1	34.332	33.832	34.832	-0.29707								0	0	0	0.10186	1	12753	12753		55.503	11.73	1				27220	1022	17288	17380	26133	26133					0.024713597034633494
RERGRDRK	8	Unmodified	_RERGRDRK_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MSMS	HCT116MG_D190212_S1	1	358.2071838378906	3	358.2076	1071.60097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.02	1	26.02	25.52	26.52	0								0	0	0	0.8837	1	9384	9384		6.2058	0	1				27221	1760	17289	17381	26134	26134					0.06803522123277617
RERHPGSFDVV	11	Unmodified	_RERHPGSFDVV_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000443195.1_1_1:20852889-20853234:+|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S2	2	433.89263916015625	3	433.558187	1297.65273	-0.29681	-0.00012869	0.062148	2.6945E-05	-0.23466	-0.00010174	433.8924728603005	30.338	0.20547	30.054	29.925	30.13	-0.28453					6	3	2	0	0	0	0.2731	1	11177	11177		49.159	36.932	1	33556000			27222	6199	17290	17382	26135	26135					0.01581221026503954
RERHPGSFDVV	11	Unmodified	_RERHPGSFDVV_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000443195.1_1_1:20852889-20853234:+|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S2	2	649.8334350585938	2	649.833643	1297.65273	0.33229	0.00021593	-0.9444	-0.0006137	-0.61211	-0.00039777	649.8330599714174	30.338	0.15379	30.054	29.976	30.13	-0.28453					4	2	2	0	0	0	0.63428	1	11180	11180		31.636	18.021	1	21670000			27223	6199	17290	17382	26136	26136					0.01581221026503954
RERHVEEKK	9	Unmodified	_RERHVEEKK_					0	0	0			REV__ENSG00000281406|ENST00000629624|BLACAT1	REV__ENSG00000281406|ENST00000629624|BLACAT1	MSMS	HCT116MG_D190212_S4	4	404.2431640625	3	404.226549	1209.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.774	1	55.462	54.962	55.962	-0.312								0	0	0	0.76998	1	20893	20893		0.96228	0	1		+		27224	14472	17291	17383	26137	26137					0.0613752488911814
RERHVEEKKRK	11	Unmodified	_RERHVEEKKRK_					0	0	0			REV__ENSG00000281406|ENST00000629624|BLACAT1	REV__ENSG00000281406|ENST00000629624|BLACAT1	MSMS	HCT116MG_D190212_S1	1	498.95941162109375	3	498.958574	1493.85389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.575	1	13.575	13.075	14.075	0								0	0	0	0.96208	1	4414	4414		0	0	1		+		27225	14472	17292	17384	26138	26138					0.12671910062999814
RERKREPRR	9	Unmodified	_RERKREPRR_					0	0	0		EPHA6|p.A287Gfs*21|1|0.1|ENSG00000080224|chr3:96987734-96987735|-/G|frameshift_variant;ENSG00000080224|ENST00000389672|EPHA6	EPHA6|p.A287Gfs*21|1|0.1|ENSG00000080224|chr3:96987734-96987735|-/G|frameshift_variant	EPHA6|p.A287Gfs*21|1|0.1|ENSG00000080224|chr3:96987734-96987735|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	428.2578125	3	428.256954	1281.74903	0.19411	8.3128E-05	0.65465	0.00028036	0.84875	0.00036348	428.25710335446604	52.282	1.7013	52.094	51.266	52.968	-0.18725					53	32	2	0	0	0	0.75193	2	19839	19839;20076		2.2828	0.23755	1	23684000			27226	1392	17293	17385	26139;26140	26139					0.11942833377111128
RERKREPRR	9	Unmodified	_RERKREPRR_					0	0	0		EPHA6|p.A287Gfs*21|1|0.1|ENSG00000080224|chr3:96987734-96987735|-/G|frameshift_variant;ENSG00000080224|ENST00000389672|EPHA6	EPHA6|p.A287Gfs*21|1|0.1|ENSG00000080224|chr3:96987734-96987735|-/G|frameshift_variant	EPHA6|p.A287Gfs*21|1|0.1|ENSG00000080224|chr3:96987734-96987735|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	428.256954	1281.74903	0.19411	8.3128E-05	0.65465	0.00028036	0.84875	0.00036348	428.25710335446604	52.282	1.7013	52.094	51.266	52.968	-0.18725	-0.075769	-5.9059E-05	NaN	2.2828	53	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23684000			27227	1392	17293	17385							0.11942833377111128
RERKREPRR	9	Unmodified	_RERKREPRR_					0	0	0		EPHA6|p.A287Gfs*21|1|0.1|ENSG00000080224|chr3:96987734-96987735|-/G|frameshift_variant;ENSG00000080224|ENST00000389672|EPHA6	EPHA6|p.A287Gfs*21|1|0.1|ENSG00000080224|chr3:96987734-96987735|-/G|frameshift_variant	EPHA6|p.A287Gfs*21|1|0.1|ENSG00000080224|chr3:96987734-96987735|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	428.256954	1281.74903	0.21203	9.0802E-05	0.98402	0.00042142	1.1961	0.00051222	428.25727365338355	52.586	1.2982	52.246	51.679	52.978	-0.34023	0.075769	0.00036412	NaN	2.2828	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3298900			27228	1392	17293	17385							0.11942833377111128
RERLGSPGP	9	Unmodified	_RERLGSPGP_					0	0	0			REV__ENST00000453168.5_1_3:31574222-31574351:+|nuORF	REV__ENST00000453168.5_1_3:31574222-31574351:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.7675476074219	2	484.76724	967.519927	0.065249	3.1631E-05	0.031737	1.5385E-05	0.096986	4.7016E-05	484.76735442236225	15.806	0.46997	15.471	15.271	15.741	-0.33451					13	8	3	0	0	0	0.21258	1	5298	5298		39.95	15.929	1	2821800	+		27229	15726	17294	17386	26141	26141					0.03486821360536396
RERNKLAAA	9	Unmodified	_RERNKLAAA_					0	0	0		nc|ENSG00000075426|P15408-3|FOSL2;nc|ENSG00000075426|P15408-2|FOSL2;ENSG00000075426|ENST00000264716|FOSL2;FOSB|p.R161H|1|0.57|ENSG00000125740|chr19:45471228-45471228|G/A|missense_variant;ENST00000590335.1_1_19:45974274-45974658:+|nuORF;ENST00000587358.1_1_19:45974364-45976267:+|nuORF;nc|ENSG00000125740|P53539-11|FOSB;nc|ENSG00000125740|P53539-7|FOSB;ENSG00000175592|ENST00000312562|FOSL1;nc|ENSG00000125740|P53539-10|FOSB;nc|ENSG00000125740|P53539-4|FOSB;nc|ENSG00000125740|P53539-3|FOSB;ENSG00000125740|ENST00000353609|FOSB	nc|ENSG00000075426|P15408-3|FOSL2	nc|ENSG00000075426|P15408-3|FOSL2	MULTI-MSMS	HCT116MG_D190212_S2	2	514.8013916015625	2	514.801614	1027.58868	0.13976	7.1951E-05	-0.10338	-5.3222E-05	0.036382	1.8729E-05	514.8014590846483	16.259	0.31354	15.924	15.794	16.107	-0.33451					9	5	3	0	0	0	0.34508	1	5466	5466		26.021	0	1	6543400			27230	1318	17295	17387	26142	26142					0.0759848566024175
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-MSMS	HCT116MG_D190212_S1	1	577.301513671875	2	577.301644	1152.58874	0.54244	0.00031315	-0.081515	-4.7059E-05	0.46092	0.00026609	577.3015813746996	20.357	0.93887	20.357	19.913	20.852	0					53	17	4	0	0	0	0.33844	2	7010	7010;7240		61.09	61.09	1	77365000			27231	3177	17296	17388	26143;26144	26143					0.01854440869578866
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-MSMS	HCT116MG_D190212_S1	1	385.203125	3	385.203522	1152.58874	-0.035313	-1.3603E-05	-0.15933	-6.1375E-05	-0.19464	-7.4978E-05	385.20338892192296	20.35	0.72993	20.35	19.966	20.696	0					32	13	4	0	0	0	0.67939	1	7080	7080		22.109	22.109	1	14038000			27232	3177	17296	17388	26145	26145					0.01854440869578866
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-MSMS	HCT116MG_D190212_S2	2	577.301513671875	2	577.301644	1152.58874	0.38676	0.00022328	-0.11784	-6.8028E-05	0.26892	0.00015525	577.3016027305092	20.957	1.0443	20.574	20.073	21.117	-0.38288					68	19	5	0	0	0	0.26301	2	7257	7257;7497		69.338	69.338	1	567550000			27233	3177	17296	17388	26146;26147	26146					0.01854440869578866
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-MSMS	HCT116MG_D190212_S2	2	385.2033996582031	3	385.203522	1152.58874	-0.050538	-1.9468E-05	-0.12492	-4.8121E-05	-0.17546	-6.7588E-05	385.20340553729227	21.002	0.78052	20.619	20.233	21.013	-0.38288					34	14	3	0	0	0	0.40188	1	7331	7331		42.068	27.85	1	76105000			27234	3177	17296	17388	26148	26148					0.01854440869578866
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-SECPEP	HCT116MG_D190212_S2	2	1154.09765625	1	1153.59601	1152.58874	0.46592	0.00053748	0.16285	0.00018786	0.62876	0.00072534	1153.5959457821002	20.971	0.41636	20.588	20.39	20.807	-0.38288					15	7	3	0	0	0	0.085815	1	7368	7368		96.936	47.381	1	9974200			27235	3177	17296	17388	26149	26149					0.01854440869578866
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-MSMS	HCT116MG_D190212_S3	3	577.3019409179688	2	577.301644	1152.58874	0.37849	0.0002185	0.052283	3.0183E-05	0.43078	0.00024869	577.301602882069	20.053	1.0415	20.101	19.634	20.676	0.048107					60	19	4	0	0	0	0.43983	2	7030	6807;7030		51.488	34.045	1	85920000			27236	3177	17296	17388	26150;26151	26151					0.01854440869578866
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-MSMS	HCT116MG_D190212_S3	3	385.20318603515625	3	385.203522	1152.58874	-0.14094	-5.4292E-05	-0.04693	-1.8078E-05	-0.18787	-7.2369E-05	385.2034134320296	20.083	0.83336	20.131	19.791	20.624	0.048109					41	15	4	0	0	0	0.6572	1	6869	6869		23.964	4.8202	1	25247000			27237	3177	17296	17388	26152	26152					0.01854440869578866
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-MSMS	HCT116MG_D190212_S4	4	577.3023681640625	2	577.301644	1152.58874	0.37824	0.00021836	-0.041347	-2.387E-05	0.3369	0.00019449	577.3015447637465	20.457	0.8835	20.256	19.833	20.716	-0.20133					43	16	4	0	0	0	0.50176	1	6958	6958		47.594	47.594	1	18956000			27238	3177	17296	17388	26153	26153					0.01854440869578866
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-MSMS	HCT116MG_D190212_S4	4	385.2034912109375	3	385.203522	1152.58874	0.073467	2.83E-05	-0.44818	-0.00017264	-0.37471	-0.00014434	385.20329251080267	20.513	0.46791	20.312	20.092	20.56	-0.20133					15	8	2	0	0	0	0.76634	1	7001	7001		14.838	7.3608	1	3983700			27239	3177	17296	17388	26154	26154					0.01854440869578866
RERPPEEVAA	10	Unmodified	_RERPPEEVAA_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	385.203522	1152.58874	-0.14094	-5.4292E-05	-0.04693	-1.8078E-05	-0.18787	-7.2369E-05	385.2034134320296	20.083	0.83336	20.131	19.791	20.624	0.048109	-0.2217	0.00010453	NaN	42.068	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25247000			27240	3177	17296	17388							0.01854440869578866
RERRDNYVP	9	Unmodified	_RERRDNYVP_					0	0	0		ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17;ENST00000561440.1_1_15:83207600-83207885:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	402.2108154296875	3	402.210899	1203.61087	-0.0036342	-1.4617E-06	-0.061899	-2.4896E-05	-0.065533	-2.6358E-05	402.21088740595206	21.146	0.32097	21.146	21.012	21.333	0					8	5	2	0	0	0	0.20983	1	7447	7447		31.636	18.78	1	8651100			27241	5686	17297	17389	26155	26155					0.017206653379844283
RERRDNYVP	9	Unmodified	_RERRDNYVP_					0	0	0		ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17;ENST00000561440.1_1_15:83207600-83207885:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	602.8129272460938	2	602.81271	1203.61087	0.57783	0.00034832	-0.024919	-1.5021E-05	0.55291	0.0003333	602.812698564368	21.89	0.36448	21.505	21.323	21.687	-0.38503					16	6	4	0	0	0	0.0064416	1	7729	7729		125.04	64.964	1	72154000			27242	5686	17297	17389	26156	26156					0.017206653379844283
RERRDNYVP	9	Unmodified	_RERRDNYVP_					0	0	0		ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17;ENST00000561440.1_1_15:83207600-83207885:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	402.21087646484375	3	402.210899	1203.61087	-0.18894	-7.5993E-05	0.12603	5.0692E-05	-0.062905	-2.5301E-05	402.21091638017555	21.89	0.36448	21.505	21.323	21.687	-0.38503					14	6	4	0	0	0	0.11363	1	7732	7732		44.392	24.405	1	56899000			27243	5686	17297	17389	26157	26157					0.017206653379844283
RERRDNYVP	9	Unmodified	_RERRDNYVP_					0	0	0		ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17;ENST00000561440.1_1_15:83207600-83207885:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	ENST00000561068.5_3_15:83205554-83208094:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	602.81271	1203.61087	0.54994	0.00033151	-0.071514	-4.311E-05	0.47842	0.0002884	602.8127353350495	21.164	0.26752	21.164	21.012	21.279	0	-0.17058	-4.9257E-05	NaN	125.04	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4113200			27244	5686	17297	17389							0.017206653379844283
RESCCQSP	8	Unmodified	_RESCCQSP_					0	0	0		ENST00000528335.5_1_8:12809592-12848451:+|nuORF	ENST00000528335.5_1_8:12809592-12848451:+|nuORF	ENST00000528335.5_1_8:12809592-12848451:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	455.1817932128906	2	455.181294	908.348036	0.09667	4.4002E-05	1.1973	0.000545	1.294	0.000589	455.1817505925131	17.719	0.62649	17.362	17.232	17.858	-0.35647					13	11	2	0	0	0	0.64404	1	6083	6083		28.487	0	1	4040000			27245	8602	17298	17390	26158	26158					-0.10980414713674236
RESFRGPR	8	Unmodified	_RESFRGPR_					0	0	0		BFSP2|p.A25E|1|0.12|ENSG00000170819|chr3:133400157-133400157|C/A|missense_variant	BFSP2|p.A25E|1|0.12|ENSG00000170819|chr3:133400157-133400157|C/A|missense_variant	BFSP2|p.A25E|1|0.12|ENSG00000170819|chr3:133400157-133400157|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	503.107666015625	2	502.772857	1003.53116	-0.3204	-0.00016109	0.65235	0.00032798	0.33195	0.00016689	502.77311682520383	15.493	0.38952	15.331	15.124	15.513	-0.16173					15	7	3	0	0	0	0.73076	1	5021	5021		19.439	0	1	6849700			27246	264	17299	17391	26159	26159					0.029536434546685086
RESGSGSVAW	10	Unmodified	_RESGSGSVAW_					0	0	0		ENST00000362065.8_1_15:31196097-31196858:+|nuORF	ENST00000362065.8_1_15:31196097-31196858:+|nuORF	ENST00000362065.8_1_15:31196097-31196858:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2196044921875	2	518.246338	1034.47812	0.248	0.00012853	0.1667	8.6394E-05	0.41471	0.00021492	518.2463937165439	29.001	0.61449	28.684	28.504	29.119	-0.31613					23	11	4	0	0	0	0.72678	1	10551	10551		18.146	5.6148	1	229540000			27247	7370	17300	17392	26160	26160					-0.03773779118660059
RESISRPPP	9	Unmodified	_RESISRPPP_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	HCT116MG_D190212_S2	2	519.787841796875	2	519.788173	1037.56179	0.2869	0.00014913	-0.11776	-6.1212E-05	0.16914	8.7915E-05	519.7880730025198	19.457	1.3026	19.087	18.784	20.086	-0.3695					37	24	2	0	0	0	0.37942	1	6770	6770		23.79	4.4278	1	7705000			27248	6406	17301	17393	26161	26161					0.04451377049053917
RESISRPPP	9	Unmodified	_RESISRPPP_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2901000976562	2	519.788173	1037.56179	0.27233	0.00014155	-0.13361	-6.9448E-05	0.13872	7.2107E-05	519.7882184181375	18.452	1.0411	18.529	18.257	19.298	0.076334					26	19	2	0	0	0	0.47413	1	6250	6250		18.373	1.4308	1	2879800			27249	6406	17301	17393	26162	26162					0.04451377049053917
RESIVLHGA	9	Unmodified	_RESIVLHGA_					0	0	0		ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	MULTI-MSMS	HCT116MG_D190212_S2	2	491.2773742675781	2	491.277441	980.540328	0.43703	0.00021471	-0.13596	-6.6793E-05	0.30108	0.00014791	491.27741226027325	27.559	0.25883	27.217	27.088	27.347	-0.34201					7	4	2	0	0	0	0.026999	1	10021	10021		89.401	35.568	1	38617000			27250	3870	17302	17394	26163	26163					0.049279920203161964
RESIVLHGA	9	Unmodified	_RESIVLHGA_					0	0	0		ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	MULTI-MSMS	HCT116MG_D190212_S3	3	491.27752685546875	2	491.277441	980.540328	0.18377	9.028E-05	0.28665	0.00014082	0.47041	0.0002311	491.2774856012606	27.258	0.31235	27.089	26.912	27.224	-0.16933					11	5	3	0	0	0	0.13424	1	9822	9822		51.415	11.466	1	9921100			27251	3870	17302	17394	26164	26164					0.049279920203161964
RESLASPVA	9	Unmodified	_RESLASPVA_					0	0	0		ENST00000373622.9_1_20:35807565-35812612:+|nuORF	ENST00000373622.9_1_20:35807565-35812612:+|nuORF	ENST00000373622.9_1_20:35807565-35812612:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	465.2559509277344	2	465.256174	928.497795	0.44259	0.00020592	-0.3832	-0.00017829	0.059381	2.7628E-05	465.25576695537615	29.294	0.5732	29.072	28.89	29.463	-0.22195					12	10	2	0	0	0	0.1935	1	10661	10661		41.956	2.0059	1	6639800			27252	7479	17303	17395	26165	26165					0.03068596892092046
RESLASPVA	9	Unmodified	_RESLASPVA_					0	0	0		ENST00000373622.9_1_20:35807565-35812612:+|nuORF	ENST00000373622.9_1_20:35807565-35812612:+|nuORF	ENST00000373622.9_1_20:35807565-35812612:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	465.256174	928.497795	-0.045586	-2.1209E-05	0.47032	0.00021882	0.42473	0.00019761	465.25636770254476	29.5	0.208	29.151	29.033	29.241	-0.34921	-0.028005	0.00058285	NaN	41.956	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2930400			27253	7479	17303	17395							0.03068596892092046
RESNAEYLA	9	Unmodified	_RESNAEYLA_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MSMS	HCT116MG_D190212_S2	2	526.7537841796875	2	526.753995	1051.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.216	1	27.886	27.386	28.386	-0.32987								0	0	0	0.55145	1	10283	10283		26.268	3.5319	1				27254	2444	17304	17396	26166	26166					-0.030249123214844076
RESNAEYLA	9	Unmodified	_RESNAEYLA_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7536010742188	2	526.753995	1051.49344	0.34025	0.00017923	-0.26231	-0.00013817	0.077939	4.1055E-05	526.7536656510757	28.043	0.26045	27.855	27.725	27.985	-0.18847					7	4	2	0	0	0	0.21258	1	10138	10138		39.95	5.548	1	5816000			27255	2444	17304	17396	26167	26167					-0.030249123214844076
RESNNMVVP	9	Unmodified	_RESNNMVVP_					0	0	0		ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2	ENST00000589947.7_1_19:19459550-19465349:+|nuORF	ENST00000589947.7_1_19:19459550-19465349:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2586669921875	2	523.258391	1044.50223	0.43194	0.00022601	0.11119	5.818E-05	0.54312	0.00028419	523.2584592111009	32.043	0.62291	31.813	31.631	32.254	-0.23009					21	11	2	0	0	0	0.28073	1	11849	11849		32.786	3.7041	1	28449000			27256	9010	17305	17397	26168	26168					-0.01824261956630835
RESNNMVVP	9	Unmodified	_RESNNMVVP_					0	0	0		ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2	ENST00000589947.7_1_19:19459550-19465349:+|nuORF	ENST00000589947.7_1_19:19459550-19465349:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	523.2587280273438	2	523.258391	1044.50223	0.22828	0.00011945	0.13466	7.046E-05	0.36294	0.00018991	523.2585512705999	32.095	0.72853	31.816	31.682	32.41	-0.27841					28	13	3	0	0	0	0.21258	1	11758	11758		39.95	15.276	1	20311000			27257	9010	17305	17397	26169	26169					-0.01824261956630835
RESNNMVVP	9	Unmodified	_RESNNMVVP_					0	0	0		ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2	ENST00000589947.7_1_19:19459550-19465349:+|nuORF	ENST00000589947.7_1_19:19459550-19465349:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	523.258391	1044.50223	0.35579	0.00018617	0.37404	0.00019572	0.72983	0.00038189	523.7589967060925	31.89	0.31303	31.89	31.648	31.961	0	0.02265	0.0002666	NaN	39.95	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2829500			27258	9010	17305	17397							-0.01824261956630835
RESPFSTSA	9	Unmodified	_RESPFSTSA_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S1	1	491.2357482910156	2	491.235439	980.456324	0.62762	0.00030831	-0.2293	-0.00011264	0.39833	0.00019567	491.23528967458736	28.547	0.37145	28.547	28.375	28.746	0					12	6	2	0	0	0	0.082877	1	10401	10401		61.602	25.096	1	12222000			27259	1425	17306	17398	26170	26170					-0.034685838672317004
RESPFSTSA	9	Unmodified	_RESPFSTSA_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S2	2	491.2358703613281	2	491.235439	980.456324	0.25246	0.00012402	0.28776	0.00014136	0.54022	0.00026538	491.2354934905881	29.036	0.46044	28.72	28.555	29.015	-0.31613					13	8	2	0	0	0	0.016412	1	10611	10611		100.09	56.232	1	58668000			27260	1425	17306	17398	26171	26171					-0.034685838672317004
RESPFSTSA	9	Unmodified	_RESPFSTSA_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S2	2	981.4638061523438	1	981.463601	980.456324	0.70023	0.00068725	0.8312	0.00081579	1.5314	0.001503	981.4644881625874	29.081	0.35869	28.765	28.504	28.863	-0.31613					9	6	2	0	0	0	0.0067688	1	10659	10659		122.18	58.219	1	15432000			27261	1425	17306	17398	26172	26172					-0.034685838672317004
RESPFSTSA	9	Unmodified	_RESPFSTSA_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S3	3	491.2355651855469	2	491.235439	980.456324	0.25362	0.00012459	0.52091	0.00025589	0.77452	0.00038047	491.2356565767297	29.034	0.57264	28.812	28.525	29.098	-0.22195					19	10	2	0	0	0	0.030039	1	10535	10535		86.332	42.474	1	39256000			27262	1425	17306	17398	26173	26173					-0.034685838672317004
RESPFSTSA	9	Unmodified	_RESPFSTSA_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S3	3	981.4628295898438	1	981.463601	980.456324	0.88527	0.00086886	0.51765	0.00050805	1.4029	0.0013769	981.464446324124	29.018	0.46844	28.796	28.525	28.994	-0.22196					12	8	2	0	0	0	0.0080847	1	10549	10549		118.07	58.7	1	3951000			27263	1425	17306	17398	26174	26174					-0.034685838672317004
RESPPTRDV	9	Unmodified	_RESPPTRDV_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	HCT116MG_D190212_S2	2	528.7755126953125	2	528.775262	1055.53597	0.1042	5.51E-05	0.15815	8.3626E-05	0.26235	0.00013873	528.7753678905235	18.814	0.31215	18.451	18.269	18.581	-0.36325					12	5	3	0	0	0	0.19011	1	6511	6511		42.312	9.5268	1	17234000			27264	4444	17307	17399	26175	26175					0.0104248280676984
RESPPTRDV	9	Unmodified	_RESPPTRDV_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	HCT116MG_D190212_S3	3	528.775146484375	2	528.775262	1055.53597	0.12924	6.8338E-05	0.4401	0.00023271	0.56934	0.00030105	528.7756295442017	17.634	0.36431	17.716	17.534	17.898	0.081358					11	6	2	0	0	0	0.12465	1	5955	5955		53.317	11.477	1	5078000			27265	4444	17307	17399	26176	26176					0.0104248280676984
RESPPTRDV	9	Unmodified	_RESPPTRDV_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	528.775262	1055.53597	0.37544	0.00019853	-0.45302	-0.00023955	-0.077577	-4.1021E-05	528.7750622275618	18.125	0.20874	18.125	18.037	18.246	0	-0.16266	-0.0004894	NaN	42.312	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1900600			27266	4444	17307	17399							0.0104248280676984
RESQHIPTA	9	Unmodified	_RESQHIPTA_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7699584960938	2	519.76998	1037.52541	0.29563	0.00015366	0.017118	8.8977E-06	0.31275	0.00016256	519.7698513469414	21.007	0.4691	20.624	20.286	20.755	-0.38288					16	8	3	0	0	0	0.14362	1	7369	7369		49.554	7.5987	1	10241000			27267	6131	17308	17400	26177	26177					0.008145001523189421
RESQHIPTA	9	Unmodified	_RESQHIPTA_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	HCT116MG_D190212_S3	3	519.7705078125	2	519.76998	1037.52541	0.21321	0.00011082	-0.38536	-0.0002003	-0.17215	-8.9479E-05	519.7698932761873	20.063	0.41662	20.111	19.895	20.311	0.048107					13	7	2	0	0	0	0.39784	1	6920	6920		22.736	5.6234	1	2834900			27268	6131	17308	17400	26178	26178					0.008145001523189421
RESSVLLSP	9	Unmodified	_RESSVLLSP_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	494.2772521972656	2	494.277106	986.53966	0.30446	0.00015049	0.091165	4.5061E-05	0.39562	0.00019555	494.2770235235138	37.834	0.87408	37.834	37.249	38.123	0					29	16	3	0	0	0	0.12205	1	14098	14098		53.833	3.8998	1	12704000			27269	7500	17309	17401	26179	26179					0.045851525806369864
RESSVLLSP	9	Unmodified	_RESSVLLSP_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	494.277106	986.53966	0.054056	2.6719E-05	0.56577	0.00027965	0.61983	0.00030637	494.27732280418024	38.23	0.5276	37.847	37.568	38.095	-0.38282	0.054013	0.00025023	NaN	53.833	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3908100			27270	7500	17309	17401							0.045851525806369864
RETEPPPKA	9	Unmodified	_RETEPPPKA_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;ENST00000599165.5_1_19:48654500-48673536:-|nuORF	ENSG00000105486|ENST00000263274|LIG1	ENSG00000105486|ENST00000263274|LIG1	MSMS	HCT116MG_D190212_S1	1	512.7747802734375	2	512.774731	1023.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.482	1	15.482	14.982	15.982	0								0	0	0	0.62613	1	5146	5146		22.658	10.483	1				27271	2012	17310	17402	26180	26180					0.024082684378413433
RETEPPPKA	9	Unmodified	_RETEPPPKA_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;ENST00000599165.5_1_19:48654500-48673536:-|nuORF	ENSG00000105486|ENST00000263274|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7742919921875	2	512.774731	1023.53491	0.13421	6.8819E-05	0.11744	6.022E-05	0.25165	0.00012904	512.7747737170982	15.528	1.3042	15.201	14.706	16.011	-0.32684					39	24	2	0	0	0	0.022505	2	5155	5139;5155		93.938	44.411	1	11211000			27272	2012	17310	17402	26181;26182	26182					0.024082684378413433
RETESNWEA	9	Unmodified	_RETESNWEA_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	HCT116MG_D190212_S3	3	561.74951171875	2	561.246535	1120.47852	0.46408	0.00026046	0.45818	0.00025715	0.92226	0.00051761	561.2465678322521	27.335	0.26024	27.166	27.016	27.276	-0.16933					7	4	2	0	0	0	0.14362	1	9873	9873		49.554	18.918	1	4344400			27273	5180	17311	17403	26183	26183					-0.07690404189474975
RETESNWEA	9	Unmodified	_RETESNWEA_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MSMS	HCT116MG_D190212_S4	4	561.2467651367188	2	561.246535	1120.47852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.626	1	27.304	26.804	27.804	-0.32157								0	0	0	0.52331	1	9898	9898		27.629	4.8925	1				27274	5180	17311	17403	26184	26184					-0.07690404189474975
RETETVFVP	9	Unmodified	_RETETVFVP_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-MSMS	HCT116MG_D190212_S1	1	539.281982421875	2	539.282389	1076.55022	0.77607	0.00041852	-0.36615	-0.00019746	0.40992	0.00022106	539.2819336823313	41.717	0.3643	41.717	41.55	41.914	0					13	6	3	0	0	0	0.090581	1	15723	15723		60.074	14.053	1	18307000			27275	5446	17312	17404	26185	26185					0.01501135235048423
RETETVFVP	9	Unmodified	_RETETVFVP_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-MSMS	HCT116MG_D190212_S2	2	539.2828979492188	2	539.282389	1076.55022	0.61106	0.00032953	-0.2438	-0.00013148	0.36726	0.00019806	539.282206332884	41.726	0.41353	41.658	41.447	41.861	-0.068199					13	7	2	0	0	0	0.023778	1	15768	15768		92.653	46.632	1	92180000			27276	5446	17312	17404	26186	26186					0.01501135235048423
RETETVFVP	9	Unmodified	_RETETVFVP_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-MSMS	HCT116MG_D190212_S2	2	1077.558349609375	1	1077.5575	1076.55022	0.59108	0.00063692	0.14613	0.00015746	0.73721	0.00079438	1077.5576309587357	41.713	0.2075	41.645	41.549	41.756	-0.068199					5	3	2	0	0	0	0.01405	1	15799	15799		103.35	59.495	1	10463000			27277	5446	17312	17404	26187	26187					0.01501135235048423
RETETVFVP	9	Unmodified	_RETETVFVP_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-MSMS	HCT116MG_D190212_S3	3	539.282470703125	2	539.282389	1076.55022	0.42101	0.00022704	0.099509	5.3663E-05	0.52052	0.00028071	539.2823075375313	41.99	0.61254	41.687	41.48	42.093	-0.30257					18	11	3	0	0	0	0.11023	1	15624	15624		56.177	18.203	1	17337000			27278	5446	17312	17404	26188	26188					0.01501135235048423
RETETVFVP	9	Unmodified	_RETETVFVP_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MSMS	HCT116MG_D190212_S4	4	539.2818603515625	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.081	1	41.705	41.205	42.205	-0.37571								0	0	0	0.30238	1	15453	15453		39.95	14.55	1				27279	5446	17312	17404	26189	26189					0.01501135235048423
RETGSIAAP	9	Unmodified	_RETGSIAAP_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-MSMS	HCT116MG_D190212_S1	1	451.24053955078125	2	451.240524	900.466495	0.070296	3.172E-05	-0.043825	-1.9776E-05	0.026471	1.1945E-05	451.24046338726305	24.909	0.26194	24.909	24.778	25.04	0					8	4	2	0	0	0	0.19461	1	8963	8963		41.84	1.8823	1	6571500			27280	889	17313	17405	26190	26190					0.012280238579933211
RETGSIAAP	9	Unmodified	_RETGSIAAP_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-MSMS	HCT116MG_D190212_S2	2	451.2404479980469	2	451.240524	900.466495	0.10513	4.7441E-05	0.15974	7.208E-05	0.26487	0.00011952	451.2405006516495	25.409	0.57225	25.038	24.872	25.445	-0.37098					17	10	2	0	0	0	0.023938	1	9156	9156		92.491	14.342	1	36410000			27281	889	17313	17405	26191	26191					0.012280238579933211
RETGSIAAP	9	Unmodified	_RETGSIAAP_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-MSMS	HCT116MG_D190212_S2	2	901.474609375	1	901.473771	900.466495	0.91275	0.00082282	0.48853	0.00044039	1.4013	0.0012632	901.4736925578371	25.373	0.26061	24.998	24.868	25.129	-0.37521					6	4	2	0	0	0	0.0067688	1	9161	9161		122.18	47.25	1	19223000			27282	889	17313	17405	26192	26192					0.012280238579933211
RETGSIAAP	9	Unmodified	_RETGSIAAP_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-MSMS	HCT116MG_D190212_S3	3	451.2405090332031	2	451.240524	900.466495	0.20486	9.2441E-05	-0.1005	-4.5351E-05	0.10436	4.7091E-05	451.2404472886166	25.023	0.67694	24.917	24.735	25.412	-0.10618					22	12	2	0	0	0	0.011082	1	8904	8904		110.67	51.996	1	24477000			27283	889	17313	17405	26193	26193					0.012280238579933211
RETGSIAAP	9	Unmodified	_RETGSIAAP_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-MSMS	HCT116MG_D190212_S3	3	901.4735717773438	1	901.473771	900.466495	0.91792	0.00082748	-0.40749	-0.00036734	0.51043	0.00046014	901.4732509032824	24.971	0.20844	24.865	24.787	24.995	-0.10618					6	3	2	0	0	0	0.0067688	1	8925	8925		122.18	64.708	1	4075300			27284	889	17313	17405	26194	26194					0.012280238579933211
RETGSIAAP	9	Unmodified	_RETGSIAAP_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-MSMS	HCT116MG_D190212_S4	4	451.2402038574219	2	451.240524	900.466495	0.48142	0.00021724	-0.5486	-0.00024755	-0.067182	-3.0315E-05	451.2402852332066	25.251	0.26003	24.971	24.798	25.058	-0.27958					9	4	3	0	0	0	0.14171	1	8952	8952		49.933	11.959	1	5726100			27285	889	17313	17405	26195	26195					0.012280238579933211
RETGSIAAP	9	Unmodified	_RETGSIAAP_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-MATCH	HCT116MG_D190212_S4	4		1	901.473771	900.466495	0.8576	0.0007731	0.40106	0.00036154	1.2587	0.0011346	901.4739380461363	25.26	0.15597	24.98	24.85	25.006	-0.27958	0.032463	0.00038461	NaN	122.18	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2011900			27286	889	17313	17405							0.012280238579933211
RETGSIAAP	9	Unmodified	_RETGSIAAP_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	451.240524	900.466495	0.42818	0.00019321	0.098219	4.432E-05	0.5264	0.00023753	451.24051822028963	25.591	0.2601	25.308	25.158	25.418	-0.28361	0.26484	6.8151E-05	NaN	110.67	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1842300			27287	889	17313	17405							0.012280238579933211
REVLKLLLA	9	Unmodified	_REVLKLLLA_					0	0	0			REV__ENST00000447767.1_1_20:57098897-57099083:+|nuORF	REV__ENST00000447767.1_1_20:57098897-57099083:+|nuORF	MSMS	HCT116MG_D190212_S4	4	352.23846435546875	3	352.237615	1053.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0777	1	0.8131	0.3131	1.3131	-0.26456								0	0	0	0.77018	1	329	329		0.26902	0	1		+		27288	15690	17314	17406	26196	26196					0.16631758679159248
REWEFQKY	8	Unmodified	_REWEFQKY_					0	0	0		ENST00000467617.1_1_22:41363658-41368489:+|nuORF;ENSG00000100387|ENST00000216225|RBX1	ENST00000467617.1_1_22:41363658-41368489:+|nuORF	ENST00000467617.1_1_22:41363658-41368489:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	593.76806640625	2	593.288005	1184.56146	0.54852	0.00032543	0.66252	0.00039307	1.211	0.00071849	593.2885884590644	36.964	0.20752	36.964	36.835	37.042	0					5	3	2	0	0	0	0.20053	1	13805	13805		58.679	34.658	1	7569200			27289	1703	17315	17407	26197	26197					-0.023440426708020823
REWEFQKY	8	Unmodified	_REWEFQKY_					0	0	0		ENST00000467617.1_1_22:41363658-41368489:+|nuORF;ENSG00000100387|ENST00000216225|RBX1	ENST00000467617.1_1_22:41363658-41368489:+|nuORF	ENST00000467617.1_1_22:41363658-41368489:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	593.2883911132812	2	593.288005	1184.56146	0.60716	0.00036022	-0.33053	-0.0001961	0.27663	0.00016412	593.2880584038396	36.964	0.30934	36.849	36.653	36.963	-0.11478					11	5	3	0	0	0	0.19352	1	13852	13852		74.929	38.423	1	30775000			27290	1703	17315	17407	26198	26198					-0.023440426708020823
REWEFQKY	8	Unmodified	_REWEFQKY_					0	0	0		ENST00000467617.1_1_22:41363658-41368489:+|nuORF;ENSG00000100387|ENST00000216225|RBX1	ENST00000467617.1_1_22:41363658-41368489:+|nuORF	ENST00000467617.1_1_22:41363658-41368489:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	593.287841796875	2	593.288005	1184.56146	0.63744	0.00037819	-0.36536	-0.00021676	0.27208	0.00016142	593.7891904321897	37.148	0.20808	36.847	36.769	36.977	-0.30137					6	3	2	0	0	0	0.1893	1	13779	13779		75.761	51.74	1	9438600			27291	1703	17315	17407	26199	26199					-0.023440426708020823
REWIWFRWWSR	11	Unmodified	_REWIWFRWWSR_					0	0	0		KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant;KRT6B|p.G65Rfs*80|1|0.06|ENSG00000185479|chr12:52451861-52451886|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	854.7276000976562	2	854.436401	1706.85825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.604	1	46.492	45.992	46.992	-0.11121								0	0	0	0.96157	1	17756	17756		0.26902	0.26902	1				27292	9272	17316	17408	26200	26200					0.033094192765702246
REWYQETHEKQ	11	Unmodified	_REWYQETHEKQ_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MSMS	HCT116MG_D190212_S1	1	767.3564453125	2	767.357679	1532.7008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.665	1	21.665	21.165	22.165	0								0	0	0	0.94012	1	7633	7633		11.495	8.2134	1				27293	3151	17317	17409	26201	26201					-0.044237498440907075
REYEKRVSA	9	Unmodified	_REYEKRVSA_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;nc|ENSG00000077721|P49459-3|UBE2A;ENST00000499038.2_1_5:133721305-133726041:+|nuORF;ENST00000503080.1_1_5:133723966-133726041:+|nuORF;nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MSMS	HCT116MG_D190212_S1	1	380.1997985839844	3	379.871883	1136.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.657	1	15.657	15.157	16.157	0								0	0	0	0.31255	1	5217	5217		37.251	20.685	1				27294	2625	17318	17410	26202	26202					0.03098744732187697
REYEKRVSA	9	Unmodified	_REYEKRVSA_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;nc|ENSG00000077721|P49459-3|UBE2A;ENST00000499038.2_1_5:133721305-133726041:+|nuORF;ENST00000503080.1_1_5:133723966-133726041:+|nuORF;nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2200317382812	2	569.304187	1136.59382	0.31726	0.00018062	0.063578	3.6195E-05	0.38084	0.00021681	569.304084564066	15.998	0.20886	15.663	15.533	15.741	-0.33451					5	3	2	0	0	0	0.31258	1	5367	5367		29.437	12.324	1	10493000			27295	2625	17318	17410	26203	26203					0.03098744732187697
REYHKWRIYYK	11	Unmodified	_REYHKWRIYYK_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MSMS	HCT116MG_D190212_S1	1	821.4365844726562	2	821.436067	1640.85758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.37	1	54.37	53.87	54.87	0								0	0	0	0.96157	1	20847	20847		0.26902	0.26902	1				27296	873	17319	17411	26204	26204					0.06278579836885001
REYHKWRIYYK	11	Unmodified	_REYHKWRIYYK_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MSMS	HCT116MG_D190212_S3	3	821.4363403320312	2	821.436067	1640.85758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.089	1	57.819	57.319	58.319	-0.26932								0	0	0	0.96149	1	22089	22089		0.30703	0.30703	1				27297	873	17319	17411	26205	26205					0.06278579836885001
REYWNEQSA	9	Unmodified	_REYWNEQSA_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2;TRAM2|p.H317R|1|0.35|ENSG00000065308|chr6:52504680-52504680|T/C|missense_variant	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	HCT116MG_D190212_S1	1	591.761962890625	2	591.762352	1181.51015	0.64268	0.00038031	-0.50371	-0.00029808	0.13897	8.2237E-05	591.7620263197468	29.711	0.20756	29.711	29.581	29.789	0					6	3	2	0	0	0	0.22528	1	10872	10872		38.615	19.253	1	8222800			27298	1154	17320	17412	26206	26206					-0.0733441143552227
REYWNEQSA	9	Unmodified	_REYWNEQSA_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2;TRAM2|p.H317R|1|0.35|ENSG00000065308|chr6:52504680-52504680|T/C|missense_variant	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	HCT116MG_D190212_S2	2	592.2643432617188	2	591.762352	1181.51015	0.40335	0.00023869	-0.080532	-4.7656E-05	0.32282	0.00019103	591.7622371708874	29.962	0.25804	29.673	29.559	29.817	-0.2894					7	4	2	0	0	0	0.082877	1	11021	11021		61.602	25.096	1	25889000			27299	1154	17320	17412	26207	26207					-0.0733441143552227
REYWNEQSA	9	Unmodified	_REYWNEQSA_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2;TRAM2|p.H317R|1|0.35|ENSG00000065308|chr6:52504680-52504680|T/C|missense_variant	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	HCT116MG_D190212_S3	3	591.7626342773438	2	591.762352	1181.51015	0.66685	0.00039462	-0.15876	-9.3947E-05	0.5081	0.00030067	591.7621636966586	30.137	0.36716	29.887	29.702	30.069	-0.24946					9	6	2	0	0	0	0.051033	1	10974	10974		74.2	28.46	1	10327000			27300	1154	17320	17412	26208	26208					-0.0733441143552227
RFATGGCCH	9	Unmodified	_RFATGGCCH_					0	0	0			REV__ENST00000373874.6_1_20:35220934-35221084:+|nuORF	REV__ENST00000373874.6_1_20:35220934-35221084:+|nuORF	MSMS	HCT116MG_D190212_S4	4	476.1986083984375	2	476.199822	950.38509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.345	1	56.038	55.538	56.538	-0.30626								0	0	0	0.76973	1	21119	21119		1.8442	0.19162	1		+		27301	15196	17321	17413	26209	26209					-0.09208698377256042
RFCPPPPPP	9	Unmodified	_RFCPPPPPP_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MSMS	HCT116MG_D190212_S4	4	504.2618713378906	2	504.260205	1006.50586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.37	1	30.013	29.513	30.513	-0.3571								0	0	0	0.76669	1	11007	11007		12.532	0.29089	1				27302	6447	17322	17414	26210	26210					0.002864526078610652
RFDVIDLDP	9	Unmodified	_RFDVIDLDP_					0	0	0		ENST00000593157.5_1_19:13216299-13227549:-|nuORF;nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1;ENST00000588511.5_1_19:13223619-13226880:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	545.2830200195312	2	545.282389	1088.55022	0.65395	0.00035659	0.36248	0.00019765	1.0164	0.00055424	545.2824913083024	17.124	0.26073	17.124	16.942	17.202	0					6	4	2	0	0	0	0.61923	1	5836	5836		10.074	0.72649	1	3191100			27303	1968	17323	17415	26211	26211					0.009491352350551097
RFFNLFKQWKR	11	Unmodified	_RFFNLFKQWKR_					0	0	0			REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1	REV__tr|U7SEN1|U7SEN1_FUSNULipopolysaccharidebiosynthesisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02360PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	523.7799072265625	3	523.964889	1568.87284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.099	1	54.911	54.411	55.411	-0.18797								0	0	0	0.9619	1	21230	21230		0.094841	0	1		+		27304	17658	17324	17416	26212	26212					0.11115491424720858
RFKEYLWRFLR	11	Unmodified	_RFKEYLWRFLR_					0	0	0			REV__ENSG00000167904|ENST00000434581|TMEM68	REV__ENSG00000167904|ENST00000434581|TMEM68	MSMS	HCT116MG_D190212_S1	1	807.4588012695312	2	807.456802	1612.89905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.319	1	51.319	50.819	51.819	0								0	0	0	0.96192	1	19604	19604		0	0	1		+		27305	13173	17325	17417	26213	26213					0.11711760596199383
RFKFWRKWRRT	11	Unmodified	_RFKFWRKWRRT_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	HCT116MG_D190212_S1	1	834.3611450195312	2	833.98131	1665.94807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.649	1	20.649	20.149	21.149	0								0	0	0	0.96208	1	7228	7228		0	0	1		+		27306	17192	17326	17418	26214	26214					0.14173093675799464
RFKILHKL	8	Unmodified	_RFKILHKL_					0	0	0			REV__nc|ENSG00000150627|Q8IZU2|WDR17	REV__nc|ENSG00000150627|Q8IZU2|WDR17	MSMS	HCT116MG_D190212_S1	1	352.2334899902344	3	352.234316	1053.68112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.703	1	17.703	17.203	18.203	0								0	0	0	0.8837	1	6041	6041		10.824	0	1		+		27307	17161	17327	17419	26215	26215					0.15642615464412302
RFKRIERYKQK	11	Unmodified	_RFKRIERYKQK_					0	0	0			REV__CDADC1|p.D387Y|1|0.3|ENSG00000102543|chr13:49278458-49278458|G/T|missense_variant	REV__CDADC1|p.D387Y|1|0.3|ENSG00000102543|chr13:49278458-49278458|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	517.97998046875	3	517.979198	1550.91576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.729	1	55.417	54.917	55.917	-0.312								0	0	0	0.96138	1	20875	20875		0.36667	0.27183	1		+		27308	10130	17328	17420	26216	26216					0.16234261482145484
RFKRRQLLRLQ	11	Unmodified	_RFKRRQLLRLQ_					0	0	0		nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;KDM2A|p.R834Vfs*3|1|0.38|ENSG00000173120|chr11:67250525-67250525|C/-|frameshift_variant;KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant	nc|ENSG00000173120|Q9Y2K7-4|KDM2A	nc|ENSG00000173120|Q9Y2K7-4|KDM2A	MSMS	HCT116MG_D190212_S1	1	757.6236572265625	2	757.481143	1512.94773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.364	1	17.364	16.864	17.864	0								0	0	0	0.95954	1	5905	5905		1.3295	0	1				27309	5273	17329	17421	26217	26217					0.21177673955980936
RFLEKRRRERQ	11	Unmodified	_RFLEKRRRERQ_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	HCT116MG_D190212_S2	2	525.3101806640625	3	525.309718	1572.90732	0.42486	0.00022318	0.0038874	2.0421E-06	0.42874	0.00022522	525.3095912696062	55.529	1.5372	55.343	54.205	55.742	-0.18565					93	29	6	0	0	0	0.74191	1	21330	21330		0.50596	0.09769	1	138880000	+		27310	11656	17330	17422	26218	26218					0.14378707565560944
RFLEKRRRERQ	11	Unmodified	_RFLEKRRRERQ_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	525.309718	1572.90732	0.51619	0.00027116	0.025843	1.3576E-05	0.54203	0.00028474	525.309336481046	55.586	0.57291	55.274	54.881	55.454	-0.312	-0.034644	2.9892E-05	NaN	0.50596	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6109500	+		27311	11656	17330	17422							0.14378707565560944
RFLLKQLLE	9	Unmodified	_RFLLKQLLE_					0	0	0			REV__ENST00000565075.5_1_15:66170224-66172086:+|nuORF	REV__ENST00000565075.5_1_15:66170224-66172086:+|nuORF	MSMS	HCT116MG_D190212_S4	4	580.3613891601562	2	580.363516	1158.71248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.6	1	60.334	59.834	60.834	-0.26582								0	0	0	0.76967	1	22838	22838		2.0598	0	1		+		27312	16529	17331	17423	26219	26219					0.13947143707832765
RFLMRKRLLFP	11	Unmodified	_RFLMRKRLLFP_					0	0	0		CLCN2|p.P381Lfs*35|1|0.16|ENSG00000114859|chr3:184355722-184355722|G/-|frameshift_variant;ENST00000485667.1_1_3:184073137-184079267:-|nuORF;CLCN2|p.P667Lfs*11|2|0.15|ENSG00000114859|chr3:184353278-184353278|G/-|frameshift_variant;CLCN2|p.E690Rfs*6|1|0.17|ENSG00000114859|chr3:184353108-184353108|C/-|frameshift_variant;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	CLCN2|p.P381Lfs*35|1|0.16|ENSG00000114859|chr3:184355722-184355722|G/-|frameshift_variant	CLCN2|p.P381Lfs*35|1|0.16|ENSG00000114859|chr3:184355722-184355722|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	492.9688415527344	3	492.970986	1475.89113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.575	1	55.263	54.763	55.763	-0.312								0	0	0	0.96111	1	20813	20813		0.50596	0.051438	1				27313	472	17332	17424	26220	26220					0.17221910075090818
RFLRFFTISIR	11	Unmodified	_RFLRFFTISIR_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F;REV__nc|ENSG00000157388|Q01668-4|CACNA1D;REV__nc|ENSG00000151067|Q13936-2|CACNA1C	REV__nc|ENSG00000151067|Q13936-2|CACNA1C	MSMS	HCT116MG_D190212_S4	4	728.4346313476562	2	728.432796	1454.85104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.166	1	57.877	57.377	58.377	-0.28879								0	0	0	0.94851	1	21853	21853		7.1017	1.3699	1		+		27314	10077;10078;11141	17333	17425	26221	26221					0.14180686676172627
RFNGKGKKIR	10	Unmodified	_RFNGKGKKIR_					0	0	0		DLX6|p.L238Sfs*55|2|0.14|ENSG00000006377|chr7:97009873-97009873|C/-|frameshift_variant;ENSG00000006377|ENST00000518156|DLX6;nc|ENSG00000006377|P56179|DLX6;ENST00000493273.2_1_7:96636558-96639356:+|nuORF;ENSG00000144355|ENST00000361725|DLX1;nc|ENSG00000006377|P56179-2|DLX6;ENST00000409492.1_1_2:172950333-172951818:+|nuORF	DLX6|p.L238Sfs*55|2|0.14|ENSG00000006377|chr7:97009873-97009873|C/-|frameshift_variant	DLX6|p.L238Sfs*55|2|0.14|ENSG00000006377|chr7:97009873-97009873|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	602.3746948242188	2	602.375281	1202.73601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.41	1	58.41	57.91	58.91	0								0	0	0	0.96377	1	22500	22500		1.6526	0.17072	1				27315	689	17334	17426	26222	26222					0.1427500226502616
RFPKKVLPP	9	Unmodified	_RFPKKVLPP_					0	0	0		ENST00000301332.2_1_8:145699090-145699315:+|nuORF	ENST00000301332.2_1_8:145699090-145699315:+|nuORF	ENST00000301332.2_1_8:145699090-145699315:+|nuORF	MSMS	HCT116MG_D190212_S4	4	361.23297119140625	3	361.234205	1080.68079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.285	1	30.915	30.415	31.415	-0.37026								0	0	0	0.76948	1	11348	11348		2.7352	1.5419	1				27316	7001	17335	17427	26223	26223					0.14367195744557648
RFPKKWVA	8	Unmodified	_RFPKKWVA_					0	0	0			REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7	REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7	MSMS	HCT116MG_D190212_S3	3	516.3097534179688	2	516.311087	1030.60762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.428	1	55.136	54.636	55.636	-0.2918								0	0	0	0.8837	1	21025	21025		2.5775	0.27475	1		+		27317	17272	17336	17428	26224	26224					0.09354067021945411
RFQYQVWP	8	Unmodified	_RFQYQVWP_					0	0	0		UNC80|p.R1721Q|1|0.5|ENSG00000144406|chr2:209921516-209921516|G/A|missense_variant	UNC80|p.R1721Q|1|0.5|ENSG00000144406|chr2:209921516-209921516|G/A|missense_variant	UNC80|p.R1721Q|1|0.5|ENSG00000144406|chr2:209921516-209921516|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	561.7727661132812	2	562.287808	1122.56106	0.36486	0.00020515	2.415	0.0013579	2.7798	0.0015631	562.2890336785222	18.367	0.26041	18.367	18.246	18.506	0					7	4	2	0	0	0	0.30262	1	6322	6322		13.508	13.508	1	920130			27318	18681	17337	17429	26225	26225					0.004685823999807326
RFRLLVHHLC	10	Unmodified	_RFRLLVHHLC_					0	0	0		nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;CACNA1G|p.E2317Rfs*47|1|0.22|ENSG00000006283|chr17:50626559-50626559|C/-|frameshift_variant;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;CACNA1G|p.P2298Afs*13|1|0.4|ENSG00000006283|chr17:50626502-50626503|-/G|frameshift_variant;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	MSMS	HCT116MG_D190212_S1	1	432.0855712890625	3	431.916881	1292.72881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.674	1	11.674	11.174	12.174	0								0	0	0	0.97116	1	3695	3695		0	0	1				27319	9361	17338	17430	26226	26226					0.09415946392959995
RFVPGAAK	8	Unmodified	_RFVPGAAK_					0	0	0			REV__ENST00000464148.2_1_1:228296563-228296986:-|nuORF	REV__ENST00000464148.2_1_1:228296563-228296986:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	423.2533264160156	2	423.253237	844.491922	0.14146	5.9873E-05	-0.15708	-6.6486E-05	-0.015624	-6.6128E-06	423.25316323251934	31.183	0.72875	31.183	30.607	31.336	0					20	13	2	0	0	0	0.55794	1	11376	11376		36.044	0	1	7596200	+		27320	15805	17339	17431	26227	26227					0.06345543171084955
RFWKLILLTWL	11	Unmodified	_RFWKLILLTWL_					0	0	0		ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	496.9747619628906	3	496.974502	1487.90168	0.36793	0.00018285	0.42097	0.00020921	0.78891	0.00039207	496.9745623940931	56.352	0.30899	56.352	56.171	56.48	0					15	5	5	0	0	0	0.74191	1	21666	21666		0.50596	0.41111	1	125310000			27321	8101	17340	17432	26228	26228					0.17724216001192872
RFWKLILLTWL	11	Unmodified	_RFWKLILLTWL_					0	0	0		ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MSMS	HCT116MG_D190212_S1	1	744.958984375	2	744.958115	1487.90168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.415	1	56.415	55.915	56.915	0								0	0	0	0.96192	1	21687	21687		0.30703	0	1				27322	8101	17340	17432	26229	26229					0.17724216001192872
RFWKLILLTWL	11	Unmodified	_RFWKLILLTWL_					0	0	0		ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	496.9747619628906	3	496.974502	1487.90168	0.45153	0.0002244	0.23974	0.00011914	0.69127	0.00034354	496.97456728900517	56.847	0.73341	56.668	56.421	57.155	-0.17904					45	13	5	0	0	0	0.74191	1	21921	21921		0.50596	0.41111	1	70402000			27323	8101	17340	17432	26230	26230					0.17724216001192872
RFWKLILLTWL	11	Unmodified	_RFWKLILLTWL_					0	0	0		ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	496.974502	1487.90168	0.36793	0.00018285	0.42097	0.00020921	0.78891	0.00039207	496.9745623940931	56.352	0.30899	56.352	56.171	56.48	0	-0.15838	0.00020242	NaN	0.50596	15	5	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125310000			27324	8101	17340	17432							0.17724216001192872
RFWKLILLTWL	11	Unmodified	_RFWKLILLTWL_					0	0	0		ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	496.974502	1487.90168	0.45153	0.0002244	0.23974	0.00011914	0.69127	0.00034354	496.97456728900517	56.847	0.73341	56.668	56.421	57.155	-0.17904	0.15838	-6.7794E-05	NaN	0.50596	45	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70402000			27325	8101	17340	17432							0.17724216001192872
RFWWRRRKKIM	11	Unmodified	_RFWWRRRKKIM_					0	0	0			REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	MSMS	HCT116MG_D190212_S1	1	554.9945068359375	3	554.992784	1661.95652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.353	1	39.353	38.853	39.853	0								0	0	0	0.96121	1	14760	14760		0.45452	0.45452	1		+		27326	14544	17341	17433	26231	26231					0.1520232432078501
RFYHLTEP	8	Unmodified	_RFYHLTEP_					0	0	0			REV__ENSG00000080511|ENST00000591589|RDH8	REV__ENSG00000080511|ENST00000591589|RDH8	MULTI-MSMS	HCT116MG_D190212_S2	2	355.0697326660156	3	354.85042	1061.52943	-0.13554	-4.8095E-05	-0.7795	-0.0002766	-0.91503	-0.0003247	354.8501262542801	17.458	0.26132	17.108	16.978	17.239	-0.34933					9	4	3	0	0	0	0.85789	1	5904	5904		3.9444	0	1	9027200	+		27327	10863	17342	17434	26232	26232					0.0011258964605076471
RGAGLTHTP	9	Unmodified	_RGAGLTHTP_					0	0	0		ENST00000301073.3_1_19:56114194-56114308:+|nuORF	ENST00000301073.3_1_19:56114194-56114308:+|nuORF	ENST00000301073.3_1_19:56114194-56114308:+|nuORF	MSMS	HCT116MG_D190212_S1	1	455.24884033203125	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.142	1	62.142	61.642	62.642	0								0	0	0	0.76902	1	23990	23990		4.3292	1.7518	1				27328	6998	17343	17435	26233	26233					0.024911498147389466
RGALYIFL	8	Unmodified	_RGALYIFL_					0	0	0			REV__ENST00000492728.1_1_1:146714404-146731617:+|nuORF	REV__ENST00000492728.1_1_1:146714404-146731617:+|nuORF	MSMS	HCT116MG_D190212_S1	1	476.78643798828125	2	476.78437	951.554188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.478	1	35.478	34.978	35.978	0								0	0	0	0.8837	1	13198	13198		10.183	0.83596	1		+		27329	11971	17344	17436	26234	26234					0.07647269519407018
RGAPEGGQP	9	Unmodified	_RGAPEGGQP_					0	0	0		nc|ENSG00000164078|Q04912-3|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;MST1R|p.S761Pfs*11|1|0.43|ENSG00000164078|chr3:49896794-49896800|ACCAGGT/-|frameshift_variant;MST1R|p.G755Vfs*19|3|0.19|ENSG00000164078|chr3:49896810-49896810|C/-|frameshift_variant;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R	nc|ENSG00000164078|Q04912-3|MST1R	nc|ENSG00000164078|Q04912-3|MST1R	MSMS	HCT116MG_D190212_S2	2	434.71734619140625	2	434.717216	867.419879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.756	1	11.466	10.966	11.966	-0.28953								0	0	0	0.76849	1	3807	3807		6.2058	0	1				27330	4664	17345	17437	26235	26235					-0.019134159732743683
RGAPIVELWF	10	Unmodified	_RGAPIVELWF_					0	0	0			REV__ENST00000381246.6_1_15:44158489-44158573:+|nuORF	REV__ENST00000381246.6_1_15:44158489-44158573:+|nuORF	MSMS	HCT116MG_D190212_S4	4	594.3341064453125	2	594.332216	1186.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.096	1	34.71	34.21	35.21	-0.38606								0	0	0	0.95507	1	12841	12841		3.5965	0	1		+		27331	15278	17346	17438	26236	26236					0.06401997639659385
RGCACGGG	8	Unmodified	_RGCACGGG_					0	0	0			REV__ENST00000377452.3_1_20:18744192-18744426:+|nuORF	REV__ENST00000377452.3_1_20:18744192-18744426:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	680.2615356445312	1	680.26029	679.253013	0.81806	0.00055649	1.1193	0.0007614	1.9373	0.0013179	680.2608568403919	14.196	0.076127	14.196	14.148	14.225	0					6	4	2	0	0	0	0.88026	1	4639	4639		0	0	1	718020	+		27332	15238	17347	17439	26237	26237					-0.09944303394183862
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S2	2	758.2218627929688	1	758.220081	757.212805	0.85578	0.00064887	-0.76845	-0.00058265	0.087337	6.6221E-05	758.2215442592873	14.722	1.2842	14.402	14.002	15.286	-0.31952					52	24	3	0	0	0	0.88026	2	4819	4819;5143		0	0	1	1635800			27333	9667	17348	17440	26238;26239	26238					-0.1755130938063303
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S3	3	759.2224731445312	1	758.220081	757.212805	0.4521	0.00034279	-0.61579	-0.0004669	-0.16369	-0.00012411	758.2220761146899	16.545	1.561	16.63	15.665	17.226	0.085424					67	29	3	0	0	0	0.88026	4	5358	5358;5400;5512;5633		0	0	1	2052700			27334	9667	17348	17440	26240;26241;26242;26243	26240					-0.1755130938063303
RGCCGGCC	8	Unmodified	_RGCCGGCC_					0	0	0		nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284725|A0A286YF77|SCYGR6;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8;nc|ENSG00000284643|A0A286YFB4|SCYGR2	nc|ENSG00000284667|A0A286YF46|SCYGR5	nc|ENSG00000284667|A0A286YF46|SCYGR5	MULTI-MSMS	HCT116MG_D190212_S4	4	758.2222900390625	1	758.220081	757.212805	0.99765	0.00075644	-0.69827	-0.00052944	0.29938	0.000227	758.2215020786244	55.731	1.5218	55.419	54.881	56.403	-0.312					51	28	3	0	0	0	0.88026	2	20812	20812;21155		0	0	1	1580300			27335	9667	17348	17440	26244;26245	26244					-0.1755130938063303
RGDDEEWNE	9	Unmodified	_RGDDEEWNE_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	HCT116MG_D190212_S3	3	383.81976318359375	3	383.819625	1148.43705	-0.25789	-9.8985E-05	0.748	0.0002871	0.49011	0.00018811	383.8198628510118	17.895	0.20801	17.976	17.898	18.106	0.081358					5	3	2	0	0	0	0.71898	1	6069	6069		2.2828	0.5405	1	7758000			27336	3345	17349	17441	26246	26246					-0.13123584948789357
RGDDEEWNE	9	Unmodified	_RGDDEEWNE_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	383.819625	1148.43705	-0.14525	-5.5749E-05	0.9937	0.0003814	0.84845	0.00032565	383.81994760781356	18.376	0.20835	18.376	18.246	18.454	0	0.19989	0.00014138	NaN	2.2828	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2888000			27337	3345	17349	17441							-0.13123584948789357
RGDQPPPQ	8	Unmodified	_RGDQPPPQ_					0	0	0			REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF	REV__ENST00000571541.5_1_17:7297219-7297795:-|nuORF	MSMS	HCT116MG_D190212_S3	3	447.724853515625	2	447.725041	893.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.213	1	15.296	14.796	15.796	0.083271								0	0	0	0.8837	1	4960	4960		13.042	0.80181	1		+		27338	16576	17350	17442	26247	26247					-0.015451294562353723
RGDSVIVVL	9	Unmodified	_RGDSVIVVL_					0	0	0		nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	MSMS	HCT116MG_D190212_S3	3	479.2899169921875	2	479.290017	956.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.787	1	49.472	48.972	49.972	-0.31525								0	0	0	0.2496	1	18758	18758		43.772	7.6454	1				27339	2904	17351	17443	26248	26248					0.08546046822914377
RGDSYLRP	8	Unmodified	_RGDSYLRP_					0	0	0			REV__ENST00000468509.1_1_1:206137294-206137480:+|nuORF	REV__ENST00000468509.1_1_1:206137294-206137480:+|nuORF	MSMS	HCT116MG_D190212_S2	2	482.25323486328125	2	482.253966	962.493378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.728	1	31.48	30.98	31.98	-0.24883								0	0	0	0.62663	1	11715	11715		36.044	12.896	1		+		27340	15846	17352	17444	26249	26249					0.010631324691871669
RGEHADPYT	9	Unmodified	_RGEHADPYT_					0	0	0			REV__DICER1|p.S1344L|1|0.33|ENSG00000100697|chr14:95103365-95103365|G/A|missense_variant	REV__DICER1|p.S1344L|1|0.33|ENSG00000100697|chr14:95103365-95103365|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	523.2376098632812	2	523.238513	1044.46247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.489	1	16.323	15.823	16.823	-0.16624								0	0	0	0.76759	1	5401	5401		9.3831	0.035688	1		+		27341	10364	17353	17445	26250	26250					-0.057980656357358384
RGEPPGEPGAG	11	Unmodified	_RGEPPGEPGAG_					0	0	0		ENST00000375050.5_1_6:32157573-32157942:-|nuORF	ENST00000375050.5_1_6:32157573-32157942:-|nuORF	ENST00000375050.5_1_6:32157573-32157942:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2471313476562	2	512.246338	1022.47812	0.10586	5.4226E-05	0.20477	0.00010489	0.31063	0.00015912	512.2463833300347	16.275	1.561	16.361	15.612	17.174	0.085424					65	29	3	0	0	0	0.63759	1	5715	5715		31.268	1.0435	1	15283000			27342	7503	17354	17446	26251	26251					-0.03221779118655377
RGEQGPPGPAG	11	Unmodified	_RGEQGPPGPAG_					0	0	0		CON__P04258	CON__P04258	CON__P04258	MULTI-MSMS	HCT116MG_D190212_S3	3	511.7557373046875	2	511.75433	1021.49411	0.0061981	3.1719E-06	0.89642	0.00045875	0.90262	0.00046192	511.7545168244223	17.016	0.52036	17.1	16.808	17.329	0.084467					15	9	2	0	0	0	0.57532	1	5657	5657		38.176	10.547	1	1503600		+	27343	557	17355	17447	26252	26252					-0.015780728817617273
RGERPALA	8	Unmodified	_RGERPALA_					0	0	0			REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	435.7529296875	2	435.251226	868.487899	0.20906	9.0993E-05	-0.27852	-0.00012123	-0.06946	-3.0233E-05	435.25099803760594	43.889	1.1017	43.515	43.018	44.12	-0.37408					42	22	3	0	0	0	0.87576	1	16174	16174		0.79363	0	1	7199000	+		27344	16283	17356	17448	26253	26253					0.04839453677357142
RGGGGGGD	8	Unmodified	_RGGGGGGD_					0	0	0		sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;sp|F5HDQ6|DNBI_HCMVMMajorDNA-bindingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=DBPPE=3SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	632.2747802734375	1	632.274678	631.267401	0.71022	0.00044905	-0.65146	-0.0004119	0.058763	3.7154E-05	632.2744164502657	34.154	0.88614	34.154	33.763	34.649	0					34	16	4	0	0	0	0.88026	1	12615	12615		0	0	1	148490000			27345	18197	17357	17449	26254	26254					-0.06298191650057561
RGGGGGGF	8	Unmodified	_RGGGGGGF_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1;KRT2|p.E409Gfs*10|1|0.31|ENSG00000172867|chr12:52647752-52647753|-/C|frameshift_variant;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908;nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-SECPEP	HCT116MG_D190212_S2	2	663.617919921875	1	664.316148	663.308872	0.36199	0.00024047	-0.85062	-0.00056508	-0.48864	-0.00032461	664.3154736183905	35.351	0.40285	35.208	34.932	35.335	-0.14245					13	7	2	0	0	0	0.33627	1	13194	13194		0	0	1	24110000		+	27346	2210	17358	17450	26255	26255					-0.03625010890721114
RGGGLCGH	8	Unmodified	_RGGGLCGH_					0	0	0		ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	756.324951171875	1	756.356967	755.349691	0.71154	0.00053818	-0.58139	-0.00043974	0.13015	9.8437E-05	756.3568274051552	41.012	0.26051	40.71	40.527	40.788	-0.30185					6	4	2	0	0	0	0.86388	1	15255	15255		2.8892	0	1	2123300			27347	9019	17359	17451	26256	26256					-0.037769928427451305
RGGPILTF	8	Unmodified	_RGGPILTF_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;KALRN|p.D854Tfs*33|1|0.3|ENSG00000160145|chr3:124422830-124422830|A/-|frameshift_variant;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;KALRN|p.T114Rfs*55|1|0.17|ENSG00000160145|chr3:124264577-124264577|A/-|frameshift_variant;nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;nc|ENSG00000160145|O60229-2|KALRN	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	430.753173828125	2	430.75307	859.491587	0.12942	5.5749E-05	-0.10547	-4.5432E-05	0.023952	1.0317E-05	430.7529645764132	49.302	0.2629	48.986	48.816	49.079	-0.31596					9	4	3	0	0	0	0.3916	1	18574	18574		50.855	12.704	1	5966400			27348	994;4433	17360	17452	26257	26257					0.05622123451223615
RGGPILTF	8	Unmodified	_RGGPILTF_					0	0	0		TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;TRIO|p.V2351Cfs*62|3|0.3|ENSG00000038382|chr5:14487672-14487672|C/-|frameshift_variant;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;KALRN|p.D854Tfs*33|1|0.3|ENSG00000160145|chr3:124422830-124422830|A/-|frameshift_variant;TRIO|p.E1028Rfs*29|1|0.41|ENSG00000038382|chr5:14369389-14369389|G/-|frameshift_variant;KALRN|p.T114Rfs*55|1|0.17|ENSG00000160145|chr3:124264577-124264577|A/-|frameshift_variant;nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant;nc|ENSG00000160145|O60229-2|KALRN	TRIO|p.K1219Nfs*43|2|0.16|ENSG00000038382|chr5:14387518-14387518|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	430.75307	859.491587	0.029783	1.2829E-05	0.02686	1.157E-05	0.056643	2.4399E-05	430.75299169063004	49.001	0.2523	48.847	48.733	48.985	-0.15405	-0.06955	7.1462E-05	NaN	50.855	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20748000			27349	994;4433	17360	17452							0.05622123451223615
RGGRGKPP	8	Unmodified	_RGGRGKPP_					0	0	0			REV__nc|ENSG00000167615|Q96PV6-1|LENG8	REV__nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-SECPEP	HCT116MG_D190212_S3	3	412.05767822265625	2	412.746111	823.477669	0.18418	7.6018E-05	-0.10514	-4.3394E-05	0.079041	3.2624E-05	412.7460134940135	44.986	0.75151	44.676	44.451	45.202	-0.30927					19	14	2	0	0	0	0.33364	1	16929	16929		0.79363	0	1	4938400	+		27350	13156	17361	17453	26258	26258					0.058868907427950035
RGGRGKPP	8	Unmodified	_RGGRGKPP_					0	0	0			REV__nc|ENSG00000167615|Q96PV6-1|LENG8	REV__nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	412.746111	823.477669	-0.18063	-7.4555E-05	0.18353	7.5751E-05	0.0028978	1.1961E-06	412.74609757633823	44.223	0.53191	44.223	44.036	44.568	0	-0.31698	0.00018869	NaN	0.79363	21	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93015000	+		27351	13156	17361	17453							0.058868907427950035
RGGRGKPP	8	Unmodified	_RGGRGKPP_					0	0	0			REV__nc|ENSG00000167615|Q96PV6-1|LENG8	REV__nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	412.746111	823.477669	0.14186	5.8551E-05	0.14187	5.8558E-05	0.28373	0.00011711	412.7460577275249	44.646	0.62736	44.561	44.376	45.004	-0.084797	0.02134	0.00015431	NaN	0.79363	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32887000	+		27352	13156	17361	17453							0.058868907427950035
RGGRGKPP	8	Unmodified	_RGGRGKPP_					0	0	0			REV__nc|ENSG00000167615|Q96PV6-1|LENG8	REV__nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	412.746111	823.477669	0.1678	6.926E-05	-0.14986	-6.1855E-05	0.017942	7.4053E-06	412.74599208860826	45.072	0.64879	44.7	44.494	45.143	-0.37285	0.15947	-8.6516E-05	NaN	0.79363	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10423000	+		27353	13156	17361	17453							0.058868907427950035
RGGSISVQVNS	11	Unmodified	_RGGSISVQVNS_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	HCT116MG_D190212_S1	1	552.2941284179688	2	552.293819	1102.57309	0.46745	0.00025817	0.004873	2.6913E-06	0.47232	0.00026086	552.2938223728435	27.047	0.26002	27.047	26.918	27.178	0					7	4	2	0	0	0	0.69168	1	9829	9829		24.882	1.0918	1	5396400			27354	4827	17362	17454	26259	26259					0.025901543525151283
RGGSKRVI	8	Unmodified	_RGGSKRVI_					0	0	0			REV__ENSG00000105672|ENST00000402764|ETV2	REV__ENSG00000105672|ENST00000402764|ETV2	MULTI-MSMS	HCT116MG_D190212_S3	3	436.7751159667969	2	436.774868	871.535184	0.29254	0.00012777	-0.069243	-3.0243E-05	0.22329	9.7529E-05	436.77477123820495	49.071	0.42242	48.755	48.552	48.975	-0.31596					12	7	2	0	0	0	0.81097	1	18472	18472		10.183	0	1	3337000	+		27355	11264	17363	17455	26260	26260					0.09427732948381617
RGGSKRVI	8	Unmodified	_RGGSKRVI_					0	0	0			REV__ENSG00000105672|ENST00000402764|ETV2	REV__ENSG00000105672|ENST00000402764|ETV2	MULTI-SECPEP	HCT116MG_D190212_S3	3	437.56072998046875	2	436.774868	871.535184	0.29254	0.00012777	-0.069243	-3.0243E-05	0.22329	9.7529E-05	436.77477123820495	49.071	0.42242	48.755	48.552	48.975	-0.31596					12	7	2	0	0	0	0.3238	1	18468	18468		10.183	0	1	3337000	+		27356	11264	17363	17455	26261	26261					0.09427732948381617
RGGSLAKV	8	Unmodified	_RGGSLAKV_					0	0	0		ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	MSMS	HCT116MG_D190212_S4	4	394.2433166503906	2	394.24287	786.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.532	1	44.159	43.659	44.659	-0.37326								0	0	0	0.8837	1	16409	16409		2.5775	0	1				27357	897	17364	17456	26262	26262					0.0694095279142175
RGHRPLAT	8	Unmodified	_RGHRPLAT_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MSMS	HCT116MG_D190212_S4	4	454.2644348144531	2	454.264668	906.514782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.884	1	59.612	59.112	60.112	-0.27156								0	0	0	0.8837	1	22547	22547		0.69038	0	1		+		27358	13743	17365	17457	26263	26263					0.05778562288548983
RGKGRGPA	8	Unmodified	_RGKGRGPA_					0	0	0			REV__ENST00000574268.1_1_17:4710512-4711565:+|nuORF	REV__ENST00000574268.1_1_17:4710512-4711565:+|nuORF	MSMS	HCT116MG_D190212_S1	1	399.73828125	2	399.738286	797.462019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.972	1	39.972	39.472	40.472	0								0	0	0	0.8837	1	15010	15010		2.3027	0	1		+		27359	16589	17366	17458	26264	26264					0.05518604225744639
RGKGRGPA	8	Unmodified	_RGKGRGPA_					0	0	0			REV__ENST00000574268.1_1_17:4710512-4711565:+|nuORF	REV__ENST00000574268.1_1_17:4710512-4711565:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	399.7381286621094	2	399.738286	797.462019	0.12669	5.0644E-05	-0.12099	-4.8365E-05	0.0057029	2.2797E-06	399.73818524230666	41.034	1.3056	40.657	39.59	40.896	-0.37732					45	29	2	0	0	0	0.8672	1	14806	14806		2.3027	0	1	7253100	+		27360	16589	17366	17458	26265	26265					0.05518604225744639
RGKKRRPQIL	10	Unmodified	_RGKKRRPQIL_					0	0	0			REV__nc|ENSG00000176358|Q86UU9-3|TAC4	REV__nc|ENSG00000176358|Q86UU9-3|TAC4	MSMS	HCT116MG_D190212_S3	3	626.4113159179688	2	626.409655	1250.80476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.469	1	61.23	60.73	61.73	-0.2387								0	0	0	0.96521	1	23461	23461		1.3295	0.36726	1		+		27361	17224	17367	17459	26266	26266					0.18938666564736195
RGKLKIHR	8	Unmodified	_RGKLKIHR_					0	0	0		ENST00000553853.1_1_14:35297835-35331506:-|nuORF	ENST00000553853.1_1_14:35297835-35331506:-|nuORF	ENST00000553853.1_1_14:35297835-35331506:-|nuORF	MSMS	HCT116MG_D190212_S2	2	504.3323669433594	2	504.332885	1006.65122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.724	1	61.581	61.081	62.081	-0.14227								0	0	0	0.8837	1	23912	23912		0	0	1				27362	8772	17368	17460	26267	26267					0.14815676519060617
RGKNMFPR	8	Unmodified	_RGKNMFPR_					0	0	0			REV__ENST00000281172.9_1_12:15822752-15835827:-|nuORF	REV__ENST00000281172.9_1_12:15822752-15835827:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	502.7728271484375	2	503.274178	1004.5338	0.43489	0.00021887	0.026008	1.3089E-05	0.4609	0.00023196	503.27434917768414	16.624	0.31229	16.282	16.1	16.412	-0.34183					9	5	2	0	0	0	0.31855	1	5593	5593		8.5933	0	1	4032300	+		27363	14716	17369	17461	26268	26268					0.03171775587964021
RGKSAGGPQ	9	Unmodified	_RGKSAGGPQ_					0	0	0			REV__ENST00000369617.8_1_1:113933414-114092146:+|nuORF	REV__ENST00000369617.8_1_1:113933414-114092146:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	2	429.233033	856.451513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.149	1	25.859	25.359	26.359	-0.29022								0	0	0	0.67173	1	9301	9301		20.454	5.8719	1		+		27364	15146	17370	17462	26269	26269					0.017545767806609547
RGKWRKTKK	9	Unmodified	_RGKWRKTKK_					0	0	0			REV__ENST00000565782.1_1_16:18938215-18938455:+|nuORF	REV__ENST00000565782.1_1_16:18938215-18938455:+|nuORF	MSMS	HCT116MG_D190212_S2	2	594.3764038085938	2	594.377823	1186.74109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.278	1	60.123	59.623	60.623	-0.15441								0	0	0	0.77012	1	23326	23326		0.45834	0.057624	1		+		27365	16536	17371	17463	26270	26270					0.1551930612763499
RGLLLRRLRRR	11	Unmodified	_RGLLLRRLRRR_					0	0	0		nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENST00000419007.5_1_3:50313561-50314134:+|nuORF	nc|ENSG00000012171|Q13214-2|SEMA3B	nc|ENSG00000012171|Q13214-2|SEMA3B	MSMS	HCT116MG_D190212_S1	1	732.9940185546875	2	732.994752	1463.97495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.325	1	36.325	35.825	36.825	0								0	0	0	0.96208	1	13538	13538		0	0	1				27366	904	17372	17464	26271	26271					0.2615220228697126
RGLLSHDKK	9	Unmodified	_RGLLSHDKK_					0	0	0			REV__IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	REV__IRF2BPL|p.L713Sfs*54|1|0.54|ENSG00000119669|chr14:77025656-77025656|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	527.3090209960938	2	527.311815	1052.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.572	1	31.323	30.823	31.823	-0.24883								0	0	0	0.67254	1	11652	11652		20.415	1.1575	1		+		27367	11662	17373	17465	26272	26272					0.08487656320016868
RGPAGPQGPR	10	Unmodified	_RGPAGPQGPR_					0	0	0		COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant;ENSG00000108821|ENST00000225964|COL1A1	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	COL1A1|p.G1181Afs*58|1|0.37|ENSG00000108821|chr17:50186914-50186914|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	496.773193359375	2	496.772857	991.531161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.972	1	15.638	15.138	16.138	-0.33451								0	0	0	0.047226	1	5344	5344		106.94	7.1849	1				27368	513	17374	17466	26273	26273					0.03505643454661822
RGPCRCPGPS	10	Unmodified	_RGPCRCPGPS_					0	0	0		ENST00000498417.5_1_22:38228707-38229954:-|nuORF	ENST00000498417.5_1_22:38228707-38229954:-|nuORF	ENST00000498417.5_1_22:38228707-38229954:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	515.239013671875	2	515.239478	1028.4644	0.093602	4.8228E-05	0.84037	0.00043299	0.93397	0.00048122	515.2399235939764	18.115	1.0368	17.94	17.272	18.309	-0.17501					37	19	3	0	0	0	0.78781	1	5934	5934		13.042	1.4022	1	3475400			27369	8410	17375	17467	26274	26274					-0.04869051423111159
RGPEPGEPGQ	10	Unmodified	_RGPEPGEPGQ_					0	0	0		NHLH1|p.R55Q|1|0.17|ENSG00000171786|chr1:160370895-160370895|G/A|missense_variant	NHLH1|p.R55Q|1|0.17|ENSG00000171786|chr1:160370895-160370895|G/A|missense_variant	NHLH1|p.R55Q|1|0.17|ENSG00000171786|chr1:160370895-160370895|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	512.2462158203125	2	512.246338	1022.47812	0.10586	5.4226E-05	0.20477	0.00010489	0.31063	0.00015912	512.2463833300347	16.275	1.561	16.361	15.612	17.174	0.085424					65	29	3	0	0	0	0.49415	1	5568	5568		35.612	1.3905	1	15283000			27370	9694	17376	17468	26275	26275					-0.03221779118655377
RGPGPGRK	8	Unmodified	_RGPGPGRK_					0	0	0			REV__ENST00000534317.1_1_11:14665864-14793584:+|nuORF	REV__ENST00000534317.1_1_11:14665864-14793584:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	825.314697265625	1	824.484945	823.477669	0.91764	0.00075658	0.14763	0.00012172	1.0653	0.0008783	824.4848919477374	47.034	1.2357	46.72	46.125	47.361	-0.31405					58	24	4	0	0	0	0.86564	1	17501	17501		2.5775	0	1	131500000	+		27371	12627	17377	17469	26276	26276					0.05886890742806372
RGPGPGRK	8	Unmodified	_RGPGPGRK_					0	0	0			REV__ENST00000534317.1_1_11:14665864-14793584:+|nuORF	REV__ENST00000534317.1_1_11:14665864-14793584:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	824.484945	823.477669	0.96398	0.00079479	0.042649	3.5163E-05	1.0066	0.00082995	824.4848037094023	46.985	1.7767	46.615	46	47.777	-0.37038	-0.05251	-5.0594E-05	NaN	2.5775	91	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226140000	+		27372	12627	17377	17469							0.05886890742806372
RGPLLHSHRH	10	Unmodified	_RGPLLHSHRH_					0	0	0		ENST00000514463.1_1_3:126157220-126159113:-|nuORF	ENST00000514463.1_1_3:126157220-126159113:-|nuORF	ENST00000514463.1_1_3:126157220-126159113:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	605.3399047851562	2	605.33923	1208.66391	0.68384	0.00041396	1.3336	0.00080727	2.0174	0.0012212	605.3395328607362	46.132	0.30904	46.031	45.863	46.172	-0.1014					12	5	3	0	0	0	0.76143	1	17603	17603		15.248	0.8431	1	13612000			27373	8521	17378	17470	26277	26277					0.0679208791129895
RGPSSGPPPPP	11	Unmodified	_RGPSSGPPPPP_					0	0	0		ENST00000573331.5_1_17:7297739-7306647:-|nuORF	ENST00000573331.5_1_17:7297739-7306647:-|nuORF	ENST00000573331.5_1_17:7297739-7306647:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2759399414062	2	523.274898	1044.53524	0.31346	0.00016403	0.17317	9.0618E-05	0.48664	0.00025464	523.7765157423366	20.296	0.68475	19.917	19.657	20.342	-0.37949					22	12	2	0	0	0	0.3003	1	7050	7050		63.961	4.5921	1	7896500			27374	8907	17379	17471	26278	26278					0.014756881576886371
RGPSSGPPPPP	11	Unmodified	_RGPSSGPPPPP_					0	0	0		ENST00000573331.5_1_17:7297739-7306647:-|nuORF	ENST00000573331.5_1_17:7297739-7306647:-|nuORF	ENST00000573331.5_1_17:7297739-7306647:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	523.27490234375	2	523.274898	1044.53524	0.30729	0.0001608	0.31183	0.00016318	0.61913	0.00032398	523.2750174362186	19.56	0.93757	19.62	19.386	20.323	0.05983					28	17	2	0	0	0	0.36968	1	6719	6719		57.722	2.2192	1	5700300			27375	8907	17379	17471	26279	26279					0.014756881576886371
RGPSSGPPPPP	11	Unmodified	_RGPSSGPPPPP_					0	0	0		ENST00000573331.5_1_17:7297739-7306647:-|nuORF	ENST00000573331.5_1_17:7297739-7306647:-|nuORF	ENST00000573331.5_1_17:7297739-7306647:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	523.274898	1044.53524	0.30729	0.0001608	0.31183	0.00016318	0.61913	0.00032398	523.2750174362186	19.56	0.93757	19.62	19.386	20.323	0.05983	-0.13576	0.00014741	NaN	63.961	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5700300			27376	8907	17379	17471							0.014756881576886371
RGPWGQRGP	9	Unmodified	_RGPWGQRGP_					0	0	0			REV__ENST00000316292.13_1_6:74229958-74230393:-|nuORF	REV__ENST00000316292.13_1_6:74229958-74230393:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	504.9937438964844	2	505.767575	1009.5206	0.44502	0.00022508	-1.2573	-0.00063592	-0.81232	-0.00041085	505.7668662150967	18.098	0.26068	18.098	17.933	18.193	0					6	4	2	0	0	0	0.25723	1	6220	6220		7.9102	6.2575	1	1202500	+		27377	14862	17380	17472	26280	26280					0.01621660800230984
RGQGGYPGKP	10	Unmodified	_RGQGGYPGKP_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;ENST00000477529.1_1_7:100485861-100486167:+|nuORF	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MSMS	HCT116MG_D190212_S4	4	508.7660217285156	2	508.76724	1015.51993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.142	1	31.767	31.267	32.267	-0.37529								0	0	0	0.84701	1	11695	11695		22.736	0.98964	1				27378	1478	17381	17473	26281	26281					0.012788213605062992
RGQLAGQSP	9	Unmodified	_RGQLAGQSP_					0	0	0			REV__ENST00000419712.7_1_17:27043073-27045143:-|nuORF	REV__ENST00000419712.7_1_17:27043073-27045143:-|nuORF	MSMS	HCT116MG_D190212_S2	2	457.2449035644531	2	457.246141	912.477728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.393	1	26.031	25.531	26.531	-0.36164								0	0	0	0.74436	1	9547	9547		16.942	1.0951	1		+		27379	14787	17382	17474	26282	26282					0.017988459521461664
RGQSEVPSGP	10	Unmodified	_RGQSEVPSGP_					0	0	0		ENST00000481461.1_1_7:100861011-100861119:-|nuORF	ENST00000481461.1_1_7:100861011-100861119:-|nuORF	ENST00000481461.1_1_7:100861011-100861119:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	507.25372314453125	2	507.254163	1012.49377	0.19919	0.00010104	0.11252	5.7076E-05	0.31171	0.00015811	507.25418957794506	23.108	1.4984	23.068	22.523	24.021	-0.03968					42	28	3	0	0	0	0.65652	1	8067	8067		24.021	3.5669	1	9703600			27380	8249	17383	17475	26283	26283					-0.011974926016137033
RGRAPLPSV	9	Unmodified	_RGRAPLPSV_					0	0	0		ENST00000573525.1_1_16:2962029-2979726:+|nuORF;ENST00000253928.13_1_16:2962029-2979661:+|nuORF;ENST00000571140.5_1_16:2962029-2972349:+|nuORF	ENST00000573525.1_1_16:2962029-2979726:+|nuORF	ENST00000573525.1_1_16:2962029-2979726:+|nuORF	MSMS	HCT116MG_D190212_S3	3	476.7868347167969	2	476.787976	951.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.656	1	35.357	34.857	35.857	-0.29922								0	0	0	0.76834	1	13150	13150		6.7232	0.96273	1				27381	8908	17384	17476	26284	26284					0.08368002119846096
RGRFSQIISI	10	Unmodified	_RGRFSQIISI_					0	0	0			REV__ENST00000578942.5_1_18:211328-211490:+|nuORF	REV__ENST00000578942.5_1_18:211328-211490:+|nuORF	MSMS	HCT116MG_D190212_S1	1	588.8470458984375	2	588.846022	1175.67749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.09	1	42.09	41.59	42.59	0								0	0	0	0.93202	1	15866	15866		8.7454	0	1		+		27382	16616	17385	17477	26285	26285					0.09667900899921733
RGRILIQLK	9	Unmodified	_RGRILIQLK_					0	0	0		ENST00000465952.5_1_13:31192116-31195964:+|nuORF	ENST00000465952.5_1_13:31192116-31195964:+|nuORF	ENST00000465952.5_1_13:31192116-31195964:+|nuORF	MSMS	HCT116MG_D190212_S1	1	366.2486877441406	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.428	1	59.428	58.928	59.928	0								0	0	0	0.77019	1	22903	22903		0.23584	0	1				27383	8100	17386	17478	26286	26286					0.18001385521824886
RGRKWPWRRKW	11	Unmodified	_RGRKWPWRRKW_					0	0	0		nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	MSMS	HCT116MG_D190212_S2	2	806.4663696289062	2	806.465827	1610.9171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.136	1	56.957	56.457	57.457	-0.17904								0	0	0	0.95954	1	22056	22056		1.3295	1.3295	1				27384	9470	17387	17479	26287	26287					0.13607940361544024
RGRLLPSK	8	Unmodified	_RGRLLPSK_					0	0	0		ENST00000379089.5_1_9:34400006-34400129:-|nuORF	ENST00000379089.5_1_9:34400006-34400129:-|nuORF	ENST00000379089.5_1_9:34400006-34400129:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	463.0802917480469	2	463.798343	925.582134	0.072971	3.3844E-05	0.78299	0.00036315	0.85596	0.00039699	463.798594996658	58.562	0.25364	58.562	58.413	58.666	0					8	4	2	0	0	0	0.33249	1	22548	22548		1.8442	0	1	8575900			27385	7550	17388	17480	26288	26288					0.1163659249950797
RGRQLAAP	8	Unmodified	_RGRQLAAP_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	HCT116MG_D190212_S4	4	434.7593078613281	2	434.759218	867.503883	0.33024	0.00014357	-0.23561	-0.00010244	0.094622	4.1138E-05	434.75904333981697	46.28	0.6999	45.908	45.783	46.483	-0.37206					37	26	2	0	0	0	0.87576	1	17060	17060		0.79363	0	1	7823900			27386	3773	17389	17481	26289	26289					0.0648315991426216
RGRQLAAP	8	Unmodified	_RGRQLAAP_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	HCT116MG_D190212_S4	4	434.7591552734375	2	434.759218	867.503883	0.12424	5.4014E-05	-0.26313	-0.0001144	-0.13889	-6.0386E-05	434.7590087870678	50.103	0.97868	49.745	49.437	50.416	-0.35878					24	20	2	0	0	0	0.87576	1	18640	18640		0.79363	0	1	6195300			27387	3773	17389	17481	26290	26290					0.0648315991426216
RGRRKRPRRR	10	Unmodified	_RGRRKRPRRR_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	464.6337585449219	3	465.303121	1392.88753	0.23499	0.00010934	-1.1507	-0.0005354	-0.91567	-0.00042606	465.3027130293606	55.684	0.15393	55.684	55.606	55.76	0					4	2	2	0	0	0	0.31198	1	21396	21396		0.69767	0.24315	1	26713000	+		27388	16744	17390	17482	26291	26291					0.2068042113608044
RGRSLAKPW	9	Unmodified	_RGRSLAKPW_					0	0	0			REV__LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	REV__LARS2|p.M583Wfs*51|2|0.31|ENSG00000011376|chr3:45500561-45500561|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	358.2069396972656	3	357.545442	1069.6145	0.11795	4.2171E-05	-0.74757	-0.00026729	-0.62962	-0.00022512	357.54518770053187	26.101	0.20829	25.74	25.61	25.818	-0.36164					5	3	2	0	0	0	0.26676	1	9427	9427		0.23584	0.23584	1	6894800	+		27389	16971	17391	17483	26292	26292					0.08247379902491048
RGTERSPG	8	Unmodified	_RGTERSPG_					0	0	0			REV__nc|ENSG00000051009|Q8N612-2|FHIP1B	REV__nc|ENSG00000051009|Q8N612-2|FHIP1B	MULTI-SECPEP	HCT116MG_D190212_S4	4	430.23529052734375	2	430.222665	858.430778	0.037889	1.63E-05	1.4258	0.0006134	1.4637	0.0006297	430.2231600274729	23.337	0.26127	23.09	22.958	23.22	-0.24775					5	4	2	0	0	0	0.31507	1	8213	8213		2.3027	0	1	859120	+		27390	17070	17392	17484	26293	26293					-0.004100135989915543
RGVFALRT	8	Unmodified	_RGVFALRT_					0	0	0			REV__sp|P16760|VP22_HCMVAProteinUL24OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL24PE=3SV=3	REV__sp|P16760|VP22_HCMVAProteinUL24OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL24PE=3SV=3	MSMS	HCT116MG_D190212_S2	2	460.2756652832031	2	460.277244	918.539935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.538	1	40.468	39.968	40.968	-0.069626								0	0	0	0.8837	1	15290	15290		8.5933	1.8701	1		+		27391	17548	17393	17485	26294	26294					0.07740617091121749
RGVLKYYNK	9	Unmodified	_RGVLKYYNK_					0	0	0		nc|ENSG00000139865|Q86TZ1-2|TTC6;ENSG00000139865|ENST00000553443|TTC6	nc|ENSG00000139865|Q86TZ1-2|TTC6	nc|ENSG00000139865|Q86TZ1-2|TTC6	MSMS	HCT116MG_D190212_S2	2	380.8908386230469	3	380.888986	1139.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.335	1	64.219	63.719	64.719	-0.11585								0	0	0	0.7701	1	24902	24902		0.23584	0.095952	1				27392	3648	17394	17486	26295	26295					0.0808911349686241
RHCRNHLTRR	10	Unmodified	_RHCRNHLTRR_					0	0	0			REV__ENSG00000005981|ENST00000325885|ASB4	REV__ENSG00000005981|ENST00000325885|ASB4	MSMS	HCT116MG_D190212_S1	1	450.24566650390625	3	450.246172	1347.71669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.105	1	11.105	10.605	11.605	0								0	0	0	0.97116	1	3466	3466		0	0	1		+		27393	10483	17395	17487	26296	26296					0.05673722702431405
RHEIVPKDIRE	11	Unmodified	_RHEIVPKDIRE_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000557290.1_1_14:58737043-58738610:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-SECPEP	HCT116MG_D190212_S1	1	696.3917846679688	2	696.391325	1390.7681	0.89679	0.00062451	-0.62472	-0.00043505	0.27206	0.00018946	696.8922816630926	30.728	0.26011	30.728	30.555	30.815	0					8	4	3	0	0	0	0.36044	1	11297	11297		16.566	4.3252	1	6584100			27394	1718	17396	17488	26297	26297					0.08834325157522471
RHERHKHRHRH	11	Unmodified	_RHERHKHRHRH_					0	0	0			REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	528.5635986328125	3	529.289651	1584.84712	0.32005	0.0001694	-0.10445	-5.5283E-05	0.2156	0.00011412	529.2896879390292	21.724	0.67772	21.724	21.385	22.063	0					43	12	6	0	0	0	0.36631	1	7559	7559		0	0	1	774810000	+		27395	9992	17397	17489	26298	26298					0.07809454745665789
RHERHKHRHRH	11	Unmodified	_RHERHKHRHRH_					0	0	0			REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	529.289651	1584.84712	0.49336	0.00026113	-0.055276	-2.9257E-05	0.43808	0.00023187	529.2896058711557	22.199	0.52	21.814	21.531	22.051	-0.38519	0.045029	3.6009E-05	NaN	0	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144590000	+		27396	9992	17397	17489							0.07809454745665789
RHGFLRLGP	9	Unmodified	_RHGFLRLGP_					0	0	0			REV__DGKZ|p.K449Qfs*17|1|0.38|ENSG00000149091|chr11:46371724-46371725|-/C|frameshift_variant	REV__DGKZ|p.K449Qfs*17|1|0.38|ENSG00000149091|chr11:46371724-46371725|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	351.5414123535156	3	351.54192	1051.60393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.666	1	31.295	30.795	31.795	-0.37026								0	0	0	0.7689	1	11502	11502		2.7352	0	1		+		27397	10357	17398	17490	26299	26299					0.08019397248085625
RHHIILSKH	9	Unmodified	_RHHIILSKH_					0	0	0			REV__ZNF282|p.R530H|1|0.36|ENSG00000170265|chr7:149224220-149224220|G/A|missense_variant	REV__ZNF282|p.R530H|1|0.36|ENSG00000170265|chr7:149224220-149224220|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	380.8963623046875	3	380.896475	1139.66759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.408	1	10.408	9.9078	10.908	0								0	0	0	0.77025	1	3192	3192		0	0	1		+		27398	18077	17399	17491	26300	26300					0.10334757685200202
RHIPLKKLIAL	11	Unmodified	_RHIPLKKLIAL_					0	0	0			REV__ENSG00000176571|ENST00000518476|CNBD1	REV__ENSG00000176571|ENST00000518476|CNBD1	MSMS	HCT116MG_D190212_S1	1	651.7467041015625	2	651.442632	1300.87071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.438	1	42.438	41.938	42.938	0								0	0	0	0.96149	1	16006	16006		0.30703	0	1		+		27399	13546	17400	17492	26301	26301					0.2323106268695483
RHIQIEALEKS	11	Unmodified	_RHIQIEALEKS_					0	0	0		ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant	ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	662.3709716796875	2	662.372601	1322.73065	0.82424	0.00054595	-1.3098	-0.00086759	-0.48559	-0.00032164	662.3713930519398	53.066	0.82164	53.066	52.485	53.307	0					19	15	2	0	0	0	0.74191	1	20328	20328		4.1895	0.24511	1	11215000			27400	44	17401	17493	26302	26302					0.08219233891873046
RHKGASTT	8	Unmodified	_RHKGASTT_					0	0	0			REV__ENST00000215057.6_1_19:59084858-59084921:-|nuORF	REV__ENST00000215057.6_1_19:59084858-59084921:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	429.23309326171875	2	429.233033	856.451513	0.20232	8.6843E-05	-0.058042	-2.4913E-05	0.14428	6.193E-05	429.2329087023052	34.325	0.77626	34.15	33.864	34.641	-0.17512					20	14	2	0	0	0	0.86564	1	12750	12750		2.5775	0.27475	1	115110000	+		27401	14502	17402	17494	26303	26303					0.017545767806609547
RHKRRVMV	8	Unmodified	_RHKRRVMV_					0	0	0			REV__nc|ENSG00000134253|Q9H8W5-2|TRIM45	REV__nc|ENSG00000134253|Q9H8W5-2|TRIM45	MSMS	HCT116MG_D190212_S2	2	361.2233581542969	3	361.222305	1080.64509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.32	1	34.145	33.645	34.645	-0.17512								0	0	0	0.8837	1	12765	12765		1.6526	0.17072	1		+		27402	12049	17403	17495	26304	26304					0.10798835015907571
RHLLALFLRLR	11	Unmodified	_RHLLALFLRLR_					0	0	0		ENST00000581489.1_1_17:80250576-80250666:-|nuORF	ENST00000581489.1_1_17:80250576-80250666:-|nuORF	ENST00000581489.1_1_17:80250576-80250666:-|nuORF	MSMS	HCT116MG_D190212_S1	1	704.4586181640625	2	704.456605	1406.89866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.377	1	59.377	58.877	59.877	0								0	0	0	0.96157	1	22884	22884		0.26902	0.26902	1				27403	8958	17404	17496	26305	26305					0.21148385666992908
RHLQPHDAP	9	Unmodified	_RHLQPHDAP_					0	0	0		ENSG00000106571|ENST00000395925|GLI3;GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	MULTI-MSMS	HCT116MG_D190212_S3	3	535.77783203125	2	535.778139	1069.54173	0.47671	0.00025541	-0.92669	-0.0004965	-0.44997	-0.00024109	535.7775456116342	39.308	0.31955	39.007	38.82	39.14	-0.30137					10	5	3	0	0	0	0.60612	1	14615	14615		10.824	2.2306	1	6509000			27404	2085	17405	17497	26306	26306					0.009736261090665721
RHLRMSVKRER	11	Unmodified	_RHLRMSVKRER_					0	0	0			REV__nc|ENSG00000141551|P48730-2|CSNK1D	REV__nc|ENSG00000141551|P48730-2|CSNK1D	MULTI-MSMS	HCT116MG_D190212_S3	3	490.2869567871094	3	489.952766	1466.83647	-0.083577	-4.0949E-05	-0.064203	-3.1457E-05	-0.14778	-7.2405E-05	489.95278054450137	47.649	0.92218	47.333	47.166	48.089	-0.31525					30	17	2	0	0	0	0.73261	1	17901	17901		9.7643	0.52048	1	83195000	+		27405	12337	17406	17498	26307	26307					0.1217229125634276
RHLTLTSIMK	10	Unmodified	_RHLTLTSIMK_					0	0	0		ENSG00000154814|ENST00000285083|OXNAD1	ENSG00000154814|ENST00000285083|OXNAD1	ENSG00000154814|ENST00000285083|OXNAD1	MSMS	HCT116MG_D190212_S4	4	600.350830078125	2	600.350083	1198.68561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.113	1	53.784	53.284	54.284	-0.32923								0	0	0	0.95648	1	20224	20224		3.2813	0	1				27406	4230	17407	17499	26308	26308					0.09421711824984413
RHNGTGGG	8	Unmodified	_RHNGTGGG_					0	0	0			REV__ENSG00000159592|ENST00000355105|GPBP1L1	REV__ENSG00000159592|ENST00000355105|GPBP1L1	MSMS	HCT116MG_D190212_S2	2	378.1794738769531	2	378.180801	754.347048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.792	1	10.518	10.018	11.018	-0.27365								0	0	0	0.8837	1	3437	3437		2.0598	1.2661	1		+		27407	12808	17408	17500	26309	26309					-0.039951249760406427
RHPLGRWEVK	10	Unmodified	_RHPLGRWEVK_					0	0	0		PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant;nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1	PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant	PLA2R1|p.H662Tfs*26|1|0.13|ENSG00000153246|chr2:159987210-159987210|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	639.2766723632812	2	639.364913	1276.71527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.467	1	36.081	35.581	36.581	-0.38558								0	0	0	0.92607	1	13346	13346		10.074	0.6908	1				27408	4186	17409	17501	26310	26310					0.08798411885368296
RHQHGPPAP	9	Unmodified	_RHQHGPPAP_					0	0	0		ENST00000450295.5_3_9:91994021-91994087:-|nuORF	ENST00000450295.5_3_9:91994021-91994087:-|nuORF	ENST00000450295.5_3_9:91994021-91994087:-|nuORF	MSMS	HCT116MG_D190212_S4	4	498.7591857910156	2	498.759749	995.504946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.877	1	36.492	35.992	36.992	-0.38486								0	0	0	0.76611	1	13512	13512		14.582	1.0738	1				27409	7980	17410	17502	26311	26311					0.007013742831759373
RHQLIKVI	8	Unmodified	_RHQLIKVI_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-MSMS	HCT116MG_D190212_S2	2	503.829833984375	2	503.829643	1005.64473	0.52621	0.00026512	0.097955	4.9352E-05	0.62416	0.00031447	503.8294307386089	60.62	1.2423	60.471	60.115	61.358	-0.14852					49	23	3	0	0	0	0.87635	1	23399	23399		0.69038	0	1	38766000	+		27410	13442	17411	17503	26312	26312					0.14213738567718792
RHQLLGQIF	9	Unmodified	_RHQLLGQIF_					0	0	0			REV__ENST00000574212.1_1_16:15826501-15826636:+|nuORF	REV__ENST00000574212.1_1_16:15826501-15826636:+|nuORF	MSMS	HCT116MG_D190212_S1	1	371.2174987792969	3	371.217214	1110.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.849	1	33.849	33.349	34.349	0								0	0	0	0.76991	1	12540	12540		1.1933	0	1		+		27411	16588	17412	17504	26313	26313					0.0789224669970281
RHRAKRQQK	9	Unmodified	_RHRAKRQQK_					0	0	0			REV__BSN|p.P3790Hfs*5|1|0.5|ENSG00000164061|chr3:49663523-49663523|C/-|frameshift_variant;REV__PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant	REV__PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	403.2467041015625	3	403.246278	1206.717	0.2391	9.6417E-05	0.89573	0.0003612	1.1348	0.00045762	403.2465756391316	55.606	0.36441	55.294	55.142	55.506	-0.312					10	6	2	0	0	0	0.76909	1	20857	20857		0.96228	0.80295	1	2525100	+		27412	13885;10057	17413	17505	26314	26314					0.12191465693967984
RHRASEHGGV	10	Unmodified	_RHRASEHGGV_					0	0	0		ENST00000515011.5_1_5:58334863-58335067:-|nuORF	ENST00000515011.5_1_5:58334863-58335067:-|nuORF	ENST00000515011.5_1_5:58334863-58335067:-|nuORF	MSMS	HCT116MG_D190212_S4	4	369.1905517578125	3	369.191839	1104.55369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.296	1	53.972	53.472	54.472	-0.32349								0	0	0	0.96291	1	20297	20297		2.086	1.3883	1				27413	8528	17414	17506	26315	26315					0.005592428522959381
RHRHHHHHHHP	11	Unmodified	_RHRHHHHHHHP_					0	0	0		nc|ENSG00000206538|A8MV65-2|VGLL3;ENSG00000206538|ENST00000398399|VGLL3	nc|ENSG00000206538|A8MV65-2|VGLL3	nc|ENSG00000206538|A8MV65-2|VGLL3	MSMS	HCT116MG_D190212_S4	4	762.876708984375	2	762.875699	1523.73685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.85	1	61.595	61.095	62.095	-0.25457								0	0	0	0.96141	1	23344	23344		0.35063	0	1				27414	6397	17415	17507	26316	26316					-0.004073455226944134
RHRLNHKHHHR	11	Unmodified	_RHRLNHKHHHR_					0	0	0			REV__ENSG00000163545|ENST00000367157|NUAK2	REV__ENSG00000163545|ENST00000367157|NUAK2	MSMS	HCT116MG_D190212_S2	2	764.4224243164062	2	764.422482	1526.83041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.973	1	58.808	58.308	59.308	-0.1653								0	0	0	0.96208	1	22803	22803		0	0	1		+		27415	12931	17416	17508	26317	26317					0.08806953859721034
RHRRLHLPQ	9	Unmodified	_RHRRLHLPQ_					0	0	0		TRIM41|p.R534H|1|0.32|ENSG00000146063|chr5:181234483-181234483|G/A|missense_variant	TRIM41|p.R534H|1|0.32|ENSG00000146063|chr5:181234483-181234483|G/A|missense_variant	TRIM41|p.R534H|1|0.32|ENSG00000146063|chr5:181234483-181234483|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	606.86181640625	2	606.862872	1211.71119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.861	1	38.861	38.361	39.361	0								0	0	0	0.76902	1	14562	14562		4.3292	0.73274	1				27416	18662	17417	17509	26318	26318					0.11380367182323425
RHRRTNRRLKL	11	Unmodified	_RHRRTNRRLKL_					0	0	0			REV__ENST00000264245.8_2_3:119013288-119013453:+|nuORF	REV__ENST00000264245.8_2_3:119013288-119013453:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	502.6502990722656	3	502.650186	1504.92873	0.38516	0.0001936	-0.011016	-5.5371E-06	0.37415	0.00018806	502.65011627274674	56.352	0.30899	56.352	56.171	56.48	0					16	5	5	0	0	0	0.74191	1	21664	21664		0.08335	0.08335	1	206900000	+		27417	14663	17418	17510	26319	26319					0.19646137384916074
RHRRTNRRLKL	11	Unmodified	_RHRRTNRRLKL_					0	0	0			REV__ENST00000264245.8_2_3:119013288-119013453:+|nuORF	REV__ENST00000264245.8_2_3:119013288-119013453:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	502.9846496582031	3	502.650186	1504.92873	0.53243	0.00026763	-0.050892	-2.5581E-05	0.48154	0.00024205	502.65011504281097	56.84	0.62978	56.661	56.421	57.051	-0.17904					21	11	2	0	0	0	0.74191	1	21922	21922		0.08335	0	1	140120000	+		27418	14663	17418	17510	26320	26320					0.19646137384916074
RHRTKMRRKKR	11	Unmodified	_RHRTKMRRKKR_					0	0	0		nc|ENSG00000271447|Q9H239-2|MMP28;ENSG00000271447|ENST00000605424|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	MSMS	HCT116MG_D190212_S1	1	776.9788208007812	2	776.981318	1551.94808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.01	1	62.01	61.51	62.51	0								0	0	0	0.96149	1	23937	23937		0.30703	0.30703	1				27419	6664	17419	17511	26321	26321					0.19418770404149654
RHSHVCLINDQ	11	Unmodified	_RHSHVCLINDQ_					0	0	0			REV__ENSG00000185972|ENST00000335119|CCIN	REV__ENSG00000185972|ENST00000335119|CCIN	MSMS	HCT116MG_D190212_S2	2	661.3226318359375	2	661.325128	1320.6357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7853	1	9.5205	9.0205	10.021	-0.26472								0	0	0	0.9598	1	3069	3069		1.1933	0.59184	1		+		27420	13868	17420	17512	26322	26322					-0.011790228509198641
RHVARNLLRLL	11	Unmodified	_RHVARNLLRLL_					0	0	0		ENST00000464528.5_1_17:1630890-1639119:+|nuORF;WDR81|p.F1429Sfs*15|1|0.43|ENSG00000167716|chr17:1732449-1732449|T/-|frameshift_variant;WDR81|p.H1752Tfs*33|1|0.25|ENSG00000167716|chr17:1735641-1735641|C/-|frameshift_variant;nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000492901.1_1_17:1619854-1633810:+|nuORF;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81	ENST00000464528.5_1_17:1630890-1639119:+|nuORF	ENST00000464528.5_1_17:1630890-1639119:+|nuORF	MSMS	HCT116MG_D190212_S3	3	454.29248046875	3	454.293117	1359.85752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.921	1	59.662	59.162	60.162	-0.25832								0	0	0	0.96192	1	22831	22831		0.08335	0.08335	1				27421	4950	17421	17513	26323	26323					0.19198624627551908
RHVKQSMR	8	Unmodified	_RHVKQSMR_					0	0	0			REV__HSPB9|p.S94C|1|0.09|ENSG00000260325|chr17:42123130-42123130|A/T|missense_variant	REV__HSPB9|p.S94C|1|0.09|ENSG00000260325|chr17:42123130-42123130|A/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	521.29150390625	2	521.290359	1040.56617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.026	1	54.734	54.234	55.234	-0.2918								0	0	0	0.8837	1	20864	20864		2.5775	0	1		+		27422	14415	17422	17514	26324	26324					0.047505629909665004
RHVLVNSIWPL	11	Unmodified	_RHVLVNSIWPL_					0	0	0		ENST00000463724.1_1_1:74648194-74648635:-|nuORF;nc|ENSG00000162620|A6PVS8-3|LRRIQ3;LRRIQ3|p.I209Nfs*2|1|0.48|ENSG00000162620|chr1:74155814-74155815|-/T|frameshift_variant;nc|ENSG00000162620|A6PVS8-2|LRRIQ3;LRRIQ3|p.P379Lfs*26|1|0.32|ENSG00000162620|chr1:74041797-74041797|A/-|frameshift_variant;LRRIQ3|p.F408Lfs*8|1|0.32|ENSG00000162620|chr1:74041707-74041707|A/-|frameshift_variant;LRRIQ3|p.L517Yfs*11|1|0.03|ENSG00000162620|chr1:74041381-74041382|-/AAAGCAGAAAAAT|frameshift_variant;ENSG00000162620|ENST00000354431|LRRIQ3	ENST00000463724.1_1_1:74648194-74648635:-|nuORF	ENST00000463724.1_1_1:74648194-74648635:-|nuORF	MSMS	HCT116MG_D190212_S3	3	667.6943359375	2	667.390596	1332.76664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.142	1	40.84	40.34	41.34	-0.30185								0	0	0	0.95581	1	15296	15296		3.2813	0.28607	1				27423	8075	17423	17515	26325	26325					0.11356735859408218
RHWKRYIYLWI	11	Unmodified	_RHWKRYIYLWI_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S1	1	545.26318359375	3	545.308655	1632.90414	0.51828	0.00028262	0.83794	0.00045694	1.3562	0.00073956	545.3090878460906	22.402	0.20882	22.402	22.272	22.481	0					6	3	2	0	0	0	0.74191	2	7940	7940;7957		1.3296	1.3296	1	6345300			27424	1778	17424	17516	26326;26327	26326					0.11300064458828274
RHWKRYIYLWI	11	Unmodified	_RHWKRYIYLWI_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	HCT116MG_D190212_S1	1	409.2337646484375	4	409.233311	1632.90414	-0.04573	-1.8714E-05	0.58736	0.00024037	0.54163	0.00022165	409.23366304316494	22.402	0.20882	22.402	22.272	22.481	0					5	3	2	0	0	0	0.74191	1	7956	7956		1.3296	1.3296	1	6546300			27425	1778	17424	17516	26328	26328					0.11300064458828274
RHWRRWTK	8	Unmodified	_RHWRRWTK_					0	0	0			REV__ENST00000566624.5_1_15:66794944-66797161:-|nuORF	REV__ENST00000566624.5_1_15:66794944-66797161:-|nuORF	MSMS	HCT116MG_D190212_S1	1	613.3451538085938	2	613.344315	1224.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.95	1	59.95	59.45	60.45	0								0	0	0	0.8837	1	23103	23103		0.69038	0.088878	1		+		27426	13484	17425	17517	26329	26329					0.0707269563652062
RHYWDRHAR	9	Unmodified	_RHYWDRHAR_					0	0	0			REV__nc|ENSG00000110536|Q8WUK0-2|PTPMT1	REV__nc|ENSG00000110536|Q8WUK0-2|PTPMT1	MSMS	HCT116MG_D190212_S1	1	432.8847961425781	3	432.88675	1295.63842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.002	1	13.002	12.502	13.502	0								0	0	0	0.77019	1	4202	4202		0.23584	0.076522	1		+		27427	11402	17426	17518	26330	26330					0.002426133888775439
RHYYYHRQYRR	11	Unmodified	_RHYYYHRQYRR_					0	0	0		NDUFB10|p.Y55H|1|0.33|ENSG00000140990|chr16:1961185-1961185|T/C|missense_variant	NDUFB10|p.Y55H|1|0.33|ENSG00000140990|chr16:1961185-1961185|T/C|missense_variant	NDUFB10|p.Y55H|1|0.33|ENSG00000140990|chr16:1961185-1961185|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	849.4270629882812	2	849.429639	1696.84472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.135	1	40.062	39.562	40.562	-0.072838								0	0	0	0.96208	1	15127	15127		0	0	1				27428	9690	17427	17519	26331	26331					0.02417561497350107
RIAGIRGIQGV	11	Unmodified	_RIAGIRGIQGV_					0	0	0		EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant;EFR3A|p.F760Lfs*4|1|0.26|ENSG00000132294|chr8:132002673-132002673|T/-|frameshift_variant;nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant	EFR3A|p.C516Afs*8|1|0.18|ENSG00000132294|chr8:131979390-131979390|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	570.3546752929688	2	570.354014	1138.69348	0.66242	0.00037781	0.036365	2.0741E-05	0.69878	0.00039855	570.3540773512306	36.223	0.25884	36.095	35.967	36.226	-0.12799					9	4	3	0	0	0	0.57532	1	13546	13546		38.176	15.439	1	33707000			27429	760	17428	17520	26332	26332					0.12967607136783954
RIDETRRSR	9	Unmodified	_RIDETRRSR_					0	0	0			REV__LRRK1|p.G57D|1|0.75|ENSG00000154237|chr15:100973876-100973876|G/A|missense_variant	REV__LRRK1|p.G57D|1|0.75|ENSG00000154237|chr15:100973876-100973876|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	594.8313598632812	2	594.831434	1187.64832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.74	1	10.74	10.24	11.24	0								0	0	0	0.76973	1	3318	3318		1.8442	0	1		+		27430	16991	17429	17521	26333	26333					0.06199756603609785
RIEDNSLLY	9	Unmodified	_RIEDNSLLY_					0	0	0		nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	MSMS	HCT116MG_D190212_S1	1	561.7933349609375	2	561.793121	1121.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.758	1	41.758	41.258	42.258	0								0	0	0	0.30238	1	15732	15732		39.95	1.9757	1				27431	5349	17430	17522	26334	26334					0.015765202637794573
RIEDNSLLY	9	Unmodified	_RIEDNSLLY_					0	0	0		nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	MULTI-MSMS	HCT116MG_D190212_S2	2	561.7927856445312	2	561.793121	1121.57169	0.57285	0.00032183	-0.11179	-6.2801E-05	0.46107	0.00025902	561.7929770558004	41.653	0.30922	41.584	41.447	41.756	-0.068195					13	5	3	0	0	0	0.090581	1	15756	15756		60.074	16.216	1	39562000			27432	5349	17430	17522	26335	26335					0.015765202637794573
RIEDNSLLY	9	Unmodified	_RIEDNSLLY_					0	0	0		nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	MULTI-MSMS	HCT116MG_D190212_S4	4	561.7928466796875	2	561.793121	1121.57169	0.22924	0.00012879	0.022267	1.2509E-05	0.25151	0.0001413	561.7929430709568	42.033	0.20464	41.657	41.53	41.735	-0.37637					5	3	2	0	0	0	0.28073	1	15448	15448		32.786	0	1	3465300			27433	5349	17430	17522	26336	26336					0.015765202637794573
RIEDNSLLY	9	Unmodified	_RIEDNSLLY_					0	0	0		nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	MULTI-MATCH	HCT116MG_D190212_S1	1		2	561.793121	1121.57169	0.72773	0.00040883	0.080497	4.5223E-05	0.80822	0.00045405	561.79287010693	41.68	0.20801	41.68	41.55	41.758	0	0.037024	8.1011E-05	NaN	60.074	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8981900			27434	5349	17430	17522							0.015765202637794573
RIEDNSLLY	9	Unmodified	_RIEDNSLLY_					0	0	0		nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	nc|ENSG00000174842|Q92990-2|GLMN	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	561.793121	1121.57169	0.32351	0.00018174	0.41564	0.00023351	0.73915	0.00041525	561.7932240804613	41.953	0.30048	41.651	41.48	41.781	-0.30257	0.0077152	0.00045758	NaN	60.074	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15041000			27435	5349	17430	17522							0.015765202637794573
RIEKQFLLY	9	Unmodified	_RIEKQFLLY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MSMS	HCT116MG_D190212_S1	1	605.353271484375	2	605.353148	1208.69174	0.49858	0.00030182	0.22595	0.00013678	0.72453	0.0004386	605.3532547442148	45.321	0.25911	45.321	45.192	45.451	0					6	4	2	0	0	0	0.26031	1	17193	17193		34.932	0	1	17502000			27436	1123	17431	17523	26337	26337					0.09574553328184265
RIEKQFLLY	9	Unmodified	_RIEKQFLLY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MSMS	HCT116MG_D190212_S2	2	605.3530883789062	2	605.353148	1208.69174	0.7266	0.00043985	0.18099	0.00010957	0.9076	0.00054942	605.3531412210972	45.285	0.3633	45.192	44.996	45.359	-0.092472					15	6	3	0	0	0	0.023778	1	17235	17235		92.653	0	1	80059000			27437	1123	17431	17523	26338	26338					0.09574553328184265
RIENEHSKR	9	Unmodified	_RIENEHSKR_					0	0	0			REV__PER2|p.E569Rfs*35|1|0.05|ENSG00000132326|chr2:238258568-238258568|G/-|frameshift_variant	REV__PER2|p.E569Rfs*35|1|0.05|ENSG00000132326|chr2:238258568-238258568|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	390.21240234375	3	390.210899	1167.61087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.487	1	61.226	60.726	61.726	-0.2602								0	0	0	0.76973	1	23197	23197		0.96228	0	1		+		27438	17408	17432	17524	26339	26339					0.03376665337987106
RIESELGP	8	Unmodified	_RIESELGP_					0	0	0			REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MSMS	HCT116MG_D190212_S1	1	450.7427673339844	2	450.742899	899.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.116	1	23.116	22.616	23.616	0								0	0	0	0.75335	1	8217	8217		26.341	0	1		+		27439	13014	17433	17525	26340	26340					0.017489080007521807
RIGFAKRTRKK	11	Unmodified	_RIGFAKRTRKK_					0	0	0			REV__SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant	REV__SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	454.2926940917969	3	454.293117	1359.85752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.687	1	61.448	60.948	61.948	-0.2387								0	0	0	0.9619	1	23549	23549		0.094841	0	1		+		27440	17514	17434	17526	26341	26341					0.19198624627506433
RIGPISKLNS	10	Unmodified	_RIGPISKLNS_					0	0	0		tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	tr|U7SFN9|U7SFN9_FUSNULipopolysaccharideheptosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02362PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	362.2220458984375	3	362.220624	1083.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.474	1	45.163	44.663	45.663	-0.31094								0	0	0	0.96465	1	17027	17027		1.4551	0.26178	1				27441	18290	17435	17527	26342	26342					0.10156809634258934
RIHLRRLLLL	10	Unmodified	_RIHLRRLLLL_					0	0	0		ENST00000481816.5_3_3:119298332-119299463:+|nuORF	ENST00000481816.5_3_3:119298332-119299463:+|nuORF	ENST00000481816.5_3_3:119298332-119299463:+|nuORF	MSMS	HCT116MG_D190212_S1	1	651.9486694335938	2	651.945873	1301.87719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.072	1	41.072	40.572	41.572	0								0	0	0	0.96937	1	15455	15455		0.40072	0	1				27442	8254	17436	17528	26343	26343					0.2383300063831939
RIIDTVAQV	9	Unmodified	_RIIDTVAQV_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	HCT116MG_D190212_S1	1	508.28192138671875	2	507.800749	1013.58694	0.45647	0.0002318	-0.62608	-0.00031793	-0.16961	-8.6129E-05	507.8008823092785	37.702	0.20881	37.702	37.602	37.811	0					5	3	2	0	0	0	0.21112	1	14113	14113		31.268	3.6395	1	4816300			27443	1847	17437	17529	26344	26344					0.08069431851617992
RIIDTVAQV	9	Unmodified	_RIIDTVAQV_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	HCT116MG_D190212_S2	2	507.8009338378906	2	507.800749	1013.58694	0.16462	8.3593E-05	0.25926	0.00013165	0.42388	0.00021525	507.80089328235414	37.82	0.20599	37.727	37.599	37.805	-0.09301					6	3	2	0	0	0	0.30874	1	14216	14216		29.841	3.5724	1	34485000			27444	1847	17437	17529	26345	26345					0.08069431851617992
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	HCT116MG_D190212_S1	1	531.801025390625	2	531.800749	1061.58694	0.72825	0.00038729	0.028061	1.4923E-05	0.75632	0.00040221	531.8006890950439	41.576	0.31265	41.576	41.393	41.706	0					14	5	3	0	0	0	0.029121	1	15639	15639		107.19	67.23	1	147830000			27445	3780	17438	17530	26346	26346					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	HCT116MG_D190212_S1	1	1062.5975341796875	1	1062.59422	1061.58694	1.1565	0.0012289	0.49623	0.00052729	1.6528	0.0017562	1062.594882991889	41.561	0.2083	41.561	41.445	41.654	0					6	3	2	0	0	0	0.031831	1	15684	15684		103.35	58.946	1	8092600			27446	3780	17438	17530	26347	26347					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	HCT116MG_D190212_S2	2	531.801025390625	2	531.800749	1061.58694	0.61578	0.00032747	-0.068612	-3.6488E-05	0.54717	0.00029098	531.8006488870807	41.591	0.56816	41.523	41.345	41.913	-0.068195					27	10	4	0	0	0	0.022505	1	15721	15721		103.35	63.396	1	558980000			27447	3780	17438	17530	26348	26348					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	HCT116MG_D190212_S2	2	1062.5948486328125	1	1062.59422	1061.58694	0.73963	0.00078593	0.016988	1.8051E-05	0.75662	0.00080398	1062.5940816821433	41.575	0.2043	41.507	41.396	41.601	-0.068195					8	3	3	0	0	0	0.0081783	1	15726	15726		142.08	98.221	1	66054000			27448	3780	17438	17530	26349	26349					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	HCT116MG_D190212_S3	3	532.3026123046875	2	531.800749	1061.58694	0.34645	0.00018424	0.29774	0.00015834	0.64419	0.00034258	531.8007938576288	41.797	0.24285	41.494	41.382	41.625	-0.30257					12	5	3	0	0	0	0.060947	1	15548	15548		85.642	55.005	1	24114000			27449	3780	17438	17530	26350	26350					0.058614318515992636
RIIFLKFNP	9	Unmodified	_RIIFLKFNP_					0	0	0			REV__nc|ENSG00000088247|Q92945|KHSRP	REV__nc|ENSG00000088247|Q92945|KHSRP	MSMS	HCT116MG_D190212_S1	1	383.2381591796875	3	383.237726	1146.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.093	1	38.093	37.593	38.593	0								0	0	0	0.76991	1	14252	14252		1.1933	0	1		+		27450	10954	17439	17531	26351	26351					0.12387178399012555
RIINLKYYHRL	11	Unmodified	_RIINLKYYHRL_					0	0	0			REV__ENSG00000139083|ENST00000396373|ETV6	REV__ENSG00000139083|ENST00000396373|ETV6	MULTI-MSMS	HCT116MG_D190212_S2	2	497.2975769042969	3	496.964777	1487.8725	0.3016	0.00014988	0.82531	0.00041015	1.1269	0.00056003	497.29858982331103	53.915	1.2326	53.726	53.172	54.405	-0.1894					37	23	2	0	0	0	0.74191	2	20671	20671;20816		4.7159	2.0847	1	16855000	+		27451	12247	17440	17532	26352;26353	26352					0.14808071704896975
RIKALIHKDK	10	Unmodified	_RIKALIHKDK_					0	0	0			REV__nc|ENSG00000127616|P51532-5|SMARCA4;REV__nc|ENSG00000080503|P51531-2|SMARCA2	REV__nc|ENSG00000127616|P51532-5|SMARCA4	MSMS	HCT116MG_D190212_S4	4	407.9325866699219	3	407.931185	1220.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5015	1	4.237	3.737	4.737	-0.26456								0	0	0	0.96804	1	1376	1376		0.69767	0	1		+		27452	11861;10862	17441	17533	26354	26354					0.1701703972200903
RIKRFLAKKQK	11	Unmodified	_RIKRFLAKKQK_					0	0	0		ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-MSMS	HCT116MG_D190212_S1	1	354.73846435546875	4	354.738494	1414.92487	-0.055786	-1.9789E-05	0.035111	1.2455E-05	-0.020675	-7.3342E-06	354.7385149297563	15.458	0.31257	15.458	15.327	15.64	0					10	5	3	0	0	0	0.61458	1	5159	5159		33.821	27.198	1	4308200			27453	6299	17442	17534	26355	26355					0.2340065483847411
RIKRFLAKKQK	11	Unmodified	_RIKRFLAKKQK_					0	0	0		ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-MSMS	HCT116MG_D190212_S1	1	472.6488952636719	3	472.6489	1414.92487	0.25972	0.00012275	-0.34385	-0.00016252	-0.084135	-3.9766E-05	472.6488088287123	15.458	0.26049	15.458	15.327	15.588	0					6	4	2	0	0	0	0.70254	1	5161	5161		20.871	3.8226	1	5147400			27454	6299	17442	17534	26356	26356					0.2340065483847411
RIKSKIDLKYK	11	Unmodified	_RIKSKIDLKYK_					0	0	0			REV__HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	REV__HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	696.4383544921875	2	696.440286	1390.86602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.38	1	62.131	61.631	62.631	-0.24919								0	0	0	0.96157	1	23554	23554		0.26902	0	1		+		27455	13308	17443	17535	26357	26357					0.1862213375347892
RIKYWDRRRRV	11	Unmodified	_RIKYWDRRRRV_					0	0	0		FAM47B|p.A534V|1|0.45|ENSG00000189132|chrX:34944432-34944432|C/T|missense_variant	FAM47B|p.A534V|1|0.45|ENSG00000189132|chrX:34944432-34944432|C/T|missense_variant	FAM47B|p.A534V|1|0.45|ENSG00000189132|chrX:34944432-34944432|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	802.4727783203125	2	802.473849	1602.93315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.53	1	53.53	53.03	54.03	0								0	0	0	0.96208	1	20503	20503		0	0	1				27456	9149	17444	17536	26358	26358					0.15579601807780818
RILDESHSI	9	Unmodified	_RILDESHSI_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant;CHD8|p.V1538*|1|0.4|ENSG00000100888|chr14:21400267-21400267|T/-|frameshift_variant;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MSMS	HCT116MG_D190212_S2	2	535.2847290039062	2	535.285463	1068.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.311	1	30.026	29.526	30.526	-0.28453								0	0	0	0.38321	1	11138	11138		34.402	0	1				27457	432	17445	17537	26359	26359					0.024836534665837462
RILIKRLYR	9	Unmodified	_RILIKRLYR_					0	0	0			REV__ENSG00000180251|ENST00000295269|SLC9A4	REV__ENSG00000180251|ENST00000295269|SLC9A4	MSMS	HCT116MG_D190212_S3	3	615.9088134765625	2	615.911499	1229.80845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.72	1	48.404	47.904	48.904	-0.31596								0	0	0	0.76902	1	18332	18332		4.3292	0	1		+		27458	13654	17446	17538	26360	26360					0.20273336338595982
RILIVHLKR	9	Unmodified	_RILIVHLKR_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MSMS	HCT116MG_D190212_S2	2	383.2096862792969	3	383.264387	1146.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.808	1	54.62	54.12	55.12	-0.18797								0	0	0	0.77018	1	21111	21111		0.26902	0	1				27459	3294	17447	17539	26361	26361					0.20381664792830634
RILKKKKKKTR	11	Unmodified	_RILKKKKKKTR_					0	0	0		ENST00000427154.1_1_1:23346896-23414436:-|nuORF	ENST00000427154.1_1_1:23346896-23414436:-|nuORF	ENST00000427154.1_1_1:23346896-23414436:-|nuORF	MSMS	HCT116MG_D190212_S2	2	714.0046997070312	2	714.006462	1425.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.948	1	41.88	41.38	42.38	-0.068199								0	0	0	0.96208	1	15865	15865		0	0	1				27460	7820	17448	17540	26362	26362					0.3024120328095705
RILMRFLIRLF	11	Unmodified	_RILMRFLIRLF_					0	0	0			REV__nc|ENSG00000141449|Q9C091-3|GREB1L	REV__nc|ENSG00000141449|Q9C091-3|GREB1L	MSMS	HCT116MG_D190212_S2	2	493.3114318847656	3	493.31112	1476.91153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8661	1	1.8529	1.3529	2.3529	-0.013221								0	0	0	0.96208	1	604	604		0	0	1		+		27461	12333	17449	17541	26363	26363					0.19215080734898038
RIMRVLRIAR	10	Unmodified	_RIMRVLRIAR_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;CACNA1G|p.E2317Rfs*47|1|0.22|ENSG00000006283|chr17:50626559-50626559|C/-|frameshift_variant;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;CACNA1G|p.P2298Afs*13|1|0.4|ENSG00000006283|chr17:50626502-50626503|-/G|frameshift_variant;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G;CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H;CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000006283|O43497-27|CACNA1G;CACNA1H|p.C2191Afs*26|4|0.28|ENSG00000196557|chr16:1220496-1220496|C/-|frameshift_variant	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MSMS	HCT116MG_D190212_S2	2	642.414306640625	2	642.413883	1282.81321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.585	1	37.482	36.982	37.982	-0.10318								0	0	0	0.95507	1	14093	14093		3.5965	0	1				27462	1692;9361;307	17450	17542	26364	26364					0.18311897209696326
RININMEELR	10	Unmodified	_RININMEELR_					0	0	0			REV__ENSG00000160299|ENST00000359568|PCNT	REV__ENSG00000160299|ENST00000359568|PCNT	MSMS	HCT116MG_D190212_S2	2	429.70306396484375	3	429.899445	1286.6765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.646	1	32.435	31.935	32.935	-0.21135								0	0	0	0.94698	1	12086	12086		5.4027	0.99656	1		+		27463	12828	17451	17543	26365	26365					0.04463318468674515
RIPLLIIGLLV	11	Unmodified	_RIPLLIIGLLV_					0	0	0			REV__ENST00000566911.1_1_16:55543042-55559560:+|nuORF	REV__ENST00000566911.1_1_16:55543042-55559560:+|nuORF	MSMS	HCT116MG_D190212_S1	1	407.21142578125	3	407.288198	1218.84277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.422	1	58.422	57.922	58.922	0								0	0	0	0.9619	1	22505	22505		0.094841	0	1		+		27464	10947	17452	17544	26366	26366					0.24209739706839173
RIPSAQGRQK	10	Unmodified	_RIPSAQGRQK_					0	0	0		ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	MSMS	HCT116MG_D190212_S4	4	380.8904724121094	3	380.891389	1139.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.646	1	64.414	63.914	64.914	-0.2319								0	0	0	0.96804	1	24315	24315		0.69767	0	1				27465	6152	17453	17545	26367	26367					0.08809846097301488
RIPSFVTEL	9	Unmodified	_RIPSFVTEL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;GBF1|p.S1486Tfs*46|1|0.17|ENSG00000107862|chr10:102377105-102377106|-/C|frameshift_variant;GBF1|p.S825Pfs*25|1|0.34|ENSG00000107862|chr10:102367124-102367124|T/-|frameshift_variant	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	HCT116MG_D190212_S2	2	531.303955078125	2	531.303124	1060.5917	0.30667	0.00016293	0.14105	7.4938E-05	0.44772	0.00023787	531.303114868289	53.523	0.46323	53.334	52.966	53.429	-0.1894					11	8	2	0	0	0	0.10244	1	20604	20604		57.722	19.748	1	7830700			27466	9417	17454	17546	26368	26368					0.06382315994369492
RIREKFFN	8	Unmodified	_RIREKFFN_					0	0	0		tr|U7SWL2|U7SWL2_FUSNUDNArepairproteinRadCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01086PE=3SV=1	tr|U7SWL2|U7SWL2_FUSNUDNArepairproteinRadCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01086PE=3SV=1	tr|U7SWL2|U7SWL2_FUSNUDNArepairproteinRadCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01086PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	556.0106201171875	2	555.314358	1108.61416	0.4218	0.00023423	-1.2622	-0.00070094	-0.84044	-0.00046671	555.313616345102	56.994	0.20697	56.994	56.893	57.1	0					8	3	3	0	0	0	0.82475	1	21882	21882		8.5933	1.8701	1	26962000			27467	18502	17455	17547	26369	26369					0.06419960182665818
RIRILLRGLW	10	Unmodified	_RIRILLRGLW_					0	0	0		ENST00000461783.7_3_6:155532388-155561841:+|nuORF	ENST00000461783.7_3_6:155532388-155561841:+|nuORF	ENST00000461783.7_3_6:155532388-155561841:+|nuORF	MSMS	HCT116MG_D190212_S2	2	648.4248046875	2	648.424774	1294.83499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.602	1	59.442	58.942	59.942	-0.16012								0	0	0	0.96911	1	23050	23050		0.45834	0.10771	1				27468	8059	17456	17548	26370	26370					0.19937025229955907
RIRILLRGLW	10	Unmodified	_RIRILLRGLW_					0	0	0		ENST00000461783.7_3_6:155532388-155561841:+|nuORF	ENST00000461783.7_3_6:155532388-155561841:+|nuORF	ENST00000461783.7_3_6:155532388-155561841:+|nuORF	MSMS	HCT116MG_D190212_S2	2	648.42431640625	2	648.424774	1294.83499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.754	1	59.594	59.094	60.094	-0.16012								0	0	0	0.96911	1	23112	23112		0.45834	0.10771	1				27469	8059	17456	17548	26371	26371					0.19937025229955907
RIRMKVKLLHP	11	Unmodified	_RIRMKVKLLHP_					0	0	0		ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	464.2994689941406	3	464.299103	1389.87548	0.19337	8.9779E-05	0.72048	0.00033452	0.91384	0.0004243	464.299357469173	56.103	0.56591	56.103	55.811	56.377	0					18	10	2	0	0	0	0.74191	1	21623	21623		0.45452	0.45452	1	35868000			27470	8808	17457	17549	26372	26372					0.19613623558052495
RIRMKVKLLHP	11	Unmodified	_RIRMKVKLLHP_					0	0	0		ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	464.299103	1389.87548	0.19337	8.9779E-05	0.72048	0.00033452	0.91384	0.0004243	464.299357469173	56.103	0.56591	56.103	55.811	56.377	0	-0.012691	-0.00017274	NaN	0.45452	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35868000			27471	8808	17457	17549							0.19613623558052495
RIRMKVKLLHP	11	Unmodified	_RIRMKVKLLHP_					0	0	0		ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	464.299103	1389.87548	0.29757	0.00013816	0.81378	0.00037784	1.1114	0.000516	464.29938538650873	56.261	0.62423	56.078	55.847	56.471	-0.18261	-0.03785	-4.2784E-05	NaN	0.45452	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121110000			27472	8808	17457	17549							0.19613623558052495
RIRMKVKLLHP	11	Unmodified	_RIRMKVKLLHP_					0	0	0		ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	464.299103	1389.87548	0.4603	0.00021372	0.65369	0.00030351	1.114	0.00051722	464.63383052178716	56.378	0.31458	56.094	55.993	56.307	-0.28367	-0.021515	-0.00026577	NaN	0.45452	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	847980			27473	8808	17457	17549							0.19613623558052495
RIRMKVKLLHP	11	Unmodified	_RIRMKVKLLHP_					0	0	0		ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	ENST00000559596.5_1_15:41634623-41643204:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	464.299103	1389.87548	0.15457	7.1765E-05	1.1962	0.0005554	1.3508	0.00062717	464.29972839243555	56.494	0.36794	56.188	55.937	56.305	-0.30626	0.072055	0.00048992	NaN	0.45452	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2608000			27474	8808	17457	17549							0.19613623558052495
RIRPLRKYYFP	11	Unmodified	_RIRPLRKYYFP_					0	0	0		ENST00000397387.2_1_13:101408869-101409262:-|nuORF	ENST00000397387.2_1_13:101408869-101409262:-|nuORF	ENST00000397387.2_1_13:101408869-101409262:-|nuORF	MSMS	HCT116MG_D190212_S1	1	754.946533203125	2	754.94607	1507.87759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.791	1	43.791	43.291	44.291	0								0	0	0	0.96141	1	16554	16554		0.35063	0	1				27475	7667	17458	17550	26373	26373					0.14396375567503128
RIRPRRLLRA	10	Unmodified	_RIRPRRLLRA_					0	0	0		ENST00000483554.1_1_17:27043919-27044341:-|nuORF	ENST00000483554.1_1_17:27043919-27044341:-|nuORF	ENST00000483554.1_1_17:27043919-27044341:-|nuORF	MSMS	HCT116MG_D190212_S2	2	436.2917175292969	3	436.29334	1305.85819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.507	1	55.321	54.821	55.821	-0.18565								0	0	0	0.96836	1	21398	21398		0.62683	0.4675	1				27476	8273	17459	17551	26374	26374					0.21749464067261215
RIRWKRERSRS	11	Unmodified	_RIRWKRERSRS_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	510.6335144042969	3	510.634313	1528.88111	0.48783	0.0002491	0.023188	1.184E-05	0.51102	0.00026094	510.6341642646272	53.608	0.82336	53.608	52.999	53.822	0					33	15	3	0	0	0	0.74191	1	20392	20392		0.40827	0.31342	1	61757000	+		27477	17484	17460	17552	26375	26375					0.13782438394059682
RIRWKRERSRS	11	Unmodified	_RIRWKRERSRS_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	510.63385009765625	3	510.634313	1528.88111	0.30279	0.00015462	0.33348	0.00017028	0.63627	0.0003249	510.6343574807025	55.231	1.7929	55.043	53.792	55.585	-0.18797					108	34	5	0	0	0	0.74191	1	20948	20948		1.3296	0.92138	1	288140000	+		27478	17484	17460	17552	26376	26376					0.13782438394059682
RIRWKRERSRS	11	Unmodified	_RIRWKRERSRS_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	510.9688415527344	3	510.634313	1528.88111	0.31646	0.00016159	0.049091	2.5068E-05	0.36555	0.00018666	510.63420557953395	55.338	1.0941	55.021	54.198	55.292	-0.31774					48	20	3	0	0	0	0.74191	1	20721	20721		1.3296	0.92138	1	9956500	+		27479	17484	17460	17552	26377	26377					0.13782438394059682
RIRWKRERSRS	11	Unmodified	_RIRWKRERSRS_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	510.634313	1528.88111	0.48783	0.0002491	0.023188	1.184E-05	0.51102	0.00026094	510.6341642646272	53.608	0.82336	53.608	52.999	53.822	0	0	0	NaN	0.40827	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61757000	+		27480	17484	17460	17552							0.13782438394059682
RIRWKRERSRS	11	Unmodified	_RIRWKRERSRS_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		3	510.634313	1528.88111	0.18484	9.4387E-05	0.25748	0.00013148	0.44233	0.00022587	510.96907255782844	55.349	0.4707	55.057	54.665	55.136	-0.2918	0.016937	1.5501E-05	NaN	1.3296	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1407200	+		27481	17484	17460	17552							0.13782438394059682
RIRYRKKKE	9	Unmodified	_RIRYRKKKE_					0	0	0		SP140|p.R673Efs*9|1|0.3|ENSG00000079263|chr2:230294309-230294310|-/A|frameshift_variant	SP140|p.R673Efs*9|1|0.3|ENSG00000079263|chr2:230294309-230294310|-/A|frameshift_variant	SP140|p.R673Efs*9|1|0.3|ENSG00000079263|chr2:230294309-230294310|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	426.26995849609375	3	426.270201	1275.78877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.314	1	58.144	57.644	58.644	-0.1703								0	0	0	0.76998	1	22534	22534		0.96228	0.26461	1				27482	18224	17461	17553	26378	26378					0.16190960327821813
RISDVHFSV	9	Unmodified	_RISDVHFSV_					0	0	0		CBX6|p.L242Wfs*2|2|0.44|ENSG00000183741|chr22:38866724-38866724|G/-|frameshift_variant;ENSG00000183741|ENST00000407418|CBX6	CBX6|p.L242Wfs*2|2|0.44|ENSG00000183741|chr22:38866724-38866724|G/-|frameshift_variant	CBX6|p.L242Wfs*2|2|0.44|ENSG00000183741|chr22:38866724-38866724|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2825317382812	2	530.282723	1058.55089	0.090753	4.8125E-05	-0.20662	-0.00010957	-0.11587	-6.1443E-05	530.2819357417618	39.32	0.56059	39.32	39.201	39.761	0					20	11	3	0	0	0	0.034046	1	14769	14769		82.529	57.13	1	43547000			27483	339	17462	17554	26379	26379					0.023959746747550525
RISDVHFSV	9	Unmodified	_RISDVHFSV_					0	0	0		CBX6|p.L242Wfs*2|2|0.44|ENSG00000183741|chr22:38866724-38866724|G/-|frameshift_variant;ENSG00000183741|ENST00000407418|CBX6	CBX6|p.L242Wfs*2|2|0.44|ENSG00000183741|chr22:38866724-38866724|G/-|frameshift_variant	CBX6|p.L242Wfs*2|2|0.44|ENSG00000183741|chr22:38866724-38866724|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2828979492188	2	530.282723	1058.55089	0.62404	0.00033092	-0.22073	-0.00011705	0.40331	0.00021387	530.2824362057017	39.33	0.30928	39.252	39.07	39.379	-0.077835					11	5	3	0	0	0	0.0059958	1	14804	14804		128.93	92.805	1	100420000			27484	339	17462	17554	26380	26380					0.023959746747550525
RISKLLVYH	9	Unmodified	_RISKLLVYH_					0	0	0			REV__ENSG00000165175|ENST00000614558|MID1IP1	REV__ENSG00000165175|ENST00000614558|MID1IP1	MSMS	HCT116MG_D190212_S1	1	376.9015197753906	3	376.901114	1127.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.591	1	10.591	10.091	11.091	0								0	0	0	0.77008	1	3261	3261		0.26902	0	1		+		27485	13037	17463	17555	26381	26381					0.12277990393613436
RISLIKEKFL	10	Unmodified	_RISLIKEKFL_					0	0	0		ENST00000341772.4_1_2:230222916-230223054:-|nuORF	ENST00000341772.4_1_2:230222916-230223054:-|nuORF	ENST00000341772.4_1_2:230222916-230223054:-|nuORF	MSMS	HCT116MG_D190212_S1	1	416.2676696777344	3	416.267574	1245.78089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.644	1	54.644	54.144	55.144	0								0	0	0	0.97045	1	20961	20961		0.15932	0	1				27486	7223	17464	17556	26382	26382					0.16783388287694834
RISPDRVY	8	Unmodified	_RISPDRVY_					0	0	0		ENST00000498385.1_1_22:24236898-24237290:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000498385.1_1_22:24236898-24237290:+|nuORF	ENST00000498385.1_1_22:24236898-24237290:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	503.2776184082031	2	503.277441	1004.54033	0.29003	0.00014596	0.77413	0.0003896	1.0642	0.00053557	503.277753039355	25.464	0.31266	25.464	25.301	25.614	0					10	5	3	0	0	0	0.36353	1	9171	9171		53.404	21.099	1	7142600			27487	6541	17465	17557	26383	26383					0.03823992020318201
RISTVRKG	8	Unmodified	_RISTVRKG_					0	0	0			REV__CPVL|p.V418Ffs*24|1|0.39|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant	REV__CPVL|p.V418Ffs*24|1|0.39|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	458.614990234375	2	458.787976	915.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.139	1	52.836	52.336	53.336	-0.30305								0	0	0	0.8837	1	20105	20105		4.756	0	1		+		27488	10290	17466	17558	26384	26384					0.10024002119848774
RITNQVIYL	9	Unmodified	_RITNQVIYL_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	560.3291015625	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.504	1	47.504	47.004	48.004	0								0	0	0	0.76759	1	18051	18051		9.3831	0.035688	1				27489	741	17467	17559	26385	26385					0.09021693777026485
RIWQFKRREWK	11	Unmodified	_RIWQFKRREWK_					0	0	0		PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant;ENSG00000146247|ENST00000275034|PHIP	PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant	PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	544.9774169921875	3	544.979309	1631.9161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.629	1	50.274	49.774	50.774	-0.35483								0	0	0	0.96208	1	18817	18817		0	0	1				27490	3943	17468	17560	26386	26386					0.12541681202014843
RIYRLFKLL	9	Unmodified	_RIYRLFKLL_					0	0	0			REV__ENST00000563094.5_1_16:69200987-69201092:+|nuORF	REV__ENST00000563094.5_1_16:69200987-69201092:+|nuORF	MSMS	HCT116MG_D190212_S1	1	407.9323425292969	3	407.932526	1220.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2736	1	4.2736	3.7736	4.7736	0								0	0	0	0.77025	1	1284	1284		0	0	1		+		27491	16506	17469	17561	26387	26387					0.17419129215772955
RIYRLFKLL	9	Unmodified	_RIYRLFKLL_					0	0	0			REV__ENST00000563094.5_1_16:69200987-69201092:+|nuORF	REV__ENST00000563094.5_1_16:69200987-69201092:+|nuORF	MSMS	HCT116MG_D190212_S1	1	407.9325256347656	3	407.932526	1220.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8242	1	4.8242	4.3242	5.3242	0								0	0	0	0.77025	1	1453	1453		0	0	1		+		27492	16506	17469	17561	26388	26388					0.17419129215772955
RIYRLFKLL	9	Unmodified	_RIYRLFKLL_					0	0	0			REV__ENST00000563094.5_1_16:69200987-69201092:+|nuORF	REV__ENST00000563094.5_1_16:69200987-69201092:+|nuORF	MSMS	HCT116MG_D190212_S1	1	407.9326171875	3	407.932526	1220.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9842	1	6.9842	6.4842	7.4842	0								0	0	0	0.77025	1	2110	2110		0	0	1		+		27493	16506	17469	17561	26389	26389					0.17419129215772955
RKAYRKLSLTL	11	Unmodified	_RKAYRKLSLTL_					0	0	0		ENST00000447548.5_3_10:22208848-22292309:-|nuORF;DNAJC1|p.Q326Tfs*4|1|0.32|ENSG00000136770|chr10:21882284-21882285|-/T|frameshift_variant;DNAJC1|p.K325Nfs*14|1|0.38|ENSG00000136770|chr10:21882285-21882285|T/-|frameshift_variant;DNAJC1|p.V420Gfs*13|1|0.13|ENSG00000136770|chr10:21759507-21759508|-/C|frameshift_variant;ENSG00000136770|ENST00000376980|DNAJC1	ENST00000447548.5_3_10:22208848-22292309:-|nuORF	ENST00000447548.5_3_10:22208848-22292309:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	674.9244384765625	2	674.924803	1347.83505	0.63785	0.0004305	-0.93822	-0.00063323	-0.30037	-0.00020272	674.9239097892394	60.883	2.0171	60.883	60.387	62.404	0					62	38	2	0	0	0	0.74191	1	23595	23595		1.0715	0.10919	1	21415000			27494	714	17470	17562	26390	26390					0.17504980439252904
RKCDGEEIV	9	Unmodified	_RKCDGEEIV_					0	0	0			REV__PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant	REV__PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	350.1749267578125	3	350.174574	1047.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.266	1	58.095	57.595	58.595	-0.1703								0	0	0	0.7696	1	22514	22514		1.1933	0.41681	1		+		27495	11109	17471	17563	26391	26391					-0.01995681676521599
RKEKLLVKI	9	Unmodified	_RKEKLLVKI_					0	0	0		ENST00000398505.7_1_21:43413696-43413789:-|nuORF	ENST00000398505.7_1_21:43413696-43413789:-|nuORF	ENST00000398505.7_1_21:43413696-43413789:-|nuORF	MSMS	HCT116MG_D190212_S2	2	376.26104736328125	3	376.260531	1125.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.125	1	61.989	61.489	62.489	-0.13585								0	0	0	0.77019	1	24074	24074		0.23584	0	1				27496	7684	17472	17564	26392	26392					0.2019142297883718
RKEQNKQTLIL	11	Unmodified	_RKEQNKQTLIL_					0	0	0			REV__TTF2|p.K619Rfs*10|1|0.36|ENSG00000116830|chr1:117081896-117081896|A/-|frameshift_variant	REV__TTF2|p.K619Rfs*10|1|0.36|ENSG00000116830|chr1:117081896-117081896|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	458.2955322265625	3	457.608659	1369.80415	-0.043922	-2.0099E-05	-0.84775	-0.00038794	-0.89168	-0.00040804	457.6081613401768	51.264	0.97519	51.264	50.574	51.549	0					39	18	4	0	0	0	0.36616	1	19595	19595		1.4551	0	1	56527000	+		27497	18025	17473	17565	26393	26393					0.13403782334376046
RKFKRKKDK	9	Unmodified	_RKFKRKKDK_					0	0	0			REV__ENSG00000171451|ENST00000310045|DSEL	REV__ENSG00000171451|ENST00000310045|DSEL	MSMS	HCT116MG_D190212_S3	3	617.4007568359375	2	617.398756	1232.78296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.166	1	61.935	61.435	62.435	-0.23129								0	0	0	0.77012	1	23743	23743		0.45834	0.10771	1		+		27498	13345	17474	17566	26394	26394					0.17587861816173245
RKFLKKKLERL	11	Unmodified	_RKFLKKKLERL_					0	0	0			REV__ENST00000354588.7_1_11:62430524-62435168:-|nuORF	REV__ENST00000354588.7_1_11:62430524-62435168:-|nuORF	MSMS	HCT116MG_D190212_S3	3	729.986572265625	2	729.985195	1457.95584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.231	1	24.17	23.67	24.67	-0.061449								0	0	0	0.96208	1	8595	8595		0	0	1		+		27499	15032	17475	17567	26395	26395					0.24517808152745602
RKFTKKIRK	9	Unmodified	_RKFTKKIRK_					0	0	0		tr|U7SM51|U7SM51_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02083PE=4SV=1	tr|U7SM51|U7SM51_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02083PE=4SV=1	tr|U7SM51|U7SM51_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02083PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	402.2702941894531	3	402.271542	1203.7928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.516	1	30.231	29.731	30.731	-0.28453								0	0	0	0.77019	1	11222	11222		0.23584	0	1				27500	18345	17476	17568	26396	26396					0.1990504982152288
RKFYLKKRKF	10	Unmodified	_RKFYLKKRKF_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S1	1	471.9664306640625	3	471.96623	1412.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.822	1	10.822	10.322	11.322	0								0	0	0	0.97116	1	3351	3351		0	0	1				27501	7239	17477	17569	26397	26397					0.18693580918420594
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S1	1	432.2805480957031	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.146	1	36.146	35.646	36.646	0								0	0	0	0.76998	1	13468	13468		0.96228	0.3991	1				27502	7239	17478	17570	26398	26398					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S2	2	432.2803649902344	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.003	1	44.91	44.41	45.41	-0.092472								0	0	0	0.76998	1	17104	17104		0.96228	0.5956	1				27503	7239	17478	17570	26399	26399					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S2	2	432.28057861328125	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.315	1	60.161	59.661	60.661	-0.15441								0	0	0	0.77019	1	23341	23341		0.23584	0.076522	1				27504	7239	17478	17570	26400	26400					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S3	3	432.280029296875	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.027	1	39.726	39.226	40.226	-0.30137								0	0	0	0.76995	1	14846	14846		1.0715	0.3738	1				27505	7239	17478	17570	26401	26401					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S3	3	432.28021240234375	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.704	1	45.393	44.893	45.893	-0.31094								0	0	0	0.76995	1	17119	17119		1.0715	0.70479	1				27506	7239	17478	17570	26402	26402					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S3	3	432.28033447265625	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.553	1	48.237	47.737	48.737	-0.31596								0	0	0	0.76995	1	18264	18264		1.0715	0.9486	1				27507	7239	17478	17570	26403	26403					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S3	3	432.2799987792969	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.824	1	57.55	57.05	58.05	-0.27434								0	0	0	0.76995	1	21983	21983		1.0715	0.9486	1				27508	7239	17478	17570	26404	26404					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2804260253906	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.438	1	40.06	39.56	40.56	-0.37828								0	0	0	0.76995	1	14836	14836		1.0715	0.70479	1				27509	7239	17478	17570	26405	26405					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2803039550781	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.137	1	41.761	41.261	42.261	-0.37565								0	0	0	0.76995	1	15476	15476		1.0715	0.44464	1				27510	7239	17478	17570	26406	26406					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2803039550781	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.338	1	43.965	43.465	44.465	-0.37373								0	0	0	0.76995	1	16331	16331		1.0715	0.91214	1				27511	7239	17478	17570	26407	26407					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.28021240234375	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.209	1	46.839	46.339	47.339	-0.37038								0	0	0	0.76995	1	17455	17455		1.0715	0.70479	1				27512	7239	17478	17570	26408	26408					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2803955078125	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.778	1	47.409	46.909	47.909	-0.36907								0	0	0	0.76995	1	17672	17672		1.0715	0.91214	1				27513	7239	17478	17570	26409	26409					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.28045654296875	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.35	1	47.983	47.483	48.483	-0.36728								0	0	0	0.76995	1	17904	17904		1.0715	0.6632	1				27514	7239	17478	17570	26410	26410					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2799987792969	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.909	1	48.544	48.044	49.044	-0.365								0	0	0	0.76995	1	18123	18123		1.0715	0.91214	1				27515	7239	17478	17570	26411	26411					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2797546386719	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.032	1	49.673	49.173	50.173	-0.35878								0	0	0	0.76995	1	18575	18575		1.0715	0.91214	1				27516	7239	17478	17570	26412	26412					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.28033447265625	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.657	1	50.303	49.803	50.803	-0.35483								0	0	0	0.76995	1	18828	18828		1.0715	0.56551	1				27517	7239	17478	17570	26413	26413					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2803955078125	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.56	1	53.225	52.725	53.725	-0.33473								0	0	0	0.76995	1	20000	20000		1.0715	0.91214	1				27518	7239	17478	17570	26414	26414					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2803039550781	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.14	1	53.81	53.31	54.31	-0.32923								0	0	0	0.76995	1	20234	20234		1.0715	0.91214	1				27519	7239	17478	17570	26415	26415					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2804870605469	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.706	1	54.382	53.882	54.882	-0.32349								0	0	0	0.76995	1	20462	20462		1.0715	0.44464	1				27520	7239	17478	17570	26416	26416					0.17943854570103213
RKFYLRKRK	9	Unmodified	_RKFYLRKRK_					0	0	0		ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	ENST00000342992.10_3_2:179540701-179542581:-|nuORF	MSMS	HCT116MG_D190212_S4	4	432.2803955078125	3	432.278808	1293.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.279	1	54.961	54.461	55.461	-0.31774								0	0	0	0.76995	1	20693	20693		1.0715	0.70479	1				27521	7239	17478	17570	26417	26417					0.17943854570103213
RKGAGGGI	8	Unmodified	_RKGAGGGI_					0	0	0			REV__ENST00000480534.1_1_2:138722154-138746187:+|nuORF	REV__ENST00000480534.1_1_2:138722154-138746187:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	715.424072265625	1	715.420948	714.413671	1.1021	0.00078846	4.3145	0.0030867	5.4166	0.0038751	715.4234474905116	56.627	0.73599	56.445	56.259	56.995	-0.18261					21	13	2	0	0	0	0.86564	1	21874	21874		2.5775	0	1	69795000	+		27522	15947	17479	17571	26418	26418					0.04504110585844501
RKGGRAPG	8	Unmodified	_RKGGRAPG_					0	0	0		ENST00000284503.6_1_8:11627337-11627439:+|nuORF	ENST00000284503.6_1_8:11627337-11627439:+|nuORF	ENST00000284503.6_1_8:11627337-11627439:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	399.73822021484375	2	399.738286	797.462019	0.13192	5.2734E-05	0.23665	9.4597E-05	0.36857	0.00014733	399.7383329380152	41.812	0.92847	41.812	40.986	41.914	0					22	17	2	0	0	0	0.8672	1	15770	15770		2.3027	0	1	9063300			27523	6944	17480	17572	26419	26419					0.055186042257560075
RKGGRAPG	8	Unmodified	_RKGGRAPG_					0	0	0		ENST00000284503.6_1_8:11627337-11627439:+|nuORF	ENST00000284503.6_1_8:11627337-11627439:+|nuORF	ENST00000284503.6_1_8:11627337-11627439:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	399.73834228515625	2	399.738286	797.462019	-0.13158	-5.2596E-05	0.46278	0.00018499	0.33121	0.0001324	399.7382579142566	47.535	0.24584	47.535	47.349	47.595	0					8	4	2	0	0	0	0.8672	1	18062	18062		2.3027	0	1	10399000			27524	6944	17480	17572	26420	26420					0.055186042257560075
RKGGRSLV	8	Unmodified	_RKGGRSLV_					0	0	0			REV__ENSG00000197471|ENST00000652691|SPN	REV__ENSG00000197471|ENST00000652691|SPN	MULTI-MSMS	HCT116MG_D190212_S1	1	873.6152954101562	1	872.54246	871.535184	0.6022	0.00052545	-1.1666	-0.0010179	-0.56438	-0.00049244	872.541275732903	48.79	0.51614	48.79	48.563	49.079	0					31	9	5	0	0	0	0.84759	1	18571	18571		5.7604	0	1	997640000	+		27525	14075	17481	17573	26421	26421					0.09427732948370249
RKGGRSLV	8	Unmodified	_RKGGRSLV_					0	0	0			REV__ENSG00000197471|ENST00000652691|SPN	REV__ENSG00000197471|ENST00000652691|SPN	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	872.54246	871.535184	0.6022	0.00052545	-1.1666	-0.0010179	-0.56438	-0.00049244	872.541275732903	48.79	0.51614	48.79	48.563	49.079	0	0	0	NaN	5.7604	31	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	997640000	+		27526	14075	17481	17573							0.09427732948370249
RKGPEGKYPL	10	Unmodified	_RKGPEGKYPL_					0	0	0		ANKRD13B|p.G319Afs*7|1|0.46|ENSG00000198720|chr17:29611626-29611626|G/-|frameshift_variant;ENSG00000198720|ENST00000394859|ANKRD13B	ANKRD13B|p.G319Afs*7|1|0.46|ENSG00000198720|chr17:29611626-29611626|G/-|frameshift_variant	ANKRD13B|p.G319Afs*7|1|0.46|ENSG00000198720|chr17:29611626-29611626|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	382.22052001953125	3	382.220624	1143.64004	-0.077172	-2.9497E-05	0.13721	5.2443E-05	0.060035	2.2947E-05	382.2205987574228	24.829	0.57235	24.453	24.087	24.66	-0.37521					28	10	4	0	0	0	0.67142	1	8855	8855		22.775	2.194	1	137810000			27527	136	17482	17574	26422	26422					0.0739680963426963
RKGPEGKYPL	10	Unmodified	_RKGPEGKYPL_					0	0	0		ANKRD13B|p.G319Afs*7|1|0.46|ENSG00000198720|chr17:29611626-29611626|G/-|frameshift_variant;ENSG00000198720|ENST00000394859|ANKRD13B	ANKRD13B|p.G319Afs*7|1|0.46|ENSG00000198720|chr17:29611626-29611626|G/-|frameshift_variant	ANKRD13B|p.G319Afs*7|1|0.46|ENSG00000198720|chr17:29611626-29611626|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	572.8276977539062	2	572.827298	1143.64004	0.34438	0.00019727	0.14143	8.1013E-05	0.48581	0.00027828	572.827385464976	24.259	0.57254	24.198	23.791	24.363	-0.061449					19	10	3	0	0	0	0.64623	1	8580	8580		22.736	22.736	1	8318600			27528	136	17482	17574	26423	26423					0.0739680963426963
RKHKRDLYFLI	11	Unmodified	_RKHKRDLYFLI_					0	0	0		tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	tr|U7STA4|U7STA4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00983PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	497.29840087890625	3	496.964777	1487.8725	0.3016	0.00014988	0.82531	0.00041015	1.1269	0.00056003	497.29858982331103	53.915	1.2326	53.726	53.172	54.405	-0.1894					37	23	2	0	0	0	0.74191	1	20717	20717		1.4551	0.12547	1	16855000			27529	18431	17483	17575	26424	26424					0.14808071704896975
RKHRQHFKK	9	Unmodified	_RKHRQHFKK_					0	0	0		ENSG00000024526|ENST00000456315|DEPDC1;nc|ENSG00000024526|Q5TB30-2|DEPDC1	ENSG00000024526|ENST00000456315|DEPDC1	ENSG00000024526|ENST00000456315|DEPDC1	MSMS	HCT116MG_D190212_S4	4	422.2529602050781	3	422.254773	1263.74249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.675	1	41.298	40.798	41.798	-0.37637								0	0	0	0.76954	1	15292	15292		2.4985	0.75621	1				27530	952	17484	17576	26425	26425					0.12116940216401417
RKHVRPKK	8	Unmodified	_RKHVRPKK_					0	0	0		PRCC-RRNAD1|3|fusion;PRCC-RRNAD1|2|fusion	PRCC-RRNAD1|3|fusion	PRCC-RRNAD1|3|fusion	MSMS	HCT116MG_D190212_S2	2	350.0742492675781	3	350.233198	1047.67777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.151	1	62.015	61.515	62.515	-0.13585								0	0	0	0.8837	1	24085	24085		0.45834	0	1				27531	9775	17485	17577	26426	26426					0.15583365410407168
RKIIPRSKAF	10	Unmodified	_RKIIPRSKAF_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1;REV__HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant	REV__HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	608.3853759765625	2	608.387857	1214.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.711	1	54.521	54.021	55.021	-0.1894								0	0	0	0.94746	1	21071	21071		5.2969	2.0156	1		+		27532	12222;10464	17486	17578	26427	26427					0.16237057067610294
RKILVAVILPI	11	Unmodified	_RKILVAVILPI_					0	0	0			REV__tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1	REV__tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	412.2018737792969	3	412.291831	1233.85366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.571	1	58.401	57.901	58.901	-0.1703								0	0	0	0.9619	1	22640	22640		0.094841	0	1		+		27533	17845	17487	17579	26428	26428					0.2460914208113536
RKILVAVILPI	11	Unmodified	_RKILVAVILPI_					0	0	0			REV__tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1	REV__tr|U7SVQ0|U7SVQ0_FUSNUChromatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01299PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	412.2903747558594	3	412.291831	1233.85366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.287	1	60.018	59.518	60.518	-0.26918								0	0	0	0.96111	1	22711	22711		0.50596	0	1		+		27534	17845	17487	17579	26429	26429					0.2460914208113536
RKIRKLVPS	9	Unmodified	_RKIRKLVPS_					0	0	0			REV__ZZZ3|p.N537Ifs*57|1|0.16|ENSG00000036549|chr1:77584551-77584551|T/-|frameshift_variant	REV__ZZZ3|p.N537Ifs*57|1|0.16|ENSG00000036549|chr1:77584551-77584551|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	366.2485046386719	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.869	1	59.598	59.098	60.098	-0.27156								0	0	0	0.76995	1	22541	22541		1.0715	0.80244	1		+		27535	18098	17488	17580	26430	26430					0.18001385521824886
RKIRKLVPS	9	Unmodified	_RKIRKLVPS_					0	0	0			REV__ZZZ3|p.N537Ifs*57|1|0.16|ENSG00000036549|chr1:77584551-77584551|T/-|frameshift_variant	REV__ZZZ3|p.N537Ifs*57|1|0.16|ENSG00000036549|chr1:77584551-77584551|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	366.2484436035156	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.132	1	59.861	59.361	60.361	-0.27156								0	0	0	0.76995	1	22648	22648		1.0715	0.80244	1		+		27536	18098	17488	17580	26431	26431					0.18001385521824886
RKKDTEKKEKE	11	Unmodified	_RKKDTEKKEKE_					0	0	0			REV__nc|ENSG00000188687|Q9BY07-7|SLC4A5	REV__nc|ENSG00000188687|Q9BY07-7|SLC4A5	MSMS	HCT116MG_D190212_S2	2	709.9030151367188	2	709.901722	1417.78889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.629	1	61.487	60.987	61.987	-0.14227								0	0	0	0.9598	1	23874	23874		1.1933	0	1		+		27537	13966	17489	17581	26432	26432					0.09670870746458604
RKKEKKKKKKT	11	Unmodified	_RKKEKKKKKKT_					0	0	0			REV__ENST00000406913.1_1_6:122001334-122001505:-|nuORF	REV__ENST00000406913.1_1_6:122001334-122001505:-|nuORF	MSMS	HCT116MG_D190212_S1	1	715.5308837890625	2	715.488102	1428.96165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.564	1	44.564	44.064	45.064	0								0	0	0	0.96192	1	16862	16862		0.30703	0.30703	1		+		27538	15416	17490	17582	26433	26433					0.2643290666437679
RKKGAKHV	8	Unmodified	_RKKGAKHV_					0	0	0			REV__ENST00000312033.3_1_9:117143444-117143519:-|nuORF	REV__ENST00000312033.3_1_9:117143444-117143519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	462.2981872558594	2	462.29851	922.582468	0.050856	2.3511E-05	0.37288	0.00017238	0.42374	0.00019589	462.2985956304252	60.909	2.171	60.909	60.698	62.869	0					84	41	3	0	0	0	0.88026	1	24200	24200		0	0	1	148410000	+		27539	14840	17491	17583	26434	26434					0.11808012219375996
RKKHRKMHRYR	11	Unmodified	_RKKHRKMHRYR_					0	0	0		ENST00000471418.5_1_3:114477768-114477897:-|nuORF	ENST00000471418.5_1_3:114477768-114477897:-|nuORF	ENST00000471418.5_1_3:114477768-114477897:-|nuORF	MSMS	HCT116MG_D190212_S1	1	798.6117553710938	2	798.468044	1594.92153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.113	1	40.113	39.613	40.613	0								0	0	0	0.96157	1	15067	15067		0.26902	0.26902	1				27540	8155	17492	17584	26435	26435					0.1478708151284991
RKKHRKMHRYR	11	Unmodified	_RKKHRKMHRYR_					0	0	0		ENST00000471418.5_1_3:114477768-114477897:-|nuORF	ENST00000471418.5_1_3:114477768-114477897:-|nuORF	ENST00000471418.5_1_3:114477768-114477897:-|nuORF	MSMS	HCT116MG_D190212_S1	1	798.4681396484375	2	798.468044	1594.92153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.191	1	40.191	39.691	40.691	0								0	0	0	0.96208	1	15099	15099		0	0	1				27541	8155	17492	17584	26436	26436					0.1478708151284991
RKKHRKMHRYR	11	Unmodified	_RKKHRKMHRYR_					0	0	0		ENST00000471418.5_1_3:114477768-114477897:-|nuORF	ENST00000471418.5_1_3:114477768-114477897:-|nuORF	ENST00000471418.5_1_3:114477768-114477897:-|nuORF	MSMS	HCT116MG_D190212_S1	1	798.4691772460938	2	798.468044	1594.92153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.787	1	40.787	40.287	41.287	0								0	0	0	0.96157	1	15340	15340		0.26902	0.26902	1				27542	8155	17492	17584	26437	26437					0.1478708151284991
RKKIIRRLYLK	11	Unmodified	_RKKIIRRLYLK_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S2	2	496.340087890625	3	496.340067	1485.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.4247	1	1.4115	0.91152	1.9115	-0.013221								0	0	0	0.96208	1	463	463		0	0	1				27543	4129	17493	17585	26438	26438					0.27481203280990485
RKKIIRRLYLK	11	Unmodified	_RKKIIRRLYLK_					0	0	0		nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.S4423Ffs*42|1|0.18|ENSG00000151835|chr13:23330610-23330611|-/G|frameshift_variant;ENSG00000151835|ENST00000382292|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	nc|ENSG00000151835|Q9NZJ4-2|SACS	MSMS	HCT116MG_D190212_S3	3	496.34014892578125	3	496.340067	1485.99837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.331	1	55.039	54.539	55.539	-0.2918								0	0	0	0.96208	1	20986	20986		0	0	1				27544	4129	17493	17585	26439	26439					0.27481203280990485
RKKKFHKKKKI	11	Unmodified	_RKKKFHKKKKI_					0	0	0			REV__ENSG00000115816|ENST00000234170|CEBPZ	REV__ENSG00000115816|ENST00000234170|CEBPZ	MSMS	HCT116MG_D190212_S1	1	735.0013427734375	2	735.00118	1467.98781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.519	1	51.519	51.019	52.019	0								0	0	0	0.96208	1	19686	19686		0	0	1		+		27545	11557	17494	17586	26440	26440					0.27253220626539587
RKKKGKKG	8	Unmodified	_RKKKGKKG_					0	0	0		ENST00000246139.9_1_X:71526667-71526790:-|nuORF	ENST00000246139.9_1_X:71526667-71526790:-|nuORF	ENST00000246139.9_1_X:71526667-71526790:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	465.3218994140625	2	465.321986	928.629418	0.095033	4.4221E-05	0.36725	0.00017089	0.46229	0.00021511	465.32208155703665	58.409	0.3542	58.409	58.261	58.615	0					11	6	2	0	0	0	0.88026	1	22547	22547		0	0	1	31874000			27546	6789	17495	17587	26441	26441					0.16224871770521077
RKKKKAMLLLM	11	Unmodified	_RKKKKAMLLLM_					0	0	0			REV__ENST00000244745.3_2_6:21596471-21596606:+|nuORF	REV__ENST00000244745.3_2_6:21596471-21596606:+|nuORF	MSMS	HCT116MG_D190212_S1	1	453.96124267578125	3	453.961211	1358.8618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.375	1	11.375	10.875	11.875	0								0	0	0	0.96208	1	3574	3574		0	0	1		+		27547	14569	17496	17588	26442	26442					0.19672629734600378
RKKKKKKKKRK	11	Unmodified	_RKKKKKKKKRK_					0	0	0			REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S3	3	495.3617248535156	3	495.363094	1483.06745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.049	1	60.803	60.303	61.303	-0.24588								0	0	0	0.96208	1	23291	23291		0	0	1		+		27548	15902	17497	17589	26443	26443					0.34524287300496326
RKKKKKKKTIK	11	Unmodified	_RKKKKKKKTIK_					0	0	0		ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	MSMS	HCT116MG_D190212_S3	3	707.511962890625	2	707.508838	1413.00312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.381	1	14.461	13.961	14.961	0.079683								0	0	0	0.96208	1	4624	4624		0	0	1				27549	7039	17498	17590	26444	26444					0.31314087423720594
RKKKKKKRKQ	10	Unmodified	_RKKKKKKRKQ_					0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MSMS	HCT116MG_D190212_S3	3	678.4727783203125	2	678.475329	1354.93611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.154	1	44.844	44.344	45.344	-0.30927								0	0	0	0.96937	1	16898	16898		0.40072	0	1				27550	1079	17499	17591	26445	26445					0.2728347693262094
RKKKKKQKNKK	11	Unmodified	_RKKKKKQKNKK_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;TCF25|p.S448Lfs*3|1|0.21|ENSG00000141002|chr16:89900755-89900755|T/-|frameshift_variant	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MSMS	HCT116MG_D190212_S1	1	721.494384765625	2	721.493719	1440.97288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.546	1	39.546	39.046	40.046	0								0	0	0	0.96208	1	14838	14838		0	0	1				27551	3700	17500	17592	26446	26446					0.27003728758541
RKKKRWSFCVP	11	Unmodified	_RKKKRWSFCVP_					0	0	0			REV__ENST00000461597.1_1_1:156260048-156262795:-|nuORF	REV__ENST00000461597.1_1_1:156260048-156262795:-|nuORF	MSMS	HCT116MG_D190212_S3	3	478.9433898925781	3	478.943208	1433.80779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.03	1	44.721	44.221	45.221	-0.30927								0	0	0	0.96111	1	16848	16848		0.50596	0	1		+		27552	15784	17501	17593	26447	26447					0.10824173627224809
RKKKVLKSK	9	Unmodified	_RKKKVLKSK_					0	0	0		nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	nc|ENSG00000146278|Q12796-2|PNRC1	MSMS	HCT116MG_D190212_S2	2	372.26446533203125	3	372.264276	1113.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.334	1	22.949	22.449	23.449	-0.3852								0	0	0	0.77025	1	8311	8311		0	0	1				27553	9493	17502	17594	26448	26448					0.21866245072988022
RKKKYIEIR	9	Unmodified	_RKKKYIEIR_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	HCT116MG_D190212_S3	3	411.93243408203125	3	411.931185	1232.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.846	1	13.92	13.42	14.42	0.074899								0	0	0	0.77019	1	4418	4418		0.23584	0	1				27554	6591	17503	17595	26449	26449					0.16465039722015717
RKKLFKKK	8	Unmodified	_RKKLFKKK_					0	0	0		ARFGEF2-SULF2|2|fusion;ARFGEF2-SULF2|1|fusion;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	ARFGEF2-SULF2|2|fusion	ARFGEF2-SULF2|2|fusion	MSMS	HCT116MG_D190212_S3	3	359.2539367675781	3	359.253599	1074.73897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.043	1	52.74	52.24	53.24	-0.30305								0	0	0	0.8837	1	20067	20067		0	0	1				27555	168	17504	17596	26450	26450					0.204588773898422
RKKLIGHK	8	Unmodified	_RKKLIGHK_					0	0	0			REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	REV__tr|U7T480|U7T480_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00375PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	490.3300476074219	2	490.329811	978.645068	0.32253	0.00015815	0.22011	0.00010793	0.54264	0.00026607	490.3298063526755	60.898	2.2113	60.75	60.373	62.584	-0.14852					107	43	3	0	0	0	0.88026	3	23985	23985;24216;24259		0	0	1	45893000	+		27556	17964	17505	17597	26451;26452;26453	26451					0.15489158287573446
RKKLIIIIVLV	11	Unmodified	_RKKLIIIIVLV_					0	0	0		ENSG00000166900|ENST00000337979|STX3	ENSG00000166900|ENST00000337979|STX3	ENSG00000166900|ENST00000337979|STX3	MSMS	HCT116MG_D190212_S2	2	654.4791870117188	2	654.478683	1306.94281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.321	1	58.151	57.651	58.651	-0.1703								0	0	0	0.96208	1	22537	22537		0	0	1				27557	4889	17506	17598	26454	26454					0.3016197704066599
RKKLKKVKLE	10	Unmodified	_RKKLKKVKLE_					0	0	0		nc|ENSG00000103852|Q5W5X9-2|TTC23	nc|ENSG00000103852|Q5W5X9-2|TTC23	nc|ENSG00000103852|Q5W5X9-2|TTC23	MSMS	HCT116MG_D190212_S1	1	423.96270751953125	3	423.962485	1268.86563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.596	1	11.596	11.096	12.096	0								0	0	0	0.97116	1	3663	3663		0	0	1				27558	9411	17507	17599	26455	26455					0.2419475882434199
RKKLRRKKRRQ	11	Unmodified	_RKKLRRKKRRQ_					0	0	0			REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF	REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF	MSMS	HCT116MG_D190212_S4	4	518.3535766601562	3	518.353481	1552.03861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.242	1	49.883	49.383	50.383	-0.35878								0	0	0	0.96192	1	18660	18660		0.08335	0.08335	1		+		27559	13164	17508	17600	26456	26456					0.28467562724108575
RKKMRRRRKRR	11	Unmodified	_RKKMRRRRKRR_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MSMS	HCT116MG_D190212_S1	1	543.023193359375	3	543.021848	1626.04372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.132	1	12.132	11.632	12.632	0								0	0	0	0.9619	1	3874	3874		0.094841	0	1				27560	6995	17509	17601	26457	26457					0.25573543315044844
RKKMRRRRKRR	11	Unmodified	_RKKMRRRRKRR_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MSMS	HCT116MG_D190212_S1	1	543.0228881835938	3	543.021848	1626.04372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.802	1	12.802	12.302	13.302	0								0	0	0	0.9619	1	4128	4128		0.094841	0	1				27561	6995	17509	17601	26458	26458					0.25573543315044844
RKKPGLGAP	9	Unmodified	_RKKPGLGAP_					0	0	0			REV__ENST00000494080.5_1_11:64109984-64120281:+|nuORF;REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENST00000494080.5_1_11:64109984-64120281:+|nuORF	MSMS	HCT116MG_D190212_S4	4	462.2911376953125	2	462.292894	922.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.861	1	30.497	29.997	30.997	-0.36416								0	0	0	0.76877	1	11176	11176		5.2307	0.47466	1		+		27562	15802;13185	17510	17602	26459	26459					0.10685190125229838
RKKQLKTEAAP	11	Unmodified	_RKKQLKTEAAP_					0	0	0		nc|ENSG00000110911|P49281-3|SLC11A2;nc|ENSG00000110911|P49281-4|SLC11A2	nc|ENSG00000110911|P49281-3|SLC11A2	nc|ENSG00000110911|P49281-3|SLC11A2	MSMS	HCT116MG_D190212_S4	4	635.3851318359375	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.973	1	51.628	51.128	52.128	-0.34538								0	0	0	0.95196	1	19360	19360		5.2969	2.0156	1				27563	9423	17511	17603	26460	26460					0.13284128134205275
RKKQRRLPR	9	Unmodified	_RKKQRRLPR_					0	0	0		LRRC66|p.E369Rfs*34|1|0.18|ENSG00000188993|chr4:51995917-51995918|-/T|frameshift_variant;LRRC66|p.S621Lfs*6|1|0.25|ENSG00000188993|chr4:51995161-51995161|A/-|frameshift_variant;ENSG00000188993|ENST00000682860|LRRC66	LRRC66|p.E369Rfs*34|1|0.18|ENSG00000188993|chr4:51995917-51995918|-/T|frameshift_variant	LRRC66|p.E369Rfs*34|1|0.18|ENSG00000188993|chr4:51995917-51995918|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	413.2740173339844	3	413.274057	1236.80034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.311	1	52.976	52.476	53.476	-0.33473								0	0	0	0.76995	1	19900	19900		1.0715	0	1				27564	6011	17512	17604	26461	26461					0.19141202141827307
RKKRFLFLYKK	11	Unmodified	_RKKRFLFLYKK_					0	0	0			REV__ENST00000342992.10_3_2:179536946-179538410:-|nuORF	REV__ENST00000342992.10_3_2:179536946-179538410:-|nuORF	MSMS	HCT116MG_D190212_S2	2	763.9878540039062	2	763.987738	1525.96092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.634	1	46.523	46.023	47.023	-0.11121								0	0	0	0.96208	1	17768	17768		0	0	1		+		27565	14989	17513	17605	26462	26462					0.21898112015355764
RKKRKKKKG	9	Unmodified	_RKKRKKKKG_					0	0	0			REV__ENST00000519694.1_1_7:27208459-27208531:+|nuORF	REV__ENST00000519694.1_1_7:27208459-27208531:+|nuORF	MSMS	HCT116MG_D190212_S4	4	386.2745361328125	3	386.275286	1155.80403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.343	1	42.969	42.469	43.469	-0.37433								0	0	0	0.77025	1	15931	15931		0	0	1		+		27566	16223	17514	17606	26463	26463					0.23235871915676398
RKKRKKKRQK	10	Unmodified	_RKKRKKKRQK_					0	0	0		ENST00000357337.10_1_13:77671591-77671720:-|nuORF	ENST00000357337.10_1_13:77671591-77671720:-|nuORF	ENST00000357337.10_1_13:77671591-77671720:-|nuORF	MSMS	HCT116MG_D190212_S3	3	692.47900390625	2	692.478403	1382.94225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.64	1	62.417	61.917	62.917	-0.22315								0	0	0	0.97116	1	23930	23930		0	0	1				27567	7308	17515	17607	26464	26464					0.2660999516415359
RKKRKKWAV	9	Unmodified	_RKKRKKWAV_					0	0	0			REV__ENST00000549884.5_1_12:56997341-56997377:-|nuORF	REV__ENST00000549884.5_1_12:56997341-56997377:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	600.395751953125	2	600.396016	1198.77748	0.74611	0.00044796	-1.1588	-0.00069576	-0.41272	-0.0002478	600.3950782717939	59.569	0.66513	59.409	59.285	59.95	-0.16012					20	13	2	0	0	0	0.76704	1	23067	23067		0.6015	0.20078	1	18514000	+		27568	16420	17516	17608	26465	26465					0.18604183024376653
RKKRKRLLIL	10	Unmodified	_RKKRKRLLIL_					0	0	0			REV__ENST00000216554.7_1_14:103805174-103805581:+|nuORF	REV__ENST00000216554.7_1_14:103805174-103805581:+|nuORF	MSMS	HCT116MG_D190212_S4	4	662.4755859375	2	662.474798	1322.93504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.342	1	48.98	48.48	49.48	-0.36275								0	0	0	0.97116	1	18299	18299		0	0	1		+		27569	14512	17517	17609	26466	26466					0.2864926256374929
RKKRKTKRRIL	11	Unmodified	_RKKRKTKRRIL_					0	0	0		ENST00000415149.6_1_3:107429416-107435478:+|nuORF	ENST00000415149.6_1_3:107429416-107435478:+|nuORF	ENST00000415149.6_1_3:107429416-107435478:+|nuORF	MSMS	HCT116MG_D190212_S1	1	495.01214599609375	3	495.010832	1482.01067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.217	1	11.217	10.717	11.717	0								0	0	0	0.96208	1	3510	3510		0	0	1				27570	7750	17518	17610	26467	26467					0.28894239744022343
RKKRRRSQRR	10	Unmodified	_RKKRRRSQRR_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MSMS	HCT116MG_D190212_S3	3	476.3065185546875	3	476.306531	1425.89776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.992	1	56.713	56.213	57.213	-0.27913								0	0	0	0.96937	1	21648	21648		0.13989	0	1				27571	5913	17519	17611	26468	26468					0.20184984070669998
RKKRRVHKKMR	11	Unmodified	_RKKRRVHKKMR_					0	0	0		EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant;ENSG00000129518|ENST00000250454|EAPP	EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant	EAPP|p.F278Sfs*4|1|0.34|ENSG00000129518|chr14:34516335-34516335|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	761.9896240234375	2	761.988612	1521.96267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.206	1	47.839	47.339	48.339	-0.36728								0	0	0	0.96149	1	17846	17846		0.30703	0.30703	1				27572	748	17520	17612	26469	26469					0.22256842552292255
RKKRTLLL	8	Unmodified	_RKKRTLLL_					0	0	0			REV__nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	REV__nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	MULTI-MSMS	HCT116MG_D190212_S2	2	514.3587646484375	2	514.358568	1026.70258	0.27478	0.00014133	0.15328	7.8842E-05	0.42806	0.00022018	514.3585012478693	60.911	1.8584	60.763	60.424	62.283	-0.14852					76	35	3	0	0	0	0.88026	3	23518	23518;23753;23988		0	0	1	38341000	+		27573	17160	17521	17613	26470;26471;26472	26470					0.1903000049314869
RKKWWQWRRRK	11	Unmodified	_RKKWWQWRRRK_					0	0	0			REV__ENST00000324344.8_1_16:20911624-20911678:-|nuORF	REV__ENST00000324344.8_1_16:20911624-20911678:-|nuORF	MSMS	HCT116MG_D190212_S4	4	572.0064086914062	3	572.006081	1712.99641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.343	1	31.964	31.464	32.464	-0.37924								0	0	0	0.96208	1	11776	11776		0	0	1		+		27574	14897	17522	17614	26473	26473					0.16843587315679542
RKLIFIKKK	9	Unmodified	_RKLIFIKKK_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MSMS	HCT116MG_D190212_S3	3	587.593994140625	2	587.413343	1172.81213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.225	1	14.305	13.805	14.805	0.079683								0	0	0	0.7701	1	4565	4565		0.52476	0	1				27575	5767	17523	17615	26474	26474					0.2326400611243571
RKLLLHKIKPV	11	Unmodified	_RKLLLHKIKPV_					0	0	0			REV__APC|p.N1455Ifs*18|1|0.15|ENSG00000134982|chr5:112839954-112839954|A/-|frameshift_variant	REV__APC|p.N1455Ifs*18|1|0.15|ENSG00000134982|chr5:112839954-112839954|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	672.9630126953125	2	672.963732	1343.91291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.288	1	41.912	41.412	42.412	-0.37565								0	0	0	0.96141	1	15537	15537		0.35063	0	1		+		27576	9961	17524	17616	26475	26475					0.25471038095292897
RKLLLLLKP	9	Unmodified	_RKLLLLLKP_					0	0	0		ENST00000416673.6_1_2:114369763-114384446:-|nuORF	ENST00000416673.6_1_2:114369763-114384446:-|nuORF	ENST00000416673.6_1_2:114369763-114384446:-|nuORF	MSMS	HCT116MG_D190212_S4	4	365.26580810546875	3	365.265505	1092.77469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.81	1	23.552	23.052	24.052	-0.25816								0	0	0	0.77025	1	8356	8356		0	0	1				27577	7759	17525	17617	26476	26476					0.23200914846870546
RKLLLYVLY	9	Unmodified	_RKLLLYVLY_					0	0	0			REV__DYM|p.F639Lfs*81|1|0.43|ENSG00000141627|chr18:49044148-49044148|A/-|frameshift_variant	REV__DYM|p.F639Lfs*81|1|0.43|ENSG00000141627|chr18:49044148-49044148|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	394.25408935546875	3	394.253265	1179.73797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.847	1	43.472	42.972	43.972	-0.37433								0	0	0	0.76991	1	16132	16132		1.1933	0.49568	1		+		27578	10423	17526	17618	26477	26477					0.15528618230291613
RKLLMFIK	8	Unmodified	_RKLLMFIK_					0	0	0		ENST00000312465.11_1_4:81209004-81209070:+|nuORF	ENST00000312465.11_1_4:81209004-81209070:+|nuORF	ENST00000312465.11_1_4:81209004-81209070:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	350.228271484375	3	350.228174	1047.66269	-0.0052013	-1.8217E-06	0.5823	0.00020394	0.5771	0.00020212	350.2283286970959	33.753	0.20839	33.56	33.482	33.691	-0.19297					5	3	2	0	0	0	0.84095	1	12560	12560		6.7232	0	1	25337000			27579	7065	17527	17619	26478	26478					0.1407673749820333
RKLLMFIK	8	Unmodified	_RKLLMFIK_					0	0	0		ENST00000312465.11_1_4:81209004-81209070:+|nuORF	ENST00000312465.11_1_4:81209004-81209070:+|nuORF	ENST00000312465.11_1_4:81209004-81209070:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		3	350.228174	1047.66269	0.017915	6.2743E-06	-0.0017907	-6.2714E-07	0.016124	5.6472E-06	350.2281459404131	33.465	0.20771	33.465	33.296	33.504	0	-0.047894	-0.00029458	NaN	6.7232	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6124900			27580	7065	17527	17619							0.1407673749820333
RKLLMFIK	8	Unmodified	_RKLLMFIK_					0	0	0		ENST00000312465.11_1_4:81209004-81209070:+|nuORF	ENST00000312465.11_1_4:81209004-81209070:+|nuORF	ENST00000312465.11_1_4:81209004-81209070:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	350.228174	1047.66269	-0.0052013	-1.8217E-06	0.5823	0.00020394	0.5771	0.00020212	350.2283286970959	33.753	0.20839	33.56	33.482	33.691	-0.19297	0.047894	0.00031912	NaN	6.7232	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25337000			27581	7065	17527	17619							0.1407673749820333
RKLLNLRLA	9	Unmodified	_RKLLNLRLA_					0	0	0			REV__ENSG00000143614|ENST00000368655|GATAD2B	REV__ENSG00000143614|ENST00000368655|GATAD2B	MSMS	HCT116MG_D190212_S2	2	366.24847412109375	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.471	1	59.311	58.811	59.811	-0.16012								0	0	0	0.76991	1	22997	22997		1.1933	0	1		+		27582	12400	17528	17620	26479	26479					0.18001385521824886
RKLLVLHVN	9	Unmodified	_RKLLVLHVN_					0	0	0		ENST00000439964.1_1_2:64871847-64873778:+|nuORF	ENST00000439964.1_1_2:64871847-64873778:+|nuORF	ENST00000439964.1_1_2:64871847-64873778:+|nuORF	MSMS	HCT116MG_D190212_S1	1	546.3560180664062	2	546.356025	1090.6975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.296	1	60.296	59.796	60.796	0								0	0	0	0.7701	1	23240	23240		0.52476	0	1				27583	7913	17529	17621	26480	26480					0.15577696630498394
RKLRLREVKQP	11	Unmodified	_RKLRLREVKQP_					0	0	0		nc|ENSG00000089091|Q9NVP4-3|DZANK1	nc|ENSG00000089091|Q9NVP4-3|DZANK1	nc|ENSG00000089091|Q9NVP4-3|DZANK1	MSMS	HCT116MG_D190212_S3	3	712.2301635742188	2	711.954427	1421.8943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.274	1	50.963	50.463	51.463	-0.31166								0	0	0	0.95954	1	19356	19356		1.3295	0.13619	1				27584	9397	17530	17622	26481	26481					0.20022876453435856
RKLSDHPRP	9	Unmodified	_RKLSDHPRP_					0	0	0		GRAP2|p.P191Rfs*49|1|0.33|ENSG00000100351|chr22:39968149-39968149|C/-|frameshift_variant	GRAP2|p.P191Rfs*49|1|0.33|ENSG00000100351|chr22:39968149-39968149|C/-|frameshift_variant	GRAP2|p.P191Rfs*49|1|0.33|ENSG00000100351|chr22:39968149-39968149|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	369.2117004394531	3	369.212351	1104.61522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.663	1	39.663	39.163	40.163	0								0	0	0	0.77001	1	14885	14885		0.86438	0	1				27585	9194	17531	17623	26482	26482					0.06710174551540149
RKLTGPKVV	9	Unmodified	_RKLTGPKVV_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;NLRC5|p.P816Rfs*30|1|0.28|ENSG00000140853|chr16:57031430-57031430|C/-|frameshift_variant;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;NLRC5|p.H1717Ifs*29|2|0.41|ENSG00000140853|chr16:57079112-57079112|C/-|frameshift_variant;nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MSMS	HCT116MG_D190212_S2	2	499.32989501953125	2	499.329476	996.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.829	1	58.663	58.163	59.163	-0.1653								0	0	0	0.76973	1	22745	22745		1.8442	1.0506	1				27586	3689;9478	17532	17624	26483	26483					0.14594318847855448
RKMHGDLMYLF	11	Unmodified	_RKMHGDLMYLF_					0	0	0		CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant;CLUH|p.K974Rfs*21|1|0.3|ENSG00000132361|chr17:2694178-2694178|G/-|frameshift_variant;CLUH|p.D1252Tfs*5|1|0.42|ENSG00000132361|chr17:2690771-2690771|T/-|frameshift_variant;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;CLUH|p.Q326Pfs*22|1|0.17|ENSG00000132361|chr17:2700760-2700761|-/G|frameshift_variant	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	705.8554077148438	2	705.854675	1409.6948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.605	1	33.22	32.72	33.72	-0.38426								0	0	0	0.9387	1	12239	12239		12.241	2.0901	1				27587	483	17533	17625	26484	26484					0.006337371190284102
RKMMKKMK	8	Unmodified	_RKMMKKMK_					0	0	0		ENST00000536889.1_1_X:102564780-102564858:-|nuORF	ENST00000536889.1_1_X:102564780-102564858:-|nuORF	ENST00000536889.1_1_X:102564780-102564858:-|nuORF	MSMS	HCT116MG_D190212_S1	1	540.814208984375	2	540.813767	1079.61298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.953	1	13.953	13.453	14.453	0								0	0	0	0.8837	1	4544	4544		0	0	1				27588	8667	17534	17626	26485	26485					0.07635963226243803
RKMPLVSTLLP	11	Unmodified	_RKMPLVSTLLP_					0	0	0		ENST00000425263.5_1_2:44547456-44547645:-|nuORF	ENST00000425263.5_1_2:44547456-44547645:-|nuORF	ENST00000425263.5_1_2:44547456-44547645:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	628.7849731445312	2	627.883758	1253.75296	0.45206	0.00028384	0.28852	0.00018116	0.74058	0.000465	627.885015656341	54.066	0.87495	53.877	53.377	54.252	-0.1894					34	16	3	0	0	0	0.74191	1	20814	20814		2.9952	0	1	28391000			27589	7812	17535	17627	26486	26486					0.13623742035997566
RKPDGGFAG	9	Unmodified	_RKPDGGFAG_					0	0	0			REV__nc|ENSG00000165246|Q8NFZ3|NLGN4Y	REV__nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-MSMS	HCT116MG_D190212_S1	1	452.73541259765625	2	452.735409	903.456264	0.13858	6.274E-05	0.17031	7.7106E-05	0.30889	0.00013985	452.7353437473328	18.212	0.62575	18.212	17.828	18.454	0					23	11	3	0	0	0	0.41514	1	6171	6171		21.747	1.293	1	9873400	+		27590	13044	17536	17628	26487	26487					0.0006746092343519194
RKPDGGFAG	9	Unmodified	_RKPDGGFAG_					0	0	0			REV__nc|ENSG00000165246|Q8NFZ3|NLGN4Y	REV__nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-MSMS	HCT116MG_D190212_S4	4	452.735107421875	2	452.735409	903.456264	0.16126	7.301E-05	0.047921	2.1695E-05	0.20919	9.4706E-05	452.73535174638323	18.149	1.141	17.974	17.48	18.621	-0.17501					61	21	4	0	0	0	0.32162	2	5937	5937;6177		28.487	6.7402	1	78861000	+		27591	13044	17536	17628	26488;26489	26488					0.0006746092343519194
RKPLILKRKKQ	11	Unmodified	_RKPLILKRKKQ_					0	0	0			REV__ENST00000472669.5_1_6:108365991-108372269:-|nuORF	REV__ENST00000472669.5_1_6:108365991-108372269:-|nuORF	MSMS	HCT116MG_D190212_S4	4	704.4863891601562	2	704.485363	1406.95617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.531	1	59.253	58.753	59.753	-0.27731								0	0	0	0.96149	1	22404	22404		0.30703	0.30703	1		+		27592	10875	17537	17629	26490	26490					0.2689722787258688
RKPPEKILL	9	Unmodified	_RKPPEKILL_					0	0	0			REV__nc|ENSG00000103313|O15553-1|MEFV	REV__nc|ENSG00000103313|O15553-1|MEFV	MSMS	HCT116MG_D190212_S1	1	547.3092041015625	2	547.358234	1092.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.772	1	58.772	58.272	59.272	0								0	0	0	0.7701	1	22649	22649		0.52476	0	1		+		27593	11187	17538	17630	26491	26491					0.15927161053423333
RKQEETTLCE	10	Unmodified	_RKQEETTLCE_					0	0	0		ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	ENSG00000250374|ENST00000503032|TRIM75	MSMS	HCT116MG_D190212_S1	1	412.8685302734375	3	412.86781	1235.5816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.405	1	11.405	10.905	11.905	0								0	0	0	0.96937	1	3587	3587		0.13989	0	1				27594	6578	17539	17631	26492	26492					-0.02676659793132785
RKQGKLPL	8	Unmodified	_RKQGKLPL_					0	0	0			REV__ENSG00000105793|ENST00000222511|GTPBP10	REV__ENSG00000105793|ENST00000222511|GTPBP10	MULTI-MSMS	HCT116MG_D190212_S1	1	470.2960205078125	2	470.308544	938.602535	0.16131	7.5864E-05	0.55872	0.00026277	0.72003	0.00033864	470.3086702223416	58.387	0.44253	58.387	58.173	58.615	0					14	8	3	0	0	0	0.8672	1	22461	22461		2.3027	0	1	50457000	+		27595	11275	17540	17632	26493	26493					0.13077763159321876
RKQGQRGRS	9	Unmodified	_RKQGQRGRS_					0	0	0		nc|ENSG00000186575|P35240-10|NF2	nc|ENSG00000186575|P35240-10|NF2	nc|ENSG00000186575|P35240-10|NF2	MSMS	HCT116MG_D190212_S2	2	358.2069396972656	3	358.2076	1071.60097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.097	1	25.735	25.235	26.235	-0.36228								0	0	0	0.76906	1	9427	9427		4.1895	0	1				27596	9582	17541	17633	26494	26494					0.06803522123277617
RKQLYGQY	8	Unmodified	_RKQLYGQY_					0	0	0			REV__MER65-int_dup826|chr19:41728927-41729274:+|5.36374670786269|0.0416066207026206|7.01|476.0|11|3|sense	REV__MER65-int_dup826|chr19:41728927-41729274:+|5.36374670786269|0.0416066207026206|7.01|476.0|11|3|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	528.2855834960938	2	528.285266	1054.55598	0.49965	0.00026396	0.48601	0.00025675	0.98566	0.00052071	528.2855355569176	25.009	0.2603	24.633	24.556	24.816	-0.37521					6	4	2	0	0	0	0.73076	1	9015	9015		19.439	0	1	19665000	+		27597	17019	17542	17634	26495	26495					0.0308827853737057
RKQVAGRRLR	10	Unmodified	_RKQVAGRRLR_					0	0	0		ENST00000446760.2_1:146374029-146374110:+|nuORF	ENST00000446760.2_1:146374029-146374110:+|nuORF	ENST00000446760.2_1:146374029-146374110:+|nuORF	MSMS	HCT116MG_D190212_S1	1	413.9339294433594	3	413.933811	1238.7796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.9	1	11.9	11.4	12.4	0								0	0	0	0.96937	1	3785	3785		0.13989	0	1				27598	7955	17543	17635	26496	26496					0.16976611762174798
RKQVLRRRRHT	11	Unmodified	_RKQVLRRRRHT_					0	0	0			REV__MYOF|p.R1025Q|1|0.22|ENSG00000138119|chr10:93359879-93359879|C/T|missense_variant	REV__MYOF|p.R1025Q|1|0.22|ENSG00000138119|chr10:93359879-93359879|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	502.3587341308594	3	502.650186	1504.92873	0.38516	0.0001936	-0.011016	-5.5371E-06	0.37415	0.00018806	502.65011627274674	56.352	0.30899	56.352	56.171	56.48	0					16	5	5	0	0	0	0.36631	1	21712	21712		0.073264	0.073264	1	206900000	+		27599	17053	17544	17636	26497	26497					0.19646137384916074
RKQVLRRRRHT	11	Unmodified	_RKQVLRRRRHT_					0	0	0			REV__MYOF|p.R1025Q|1|0.22|ENSG00000138119|chr10:93359879-93359879|C/T|missense_variant	REV__MYOF|p.R1025Q|1|0.22|ENSG00000138119|chr10:93359879-93359879|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	502.3587341308594	3	502.650186	1504.92873	0.36339	0.00018266	0.10267	5.1605E-05	0.46606	0.00023426	502.6502043377394	56.661	0.62039	56.661	56.428	57.049	0					32	11	4	0	0	0	0.36631	1	21712	21712		0.073264	0.073264	1	145820000	+		27600	17053	17544	17636	26498	26498					0.19646137384916074
RKRGRKKKLVF	11	Unmodified	_RKRGRKKKLVF_					0	0	0			REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF	REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF	MSMS	HCT116MG_D190212_S3	3	708.4734497070312	2	708.475329	1414.93611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.914	1	56.635	56.135	57.135	-0.27913								0	0	0	0.96141	1	21617	21617		0.35063	0	1		+		27601	12728	17545	17637	26499	26499					0.24523476932631638
RKRIKVRRRRA	11	Unmodified	_RKRIKVRRRRA_					0	0	0			REV__SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	REV__SRSF11|p.K357Sfs*62|1|0.12|ENSG00000116754|chr1:70249995-70249995|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	748.0083618164062	2	748.005651	1493.99675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.066	1	53.737	53.237	54.237	-0.32923								0	0	0	0.96208	1	20205	20205		0	0	1		+		27602	17594	17546	17638	26500	26500					0.2695100703558637
RKRKKKKK	8	Unmodified	_RKRKKKKK_					0	0	0			REV__PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant	REV__PHF20L1|p.K574Rfs*28|1|0.31|ENSG00000129292|chr8:132825341-132825341|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	367.2686462402344	3	367.268131	1098.78256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.127	1	59.972	59.472	60.472	-0.15441								0	0	0	0.8837	1	23264	23264		0.45834	0	1		+		27603	17412	17547	17639	26501	26501					0.23712486886961415
RKRKKYVI	8	Unmodified	_RKRKKYVI_					0	0	0		tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	tr|U7SV51|U7SV51_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01516PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	545.8645629882812	2	545.864018	1089.71348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.367	1	11.414	10.914	11.914	0.04739								0	0	0	0.8837	1	3486	3486		0.79363	0.79363	1				27604	18488	17548	17640	26502	26502					0.1722140286742615
RKRKRWLYWQP	11	Unmodified	_RKRKRWLYWQP_					0	0	0		ENSG00000175354|ENST00000309660|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	MSMS	HCT116MG_D190212_S3	3	539.8867797851562	3	539.647671	1615.92118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.823	1	50.509	50.009	51.009	-0.31381								0	0	0	0.96192	1	19175	19175		0.08335	0.08335	1				27605	5375	17549	17641	26503	26503					0.1378598506464641
RKRLLSRK	8	Unmodified	_RKRLLSRK_					0	0	0		nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	MSMS	HCT116MG_D190212_S1	1	352.90924072265625	3	352.908603	1055.70398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.509	1	11.509	11.009	12.009	0								0	0	0	0.8837	1	3629	3629		0.40072	0	1				27606	2140	17550	17642	26504	26504					0.17835634581911108
RKRLPPVKKSL	11	Unmodified	_RKRLPPVKKSL_					0	0	0		DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	441.2978210449219	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.874	1	10.601	10.101	11.101	-0.27365								0	0	0	0.96192	1	3469	3469		0.08335	0.08335	1				27607	642	17551	17643	26505	26505					0.22417277055842533
RKRLPPVKKSL	11	Unmodified	_RKRLPPVKKSL_					0	0	0		DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	441.2974853515625	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.529	1	11.247	10.747	11.747	-0.28186								0	0	0	0.96192	1	3720	3720		0.08335	0.08335	1				27608	642	17551	17643	26506	26506					0.22417277055842533
RKRLPPVKKSL	11	Unmodified	_RKRLPPVKKSL_					0	0	0		DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	441.2974548339844	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.381	1	12.444	11.944	12.944	0.06246								0	0	0	0.96192	1	3857	3857		0.08335	0.08335	1				27609	642	17551	17643	26507	26507					0.22417277055842533
RKRLPPVKKSL	11	Unmodified	_RKRLPPVKKSL_					0	0	0		DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	441.2976989746094	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.511	1	11.33	10.83	11.83	-0.18135								0	0	0	0.96192	1	3558	3558		0.08335	0.08335	1				27610	642	17551	17643	26508	26508					0.22417277055842533
RKRLPPVKKSL	11	Unmodified	_RKRLPPVKKSL_					0	0	0		DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	DCAF12|p.R44K|1|0.28|ENSG00000198876|chr9:34125225-34125225|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	441.2977600097656	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.605	1	12.436	11.936	12.936	-0.16903								0	0	0	0.96121	1	3920	3920		0.45452	0.35968	1				27611	642	17551	17643	26509	26509					0.22417277055842533
RKRLRLATK	9	Unmodified	_RKRLRLATK_					0	0	0			REV__tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	REV__tr|U7SGH6|U7SGH6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02206PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	381.2595520019531	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.07	1	58.904	58.404	59.404	-0.1653								0	0	0	0.77019	1	22842	22842		0.20686	0	1		+		27612	17669	17552	17644	26510	26510					0.1919959264469071
RKRPFVLKKK	10	Unmodified	_RKRPFVLKKK_					0	0	0		KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant;KAT6B|p.L1460*|1|0.36|ENSG00000156650|chr10:75029198-75029198|T/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF;KAT6B|p.R1133G|1|0.33|ENSG00000156650|chr10:75024982-75024982|A/G|missense_variant	KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	650.4401245117188	2	650.440424	1298.86629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0466	1	2.0223	1.5223	2.5223	-0.024288								0	0	0	0.97116	1	662	662		0	0	1				27613	4293	17553	17645	26511	26511					0.22881598264007152
RKRRARSKER	10	Unmodified	_RKRRARSKER_					0	0	0			REV__ENST00000328668.7_1_5:149682265-149682355:-|nuORF	REV__ENST00000328668.7_1_5:149682265-149682355:-|nuORF	MSMS	HCT116MG_D190212_S1	1	448.28057861328125	3	448.27987	1341.81778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.994	1	54.994	54.494	55.494	0								0	0	0	0.96337	1	21105	21105		1.7423	0.28716	1		+		27614	14917	17554	17646	26512	26512					0.1605449767682785
RKRRKFFC	8	Unmodified	_RKRRKFFC_					0	0	0			REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MSMS	HCT116MG_D190212_S1	1	380.8909606933594	3	380.890555	1139.64984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2469	1	1.2469	0.74691	1.7469	0								0	0	0	0.8837	1	382	382		0	0	1		+		27615	12026	17555	17647	26513	26513					0.08559719158688495
RKRRKFFC	8	Unmodified	_RKRRKFFC_					0	0	0			REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MSMS	HCT116MG_D190212_S1	1	380.890869140625	3	380.890555	1139.64984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1681	1	6.1681	5.6681	6.6681	0								0	0	0	0.8837	1	1857	1857		0	0	1		+		27616	12026	17555	17647	26514	26514					0.08559719158688495
RKRRKFFC	8	Unmodified	_RKRRKFFC_					0	0	0			REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MSMS	HCT116MG_D190212_S1	1	380.8909606933594	3	380.890555	1139.64984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.2104	1	8.2104	7.7104	8.7104	0								0	0	0	0.8837	1	2478	2478		0	0	1		+		27617	12026	17555	17647	26515	26515					0.08559719158688495
RKRRKFFC	8	Unmodified	_RKRRKFFC_					0	0	0			REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MSMS	HCT116MG_D190212_S4	4	380.8908386230469	3	380.890555	1139.64984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8873	1	2.6227	2.1227	3.1227	-0.26456								0	0	0	0.8837	1	887	887		0	0	1		+		27618	12026	17555	17647	26516	26516					0.08559719158688495
RKRRNRKKKKK	11	Unmodified	_RKRRNRKKKKK_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MSMS	HCT116MG_D190212_S1	1	763.5228881835938	2	763.521134	1525.02771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.504	1	39.504	39.004	40.004	0								0	0	0	0.96208	1	14821	14821		0	0	1				27619	1486	17556	17648	26517	26517					0.28620160349782964
RKRRRRCFRKR	11	Unmodified	_RKRRRRCFRKR_					0	0	0		ENST00000257626.11_2_7:77035403-77045687:-|nuORF	ENST00000257626.11_2_7:77035403-77045687:-|nuORF	ENST00000257626.11_2_7:77035403-77045687:-|nuORF	MSMS	HCT116MG_D190212_S1	1	809.4973754882812	2	809.50021	1616.98587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.419	1	44.419	43.919	44.919	0								0	0	0	0.96208	1	16804	16804		0	0	1				27620	6827	17557	17649	26518	26518					0.20205281389621632
RKRRRRCFRKR	11	Unmodified	_RKRRRRCFRKR_					0	0	0		ENST00000257626.11_2_7:77035403-77045687:-|nuORF	ENST00000257626.11_2_7:77035403-77045687:-|nuORF	ENST00000257626.11_2_7:77035403-77045687:-|nuORF	MSMS	HCT116MG_D190212_S3	3	540.0018310546875	3	540.002565	1616.98587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.856	1	51.547	51.047	52.047	-0.30927								0	0	0	0.96208	1	19589	19589		0	0	1				27621	6827	17557	17649	26519	26519					0.20205281389621632
RKRRRRRKPKQ	11	Unmodified	_RKRRRRRKPKQ_					0	0	0		LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant;ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3;LPIN3|p.G368Afs*52|1|0.31|ENSG00000132793|chr20:41350389-41350389|G/-|frameshift_variant	LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant	LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	783.0140991210938	2	783.014007	1564.01346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.133	1	9.8688	9.3688	10.369	-0.26472								0	0	0	0.96208	1	3191	3191		0	0	1				27622	3212	17558	17650	26520	26520					0.25401507921515076
RKRRRWNKKSG	11	Unmodified	_RKRRRWNKKSG_					0	0	0			REV__nc|ENSG00000137309|P17096-3|HMGA1	REV__nc|ENSG00000137309|P17096-3|HMGA1	MULTI-MSMS	HCT116MG_D190212_S2	2	491.2995910644531	3	491.299153	1470.87563	0.36442	0.00017904	0.41237	0.0002026	0.77679	0.00038164	491.29923111603676	56.82	0.52539	56.641	56.421	56.947	-0.17904					26	9	4	0	0	0	0.74191	1	21925	21925		0.094841	0	1	29761000	+		27623	17142	17559	17651	26521	26521					0.15902759602249716
RKRVLERKRRY	11	Unmodified	_RKRVLERKRRY_					0	0	0		nc|ENSG00000198300|Q9GZU2-3|PEG3;PEG3|p.T824Nfs*10|1|0.16|ENSG00000198300|chr19:56815956-56815971|TCCCTTCCTTCAGAGG/-|frameshift_variant;nc|ENSG00000198300|Q9GZU2-2|PEG3;ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3	nc|ENSG00000198300|Q9GZU2-3|PEG3	nc|ENSG00000198300|Q9GZU2-3|PEG3	MSMS	HCT116MG_D190212_S1	1	780.0524291992188	2	780.489499	1558.96445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.251	1	61.251	60.751	61.751	0								0	0	0	0.96208	1	23629	23629		0	0	1				27624	6223	17560	17652	26522	26522					0.20732174841896267
RKRYRPRRRK	10	Unmodified	_RKRYRPRRRK_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-3|BRWD3	REV__nc|ENSG00000165288|Q6RI45-3|BRWD3	MSMS	HCT116MG_D190212_S4	4	736.4689331054688	2	736.468901	1470.92325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.517	1	57.223	56.723	57.723	-0.29465								0	0	0	0.96937	1	21592	21592		0.40072	0	1		+		27625	13046	17561	17653	26523	26523					0.20662458593074007
RKTARKRRKK	10	Unmodified	_RKTARKRRKK_					0	0	0			REV__ENST00000420660.5_1_2:219134176-219134257:-|nuORF	REV__ENST00000420660.5_1_2:219134176-219134257:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.3004150390625	3	443.300494	1326.87965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.644	1	59.644	59.144	60.144	0								0	0	0	0.97116	1	22987	22987		0	0	1		+		27626	15520	17562	17654	26524	26524					0.2292884909595614
RKTRPLVVK	9	Unmodified	_RKTRPLVVK_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MSMS	HCT116MG_D190212_S2	2	366.2483215332031	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.18297	1	0.17903	-0.32097	0.67903	-0.0039395								0	0	0	0.77018	1	73	73		0.26902	0	1				27627	4151	17563	17655	26525	26525					0.18001385521824886
RKTRPLVVK	9	Unmodified	_RKTRPLVVK_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MSMS	HCT116MG_D190212_S2	2	366.2486877441406	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3034	1	4.2143	3.7143	4.7143	-0.089082								0	0	0	0.76995	1	1364	1364		1.0715	0	1				27628	4151	17563	17655	26526	26526					0.18001385521824886
RKTRPLVVK	9	Unmodified	_RKTRPLVVK_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MSMS	HCT116MG_D190212_S2	2	366.2484130859375	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.882	1	62.752	62.252	63.252	-0.12924								0	0	0	0.77018	1	24378	24378		0.26902	0	1				27629	4151	17563	17655	26527	26527					0.18001385521824886
RKTRPLVVK	9	Unmodified	_RKTRPLVVK_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MSMS	HCT116MG_D190212_S3	3	366.2485656738281	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.945	1	58.681	58.181	59.181	-0.26405								0	0	0	0.77018	1	22435	22435		0.26902	0	1				27630	4151	17563	17655	26528	26528					0.18001385521824886
RKTRPLVVK	9	Unmodified	_RKTRPLVVK_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MSMS	HCT116MG_D190212_S3	3	366.2483215332031	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.556	1	59.298	58.798	59.798	-0.25832								0	0	0	0.77018	1	22683	22683		0.26902	0	1				27631	4151	17563	17655	26529	26529					0.18001385521824886
RKVFLRLLPQL	11	Unmodified	_RKVFLRLLPQL_					0	0	0		nc|ENSG00000196811|P07510-2|CHRNG;ENSG00000196811|ENST00000651502|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	MSMS	HCT116MG_D190212_S2	2	692.1649169921875	2	691.953364	1381.89217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.519	1	28.189	27.689	28.689	-0.32987								0	0	0	0.95954	1	10406	10406		1.3295	0.13619	1				27632	6101	17564	17656	26530	26530					0.2165044771563771
RKVIRALIQ	9	Unmodified	_RKVIRALIQ_					0	0	0		NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant	NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant	NKTR|p.N670Ifs*43|1|0.14|ENSG00000114857|chr3:42637707-42637707|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	366.2488098144531	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.94	1	58.774	58.274	59.274	-0.1653								0	0	0	0.77018	1	22790	22790		0.26902	0	1				27633	9696	17565	17657	26531	26531					0.18001385521847624
RKVKIPKVV	9	Unmodified	_RKVKIPKVV_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MSMS	HCT116MG_D190212_S4	4	356.20684814453125	3	356.253488	1065.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.329	1	43.956	43.456	44.456	-0.37373								0	0	0	0.76995	1	16328	16328		1.0715	0	1		+		27634	14040	17566	17658	26532	26532					0.20839457669967487
RKVKKIKKLK	10	Unmodified	_RKVKKIKKLK_					0	0	0		ENSG00000117360|ENST00000324862|PRPF3;ENST00000467329.5_1_1:150316853-150325452:+|nuORF	ENSG00000117360|ENST00000324862|PRPF3	ENSG00000117360|ENST00000324862|PRPF3	MSMS	HCT116MG_D190212_S3	3	423.6470031738281	3	423.646608	1267.918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.308	1	12.37	11.87	12.87	0.06246								0	0	0	0.97116	1	3829	3829		0	0	1				27635	2571	17567	17659	26533	26533					0.2947534195793651
RKVLTPLP	8	Unmodified	_RKVLTPLP_					0	0	0		ENSG00000131061|ENST00000375200|ZNF341;nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENST00000493497.1_1_20:32376535-32379320:+|nuORF	ENSG00000131061|ENST00000375200|ZNF341	ENSG00000131061|ENST00000375200|ZNF341	MSMS	HCT116MG_D190212_S2	2	462.3063049316406	2	462.30547	922.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.362	1	60.208	59.708	60.708	-0.15441								0	0	0	0.8837	1	23360	23360		2.5775	0	1				27636	3125	17568	17660	26534	26534					0.13199244927807285
RKVTALVG	8	Unmodified	_RKVTALVG_					0	0	0			REV__ENSG00000180346|ENST00000603357|TIGD2	REV__ENSG00000180346|ENST00000603357|TIGD2	MSMS	HCT116MG_D190212_S3	3	422.2747802734375	2	422.27417	842.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.732	1	58.468	57.968	58.968	-0.26405								0	0	0	0.8837	1	22349	22349		0.79363	0	1		+		27637	13658	17569	17661	26535	26535					0.10622098859630569
RKVVPPEAA	9	Unmodified	_RKVVPPEAA_					0	0	0			REV__nc|ENSG00000073150|Q96RD6-2|PANX2	REV__nc|ENSG00000073150|Q96RD6-2|PANX2	MSMS	HCT116MG_D190212_S3	3	483.78839111328125	2	483.790184	965.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.272	1	56.993	56.493	57.493	-0.27913								0	0	0	0.76913	1	21761	21761		3.9444	1.0552	1		+		27638	10786	17570	17662	26536	26536					0.08165466542754984
RKWHKKDLKKA	11	Unmodified	_RKWHKKDLKKA_					0	0	0			REV__DPYD|p.L523Sfs*13|1|0.32|ENSG00000188641|chr1:97515899-97515899|G/-|frameshift_variant	REV__DPYD|p.L523Sfs*13|1|0.32|ENSG00000188641|chr1:97515899-97515899|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	719.4436645507812	2	719.443695	1436.87284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.749	1	33.749	33.249	34.249	0								0	0	0	0.95954	1	12500	12500		1.3295	0	1		+		27639	10408	17571	17663	26537	26537					0.17187491424715517
RKWMRRKMGKW	11	Unmodified	_RKWMRRKMGKW_					0	0	0		ENST00000490828.5_1_2:55184973-55193987:+|nuORF;nc|ENSG00000214595|Q6ZMW3-2|EML6	ENST00000490828.5_1_2:55184973-55193987:+|nuORF	ENST00000490828.5_1_2:55184973-55193987:+|nuORF	MSMS	HCT116MG_D190212_S2	2	521.6256713867188	3	521.627225	1561.85985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.203	1	34.028	33.528	34.528	-0.17512								0	0	0	0.95954	1	12717	12717		1.3296	0.87513	1				27640	8335	17572	17664	26538	26538					0.10139013769321537
RKWTGSRNIP	10	Unmodified	_RKWTGSRNIP_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MSMS	HCT116MG_D190212_S1	1	608.333251953125	2	607.841271	1213.66799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.745	1	36.745	36.245	37.245	0								0	0	0	0.85631	1	13707	13707		21.537	3.3906	1		+		27641	12076	17573	17665	26539	26539					0.06970132614378599
RKWTWWLSRMW	11	Unmodified	_RKWTWWLSRMW_					0	0	0		ENST00000439326.7_1_19:12175626-12184876:+|nuORF	ENST00000439326.7_1_19:12175626-12184876:+|nuORF	ENST00000439326.7_1_19:12175626-12184876:+|nuORF	MSMS	HCT116MG_D190212_S3	3	818.4249877929688	2	818.421905	1634.82926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.08	1	55.792	55.292	56.292	-0.28773								0	0	0	0.96194	1	21282	21282		0.26902	0.26902	1				27642	7909	17574	17666	26540	26540					0.03723558655929082
RKYLNKALSKK	11	Unmodified	_RKYLNKALSKK_					0	0	0		SYNE1|p.E4454K|1|0.51|ENSG00000131018|chr6:152331325-152331325|C/T|missense_variant	SYNE1|p.E4454K|1|0.51|ENSG00000131018|chr6:152331325-152331325|C/T|missense_variant	SYNE1|p.E4454K|1|0.51|ENSG00000131018|chr6:152331325-152331325|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	674.9240112304688	2	674.924803	1347.83505	0.63785	0.0004305	-0.93822	-0.00063323	-0.30037	-0.00020272	674.9239097892394	60.883	2.0171	60.883	60.387	62.404	0					62	38	2	0	0	0	0.74191	1	23840	23840		1.1933	0	1	21415000			27643	18249	17575	17667	26541	26541					0.17504980439230167
RKYTVLRLMIR	11	Unmodified	_RKYTVLRLMIR_					0	0	0		ENSG00000101265|ENST00000379400|RASSF2	ENSG00000101265|ENST00000379400|RASSF2	ENSG00000101265|ENST00000379400|RASSF2	MSMS	HCT116MG_D190212_S2	2	483.6344909667969	3	483.634263	1447.88096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.878	1	52.689	52.189	53.189	-0.18922								0	0	0	0.95996	1	20322	20322		1.1098	0.096179	1				27644	1769	17576	17668	26542	26542					0.17493302349816986
RLAADDFRV	9	Unmodified	_RLAADDFRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S1	1	531.7880249023438	2	531.788173	1061.56179	-0.44478	-0.00023653	0.30906	0.00016436	-0.13572	-7.2174E-05	531.7882358702759	38.098	0.416	38.098	37.916	38.332	0					19	7	5	0	0	0	0.0056012	1	14255	14255		132.38	64.299	1	116060000			27645	2271	17577	17669	26543	26543					0.03347377049021816
RLAADDFRV	9	Unmodified	_RLAADDFRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S1	1	354.86077880859375	3	354.861207	1061.56179	-0.84819	-0.00030099	0.078207	2.7753E-05	-0.76998	-0.00027324	354.8611037203997	38.101	0.25968	38.101	37.968	38.227	0					9	4	3	0	0	0	0.040027	1	14279	14279		64.927	36.693	1	21981000			27646	2271	17577	17669	26544	26544					0.03347377049021816
RLAADDFRV	9	Unmodified	_RLAADDFRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S2	2	531.78857421875	2	531.788173	1061.56179	0.26748	0.00014224	0.19023	0.00010116	0.45771	0.00024341	531.7882603319833	38.13	0.41327	38.037	37.857	38.27	-0.09301					20	7	4	0	0	0	0.0056012	1	14316	14316		132.38	64.299	1	367770000			27647	2271	17577	17669	26545	26545					0.03347377049021816
RLAADDFRV	9	Unmodified	_RLAADDFRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S2	2	354.8611755371094	3	354.861207	1061.56179	-0.32472	-0.00011523	0.26233	9.3091E-05	-0.062386	-2.2138E-05	354.86125203498	38.13	0.36189	38.037	37.908	38.27	-0.09301					9	6	2	0	0	0	0.0096523	1	14339	14339		94.909	52.953	1	57097000			27648	2271	17577	17669	26546	26546					0.03347377049021816
RLADEFGVAV	10	Unmodified	_RLADEFGVAV_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	HCT116MG_D190212_S1	1	538.79150390625	2	538.790381	1075.56621	0.5297	0.0002854	0.52046	0.00028042	1.0502	0.00056582	538.7906489822537	46.953	0.25902	46.953	46.803	47.062	0					6	4	2	0	0	0	0.61405	1	17850	17850		27.223	1.8239	1	10423000			27649	1055	17578	17670	26547	26547					0.03144841471953441
RLADEFGVAV	10	Unmodified	_RLADEFGVAV_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	HCT116MG_D190212_S2	2	538.8394775390625	2	538.790381	1075.56621	0.75398	0.00040624	0.16781	9.0415E-05	0.92179	0.00049665	538.7904780518978	47.07	0.30863	46.948	46.769	47.078	-0.12175					11	5	3	0	0	0	0.42802	1	17915	17915		40.239	5.8375	1	32783000			27650	1055	17578	17670	26548	26548					0.03144841471953441
RLADLEALKV	10	Unmodified	_RLADLEALKV_					0	0	0		ENST00000593017.1_1_19:12917826-12917955:+|nuORF;ENST00000590279.1_1_19:12917826-12918144:+|nuORF;ENST00000590121.1_1_19:12917502-12918326:+|nuORF;ENSG00000104889|ENST00000221486|RNASEH2A	ENST00000593017.1_1_19:12917826-12917955:+|nuORF	ENST00000593017.1_1_19:12917826-12917955:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	564.727783203125	2	564.342781	1126.67101	0.4733	0.0002671	0.44774	0.00025268	0.92104	0.00051978	564.3427660218579	45.299	0.20657	45.207	45.101	45.307	-0.092472					5	3	2	0	0	0	0.27467	1	17219	17219		34.222	5.1401	1	8446400			27651	1964	17579	17671	26549	26549					0.1127396294848495
RLAHYIDRV	9	Unmodified	_RLAHYIDRV_					0	0	0		LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2	LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	381.5523681640625	3	381.552485	1141.63563	-0.12698	-4.8448E-05	-0.029339	-1.1194E-05	-0.15631	-5.9642E-05	381.5524198290438	27.867	0.20441	27.525	27.398	27.602	-0.34201					5	3	2	0	0	0	0.086419	1	10164	10164		60.899	31.059	1	33089000			27652	5426	17580	17672	26550	26550					0.07047345211344691
RLAHYIDRV	9	Unmodified	_RLAHYIDRV_					0	0	0		LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2	LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	LMNB2|p.S544Lfs*23|1|0.45|ENSG00000176619|chr19:2431863-2431864|-/G|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		3	381.552485	1141.63563	0.097421	3.7171E-05	0.3605	0.00013755	0.45792	0.00017472	381.55275766164334	27.575	0.20802	27.387	27.257	27.465	-0.18847	-0.069279	0.00042587	NaN	60.899	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2971400			27653	5426	17580	17672							0.07047345211344691
RLAKRKLLKLL	11	Unmodified	_RLAKRKLLKLL_					0	0	0		ENST00000545279.5_1_5:135468581-135489282:+|nuORF	ENST00000545279.5_1_5:135468581-135489282:+|nuORF	ENST00000545279.5_1_5:135468581-135489282:+|nuORF	MSMS	HCT116MG_D190212_S4	4	451.32666015625	3	451.325646	1350.95511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.855	1	59.584	59.084	60.084	-0.27156								0	0	0	0.96208	1	22536	22536		0	0	1				27654	8717	17581	17673	26551	26551					0.29367013503701855
RLANERRSWG	10	Unmodified	_RLANERRSWG_					0	0	0		ENST00000272638.13_1_2:136499200-136499299:+|nuORF	ENST00000272638.13_1_2:136499200-136499299:+|nuORF	ENST00000272638.13_1_2:136499200-136499299:+|nuORF	MSMS	HCT116MG_D190212_S2	2	622.8536987304688	2	622.833977	1243.6534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.59	1	32.369	31.869	32.869	-0.22042								0	0	0	0.94107	1	12063	12063		6.7232	1.4263	1				27655	6923	17582	17674	26552	26552					0.04132060466235998
RLANRKRKRP	10	Unmodified	_RLANRKRKRP_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MSMS	HCT116MG_D190212_S2	2	432.28033447265625	3	432.281211	1293.8218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.018	1	37.925	37.425	38.425	-0.09301								0	0	0	0.96804	1	14270	14270		0.69767	0	1				27656	6692	17583	17675	26553	26553					0.1866458717054229
RLAQEGIYTL	10	Unmodified	_RLAQEGIYTL_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;nc|ENSG00000037474|Q08J23-3|NSUN2;ENST00000513888.5_1_5:6600041-6604993:-|nuORF	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-SECPEP	HCT116MG_D190212_S2	2	582.273193359375	2	582.324588	1162.63462	0.73165	0.00042606	-0.4227	-0.00024615	0.30896	0.00017991	582.3241657289911	44.613	0.1592	44.528	44.428	44.588	-0.084797					4	2	2	0	0	0	0.21022	1	16925	16925		61.602	13.853	1	16478000			27657	990	17584	17676	26554	26554					0.059810860518155096
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.S549Pfs*8|1|0.36|ENSG00000166508|chr7:100095422-100095422|G/-|frameshift_variant;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	HCT116MG_D190212_S2	2	550.8143920898438	2	550.81419	1099.61383	0.5796	0.00031925	-0.011399	-6.2786E-06	0.5682	0.00031297	550.8140624480601	31.37	0.20672	31.121	30.992	31.198	-0.24883					9	3	3	0	0	0	0.077982	1	11573	11573		62.573	37.173	1	35042000			27658	4862	17585	17677	26555	26555					0.06800540462791105
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.S549Pfs*8|1|0.36|ENSG00000166508|chr7:100095422-100095422|G/-|frameshift_variant;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MSMS	HCT116MG_D190212_S3	3	550.8146362304688	2	550.81419	1099.61383	0.36149	0.00019911	0.45448	0.00025033	0.81596	0.00044944	550.8143822211956	31.413	0.26117	31.143	30.96	31.221	-0.27028					9	4	3	0	0	0	0.24895	1	11484	11484		36.127	15.673	1	9913400			27659	4862	17585	17677	26556	26556					0.06800540462791105
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.S549Pfs*8|1|0.36|ENSG00000166508|chr7:100095422-100095422|G/-|frameshift_variant;ENSG00000166508|ENST00000303887|MCM7	nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-3|MCM7	MULTI-MATCH	HCT116MG_D190212_S1	1		2	550.81419	1099.61383	0.66322	0.00036531	0.14339	7.8979E-05	0.80661	0.00044429	550.8142162228661	30.997	0.20826	30.997	30.867	31.076	0	-0.089571	-0.00020703	NaN	62.573	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4783700			27660	4862	17585	17677							0.06800540462791105
RLARGGSL	8	Unmodified	_RLARGGSL_					0	0	0		ENSG00000284395|ENST00000640283|PERCC1	ENSG00000284395|ENST00000640283|PERCC1	ENSG00000284395|ENST00000640283|PERCC1	MSMS	HCT116MG_D190212_S4	4	415.2536315917969	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.443	1	59.166	58.666	59.666	-0.27731								0	0	0	0.8837	1	22369	22369		5.2307	0	1				27661	6707	17586	17678	26557	26557					0.07187757540009443
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	HCT116MG_D190212_S1	1	501.7835998535156	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.895	1	34.895	34.395	35.395	0								0	0	0	0.026669	1	12962	12962		85.642	19.185	1				27662	7666	17587	17679	26558	26558					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	HCT116MG_D190212_S3	3	501.782470703125	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.186	1	34.887	34.387	35.387	-0.29922								0	0	0	0.026669	1	12978	12978		85.642	33.373	1				27663	7666	17587	17679	26559	26559					0.04984554954910436
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S1	1	505.31219482421875	2	505.311284	1008.60801	0.11242	5.6805E-05	0.42744	0.00021599	0.53986	0.0002728	505.3116894101797	40.513	0.20732	40.513	40.332	40.539	0					7	3	3	0	0	0	0.31596	1	15238	15238		29.082	0.59474	1	15847000			27664	3710;1237	17588	17680	26560	26560					0.10405441951138528
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S2	2	505.311767578125	2	505.311284	1008.60801	0.62167	0.00031414	0.096093	4.8557E-05	0.71776	0.00036269	505.31135619242855	40.514	0.36129	40.445	40.261	40.622	-0.069626					12	6	3	0	0	0	0.027442	1	15282	15282		88.954	20.873	1	50184000			27665	3710;1237	17588	17680	26561	26561					0.10405441951138528
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	505.311284	1008.60801	0.11242	5.6805E-05	0.42744	0.00021599	0.53986	0.0002728	505.3116894101797	40.513	0.20732	40.513	40.332	40.539	0	0.034148	0.00030699	NaN	88.954	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15847000			27666	3710;1237	17588	17680							0.10405441951138528
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P08779;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;CON__Q99456;KRT10|p.R165W|1|0.16|ENSG00000186395|chr17:40822093-40822093|G/A|missense_variant;CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P08727;CON__P08730-1;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__P35527	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S1	1	532.80908203125	2	532.808574	1063.60259	0.47407	0.00025259	-0.094783	-5.0501E-05	0.37928	0.00020209	532.8087509909227	37.172	0.25906	37.172	36.99	37.249	0					9	4	3	0	0	0	0.0019891	1	13881	13881		187.14	83.789	1	59626000		+	27667	559;563;534;567;564	17589	17681	26562	26562					0.07333718368658992
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P08779;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;CON__Q99456;KRT10|p.R165W|1|0.16|ENSG00000186395|chr17:40822093-40822093|G/A|missense_variant;CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P08727;CON__P08730-1;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__P35527	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S2	2	532.80859375	2	532.808574	1063.60259	0.33684	0.00017947	0.27784	0.00014803	0.61467	0.0003275	532.8086654287661	37.206	0.36079	37.103	36.923	37.284	-0.10318					20	6	4	0	0	0	0.0019891	1	13926	13926		187.14	72.493	1	171900000		+	27668	559;563;534;567;564	17589	17681	26563	26563					0.07333718368658992
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P08779;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;CON__Q99456;KRT10|p.R165W|1|0.16|ENSG00000186395|chr17:40822093-40822093|G/A|missense_variant;CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P08727;CON__P08730-1;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__P35527	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S3	3	532.80859375	2	532.808574	1063.60259	0.54712	0.00029151	-0.064282	-3.425E-05	0.48284	0.00025726	532.8084553274005	37.357	0.26017	37.055	36.925	37.185	-0.30137					11	4	3	0	0	0	0.0010417	1	13840	13840		192.32	73.426	1	57027000		+	27669	559;563;534;567;564	17589	17681	26564	26564					0.07333718368658992
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P08779;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;CON__Q99456;KRT10|p.R165W|1|0.16|ENSG00000186395|chr17:40822093-40822093|G/A|missense_variant;CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7;CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P08727;CON__P08730-1;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__P35527	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S4	4	532.8087158203125	2	532.808574	1063.60259	0.31532	0.00016801	0.31992	0.00017045	0.63524	0.00033846	532.8089155968088	37.497	0.20617	37.113	36.977	37.183	-0.3839					7	3	3	0	0	0	0.012596	1	13781	13781		106.94	48.261	1	14004000		+	27670	559;563;534;567;564	17589	17681	26565	26565					0.07333718368658992
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	HCT116MG_D190212_S1	1	546.8118896484375	2	546.811648	1091.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.682	1	37.682	37.182	38.182	0								0	0	0	5.3183E-08	1	14086	14086		159.1	89.996	1				27671	2271	17590	17682	26566	26566					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S2	2	546.8113403320312	2	546.811648	1091.60874	0.24549	0.00013424	0.13502	7.3828E-05	0.3805	0.00020806	546.8116584951786	37.718	0.41163	37.615	37.486	37.898	-0.10318					20	7	4	0	0	0	0.0095327	1	14148	14148		114.5	49.262	1	384880000			27672	2271	17590	17682	26567	26567					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S3	3	546.8120727539062	2	546.811648	1091.60874	0.53697	0.00029362	-0.048329	-2.6427E-05	0.48864	0.00026719	546.8114688359642	37.911	0.35149	37.61	37.482	37.833	-0.30137					39	16	4	0	0	0	0.028026	1	14003	14003		88.364	23.129	1	105990000			27673	2271	17590	17682	26568	26568					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S4	4	546.8117065429688	2	546.811648	1091.60874	0.30411	0.00016629	0.31781	0.00017378	0.62192	0.00034007	546.8116863826999	38.07	0.3416	37.687	37.568	37.909	-0.38283					22	10	3	0	0	0	0.095731	1	13910	13910		59.052	5.2197	1	24406000			27674	2271	17590	17682	26569	26569					0.06660236600191638
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.Q183Tfs*5|1|0.35|ENSG00000113368|chr5:126805594-126805595|-/A|frameshift_variant	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MSMS	HCT116MG_D190212_S1	1	538.8267211914062	2	538.826766	1075.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.555	1	38.555	38.055	39.055	0								0	0	0	0.018972	1	14438	14438		93.166	35.444	1				27675	2383	17591	17683	26570	26570					0.1041859526535518
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.Q183Tfs*5|1|0.35|ENSG00000113368|chr5:126805594-126805595|-/A|frameshift_variant	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.8271484375	2	538.826766	1075.63898	0.34795	0.00018748	0.22756	0.00012262	0.57551	0.0003101	538.8268136336746	38.784	0.2084	38.482	38.352	38.561	-0.30137					6	3	2	0	0	0	0.43843	1	14407	14407		20.415	3.3016	1	6339100			27676	2383	17591	17683	26571	26571					0.1041859526535518
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	HCT116MG_D190212_S1	1	552.8307495117188	2	552.82984	1103.64513	0.24823	0.00013723	0.42482	0.00023485	0.67306	0.00037209	552.8300697668844	39.084	0.20798	39.084	38.955	39.163	0					10	3	4	0	0	0	0.0041644	1	14666	14666		148.27	73.339	1	51214000			27677	4464	17592	17684	26572	26572					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-SECPEP	HCT116MG_D190212_S3	3	553.2383422851562	2	552.82984	1103.64513	0.41368	0.00022869	1.038	0.00057386	1.4517	0.00080255	552.8298742520218	39.331	0.2676	39.03	38.872	39.14	-0.30137					10	4	3	0	0	0	0.17064	1	14595	14595		45.74	11.637	1	14776000			27678	4464	17592	17684	26573	26573					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MATCH	HCT116MG_D190212_S4	4		2	552.82984	1103.64513	0.51483	0.00028461	0.28977	0.00016019	0.8046	0.00044481	553.3314925392143	39.454	0.12838	39.074	38.971	39.1	-0.38055	0.011282	-0.00012253	NaN	148.27	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4400400			27679	4464	17592	17684							0.09745113496887825
RLCQLLRHQG	10	Unmodified	_RLCQLLRHQG_					0	0	0		FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant;FANCA|p.V925Rfs*18|1|0.2|ENSG00000187741|chr16:89764895-89764896|-/G|frameshift_variant;FANCA|p.G972Afs*17|1|0.37|ENSG00000187741|chr16:89758643-89758643|C/-|frameshift_variant;nc|ENSG00000187741|O15360-3|FANCA;ENSG00000187741|ENST00000389301|FANCA	FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant	FANCA|p.E800Gfs*16|1|0.13|ENSG00000187741|chr16:89769934-89769944|CATCCACCTCT/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	612.3414306640625	2	612.343123	1222.67169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.573	1	16.573	16.073	17.073	0								0	0	0	0.95507	1	5586	5586		3.5965	0.31518	1				27680	5955	17593	17685	26574	26574					0.06926479116555129
RLCTRMRWLIR	11	Unmodified	_RLCTRMRWLIR_					0	0	0			REV__ENST00000489411.1_1_3:44544069-44552124:-|nuORF	REV__ENST00000489411.1_1_3:44544069-44552124:-|nuORF	MSMS	HCT116MG_D190212_S3	3	752.4292602539062	2	752.429207	1502.84386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.66	1	10.7	10.2	11.2	0.039975								0	0	0	0.96208	1	3237	3237		0	0	1		+		27681	16021	17594	17686	26575	26575					0.11255307532451297
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant;nc|ENSG00000196628|P15884-7|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-11|TCF4;TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-15|TCF4	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	HCT116MG_D190212_S1	1	526.2984008789062	2	526.298373	1050.58219	0.2952	0.00015536	0.18354	9.6598E-05	0.47874	0.00025196	526.2984023329445	43.186	0.26123	43.186	43.003	43.264	0					10	4	3	0	0	0	0.069943	1	16315	16315		79.596	0	1	23207000			27682	3656	17595	17687	26576	26576					0.05892547708845086
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant;nc|ENSG00000196628|P15884-7|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-11|TCF4;TCF4|p.R401W|1|0.08|ENSG00000196628|chr18:55254646-55254646|G/A|missense_variant;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-15|TCF4	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	HCT116MG_D190212_S2	2	526.29833984375	2	526.298373	1050.58219	-0.11165	-5.8763E-05	-0.12237	-6.4402E-05	-0.23402	-0.00012316	526.2982605489591	43.196	0.25767	43.123	42.994	43.252	-0.073376					12	4	4	0	0	0	0.025331	1	16383	16383		110.67	0	1	67070000			27683	3656	17595	17687	26577	26577					0.05892547708845086
RLDDNIRTV	9	Unmodified	_RLDDNIRTV_					0	0	0		ENST00000575207.5_1_17:560762-617949:-|nuORF;VPS53|p.I194Dfs*17|1|0.4|ENSG00000141252|chr17:653319-653320|-/C|frameshift_variant;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	ENST00000575207.5_1_17:560762-617949:-|nuORF	ENST00000575207.5_1_17:560762-617949:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	551.3048095703125	2	551.304187	1100.59382	0.62027	0.00034196	0.25604	0.00014116	0.87631	0.00048311	551.3044051549343	29.46	0.20668	29.159	29.031	29.237	-0.30095					5	3	2	0	0	0	0.42398	1	10820	10820		27.088	8.7153	1	15632000			27684	3705	17596	17688	26578	26578					0.04754744732167637
RLDDPSGSNY	10	Unmodified	_RLDDPSGSNY_					0	0	0		ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	MULTI-MSMS	HCT116MG_D190212_S2	2	562.3181762695312	2	562.25436	1122.49417	0.38226	0.00021493	0.084476	4.7497E-05	0.46674	0.00026242	562.2540916812238	25.478	0.15715	25.109	24.978	25.135	-0.36914					4	2	2	0	0	0	0.69766	1	9129	9129		20.581	6.6749	1	2462200			27685	2181	17597	17689	26579	26579					-0.062181176724152465
RLDDVSNDV	9	Unmodified	_RLDDVSNDV_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	HCT116MG_D190212_S1	1	516.7521362304688	2	516.751453	1031.48835	0.47582	0.00024588	0.28113	0.00014527	0.75695	0.00039116	516.7516736561448	29.57	0.20868	29.57	29.425	29.633	0					6	3	2	0	0	0	0.1935	1	10833	10833		41.956	3.78	1	6223300			27686	4721	17598	17690	26580	26580					-0.02613216184090561
RLDDVSNDV	9	Unmodified	_RLDDVSNDV_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7515869140625	2	516.751453	1031.48835	0.22014	0.00011376	0.21563	0.00011143	0.43577	0.00022518	516.7515998958536	29.874	0.30984	29.573	29.392	29.702	-0.30095					9	5	2	0	0	0	0.034046	1	10967	10967		82.529	30.261	1	24542000			27687	4721	17598	17690	26581	26581					-0.02613216184090561
RLDEAAQRL	9	Unmodified	_RLDEAAQRL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MSMS	HCT116MG_D190212_S1	1	536.299072265625	2	536.298904	1070.58326	0.39701	0.00021292	0.21505	0.00011533	0.61206	0.00032825	536.2990490321405	27.152	0.46801	27.152	26.97	27.438	0					15	8	3	0	0	0	0.19011	1	9844	9844		42.312	14.684	1	14496000			27688	1342	17599	17691	26582	26582					0.050787620777555276
RLDEARQML	9	Unmodified	_RLDEARQML_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF;ENST00000577561.1_1_17:73214398-73221993:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MSMS	HCT116MG_D190212_S1	1	566.3009033203125	2	566.30059	1130.58663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.83	1	32.83	32.33	33.33	0								0	0	0	9.9565E-05	1	12128	12128		136.39	73.819	1				27689	2885	17600	17692	26583	26583					0.026556888601135142
RLDEARQML	9	Unmodified	_RLDEARQML_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF;ENST00000577561.1_1_17:73214398-73221993:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	HCT116MG_D190212_S2	2	566.3005981445312	2	566.30059	1130.58663	0.70197	0.00039753	0.35485	0.00020095	1.0568	0.00059848	566.3006962632677	33.062	0.25928	32.851	32.688	32.948	-0.21135					9	4	3	0	0	0	0.019537	1	12267	12267		96.936	51.236	1	75368000			27690	2885	17600	17692	26584	26584					0.026556888601135142
RLDELGGVYL	10	Unmodified	_RLDELGGVYL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S1	1	567.8115844726562	2	567.811313	1133.60807	0.31075	0.00017644	0.53895	0.00030602	0.8497	0.00048247	567.8115525390715	51.942	0.31747	51.942	51.756	52.073	0					13	5	3	0	0	0	0.012721	1	19841	19841		137.42	72.189	1	89536000			27691	2613	17601	17693	26585	26585					0.04661397160475644
RLDELGGVYL	10	Unmodified	_RLDELGGVYL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	567.811767578125	2	567.811313	1133.60807	0.65684	0.00037296	0.40922	0.00023236	1.0661	0.00060532	567.8115586897842	52.148	0.41293	51.96	51.78	52.193	-0.18725					22	7	4	0	0	0	0.029378	2	20026	20026;20066		103.42	47.242	1	246220000			27692	2613	17601	17693	26586;26587	26586					0.04661397160475644
RLDELGGVYL	10	Unmodified	_RLDELGGVYL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	1134.61474609375	1	1134.61535	1133.60807	0.837	0.00094968	-0.3491	-0.0003961	0.4879	0.00055358	1134.6149495141253	52.148	0.20639	51.96	51.832	52.038	-0.18725					6	3	2	0	0	0	0.029378	1	20041	20041		103.42	17.778	1	16980000			27693	2613	17601	17693	26588	26588					0.04661397160475644
RLDEVISKY	9	Unmodified	_RLDEVISKY_					0	0	0		DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant;DAXX|p.C629Lfs*29|1|0.36|ENSG00000204209|chr6:33319435-33319436|-/G|frameshift_variant;nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX	DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant	DAXX|p.C629Afs*16|1|0.36|ENSG00000204209|chr6:33319436-33319436|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	561.8112182617188	2	561.811313	1121.60807	0.45142	0.00025361	-0.35775	-0.00020099	0.09367	5.2625E-05	561.8110892864148	34.542	0.20805	34.542	34.389	34.597	0					8	3	3	0	0	0	0.16285	1	12838	12838		45.74	9.2337	1	7399200			27694	640	17602	17694	26589	26589					0.05213397160491695
RLDHKFDLMY	10	Unmodified	_RLDHKFDLMY_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000183785|Q9NY65-2|TUBA8;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;ENSG00000178462|ENST00000380419|TUBAL3;nc|ENSG00000178462|A6NHL2-2|TUBAL3;TUBAL3|p.A396D|1|0.48|ENSG00000178462|chr10:5393671-5393671|G/T|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S2	2	446.5608215332031	3	446.56054	1336.65979	0.2402	0.00010726	0.34707	0.00015499	0.58727	0.00026225	446.56055108606176	41.445	0.25594	41.377	41.242	41.498	-0.068199					10	4	3	0	0	0	0.47073	1	15682	15682		37.251	25.023	1	35708000			27695	1325	17603	17695	26590	26590					0.0049281758274446474
RLDHWIHSY	9	Unmodified	_RLDHWIHSY_					0	0	0		ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	MULTI-SECPEP	HCT116MG_D190212_S1	1	614.5631713867188	2	613.806897	1225.59924	0.57518	0.00035305	0.024488	1.5031E-05	0.59967	0.00036808	613.806899384299	34.805	0.20797	34.805	34.701	34.909	0					6	3	2	0	0	0	0.17321	1	12925	12925		36.506	12.486	1	6135300			27696	4494	17604	17696	26591	26591					-0.004535316853207405
RLDHWIHSY	9	Unmodified	_RLDHWIHSY_					0	0	0		ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	MULTI-MSMS	HCT116MG_D190212_S2	2	409.5401916503906	3	409.540357	1225.59924	-0.01198	-4.9064E-06	-0.31313	-0.00012824	-0.32511	-0.00013315	409.54029942595497	34.836	0.25937	34.678	34.502	34.761	-0.15834					11	4	3	0	0	0	9.7949E-05	1	12977	12977		166.77	139.68	1	97339000			27697	4494	17604	17696	26592	26592					-0.004535316853207405
RLDHWIHSY	9	Unmodified	_RLDHWIHSY_					0	0	0		ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	MULTI-MSMS	HCT116MG_D190212_S2	2	613.8068237304688	2	613.806897	1225.59924	0.56911	0.00034932	-0.43937	-0.00026969	0.12974	7.9635E-05	613.8065101824335	34.842	0.25937	34.683	34.502	34.761	-0.15834					8	4	2	0	0	0	0.0040527	1	12978	12978		149.91	120.07	1	66095000			27698	4494	17604	17696	26593	26593					-0.004535316853207405
RLDKSAHLFY	10	Unmodified	_RLDKSAHLFY_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	HCT116MG_D190212_S2	2	417.5623779296875	3	417.227779	1248.66151	0.26023	0.00010858	0.057204	2.3867E-05	0.31744	0.00013244	417.5622487908084	35.811	0.20532	35.669	35.541	35.746	-0.14245					5	3	2	0	0	0	0.50176	1	13399	13399		35.08	16.707	1	27617000			27699	2519	17605	17697	26594	26594					0.047121946629886224
RLDNLMSHL	9	Unmodified	_RLDNLMSHL_					0	0	0		ENST00000548225.1_1_12:56604079-56607800:-|nuORF;nc|ENSG00000181852|Q9H4P4-2|RNF41;RNF41|p.C291Lfs*2|1|0.06|ENSG00000181852|chr12:56206531-56206532|-/A|frameshift_variant;ENSG00000181852|ENST00000345093|RNF41	ENST00000548225.1_1_12:56604079-56607800:-|nuORF	ENST00000548225.1_1_12:56604079-56607800:-|nuORF	MSMS	HCT116MG_D190212_S1	1	366.86273193359375	3	366.862331	1097.56516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.377	1	10.377	9.8771	10.877	0								0	0	0	0.76902	1	3180	3180		2.4985	0	1				27700	5644	17606	17698	26595	26595					0.020283038313891666
RLDQGEPAP	9	Unmodified	_RLDQGEPAP_					0	0	0			REV__nc|ENSG00000272391|A8CG34|POM121C	REV__nc|ENSG00000272391|A8CG34|POM121C	MULTI-MSMS	HCT116MG_D190212_S3	3	491.7517395019531	2	491.751256	981.487959	0.042597	2.0947E-05	0.71414	0.00035118	0.75674	0.00037213	491.75162089598626	20.393	0.41653	20.442	20.259	20.676	0.048107					10	7	2	0	0	0	0.24895	1	7084	7084		36.127	7.0454	1	2499900	+		27701	17317	17607	17699	26596	26596					-0.0035259111327832215
RLDSNNHLY	9	Unmodified	_RLDSNNHLY_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000507805.5_1_5:94852367-94852451:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	HCT116MG_D190212_S2	2	566.2799072265625	2	566.280712	1130.54687	0.61803	0.00034998	-1.957	-0.0011082	-1.3389	-0.00075822	566.2792522437694	27.197	0.26037	26.845	26.766	27.026	-0.35254					5	4	2	0	0	0	0.16566	1	9901	9901		45.7	13.246	1	14028000			27702	6250	17608	17700	26597	26597					-0.013181148189460146
RLDSTGVNV	9	Unmodified	_RLDSTGVNV_					0	0	0		nc|ENSG00000196550|Q5TYM5-2|FAM72A;ENSG00000263513|ENST00000584486|FAM72C;ENSG00000215784|ENST00000400889|FAM72D;ENSG00000196550|ENST00000367128|FAM72A	nc|ENSG00000196550|Q5TYM5-2|FAM72A	nc|ENSG00000196550|Q5TYM5-2|FAM72A	MULTI-MSMS	HCT116MG_D190212_S1	1	480.7586669921875	2	480.759081	959.503609	0.18766	9.022E-05	0.014458	6.9509E-06	0.20212	9.7171E-05	480.7589707657876	29.659	0.25968	29.659	29.529	29.789	0					6	4	2	0	0	0	0.22946	1	10873	10873		38.176	9.6887	1	8023100			27703	6084	17609	17701	26598	26598					0.022236954037680334
RLDSTGVNV	9	Unmodified	_RLDSTGVNV_					0	0	0		nc|ENSG00000196550|Q5TYM5-2|FAM72A;ENSG00000263513|ENST00000584486|FAM72C;ENSG00000215784|ENST00000400889|FAM72D;ENSG00000196550|ENST00000367128|FAM72A	nc|ENSG00000196550|Q5TYM5-2|FAM72A	nc|ENSG00000196550|Q5TYM5-2|FAM72A	MSMS	HCT116MG_D190212_S2	2	480.75933837890625	2	480.759081	959.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.109	1	29.825	29.325	30.325	-0.28453								0	0	0	0.16977	1	11056	11056		49.554	3.5333	1				27704	6084	17609	17701	26599	26599					0.022236954037680334
RLDWPVRTL	9	Unmodified	_RLDWPVRTL_					0	0	0		nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3;ENST00000358442.4_1_5:177309478-177348133:+|nuORF;ENST00000511074.1_1_5:177305805-177309842:+|nuORF;ENST00000507037.5_1_5:177305712-177377317:+|nuORF	nc|ENSG00000051596|Q96J01-2|THOC3	nc|ENSG00000051596|Q96J01-2|THOC3	MULTI-SECPEP	HCT116MG_D190212_S2	2	578.8380126953125	2	578.33529	1154.65603	0.6315	0.00036522	1.2382	0.00071612	1.8698	0.0010813	578.837424341606	47.145	0.31068	47.023	46.922	47.233	-0.12175					6	5	2	0	0	0	0.21264	1	18007	18007		20.581	0	1	12242000			27705	1058	17610	17702	26600	26600					0.08488515871181335
RLEDKIERI	9	Unmodified	_RLEDKIERI_					0	0	0			REV__tr|U7T561|U7T561_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00450PE=4SV=1	REV__tr|U7T561|U7T561_FUSNUN-acetylmuramoyl-L-alanineamidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00450PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	391.2311706542969	3	391.2313	1170.67207	-0.088714	-3.4708E-05	0.079369	3.1051E-05	-0.0093451	-3.6561E-06	391.23113197071575	31.727	0.26075	31.727	31.596	31.857	0					8	4	3	0	0	0	0.35128	1	11698	11698		18.373	3.9677	1	10893000	+		27706	17979	17611	17703	26601	26601					0.09356177317431502
RLEDQVIGV	9	Unmodified	_RLEDQVIGV_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MSMS	HCT116MG_D190212_S2	2	514.7903442382812	2	514.790381	1027.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.897	1	39.824	39.324	40.324	-0.072838								0	0	0	0.019309	1	15030	15030		92.653	26.197	1				27707	1112	17612	17704	26602	26602					0.053528414719721695
RLEDQVIGV	9	Unmodified	_RLEDQVIGV_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;QSER1|p.E632Kfs*8|2|0.26|ENSG00000060749|chr11:32933532-32933532|A/-|frameshift_variant	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MSMS	HCT116MG_D190212_S3	3	514.7910766601562	2	514.790381	1027.56621	0.046492	2.3934E-05	0.51961	0.00026749	0.5661	0.00029142	514.7907009717132	40.074	0.23702	39.773	39.666	39.903	-0.30137					6	4	2	0	0	0	0.24534	1	14894	14894		36.506	3.7205	1	6587900			27708	1112	17612	17704	26603	26603					0.053528414719721695
RLEENVLGV	9	Unmodified	_RLEENVLGV_					0	0	0			REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	514.7905883789062	2	514.790381	1027.56621	0.19242	9.9055E-05	-0.098281	-5.0594E-05	0.094136	4.8461E-05	514.7903510210994	39.839	0.20753	39.839	39.709	39.917	0					6	3	2	0	0	0	0.077982	1	14961	14961		62.573	0	1	12320000	+		27709	14418	17613	17705	26604	26604					0.053528414719721695
RLEENVLGV	9	Unmodified	_RLEENVLGV_					0	0	0			REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	REV__EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	514.790381	1027.56621	0.19242	9.9055E-05	-0.098281	-5.0594E-05	0.094136	4.8461E-05	514.7903510210994	39.839	0.20753	39.839	39.709	39.917	0	0.032857	-0.00035044	NaN	62.573	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12320000	+		27710	14418	17613	17705							0.053528414719721695
RLEKKRIKKRK	11	Unmodified	_RLEKKRIKKRK_					0	0	0		ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	MSMS	HCT116MG_D190212_S1	1	741.7235717773438	2	742.006993	1481.99943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.503	1	51.503	51.003	52.003	0								0	0	0	0.95954	1	19679	19679		1.3295	0	1				27711	6290	17614	17706	26605	26605					0.2777141764981934
RLEKKRIKKRK	11	Unmodified	_RLEKKRIKKRK_					0	0	0		ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	MSMS	HCT116MG_D190212_S1	1	742.00146484375	2	742.006993	1481.99943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.608	1	51.608	51.108	52.108	0								0	0	0	0.95954	1	19722	19722		1.3295	0	1				27712	6290	17614	17706	26606	26606					0.2777141764981934
RLFDDVPQV	9	Unmodified	_RLFDDVPQV_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000438961.1_1_7:766900-790557:+|nuORF	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	HCT116MG_D190212_S2	2	545.316650390625	2	544.790381	1087.56621	0.70318	0.00038308	-0.1889	-0.00010291	0.51428	0.00028017	544.7901519583304	47.484	0.30988	47.362	47.233	47.543	-0.12175					6	5	2	0	0	0	0.43775	1	18068	18068		20.454	7.9221	1	9630600			27713	4721	17615	17707	26607	26607					0.025928414719373905
RLFDEPQLA	9	Unmodified	_RLFDEPQLA_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;BTBD1|p.K388Sfs*28|1|0.19|ENSG00000064726|chr15:83018834-83018834|T/-|frameshift_variant;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	HCT116MG_D190212_S1	1	544.789794921875	2	544.790381	1087.56621	0.39534	0.00021538	0.04084	2.2249E-05	0.43619	0.00023763	544.7902745731346	43.867	0.83309	43.867	43.524	44.357	0					33	15	3	0	0	0	0.020353	1	16543	16543		96.111	46.557	1	39015000			27714	285	17616	17708	26608	26608					0.025928414719373905
RLFDEPQLA	9	Unmodified	_RLFDEPQLA_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;BTBD1|p.K388Sfs*28|1|0.19|ENSG00000064726|chr15:83018834-83018834|T/-|frameshift_variant;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	HCT116MG_D190212_S2	2	544.7904663085938	2	544.790381	1087.56621	0.5179	0.00028215	-0.10455	-5.6959E-05	0.41335	0.00022519	544.7901844337198	43.903	0.77576	43.825	43.505	44.281	-0.078373					35	14	3	0	0	0	0.020353	1	16607	16607		96.111	46.557	1	103030000			27715	285	17616	17708	26609	26609					0.025928414719373905
RLFDEPQLASL	11	Unmodified	_RLFDEPQLASL_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;BTBD1|p.K388Sfs*28|1|0.19|ENSG00000064726|chr15:83018834-83018834|T/-|frameshift_variant;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	HCT116MG_D190212_S1	1	644.8497314453125	2	644.848427	1287.6823	0.74823	0.00048249	0.57586	0.00037134	1.3241	0.00085384	644.8489024109371	52.55	0.41012	52.55	52.28	52.69	0					10	7	2	0	0	0	0.037491	1	20100	20100		121.93	72.402	1	23977000			27716	285	17617	17709	26610	26610					0.04996740251999654
RLFDEPQLASL	11	Unmodified	_RLFDEPQLASL_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;BTBD1|p.K388Sfs*28|1|0.19|ENSG00000064726|chr15:83018834-83018834|T/-|frameshift_variant;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	HCT116MG_D190212_S2	2	645.3502197265625	2	644.848427	1287.6823	0.64094	0.00041331	-0.079565	-5.1307E-05	0.56138	0.000362	644.8482882556863	52.802	0.62071	52.613	52.346	52.966	-0.18856					32	11	4	0	0	0	0.001334	2	20261	20261;20263		154.04	96.315	1	57337000			27717	285	17617	17709	26611;26612	26611					0.04996740251999654
RLFFFIRE	8	Unmodified	_RLFFFIRE_					0	0	0		ENST00000177742.7_1_16:1822507-1822845:-|nuORF	ENST00000177742.7_1_16:1822507-1822845:-|nuORF	ENST00000177742.7_1_16:1822507-1822845:-|nuORF	MSMS	HCT116MG_D190212_S3	3	564.32275390625	2	564.321651	1126.62875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.811	1	35.51	35.01	36.01	-0.30042								0	0	0	0.8837	1	13210	13210		2.3027	0	1				27718	6720	17618	17710	26613	26613					0.07050032330812428
RLFRMLRIF	9	Unmodified	_RLFRMLRIF_					0	0	0		SCN7A|p.L606S|1|0.3|ENSG00000136546|chr2:166441736-166441736|A/G|missense_variant;SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant;SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant;ENSG00000136546|ENST00000643258|SCN7A	SCN7A|p.L606S|1|0.3|ENSG00000136546|chr2:166441736-166441736|A/G|missense_variant	SCN7A|p.L606S|1|0.3|ENSG00000136546|chr2:166441736-166441736|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	417.9218444824219	3	417.921744	1250.7434	0.063083	2.6364E-05	0.51612	0.0002157	0.57921	0.00024206	417.92194922161457	55.121	0.15271	55.121	55.044	55.197	0					4	2	2	0	0	0	0.77229	1	21187	21187		0.23584	0	1	47163000			27719	3423	17619	17711	26614	26614					0.1280601854109591
RLFRMLRIF	9	Unmodified	_RLFRMLRIF_					0	0	0		SCN7A|p.L606S|1|0.3|ENSG00000136546|chr2:166441736-166441736|A/G|missense_variant;SCN7A|p.D959Lfs*11|1|0.11|ENSG00000136546|chr2:166423411-166423412|-/AA|frameshift_variant;SCN7A|p.Y1475Ifs*11|1|0.43|ENSG00000136546|chr2:166406206-166406206|A/-|frameshift_variant;ENSG00000136546|ENST00000643258|SCN7A	SCN7A|p.L606S|1|0.3|ENSG00000136546|chr2:166441736-166441736|A/G|missense_variant	SCN7A|p.L606S|1|0.3|ENSG00000136546|chr2:166441736-166441736|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	417.9219970703125	3	417.921744	1250.7434	0.060991	2.5489E-05	0.9561	0.00039958	1.0171	0.00042507	417.921971515564	55.799	0.41313	55.613	55.38	55.793	-0.18565					17	7	3	0	0	0	0.76028	1	21549	21549		1.0715	0	1	23030000			27720	3423	17619	17711	26615	26615					0.1280601854109591
RLFRTKVWELY	11	Unmodified	_RLFRTKVWELY_					0	0	0		ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	MULTI-SECPEP	HCT116MG_D190212_S1	1	379.24359130859375	4	378.468681	1509.84562	-0.11599	-4.39E-05	-0.72642	-0.00027493	-0.84241	-0.00031883	378.46838120436337	22.433	0.57428	22.433	21.959	22.533	0					16	10	2	0	0	0	0.36618	1	7853	7853		0.45452	0	1	9136900			27721	1729	17620	17712	26616	26616					0.11108963093715829
RLFSSIVTV	9	Unmodified	_RLFSSIVTV_					0	0	0		ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	MSMS	HCT116MG_D190212_S1	1	511.3056945800781	2	511.305667	1020.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.101	1	51.101	50.601	51.601	0								0	0	0	0.077161	1	19515	19515		62.573	10.304	1				27722	4912	17621	17713	26617	26617					0.08730619857010424
RLGDKILQV	9	Unmodified	_RLGDKILQV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	HCT116MG_D190212_S2	2	521.8258056640625	2	521.324391	1040.63423	0.17819	9.2894E-05	0.20359	0.00010614	0.38178	0.00019903	521.3245170198396	39.942	0.36245	39.869	39.687	40.05	-0.072838					16	6	4	0	0	0	0.034046	1	15054	15054		82.529	2.933	1	90841000			27723	1166	17622	17714	26618	26618					0.11553711122587629
RLGEAEGLMKV	11	Unmodified	_RLGEAEGLMKV_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	HCT116MG_D190212_S2	2	601.8318481445312	2	601.831723	1201.64889	0.61331	0.00036911	0.0044044	2.6507E-06	0.61771	0.00037176	601.8316024169206	38.639	0.3205	38.554	38.33	38.65	-0.084621					8	5	2	0	0	0	0.20607	1	14531	14531		74.772	20.939	1	24253000			27724	4338	17623	17715	26619	26619					0.056134152084496236
RLGEAEGLMKV	11	Unmodified	_RLGEAEGLMKV_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MATCH	HCT116MG_D190212_S3	3		2	601.831723	1201.64889	0.47633	0.00028667	1.0988	0.00066127	1.5751	0.00094794	601.8316946880718	38.863	0.20801	38.562	38.456	38.664	-0.30137	0.0038609	0.0011961	NaN	74.772	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2388200			27725	4338	17623	17715							0.056134152084496236
RLGEVANEV	9	Unmodified	_RLGEVANEV_					0	0	0		ENSG00000142530|ENST00000600100|GARIN5A;nc|ENSG00000142530|Q6IPT2-2|GARIN5A;ENST00000600330.1_1_19:50978580-50979281:-|nuORF	ENSG00000142530|ENST00000600100|GARIN5A	ENSG00000142530|ENST00000600100|GARIN5A	MULTI-MSMS	HCT116MG_D190212_S1	1	493.7672119140625	2	493.766906	985.519259	0.49824	0.00024602	0.051475	2.5416E-05	0.54972	0.00027143	493.7669150709207	31.05	0.31247	31.05	30.867	31.18	0					8	5	2	0	0	0	0.12205	1	11429	11429		53.833	15.859	1	8961200			27726	3760	17624	17716	26620	26620					0.025919819208070294
RLGEVANEV	9	Unmodified	_RLGEVANEV_					0	0	0		ENSG00000142530|ENST00000600100|GARIN5A;nc|ENSG00000142530|Q6IPT2-2|GARIN5A;ENST00000600330.1_1_19:50978580-50979281:-|nuORF	ENSG00000142530|ENST00000600100|GARIN5A	ENSG00000142530|ENST00000600100|GARIN5A	MSMS	HCT116MG_D190212_S2	2	493.76702880859375	2	493.766906	985.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.333	1	31.084	30.584	31.584	-0.24883								0	0	0	0.1107	1	11554	11554		53.833	11.738	1				27727	3760	17624	17716	26621	26621					0.025919819208070294
RLGRLRHRRQQ	11	Unmodified	_RLGRLRHRRQQ_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	738.95068359375	2	738.448166	1474.88178	0.83199	0.00061438	0.20503	0.0001514	1.037	0.00076578	738.4481695550694	52.578	1.7013	52.578	51.451	53.153	0					74	32	3	0	0	0	0.74191	1	19874	19874		0.30703	0	1	354360000	+		27728	13770	17625	17717	26622	26622					0.1633327783376899
RLGRLRHRRQQ	11	Unmodified	_RLGRLRHRRQQ_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	492.6346130371094	3	492.634536	1474.88178	0.44862	0.000221	0.16515	8.136E-05	0.61377	0.00030236	492.6345306457638	53.84	2.6071	53.84	52.742	55.349	0					165	50	4	0	0	0	0.74191	1	20362	20362		0.08335	0	1	1040799999.9999999	+		27729	13770	17625	17717	26623	26623					0.1633327783376899
RLGVISKV	8	Unmodified	_RLGVISKV_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant;HECTD1|p.R672Kfs*9|1|0.35|ENSG00000092148|chr14:31150141-31150142|-/C|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	HCT116MG_D190212_S2	2	436.2898254394531	2	436.28982	870.565087	0.18672	8.1465E-05	-0.13914	-6.0705E-05	0.047584	2.076E-05	436.2895523707026	31.267	0.25814	31	30.87	31.128	-0.26704					7	4	2	0	0	0	0.060005	1	11544	11544		112.59	23.69	1	15460000			27730	1575	17626	17718	26624	26624					0.12462671893706556
RLGWLHRLGRH	11	Unmodified	_RLGWLHRLGRH_					0	0	0			REV__ENST00000445817.1_1_1:227618561-227618687:+|nuORF	REV__ENST00000445817.1_1_1:227618561-227618687:+|nuORF	MSMS	HCT116MG_D190212_S3	3	467.6091613769531	3	467.609328	1399.80615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0222	1	4.0509	3.5509	4.5509	0.028732								0	0	0	0.9619	1	1209	1209		0.094841	0	1		+		27731	15671	17627	17719	26625	26625					0.12224300653474529
RLHEKIQEA	9	Unmodified	_RLHEKIQEA_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MULTI-MSMS	HCT116MG_D190212_S2	2	562.3148193359375	2	562.314554	1122.61456	0.1306	7.3439E-05	0.62472	0.00035129	0.75532	0.00042473	562.3148233750554	18.37	0.67764	18.007	17.695	18.373	-0.36325					13	8	3	0	0	0	0.032289	1	6310	6310		98.73	37.64	1	27333000			27732	4011	17628	17720	26626	26626					0.058153351118335195
RLHEKIQEA	9	Unmodified	_RLHEKIQEA_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MULTI-MSMS	HCT116MG_D190212_S2	2	375.2118835449219	3	375.212128	1122.61456	-0.47012	-0.0001764	0.24194	9.0779E-05	-0.22818	-8.5617E-05	375.5466187626506	18.358	0.36591	17.995	17.851	18.217	-0.36325					10	5	3	0	0	0	0.5825	1	6319	6319		12.175	3.7304	1	10491000			27733	4011	17628	17720	26627	26627					0.058153351118335195
RLHELRVLTA	10	Unmodified	_RLHELRVLTA_					0	0	0		ENST00000468686.5_1_22:21982709-21983718:-|nuORF;ENSG00000161179|ENST00000292778|YDJC	ENST00000468686.5_1_22:21982709-21983718:-|nuORF	ENST00000468686.5_1_22:21982709-21983718:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	403.2468566894531	3	403.247173	1206.71969	0.035852	1.4457E-05	-1.3264	-0.00053485	-1.2905	-0.00052039	403.2467217639926	54.764	0.15224	54.764	54.688	54.841	0					6	2	3	0	0	0	0.88752	1	21036	21036		0.69767	0	1	29946000			27734	4482	17629	17721	26628	26628					0.12459876308275852
RLHERLVAI	9	Unmodified	_RLHERLVAI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	369.56451416015625	3	369.564614	1105.67201	-0.26299	-9.719E-05	-0.27571	-0.00010189	-0.53869	-0.00019908	369.56445279052605	32.615	0.2085	32.404	32.273	32.482	-0.21135					6	3	2	0	0	0	0.17033	1	12097	12097		44.392	5.1789	1	32747000			27735	5492	17630	17722	26629	26629					0.12340222108082344
RLHLKKKKKRK	11	Unmodified	_RLHLKKKKKRK_					0	0	0		AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	MSMS	HCT116MG_D190212_S1	1	488.3432312011719	3	488.343811	1462.0096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.131	1	51.131	50.631	51.631	0								0	0	0	0.96208	1	19527	19527		0	0	1				27736	103	17631	17723	26630	26630					0.29708025375066427
RLHLKKKKKRK	11	Unmodified	_RLHLKKKKKRK_					0	0	0		AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	MSMS	HCT116MG_D190212_S2	2	488.343017578125	3	488.343811	1462.0096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.573	1	51.39	50.89	51.89	-0.18369								0	0	0	0.96208	1	19791	19791		0	0	1				27737	103	17631	17723	26631	26631					0.29708025375066427
RLHLKKKKKRK	11	Unmodified	_RLHLKKKKKRK_					0	0	0		AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	MSMS	HCT116MG_D190212_S3	3	488.34271240234375	3	488.343811	1462.0096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.725	1	52.419	51.919	52.919	-0.30639								0	0	0	0.96208	1	19939	19939		0	0	1				27738	103	17631	17723	26632	26632					0.29708025375066427
RLHLKKKKKRK	11	Unmodified	_RLHLKKKKKRK_					0	0	0		AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	MSMS	HCT116MG_D190212_S3	3	488.34326171875	3	488.343811	1462.0096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.339	1	53.036	52.536	53.536	-0.30305								0	0	0	0.96208	1	20185	20185		0	0	1				27739	103	17631	17723	26633	26633					0.29708025375066427
RLHLKKKKKRK	11	Unmodified	_RLHLKKKKKRK_					0	0	0		AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	AluSg_dup33891|chr19:41731834-41732139:+|1.232566983441859|0.0052497421470697|7.88|474.0|14|3|sense	MSMS	HCT116MG_D190212_S3	3	488.34228515625	3	488.343811	1462.0096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.128	1	53.829	53.329	54.329	-0.29946								0	0	0	0.96208	1	20503	20503		0	0	1				27740	103	17631	17723	26634	26634					0.29708025375066427
RLHLMKRI	8	Unmodified	_RLHLMKRI_					0	0	0			REV__ENST00000545392.1_1_12:64890804-64891535:+|nuORF	REV__ENST00000545392.1_1_12:64890804-64891535:+|nuORF	MSMS	HCT116MG_D190212_S1	1	356.22772216796875	3	356.227056	1065.65934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.226	1	29.226	28.726	29.726	0								0	0	0	0.8837	1	10674	10674		1.6526	0	1		+		27741	13776	17632	17724	26635	26635					0.1291348744421157
RLHLRLERL	9	Unmodified	_RLHLRLERL_					0	0	0		ENST00000547667.5_1_12:56531318-56532071:+|nuORF;ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENST00000547667.5_1_12:56531318-56532071:+|nuORF	MSMS	HCT116MG_D190212_S1	1	603.38525390625	2	603.383106	1204.75166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.533	1	61.533	61.033	62.033	0								0	0	0	0.76967	1	23744	23744		2.0598	0	1				27742	3638	17633	17725	26636	26636					0.1574728878208589
RLHNTKYK	8	Unmodified	_RLHNTKYK_					0	0	0			REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	MSMS	HCT116MG_D190212_S2	2	530.3058471679688	2	530.306532	1058.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.398	1	12.102	11.602	12.602	-0.29576								0	0	0	0.8837	1	4051	4051		2.3027	0	1		+		27743	13522	17634	17726	26637	26637					0.0715567366560208
RLHQINIYL	9	Unmodified	_RLHQINIYL_					0	0	0		ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	MSMS	HCT116MG_D190212_S2	2	585.267578125	2	585.343115	1168.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.262	1	45.17	44.67	45.67	-0.092472								0	0	0	0.69648	1	17208	17208		19.257	4.4187	1				27744	2647	17635	17727	26638	26638					0.09408802388225013
RLIAQRYLL	9	Unmodified	_RLIAQRYLL_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	573.3614501953125	2	573.361308	1144.70806	0.70997	0.00040707	-0.19956	-0.00011442	0.51041	0.00029265	573.3610610362364	43.711	0.30846	43.633	43.453	43.762	-0.078373					12	5	3	0	0	0	0.049545	1	16591	16591		74.929	34.979	1	31336000			27745	1002	17636	17728	26639	26639					0.14149679284946615
RLIDLPGTEL	10	Unmodified	_RLIDLPGTEL_					0	0	0		ENST00000493068.2_1_10:99025521-99052393:-|nuORF;nc|ENSG00000213390|Q14CB8-5|ARHGAP19;nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19	ENST00000493068.2_1_10:99025521-99052393:-|nuORF	ENST00000493068.2_1_10:99025521-99052393:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	563.8265991210938	2	563.826963	1125.63937	0.40911	0.00023067	-0.17699	-9.9789E-05	0.23212	0.00013088	563.8267876223458	52.456	0.25618	52.456	52.28	52.536	0					10	4	3	0	0	0	0.22442	1	20067	20067		57.249	24.463	1	24382000			27746	6410	17637	17729	26640	26640					0.08157970194565678
RLIDLPGTEL	10	Unmodified	_RLIDLPGTEL_					0	0	0		ENST00000493068.2_1_10:99025521-99052393:-|nuORF;nc|ENSG00000213390|Q14CB8-5|ARHGAP19;nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19	ENST00000493068.2_1_10:99025521-99052393:-|nuORF	ENST00000493068.2_1_10:99025521-99052393:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	564.3289184570312	2	563.826963	1125.63937	0.52889	0.00029821	0.050799	2.8642E-05	0.57969	0.00032685	563.826840860363	52.649	0.36184	52.462	52.244	52.606	-0.18725					14	6	3	0	0	0	0.021434	1	20220	20220		117.76	64.357	1	55885000			27747	6410	17637	17729	26641	26641					0.08157970194565678
RLIDRIKTV	9	Unmodified	_RLIDRIKTV_					0	0	0		NAA35|p.T563Qfs*10|1|0.26|ENSG00000135040|chr9:86016651-86016651|A/-|frameshift_variant;NAA35|p.T563Nfs*29|1|0.26|ENSG00000135040|chr9:86016650-86016651|-/A|frameshift_variant;ENSG00000135040|ENST00000361671|NAA35	NAA35|p.T563Qfs*10|1|0.26|ENSG00000135040|chr9:86016651-86016651|A/-|frameshift_variant	NAA35|p.T563Qfs*10|1|0.26|ENSG00000135040|chr9:86016651-86016651|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	371.90814208984375	3	371.908269	1112.70298	-0.34522	-0.00012839	0.091614	3.4072E-05	-0.2536	-9.4317E-05	371.9082020814972	32.41	0.26007	32.18	32.046	32.306	-0.23009					9	4	3	0	0	0	0.017759	1	12013	12013		98.73	9.1213	1	22560000			27748	3323	17638	17730	26642	26642					0.15113375422311037
RLIGDAAKNQV	11	Unmodified	_RLIGDAAKNQV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA2|p.G138Afs*8|3|0.33|ENSG00000126803|chr14:64541257-64541257|G/-|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	HCT116MG_D190212_S1	1	592.8406982421875	2	592.840936	1183.66732	0.52371	0.00031048	-0.24697	-0.00014642	0.27673	0.00016406	592.8406351831579	25.431	0.20816	25.431	25.301	25.509	0					9	3	3	0	0	0	0.72853	1	9173	9173		17.863	4.2483	1	6210000			27749	2228;6330	17639	17731	26643	26643					0.08283293174645223
RLIGDAAKNQV	11	Unmodified	_RLIGDAAKNQV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;HSPA8|p.K569Dfs*6|1|0.3|ENSG00000109971|chr11:123058302-123058303|TC/-|frameshift_variant;ENSG00000126803|ENST00000247207|HSPA2;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA2|p.G138Afs*8|3|0.33|ENSG00000126803|chr14:64541257-64541257|G/-|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000204389|P0DMV8-2|HSPA1A	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	HCT116MG_D190212_S2	2	592.8411865234375	2	592.840936	1183.66732	0.7276	0.00043135	-0.079747	-4.7277E-05	0.64785	0.00038407	592.8407681972916	25.886	0.36348	25.517	25.343	25.706	-0.36914					10	6	3	0	0	0	0.030567	1	9352	9352		132.13	68.174	1	21236000			27750	2228;6330	17639	17731	26644	26644					0.08283293174645223
RLINQVLEL	9	Unmodified	_RLINQVLEL_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	HCT116MG_D190212_S1	1	549.3378295898438	2	549.337498	1096.66044	0.6178	0.00033938	0.42602	0.00023403	1.0438	0.00057341	549.3377839832739	53.385	0.25837	53.385	53.204	53.462	0					7	4	2	0	0	0	0.031089	1	20461	20461		85.272	13.35	1	19392000			27751	4175	17640	17732	26645	26645					0.1159798029407284
RLINQVLEL	9	Unmodified	_RLINQVLEL_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	HCT116MG_D190212_S2	2	549.3377075195312	2	549.337498	1096.66044	0.284	0.00015601	0.3669	0.00020155	0.6509	0.00035756	549.3376608514344	53.628	0.25817	53.439	53.274	53.532	-0.1894					10	4	3	0	0	0	0.020181	1	20638	20638		96.285	14.395	1	40964000			27752	4175	17640	17732	26646	26646					0.1159798029407284
RLIQESPTL	9	Unmodified	_RLIQESPTL_					0	0	0		ENST00000535479.5_1_12:7086310-7087113:-|nuORF;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	528.8060913085938	2	528.806031	1055.59751	-0.023634	-1.2498E-05	-0.074097	-3.9183E-05	-0.097731	-5.1681E-05	528.8060705644671	37.942	0.25988	37.942	37.759	38.019	0					8	4	2	0	0	0	0.023778	1	14194	14194		92.653	26.197	1	14278000			27753	2309	17641	17733	26647	26647					0.07193414506036788
RLIQESPTL	9	Unmodified	_RLIQESPTL_					0	0	0		ENST00000535479.5_1_12:7086310-7087113:-|nuORF;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	ENST00000535479.5_1_12:7086310-7087113:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	528.8056640625	2	528.806031	1055.59751	0.19398	0.00010258	-0.094698	-5.0077E-05	0.099282	5.2501E-05	528.8060075493665	37.975	0.3606	37.882	37.651	38.011	-0.09301					12	6	3	0	0	0	0.01405	1	14261	14261		103.35	30.386	1	43978000			27754	2309	17641	17733	26648	26648					0.07193414506036788
RLIRLLLPAA	10	Unmodified	_RLIRLLLPAA_					0	0	0			REV__HOXD8|p.P110Lfs*67|1|0.53|ENSG00000175879|chr2:176130689-176130689|C/-|frameshift_variant	REV__HOXD8|p.P110Lfs*67|1|0.53|ENSG00000175879|chr2:176130689-176130689|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	379.259033203125	3	379.260642	1134.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.417	1	57.139	56.639	57.639	-0.27755								0	0	0	0.97045	1	21819	21819		0.15932	0	1		+		27755	16888	17642	17734	26649	26649					0.19810842698734632
RLIRRRTP	8	Unmodified	_RLIRRRTP_					0	0	0			REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF	REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF	MSMS	HCT116MG_D190212_S2	2	534.3477172851562	2	534.349066	1066.68358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.59	1	37.487	36.987	37.987	-0.10318								0	0	0	0.8837	1	14095	14095		2.5775	0	1		+		27756	16320	17643	17735	26650	26650					0.152904639220651
RLIRRRTP	8	Unmodified	_RLIRRRTP_					0	0	0			REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF	REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF	MSMS	HCT116MG_D190212_S4	4	534.3486328125	2	534.349066	1066.68358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.59	1	41.214	40.714	41.714	-0.37637								0	0	0	0.8837	1	15265	15265		2.5775	0	1		+		27757	16320	17643	17735	26651	26651					0.152904639220651
RLISKFDTV	9	Unmodified	_RLISKFDTV_					0	0	0		ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF;ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E	ENST00000528228.1_1_8:14166702-14167074:+|nuORF	ENST00000528228.1_1_8:14166702-14167074:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	540.318603515625	2	539.816399	1077.61824	0.46944	0.00025341	0.29494	0.00015921	0.76438	0.00041263	540.318340326541	35.205	0.20696	35.062	34.932	35.139	-0.14245					6	3	2	0	0	0	0.14376	1	13153	13153		62.573	31.936	1	23816000			27758	4104	17644	17736	26652	26652					0.0825400488570267
RLISKFDTV	9	Unmodified	_RLISKFDTV_					0	0	0		ENST00000528228.1_1_8:14166702-14167074:+|nuORF;ENST00000507665.5_1_4:99808220-99850263:-|nuORF;ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E	ENST00000528228.1_1_8:14166702-14167074:+|nuORF	ENST00000528228.1_1_8:14166702-14167074:+|nuORF	MSMS	HCT116MG_D190212_S2	2	539.816162109375	2	539.816399	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.284	1	35.142	34.642	35.642	-0.14245								0	0	0	0.29167	1	13156	13156		51.63	26.23	1				27759	4104	17644	17736	26653	26653					0.0825400488570267
RLKEKFVMRKI	11	Unmodified	_RLKEKFVMRKI_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	HCT116MG_D190212_S2	2	483.3031921386719	3	483.302513	1446.88571	0.20623	9.967E-05	0.17362	8.3909E-05	0.37984	0.00018358	483.302989201466	55.495	0.56709	55.309	55.072	55.639	-0.18565					23	10	3	0	0	0	0.74191	1	21414	21414		0.45452	0.35968	1	31305000			27760	1713	17645	17737	26654	26654					0.18014186492587214
RLKEKVLAKCL	11	Unmodified	_RLKEKVLAKCL_					0	0	0			REV__ENSG00000105229|ENST00000262971|PIAS4	REV__ENSG00000105229|ENST00000262971|PIAS4	MSMS	HCT116MG_D190212_S4	4	434.27459716796875	3	434.275964	1299.80606	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.409	1	56.103	55.603	56.603	-0.30626								0	0	0	0.95954	1	21145	21145		1.3296	0.55311	1		+		27761	11241	17646	17738	26655	26655					0.16815119818625135
RLKGVLLVPVV	11	Unmodified	_RLKGVLLVPVV_					0	0	0			REV__ENST00000418747.2_1_9:130877356-130879998:-|nuORF	REV__ENST00000418747.2_1_9:130877356-130879998:-|nuORF	MSMS	HCT116MG_D190212_S4	4	398.2747802734375	3	398.276181	1191.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.85	1	48.485	47.985	48.985	-0.365								0	0	0	0.96121	1	18100	18100		0.45452	0	1		+		27762	15501	17647	17739	26656	26656					0.2184828252995885
RLKHALKP	8	Unmodified	_RLKHALKP_					0	0	0		ENST00000496877.1_1_3:100630362-100630893:-|nuORF	ENST00000496877.1_1_3:100630362-100630893:-|nuORF	ENST00000496877.1_1_3:100630362-100630893:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	481.81695556640625	2	481.816536	961.618519	0.25345	0.00012211	-0.2507	-0.00012079	0.0027458	1.323E-06	481.81651030668763	60.89	1.6572	60.742	60.373	62.03	-0.14852					51	31	2	0	0	0	0.88026	1	23533	23533		0	0	1	22277000			27763	8393	17648	17740	26657	26657					0.1361746939620616
RLKKKKIF	8	Unmodified	_RLKKKKIF_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MSMS	HCT116MG_D190212_S4	4	354.24847412109375	3	354.249966	1059.72807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.625	1	21.407	20.907	21.907	-0.21832								0	0	0	0.8837	1	7476	7476		0	0	1				27764	5940	17649	17741	26658	26658					0.20059475015523276
RLKKKKIF	8	Unmodified	_RLKKKKIF_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MSMS	HCT116MG_D190212_S4	4	354.24871826171875	3	354.249966	1059.72807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.112	1	47.743	47.243	48.243	-0.36907								0	0	0	0.8837	1	17808	17808		0	0	1				27765	5940	17649	17741	26659	26659					0.20059475015523276
RLKKLKIKK	9	Unmodified	_RLKKLKIKK_					0	0	0		ENSG00000230873|ENST00000536551|STMND1	ENSG00000230873|ENST00000536551|STMND1	ENSG00000230873|ENST00000536551|STMND1	MSMS	HCT116MG_D190212_S3	3	577.9248046875	2	577.926618	1153.83868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.32	1	47.005	46.505	47.505	-0.31525								0	0	0	0.77025	1	17767	17767		0	0	1				27766	6503	17650	17742	26660	26660					0.2679169500374883
RLKLLKKEYLK	11	Unmodified	_RLKLLKKEYLK_					0	0	0			REV__nc|ENSG00000120802|P42167-2|TMPO	REV__nc|ENSG00000120802|P42167-2|TMPO	MSMS	HCT116MG_D190212_S1	1	477.9831848144531	3	477.985178	1430.93371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.181	1	11.181	10.681	11.681	0								0	0	0	0.9619	1	3496	3496		0.094841	0.094841	1		+		27767	11701	17651	17743	26661	26661					0.23547583684330675
RLKLNIKFI	9	Unmodified	_RLKLNIKFI_					0	0	0		tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	tr|U7T126|U7T126_FUSNUAcyltransferase3domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00666PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	382.24371337890625	3	382.257009	1143.7492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.269	1	57.98	57.48	58.48	-0.28879								0	0	0	0.7701	1	21895	21895		0.23584	0	1				27768	18554	17652	17744	26662	26662					0.18307440324406343
RLKPDIMIV	9	Unmodified	_RLKPDIMIV_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MSMS	HCT116MG_D190212_S4	4	362.2217712402344	3	362.223088	1083.64744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.737	1	49.375	48.875	49.875	-0.36213								0	0	0	0.7694	1	18459	18459		2.9952	0	1				27769	4427	17653	17745	26663	26663					0.10895825910324675
RLKQKAESL	9	Unmodified	_RLKQKAESL_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MSMS	HCT116MG_D190212_S2	2	358.22052001953125	3	358.220624	1071.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.221	1	16.871	16.371	17.371	-0.34933								0	0	0	0.76677	1	5847	5847		12.241	0	1				27770	5133	17654	17746	26664	26664					0.10708809634274985
RLKRKLIVRQ	10	Unmodified	_RLKRKLIVRQ_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MSMS	HCT116MG_D190212_S1	1	655.4497680664062	2	655.44878	1308.88301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.33	1	58.33	57.83	58.83	0								0	0	0	0.96937	1	22467	22467		0.40072	0.40072	1				27771	4063	17655	17747	26665	26665					0.24092099149970636
RLKRRYQKKPK	11	Unmodified	_RLKRRYQKKPK_					0	0	0			REV__nc|ENSG00000065883|Q14004-2|CDK13	REV__nc|ENSG00000065883|Q14004-2|CDK13	MSMS	HCT116MG_D190212_S1	1	751.373779296875	2	750.983518	1499.95248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.902	1	16.902	16.402	17.402	0								0	0	0	0.96149	1	5719	5719		0.30703	0	1		+		27772	10707	17656	17748	26666	26666					0.22250558098699003
RLKTVLHTV	9	Unmodified	_RLKTVLHTV_					0	0	0			REV__ENST00000473400.1_1_10:104160383-104160916:+|nuORF	REV__ENST00000473400.1_1_10:104160383-104160916:+|nuORF	MSMS	HCT116MG_D190212_S1	1	356.2276306152344	3	356.229231	1065.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.779	1	41.779	41.279	42.279	0								0	0	0	0.76948	1	15741	15741		2.7352	0	1		+		27773	10826	17657	17749	26667	26667					0.13565703876520274
RLKWRLHKRLH	11	Unmodified	_RLKWRLHKRLH_					0	0	0			REV__ENST00000342992.10_3_2:179396097-179396157:-|nuORF	REV__ENST00000342992.10_3_2:179396097-179396157:-|nuORF	MSMS	HCT116MG_D190212_S1	1	514.9661254882812	3	514.991661	1541.95315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.299	1	54.299	53.799	54.799	0								0	0	0	0.9619	1	20818	20818		0.094841	0	1		+		27774	14987	17658	17750	26668	26668					0.20385397538416328
RLLALLRPP	9	Unmodified	_RLLALLRPP_					0	0	0		ENSG00000157150|ENST00000287814|TIMP4	ENSG00000157150|ENST00000287814|TIMP4	ENSG00000157150|ENST00000287814|TIMP4	MSMS	HCT116MG_D190212_S2	2	350.2365417480469	3	350.237838	1047.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.953	1	25.584	25.084	26.084	-0.36914								0	0	0	0.76991	1	9368	9368		1.1933	0	1				27775	4317	17659	17751	26669	26669					0.1697459811882709
RLLDGAFKL	9	Unmodified	_RLLDGAFKL_					0	0	0		ENST00000491646.1_1_2:122217554-122217677:-|nuORF;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	ENST00000491646.1_1_2:122217554-122217677:-|nuORF	ENST00000491646.1_1_2:122217554-122217677:-|nuORF	MSMS	HCT116MG_D190212_S1	1	516.813720703125	2	516.813659	1031.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.773	1	48.773	48.273	49.273	0								0	0	0	0.00072443	1	18568	18568		128.93	25.184	1				27776	1294	17660	17752	26670	26670					0.09822326093899392
RLLDGAFKL	9	Unmodified	_RLLDGAFKL_					0	0	0		ENST00000491646.1_1_2:122217554-122217677:-|nuORF;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	ENST00000491646.1_1_2:122217554-122217677:-|nuORF	ENST00000491646.1_1_2:122217554-122217677:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	516.8140258789062	2	516.813659	1031.61277	0.32499	0.00016796	0.1958	0.00010119	0.52079	0.00026915	516.8136973074454	48.858	0.304	48.714	48.49	48.794	-0.1437					10	5	3	0	0	0	0.030039	1	18683	18683		86.332	11.403	1	130990000			27777	1294	17660	17752	26671	26671					0.09822326093899392
RLLDKLRTV	9	Unmodified	_RLLDKLRTV_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MSMS	HCT116MG_D190212_S2	2	557.3589477539062	2	557.358765	1112.70298	0.2122	0.00011827	0.24521	0.00013667	0.45741	0.00025494	557.3587567395442	32.406	0.20796	32.176	32.046	32.254	-0.23009					7	3	3	0	0	0	0.48304	1	12018	12018		23.79	0	1	19481000	+		27778	10634	17661	17753	26672	26672					0.15113375422311037
RLLDLDIPMSV	11	Unmodified	_RLLDLDIPMSV_					0	0	0		ENSG00000153560|ENST00000283629|UBP1;nc|ENSG00000153560|Q9NZI7-4|UBP1	ENSG00000153560|ENST00000283629|UBP1	ENSG00000153560|ENST00000283629|UBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	636.35595703125	2	636.355031	1270.69551	0.71964	0.00045795	0.46861	0.0002982	1.1882	0.00075615	636.3549888416094	56.053	0.25722	56.053	55.913	56.171	0					9	4	3	0	0	0	0.032051	1	21566	21566		124.95	0	1	11425000			27779	4194	17662	17754	26673	26673					0.07098855039703267
RLLDSEIKI	9	Unmodified	_RLLDSEIKI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-SECPEP	HCT116MG_D190212_S1	1	543.3013305664062	2	543.829506	1085.64446	0.445	0.000242	0.13582	7.3863E-05	0.58082	0.00031587	543.8295527380704	43.394	0.2593	43.394	43.264	43.524	0					9	4	3	0	0	0	0.25347	1	16417	16417		14.838	4.0143	1	36535000			27780	4810	17663	17755	26674	26674					0.10506274057183873
RLLDVLAP	8	Unmodified	_RLLDVLAP_					0	0	0		COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;COL18A1|p.R608Gfs*27|1|0.21|ENSG00000182871|chr21:45468712-45468712|C/-|frameshift_variant;COL18A1|p.G625Efs*10|1|0.36|ENSG00000182871|chr21:45468759-45468759|G/-|frameshift_variant;COL18A1|p.G746Afs*3|1|0.14|ENSG00000182871|chr21:45477470-45477470|G/-|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	448.7814636230469	2	448.781828	895.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.516	1	50.516	50.016	51.016	0								0	0	0	0.27832	1	19277	19277		57.471	13.064	1				27781	512	17664	17756	26675	26675					0.09714965656803543
RLLEATSYL	9	Unmodified	_RLLEATSYL_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	HCT116MG_D190212_S1	1	533.3005981445312	2	533.300581	1064.58661	0.38622	0.00020597	0.43201	0.00023039	0.81823	0.00043636	533.3007455847148	47.139	0.25891	47.139	46.958	47.217	0					9	4	3	0	0	0	0.090581	1	17905	17905		60.074	20.124	1	33807000			27782	800	17665	17757	26676	26676					0.05690012131753974
RLLEATSYL	9	Unmodified	_RLLEATSYL_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	HCT116MG_D190212_S2	2	533.3009033203125	2	533.300581	1064.58661	0.62384	0.0003327	0.0067397	3.5943E-06	0.63058	0.00033629	533.3005941676828	47.226	0.51682	47.104	46.922	47.439	-0.12175					11	9	2	0	0	0	0.28073	1	18040	18040		32.786	5.1569	1	16467000			27783	800	17665	17757	26677	26677					0.05690012131753974
RLLEDKKITV	10	Unmodified	_RLLEDKKITV_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MSMS	HCT116MG_D190212_S2	2	405.58685302734375	3	405.587084	1213.73942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.403	1	31.154	30.654	31.654	-0.24883								0	0	0	0.452	1	11583	11583		50.13	30.143	1				27784	5239	17666	17758	26678	26678					0.14110207528347019
RLLEGVNQL	9	Unmodified	_RLLEGVNQL_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	521.3062133789062	2	521.306198	1040.59784	0.19188	0.00010003	0.1442	7.5174E-05	0.33608	0.0001752	521.3061068846682	42.252	0.25975	42.252	42.123	42.383	0					9	4	3	0	0	0	0.034046	1	15954	15954		82.529	17.294	1	28678000			27785	594	17667	17759	26679	26679					0.07916834225898128
RLLEGVNQL	9	Unmodified	_RLLEGVNQL_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	521.306198	1040.59784	0.28313	0.0001476	0.0089652	4.6736E-06	0.29209	0.00015227	521.3062198086462	42.266	0.25877	42.197	42.068	42.327	-0.068199	-0.027574	-2.9402E-05	NaN	82.529	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20086000			27786	594	17667	17759							0.07916834225898128
RLLEILLRARE	11	Unmodified	_RLLEILLRARE_					0	0	0			REV__nc|ENSG00000100425|O95696|BRD1	REV__nc|ENSG00000100425|O95696|BRD1	MULTI-MSMS	HCT116MG_D190212_S2	2	691.4360961914062	2	691.435535	1380.85652	0.64363	0.00044503	0.1064	7.3568E-05	0.75003	0.0005186	691.4357162721938	59.618	0.66513	59.458	59.285	59.95	-0.16012					21	13	2	0	0	0	0.74191	1	23045	23045		1.1933	0	1	22171000	+		27787	11085	17668	17760	26680	26680					0.18132365467977252
RLLENMTEV	9	Unmodified	_RLLENMTEV_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1;PDXDC1|p.V613L|1|0.29|ENSG00000179889|chr16:15034310-15034310|G/C|missense_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	552.7891845703125	2	552.789524	1103.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.026	1	42.026	41.526	42.526	0								0	0	0	0.14112	1	15840	15840		51.63	18.844	1				27788	5571	17669	17761	26681	26681					0.016854643916758505
RLLENMTEV	9	Unmodified	_RLLENMTEV_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1;PDXDC1|p.V613L|1|0.29|ENSG00000179889|chr16:15034310-15034310|G/C|missense_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	553.2584838867188	2	552.789524	1103.56449	0.57921	0.00032018	-1.0624	-0.00058728	-0.48317	-0.00026709	552.7890005995496	41.954	0.20892	41.954	41.81	42.019	0					6	3	2	0	0	0	0.24849	1	15788	15788		18.373	2.224	1	5907800			27789	5571	17669	17761	26682	26682					0.016854643916758505
RLLEQKVEL	9	Unmodified	_RLLEQKVEL_					0	0	0		ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENST00000557680.1_1_14:39648378-39651535:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	564.3433837890625	2	564.342781	1126.67101	0.72041	0.00040656	2.3722	0.0013387	3.0926	0.0017453	564.3442755619393	37.496	0.56784	37.496	37.348	37.916	0					14	10	2	0	0	0	0.071914	1	14031	14031		63.961	8.4578	1	9036600			27790	1744	17670	17762	26683	26683					0.11273962948507688
RLLETVIDV	9	Unmodified	_RLLETVIDV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	HCT116MG_D190212_S1	1	529.3157348632812	2	529.316232	1056.61791	0.13124	6.9469E-05	-0.075637	-4.0036E-05	0.055607	2.9433E-05	529.316084581943	50.91	0.20667	50.91	50.781	50.988	0					6	3	2	0	0	0	0.066823	1	19451	19451		66.457	7.7779	1	17439000			27791	5557	17671	17763	26684	26684					0.0918658516582127
RLLHEVQEL	9	Unmodified	_RLLHEVQEL_					0	0	0		ENST00000552390.5_1_12:57926966-57928919:-|nuORF;DCTN2|p.D201Rfs*2|1|0.39|ENSG00000175203|chr12:57534022-57534023|-/G|frameshift_variant;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000547345.5_1_12:57928805-57940846:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MSMS	HCT116MG_D190212_S2	2	568.908447265625	2	568.824755	1135.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.426	1	35.284	34.784	35.784	-0.14245								0	0	0	0.57787	1	13214	13214		24.991	4.5373	1				27792	653	17672	17764	26685	26685					0.07256505771670163
RLLHLPPPP	9	Unmodified	_RLLHLPPPP_					0	0	0		ENST00000497918.5_1_2:220029863-220033027:-|nuORF;ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	MSMS	HCT116MG_D190212_S1	1	520.3226928710938	2	520.324194	1038.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.315	1	22.315	21.815	22.815	0								0	0	0	0.76781	1	7894	7894		8.5933	2.8329	1				27793	8404	17673	17765	26686	26686					0.11606336193403877
RLLHLPPPP	9	Unmodified	_RLLHLPPPP_					0	0	0		ENST00000497918.5_1_2:220029863-220033027:-|nuORF;ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	MSMS	HCT116MG_D190212_S1	1	520.3230590820312	2	520.324194	1038.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.345	1	30.345	29.845	30.845	0								0	0	0	0.76877	1	11126	11126		5.2307	0.47466	1				27794	8404	17673	17765	26687	26687					0.11606336193403877
RLLIILRLLRL	11	Unmodified	_RLLIILRLLRL_					0	0	0			REV__nc|ENSG00000274391|P56180-4|TPTE	REV__nc|ENSG00000274391|P56180-4|TPTE	MSMS	HCT116MG_D190212_S3	3	696.4988403320312	2	696.500481	1390.98641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.145	1	14.225	13.725	14.725	0.079683								0	0	0	0.96149	1	4533	4533		0.30703	0	1		+		27795	14454	17674	17766	26688	26688					0.3065558653777316
RLLIILRLLRL	11	Unmodified	_RLLIILRLLRL_					0	0	0			REV__nc|ENSG00000274391|P56180-4|TPTE	REV__nc|ENSG00000274391|P56180-4|TPTE	MSMS	HCT116MG_D190212_S3	3	696.9010620117188	2	696.500481	1390.98641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.19	1	14.269	13.769	14.769	0.079683								0	0	0	0.96208	1	4551	4551		0	0	1		+		27796	14454	17674	17766	26689	26689					0.3065558653777316
RLLKHVPKII	10	Unmodified	_RLLKHVPKII_					0	0	0		nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	MSMS	HCT116MG_D190212_S2	2	406.2795715332031	3	406.279926	1215.81795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.422	1	59.262	58.762	59.762	-0.16012								0	0	0	0.97116	1	22978	22978		0	0	1				27797	4357	17675	17767	26690	26690					0.21867104624129752
RLLKLDGT	8	Unmodified	_RLLKLDGT_					0	0	0			REV__USP44|p.I184Nfs*19|1|0.39|ENSG00000136014|chr12:95533706-95533707|-/T|frameshift_variant	REV__USP44|p.I184Nfs*19|1|0.39|ENSG00000136014|chr12:95533706-95533707|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	458.2864074707031	2	458.284734	914.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.154	1	47.154	46.654	47.654	0								0	0	0	0.8837	1	17909	17909		5.2307	0	1		+		27798	12116	17676	17768	26691	26691					0.09422064168484212
RLLKRIGEVP	10	Unmodified	_RLLKRIGEVP_					0	0	0			REV__ENST00000518895.1_1_8:621944-623322:-|nuORF	REV__ENST00000518895.1_1_8:621944-623322:-|nuORF	MSMS	HCT116MG_D190212_S2	2	590.8779907226562	2	590.879865	1179.74518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.858	1	38.773	38.273	39.273	-0.084618								0	0	0	0.96263	1	14607	14607		3.9444	2.2918	1		+		27799	16219	17677	17769	26692	26692					0.16249350830685216
RLLLPLIVLTW	11	Unmodified	_RLLLPLIVLTW_					0	0	0		EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant	EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant	EHHADH|p.L406Cfs*35|1|0.46|ENSG00000113790|chr3:185193181-185193181|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	446.2960205078125	3	446.295353	1335.86423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.979	1	37.678	37.178	38.178	-0.30137								0	0	0	0.9619	1	14054	14054		0.094841	0	1				27800	763	17678	17770	26693	26693					0.20973124735542115
RLLLRLLPL	9	Unmodified	_RLLLRLLPL_					0	0	0			REV__ENST00000414035.5_1_7:100875905-100880680:-|nuORF	REV__ENST00000414035.5_1_7:100875905-100880680:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	553.8485717773438	2	553.892244	1105.76993	0.50235	0.00027825	-0.23684	-0.00013119	0.26551	0.00014706	554.3930786561219	56.017	0.15377	56.017	55.913	56.067	0					4	2	2	0	0	0	0.26422	1	21543	21543		3.9444	0	1	2208200	+		27801	14820	17679	17771	26694	26694					0.2212803070406153
RLLLRLLPL	9	Unmodified	_RLLLRLLPL_					0	0	0			REV__ENST00000414035.5_1_7:100875905-100880680:-|nuORF	REV__ENST00000414035.5_1_7:100875905-100880680:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	553.892244	1105.76993	0.42754	0.00023681	0.18245	0.00010106	0.60998	0.00033786	553.8924606689477	56.078	0.15343	55.896	55.796	55.949	-0.18261	-0.060725	8.5543E-05	NaN	3.9444	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7996600	+		27802	14820	17679	17771							0.2212803070406153
RLLLVKKPSVR	11	Unmodified	_RLLLVKKPSVR_					0	0	0		RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN	RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant	RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	436.96588134765625	3	436.966118	1307.87652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.184	1	13.184	12.684	13.684	0								0	0	0	0.96208	1	4271	4271		0	0	1				27803	5413	17680	17772	26695	26695					0.234901611985606
RLLPLKLA	8	Unmodified	_RLLPLKLA_					0	0	0			REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF	REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF	MSMS	HCT116MG_D190212_S1	1	462.3218078613281	2	462.323663	922.632772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.753	1	58.753	58.253	59.253	0								0	0	0	0.8837	1	22641	22641		0	0	1		+		27804	14805	17681	17773	26696	26696					0.16836121824485417
RLLPLKLALG	10	Unmodified	_RLLPLKLALG_					0	0	0			REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF	REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF	MSMS	HCT116MG_D190212_S2	2	365.2798156738281	3	365.253376	1092.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.826	1	58.661	58.161	59.161	-0.1653								0	0	0	0.97116	1	22744	22744		0	0	1		+		27805	14805	17682	17774	26697	26697					0.19564037950090096
RLLPLKLALG	10	Unmodified	_RLLPLKLALG_					0	0	0			REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF	REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF	MSMS	HCT116MG_D190212_S4	4	365.2531433105469	3	365.253376	1092.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.143	1	49.784	49.284	50.284	-0.35878								0	0	0	0.97116	1	18620	18620		0	0	1		+		27806	14805	17682	17774	26698	26698					0.19564037950090096
RLLPLKLALG	10	Unmodified	_RLLPLKLALG_					0	0	0			REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF	REV__ENST00000304032.12_1_2:237036200-237036260:+|nuORF	MSMS	HCT116MG_D190212_S4	4	365.2533874511719	3	365.253376	1092.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.405	1	56.098	55.598	56.598	-0.30626								0	0	0	0.97116	1	21143	21143		0	0	1		+		27807	14805	17682	17774	26699	26699					0.19564037950090096
RLLPRLLHS	9	Unmodified	_RLLPRLLHS_					0	0	0		ENST00000397677.5_1_8:23118732-23118936:+|nuORF	ENST00000397677.5_1_8:23118732-23118936:+|nuORF	ENST00000397677.5_1_8:23118732-23118936:+|nuORF	MSMS	HCT116MG_D190212_S1	1	552.8516845703125	2	552.85365	1103.69275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.367	1	33.367	32.867	33.867	0								0	0	0	0.76834	1	12346	12346		6.7232	0.96273	1				27808	7670	17683	17775	26700	26700					0.1450481248775759
RLLQDHPWLL	10	Unmodified	_RLLQDHPWLL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ACLY|p.G297Vfs*31|1|0.32|ENSG00000131473|chr17:41905635-41905635|C/-|frameshift_variant;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	HCT116MG_D190212_S2	2	645.8690185546875	2	645.869497	1289.72444	0.51659	0.00033365	-0.45619	-0.00029464	0.060405	3.9014E-05	645.8693430234906	53.489	0.25674	53.3	53.172	53.429	-0.1894					8	4	2	0	0	0	0.64532	1	20601	20601		34.932	14.351	1	12588000			27809	3145	17684	17776	26701	26701					0.09116760451047412
RLLQETHQA	9	Unmodified	_RLLQETHQA_					0	0	0		ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	548.2454833984375	2	548.298904	1094.58326	0.31352	0.0001719	0.82994	0.00045506	1.1435	0.00062696	548.2992078269276	21.76	0.20807	21.375	21.271	21.479	-0.38503					5	3	2	0	0	0	0.26031	1	7698	7698		34.932	12.274	1	5345100			27810	8829	17685	17777	26702	26702					0.03974762077768901
RLLQKVGP	8	Unmodified	_RLLQKVGP_					0	0	0		ENST00000561018.5_1_15:41067168-41068598:-|nuORF	ENST00000561018.5_1_15:41067168-41068598:-|nuORF	ENST00000561018.5_1_15:41067168-41068598:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	456.1629943847656	2	455.795269	909.575986	-0.005239	-2.3879E-06	0.009213	4.1992E-06	0.003974	1.8113E-06	455.7952466221234	19.626	0.20877	19.626	19.495	19.704	0					5	3	2	0	0	0	0.81097	1	6786	6786		10.183	0	1	3416400			27811	8813	17686	17778	26703	26703					0.11758074267993379
RLLRLLVKH	9	Unmodified	_RLLRLLVKH_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	383.26507568359375	3	383.264387	1146.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.704	1	58.539	58.039	59.039	-0.1653								0	0	0	0.77019	1	22694	22694		0.23584	0	1				27812	4314	17687	17779	26704	26704					0.2038166479285337
RLLRLLVKH	9	Unmodified	_RLLRLLVKH_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	383.26519775390625	3	383.264387	1146.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.711	1	58.428	57.928	58.928	-0.28305								0	0	0	0.76995	1	22075	22075		1.0715	0	1				27813	4314	17687	17779	26705	26705					0.2038166479285337
RLLWLLRQL	9	Unmodified	_RLLWLLRQL_					0	0	0			REV__ENSG00000101986|ENST00000218104|ABCD1	REV__ENSG00000101986|ENST00000218104|ABCD1	MSMS	HCT116MG_D190212_S4	4	404.26409912109375	3	404.264276	1209.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.915	1	56.614	56.114	57.114	-0.3004								0	0	0	0.77018	1	21348	21348		0.26902	0	1		+		27814	11140	17688	17780	26706	26706					0.17450245072973303
RLLWVSLVP	9	Unmodified	_RLLWVSLVP_					0	0	0			REV__ENST00000396720.7_1_19:48206015-48206201:+|nuORF	REV__ENST00000396720.7_1_19:48206015-48206201:+|nuORF	MSMS	HCT116MG_D190212_S4	4	541.839111328125	2	541.839677	1081.6648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.778	1	48.413	47.913	48.913	-0.365								0	0	0	0.76967	1	18072	18072		2.0598	0	1		+		27815	15355	17689	17781	26707	26707					0.1272348950765263
RLMKELEEL	9	Unmodified	_RLMKELEEL_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-MSMS	HCT116MG_D190212_S2	2	580.8207397460938	2	580.820824	1159.62709	0.51255	0.0002977	-0.27096	-0.00015738	0.24158	0.00014032	580.8205957988938	40.227	0.31183	40.154	39.998	40.31	-0.072838					11	5	3	0	0	0	0.02327	1	15181	15181		93.166	0	1	46538000	+		27816	13728	17690	17782	26708	26708					0.053666104598733
RLMKELEEL	9	Unmodified	_RLMKELEEL_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-MATCH	HCT116MG_D190212_S1	1		2	580.820824	1159.62709	0.28226	0.00016394	-1.359	-0.00078933	-1.0767	-0.00062539	580.8209788377228	40.216	0.31065	40.216	40.021	40.332	0	0.031137	-0.0012313	NaN	93.166	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15011000	+		27817	13728	17690	17782							0.053666104598733
RLMKELEEL	9	Unmodified	_RLMKELEEL_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	580.820824	1159.62709	0.51255	0.0002977	-0.27096	-0.00015738	0.24158	0.00014032	580.8205957988938	40.227	0.31183	40.154	39.998	40.31	-0.072838	-0.031137	3.2562E-05	NaN	93.166	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46538000	+		27818	13728	17690	17782							0.053666104598733
RLMKRVHGK	9	Unmodified	_RLMKRVHGK_					0	0	0			REV__ENSG00000080608|ENST00000397885|PUM3	REV__ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	HCT116MG_D190212_S1	1	562.3428344726562	2	562.845302	1123.67605	0.49387	0.00027797	-0.51632	-0.00029061	-0.022447	-1.2634E-05	562.8450374604831	54.206	0.25645	54.206	54.026	54.282	0					6	4	2	0	0	0	0.26422	1	20766	20766		7.2892	7.2892	1	33641000	+		27819	10867	17691	17783	26709	26709					0.11915988330133587
RLMKTLSKL	9	Unmodified	_RLMKTLSKL_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MSMS	HCT116MG_D190212_S2	2	363.89849853515625	3	363.898605	1088.67399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.511	1	30.226	29.726	30.726	-0.28453								0	0	0	0.10275	1	11220	11220		55.249	9.2263	1				27820	3559	17692	17784	26710	26710					0.13319514801673904
RLMKTLSKL	9	Unmodified	_RLMKTLSKL_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MSMS	HCT116MG_D190212_S2	2	545.3446655273438	2	545.344269	1088.67399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.513	1	30.229	29.729	30.729	-0.28453								0	0	0	0.70756	1	11221	11221		24.991	0	1				27821	3559	17692	17784	26711	26711					0.13319514801673904
RLMNDMTAV	9	Unmodified	_RLMNDMTAV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	HCT116MG_D190212_S1	1	525.7573852539062	2	525.757169	1049.49979	0.43251	0.0002274	-0.22666	-0.00011917	0.20585	0.00010823	525.7570865924966	37.734	0.26071	37.734	37.55	37.811	0					11	4	3	0	0	0	0.061422	1	14110	14110		69.105	40.023	1	20850000			27822	2708	17693	17785	26712	26712					-0.022984336859735777
RLMNDMTAV	9	Unmodified	_RLMNDMTAV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MSMS	HCT116MG_D190212_S2	2	525.757080078125	2	525.757169	1049.49979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.784	1	37.683	37.183	38.183	-0.10039								0	0	0	0.034054	1	14174	14174		78.728	42.684	1				27823	2708	17693	17785	26713	26713					-0.022984336859735777
RLMNDMTAV	9	Unmodified	_RLMNDMTAV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	HCT116MG_D190212_S3	3	525.7559204101562	2	525.757169	1049.49979	0.48326	0.00025408	-1.1934	-0.00062742	-0.71011	-0.00037334	525.7562678186407	37.986	0.25005	37.685	37.583	37.833	-0.30137					16	7	3	0	0	0	0.090581	1	14034	14034		60.074	30.992	1	24191000			27824	2708	17693	17785	26714	26714					-0.022984336859735777
RLMNDMTAV	9	Unmodified	_RLMNDMTAV_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	HCT116MG_D190212_S4	4	525.755859375	2	525.757169	1049.49979	0.16498	8.6738E-05	-1.3844	-0.00072788	-1.2195	-0.00064114	525.7562162151205	38.069	0.201	37.686	37.611	37.812	-0.38283					7	5	2	0	0	0	0.53593	1	13944	13944		14.838	3.198	1	5164300			27825	2708	17693	17785	26715	26715					-0.022984336859735777
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;HSPA4L|p.G575Efs*18|1|0.36|ENSG00000164070|chr4:127820470-127820470|A/-|frameshift_variant;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	517.7684936523438	2	517.768591	1033.52263	0.3236	0.00016755	-0.40564	-0.00021003	-0.082043	-4.2479E-05	517.7682131398556	29.815	0.25983	29.815	29.685	29.945	0					6	4	2	0	0	0	0.13316	1	10935	10935		51.63	18.844	1	10311000			27826	5144;4663	17694	17786	26716	26716					0.007209087031469608
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;HSPA4L|p.G575Efs*18|1|0.36|ENSG00000164070|chr4:127820470-127820470|A/-|frameshift_variant;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7682495117188	2	517.768591	1033.52263	-0.051513	-2.6672E-05	-0.52543	-0.00027205	-0.57694	-0.00029872	517.768171844757	30.315	0.25747	30.03	29.822	30.079	-0.28453					6	4	2	0	0	0	0.061422	1	11156	11156		69.105	29.155	1	24551000			27827	5144;4663	17694	17786	26717	26717					0.007209087031469608
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;HSPA4L|p.G575Efs*18|1|0.36|ENSG00000164070|chr4:127820470-127820470|A/-|frameshift_variant;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	HSPA4|p.S737Afs*9|1|0.18|ENSG00000170606|chr5:133103911-133103911|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	517.76904296875	2	517.768591	1033.52263	0.2488	0.00012882	0.0598	3.0962E-05	0.3086	0.00015978	517.768472962453	30.309	0.2504	30.059	29.861	30.112	-0.24946					10	4	3	0	0	0	0.061422	1	11042	11042		69.105	19.172	1	17091000			27828	5144;4663	17694	17786	26718	26718					0.007209087031469608
RLNDFASTV	9	Unmodified	_RLNDFASTV_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-MSMS	HCT116MG_D190212_S2	2	511.7671203613281	2	511.766906	1021.51926	0.064776	3.315E-05	-0.27084	-0.00013861	-0.20607	-0.00010546	511.7670587111735	38.078	0.25812	37.985	37.857	38.115	-0.09301					7	4	2	0	0	0	0.066823	1	14302	14302		66.457	6.3828	1	15262000			27829	5513	17695	17787	26719	26719					0.009359819208157205
RLNDTIQLL	9	Unmodified	_RLNDTIQLL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	HCT116MG_D190212_S2	2	543.3190307617188	2	543.319306	1084.62406	0.46949	0.00025508	-0.15604	-8.4778E-05	0.31345	0.0001703	543.3189931852696	51.027	0.20738	50.848	50.706	50.914	-0.17868					9	3	3	0	0	0	0.041798	1	19569	19569		78.728	10.647	1	23797000			27830	6683	17696	17788	26720	26720					0.08513103397399391
RLNEKNYEL	9	Unmodified	_RLNEKNYEL_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	HCT116MG_D190212_S1	1	589.8123779296875	2	589.811845	1177.60914	0.52439	0.00030929	-0.33541	-0.00019783	0.18898	0.00011147	589.8116570280762	29.984	0.20737	29.984	29.893	30.1	0					5	3	2	0	0	0	0.090581	1	11012	11012		60.074	27.288	1	3738700			27831	1024	17697	17789	26721	26721					0.027436115293767216
RLNKVISEL	9	Unmodified	_RLNKVISEL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	536.329833984375	2	536.329673	1070.64479	0.80038	0.00042927	-0.34102	-0.0001829	0.45935	0.00024636	536.3294015376425	37.421	0.30138	37.421	37.249	37.55	0					17	5	4	0	0	0	0.01405	1	13982	13982		103.35	28.425	1	104050000			27832	5463	17698	17790	26722	26722					0.11229693777045213
RLNKVISEL	9	Unmodified	_RLNKVISEL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	357.88885498046875	3	357.888874	1070.64479	0.29869	0.0001069	-0.22741	-8.1387E-05	0.071281	2.5511E-05	357.8886756549278	37.41	0.19804	37.41	37.301	37.499	0					8	3	3	0	0	0	0.14171	1	13986	13986		38.615	6.5773	1	9028200			27833	5463	17698	17790	26723	26723					0.11229693777045213
RLNKVISEL	9	Unmodified	_RLNKVISEL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	357.888874	1070.64479	-0.34205	-0.00012242	-0.65081	-0.00023292	-0.99286	-0.00035533	357.8885948826041	37.464	0.20304	37.361	37.232	37.435	-0.10318	-0.024604	-0.00017701	NaN	38.615	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49342000			27834	5463	17698	17790							0.11229693777045213
RLNQTTFTA	9	Unmodified	_RLNQTTFTA_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	HCT116MG_D190212_S2	2	526.280029296875	2	526.28018	1050.54581	0.50406	0.00026528	0.18548	9.7615E-05	0.68954	0.00036289	526.280360486311	31.255	0.3097	30.988	30.716	31.025	-0.26704					7	5	2	0	0	0	0.29516	1	11526	11526		31.268	5.869	1	7041300			27835	6255	17699	17791	26724	26724					0.022556708121328484
RLNSFVLAR	9	Unmodified	_RLNSFVLAR_					0	0	0			REV__FMN2|p.S73L|1|0.27|ENSG00000155816|chr1:240092327-240092327|C/T|missense_variant	REV__FMN2|p.S73L|1|0.27|ENSG00000155816|chr1:240092327-240092327|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	359.2176208496094	3	359.217214	1074.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.873	1	36.873	36.373	37.373	0								0	0	0	0.76575	1	13758	13758		10.8	0	1		+		27836	16829	17700	17792	26725	26725					0.09548246699705487
RLPATGRAA	9	Unmodified	_RLPATGRAA_					0	0	0		ENST00000388948.7_2_15:101567474-101569278:+|nuORF	ENST00000388948.7_2_15:101567474-101569278:+|nuORF	ENST00000388948.7_2_15:101567474-101569278:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	456.1798095703125	2	456.772326	911.530098	0.20109	9.1853E-05	0.10553	4.8201E-05	0.30662	0.00014005	456.77227287328003	48.812	0.91109	48.669	48.388	49.299	-0.1437					43	17	4	0	0	0	0.26328	1	18609	18609		4.3292	1.7518	1	1040499999.9999999			27837	7588	17701	17793	26726	26726					0.07079429085752054
RLPAWQPLL	9	Unmodified	_RLPAWQPLL_					0	0	0		ENSG00000182107|ENST00000555868|TMEM30B	ENSG00000182107|ENST00000555868|TMEM30B	ENSG00000182107|ENST00000555868|TMEM30B	MSMS	HCT116MG_D190212_S2	2	547.329833984375	2	547.329476	1092.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.509	1	55.324	54.824	55.824	-0.18565								0	0	0	0.53872	1	21399	21399		26.884	0	1				27838	5654	17702	17794	26727	26727					0.10178318847852097
RLPDDDPTAV	10	Unmodified	_RLPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	HCT116MG_D190212_S1	1	549.7747192382812	2	549.774928	1097.5353	0.54463	0.00029942	-0.037623	-2.0684E-05	0.50701	0.00027874	549.7748142659225	30.352	0.81904	30.352	30.1	30.919	0					30	15	3	0	0	0	0.56431	1	11098	11098		30.703	12.557	1	14757000			27839	4383	17703	17795	26728	26728					-0.00956356632968891
RLPDDDPTAV	10	Unmodified	_RLPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	HCT116MG_D190212_S2	2	549.7744750976562	2	549.774928	1097.5353	0.22723	0.00012492	0.0043851	2.4108E-06	0.23161	0.00012733	549.774899920932	30.674	0.67162	30.407	30.148	30.819	-0.26704					24	12	2	0	0	0	0.029378	1	11242	11242		103.42	59.647	1	74622000			27840	4383	17703	17795	26729	26729					-0.00956356632968891
RLPDIPLRQV	10	Unmodified	_RLPDIPLRQV_					0	0	0		ENST00000523206.5_1_8:95850795-95884149:+|nuORF;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	603.869873046875	2	603.869497	1205.72444	0.26277	0.00015868	0.29389	0.00017747	0.55666	0.00033615	603.869615344498	42.297	0.25975	42.297	42.123	42.383	0					10	4	3	0	0	0	0.64623	1	15977	15977		24.882	7.4389	1	12053000			27841	4734	17704	17796	26730	26730					0.12980760451023343
RLPDIPLRQV	10	Unmodified	_RLPDIPLRQV_					0	0	0		ENST00000523206.5_1_8:95850795-95884149:+|nuORF;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	604.37255859375	2	603.869497	1205.72444	0.65489	0.00039547	-0.05922	-3.5761E-05	0.59567	0.00035971	603.8691336117025	42.297	0.311	42.229	42.068	42.379	-0.068199					11	5	3	0	0	0	0.048437	2	16018	15970;16018		88.364	54.919	1	40998000			27842	4734	17704	17796	26731;26732	26732					0.12980760451023343
RLPEAIEEV	9	Unmodified	_RLPEAIEEV_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF;ENST00000377824.8_1_9:37422741-37431094:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MSMS	HCT116MG_D190212_S1	1	528.2900390625	2	528.290214	1054.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.555	1	41.555	41.055	42.055	0								0	0	0	0.094105	1	15650	15650		57.722	0	1				27843	3462	17705	17797	26733	26733					0.04077421752072041
RLPEAIEEV	9	Unmodified	_RLPEAIEEV_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF;ENST00000377824.8_1_9:37422741-37431094:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-MSMS	HCT116MG_D190212_S2	2	528.290283203125	2	528.290214	1054.56587	0.53814	0.00028429	0.23224	0.00012269	0.77038	0.00040699	528.2902812977836	41.506	0.72205	41.437	41.191	41.913	-0.068199					24	13	3	0	0	0	0.0094709	1	15676	15676		114.65	14.85	1	25144000			27844	3462	17705	17797	26734	26734					0.04077421752072041
RLPETLPSL	9	Unmodified	_RLPETLPSL_					0	0	0		ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	513.3030395507812	2	513.303124	1024.5917	0.19265	9.889E-05	0.11371	5.8367E-05	0.30636	0.00015726	513.3029827172215	48.223	0.82454	48.223	47.893	48.717	0					30	15	3	0	0	0	0.026999	1	18295	18295		89.401	35.568	1	29309000			27845	2286	17706	17798	26735	26735					0.0803831599437217
RLPETLPSL	9	Unmodified	_RLPETLPSL_					0	0	0		ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	513.3036499023438	2	513.303124	1024.5917	0.43099	0.00022123	-0.2129	-0.00010928	0.21809	0.00011195	513.3028461534551	48.403	0.86256	48.26	47.779	48.642	-0.1437					31	16	3	0	0	0	0.071914	2	18456	18399;18456		63.961	14.406	1	74572000			27846	2286	17706	17798	26736;26737	26737					0.0803831599437217
RLPKRRKKPP	10	Unmodified	_RLPKRRKKPP_					0	0	0		nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	MSMS	HCT116MG_D190212_S2	2	638.4261474609375	2	638.427848	1274.84114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.474	1	39.396	38.896	39.896	-0.077835								0	0	0	0.96911	1	14858	14858		0.45834	0	1				27847	5902	17707	17799	26738	26738					0.2147154346143907
RLPRLIDKL	9	Unmodified	_RLPRLIDKL_					0	0	0			REV__ENSG00000147113|ENST00000398000|DIPK2B	REV__ENSG00000147113|ENST00000398000|DIPK2B	MSMS	HCT116MG_D190212_S1	1	375.2488708496094	3	375.248514	1122.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.101	1	56.101	55.601	56.601	0								0	0	0	0.76954	1	21559	21559		2.4985	1.5362	1		+		27848	12504	17708	17800	26739	26739					0.16725965801970233
RLPRLYLEV	9	Unmodified	_RLPRLYLEV_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MSMS	HCT116MG_D190212_S4	4	579.8513793945312	2	579.853316	1157.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.789	1	61.534	61.034	62.034	-0.25457								0	0	0	0.7701	1	23319	23319		0.52476	0	1		+		27849	10379	17709	17801	26740	26740					0.11953973048002808
RLPRRCVF	8	Unmodified	_RLPRRCVF_					0	0	0			REV__ENST00000402506.5_1_7:2566845-2567148:+|nuORF	REV__ENST00000402506.5_1_7:2566845-2567148:+|nuORF	MSMS	HCT116MG_D190212_S4	4	524.1452026367188	2	523.805645	1045.59674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.951	1	48.586	48.086	49.086	-0.365								0	0	0	0.8837	1	18141	18141		5.2307	0	1		+		27850	15397	17710	17802	26741	26741					0.07576341376011442
RLPTPPQEPD	10	Unmodified	_RLPTPPQEPD_					0	0	0			REV__ENST00000466831.2_1_13:24796959-24798912:+|nuORF	REV__ENST00000466831.2_1_13:24796959-24798912:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	575.2987670898438	2	575.29857	1148.58259	0.576	0.00033137	0.33629	0.00019347	0.91229	0.00052484	575.2987306247089	30.789	0.31223	30.789	30.711	31.023	0					9	5	3	0	0	0	0.73913	1	11328	11328		17.113	2.7075	1	6146700	+		27851	13737	17711	17803	26742	26742					0.014239226380595937
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	HCT116MG_D190212_S1	1	555.3012084960938	2	555.301113	1108.58767	0.64641	0.00035895	-0.22119	-0.00012283	0.42522	0.00023612	555.3008665075865	33.115	0.4145	33.115	32.933	33.348	0					11	7	2	0	0	0	0.28966	1	12263	12263		51.415	27.395	1	6598800			27852	2625	17712	17804	26743	26743					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	HCT116MG_D190212_S2	2	555.3017578125	2	555.301113	1108.58767	0.6624	0.00036783	-0.21949	-0.00012188	0.44291	0.00024595	555.3010900430986	33.392	0.41228	33.2	32.966	33.378	-0.19297					11	7	2	0	0	0	0.072018	1	12407	12407		79.596	45.195	1	23813000			27853	2625	17712	17804	26744	26744					0.037722265006550515
RLQEEINEV	9	Unmodified	_RLQEEINEV_					0	0	0		nc|ENSG00000166130|Q70UQ0|IKBIP;nc|ENSG00000166130|Q70UQ0-2|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	MSMS	HCT116MG_D190212_S1	1	565.2966918945312	2	565.296027	1128.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.186	1	33.186	32.686	33.686	0								0	0	0	0.050056	1	12272	12272		70.332	10.258	1				27854	9533	17713	17805	26745	26745					0.018356187754079656
RLQEEINEV	9	Unmodified	_RLQEEINEV_					0	0	0		nc|ENSG00000166130|Q70UQ0|IKBIP;nc|ENSG00000166130|Q70UQ0-2|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	MULTI-MSMS	HCT116MG_D190212_S3	3	565.29638671875	2	565.296027	1128.5775	0.47019	0.0002658	0.20703	0.00011703	0.67722	0.00038283	565.2960986829762	33.464	0.25463	33.174	33.049	33.304	-0.29013					6	4	2	0	0	0	0.13316	1	12308	12308		51.63	7.8574	1	9527800			27855	9533	17713	17805	26746	26746					0.018356187754079656
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	579.3296508789062	2	579.32987	1156.64519	-0.31995	-0.00018536	0.083499	4.8373E-05	-0.23645	-0.00013698	579.3298623799926	38.358	0.31269	38.358	38.123	38.436	0					11	5	3	0	0	0	0.0056012	1	14359	14359		132.38	10.846	1	43993000			27856	2909	17714	17806	26747	26747					0.07313068706230297
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	579.3298950195312	2	579.32987	1156.64519	0.35617	0.00020634	-0.19281	-0.0001117	0.16337	9.4643E-05	579.3297707689201	38.382	0.31343	38.289	38.115	38.428	-0.09301					13	5	3	0	0	0	0.0052024	1	14424	14424		135.86	10.826	1	85954000			27857	2909	17714	17806	26748	26748					0.07313068706230297
RLQESVMEA	9	Unmodified	_RLQESVMEA_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	HCT116MG_D190212_S1	1	531.7664794921875	2	531.766049	1061.51754	0.46642	0.00024803	0.21114	0.00011228	0.67755	0.0003603	531.7660404148626	31.05	0.26052	31.05	30.971	31.232	0					6	4	2	0	0	0	0.066823	1	11435	11435		66.457	16.524	1	6702400			27858	4719	17715	17807	26749	26749					-0.010753951594551836
RLQESVMEA	9	Unmodified	_RLQESVMEA_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7660522460938	2	531.766049	1061.51754	0.61977	0.00032957	-0.40294	-0.00021427	0.21684	0.00011531	531.7656423983027	31.318	0.31001	31.069	30.888	31.198	-0.24883					9	5	2	0	0	0	0.047849	1	11555	11555		75.761	17.082	1	22960000			27859	4719	17715	17807	26750	26750					-0.010753951594551836
RLQESVMEA	9	Unmodified	_RLQESVMEA_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	HCT116MG_D190212_S3	3	531.7661743164062	2	531.766049	1061.51754	0.42378	0.00022535	0.056241	2.9907E-05	0.48002	0.00025526	531.7659564785739	31.461	0.36541	31.19	31.012	31.378	-0.27028					12	6	3	0	0	0	0.034046	1	11499	11499		82.529	10.607	1	22399000			27860	4719	17715	17807	26751	26751					-0.010753951594551836
RLQESVMEA	9	Unmodified	_RLQESVMEA_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	HCT116MG_D190212_S4	4	532.267578125	2	531.766049	1061.51754	0.36592	0.00019458	0.26077	0.00013867	0.62668	0.00033325	531.7660729973461	31.576	0.31184	31.205	31.023	31.335	-0.37026					10	5	3	0	0	0	0.071914	1	11479	11479		63.961	14.028	1	6280300			27861	4719	17715	17807	26752	26752					-0.010753951594551836
RLQEVIETL	9	Unmodified	_RLQEVIETL_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;PSMD12|p.L48Pfs*21|1|0.1|ENSG00000197170|chr17:67357544-67357545|-/GG|frameshift_variant;ENST00000581618.1_1_17:65346414-65362695:-|nuORF	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S1	1	550.8192138671875	2	550.819138	1099.62372	0.59287	0.00032657	0.37269	0.00020528	0.96556	0.00053185	550.8190520608722	46.68	0.25946	46.68	46.543	46.803	0					11	4	3	0	0	0	0.0062667	1	17718	17718		126.57	11.917	1	39667000			27862	6126	17716	17808	26753	26753					0.07789683677515313
RLQEVIETL	9	Unmodified	_RLQEVIETL_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF;PSMD12|p.L48Pfs*21|1|0.1|ENSG00000197170|chr17:67357544-67357545|-/GG|frameshift_variant;ENST00000581618.1_1_17:65346414-65362695:-|nuORF	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	HCT116MG_D190212_S2	2	550.8194580078125	2	550.819138	1099.62372	0.86812	0.00047818	2.7012	0.0014879	3.5694	0.0019661	551.3225405440105	46.746	0.30891	46.635	46.42	46.729	-0.11121					12	5	4	0	0	0	0.066823	1	17831	17831		66.457	3.884	1	33572000			27863	6126	17716	17808	26754	26754					0.07789683677515313
RLQIKLPVLI	10	Unmodified	_RLQIKLPVLI_					0	0	0			REV__ENSG00000079393|ENST00000478873|DUSP13	REV__ENSG00000079393|ENST00000478873|DUSP13	MSMS	HCT116MG_D190212_S4	4	398.2746887207031	3	398.276181	1191.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.422	1	49.06	48.56	49.56	-0.36213								0	0	0	0.96804	1	18331	18331		0.69767	0	1		+		27864	10851	17717	17809	26755	26755					0.2184828252995885
RLQIKLPVLI	10	Unmodified	_RLQIKLPVLI_					0	0	0			REV__ENSG00000079393|ENST00000478873|DUSP13	REV__ENSG00000079393|ENST00000478873|DUSP13	MSMS	HCT116MG_D190212_S4	4	398.2746276855469	3	398.276181	1191.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.169	1	49.81	49.31	50.31	-0.35878								0	0	0	0.96804	1	18631	18631		0.69767	0	1		+		27865	10851	17717	17809	26756	26756					0.2184828252995885
RLQIKLPVLI	10	Unmodified	_RLQIKLPVLI_					0	0	0			REV__ENSG00000079393|ENST00000478873|DUSP13	REV__ENSG00000079393|ENST00000478873|DUSP13	MSMS	HCT116MG_D190212_S4	4	398.2748718261719	3	398.276181	1191.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.581	1	58.298	57.798	58.798	-0.28305								0	0	0	0.96804	1	22022	22022		0.69767	0	1		+		27866	10851	17717	17809	26757	26757					0.2184828252995885
RLQPLKKFIG	10	Unmodified	_RLQPLKKFIG_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MSMS	HCT116MG_D190212_S1	1	400.2574462890625	3	400.592281	1198.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.441	1	54.441	53.941	54.941	0								0	0	0	0.96337	1	20877	20877		1.7423	0	1		+		27867	12442	17718	17810	26758	26758					0.16358538836061598
RLQQLRLRRWR	11	Unmodified	_RLQQLRLRRWR_					0	0	0			REV__ENSG00000165355|ENST00000298097|FBXO33	REV__ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	HCT116MG_D190212_S1	1	528.3173828125	3	527.662203	1579.96478	0.36402	0.00019208	-0.3245	-0.00017123	0.039519	2.0853E-05	527.6622257774335	56.001	0.61652	56.001	55.709	56.326	0					20	11	3	0	0	0	0.74191	1	21470	21470		0.094841	0	1	8726800	+		27868	13051	17719	17811	26759	26759					0.19799594561732192
RLQRRLIRMRR	11	Unmodified	_RLQRRLIRMRR_					0	0	0			REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	777.491943359375	2	777.491519	1552.96848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.41	1	38.109	37.609	38.609	-0.30137								0	0	0	0.96149	1	14228	14228		0.30703	0	1		+		27869	17481	17720	17812	26760	26760					0.21411941063934137
RLQSKTIKV	9	Unmodified	_RLQSKTIKV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	HCT116MG_D190212_S2	2	358.232666015625	3	358.232752	1071.67643	-0.21793	-7.8068E-05	-0.10713	-3.8378E-05	-0.32506	-0.00011645	358.2326060176013	23.085	0.20813	22.7	22.57	22.778	-0.3852					6	3	2	0	0	0	0.33492	1	8240	8240		27.088	8.3671	1	13890000			27870	1166	17721	17813	26761	26761					0.14345686530987223
RLREEIEEL	9	Unmodified	_RLREEIEEL_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;nc|ENSG00000175727|Q9HAP2-2|MLXIP;ENSG00000175727|ENST00000319080|MLXIP	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;ENSG00000175727|ENST00000319080|MLXIP	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	593.8253173828125	2	593.824952	1185.63535	0.67807	0.00040266	-0.52078	-0.00030925	0.1573	9.3406E-05	593.8248277765898	36.743	0.20641	36.628	36.499	36.705	-0.11478					5	3	2	0	0	0	0.32978	1	13778	13778		27.629	3.6082	1	14686000			27871	3586;5393	17722	17814	26762	26762					0.04995880700857924
RLREQRQRRHY	11	Unmodified	_RLREQRQRRHY_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-3|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-3|PHLDB1	MSMS	HCT116MG_D190212_S3	3	799.4483642578125	2	799.448363	1596.88217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.061	1	39.759	39.259	40.259	-0.30137								0	0	0	0.96141	1	14860	14860		0.35063	0.043601	1		+		27872	10548	17723	17815	26763	26763					0.10760652762951395
RLRKAALA	8	Unmodified	_RLRKAALA_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	HCT116MG_D190212_S1	1	450.3076171875	2	449.800886	897.587219	-0.016418	-7.3847E-06	-0.28695	-0.00012907	-0.30337	-0.00013645	449.8007571218297	58.185	0.32809	58.185	58.085	58.413	0					9	6	2	0	0	0	0.88026	1	22408	22408		0	0	1	81221000			27873	3570	17724	17816	26764	26764					0.13432896362110114
RLRKAEEV	8	Unmodified	_RLRKAEEV_					0	0	0			REV__nc|ENSG00000129194|O60248-2|SOX15	REV__nc|ENSG00000129194|O60248-2|SOX15	MULTI-MSMS	HCT116MG_D190212_S1	1	500.7984619140625	2	500.79854	999.582528	0.23116	0.00011577	-0.23808	-0.00011923	-0.006924	-3.4675E-06	500.79814997532156	48.64	0.25739	48.64	48.46	48.717	0					9	4	3	0	0	0	0.46267	1	18523	18523		44.407	0	1	24409000	+		27874	11888	17725	17817	26765	26765					0.08271967428697735
RLRKRLLICFW	11	Unmodified	_RLRKRLLICFW_					0	0	0		ENST00000378251.2_1_1:3698128-3699238:-|nuORF	ENST00000378251.2_1_1:3698128-3699238:-|nuORF	ENST00000378251.2_1_1:3698128-3699238:-|nuORF	MSMS	HCT116MG_D190212_S2	2	501.9746398925781	3	501.974619	1502.90203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5102	1	1.497	0.99698	1.997	-0.013221								0	0	0	0.96208	1	486	486		0	0	1				27875	7540	17726	17818	26766	26766					0.17069312449393692
RLRNLLKLPKA	11	Unmodified	_RLRNLLKLPKA_					0	0	0		nc|ENSG00000183814|Q5TKA1-3|LIN9;ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	MSMS	HCT116MG_D190212_S4	4	441.297607421875	3	441.297868	1320.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.796	1	10.606	10.106	11.106	-0.18973								0	0	0	0.9619	1	3319	3319		0.094841	0	1				27876	5742	17727	17819	26767	26767					0.22417277055819795
RLRQRRRERIK	11	Unmodified	_RLRQRRRERIK_					0	0	0		DGCR2|p.E380K|1|0.24|ENSG00000070413|chr22:19041828-19041828|C/T|missense_variant	DGCR2|p.E380K|1|0.24|ENSG00000070413|chr22:19041828-19041828|C/T|missense_variant	DGCR2|p.E380K|1|0.24|ENSG00000070413|chr22:19041828-19041828|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	523.001220703125	3	523.001107	1565.98149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.153	1	56.853	56.353	57.353	-0.3004								0	0	0	0.96208	1	21445	21445		0	0	1				27877	666	17728	17820	26768	26768					0.22114095447682303
RLRRFMFLIL	10	Unmodified	_RLRRFMFLIL_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	MULTI-MSMS	HCT116MG_D190212_S2	2	682.9218139648438	2	682.92101	1363.82747	0.4592	0.0003136	1.2112	0.00082714	1.6704	0.0011407	682.9216953314825	59.641	0.30428	59.481	59.285	59.589	-0.16012					12	6	2	0	0	0	0.89248	1	23095	23095		0.45834	0.15131	1	11747000	+		27878	11933	17729	17821	26769	26769					0.16010549638008342
RLRRLEKKRRK	11	Unmodified	_RLRRLEKKRRK_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G	nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000006283|O43497-27|CACNA1G	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MSMS	HCT116MG_D190212_S1	1	770.0127563476562	2	770.013141	1538.01173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.704	1	47.704	47.204	48.204	0								0	0	0	0.96208	1	18133	18133		0	0	1				27879	1692;9361	17730	17822	26770	26770					0.26424454112861895
RLRRLLELWLL	11	Unmodified	_RLRRLLELWLL_					0	0	0			REV__ENST00000313755.9_1_22:18900690-18907344:-|nuORF	REV__ENST00000313755.9_1_22:18900690-18907344:-|nuORF	MSMS	HCT116MG_D190212_S3	3	740.9774169921875	2	740.97737	1479.94019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.4	1	35.101	34.601	35.601	-0.29922								0	0	0	0.96208	1	13065	13065		0	0	1		+		27880	11059	17731	17823	26771	26771					0.21941521635676509
RLRRRRRPRRQ	11	Unmodified	_RLRRRRRPRRQ_					0	0	0		ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	MSMS	HCT116MG_D190212_S4	4	803.51220703125	2	803.514706	1605.01486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.059	1	44.686	44.186	45.186	-0.37301								0	0	0	0.96208	1	16608	16608		0	0	1				27881	6973	17732	17824	26772	26772					0.2365514201028418
RLRSTSLVS	9	Unmodified	_RLRSTSLVS_					0	0	0			REV__ENST00000368608.3_1_6:116599484-116599676:-|nuORF	REV__ENST00000368608.3_1_6:116599484-116599676:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	509.8037414550781	2	509.803823	1017.59309	0.19548	9.9656E-05	0.34084	0.00017376	0.53632	0.00027342	509.80383995289566	46.753	2.0455	46.439	45.94	47.986	-0.31405					83	40	3	0	0	0	0.51829	1	17914	17914		15.847	1.0089	1	14799000	+		27882	15134	17733	17825	26773	26773					0.08499950083137264
RLRSTSLVS	9	Unmodified	_RLRSTSLVS_					0	0	0			REV__ENST00000368608.3_1_6:116599484-116599676:-|nuORF	REV__ENST00000368608.3_1_6:116599484-116599676:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	509.803823	1017.59309	0.31675	0.00016148	0.36263	0.00018487	0.67938	0.00034635	509.8037508404217	47.185	2.1092	46.814	45.875	47.984	-0.37038	0.21489	1.6143E-05	NaN	15.847	157	59	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34949000	+		27883	15134	17733	17825							0.08499950083137264
RLRTRKKRERH	11	Unmodified	_RLRTRKKRERH_					0	0	0		LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	768.4776000976562	2	768.476923	1534.93929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.454	1	55.454	54.954	55.954	0								0	0	0	0.96208	1	21295	21295		0	0	1				27884	9299	17734	17826	26774	26774					0.19322120039328183
RLRTRKKRERH	11	Unmodified	_RLRTRKKRERH_					0	0	0		LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	LMBRD1|p.L279R|1|0.13|ENSG00000168216|chr6:69713724-69713724|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	512.6538696289062	3	512.653708	1534.93929	0.33511	0.0001718	-0.49228	-0.00025237	-0.15717	-8.0574E-05	512.6536369420292	55.959	0.46213	55.774	55.587	56.049	-0.18565					21	8	3	0	0	0	0.74191	1	21613	21613		0	0	1	21441000			27885	9299	17734	17826	26775	26775					0.19322120039328183
RLRVVCFL	8	Unmodified	_RLRVVCFL_					0	0	0			REV__ENST00000502584.5_1_4:77952330-77952654:+|nuORF	REV__ENST00000502584.5_1_4:77952330-77952654:+|nuORF	MSMS	HCT116MG_D190212_S2	2	503.30316162109375	2	503.304947	1004.59534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.351	1	56.168	55.668	56.668	-0.18261								0	0	0	0.8837	1	21742	21742		2.5775	0	1		+		27886	16120	17735	17827	26776	26776					0.09322707287242338
RLSAGRVP	8	Unmodified	_RLSAGRVP_					0	0	0		NRCAM|p.N344Kfs*3|1|0.34|ENSG00000091129|chr7:108209464-108209464|G/-|frameshift_variant;NRCAM|p.A345Cfs*12|1|0.11|ENSG00000091129|chr7:108209463-108209464|-/A|frameshift_variant;NRCAM|p.F651Lfs*3|1|0.46|ENSG00000091129|chr7:108189730-108189730|G/-|frameshift_variant;NRCAM|p.I903Dfs*20|1|0.06|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant;nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	NRCAM|p.N344Kfs*3|1|0.34|ENSG00000091129|chr7:108209464-108209464|G/-|frameshift_variant	NRCAM|p.N344Kfs*3|1|0.34|ENSG00000091129|chr7:108209464-108209464|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	428.2853698730469	2	428.261594	854.508634	-0.11071	-4.7412E-05	-1.1279	-0.00048305	-1.2386	-0.00053046	428.2610169272498	48.793	0.51614	48.793	48.563	49.079	0					30	9	4	0	0	0	0.33503	1	18675	18675		1.8442	0	1	959370000			27887	1553	17736	17828	26777	26777					0.07556044057025701
RLSALDLERV	10	Unmodified	_RLSALDLERV_					0	0	0			REV__ENSG00000240857|ENST00000381249|RDH14	REV__ENSG00000240857|ENST00000381249|RDH14	MULTI-SECPEP	HCT116MG_D190212_S3	3	391.2841491699219	3	391.2313	1170.67207	0.05817	2.2758E-05	0.26338	0.00010304	0.32155	0.0001258	391.2313770204968	25.7	0.20827	25.572	25.442	25.65	-0.12795					5	3	2	0	0	0	0.31134	1	9218	9218		3.8763	0	1	2882700	+		27888	14353	17737	17829	26778	26778					0.09356177317408765
RLSEAIVTV	9	Unmodified	_RLSEAIVTV_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	HCT116MG_D190212_S2	2	494.29541015625	2	494.295299	986.576045	0.22184	0.00010965	0.40017	0.0001978	0.62201	0.00030745	494.2954455928525	41.079	0.25884	41.011	40.83	41.089	-0.068199					7	4	2	0	0	0	0.061422	1	15511	15511		69.105	3.8699	1	91237000			27889	4418	17738	17830	26779	26779					0.08222029477326487
RLSEAIVTV	9	Unmodified	_RLSEAIVTV_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MATCH	HCT116MG_D190212_S3	3		2	494.295299	986.576045	0.19026	9.4045E-05	-0.11109	-5.4913E-05	0.079168	3.9132E-05	494.2951422182204	41.297	0.1562	40.995	40.893	41.049	-0.30185	-0.025221	-0.00039724	NaN	69.105	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4475700			27890	4418	17738	17830							0.08222029477326487
RLSEFIPAVF	10	Unmodified	_RLSEFIPAVF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	HCT116MG_D190212_S1	1	589.832275390625	2	589.832049	1177.64954	0.59971	0.00035373	-0.19419	-0.00011454	0.40552	0.00023919	589.8319574324389	56.639	0.15463	56.639	56.531	56.686	0					6	2	3	0	0	0	0.42802	1	21793	21793		40.239	20.982	1	25154000			27891	4739	17739	17831	26780	26780					0.06782577919784671
RLSEFIPAVF	10	Unmodified	_RLSEFIPAVF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	HCT116MG_D190212_S2	2	589.8322143554688	2	589.832049	1177.64954	0.68026	0.00040124	-0.28069	-0.00016556	0.39958	0.00023568	589.8318399897314	56.734	0.1599	56.555	56.475	56.635	-0.17904					8	2	4	0	0	0	0.15126	1	21918	21918		63.961	44.704	1	58568000			27892	4739	17739	17831	26781	26781					0.06782577919784671
RLSETDFKV	9	Unmodified	_RLSETDFKV_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MSMS	HCT116MG_D190212_S1	1	547.7962036132812	2	547.795663	1093.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.044	1	36.044	35.544	36.544	0								0	0	0	0.2496	1	13427	13427		43.772	3.8151	1				27893	3950	17740	17832	26782	26782					0.03372824126358864
RLSETDFKV	9	Unmodified	_RLSETDFKV_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S2	2	547.7955322265625	2	547.795663	1093.57677	0.79638	0.00043625	-0.32685	-0.00017905	0.46953	0.00025721	547.7954677097689	36.07	0.20692	35.942	35.812	36.019	-0.12799					6	3	2	0	0	0	0.13424	1	13490	13490		51.415	13.24	1	27547000			27894	3950	17740	17832	26783	26783					0.03372824126358864
RLSKHGPG	8	Unmodified	_RLSKHGPG_					0	0	0		ACSBG2|p.I527Ffs*19|1|0.35|ENSG00000130377|chr19:6187315-6187315|C/-|frameshift_variant;ENSG00000130377|ENST00000588485|ACSBG2	ACSBG2|p.I527Ffs*19|1|0.35|ENSG00000130377|chr19:6187315-6187315|C/-|frameshift_variant	ACSBG2|p.I527Ffs*19|1|0.35|ENSG00000130377|chr19:6187315-6187315|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	426.2460021972656	2	426.245944	850.477334	0.13999	5.9668E-05	0.26105	0.00011127	0.40103	0.00017094	426.2459877880193	48.173	1.2891	47.806	47.419	48.708	-0.36728					74	32	4	0	0	0	0.87576	1	17738	17738		0.79363	0	1	129380000			27895	27	17741	17833	26784	26784					0.046114710229517186
RLSKIRVV	8	Unmodified	_RLSKIRVV_					0	0	0		ENST00000433284.1_1_22:49609931-49610129:-|nuORF	ENST00000433284.1_1_22:49609931-49610129:-|nuORF	ENST00000433284.1_1_22:49609931-49610129:-|nuORF	MSMS	HCT116MG_D190212_S2	2	485.8297424316406	2	485.829643	969.644734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.817	1	58.652	58.152	59.152	-0.1653								0	0	0	0.8837	1	22740	22740		2.0598	0	1				27896	7866	17742	17834	26785	26785					0.158697385677101
RLSRVAFSL	9	Unmodified	_RLSRVAFSL_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MSMS	HCT116MG_D190212_S1	1	524.8150024414062	2	524.816733	1047.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.251	1	54.251	53.751	54.751	0								0	0	0	0.76902	1	20798	20798		4.3292	0	1				27897	3659	17743	17835	26786	26786					0.09700844325402613
RLSVPLDPPL	10	Unmodified	_RLSVPLDPPL_					0	0	0			REV__ENST00000554736.5_1_14:52328042-52344361:+|nuORF	REV__ENST00000554736.5_1_14:52328042-52344361:+|nuORF	MSMS	HCT116MG_D190212_S4	4	553.8306274414062	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.978	1	47.609	47.109	48.109	-0.36907								0	0	0	0.94339	1	17753	17753		6.2058	2.2614	1		+		27898	16456	17744	17836	26787	26787					0.10094577919812764
RLTDRSVRRL	10	Unmodified	_RLTDRSVRRL_					0	0	0		tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	tr|U7STF6|U7STF6_FUSNUIntegrase/recombinaseXerDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01467PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	636.3878784179688	2	636.386377	1270.7582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.033	1	59.781	59.281	60.281	-0.25233								0	0	0	0.96453	1	22877	22877		1.4819	0	1				27899	18438	17745	17837	26788	26788					0.1336518194279961
RLTGEGRL	8	Unmodified	_RLTGEGRL_					0	0	0			REV__ENSG00000102313|ENST00000218436|ITIH6	REV__ENSG00000102313|ENST00000218436|ITIH6	MSMS	HCT116MG_D190212_S1	1	451.26629638671875	2	451.264333	900.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.298	1	22.298	21.798	22.798	0								0	0	0	0.8837	1	7888	7888		14.582	0	1		+		27900	11148	17746	17838	26789	26789					0.05987722848863086
RLTKHTKFV	9	Unmodified	_RLTKHTKFV_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-SECPEP	HCT116MG_D190212_S2	2	564.7294311523438	2	565.345658	1128.67676	0.43195	0.0002442	-0.31424	-0.00017765	0.11771	6.6546E-05	565.3454270196321	20.589	0.15953	20.21	20.076	20.236	-0.37949					4	2	2	0	0	0	0.26046	1	7206	7206		11.495	11.495	1	11275000			27901	3067	17747	17839	26790	26790					0.11757106250843208
RLTPKLMEV	9	Unmodified	_RLTPKLMEV_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	HCT116MG_D190212_S1	1	543.8208618164062	2	543.820627	1085.6267	0.20363	0.00011074	-0.031978	-1.739E-05	0.17165	9.3349E-05	543.8205953927688	38.922	0.31107	38.922	38.748	39.059	0					11	5	3	0	0	0	0.13424	1	14590	14590		51.415	17.014	1	44856000			27902	3997	17748	17840	26791	26791					0.08731235530672166
RLTPKLMEV	9	Unmodified	_RLTPKLMEV_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	HCT116MG_D190212_S2	2	543.8206176757812	2	543.820627	1085.6267	0.46986	0.00025552	-0.28959	-0.00015748	0.18028	9.8038E-05	543.8203807488356	38.916	0.25849	38.831	38.65	38.909	-0.084618					13	4	4	0	0	0	0.048237	1	14612	14612		75.571	33.731	1	225240000			27903	3997	17748	17840	26792	26792					0.08731235530672166
RLTPKLMEV	9	Unmodified	_RLTPKLMEV_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	HCT116MG_D190212_S3	3	543.8208618164062	2	543.820627	1085.6267	0.44347	0.00024117	-0.45232	-0.00024598	-0.0088561	-4.8161E-06	543.8204666591478	39.147	0.26279	38.846	38.716	38.979	-0.30137					7	4	2	0	0	0	0.14376	1	14535	14535		49.527	9.5775	1	10961000			27904	3997	17748	17840	26793	26793					0.08731235530672166
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(40)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-SECPEP	HCT116MG_D190212_S1	1	552.3199462890625	2	551.818084	1101.62162	0.64572	0.00035632	0.31694	0.00017489	0.96267	0.00053122	551.8181344119588	30.737	0.26011	30.737	30.555	30.815	0					6	4	2	0	0	0	0.18678	1	11301	11301		40.239	12.61	1	8779500			27905	3997	17748	17841	26794	26794		92			0.07486931668040597
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(59)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H;EIF3H|p.S183Pfs*5|1|0.05|ENSG00000147677|chr8:116657225-116657225|A/-|frameshift_variant	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	HCT116MG_D190212_S2	2	551.8181762695312	2	551.818084	1101.62162	0.3752	0.00020704	-0.055479	-3.0614E-05	0.31972	0.00017643	551.8179671228417	31.061	0.20701	30.794	30.663	30.87	-0.26704					9	3	3	0	0	0	0.095731	1	11460	11460		59.052	29.971	1	31302000			27906	3997	17748	17841	26795	26795		92			0.07486931668040597
RLVCLRWKELV	11	Unmodified	_RLVCLRWKELV_					0	0	0		ENST00000471501.1_1_1:11709834-11710766:-|nuORF;ENST00000466919.1_1_1:11710000-11714093:-|nuORF;FBXO2|p.A179Sfs*5|1|0.35|ENSG00000116661|chr1:11649861-11649862|-/T|frameshift_variant;ENSG00000116661|ENST00000354287|FBXO2	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	472.28369140625	3	472.28323	1413.82786	0.27153	0.00012824	0.61655	0.00029119	0.88809	0.00041943	472.2834692345488	52.721	1.1883	52.534	51.883	53.071	-0.18726					31	22	2	0	0	0	0.7388	1	20188	20188		7.4771	5.0423	1	20372000			27907	2523	17749	17842	26796	26796					0.13749924567173366
RLVCLRWKELV	11	Unmodified	_RLVCLRWKELV_					0	0	0		ENST00000471501.1_1_1:11709834-11710766:-|nuORF;ENST00000466919.1_1_1:11710000-11714093:-|nuORF;FBXO2|p.A179Sfs*5|1|0.35|ENSG00000116661|chr1:11649861-11649862|-/T|frameshift_variant;ENSG00000116661|ENST00000354287|FBXO2	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		3	472.28323	1413.82786	0.26103	0.00012328	0.80836	0.00038178	1.0694	0.00050506	472.28349440814884	52.408	0.41133	52.408	52.176	52.587	0	-0.16602	0.00012644	NaN	7.4771	20	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58726000			27908	2523	17749	17842							0.13749924567173366
RLVCLRWKELV	11	Unmodified	_RLVCLRWKELV_					0	0	0		ENST00000471501.1_1_1:11709834-11710766:-|nuORF;ENST00000466919.1_1_1:11710000-11714093:-|nuORF;FBXO2|p.A179Sfs*5|1|0.35|ENSG00000116661|chr1:11649861-11649862|-/T|frameshift_variant;ENSG00000116661|ENST00000354287|FBXO2	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	472.28323	1413.82786	0.30755	0.00014525	0.62831	0.00029674	0.93586	0.00044199	472.2834333839795	53.116	0.88475	52.781	52.515	53.4	-0.33473	0.20666	-0.00012866	NaN	7.4771	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5452500			27909	2523	17749	17842							0.13749924567173366
RLVDLSGGWDA	11	Unmodified	_RLVDLSGGWDA_					0	0	0		ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	MSMS	HCT116MG_D190212_S2	2	594.8037719726562	2	594.80402	1187.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.738	1	47.605	47.105	48.105	-0.13281								0	0	0	0.94864	1	18218	18218		7.0371	0.8313	1				27910	6867	17750	17843	26797	26797					0.007193250123464168
RLVEDVTA	8	Unmodified	_RLVEDVTA_					0	0	0			REV__ENSG00000143536|ENST00000271835|CRNN	REV__ENSG00000143536|ENST00000271835|CRNN	MULTI-MSMS	HCT116MG_D190212_S2	2	451.7514343261719	2	451.750724	901.486896	0.24347	0.00010999	0.19124	8.6394E-05	0.43471	0.00019638	451.75089551707714	23.865	0.20906	23.482	23.351	23.56	-0.38324					6	3	2	0	0	0	0.41924	1	8540	8540		48.346	4.4876	1	11253000	+		27911	12395	17751	17844	26798	26798					0.03221194517789172
RLVEGLAQV	9	Unmodified	_RLVEGLAQV_					0	0	0		nc|ENSG00000177238|Q6ZMU5-2|TRIM72;TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant;ENSG00000177238|ENST00000322122|TRIM72	nc|ENSG00000177238|Q6ZMU5-2|TRIM72	nc|ENSG00000177238|Q6ZMU5-2|TRIM72	MULTI-MSMS	HCT116MG_D190212_S2	2	492.795654296875	2	492.795466	983.57638	0.22201	0.00010941	-0.19357	-9.5391E-05	0.028439	1.4015E-05	492.7952812689471	40.082	0.25953	40.01	39.842	40.102	-0.072838					7	4	2	0	0	0	0.14362	1	15121	15121		49.554	3.8547	1	15301000			27912	5451	17752	17845	26799	26799					0.08393449197183145
RLVKKSRLLKF	11	Unmodified	_RLVKKSRLLKF_					0	0	0		tr|U7T485|U7T485_FUSNUMg2+transporter-C(MgtC)familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00380PE=3SV=1	tr|U7T485|U7T485_FUSNUMg2+transporter-C(MgtC)familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00380PE=3SV=1	tr|U7T485|U7T485_FUSNUMg2+transporter-C(MgtC)familyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00380PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	694.46630859375	2	694.466638	1386.91872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.742	1	60.476	59.976	60.976	-0.26582								0	0	0	0.96149	1	22895	22895		0.30703	0.071187	1				27913	18617	17753	17846	26800	26800					0.24074136606964203
RLVMETLLQTY	11	Unmodified	_RLVMETLLQTY_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	HCT116MG_D190212_S2	2	683.650390625	2	683.873588	1365.73262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.894	1	41.825	41.325	42.325	-0.068199								0	0	0	0.93295	1	15843	15843		15.248	7.093	1		+		27914	11857	17754	17847	26801	26801					0.06438526585498039
RLVSRRLKVP	10	Unmodified	_RLVSRRLKVP_					0	0	0		ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	MSMS	HCT116MG_D190212_S1	1	612.4050903320312	2	612.406581	1222.79861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.383	1	58.383	57.883	58.883	0								0	0	0	0.96521	1	22489	22489		1.3295	0	1				27915	5869	17755	17848	26802	26802					0.1961214833320355
RLWDLTTGTTT	11	Unmodified	_RLWDLTTGTTT_					0	0	0		ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENSG00000204628|ENST00000512805|RACK1	ENST00000502548.5_1_5:180666387-180669331:-|nuORF	ENST00000502548.5_1_5:180666387-180669331:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	632.83056640625	2	632.830234	1263.64592	0.47913	0.00030321	0.25643	0.00016228	0.73556	0.00046548	632.8301480110708	45.356	0.30974	45.264	45.101	45.411	-0.092476					8	5	2	0	0	0	0.53331	1	17286	17286		42.835	22.421	1	11244000			27916	6345	17756	17849	26803	26803					0.02463863355274043
RLWEEAVKA	9	Unmodified	_RLWEEAVKA_					0	0	0		ENST00000423931.1_1_3:192873384-192874521:-|nuORF;ENSG00000136451|ENST00000581208|VEZF1	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	551.30517578125	2	551.306198	1100.59784	0.53432	0.00029458	-0.023897	-1.3175E-05	0.51042	0.0002814	551.3061482432133	34.259	0.20863	34.259	34.128	34.337	0					6	3	2	0	0	0	0.062126	1	12720	12720		74.2	74.2	1	14520000			27917	3416	17757	17850	26804	26804					0.051568342258860866
RLWEEAVKA	9	Unmodified	_RLWEEAVKA_					0	0	0		ENST00000423931.1_1_3:192873384-192874521:-|nuORF;ENSG00000136451|ENST00000581208|VEZF1	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	ENST00000423931.1_1_3:192873384-192874521:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	551.3065795898438	2	551.306198	1100.59784	0.56887	0.00031362	0.44038	0.00024278	1.0093	0.00055641	551.3060872806043	34.379	0.41328	34.203	34.072	34.485	-0.17511					15	7	4	0	0	0	0.054316	1	12797	12797		87.258	45.419	1	64605000			27918	3416	17757	17850	26805	26805					0.051568342258860866
RLWEKLTLL	9	Unmodified	_RLWEKLTLL_					0	0	0		nc|ENSG00000130921|Q9H3J6-2|MTRFR;ENST00000538888.5_1_12:123738221-123738578:+|nuORF;ENSG00000130921|ENST00000253233|MTRFR	nc|ENSG00000130921|Q9H3J6-2|MTRFR	nc|ENSG00000130921|Q9H3J6-2|MTRFR	MULTI-MSMS	HCT116MG_D190212_S2	2	586.36376953125	2	586.363516	1170.71248	0.41784	0.000245	0.17539	0.00010284	0.59322	0.00034784	586.3635847734112	53.644	0.25873	53.454	53.325	53.584	-0.1894					9	4	3	0	0	0	0.15281	1	20652	20652		60.074	20.117	1	19078000			27919	3113	17758	17851	26806	26806					0.13395143707839452
RLWGEPVNL	9	Unmodified	_RLWGEPVNL_					0	0	0		USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant;USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant;ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000124486|Q93008-3|USP9X	USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant	USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	542.3001098632812	2	542.300916	1082.58728	0.41486	0.00022498	-0.87117	-0.00047244	-0.45631	-0.00024746	542.3002792048691	49.765	0.25822	49.765	49.595	49.853	0					6	4	2	0	0	0	0.061422	1	19006	19006		69.105	43.706	1	13213000			27920	2416	17759	17852	26807	26807					0.04928851571457926
RLWGEPVNL	9	Unmodified	_RLWGEPVNL_					0	0	0		USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant;USP9X|p.Y1953Mfs*7|1|0.72|ENSG00000124486|chrX:41216419-41216419|T/-|frameshift_variant;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;USP9X|p.K2377*|1|0.88|ENSG00000124486|chrX:41229318-41229319|-/T|frameshift_variant;ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000124486|Q93008-3|USP9X	USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant	USP9X|p.K1773Nfs*9|1|0.28|ENSG00000124486|chrX:41214693-41214693|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	542.3006591796875	2	542.300916	1082.58728	0.15407	8.3551E-05	0.51281	0.0002781	0.66687	0.00036165	542.3013046453704	49.914	0.35727	49.75	49.585	49.942	-0.16369					10	6	2	0	0	0	0.030723	1	19149	19149		85.642	29.464	1	34335000			27921	2416	17759	17852	26808	26808					0.04928851571457926
RLWHWYQRRL	10	Unmodified	_RLWHWYQRRL_					0	0	0			REV__ENST00000513055.1_1_5:92921088-92921313:-|nuORF	REV__ENST00000513055.1_1_5:92921088-92921313:-|nuORF	MSMS	HCT116MG_D190212_S4	4	757.4161987304688	2	757.418011	1512.82147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.067	1	55.761	55.261	56.261	-0.30626								0	0	0	0.96937	1	21008	21008		0.40072	0.050084	1		+		27922	16193	17760	17853	26809	26809					0.08557167450658199
RLWNETVEL	9	Unmodified	_RLWNETVEL_					0	0	0		nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B	nc|ENSG00000035499|Q8WUY9-2|DEPDC1B	nc|ENSG00000035499|Q8WUY9-2|DEPDC1B	MULTI-MSMS	HCT116MG_D190212_S1	1	580.30908203125	2	580.308938	1158.60332	0.42839	0.0002486	-0.24603	-0.00014277	0.18237	0.00010583	580.3088806308607	49.601	0.20692	49.601	49.492	49.699	0					5	3	2	0	0	0	0.17622	1	18938	18938		43.772	7.6454	1	13829000			27923	981	17761	17854	26810	26810					0.030365130177187893
RLWNETVEL	9	Unmodified	_RLWNETVEL_					0	0	0		nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B	nc|ENSG00000035499|Q8WUY9-2|DEPDC1B	nc|ENSG00000035499|Q8WUY9-2|DEPDC1B	MULTI-MSMS	HCT116MG_D190212_S2	2	580.3084106445312	2	580.308938	1158.60332	0.10973	6.3675E-05	0.09224	5.3528E-05	0.20197	0.0001172	580.308720608178	49.737	0.35648	49.573	49.33	49.686	-0.16369					9	6	2	0	0	0	0.061422	1	19061	19061		69.105	14.331	1	32208000			27924	981	17761	17854	26811	26811					0.030365130177187893
RLWNMPENNGL	11	Unmodified	_RLWNMPENNGL_					0	0	0		nc|ENSG00000138231|Q9UK59-2|DBR1;ENSG00000138231|ENST00000260803|DBR1	nc|ENSG00000138231|Q9UK59-2|DBR1	nc|ENSG00000138231|Q9UK59-2|DBR1	MULTI-MSMS	HCT116MG_D190212_S2	2	672.3300170898438	2	672.329879	1342.6452	0.49754	0.00033451	0.78611	0.00052853	1.2837	0.00086304	672.3307854330784	47.484	0.41299	47.362	47.078	47.491	-0.12175					11	7	3	0	0	0	0.025539	1	18146	18146		128.57	97.305	1	16688000			27925	3544	17762	17855	26812	26812					-0.012412545654115092
RLWPKIQGL	9	Unmodified	_RLWPKIQGL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	HCT116MG_D190212_S1	1	556.3448486328125	2	555.842751	1109.67095	0.55875	0.00031058	-0.4383	-0.00024363	0.12044	6.6948E-05	555.8424622939774	46.442	0.62067	46.442	46.182	46.803	0					19	11	2	0	0	0	0.0046012	1	17622	17622		141.83	87.994	1	16964000			27926	4989	17763	17856	26813	26813					0.12050007739162538
RLWPKIQGL	9	Unmodified	_RLWPKIQGL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	HCT116MG_D190212_S2	2	555.8424682617188	2	555.842751	1109.67095	0.57557	0.00031992	-0.070318	-3.9086E-05	0.50525	0.00028084	555.8426317467544	46.561	0.67007	46.45	46.059	46.729	-0.11122					30	12	4	0	0	0	0.0090481	1	17689	17689		115.69	64.837	1	85616000			27927	4989	17763	17856	26814	26814					0.12050007739162538
RLWTEIPTAI	10	Unmodified	_RLWTEIPTAI_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.N1746Tfs*30|1|0.2|ENSG00000096433|chr6:33684872-33684872|A/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	600.3423461914062	2	600.342781	1198.67101	0.65112	0.00039089	-0.3491	-0.00020958	0.30202	0.00018131	600.3422711963727	54.16	0.20593	53.971	53.842	54.048	-0.1894					9	3	3	0	0	0	0.037651	1	20868	20868		96.367	58.191	1	47968000			27928	1619	17764	17857	26815	26815					0.07961962948502332
RLYDGLFKVI	10	Unmodified	_RLYDGLFKVI_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	612.3607788085938	2	612.360973	1222.70739	0.47736	0.00029232	-0.33012	-0.00020215	0.14724	9.0165E-05	612.3605613607988	54.474	0.30638	54.284	54.048	54.354	-0.1894					8	5	3	0	0	0	0.055088	1	20993	20993		83.429	19.468	1	44266000			27929	4969	17765	17858	26816	26816					0.10494839845227943
RLYGDDATYL	10	Unmodified	_RLYGDDATYL_					0	0	0		TIAM1|p.Q528Rfs*36|1|0.37|ENSG00000156299|chr21:31245491-31245491|A/-|frameshift_variant;nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	TIAM1|p.Q528Rfs*36|1|0.37|ENSG00000156299|chr21:31245491-31245491|A/-|frameshift_variant	TIAM1|p.Q528Rfs*36|1|0.37|ENSG00000156299|chr21:31245491-31245491|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	593.7904663085938	2	593.790578	1185.5666	0.80797	0.00047976	-0.60435	-0.00035886	0.20362	0.00012091	593.790261189502	41.608	0.30863	41.54	41.396	41.705	-0.068199					7	5	2	0	0	0	0.73519	1	15749	15749		17.443	7.3687	1	11866000			27930	4281	17766	17859	26817	26817					-0.01875783598848102
RLYPEGLAQL	10	Unmodified	_RLYPEGLAQL_					0	0	0		ENST00000563305.1_1_16:67472744-67473248:-|nuORF;ENSG00000159720|ENST00000290949|ATP6V0D1	ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENST00000563305.1_1_16:67472744-67473248:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	580.32763671875	2	580.327131	1158.63971	0.33986	0.00019723	0.23781	0.00013801	0.57767	0.00033524	580.3272455998691	48.467	0.25736	48.467	48.357	48.614	0					8	4	2	0	0	0	0.038098	1	18464	18464		121.53	60.177	1	10617000			27931	4422	17767	17860	26818	26818					0.0667338991440829
RLYPEGLAQL	10	Unmodified	_RLYPEGLAQL_					0	0	0		ENST00000563305.1_1_16:67472744-67473248:-|nuORF;ENSG00000159720|ENST00000290949|ATP6V0D1	ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENST00000563305.1_1_16:67472744-67473248:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	580.327131	1158.63971	0.59134	0.00034317	-0.036555	-2.1214E-05	0.55478	0.00032196	580.3272058429376	48.64	0.30417	48.496	48.338	48.642	-0.1437	0.014734	-0.00029768	NaN	121.53	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39562000			27932	4422	17767	17860							0.0667338991440829
RLYPWGVVEV	10	Unmodified	_RLYPWGVVEV_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	HCT116MG_D190212_S2	2	609.33740234375	2	609.337498	1216.66044	0.57696	0.00035156	0.10178	6.202E-05	0.67874	0.00041358	609.3374885430483	55.342	0.25542	55.154	55.07	55.326	-0.18762					9	4	3	0	0	0	0.5682	1	21360	21360		41.956	28.05	1	23145000			27933	5004	17768	17861	26819	26819					0.06077980294094232
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	552.811767578125	2	552.811648	1103.60874	0.29411	0.00016259	0.036634	2.0252E-05	0.33074	0.00018284	552.8115439389244	39.741	0.2597	39.741	39.605	39.865	0					11	4	3	0	0	0	0.027492	1	14924	14924		88.904	7.0134	1	42176000			27934	1601	17769	17862	26820	26820					0.061082366001983246
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant;MSH2|p.M813Nfs*11|1|0.17|ENSG00000095002|chr2:47478497-47478498|-/A|frameshift_variant;nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MSH2|p.T806Kfs*4|1|0.2|ENSG00000095002|chr2:47478472-47478478|CACTCAC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	552.8110961914062	2	552.811648	1103.60874	0.13857	7.6605E-05	-0.12625	-6.9792E-05	0.012323	6.8125E-06	552.8113612921119	39.786	0.25768	39.713	39.584	39.842	-0.072838					11	4	3	0	0	0	0.027492	1	14987	14987		88.904	7.0134	1	86045000			27935	1601	17769	17862	26821	26821					0.061082366001983246
RLYSSGKL	8	Unmodified	_RLYSSGKL_					0	0	0		ENSG00000103740|ENST00000258873|ACSBG1	ENSG00000103740|ENST00000258873|ACSBG1	ENSG00000103740|ENST00000258873|ACSBG1	MSMS	HCT116MG_D190212_S2	2	462.2698669433594	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.195	1	58.024	57.524	58.524	-0.1703								0	0	0	0.8837	1	22484	22484		2.5775	0	1				27936	1907	17770	17863	26822	26822					0.0592549113438281
RLYTEPLLV	9	Unmodified	_RLYTEPLLV_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MSMS	HCT116MG_D190212_S2	2	552.3268432617188	2	552.326599	1102.63865	0.34025	0.00018793	0.45045	0.00024879	0.7907	0.00043673	552.3266362216269	51.171	0.31023	50.992	50.81	51.12	-0.17868					11	5	3	0	0	0	0.016701	1	19616	19616		99.799	27.877	1	40748000			27937	2827;9443	17771	17864	26823	26823					0.09143175545523263
RLYTEPLLV	9	Unmodified	_RLYTEPLLV_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MATCH	HCT116MG_D190212_S1	1		2	552.326599	1102.63865	0.31621	0.00017465	-0.68822	-0.00038012	-0.37201	-0.00020547	552.3261351443172	50.989	0.56879	50.989	50.626	51.194	0	-0.0012384	-0.00088311	NaN	99.799	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15341000			27938	2827;9443	17771	17864							0.09143175545523263
RLYWLYWQDWF	11	Unmodified	_RLYWLYWQDWF_					0	0	0			REV__ENST00000488825.5_1_3:123813684-123881061:+|nuORF	REV__ENST00000488825.5_1_3:123813684-123881061:+|nuORF	MSMS	HCT116MG_D190212_S4	4	838.4065551757812	2	838.406444	1674.79833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.283	1	19.096	18.596	19.596	-0.18674								0	0	0	0.96121	1	6530	6530		1.3295	1.3295	1		+		27939	16016	17772	17865	26824	26824					-0.012073161773287211
RLYWLYWQDWF	11	Unmodified	_RLYWLYWQDWF_					0	0	0			REV__ENST00000488825.5_1_3:123813684-123881061:+|nuORF	REV__ENST00000488825.5_1_3:123813684-123881061:+|nuORF	MSMS	HCT116MG_D190212_S4	4	838.4061889648438	2	838.406444	1674.79833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.935	1	19.741	19.241	20.241	-0.19367								0	0	0	0.95954	1	6793	6793		3.2813	2.9743	1		+		27940	16016	17772	17865	26825	26825					-0.012073161773287211
RMAPALSGA	9	Unmodified	_RMAPALSGA_					0	0	0		ENST00000574593.1_1_16:2817540-2819884:+|nuORF;SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2	ENST00000574593.1_1_16:2817540-2819884:+|nuORF	ENST00000574593.1_1_16:2817540-2819884:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	437.2339172363281	2	437.234187	872.453822	0.27127	0.00011861	-0.38723	-0.00016931	-0.11596	-5.0702E-05	437.23411257095984	29.409	0.25777	29.108	28.979	29.237	-0.30095					6	4	2	0	0	0	0.31596	1	10807	10807		29.082	5.061	1	8525500			27941	4967	17773	17866	26826	26826					0.012492891941064954
RMAVLNEQV	9	Unmodified	_RMAVLNEQV_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2847290039062	2	530.284408	1058.55426	0.33694	0.00017867	0.13599	7.2115E-05	0.47293	0.00025079	530.2842802421736	37.751	0.20881	37.751	37.602	37.811	0					5	3	2	0	0	0	0.19461	1	14134	14134		41.84	5.7954	1	5332800			27942	3211	17774	17867	26827	26827					0.027329014571023436
RMDCSGDG	8	Unmodified	_RMDCSGDG_					0	0	0			REV__FLNA|p.V633M|1|0.43|ENSG00000196924|chrX:154364651-154364651|C/T|missense_variant	REV__FLNA|p.V633M|1|0.43|ENSG00000196924|chrX:154364651-154364651|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	840.7992553710938	1	840.297463	839.290187	0.73273	0.00061571	0.69595	0.00058481	1.4287	0.0012005	840.2979960553665	20.632	0.57181	20.43	20.04	20.612	-0.20133					13	10	2	0	0	0	0.32291	1	7070	7070		11.64	9.3376	1	1400700	+		27943	16827	17775	17868	26828	26828					-0.13588676639085406
RMDIEQSLY	9	Unmodified	_RMDIEQSLY_					0	0	0		SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	578.2809448242188	2	577.779156	1153.54376	0.35298	0.00020394	-0.30933	-0.00017872	0.043646	2.5218E-05	577.7788699926169	42.149	0.20784	42.149	42.019	42.226	0					6	3	2	0	0	0	0.066823	1	15907	15907		66.457	29.95	1	21274000			27944	1821	17776	17869	26829	26829					-0.026871259879726495
RMDIEQSLY	9	Unmodified	_RMDIEQSLY_					0	0	0		SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	577.7794799804688	2	577.779156	1153.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.446	1	42.142	41.642	42.642	-0.30352								0	0	0	0.47756	1	15812	15812		29.841	4.4413	1				27945	1821	17776	17869	26830	26830					-0.026871259879726495
RMDIEQSLY	9	Unmodified	_RMDIEQSLY_					0	0	0		SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	SMARCA1|p.K851Nfs*33|1|0.67|ENSG00000102038|chrX:129471216-129471216|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	577.7791748046875	2	577.779156	1153.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.512	1	42.136	41.636	42.636	-0.37565								0	0	0	0.47756	1	15627	15627		29.841	4.4413	1				27946	1821	17776	17869	26831	26831					-0.026871259879726495
RMDYPVFTV	9	Unmodified	_RMDYPVFTV_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	HCT116MG_D190212_S2	2	564.28125	2	564.281334	1126.54812	0.4525	0.00025534	-0.30057	-0.0001696	0.15193	8.5731E-05	564.2811599443125	52.835	0.46425	52.646	52.397	52.861	-0.18922					19	8	3	0	0	0	0.016744	1	20287	20287		99.755	55.897	1	31092000			27947	1561	17777	17870	26832	26832					-0.01009616774422284
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	HCT116MG_D190212_S1	1	549.7921752929688	2	549.791869	1097.56919	0.40826	0.00022446	-0.236	-0.00012975	0.17227	9.471E-05	549.7916841771573	42.927	0.31256	42.927	42.795	43.108	0					15	5	4	0	0	0	0.060947	1	16209	16209		85.642	45.684	1	50049000			27948	4147	17778	17871	26833	26833					0.02430393325107616
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	HCT116MG_D190212_S2	2	549.7921752929688	2	549.791869	1097.56919	0.37451	0.0002059	0.37004	0.00020344	0.74455	0.00040935	549.7918882550555	42.939	0.46253	42.869	42.689	43.152	-0.069984					12	8	2	0	0	0	0.060947	1	16267	16267		85.642	53.336	1	198640000			27949	4147	17778	17871	26834	26834					0.02430393325107616
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MSMS	HCT116MG_D190212_S2	2	366.8634948730469	3	366.863672	1097.56919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.974	1	42.904	42.404	43.404	-0.069984								0	0	0	0.053528	1	16281	16281		69.338	54.381	1				27950	4147	17778	17871	26835	26835					0.02430393325107616
RMFDGKFVVA	10	Unmodified	_RMFDGKFVVA_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	HCT116MG_D190212_S1	1	585.3106079101562	2	585.310426	1168.6063	0.871	0.00050981	-0.34984	-0.00020477	0.52116	0.00030504	585.3102096101867	41.419	0.2606	41.419	41.289	41.55	0					9	4	3	0	0	0	0.099369	1	15617	15617		74.2	51.463	1	27323000			27951	4147	17779	17872	26836	26836					0.02874064870889015
RMFDGKFVVA	10	Unmodified	_RMFDGKFVVA_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	HCT116MG_D190212_S2	2	585.3106079101562	2	585.310426	1168.6063	0.59961	0.00035096	0.18496	0.00010826	0.78456	0.00045921	585.310651356231	41.439	0.30676	41.371	41.242	41.549	-0.068199					11	5	3	0	0	0	0.041964	1	15659	15659		93.166	67.767	1	147170000			27952	4147	17779	17872	26837	26837					0.02874064870889015
RMFGIPVVV	9	Unmodified	_RMFGIPVVV_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;ENST00000413059.1_1_X:57419493-57419883:-|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S1	1	509.2994079589844	2	509.29933	1016.58411	0.41728	0.00021252	-0.43914	-0.00022365	-0.021861	-1.1134E-05	509.29905564847746	55.837	0.30744	55.837	55.606	55.913	0					6	5	2	0	0	0	0.2682	1	21478	21478		34.102	9.4286	1	41070000			27953	1727	17780	17873	26838	26838					0.07647885193114234
RMHLFVLHL	9	Unmodified	_RMHLFVLHL_					0	0	0		AVPR1B|p.L140Cfs*38|1|0.27|ENSG00000198049|chr1:206116473-206116473|G/-|frameshift_variant;ENSG00000198049|ENST00000367126|AVPR1B	AVPR1B|p.L140Cfs*38|1|0.27|ENSG00000198049|chr1:206116473-206116473|G/-|frameshift_variant	AVPR1B|p.L140Cfs*38|1|0.27|ENSG00000198049|chr1:206116473-206116473|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	389.22808837890625	3	389.226944	1164.659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.929	1	23.671	23.171	24.171	-0.25816								0	0	0	0.76967	1	8404	8404		1.0715	0	1				27954	237	17781	17874	26839	26839					0.0832606772435156
RMIDIQTRM	9	Unmodified	_RMIDIQTRM_					0	0	0		ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF	ENSG00000071462|ENST00000265758|BUD23	ENSG00000071462|ENST00000265758|BUD23	MULTI-MSMS	HCT116MG_D190212_S1	1	582.3048706054688	2	582.304818	1162.59508	0.55886	0.00032543	-0.79394	-0.00046231	-0.23508	-0.00013689	582.3045491771722	36.176	0.26702	36.176	36.098	36.365	0					9	4	3	0	0	0	0.011034	1	13502	13502		110.79	56.96	1	15129000			27955	1254	17782	17875	26840	26840					0.02028919505050908
RMIDIQTRM	9	Unmodified	_RMIDIQTRM_					0	0	0		ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23;nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF	ENSG00000071462|ENST00000265758|BUD23	ENSG00000071462|ENST00000265758|BUD23	MULTI-MSMS	HCT116MG_D190212_S2	2	582.3048095703125	2	582.304818	1162.59508	0.73468	0.00042781	-0.57802	-0.00033658	0.15667	9.1228E-05	582.3045957592415	36.227	0.25884	36.099	35.967	36.226	-0.12799					16	4	5	0	0	0	0.0095327	1	13565	13565		114.5	51.269	1	72119000			27956	1254	17782	17875	26841	26841					0.02028919505050908
RMIRSHGRK	9	Unmodified	_RMIRSHGRK_					0	0	0		sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2;sp|F5HAE6|UL15A_HCMVMUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL15APE=3SV=1	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	MSMS	HCT116MG_D190212_S1	1	380.8913269042969	3	380.889214	1139.64581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.25958	1	0.25958	-0.24042	0.75958	0								0	0	0	0.7701	1	93	93		0.23584	0	1				27957	18190	17783	17876	26842	26842					0.08157629664970045
RMIRSHGRK	9	Unmodified	_RMIRSHGRK_					0	0	0		sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2;sp|F5HAE6|UL15A_HCMVMUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL15APE=3SV=1	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	MSMS	HCT116MG_D190212_S1	1	380.8908386230469	3	380.889214	1139.64581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8981	1	1.8981	1.3981	2.3981	0								0	0	0	0.7701	1	572	572		0.23584	0	1				27958	18190	17783	17876	26843	26843					0.08157629664970045
RMIRSHGRK	9	Unmodified	_RMIRSHGRK_					0	0	0		sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2;sp|F5HAE6|UL15A_HCMVMUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL15APE=3SV=1	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	MSMS	HCT116MG_D190212_S1	1	380.890625	3	380.889214	1139.64581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5643	1	2.5643	2.0643	3.0643	0								0	0	0	0.7701	1	765	765		0.23584	0	1				27959	18190	17783	17876	26844	26844					0.08157629664970045
RMIRSHGRK	9	Unmodified	_RMIRSHGRK_					0	0	0		sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2;sp|F5HAE6|UL15A_HCMVMUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL15APE=3SV=1	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	MSMS	HCT116MG_D190212_S1	1	380.89080810546875	3	380.889214	1139.64581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9165	1	3.9165	3.4165	4.4165	0								0	0	0	0.7701	1	1177	1177		0.23584	0	1				27960	18190	17783	17876	26845	26845					0.08157629664970045
RMIRSHGRK	9	Unmodified	_RMIRSHGRK_					0	0	0		sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2;sp|F5HAE6|UL15A_HCMVMUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL15APE=3SV=1	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	sp|P16844|UL15A_HCMVAUncharacterizedproteinUL15AOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL15APE=3SV=2	MSMS	HCT116MG_D190212_S1	1	380.89056396484375	3	380.889214	1139.64581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9801	1	8.9801	8.4801	9.4801	0								0	0	0	0.7701	1	2717	2717		0.23584	0	1				27961	18190	17783	17876	26846	26846					0.08157629664970045
RMKKKKKKKK	10	Unmodified	_RMKKKKKKKK_					0	0	0			REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF	REV__ENST00000367558.5_1_1:182569199-182569457:-|nuORF	MSMS	HCT116MG_D190212_S4	4	444.31207275390625	3	444.311231	1329.91186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.16	1	39.781	39.281	40.281	-0.37936								0	0	0	0.97116	1	14724	14724		0	0	1		+		27962	15125	17784	17877	26847	26847					0.260105004547313
RMKKKKMLATL	11	Unmodified	_RMKKKKMLATL_					0	0	0		ENST00000452510.6_2_5:134102740-134109419:+|nuORF	ENST00000452510.6_2_5:134102740-134109419:+|nuORF	ENST00000452510.6_2_5:134102740-134109419:+|nuORF	MSMS	HCT116MG_D190212_S1	1	449.94927978515625	3	449.949082	1346.82542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.937	1	11.937	11.437	12.437	0								0	0	0	0.96208	1	3800	3800		0	0	1				27963	7994	17785	17878	26848	26848					0.1658775283790419
RMLEDRDLFVM	11	Unmodified	_RMLEDRDLFVM_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	HCT116MG_D190212_S1	1	713.3569946289062	2	712.854872	1423.69519	0.57948	0.00041308	-0.50671	-0.00036121	0.072769	5.1874E-05	712.854632620987	50.91	0.20667	50.91	50.781	50.988	0					8	3	3	0	0	0	2.9679E-05	1	19449	19449		164.85	138.58	1	17118000			27964	2119	17786	17879	26849	26849					0.00029112048196111573
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	HCT116MG_D190212_S1	1	489.2713623046875	2	489.271104	976.527655	0.28354	0.00013873	0.30402	0.00014875	0.58756	0.00028748	489.27118878275206	29.763	0.52052	29.763	29.425	29.945	0					20	9	3	0	0	0	0.043314	1	10891	10891		77.984	47.76	1	40839000			27965	2517	17787	17880	26850	26850					0.03845257356431375
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	HCT116MG_D190212_S2	2	489.2708740234375	2	489.271104	976.527655	-0.093325	-4.5661E-05	-0.22874	-0.00011192	-0.32207	-0.00015758	489.2709369374887	30.231	0.41175	29.946	29.718	30.13	-0.28453					20	7	4	0	0	0	0.026974	1	11108	11108		89.427	53.383	1	282080000			27966	2517	17787	17880	26851	26851					0.03845257356431375
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	HCT116MG_D190212_S3	3	489.2711486816406	2	489.271104	976.527655	0.18064	8.8381E-05	0.25501	0.00012477	0.43565	0.00021315	489.27118027609214	30.189	0.41975	29.939	29.65	30.069	-0.24946					15	7	3	0	0	0	0.043314	1	11016	11016		77.984	77.984	1	41503000			27967	2517	17787	17880	26852	26852					0.03845257356431375
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MSMS	HCT116MG_D190212_S4	4	489.2709655761719	2	489.271104	976.527655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.423	1	30.066	29.566	30.566	-0.3571								0	0	0	0.084787	1	11025	11025		60.39	22.416	1				27968	2517	17787	17880	26853	26853					0.03845257356431375
RMLQVLVLPLI	11	Unmodified	_RMLQVLVLPLI_					0	0	0		SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	432.2801513671875	3	432.280826	1293.82065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.432	1	53.432	52.932	53.932	0								0	0	0	0.96111	1	20463	20463		0.50596	0.051438	1				27969	18157	17788	17881	26854	26854					0.18549191966758372
RMLQVLVLPLI	11	Unmodified	_RMLQVLVLPLI_					0	0	0		SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	432.2802429199219	3	432.280826	1293.82065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.222	1	50.871	50.371	51.371	-0.35028								0	0	0	0.96111	1	19056	19056		0.50596	0.051438	1				27970	18157	17788	17881	26855	26855					0.18549191966758372
RMLQVLVLPLI	11	Unmodified	_RMLQVLVLPLI_					0	0	0		SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	432.2801208496094	3	432.280826	1293.82065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.796	1	51.447	50.947	51.947	-0.34935								0	0	0	0.96111	1	19288	19288		0.50596	0.34663	1				27971	18157	17788	17881	26856	26856					0.18549191966758372
RMLQVLVLPLI	11	Unmodified	_RMLQVLVLPLI_					0	0	0		SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	SLC1A3|p.M94V|1|0.16|ENSG00000079215|chr5:36629548-36629548|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	432.28033447265625	3	432.280826	1293.82065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.994	1	52.655	52.155	53.155	-0.33872								0	0	0	0.96111	1	19772	19772		0.50596	0.34663	1				27972	18157	17788	17881	26857	26857					0.18549191966758372
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	432.88525390625	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.9351	1	0.9351	0.4351	1.4351	0								0	0	0	0.97116	1	278	278		0	0	1				27973	427	17789	17882	26858	26858					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	432.8850402832031	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.481	1	1.481	0.98098	1.981	0								0	0	0	0.97116	1	439	439		0	0	1				27974	427	17789	17882	26859	26859					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	432.88507080078125	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.9658	1	2.9658	2.4658	3.4658	0								0	0	0	0.97116	1	890	890		0	0	1				27975	427	17789	17882	26860	26860					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	432.88525390625	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.581	1	4.581	4.081	5.081	0								0	0	0	0.97116	1	1373	1373		0	0	1				27976	427	17789	17882	26861	26861					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	432.88482666015625	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4482	1	5.4482	4.9482	5.9482	0								0	0	0	0.97116	1	1643	1643		0	0	1				27977	427	17789	17882	26862	26862					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	432.88507080078125	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4575	1	5.4575	4.9575	5.9575	0								0	0	0	0.97116	1	1646	1646		0	0	1				27978	427	17789	17882	26863	26863					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	432.8853454589844	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.502	1	64.388	63.888	64.888	-0.11449								0	0	0	0.97116	1	24955	24955		0	0	1				27979	427	17789	17882	26864	26864					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.8853454589844	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.016	1	3.0612	2.5612	3.5612	0.045237								0	0	0	0.97116	1	914	914		0	0	1				27980	427	17789	17882	26865	26865					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.8848571777344	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9029	1	4.9254	4.4254	5.4254	0.022513								0	0	0	0.97116	1	1477	1477		0	0	1				27981	427	17789	17882	26866	26866					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.885009765625	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0425	1	7.0564	6.5564	7.5564	0.013901								0	0	0	0.97116	1	2127	2127		0	0	1				27982	427	17789	17882	26867	26867					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.8852844238281	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1014	1	7.1153	6.6153	7.6153	0.013901								0	0	0	0.97116	1	2142	2142		0	0	1				27983	427	17789	17882	26868	26868					-0.0025323417623894784
RMMMMIQRSL	10	Unmodified	_RMMMMIQRSL_					0	0	0		CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	CHD4|p.K73Rfs*129|1|0.13|ENSG00000111642|chr12:6602380-6602380|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.8851013183594	3	432.885096	1295.63346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8586	1	9.8911	9.3911	10.391	0.032559								0	0	0	0.97116	1	2981	2981		0	0	1				27984	427	17789	17882	26869	26869					-0.0025323417623894784
RMQVPLYLFNF	11	Unmodified	_RMQVPLYLFNF_					0	0	0		ENST00000553922.5_1_14:74417278-74422293:+|nuORF	ENST00000553922.5_1_14:74417278-74422293:+|nuORF	ENST00000553922.5_1_14:74417278-74422293:+|nuORF	MSMS	HCT116MG_D190212_S4	4	714.3788452148438	2	714.37884	1426.74313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.726	1	20.518	20.018	21.018	-0.20813								0	0	0	0.94538	1	7113	7113		8.7454	3.0136	1				27985	8774	17790	17883	26870	26870					0.04682554030569008
RMQYGHGC	8	Unmodified	_RMQYGHGC_					0	0	0			REV__nc|ENSG00000173157|P59510-2|ADAMTS20	REV__nc|ENSG00000173157|P59510-2|ADAMTS20	MSMS	HCT116MG_D190212_S4	4	476.1985778808594	2	476.199822	950.38509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1815	1	2.9169	2.4169	3.4169	-0.26456								0	0	0	0.8837	1	976	976		0.69038	0	1		+		27986	9858	17791	17884	26871	26871					-0.09208698377244673
RMREELSAA	9	Unmodified	_RMREELSAA_					0	0	0		nc|ENSG00000162062|Q7L2K0-3|TEDC2;ENST00000565716.1_1_16:2511058-2514276:+|nuORF;nc|ENSG00000162062|Q7L2K0-2|TEDC2;ENSG00000162062|ENST00000361837|TEDC2	nc|ENSG00000162062|Q7L2K0-3|TEDC2	nc|ENSG00000162062|Q7L2K0-3|TEDC2	MULTI-MSMS	HCT116MG_D190212_S2	2	354.8500671386719	3	354.850202	1061.52878	-0.13554	-4.8095E-05	-0.1671	-5.9296E-05	-0.30264	-0.00010739	354.8501262542801	17.458	0.26132	17.108	16.978	17.239	-0.34933					9	4	3	0	0	0	0.5825	1	5972	5972		12.175	2.6308	1	9027200			27987	4506	17792	17885	26872	26872					0.0004742693467960635
RMREELSAA	9	Unmodified	_RMREELSAA_					0	0	0		nc|ENSG00000162062|Q7L2K0-3|TEDC2;ENST00000565716.1_1_16:2511058-2514276:+|nuORF;nc|ENSG00000162062|Q7L2K0-2|TEDC2;ENSG00000162062|ENST00000361837|TEDC2	nc|ENSG00000162062|Q7L2K0-3|TEDC2	nc|ENSG00000162062|Q7L2K0-3|TEDC2	MULTI-MSMS	HCT116MG_D190212_S3	3	355.06976318359375	3	354.850202	1061.52878	-0.0016152	-5.7314E-07	-0.22547	-8.0007E-05	-0.22708	-8.058E-05	354.8500604790271	25.215	0.20861	25.109	24.995	25.204	-0.10618					5	3	2	0	0	0	0.73637	1	9003	9003		2.7352	0	1	7746300			27988	4506	17792	17885	26873	26873					0.0004742693467960635
RMRKRIMWRRY	11	Unmodified	_RMRKRIMWRRY_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	826.4249877929688	2	826.466655	1650.91876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.089	1	45.987	45.487	46.487	-0.1014								0	0	0	0.96141	1	17546	17546		0.35063	0.35063	1		+		27989	9993	17793	17886	26874	26874					0.11933490063688623
RMRRPKPKII	10	Unmodified	_RMRRPKPKII_					0	0	0		nc|ENSG00000159200|P53805-4|RCAN1;nc|ENSG00000159200|P53805-3|RCAN1;nc|ENSG00000159200|P53805-2|RCAN1;ENSG00000159200|ENST00000313806|RCAN1	nc|ENSG00000159200|P53805-4|RCAN1	nc|ENSG00000159200|P53805-4|RCAN1	MSMS	HCT116MG_D190212_S4	4	432.2804870605469	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.359	1	52.015	51.515	52.515	-0.34491								0	0	0	0.97045	1	19516	19516		0.15932	0.064481	1				27990	4402	17794	17887	26875	26875					0.1828078135247324
RMRYEYEFYHY	11	Unmodified	_RMRYEYEFYHY_					0	0	0		ENST00000466695.1_1_6:149387353-149395249:+|nuORF;UST|p.L373*|1|0.35|ENSG00000111962|chr6:149074006-149074006|C/-|frameshift_variant;ENSG00000111962|ENST00000367463|UST	ENST00000466695.1_1_6:149387353-149395249:+|nuORF	ENST00000466695.1_1_6:149387353-149395249:+|nuORF	MSMS	HCT116MG_D190212_S1	1	828.86376953125	2	828.866825	1655.7191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.551	1	40.551	40.051	41.051	0								0	0	0	0.96141	1	15245	15245		0.35063	0.35063	1				27991	2325	17795	17888	26876	26876					-0.08253331193736813
RMVKFLIKK	9	Unmodified	_RMVKFLIKK_					0	0	0		nc|ENSG00000188877|Q6S8J7-2|POTEA;nc|ENSG00000188877|Q6S8J7|POTEA	nc|ENSG00000188877|Q6S8J7-2|POTEA	nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S2	2	388.25439453125	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.216	1	36.088	35.588	36.588	-0.12799								0	0	0	0.76954	1	13536	13536		2.4985	1.5362	1				27992	9589	17796	17889	26877	26877					0.16760384452322796
RMWEDPMGA	9	Unmodified	_RMWEDPMGA_					0	0	0		ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L	ENSG00000011243|ENST00000397410|AKAP8L	ENSG00000011243|ENST00000397410|AKAP8L	MULTI-SECPEP	HCT116MG_D190212_S1	1	547.2655029296875	2	546.733694	1091.45284	0.39146	0.00021403	-0.11946	-6.5315E-05	0.272	0.00014871	546.7336666897331	42.838	0.36456	42.838	42.639	43.003	0					9	6	2	0	0	0	0.21635	1	16194	16194		23.79	12.149	1	8657300			27993	888	17797	17890	26878	26878					-0.08923293237080543
RMWEDPMGA	9	Unmodified	_RMWEDPMGA_					0	0	0		ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L	ENSG00000011243|ENST00000397410|AKAP8L	ENSG00000011243|ENST00000397410|AKAP8L	MULTI-MSMS	HCT116MG_D190212_S2	2	546.7340087890625	2	546.733694	1091.45284	0.64215	0.00035109	0.56781	0.00031044	1.21	0.00066153	546.7339177073279	42.837	0.41336	42.767	42.481	42.895	-0.069984					14	7	2	0	0	0	0.012496	1	16201	16201		107.19	79.558	1	36278000			27994	888	17797	17890	26879	26879					-0.08923293237080543
RMWGRLVGL	9	Unmodified	_RMWGRLVGL_					0	0	0		nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.767333984375	2	544.313303	1086.61205	0.77778	0.00042336	-0.068611	-3.7346E-05	0.70917	0.00038601	544.3131839812692	47.605	0.25893	47.472	47.325	47.584	-0.13281					6	4	2	0	0	0	0.062754	1	18168	18168		58.679	23.747	1	24229000			27995	922	17798	17891	26880	26880					0.07221208173200466
RMWKKRKKRTR	11	Unmodified	_RMWKKRKKRTR_					0	0	0		RASAL2|p.E190Gfs*70|1|0.1|ENSG00000075391|chr1:178442759-178442760|-/GTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATC|frameshift_variant	RASAL2|p.E190Gfs*70|1|0.1|ENSG00000075391|chr1:178442759-178442760|-/GTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATC|frameshift_variant	RASAL2|p.E190Gfs*70|1|0.1|ENSG00000075391|chr1:178442759-178442760|-/GTCTTGCTGGTTGTACGAGCAAAGAGGGTATCATC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	787.4876098632812	2	787.488445	1572.96234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.331	1	23.331	22.831	23.831	0								0	0	0	0.96208	1	8304	8304		0	0	1				27996	9802	17799	17892	26881	26881					0.19877422832428238
RMYPFQIHSI	10	Unmodified	_RMYPFQIHSI_					0	0	0		ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	646.657958984375	2	646.334433	1290.65431	0.6149	0.00039743	-0.012646	-8.1734E-06	0.60226	0.00038926	646.3344506088029	46.299	0.20673	46.188	46.059	46.265	-0.11121					6	3	2	0	0	0	0.072018	1	17644	17644		79.596	46.811	1	12804000			27997	1773	17800	17893	26882	26882					0.020611387909184486
RNDEDCCNP	9	Unmodified	_RNDEDCCNP_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-4|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-4|DZANK1	MSMS	HCT116MG_D190212_S4	4	533.1915283203125	2	533.189848	1064.36514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.74	1	42.365	41.865	42.865	-0.37493								0	0	0	0.76902	1	15720	15720		4.3292	0	1		+		27998	17088	17801	17894	26883	26883					-0.1644653889854908
RNDLRKVLH	9	Unmodified	_RNDLRKVLH_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	HCT116MG_D190212_S1	1	575.8428344726562	2	575.843813	1149.67307	0.2369	0.00013642	-0.53542	-0.00030832	-0.29852	-0.0001719	575.8433589863788	50.309	0.98069	50.309	50.059	51.04	0					37	18	3	0	0	0	0.71345	1	19362	19362		4.3292	0.38484	1	200500000			27999	2060	17802	17895	26884	26884					0.10422436476960684
RNDVSIILRK	10	Unmodified	_RNDVSIILRK_					0	0	0		ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	MSMS	HCT116MG_D190212_S3	3	607.4344482421875	2	607.372404	1212.73025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.744	1	51.435	50.935	51.935	-0.30927								0	0	0	0.95648	1	19544	19544		3.2813	0	1				28000	6034	17803	17896	26885	26885					0.13239858962697326
RNEWFVFT	8	Unmodified	_RNEWFVFT_					0	0	0			REV__ENST00000464792.1_3_20:18119008-18122939:+|nuORF	REV__ENST00000464792.1_3_20:18119008-18122939:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	368.22918701171875	3	366.85042	1097.52943	-0.11879	-4.3577E-05	-0.50604	-0.00018564	-0.62482	-0.00022922	366.85018616643316	25.114	0.31228	24.739	24.608	24.92	-0.37521					15	5	4	0	0	0	0.8506	1	9025	9025		3.5965	0	1	59162000	+		28001	15812	17804	17897	26886	26886					-0.015434103539519128
RNKRYLVVVWS	11	Unmodified	_RNKRYLVVVWS_					0	0	0			REV__nc|ENSG00000022267|Q13642|FHL1	REV__nc|ENSG00000022267|Q13642|FHL1	MSMS	HCT116MG_D190212_S1	1	710.4174194335938	2	710.414603	1418.81465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.544	1	37.544	37.044	38.044	0								0	0	0	0.95686	1	14030	14030		2.7352	0.23671	1		+		28002	17068	17805	17898	26887	26887					0.12199809779463067
RNLFKKVYL	9	Unmodified	_RNLFKKVYL_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MSMS	HCT116MG_D190212_S4	4	394.2438049316406	3	394.244881	1179.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.153	1	37.77	37.27	38.27	-0.38283								0	0	0	0.76862	1	13972	13972		5.7319	0	1				28003	2929	17806	17899	26888	26888					0.13014563427714165
RNLKFQGASN	10	Unmodified	_RNLKFQGASN_					0	0	0		ENSG00000088205|ENST00000263239|DDX18;DDX18|p.K110Efs*11|1|0.42|ENSG00000088205|chr2:117817678-117817679|-/A|frameshift_variant	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	HCT116MG_D190212_S1	1	567.7506713867188	2	567.804354	1133.59415	0.41941	0.00023814	0.18918	0.00010742	0.60859	0.00034556	567.8042176478405	21.199	0.21212	21.199	21.067	21.279	0					6	3	2	0	0	0	0.26991	1	7429	7429		34.932	13.395	1	2178900			28004	1492	17807	17900	26889	26889					0.03270164452055724
RNLLHDNEL	9	Unmodified	_RNLLHDNEL_					0	0	0		nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1;nc|ENSG00000138376|Q99728-4|BARD1;BARD1|p.K208Rfs*4|3|0.24|ENSG00000138376|chr2:214781251-214781251|T/-|frameshift_variant;BARD1|p.D172Mfs*40|2|0.14|ENSG00000138376|chr2:214781361-214781361|T/-|frameshift_variant;BARD1|p.N306Ifs*11|1|0.11|ENSG00000138376|chr2:214780957-214780957|T/-|frameshift_variant	nc|ENSG00000138376|Q99728-2|BARD1	nc|ENSG00000138376|Q99728-2|BARD1	MSMS	HCT116MG_D190212_S1	1	562.2963256835938	2	562.296362	1122.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.058	1	33.058	32.558	33.558	0								0	0	0	0.67254	1	12221	12221		20.415	4.2654	1				28005	3552	17808	17901	26890	26890					0.02178458215144019
RNNKPAGL	8	Unmodified	_RNNKPAGL_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14	REV__nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	HCT116MG_D190212_S4	4	436.2538146972656	2	435.251226	868.487899	0.20906	9.0993E-05	-0.27852	-0.00012123	-0.06946	-3.0233E-05	435.25099803760594	43.889	1.1017	43.515	43.018	44.12	-0.37408					42	22	3	0	0	0	0.86564	1	16150	16150		2.5775	0	1	7199000	+		28006	17248	17809	17902	26891	26891					0.048394536773685104
RNNLRKGRTV	10	Unmodified	_RNNLRKGRTV_					0	0	0			REV__PHF21A|p.P652Lfs*104|4|0.42|ENSG00000135365|chr11:45934056-45934056|G/-|frameshift_variant	REV__PHF21A|p.P652Lfs*104|4|0.42|ENSG00000135365|chr11:45934056-45934056|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	405.2457580566406	3	405.246055	1212.71634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.377	1	49.061	48.561	49.561	-0.31596								0	0	0	0.96453	1	18592	18592		0.62683	0	1		+		28007	17414	17810	17903	26892	26892					0.11848626254254668
RNNTEYRGGY	10	Unmodified	_RNNTEYRGGY_					0	0	0		ENSG00000002746|ENST00000395891|HECW1;nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2	ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MSMS	HCT116MG_D190212_S1	1	615.5367431640625	2	615.286525	1228.5585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.268	1	22.268	21.768	22.768	0								0	0	0	0.91279	1	7875	7875		13.042	3.6593	1				28008	790;3556	17811	17904	26893	26893					-0.04663917795596717
RNPELGGP	8	Unmodified	_RNPELGGP_					0	0	0			REV__ENST00000508237.5_1_17:47399842-47439344:-|nuORF	REV__ENST00000508237.5_1_17:47399842-47439344:-|nuORF	MSMS	HCT116MG_D190212_S4	4	420.2225646972656	2	420.222134	838.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.659	1	61.404	60.904	61.904	-0.25457								0	0	0	0.8837	1	23267	23267		2.5775	0	1		+		28009	16159	17812	17905	26894	26894					0.00403772032109373
RNRILEIVY	9	Unmodified	_RNRILEIVY_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	588.3489990234375	2	588.348397	1174.68224	0.69792	0.00041062	0.14502	8.5321E-05	0.84294	0.00049594	588.3482333155632	45.062	0.31419	44.97	44.839	45.153	-0.092472					11	5	3	0	0	0	0.16306	1	17141	17141		45.7	9.5726	1	30923000			28010	5512	17813	17906	26895	26895					0.10188785042646487
RNRKALPA	8	Unmodified	_RNRKALPA_					0	0	0			REV__ENST00000227525.7_1_11:60689754-60689967:+|nuORF	REV__ENST00000227525.7_1_11:60689754-60689967:+|nuORF	MSMS	HCT116MG_D190212_S1	1	462.95562744140625	2	463.288143	924.561733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.308	1	55.308	54.808	55.808	0								0	0	0	0.8837	1	21235	21235		0.79363	0	1		+		28011	14538	17814	17907	26896	26896					0.0964342183970075
RNRRPPWSNDN	11	Unmodified	_RNRRPPWSNDN_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.R554Qfs*30|1|0.27|ENSG00000124201|chr20:49270153-49270154|-/C|frameshift_variant;ZNFX1|p.R900Efs*2|2|0.38|ENSG00000124201|chr20:49255914-49255914|T/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	HCT116MG_D190212_S1	1	706.349853515625	2	706.350523	1410.68649	0.69656	0.00049201	-1.5899	-0.001123	-0.89334	-0.00063101	706.3494183599307	25.535	0.31314	25.535	25.353	25.666	0					8	5	2	0	0	0	0.73156	1	9204	9204		10.151	3.0488	1	7043500			28012	2833	17815	17908	26897	26897					-0.0024235748171577143
RNSLLLIKQQG	11	Unmodified	_RNSLLLIKQQG_					0	0	0		nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2	nc|ENSG00000110888|Q6IMN6-10|CAPRIN2	nc|ENSG00000110888|Q6IMN6-10|CAPRIN2	MSMS	HCT116MG_D190212_S4	4	635.0396118164062	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.032	1	51.686	51.186	52.186	-0.34538								0	0	0	0.95273	1	19384	19384		4.897	0.95262	1				28013	9422	17816	17909	26898	26898					0.13284128134182538
RNTPRRTLL	9	Unmodified	_RNTPRRTLL_					0	0	0		ENST00000506146.5_1_4:38802554-38858398:-|nuORF	ENST00000506146.5_1_4:38802554-38858398:-|nuORF	ENST00000506146.5_1_4:38802554-38858398:-|nuORF	MSMS	HCT116MG_D190212_S4	4	376.23291015625	3	376.231634	1125.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.642	1	43.267	42.767	43.767	-0.37433								0	0	0	0.76967	1	16049	16049		1.0715	0	1				28014	8460	17817	17910	26899	26899					0.11526436476992785
RNVARCWTY	9	Carbamidomethyl (C)	_RNVARC(Carbamidomethyl (C))WTY_	RNVARC(1)WTY		RNVARC(110)WTY		0	1	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000491581.5_1_5:141004689-141007494:-|nuORF;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	HCT116MG_D190212_S2	2	613.2985229492188	2	613.298381	1224.58221	0.65066	0.00039905	-0.38567	-0.00023653	0.26499	0.00016252	613.2982552849545	31.707	0.31091	31.458	31.302	31.613	-0.24883					12	5	3	0	0	0	0.012596	1	11719	11719		106.94	79.311	1	24924000			28015	2517	17818	17911	26900	26900	11				-0.021097755628034065
RNVMEQFNP	9	Unmodified	_RNVMEQFNP_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;BAIAP2L1|p.N36Ifs*6|1|0.24|ENSG00000006453|chr7:98362382-98362382|C/-|frameshift_variant;BAIAP2L1|p.A287Lfs*11|2|0.27|ENSG00000006453|chr7:98310542-98310542|G/-|frameshift_variant;ENST00000462558.5_1_7:97937677-98030347:-|nuORF;BAIAP2L1|p.P436Hfs*60|4|0.39|ENSG00000006453|chr7:98304311-98304311|G/-|frameshift_variant;BAIAP2L1|p.F462Lfs*34|1|0.21|ENSG00000006453|chr7:98304232-98304232|A/-|frameshift_variant	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	HCT116MG_D190212_S2	2	378.85009765625	3	378.850202	1133.52878	-0.19379	-7.3418E-05	-0.032998	-1.2501E-05	-0.22679	-8.592E-05	378.85021382557096	17.301	1.2015	16.951	16.873	18.075	-0.34933					31	22	2	0	0	0	0.59184	1	5906	5906		7.609	0.50723	1	10507000			28016	827	17819	17912	26901	26901					-0.032645730653030114
RNVPDALAA	9	Unmodified	_RNVPDALAA_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MSMS	HCT116MG_D190212_S2	2	463.756591796875	2	463.756341	925.498129	0.3848	0.00017845	0.72001	0.00033391	1.1048	0.00051236	463.7567901827498	26.242	0.51833	25.88	25.557	26.076	-0.36164					20	9	3	0	0	0	0.24895	1	9441	9441		36.127	2.0246	1	18751000			28017	1417	17820	17913	26902	26902					0.032400166119259666
RNVPDALAA	9	Unmodified	_RNVPDALAA_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	463.756341	925.498129	0.18735	8.6886E-05	0.051363	2.382E-05	0.23872	0.00011071	463.7563931922585	25.684	0.47049	25.684	25.509	25.98	0	-0.04529	-0.00039373	NaN	36.127	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2831400			28018	1417	17820	17913							0.032400166119259666
RNVPDALAA	9	Unmodified	_RNVPDALAA_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	463.756341	925.498129	0.46527	0.00021577	0.30362	0.00014081	0.76889	0.00035658	463.7566896179351	25.752	0.57345	25.624	25.442	26.016	-0.12795	-0.10537	-0.00015975	NaN	36.127	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4348600			28019	1417	17820	17913							0.032400166119259666
RNWRRWYRSFK	11	Unmodified	_RNWRRWYRSFK_					0	0	0			REV__nc|ENSG00000151067|Q13936-2|CACNA1C	REV__nc|ENSG00000151067|Q13936-2|CACNA1C	MSMS	HCT116MG_D190212_S4	4	827.9478149414062	2	827.944924	1653.8753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.982	1	45.61	45.11	46.11	-0.37206								0	0	0	0.96149	1	16982	16982		0.30703	0.30703	1		+		28020	10077	17821	17914	26903	26903					0.07451339882368302
RNYLHYSL	8	Unmodified	_RNYLHYSL_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MSMS	HCT116MG_D190212_S1	1	533.2775268554688	2	533.277441	1064.54033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.921	1	37.921	37.421	38.421	0								0	0	0	0.24844	1	14182	14182		61.357	17.585	1				28021	2155	17822	17915	26904	26904					0.01063992020317528
RNYLHYSL	8	Unmodified	_RNYLHYSL_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	HCT116MG_D190212_S2	2	533.2767944335938	2	533.277441	1064.54033	0.2246	0.00011978	0.3811	0.00020323	0.60571	0.00032301	533.2776223535899	37.906	0.3613	37.813	37.702	38.063	-0.09301					10	6	2	0	0	0	0.060005	1	14234	14234		112.59	51.236	1	39996000			28022	2155	17822	17915	26905	26905					0.01063992020317528
RNYLHYSL	8	Unmodified	_RNYLHYSL_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	533.277441	1064.54033	0.11385	6.0711E-05	-0.53381	-0.00028467	-0.41997	-0.00022396	533.2772423695355	37.89	0.20807	37.89	37.707	37.916	0	0.038425	-6.9269E-05	NaN	112.59	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10271000			28023	2155	17822	17915							0.01063992020317528
RPDAGAMY	8	Unmodified	_RPDAGAMY_					0	0	0			REV__KCNK4|p.V219M|1|0.26|ENSG00000182450|chr11:64297647-64297647|G/A|missense_variant	REV__KCNK4|p.V219M|1|0.26|ENSG00000182450|chr11:64297647-64297647|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	440.7025146484375	2	440.70272	879.390887	0.098676	4.3487E-05	0.67738	0.00029852	0.77606	0.00034201	440.7029484460158	51.047	0.31086	50.868	50.655	50.966	-0.17869					9	5	2	0	0	0	0.74206	1	19591	19591		18.135	3.5533	1	17248000	+		28024	16918	17823	17916	26906	26906					-0.053632765939369165
RPDMVWVSVA	10	Unmodified	_RPDMVWVSVA_					0	0	0			REV__ENST00000594950.5_1_19:58864719-58865114:+|nuORF	REV__ENST00000594950.5_1_19:58864719-58865114:+|nuORF	MSMS	HCT116MG_D190212_S4	4	387.2012634277344	3	387.202465	1158.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.309	1	52.974	52.474	53.474	-0.33473								0	0	0	0.95648	1	19899	19899		1.5923	0.63001	1		+		28025	16710	17824	17917	26907	26907					0.012614744912298193
RPDRKFWL	8	Unmodified	_RPDRKFWL_					0	0	0			REV__nc|ENSG00000156222|O00337-2|SLC28A1	REV__nc|ENSG00000156222|O00337-2|SLC28A1	MSMS	HCT116MG_D190212_S4	4	373.0803527832031	3	373.213692	1116.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.987	1	45.615	45.115	46.115	-0.37206								0	0	0	0.8837	1	16984	16984		3.5965	0.52423	1		+		28026	17173	17825	17918	26908	26908					0.06560264045265285
RPESHILLILL	11	Unmodified	_RPESHILLILL_					0	0	0			REV__OR2T3|p.V289Cfs*2|1|0.13|ENSG00000196539|chr1:248474215-248474215|G/-|frameshift_variant	REV__OR2T3|p.V289Cfs*2|1|0.13|ENSG00000196539|chr1:248474215-248474215|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	652.4112548828125	2	652.408455	1302.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.62	1	51.436	50.936	51.936	-0.18369								0	0	0	0.95778	1	19810	19810		4.897	3.5675	1		+		28027	13757	17826	17919	26909	26909					0.16306773316432555
RPEVIKPVF	9	Unmodified	_RPEVIKPVF_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MSMS	HCT116MG_D190212_S4	4	362.2223815917969	3	362.221965	1083.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.561	1	45.188	44.688	45.688	-0.37266								0	0	0	0.76991	1	16811	16811		1.1933	0	1				28028	2251	17827	17920	26910	26910					0.10558899127977384
RPEVIKPVF	9	Unmodified	_RPEVIKPVF_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MSMS	HCT116MG_D190212_S4	4	362.2225341796875	3	362.221965	1083.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.465	1	51.115	50.615	51.615	-0.35028								0	0	0	0.76991	1	19155	19155		1.1933	0	1				28029	2251	17827	17920	26911	26911					0.10558899127977384
RPGPPPPP	8	Unmodified	_RPGPPPPP_					0	0	0			REV__ENSG00000269855|ENST00000601382|RNF225	REV__ENSG00000269855|ENST00000601382|RNF225	MSMS	HCT116MG_D190212_S3	3	407.73077392578125	2	407.732138	813.449723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.759	1	34.462	33.962	34.962	-0.29707								0	0	0	0.8837	1	12806	12806		5.7604	0	1		+		28030	14437	17828	17921	26912	26912					0.0355356776269673
RPGPPPPP	8	Unmodified	_RPGPPPPP_					0	0	0			REV__ENSG00000269855|ENST00000601382|RNF225	REV__ENSG00000269855|ENST00000601382|RNF225	MSMS	HCT116MG_D190212_S4	4	407.7308654785156	2	407.732138	813.449723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.936	1	34.55	34.05	35.05	-0.38606								0	0	0	0.8837	1	12776	12776		2.5775	0	1		+		28031	14437	17828	17921	26913	26913					0.0355356776269673
RPHGSKLT	8	Unmodified	_RPHGSKLT_					0	0	0		ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	HCT116MG_D190212_S1	1	448.2588195800781	2	448.259051	894.503549	0.17105	7.6674E-05	-0.34364	-0.00015404	-0.17259	-7.7367E-05	448.2588380724304	46.569	0.4657	46.569	46.389	46.855	0					10	8	2	0	0	0	0.85329	1	17679	17679		4.756	0	1	20892000			28032	5433	17829	17922	26914	26914					0.052077401944075064
RPHRRRRSS	9	Unmodified	_RPHRRRRSS_					0	0	0			REV__SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant	REV__SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	604.3541870117188	2	604.353203	1206.69185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.774	1	47.641	47.141	48.141	-0.13281								0	0	0	0.76834	1	18232	18232		6.7232	0	1		+		28033	17542	17830	17923	26915	26915					0.09677410891413274
RPHRRRRSS	9	Unmodified	_RPHRRRRSS_					0	0	0			REV__SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant	REV__SOX9|p.V291Afs*92|1|0.55|ENSG00000125398|chr17:72123729-72123729|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	604.3540649414062	2	604.353203	1206.69185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.034	1	41.732	41.232	42.232	-0.30257								0	0	0	0.76923	1	15646	15646		3.5965	0	1		+		28034	17542	17830	17923	26916	26916					0.09677410891413274
RPKKLLLI	8	Unmodified	_RPKKLLLI_					0	0	0			REV__ENSG00000174010|ENST00000328046|KLHL15	REV__ENSG00000174010|ENST00000328046|KLHL15	MSMS	HCT116MG_D190212_S1	1	490.8536071777344	2	490.852587	979.690622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.96	1	12.96	12.46	13.46	0								0	0	0	0.8837	1	4186	4186		0	0	1		+		28035	13465	17831	17924	26917	26917					0.19996383749958113
RPKVMRYILGP	11	Unmodified	_RPKVMRYILGP_					0	0	0			REV__TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant	REV__TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	444.6976623535156	3	443.932309	1328.7751	0.17523	7.7791E-05	0.016552	7.3479E-06	0.19178	8.5139E-05	444.2664147776723	17.02	0.15652	17.02	16.942	17.098	0					6	2	3	0	0	0	0.74191	1	5735	5735		0.50596	0	1	10366000	+		28036	13720	17832	17925	26918	26918					0.12385966504371027
RPLDPILYGI	10	Unmodified	_RPLDPILYGI_					0	0	0			REV__ENST00000563767.1_1_16:89857732-89858395:-|nuORF	REV__ENST00000563767.1_1_16:89857732-89858395:-|nuORF	MSMS	HCT116MG_D190212_S1	1	578.840576171875	2	578.839874	1155.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.728	1	56.728	56.228	57.228	0								0	0	0	0.86147	1	21815	21815		29.841	0	1		+		28037	16516	17833	17926	26919	26919					0.09358864436876502
RPLKLPRRLLR	11	Unmodified	_RPLKLPRRLLR_					0	0	0		ENST00000451837.5_1_22:24056493-24059477:-|nuORF;ENST00000452737.5_1_22:24056401-24059477:-|nuORF;nc|ENSG00000272578|Q6P575|GUSBP11	ENST00000451837.5_1_22:24056493-24059477:-|nuORF	ENST00000451837.5_1_22:24056493-24059477:-|nuORF	MSMS	HCT116MG_D190212_S4	4	473.32440185546875	3	473.324528	1416.95176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.193	1	12.021	11.521	12.521	-0.17195								0	0	0	0.96208	1	3774	3774		0	0	1				28038	7988	17834	17927	26920	26920					0.25995763449691367
RPLLIKLKT	9	Unmodified	_RPLLIKLKT_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MSMS	HCT116MG_D190212_S4	4	361.2529602050781	3	361.253376	1080.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.635	1	61.381	60.881	61.881	-0.25457								0	0	0	0.77018	1	23257	23257		0.26902	0	1				28039	1717	17835	17928	26921	26921					0.20116037950128884
RPLLIKLKT	9	Unmodified	_RPLLIKLKT_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MSMS	HCT116MG_D190212_S4	4	361.2528991699219	3	361.253376	1080.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.243	1	61.994	61.494	62.494	-0.24919								0	0	0	0.77018	1	23500	23500		0.26902	0	1				28040	1717	17835	17928	26922	26922					0.20116037950128884
RPLLIKLKT	9	Unmodified	_RPLLIKLKT_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MSMS	HCT116MG_D190212_S4	4	361.22174072265625	3	361.253376	1080.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.677	1	62.428	61.928	62.928	-0.24919								0	0	0	0.77018	1	23667	23667		0.26902	0	1				28041	1717	17835	17928	26923	26923					0.20116037950128884
RPLLIVEKQKL	11	Unmodified	_RPLLIVEKQKL_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.N1030Sfs*23|1|0.07|ENSG00000047315|chr4:57025384-57025385|-/CT|frameshift_variant	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MSMS	HCT116MG_D190212_S3	3	446.2958679199219	3	446.294012	1335.86021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.413	1	37.112	36.612	37.612	-0.30137								0	0	0	0.96111	1	13857	13857		0.50596	0.051438	1				28042	1025	17836	17929	26924	26924					0.20571035241823665
RPLLLVKEFIR	11	Unmodified	_RPLLLVKEFIR_					0	0	0		nc|ENSG00000152767|Q9Y4F1-2|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	MSMS	HCT116MG_D190212_S2	2	692.4440307617188	2	692.445372	1382.87619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.358	1	58.188	57.688	58.688	-0.1703								0	0	0	0.95731	1	22552	22552		2.4985	2.1479	1				28043	9502	17837	17930	26925	26925					0.20006741478732692
RPLLPFLC	8	Unmodified	_RPLLPFLC_					0	0	0		ENST00000269321.11_1_17:79826257-79826755:-|nuORF	ENST00000269321.11_1_17:79826257-79826755:-|nuORF	ENST00000269321.11_1_17:79826257-79826755:-|nuORF	MSMS	HCT116MG_D190212_S4	4	479.7798767089844	2	479.780773	957.546994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.853	1	47.484	46.984	47.984	-0.36907								0	0	0	0.8837	1	17703	17703		5.7604	0	1				28044	6917	17838	17931	26926	26926					0.06652213647339522
RPLPGSWL	8	Unmodified	_RPLPGSWL_					0	0	0			REV__ENSG00000104356|ENST00000401707|POP1	REV__ENSG00000104356|ENST00000401707|POP1	MSMS	HCT116MG_D190212_S4	4	463.2670593261719	2	463.266345	924.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.197	1	58.919	58.419	59.419	-0.27731								0	0	0	0.8837	1	22271	22271		2.5775	0	1		+		28045	11210	17839	17932	26927	26927					0.05285812342560803
RPNWRRRWWRF	11	Unmodified	_RPNWRRRWWRF_					0	0	0			REV__ENST00000463462.5_1_7:148982563-148988696:+|nuORF	REV__ENST00000463462.5_1_7:148982563-148988696:+|nuORF	MSMS	HCT116MG_D190212_S1	1	572.64501953125	3	572.646664	1714.91816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.648	1	52.648	52.148	53.148	0								0	0	0	0.96192	1	20143	20143		0.08335	0.010087	1		+		28046	15553	17840	17933	26928	26928					0.08930154730478534
RPPGFSPFR	9	Unmodified	_RPPGFSPFR_					0	0	0		CON__P01045-1;CON__Q2KJ62;CON__P01044-1;nc|ENSG00000113889|P01042-3|KNG1;nc|ENSG00000113889|P01042-2|KNG1;ENSG00000113889|ENST00000644859|KNG1	CON__P01045-1	CON__P01045-1	MULTI-MSMS	HCT116MG_D190212_S4	4	530.7879638671875	2	530.787976	1059.5614	0.39476	0.00020953	1.1063	0.00058719	1.501	0.00079672	530.7881432584051	37.064	0.23083	36.679	36.591	36.822	-0.38486					6	4	2	0	0	0	0.19011	1	13606	13606		42.312	8.21	1	1923900		+	28047	544	17841	17934	26929	26929					0.03400002119838064
RPPLKRFLR	9	Unmodified	_RPPLKRFLR_					0	0	0			REV__ENSG00000132017|ENST00000254337|DCAF15	REV__ENSG00000132017|ENST00000254337|DCAF15	MSMS	HCT116MG_D190212_S2	2	591.8818359375	2	591.882742	1181.75093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.71	1	59.55	59.05	60.05	-0.16012								0	0	0	0.7701	1	23094	23094		0.52476	0	1		+		28048	11979	17842	17935	26930	26930					0.16732494133020737
RPPRNIIVS	9	Unmodified	_RPPRNIIVS_					0	0	0			REV__ENST00000300853.7_1_19:45912690-45912933:-|nuORF	REV__ENST00000300853.7_1_19:45912690-45912933:-|nuORF	MSMS	HCT116MG_D190212_S4	4	351.2165832519531	3	351.217214	1050.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.517	1	59.239	58.739	59.739	-0.27731								0	0	0	0.76998	1	22398	22398		0.96228	0	1		+		28049	14782	17843	17936	26931	26931					0.10652246699692114
RPQYLEQNP	9	Unmodified	_RPQYLEQNP_					0	0	0		ENST00000587257.1_1_19:36426667-36427862:+|nuORF	ENST00000587257.1_1_19:36426667-36427862:+|nuORF	ENST00000587257.1_1_19:36426667-36427862:+|nuORF	MSMS	HCT116MG_D190212_S1	1	382.19732666015625	3	382.196367	1143.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.001	1	33.001	32.501	33.501	0								0	0	0	0.768	1	12198	12198		8.1555	1.9637	1				28050	9004	17844	17937	26932	26932					0.001230558408451543
RPRGPRRRPRP	11	Unmodified	_RPRGPRRRPRP_					0	0	0			REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335	REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335	MULTI-MSMS	HCT116MG_D190212_S4	4	467.6239013671875	3	467.62386	1399.84975	0.16333	7.6376E-05	0.29007	0.00013564	0.4534	0.00021202	467.6238543042362	56.598	0.26081	56.292	56.2	56.461	-0.30626					10	4	3	0	0	0	0.74191	1	21248	21248		0.08335	0	1	2052300	+		28051	14104	17845	17938	26933	26933					0.16581910150625845
RPRKIKEI	8	Unmodified	_RPRKIKEI_					0	0	0			REV__ENSG00000131467|ENST00000590720|PSME3	REV__ENSG00000131467|ENST00000590720|PSME3	MSMS	HCT116MG_D190212_S1	1	520.3401489257812	2	520.340375	1038.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.521	1	58.521	58.021	59.021	0								0	0	0	0.8837	1	22546	22546		0.6015	0	1		+		28052	11963	17846	17939	26934	26934					0.14841123596420402
RPRLPFLPLL	10	Unmodified	_RPRLPFLPLL_					0	0	0		ENST00000584471.5_1_17:65375098-65375356:+|nuORF	ENST00000584471.5_1_17:65375098-65375356:+|nuORF	ENST00000584471.5_1_17:65375098-65375356:+|nuORF	MSMS	HCT116MG_D190212_S1	1	407.9327392578125	3	407.932526	1220.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.7237	1	7.7237	7.2237	8.2237	0								0	0	0	0.97045	1	2334	2334		0.15932	0	1				28053	8976	17847	17940	26935	26935					0.17419129215750218
RPRLSTGMK	9	Unmodified	_RPRLSTGMK_					0	0	0			REV__HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant	REV__HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	523.302734375	2	523.300393	1044.58623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.853	1	49.49	48.99	49.99	-0.36213								0	0	0	0.76739	1	18504	18504		10.074	2.7847	1		+		28054	16893	17848	17941	26936	26936					0.06572313930905693
RPRNKRRKNRK	11	Unmodified	_RPRNKRRKNRK_					0	0	0			REV__CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	REV__CLUH|p.P878Rfs*12|1|0.23|ENSG00000132361|chr17:2694959-2694959|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	503.6539001464844	3	503.653819	1507.93963	0.46389	0.00023364	-0.014945	-7.527E-06	0.44894	0.00022611	503.65371367000273	55.121	0.20322	55.121	55.044	55.247	0					5	3	2	0	0	0	0.74191	1	21188	21188		0.45452	0.046251	1	68154000	+		28055	10208	17849	17942	26937	26937					0.20597539759205574
RPRNYLHRRQQ	11	Unmodified	_RPRNYLHRRQQ_					0	0	0		ENST00000511601.5_1_4:153864127-153864241:+|nuORF	ENST00000511601.5_1_4:153864127-153864241:+|nuORF	ENST00000511601.5_1_4:153864127-153864241:+|nuORF	MSMS	HCT116MG_D190212_S2	2	762.4983520507812	2	762.424356	1522.83416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.519	1	42.449	41.949	42.949	-0.069984								0	0	0	0.9598	1	16096	16096		1.1933	0	1				28056	8502	17850	17943	26938	26938					0.09365578842903233
RPRPCRPPP	9	Unmodified	_RPRPCRPPP_					0	0	0			REV__ENST00000283646.4_1_2:88991379-88991499:+|nuORF	REV__ENST00000283646.4_1_2:88991379-88991499:+|nuORF	MSMS	HCT116MG_D190212_S4	4	538.3221435546875	2	538.300727	1074.5869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.994	1	16.828	16.328	17.328	-0.16664								0	0	0	0.76669	1	5605	5605		12.532	0	1		+		28057	14727	17851	17944	26939	26939					0.05259153370616332
RPRPPLALR	9	Unmodified	_RPRPPLALR_					0	0	0			REV__EXTL1|p.P388Qfs*35|1|0.43|ENSG00000158008|chr1:26031188-26031188|C/-|frameshift_variant	REV__EXTL1|p.P388Qfs*35|1|0.43|ENSG00000158008|chr1:26031188-26031188|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	359.1434020996094	3	359.233087	1074.67743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.244	1	57.975	57.475	58.475	-0.26932								0	0	0	0.76995	1	22152	22152		1.0715	0	1		+		28058	12770	17852	17945	26940	26940					0.14307945690529777
RPRRRPRRWLK	11	Unmodified	_RPRRRPRRWLK_					0	0	0		ENST00000251102.12_1_16:57965650-57974178:-|nuORF	ENST00000251102.12_1_16:57965650-57974178:-|nuORF	ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MSMS	HCT116MG_D190212_S1	1	789.0000610351562	2	788.997826	1575.9811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.205	1	19.205	18.705	19.705	0								0	0	0	0.96208	1	6647	6647		0	0	1				28059	6799	17853	17946	26941	26941					0.21614720518527974
RPSRVRRATGP	11	Unmodified	_RPSRVRRATGP_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000197892|Q9NQT8-2|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MSMS	HCT116MG_D190212_S3	3	626.9674682617188	2	626.870894	1251.72723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.079	1	30.818	30.318	31.318	-0.26071								0	0	0	0.95113	1	11341	11341		5.7319	0.43497	1				28060	6183	17854	17947	26942	26942					0.11144028628564229
RPTLLVAML	9	Unmodified	_RPTLLVAML_					0	0	0			REV__ENSG00000166153|ENST00000550587|DEPDC4	REV__ENSG00000166153|ENST00000550587|DEPDC4	MULTI-MSMS	HCT116MG_D190212_S1	1	507.3129577636719	2	507.312438	1012.61032	0.18083	9.1739E-05	0.52188	0.00026476	0.70272	0.0003565	507.31269245048867	50.446	0.30821	50.446	50.266	50.574	0					15	5	4	0	0	0	0.33687	2	19251	19251;19272		26.884	12.302	1	78391000	+		28061	13092	17855	17948	26943;26944	26943					0.10452154364577382
RPVPRIKP	8	Unmodified	_RPVPRIKP_					0	0	0		nc|ENSG00000154080|Q7L1S5-2|CHST9	nc|ENSG00000154080|Q7L1S5-2|CHST9	nc|ENSG00000154080|Q7L1S5-2|CHST9	MULTI-MSMS	HCT116MG_D190212_S2	2	962.6259765625	1	962.625796	961.618519	0.68825	0.00066252	0.19915	0.00019171	0.8874	0.00085424	962.6256928592479	60.899	1.3481	60.75	60.373	61.721	-0.14852					45	25	3	0	0	0	0.87635	1	23529	23529		0.69038	0	1	26780000			28062	9504	17856	17949	26945	26945					0.13617469396228898
RPWEMRFIYSQ	11	Unmodified	_RPWEMRFIYSQ_					0	0	0			REV__ENST00000324348.8_2_17:7818490-7818643:-|nuORF	REV__ENST00000324348.8_2_17:7818490-7818643:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	756.8768920898438	2	756.874453	1511.73435	0.88796	0.00067207	1.2083	0.00091455	2.0963	0.0015866	757.3766916530705	40.269	0.73267	39.891	39.553	40.286	-0.37828					27	19	2	0	0	0	0.74191	1	14735	14735		4.897	1.9018	1	3901500	+		28063	14898	17857	17950	26946	26946					-0.0010441960587286303
RPWPMIWPK	9	Unmodified	_RPWPMIWPK_					0	0	0		ENST00000337532.9_1_10:28436464-28438936:-|nuORF	ENST00000337532.9_1_10:28436464-28438936:-|nuORF	ENST00000337532.9_1_10:28436464-28438936:-|nuORF	MSMS	HCT116MG_D190212_S2	2	605.8314208984375	2	605.831329	1209.6481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.553	1	11.271	10.771	11.771	-0.28186								0	0	0	0.77025	1	3729	3729		0	0	1				28064	7196	17858	17951	26947	26947					0.05166665350043331
RPWPYPPPP	9	Unmodified	_RPWPYPPPP_					0	0	0			REV__PTPN14|p.R572W|1|0.13|ENSG00000152104|chr1:214384141-214384141|G/A|missense_variant	REV__PTPN14|p.R572W|1|0.13|ENSG00000152104|chr1:214384141-214384141|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	553.7256469726562	2	553.792727	1105.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.519	1	15.192	14.692	15.692	-0.32684								0	0	0	0.76781	1	5162	5162		8.5933	1.8701	1		+		28065	17453	17859	17952	26948	26948					0.02233770405382529
RPWRQQSYS	9	Unmodified	_RPWRQQSYS_					0	0	0			REV__PCDHA13|p.R755W|1|0.18|ENSG00000239389|chr5:140884531-140884531|C/T|missense_variant	REV__PCDHA13|p.R755W|1|0.18|ENSG00000239389|chr5:140884531-140884531|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	604.3008422851562	2	604.301978	1206.5894	0.53077	0.00032075	-1.2624	-0.0007629	-0.73168	-0.00044215	604.3012678465743	19.432	0.93694	19.492	18.97	19.907	0.059828					26	17	2	0	0	0	0.53593	1	6670	6670		14.838	3.3436	1	3515500	+		28066	17389	17860	17953	26949	26949					-0.005627196907198595
RQADKVWRL	9	Unmodified	_RQADKVWRL_					0	0	0		nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;NFIC|p.P456Lfs*36|1|0.3|ENSG00000141905|chr19:3453855-3453855|C/-|frameshift_variant;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000147862|O00712-4|NFIB;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000147862|ENST00000380953|NFIB;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX	nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000008441|Q14938-6|NFIX	nc|ENSG00000141905|P08651-4|NFIC	MULTI-MSMS	HCT116MG_D190212_S1	1	391.2278747558594	3	391.228001	1170.66217	-0.068834	-2.693E-05	0.0090152	3.527E-06	-0.059818	-2.3403E-05	391.22795244599234	34.363	0.31258	34.363	34.181	34.493	0					16	5	4	0	0	0	7.5242E-05	1	12749	12749		173.14	117.9	1	54919000			28067	3736;4532;9366	17861	17954	26950	26950					0.08367034102707294
RQADKVWRL	9	Unmodified	_RQADKVWRL_					0	0	0		nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;NFIC|p.P456Lfs*36|1|0.3|ENSG00000141905|chr19:3453855-3453855|C/-|frameshift_variant;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000147862|O00712-4|NFIB;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000147862|ENST00000380953|NFIB;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX	nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000008441|Q14938-6|NFIX	nc|ENSG00000141905|P08651-4|NFIC	MULTI-MSMS	HCT116MG_D190212_S1	1	586.3383178710938	2	586.338364	1170.66217	0.62109	0.00036417	-0.23514	-0.00013787	0.38595	0.0002263	586.3380170974586	34.363	0.26047	34.363	34.233	34.493	0					7	4	2	0	0	0	0.0041644	1	12754	12754		148.27	88.194	1	12820000			28068	3736;4532;9366	17861	17954	26951	26951					0.08367034102707294
RQADKVWRL	9	Unmodified	_RQADKVWRL_					0	0	0		nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;NFIC|p.P456Lfs*36|1|0.3|ENSG00000141905|chr19:3453855-3453855|C/-|frameshift_variant;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000147862|O00712-4|NFIB;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000147862|ENST00000380953|NFIB;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX	nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000008441|Q14938-6|NFIX	nc|ENSG00000141905|P08651-4|NFIC	MULTI-MSMS	HCT116MG_D190212_S2	2	391.22802734375	3	391.228001	1170.66217	0.36454	0.00014262	-0.039093	-1.5294E-05	0.32545	0.00012732	391.22793039826826	34.547	0.36157	34.377	34.18	34.542	-0.17014					20	6	4	0	0	0	7.5242E-05	1	12853	12853		173.14	114.09	1	142810000			28069	3736;4532;9366	17861	17954	26952	26952					0.08367034102707294
RQADKVWRL	9	Unmodified	_RQADKVWRL_					0	0	0		nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;NFIC|p.P456Lfs*36|1|0.3|ENSG00000141905|chr19:3453855-3453855|C/-|frameshift_variant;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000147862|O00712-4|NFIB;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000147862|ENST00000380953|NFIB;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX	nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000008441|Q14938-6|NFIX	nc|ENSG00000141905|P08651-4|NFIC	MULTI-MSMS	HCT116MG_D190212_S2	2	586.3387451171875	2	586.338364	1170.66217	0.80602	0.0004726	0.063509	3.7238E-05	0.86953	0.00050984	586.3385262339725	34.532	0.36157	34.356	34.175	34.537	-0.17512					15	6	3	0	0	0	0.0019609	1	12862	12862		187.3	118.19	1	87780000			28070	3736;4532;9366	17861	17954	26953	26953					0.08367034102707294
RQDLLLSLLK	10	Unmodified	_RQDLLLSLLK_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MSMS	HCT116MG_D190212_S1	1	400.2540588378906	3	400.255446	1197.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.655	1	53.655	53.155	54.155	0								0	0	0	0.96337	1	20553	20553		1.7423	0	1		+		28071	13414	17862	17955	26954	26954					0.15354511391001324
RQFTHLPDTE	10	Unmodified	_RQFTHLPDTE_					0	0	0		ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000486457.5_1_3:113557756-113601627:+|nuORF;GRAMD1C|p.F242Lfs*10|1|0.04|ENSG00000178075|chr3:113904208-113904209|-/GATAATAAATGGACTACTG|frameshift_variant	ENSG00000178075|ENST00000358160|GRAMD1C	ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-MSMS	HCT116MG_D190212_S2	2	415.2070007324219	3	415.207043	1242.5993	0.08108	3.3665E-05	-0.29962	-0.0001244	-0.21854	-9.0738E-05	415.20687162258065	27.145	0.21	26.792	26.713	26.923	-0.35254					5	3	2	0	0	0	0.82043	1	9883	9883		10.315	0.55098	1	11581000			28072	5485	17863	17956	26955	26955					-0.012295764760210659
RQGPGGHGL	9	Unmodified	_RQGPGGHGL_					0	0	0		ARID1A|p.H203Qfs*197|1|0.65|ENSG00000117713|chr1:26697010-26697011|-/A|frameshift_variant	ARID1A|p.H203Qfs*197|1|0.65|ENSG00000117713|chr1:26697010-26697011|-/A|frameshift_variant	ARID1A|p.H203Qfs*197|1|0.65|ENSG00000117713|chr1:26697010-26697011|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	439.7329406738281	2	439.7332	877.451848	0.063777	2.8045E-05	-0.11638	-5.1176E-05	-0.052603	-2.3131E-05	439.7330306623145	17.928	0.31336	17.571	17.388	17.702	-0.35647					7	5	2	0	0	0	0.64512	1	6159	6159		8.5933	0	1	3805500			28073	184	17864	17957	26956	26956					0.008219965005196173
RQIDQFLVV	9	Unmodified	_RQIDQFLVV_					0	0	0		MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3;ENST00000531261.1_1_11:62365080-62365595:-|nuORF;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.I556Hfs*8|1|0.29|ENSG00000149480|chr11:62594543-62594544|-/C|frameshift_variant;MTA2|p.A568Qfs*29|1|0.23|ENSG00000149480|chr11:62594402-62594402|T/-|frameshift_variant;ENSG00000149480|ENST00000278823|MTA2	MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant	MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	559.3219604492188	2	559.321848	1116.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.977	1	52.788	52.288	53.288	-0.18922								0	0	0	0.034054	1	20363	20363		78.728	6.8058	1				28074	1094	17865	17958	26957	26957					0.07549407259989493
RQIEDRHAT	9	Unmodified	_RQIEDRHAT_					0	0	0			REV__nc|ENSG00000122966|O14578-3|CIT	REV__nc|ENSG00000122966|O14578-3|CIT	MULTI-MSMS	HCT116MG_D190212_S2	2	375.8633117675781	3	375.863499	1124.56867	-0.31828	-0.00011963	-0.24308	-9.1364E-05	-0.56136	-0.00021099	375.8631766251331	10.594	0.245	10.32	10.191	10.436	-0.27365					15	9	2	0	0	0	0.71058	1	3357	3357		4.5289	0	1	365210	+		28075	11752	17866	17959	26958	26958					0.011366899296035626
RQIEVLTTV	9	Unmodified	_RQIEVLTTV_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MULTI-MSMS	HCT116MG_D190212_S1	1	529.8150024414062	2	529.813856	1057.61316	0.72213	0.0003826	0.25709	0.00013621	0.97922	0.00051881	529.8139785618388	41.576	0.26036	41.576	41.445	41.706	0					10	4	3	0	0	0	0.023778	1	15664	15664		92.653	36.476	1	27155000			28076	3559	17867	17960	26959	26959					0.08665701023051042
RQIEVLTTV	9	Unmodified	_RQIEVLTTV_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MULTI-MSMS	HCT116MG_D190212_S2	2	529.814208984375	2	529.813856	1057.61316	0.60606	0.0003211	-0.041648	-2.2066E-05	0.56441	0.00029903	529.8137665967797	41.592	0.30799	41.523	41.345	41.653	-0.068199					13	5	3	0	0	0	0.034046	1	15724	15724		82.529	26.352	1	88661000			28077	3559	17867	17960	26960	26960					0.08665701023051042
RQIVKKYT	8	Unmodified	_RQIVKKYT_					0	0	0		SLC24A1|p.N798Mfs*24|1|0.04|ENSG00000074621|chr15:65650539-65650539|A/-|frameshift_variant;ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1	SLC24A1|p.N798Mfs*24|1|0.04|ENSG00000074621|chr15:65650539-65650539|A/-|frameshift_variant	SLC24A1|p.N798Mfs*24|1|0.04|ENSG00000074621|chr15:65650539-65650539|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	518.3173217773438	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.742	1	40.742	40.242	41.242	0								0	0	0	0.8837	1	15322	15322		4.756	0.42677	1				28078	1299	17868	17961	26961	26961					0.10773728468188892
RQKAENFWTG	10	Unmodified	_RQKAENFWTG_					0	0	0		ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant;ITPRIPL1|p.V370Cfs*11|1|0.08|ENSG00000198885|chr2:96327735-96327735|G/-|frameshift_variant;nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1;ENSG00000198885|ENST00000439118|ITPRIPL1;nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant	ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	412.87579345703125	3	412.875516	1235.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.49	1	11.49	10.99	11.99	0								0	0	0	0.96937	1	3621	3621		0.13989	0	1				28079	6292	17869	17962	26962	26962					-0.003658528935375216
RQKAENFWTG	10	Unmodified	_RQKAENFWTG_					0	0	0		ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant;ITPRIPL1|p.V370Cfs*11|1|0.08|ENSG00000198885|chr2:96327735-96327735|G/-|frameshift_variant;nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1;ENSG00000198885|ENST00000439118|ITPRIPL1;nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant	ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	412.8758544921875	3	412.875516	1235.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.054	1	12.054	11.554	12.554	0								0	0	0	0.96937	1	3842	3842		0.13989	0	1				28080	6292	17869	17962	26963	26963					-0.003658528935375216
RQKAENFWTG	10	Unmodified	_RQKAENFWTG_					0	0	0		ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant;ITPRIPL1|p.V370Cfs*11|1|0.08|ENSG00000198885|chr2:96327735-96327735|G/-|frameshift_variant;nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1;ENSG00000198885|ENST00000439118|ITPRIPL1;nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant	ITPRIPL1|p.L296Ffs*5|1|0.33|ENSG00000198885|chr2:96327516-96327517|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	412.87579345703125	3	412.875516	1235.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.207	1	13.207	12.707	13.707	0								0	0	0	0.96937	1	4280	4280		0.13989	0	1				28081	6292	17869	17962	26964	26964					-0.003658528935375216
RQKLARKET	9	Unmodified	_RQKLARKET_					0	0	0			REV__SUCO|p.R1204Q|1|0.36|ENSG00000094975|chr1:172610105-172610105|G/A|missense_variant	REV__SUCO|p.R1204Q|1|0.36|ENSG00000094975|chr1:172610105-172610105|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	377.2330017089844	3	377.231523	1128.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.352	1	42.352	41.852	42.852	0								0	0	0	0.76954	1	15972	15972		2.4985	1.1688	1		+		28082	17602	17870	17963	26965	26965					0.11355016757124758
RQKPTKLI	8	Unmodified	_RQKPTKLI_					0	0	0			REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	MULTI-MSMS	HCT116MG_D190212_S1	1	492.41650390625	2	492.321651	982.62875	0.24486	0.00012055	0.55286	0.00027218	0.79772	0.00039273	492.32181385317546	58.416	0.50776	58.416	58.261	58.769	0					14	9	3	0	0	0	0.87685	1	22643	22643		0.6015	0.076735	1	39765000	+		28083	12191	17871	17964	26966	26966					0.136740323308004
RQKSKTLIR	9	Unmodified	_RQKSKTLIR_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MSMS	HCT116MG_D190212_S1	1	377.201171875	3	377.243652	1128.70913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.282	1	58.282	57.782	58.782	0								0	0	0	0.77018	1	22447	22447		0.26902	0	1				28084	1918	17872	17965	26967	26967					0.14991893653836996
RQKSLLSLLPL	11	Unmodified	_RQKSLLSLLPL_					0	0	0		WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant;WDFY4|p.E2278Kfs*20|2|0.3|ENSG00000128815|chr10:48873577-48873577|G/-|frameshift_variant;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-2|WDFY4;WDFY4|p.L901Sfs*22|1|0.22|ENSG00000128815|chr10:48774601-48774601|C/-|frameshift_variant;WDFY4|p.R948Tfs*54|1|0.33|ENSG00000128815|chr10:48775775-48775776|-/CA|frameshift_variant;nc|ENSG00000128815|Q6ZS81-3|WDFY4	WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant	WDFY4|p.Q1607Sfs*14|1|0.47|ENSG00000128815|chr10:48807934-48807934|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	423.2750244140625	3	423.274729	1266.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.286	1	61.026	60.526	61.526	-0.2602								0	0	0	0.9613	1	23116	23116		0.40827	0.24894	1				28085	3014	17873	17966	26968	26968					0.17962773316435232
RQKVRKRKRKP	11	Unmodified	_RQKVRKRKRKP_					0	0	0			REV__ENST00000519559.1_1_8:52732913-52752014:-|nuORF	REV__ENST00000519559.1_1_8:52732913-52752014:-|nuORF	MSMS	HCT116MG_D190212_S4	4	493.99749755859375	3	493.998815	1478.97462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.329	1	36.945	36.445	37.445	-0.3839								0	0	0	0.96192	1	13695	13695		0.08335	0.08335	1		+		28086	13195	17874	17967	26969	26969					0.25428782567155395
RQLEKLKEV	9	Unmodified	_RQLEKLKEV_					0	0	0		ENST00000345117.2_1_8:42693107-42698298:-|nuORF;ENSG00000131931|ENST00000254250|THAP1	ENST00000345117.2_1_8:42693107-42698298:-|nuORF	ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	381.5680847167969	3	381.567912	1141.68191	-0.16315	-6.2252E-05	-0.016893	-6.4457E-06	-0.18004	-6.8698E-05	381.5680640063002	23.08	0.15636	23.08	23.001	23.158	0					4	2	2	0	0	0	0.49728	1	8231	8231		17.049	4.1926	1	4886800			28087	3162	17875	17968	26970	26970					0.11673365322781137
RQLEKLKEV	9	Unmodified	_RQLEKLKEV_					0	0	0		ENST00000345117.2_1_8:42693107-42698298:-|nuORF;ENSG00000131931|ENST00000254250|THAP1	ENST00000345117.2_1_8:42693107-42698298:-|nuORF	ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	381.56787109375	3	381.567912	1141.68191	-0.050045	-1.9096E-05	-0.1345	-5.1322E-05	-0.18455	-7.0418E-05	381.5677640481157	23.813	0.20856	23.429	23.299	23.508	-0.38324					6	3	2	0	0	0	0.43045	1	8522	8522		20.871	7.3525	1	7755900			28088	3162	17875	17968	26971	26971					0.11673365322781137
RQLEPWGLEY	10	Unmodified	_RQLEPWGLEY_					0	0	0		PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	PRUNE2|p.L2591Qfs*12|1|0.19|ENSG00000106772|chr9:76703839-76703842|CTAA/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.8883056640625	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.374	1	13.443	12.943	13.943	0.069158								0	0	0	0.96804	1	4236	4236		0.69767	0.19171	1				28089	2096	17876	17969	26972	26972					0.007201845634881465
RQLILVKLLP	10	Unmodified	_RQLILVKLLP_					0	0	0			REV__LRRC66|p.K220Nfs*5|1|0.45|ENSG00000188993|chr4:52003229-52003229|T/-|frameshift_variant	REV__LRRC66|p.K220Nfs*5|1|0.45|ENSG00000188993|chr4:52003229-52003229|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	398.2536315917969	3	398.276181	1191.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.41	1	58.141	57.641	58.641	-0.26932								0	0	0	0.96263	1	22219	22219		1.9064	1.2087	1		+		28090	13984	17877	17970	26973	26973					0.21848282529981589
RQLLHKRK	8	Unmodified	_RQLLHKRK_					0	0	0			REV__ENST00000581444.5_1_18:20956852-20964997:-|nuORF	REV__ENST00000581444.5_1_18:20956852-20964997:-|nuORF	MSMS	HCT116MG_D190212_S3	3	360.32904052734375	3	360.23672	1077.68833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.77	1	58.506	58.006	59.006	-0.26405								0	0	0	0.8837	1	22364	22364		0.40072	0	1		+		28091	16626	17878	17971	26974	26974					0.15259348064842015
RQLLLIQR	8	Unmodified	_RQLLLIQR_					0	0	0			REV__ENST00000504920.5_1_4:7065798-7065906:-|nuORF	REV__ENST00000504920.5_1_4:7065798-7065906:-|nuORF	MSMS	HCT116MG_D190212_S2	2	520.34033203125	2	520.340375	1038.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.432	1	58.262	57.762	58.762	-0.1703								0	0	0	0.8837	1	22583	22583		0.69038	0	1		+		28092	16135	17879	17972	26975	26975					0.14841123596397665
RQLLRRYRQRE	11	Unmodified	_RQLLRRYRQRE_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.G2015Vfs*36|2|0.33|ENSG00000261150|chr8:143867210-143867210|C/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	HCT116MG_D190212_S2	2	525.7918090820312	3	525.309718	1572.90732	0.42486	0.00022318	0.0038874	2.0421E-06	0.42874	0.00022522	525.3095912696062	55.529	1.5372	55.343	54.205	55.742	-0.18565					93	29	6	0	0	0	0.36614	1	21217	21217		0.40827	0.041592	1	138880000			28093	6627	17880	17973	26976	26976					0.14378707565538207
RQLRKISIDQF	11	Unmodified	_RQLRKISIDQF_					0	0	0			REV__ENSG00000243509|ENST00000369996|TNFRSF6B	REV__ENSG00000243509|ENST00000369996|TNFRSF6B	MULTI-MSMS	HCT116MG_D190212_S1	1	468.6087951660156	3	468.60877	1402.80448	0.47017	0.00022033	-0.31295	-0.00014665	0.15722	7.3673E-05	468.60855279967245	28.309	0.26442	28.309	28.164	28.429	0					12	4	3	0	0	0	0.72594	1	10327	10327		12.228	4.7505	1	19600000	+		28094	14364	17881	17974	26977	26977					0.11919202054218658
RQPDSGISSI	10	Unmodified	_RQPDSGISSI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2750854492188	2	530.275095	1058.53564	0.31042	0.00016461	-0.22742	-0.00012059	0.083005	4.4015E-05	530.2749761586214	32.51	0.46828	32.28	31.995	32.463	-0.23009					13	8	2	0	0	0	0.079802	1	12030	12030		78.06	10.222	1	22822000			28095	4645	17882	17975	26978	26978					0.008710630869245506
RQPGMPSTPAP	11	Unmodified	_RQPGMPSTPAP_					0	0	0			REV__ENST00000560288.1_1_15:51040303-51057772:-|nuORF	REV__ENST00000560288.1_1_15:51040303-51057772:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	569.7879638671875	2	569.787315	1137.56008	0.37955	0.00021626	-0.51221	-0.00029185	-0.13266	-7.5588E-05	569.7870523057571	28.278	0.72996	28.072	27.655	28.385	-0.20593					26	13	3	0	0	0	0.70377	1	10141	10141		20.415	2.2682	1	6142400	+		28096	16486	17883	17976	26979	26979					-0.0032000003120629117
RQPGMPSTPAP	11	Unmodified	_RQPGMPSTPAP_					0	0	0			REV__ENST00000560288.1_1_15:51040303-51057772:-|nuORF	REV__ENST00000560288.1_1_15:51040303-51057772:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	570.2894897460938	2	569.787315	1137.56008	0.52425	0.00029871	-0.31183	-0.00017768	0.21243	0.00012104	570.2884658283106	28.289	0.62412	27.957	27.648	28.272	-0.33138					20	11	2	0	0	0	0.71776	1	10140	10140		15.248	2.206	1	4055800	+		28097	16486	17883	17976	26980	26980					-0.0032000003120629117
RQPKRRQL	8	Unmodified	_RQPKRRQL_					0	0	0			REV__ENST00000265734.8_1_7:92462770-92462977:-|nuORF	REV__ENST00000265734.8_1_7:92462770-92462977:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	541.3377685546875	2	541.338698	1080.66284	0.33789	0.00018292	-1.2909	-0.00069882	-0.95302	-0.00051591	541.3379608130504	50.952	0.62049	50.952	50.626	51.246	0					15	11	2	0	0	0	0.84759	1	19496	19496		5.7604	0	1	8424900	+		28098	14674	17884	17977	26981	26981					0.12573873542419278
RQPRPTRRRRP	11	Unmodified	_RQPRPTRRRRP_					0	0	0			REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	738.4483642578125	2	738.448166	1474.88178	0.83199	0.00061438	0.20503	0.0001514	1.037	0.00076578	738.4481695550694	52.578	1.7013	52.578	51.451	53.153	0					74	32	3	0	0	0	0.74191	1	20192	20192		0.30703	0	1	354360000	+		28099	14565	17885	17978	26982	26982					0.1633327783376899
RQPRPTRRRRP	11	Unmodified	_RQPRPTRRRRP_					0	0	0			REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	492.6341552734375	3	492.634536	1474.88178	0.44862	0.000221	0.16515	8.136E-05	0.61377	0.00030236	492.6345306457638	53.84	2.6071	53.84	52.742	55.349	0					165	50	4	0	0	0	0.74191	1	21070	21070		0.08335	0	1	1040799999.9999999	+		28100	14565	17885	17978	26983	26983					0.1633327783376899
RQPRPTRRRRP	11	Unmodified	_RQPRPTRRRRP_					0	0	0			REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	738.4481201171875	2	738.448166	1474.88178	0.9013	0.00066556	0.053541	3.9537E-05	0.95484	0.0007051	738.4481181912531	53.848	2.1963	53.848	53.153	55.349	0					169	42	5	0	0	0	0.74191	1	21149	21149		0.30703	0	1	3168399999.9999995	+		28101	14565	17885	17978	26984	26984					0.1633327783376899
RQPRPTRRRRP	11	Unmodified	_RQPRPTRRRRP_					0	0	0			REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	492.6346740722656	3	492.634536	1474.88178	0.29482	0.00014524	0.25196	0.00012412	0.54678	0.00026936	492.63454638024047	54.643	2.8233	54.453	52.553	55.376	-0.1894					151	54	5	0	0	0	0.74191	1	21141	21141		0.40827	0.40827	1	466930000	+		28102	14565	17885	17978	26985	26985					0.1633327783376899
RQQRRRFRFHH	11	Unmodified	_RQQRRRFRFHH_					0	0	0		ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	ENST00000593149.5_1_19:39109743-39110988:+|nuORF	MSMS	HCT116MG_D190212_S1	1	812.0064697265625	2	812.45124	1622.88793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.464	1	48.464	47.964	48.964	0								0	0	0	0.96208	1	18442	18442		0	0	1				28103	9046	17886	17979	26986	26986					0.10139796065300288
RQREPIRHQL	10	Unmodified	_RQREPIRHQL_					0	0	0			REV__ENST00000368218.8_2_1:156698707-156698803:+|nuORF	REV__ENST00000368218.8_2_1:156698707-156698803:+|nuORF	MSMS	HCT116MG_D190212_S4	4	666.8849487304688	2	666.884001	1331.75345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.719	1	35.333	34.833	35.833	-0.38606								0	0	0	0.95648	1	13049	13049		3.2813	0.28607	1		+		28104	15130	17887	17980	26987	26987					0.10084297800040076
RQRGLAAP	8	Unmodified	_RQRGLAAP_					0	0	0		ENST00000579243.1_1_17:72916650-72919343:-|nuORF	ENST00000579243.1_1_17:72916650-72919343:-|nuORF	ENST00000579243.1_1_17:72916650-72919343:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	434.7594299316406	2	434.759218	867.503883	0.18343	7.9747E-05	0.27578	0.0001199	0.45921	0.00019965	434.7592572336102	48.208	2.026	47.841	47.285	49.311	-0.36728					121	48	5	0	0	0	0.86564	2	17896	17896;18112		2.5775	0	1	410900000			28105	8946	17888	17981	26988;26989	26988					0.06483159914284897
RQRPPSIV	8	Unmodified	_RQRPPSIV_					0	0	0			REV__ENST00000331203.6_1_2:112896141-112922743:+|nuORF	REV__ENST00000331203.6_1_2:112896141-112922743:+|nuORF	MSMS	HCT116MG_D190212_S2	2	476.785888671875	2	476.787976	951.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.567	1	35.424	34.924	35.924	-0.14245								0	0	0	0.8837	1	13271	13271		7.9102	0	1		+		28106	14930	17889	17982	26990	26990					0.08368002119846096
RQRQLRIY	8	Unmodified	_RQRQLRIY_					0	0	0			REV__ENST00000463740.5_1_9:136215098-136217195:+|nuORF	REV__ENST00000463740.5_1_9:136215098-136217195:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	566.8375244140625	2	566.838531	1131.66251	0.45643	0.00025872	-0.68135	-0.00038622	-0.22492	-0.00012749	566.837995529877	52.922	0.61647	52.922	52.587	53.204	0					31	11	5	0	0	0	0.79062	1	20236	20236		12.532	0	1	575590000	+		28107	12537	17890	17983	26991	26991					0.1019445382255526
RQRQWRERERQ	11	Unmodified	_RQRQWRERERQ_					0	0	0			REV__nc|ENSG00000146122|Q86T65-4|DAAM2	REV__nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	HCT116MG_D190212_S1	1	814.4364013671875	2	814.435452	1626.85635	0.88165	0.00071805	0.46742	0.00038069	1.3491	0.0010987	814.4356423114416	27.775	0.46687	27.775	27.49	27.956	0					26	8	5	0	0	0	0.74191	1	10070	10070		2.7352	1.4057	1	71127000	+		28108	12475	17891	17984	26992	26992					0.06799758520651267
RQRQWRERERQ	11	Unmodified	_RQRQWRERERQ_					0	0	0			REV__nc|ENSG00000146122|Q86T65-4|DAAM2	REV__nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	814.435452	1626.85635	0.88424	0.00072015	0.79711	0.0006492	1.6813	0.0013693	814.9371224844733	28.023	0.20707	27.693	27.563	27.77	-0.32987	-0.041144	0.00039268	NaN	2.7352	9	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20689000	+		28109	12475	17891	17984							0.06799758520651267
RQRRRARRLH	10	Unmodified	_RQRRRARRLH_					0	0	0		sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1;sp|F5HB41|US30_HCMVMUncharacterizedproteinUS30OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	468.9598388671875	3	468.959242	1403.8559	0.091274	4.2804E-05	-0.0045399	-2.129E-06	0.086735	4.0675E-05	468.95916607490346	51.229	1.0777	51.229	50.472	51.549	0					64	20	4	0	0	0	0.89372	1	19351	19351		0.15932	0.15932	1	189710000			28110	18192	17892	17985	26993	26993					0.17012428382167855
RQRRRARRLH	10	Unmodified	_RQRRRARRLH_					0	0	0		sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1;sp|F5HB41|US30_HCMVMUncharacterizedproteinUS30OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	468.9590759277344	3	468.959242	1403.8559	0.11818	5.5422E-05	0.11032	5.1738E-05	0.2285	0.00010716	468.9592226376731	53.549	2.5215	53.359	52.242	54.764	-0.1894					188	48	5	0	0	0	0.89149	2	20785	20785;21019		0.69767	0.69767	1	535600000			28111	18192	17892	17985	26994;26995	26994					0.17012428382167855
RQRRRARRLH	10	Unmodified	_RQRRRARRLH_					0	0	0		sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1;sp|F5HB41|US30_HCMVMUncharacterizedproteinUS30OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	468.959242	1403.8559	0.11818	5.5422E-05	0.11032	5.1738E-05	0.2285	0.00010716	468.9592226376731	53.549	2.5215	53.359	52.242	54.764	-0.1894	-0.18775	1.3823E-05	NaN	0.69767	188	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535600000			28112	18192	17892	17985							0.17012428382167855
RQRRRARRLH	10	Unmodified	_RQRRRARRLH_					0	0	0		sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1;sp|F5HB41|US30_HCMVMUncharacterizedproteinUS30OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	468.959242	1403.8559	0.14234	6.6752E-05	0.1218	5.7119E-05	0.26414	0.00012387	468.95922862891405	53.941	3.0167	53.612	51.639	54.655	-0.32923	0.064983	2.9968E-05	NaN	0.69767	163	57	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47080000			28113	18192	17892	17985							0.17012428382167855
RQRVGGLG	8	Unmodified	_RQRVGGLG_					0	0	0		ENST00000564063.1_1_1:108742589-108743207:+|nuORF	ENST00000564063.1_1_1:108742589-108743207:+|nuORF	ENST00000564063.1_1_1:108742589-108743207:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	842.4959716796875	1	842.49551	841.488233	0.70543	0.00059432	0.37174	0.00031319	1.0772	0.00090751	842.4956486335332	42.145	1.2639	41.769	41.285	42.549	-0.37565					39	29	2	0	0	0	0.87576	1	15443	15443		0.79363	0	1	3051800			28114	8841	17893	17986	26996	26996					0.0611487339725727
RQSRRPRRRRR	11	Unmodified	_RQSRRPRRRRR_					0	0	0		ENST00000514738.5_1_5:31193871-31267519:+|nuORF	ENST00000514738.5_1_5:31193871-31267519:+|nuORF	ENST00000514738.5_1_5:31193871-31267519:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	527.329345703125	3	527.328217	1578.96282	0.51858	0.00027346	0.88115	0.00046466	1.3997	0.00073812	527.3290767046341	56.177	0.62189	55.994	55.796	56.418	-0.18261					17	11	2	0	0	0	0.74191	1	21698	21698		0.094841	0	1	11995000			28115	8523	17894	17987	26997	26997					0.19649978596521578
RQTRPVVT	8	Unmodified	_RQTRPVVT_					0	0	0			REV__ENST00000492901.1_1_17:1619865-1633782:+|nuORF	REV__ENST00000492901.1_1_17:1619865-1633782:+|nuORF	MSMS	HCT116MG_D190212_S1	1	478.7861328125	2	478.785433	955.556313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.595	1	47.595	47.095	48.095	0								0	0	0	0.8837	1	18088	18088		5.2307	0	1		+		28116	16058	17895	17988	26998	26998					0.07675698257230579
RQTVQEPQSGP	11	Unmodified	_RQTVQEPQSGP_					0	0	0			REV__ENSG00000157600|ENST00000372068|TMEM164	REV__ENSG00000157600|ENST00000372068|TMEM164	MSMS	HCT116MG_D190212_S3	3	613.8103637695312	2	613.809833	1225.60511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.445	1	44.137	43.637	44.637	-0.30759								0	0	0	0.89672	1	16615	16615		20.415	3.3016	1		+		28117	12757	17896	17989	26999	26999					0.0013352203566228127
RQVEKAWAL	9	Unmodified	_RQVEKAWAL_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	550.814208984375	2	550.81419	1099.61383	0.33182	0.00018277	-0.99003	-0.00054532	-0.65821	-0.00036255	550.8140657944435	38.55	0.73376	38.466	38.278	39.012	-0.084618					15	13	2	0	0	0	0.090581	1	14512	14512		60.074	10.141	1	29752000			28118	1198	17897	17990	27000	27000					0.06800540462791105
RQVLKSSR	8	Unmodified	_RQVLKSSR_					0	0	0		CHGB|p.T63S|1|0.38|ENSG00000089199|chr20:5916916-5916916|A/T|missense_variant	CHGB|p.T63S|1|0.38|ENSG00000089199|chr20:5916916-5916916|A/T|missense_variant	CHGB|p.T63S|1|0.38|ENSG00000089199|chr20:5916916-5916916|A/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	487.2994384765625	2	487.298707	972.582862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.22	1	53.895	53.395	54.395	-0.32449								0	0	0	0.8837	1	20267	20267		4.756	0	1				28119	435	17898	17991	27001	27001					0.09547387148563757
RQWQHQYRQWQ	11	Unmodified	_RQWQHQYRQWQ_					0	0	0			REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF	REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF	MSMS	HCT116MG_D190212_S2	2	822.3983764648438	2	822.400547	1642.78654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.735	1	28.419	27.919	28.919	-0.31613								0	0	0	0.9598	1	10495	10495		1.1933	0.88631	1		+		28120	16608	17899	17992	27002	27002					-0.009141201479224037
RQYAKDIG	8	Unmodified	_RQYAKDIG_					0	0	0		ENST00000401543.2_1_9:90140306-90140387:+|nuORF;ENST00000557367.2_1_14:50050387-50052826:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000401543.2_1_9:90140306-90140387:+|nuORF	ENST00000401543.2_1_9:90140306-90140387:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	475.7562561035156	2	475.756341	949.498129	0.10813	5.1444E-05	0.27622	0.00013141	0.38435	0.00018286	475.7562986131075	18.792	0.2606	18.792	18.61	18.871	0					10	4	3	0	0	0	0.15825	1	6483	6483		81.89	36.191	1	15183000			28121	6420	17900	17993	27003	27003					0.021360166119393398
RRAALAAT	8	Unmodified	_RRAALAAT_					0	0	0			REV__ENST00000286800.7_1_21:30671193-30693553:+|nuORF	REV__ENST00000286800.7_1_21:30671193-30693553:+|nuORF	MSMS	HCT116MG_D190212_S4	4	415.2536926269531	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.116	1	61.861	61.361	62.361	-0.25457								0	0	0	0.8837	1	23450	23450		0.69038	0	1		+		28122	14731	17901	17994	27004	27004					0.07187757539963968
RRAALLPL	8	Unmodified	_RRAALLPL_					0	0	0		ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	455.30377197265625	2	455.303262	908.59197	0.0020508	9.3374E-07	1.2782	0.00058195	1.2802	0.00058289	455.30366698292426	58.743	0.40804	58.743	58.463	58.871	0					11	7	3	0	0	0	0.86564	1	22674	22674		2.5775	0	1	25283000			28123	7881	17902	17995	27005	27005					0.1340178050488703
RRAALLPL	8	Unmodified	_RRAALLPL_					0	0	0		ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	455.303262	908.59197	0.18966	8.6351E-05	0.26248	0.00011951	0.45214	0.00020586	455.3032702978546	58.782	0.25826	58.617	58.454	58.713	-0.1653	-0.063362	-0.00038884	NaN	2.5775	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5210400			28124	7881	17902	17995							0.1340178050488703
RRAARRRK	8	Unmodified	_RRAARRRK_					0	0	0			REV__TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant	REV__TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	357.2356262207031	3	357.235713	1068.68531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.39	1	62.159	61.659	62.659	-0.23129								0	0	0	0.8837	1	23832	23832		0	0	1		+		28125	17644	17903	17996	27006	27006					0.15371517730682172
RRAARRRK	8	Unmodified	_RRAARRRK_					0	0	0			REV__TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant	REV__TMEM119|p.G146Afs*114|1|0.22|ENSG00000183160|chr12:108591947-108591947|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	357.23553466796875	3	357.235713	1068.68531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.554	1	62.305	61.805	62.805	-0.24919								0	0	0	0.8837	1	23622	23622		0	0	1		+		28126	17644	17903	17996	27007	27007					0.15371517730682172
RRAGAVHTL	9	Unmodified	_RRAGAVHTL_					0	0	0		FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1	FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	490.7912902832031	2	490.79105	979.567546	0.34811	0.00017085	0.36702	0.00018013	0.71513	0.00035098	490.7911797384471	18.272	0.20869	18.272	18.141	18.35	0					5	3	2	0	0	0	0.1037	1	6276	6276		57.471	21.427	1	12519000			28127	2360	17904	17997	27008	27008					0.07694520351378742
RRAGAVHTL	9	Unmodified	_RRAGAVHTL_					0	0	0		FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant;ENSG00000112787|ENST00000680143|FBRSL1	FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	490.7911376953125	2	490.79105	979.567546	0.25967	0.00012745	-0.081334	-3.9918E-05	0.17834	8.7528E-05	490.7910009180185	19.231	0.36469	18.862	18.732	19.096	-0.3695					15	6	4	0	0	0	0.0060607	1	6657	6657		128.37	39.462	1	116750000			28128	2360	17904	17997	27009	27009					0.07694520351378742
RRAGPALA	8	Unmodified	_RRAGPALA_					0	0	0			REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	812.0885620117188	1	811.489696	810.48242	0.77535	0.00062919	-0.075812	-6.152E-05	0.69954	0.00056767	811.4896283681907	47.672	0.2966	47.672	47.492	47.789	0					10	5	2	0	0	0	0.87576	1	18137	18137		0.79363	0	1	182790000	+		28129	14720	17905	17998	27010	27010					0.06959774885535808
RRAGPALA	8	Unmodified	_RRAGPALA_					0	0	0			REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	406.2488708496094	2	406.248486	810.48242	0.1014	4.1194E-05	-0.01233	-5.0091E-06	0.089072	3.6185E-05	406.2484206864925	48.151	1.7767	48.018	47.584	49.361	-0.13281					63	34	4	0	0	0	0.87576	1	18361	18361		0.79363	0	1	1488699999.9999998	+		28130	14720	17905	17998	27011	27011					0.06959774885535808
RRAKHCKNK	9	Unmodified	_RRAKHCKNK_					0	0	0			REV__ENSG00000104356|ENST00000401707|POP1	REV__ENSG00000104356|ENST00000401707|POP1	MSMS	HCT116MG_D190212_S4	4	380.89056396484375	3	380.889214	1139.64581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3275	1	4.063	3.563	4.563	-0.26456								0	0	0	0.7701	1	1328	1328		0.23584	0	1		+		28131	11210	17906	17999	27012	27012					0.08157629664947308
RRAKWRKRERY	11	Unmodified	_RRAKWRKRERY_					0	0	0		ALX3|p.T236Mfs*95|1|0.2|ENSG00000156150|chr1:110061451-110061451|G/-|frameshift_variant;ENSG00000156150|ENST00000647563|ALX3;ENSG00000180318|ENST00000316824|ALX1	ALX3|p.T236Mfs*95|1|0.2|ENSG00000156150|chr1:110061451-110061451|G/-|frameshift_variant;ENSG00000180318|ENST00000316824|ALX1	ALX3|p.T236Mfs*95|1|0.2|ENSG00000156150|chr1:110061451-110061451|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	802.9732055664062	2	802.971474	1603.92839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.75	1	32.539	32.039	33.039	-0.21135								0	0	0	0.96141	1	12128	12128		0.35063	0.35063	1				28132	119;5591	17907	18000	27013	27013					0.15058717665056065
RRAPEPRVI	9	Unmodified	_RRAPEPRVI_					0	0	0		ENSG00000166199|ENST00000302708|ALKBH3;ENST00000533200.5_1_11:43904193-43919192:+|nuORF;nc|ENSG00000166199|Q96Q83-2|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	MULTI-MSMS	HCT116MG_D190212_S1	1	365.2240905761719	3	365.22448	1092.65161	-0.11759	-4.2945E-05	-0.35063	-0.00012806	-0.46821	-0.000171	365.224276889234	22.786	0.26071	22.786	22.637	22.898	0					7	4	2	0	0	0	0.22946	1	8103	8103		29.437	14.189	1	3297200			28133	4828	17908	18001	27014	27014					0.10899051448268438
RRAPEPRVI	9	Unmodified	_RRAPEPRVI_					0	0	0		ENSG00000166199|ENST00000302708|ALKBH3;ENST00000533200.5_1_11:43904193-43919192:+|nuORF;nc|ENSG00000166199|Q96Q83-2|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	MULTI-MSMS	HCT116MG_D190212_S2	2	365.22430419921875	3	365.22448	1092.65161	-0.24405	-8.9132E-05	0.032172	1.175E-05	-0.21187	-7.7382E-05	365.2244236027676	23.601	0.25978	23.217	23.039	23.299	-0.38324					9	4	3	0	0	0	0.082877	1	8435	8435		57.108	21.495	1	16200000			28134	4828	17908	18001	27015	27015					0.10899051448268438
RRAPHLHTL	9	Unmodified	_RRAPHLHTL_					0	0	0		GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	550.8251953125	2	550.825424	1099.63629	0.494	0.00027211	-0.62915	-0.00034655	-0.13515	-7.4442E-05	550.8250483018315	19.952	0.15683	19.952	19.861	20.018	0					4	2	2	0	0	0	0.24895	1	6971	6971		36.127	15.673	1	3418000			28135	9177	17909	18002	27016	27016					0.09046184651083422
RRAPHLHTL	9	Unmodified	_RRAPHLHTL_					0	0	0		GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	367.55267333984375	3	367.552708	1099.63629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20	1	20	19.5	20.5	0								0	0	0	0.07135	1	6966	6966		57.722	19.107	1				28136	9177	17909	18002	27017	27017					0.09046184651083422
RRAPHLHTL	9	Unmodified	_RRAPHLHTL_					0	0	0		GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	367.55255126953125	3	367.552708	1099.63629	-0.23638	-8.6883E-05	-0.0040721	-1.4967E-06	-0.24045	-8.8379E-05	367.5526259607035	21.06	0.31237	20.677	20.494	20.807	-0.38288					16	5	4	0	0	0	0.042978	1	7392	7392		70.332	40.491	1	104870000			28137	9177	17909	18002	27018	27018					0.09046184651083422
RRAPHLHTL	9	Unmodified	_RRAPHLHTL_					0	0	0		GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	550.825439453125	2	550.825424	1099.63629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.064	1	20.681	20.181	21.181	-0.38288								0	0	0	0.0043193	1	7393	7393		118.89	68.962	1				28138	9177	17909	18002	27019	27019					0.09046184651083422
RRARLRKREAQ	11	Unmodified	_RRARLRKREAQ_					0	0	0		ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	MSMS	HCT116MG_D190212_S3	3	720.4423217773438	2	720.442549	1438.87055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.838	1	47.523	47.023	48.023	-0.31525								0	0	0	0.95343	1	17976	17976		4.5289	0.93237	1				28139	4568	17910	18003	27020	27020					0.16866455739636876
RRARPLERP	9	Unmodified	_RRARPLERP_					0	0	0		HEYL|p.A255V|1|0.33|ENSG00000163909|chr1:39626730-39626730|G/A|missense_variant;ENSG00000163909|ENST00000372852|HEYL	HEYL|p.A255V|1|0.33|ENSG00000163909|chr1:39626730-39626730|G/A|missense_variant	HEYL|p.A255V|1|0.33|ENSG00000163909|chr1:39626730-39626730|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	384.2354431152344	3	384.235379	1149.68431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.179	1	52.179	51.679	52.679	0								0	0	0	0.76995	1	19951	19951		1.0715	0	1				28140	4646	17911	18004	27021	27021					0.11545258571118211
RRCDPSLTSAL	11	Unmodified	_RRCDPSLTSAL_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	HCT116MG_D190212_S2	2	609.8284912109375	2	609.816604	1217.61866	0.7186	0.00043821	-0.25554	-0.00015583	0.46306	0.00028238	609.8163442326802	41.633	0.36018	41.565	41.396	41.756	-0.068195					14	6	3	0	0	0	0.36495	1	15745	15745		2.9952	2.4705	1	29341000	+		28141	13049	17912	18005	27022	27022					0.018550565432633448
RRDFQIRVL	9	Unmodified	_RRDFQIRVL_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	HCT116MG_D190212_S2	2	401.57550048828125	3	401.575401	1201.70437	-0.084633	-3.3987E-05	0.11588	4.6535E-05	0.031248	1.2549E-05	401.5753661571561	38.893	0.25849	38.808	38.65	38.909	-0.084618					10	4	3	0	0	0	0.040372	1	14634	14634		79.427	53.406	1	19945000			28142	3182	17913	18006	27023	27023					0.1115900951108415
RRDGQILVY	9	Unmodified	_RRDGQILVY_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	560.971435546875	2	560.317097	1118.61964	0.66849	0.00037457	-0.52368	-0.00029343	0.14481	8.1138E-05	560.316997317007	35.796	0.25681	35.654	35.489	35.746	-0.14245					10	4	3	0	0	0	0.15584	1	13376	13376		41.956	7.5538	1	15146000			28143	2330	17914	18007	27024	27024					0.06507638974449037
RRDKEAELQ	9	Unmodified	_RRDKEAELQ_					0	0	0		ENSG00000221926|ENST00000649191|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	MSMS	HCT116MG_D190212_S4	4	382.20660400390625	3	382.207155	1143.59963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.965	1	61.71	61.21	62.21	-0.25457								0	0	0	0.76995	1	23390	23390		1.0715	0	1				28144	6470	17915	18008	27025	27025					0.03357843243838943
RRDPPRRP	8	Unmodified	_RRDPPRRP_					0	0	0		ENST00000606372.5_1_1:2263981-2323005:-|nuORF;MORN1|p.E226Gfs*45|1|0.04|ENSG00000116151|chr1:2372548-2372549|TT/-|frameshift_variant;nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	MSMS	HCT116MG_D190212_S1	1	525.30615234375	2	525.307398	1048.60024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.349	1	47.349	46.849	47.849	0								0	0	0	0.8837	1	17988	17988		4.756	0	1				28145	9111	17916	18009	27026	27026					0.07788727474235202
RRDWRAYH	8	Unmodified	_RRDWRAYH_					0	0	0			REV__ENSG00000177453|ENST00000326035|NIM1K	REV__ENSG00000177453|ENST00000326035|NIM1K	MULTI-MSMS	HCT116MG_D190212_S2	2	580.2971801757812	2	580.29703	1158.57951	0.37715	0.00021886	0.90759	0.00052667	1.2847	0.00074553	580.2975958821619	26.721	0.3128	26.369	26.137	26.449	-0.35279					8	5	2	0	0	0	0.74197	1	9662	9662		23.148	0	1	691100000	+		28146	13572	17917	18010	27027	27027					0.006561370945519229
RREEEYQSRYR	11	Unmodified	_RREEEYQSRYR_					0	0	0		nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2;RIMS2|p.M282Wfs*5|2|0.34|ENSG00000176406|chr8:103886014-103886014|A/-|frameshift_variant;RIMS2|p.M282Hfs*8|1|0.33|ENSG00000176406|chr8:103886018-103886019|-/C|frameshift_variant;RIMS2|p.G481Efs*3|1|0.44|ENSG00000176406|chr8:103915551-103915551|A/-|frameshift_variant;nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	MULTI-MSMS	HCT116MG_D190212_S1	1	786.3880004882812	2	786.387302	1570.76005	0.84377	0.00066353	-0.22951	-0.00018048	0.61427	0.00048305	786.3870226236156	22.322	0.31319	22.322	22.115	22.428	0					12	5	3	0	0	0	0.74109	1	7903	7903		6.6304	2.1015	1	4786700			28147	5418	17918	18011	27028	27028					-0.0024985382992781524
RREEEYQSRYR	11	Unmodified	_RREEEYQSRYR_					0	0	0		nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2;RIMS2|p.M282Wfs*5|2|0.34|ENSG00000176406|chr8:103886014-103886014|A/-|frameshift_variant;RIMS2|p.M282Hfs*8|1|0.33|ENSG00000176406|chr8:103886018-103886019|-/C|frameshift_variant;RIMS2|p.G481Efs*3|1|0.44|ENSG00000176406|chr8:103915551-103915551|A/-|frameshift_variant;nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	MULTI-MSMS	HCT116MG_D190212_S2	2	786.3864135742188	2	786.387302	1570.76005	0.94054	0.00073963	-0.46229	-0.00036354	0.47825	0.00037609	786.3867643357803	22.731	0.36358	22.346	22.154	22.518	-0.3852					17	6	4	0	0	0	0.74191	1	8074	8074		3.8763	0.88109	1	32367000			28148	5418	17918	18011	27029	27029					-0.0024985382992781524
RREEEYQSRYR	11	Unmodified	_RREEEYQSRYR_					0	0	0		nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2;RIMS2|p.M282Wfs*5|2|0.34|ENSG00000176406|chr8:103886014-103886014|A/-|frameshift_variant;RIMS2|p.M282Hfs*8|1|0.33|ENSG00000176406|chr8:103886018-103886019|-/C|frameshift_variant;RIMS2|p.G481Efs*3|1|0.44|ENSG00000176406|chr8:103915551-103915551|A/-|frameshift_variant;nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	MULTI-MSMS	HCT116MG_D190212_S3	3	786.3880004882812	2	786.387302	1570.76005	0.6479	0.0005095	-0.06348	-4.992E-05	0.58442	0.00045958	786.3872277599371	22.377	0.62514	22.378	22.094	22.719	0.00074577					34	11	4	0	0	0	0.74109	1	7808	7808		6.6304	2.1015	1	37510000			28149	5418	17918	18011	27030	27030					-0.0024985382992781524
RREEEYQSRYR	11	Unmodified	_RREEEYQSRYR_					0	0	0		nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2;RIMS2|p.M282Wfs*5|2|0.34|ENSG00000176406|chr8:103886014-103886014|A/-|frameshift_variant;RIMS2|p.M282Hfs*8|1|0.33|ENSG00000176406|chr8:103886018-103886019|-/C|frameshift_variant;RIMS2|p.G481Efs*3|1|0.44|ENSG00000176406|chr8:103915551-103915551|A/-|frameshift_variant;nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	MULTI-MSMS	HCT116MG_D190212_S4	4	786.36181640625	2	786.387302	1570.76005	0.80727	0.00063482	-0.28165	-0.00022148	0.52562	0.00041334	786.3870212322463	22.607	0.62484	22.369	22.082	22.706	-0.23758					36	11	5	0	0	0	0.74109	2	7824	7824;7835		6.6304	2.1015	1	33699000			28150	5418	17918	18011	27031;27032	27031					-0.0024985382992781524
RREEEYQSRYR	11	Unmodified	_RREEEYQSRYR_					0	0	0		nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2;RIMS2|p.M282Wfs*5|2|0.34|ENSG00000176406|chr8:103886014-103886014|A/-|frameshift_variant;RIMS2|p.M282Hfs*8|1|0.33|ENSG00000176406|chr8:103886018-103886019|-/C|frameshift_variant;RIMS2|p.G481Efs*3|1|0.44|ENSG00000176406|chr8:103915551-103915551|A/-|frameshift_variant;nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	786.387302	1570.76005	0.84377	0.00066353	-0.22951	-0.00018048	0.61427	0.00048305	786.3870226236156	22.322	0.31319	22.322	22.115	22.428	0	-0.031855	-7.8225E-05	NaN	6.6304	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4786700			28151	5418	17918	18011							-0.0024985382992781524
RREEEYQSRYR	11	Unmodified	_RREEEYQSRYR_					0	0	0		nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2;RIMS2|p.M282Wfs*5|2|0.34|ENSG00000176406|chr8:103886014-103886014|A/-|frameshift_variant;RIMS2|p.M282Hfs*8|1|0.33|ENSG00000176406|chr8:103886018-103886019|-/C|frameshift_variant;RIMS2|p.G481Efs*3|1|0.44|ENSG00000176406|chr8:103915551-103915551|A/-|frameshift_variant;nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	786.387302	1570.76005	0.6479	0.0005095	-0.06348	-4.992E-05	0.58442	0.00045958	786.3872277599371	22.377	0.62514	22.378	22.094	22.719	0.00074577	0.024231	0.0001829	NaN	6.6304	34	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37510000			28152	5418	17918	18011							-0.0024985382992781524
RREEEYQSRYR	11	Unmodified	_RREEEYQSRYR_					0	0	0		nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2;RIMS2|p.M282Wfs*5|2|0.34|ENSG00000176406|chr8:103886014-103886014|A/-|frameshift_variant;RIMS2|p.M282Hfs*8|1|0.33|ENSG00000176406|chr8:103886018-103886019|-/C|frameshift_variant;RIMS2|p.G481Efs*3|1|0.44|ENSG00000176406|chr8:103915551-103915551|A/-|frameshift_variant;nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	786.387302	1570.76005	0.80727	0.00063482	-0.28165	-0.00022148	0.52562	0.00041334	786.3870212322463	22.607	0.62484	22.369	22.082	22.706	-0.23758	0.015645	-0.00016023	NaN	6.6304	36	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33699000			28153	5418	17918	18011							-0.0024985382992781524
RREGTQIK	8	Unmodified	_RREGTQIK_					0	0	0			REV__ENSG00000186230|ENST00000334181|ZNF749	REV__ENSG00000186230|ENST00000334181|ZNF749	MULTI-MSMS	HCT116MG_D190212_S1	1	494.2883605957031	2	494.28834	986.562127	0.13519	6.6822E-05	0.44749	0.00022119	0.58268	0.00028801	494.2885350931204	50.6	0.72174	50.6	50.008	50.73	0					21	13	3	0	0	0	0.83066	1	19320	19320		7.9102	0	1	51201000	+		28154	13880	17919	18012	27033	27033					0.06830796768917935
RREKKLYF	8	Unmodified	_RREKKLYF_					0	0	0		nc|ENSG00000155893|Q8TE99-2|PXYLP1;ENSG00000155893|ENST00000286353|PXYLP1	nc|ENSG00000155893|Q8TE99-2|PXYLP1	nc|ENSG00000155893|Q8TE99-2|PXYLP1	MSMS	HCT116MG_D190212_S1	1	570.33984375	2	570.337833	1138.66111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.483	1	57.483	56.983	57.983	0								0	0	0	0.8837	1	22121	22121		4.756	0.42677	1				28155	4267	17920	18013	27034	27034					0.09732819733812903
RRELQLPQRKP	11	Unmodified	_RRELQLPQRKP_					0	0	0			REV__ZSWIM8|p.P689Lfs*46|1|0.15|ENSG00000214655|chr10:73792600-73792600|C/-|frameshift_variant	REV__ZSWIM8|p.P689Lfs*46|1|0.15|ENSG00000214655|chr10:73792600-73792600|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	710.92919921875	2	710.928409	1419.84226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.578	1	30.293	29.793	30.793	-0.28453								0	0	0	0.95196	1	11248	11248		5.2969	2.5617	1		+		28156	18096	17921	18014	27035	27035					0.14913713039686627
RRERRFRRYL	10	Unmodified	_RRERRFRRYL_					0	0	0		nc|ENSG00000204498|Q9UBC1-2|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1;ENSG00000204498|ENST00000376148|NFKBIL1	nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	MSMS	HCT116MG_D190212_S3	3	754.4435424804688	2	754.445092	1506.87563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.497	1	39.195	38.695	39.695	-0.30137								0	0	0	0.96937	1	14663	14663		0.40072	0.050084	1				28157	6338	17922	18015	27036	27036					0.14246759602269776
RRETYRAE	8	Unmodified	_RRETYRAE_					0	0	0			REV__TAPT1|p.K90R|1|0.26|ENSG00000169762|chr4:16213829-16213829|T/C|missense_variant	REV__TAPT1|p.K90R|1|0.26|ENSG00000169762|chr4:16213829-16213829|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	540.7820434570312	2	540.780879	1079.5472	0.43273	0.00023401	1.0708	0.00057908	1.5036	0.0008131	540.7816338156787	47.638	0.34821	47.638	47.441	47.789	0					10	6	2	0	0	0	0.83066	1	18112	18112		7.9102	3.1541	1	17396000	+		28158	17616	17923	18016	27037	27037					0.010613049008952657
RRFDHGREL	9	Unmodified	_RRFDHGREL_					0	0	0		ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	MULTI-MSMS	HCT116MG_D190212_S2	2	396.8511657714844	3	395.879372	1184.61629	0.027715	1.0972E-05	-0.13256	-5.2477E-05	-0.10484	-4.1505E-05	395.8793272346709	19.331	0.20864	18.962	18.836	19.044	-0.3695					7	3	3	0	0	0	0.68668	1	6668	6668		6.1918	1.4759	1	10786000			28159	5575	17924	18017	27038	27038					0.03136388920461286
RRFFKAKKL	9	Unmodified	_RRFFKAKKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S2	2	398.5924987792969	3	398.592504	1192.75568	-0.062877	-2.5062E-05	-0.29584	-0.00011792	-0.35872	-0.00014298	398.5924429854255	20.429	0.21267	20.05	19.917	20.13	-0.37949					9	3	3	0	0	0	0.13316	1	7146	7146		51.63	18.732	1	14016000			28160	5125	17925	18018	27039	27039					0.16701378275774914
RRFFKAKKL	9	Unmodified	_RRFFKAKKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	HCT116MG_D190212_S2	2	597.3851928710938	2	597.385117	1192.75568	0.61286	0.00036611	0.15515	9.2682E-05	0.76801	0.0004588	597.3850556307025	20.403	0.26498	20.024	19.865	20.13	-0.37949					9	4	3	0	0	0	0.47413	1	7154	7154		25.399	1.6095	1	6312200			28161	5125	17925	18018	27040	27040					0.16701378275774914
RRFFPYYVY	9	Unmodified	_RRFFPYYVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MSMS	HCT116MG_D190212_S1	1	655.8374633789062	2	655.837665	1309.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.734	1	48.734	48.234	49.234	0								0	0	0	0.026974	1	18552	18552		85.357	61.567	1				28162	855	17926	18019	27041	27041					0.018334000139475393
RRFFPYYVY	9	Unmodified	_RRFFPYYVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S2	2	655.8380737304688	2	655.837665	1309.66078	0.64099	0.00042038	-0.062846	-4.1217E-05	0.57814	0.00037917	655.8375423412186	48.811	0.45556	48.668	48.439	48.894	-0.1437					22	8	3	0	0	0	0.0043177	1	18640	18640		146.01	121.99	1	383870000			28163	855	17926	18019	27042	27042					0.018334000139475393
RRFFPYYVY	9	Unmodified	_RRFFPYYVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S2	2	437.5611572265625	3	437.560869	1309.66078	0.16143	7.0634E-05	-0.2945	-0.00012886	-0.13307	-5.8227E-05	437.89507194647007	48.811	0.45593	48.668	48.388	48.844	-0.1437					13	8	2	0	0	0	0.050578	1	18647	18647		57.722	46.823	1	111970000			28164	855	17926	18019	27043	27043					0.018334000139475393
RRFFPYYVY	9	Unmodified	_RRFFPYYVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S3	3	656.3751831054688	2	655.837665	1309.66078	0.83031	0.00054455	-0.33414	-0.00021914	0.49617	0.00032541	655.8374695551411	49.061	0.4233	48.745	48.499	48.922	-0.31596					18	7	3	0	0	0	0.0043177	2	18441	18441;18447		146.01	123.27	1	14902000			28165	855	17926	18019	27044;27045	27044					0.018334000139475393
RRFFPYYVY	9	Unmodified	_RRFFPYYVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S3	3	437.56072998046875	3	437.560869	1309.66078	0.34403	0.00015054	-0.25131	-0.00010996	0.092722	4.0572E-05	437.89511563524707	49.024	0.31748	48.708	48.552	48.87	-0.31596					13	5	3	0	0	0	0.13706	1	18468	18468		38.176	27.277	1	5886200			28166	855	17926	18019	27046	27046					0.018334000139475393
RRFFPYYVY	9	Unmodified	_RRFFPYYVY_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	HCT116MG_D190212_S4	4	656.51806640625	2	655.837665	1309.66078	0.42147	0.00027642	0.56753	0.0003722	0.989	0.00064862	655.8381211680945	49.154	0.3062	48.789	48.612	48.918	-0.365					7	5	2	0	0	0	0.065014	2	18233	18233;18252		67.344	41.945	1	4205700			28167	855	17926	18019	27047;27048	27047					0.018334000139475393
RRFKWAIEL	9	Unmodified	_RRFKWAIEL_					0	0	0		nc|ENSG00000128463|Q5J8M3-3|EMC4;ENST00000557941.1_1_15:34517315-34518058:+|nuORF;nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	MULTI-MSMS	HCT116MG_D190212_S1	1	406.9078063964844	3	406.90838	1217.70331	-0.19954	-8.1193E-05	-0.078689	-3.2019E-05	-0.27822	-0.00011321	406.9079889851761	47.925	0.30622	47.925	47.742	48.048	0					11	5	3	0	0	0	0.084109	1	18224	18224		47.594	19.413	1	26203000			28168	2994	17927	18020	27049	27049					0.10316795142171031
RRFKWAIEL	9	Unmodified	_RRFKWAIEL_					0	0	0		nc|ENSG00000128463|Q5J8M3-3|EMC4;ENST00000557941.1_1_15:34517315-34518058:+|nuORF;nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	MULTI-MSMS	HCT116MG_D190212_S2	2	406.9087219238281	3	406.90838	1217.70331	0.15296	6.2243E-05	-0.33064	-0.00013454	-0.17768	-7.2299E-05	406.90821891496205	47.999	0.40824	47.867	47.636	48.044	-0.13281					13	7	3	0	0	0	0.027492	1	18311	18311		70.332	34.336	1	170520000			28169	2994	17927	18020	27050	27050					0.10316795142171031
RRFKWAIEL	9	Unmodified	_RRFKWAIEL_					0	0	0		nc|ENSG00000128463|Q5J8M3-3|EMC4;ENST00000557941.1_1_15:34517315-34518058:+|nuORF;nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	MULTI-MSMS	HCT116MG_D190212_S2	2	609.8587036132812	2	609.858932	1217.70331	0.84931	0.00051796	-1.1985	-0.00073094	-0.34922	-0.00021298	609.8583148480583	47.999	0.30619	47.867	47.687	47.993	-0.13281					9	5	2	0	0	0	0.071914	1	18326	18326		63.961	25.987	1	118220000			28170	2994	17927	18020	27051	27051					0.10316795142171031
RRFKWAIEL	9	Unmodified	_RRFKWAIEL_					0	0	0		nc|ENSG00000128463|Q5J8M3-3|EMC4;ENST00000557941.1_1_15:34517315-34518058:+|nuORF;nc|ENSG00000128463|Q5J8M3-2|EMC4;ENSG00000128463|ENST00000267750|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	nc|ENSG00000128463|Q5J8M3-3|EMC4	MULTI-SECPEP	HCT116MG_D190212_S3	3	406.9084777832031	3	406.90838	1217.70331	0.027914	1.1358E-05	0.09159	3.7269E-05	0.1195	4.8627E-05	406.9084567396613	48.169	0.20863	47.853	47.775	47.984	-0.31596					5	3	2	0	0	0	0.2338	1	18147	18147		18.373	0	1	3672900			28171	2994	17927	18020	27052	27052					0.10316795142171031
RRFMQTFVL	9	Unmodified	_RRFMQTFVL_					0	0	0		nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENSG00000145907|ENST00000356245|G3BP1;G3BP1|p.A115V|1|0.41|ENSG00000145907|chr5:151791055-151791055|C/T|missense_variant	nc|ENSG00000145907|Q13283-2|G3BP1	nc|ENSG00000145907|Q13283-2|G3BP1	MULTI-MSMS	HCT116MG_D190212_S1	1	599.7914428710938	2	599.331693	1196.64883	0.44039	0.00026394	-0.12366	-7.4113E-05	0.31673	0.00018983	599.3315886032785	49.649	0.15546	49.649	49.543	49.699	0					6	2	3	0	0	0	0.23138	2	18927	18927;18943		37.974	18.253	1	18309000			28172	3929	17928	18021	27053;27054	27053					0.05837459999133898
RRFMQTFVL	9	Unmodified	_RRFMQTFVL_					0	0	0		nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENSG00000145907|ENST00000356245|G3BP1;G3BP1|p.A115V|1|0.41|ENSG00000145907|chr5:151791055-151791055|C/T|missense_variant	nc|ENSG00000145907|Q13283-2|G3BP1	nc|ENSG00000145907|Q13283-2|G3BP1	MULTI-MSMS	HCT116MG_D190212_S2	2	599.331298828125	2	599.331693	1196.64883	0.325	0.00019478	-0.71307	-0.00042737	-0.38807	-0.00023258	599.3311793991674	49.774	0.30581	49.61	49.432	49.737	-0.16369					13	5	3	0	0	0	0.11023	1	19063	19063		56.177	21.775	1	141450000			28173	3929	17928	18021	27055	27055					0.05837459999133898
RRFRQWVDITF	11	Unmodified	_RRFRQWVDITF_					0	0	0			REV__ENSG00000117834|ENST00000438567|SLC5A9	REV__ENSG00000117834|ENST00000438567|SLC5A9	MSMS	HCT116MG_D190212_S3	3	508.6121826171875	3	508.612515	1522.81572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.504	1	44.196	43.696	44.696	-0.30759								0	0	0	0.95307	1	16639	16639		4.7159	0.30977	1		+		28174	11625	17929	18022	27056	27056					0.07522024148352102
RRFVVLLIF	9	Unmodified	_RRFVVLLIF_					0	0	0		FLVCR1|p.V242Afs*26|1|0.06|ENSG00000162769|chr1:212859176-212859177|-/CACT|frameshift_variant;FLVCR1|p.N331Tfs*8|1|0.34|ENSG00000162769|chr1:212872782-212872782|A/-|frameshift_variant;ENSG00000162769|ENST00000366971|FLVCR1	FLVCR1|p.V242Afs*26|1|0.06|ENSG00000162769|chr1:212859176-212859177|-/CACT|frameshift_variant	FLVCR1|p.V242Afs*26|1|0.06|ENSG00000162769|chr1:212859176-212859177|-/CACT|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	388.254150390625	3	388.253488	1161.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.791	1	47.475	46.975	47.975	-0.31525								0	0	0	0.77018	1	17957	17957		0.26902	0	1				28175	4554	17930	18023	27057	27057					0.16423457669998243
RRFVVLLIF	9	Unmodified	_RRFVVLLIF_					0	0	0		FLVCR1|p.V242Afs*26|1|0.06|ENSG00000162769|chr1:212859176-212859177|-/CACT|frameshift_variant;FLVCR1|p.N331Tfs*8|1|0.34|ENSG00000162769|chr1:212872782-212872782|A/-|frameshift_variant;ENSG00000162769|ENST00000366971|FLVCR1	FLVCR1|p.V242Afs*26|1|0.06|ENSG00000162769|chr1:212859176-212859177|-/CACT|frameshift_variant	FLVCR1|p.V242Afs*26|1|0.06|ENSG00000162769|chr1:212859176-212859177|-/CACT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	388.2536926269531	3	388.253488	1161.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.924	1	47.555	47.055	48.055	-0.36907								0	0	0	0.77018	1	17731	17731		0.26902	0	1				28176	4554	17930	18023	27058	27058					0.16423457669998243
RRFWVKQLSLV	11	Unmodified	_RRFWVKQLSLV_					0	0	0		ENST00000264434.6_1_2:70409899-70410019:-|nuORF	ENST00000264434.6_1_2:70409899-70410019:-|nuORF	ENST00000264434.6_1_2:70409899-70410019:-|nuORF	MSMS	HCT116MG_D190212_S4	4	477.9595031738281	3	477.957623	1430.85104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.916	1	52.576	52.076	53.076	-0.34023								0	0	0	0.95954	1	19741	19741		1.3296	0	1				28177	6891	17931	18024	27059	27059					0.1528468667618199
RRGAGSRS	8	Unmodified	_RRGAGSRS_					0	0	0			REV__ENST00000298532.2_1_9:139282988-139286542:-|nuORF	REV__ENST00000298532.2_1_9:139282988-139286542:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	423.73687744140625	2	423.736274	845.457996	0.32221	0.00013653	0.85606	0.00036274	1.1783	0.00049927	423.73659876106234	47.089	0.46688	46.718	46.381	46.848	-0.37038					11	8	2	0	0	0	0.8672	1	17412	17412		2.3027	0	1	5653800	+		28178	14769	17932	18025	27060	27060					0.02908514732052936
RRGALLKV	8	Unmodified	_RRGALLKV_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50;ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-SECPEP	HCT116MG_D190212_S1	1	456.31689453125	2	456.808711	911.602869	0.0070234	3.2084E-06	0.2595	0.00011854	0.26652	0.00012175	456.8086498057685	58.387	0.40504	58.387	58.261	58.666	0					17	7	3	0	0	0	0.33585	1	22573	22573		0.69038	0	1	53476000			28179	1693	17933	18026	27061	27061					0.1435318287917653
RRGATSSR	8	Unmodified	_RRGATSSR_					0	0	0		NRAP|p.Q1354R|1|0.16|ENSG00000197893|chr10:113604775-113604775|T/C|missense_variant	NRAP|p.Q1354R|1|0.16|ENSG00000197893|chr10:113604775-113604775|T/C|missense_variant	NRAP|p.Q1354R|1|0.16|ENSG00000197893|chr10:113604775-113604775|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	445.7498779296875	2	445.749382	889.484211	0.066753	2.9755E-05	1.5521	0.00069186	1.6189	0.00072161	445.75000129681115	47.243	0.3847	47.243	47.01	47.395	0					12	7	2	0	0	0	0.83066	1	17953	17953		7.9102	0	1	61049000			28180	9704	17934	18027	27062	27062					0.03504783903531461
RRGATSSR	8	Unmodified	_RRGATSSR_					0	0	0		NRAP|p.Q1354R|1|0.16|ENSG00000197893|chr10:113604775-113604775|T/C|missense_variant	NRAP|p.Q1354R|1|0.16|ENSG00000197893|chr10:113604775-113604775|T/C|missense_variant	NRAP|p.Q1354R|1|0.16|ENSG00000197893|chr10:113604775-113604775|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	445.749382	889.484211	0.50568	0.0002254	1.5466	0.00068941	2.0523	0.00091482	445.74994870172577	47.73	0.31029	47.597	47.428	47.738	-0.13281	0.17714	-2.0449E-06	NaN	7.9102	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10594000			28181	9704	17934	18027							0.03504783903531461
RRGDFIHVM	9	Oxidation (M)	_RRGDFIHVM(Oxidation (M))_		RRGDFIHVM(1)		RRGDFIHVM(50)	0	0	1		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S1	1	383.5365905761719	3	382.866075	1145.5764	-0.14167	-5.4241E-05	2.1953	0.00084049	2.0536	0.00078625	382.8660659040505	27.335	0.4155	27.335	27.125	27.541	0					21	7	5	0	0	0	0.14376	2	9892	9892;9905		49.527	36.009	1	22571000			28182	5477	17935	18028	27063;27064	27063		119			0.009431259255279656
RRGDFIHVM	9	Oxidation (M)	_RRGDFIHVM(Oxidation (M))_		RRGDFIHVM(1)		RRGDFIHVM(83)	0	0	1		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S1	1	573.795654296875	2	573.795475	1145.5764	0.36724	0.00021072	1.1919	0.00068393	1.5592	0.00089466	573.7955324840127	27.346	0.31189	27.346	27.178	27.49	0					12	5	3	0	0	0	0.034046	1	9923	9923		82.529	52.689	1	8445900			28183	5477	17935	18028	27065	27065		119			0.009431259255279656
RRGDFIHVM	9	Oxidation (M)	_RRGDFIHVM(Oxidation (M))_		RRGDFIHVM(1)		RRGDFIHVM(57)	0	0	1		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S2	2	382.865966796875	3	382.866075	1145.5764	-0.085981	-3.2919E-05	1.9985	0.00076514	1.9125	0.00073223	382.86604209761634	27.832	0.56744	27.49	27.139	27.706	-0.34201					32	10	5	0	0	0	0.10482	2	10114	10105;10114		57.249	37.623	1	98949000			28184	5477	17935	18028	27066;27067	27067		119			0.009431259255279656
RRGDFIHVM	9	Oxidation (M)	_RRGDFIHVM(Oxidation (M))_		RRGDFIHVM(1)		RRGDFIHVM(42)	0	0	1		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S2	2	573.7955322265625	2	573.795475	1145.5764	0.35979	0.00020644	1.3594	0.00078001	1.7192	0.00098645	573.7954471790166	27.779	0.46344	27.437	27.243	27.706	-0.34201					21	8	3	0	0	0	0.19461	1	10123	10123		41.84	27.001	1	84620000			28185	5477	17935	18028	27068	27068		119			0.009431259255279656
RRGDFIHVM	9	Oxidation (M)	_RRGDFIHVM(Oxidation (M))_		RRGDFIHVM(1)		RRGDFIHVM(48)	0	0	1		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S3	3	382.8659362792969	3	382.866075	1145.5764	0.105	4.0201E-05	-0.010002	-3.8293E-06	0.094999	3.6372E-05	382.86598135960554	27.637	0.31187	27.448	27.257	27.569	-0.18847					11	5	3	0	0	0	0.1535	1	9979	9979		47.594	37.279	1	4481600			28186	5477	17935	18028	27069	27069		119			0.009431259255279656
RRGDFIHVM	9	Unmodified	_RRGDFIHVM_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S1	1	377.5344543457031	3	377.534437	1129.58148	-0.0068553	-2.5881E-06	-0.18297	-6.9077E-05	-0.18982	-7.1665E-05	377.53433846712386	35.293	0.3632	35.293	35.163	35.526	0					15	6	3	0	0	0	0.035349	1	13126	13126		74.2	46.976	1	167410000			28187	5477	17935	18029	27070	27070					0.02187429788159534
RRGDFIHVM	9	Unmodified	_RRGDFIHVM_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S1	1	565.7984619140625	2	565.798017	1129.58148	0.47756	0.0002702	-0.11342	-6.4171E-05	0.36414	0.00020603	565.7979350731198	35.293	0.36155	35.293	35.114	35.475	0					16	6	4	0	0	0	0.012596	1	13128	13128		106.94	77.859	1	72097000			28188	5477	17935	18029	27071	27071					0.02187429788159534
RRGDFIHVM	9	Unmodified	_RRGDFIHVM_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S2	2	377.5341491699219	3	377.534437	1129.58148	-0.24701	-9.3253E-05	-0.40036	-0.00015115	-0.64736	-0.0002444	377.5342486225946	35.342	0.55689	35.2	34.984	35.541	-0.14245					27	10	4	0	0	0	0.016701	2	13168	13168;13250		100.09	79.51	1	1165200000			28189	5477	17935	18029	27072;27073	27072					0.02187429788159534
RRGDFIHVM	9	Unmodified	_RRGDFIHVM_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S2	2	565.7980346679688	2	565.798017	1129.58148	0.36786	0.00020813	-0.48376	-0.00027371	-0.1159	-6.5576E-05	565.7976630415245	35.352	0.40121	35.209	35.036	35.437	-0.14245					25	7	4	0	0	0	0.01405	2	13169	13169;13236		103.35	82.9	1	823420000			28190	5477	17935	18029	27074;27075	27074					0.02187429788159534
RRGDFIHVM	9	Unmodified	_RRGDFIHVM_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S3	3	377.5344543457031	3	377.534437	1129.58148	0.40073	0.00015129	0.037146	1.4024E-05	0.43788	0.00016531	377.53442352596807	35.591	0.18981	35.292	35.199	35.389	-0.29922					25	15	2	0	0	0	0.063511	1	13109	13109		53.404	47.212	1	49847000			28191	5477	17935	18029	27076	27076					0.02187429788159534
RRGDFIHVM	9	Unmodified	_RRGDFIHVM_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MULTI-MSMS	HCT116MG_D190212_S3	3	565.7988891601562	2	565.798017	1129.58148	0.90091	0.00050973	-0.054298	-3.0722E-05	0.84661	0.00047901	565.7980688369348	35.582	0.16225	35.283	35.207	35.369	-0.29922					20	13	2	0	0	0	0.0080847	1	13119	13119		118.07	97.615	1	35929000			28192	5477	17935	18029	27077	27077					0.02187429788159534
RRGDFIHVM	9	Unmodified	_RRGDFIHVM_					0	0	0		ENSG00000177885|ENST00000316804|GRB2;nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF	ENSG00000177885|ENST00000316804|GRB2	ENSG00000177885|ENST00000316804|GRB2	MSMS	HCT116MG_D190212_S4	4	377.5342712402344	3	377.534437	1129.58148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.752	1	35.366	34.866	35.866	-0.38606								0	0	0	0.38321	1	13061	13061		26.021	17.865	1				28193	5477	17935	18029	27078	27078					0.02187429788159534
RRGEYVLTF	9	Unmodified	_RRGEYVLTF_					0	0	0		SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant;ENSG00000111252|ENST00000341259|SH2B3;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1	SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant	SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	570.8118896484375	2	570.811648	1139.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.178	1	45.085	44.585	45.585	-0.092472								0	0	0	0.006	1	17173	17173		114.2	46.121	1				28194	2280	17936	18030	27079	27079					0.0445223660017291
RRGEYVLTF	9	Unmodified	_RRGEYVLTF_					0	0	0		SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant;ENSG00000111252|ENST00000341259|SH2B3;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1	SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant	SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	570.8118896484375	2	570.811648	1139.60874	0.51196	0.00029223	-0.33738	-0.00019258	0.17458	9.965E-05	570.8114699072358	45.485	0.36513	45.174	45.044	45.409	-0.31094					9	6	2	0	0	0	0.0201	1	17037	17037		96.367	37.688	1	11615000			28195	2280	17936	18030	27080	27080					0.0445223660017291
RRGEYVLTF	9	Unmodified	_RRGEYVLTF_					0	0	0		SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant;ENSG00000111252|ENST00000341259|SH2B3;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1	SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant	SH2B3|p.E523Sfs*25|1|0.42|ENSG00000111252|chr12:111448135-111448135|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	571.3137817382812	2	570.811648	1139.60874	0.65067	0.00037141	-0.53286	-0.00030416	0.11781	6.7248E-05	570.8114152911143	45.65	0.35783	45.277	45.091	45.449	-0.37266					8	6	2	0	0	0	0.12205	1	16840	16840		53.833	11.738	1	3706100			28196	2280	17936	18030	27081	27081					0.0445223660017291
RRGGAALAP	9	Unmodified	_RRGGAALAP_					0	0	0		ENST00000461395.5_1_2:220378960-220396865:+|nuORF	ENST00000461395.5_1_2:220378960-220396865:+|nuORF	ENST00000461395.5_1_2:220378960-220396865:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	434.75933837890625	2	434.759218	867.503883	-0.11937	-5.1895E-05	0.15999	6.9555E-05	0.04062	1.766E-05	434.759138907753	51.217	0.61931	51.217	50.73	51.349	0					17	11	3	0	0	0	0.70732	1	19570	19570		4.756	0	1	33442000			28197	8055	17937	18031	27082	27082					0.06483159914273529
RRGGERKRRRP	11	Unmodified	_RRGGERKRRRP_					0	0	0		ENST00000298966.2_11:93232511-93276567:-|nuORF	ENST00000298966.2_11:93232511-93276567:-|nuORF	ENST00000298966.2_11:93232511-93276567:-|nuORF	MSMS	HCT116MG_D190212_S2	2	712.43359375	2	712.432516	1422.85048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.362	1	42.292	41.792	42.792	-0.069752								0	0	0	0.95636	1	16033	16033		2.9952	0	1				28198	6989	17938	18032	27083	27083					0.1559670479966826
RRGHLLLLL	9	Unmodified	_RRGHLLLLL_					0	0	0		SOCS6|p.N66Kfs*49|2|0.16|ENSG00000170677|chr18:70324859-70324860|-/A|frameshift_variant	SOCS6|p.N66Kfs*49|2|0.16|ENSG00000170677|chr18:70324859-70324860|-/A|frameshift_variant	SOCS6|p.N66Kfs*49|2|0.16|ENSG00000170677|chr18:70324859-70324860|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	545.8643798828125	2	545.864018	1089.71348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.856	1	12.856	12.356	13.356	0								0	0	0	0.77025	1	4148	4148		0	0	1				28199	18183	17939	18033	27084	27084					0.17221402867448887
RRGHLLLLL	9	Unmodified	_RRGHLLLLL_					0	0	0		SOCS6|p.N66Kfs*49|2|0.16|ENSG00000170677|chr18:70324859-70324860|-/A|frameshift_variant	SOCS6|p.N66Kfs*49|2|0.16|ENSG00000170677|chr18:70324859-70324860|-/A|frameshift_variant	SOCS6|p.N66Kfs*49|2|0.16|ENSG00000170677|chr18:70324859-70324860|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	545.8643798828125	2	545.864018	1089.71348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.64	1	11.358	10.858	11.858	-0.28186								0	0	0	0.77025	1	3763	3763		0	0	1				28200	18183	17939	18033	27085	27085					0.17221402867448887
RRGHRQLRWRP	11	Unmodified	_RRGHRQLRWRP_					0	0	0			REV__ENST00000398204.8_1_7:87563558-87563747:+|nuORF	REV__ENST00000398204.8_1_7:87563558-87563747:+|nuORF	MSMS	HCT116MG_D190212_S1	1	506.6323547363281	3	506.631014	1516.87121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.699	1	49.699	49.199	50.199	0								0	0	0	0.95954	1	18944	18944		1.3296	1.2348	1		+		28201	15373	17940	18034	27086	27086					0.13345295179328787
RRGIFHIIL	9	Unmodified	_RRGIFHIIL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MSMS	HCT116MG_D190212_S2	2	562.857666015625	2	562.856193	1123.69783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.094	1	46.972	46.472	47.472	-0.12175								0	0	0	0.34992	1	17956	17956		48.346	22.947	1				28202	3750	17941	18035	27087	27087					0.1409311635038648
RRGKNKERE	9	Unmodified	_RRGKNKERE_					0	0	0		THSD7A|p.S727Kfs*30|1|0.05|ENSG00000005108|chr7:11474407-11474408|-/TTTGTTT|frameshift_variant;THSD7A|p.N1009Mfs*47|1|0.08|ENSG00000005108|chr7:11446099-11446099|T/-|frameshift_variant;THSD7A|p.C1369Lfs*5|1|0.13|ENSG00000005108|chr7:11406431-11406432|-/A|frameshift_variant;THSD7A|p.R1591Kfs*62|1|0.26|ENSG00000005108|chr7:11379101-11379102|-/C|frameshift_variant;ENSG00000005108|ENST00000423059|THSD7A	THSD7A|p.S727Kfs*30|1|0.05|ENSG00000005108|chr7:11474407-11474408|-/TTTGTTT|frameshift_variant	THSD7A|p.S727Kfs*30|1|0.05|ENSG00000005108|chr7:11474407-11474408|-/TTTGTTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	586.83349609375	2	586.833977	1171.6534	0.50119	0.00029412	0.31785	0.00018652	0.81904	0.00048064	586.8337886911121	49.036	0.92874	49.036	48.408	49.337	0					25	17	3	0	0	0	0.67781	1	18638	18638		6.7232	6.7232	1	17816000			28203	810	17942	18036	27088	27088					0.07444060466241353
RRGPHHYEL	9	Unmodified	_RRGPHHYEL_					0	0	0		nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	MULTI-MSMS	HCT116MG_D190212_S2	2	389.2066955566406	3	388.872218	1163.59482	0.046727	1.8171E-05	-0.20247	-7.8733E-05	-0.15574	-6.0563E-05	388.87205580938763	20.955	0.31226	20.572	20.39	20.703	-0.38288					14	5	4	0	0	0	0.057285	1	7353	7353		55.503	34.922	1	91131000			28204	6421	17943	18037	27089	27089					0.019570038917663624
RRGPHHYEL	9	Unmodified	_RRGPHHYEL_					0	0	0		nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	MULTI-MSMS	HCT116MG_D190212_S2	2	582.8050537109375	2	582.804688	1163.59482	0.48409	0.00028213	-0.16929	-9.8666E-05	0.3148	0.00018347	582.8044881012552	20.955	0.36415	20.572	20.443	20.807	-0.38288					12	6	3	0	0	0	0.012496	1	7355	7355		107.19	69.213	1	70279000			28205	6421	17943	18037	27090	27090					0.019570038917663624
RRGPHHYEL	9	Unmodified	_RRGPHHYEL_					0	0	0		nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	MULTI-MSMS	HCT116MG_D190212_S3	3	388.8721923828125	3	388.872218	1163.59482	-0.097828	-3.8043E-05	0.0020047	7.7957E-07	-0.095824	-3.7263E-05	388.87217146427224	19.216	0.25989	19.281	19.131	19.391	0.065506					7	4	2	0	0	0	0.2853	1	6595	6595		23.79	3.2088	1	2757100			28206	6421	17943	18037	27091	27091					0.019570038917663624
RRGPLTWYL	9	Unmodified	_RRGPLTWYL_					0	0	0		ENST00000488506.5_1_9:130570554-130575491:+|nuORF;ENST00000467826.5_1_9:130570554-130576503:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS	ENST00000488506.5_1_9:130570554-130575491:+|nuORF	ENST00000488506.5_1_9:130570554-130575491:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	581.3302612304688	2	581.330008	1160.64546	0.49988	0.00029059	-0.069498	-4.0401E-05	0.43038	0.00025019	581.3300502784205	51.647	0.30809	51.464	51.27	51.578	-0.18369					13	5	3	0	0	0	0.055677	1	19824	19824		71.922	45.654	1	34727000			28207	3439	17944	18038	27092	27092					0.07156533216766547
RRGPLVKY	8	Unmodified	_RRGPLVKY_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	494.8064880371094	2	494.806168	987.597784	0.34858	0.00017248	0.063494	3.1417E-05	0.41208	0.0002039	494.80607621342614	22.607	0.31266	22.607	22.428	22.741	0					9	5	3	0	0	0	0.31873	1	8021	8021		57.471	19.32	1	11447000			28208	2177	17945	18039	27093	27093					0.10348879016555657
RRGPLVKY	8	Unmodified	_RRGPLVKY_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	494.8062438964844	2	494.806168	987.597784	0.26861	0.00013291	0.15006	7.4252E-05	0.41867	0.00020716	494.80617745511523	23.397	0.31079	23.011	22.882	23.193	-0.3852					11	5	3	0	0	0	0.15965	1	8337	8337		81.613	28.038	1	123820000			28209	2177	17945	18039	27094	27094					0.10348879016555657
RRGPLVKY	8	Unmodified	_RRGPLVKY_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	494.8063049316406	2	494.806168	987.597784	0.23447	0.00011601	0.064094	3.1714E-05	0.29856	0.00014773	494.8062220230451	22.297	0.26058	22.298	22.146	22.407	0.00074387					7	4	2	0	0	0	0.48901	1	7834	7834		42.095	11.87	1	3206200			28210	2177	17945	18039	27095	27095					0.10348879016555657
RRGPPRNY	8	Unmodified	_RRGPPRNY_					0	0	0		ENSG00000060138|ENST00000228251|YBX3;nc|ENSG00000060138|P16989-3|YBX3;YBX3|p.E195G|1|0.52|ENSG00000060138|chr12:10710104-10710104|T/C|missense_variant;ENSG00000065978|ENST00000321358|YBX1	ENSG00000060138|ENST00000228251|YBX3;ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S1	1	508.2801513671875	2	508.280849	1014.54715	0.39648	0.00020152	-0.49801	-0.00025313	-0.10153	-5.1606E-05	508.28046236831597	15.595	0.41651	15.595	15.38	15.796	0					13	7	2	0	0	0	0.64404	1	5184	5184		28.487	6.7402	1	3561500			28211	1164;1106	17946	18040	27096	27096					0.04045349691557476
RRGPPRNY	8	Unmodified	_RRGPPRNY_					0	0	0		ENSG00000060138|ENST00000228251|YBX3;nc|ENSG00000060138|P16989-3|YBX3;YBX3|p.E195G|1|0.52|ENSG00000060138|chr12:10710104-10710104|T/C|missense_variant;ENSG00000065978|ENST00000321358|YBX1	ENSG00000060138|ENST00000228251|YBX3;ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S2	2	508.28131103515625	2	508.280849	1014.54715	0.28245	0.00014356	-0.032601	-1.657E-05	0.24985	0.00012699	508.2807541548124	16.05	0.7834	15.715	15.376	16.159	-0.33451					39	14	4	0	0	0	0.64404	1	5300	5300		28.487	8.0332	1	30818000			28212	1164;1106	17946	18040	27097	27097					0.04045349691557476
RRGQILWF	8	Unmodified	_RRGQILWF_					0	0	0		nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000157087|Q01814-5|ATP2B2;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000058668|P23634-5|ATP2B4;ATP2B3|p.R1106Q|1|0.38|ENSG00000067842|chrX:153565078-153565078|G/A|missense_variant	nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000070961|P20020-1|ATP2B1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.311767578125	2	538.311618	1074.60868	0.475	0.0002557	-0.060578	-3.261E-05	0.41442	0.00022309	538.3115681957169	54.321	0.15355	54.131	54.048	54.201	-0.1894					6	2	3	0	0	0	0.78216	1	20937	20937		13.508	4.9146	1	31589000			28213	1101	17947	18041	27098	27098					0.07436281390823751
RRGQVGPV	8	Unmodified	_RRGQVGPV_					0	0	0		ENST00000462875.1_1_6:31609004-31609235:-|nuORF	ENST00000462875.1_1_6:31609004-31609235:-|nuORF	ENST00000462875.1_1_6:31609004-31609235:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	434.7591247558594	2	434.759218	867.503883	0.18343	7.9747E-05	0.27578	0.0001199	0.45921	0.00019965	434.7592572336102	48.208	2.026	47.841	47.285	49.311	-0.36728					121	48	5	0	0	0	0.87576	1	18404	18404		0.79363	0	1	410900000			28214	8069	17948	18042	27099	27099					0.06483159914284897
RRGRGPGA	8	Unmodified	_RRGRGPGA_					0	0	0			REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF	REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF	MSMS	HCT116MG_D190212_S4	4	413.7397155761719	2	413.74136	825.468167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.382	1	40.003	39.503	40.503	-0.37828								0	0	0	0.8837	1	14813	14813		2.8892	0	1		+		28215	16608	17949	18043	27100	27100					0.048451224572772844
RRGRRQRRQRR	11	Unmodified	_RRGRRQRRQRR_					0	0	0		ENST00000255977.6_2_7:140178977-140179166:-|nuORF	ENST00000255977.6_2_7:140178977-140179166:-|nuORF	ENST00000255977.6_2_7:140178977-140179166:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	527.660400390625	3	527.659967	1579.95807	0.42381	0.00022363	1.5611	0.00082374	1.9849	0.0010474	527.6605385423751	52.843	0.36016	52.843	52.639	52.999	0					10	6	2	0	0	0	0.74191	1	20241	20241		0.08335	0	1	23557000			28216	6817	17950	18044	27101	27101					0.1912909445375135
RRGRRRRP	8	Unmodified	_RRGRRRRP_					0	0	0		ENST00000342854.9_2_5:133450446-133450680:+|nuORF	ENST00000342854.9_2_5:133450446-133450680:+|nuORF	ENST00000342854.9_2_5:133450446-133450680:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	370.7350769042969	3	370.571096	1108.69146	0.091883	3.4049E-05	1.1121	0.00041212	1.204	0.00044617	370.5713152686026	54.385	0.20854	54.062	53.984	54.192	-0.32349					5	3	2	0	0	0	0.3361	1	20341	20341		0.40072	0	1	1152900			28217	7235	17951	18045	27102	27102					0.14146035962198766
RRGSQIVP	8	Unmodified	_RRGSQIVP_					0	0	0		L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|66|3|sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|66|3|sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|66|3|sense	MULTI-MSMS	HCT116MG_D190212_S1	1	456.7727355957031	2	456.772326	911.530098	-0.086499	-3.951E-05	0.62612	0.00028599	0.53962	0.00024648	456.7725790034996	48.383	1.858	48.383	47.789	49.647	0					57	35	2	0	0	0	0.84759	1	18522	18522		5.7604	0	1	4944200000			28218	9285	17952	18046	27103	27103					0.07079429085740685
RRHCRHRRRRR	11	Unmodified	_RRHCRHRRRRR_					0	0	0		ENST00000361078.6_1_2:20550380-20550560:-|nuORF	ENST00000361078.6_1_2:20550380-20550560:-|nuORF	ENST00000361078.6_1_2:20550380-20550560:-|nuORF	MSMS	HCT116MG_D190212_S2	2	549.0665893554688	3	548.98943	1643.94646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.582	1	22.197	21.697	22.697	-0.3852								0	0	0	0.96208	1	8007	8007		0	0	1				28219	7357	17953	18047	27104	27104					0.15024574158746873
RRHFLHPRHHS	11	Unmodified	_RRHFLHPRHHS_					0	0	0			REV__LCE2D|p.R79H|1|0.34|ENSG00000187223|chr1:152664341-152664341|G/A|missense_variant	REV__LCE2D|p.R79H|1|0.34|ENSG00000187223|chr1:152664341-152664341|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	493.9373474121094	3	493.936215	1478.78682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.143	1	11.143	10.643	11.643	0								0	0	0	0.96208	1	3481	3481		0	0	1		+		28220	16972	17954	18048	27105	27105					0.06657344362588447
RRHHRKRA	8	Unmodified	_RRHHRKRA_					0	0	0			REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	MSMS	HCT116MG_D190212_S1	1	372.8956298828125	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.4763	1	3.4763	2.9763	3.9763	0								0	0	0	0.8837	1	1040	1040		0	0	1		+		28221	16015	17955	18049	27106	27106					0.11170347070901698
RRHHRKRA	8	Unmodified	_RRHHRKRA_					0	0	0			REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	MSMS	HCT116MG_D190212_S1	1	372.8954772949219	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0009	1	4.0009	3.5009	4.5009	0								0	0	0	0.8837	1	1199	1199		0	0	1		+		28222	16015	17955	18049	27107	27107					0.11170347070901698
RRHHRKRA	8	Unmodified	_RRHHRKRA_					0	0	0			REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	MSMS	HCT116MG_D190212_S1	1	372.89569091796875	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6079	1	4.6079	4.1079	5.1079	0								0	0	0	0.8837	1	1381	1381		0	0	1		+		28223	16015	17955	18049	27108	27108					0.11170347070901698
RRHHRKRA	8	Unmodified	_RRHHRKRA_					0	0	0			REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	MSMS	HCT116MG_D190212_S1	1	372.895751953125	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.17	1	7.17	6.67	7.67	0								0	0	0	0.8837	1	2164	2164		0	0	1		+		28224	16015	17955	18049	27109	27109					0.11170347070901698
RRHHRKRA	8	Unmodified	_RRHHRKRA_					0	0	0			REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	MSMS	HCT116MG_D190212_S1	1	372.89544677734375	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8639	1	7.8639	7.3639	8.3639	0								0	0	0	0.8837	1	2377	2377		0	0	1		+		28225	16015	17955	18049	27110	27110					0.11170347070901698
RRHHRKRA	8	Unmodified	_RRHHRKRA_					0	0	0			REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	MSMS	HCT116MG_D190212_S1	1	372.89569091796875	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9379	1	8.9379	8.4379	9.4379	0								0	0	0	0.8837	1	2703	2703		0	0	1		+		28226	16015	17955	18049	27111	27111					0.11170347070901698
RRHHRKRA	8	Unmodified	_RRHHRKRA_					0	0	0			REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	REV__ENST00000488757.5_1_6:29644775-29644817:-|nuORF	MSMS	HCT116MG_D190212_S1	1	372.8954162597656	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4904	1	9.4904	8.9904	9.9904	0								0	0	0	0.8837	1	2876	2876		0	0	1		+		28227	16015	17955	18049	27112	27112					0.11170347070901698
RRHKKRIQRLW	11	Unmodified	_RRHKKRIQRLW_					0	0	0		ENST00000461933.1_1_3:169684610-169686205:+|nuORF	ENST00000461933.1_1_3:169684610-169686205:+|nuORF	ENST00000461933.1_1_3:169684610-169686205:+|nuORF	MSMS	HCT116MG_D190212_S3	3	789.3300170898438	2	788.992209	1575.96987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.111	1	11.158	10.658	11.658	0.04739								0	0	0	0.96208	1	3397	3397		0	0	1				28228	8061	17956	18050	27113	27113					0.20491898424393185
RRHRARHK	8	Unmodified	_RRHRARHK_					0	0	0		CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	372.89569091796875	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9601	1	5.9601	5.4601	6.4601	0								0	0	0	0.8837	1	1797	1797		0	0	1				28229	303	17957	18051	27114	27114					0.11170347070878961
RRHRARHK	8	Unmodified	_RRHRARHK_					0	0	0		CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	372.8960266113281	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3942	1	8.3942	7.8942	8.8942	0								0	0	0	0.8837	1	2537	2537		0	0	1				28230	303	17957	18051	27115	27115					0.11170347070878961
RRHRARHK	8	Unmodified	_RRHRARHK_					0	0	0		CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	373.08038330078125	3	372.89558	1115.66491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.055428	1	0.051488	-0.44851	0.55149	-0.0039395								0	0	0	0.8837	1	22	22		0	0	1				28231	303	17957	18051	27116	27116					0.11170347070878961
RRHREWRVSTR	11	Unmodified	_RRHREWRVSTR_					0	0	0			REV__ENST00000419690.5_1_X:24167846-24170939:+|nuORF	REV__ENST00000419690.5_1_X:24167846-24170939:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	769.9310302734375	2	769.929806	1537.84506	1.0927	0.00084131	0.58546	0.00045076	1.6782	0.0012921	769.9302521985492	29.77	0.20686	29.469	29.34	29.547	-0.30095					11	3	4	0	0	0	0.74191	1	10921	10921		6.6304	6.6304	1	187070000	+		28232	15510	17958	18052	27117	27117					0.0976498121719942
RRHREWRVSTR	11	Unmodified	_RRHREWRVSTR_					0	0	0			REV__ENST00000419690.5_1_X:24167846-24170939:+|nuORF	REV__ENST00000419690.5_1_X:24167846-24170939:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	769.929806	1537.84506	0.96623	0.00074393	0.69632	0.00053612	1.6626	0.00128	769.9302798581598	29.451	0.31241	29.451	29.321	29.633	0	-0.080929	-2.1813E-05	NaN	6.6304	18	5	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291980000	+		28233	15510	17958	18052							0.0976498121719942
RRHREWRVSTR	11	Unmodified	_RRHREWRVSTR_					0	0	0			REV__ENST00000419690.5_1_X:24167846-24170939:+|nuORF	REV__ENST00000419690.5_1_X:24167846-24170939:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	769.929806	1537.84506	0.76362	0.00058794	0.92226	0.00071008	1.6859	0.001298	769.9302065831099	29.82	0.16215	29.584	29.5	29.662	-0.23655	0.05202	0.0003261	NaN	6.6304	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8256800	+		28234	15510	17958	18052							0.0976498121719942
RRHRQRKRERK	11	Unmodified	_RRHRQRKRERK_					0	0	0		ENST00000543442.1_1_12:67660488-67660587:-|nuORF	ENST00000543442.1_1_12:67660488-67660587:-|nuORF	ENST00000543442.1_1_12:67660488-67660587:-|nuORF	MSMS	HCT116MG_D190212_S1	1	803.4911499023438	2	803.490896	1604.96724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.256	1	41.256	40.756	41.756	0								0	0	0	0.96208	1	15530	15530		0	0	1				28235	8703	17959	18053	27118	27118					0.18895443019437153
RRHRRRRSPPP	11	Unmodified	_RRHRRRRSPPP_					0	0	0		sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1;sp|F5HE12|UL35_HCMVMTegumentproteinUL35OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL35PE=3SV=1	sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	MSMS	HCT116MG_D190212_S1	1	490.963623046875	3	490.962764	1469.86646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.395	1	18.395	17.895	18.895	0								0	0	0	0.95705	1	6320	6320		2.6312	0	1				28236	18198	17960	18054	27119	27119					0.15032411036577287
RRHTLRAAER	10	Unmodified	_RRHTLRAAER_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	HCT116MG_D190212_S1	1	633.8705444335938	2	633.368518	1264.72248	0.51716	0.00032755	0.85949	0.00054437	1.3766	0.00087192	633.3689708930365	50.258	0.51511	50.258	50.059	50.574	0					22	9	3	0	0	0	0.88303	1	19171	19171		2.7352	0	1	50299000			28237	4413	17961	18055	27120	27120					0.1007114448577795
RRHWGGNVL	9	Unmodified	_RRHWGGNVL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	HCT116MG_D190212_S2	2	365.5370788574219	3	365.537058	1093.58934	-0.25507	-9.3238E-05	-0.0050785	-1.8564E-06	-0.26015	-9.5095E-05	365.53701519440955	28.744	0.25424	28.428	28.301	28.555	-0.31613					6	4	2	0	0	0	0.10244	1	10522	10522		57.722	37.141	1	49921000			28238	4012	17962	18056	27121	27121					0.046293250999497104
RRHWGGNVL	9	Unmodified	_RRHWGGNVL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	HCT116MG_D190212_S2	2	547.8023681640625	2	547.801949	1093.58934	0.38885	0.00021301	0.1704	9.3346E-05	0.55925	0.00030636	547.8020720544323	28.744	0.25424	28.428	28.301	28.555	-0.31613					8	4	3	0	0	0	0.040027	1	10524	10524		88.904	50.93	1	42165000			28239	4012	17962	18056	27122	27122					0.046293250999497104
RRIEIAHTL	9	Unmodified	_RRIEIAHTL_					0	0	0		ENSG00000197576|ENST00000360046|HOXA4;HOXD4|p.R182H|1|0.19|ENSG00000170166|chr2:176152719-176152719|G/A|missense_variant;ENST00000567101.2_1_17:46685206-46710927:-|nuORF;ENST00000467897.2_1_7:27168846-27192162:-|nuORF;ENSG00000170166|ENST00000306324|HOXD4;ENSG00000260027|ENST00000239165|HOXB7	ENSG00000197576|ENST00000360046|HOXA4;ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MULTI-MSMS	HCT116MG_D190212_S1	1	370.2242736816406	3	370.224368	1107.65128	0.15083	5.584E-05	-0.055876	-2.0687E-05	0.094952	3.5153E-05	370.2242212298725	28.796	0.26157	28.796	28.641	28.903	0					12	4	4	0	0	0	0.023778	1	10513	10513		84.522	33.107	1	22645000			28240	6156;6622	17963	18057	27123	27123					0.10175631728429835
RRIEIAHTL	9	Unmodified	_RRIEIAHTL_					0	0	0		ENSG00000197576|ENST00000360046|HOXA4;HOXD4|p.R182H|1|0.19|ENSG00000170166|chr2:176152719-176152719|G/A|missense_variant;ENST00000567101.2_1_17:46685206-46710927:-|nuORF;ENST00000467897.2_1_7:27168846-27192162:-|nuORF;ENSG00000170166|ENST00000306324|HOXD4;ENSG00000260027|ENST00000239165|HOXB7	ENSG00000197576|ENST00000360046|HOXA4;ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MULTI-MSMS	HCT116MG_D190212_S1	1	554.8330688476562	2	554.832914	1107.65128	0.72353	0.00040144	-0.3102	-0.00017211	0.41333	0.00022933	554.8326679884717	28.796	0.20889	28.796	28.694	28.903	0					5	3	2	0	0	0	0.077982	1	10522	10522		62.573	14.824	1	9271200			28241	6156;6622	17963	18057	27124	27124					0.10175631728429835
RRIEIAHTL	9	Unmodified	_RRIEIAHTL_					0	0	0		ENSG00000197576|ENST00000360046|HOXA4;HOXD4|p.R182H|1|0.19|ENSG00000170166|chr2:176152719-176152719|G/A|missense_variant;ENST00000567101.2_1_17:46685206-46710927:-|nuORF;ENST00000467897.2_1_7:27168846-27192162:-|nuORF;ENSG00000170166|ENST00000306324|HOXD4;ENSG00000260027|ENST00000239165|HOXB7	ENSG00000197576|ENST00000360046|HOXA4;ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MULTI-MSMS	HCT116MG_D190212_S2	2	370.22412109375	3	370.224368	1107.65128	-0.086045	-3.1856E-05	-0.21748	-8.0517E-05	-0.30353	-0.00011237	370.2243129879314	29.306	0.30733	28.99	28.863	29.17	-0.31613					10	5	3	0	0	0	0.020353	1	10737	10737		87.258	35.843	1	83430000			28242	6156;6622	17963	18057	27125	27125					0.10175631728429835
RRIEIAHTL	9	Unmodified	_RRIEIAHTL_					0	0	0		ENSG00000197576|ENST00000360046|HOXA4;HOXD4|p.R182H|1|0.19|ENSG00000170166|chr2:176152719-176152719|G/A|missense_variant;ENST00000567101.2_1_17:46685206-46710927:-|nuORF;ENST00000467897.2_1_7:27168846-27192162:-|nuORF;ENSG00000170166|ENST00000306324|HOXD4;ENSG00000260027|ENST00000239165|HOXB7	ENSG00000197576|ENST00000360046|HOXA4;ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MULTI-MSMS	HCT116MG_D190212_S2	2	554.8330688476562	2	554.832914	1107.65128	0.44721	0.00024813	-0.66877	-0.00037106	-0.22156	-0.00012293	554.8328291576826	29.306	0.25529	28.99	28.812	29.067	-0.31613					7	4	2	0	0	0	0.0063854	1	10743	10743		125.53	62.956	1	53107000			28243	6156;6622	17963	18057	27126	27126					0.10175631728429835
RRIFLEWRT	9	Unmodified	_RRIFLEWRT_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.S709Yfs*25|1|0.07|ENSG00000175054|chr3:142556093-142556094|AA/-|frameshift_variant;ATR|p.S927Qfs*4|1|0.34|ENSG00000175054|chr3:142553254-142553255|-/A|frameshift_variant;ATR|p.N1135*|1|0.36|ENSG00000175054|chr3:142542712-142542713|-/A|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MSMS	HCT116MG_D190212_S1	1	426.24591064453125	3	426.247285	1275.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.425	1	48.425	47.925	48.925	0								0	0	0	0.76995	1	18426	18426		1.0715	0	1				28244	5359	17964	18058	27127	27127					0.09319296028115787
RRILGHLVDI	10	Unmodified	_RRILGHLVDI_					0	0	0			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MULTI-MSMS	HCT116MG_D190212_S1	1	596.3701782226562	2	596.369664	1190.72478	0.4744	0.00028292	-0.1396	-8.3251E-05	0.3348	0.00019967	596.3692010647935	61.54	1.6078	61.54	61.004	62.612	0					68	30	3	0	0	0	0.88076	1	23704	23704		3.2813	1.7994	1	9201800	+		28245	10525	17965	18059	27128	27128					0.1370418017090742
RRIQFPIEM	9	Unmodified	_RRIQFPIEM_					0	0	0		nc|ENSG00000273749|Q7L576-2|CYFIP1;KBTBD2-CYFIP1|1|fusion;ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	595.3300170898438	2	595.32915	1188.64375	0.99713	0.00059362	0.31706	0.00018875	1.3142	0.00078238	595.3292881722351	47.755	0.25848	47.622	47.48	47.738	-0.13281					7	4	2	0	0	0	0.035349	1	18250	18250		81.89	46.958	1	16131000			28246	6671	17966	18060	27129	27129					0.05697156136488957
RRKAIKLA	8	Unmodified	_RRKAIKLA_					0	0	0		ENST00000489338.6_1_6:88125312-88173965:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206;ENST00000513191.1_1_6:88146506-88173965:+|nuORF	ENST00000489338.6_1_6:88125312-88173965:+|nuORF	ENST00000489338.6_1_6:88125312-88173965:+|nuORF	MSMS	HCT116MG_D190212_S3	3	478.32861328125	2	478.329811	954.645068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.266	1	61.025	60.525	61.525	-0.24158								0	0	0	0.8837	1	23379	23379		0	0	1				28247	6667	17967	18061	27130	27130					0.16593158287537335
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	385.2204895019531	3	385.220735	1152.64038	-0.0098855	-3.8081E-06	-0.13432	-5.1743E-05	-0.14421	-5.5552E-05	385.2205827064317	35.505	0.25811	35.505	35.371	35.63	0					9	4	3	0	0	0	0.061422	1	13234	13234		55.235	39.086	1	15806000			28248	7098	17968	18062	27131	27131					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	577.3270263671875	2	577.327465	1152.64038	0.48504	0.00028003	0.038446	2.2196E-05	0.52349	0.00030222	577.3274651572774	35.658	0.35972	35.515	35.335	35.695	-0.14245					12	6	2	0	0	0	0.0058997	1	13292	13292		129.77	72.05	1	279410000			28249	7098	17968	18062	27132	27132					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	385.2204895019531	3	385.220735	1152.64038	0.045776	1.7634E-05	-0.021677	-8.3504E-06	0.024099	9.2836E-06	385.2206707125882	35.658	0.35972	35.515	35.335	35.695	-0.14245					18	6	4	0	0	0	0.055677	1	13295	13295		57.249	36.835	1	349590000			28250	7098	17968	18062	27133	27133					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	385.22113037109375	3	385.220735	1152.64038	0.028813	1.1099E-05	0.060598	2.3344E-05	0.089411	3.4443E-05	385.2207279806255	35.846	0.3415	35.546	35.388	35.729	-0.30042					20	7	4	0	0	0	0.016701	1	13212	13212		80.676	56.875	1	57647000			28251	7098	17968	18062	27134	27134					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	577.3275756835938	2	577.327465	1152.64038	0.54722	0.00031593	-0.18828	-0.0001087	0.35894	0.00020723	577.3273358911696	35.812	0.25787	35.512	35.42	35.678	-0.30042					14	5	3	0	0	0	0.0201	1	13215	13215		96.367	63.581	1	34447000			28252	7098	17968	18062	27135	27135					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	385.220947265625	3	385.220735	1152.64038	0.28872	0.00011122	-0.3281	-0.00012639	-0.039374	-1.5168E-05	385.2205760953388	36.01	0.28228	35.625	35.491	35.773	-0.38558					12	5	3	0	0	0	0.12205	1	13156	13156		42.312	20.513	1	16621000			28253	7098	17968	18062	27136	27136					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	577.327392578125	2	577.327465	1152.64038	0.5911	0.00034126	-0.38738	-0.00022365	0.20372	0.00011761	577.3273097053074	36.02	0.28228	35.634	35.491	35.773	-0.38558					11	5	3	0	0	0	0.045679	1	13171	13171		76.825	48.338	1	12334000			28254	7098	17968	18062	27137	27137					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000320371.6_1_21:30369936-30370179:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000320371.6_1_21:30369936-30370179:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	577.327465	1152.64038	0.56821	0.00032804	-0.34294	-0.00019799	0.22527	0.00013005	577.3271123284696	35.534	0.20587	35.534	35.424	35.63	0	-0.014562	-0.00032523	NaN	129.77	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6712200			28255	7098	17968	18062							0.07016229354144343
RRKFYLIL	8	Unmodified	_RRKFYLIL_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MSMS	HCT116MG_D190212_S1	1	554.85498046875	2	554.853119	1107.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.782	1	10.782	10.282	11.282	0								0	0	0	0.8837	1	3335	3335		0.79363	0	1		+		28256	14028	17969	18063	27138	27138					0.14214598118860522
RRKIWFYPARY	11	Unmodified	_RRKIWFYPARY_					0	0	0			REV__nc|ENSG00000162594|Q5VWK5-5|IL23R	REV__nc|ENSG00000162594|Q5VWK5-5|IL23R	MSMS	HCT116MG_D190212_S2	2	778.4376831054688	2	778.43587	1554.85719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.947	1	58.782	58.282	59.282	-0.1653								0	0	0	0.96192	1	22793	22793		0.30703	0.30703	1		+		28257	17185	17970	18064	27139	27139					0.10195204907699917
RRKKGLLL	8	Unmodified	_RRKKGLLL_					0	0	0		ENSG00000102981|ENST00000458121|PARD6A;nc|ENSG00000102981|Q9NPB6|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	ENSG00000102981|ENST00000458121|PARD6A	MULTI-MSMS	HCT116MG_D190212_S2	2	492.34619140625	2	492.345461	982.676368	0.35401	0.0001743	0.076773	3.7799E-05	0.43079	0.0002121	492.34540548723794	61.469	1.6325	61.327	60.843	62.475	-0.14227					65	31	3	0	0	0	0.88026	3	23725	23725;23966;24198		0	0	1	11273000			28258	1865	17971	18065	27140;27141;27142	27140					0.18433731321670166
RRKKKKKK	8	Unmodified	_RRKKKKKK_					0	0	0		SLC4A3|p.G495Efs*9|1|0.3|ENSG00000114923|chr2:219633898-219633898|G/-|frameshift_variant;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;ENST00000341049.6_1_7:116199659-116199932:+|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000341049.6_1_7:116199659-116199932:+|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S2	2	367.2690124511719	3	367.268131	1098.78256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.677	1	64.564	64.064	65.064	-0.11256								0	0	0	0.8837	1	25008	25008		0.40072	0	1				28259	15902;7216	17972	18066	27143	27143					0.23712486886961415
RRKKKKKK	8	Unmodified	_RRKKKKKK_					0	0	0		SLC4A3|p.G495Efs*9|1|0.3|ENSG00000114923|chr2:219633898-219633898|G/-|frameshift_variant;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;ENST00000341049.6_1_7:116199659-116199932:+|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000341049.6_1_7:116199659-116199932:+|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S4	4	367.222900390625	3	367.268131	1098.78256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.3	1	63.056	62.556	63.556	-0.24392								0	0	0	0.8837	1	23874	23874		0.40072	0	1				28260	15902;7216	17972	18066	27144	27144					0.23712486886961415
RRKKKKKKRTN	11	Unmodified	_RRKKKKKKRTN_					0	0	0		ENST00000341049.6_1_7:116199659-116199932:+|nuORF	ENST00000341049.6_1_7:116199659-116199932:+|nuORF	ENST00000341049.6_1_7:116199659-116199932:+|nuORF	MSMS	HCT116MG_D190212_S1	1	735.9963989257812	2	735.994417	1469.97428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.238	1	29.238	28.738	29.738	0								0	0	0	0.95196	1	10679	10679		5.2969	4.3346	1				28261	7216	17973	18067	27145	27145					0.2580936284730342
RRKKKKKKRTN	11	Unmodified	_RRKKKKKKRTN_					0	0	0		ENST00000341049.6_1_7:116199659-116199932:+|nuORF	ENST00000341049.6_1_7:116199659-116199932:+|nuORF	ENST00000341049.6_1_7:116199659-116199932:+|nuORF	MSMS	HCT116MG_D190212_S2	2	735.9974975585938	2	735.994417	1469.97428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.382	1	62.246	61.746	62.746	-0.13585								0	0	0	0.96208	1	24178	24178		0	0	1				28262	7216	17973	18067	27146	27146					0.2580936284730342
RRKKKKKYRKK	11	Unmodified	_RRKKKKKYRKK_					0	0	0			REV__ENSG00000166012|ENST00000448108|TAF1D	REV__ENSG00000166012|ENST00000448108|TAF1D	MSMS	HCT116MG_D190212_S1	1	516.3563232421875	3	516.354599	1546.04197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.544	1	63.544	63.044	64.044	0								0	0	0	0.96208	1	24547	24547		0	0	1		+		28263	13086	17974	18068	27147	27147					0.29078812778084284
RRKKRKPKKPV	11	Unmodified	_RRKKRKPKKPV_					0	0	0			REV__ENSG00000161914|ENST00000293771|ZNF653	REV__ENSG00000161914|ENST00000293771|ZNF653	MSMS	HCT116MG_D190212_S4	4	474.327392578125	3	474.328161	1419.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.773	1	46.402	45.902	46.902	-0.37134								0	0	0	0.9619	1	17279	17279		0.094841	0	1		+		28264	12861	17975	18069	27148	27148					0.2694716582395813
RRKLGPLA	8	Unmodified	_RRKLGPLA_					0	0	0		ENST00000355202.8_1_19:38210450-38210525:-|nuORF	ENST00000355202.8_1_19:38210450-38210525:-|nuORF	ENST00000355202.8_1_19:38210450-38210525:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	456.3534851074219	2	455.800886	909.587219	0.19308	8.8008E-05	0.054748	2.4954E-05	0.24783	0.00011296	455.80075586021917	60.985	0.72598	60.836	60.527	61.253	-0.14852					16	13	2	0	0	0	0.33574	1	23665	23665		0	0	1	5933800			28265	7290	17976	18070	27149	27149					0.1288089636212817
RRKLHQRNKRQ	11	Unmodified	_RRKLHQRNKRQ_					0	0	0		ENST00000459737.5_1_14:56079280-56084690:+|nuORF	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	507.31024169921875	3	507.309941	1518.90799	0.48566	0.00024638	0.09013	4.5724E-05	0.57579	0.0002921	507.30989155930934	54.254	2.196	54.254	53.307	55.503	0					159	42	6	0	0	0	0.74191	1	21076	21076		1.3296	0.87513	1	1482699999.9999998			28266	8039	17977	18071	27150	27150					0.16929547005247514
RRKLRLKPP	9	Unmodified	_RRKLRLKPP_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MULTI-MSMS	HCT116MG_D190212_S1	1	582.3955078125	2	582.396016	1162.77748	0.45012	0.00026215	0.295	0.00017181	0.74512	0.00043396	582.395954733945	58.599	0.20365	58.599	58.514	58.717	0					9	3	3	0	0	0	0.76814	1	22602	22602		0.52476	0	1	37305000	+		28267	11606	17978	18072	27151	27151					0.20260183024356593
RRKLRLKPP	9	Unmodified	_RRKLRLKPP_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S2	2	582.395751953125	2	582.396016	1162.77748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.72	1	58.555	58.055	59.055	-0.1653								0	0	0	0.7701	1	22701	22701		0.52476	0.12405	1		+		28268	11606	17978	18072	27152	27152					0.20260183024356593
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S2	2	432.2808532714844	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.95	1	60.801	60.301	61.301	-0.14852								0	0	0	0.97045	1	23600	23600		0.15932	0	1		+		28269	11606	17979	18073	27153	27153					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S2	2	432.2803955078125	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.118	1	61.982	61.482	62.482	-0.13585								0	0	0	0.97045	1	24071	24071		0.15932	0.036457	1		+		28270	11606	17979	18073	27154	27154					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	432.28021240234375	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.699	1	41.396	40.896	41.896	-0.30257								0	0	0	0.97045	1	15512	15512		0.15932	0	1		+		28271	11606	17979	18073	27155	27155					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	432.2801818847656	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.999	1	43.693	43.193	44.193	-0.30616								0	0	0	0.97045	1	16434	16434		0.15932	0.064481	1		+		28272	11606	17979	18073	27156	27156					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	432.2803039550781	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.12	1	44.811	44.311	45.311	-0.30927								0	0	0	0.97045	1	16885	16885		0.15932	0.064481	1		+		28273	11606	17979	18073	27157	27157					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	432.2803649902344	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.272	1	45.96	45.46	46.46	-0.31237								0	0	0	0.96769	1	17344	17344		0.77653	0.27058	1		+		28274	11606	17979	18073	27158	27158					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	432.2803649902344	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.838	1	46.524	46.024	47.024	-0.31405								0	0	0	0.97045	1	17572	17572		0.15932	0.01943	1		+		28275	11606	17979	18073	27159	27159					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	432.2803649902344	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.414	1	47.099	46.599	47.599	-0.31525								0	0	0	0.97045	1	17805	17805		0.15932	0	1		+		28276	11606	17979	18073	27160	27160					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	432.2796936035156	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.939	1	49.624	49.124	50.124	-0.31525								0	0	0	0.97045	1	18819	18819		0.15932	0.01943	1		+		28277	11606	17979	18073	27161	27161					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	432.2802429199219	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.645	1	50.332	49.832	50.832	-0.31381								0	0	0	0.97045	1	19103	19103		0.15932	0.064481	1		+		28278	11606	17979	18073	27162	27162					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	432.2802429199219	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.215	1	50.903	50.403	51.403	-0.31166								0	0	0	0.97045	1	19332	19332		0.15932	0.064481	1		+		28279	11606	17979	18073	27163	27163					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S4	4	432.2801513671875	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.034	1	40.657	40.157	41.157	-0.37732								0	0	0	0.97045	1	15076	15076		0.15932	0.064481	1		+		28280	11606	17979	18073	27164	27164					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S4	4	432.27960205078125	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.56	1	41.184	40.684	41.684	-0.37637								0	0	0	0.97045	1	15256	15256		0.15932	0.064481	1		+		28281	11606	17979	18073	27165	27165					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S4	4	432.2803955078125	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.857	1	44.484	43.984	44.984	-0.37326								0	0	0	0.97045	1	16530	16530		0.15932	0.064481	1		+		28282	11606	17979	18073	27166	27166					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S4	4	432.2799377441406	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.046	1	45.674	45.174	46.174	-0.37206								0	0	0	0.97045	1	17007	17007		0.15932	0	1		+		28283	11606	17979	18073	27167	27167					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S4	4	432.28021240234375	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.632	1	46.26	45.76	46.76	-0.37134								0	0	0	0.97045	1	17221	17221		0.15932	0.064481	1		+		28284	11606	17979	18073	27168	27168					0.18280781352450504
RRKLRLKPPM	10	Unmodified	_RRKLRLKPPM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S4	4	432.0848388671875	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.36	1	46.989	46.489	47.489	-0.37038								0	0	0	0.97045	1	17516	17516		0.15932	0.01943	1		+		28285	11606	17979	18073	27169	27169					0.18280781352450504
RRKMKPLLPR	10	Unmodified	_RRKMKPLLPR_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000366362.3_1_12:2973410-2973858:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	432.28021240234375	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.721	1	62.592	62.092	63.092	-0.12924								0	0	0	0.97116	1	24314	24314		0	0	1				28286	2277	17980	18074	27170	27170					0.1828078135247324
RRKMKPLLPR	10	Unmodified	_RRKMKPLLPR_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000366362.3_1_12:2973410-2973858:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	432.27984619140625	3	432.279931	1293.81796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.055	1	62.811	62.311	63.311	-0.24392								0	0	0	0.97116	1	23805	23805		0	0	1				28287	2277	17980	18074	27171	27171					0.1828078135247324
RRKNKRKRKA	10	Unmodified	_RRKNKRKRKA_					0	0	0			REV__ENST00000552092.1_1_12:117317134-117317281:-|nuORF	REV__ENST00000552092.1_1_12:117317134-117317281:-|nuORF	MSMS	HCT116MG_D190212_S1	1	671.2813720703125	2	670.944728	1339.8749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.102	1	15.102	14.602	15.602	0								0	0	0	0.96937	1	4993	4993		0.40072	0.093686	1		+		28288	16426	17981	18075	27172	27172					0.21855964953192597
RRKPKPKLLLL	11	Unmodified	_RRKPKPKLLLL_					0	0	0			REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF	REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF	MSMS	HCT116MG_D190212_S1	1	681.83154296875	2	681.477006	1360.93946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.524	1	44.524	44.024	45.024	0								0	0	0	0.96208	1	16846	16846		0	0	1		+		28289	15480	17982	18076	27173	27173					0.2734272698667155
RRKQWRRQAYL	11	Unmodified	_RRKQWRRQAYL_					0	0	0			REV__nc|ENSG00000148219|O75129-2|ASTN2	REV__nc|ENSG00000148219|O75129-2|ASTN2	MULTI-SECPEP	HCT116MG_D190212_S2	2	520.2620239257812	3	520.970925	1559.89095	0.29974	0.00015616	1.5091	0.00078622	1.8089	0.00094238	521.3058954173424	28.561	0.15418	28.231	28.133	28.287	-0.32987					4	2	2	0	0	0	0.36627	1	10392	10392		0.50596	0.43269	1	15215000	+		28290	12533	17983	18077	27174	27174					0.13339626399488225
RRKRAIRRRW	10	Unmodified	_RRKRAIRRRW_					0	0	0		IQSEC2|p.E127Ifs*81|1|0.27|ENSG00000124313|chrX:53320746-53320747|-/CGATT|frameshift_variant	IQSEC2|p.E127Ifs*81|1|0.27|ENSG00000124313|chrX:53320746-53320747|-/CGATT|frameshift_variant	IQSEC2|p.E127Ifs*81|1|0.27|ENSG00000124313|chrX:53320746-53320747|-/CGATT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	727.4639282226562	2	727.463619	1452.91268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.879	1	62.879	62.379	63.379	0								0	0	0	0.97116	1	24288	24288		0	0	1				28291	9245	17984	18078	27175	27175					0.20434475938668584
RRKREEHQRWY	11	Unmodified	_RRKREEHQRWY_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MSMS	HCT116MG_D190212_S2	2	822.4342041015625	2	822.434921	1642.85529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.494	1	34.319	33.819	34.819	-0.17512								0	0	0	0.96149	1	12835	12835		0.30703	0.03801	1				28292	3078	17985	18079	27176	27176					0.059575441517836225
RRKRGRFH	8	Unmodified	_RRKRGRFH_					0	0	0		ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant;ENSG00000170396|ENST00000302277|ZNF804A	ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant	ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	556.8369750976562	2	556.836657	1111.65876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.695	1	10.695	10.195	11.195	0								0	0	0	0.8837	1	3300	3300		0	0	1				28293	5128	17986	18080	27177	27177					0.10739828839359689
RRKRKKQPRIR	11	Unmodified	_RRKRKKQPRIR_					0	0	0			REV__ENSG00000159714|ENST00000565726|ZDHHC1	REV__ENSG00000159714|ENST00000565726|ZDHHC1	MSMS	HCT116MG_D190212_S1	1	508.0075988769531	3	508.006081	1520.99641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.181	1	50.181	49.681	50.681	0								0	0	0	0.96208	1	19141	19141		0	0	1		+		28294	12811	17987	18081	27178	27178					0.2567558731570898
RRKRLRHRGR	10	Unmodified	_RRKRLRHRGR_					0	0	0		nc|ENSG00000088053|Q9HCN6-2|GP6;nc|ENSG00000088053|Q9HCN6|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	MULTI-MSMS	HCT116MG_D190212_S1	1	464.3729248046875	3	464.299488	1389.87663	0.22144	0.00010282	-0.01099	-5.1026E-06	0.21045	9.7713E-05	464.29941646303536	55.684	0.35943	55.684	55.554	55.913	0					8	6	2	0	0	0	0.89438	1	21466	21466		0	0	1	387900000			28295	9395	17988	18082	27179	27179					0.19729018761813677
RRKRLRHRGR	10	Unmodified	_RRKRLRHRGR_					0	0	0		nc|ENSG00000088053|Q9HCN6-2|GP6;nc|ENSG00000088053|Q9HCN6|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	MULTI-MSMS	HCT116MG_D190212_S4	4	464.29986572265625	3	464.299488	1389.87663	0.15457	7.1765E-05	0.36738	0.00017058	0.52195	0.00024234	464.29972839243555	56.494	0.36794	56.188	55.937	56.305	-0.30626					11	6	2	0	0	0	0.89438	1	21185	21185		0	0	1	2608000			28296	9395	17988	18082	27180	27180					0.19729018761813677
RRKRRKSIF	9	Unmodified	_RRKRRKSIF_					0	0	0		ENSG00000198879|ENST00000397167|SFMBT2	ENSG00000198879|ENST00000397167|SFMBT2	ENSG00000198879|ENST00000397167|SFMBT2	MSMS	HCT116MG_D190212_S1	1	623.900634765625	2	623.901997	1245.78944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.265	1	36.265	35.765	36.765	0								0	0	0	0.76967	1	13514	13514		2.0598	0.57785	1				28297	6291	17989	18083	27181	27181					0.17637799767544493
RRKRRRRTQR	10	Unmodified	_RRKRRRRTQR_					0	0	0			REV__ENST00000301280.9_1_19:4442242-4442314:+|nuORF	REV__ENST00000301280.9_1_19:4442242-4442314:+|nuORF	MSMS	HCT116MG_D190212_S2	2	734.9659423828125	2	734.967057	1467.91956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.675	1	34.516	34.016	35.016	-0.15834								0	0	0	0.9696	1	12909	12909		0.35063	0	1		+		28298	14789	17990	18084	27182	27182					0.20431788819246322
RRKRRSQPRRP	11	Unmodified	_RRKRRSQPRRP_					0	0	0			REV__SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	REV__SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	498.3106689453125	3	498.310052	1491.90833	0.40479	0.00020171	0.12245	6.1018E-05	0.52724	0.00026273	498.3100241158112	52.613	1.0899	52.613	51.756	52.845	0					71	20	5	0	0	0	0.74191	2	19799	19799;20028		0.094841	0.094841	1	348000000	+		28299	17537	17991	18085	27183;27184	27183					0.18204966725102167
RRKTAEKYRL	10	Unmodified	_RRKTAEKYRL_					0	0	0			REV__ENSG00000100601|ENST00000216489|ALKBH1	REV__ENSG00000100601|ENST00000216489|ALKBH1	MSMS	HCT116MG_D190212_S2	2	440.933349609375	3	440.933477	1319.7786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.58502	1	0.58108	0.081083	1.0811	-0.0039395								0	0	0	0.97054	1	191	191		0.13989	0	1		+		28300	11096	17992	18086	27185	27185					0.131503526025881
RRKYLLKALFK	11	Unmodified	_RRKYLLKALFK_					0	0	0		ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	MSMS	HCT116MG_D190212_S3	3	718.281005859375	2	718.466638	1434.91872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.616	1	58.347	57.847	58.847	-0.26932								0	0	0	0.9598	1	22302	22302		1.1933	0.79263	1				28301	5236	17993	18087	27186	27186					0.21866136606945474
RRLAAATA	8	Unmodified	_RRLAAATA_					0	0	0			REV__nc|ENSG00000130487|Q96G42|KLHDC7B	REV__nc|ENSG00000130487|Q96G42|KLHDC7B	MSMS	HCT116MG_D190212_S3	3	415.2538757324219	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.403	1	59.144	58.644	59.644	-0.25832								0	0	0	0.8837	1	22620	22620		2.3027	0	1		+		28302	11924	17994	18088	27187	27187					0.07187757539975337
RRLENIRFL	9	Unmodified	_RRLENIRFL_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MSMS	HCT116MG_D190212_S2	2	406.2475891113281	3	406.247285	1215.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.371	1	39.293	38.793	39.793	-0.077835								0	0	0	0.040051	1	14816	14816		73.196	35.021	1				28303	911	17995	18089	27188	27188					0.12079296028127828
RRLERLEEEYL	11	Unmodified	_RRLERLEEEYL_					0	0	0			REV__ENSG00000175084|ENST00000373960|DES	REV__ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	HCT116MG_D190212_S4	4	753.40869140625	2	753.407172	1504.79979	0.92983	0.00070054	-0.44297	-0.00033374	0.48685	0.0003668	753.4069868283402	36.592	0.6685	36.207	35.819	36.487	-0.38486					29	12	3	0	0	0	0.74191	1	13310	13310		1.1933	1.1933	1	4360500	+		28304	13503	17996	18090	27189	27189					0.06758273120794911
RRLFQLYLL	9	Unmodified	_RRLFQLYLL_					0	0	0			REV__ENST00000491710.5_3_6:12015770-12015848:+|nuORF	REV__ENST00000491710.5_3_6:12015770-12015848:+|nuORF	MSMS	HCT116MG_D190212_S3	3	407.9203186035156	3	407.920397	1220.73936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.574	1	11.625	11.125	12.125	0.051658								0	0	0	0.77008	1	3556	3556		0.26902	0	1		+		28305	16044	17997	18091	27190	27190					0.13782252319015242
RRLFRRFRYQ	10	Unmodified	_RRLFRRFRYQ_					0	0	0		ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant;ENSG00000162714|ENST00000682384|ZNF496;nc|ENSG00000162714|Q96IT1-2|ZNF496	ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant	ZNF496|p.N515Tfs*6|1|0.38|ENSG00000162714|chr1:247300739-247300739|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	499.9618225097656	3	499.960249	1496.85892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.885	1	53.885	53.385	54.385	0								0	0	0	0.96263	1	20648	20648		1.9064	0.79662	1				28306	4546	17998	18092	27191	27191					0.13036258716306293
RRLGELREL	9	Unmodified	_RRLGELREL_					0	0	0		HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	381.2312927246094	3	381.231523	1140.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.086	1	30.819	30.319	31.319	-0.26704								0	0	0	0.24105	1	11454	11454		44.392	17.304	1				28307	1602	17999	18093	27192	27192					0.10803016757131445
RRLHCINKI	9	Unmodified	_RRLHCINKI_					0	0	0			REV__ENSG00000143369|ENST00000369047|ECM1	REV__ENSG00000143369|ENST00000369047|ECM1	MSMS	HCT116MG_D190212_S1	1	384.8894958496094	3	384.897598	1151.67097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.563	1	10.563	10.063	11.063	0								0	0	0	0.76998	1	3250	3250		0.96228	0.56156	1		+		28308	12386	18000	18094	27193	27193					0.10119684467508705
RRLIIPRLR	9	Unmodified	_RRLIIPRLR_					0	0	0			REV__ENSG00000132825|ENST00000370996|PPP1R3D	REV__ENSG00000132825|ENST00000370996|PPP1R3D	MSMS	HCT116MG_D190212_S4	4	398.2747802734375	3	398.275286	1191.80403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.091	1	47.722	47.222	48.222	-0.36907								0	0	0	0.77019	1	17799	17799		0.23584	0	1		+		28309	12006	18001	18095	27194	27194					0.2157987191567372
RRLKKKVY	8	Unmodified	_RRLKKKVY_					0	0	0			REV__ENST00000596623.2_2_19:53420656-53421197:-|nuORF	REV__ENST00000596623.2_2_19:53420656-53421197:-|nuORF	MSMS	HCT116MG_D190212_S2	2	545.7637329101562	2	545.864018	1089.71348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.109	1	11.82	11.32	12.32	-0.28953								0	0	0	0.8837	1	3943	3943		0	0	1		+		28310	16722	18002	18096	27195	27195					0.1722140286742615
RRLKKPKVLPL	11	Unmodified	_RRLKKPKVLPL_					0	0	0		ENST00000367265.7_1_1:202777435-202777672:-|nuORF	ENST00000367265.7_1_1:202777435-202777672:-|nuORF	ENST00000367265.7_1_1:202777435-202777672:-|nuORF	MSMS	HCT116MG_D190212_S3	3	674.469482421875	2	674.469181	1346.92381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.072	1	43.765	43.265	44.265	-0.30701								0	0	0	0.96208	1	16464	16464		0	0	1				28311	7383	18003	18097	27196	27196					0.26422440469605135
RRLLHRWRRLR	11	Unmodified	_RRLLHRWRRLR_					0	0	0			REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF	REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF	MSMS	HCT116MG_D190212_S4	4	540.011474609375	3	540.009826	1617.00765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.546	1	51.196	50.696	51.696	-0.35028								0	0	0	0.96192	1	19187	19187		0.08335	0.08335	1		+		28312	14979	18004	18098	27197	27197					0.2238240940985179
RRLLTPPPR	9	Unmodified	_RRLLTPPPR_					0	0	0		nc|ENSG00000175701|Q8NCU8-1|MTLN	nc|ENSG00000175701|Q8NCU8-1|MTLN	nc|ENSG00000175701|Q8NCU8-1|MTLN	MSMS	HCT116MG_D190212_S4	4	369.2369689941406	3	369.236608	1104.688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.886	1	56.586	56.086	57.086	-0.3004								0	0	0	0.77018	1	21337	21337		0.26902	0	1				28313	9558	18005	18099	27198	27198					0.13983928344964625
RRLPLRRRLRK	11	Unmodified	_RRLPLRRRLRK_					0	0	0		ENST00000321037.4_1_6:46097759-46107324:+|nuORF	ENST00000321037.4_1_6:46097759-46107324:+|nuORF	ENST00000321037.4_1_6:46097759-46107324:+|nuORF	MSMS	HCT116MG_D190212_S1	1	760.5137329101562	2	760.515851	1519.01715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.903	1	36.903	36.403	37.403	0								0	0	0	0.96208	1	13771	13771		0	0	1				28314	7101	18006	18100	27199	27199					0.2784017769536149
RRLQEPIVL	9	Unmodified	_RRLQEPIVL_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	562.3505249023438	2	562.35094	1122.68733	0.14024	7.8861E-05	-0.79535	-0.00044727	-0.65512	-0.00036841	562.3505083791083	40.358	0.25906	40.358	40.176	40.435	0					7	4	2	0	0	0	0.14171	1	15178	15178		49.933	17.147	1	10577000			28315	4764	18007	18101	27200	27200					0.13089088905257995
RRLQEPIVL	9	Unmodified	_RRLQEPIVL_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	562.3508911132812	2	562.35094	1122.68733	0.5533	0.00031115	-0.26309	-0.00014795	0.29021	0.0001632	562.3507996969075	40.356	0.36325	40.284	40.05	40.413	-0.072838					13	6	3	0	0	0	0.063511	1	15225	15225		68.081	35.295	1	19304000			28316	4764	18007	18101	27201	27201					0.13089088905257995
RRLQLIGL	8	Unmodified	_RRLQLIGL_					0	0	0			REV__HDAC8|p.R164Q|1|0.17|ENSG00000147099|chrX:72495215-72495215|C/T|missense_variant	REV__HDAC8|p.R164Q|1|0.17|ENSG00000147099|chrX:72495215-72495215|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	484.8219299316406	2	484.821818	967.629084	0.31105	0.00015081	-0.19249	-9.3324E-05	0.11856	5.7483E-05	484.8218043972868	46.725	0.25963	46.725	46.595	46.855	0					6	4	2	0	0	0	0.43493	1	17761	17761		46.921	2.5139	1	15585000	+		28317	16871	18008	18102	27202	27202					0.14397452050650372
RRLRHTLLVI	10	Unmodified	_RRLRHTLLVI_					0	0	0			REV__PCDHGA2|p.A713T|1|0.36|ENSG00000081853|chr5:141341108-141341108|G/A|missense_variant	REV__PCDHGA2|p.A713T|1|0.36|ENSG00000081853|chr5:141341108-141341108|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	426.2842712402344	3	426.282329	1275.82516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.53	1	58.359	57.859	58.859	-0.1703								0	0	0	0.96804	1	22623	22623		0.69767	0	1		+		28318	17394	18009	18103	27203	27203					0.19827837224556788
RRLRILDK	8	Unmodified	_RRLRILDK_					0	0	0			REV__BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant	REV__BIRC6|p.S2648Ffs*25|1|0.08|ENSG00000115760|chr2:32487769-32487770|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	357.2352294921875	3	357.236608	1068.688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.121	1	60.86	60.36	61.36	-0.2602								0	0	0	0.8837	1	23049	23049		0.40072	0	1		+		28319	10041	18010	18104	27204	27204					0.15639928344967302
RRLRKANTI	9	Unmodified	_RRLRKANTI_					0	0	0			REV__MRPS16|p.E108K|1|0.31|ENSG00000182180|chr10:73250944-73250944|C/T|missense_variant	REV__MRPS16|p.E108K|1|0.31|ENSG00000182180|chr10:73250944-73250944|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	564.3592529296875	2	564.359631	1126.70471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.893	1	42.893	42.393	43.393	0								0	0	0	0.76694	1	16190	16190		11.64	0	1		+		28320	17034	18011	18105	27205	27205					0.14642429230934795
RRLRLALLL	9	Unmodified	_RRLRLALLL_					0	0	0			REV__ENSG00000253159|ENST00000252085|PCDHGA12	REV__ENSG00000253159|ENST00000252085|PCDHGA12	MSMS	HCT116MG_D190212_S3	3	375.73687744140625	3	375.264387	1122.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.306	1	58.037	57.537	58.537	-0.26932								0	0	0	0.77018	1	22177	22177		0.26902	0	1		+		28321	14385	18012	18106	27206	27206					0.2148566479281726
RRLRLLRRRGL	11	Unmodified	_RRLRLLRRRGL_					0	0	0			REV__ENST00000357992.8_1_1:205600835-205601075:-|nuORF	REV__ENST00000357992.8_1_1:205600835-205601075:-|nuORF	MSMS	HCT116MG_D190212_S1	1	733.0661010742188	2	732.994752	1463.97495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.177	1	40.177	39.677	40.677	0								0	0	0	0.96149	1	15093	15093		0.30703	0	1		+		28322	15057	18013	18107	27207	27207					0.26152202286994
RRLRLPRWRRW	11	Unmodified	_RRLRLPRWRRW_					0	0	0			REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	MSMS	HCT116MG_D190212_S1	1	826.0042114257812	2	826.005651	1649.99675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.974	1	38.974	38.474	39.474	0								0	0	0	0.96208	1	14608	14608		0	0	1		+		28323	15525	18014	18108	27208	27208					0.19775007035536873
RRLRLRRRPPE	11	Unmodified	_RRLRLRRRPPE_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MSMS	HCT116MG_D190212_S1	1	752.97412109375	2	752.974016	1503.93348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.167	1	29.167	28.667	29.667	0								0	0	0	0.96208	1	10650	10650		0	0	1				28324	6646	18015	18109	27209	27209					0.20167021527686302
RRLRPLLRRRL	11	Unmodified	_RRLRPLLRRRL_					0	0	0		ENST00000453168.5_1_3:31574222-31574351:+|nuORF	ENST00000453168.5_1_3:31574222-31574351:+|nuORF	ENST00000453168.5_1_3:31574222-31574351:+|nuORF	MSMS	HCT116MG_D190212_S2	2	753.4261474609375	2	753.010402	1504.00625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.72	1	39.643	39.143	40.143	-0.077835								0	0	0	0.96208	1	14959	14959		0	0	1				28325	8000	18016	18110	27210	27210					0.274407753210653
RRLRRRQRLRR	11	Unmodified	_RRLRRRQRLRR_					0	0	0			REV__ENSG00000171119|ENST00000303212|NRTN	REV__ENSG00000171119|ENST00000303212|NRTN	MSMS	HCT116MG_D190212_S2	2	811.529296875	2	811.530356	1621.04616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.84	1	46.729	46.229	47.229	-0.11121								0	0	0	0.96208	1	17852	17852		0	0	1		+		28326	13332	18017	18111	27211	27211					0.2604771504434211
RRLWLLLRTSL	11	Unmodified	_RRLWLLLRTSL_					0	0	0		nc|ENSG00000179698|A6NE52-2|WDR97;ENSG00000179698|ENST00000323662|WDR97	nc|ENSG00000179698|A6NE52-2|WDR97	nc|ENSG00000179698|A6NE52-2|WDR97	MSMS	HCT116MG_D190212_S2	2	476.30657958984375	3	476.305022	1425.89324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.769	1	41.701	41.201	42.201	-0.068199								0	0	0	0.95686	1	15792	15792		1.1098	0	1				28327	5565	18018	18112	27212	27212					0.19732662084538788
RRLWRWWKL	9	Unmodified	_RRLWRWWKL_					0	0	0		chr12:54283225-54283827|478|34.15|0.0|21.7|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|478|34.15|0.0|21.7|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|478|34.15|0.0|21.7|+|1|HNRNPA1,HNRNPA1|2	MSMS	HCT116MG_D190212_S4	4	467.2791748046875	3	467.278919	1398.81493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.929	1	60.668	60.168	61.168	-0.26119								0	0	0	0.77025	1	22972	22972		0	0	1				28328	445	18019	18113	27213	27213					0.1314727428994047
RRMDVFTEA	9	Unmodified	_RRMDVFTEA_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	HCT116MG_D190212_S1	1	563.2810668945312	2	562.77949	1123.54443	0.40242	0.00022647	-0.072942	-4.105E-05	0.32948	0.00018542	562.7793497819365	34.085	0.31292	34.085	33.972	34.285	0					8	5	2	0	0	0	0.066823	1	12662	12662		66.457	41.057	1	6216200			28329	6409	18020	18114	27214	27214					-0.012402865482499692
RRMDVFTEA	9	Unmodified	_RRMDVFTEA_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MATCH	HCT116MG_D190212_S2	2		2	562.77949	1123.54443	0.51175	0.000288	-0.50372	-0.00028349	0.0080302	4.5192E-06	562.7790218155939	34.276	0.20799	34.101	33.967	34.175	-0.17511	0.0081181	-0.0004013	NaN	66.457	9	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17740000			28330	6409	18020	18114							-0.012402865482499692
RRMEVYNEF	9	Unmodified	_RRMEVYNEF_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-MSMS	HCT116MG_D190212_S1	1	622.29833984375	2	622.298047	1242.58154	0.62554	0.00038927	-0.2109	-0.00013125	0.41464	0.00025803	622.2978578431338	36.228	0.42456	36.228	36.098	36.522	0					14	7	3	0	0	0	0.004234	1	13504	13504		147.24	109.07	1	50742000			28331	5487	18021	18115	27215	27215					-0.030046150025327734
RRMEVYNEF	9	Unmodified	_RRMEVYNEF_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-MSMS	HCT116MG_D190212_S1	1	415.5351257324219	3	415.201124	1242.58154	-0.023762	-9.8662E-06	-0.57436	-0.00023848	-0.59813	-0.00024834	415.20103019127583	36.228	0.31918	36.228	36.046	36.365	0					11	5	3	0	0	0	0.15273	1	13515	13515		37.075	28.323	1	14278000			28332	5487	18021	18115	27216	27216					-0.030046150025327734
RRMEVYNEF	9	Unmodified	_RRMEVYNEF_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-MSMS	HCT116MG_D190212_S2	2	622.2986450195312	2	622.298047	1242.58154	0.7145	0.00044463	0.28838	0.00017946	1.0029	0.00062409	622.2981912093896	36.274	0.36279	36.146	35.967	36.33	-0.12799					19	6	4	0	0	0	0.0034297	1	13562	13562		159.1	128.46	1	202360000			28333	5487	18021	18115	27217	27217					-0.030046150025327734
RRMEVYNEF	9	Unmodified	_RRMEVYNEF_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-MSMS	HCT116MG_D190212_S2	2	415.20111083984375	3	415.201124	1242.58154	0.17908	7.4355E-05	-0.089513	-3.7166E-05	0.08957	3.7189E-05	415.20122480445286	36.276	0.3111	36.148	35.967	36.278	-0.12799					10	5	3	0	0	0	0.21258	1	13573	13573		30.703	20.176	1	56818000			28334	5487	18021	18115	27218	27218					-0.030046150025327734
RRMEVYNEF	9	Unmodified	_RRMEVYNEF_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000417796.1_1_9:84702254-84702629:-|nuORF	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-MATCH	HCT116MG_D190212_S3	3		2	622.298047	1242.58154	0.19547	0.00012164	-0.14032	-8.732E-05	0.055153	3.4322E-05	622.2980698121356	36.472	0.20819	36.171	36.041	36.249	-0.30113	-0.010773	-0.00022944	NaN	159.1	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2708900			28335	5487	18021	18115							-0.030046150025327734
RRMKKRKMQRA	11	Unmodified	_RRMKKRKMQRA_					0	0	0		ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	MULTI-MSMS	HCT116MG_D190212_S1	1	497.30078125	3	496.966129	1487.87656	0.46664	0.00023191	0.47862	0.00023786	0.94526	0.00046976	496.9663176427822	53.152	1.2349	53.152	52.485	53.72	0					44	23	3	0	0	0	0.74191	1	20268	20268		0.094841	0	1	35219000			28336	5842	18022	18116	27219	27219					0.15213514655306426
RRMRILRRQLR	11	Unmodified	_RRMRILRRQLR_					0	0	0		RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	518.335693359375	3	518.663438	1552.96848	0.46392	0.00024062	0.33505	0.00017378	0.79897	0.0004144	518.663654949286	55.374	0.25516	55.374	55.247	55.503	0					6	4	2	0	0	0	0.36631	1	21246	21246		0	0	1	54705000			28337	18125	18023	18117	27220	27220					0.21411941063979611
RRNDKIIVF	9	Unmodified	_RRNDKIIVF_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	HCT116MG_D190212_S1	1	387.5683898925781	3	387.568135	1159.68258	-0.048341	-1.8736E-05	0.091236	3.536E-05	0.042895	1.6625E-05	387.56808718464015	37.729	0.31298	37.729	37.55	37.863	0					14	5	3	0	0	0	0.061422	1	14090	14090		55.235	29.214	1	51527000			28338	4583	18024	18118	27221	27221					0.10912204762507827
RRNDKIIVF	9	Unmodified	_RRNDKIIVF_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	HCT116MG_D190212_S1	1	580.8484497070312	2	580.848564	1159.68258	0.60618	0.0003521	-0.19188	-0.00011145	0.4143	0.00024064	580.8483309043169	37.734	0.31298	37.734	37.55	37.863	0					11	5	3	0	0	0	0.05892	1	14111	14111		70.332	44.064	1	21153000			28339	4583	18024	18118	27222	27222					0.10912204762507827
RRNDKIIVF	9	Unmodified	_RRNDKIIVF_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	HCT116MG_D190212_S2	2	387.568115234375	3	387.568135	1159.68258	-0.19446	-7.5367E-05	0.23835	9.2377E-05	0.04389	1.701E-05	387.5682064165822	37.77	0.36025	37.666	37.486	37.847	-0.10318					20	6	4	0	0	0	0.041798	1	14169	14169		63.227	39.426	1	398750000			28340	4583	18024	18118	27223	27223					0.10912204762507827
RRNDKIIVF	9	Unmodified	_RRNDKIIVF_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	HCT116MG_D190212_S2	2	580.848876953125	2	580.848564	1159.68258	0.24216	0.00014066	0.19391	0.00011263	0.43606	0.00025329	580.84866587854	37.774	0.36025	37.672	37.487	37.847	-0.10233					17	6	4	0	0	0	0.0059958	1	14171	14171		128.93	85.16	1	235260000			28341	4583	18024	18118	27224	27224					0.10912204762507827
RRNDKIIVF	9	Unmodified	_RRNDKIIVF_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	HCT116MG_D190212_S3	3	387.56787109375	3	387.568135	1159.68258	0.034298	1.3293E-05	-0.053592	-2.0771E-05	-0.019294	-7.4778E-06	387.5680131354511	37.992	0.23367	37.691	37.6	37.833	-0.30137					13	6	3	0	0	0	0.077982	2	14070	14056;14070		49.527	31.154	1	14459000			28342	4583	18024	18118	27225;27226	27226					0.10912204762507827
RRNDKIIVF	9	Unmodified	_RRNDKIIVF_					0	0	0		ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENSG00000163161|ENST00000285398|ERCC3	ENSG00000163161|ENST00000285398|ERCC3	MSMS	HCT116MG_D190212_S3	3	580.849365234375	2	580.848564	1159.68258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.026	1	37.725	37.225	38.225	-0.30137								0	0	0	0.033127	1	14072	14072		79.596	29.663	1				28343	4583	18024	18118	27227	27227					0.10912204762507827
RRNDSIYEA	9	Unmodified	_RRNDSIYEA_					0	0	0		nc|ENSG00000141971|Q96EY5-2|MVB12A;nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A	nc|ENSG00000141971|Q96EY5-2|MVB12A	nc|ENSG00000141971|Q96EY5-2|MVB12A	MULTI-MSMS	HCT116MG_D190212_S1	1	562.2786254882812	2	562.278169	1122.54179	0.32971	0.00018539	-0.026487	-1.4893E-05	0.30322	0.0001705	562.2782845522437	23.392	0.36514	23.392	23.158	23.523	0					11	6	3	0	0	0	0.02327	1	8333	8333		93.166	45.571	1	24306000			28344	3740	18025	18119	27228	27228					-0.014584186815682187
RRNDSIYEA	9	Unmodified	_RRNDSIYEA_					0	0	0		nc|ENSG00000141971|Q96EY5-2|MVB12A;nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A	nc|ENSG00000141971|Q96EY5-2|MVB12A	nc|ENSG00000141971|Q96EY5-2|MVB12A	MULTI-MSMS	HCT116MG_D190212_S1	1	375.1878967285156	3	375.187871	1122.54179	-0.1745	-6.5471E-05	0.11042	4.1429E-05	-0.064082	-2.4043E-05	375.1878868881983	23.392	0.20892	23.392	23.262	23.471	0					5	3	2	0	0	0	0.16306	1	8355	8355		35.612	24.713	1	4964900			28345	3740	18025	18119	27229	27229					-0.014584186815682187
RRNDSIYEA	9	Unmodified	_RRNDSIYEA_					0	0	0		nc|ENSG00000141971|Q96EY5-2|MVB12A;nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A	nc|ENSG00000141971|Q96EY5-2|MVB12A	nc|ENSG00000141971|Q96EY5-2|MVB12A	MULTI-MSMS	HCT116MG_D190212_S2	2	375.18768310546875	3	375.187871	1122.54179	0.010115	3.7949E-06	-0.050044	-1.8776E-05	-0.039929	-1.4981E-05	375.1877561233677	24.021	0.20732	23.637	23.508	23.715	-0.38324					5	3	2	0	0	0	0.090581	1	8596	8596		47.732	29.011	1	18688000			28346	3740	18025	18119	27230	27230					-0.014584186815682187
RRNDSIYEA	9	Unmodified	_RRNDSIYEA_					0	0	0		nc|ENSG00000141971|Q96EY5-2|MVB12A;nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A	nc|ENSG00000141971|Q96EY5-2|MVB12A	nc|ENSG00000141971|Q96EY5-2|MVB12A	MULTI-SECPEP	HCT116MG_D190212_S2	2	562.7388916015625	2	562.278169	1122.54179	0.62408	0.00035091	-0.098655	-5.5471E-05	0.52542	0.00029543	562.2779759968263	24.016	0.3114	23.633	23.456	23.767	-0.38324					14	5	4	0	0	0	0.078812	1	8606	8606		72.968	53.606	1	67789000			28347	3740	18025	18119	27231	27231					-0.014584186815682187
RRNEDCRERRR	11	Unmodified	_RRNEDCRERRR_					0	0	0		nc|ENSG00000128536|Q6ZTQ4-2|CDHR3	nc|ENSG00000128536|Q6ZTQ4-2|CDHR3	nc|ENSG00000128536|Q6ZTQ4-2|CDHR3	MSMS	HCT116MG_D190212_S1	1	773.7115478515625	2	773.398012	1544.78147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.207	1	30.207	29.707	30.707	0								0	0	0	0.95731	1	11070	11070		2.4985	1.427	1				28348	9454	18026	18120	27232	27232					0.03087252717773481
RRNEQIRKL	9	Unmodified	_RRNEQIRKL_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;GOLGA1|p.E108Gfs*21|1|0.29|ENSG00000136935|chr9:124928264-124928264|T/-|frameshift_variant	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MSMS	HCT116MG_D190212_S1	1	405.24884033203125	3	404.914305	1211.72109	0.10276	4.161E-05	0.25595	0.00010364	0.35871	0.00014525	405.24870390501826	17.228	0.20853	17.228	17.098	17.307	0					5	3	2	0	0	0	0.55223	1	5866	5866		9.544	9.544	1	4208700			28349	3447	18027	18121	27233	27233					0.12369510397024897
RRNEQIRKL	9	Unmodified	_RRNEQIRKL_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;GOLGA1|p.E108Gfs*21|1|0.29|ENSG00000136935|chr9:124928264-124928264|T/-|frameshift_variant	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MSMS	HCT116MG_D190212_S2	2	404.91424560546875	3	404.914305	1211.72109	-0.25242	-0.00010221	0.1848	7.483E-05	-0.067616	-2.7379E-05	404.9143215133775	18.188	0.20882	17.832	17.702	17.91	-0.35647					7	3	3	0	0	0	0.012596	1	6238	6238		97.741	50.009	1	21051000			28350	3447	18027	18121	27234	27234					0.12369510397024897
RRNEQIRKL	9	Unmodified	_RRNEQIRKL_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;GOLGA1|p.E108Gfs*21|1|0.29|ENSG00000136935|chr9:124928264-124928264|T/-|frameshift_variant	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MSMS	HCT116MG_D190212_S2	2	606.867919921875	2	606.86782	1211.72109	0.50159	0.0003044	-0.094293	-5.7223E-05	0.4073	0.00024718	606.8676863836387	18.188	0.20882	17.832	17.702	17.91	-0.35647					8	3	3	0	0	0	0.022505	1	6239	6239		93.938	55.763	1	29091000			28351	3447	18027	18121	27235	27235					0.12369510397024897
RRNEQIRKL	9	Unmodified	_RRNEQIRKL_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;GOLGA1|p.E108Gfs*21|1|0.29|ENSG00000136935|chr9:124928264-124928264|T/-|frameshift_variant	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	404.914305	1211.72109	0.10276	4.161E-05	0.25595	0.00010364	0.35871	0.00014525	405.24870390501826	17.228	0.20853	17.228	17.098	17.307	0	0	0	NaN	9.544	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4208700			28352	3447	18027	18121							0.12369510397024897
RRNGKQWLL	9	Unmodified	_RRNGKQWLL_					0	0	0		ENST00000470100.1_1_2:96076623-96078518:+|nuORF;ENST00000463096.5_1_2:97749678-97751586:-|nuORF;FAHD2A|p.G282Rfs*17|1|0.36|ENSG00000115042|chr2:95412717-95412718|-/C|frameshift_variant;FAHD2B|p.P281Qfs*26|5|0.36|ENSG00000144199|chr2:97083988-97083988|G/-|frameshift_variant;FAHD2A|p.P281Qfs*26|2|0.38|ENSG00000115042|chr2:95412718-95412718|C/-|frameshift_variant;ENSG00000144199|ENST00000414820|FAHD2B;ENSG00000115042|ENST00000233379|FAHD2A	ENST00000470100.1_1_2:96076623-96078518:+|nuORF	ENST00000470100.1_1_2:96076623-96078518:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	390.89996337890625	3	390.899996	1169.67816	0.22665	8.8598E-05	-0.23235	-9.0824E-05	-0.005693	-2.2254E-06	390.89985456072736	36.484	0.31099	36.356	36.226	36.537	-0.12799					11	5	3	0	0	0	0.17622	1	13657	13657		43.772	19.983	1	57580000			28353	2441	18028	18122	27236	27236					0.10010740339589574
RRNGKQWLL	9	Unmodified	_RRNGKQWLL_					0	0	0		ENST00000470100.1_1_2:96076623-96078518:+|nuORF;ENST00000463096.5_1_2:97749678-97751586:-|nuORF;FAHD2A|p.G282Rfs*17|1|0.36|ENSG00000115042|chr2:95412717-95412718|-/C|frameshift_variant;FAHD2B|p.P281Qfs*26|5|0.36|ENSG00000144199|chr2:97083988-97083988|G/-|frameshift_variant;FAHD2A|p.P281Qfs*26|2|0.38|ENSG00000115042|chr2:95412718-95412718|C/-|frameshift_variant;ENSG00000144199|ENST00000414820|FAHD2B;ENSG00000115042|ENST00000233379|FAHD2A	ENST00000470100.1_1_2:96076623-96078518:+|nuORF	ENST00000470100.1_1_2:96076623-96078518:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	585.8468627929688	2	585.846356	1169.67816	0.66332	0.0003886	-0.20147	-0.00011803	0.46185	0.00027057	585.8462386343931	36.484	0.2595	36.356	36.226	36.486	-0.12799					7	4	2	0	0	0	0.12421	1	13662	13662		68.081	38.999	1	28911000			28354	2441	18028	18122	27237	27237					0.10010740339589574
RRNPEPLRF	9	Unmodified	_RRNPEPLRF_					0	0	0		nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-3|NDUFC2	nc|ENSG00000151366|O95298-3|NDUFC2	MULTI-MSMS	HCT116MG_D190212_S1	1	592.83642578125	2	592.835988	1183.65742	0.76696	0.00045468	0.12206	7.2359E-05	0.88902	0.00052704	592.8362285085891	30.737	0.36418	30.737	30.503	30.867	0					12	6	2	0	0	0	0.069943	1	11275	11275		70.332	32.181	1	9813900			28355	4112	18029	18123	27238	27238					0.07294149959921015
RRNPEPLRF	9	Unmodified	_RRNPEPLRF_					0	0	0		nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-3|NDUFC2	nc|ENSG00000151366|O95298-3|NDUFC2	MULTI-MSMS	HCT116MG_D190212_S2	2	592.8360595703125	2	592.835988	1183.65742	0.66635	0.00039504	-0.032809	-1.9451E-05	0.63354	0.00037559	592.8358588002587	31.112	0.51661	30.845	30.56	31.077	-0.26704					26	9	4	0	0	0	0.014376	2	11451	11451;11457		121.35	77.488	1	127170000			28356	4112	18029	18123	27239;27240	27239					0.07294149959921015
RRNPEPLRF	9	Unmodified	_RRNPEPLRF_					0	0	0		nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-3|NDUFC2	nc|ENSG00000151366|O95298-3|NDUFC2	MULTI-MSMS	HCT116MG_D190212_S3	3	395.5596618652344	3	395.559751	1183.65742	-0.1164	-4.6043E-05	0.28753	0.00011373	0.17113	6.7692E-05	395.5596962626451	31.142	0.57401	30.881	30.552	31.126	-0.26071					20	8	4	0	0	0	0.07468	1	11379	11379		63.227	43.602	1	10203000			28357	4112	18029	18123	27241	27241					0.07294149959921015
RRNPGVVIY	9	Unmodified	_RRNPGVVIY_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	HCT116MG_D190212_S1	1	537.3142700195312	2	537.314358	1072.61416	0.5441	0.00029235	-0.40103	-0.00021548	0.14307	7.6876E-05	537.3141249196698	31.524	0.26031	31.524	31.388	31.648	0					10	4	3	0	0	0	0.031005	1	11601	11601		85.357	59.957	1	22919000			28358	1083	18030	18124	27242	27242					0.08075960182668496
RRNPGVVIY	9	Unmodified	_RRNPGVVIY_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	HCT116MG_D190212_S1	1	358.5451354980469	3	358.545331	1072.61416	0.017783	6.3761E-06	0.052057	1.8665E-05	0.06984	2.5041E-05	358.54530334306907	31.518	0.26031	31.518	31.388	31.648	0					6	4	2	0	0	0	0.2682	1	11626	11626		24.991	14.917	1	8462800			28359	1083	18030	18124	27243	27243					0.08075960182668496
RRNPGVVIY	9	Unmodified	_RRNPGVVIY_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	HCT116MG_D190212_S2	2	537.314697265625	2	537.314358	1072.61416	0.66659	0.00035817	-0.28229	-0.00015168	0.3843	0.00020649	537.3141227638222	31.789	0.31061	31.541	31.354	31.665	-0.24883					13	5	4	0	0	0	0.065014	1	11759	11759		67.344	41.945	1	196580000			28360	1083	18030	18124	27244	27244					0.08075960182668496
RRNPGVVIY	9	Unmodified	_RRNPGVVIY_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	HCT116MG_D190212_S2	2	358.5453186035156	3	358.545331	1072.61416	0.029913	1.0725E-05	-0.31919	-0.00011445	-0.28928	-0.00010372	358.5452390244964	31.785	0.20644	31.536	31.458	31.665	-0.24883					5	3	2	0	0	0	0.14972	1	11763	11763		36.506	26.432	1	47517000			28361	1083	18030	18124	27245	27245					0.08075960182668496
RRNPGVVIY	9	Unmodified	_RRNPGVVIY_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	HCT116MG_D190212_S3	3	537.3140258789062	2	537.314358	1072.61416	0.38063	0.00020452	-0.19834	-0.00010657	0.18229	9.7947E-05	537.3142703435888	31.882	0.20812	31.612	31.482	31.69	-0.27028					8	3	3	0	0	0	0.13706	1	11680	11680		50.855	29.984	1	12910000			28362	1083	18030	18124	27246	27246					0.08075960182668496
RRNPGVVIY	9	Unmodified	_RRNPGVVIY_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	HCT116MG_D190212_S4	4	537.2850952148438	2	537.314358	1072.61416	0.32782	0.00017615	-0.39681	-0.00021321	-0.068981	-3.7065E-05	537.3144978106221	32.095	0.15578	31.72	31.642	31.797	-0.37529					4	2	2	0	0	0	0.59184	1	11688	11688		11.64	4.9171	1	2267600			28363	1083	18030	18124	27247	27247					0.08075960182668496
RRNPYCRTL	9	Unmodified	_RRNPYCRTL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	HCT116MG_D190212_S2	2	393.54534912109375	3	393.545225	1177.61384	0.17348	6.8271E-05	-0.41416	-0.00016299	-0.24068	-9.4719E-05	393.54510732930925	23.857	0.57172	23.474	23.195	23.767	-0.38324					20	10	3	0	0	0	0.055677	1	8530	8530		65.474	46.112	1	16884000			28364	2197	18031	18125	27248	27248					0.032142171911573314
RRNPYCRTL	9	Unmodified	_RRNPYCRTL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	HCT116MG_D190212_S2	2	589.8142700195312	2	589.814199	1177.61384	0.69227	0.00040831	-0.52043	-0.00030696	0.17183	0.00010135	589.8141389225851	23.888	0.31246	23.505	23.247	23.56	-0.38324					10	5	2	0	0	0	0.17622	1	8532	8532		43.772	17.504	1	10974000			28365	2197	18031	18125	27249	27249					0.032142171911573314
RRNRKNPRRKK	11	Unmodified	_RRNRKNPRRKK_					0	0	0		CHD7|p.D652Tfs*59|2|0.28|ENSG00000171316|chr8:60781281-60781281|A/-|frameshift_variant	CHD7|p.D652Tfs*59|2|0.28|ENSG00000171316|chr8:60781281-60781281|A/-|frameshift_variant	CHD7|p.D652Tfs*59|2|0.28|ENSG00000171316|chr8:60781281-60781281|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	503.6540832519531	3	503.653819	1507.93963	0.51779	0.00026078	-0.040341	-2.0318E-05	0.47744	0.00024047	503.6536370000923	55.764	0.46416	55.578	55.38	55.844	-0.18565					20	8	4	0	0	0	0.74191	1	21521	21521		1.2148	0.76031	1	47849000			28366	431	18032	18126	27250	27250					0.20597539759182837
RRNRPKGRRPR	11	Unmodified	_RRNRPKGRRPR_					0	0	0			REV__ENST00000604760.1_1_15:67834762-67834924:-|nuORF	REV__ENST00000604760.1_1_15:67834762-67834924:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.6344299316406	3	483.634647	1447.88211	0.15071	7.2887E-05	0.22808	0.00011031	0.37879	0.0001832	483.6346737477956	54.577	1.7759	54.281	53.094	54.87	-0.29587					85	33	4	0	0	0	0.74191	1	20907	20907		0.08335	0.08335	1	14165000	+		28367	16764	18033	18127	27251	27251					0.17608697553623642
RRNRPKGRRPR	11	Unmodified	_RRNRPKGRRPR_					0	0	0			REV__ENST00000604760.1_1_15:67834762-67834924:-|nuORF	REV__ENST00000604760.1_1_15:67834762-67834924:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	483.634647	1447.88211	0.13317	6.4404E-05	0.2585	0.00012502	0.39167	0.00018942	483.6347081861175	54.091	3.2903	53.902	51.778	55.068	-0.1894	-0.21478	4.476E-05	NaN	0.08335	141	63	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636810000	+		28368	16764	18033	18127							0.17608697553623642
RRNRPKGRRPR	11	Unmodified	_RRNRPKGRRPR_					0	0	0			REV__ENST00000604760.1_1_15:67834762-67834924:-|nuORF	REV__ENST00000604760.1_1_15:67834762-67834924:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	483.634647	1447.88211	0.15071	7.2887E-05	0.22808	0.00011031	0.37879	0.0001832	483.6346737477956	54.577	1.7759	54.281	53.094	54.87	-0.29587	0.16496	6.2701E-07	NaN	0.08335	85	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14165000	+		28369	16764	18033	18127							0.17608697553623642
RRNRPKGRRPR	11	Unmodified	_RRNRPKGRRPR_					0	0	0			REV__ENST00000604760.1_1_15:67834762-67834924:-|nuORF	REV__ENST00000604760.1_1_15:67834762-67834924:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	483.634647	1447.88211	0.18764	9.075E-05	0.21342	0.00010322	0.40106	0.00019397	483.6346568567429	54.49	1.9795	54.166	53.255	55.234	-0.32349	0.049821	-2.0655E-05	NaN	0.08335	111	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84485000	+		28370	16764	18033	18127							0.17608697553623642
RRNTWLYQA	9	Unmodified	_RRNTWLYQA_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENST00000486955.2_1_10:126686512-126691658:-|nuORF	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	604.320556640625	2	604.320171	1206.62579	0.7228	0.0004368	-0.35636	-0.00021536	0.36644	0.00022145	604.3197835266831	36.846	0.30916	36.731	36.55	36.859	-0.11478					10	5	2	0	0	0	0.071914	1	13794	13794		63.961	21.866	1	59966000			28371	5357	18034	18128	27252	27252					0.03074157205969641
RRNTWLYQA	9	Unmodified	_RRNTWLYQA_					0	0	0		nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENST00000486955.2_1_10:126686512-126691658:-|nuORF	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	403.2157897949219	3	403.215873	1206.62579	-0.064746	-2.6107E-05	0.46474	0.00018739	0.4	0.00016128	403.2157982837973	36.821	0.25734	36.706	36.55	36.808	-0.11478					9	4	3	0	0	0	0.22946	1	13804	13804		29.437	19.287	1	17618000			28372	5357	18034	18128	27253	27253					0.03074157205969641
RRNVSKQRFI	10	Unmodified	_RRNVSKQRFI_					0	0	0			REV__ENST00000441744.1_1_19:54271282-54271726:-|nuORF	REV__ENST00000441744.1_1_19:54271282-54271726:-|nuORF	MSMS	HCT116MG_D190212_S1	1	435.2512512207031	3	435.261705	1302.76329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.123	1	50.123	49.623	50.623	0								0	0	0	0.95381	1	19117	19117		3.8763	1.033	1		+		28373	15651	18035	18129	27254	27254					0.12401485805412449
RRPCCPEGAP	10	Unmodified	_RRPCCPEGAP_					0	0	0		ENST00000531526.5_1_11:45944386-45945084:+|nuORF	ENST00000531526.5_1_11:45944386-45945084:+|nuORF	ENST00000531526.5_1_11:45944386-45945084:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	543.2532958984375	2	543.252585	1084.49062	0.50731	0.0002756	0.97367	0.00052895	1.481	0.00080455	543.2529235036887	21.906	0.46708	21.688	21.322	21.789	-0.21832					12	8	2	0	0	0	0.80458	1	7574	7574		11.64	4.3511	1	1205000			28374	8622	18036	18130	27255	27255					-0.048247822516259475
RRPDVSLP	8	Unmodified	_RRPDVSLP_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-5|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-5|AUTS2	MULTI-MSMS	HCT116MG_D190212_S4	4	470.2723083496094	2	470.272158	938.529764	0.068743	3.2328E-05	0.12947	6.0887E-05	0.19822	9.3215E-05	470.27209490782786	50.377	0.8797	50.018	49.637	50.517	-0.35878					39	16	3	0	0	0	0.85329	1	18641	18641		4.756	0	1	61136000	+		28375	10018	18037	18131	27256	27256					0.05804009365908769
RRPERHLPPA	10	Unmodified	_RRPERHLPPA_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL;ENST00000599594.1_1_19:41188932-41196472:-|nuORF	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-SECPEP	HCT116MG_D190212_S1	1	409.9955749511719	3	410.2389	1227.69487	0.0088215	3.6189E-06	-1.0971	-0.00045006	-1.0882	-0.00044644	410.2384128009245	15.145	0.15635	15.145	15.014	15.171	0					4	2	2	0	0	0	0.31143	1	4966	4966		3.5871	1.0886	1	2869300			28376	1993	18038	18132	27257	27257					0.09013241225557067
RRPGGLNAAAP	11	Unmodified	_RRPGGLNAAAP_					0	0	0		ENST00000536447.6_1_22:42487490-42520529:+|nuORF;ENST00000417327.5_1_22:42487490-42520234:+|nuORF	ENST00000536447.6_1_22:42487490-42520529:+|nuORF	ENST00000536447.6_1_22:42487490-42520529:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	540.8087158203125	2	540.307064	1078.59957	0.30935	0.00016715	-1.1597	-0.0006266	-0.85035	-0.00045945	540.3065039033783	48.31	0.51478	48.31	48.1	48.614	0					16	9	2	0	0	0	0.74191	1	18404	18404		5.7319	5.7319	1	10810000			28377	7764	18039	18133	27258	27258					0.06341888034512522
RRPGGPAP	8	Unmodified	_RRPGGPAP_					0	0	0			REV__ENST00000264156.2_1_2:136630386-136633981:-|nuORF	REV__ENST00000264156.2_1_2:136630386-136633981:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	807.4600830078125	1	807.458396	806.45112	1.0553	0.00085214	-0.010323	-8.3353E-06	1.045	0.00084381	807.4582146528531	46.994	0.6208	46.624	46.277	46.898	-0.37038					24	11	3	0	0	0	0.87576	1	17350	17350		0.79363	0	1	12144000	+		28378	14661	18040	18134	27259	27259					0.04015201851461825
RRPGGPAP	8	Unmodified	_RRPGGPAP_					0	0	0			REV__ENST00000264156.2_1_2:136630386-136633981:-|nuORF	REV__ENST00000264156.2_1_2:136630386-136633981:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	807.458396	806.45112	0.91168	0.00073614	0.35489	0.00028656	1.2666	0.0010227	807.4586364128464	47.023	0.57327	46.709	46.385	46.959	-0.31405	0.042616	0.0001448	NaN	0.79363	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8789300	+		28379	14661	18040	18134							0.04015201851461825
RRPGGPAP	8	Unmodified	_RRPGGPAP_					0	0	0			REV__ENST00000264156.2_1_2:136630386-136633981:-|nuORF	REV__ENST00000264156.2_1_2:136630386-136633981:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	807.458396	806.45112	1.0553	0.00085214	-0.010323	-8.3353E-06	1.045	0.00084381	807.4582146528531	46.994	0.6208	46.624	46.277	46.898	-0.37038	-0.042616	-0.0001501	NaN	0.79363	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12144000	+		28380	14661	18040	18134							0.04015201851461825
RRPGRGAG	8	Unmodified	_RRPGRGAG_					0	0	0			REV__APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	REV__APC2|p.P1892Rfs*104|1|0.27|ENSG00000115266|chr19:1468971-1468971|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	413.7416687011719	2	413.74136	825.468167	-0.13009	-5.3822E-05	-0.078966	-3.2671E-05	-0.20905	-8.6493E-05	413.7413046180814	60.968	1.7592	60.968	60.749	62.508	0					46	33	2	0	0	0	0.8672	1	23760	23760		2.3027	0	1	6289800	+		28381	9962	18041	18135	27260	27260					0.048451224572772844
RRPKYTIYF	9	Unmodified	_RRPKYTIYF_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MSMS	HCT116MG_D190212_S2	2	415.2365417480469	3	415.236385	1242.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.765	1	39.691	39.191	40.191	-0.074829								0	0	0	0.11662	1	14977	14977		53.404	26.181	1				28382	3425	18042	18136	27261	27261					0.07569088905279386
RRPLKLPRG	9	Unmodified	_RRPLKLPRG_					0	0	0			REV__ENST00000451837.5_1_22:24056493-24059477:-|nuORF	REV__ENST00000451837.5_1_22:24056493-24059477:-|nuORF	MSMS	HCT116MG_D190212_S1	1	364.90789794921875	3	364.908603	1091.70398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.929	1	10.929	10.429	11.429	0								0	0	0	0.77025	1	3394	3394		0	0	1		+		28383	15715	18043	18137	27262	27262					0.16179634581862956
RRPLLLLLLLL	11	Unmodified	_RRPLLLLLLLL_					0	0	0		nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1	nc|ENSG00000185896|P11279-2|LAMP1	nc|ENSG00000185896|P11279-2|LAMP1	MSMS	HCT116MG_D190212_S1	1	444.9879150390625	3	444.986631	1331.93806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.139	1	13.139	12.639	13.639	0								0	0	0	0.96208	1	4254	4254		0	0	1				28384	5850	18044	18138	27263	27263					0.28537092897909133
RRPLLLVKE	9	Unmodified	_RRPLLLVKE_					0	0	0		nc|ENSG00000152767|Q9Y4F1-2|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	nc|ENSG00000152767|Q9Y4F1-2|FARP1	MSMS	HCT116MG_D190212_S1	1	375.24871826171875	3	375.248514	1122.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.777	1	33.777	33.277	34.277	0								0	0	0	0.77001	1	12512	12512		0.86438	0.087843	1				28385	9502	18045	18139	27264	27264					0.1672596580199297
RRPNATLIL	9	Unmodified	_RRPNATLIL_					0	0	0		B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant;ENSG00000179913|ENST00000318683|B3GNT3	B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	527.329833984375	2	527.330008	1052.64546	0.13324	7.026E-05	0.11247	5.9311E-05	0.24571	0.00012957	527.3299637472822	39.527	0.25984	39.527	39.398	39.657	0					8	4	2	0	0	0	0.061422	1	14836	14836		69.105	23.405	1	19348000			28386	245	18046	18140	27265	27265					0.1212453321677458
RRPNATLIL	9	Unmodified	_RRPNATLIL_					0	0	0		B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant;ENSG00000179913|ENST00000318683|B3GNT3	B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	B3GNT3|p.W249Gfs*10|1|0.12|ENSG00000179913|chr19:17811744-17811744|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	527.330008	1052.64546	0.37153	0.00019592	-0.42015	-0.00022156	-0.048626	-2.5642E-05	527.3297836717566	39.58	0.25134	39.502	39.379	39.631	-0.077835	-0.012185	-0.00026909	NaN	69.105	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95943000			28387	245	18046	18140							0.1212453321677458
RRPPGPLL	8	Unmodified	_RRPPGPLL_					0	0	0		ENST00000295754.9_1_3:30648085-30686250:+|nuORF	ENST00000295754.9_1_3:30648085-30686250:+|nuORF	ENST00000295754.9_1_3:30648085-30686250:+|nuORF	MSMS	HCT116MG_D190212_S3	3	453.2887268066406	2	453.287611	904.56067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.062	1	61.831	61.331	62.331	-0.23129								0	0	0	0.8837	1	23701	23701		0.69038	0	1				28388	6975	18047	18141	27266	27266					0.10457207470813046
RRPRGFRRK	9	Unmodified	_RRPRGFRRK_					0	0	0		ENSG00000103241|ENST00000262426|FOXF1;ENSG00000137273|ENST00000645481|FOXF2	ENSG00000103241|ENST00000262426|FOXF1	ENSG00000103241|ENST00000262426|FOXF1	MSMS	HCT116MG_D190212_S3	3	410.2591857910156	3	410.258518	1227.75372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.21	1	55.927	55.427	56.427	-0.28367								0	0	0	0.77018	1	21334	21334		0.26902	0	1				28389	1883	18048	18142	27267	27267					0.14895762310538885
RRPRRGKPL	9	Unmodified	_RRPRRGKPL_					0	0	0			REV__ENST00000520859.5_1_8:91017784-91018265:+|nuORF	REV__ENST00000520859.5_1_8:91017784-91018265:+|nuORF	MSMS	HCT116MG_D190212_S3	3	379.2484436035156	3	379.247619	1134.72103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.346	1	53.043	52.543	53.543	-0.30305								0	0	0	0.77018	1	20188	20188		0.26902	0	1		+		28390	16233	18049	18143	27268	27268					0.1590555518769179
RRPRRHQQ	8	Unmodified	_RRPRRHQQ_					0	0	0		ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.2211303710938	2	567.329196	1132.64384	0.33787	0.00019169	0.52787	0.00029948	0.86574	0.00049116	567.3293469008569	49.839	2.2315	49.477	48.386	50.617	-0.36213					112	48	4	0	0	0	0.85987	1	18495	18495		2.3027	0.24298	1	25574000			28391	6984	18050	18144	27269	27269					0.08282336971365112
RRPTKLSKRS	10	Unmodified	_RRPTKLSKRS_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	410.2574462890625	3	410.258072	1227.75239	-0.19767	-8.1094E-05	-0.82584	-0.00033881	-1.0235	-0.0004199	410.2576110714796	49.865	1.1859	49.865	49.492	50.678	0					32	22	2	0	0	0	0.89149	2	18936	18936;19174		0.69767	0.69767	1	32072000	+		28392	13770	18051	18145	27270;27271	27270					0.14762083431128303
RRPWSGRPGR	10	Unmodified	_RRPWSGRPGR_					0	0	0			REV__ENST00000480033.2_1_1:27885247-27930860:-|nuORF	REV__ENST00000480033.2_1_1:27885247-27930860:-|nuORF	MSMS	HCT116MG_D190212_S3	3	408.8974914550781	3	408.898878	1223.67481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.89	1	15.975	15.475	16.475	0.085423								0	0	0	0.96337	1	5233	5233		1.7423	0.52744	1		+		28393	15942	18052	18146	27272	27272					0.07191490285595137
RRQEAIYEM	9	Oxidation (M)	_RRQEAIYEM(Oxidation (M))_		RRQEAIYEM(1)		RRQEAIYEM(60)	0	0	1		ENST00000465087.1_1_10:5494419-5494892:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	606.2963256835938	2	606.295504	1210.57646	0.48152	0.00029194	0.092743	5.623E-05	0.57426	0.00034817	606.2954086238016	22.559	0.36492	22.559	22.376	22.741	0					13	6	3	0	0	0	0.090581	1	7997	7997		60.074	34.675	1	7476700			28394	5308	18053	18147	27273	27273		116			-0.020409188651456134
RRQEAIYEM	9	Unmodified	_RRQEAIYEM_					0	0	0		ENST00000465087.1_1_10:5494419-5494892:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	598.2984008789062	2	598.298047	1194.58154	0.48825	0.00029212	0.11038	6.6038E-05	0.59862	0.00035816	598.2980723637379	32.508	0.3132	32.508	32.326	32.639	0					14	5	4	0	0	0	0.0063854	1	12003	12003		125.53	96.448	1	39322000			28395	5308	18053	18148	27274	27274					-0.007966150025367824
RRQEAIYEM	9	Unmodified	_RRQEAIYEM_					0	0	0		ENST00000465087.1_1_10:5494419-5494892:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	399.201171875	3	399.201124	1194.58154	-0.12995	-5.1876E-05	-0.040172	-1.6037E-05	-0.17012	-6.7913E-05	399.20100403750666	32.508	0.20892	32.508	32.43	32.639	0					8	3	3	0	0	0	0.21258	1	12025	12025		30.703	19.804	1	7055500			28396	5308	18053	18148	27275	27275					-0.007966150025367824
RRQEAIYEM	9	Unmodified	_RRQEAIYEM_					0	0	0		ENST00000465087.1_1_10:5494419-5494892:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	598.298095703125	2	598.298047	1194.58154	0.79604	0.00047627	-0.085095	-5.0912E-05	0.71095	0.00042536	598.2980021992121	32.824	0.36214	32.612	32.43	32.792	-0.21135					16	6	4	0	0	0	0.01386	2	12161	12130;12161		103.82	74.742	1	188130000			28397	5308	18053	18148	27276;27277	27277					-0.007966150025367824
RRQEAIYEM	9	Unmodified	_RRQEAIYEM_					0	0	0		ENST00000465087.1_1_10:5494419-5494892:+|nuORF;nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	ENST00000465087.1_1_10:5494419-5494892:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	399.5353698730469	3	399.201124	1194.58154	0.10032	4.0048E-05	-0.070237	-2.8039E-05	0.030085	1.201E-05	399.20107735605313	32.874	0.20676	32.663	32.482	32.688	-0.21135					6	3	2	0	0	0	0.16306	1	12176	12176		35.612	24.813	1	33394000			28398	5308	18053	18148	27278	27278					-0.007966150025367824
RRQELEQVL	9	Unmodified	_RRQELEQVL_					0	0	0		nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	nc|ENSG00000108604|Q92925-3|SMARCD2	MSMS	HCT116MG_D190212_S2	2	585.83349609375	2	585.833111	1169.65167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.125	1	34.967	34.467	35.467	-0.15834								0	0	0	0.099502	1	13091	13091		56.177	22.075	1				28399	2173	18054	18149	27279	27279					0.07363006657624283
RRQHKLQGRRH	11	Unmodified	_RRQHKLQGRRH_					0	0	0		ENST00000361673.3_1_18:56246097-56246205:-|nuORF	ENST00000361673.3_1_18:56246097-56246205:-|nuORF	ENST00000361673.3_1_18:56246097-56246205:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	736.935546875	2	736.432516	1470.85048	0.89235	0.00065715	0.17459	0.00012857	1.0669	0.00078573	736.4323014341959	53.17	2.2041	53.17	52.383	54.587	0					82	42	3	0	0	0	0.74191	1	20516	20516		0.35063	0	1	54825000			28400	7361	18055	18150	27280	27280					0.13388704799695006
RRQHRLRAD	9	Unmodified	_RRQHRLRAD_					0	0	0			REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	MSMS	HCT116MG_D190212_S2	2	403.232666015625	3	403.234149	1206.68062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.143	1	64.027	63.527	64.527	-0.11585								0	0	0	0.77019	1	24841	24841		0.20686	0.047535	1		+		28401	14695	18056	18151	27281	27281					0.08554588797278484
RRQHVWLRHLY	11	Unmodified	_RRQHVWLRHLY_					0	0	0		ENST00000434140.5_2_3:46717393-46723043:-|nuORF	ENST00000434140.5_2_3:46717393-46723043:-|nuORF	ENST00000434140.5_2_3:46717393-46723043:-|nuORF	MSMS	HCT116MG_D190212_S2	2	782.4415893554688	2	782.442018	1562.86948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.622	1	39.545	39.045	40.045	-0.077835								0	0	0	0.95925	1	14919	14919		1.4819	0	1				28402	7872	18057	18152	27282	27282					0.11056241370738462
RRQLPALP	8	Unmodified	_RRQLPALP_					0	0	0		ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	MSMS	HCT116MG_D190212_S4	4	475.8003234863281	2	475.798343	949.582134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.194	1	48.829	48.329	49.329	-0.365								0	0	0	0.8837	1	18239	18239		5.7604	1.0044	1				28403	8310	18058	18153	27283	27283					0.10532592499498605
RRQRRIHVQRA	11	Unmodified	_RRQRRIHVQRA_					0	0	0		ENST00000396426.7_1_22:42373013-42377694:+|nuORF	ENST00000396426.7_1_22:42373013-42377694:+|nuORF	ENST00000396426.7_1_22:42373013-42377694:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	738.4491577148438	2	738.448166	1474.88178	0.9013	0.00066556	0.053541	3.9537E-05	0.95484	0.0007051	738.4481181912531	53.848	2.1963	53.848	53.153	55.349	0					169	42	5	0	0	0	0.74191	2	20885	20885;21215		0.30703	0	1	3168399999.9999995			28404	7653	18059	18154	27284;27285	27284					0.1633327783376899
RRQRRQGML	9	Unmodified	_RRQRRQGML_					0	0	0		ENST00000244040.3_1_20:56884772-56884994:+|nuORF	ENST00000244040.3_1_20:56884772-56884994:+|nuORF	ENST00000244040.3_1_20:56884772-56884994:+|nuORF	MSMS	HCT116MG_D190212_S1	1	600.8482666015625	2	600.846365	1199.67818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.061	1	11.061	10.561	11.561	0								0	0	0	0.77008	1	3448	3448		0.6015	0	1				28405	6784	18060	18155	27286	27286					0.08632417067951792
RRQSQQLPE	9	Unmodified	_RRQSQQLPE_					0	0	0		ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	MSMS	HCT116MG_D190212_S4	4	381.2068786621094	3	381.207266	1140.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.946	1	61.691	61.191	62.191	-0.25457								0	0	0	0.76995	1	23383	23383		1.0715	0	1				28406	4451	18061	18156	27287	27287					0.035292629637069695
RRQTRRRRW	9	Unmodified	_RRQTRRRRW_					0	0	0			REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF	REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	685.9085693359375	2	685.908676	1369.8028	0.80795	0.00055418	0.056816	3.8971E-05	0.86476	0.00059315	685.9085834048054	52.768	3.4932	52.768	51.704	55.197	0					221	67	5	0	0	0	0.75193	1	20594	20594		1.6526	0.32309	1	1729399999.9999998	+		28407	15686	18062	18157	27288	27288					0.1326905059947876
RRQYLHRRQPW	11	Unmodified	_RRQYLHRRQPW_					0	0	0			REV__LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant	REV__LAD1|p.G152Afs*67|1|0.17|ENSG00000159166|chr1:201386906-201386906|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	798.4397583007812	2	798.442549	1594.87055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.788	1	53.599	53.099	54.099	-0.1894								0	0	0	0.95954	1	20693	20693		1.3295	0.36726	1		+		28408	16965	18063	18158	27289	27289					0.09690455739632853
RRQYWHWLRWC	11	Unmodified	_RRQYWHWLRWC_					0	0	0		ENST00000513055.1_1_5:92921088-92921313:-|nuORF	ENST00000513055.1_1_5:92921088-92921313:-|nuORF	ENST00000513055.1_1_5:92921088-92921313:-|nuORF	MSMS	HCT116MG_D190212_S3	3	845.42041015625	2	845.420228	1688.8259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.22	1	55.936	55.436	56.436	-0.28367								0	0	0	0.96208	1	21338	21338		0	0	1				28409	8509	18064	18159	27290	27290					0.009043086019346447
RRRARWHWRHL	11	Unmodified	_RRRARWHWRHL_					0	0	0		ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MSMS	HCT116MG_D190212_S1	1	815.4645385742188	2	815.46415	1628.91375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.253	1	45.253	44.753	45.753	0								0	0	0	0.96208	1	17141	17141		0	0	1				28410	9117	18065	18160	27291	27291					0.12444690307575001
RRRCIQNLLNI	11	Unmodified	_RRRCIQNLLNI_					0	0	0		ENST00000498351.1_1_21:38792656-38802624:+|nuORF	ENST00000498351.1_1_21:38792656-38802624:+|nuORF	ENST00000498351.1_1_21:38792656-38802624:+|nuORF	MSMS	HCT116MG_D190212_S2	2	699.9098510742188	2	699.909162	1397.80377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.219	1	53.03	52.53	53.53	-0.18922								0	0	0	0.95196	1	20461	20461		5.2969	0	1				28411	8409	18066	18161	27292	27292					0.12078084133531775
RRREAHWRRLQ	11	Unmodified	_RRREAHWRRLQ_					0	0	0			REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	521.962646484375	3	521.966174	1562.87669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.819	1	37.436	36.936	37.936	-0.38283								0	0	0	0.96192	1	13856	13856		0.08335	0	1		+		28412	11244	18067	18162	27293	27293					0.11776973971154803
RRRELRRLRKE	11	Unmodified	_RRRELRRLRKE_					0	0	0			REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	784.4906005859375	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.192	1	50.02	49.52	50.52	-0.1719								0	0	0	0.96208	1	19231	19231		0	0	1		+		28413	10080	18068	18163	27294	27294					0.20470389210800022
RRRELRRLRKE	11	Unmodified	_RRRELRRLRKE_					0	0	0			REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	784.4908447265625	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.917	1	46.546	46.046	47.046	-0.37068								0	0	0	0.96208	1	17337	17337		0	0	1		+		28414	10080	18068	18163	27295	27295					0.20470389210800022
RRRELRRLRKE	11	Unmodified	_RRRELRRLRKE_					0	0	0			REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	784.4906005859375	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.697	1	53.368	52.868	53.868	-0.32923								0	0	0	0.96208	1	20056	20056		0	0	1		+		28415	10080	18068	18163	27296	27296					0.20470389210800022
RRRFKKRQNIY	11	Unmodified	_RRRFKKRQNIY_					0	0	0			REV__nc|ENSG00000106484|Q5EB52-3|MEST	REV__nc|ENSG00000106484|Q5EB52-3|MEST	MSMS	HCT116MG_D190212_S1	1	782.9658203125	2	782.9684	1563.92225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.81	1	42.81	42.31	43.31	0								0	0	0	0.95954	1	16157	16157		1.3295	1.0605	1		+		28416	11300	18069	18164	27297	27297					0.16284199433584945
RRRGRPKRA	9	Unmodified	_RRRGRPKRA_					0	0	0			REV__ENSG00000167702|ENST00000645548|KIFC2	REV__ENSG00000167702|ENST00000645548|KIFC2	MSMS	HCT116MG_D190212_S1	1	577.1268920898438	2	576.868489	1151.72242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.917	1	10.917	10.417	11.417	0								0	0	0	0.77025	1	3390	3390		0	0	1		+		28417	13162	18070	18165	27298	27298					0.15263189276470257
RRRGRWQRR	9	Unmodified	_RRRGRWQRR_					0	0	0			REV__ENST00000491143.2_1_18:55102944-55103118:+|nuORF	REV__ENST00000491143.2_1_18:55102944-55103118:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	442.9330139160156	3	442.932805	1325.77659	0.045808	2.029E-05	0.1764	7.8132E-05	0.2222	9.8421E-05	442.932828576789	51.874	1.9577	51.874	51.349	53.307	0					135	37	5	0	0	0	0.74917	1	19961	19961		0.96228	0.96228	1	166820000	+		28418	16036	18071	18166	27299	27299					0.12672781428000235
RRRGRWQRR	9	Unmodified	_RRRGRWQRR_					0	0	0			REV__ENST00000491143.2_1_18:55102944-55103118:+|nuORF	REV__ENST00000491143.2_1_18:55102944-55103118:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	663.896240234375	2	663.895569	1325.77659	0.89111	0.0005916	-0.019145	-1.271E-05	0.87196	0.00057889	663.895503008309	53.112	2.0893	52.809	51.989	54.079	-0.30305					80	39	3	0	0	0	0.74917	1	19940	19940		1.8442	1.8442	1	10236000	+		28419	16036	18071	18166	27300	27300					0.12672781428000235
RRRHAFRRQA	10	Unmodified	_RRRHAFRRQA_					0	0	0		SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant;nc|ENSG00000022567|Q5BKX6|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4;nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4	SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant	SLC45A4|p.K543Rfs*46|1|0.44|ENSG00000022567|chr8:141218014-141218014|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	677.3958740234375	2	677.395402	1352.77625	0.79751	0.00054023	-0.079769	-5.4035E-05	0.71774	0.00048619	677.3951732544979	52.768	3.2405	52.768	51.549	54.79	0					154	62	4	0	0	0	0.87945	1	20510	20510		3.5965	3.5965	1	770460000			28420	945	18072	18167	27301	27301					0.11397361708168319
RRRHHTLK	8	Unmodified	_RRRHHTLK_					0	0	0		ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	MSMS	HCT116MG_D190212_S3	3	368.5600280761719	3	368.560085	1102.65843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.992	1	13.061	12.561	13.561	0.069158								0	0	0	0.8837	1	4093	4093		0.40072	0	1				28421	5776	18073	18168	27302	27302					0.11120409119484975
RRRHLFPKKRK	11	Unmodified	_RRRHLFPKKRK_					0	0	0			REV__KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant	REV__KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	761.4893188476562	2	761.489302	1520.96405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.643	1	61.643	61.143	62.143	0								0	0	0	0.96208	1	23789	23789		0	0	1		+		28422	10898	18074	18169	27303	27303					0.22440799912715192
RRRHREFVW	9	Unmodified	_RRRHREFVW_					0	0	0		SNX11|p.Y60H|1|0.28|ENSG00000002919|chr17:48113349-48113349|T/C|missense_variant	SNX11|p.Y60H|1|0.28|ENSG00000002919|chr17:48113349-48113349|T/C|missense_variant	SNX11|p.Y60H|1|0.28|ENSG00000002919|chr17:48113349-48113349|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	447.9165344238281	3	447.918161	1340.73265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.121	1	15.958	15.458	16.458	-0.16364								0	0	0	0.76995	1	5252	5252		1.0715	0.14593	1				28423	18181	18075	18170	27304	27304					0.07591752211010316
RRRIKSLLPKL	11	Unmodified	_RRRIKSLLPKL_					0	0	0		CFI|p.N549Kfs*19|1|0.2|ENSG00000205403|chr4:109740998-109740999|-/T|frameshift_variant;ENSG00000205403|ENST00000394634|CFI	CFI|p.N549Kfs*19|1|0.2|ENSG00000205403|chr4:109740998-109740999|-/T|frameshift_variant	CFI|p.N549Kfs*19|1|0.2|ENSG00000205403|chr4:109740998-109740999|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	690.4703369140625	2	690.469712	1378.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.979	1	60.719	60.219	61.219	-0.2602								0	0	0	0.96149	1	22992	22992		0.30703	0.30703	1				28424	420	18076	18171	27305	27305					0.25056654838499526
RRRIREPVKPL	11	Unmodified	_RRRIREPVKPL_					0	0	0			REV__ENSG00000135973|ENST00000258456|GPR45	REV__ENSG00000135973|ENST00000258456|GPR45	MSMS	HCT116MG_D190212_S3	3	710.0594482421875	2	710.454594	1418.89463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.76	1	48.444	47.944	48.944	-0.31596								0	0	0	0.9598	1	18348	18348		1.1933	0.79263	1		+		28425	12113	18077	18172	27306	27306					0.20194296173303883
RRRITKLILV	10	Unmodified	_RRRITKLILV_					0	0	0			REV__ENSG00000186086|ENST00000495380|NBPF6	REV__ENSG00000186086|ENST00000495380|NBPF6	MSMS	HCT116MG_D190212_S4	4	423.2748718261719	3	423.294346	1266.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.874	1	56.574	56.074	57.074	-0.3004								0	0	0	0.96911	1	21332	21332		0.15932	0	1		+		28426	13874	18078	18173	27307	27307					0.23845294401394312
RRRKHREKRRR	11	Unmodified	_RRRKHREKRRR_					0	0	0		CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant	CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant	CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	817.51123046875	2	817.512163	1633.00977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.499	1	49.499	48.999	49.999	0								0	0	0	0.96208	1	18863	18863		0	0	1				28427	425	18079	18174	27308	27308					0.2185883814763656
RRRKHVLK	8	Unmodified	_RRRKHVLK_					0	0	0		DCAF15|p.E34K|1|0.31|ENSG00000132017|chr19:13952612-13952612|G/A|missense_variant	DCAF15|p.E34K|1|0.31|ENSG00000132017|chr19:13952612-13952612|G/A|missense_variant	DCAF15|p.E34K|1|0.31|ENSG00000132017|chr19:13952612-13952612|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	365.1767272949219	3	364.912348	1091.71521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.746	1	21.764	21.264	22.264	0.018446								0	0	0	0.8837	1	7593	7593		1.4819	0	1				28428	644	18080	18175	27309	27309					0.17302456676020483
RRRKKLQNLH	10	Unmodified	_RRRKKLQNLH_					0	0	0			REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	REV__nc|ENSG00000043514|Q9H3H1-6|TRIT1	MULTI-MSMS	HCT116MG_D190212_S1	1	675.4806518554688	2	674.923461	1347.83237	0.63785	0.0004305	1.0511	0.00070944	1.689	0.0011399	674.9239097892394	60.883	2.0171	60.883	60.387	62.404	0					62	38	2	0	0	0	0.89272	1	23700	23700		0.40072	0.050084	1	21415000	+		28429	10597	18081	18176	27310	27310					0.1723656982499051
RRRKKRRAA	9	Unmodified	_RRRKKRRAA_					0	0	0			REV__nc|ENSG00000048649|Q96T23-3|RSF1	REV__nc|ENSG00000048649|Q96T23-3|RSF1	MSMS	HCT116MG_D190212_S4	4	599.3980712890625	2	599.397413	1196.78027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.898	1	58.615	58.115	59.115	-0.28305								0	0	0	0.77025	1	22150	22150		0	0	1		+		28430	10610	18082	18177	27311	27311					0.18975451201890792
RRRKMRRRRSL	11	Unmodified	_RRRKMRRRRSL_					0	0	0		ENST00000525722.1_1_11:812627-812858:+|nuORF	ENST00000525722.1_1_11:812627-812858:+|nuORF	ENST00000525722.1_1_11:812627-812858:+|nuORF	MSMS	HCT116MG_D190212_S1	1	785.9937744140625	2	785.992217	1569.96988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.305	1	62.305	61.805	62.805	0								0	0	0	0.96208	1	24056	24056		0	0	1				28431	8582	18083	18178	27312	27312					0.20769575152735342
RRRKQPDP	8	Unmodified	_RRRKQPDP_					0	0	0		ENST00000477957.1_1_1:229743577-229761715:-|nuORF	ENST00000477957.1_1_1:229743577-229761715:-|nuORF	ENST00000477957.1_1_1:229743577-229761715:-|nuORF	MSMS	HCT116MG_D190212_S3	3	351.541259765625	3	351.540579	1051.59991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.022	1	29.786	29.286	30.286	-0.23655								0	0	0	0.8837	1	10927	10927		3.9444	0.94915	1				28432	8214	18084	18179	27313	27313					0.07617307754367175
RRRKRCLRLGL	11	Unmodified	_RRRKRCLRLGL_					0	0	0			REV__ENST00000445328.6_1_12:120960124-120966784:-|nuORF	REV__ENST00000445328.6_1_12:120960124-120966784:-|nuORF	MSMS	HCT116MG_D190212_S1	1	476.3067626953125	3	476.305251	1425.89392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.646	1	39.646	39.146	40.146	0								0	0	0	0.95954	1	14878	14878		0.45452	0.046251	1		+		28433	15668	18085	18180	27314	27314					0.19801178252600948
RRRKRFKVLKS	11	Unmodified	_RRRKRFKVLKS_					0	0	0		ENSG00000171956|ENST00000396057|FOXB1	ENSG00000171956|ENST00000396057|FOXB1	ENSG00000171956|ENST00000396057|FOXB1	MSMS	HCT116MG_D190212_S1	1	737.0891723632812	2	737.483686	1472.95282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.159	1	39.159	38.659	39.659	0								0	0	0	0.96208	1	14682	14682		0	0	1				28434	5227	18086	18181	27315	27315					0.23525977818576393
RRRKRNQKQRR	11	Unmodified	_RRRKRNQKQRR_					0	0	0		nc|ENSG00000164334|A1A519-4|FAM170A	nc|ENSG00000164334|A1A519-4|FAM170A	nc|ENSG00000164334|A1A519-4|FAM170A	MULTI-MSMS	HCT116MG_D190212_S2	2	528.3179321289062	3	527.996356	1580.96724	0.52043	0.00027479	0.33331	0.00017599	0.85375	0.00045078	528.3301918238608	56.132	0.35812	55.95	55.694	56.052	-0.18261					12	6	3	0	0	0	0.74191	1	21597	21597		0.45452	0	1	7107800			28435	9525	18087	18182	27316	27316					0.1999944301942378
RRRKRQPCL	9	Unmodified	_RRRKRQPCL_					0	0	0			REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF	REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MSMS	HCT116MG_D190212_S1	1	606.8634033203125	2	606.864557	1211.71456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.063	1	11.063	10.563	11.563	0								0	0	0	0.77025	1	3449	3449		0	0	1		+		28436	15665	18088	18183	27317	27317					0.11717293964693454
RRRKRRKRKKK	11	Unmodified	_RRRKRRKRKKK_					0	0	0		PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant;PHF23|p.D230Ifs*37|1|0.2|ENSG00000040633|chr17:7236239-7236239|C/-|frameshift_variant	PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant	PHF23|p.S243Vfs*24|2|0.23|ENSG00000040633|chr17:7236201-7236201|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	798.5529174804688	2	798.553299	1595.09205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.428	1	43.428	42.928	43.928	0								0	0	0	0.96208	1	16406	16406		0	0	1				28437	9747	18089	18184	27318	27318					0.31830360226581433
RRRKRRKRRRF	11	Unmodified	_RRRKRRKRRRF_					0	0	0			REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF	REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF	MSMS	HCT116MG_D190212_S1	1	836.0436401367188	2	836.046173	1670.07779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.186	1	29.186	28.686	29.686	0								0	0	0	0.96208	1	10658	10658		0	0	1		+		28438	16017	18090	18185	27319	27319					0.2695570779831087
RRRKVTKKRRR	11	Unmodified	_RRRKVTKKRRR_					0	0	0			REV__ENST00000297788.8_2_7:128455827-128457854:+|nuORF	REV__ENST00000297788.8_2_7:128455827-128457854:+|nuORF	MSMS	HCT116MG_D190212_S1	1	770.515869140625	2	770.516383	1539.01821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.659	1	41.659	41.159	42.159	0								0	0	0	0.96208	1	15692	15692		0	0	1		+		28439	14766	18091	18186	27320	27320					0.2702639206427193
RRRLLKFIP	9	Unmodified	_RRRLLKFIP_					0	0	0		nc|ENSG00000161835|Q7Z6J2-2|TAMALIN;ENSG00000161835|ENST00000293662|TAMALIN	nc|ENSG00000161835|Q7Z6J2-2|TAMALIN	nc|ENSG00000161835|Q7Z6J2-2|TAMALIN	MSMS	HCT116MG_D190212_S3	3	400.26885986328125	3	400.26802	1197.78223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.431	1	61.193	60.693	61.693	-0.2387								0	0	0	0.76995	1	23446	23446		1.0715	0.80244	1				28440	4498	18092	18187	27321	27321					0.1912506716714688
RRRLRRCLRLP	11	Unmodified	_RRRLRRCLRLP_					0	0	0		ENST00000545417.5_1_1:44173220-44201909:+|nuORF	ENST00000545417.5_1_1:44173220-44201909:+|nuORF	ENST00000545417.5_1_1:44173220-44201909:+|nuORF	MSMS	HCT116MG_D190212_S1	1	498.9583435058594	3	498.9844	1493.93137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.771	1	12.771	12.271	13.271	0								0	0	0	0.96208	1	4117	4117		0	0	1				28441	8718	18093	18188	27322	27322					0.20416269518227637
RRRLRRLLLGR	11	Unmodified	_RRRLRRLLLGR_					0	0	0			REV__ENST00000419007.5_1_3:50313561-50314134:+|nuORF	REV__ENST00000419007.5_1_3:50313561-50314134:+|nuORF	MSMS	HCT116MG_D190212_S1	1	732.9232788085938	2	732.994752	1463.97495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.259	1	40.259	39.759	40.759	0								0	0	0	0.96208	1	15126	15126		0	0	1		+		28442	10527	18094	18189	27323	27323					0.26152202287016735
RRRLRRRHRHL	11	Unmodified	_RRRLRRRHRHL_					0	0	0			REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	538.2780151367188	3	538.008708	1611.00429	0.39099	0.00021035	4.1149	0.0022138	4.5059	0.0024242	538.0103308068134	57.314	0.20791	57.314	57.204	57.412	0					5	3	2	0	0	0	0.36631	1	22067	22067		0	0	1	3223600	+		28443	11406	18095	18190	27324	27324					0.22323159355869393
RRRLSRPWSA	10	Unmodified	_RRRLSRPWSA_					0	0	0			REV__ENST00000510241.5_2_5:139943874-139944132:-|nuORF	REV__ENST00000510241.5_2_5:139943874-139944132:-|nuORF	MSMS	HCT116MG_D190212_S4	4	428.9179992675781	3	428.91805	1283.73232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.05	1	15.887	15.387	16.387	-0.16364								0	0	0	0.96804	1	5224	5224		0.69767	0	1		+		28444	16173	18096	18191	27325	27325					0.10180332491177069
RRRLWRWWKLQ	11	Unmodified	_RRRLWRWWKLQ_					0	0	0		chr12:54283225-54283827|478|34.15|0.0|21.7|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|478|34.15|0.0|21.7|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|478|34.15|0.0|21.7|+|1|HNRNPA1,HNRNPA1|2	MSMS	HCT116MG_D190212_S1	1	842.4956665039062	2	842.494585	1682.97462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.013	1	49.013	48.513	49.513	0								0	0	0	0.96208	1	18665	18665		0	0	1				28445	445	18097	18192	27326	27326					0.1604478256715538
RRRLWRWWWKL	11	Unmodified	_RRRLWRWWWKL_					0	0	0		chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	MSMS	HCT116MG_D190212_S1	1	871.6478881835938	2	871.504952	1740.99535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.227	1	35.227	34.727	35.727	0								0	0	0	0.96208	1	13097	13097		0	0	1				28446	446	18098	18193	27327	27327					0.15449372946795847
RRRMRRTRRRL	11	Unmodified	_RRRMRRTRRRL_					0	0	0		ENST00000423021.2_1_9:5112335-5112581:+|nuORF	ENST00000423021.2_1_9:5112335-5112581:+|nuORF	ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	807.0029296875	2	807.003116	1611.99168	0.76512	0.00061745	0.011334	9.1468E-06	0.77645	0.0006266	807.5045049633909	60.916	1.8093	60.916	60.387	62.196	0					77	34	3	0	0	0	0.74191	3	23402	23402;23654;23913		0	0	1	38472000			28447	7796	18099	18194	27328;27329;27330	27328					0.21016379901311666
RRRMYAKKEMR	11	Unmodified	_RRRMYAKKEMR_					0	0	0			REV__CUX1|p.K1211R|1|0.11|ENSG00000257923|chr7:102239329-102239329|A/G|missense_variant	REV__CUX1|p.K1211R|1|0.11|ENSG00000257923|chr7:102239329-102239329|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	762.9188232421875	2	762.921746	1523.82894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.716	1	30.456	29.956	30.956	-0.26071								0	0	0	0.95196	1	11195	11195		5.2969	2.3016	1		+		28448	10313	18100	18195	27331	27331					0.08797815664433983
RRRNPRRFQYR	11	Unmodified	_RRRNPRRFQYR_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;ENST00000502438.6_1_16:1449373-1453182:-|nuORF;ENST00000509981.1_1_16:1447085-1449499:-|nuORF	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	MSMS	HCT116MG_D190212_S2	2	802.9590454101562	2	802.958898	1603.90324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.001	1	38.917	38.417	39.417	-0.084618								0	0	0	0.96208	1	14665	14665		0	0	1				28449	9373	18101	18196	27332	27332					0.12544662862501355
RRRPLHKRRRH	11	Unmodified	_RRRPLHKRRRH_					0	0	0			REV__sp|P16722|UL17_HCMVAUncharacterizedproteinUL17OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL17PE=4SV=1	REV__sp|P16722|UL17_HCMVAUncharacterizedproteinUL17OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL17PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	784.4904174804688	2	784.490699	1566.96685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.986	1	47.853	47.353	48.353	-0.13281								0	0	0	0.9598	1	18319	18319		1.1933	1.1933	1		+		28450	17565	18102	18197	27333	27333					0.2060406809023334
RRRPLHKRRRH	11	Unmodified	_RRRPLHKRRRH_					0	0	0			REV__sp|P16722|UL17_HCMVAUncharacterizedproteinUL17OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL17PE=4SV=1	REV__sp|P16722|UL17_HCMVAUncharacterizedproteinUL17OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL17PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	784.6297607421875	2	784.490699	1566.96685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.132	1	53.943	53.443	54.443	-0.1894								0	0	0	0.95954	1	20833	20833		1.3295	0	1		+		28451	17565	18102	18197	27334	27334					0.2060406809023334
RRRPLHKRRRH	11	Unmodified	_RRRPLHKRRRH_					0	0	0			REV__sp|P16722|UL17_HCMVAUncharacterizedproteinUL17OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL17PE=4SV=1	REV__sp|P16722|UL17_HCMVAUncharacterizedproteinUL17OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL17PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	784.489990234375	2	784.490699	1566.96685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.906	1	49.591	49.091	50.091	-0.31525								0	0	0	0.96149	1	18805	18805		0.30703	0.30703	1		+		28452	17565	18102	18197	27335	27335					0.2060406809023334
RRRPPQPIQQP	11	Unmodified	_RRRPPQPIQQP_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ENST00000482945.5_1_15:58889748-58902828:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	458.6033020019531	3	458.26886	1371.78475	0.0096709	4.4319E-06	-0.031399	-1.4389E-05	-0.021728	-9.9572E-06	458.60312111806763	19.649	0.41738	19.649	19.391	19.809	0					12	7	2	0	0	0	0.72244	1	6877	6877		13.519	6.4816	1	2503100			28453	3510	18103	18198	27336	27336					0.11372870834134119
RRRPRGPASL	10	Unmodified	_RRRPRGPASL_					0	0	0		ENST00000497343.5_1_3:160473400-160474084:+|nuORF	ENST00000497343.5_1_3:160473400-160474084:+|nuORF	ENST00000497343.5_1_3:160473400-160474084:+|nuORF	MSMS	HCT116MG_D190212_S1	1	389.2396240234375	3	389.239012	1164.69521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.099	1	28.099	27.599	28.599	0								0	0	0	0.92272	1	10223	10223		6.1918	0	1				28454	8400	18104	18199	27337	27337					0.11944660945414398
RRRPRLERRL	10	Unmodified	_RRRPRLERRL_					0	0	0		ENST00000557385.1_1_X:119384635-119386530:+|nuORF;ENST00000326624.2_1_X:119384635-119387278:+|nuORF	ENST00000557385.1_1_X:119384635-119386530:+|nuORF	ENST00000557385.1_1_X:119384635-119386530:+|nuORF	MSMS	HCT116MG_D190212_S2	2	704.4498901367188	2	704.447634	1406.88072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.815	1	59.655	59.155	60.155	-0.16012								0	0	0	0.9696	1	23137	23137		0.35063	0	1				28455	7135	18105	18200	27338	27338					0.19355063464877276
RRRPRLERRLK	11	Unmodified	_RRRPRLERRLK_					0	0	0		ENST00000557385.1_1_X:119384635-119386530:+|nuORF;ENST00000326624.2_1_X:119384635-119387278:+|nuORF	ENST00000557385.1_1_X:119384635-119386530:+|nuORF	ENST00000557385.1_1_X:119384635-119386530:+|nuORF	MSMS	HCT116MG_D190212_S1	1	768.49609375	2	768.495116	1534.97568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.214	1	52.214	51.714	52.714	0								0	0	0	0.96208	1	19965	19965		0	0	1				28456	7135	18106	18201	27339	27339					0.2295899693604042
RRRPRPRRAPV	11	Unmodified	_RRRPRPRRAPV_					0	0	0		ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	MSMS	HCT116MG_D190212_S4	4	708.945556640625	2	708.947802	1415.88105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.579	1	55.267	54.767	55.767	-0.312								0	0	0	0.95925	1	20815	20815		1.4819	0.28856	1				28457	3235	18107	18202	27340	27340					0.18974483184729252
RRRQRMLWRMF	11	Unmodified	_RRRQRMLWRMF_					0	0	0		sp|F7V998|U150A_HCMVMUncharacterizedproteinUL150AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150APE=4SV=1	sp|F7V998|U150A_HCMVMUncharacterizedproteinUL150AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150APE=4SV=1	sp|F7V998|U150A_HCMVMUncharacterizedproteinUL150AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150APE=4SV=1	MSMS	HCT116MG_D190212_S1	1	545.864501953125	3	545.969762	1634.88746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.967	1	13.967	13.467	14.467	0								0	0	0	0.96208	1	4549	4549		0	0	1				28458	18205	18108	18203	27341	27341					0.09540917029562479
RRRQRMLWRMF	11	Unmodified	_RRRQRMLWRMF_					0	0	0		sp|F7V998|U150A_HCMVMUncharacterizedproteinUL150AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150APE=4SV=1	sp|F7V998|U150A_HCMVMUncharacterizedproteinUL150AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150APE=4SV=1	sp|F7V998|U150A_HCMVMUncharacterizedproteinUL150AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150APE=4SV=1	MSMS	HCT116MG_D190212_S1	1	545.970703125	3	545.969762	1634.88746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.993	1	13.993	13.493	14.493	0								0	0	0	0.96208	1	4558	4558		0	0	1				28459	18205	18108	18203	27342	27342					0.09540917029562479
RRRQRQPH	8	Unmodified	_RRRQRQPH_					0	0	0			REV__ENST00000338745.10_3_3:18466531-18466693:-|nuORF	REV__ENST00000338745.10_3_3:18466531-18466693:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.3292236328125	2	567.329196	1132.64384	0.33787	0.00019169	0.52787	0.00029948	0.86574	0.00049116	567.3293469008569	49.839	2.2315	49.477	48.386	50.617	-0.36213					112	48	4	0	0	0	0.8698	1	18573	18573		0	0	1	25574000	+		28460	14959	18109	18204	27343	27343					0.08282336971365112
RRRQRRRFSP	10	Unmodified	_RRRQRRRFSP_					0	0	0		ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	473.2650451660156	3	472.283615	1413.82901	0.19251	9.0918E-05	0.18311	8.6478E-05	0.37561	0.0001774	472.2836221562667	51.945	0.7247	51.945	51.451	52.176	0					36	13	4	0	0	0	0.8938	1	19890	19890		0.13989	0.04505	1	89714000			28461	7448	18110	18205	27344	27344					0.13865319770957285
RRRRAGWGRR	10	Unmodified	_RRRRAGWGRR_					0	0	0		ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	443.2669372558594	3	442.932805	1325.77659	0.31326	0.00013875	-0.34552	-0.00015304	-0.032268	-1.4292E-05	442.9326702114805	53.318	1.7701	52.984	52.15	53.92	-0.33473					63	33	3	0	0	0	0.89272	1	19712	19712		0.13989	0	1	11964000			28462	8897	18111	18206	27345	27345					0.12672781428000235
RRRRAPSSFG	10	Unmodified	_RRRRAPSSFG_					0	0	0		ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	MSMS	HCT116MG_D190212_S1	1	397.2252502441406	3	397.226883	1188.65882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.478	1	10.478	9.9784	10.978	0								0	0	0	0.96804	1	3219	3219		0.69767	0.29695	1				28463	7114	18112	18207	27346	27346					0.07203784048692796
RRRRARLLQHN	11	Unmodified	_RRRRARLLQHN_					0	0	0		sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	492.6348876953125	3	492.634536	1474.88178	0.17154	8.4504E-05	0.16567	8.1613E-05	0.3372	0.00016612	492.6345828568713	53.49	1.2383	53.301	52.449	53.687	-0.1894					46	23	2	0	0	0	0.74191	1	20681	20681		0.45452	0.087843	1	47330000			28464	18222	18113	18208	27347	27347					0.16333277833791726
RRRRARLLQHN	11	Unmodified	_RRRRARLLQHN_					0	0	0		sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	492.63458251953125	3	492.634536	1474.88178	0.29482	0.00014524	0.25196	0.00012412	0.54678	0.00026936	492.63454638024047	54.643	2.8233	54.453	52.553	55.376	-0.1894					151	54	5	0	0	0	0.74191	1	20909	20909		0.08335	0	1	466930000			28465	18222	18113	18208	27348	27348					0.16333277833791726
RRRRARLLQHN	11	Unmodified	_RRRRARLLQHN_					0	0	0		sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	492.6347961425781	3	492.634536	1474.88178	0.28054	0.0001382	0.21477	0.0001058	0.49531	0.00024401	492.63453352561993	54.802	2.2403	54.479	52.838	55.078	-0.32349					107	42	4	0	0	0	0.74191	1	20033	20033		0	0	1	41964000			28466	18222	18113	18208	27349	27349					0.16333277833791726
RRRRDWYKIRL	11	Unmodified	_RRRRDWYKIRL_					0	0	0			REV__ENSG00000189132|ENST00000329357|FAM47B	REV__ENSG00000189132|ENST00000329357|FAM47B	MSMS	HCT116MG_D190212_S2	2	540.3756103515625	3	539.990208	1616.9488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.237	1	22.852	22.352	23.352	-0.3852								0	0	0	0.96208	1	8272	8272		0	0	1		+		28467	13991	18114	18209	27350	27350					0.1649988832486997
RRRRELRRLRK	11	Unmodified	_RRRRELRRLRK_					0	0	0			REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	REV__CACNA1H|p.G2053Afs*135|1|0.13|ENSG00000196557|chr16:1220085-1220085|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	798.021484375	2	798.019289	1594.02403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.546	1	44.239	43.739	44.739	-0.30759								0	0	0	0.96208	1	16656	16656		0	0	1		+		28468	10080	18115	18210	27351	27351					0.25077490575927186
RRRRFKMRRMK	11	Unmodified	_RRRRFKMRRMK_					0	0	0		GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant;ENSG00000023171|ENST00000635736|GRAMD1B	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	540.99267578125	3	540.99279	1619.95654	0.62149	0.00033622	-0.55613	-0.00030086	0.065368	3.5364E-05	540.9925260716182	54.432	1.1711	54.432	53.873	55.044	0					44	22	3	0	0	0	0.74191	1	20796	20796		0	0	1	74153000			28469	946	18116	18211	27352	27352					0.17136001049129845
RRRRFKMRRMK	11	Unmodified	_RRRRFKMRRMK_					0	0	0		GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant;ENSG00000023171|ENST00000635736|GRAMD1B	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	540.992919921875	3	540.99279	1619.95654	0.47453	0.00025672	-0.6626	-0.00035846	-0.18807	-0.00010175	540.9924403174348	55.182	0.8668	54.994	54.305	55.171	-0.18797					27	16	2	0	0	0	0.74191	1	21234	21234		0	0	1	40676000			28470	946	18116	18211	27353	27353					0.17136001049129845
RRRRFKMRRMK	11	Unmodified	_RRRRFKMRRMK_					0	0	0		GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant;ENSG00000023171|ENST00000635736|GRAMD1B	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	540.9921264648438	3	540.99279	1619.95654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.794	1	14.475	13.975	14.975	-0.31952								0	0	0	0.96208	1	4870	4870		0	0	1				28471	946	18116	18211	27354	27354					0.17136001049129845
RRRRFKMRRMK	11	Unmodified	_RRRRFKMRRMK_					0	0	0		GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant;ENSG00000023171|ENST00000635736|GRAMD1B	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		3	540.99279	1619.95654	0.56528	0.00030581	-0.86196	-0.00046632	-0.29668	-0.0001605	540.9925270091989	55.271	0.31271	54.954	54.771	55.084	-0.31774	-0.019998	-0.00020107	NaN	0	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2758000			28472	946	18116	18211							0.17136001049129845
RRRRGRRRRLL	11	Unmodified	_RRRRGRRRRLL_					0	0	0		ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MSMS	HCT116MG_D190212_S1	1	776.0132446289062	2	776.011799	1550.00904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.34	1	28.34	27.84	28.84	0								0	0	0	0.96208	1	10321	10321		0	0	1				28473	7770	18117	18212	27355	27355					0.25604043498628926
RRRRHRII	8	Unmodified	_RRRRHRII_					0	0	0		nc|ENSG00000184716|A6NH21-2|SERINC4;ENST00000448553.5_1_15:44087200-44089477:-|nuORF;nc|ENSG00000184716|A6NH21|SERINC4	nc|ENSG00000184716|A6NH21-2|SERINC4	nc|ENSG00000184716|A6NH21-2|SERINC4	MULTI-SECPEP	HCT116MG_D190212_S1	1	582.3035278320312	2	581.878856	1161.74316	0.44428	0.00025852	0.44191	0.00025714	0.88619	0.00051566	581.8791498955543	58.236	0.23973	58.236	58.173	58.413	0					5	4	2	0	0	0	0.33585	1	22434	22434		0.69038	0	1	47363000			28474	7969	18118	18213	27356	27356					0.16875779656129453
RRRRKGRQRPI	11	Unmodified	_RRRRKGRQRPI_					0	0	0		ENST00000308664.10_1_12:110719006-110719138:+|nuORF	ENST00000308664.10_1_12:110719006-110719138:+|nuORF	ENST00000308664.10_1_12:110719006-110719138:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	493.3861389160156	3	493.650297	1477.92906	0.33912	0.00016741	0.06684	3.2996E-05	0.40596	0.0002004	493.65026016018754	56.505	0.568	56.505	56.273	56.841	0					32	10	4	0	0	0	0.36631	1	21856	21856		0	0	1	96957000			28475	7038	18119	18214	27357	27357					0.20921557104793465
RRRRKGRQRPI	11	Unmodified	_RRRRKGRQRPI_					0	0	0		ENST00000308664.10_1_12:110719006-110719138:+|nuORF	ENST00000308664.10_1_12:110719006-110719138:+|nuORF	ENST00000308664.10_1_12:110719006-110719138:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	493.650390625	3	493.650297	1477.92906	0.40588	0.00020036	0.0073264	3.6167E-06	0.4132	0.00020398	493.65021384149526	56.664	0.58069	56.481	56.259	56.84	-0.18261					36	10	5	0	0	0	0.74191	1	21857	21857		0.45452	0	1	147950000			28476	7038	18119	18214	27358	27358					0.20921557104793465
RRRRKGRQRPI	11	Unmodified	_RRRRKGRQRPI_					0	0	0		ENST00000308664.10_1_12:110719006-110719138:+|nuORF	ENST00000308664.10_1_12:110719006-110719138:+|nuORF	ENST00000308664.10_1_12:110719006-110719138:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	493.6504821777344	3	493.650297	1477.92906	0.41405	0.0002044	0.011229	5.5431E-06	0.42528	0.00020994	493.6502569674807	56.793	0.31249	56.493	56.363	56.675	-0.3004					11	5	3	0	0	0	0.74191	1	21327	21327		0	0	1	2856600			28477	7038	18119	18214	27359	27359					0.20921557104793465
RRRRKKQKRRE	11	Unmodified	_RRRRKKQKRRE_					0	0	0		ENST00000325083.12_1_8:17815084-17817658:+|nuORF	ENST00000325083.12_1_8:17815084-17817658:+|nuORF	ENST00000325083.12_1_8:17815084-17817658:+|nuORF	MSMS	HCT116MG_D190212_S1	1	799.0097045898438	2	799.008922	1596.00329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.311	1	39.311	38.811	39.811	0								0	0	0	0.96208	1	14743	14743		0	0	1				28478	7129	18120	18215	27360	27360					0.22912900196274677
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant;IGSF9|p.P909Lfs*19|1|0.52|ENSG00000085552|chr1:159928662-159928662|G/-|frameshift_variant;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	512.9851684570312	3	512.985457	1535.93454	0.48455	0.00024857	-0.079051	-4.0552E-05	0.4055	0.00020801	512.9853222935401	53.113	0.92484	53.113	52.434	53.359	0					60	17	5	0	0	0	0.74191	1	20235	20235		0.40827	0.40827	1	315160000			28479	8390	18121	18216	27361	27361					0.18801235896580692
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant;IGSF9|p.P909Lfs*19|1|0.52|ENSG00000085552|chr1:159928662-159928662|G/-|frameshift_variant;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.985595703125	3	512.985457	1535.93454	0.23091	0.00011845	0.18221	9.3473E-05	0.41312	0.00021193	512.985476578379	54.986	2.6699	54.798	52.915	55.585	-0.18797					191	51	6	0	0	0	0.74191	2	20807	20807;21034		0.40827	0.335	1	1183600000			28480	8390	18121	18216	27362;27363	27362					0.18801235896580692
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant;IGSF9|p.P909Lfs*19|1|0.52|ENSG00000085552|chr1:159928662-159928662|G/-|frameshift_variant;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MSMS	HCT116MG_D190212_S2	2	512.8057861328125	3	512.985457	1535.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.922	1	57.747	57.247	58.247	-0.17494								0	0	0	0.9619	1	22374	22374		0.094841	0.094841	1				28481	8390	18121	18216	27364	27364					0.18801235896580692
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant;IGSF9|p.P909Lfs*19|1|0.52|ENSG00000085552|chr1:159928662-159928662|G/-|frameshift_variant;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	512.9851684570312	3	512.985457	1535.93454	0.18818	9.6534E-05	0.16333	8.3784E-05	0.35151	0.00018032	512.9854690807514	55.084	1.6712	54.792	53.517	55.188	-0.2918					78	31	4	0	0	0	0.74191	1	20787	20787		0.45452	0.37117	1	23358000			28482	8390	18121	18216	27365	27365					0.18801235896580692
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant;IGSF9|p.P909Lfs*19|1|0.52|ENSG00000085552|chr1:159928662-159928662|G/-|frameshift_variant;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	513.320556640625	3	512.985457	1535.93454	0.33454	0.00017162	0.095631	4.9057E-05	0.43017	0.00022067	512.9854420136556	55.092	1.8236	54.775	53.573	55.396	-0.31774					104	34	5	0	0	0	0.74191	1	20443	20443		0.08335	0.08335	1	87386000			28483	8390	18121	18216	27366	27366					0.18801235896580692
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant;IGSF9|p.P909Lfs*19|1|0.52|ENSG00000085552|chr1:159928662-159928662|G/-|frameshift_variant;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	512.985457	1535.93454	0.48455	0.00024857	-0.079051	-4.0552E-05	0.4055	0.00020801	512.9853222935401	53.113	0.92484	53.113	52.434	53.359	0	0	0	NaN	0.40827	60	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315160000			28484	8390	18121	18216							0.18801235896580692
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant;IGSF9|p.P909Lfs*19|1|0.52|ENSG00000085552|chr1:159928662-159928662|G/-|frameshift_variant;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	512.985457	1535.93454	0.23091	0.00011845	0.18221	9.3473E-05	0.41312	0.00021193	512.985476578379	54.986	2.6699	54.798	52.915	55.585	-0.18797	0.0099526	9.2816E-05	NaN	0.40827	191	51	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1183600000			28485	8390	18121	18216							0.18801235896580692
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;ENST00000493195.5_1_1:159899139-159902434:-|nuORF;IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant;IGSF9|p.P909Lfs*19|1|0.52|ENSG00000085552|chr1:159928662-159928662|G/-|frameshift_variant;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	512.985457	1535.93454	0.33454	0.00017162	0.095631	4.9057E-05	0.43017	0.00022067	512.9854420136556	55.092	1.8236	54.775	53.573	55.396	-0.31774	-0.013786	-4.0432E-05	NaN	0.40827	104	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87386000			28486	8390	18121	18216							0.18801235896580692
RRRRLLLLRRR	11	Unmodified	_RRRRLLLLRRR_					0	0	0		ENST00000324856.11_1_1:27022599-27022719:+|nuORF	ENST00000324856.11_1_1:27022599-27022719:+|nuORF	ENST00000324856.11_1_1:27022599-27022719:+|nuORF	MSMS	HCT116MG_D190212_S1	1	522.0272216796875	3	522.025476	1563.0546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.947	1	11.947	11.447	12.447	0								0	0	0	0.96208	1	3804	3804		0	0	1				28487	7127	18122	18217	27367	27367					0.2955926896099754
RRRRLLLLRRR	11	Unmodified	_RRRRLLLLRRR_					0	0	0		ENST00000324856.11_1_1:27022599-27022719:+|nuORF	ENST00000324856.11_1_1:27022599-27022719:+|nuORF	ENST00000324856.11_1_1:27022599-27022719:+|nuORF	MSMS	HCT116MG_D190212_S1	1	522.0274658203125	3	522.025476	1563.0546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.545	1	12.545	12.045	13.045	0								0	0	0	0.96208	1	4032	4032		0	0	1				28488	7127	18122	18217	27368	27368					0.2955926896099754
RRRRLLRWPL	10	Unmodified	_RRRRLLRWPL_					0	0	0			REV__ENST00000237186.10_1_6:83602743-83775466:-|nuORF	REV__ENST00000237186.10_1_6:83602743-83775466:-|nuORF	MSMS	HCT116MG_D190212_S4	4	711.4572143554688	2	711.457471	1420.90039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.731	1	48.363	47.863	48.863	-0.36728								0	0	0	0.96911	1	18054	18054		0.45834	0.057624	1		+		28489	14556	18123	18218	27369	27369					0.20677439475639403
RRRRLRHL	8	Unmodified	_RRRRLRHL_					0	0	0		ENST00000549384.5_1_12:109042624-109125250:-|nuORF;ENST00000551059.1_1_12:109094839-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.25421142578125	3	388.254996	1161.74316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.306	1	46.936	46.436	47.436	-0.37038								0	0	0	0.8837	1	17494	17494		0.45834	0	1				28490	8746	18124	18219	27370	27370					0.16875779656106715
RRRRLRHL	8	Unmodified	_RRRRLRHL_					0	0	0		ENST00000549384.5_1_12:109042624-109125250:-|nuORF;ENST00000551059.1_1_12:109094839-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.25421142578125	3	388.254996	1161.74316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.558	1	50.201	49.701	50.701	-0.35749								0	0	0	0.8837	1	18788	18788		0.45834	0	1				28491	8746	18124	18219	27371	27371					0.16875779656106715
RRRRLRHL	8	Unmodified	_RRRRLRHL_					0	0	0		ENST00000549384.5_1_12:109042624-109125250:-|nuORF;ENST00000551059.1_1_12:109094839-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2541809082031	3	388.254996	1161.74316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.117	1	50.763	50.263	51.263	-0.35483								0	0	0	0.8837	1	19014	19014		0.45834	0	1				28492	8746	18124	18219	27372	27372					0.16875779656106715
RRRRLRHL	8	Unmodified	_RRRRLRHL_					0	0	0		ENST00000549384.5_1_12:109042624-109125250:-|nuORF;ENST00000551059.1_1_12:109094839-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2541198730469	3	388.254996	1161.74316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.157	1	58.88	58.38	59.38	-0.27731								0	0	0	0.8837	1	22255	22255		0.45834	0	1				28493	8746	18124	18219	27373	27373					0.16875779656106715
RRRRLRHL	8	Unmodified	_RRRRLRHL_					0	0	0		ENST00000549384.5_1_12:109042624-109125250:-|nuORF;ENST00000551059.1_1_12:109094839-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2538757324219	3	388.254996	1161.74316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.771	1	59.499	58.999	59.999	-0.27156								0	0	0	0.8837	1	22501	22501		0.45834	0	1				28494	8746	18124	18219	27374	27374					0.16875779656106715
RRRRLRHL	8	Unmodified	_RRRRLRHL_					0	0	0		ENST00000549384.5_1_12:109042624-109125250:-|nuORF;ENST00000551059.1_1_12:109094839-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	ENST00000549384.5_1_12:109042624-109125250:-|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2536926269531	3	388.254996	1161.74316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.337	1	60.071	59.571	60.571	-0.26582								0	0	0	0.8837	1	22731	22731		0.45834	0	1				28495	8746	18124	18219	27375	27375					0.16875779656106715
RRRRLVRKRKK	11	Unmodified	_RRRRLVRKRKK_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MSMS	HCT116MG_D190212_S3	3	776.5315551757812	2	776.534575	1551.0546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.134	1	51.825	51.325	52.325	-0.30927								0	0	0	0.95954	1	19701	19701		1.3295	1.3295	1				28496	3534	18125	18220	27376	27376					0.3011126896096812
RRRRLVWTPSQ	11	Unmodified	_RRRRLVWTPSQ_					0	0	0		nc|ENSG00000281720|Q9UBX2-2|DUX4;nc|ENSG00000224807|Q6RFH8|DUX4L9;nc|ENSG00000258834|P0CJ87|DUX4L4;nc|ENSG00000281652|P0CJ90|DUX4L7;ENSG00000260596|ENST00000565211|DUX4	nc|ENSG00000281720|Q9UBX2-2|DUX4	nc|ENSG00000281720|Q9UBX2-2|DUX4	MULTI-SECPEP	HCT116MG_D190212_S1	1	486.23785400390625	3	485.619892	1453.83785	0.15477	7.5161E-05	-0.59871	-0.00029075	-0.44394	-0.00021559	485.6195915710726	25.483	0.15634	25.483	25.353	25.509	0					4	2	2	0	0	0	0.36585	1	9149	9149		1.9275	1.5192	1	2815400			28497	6625	18126	18221	27377	27377					0.12908248616781748
RRRRLWRWWWK	11	Unmodified	_RRRRLWRWWWK_					0	0	0		chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	HCT116MG_D190212_S1	1	595.7894897460938	3	595.678076	1784.0124	0.47974	0.00028577	-0.93008	-0.00055403	-0.45034	-0.00026825	595.6775890558729	37.659	1.1925	37.659	37.348	38.54	0					32	22	2	0	0	0	0.36631	1	14257	14257		0	0	1	44438000			28498	446	18127	18222	27378	27378					0.15175293552601943
RRRRLWRWWWK	11	Unmodified	_RRRRLWRWWWK_					0	0	0		chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|474|19.73|0.0|20.91|+|1|HNRNPA1,HNRNPA1|2	MULTI-MATCH	HCT116MG_D190212_S2	2		3	595.678076	1784.0124	0.45975	0.00027386	-1.0459	-0.00062305	-0.58619	-0.00034918	595.6775508232112	37.631	1.2339	37.528	37.078	38.311	-0.10318	-0.06592	-4.2348E-05	NaN	0	42	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531260000			28499	446	18127	18222							0.15175293552601943
RRRRPISV	8	Unmodified	_RRRRPISV_					0	0	0		nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000228741|Q96N96|SPATA13	nc|ENSG00000228741|Q96N96|SPATA13	MSMS	HCT116MG_D190212_S1	1	520.3319702148438	2	520.333416	1038.65228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.857	1	48.857	48.357	49.357	0								0	0	0	0.8837	1	18602	18602		0.69038	0.16561	1				28500	5696	18128	18223	27379	27379					0.13449890887977745
RRRRPISV	8	Unmodified	_RRRRPISV_					0	0	0		nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000228741|Q96N96|SPATA13	nc|ENSG00000228741|Q96N96|SPATA13	MSMS	HCT116MG_D190212_S1	1	520.3324584960938	2	520.333416	1038.65228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.904	1	52.904	52.404	53.404	0								0	0	0	0.8837	1	20247	20247		0.69038	0	1				28501	5696	18128	18223	27380	27380					0.13449890887977745
RRRRPISV	8	Unmodified	_RRRRPISV_					0	0	0		nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000228741|Q96N96|SPATA13	nc|ENSG00000228741|Q96N96|SPATA13	MSMS	HCT116MG_D190212_S4	4	520.3331298828125	2	520.333416	1038.65228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.383	1	34.997	34.497	35.497	-0.38606								0	0	0	0.8837	1	12957	12957		2.5775	0.51773	1				28502	5696	18128	18223	27381	27381					0.13449890887977745
RRRRPISV	8	Unmodified	_RRRRPISV_					0	0	0		nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000228741|Q96N96|SPATA13	nc|ENSG00000228741|Q96N96|SPATA13	MSMS	HCT116MG_D190212_S4	4	520.3325805664062	2	520.333416	1038.65228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.621	1	61.367	60.867	61.867	-0.25457								0	0	0	0.8837	1	23251	23251		0.69038	0	1				28503	5696	18128	18223	27382	27382					0.13449890887977745
RRRRPPAP	8	Unmodified	_RRRRPPAP_					0	0	0		ENSG00000153976|ENST00000284110|HS3ST3A1;HS3ST3A1|p.T371Mfs*31|1|0.2|ENSG00000153976|chr17:13496306-13496307|-/ATGGATAACCA|frameshift_variant	ENSG00000153976|ENST00000284110|HS3ST3A1;REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MULTI-MSMS	HCT116MG_D190212_S1	1	503.3121032714844	2	503.312484	1004.61041	0.20894	0.00010516	-0.48343	-0.00024331	-0.27448	-0.00013815	503.3121436804939	48.022	0.31097	48.022	47.841	48.152	0					11	5	3	0	0	0	0.86388	1	18286	18286		2.8892	0	1	23442000			28504	13890;4201	18129	18224	27383	27383					0.10829335199457546
RRRRQLAAHPH	11	Unmodified	_RRRRQLAAHPH_					0	0	0		ENST00000264712.7_1_2:26204855-26205287:-|nuORF	ENST00000264712.7_1_2:26204855-26205287:-|nuORF	ENST00000264712.7_1_2:26204855-26205287:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	699.4091186523438	2	699.408509	1396.80247	0.86161	0.00060262	-0.031563	-2.2075E-05	0.83005	0.00058054	699.4083385544634	53.387	2.917	53.387	52.28	55.197	0					145	56	4	0	0	0	0.74191	1	20573	20573		1.1933	1.1933	1	595800000			28505	6898	18130	18225	27384	27384					0.11993630879624106
RRRRRFVVA	9	Unmodified	_RRRRRFVVA_					0	0	0		ENST00000583932.1_1_17:56065528-56065615:-|nuORF	ENST00000583932.1_1_17:56065528-56065615:-|nuORF	ENST00000583932.1_1_17:56065528-56065615:-|nuORF	MSMS	HCT116MG_D190212_S1	1	608.3858642578125	2	608.386514	1214.75848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.962	1	43.962	43.462	44.462	0								0	0	0	0.7701	1	16624	16624		0.52476	0.066424	1				28506	8972	18131	18226	27385	27385					0.15968646453325164
RRRRRFVVA	9	Unmodified	_RRRRRFVVA_					0	0	0		ENST00000583932.1_1_17:56065528-56065615:-|nuORF	ENST00000583932.1_1_17:56065528-56065615:-|nuORF	ENST00000583932.1_1_17:56065528-56065615:-|nuORF	MSMS	HCT116MG_D190212_S3	3	608.385498046875	2	608.386514	1214.75848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.094	1	43.786	43.286	44.286	-0.30759								0	0	0	0.7701	1	16473	16473		0.52476	0	1				28507	8972	18131	18226	27386	27386					0.15968646453325164
RRRRRHRCHRR	11	Unmodified	_RRRRRHRCHRR_					0	0	0			REV__ENST00000361078.6_1_2:20550380-20550560:-|nuORF	REV__ENST00000361078.6_1_2:20550380-20550560:-|nuORF	MSMS	HCT116MG_D190212_S1	1	548.9893798828125	3	548.98943	1643.94646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.063	1	21.063	20.563	21.563	0								0	0	0	0.9613	1	7392	7392		0.40827	0.335	1		+		28508	15088	18132	18227	27387	27387					0.1502457415876961
RRRRRHSL	8	Unmodified	_RRRRRHSL_					0	0	0			REV__ENST00000376395.8_2_9:86322580-86322796:-|nuORF	REV__ENST00000376395.8_2_9:86322580-86322796:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	379.2489929199219	3	379.570984	1135.69112	0.13933	5.2886E-05	0.54038	0.00020511	0.67971	0.000258	379.57103708309006	54.906	0.52122	54.589	54.406	54.928	-0.31774					11	9	2	0	0	0	0.33524	1	20660	20660		0.40072	0.40072	1	3317300	+		28509	15223	18133	18228	27388	27388					0.1287061624236685
RRRRRHSL	8	Unmodified	_RRRRRHSL_					0	0	0			REV__ENST00000376395.8_2_9:86322580-86322796:-|nuORF	REV__ENST00000376395.8_2_9:86322580-86322796:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		3	379.570984	1135.69112	-0.16214	-6.1545E-05	0.96368	0.00036578	0.80153	0.00030424	379.5712759608261	54.619	0.56224	54.43	54.15	54.712	-0.1894	-0.079313	0.00033501	NaN	0.40072	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14868000	+		28510	15223	18133	18228							0.1287061624236685
RRRRRKKQAPQ	11	Unmodified	_RRRRRKKQAPQ_					0	0	0			REV__ENST00000424834.6_1_13:24798679-24823837:+|nuORF	REV__ENST00000424834.6_1_13:24798679-24823837:+|nuORF	MSMS	HCT116MG_D190212_S3	3	740.4644775390625	2	740.463816	1478.91308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.753	1	54.457	53.957	54.957	-0.29587								0	0	0	0.96208	1	20754	20754		0	0	1		+		28511	15540	18134	18229	27389	27389					0.19277850867888446
RRRRRKKQAPQ	11	Unmodified	_RRRRRKKQAPQ_					0	0	0			REV__ENST00000424834.6_1_13:24798679-24823837:+|nuORF	REV__ENST00000424834.6_1_13:24798679-24823837:+|nuORF	MSMS	HCT116MG_D190212_S3	3	740.46533203125	2	740.463816	1478.91308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.334	1	56.05	55.55	56.55	-0.28367								0	0	0	0.96149	1	21384	21384		0.30703	0.03801	1		+		28512	15540	18134	18229	27390	27390					0.19277850867888446
RRRRRKKSHYL	11	Unmodified	_RRRRRKKSHYL_					0	0	0		ENST00000488854.6_1_3:113082116-113098301:-|nuORF	ENST00000488854.6_1_3:113082116-113098301:-|nuORF	ENST00000488854.6_1_3:113082116-113098301:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	519.1390380859375	3	519.322069	1554.94438	0.59025	0.00030653	0.7572	0.00039323	1.3475	0.00069976	519.3225187891453	17.333	0.15651	17.333	17.202	17.359	0					4	2	2	0	0	0	0.36631	1	5894	5894		0	0	1	1969200			28513	8321	18135	18230	27391	27391					0.1891042390200255
RRRRRKRAP	9	Unmodified	_RRRRRKRAP_					0	0	0		ENST00000518385.5_3_8:97506087-97614626:+|nuORF;ENST00000302190.8_1_8:97506012-97605724:+|nuORF	ENST00000518385.5_3_8:97506087-97614626:+|nuORF	ENST00000518385.5_3_8:97506087-97614626:+|nuORF	MSMS	HCT116MG_D190212_S3	3	626.4113159179688	2	626.408312	1250.80207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.048	1	61.817	61.317	62.317	-0.23129								0	0	0	0.7701	1	23695	23695		0.52476	0	1				28514	7006	18136	18231	27392	27392					0.18670255950451065
RRRRRLFFRT	10	Unmodified	_RRRRRLFFRT_					0	0	0		ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	732.4501342773438	2	732.450177	1462.8858	0.6928	0.00050744	-0.20864	-0.00015282	0.48415	0.00035462	732.4495189336657	61.087	1.757	61.087	60.491	62.248	0					50	33	2	0	0	0	0.89272	1	23556	23556		0.40072	0.093686	1	14798000			28515	8752	18137	18232	27393	27393					0.17287367327458014
RRRRRLLA	8	Unmodified	_RRRRRLLA_					0	0	0			REV__ENSG00000197380|ENST00000391916|DACT3	REV__ENSG00000197380|ENST00000391916|DACT3	MSMS	HCT116MG_D190212_S4	4	366.2484436035156	3	366.24773	1095.72136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.94	1	58.657	58.157	59.157	-0.28305								0	0	0	0.8837	1	22167	22167		0.45834	0	1		+		28516	14068	18138	18233	27394	27394					0.17732974907562493
RRRRRMKRPFR	11	Unmodified	_RRRRRMKRPFR_					0	0	0		ENSG00000183770|ENST00000648323|FOXL2	ENSG00000183770|ENST00000648323|FOXL2	ENSG00000183770|ENST00000648323|FOXL2	MSMS	HCT116MG_D190212_S1	1	539.0783081054688	3	538.998932	1613.97497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.429	1	27.429	26.929	27.929	0								0	0	0	0.96208	1	9952	9952		0	0	1				28517	5740	18139	18234	27395	27395					0.1925387901535487
RRRRRNRRRKP	11	Unmodified	_RRRRRNRRRKP_					0	0	0			REV__FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant	REV__FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	803.7051391601562	2	804.01233	1606.01011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.11	1	44.11	43.61	44.61	0								0	0	0	0.96208	1	16684	16684		0	0	1		+		28518	16811	18140	18235	27396	27396					0.23134257867513952
RRRRRPARPL	10	Unmodified	_RRRRRPARPL_					0	0	0			REV__ENST00000398760.4_1_7:57085878-57087841:-|nuORF	REV__ENST00000398760.4_1_7:57085878-57087841:-|nuORF	MSMS	HCT116MG_D190212_S4	4	445.2549133300781	3	445.288589	1332.84394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.576	1	56.269	55.769	56.769	-0.30626								0	0	0	0.97045	1	21212	21212		0.15932	0	1		+		28519	15381	18141	18236	27397	27397					0.1908281163898664
RRRRRPLWRVY	11	Unmodified	_RRRRRPLWRVY_					0	0	0		ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	MSMS	HCT116MG_D190212_S1	1	807.5586547851562	2	807.489834	1612.96511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.777	1	59.777	59.277	60.277	0								0	0	0	0.96208	1	23039	23039		0	0	1				28520	5219	18142	18237	27398	27398					0.1831501428162028
RRRRRPRPRQ	10	Unmodified	_RRRRRPRPRQ_					0	0	0			REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	MSMS	HCT116MG_D190212_S1	1	717.4462890625	2	717.4485	1432.88245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.384	1	20.384	19.884	20.884	0								0	0	0	0.96377	1	7121	7121		1.6526	0	1		+		28521	12290	18143	18238	27399	27399					0.18332117273484982
RRRRRQRPVSL	11	Unmodified	_RRRRRQRPVSL_					0	0	0			REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	740.3822021484375	2	740.463816	1478.91308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.852	1	56.573	56.073	57.073	-0.27913								0	0	0	0.95954	1	21592	21592		1.3295	0.25807	1		+		28522	10173	18144	18239	27400	27400					0.1927785086786571
RRRRRQRPVSL	11	Unmodified	_RRRRRQRPVSL_					0	0	0			REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	REV__CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	740.4652099609375	2	740.463816	1478.91308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.016	1	44.643	44.143	45.143	-0.37326								0	0	0	0.95954	1	16591	16591		1.3295	0.13619	1		+		28523	10173	18144	18239	27401	27401					0.1927785086786571
RRRRRRKIEIE	11	Unmodified	_RRRRRRKIEIE_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	784.4904174804688	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.815	1	51.506	51.006	52.006	-0.30927								0	0	0	0.96208	1	19573	19573		0	0	1				28524	430	18145	18240	27402	27402					0.20470389210845497
RRRRRRKIEIE	11	Unmodified	_RRRRRRKIEIE_					0	0	0		CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.N2588Ifs*4|1|0.14|ENSG00000171316|chr8:60861054-60861054|A/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	CHD7|p.D2988Mfs*3|5|0.36|ENSG00000171316|chr8:60865895-60865895|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	784.8811645507812	2	784.49003	1566.96551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.246	1	53.923	53.423	54.423	-0.32349								0	0	0	0.96208	1	20277	20277		0	0	1				28525	430	18145	18240	27403	27403					0.20470389210845497
RRRRRRKRRHI	11	Unmodified	_RRRRRRKRRHI_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MSMS	HCT116MG_D190212_S2	2	823.53955078125	2	823.535972	1645.05739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.704	1	46.593	46.093	47.093	-0.11121								0	0	0	0.96208	1	17797	17797		0	0	1		+		28526	17074	18146	18241	27404	27404					0.26066537138513013
RRRRRRLPHVL	11	Unmodified	_RRRRRRLPHVL_					0	0	0		ENST00000293662.8_1_12:52407935-52408853:+|nuORF	ENST00000293662.8_1_12:52407935-52408853:+|nuORF	ENST00000293662.8_1_12:52407935-52408853:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	505.66229248046875	3	505.662426	1513.96545	0.28475	0.00014399	0.054593	2.7606E-05	0.33934	0.00017159	505.66238461636385	61.414	1.8642	61.414	60.799	62.664	0					65	35	2	0	0	0	0.74191	3	23715	23715;23948;24184		0	0	1	13404000			28527	6965	18147	18242	27405;27406;27407	27405					0.22902434001480287
RRRRRRPPKSQ	11	Unmodified	_RRRRRRPPKSQ_					0	0	0			REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	498.3100891113281	3	498.310052	1491.90833	0.47691	0.00023765	0.039738	1.9802E-05	0.51665	0.00025745	498.31002018156596	53.832	2.8121	53.832	52.794	55.606	0					212	54	6	0	0	0	0.74191	1	20261	20261		0.40827	0.40827	1	2305000000	+		28528	14603	18148	18243	27408	27408					0.18204966725102167
RRRRRRPPKSQ	11	Unmodified	_RRRRRRPPKSQ_					0	0	0			REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	498.3099670410156	3	498.310052	1491.90833	0.26107	0.0001301	0.077729	3.8733E-05	0.3388	0.00016883	498.31000719576946	53.47	1.4452	53.28	52.242	53.687	-0.1894					86	27	4	0	0	0	0.74191	1	20533	20533		0.40827	0.40827	1	104090000	+		28529	14603	18148	18243	27409	27409					0.18204966725102167
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S2	2	797.4828491210938	2	797.480331	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.192	1	43.118	42.618	43.618	-0.073376								0	0	0	0.96208	1	16370	16370		0	0	1		+		28530	16265	18149	18244	27410	27410					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.9913940429688	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.487	1	50.173	49.673	50.673	-0.31381								0	0	0	0.96208	1	19039	19039		0	0	1		+		28531	16265	18149	18244	27411	27411					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.9913940429688	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.623	1	51.312	50.812	51.812	-0.31166								0	0	0	0.96141	1	19495	19495		0.094841	0	1		+		28532	16265	18149	18244	27412	27412					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.9915771484375	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.245	1	51.936	51.436	52.436	-0.30927								0	0	0	0.96141	1	19746	19746		0.094841	0.094841	1		+		28533	16265	18149	18244	27413	27413					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.9913940429688	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.842	1	52.535	52.035	53.035	-0.30639								0	0	0	0.96208	1	19986	19986		0	0	1		+		28534	16265	18149	18244	27414	27414					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.991455078125	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.417	1	53.114	52.614	53.614	-0.30305								0	0	0	0.96208	1	20217	20217		0	0	1		+		28535	16265	18149	18244	27415	27415					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.9912719726562	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.057	1	53.757	53.257	54.257	-0.29946								0	0	0	0.96208	1	20474	20474		0	0	1		+		28536	16265	18149	18244	27416	27416					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.9913330078125	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.658	1	54.362	53.862	54.862	-0.29587								0	0	0	0.96141	1	20716	20716		0.094841	0.094841	1		+		28537	16265	18149	18244	27417	27417					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.9913940429688	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.245	1	54.953	54.453	55.453	-0.2918								0	0	0	0.96208	1	20952	20952		0	0	1		+		28538	16265	18149	18244	27418	27418					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S4	4	531.9915161132812	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.712	1	50.357	49.857	50.857	-0.35483								0	0	0	0.96208	1	18850	18850		0	0	1		+		28539	16265	18149	18244	27419	27419					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S4	4	531.9909057617188	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.706	1	51.356	50.856	51.856	-0.35028								0	0	0	0.96141	1	19252	19252		0.094841	0	1		+		28540	16265	18149	18244	27420	27420					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S4	4	531.9901733398438	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.465	1	53.13	52.63	53.63	-0.33473								0	0	0	0.96208	1	19962	19962		0	0	1		+		28541	16265	18149	18244	27421	27421					0.17335477710571467
RRRRRRQARPW	11	Unmodified	_RRRRRRQARPW_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S4	4	531.991455078125	3	531.989313	1592.94611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.144	1	54.826	54.326	55.326	-0.31774								0	0	0	0.96208	1	20639	20639		0	0	1		+		28542	16265	18149	18244	27422	27422					0.17335477710571467
RRRRRRQRRRG	11	Unmodified	_RRRRRRQRRRG_					0	0	0			REV__ENST00000586027.5_1_19:14602515-14606910:-|nuORF	REV__ENST00000586027.5_1_19:14602515-14606910:-|nuORF	MSMS	HCT116MG_D190212_S1	1	805.006591796875	2	805.007579	1608.00061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.023	1	44.023	43.523	44.523	0								0	0	0	0.96208	1	16648	16648		0	0	1		+		28543	16652	18150	18245	27423	27423					0.22092489581973496
RRRRRRRGF	9	Unmodified	_RRRRRRRGF_					0	0	0			REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF	REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	658.411865234375	2	658.411386	1314.80822	0.82573	0.00054367	-0.2665	-0.00017546	0.55923	0.00036821	658.4109681619854	53.694	0.30866	53.694	53.565	53.873	0					14	5	3	0	0	0	0.73977	1	20579	20579		1.8442	0.51471	1	141160000	+		28544	14489	18151	18246	27424	27424					0.16340774181958295
RRRRRRRLQLA	11	Unmodified	_RRRRRRRLQLA_					0	0	0			REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF	REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF	MSMS	HCT116MG_D190212_S4	4	769.0012817382812	2	768.998357	1535.98216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.296	1	51.95	51.45	52.45	-0.34538								0	0	0	0.96208	1	19491	19491		0	0	1		+		28545	15370	18152	18247	27425	27425					0.23560934887473195
RRRRRRRPAP	10	Unmodified	_RRRRRRRPAP_					0	0	0			REV__PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant	REV__PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	459.6273498535156	3	459.627604	1375.86098	0.21766	0.00010004	0.12247	5.6289E-05	0.34012	0.00015633	459.627559505565	54.157	0.25645	54.157	54.026	54.282	0					12	4	3	0	0	0	0.89149	1	20769	20769		0.69767	0.69767	1	85755000	+		28546	17446	18153	18248	27426	27426					0.18808732244792736
RRRRRRRQARP	11	Unmodified	_RRRRRRRQARP_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MSMS	HCT116MG_D190212_S2	2	782.7097778320312	2	782.49123	1562.96791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.894	1	24.518	24.018	25.018	-0.37521								0	0	0	0.96208	1	8941	8941		0	0	1		+		28547	16265	18154	18249	27427	27427					0.20894282459153146
RRRRRRRRKDS	11	Unmodified	_RRRRRRRRKDS_					0	0	0		ENSG00000229674|ENST00000448797|H2AL3	ENSG00000229674|ENST00000448797|H2AL3	ENSG00000229674|ENST00000448797|H2AL3	MSMS	HCT116MG_D190212_S1	1	799.4962768554688	2	799.49397	1596.97339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.351	1	27.351	26.851	27.851	0								0	0	0	0.96149	1	9921	9921		0.30703	0	1				28548	6495	18155	18250	27428	27428					0.19877961250949738
RRRRRRRRLFF	11	Unmodified	_RRRRRRRRLFF_					0	0	0		ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MSMS	HCT116MG_D190212_S3	3	838.0299072265625	2	838.027449	1674.04034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.292	1	46.977	46.477	47.477	-0.31525								0	0	0	0.96208	1	17756	17756		0	0	1				28549	8752	18156	18251	27429	27429					0.23028616532701562
RRRRRRRRRDL	11	Unmodified	_RRRRRRRRRDL_					0	0	0		SLC24A3|p.E89Sfs*85|1|0.11|ENSG00000185052|chr20:19281079-19281080|-/ATCATTCACAG|frameshift_variant;SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant;ENSG00000185052|ENST00000328041|SLC24A3	SLC24A3|p.E89Sfs*85|1|0.11|ENSG00000185052|chr20:19281079-19281080|-/ATCATTCACAG|frameshift_variant	SLC24A3|p.E89Sfs*85|1|0.11|ENSG00000185052|chr20:19281079-19281080|-/ATCATTCACAG|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	826.5255126953125	2	826.523062	1651.03157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.564	1	28.234	27.734	28.734	-0.32987								0	0	0	0.96208	1	10424	10424		0	0	1				28550	5802	18157	18252	27430	27430					0.23209642896244986
RRRRRRRRRDL	11	Unmodified	_RRRRRRRRRDL_					0	0	0		SLC24A3|p.E89Sfs*85|1|0.11|ENSG00000185052|chr20:19281079-19281080|-/ATCATTCACAG|frameshift_variant;SLC24A3|p.K341Rfs*11|2|0.31|ENSG00000185052|chr20:19684289-19684289|C/-|frameshift_variant;ENSG00000185052|ENST00000328041|SLC24A3	SLC24A3|p.E89Sfs*85|1|0.11|ENSG00000185052|chr20:19281079-19281080|-/ATCATTCACAG|frameshift_variant	SLC24A3|p.E89Sfs*85|1|0.11|ENSG00000185052|chr20:19281079-19281080|-/ATCATTCACAG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	826.52392578125	2	826.523062	1651.03157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.412	1	60.146	59.646	60.646	-0.26582								0	0	0	0.96208	1	22762	22762		0	0	1				28551	5802	18157	18252	27431	27431					0.23209642896244986
RRRRRRRRRRK	11	Unmodified	_RRRRRRRRRRK_					0	0	0		ENSG00000229674|ENST00000448797|H2AL3	ENSG00000229674|ENST00000448797|H2AL3	ENSG00000229674|ENST00000448797|H2AL3	MSMS	HCT116MG_D190212_S2	2	854.5701904296875	2	854.565595	1707.11664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.312	1	58.141	57.641	58.641	-0.1703								0	0	0	0.96208	1	22533	22533		0	0	1				28552	6495	18158	18253	27432	27432					0.2913643315268928
RRRRRRRRRRL	11	Unmodified	_RRRRRRRRRRL_					0	0	0		ENST00000373930.3_1_9:123476433-123476640:-|nuORF	REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF;REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF	REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	MSMS	HCT116MG_D190212_S3	3	847.0621337890625	2	847.060146	1692.10574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.956	1	61.725	61.225	62.225	-0.23129								0	0	0	0.96208	1	23658	23658		0	0	1				28553	15197;15370	18159	18254	27433	27433					0.2873703077841583
RRRRRRRRRVP	11	Unmodified	_RRRRRRRRRVP_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	HCT116MG_D190212_S1	1	810.5301513671875	2	810.528147	1619.04174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.399	1	60.399	59.899	60.899	0								0	0	0	0.96149	1	23282	23282		0.30703	0.30703	1				28554	6751	18160	18255	27434	27434					0.2569825062146265
RRRRRRRWKRT	11	Unmodified	_RRRRRRRWKRT_					0	0	0			REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	REV__ENST00000306085.10_3_7:100730337-100730388:+|nuORF	MSMS	HCT116MG_D190212_S1	1	842.0299072265625	2	842.02798	1682.04141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.39	1	32.39	31.89	32.89	0								0	0	0	0.96208	1	11951	11951		0	0	1		+		28555	14808	18161	18256	27435	27435					0.22766830901605317
RRRRRRSAQHH	11	Unmodified	_RRRRRRSAQHH_					0	0	0			REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF	REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF	MSMS	HCT116MG_D190212_S1	1	758.4384155273438	2	758.438664	1514.86277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.895	1	59.895	59.395	60.395	0								0	0	0	0.96208	1	23082	23082		0	0	1		+		28556	14660	18162	18257	27436	27436					0.12593741262730873
RRRRRSPRRRS	11	Unmodified	_RRRRRSPRRRS_					0	0	0		ENST00000467963.5_3_5:889215-891867:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9	ENST00000467963.5_3_5:889215-891867:-|nuORF	ENST00000467963.5_3_5:889215-891867:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	513.3199462890625	3	513.652701	1537.93627	0.30504	0.00015669	2.1039	0.0010807	2.4089	0.0012374	513.653684860293	54.125	0.20838	53.795	53.665	53.874	-0.32923					5	3	2	0	0	0	0.36631	1	20199	20199		0.073264	0.073264	1	1518300			28557	8121	18163	18258	27437	27437					0.18882289705175026
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MULTI-MSMS	HCT116MG_D190212_S4	4	539.98486328125	3	539.984228	1616.93085	0.56881	0.00030715	1.1121	0.00060051	1.6809	0.00090766	539.9849887375482	55.702	0.57275	55.39	55.038	55.61	-0.312					14	10	2	0	0	0	0.74191	1	20894	20894		0	0	1	2026100	+		28558	13524	18164	18259	27438	27438					0.147065661227316
RRRRWIQRRPR	11	Unmodified	_RRRRWIQRRPR_					0	0	0		ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MSMS	HCT116MG_D190212_S1	1	818.506103515625	2	818.503807	1634.99306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.664	1	38.664	38.164	39.164	0								0	0	0	0.96149	1	14482	14482		0.30703	0.30703	1				28559	6828	18165	18260	27439	27439					0.20096337261679764
RRRRWKRKRRR	11	Unmodified	_RRRRWKRKRRR_					0	0	0		ENST00000557821.5_1_15:40588574-40589003:-|nuORF;ENST00000260402.7_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	MSMS	HCT116MG_D190212_S2	2	570.7022094726562	3	570.703507	1709.08869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.804	1	63.681	63.181	64.181	-0.12264								0	0	0	0.96208	1	24727	24727		0	0	1				28560	6840	18166	18261	27440	27440					0.26251110172574954
RRRRYPRRQQ	10	Unmodified	_RRRRYPRRQQ_					0	0	0			REV__ENSG00000065978|ENST00000321358|YBX1	REV__ENSG00000065978|ENST00000321358|YBX1	MULTI-MSMS	HCT116MG_D190212_S1	1	736.935546875	2	736.432516	1470.85048	0.89235	0.00065715	0.17459	0.00012857	1.0669	0.00078573	736.4323014341959	53.17	2.2041	53.17	52.383	54.587	0					82	42	3	0	0	0	0.89293	1	20426	20426		0.35063	0.043601	1	54825000	+		28561	10708	18167	18262	27441	27441					0.13388704799672269
RRRVKKRHRR	10	Unmodified	_RRRVKKRHRR_					0	0	0		nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2	nc|ENSG00000144057|Q96JF0-2|ST6GAL2	nc|ENSG00000144057|Q96JF0-2|ST6GAL2	MSMS	HCT116MG_D190212_S2	2	483.1453552246094	3	483.318771	1446.93448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.016	1	47.883	47.383	48.383	-0.13281								0	0	0	0.96404	1	18331	18331		1.5923	1.1378	1				28562	3849	18168	18263	27442	27442					0.22889280687240898
RRRVRKKMK	9	Unmodified	_RRRVRKKMK_					0	0	0			REV__ENST00000295321.8_1_2:128262310-128262487:-|nuORF	REV__ENST00000295321.8_1_2:128262310-128262487:-|nuORF	MSMS	HCT116MG_D190212_S1	1	419.94390869140625	3	419.943542	1256.8088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.379	1	11.379	10.879	11.879	0								0	0	0	0.77025	1	3576	3576		0	0	1		+		28563	14757	18169	18264	27443	27443					0.19066432786780751
RRRWLFWRRLR	11	Unmodified	_RRRWLFWRRLR_					0	0	0			REV__ENST00000368742.3_1_1:153234210-153234426:+|nuORF	REV__ENST00000368742.3_1_1:153234210-153234426:+|nuORF	MSMS	HCT116MG_D190212_S1	1	851.0167236328125	2	851.013476	1700.0124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.537	1	59.537	59.037	60.037	0								0	0	0	0.96208	1	22945	22945		0	0	1		+		28564	15138	18170	18265	27444	27444					0.1903929355262335
RRRWQKTRRKR	11	Unmodified	_RRRWQKTRRKR_					0	0	0			REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	542.3077392578125	3	543.004852	1625.99273	0.50729	0.00027546	4.0577	0.0022034	4.565	0.0024788	543.0073758555317	56.577	0.41256	56.577	56.273	56.686	0					10	7	2	0	0	0	0.36631	1	21796	21796		0	0	1	5703400	+		28565	14698	18171	18266	27445	27445					0.20476917541827788
RRRWQKTRRKR	11	Unmodified	_RRRWQKTRRKR_					0	0	0			REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	MSMS	HCT116MG_D190212_S2	2	543.00537109375	3	543.004852	1625.99273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.887	1	3.8249	3.3249	4.3249	-0.062129								0	0	0	0.96208	1	1234	1234		0	0	1		+		28566	14698	18171	18266	27446	27446					0.20476917541827788
RRRYLRRKER	10	Unmodified	_RRRYLRRKER_					0	0	0		ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	MULTI-MSMS	HCT116MG_D190212_S2	2	744.958984375	2	744.958366	1487.90218	1.0838	0.00080738	0.11115	8.28E-05	1.1949	0.00089018	744.9580069887558	56.831	0.47373	56.652	56.421	56.895	-0.17904					18	8	3	0	0	0	0.89393	1	21942	21942		0.30703	0.30703	1	12968000			28567	6706	18172	18267	27447	27447					0.17774448493582895
RRRYLRRKER	10	Unmodified	_RRRYLRRKER_					0	0	0		ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	MULTI-MATCH	HCT116MG_D190212_S1	1		2	744.958366	1487.90218	0.80485	0.00059958	0.043529	3.2428E-05	0.84838	0.00063201	744.958384869169	56.352	0.15538	56.352	56.222	56.377	0	-0.15001	-4.123E-05	NaN	0.30703	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22678000			28568	6706	18172	18267							0.17774448493582895
RRRYLRRKER	10	Unmodified	_RRRYLRRKER_					0	0	0		ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	744.958366	1487.90218	1.0838	0.00080738	0.11115	8.28E-05	1.1949	0.00089018	744.9580069887558	56.831	0.47373	56.652	56.421	56.895	-0.17904	0.15001	5.9515E-05	NaN	0.30703	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12968000			28569	6706	18172	18267							0.17774448493582895
RRSAYPHRL	9	Unmodified	_RRSAYPHRL_					0	0	0		RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;RPRD2|p.K249Sfs*6|1|0.36|ENSG00000163125|chr1:150446274-150446274|C/-|frameshift_variant;RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant;RPRD2|p.P772Lfs*42|2|0.19|ENSG00000163125|chr1:150471259-150471259|C/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2;RPRD2|p.T1353Pfs*60|1|0.13|ENSG00000163125|chr1:150473001-150473001|C/-|frameshift_variant;RPRD2|p.P1275Lfs*138|1|0.15|ENSG00000163125|chr1:150472768-150472768|C/-|frameshift_variant;RPRD2|p.G1389Efs*24|1|0.39|ENSG00000163125|chr1:150473110-150473110|G/-|frameshift_variant	RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant	RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	578.3287963867188	2	578.328331	1154.64211	0.082953	4.7974E-05	0.50068	0.00028956	0.58364	0.00033753	578.3285850659296	18.814	0.25994	18.451	18.269	18.529	-0.36325					10	4	3	0	0	0	0.053079	1	6493	6493		89.401	41.652	1	27102000			28570	4582	18173	18268	27448	27448					0.07097283162738677
RRSAYPHRL	9	Unmodified	_RRSAYPHRL_					0	0	0		RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;RPRD2|p.K249Sfs*6|1|0.36|ENSG00000163125|chr1:150446274-150446274|C/-|frameshift_variant;RPRD2|p.P733Hfs*4|1|0.43|ENSG00000163125|chr1:150471145-150471146|CC/-|frameshift_variant;RPRD2|p.P772Lfs*42|2|0.19|ENSG00000163125|chr1:150471259-150471259|C/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2;RPRD2|p.T1353Pfs*60|1|0.13|ENSG00000163125|chr1:150473001-150473001|C/-|frameshift_variant;RPRD2|p.P1275Lfs*138|1|0.15|ENSG00000163125|chr1:150472768-150472768|C/-|frameshift_variant;RPRD2|p.G1389Efs*24|1|0.39|ENSG00000163125|chr1:150473110-150473110|G/-|frameshift_variant	RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant	RPRD2|p.L1399Wfs*14|2|0.26|ENSG00000163125|chr1:150473136-150473136|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	385.8879699707031	3	385.887979	1154.64211	-0.35506	-0.00013702	0.26433	0.000102	-0.090732	-3.5012E-05	385.88799273612835	18.814	0.25994	18.451	18.269	18.529	-0.36325					10	4	3	0	0	0	0.053079	1	6494	6494		73.196	30.884	1	23164000			28571	4582	18173	18268	27449	27449					0.07097283162738677
RRSCQREHCK	10	Unmodified	_RRSCQREHCK_					0	0	0		TTBK2|p.Q1206R|1|0.32|ENSG00000128881|chr15:42745913-42745913|T/C|missense_variant	TTBK2|p.Q1206R|1|0.32|ENSG00000128881|chr15:42745913-42745913|T/C|missense_variant	TTBK2|p.Q1206R|1|0.32|ENSG00000128881|chr15:42745913-42745913|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	434.88177490234375	3	434.88039	1301.61934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4625	1	9.4625	8.9625	9.9625	0								0	0	0	0.96521	1	2867	2867		0.56317	0.32733	1				28572	18670	18174	18269	27450	27450					-0.019404272886731633
RRSDDMFTF	9	Unmodified	_RRSDDMFTF_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	588.2709350585938	2	587.769123	1173.52369	0.67667	0.00039773	-0.12666	-7.4448E-05	0.55001	0.00032328	588.2705280020136	46.749	0.20775	46.749	46.595	46.803	0					6	3	2	0	0	0	0.040027	1	17766	17766		79.596	37.757	1	11716000			28573	4180	18175	18270	27451	27451					-0.05612876927943944
RRSDDMFTF	9	Unmodified	_RRSDDMFTF_					0	0	0		RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant;RANBP2|p.H3114Sfs*18|1|0.33|ENSG00000153201|chr2:108782827-108782828|-/T|frameshift_variant;ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.S1486Rfs*51|1|0.05|ENSG00000153201|chr2:108764996-108764997|-/ATTTTGTATTC|frameshift_variant;RANBP2|p.K1989Nfs*9|1|0.05|ENSG00000153201|chr2:108766505-108766506|-/TATCCTG|frameshift_variant;RANBP2|p.K2576Nfs*63|2|0.22|ENSG00000153201|chr2:108768262-108768262|A/-|frameshift_variant;RANBP2|p.C2737Vfs*35|1|0.18|ENSG00000153201|chr2:108772957-108772957|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	RANBP2|p.F3068Lfs*10|1|0.06|ENSG00000153201|chr2:108782692-108782692|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	587.76953125	2	587.769123	1173.52369	0.96951	0.00056985	-0.43094	-0.00025329	0.53857	0.00031656	587.7687295686733	46.661	0.25724	46.55	46.42	46.677	-0.11121					15	4	4	0	0	0	0.0046822	2	17802	17802;17812		140.63	81.954	1	79333000			28574	4180	18175	18270	27452;27453	27452					-0.05612876927943944
RRSLLRRKLKR	11	Unmodified	_RRSLLRRKLKR_					0	0	0		chr12:65951415-65963245|431|16.75|0.63|4.73|+|1|HMGA2,HMGA2|1	chr12:65951415-65963245|431|16.75|0.63|4.73|+|1|HMGA2,HMGA2|1	chr12:65951415-65963245|431|16.75|0.63|4.73|+|1|HMGA2,HMGA2|1	MSMS	HCT116MG_D190212_S1	1	741.1149291992188	2	741.50241	1480.99027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.177	1	39.177	38.677	39.677	0								0	0	0	0.96208	1	14690	14690		0	0	1				28575	447	18176	18271	27454	27454					0.26901069084192386
RRSPFLQVF	9	Unmodified	_RRSPFLQVF_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	HCT116MG_D190212_S1	1	575.3300170898438	2	575.330008	1148.64546	0.33063	0.00019022	0.45677	0.00026279	0.7874	0.00045301	575.3303486333175	49.569	0.31008	49.569	49.389	49.699	0					11	5	3	0	0	0	0.21258	1	18878	18878		39.95	14.55	1	27711000			28576	1774	18177	18272	27455	27455					0.07708533216759861
RRSPFLQVF	9	Unmodified	_RRSPFLQVF_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	HCT116MG_D190212_S2	2	575.3302612304688	2	575.330008	1148.64546	0.074488	4.2855E-05	-0.079495	-4.5736E-05	-0.005007	-2.8807E-06	575.3299423338343	49.639	0.66171	49.475	49.127	49.789	-0.16369					32	12	4	0	0	0	0.24895	1	18976	18976		36.127	9.2434	1	172030000			28577	1774	18177	18272	27456	27456					0.07708533216759861
RRSPFLQVF	9	Unmodified	_RRSPFLQVF_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	HCT116MG_D190212_S2	2	383.8889465332031	3	383.889097	1148.64546	-0.36076	-0.00013849	-0.1884	-7.2324E-05	-0.54916	-0.00021082	383.88897849495703	49.661	0.50898	49.497	49.228	49.737	-0.16369					20	9	3	0	0	0	0.12205	1	18999	18999		42.312	24.87	1	57245000			28578	1774	18177	18272	27457	27457					0.07708533216759861
RRSRLQRRQ	9	Unmodified	_RRSRLQRRQ_					0	0	0		SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant;nc|ENSG00000172830|Q8TE77-4|SSH3;nc|ENSG00000172830|Q8TE77-2|SSH3;SSH3|p.E492*|1|0.12|ENSG00000172830|chr11:67310124-67310125|-/C|frameshift_variant;ENSG00000172830|ENST00000308127|SSH3	SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant	SSH3|p.H335Tfs*25|1|0.12|ENSG00000172830|chr11:67308287-67308287|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	419.2577209472656	3	419.257066	1254.74937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.713	1	51.53	51.03	52.03	-0.18369								0	0	0	0.76973	1	19848	19848		0.96228	0	1				28579	5264	18178	18273	27458	27458					0.1321825309698852
RRSRRRPRPQK	11	Unmodified	_RRSRRRPRPQK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	HCT116MG_D190212_S1	1	499.281494140625	3	498.310052	1491.90833	0.40479	0.00020171	0.12245	6.1018E-05	0.52724	0.00026273	498.3100241158112	52.613	1.0899	52.613	51.756	52.845	0					71	20	5	0	0	0	0.74191	1	20181	20181		0	0	1	348000000	+		28580	13457	18179	18274	27459	27459					0.18204966725102167
RRSRRRPRPQK	11	Unmodified	_RRSRRRPRPQK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	HCT116MG_D190212_S1	1	498.3102722167969	3	498.310052	1491.90833	0.47691	0.00023765	0.039738	1.9802E-05	0.51665	0.00025745	498.31002018156596	53.832	2.8121	53.832	52.794	55.606	0					212	54	6	0	0	0	0.74191	1	20486	20486		0	0	1	2305000000	+		28581	13457	18179	18274	27460	27460					0.18204966725102167
RRSRRRPRPQK	11	Unmodified	_RRSRRRPRPQK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-SECPEP	HCT116MG_D190212_S2	2	497.7872619628906	3	498.310052	1491.90833	0.26107	0.0001301	0.077729	3.8733E-05	0.3388	0.00016883	498.31000719576946	53.47	1.4452	53.28	52.242	53.687	-0.1894					86	27	4	0	0	0	0.36631	1	20625	20625		0.094841	0.094841	1	104090000	+		28582	13457	18179	18274	27461	27461					0.18204966725102167
RRSRRRPRPQK	11	Unmodified	_RRSRRRPRPQK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	HCT116MG_D190212_S3	3	498.3103942871094	3	498.310052	1491.90833	0.37042	0.00018458	0.086268	4.2988E-05	0.45668	0.00022757	498.6444511933896	54.722	1.828	54.426	53.042	54.87	-0.29587					90	34	4	0	0	0	0.74191	2	20314	20314;20563		0	0	1	17822000	+		28583	13457	18179	18274	27462;27463	27462					0.18204966725102167
RRSRYNPDVT	10	Unmodified	_RRSRYNPDVT_					0	0	0			REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant	REV__ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	632.3855590820312	2	632.331267	1262.64798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.144	1	40.071	39.571	40.571	-0.072838								0	0	0	0.90475	1	15131	15131		14.838	1.7958	1		+		28584	10004	18180	18275	27464	27464					0.027163368837364033
RRSSFLQVF	9	Unmodified	_RRSSFLQVF_					0	0	0		nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	MULTI-MSMS	HCT116MG_D190212_S1	1	570.8213500976562	2	570.31964	1138.62473	0.23523	0.00013416	-0.31538	-0.00017987	-0.080149	-4.5711E-05	570.3193323723609	49.736	0.25822	49.736	49.595	49.853	0					10	4	3	0	0	0	0.095731	1	18967	18967		72.968	42.743	1	23228000			28585	1742	18181	18276	27465	27465					0.06095942837100665
RRSSFLQVF	9	Unmodified	_RRSSFLQVF_					0	0	0		nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	MULTI-MSMS	HCT116MG_D190212_S2	2	570.3197631835938	2	570.31964	1138.62473	0.019514	1.1129E-05	-0.13149	-7.4993E-05	-0.11198	-6.3864E-05	570.3195022355312	49.858	0.40839	49.694	49.483	49.891	-0.16369					18	7	4	0	0	0	0.056114	1	19082	19082		88.954	45.096	1	197820000			28586	1742	18181	18276	27466	27466					0.06095942837100665
RRSSFLQVF	9	Unmodified	_RRSSFLQVF_					0	0	0		nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	nc|ENSG00000100934|Q15436-2|SEC23A	MULTI-MSMS	HCT116MG_D190212_S2	2	380.5483703613281	3	380.548852	1138.62473	-0.52272	-0.00019892	-0.80035	-0.00030457	-1.3231	-0.00050349	380.5485571554836	49.847	0.25517	49.684	49.534	49.789	-0.16369					8	4	2	0	0	0	0.23993	1	19112	19112		37.075	17.713	1	21776000			28587	1742	18181	18276	27467	27467					0.06095942837100665
RRSVCCCM	8	Unmodified	_RRSVCCCM_					0	0	0			REV__ENST00000475993.1_2_6:30551643-30551977:+|nuORF	REV__ENST00000475993.1_2_6:30551643-30551977:+|nuORF	MSMS	HCT116MG_D190212_S4	4	479.1958923339844	2	479.19791	956.381267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.7363	1	7.4948	6.9948	7.9948	-0.24153								0	0	0	0.8837	1	2364	2364		0.79363	0	1		+		28588	15912	18182	18277	27468	27468					-0.09866827466964878
RRTALMRR	8	Unmodified	_RRTALMRR_					0	0	0		BOP1|p.L36Sfs*154|1|0.41|ENSG00000261236|chr8:144289298-144289298|G/-|frameshift_variant	BOP1|p.L36Sfs*154|1|0.41|ENSG00000261236|chr8:144289298-144289298|G/-|frameshift_variant	BOP1|p.L36Sfs*154|1|0.41|ENSG00000261236|chr8:144289298-144289298|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	353.5655822753906	3	353.88206	1058.62435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.549	1	10.549	10.049	11.049	0								0	0	0	0.8837	1	3246	3246		1.4819	0	1				28589	273	18183	18278	27469	27469					0.09738244636241689
RRTETVQKL	9	Unmodified	_RRTETVQKL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	HCT116MG_D190212_S1	1	377.5596923828125	3	377.559528	1129.65676	-0.21787	-8.2258E-05	0.64923	0.00024512	0.43136	0.00016286	377.55965231493525	18.897	0.26068	18.897	18.766	19.027	0					8	4	3	0	0	0	0.12205	1	6552	6552		42.312	6.7002	1	4778400			28590	6419	18184	18279	27470	27470					0.0971131052021974
RRTETVQKL	9	Unmodified	_RRTETVQKL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	HCT116MG_D190212_S2	2	377.559326171875	3	377.559528	1129.65676	-0.19735	-7.451E-05	-0.029659	-1.1198E-05	-0.22701	-8.5708E-05	377.5594352344759	19.804	0.1554	19.429	19.351	19.506	-0.37503					4	2	2	0	0	0	0.077982	1	6913	6913		49.527	10.912	1	17984000			28591	6419	18184	18279	27471	27471					0.0971131052021974
RRTLRKPK	8	Unmodified	_RRTLRKPK_					0	0	0		ENSG00000270765|ENST00000604641|GAS2L2	ENSG00000270765|ENST00000604641|GAS2L2	ENSG00000270765|ENST00000604641|GAS2L2	MSMS	HCT116MG_D190212_S1	1	352.23809814453125	3	352.23672	1053.68833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4631	1	7.4631	6.9631	7.9631	0								0	0	0	0.8837	1	2255	2255		1.4819	0	1				28592	6660	18185	18280	27472	27472					0.16363348064828642
RRTTRRWKRWF	11	Unmodified	_RRTTRRWKRWF_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	HCT116MG_D190212_S1	1	824.974365234375	2	824.974016	1647.93348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.117	1	36.117	35.617	36.617	0								0	0	0	0.96208	1	13457	13457		0	0	1				28593	9527	18186	18281	27473	27473					0.13543021527652854
RRVALKMW	8	Unmodified	_RRVALKMW_					0	0	0		TLR3|p.N494Mfs*15|2|0.32|ENSG00000164342|chr4:186083163-186083163|A/-|frameshift_variant	TLR3|p.N494Mfs*15|2|0.32|ENSG00000164342|chr4:186083163-186083163|A/-|frameshift_variant	TLR3|p.N494Mfs*15|2|0.32|ENSG00000164342|chr4:186083163-186083163|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	353.88006591796875	3	353.879656	1058.61714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.54	1	10.54	10.04	11.04	0								0	0	0	0.8837	1	3242	3242		0.40072	0	1				28594	18271	18187	18282	27474	27474					0.0901751203580261
RRVAPSRPAAL	11	Unmodified	_RRVAPSRPAAL_					0	0	0			REV__nc|ENSG00000267080|Q495Z4|ASB16-AS1	REV__nc|ENSG00000267080|Q495Z4|ASB16-AS1	MSMS	HCT116MG_D190212_S1	1	597.3636474609375	2	597.364913	1192.71527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.181	1	52.181	51.681	52.681	0								0	0	0	0.95636	1	19952	19952		2.9952	0.26005	1		+		28595	16649	18188	18283	27475	27475					0.12662411885366964
RRVEFFRK	8	Unmodified	_RRVEFFRK_					0	0	0			REV__ENST00000543425.1_1_12:124075023-124081273:+|nuORF	REV__ENST00000543425.1_1_12:124075023-124081273:+|nuORF	MSMS	HCT116MG_D190212_S1	1	379.89422607421875	3	379.892842	1136.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3114	1	1.3114	0.81139	1.8114	0								0	0	0	0.8837	1	402	402		0.40072	0	1		+		28596	10936	18189	18284	27476	27476					0.09383355310887964
RRVEFFRK	8	Unmodified	_RRVEFFRK_					0	0	0			REV__ENST00000543425.1_1_12:124075023-124081273:+|nuORF	REV__ENST00000543425.1_1_12:124075023-124081273:+|nuORF	MSMS	HCT116MG_D190212_S4	4	379.8941955566406	3	379.892842	1136.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.37425	1	0.10968	-0.39032	0.60968	-0.26456								0	0	0	0.8837	1	128	128		0.40072	0	1		+		28597	10936	18189	18284	27477	27477					0.09383355310887964
RRVFKKWKWL	10	Unmodified	_RRVFKKWKWL_					0	0	0			REV__ENST00000429378.5_3_16:242971-256079:-|nuORF	REV__ENST00000429378.5_3_16:242971-256079:-|nuORF	MSMS	HCT116MG_D190212_S4	4	482.63433837890625	3	482.966341	1445.87719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.836	1	56.536	56.036	57.036	-0.3004								0	0	0	0.97045	1	21317	21317		0.15932	0.064481	1		+		28598	15574	18190	18285	27478	27478					0.1720900063830868
RRVKKSRSK	9	Unmodified	_RRVKKSRSK_					0	0	0			REV__nc|ENSG00000115750|Q53T94-3|TAF1B	REV__nc|ENSG00000115750|Q53T94-3|TAF1B	MSMS	HCT116MG_D190212_S3	3	382.2526550292969	3	382.251029	1143.73126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.348	1	62.116	61.616	62.616	-0.23129								0	0	0	0.76998	1	23816	23816		0.96228	0	1		+		28599	11556	18191	18286	27479	27479					0.16514118122267973
RRVKRDAKHLL	11	Unmodified	_RRVKRDAKHLL_					0	0	0			REV__ENST00000554615.1_1_14:39509818-39510055:-|nuORF	REV__ENST00000554615.1_1_14:39509818-39510055:-|nuORF	MSMS	HCT116MG_D190212_S3	3	696.436279296875	2	696.438944	1390.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.36	1	59.1	58.6	59.6	-0.26036								0	0	0	0.96003	1	22603	22603		1.0715	0.76443	1		+		28600	16453	18192	18287	27480	27480					0.18353723139216527
RRVLIGKG	8	Unmodified	_RRVLIGKG_					0	0	0		ENST00000462927.5_1_22:37699411-37707619:+|nuORF	ENST00000462927.5_1_22:37699411-37707619:+|nuORF	ENST00000462927.5_1_22:37699411-37707619:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	449.8012390136719	2	449.800886	897.587219	0.20676	9.3E-05	0.36421	0.00016382	0.57097	0.00025682	449.8010437764246	58.24	0.15176	58.07	57.994	58.146	-0.1703					4	2	2	0	0	0	0.88026	1	22532	22532		0	0	1	29304000			28601	8070	18193	18288	27481	27481					0.13432896362155589
RRVRGKSGGR	10	Unmodified	_RRVRGKSGGR_					0	0	0			REV__ENST00000474518.1_1_6:10527835-10528955:+|nuORF	REV__ENST00000474518.1_1_6:10527835-10528955:+|nuORF	MSMS	HCT116MG_D190212_S1	1	376.8991394042969	3	376.898878	1127.67481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.0056	1	6.0056	5.5056	6.5056	0								0	0	0	0.97116	1	1810	1810		0	0	1		+		28602	15899	18194	18289	27482	27482					0.11607490285632593
RRVVRRPVL	9	Unmodified	_RRVVRRPVL_					0	0	0			REV__ENST00000544456.5_2_12:7342308-7342639:+|nuORF	REV__ENST00000544456.5_2_12:7342308-7342639:+|nuORF	MSMS	HCT116MG_D190212_S2	2	384.2604064941406	3	384.259636	1149.75708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.363	1	43.289	42.789	43.789	-0.073376								0	0	0	0.76948	1	16439	16439		2.7352	0	1		+		28603	16387	18195	18290	27483	27483					0.18819012364565424
RRWEQALTF	9	Unmodified	_RRWEQALTF_					0	0	0		nc|ENSG00000180488|Q8NAN2-2|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF;ENSG00000180488|ENST00000370791|MIGA1	nc|ENSG00000180488|Q8NAN2-2|MIGA1	nc|ENSG00000180488|Q8NAN2-2|MIGA1	MULTI-MSMS	HCT116MG_D190212_S2	2	603.822265625	2	603.822547	1205.63054	0.85567	0.00051667	-0.33415	-0.00020177	0.52152	0.00031491	603.8219279695104	44.54	0.26079	44.455	44.274	44.535	-0.084797					9	4	3	0	0	0	0.082877	1	16920	16920		61.602	6.3673	1	49937000			28604	9565	18196	18291	27484	27484					0.03595041348717132
RRWEQALTF	9	Unmodified	_RRWEQALTF_					0	0	0		nc|ENSG00000180488|Q8NAN2-2|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF;ENSG00000180488|ENST00000370791|MIGA1	nc|ENSG00000180488|Q8NAN2-2|MIGA1	nc|ENSG00000180488|Q8NAN2-2|MIGA1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	603.822547	1205.63054	0.3837	0.00023169	0.34242	0.00020676	0.72612	0.00043845	603.8224976013131	44.559	0.15715	44.559	44.464	44.621	0	0.052026	0.00058047	NaN	61.602	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6729200			28605	9565	18196	18291							0.03595041348717132
RRWGWEWRRKR	11	Unmodified	_RRWGWEWRRKR_					0	0	0			REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MSMS	HCT116MG_D190212_S1	1	836.4627685546875	2	836.463816	1670.91308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.082	1	21.082	20.582	21.582	0								0	0	0	0.96149	1	7400	7400		0.30703	0.30703	1		+		28606	15749	18197	18292	27485	27485					0.1044585086783627
RRWKKLNWRRH	11	Unmodified	_RRWKKLNWRRH_					0	0	0		ENST00000550078.2_2_1:203816644-203816719:+|nuORF	ENST00000550078.2_2_1:203816644-203816719:+|nuORF	ENST00000550078.2_2_1:203816644-203816719:+|nuORF	MSMS	HCT116MG_D190212_S1	1	818.4802856445312	2	818.482008	1634.94946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.051	1	36.051	35.551	36.551	0								0	0	0	0.96208	1	13430	13430		0	0	1				28607	8750	18198	18293	27486	27486					0.15738727764551186
RRWLFLLP	8	Unmodified	_RRWLFLLP_					0	0	0			REV__ENST00000554401.1_1_14:102551307-102551657:-|nuORF	REV__ENST00000554401.1_1_14:102551307-102551657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	550.8416137695312	2	550.840011	1099.66547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.166	1	39.166	38.666	39.666	0								0	0	0	0.8837	1	14685	14685		8.5933	0	1		+		28608	16447	18199	18294	27487	27487					0.11962328947356582
RRWNLFRYH	9	Unmodified	_RRWNLFRYH_					0	0	0			REV__ENSG00000167778|ENST00000301463|SPRYD3	REV__ENSG00000167778|ENST00000301463|SPRYD3	MSMS	HCT116MG_D190212_S3	3	450.11383056640625	3	449.910895	1346.71086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.20503	1	0.26594	-0.23406	0.76594	0.060905								0	0	0	0.77018	1	78	78		0.26902	0.1097	1		+		28609	13168	18200	18295	27488	27488					0.05136947462460739
RRWRRPWDPRK	11	Unmodified	_RRWRRPWDPRK_					0	0	0		ENST00000418337.6_2_7:151292537-151329253:-|nuORF;ENST00000493872.5_1_7:151328836-151329256:-|nuORF;ENST00000287878.8_2_7:151292537-151372615:-|nuORF;ENST00000476632.1_3_7:151292537-151329805:-|nuORF	ENST00000418337.6_2_7:151292537-151329253:-|nuORF	ENST00000418337.6_2_7:151292537-151329253:-|nuORF	MSMS	HCT116MG_D190212_S2	2	537.2505493164062	3	536.97467	1607.90218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.269	1	48.125	47.625	48.625	-0.1437								0	0	0	0.96208	1	18436	18436		0	0	1				28610	6953	18201	18296	27489	27489					0.12254448493581549
RRWRRRRRRL	10	Unmodified	_RRWRRRRRRL_					0	0	0		ENST00000492275.5_1_21:38445580-38480706:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MSMS	HCT116MG_D190212_S3	3	523.0013427734375	3	523.001553	1565.98283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.767	1	56.483	55.983	56.983	-0.28367								0	0	0	0.97116	1	21558	21558		0	0	1				28611	7294	18202	18297	27490	27490					0.2224777432713836
RRWRRSRPLPK	11	Unmodified	_RRWRRSRPLPK_					0	0	0			REV__ENST00000427153.1_1_7:73149705-73150146:+|nuORF	REV__ENST00000427153.1_1_7:73149705-73150146:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	754.4639892578125	2	754.463284	1506.91202	0.71414	0.00053879	0.21579	0.00016281	0.92993	0.0007016	754.4633985476606	61.045	1.5514	61.045	60.749	62.3	0					53	29	3	0	0	0	0.74191	1	24051	24051		0	0	1	18870000	+		28612	15561	18203	18298	27491	27491					0.17883636498959277
RRWVRLRRRDL	11	Unmodified	_RRWVRLRRRDL_					0	0	0		ENSG00000135636|ENST00000410020|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-7|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-15|DYSF;DYSF|p.F1960Lfs*6|1|0.23|ENSG00000135636|chr2:71679165-71679165|T/-|frameshift_variant;DYSF|p.F1290Lfs*55|1|0.1|ENSG00000135636|chr2:71601522-71601522|T/-|frameshift_variant	ENSG00000135636|ENST00000410020|DYSF	ENSG00000135636|ENST00000410020|DYSF	MSMS	HCT116MG_D190212_S3	3	527.9959106445312	3	527.993953	1580.96003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.318	1	51.006	50.506	51.506	-0.31166								0	0	0	0.9619	1	19373	19373		0.094841	0.011491	1				28613	3365	18204	18299	27492	27492					0.19278710418984701
RRWWFYLFILQ	11	Unmodified	_RRWWFYLFILQ_					0	0	0			REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF	REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	543.301025390625	3	543.301389	1626.88234	0.51977	0.00028239	-1.2742	-0.00069228	-0.75443	-0.00040988	543.3008510498552	27.687	0.20709	27.687	27.541	27.748	0					5	3	2	0	0	0	0.74191	1	10073	10073		0.45452	0.45452	1	8607100	+		28614	15868	18205	18300	27493	27493					0.09397259710249273
RRYHLESRWKL	11	Unmodified	_RRYHLESRWKL_					0	0	0			REV__ENST00000357444.10_1_1:174128787-174190113:+|nuORF	REV__ENST00000357444.10_1_1:174128787-174190113:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2915649414062	3	515.291664	1542.85316	0.40931	0.00021091	-0.65813	-0.00033913	-0.24882	-0.00012821	515.6254695063388	21.411	0.31678	21.411	21.173	21.489	0					9	5	3	0	0	0	0.74191	1	7541	7541		2.6312	1.4164	1	13143000	+		28615	15053	18206	18301	27494	27494					0.10345115413974781
RRYKPREK	8	Unmodified	_RRYKPREK_					0	0	0		MYLK4|p.E336Dfs*7|1|0.06|ENSG00000145949|chr6:2678252-2678252|C/-|frameshift_variant;ENSG00000145949|ENST00000274643|MYLK4;nc|ENSG00000140795|Q32MK0-4|MYLK3;ENSG00000140795|ENST00000394809|MYLK3	MYLK4|p.E336Dfs*7|1|0.06|ENSG00000145949|chr6:2678252-2678252|C/-|frameshift_variant	MYLK4|p.E336Dfs*7|1|0.06|ENSG00000145949|chr6:2678252-2678252|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1132.6689453125	1	1132.66979	1131.66251	0.70224	0.00079541	-0.71138	-0.00080576	-0.0091397	-1.0352E-05	1132.668623390151	52.922	0.30785	52.922	52.794	53.102	0					8	5	3	0	0	0	0.83066	1	20262	20262		7.9102	0.3012	1	63278000			28616	3686	18207	18302	27495	27495					0.1019445382255526
RRYPIARVF	9	Unmodified	_RRYPIARVF_					0	0	0		GOLGA5|p.L691P|1|0.38|ENSG00000066455|chr14:92837406-92837406|T/C|missense_variant;GOLGA5|p.M705Ifs*10|1|0.1|ENSG00000066455|chr14:92837439-92837440|-/TA|frameshift_variant;ENSG00000066455|ENST00000163416|GOLGA5	GOLGA5|p.L691P|1|0.38|ENSG00000066455|chr14:92837406-92837406|T/C|missense_variant	GOLGA5|p.L691P|1|0.38|ENSG00000066455|chr14:92837406-92837406|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	393.27508544921875	3	393.236608	1176.688	0.30569	0.00012021	-0.081551	-3.2069E-05	0.22414	8.814E-05	393.2365101953644	34.532	0.46532	34.356	34.124	34.589	-0.17512					10	8	2	0	0	0	0.26696	1	12885	12885		5.2969	3.3905	1	7560000			28617	1172	18208	18303	27496	27496					0.1067192834495927
RRYQKSTEL	9	Unmodified	_RRYQKSTEL_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000168148|ENST00000366696|H3-4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S1	1	394.2189636230469	3	394.219283	1179.63602	0.088509	3.4892E-05	-0.30846	-0.0001216	-0.21995	-8.6708E-05	394.2190425367381	17.698	0.20835	17.698	17.568	17.776	0					6	3	2	0	0	0	0.045679	1	6042	6042		76.825	38.21	1	20319000			28618	3188	18209	18304	27497	27497					0.05338720140593978
RRYQKSTEL	9	Unmodified	_RRYQKSTEL_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000168148|ENST00000366696|H3-4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S1	1	590.825439453125	2	590.825286	1179.63602	0.81103	0.00047917	-0.094736	-5.5972E-05	0.71629	0.0004232	590.8252579874556	17.698	0.2604	17.698	17.568	17.828	0					9	4	3	0	0	0	0.20521	1	6047	6047		36.506	13.77	1	12046000			28619	3188	18209	18304	27498	27498					0.05338720140593978
RRYQKSTEL	9	Unmodified	_RRYQKSTEL_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000168148|ENST00000366696|H3-4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S2	2	590.8253173828125	2	590.825286	1179.63602	0.12711	7.5097E-05	-0.2039	-0.00012047	-0.076794	-4.5372E-05	590.8251735768065	18.601	0.36404	18.238	18.061	18.425	-0.36325					14	6	3	0	0	0	0.014973	1	6407	6407		121.53	77.552	1	83783000			28620	3188	18209	18304	27499	27499					0.05338720140593978
RRYQKSTEL	9	Unmodified	_RRYQKSTEL_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000168148|ENST00000366696|H3-4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S2	2	394.21917724609375	3	394.219283	1179.63602	-0.41762	-0.00016464	0.20954	8.2605E-05	-0.20808	-8.2031E-05	394.219352589053	18.593	0.4162	18.23	18.061	18.477	-0.36325					16	7	3	0	0	0	0.094138	1	6410	6410		59.368	20.754	1	55497000			28621	3188	18209	18304	27500	27500					0.05338720140593978
RRYQRHYYYHR	11	Unmodified	_RRYQRHYYYHR_					0	0	0			REV__NDUFB10|p.Y55H|1|0.33|ENSG00000140990|chr16:1961185-1961185|T/C|missense_variant	REV__NDUFB10|p.Y55H|1|0.33|ENSG00000140990|chr16:1961185-1961185|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	849.42626953125	2	849.429639	1696.84472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.976	1	51.976	51.476	52.476	0								0	0	0	0.96157	1	19869	19869		0.26902	0.26902	1		+		28622	17344	18210	18305	27501	27501					0.024175614973728443
RSAGVEQLMF	10	Unmodified	_RSAGVEQLMF_					0	0	0		ENSG00000145945|ENST00000648326|FAM50B	ENSG00000145945|ENST00000648326|FAM50B	ENSG00000145945|ENST00000648326|FAM50B	MULTI-SECPEP	HCT116MG_D190212_S1	1	568.78857421875	2	569.289691	1136.56483	0.48905	0.00027841	0.48787	0.00027774	0.97692	0.00055615	569.2898468015552	33.276	0.31076	33.276	33.089	33.4	0					12	5	3	0	0	0	0.29716	1	12328	12328		20.415	5.5763	1	28835000			28623	3934	18211	18306	27502	27502					0.0020088411154119967
RSALGKRLRII	11	Unmodified	_RSALGKRLRII_					0	0	0			REV__nc|ENSG00000135930|O60573-2|EIF4E2	REV__nc|ENSG00000135930|O60573-2|EIF4E2	MSMS	HCT116MG_D190212_S4	4	428.2853698730469	3	428.285851	1281.83572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.349	1	57.055	56.555	57.555	-0.29465								0	0	0	0.9613	1	21524	21524		0.40827	0	1		+		28624	10448	18212	18307	27503	27503					0.20607819878978262
RSARRKRKKHR	11	Unmodified	_RSARRKRKKHR_					0	0	0		TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant;TAF1L|p.F683Lfs*27|1|0.39|ENSG00000122728|chr9:32633531-32633531|A/-|frameshift_variant;TAF1L|p.A852Pfs*14|1|0.21|ENSG00000122728|chr9:32633027-32633027|T/-|frameshift_variant;TAF1L|p.F928Lfs*13|1|0.25|ENSG00000122728|chr9:32632796-32632796|A/-|frameshift_variant;TAF1L|p.E1124*|1|0.35|ENSG00000122728|chr9:32632210-32632211|-/A|frameshift_variant;TAF1L|p.F1231Lfs*20|1|0.42|ENSG00000122728|chr9:32631887-32631887|A/-|frameshift_variant;ENSG00000122728|ENST00000242310|TAF1L	TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant	TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	493.6504821777344	3	493.650297	1477.92906	0.36436	0.00017986	-0.11596	-5.7245E-05	0.24839	0.00012262	493.6501737287056	56.145	0.30899	56.145	55.964	56.273	0					14	5	4	0	0	0	0.74191	1	21579	21579		0.094841	0.011491	1	380720000			28625	18254	18213	18308	27504	27504					0.20921557104770727
RSCCPQEGD	9	Unmodified	_RSCCPQEGD_					0	0	0			REV__ENSG00000163945|ENST00000389851|UVSSA	REV__ENSG00000163945|ENST00000389851|UVSSA	MULTI-MSMS	HCT116MG_D190212_S2	2	497.6898498535156	2	497.689484	993.364414	0.26658	0.00013268	0.23625	0.00011758	0.50284	0.00025026	497.68949529392205	15.789	0.3655	15.454	15.324	15.689	-0.33451					9	6	2	0	0	0	0.55223	1	5301	5301		13.906	3.0821	1	2472100	+		28626	12963	18214	18309	27505	27505					-0.13253333547572765
RSDDSGHLY	9	Unmodified	_RSDDSGHLY_					0	0	0		ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	525.2357177734375	2	525.23597	1048.45739	0.36211	0.00019019	0.10026	5.2661E-05	0.46237	0.00024285	525.2359709012326	22.507	0.20875	22.507	22.376	22.585	0					8	3	3	0	0	0	0.02327	1	7986	7986		93.166	66.825	1	19093000			28627	8787	18215	18310	27506	27506					-0.06490369498328619
RSDDSGHLY	9	Unmodified	_RSDDSGHLY_					0	0	0		ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	525.236083984375	2	525.23597	1048.45739	0.35164	0.0001847	-0.030614	-1.608E-05	0.32103	0.00016862	525.2358481198926	23.085	0.31224	22.7	22.518	22.83	-0.3852					10	5	3	0	0	0	0.014023	1	8211	8211		103.42	81.673	1	50463000			28628	8787	18215	18310	27507	27507					-0.06490369498328619
RSDDTWDICTT	11	Unmodified	_RSDDTWDICTT_					0	0	0			REV__ENSG00000241945|ENST00000291576|PWP2	REV__ENSG00000241945|ENST00000291576|PWP2	MULTI-SECPEP	HCT116MG_D190212_S2	2	437.8532409667969	3	438.18732	1311.54013	-0.1286	-5.6352E-05	0.17742	7.7745E-05	0.048822	2.1393E-05	438.1877521388268	30.622	0.25683	30.347	30.191	30.448	-0.27496					11	4	3	0	0	0	0.36241	1	11281	11281		5.5233	4.6784	1	17664000	+		28629	14355	18216	18311	27508	27508					-0.1031784055251137
RSDELTRHY	9	Unmodified	_RSDELTRHY_					0	0	0		ENSG00000127528|ENST00000248071|KLF2;KLF12|p.A359T|1|0.26|ENSG00000118922|chr13:73695624-73695624|C/T|missense_variant;nc|ENSG00000118263|O75840-5|KLF7;ENSG00000119138|ENST00000377126|KLF9;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;nc|ENSG00000102554|Q13887-2|KLF5;ENSG00000105610|ENST00000264834|KLF1;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4	ENSG00000127528|ENST00000248071|KLF2;nc|ENSG00000136826|O43474-4|KLF4	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	HCT116MG_D190212_S1	1	392.86309814453125	3	392.863388	1175.56833	-0.18082	-7.1037E-05	0.15902	6.2473E-05	-0.021798	-8.5636E-06	392.8633969488763	19.73	0.31364	19.73	19.548	19.861	0					14	5	4	0	0	0	0.0034268	1	6851	6851		153.7	102.28	1	62725000			28630	2970;3436	18217	18312	27509	27509					-0.01242729790260455
RSDELTRHY	9	Unmodified	_RSDELTRHY_					0	0	0		ENSG00000127528|ENST00000248071|KLF2;KLF12|p.A359T|1|0.26|ENSG00000118922|chr13:73695624-73695624|C/T|missense_variant;nc|ENSG00000118263|O75840-5|KLF7;ENSG00000119138|ENST00000377126|KLF9;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;nc|ENSG00000102554|Q13887-2|KLF5;ENSG00000105610|ENST00000264834|KLF1;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4	ENSG00000127528|ENST00000248071|KLF2;nc|ENSG00000136826|O43474-4|KLF4	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	HCT116MG_D190212_S1	1	588.791748046875	2	588.791444	1175.56833	0.52789	0.00031082	-0.19105	-0.00011249	0.33684	0.00019833	588.7914190336024	19.73	0.20903	19.73	19.6	19.809	0					8	3	3	0	0	0	0.0068462	1	6859	6859		121.5	73.755	1	28308000			28631	2970;3436	18217	18312	27510	27510					-0.01242729790260455
RSDELTRHY	9	Unmodified	_RSDELTRHY_					0	0	0		ENSG00000127528|ENST00000248071|KLF2;KLF12|p.A359T|1|0.26|ENSG00000118922|chr13:73695624-73695624|C/T|missense_variant;nc|ENSG00000118263|O75840-5|KLF7;ENSG00000119138|ENST00000377126|KLF9;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;nc|ENSG00000102554|Q13887-2|KLF5;ENSG00000105610|ENST00000264834|KLF1;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4	ENSG00000127528|ENST00000248071|KLF2;nc|ENSG00000136826|O43474-4|KLF4	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	HCT116MG_D190212_S2	2	588.7916870117188	2	588.791444	1175.56833	0.52695	0.00031026	-0.0014395	-8.4755E-07	0.52551	0.00030942	588.7914129358683	20.429	0.31866	20.05	19.917	20.236	-0.37949					11	5	3	0	0	0	0.0045072	1	7141	7141		143.21	87.71	1	103020000			28632	2970;3436	18217	18312	27511	27511					-0.01242729790260455
RSDELTRHY	9	Unmodified	_RSDELTRHY_					0	0	0		ENSG00000127528|ENST00000248071|KLF2;KLF12|p.A359T|1|0.26|ENSG00000118922|chr13:73695624-73695624|C/T|missense_variant;nc|ENSG00000118263|O75840-5|KLF7;ENSG00000119138|ENST00000377126|KLF9;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7;nc|ENSG00000102554|Q13887-2|KLF5;ENSG00000105610|ENST00000264834|KLF1;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4	ENSG00000127528|ENST00000248071|KLF2;nc|ENSG00000136826|O43474-4|KLF4	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	HCT116MG_D190212_S2	2	392.8634338378906	3	392.863388	1175.56833	0.029871	1.1735E-05	0.037041	1.4552E-05	0.066912	2.6287E-05	392.86332816365694	20.429	0.31816	20.05	19.865	20.183	-0.37949					15	5	4	0	0	0	0.0019891	1	7142	7142		160.97	118.66	1	91982000			28633	2970;3436	18217	18312	27512	27512					-0.01242729790260455
RSDHLTKHY	9	Unmodified	_RSDHLTKHY_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	HCT116MG_D190212_S2	2	386.87896728515625	3	386.200111	1155.5785	-0.13868	-5.3558E-05	0.042725	1.65E-05	-0.095955	-3.7058E-05	386.2000862588067	15.58	0.15613	15.253	15.175	15.331	-0.32684					4	2	2	0	0	0	0.068828	2	5198	5198;5216		53.47	40.614	1	2737400			28634	4908	18218	18313	27513;27514	27513					0.006938779349866309
RSDHLTKHY	9	Unmodified	_RSDHLTKHY_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	HCT116MG_D190212_S2	2	578.796875	2	578.796529	1155.5785	0.29925	0.0001732	0.56147	0.00032497	0.86071	0.00049818	578.7967327031033	15.615	0.2084	15.288	15.175	15.384	-0.32684					5	3	2	0	0	0	0.41422	1	5215	5215		21.799	10.976	1	4915300			28635	4908	18218	18313	27515	27515					0.006938779349866309
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	525.2542114257812	2	525.254163	1048.49377	0.56852	0.00029862	-0.73756	-0.00038741	-0.16904	-8.8791E-05	525.2536626225618	29.086	0.46984	29.086	28.903	29.373	0					17	8	3	0	0	0	0.51928	1	10618	10618		44.392	22.645	1	39550000			28636	5720	18219	18314	27516	27516					-0.028534926015936435
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	525.25390625	2	525.254163	1048.49377	0.71973	0.00037804	-0.34493	-0.00018118	0.3748	0.00019686	525.2539384624635	29.564	0.36154	29.263	29.082	29.444	-0.30095					18	6	3	0	0	0	0.053212	1	10815	10815		97.741	61.614	1	176590000			28637	5720	18219	18314	27517	27517					-0.028534926015936435
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1049.501220703125	1	1049.50105	1048.49377	1.0002	0.0010497	-0.47774	-0.00050139	0.52243	0.00054829	1049.500462237177	29.551	0.30997	29.25	29.082	29.392	-0.30095					9	5	2	0	0	0	0.032948	1	10842	10842		107.56	67.324	1	33107000			28638	5720	18219	18314	27518	27518					-0.028534926015936435
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2542724609375	2	525.254163	1048.49377	0.51402	0.00026999	0.020183	1.0601E-05	0.53421	0.00028059	525.2540820858032	29.554	0.47478	29.318	29.135	29.61	-0.23655					25	8	4	0	0	0	0.10532	1	10743	10743		88.364	52.237	1	63106000			28639	5720	18219	18314	27519	27519					-0.028534926015936435
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	525.7554321289062	2	525.254163	1048.49377	0.36299	0.00019066	0.048448	2.5448E-05	0.41144	0.00021611	525.2541710845139	29.72	0.46798	29.371	29.189	29.657	-0.34921					17	8	3	0	0	0	0.2731	1	10748	10748		67.081	37.999	1	17774000			28640	5720	18219	18314	27520	27520					-0.028534926015936435
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1049.50105	1048.49377	0.72856	0.00076463	0.56791	0.00059602	1.2965	0.0013606	1049.5010235181044	29.554	0.2088	29.318	29.187	29.396	-0.23655	0.033727	0.00099634	NaN	107.56	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3047600			28641	5720	18219	18314							-0.028534926015936435
RSDPNSESLY	10	Unmodified	_RSDPNSESLY_					0	0	0		ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	ENSG00000138593|ENST00000559471|SECISBP2L	MULTI-MSMS	HCT116MG_D190212_S3	3	584.2681274414062	2	584.267467	1166.52038	0.60867	0.00035563	0.46207	0.00026997	1.0707	0.0006256	584.2676412475319	28.892	0.31256	28.671	28.525	28.838	-0.22196					11	5	3	0	0	0	0.52513	1	10508	10508		33.445	7.1768	1	3193700			28642	3566	18220	18315	27521	27521					-0.056218485009367214
RSDPTSYAGY	10	Unmodified	_RSDPTSYAGY_					0	0	0		nc|ENSG00000069849|P54709-2|ATP1B3;ATP1B3|p.K221Nfs*26|1|0.39|ENSG00000069849|chr3:141922052-141922052|A/-|frameshift_variant;ENST00000465172.5_1_3:141595540-141640837:+|nuORF;ENSG00000069849|ENST00000286371|ATP1B3	nc|ENSG00000069849|P54709-2|ATP1B3	nc|ENSG00000069849|P54709-2|ATP1B3	MULTI-MSMS	HCT116MG_D190212_S1	1	558.7518310546875	2	558.751453	1115.48835	0.62042	0.00034666	-0.34599	-0.00019332	0.27443	0.00015334	558.7512764028332	28.21	0.36838	28.21	28.06	28.429	0					9	6	2	0	0	0	0.13161	2	10287	10254;10287		67.838	34.393	1	6616600			28643	223	18221	18316	27522;27523	27523					-0.06477216184111967
RSDPYVKSY	9	Unmodified	_RSDPYVKSY_					0	0	0		nc|ENSG00000142765|Q8IYJ3-2|SYTL1;ENSG00000142765|ENST00000616558|SYTL1	nc|ENSG00000142765|Q8IYJ3-2|SYTL1	nc|ENSG00000142765|Q8IYJ3-2|SYTL1	MULTI-MSMS	HCT116MG_D190212_S1	1	557.7802124023438	2	557.780013	1113.54547	0.40858	0.0002279	0.034897	1.9465E-05	0.44347	0.00024736	557.7800773561275	22.924	0.20807	22.924	22.793	23.001	0					5	3	2	0	0	0	0.10554	1	8154	8154		57.108	7.1746	1	10171000			28644	3775	18222	18317	27524	27524					-0.006757489077244827
RSDPYVKSY	9	Unmodified	_RSDPYVKSY_					0	0	0		nc|ENSG00000142765|Q8IYJ3-2|SYTL1;ENSG00000142765|ENST00000616558|SYTL1	nc|ENSG00000142765|Q8IYJ3-2|SYTL1	nc|ENSG00000142765|Q8IYJ3-2|SYTL1	MULTI-MSMS	HCT116MG_D190212_S2	2	557.77978515625	2	557.780013	1113.54547	0.30006	0.00016737	-0.21145	-0.00011795	0.088601	4.942E-05	557.7799102363587	23.5	0.25962	23.117	22.988	23.247	-0.38324					7	4	2	0	0	0	0.0068642	1	8386	8386		121.35	57.385	1	32466000			28645	3775	18222	18317	27525	27525					-0.006757489077244827
RSDRREDYY	9	Unmodified	_RSDRREDYY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	630.2927856445312	2	630.291808	1258.56906	0.58445	0.00036838	-0.027929	-1.7604E-05	0.55652	0.00035077	630.2919144547492	19.58	0.20877	19.58	19.495	19.704	0					7	3	3	0	0	0	0.3453	1	6826	6826		33.445	33.445	1	4357100			28646	5945	18223	18318	27526	27526					-0.04987935141184607
RSDRREDYY	9	Unmodified	_RSDRREDYY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MSMS	HCT116MG_D190212_S1	1	420.5302734375	3	420.530297	1258.56906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.643	1	19.643	19.143	20.143	0								0	0	0	0.71477	1	6823	6823		18.373	8.0579	1				28647	5945	18223	18318	27527	27527					-0.04987935141184607
RSDRREDYY	9	Unmodified	_RSDRREDYY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	630.2920532226562	2	630.291808	1258.56906	0.42127	0.00026553	-0.046345	-2.9211E-05	0.37493	0.00023631	630.2917828586186	20.323	0.36931	19.943	19.761	20.13	-0.37949					18	6	4	0	0	0	0.005219	1	7098	7098		148.27	68.672	1	101620000			28648	5945	18223	18318	27528	27528					-0.04987935141184607
RSDRREDYY	9	Unmodified	_RSDRREDYY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	420.5304260253906	3	420.530297	1258.56906	-0.025648	-1.0786E-05	0.19205	8.0764E-05	0.1664	6.9978E-05	420.53034638453823	20.323	0.31577	19.943	19.761	20.076	-0.37949					15	5	4	0	0	0	0.029255	1	7101	7101		87.123	57.686	1	72709000			28649	5945	18223	18318	27529	27529					-0.04987935141184607
RSDRREDYY	9	Unmodified	_RSDRREDYY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	630.2922973632812	2	630.291808	1258.56906	0.42422	0.00026738	-0.071604	-4.5131E-05	0.35262	0.00022225	630.2918583241003	19.149	0.31191	19.218	19.083	19.395	0.069157					11	5	3	0	0	0	0.39716	1	6575	6575		29.841	11.694	1	4555100			28650	5945	18223	18318	27530	27530					-0.04987935141184607
RSDRREDYY	9	Unmodified	_RSDRREDYY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;USP7|p.T440Nfs*4|1|0.17|ENSG00000187555|chr16:8906535-8906536|-/T|frameshift_variant	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MSMS	HCT116MG_D190212_S3	3	420.53033447265625	3	420.530297	1258.56906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.21	1	19.277	18.777	19.777	0.066525								0	0	0	0.72531	1	6573	6573		17.863	9.9178	1				28651	5945	18223	18318	27531	27531					-0.04987935141184607
RSDSEIIGY	9	Unmodified	_RSDSEIIGY_					0	0	0		USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant;USO1|p.I920Sfs*9|1|0.08|ENSG00000138768|chr4:75812332-75812333|-/GAGCTTT|frameshift_variant;ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	USO1|p.K919Tfs*8|1|0.08|ENSG00000138768|chr4:75812331-75812332|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	520.2562866210938	2	520.256371	1038.49819	0.49602	0.00025806	0.37091	0.00019297	0.86693	0.00045103	520.2564091969803	36.019	0.26031	36.019	35.89	36.15	0					7	4	2	0	0	0	0.21258	1	13431	13431		39.95	1.9757	1	7684700			28652	3586	18224	18319	27532	27532					-0.019520281786981286
RSDSYVELSQY	11	Unmodified	_RSDSYVELSQY_					0	0	0		nc|ENSG00000114503|P52298-3|NCBP2;ENSG00000114503|ENST00000321256|NCBP2;ENST00000463783.1_1_3:196666081-196669374:-|nuORF;ENST00000468923.5_1_3:196664263-196669374:-|nuORF	nc|ENSG00000114503|P52298-3|NCBP2	nc|ENSG00000114503|P52298-3|NCBP2	MULTI-MSMS	HCT116MG_D190212_S1	1	673.8139038085938	2	673.814781	1345.61501	0.51409	0.0003464	-0.81356	-0.00054819	-0.29947	-0.00020179	673.8142248677738	39.372	0.15456	39.372	39.294	39.449	0					4	2	2	0	0	0	0.22509	1	14795	14795		72.59	39.145	1	10608000			28653	2423	18225	18320	27533	27533					-0.04397334749614856
RSDTEQEGKYY	11	Unmodified	_RSDTEQEGKYY_					0	0	0		THOC5|p.M138Sfs*25|1|0.03|ENSG00000100296|chr22:29542898-29542898|A/-|frameshift_variant;ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENSG00000100296|ENST00000490103|THOC5	THOC5|p.M138Sfs*25|1|0.03|ENSG00000100296|chr22:29542898-29542898|A/-|frameshift_variant	THOC5|p.M138Sfs*25|1|0.03|ENSG00000100296|chr22:29542898-29542898|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	688.3099975585938	2	688.309863	1374.60517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.952	1	21.952	21.452	22.452	0.00074577								0	0	0	0.92285	1	7676	7676		17.049	8.3032	1				28654	1685	18226	18321	27534	27534					-0.06714522754987229
RSDTPLIY	8	Unmodified	_RSDTPLIY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	482.758544921875	2	482.758549	963.502546	-0.00012907	-6.2311E-08	0.084884	4.0978E-05	0.084755	4.0916E-05	482.75854793916295	39.819	0.41592	39.819	39.605	40.021	0					19	7	3	0	0	0	0.052582	1	14937	14937		120.45	31.024	1	73107000			28655	6058	18227	18322	27535	27535					0.019334810348595965
RSDTPLIY	8	Unmodified	_RSDTPLIY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	964.5083618164062	1	964.509822	963.502546	0.52371	0.00050512	-0.15124	-0.00014587	0.37247	0.00035925	964.5097284224686	39.839	0.36369	39.839	39.657	40.021	0					13	6	3	0	0	0	0.045718	1	14958	14958		128.37	50.381	1	24833000			28656	6058	18227	18322	27536	27536					0.019334810348595965
RSDTPLIY	8	Unmodified	_RSDTPLIY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	482.75897216796875	2	482.758549	963.502546	-0.033345	-1.6098E-05	0.095391	4.6051E-05	0.062046	2.9953E-05	482.7585019986205	39.836	0.56862	39.763	39.533	40.102	-0.072838					28	10	4	0	0	0	0.052582	1	14969	14969		120.45	31.024	1	298710000			28657	6058	18227	18322	27537	27537					0.019334810348595965
RSDTPLIY	8	Unmodified	_RSDTPLIY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	964.5084228515625	1	964.509822	963.502546	0.41092	0.00039634	-0.14959	-0.00014428	0.26134	0.00025206	964.5095482429988	39.837	0.46473	39.764	39.533	39.998	-0.072838					18	8	3	0	0	0	0.045718	1	14990	14990		128.37	50.216	1	100710000			28658	6058	18227	18322	27538	27538					0.019334810348595965
RSDTPLIY	8	Unmodified	_RSDTPLIY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	482.7586669921875	2	482.758549	963.502546	0.033052	1.5956E-05	0.29548	0.00014264	0.32853	0.0001586	482.758585634296	40.161	0.5347	39.86	39.629	40.163	-0.30137					21	11	3	0	0	0	0.094591	1	14889	14889		96.285	28.941	1	32564000			28659	6058	18227	18322	27539	27539					0.019334810348595965
RSDTPLIY	8	Unmodified	_RSDTPLIY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	964.5103149414062	1	964.509822	963.502546	0.45885	0.00044257	-0.14472	-0.00013958	0.31413	0.00030298	964.5097018154122	40.126	0.36064	39.825	39.699	40.06	-0.30137					8	6	2	0	0	0	0.14283	1	14915	14915		85.272	36.926	1	6055600			28660	6058	18227	18322	27540	27540					0.019334810348595965
RSDTPLIY	8	Unmodified	_RSDTPLIY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S4	4	482.7586975097656	2	482.758549	963.502546	0.1952	9.4234E-05	0.18918	9.1327E-05	0.38438	0.00018556	482.75846838182906	40.294	0.34852	39.916	39.733	40.082	-0.37828					12	7	2	0	0	0	0.42581	1	14758	14758		47.749	13.646	1	5348700			28661	6058	18227	18322	27541	27541					0.019334810348595965
RSEEGRLYY	9	Unmodified	_RSEEGRLYY_					0	0	0		nc|ENSG00000100916|Q5PSV4-2|BRMS1L;ENSG00000100916|ENST00000216807|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	MULTI-MSMS	HCT116MG_D190212_S1	1	586.7889404296875	2	586.78837	1171.56219	0.87163	0.00051146	-0.42495	-0.00024936	0.44668	0.0002621	586.7881534077643	28.615	0.26461	28.615	28.482	28.746	0					9	4	3	0	0	0	0.043159	1	10437	10437		78.06	45.275	1	26851000			28662	1740	18228	18323	27542	27542					-0.0167324802175699
RSEEGRLYY	9	Unmodified	_RSEEGRLYY_					0	0	0		nc|ENSG00000100916|Q5PSV4-2|BRMS1L;ENSG00000100916|ENST00000216807|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	MULTI-MSMS	HCT116MG_D190212_S2	2	587.3004760742188	2	586.78837	1171.56219	0.56459	0.00033129	-0.97446	-0.0005718	-0.40987	-0.00024051	586.7881707147161	29.153	0.40925	28.837	28.709	29.119	-0.31613					14	7	3	0	0	0	0.019537	2	10673	10667;10673		96.936	56.986	1	238690000			28663	1740	18228	18323	27543;27544	27544					-0.0167324802175699
RSEEGRLYY	9	Unmodified	_RSEEGRLYY_					0	0	0		nc|ENSG00000100916|Q5PSV4-2|BRMS1L;ENSG00000100916|ENST00000216807|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	MULTI-MSMS	HCT116MG_D190212_S2	2	391.5279541015625	3	391.528005	1171.56219	0.11846	4.6379E-05	-0.36334	-0.00014226	-0.24488	-9.5878E-05	391.52800945230194	29.153	0.30601	28.837	28.709	29.015	-0.31613					7	5	2	0	0	0	0.07468	1	10691	10691		51.765	31.184	1	36119000			28664	1740	18228	18323	27545	27545					-0.0167324802175699
RSEEGRLYY	9	Unmodified	_RSEEGRLYY_					0	0	0		nc|ENSG00000100916|Q5PSV4-2|BRMS1L;ENSG00000100916|ENST00000216807|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	nc|ENSG00000100916|Q5PSV4-2|BRMS1L	MULTI-MSMS	HCT116MG_D190212_S4	4	586.7890625	2	586.78837	1171.56219	0.46739	0.00027426	0.10087	5.9188E-05	0.56826	0.00033345	586.7885880137043	29.304	0.15575	28.955	28.877	29.033	-0.34921					4	2	2	0	0	0	0.49039	1	10602	10602		17.443	5.9479	1	4561500			28665	1740	18228	18323	27546	27546					-0.0167324802175699
RSEKMTLSY	9	Unmodified	_RSEKMTLSY_					0	0	0		nc|ENSG00000101935|Q9Y4X0-4|AMMECR1;nc|ENSG00000101935|Q9Y4X0-3|AMMECR1;ENSG00000101935|ENST00000262844|AMMECR1	nc|ENSG00000101935|Q9Y4X0-4|AMMECR1	nc|ENSG00000101935|Q9Y4X0-4|AMMECR1	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7816772460938	2	557.781699	1113.54884	0.34194	0.00019073	-0.1981	-0.00011049	0.14384	8.0234E-05	557.7815090779682	31.009	0.25856	30.742	30.612	30.87	-0.26704					10	4	3	0	0	0	0.043159	1	11428	11428		78.06	26.431	1	51164000			28666	1813	18229	18324	27547	27547					-0.0033882212533171696
RSEKMTLSY	9	Unmodified	_RSEKMTLSY_					0	0	0		nc|ENSG00000101935|Q9Y4X0-4|AMMECR1;nc|ENSG00000101935|Q9Y4X0-3|AMMECR1;ENSG00000101935|ENST00000262844|AMMECR1	nc|ENSG00000101935|Q9Y4X0-4|AMMECR1	nc|ENSG00000101935|Q9Y4X0-4|AMMECR1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	557.781699	1113.54884	0.30942	0.00017259	0.79421	0.00044299	1.1036	0.00061558	557.7821155361944	31.187	0.20904	30.926	30.761	30.97	-0.26071	0.09219	0.00073274	NaN	78.06	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3122400			28667	1813	18229	18324							-0.0033882212533171696
RSEKRYSRS	9	Unmodified	_RSEKRYSRS_					0	0	0		ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	MSMS	HCT116MG_D190212_S4	4	390.212158203125	3	390.210899	1167.61087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.726	1	45.354	44.854	45.854	-0.37227								0	0	0	0.76973	1	16878	16878		0.96228	0	1				28668	1995	18230	18325	27548	27548					0.03376665337987106
RSELNINTQ	9	Unmodified	_RSELNINTQ_					0	0	0			REV__ENSG00000165813|ENST00000369287|CCDC186	REV__ENSG00000165813|ENST00000369287|CCDC186	MULTI-MSMS	HCT116MG_D190212_S1	1	537.2777709960938	2	537.780544	1073.54654	0.5694	0.00030621	3.708	0.0019941	4.2774	0.0023003	538.2855473324269	32.808	0.24226	32.808	32.691	32.933	0					10	4	3	0	0	0	0.41881	1	12135	12135		21.537	2.28	1	24237000	+		28669	10115	18231	18326	27549	27549					0.012704654611980004
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	HCT116MG_D190212_S2	2	412.2086181640625	3	412.208718	1233.60433	0.085955	3.5431E-05	-0.16997	-7.0062E-05	-0.084013	-3.4631E-05	412.208639982626	34.721	0.31055	34.563	34.399	34.709	-0.15834					12	5	3	0	0	0	0.022505	1	12935	12935		93.938	72.348	1	78874000			28670	6335	18232	18327	27550	27550					-0.0031322782269853633
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	HCT116MG_D190212_S3	3	412.5428161621094	3	412.208718	1233.60433	-0.024793	-1.022E-05	-0.36314	-0.00014969	-0.38794	-0.00015991	412.54287091571274	34.919	0.25938	34.622	34.544	34.803	-0.29707					6	4	2	0	0	0	0.69802	1	12902	12902		5.4027	1.8157	1	4375100			28671	6335	18232	18327	27551	27551					-0.0031322782269853633
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MATCH	HCT116MG_D190212_S1	1		3	412.208718	1233.60433	0.032647	1.3457E-05	-0.40915	-0.00016866	-0.3765	-0.0001552	412.20859467747874	34.647	0.20735	34.647	34.545	34.753	0	0.036188	-0.00014105	NaN	93.938	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3510200			28672	6335	18232	18327							-0.0031322782269853633
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	412.208718	1233.60433	-0.024793	-1.022E-05	-0.36314	-0.00014969	-0.38794	-0.00015991	412.54287091571274	34.919	0.25938	34.622	34.544	34.803	-0.29707	0.011543	-8.4152E-05	NaN	93.938	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4375100			28673	6335	18232	18327							-0.0031322782269853633
RSFPEIVQI	9	Unmodified	_RSFPEIVQI_					0	0	0			REV__PSMD11|p.R337Q|1|0.27|ENSG00000108671|chr17:32479348-32479348|G/A|missense_variant	REV__PSMD11|p.R337Q|1|0.27|ENSG00000108671|chr17:32479348-32479348|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	544.8096923828125	2	544.808574	1087.60259	0.53254	0.00029013	0.0036418	1.9841E-06	0.53618	0.00029211	544.808671744249	40.376	0.21664	39.998	39.865	40.082	-0.37828					7	4	2	0	0	0	0.077982	1	14828	14828		62.573	0	1	3280700	+		28674	17448	18233	18328	27552	27552					0.062297183686723656
RSFRRRLLKFI	11	Unmodified	_RSFRRRLLKFI_					0	0	0		nc|ENSG00000161835|Q7Z6J2-2|TAMALIN;ENSG00000161835|ENST00000293662|TAMALIN	nc|ENSG00000161835|Q7Z6J2-2|TAMALIN	nc|ENSG00000161835|Q7Z6J2-2|TAMALIN	MULTI-MSMS	HCT116MG_D190212_S1	1	746.473388671875	2	746.472786	1490.93102	0.72724	0.00054287	0.17785	0.00013276	0.90509	0.00067563	746.4728730460206	57.542	0.20733	57.542	57.412	57.619	0					9	3	3	0	0	0	0.74191	1	22166	22166		0.35063	0	1	79180000			28675	4498	18234	18329	27553	27553					0.20519173070033503
RSGPWNRGFGQ	11	Unmodified	_RSGPWNRGFGQ_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	HCT116MG_D190212_S3	3	631.3126220703125	2	631.312877	1260.6112	0.57626	0.0003638	-0.63801	-0.00040278	-0.061747	-3.8981E-05	631.3123596785989	26.534	0.26014	26.385	26.255	26.515	-0.14924					6	4	2	0	0	0	0.72419	1	9560	9560		12.873	3.3286	1	2472000			28676	6406	18235	18330	27554	27554					-0.008679149421595866
RSGQKQPG	8	Unmodified	_RSGQKQPG_					0	0	0			REV__ENST00000223145.9_1_7:8008447-8008645:+|nuORF	REV__ENST00000223145.9_1_7:8008447-8008645:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.23291015625	2	429.233033	856.451513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.191	1	24.912	24.412	25.412	-0.27958								0	0	0	0.8837	1	8915	8915		8.5933	0.68312	1		+		28677	14529	18236	18331	27555	27555					0.017545767806609547
RSGRVALA	8	Unmodified	_RSGRVALA_					0	0	0			REV__ENSG00000132846|ENST00000255198|ZBED3	REV__ENSG00000132846|ENST00000255198|ZBED3	MSMS	HCT116MG_D190212_S2	2	415.2542419433594	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.183	1	41.115	40.615	41.615	-0.068199								0	0	0	0.8837	1	15553	15553		12.532	0	1		+		28678	12007	18237	18332	27556	27556					0.07187757539975337
RSIELRIKKKK	11	Unmodified	_RSIELRIKKKK_					0	0	0		nc|ENSG00000115590|P27930-2|IL1R2;ENSG00000115590|ENST00000332549|IL1R2	nc|ENSG00000115590|P27930-2|IL1R2	nc|ENSG00000115590|P27930-2|IL1R2	MSMS	HCT116MG_D190212_S3	3	699.9652709960938	2	699.967003	1397.91945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.179	1	30.918	30.418	31.418	-0.26071								0	0	0	0.96149	1	11381	11381		0.30703	0	1				28679	2474	18238	18333	27557	27557					0.2364093125599993
RSKKFKKLT	9	Unmodified	_RSKKFKKLT_					0	0	0		ENSG00000111231|ENST00000228827|GPN3;nc|ENSG00000111231|Q9UHW5-2|GPN3;nc|ENSG00000111231|Q9UHW5-3|GPN3	ENSG00000111231|ENST00000228827|GPN3	ENSG00000111231|ENST00000228827|GPN3	MSMS	HCT116MG_D190212_S4	4	378.7808837890625	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.392	1	59.114	58.614	59.614	-0.27731								0	0	0	0.76995	1	22348	22348		1.0715	0.3738	1				28680	2278	18239	18334	27558	27558					0.1617396580197692
RSKKKKKKL	9	Unmodified	_RSKKKKKKL_					0	0	0			REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF	REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF	MSMS	HCT116MG_D190212_S1	1	381.9399719238281	3	381.939792	1142.79755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.995	1	10.995	10.495	11.495	0								0	0	0	0.77025	1	3421	3421		0	0	1		+		28681	14998	18240	18335	27559	27559					0.23185933964327887
RSKLLLPQQ	9	Unmodified	_RSKLLLPQQ_					0	0	0		ENST00000442441.5_1_21:34828355-34832802:-|nuORF	ENST00000442441.5_1_21:34828355-34832802:-|nuORF	ENST00000442441.5_1_21:34828355-34832802:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	541.3948974609375	2	541.837665	1081.66078	0.55165	0.00029891	0.11027	5.9749E-05	0.66192	0.00035866	541.8377408572396	60.621	0.25729	60.473	60.373	60.63	-0.14852					6	4	2	0	0	0	0.27049	1	23487	23487		0.52476	0	1	5166400			28682	7931	18241	18336	27560	27560					0.12321400013956918
RSLIHFRLICI	11	Unmodified	_RSLIHFRLICI_					0	0	0		L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|69|3|anti-sense	L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|69|3|anti-sense	L1MB4_dup8351|chr19:41723964-41725199:-|4.338323541633806|0.1814582314154843|4.58|482.0|69|3|anti-sense	MULTI-SECPEP	HCT116MG_D190212_S2	2	457.26080322265625	3	457.607825	1369.80165	0.33551	0.00015353	0.78341	0.00035849	1.1189	0.00051203	457.60809885483843	52.159	0.82461	51.972	51.574	52.399	-0.18726					26	15	2	0	0	0	0.36598	1	20178	20178		0.40827	0	1	14008000			28683	9277	18242	18337	27561	27561					0.13153655395740316
RSLQQPKI	8	Unmodified	_RSLQQPKI_					0	0	0		nc|ENSG00000166783|Q9Y4F3-6|MARF1;ENST00000548216.2_1_16:15729470-15733102:-|nuORF;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-6|MARF1	nc|ENSG00000166783|Q9Y4F3-6|MARF1	MSMS	HCT116MG_D190212_S3	3	485.2962341308594	2	485.295633	968.576714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.225	1	42.921	42.421	43.421	-0.30472								0	0	0	0.8837	1	16123	16123		9.3474	0	1				28684	4877	18243	18338	27562	27562					0.09116868917044485
RSLTNESCSVP	11	Unmodified	_RSLTNESCSVP_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-3|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-3|AGBL5	MSMS	HCT116MG_D190212_S4	4	398.1920166015625	3	398.192405	1191.55539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.112	1	33.727	33.227	34.227	-0.38499								0	0	0	0.95521	1	12443	12443		1.4551	0	1		+		28685	9884	18244	18339	27563	27563					-0.032729289646340476
RSMKRRRP	8	Unmodified	_RSMKRRRP_					0	0	0		ENST00000358939.8_1_15:65809863-65809971:-|nuORF	ENST00000358939.8_1_15:65809863-65809971:-|nuORF	ENST00000358939.8_1_15:65809863-65809971:-|nuORF	MSMS	HCT116MG_D190212_S1	1	362.8858947753906	3	362.885693	1085.63525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.391	1	10.391	9.8915	10.891	0								0	0	0	0.8837	1	3186	3186		0	0	1				28686	7328	18245	18340	27564	27564					0.09585647010544562
RSMKRRRP	8	Unmodified	_RSMKRRRP_					0	0	0		ENST00000358939.8_1_15:65809863-65809971:-|nuORF	ENST00000358939.8_1_15:65809863-65809971:-|nuORF	ENST00000358939.8_1_15:65809863-65809971:-|nuORF	MSMS	HCT116MG_D190212_S1	1	362.8859558105469	3	362.885693	1085.63525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.016	1	11.016	10.516	11.516	0								0	0	0	0.8837	1	3430	3430		0	0	1				28687	7328	18245	18340	27565	27565					0.09585647010544562
RSNEHIREL	9	Unmodified	_RSNEHIREL_					0	0	0		ENSG00000122359|ENST00000422982|ANXA11;nc|ENSG00000122359|P50995-2|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	ENSG00000122359|ENST00000422982|ANXA11	MULTI-MSMS	HCT116MG_D190212_S2	2	385.5413818359375	3	385.207266	1152.59997	-0.058406	-2.2498E-05	-0.32502	-0.0001252	-0.38343	-0.0001477	385.54146186376954	22.046	0.31285	21.661	21.479	21.792	-0.38503					9	5	2	0	0	0	0.18488	1	7816	7816		42.862	20.087	1	16246000			28688	2759	18246	18341	27566	27566					0.02977262963713656
RSPAGLRRAN	10	Unmodified	_RSPAGLRRAN_					0	0	0		ENST00000549913.6_1_12:113307544-113334582:+|nuORF;nc|ENSG00000089169|Q9Y2J0-2|RPH3A;ENSG00000089169|ENST00000389385|RPH3A	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	366.2130432128906	3	366.547734	1096.62137	-0.21012	-7.7019E-05	0.76384	0.00027998	0.55372	0.00020296	366.54803049167884	25.118	0.26201	25.118	24.987	25.249	0					7	4	2	0	0	0	0.30126	1	9028	9028		19.626	11.47	1	14698000			28689	1519	18247	18342	27567	27567					0.0769269278309821
RSRIRWKRERS	11	Unmodified	_RSRIRWKRERS_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	510.8082580566406	3	510.634313	1528.88111	0.48267	0.00024647	0.19979	0.00010202	0.68246	0.00034849	510.6343329920732	54.568	1.8356	54.568	53.822	55.658	0					131	35	6	0	0	0	0.74191	1	20643	20643		0.073264	0.0088572	1	480590000	+		28690	17484	18248	18343	27568	27568					0.13782438394059682
RSRPGRARVP	10	Unmodified	_RSRPGRARVP_					0	0	0			REV__ENST00000537045.5_1_22:19024374-19024692:-|nuORF	REV__ENST00000537045.5_1_22:19024374-19024692:-|nuORF	MSMS	HCT116MG_D190212_S3	3	576.6245727539062	2	576.347055	1150.67956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.94	1	48.624	48.124	49.124	-0.31596								0	0	0	0.95507	1	18419	18419		3.5965	1.2938	1		+		28691	16347	18249	18344	27569	27569					0.1102437442837072
RSRQRATDEL	10	Unmodified	_RSRQRATDEL_					0	0	0		DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.T4414Qfs*72|3|0.34|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;DNAH11|p.A4348Tfs*8|1|0.06|ENSG00000105877|chr7:21894990-21894991|-/CACTTTA|frameshift_variant;DNAH11|p.A2559Sfs*4|1|0.42|ENSG00000105877|chr7:21738723-21738724|-/A|frameshift_variant;DNAH11|p.L3180Sfs*6|1|0.05|ENSG00000105877|chr7:21784481-21784482|-/CAGA|frameshift_variant;DNAH11|p.E3097Nfs*4|1|0.21|ENSG00000105877|chr7:21773946-21773946|A/-|frameshift_variant;DNAH11|p.N3090Kfs*2|1|0.09|ENSG00000105877|chr7:21773928-21773929|-/A|frameshift_variant;DNAH11|p.S2374Qfs*2|1|0.14|ENSG00000105877|chr7:21717910-21717911|-/C|frameshift_variant;DNAH11|p.W2255Mfs*9|1|0.04|ENSG00000105877|chr7:21710627-21710628|-/A|frameshift_variant;DNAH11|p.N2201Kfs*6|1|0.04|ENSG00000105877|chr7:21707754-21707755|-/AGTAAAAGATTTC|frameshift_variant;DNAH11|p.C1849Sfs*8|1|0.05|ENSG00000105877|chr7:21683868-21683869|-/CTAAAATTCTCATAAATAG|frameshift_variant;DNAH11|p.K1250Nfs*43|1|0.63|ENSG00000105877|chr7:21606522-21606522|A/-|frameshift_variant;DNAH11|p.C1251Mfs*5|1|0.41|ENSG00000105877|chr7:21606521-21606522|-/A|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	DNAH11|p.T4414Nfs*34|1|0.37|ENSG00000105877|chr7:21900050-21900051|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	616.4405517578125	2	616.328724	1230.6429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.647	1	52.306	51.806	52.806	-0.34023								0	0	0	0.92607	1	19632	19632		10.074	0.6908	1				28692	698	18250	18345	27570	27570					0.03680033021169038
RSRSRERKWRI	11	Unmodified	_RSRSRERKWRI_					0	0	0		RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	510.6346435546875	3	510.634313	1528.88111	0.30279	0.00015462	0.33348	0.00017028	0.63627	0.0003249	510.6343574807025	55.231	1.7929	55.043	53.792	55.585	-0.18797					108	34	5	0	0	0	0.74191	2	21191	21191;21214		0.40827	0.078994	1	288140000			28693	18128	18251	18346	27571;27572	27571					0.13782438394059682
RSRSRHKKRRR	11	Unmodified	_RSRSRHKKRRR_					0	0	0			REV__nc|ENSG00000160201|Q01081-4|U2AF1	REV__nc|ENSG00000160201|Q01081-4|U2AF1	MSMS	HCT116MG_D190212_S2	2	761.96923828125	2	761.972339	1521.93013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.534	1	53.344	52.844	53.844	-0.1894								0	0	0	0.96149	1	20590	20590		0.30703	0	1		+		28694	12822	18252	18347	27573	27573					0.19003771473671804
RSRSRKRHHKK	11	Unmodified	_RSRSRKRHHKK_					0	0	0			REV__nc|ENSG00000196504|O75400-2|PRPF40A	REV__nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S1	1	738.9518432617188	2	738.448166	1474.88178	0.83199	0.00061438	0.20503	0.0001514	1.037	0.00076578	738.4481695550694	52.578	1.7013	52.578	51.451	53.153	0					74	32	3	0	0	0	0.74191	1	19734	19734		0.30703	0	1	354360000	+		28695	14030	18253	18348	27574	27574					0.1633327783376899
RSRTKKWSYYY	11	Unmodified	_RSRTKKWSYYY_					0	0	0			REV__nc|ENSG00000117625|Q9P2K3-4|RCOR3;REV__ENSG00000167771|ENST00000301459|RCOR2	REV__ENSG00000167771|ENST00000301459|RCOR2	MULTI-MSMS	HCT116MG_D190212_S2	2	769.39892578125	2	769.39915	1536.78375	1.0686	0.0008222	-1.3713	-0.001055	-0.30263	-0.00023285	769.3979522286864	56.416	0.20745	56.233	56.104	56.312	-0.18261					8	3	3	0	0	0	0.74191	1	21799	21799		4.5289	3.1993	1	24951000	+		28696	11621;13167	18254	18349	27575	27575					0.03682611674594227
RSSCCCCCCSS	11	Unmodified	_RSSCCCCCCSS_					0	0	0			REV__ENSG00000080709|ENST00000673685|KCNN2	REV__ENSG00000080709|ENST00000673685|KCNN2	MSMS	HCT116MG_D190212_S2	2	571.1700439453125	2	571.154725	1140.2949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.567	1	36.452	35.952	36.952	-0.11478								0	0	0	0.96141	1	13678	13678		0.35063	0.35063	1		+		28697	10869	18255	18350	27576	27576					-0.2696394314616555
RSSISLVSLAG	11	Unmodified	_RSSISLVSLAG_					0	0	0		KLHL41|p.R586Qfs*9|1|0.09|ENSG00000239474|chr2:169525631-169525632|-/AAATGTG|frameshift_variant;nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	KLHL41|p.R586Qfs*9|1|0.09|ENSG00000239474|chr2:169525631-169525632|-/AAATGTG|frameshift_variant	KLHL41|p.R586Qfs*9|1|0.09|ENSG00000239474|chr2:169525631-169525632|-/AAATGTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	545.3165893554688	2	545.316763	1088.61897	0.56631	0.00030882	-0.43168	-0.0002354	0.13463	7.3414E-05	545.3165206254366	46.95	0.56999	46.95	46.699	47.269	0					17	10	2	0	0	0	0.74191	1	17827	17827		3.5871	3.5871	1	15019000			28698	6535	18256	18351	27577	27577					0.07820799534761136
RSSKGHLK	8	Unmodified	_RSSKGHLK_					0	0	0		nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	MULTI-MSMS	HCT116MG_D190212_S1	1	912.5366821289062	1	912.537375	911.530098	0.65774	0.00060021	0.34552	0.0003153	1.0033	0.00091551	912.5374897560974	48.382	0.66914	48.382	48.048	48.717	0					37	12	5	0	0	0	0.8672	1	18356	18356		2.3027	0	1	1434200000			28699	9474	18257	18352	27578	27578					0.07079429085763422
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	HCT116MG_D190212_S2	2	523.3040161132812	2	523.303655	1044.59276	0.61928	0.00032407	-0.19256	-0.00010077	0.42672	0.00022331	523.3034198149621	47.329	1.5901	47.207	46.769	48.36	-0.12175					66	30	3	0	0	0	0.69329	1	18200	18200		5.7319	1.7875	1	63378000			28700	2510	18258	18353	27579	27579					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	HCT116MG_D190212_S4	4	523.3038330078125	2	523.303655	1044.59276	0.38442	0.00020117	0.15813	8.2748E-05	0.54254	0.00028391	523.3036279292177	47.784	2.4796	47.415	46.383	48.862	-0.36907					117	68	3	0	0	0	0.71898	1	17902	17902		3.9444	0.3479	1	20581000			28701	2510	18258	18353	27580	27580					0.07224530363282611
RSSLAELFV	9	Unmodified	_RSSLAELFV_					0	0	0			REV__ENSG00000167565|ENST00000322354|SERTAD3	REV__ENSG00000167565|ENST00000322354|SERTAD3	MULTI-MSMS	HCT116MG_D190212_S2	2	511.2875671386719	2	511.287474	1020.5604	0.25972	0.00013279	-0.29038	-0.00014847	-0.030661	-1.5677E-05	511.2872937593326	46.23	0.30875	46.129	45.966	46.275	-0.10139					9	5	2	0	0	0	0.32978	1	17617	17617		27.629	3.6082	1	15789000	+		28702	13153	18259	18354	27581	27581					0.050937429602981865
RSSLAELFV	9	Unmodified	_RSSLAELFV_					0	0	0			REV__ENSG00000167565|ENST00000322354|SERTAD3	REV__ENSG00000167565|ENST00000322354|SERTAD3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	511.287474	1020.5604	0.50866	0.00026007	-0.045057	-2.3037E-05	0.46361	0.00023704	511.2873330502928	46.219	0.20647	46.219	46.079	46.285	0	0.045238	0.00021643	NaN	27.629	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12697000	+		28703	13153	18259	18354							0.050937429602981865
RSSPNGPPPVW	11	Unmodified	_RSSPNGPPPVW_					0	0	0			REV__ENST00000497036.5_1_22:50691832-50699551:-|nuORF	REV__ENST00000497036.5_1_22:50691832-50699551:-|nuORF	MSMS	HCT116MG_D190212_S1	1	597.3037109375	2	597.306729	1192.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.891	1	49.891	49.391	50.391	0								0	0	0	0.95113	1	19022	19022		5.7319	0.43497	1		+		28704	16096	18260	18355	27582	27582					0.010310485948139103
RSSRFGRRR	9	Unmodified	_RSSRFGRRR_					0	0	0			REV__ENST00000473125.5_1_15:34674999-34675119:-|nuORF	REV__ENST00000473125.5_1_15:34674999-34675119:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	589.3435668945312	2	589.342304	1176.67005	0.55118	0.00032483	0.92171	0.0005432	1.4729	0.00086804	589.3429670006979	51.956	0.87967	51.956	51.4	52.28	0					17	16	2	0	0	0	0.74917	1	19831	19831		1.8442	0.19162	1	13154000	+		28705	15887	18261	18356	27583	27583					0.08878606142843637
RSSRFGRRR	9	Unmodified	_RSSRFGRRR_					0	0	0			REV__ENST00000473125.5_1_15:34674999-34675119:-|nuORF	REV__ENST00000473125.5_1_15:34674999-34675119:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	589.342304	1176.67005	0.55118	0.00032483	0.92171	0.0005432	1.4729	0.00086804	589.3429670006979	51.956	0.87967	51.956	51.4	52.28	0	0.085121	-7.4713E-05	NaN	1.8442	17	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13154000	+		28706	15887	18261	18356							0.08878606142843637
RSSRFLIKMFL	11	Unmodified	_RSSRFLIKMFL_					0	0	0			REV__ENST00000491720.5_1_2:182783382-182783506:+|nuORF	REV__ENST00000491720.5_1_2:182783382-182783506:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	699.4087524414062	2	699.407932	1396.80131	0.77788	0.00054406	0.47082	0.0003293	1.2487	0.00087335	699.408349117093	52.357	0.41145	52.357	52.125	52.536	0					14	7	2	0	0	0	0.74191	1	20097	20097		1.1933	0	1	33104000	+		28707	16045	18262	18357	27584	27584					0.11878235675885662
RSSRFLIKMFL	11	Unmodified	_RSSRFLIKMFL_					0	0	0			REV__ENST00000491720.5_1_2:182783382-182783506:+|nuORF	REV__ENST00000491720.5_1_2:182783382-182783506:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	699.4089965820312	2	699.407932	1396.80131	0.74675	0.00052229	0.79325	0.0005548	1.54	0.0010771	699.4084294852356	54.333	0.78296	54.037	53.617	54.4	-0.29587					23	14	2	0	0	0	0.74191	1	20597	20597		1.1933	0	1	3261800	+		28708	16045	18262	18357	27585	27585					0.11878235675885662
RSSRLRKTF	9	Unmodified	_RSSRLRKTF_					0	0	0			REV__ENST00000566445.5_1_16:75642811-75646269:-|nuORF	REV__ENST00000566445.5_1_16:75642811-75646269:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	575.8430786132812	2	575.843813	1149.67307	0.41168	0.00023707	-0.68068	-0.00039197	-0.269	-0.0001549	575.8432722907681	47.363	1.101	47.363	46.595	47.696	0					51	21	3	0	0	0	0.74917	1	17967	17967		1.8442	0	1	79346000	+		28709	16545	18263	18358	27586	27586					0.10422436476960684
RSSRLRKTF	9	Unmodified	_RSSRLRKTF_					0	0	0			REV__ENST00000566445.5_1_16:75642811-75646269:-|nuORF	REV__ENST00000566445.5_1_16:75642811-75646269:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1150.6788330078125	1	1150.68035	1149.67307	0.46252	0.00053221	-1.0906	-0.001255	-0.62812	-0.00072276	1150.678781313806	48.662	0.6165	48.662	48.254	48.871	0					24	11	3	0	0	0	0.72399	1	18459	18459		3.5965	1.7523	1	48309000	+		28710	16545	18263	18358	27587	27587					0.10422436476960684
RSSRLRKTF	9	Unmodified	_RSSRLRKTF_					0	0	0			REV__ENST00000566445.5_1_16:75642811-75646269:-|nuORF	REV__ENST00000566445.5_1_16:75642811-75646269:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	575.8438720703125	2	575.843813	1149.67307	0.35781	0.00020604	-0.64397	-0.00037083	-0.28616	-0.00016478	575.8431393031508	48.348	1.1683	47.981	47.258	48.426	-0.36728					50	30	3	0	0	0	0.74917	1	17943	17943		1.8442	0	1	10545000	+		28711	16545	18263	18358	27588	27588					0.10422436476960684
RSSRLRRRRWS	11	Unmodified	_RSSRLRRRRWS_					0	0	0		ENST00000599652.5_1_19:49965164-49969478:+|nuORF;ALDH16A1|p.Y528Mfs*99|1|0.33|ENSG00000161618|chr19:49465745-49465745|C/-|frameshift_variant	ENST00000599652.5_1_19:49965164-49969478:+|nuORF	ENST00000599652.5_1_19:49965164-49969478:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	758.4466552734375	2	758.445623	1514.87669	0.9208	0.00069838	-0.096571	-7.3244E-05	0.82423	0.00062514	758.4452978783223	53.764	1.7929	53.764	52.794	54.587	0					58	34	3	0	0	0	0.74191	2	20427	20427;20904		0.26902	0.26902	1	48777000			28712	92	18264	18359	27589;27590	27589					0.13984973971150794
RSSSAESFGLF	11	Unmodified	_RSSSAESFGLF_					0	0	0		ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	MULTI-MSMS	HCT116MG_D190212_S2	2	594.5540161132812	2	594.288202	1186.56185	0.52101	0.00030963	0.22136	0.00013155	0.74237	0.00044118	594.2883118806849	38.381	0.73013	38.288	37.753	38.483	-0.093006					24	13	2	0	0	0	0.73696	1	14393	14393		8.1555	0.54658	1	30185000			28713	2737	18265	18360	27591	27591					-0.023966677416183302
RSSVLARGP	9	Unmodified	_RSSVLARGP_					0	0	0			REV__ENST00000598244.5_1_19:58962997-58963642:+|nuORF	REV__ENST00000598244.5_1_19:58962997-58963642:+|nuORF	MSMS	HCT116MG_D190212_S4	4	471.821044921875	2	471.777608	941.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.891	1	34.505	34.005	35.005	-0.38606								0	0	0	0.53872	1	12758	12758		26.884	4.1474	1		+		28714	16733	18266	18361	27592	27592					0.06755411740186901
RSSWIWRD	8	Unmodified	_RSSWIWRD_					0	0	0		LAMA5|p.R1573Afs*84|1|0.4|ENSG00000130702|chr20:62327946-62327946|G/-|frameshift_variant	LAMA5|p.R1573Afs*84|1|0.4|ENSG00000130702|chr20:62327946-62327946|G/-|frameshift_variant	LAMA5|p.R1573Afs*84|1|0.4|ENSG00000130702|chr20:62327946-62327946|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	553.280029296875	2	553.280515	1104.54648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.25	1	48.25	47.75	48.75	0								0	0	0	0.8837	1	18354	18354		2.3027	0.4585	1				28715	9292	18267	18362	27593	27593					-0.0016148974814313988
RSTDQRGT	8	Unmodified	_RSTDQRGT_					0	0	0			REV__nc|ENSG00000141551|P48730-2|CSNK1D	REV__nc|ENSG00000141551|P48730-2|CSNK1D	MSMS	HCT116MG_D190212_S4	4	460.7326354980469	2	460.730855	919.447156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.479	1	15.318	14.818	15.818	-0.16173								0	0	0	0.8837	1	4993	4993		10.824	0	1		+		28716	12337	18268	18363	27594	27594					-0.015789324328920884
RSTNIKKA	8	Unmodified	_RSTNIKKA_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MSMS	HCT116MG_D190212_S3	3	459.3428955078125	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.656	1	58.387	57.887	58.887	-0.26884								0	0	0	0.8837	1	22318	22318		0.69038	0	1				28717	4984	18269	18364	27595	27595					0.08380295882943756
RSTNIKKA	8	Unmodified	_RSTNIKKA_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MSMS	HCT116MG_D190212_S4	4	459.2804260253906	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.123	1	60.863	60.363	61.363	-0.2602								0	0	0	0.8837	1	23050	23050		0.69038	0	1				28718	4984	18269	18364	27596	27596					0.08380295882943756
RSTQYDGY	8	Unmodified	_RSTQYDGY_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	HCT116MG_D190212_S1	1	495.2202453613281	2	495.219788	988.425024	0.55772	0.00027619	-0.43175	-0.00021381	0.12597	6.2383E-05	495.21957957348485	29.138	0.31355	29.138	28.955	29.269	0					8	5	2	0	0	0	0.64404	1	10645	10645		28.487	4.4663	1	6074500			28719	4767	18270	18365	27597	27597					-0.06965156901333103
RSTQYDGY	8	Unmodified	_RSTQYDGY_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	495.219788	988.425024	0.55772	0.00027619	-0.43175	-0.00021381	0.12597	6.2383E-05	495.21957957348485	29.138	0.31355	29.138	28.955	29.269	0	-0.055259	-0.00039259	NaN	28.487	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6074500			28720	4767	18270	18365							-0.06965156901333103
RSTQYDGY	8	Unmodified	_RSTQYDGY_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	495.219788	988.425024	0.6433	0.00031858	0.13121	6.4977E-05	0.77451	0.00038355	495.21980251154474	29.549	0.15503	29.248	29.134	29.289	-0.30096	0.055259	0.00016498	NaN	28.487	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13342000			28721	4767	18270	18365							-0.06965156901333103
RSVCRPVAPV	10	Unmodified	_RSVCRPVAPV_					0	0	0		IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant	IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant	IRS1|p.P368Rfs*95|1|0.18|ENSG00000169047|chr2:226797636-226797636|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	542.2762451171875	2	542.308218	1082.60188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.639	1	53.45	52.95	53.95	-0.1894								0	0	0	0.82952	1	20633	20633		24.991	4.5373	1				28722	9246	18271	18366	27598	27598					0.06388600447962745
RTAGGGGG	8	Unmodified	_RTAGGGGG_					0	0	0		nc|ENSG00000028277|P09086-3|POU2F2;nc|ENSG00000028277|P09086-2|POU2F2;nc|ENSG00000028277|P09086|POU2F2;nc|ENSG00000028277|P09086-5|POU2F2;ENSG00000028277|ENST00000692977|POU2F2	nc|ENSG00000028277|P09086-3|POU2F2	nc|ENSG00000028277|P09086-3|POU2F2	MULTI-MSMS	HCT116MG_D190212_S1	1	632.3124389648438	1	632.311063	631.303787	0.78496	0.00049634	1.4184	0.00089688	2.2034	0.0013932	632.3118784461499	46.609	0.25916	46.609	46.492	46.751	0					7	4	2	0	0	0	0.87685	1	17701	17701		0.6015	0	1	14223000			28723	9370	18272	18367	27599	27599					-0.026613147533225856
RTAGGGGG	8	Unmodified	_RTAGGGGG_					0	0	0		nc|ENSG00000028277|P09086-3|POU2F2;nc|ENSG00000028277|P09086-2|POU2F2;nc|ENSG00000028277|P09086|POU2F2;nc|ENSG00000028277|P09086-5|POU2F2;ENSG00000028277|ENST00000692977|POU2F2	nc|ENSG00000028277|P09086-3|POU2F2	nc|ENSG00000028277|P09086-3|POU2F2	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	632.311063	631.303787	0.54836	0.00034673	1.7294	0.0010935	2.2777	0.0014402	632.312180580297	47.203	0.37551	46.833	46.641	47.016	-0.37038	0.1119	0.00010149	NaN	0.6015	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6617900			28724	9370	18272	18367							-0.026613147533225856
RTAIHEVM	8	Unmodified	_RTAIHEVM_					0	0	0		nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.S549Pfs*8|1|0.36|ENSG00000166508|chr7:100095422-100095422|G/-|frameshift_variant;ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF	nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MSMS	HCT116MG_D190212_S2	2	478.752685546875	2	478.752744	955.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.222	1	25.86	25.36	26.36	-0.36164								0	0	0	0.7984	1	9477	9477		22.736	9.2284	1				28725	9427;4862	18273	18368	27600	27600					0.011409607398832122
RTDAILLGHY	10	Unmodified	_RTDAILLGHY_					0	0	0		ENST00000474457.1_1_6:52958219-52962625:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9	ENST00000474457.1_1_6:52958219-52962625:+|nuORF	ENST00000474457.1_1_6:52958219-52962625:+|nuORF	MSMS	HCT116MG_D190212_S1	1	579.8169555664062	2	579.81693	1157.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.215	1	40.215	39.715	40.715	0								0	0	0	0.022581	1	15108	15108		121.53	77.676	1				28726	2329	18274	18369	27601	27601					0.046802192546238075
RTDFHGSGY	9	Unmodified	_RTDFHGSGY_					0	0	0		ENSG00000092931|ENST00000685175|MFSD11;nc|ENSG00000092931|O43934-2|MFSD11;MFSD11|p.T184Dfs*13|1|0.36|ENSG00000092931|chr17:76744370-76744371|-/G|frameshift_variant	ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	MULTI-MSMS	HCT116MG_D190212_S1	1	520.2332763671875	2	520.23323	1038.45191	0.39813	0.00020712	-0.39989	-0.00020804	-0.001763	-9.1715E-07	520.233069683794	21.62	0.26038	21.62	21.542	21.802	0					6	4	2	0	0	0	0.11363	1	7637	7637		55.503	31.482	1	7095500			28727	1591	18275	18370	27602	27602					-0.06578048290111838
RTDGKVFQF	9	Unmodified	_RTDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	HCT116MG_D190212_S1	1	549.2904052734375	2	549.290548	1096.56654	0.34477	0.00018938	-0.35425	-0.00019459	-0.0094805	-5.2076E-06	549.2900318522127	40.961	0.23488	40.961	40.846	41.081	0					10	4	3	0	0	0	0.060947	1	15429	15429		69.338	23.317	1	24963000			28728	2418	18276	18371	27603	27603					0.022122611917893664
RTDGKVFQF	9	Unmodified	_RTDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2908935546875	2	549.290548	1096.56654	0.42335	0.00023254	0.36514	0.00020057	0.78848	0.00043311	549.2907573751232	40.984	0.31091	40.914	40.725	41.036	-0.069626					14	5	3	0	0	0	0.06555	1	15470	15470		67.081	17.148	1	111600000			28729	2418	18276	18371	27604	27604					0.022122611917893664
RTDGKVFQF	9	Unmodified	_RTDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MATCH	HCT116MG_D190212_S3	3		2	549.290548	1096.56654	0.4247	0.00023328	1.1198	0.00061508	1.5445	0.00084837	549.2912247062048	41.221	0.26081	40.919	40.788	41.049	-0.30185	-0.012313	0.0011346	NaN	69.338	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5990500			28730	2418	18276	18371							0.022122611917893664
RTDGTVEIY	9	Unmodified	_RTDGTVEIY_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MULTI-MSMS	HCT116MG_D190212_S1	1	527.2647094726562	2	527.264196	1052.51384	0.33304	0.0001756	0.077244	4.0728E-05	0.41029	0.00021633	527.2643662088541	33.846	0.31341	33.846	33.711	34.024	0					13	5	3	0	0	0	0.090581	1	12561	12561		60.074	5.3004	1	10389000			28731	3702	18277	18372	27605	27605					-0.010317416616544506
RTDGTVEIY	9	Unmodified	_RTDGTVEIY_					0	0	0		nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF	nc|ENSG00000141076|Q969X6-2|UTP4	nc|ENSG00000141076|Q969X6-2|UTP4	MSMS	HCT116MG_D190212_S2	2	527.2645263671875	2	527.264196	1052.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.184	1	34.009	33.509	34.509	-0.17512								0	0	0	0.30238	1	12709	12709		39.95	3.9055	1				28732	3702	18277	18372	27606	27606					-0.010317416616544506
RTDHELGKY	9	Unmodified	_RTDHELGKY_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	373.524169921875	3	373.524484	1117.55162	-0.17891	-6.6827E-05	-0.25342	-9.4659E-05	-0.43233	-0.00016149	373.5243059076804	19.755	0.15685	19.755	19.652	19.809	0					6	2	3	0	0	0	0.37942	1	6885	6885		22.775	18.246	1	2890100			28733	4496	18278	18373	27607	27607					-0.0024523067618247296
RTDHELGKY	9	Unmodified	_RTDHELGKY_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	559.7833251953125	2	559.783087	1117.55162	0.35838	0.00020061	0.049565	2.7746E-05	0.40794	0.00022836	559.7830445318051	20.483	0.2665	20.103	19.969	20.236	-0.37949					10	4	3	0	0	0	0.069943	1	7185	7185		64.927	30.824	1	36483000			28734	4496	18278	18373	27608	27608					-0.0024523067618247296
RTDHELGKY	9	Unmodified	_RTDHELGKY_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	373.52423095703125	3	373.524484	1117.55162	-0.22754	-8.4993E-05	0.076596	2.8611E-05	-0.15095	-5.6382E-05	373.5244119584051	20.502	0.2137	20.123	19.969	20.183	-0.37949					8	3	3	0	0	0	0.014023	1	7187	7187		85.764	66.138	1	20686000			28735	4496	18278	18373	27609	27609					-0.0024523067618247296
RTDHELGKY	9	Unmodified	_RTDHELGKY_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	373.5243225097656	3	373.524484	1117.55162	-0.10707	-3.9994E-05	-0.35229	-0.00013159	-0.45936	-0.00017158	373.52424027419806	19.352	0.20835	19.412	19.281	19.49	0.05983					6	3	2	0	0	0	0.24534	1	6644	6644		34.222	24.678	1	3939100			28736	4496	18278	18373	27610	27610					-0.0024523067618247296
RTDIARTEY	9	Unmodified	_RTDIARTEY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	562.7875366210938	2	562.78837	1123.56219	0.34975	0.00019684	0.16736	9.4188E-05	0.51711	0.00029103	562.7883786099139	23.079	0.3641	23.079	22.898	23.262	0					16	6	4	0	0	0	0.0056292	1	8197	8197		132.13	93.52	1	73853000			28737	741	18279	18374	27611	27611					0.005347519782390009
RTDIARTEY	9	Unmodified	_RTDIARTEY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	375.5278015136719	3	375.528005	1123.56219	-0.15236	-5.7214E-05	0.27456	0.00010311	0.12221	4.5892E-05	375.52811617620085	23.053	0.26002	23.053	22.898	23.158	0					10	4	3	0	0	0	0.094138	1	8206	8206		48.073	26.483	1	6044900			28738	741	18279	18374	27612	27612					0.005347519782390009
RTDIARTEY	9	Unmodified	_RTDIARTEY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	563.2903442382812	2	562.78837	1123.56219	0.41116	0.00023139	0.30204	0.00016998	0.7132	0.00040138	562.7885676521457	23.605	0.46864	23.221	23.091	23.56	-0.38324					15	8	3	0	0	0	0.0056292	2	8437	8437;8486		132.13	90.179	1	88575000			28739	741	18279	18374	27613;27614	27613					0.005347519782390009
RTDIARTEY	9	Unmodified	_RTDIARTEY_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		3	375.528005	1123.56219	-0.21528	-8.0845E-05	0.94865	0.00035625	0.73337	0.0002754	375.5284254619671	23.605	0.1561	23.221	23.143	23.299	-0.38324	0.084152	0.0002229	NaN	48.073	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8982700			28740	741	18279	18374							0.005347519782390009
RTDKPYSAKY	10	Unmodified	_RTDKPYSAKY_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	HCT116MG_D190212_S1	1	410.21563720703125	3	410.215539	1227.62479	-0.12529	-5.1395E-05	-0.098443	-4.0383E-05	-0.22373	-9.1778E-05	410.21554114153525	18.636	0.20839	18.636	18.506	18.714	0					7	3	3	0	0	0	0.060226	1	6440	6440		81.923	61.052	1	10080000			28741	6023	18280	18375	27615	27615					0.02007898046417722
RTDKPYSAKY	10	Unmodified	_RTDKPYSAKY_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	HCT116MG_D190212_S1	1	614.81982421875	2	614.81967	1227.62479	0.41273	0.00025375	0.047726	2.9343E-05	0.46046	0.0002831	614.8197350060311	18.636	0.15636	18.636	18.558	18.714	0					4	2	2	0	0	0	0.71833	1	6446	6446		25.997	18.087	1	4040000			28742	6023	18280	18375	27616	27616					0.02007898046417722
RTDKPYSAKY	10	Unmodified	_RTDKPYSAKY_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	HCT116MG_D190212_S2	2	410.21551513671875	3	410.215539	1227.62479	-0.14684	-6.0235E-05	0.017049	6.9938E-06	-0.12979	-5.3241E-05	410.21535790974804	19.388	0.36421	19.018	18.836	19.2	-0.3695					11	6	3	0	0	0	0.021997	1	6721	6721		116.75	90.748	1	25637000			28743	6023	18280	18375	27617	27617					0.02007898046417722
RTDLHSTWQY	10	Unmodified	_RTDLHSTWQY_					0	0	0		ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2	ENST00000482957.1_1_20:62065100-62065586:-|nuORF	ENST00000482957.1_1_20:62065100-62065586:-|nuORF	MSMS	HCT116MG_D190212_S1	1	653.813232421875	2	653.812376	1305.6102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.067	1	35.067	34.567	35.567	0								0	0	0	0.26794	1	13032	13032		79.427	44.495	1				28744	1306	18281	18376	27618	27618					-0.030381741017208697
RTDLHSTWQY	10	Unmodified	_RTDLHSTWQY_					0	0	0		ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2	ENST00000482957.1_1_20:62065100-62065586:-|nuORF	ENST00000482957.1_1_20:62065100-62065586:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	653.8129272460938	2	653.812376	1305.6102	0.63043	0.00041218	0.29743	0.00019446	0.92786	0.00060664	653.8123058164156	35.049	0.31111	34.891	34.709	35.02	-0.15834					13	5	3	0	0	0	0.098828	1	13063	13063		93.938	68.947	1	91115000			28745	1306	18281	18376	27619	27619					-0.030381741017208697
RTDLHSTWQY	10	Unmodified	_RTDLHSTWQY_					0	0	0		ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2	ENST00000482957.1_1_20:62065100-62065586:-|nuORF	ENST00000482957.1_1_20:62065100-62065586:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	436.2108154296875	3	436.210676	1305.6102	0.097088	4.2351E-05	0.22277	9.7173E-05	0.31985	0.00013952	436.2106015125832	35.056	0.31111	34.897	34.709	35.02	-0.15834					10	5	3	0	0	0	0.58464	1	13087	13087		29.281	20.037	1	28692000			28746	1306	18281	18376	27620	27620					-0.030381741017208697
RTDLHSTWQY	10	Unmodified	_RTDLHSTWQY_					0	0	0		ENST00000482957.1_1_20:62065100-62065586:-|nuORF;nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2	ENST00000482957.1_1_20:62065100-62065586:-|nuORF	ENST00000482957.1_1_20:62065100-62065586:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	654.3137817382812	2	653.812376	1305.6102	0.92304	0.00060349	-0.3314	-0.00021667	0.59164	0.00038682	653.8121127930251	35.334	0.26654	35.035	34.853	35.12	-0.29922					8	5	3	0	0	0	0.13814	1	13045	13045		84.522	56.028	1	23729000			28747	1306	18281	18376	27621	27621					-0.030381741017208697
RTDPVVADY	9	Unmodified	_RTDPVVADY_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2595825195312	2	518.258914	1034.50327	0.54834	0.00028418	-0.042001	-2.1767E-05	0.50634	0.00026242	518.2588097675474	31.016	0.31247	31.016	30.867	31.18	0					14	5	3	0	0	0	0.053544	1	11401	11401		72.968	38.866	1	13343000			28748	3170	18282	18377	27622	27622					-0.01259724316082611
RTDPVVADY	9	Unmodified	_RTDPVVADY_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	HCT116MG_D190212_S2	2	518.259033203125	2	518.258914	1034.50327	0.41924	0.00021727	-0.26879	-0.0001393	0.15045	7.7972E-05	518.2588330188486	31.269	0.56792	31.003	30.769	31.337	-0.26603					23	10	3	0	0	0	0.016744	1	11512	11512		99.755	52.007	1	79335000			28749	3170	18282	18377	27623	27623					-0.01259724316082611
RTDPVVADY	9	Unmodified	_RTDPVVADY_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	HCT116MG_D190212_S2	2	1035.5089111328125	1	1035.51055	1034.50327	0.70917	0.00073436	-0.22553	-0.00023354	0.48364	0.00050082	1035.5101176740966	31.267	0.25814	31	30.87	31.128	-0.26704					8	4	2	0	0	0	0.0063854	1	11540	11540		125.53	75.596	1	15593000			28750	3170	18282	18377	27624	27624					-0.01259724316082611
RTDPVVADY	9	Unmodified	_RTDPVVADY_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2590942382812	2	518.258914	1034.50327	0.20839	0.000108	0.22893	0.00011864	0.43732	0.00022664	518.2589911139795	31.413	0.52192	31.143	30.908	31.43	-0.27028					19	9	3	0	0	0	0.05892	1	11477	11477		70.332	36.23	1	21821000			28751	3170	18282	18377	27625	27625					-0.01259724316082611
RTDPVVADY	9	Unmodified	_RTDPVVADY_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;PPARG|p.S186Vfs*47|1|0.08|ENSG00000132170|chr3:12392683-12392683|A/-|frameshift_variant;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;PPARG|p.L298Cfs*38|1|0.26|ENSG00000132170|chr3:12416771-12416771|C/-|frameshift_variant;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MSMS	HCT116MG_D190212_S4	4	518.2593383789062	2	518.258914	1034.50327	0.20361	0.00010552	0.65974	0.00034192	0.86335	0.00044744	518.2592764882063	31.543	0.31184	31.173	31.023	31.335	-0.37027					9	5	2	0	0	0	0.20983	1	11454	11454		40.239	9.6027	1	5449700			28752	3170	18282	18377	27626	27626					-0.01259724316082611
RTDYGQVFTY	10	Unmodified	_RTDYGQVFTY_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant;nc|ENSG00000145555|Q9HD67-2|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	HCT116MG_D190212_S1	1	625.2967529296875	2	625.296027	1248.5775	0.60533	0.00037851	0.012758	7.9775E-06	0.61809	0.00038649	625.2959946338815	43.083	0.36479	43.083	42.9	43.264	0					21	6	5	0	0	0	0.029154	1	16251	16251		103.82	65.648	1	247050000			28753	3914	18283	18378	27627	27627					-0.03684381224547906
RTDYGQVFTY	10	Unmodified	_RTDYGQVFTY_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant;nc|ENSG00000145555|Q9HD67-2|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	HCT116MG_D190212_S1	1	1249.5853271484375	1	1249.58478	1248.5775	0.58773	0.00073441	0.11433	0.00014286	0.70205	0.00087727	1249.5850684591564	43.082	0.20831	43.082	42.951	43.16	0					6	3	2	0	0	0	0.021392	1	16297	16297		117.84	41.013	1	11787000			28754	3914	18283	18378	27628	27628					-0.03684381224547906
RTDYGQVFTY	10	Unmodified	_RTDYGQVFTY_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant;nc|ENSG00000145555|Q9HD67-2|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	HCT116MG_D190212_S2	2	625.7976684570312	2	625.296027	1248.5775	0.26072	0.00016303	0.31933	0.00019967	0.58005	0.0003627	625.296209591861	43.042	0.56564	42.968	42.789	43.355	-0.073376					20	10	3	0	0	0	0.019418	2	16300	16300;16316		121.53	58.961	1	161330000			28755	3914	18283	18378	27629;27630	27629					-0.03684381224547906
RTDYGQVFTY	10	Unmodified	_RTDYGQVFTY_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant;nc|ENSG00000145555|Q9HD67-2|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	HCT116MG_D190212_S3	3	625.2955932617188	2	625.296027	1248.5775	0.49519	0.00030964	-0.11493	-7.1867E-05	0.38026	0.00023777	625.2956995845032	43.364	0.244	43.059	42.945	43.189	-0.30472					10	4	3	0	0	0	0.15757	2	16193	16148;16193		63.227	23.278	1	11732000			28756	3914	18283	18378	27631;27632	27632					-0.03684381224547906
RTEAESGLLFY	11	Unmodified	_RTEAESGLLFY_					0	0	0		LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	643.3258666992188	2	643.324785	1284.63502	0.66364	0.00042694	0.41042	0.00026403	1.0741	0.00069097	643.3250795938726	51.942	0.26534	51.942	51.756	52.021	0					8	4	2	0	0	0	0.14382	1	19872	19872		81.915	55.647	1	24517000			28757	6086	18284	18379	27633	27633					0.004084609809979156
RTEAESGLLFY	11	Unmodified	_RTEAESGLLFY_					0	0	0		LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant;LAMA2|p.A2876Sfs*30|1|0.32|ENSG00000196569|chr6:129505271-129505272|-/A|frameshift_variant;LAMA2|p.M2985Wfs*8|1|0.15|ENSG00000196569|chr6:129512453-129512453|A/-|frameshift_variant;ENSG00000196569|ENST00000421865|LAMA2	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	643.324785	1284.63502	0.83745	0.00053875	0.47468	0.00030538	1.3121	0.00084413	643.3251065847716	52.148	0.20639	51.96	51.832	52.038	-0.18725	-0.028569	0.00013258	NaN	81.915	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15285000			28758	6086	18284	18379							0.004084609809979156
RTEEGPTLSY	10	Unmodified	_RTEEGPTLSY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	HCT116MG_D190212_S1	1	576.7808837890625	2	576.78021	1151.54587	0.52483	0.00030271	0.2162	0.0001247	0.74103	0.00042741	576.7802694016963	33.478	0.41473	33.478	33.296	33.711	0					12	7	2	0	0	0	0.029154	1	12393	12393		103.82	63.874	1	45416000			28759	925	18285	18380	27634	27634					-0.023843739784979334
RTEEGPTLSY	10	Unmodified	_RTEEGPTLSY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	HCT116MG_D190212_S2	2	576.7808227539062	2	576.78021	1151.54587	0.61027	0.00035199	-0.0081658	-4.7099E-06	0.60211	0.00034728	576.7801313589287	33.65	0.415	33.457	33.276	33.691	-0.19297					19	7	4	0	0	0	0.029154	1	12499	12499		103.82	63.874	1	165660000			28760	925	18285	18380	27635	27635					-0.023843739784979334
RTEEGPTLSY	10	Unmodified	_RTEEGPTLSY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	HCT116MG_D190212_S2	2	1152.5543212890625	1	1152.55314	1151.54587	0.71207	0.0008207	0.37929	0.00043715	1.0914	0.0012579	1152.5534078071441	33.649	0.20773	33.456	33.327	33.534	-0.19297					5	3	2	0	0	0	0.0064345	1	12520	12520		163.69	83.011	1	26082000			28761	925	18285	18380	27636	27636					-0.023843739784979334
RTEEGPTLSY	10	Unmodified	_RTEEGPTLSY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	HCT116MG_D190212_S3	3	576.7803344726562	2	576.78021	1151.54587	0.47285	0.00027273	-0.088035	-5.0777E-05	0.38482	0.00022196	576.7800264842774	33.873	0.41578	33.579	33.404	33.82	-0.29374					17	7	4	0	0	0	0.14359	1	12446	12446		65.474	26.859	1	17667000			28762	925	18285	18380	27637	27637					-0.023843739784979334
RTEEGPTLSY	10	Unmodified	_RTEEGPTLSY_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MSMS	HCT116MG_D190212_S4	4	576.78076171875	2	576.78021	1151.54587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.004	1	33.619	33.119	34.119	-0.38426								0	0	0	0.80235	1	12399	12399		28.495	3.0952	1				28763	925	18285	18380	27638	27638					-0.023843739784979334
RTEEVKHVDFY	11	Unmodified	_RTEEVKHVDFY_					0	0	0		ENST00000471478.1_1_20:25196340-25204798:+|nuORF;ENST00000485936.5_1_20:25203457-25206230:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6	ENST00000471478.1_1_20:25196340-25204798:+|nuORF	ENST00000471478.1_1_20:25196340-25204798:+|nuORF	MSMS	HCT116MG_D190212_S2	2	474.9046936035156	3	474.905253	1421.69393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.275	1	29.991	29.491	30.491	-0.28453								0	0	0	0.85069	1	11124	11124		26.346	17.594	1				28764	8157	18286	18381	27639	27639					-5.062724653726036E-05
RTEEVKHVDFY	11	Unmodified	_RTEEVKHVDFY_					0	0	0		ENST00000471478.1_1_20:25196340-25204798:+|nuORF;ENST00000485936.5_1_20:25203457-25206230:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6	ENST00000471478.1_1_20:25196340-25204798:+|nuORF	ENST00000471478.1_1_20:25196340-25204798:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	474.72467041015625	3	474.905253	1421.69393	-0.092471	-4.3915E-05	-1.2206	-0.00057968	-1.3131	-0.00062359	474.90481933807376	30.183	0.20661	29.899	29.77	29.976	-0.28453					5	3	2	0	0	0	0.36471	1	11067	11067		9.0676	6.8148	1	14666000			28765	8157	18286	18381	27640	27640					-5.062724653726036E-05
RTEEVKHVDFY	11	Unmodified	_RTEEVKHVDFY_					0	0	0		ENST00000471478.1_1_20:25196340-25204798:+|nuORF;ENST00000485936.5_1_20:25203457-25206230:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6	ENST00000471478.1_1_20:25196340-25204798:+|nuORF	ENST00000471478.1_1_20:25196340-25204798:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		3	474.905253	1421.69393	0.1936	9.1942E-05	0.13396	6.3618E-05	0.32756	0.00015556	474.9050324768217	29.736	0.15542	29.736	29.633	29.789	0	-0.081298	0.0014244	NaN	9.0676	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2618100			28766	8157	18286	18381							-5.062724653726036E-05
RTELPQFVSY	10	Unmodified	_RTELPQFVSY_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-SECPEP	HCT116MG_D190212_S2	2	620.3231811523438	2	620.322045	1238.62954	0.60616	0.00037601	-0.027293	-1.693E-05	0.57886	0.00035908	620.3221581357732	47.381	0.46492	47.259	47.078	47.543	-0.12175					9	8	2	0	0	0	0.28904	1	18104	18104		26.021	8.9078	1	14016000			28767	1687	18287	18382	27641	27641					0.01976782189194637
RTEPFQDGY	9	Unmodified	_RTEPFQDGY_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MSMS	HCT116MG_D190212_S1	1	556.7546997070312	2	556.753995	1111.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.085	1	33.085	32.585	33.585	0								0	0	0	0.27468	1	12231	12231		41.956	12.874	1				28768	4701	18288	18383	27642	27642					-0.05784912321473712
RTEPFQDGY	9	Unmodified	_RTEPFQDGY_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	HCT116MG_D190212_S2	2	556.6547241210938	2	556.753995	1111.49344	0.64814	0.00036085	0.191	0.00010634	0.83914	0.00046719	556.7539914118879	33.185	0.25952	32.974	32.845	33.104	-0.21135					9	4	3	0	0	0	0.14171	2	12298	12298;12329		49.933	39.109	1	33918000			28769	4701	18288	18383	27643;27644	27643					-0.05784912321473712
RTERRRWKVIY	11	Unmodified	_RTERRRWKVIY_					0	0	0			REV__ENST00000404977.6_1_1:204937408-204955114:+|nuORF	REV__ENST00000404977.6_1_1:204937408-204955114:+|nuORF	MSMS	HCT116MG_D190212_S1	1	521.638671875	3	521.639064	1561.89536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.748	1	49.748	49.248	50.248	0								0	0	0	0.9619	1	18964	18964		0.094841	0	1		+		28770	12929	18289	18384	27645	27645					0.13689090822344951
RTFEKIEEV	9	Unmodified	_RTFEKIEEV_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MSMS	HCT116MG_D190212_S1	1	575.8092041015625	2	575.808771	1149.60299	0.54962	0.00031648	0.39055	0.00022488	0.94017	0.00054136	575.8088955605589	31.264	0.31232	31.264	31.128	31.44	0					11	5	3	0	0	0	0.016636	2	11500	11465;11500		117.84	44.87	1	28465000			28771	2012;9413	18290	18385	27646;27647	27647					0.03417093297844076
RTFEKIEEV	9	Unmodified	_RTFEKIEEV_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MSMS	HCT116MG_D190212_S1	1	384.20782470703125	3	384.208273	1149.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.322	1	31.322	30.822	31.822	0								0	0	0	0.076127	1	11520	11520		62.869	37.987	1				28772	2012;9413	18290	18385	27648	27648					0.03417093297844076
RTFEKIEEV	9	Unmodified	_RTFEKIEEV_					0	0	0		ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	ENSG00000105486|ENST00000263274|LIG1	MULTI-MSMS	HCT116MG_D190212_S2	2	575.8093872070312	2	575.808771	1149.60299	0.62259	0.00035849	-0.027921	-1.6077E-05	0.59467	0.00034242	575.8088169992541	31.525	0.25899	31.276	31.095	31.354	-0.24883					7	4	2	0	0	0	0.025451	1	11642	11642		107.56	38.458	1	45855000			28773	2012;9413	18290	18385	27649	27649					0.03417093297844076
RTGARAKRALG	11	Unmodified	_RTGARAKRALG_					0	0	0		DIDO1|p.P2034Rfs*240|1|0.2|ENSG00000101191|chr20:62879855-62879855|G/-|frameshift_variant	DIDO1|p.P2034Rfs*240|1|0.2|ENSG00000101191|chr20:62879855-62879855|G/-|frameshift_variant	DIDO1|p.P2034Rfs*240|1|0.2|ENSG00000101191|chr20:62879855-62879855|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	386.238525390625	3	386.2389	1155.69487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.927	1	35.799	35.299	36.299	-0.12799								0	0	0	0.95705	1	13418	13418		2.6312	0	1				28774	675	18291	18386	27650	27650					0.12325241225539685
RTGKTQLSHT	10	Unmodified	_RTGKTQLSHT_					0	0	0		nc|ENSG00000100206|Q14565-2|DMC1;ENSG00000100206|ENST00000216024|DMC1	nc|ENSG00000100206|Q14565-2|DMC1	nc|ENSG00000100206|Q14565-2|DMC1	MULTI-MSMS	HCT116MG_D190212_S2	2	376.8773193359375	3	376.875516	1127.60472	-0.0088634	-3.3404E-06	3.5413	0.0013346	3.5324	0.0013313	376.8766874438615	27.559	0.25883	27.217	27.088	27.347	-0.34201					7	4	2	0	0	0	0.75066	1	10045	10045		10.315	0	1	20944000			28775	1673	18292	18387	27651	27651					0.04602147106470511
RTGRLVKI	8	Unmodified	_RTGRLVKI_					0	0	0		ENST00000493021.5_1_2:162567177-162757603:+|nuORF	ENST00000493021.5_1_2:162567177-162757603:+|nuORF	ENST00000493021.5_1_2:162567177-162757603:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	471.81378173828125	2	471.813993	941.613434	0.3014	0.00014221	-0.030852	-1.4556E-05	0.27055	0.00012765	471.8138336147334	58.274	0.20136	58.104	57.994	58.196	-0.1703					5	3	2	0	0	0	0.33249	1	22548	22548		4.3292	1.7518	1	19905000			28776	8353	18293	18388	27652	27652					0.14029165533622745
RTKIAKLQKA	10	Unmodified	_RTKIAKLQKA_					0	0	0			REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	REV__tr|U7T3X5|U7T3X5_FUSNUProbableGTP-bindingproteinEngBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=engBPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	386.2567443847656	3	386.255669	1155.74518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.043	1	45.671	45.171	46.171	-0.37206								0	0	0	0.96337	1	17006	17006		1.7423	0.78	1		+		28777	17960	18294	18389	27653	27653					0.1735335083069458
RTKKARGMFI	10	Unmodified	_RTKKARGMFI_					0	0	0		CCDC181|p.H423Afs*24|1|0.4|ENSG00000117477|chr1:169397341-169397342|-/T|frameshift_variant	CCDC181|p.H423Afs*24|1|0.4|ENSG00000117477|chr1:169397341-169397342|-/T|frameshift_variant	CCDC181|p.H423Afs*24|1|0.4|ENSG00000117477|chr1:169397341-169397342|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	604.3573608398438	2	604.358242	1206.70193	0.38724	0.00023403	-0.029479	-1.7816E-05	0.35776	0.00021622	604.3581979991519	59.873	0.59955	59.873	59.453	60.052	0					37	23	2	0	0	0	0.89272	1	23044	23044		0.40072	0	1	1091900			28778	347	18295	18390	27654	27654					0.10684837781764145
RTKKKIPFL	9	Unmodified	_RTKKKIPFL_					0	0	0		nc|ENSG00000168952|Q8NFX7-2|STXBP6;ENSG00000168952|ENST00000323944|STXBP6	nc|ENSG00000168952|Q8NFX7-2|STXBP6	nc|ENSG00000168952|Q8NFX7-2|STXBP6	MSMS	HCT116MG_D190212_S1	1	377.5843200683594	3	377.585126	1129.73355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.36	1	14.36	13.86	14.86	0								0	0	0	0.76991	1	4694	4694		1.1933	0	1				28779	5042	18296	18391	27655	27655					0.17387153807339928
RTKKKPARRRY	11	Unmodified	_RTKKKPARRRY_					0	0	0		nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	MSMS	HCT116MG_D190212_S4	4	730.458984375	2	730.457668	1458.90078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.604	1	61.35	60.85	61.85	-0.25457								0	0	0	0.96149	1	23245	23245		0.30703	0	1				28780	9520	18297	18392	27656	27656					0.18968814404820478
RTKLAIDQIV	10	Unmodified	_RTKLAIDQIV_					0	0	0			REV__nc|ENSG00000119979|Q8TCE6-2|DENND10	REV__nc|ENSG00000119979|Q8TCE6-2|DENND10	MSMS	HCT116MG_D190212_S4	4	386.2381591796875	3	386.239796	1155.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.534	1	44.161	43.661	44.661	-0.37326								0	0	0	0.96337	1	16410	16410		1.7423	0	1		+		28781	11682	18298	18393	27657	27657					0.12593651839824815
RTKLMALRH	9	Unmodified	_RTKLMALRH_					0	0	0			REV__KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant	REV__KIF18A|p.R666Kfs*29|1|0.12|ENSG00000121621|chr11:28036616-28036617|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	563.3389282226562	2	563.33731	1124.66007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.958	1	39.579	39.079	40.079	-0.37936								0	0	0	0.76978	1	14645	14645		1.6526	0.96225	1		+		28782	11719	18299	18394	27658	27658					0.10272282093228569
RTKNKKKKQQA	11	Unmodified	_RTKNKKKKQQA_					0	0	0			REV__ENST00000398514.7_2_5:146833397-146833517:-|nuORF	REV__ENST00000398514.7_2_5:146833397-146833517:-|nuORF	MSMS	HCT116MG_D190212_S3	3	453.2859191894531	3	453.284398	1356.83137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.253	1	47.937	47.437	48.437	-0.31596								0	0	0	0.96121	1	18143	18143		0.45452	0.046251	1		+		28783	15377	18300	18395	27659	27659					0.16722310665409168
RTKRGPGP	8	Unmodified	_RTKRGPGP_					0	0	0		ENSG00000152270|ENST00000282096|PDE3B;nc|ENSG00000152270|Q13370-2|PDE3B;ENST00000534317.1_1_11:14665864-14793584:+|nuORF	ENSG00000152270|ENST00000282096|PDE3B	ENSG00000152270|ENST00000282096|PDE3B	MULTI-MSMS	HCT116MG_D190212_S1	1	434.7593078613281	2	434.759218	867.503883	0.031788	1.382E-05	0.73478	0.00031945	0.76657	0.00033327	434.75950144916015	47.29	2.2243	47.29	46.595	48.819	0					86	43	5	0	0	0	0.8506	1	18038	18038		5.2307	0	1	6832499999.999999			28784	4145	18301	18396	27660	27660					0.06483159914284897
RTKTVKKTL	9	Unmodified	_RTKTVKKTL_					0	0	0		nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	nc|ENSG00000176406|Q9UQ26-2|RIMS2	MULTI-MSMS	HCT116MG_D190212_S1	1	537.8528442382812	2	537.853316	1073.69208	0.35687	0.00019194	-0.46813	-0.00025178	-0.11126	-5.9842E-05	537.8528213037245	58.236	0.27761	58.236	58.135	58.413	0					10	5	3	0	0	0	0.76814	1	22457	22457		0.52476	0	1	63776000			28785	5418	18302	18397	27661	27661					0.15817973048024214
RTLAEIAKV	9	Unmodified	_RTLAEIAKV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S1	1	500.8109436035156	2	500.811116	999.60768	0.48259	0.00024169	-0.037019	-1.8539E-05	0.44557	0.00022315	500.8110587489889	35.039	0.30648	35.039	34.909	35.215	0					9	5	2	0	0	0	0.02327	1	13025	13025		93.166	18.966	1	33591000			28786	3974	18303	18398	27662	27662					0.10786022231275183
RTLAEIAKV	9	Unmodified	_RTLAEIAKV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S2	2	500.8116760253906	2	500.811116	999.60768	0.43345	0.00021708	0.18362	9.1958E-05	0.61707	0.00030904	500.811199970854	35.153	0.25888	34.994	34.813	35.072	-0.15834					7	4	2	0	0	0	0.040027	1	13104	13104		79.596	5.3967	1	43459000			28787	3974	18303	18398	27663	27663					0.10786022231275183
RTLETLIRL	9	Unmodified	_RTLETLIRL_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	HCT116MG_D190212_S1	1	557.8499755859375	2	557.850773	1113.68699	0.32184	0.00017954	-0.88059	-0.00049124	-0.55875	-0.0003117	557.8503192770016	48.845	0.25719	48.845	48.717	48.974	0					8	4	2	0	0	0	0.0056012	1	18601	18601		132.38	36.013	1	23651000			28788	9427	18304	18399	27664	27664					0.13469669185428756
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S1	1	501.6354064941406	3	501.634424	1501.88144	0.48176	0.00024167	-0.016206	-8.1296E-06	0.46556	0.00023354	501.63430865752673	53.105	0.87358	53.105	52.485	53.359	0					54	16	5	0	0	0	0.74191	1	20146	20146		0.094841	0.094841	1	93713000			28789	4497	18305	18400	27665	27665					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S1	1	752.4497680664062	2	751.947998	1501.88144	0.90784	0.00068265	-0.05537	-4.1635E-05	0.85247	0.00064101	751.947852787605	53.087	0.87358	53.087	52.485	53.359	0					45	16	4	0	0	0	0.74191	2	20155	20155;20386		0	0	1	86562000			28790	4497	18305	18400	27666;27667	27666					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S1	1	503.3056945800781	3	501.634424	1501.88144	0.48601	0.0002438	-0.0011947	-5.9928E-07	0.48482	0.0002432	501.6343759695356	54.26	5.1376	54.26	51.704	56.841	0					249	99	6	0	0	0	0.74191	6	20250	20250;20452;20517;21021;21097;21258		0.50596	0.41111	1	998670000			28791	4497	18305	18400	27668;27669;27670;27671;27672;27673	27668					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S1	1	751.94921875	2	751.947998	1501.88144	0.91279	0.00068637	0.050884	3.8262E-05	0.96368	0.00072463	751.9479128497514	54.257	2.1453	54.257	53.307	55.452	0					138	41	5	0	0	0	0.74191	2	20864	20864;21099		0	0	1	955280000			28792	4497	18305	18400	27674;27675	27674					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S2	2	501.6344909667969	3	501.634424	1501.88144	0.4212	0.00021129	0.057248	2.8718E-05	0.47845	0.00024001	501.63434742852496	54.875	2.5138	54.687	53.071	55.585	-0.18797					156	48	5	0	0	0	0.74191	1	21266	21266		0.094841	0.094841	1	262480000			28793	4497	18305	18400	27676	27676					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S4	4	751.9493408203125	2	751.947998	1501.88144	0.93077	0.00069989	-0.1002	-7.5348E-05	0.83057	0.00062454	752.4494640719856	54.307	0.57325	53.983	53.723	54.296	-0.32348					16	10	2	0	0	0	0.74191	1	20329	20329		0	0	1	3419000			28794	4497	18305	18400	27677	27677					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S4	4	501.6343078613281	3	501.634424	1501.88144	0.45937	0.00023044	0.072392	3.6314E-05	0.53176	0.00026675	501.63425879128124	55.065	1.0942	54.748	54.25	55.344	-0.31774					62	20	4	0	0	0	0.74191	1	20566	20566		0.094841	0.094841	1	19131000			28795	4497	18305	18400	27678	27678					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MSMS	HCT116MG_D190212_S4	4	752.4497680664062	2	751.947998	1501.88144	0.95764	0.00072009	-0.025635	-1.9276E-05	0.932	0.00070082	751.9479678627742	55.106	0.93797	54.788	54.25	55.188	-0.31775					48	17	4	0	0	0	0.74191	1	20569	20569		0.26902	0	1	15594000			28796	4497	18305	18400	27679	27679					0.15057858113891598
RTLKTLRSS	9	Unmodified	_RTLKTLRSS_					0	0	0			REV__ENSG00000159592|ENST00000355105|GPBP1L1	REV__ENSG00000159592|ENST00000355105|GPBP1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	531.3251953125	2	531.324922	1060.63529	0.59616	0.00031675	0.051707	2.7473E-05	0.64786	0.00034423	531.3248503971582	51.943	1.7505	51.759	51.013	52.763	-0.18369					96	33	5	0	0	0	0.71345	1	19738	19738		4.3292	0	1	436730000	+		28797	12808	18306	18401	27680	27680					0.10739925491520808
RTLPLARSS	9	Unmodified	_RTLPLARSS_					0	0	0		ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A	ENST00000473039.5_1_9:126143713-126520026:-|nuORF	ENST00000473039.5_1_9:126143713-126520026:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	501.3011779785156	2	500.79854	999.582528	0.42578	0.00021323	0.15621	7.8229E-05	0.58198	0.00029146	500.7985209769842	51.011	1.3986	50.833	50.184	51.583	-0.17868					72	26	4	0	0	0	0.63131	1	19385	19385		9.3831	2.0939	1	264860000			28798	2648	18307	18402	27681	27681					0.08271967428709104
RTLPLARSS	9	Unmodified	_RTLPLARSS_					0	0	0		ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A	ENST00000473039.5_1_9:126143713-126520026:-|nuORF	ENST00000473039.5_1_9:126143713-126520026:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	500.79854	999.582528	0.43117	0.00021593	0.026413	1.3227E-05	0.45758	0.00022916	500.7983906855085	51.46	0.83846	51.149	50.753	51.591	-0.31166	0.145	-0.0001033	NaN	9.3831	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30549000			28799	2648	18307	18402							0.08271967428709104
RTLPLARSS	9	Unmodified	_RTLPLARSS_					0	0	0		ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A	ENST00000473039.5_1_9:126143713-126520026:-|nuORF	ENST00000473039.5_1_9:126143713-126520026:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	500.79854	999.582528	0.3496	0.00017508	0.16301	8.1634E-05	0.51261	0.00025672	500.7984938356218	51.38	1.6093	51.03	50.525	52.135	-0.35028	0.02601	3.3516E-05	NaN	9.3831	74	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72598000			28800	2648	18307	18402							0.08271967428709104
RTLRQAFLA	9	Unmodified	_RTLRQAFLA_					0	0	0		ENSG00000163792|ENST00000296096|TCF23	ENSG00000163792|ENST00000296096|TCF23	ENSG00000163792|ENST00000296096|TCF23	MSMS	HCT116MG_D190212_S2	2	359.2177429199219	3	359.217214	1074.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.162	1	44.084	43.584	44.584	-0.078373								0	0	0	0.76902	1	16766	16766		2.4985	0.65425	1				28801	4630	18308	18403	27682	27682					0.09548246699705487
RTMENLVEL	9	Unmodified	_RTMENLVEL_					0	0	0		ENSG00000078246|ENST00000448120|TULP3;nc|ENSG00000078246|O75386-2|TULP3	ENSG00000078246|ENST00000448120|TULP3	ENSG00000078246|ENST00000448120|TULP3	MSMS	HCT116MG_D190212_S1	1	552.7885131835938	2	552.789524	1103.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.994	1	47.994	47.494	48.494	0								0	0	0	0.16977	1	18250	18250		49.554	3.5333	1				28802	1362	18309	18404	27683	27683					0.016854643916758505
RTNDHTDTYA	10	Unmodified	_RTNDHTDTYA_					0	0	0			REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MSMS	HCT116MG_D190212_S4	4	597.261962890625	2	597.262716	1192.51088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.202	1	42.827	42.327	43.327	-0.37493								0	0	0	0.89062	1	15885	15885		17.113	0.96379	1		+		28803	13864	18310	18405	27684	27684					-0.07767616786463805
RTNEEIHSE	9	Unmodified	_RTNEEIHSE_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	HCT116MG_D190212_S3	3	372.17657470703125	3	372.175632	1113.50507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.318	1	29.096	28.596	29.596	-0.22195								0	0	0	0.76823	1	10646	10646		7.1017	2.2047	1				28804	991	18311	18406	27685	27685					-0.0471471529815517
RTNEEIHSE	9	Unmodified	_RTNEEIHSE_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	HCT116MG_D190212_S4	4	372.1764221191406	3	372.175632	1113.50507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.439	1	29.09	28.59	29.59	-0.34921								0	0	0	0.76823	1	10631	10631		7.1017	2.2047	1				28805	991	18311	18406	27686	27686					-0.0471471529815517
RTNEEIHSE	9	Unmodified	_RTNEEIHSE_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	HCT116MG_D190212_S4	4	372.1763916015625	3	372.175632	1113.50507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.954	1	31.578	31.078	32.078	-0.37529								0	0	0	0.76823	1	11618	11618		7.1017	2.2047	1				28806	991	18311	18406	27687	27687					-0.0471471529815517
RTNEGVIEF	9	Unmodified	_RTNEGVIEF_					0	0	0		SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant;SRSF6|p.A312Gfs*18|1|0.11|ENSG00000124193|chr20:43460957-43460958|-/A|frameshift_variant;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6	SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant	SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	532.77197265625	2	532.772188	1063.52982	0.20334	0.00010834	-0.058032	-3.0918E-05	0.14531	7.7418E-05	532.77216628495	44.307	0.37524	44.307	44.088	44.464	0					11	6	2	0	0	0	0.0094709	1	16760	16760		114.65	36.665	1	31984000			28807	2832	18312	18407	27688	27688					0.0005996457523451681
RTNEGVIEF	9	Unmodified	_RTNEGVIEF_					0	0	0		SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant;SRSF6|p.A312Gfs*18|1|0.11|ENSG00000124193|chr20:43460957-43460958|-/A|frameshift_variant;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6	SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant	SRSF6|p.G240Afs*50|1|0.35|ENSG00000124193|chr20:43460742-43460742|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	532.772216796875	2	532.772188	1063.52982	0.20628	0.0001099	0.051884	2.7642E-05	0.25817	0.00013754	532.772236171249	44.188	0.36451	44.11	43.916	44.281	-0.078373					12	6	3	0	0	0	0.01405	1	16775	16775		103.35	25.204	1	86299000			28808	2832	18312	18407	27689	27689					0.0005996457523451681
RTPKISKPI	9	Unmodified	_RTPKISKPI_					0	0	0		nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2	nc|ENSG00000118523|P29279-2|CCN2	nc|ENSG00000118523|P29279-2|CCN2	MSMS	HCT116MG_D190212_S3	3	520.3328247070312	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.795	1	55.507	55.007	56.007	-0.28773								0	0	0	0.7696	1	21167	21167		2.3027	0	1				28809	2610	18313	18408	27690	27690					0.13718301502262875
RTQAQRRLK	9	Unmodified	_RTQAQRRLK_					0	0	0		nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	MSMS	HCT116MG_D190212_S3	3	386.2384948730469	3	386.2389	1155.69487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.892	1	27.703	27.203	28.203	-0.18847								0	0	0	0.76998	1	10071	10071		0.96228	0.33545	1				28810	9670	18314	18409	27691	27691					0.12325241225539685
RTQAQRRLK	9	Unmodified	_RTQAQRRLK_					0	0	0		nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	MSMS	HCT116MG_D190212_S4	4	386.2384338378906	3	386.2389	1155.69487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.827	1	40.449	39.949	40.949	-0.37819								0	0	0	0.76954	1	14992	14992		2.4985	0.063701	1				28811	9670	18314	18409	27692	27692					0.12325241225539685
RTQAQRRLK	9	Unmodified	_RTQAQRRLK_					0	0	0		nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	nc|ENSG00000284874|Q99719-2|SEPTIN5	MSMS	HCT116MG_D190212_S4	4	386.2384033203125	3	386.2389	1155.69487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.309	1	44.936	44.436	45.436	-0.37266								0	0	0	0.76954	1	16709	16709		2.4985	0	1				28812	9670	18314	18409	27693	27693					0.12325241225539685
RTQHKDHSDNE	11	Unmodified	_RTQHKDHSDNE_					0	0	0		nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;ENSG00000183878|ENST00000545955|UTY	nc|ENSG00000183878|O14607-5|UTY	nc|ENSG00000183878|O14607-5|UTY	MSMS	HCT116MG_D190212_S1	1	683.8094482421875	2	683.808353	1365.60215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.89	1	11.89	11.39	12.39	0								0	0	0	0.96208	1	3781	3781		0	0	1				28813	5749	18315	18410	27694	27694					-0.06602353089124335
RTQHKDHSDNE	11	Unmodified	_RTQHKDHSDNE_					0	0	0		nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;ENSG00000183878|ENST00000545955|UTY	nc|ENSG00000183878|O14607-5|UTY	nc|ENSG00000183878|O14607-5|UTY	MSMS	HCT116MG_D190212_S1	1	683.8091430664062	2	683.808353	1365.60215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.44	1	12.44	11.94	12.94	0								0	0	0	0.96208	1	3992	3992		0	0	1				28814	5749	18315	18410	27695	27695					-0.06602353089124335
RTQRPSLV	8	Unmodified	_RTQRPSLV_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22;PTPN22|p.E496*|1|0.07|ENSG00000134242|chr1:113837915-113837916|-/AA|frameshift_variant	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	HCT116MG_D190212_S1	1	478.78533935546875	2	478.785433	955.556313	0.107	5.1229E-05	0.31982	0.00015313	0.42682	0.00020435	478.78551142131914	49.415	1.8583	49.415	48.819	50.678	0					67	35	5	0	0	0	0.81191	1	18778	18778		10.074	2.7847	1	4632200000			28815	3268	18316	18411	27696	27696					0.0767569825721921
RTREADMCP	9	Unmodified	_RTREADMCP_					0	0	0		ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	MSMS	HCT116MG_D190212_S1	1	539.7404174804688	2	539.742051	1077.46955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.122	1	19.122	18.622	19.622	0								0	0	0	0.768	1	6613	6613		7.9102	2.1497	1				28816	3213	18317	18412	27697	27697					-0.0660879235115317
RTRGARPRLRS	11	Unmodified	_RTRGARPRLRS_					0	0	0			REV__PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	REV__PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	663.4039916992188	2	663.402892	1324.79123	0.81898	0.00054331	1.1777	0.00078128	1.9967	0.0013246	663.4032598576189	54.949	0.25446	54.949	54.79	55.044	0					7	4	2	0	0	0	0.74191	1	21096	21096		4.897	3.2444	1	118300000	+		28817	10749	18318	18413	27698	27698					0.14182808785494672
RTRGRLTAPPL	11	Unmodified	_RTRGRLTAPPL_					0	0	0		ENST00000360271.3_1_9:139972605-139973049:+|nuORF	ENST00000360271.3_1_9:139972605-139973049:+|nuORF	ENST00000360271.3_1_9:139972605-139973049:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	619.37744140625	2	619.37802	1236.74149	0.67945	0.00042084	-0.97116	-0.00060152	-0.29171	-0.00018068	619.3771023089375	54.153	0.51048	54.153	53.873	54.384	0					22	9	4	0	0	0	0.74111	1	20744	20744		12.241	0	1	531000000			28818	7346	18319	18414	27699	27699					0.1325868105684549
RTRGRLTAPPL	11	Unmodified	_RTRGRLTAPPL_					0	0	0		ENST00000360271.3_1_9:139972605-139973049:+|nuORF	ENST00000360271.3_1_9:139972605-139973049:+|nuORF	ENST00000360271.3_1_9:139972605-139973049:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	619.3770751953125	2	619.37802	1236.74149	0.4346	0.00026918	-0.45031	-0.00027891	-0.015706	-9.7281E-06	619.3772763012689	54.824	0.56189	54.636	54.457	55.019	-0.18797					28	10	4	0	0	0	0.74191	1	21123	21123		8.1555	2.8586	1	97990000			28819	7346	18319	18414	27700	27700					0.1325868105684549
RTRKRRRWRYS	11	Unmodified	_RTRKRRRWRYS_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MSMS	HCT116MG_D190212_S2	2	810.97216796875	2	810.974548	1619.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.961	1	17.605	17.105	18.105	-0.35647								0	0	0	0.96208	1	6145	6145		0	0	1				28820	7864	18320	18415	27701	27701					0.14937235896582024
RTRPRLRRLA	10	Unmodified	_RTRPRLRRLA_					0	0	0			REV__NCF4|p.D293Ifs*11|1|0.31|ENSG00000100365|chr22:36877676-36877676|G/-|frameshift_variant	REV__NCF4|p.D293Ifs*11|1|0.31|ENSG00000100365|chr22:36877676-36877676|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	432.2805480957031	3	432.281211	1293.8218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.091	1	58.811	58.311	59.311	-0.2804								0	0	0	0.97045	1	22228	22228		0.15932	0	1		+		28821	11080	18321	18416	27702	27702					0.18664587170565028
RTRRPRRIP	9	Unmodified	_RTRRPRRIP_					0	0	0		ENST00000565644.5_1_16:87864928-87865366:-|nuORF	ENST00000565644.5_1_16:87864928-87865366:-|nuORF	ENST00000565644.5_1_16:87864928-87865366:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.2588806152344	3	403.258406	1206.75339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.07	1	43.07	42.57	43.57	0								0	0	0	0.76875	1	16262	16262		5.2969	1.4206	1				28822	8856	18322	18417	27703	27703					0.1582834259070296
RTSDRTLLY	9	Unmodified	_RTSDRTLLY_					0	0	0		ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	MSMS	HCT116MG_D190212_S2	2	562.7943115234375	2	562.806562	1123.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.271	1	33.078	32.578	33.578	-0.19297								0	0	0	0.088354	1	12339	12339		59.368	13.669	1				28823	8931	18323	18418	27704	27704					0.04171628874973976
RTSDRTLLY	9	Unmodified	_RTSDRTLLY_					0	0	0		ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	MSMS	HCT116MG_D190212_S2	2	562.8079833984375	2	562.806562	1123.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.302	1	33.109	32.609	33.609	-0.19297								0	0	0	0.14307	1	12351	12351		51.488	5.7884	1				28824	8931	18323	18418	27705	27705					0.04171628874973976
RTSSQRSTLTY	11	Unmodified	_RTSSQRSTLTY_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MSMS	HCT116MG_D190212_S1	1	650.3367919921875	2	650.336215	1298.65788	0.7486	0.00048684	0.13691	8.9041E-05	0.88552	0.00057588	650.3363258799195	23.967	0.20892	23.967	23.837	24.045	0					8	3	3	0	0	0	0.684	1	8581	8581		26.021	12.978	1	11647000			28825	3856	18324	18419	27706	27706					0.020494800984806716
RTSSQRSTLTY	11	Unmodified	_RTSSQRSTLTY_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MSMS	HCT116MG_D190212_S1	1	433.8930969238281	3	433.893236	1298.65788	0.069286	3.0063E-05	-0.37189	-0.00016136	-0.3026	-0.0001313	433.89305241897415	24.004	0.20892	24.004	23.837	24.045	0					5	3	2	0	0	0	0.63585	1	8586	8586		31.462	18.606	1	5019700			28826	3856	18324	18419	27707	27707					0.020494800984806716
RTSSQRSTLTY	11	Unmodified	_RTSSQRSTLTY_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MSMS	HCT116MG_D190212_S2	2	650.3367919921875	2	650.336215	1298.65788	0.68668	0.00044657	-0.2014	-0.00013097	0.48529	0.0003156	650.3360375970569	24.646	0.26128	24.266	24.082	24.344	-0.38003					7	4	2	0	0	0	0.47377	1	8845	8845		64.692	46.545	1	23133000			28827	3856	18324	18419	27708	27708					0.020494800984806716
RTSSQRSTLTY	11	Unmodified	_RTSSQRSTLTY_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	650.336215	1298.65788	0.7486	0.00048684	0.13691	8.9041E-05	0.88552	0.00057588	650.3363258799195	23.967	0.20892	23.967	23.837	24.045	0	-0.1492	8.4395E-05	NaN	64.692	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11647000			28828	3856	18324	18419							0.020494800984806716
RTSSQRSTLTY	11	Unmodified	_RTSSQRSTLTY_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MATCH	HCT116MG_D190212_S2	2		3	433.893236	1298.65788	0.07049	3.0585E-05	0.37716	0.00016365	0.44765	0.00019423	434.22795544665746	24.625	0.15693	24.245	24.135	24.292	-0.38003	0.12044	0.00089875	NaN	31.462	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9976500			28829	3856	18324	18419							0.020494800984806716
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000166426|ENST00000299529|CRABP1;ENSG00000143320|ENST00000368222|CRABP2	ENSG00000166426|ENST00000299529|CRABP1	ENSG00000166426|ENST00000299529|CRABP1	MULTI-MSMS	HCT116MG_D190212_S1	1	554.311279296875	2	554.31148	1106.60841	0.67214	0.00037258	-0.47058	-0.00026085	0.20156	0.00011173	554.3110593719554	37.681	0.26055	37.681	37.499	37.759	0					8	4	3	0	0	0	0.051033	1	14093	14093		74.2	26.451	1	10631000			28830	3796	18325	18420	27709	27709					0.05936816880330298
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000166426|ENST00000299529|CRABP1;ENSG00000143320|ENST00000368222|CRABP2	ENSG00000166426|ENST00000299529|CRABP1	ENSG00000166426|ENST00000299529|CRABP1	MULTI-MSMS	HCT116MG_D190212_S2	2	554.3115234375	2	554.31148	1106.60841	0.11543	6.3984E-05	0.39005	0.00021621	0.50548	0.00028019	554.3114134005245	37.718	0.30861	37.615	37.486	37.795	-0.10318					6	5	2	0	0	0	0.45684	1	14178	14178		19.362	4.1135	1	30661000			28831	3796	18325	18420	27710	27710					0.05936816880330298
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000166426|ENST00000299529|CRABP1;ENSG00000143320|ENST00000368222|CRABP2	ENSG00000166426|ENST00000299529|CRABP1	ENSG00000166426|ENST00000299529|CRABP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	554.31148	1106.60841	0.11543	6.3984E-05	0.39005	0.00021621	0.50548	0.00028019	554.3114134005245	37.718	0.30861	37.615	37.486	37.795	-0.10318	-0.033264	0.00058617	NaN	74.2	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30661000			28832	3796	18325	18420							0.05936816880330298
RTTREVLV	8	Unmodified	_RTTREVLV_					0	0	0			REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	REV__TG|p.W2685Gfs*26|2|0.22|ENSG00000042832|chr8:133133520-133133520|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	487.2930908203125	2	487.293091	972.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.355	1	48.355	47.855	48.855	0								0	0	0	0.8837	1	18397	18397		6.2058	1.4498	1		+		28833	17631	18326	18421	27711	27711					0.08424565054428967
RTVKGVLI	8	Unmodified	_RTVKGVLI_					0	0	0		ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.E1377Rfs*10|1|0.37|ENSG00000148143|chr9:106928035-106928036|-/T|frameshift_variant;ZNF462|p.P1613Rfs*11|1|0.4|ENSG00000148143|chr9:106928746-106928746|C/-|frameshift_variant;nc|ENSG00000148143|Q96JM2-2|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	ENSG00000148143|ENST00000277225|ZNF462	MSMS	HCT116MG_D190212_S1	1	443.29791259765625	2	443.297645	884.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.112	1	39.112	38.612	39.612	0								0	0	0	0.62663	1	14663	14663		36.044	1.9418	1				28834	4005	18327	18422	27712	27712					0.13382958410761603
RTVRRRWRMRP	11	Unmodified	_RTVRRRWRMRP_					0	0	0			REV__ENST00000592505.1_1_19:11038470-11038518:-|nuORF	REV__ENST00000592505.1_1_19:11038470-11038518:-|nuORF	MSMS	HCT116MG_D190212_S4	4	523.9754638671875	3	523.975905	1568.90588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.405	1	33.023	32.523	33.523	-0.38223								0	0	0	0.96111	1	12160	12160		0.50596	0.41111	1		+		28835	14591	18328	18423	27713	27713					0.14418794995776807
RTVRRRWRMRP	11	Unmodified	_RTVRRRWRMRP_					0	0	0			REV__ENST00000592505.1_1_19:11038470-11038518:-|nuORF	REV__ENST00000592505.1_1_19:11038470-11038518:-|nuORF	MSMS	HCT116MG_D190212_S4	4	523.9769287109375	3	523.975905	1568.90588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.882	1	36.497	35.997	36.997	-0.38486								0	0	0	0.9619	1	13514	13514		0.094841	0	1		+		28836	14591	18328	18423	27714	27714					0.14418794995776807
RTWENIQHV	9	Unmodified	_RTWENIQHV_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MSMS	HCT116MG_D190212_S2	2	591.8051147460938	2	591.804354	1181.59415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.608	1	31.359	30.859	31.859	-0.24883								0	0	0	0.024942	1	11666	11666		87.258	39.51	1				28837	2787	18329	18424	27715	27715					0.010621644520369955
RVAAGRAK	8	Unmodified	_RVAAGRAK_					0	0	0			REV__ENSG00000171234|ENST00000305231|UGT2B7	REV__ENSG00000171234|ENST00000305231|UGT2B7	MSMS	HCT116MG_D190212_S3	3	414.7618408203125	2	414.761761	827.508969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.407	1	53.104	52.604	53.604	-0.30305								0	0	0	0.8837	1	20213	20213		0.69038	0	1		+		28838	13338	18330	18425	27716	27716					0.08831463776880355
RVADYIVKV	9	Unmodified	_RVADYIVKV_					0	0	0		ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	MULTI-MSMS	HCT116MG_D190212_S1	1	531.8186645507812	2	531.818941	1061.62333	-0.50938	-0.0002709	0.14072	7.4836E-05	-0.36866	-0.00019606	531.818929188347	38.149	0.208	38.149	38.019	38.227	0					9	3	3	0	0	0	0.10244	1	14276	14276		57.722	17.772	1	48786000			28839	3903	18331	18426	27717	27717					0.09498308748311501
RVADYIVKV	9	Unmodified	_RVADYIVKV_					0	0	0		ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	MULTI-MSMS	HCT116MG_D190212_S2	2	531.8190307617188	2	531.818941	1061.62333	0.275	0.00014625	-0.11813	-6.2826E-05	0.15687	8.3425E-05	531.8187660825099	38.182	0.31048	38.089	37.908	38.219	-0.09301					12	5	3	0	0	0	0.1935	1	14337	14337		41.956	7.5538	1	109810000			28840	3903	18331	18426	27718	27718					0.09498308748311501
RVADYIVKV	9	Unmodified	_RVADYIVKV_					0	0	0		ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	MULTI-MSMS	HCT116MG_D190212_S3	3	531.8193359375	2	531.818941	1061.62333	0.41405	0.0002202	0.20346	0.0001082	0.61751	0.00032841	531.8190472267911	38.42	0.20732	38.118	37.989	38.196	-0.30137					5	3	2	0	0	0	0.26031	1	14259	14259		34.932	13.395	1	5703500			28841	3903	18331	18426	27719	27719					0.09498308748311501
RVAPEEHPVL	10	Unmodified	_RVAPEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S1	1	573.817138671875	2	573.81693	1145.61931	0.49218	0.00028242	0.0016463	9.4466E-07	0.49383	0.00028337	573.8169386505175	29.503	0.31241	29.503	29.321	29.633	0					13	5	3	0	0	0	0.028311	1	10788	10788		133.05	36.941	1	40729000			28842	1322	18332	18427	27720	27720					0.052322192545943835
RVDEEPTTL	9	Unmodified	_RVDEEPTTL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;ENST00000608163.1_1_10:46215370-46222350:-|nuORF	nc|ENSG00000172661|Q9Y4E1-3|WASHC2C	nc|ENSG00000172661|Q9Y4E1-3|WASHC2C	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.777099609375	2	530.269478	1058.5244	0.19241	0.00010203	-0.24512	-0.00012998	-0.052709	-2.795E-05	530.2693824267061	30.527	0.30837	30.243	30.13	30.439	-0.28453					7	5	2	0	0	0	0.15584	1	11261	11261		49.554	9.6046	1	13653000			28843	5255	18333	18428	27721	27721					-0.0025175900723297673
RVDELLEKY	9	Unmodified	_RVDELLEKY_					0	0	0		ENST00000441170.1_1_4:118496255-118496735:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	ENST00000441170.1_1_4:118496255-118496735:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	583.1744995117188	2	582.816596	1163.61864	-0.091922	-5.3574E-05	-0.29429	-0.00017152	-0.38621	-0.00022509	582.8161838505722	38.045	0.20766	38.045	37.916	38.123	0					5	3	2	0	0	0	0.043159	1	14227	14227		78.06	16.459	1	8197300			28844	2775	18334	18429	27722	27722					0.043373798149104914
RVDENNPEY	9	Unmodified	_RVDENNPEY_					0	0	0		ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000540541.1_1_4:2877642-2877930:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	568.2545776367188	2	568.25436	1134.49417	0.35321	0.00020071	-0.072818	-4.1379E-05	0.28039	0.00015933	568.2542502693032	22.089	0.20894	22.089	21.959	22.167	0					6	3	2	0	0	0	0.066823	1	7825	7825		66.457	30.33	1	9764300			28845	57	18335	18430	27723	27723					-0.06770117672431297
RVDENNPEY	9	Unmodified	_RVDENNPEY_					0	0	0		ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000540541.1_1_4:2877642-2877930:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	568.254638671875	2	568.25436	1134.49417	0.52264	0.00029699	-0.083595	-4.7503E-05	0.43905	0.00024949	568.2541805596916	22.56	0.15521	22.175	22.051	22.206	-0.3852					6	2	3	0	0	0	0.026999	1	8004	8004		89.401	43.701	1	15073000			28846	57	18335	18430	27724	27724					-0.06770117672431297
RVDFQGMEY	9	Unmodified	_RVDFQGMEY_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ENST00000478788.1_1_7:151200408-151200546:+|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	HCT116MG_D190212_S1	1	572.7591552734375	2	572.758223	1143.50189	0.62779	0.00035957	0.057577	3.2978E-05	0.68537	0.00039255	572.7587079721286	41.419	0.20863	41.419	41.289	41.498	0					8	3	3	0	0	0	0.1935	1	15623	15623		41.956	16.556	1	10613000			28847	2710	18336	18431	27725	27725					-0.06411681676490844
RVDGRGCEDY	10	Unmodified	_RVDGRGCEDY_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MSMS	HCT116MG_D190212_S2	2	585.2526245117188	2	585.253837	1168.49312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.105	1	20.722	20.222	21.222	-0.38288								0	0	0	0.82154	1	7410	7410		26.021	5.5671	1				28848	1326	18337	18432	27726	27726					-0.08438655312988885
RVDGRMLHY	9	Unmodified	_RVDGRMLHY_					0	0	0		ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	382.8659973144531	3	382.866075	1145.5764	-0.038898	-1.4893E-05	0.050173	1.9209E-05	0.011275	4.3167E-06	382.8660938599849	27.982	0.20827	27.982	27.852	28.06	0					8	3	3	0	0	0	0.034046	1	10185	10185		67.081	43.291	1	16220000			28849	2265	18338	18433	27727	27727					0.009431259255279656
RVDGRMLHY	9	Unmodified	_RVDGRMLHY_					0	0	0		ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	ENSG00000110841|ENST00000228425|PPFIBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	382.8656921386719	3	382.866075	1145.5764	-0.10355	-3.9645E-05	-0.15252	-5.8394E-05	-0.25607	-9.8039E-05	382.8659624244279	28.437	0.25864	28.107	27.926	28.184	-0.32987					8	4	2	0	0	0	0.0068427	1	10377	10377		111.31	81.468	1	69011000			28850	2265	18338	18433	27728	27728					0.009431259255279656
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S1	1	583.3214721679688	2	583.321848	1164.62914	0.45673	0.00026642	-0.25478	-0.00014862	0.20195	0.0001178	583.3216937031025	42.167	0.57296	42.167	41.81	42.383	0					24	10	3	0	0	0	0.060226	1	15867	15867		101.54	74.66	1	76407000			28851	3846	18339	18434	27729	27729					0.053414072599935025
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S1	1	389.2168273925781	3	389.216991	1164.62914	-0.22798	-8.8734E-05	-0.15568	-6.0592E-05	-0.38366	-0.00014933	389.21695814242474	42.164	0.364	42.164	41.966	42.33	0					10	6	2	0	0	0	0.088136	1	15915	15915		76.416	60.267	1	14584000			28852	3846	18339	18434	27730	27730					0.053414072599935025
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S2	2	583.8234252929688	2	583.321848	1164.62914	0.49913	0.00029116	0.15461	9.019E-05	0.65375	0.00038135	583.3219189482588	42.093	0.622	42.025	41.705	42.327	-0.068195					35	11	4	0	0	0	0.03125	1	15880	15880		124.95	92.167	1	376570000			28853	3846	18339	18434	27731	27731					0.053414072599935025
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S2	2	389.21697998046875	3	389.216991	1164.62914	0.061982	2.4124E-05	0.10775	4.1937E-05	0.16973	6.6061E-05	389.21696012403277	42.101	0.46643	42.033	41.756	42.223	-0.068199					23	8	4	0	0	0	0.053324	1	15896	15896		84.738	67.689	1	114080000			28854	3846	18339	18434	27732	27732					0.053414072599935025
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S3	3	583.3216552734375	2	583.321848	1164.62914	0.50928	0.00029707	0.10539	6.1478E-05	0.61467	0.00035855	583.3217636621065	42.422	0.4693	42.118	41.832	42.301	-0.30352					19	8	3	0	0	0	0.18064	1	15791	15791		77.049	53.259	1	18650000			28855	3846	18339	18434	27733	27733					0.053414072599935025
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S3	3	389.2168884277344	3	389.216991	1164.62914	0.0079537	3.0957E-06	-0.28688	-0.00011166	-0.27893	-0.00010856	389.2167804590119	42.391	0.3132	42.087	41.935	42.249	-0.30352					9	5	2	0	0	0	0.38175	1	15809	15809		43.477	33.713	1	4772600			28856	3846	18339	18434	27734	27734					0.053414072599935025
RVDPAKGLFY	10	Unmodified	_RVDPAKGLFY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S4	4	583.3223266601562	2	583.321848	1164.62914	0.3031	0.00017681	0.44727	0.0002609	0.75037	0.00043771	583.3220878088323	42.512	0.31118	42.137	41.942	42.254	-0.37565					9	5	3	0	0	0	0.45204	1	15653	15653		43.982	30.076	1	2795400			28857	3846	18339	18434	27735	27735					0.053414072599935025
RVDPIGPLSY	10	Unmodified	_RVDPIGPLSY_					0	0	0		DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant;DMXL2|p.M1691*|1|0.08|ENSG00000104093|chr15:51488100-51488100|T/-|frameshift_variant;DMXL2|p.F1695Sfs*15|3|0.27|ENSG00000104093|chr15:51488087-51488087|A/-|frameshift_variant;DMXL2|p.F2385Lfs*5|1|0.29|ENSG00000104093|chr15:51474399-51474399|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant	DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	558.8055419921875	2	558.806031	1115.59751	0.43732	0.00024437	-0.12294	-6.87E-05	0.31437	0.00017567	558.8058470576215	45.294	0.25911	45.294	45.192	45.451	0					8	4	2	0	0	0	0.01091	1	17177	17177		143.91	98.21	1	13854000			28858	695	18340	18435	27736	27736					0.04433414506047484
RVDPIGPLSY	10	Unmodified	_RVDPIGPLSY_					0	0	0		DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant;DMXL2|p.M1691*|1|0.08|ENSG00000104093|chr15:51488100-51488100|T/-|frameshift_variant;DMXL2|p.F1695Sfs*15|3|0.27|ENSG00000104093|chr15:51488087-51488087|A/-|frameshift_variant;DMXL2|p.F2385Lfs*5|1|0.29|ENSG00000104093|chr15:51474399-51474399|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;DMXL2|p.S2492Qfs*21|1|0.29|ENSG00000104093|chr15:51466227-51466227|A/-|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant	DMXL2|p.C1323Vfs*5|1|0.39|ENSG00000104093|chr15:51499257-51499257|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	559.3085327148438	2	558.806031	1115.59751	0.38033	0.00021253	-0.084547	-4.7245E-05	0.29579	0.00016529	558.8059156583658	45.37	0.46624	45.277	44.996	45.462	-0.092472					21	8	3	0	0	0	0.0095435	1	17224	17224		151.48	91.406	1	66585000			28859	695	18340	18435	27737	27737					0.04433414506047484
RVDPNGFFLY	10	Unmodified	_RVDPNGFFLY_					0	0	0		ENSG00000149782|ENST00000279230|PLCB3;PLCB3|p.R918Afs*95|5|0.32|ENSG00000149782|chr11:64265045-64265045|C/-|frameshift_variant	ENSG00000149782|ENST00000279230|PLCB3	ENSG00000149782|ENST00000279230|PLCB3	MULTI-MSMS	HCT116MG_D190212_S2	2	614.3118286132812	2	614.31148	1226.60841	0.39853	0.00024482	0.3668	0.00022533	0.76533	0.00047015	614.3115821604126	55.273	0.20311	55.085	54.968	55.171	-0.18797					7	3	3	0	0	0	0.15126	1	21316	21316		63.961	31.655	1	54800000			28860	4072	18341	18436	27738	27738					0.004168168803289518
RVDPNGSRY	9	Unmodified	_RVDPNGSRY_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S1	1	532.2677612304688	2	532.267604	1062.52066	0.46213	0.00024598	-0.021007	-1.1181E-05	0.44112	0.0002348	532.267552975758	17.854	0.417	17.854	17.724	18.141	0					20	7	4	0	0	0	0.0034454	1	6107	6107		176.43	134.33	1	64377000			28861	4969	18342	18437	27739	27739					-0.008103839904151755
RVDPNGSRY	9	Unmodified	_RVDPNGSRY_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7691040039062	2	532.267604	1062.52066	0.028423	1.5128E-05	0.5422	0.0002886	0.57062	0.00030372	532.267786230447	18.499	0.7298	18.136	17.851	18.581	-0.36325					40	13	6	0	0	0	0.0034454	3	6355	6353;6355;6363		176.43	134.33	1	317920000			28862	4969	18342	18437	27740;27741;27742	27741					-0.008103839904151755
RVDPNGSRY	9	Unmodified	_RVDPNGSRY_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7680053710938	2	532.267604	1062.52066	0.19312	0.00010279	-0.089126	-4.7439E-05	0.10399	5.5353E-05	532.2676365853006	17.345	0.78061	17.427	17.273	18.054	0.081358					30	14	3	0	0	0	0.026793	1	5824	5824		96.936	68.449	1	12567000			28863	4969	18342	18437	27743	27743					-0.008103839904151755
RVDPNGSRYLL	11	Unmodified	_RVDPNGSRYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S1	1	645.351806640625	2	645.351668	1288.68878	0.65933	0.0004255	-0.14411	-9.3003E-05	0.51522	0.0003325	645.3513505378547	37.781	0.31313	37.781	37.602	37.916	0					10	5	3	0	0	0	0.12547	1	14132	14132		84.738	46.123	1	15649000			28864	4969	18343	18438	27744	27744					0.05598678203386953
RVDPNGSRYLL	11	Unmodified	_RVDPNGSRYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	645.3518676757812	2	645.351668	1288.68878	0.41872	0.00027022	0.078138	5.0427E-05	0.49686	0.00032065	645.3517950557568	37.82	0.36056	37.727	37.599	37.96	-0.09301					15	6	3	0	0	0	0.036338	1	14193	14193		122.57	76.83	1	91035000			28865	4969	18343	18438	27745	27745					0.05598678203386953
RVDPNGSRYLL	11	Unmodified	_RVDPNGSRYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	430.5701599121094	3	430.570204	1288.68878	-0.18632	-8.0225E-05	-0.15761	-6.7862E-05	-0.34393	-0.00014809	430.5700559814302	37.802	0.25763	37.705	37.595	37.853	-0.096714					8	4	2	0	0	0	0.090869	1	14224	14224		70.524	51.38	1	18641000			28866	4969	18343	18438	27746	27746					0.05598678203386953
RVDPNGSRYLL	11	Unmodified	_RVDPNGSRYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MATCH	HCT116MG_D190212_S1	1		3	430.570204	1288.68878	-0.037561	-1.6173E-05	0.28808	0.00012404	0.25051	0.00010786	430.57003547331317	37.785	0.26108	37.785	37.602	37.863	0	0.039914	0.00034746	NaN	70.524	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5916700			28867	4969	18343	18438							0.05598678203386953
RVDPNGSRYLL	11	Unmodified	_RVDPNGSRYLL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	645.351668	1288.68878	0.66292	0.00042782	-0.48789	-0.00031486	0.17503	0.00011296	645.3512731558817	38.072	0.1731	37.771	37.66	37.833	-0.30137	0.011048	-0.0005063	NaN	122.57	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3260700			28868	4969	18343	18438							0.05598678203386953
RVEEAIHPV	9	Unmodified	_RVEEAIHPV_					0	0	0		ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2908325195312	2	525.290548	1048.56654	0.46576	0.00024466	0.055293	2.9045E-05	0.52106	0.00027371	525.2904506811184	27.038	0.26431	26.686	26.554	26.818	-0.35254					10	4	3	0	0	0	0.066823	1	9833	9833		66.457	30.33	1	17312000			28869	7393	18344	18439	27747	27747					0.044202611917853574
RVEEAIHPV	9	Unmodified	_RVEEAIHPV_					0	0	0		ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	525.290548	1048.56654	0.44484	0.00023367	-0.19274	-0.00010124	0.25211	0.00013243	525.7917335462525	26.816	0.20815	26.666	26.515	26.723	-0.14924	0.0054254	-0.00026684	NaN	66.457	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2264000			28870	7393	18344	18439							0.044202611917853574
RVGAGCPL	8	Unmodified	_RVGAGCPL_					0	0	0			REV__ENST00000585931.5_1_18:13612043-13645232:+|nuORF	REV__ENST00000585931.5_1_18:13612043-13645232:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	386.7102355957031	2	386.710348	771.406143	0.017787	6.8784E-06	0.56584	0.00021882	0.58363	0.0002257	386.710295530588	26.796	1.3514	26.444	26.189	27.54	-0.35254					58	25	4	0	0	0	0.50777	1	9681	9681		40.449	0	1	68775000	+		28871	16650	18345	18440	27748	27748					0.011296349939129868
RVGYLGAT	8	Unmodified	_RVGYLGAT_					0	0	0		AP1G2|p.M91T|1|0.32|ENSG00000213983|chr14:23566619-23566619|A/G|missense_variant	AP1G2|p.M91T|1|0.32|ENSG00000213983|chr14:23566619-23566619|A/G|missense_variant	AP1G2|p.M91T|1|0.32|ENSG00000213983|chr14:23566619-23566619|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	836.4635620117188	1	836.462478	835.455202	0.67029	0.00056067	0.1021	8.5402E-05	0.77239	0.00064607	836.4625027166855	21.682	0.20761	21.297	21.167	21.375	-0.38503					5	3	2	0	0	0	0.53394	1	7659	7659		38.151	5.8457	1	9011300			28872	148	18346	18441	27749	27749					0.030892465545093728
RVHGCGGA	8	Unmodified	_RVHGCGGA_					0	0	0		ENST00000252050.8_2_6:43190351-43192035:+|nuORF	ENST00000252050.8_2_6:43190351-43192035:+|nuORF	ENST00000252050.8_2_6:43190351-43192035:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	756.3568725585938	1	756.356967	755.349691	1.1524	0.00087161	-0.46424	-0.00035113	0.68814	0.00052048	756.3564198705462	40.791	0.20667	40.721	40.622	40.829	-0.069626					6	3	2	0	0	0	0.8506	1	15422	15422		5.2307	2.3415	1	12530000			28873	6801	18347	18442	27750	27750					-0.03776992842733762
RVHGPLSLLA	10	Unmodified	_RVHGPLSLLA_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	MSMS	HCT116MG_D190212_S1	1	355.06982421875	3	354.885464	1061.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1799	1	9.1799	8.6799	9.6799	0								0	0	0	0.97116	1	2779	2779		0	0	1				28874	6462	18348	18443	27751	27751					0.10621130842491766
RVHLVVSRQ	9	Unmodified	_RVHLVVSRQ_					0	0	0		nc|ENSG00000072201|Q8TBB1-2|LNX1;ENSG00000072201|ENST00000263925|LNX1	nc|ENSG00000072201|Q8TBB1-2|LNX1	nc|ENSG00000072201|Q8TBB1-2|LNX1	MSMS	HCT116MG_D190212_S2	2	547.3306884765625	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.571	1	55.385	54.885	55.885	-0.18565								0	0	0	0.76739	1	21424	21424		10.074	2.7847	1				28875	1265	18349	18444	27752	27752					0.10899051448268438
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1;RANGAP1|p.M215I|1|0.08|ENSG00000100401|chr22:41258077-41258077|C/T|missense_variant	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2914733886719	2	508.292756	1014.57096	0.61733	0.00031378	-0.30589	-0.00015548	0.31144	0.0001583	508.2924790220361	39.226	0.30957	39.148	38.968	39.277	-0.077835					14	5	4	0	0	0	0.0057285	1	14757	14757		131.27	5.643	1	252970000			28876	1705	18350	18445	27753	27753					0.06425725614724342
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1;RANGAP1|p.M215I|1|0.08|ENSG00000100401|chr22:41258077-41258077|C/T|missense_variant	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1015.5780639648438	1	1015.57824	1014.57096	0.95615	0.00097105	0.38341	0.00038938	1.3396	0.0013604	1015.5779651798862	39.226	0.30957	39.148	38.968	39.277	-0.077835					9	5	2	0	0	0	0.0048275	1	14781	14781		139.14	27.851	1	41099000			28877	1705	18350	18445	27754	27754					0.06425725614724342
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1;RANGAP1|p.M215I|1|0.08|ENSG00000100401|chr22:41258077-41258077|C/T|missense_variant	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	508.292756	1014.57096	0.15207	7.7296E-05	-0.77599	-0.00039443	-0.62392	-0.00031714	508.29225501627405	39.269	0.28625	39.269	39.111	39.398	0	0.073428	-9.0244E-05	NaN	131.27	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74338000			28878	1705	18350	18445							0.06425725614724342
RVKAGHKH	8	Unmodified	_RVKAGHKH_					0	0	0		nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	MULTI-SECPEP	HCT116MG_D190212_S4	4	467.2386474609375	2	466.780485	931.546417	-0.032832	-1.5325E-05	0.8205	0.00038299	0.78767	0.00036767	466.78056425926275	45.03	0.37296	44.657	44.51	44.883	-0.37325					13	9	2	0	0	0	0.33409	1	16681	16681		2.5775	2.5775	1	2945600			28879	9544	18351	18446	27755	27755					0.07790555042515734
RVKDFATVY	9	Unmodified	_RVKDFATVY_					0	0	0		CON__P15497	CON__P15497	CON__P15497	MULTI-MSMS	HCT116MG_D190212_S1	1	549.8010864257812	2	549.800749	1097.58694	0.6205	0.00034115	-0.0464	-2.5511E-05	0.5741	0.00031564	549.8006898448839	33.374	0.41447	33.374	33.193	33.607	0					23	7	5	0	0	0	0.16143	1	12349	12349		57.722	27.085	1	202120000		+	28880	562	18352	18447	27756	27756					0.04205431851596586
RVKDFATVY	9	Unmodified	_RVKDFATVY_					0	0	0		CON__P15497	CON__P15497	CON__P15497	MULTI-MSMS	HCT116MG_D190212_S1	1	367.2039489746094	3	366.869591	1097.58694	0.0088875	3.2605E-06	0.18534	6.7994E-05	0.19422	7.1255E-05	366.869561483778	33.404	0.25914	33.404	33.244	33.504	0					12	4	3	0	0	0	0.17423	1	12372	12372		43.982	28.135	1	21459000		+	28881	562	18352	18447	27757	27757					0.04205431851596586
RVKDFATVY	9	Unmodified	_RVKDFATVY_					0	0	0		CON__P15497	CON__P15497	CON__P15497	MULTI-MSMS	HCT116MG_D190212_S2	2	549.801025390625	2	549.800749	1097.58694	0.65687	0.00036115	0.13345	7.3373E-05	0.79033	0.00043452	549.8008176288442	33.647	0.46582	33.455	33.225	33.691	-0.19296					26	8	5	0	0	0	0.085458	2	12473	12459;12473		75.761	45.124	1	1067199999.9999999		+	28882	562	18352	18447	27758;27759	27759					0.04205431851596586
RVKDFATVY	9	Unmodified	_RVKDFATVY_					0	0	0		CON__P15497	CON__P15497	CON__P15497	MULTI-MSMS	HCT116MG_D190212_S2	2	366.8696594238281	3	366.869591	1097.58694	0.036067	1.3232E-05	0.20708	7.5972E-05	0.24315	8.9203E-05	366.869540542553	33.628	0.415	33.435	33.276	33.691	-0.19296					12	7	2	0	0	0	0.17423	1	12494	12494		43.982	27.416	1	119850000		+	28883	562	18352	18447	27760	27760					0.04205431851596586
RVKDFATVY	9	Unmodified	_RVKDFATVY_					0	0	0		CON__P15497	CON__P15497	CON__P15497	MULTI-MSMS	HCT116MG_D190212_S2	2	1098.5947265625	1	1098.59422	1097.58694	0.94446	0.0010376	-0.05777	-6.3466E-05	0.88669	0.00097411	1098.593543624443	33.604	0.20773	33.411	33.327	33.534	-0.19296					8	3	3	0	0	0	0.040372	1	12500	12500		96.367	50.667	1	36387000		+	28884	562	18352	18447	27761	27761					0.04205431851596586
RVKDFATVY	9	Unmodified	_RVKDFATVY_					0	0	0		CON__P15497	CON__P15497	CON__P15497	MULTI-MSMS	HCT116MG_D190212_S3	3	549.8011474609375	2	549.800749	1097.58694	0.438	0.00024081	0.12658	6.9595E-05	0.56458	0.0003104	549.8007877105233	33.825	0.46772	33.535	33.356	33.823	-0.29013					21	8	4	0	0	0	0.12465	1	12411	12411		66.457	35.82	1	99416000		+	28885	562	18352	18447	27762	27762					0.04205431851596586
RVKDFATVY	9	Unmodified	_RVKDFATVY_					0	0	0		CON__P15497	CON__P15497	CON__P15497	MULTI-MSMS	HCT116MG_D190212_S3	3	366.8693542480469	3	366.869591	1097.58694	-0.068739	-2.5218E-05	-0.095351	-3.4981E-05	-0.16409	-6.0199E-05	366.8694894530071	33.821	0.36368	33.531	33.408	33.771	-0.29013					11	6	3	0	0	0	0.23993	1	12432	12432		37.075	19.632	1	13118000		+	28886	562	18352	18447	27763	27763					0.04205431851596586
RVKDFATVY	9	Unmodified	_RVKDFATVY_					0	0	0		CON__P15497	CON__P15497	CON__P15497	MULTI-MSMS	HCT116MG_D190212_S4	4	549.80126953125	2	549.800749	1097.58694	0.70147	0.00038567	0.80449	0.00044231	1.506	0.00082798	549.8006530625413	33.908	0.72937	33.523	32.996	33.725	-0.38426					18	9	4	0	0	0	0.27966	1	12373	12373		41.956	21.502	1	18477000		+	28887	562	18352	18447	27764	27764					0.04205431851596586
RVKDFATVY	9	Unmodified	_RVKDFATVY_					0	0	0		CON__P15497	CON__P15497	CON__P15497	MULTI-MATCH	HCT116MG_D190212_S4	4		3	366.869591	1097.58694	0.1225	4.4942E-05	-0.067797	-2.4873E-05	0.054705	2.007E-05	366.8693475748669	33.98	0.20792	33.595	33.413	33.621	-0.38426	0.10398	-0.00021785	NaN	43.982	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2271300		+	28888	562	18352	18447							0.04205431851596586
RVKKLTCRVK	10	Unmodified	_RVKKLTCRVK_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A;KIF13A|p.V1116Sfs*4|2|0.23|ENSG00000137177|chr6:17787791-17787792|-/T|frameshift_variant;KIF13A|p.V1116Sfs*23|1|0.39|ENSG00000137177|chr6:17787792-17787792|T/-|frameshift_variant	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MSMS	HCT116MG_D190212_S2	2	411.09368896484375	3	410.93242	1229.77543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.393	1	12.099	11.599	12.599	-0.29424								0	0	0	0.97116	1	4049	4049		0	0	1				28889	3466	18353	18448	27765	27765					0.16973386224208298
RVKLIIKTQ	9	Unmodified	_RVKLIIKTQ_					0	0	0			REV__LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant	REV__LAMA3|p.T2580Hfs*68|1|0.55|ENSG00000053747|chr18:23915376-23915376|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	549.8715209960938	2	549.871508	1097.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.259	1	60.105	59.605	60.605	-0.15441								0	0	0	0.7701	1	23318	23318		0.52476	0	1		+		28890	16968	18354	18449	27766	27766					0.18350849944772563
RVKLVLGRLLL	11	Unmodified	_RVKLVLGRLLL_					0	0	0		sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1;sp|P16730|UL87_HCMVAProteinUL87OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL87PE=3SV=1	sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	427.2015075683594	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.662	1	58.496	57.996	58.996	-0.1653								0	0	0	0.96111	1	22677	22677		0.50596	0.41111	1				28891	18208	18355	18450	27767	27767					0.25807349204001184
RVLAIQARKRR	11	Unmodified	_RVLAIQARKRR_					0	0	0		ENST00000482862.1_1_7:104909300-105029811:-|nuORF	ENST00000482862.1_1_7:104909300-105029811:-|nuORF	ENST00000482862.1_1_7:104909300-105029811:-|nuORF	MSMS	HCT116MG_D190212_S2	2	683.9468383789062	2	683.946936	1365.87932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.51	1	49.348	48.848	49.848	-0.16199								0	0	0	0.95686	1	18951	18951		2.7352	0	1				28892	8266	18356	18451	27768	27768					0.21101429376085434
RVLKLVLK	8	Unmodified	_RVLKLVLK_					0	0	0		nc|ENSG00000205464|Q52LC2|ATP6AP1L	nc|ENSG00000205464|Q52LC2|ATP6AP1L	nc|ENSG00000205464|Q52LC2|ATP6AP1L	MSMS	HCT116MG_D190212_S1	1	484.8522644042969	2	484.852587	967.690622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.186	1	14.186	13.686	14.686	0								0	0	0	0.8837	1	4629	4629		0	0	1				28893	9613	18357	18452	27769	27769					0.2054838374991732
RVLRATSP	8	Unmodified	_RVLRATSP_					0	0	0			REV__ENST00000316097.12_1_19:1924290-1924809:+|nuORF	REV__ENST00000316097.12_1_19:1924290-1924809:+|nuORF	MSMS	HCT116MG_D190212_S2	2	450.2752685546875	2	450.274701	898.534849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.509	1	61.367	60.867	61.867	-0.14227								0	0	0	0.8837	1	23825	23825		2.3027	1.5091	1		+		28894	14860	18358	18453	27770	27770					0.08152313228504227
RVLRWRRRIVL	11	Unmodified	_RVLRWRRRIVL_					0	0	0			REV__sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	REV__sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	MSMS	HCT116MG_D190212_S4	4	762.3344116210938	2	761.999503	1521.98445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.853	1	53.524	53.024	54.024	-0.32923								0	0	0	0.96208	1	20119	20119		0	0	1		+		28895	17556	18359	18454	27771	27771					0.24433970572522412
RVLWRRRQRQR	11	Unmodified	_RVLWRRRQRQR_					0	0	0		ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	537.3207397460938	3	537.329335	1608.96618	0.54698	0.00029391	0.10118	5.4369E-05	0.64817	0.00034828	537.6635171272292	55.874	0.20596	55.689	55.587	55.793	-0.18565					5	3	2	0	0	0	0.74191	1	21569	21569		0.08335	0.010087	1	4666200			28896	6883	18360	18455	27772	27772					0.18605228650517347
RVMEYINRL	9	Unmodified	_RVMEYINRL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.A1374*|1|0.05|ENSG00000141367|chr17:59683464-59683465|-/TA|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	HCT116MG_D190212_S1	1	597.8280639648438	2	597.326608	1192.63866	0.33243	0.00019857	-0.41098	-0.00024549	-0.078555	-4.6923E-05	597.326590793031	39.262	0.28625	39.262	39.111	39.398	0					13	6	3	0	0	0	0.0035631	1	14729	14729		173.69	73.887	1	53397000			28897	3710	18361	18456	27773	27773					0.05004852273873439
RVPALLYLL	9	Unmodified	_RVPALLYLL_					0	0	0			REV__ENST00000388988.8_1_15:78799912-78805465:+|nuORF	REV__ENST00000388988.8_1_15:78799912-78805465:+|nuORF	MSMS	HCT116MG_D190212_S4	4	353.2299499511719	3	353.23046	1056.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.168	1	61.918	61.418	62.418	-0.24992								0	0	0	0.7701	1	23471	23471		0.23584	0	1		+		28898	15295	18362	18457	27774	27774					0.14348373650409485
RVPCLIPP	8	Unmodified	_RVPCLIPP_					0	0	0		ENST00000583167.5_1_17:45892556-45892844:-|nuORF	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	447.7646179199219	2	447.765123	893.515694	-0.050328	-2.2535E-05	-0.42711	-0.00019124	-0.47744	-0.00021378	447.76496161904004	48.777	0.30798	48.777	48.614	48.922	0					9	5	2	0	0	0	0.8506	1	18580	18580		5.2307	2.6532	1	25011000			28899	8965	18363	18458	27775	27775					0.06467640613254844
RVPCLIPP	8	Unmodified	_RVPCLIPP_					0	0	0		ENST00000583167.5_1_17:45892556-45892844:-|nuORF	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	447.765625	2	447.765123	893.515694	-0.014995	-6.7144E-06	0.88932	0.0003982	0.87432	0.00039149	447.7655078452743	49.787	0.52163	49.472	49.237	49.759	-0.31525					17	9	2	0	0	0	0.86564	1	18751	18751		2.5775	1.7838	1	10921000			28900	8965	18363	18458	27776	27776					0.06467640613254844
RVPCLIPP	8	Unmodified	_RVPCLIPP_					0	0	0		ENST00000583167.5_1_17:45892556-45892844:-|nuORF	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	447.76483154296875	2	447.765123	893.515694	0.1735	7.7689E-05	-0.79413	-0.00035559	-0.62063	-0.0002779	447.7647440134181	49.769	0.82676	49.407	49.067	49.894	-0.36213					36	18	3	0	0	0	0.86564	1	18449	18449		2.5775	1.7838	1	16861000			28901	8965	18363	18458	27777	27777					0.06467640613254844
RVPLARAL	8	Unmodified	_RVPLARAL_					0	0	0		ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	448.2957458496094	2	448.295436	894.57632	-0.020849	-9.3467E-06	0.58058	0.00026027	0.55973	0.00025093	448.2956672808793	58.403	0.3542	58.403	58.261	58.615	0					15	6	3	0	0	0	0.87635	1	22528	22528		0.69038	0	1	33683000			28902	8095	18364	18459	27778	27778					0.1248149398784335
RVPLARAL	8	Unmodified	_RVPLARAL_					0	0	0		ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	448.295436	894.57632	0.21598	9.6822E-05	0.027595	1.2371E-05	0.24357	0.00010919	448.29532860295717	58.464	0.20293	58.294	58.196	58.398	-0.1703	-0.05467	-0.00042209	NaN	0.69038	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11953000			28903	8095	18364	18459							0.1248149398784335
RVPPPPHGA	9	Unmodified	_RVPPPPHGA_					0	0	0		ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	464.2614440917969	2	464.261594	926.508634	0.29202	0.00013558	-0.45206	-0.00020987	-0.16004	-7.4299E-05	464.2614043604645	17.906	0.2607	17.906	17.776	18.037	0					10	4	3	0	0	0	0.011506	1	6137	6137		109.63	27.739	1	10026000			28904	2286	18365	18460	27779	27779					0.04244044057031715
RVPPPPHGA	9	Unmodified	_RVPPPPHGA_					0	0	0		ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	464.2616271972656	2	464.261594	926.508634	-0.26915	-0.00012496	0.40985	0.00019028	0.14069	6.5317E-05	464.26167207505847	18.554	0.46859	18.191	18.008	18.477	-0.36325					17	8	3	0	0	0	0.0050053	1	6395	6395		137.59	33.837	1	35165000			28905	2286	18365	18460	27780	27780					0.04244044057031715
RVPPPPHGA	9	Unmodified	_RVPPPPHGA_					0	0	0		ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	464.261474609375	2	464.261594	926.508634	0.039067	1.8138E-05	-0.046888	-2.1768E-05	-0.0078208	-3.6309E-06	464.26159324819537	17.413	0.36419	17.494	17.325	17.69	0.081358					9	6	2	0	0	0	0.071351	1	5865	5865		64.236	16.488	1	5326600			28906	2286	18365	18460	27781	27781					0.04244044057031715
RVPPPPHGA	9	Unmodified	_RVPPPPHGA_					0	0	0		ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	464.261594	926.508634	-0.23517	-0.00010918	0.31013	0.00014398	0.074964	3.4803E-05	464.26189016320404	17.795	0.15582	17.62	17.532	17.688	-0.17501	0.062684	0.00029688	NaN	64.236	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	891120			28907	2286	18365	18460							0.04244044057031715
RVPPPPPIA	9	Unmodified	_RVPPPPPIA_					0	0	0		HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000457130.2_1_X:143922603-143922738:+|nuORF;ENST00000560385.2_1_15:79528799-79529129:+|nuORF;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	472.2895812988281	2	472.28982	942.565087	0.39032	0.00018434	-0.16953	-8.0066E-05	0.22079	0.00010428	472.28964410809476	31.005	0.52071	31.005	30.763	31.284	0					13	9	2	0	0	0	0.2853	1	11426	11426		32.305	3.8186	1	2731500			28908	1576	18366	18461	27782	27782					0.09150671893689832
RVPPPPPIA	9	Unmodified	_RVPPPPPIA_					0	0	0		HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000457130.2_1_X:143922603-143922738:+|nuORF;ENST00000560385.2_1_15:79528799-79529129:+|nuORF;ENST00000571636.1_1_16:11336795-11337332:+|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.28973388671875	2	472.28982	942.565087	0.44336	0.0002094	-0.25642	-0.0001211	0.18695	8.8293E-05	472.2896600455798	31.402	0.67255	31.154	30.838	31.51	-0.24883					24	12	3	0	0	0	0.050578	1	11560	11560		74.423	20.847	1	12438000			28909	1576	18366	18461	27783	27783					0.09150671893689832
RVPPPPQSV	9	Unmodified	_RVPPPPQSV_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MULTI-MSMS	HCT116MG_D190212_S1	1	488.78253173828125	2	488.782359	975.550165	0.16067	7.8535E-05	0.23431	0.00011453	0.39498	0.00019306	488.7824634746708	25.257	0.46946	25.257	25.04	25.509	0					11	8	2	0	0	0	0.0050238	1	9071	9071		137.42	44.258	1	5016300			28910	4459	18367	18462	27784	27784					0.06141180025713311
RVPPPPQSV	9	Unmodified	_RVPPPPQSV_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MULTI-MSMS	HCT116MG_D190212_S2	2	488.7826843261719	2	488.782359	975.550165	0.18887	9.2316E-05	0.090857	4.4409E-05	0.27973	0.00013673	488.7822715363938	25.614	1.0382	25.245	25.03	26.068	-0.36914					25	19	2	0	0	0	0.0040527	1	9237	9237		149.91	46.494	1	17522000			28911	4459	18367	18462	27785	27785					0.06141180025713311
RVPQRWWQE	9	Unmodified	_RVPQRWWQE_					0	0	0		ENST00000545260.5_2_10:34398874-34399204:-|nuORF	ENST00000545260.5_2_10:34398874-34399204:-|nuORF	ENST00000545260.5_2_10:34398874-34399204:-|nuORF	MSMS	HCT116MG_D190212_S1	1	428.8911437988281	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.783	1	13.783	13.283	14.283	0								0	0	0	0.77018	1	4486	4486		0.26902	0.1097	1				28912	8715	18368	18463	27786	27786					0.021858460973135152
RVQGFQVEY	9	Unmodified	_RVQGFQVEY_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	HCT116MG_D190212_S1	1	563.28759765625	2	563.288005	1124.56146	0.10615	5.9794E-05	-0.1343	-7.5648E-05	-0.028146	-1.5854E-05	563.2879329461737	40.583	0.25425	40.583	40.435	40.69	0					6	4	2	0	0	0	0.12994	1	15278	15278		52.268	14.294	1	10298000			28913	2836	18369	18464	27787	27787					0.004159573291872221
RVRIYLKKKKK	11	Unmodified	_RVRIYLKKKKK_					0	0	0		AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|4|1|sense	AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|4|1|sense	AluSx_dup105968|chr19:17814932-17815230:+|4.066636172732648|0.3124682729523712|3.7|482.0|4|1|sense	MSMS	HCT116MG_D190212_S2	2	730.5007934570312	2	730.501013	1458.98747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.492	1	39.414	38.914	39.914	-0.077835								0	0	0	0.96208	1	14865	14865		0	0	1				28914	110	18370	18465	27788	27788					0.27633800906664874
RVRQRRHARLP	11	Unmodified	_RVRQRRHARLP_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	482.2992858886719	3	482.299265	1443.87596	0.18241	8.7978E-05	0.16371	7.8955E-05	0.34612	0.00016693	482.2992143380312	56.54	0.568	56.54	56.273	56.841	0					26	10	4	0	0	0	0.74191	1	21821	21821		0.08335	0	1	54947000	+		28915	14889	18371	18466	27789	27789					0.17178179322127107
RVRRIHVRRHI	11	Unmodified	_RVRRIHVRRHI_					0	0	0		ENST00000566842.5_1_16:29918195-29922616:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	749.4777221679688	2	749.476726	1496.9389	0.70958	0.00053181	0.12537	9.3963E-05	0.83495	0.00062578	749.4767781004107	60.957	2.6878	60.957	60.129	62.817	0					161	51	4	0	0	0	0.74191	1	24028	24028		0	0	1	89189000			28916	5353	18372	18467	27790	27790					0.2103074511014711
RVRRKHSI	8	Unmodified	_RVRRKHSI_					0	0	0			REV__nc|ENSG00000155393|Q7Z4Q2-3|HEATR3	REV__nc|ENSG00000155393|Q7Z4Q2-3|HEATR3	MULTI-MSMS	HCT116MG_D190212_S2	2	526.363037109375	2	526.333416	1050.65228	0.11798	6.2096E-05	-0.77065	-0.00040562	-0.65267	-0.00034352	526.3328460954483	49.854	0.97084	49.69	49.228	50.199	-0.16369					29	18	2	0	0	0	0.84759	1	19267	19267		5.7604	5.7604	1	42200000	+		28917	12700	18373	18468	27791	27791					0.1289789088798443
RVRRRIVKFTT	11	Unmodified	_RVRRRIVKFTT_					0	0	0			REV__ENST00000596882.1_1_19:41816793-41816904:+|nuORF	REV__ENST00000596882.1_1_19:41816793-41816904:+|nuORF	MSMS	HCT116MG_D190212_S1	1	477.97100830078125	3	477.972155	1430.89463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.28	1	11.28	10.78	11.78	0								0	0	0	0.9619	1	3536	3536		0.094841	0.094841	1		+		28918	16724	18374	18469	27792	27792					0.1964229617331057
RVRSHRRAL	9	Unmodified	_RVRSHRRAL_					0	0	0			REV__nc|ENSG00000135362|Q6MZQ0-3|PRR5L	REV__nc|ENSG00000135362|Q6MZQ0-3|PRR5L	MSMS	HCT116MG_D190212_S2	2	383.9046630859375	3	384.239123	1149.69554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.887	1	43.809	43.309	44.309	-0.078373								0	0	0	0.76718	1	16653	16653		10.8	2.644	1		+		28919	12087	18375	18470	27793	27793					0.12668080665275738
RVRSRPPGCQE	11	Unmodified	_RVRSRPPGCQE_					0	0	0		ENST00000424684.2_1_1:149287578-149287776:+|nuORF	ENST00000424684.2_1_1:149287578-149287776:+|nuORF	ENST00000424684.2_1_1:149287578-149287776:+|nuORF	MSMS	HCT116MG_D190212_S2	2	429.088623046875	3	428.891172	1283.65169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6419	1	5.4938	4.9938	5.9938	-0.14816								0	0	0	0.96208	1	1787	1787		0	0	1				28920	7807	18376	18471	27794	27794					0.021206833859878316
RVRSRPPGCQE	11	Unmodified	_RVRSRPPGCQE_					0	0	0		ENST00000424684.2_1_1:149287578-149287776:+|nuORF	ENST00000424684.2_1_1:149287578-149287776:+|nuORF	ENST00000424684.2_1_1:149287578-149287776:+|nuORF	MSMS	HCT116MG_D190212_S2	2	428.89111328125	3	428.891172	1283.65169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1266	1	5.952	5.452	6.452	-0.17458								0	0	0	0.96208	1	1932	1932		0	0	1				28921	7807	18376	18471	27795	27795					0.021206833859878316
RVRSRPPGCQE	11	Unmodified	_RVRSRPPGCQE_					0	0	0		ENST00000424684.2_1_1:149287578-149287776:+|nuORF	ENST00000424684.2_1_1:149287578-149287776:+|nuORF	ENST00000424684.2_1_1:149287578-149287776:+|nuORF	MSMS	HCT116MG_D190212_S2	2	428.89111328125	3	428.891172	1283.65169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.6476	1	6.4504	5.9504	6.9504	-0.19725								0	0	0	0.96208	1	2092	2092		0	0	1				28922	7807	18376	18471	27796	27796					0.021206833859878316
RVRSRPPGCQE	11	Unmodified	_RVRSRPPGCQE_					0	0	0		ENST00000424684.2_1_1:149287578-149287776:+|nuORF	ENST00000424684.2_1_1:149287578-149287776:+|nuORF	ENST00000424684.2_1_1:149287578-149287776:+|nuORF	MSMS	HCT116MG_D190212_S2	2	429.08868408203125	3	428.891172	1283.65169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1617	1	6.9638	6.4638	7.4638	-0.19798								0	0	0	0.96208	1	2246	2246		0	0	1				28923	7807	18376	18471	27797	27797					0.021206833859878316
RVRVRRLIC	9	Unmodified	_RVRVRRLIC_					0	0	0		ENST00000475176.1_1_7:156752694-156752904:+|nuORF	ENST00000475176.1_1_7:156752694-156752904:+|nuORF	ENST00000475176.1_1_7:156752694-156752904:+|nuORF	MSMS	HCT116MG_D190212_S1	1	391.162841796875	3	390.916993	1169.72915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.756	1	10.756	10.256	11.256	0								0	0	0	0.77025	1	3325	3325		0	0	1				28924	8199	18377	18472	27798	27798					0.15107366112829368
RVRVRRLIC	9	Unmodified	_RVRVRRLIC_					0	0	0		ENST00000475176.1_1_7:156752694-156752904:+|nuORF	ENST00000475176.1_1_7:156752694-156752904:+|nuORF	ENST00000475176.1_1_7:156752694-156752904:+|nuORF	MSMS	HCT116MG_D190212_S1	1	391.28424072265625	3	390.916993	1169.72915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.825	1	10.825	10.325	11.325	0								0	0	0	0.77025	1	3352	3352		0	0	1				28925	8199	18377	18472	27799	27799					0.15107366112829368
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	MULTI-MSMS	HCT116MG_D190212_S1	1	532.7904663085938	2	532.790381	1063.56621	0.20715	0.00011037	0.35802	0.00019075	0.56517	0.00030112	532.7905053056963	49.986	0.25735	49.986	49.853	50.111	0					11	4	3	0	0	0	0.085458	1	19081	19081		75.761	20.987	1	77493000			28926	2233	18378	18473	27800	27800					0.036968414719467546
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	nc|ENSG00000110075|Q5H9R7-2|PPP6R3	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7908935546875	2	532.790381	1063.56621	0.29343	0.00015633	0.35243	0.00018777	0.64586	0.00034411	532.7904757920516	50.147	0.46186	49.98	49.735	50.197	-0.1662					18	8	4	0	0	0	0.085458	1	19208	19208		75.761	19.584	1	174250000			28927	2233	18378	18473	27801	27801					0.036968414719467546
RVSFSGVP	8	Unmodified	_RVSFSGVP_					0	0	0		nc|ENSG00000185988|Q496M5-2|PLK5	nc|ENSG00000185988|Q496M5-2|PLK5	nc|ENSG00000185988|Q496M5-2|PLK5	MULTI-MSMS	HCT116MG_D190212_S1	1	424.73443603515625	2	424.734877	847.455202	-0.087813	-3.7297E-05	-0.94464	-0.00040122	-1.0324	-0.00043852	424.73429637412414	43.619	0.25805	43.619	43.42	43.678	0					7	4	2	0	0	0	0.86564	1	16484	16484		2.5775	0	1	15272000			28928	9581	18379	18474	27802	27802					0.025372465545387968
RVSSGHRV	8	Unmodified	_RVSSGHRV_					0	0	0		ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0;KRT84|p.A99Gfs*2|1|0.4|ENSG00000161849|chr12:52385290-52385291|-/C|frameshift_variant;KRT84|p.V131Nfs*28|1|0.05|ENSG00000161849|chr12:52385196-52385197|-/AGGAATATTA|frameshift_variant	ENSG00000161849|ENST00000257951|KRT84	ENSG00000161849|ENST00000257951|KRT84	MULTI-MSMS	HCT116MG_D190212_S1	1	449.2543029785156	2	449.2543	896.494047	0.018671	8.3882E-06	0.45757	0.00020556	0.47624	0.00021395	449.25430848496507	43.291	0.36465	43.291	43.003	43.368	0					10	6	2	0	0	0	0.85789	1	16367	16367		3.9444	0	1	18556000		+	28929	581	18380	18475	27803	27803					0.04165971908912525
RVSWYQQP	8	Unmodified	_RVSWYQQP_					0	0	0		nc|ENSG00000211664|A0A075B6J9|IGLV2-18	nc|ENSG00000211664|A0A075B6J9|IGLV2-18	nc|ENSG00000211664|A0A075B6J9|IGLV2-18	MSMS	HCT116MG_D190212_S2	2	355.0696716308594	3	355.182169	1062.52468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.517	1	18.154	17.654	18.654	-0.36325								0	0	0	0.8837	1	6368	6368		3.9444	0.3479	1				28930	9620	18381	18476	27804	27804					-0.004082944967194635
RVTGRARVRLG	11	Unmodified	_RVTGRARVRLG_					0	0	0			REV__ENST00000345057.8_1_16:67188417-67189138:-|nuORF	REV__ENST00000345057.8_1_16:67188417-67189138:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	620.8878173828125	2	620.889087	1239.76362	0.50249	0.00031199	-1.1102	-0.00068929	-0.60768	-0.0003773	620.8881516194039	42.992	0.62377	42.992	42.588	43.212	0					15	11	2	0	0	0	0.74191	1	16277	16277		4.1895	0.59301	1	7396300	+		28931	15007	18382	18477	27805	27805					0.15332905525247043
RVTQDGWLV	9	Unmodified	_RVTQDGWLV_					0	0	0		FAT2|p.P3479Q|1|0.15|ENSG00000086570|chr5:151525838-151525838|G/T|missense_variant	FAT2|p.P3479Q|1|0.15|ENSG00000086570|chr5:151525838-151525838|G/T|missense_variant	FAT2|p.P3479Q|1|0.15|ENSG00000086570|chr5:151525838-151525838|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	537.8190307617188	2	537.290548	1072.56654	0.46826	0.00025159	0.15876	8.5298E-05	0.62702	0.00033689	537.2902276429884	51.557	0.30864	51.374	51.218	51.527	-0.18368					9	5	3	0	0	0	0.18552	1	19818	19818		30.637	16.73	1	14009000			28932	9153	18383	18478	27806	27806					0.033162611917987306
RVVCRVLMG	9	Unmodified	_RVVCRVLMG_					0	0	0			REV__PDCD11|p.S154R|1|0.26|ENSG00000148843|chr10:103405079-103405079|A/C|missense_variant	REV__PDCD11|p.S154R|1|0.26|ENSG00000148843|chr10:103405079-103405079|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	516.7938232421875	2	516.793889	1031.57323	0.25999	0.00013436	-0.28519	-0.00014738	-0.025195	-1.3021E-05	516.7935904780685	48.19	0.77487	47.823	47.31	48.085	-0.36727					20	15	2	0	0	0	0.74258	1	17739	17739		2.3027	0	1	3459200	+		28933	17399	18384	18479	27807	27807					0.05870159547180265
RVWDTRTWDY	10	Unmodified	_RVWDTRTWDY_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-MSMS	HCT116MG_D190212_S1	1	699.3333129882812	2	699.333476	1396.6524	0.64134	0.00044851	-0.41634	-0.00029116	0.225	0.00015735	699.3327943706438	47.763	0.24659	47.763	47.646	47.893	0					8	4	3	0	0	0	0.57664	1	18181	18181		29.841	7.1825	1	27399000			28934	5356	18385	18480	27808	27808					-0.030061986933333174
RVWDTRTWDY	10	Unmodified	_RVWDTRTWDY_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	699.333476	1396.6524	1.0754	0.00075203	-1.2202	-0.0008533	-0.14481	-0.00010127	699.3326457330168	47.906	0.25727	47.773	47.584	47.841	-0.13281	0.0051674	-0.0002442	NaN	29.841	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71182000			28935	5356	18385	18480							-0.030061986933333174
RWADEEEDLY	10	Unmodified	_RWADEEEDLY_					0	0	0			REV__ENSG00000234438|ENST00000432196|KBTBD13	REV__ENSG00000234438|ENST00000432196|KBTBD13	MULTI-MSMS	HCT116MG_D190212_S2	2	663.2848510742188	2	663.285857	1324.55716	0.66579	0.00044161	-2.7929	-0.0018525	-2.1271	-0.0014109	663.2842930958936	31.629	0.31164	31.38	31.198	31.51	-0.24883					11	5	3	0	0	0	0.60826	1	11680	11680		27.629	3.6082	1	61769000	+		28936	14327	18386	18481	27809	27809					-0.09213596675044755
RWDPHWLLRRT	11	Unmodified	_RWDPHWLLRRT_					0	0	0		ENST00000431998.1_1_19:11849633-11849717:-|nuORF	ENST00000431998.1_1_19:11849633-11849717:-|nuORF	ENST00000431998.1_1_19:11849633-11849717:-|nuORF	MSMS	HCT116MG_D190212_S1	1	768.751953125	2	768.420751	1534.82695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.749	1	40.749	40.249	41.249	0								0	0	0	0.95636	1	15325	15325		2.9952	1.8019	1				28937	7859	18387	18482	27810	27810					0.08092846242470841
RWFPTMRRPRR	11	Unmodified	_RWFPTMRRPRR_					0	0	0			REV__ENST00000483190.1_1_5:132209629-132210135:+|nuORF	REV__ENST00000483190.1_1_5:132209629-132210135:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	520.2935180664062	3	520.293122	1557.85754	0.47992	0.0002497	0.4673	0.00024314	0.94723	0.00049284	520.2932789887107	14.676	0.15598	14.676	14.598	14.754	0					6	2	3	0	0	0	0.74191	1	4845	4845		0.073264	0.073264	1	8216400	+		28938	13005	18388	18483	27811	27811					0.10092301355871314
RWGGAASC	8	Unmodified	_RWGGAASC_					0	0	0			REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF	MSMS	HCT116MG_D190212_S4	4	404.18157958984375	2	404.181955	806.349357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.959	1	56.659	56.159	57.159	-0.3004								0	0	0	0.8837	1	21366	21366		0.79363	0	1		+		28939	14513	18389	18484	27812	27812					-0.06156412562609148
RWHWRARRREW	11	Unmodified	_RWHWRARRREW_					0	0	0			REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF	REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MSMS	HCT116MG_D190212_S1	1	847.9530029296875	2	847.953615	1693.89268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.984	1	33.984	33.484	34.484	0								0	0	0	0.96208	1	12595	12595		0	0	1		+		28940	16778	18390	18485	27813	27813					0.07348680208019687
RWINRLITIVM	11	Unmodified	_RWINRLITIVM_					0	0	0			REV__ENST00000519417.1_1_8:43529420-43529591:-|nuORF	REV__ENST00000519417.1_1_8:43529420-43529591:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	708.4232177734375	2	707.921206	1413.82786	0.9804	0.00069405	0.49439	0.00034999	1.4748	0.001044	707.9214274889353	52.692	1.2397	52.505	51.832	53.071	-0.18726					44	23	2	0	0	0	0.74191	1	20158	20158		1.3295	0.13619	1	33690000	+		28941	16222	18391	18486	27814	27814					0.13749924567196103
RWIRYPLLLVF	11	Unmodified	_RWIRYPLLLVF_					0	0	0			REV__ENSG00000178401|ENST00000549441|DNAJC22	REV__ENSG00000178401|ENST00000549441|DNAJC22	MULTI-MSMS	HCT116MG_D190212_S2	2	738.4478759765625	2	738.447914	1474.88128	0.99812	0.00073706	0.18343	0.00013545	1.1816	0.00087251	738.4479376971668	54.618	2.3582	54.428	53.636	55.994	-0.1894					155	45	6	0	0	0	0.74191	1	20744	20744		2.9952	0.26005	1	1200300000	+		28942	13603	18392	18487	27815	27815					0.1628304534133349
RWKFRAMRKIK	11	Unmodified	_RWKFRAMRKIK_					0	0	0		ENST00000530606.1_1_10:77055306-77055468:+|nuORF	ENST00000530606.1_1_10:77055306-77055468:+|nuORF	ENST00000530606.1_1_10:77055306-77055468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	507.6443786621094	3	507.310002	1518.90818	0.25899	0.00013139	0.45593	0.0002313	0.71492	0.00036269	507.31028220406074	55.009	1.307	54.718	53.829	55.136	-0.29181					36	24	3	0	0	0	0.74191	1	20758	20758		0	0	1	5263000			28943	8617	18393	18488	27816	27816					0.16947830680874176
RWKFRAMRKIK	11	Unmodified	_RWKFRAMRKIK_					0	0	0		ENST00000530606.1_1_10:77055306-77055468:+|nuORF	ENST00000530606.1_1_10:77055306-77055468:+|nuORF	ENST00000530606.1_1_10:77055306-77055468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	507.6444091796875	3	507.310002	1518.90818	0.28117	0.00014264	0.012458	6.32E-06	0.29363	0.00014896	507.30995748901506	55.102	1.7715	54.785	53.521	55.292	-0.31774					86	33	4	0	0	0	0.74191	3	20263	20263;20508;20737		0	0	1	35934000			28944	8617	18393	18488	27817;27818;27819	27817					0.16947830680874176
RWKFRAMRKIK	11	Unmodified	_RWKFRAMRKIK_					0	0	0		ENST00000530606.1_1_10:77055306-77055468:+|nuORF	ENST00000530606.1_1_10:77055306-77055468:+|nuORF	ENST00000530606.1_1_10:77055306-77055468:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	760.4039306640625	2	760.461365	1518.90818	0.96702	0.00073538	-0.24054	-0.00018292	0.72648	0.00055246	760.4610155510223	55.1	1.1984	54.782	54.146	55.344	-0.31774					72	22	5	0	0	0	0.74191	1	20790	20790		1.3295	1.3295	1	41885000			28945	8617	18393	18488	27820	27820					0.16947830680874176
RWKRSRRRRRK	11	Unmodified	_RWKRSRRRRRK_					0	0	0			REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	547.6804809570312	3	547.68048	1640.01961	0.5431	0.00029744	-0.69602	-0.00038119	-0.15292	-8.375E-05	548.0143610313283	56.316	0.41492	56.134	55.949	56.364	-0.18261					15	7	3	0	0	0	0.74191	1	21745	21745		0.073264	0.073264	1	12325000	+		28946	15403	18394	18489	27821	27821					0.22520026153028994
RWLFLFLFQK	10	Unmodified	_RWLFLFLFQK_					0	0	0		nc|ENSG00000215866|Q8N9X3|LINC01356	nc|ENSG00000215866|Q8N9X3|LINC01356	nc|ENSG00000215866|Q8N9X3|LINC01356	MULTI-MSMS	HCT116MG_D190212_S4	4	699.4097290039062	2	699.408258	1396.80196	0.8202	0.00057366	0.21477	0.00015021	1.035	0.00072387	699.408236603519	54.383	1.9277	54.059	53.151	55.078	-0.32349					66	36	3	0	0	0	0.89272	1	20439	20439		0.40072	0.050084	1	14454000			28947	9637	18395	18490	27822	27822					0.11943398387188608
RWLLAPLGRF	10	Unmodified	_RWLLAPLGRF_					0	0	0			REV__ENST00000486187.5_1_10:43090126-43133998:-|nuORF	REV__ENST00000486187.5_1_10:43090126-43133998:-|nuORF	MSMS	HCT116MG_D190212_S3	3	410.2481689453125	3	410.248625	1227.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.095	1	61.864	61.364	62.364	-0.23129								0	0	0	0.96769	1	23714	23714		0.77653	0.14971	1		+		28948	15992	18396	18491	27823	27823					0.11929385521830227
RWLLAPLGRF	10	Unmodified	_RWLLAPLGRF_					0	0	0			REV__ENST00000486187.5_1_10:43090126-43133998:-|nuORF	REV__ENST00000486187.5_1_10:43090126-43133998:-|nuORF	MSMS	HCT116MG_D190212_S3	3	410.26641845703125	3	410.248625	1227.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.303	1	62.072	61.572	62.572	-0.23129								0	0	0	0.96769	1	23798	23798		0.77653	0.078866	1		+		28949	15992	18396	18491	27824	27824					0.11929385521830227
RWLRFWLLFWL	11	Unmodified	_RWLRFWLLFWL_					0	0	0		ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	MSMS	HCT116MG_D190212_S2	2	545.9803466796875	3	545.98188	1634.92381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2055	1	1.1992	0.69923	1.6992	-0.0062599								0	0	0	0.96208	1	393	393		0	0	1				28950	8628	18397	18492	27825	27825					0.13174440469583715
RWLWDYPPQE	10	Unmodified	_RWLWDYPPQE_					0	0	0			REV__ENST00000369878.8_1_10:104678182-104678257:+|nuORF	REV__ENST00000369878.8_1_10:104678182-104678257:+|nuORF	MSMS	HCT116MG_D190212_S3	3	695.3355712890625	2	695.332944	1388.65134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.547	1	17.629	17.129	18.129	0.081358								0	0	0	0.7978	1	5902	5902		29.082	15.176	1		+		28951	15152	18398	18493	27826	27826					-0.02744413062282547
RWLWDYPPQE	10	Unmodified	_RWLWDYPPQE_					0	0	0			REV__ENST00000369878.8_1_10:104678182-104678257:+|nuORF	REV__ENST00000369878.8_1_10:104678182-104678257:+|nuORF	MSMS	HCT116MG_D190212_S4	4	695.336669921875	2	695.332944	1388.65134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.705	1	17.53	17.03	18.03	-0.17501								0	0	0	0.89062	1	5892	5892		17.113	7.7298	1		+		28952	15152	18398	18493	27827	27827					-0.02744413062282547
RWLWWQPWWWK	11	Unmodified	_RWLWWQPWWWK_					0	0	0		chr12:54282820-54283827|481|25.33|0.0|21.27|+|1|HNRNPA1,HNRNPA1|1	chr12:54282820-54283827|481|25.33|0.0|21.27|+|1|HNRNPA1,HNRNPA1|1	chr12:54282820-54283827|481|25.33|0.0|21.27|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S2	2	879.4461669921875	2	879.446237	1756.87792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.119	1	48.965	48.465	49.465	-0.15405								0	0	0	0.96208	1	18788	18788		0	0	1				28953	442	18399	18494	27828	27828					0.029757952873296745
RWMQYRPAPGR	11	Unmodified	_RWMQYRPAPGR_					0	0	0			REV__ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	REV__ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	709.3699951171875	2	709.36713	1416.71971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.419	1	19.478	18.978	19.978	0.05983								0	0	0	0.87053	1	6657	6657		23.79	5.4167	1		+		28954	9918	18400	18495	27829	27829					0.02801553036624682
RWMQYRPAPGR	11	Unmodified	_RWMQYRPAPGR_					0	0	0			REV__ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	REV__ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	709.36865234375	2	709.36713	1416.71971	0.75598	0.00053627	1.1637	0.00082548	1.9197	0.0013617	709.367886897991	19.739	0.30217	19.545	19.33	19.632	-0.19368					12	5	3	0	0	0	0.65047	1	6689	6689		29.841	7.1825	1	2405000	+		28955	9918	18400	18495	27830	27830					0.02801553036624682
RWMQYRPAPGR	11	Unmodified	_RWMQYRPAPGR_					0	0	0			REV__ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	REV__ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	709.36713	1416.71971	0.89348	0.00063381	1.5075	0.0010694	2.401	0.0017032	709.8696288479882	20.218	0.26035	19.839	19.657	19.917	-0.37949	0.14669	0.00041219	NaN	29.841	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4617300	+		28956	9918	18400	18495							0.02801553036624682
RWMQYRPAPGR	11	Unmodified	_RWMQYRPAPGR_					0	0	0			REV__ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	REV__ALPK3|p.P1112Qfs*48|1|0.27|ENSG00000136383|chr15:84857464-84857464|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	709.36713	1416.71971	0.75598	0.00053627	1.1637	0.00082548	1.9197	0.0013617	709.367886897991	19.739	0.30217	19.545	19.33	19.632	-0.19368	-0.14669	-7.558E-05	NaN	29.841	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2405000	+		28957	9918	18400	18495							0.02801553036624682
RWNHWWDKC	9	Unmodified	_RWNHWWDKC_					0	0	0		ENST00000250405.9_2_14:23777280-23778100:+|nuORF	ENST00000250405.9_2_14:23777280-23778100:+|nuORF	ENST00000250405.9_2_14:23777280-23778100:+|nuORF	MSMS	HCT116MG_D190212_S1	1	665.799072265625	2	665.798549	1329.58254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.375	1	13.375	12.875	13.875	0								0	0	0	0.77012	1	4342	4342		0.45834	0.057624	1				28958	6796	18401	18496	27831	27831					-0.06906355842943412
RWNWLNWDP	9	Unmodified	_RWNWLNWDP_					0	0	0		ENST00000340990.9_1_1:202920095-202927322:-|nuORF;ENST00000426229.1_2_1:202920095-202923414:-|nuORF	ENST00000340990.9_1_1:202920095-202927322:-|nuORF	ENST00000340990.9_1_1:202920095-202927322:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	643.8071899414062	2	643.806897	1285.59924	0.70448	0.00045355	-1.243	-0.00080026	-0.53853	-0.00034671	643.8063880524904	27.588	0.20648	27.588	27.49	27.696	0					5	3	2	0	0	0	0.2615	1	10047	10047		6.7232	0.99131	1	5409000			28959	7215	18402	18497	27832	27832					-0.03213531685378257
RWPLLRQWWRW	11	Unmodified	_RWPLLRQWWRW_					0	0	0			REV__ENSG00000176410|ENST00000395176|DNAJC30	REV__ENSG00000176410|ENST00000395176|DNAJC30	MULTI-MSMS	HCT116MG_D190212_S1	1	561.6447143554688	3	561.644149	1681.91062	0.34161	0.00019186	0.2003	0.0001125	0.54191	0.00030436	561.6443826827641	19.804	0.157	19.804	19.704	19.861	0					6	2	3	0	0	0	0.74191	1	6902	6902		0.08335	0.08335	1	8068100	+		28960	13541	18403	18498	27833	27833					0.09694002410196845
RWPWRWCWRRW	11	Unmodified	_RWPWRWCWRRW_					0	0	0			REV__nc|ENSG00000127252|Q9HDD0-2|PLAAT1	REV__nc|ENSG00000127252|Q9HDD0-2|PLAAT1	MSMS	HCT116MG_D190212_S2	2	887.4476928710938	2	887.444037	1772.87352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.023	1	35.895	35.395	36.395	-0.12799								0	0	0	0.96149	1	13457	13457		0.30703	0.30703	1		+		28961	17121	18404	18499	27834	27834					0.018000075927602666
RWQKRRRIPQK	11	Unmodified	_RWQKRRRIPQK_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-MSMS	HCT116MG_D190212_S1	1	518.3215942382812	3	517.986687	1550.93823	0.29911	0.00015493	0.55731	0.00028868	0.85642	0.00044361	517.986648363208	60.97	1.8608	60.97	60.491	62.352	0					47	35	2	0	0	0	0.74191	4	23590	23590;23641;23826;24074		0	0	1	17314000			28962	4010	18405	18500	27835;27836;27837;27838	27835					0.18479905670437802
RWQVGAKDYHR	11	Unmodified	_RWQVGAKDYHR_					0	0	0			REV__nc|ENSG00000163576|Q8N7U6-2|EFHB	REV__nc|ENSG00000163576|Q8N7U6-2|EFHB	MULTI-MSMS	HCT116MG_D190212_S4	4	708.3672485351562	2	708.368184	1414.72182	0.88893	0.00062969	-0.80129	-0.00056761	0.087636	6.2079E-05	708.3675567056084	33.033	0.49461	32.651	32.206	32.7	-0.38223					25	15	3	0	0	0	0.73981	1	11988	11988		7.1017	0.89594	1	26380000	+		28963	16104	18406	18501	27839	27839					0.031043050460766608
RWRENRCY	8	Unmodified	_RWRENRCY_					0	0	0		ENST00000563604.1_1_15:43017281-43017455:-|nuORF	ENST00000563604.1_1_15:43017281-43017455:-|nuORF	ENST00000563604.1_1_15:43017281-43017455:-|nuORF	MSMS	HCT116MG_D190212_S1	1	394.85784912109375	3	394.857691	1181.55124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.415	1	10.415	9.915	10.915	0								0	0	0	0.8837	1	3195	3195		0.45834	0.18932	1				28964	8836	18407	18502	27840	27840					-0.0322692887705216
RWRERAVRWPR	11	Unmodified	_RWRERAVRWPR_					0	0	0		ENST00000436427.1_3_1:43148660-43161876:+|nuORF	ENST00000436427.1_3_1:43148660-43161876:+|nuORF	ENST00000436427.1_3_1:43148660-43161876:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	784.4449462890625	2	784.445092	1566.87563	0.71291	0.00055924	-1.8874	-0.0014806	-1.1745	-0.00092132	784.4435839941923	45.255	0.36547	44.946	44.837	45.202	-0.30927					9	6	2	0	0	0	0.73981	1	16960	16960		7.1017	2.2047	1	5631700			28965	7886	18408	18503	27841	27841					0.11486759602234997
RWRERAVRWPR	11	Unmodified	_RWRERAVRWPR_					0	0	0		ENST00000436427.1_3_1:43148660-43161876:+|nuORF	ENST00000436427.1_3_1:43148660-43161876:+|nuORF	ENST00000436427.1_3_1:43148660-43161876:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	784.445092	1566.87563	0.92335	0.00072432	-1.7418	-0.0013663	-0.81843	-0.00064202	784.9451931022172	45.334	0.25938	44.961	44.832	45.091	-0.37266	0.0067309	0.00015618	NaN	7.1017	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5047000			28966	7886	18408	18503							0.11486759602234997
RWRLLFLGF	9	Unmodified	_RWRLLFLGF_					0	0	0			REV__ENST00000410023.5_1_2:102781350-102781467:+|nuORF	REV__ENST00000410023.5_1_2:102781350-102781467:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	604.3582763671875	2	604.358568	1206.70258	0.38726	0.00023404	-0.33732	-0.00020386	0.049932	3.0177E-05	604.3582140410957	59.221	0.75505	59.221	58.923	59.678	0					46	29	2	0	0	0	0.76814	1	22810	22810		0.52476	0	1	885270	+		28967	15442	18409	18504	27842	27842					0.10750000493112566
RWRLPLTCLLL	11	Unmodified	_RWRLPLTCLLL_					0	0	0		ENSG00000140519|ENST00000268122|RHCG	ENSG00000140519|ENST00000268122|RHCG	ENSG00000140519|ENST00000268122|RHCG	MULTI-MSMS	HCT116MG_D190212_S1	1	461.94818115234375	3	461.947959	1382.82205	0.17285	7.9847E-05	0.68427	0.0003161	0.85712	0.00039594	461.94818380279725	55.939	0.30788	55.939	55.811	56.119	0					8	5	3	0	0	0	0.74191	1	21504	21504		0.50596	0.051438	1	65479000			28968	3669	18410	18505	27843	27843					0.14594826055531485
RWRLQLRRRQL	11	Unmodified	_RWRLQLRRRQL_					0	0	0		ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	527.6615600585938	3	527.662203	1579.96478	0.36402	0.00019208	-0.3245	-0.00017123	0.039519	2.0853E-05	527.6622257774335	56.001	0.61652	56.001	55.709	56.326	0					20	11	3	0	0	0	0.36628	1	21401	21401		0.08335	0	1	8726800			28969	7338	18411	18506	27844	27844					0.1979959456175493
RWRLRRRRRP	10	Unmodified	_RWRLRRRRRP_					0	0	0			REV__MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant	REV__MNX1|p.P18Hfs*204|1|0.21|ENSG00000130675|chr7:157010298-157010298|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	502.9846496582031	3	503.318771	1506.93448	0.54201	0.00027281	-0.14093	-7.0933E-05	0.40108	0.00020187	503.3186837783424	56.825	0.57993	56.646	56.315	56.895	-0.17904					19	10	3	0	0	0	0.31198	1	21922	21922		0.69767	0	1	27455000	+		28970	17033	18412	18507	27845	27845					0.2012928068720612
RWRLWLYYYLM	11	Unmodified	_RWRLWLYYYLM_					0	0	0			REV__ENST00000306621.7_1_4:76955462-76955498:-|nuORF	REV__ENST00000306621.7_1_4:76955462-76955498:-|nuORF	MSMS	HCT116MG_D190212_S3	3	831.9357299804688	2	831.934314	1661.85407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.533	1	41.23	40.73	41.73	-0.30257								0	0	0	0.96208	1	15450	15450		0	0	1		+		28971	14812	18413	18508	27846	27846					0.04962193738674614
RWRMRKLKYKH	11	Unmodified	_RWRMRKLKYKH_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	534.6495361328125	3	534.648906	1600.92489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.55	1	15.223	14.723	15.723	-0.32684								0	0	0	0.9619	1	5174	5174		0.094841	0.021578	1				28972	3407	18414	18509	27847	27847					0.14846331566855042
RWRQRRRRG	9	Unmodified	_RWRQRRRRG_					0	0	0			REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF	REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	664.3975219726562	2	663.895569	1325.77659	0.89111	0.0005916	-0.019145	-1.271E-05	0.87196	0.00057889	663.895503008309	53.112	2.0893	52.809	51.989	54.079	-0.30305					80	39	3	0	0	0	0.74607	1	20177	20177		2.0598	0.21551	1	10236000	+		28973	16263	18415	18510	27848	27848					0.12672781428000235
RWRQRRRRG	9	Unmodified	_RWRQRRRRG_					0	0	0			REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF	REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	663.895569	1325.77659	0.89111	0.0005916	-0.019145	-1.271E-05	0.87196	0.00057889	663.895503008309	53.112	2.0893	52.809	51.989	54.079	-0.30305	-0.11374	-0.00024119	NaN	2.0598	80	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10236000	+		28974	16263	18415	18510							0.12672781428000235
RWRQRRRRG	9	Unmodified	_RWRQRRRRG_					0	0	0			REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF	REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	663.895569	1325.77659	0.69235	0.00045965	0.1866	0.00012388	0.87895	0.00058353	663.8955586281077	53.372	2.6031	53.037	51.786	54.389	-0.33473	0.11374	3.2003E-05	NaN	2.0598	139	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46138000	+		28975	16263	18415	18510							0.12672781428000235
RWRRRRRRRWR	11	Unmodified	_RWRRRRRRRWR_					0	0	0		SLC4A2|p.E125Rfs*120|1|0.33|ENSG00000164889|chr7:151064677-151064677|G/-|frameshift_variant	REV__SLC4A2|p.E125Rfs*120|1|0.33|ENSG00000164889|chr7:151064677-151064677|G/-|frameshift_variant	REV__SLC4A2|p.E125Rfs*120|1|0.33|ENSG00000164889|chr7:151064677-151064677|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	898.5493774414062	2	898.546871	1795.07919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.171	1	47.171	46.671	47.671	0								0	0	0	0.96208	1	17916	17916		0	0	1				28976	17528	18416	18511	27849	27849					0.21345341887058566
RWRSHLTWRPL	11	Unmodified	_RWRSHLTWRPL_					0	0	0		ENST00000494792.1_1_10:126305892-126306030:-|nuORF	ENST00000494792.1_1_10:126305892-126306030:-|nuORF	ENST00000494792.1_1_10:126305892-126306030:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	503.24517822265625	3	503.284621	1506.83203	0.64767	0.00032596	-2.0963	-0.001055	-1.4486	-0.00072905	503.2844382024698	52.285	0.20687	52.098	51.986	52.193	-0.18726					5	3	2	0	0	0	0.36618	1	20071	20071		1.3296	0.21989	1	9449000			28977	8374	18417	18512	27850	27850					0.09889150105095723
RWRWWQRLLPW	11	Unmodified	_RWRWWQRLLPW_					0	0	0		ENSG00000176410|ENST00000395176|DNAJC30	ENSG00000176410|ENST00000395176|DNAJC30	ENSG00000176410|ENST00000395176|DNAJC30	MSMS	HCT116MG_D190212_S1	1	841.9633178710938	2	841.962586	1681.91062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.498	1	38.498	37.998	38.998	0								0	0	0	0.96208	1	14415	14415		0	0	1				28978	5420	18418	18513	27851	27851					0.09694002410219582
RWRYFTSK	8	Unmodified	_RWRYFTSK_					0	0	0			REV__VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	REV__VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	381.8741149902344	3	381.873447	1142.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.9066	1	2.9066	2.4066	3.4066	0								0	0	0	0.8837	1	874	874		0.40072	0	1		+		28979	12043	18419	18514	27852	27852					0.03291673665603412
RWRYFTSK	8	Unmodified	_RWRYFTSK_					0	0	0			REV__VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	REV__VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	381.8748474121094	3	381.873447	1142.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1265	1	6.1265	5.6265	6.6265	0								0	0	0	0.8837	1	1844	1844		0.40072	0	1		+		28980	12043	18419	18514	27853	27853					0.03291673665603412
RWRYFTSK	8	Unmodified	_RWRYFTSK_					0	0	0			REV__VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	REV__VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	381.8748779296875	3	381.873447	1142.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6174	1	8.6174	8.1174	9.1174	0								0	0	0	0.8837	1	2599	2599		0.40072	0	1		+		28981	12043	18419	18514	27854	27854					0.03291673665603412
RWRYFTSK	8	Unmodified	_RWRYFTSK_					0	0	0			REV__VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	REV__VRTN|p.G328Afs*47|2|0.22|ENSG00000133980|chr14:74357760-74357760|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	381.8747253417969	3	381.873447	1142.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.937	1	64.736	64.236	65.236	-0.2009								0	0	0	0.8837	1	24667	24667		0.40072	0	1		+		28982	12043	18419	18514	27855	27855					0.03291673665603412
RWSRPWWPREW	11	Unmodified	_RWSRPWWPREW_					0	0	0			REV__ENST00000481276.1_1_1:1602946-1608282:-|nuORF	REV__ENST00000481276.1_1_1:1602946-1608282:-|nuORF	MSMS	HCT116MG_D190212_S3	3	821.4141235351562	2	821.412926	1640.8113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.426	1	48.11	47.61	48.61	-0.31596								0	0	0	0.96157	1	18213	18213		0.26902	0.26902	1		+		28983	15955	18420	18515	27856	27856					0.01652559725471292
RWVWCYRHP	9	Unmodified	_RWVWCYRHP_					0	0	0			REV__ENST00000475983.1_1_19:40877588-40880546:+|nuORF	REV__ENST00000475983.1_1_19:40877588-40880546:+|nuORF	MSMS	HCT116MG_D190212_S1	1	434.8821716308594	3	434.881948	1301.62402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.793	1	63.793	63.293	64.293	0								0	0	0	0.7701	1	24640	24640		0.23584	0	1		+		28984	15911	18421	18516	27857	27857					-0.014731750836290303
RWWFRRLFLIF	11	Unmodified	_RWWFRRLFLIF_					0	0	0		ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	820.688720703125	2	820.472255	1638.92996	0.020747	1.7022E-05	-0.12524	-0.00010276	-0.10449	-8.5735E-05	820.4718761890666	38.318	0.31269	38.318	38.123	38.436	0					12	5	3	0	0	0	0.74191	1	14270	14270		0.30703	0.30703	1	15146000			28985	6940	18422	18517	27858	27858					0.13604958701102987
RWWFRRLFLIF	11	Unmodified	_RWWFRRLFLIF_					0	0	0		ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	547.3180541992188	3	547.317262	1638.92996	0.31904	0.00017462	-0.015906	-8.7058E-06	0.30313	0.00016591	547.3171746334508	38.627	0.67517	38.326	37.833	38.508	-0.30137					27	12	4	0	0	0	0.74191	1	14288	14288		0	0	1	22901000			28986	6940	18422	18517	27859	27859					0.13604958701102987
RWWRPCERRWT	11	Unmodified	_RWWRPCERRWT_					0	0	0			REV__ENST00000599470.5_2_19:39616427-39616532:+|nuORF	REV__ENST00000599470.5_2_19:39616427-39616532:+|nuORF	MSMS	HCT116MG_D190212_S3	3	816.4102783203125	2	816.40986	1630.80517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.688	1	34.391	33.891	34.891	-0.29707								0	0	0	0.95954	1	12777	12777		1.3295	0	1		+		28987	16741	18423	18518	27860	27860					0.014997182222487027
RWWTRMSRIRR	11	Unmodified	_RWWTRMSRIRR_					0	0	0			REV__ENST00000373518.1_1_X:72347145-72347370:-|nuORF	REV__ENST00000373518.1_1_X:72347145-72347370:-|nuORF	MSMS	HCT116MG_D190212_S2	2	802.4464721679688	2	802.446777	1602.879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.218	1	22.833	22.333	23.333	-0.3852								0	0	0	0.96208	1	8264	8264		0	0	1		+		28988	15190	18424	18519	27861	27861					0.1016768638457961
RWYLYLIKQLK	11	Unmodified	_RWYLYLIKQLK_					0	0	0			REV__ENST00000496806.2_1_6:87925633-87969808:+|nuORF	REV__ENST00000496806.2_1_6:87925633-87969808:+|nuORF	MSMS	HCT116MG_D190212_S2	2	762.4607543945312	2	762.458479	1522.90241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.514	1	59.354	58.854	59.854	-0.16012								0	0	0	0.96141	1	23014	23014		0.35063	0.35063	1		+		28989	15145	18425	18520	27862	27862					0.16187010650196498
RWYRHQWRRR	10	Unmodified	_RWYRHQWRRR_					0	0	0			REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF	REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF	MSMS	HCT116MG_D190212_S3	3	800.4362182617188	2	800.435058	1598.85556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.484	1	56.201	55.701	56.701	-0.28367								0	0	0	0.96937	1	21444	21444		0.40072	0.093686	1		+		28990	16496	18426	18521	27863	27863					0.0800900866227039
RYAADRRRYRR	11	Unmodified	_RYAADRRRYRR_					0	0	0		ENSG00000060138|ENST00000228251|YBX3;ENST00000542002.5_1_12:10853889-10868397:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3	ENSG00000060138|ENST00000228251|YBX3	ENSG00000060138|ENST00000228251|YBX3	MULTI-MSMS	HCT116MG_D190212_S4	4	769.9315185546875	2	769.929806	1537.84506	0.83466	0.00064263	1.169	0.00090006	2.0037	0.0015427	769.9306870642977	29.98	0.20801	29.623	29.493	29.701	-0.3571					6	3	2	0	0	0	0.74191	1	10877	10877		0.26902	0	1	3347900			28991	1106	18427	18522	27864	27864					0.0976498121719942
RYFMIVSY	8	Unmodified	_RYFMIVSY_					0	0	0			REV__ENST00000377989.8_2_6:25138607-25138802:-|nuORF	REV__ENST00000377989.8_2_6:25138607-25138802:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	539.7734985351562	2	539.773145	1077.53174	-0.20064	-0.0001083	0.61544	0.0003322	0.4148	0.0002239	539.7734368057584	15.009	0.54014	14.849	14.633	15.173	-0.16089					21	10	3	0	0	0	0.8672	1	4788	4788		2.3027	0	1	1469200	+		28992	15244	18428	18523	27865	27865					-0.003926979405150632
RYFPVFEKILR	11	Unmodified	_RYFPVFEKILR_					0	0	0		nc|ENSG00000170899|O15217-2|GSTA4;GSTA4|p.P208Lfs*6|1|0.31|ENSG00000170899|chr6:52978516-52978516|G/-|frameshift_variant;ENSG00000170899|ENST00000370963|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	MSMS	HCT116MG_D190212_S1	1	734.42529296875	2	734.427179	1466.8398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.333	1	47.333	46.833	47.833	0								0	0	0	0.83401	1	17981	17981		28.495	2.2264	1				28993	5166	18429	18524	27866	27866					0.12505864582021786
RYFSIKRPLTY	11	Unmodified	_RYFSIKRPLTY_					0	0	0		CHRM5|p.T133K|1|0.14|ENSG00000184984|chr15:34063115-34063115|C/A|missense_variant	CHRM5|p.T133K|1|0.14|ENSG00000184984|chr15:34063115-34063115|C/A|missense_variant	CHRM5|p.T133K|1|0.14|ENSG00000184984|chr15:34063115-34063115|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	721.962890625	2	722.408986	1442.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.169	1	43.795	43.295	44.295	-0.37373								0	0	0	0.94538	1	16263	16263		8.7454	2.5396	1				28994	459	18430	18525	27867	27867					0.0997298768534165
RYHRVIHIN	9	Unmodified	_RYHRVIHIN_					0	0	0		ENSG00000187266|ENST00000222139|EPOR;nc|ENSG00000187266|P19235-3|EPOR;nc|ENSG00000187266|P19235-2|EPOR	ENSG00000187266|ENST00000222139|EPOR	ENSG00000187266|ENST00000222139|EPOR	MSMS	HCT116MG_D190212_S2	2	403.232666015625	3	403.231746	1206.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5199	1	4.4308	3.9308	4.9308	-0.089082								0	0	0	0.77018	1	1424	1424		0.26902	0.1097	1				28995	5933	18431	18526	27868	27868					0.07833856196839406
RYKKLVDL	8	Unmodified	_RYKKLVDL_					0	0	0			REV__NME9|p.E75K|3|0.4|ENSG00000181322|chr3:138318192-138318192|C/T|missense_variant	REV__NME9|p.E75K|3|0.4|ENSG00000181322|chr3:138318192-138318192|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	517.8193969726562	2	517.821484	1033.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.279	1	49.279	48.779	49.779	0								0	0	0	0.8837	1	18773	18773		4.756	0	1		+		28996	17350	18432	18527	27869	27869					0.11294612610936383
RYKLRILRMK	10	Unmodified	_RYKLRILRMK_					0	0	0		ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	MULTI-MSMS	HCT116MG_D190212_S4	4	459.6275939941406	3	459.627219	1375.85983	0.23697	0.00010892	0.92878	0.00042689	1.1658	0.00053581	459.6275376019817	55.115	0.41717	54.797	54.563	54.98	-0.31774					12	7	2	0	0	0	0.8938	1	20661	20661		0.13989	0.017027	1	4486800			28997	4644	18433	18528	27870	27870					0.18693337040963343
RYKLRILRMK	10	Unmodified	_RYKLRILRMK_					0	0	0		ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	459.627219	1375.85983	0.15032	6.9092E-05	0.90753	0.00041713	1.0579	0.00048622	459.6276287358724	54.956	0.61275	54.768	54.457	55.07	-0.18797	-0.029015	3.508E-05	NaN	0.13989	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52604000			28998	4644	18433	18528							0.18693337040963343
RYKLRILRMK	10	Unmodified	_RYKLRILRMK_					0	0	0		ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	MULTI-MATCH	HCT116MG_D190212_S3	3		3	459.627219	1375.85983	0.42591	0.00019576	0.49987	0.00022976	0.92578	0.00042551	459.6274605371983	55.117	0.15709	54.826	54.717	54.874	-0.2918	0.028673	-0.00052703	NaN	0.13989	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2064400			28999	4644	18433	18528							0.18693337040963343
RYKYRRWRQWL	11	Unmodified	_RYKYRRWRQWL_					0	0	0			REV__nc|ENSG00000155542|Q8NE22-2|SETD9	REV__nc|ENSG00000155542|Q8NE22-2|SETD9	MSMS	HCT116MG_D190212_S2	2	855.9789428710938	2	855.976225	1709.9379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.948	1	44.857	44.357	45.357	-0.091129								0	0	0	0.96208	1	17082	17082		0	0	1		+		29000	12704	18434	18529	27871	27871					0.11132485950588489
RYLGDSVLEY	10	Unmodified	_RYLGDSVLEY_					0	0	0			REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	HCT116MG_D190212_S2	2	607.8063354492188	2	607.806228	1213.5979	0.34212	0.00020794	0.04204	2.5552E-05	0.38416	0.0002335	607.8062193911073	43.354	0.25834	43.281	43.149	43.407	-0.073376					11	4	3	0	0	0	0.48137	1	16460	16460		36.506	8.8774	1	30965000	+		29001	12679;17167	18435	18530	27872	27872					-0.0003521056476074591
RYNDGSGG	8	Unmodified	_RYNDGSGG_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MSMS	HCT116MG_D190212_S2	2	413.1781005859375	2	413.177924	824.341294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.815	1	58.649	58.149	59.149	-0.1653								0	0	0	0.8837	1	22739	22739		0.79363	0	1		+		29002	17183	18436	18531	27873	27873					-0.0779026827837015
RYQHWRWTQRN	11	Unmodified	_RYQHWRWTQRN_					0	0	0			REV__ENSG00000186143|ENST00000335524|PRR30	REV__ENSG00000186143|ENST00000335524|PRR30	MULTI-MSMS	HCT116MG_D190212_S1	1	815.9100952148438	2	815.908539	1629.80253	0.92328	0.00075331	0.5124	0.00041807	1.4357	0.0011714	815.9092138138391	55.632	0.25727	55.632	55.503	55.76	0					7	4	3	0	0	0	0.74191	1	21371	21371		0.30703	0.03801	1	66338000	+		29003	13877	18437	18532	27874	27874					0.012815860889759279
RYQHWRWTQRN	11	Unmodified	_RYQHWRWTQRN_					0	0	0			REV__ENSG00000186143|ENST00000335524|PRR30	REV__ENSG00000186143|ENST00000335524|PRR30	MULTI-MSMS	HCT116MG_D190212_S3	3	815.9097290039062	2	815.908539	1629.80253	1.0714	0.00087416	0.73977	0.00060358	1.8112	0.0014777	815.9090458011041	55.832	0.31596	55.544	55.411	55.727	-0.28773					11	5	3	0	0	0	0.74191	1	21205	21205		0.30703	0.03801	1	11302000	+		29004	13877	18437	18532	27875	27875					0.012815860889759279
RYQHWRWTQRN	11	Unmodified	_RYQHWRWTQRN_					0	0	0			REV__ENSG00000186143|ENST00000335524|PRR30	REV__ENSG00000186143|ENST00000335524|PRR30	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	815.908539	1629.80253	0.92328	0.00075331	0.5124	0.00041807	1.4357	0.0011714	815.9092138138391	55.632	0.25727	55.632	55.503	55.76	0	0.088325	-6.005E-05	NaN	0.30703	7	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66338000	+		29005	13877	18437	18532							0.012815860889759279
RYQHWRWTQRN	11	Unmodified	_RYQHWRWTQRN_					0	0	0			REV__ENSG00000186143|ENST00000335524|PRR30	REV__ENSG00000186143|ENST00000335524|PRR30	MULTI-MATCH	HCT116MG_D190212_S2	2		2	815.908539	1629.80253	0.92745	0.00075671	-0.28305	-0.00023095	0.64439	0.00052577	816.4090911011788	55.694	0.15543	55.509	55.431	55.587	-0.18565	-0.034887	-0.0013581	NaN	0.30703	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10133000	+		29006	13877	18437	18532							0.012815860889759279
RYQHWRWTQRN	11	Unmodified	_RYQHWRWTQRN_					0	0	0			REV__ENSG00000186143|ENST00000335524|PRR30	REV__ENSG00000186143|ENST00000335524|PRR30	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	815.908539	1629.80253	1.0714	0.00087416	0.73977	0.00060358	1.8112	0.0014777	815.9090458011041	55.832	0.31596	55.544	55.411	55.727	-0.28773	0.00076093	0.00031097	NaN	0.30703	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11302000	+		29007	13877	18437	18532							0.012815860889759279
RYQHWRWTQRN	11	Unmodified	_RYQHWRWTQRN_					0	0	0			REV__ENSG00000186143|ENST00000335524|PRR30	REV__ENSG00000186143|ENST00000335524|PRR30	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	815.908539	1629.80253	1.0133	0.00082673	0.55908	0.00045616	1.5723	0.0012829	816.4103638027527	55.802	0.26045	55.49	55.402	55.663	-0.312	-0.054199	1.612E-05	NaN	0.30703	11	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5289100	+		29008	13877	18437	18532							0.012815860889759279
RYQKLKKKER	10	Unmodified	_RYQKLKKKER_					0	0	0		nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-4|PARN	MSMS	HCT116MG_D190212_S1	1	688.92626953125	2	688.927877	1375.8412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.785	1	61.785	61.285	62.285	0								0	0	0	0.95507	1	23846	23846		3.5965	0	1				29009	9477	18438	18533	27876	27876					0.16831498670762812
RYRFRRFIQQF	11	Unmodified	_RYRFRRFIQQF_					0	0	0		JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant;JAK2|p.F556Lfs*12|1|0.35|ENSG00000096968|chr9:5072515-5072515|T/-|frameshift_variant;ENSG00000096968|ENST00000381652|JAK2	JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant	JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	808.9503173828125	2	808.949676	1615.8848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.676	1	30.676	30.176	31.176	0								0	0	0	0.96208	1	11260	11260		0	0	1				29010	1624	18439	18534	27877	27877					0.10149108167934173
RYRLCYNRF	9	Unmodified	_RYRLCYNRF_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MSMS	HCT116MG_D190212_S2	2	430.88812255859375	3	430.888991	1289.64514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6499	1	4.5312	4.0312	5.0312	-0.11871								0	0	0	0.77018	1	1462	1462		0.26902	0.1097	1		+		29011	11185	18440	18535	27878	27878					0.011907902252232816
RYRQRYEKHYH	11	Unmodified	_RYRQRYEKHYH_					0	0	0			REV__ENST00000600588.1_1_19:6593418-6593715:+|nuORF	REV__ENST00000600588.1_1_19:6593418-6593715:+|nuORF	MSMS	HCT116MG_D190212_S1	1	818.41650390625	2	818.416197	1634.81784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.851	1	32.851	32.351	33.351	0								0	0	0	0.96208	1	12137	12137		0	0	1		+		29012	16747	18441	18536	27879	27879					0.025824528861903673
RYRRLQRRLIR	11	Unmodified	_RYRRLQRRLIR_					0	0	0			REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	794.0057373046875	2	793.502941	1584.99133	0.75199	0.0005967	0.26116	0.00020723	1.0131	0.00080394	793.5030276049322	60.865	2.5307	60.865	60.081	62.612	0					155	48	4	0	0	0	0.74191	5	23284	23284;23293;23520;23751;23983		0.30703	0.30703	1	95409000	+		29013	17481	18442	18537	27880;27881;27882;27883;27884	27880					0.22223283453081422
RYRRLQRRLIR	11	Unmodified	_RYRRLQRRLIR_					0	0	0			REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	529.67333984375	3	529.337719	1584.99133	0.22653	0.00011991	1.4504	0.00076774	1.6769	0.00088765	529.3388314957059	60.827	1.8086	60.827	60.543	62.352	0					82	34	3	0	0	0	0.74191	3	23494	23494;23742;23991		0	0	1	52967000	+		29014	17481	18442	18537	27885;27886;27887	27885					0.22223283453081422
RYRRLQRRLIR	11	Unmodified	_RYRRLQRRLIR_					0	0	0			REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	530.0070190429688	3	529.337719	1584.99133	0.22653	0.00011991	1.4504	0.00076774	1.6769	0.00088765	529.3388314957059	60.827	1.8086	60.827	60.543	62.352	0					82	34	3	0	0	0	0.36631	1	23742	23742		0	0	1	52967000	+		29015	17481	18442	18537	27888	27888					0.22223283453081422
RYRRLQRRLIR	11	Unmodified	_RYRRLQRRLIR_					0	0	0			REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	REV__RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	794.0054321289062	2	793.502941	1584.99133	0.75199	0.0005967	0.26116	0.00020723	1.0131	0.00080394	793.5030276049322	60.865	2.5307	60.865	60.081	62.612	0					155	48	4	0	0	0	0.36631	1	24177	24177		0	0	1	95409000	+		29016	17481	18442	18537	27889	27889					0.22223283453081422
RYVDFHYLP	9	Unmodified	_RYVDFHYLP_					0	0	0			REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	REV__tr|U7SU17|U7SU17_FUSNUtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01065PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	605.3385009765625	2	605.306198	1208.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.757	1	43.383	42.883	43.883	-0.37433								0	0	0	0.76781	1	16096	16096		8.5933	1.8701	1		+		29017	17815	18443	18538	27890	27890					0.0018883422590079135
RYVRPFFLL	9	Unmodified	_RYVRPFFLL_					0	0	0			REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	MSMS	HCT116MG_D190212_S4	4	404.24310302734375	3	404.241359	1209.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.123	1	56.822	56.322	57.322	-0.3004								0	0	0	0.77008	1	21432	21432		0.26902	0	1		+		29018	15610	18444	18539	27891	27891					0.10578580773267277
RYWAISRPFRY	11	Unmodified	_RYWAISRPFRY_					0	0	0		ENSG00000169676|ENST00000304374|DRD5	ENSG00000169676|ENST00000304374|DRD5	ENSG00000169676|ENST00000304374|DRD5	MSMS	HCT116MG_D190212_S4	4	505.60675048828125	3	505.60536	1513.79425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.003	1	39.623	39.123	40.123	-0.37936								0	0	0	0.96121	1	14662	14662		0.45452	0.046251	1				29019	5085	18445	18540	27892	27892					0.057906391196183904
RYWIQLRRERK	11	Unmodified	_RYWIQLRRERK_					0	0	0			REV__ENSG00000115286|ENST00000233627|NDUFS7	REV__ENSG00000115286|ENST00000233627|NDUFS7	MSMS	HCT116MG_D190212_S1	1	802.4673461914062	2	802.468232	1602.92191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.558	1	45.558	45.058	46.058	0								0	0	0	0.96208	1	17264	17264		0	0	1		+		29020	10329	18446	18541	27893	27893					0.1445677971362329
RYYIIRTPKFR	11	Unmodified	_RYYIIRTPKFR_					0	0	0			REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	756.9437866210938	2	756.943528	1511.8725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.85	1	42.85	42.35	43.35	0								0	0	0	0.9598	1	16173	16173		1.1933	0	1		+		29021	9887	18447	18542	27894	27894					0.13704071704864873
RYYNELRRRYY	11	Unmodified	_RYYNELRRRYY_					0	0	0		DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant;DNAH6|p.S3773Lfs*5|1|0.09|ENSG00000115423|chr2:84796377-84796377|T/-|frameshift_variant;ENSG00000115423|ENST00000389394|DNAH6;DNAH6|p.R2682Kfs*27|1|0.42|ENSG00000115423|chr2:84701316-84701317|-/A|frameshift_variant	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	DNAH6|p.L3633*|2|0.38|ENSG00000115423|chr2:84784749-84784749|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	826.4249877929688	2	826.42623	1650.83791	0.84669	0.00069972	-1.3667	-0.0011294	-0.51998	-0.00042972	826.4249189237727	46.042	0.20555	45.941	45.812	46.017	-0.1014					7	3	3	0	0	0	0.36627	1	17546	17546		0.35063	0.35063	1	20285000			29022	706	18448	18543	27895	27895					0.03852203826136247
RYYQTDLVNI	10	Unmodified	_RYYQTDLVNI_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2;nc|ENSG00000137478|O94868-3|FCHSD2;FCHSD2|p.L287Cfs*26|1|0.21|ENSG00000137478|chr11:72902607-72902607|A/-|frameshift_variant	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MSMS	HCT116MG_D190212_S1	1	428.8912353515625	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7314	1	9.7314	9.2314	10.231	0								0	0	0	0.96836	1	2956	2956		0.62683	0.12087	1				29023	3480	18449	18544	27896	27896					0.020521672179029338
RYYYYHRQYRR	11	Unmodified	_RYYYYHRQYRR_					0	0	0		ENST00000565031.1_1_16:2009625-2011290:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	ENST00000565031.1_1_16:2009625-2011290:+|nuORF	MSMS	HCT116MG_D190212_S2	2	862.4349365234375	2	862.431847	1722.84914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.175	1	42.107	41.607	42.607	-0.068199								0	0	0	0.9619	1	15956	15956		0	0	1				29024	3698	18450	18545	27897	27897					0.016630259202429443
SAALSFEE	8	Unmodified	_SAALSFEE_					0	0	0			REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1	REV__tr|U7SV99|U7SV99_FUSNUDNApolymeraseIII,betasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01187PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	427.2016296386719	2	427.200533	852.386513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.614	1	58.331	57.831	58.831	-0.28305								0	0	0	0.8837	1	22035	22035		2.3027	0	1		+		29025	17841	18451	18546	27898	27898					-0.04558462535851504
SAANESEMLP	10	Unmodified	_SAANESEMLP_					0	0	0			REV__nc|ENSG00000103995|O94986-3|CEP152	REV__nc|ENSG00000103995|O94986-3|CEP152	MULTI-SECPEP	HCT116MG_D190212_S3	3	524.2334594726562	2	524.734414	1047.45428	0.33455	0.00017555	-0.14205	-7.4539E-05	0.1925	0.00010101	525.2355043721042	18.936	0.26026	19.005	18.875	19.135	0.069159					6	4	2	0	0	0	0.29442	1	6488	6488		14.838	2.5976	1	2364700	+		29026	10158	18452	18547	27899	27899					-0.06755380667368627
SAAPQRPAPV	10	Unmodified	_SAAPQRPAPV_					0	0	0			REV__LDLRAD3|p.Y293Tfs*20|2|0.4|ENSG00000179241|chr11:36229230-36229230|C/-|frameshift_variant	REV__LDLRAD3|p.Y293Tfs*20|2|0.4|ENSG00000179241|chr11:36229230-36229230|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	497.23419189453125	2	497.277441	992.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.994	1	42.619	42.119	43.119	-0.37493								0	0	0	0.92917	1	15823	15823		9.3831	2.0939	1		+		29027	16975	18453	18548	27900	27900					0.04375992020322883
SAASLGEAWF	10	Unmodified	_SAASLGEAWF_					0	0	0			REV__ENST00000541950.1_1_12:13215829-13232836:+|nuORF	REV__ENST00000541950.1_1_12:13215829-13232836:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.139404296875	2	519.748182	1037.48181	0.21928	0.00011397	-0.29856	-0.00015517	-0.079274	-4.1202E-05	520.2495470574872	40.044	0.20769	39.971	39.842	40.05	-0.072838					5	3	2	0	0	0	0.30856	1	15105	15105		0.35063	0	1	14834000	+		29028	10911	18454	18549	27901	27901					-0.03543109344809636
SAAYYHCWSVA	11	Unmodified	_SAAYYHCWSVA_					0	0	0			REV__ENST00000308659.12_1_2:111921804-111921999:+|nuORF	REV__ENST00000308659.12_1_2:111921804-111921999:+|nuORF	MSMS	HCT116MG_D190212_S3	3	629.2713623046875	2	629.271498	1256.52844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.007	1	15.091	14.591	15.591	0.083271								0	0	0	0.93717	1	4877	4877		13.042	0.80181	1		+		29029	14823	18455	18550	27902	27902					-0.08955992785195122
SADDKTVRL	9	Unmodified	_SADDKTVRL_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	HCT116MG_D190212_S2	2	502.7721252441406	2	502.772188	1003.52982	0.37921	0.00019066	-0.020229	-1.017E-05	0.35898	0.00018049	502.7721127682407	26.74	0.20886	26.388	26.241	26.45	-0.35254					5	3	2	0	0	0	0.068828	1	9709	9709		65.474	11.641	1	14533000			29030	949	18456	18551	27903	27903					0.028199645752465585
SADDKTVRL	9	Unmodified	_SADDKTVRL_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7723083496094	2	502.772188	1003.52982	0.51364	0.00025824	-0.093527	-4.7023E-05	0.42011	0.00021122	502.7721072259931	26.378	0.36473	26.229	25.994	26.359	-0.14924					9	6	2	0	0	0	0.011034	1	9483	9483		110.79	39.085	1	12770000			29031	949	18456	18551	27904	27904					0.028199645752465585
SADDKTVRL	9	Unmodified	_SADDKTVRL_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	HCT116MG_D190212_S4	4	502.77215576171875	2	502.772188	1003.52982	0.27271	0.00013711	-0.21994	-0.00011058	0.052775	2.6534E-05	502.7719992974177	26.716	0.20777	26.415	26.286	26.493	-0.30087					6	3	2	0	0	0	0.043159	1	9537	9537		78.06	16.459	1	5048000			29032	949	18456	18551	27905	27905					0.028199645752465585
SADDPQRL	8	Unmodified	_SADDPQRL_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	HCT116MG_D190212_S2	2	451.2224426269531	2	451.222331	900.430109	0.23739	0.00010711	-0.050055	-2.2586E-05	0.18733	8.4528E-05	451.2223024188417	23.865	0.31243	23.482	23.299	23.612	-0.38324					8	5	2	0	0	0	0.33298	1	8533	8533		56.177	23.872	1	15096000			29033	6353	18457	18552	27906	27906					-0.02408853038707548
SADDPQRL	8	Unmodified	_SADDPQRL_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	HCT116MG_D190212_S3	3	451.2223815917969	2	451.222331	900.430109	0.092548	4.176E-05	-0.042409	-1.9136E-05	0.050139	2.2624E-05	451.2222673887952	23.27	0.26052	23.23	23.083	23.343	-0.03968					9	4	3	0	0	0	0.19352	1	8227	8227		74.929	27.18	1	7573800			29034	6353	18457	18552	27907	27907					-0.02408853038707548
SADDPQRL	8	Unmodified	_SADDPQRL_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	HCT116MG_D190212_S4	4	451.2222595214844	2	451.222331	900.430109	0.24009	0.00010833	0.090205	4.0702E-05	0.33029	0.00014904	451.22236942877595	23.564	0.2081	23.316	23.22	23.428	-0.24775					5	3	2	0	0	0	0.557	1	8276	8276		36.127	1.7253	1	2968100			29035	6353	18457	18552	27908	27908					-0.02408853038707548
SADELVTRI	9	Unmodified	_SADELVTRI_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4;ENST00000490163.5_1_2:136511736-136527340:+|nuORF;UBXN4|p.T231Lfs*16|1|0.23|ENSG00000144224|chr2:135770600-135770600|A/-|frameshift_variant	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	HCT116MG_D190212_S3	3	502.27459716796875	2	502.274564	1002.53457	0.42332	0.00021262	-0.21408	-0.00010753	0.20924	0.0001051	502.2745131167695	41.19	0.26126	40.888	40.736	40.997	-0.30185					7	4	2	0	0	0	0.55223	1	15336	15336		13.906	3.0821	1	3314400			29036	3854	18458	18553	27909	27909					0.033408487179940494
SADEPMTTF	9	Unmodified	_SADEPMTTF_					0	0	0		ENST00000522397.5_1_8:54882915-54899537:-|nuORF;ENSG00000161980|ENST00000293860|POLR3K;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1;ENSG00000204219|ENST00000450454|TCEA3	ENST00000522397.5_1_8:54882915-54899537:-|nuORF	ENST00000522397.5_1_8:54882915-54899537:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	998.41455078125	1	998.413539	997.406262	0.15135	0.00015111	0.56826	0.00056736	0.71961	0.00071846	998.4141419074723	43.11	0.20581	43.037	42.943	43.149	-0.073372					5	3	2	0	0	0	0.0051486	1	16361	16361		136.33	94.239	1	18042000			29037	4503	18459	18554	27910	27910					-0.09254454587392047
SADEPMTTF	9	Unmodified	_SADEPMTTF_					0	0	0		ENST00000522397.5_1_8:54882915-54899537:-|nuORF;ENSG00000161980|ENST00000293860|POLR3K;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1;ENSG00000204219|ENST00000450454|TCEA3	ENST00000522397.5_1_8:54882915-54899537:-|nuORF	ENST00000522397.5_1_8:54882915-54899537:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	998.4151000976562	1	998.413539	997.406262	0.60832	0.00060736	0.35867	0.0003581	0.96699	0.00096546	998.414010976764	43.419	0.34821	43.114	42.945	43.293	-0.30481					11	6	3	0	0	0	0.0060607	1	16226	16226		128.37	88.408	1	11768000			29038	4503	18459	18554	27911	27911					-0.09254454587392047
SADEPMTTF	9	Unmodified	_SADEPMTTF_					0	0	0		ENST00000522397.5_1_8:54882915-54899537:-|nuORF;ENSG00000161980|ENST00000293860|POLR3K;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1;ENSG00000204219|ENST00000450454|TCEA3	ENST00000522397.5_1_8:54882915-54899537:-|nuORF	ENST00000522397.5_1_8:54882915-54899537:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	998.4129028320312	1	998.413539	997.406262	0.58426	0.00058334	-0.16281	-0.00016256	0.42145	0.00042078	998.4134362228901	43.512	0.19739	43.138	43.018	43.215	-0.37433					8	4	2	0	0	0	0.0046012	1	15980	15980		141.83	97.42	1	4459000			29039	4503	18459	18554	27912	27912					-0.09254454587392047
SADEVQRF	8	Unmodified	_SADEVQRF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	HCT116MG_D190212_S3	3	476.2301330566406	2	476.230156	950.445759	0.34391	0.00016378	0.21317	0.00010152	0.55709	0.0002653	476.2302955279429	29.45	0.26071	29.213	29.083	29.344	-0.23655					8	4	2	0	0	0	0.14283	1	10719	10719		85.272	45.322	1	3463800			29040	5046	18460	18555	27913	27913					-0.031445665216665475
SADEVQRF	8	Unmodified	_SADEVQRF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	476.230156	950.445759	0.47491	0.00022617	-4.5726	-0.0021776	-4.0977	-0.0019514	476.2282549742334	29.629	0.46798	29.279	29.189	29.657	-0.34921	0.033053	-0.0044712	NaN	85.272	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2265100			29041	5046	18460	18555							-0.031445665216665475
SADFPALVV	9	Unmodified	_SADFPALVV_					0	0	0		GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant;ENSG00000159131|ENST00000381815|GART;nc|ENSG00000159131|P22102-2|GART;ENST00000488791.1_1_21:34904635-34906961:-|nuORF;ENST00000497313.5_1_21:34903034-34906961:-|nuORF;ENST00000476524.1_1_21:34903719-34911621:-|nuORF	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	918.494140625	1	918.49311	917.485833	0.82692	0.00075952	0.40784	0.0003746	1.2348	0.0011341	918.4932867320879	56.52	0.21037	56.338	56.207	56.418	-0.18261					7	3	3	0	0	0	0.2853	1	21840	21840		32.305	10.559	1	18771000			29042	4398	18461	18556	27914	27914					0.023789801489101592
SADFPALVV	9	Unmodified	_SADFPALVV_					0	0	0		GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant;ENSG00000159131|ENST00000381815|GART;nc|ENSG00000159131|P22102-2|GART;ENST00000488791.1_1_21:34904635-34906961:-|nuORF;ENST00000497313.5_1_21:34903034-34906961:-|nuORF;ENST00000476524.1_1_21:34903719-34911621:-|nuORF	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	918.4970092773438	1	918.49311	917.485833	0.8962	0.00082316	1.1653	0.0010704	2.0615	0.0018935	918.4940813414751	56.617	0.36667	56.333	56.045	56.412	-0.28367					10	6	2	0	0	0	0.2853	1	21473	21473		32.305	17.724	1	5476500			29043	4398	18461	18556	27915	27915					0.023789801489101592
SADGIVRI	8	Unmodified	_SADGIVRI_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MSMS	HCT116MG_D190212_S3	3	415.74005126953125	2	415.74016	829.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.105	1	38.804	38.304	39.304	-0.30137								0	0	0	0.33717	1	14508	14508		52.268	2.3353	1				29044	1454	18462	18557	27916	27916					0.044212292089468974
SADKTVKL	8	Unmodified	_SADKTVKL_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	HCT116MG_D190212_S2	2	431.2555236816406	2	431.255643	860.496732	0.10012	4.3179E-05	-0.066482	-2.8671E-05	0.033643	1.4509E-05	431.25552960730874	24.593	0.26128	24.213	24.082	24.344	-0.38003					7	4	2	0	0	0	0.077918	1	8841	8841		100.09	18.201	1	19800000			29045	3458	18463	18558	27917	27917					0.06090382523200333
SADKTVKL	8	Unmodified	_SADKTVKL_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	HCT116MG_D190212_S3	3	431.2554626464844	2	431.255643	860.496732	0.085889	3.704E-05	0.30027	0.00012949	0.38615	0.00016653	431.25569277153767	23.832	0.26065	23.771	23.634	23.895	-0.061447					9	4	3	0	0	0	0.20984	1	8445	8445		71.708	9.1352	1	3479600			29046	3458	18463	18558	27918	27918					0.06090382523200333
SADKYVKI	8	Unmodified	_SADKYVKI_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	HCT116MG_D190212_S3	3	462.26336669921875	2	462.263468	922.512382	0.54826	0.00025344	-0.47892	-0.00022139	0.069341	3.2054E-05	462.26334407368927	28.877	0.31241	28.655	28.473	28.786	-0.22195					7	5	2	0	0	0	0.59507	1	10500	10500		32.786	0.4802	1	3981900			29047	3390	18464	18559	27919	27919					0.04802669040236651
SADNPSHAY	9	Unmodified	_SADNPSHAY_					0	0	0		ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	MULTI-MSMS	HCT116MG_D190212_S1	1	481.2040710449219	2	481.204138	960.393724	0.040529	1.9503E-05	0.50586	0.00024342	0.54639	0.00026293	481.20418532221885	19.313	0.26016	19.313	19.131	19.391	0					7	4	2	0	0	0	0.39784	1	6718	6718		22.736	12.662	1	2348100			29048	4519	18465	18560	27920	27920					-0.08805729935431827
SADPDNLKY	9	Unmodified	_SADPDNLKY_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	511.7433166503906	2	511.743096	1021.47164	0.55055	0.00028174	0.083595	4.2779E-05	0.63414	0.00032452	511.74291614258726	29.31	0.2083	29.31	29.216	29.425	0					6	3	2	0	0	0	0.30874	1	10741	10741		29.841	13.691	1	5144500			29049	4314	18466	18561	27921	27921					-0.03823717070042676
SADPDNLKY	9	Unmodified	_SADPDNLKY_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	511.7432556152344	2	511.743096	1021.47164	0.52235	0.00026731	0.17318	8.8621E-05	0.69553	0.00035593	511.74292723579964	29.667	0.51669	29.366	29.134	29.65	-0.30095					13	9	3	0	0	0	0.0068427	1	10885	10885		121.53	81.577	1	63472000			29050	4314	18466	18561	27922	27922					-0.03823717070042676
SADPDNLKY	9	Unmodified	_SADPDNLKY_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	511.74334716796875	2	511.743096	1021.47164	0.33513	0.0001715	0.44299	0.0002267	0.77812	0.0003982	511.74314213907684	29.786	0.37216	29.549	29.396	29.768	-0.23655					11	6	3	0	0	0	0.040027	1	10847	10847		79.596	46.811	1	16297000			29051	4314	18466	18561	27923	27923					-0.03823717070042676
SADPDNLKY	9	Unmodified	_SADPDNLKY_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	511.7431945800781	2	511.743096	1021.47164	0.18122	9.2738E-05	-0.057762	-2.9559E-05	0.12346	6.3178E-05	511.7430775090322	29.924	0.31191	29.566	29.389	29.701	-0.3571					9	5	3	0	0	0	0.16285	1	10832	10832		45.74	19.472	1	3910500			29052	4314	18466	18561	27924	27924					-0.03823717070042676
SADPGHPH	8	Unmodified	_SADPGHPH_					0	0	0			REV__FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant	REV__FERMT3|p.R510Pfs*105|1|0.28|ENSG00000149781|chr11:64220634-64220635|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	409.1827392578125	2	409.183009	816.351465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.308	1	30.024	29.524	30.524	-0.28453								0	0	0	0.8837	1	11137	11137		14.582	0	1		+		29053	12573	18467	18562	27925	27925					-0.06405660553150483
SADPGNLKY	9	Unmodified	_SADPGNLKY_					0	0	0		ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	482.7406005859375	2	482.740357	963.46616	0.40454	0.00019529	-0.0068883	-3.3253E-06	0.39765	0.00019196	482.74030448247703	29.086	0.26123	29.086	28.955	29.216	0					7	4	2	0	0	0	0.066823	1	10640	10640		66.457	24.617	1	11407000			29054	8566	18468	18563	27926	27926					-0.017033958618526412
SADPGNLKY	9	Unmodified	_SADPGNLKY_					0	0	0		ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7406921386719	2	482.740357	963.46616	0.41803	0.0002018	-0.098369	-4.7487E-05	0.31966	0.00015431	482.74026410642443	29.46	0.36087	29.159	28.979	29.34	-0.30095					10	6	2	0	0	0	0.0067688	1	10791	10791		122.18	56.944	1	56921000			29055	8566	18468	18563	27927	27927					-0.017033958618526412
SADPGNLKY	9	Unmodified	_SADPGNLKY_					0	0	0		ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	482.74053955078125	2	482.740357	963.46616	0.33193	0.00016023	0.01556	7.5114E-06	0.34749	0.00016775	482.7403072140398	29.502	0.99926	29.266	29.031	30.03	-0.23655					29	18	2	0	0	0	0.0067688	1	10722	10722		122.18	58.219	1	34097000			29056	8566	18468	18563	27928	27928					-0.017033958618526412
SADPGNLKY	9	Unmodified	_SADPGNLKY_					0	0	0		ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	ENST00000522841.6_1_16:21481075-21531198:-|nuORF	MSMS	HCT116MG_D190212_S4	4	482.7403564453125	2	482.740357	963.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.633	1	29.284	28.784	29.784	-0.34921								0	0	0	0.017042	1	10709	10709		96.111	42.278	1				29057	8566	18468	18563	27929	27929					-0.017033958618526412
SADQKTTLL	9	Unmodified	_SADQKTTLL_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	HCT116MG_D190212_S3	3	488.76947021484375	2	488.769114	975.523675	0.038596	1.8864E-05	0.95723	0.00046786	0.99582	0.00048673	488.76933090755523	34.452	0.25936	34.157	34.079	34.339	-0.29419					5	4	2	0	0	0	0.12421	1	12715	12715		53.404	3.471	1	2576600			29058	3644	18469	18564	27930	27930					0.034934463437252816
SADQKTTLL	9	Unmodified	_SADQKTTLL_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	488.769114	975.523675	0.038596	1.8864E-05	0.95723	0.00046786	0.99582	0.00048673	488.76933090755523	34.452	0.25936	34.157	34.079	34.339	-0.29419	0	0	NaN	53.404	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2576600			29059	3644	18469	18564							0.034934463437252816
SADSEPHKY	9	Unmodified	_SADSEPHKY_					0	0	0		nc|ENSG00000141956|P57071|PRDM15;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15	nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071|PRDM15	MSMS	HCT116MG_D190212_S1	1	517.233154296875	2	517.232896	1032.45124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.071	1	16.071	15.571	16.571	0								0	0	0	0.76077	1	5384	5384		16.149	2.6412	1				29060	9482	18470	18565	27931	27931					-0.06368887729854578
SAEALTIQQY	10	Unmodified	_SAEALTIQQY_					0	0	0		ENST00000416764.5_1_3:185686359-185693154:+|nuORF;ENST00000306399.3_1_3:185686359-185697623:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	562.28515625	2	562.285128	1122.5557	0.15798	8.8829E-05	0.26579	0.00014945	0.42376	0.00023828	562.2852069424033	37.232	0.2509	36.849	36.726	36.977	-0.3839					7	4	2	0	0	0	0.58749	1	13660	13660		29.082	2.8134	1	5949500			29061	7028	18471	18566	27932	27932					-0.0006718597312556085
SAEEGGGY	8	Unmodified	_SAEEGGGY_					0	0	0			REV__ENSG00000171403|ENST00000246662|KRT9	REV__ENSG00000171403|ENST00000246662|KRT9	MSMS	HCT116MG_D190212_S4	4	385.1531677246094	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.289	1	14.128	13.628	14.628	-0.16089								0	0	0	0.8837	1	4515	4515		0.79363	0	1		+	+	29062	10259	18472	18567	27933	27933					-0.1008018163813631
SAELIVLGEP	10	Unmodified	_SAELIVLGEP_					0	0	0			REV__nc|ENSG00000187045|Q8IU80-2|TMPRSS6	REV__nc|ENSG00000187045|Q8IU80-2|TMPRSS6	MSMS	HCT116MG_D190212_S3	3	514.287353515625	2	514.28714	1026.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.937	1	26.767	26.267	27.267	-0.16933								0	0	0	0.89062	1	9686	9686		17.113	0	1		+		29063	13911	18473	18568	27934	27934					0.04750903520562133
SAESLIDKL	9	Unmodified	_SAESLIDKL_					0	0	0			REV__nc|ENSG00000169083|P10275-3|AR	REV__nc|ENSG00000169083|P10275-3|AR	MSMS	HCT116MG_D190212_S3	3	488.2711181640625	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.18	1	35.879	35.379	36.379	-0.30042								0	0	0	0.32965	1	13359	13359		37.974	0	1		+		29064	13221	18474	18569	27935	27935					0.040143304864727725
SAFGEGAPG	9	Unmodified	_SAFGEGAPG_					0	0	0		ENST00000301031.8_1_16:89736278-89736800:+|nuORF	ENST00000301031.8_1_16:89736278-89736800:+|nuORF	ENST00000301031.8_1_16:89736278-89736800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	792.3526611328125	1	792.352259	791.344983	0.61714	0.00048899	-0.37937	-0.00030059	0.23777	0.0001884	792.3519141131171	20.306	0.7812	20.354	19.843	20.624	0.048107					20	14	2	0	0	0	0.24973	1	6978	6978		36.044	0	1	3395300			29065	6997	18475	18570	27936	27936					-0.05903598504517049
SAFGEGAPG	9	Unmodified	_SAFGEGAPG_					0	0	0		ENST00000301031.8_1_16:89736278-89736800:+|nuORF	ENST00000301031.8_1_16:89736278-89736800:+|nuORF	ENST00000301031.8_1_16:89736278-89736800:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	792.352259	791.344983	0.90401	0.00071629	-0.71039	-0.00056288	0.19362	0.00015342	792.3516183621157	20.25	0.83174	20.049	19.625	20.456	-0.20133	-0.15234	-0.00015763	NaN	36.044	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2395600			29066	6997	18475	18570							-0.05903598504517049
SAGCGGGG	8	Unmodified	_SAGCGGGG_					0	0	0		ENSG00000122691|ENST00000242261|TWIST1	ENSG00000122691|ENST00000242261|TWIST1	ENSG00000122691|ENST00000242261|TWIST1	MULTI-MSMS	HCT116MG_D190212_S1	1	565.2025756835938	1	565.203486	564.19621	0.35841	0.00020257	-0.47751	-0.00026989	-0.1191	-6.7318E-05	565.2030042696358	47.295	0.22342	47.295	47.217	47.441	0					7	4	2	0	0	0	0.87635	1	17983	17983		0.69038	0	1	21306000			29067	2778	18476	18571	27937	27937					-0.10332027679066869
SAGCVKGP	8	Unmodified	_SAGCVKGP_					0	0	0			REV__nc|ENSG00000233237|Q9H8W2|LINC00472	REV__nc|ENSG00000233237|Q9H8W2|LINC00472	MSMS	HCT116MG_D190212_S1	1	359.67999267578125	2	359.681256	717.34796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.153	1	28.153	27.653	28.653	0								0	0	0	0.8837	1	10245	10245		5.2307	2.3415	1		+		29068	15557	18477	18572	27938	27938					-0.022020466513595238
SAGIHETTYN	10	Unmodified	_SAGIHETTYN_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MSMS	HCT116MG_D190212_S3	3	546.7510375976562	2	546.751453	1091.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.776	1	21.788	21.288	22.288	0.01104								0	0	0	0.030258	1	7605	7605		118.07	68.135	1				29069	3824	18478	18573	27939	27939					-0.05373216184102603
SAGIHETTYN	10	Unmodified	_SAGIHETTYN_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MULTI-MSMS	HCT116MG_D190212_S4	4	546.751953125	2	546.751453	1091.48835	0.5534	0.00030257	-0.080561	-4.4047E-05	0.47284	0.00025853	546.7516417586871	22.034	0.2597	21.806	21.676	21.936	-0.22777					7	4	2	0	0	0	0.042655	1	7649	7649		92.653	59.868	1	5247000			29070	3824	18478	18573	27940	27940					-0.05373216184102603
SAGNEPPSGP	10	Unmodified	_SAGNEPPSGP_					0	0	0			REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	456.7303771972656	2	456.706514	911.398475	0.048661	2.2224E-05	0.85861	0.00039213	0.90727	0.00041436	456.7068863792794	17.256	0.67638	17.341	16.964	17.641	0.084467					21	12	2	0	0	0	0.37752	2	5822	5822;5864		43.772	10.987	1	3036100	+		29071	11422	18479	18574	27941;27942	27941					-0.060768457926542396
SAGNEPPSGP	10	Unmodified	_SAGNEPPSGP_					0	0	0			REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	457.24078369140625	2	456.706514	911.398475	0.048661	2.2224E-05	0.85861	0.00039213	0.90727	0.00041436	456.7068863792794	17.256	0.67638	17.341	16.964	17.641	0.084467					21	12	2	0	0	0	0.18019	1	5844	5844		63.961	5.2817	1	3036100	+		29072	11422	18479	18574	27943	27943					-0.060768457926542396
SAGPPHVV	8	Unmodified	_SAGPPHVV_					0	0	0			REV__ENST00000506649.5_1_6:109702953-109703094:-|nuORF	REV__ENST00000506649.5_1_6:109702953-109703094:-|nuORF	MSMS	HCT116MG_D190212_S2	2	382.2068786621094	2	382.208495	762.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.726	1	62.597	62.097	63.097	-0.12924								0	0	0	0.8837	1	24316	24316		0.79363	0	1		+		29073	16151	18480	18575	27944	27944					0.011732884917137198
SAHRRFLLF	9	Unmodified	_SAHRRFLLF_					0	0	0		ENST00000491169.1_1_1:207070885-207076401:+|nuORF;nc|ENSG00000162892|Q13007-3|IL24;ENST00000367095.7_1_1:207071131-207076401:+|nuORF;ENSG00000162892|ENST00000294984|IL24;nc|ENSG00000162892|Q13007-2|IL24	ENST00000491169.1_1_1:207070885-207076401:+|nuORF	ENST00000491169.1_1_1:207070885-207076401:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	382.8895263671875	3	382.889209	1145.6458	0.2385	9.1318E-05	0.64091	0.0002454	0.87941	0.00033672	382.8892839122067	47.845	0.3093	47.713	47.532	47.841	-0.13281					10	5	3	0	0	0	0.35128	1	18269	18269		18.373	6.1324	1	38505000			29074	4565	18481	18576	27945	27945					0.0787995293660515
SAHRRFLLF	9	Unmodified	_SAHRRFLLF_					0	0	0		ENST00000491169.1_1_1:207070885-207076401:+|nuORF;nc|ENSG00000162892|Q13007-3|IL24;ENST00000367095.7_1_1:207071131-207076401:+|nuORF;ENSG00000162892|ENST00000294984|IL24;nc|ENSG00000162892|Q13007-2|IL24	ENST00000491169.1_1_1:207070885-207076401:+|nuORF	ENST00000491169.1_1_1:207070885-207076401:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	382.8891296386719	3	382.889209	1145.6458	-0.11833	-4.5306E-05	0.38419	0.0001471	0.26586	0.00010179	383.223619075397	48.117	0.26092	47.801	47.671	47.932	-0.31596					6	4	2	0	0	0	0.45867	2	18106	18106;18115		13.615	5.4593	1	5113600			29075	4565	18481	18576	27946;27947	27946					0.0787995293660515
SAIGGEVPQRY	11	Unmodified	_SAIGGEVPQRY_					0	0	0		ENST00000464590.1_1_11:3844931-3845577:+|nuORF;ENST00000478773.5_1_11:3829798-3845998:+|nuORF;ENST00000532017.5_1_11:3832520-3846091:+|nuORF;nc|ENSG00000148985|Q9UHJ9-4|PGAP2;nc|ENSG00000148985|Q9UHJ9-3|PGAP2;nc|ENSG00000148985|Q9UHJ9|PGAP2;nc|ENSG00000148985|Q9UHJ9-5|PGAP2;ENSG00000148985|ENST00000278243|PGAP2	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	588.804931640625	2	588.80402	1175.59349	0.47613	0.00028035	0.63366	0.0003731	1.1098	0.00065345	588.8040479795213	31.392	0.41774	31.121	30.908	31.326	-0.27028					14	7	3	0	0	0	0.69138	1	11479	11479		24.991	2.3329	1	5720600			29076	4039	18482	18577	27948	27948					0.012713250123397302
SAIVTYMAP	9	Unmodified	_SAIVTYMAP_					0	0	0		ENSG00000221938|ENST00000641068|OR2A14	ENSG00000221938|ENST00000641068|OR2A14	ENSG00000221938|ENST00000641068|OR2A14	MULTI-SECPEP	HCT116MG_D190212_S3	3	476.3066101074219	2	476.744053	951.473554	0.23388	0.0001115	0.0058347	2.7817E-06	0.23972	0.00011428	476.74401450176924	36.994	0.7282	36.693	36.457	37.185	-0.30113					20	13	2	0	0	0	0.2622	1	13856	13856		4.756	0	1	2604400			29077	6472	18483	18578	27949	27949					-0.004123795857822188
SALTRRHHC	9	Unmodified	_SALTRRHHC_					0	0	0		ENSG00000166289|ENST00000436066|PLEKHF1	ENSG00000166289|ENST00000436066|PLEKHF1	ENSG00000166289|ENST00000436066|PLEKHF1	MSMS	HCT116MG_D190212_S1	1	360.85418701171875	3	360.85417	1079.54068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.568	1	10.568	10.068	11.068	0								0	0	0	0.77008	1	3252	3252		0.26902	0	1				29078	4837	18484	18579	27950	27950					0.004090884685410856
SALVQNVTA	9	Unmodified	_SALVQNVTA_					0	0	0			REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant	REV__PDIA6|p.Y316Ffs*2|1|0.07|ENSG00000143870|chr2:10788738-10788750|AACTTCCAGATAA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	451.7511291503906	2	451.750724	901.486896	0.1069	4.829E-05	0.48968	0.00022121	0.59658	0.0002695	451.7510159006615	23.253	0.31272	23.213	23.083	23.396	-0.03968					10	5	3	0	0	0	0.24895	1	8226	8226		36.127	3.8215	1	6919000	+		29079	12407	18485	18580	27951	27951					0.032211945178119095
SALVVEGIY	9	Unmodified	_SALVVEGIY_					0	0	0			REV__ENSG00000255154|ENST00000461393|HTD2	REV__ENSG00000255154|ENST00000461393|HTD2	MULTI-SECPEP	HCT116MG_D190212_S3	3	476.3065490722656	2	475.7633	949.512048	0.15097	7.1827E-05	2.1983	0.0010459	2.3493	0.0011177	475.7635939337576	38.976	0.31179	38.675	38.456	38.768	-0.30137					7	5	2	0	0	0	0.25723	1	14484	14484		12.532	3.9383	1	3531500	+		29080	14393	18486	18581	27952	27952					0.035272493203933664
SALVVEGIY	9	Unmodified	_SALVVEGIY_					0	0	0			REV__ENSG00000255154|ENST00000461393|HTD2	REV__ENSG00000255154|ENST00000461393|HTD2	MULTI-MATCH	HCT116MG_D190212_S4	4		2	475.7633	949.512048	0.47356	0.0002253	2.4216	0.0011521	2.8952	0.0013774	475.764112812293	39.127	0.13162	38.747	38.641	38.773	-0.38055	0.036091	2.59E-05	NaN	12.532	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2084800	+		29081	14393	18486	18581							0.035272493203933664
SANFNPLI	8	Unmodified	_SANFNPLI_					0	0	0			REV__ENST00000472061.1_1_7:99754715-99755074:-|nuORF	REV__ENST00000472061.1_1_7:99754715-99755074:-|nuORF	MSMS	HCT116MG_D190212_S3	3	438.2336730957031	2	438.23471	874.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.245	1	28.039	27.539	28.539	-0.20593								0	0	0	0.8837	1	10214	10214		13.508	0	1		+		29082	12493	18487	18582	27953	27953					0.012618268346614059
SANNQLLVNI	10	Unmodified	_SANNQLLVNI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MSMS	HCT116MG_D190212_S4	4	543.301513671875	2	543.301113	1084.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.255	1	38.874	38.374	39.374	-0.38055								0	0	0	0.95776	1	14416	14416		2.9952	0.69251	1		+		29083	9934	18488	18583	27954	27954					0.048762265006644157
SAPDQNAT	8	Unmodified	_SAPDQNAT_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MSMS	HCT116MG_D190212_S3	3	402.1788635253906	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.855	1	62.631	62.131	63.131	-0.22315								0	0	0	0.8837	1	24010	24010		0.69038	0	1		+		29084	11375	18489	18584	27955	27955					-0.06336803855481321
SAPSFAGA	8	Unmodified	_SAPSFAGA_					0	0	0			REV__ENSG00000004142|ENST00000540200|POLDIP2	REV__ENSG00000004142|ENST00000540200|POLDIP2	MULTI-MSMS	HCT116MG_D190212_S2	2	707.3359985351562	1	707.335881	706.328604	0.98479	0.00069658	-0.33831	-0.0002393	0.64648	0.00045728	707.3355953672474	40.924	0.36247	40.855	40.673	41.036	-0.069626					9	6	2	0	0	0	0.53394	1	15459	15459		38.151	0	1	18230000	+		29085	10466	18490	18585	27956	27956					-0.036306796706185196
SAQIPRLVTL	10	Unmodified	_SAQIPRLVTL_					0	0	0			REV__ENST00000475306.1_1_1:24410803-24434643:-|nuORF	REV__ENST00000475306.1_1_1:24410803-24434643:-|nuORF	MSMS	HCT116MG_D190212_S4	4	549.777587890625	2	549.337498	1096.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.01	1	42.635	42.135	43.135	-0.37493								0	0	0	0.94551	1	15829	15829		5.7319	0	1		+		29086	15904	18491	18586	27957	27957					0.11597980294095578
SAQWPHKGAT	10	Unmodified	_SAQWPHKGAT_					0	0	0			REV__nc|ENSG00000148702|Q14520-2|HABP2	REV__nc|ENSG00000148702|Q14520-2|HABP2	MSMS	HCT116MG_D190212_S3	3	361.5168151855469	3	361.51744	1081.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.686	1	21.705	21.205	22.205	0.018446								0	0	0	0.9356	1	7569	7569		7.9454	1.2222	1		+		29087	12553	18492	18587	27958	27958					-0.007011959850387939
SARAGCHA	8	Unmodified	_SARAGCHA_					0	0	0			REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-MSMS	HCT116MG_D190212_S2	2	772.3511962890625	1	772.351882	771.344606	1.0766	0.00083155	-0.93841	-0.00072478	0.13824	0.00010677	772.3509404078453	48.76	0.25397	48.616	48.439	48.693	-0.1437					8	4	2	0	0	0	0.85329	1	18622	18622		4.756	0.42677	1	80448000	+		29088	10916	18493	18588	27959	27959					-0.0502129670536533
SARAGCHA	8	Unmodified	_SARAGCHA_					0	0	0			REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-MSMS	HCT116MG_D190212_S3	3	772.3513793945312	1	772.351882	771.344606	0.84678	0.00065401	-1.0399	-0.00080318	-0.19313	-0.00014917	772.3509709313535	48.947	0.31429	48.631	48.449	48.763	-0.31596					8	5	2	0	0	0	0.82475	1	18424	18424		8.5933	0.68312	1	6145300	+		29089	10916	18493	18588	27960	27960					-0.0502129670536533
SARAGCHA	8	Unmodified	_SARAGCHA_					0	0	0			REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	772.351882	771.344606	1.0766	0.00083155	-0.93841	-0.00072478	0.13824	0.00010677	772.3509404078453	48.76	0.25397	48.616	48.439	48.693	-0.1437	-0.007539	4.7966E-05	NaN	8.5933	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80448000	+		29090	10916	18493	18588							-0.0502129670536533
SARLPLPPRLR	11	Unmodified	_SARLPLPPRLR_					0	0	0		ENST00000482899.1_1_7:150737010-150738273:+|nuORF	ENST00000482899.1_1_7:150737010-150738273:+|nuORF	ENST00000482899.1_1_7:150737010-150738273:+|nuORF	MSMS	HCT116MG_D190212_S1	1	638.40380859375	2	638.404038	1274.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.163	1	62.163	61.663	62.663	0								0	0	0	0.96163	1	23999	23999		0.23584	0	1				29091	8267	18494	18589	27961	27961					0.16711844470569304
SARTHSTAAAP	11	Unmodified	_SARTHSTAAAP_					0	0	0		ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant	ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant	ZNF335|p.A1303Gfs*39|1|0.35|ENSG00000198026|chr20:45949073-45949074|AG/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	535.6287231445312	2	535.272887	1068.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.128	1	21.128	20.628	21.628	0								0	0	0	0.92983	1	7418	7418		16.149	5.3252	1				29092	18726	18495	18590	27962	27962					-0.0003040133601643902
SASAPSHCSGP	11	Unmodified	_SASAPSHCSGP_					0	0	0			REV__nc|ENSG00000110497|Q9C0C7-5|AMBRA1	REV__nc|ENSG00000110497|Q9C0C7-5|AMBRA1	MULTI-SECPEP	HCT116MG_D190212_S4	4	500.2711181640625	2	500.711273	999.407994	0.049966	2.5018E-05	0.051412	2.5743E-05	0.10138	5.0761E-05	500.71125734823903	17.458	0.36359	17.287	17.069	17.433	-0.17046					10	6	2	0	0	0	0.36183	1	5712	5712		9.3831	0	1	1545400	+		29093	17106	18496	18591	27963	27963					-0.09173400778786345
SASIPTALLIL	11	Unmodified	_SASIPTALLIL_					0	0	0		DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant	DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant	DHDDS|p.V173Wfs*31|1|0.34|ENSG00000117682|chr1:26447630-26447630|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	550.3438720703125	2	549.842082	1097.66961	0.58433	0.00032129	4.1504	0.002282	4.7347	0.0026033	549.8452457330447	34.687	0.67577	34.687	34.337	35.013	0					18	12	2	0	0	0	0.72373	1	12922	12922		13.042	0	1	28153000			29094	667	18497	18592	27964	27964					0.12468328859768008
SATFKSFEDR	10	Unmodified	_SATFKSFEDR_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-MSMS	HCT116MG_D190212_S2	2	594.2897338867188	2	594.288202	1186.56185	0.52101	0.00030963	0.22136	0.00013155	0.74237	0.00044118	594.2883118806849	38.381	0.73013	38.288	37.753	38.483	-0.093006					24	13	2	0	0	0	0.72406	1	14323	14323		18.373	0.93045	1	30185000			29095	1753	18498	18593	27965	27965					-0.023966677416183302
SATFKSFEDR	10	Unmodified	_SATFKSFEDR_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-MSMS	HCT116MG_D190212_S3	3	594.2881469726562	2	594.288202	1186.56185	0.52791	0.00031373	-0.005221	-3.1028E-06	0.52268	0.00031063	594.2881440159375	38.507	1.056	38.206	37.66	38.716	-0.30137					48	20	3	0	0	0	0.76143	1	14116	14116		15.248	0.8431	1	43759000			29096	1753	18498	18593	27966	27966					-0.023966677416183302
SATFKSFEDR	10	Unmodified	_SATFKSFEDR_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-MSMS	HCT116MG_D190212_S3	3	1187.5692138671875	1	1187.56913	1186.56185	0.46126	0.00054777	0.03233	3.8394E-05	0.49359	0.00058617	1187.5691302852579	38.575	0.67517	38.274	37.833	38.508	-0.30137					28	12	3	0	0	0	0.55624	1	14204	14204		31.268	10.854	1	6193800			29097	1753	18498	18593	27967	27967					-0.023966677416183302
SATFKSFEDR	10	Unmodified	_SATFKSFEDR_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-MSMS	HCT116MG_D190212_S4	4	594.369873046875	2	594.288202	1186.56185	0.764	0.00045403	-0.20902	-0.00012422	0.55498	0.00032982	594.2880192825822	38.58	1.0055	38.198	37.634	38.64	-0.38163					59	21	4	0	0	0	0.6277	2	14086	14086;14190		26.268	3.6101	1	39463000			29098	1753	18498	18593	27968;27969	27968					-0.023966677416183302
SATFKSFEDR	10	Unmodified	_SATFKSFEDR_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1187.56913	1186.56185	0.38793	0.00046069	0.020108	2.388E-05	0.40804	0.00048457	1187.5693839094731	38.366	0.52018	38.273	37.908	38.428	-0.09301	0.0050196	-4.5427E-05	NaN	31.268	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11894000			29099	1753	18498	18593							-0.023966677416183302
SATPGVHGQP	10	Unmodified	_SATPGVHGQP_					0	0	0		ENST00000546361.6_1_19:16628883-16629183:-|nuORF	ENST00000546361.6_1_19:16628883-16629183:-|nuORF	ENST00000546361.6_1_19:16628883-16629183:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	475.7383117675781	2	475.738148	949.461744	0.29647	0.00014104	-1.1827	-0.00056267	-0.88627	-0.00042163	475.7381702159848	18.206	1.9177	18.031	16.599	18.517	-0.17501					47	36	2	0	0	0	0.60826	1	6189	6189		27.629	1.3607	1	2122400			29100	8726	18499	18594	27970	27970					-0.015008602847615293
SATPPGPPPA	10	Unmodified	_SATPPGPPPA_					0	0	0			REV__ENSG00000186564|ENST00000334793|FOXD2	REV__ENSG00000186564|ENST00000334793|FOXD2	MULTI-MSMS	HCT116MG_D190212_S4	4	446.2320861816406	2	446.232168	890.449782	0.25564	0.00011407	-0.35283	-0.00015744	-0.097192	-4.337E-05	446.23180041801294	30.051	0.67611	29.694	29.181	29.857	-0.35711					15	12	2	0	0	0	0.56527	1	10882	10882		30.637	10.183	1	2175500	+		29101	13889	18500	18595	27971	27971					0.00017522972052574914
SATRKGIV	8	Unmodified	_SATRKGIV_					0	0	0		ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172352|ENST00000382407|CDY1B;ENSG00000172288|ENST00000306609|CDY1	ENSG00000182415|ENST00000250838|CDY2A	ENSG00000182415|ENST00000250838|CDY2A	MSMS	HCT116MG_D190212_S4	4	416.25677490234375	2	416.255977	830.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.03	1	46.66	46.16	47.16	-0.37038								0	0	0	0.8837	1	17383	17383		2.3027	0	1				29102	3046	18501	18596	27972	27972					0.07537221962911644
SATTTLENY	9	Unmodified	_SATTTLENY_					0	0	0		ENSG00000237693|ENST00000522154|IRGM;nc|ENSG00000237693|A1A4Y4-3|IRGM;nc|ENSG00000237693|A1A4Y4-4|IRGM;nc|ENSG00000237693|A1A4Y4-2|IRGM	ENSG00000237693|ENST00000522154|IRGM	ENSG00000237693|ENST00000522154|IRGM	MSMS	HCT116MG_D190212_S4	4	500.71319580078125	2	500.235104	998.455655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.631	1	22.394	21.894	22.894	-0.23758								0	0	0	0.74436	1	7883	7883		16.942	0	1				29103	6531	18502	18597	27973	27973					-0.0436342330693833
SAVLGRRTP	9	Unmodified	_SAVLGRRTP_					0	0	0		ENST00000410030.1_1_17:73900359-73901082:-|nuORF;ENST00000464758.1_1_17:73900462-73900977:-|nuORF;ENST00000493383.5_1_17:73897833-73900929:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF;ENSG00000204316|ENST00000309352|MRPL38	ENST00000410030.1_1_17:73900359-73901082:-|nuORF	ENST00000410030.1_1_17:73900359-73901082:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	478.7849426269531	2	478.785433	955.556313	0.30479	0.00014593	0.012508	5.9885E-06	0.3173	0.00015192	478.785324897491	50.386	1.7285	50.027	49.517	51.246	-0.35878					84	33	5	0	0	0	0.72852	1	18560	18560		3.2813	0	1	195590000			29104	6326	18503	18598	27974	27974					0.07675698257230579
SAYGGLTSP	9	Unmodified	_SAYGGLTSP_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__Q9H552;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;CON__REFSEQ:XP_092267;CON__H-INV:HIT000292931;ENST00000551916.1_1_12:62273577-62274426:+|nuORF	nc|ENSG00000170421|P05787-2|KRT8;CON__H-INV:HIT000292931;ENST00000551916.1_1_12:62273577-62274426:+|nuORF	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	852.4107666015625	1	852.409774	851.402498	0.81613	0.00069568	-0.0032726	-2.7896E-06	0.81286	0.00069289	852.4096310026108	34.571	0.468	34.571	34.233	34.701	0					15	8	2	0	0	0	0.050578	1	12783	12783		74.423	14.033	1	12876000		+	29105	558;541;8761	18504	18599	27975	27975					-0.029147562989578546
SCAPDEPP	8	Unmodified	_SCAPDEPP_					0	0	0			REV__ENST00000378947.7_2_5:131792826-131792928:+|nuORF	REV__ENST00000378947.7_2_5:131792826-131792928:+|nuORF	MSMS	HCT116MG_D190212_S1	1	408.1653747558594	2	408.165636	814.316719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.889	1	36.889	36.389	37.389	0								0	0	0	0.8837	1	13765	13765		2.8892	0	1		+		29106	15254	18505	18600	27976	27976					-0.09786664476121132
SCCCCCCCRP	10	Unmodified	_SCCCCCCCRP_					0	0	0			REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	MSMS	HCT116MG_D190212_S2	2	540.6378173828125	2	540.637656	1079.26076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.006	1	38.921	38.421	39.421	-0.084618								0	0	0	0.96911	1	14667	14667		0.45834	0	1		+		29107	16318	18506	18601	27977	27977					-0.27570062838753984
SCCCCWCFCC	10	Unmodified	_SCCCCWCFCC_					0	0	0			REV__ENSG00000091844|ENST00000206262|RGS17	REV__ENSG00000091844|ENST00000206262|RGS17	MSMS	HCT116MG_D190212_S3	3	580.6343994140625	2	580.634582	1159.25461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8453	1	2.8905	2.3905	3.3905	0.045237								0	0	0	0.97116	1	866	866		0	0	1		+		29108	11006	18507	18602	27978	27978					-0.3186458107029466
SCCCTHCC	8	Unmodified	_SCCCTHCC_					0	0	0		ENSG00000204323|ENST00000375215|SMIM5	ENSG00000204323|ENST00000375215|SMIM5	ENSG00000204323|ENST00000375215|SMIM5	MSMS	HCT116MG_D190212_S4	4	430.1029052734375	2	430.104829	858.195106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.23159	1	-0.03297	-0.53297	0.46703	-0.26456								0	0	0	0.8837	1	85	85		0	0	1				29109	6327	18508	18603	27979	27979					-0.23966392697809624
SCCESSCCCPC	11	Unmodified	_SCCESSCCCPC_					0	0	0		ENSG00000241241|ENST00000440582|KRTAP4-16	ENSG00000241241|ENST00000440582|KRTAP4-16	ENSG00000241241|ENST00000440582|KRTAP4-16	MSMS	HCT116MG_D190212_S3	3	375.4258117675781	3	375.426314	1123.25711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.884	1	11.939	11.439	12.439	0.055045								0	0	0	0.96208	1	3669	3669		0	0	1				29110	6542	18509	18604	27980	27980					-0.29958454131633516
SCCESSCCCPC	11	Unmodified	_SCCESSCCCPC_					0	0	0		ENSG00000241241|ENST00000440582|KRTAP4-16	ENSG00000241241|ENST00000440582|KRTAP4-16	ENSG00000241241|ENST00000440582|KRTAP4-16	MSMS	HCT116MG_D190212_S3	3	375.4259033203125	3	375.426314	1123.25711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.402	1	13.472	12.972	13.972	0.069158								0	0	0	0.96208	1	4247	4247		0	0	1				29111	6542	18509	18604	27981	27981					-0.29958454131633516
SCCETGCC	8	Unmodified	_SCCETGCC_					0	0	0		KRTAP1-3|p.C40_Q41insETGCCQPSCC|1|0.0|ENSG00000221880|chr17:41034702-41034703|-/CAGCAGCTTGGCTGGCAGCAGCCGGTCTCA|inframe_insertion	KRTAP1-3|p.C40_Q41insETGCCQPSCC|1|0.0|ENSG00000221880|chr17:41034702-41034703|-/CAGCAGCTTGGCTGGCAGCAGCCGGTCTCA|inframe_insertion	KRTAP1-3|p.C40_Q41insETGCCQPSCC|1|0.0|ENSG00000221880|chr17:41034702-41034703|-/CAGCAGCTTGGCTGGCAGCAGCCGGTCTCA|inframe_insertion	MSMS	HCT116MG_D190212_S1	1	403.10205078125	2	403.10281	804.191066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.864	1	58.864	58.364	59.364	0								0	0	0	0.8837	1	22687	22687		0	0	1				29112	9273	18510	18605	27982	27982					-0.21886158919869558
SCCHSQSCSCP	11	Unmodified	_SCCHSQSCSCP_					0	0	0			REV__ENSG00000164056|ENST00000651917|SPRY1	REV__ENSG00000164056|ENST00000651917|SPRY1	MSMS	HCT116MG_D190212_S2	2	381.1885070800781	3	381.1225	1140.34567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.789	1	10.516	10.016	11.016	-0.27365								0	0	0	0.96141	1	3436	3436		0.094841	0	1		+		29113	12972	18511	18606	27983	27983					-0.21888954505288893
SCDDNGCDCQ	10	Unmodified	_SCDDNGCDCQ_					0	0	0		ENST00000509537.1_1_4:187511811-187516897:-|nuORF	ENST00000509537.1_1_4:187511811-187516897:-|nuORF	ENST00000509537.1_1_4:187511811-187516897:-|nuORF	MSMS	HCT116MG_D190212_S2	2	353.7648010253906	3	353.765258	1058.27394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.591	1	10.318	9.8178	10.818	-0.27365								0	0	0	0.97116	1	3360	3360		0	0	1				29114	8487	18512	18607	27984	27984					-0.2528617065815979
SCDDSCPI	8	Unmodified	_SCDDSCPI_					0	0	0			REV__DNAH7|p.D2941Y|1|0.29|ENSG00000118997|chr2:195845126-195845126|C/A|missense_variant	REV__DNAH7|p.D2941Y|1|0.29|ENSG00000118997|chr2:195845126-195845126|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	420.1484680175781	2	420.149129	838.283704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.677	1	42.677	42.177	43.177	0								0	0	0	0.8837	1	16103	16103		0.79363	0	1		+		29115	10385	18513	18608	27985	27985					-0.14190614590484074
SCETETCD	8	Unmodified	_SCETETCD_					0	0	0			REV__ENST00000539906.5_2_12:69081344-69083328:+|nuORF	REV__ENST00000539906.5_2_12:69081344-69083328:+|nuORF	MSMS	HCT116MG_D190212_S4	4	444.17230224609375	2	444.141501	886.268448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.592	1	13.429	12.929	13.929	-0.16233								0	0	0	0.8837	1	4270	4270		0	0	1		+		29116	14542	18514	18609	27986	27986					-0.17923526178344673
SCFNSCCCFSL	11	Unmodified	_SCFNSCCCFSL_					0	0	0		ENST00000541164.1_19:18553911-18554356:-|nuORF	ENST00000541164.1_19:18553911-18554356:-|nuORF	ENST00000541164.1_19:18553911-18554356:-|nuORF	MSMS	HCT116MG_D190212_S1	1	606.868408203125	2	607.21088	1212.40721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.319	1	17.319	16.819	17.819	0								0	0	0	0.9598	1	5887	5887		1.1933	0	1				29117	8693	18515	18610	27987	27987					-0.19050022806004563
SCKSSGSL	8	Unmodified	_SCKSSGSL_					0	0	0		IFNA14|p.C20G|1|0.34|ENSG00000228083|chr9:21239878-21239878|A/C|missense_variant	IFNA14|p.C20G|1|0.34|ENSG00000228083|chr9:21239878-21239878|A/C|missense_variant	IFNA14|p.C20G|1|0.34|ENSG00000228083|chr9:21239878-21239878|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	768.357177734375	1	768.35563	767.348354	0.95816	0.00073621	0.72333	0.00055577	1.6815	0.001292	768.3560531821021	55.133	0.30453	54.945	54.816	55.121	-0.18797					12	5	3	0	0	0	0.8672	1	21262	21262		2.3027	0	1	91525000			29118	9231	18516	18611	27988	27988					-0.04462671722149025
SCMGPCCP	8	Unmodified	_SCMGPCCP_					0	0	0			REV__ENST00000372309.7_2_9:133996674-133996797:+|nuORF	REV__ENST00000372309.7_2_9:133996674-133996797:+|nuORF	MSMS	HCT116MG_D190212_S1	1	399.1273193359375	2	399.126088	796.237623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.95	1	31.95	31.45	32.45	0								0	0	0	0.8837	1	11773	11773		0.79363	0	1		+		29119	15171	18517	18612	27989	27989					-0.16864674297914917
SCPCVGGF	8	Unmodified	_SCPCVGGF_					0	0	0		ENST00000447540.5_2_16:53330914-53337709:+|nuORF	ENST00000447540.5_2_16:53330914-53337709:+|nuORF	ENST00000447540.5_2_16:53330914-53337709:+|nuORF	MSMS	HCT116MG_D190212_S1	1	385.1527404785156	2	385.154017	768.293481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0857	1	2.0857	1.5857	2.5857	0								0	0	0	0.8837	1	621	621		0.69038	0.69038	1				29120	7964	18518	18613	27990	27990					-0.0999338179442475
SCTEHDEC	8	Unmodified	_SCTEHDEC_					0	0	0		nc|ENSG00000184613|Q99435-2|NELL2;ENST00000549668.1_1_12:44926343-45059345:-|nuORF;NELL2|p.C688Afs*90|1|0.39|ENSG00000184613|chr12:44522113-44522113|A/-|frameshift_variant;nc|ENSG00000184613|Q99435-4|NELL2;ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-3|NELL2;nc|ENSG00000165973|Q92832-2|NELL1;ENSG00000165973|ENST00000357134|NELL1	nc|ENSG00000184613|Q99435-2|NELL2	nc|ENSG00000184613|Q99435-2|NELL2	MSMS	HCT116MG_D190212_S1	1	462.1462097167969	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.138	1	51.138	50.638	51.638	0								0	0	0	0.8837	1	19530	19530		0.69038	0.69038	1				29121	9579	18519	18614	27991	27991					-0.18456704084189823
SCVTKKLSP	9	Unmodified	_SCVTKKLSP_					0	0	0		ENSG00000180479|ENST00000451802|ZNF571	ENSG00000180479|ENST00000451802|ZNF571	ENSG00000180479|ENST00000451802|ZNF571	MULTI-SECPEP	HCT116MG_D190212_S3	3	481.26910400390625	2	481.770603	961.526652	0.14473	6.9727E-05	3.0142	0.0014522	3.159	0.0015219	481.7720742338514	23.084	0.3123	23.044	22.875	23.187	-0.03968					9	5	2	0	0	0	0.25347	1	8162	8162		14.838	7.549	1	6320100			29122	5601	18520	18615	27992	27992					0.04434998196870765
SCYCDSCD	8	Unmodified	_SCYCDSCD_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S1	1	448.5606689453125	2	448.116971	894.21939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.397	1	19.397	18.897	19.897	0								0	0	0	0.8837	1	6724	6724		0	0	1		+		29123	10180	18521	18616	27993	27993					-0.23195137738935045
SCYCDSCD	8	Unmodified	_SCYCDSCD_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S1	1	448.2294006347656	2	448.116971	894.21939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.66	1	20.66	20.16	21.16	0								0	0	0	0.8837	1	7233	7233		0	0	1		+		29124	10180	18521	18616	27994	27994					-0.23195137738935045
SCYCDSCD	8	Unmodified	_SCYCDSCD_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S1	1	448.23992919921875	2	448.116971	894.21939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.369	1	23.369	22.869	23.869	0								0	0	0	0.8837	1	8319	8319		0	0	1		+		29125	10180	18521	18616	27995	27995					-0.23195137738935045
SCYCDSCD	8	Unmodified	_SCYCDSCD_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S2	2	448.2350769042969	2	448.116971	894.21939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.002	1	18.633	18.133	19.133	-0.3695								0	0	0	0.8837	1	6564	6564		0	0	1		+		29126	10180	18521	18616	27996	27996					-0.23195137738935045
SCYCDSCD	8	Unmodified	_SCYCDSCD_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S3	3	447.698974609375	2	448.116971	894.21939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.535	1	16.62	16.12	17.12	0.085424								0	0	0	0.8837	1	5494	5494		0	0	1		+		29127	10180	18521	18616	27997	27997					-0.23195137738935045
SCYCDSCD	8	Unmodified	_SCYCDSCD_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|83|1|anti-sense	MSMS	HCT116MG_D190212_S3	3	447.72479248046875	2	448.116971	894.21939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.568	1	16.654	16.154	17.154	0.085424								0	0	0	0.8837	1	5507	5507		0	0	1		+		29128	10180	18521	18616	27998	27998					-0.23195137738935045
SCYEIWNLY	9	Unmodified	_SCYEIWNLY_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MSMS	HCT116MG_D190212_S4	4	595.7626953125	2	595.762975	1189.5114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.32	1	44.948	44.448	45.448	-0.37266								0	0	0	0.7689	1	16714	16714		4.756	0.22714	1		+		29129	11099	18522	18617	27999	27999					-0.07577913390969115
SDAAGGFK	8	Unmodified	_SDAAGGFK_					0	0	0			REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC	REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC	MSMS	HCT116MG_D190212_S2	2	376.6823425292969	2	376.682311	751.350068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.847	1	35.715	35.215	36.215	-0.13247								0	0	0	0.85589	1	13386	13386		18.135	3.2967	1		+		29130	12945	18523	18618	28000	28000					-0.03555294641898854
SDCCLCCCCCG	11	Unmodified	_SDCCLCCCCCG_					0	0	0		nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	MSMS	HCT116MG_D190212_S3	3	371.4208984375	3	371.420395	1111.23936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.578	1	11.631	11.131	12.131	0.053042								0	0	0	0.96208	1	3558	3558		0	0	1				29131	3574	18524	18619	28001	28001					-0.3118149265815191
SDDCGCND	8	Unmodified	_SDDCGCND_					0	0	0			REV__ENSG00000075290|ENST00000343737|WNT8B	REV__ENSG00000075290|ENST00000343737|WNT8B	MULTI-SECPEP	HCT116MG_D190212_S4	4	828.2120361328125	1	828.213459	827.206182	0.96485	0.0007991	-1.6336	-0.001353	-0.6688	-0.00055391	828.2117334559201	24.655	0.31082	24.386	24.186	24.497	-0.26881					10	5	3	0	0	0	0.33627	1	8725	8725		0	0	1	2166600	+		29132	10807	18525	18620	28002	28002					-0.21433252526662727
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S1	1	463.1314697265625	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.83	1	12.83	12.33	13.33	0								0	0	0	0.8837	1	4139	4139		0	0	1		+		29133	13963	18526	18621	28003	28003					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S1	1	463.1307678222656	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.353	1	13.353	12.853	13.853	0								0	0	0	0.8837	1	4334	4334		0	0	1		+		29134	13963	18526	18621	28004	28004					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S3	3	463.130859375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2088	1	1.2697	0.76966	1.7697	0.060905								0	0	0	0.8837	1	382	382		0	0	1		+		29135	13963	18526	18621	28005	28005					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S3	3	463.13079833984375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.1897	1	2.245	1.745	2.745	0.055284								0	0	0	0.8837	1	668	668		0	0	1		+		29136	13963	18526	18621	28006	28006					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S3	3	463.1307678222656	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9393	1	8.9599	8.4599	9.4599	0.020599								0	0	0	0.8837	1	2704	2704		0	0	1		+		29137	13963	18526	18621	28007	28007					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.130615234375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.67538	1	0.41082	-0.089177	0.91082	-0.26456								0	0	0	0.8837	1	219	219		0	0	1		+		29138	13963	18526	18621	28008	28008					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.1308288574219	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1979	1	0.93333	0.43333	1.4333	-0.26456								0	0	0	0.8837	1	373	373		0	0	1		+		29139	13963	18526	18621	28009	28009					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.1305847167969	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2624	1	1.9978	1.4978	2.4978	-0.26456								0	0	0	0.8837	1	697	697		0	0	1		+		29140	13963	18526	18621	28010	28010					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.1653137207031	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7137	1	5.4522	4.9522	5.9522	-0.26151								0	0	0	0.8837	1	1744	1744		0	0	1		+		29141	13963	18526	18621	28011	28011					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.1308288574219	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8941	1	5.6326	5.1326	6.1326	-0.26151								0	0	0	0.8837	1	1803	1803		0	0	1		+		29142	13963	18526	18621	28012	28012					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.13067626953125	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4034	1	6.1466	5.6466	6.6466	-0.25684								0	0	0	0.8837	1	1959	1959		0	0	1		+		29143	13963	18526	18621	28013	28013					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.1307373046875	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3509	1	7.1094	6.6094	7.6094	-0.24153								0	0	0	0.8837	1	2250	2250		0	0	1		+		29144	13963	18526	18621	28014	28014					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.130859375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9788	1	8.7581	8.2581	9.2581	-0.22071								0	0	0	0.8837	1	2746	2746		0	0	1		+		29145	13963	18526	18621	28015	28015					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.1308288574219	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4903	1	9.2806	8.7806	9.7806	-0.20971								0	0	0	0.8837	1	2901	2901		0	0	1		+		29146	13963	18526	18621	28016	28016					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.13079833984375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.25	1	10.051	9.5508	10.551	-0.1993								0	0	0	0.8837	1	3142	3142		0	0	1		+		29147	13963	18526	18621	28017	28017					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.130859375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.909	1	11.735	11.235	12.235	-0.17441								0	0	0	0.8837	1	3681	3681		0	0	1		+		29148	13963	18526	18621	28018	28018					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.1307678222656	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.059	1	11.885	11.385	12.385	-0.17441								0	0	0	0.8837	1	3730	3730		0	0	1		+		29149	13963	18526	18621	28019	28019					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.1307067871094	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.082	1	13.921	13.421	14.421	-0.16089								0	0	0	0.8837	1	4444	4444		0	0	1		+		29150	13963	18526	18621	28020	28020					-0.21830916401688683
SDDDDDED	8	Unmodified	_SDDDDDED_					0	0	0			REV__ENSG00000188613|ENST00000425699|NANOS1	REV__ENSG00000188613|ENST00000425699|NANOS1	MSMS	HCT116MG_D190212_S4	4	463.13067626953125	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.16	1	13.999	13.499	14.499	-0.16089								0	0	0	0.8837	1	4472	4472		0	0	1		+		29151	13963	18526	18621	28021	28021					-0.21830916401688683
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S1	1	536.1651611328125	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.898	1	49.898	49.398	50.398	0								0	0	0	0.97116	1	19025	19025		0	0	1		+		29152	10877	18527	18622	28022	28022					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S1	1	536.16552734375	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.285	1	52.285	51.785	52.785	0								0	0	0	0.97116	1	19994	19994		0	0	1		+		29153	10877	18527	18622	28023	28023					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S1	1	536.1649780273438	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.885	1	52.885	52.385	53.385	0								0	0	0	0.97116	1	20239	20239		0	0	1		+		29154	10877	18527	18622	28024	28024					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S1	1	536.1654663085938	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.451	1	53.451	52.951	53.951	0								0	0	0	0.97116	1	20470	20470		0	0	1		+		29155	10877	18527	18622	28025	28025					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S1	1	536.1655883789062	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.226	1	59.226	58.726	59.726	0								0	0	0	0.97116	1	22827	22827		0	0	1		+		29156	10877	18527	18622	28026	28026					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S1	1	536.408935546875	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.25	1	59.25	58.75	59.75	0								0	0	0	0.97116	1	22836	22836		0	0	1		+		29157	10877	18527	18622	28027	28027					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S3	3	536.1654663085938	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6532	1	8.6738	8.1738	9.1738	0.020599								0	0	0	0.97116	1	2610	2610		0	0	1		+		29158	10877	18527	18622	28028	28028					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S3	3	536.1654663085938	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.724	1	11.779	11.279	12.279	0.055045								0	0	0	0.97116	1	3611	3611		0	0	1		+		29159	10877	18527	18622	28029	28029					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1654663085938	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5545	1	2.2899	1.7899	2.7899	-0.26456								0	0	0	0.97116	1	776	776		0	0	1		+		29160	10877	18527	18622	28030	28030					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1654663085938	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5826	1	3.318	2.818	3.818	-0.26456								0	0	0	0.97116	1	1092	1092		0	0	1		+		29161	10877	18527	18622	28031	28031					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1654663085938	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1536	1	8.9439	8.4439	9.4439	-0.20971								0	0	0	0.97116	1	2798	2798		0	0	1		+		29162	10877	18527	18622	28032	28032					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.16552734375	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.801	1	45.429	44.929	45.929	-0.37206								0	0	0	0.92272	1	16908	16908		10.824	0	1		+		29163	10877	18527	18622	28033	28033					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.16552734375	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.437	1	47.067	46.567	47.567	-0.37038								0	0	0	0.97116	1	17546	17546		0	0	1		+		29164	10877	18527	18622	28034	28034					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1653442382812	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.588	1	48.22	47.72	48.72	-0.36728								0	0	0	0.97116	1	17999	17999		0	0	1		+		29165	10877	18527	18622	28035	28035					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1646118164062	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.707	1	49.345	48.845	49.845	-0.36213								0	0	0	0.97116	1	18446	18446		0	0	1		+		29166	10877	18527	18622	28036	28036					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.165771484375	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.423	1	51.072	50.572	51.572	-0.35028								0	0	0	0.97116	1	19138	19138		0	0	1		+		29167	10877	18527	18622	28037	28037					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1653442382812	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.143	1	52.808	52.308	53.308	-0.33473								0	0	0	0.97116	1	19832	19832		0	0	1		+		29168	10877	18527	18622	28038	28038					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1653442382812	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.709	1	53.38	52.88	53.88	-0.32923								0	0	0	0.97116	1	20061	20061		0	0	1		+		29169	10877	18527	18622	28039	28039					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1654663085938	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.282	1	53.958	53.458	54.458	-0.32349								0	0	0	0.97116	1	20292	20292		0	0	1		+		29170	10877	18527	18622	28040	28040					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1654663085938	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.859	1	54.541	54.041	55.041	-0.31774								0	0	0	0.97116	1	20524	20524		0	0	1		+		29171	10877	18527	18622	28041	28041					-0.21635877172775508
SDDDSSEDSD	10	Unmodified	_SDDDSSEDSD_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MSMS	HCT116MG_D190212_S4	4	536.1656494140625	2	536.16527	1070.31599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.001	1	55.689	55.189	56.189	-0.31196								0	0	0	0.97116	1	20985	20985		0	0	1		+		29172	10877	18527	18622	28042	28042					-0.21635877172775508
SDDECDNDGDC	11	Unmodified	_SDDECDNDGDC_					0	0	0			REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	594.1053466796875	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.224	1	24.224	23.724	24.724	0								0	0	0	0.96157	1	8663	8663		0.26902	0.26902	1		+		29173	16986	18528	18623	28043	28043					-0.28303774548021465
SDDECDNDGDC	11	Unmodified	_SDDECDNDGDC_					0	0	0			REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	REV__LRP4|p.C191Afs*206|1|0.17|ENSG00000134569|chr11:46899010-46899010|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	594.15869140625	2	594.158607	1186.30266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.137	1	48.772	48.272	49.272	-0.365								0	0	0	0.96208	1	18216	18216		0	0	1		+		29174	16986	18528	18623	28044	28044					-0.28303774548021465
SDDEDDDEEEY	11	Unmodified	_SDDEDDDEEEY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant;SUPT6H|p.E143Kfs*51|1|0.38|ENSG00000109111|chr17:28675046-28675046|A/-|frameshift_variant;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MSMS	HCT116MG_D190212_S2	2	680.71484375	2	680.712781	1359.41101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.599	1	40.529	40.029	41.029	-0.069626								0	0	0	0.96141	1	15315	15315		0.35063	0	1				29175	2195	18529	18624	28045	28045					-0.25431988492255186
SDDGGYVG	8	Unmodified	_SDDGGYVG_					0	0	0			REV__ADAMTSL4|p.C477Y|1|0.18|ENSG00000143382|chr1:150556220-150556220|G/A|missense_variant	REV__ADAMTSL4|p.C477Y|1|0.18|ENSG00000143382|chr1:150556220-150556220|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	385.1529846191406	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.87	1	10.91	10.41	11.41	0.039975								0	0	0	0.8837	1	3312	3312		2.8892	2.0956	1		+		29176	9862	18530	18625	28046	28046					-0.10080181638124941
SDECETCH	8	Unmodified	_SDECETCH_					0	0	0			REV__ENSG00000131116|ENST00000300811|ZNF428	REV__ENSG00000131116|ENST00000300811|ZNF428	MSMS	HCT116MG_D190212_S3	3	462.14666748046875	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.049	1	36.748	36.248	37.248	-0.30116								0	0	0	0.8837	1	13710	13710		0.79363	0	1		+		29177	11957	18531	18626	28047	28047					-0.18456704084201192
SDECLFHRNWL	11	Unmodified	_SDECLFHRNWL_					0	0	0			REV__ENST00000348831.8_1_21:46645404-46645467:+|nuORF	REV__ENST00000348831.8_1_21:46645404-46645467:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	473.253662109375	3	473.887316	1418.64012	0.18577	8.8034E-05	1.6199	0.00076765	1.8057	0.00085568	474.22235939164955	26.996	0.15607	26.996	26.865	27.022	0					4	2	2	0	0	0	0.36554	1	9784	9784		2.6312	0	1	4576400	+		29178	15019	18532	18627	28048	28048					-0.05245558428032382
SDEESSDEDRP	11	Unmodified	_SDEESSDEDRP_					0	0	0			REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-MSMS	HCT116MG_D190212_S3	3	633.2418823242188	2	633.241843	1264.46913	0.45382	0.00028738	0.86516	0.00054785	1.319	0.00083523	633.2422084839661	40.409	0.46865	40.108	39.903	40.371	-0.30161					17	8	3	0	0	0	0.73536	1	14998	14998		8.7454	0.58988	1	18659000	+		29179	13182	18533	18628	28049	28049					-0.15252262056333166
SDEESSDEDRP	11	Unmodified	_SDEESSDEDRP_					0	0	0			REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	633.241843	1264.46913	0.4653	0.00029465	1.2846	0.00081345	1.7499	0.0011081	633.2427649008092	40.098	0.20725	40.098	40.021	40.228	0	-0.034805	0.00037585	NaN	8.7454	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7256700	+		29180	13182	18533	18628							-0.15252262056333166
SDEESSDEDRP	11	Unmodified	_SDEESSDEDRP_					0	0	0			REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	633.241843	1264.46913	0.54759	0.00034676	1.6384	0.0010375	2.186	0.0013843	633.242740423281	40.238	0.41529	40.165	39.998	40.413	-0.072842	0.032214	0.000824	NaN	8.7454	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24893000	+		29181	13182	18533	18628							-0.15252262056333166
SDEESSDEDRP	11	Unmodified	_SDEESSDEDRP_					0	0	0			REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	633.241843	1264.46913	0.45382	0.00028738	0.86516	0.00054785	1.319	0.00083523	633.2422084839661	40.409	0.46865	40.108	39.903	40.371	-0.30161	-0.025523	-0.00015535	NaN	8.7454	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18659000	+		29182	13182	18533	18628							-0.15252262056333166
SDEESSDEDRP	11	Unmodified	_SDEESSDEDRP_					0	0	0			REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	633.241843	1264.46913	0.42939	0.00027191	0.84246	0.00053348	1.2719	0.00080539	633.2423676370573	40.539	0.29803	40.161	39.988	40.286	-0.37828	0.028114	-0.0001841	NaN	8.7454	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4359400	+		29183	13182	18533	18628							-0.15252262056333166
SDERSPSGDGY	11	Unmodified	_SDERSPSGDGY_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	HCT116MG_D190212_S2	2	585.8286743164062	2	585.238906	1168.46326	0.51794	0.00030312	-1.221	-0.00071457	-0.70305	-0.00041145	585.2380722761059	19.378	0.62434	19.008	18.68	19.304	-0.3695					19	11	2	0	0	0	0.67406	1	6717	6717		27.223	5.6863	1	24333000	+		29184	12015	18534	18629	28050	28050					-0.11423315777324206
SDFWTKLPYK	10	Unmodified	_SDFWTKLPYK_					0	0	0			REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	429.08868408203125	3	428.892284	1283.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0971	1	5.1197	4.6197	5.6197	0.022513								0	0	0	0.96804	1	1533	1533		0.69767	0.1345	1		+		29185	13968	18535	18630	28051	28051					0.024542567115986458
SDGPGKTTMN	10	Unmodified	_SDGPGKTTMN_					0	0	0			REV__ENSG00000163632|ENST00000295896|C3orf49	REV__ENSG00000163632|ENST00000295896|C3orf49	MSMS	HCT116MG_D190212_S4	4	504.22515869140625	2	504.226756	1006.43896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.752	1	17.577	17.077	18.077	-0.17501								0	0	0	0.90291	1	5911	5911		15.248	0.8431	1		+		29186	12939	18536	18631	28052	28052					-0.06400247464546283
SDGPGKTTMN	10	Unmodified	_SDGPGKTTMN_					0	0	0			REV__ENSG00000163632|ENST00000295896|C3orf49	REV__ENSG00000163632|ENST00000295896|C3orf49	MSMS	HCT116MG_D190212_S4	4	504.2255859375	2	504.226756	1006.43896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.378	1	18.198	17.698	18.698	-0.18052								0	0	0	0.92283	1	6164	6164		10.8	1.4164	1		+		29187	12939	18536	18631	28053	28053					-0.06400247464546283
SDGSPPLI	8	Unmodified	_SDGSPPLI_					0	0	0			REV__nc|ENSG00000137948|Q58F21-5|BRDT	REV__nc|ENSG00000137948|Q58F21-5|BRDT	MSMS	HCT116MG_D190212_S2	2	393.2063903808594	2	393.205618	784.396684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.681	1	62.552	62.052	63.052	-0.12924								0	0	0	0.8837	1	24298	24298		2.5775	0	1		+		29188	12200	18537	18632	28054	28054					-0.004138548105970585
SDGYNDESDK	10	Unmodified	_SDGYNDESDK_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MULTI-MSMS	HCT116MG_D190212_S1	1	377.1478576660156	3	377.147519	1128.42073	-0.12864	-4.8515E-05	0.43015	0.00016223	0.30151	0.00011371	377.1477137478133	27.399	0.20798	27.399	27.23	27.438	0					5	3	2	0	0	0	0.82332	1	9954	9954		5.7834	1.0675	1	10362000	+		29189	12172	18538	18633	28055	28055					-0.13834710905553038
SDHHENKY	8	Unmodified	_SDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP;ENSG00000069956|ENST00000261845|MAPK6	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;ENSG00000069956|ENST00000261845|MAPK6	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	HCT116MG_D190212_S2	2	515.22314453125	2	515.222862	1028.43117	0.2362	0.00012169	-0.2118	-0.00010913	0.024394	1.2568E-05	515.223086906458	17.093	0.20822	16.743	16.613	16.821	-0.34933					5	3	2	0	0	0	0.59507	1	5823	5823		32.786	18.204	1	7894200			29190	1747;1225	18539	18634	28056	28056					-0.0819063866979377
SDIKSIRNNFL	11	Unmodified	_SDIKSIRNNFL_					0	0	0			REV__ENSG00000171962|ENST00000399187|DRC3	REV__ENSG00000171962|ENST00000399187|DRC3	MULTI-MSMS	HCT116MG_D190212_S1	1	436.88140869140625	3	436.241976	1305.7041	0.088768	3.8724E-05	0.084798	3.6992E-05	0.17357	7.5717E-05	436.2419639641556	15.145	0.26101	15.145	15.066	15.327	0					5	4	2	0	0	0	0.74191	1	5048	5048		2.8433	0	1	1721500	+		29191	13370	18540	18635	28057	28057					0.06347545000585342
SDIKSIRNNFL	11	Unmodified	_SDIKSIRNNFL_					0	0	0			REV__ENSG00000171962|ENST00000399187|DRC3	REV__ENSG00000171962|ENST00000399187|DRC3	MULTI-SECPEP	HCT116MG_D190212_S1	1	436.88140869140625	3	436.241976	1305.7041	0.088768	3.8724E-05	0.084798	3.6992E-05	0.17357	7.5717E-05	436.2419639641556	15.145	0.26101	15.145	15.066	15.327	0					5	4	2	0	0	0	0.36593	1	5048	5048		2.8433	1.5136	1	1721500	+		29192	13370	18540	18635	28058	28058					0.06347545000585342
SDKGFNREMES	11	Unmodified	_SDKGFNREMES_					0	0	0		ENST00000423121.1_1_1:165738494-165742748:+|nuORF	ENST00000423121.1_1_1:165738494-165742748:+|nuORF	ENST00000423121.1_1_1:165738494-165742748:+|nuORF	MSMS	HCT116MG_D190212_S3	3	650.2841796875	2	650.285334	1298.55611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.401	1	33.111	32.611	33.611	-0.29013								0	0	0	0.89543	1	12257	12257		20.581	8.3403	1				29193	7798	18541	18636	28059	28059					-0.08122134315590301
SDKRYIDKTFF	11	Unmodified	_SDKRYIDKTFF_					0	0	0			REV__MER65-int_dup826|chr19:41728927-41729274:+|5.36374670786269|0.0416066207026206|7.01|476.0|4|1|sense	REV__MER65-int_dup826|chr19:41728927-41729274:+|5.36374670786269|0.0416066207026206|7.01|476.0|4|1|sense	MSMS	HCT116MG_D190212_S4	4	710.3692626953125	2	710.366984	1418.71942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.306	1	27.975	27.475	28.475	-0.33138								0	0	0	0.94942	1	10173	10173		6.6304	1.7334	1		+		29194	17020	18542	18637	28060	28060					0.026804117977462738
SDKWEKLE	8	Unmodified	_SDKWEKLE_					0	0	0		ENST00000566838.2_3_16:82131651-82132038:+|nuORF;ENSG00000086696|ENST00000199936|HSD17B2	ENST00000566838.2_3_16:82131651-82132038:+|nuORF	ENST00000566838.2_3_16:82131651-82132038:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	517.798095703125	2	517.761289	1033.50803	0.022745	1.1776E-05	0.29924	0.00015494	0.32199	0.00016671	517.7614838085013	36.395	0.57227	36.094	35.885	36.458	-0.30079					22	10	3	0	0	0	0.73234	1	13565	13565		19.257	1.1106	1	8111300			29195	1473	18543	18638	28061	28061					-0.007388401733123828
SDLEFSEVL	9	Unmodified	_SDLEFSEVL_					0	0	0			REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1038.499755859375	1	1038.49898	1037.49171	0.68501	0.00071138	0.052575	5.4599E-05	0.73759	0.00076598	1038.4986091223186	50.842	0.36139	50.666	50.502	50.864	-0.17644					10	6	2	0	0	0	0.031005	1	19503	19503		85.357	18.013	1	32975000	+		29196	18064	18544	18639	28062	28062					-0.025539661300854277
SDLEFSEVL	9	Unmodified	_SDLEFSEVL_					0	0	0			REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1038.5001220703125	1	1038.49898	1037.49171	0.49666	0.00051578	0.25797	0.0002679	0.75462	0.00078368	1038.499125329443	51.038	0.26136	50.724	50.594	50.855	-0.31381					8	4	2	0	0	0	0.065014	1	19272	19272		67.344	3.1075	1	8769600	+		29197	18064	18544	18639	28063	28063					-0.025539661300854277
SDLEFSEVL	9	Unmodified	_SDLEFSEVL_					0	0	0			REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1038.49898	1037.49171	0.61488	0.00063856	0.082839	8.6028E-05	0.69772	0.00072458	1039.501871943455	50.625	0.15472	50.625	50.523	50.678	0	-0.046616	-8.4222E-05	NaN	85.357	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13748000	+		29198	18064	18544	18639							-0.025539661300854277
SDLEFSEVL	9	Unmodified	_SDLEFSEVL_					0	0	0			REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1038.49898	1037.49171	0.68501	0.00071138	0.052575	5.4599E-05	0.73759	0.00076598	1038.4986091223186	50.842	0.36139	50.666	50.502	50.864	-0.17644	-0.0059644	-0.00011565	NaN	85.357	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32975000	+		29199	18064	18544	18639							-0.025539661300854277
SDLEFSEVL	9	Unmodified	_SDLEFSEVL_					0	0	0			REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	REV__ZBTB43|p.G158D|1|0.76|ENSG00000169155|chr9:126832982-126832982|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1038.49898	1037.49171	0.49666	0.00051578	0.25797	0.0002679	0.75462	0.00078368	1038.499125329443	51.038	0.26136	50.724	50.594	50.855	-0.31381	0.05258	9.7647E-05	NaN	85.357	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8769600	+		29200	18064	18544	18639							-0.025539661300854277
SDLGGPLP	8	Unmodified	_SDLGGPLP_					0	0	0		ENST00000571707.1_1_17:79609405-79612656:+|nuORF;nc|ENSG00000182612|Q9H1Z9|TSPAN10;ENSG00000182612|ENST00000611590|TSPAN10	ENST00000571707.1_1_17:79609405-79612656:+|nuORF	ENST00000571707.1_1_17:79609405-79612656:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	755.3944091796875	1	755.393396	754.386119	0.97788	0.00073868	0.40956	0.00030938	1.3874	0.0010481	755.3938184970704	41.298	0.52089	41.298	41.029	41.55	0					14	9	2	0	0	0	0.5791	1	15547	15547		34.187	2.0704	1	10850000			29201	5678	18545	18640	28064	28064					-0.0008983746504327428
SDLLVAVL	8	Unmodified	_SDLLVAVL_					0	0	0		ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	MSMS	HCT116MG_D190212_S3	3	415.254150390625	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.26	1	48.944	48.444	49.444	-0.31596								0	0	0	0.8837	1	18546	18546		2.5775	0	1				29202	5784	18546	18641	28065	28065					0.07456168154271836
SDLPGVKLSEK	11	Unmodified	_SDLPGVKLSEK_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MSMS	HCT116MG_D190212_S4	4	586.8275756835938	2	586.829703	1171.64485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.322	1	51.977	51.477	52.477	-0.34538								0	0	0	0.87053	1	19501	19501		23.79	6.6769	1		+		29203	10635	18547	18642	28066	28066					0.0658964898634622
SDLYNFYY	8	Unmodified	_SDLYNFYY_					0	0	0			REV__nc|ENSG00000153266|Q8TBJ5-2|FEZF2	REV__nc|ENSG00000153266|Q8TBJ5-2|FEZF2	MSMS	HCT116MG_D190212_S3	3	362.159912109375	3	362.158919	1083.45493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.864	1	56.585	56.085	57.085	-0.27913								0	0	0	0.8837	1	21597	21597		3.5965	1.098	1		+		29204	12649	18548	18643	28067	28067					-0.08346217956000146
SDNDSDTPRY	10	Unmodified	_SDNDSDTPRY_					0	0	0			REV__nc|ENSG00000144857|Q9BWV1|BOC	REV__nc|ENSG00000144857|Q9BWV1|BOC	MULTI-SECPEP	HCT116MG_D190212_S2	2	585.776611328125	2	585.238906	1168.46326	0.51794	0.00030312	-1.221	-0.00071457	-0.70305	-0.00041145	585.2380722761059	19.378	0.62434	19.008	18.68	19.304	-0.3695					19	11	2	0	0	0	0.28843	1	6601	6601		18.146	0	1	24333000	+		29205	10686	18549	18644	28068	28068					-0.11423315777324206
SDNQSDAA	8	Unmodified	_SDNQSDAA_					0	0	0		nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6	nc|ENSG00000173826|Q9H252-2|KCNH6	nc|ENSG00000173826|Q9H252-2|KCNH6	MSMS	HCT116MG_D190212_S2	2	404.1589660644531	2	404.159397	806.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8921	1	2.8518	2.3518	3.3518	-0.040353								0	0	0	0.8837	1	929	929		0.79363	0	1				29206	5306	18550	18645	28069	28069					-0.10665984614809076
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	402.17962646484375	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0932	1	5.0932	4.5932	5.5932	0								0	0	0	0.8837	1	1531	1531		0.69038	0	1		+		29207	10363	18551	18646	28070	28070					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	402.17999267578125	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2233	1	2.199	1.699	2.699	-0.024288								0	0	0	0.8837	1	726	726		0.69038	0	1		+		29208	10363	18551	18646	28071	28071					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	402.179931640625	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1172	1	5.9427	5.4427	6.4427	-0.17458								0	0	0	0.8837	1	1929	1929		0.69038	0	1		+		29209	10363	18551	18646	28072	28072					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	402.17974853515625	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.154	1	11.865	11.365	12.365	-0.28953								0	0	0	0.8837	1	3961	3961		0.69038	0	1		+		29210	10363	18551	18646	28073	28073					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	402.179443359375	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.739	1	12.442	11.942	12.942	-0.29721								0	0	0	0.8837	1	4167	4167		0.69038	0	1		+		29211	10363	18551	18646	28074	28074					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	402.1800231933594	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0683	1	9.0944	8.5944	9.5944	0.026101								0	0	0	0.8837	1	2740	2740		0.69038	0	1		+		29212	10363	18551	18646	28075	28075					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	402.1797790527344	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.617	1	63.403	62.903	63.903	-0.21454								0	0	0	0.8837	1	24264	24264		0.69038	0	1		+		29213	10363	18551	18646	28076	28076					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	402.1789245605469	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.142	1	63.936	63.436	64.436	-0.20569								0	0	0	0.8837	1	24422	24422		0.69038	0	1		+		29214	10363	18551	18646	28077	28077					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	402.179443359375	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.427	1	1.1624	0.6624	1.6624	-0.26456								0	0	0	0.8837	1	439	439		0.69038	0	1		+		29215	10363	18551	18646	28078	28078					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	402.1798095703125	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9998	1	3.7353	3.2353	4.2353	-0.26456								0	0	0	0.8837	1	1220	1220		0.69038	0	1		+		29216	10363	18551	18646	28079	28079					-0.06336803855469952
SDPDAGNK	8	Unmodified	_SDPDAGNK_					0	0	0			REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	REV__DIAPH1|p.F452S|1|0.13|ENSG00000131504|chr5:141576797-141576797|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	402.1792297363281	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6673	1	7.4258	6.9258	7.9258	-0.24153								0	0	0	0.8837	1	2342	2342		0.69038	0	1		+		29217	10363	18551	18646	28080	28080					-0.06336803855469952
SDPESLTYES	10	Unmodified	_SDPESLTYES_					0	0	0			REV__ENSG00000131116|ENST00000300811|ZNF428	REV__ENSG00000131116|ENST00000300811|ZNF428	MULTI-MSMS	HCT116MG_D190212_S3	3	564.7457885742188	2	564.240583	1126.46661	0.52473	0.00029608	3.5602	0.0020088	4.0849	0.0023049	564.2406556601367	29.24	0.52066	29.018	28.733	29.254	-0.22195					24	9	4	0	0	0	0.64004	1	10640	10640		25.399	1.3787	1	15208000	+		29218	11957	18552	18647	28081	28081					-0.09156065723323081
SDPFTHLAP	9	Unmodified	_SDPFTHLAP_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	492.7426452636719	2	492.742899	983.471246	0.38416	0.00018929	0.025663	1.2645E-05	0.40982	0.00020194	492.7428384693063	35.923	1.7221	35.923	35.424	37.146	0					77	32	3	0	0	0	0.21251	2	13719	13574;13719		39.957	3.9131	1	51372000			29219	674	18553	18648	28082;28083	28083					-0.02115091999246488
SDPFTHLAP	9	Unmodified	_SDPFTHLAP_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	492.7431945800781	2	492.742899	983.471246	0.55883	0.00027536	0.065136	3.2096E-05	0.62397	0.00030746	492.7428404114483	35.947	1.549	35.819	35.401	36.95	-0.12799					85	29	4	0	0	0	0.2682	1	13771	13771		34.102	7.2188	1	204410000			29220	674	18553	18648	28084	28084					-0.02115091999246488
SDPFTHLAP	9	Unmodified	_SDPFTHLAP_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	492.742431640625	2	492.742899	983.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.26	1	35.959	35.459	36.459	-0.30042								0	0	0	0.3894	1	13392	13392		34.102	5.6156	1				29221	674	18553	18648	28085	28085					-0.02115091999246488
SDPKQYRYIKL	11	Unmodified	_SDPKQYRYIKL_					0	0	0		nc|ENSG00000078618|O43847-2|NRDC;ENSG00000078618|ENST00000352171|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	nc|ENSG00000078618|O43847-2|NRDC	nc|ENSG00000078618|O43847-2|NRDC	MSMS	HCT116MG_D190212_S2	2	705.4533081054688	2	705.890626	1409.7667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.322	1	30.038	29.538	30.538	-0.28453								0	0	0	0.95636	1	11143	11143		2.9952	0.26005	1				29222	1369	18554	18649	28086	28086					0.07820691068764063
SDQILQVKYFE	11	Unmodified	_SDQILQVKYFE_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MSMS	HCT116MG_D190212_S2	2	685.3514404296875	2	685.353542	1368.69253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.146	1	37.041	36.541	37.541	-0.10519								0	0	0	0.85321	1	13914	13914		26.021	10.772	1				29223	848	18555	18650	28087	28087					0.022933031865704834
SDRDWDRRGR	10	Unmodified	_SDRDWDRRGR_					0	0	0		nc|ENSG00000198300|Q9GZU2-3|PEG3;PEG3|p.T824Nfs*10|1|0.16|ENSG00000198300|chr19:56815956-56815971|TCCCTTCCTTCAGAGG/-|frameshift_variant;nc|ENSG00000198300|Q9GZU2-2|PEG3;ENSG00000198300|ENST00000326441|PEG3;PEG3|p.A261Cfs*2|1|0.44|ENSG00000198300|chr19:56817827-56817828|-/A|frameshift_variant	nc|ENSG00000198300|Q9GZU2-3|PEG3	nc|ENSG00000198300|Q9GZU2-3|PEG3	MSMS	HCT116MG_D190212_S4	4	659.8236083984375	2	659.821598	1317.62864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.634	1	26.333	25.833	26.833	-0.30087								0	0	0	0.91355	1	9497	9497		12.873	1.3779	1				29224	6223	18556	18651	28088	28088					-0.017466194071630525
SDRVKMEPLP	10	Unmodified	_SDRVKMEPLP_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MSMS	HCT116MG_D190212_S3	3	586.3118286132812	2	586.310623	1170.60669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.75	1	41.448	40.948	41.948	-0.30257								0	0	0	0.91279	1	15532	15532		13.042	1.5478	1		+		29225	12129	18557	18652	28089	28089					0.02821439800072767
SDSPPGRPAPA	11	Unmodified	_SDSPPGRPAPA_					0	0	0		ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	MSMS	HCT116MG_D190212_S1	1	526.2619018554688	2	526.261988	1050.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.835	1	19.835	19.335	20.335	0								0	0	0	0.93552	1	6901	6901		13.906	0.86358	1				29226	6502	18558	18653	28090	28090					-0.01381206084556652
SDSYSSRTSSQ	11	Unmodified	_SDSYSSRTSSQ_					0	0	0		ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	MULTI-MSMS	HCT116MG_D190212_S2	2	402.17401123046875	3	402.174068	1203.50037	-0.10492	-4.2196E-05	0.22265	8.9545E-05	0.11773	4.7349E-05	402.17426077792646	21.164	0.3107	20.781	20.651	20.961	-0.38288					9	5	3	0	0	0	0.59843	1	7448	7448		24.229	12.597	1	18526000			29227	1142	18559	18654	28091	28091					-0.09323644231540129
SDYAEGPKSP	10	Unmodified	_SDYAEGPKSP_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	MSMS	HCT116MG_D190212_S2	2	350.8573303222656	3	350.829461	1049.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.83	1	24.455	23.955	24.955	-0.37521								0	0	0	0.8981	1	8915	8915		10.315	2.1597	1				29228	3308	18560	18655	28092	28092					-0.056200209326334516
SDYKLHKP	8	Unmodified	_SDYKLHKP_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MSMS	HCT116MG_D190212_S1	1	494.2664489746094	2	494.266542	986.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.869	1	21.869	21.369	22.369	0								0	0	0	0.8837	1	7715	7715		5.2307	0.47466	1		+		29229	12109	18561	18656	28093	28093					0.02473187271743882
SEAAAHAVA	9	Unmodified	_SEAAAHAVA_					0	0	0		nc|ENSG00000106459|Q16656-3|NRF1;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	MULTI-MSMS	HCT116MG_D190212_S2	2	413.70623779296875	2	413.706317	825.398081	-0.18434	-7.6261E-05	0.31017	0.00012832	0.12584	5.2059E-05	413.7064141800314	18.121	0.20867	17.764	17.65	17.858	-0.35647					5	3	2	0	0	0	0.12335	1	6224	6224		53.576	25.089	1	5452300			29230	2080	18562	18657	28094	28094					-0.021602207218734293
SEAAGVESLS	10	Unmodified	_SEAAGVESLS_					0	0	0		FOXR1|p.S125Afs*57|1|0.29|ENSG00000176302|chr11:118979188-118979188|C/-|frameshift_variant;nc|ENSG00000176302|Q6PIV2-2|FOXR1;ENSG00000176302|ENST00000317011|FOXR1	FOXR1|p.S125Afs*57|1|0.29|ENSG00000176302|chr11:118979188-118979188|C/-|frameshift_variant	FOXR1|p.S125Afs*57|1|0.29|ENSG00000176302|chr11:118979188-118979188|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	475.21490478515625	2	475.227279	948.440005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.44	1	16.098	15.598	16.598	-0.34183								0	0	0	0.61644	1	5532	5532		41.84	5.7126	1				29231	5416	18563	18658	28095	28095					-0.03627709823990699
SEAASYEF	8	Unmodified	_SEAASYEF_					0	0	0		ENST00000584212.1_1_17:17997264-18001751:+|nuORF;ENST00000578767.5_1_17:17997264-18002438:+|nuORF;ENST00000496428.6_1_17:17997264-18002989:+|nuORF;ENST00000583162.1_1_17:17991337-18002989:+|nuORF;ENST00000578173.5_1_17:17991241-18001751:+|nuORF;ENST00000582314.5_1_17:17997264-18003464:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000584212.1_1_17:17997264-18001751:+|nuORF	ENST00000584212.1_1_17:17997264-18001751:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	903.373779296875	1	903.373054	902.365778	1.0019	0.00090511	-0.44233	-0.00039959	0.55959	0.00050552	903.3729765852177	40.821	0.31036	40.751	40.571	40.881	-0.069626					7	5	2	0	0	0	0.065436	1	15435	15435		106.85	39.81	1	22206000			29232	2171	18564	18659	28096	28096					-0.08931052915522741
SEAASYEF	8	Unmodified	_SEAASYEF_					0	0	0		ENST00000584212.1_1_17:17997264-18001751:+|nuORF;ENST00000578767.5_1_17:17997264-18002438:+|nuORF;ENST00000496428.6_1_17:17997264-18002989:+|nuORF;ENST00000583162.1_1_17:17991337-18002989:+|nuORF;ENST00000578173.5_1_17:17991241-18001751:+|nuORF;ENST00000582314.5_1_17:17997264-18003464:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000584212.1_1_17:17997264-18001751:+|nuORF	ENST00000584212.1_1_17:17997264-18001751:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	903.3733520507812	1	903.373054	902.365778	0.89281	0.00080654	-0.2121	-0.0001916	0.68071	0.00061494	903.3728599466539	41.043	0.36512	40.741	40.527	40.893	-0.30185					12	6	3	0	0	0	0.065436	1	15252	15252		106.85	50.304	1	8650500			29233	2171	18564	18659	28097	28097					-0.08931052915522741
SEAASYEF	8	Unmodified	_SEAASYEF_					0	0	0		ENST00000584212.1_1_17:17997264-18001751:+|nuORF;ENST00000578767.5_1_17:17997264-18002438:+|nuORF;ENST00000496428.6_1_17:17997264-18002989:+|nuORF;ENST00000583162.1_1_17:17991337-18002989:+|nuORF;ENST00000578173.5_1_17:17991241-18001751:+|nuORF;ENST00000582314.5_1_17:17997264-18003464:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000584212.1_1_17:17997264-18001751:+|nuORF	ENST00000584212.1_1_17:17997264-18001751:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	903.3734130859375	1	903.373054	902.365778	0.72087	0.00065121	0.13271	0.00011989	0.85358	0.0007711	903.3729215078858	41.173	0.17195	40.795	40.676	40.848	-0.37732					5	3	2	0	0	0	0.23352	1	15151	15151		67.035	24.067	1	2035600			29234	2171	18564	18659	28098	28098					-0.08931052915522741
SEAAYKEAF	9	Unmodified	_SEAAYKEAF_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	HCT116MG_D190212_S1	1	508.2403259277344	2	508.24019	1014.46583	0.53959	0.00027424	-0.5746	-0.00029204	-0.03501	-1.7794E-05	508.23985649172243	33.219	0.25871	33.219	33.089	33.348	0					9	4	3	0	0	0	0.064006	1	12311	12311		67.838	31.332	1	9088100			29235	2991	18565	18660	28099	28099					-0.04082815581716659
SEAAYKEAF	9	Unmodified	_SEAAYKEAF_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	HCT116MG_D190212_S2	2	508.2405700683594	2	508.24019	1014.46583	0.72108	0.00036648	-0.33894	-0.00017226	0.38214	0.00019422	508.2400649845036	33.494	0.20404	33.301	33.123	33.327	-0.19297					6	3	2	0	0	0	0.22528	1	12441	12441		38.615	14.825	1	20008000			29236	2991	18565	18660	28100	28100					-0.04082815581716659
SEAAYKEAF	9	Unmodified	_SEAAYKEAF_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	HCT116MG_D190212_S3	3	508.239990234375	2	508.24019	1014.46583	0.23717	0.00012054	-0.46158	-0.00023459	-0.22441	-0.00011405	508.74158907757015	33.672	0.31102	33.382	33.252	33.563	-0.29013					9	5	2	0	0	0	0.094138	1	12378	12378		59.368	29.528	1	7157200			29237	2991	18565	18660	28101	28101					-0.04082815581716659
SEADFSIHF	9	Unmodified	_SEADFSIHF_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;ENST00000439296.2_1_1:243289753-243299542:-|nuORF;nc|ENSG00000154608|Q96L14|CEP170P1	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7852783203125	2	526.737814	1051.46108	0.64528	0.0003399	-0.27264	-0.00014361	0.37265	0.00019629	526.7377088604331	52.061	0.25805	51.878	51.732	51.99	-0.18368					6	4	2	0	0	0	0.050578	2	20000	20000;20014		74.423	40.32	1	7877200			29238	3828	18566	18661	28102;28103	28102					-0.06259699724478196
SEADIRGFVA	10	Unmodified	_SEADIRGFVA_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;TYMP|p.L223Pfs*54|1|0.03|ENSG00000025708|chr22:50527262-50527263|-/GTTTCTTACTGAGAATGCCTCCATTCTCAGCCCCTCCACGG|frameshift_variant;ENST00000476284.1_1_22:50964673-50968379:-|nuORF;ENST00000487162.1_1_22:50967616-50968379:-|nuORF	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MULTI-MSMS	HCT116MG_D190212_S2	2	532.772216796875	2	532.772188	1063.52982	0.50433	0.00026869	-0.7975	-0.00042488	-0.29317	-0.00015619	532.7721294100099	40.246	0.57097	40.173	39.945	40.516	-0.072838					17	10	3	0	0	0	0.18147	1	15157	15157		61.09	34.822	1	49906000			29239	955	18567	18662	28104	28104					0.0005996457523451681
SEADIRGFVA	10	Unmodified	_SEADIRGFVA_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;TYMP|p.L223Pfs*54|1|0.03|ENSG00000025708|chr22:50527262-50527263|-/GTTTCTTACTGAGAATGCCTCCATTCTCAGCCCCTCCACGG|frameshift_variant;ENST00000476284.1_1_22:50964673-50968379:-|nuORF;ENST00000487162.1_1_22:50967616-50968379:-|nuORF	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7723999023438	2	532.772188	1063.52982	0.45634	0.00024312	-0.7892	-0.00042046	-0.33286	-0.00017734	532.772113575693	40.442	0.3643	40.141	39.955	40.319	-0.30161					12	6	3	0	0	0	0.18147	1	15018	15018		61.09	34.822	1	18348000			29240	955	18567	18662	28105	28105					0.0005996457523451681
SEADIRGFVA	10	Unmodified	_SEADIRGFVA_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;TYMP|p.L223Pfs*54|1|0.03|ENSG00000025708|chr22:50527262-50527263|-/GTTTCTTACTGAGAATGCCTCCATTCTCAGCCCCTCCACGG|frameshift_variant;ENST00000476284.1_1_22:50964673-50968379:-|nuORF;ENST00000487162.1_1_22:50967616-50968379:-|nuORF	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MSMS	HCT116MG_D190212_S4	4	532.7723999023438	2	532.772188	1063.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.558	1	40.18	39.68	40.68	-0.37828								0	0	0	0.28951	1	14884	14884		61.09	23.116	1				29241	955	18567	18662	28106	28106					0.0005996457523451681
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	HCT116MG_D190212_S1	1	480.77191162109375	2	480.771657	959.528761	0.12234	5.8819E-05	-2.7665	-0.0013301	-2.6442	-0.0012713	480.77173279664794	23.168	0.3646	23.168	22.949	23.314	0					13	6	3	0	0	0	0.0064416	1	8225	8225		125.04	49.277	1	13127000			29242	5483	18568	18663	28107	28107					0.047377502063341126
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	HCT116MG_D190212_S2	2	480.7715759277344	2	480.771657	959.528761	0.19111	9.1883E-05	-2.933	-0.0014101	-2.7419	-0.0013182	480.77157645447977	23.658	0.41649	23.275	23.091	23.508	-0.38324					21	7	4	0	0	0	0.0041644	1	8425	8425		148.27	72.507	1	112800000			29243	5483	18568	18663	28108	28108					0.047377502063341126
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	HCT116MG_D190212_S3	3	480.77166748046875	2	480.771657	959.528761	0.14116	6.7865E-05	0.040963	1.9694E-05	0.18212	8.7559E-05	480.7716198959304	22.992	0.31227	22.973	22.844	23.156	-0.018869					8	5	2	0	0	0	0.0041644	1	8102	8102		148.27	58.867	1	37818000			29244	5483	18568	18663	28109	28109					0.047377502063341126
SEADKIKVA	9	Unmodified	_SEADKIKVA_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000466147.5_1_3:49062090-49062580:-|nuORF;ENST00000484872.1_1_3:49061926-49062670:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	HCT116MG_D190212_S4	4	480.7718200683594	2	480.771657	959.528761	0.10601	5.0968E-05	0.36892	0.00017737	0.47493	0.00022833	480.7717069815644	23.323	0.31421	23.076	22.905	23.22	-0.24775					8	5	2	0	0	0	0.0064416	1	8155	8155		125.04	49.277	1	10974000			29245	5483	18568	18663	28110	28110					0.047377502063341126
SEADPSGVA	9	Unmodified	_SEADPSGVA_					0	0	0		ENSG00000184990|ENST00000329967|SIVA1	ENSG00000184990|ENST00000329967|SIVA1	ENSG00000184990|ENST00000329967|SIVA1	MULTI-MSMS	HCT116MG_D190212_S2	2	832.3695678710938	1	832.368303	831.361027	0.69763	0.00058069	0.51225	0.00042638	1.2099	0.0010071	832.3686151467987	21.63	0.4679	21.245	21.063	21.531	-0.38503					16	8	3	0	0	0	0.0034599	2	7628	7628;7723		162.95	95.607	1	20429000			29246	5795	18569	18664	28111;28112	28111					-0.06139937058276246
SEADPSGVA	9	Unmodified	_SEADPSGVA_					0	0	0		ENSG00000184990|ENST00000329967|SIVA1	ENSG00000184990|ENST00000329967|SIVA1	ENSG00000184990|ENST00000329967|SIVA1	MULTI-MSMS	HCT116MG_D190212_S3	3	832.3688354492188	1	832.368303	831.361027	0.73238	0.00060961	0.13362	0.00011122	0.866	0.00072083	832.3682995969574	21.385	0.42269	21.403	21.219	21.641	0.018446					16	7	3	0	0	0	0.0054498	1	7445	7445		133.7	76.231	1	32062000			29247	5795	18569	18664	28113	28113					-0.06139937058276246
SEADPSGVA	9	Unmodified	_SEADPSGVA_					0	0	0		ENSG00000184990|ENST00000329967|SIVA1	ENSG00000184990|ENST00000329967|SIVA1	ENSG00000184990|ENST00000329967|SIVA1	MULTI-MSMS	HCT116MG_D190212_S4	4	832.368408203125	1	832.368303	831.361027	0.79155	0.00065886	-0.03356	-2.7935E-05	0.75799	0.00063093	832.3680902759522	21.529	0.46714	21.311	21.166	21.633	-0.21832					14	8	2	0	0	0	0.0054498	1	7435	7435		133.7	76.231	1	9942900			29248	5795	18569	18664	28114	28114					-0.06139937058276246
SEADPSGVAS	10	Unmodified	_SEADPSGVAS_					0	0	0		ENSG00000184990|ENST00000329967|SIVA1	ENSG00000184990|ENST00000329967|SIVA1	ENSG00000184990|ENST00000329967|SIVA1	MULTI-MSMS	HCT116MG_D190212_S3	3	919.4007568359375	1	919.400332	918.393055	0.76073	0.00069941	-0.085395	-7.8513E-05	0.67533	0.0006209	919.4003924184816	19.664	0.26038	19.724	19.594	19.854	0.05983					6	4	2	0	0	0	0.010831	1	6776	6776		144.35	85.671	1	2863700			29249	5795	18570	18665	28115	28115					-0.06940569375126415
SEAEAFRHK	9	Unmodified	_SEAEAFRHK_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7697143554688	2	537.76998	1073.52541	0.3873	0.00020828	-0.54401	-0.00029255	-0.1567	-8.427E-05	537.7696907621493	34.452	0.31137	34.157	34.027	34.339	-0.29419					10	5	3	0	0	0	0.19461	1	12694	12694		41.84	3.6641	1	6800900	+		29250	13798	18571	18666	28116	28116					-0.00841499847660998
SEAEAFRHK	9	Unmodified	_SEAEAFRHK_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	HCT116MG_D190212_S4	4	537.77001953125	2	537.76998	1073.52541	0.34361	0.00018478	-0.23891	-0.00012848	0.1047	5.6303E-05	537.769752202592	34.548	0.20157	34.163	34.035	34.237	-0.38558					5	3	2	0	0	0	0.24895	1	12628	12628		36.127	36.127	1	2700500	+		29251	13798	18571	18666	28117	28117					-0.00841499847660998
SEAEAFRHK	9	Unmodified	_SEAEAFRHK_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	537.76998	1073.52541	0.3873	0.00020828	-0.54401	-0.00029255	-0.1567	-8.427E-05	537.7696907621493	34.452	0.31137	34.157	34.027	34.339	-0.29419	-0.0026234	-0.00019383	NaN	41.84	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6800900	+		29252	13798	18571	18666							-0.00841499847660998
SEAEASASQA	10	Unmodified	_SEAEASASQA_					0	0	0		nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	nc|ENSG00000183873|Q14524-3|SCN5A	nc|ENSG00000183873|Q14524-3|SCN5A	MSMS	HCT116MG_D190212_S4	4	475.7060546875	2	475.706711	949.398869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.652	1	44.278	43.778	44.778	-0.37326								0	0	0	0.90475	1	16457	16457		14.838	4.7643	1				29253	5747	18572	18667	28118	28118					-0.07785470863473165
SEAEDMSVP	9	Unmodified	_SEAEDMSVP_					0	0	0		nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-3|WASHC2C	nc|ENSG00000172661|Q9Y4E1-3|WASHC2C	MSMS	HCT116MG_D190212_S4	4	482.70050048828125	2	482.70004	963.385527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.668	1	44.295	43.795	44.795	-0.37326								0	0	0	0.3563	1	16464	16464		36.044	3.9272	1				29254	5255	18573	18668	28119	28119					-0.09763044967064616
SEAEDPEPEEP	11	Unmodified	_SEAEDPEPEEP_					0	0	0			REV__BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	REV__BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	614.849365234375	2	614.74623	1227.47791	0.16541	0.00010169	2.4221	0.001489	2.5875	0.0015906	614.7474493952747	38.027	0.25821	37.934	37.805	38.063	-0.09301					6	4	2	0	0	0	0.35938	1	14246	14246		11.495	3.8858	1	5814600	+		29255	10033	18574	18669	28120	28120					-0.12673288419864548
SEAEDPEPEEP	11	Unmodified	_SEAEDPEPEEP_					0	0	0			REV__BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	REV__BAZ2A|p.K1507Qfs*26|1|0.27|ENSG00000076108|chr12:56600770-56600771|-/G|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	614.74623	1227.47791	0.40953	0.00025176	1.6969	0.0010432	2.1064	0.0012949	614.7473261052254	38.234	0.15545	37.933	37.833	37.989	-0.30137	-0.00056556	-0.0003208	NaN	11.495	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2019100	+		29256	10033	18574	18669							-0.12673288419864548
SEAEFLARTA	10	Unmodified	_SEAEFLARTA_					0	0	0		ENSG00000122085|ENST00000391980|MTERF4	ENSG00000122085|ENST00000391980|MTERF4	ENSG00000122085|ENST00000391980|MTERF4	MSMS	HCT116MG_D190212_S1	1	547.77783203125	2	547.77747	1093.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.945	1	36.945	36.445	37.445	0								0	0	0	0.77799	1	13788	13788		31.636	10.099	1				29257	2750	18575	18670	28121	28121					-0.0026405277033063612
SEAEFVLFC	9	Unmodified	_SEAEFVLFC_					0	0	0		IL18RAP|p.E40A|1|0.07|ENSG00000115607|chr2:102423859-102423859|A/C|missense_variant	IL18RAP|p.E40A|1|0.07|ENSG00000115607|chr2:102423859-102423859|A/C|missense_variant	IL18RAP|p.E40A|1|0.07|ENSG00000115607|chr2:102423859-102423859|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1044.4691162109375	1	1044.47066	1043.46338	0.59484	0.00062129	-0.58811	-0.00061427	0.0067273	7.0264E-06	1044.4700111680106	45.433	0.41765	45.122	44.835	45.253	-0.31094					13	7	3	0	0	0	0.24973	1	16999	16999		36.044	0	1	8800900			29258	9236	18576	18671	28122	28122					-0.056609873110119224
SEAEFVLFC	9	Unmodified	_SEAEFVLFC_					0	0	0		IL18RAP|p.E40A|1|0.07|ENSG00000115607|chr2:102423859-102423859|A/C|missense_variant	IL18RAP|p.E40A|1|0.07|ENSG00000115607|chr2:102423859-102423859|A/C|missense_variant	IL18RAP|p.E40A|1|0.07|ENSG00000115607|chr2:102423859-102423859|A/C|missense_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1044.47066	1043.46338	0.64762	0.00067642	0.18284	0.00019098	0.83047	0.0008674	1044.4707510797507	45.49	0.30901	45.117	44.936	45.245	-0.37266	-0.0024699	5.3348E-05	NaN	36.044	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6347200			29259	9236	18576	18671							-0.056609873110119224
SEAEIFYNA	9	Unmodified	_SEAEIFYNA_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	HCT116MG_D190212_S2	2	1044.4691162109375	1	1043.46802	1042.46074	0.83096	0.00086708	-1.7466	-0.0018226	-0.91568	-0.00095548	1043.4675166105949	45.194	0.62439	45.101	44.735	45.359	-0.092472					25	11	3	0	0	0	0.031005	1	17181	17181		85.357	49.313	1	63754000			29260	5767	18577	18672	28123	28123					-0.05879119444330172
SEAEIFYNA	9	Unmodified	_SEAEIFYNA_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	HCT116MG_D190212_S2	2	522.2378540039062	2	522.237647	1042.46074	0.42169	0.00022022	0.0066318	3.4634E-06	0.42832	0.00022369	522.2375874442823	45.198	0.5198	45.106	44.891	45.411	-0.092472					13	9	2	0	0	0	0.023611	1	17194	17194		92.822	50.983	1	34452000			29261	5767	18577	18672	28124	28124					-0.05879119444330172
SEAEIFYNA	9	Unmodified	_SEAEIFYNA_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2377319335938	2	522.237647	1042.46074	0.3577	0.00018681	0.050062	2.6144E-05	0.40776	0.00021295	522.2376276572719	45.433	0.4694	45.122	44.939	45.409	-0.31094					19	8	3	0	0	0	0.012168	2	17012	17012;17078		108	61.976	1	32747000			29262	5767	18577	18672	28125;28126	28125					-0.05879119444330172
SEAEIFYNA	9	Unmodified	_SEAEIFYNA_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	HCT116MG_D190212_S4	4	522.2372436523438	2	522.237647	1042.46074	0.38937	0.00020334	-0.13366	-6.9803E-05	0.25571	0.00013354	522.237492839029	45.49	0.35848	45.117	44.936	45.294	-0.37266					16	6	3	0	0	0	0.016134	1	16779	16779		100.37	48.103	1	18982000			29263	5767	18577	18672	28127	28127					-0.05879119444330172
SEAEIQAKA	9	Unmodified	_SEAEIQAKA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	473.74566650390625	2	473.745639	945.476725	0.1742	8.2528E-05	0.084986	4.0262E-05	0.25919	0.00012279	473.7456108839984	21.994	0.36457	21.609	21.375	21.739	-0.38503					13	6	3	0	0	0	0.0055242	1	7773	7773		133.05	51.162	1	79235000			29264	5492	18578	18673	28128	28128					0.0018058679256682808
SEAEIQAKA	9	Unmodified	_SEAEIQAKA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	946.4839477539062	1	946.484002	945.476725	0.59823	0.00056622	-0.63138	-0.00059759	-0.033153	-3.1379E-05	946.4834705385351	21.994	0.26066	21.609	21.479	21.739	-0.38503					5	4	2	0	0	0	0.0051419	1	7777	7777		136.39	58.243	1	13187000			29265	5492	18578	18673	28129	28129					0.0018058679256682808
SEAEIQAKA	9	Unmodified	_SEAEIQAKA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	473.7451477050781	2	473.745639	945.476725	0.14567	6.901E-05	-0.43315	-0.0002052	-0.28748	-0.00013619	473.7455849344755	21.438	0.63259	21.456	21.219	21.851	0.018446					19	11	2	0	0	0	0.0058997	1	7456	7456		129.77	47.243	1	52645000			29266	5492	18578	18673	28130	28130					0.0018058679256682808
SEAEIQAKA	9	Unmodified	_SEAEIQAKA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	946.484619140625	1	946.484002	945.476725	0.6312	0.00059742	0.15069	0.00014262	0.78189	0.00074005	946.4837739920144	21.438	0.26459	21.456	21.271	21.535	0.018446					6	4	2	0	0	0	0.0080847	1	7481	7481		118.07	46.935	1	3392800			29267	5492	18578	18673	28131	28131					0.0018058679256682808
SEAEIQAKA	9	Unmodified	_SEAEIQAKA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S4	4	473.7454833984375	2	473.745639	945.476725	0.38433	0.00018208	-0.18979	-8.9911E-05	0.19455	9.2165E-05	473.74549989369035	21.719	0.36316	21.5	21.322	21.685	-0.21832					12	6	3	0	0	0	0.0058997	1	7504	7504		129.77	47.882	1	17775000			29268	5492	18578	18673	28132	28132					0.0018058679256682808
SEAEKVYIV	9	Unmodified	_SEAEKVYIV_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MULTI-MSMS	HCT116MG_D190212_S1	1	519.7814331054688	2	519.279315	1036.54408	0.040696	2.1133E-05	0.8676	0.00045053	0.90829	0.00047166	519.2793814824681	38.83	0.51892	38.83	38.592	39.111	0					17	9	3	0	0	0	0.011132	1	14555	14555		110.55	56.72	1	53518000			29269	1326	18579	18674	28133	28133					0.02726617003509091
SEAEKVYIV	9	Unmodified	_SEAEKVYIV_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MULTI-MSMS	HCT116MG_D190212_S2	2	519.279541015625	2	519.279315	1036.54408	0.26222	0.00013617	-0.00043414	-2.2544E-07	0.26179	0.00013594	519.2792653690941	38.879	0.46604	38.794	38.597	39.063	-0.084618					19	8	4	0	0	0	0.011132	1	14611	14611		110.55	52.831	1	233280000			29270	1326	18579	18674	28134	28134					0.02726617003509091
SEAEKVYIV	9	Unmodified	_SEAEKVYIV_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MULTI-MSMS	HCT116MG_D190212_S2	2	1037.54833984375	1	1037.55135	1036.54408	0.6008	0.00062336	-0.19151	-0.0001987	0.40929	0.00042466	1037.5508192274474	38.864	0.25849	38.78	38.65	38.909	-0.084618					7	4	2	0	0	0	0.030039	1	14623	14623		86.332	36.399	1	40601000			29271	1326	18579	18674	28135	28135					0.02726617003509091
SEAEKVYIV	9	Unmodified	_SEAEKVYIV_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MULTI-MSMS	HCT116MG_D190212_S3	3	519.78125	2	519.279315	1036.54408	0.26621	0.00013824	0.48896	0.00025391	0.75517	0.00039214	519.2795204597137	39.147	0.36973	38.846	38.664	39.034	-0.30137					12	6	2	0	0	0	0.064006	2	14548	14531;14548		67.838	13.065	1	42836000			29272	1326	18579	18674	28136;28137	28137					0.02726617003509091
SEAEKVYIV	9	Unmodified	_SEAEKVYIV_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MULTI-MSMS	HCT116MG_D190212_S4	4	519.780517578125	2	519.279315	1036.54408	0.32314	0.0001678	0.51443	0.00026713	0.83757	0.00043493	519.2796345561743	39.272	0.28342	38.892	38.731	39.015	-0.38055					9	6	2	0	0	0	0.30874	1	14439	14439		29.841	9.426	1	5219700			29273	1326	18579	18674	28138	28138					0.02726617003509091
SEAEPGRGA	9	Unmodified	_SEAEPGRGA_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	HCT116MG_D190212_S2	2	437.2068786621094	2	437.206681	872.398809	-0.068294	-2.9859E-05	0.055916	2.4447E-05	-0.012378	-5.4119E-06	437.2067470287272	15.461	0.41669	15.134	14.967	15.384	-0.32684					10	7	2	0	0	0	0.023778	1	5149	5149		92.653	41.798	1	2829500			29274	6353	18580	18675	28139	28139					-0.04249426072806273
SEAERRPPP	9	Unmodified	_SEAERRPPP_					0	0	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;TCF7L2|p.K341Rfs*10|1|0.49|ENSG00000148737|chr10:113151741-113151741|A/-|frameshift_variant;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;TCF7L2|p.L200Sfs*25|4|0.36|ENSG00000148737|chr10:113141225-113141225|C/-|frameshift_variant;TCF7L2|p.H195Lfs*15|1|0.1|ENSG00000148737|chr10:113141214-113141215|-/T|frameshift_variant	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MULTI-MSMS	HCT116MG_D190212_S1	1	519.7700805664062	2	519.76998	1037.52541	0.43623	0.00022674	-0.13729	-7.136E-05	0.29894	0.00015538	519.7698726838084	15.145	2.8653	15.145	14.598	17.463	0					106	54	4	0	0	0	0.11023	5	5137	4916;5137;5372;5593;5639		56.177	35.723	1	35156000			29275	4033	18581	18676	28140;28141;28142;28143;28144	28141					0.008145001523189421
SEAERRPPP	9	Unmodified	_SEAERRPPP_					0	0	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;TCF7L2|p.K341Rfs*10|1|0.49|ENSG00000148737|chr10:113151741-113151741|A/-|frameshift_variant;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;TCF7L2|p.L200Sfs*25|4|0.36|ENSG00000148737|chr10:113141225-113141225|C/-|frameshift_variant;TCF7L2|p.H195Lfs*15|1|0.1|ENSG00000148737|chr10:113141214-113141215|-/T|frameshift_variant	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7699584960938	2	519.76998	1037.52541	0.17443	9.0666E-05	0.043992	2.2866E-05	0.21843	0.00011353	519.769976323245	11.459	1.3624	11.178	10.587	11.95	-0.28186					115	53	3	0	0	0	0.14171	1	3706	3706		49.933	29.479	1	3494900			29276	4033	18581	18676	28145	28145					0.008145001523189421
SEAERRPPP	9	Unmodified	_SEAERRPPP_					0	0	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;TCF7L2|p.K341Rfs*10|1|0.49|ENSG00000148737|chr10:113151741-113151741|A/-|frameshift_variant;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;TCF7L2|p.L200Sfs*25|4|0.36|ENSG00000148737|chr10:113141225-113141225|C/-|frameshift_variant;TCF7L2|p.H195Lfs*15|1|0.1|ENSG00000148737|chr10:113141214-113141215|-/T|frameshift_variant	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7850341796875	2	519.76998	1037.52541	0.19392	0.00010079	0.05067	2.6337E-05	0.24459	0.00012713	519.7700057879997	15.215	3.3389	14.888	13.975	17.314	-0.32684					198	64	5	0	0	0	0.0201	11	5554	4698;4732;4956;5187;5356;5421;5518;5554;5589;5719;5983		96.367	61.965	1	135570000			29277	4033	18581	18676	28146;28147;28148;28149;28150;28151;28152;28153;28154;28155;28156	28153					0.008145001523189421
SEAERRPPP	9	Unmodified	_SEAERRPPP_					0	0	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;TCF7L2|p.K341Rfs*10|1|0.49|ENSG00000148737|chr10:113151741-113151741|A/-|frameshift_variant;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;TCF7L2|p.L200Sfs*25|4|0.36|ENSG00000148737|chr10:113141225-113141225|C/-|frameshift_variant;TCF7L2|p.H195Lfs*15|1|0.1|ENSG00000148737|chr10:113141214-113141215|-/T|frameshift_variant	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MULTI-MSMS	HCT116MG_D190212_S2	2	1038.5322265625	1	1038.53268	1037.52541	0.55018	0.00057138	-0.012043	-1.2507E-05	0.53814	0.00055888	1038.5325514359417	15.111	1.0425	14.784	14.55	15.592	-0.32684					24	19	2	0	0	0	0.0096523	1	5012	5012		114.2	59.428	1	2017500			29278	4033	18581	18676	28157	28157					0.008145001523189421
SEAERRPPP	9	Unmodified	_SEAERRPPP_					0	0	0		nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;TCF7L2|p.K485Sfs*23|2|0.35|ENSG00000148737|chr10:113165558-113165558|A/-|frameshift_variant;ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;TCF7L2|p.K341Rfs*10|1|0.49|ENSG00000148737|chr10:113151741-113151741|A/-|frameshift_variant;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;TCF7L2|p.L200Sfs*25|4|0.36|ENSG00000148737|chr10:113141225-113141225|C/-|frameshift_variant;TCF7L2|p.H195Lfs*15|1|0.1|ENSG00000148737|chr10:113141214-113141215|-/T|frameshift_variant	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	nc|ENSG00000148737|Q9NQB0-9|TCF7L2	MSMS	HCT116MG_D190212_S3	3	519.7699584960938	2	519.76998	1037.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.487	1	14.567	14.067	15.067	0.079683								0	0	0	0.46109	1	4667	4667		30.637	18.105	1				29279	4033	18581	18676	28158	28158					0.008145001523189421
SEAETQQPP	9	Unmodified	_SEAETQQPP_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MSMS	HCT116MG_D190212_S3	3	493.72467041015625	2	493.724904	985.435254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.908	1	18.977	18.477	19.477	0.069159								0	0	0	0.081406	1	6451	6451		61.357	30.721	1				29280	1164	18582	18677	28159	28159					-0.05804593966763605
SEAETQQPP	9	Unmodified	_SEAETQQPP_					0	0	0		ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	ENSG00000065978|ENST00000321358|YBX1	MSMS	HCT116MG_D190212_S4	4	493.7251281738281	2	493.724904	985.435254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.129	1	18.943	18.443	19.443	-0.18674								0	0	0	0.76603	1	6468	6468		14.838	0.93222	1				29281	1164	18582	18677	28160	28160					-0.05804593966763605
SEAEYQRQQ	9	Unmodified	_SEAEYQRQQ_					0	0	0		ENSG00000158552|ENST00000289528|ZFAND2B;ENST00000475533.1_1_2:220071990-220074025:+|nuORF	ENSG00000158552|ENST00000289528|ZFAND2B	ENSG00000158552|ENST00000289528|ZFAND2B	MULTI-SECPEP	HCT116MG_D190212_S1	1	569.2859497070312	2	569.759809	1137.50507	0.49368	0.00028128	0.034358	1.9576E-05	0.52804	0.00030086	569.759858337405	17.762	0.52118	17.762	17.568	18.089	0					14	9	2	0	0	0	0.22781	1	6051	6051		7.2892	0	1	1584700			29282	4379	18583	18678	28161	28161					-0.05818715298141797
SEAEYQRQQ	9	Unmodified	_SEAEYQRQQ_					0	0	0		ENSG00000158552|ENST00000289528|ZFAND2B;ENST00000475533.1_1_2:220071990-220074025:+|nuORF	ENSG00000158552|ENST00000289528|ZFAND2B	ENSG00000158552|ENST00000289528|ZFAND2B	MULTI-SECPEP	HCT116MG_D190212_S2	2	569.286376953125	2	569.759809	1137.50507	0.32231	0.00018364	0.046847	2.6691E-05	0.36916	0.00021033	569.7597572839967	18.053	0.78312	17.697	17.18	17.963	-0.35647					29	14	3	0	0	0	0.23301	1	6288	6288		10.824	4.6181	1	7238100			29283	4379	18583	18678	28162	28162					-0.05818715298141797
SEAFHLIKA	9	Unmodified	_SEAFHLIKA_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;ENST00000475407.5_2_9:127642811-127683993:-|nuORF	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MSMS	HCT116MG_D190212_S1	1	508.28192138671875	2	508.282192	1014.54983	0.42656	0.00021681	-0.24954	-0.00012683	0.17702	8.9978E-05	508.281828210327	37.734	0.36467	37.734	37.499	37.863	0					10	6	3	0	0	0	0.0080847	1	14113	14113		118.07	79.893	1	19728000			29284	3447	18584	18679	28163	28163					0.04313760305853975
SEAFHLIKA	9	Unmodified	_SEAFHLIKA_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;ENST00000475407.5_2_9:127642811-127683993:-|nuORF	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MSMS	HCT116MG_D190212_S2	2	508.28253173828125	2	508.282192	1014.54983	0.15289	7.7709E-05	0.65049	0.00033063	0.80337	0.00040834	508.28248414375963	37.774	0.30909	37.672	37.538	37.848	-0.10222					12	5	3	0	0	0	0.0080847	1	14184	14184		118.07	79.893	1	90894000			29285	3447	18584	18679	28164	28164					0.04313760305853975
SEAFHLIKA	9	Unmodified	_SEAFHLIKA_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;ENST00000475407.5_2_9:127642811-127683993:-|nuORF	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MSMS	HCT116MG_D190212_S3	3	508.28216552734375	2	508.282192	1014.54983	0.33449	0.00017002	-0.05084	-2.5841E-05	0.28365	0.00014418	508.28221712024674	38.005	0.18179	37.704	37.6	37.781	-0.30137					9	5	2	0	0	0	0.0077497	1	14058	14058		118.89	84.493	1	13442000			29286	3447	18584	18679	28165	28165					0.04313760305853975
SEAFHNYMNAA	11	Unmodified	_SEAFHNYMNAA_					0	0	0		nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-5|RTN3;nc|ENSG00000133318|O95197-4|RTN3	nc|ENSG00000133318|O95197-7|RTN3	nc|ENSG00000133318|O95197-7|RTN3	MULTI-MSMS	HCT116MG_D190212_S2	2	628.26806640625	2	627.764037	1253.51352	0.84337	0.00052943	2.0928	0.0013138	2.9361	0.0018432	628.267079188209	36.097	0.31053	35.969	35.812	36.122	-0.12799					12	5	3	0	0	0	0.71643	1	13509	13509		15.739	10.007	1	21356000			29287	3237	18585	18680	28166	28166					-0.10309484653157597
SEAFHNYMNAA	11	Unmodified	_SEAFHNYMNAA_					0	0	0		nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-5|RTN3;nc|ENSG00000133318|O95197-4|RTN3	nc|ENSG00000133318|O95197-7|RTN3	nc|ENSG00000133318|O95197-7|RTN3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	627.764037	1253.51352	0.74962	0.00047058	1.9448	0.0012209	2.6945	0.0016915	628.2674795600965	36.085	0.4231	36.085	35.942	36.365	0	0.058072	-9.9131E-05	NaN	15.739	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7787200			29288	3237	18585	18680							-0.10309484653157597
SEAFSVASA	9	Unmodified	_SEAFSVASA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S1	1	868.4044189453125	1	868.404689	867.397412	0.67378	0.00058512	0.17263	0.00014992	0.84642	0.00073503	868.4047050707385	36.964	0.25933	36.964	36.835	37.094	0					7	4	2	0	0	0	0.0046012	2	13806	13806;13825		141.83	60.214	1	18345000			29289	2613	18586	18681	28167;28168	28167					-0.041590601615666856
SEAFSVASA	9	Unmodified	_SEAFSVASA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	868.4044799804688	1	868.404689	867.397412	0.76368	0.00066318	-0.56647	-0.00049193	0.19721	0.00017126	868.4043209885641	37.052	0.30921	36.937	36.757	37.066	-0.11478					8	5	2	0	0	0	0.0063744	1	13887	13887		125.62	47.475	1	36617000			29290	2613	18586	18681	28169	28169					-0.041590601615666856
SEAFSVASA	9	Unmodified	_SEAFSVASA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S3	3	868.4054565429688	1	868.404689	867.397412	0.84512	0.0007339	-0.0016208	-1.4075E-06	0.8435	0.0007325	868.4045582637937	37.252	0.46833	36.951	36.717	37.185	-0.30137					20	8	4	0	0	0	0.0063744	1	13774	13774		125.62	47.475	1	51058000			29291	2613	18586	18681	28170	28170					-0.041590601615666856
SEAFSVASA	9	Unmodified	_SEAFSVASA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S4	4	868.4053344726562	1	868.404689	867.397412	0.672	0.00058356	-0.065799	-5.714E-05	0.6062	0.00052642	868.4046128082149	37.297	0.35357	36.913	36.726	37.079	-0.3839					14	6	3	0	0	0	0.0063744	1	13680	13680		125.62	44.012	1	21937000			29292	2613	18586	18681	28171	28171					-0.041590601615666856
SEAGEGGY	8	Unmodified	_SEAGEGGY_					0	0	0			REV__ENST00000465617.1_1_10:12123569-12136179:+|nuORF	REV__ENST00000465617.1_1_10:12123569-12136179:+|nuORF	MSMS	HCT116MG_D190212_S3	3	385.1534118652344	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.583	1	64.382	63.882	64.882	-0.2009								0	0	0	0.8837	1	24559	24559		0.79363	0	1		+		29293	13682	18587	18682	28172	28172					-0.1008018163813631
SEAGPGPRP	9	Unmodified	_SEAGPGPRP_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENST00000493177.1_1_2:48010357-48011729:+|nuORF;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	434.2197265625	2	434.219591	866.42463	-0.082702	-3.5911E-05	0.29164	0.00012664	0.20894	9.0726E-05	434.2196924946734	19.157	0.46879	19.157	18.819	19.287	0					16	8	2	0	0	0	0.010834	1	6568	6568		111.29	22.383	1	4866500			29294	2499;9344	18588	18683	28173	28173					-0.013925318305268775
SEAGPGPRP	9	Unmodified	_SEAGPGPRP_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENST00000493177.1_1_2:48010357-48011729:+|nuORF;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	434.2194519042969	2	434.219591	866.42463	0.0067566	2.9339E-06	0.1173	5.0934E-05	0.12406	5.3868E-05	434.2195688546301	19.7	0.8842	19.324	18.622	19.506	-0.37503					29	16	2	0	0	0	0.0077497	1	6714	6714		118.89	22.61	1	45760000			29295	2499;9344	18588	18683	28174	28174					-0.013925318305268775
SEAGPGPRP	9	Unmodified	_SEAGPGPRP_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENST00000493177.1_1_2:48010357-48011729:+|nuORF;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	867.4325561523438	1	867.431906	866.42463	0.81407	0.00070615	1.8231	0.0015814	2.6372	0.0022876	867.4317168250816	19.71	0.62436	19.335	18.83	19.455	-0.37503					24	11	4	0	0	0	0.0044301	1	6796	6796		144.35	43.979	1	10369000			29296	2499;9344	18588	18683	28175	28175					-0.013925318305268775
SEAGPGPRP	9	Unmodified	_SEAGPGPRP_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENST00000493177.1_1_2:48010357-48011729:+|nuORF;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	434.21954345703125	2	434.219591	866.42463	0.14093	6.1193E-05	-0.044591	-1.9362E-05	0.096336	4.1831E-05	434.21948080068324	18.848	1.1452	18.917	18.146	19.291	0.069159					39	21	2	0	0	0	0.0077497	2	6485	6260;6485		118.89	33.138	1	33450000			29297	2499;9344	18588	18683	28176;28177	28177					-0.013925318305268775
SEAGPGPRP	9	Unmodified	_SEAGPGPRP_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENST00000493177.1_1_2:48010357-48011729:+|nuORF;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	867.4329833984375	1	867.431906	866.42463	0.77082	0.00066863	0.035666	3.0938E-05	0.80648	0.00069957	867.4319133718451	18.864	0.67685	18.933	18.458	19.135	0.069157					18	12	2	0	0	0	0.0054498	1	6403	6403		133.7	28.903	1	4631700			29298	2499;9344	18588	18683	28178	28178					-0.013925318305268775
SEAGPGPRP	9	Unmodified	_SEAGPGPRP_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENST00000493177.1_1_2:48010357-48011729:+|nuORF;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	434.2196960449219	2	434.219591	866.42463	0.17871	7.7599E-05	-0.12091	-5.2503E-05	0.057796	2.5096E-05	434.2194767634232	19.186	0.83187	18.999	18.401	19.233	-0.18674					36	15	3	0	0	0	0.023938	1	6349	6349		92.491	17.562	1	9463500			29299	2499;9344	18588	18683	28179	28179					-0.013925318305268775
SEAGPPRPG	9	Unmodified	_SEAGPPRPG_					0	0	0			REV__KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant	REV__KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	434.2198181152344	2	434.219591	866.42463	0.17871	7.7599E-05	-0.12091	-5.2503E-05	0.057796	2.5096E-05	434.2194767634232	19.186	0.83187	18.999	18.401	19.233	-0.18674					36	15	3	0	0	0	0.16144	1	6583	6583		46.021	2.1627	1	9463500	+		29300	11993	18589	18684	28180	28180					-0.013925318305155088
SEAGSSRSQE	10	Unmodified	_SEAGSSRSQE_					0	0	0		nc|ENSG00000134030|O43310-2|CTIF;ENSG00000134030|ENST00000256413|CTIF;CTIF|p.P82Hfs*77|2|0.36|ENSG00000134030|chr18:48636672-48636672|C/-|frameshift_variant	nc|ENSG00000134030|O43310-2|CTIF	nc|ENSG00000134030|O43310-2|CTIF	MSMS	HCT116MG_D190212_S4	4	519.2308349609375	2	519.228342	1036.44213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.445	1	39.065	38.565	39.565	-0.38055								0	0	0	0.87318	1	14493	14493		19.362	0.98885	1				29301	3260	18590	18685	28181	28181					-0.07463281086188545
SEAHLPSG	8	Unmodified	_SEAHLPSG_					0	0	0		ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	MULTI-MSMS	HCT116MG_D190212_S3	3	797.3804321289062	1	797.378808	796.371532	0.86621	0.00069069	-0.14673	-0.000117	0.71948	0.0005737	797.3786286449753	29.277	2.7076	29.055	27.431	30.139	-0.22195					70	51	2	0	0	0	0.66848	1	10539	10539		26.341	0	1	4567300			29302	1950	18591	18686	28182	28182					-0.03479909613190557
SEAKFLGSGT	10	Unmodified	_SEAKFLGSGT_					0	0	0		ENSG00000012232|ENST00000220562|EXTL3	ENSG00000012232|ENST00000220562|EXTL3	ENSG00000012232|ENST00000220562|EXTL3	MULTI-MSMS	HCT116MG_D190212_S3	3	498.75323486328125	2	498.753464	995.492375	0.43573	0.00021732	-0.37627	-0.00018767	0.059459	2.9655E-05	498.75318802479796	34.14	0.26033	33.845	33.715	33.975	-0.29419					7	4	2	0	0	0	0.15757	1	12567	12567		63.227	11.598	1	10633000			29303	906	18592	18687	28183	28183					-0.0055512669038080276
SEAKFLGSGT	10	Unmodified	_SEAKFLGSGT_					0	0	0		ENSG00000012232|ENST00000220562|EXTL3	ENSG00000012232|ENST00000220562|EXTL3	ENSG00000012232|ENST00000220562|EXTL3	MULTI-MSMS	HCT116MG_D190212_S4	4	498.7535705566406	2	498.753464	995.492375	0.45571	0.00022729	-0.25037	-0.00012487	0.20534	0.00010241	498.7533844315831	34.291	0.20774	33.906	33.724	33.932	-0.38558					6	3	2	0	0	0	0.47325	1	12517	12517		37.075	4.289	1	4282500			29304	906	18592	18687	28184	28184					-0.0055512669038080276
SEAKPAAVA	9	Unmodified	_SEAKPAAVA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	422.2322082519531	2	422.232168	842.449782	-0.1216	-5.1345E-05	0.15485	6.5382E-05	0.033243	1.4036E-05	422.2321805381259	18.971	0.20898	18.601	18.471	18.68	-0.3695					9	3	3	0	0	0	0.17622	1	6578	6578		43.772	11.467	1	11152000			29305	3460	18593	18688	28185	28185					0.022255229720371972
SEAKPAAVA	9	Unmodified	_SEAKPAAVA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	HCT116MG_D190212_S3	3	422.2320251464844	2	422.232168	842.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.065	1	18.141	17.641	18.641	0.076334								0	0	0	0.38321	1	6111	6111		34.402	7.5181	1				29306	3460	18593	18688	28186	28186					0.022255229720371972
SEAKPAAVA	9	Unmodified	_SEAKPAAVA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	HCT116MG_D190212_S4	4	422.23211669921875	2	422.232168	842.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.364	1	18.183	17.683	18.683	-0.18052								0	0	0	0.69648	1	6158	6158		19.257	1.122	1				29307	3460	18593	18688	28187	28187					0.022255229720371972
SEAKPAAVAA	10	Unmodified	_SEAKPAAVAA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S1	1	457.7508239746094	2	457.750724	913.486896	-0.011954	-5.4718E-06	0.20917	9.5746E-05	0.19721	9.0275E-05	457.7508878166861	19.574	0.20857	19.574	19.443	19.652	0					6	3	2	0	0	0	0.24395	1	6801	6801		55.503	19.376	1	7178400			29308	3460	18594	18689	28188	28188					0.026691945177958587
SEAKPAAVAA	10	Unmodified	_SEAKPAAVAA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S2	2	914.4956665039062	1	914.494172	913.486896	0.59838	0.00054722	0.26295	0.00024046	0.86133	0.00078768	914.4943293164498	20.114	0.20738	19.739	19.61	19.817	-0.37503					6	3	2	0	0	0	0.04605	1	7032	7032		90.135	37.867	1	16101000			29309	3460	18594	18689	28189	28189					0.026691945177958587
SEAKPAAVAA	10	Unmodified	_SEAKPAAVAA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	HCT116MG_D190212_S2	2	457.7507629394531	2	457.750724	913.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.114	1	19.739	19.239	20.239	-0.37503								0	0	0	0.20883	1	7014	7014		67.838	18.284	1				29310	3460	18594	18689	28190	28190					0.026691945177958587
SEAKPAAVAA	10	Unmodified	_SEAKPAAVAA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S3	3	457.75091552734375	2	457.750724	913.486896	0.31851	0.0001458	0.10989	5.0303E-05	0.4284	0.0001961	457.7506557397656	19.25	0.36433	19.31	19.178	19.542	0.059828					16	6	4	0	0	0	0.086065	1	6593	6593		76.825	27.27	1	25898000			29311	3460	18594	18689	28191	28191					0.026691945177958587
SEAKPAAVAA	10	Unmodified	_SEAKPAAVAA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S3	3	914.4950561523438	1	914.494172	913.486896	0.69425	0.00063488	0.020535	1.878E-05	0.71478	0.00065366	914.4941569856612	19.248	0.26015	19.307	19.178	19.438	0.05983					6	4	2	0	0	0	0.24695	1	6622	6622		55.235	18.728	1	2936300			29312	3460	18594	18689	28192	28192					0.026691945177958587
SEAKPAAVAA	10	Unmodified	_SEAKPAAVAA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	HCT116MG_D190212_S4	4	457.7509460449219	2	457.750724	913.486896	0.16506	7.5556E-05	0.12486	5.7154E-05	0.28992	0.00013271	457.7507632564247	19.587	0.2598	19.393	19.226	19.486	-0.19367					8	4	2	0	0	0	0.26742	1	6645	6645		53.404	9.6316	1	5095900			29313	3460	18594	18689	28193	28193					0.026691945177958587
SEAKQMPRA	9	Unmodified	_SEAKQMPRA_					0	0	0		LRRC41|p.I419Yfs*85|1|0.28|ENSG00000132128|chr1:46285602-46285603|-/A|frameshift_variant;LRRC41|p.E434Gfs*70|1|0.33|ENSG00000132128|chr1:46285556-46285557|-/C|frameshift_variant;nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	LRRC41|p.I419Yfs*85|1|0.28|ENSG00000132128|chr1:46285602-46285603|-/A|frameshift_variant	LRRC41|p.I419Yfs*85|1|0.28|ENSG00000132128|chr1:46285602-46285603|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2611083984375	2	509.260933	1016.50731	0.068398	3.4832E-05	0.59812	0.0003046	0.66652	0.00033943	509.261140720145	18.345	0.26144	17.982	17.799	18.061	-0.36325					7	4	2	0	0	0	0.10244	1	6330	6330		57.722	33.701	1	6875600			29314	3168	18595	18690	28194	28194					-0.0002795809402869054
SEAKRPEP	8	Unmodified	_SEAKRPEP_					0	0	0		RAD18|p.T371Nfs*9|1|0.08|ENSG00000070950|chr3:8902436-8902437|-/T|frameshift_variant;ENSG00000070950|ENST00000264926|RAD18	RAD18|p.T371Nfs*9|1|0.08|ENSG00000070950|chr3:8902436-8902437|-/T|frameshift_variant	RAD18|p.T371Nfs*9|1|0.08|ENSG00000070950|chr3:8902436-8902437|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	457.2416687011719	2	457.240524	912.466495	-0.056706	-2.5928E-05	0.14169	6.4789E-05	0.084989	3.886E-05	457.2406711510081	18.205	0.57458	17.849	17.65	18.224	-0.35647					15	10	2	0	0	0	0.64404	1	6232	6232		28.487	0	1	9277500			29315	1247	18596	18691	28195	28195					0.0067602385800000775
SEALEPLNEPK	11	Unmodified	_SEALEPLNEPK_					0	0	0			REV__HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant	REV__HECW2|p.V922*|1|0.28|ENSG00000138411|chr2:196306539-196306539|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	614.8206787109375	2	613.816793	1225.61903	0.8227	0.00050499	-0.42959	-0.00026369	0.39311	0.0002413	613.8165008064917	34.027	0.31163	33.643	33.466	33.777	-0.38426					13	5	3	0	0	0	0.69464	1	12401	12401		23.79	3.3752	1	17720000	+		29316	12222	18597	18692	28196	28196					0.015247547440822018
SEALPCPGKET	11	Unmodified	_SEALPCPGKET_					0	0	0		ANKRD33|p.G178Vfs*7|1|0.41|ENSG00000167612|chr12:51890849-51890849|G/-|frameshift_variant;ENSG00000167612|ENST00000301190|ANKRD33	ANKRD33|p.G178Vfs*7|1|0.41|ENSG00000167612|chr12:51890849-51890849|G/-|frameshift_variant	ANKRD33|p.G178Vfs*7|1|0.41|ENSG00000167612|chr12:51890849-51890849|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	566.7744140625	2	566.271164	1130.52777	0.30372	0.00017199	3.1344	0.0017749	3.4381	0.0019469	566.273307361384	14.873	0.2605	14.554	14.453	14.714	-0.31952					6	4	2	0	0	0	0.74191	1	4944	4944		2.7352	0.67545	1	933290			29317	139	18598	18693	28197	28197					-0.03226832224891041
SEALPSDIAA	10	Unmodified	_SEALPSDIAA_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S2	2	973.48291015625	1	973.483667	972.476391	0.53448	0.00052031	-0.27445	-0.00026718	0.26003	0.00025314	973.4833092793128	38.302	0.31019	38.209	38.011	38.322	-0.09301					10	5	2	0	0	0	0.042873	1	14372	14372		92.491	24.411	1	24610000			29318	1532	18599	18694	28198	28198					-0.010948329272878254
SEALPSDIAA	10	Unmodified	_SEALPSDIAA_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S3	3	973.4834594726562	1	973.483667	972.476391	0.43725	0.00042565	-0.20455	-0.00019913	0.23269	0.00022652	973.4834111115542	38.489	0.36351	38.188	37.989	38.352	-0.30137					10	6	2	0	0	0	0.076419	1	14263	14263		78.728	18.654	1	4763800			29319	1532	18599	18694	28199	28199					-0.010948329272878254
SEALPSDIAA	10	Unmodified	_SEALPSDIAA_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S3	3	487.2469482421875	2	487.245472	972.476391	0.051415	2.5052E-05	1.0203	0.00049716	1.0718	0.00052221	487.2462252195715	38.472	0.2599	38.17	38.092	38.352	-0.30137					7	4	2	0	0	0	0.37629	1	14285	14285		43.858	3.901	1	3196100			29320	1532	18599	18694	28200	28200					-0.010948329272878254
SEALPSDIAA	10	Unmodified	_SEALPSDIAA_					0	0	0		nc|ENSG00000089737|Q9GZR7-2|DDX24;ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;DDX24|p.S507Ffs*17|1|0.26|ENSG00000089737|chr14:94060491-94060492|-/A|frameshift_variant	nc|ENSG00000089737|Q9GZR7-2|DDX24	nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S4	4	973.4839477539062	1	973.483667	972.476391	0.43514	0.0004236	-0.078739	-7.6651E-05	0.3564	0.00034695	973.4835701073804	38.55	0.28522	38.168	38.051	38.336	-0.38163					7	5	2	0	0	0	0.28012	1	14165	14165		52.268	0	1	1623400			29321	1532	18599	18694	28201	28201					-0.010948329272878254
SEAPGQRALP	10	Unmodified	_SEAPGQRALP_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2728271484375	2	513.272355	1024.53016	0.41154	0.00021123	-0.19401	-9.9579E-05	0.21753	0.00011165	513.272180531891	27.525	0.72125	27.183	26.881	27.602	-0.34201					29	13	3	0	0	0	0.055088	1	9964	9964		83.429	47.302	1	34218000			29322	2435	18600	18695	28202	28202					0.018873842950824837
SEAPGQRALP	10	Unmodified	_SEAPGQRALP_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	513.2725219726562	2	513.272355	1024.53016	0.28122	0.00014434	0.13187	6.7685E-05	0.41308	0.00021202	513.272343430092	27.263	0.83253	27.094	26.807	27.64	-0.16933					35	15	3	0	0	0	0.033083	1	9821	9821		99.755	44.982	1	19485000			29323	2435	18600	18695	28203	28203					0.018873842950824837
SEAPGQRALP	10	Unmodified	_SEAPGQRALP_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	513.2727661132812	2	513.272355	1024.53016	0.27092	0.00013905	1.6392	0.00084134	1.9101	0.00098039	513.2733698560031	27.565	1.0817	27.244	26.992	28.074	-0.32157					29	20	2	0	0	0	0.26742	1	9840	9840		53.404	24.322	1	4970900			29324	2435	18600	18695	28204	28204					0.018873842950824837
SEAPPSKMV	9	Unmodified	_SEAPPSKMV_					0	0	0		nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MULTI-MSMS	HCT116MG_D190212_S1	1	473.2394104003906	2	473.239135	944.463718	0.31613	0.00014961	0.02571	1.2167E-05	0.34184	0.00016177	473.23915066417226	25.848	0.62678	25.848	25.666	26.293	0					17	11	2	0	0	0	0.030039	1	9331	9331		86.332	48.181	1	3813700			29325	2520;4595	18601	18696	28205	28205					-0.010735675911632825
SEAPPSKMV	9	Unmodified	_SEAPPSKMV_					0	0	0		nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MULTI-MSMS	HCT116MG_D190212_S2	2	473.23919677734375	2	473.239135	944.463718	0.31186	0.00014758	0.15705	7.4321E-05	0.46891	0.00022191	473.23906245778534	26.257	0.77903	25.895	25.662	26.441	-0.36164					32	14	3	0	0	0	0.030039	1	9475	9475		86.332	46.382	1	41096000			29326	2520;4595	18601	18696	28206	28206					-0.010735675911632825
SEAPPSKMV	9	Unmodified	_SEAPPSKMV_					0	0	0		nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MULTI-MSMS	HCT116MG_D190212_S3	3	473.23883056640625	2	473.239135	944.463718	0.33109	0.00015669	-0.057229	-2.7083E-05	0.27386	0.0001296	473.23898193300175	25.966	0.98997	25.838	25.65	26.64	-0.12795					39	18	3	0	0	0	0.26031	2	9513	9513;9564		34.932	13.185	1	21688000			29327	2520;4595	18601	18696	28207;28208	28207					-0.010735675911632825
SEAPPSKMV	9	Unmodified	_SEAPPSKMV_					0	0	0		nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MULTI-MSMS	HCT116MG_D190212_S4	4	473.23907470703125	2	473.239135	944.463718	0.26388	0.00012488	-0.25265	-0.00011956	0.011233	5.3158E-06	473.2388291973677	26.267	0.78017	25.966	25.713	26.493	-0.30087					23	14	2	0	0	0	0.16285	2	9347	9337;9347		45.74	15.103	1	4690800			29328	2520;4595	18601	18696	28209;28210	28210					-0.010735675911632825
SEAPPSKMV	9	Oxidation (M)	_SEAPPSKM(Oxidation (M))V_		SEAPPSKM(1)V		SEAPPSKM(46)V	0	0	1		nc|ENSG00000116580|Q3T8J9-2|GON4L;GON4L|p.E1831Rfs*8|1|0.18|ENSG00000116580|chr1:155756984-155756985|-/T|frameshift_variant;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;GON4L|p.P1077Lfs*24|1|0.34|ENSG00000116580|chr1:155766243-155766243|G/-|frameshift_variant;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-7|YY1AP1	nc|ENSG00000163374|Q9H869-7|YY1AP1	MSMS	HCT116MG_D190212_S3	3	481.23651123046875	2	481.236593	960.458632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.815	1	17.896	17.396	18.396	0.081358								0	0	0	0.22299	1	6010	6010		45.7	13.394	1				29329	2520;4595	18601	18697	28211	28211		50			-0.023178714537721135
SEAPPTNQA	9	Unmodified	_SEAPPTNQA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	HCT116MG_D190212_S1	1	457.7143859863281	2	457.714339	913.414125	0.28222	0.00012918	0.04174	1.9105E-05	0.32397	0.00014828	457.71426688076457	17.531	1.2512	17.531	17.307	18.558	0					54	23	3	0	0	0	0.0050238	3	5960	5945;5960;6191		137.42	74.851	1	21337000			29330	5543	18602	18698	28212;28213;28214	28213					-0.04604559275617248
SEAPPTNQA	9	Unmodified	_SEAPPTNQA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	HCT116MG_D190212_S1	1	914.4216918945312	1	914.421401	913.414125	1.0424	0.00095316	-0.20966	-0.00019172	0.83271	0.00076144	914.4211272358893	17.542	1.3033	17.542	17.307	18.61	0					52	24	3	0	0	0	0.00086357	2	5961	5961;6192		193.29	110.77	1	17992000			29331	5543	18602	18698	28215;28216	28215					-0.04604559275617248
SEAPPTNQA	9	Unmodified	_SEAPPTNQA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	HCT116MG_D190212_S3	3	457.71441650390625	2	457.714339	913.414125	0.08465	3.8745E-05	0.046948	2.1489E-05	0.1316	6.0234E-05	457.71435906229925	17.374	2.4461	17.455	17.169	19.616	0.081356					136	46	5	0	0	0	0.003706	3	5778	5778;6001;6233		155.03	89.791	1	312920000			29332	5543	18602	18698	28217;28218;28219	28217					-0.04604559275617248
SEAPPTNQA	9	Unmodified	_SEAPPTNQA_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;MAGED1|p.P628Rfs*18|1|0.09|ENSG00000179222|chrX:51900215-51900215|C/-|frameshift_variant	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	457.714339	913.414125	0.050555	2.314E-05	0.24283	0.00011115	0.29339	0.00013429	457.7144043594535	17.823	1.9299	17.467	17.18	19.11	-0.35647	-0.017821	0.00013044	NaN	155.03	106	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288580000			29333	5543	18602	18698							-0.04604559275617248
SEAPRPAAA	9	Unmodified	_SEAPRPAAA_					0	0	0		ENSG00000105849|ENST00000222567|POLR1F	ENSG00000105849|ENST00000222567|POLR1F	ENSG00000105849|ENST00000222567|POLR1F	MULTI-MSMS	HCT116MG_D190212_S1	1	435.2272033691406	2	435.227417	868.44028	0.24255	0.00010556	-0.15149	-6.5931E-05	0.09106	3.9632E-05	435.2272280075506	17.385	0.20877	17.385	17.255	17.463	0					8	3	3	0	0	0	0.030723	1	5918	5918		85.642	28.17	1	9615000			29334	2040	18603	18699	28220	28220					0.0007975468651011397
SEAPRPAAA	9	Unmodified	_SEAPRPAAA_					0	0	0		ENSG00000105849|ENST00000222567|POLR1F	ENSG00000105849|ENST00000222567|POLR1F	ENSG00000105849|ENST00000222567|POLR1F	MULTI-MSMS	HCT116MG_D190212_S2	2	435.2274169921875	2	435.227417	868.44028	0.0032942	1.4337E-06	0.23677	0.00010305	0.24007	0.00010448	435.22741848708205	17.823	0.36552	17.467	17.336	17.702	-0.35647					13	6	3	0	0	0	0.012496	1	6093	6093		107.19	45.83	1	39098000			29335	2040	18603	18699	28221	28221					0.0007975468651011397
SEAPRPAAA	9	Unmodified	_SEAPRPAAA_					0	0	0		ENSG00000105849|ENST00000222567|POLR1F	ENSG00000105849|ENST00000222567|POLR1F	ENSG00000105849|ENST00000222567|POLR1F	MULTI-MSMS	HCT116MG_D190212_S2	2	869.447998046875	1	869.447557	868.44028	0.80657	0.00070127	-0.13854	-0.00012046	0.66803	0.00058082	869.447365338001	17.823	0.20896	17.467	17.336	17.545	-0.35647					5	3	2	0	0	0	0.26536	1	6119	6119		34.402	0.29928	1	6908000			29336	2040	18603	18699	28222	28222					0.0007975468651011397
SEAPRPAAA	9	Unmodified	_SEAPRPAAA_					0	0	0		ENSG00000105849|ENST00000222567|POLR1F	ENSG00000105849|ENST00000222567|POLR1F	ENSG00000105849|ENST00000222567|POLR1F	MULTI-MSMS	HCT116MG_D190212_S3	3	435.2274475097656	2	435.227417	868.44028	0.019773	8.6056E-06	0.23403	0.00010186	0.25381	0.00011046	435.227419719501	16.906	0.31234	16.99	16.86	17.173	0.084467					8	5	2	0	0	0	0.026999	1	5648	5648		89.401	45.542	1	7618700			29337	2040	18603	18699	28223	28223					0.0007975468651011397
SEAPWNTRA	9	Unmodified	_SEAPWNTRA_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	HCT116MG_D190212_S2	2	516.2489013671875	2	516.24888	1030.48321	0.3151	0.00016267	0.70624	0.0003646	1.0213	0.00052727	516.2490957325186	32.116	0.25965	31.886	31.735	31.995	-0.23009					9	4	3	0	0	0	0.13424	1	11890	11890		51.415	19.11	1	10686000			29338	1346	18604	18700	28224	28224					-0.030814752560672787
SEAQVQKF	8	Unmodified	_SEAQVQKF_					0	0	0		PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	468.74273681640625	2	468.742899	935.471246	0.28562	0.00013388	-0.28054	-0.0001315	0.0050844	2.3833E-06	468.7427644470443	27.062	0.26431	26.709	26.554	26.818	-0.35254					7	4	2	0	0	0	0.15825	1	9841	9841		81.89	29.622	1	6456400			29339	2579	18605	18701	28225	28225					0.0009290800077224048
SEAQVQKF	8	Unmodified	_SEAQVQKF_					0	0	0		PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	468.7757263183594	2	468.742899	935.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.771	1	26.622	26.122	27.122	-0.14924								0	0	0	0.47743	1	9619	9619		44.407	14.182	1				29340	2579	18605	18701	28226	28226					0.0009290800077224048
SEARLFSFEP	10	Unmodified	_SEARLFSFEP_					0	0	0			REV__ENSG00000109674|ENST00000264596|NEIL3	REV__ENSG00000109674|ENST00000264596|NEIL3	MSMS	HCT116MG_D190212_S1	1	591.79541015625	2	591.793121	1181.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.902	1	27.902	27.402	28.402	0								0	0	0	0.90892	1	10144	10144		13.906	1.6654	1		+		29341	11378	18606	18702	28227	28227					-0.01183479736209847
SEARSARAAP	10	Unmodified	_SEARSARAAP_					0	0	0			REV__ENSG00000185442|ENST00000327355|FAM174B	REV__ENSG00000185442|ENST00000327355|FAM174B	MSMS	HCT116MG_D190212_S3	3	508.2677001953125	2	508.267604	1014.52066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.987	1	16.072	15.572	16.572	0.085423								0	0	0	0.90475	1	5272	5272		14.838	1.3304	1		+		29342	13846	18607	18703	28228	28228					0.01397616009558078
SEASFTLT	8	Unmodified	_SEASFTLT_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	855.40966796875	1	855.40944	854.402163	0.76629	0.00065549	-0.083133	-7.1113E-05	0.68316	0.00058438	855.4094908447687	42.406	0.25928	42.336	42.17	42.429	-0.069984					8	4	2	0	0	0	0.070772	1	16042	16042		101.72	41.332	1	25755000			29343	3119	18608	18704	28229	28229					-0.03086176018803144
SEASFTLTA	9	Unmodified	_SEASFTLTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	926.4475708007812	1	926.446553	925.439277	0.77633	0.00071923	0.048878	4.5283E-05	0.82521	0.00076451	926.4464385458258	44.277	0.42775	44.277	44.088	44.516	0					19	7	4	0	0	0	0.031005	2	16740	16712;16740		85.357	27.885	1	180020000			29344	3119	18609	18705	28230;28231	28231					-0.02642504473055851
SEASFTLTA	9	Unmodified	_SEASFTLTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	926.447021484375	1	926.446553	925.439277	0.9626	0.0008918	-0.31392	-0.00029083	0.64868	0.00060097	926.4460738143595	44.281	1.1484	44.202	44.018	45.166	-0.078876					59	21	4	0	0	0	0.031005	2	16802	16802;17031		85.357	45.399	1	591290000			29345	3119	18609	18705	28232;28233	28232					-0.02642504473055851
SEASFTLTA	9	Unmodified	_SEASFTLTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	926.4468383789062	1	926.446553	925.439277	1.1739	0.0010875	-0.26021	-0.00024108	0.91365	0.00084645	926.4462410193295	44.56	0.76741	44.252	44.019	44.786	-0.30759					37	18	3	0	0	0	0.031005	2	16647	16579;16647		85.357	45.399	1	104190000			29346	3119	18609	18705	28234;28235	28235					-0.02642504473055851
SEASFTLTA	9	Unmodified	_SEASFTLTA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	926.4472045898438	1	926.446553	925.439277	0.76991	0.00071328	0.063034	5.8398E-05	0.83295	0.00077168	926.4465077293297	44.623	0.96754	44.249	44.019	44.987	-0.37326					54	33	3	0	0	0	0.031005	2	16426	16426;16649		85.357	45.399	1	107070000			29347	3119	18609	18705	28236;28237	28236					-0.02642504473055851
SEASFTLTAA	10	Unmodified	_SEASFTLTAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	997.4848022460938	1	997.483667	996.476391	0.55328	0.00055189	0.043044	4.2935E-05	0.59632	0.00059482	997.4835358660661	44.224	0.42709	44.224	44.036	44.464	0					18	7	4	0	0	0	0.02258	1	16732	16732		115.69	60.918	1	146300000			29348	3119	18610	18706	28238	28238					-0.021988329272971896
SEASFTLTAA	10	Unmodified	_SEASFTLTAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	499.2454833984375	2	499.245472	996.476391	0.22617	0.00011291	0.056223	2.8069E-05	0.28239	0.00014098	499.24544884122867	44.223	0.21516	44.223	44.088	44.304	0					5	3	2	0	0	0	0.052604	1	16756	16756		85.272	30.498	1	20054000			29349	3119	18610	18706	28239	28239					-0.021988329272971896
SEASFTLTAA	10	Unmodified	_SEASFTLTAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	997.4846801757812	1	997.483667	996.476391	0.46392	0.00046275	0.054916	5.4778E-05	0.51883	0.00051753	997.4835334516144	44.257	0.99154	44.178	44.019	45.01	-0.078369					47	18	4	0	0	0	0.037761	2	16794	16794;17033		96.285	41.511	1	448890000			29350	3119	18610	18706	28240;28241	28240					-0.021988329272971896
SEASFTLTAA	10	Unmodified	_SEASFTLTAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	997.4843139648438	1	997.483667	996.476391	0.79829	0.00079628	-0.14379	-0.00014343	0.6545	0.00065285	997.4832777896962	44.541	0.51453	44.233	44.019	44.533	-0.30759					21	13	2	0	0	0	0.037761	1	16645	16645		96.285	41.511	1	37402000			29351	3119	18610	18706	28242	28242					-0.021988329272971896
SEASFTLTAA	10	Unmodified	_SEASFTLTAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	997.484375	1	997.483667	996.476391	0.61204	0.0006105	0.12932	0.000129	0.74137	0.0007395	997.4835680677243	44.576	0.38603	44.202	44.019	44.405	-0.37326					27	14	3	0	0	0	0.037761	1	16419	16419		96.285	41.511	1	35850000			29352	3119	18610	18706	28243	28243					-0.021988329272971896
SEASFTLTAA	10	Unmodified	_SEASFTLTAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-SECPEP	HCT116MG_D190212_S4	4	499.747314453125	2	499.245472	996.476391	0.43715	0.00021825	-0.21344	-0.00010656	0.22371	0.00011169	499.24534218620977	44.629	0.21631	44.256	44.07	44.286	-0.37325					6	4	2	0	0	0	0.23995	1	16452	16452		37.974	17.52	1	13428000			29353	3119	18610	18706	28244	28244					-0.021988329272971896
SEASFTLTAA	10	Unmodified	_SEASFTLTAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH	HCT116MG_D190212_S3	3		2	499.245472	996.476391	0.67006	0.00033453	-0.16357	-8.1662E-05	0.50649	0.00025286	499.24544122721136	44.56	0.14346	44.252	44.123	44.266	-0.30759	0.0084792	-6.3427E-05	NaN	85.272	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7239400			29354	3119	18610	18706							-0.021988329272971896
SEASGFAGA	9	Unmodified	_SEASGFAGA_					0	0	0		CNTLN|p.K113Rfs*51|1|0.33|ENSG00000044459|chr9:17135401-17135401|A/-|frameshift_variant;ENST00000484374.1_1_9:17135063-17166975:+|nuORF;nc|ENSG00000044459|Q9NXG0-3|CNTLN;CNTLN|p.C821Lfs*2|1|0.17|ENSG00000044459|chr9:17394913-17394914|-/T|frameshift_variant;CNTLN|p.K1130Rfs*14|1|0.25|ENSG00000044459|chr9:17462996-17462996|A/-|frameshift_variant;CNTLN|p.M1308*|1|0.36|ENSG00000044459|chr9:17484355-17484355|A/-|frameshift_variant;CNTLN|p.M1308Nfs*9|1|0.46|ENSG00000044459|chr9:17484354-17484355|-/A|frameshift_variant;CNTLN|p.T1324Dfs*27|1|0.14|ENSG00000044459|chr9:17484406-17484407|-/A|frameshift_variant;CNTLN|p.I1388Nfs*3|1|0.3|ENSG00000044459|chr9:17502587-17502588|-/A|frameshift_variant;nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN	CNTLN|p.K113Rfs*51|1|0.33|ENSG00000044459|chr9:17135401-17135401|A/-|frameshift_variant	CNTLN|p.K113Rfs*51|1|0.33|ENSG00000044459|chr9:17135401-17135401|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	796.3468017578125	1	796.347174	795.339897	0.84293	0.00067127	0.078015	6.2127E-05	0.92095	0.00073339	796.3469942019866	29.154	0.41631	28.932	28.786	29.202	-0.22195					9	7	2	0	0	0	0.019399	1	10586	10586		97.075	42.301	1	5417100			29355	501	18611	18707	28245	28245					-0.06595902367143935
SEASGTPAP	9	Unmodified	_SEASGTPAP_					0	0	0		ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	MULTI-MSMS	HCT116MG_D190212_S2	2	816.3727416992188	1	816.373389	815.366112	0.88097	0.0007192	0.013101	1.0695E-05	0.89407	0.0007299	816.3733823077798	20.649	0.57759	20.269	20.076	20.654	-0.37949					15	10	3	0	0	0	0.011506	1	7231	7231		109.63	20.202	1	13167000			29356	5270	18612	18708	28246	28246					-0.04895633195667415
SEASGTPAP	9	Unmodified	_SEASGTPAP_					0	0	0		ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	MULTI-MSMS	HCT116MG_D190212_S3	3	816.3738403320312	1	816.373389	815.366112	0.89751	0.0007327	0.11635	9.4984E-05	1.0139	0.00082769	816.3733337600439	20.293	0.67695	20.341	19.999	20.676	0.048107					22	12	3	0	0	0	0.014796	1	6991	6991		101.72	12.295	1	11166000			29357	5270	18612	18708	28247	28247					-0.04895633195667415
SEASGTPAP	9	Unmodified	_SEASGTPAP_					0	0	0		ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	ENSG00000173065|ENST00000581407|FAM222B	MULTI-MSMS	HCT116MG_D190212_S4	4	816.3754272460938	1	816.373389	815.366112	0.89373	0.00072962	0.16333	0.00013334	1.0571	0.00086296	816.3734554341754	20.504	0.57178	20.303	19.988	20.56	-0.20133					21	10	3	0	0	0	0.026974	1	6984	6984		89.427	18.711	1	3872800			29358	5270	18612	18708	28248	28248					-0.04895633195667415
SEASHWKQA	9	Unmodified	_SEASHWKQA_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-SECPEP	HCT116MG_D190212_S1	1	521.765625	2	522.24888	1042.48321	0.30035	0.00015686	0.17984	9.392E-05	0.48019	0.00025078	522.2487590256395	18.792	0.15635	18.792	18.662	18.819	0					6	2	3	0	0	0	0.027317	1	6488	6488		103.35	67.309	1	5237400			29359	4675	18613	18709	28249	28249					-0.03633475256037855
SEASHWKQA	9	Unmodified	_SEASHWKQA_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	HCT116MG_D190212_S2	2	522.2489013671875	2	522.24888	1042.48321	0.35362	0.00018468	0.012795	6.6823E-06	0.36641	0.00019136	522.2487570263902	19.492	0.31173	19.122	18.94	19.252	-0.3695					11	5	3	0	0	0	0.003706	1	6764	6764		155.03	118.9	1	51486000			29360	4675	18613	18709	28250	28250					-0.03633475256037855
SEASHWKQA	9	Unmodified	_SEASHWKQA_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2489624023438	2	522.24888	1042.48321	0.28655	0.00014965	0.029033	1.5162E-05	0.31558	0.00016481	522.2488782341486	18.259	0.31264	18.335	18.153	18.465	0.076334					8	5	2	0	0	0	0.0201	1	6213	6213		96.367	67.88	1	5398800			29361	4675	18613	18709	28251	28251					-0.03633475256037855
SEASKLGAP	9	Unmodified	_SEASKLGAP_					0	0	0		ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	MULTI-MSMS	HCT116MG_D190212_S2	2	430.2296142578125	2	430.229625	858.444697	0.12114	5.212E-05	-0.28198	-0.00012132	-0.16084	-6.9196E-05	430.2294270278498	25.263	0.2599	24.888	24.712	24.972	-0.37521					11	4	3	0	0	0	0.026999	1	9091	9091		89.401	29.327	1	23531000			29362	5911	18614	18710	28252	28252					0.009812191094397349
SEASKLGAP	9	Unmodified	_SEASKLGAP_					0	0	0		ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	MULTI-MSMS	HCT116MG_D190212_S3	3	430.2294921875	2	430.229625	858.444697	0.22223	9.5611E-05	-0.46204	-0.00019879	-0.23981	-0.00010317	430.22936610265447	24.882	0.4687	24.798	24.601	25.07	-0.083694					12	8	2	0	0	0	0.077982	1	8854	8854		62.573	6.3957	1	14004000			29363	5911	18614	18710	28253	28253					0.009812191094397349
SEASVFDAY	9	Unmodified	_SEASVFDAY_					0	0	0		ENST00000447425.1_1_7:22813267-22813561:-|nuORF;ENSG00000197728|ENST00000646449|RPS26	ENST00000447425.1_1_7:22813267-22813561:-|nuORF	ENST00000447425.1_1_7:22813267-22813561:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	988.4282836914062	1	988.425818	987.418542	0.84702	0.00083722	0.35648	0.00035235	1.2035	0.0011896	988.4261270846034	46.778	0.26067	46.464	46.333	46.594	-0.31405					7	4	2	0	0	0	0.12335	1	17584	17584		53.576	30.427	1	2528600			29364	6169	18615	18711	28254	28254					-0.07567094852709033
SEAVNDYLAK	10	Unmodified	_SEAVNDYLAK_					0	0	0			REV__nc|ENSG00000050820|P56945-4|BCAR1	REV__nc|ENSG00000050820|P56945-4|BCAR1	MULTI-MSMS	HCT116MG_D190212_S3	3	555.2771606445312	2	555.277303	1108.54005	0.50834	0.00028227	-0.28482	-0.00015816	0.22351	0.00012411	555.277259293184	33.318	0.32673	33.028	32.925	33.252	-0.29013					12	8	2	0	0	0	0.73913	1	12235	12235		17.113	0.96379	1	9447000	+		29365	10623	18616	18712	28255	28255					-0.009874724901919762
SEAVNDYLAK	10	Unmodified	_SEAVNDYLAK_					0	0	0			REV__nc|ENSG00000050820|P56945-4|BCAR1	REV__nc|ENSG00000050820|P56945-4|BCAR1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	555.277303	1108.54005	0.50834	0.00028227	-0.28482	-0.00015816	0.22351	0.00012411	555.277259293184	33.318	0.32673	33.028	32.925	33.252	-0.29013	0.035581	-3.3039E-05	NaN	17.113	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9447000	+		29366	10623	18616	18712							-0.009874724901919762
SEAVNDYLAK	10	Unmodified	_SEAVNDYLAK_					0	0	0			REV__nc|ENSG00000050820|P56945-4|BCAR1	REV__nc|ENSG00000050820|P56945-4|BCAR1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	555.277303	1108.54005	0.65706	0.00036485	-0.22027	-0.00012231	0.43679	0.00024254	555.2771521830291	33.339	0.35632	32.957	32.909	33.265	-0.38223	-0.035581	3.8657E-05	NaN	17.113	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6554400	+		29367	10623	18616	18712							-0.009874724901919762
SECGKTFRV	9	Carbamidomethyl (C)	_SEC(Carbamidomethyl (C))GKTFRV_	SEC(1)GKTFRV		SEC(65)GKTFRV		0	1	0		ENSG00000197279|ENST00000683778|ZNF165;ENSG00000147117|ENST00000377073|ZNF157	ENSG00000197279|ENST00000683778|ZNF165	ENSG00000197279|ENST00000683778|ZNF165	MULTI-MSMS	HCT116MG_D190212_S2	2	361.8468933105469	3	361.846569	1082.51788	-0.10119	-3.6615E-05	0.064991	2.3517E-05	-0.036198	-1.3098E-05	361.84653518672036	27.663	0.20735	27.321	27.191	27.398	-0.34201					6	3	2	0	0	0	0.068828	1	10068	10068		65.474	21.492	1	24907000			29368	3971	18617	18713	28256	28256	21				-0.020079754396192584
SECGKTFRV	9	Carbamidomethyl (C)	_SEC(Carbamidomethyl (C))GKTFRV_	SEC(1)GKTFRV		SEC(120)GKTFRV		0	1	0		ENSG00000197279|ENST00000683778|ZNF165;ENSG00000147117|ENST00000377073|ZNF157	ENSG00000197279|ENST00000683778|ZNF165	ENSG00000197279|ENST00000683778|ZNF165	MULTI-MSMS	HCT116MG_D190212_S3	3	542.2662963867188	2	542.266216	1082.51788	0.54838	0.00029737	-0.26813	-0.0001454	0.28025	0.00015197	542.2661393130444	27.367	0.26023	27.198	27.068	27.328	-0.16933					10	4	3	0	0	0	0.0068642	1	9868	9868		121.35	35.014	1	10481000			29369	3971	18617	18713	28257	28257	21				-0.020079754396192584
SECGKTFRV	9	Carbamidomethyl (C)	_SEC(Carbamidomethyl (C))GKTFRV_	SEC(1)GKTFRV		SEC(53)GKTFRV		0	1	0		ENSG00000197279|ENST00000683778|ZNF165;ENSG00000147117|ENST00000377073|ZNF157	ENSG00000197279|ENST00000683778|ZNF165	ENSG00000197279|ENST00000683778|ZNF165	MSMS	HCT116MG_D190212_S4	4	542.2661743164062	2	542.266216	1082.51788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.704	1	27.382	26.882	27.882	-0.32157								0	0	0	0.11783	1	9929	9929		53.317	11.361	1				29370	3971	18617	18713	28258	28258	21				-0.020079754396192584
SECGKTFRV	9	Carbamidomethyl (C)	_SEC(Carbamidomethyl (C))GKTFRV_					0	1	0		ENSG00000197279|ENST00000683778|ZNF165;ENSG00000147117|ENST00000377073|ZNF157	ENSG00000197279|ENST00000683778|ZNF165	ENSG00000197279|ENST00000683778|ZNF165	MULTI-MATCH	HCT116MG_D190212_S1	1		2	542.266216	1082.51788	0.49106	0.00026629	0.086687	4.7008E-05	0.57775	0.00031329	542.2661785557225	27.065	0.20785	27.065	26.97	27.178	0	-0.12941	0.00013943	NaN	121.35	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4628200			29371	3971	18617	18713			21				-0.020079754396192584
SECGKTFTV	9	Carbamidomethyl (C)	_SEC(Carbamidomethyl (C))GKTFTV_	SEC(1)GKTFTV		SEC(100)GKTFTV		0	1	0		ZNF160|p.R297C|1|0.36|ENSG00000170949|chr19:53069645-53069645|G/A|missense_variant;ZNF160|p.K668Rfs*53|1|0.04|ENSG00000170949|chr19:53068531-53068531|T/-|frameshift_variant;ZNF160|p.P732Tfs*5|1|0.23|ENSG00000170949|chr19:53068340-53068341|-/T|frameshift_variant;ENSG00000170949|ENST00000683776|ZNF160	ZNF160|p.R297C|1|0.36|ENSG00000170949|chr19:53069645-53069645|G/A|missense_variant	ZNF160|p.R297C|1|0.36|ENSG00000170949|chr19:53069645-53069645|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	515.240966796875	2	514.739499	1027.46445	0.32208	0.00016579	0.23677	0.00012187	0.55885	0.00028766	514.7395484922444	33.324	0.2107	33.033	32.937	33.148	-0.29013					9	5	2	0	0	0	0.016412	2	12229	12229;12248		100.09	50.536	1	6697600			29372	5169	18618	18714	28259;28260	28259	29				-0.04818772942121541
SECGKTFTV	9	Carbamidomethyl (C)	_SEC(Carbamidomethyl (C))GKTFTV_					0	1	0		ZNF160|p.R297C|1|0.36|ENSG00000170949|chr19:53069645-53069645|G/A|missense_variant;ZNF160|p.K668Rfs*53|1|0.04|ENSG00000170949|chr19:53068531-53068531|T/-|frameshift_variant;ZNF160|p.P732Tfs*5|1|0.23|ENSG00000170949|chr19:53068340-53068341|-/T|frameshift_variant;ENSG00000170949|ENST00000683776|ZNF160	ZNF160|p.R297C|1|0.36|ENSG00000170949|chr19:53069645-53069645|G/A|missense_variant	ZNF160|p.R297C|1|0.36|ENSG00000170949|chr19:53069645-53069645|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	514.739499	1027.46445	0.49845	0.00025657	-0.74021	-0.00038102	-0.24176	-0.00012445	514.7391332133185	33.185	0.25952	32.974	32.845	33.104	-0.21135	-0.029817	-0.00049312	NaN	100.09	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18275000			29373	5169	18618	18714			29				-0.04818772942121541
SECSSSLT	8	Unmodified	_SECSSSLT_					0	0	0		ENST00000253686.6_1_3:15090973-15091111:-|nuORF	ENST00000253686.6_1_3:15090973-15091111:-|nuORF	ENST00000253686.6_1_3:15090973-15091111:-|nuORF	MSMS	HCT116MG_D190212_S1	1	407.16754150390625	2	407.168376	812.322198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.36	1	22.36	21.86	22.86	0								0	0	0	0.8837	1	7912	7912		9.3474	0	1				29374	6807	18619	18715	28261	28261					-0.09146985684310494
SEDARQGEQY	10	Unmodified	_SEDARQGEQY_					0	0	0		ENSG00000068383|ENST00000368594|INPP5A;JAG1-INPP5A|1|fusion	ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	MULTI-MSMS	HCT116MG_D190212_S2	2	592.0527954101562	2	591.754724	1181.49489	0.35528	0.00021024	-0.36389	-0.00021533	-0.0086079	-5.0938E-06	591.7542893488866	18.306	0.15681	17.943	17.851	18.008	-0.36325					4	2	2	0	0	0	0.33066	1	6294	6294		47.749	3.9763	1	3005300			29375	1202	18620	18716	28262	28262					-0.08859323023352772
SEDDDCDDD	9	Unmodified	_SEDDDCDDD_					0	0	0		ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	ENSG00000189269|ENST00000317749|DRICH1	MSMS	HCT116MG_D190212_S2	2	514.8248901367188	2	514.635291	1027.25603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.221	1	55.033	54.533	55.533	-0.18797								0	0	0	0.7701	1	21281	21281		0.52476	0.52476	1				29376	6030	18621	18717	28263	28263					-0.2565089110767076
SEDDPILQI	9	Unmodified	_SEDDPILQI_					0	0	0		NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;ENST00000507233.1_1_5:37342606-37350289:-|nuORF	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1029.5084228515625	1	1029.50988	1028.50261	0.38473	0.00039608	-0.12489	-0.00012858	0.25983	0.0002675	1029.5097563401907	54.275	0.25658	54.086	53.945	54.201	-0.1894					6	4	2	0	0	0	0.0090481	1	20915	20915		115.69	26.788	1	16614000			29377	2394	18622	18718	28264	28264					-0.010505637558026137
SEDDPILQI	9	Unmodified	_SEDDPILQI_					0	0	0		NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;ENST00000507233.1_1_5:37342606-37350289:-|nuORF	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7824096679688	2	515.258579	1028.50261	0.17484	9.0086E-05	-0.0088557	-4.563E-06	0.16598	8.5523E-05	515.2589427439506	54.408	0.3138	54.112	53.929	54.243	-0.29587					8	5	2	0	0	0	0.049545	1	20627	20627		74.929	16.25	1	1139800			29378	2394	18622	18718	28265	28265					-0.010505637558026137
SEDDPILQI	9	Unmodified	_SEDDPILQI_					0	0	0		NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;ENST00000507233.1_1_5:37342606-37350289:-|nuORF	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1029.5103759765625	1	1029.50988	1028.50261	0.52813	0.00054372	0.093717	9.6483E-05	0.62185	0.0006402	1029.5099090013593	54.46	0.26146	54.164	53.981	54.243	-0.29587					10	4	3	0	0	0	0.0060607	1	20633	20633		128.37	27.994	1	6163900			29379	2394	18622	18718	28266	28266					-0.010505637558026137
SEDDPILQI	9	Unmodified	_SEDDPILQI_					0	0	0		NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;ENST00000507233.1_1_5:37342606-37350289:-|nuORF	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	1029.9781494140625	1	1029.50988	1028.50261	0.6905	0.00071088	-0.55342	-0.00056975	0.13709	0.00014113	1029.5089982112304	54.422	0.20854	54.099	53.984	54.192	-0.32349					5	3	2	0	0	0	0.0078474	1	20330	20330		120.45	27.628	1	1241100			29380	2394	18622	18718	28267	28267					-0.010505637558026137
SEDEENRSE	9	Unmodified	_SEDEENRSE_					0	0	0		ENSG00000125878|ENST00000246080|TCF15	ENSG00000125878|ENST00000246080|TCF15	ENSG00000125878|ENST00000246080|TCF15	MULTI-SECPEP	HCT116MG_D190212_S3	3	547.332763671875	2	547.715264	1093.41598	0.37408	0.00020489	0.61114	0.00033473	0.98522	0.00053962	547.7155329745277	47.282	0.20798	46.966	46.801	47.009	-0.31524					5	3	2	0	0	0	0.25723	1	17702	17702		12.532	0	1	2773400			29381	2913	18623	18719	28268	28268					-0.1269959504832059
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	HCT116MG_D190212_S2	2	361.5364990234375	3	361.516995	1081.52915	-0.10548	-3.8133E-05	0.16286	5.8876E-05	0.057377	2.0743E-05	361.5169888813727	22.203	0.15637	21.818	21.687	21.843	-0.3852					4	2	2	0	0	0	0.35842	1	7802	7802		24.991	13.496	1	5794000			29382	4993	18624	18720	28269	28269					-0.0083487486449485
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	HCT116MG_D190212_S2	2	541.7357177734375	2	541.771854	1081.52915	0.57129	0.00030951	-0.32209	-0.0001745	0.2492	0.00013501	541.7715609847709	22.203	0.31166	21.818	21.687	21.999	-0.3852					9	5	3	0	0	0	0.0896	1	7824	7824		70.332	12.61	1	27195000			29383	4993	18624	18720	28270	28270					-0.0083487486449485
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7711181640625	2	541.771854	1081.52915	0.43068	0.00023333	-0.12855	-6.9642E-05	0.30214	0.00016369	541.7716232170641	21.596	0.26451	21.615	21.483	21.747	0.018446					9	4	3	0	0	0	0.021544	1	7541	7541		114.2	31.672	1	9667700			29384	4993	18624	18720	28271	28271					-0.0083487486449485
SEDEIKKAY	9	Unmodified	_SEDEIKKAY_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MSMS	HCT116MG_D190212_S4	4	541.735107421875	2	541.771854	1081.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.897	1	21.679	21.179	22.179	-0.21832								0	0	0	0.026538	1	7586	7586		103.42	30.451	1				29385	4993	18624	18720	28272	28272					-0.0083487486449485
SEDEKQQYLP	10	Unmodified	_SEDEKQQYLP_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S2	2	618.7909545898438	2	618.790775	1235.567	0.74672	0.00046207	-0.10075	-6.2344E-05	0.64597	0.00039972	618.7908421213765	33.233	0.51521	33.039	32.861	33.377	-0.19458					21	9	3	0	0	0	0.077015	1	12359	12359		100.09	56.318	1	25025000			29386	2741	18625	18721	28273	28273					-0.041364086696376035
SEDEKQQYLP	10	Unmodified	_SEDEKQQYLP_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S3	3	618.7913208007812	2	618.790775	1235.567	0.46977	0.00029069	0.094352	5.8384E-05	0.56412	0.00034907	618.7907054215009	33.405	0.55584	33.115	32.955	33.511	-0.29013					21	11	3	0	0	0	0.055292	1	12265	12265		106.94	65.101	1	8875100			29387	2741	18625	18721	28274	28274					-0.041364086696376035
SEDEKQQYLP	10	Unmodified	_SEDEKQQYLP_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	HCT116MG_D190212_S4	4	618.7913818359375	2	618.790775	1235.567	0.77647	0.00048047	0.0040415	2.5009E-06	0.78051	0.00048297	618.7907569689187	33.511	0.41754	33.128	32.997	33.414	-0.38327					13	9	2	0	0	0	0.13746	1	12203	12203		86.332	57.25	1	3059000			29388	2741	18625	18721	28275	28275					-0.041364086696376035
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1033.4783935546875	1	1033.47964	1032.47237	0.42127	0.00043538	0.25286	0.00026132	0.67413	0.0006967	1033.480061185893	25.701	0.41499	25.332	25.135	25.55	-0.36914					14	7	2	0	0	0	0.0015154	1	9252	9252		189.73	114.8	1	21906000			29389	1430	18626	18722	28276	28276					-0.04256922420995579
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1033.4801025390625	1	1033.47964	1032.47237	0.6478	0.00066948	0.3101	0.00032048	0.95789	0.00098996	1033.479896255286	25.388	0.36397	25.282	25.1	25.464	-0.10618					10	6	2	0	0	0	0.0036431	1	9079	9079		155.95	93.381	1	6013800			29390	1430	18626	18722	28277	28277					-0.04256922420995579
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;TNPO2|p.H347Pfs*4|1|0.35|ENSG00000105576|chr19:12711373-12711374|-/G|frameshift_variant	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	TNPO1|p.C844Vfs*45|4|0.31|ENSG00000083312|chr5:72903718-72903718|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1033.47964	1032.47237	0.69437	0.00071762	-0.17515	-0.00018102	0.51922	0.0005366	1033.4792832374653	25.68	0.31218	25.39	25.204	25.516	-0.29023	0.055215	-0.00045476	NaN	189.73	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1597000			29391	1430	18626	18722							-0.04256922420995579
SEDFGVKKA	9	Unmodified	_SEDFGVKKA_					0	0	0		ENST00000485844.1_1_13:111532446-111545420:-|nuORF;ENST00000310847.8_1_13:111545156-111545609:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000485844.1_1_13:111532446-111545420:-|nuORF	ENST00000485844.1_1_13:111532446-111545420:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	490.756103515625	2	490.756007	979.497461	0.33524	0.00016452	0.16798	8.2438E-05	0.50323	0.00024696	490.7559508274076	22.333	0.31317	22.333	22.167	22.481	0					7	5	2	0	0	0	0.0067688	1	7909	7909		122.18	64.708	1	11569000			29392	1497	18627	18723	28278	28278					0.006891771722393969
SEDFGVKKA	9	Unmodified	_SEDFGVKKA_					0	0	0		ENST00000485844.1_1_13:111532446-111545420:-|nuORF;ENST00000310847.8_1_13:111545156-111545609:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000485844.1_1_13:111532446-111545420:-|nuORF	ENST00000485844.1_1_13:111532446-111545420:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	491.2485046386719	2	490.756007	979.497461	0.24114	0.00011834	0.023976	1.1766E-05	0.26512	0.00013011	490.75594084322915	22.877	0.31204	22.492	22.31	22.622	-0.3852					9	5	2	0	0	0	0.0045841	2	8121	8121;8127		142.08	74.736	1	59899000			29393	1497	18627	18723	28279;28280	28279					0.006891771722393969
SEDFGVKKA	9	Unmodified	_SEDFGVKKA_					0	0	0		ENST00000485844.1_1_13:111532446-111545420:-|nuORF;ENST00000310847.8_1_13:111545156-111545609:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000485844.1_1_13:111532446-111545420:-|nuORF	ENST00000485844.1_1_13:111532446-111545420:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	490.7559814453125	2	490.756007	979.497461	0.1015	4.9812E-05	0.20183	9.9047E-05	0.30333	0.00014886	490.7559256940821	22.187	0.46902	22.188	22.042	22.511	0.00074577					16	8	3	0	0	0	0.0042464	1	7770	7770		147.06	79.715	1	27526000			29394	1497	18627	18723	28281	28281					0.006891771722393969
SEDFGVKKA	9	Unmodified	_SEDFGVKKA_					0	0	0		ENST00000485844.1_1_13:111532446-111545420:-|nuORF;ENST00000310847.8_1_13:111545156-111545609:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10	ENST00000485844.1_1_13:111532446-111545420:-|nuORF	ENST00000485844.1_1_13:111532446-111545420:-|nuORF	MSMS	HCT116MG_D190212_S4	4	490.75604248046875	2	490.756007	979.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.558	1	22.32	21.82	22.82	-0.23758								0	0	0	0.007493	1	7853	7853		110.67	53.203	1				29395	1497	18627	18723	28282	28282					0.006891771722393969
SEDGSLHVF	9	Unmodified	_SEDGSLHVF_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S2	2	495.7300720214844	2	495.729989	989.445425	0.64241	0.00031846	-0.54392	-0.00026964	0.098489	4.8824E-05	495.72966605980946	42.686	0.36386	42.616	42.377	42.741	-0.069981					15	6	3	0	0	0	0.013464	2	16187	16146;16187		104.8	60.941	1	47684000			29396	5494	18628	18724	28283;28284	28284					-0.049719862415145144
SEDGSLHVF	9	Unmodified	_SEDGSLHVF_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MSMS	HCT116MG_D190212_S3	3	495.7301330566406	2	495.729989	989.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.064	1	42.759	42.259	43.259	-0.30472								0	0	0	0.0047834	1	16061	16061		117.6	67.93	1				29397	5494	18628	18724	28285	28285					-0.049719862415145144
SEDGSLHVF	9	Unmodified	_SEDGSLHVF_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	495.729989	989.445425	0.20516	0.0001017	-0.025047	-1.2417E-05	0.18011	8.9285E-05	495.73006969518065	42.716	0.30947	42.716	42.538	42.847	0	0.050011	0.00031257	NaN	104.8	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6874500			29398	5494	18628	18724							-0.049719862415145144
SEDHFQPF	8	Unmodified	_SEDHFQPF_					0	0	0		CON__P00735	CON__P00735	CON__P00735	MULTI-SECPEP	HCT116MG_D190212_S2	2	504.30181884765625	2	503.716882	1005.41921	0.72568	0.00036554	-1.1968	-0.00060284	-0.47109	-0.0002373	503.7163164190646	42.594	0.4161	42.524	42.325	42.741	-0.069984					11	7	2	0	0	0	0.32538	1	16191	16191		9.3474	7.5032	1	11955000		+	29399	543	18629	18725	28286	28286					-0.08328255412993713
SEDHFQPF	8	Unmodified	_SEDHFQPF_					0	0	0		CON__P00735	CON__P00735	CON__P00735	MULTI-SECPEP	HCT116MG_D190212_S3	3	503.1076354980469	2	503.716882	1005.41921	0.43597	0.0002196	-0.35313	-0.00017788	0.08284	4.1728E-05	503.7167355198928	42.903	0.2596	42.599	42.404	42.663	-0.30472					10	4	3	0	0	0	0.32538	1	15982	15982		2.3027	0	1	3760300		+	29400	543	18629	18725	28287	28287					-0.08328255412993713
SEDISHITP	9	Unmodified	_SEDISHITP_					0	0	0		ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	MULTI-MSMS	HCT116MG_D190212_S1	1	499.74346923828125	2	499.743096	997.47164	0.3674	0.00018361	0.47376	0.00023676	0.84116	0.00042037	499.7433809816845	32.699	0.36449	32.699	32.378	32.742	0					10	6	2	0	0	0	0.042978	1	12034	12034		78.149	29.804	1	7112700			29401	3539	18630	18726	28288	28288					-0.027197170700674178
SEDISHITP	9	Unmodified	_SEDISHITP_					0	0	0		ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	MULTI-MSMS	HCT116MG_D190212_S2	2	499.7441711425781	2	499.743096	997.47164	0.49178	0.00024577	0.4386	0.00021919	0.93038	0.00046495	499.7431589138855	32.777	0.57085	32.565	32.221	32.792	-0.21135					18	10	3	0	0	0	0.0066233	1	12126	12126		123.45	59.214	1	23151000			29402	3539	18630	18726	28289	28289					-0.027197170700674178
SEDISHITP	9	Unmodified	_SEDISHITP_					0	0	0		ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	MULTI-MSMS	HCT116MG_D190212_S3	3	499.7435607910156	2	499.743096	997.47164	0.66075	0.00033021	0.40071	0.00020025	1.0615	0.00053046	499.74341512141086	32.952	0.54409	32.667	32.196	32.74	-0.28511					18	11	2	0	0	0	0.057285	1	12032	12032		71.134	20.279	1	11748000			29403	3539	18630	18726	28290	28290					-0.027197170700674178
SEDISHITP	9	Unmodified	_SEDISHITP_					0	0	0		ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	MSMS	HCT116MG_D190212_S4	4	499.7439880371094	2	499.743096	997.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.949	1	32.567	32.067	33.067	-0.38223								0	0	0	0.047256	1	12021	12021		71.134	26.727	1				29404	3539	18630	18726	28291	28291					-0.027197170700674178
SEDKQILSA	9	Unmodified	_SEDKQILSA_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MSMS	HCT116MG_D190212_S2	2	495.7598876953125	2	495.758746	989.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.59	1	29.289	28.789	29.789	-0.30095								0	0	0	0.32081	1	10845	10845		38.615	2.5706	1				29405	949	18631	18727	28292	28292					0.007768559640453532
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;ENST00000512768.1_1_17:49231734-49237541:+|nuORF	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S1	1	567.277587890625	2	567.277303	1132.54005	0.53242	0.00030203	-0.23616	-0.00013397	0.29626	0.00016806	567.2771232678467	33.167	0.36297	33.167	33.037	33.4	0					14	6	4	0	0	0	0.005219	1	12267	12267		160.69	68.198	1	63010000			29406	9654	18632	18728	28293	28293					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;ENST00000512768.1_1_17:49231734-49237541:+|nuORF	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S1	1	378.52056884765625	3	378.520628	1132.54005	0.056434	2.1361E-05	0.13881	5.2541E-05	0.19524	7.3902E-05	378.520574824996	33.167	0.2078	33.167	33.037	33.244	0					8	3	3	0	0	0	0.39716	1	12288	12288		22.775	4.0537	1	22616000			29407	9654	18632	18728	28294	28294					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;ENST00000512768.1_1_17:49231734-49237541:+|nuORF	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S2	2	567.2780151367188	2	567.277303	1132.54005	0.75117	0.00042612	0.034254	1.9431E-05	0.78543	0.00044556	567.2772496830383	33.341	0.36064	33.148	32.966	33.327	-0.19297					15	6	3	0	0	0	0.0064252	1	12368	12368		148.27	55.777	1	289270000			29408	9654	18632	18728	28295	28295					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;ENST00000512768.1_1_17:49231734-49237541:+|nuORF	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S2	2	378.5208435058594	3	378.520628	1132.54005	0.1536	5.8139E-05	0.35155	0.00013307	0.50515	0.00019121	378.52063778441953	33.341	0.25711	33.148	33.019	33.276	-0.19297					11	4	3	0	0	0	0.0095327	1	12372	12372		114.5	47.416	1	92112000			29409	9654	18632	18728	28296	28296					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;ENST00000512768.1_1_17:49231734-49237541:+|nuORF	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S3	3	567.7791137695312	2	567.277303	1132.54005	0.46505	0.00026381	0.056226	3.1896E-05	0.52128	0.00029571	567.2772071593449	33.568	0.31145	33.278	33.096	33.408	-0.29013					13	5	3	0	0	0	0.0093047	1	12317	12317		136.39	51.12	1	59763000			29410	9654	18632	18728	28297	28297					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;ENST00000512768.1_1_17:49231734-49237541:+|nuORF	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S3	3	378.5205993652344	3	378.520628	1132.54005	-0.040449	-1.5311E-05	-0.44138	-0.00016707	-0.48183	-0.00018238	378.5205764417363	33.53	0.31145	33.24	33.096	33.408	-0.29013					12	5	3	0	0	0	0.17033	1	12327	12327		44.392	11.494	1	12465000			29411	9654	18632	18728	28298	28298					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;ENST00000512768.1_1_17:49231734-49237541:+|nuORF	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S4	4	567.277099609375	2	567.277303	1132.54005	0.69782	0.00039586	-0.067871	-3.8502E-05	0.62995	0.00035736	567.2769270490115	33.626	0.27382	33.241	33.088	33.362	-0.38426					11	5	3	0	0	0	0.0064252	1	12251	12251		148.27	62.996	1	14252000			29412	9654	18632	18728	28299	28299					-0.020914724902013404
SEDLLKEHY	9	Unmodified	_SEDLLKEHY_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;ENST00000512768.1_1_17:49231734-49237541:+|nuORF	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MSMS	HCT116MG_D190212_S4	4	378.5206298828125	3	378.520628	1132.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.679	1	33.295	32.795	33.795	-0.38426								0	0	0	0.58014	1	12268	12268		24.882	12.707	1				29413	9654	18632	18728	28300	28300					-0.020914724902013404
SEDLYLLFQK	10	Unmodified	_SEDLYLLFQK_					0	0	0			REV__ENSG00000272047|ENST00000607778|GTF2H5	REV__ENSG00000272047|ENST00000607778|GTF2H5	MSMS	HCT116MG_D190212_S4	4	628.3320922851562	2	628.332079	1254.6496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.315	1	43.941	43.441	44.441	-0.37373								0	0	0	0.95507	1	16322	16322		3.5965	0	1		+		29414	14441	18633	18729	28301	28301					0.03246533129117779
SEDNIINKF	9	Unmodified	_SEDNIINKF_					0	0	0		KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant;nc|ENSG00000100433|P57789|KCNK10;nc|ENSG00000100433|P57789-4|KCNK10;ENSG00000100433|ENST00000319231|KCNK10	KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant	KCNK10|p.K492Rfs*13|1|0.12|ENSG00000100433|chr14:88185677-88185677|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	540.118896484375	2	540.272021	1078.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.114	1	41.738	41.238	42.238	-0.37565								0	0	0	0.42657	1	15466	15466		32.305	16.458	1				29415	1710	18634	18730	28302	28302					-0.006634551446268233
SEDPKFREA	9	Unmodified	_SEDPKFREA_					0	0	0		nc|ENSG00000035403|P18206-2|VCL;ENSG00000035403|ENST00000211998|VCL	nc|ENSG00000035403|P18206-2|VCL	nc|ENSG00000035403|P18206-2|VCL	MULTI-MSMS	HCT116MG_D190212_S2	2	539.76171875	2	539.76182	1077.50909	0.37207	0.00020083	-0.58376	-0.00031509	-0.2117	-0.00011427	539.7617412553966	21.682	0.3115	21.297	21.115	21.427	-0.38503					8	5	2	0	0	0	0.037825	1	7661	7661		80.676	40.726	1	17977000			29416	980	18635	18731	28303	28303					-0.026566258044113056
SEDPKFREA	9	Unmodified	_SEDPKFREA_					0	0	0		nc|ENSG00000035403|P18206-2|VCL;ENSG00000035403|ENST00000211998|VCL	nc|ENSG00000035403|P18206-2|VCL	nc|ENSG00000035403|P18206-2|VCL	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7618408203125	2	539.76182	1077.50909	0.30738	0.00016591	-0.14544	-7.8503E-05	0.16194	8.7407E-05	539.761683805355	20.966	0.31225	21.001	20.818	21.131	0.034473					12	5	3	0	0	0	0.035298	1	7285	7285		81.915	41.966	1	12860000			29417	980	18635	18731	28304	28304					-0.026566258044113056
SEDPKFREA	9	Unmodified	_SEDPKFREA_					0	0	0		nc|ENSG00000035403|P18206-2|VCL;ENSG00000035403|ENST00000211998|VCL	nc|ENSG00000035403|P18206-2|VCL	nc|ENSG00000035403|P18206-2|VCL	MSMS	HCT116MG_D190212_S3	3	360.177001953125	3	360.176972	1077.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.995	1	21.029	20.529	21.529	0.034473								0	0	0	0.1947	1	7293	7293		37.075	14.417	1				29418	980	18635	18731	28305	28305					-0.026566258044113056
SEDPKFREA	9	Unmodified	_SEDPKFREA_					0	0	0		nc|ENSG00000035403|P18206-2|VCL;ENSG00000035403|ENST00000211998|VCL	nc|ENSG00000035403|P18206-2|VCL	nc|ENSG00000035403|P18206-2|VCL	MSMS	HCT116MG_D190212_S4	4	539.761474609375	2	539.76182	1077.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.418	1	21.2	20.7	21.7	-0.21832								0	0	0	0.57787	1	7392	7392		24.991	2.2547	1				29419	980	18635	18731	28306	28306					-0.026566258044113056
SEDPKNNIP	9	Unmodified	_SEDPKNNIP_					0	0	0		HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P367Qfs*16|1|0.4|ENSG00000172534|chrX:153960146-153960146|G/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant	HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	507.2481994628906	2	507.248546	1012.48254	0.44627	0.00022637	-0.41998	-0.00021303	0.026297	1.3339E-05	507.24833379193694	25.252	0.52135	24.877	24.66	25.181	-0.37521					17	9	2	0	0	0	0.061422	1	9089	9089		69.105	23.405	1	18121000			29420	5251	18636	18732	28307	28307					-0.023203146957712306
SEDPKNNIP	9	Unmodified	_SEDPKNNIP_					0	0	0		HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P367Qfs*16|1|0.4|ENSG00000172534|chrX:153960146-153960146|G/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant	HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	507.248779296875	2	507.248546	1012.48254	0.33543	0.00017014	0.07702	3.9068E-05	0.41245	0.00020921	507.24850648929186	25.299	0.57216	25.019	24.798	25.37	-0.27958					14	10	2	0	0	0	0.19461	1	8927	8927		41.84	1.8899	1	2402900			29421	5251	18636	18732	28308	28308					-0.023203146957712306
SEDRPGKEP	9	Unmodified	_SEDRPGKEP_					0	0	0		ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-MSMS	HCT116MG_D190212_S1	1	507.74627685546875	2	507.74617	1013.47779	0.42483	0.0002157	-0.15636	-7.9391E-05	0.26847	0.00013631	507.7460003640795	15.197	0.57358	15.197	15.014	15.588	0					24	10	3	0	0	0	0.10482	1	5042	5042		57.249	18.634	1	7257400			29422	2555	18637	18733	28309	28309					-0.028411988385187215
SEDRPGKEP	9	Unmodified	_SEDRPGKEP_					0	0	0		ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-MSMS	HCT116MG_D190212_S2	2	507.7466125488281	2	507.74617	1013.47779	0.25302	0.00012847	-0.039516	-2.0064E-05	0.2135	0.0001084	507.7459847527585	11.652	0.39014	11.37	11.244	11.634	-0.28186					25	15	2	0	0	0	0.61923	1	3758	3758		10.074	2.7847	1	907410			29423	2555	18637	18733	28310	28310					-0.028411988385187215
SEDRPGKEP	9	Unmodified	_SEDRPGKEP_					0	0	0		ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-MSMS	HCT116MG_D190212_S2	2	507.74591064453125	2	507.74617	1013.47779	0.2545	0.00012922	0.023057	1.1707E-05	0.27755	0.00014093	507.74611436948993	15.216	1.1472	14.889	14.654	15.801	-0.32684					45	21	3	0	0	0	0.004234	1	5029	5029		147.24	73.041	1	51089000			29424	2555	18637	18733	28311	28311					-0.028411988385187215
SEDSRFITV	9	Unmodified	_SEDSRFITV_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.E1273*|1|0.29|ENSG00000144724|chr3:62281605-62281606|-/TGAACTGT|frameshift_variant;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant;PTPRG|p.A885Efs*11|1|0.09|ENSG00000144724|chr3:62262891-62262892|-/AAACAAAGGAA|frameshift_variant	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	HCT116MG_D190212_S1	1	527.26416015625	2	527.264196	1052.51384	0.19687	0.0001038	-0.17301	-9.1221E-05	0.023867	1.2584E-05	527.2640420320952	41.015	0.23543	41.015	40.897	41.133	0					7	4	2	0	0	0	0.043159	1	15439	15439		78.06	21.883	1	15757000			29425	3879	18638	18734	28312	28312					-0.01031741661677188
SEDSRFITV	9	Unmodified	_SEDSRFITV_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.E1273*|1|0.29|ENSG00000144724|chr3:62281605-62281606|-/TGAACTGT|frameshift_variant;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant;PTPRG|p.A885Efs*11|1|0.09|ENSG00000144724|chr3:62262891-62262892|-/AAACAAAGGAA|frameshift_variant	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2640991210938	2	527.264196	1052.51384	0.38897	0.00020509	-0.02363	-1.2459E-05	0.36534	0.00019263	527.2641493986386	41.033	0.31076	40.964	40.777	41.088	-0.069481					9	5	2	0	0	0	0.01386	1	15483	15483		103.82	47.647	1	91420000			29426	3879	18638	18734	28313	28313					-0.01031741661677188
SEDSRFITV	9	Unmodified	_SEDSRFITV_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.E1273*|1|0.29|ENSG00000144724|chr3:62281605-62281606|-/TGAACTGT|frameshift_variant;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant;PTPRG|p.A885Efs*11|1|0.09|ENSG00000144724|chr3:62262891-62262892|-/AAACAAAGGAA|frameshift_variant	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	HCT116MG_D190212_S3	3	527.26416015625	2	527.264196	1052.51384	0.39947	0.00021063	-0.28896	-0.00015236	0.11051	5.8271E-05	527.2639916809469	41.224	0.31293	40.922	40.736	41.049	-0.30185					17	5	4	0	0	0	0.012531	1	15328	15328		107.1	35.966	1	43218000			29427	3879	18638	18734	28314	28314					-0.01031741661677188
SEDSRFITV	9	Unmodified	_SEDSRFITV_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.E1273*|1|0.29|ENSG00000144724|chr3:62281605-62281606|-/TGAACTGT|frameshift_variant;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant;PTPRG|p.A885Efs*11|1|0.09|ENSG00000144724|chr3:62262891-62262892|-/AAACAAAGGAA|frameshift_variant	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MSMS	HCT116MG_D190212_S4	4	527.263916015625	2	527.264196	1052.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.365	1	40.988	40.488	41.488	-0.37732								0	0	0	0.018466	1	15203	15203		93.938	37.761	1				29428	3879	18638	18734	28315	28315					-0.01031741661677188
SEDWWEMKRKW	11	Unmodified	_SEDWWEMKRKW_					0	0	0			REV__ENSG00000260097|ENST00000563237|SPDYE6	REV__ENSG00000260097|ENST00000563237|SPDYE6	MSMS	HCT116MG_D190212_S3	3	790.404052734375	2	790.869368	1579.72418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.485	1	57.211	56.711	57.711	-0.27434								0	0	0	0.95954	1	21847	21847		1.3295	0	1		+		29429	13280	18639	18735	28316	28316					-0.042490273311614146
SEEDLSKL	8	Unmodified	_SEEDLSKL_					0	0	0		tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1	tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1	tr|U7SQJ3|U7SQJ3_FUSNUNitroreductasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01657PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	460.7328186035156	2	460.732197	919.449842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.386	1	33.004	32.504	33.504	-0.38223								0	0	0	0.8837	1	12153	12153		11.64	0	1				29430	18388	18640	18736	28317	28317					-0.013105218186183265
SEEDRVVVIRF	11	Unmodified	_SEEDRVVVIRF_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	HCT116MG_D190212_S2	2	674.8651733398438	2	674.864608	1347.71466	0.22958	0.00015493	-0.0042041	-2.8372E-06	0.22537	0.0001521	674.8646093197274	46.276	0.30959	46.169	46.012	46.322	-0.10672					18	5	4	0	0	0	0.00034142	1	17627	17627		196.06	128.22	1	45864000			29431	3734	18641	18737	28318	28318					0.05471527654981401
SEEDRVVVIRF	11	Unmodified	_SEEDRVVVIRF_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	HCT116MG_D190212_S2	2	450.2455139160156	3	450.245498	1347.71466	0.10036	4.5189E-05	-0.64035	-0.00028832	-0.53999	-0.00024313	450.2452270126065	46.275	0.2577	46.168	46.012	46.27	-0.10653					11	4	3	0	0	0	0.10802	1	17639	17639		87.878	58.587	1	20655000			29432	3734	18641	18737	28319	28319					0.05471527654981401
SEEDRVVVIRF	11	Unmodified	_SEEDRVVVIRF_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	HCT116MG_D190212_S3	3	674.8651733398438	2	674.864608	1347.71466	1.0691	0.00072147	-0.17886	-0.0001207	0.89021	0.00060077	674.8641722055196	46.569	0.26048	46.257	46.126	46.387	-0.31237					10	4	3	0	0	0	3.034E-05	1	17474	17474		168.9	123.16	1	10689000			29433	3734	18641	18737	28320	28320					0.05471527654981401
SEEDRVVVIRF	11	Unmodified	_SEEDRVVVIRF_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	HCT116MG_D190212_S3	3	450.2460021972656	3	450.245498	1347.71466	0.28234	0.00012712	0.014494	6.5257E-06	0.29684	0.00013365	450.2454920428558	46.569	0.26038	46.257	46.075	46.335	-0.31237					7	4	2	0	0	0	0.19589	1	17480	17480		75.941	51.712	1	8292900			29434	3734	18641	18737	28321	28321					0.05471527654981401
SEEDRVVVIRF	11	Unmodified	_SEEDRVVVIRF_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	HCT116MG_D190212_S4	4	674.8648681640625	2	674.864608	1347.71466	0.79416	0.00053595	-0.5116	-0.00034526	0.28256	0.00019069	674.8644999402462	46.621	0.18834	46.25	46.14	46.328	-0.37134					8	3	3	0	0	0	0.031219	1	17234	17234		146.48	113.04	1	5126300			29435	3734	18641	18737	28322	28322					0.05471527654981401
SEEDRVVVIRF	11	Unmodified	_SEEDRVVVIRF_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MATCH	HCT116MG_D190212_S1	1		2	674.864608	1347.71466	0.85664	0.00057812	-1.0281	-0.00069382	-0.17145	-0.00011571	674.8642484983869	46.239	0.2068	46.239	46.13	46.337	0	0.01039	-0.0010893	NaN	168.9	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6877100			29436	3734	18641	18737							0.05471527654981401
SEEDRVVVIRF	11	Unmodified	_SEEDRVVVIRF_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MATCH	HCT116MG_D190212_S1	1		3	450.245498	1347.71466	0.20227	9.1069E-05	-0.36852	-0.00016593	-0.16626	-7.4856E-05	450.57966658709574	46.311	0.15509	46.311	46.182	46.337	0	0.06591	-1.5242E-05	NaN	87.878	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6712100			29437	3734	18641	18737							0.05471527654981401
SEEEFLRTY	9	Unmodified	_SEEEFLRTY_					0	0	0		ENSG00000178585|ENST00000377263|CTNNBIP1	ENSG00000178585|ENST00000377263|CTNNBIP1	ENSG00000178585|ENST00000377263|CTNNBIP1	MSMS	HCT116MG_D190212_S3	3	587.27490234375	2	587.274761	1172.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.84	1	41.537	41.037	42.037	-0.30257								0	0	0	0.26976	1	15568	15568		42.312	7.9108	1				29438	5507	18642	18738	28323	28323					-0.04439776352796798
SEEEGVPST	9	Unmodified	_SEEEGVPST_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	HCT116MG_D190212_S3	3	934.4003295898438	1	934.399997	933.392721	0.66472	0.00062112	0.56248	0.00052558	1.2272	0.0011467	934.4003313470229	22.888	0.30001	22.87	22.699	22.999	-0.018869					7	5	2	0	0	0	0.042978	1	8080	8080		78.149	13.913	1	3920000			29439	5121	18643	18739	28324	28324					-0.07663989094987755
SEEEIREAF	9	Unmodified	_SEEEIREAF_					0	0	0		ENST00000585658.1_1_17:68237680-68237866:+|nuORF;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2	ENST00000585658.1_1_17:68237680-68237866:+|nuORF	ENST00000585658.1_1_17:68237680-68237866:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	555.2587890625	2	555.259111	1108.50367	0.42408	0.00023547	-0.21474	-0.00011923	0.20934	0.00011624	555.2590365789574	37.785	0.31313	37.785	37.602	37.916	0					10	5	3	0	0	0	0.0082095	1	14137	14137		117.76	70.012	1	12909000			29440	3839	18644	18740	28325	28325					-0.04624349386904214
SEEEIREAF	9	Unmodified	_SEEEIREAF_					0	0	0		ENST00000585658.1_1_17:68237680-68237866:+|nuORF;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2	ENST00000585658.1_1_17:68237680-68237866:+|nuORF	ENST00000585658.1_1_17:68237680-68237866:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	555.2591552734375	2	555.259111	1108.50367	0.10647	5.9118E-05	0.035906	1.9937E-05	0.14237	7.9055E-05	555.2591048387159	37.82	0.30909	37.727	37.548	37.857	-0.09301					8	5	2	0	0	0	0.0059958	1	14215	14215		128.93	72.755	1	36245000			29441	3839	18644	18740	28326	28326					-0.04624349386904214
SEEEIREAF	9	Unmodified	_SEEEIREAF_					0	0	0		ENST00000585658.1_1_17:68237680-68237866:+|nuORF;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2	ENST00000585658.1_1_17:68237680-68237866:+|nuORF	ENST00000585658.1_1_17:68237680-68237866:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	555.761962890625	2	555.259111	1108.50367	0.49664	0.00027576	-0.10353	-5.7489E-05	0.3931	0.00021827	555.2586899876968	38.012	0.25183	37.711	37.633	37.885	-0.30137					13	5	3	0	0	0	0.0038512	1	14071	14071		152.89	78.686	1	22961000			29442	3839	18644	18740	28327	28327					-0.04624349386904214
SEEEIREAF	9	Unmodified	_SEEEIREAF_					0	0	0		ENST00000585658.1_1_17:68237680-68237866:+|nuORF;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2	ENST00000585658.1_1_17:68237680-68237866:+|nuORF	ENST00000585658.1_1_17:68237680-68237866:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	555.2581787109375	2	555.259111	1108.50367	0.15282	8.4852E-05	-0.08113	-4.5048E-05	0.071686	3.9804E-05	555.2589617064195	38.169	0.29503	37.786	37.66	37.955	-0.38283					9	6	2	0	0	0	0.0038512	1	13986	13986		152.89	76.061	1	9321900			29443	3839	18644	18740	28328	28328					-0.04624349386904214
SEEELKKAY	9	Unmodified	_SEEELKKAY_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	HCT116MG_D190212_S1	1	548.7802124023438	2	548.779679	1095.5448	0.51246	0.00028123	-0.10754	-5.9016E-05	0.40491	0.00022221	548.7797934401159	22.156	0.15676	22.156	22.063	22.22	0					4	2	2	0	0	0	0.053544	1	7855	7855		72.968	32.729	1	3029000			29444	5026	18645	18741	28329	28329					0.0008541165257156536
SEEELKKAY	9	Unmodified	_SEEELKKAY_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	HCT116MG_D190212_S2	2	548.7796020507812	2	548.779679	1095.5448	0.4587	0.00025173	0.10842	5.9496E-05	0.56712	0.00031122	548.7796279208972	22.721	0.25992	22.336	22.206	22.466	-0.3852					9	4	3	0	0	0	0.030039	1	8087	8087		86.332	38.6	1	26306000			29445	5026	18645	18741	28330	28330					0.0008541165257156536
SEEELKKAY	9	Unmodified	_SEEELKKAY_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	HCT116MG_D190212_S3	3	548.7800903320312	2	548.779679	1095.5448	0.41335	0.00022684	-0.075787	-4.159E-05	0.33757	0.00018525	548.7796599829351	22.103	0.26021	22.104	21.99	22.25	0.00074387					9	4	3	0	0	0	0.0046822	1	7745	7745		140.63	39.925	1	8220600			29446	5026	18645	18741	28331	28331					0.0008541165257156536
SEEELKKAY	9	Unmodified	_SEEELKKAY_					0	0	0		ENSG00000168724|ENST00000648817|DNAJC21;nc|ENSG00000168724|Q5F1R6-3|DNAJC21;nc|ENSG00000168724|Q5F1R6-2|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	ENSG00000168724|ENST00000648817|DNAJC21	MULTI-MSMS	HCT116MG_D190212_S4	4	548.7796020507812	2	548.779679	1095.5448	0.51414	0.00028215	-0.58805	-0.00032271	-0.073903	-4.0556E-05	548.7794197165551	22.416	0.15575	22.188	22.091	22.247	-0.22777					4	2	2	0	0	0	0.0201	1	7818	7818		96.367	33.139	1	2349600			29447	5026	18645	18741	28332	28332					0.0008541165257156536
SEEEMMHCWHC	11	Unmodified	_SEEEMMHCWHC_					0	0	0			REV__SPATA20|p.G180Afs*10|1|0.12|ENSG00000006282|chr17:50549109-50549109|G/-|frameshift_variant	REV__SPATA20|p.G180Afs*10|1|0.12|ENSG00000006282|chr17:50549109-50549109|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	474.7245788574219	3	474.496226	1420.46685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.551	1	34.254	33.754	34.754	-0.29707								0	0	0	0.96121	1	12722	12722		0.45452	0.29519	1		+		29448	10487	18646	18742	28333	28333					-0.22656751862632518
SEEEPPKKTA	10	Unmodified	_SEEEPPKKTA_					0	0	0		ENST00000512145.1_1_6:18237336-18256602:-|nuORF;nc|ENSG00000124795|P35659-2|DEK;DEK|p.E372Sfs*2|1|0.2|ENSG00000124795|chr6:18226177-18226177|T/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK	ENST00000512145.1_1_6:18237336-18256602:-|nuORF	ENST00000512145.1_1_6:18237336-18256602:-|nuORF	MSMS	HCT116MG_D190212_S2	2	558.28271484375	2	558.282586	1114.55062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.41	1	14.091	13.591	14.591	-0.31952								0	0	0	0.91971	1	4715	4715		11.495	3.5846	1				29449	662	18647	18743	28334	28334					-0.0020748983574776503
SEEFKQAKFRE	11	Unmodified	_SEEFKQAKFRE_					0	0	0		tr|U7SWR7|U7SWR7_FUSNUATP-dependent6-phosphofructokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pfkAPE=3SV=1	tr|U7SWR7|U7SWR7_FUSNUATP-dependent6-phosphofructokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pfkAPE=3SV=1	tr|U7SWR7|U7SWR7_FUSNUATP-dependent6-phosphofructokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pfkAPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	699.855712890625	2	699.854241	1397.69393	1.0181	0.00071249	-0.24209	-0.00016943	0.77597	0.00054306	699.8540579723882	32.918	0.462	32.633	32.3	32.762	-0.28511					21	11	3	0	0	0	0.72004	1	12013	12013		14.405	2.9107	1	15109000			29450	18505	18648	18744	28335	28335					0.010989372753101634
SEEFKQAKFRE	11	Unmodified	_SEEFKQAKFRE_					0	0	0		tr|U7SWR7|U7SWR7_FUSNUATP-dependent6-phosphofructokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pfkAPE=3SV=1	tr|U7SWR7|U7SWR7_FUSNUATP-dependent6-phosphofructokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pfkAPE=3SV=1	tr|U7SWR7|U7SWR7_FUSNUATP-dependent6-phosphofructokinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pfkAPE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	699.854241	1397.69393	0.87281	0.00061084	0.25267	0.00017683	1.1255	0.00078767	699.8541776185871	32.868	0.4662	32.657	32.273	32.739	-0.21135	0.012098	0.00046117	NaN	14.405	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22934000			29451	18505	18648	18744							0.010989372753101634
SEEFNYASP	9	Unmodified	_SEEFNYASP_					0	0	0			REV__ENSG00000050555|ENST00000361069|LAMC3	REV__ENSG00000050555|ENST00000361069|LAMC3	MSMS	HCT116MG_D190212_S1	1	522.2195434570312	2	522.219454	1042.42436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.219	1	25.219	24.719	25.719	0								0	0	0	0.67173	1	9062	9062		20.454	4.6064	1		+		29452	10620	18649	18745	28336	28336					-0.09515996341065147
SEEFPSFGA	9	Unmodified	_SEEFPSFGA_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;ENST00000494862.1_1_2:242169018-242169382:-|nuORF;ENST00000487169.5_1_2:242169018-242169255:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S3	3	970.4166259765625	1	970.415253	969.407977	0.80215	0.00077842	0.22498	0.00021832	1.0271	0.00099674	970.4151539228991	48.878	0.57405	48.562	48.296	48.87	-0.31596					23	10	3	0	0	0	0.004194	1	18349	18349		147.83	55.009	1	11416000			29453	2480	18650	18746	28337	28337					-0.07795077507125825
SEEFPSFGA	9	Unmodified	_SEEFPSFGA_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;ENST00000494862.1_1_2:242169018-242169382:-|nuORF;ENST00000487169.5_1_2:242169018-242169255:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MATCH	HCT116MG_D190212_S2	2		1	970.415253	969.407977	0.76916	0.00074641	0.14502	0.00014073	0.91418	0.00088713	970.4146000812433	48.641	0.25368	48.498	48.388	48.642	-0.1437	-0.032035	-6.5792E-05	NaN	147.83	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22576000			29454	2480	18650	18746							-0.07795077507125825
SEEFVDPKSHK	11	Unmodified	_SEEFVDPKSHK_					0	0	0		ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	MSMS	HCT116MG_D190212_S4	4	434.88238525390625	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.187	1	9.9874	9.4874	10.487	-0.1993								0	0	0	0.96003	1	3122	3122		0.36667	0	1				29455	4550	18651	18747	28338	28338					-0.013567270243811436
SEEGGHVAV	9	Unmodified	_SEEGGHVAV_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MSMS	HCT116MG_D190212_S3	3	442.7095031738281	2	442.709057	883.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.57	1	22.551	22.051	23.051	-0.018869								0	0	0	0.61599	1	7925	7925		23.148	6.0619	1				29456	2412	18652	18748	28339	28339					-0.042805419300407266
SEEGHPFKA	9	Unmodified	_SEEGHPFKA_					0	0	0		nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-5|RTN3;nc|ENSG00000133318|O95197-4|RTN3	nc|ENSG00000133318|O95197-7|RTN3	nc|ENSG00000133318|O95197-7|RTN3	MULTI-MSMS	HCT116MG_D190212_S3	3	501.7464904785156	2	501.237981	1000.46141	0.29078	0.00014575	0.78191	0.00039192	1.0727	0.00053767	501.23830400283236	20.914	0.26022	20.949	20.766	21.027	0.034473					7	4	2	0	0	0	0.0080847	2	7257	7257;7270		118.07	25.415	1	4676200			29457	3237	18653	18749	28340;28341	28340					-0.03880280004614178
SEEKPHVVA	9	Unmodified	_SEEKPHVVA_					0	0	0		nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1	nc|ENSG00000104812|P13807-2|GYS1	nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	HCT116MG_D190212_S2	2	498.26190185546875	2	498.261456	994.50836	0.33856	0.00016869	0.15094	7.5207E-05	0.48949	0.0002439	498.2614959071645	19.921	0.25867	19.546	19.403	19.661	-0.37503					9	4	3	0	0	0	0.41881	1	6957	6957		21.537	5.3879	1	6613000			29458	1953	18654	18750	28342	28342					0.010885795465242154
SEEKPVPAA	9	Unmodified	_SEEKPVPAA_					0	0	0		nc|ENSG00000189159|Q9UK76-3|JPT1;ENSG00000189159|ENST00000409753|JPT1	nc|ENSG00000189159|Q9UK76-3|JPT1	nc|ENSG00000189159|Q9UK76-3|JPT1	MULTI-MSMS	HCT116MG_D190212_S1	1	464.2427978515625	2	464.242732	926.470912	0.20716	9.6173E-05	-0.038324	-1.7792E-05	0.16884	7.8381E-05	464.24260211606486	20.149	0.26126	20.149	19.966	20.227	0					7	4	2	0	0	0	0.14362	1	7040	7040		49.554	3.5333	1	2870600			29459	6024	18655	18751	28343	28343					0.0047348828089752715
SEEKPVPAA	9	Unmodified	_SEEKPVPAA_					0	0	0		nc|ENSG00000189159|Q9UK76-3|JPT1;ENSG00000189159|ENST00000409753|JPT1	nc|ENSG00000189159|Q9UK76-3|JPT1	nc|ENSG00000189159|Q9UK76-3|JPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	464.2425842285156	2	464.242732	926.470912	0.20005	9.287E-05	-0.29901	-0.00013881	-0.098964	-4.5943E-05	464.24247242777943	20.642	0.26388	20.262	20.13	20.394	-0.37949					11	4	3	0	0	0	0.026999	1	7248	7248		89.401	21.32	1	21159000			29460	6024	18655	18751	28344	28344					0.0047348828089752715
SEEKPVPAA	9	Unmodified	_SEEKPVPAA_					0	0	0		nc|ENSG00000189159|Q9UK76-3|JPT1;ENSG00000189159|ENST00000409753|JPT1	nc|ENSG00000189159|Q9UK76-3|JPT1	nc|ENSG00000189159|Q9UK76-3|JPT1	MULTI-MSMS	HCT116MG_D190212_S3	3	464.24267578125	2	464.242732	926.470912	0.29017	0.00013471	-0.054075	-2.5104E-05	0.2361	0.00010961	464.2426033213233	19.925	0.52094	19.973	19.791	20.311	0.048107					21	9	3	0	0	0	0.026999	1	6863	6863		89.401	30.722	1	28177000			29461	6024	18655	18751	28345	28345					0.0047348828089752715
SEEKPVPAA	9	Unmodified	_SEEKPVPAA_					0	0	0		nc|ENSG00000189159|Q9UK76-3|JPT1;ENSG00000189159|ENST00000409753|JPT1	nc|ENSG00000189159|Q9UK76-3|JPT1	nc|ENSG00000189159|Q9UK76-3|JPT1	MULTI-MSMS	HCT116MG_D190212_S4	4	464.2427062988281	2	464.242732	926.470912	0.0054634	2.5363E-06	0.05301	2.461E-05	0.058474	2.7146E-05	464.24269707949577	20.216	0.46779	20.014	19.833	20.3	-0.20133					19	8	3	0	0	0	0.082877	2	6907	6907;6966		61.602	9.3336	1	11767000			29462	6024	18655	18751	28346;28347	28346					0.0047348828089752715
SEELLREHY	9	Unmodified	_SEELLREHY_					0	0	0		ENST00000564252.1_1_16:1820880-1821211:-|nuORF;ENST00000563854.1_2_16:1820656-1821336:-|nuORF;ENSG00000103024|ENST00000219302|NME3	ENST00000564252.1_1_16:1820880-1821211:-|nuORF	ENST00000564252.1_1_16:1820880-1821211:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	588.2893676757812	2	588.288202	1174.56185	0.45858	0.00026978	0.75754	0.00044565	1.2161	0.00071543	588.2886156860606	32.354	0.25978	32.124	31.995	32.254	-0.23009					7	4	2	0	0	0	0.056114	1	11998	11998		71.708	37.306	1	21316000			29463	1870	18656	18752	28348	28348					-0.018446677416022794
SEELPKKEA	9	Unmodified	_SEELPKKEA_					0	0	0		ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7750244140625	2	515.774396	1029.53424	0.14642	7.5521E-05	0.8845	0.0004562	1.0309	0.00053172	515.7744062302341	18.084	0.20863	17.728	17.597	17.806	-0.35647					8	3	3	0	0	0	0.06555	1	6208	6208		67.081	2.154	1	19980000			29464	1706	18657	18753	28349	28349					0.02065428998139396
SEELPKKEA	9	Unmodified	_SEELPKKEA_					0	0	0		ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7744140625	2	515.774396	1029.53424	0.058509	3.0177E-05	0.22852	0.00011787	0.28703	0.00014804	515.7745041737624	17.01	0.26028	17.094	16.912	17.173	0.084467					9	4	3	0	0	0	0.0064416	1	5687	5687		125.04	38.706	1	8054300			29465	1706	18657	18753	28350	28350					0.02065428998139396
SEELPKKEA	9	Unmodified	_SEELPKKEA_					0	0	0		ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7745971679688	2	515.774396	1029.53424	-0.11329	-5.8434E-05	0.33685	0.00017374	0.22356	0.00011531	515.77441219164	17.317	0.20665	17.147	17.018	17.225	-0.17047					6	3	2	0	0	0	0.031831	1	5744	5744		84.522	21.949	1	3288400			29466	1706	18657	18753	28351	28351					0.02065428998139396
SEELPRRPA	9	Unmodified	_SEELPRRPA_					0	0	0		ENST00000359139.7_1_22:50781822-50810543:+|nuORF	ENST00000359139.7_1_22:50781822-50810543:+|nuORF	ENST00000359139.7_1_22:50781822-50810543:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	527.7846069335938	2	527.78563	1053.55671	0.27379	0.0001445	-0.52686	-0.00027807	-0.25307	-0.00013357	527.7853961680083	21.15	0.31215	21.176	20.914	21.226	0.025808					8	5	2	0	0	0	0.071914	1	7359	7359		63.961	31.175	1	3174000			29467	7330	18658	18754	28352	28352					0.03207073186422349
SEELQKEAMQS	11	Unmodified	_SEELQKEAMQS_					0	0	0			REV__nc|ENSG00000090889|O95239-2|KIF4A	REV__nc|ENSG00000090889|O95239-2|KIF4A	MULTI-MSMS	HCT116MG_D190212_S3	3	640.1663208007812	2	640.295367	1278.57618	0.59862	0.00038329	-2.7609	-0.0017678	-2.1623	-0.0013845	640.2941754800628	43.52	0.31212	43.214	43.032	43.344	-0.30616					9	5	2	0	0	0	0.71776	1	16174	16174		15.248	2.206	1	5248000	+		29468	17091	18659	18755	28353	28353					-0.051963833756417444
SEELRDPA	8	Unmodified	_SEELRDPA_					0	0	0		GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant;ENSG00000075240|ENST00000406902|GRAMD4	GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant	GRAMD4|p.M533Ifs*29|1|0.42|ENSG00000075240|chr22:46676620-46676621|-/CCAGGCTCAGGCATTG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	458.7218322753906	2	458.722164	915.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.801	1	23.544	23.044	24.044	-0.25727								0	0	0	0.8837	1	8353	8353		9.3474	0	1				29469	1312	18660	18756	28354	28354					-0.03132272758580257
SEELVQKY	8	Unmodified	_SEELVQKY_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MSMS	HCT116MG_D190212_S1	1	498.25555419921875	2	498.25584	994.497126	0.3764	0.00018754	-0.28137	-0.00014019	0.095034	4.7351E-05	498.2556470935118	29.711	0.20756	29.711	29.581	29.789	0					5	3	2	0	0	0	0.0095316	1	10875	10875		164.52	79.158	1	10574000			29470	2461	18661	18757	28355	28355					-0.0003424254762194323
SEELVQKY	8	Unmodified	_SEELVQKY_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MSMS	HCT116MG_D190212_S2	2	498.2559509277344	2	498.25584	994.497126	0.049664	2.4745E-05	0.60852	0.0003032	0.65818	0.00032794	498.2560303540129	30.08	0.36114	29.796	29.564	29.925	-0.28453					11	6	2	0	0	0	0.02422	1	11050	11050		197.17	100.09	1	38816000			29471	2461	18661	18757	28356	28356					-0.0003424254762194323
SEELVQKY	8	Unmodified	_SEELVQKY_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2558898925781	2	498.25584	994.497126	0.45698	0.00022769	-0.18961	-9.4476E-05	0.26737	0.00013322	498.25564331518876	30.137	0.31527	29.887	29.702	30.017	-0.24946					9	5	2	0	0	0	0.023571	1	10975	10975		196.65	99.574	1	27561000			29472	2461	18661	18757	28357	28357					-0.0003424254762194323
SEELVQKY	8	Unmodified	_SEELVQKY_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MSMS	HCT116MG_D190212_S4	4	498.2560119628906	2	498.25584	994.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.363	1	30.006	29.506	30.506	-0.3571								0	0	0	2.1963E-06	1	11004	11004		133.7	62.986	1				29473	2461	18661	18757	28358	28358					-0.0003424254762194323
SEELVQKY	8	Unmodified	_SEELVQKY_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MATCH	HCT116MG_D190212_S4	4		2	498.25584	994.497126	0.41924	0.00020889	0.048879	2.4354E-05	0.46812	0.00023325	498.25565563429507	30.292	0.30217	29.935	29.701	30.003	-0.3571	0.10261	4.2942E-05	NaN	164.52	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8860200			29474	2461	18661	18757							-0.0003424254762194323
SEENSHFL	8	Unmodified	_SEENSHFL_					0	0	0			REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	481.71368408203125	2	481.714339	961.414125	0.20785	0.00010013	-0.060804	-2.929E-05	0.14705	7.0836E-05	481.7141481712934	23.708	0.20795	23.325	23.195	23.403	-0.38324					5	3	2	0	0	0	0.77285	1	8481	8481		14.582	5.2343	1	7948100	+		29475	9908	18662	18758	28359	28359					-0.06812559275613239
SEEPFNGSQEE	11	Unmodified	_SEEPFNGSQEE_					0	0	0			REV__nc|ENSG00000151490|Q16827-5|PTPRO	REV__nc|ENSG00000151490|Q16827-5|PTPRO	MULTI-MSMS	HCT116MG_D190212_S1	1	1252.4971923828125	1	1252.49642	1251.48914	0.55267	0.00069222	0.13348	0.00016718	0.68615	0.0008594	1252.4963627252132	25.41	0.25994	25.41	25.249	25.509	0					10	4	3	0	0	0	0.57136	1	9154	9154		38.615	7.3464	1	9947100	+		29476	10176	18663	18759	28360	28360					-0.1265446632567091
SEEPFNGSQEE	11	Unmodified	_SEEPFNGSQEE_					0	0	0			REV__nc|ENSG00000151490|Q16827-5|PTPRO	REV__nc|ENSG00000151490|Q16827-5|PTPRO	MULTI-MSMS	HCT116MG_D190212_S2	2	1252.4993896484375	1	1252.49642	1251.48914	0.49676	0.00062219	0.16087	0.00020149	0.65763	0.00082368	1252.496501574058	25.721	0.31113	25.352	25.187	25.498	-0.36914					12	5	3	0	0	0	0.57136	1	9275	9275		38.615	3.6827	1	38260000	+		29477	10176	18663	18759	28361	28361					-0.1265446632567091
SEEPGAPLP	9	Unmodified	_SEEPGAPLP_					0	0	0		SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;SMTN|p.S536Vfs*33|1|0.33|ENSG00000183963|chr22:31091813-31091813|C/-|frameshift_variant;ENST00000489337.5_1_22:31484532-31494796:+|nuORF;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN	SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant	SMTN|p.G455Afs*3|1|0.38|ENSG00000183963|chr22:31091383-31091383|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	896.4360961914062	1	896.435989	895.428712	0.79366	0.00071147	1.2034	0.0010788	1.997	0.0017902	896.4360608404432	35.922	0.81987	35.622	35.482	36.302	-0.30042					21	15	2	0	0	0	0.0082751	2	13276	13276;13518		117.6	46.883	1	3930700			29478	5752	18664	18760	28362;28363	28362					-0.023184871274793295
SEEPVMEKP	9	Unmodified	_SEEPVMEKP_					0	0	0		ENST00000394231.7_1_17:37885815-37885993:-|nuORF	ENST00000394231.7_1_17:37885815-37885993:-|nuORF	ENST00000394231.7_1_17:37885815-37885993:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	523.246826171875	2	523.247157	1044.47976	0.41186	0.0002155	-0.0082662	-4.3253E-06	0.40359	0.00021118	523.2471847482651	27.368	0.57267	27.198	26.807	27.38	-0.16933					18	10	2	0	0	0	0.10244	1	9892	9892		57.722	19.748	1	4009000			29479	7632	18665	18761	28364	28364					-0.04069906144900415
SEEQSRLAA	9	Unmodified	_SEEQSRLAA_					0	0	0		TBP|p.A224V|1|0.25|ENSG00000112592|chr6:170567003-170567003|C/T|missense_variant;nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP;TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant;ENSG00000182521|ENST00000247219|TBPL2	TBP|p.A224V|1|0.25|ENSG00000112592|chr6:170567003-170567003|C/T|missense_variant	TBP|p.A224V|1|0.25|ENSG00000112592|chr6:170567003-170567003|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	495.1925964355469	2	495.74617	989.477788	0.22763	0.00011285	0.58717	0.00029109	0.8148	0.00040393	495.7465404717539	21.734	0.3638	21.349	21.167	21.531	-0.38503					9	6	2	0	0	0	0.15381	1	7642	7642		43.982	24.725	1	11880000			29480	2351	18666	18762	28365	28365					-0.01737198838520726
SEEQSRLAA	9	Unmodified	_SEEQSRLAA_					0	0	0		TBP|p.A224V|1|0.25|ENSG00000112592|chr6:170567003-170567003|C/T|missense_variant;nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP;TBPL2|p.K373*|1|0.38|ENSG00000182521|chr14:55414390-55414391|-/A|frameshift_variant;ENSG00000182521|ENST00000247219|TBPL2	TBP|p.A224V|1|0.25|ENSG00000112592|chr6:170567003-170567003|C/T|missense_variant	TBP|p.A224V|1|0.25|ENSG00000112592|chr6:170567003-170567003|C/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	495.74617	989.477788	0.1544	7.6543E-05	-0.061762	-3.0619E-05	0.092636	4.5924E-05	495.7460690708377	21.07	0.52323	21.105	20.923	21.446	0.034473	-0.093242	-6.7276E-05	NaN	43.982	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11247000			29481	2351	18666	18762							-0.01737198838520726
SEERKAGAY	9	Unmodified	_SEERKAGAY_					0	0	0		BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant;ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1;BAHCC1|p.H888Tfs*86|1|0.31|ENSG00000266074|chr17:81444812-81444812|C/-|frameshift_variant;BAHCC1|p.H888Pfs*186|1|0.24|ENSG00000266074|chr17:81444811-81444812|-/C|frameshift_variant;BAHCC1|p.G851Rfs*223|1|0.43|ENSG00000266074|chr17:81444699-81444700|-/C|frameshift_variant;BAHCC1|p.S1322Qfs*8|1|0.45|ENSG00000266074|chr17:81447736-81447737|-/C|frameshift_variant;BAHCC1|p.S1322Afs*42|1|0.44|ENSG00000266074|chr17:81447737-81447737|C/-|frameshift_variant;BAHCC1|p.R1605Afs*107|1|0.22|ENSG00000266074|chr17:81456436-81456436|C/-|frameshift_variant	BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant	BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	505.748779296875	2	505.748713	1009.48287	0.40594	0.0002053	-0.49668	-0.0002512	-0.090747	-4.5895E-05	505.7485745736542	20.483	0.2137	20.103	19.969	20.183	-0.37949					6	3	2	0	0	0	0.53593	1	7190	7190		14.838	2.3067	1	13853000			29482	250	18667	18763	28366	28366					-0.02148894975903204
SEERKAGAY	9	Unmodified	_SEERKAGAY_					0	0	0		BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant;ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1;BAHCC1|p.H888Tfs*86|1|0.31|ENSG00000266074|chr17:81444812-81444812|C/-|frameshift_variant;BAHCC1|p.H888Pfs*186|1|0.24|ENSG00000266074|chr17:81444811-81444812|-/C|frameshift_variant;BAHCC1|p.G851Rfs*223|1|0.43|ENSG00000266074|chr17:81444699-81444700|-/C|frameshift_variant;BAHCC1|p.S1322Qfs*8|1|0.45|ENSG00000266074|chr17:81447736-81447737|-/C|frameshift_variant;BAHCC1|p.S1322Afs*42|1|0.44|ENSG00000266074|chr17:81447737-81447737|C/-|frameshift_variant;BAHCC1|p.R1605Afs*107|1|0.22|ENSG00000266074|chr17:81456436-81456436|C/-|frameshift_variant	BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant	BAHCC1|p.P2034Lfs*15|1|0.65|ENSG00000266074|chr17:81460375-81460375|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	505.748713	1009.48287	0.34023	0.00017207	-0.31722	-0.00016044	0.023009	1.1637E-05	505.7485819742743	19.847	0.15693	19.847	19.756	19.913	0	-0.12819	0.000158	NaN	14.838	8	2	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4086000			29483	250	18667	18763							-0.02148894975903204
SEERLALEA	9	Unmodified	_SEERLALEA_					0	0	0		ENST00000483092.1_1_1:229463285-229478721:-|nuORF	ENST00000483092.1_1_1:229463285-229478721:-|nuORF	ENST00000483092.1_1_1:229463285-229478721:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	509.26416015625	2	509.264196	1016.51384	0.34292	0.00017464	-0.27504	-0.00014007	0.067886	3.4572E-05	509.26391255670234	19.7	0.15655	19.324	19.246	19.403	-0.37503					4	2	2	0	0	0	0.37539	1	6874	6874		24.021	3.5669	1	7432500			29484	8269	18668	18764	28367	28367					0.006242583383254896
SEESMEEAGL	10	Unmodified	_SEESMEEAGL_					0	0	0		nc|ENSG00000162419|Q9Y692|GMEB1;ENSG00000162419|ENST00000373816|GMEB1;GMEB1|p.E282Gfs*96|1|0.06|ENSG00000162419|chr1:28704275-28704276|-/GTAAAAA|frameshift_variant	nc|ENSG00000162419|Q9Y692|GMEB1	nc|ENSG00000162419|Q9Y692|GMEB1	MULTI-SECPEP	HCT116MG_D190212_S1	1	540.7196044921875	2	541.221336	1080.42812	0.5145	0.00027846	0.31377	0.00016982	0.82827	0.00044828	541.2214919969775	19.992	0.26137	19.992	19.861	20.123	0					6	4	2	0	0	0	0.29442	1	6973	6973		10.074	3.3508	1	3345700			29485	4518	18669	18765	28368	28368					-0.1088769462946857
SEETCQRLVA	10	Unmodified	_SEETCQRLVA_					0	0	0		ENST00000379061.8_1_17:26708312-26722930:+|nuORF;nc|ENSG00000004139|Q6SZW1-2|SARM1;ENSG00000004139|ENST00000585482|SARM1	ENST00000379061.8_1_17:26708312-26722930:+|nuORF	ENST00000379061.8_1_17:26708312-26722930:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	568.2744140625	2	568.274238	1134.53392	0.39757	0.00022593	0.032884	1.8687E-05	0.43046	0.00024462	568.2741770843278	19.231	0.26037	18.862	18.68	18.94	-0.3695					6	4	2	0	0	0	0.64492	1	6663	6663		24.991	3.454	1	6928800			29486	798	18670	18766	28369	28369					-0.02796313993349031
SEETCYPP	8	Unmodified	_SEETCYPP_					0	0	0			REV__ENSG00000189306|ENST00000323013|RRP7A	REV__ENSG00000189306|ENST00000323013|RRP7A	MSMS	HCT116MG_D190212_S3	3	463.1824035644531	2	463.184026	924.353498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.714	1	28.508	28.008	29.008	-0.20593								0	0	0	0.8837	1	10403	10403		10.183	0	1		+		29487	13996	18671	18767	28370	28370					-0.11170412650210437
SEETPAISP	9	Unmodified	_SEETPAISP_					0	0	0		nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	HCT116MG_D190212_S4	4	930.44189453125	1	930.441468	929.434192	0.61897	0.00057591	0.058988	5.4885E-05	0.67796	0.0006308	930.4412773568349	32.095	0.46712	31.72	31.434	31.901	-0.37529					14	8	2	0	0	0	0.0047811	1	11630	11630		139.54	61.56	1	4001500			29488	9455	18672	18768	28371	28371					-0.0333480833566
SEETPLTAA	9	Unmodified	_SEETPLTAA_					0	0	0		ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	MULTI-MSMS	HCT116MG_D190212_S3	3	918.443359375	1	918.441468	917.434192	0.77574	0.00071248	0.20234	0.00018584	0.97809	0.00089832	918.4417465724515	33.672	0.51884	33.382	33.148	33.667	-0.29013					14	9	2	0	0	0	0.020181	1	12377	12377		96.285	47.939	1	5546200			29489	5658	18673	18769	28372	28372					-0.027828083356666866
SEETPLTAA	9	Unmodified	_SEETPLTAA_					0	0	0		ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	MULTI-MSMS	HCT116MG_D190212_S4	4	918.4423217773438	1	918.441468	917.434192	0.94994	0.00087247	-0.48969	-0.00044975	0.46026	0.00042272	918.4409734091736	33.721	0.34854	33.337	33.169	33.517	-0.38426					10	6	2	0	0	0	0.020181	1	12288	12288		96.285	47.939	1	4043400			29490	5658	18673	18769	28373	28373					-0.027828083356666866
SEEVRRFRQQF	11	Unmodified	_SEEVRRFRQQF_					0	0	0		ENSG00000256812|ENST00000457326|CAPNS2	ENSG00000256812|ENST00000457326|CAPNS2	ENSG00000256812|ENST00000457326|CAPNS2	MULTI-MSMS	HCT116MG_D190212_S2	2	495.7462463378906	3	494.59178	1480.75351	0.24164	0.00011951	-0.71928	-0.00035575	-0.47764	-0.00023624	494.59108526799673	21.487	0.20808	21.104	20.961	21.169	-0.38341					8	3	3	0	0	0	0.74191	1	7529	7529		1.2148	0.10508	1	14319000			29491	6612	18674	18770	28374	28374					0.03236253009367829
SEEVSAVRN	9	Unmodified	_SEEVSAVRN_					0	0	0			REV__tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1	REV__tr|U7SMI0|U7SMI0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01847PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	495.7461853027344	2	495.74617	989.477788	0.15806	7.8355E-05	0.7977	0.00039546	0.95575	0.00047381	495.74645683224605	20.706	0.20819	20.74	20.61	20.818	0.034473					6	3	2	0	0	0	0.41514	1	7193	7193		21.747	2.4897	1	5588100	+		29492	17725	18675	18771	28375	28375					-0.01737198838520726
SEEYPNKPP	9	Unmodified	_SEEYPNKPP_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	HCT116MG_D190212_S2	2	530.7504272460938	2	530.750921	1059.48729	0.37752	0.00020037	-0.10415	-5.5277E-05	0.27337	0.00014509	530.7506898164136	23.402	0.36297	23.017	22.778	23.141	-0.3852					11	6	3	0	0	0	0.027442	1	8362	8362		88.954	52.827	1	14469000			29493	2625	18676	18772	28376	28376					-0.040074305529969934
SEEYPNKPP	9	Unmodified	_SEEYPNKPP_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	HCT116MG_D190212_S3	3	530.74951171875	2	530.750921	1059.48729	0.39007	0.00020703	-0.37801	-0.00020063	0.012067	6.4045E-06	530.750636225096	22.992	0.56046	22.973	22.595	23.156	-0.018869					15	10	2	0	0	0	0.41514	2	7948	7948;7971		21.747	4.6338	1	14927000			29494	2625	18676	18772	28377;28378	28377					-0.040074305529969934
SEEYPNKPP	9	Unmodified	_SEEYPNKPP_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	HCT116MG_D190212_S4	4	531.2529296875	2	530.750921	1059.48729	0.25706	0.00013643	0.27928	0.00014823	0.53634	0.00028466	530.7508173233714	23.249	0.42003	23.001	22.748	23.168	-0.24775					13	7	3	0	0	0	0.035349	1	8140	8140		81.89	35.869	1	8550600			29495	2625	18676	18772	28379	28379					-0.040074305529969934
SEFAVNGIVHD	11	Unmodified	_SEFAVNGIVHD_					0	0	0		nc|nan|Q2M2W7-2|C17orf58;ENSG00000186665|ENST00000580729|C17orf58	nc|nan|Q2M2W7-2|C17orf58	nc|nan|Q2M2W7-2|C17orf58	MULTI-MSMS	HCT116MG_D190212_S4	4	594.2877807617188	2	594.288202	1186.56185	0.764	0.00045403	-0.20902	-0.00012422	0.55498	0.00032982	594.2880192825822	38.58	1.0055	38.198	37.634	38.64	-0.38163					59	21	4	0	0	0	0.73536	1	13955	13955		8.7454	1.1365	1	39463000			29496	5903	18677	18773	28380	28380					-0.023966677416183302
SEFAVNGIVHD	11	Unmodified	_SEFAVNGIVHD_					0	0	0		nc|nan|Q2M2W7-2|C17orf58;ENSG00000186665|ENST00000580729|C17orf58	nc|nan|Q2M2W7-2|C17orf58	nc|nan|Q2M2W7-2|C17orf58	MULTI-MSMS	HCT116MG_D190212_S4	4	1188.5743408203125	1	1187.56913	1186.56185	0.29518	0.00035054	0.099259	0.00011788	0.39443	0.00046842	1187.5687647874197	38.639	0.7278	38.258	37.761	38.489	-0.38163					25	14	2	0	0	0	0.70662	1	14069	14069		19.362	3.2128	1	5972600			29497	5903	18677	18773	28381	28381					-0.023966677416183302
SEFDRQAEI	9	Unmodified	_SEFDRQAEI_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-SECPEP	HCT116MG_D190212_S2	2	364.843017578125	3	365.508611	1093.504	-0.11041	-4.0358E-05	0.22576	8.2518E-05	0.11535	4.216E-05	365.50886535344074	26.331	0.25837	25.969	25.766	26.024	-0.36164					7	4	2	0	0	0	0.26046	1	9528	9528		4.5289	2.4429	1	4292400			29498	1627	18678	18774	28382	28382					-0.03900929667042874
SEFDVRAF	8	Unmodified	_SEFDVRAF_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000464816.1_1_3:112729450-112730081:-|nuORF;ENST00000472762.5_1_3:112728377-112730081:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	485.73480224609375	2	485.735074	969.455596	0.17678	8.5869E-05	0.50897	0.00024722	0.68575	0.00033309	485.73496230469726	46.382	0.25843	46.27	46.11	46.369	-0.11122					9	4	3	0	0	0	0.53366	1	17692	17692		38.176	12.776	1	11937000			29499	4612	18679	18775	28383	28383					-0.030353785162787972
SEFDVRAF	8	Unmodified	_SEFDVRAF_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000464816.1_1_3:112729450-112730081:-|nuORF;ENST00000472762.5_1_3:112728377-112730081:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	485.73504638671875	2	485.735074	969.455596	0.34022	0.00016526	-0.06201	-3.012E-05	0.27821	0.00013514	485.735062790054	46.646	0.26057	46.332	46.177	46.437	-0.31405					7	4	2	0	0	0	0.72197	1	17522	17522		20.454	2.3186	1	2368400			29500	4612	18679	18775	28384	28384					-0.030353785162787972
SEFESKVSA	9	Unmodified	_SEFESKVSA_					0	0	0		ENST00000608804.1_1_1:172525038-172539871:+|nuORF;ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENST00000608804.1_1_1:172525038-172539871:+|nuORF	ENST00000608804.1_1_1:172525038-172539871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	492.2379150390625	2	492.237647	982.460741	0.17831	8.7772E-05	-0.10597	-5.2161E-05	0.072345	3.5611E-05	492.23762839509885	26.99	0.25974	26.679	26.535	26.794	-0.3114					7	4	2	0	0	0	0.094138	1	9660	9660		59.368	7.7386	1	4010600			29501	1600	18680	18776	28385	28385					-0.031191194443181303
SEFFQRSTK	9	Unmodified	_SEFFQRSTK_					0	0	0			REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	565.2859497070312	2	565.285463	1128.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.869	1	27.869	27.369	28.369	0								0	0	0	0.082341	1	10131	10131		75.761	35.811	1		+		29502	12909	18681	18777	28386	28386					-0.002763465334282955
SEFGNHYLY	9	Unmodified	_SEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	HCT116MG_D190212_S1	1	565.2516479492188	2	565.251089	1128.48762	0.55384	0.00031306	-0.08684	-4.9087E-05	0.467	0.00026397	565.2511580783438	41.835	0.20822	41.835	41.706	41.914	0					6	3	2	0	0	0	0.069315	1	15792	15792		65.235	34.598	1	9219400			29503	6018	18682	18778	28387	28387					-0.07148010833134322
SEFGNHYLY	9	Unmodified	_SEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	HCT116MG_D190212_S2	2	565.2510986328125	2	565.251089	1128.48762	0.56103	0.00031712	0.1232	6.9638E-05	0.68423	0.00038676	565.2509565731722	41.799	0.46639	41.731	41.498	41.964	-0.068199					17	8	3	0	0	0	0.0044301	1	15789	15789		144.35	98.329	1	77914000			29504	6018	18682	18778	28388	28388					-0.07148010833134322
SEFGNHYLY	9	Unmodified	_SEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	HCT116MG_D190212_S3	3	565.7959594726562	2	565.251089	1128.48762	0.42003	0.00023742	0.20613	0.00011652	0.62617	0.00035394	565.2510549205724	42.109	0.36374	41.807	41.625	41.988	-0.30257					15	6	3	0	0	0	0.010834	2	15690	15681;15690		111.29	69.447	1	15094000			29505	6018	18682	18778	28389;28390	28390					-0.07148010833134322
SEFGNHYLY	9	Unmodified	_SEFGNHYLY_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	HCT116MG_D190212_S4	4	565.2512817382812	2	565.251089	1128.48762	0.37058	0.00020947	-0.096259	-5.4411E-05	0.27432	0.00015506	565.2509389293186	42.188	0.25888	41.813	41.684	41.942	-0.37565					7	4	2	0	0	0	0.26536	1	15508	15508		34.402	19.563	1	2370700			29506	6018	18682	18778	28391	28391					-0.07148010833134322
SEFGSPGLLTY	11	Unmodified	_SEFGSPGLLTY_					0	0	0		ENST00000597681.1_1_19:17830311-17838159:+|nuORF;ENST00000601544.5_1_19:17830311-17836711:+|nuORF;MAP1S|p.P198Rfs*93|3|0.24|ENSG00000130479|chr19:17725972-17725972|C/-|frameshift_variant;MAP1S|p.S595Vfs*62|1|0.12|ENSG00000130479|chr19:17727160-17727160|C/-|frameshift_variant;MAP1S|p.R854Gfs*156|1|0.43|ENSG00000130479|chr19:17727944-17727944|C/-|frameshift_variant;ENSG00000130479|ENST00000324096|MAP1S	ENST00000597681.1_1_19:17830311-17838159:+|nuORF	ENST00000597681.1_1_19:17830311-17838159:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1170.56982421875	1	1170.56773	1169.56045	0.45335	0.00053067	0.29249	0.00034238	0.74584	0.00087305	1170.5686553013975	54.16	0.2574	53.971	53.842	54.099	-0.1894					8	4	2	0	0	0	0.015243	1	20879	20879		134.3	86.547	1	17291000			29507	3082	18683	18779	28392	28392					-0.01754301830374061
SEFGTFYHG	9	Unmodified	_SEFGTFYHG_					0	0	0		ENST00000440859.7_1_7:107400769-107400898:+|nuORF	ENST00000440859.7_1_7:107400769-107400898:+|nuORF	ENST00000440859.7_1_7:107400769-107400898:+|nuORF	MSMS	HCT116MG_D190212_S4	4	522.7249755859375	2	522.724707	1043.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.689	1	27.368	26.868	27.868	-0.32157								0	0	0	0.768	1	9924	9924		7.9102	1.187	1				29508	7923	18684	18780	28393	28393					-0.08511968895959399
SEFLCCQGS	9	Unmodified	_SEFLCCQGS_					0	0	0		POLR3A|p.D963G|1|0.32|ENSG00000148606|chr10:77991067-77991067|T/C|missense_variant	POLR3A|p.D963G|1|0.32|ENSG00000148606|chr10:77991067-77991067|T/C|missense_variant	POLR3A|p.D963G|1|0.32|ENSG00000148606|chr10:77991067-77991067|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	487.1913757324219	2	487.191328	972.368103	0.25721	0.00012531	-0.16872	-8.22E-05	0.08849	4.3112E-05	487.19118814890743	25.596	0.26007	25.468	25.338	25.598	-0.12795					7	4	2	0	0	0	0.26536	1	9155	9155		34.402	0.29928	1	5390000			29509	9761	18685	18781	28394	28394					-0.1191866377370161
SEFLCCQGS	9	Unmodified	_SEFLCCQGS_					0	0	0		POLR3A|p.D963G|1|0.32|ENSG00000148606|chr10:77991067-77991067|T/C|missense_variant	POLR3A|p.D963G|1|0.32|ENSG00000148606|chr10:77991067-77991067|T/C|missense_variant	POLR3A|p.D963G|1|0.32|ENSG00000148606|chr10:77991067-77991067|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	487.191328	972.368103	0.25721	0.00012531	-0.16872	-8.22E-05	0.08849	4.3112E-05	487.19118814890743	25.596	0.26007	25.468	25.338	25.598	-0.12795	-0.036833	-7.9881E-05	NaN	34.402	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5390000			29510	9761	18685	18781							-0.1191866377370161
SEFLCCQGS	9	Unmodified	_SEFLCCQGS_					0	0	0		POLR3A|p.D963G|1|0.32|ENSG00000148606|chr10:77991067-77991067|T/C|missense_variant	POLR3A|p.D963G|1|0.32|ENSG00000148606|chr10:77991067-77991067|T/C|missense_variant	POLR3A|p.D963G|1|0.32|ENSG00000148606|chr10:77991067-77991067|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	487.191328	972.368103	-0.069317	-3.3771E-05	0.15889	7.7408E-05	0.08957	4.3638E-05	487.19132696314466	25.832	0.26023	25.542	25.412	25.672	-0.29022	0.036833	0.00023934	NaN	34.402	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3234400			29511	9761	18685	18781							-0.1191866377370161
SEFLPFHSFFF	11	Unmodified	_SEFLPFHSFFF_					0	0	0			REV__nc|ENSG00000217128|Q8TF40-2|FNIP1	REV__nc|ENSG00000217128|Q8TF40-2|FNIP1	MSMS	HCT116MG_D190212_S3	3	702.929443359375	2	702.834788	1403.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.811	1	44.501	44.001	45.001	-0.30927								0	0	0	0.93552	1	16760	16760		13.906	4.5229	1		+		29512	14287	18686	18782	28395	28395					-0.030657432884027003
SEFPGAQHY	9	Unmodified	_SEFPGAQHY_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;ENST00000566509.5_1_15:73052730-73067416:-|nuORF	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MSMS	HCT116MG_D190212_S2	2	518.2301635742188	2	518.230156	1034.44576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.019	1	31.789	31.289	32.289	-0.23009								0	0	0	0.42657	1	11833	11833		32.305	10.559	1				29513	4409	18687	18783	28396	28396					-0.07008566521653847
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	HCT116MG_D190212_S2	2	481.7690734863281	2	481.768917	961.523281	0.17483	8.4229E-05	0.18237	8.786E-05	0.3572	0.00017209	481.7689412414039	46.144	0.41155	46.043	45.812	46.223	-0.1014					15	7	3	0	0	0	0.094232	1	17560	17560		96.367	14.476	1	72262000			29514	469	18688	18784	28397	28397					0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	481.768917	961.523281	0.31679	0.00015262	-0.29588	-0.00014254	0.020907	1.0073E-05	481.76913424296555	46.105	0.20758	46.105	45.975	46.182	0	0.026671	-0.00039413	NaN	96.367	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24000000			29515	469	18688	18784							0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	481.768917	961.523281	0.46996	0.00022641	-0.052259	-2.5177E-05	0.4177	0.00020123	481.7687767398579	46.399	0.2004	46.086	45.978	46.179	-0.31237	0.0083266	-0.0001594	NaN	96.367	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6527300			29516	469	18688	18784							0.04098071414523474
SEFPLLRT	8	Unmodified	_SEFPLLRT_					0	0	0			REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant	REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	481.7693176269531	2	481.768917	961.523281	0.31679	0.00015262	-0.29588	-0.00014254	0.020907	1.0073E-05	481.76913424296555	46.105	0.20758	46.105	45.975	46.182	0					6	3	2	0	0	0	0.46892	1	17510	17510		43.858	2.0187	1	24000000	+		29517	17645	18689	18785	28398	28398					0.04098071414523474
SEFPLLRT	8	Unmodified	_SEFPLLRT_					0	0	0			REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant	REV__TMEM164|p.L174S|1|0.24|ENSG00000157600|chrX:110144811-110144811|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	481.7691955566406	2	481.768917	961.523281	0.46996	0.00022641	-0.052259	-2.5177E-05	0.4177	0.00020123	481.7687767398579	46.399	0.2004	46.086	45.978	46.179	-0.31237					6	3	2	0	0	0	0.33298	1	17411	17411		56.177	2.3442	1	6527300	+		29518	17645	18689	18785	28399	28399					0.04098071414523474
SEFQERHEVAK	11	Unmodified	_SEFQERHEVAK_					0	0	0		ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	ENST00000538021.5_2_11:72004413-72018253:-|nuORF	ENST00000538021.5_2_11:72004413-72018253:-|nuORF	MSMS	HCT116MG_D190212_S2	2	680.3610229492188	2	680.336215	1358.65788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.04	1	25.671	25.171	26.171	-0.36914								0	0	0	0.94012	1	9404	9404		11.495	2.1116	1				29519	4509	18690	18786	28400	28400					-0.007105199015313701
SEFRTYSF	8	Unmodified	_SEFRTYSF_					0	0	0		ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;ENST00000515514.1_1_1:205498480-205499773:+|nuORF;ENST00000512008.5_1_1:205498480-205499388:+|nuORF;ENST00000468954.1_1_1:205497195-205498558:+|nuORF;ENST00000504162.1_1_1:205498135-205498558:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF	ENST00000504648.5_1_1:205492597-205500503:+|nuORF	ENST00000504648.5_1_1:205492597-205500503:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	518.740966796875	2	518.740357	1035.46616	0.59947	0.00031097	0.045678	2.3695E-05	0.64515	0.00033467	518.7403031954868	42.695	0.25971	42.625	42.481	42.741	-0.069981					10	4	3	0	0	0	0.1105	1	16192	16192		92.653	31.296	1	16403000			29520	2566	18691	18787	28401	28401					-0.05015395861846628
SEFSFFLPP	9	Unmodified	_SEFSFFLPP_					0	0	0		ENST00000377104.3_1_13:80914870-80914939:-|nuORF	ENST00000377104.3_1_13:80914870-80914939:-|nuORF	ENST00000377104.3_1_13:80914870-80914939:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.1652221679688	2	535.7633	1069.51205	0.26361	0.00014123	-0.019114	-1.0241E-05	0.2445	0.00013099	535.7632537495982	30.609	0.25751	30.33	30.238	30.496	-0.2793					6	4	2	0	0	0	0.25445	1	11294	11294		13.508	6.2187	1	8230100			29521	7522	18692	18788	28402	28402					-0.019927506796193484
SEFTGVWKY	9	Unmodified	_SEFTGVWKY_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	558.7717895507812	2	558.771657	1115.52876	0.27455	0.00015341	-0.16545	-9.2448E-05	0.1091	6.0961E-05	558.7714053552257	47.918	0.30622	47.918	47.742	48.048	0					14	5	4	0	0	0	0.0035381	1	18222	18222		171.09	105.85	1	102800000			29522	8450	18693	18789	28403	28403					-0.024382497936585423
SEFTGVWKY	9	Unmodified	_SEFTGVWKY_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	558.77197265625	2	558.771657	1115.52876	0.66965	0.00037418	-0.011386	-6.3622E-06	0.65826	0.00036782	558.771323968516	47.999	0.45999	47.867	47.584	48.044	-0.13281					18	8	3	0	0	0	0.0080847	1	18306	18306		118.07	81.941	1	460040000			29523	8450	18693	18789	28404	28404					-0.024382497936585423
SEFTGVWKY	9	Unmodified	_SEFTGVWKY_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	558.7719116210938	2	558.771657	1115.52876	0.4357	0.00024346	0.28626	0.00015996	0.72196	0.00040341	558.7717430747547	48.221	0.41715	47.905	47.723	48.14	-0.31596					20	7	4	0	0	0	0.0035381	1	18132	18132		171.09	105.85	1	73231000			29524	8450	18693	18789	28405	28405					-0.024382497936585423
SEFTGVWKY	9	Unmodified	_SEFTGVWKY_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	558.7724609375	2	558.771657	1115.52876	0.21598	0.00012068	0.38886	0.00021728	0.60484	0.00033797	558.7718908290768	48.277	0.35692	47.909	47.728	48.085	-0.36728					12	6	3	0	0	0	0.0035183	1	17881	17881		157.8	101.62	1	22404000			29525	8450	18693	18789	28406	28406					-0.024382497936585423
SEFTQYTTH	9	Unmodified	_SEFTQYTTH_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MULTI-MSMS	HCT116MG_D190212_S2	2	557.2459106445312	2	557.246003	1112.47745	0.02912	1.6227E-05	0.3114	0.00017353	0.34052	0.00018975	557.2459946009626	30.054	0.2064	29.769	29.667	29.873	-0.28453					8	3	3	0	0	0	0.010834	1	11048	11048		111.29	73.111	1	22463000			29526	3559	18694	18790	28407	28407					-0.07428618558401467
SEFTQYTTH	9	Unmodified	_SEFTQYTTH_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MSMS	HCT116MG_D190212_S3	3	557.2462768554688	2	557.246003	1112.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.27	1	30.02	29.52	30.52	-0.24946								0	0	0	0.49326	1	11026	11026		29.082	15.176	1				29527	3559	18694	18790	28408	28408					-0.07428618558401467
SEFWIRLRK	9	Unmodified	_SEFWIRLRK_					0	0	0		TDRD6|p.N917Ifs*2|1|0.35|ENSG00000180113|chr6:46690872-46690872|A/-|frameshift_variant;TDRD6|p.L1636Qfs*6|1|0.06|ENSG00000180113|chr6:46693034-46693035|-/AAAG|frameshift_variant;nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	TDRD6|p.N917Ifs*2|1|0.35|ENSG00000180113|chr6:46690872-46690872|A/-|frameshift_variant	TDRD6|p.N917Ifs*2|1|0.35|ENSG00000180113|chr6:46690872-46690872|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	617.8562622070312	2	617.85639	1233.69823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.244	1	16.08	15.58	16.58	-0.16364								0	0	0	0.77008	1	5302	5302		0.6015	0	1				29528	5585	18695	18791	28409	28409					0.09072491279516726
SEGEHFLPPP	10	Unmodified	_SEGEHFLPPP_					0	0	0			REV__PWWP2A|p.A270Efs*45|1|0.04|ENSG00000170234|chr5:160093841-160093842|-/TAGTGCAACTGACT|frameshift_variant	REV__PWWP2A|p.A270Efs*45|1|0.04|ENSG00000170234|chr5:160093841-160093842|-/TAGTGCAACTGACT|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	555.2669067382812	2	555.266739	1108.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.022	1	42.717	42.217	43.217	-0.30472								0	0	0	0.89194	1	16045	16045		16.942	0	1		+		29529	17458	18696	18792	28410	28410					-0.030994377990509747
SEGFTWSDGSP	11	Unmodified	_SEGFTWSDGSP_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	MSMS	HCT116MG_D190212_S4	4	585.2386474609375	2	585.240918	1168.46728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.853	1	18.672	18.172	19.172	-0.18052								0	0	0	0.94416	1	6356	6356		9.3831	0.78985	1				29530	6624	18697	18793	28411	28411					-0.11021226283605756
SEGGANVF	8	Unmodified	_SEGGANVF_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	780.352294921875	1	780.352259	779.344983	0.86977	0.00067873	0.20499	0.00015996	1.0748	0.00083869	780.3523670524557	37.052	0.36083	36.937	36.808	37.168	-0.11478					10	6	2	0	0	0	0.17804	1	13889	13889		77.984	35.89	1	33617000			29531	2490	18698	18794	28412	28412					-0.05351598504523736
SEGGANVF	8	Unmodified	_SEGGANVF_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	780.3529663085938	1	780.352259	779.344983	0.69778	0.00054451	0.21533	0.00016803	0.91311	0.00071254	780.3517460351947	37.2	0.41631	36.899	36.717	37.133	-0.30137					12	7	2	0	0	0	0.23195	1	13785	13785		67.344	33.241	1	12843000			29532	2490	18698	18794	28413	28413					-0.05351598504523736
SEGGKTPVA	9	Unmodified	_SEGGKTPVA_					0	0	0		nc|ENSG00000166130|Q70UQ0|IKBIP;nc|ENSG00000166130|Q70UQ0-3|IKBIP;ENSG00000166130|ENST00000299157|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	MULTI-MSMS	HCT116MG_D190212_S1	1	423.2219543457031	2	423.2218	844.429047	0.16237	6.8719E-05	-0.19747	-8.3572E-05	-0.035094	-1.4852E-05	423.2216813079047	17.802	0.31259	17.802	17.568	17.88	0					8	5	2	0	0	0	0.094138	1	6069	6069		59.368	13.347	1	4130800			29533	9533	18699	18795	28414	28414					0.0006093259237331949
SEGGKTPVA	9	Unmodified	_SEGGKTPVA_					0	0	0		nc|ENSG00000166130|Q70UQ0|IKBIP;nc|ENSG00000166130|Q70UQ0-3|IKBIP;ENSG00000166130|ENST00000299157|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	MULTI-MSMS	HCT116MG_D190212_S2	2	423.2217102050781	2	423.2218	844.429047	-0.12015	-5.0849E-05	0.42	0.00017775	0.29985	0.0001269	423.2218496483941	18.241	0.47008	17.884	17.65	18.12	-0.35647					19	8	3	0	0	0	0.040027	1	6242	6242		79.596	33.575	1	49576000			29534	9533	18699	18795	28415	28415					0.0006093259237331949
SEGGKTPVA	9	Unmodified	_SEGGKTPVA_					0	0	0		nc|ENSG00000166130|Q70UQ0|IKBIP;nc|ENSG00000166130|Q70UQ0-3|IKBIP;ENSG00000166130|ENST00000299157|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	MULTI-MSMS	HCT116MG_D190212_S2	2	845.43701171875	1	845.436323	844.429047	0.52513	0.00044397	0.16795	0.00014199	0.69308	0.00058596	845.4365408394843	18.241	0.47007	17.884	17.597	18.067	-0.35647					15	8	3	0	0	0	0.0096585	1	6262	6262		114.19	56.464	1	16698000			29535	9533	18699	18795	28416	28416					0.0006093259237331949
SEGGKTPVA	9	Unmodified	_SEGGKTPVA_					0	0	0		nc|ENSG00000166130|Q70UQ0|IKBIP;nc|ENSG00000166130|Q70UQ0-3|IKBIP;ENSG00000166130|ENST00000299157|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	nc|ENSG00000166130|Q70UQ0|IKBIP	MULTI-MSMS	HCT116MG_D190212_S3	3	423.22174072265625	2	423.2218	844.429047	-0.15135	-6.4053E-05	0.23178	9.8093E-05	0.08043	3.404E-05	423.22180010086254	17.27	0.46811	17.354	17.12	17.589	0.084467					14	8	3	0	0	0	0.032914	1	5774	5774		83.429	28.655	1	9102100			29536	9533	18699	18795	28417	28417					0.0006093259237331949
SEGGSSFVTA	10	Unmodified	_SEGGSSFVTA_					0	0	0		nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ZFYVE16|p.T1329Hfs*11|2|0.35|ENSG00000039319|chr5:80459451-80459451|A/-|frameshift_variant;ENSG00000039319|ENST00000505560|ZFYVE16	nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	MULTI-MSMS	HCT116MG_D190212_S2	2	941.421142578125	1	941.421067	940.413791	0.98337	0.00092577	-0.74627	-0.00070256	0.2371	0.00022321	941.4203792464602	33.383	0.25578	33.19	33.071	33.327	-0.19297					6	4	2	0	0	0	0.042873	1	12418	12418		92.491	48.633	1	16768000			29537	998	18700	18796	28418	28418					-0.05879978995460533
SEGGSSFVTA	10	Unmodified	_SEGGSSFVTA_					0	0	0		nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ZFYVE16|p.T1329Hfs*11|2|0.35|ENSG00000039319|chr5:80459451-80459451|A/-|frameshift_variant;ENSG00000039319|ENST00000505560|ZFYVE16	nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	MULTI-MSMS	HCT116MG_D190212_S3	3	941.4219970703125	1	941.421067	940.413791	0.60902	0.00057335	-0.050297	-4.7351E-05	0.55873	0.000526	941.4207296850126	33.568	0.31145	33.278	33.096	33.408	-0.29013					7	5	2	0	0	0	0.060393	1	12334	12334		81.89	34.142	1	5271000			29538	998	18700	18796	28419	28419					-0.05879978995460533
SEGHRRGY	8	Unmodified	_SEGHRRGY_					0	0	0		ENST00000268933.7_1_17:48610272-48613815:+|nuORF	ENST00000268933.7_1_17:48610272-48613815:+|nuORF	ENST00000268933.7_1_17:48610272-48613815:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	482.240966796875	2	481.233565	960.452576	0.059255	2.8515E-05	1.8136	0.00087277	1.8729	0.00090129	481.2328909111819	10.423	0.6511	10.153	9.9231	10.574	-0.27021					60	30	3	0	0	0	0.8506	1	3284	3284		5.2307	0	1	596210			29539	6914	18701	18797	28420	28420					-0.02923208850438641
SEGKAYSL	8	Unmodified	_SEGKAYSL_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1;RCC1|p.R320W|1|0.47|ENSG00000180198|chr1:28536767-28536767|C/T|missense_variant	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MULTI-MSMS	HCT116MG_D190212_S2	2	427.7161865234375	2	427.71635	853.418148	0.23558	0.00010076	-0.04408	-1.8854E-05	0.1915	8.191E-05	427.71628177568823	29.708	0.25837	29.407	29.289	29.547	-0.30096					7	4	2	0	0	0	0.4699	1	10929	10929		43.772	13.136	1	13081000			29540	5588	18702	18798	28421	28421					-0.014424697819208632
SEGKAYSL	8	Unmodified	_SEGKAYSL_					0	0	0		ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1;RCC1|p.R320W|1|0.47|ENSG00000180198|chr1:28536767-28536767|C/T|missense_variant	ENSG00000180198|ENST00000683442|RCC1	ENSG00000180198|ENST00000683442|RCC1	MSMS	HCT116MG_D190212_S3	3	427.7166748046875	2	427.71635	853.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.754	1	29.517	29.017	30.017	-0.23655								0	0	0	0.34856	1	10822	10822		51.63	15.503	1				29541	5588	18702	18798	28422	28422					-0.014424697819208632
SEGLSVVF	8	Unmodified	_SEGLSVVF_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2;MAGEB2|p.G165A|1|0.32|ENSG00000099399|chrX:30219074-30219074|G/C|missense_variant	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S1	1	837.435546875	1	837.435261	836.427984	0.88937	0.00074479	-0.33934	-0.00028417	0.55003	0.00046062	837.4349007068814	55.172	0.20322	55.172	55.044	55.247	0					5	3	2	0	0	0	0.19622	1	21192	21192		74.396	14.601	1	46379000			29542	1637	18703	18799	28423	28423					0.0032271822348093337
SEGLSVVF	8	Unmodified	_SEGLSVVF_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2;MAGEB2|p.G165A|1|0.32|ENSG00000099399|chrX:30219074-30219074|G/C|missense_variant	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S2	2	837.4359130859375	1	837.435261	836.427984	0.77746	0.00065107	-0.060675	-5.0811E-05	0.71678	0.00060026	837.4350633699237	55.334	0.35855	55.146	55.019	55.377	-0.18797					16	6	4	0	0	0	0.083541	1	21333	21333		98.807	27.943	1	309220000			29543	1637	18703	18799	28424	28424					0.0032271822348093337
SEGLSVVF	8	Unmodified	_SEGLSVVF_					0	0	0		ENSG00000099399|ENST00000378988|MAGEB2;MAGEB2|p.G165A|1|0.32|ENSG00000099399|chrX:30219074-30219074|G/C|missense_variant	ENSG00000099399|ENST00000378988|MAGEB2	ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	HCT116MG_D190212_S3	3	837.4360961914062	1	837.435261	836.427984	0.77975	0.00065299	-0.47413	-0.00039705	0.30562	0.00025593	837.4344632763255	55.454	0.5302	55.162	54.77	55.3	-0.2918					16	9	3	0	0	0	0.083541	1	21040	21040		98.807	27.943	1	38188000			29544	1637	18703	18799	28425	28425					0.0032271822348093337
SEGNVATAA	9	Unmodified	_SEGNVATAA_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	HCT116MG_D190212_S2	2	819.3849487304688	1	819.384288	818.377011	0.78611	0.00064412	0.074903	6.1374E-05	0.86101	0.0007055	819.3843343433051	20.267	0.314	19.888	19.709	20.023	-0.37949					11	5	3	0	0	0	0.0051486	1	7084	7084		136.33	74.976	1	14609000			29545	5289	18704	18800	28426	28426					-0.03944230821389283
SEGNVATAA	9	Unmodified	_SEGNVATAA_					0	0	0		ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	HCT116MG_D190212_S3	3	819.385498046875	1	819.384288	818.377011	0.93319	0.00076464	0.19027	0.0001559	1.1235	0.00092054	819.3843463107135	19.821	0.26044	19.881	19.698	19.959	0.05983					7	4	2	0	0	0	0.0044301	1	6827	6827		144.35	66.201	1	5250500			29546	5289	18704	18800	28427	28427					-0.03944230821389283
SEGNVVNKP	9	Unmodified	_SEGNVVNKP_					0	0	0		GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant;GTPBP1|p.P617Hfs*9|1|0.36|ENSG00000100226|chr22:38729591-38729591|C/-|frameshift_variant;ENSG00000100226|ENST00000216044|GTPBP1	GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant	GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.2454833984375	2	472.245806	942.47706	0.15824	7.4729E-05	-0.0046635	-2.2023E-06	0.15358	7.2527E-05	472.245716981277	20.114	0.25944	19.739	19.558	19.817	-0.37503					8	4	2	0	0	0	0.012596	1	7019	7019		106.94	74.154	1	21726000			29547	1678	18705	18801	28428	28428					0.0035200651242348613
SEGNVVNKP	9	Unmodified	_SEGNVVNKP_					0	0	0		GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant;GTPBP1|p.P617Hfs*9|1|0.36|ENSG00000100226|chr22:38729591-38729591|C/-|frameshift_variant;ENSG00000100226|ENST00000216044|GTPBP1	GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant	GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	472.2460021972656	2	472.245806	942.47706	0.17698	8.3577E-05	-0.29262	-0.00013819	-0.11564	-5.4611E-05	472.2456901610557	19.35	0.36433	19.41	19.178	19.542	0.05983					17	6	4	0	0	0	0.030039	1	6619	6619		86.332	63.596	1	12645000			29548	1678	18705	18801	28429	28429					0.0035200651242348613
SEGNVVNKP	9	Unmodified	_SEGNVVNKP_					0	0	0		GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant;GTPBP1|p.P617Hfs*9|1|0.36|ENSG00000100226|chr22:38729591-38729591|C/-|frameshift_variant;ENSG00000100226|ENST00000216044|GTPBP1	GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant	GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	472.2456359863281	2	472.245806	942.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.661	1	19.467	18.967	19.967	-0.19367								0	0	0	0.16977	1	6682	6682		49.554	21.067	1				29549	1678	18705	18801	28430	28430					0.0035200651242348613
SEGNVVNKP	9	Unmodified	_SEGNVVNKP_					0	0	0		GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant;GTPBP1|p.P617Hfs*9|1|0.36|ENSG00000100226|chr22:38729591-38729591|C/-|frameshift_variant;ENSG00000100226|ENST00000216044|GTPBP1	GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant	GTPBP1|p.R386Afs*32|1|0.32|ENSG00000100226|chr22:38726083-38726083|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	472.245806	942.47706	0.1222	5.7706E-05	-0.22082	-0.00010428	-0.098625	-4.6575E-05	472.24561830364695	19.581	0.20857	19.581	19.443	19.652	0	0.0046315	-7.1885E-05	NaN	106.94	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2444600			29550	1678	18705	18801							0.0035200651242348613
SEGPGSPPP	9	Unmodified	_SEGPGSPPP_					0	0	0		nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-5|PTK7;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000493339.1_1_6:43111066-43112355:+|nuORF;ENST00000487673.5_1_6:43111066-43128616:+|nuORF	nc|ENSG00000112655|Q13308-4|PTK7	nc|ENSG00000112655|Q13308-4|PTK7	MULTI-MSMS	HCT116MG_D190212_S1	1	824.7393798828125	1	824.378474	823.371197	0.8976	0.00073996	-0.02475	-2.0403E-05	0.87285	0.00071956	824.3783931468458	20.182	0.99145	20.182	19.756	20.748	0					28	18	2	0	0	0	0.023611	1	7193	7193		92.822	7.4654	1	5190700			29551	9429	18706	18802	28431	28431					-0.04755329333045211
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S1	1	934.4533081054688	1	934.451639	933.444362	0.87402	0.00081673	0.45617	0.00042627	1.3302	0.001243	934.4521764667505	47.451	0.6361	47.451	47.01	47.646	0					20	12	2	0	0	0	0.0054498	1	17974	17974		133.7	59.279	1	42285000			29552	1937	18707	18803	28432	28432					-0.02502200610433647
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	934.4530029296875	1	934.451639	933.444362	0.98491	0.00092035	0.30525	0.00028524	1.2902	0.0012056	934.4517992145585	47.613	0.82729	47.481	46.963	47.79	-0.13281					40	15	3	0	0	0	0.012168	2	18039	18039;18286		108	47.607	1	147100000			29553	1937	18707	18803	28433;28434	28433					-0.02502200610433647
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	467.7294921875	2	467.729458	933.444362	0.46374	0.0002169	0.12419	5.8085E-05	0.58792	0.00027499	467.7294382553897	47.639	0.51694	47.506	47.067	47.584	-0.13281					13	9	2	0	0	0	0.023938	1	18171	18171		92.491	48.084	1	9738900			29554	1937	18707	18803	28435	28435					-0.02502200610433647
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S3	3	934.4552001953125	1	934.451639	933.444362	0.53624	0.00050109	0.53207	0.0004972	1.0683	0.00099829	934.4521785816407	47.828	0.8725	47.513	47.06	47.932	-0.31525					38	17	3	0	0	0	0.007119	1	17872	17872		120.45	65.677	1	25804000			29555	1937	18707	18803	28436	28436					-0.02502200610433647
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S3	3	467.7297058105469	2	467.729458	933.444362	0.038958	1.8222E-05	0.33577	0.00015705	0.37473	0.00017527	467.7295473880145	47.856	0.51243	47.541	47.211	47.724	-0.31525					11	9	2	0	0	0	0.14972	1	18015	18015		48.346	21.462	1	3695900			29556	1937	18707	18803	28437	28437					-0.02502200610433647
SEGPPLTSF	9	Unmodified	_SEGPPLTSF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S4	4	934.4528198242188	1	934.451639	933.444362	0.73704	0.00068873	0.3529	0.00032977	1.0899	0.0010185	934.4520186389447	47.847	0.48476	47.478	47.19	47.674	-0.36907					18	12	3	0	0	0	0.012168	1	17615	17615		108	61.976	1	7139200			29557	1937	18707	18803	28438	28438					-0.02502200610433647
SEGRTFEM	8	Unmodified	_SEGRTFEM_					0	0	0		ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	ENST00000481470.5_1_3:58118395-58154450:+|nuORF	ENST00000481470.5_1_3:58118395-58154450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	478.7104187011719	2	478.710742	955.406931	0.42258	0.00020229	-0.68143	-0.00032621	-0.25885	-0.00012391	478.7104638647937	34.686	0.25866	34.528	34.399	34.657	-0.15834					7	4	2	0	0	0	0.53366	1	12953	12953		38.176	4.0731	1	13412000			29558	3394	18708	18804	28439	28439					-0.07255615147687422
SEGRTFEM	8	Unmodified	_SEGRTFEM_					0	0	0		ENST00000481470.5_1_3:58118395-58154450:+|nuORF;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	ENST00000481470.5_1_3:58118395-58154450:+|nuORF	ENST00000481470.5_1_3:58118395-58154450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	478.7108154296875	2	478.710742	955.406931	0.090056	4.3111E-05	0.37747	0.0001807	0.46753	0.00022381	478.71078118702826	34.904	0.26027	34.607	34.44	34.7	-0.29707					7	4	2	0	0	0	0.51345	1	12897	12897		39.95	5.8473	1	4436000			29559	3394	18708	18804	28440	28440					-0.07255615147687422
SEGSGTATP	9	Unmodified	_SEGSGTATP_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	HCT116MG_D190212_S2	2	806.353515625	1	806.352653	805.345377	0.88197	0.00071118	0.13218	0.00010659	1.0141	0.00081776	806.3526183356221	17.562	0.26105	17.213	17.082	17.343	-0.34933					7	4	2	0	0	0	0.050578	1	6014	6014		74.423	23.568	1	4954600			29560	5834	18709	18805	28441	28441					-0.06508223575337979
SEGTNWQTSP	10	Unmodified	_SEGTNWQTSP_					0	0	0		nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	MSMS	HCT116MG_D190212_S1	1	553.7403564453125	2	553.741085	1105.46762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.135	1	22.135	21.635	22.635	0								0	0	0	0.92607	1	7822	7822		10.074	2.7847	1				29561	9522	18710	18806	28442	28442					-0.08089806563771162
SEGVRVNVV	9	Unmodified	_SEGVRVNVV_					0	0	0		nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-4|TAF6	nc|ENSG00000106290|P49848-4|TAF6	MULTI-MSMS	HCT116MG_D190212_S3	3	479.7695007324219	2	479.769448	957.524344	0.25993	0.0001247	0.60104	0.00028836	0.86096	0.00041306	479.769663541188	33.516	0.20749	33.226	33.096	33.304	-0.29013					6	3	2	0	0	0	0.011082	1	12321	12321		110.67	58.406	1	13246000			29562	2067	18711	18807	28443	28443					0.04388285783431911
SEGVRVNVV	9	Unmodified	_SEGVRVNVV_					0	0	0		nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6	nc|ENSG00000106290|P49848-4|TAF6	nc|ENSG00000106290|P49848-4|TAF6	MULTI-MSMS	HCT116MG_D190212_S4	4	479.7696228027344	2	479.769448	957.524344	0.56317	0.00027019	-0.059574	-2.8582E-05	0.5036	0.00024161	479.7694309042405	33.669	0.2966	33.284	33.169	33.466	-0.38426					7	5	2	0	0	0	0.011082	1	12271	12271		110.67	58.406	1	6977500			29563	2067	18711	18807	28444	28444					0.04388285783431911
SEGWDQAQP	9	Unmodified	_SEGWDQAQP_					0	0	0		SPPL2B|p.R577W|1|0.16|ENSG00000005206|chr19:2353159-2353159|C/T|missense_variant	SPPL2B|p.R577W|1|0.16|ENSG00000005206|chr19:2353159-2353159|C/T|missense_variant	SPPL2B|p.R577W|1|0.16|ENSG00000005206|chr19:2353159-2353159|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	509.245361328125	2	509.217246	1016.41994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.803	1	23.741	23.241	24.241	-0.061449								0	0	0	0.76669	1	8422	8422		12.532	1.7076	1				29564	18233	18712	18808	28445	28445					-0.08761460763946616
SEHASQSVP	9	Unmodified	_SEHASQSVP_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S1	1	471.22021484375	2	471.219788	940.425024	0.13915	6.5569E-05	0.17373	8.1865E-05	0.31288	0.00014743	471.21985831697657	19.282	1.0435	19.282	19.131	20.175	0					44	19	3	0	0	0	0.020181	3	6680	6680;6833;6994		96.285	44.016	1	14935000			29565	1027	18713	18809	28446;28447;28448	28446					-0.04757156901325743
SEHASQSVP	9	Unmodified	_SEHASQSVP_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	471.2199401855469	2	471.219788	940.425024	0.18917	8.9141E-05	0.071468	3.3677E-05	0.26064	0.00012282	471.21974726646323	19.855	1.7225	19.48	19.298	21.021	-0.37503					71	32	3	0	0	0	0.031089	3	6894	6894;7122;7381		85.272	45.315	1	80615000			29566	1027	18713	18809	28449;28450;28451	28449					-0.04757156901325743
SEHASQSVP	9	Unmodified	_SEHASQSVP_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	941.4328002929688	1	941.4323	940.425024	0.60197	0.00056672	0.18215	0.00017148	0.78412	0.0007382	941.4325309836889	19.84	1.1521	19.465	19.298	20.45	-0.37503					34	21	2	0	0	0	0.027442	2	7157	6915;7157		88.954	36.686	1	11721000			29567	1027	18713	18809	28452;28453	28453					-0.04757156901325743
SEHASQSVP	9	Unmodified	_SEHASQSVP_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S3	3	471.219970703125	2	471.219788	940.425024	0.17082	8.0495E-05	-0.097604	-4.5993E-05	0.073219	3.4502E-05	471.21971521586494	18.988	1.5618	19.057	18.875	20.437	0.069159					48	29	2	0	0	0	0.069315	2	6469	6469;6700		65.235	32.156	1	18368000			29568	1027	18713	18809	28454;28455	28454					-0.04757156901325743
SEHDQAMAA	9	Unmodified	_SEHDQAMAA_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MSMS	HCT116MG_D190212_S1	1	480.1979675292969	2	480.197999	958.381445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.402	1	18.402	17.902	18.902	0								0	0	0	0.76655	1	6323	6323		13.042	5.1323	1				29569	3062	18714	18810	28456	28456					-0.09941089670121528
SEHDQAMAA	9	Unmodified	_SEHDQAMAA_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-MSMS	HCT116MG_D190212_S2	2	480.1978454589844	2	480.197999	958.381445	-0.13719	-6.588E-05	0.31691	0.00015218	0.17971	8.6298E-05	480.19814005585624	18.762	0.36443	18.399	18.269	18.634	-0.36325					13	6	3	0	0	0	0.020181	1	6487	6487		96.285	62.182	1	18041000			29570	3062	18714	18810	28457	28457					-0.09941089670121528
SEHDQAMAA	9	Unmodified	_SEHDQAMAA_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-MATCH	HCT116MG_D190212_S1	1		2	480.197999	958.381445	0.14473	6.9501E-05	0.14362	6.8967E-05	0.28836	0.00013847	480.1980619323148	18.324	0.20856	18.324	18.193	18.402	0	-0.037491	-0.00015762	NaN	96.285	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2724000			29571	3062	18714	18810							-0.09941089670121528
SEHEFKENM	9	Unmodified	_SEHEFKENM_					0	0	0		SFMBT1|p.A664Pfs*50|1|0.1|ENSG00000163935|chr3:52907651-52907651|T/-|frameshift_variant;SFMBT1|p.K735Sfs*45|1|0.37|ENSG00000163935|chr3:52907196-52907196|T/-|frameshift_variant;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	SFMBT1|p.A664Pfs*50|1|0.1|ENSG00000163935|chr3:52907651-52907651|T/-|frameshift_variant	SFMBT1|p.A664Pfs*50|1|0.1|ENSG00000163935|chr3:52907651-52907651|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	575.7456665039062	2	575.745313	1149.47607	0.59775	0.00034415	-0.12007	-6.913E-05	0.47768	0.00027502	575.7453243974917	24.223	0.20816	23.843	23.718	23.926	-0.38003					7	3	3	0	0	0	0.16285	1	8684	8684		45.74	15.899	1	12405000			29572	4650	18715	18811	28458	28458					-0.09268575918781607
SEHEHFTDF	9	Unmodified	_SEHEHFTDF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	HCT116MG_D190212_S2	2	574.736328125	2	574.735803	1147.45705	0.51598	0.00029655	-0.10764	-6.1866E-05	0.40833	0.00023468	574.7356441729745	34.36	0.25974	34.185	34.02	34.279	-0.17512					9	4	3	0	0	0	0.0044301	1	12802	12802		144.35	115.86	1	27114000			29573	1958	18716	18812	28459	28459					-0.11077789218211365
SEHEHFTDF	9	Unmodified	_SEHEHFTDF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	574.735803	1147.45705	0.41796	0.00024022	0.38948	0.00022385	0.80744	0.00046407	574.7360209911825	34.193	0.31291	34.193	34.024	34.337	0	0.0041473	6.0961E-05	NaN	144.35	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6001800			29574	1958	18716	18812							-0.11077789218211365
SEHEKIILY	9	Unmodified	_SEHEKIILY_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	HCT116MG_D190212_S1	1	566.3050537109375	2	566.305864	1130.59717	0.23807	0.00013482	-0.3346	-0.00018949	-0.096531	-5.4666E-05	566.3055650509297	36.917	0.25926	36.917	36.783	37.042	0					10	4	3	0	0	0	0.026272	2	13780	13752;13780		90.135	55.733	1	31527000			29575	2675	18717	18813	28460;28461	28461					0.03709994786208881
SEHEKIILY	9	Unmodified	_SEHEKIILY_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	HCT116MG_D190212_S2	2	566.3062744140625	2	566.305864	1130.59717	0.40651	0.00023021	0.13782	7.8047E-05	0.54433	0.00030826	566.3058385781571	36.965	0.25756	36.85	36.705	36.963	-0.11478					13	4	4	0	0	0	0.011132	1	13841	13841		110.55	72.579	1	80301000			29576	2675	18717	18813	28462	28462					0.03709994786208881
SEHELDVAL	9	Unmodified	_SEHELDVAL_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;SOGA1|p.S558L|1|0.52|ENSG00000149639|chr20:36815769-36815769|G/A|missense_variant;SOGA1|p.Q570Rfs*87|1|0.29|ENSG00000149639|chr20:36815734-36815734|G/-|frameshift_variant;nc|ENSG00000149639|O94964-4|MTCL2;SOGA1|p.D1221Gfs*26|1|0.3|ENSG00000149639|chr20:36794420-36794421|-/C|frameshift_variant	nc|ENSG00000149639|O94964-1|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MULTI-SECPEP	HCT116MG_D190212_S2	2	506.2770080566406	2	506.750921	1011.48729	0.7159	0.00036278	-0.27581	-0.00013977	0.44009	0.00022301	506.75055781461685	42.751	0.25971	42.681	42.481	42.741	-0.069984					7	4	2	0	0	0	0.22393	1	16190	16190		19.257	0	1	7521500			29577	4069	18718	18814	28463	28463					-0.017994305530010024
SEHGGCSTP	9	Unmodified	_SEHGGCSTP_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S2	2	437.6715393066406	2	437.671617	873.328681	0.084605	3.7029E-05	0.024086	1.0542E-05	0.10869	4.7571E-05	437.6715633962672	16.78	0.41639	16.438	16.256	16.672	-0.34183					13	7	2	0	0	0	0.035914	1	5674	5674		81.613	33.267	1	18807000			29578	6305	18719	18815	28464	28464					-0.11305047732935236
SEHGGCSTP	9	Unmodified	_SEHGGCSTP_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S2	2	874.3369750976562	1	874.335957	873.328681	0.87313	0.00076341	-0.073105	-6.3918E-05	0.80003	0.00069949	874.3356805725028	16.816	0.36423	16.474	16.256	16.62	-0.34183					9	6	2	0	0	0	0.0054498	1	5684	5684		133.7	78.928	1	7448000			29579	6305	18719	18815	28465	28465					-0.11305047732935236
SEHGHVEIV	9	Unmodified	_SEHGHVEIV_					0	0	0		nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	MULTI-MSMS	HCT116MG_D190212_S1	1	503.75152587890625	2	503.751256	1005.48796	0.369	0.00018588	0.20736	0.00010446	0.57635	0.00029034	503.75089599620304	26.708	0.20849	26.708	26.605	26.813	0					5	3	2	0	0	0	0.37539	1	9688	9688		24.021	3.5669	1	2510200			29580	2102	18720	18816	28466	28466					-0.014565911132876863
SEHGHVEIV	9	Unmodified	_SEHGHVEIV_					0	0	0		nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	503.751256	1005.48796	0.57107	0.00028768	-0.19498	-9.8219E-05	0.37609	0.00018946	503.75114479246383	27.155	0.21154	26.802	26.659	26.871	-0.35254	0.047482	-4.0647E-05	NaN	24.021	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8160300			29581	2102	18720	18816							-0.014565911132876863
SEHGLVVIA	9	Unmodified	_SEHGLVVIA_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	462.7611999511719	2	462.761092	923.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.221	1	41.221	40.721	41.721	0								0	0	0	0.1044	1	15515	15515		54.774	18.729	1				29582	3640	18721	18817	28467	28467					0.04281784897477792
SEHGLVVIA	9	Unmodified	_SEHGLVVIA_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	462.7608337402344	2	462.761092	923.507631	0.064747	2.9962E-05	-0.68279	-0.00031597	-0.61805	-0.00028601	462.7606310758774	41.237	0.30779	41.169	40.986	41.293	-0.068199					10	5	3	0	0	0	0.071351	1	15577	15577		64.236	22.142	1	119370000			29583	3640	18721	18817	28468	28468					0.04281784897477792
SEHGLVVIA	9	Unmodified	_SEHGLVVIA_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	462.7610168457031	2	462.761092	923.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.482	1	41.18	40.68	41.68	-0.30185								0	0	0	0.1044	1	15432	15432		54.774	10.367	1				29584	3640	18721	18817	28469	28469					0.04281784897477792
SEHGLVVIAP	10	Unmodified	_SEHGLVVIAP_					0	0	0		ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	ESD|p.F146Lfs*11|1|0.29|ENSG00000139684|chr13:46781559-46781559|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	511.28765869140625	2	511.287474	1020.5604	0.52107	0.00026642	-0.46643	-0.00023848	0.05464	2.7937E-05	511.28709006898	43.8	0.46293	43.722	43.402	43.865	-0.078373					21	8	3	0	0	0	0.095673	1	16579	16579		74.929	24.996	1	32258000			29585	3640	18722	18818	28470	28470					0.05093742960286818
SEHINEGETA	10	Unmodified	_SEHINEGETA_					0	0	0		nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	nc|ENSG00000172270|P35613-3|BSG	nc|ENSG00000172270|P35613-3|BSG	MULTI-MSMS	HCT116MG_D190212_S2	2	543.7385864257812	2	543.738542	1085.46253	0.38213	0.00020778	0.84922	0.00046175	1.2314	0.00066953	543.7385423151543	19.075	0.36494	18.706	18.575	18.94	-0.3695					12	6	3	0	0	0	0.021264	1	6596	6596		118.07	64.236	1	17683000			29586	5245	18723	18819	28471	28471					-0.07678110426354579
SEHINEGETA	10	Unmodified	_SEHINEGETA_					0	0	0		nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	nc|ENSG00000172270|P35613-3|BSG	nc|ENSG00000172270|P35613-3|BSG	MULTI-MATCH	HCT116MG_D190212_S1	1		2	543.738542	1085.46253	0.44374	0.00024128	-0.32201	-0.00017509	0.12174	6.6193E-05	543.7383899768793	18.584	0.15616	18.584	18.454	18.61	0	-0.060878	-4.4106E-06	NaN	118.07	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4318800			29587	5245	18723	18819							-0.07678110426354579
SEHLNSYEA	9	Unmodified	_SEHLNSYEA_					0	0	0		nc|ENSG00000121749|Q8TC07|TBC1D15;ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;ENST00000546932.5_1_12:72265915-72278641:+|nuORF;TBC1D15|p.W365Gfs*22|1|0.37|ENSG00000121749|chr12:71896727-71896727|T/-|frameshift_variant;TBC1D15|p.L440Ffs*8|1|0.12|ENSG00000121749|chr12:71907102-71907103|-/T|frameshift_variant	nc|ENSG00000121749|Q8TC07|TBC1D15	nc|ENSG00000121749|Q8TC07|TBC1D15	MSMS	HCT116MG_D190212_S2	2	525.2313232421875	2	525.230353	1048.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.154	1	24.778	24.278	25.278	-0.37521								0	0	0	0.69431	1	9046	9046		19.362	1.2156	1				29588	9440	18724	18820	28472	28472					-0.07613191592463409
SEHLSVRP	8	Unmodified	_SEHLSVRP_					0	0	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MSMS	HCT116MG_D190212_S2	2	462.7193298339844	2	462.748516	923.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.004	1	24.629	24.129	25.129	-0.37521								0	0	0	0.75427	1	8986	8986		26.268	6.8291	1				29589	5639	18725	18821	28473	28473					0.01767730094900344
SEHMHQNVP	9	Unmodified	_SEHMHQNVP_					0	0	0		ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.Q1385Sfs*6|1|0.26|ENSG00000085224|chrX:77656621-77656622|-/A|frameshift_variant;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.K993Rfs*10|1|0.26|ENSG00000085224|chrX:77682278-77682278|T/-|frameshift_variant;ATRX|p.I1049*|1|0.07|ENSG00000085224|chrX:77682111-77682111|T/-|frameshift_variant;ATRX|p.I1049Nfs*4|1|0.15|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;ATRX|p.R840Kfs*9|1|0.36|ENSG00000085224|chrX:77682737-77682738|-/T|frameshift_variant	ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	ATRX|p.N1318Ifs*28|1|0.39|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7401123046875	2	539.740365	1077.46618	0.44744	0.0002415	0.045535	2.4577E-05	0.49298	0.00026608	539.7402611011981	19.737	0.72773	19.362	19.246	19.974	-0.37503					20	13	2	0	0	0	0.15273	1	6880	6880		47.749	22.349	1	6318100			29590	231	18726	18822	28474	28474					-0.06945719133500461
SEHPDQAQA	9	Unmodified	_SEHPDQAQA_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S1	1	491.71514892578125	2	491.71487	981.415188	0.40011	0.00019674	0.17435	8.573E-05	0.57446	0.00028247	491.714783349711	15.04	0.31287	15.04	14.91	15.223	0					6	5	2	0	0	0	0.21258	1	4980	4980		39.95	15.929	1	5555300			29591	2459	18727	18823	28475	28475					-0.07626344906714166
SEHPDQAQA	9	Unmodified	_SEHPDQAQA_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	491.714599609375	2	491.71487	981.415188	0.14849	7.3013E-05	0.22058	0.00010846	0.36906	0.00018147	491.7149276891873	11.926	0.27951	11.636	11.509	11.789	-0.28953					23	10	3	0	0	0	0.30117	1	3851	3851		30.637	19.813	1	1194100			29592	2459	18727	18823	28476	28476					-0.07626344906714166
SEHPDQAQA	9	Unmodified	_SEHPDQAQA_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	491.71490478515625	2	491.71487	981.415188	0.14822	7.2882E-05	0.26425	0.00012993	0.41247	0.00020282	491.7149434916892	14.903	0.57338	14.583	14.401	14.974	-0.31952					19	10	3	0	0	0	0.01389	1	4897	4897		103.75	53.815	1	19949000			29593	2459	18727	18823	28477	28477					-0.07626344906714166
SEHPDQAQA	9	Unmodified	_SEHPDQAQA_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	982.4237060546875	1	982.422464	981.415188	0.61165	0.0006009	0.40281	0.00039573	1.0145	0.00099664	982.4222053506156	14.903	0.3126	14.583	14.453	14.766	-0.31952					10	5	3	0	0	0	0.0040527	1	4915	4915		149.91	91.235	1	2515200			29594	2459	18727	18823	28478	28478					-0.07626344906714166
SEHPNSMIP	9	Unmodified	_SEHPNSMIP_					0	0	0		LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	506.2322692871094	2	506.231842	1010.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.141	1	34.983	34.483	35.483	-0.15834								0	0	0	0.24841	1	13098	13098		43.858	3.4097	1				29595	6244	18728	18824	28479	28479					-0.05567639739308561
SEHPSQTV	8	Unmodified	_SEHPSQTV_					0	0	0		nc|ENSG00000124831|Q32MZ4-3|LRRFIP1;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	442.7089538574219	2	442.709057	883.40356	0.25139	0.00011129	-0.36561	-0.00016186	-0.11422	-5.0568E-05	442.7087919474331	17.646	0.26045	17.646	17.516	17.776	0					6	4	2	0	0	0	0.41924	1	6045	6045		48.346	18.121	1	5356500			29596	9445	18729	18825	28480	28480					-0.042805419300407266
SEHPSQTV	8	Unmodified	_SEHPSQTV_					0	0	0		nc|ENSG00000124831|Q32MZ4-3|LRRFIP1;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	884.4116821289062	1	884.410837	883.40356	0.6695	0.00059212	0.047346	4.1873E-05	0.71685	0.00063399	884.4107899048878	18.188	0.20882	17.832	17.702	17.91	-0.35647					5	3	2	0	0	0	0.027354	1	6250	6250		147.06	79.715	1	5233400			29597	9445	18729	18825	28481	28481					-0.042805419300407266
SEHPSQTV	8	Unmodified	_SEHPSQTV_					0	0	0		nc|ENSG00000124831|Q32MZ4-3|LRRFIP1;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	nc|ENSG00000124831|Q32MZ4-3|LRRFIP1	MSMS	HCT116MG_D190212_S2	2	442.70977783203125	2	442.709057	883.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.184	1	17.828	17.328	18.328	-0.35647								0	0	0	0.70483	1	6235	6235		30.225	12.09	1				29598	9445	18729	18825	28482	28482					-0.042805419300407266
SEHPTLQAS	9	Unmodified	_SEHPTLQAS_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-MSMS	HCT116MG_D190212_S2	2	485.2358703613281	2	485.235439	968.456324	0.056702	2.7514E-05	0.43649	0.0002118	0.49319	0.00023931	485.23556029107743	21.89	0.26051	21.505	21.375	21.635	-0.38503					6	4	2	0	0	0	0.39784	1	7761	7761		22.736	5.794	1	7931100			29599	1197	18730	18826	28483	28483					-0.02916583867238387
SEHQVVAVA	9	Unmodified	_SEHQVVAVA_					0	0	0		ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2484130859375	2	470.248349	938.482145	0.15294	7.192E-05	0.34683	0.0001631	0.49978	0.00023502	470.2483976345518	26.477	0.31115	26.115	25.972	26.284	-0.36164					11	5	3	0	0	0	0.041798	1	9589	9589		78.728	22.551	1	22147000			29600	1952	18731	18827	28484	28484					0.010443103750503724
SEHQVVAVA	9	Unmodified	_SEHQVVAVA_					0	0	0		ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	MULTI-MSMS	HCT116MG_D190212_S3	3	470.24847412109375	2	470.248349	938.482145	0.33517	0.00015762	-0.21327	-0.00010029	0.12191	5.7326E-05	470.2481476669213	26.17	0.31283	26.042	25.859	26.172	-0.12795					8	5	2	0	0	0	0.061422	1	9382	9382		69.105	25.247	1	10980000			29601	1952	18731	18827	28485	28485					0.010443103750503724
SEHQVVAVA	9	Unmodified	_SEHQVVAVA_					0	0	0		ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	470.248349	938.482145	0.39299	0.0001848	-0.1935	-9.0991E-05	0.19949	9.3811E-05	470.2482206018001	26.11	0.26094	26.11	25.927	26.188	0	0.02116	-0.00027014	NaN	78.728	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3366600			29602	1952	18731	18827							0.010443103750503724
SEHRQALAA	9	Unmodified	_SEHRQALAA_					0	0	0		ENSG00000165312|ENST00000376495|OTUD1	ENSG00000165312|ENST00000376495|OTUD1	ENSG00000165312|ENST00000376495|OTUD1	MSMS	HCT116MG_D190212_S1	1	491.7569274902344	2	491.756872	981.499192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.241	1	18.241	17.741	18.741	0								0	0	0	0.27468	1	6258	6258		41.956	5.8285	1				29603	4763	18732	18828	28486	28486					0.007702309808450991
SEHRVAGA	8	Unmodified	_SEHRVAGA_					0	0	0		ENST00000535819.1_3_12:27148336-27167248:-|nuORF;ENST00000539399.1_1_12:27152691-27167248:-|nuORF;ENSG00000064115|ENST00000343028|TM7SF3	ENST00000535819.1_3_12:27148336-27167248:-|nuORF	ENST00000535819.1_3_12:27148336-27167248:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	413.7119140625	2	413.711934	825.409314	0.045265	1.8727E-05	0.18806	7.7804E-05	0.23333	9.6531E-05	413.7119026366032	14.832	0.1561	14.832	14.702	14.858	0					4	2	2	0	0	0	0.061239	1	4890	4890		111.29	60.432	1	8089300			29604	1136	18733	18829	28487	28487					-0.01037398627715902
SEHSHSTTLP	10	Unmodified	_SEHSHSTTLP_					0	0	0		ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	548.7796020507812	2	548.256902	1094.49925	0.50022	0.00027425	-0.22531	-0.00012353	0.27491	0.00015072	548.2565802149521	22.688	0.77852	22.303	21.843	22.622	-0.3852					24	14	2	0	0	0	0.27462	1	8087	8087		18.146	0.011366	1	6728000			29605	3186	18734	18830	28488	28488					-0.04421813809813102
SEHSVIKPP	9	Unmodified	_SEHSVIKPP_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;WDR47|p.L759Ffs*18|1|0.26|ENSG00000085433|chr1:108981854-108981855|-/A|frameshift_variant	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MSMS	HCT116MG_D190212_S2	2	497.2720031738281	2	497.271824	992.529095	0.33501	0.00016659	-0.0061391	-3.0528E-06	0.32887	0.00016354	497.27181268971117	25.737	0.93624	25.368	24.718	25.654	-0.36914					25	17	2	0	0	0	0.0043772	1	9293	9293		145.13	86.451	1	13299000			29606	9392	18735	18831	28489	28489					0.03253169926188093
SEHSVIKPP	9	Unmodified	_SEHSVIKPP_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;WDR47|p.L759Ffs*18|1|0.26|ENSG00000085433|chr1:108981854-108981855|-/A|frameshift_variant	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MSMS	HCT116MG_D190212_S3	3	497.2716979980469	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.37	1	25.264	24.764	25.764	-0.10618								0	0	0	0.044501	1	9054	9054		71.922	28.064	1				29607	9392	18735	18831	28490	28490					0.03253169926188093
SEHSVIKPP	9	Unmodified	_SEHSVIKPP_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;WDR47|p.L759Ffs*18|1|0.26|ENSG00000085433|chr1:108981854-108981855|-/A|frameshift_variant	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MSMS	HCT116MG_D190212_S4	4	497.27191162109375	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.6	1	25.315	24.815	25.815	-0.28547								0	0	0	0.61599	1	9080	9080		23.148	6.2061	1				29608	9392	18735	18831	28491	28491					0.03253169926188093
SEHWERDE	8	Unmodified	_SEHWERDE_					0	0	0			REV__FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	REV__FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	543.7386474609375	2	544.225602	1086.43665	0.42978	0.0002339	0.2029	0.00011043	0.63269	0.00034432	544.2257125046935	18.74	0.26056	18.74	18.558	18.819	0					6	4	2	0	0	0	0.81821	1	6416	6416		9.3474	1.4373	1	1775100	+		29609	16836	18736	18832	28492	28492					-0.10310959878006543
SEHYVSIL	8	Unmodified	_SEHYVSIL_					0	0	0		ENST00000555679.5_1_14:90722941-90730197:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1	ENST00000555679.5_1_14:90722941-90730197:+|nuORF	ENST00000555679.5_1_14:90722941-90730197:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	474.2455139160156	2	474.245275	946.475997	0.38006	0.00018024	0.20725	9.8288E-05	0.58731	0.00027853	474.24528707141656	45.062	0.26222	44.97	44.839	45.101	-0.092472					7	4	2	0	0	0	0.36164	1	17153	17153		53.576	10.608	1	16253000			29610	1731	18737	18833	28493	28493					0.0006179214353778661
SEIAQHEA	8	Unmodified	_SEIAQHEA_					0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	442.70916748046875	2	442.709057	883.40356	0.068377	3.0271E-05	0.34292	0.00015181	0.4113	0.00018208	442.7090485360706	20.255	0.36563	19.876	19.657	20.023	-0.37949					11	6	2	0	0	0	0.60054	1	7110	7110		32.305	5.4218	1	5074400	+		29611	11062	18738	18834	28494	28494					-0.042805419300407266
SEIAQHEA	8	Unmodified	_SEIAQHEA_					0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	442.708984375	2	442.709057	883.40356	0.11219	4.9668E-05	-0.025439	-1.1262E-05	0.086753	3.8406E-05	442.70893677847806	19.456	0.46883	19.516	19.229	19.698	0.05983					16	8	3	0	0	0	0.51336	1	6654	6654		39.957	5.8549	1	7121200	+		29612	11062	18738	18834	28495	28495					-0.042805419300407266
SEIAQHEA	8	Unmodified	_SEIAQHEA_					0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	442.708984375	2	442.709057	883.40356	0.26317	0.00011651	-0.13545	-5.9964E-05	0.12773	5.6546E-05	442.7088741037641	19.766	0.45804	19.572	19.226	19.684	-0.19368					12	8	2	0	0	0	0.60054	1	6729	6729		32.305	9.1571	1	1626500	+		29613	11062	18738	18834	28496	28496					-0.042805419300407266
SEIAQHEA	8	Unmodified	_SEIAQHEA_					0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	442.709057	883.40356	0.068377	3.0271E-05	0.34292	0.00015181	0.4113	0.00018208	442.7090485360706	20.255	0.36563	19.876	19.657	20.023	-0.37949	0.22104	0.0002611	NaN	39.957	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5074400	+		29614	11062	18738	18834							-0.042805419300407266
SEIAQHEA	8	Unmodified	_SEIAQHEA_					0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	442.709057	883.40356	0.11219	4.9668E-05	-0.025439	-1.1262E-05	0.086753	3.8406E-05	442.70893677847806	19.456	0.46883	19.516	19.229	19.698	0.05983	-0.13886	-6.5053E-05	NaN	39.957	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7121200	+		29615	11062	18738	18834							-0.042805419300407266
SEIAQHEA	8	Unmodified	_SEIAQHEA_					0	0	0			REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	REV__ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	442.709057	883.40356	0.26317	0.00011651	-0.13545	-5.9964E-05	0.12773	5.6546E-05	442.7088741037641	19.766	0.45804	19.572	19.226	19.684	-0.19368	-0.082187	-0.00016246	NaN	39.957	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1626500	+		29616	11062	18738	18834							-0.042805419300407266
SEIDMNDIKA	10	Unmodified	_SEIDMNDIKA_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	HCT116MG_D190212_S1	1	568.2694091796875	2	568.268621	1134.52269	0.49178	0.00027946	0.48897	0.00027787	0.98075	0.00055733	568.2690763356809	37.681	0.20886	37.681	37.55	37.759	0					5	3	2	0	0	0	0.65928	1	14116	14116		23.79	8.5413	1	6147500			29617	3324	18739	18835	28497	28497					-0.03919136087483821
SEIDMNDIKA	10	Unmodified	_SEIDMNDIKA_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	HCT116MG_D190212_S2	2	568.2686157226562	2	568.268621	1134.52269	0.20513	0.00011657	0.023769	1.3507E-05	0.2289	0.00013007	568.2687468056278	37.732	0.2567	37.629	37.486	37.743	-0.10318					6	4	2	0	0	0	0.031798	1	14172	14172		100.71	49.079	1	47480000			29618	3324	18739	18835	28498	28498					-0.03919136087483821
SEIDMNDIKA	10	Unmodified	_SEIDMNDIKA_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	HCT116MG_D190212_S3	3	568.2693481445312	2	568.268621	1134.52269	0.54179	0.00030788	0.841	0.00047792	1.3828	0.0007858	568.2689541943099	37.911	0.19526	37.61	37.534	37.729	-0.30137					14	9	2	0	0	0	0.15757	1	14028	14028		63.227	29.125	1	21248000			29619	3324	18739	18835	28499	28499					-0.03919136087483821
SEIDMNDIKA	10	Unmodified	_SEIDMNDIKA_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MSMS	HCT116MG_D190212_S4	4	568.2694091796875	2	568.268621	1134.52269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.101	1	37.718	37.218	38.218	-0.38283								0	0	0	0.90669	1	13951	13951		14.405	0.49933	1				29620	3324	18739	18835	28500	28500					-0.03919136087483821
SEIDMSVKA	9	Unmodified	_SEIDMSVKA_					0	0	0		ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	490.2419738769531	2	490.241875	978.469197	0.51376	0.00025187	-0.20669	-0.00010133	0.30707	0.00015054	490.2417263643048	33.117	0.40889	33.117	32.887	33.296	0					14	7	3	0	0	0	0.026999	1	12246	12246		89.401	28.043	1	34919000			29621	3853	18740	18836	28501	28501					-0.02089888799343953
SEIDMSVKA	9	Unmodified	_SEIDMSVKA_					0	0	0		ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	490.2422790527344	2	490.241875	978.469197	0.57859	0.00028365	-0.0057106	-2.7996E-06	0.57288	0.00028085	490.24190479756425	33.341	0.41228	33.148	32.966	33.378	-0.19297					19	7	4	0	0	0	0.0058997	1	12350	12350		129.77	48.159	1	323430000			29622	3853	18740	18836	28502	28502					-0.02089888799343953
SEIDMSVKA	9	Unmodified	_SEIDMSVKA_					0	0	0		ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	979.477294921875	1	979.476473	978.469197	1.0164	0.00099554	-0.19135	-0.00018742	0.82505	0.00080812	979.4763570073675	33.341	0.25888	33.148	32.966	33.225	-0.19297					10	4	3	0	0	0	0.0041644	1	12369	12369		148.27	69.54	1	73078000			29623	3853	18740	18836	28503	28503					-0.02089888799343953
SEIDMSVKA	9	Unmodified	_SEIDMSVKA_					0	0	0		ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	490.24200439453125	2	490.241875	978.469197	0.17236	8.4499E-05	0.45921	0.00022513	0.63158	0.00030962	490.2419883636552	33.464	0.39616	33.174	33.011	33.408	-0.29013					22	7	5	0	0	0	0.0063854	1	12283	12283		125.53	54.396	1	108230000			29624	3853	18740	18836	28504	28504					-0.02089888799343953
SEIDMSVKA	9	Unmodified	_SEIDMSVKA_					0	0	0		ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	979.4776611328125	1	979.476473	978.469197	0.75981	0.00074421	0.03648	3.5731E-05	0.79629	0.00077994	979.4765978415372	33.464	0.25463	33.174	33.049	33.304	-0.29013					8	4	2	0	0	0	0.0201	1	12309	12309		96.367	52.508	1	7443900			29625	3853	18740	18836	28505	28505					-0.02089888799343953
SEIDMSVKA	9	Unmodified	_SEIDMSVKA_					0	0	0		ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	490.2421569824219	2	490.241875	978.469197	0.30671	0.00015036	0.21457	0.00010519	0.52129	0.00025556	490.2418138987975	33.574	0.34368	33.189	33.018	33.362	-0.38426					18	7	4	0	0	0	0.0080847	1	12213	12213		118.07	46.935	1	41061000			29626	3853	18740	18836	28506	28506					-0.02089888799343953
SEIDMSVKA	9	Unmodified	_SEIDMSVKA_					0	0	0		ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	979.4783325195312	1	979.476473	978.469197	0.85341	0.0008359	-0.16388	-0.00016052	0.68953	0.00067538	979.4762095485983	33.574	0.22253	33.189	33.088	33.311	-0.38426					6	4	2	0	0	0	0.0201	1	12233	12233		96.367	48.618	1	3699900			29627	3853	18740	18836	28507	28507					-0.02089888799343953
SEIDMSVKA	9	Oxidation (M)	_SEIDM(Oxidation (M))SVKA_		SEIDM(1)SVKA		SEIDM(64)SVKA	0	0	1		ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENST00000490674.1_1_2:113416785-113418150:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	498.2391662597656	2	498.239332	994.464112	0.45525	0.00022683	-0.0099427	-4.9538E-06	0.44531	0.00022187	498.23924267978475	25.061	0.31191	24.686	24.504	24.816	-0.37521					7	5	2	0	0	0	0.071914	1	9019	9019		63.961	24.011	1	21287000			29628	3853	18740	18837	28508	28508		86			-0.033341926619641526
SEIELFRVF	9	Unmodified	_SEIELFRVF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	HCT116MG_D190212_S1	1	570.3518676757812	2	570.308406	1138.60226	0.28297	0.00016138	-0.2262	-0.000129	0.056771	3.2377E-05	570.3086325091772	57.248	0.25949	57.248	57.1	57.36	0					8	4	3	0	0	0	0.1378	1	22019	22019		55.503	27.016	1	12160000			29629	3846	18741	18838	28509	28509					0.03850298648808348
SEIELFRVF	9	Unmodified	_SEIELFRVF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S2	2	570.3085327148438	2	570.308406	1138.60226	0.47285	0.00026967	-0.19616	-0.00011187	0.27669	0.0001578	570.3082823347673	57.412	0.15628	57.237	57.159	57.315	-0.17494					4	2	2	0	0	0	0.11363	1	22189	22189		55.503	27.016	1	180750000			29630	3846	18741	18838	28510	28510					0.03850298648808348
SEIEQLRTGF	10	Unmodified	_SEIEQLRTGF_					0	0	0		UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant;UNC13C|p.P2056Qfs*10|1|0.33|ENSG00000137766|chr15:54622384-54622384|C/-|frameshift_variant;ENSG00000137766|ENST00000260323|UNC13C;UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant;UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant;UNC13C|p.S349Qfs*15|1|0.17|ENSG00000137766|chr15:54013944-54013944|T/-|frameshift_variant;UNC13C|p.F542Sfs*65|1|0.06|ENSG00000137766|chr15:54014523-54014523|T/-|frameshift_variant	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	590.2328491210938	2	590.303852	1178.59315	0.57962	0.00034215	-2.8469	-0.0016805	-2.2673	-0.0013384	590.3021714322914	28.419	0.20689	28.089	27.977	28.184	-0.32987					5	3	2	0	0	0	0.30812	1	10334	10334		7.2892	2.5332	1	8369800			29631	3497	18742	18839	28511	28511					0.010999052924717034
SEIEQLRTGF	10	Unmodified	_SEIEQLRTGF_					0	0	0		UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant;UNC13C|p.P2056Qfs*10|1|0.33|ENSG00000137766|chr15:54622384-54622384|C/-|frameshift_variant;ENSG00000137766|ENST00000260323|UNC13C;UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant;UNC13C|p.W1592Gfs*7|1|0.85|ENSG00000137766|chr15:54393104-54393104|T/-|frameshift_variant;UNC13C|p.S349Qfs*15|1|0.17|ENSG00000137766|chr15:54013944-54013944|T/-|frameshift_variant;UNC13C|p.F542Sfs*65|1|0.06|ENSG00000137766|chr15:54014523-54014523|T/-|frameshift_variant	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	UNC13C|p.D1718Rfs*8|1|0.19|ENSG00000137766|chr15:54500163-54500164|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	590.303852	1178.59315	0.73922	0.00043636	-2.7825	-0.0016425	-2.0433	-0.0012062	590.8035732353007	28.034	0.15622	28.034	27.956	28.113	0	-0.027204	2.1486E-05	NaN	1.6526	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6620400			29632	3497	18742	18839							0.010999052924717034
SEIERQAQV	9	Unmodified	_SEIERQAQV_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MSMS	HCT116MG_D190212_S2	2	530.275390625	2	530.275095	1058.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.248	1	23.868	23.368	24.368	-0.38003								0	0	0	0.00072443	1	8680	8680		128.93	42.601	1				29633	4045	18743	18840	28512	28512					0.008710630869018132
SEIERQAQV	9	Unmodified	_SEIERQAQV_					0	0	0		nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	nc|ENSG00000149182|Q8N6H7-2|ARFGAP2	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2753295898438	2	530.275095	1058.53564	0.41571	0.00022044	0.0034576	1.8335E-06	0.41917	0.00022228	530.2748293484931	23.774	0.20856	23.712	23.582	23.791	-0.061449					7	3	3	0	0	0	0.064006	1	8432	8432		67.838	29.864	1	8351800			29634	4045	18743	18840	28513	28513					0.008710630869018132
SEIESVKISA	10	Unmodified	_SEIESVKISA_					0	0	0		nc|ENSG00000151725|Q71F23-3|CENPU;ENSG00000151725|ENST00000281453|CENPU	nc|ENSG00000151725|Q71F23-3|CENPU	nc|ENSG00000151725|Q71F23-3|CENPU	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7880249023438	2	531.787504	1061.56045	0.38866	0.00020669	-0.1278	-6.7964E-05	0.26086	0.00013872	531.7872701019132	35.341	0.24717	35.199	35.036	35.283	-0.14245					7	4	2	0	0	0	0.18147	1	13197	13197		61.09	15.39	1	31572000			29635	4124	18744	18841	28514	28514					0.03213698169633972
SEIESVKISA	10	Unmodified	_SEIESVKISA_					0	0	0		nc|ENSG00000151725|Q71F23-3|CENPU;ENSG00000151725|ENST00000281453|CENPU	nc|ENSG00000151725|Q71F23-3|CENPU	nc|ENSG00000151725|Q71F23-3|CENPU	MSMS	HCT116MG_D190212_S4	4	531.7886962890625	2	531.787504	1061.56045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.634	1	35.248	34.748	35.748	-0.38606								0	0	0	0.35951	1	13025	13025		55.235	13.395	1				29636	4124	18744	18841	28515	28515					0.03213698169633972
SEIEVAQA	8	Unmodified	_SEIEVAQA_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	HCT116MG_D190212_S2	2	846.4208984375	1	846.420339	845.413062	0.47692	0.00040367	-0.088641	-7.5028E-05	0.38828	0.00032865	846.4203098154619	30.492	0.41144	30.208	30.079	30.491	-0.28453					9	7	2	0	0	0	0.062806	1	11238	11238		109.63	20.202	1	33772000			29637	9371	18745	18842	28516	28516					-0.015827736445316987
SEIEVAQA	8	Unmodified	_SEIEVAQA_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4;MAP4|p.R919Gfs*14|1|0.44|ENSG00000047849|chr3:47870917-47870917|G/-|frameshift_variant;MAP4|p.T960Qfs*35|1|0.3|ENSG00000047849|chr3:47869309-47869309|T/-|frameshift_variant;MAP4|p.V999*|1|0.25|ENSG00000047849|chr3:47867318-47867318|T/-|frameshift_variant;ENSG00000047849|ENST00000683076|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	HCT116MG_D190212_S3	3	846.4204711914062	1	846.420339	845.413062	0.66474	0.00056265	-0.028495	-2.4119E-05	0.63625	0.00053853	846.4204005278275	30.601	0.42992	30.351	30.238	30.668	-0.24946					15	12	2	0	0	0	0.10511	1	11139	11139		93.883	19.487	1	15463000			29638	9371	18745	18842	28517	28517					-0.015827736445316987
SEIKHEAF	8	Unmodified	_SEIKHEAF_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	480.7432556152344	2	480.742899	959.471246	0.24343	0.00011703	0.20157	9.6905E-05	0.44501	0.00021393	480.74288795503423	24.735	0.31384	24.735	24.568	24.882	0					14	5	3	0	0	0	0.047269	1	8861	8861		126.57	62.33	1	47562000			29639	4314	18746	18843	28518	28518					-0.010110919992484924
SEIKHEAF	8	Unmodified	_SEIKHEAF_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	480.74285888671875	2	480.742899	959.471246	0.23841	0.00011461	0.07593	3.6503E-05	0.31434	0.00015112	480.7428042062318	25.321	0.41675	24.945	24.66	25.076	-0.37521					16	7	3	0	0	0	0.065346	1	9117	9117		106.94	53.365	1	148520000			29640	4314	18746	18843	28519	28519					-0.010110919992484924
SEIKHEAF	8	Unmodified	_SEIKHEAF_					0	0	0		SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	SMG1|p.A3214Rfs*29|1|0.06|ENSG00000157106|chr16:18828132-18828133|-/ATTTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	480.7430114746094	2	480.742899	959.471246	0.25541	0.00012278	0.070863	3.4067E-05	0.32627	0.00015685	480.74310823749005	24.721	0.20813	24.638	24.497	24.705	-0.083694					5	3	2	0	0	0	0.70219	1	8817	8817		22.736	3.4793	1	2487000			29641	4314	18746	18843	28520	28520					-0.010110919992484924
SEIKKDIEAYY	11	Unmodified	_SEIKKDIEAYY_					0	0	0			REV__tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1	REV__tr|U7T5D0|U7T5D0_FUSNUMembrane-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00525PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	680.3475952148438	2	679.84555	1357.67655	0.2227	0.0001514	0.21581	0.00014672	0.4385	0.00029812	679.8456754599904	38.286	0.47196	38.193	38.011	38.483	-0.09301					23	8	4	0	0	0	0.59037	1	14367	14367		36.506	1.5741	1	375540000	+		29642	17984	18747	18844	28521	28521					0.012015969496587786
SEIKNRDLVY	10	Unmodified	_SEIKNRDLVY_					0	0	0		ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	619.3340454101562	2	618.832777	1235.651	0.40885	0.00025301	-0.48535	-0.00030035	-0.076498	-4.734E-05	619.3339165415983	42.143	0.30997	42.075	41.964	42.274	-0.068199					6	5	2	0	0	0	0.30526	1	15992	15992		3.2813	0	1	12079000			29643	3122	18748	18845	28522	28522					0.04260167217898925
SEIKNYNFQQ	10	Unmodified	_SEIKNYNFQQ_					0	0	0		ENSG00000122694|ENST00000377960|GLIPR2	ENSG00000122694|ENST00000377960|GLIPR2	ENSG00000122694|ENST00000377960|GLIPR2	MSMS	HCT116MG_D190212_S2	2	635.8766479492188	2	635.806759	1269.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.29	1	28.974	28.474	29.474	-0.31613								0	0	0	0.92917	1	10723	10723		9.3831	3.1773	1				29644	2779	18749	18846	28523	28523					-0.02504996195852982
SEILEPSITP	10	Unmodified	_SEILEPSITP_					0	0	0		WBP4|p.D122Ifs*8|1|0.32|ENSG00000120688|chr13:41068655-41068655|A/-|frameshift_variant;nc|ENSG00000120688|O75554-2|WBP4;WBP4|p.T341Nfs*22|1|0.36|ENSG00000120688|chr13:41082798-41082799|-/A|frameshift_variant;WBP4|p.K365Nfs*5|1|0.08|ENSG00000120688|chr13:41082875-41082875|A/-|frameshift_variant;ENSG00000120688|ENST00000379487|WBP4	WBP4|p.D122Ifs*8|1|0.32|ENSG00000120688|chr13:41068655-41068655|A/-|frameshift_variant	WBP4|p.D122Ifs*8|1|0.32|ENSG00000120688|chr13:41068655-41068655|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	543.3020629882812	2	543.289879	1084.56521	0.44034	0.00023923	-3.7339	-0.0020286	-3.2936	-0.0017894	543.287670369174	16.404	0.31342	16.062	15.839	16.152	-0.34183					7	5	2	0	0	0	0.71349	1	5433	5433		19.257	1.1106	1	1510300			29645	2706	18750	18847	28524	28524					0.026305823123948358
SEILQKEVY	9	Unmodified	_SEILQKEVY_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000478999.1_1_1:150039540-150040875:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	HCT116MG_D190212_S2	2	554.7977294921875	2	554.797872	1107.58119	0.21571	0.00011967	-0.57402	-0.00031846	-0.35831	-0.00019879	554.7974568843875	35.486	0.304	35.343	35.237	35.541	-0.14245					7	5	2	0	0	0	0.060947	1	13251	13251		69.338	29.389	1	50097000			29646	3425	18751	18848	28525	28525					0.0317028854929049
SEILQKEVY	9	Unmodified	_SEILQKEVY_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000478999.1_1_1:150039540-150040875:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MSMS	HCT116MG_D190212_S3	3	555.3009643554688	2	554.797872	1107.58119	0.74706	0.00041447	0.29133	0.00016163	1.0384	0.00057609	555.299831056501	35.7	0.16878	35.401	35.314	35.483	-0.29922					11	7	2	0	0	0	0.012531	2	13154	13154;13178		107.1	59.351	1	11719000			29647	3425	18751	18848	28526;28527	28526					0.0317028854929049
SEILQKEVY	9	Unmodified	_SEILQKEVY_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000478999.1_1_1:150039540-150040875:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MSMS	HCT116MG_D190212_S4	4	554.7972412109375	2	554.797872	1107.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.854	1	35.468	34.968	35.968	-0.38606								0	0	0	0.17014	1	13099	13099		49.527	18.259	1				29648	3425	18751	18848	28528	28528					0.0317028854929049
SEILQKEVY	9	Unmodified	_SEILQKEVY_					0	0	0		nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000478999.1_1_1:150039540-150040875:+|nuORF	nc|ENSG00000136631|Q9NRW7-2|VPS45	nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-MATCH	HCT116MG_D190212_S1	1		2	554.797872	1107.58119	0.58403	0.00032402	-0.14093	-7.8185E-05	0.44311	0.00024584	554.7978382089073	35.397	0.31046	35.397	35.267	35.578	0	0.016943	-3.8865E-05	NaN	107.1	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5926800			29649	3425	18751	18848							0.0317028854929049
SEILYSAPP	9	Unmodified	_SEILYSAPP_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.S331P|1|0.25|ENSG00000082641|chr17:48058313-48058313|T/C|missense_variant;NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	HCT116MG_D190212_S2	2	976.4993286132812	1	976.498589	975.491313	0.68266	0.00066661	0.68043	0.00066444	1.3631	0.001331	976.4991212498478	41.011	0.77277	40.941	40.571	41.343	-0.069626					19	14	2	0	0	0	0.019399	1	15446	15446		97.075	39.603	1	22778000			29650	1424	18752	18849	28529	28529					0.0025865894070875584
SEILYSAPP	9	Unmodified	_SEILYSAPP_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.S331P|1|0.25|ENSG00000082641|chr17:48058313-48058313|T/C|missense_variant;NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	HCT116MG_D190212_S3	3	976.4993896484375	1	976.498589	975.491313	0.66492	0.0006493	0.42659	0.00041657	1.0915	0.0010659	976.499282992596	41.13	0.62509	40.828	40.475	41.1	-0.30185					20	11	2	0	0	0	0.014796	1	15240	15240		101.72	57.315	1	10790000			29651	1424	18752	18849	28530	28530					0.0025865894070875584
SEILYSAPP	9	Unmodified	_SEILYSAPP_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.S331P|1|0.25|ENSG00000082641|chr17:48058313-48058313|T/C|missense_variant;NFE2L1|p.G370Afs*44|4|0.27|ENSG00000082641|chr17:48058426-48058426|G/-|frameshift_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	HCT116MG_D190212_S4	4	976.4992065429688	1	976.498589	975.491313	0.60459	0.00059038	-0.14211	-0.00013877	0.46248	0.00045161	976.4983135661679	41.272	0.35541	40.895	40.574	40.93	-0.37732					11	7	2	0	0	0	0.058138	1	15117	15117		70.716	34.671	1	4444500			29652	1424	18752	18849	28531	28531					0.0025865894070875584
SEITDTVAA	9	Unmodified	_SEITDTVAA_					0	0	0		nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-2|WNK1	nc|ENSG00000060237|Q9H4A3-2|WNK1	MULTI-MSMS	HCT116MG_D190212_S3	3	906.4425048828125	1	906.441468	905.434192	0.54143	0.00049077	0.49876	0.00045209	1.0402	0.00094287	906.4419743920574	32.298	0.26058	32.02	31.89	32.15	-0.27841					8	4	2	0	0	0	0.019399	1	11839	11839		97.075	36.685	1	6237500			29653	1107	18753	18850	28532	28532					-0.022308083356733732
SEIYIHGL	8	Unmodified	_SEIYIHGL_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	HCT116MG_D190212_S2	2	466.2479553222656	2	466.247818	930.481082	0.27922	0.00013019	0.28607	0.00013338	0.56529	0.00026356	466.2477326219172	45.185	0.20857	45.092	44.996	45.205	-0.092476					8	3	3	0	0	0	0.37136	1	17192	17192		52.693	5.7722	1	24549000			29654	5246	18754	18851	28533	28533					0.013060960061352489
SEIYIHGL	8	Unmodified	_SEIYIHGL_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MATCH	HCT116MG_D190212_S1	1		2	466.247818	930.481082	0.19717	9.1931E-05	0.29209	0.00013618	0.48926	0.00022812	466.24772262578153	45.218	0.2094	45.218	45.034	45.244	0	0.062818	3.9765E-06	NaN	52.693	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12547000			29655	5246	18754	18851							0.013060960061352489
SEKCELTQA	9	Unmodified	_SEKCELTQA_					0	0	0			REV__ENSG00000151014|ENST00000280614|NOCT	REV__ENSG00000151014|ENST00000280614|NOCT	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7586669921875	2	504.736957	1007.45936	0.46731	0.00023587	0.11221	5.6637E-05	0.57952	0.00029251	504.7368894090964	20.903	0.26016	20.52	20.39	20.651	-0.38288					11	4	3	0	0	0	0.59184	1	7277	7277		11.64	0.81637	1	31184000	+		29656	12591	18755	18852	28534	28534					-0.044070768047504316
SEKDHTQANIQ	11	Unmodified	_SEKDHTQANIQ_					0	0	0		ENST00000488533.5_1_3:119421909-119425810:+|nuORF;ENST00000469659.5_1_3:119421909-119428743:+|nuORF;nc|ENSG00000183833|Q7Z4T9-2|CFAP91;nc|ENSG00000183833|Q7Z4T9-1|CFAP91;nc|ENSG00000183833|Q7Z4T9-8|CFAP91;ENST00000482927.5_1_3:119422024-119469941:+|nuORF;ENSG00000183833|ENST00000273390|CFAP91	ENST00000488533.5_1_3:119421909-119425810:+|nuORF	ENST00000488533.5_1_3:119421909-119425810:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	635.77490234375	2	635.804748	1269.59494	0.52483	0.00033369	0.18367	0.00011678	0.7085	0.00045046	635.804802451616	24.12	1.0392	23.861	23.209	24.248	-0.25816					47	19	4	0	0	0	0.7093	1	8431	8431		18.373	18.373	1	34433000			29657	5744	18756	18853	28535	28535					-0.029070856895714314
SEKEAREGL	9	Unmodified	_SEKEAREGL_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.77423095703125	2	509.76182	1017.50909	0.46489	0.00023698	-0.017876	-9.1125E-06	0.44702	0.00022787	509.76176193412533	27.188	0.21154	26.835	26.659	26.871	-0.35254					5	3	2	0	0	0	0.1389	1	9855	9855		45.7	12.914	1	10246000	+		29658	10661	18757	18854	28536	28536					0.0010337419557799876
SEKEAREGL	9	Unmodified	_SEKEAREGL_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	HCT116MG_D190212_S3	3	509.76141357421875	2	509.76182	1017.50909	0.22884	0.00011665	0.33831	0.00017246	0.56714	0.00028911	509.7619183530935	26.95	0.31272	26.781	26.651	26.964	-0.16933					6	5	2	0	0	0	0.16306	1	9705	9705		45.7	7.524	1	6429300	+		29659	10661	18757	18854	28537	28537					0.0010337419557799876
SEKEATPVV	9	Unmodified	_SEKEATPVV_					0	0	0		PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	480.2558288574219	2	480.25584	958.497126	0.24208	0.00011626	-0.26602	-0.00012776	-0.023941	-1.1498E-05	480.2557264253991	26.319	0.52092	26.319	26.084	26.605	0					16	9	3	0	0	0	0.030039	1	9506	9506		86.332	44.492	1	15198000			29660	2579	18758	18855	28538	28538					0.01621757452392103
SEKEATPVV	9	Unmodified	_SEKEATPVV_					0	0	0		PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2557678222656	2	480.25584	958.497126	0.1294	6.2144E-05	0.053955	2.5912E-05	0.18335	8.8056E-05	480.2557319498839	26.672	0.46932	26.311	26.076	26.545	-0.36145					24	8	4	0	0	0	0.037825	1	9641	9641		80.676	36.818	1	92126000			29661	2579	18758	18855	28539	28539					0.01621757452392103
SEKEATPVV	9	Unmodified	_SEKEATPVV_					0	0	0		PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	959.5035400390625	1	959.504403	958.497126	0.54841	0.0005262	-0.028072	-2.6935E-05	0.52034	0.00049927	959.5040535735295	26.671	0.3128	26.31	26.128	26.441	-0.36164					9	5	2	0	0	0	0.0201	1	9669	9669		96.367	46.434	1	17409000			29662	2579	18758	18855	28540	28540					0.01621757452392103
SEKEATPVV	9	Unmodified	_SEKEATPVV_					0	0	0		PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	480.2561950683594	2	480.25584	958.497126	0.33714	0.00016192	-0.0089059	-4.2771E-06	0.32824	0.00015764	480.2557441107932	26.359	0.67697	26.21	25.942	26.619	-0.14924					31	12	4	0	0	0	0.026999	1	9408	9408		89.401	39.468	1	45642000			29663	2579	18758	18855	28541	28541					0.01621757452392103
SEKEATPVV	9	Unmodified	_SEKEATPVV_					0	0	0		PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	959.5048828125	1	959.504403	958.497126	0.81592	0.00078288	-0.52027	-0.0004992	0.29566	0.00028369	959.5037774190059	26.346	0.26049	26.197	26.046	26.307	-0.14924					7	4	2	0	0	0	0.0201	1	9469	9469		96.367	52.508	1	3827600			29664	2579	18758	18855	28542	28542					0.01621757452392103
SEKEATPVV	9	Unmodified	_SEKEATPVV_					0	0	0		PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;PRRC2C|p.P2791Lfs*5|1|0.1|ENSG00000117523|chr1:171591761-171591761|C/-|frameshift_variant;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	PRRC2C|p.K1018Nfs*7|1|0.21|ENSG00000117523|chr1:171540521-171540521|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	480.2559814453125	2	480.25584	958.497126	0.23273	0.00011177	0.034539	1.6588E-05	0.26727	0.00012836	480.25577565706834	26.612	0.57175	26.312	25.974	26.545	-0.30087					19	10	3	0	0	0	0.030039	1	9461	9461		86.332	44.492	1	14697000			29665	2579	18758	18855	28543	28543					0.01621757452392103
SEKEIQKLP	9	Unmodified	_SEKEIQKLP_					0	0	0		ENSG00000086619|ENST00000354619|ERO1B	ENSG00000086619|ENST00000354619|ERO1B	ENSG00000086619|ENST00000354619|ERO1B	MULTI-MSMS	HCT116MG_D190212_S4	4	536.3060302734375	2	536.305864	1070.59717	0.13703	7.3492E-05	0.3265	0.0001751	0.46354	0.0002486	536.305961926143	17.577	0.36338	17.407	17.225	17.588	-0.17047					8	6	2	0	0	0	0.59184	1	5887	5887		11.64	0	1	6046700			29666	1471	18759	18856	28544	28544					0.06469994786198185
SEKGGQPLP	9	Unmodified	_SEKGGQPLP_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	456.7430725097656	2	456.742899	911.471246	0.16775	7.6617E-05	0.18928	8.6453E-05	0.35703	0.00016307	456.7428791255157	25.252	1.4031	24.877	24.504	25.907	-0.37521					61	26	3	0	0	0	0.01405	2	9000	9000;9241		103.35	31.431	1	58426000			29667	6690	18760	18857	28545;28546	28545					0.01196908000770236
SEKGGQPLP	9	Unmodified	_SEKGGQPLP_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	912.47900390625	1	912.478522	911.471246	0.72123	0.0006581	-0.1793	-0.0001636	0.54193	0.0004945	912.4782385377401	25.253	1.0397	24.878	24.504	25.544	-0.37521					32	19	2	0	0	0	0.012596	1	9022	9022		106.94	28.212	1	21203000			29668	6690	18760	18857	28547	28547					0.01196908000770236
SEKGGQPLP	9	Unmodified	_SEKGGQPLP_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	MULTI-MSMS	HCT116MG_D190212_S3	3	456.7430725097656	2	456.742899	911.471246	0.37022	0.0001691	-0.016713	-7.6335E-06	0.35351	0.00016146	456.74278876346483	24.872	1.6138	24.788	24.185	25.799	-0.083694					81	30	3	0	0	0	0.023778	3	8705	8705;8848;8936		92.653	20.731	1	37990000			29669	6690	18760	18857	28548;28549;28550	28548					0.01196908000770236
SEKGGQPLP	9	Unmodified	_SEKGGQPLP_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	MULTI-MSMS	HCT116MG_D190212_S3	3	912.4786987304688	1	912.478522	911.471246	0.76518	0.00069821	0.035746	3.2617E-05	0.80092	0.00073082	912.4784032323151	24.847	1.1974	24.763	24.237	25.434	-0.083694					36	22	2	0	0	0	0.0094709	2	8995	8757;8995		114.65	25.695	1	5080800			29670	6690	18760	18857	28551;28552	28552					0.01196908000770236
SEKGGQPLP	9	Unmodified	_SEKGGQPLP_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	MULTI-MSMS	HCT116MG_D190212_S4	4	456.74298095703125	2	456.742899	911.471246	0.36173	0.00016522	0.017906	8.1783E-06	0.37964	0.0001734	456.74277640113314	25.026	1.4039	24.746	24.383	25.787	-0.27958					57	26	3	0	0	0	0.023778	2	8757	8757;8989		92.653	10.789	1	12562000			29671	6690	18760	18857	28553;28554	28553					0.01196908000770236
SEKGGQPLP	9	Unmodified	_SEKGGQPLP_					0	0	0		ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	ENSG00000278311|ENST00000613102|GGNBP2	MULTI-MSMS	HCT116MG_D190212_S4	4	912.4786987304688	1	912.478522	911.471246	0.88702	0.00080938	-0.025718	-2.3467E-05	0.8613	0.00078592	912.4784609934472	25.069	1.1437	24.79	24.383	25.526	-0.27958					28	21	2	0	0	0	0.023778	1	8784	8784		92.653	13.925	1	2867500			29672	6690	18760	18857	28555	28555					0.01196908000770236
SEKGRGPGAP	10	Unmodified	_SEKGRGPGAP_					0	0	0			REV__ENST00000334256.8_1_3:160254621-160283312:-|nuORF	REV__ENST00000334256.8_1_3:160254621-160283312:-|nuORF	MSMS	HCT116MG_D190212_S2	2	478.25152587890625	2	478.251423	954.488293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.354	1	21.968	21.468	22.468	-0.3852								0	0	0	0.84381	1	7915	7915		23.148	2.6948	1		+		29673	14943	18761	18858	28556	28556					0.009228286065649627
SEKHAYPGNFV	11	Unmodified	_SEKHAYPGNFV_					0	0	0			REV__SEMA3D|p.S481Rfs*88|1|0.11|ENSG00000153993|chr7:85020293-85020294|-/CTTT|frameshift_variant;REV__ENSG00000153993|ENST00000284136|SEMA3D	REV__ENSG00000153993|ENST00000284136|SEMA3D	MSMS	HCT116MG_D190212_S4	4	624.8020629882812	2	624.80402	1247.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.883	1	15.719	15.219	16.219	-0.16364								0	0	0	0.95636	1	5156	5156		2.9952	0.26005	1		+		29674	17504;12666	18762	18859	28557	28557					-0.020406749876883623
SEKHFFTSF	9	Unmodified	_SEKHFFTSF_					0	0	0		GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant;ENSG00000023171|ENST00000635736|GRAMD1B;GRAMD1A|p.T171M|1|0.29|ENSG00000089351|chr19:35010366-35010366|C/T|missense_variant;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	GRAMD1B|p.W696Mfs*13|1|0.44|ENSG00000023171|chr11:123619177-123619178|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	565.2694702148438	2	565.269281	1128.52401	0.12455	7.0403E-05	0.46124	0.00026073	0.58579	0.00033113	565.2691612379906	43.35	0.25834	43.277	43.149	43.407	-0.073376					7	4	2	0	0	0	0.3453	1	16472	16472		33.445	9.6551	1	15263000			29675	946	18763	18860	28558	28558					-0.03511133936422084
SEKHQHMY	8	Unmodified	_SEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2374877929688	2	530.237458	1058.46036	0.27536	0.00014601	0.14089	7.4706E-05	0.41625	0.00022071	530.2374465534532	16.291	0.20814	16.291	16.161	16.369	0					5	3	2	0	0	0	0.71077	1	5498	5498		21.747	13.153	1	4166900			29676	2235	18764	18861	28559	28559					-0.06652817645158393
SEKHQHMY	8	Unmodified	_SEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MSMS	HCT116MG_D190212_S2	2	530.2376708984375	2	530.237458	1058.46036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.274	1	11.985	11.485	12.485	-0.28953								0	0	0	0.8837	1	4007	4007		2.5775	0	1				29677	2235	18764	18861	28560	28560					-0.06652817645158393
SEKHQHMY	8	Unmodified	_SEKHQHMY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.3173217773438	2	530.237458	1058.46036	0.46038	0.00024411	-0.10903	-5.7813E-05	0.35135	0.0001863	530.2373977297873	16.884	0.25997	16.543	16.36	16.62	-0.34183					7	4	2	0	0	0	0.25507	1	5693	5693		30.637	23.913	1	4700300			29678	2235	18764	18861	28561	28561					-0.06652817645158393
SEKIDSLQA	9	Unmodified	_SEKIDSLQA_					0	0	0		nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENSG00000127603|ENST00000564288|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	nc|ENSG00000127603|Q9UPN3-3|MACF1	MULTI-SECPEP	HCT116MG_D190212_S1	1	495.2202453613281	2	495.758746	989.50294	0.56519	0.0002802	-0.046945	-2.3273E-05	0.51825	0.00025693	495.75880806722506	29.105	0.20894	29.105	28.955	29.164	0					5	3	2	0	0	0	0.2336	1	10645	10645		17.113	5.4726	1	2242500			29679	2973	18765	18862	28562	28562					0.007768559640453532
SEKINKTSGP	10	Unmodified	_SEKINKTSGP_					0	0	0		ENSG00000187754|ENST00000298181|SSX7	ENSG00000187754|ENST00000298181|SSX7	ENSG00000187754|ENST00000298181|SSX7	MULTI-MSMS	HCT116MG_D190212_S3	3	530.7852783203125	2	530.785296	1059.55604	0.44978	0.00023874	-0.29456	-0.00015635	0.15522	8.239E-05	530.7849967175645	22.171	0.20825	22.172	22.042	22.25	0.00074577					5	3	2	0	0	0	0.75427	1	7795	7795		15.847	2.8047	1	2928000			29680	5957	18766	18863	28563	28563					0.028642337467545076
SEKINKTSGP	10	Unmodified	_SEKINKTSGP_					0	0	0		ENSG00000187754|ENST00000298181|SSX7	ENSG00000187754|ENST00000298181|SSX7	ENSG00000187754|ENST00000298181|SSX7	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	530.785296	1059.55604	0.38724	0.00020554	0.22637	0.00012016	0.61361	0.00032569	530.7853081925201	22.518	0.15586	22.287	22.192	22.348	-0.23105	0.05759	0.00037358	NaN	15.847	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1658600			29681	5957	18766	18863							0.028642337467545076
SEKKKEDP	8	Unmodified	_SEKKKEDP_					0	0	0		nc|ENSG00000091986|Q76M96-2|CCDC80;ENSG00000091986|ENST00000206423|CCDC80;CCDC80|p.G307C|1|0.24|ENSG00000091986|chr3:112638987-112638987|C/A|missense_variant	nc|ENSG00000091986|Q76M96-2|CCDC80	nc|ENSG00000091986|Q76M96-2|CCDC80	MSMS	HCT116MG_D190212_S3	3	480.7534484863281	2	480.753464	959.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.431	1	21.449	20.949	21.949	0.018446								0	0	0	0.85589	1	7468	7468		18.135	1.1927	1				29682	1569	18767	18864	28564	28564					0.011008733096218748
SEKKKKDKKKK	11	Unmodified	_SEKKKKDKKKK_					0	0	0			REV__ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	REV__ZNF609|p.P882Lfs*30|1|0.33|ENSG00000180357|chr15:64675495-64675495|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	687.94677734375	2	687.943193	1373.87183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.092	1	47.776	47.276	48.276	-0.31596								0	0	0	0.95636	1	18078	18078		2.9952	1.5133	1		+		29683	13660	18768	18865	28565	28565					0.19985232265162267
SEKLASYQA	9	Unmodified	_SEKLASYQA_					0	0	0		MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant	MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7536926269531	2	498.753464	995.492375	0.48606	0.00024242	-0.59946	-0.00029898	-0.1134	-5.6557E-05	498.75325396984164	25.849	0.31153	25.48	25.343	25.654	-0.36914					8	5	2	0	0	0	0.35128	1	9350	9350		25.399	9.5521	1	17816000			29684	3455	18769	18866	28566	28566					-0.0055512669038080276
SEKLASYQA	9	Unmodified	_SEKLASYQA_					0	0	0		MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant;nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant	MYC|p.A399Cfs*18|1|0.09|ENSG00000136997|chr8:127740832-127740833|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	499.23309326171875	2	498.753464	995.492375	0.51077	0.00025475	0.017115	8.536E-06	0.52788	0.00026328	498.7533050184229	25.648	0.2081	25.52	25.39	25.598	-0.12795					6	3	2	0	0	0	0.12796	1	9162	9162		59.368	30.287	1	5902200			29685	3455	18769	18866	28567	28567					-0.0055512669038080276
SEKLEQSEA	9	Unmodified	_SEKLEQSEA_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	510.74566650390625	2	510.745836	1019.47712	0.30711	0.00015685	0.31494	0.00016085	0.62204	0.00031771	510.74570630148514	18.584	0.2083	18.584	18.454	18.662	0					6	3	2	0	0	0	0.0040527	1	6402	6402		149.91	57.261	1	10956000			29686	2720	18770	18867	28568	28568					-0.03184038278220669
SEKLEQSEA	9	Unmodified	_SEKLEQSEA_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.7459716796875	2	510.745836	1019.47712	0.1925	9.8316E-05	0.50853	0.00025973	0.70102	0.00035804	510.7458522113413	19.075	0.57372	18.706	18.471	19.044	-0.3695					22	10	3	0	0	0	0.0059958	1	6594	6594		128.93	32.566	1	73149000			29687	2720	18770	18867	28569	28569					-0.03184038278220669
SEKLEQSEA	9	Unmodified	_SEKLEQSEA_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1020.4851684570312	1	1020.4844	1019.47712	0.6568	0.00067025	0.22189	0.00022644	0.87869	0.00089669	1020.4844056599128	19.075	0.20875	18.706	18.575	18.784	-0.3695					6	3	2	0	0	0	0.0064416	1	6621	6621		125.04	53.116	1	8960400			29688	2720	18770	18867	28570	28570					-0.03184038278220669
SEKLEQSEA	9	Unmodified	_SEKLEQSEA_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	510.745849609375	2	510.745836	1019.47712	0.12184	6.223E-05	0.097151	4.962E-05	0.21899	0.00011185	510.7457714204365	18.259	0.46902	18.335	18.153	18.622	0.076334					12	8	2	0	0	0	0.0034865	1	6191	6191		165.72	58.78	1	22435000			29689	2720	18770	18867	28571	28571					-0.03184038278220669
SEKLEQSEA	9	Unmodified	_SEKLEQSEA_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	510.74566650390625	2	510.745836	1019.47712	0.10705	5.4674E-05	0.53307	0.00027226	0.64012	0.00032694	510.74578592060834	18.528	0.20798	18.348	18.199	18.407	-0.18052					6	3	2	0	0	0	0.026999	1	6242	6242		89.401	13.64	1	3063200			29690	2720	18770	18867	28572	28572					-0.03184038278220669
SEKLEQSEA	9	Unmodified	_SEKLEQSEA_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1020.4844	1019.47712	0.58197	0.00059389	-0.53719	-0.00054819	0.044777	4.5695E-05	1020.4838573290533	18.259	0.15638	18.335	18.205	18.361	0.076334	-0.18531	-0.00048071	NaN	125.04	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1248000			29691	2720	18770	18867							-0.03184038278220669
SEKLLPTQ	8	Unmodified	_SEKLLPTQ_					0	0	0			REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	MSMS	HCT116MG_D190212_S4	4	458.26055908203125	2	458.260925	914.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.155	1	23.897	23.397	24.397	-0.25816								0	0	0	0.76512	1	8496	8496		25.399	4.9457	1		+		29692	17116	18771	18868	28573	28573					0.04662365177614447
SEKLRWISA	9	Unmodified	_SEKLRWISA_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	HCT116MG_D190212_S2	2	545.3065185546875	2	545.306198	1088.59784	0.39572	0.00021579	0.21553	0.00011753	0.61125	0.00033332	545.3063386345283	38.709	0.26208	38.624	38.492	38.754	-0.084618					7	4	2	0	0	0	0.32403	1	14573	14573		28.234	12.495	1	17898000			29693	1050	18772	18869	28574	28574					0.057088342259021374
SEKLRWISA	9	Unmodified	_SEKLRWISA_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MATCH	HCT116MG_D190212_S3	3		2	545.306198	1088.59784	0.37537	0.00020469	-0.2678	-0.00014604	0.10756	5.8654E-05	545.3059056026888	38.973	0.20769	38.671	38.508	38.716	-0.30137	0.023448	-0.00043106	NaN	28.234	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2656800			29694	1050	18772	18869							0.057088342259021374
SEKLYMTY	8	Oxidation (M)	_SEKLYM(Oxidation (M))TY_		SEKLYM(1)TY		SEKLYM(59)TY	0	0	1		tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	525.7449340820312	2	525.74425	1049.47395	0.50974	0.00026799	0.34846	0.0001832	0.8582	0.00045119	525.7445027857826	29.398	0.26062	29.176	29.046	29.306	-0.22195					9	4	3	0	0	0	0.30543	1	10701	10701		58.679	8.7458	1	7510000			29695	18656	18773	18870	28575	28575		168			-0.048810046565904486
SEKLYMTY	8	Oxidation (M)	_SEKLYM(Oxidation (M))TY_		SEKLYM(1)TY		SEKLYM(46)TY	0	0	1		tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	526.246826171875	2	525.74425	1049.47395	0.37258	0.00019588	0.33438	0.0001758	0.70696	0.00037168	525.7441841489464	29.549	0.20808	29.199	29.085	29.293	-0.34921					5	3	2	0	0	0	0.2158	1	10696	10696		45.7	7.524	1	3794400			29696	18656	18773	18870	28576	28576		168			-0.048810046565904486
SEKLYMTY	8	Unmodified	_SEKLYMTY_					0	0	0		tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	tr|U7T8P8|U7T8P8_FUSNUTranscriptionalregulatorOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00125PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	517.7470092773438	2	517.746793	1033.47903	0.33964	0.00017585	-0.062994	-3.2615E-05	0.27665	0.00014323	517.7468206227643	36.636	0.30886	36.251	36.074	36.383	-0.38486					12	5	3	0	0	0	0.26254	1	13423	13423		62.573	4.8507	1	8478600			29697	18656	18773	18871	28577	28577					-0.0363670079395888
SEKNEDFAA	9	Unmodified	_SEKNEDFAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	505.724853515625	2	505.724904	1009.43525	0.47845	0.00024196	-0.11843	-5.9891E-05	0.36003	0.00018207	505.7246943355052	24.281	0.26205	24.281	24.098	24.36	0					7	4	2	0	0	0	0.066823	1	8691	8691		66.457	35.82	1	10990000			29698	3119	18774	18872	28578	28578					-0.069085939667616
SEKNEDFAA	9	Unmodified	_SEKNEDFAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7250061035156	2	505.724904	1009.43525	0.46069	0.00023298	0.0010213	5.1652E-07	0.46172	0.0002335	505.7247962518851	24.75	0.46755	24.37	24.239	24.707	-0.38003					18	8	4	0	0	0	0.016744	1	8904	8904		99.755	66.97	1	82322000			29699	3119	18774	18872	28579	28579					-0.069085939667616
SEKNEDFAA	9	Unmodified	_SEKNEDFAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7252197265625	2	505.724904	1009.43525	0.18543	9.3775E-05	0.19275	9.7481E-05	0.37818	0.00019126	505.72489081241014	24.243	0.41618	24.181	23.947	24.363	-0.061449					15	7	3	0	0	0	0.0067688	1	8601	8601		122.18	73.833	1	19166000			29700	3119	18774	18872	28580	28580					-0.069085939667616
SEKNEDFAA	9	Unmodified	_SEKNEDFAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	505.7249450683594	2	505.724904	1009.43525	0.3986	0.00020158	-0.33104	-0.00016742	0.06756	3.4167E-05	505.7247675942933	24.584	0.2591	24.315	24.186	24.445	-0.26881					10	4	3	0	0	0	0.16306	1	8677	8677		45.7	20.3	1	4588900			29701	3119	18774	18872	28581	28581					-0.069085939667616
SEKPGSPEA	9	Unmodified	_SEKPGSPEA_					0	0	0		RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant;nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	451.2167663574219	2	451.216714	900.418876	0.052302	2.36E-05	-0.21907	-9.8846E-05	-0.16676	-7.5247E-05	451.2165605346475	16.2	0.26041	16.2	16.056	16.317	0					7	4	2	0	0	0	0.016412	1	5442	5442		100.09	32.01	1	3762000			29702	1035	18775	18873	28582	28582					-0.03531675132842338
SEKPGSPEA	9	Unmodified	_SEKPGSPEA_					0	0	0		RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant;nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	451.2165832519531	2	451.216714	900.418876	0.098021	4.4229E-05	-0.081146	-3.6614E-05	0.016875	7.6144E-06	451.2165521356479	16.468	0.41668	16.126	15.996	16.412	-0.34183					18	7	4	0	0	0	0.0082095	1	5544	5544		117.76	21.65	1	28435000			29703	1035	18775	18873	28583	28583					-0.03531675132842338
SEKPGSPEA	9	Unmodified	_SEKPGSPEA_					0	0	0		RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant;nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	901.4275512695312	1	901.426152	900.418876	0.88818	0.00080063	0.50965	0.00045941	1.3978	0.00126	901.4266676781599	16.481	0.26033	16.139	15.996	16.256	-0.34183					7	4	2	0	0	0	0.0034669	1	5557	5557		163.69	59.938	1	4509500			29704	1035	18775	18873	28584	28584					-0.03531675132842338
SEKPGSPEA	9	Unmodified	_SEKPGSPEA_					0	0	0		RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant;nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	RSF1|p.V664Sfs*11|1|0.19|ENSG00000048649|chr11:77701239-77701240|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	451.21685791015625	2	451.216714	900.418876	0.099938	4.5094E-05	0.17891	8.0726E-05	0.27885	0.00012582	451.2166662774913	15.516	0.26054	15.602	15.456	15.717	0.085424					6	4	2	0	0	0	0.14362	1	5100	5100		49.554	9.597	1	1472700			29705	1035	18775	18873	28585	28585					-0.03531675132842338
SEKPYILEA	9	Unmodified	_SEKPYILEA_					0	0	0		ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	ENSG00000102401|ENST00000471229|ARMCX3	MSMS	HCT116MG_D190212_S1	1	525.2791748046875	2	525.279315	1048.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.17	1	40.17	39.67	40.67	0								0	0	0	0.27468	1	15090	15090		41.956	3.9816	1				29706	1839	18776	18874	28586	28586					0.02174617003538515
SEKQFVVF	8	Unmodified	_SEKQFVVF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2629089355469	2	492.263468	982.512382	-0.084973	-4.1829E-05	-0.77509	-0.00038155	-0.86006	-0.00042338	492.2632619393371	49.875	0.3577	49.712	49.534	49.891	-0.16369					9	6	2	0	0	0	0.10976	1	19130	19130		92.822	22.107	1	36482000			29707	4645	18777	18875	28587	28587					0.02042669040247347
SEKQFVVF	8	Unmodified	_SEKQFVVF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	HCT116MG_D190212_S3	3	492.7437438964844	2	492.263468	982.512382	0.079434	3.9102E-05	-0.35774	-0.0001761	-0.27831	-0.000137	492.2634692767999	50.086	0.31232	49.771	49.654	49.967	-0.31524					6	5	2	0	0	0	0.27593	1	18847	18847		61.357	21.4	1	6065500			29708	4645	18777	18875	28588	28588					0.02042669040247347
SEKQLAEY	8	Unmodified	_SEKQLAEY_					0	0	0			REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.2399597167969	2	484.24019	966.465826	0.090392	4.3772E-05	-0.64816	-0.00031386	-0.55776	-0.00027009	484.2398041450705	26.619	0.25948	26.258	26.128	26.387	-0.36164					6	4	2	0	0	0	0.7524	1	9665	9665		16.942	0	1	10536000	+		29709	12975	18778	18876	28589	28589					-0.01874815581720668
SEKQLAEY	8	Unmodified	_SEKQLAEY_					0	0	0			REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	484.24019	966.465826	0.090392	4.3772E-05	-0.64816	-0.00031386	-0.55776	-0.00027009	484.2398041450705	26.619	0.25948	26.258	26.128	26.387	-0.36164	0	0	NaN	16.942	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10536000	+		29710	12975	18778	18876							-0.01874815581720668
SEKQRWISA	9	Unmodified	_SEKQRWISA_					0	0	0		ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-MSMS	HCT116MG_D190212_S1	1	552.7938842773438	2	552.793455	1103.57236	0.75928	0.00041972	-1.0554	-0.00058342	-0.29613	-0.0001637	552.7933081331789	28.713	0.47589	28.713	28.375	28.851	0					13	8	3	0	0	0	0.23993	1	10496	10496		37.075	2.6729	1	13190000			29711	3768	18779	18877	28590	28590					0.024713597034860868
SEKQRWISA	9	Unmodified	_SEKQRWISA_					0	0	0		ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-MSMS	HCT116MG_D190212_S2	2	552.79345703125	2	552.793455	1103.57236	0.45064	0.00024911	-0.038069	-2.1044E-05	0.41258	0.00022807	552.7934210561772	29.255	0.35838	28.939	28.812	29.17	-0.31613					15	6	4	0	0	0	0.0034297	1	10715	10715		159.1	101.38	1	103390000			29712	3768	18779	18877	28591	28591					0.024713597034860868
SEKQRWISA	9	Unmodified	_SEKQRWISA_					0	0	0		ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-MSMS	HCT116MG_D190212_S2	2	368.8644104003906	3	368.864729	1103.57236	-0.11796	-4.3513E-05	-0.34668	-0.00012788	-0.46465	-0.00017139	368.8646132835965	29.259	0.25529	28.943	28.812	29.067	-0.31613					9	4	3	0	0	0	0.58135	1	10738	10738		8.4443	3.0416	1	26938000			29713	3768	18779	18877	28592	28592					0.024713597034860868
SEKQRWISA	9	Unmodified	_SEKQRWISA_					0	0	0		ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7933959960938	2	552.793455	1103.57236	0.52328	0.00028926	-0.22861	-0.00012637	0.29467	0.00016289	552.7933215141945	29.19	0.31216	28.968	28.838	29.15	-0.22195					15	5	4	0	0	0	0.043159	1	10599	10599		78.06	26.645	1	30829000			29714	3768	18779	18877	28593	28593					0.024713597034860868
SEKQRWISA	9	Unmodified	_SEKQRWISA_					0	0	0		ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-MSMS	HCT116MG_D190212_S3	3	368.86456298828125	3	368.864729	1103.57236	0.029418	1.0851E-05	-0.34827	-0.00012846	-0.31885	-0.00011761	368.8645598708559	29.207	0.26008	28.985	28.838	29.098	-0.22196					7	4	2	0	0	0	0.43843	1	10619	10619		14.957	14.957	1	9325400			29715	3768	18779	18877	28594	28594					0.024713597034860868
SEKQRWISA	9	Unmodified	_SEKQRWISA_					0	0	0		ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-MSMS	HCT116MG_D190212_S4	4	552.7933959960938	2	552.793455	1103.57236	0.45223	0.00024999	0.10304	5.6961E-05	0.55528	0.00030695	552.7933733469312	29.408	0.3119	29.059	28.929	29.241	-0.34921					13	5	3	0	0	0	0.048237	1	10629	10629		75.571	42.785	1	8776400			29716	3768	18779	18877	28595	28595					0.024713597034860868
SEKQRWISA	9	Unmodified	_SEKQRWISA_					0	0	0		ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	368.864729	1103.57236	-0.11796	-4.3513E-05	-0.34668	-0.00012788	-0.46465	-0.00017139	368.8646132835965	29.259	0.25529	28.943	28.812	29.067	-0.31613	-0.021388	7.9842E-07	NaN	14.957	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26938000			29717	3768	18779	18877							0.024713597034860868
SEKQRWISA	9	Unmodified	_SEKQRWISA_					0	0	0		ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	368.864729	1103.57236	0.029418	1.0851E-05	-0.34827	-0.00012846	-0.31885	-0.00011761	368.8645598708559	29.207	0.26008	28.985	28.838	29.098	-0.22196	0.021388	-9.5339E-07	NaN	14.957	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9325400			29718	3768	18779	18877							0.024713597034860868
SEKREKKP	8	Unmodified	_SEKREKKP_					0	0	0		ENST00000262662.5_1_1:51434456-51434999:+|nuORF	ENST00000262662.5_1_1:51434456-51434999:+|nuORF	ENST00000262662.5_1_1:51434456-51434999:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	500.7752685546875	2	501.290548	1000.56654	0.43646	0.00021879	0.048882	2.4504E-05	0.48534	0.0002433	501.29048379636833	28.074	0.36271	27.744	27.563	27.926	-0.32987					14	6	3	0	0	0	0.3238	1	10154	10154		10.183	0	1	79908000			29719	6869	18780	18878	28596	28596					0.06628261191804086
SEKREKKP	8	Unmodified	_SEKREKKP_					0	0	0		ENST00000262662.5_1_1:51434456-51434999:+|nuORF	ENST00000262662.5_1_1:51434456-51434999:+|nuORF	ENST00000262662.5_1_1:51434456-51434999:+|nuORF	MSMS	HCT116MG_D190212_S4	4	501.29046630859375	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.907	1	45.535	45.035	46.035	-0.37206								0	0	0	0.8837	1	16951	16951		5.2307	0	1				29720	6869	18780	18878	28597	28597					0.06628261191804086
SEKRMMEIA	9	Unmodified	_SEKRMMEIA_					0	0	0		ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	547.7710571289062	2	547.770277	1093.526	0.59837	0.00032777	-0.30202	-0.00016544	0.29635	0.00016233	547.7702021797207	29.978	0.26649	29.742	29.555	29.822	-0.23655					7	4	2	0	0	0	0.16285	1	10915	10915		45.74	3.9002	1	12299000			29721	3457	18781	18879	28598	28598					-0.017021645144723152
SEKRMMEIA	9	Unmodified	_SEKRMMEIA_					0	0	0		ENST00000442009.6_1_9:37489340-37503196:+|nuORF;ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	ENST00000442009.6_1_9:37489340-37503196:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	547.77099609375	2	547.770277	1093.526	0.50338	0.00027574	0.4971	0.0002723	1.0005	0.00054804	547.7706328209572	30.188	0.20802	29.831	29.701	29.909	-0.3571					6	3	2	0	0	0	0.26031	1	10964	10964		34.932	6.4376	1	4151700			29722	3457	18781	18879	28599	28599					-0.017021645144723152
SEKRMWTTV	9	Unmodified	_SEKRMWTTV_					0	0	0		RAET1L|p.D152H|1|0.17|ENSG00000155918|chr6:150021082-150021082|C/G|missense_variant;ENSG00000155918|ENST00000367341|RAET1L;ENSG00000131015|ENST00000367351|ULBP2	RAET1L|p.D152H|1|0.17|ENSG00000155918|chr6:150021082-150021082|C/G|missense_variant	RAET1L|p.D152H|1|0.17|ENSG00000155918|chr6:150021082-150021082|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	569.2900390625	2	569.289691	1136.56483	0.51344	0.0002923	-1.1101	-0.00063196	-0.59665	-0.00033967	569.2888951899743	33.806	0.26012	33.613	33.482	33.742	-0.19297					5	4	2	0	0	0	0.17622	1	12566	12566		43.772	14.691	1	17887000			29723	3118	18782	18880	28600	28600					0.0020088411154119967
SEKSGFSSP	9	Unmodified	_SEKSGFSSP_					0	0	0		nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	MSMS	HCT116MG_D190212_S2	2	463.2164306640625	2	463.216714	924.418876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.593	1	23.21	22.71	23.71	-0.38324								0	0	0	0.76575	1	8416	8416		15.847	3.3156	1				29724	4532	18783	18881	28601	28601					-0.04635675132851702
SEKSGFSSP	9	Unmodified	_SEKSGFSSP_					0	0	0		nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	MULTI-MSMS	HCT116MG_D190212_S3	3	463.2170104980469	2	463.216714	924.418876	0.27619	0.00012794	0.93281	0.00043209	1.209	0.00056003	463.2167390595857	22.955	0.6645	22.936	22.491	23.156	-0.018869					24	12	3	0	0	0	0.17622	1	8023	8023		43.772	11.467	1	9379900			29725	4532	18783	18881	28602	28602					-0.04635675132851702
SEKSGFSSP	9	Unmodified	_SEKSGFSSP_					0	0	0		nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	nc|ENSG00000162599|Q12857-2|NFIA	MULTI-MSMS	HCT116MG_D190212_S4	4	463.2159118652344	2	463.216714	924.418876	-0.16141	-7.4768E-05	0.68975	0.0003195	0.52834	0.00024473	463.2166894933086	23.21	0.41955	22.962	22.8	23.22	-0.24775					14	7	3	0	0	0	0.21258	1	8128	8128		39.95	7.6442	1	2709200			29726	4532	18783	18881	28603	28603					-0.04635675132851702
SEKSGMLQA	9	Unmodified	_SEKSGMLQA_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S2	2	475.7342224121094	2	475.734217	949.453881	0.4905	0.00023335	-0.017974	-8.5506E-06	0.47252	0.0002248	475.7341541282988	27.301	0.41435	26.949	26.766	27.18	-0.35254					10	7	2	0	0	0	0.012531	1	9913	9913		107.1	25.487	1	32858000			29727	1027;18285	18784	18882	28604	28604					-0.022867555965490283
SEKSGMLQA	9	Unmodified	_SEKSGMLQA_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S3	3	475.734130859375	2	475.734217	949.453881	0.23999	0.00011417	0.055	2.6166E-05	0.29499	0.00014034	475.73412969295225	27.051	0.41675	26.882	26.703	27.12	-0.16933					16	7	3	0	0	0	0.0059958	1	9717	9717		128.93	40.029	1	43381000			29728	1027;18285	18784	18882	28605	28605					-0.022867555965490283
SEKSGMLQA	9	Unmodified	_SEKSGMLQA_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.P2083Qfs*3|1|0.31|ENSG00000047410|chr1:186323735-186323735|G/-|frameshift_variant;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR;TPR|p.T2133Lfs*63|1|0.03|ENSG00000047410|chr1:186322382-186322383|-/GTACTAATAAG|frameshift_variant	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	HCT116MG_D190212_S4	4	475.7342529296875	2	475.734217	949.453881	0.5614	0.00026708	-0.30048	-0.00014295	0.26093	0.00012413	475.7340485701645	27.288	0.36361	26.976	26.794	27.158	-0.3114					12	6	2	0	0	0	0.029121	1	9764	9764		87.258	25.901	1	13017000			29729	1027;18285	18784	18882	28606	28606					-0.022867555965490283
SEKSIRITA	9	Unmodified	_SEKSIRITA_					0	0	0		ENST00000586344.5_1_19:5917623-5933521:-|nuORF;nc|ENSG00000031823|Q9H6Z4-3|RANBP3;ENST00000592771.5_1_19:5917623-5941693:-|nuORF;nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3	ENST00000586344.5_1_19:5917623-5933521:-|nuORF	ENST00000586344.5_1_19:5917623-5933521:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	502.79083251953125	2	502.790381	1003.56621	0.48502	0.00024386	0.10534	5.2964E-05	0.59036	0.00029683	502.79037594122957	26.366	0.25781	26.004	25.818	26.076	-0.36164					9	4	3	0	0	0	0.018739	1	9541	9541		97.741	52.041	1	14837000			29730	968	18785	18883	28607	28607					0.06456841471936059
SEKTTMPLW	9	Oxidation (M)	_SEKTTM(Oxidation (M))PLW_		SEKTTM(1)PLW		SEKTTM(50)PLW	0	0	1		CON__P02662	CON__P02662	CON__P02662	MULTI-SECPEP	HCT116MG_D190212_S3	3	554.78759765625	2	554.7708	1107.52705	0.37918	0.00021036	-0.91411	-0.00050712	-0.53493	-0.00029676	554.7702523570562	42.023	0.31186	41.721	41.572	41.884	-0.30257					9	5	2	0	0	0	0.14889	1	15684	15684		49.933	23.049	1	10602000		+	29731	548	18786	18884	28608	28608		13			-0.022416268739334555
SEKTTMPLW	9	Oxidation (M)	_SEKTTM(Oxidation (M))PLW_		SEKTTM(1)PLW		SEKTTM(80)PLW	0	0	1		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S4	4	554.7880859375	2	554.7708	1107.52705	0.4132	0.00022923	-0.39466	-0.00021895	0.018536	1.0283E-05	554.7704653958097	42.137	0.36117	41.761	41.581	41.942	-0.37565					14	6	3	0	0	0	0.040027	2	15474	15437;15474		79.596	48.96	1	10079000		+	29732	548	18786	18884	28609;28610	28610		13			-0.022416268739334555
SEKTTMPLW	9	Oxidation (M)	_SEKTTM(Oxidation (M))PLW_					0	0	1		CON__P02662	CON__P02662	CON__P02662	MULTI-MATCH	HCT116MG_D190212_S2	2		2	554.7708	1107.52705	0.45452	0.00025216	-0.33913	-0.00018814	0.1154	6.4019E-05	554.7709594220087	41.715	0.2075	41.646	41.549	41.756	-0.068195	-0.062939	0.00014923	NaN	79.596	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5102900		+	29733	548	18786	18884				13			-0.022416268739334555
SEKTTMPLW	9	Unmodified	_SEKTTMPLW_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MSMS	HCT116MG_D190212_S4	4	546.7743530273438	2	546.773342	1091.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.117	1	49.758	49.258	50.258	-0.35878								0	0	0	0.76694	1	18610	18610		11.64	1.4569	1			+	29734	548	18786	18885	28611	28611					-0.009973230113246245
SELAGLLSA	9	Unmodified	_SELAGLLSA_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;STAT3|p.R729Afs*3|2|0.33|ENSG00000168610|chr17:42316861-42316861|G/-|frameshift_variant;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	HCT116MG_D190212_S4	4	860.4722900390625	1	860.472374	859.465098	0.79046	0.00068017	-0.49701	-0.00042767	0.29344	0.0002525	860.4719758418036	53.864	0.20802	53.535	53.405	53.613	-0.32923					5	3	2	0	0	0	0.035914	1	20143	20143		81.613	0	1	1869300			29735	5022	18787	18886	28612	28612					0.02974389769235586
SELARLRAP	9	Unmodified	_SELARLRAP_					0	0	0			REV__nc|ENSG00000121390|Q8WXF1-2|PSPC1	REV__nc|ENSG00000121390|Q8WXF1-2|PSPC1	MSMS	HCT116MG_D190212_S2	2	506.7986755371094	2	506.79854	1011.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.21	1	18.841	18.341	19.341	-0.3695								0	0	0	0.76781	1	6648	6648		8.5933	0	1		+		29736	11716	18788	18887	28613	28613					0.0771996742871579
SELDADHPG	9	Unmodified	_SELDADHPG_					0	0	0		TPH1|p.P162Qfs*8|1|0.12|ENSG00000129167|chr11:18029347-18029348|-/CTTTCTAAATATT|frameshift_variant;ENSG00000129167|ENST00000682019|TPH1;nc|ENSG00000129167|P17752-2|TPH1;TPH2|p.Y450Tfs*8|1|0.07|ENSG00000139287|chr12:72031567-72031567|C/-|frameshift_variant;ENSG00000139287|ENST00000333850|TPH2;nc|ENSG00000139287|Q8IWU9-2|TPH2	TPH1|p.P162Qfs*8|1|0.12|ENSG00000129167|chr11:18029347-18029348|-/CTTTCTAAATATT|frameshift_variant	TPH1|p.P162Qfs*8|1|0.12|ENSG00000129167|chr11:18029347-18029348|-/CTTTCTAAATATT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	940.3999633789062	1	940.400666	939.393389	0.53785	0.0005058	-0.8111	-0.00076276	-0.27325	-0.00025696	940.3990916454889	15.56	0.26054	15.646	15.508	15.769	0.085424					9	4	3	0	0	0	0.57626	1	5129	5129		12.532	1.7076	1	2058800			29737	3021	18789	18888	28614	28614					-0.07873149655279121
SELEFNLETM	10	Unmodified	_SELEFNLETM_					0	0	0		TIE1|p.R648Dfs*15|1|0.25|ENSG00000066056|chr1:43313144-43313144|C/-|frameshift_variant;TIE1|p.F1100Lfs*8|1|0.5|ENSG00000066056|chr1:43321662-43321662|C/-|frameshift_variant;ENSG00000066056|ENST00000372476|TIE1	TIE1|p.R648Dfs*15|1|0.25|ENSG00000066056|chr1:43313144-43313144|C/-|frameshift_variant	TIE1|p.R648Dfs*15|1|0.25|ENSG00000066056|chr1:43313144-43313144|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	606.7779541015625	2	606.776279	1211.538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.122	1	39.82	39.32	40.32	-0.30137								0	0	0	0.93202	1	14885	14885		8.7454	0.58988	1				29738	1167	18790	18889	28615	28615					-0.05930269290297474
SELEGSVL	8	Unmodified	_SELEGSVL_					0	0	0			REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	833.428466796875	1	833.42509	832.417813	0.80411	0.00067016	0.60881	0.0005074	1.4129	0.0011776	833.4258367041854	39.199	0.26595	38.898	38.768	39.034	-0.30137					6	4	2	0	0	0	0.32897	1	14587	14587		56.541	0	1	2931700	+		29739	13968	18791	18890	28616	28616					-0.005098895017454197
SELEGSVL	8	Unmodified	_SELEGSVL_					0	0	0			REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	833.42509	832.417813	0.85912	0.00071601	0.72278	0.00060238	1.5819	0.0013184	833.4249400617242	38.967	0.15512	38.883	38.806	38.961	-0.084618	-0.0075908	4.8939E-05	NaN	56.541	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12113000	+		29740	13968	18791	18890							-0.005098895017454197
SELEGSVL	8	Unmodified	_SELEGSVL_					0	0	0			REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	833.42509	832.417813	0.80411	0.00067016	0.60881	0.0005074	1.4129	0.0011776	833.4258367041854	39.199	0.26595	38.898	38.768	39.034	-0.30137	0.0075908	-4.6039E-05	NaN	56.541	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2931700	+		29741	13968	18791	18890							-0.005098895017454197
SELERLIVP	9	Unmodified	_SELERLIVP_					0	0	0		ENSG00000171223|ENST00000302754|JUNB;JUNB|p.G126Afs*24|1|0.32|ENSG00000171223|chr19:12792144-12792144|G/-|frameshift_variant;JUNB|p.G115Vfs*35|2|0.33|ENSG00000171223|chr19:12792111-12792111|G/-|frameshift_variant	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	HCT116MG_D190212_S1	1	528.3085327148438	2	528.308406	1054.60226	0.15062	7.9573E-05	0.72774	0.00038447	0.87836	0.00046404	528.3086254008115	50.313	0.30949	50.313	50.162	50.472	0					10	5	3	0	0	0	0.0068427	1	19197	19197		121.53	25.423	1	29503000			29742	5182	18792	18891	28617	28617					0.07714298648784279
SELERLIVP	9	Unmodified	_SELERLIVP_					0	0	0		ENSG00000171223|ENST00000302754|JUNB;JUNB|p.G126Afs*24|1|0.32|ENSG00000171223|chr19:12792144-12792144|G/-|frameshift_variant;JUNB|p.G115Vfs*35|2|0.33|ENSG00000171223|chr19:12792111-12792111|G/-|frameshift_variant	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	HCT116MG_D190212_S2	2	528.3088989257812	2	528.308406	1054.60226	0.49638	0.00026224	-0.49502	-0.00026152	0.0013541	7.1538E-07	528.30813283404	50.436	0.36715	50.264	50.036	50.403	-0.1719					17	6	3	0	0	0	0.1535	1	19375	19375		47.594	20.711	1	117110000			29743	5182	18792	18891	28618	28618					0.07714298648784279
SELERLIVP	9	Unmodified	_SELERLIVP_					0	0	0		ENSG00000171223|ENST00000302754|JUNB;JUNB|p.G126Afs*24|1|0.32|ENSG00000171223|chr19:12792144-12792144|G/-|frameshift_variant;JUNB|p.G115Vfs*35|2|0.33|ENSG00000171223|chr19:12792111-12792111|G/-|frameshift_variant	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	HCT116MG_D190212_S4	4	528.8099365234375	2	528.308406	1054.60226	0.3695	0.00019521	-0.45205	-0.00023882	-0.08255	-4.3612E-05	528.3082039324114	50.678	0.30942	50.323	50.161	50.47	-0.35483					7	5	2	0	0	0	0.26031	1	18854	18854		34.932	7.7088	1	7201800			29744	5182	18792	18891	28619	28619					0.07714298648784279
SELERLIVP	9	Unmodified	_SELERLIVP_					0	0	0		ENSG00000171223|ENST00000302754|JUNB;JUNB|p.G126Afs*24|1|0.32|ENSG00000171223|chr19:12792144-12792144|G/-|frameshift_variant;JUNB|p.G115Vfs*35|2|0.33|ENSG00000171223|chr19:12792111-12792111|G/-|frameshift_variant	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	528.308406	1054.60226	0.3681	0.00019447	0.055933	2.955E-05	0.42403	0.00022402	528.3082565059507	50.669	0.31249	50.355	50.177	50.49	-0.31381	0.041156	9.4863E-05	NaN	121.53	15	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24254000			29745	5182	18792	18891							0.07714298648784279
SELERSQQA	9	Unmodified	_SELERSQQA_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.S2957Afs*6|1|0.52|ENSG00000117724|chr1:214657310-214657310|A/-|frameshift_variant;CENPF|p.I148Ffs*6|1|0.35|ENSG00000117724|chr1:214618650-214618650|A/-|frameshift_variant;CENPF|p.T1974Pfs*11|1|0.22|ENSG00000117724|chr1:214645483-214645483|A/-|frameshift_variant;CENPF|p.T2189Hfs*3|1|0.28|ENSG00000117724|chr1:214646131-214646131|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MSMS	HCT116MG_D190212_S3	3	524.2568969726562	2	524.256902	1046.49925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.292	1	17.375	16.875	17.875	0.083166								0	0	0	0.30238	1	5799	5799		39.95	3.8227	1				29746	2586	18793	18892	28620	28620					-0.022138138098171112
SELGHVGSY	9	Unmodified	_SELGHVGSY_					0	0	0		ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	MULTI-MSMS	HCT116MG_D190212_S1	1	474.72479248046875	2	474.724707	947.43486	0.24831	0.00011788	0.34933	0.00016584	0.59764	0.00028372	474.72467004898044	31.727	0.46898	31.727	31.388	31.857	0					13	8	2	0	0	0	0.13706	1	11673	11673		50.855	14.811	1	10122000			29747	1869	18794	18893	28621	28621					-0.040959688959446794
SELGHVGSY	9	Unmodified	_SELGHVGSY_					0	0	0		ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	MULTI-MSMS	HCT116MG_D190212_S2	2	474.72479248046875	2	474.724707	947.43486	0.42503	0.00020177	0.28642	0.00013597	0.71144	0.00033774	474.72483914460656	31.869	0.72586	31.62	31.302	32.028	-0.24883					21	13	2	0	0	0	0.32162	1	11781	11781		28.487	1.6032	1	42975000			29748	1869	18794	18893	28622	28622					-0.040959688959446794
SELGHVGSY	9	Unmodified	_SELGHVGSY_					0	0	0		ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	MULTI-MSMS	HCT116MG_D190212_S3	3	474.724853515625	2	474.724707	947.43486	0.095745	4.5453E-05	0.55905	0.00026539	0.65479	0.00031085	474.72488991221854	32.004	0.572	31.725	31.474	32.046	-0.27841					22	10	3	0	0	0	0.13706	1	11728	11728		50.855	6.448	1	29228000			29749	1869	18794	18893	28623	28623					-0.040959688959446794
SELGPKIKH	9	Unmodified	_SELGPKIKH_					0	0	0		ENST00000355312.7_1_12:110367795-110368041:-|nuORF	ENST00000355312.7_1_12:110367795-110368041:-|nuORF	ENST00000355312.7_1_12:110367795-110368041:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	504.79571533203125	2	504.795466	1007.57638	0.22875	0.00011547	0.11629	5.8701E-05	0.34504	0.00017418	504.79543507285985	25.232	0.20882	25.232	25.092	25.301	0					6	3	2	0	0	0	0.47829	1	9087	9087		18.135	2.2878	1	7603600			29750	7291	18795	18894	28624	28624					0.07289449197173781
SELHPLTP	8	Unmodified	_SELHPLTP_					0	0	0			REV__ENST00000505276.2_1_12:3406750-3406963:-|nuORF	REV__ENST00000505276.2_1_12:3406750-3406963:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	447.2399597167969	2	447.239993	892.465432	0.15643	6.9962E-05	0.04793	2.1436E-05	0.20436	9.1398E-05	447.24001832208745	45.323	0.30974	45.23	45.101	45.411	-0.092472					8	5	2	0	0	0	0.46267	1	17256	17256		44.407	6.2558	1	24813000	+		29751	16137	18796	18895	28625	28625					0.01489809489100935
SELHQDQP	8	Unmodified	_SELHQDQP_					0	0	0		nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3	nc|ENSG00000133318|O95197-7|RTN3	nc|ENSG00000133318|O95197-7|RTN3	MULTI-MSMS	HCT116MG_D190212_S4	4	477.2200012207031	2	477.219788	952.425024	0.11162	5.3267E-05	-0.081258	-3.8778E-05	0.030361	1.4489E-05	477.2197494394812	17.317	0.25741	17.147	16.967	17.225	-0.17047					6	4	2	0	0	0	0.81821	1	5766	5766		9.3474	1.4373	1	872430			29752	3237	18797	18896	28626	28626					-0.05309156901330425
SELITKAVA	9	Unmodified	_SELITKAVA_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MSMS	HCT116MG_D190212_S3	3	466.2767028808594	2	466.276575	930.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.959	1	32.674	32.174	33.174	-0.28511								0	0	0	0.44802	1	12099	12099		31.268	8.5321	1				29753	2853	18798	18897	28627	28627					0.07054938211717854
SELIVHIF	8	Unmodified	_SELIVHIF_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	HCT116MG_D190212_S2	2	479.27374267578125	2	479.273835	956.533118	0.26319	0.00012614	0.30787	0.00014755	0.57107	0.0002737	479.2739891120626	55.704	0.15543	55.519	55.431	55.587	-0.18565					6	2	3	0	0	0	0.55314	1	21505	21505		36.466	0	1	15488000			29754	4768	18799	18898	28628	28628					0.0531125941990922
SELIVHIF	8	Unmodified	_SELIVHIF_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MSMS	HCT116MG_D190212_S3	3	479.2740478515625	2	479.273835	956.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.866	1	55.578	55.078	56.078	-0.28773								0	0	0	0.6191	1	21196	21196		36.466	0	1				29755	4768	18799	18898	28629	28629					0.0531125941990922
SELKDLEGEI	10	Unmodified	_SELKDLEGEI_					0	0	0			REV__ENST00000447956.5_1_20:2187981-2193678:+|nuORF	REV__ENST00000447956.5_1_20:2187981-2193678:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	377.8606262207031	3	378.195921	1131.56593	-0.21142	-7.9958E-05	-1.6059	-0.00060736	-1.8174	-0.00068732	378.1954247851791	19.896	0.3103	19.521	19.403	19.713	-0.37503					6	5	2	0	0	0	0.30126	1	6932	6932		7.4771	3.3604	1	5281100	+		29756	15691	18800	18899	28630	28630					0.005413769614278863
SELKFNEY	8	Unmodified	_SELKFNEY_					0	0	0		ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2479858398438	2	515.248015	1028.48148	-0.3495	-0.00018008	-0.067935	-3.5004E-05	-0.41743	-0.00021508	515.2479154700334	38.41	0.31293	38.41	38.279	38.592	0					9	5	2	0	0	0	0.12671	1	14423	14423		88.954	17.82	1	29335000			29757	6025	18801	18900	28631	28631					-0.03162529064661612
SELKFNEY	8	Unmodified	_SELKFNEY_					0	0	0		ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2481689453125	2	515.248015	1028.48148	0.16207	8.3508E-05	0.42823	0.00022064	0.5903	0.00030415	515.2481151692334	38.441	0.36915	38.348	38.167	38.536	-0.09301					13	6	3	0	0	0	0.1105	1	14485	14485		92.653	17.724	1	154740000			29758	6025	18801	18900	28632	28632					-0.03162529064661612
SELKFNEY	8	Unmodified	_SELKFNEY_					0	0	0		ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2481689453125	2	515.248015	1028.48148	0.087265	4.4963E-05	1.0354	0.00053349	1.1227	0.00057845	515.2485977588439	38.68	0.624	38.378	37.989	38.613	-0.30137					20	11	3	0	0	0	0.0017066	1	14358	14358		179.17	63.482	1	41685000			29759	6025	18801	18900	28633	28633					-0.03162529064661612
SELKFNEY	8	Unmodified	_SELKFNEY_					0	0	0		ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	ENSG00000189171|ENST00000476133|S100A13	MULTI-MSMS	HCT116MG_D190212_S4	4	515.2481689453125	2	515.248015	1028.48148	0.16626	8.5663E-05	0.47121	0.00024279	0.63747	0.00032845	515.248197692304	38.795	0.40342	38.414	38.187	38.591	-0.38163					13	7	3	0	0	0	0.19352	1	14272	14272		74.929	13.572	1	12780000			29760	6025	18801	18900	28634	28634					-0.03162529064661612
SELKGKIIIKS	11	Unmodified	_SELKGKIIIKS_					0	0	0			REV__tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1	REV__tr|U7SWJ0|U7SWJ0_FUSNU3-phosphoshikimate1-carboxyvinyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=aroAPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	608.3857421875	2	608.387188	1214.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.766	1	44.766	44.266	45.266	0								0	0	0	0.91257	1	16943	16943		18.373	6.1324	1		+		29761	17852	18802	18901	28635	28635					0.16103378188199713
SELLIHVF	8	Unmodified	_SELLIHVF_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI;PRKCI|p.T276Nfs*16|1|0.35|ENSG00000163558|chr3:170280339-170280340|-/A|frameshift_variant;ENST00000392722.3_1_X:100793789-100794143:-|nuORF	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	HCT116MG_D190212_S4	4	479.27410888671875	2	479.273835	956.533118	0.50359	0.00024136	0.14095	6.7556E-05	0.64455	0.00030892	479.2738711653914	55.792	0.15624	55.48	55.402	55.558	-0.312					4	2	2	0	0	0	0.44783	1	20925	20925		45.75	9.2838	1	4676300			29762	4609	18803	18902	28636	28636					0.05311259419897851
SELLIHVF	8	Unmodified	_SELLIHVF_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI;PRKCI|p.T276Nfs*16|1|0.35|ENSG00000163558|chr3:170280339-170280340|-/A|frameshift_variant;ENST00000392722.3_1_X:100793789-100794143:-|nuORF	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MATCH	HCT116MG_D190212_S3	3		2	479.273835	956.533118	0.28781	0.00013794	-0.12001	-5.7516E-05	0.16781	8.0425E-05	479.27377399838537	55.832	0.15933	55.544	55.411	55.571	-0.28773	0.030078	-0.00022873	NaN	45.75	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4638600			29763	4609	18803	18902							0.05311259419897851
SELLMVSAP	9	Unmodified	_SELLMVSAP_					0	0	0		NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant;ENSG00000113569|ENST00000231498|NUP155	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	NUP155|p.N477Tfs*7|1|0.25|ENSG00000113569|chr5:37333551-37333551|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	473.7510070800781	2	473.749336	945.484119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.918	1	19.966	19.466	20.466	0.048107								0	0	0	0.64498	1	6859	6859		21.747	3.6117	1				29764	2394	18804	18903	28637	28637					0.009196030686439371
SELPAPPAA	9	Unmodified	_SELPAPPAA_					0	0	0		ENST00000584717.1_1_17:80059560-80064242:-|nuORF	ENST00000584717.1_1_17:80059560-80064242:-|nuORF	ENST00000584717.1_1_17:80059560-80064242:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	852.4462280273438	1	852.44616	851.438883	0.52398	0.00044667	-0.21866	-0.0001864	0.30532	0.00026027	852.4459508009869	34.738	0.41607	34.441	34.284	34.7	-0.29707					11	7	2	0	0	0	0.0093514	1	12826	12826		114.94	29.672	1	3077100			29765	8979	18805	18904	28638	28638					0.007221205977543832
SELPGAFEA	9	Unmodified	_SELPGAFEA_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	HCT116MG_D190212_S1	1	920.4364624023438	1	920.435989	919.428712	0.81459	0.00074978	0.17122	0.00015759	0.9858	0.00090737	920.4361455582939	44.511	0.58122	44.511	44.195	44.777	0					13	10	2	0	0	0	0.016134	1	16842	16842		100.37	35.136	1	7254800			29766	2930	18806	18905	28639	28639					-0.03422487127477325
SELPGAFEA	9	Unmodified	_SELPGAFEA_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	HCT116MG_D190212_S2	2	920.4367065429688	1	920.435989	919.428712	0.97667	0.00089896	-0.27381	-0.00025203	0.70285	0.00064693	920.4355461581687	44.58	0.78397	44.495	44.115	44.899	-0.084797					32	14	3	0	0	0	0.0054498	1	16893	16893		133.7	58.773	1	60901000			29767	2930	18806	18905	28640	28640					-0.03422487127477325
SELPGAFEA	9	Unmodified	_SELPGAFEA_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-MSMS	HCT116MG_D190212_S3	3	920.4356689453125	1	920.435989	919.428712	1.037	0.00095454	-0.039826	-3.6657E-05	0.99722	0.00091788	920.4356021259296	44.806	0.71626	44.497	44.225	44.941	-0.30927					35	17	3	0	0	0	0.012168	1	16690	16690		108	45.424	1	13999000			29768	2930	18806	18905	28641	28641					-0.03422487127477325
SELPTTVTV	9	Unmodified	_SELPTTVTV_					0	0	0		nc|ENSG00000106459|Q16656-3|NRF1;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	MULTI-MSMS	HCT116MG_D190212_S2	2	946.509521484375	1	946.509154	945.501877	0.17494	0.00016558	0.14468	0.00013694	0.31962	0.00030252	946.5093294600915	43.196	0.3088	43.123	42.943	43.252	-0.073376					9	5	2	0	0	0	0.027492	1	16373	16373		88.904	7.2905	1	60201000			29769	2080	18807	18906	28642	28642					0.02694641595144276
SELPTTVTV	9	Unmodified	_SELPTTVTV_					0	0	0		nc|ENSG00000106459|Q16656-3|NRF1;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	MULTI-MSMS	HCT116MG_D190212_S3	3	946.509765625	1	946.509154	945.501877	0.76692	0.0007259	-0.10538	-9.9747E-05	0.66154	0.00062615	946.5088567587923	43.364	0.2961	43.059	42.945	43.241	-0.30472					8	5	2	0	0	0	0.016134	1	16183	16183		100.37	7.5494	1	13950000			29770	2080	18807	18906	28643	28643					0.02694641595144276
SELPTTVTV	9	Unmodified	_SELPTTVTV_					0	0	0		nc|ENSG00000106459|Q16656-3|NRF1;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	946.509154	945.501877	0.55204	0.00052251	0.50317	0.00047625	1.0552	0.00099876	946.5094873772819	43.465	0.16673	43.091	42.997	43.163	-0.37433	-0.00027818	0.00035825	NaN	100.37	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4218500			29771	2080	18807	18906							0.02694641595144276
SELQFSNAP	9	Unmodified	_SELQFSNAP_					0	0	0			REV__ENSG00000005175|ENST00000005386|RPAP3	REV__ENSG00000005175|ENST00000005386|RPAP3	MSMS	HCT116MG_D190212_S4	4	496.7398376464844	2	496.737814	991.461075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.296	1	17.126	16.626	17.626	-0.17047								0	0	0	0.42657	1	5727	5727		32.305	0.18852	1		+		29772	10471	18808	18907	28644	28644					-0.03499699724477523
SELQKIHRA	9	Unmodified	_SELQKIHRA_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MSMS	HCT116MG_D190212_S2	2	541.309326171875	2	541.309272	1080.60399	0.48221	0.00026102	0.1529	8.2766E-05	0.63511	0.00034379	541.3093082937501	19.478	0.2078	19.108	18.992	19.2	-0.3695					5	3	2	0	0	0	0.37637	1	6775	6775		30.703	11.446	1	5656400			29773	6626	18809	18908	28645	28645					0.06691352457414723
SELQKIHRA	9	Unmodified	_SELQKIHRA_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MSMS	HCT116MG_D190212_S2	2	361.2080993652344	3	361.208607	1080.60399	-0.18366	-6.6338E-05	-0.26967	-9.7408E-05	-0.45333	-0.00016375	361.208449001966	19.492	0.2078	19.122	18.992	19.2	-0.3695					5	3	2	0	0	0	0.55732	1	6779	6779		13.615	6.0059	1	6049900			29774	6626	18809	18908	28646	28646					0.06691352457414723
SELQKIHRA	9	Unmodified	_SELQKIHRA_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MSMS	HCT116MG_D190212_S3	3	361.20843505859375	3	361.208607	1080.60399	-0.19518	-7.0499E-05	0.058674	2.1194E-05	-0.1365	-4.9305E-05	361.20859151827534	18.102	0.20778	18.179	18.049	18.257	0.076334					6	3	2	0	0	0	0.30874	1	6150	6150		29.841	19.041	1	3504200			29775	6626	18809	18908	28647	28647					0.06691352457414723
SELQKQRRYFH	11	Unmodified	_SELQKQRRYFH_					0	0	0			REV__ENSG00000156486|ENST00000287042|KCNS2	REV__ENSG00000156486|ENST00000287042|KCNS2	MSMS	HCT116MG_D190212_S4	4	746.3930053710938	2	746.394399	1490.77424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.334	1	42.959	42.459	43.459	-0.37433								0	0	0	0.94416	1	15927	15927		9.3831	1.2276	1		+		29776	12724	18810	18909	28648	28648					0.048488433890270244
SELQREGDWSL	11	Unmodified	_SELQREGDWSL_					0	0	0		nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-2|PIGT	MULTI-MSMS	HCT116MG_D190212_S3	3	660.3154907226562	2	660.314948	1318.61534	0.56912	0.0003758	0.051247	3.3839E-05	0.62037	0.00040964	660.3149853713818	40.241	0.46664	39.939	39.645	40.112	-0.30142					15	9	2	0	0	0	0.7298	1	14924	14924		10.8	2.0541	1	6874300			29777	9443	18811	18910	28649	28649					-0.031219150297602027
SELQSVRTA	9	Unmodified	_SELQSVRTA_					0	0	0		DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant;ENSG00000173402|ENST00000308775|DAG1	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	495.7642822265625	2	495.764363	989.514173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.584	1	24.5	24	25	-0.083694								0	0	0	0.053528	1	8737	8737		69.338	9.2643	1				29778	638	18812	18911	28650	28650					0.018996780581915118
SELQSVRTA	9	Unmodified	_SELQSVRTA_					0	0	0		DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant;ENSG00000173402|ENST00000308775|DAG1	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	DAG1|p.P419Lfs*88|1|0.27|ENSG00000173402|chr3:49531764-49531764|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	495.7643737792969	2	495.764363	989.514173	0.54159	0.0002685	-0.38607	-0.0001914	0.15552	7.7099E-05	495.76398995324934	24.792	0.20747	24.523	24.393	24.601	-0.26881					6	3	2	0	0	0	0.14376	1	8766	8766		49.527	7.5717	1	4626200			29779	638	18812	18911	28651	28651					0.018996780581915118
SELQVHSA	8	Unmodified	_SELQVHSA_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	HCT116MG_D190212_S1	1	435.7193298339844	2	435.719424	869.424296	-0.017951	-7.8218E-06	-1.5211	-0.00066275	-1.539	-0.00067058	435.7193930503599	23.288	0.26075	23.288	23.158	23.418	0					7	4	2	0	0	0	0.46892	1	8313	8313		43.858	3.901	1	4915400			29780	3093	18813	18912	28652	28652					-0.015639515503835355
SELQVHSA	8	Unmodified	_SELQVHSA_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	HCT116MG_D190212_S2	2	435.7193603515625	2	435.719424	869.424296	0.10456	4.5561E-05	-0.08392	-3.6566E-05	0.020644	8.9948E-06	435.7193435723033	23.76	0.31246	23.377	23.247	23.56	-0.38324					10	5	2	0	0	0	0.061818	1	8485	8485		110.67	6.9264	1	27915000			29781	3093	18813	18912	28653	28653					-0.015639515503835355
SELQVHSA	8	Unmodified	_SELQVHSA_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	HCT116MG_D190212_S3	3	435.7193603515625	2	435.719424	869.424296	0.13678	5.9599E-05	-0.22188	-9.6679E-05	-0.085102	-3.7081E-05	435.719314196313	23.24	0.36486	23.2	23.031	23.396	-0.03968					10	6	2	0	0	0	0.095352	1	8201	8201		96.111	21.182	1	15181000			29782	3093	18813	18912	28654	28654					-0.015639515503835355
SELQVHSA	8	Unmodified	_SELQVHSA_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	HCT116MG_D190212_S4	4	435.7196960449219	2	435.719424	869.424296	0.13229	5.7642E-05	-0.58964	-0.00025692	-0.45735	-0.00019927	435.7191947056194	23.493	0.31207	23.246	23.116	23.428	-0.24775					8	5	2	0	0	0	0.27593	2	8246	8246;8251		61.357	15.337	1	7035500			29783	3093	18813	18912	28655;28656	28655					-0.015639515503835355
SELRKVSEP	9	Unmodified	_SELRKVSEP_					0	0	0		ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B;BCL11B|p.P420Rfs*55|1|0.23|ENSG00000127152|chr14:99175577-99175577|G/-|frameshift_variant	ENSG00000127152|ENST00000357195|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	MULTI-MSMS	HCT116MG_D190212_S3	3	522.78857421875	2	522.787838	1043.56112	0.21528	0.00011255	0.076103	3.9786E-05	0.29139	0.00015233	522.7879189015052	23.999	0.62523	23.938	23.582	24.207	-0.061449					14	11	2	0	0	0	0.32978	1	8526	8526		27.629	2.2295	1	2404200			29784	2958	18814	18913	28657	28657					0.04108537609340601
SELRSLPPP	9	Unmodified	_SELRSLPPP_					0	0	0		nc|ENSG00000134744|Q5TAX3-2|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4	nc|ENSG00000134744|Q5TAX3-2|TUT4	nc|ENSG00000134744|Q5TAX3-2|TUT4	MSMS	HCT116MG_D190212_S2	2	498.2801513671875	2	498.279649	994.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.323	1	33.13	32.63	33.63	-0.19297								0	0	0	0.050056	1	12360	12360		70.332	2.9881	1				29785	3300	18815	18914	28658	28658					0.04725456443236453
SELRSLPPP	9	Unmodified	_SELRSLPPP_					0	0	0		nc|ENSG00000134744|Q5TAX3-2|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4	nc|ENSG00000134744|Q5TAX3-2|TUT4	nc|ENSG00000134744|Q5TAX3-2|TUT4	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2791748046875	2	498.279649	994.544745	0.44301	0.00022074	-0.22848	-0.00011385	0.21453	0.0001069	498.2794791604254	33.36	0.37594	33.07	32.98	33.356	-0.29013					12	7	2	0	0	0	0.12421	1	12267	12267		53.404	13.454	1	5665800			29786	3300	18815	18914	28659	28659					0.04725456443236453
SELSARMESL	10	Unmodified	_SELSARMESL_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MSMS	HCT116MG_D190212_S3	3	561.7830200195312	2	561.776613	1121.53867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.495	1	29.259	28.759	29.759	-0.23655								0	0	0	0.82636	1	10718	10718		25.399	1.3787	1		+		29787	11427	18816	18915	28660	28660					-0.01723429850608227
SELSDLHAH	9	Unmodified	_SELSDLHAH_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	504.7412109375	2	504.740888	1007.46722	0.23288	0.00011754	0.15824	7.9871E-05	0.39112	0.00019742	504.74099168791145	25.275	0.57378	25.275	25.092	25.666	0					19	10	2	0	0	0	0.22969	1	9064	9064		38.151	22.304	1	113870000		+	29788	545	18817	18916	28661	28661					-0.03621181492962933
SELSDLHAH	9	Unmodified	_SELSDLHAH_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MSMS	HCT116MG_D190212_S2	2	504.7411804199219	2	504.740888	1007.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.687	1	25.317	24.817	25.817	-0.36914								0	0	0	0.43047	1	9261	9261		32.117	11.663	1			+	29789	545	18817	18916	28662	28662					-0.03621181492962933
SELSNVEFH	9	Unmodified	_SELSNVEFH_					0	0	0		ENST00000487378.1_1_22:20100088-20100785:-|nuORF	ENST00000487378.1_1_22:20100088-20100785:-|nuORF	ENST00000487378.1_1_22:20100088-20100785:-|nuORF	MSMS	HCT116MG_D190212_S3	3	531.7371215820312	2	531.248546	1060.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.327	1	32.049	31.549	32.549	-0.27841								0	0	0	0.768	1	11844	11844		7.9102	0	1				29790	8304	18818	18917	28663	28663					-0.04528314695744484
SELSRKQDP	9	Unmodified	_SELSRKQDP_					0	0	0			REV__nc|ENSG00000187556|P60323|NANOS3	REV__nc|ENSG00000187556|P60323|NANOS3	MSMS	HCT116MG_D190212_S4	4	530.2754516601562	2	530.275095	1058.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.144	1	23.886	23.386	24.386	-0.25816								0	0	0	0.69648	1	8491	8491		19.257	0	1		+		29791	17252	18819	18918	28664	28664					0.008710630869245506
SELSRTYLP	9	Unmodified	_SELSRTYLP_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	533.283935546875	2	533.282389	1064.55022	0.60872	0.00032462	0.22947	0.00012237	0.83819	0.00044699	533.2824905634338	40.62	0.98422	40.55	39.897	40.881	-0.069626					45	18	3	0	0	0	0.37539	1	15171	15171		24.021	2.2739	1	78989000			29792	3325	18820	18919	28665	28665					0.02053135235018999
SELSSNPAA	9	Unmodified	_SELSSNPAA_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MULTI-MSMS	HCT116MG_D190212_S3	3	875.4116821289062	1	875.410502	874.403226	0.71327	0.0006244	-0.34502	-0.00030203	0.36825	0.00032237	875.410347231605	23.93	0.36494	23.869	23.686	24.051	-0.061449					10	6	2	0	0	0	0.010834	1	8489	8489		111.29	26.015	1	4242800			29793	6230	18821	18920	28666	28666					-0.03899961649904071
SELVHKETA	9	Unmodified	_SELVHKETA_					0	0	0		nc|ENSG00000131370|O60239-2|SH3BP5;ENSG00000131370|ENST00000383791|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	MULTI-MSMS	HCT116MG_D190212_S1	1	507.2666931152344	2	507.266739	1012.51892	0.49007	0.0002486	-0.39256	-0.00019913	0.097513	4.9465E-05	507.2664492195089	17.954	0.20865	17.954	17.828	18.037	0					6	3	2	0	0	0	0.012531	1	6147	6147		107.1	39.019	1	21564000			29794	3133	18822	18921	28667	28667					0.013165622009410072
SELVHKETA	9	Unmodified	_SELVHKETA_					0	0	0		nc|ENSG00000131370|O60239-2|SH3BP5;ENSG00000131370|ENST00000383791|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	MULTI-MSMS	HCT116MG_D190212_S2	2	506.769287109375	2	507.266739	1012.51892	-0.07629	-3.8699E-05	0.33672	0.0001708	0.26043	0.00013211	507.2668867811365	18.596	0.4684	18.232	18.061	18.529	-0.36325					19	8	4	0	0	0	0.0082095	2	6402	6402;6406		117.76	70.012	1	105470000			29795	3133	18822	18921	28668;28669	28668					0.013165622009410072
SEMASNKF	8	Unmodified	_SEMASNKF_					0	0	0		PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;ENSG00000113448|ENST00000340635|PDE4D	PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant	PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	457.2079772949219	2	457.207835	912.401117	0.074501	3.4062E-05	-0.017538	-8.0187E-06	0.056962	2.6044E-05	457.2077177035674	27.047	0.26002	27.047	26.918	27.178	0					7	4	2	0	0	0	0.37603	1	9830	9830		52.268	18.166	1	4808000			29796	2389	18823	18922	28670	28670					-0.05858713659347359
SEMASNKF	8	Unmodified	_SEMASNKF_					0	0	0		PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;ENSG00000113448|ENST00000340635|PDE4D	PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant	PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	457.2085266113281	2	457.207835	912.401117	0.31768	0.00014525	0.15234	6.9652E-05	0.47002	0.0002149	457.2080551848698	27.559	0.20721	27.217	27.088	27.295	-0.34201					5	3	2	0	0	0	0.064348	1	10020	10020		108	61.976	1	16249000			29797	2389	18823	18922	28671	28671					-0.05858713659347359
SEMASNKF	8	Unmodified	_SEMASNKF_					0	0	0		PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant;nc|ENSG00000184588|Q07343-2|PDE4B;PDE4D|p.K577Nfs*3|1|0.32|ENSG00000113448|chr5:58976449-58976449|T/-|frameshift_variant;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;ENSG00000113448|ENST00000340635|PDE4D	PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant	PDE4B|p.I436Sfs*15|1|0.06|ENSG00000184588|chr1:66365688-66365689|-/GTATCCTACT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	457.20770263671875	2	457.207835	912.401117	0.40487	0.00018511	-0.13161	-6.0173E-05	0.27326	0.00012494	457.20764227560414	27.349	0.41619	27.179	27.016	27.432	-0.16933					10	7	2	0	0	0	0.094591	1	9862	9862		96.285	50.264	1	6812100			29798	2389	18823	18922	28672	28672					-0.05858713659347359
SEMDGAQHA	9	Unmodified	_SEMDGAQHA_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	HCT116MG_D190212_S2	2	473.1903991699219	2	473.190174	944.365795	0.25186	0.00011918	-0.018376	-8.6952E-06	0.23349	0.00011048	473.19010858953203	17.562	0.20883	17.213	17.082	17.291	-0.34933					6	3	2	0	0	0	0.084109	1	5990	5990		61.357	32.871	1	5117600			29799	2833	18824	18923	28673	28673					-0.10861376187165206
SEMDGAQHAA	10	Unmodified	_SEMDGAQHAA_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	HCT116MG_D190212_S2	2	508.7857971191406	2	508.708731	1015.40291	0.085345	4.3416E-05	0.30791	0.00015664	0.39326	0.00020005	508.70875041341395	18.345	0.2092	17.982	17.851	18.061	-0.36325					5	3	2	0	0	0	0.28233	1	6276	6276		16.149	0.30192	1	4329800			29800	2833	18825	18924	28674	28674					-0.10417704641406544
SEMMIHVLP	9	Unmodified	_SEMMIHVLP_					0	0	0		ENST00000432667.5_1_2:676024-676177:-|nuORF	ENST00000432667.5_1_2:676024-676177:-|nuORF	ENST00000432667.5_1_2:676024-676177:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.3524169921875	2	528.764463	1055.51437	0.41111	0.00021738	-0.1955	-0.00010337	0.21561	0.00011401	528.7641397241856	51.25	0.2052	51.071	50.966	51.171	-0.17869					5	3	2	0	0	0	0.016345	1	19663	19663		109.63	79.404	1	7686900			29801	7862	18826	18925	28675	28675					-0.01116361537810917
SEMMIHVLP	9	Unmodified	_SEMMIHVLP_					0	0	0		ENST00000432667.5_1_2:676024-676177:-|nuORF	ENST00000432667.5_1_2:676024-676177:-|nuORF	ENST00000432667.5_1_2:676024-676177:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	528.7643432617188	2	528.764463	1055.51437	0.41208	0.00021789	-0.25757	-0.00013619	0.15451	8.1699E-05	528.7643555560533	51.504	0.31499	51.193	51.015	51.33	-0.31166					12	5	3	0	0	0	0.0066639	1	19454	19454		123.1	88.694	1	5888200			29802	7862	18826	18925	28676	28676					-0.01116361537810917
SEMPWLAVP	9	Unmodified	_SEMPWLAVP_					0	0	0		nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	MULTI-MSMS	HCT116MG_D190212_S2	2	1029.50830078125	1	1029.50738	1028.5001	0.45563	0.00046908	0.19155	0.00019721	0.64719	0.00066629	1029.5075241044376	57.827	0.26156	57.652	57.521	57.783	-0.17494					10	4	3	0	0	0	0.031005	1	22349	22349		85.357	47.206	1	12496000			29803	4948	18827	18926	28677	28677					-0.013006906944610819
SEMPWLAVP	9	Unmodified	_SEMPWLAVP_					0	0	0		nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	nc|ENSG00000167693|Q6DKJ4-2|NXN	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1029.50738	1028.5001	0.81603	0.00084011	0.72603	0.00074745	1.5421	0.0015876	1029.5085885290475	57.921	0.15679	57.646	57.568	57.725	-0.27434	-0.0028172	0.0005422	NaN	85.357	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	841460			29804	4948	18827	18926							-0.013006906944610819
SEMQRHYVMY	10	Unmodified	_SEMQRHYVMY_					0	0	0		ENSG00000104964|ENST00000327141|TLE5;nc|ENSG00000104964|Q08117-2|TLE5	ENSG00000104964|ENST00000327141|TLE5	ENSG00000104964|ENST00000327141|TLE5	MULTI-MSMS	HCT116MG_D190212_S1	1	672.2982177734375	2	672.29719	1342.57983	0.70896	0.00047663	1.4652	0.00098505	2.1742	0.0014617	672.2980298535509	25.64	0.26139	25.64	25.509	25.77	0					7	4	2	0	0	0	0.40515	1	9235	9235		41.84	8.3947	1	10507000			29805	1972	18828	18927	28678	28678					-0.07775992082770244
SEMQRHYVMY	10	Unmodified	_SEMQRHYVMY_					0	0	0		ENSG00000104964|ENST00000327141|TLE5;nc|ENSG00000104964|Q08117-2|TLE5	ENSG00000104964|ENST00000327141|TLE5	ENSG00000104964|ENST00000327141|TLE5	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	672.29719	1342.57983	0.49063	0.00032985	1.7491	0.0011759	2.2397	0.0015058	672.2984359755706	25.997	0.41618	25.628	25.394	25.81	-0.36914	-0.019915	0.00036389	NaN	41.84	16	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58673000			29806	1972	18828	18927							-0.07775992082770244
SEMQRHYVMY	10	Unmodified	_SEMQRHYVMY_					0	0	0		ENSG00000104964|ENST00000327141|TLE5;nc|ENSG00000104964|Q08117-2|TLE5	ENSG00000104964|ENST00000327141|TLE5	ENSG00000104964|ENST00000327141|TLE5	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	672.29719	1342.57983	0.96076	0.00064592	1.352	0.00090893	2.3127	0.0015548	672.2981417268992	25.804	0.26068	25.676	25.546	25.807	-0.12795	0.028321	-0.00017008	NaN	41.84	16	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37441000			29807	1972	18828	18927							-0.07775992082770244
SEMQSVPASY	10	Unmodified	_SEMQSVPASY_					0	0	0			REV__HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	REV__HYDIN|p.R1703Lfs*51|1|0.5|ENSG00000157423|chr16:70973950-70973951|-/GA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	549.77392578125	2	549.742239	1097.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.843	1	31.572	31.072	32.072	-0.27028								0	0	0	0.94107	1	11648	11648		6.7232	0.51738	1		+		29808	12751	18829	18928	28679	28679					-0.07491094150304889
SEMRAPPAA	9	Unmodified	_SEMRAPPAA_					0	0	0		ENST00000531368.1_1_17:42286674-42287095:-|nuORF;nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	ENST00000531368.1_1_17:42286674-42287095:-|nuORF	ENST00000531368.1_1_17:42286674-42287095:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	465.2290344238281	2	465.229102	928.443651	0.28558	0.00013286	-0.15498	-7.2099E-05	0.13061	6.0761E-05	465.22900465433213	22.293	0.72309	22.294	22.094	22.817	0.00074577					19	13	2	0	0	0	0.047849	1	7810	7810		75.761	25.828	1	5008000			29809	2154	18830	18929	28680	28680					-0.023433185311318994
SEMRAPPAA	9	Unmodified	_SEMRAPPAA_					0	0	0		ENST00000531368.1_1_17:42286674-42287095:-|nuORF;nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	ENST00000531368.1_1_17:42286674-42287095:-|nuORF	ENST00000531368.1_1_17:42286674-42287095:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	465.2294616699219	2	465.229102	928.443651	-0.10077	-4.6879E-05	0.36928	0.0001718	0.26852	0.00012492	465.2292950702648	22.566	0.46933	22.329	22.133	22.603	-0.23758					15	8	2	0	0	0	0.10244	1	7860	7860		57.722	23.32	1	2245100			29810	2154	18830	18929	28681	28681					-0.023433185311318994
SEMRAVIKA	9	Unmodified	_SEMRAVIKA_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	HCT116MG_D190212_S1	1	502.7815246582031	2	502.781502	1003.54845	0.3512	0.00017657	-0.52418	-0.00026355	-0.17299	-8.6975E-05	502.7812378896866	27.047	0.20782	27.047	26.918	27.125	0					5	3	2	0	0	0	0.52876	1	9816	9816		15.248	5.1746	1	8588000			29811	4651	18831	18930	28682	28682					0.04681802945447089
SEMRAVIKA	9	Unmodified	_SEMRAVIKA_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	HCT116MG_D190212_S2	2	502.7818298339844	2	502.781502	1003.54845	0.654	0.00032882	-0.087557	-4.4022E-05	0.56645	0.0002848	502.7814752829448	27.507	0.25843	27.165	27.037	27.295	-0.34201					9	4	3	0	0	0	0.0059958	1	9999	9999		128.93	63.697	1	53394000			29812	4651	18831	18930	28683	28683					0.04681802945447089
SEMRAVIKA	9	Unmodified	_SEMRAVIKA_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	HCT116MG_D190212_S3	3	502.78167724609375	2	502.781502	1003.54845	0.43303	0.00021772	0.30259	0.00015214	0.73562	0.00036986	502.7814972463346	27.257	0.26027	27.087	26.912	27.172	-0.16933					10	4	3	0	0	0	0.030039	1	9818	9818		86.332	21.097	1	23356000			29813	4651	18831	18930	28684	28684					0.04681802945447089
SEMRAVIKA	9	Unmodified	_SEMRAVIKA_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	HCT116MG_D190212_S4	4	502.78173828125	2	502.781502	1003.54845	0.38329	0.00019271	0.2058	0.00010347	0.58909	0.00029618	502.7814579436295	27.511	0.20776	27.189	27.044	27.252	-0.32157					6	3	2	0	0	0	0.17622	1	9867	9867		43.772	10.987	1	5761900			29814	4651	18831	18930	28685	28685					0.04681802945447089
SEMRTSHEA	9	Unmodified	_SEMRTSHEA_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S1	1	524.229736328125	2	524.22983	1046.44511	0.43743	0.00022931	-0.0046077	-2.4155E-06	0.43282	0.0002269	524.2296971692911	14.988	0.20822	14.988	14.858	15.066	0					10	3	4	0	0	0	0.043159	2	4951	4922;4951		78.06	30.329	1	16490000			29815	6305	18832	18931	28686;28687	28687					-0.07625729233018319
SEMRTSHEA	9	Unmodified	_SEMRTSHEA_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S2	2	524.2298583984375	2	524.22983	1046.44511	0.26208	0.00013739	-0.022316	-1.1699E-05	0.23977	0.00012569	524.2298049700063	11.342	0.51243	11.06	10.785	11.298	-0.28186					63	22	4	0	0	0	0.32978	1	3588	3588		27.629	9.2557	1	4598800			29816	6305	18832	18931	28688	28688					-0.07625729233018319
SEMRTSHEA	9	Unmodified	_SEMRTSHEA_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-MSMS	HCT116MG_D190212_S2	2	524.22998046875	2	524.22983	1046.44511	0.26171	0.0001372	-0.050307	-2.6372E-05	0.21141	0.00011082	524.229774885353	14.694	0.31306	14.375	14.192	14.505	-0.31952					10	5	2	0	0	0	0.019537	1	4830	4830		96.936	33.708	1	21279000			29817	6305	18832	18931	28689	28689					-0.07625729233018319
SEMSKVSKP	9	Unmodified	_SEMSKVSKP_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.G110Afs*20|1|0.38|ENSG00000115207|chr2:27343068-27343068|T/-|frameshift_variant;GTF3C2|p.E173*|1|0.49|ENSG00000115207|chr2:27342879-27342880|-/G|frameshift_variant;GTF3C2|p.L250Sfs*4|1|0.33|ENSG00000115207|chr2:27342055-27342056|-/A|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	HCT116MG_D190212_S1	1	497.2601013183594	2	496.757692	991.500831	0.25068	0.00012453	-0.096672	-4.8022E-05	0.15401	7.6504E-05	496.7574456552737	19.153	0.72936	19.153	18.558	19.287	0					19	13	2	0	0	0	0.07649	1	6600	6600		62.869	28.467	1	3395200			29818	2451	18833	18932	28690	28690					0.004741039546047432
SEMSKVSKP	9	Unmodified	_SEMSKVSKP_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.G110Afs*20|1|0.38|ENSG00000115207|chr2:27343068-27343068|T/-|frameshift_variant;GTF3C2|p.E173*|1|0.49|ENSG00000115207|chr2:27342879-27342880|-/G|frameshift_variant;GTF3C2|p.L250Sfs*4|1|0.33|ENSG00000115207|chr2:27342055-27342056|-/A|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	HCT116MG_D190212_S2	2	496.7578125	2	496.757692	991.500831	0.34418	0.00017098	0.22969	0.0001141	0.57387	0.00028507	496.7577096904965	19.855	0.77948	19.48	18.778	19.558	-0.37503					32	14	3	0	0	0	0.010825	1	6812	6812		111.31	57.476	1	42850000			29819	2451	18833	18932	28691	28691					0.004741039546047432
SEMSKVSKP	9	Unmodified	_SEMSKVSKP_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.G110Afs*20|1|0.38|ENSG00000115207|chr2:27343068-27343068|T/-|frameshift_variant;GTF3C2|p.E173*|1|0.49|ENSG00000115207|chr2:27342879-27342880|-/G|frameshift_variant;GTF3C2|p.L250Sfs*4|1|0.33|ENSG00000115207|chr2:27342055-27342056|-/A|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	HCT116MG_D190212_S3	3	496.7580261230469	2	496.757692	991.500831	0.31682	0.00015738	0.074421	3.6969E-05	0.39124	0.00019435	496.7576718813966	18.828	1.0411	18.897	18.042	19.083	0.069159					40	19	3	0	0	0	0.06555	3	6227	6074;6227;6463		67.081	32.679	1	33877000			29820	2451	18833	18932	28692;28693;28694	28693					0.004741039546047432
SEMSKVSKP	9	Unmodified	_SEMSKVSKP_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.G110Afs*20|1|0.38|ENSG00000115207|chr2:27343068-27343068|T/-|frameshift_variant;GTF3C2|p.E173*|1|0.49|ENSG00000115207|chr2:27342879-27342880|-/G|frameshift_variant;GTF3C2|p.L250Sfs*4|1|0.33|ENSG00000115207|chr2:27342055-27342056|-/A|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	HCT116MG_D190212_S4	4	496.75799560546875	2	496.757692	991.500831	0.38718	0.00019234	0.078632	3.9061E-05	0.46581	0.0002314	496.7576113423791	19.242	0.77983	19.055	18.453	19.233	-0.18674					35	14	3	0	0	0	0.22528	1	6340	6340		38.615	17.078	1	7842800			29821	2451	18833	18932	28695	28695					0.004741039546047432
SENAHIIEA	9	Unmodified	_SENAHIIEA_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	HCT116MG_D190212_S1	1	492.24359130859375	2	492.243264	982.471974	0.60353	0.00029709	0.3904	0.00019217	0.99394	0.00048926	492.24332796088896	28.772	0.31491	28.772	28.588	28.903	0					12	5	3	0	0	0	0.0063854	1	10494	10494		125.53	50.6	1	30969000			29822	5489	18834	18933	28696	28696					-0.019962973501833403
SENAHIIEA	9	Unmodified	_SENAHIIEA_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2436218261719	2	492.243264	982.471974	0.39504	0.00019446	0.22694	0.00011171	0.62198	0.00030617	492.2432279159058	29.259	0.30685	28.943	28.812	29.119	-0.31613					13	5	3	0	0	0	0.0038512	1	10712	10712		152.89	77.957	1	190580000			29823	5489	18834	18933	28697	28697					-0.019962973501833403
SENAHIIEA	9	Unmodified	_SENAHIIEA_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	HCT116MG_D190212_S2	2	983.4799194335938	1	983.479251	982.471974	0.86413	0.00084985	-0.12231	-0.00012029	0.74182	0.00072957	983.4787904607596	29.255	0.25529	28.939	28.812	29.067	-0.31613					7	4	2	0	0	0	0.01386	1	10731	10731		103.82	41.251	1	39924000			29824	5489	18834	18933	28698	28698					-0.019962973501833403
SENAHIIEA	9	Unmodified	_SENAHIIEA_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	HCT116MG_D190212_S3	3	492.24468994140625	2	492.243264	982.471974	0.29031	0.0001429	0.29161	0.00014354	0.58193	0.00028645	492.24338431718166	29.242	0.46857	29.02	28.838	29.306	-0.22195					26	8	4	0	0	0	0.0063854	1	10598	10598		125.53	50.6	1	220390000			29825	5489	18834	18933	28699	28699					-0.019962973501833403
SENAHIIEA	9	Unmodified	_SENAHIIEA_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	HCT116MG_D190212_S4	4	492.2434387207031	2	492.243264	982.471974	0.14102	6.9417E-05	0.4178	0.00020566	0.55882	0.00027508	492.2433906581432	29.409	0.51981	29.059	28.877	29.397	-0.34921					24	9	4	0	0	0	0.0063854	1	10619	10619		125.53	50.6	1	88850000			29826	5489	18834	18933	28700	28700					-0.019962973501833403
SENAHIIEA	9	Unmodified	_SENAHIIEA_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	HCT116MG_D190212_S4	4	983.4797973632812	1	983.479251	982.471974	0.56935	0.00055995	-0.9041	-0.00088917	-0.33475	-0.00032922	983.4789537529268	29.408	0.25989	29.059	28.929	29.189	-0.34921					6	4	2	0	0	0	0.016412	1	10632	10632		100.09	37.518	1	5011600			29827	5489	18834	18933	28701	28701					-0.019962973501833403
SENDMRFVY	9	Unmodified	_SENDMRFVY_					0	0	0		ENST00000296642.4_1_5:114552647-114588833:-|nuORF;PGGT1B|p.S241Ffs*25|1|0.36|ENSG00000164219|chr5:115221945-115221946|-/A|frameshift_variant;nc|ENSG00000164219|P53609-2|PGGT1B;ENSG00000164219|ENST00000419445|PGGT1B	ENST00000296642.4_1_5:114552647-114588833:-|nuORF	ENST00000296642.4_1_5:114552647-114588833:-|nuORF	MSMS	HCT116MG_D190212_S2	2	580.7554321289062	2	580.755681	1159.49681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.476	1	43.402	42.902	43.902	-0.073376								0	0	0	0.17014	1	16485	16485		49.527	25.507	1				29828	4683	18835	18934	28702	28702					-0.07655985539122412
SENDMRFVY	9	Unmodified	_SENDMRFVY_					0	0	0		ENST00000296642.4_1_5:114552647-114588833:-|nuORF;PGGT1B|p.S241Ffs*25|1|0.36|ENSG00000164219|chr5:115221945-115221946|-/A|frameshift_variant;nc|ENSG00000164219|P53609-2|PGGT1B;ENSG00000164219|ENST00000419445|PGGT1B	ENST00000296642.4_1_5:114552647-114588833:-|nuORF	ENST00000296642.4_1_5:114552647-114588833:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	581.267822265625	2	580.755681	1159.49681	0.49517	0.00028757	-0.98133	-0.00056991	-0.48616	-0.00028234	580.7553168335264	43.728	0.31295	43.422	43.188	43.5	-0.30616					7	5	2	0	0	0	0.12421	1	16324	16324		53.404	38.566	1	1880500			29829	4683	18835	18934	28703	28703					-0.07655985539122412
SENEEFVEV	9	Unmodified	_SENEEFVEV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S2	2	541.2379760742188	2	541.237844	1080.46113	0.70874	0.00038359	-0.62105	-0.00033613	0.08769	4.7461E-05	541.2373023011321	43.811	0.56474	43.733	43.505	44.069	-0.078373					16	10	3	0	0	0	0.016701	1	16631	16631		99.799	59.842	1	37665000			29830	2190	18836	18935	28704	28704					-0.07587744515149097
SENEEFVEV	9	Unmodified	_SENEEFVEV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S2	2	1081.4686279296875	1	1081.46841	1080.46113	0.70487	0.00076229	-0.74333	-0.00080388	-0.038455	-4.1588E-05	1081.4676626364123	43.763	0.25723	43.685	43.556	43.813	-0.078373					11	4	3	0	0	0	0.0062667	1	16632	16632		126.57	65.208	1	22564000			29831	2190	18836	18935	28705	28705					-0.07587744515149097
SENEEFVEV	9	Unmodified	_SENEEFVEV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S3	3	541.238037109375	2	541.237844	1080.46113	0.58191	0.00031495	0.065325	3.5356E-05	0.64724	0.00035031	541.2378315734583	44.023	0.3646	43.717	43.5	43.865	-0.30616					16	6	4	0	0	0	0.0038833	1	16435	16435		152.41	70.799	1	14034000			29832	2190	18836	18935	28706	28706					-0.07587744515149097
SENEEFVEV	9	Unmodified	_SENEEFVEV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S3	3	1081.4681396484375	1	1081.46841	1080.46113	0.51884	0.00056111	0.57684	0.00062384	1.0957	0.0011849	1081.4678477257041	43.989	0.3127	43.683	43.5	43.813	-0.30616					8	5	2	0	0	0	0.0062667	1	16455	16455		126.57	74.298	1	5734200			29833	2190	18836	18935	28707	28707					-0.07587744515149097
SENEEFVEV	9	Unmodified	_SENEEFVEV_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S4	4	541.2380981445312	2	541.237844	1080.46113	0.43409	0.00023495	0.15349	8.3074E-05	0.58758	0.00031802	541.2380452057886	44.038	0.31093	43.665	43.52	43.83	-0.37373					8	5	2	0	0	0	0.027442	1	16228	16228		88.954	48.997	1	3781200			29834	2190	18836	18935	28708	28708					-0.07587744515149097
SENELKKAY	9	Unmodified	_SENELKKAY_					0	0	0		ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	ENSG00000069345|ENST00000317089|DNAJA2	MULTI-MSMS	HCT116MG_D190212_S2	2	541.2800903320312	2	541.279846	1080.54514	0.51002	0.00027606	-0.34349	-0.00018593	0.16653	9.0138E-05	541.2796875761159	22.098	0.26038	21.713	21.583	21.844	-0.38503					6	4	2	0	0	0	0.21251	2	7846	7786;7846		39.957	4.0143	1	12357000			29835	1217	18837	18936	28709;28710	28710					0.008088313724329055
SENEYIMKA	9	Unmodified	_SENEYIMKA_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S1	1	542.7529907226562	2	542.752607	1083.49066	0.68825	0.00037355	0.18853	0.00010232	0.87677	0.00047587	542.752569981895	32.907	0.39882	32.907	32.794	33.193	0					15	7	3	0	0	0	0.00046881	1	12160	12160		195.45	130.22	1	71566000			29836	2835	18838	18937	28711	28711					-0.04774503770636329
SENEYIMKA	9	Unmodified	_SENEYIMKA_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7535400390625	2	542.752607	1083.49066	0.77779	0.00042215	-0.16689	-9.058E-05	0.6109	0.00033157	542.7524326339495	33.133	0.46722	32.921	32.739	33.207	-0.21135					23	8	4	0	0	0	0.0034865	1	12284	12284		165.72	100.49	1	515120000			29837	2835	18838	18937	28712	28712					-0.04774503770636329
SENEYIMKA	9	Unmodified	_SENEYIMKA_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S2	2	1084.4981689453125	1	1084.49794	1083.49066	0.78405	0.0008503	-0.21522	-0.00023341	0.56883	0.00061689	1084.497334944349	33.133	0.26069	32.921	32.792	33.052	-0.21135					7	4	2	0	0	0	0.0001093	1	12306	12306		197.81	122.88	1	51784000			29838	2835	18838	18937	28713	28713					-0.04774503770636329
SENEYIMKA	9	Unmodified	_SENEYIMKA_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S3	3	543.2542114257812	2	542.752607	1083.49066	0.55973	0.0003038	0.21121	0.00011464	0.77094	0.00041843	542.7526777626576	33.318	0.38598	33.028	32.918	33.304	-0.29013					37	10	5	0	0	0	3.8859E-05	1	12193	12193		209.87	144.64	1	283000000			29839	2835	18838	18937	28714	28714					-0.04774503770636329
SENEYIMKA	9	Unmodified	_SENEYIMKA_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S3	3	1084.4984130859375	1	1084.49794	1083.49066	0.4993	0.00054149	0.34368	0.00037272	0.84298	0.00091421	1084.4981755729893	33.318	0.2107	33.028	32.937	33.148	-0.29013					7	5	2	0	0	0	0.0038512	1	12244	12244		152.89	101.26	1	8851600			29840	2835	18838	18937	28715	28715					-0.04774503770636329
SENEYIMKA	9	Unmodified	_SENEYIMKA_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S4	4	542.7530517578125	2	542.752607	1083.49066	0.75368	0.00040906	-0.0082882	-4.4985E-06	0.74539	0.00040456	542.7525065515805	33.391	0.39191	33.009	32.873	33.265	-0.38223					39	16	4	0	0	0	0.0029864	2	12129	12129;12174		181.69	116.46	1	81683000			29841	2835	18838	18937	28716;28717	28716					-0.04774503770636329
SENEYIMKA	9	Oxidation (M)	_SENEYIM(Oxidation (M))KA_		SENEYIM(1)KA		SENEYIM(170)KA	0	0	1		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MSMS	HCT116MG_D190212_S1	1	550.75048828125	2	550.750064	1099.48558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.919	1	24.919	24.419	25.419	0								0	0	0	1.2821E-09	1	8941	8941		168.54	104.58	1				29842	2835	18838	18938	28718	28718		59			-0.060188076332678975
SENEYIMKA	9	Oxidation (M)	_SENEYIM(Oxidation (M))KA_		SENEYIM(1)KA		SENEYIM(140)KA	0	0	1		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S2	2	550.7501831054688	2	550.750064	1099.48558	0.4417	0.00024326	-0.065363	-3.5999E-05	0.37633	0.00020727	550.75009793289	25.313	0.31264	24.938	24.764	25.076	-0.37521					14	5	4	0	0	0	0.0046822	1	9104	9104		140.63	76.673	1	56748000			29843	2835	18838	18938	28719	28719		59			-0.060188076332678975
SENEYIMKA	9	Oxidation (M)	_SENEYIM(Oxidation (M))KA_		SENEYIM(1)KA		SENEYIM(180)KA	0	0	1		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S3	3	550.7501220703125	2	550.750064	1099.48558	0.51082	0.00028133	0.12866	7.0859E-05	0.63947	0.00035219	550.7499883529308	25.075	0.41705	24.969	24.787	25.204	-0.10618					16	7	3	0	0	0	0.0034469	1	8937	8937		179.17	106.21	1	53829000			29844	2835	18838	18938	28720	28720		59			-0.060188076332678975
SENEYIMKA	9	Oxidation (M)	_SENEYIM(Oxidation (M))KA_		SENEYIM(1)KA		SENEYIM(170)KA	0	0	1		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	HCT116MG_D190212_S4	4	550.7506103515625	2	550.750064	1099.48558	0.70841	0.00039016	-0.1471	-8.1014E-05	0.56131	0.00030914	550.7498882209094	25.309	0.31208	25.03	24.85	25.162	-0.27958					15	5	4	0	0	0	0.0035136	1	8951	8951		168.54	99.433	1	24568000			29845	2835	18838	18938	28721	28721		59			-0.060188076332678975
SENGYYLATA	10	Unmodified	_SENGYYLATA_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	HCT116MG_D190212_S2	2	1088.4896240234375	1	1088.48948	1087.4822	0.57025	0.00062072	-0.0020328	-2.2127E-06	0.56822	0.0006185	1088.489346450123	38.934	0.25859	38.849	38.702	38.961	-0.084618					6	4	2	0	0	0	0.025427	1	14657	14657		110.55	76.45	1	22350000			29846	2236	18839	18939	28722	28722					-0.05803734415599138
SENGYYLATA	10	Unmodified	_SENGYYLATA_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19;PRPF19|p.S440Hfs*2|1|0.3|ENSG00000110107|chr11:60897945-60897945|A/-|frameshift_variant;ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	HCT116MG_D190212_S3	3	1088.487548828125	1	1088.48948	1087.4822	0.38442	0.00041844	-0.87384	-0.00095117	-0.48942	-0.00053273	1088.4882621544768	39.147	0.26279	38.846	38.716	38.979	-0.30137					6	4	2	0	0	0	0.28726	1	14566	14566		51.63	31.176	1	3883600			29847	2236	18839	18939	28723	28723					-0.05803734415599138
SENIGLKAP	9	Unmodified	_SENIGLKAP_					0	0	0		ENSG00000132749|ENST00000255087|TESMIN;nc|ENSG00000132749|Q9Y4I5-3|TESMIN;nc|ENSG00000132749|Q9Y4I5-2|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	MSMS	HCT116MG_D190212_S3	3	464.75860595703125	2	464.758549	927.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.007	1	33.713	33.213	34.213	-0.29419								0	0	0	0.099502	1	12502	12502		56.177	11.77	1				29848	3208	18840	18940	28724	28724					0.03589481034839537
SENKGSDYSSY	11	Unmodified	_SENKGSDYSSY_					0	0	0			REV__nc|ENSG00000101746|O94818-4|NOL4	REV__nc|ENSG00000101746|O94818-4|NOL4	MSMS	HCT116MG_D190212_S3	3	618.7545166015625	2	618.754389	1235.49423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.881	1	25.753	25.253	26.253	-0.12795								0	0	0	0.88801	1	9260	9260		21.537	4.4241	1		+		29849	11131	18841	18941	28725	28725					-0.11410162463062079
SENLLGKQF	9	Unmodified	_SENLLGKQF_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2772216796875	2	518.277106	1034.53966	0.56538	0.00029302	-0.17379	-9.0072E-05	0.39158	0.00020295	518.2769179507112	42.629	0.31211	42.559	42.377	42.689	-0.069984					11	5	3	0	0	0	0.39921	1	16176	16176		22.658	4.5117	1	17707000			29850	438	18842	18942	28726	28726					0.023771525806068894
SENLLGKQF	9	Unmodified	_SENLLGKQF_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2772216796875	2	518.277106	1034.53966	0.33405	0.00017313	0.051919	2.6908E-05	0.38597	0.00020004	518.2768993997287	42.89	0.20765	42.586	42.456	42.663	-0.30472					5	3	2	0	0	0	0.0053819	1	15998	15998		134.3	80.463	1	4947600			29851	438	18842	18942	28727	28727					0.023771525806068894
SENPDRHLL	9	Unmodified	_SENPDRHLL_					0	0	0			REV__ENST00000376414.4_1_13:99948343-99959645:-|nuORF	REV__ENST00000376414.4_1_13:99948343-99959645:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	540.7459716796875	2	540.775262	1079.53597	0.44771	0.00024211	0.432	0.00023361	0.8797	0.00047572	541.2768809595223	21.648	0.4208	21.667	21.483	21.903	0.018446					9	7	2	0	0	0	0.23771	1	7601	7601		20.454	0	1	1636800	+		29852	15224	18843	18943	28728	28728					-0.000615171932395242
SENPSDTKEH	10	Unmodified	_SENPSDTKEH_					0	0	0		nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	MSMS	HCT116MG_D190212_S2	2	572.2493286132812	2	572.249274	1142.484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.206	1	14.88	14.38	15.38	-0.32684								0	0	0	0.94551	1	5036	5036		5.7319	1.4026	1				29853	5649	18844	18944	28729	28729					-0.08154725397662332
SENPSVYVP	9	Unmodified	_SENPSVYVP_					0	0	0		ENST00000587275.1_1_19:56173897-56175127:+|nuORF;nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	991.4713745117188	1	991.473103	990.465826	0.3924	0.00038905	0.015403	1.5272E-05	0.4078	0.00040432	991.4728083742093	40.098	0.31131	40.098	39.917	40.228	0					8	5	2	0	0	0	0.0077497	1	15068	15068		118.89	60.216	1	15530000			29854	1130	18845	18945	28730	28730					-0.029788155817072948
SENPSVYVP	9	Unmodified	_SENPSVYVP_					0	0	0		ENST00000587275.1_1_19:56173897-56175127:+|nuORF;nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	991.4733276367188	1	991.473103	990.465826	0.79154	0.00078479	-0.053099	-5.2646E-05	0.73844	0.00073215	991.4728034217133	40.148	0.571	40.076	39.894	40.465	-0.072838					23	10	3	0	0	0	0.0077497	1	15136	15136		118.89	60.216	1	108930000			29855	1130	18845	18945	28731	28731					-0.029788155817072948
SENPSVYVP	9	Unmodified	_SENPSVYVP_					0	0	0		ENST00000587275.1_1_19:56173897-56175127:+|nuORF;nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	991.4736938476562	1	991.473103	990.465826	0.60683	0.00060166	0.036599	3.6286E-05	0.64343	0.00063795	991.4730190333448	40.387	0.5729	40.085	39.851	40.423	-0.30161					23	10	3	0	0	0	0.0077497	1	14973	14973		118.89	60.216	1	55912000			29856	1130	18845	18945	28732	28732					-0.029788155817072948
SENPSVYVP	9	Unmodified	_SENPSVYVP_					0	0	0		ENST00000587275.1_1_19:56173897-56175127:+|nuORF;nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	MSMS	HCT116MG_D190212_S3	3	496.2398986816406	2	496.24019	990.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.481	1	40.18	39.68	40.68	-0.30161								0	0	0	0.090763	1	15030	15030		58.679	24.277	1				29857	1130	18845	18945	28733	28733					-0.029788155817072948
SENPSVYVP	9	Unmodified	_SENPSVYVP_					0	0	0		ENST00000587275.1_1_19:56173897-56175127:+|nuORF;nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	ENST00000587275.1_1_19:56173897-56175127:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	991.4736938476562	1	991.473103	990.465826	0.62995	0.00062458	0.0085129	8.4403E-06	0.63847	0.00063302	991.4730077831829	40.443	0.60445	40.065	39.865	40.47	-0.37828					26	12	3	0	0	0	0.0077497	1	14825	14825		118.89	60.216	1	21614000			29858	1130	18845	18945	28734	28734					-0.029788155817072948
SENPVPLTV	9	Unmodified	_SENPVPLTV_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	HCT116MG_D190212_S2	2	955.5103149414062	1	955.509488	954.502212	0.78813	0.00075307	-0.022949	-2.1928E-05	0.76518	0.00073114	955.5096092002531	44.957	0.41746	44.865	44.683	45.101	-0.092472					13	7	2	0	0	0	8.7331E-05	1	17092	17092		201.57	101.77	1	35925000			29859	3102	18846	18946	28735	28735					0.02314061314996252
SENPVPLTV	9	Unmodified	_SENPVPLTV_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	HCT116MG_D190212_S3	3	955.5101928710938	1	955.509488	954.502212	0.82678	0.00079	0.18071	0.00017267	1.0075	0.00096267	955.5093642418884	45.21	0.41722	44.901	44.68	45.098	-0.30927					11	7	2	0	0	0	0.0041644	1	16917	16917		148.27	79.163	1	5319900			29860	3102	18846	18946	28736	28736					0.02314061314996252
SENQHLVSP	9	Unmodified	_SENQHLVSP_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7489929199219	2	505.748713	1009.48287	0.57544	0.00029103	0.70612	0.00035712	1.2816	0.00064815	505.7485756983388	25.806	1.1426	25.436	24.978	26.12	-0.36914					61	21	5	0	0	0	0.0050238	1	9324	9324		137.42	78.745	1	253610000			29861	1770	18847	18947	28737	28737					-0.02148894975903204
SENQHLVSP	9	Unmodified	_SENQHLVSP_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	1010.49072265625	1	1010.49015	1009.48287	0.83386	0.00084261	0.41163	0.00041595	1.2455	0.0012586	1010.4904687172992	25.982	0.51912	25.613	25.394	25.913	-0.36914					16	9	2	0	0	0	0.0067688	1	9354	9354		122.18	64.708	1	12977000			29862	1770	18847	18947	28738	28738					-0.02148894975903204
SENQHLVSP	9	Unmodified	_SENQHLVSP_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7488098144531	2	505.748713	1009.48287	0.41273	0.00020874	2.3342	0.0011805	2.7469	0.0013892	505.75002342235024	25.361	1.3025	25.255	24.839	26.142	-0.10618					73	24	5	0	0	0	0.0050238	2	9209	8988;9209		137.42	78.745	1	235880000			29863	1770	18847	18947	28739;28740	28740					-0.02148894975903204
SENQRLVA	8	Unmodified	_SENQRLVA_					0	0	0		nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000070182|P11277-3|SPTB	MSMS	HCT116MG_D190212_S3	3	458.74578857421875	2	458.745973	915.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.156	1	24.094	23.594	24.594	-0.061449								0	0	0	0.7984	1	8564	8564		22.736	3.4793	1				29864	1233	18848	18948	28741	28741					0.016274262322895083
SENRHLVSP	9	Unmodified	_SENRHLVSP_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;CSNK2A2|p.H287L|1|0.08|ENSG00000070770|chr16:58165676-58165676|T/A|missense_variant	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MSMS	HCT116MG_D190212_S4	4	519.66845703125	2	519.76998	1037.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.55	1	21.332	20.832	21.832	-0.21832								0	0	0	0.44802	1	7446	7446		31.268	8.8157	1				29865	1244	18849	18949	28742	28742					0.008145001523189421
SENRHLVSP	9	Unmodified	_SENRHLVSP_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;CSNK2A2|p.H287L|1|0.08|ENSG00000070770|chr16:58165676-58165676|T/A|missense_variant	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MSMS	HCT116MG_D190212_S4	4	519.769775390625	2	519.76998	1037.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.658	1	21.44	20.94	21.94	-0.21832								0	0	0	0.55145	1	7490	7490		26.268	5.8536	1				29866	1244	18849	18949	28743	28743					0.008145001523189421
SENTAKILA	9	Unmodified	_SENTAKILA_					0	0	0		ALDH3A2|p.P358Afs*10|1|0.34|ENSG00000072210|chr17:19663458-19663459|-/A|frameshift_variant;ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ALDH3A2|p.P358Afs*10|1|0.34|ENSG00000072210|chr17:19663458-19663459|-/A|frameshift_variant	ALDH3A2|p.P358Afs*10|1|0.34|ENSG00000072210|chr17:19663458-19663459|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	473.76348876953125	2	473.763832	945.513111	0.25126	0.00011904	-0.38238	-0.00018116	-0.13112	-6.2119E-05	473.76346939934825	29.822	0.2067	29.521	29.444	29.65	-0.30095					5	3	2	0	0	0	0.043159	1	10962	10962		78.06	17.987	1	18068000			29867	94	18850	18950	28744	28744					0.038174636892904346
SENTAKILA	9	Unmodified	_SENTAKILA_					0	0	0		ALDH3A2|p.P358Afs*10|1|0.34|ENSG00000072210|chr17:19663458-19663459|-/A|frameshift_variant;ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ALDH3A2|p.P358Afs*10|1|0.34|ENSG00000072210|chr17:19663458-19663459|-/A|frameshift_variant	ALDH3A2|p.P358Afs*10|1|0.34|ENSG00000072210|chr17:19663458-19663459|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	473.763832	945.513111	0.36868	0.00017467	-0.015638	-7.4085E-06	0.35305	0.00016726	473.7639182726804	29.82	0.26635	29.584	29.396	29.662	-0.23655	0.031217	0.00010526	NaN	78.06	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4081900			29868	94	18850	18950							0.038174636892904346
SENVKLFSA	9	Unmodified	_SENVKLFSA_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	HCT116MG_D190212_S1	1	497.76397705078125	2	497.763832	993.513111	0.1252	6.2319E-05	0.34435	0.0001714	0.46955	0.00023372	497.7639396107431	40.242	0.20742	40.242	40.124	40.332	0					5	3	2	0	0	0	0.085458	1	15149	15149		61.09	19.25	1	8237700			29869	2563	18851	18951	28745	28745					0.01609463689283075
SENVKLFSA	9	Unmodified	_SENVKLFSA_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	HCT116MG_D190212_S2	2	497.7640686035156	2	497.763832	993.513111	0.44462	0.00022132	0.005434	2.7049E-06	0.45006	0.00022402	497.76373132057665	40.225	0.31172	40.152	40.05	40.361	-0.072838					11	5	3	0	0	0	0.0034669	1	15183	15183		163.69	67.32	1	30184000			29870	2563	18851	18951	28746	28746					0.01609463689283075
SENVKLFSA	9	Unmodified	_SENVKLFSA_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	HCT116MG_D190212_S3	3	497.7638244628906	2	497.763832	993.513111	0.3738	0.00018606	-0.13701	-6.8198E-05	0.23679	0.00011786	497.7637437302867	40.477	0.31207	40.175	40.059	40.371	-0.30161					9	5	2	0	0	0	0.00446	1	15035	15035		143.91	64.313	1	11994000			29871	2563	18851	18951	28747	28747					0.01609463689283075
SENVKLFSA	9	Unmodified	_SENVKLFSA_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	HCT116MG_D190212_S4	4	497.7639465332031	2	497.763832	993.513111	0.50479	0.00025127	-0.13435	-6.6874E-05	0.37045	0.00018439	497.7637642105661	40.586	0.25568	40.208	40.082	40.338	-0.37828					6	4	2	0	0	0	0.053079	1	14919	14919		73.196	31.357	1	4356400			29872	2563	18851	18951	28748	28748					0.01609463689283075
SENVKLFSA	9	Unmodified	_SENVKLFSA_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MATCH	HCT116MG_D190212_S2	2		2	497.763832	993.513111	0.55411	0.00027582	-0.057365	-2.8554E-05	0.49675	0.00024726	497.7637324869015	40.637	0.30873	40.567	40.365	40.673	-0.069626	0.113	6.4392E-05	NaN	61.09	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11245000			29873	2563	18851	18951							0.01609463689283075
SENVKLFSA	9	Unmodified	_SENVKLFSA_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;SSX2IP|p.Q516Gfs*48|1|0.16|ENSG00000117155|chr1:84650487-84650488|-/CA|frameshift_variant;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MATCH	HCT116MG_D190212_S3	3		2	497.763832	993.513111	0.58107	0.00028924	-0.68128	-0.00033911	-0.1002	-4.9877E-05	497.76362725184697	40.855	0.20841	40.554	40.423	40.632	-0.30161	0.099322	-0.00055673	NaN	61.09	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6239900			29874	2563	18851	18951							0.01609463689283075
SENVWRMFHHY	11	Unmodified	_SENVWRMFHHY_					0	0	0		ENST00000464560.5_1_3:114412406-114429137:-|nuORF	ENST00000464560.5_1_3:114412406-114429137:-|nuORF	ENST00000464560.5_1_3:114412406-114429137:-|nuORF	MSMS	HCT116MG_D190212_S3	3	753.3427734375	2	753.340778	1504.667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.633	1	22.615	22.115	23.115	-0.018869								0	0	0	0.94416	1	7951	7951		9.3831	1.2276	1				29875	8082	18852	18952	28749	28749					-0.06514449816836532
SENWGERLIS	10	Unmodified	_SENWGERLIS_					0	0	0		ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant;ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant;ENSG00000101745|ENST00000262126|ANKRD12;ENST00000540578.6_1_18:9182415-9235682:+|nuORF;ANKRD12|p.D530Kfs*23|1|0.42|ENSG00000101745|chr18:9254849-9254850|-/AAGAT|frameshift_variant;ANKRD12|p.K652Nfs*4|1|0.09|ENSG00000101745|chr18:9255217-9255217|A/-|frameshift_variant;ANKRD12|p.L711Kfs*5|1|0.41|ENSG00000101745|chr18:9255395-9255396|TT/-|frameshift_variant;ANKRD12|p.K983Nfs*4|1|0.36|ENSG00000101745|chr18:9256209-9256209|A/-|frameshift_variant;ANKRD12|p.S984Ifs*7|1|0.2|ENSG00000101745|chr18:9256208-9256209|-/A|frameshift_variant;ANKRD12|p.D1018Rfs*2|1|0.34|ENSG00000101745|chr18:9256313-9256314|-/A|frameshift_variant	ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant	ANKRD12|p.N1526Kfs*7|2|0.18|ENSG00000101745|chr18:9257837-9257838|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	595.7380981445312	2	595.793652	1189.57275	0.2733	0.00016283	0.24565	0.00014635	0.51895	0.00030919	595.79354579875	18.762	0.62527	18.399	18.008	18.634	-0.36325					19	11	2	0	0	0	0.30526	1	6409	6409		14.838	4.0143	1	15670000			29876	135	18853	18953	28750	28750					-0.014452653673288296
SEPAAGKGPP	10	Unmodified	_SEPAAGKGPP_					0	0	0			REV__ENSG00000126062|ENST00000266025|TMEM115	REV__ENSG00000126062|ENST00000266025|TMEM115	MULTI-MSMS	HCT116MG_D190212_S3	3	455.7351379394531	2	455.735074	909.455596	0.19758	9.0044E-05	-0.082418	-3.7561E-05	0.11516	5.2483E-05	455.7350585516018	24.399	0.20791	24.315	24.185	24.393	-0.083694					6	3	2	0	0	0	0.54141	1	8679	8679		32.305	3.8186	1	3675800	+		29877	11832	18854	18954	28751	28751					-0.0027537851627812415
SEPATIMRP	9	Unmodified	_SEPATIMRP_					0	0	0			REV__SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant	REV__SCRIB|p.A803Pfs*121|1|0.21|ENSG00000180900|chr8:143805375-143805375|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	500.756591796875	2	501.257859	1000.50117	0.44025	0.00022068	-0.00079428	-3.9814E-07	0.43945	0.00022028	501.25783923471533	17.196	0.31281	16.847	16.665	16.978	-0.34933					8	5	2	0	0	0	0.24195	1	5838	5838		12.532	0	1	15028000	+		29878	17499	18855	18955	28752	28752					0.0009352367444535048
SEPEAAWGAP	10	Unmodified	_SEPEAAWGAP_					0	0	0			REV__ENST00000203630.9_2_12:6861487-6862330:-|nuORF	REV__ENST00000203630.9_2_12:6861487-6862330:-|nuORF	MSMS	HCT116MG_D190212_S2	2	507.7306213378906	2	507.729989	1013.44543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.149	1	17.793	17.293	18.293	-0.35647								0	0	0	0.65378	1	6220	6220		39.957	5.8549	1		+		29879	14497	18856	18956	28753	28753					-0.060759862415238786
SEPHAGVEQPG	11	Unmodified	_SEPHAGVEQPG_					0	0	0		ENST00000306688.7_1_17:79981719-79983267:+|nuORF;ENST00000583383.5_1_17:79981501-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	554.257568359375	2	554.256902	1106.49925	0.29918	0.00016582	-0.067445	-3.7382E-05	0.23173	0.00012844	554.2568567677789	17.823	0.2612	17.467	17.336	17.597	-0.35647					10	4	3	0	0	0	0.71776	1	6107	6107		15.248	1.3424	1	5821300			29880	7030	18857	18957	28754	28754					-0.049738138098064155
SEPHAGVEQPG	11	Unmodified	_SEPHAGVEQPG_					0	0	0		ENST00000306688.7_1_17:79981719-79983267:+|nuORF;ENST00000583383.5_1_17:79981501-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	554.2564697265625	2	554.256902	1106.49925	0.10503	5.8213E-05	0.15843	8.7811E-05	0.26346	0.00014602	554.2569637530697	17.426	0.62442	17.508	17.273	17.898	0.081358					20	11	2	0	0	0	0.71532	1	5847	5847		16.149	0.30192	1	11736000			29881	7030	18857	18957	28755	28755					-0.049738138098064155
SEPHAGVEQPG	11	Unmodified	_SEPHAGVEQPG_					0	0	0		ENST00000306688.7_1_17:79981719-79983267:+|nuORF;ENST00000583383.5_1_17:79981501-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	554.256902	1106.49925	0.29918	0.00016582	-0.067445	-3.7382E-05	0.23173	0.00012844	554.2568567677789	17.823	0.2612	17.467	17.336	17.597	-0.35647	0.0073971	-0.0002314	NaN	16.149	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5821300			29882	7030	18857	18957							-0.049738138098064155
SEPHAGVEQPG	11	Unmodified	_SEPHAGVEQPG_					0	0	0		ENST00000306688.7_1_17:79981719-79983267:+|nuORF;ENST00000583383.5_1_17:79981501-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	554.256902	1106.49925	0.10503	5.8213E-05	0.15843	8.7811E-05	0.26346	0.00014602	554.2569637530697	17.426	0.62442	17.508	17.273	17.898	0.081358	0.048457	1.8983E-05	NaN	16.149	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11736000			29883	7030	18857	18957							-0.049738138098064155
SEPHAGVEQPG	11	Unmodified	_SEPHAGVEQPG_					0	0	0		ENST00000306688.7_1_17:79981719-79983267:+|nuORF;ENST00000583383.5_1_17:79981501-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	ENST00000306688.7_1_17:79981719-79983267:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	554.256902	1106.49925	0.12658	7.0156E-05	0.17988	9.9702E-05	0.30646	0.00016986	554.2569560986899	17.574	0.77928	17.403	17.121	17.9	-0.17047	-0.055854	4.2764E-05	NaN	16.149	25	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7943300			29884	7030	18857	18957							-0.049738138098064155
SEPIHVREY	9	Unmodified	_SEPIHVREY_					0	0	0		EXO1|p.K21E|1|0.21|ENSG00000174371|chr1:241850486-241850486|A/G|missense_variant	EXO1|p.K21E|1|0.21|ENSG00000174371|chr1:241850486-241850486|A/G|missense_variant	EXO1|p.K21E|1|0.21|ENSG00000174371|chr1:241850486-241850486|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	565.8778686523438	2	565.285463	1128.55637	0.58285	0.00032947	-2.0825	-0.0011772	-1.4997	-0.00084773	565.2842338957726	28.294	0.31436	28.294	28.06	28.375	0					9	5	2	0	0	0	0.34508	1	10294	10294		21.537	1.0834	1	8595300			29885	9144	18858	18958	28756	28756					-0.002763465334282955
SEPQRRCGP	9	Unmodified	_SEPQRRCGP_					0	0	0			REV__ENST00000300151.4_1_11:59578136-59578211:-|nuORF	REV__ENST00000300151.4_1_11:59578136-59578211:-|nuORF	MSMS	HCT116MG_D190212_S4	4	515.2484130859375	2	515.248357	1028.48216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.331	1	36.948	36.448	37.448	-0.3839								0	0	0	0.76781	1	13696	13696		8.5933	0	1		+		29886	14777	18859	18959	28757	28757					-0.030940128965994518
SEPVLSLPVRR	11	Unmodified	_SEPVLSLPVRR_					0	0	0		nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	MSMS	HCT116MG_D190212_S2	2	626.8704223632812	2	626.872237	1251.72992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.278	1	33.085	32.585	33.585	-0.19297								0	0	0	0.9465	1	12342	12342		8.1555	2.4237	1				29887	1564	18860	18960	28758	28758					0.11412439242849359
SEPYEPISPP	10	Unmodified	_SEPYEPISPP_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF;nc|ENSG00000141027|O75376-2|NCOR1;ENST00000464381.5_1_17:15935612-15961439:-|nuORF	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MSMS	HCT116MG_D190212_S1	1	558.2662353515625	2	558.266404	1114.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.157	1	36.157	35.657	36.657	0								0	0	0	0.92272	1	13473	13473		10.824	0.75	1				29888	3701	18861	18961	28759	28759					-0.03442277238764291
SEQAHPQEP	9	Unmodified	_SEQAHPQEP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant;AKAP12|p.A352V|1|0.12|ENSG00000131016|chr6:151349446-151349446|C/T|missense_variant;AKAP12|p.A352T|1|0.32|ENSG00000131016|chr6:151349445-151349445|G/A|missense_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S3	3	511.7304382324219	2	511.73052	1021.44649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.202	1	17.286	16.786	17.786	0.084467								0	0	0	0.24671	1	5763	5763		43.982	3.7426	1				29889	3119	18862	18962	28760	28760					-0.06337771872620124
SEQCCHQEP	9	Unmodified	_SEQCCHQEP_					0	0	0			REV__ENSG00000162063|ENST00000397066|CCNF	REV__ENSG00000162063|ENST00000397066|CCNF	MULTI-SECPEP	HCT116MG_D190212_S2	2	530.798828125	2	530.694766	1059.37498	0.45642	0.00024222	-0.75246	-0.00039933	-0.29605	-0.00015711	531.1958871223109	17.196	0.2082	16.847	16.717	16.925	-0.34933					5	3	2	0	0	0	0.2622	1	5866	5866		8.5933	0.68312	1	1354600	+		29890	12868	18863	18963	28761	28761					-0.15233350893140596
SEQDRAYHP	9	Unmodified	_SEQDRAYHP_					0	0	0		ENST00000531863.5_1_11:66276783-66276999:+|nuORF	ENST00000531863.5_1_11:66276783-66276999:+|nuORF	ENST00000531863.5_1_11:66276783-66276999:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	551.749755859375	2	551.749244	1101.48394	0.12673	6.9926E-05	0.67029	0.00036983	0.79702	0.00043976	551.7496448268557	18.293	0.41788	17.93	17.643	18.061	-0.36325					10	7	2	0	0	0	0.39921	1	6315	6315		22.658	22.658	1	5787800			29891	8627	18864	18964	28762	28762					-0.06274680606998118
SEQEHFLIV	9	Unmodified	_SEQEHFLIV_					0	0	0		ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000506157.1_1_4:2889441-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	551.3224487304688	2	551.282389	1100.55022	0.31406	0.00017313	-0.11121	-6.1308E-05	0.20285	0.00011183	551.2820745661423	50.902	0.20667	50.902	50.781	50.988	0					8	3	3	0	0	0	0.054053	1	19441	19441		85.642	49.514	1	16784000			29892	57	18865	18965	28763	28763					0.003971352350617963
SEQEHFLIV	9	Unmodified	_SEQEHFLIV_					0	0	0		ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000506157.1_1_4:2889441-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	551.7847290039062	2	551.282389	1100.55022	0.35332	0.00019478	0.27735	0.0001529	0.63067	0.00034768	551.2823790194418	51.014	0.41394	50.836	50.655	51.069	-0.17868					20	7	4	0	0	0	0.011082	2	19557	19557;19564		110.67	66.816	1	123730000			29893	57	18865	18965	28764;28765	28764					0.003971352350617963
SEQEHFLIV	9	Unmodified	_SEQEHFLIV_					0	0	0		ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000506157.1_1_4:2889441-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	551.2826538085938	2	551.282389	1100.55022	0.38879	0.00021434	0.20053	0.00011055	0.58933	0.00032489	551.2823475415712	51.247	0.57685	50.936	50.7	51.277	-0.31166					22	10	3	0	0	0	0.02327	3	19329	19320;19329;19382		93.166	54.99	1	37117000			29894	57	18865	18965	28766;28767;28768	28767					0.003971352350617963
SEQEHFLIV	9	Unmodified	_SEQEHFLIV_					0	0	0		ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ADD1|p.K718Rfs*11|2|0.23|ENSG00000087274|chr4:2928458-2928458|A/-|frameshift_variant;ENSG00000087274|ENST00000683351|ADD1;ENST00000506157.1_1_4:2889441-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000508684.5_1_4:2877642-2900342:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	551.2826538085938	2	551.282389	1100.55022	0.49441	0.00027256	0.011814	6.513E-06	0.50622	0.00027907	551.2822522676367	51.289	0.3126	50.938	50.733	51.046	-0.35028					12	5	3	0	0	0	0.040027	1	19080	19080		79.596	43.469	1	9660600			29895	57	18865	18965	28769	28769					0.003971352350617963
SEQESPLRL	9	Unmodified	_SEQESPLRL_					0	0	0			REV__UBE2E2|p.P95Qfs*43|1|0.34|ENSG00000182247|chr3:23499660-23499660|C/-|frameshift_variant	REV__UBE2E2|p.P95Qfs*43|1|0.34|ENSG00000182247|chr3:23499660-23499660|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	531.2651977539062	2	529.77747	1057.54039	0.30567	0.00016194	0.18729	9.9222E-05	0.49296	0.00026116	529.7776097171759	20.851	0.26017	20.886	20.714	20.975	0.034473					10	4	3	0	0	0	0.53593	1	7214	7214		14.838	0	1	5509500	+		29896	18034	18866	18966	28770	28770					0.01391947229649304
SEQETLVRP	9	Unmodified	_SEQETLVRP_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-7|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-9|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	529.7775268554688	2	529.77747	1057.54039	0.26174	0.00013867	-0.091223	-4.8328E-05	0.17052	9.0338E-05	529.7773347015079	29.844	0.81934	29.844	29.373	30.192	0					30	15	3	0	0	0	0.026272	1	10892	10892		90.135	30.061	1	14872000			29897	3368	18867	18967	28771	28771					0.013919472296720414
SEQETLVRP	9	Unmodified	_SEQETLVRP_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-7|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-9|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.5650024414062	2	529.77747	1057.54039	0.12553	6.6502E-05	-0.37731	-0.00019989	-0.25178	-0.00013339	529.7772340798306	30.352	0.92639	30.068	29.409	30.335	-0.28453					40	17	3	0	0	0	0.0064416	3	11136	11014;11136;11261		125.04	55.933	1	142970000			29898	3368	18867	18967	28772;28773;28774	28773					0.013919472296720414
SEQETLVRP	9	Unmodified	_SEQETLVRP_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-7|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-9|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	529.7776489257812	2	529.77747	1057.54039	0.42831	0.00022691	-0.27356	-0.00014493	0.15474	8.198E-05	529.7772586374698	30.439	1.2327	30.189	29.279	30.511	-0.24946					96	36	3	0	0	0	0.0047539	2	11098	10900;11098		139.78	57.253	1	108700000			29899	3368	18867	18967	28775;28776	28776					0.013919472296720414
SEQETLVRP	9	Unmodified	_SEQETLVRP_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-7|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-9|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	529.7775268554688	2	529.77747	1057.54039	0.40499	0.00021455	-0.22376	-0.00011854	0.18123	9.601E-05	529.7772729799736	30.495	1.0789	30.131	29.382	30.461	-0.36416					103	45	3	0	0	0	0.016412	3	11106	10838;10923;11106		100.09	28.168	1	49480000			29900	3368	18867	18967	28777;28778;28779	28779					0.013919472296720414
SEQGDVKLA	9	Unmodified	_SEQGDVKLA_					0	0	0		ENST00000487962.5_1_2:242435079-242438851:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25;STK26|p.N234Tfs*22|1|0.28|ENSG00000134602|chrX:132069577-132069577|A/-|frameshift_variant;nc|ENSG00000134602|Q9P289-2|STK26;nc|ENSG00000134602|Q9P289-3|STK26;ENSG00000134602|ENST00000394334|STK26	ENST00000487962.5_1_2:242435079-242438851:-|nuORF	ENST00000487962.5_1_2:242435079-242438851:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	473.7456359863281	2	473.745639	945.476725	0.41535	0.00019677	-0.12261	-5.8088E-05	0.29274	0.00013868	473.74551201585746	25.997	0.46712	25.628	25.291	25.758	-0.36914					16	8	2	0	0	0	0.12421	1	9322	9322		53.404	11.448	1	103390000			29901	2482	18868	18968	28780	28780					0.0018058679256682808
SEQGLAKAVA	10	Unmodified	_SEQGLAKAVA_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	HCT116MG_D190212_S2	2	487.26934814453125	2	487.269281	972.52401	0.25705	0.00012525	-0.29167	-0.00014212	-0.034617	-1.6868E-05	487.26893270367896	27.056	0.36872	26.703	26.45	26.818	-0.35254					11	6	3	0	0	0	0.11595	1	9836	9836		70.929	30.689	1	12494000			29902	5557	18869	18969	28781	28781					0.03664866063559202
SEQGLAKAVA	10	Unmodified	_SEQGLAKAVA_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	HCT116MG_D190212_S3	3	487.2692565917969	2	487.269281	972.52401	0.20952	0.00010209	-0.029847	-1.4544E-05	0.17968	8.755E-05	487.26913041533624	26.852	0.41638	26.701	26.409	26.825	-0.15138					12	7	3	0	0	0	0.035798	1	9660	9660		97.741	42.238	1	6000000			29903	5557	18869	18969	28782	28782					0.03664866063559202
SEQGLAKAVA	10	Unmodified	_SEQGLAKAVA_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	487.269281	972.52401	-0.070241	-3.4226E-05	0.10368	5.052E-05	0.033439	1.6294E-05	487.2693692466673	27.069	0.20802	26.757	26.639	26.847	-0.3114	0.03708	0.00015984	NaN	97.741	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2024800			29904	5557	18869	18969							0.03664866063559202
SEQHIPVSA	9	Unmodified	_SEQHIPVSA_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-MSMS	HCT116MG_D190212_S1	1	484.2459411621094	2	484.245806	966.47706	0.23469	0.00011365	0.36663	0.00017754	0.60132	0.00029119	484.24587482640453	26.631	0.52091	26.631	26.449	26.97	0					15	9	3	0	0	0	0.012596	1	9634	9634		106.94	28.791	1	17420000			29905	725	18870	18970	28783	28783					-0.007519934875631407
SEQHIPVSA	9	Unmodified	_SEQHIPVSA_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-MSMS	HCT116MG_D190212_S2	2	967.4859619140625	1	967.484336	966.47706	0.60369	0.00058406	0.21132	0.00020445	0.81501	0.00078851	967.4849488186763	26.969	0.20972	26.617	26.503	26.713	-0.35254					5	3	2	0	0	0	0.068828	1	9799	9799		65.474	28.967	1	7399300			29906	725	18870	18970	28784	28784					-0.007519934875631407
SEQHIPVSA	9	Unmodified	_SEQHIPVSA_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-MSMS	HCT116MG_D190212_S3	3	484.2462463378906	2	484.245806	966.47706	0.2433	0.00011782	0.24676	0.00011949	0.49006	0.00023731	484.2458595631857	26.843	0.5729	26.694	26.515	27.088	-0.14924					19	10	3	0	0	0	0.0096523	2	9640	9620;9640		114.2	46.121	1	45498000			29907	725	18870	18970	28785;28786	28786					-0.007519934875631407
SEQHIPVSA	9	Unmodified	_SEQHIPVSA_					0	0	0		nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1335Yfs*4|2|0.43|ENSG00000088387|chr13:98850057-98850058|-/A|frameshift_variant;DOCK9|p.N1450Mfs*6|1|0.28|ENSG00000088387|chr13:98831683-98831683|T/-|frameshift_variant;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-MSMS	HCT116MG_D190212_S4	4	484.24603271484375	2	484.245806	966.47706	0.093806	4.5425E-05	0.59613	0.00028868	0.68994	0.0003341	484.24631153211084	27.028	0.46764	26.716	26.379	26.847	-0.3114					15	8	3	0	0	0	0.0068427	1	9661	9661		121.53	36.262	1	13290000			29908	725	18870	18970	28787	28787					-0.007519934875631407
SEQHVQQPP	9	Unmodified	_SEQHVQQPP_					0	0	0		nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	nc|ENSG00000143437|P27540-2|ARNT	nc|ENSG00000143437|P27540-2|ARNT	MSMS	HCT116MG_D190212_S4	4	525.2557983398438	2	525.254163	1048.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.191	1	18.016	17.516	18.516	-0.17501								0	0	0	0.64932	1	6089	6089		21.537	6.6987	1				29909	3812	18871	18971	28788	28788					-0.02853492601616381
SEQIMKTGA	9	Oxidation (M)	_SEQIM(Oxidation (M))KTGA_		SEQIM(1)KTGA		SEQIM(44)KTGA	0	0	1		BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	490.7400207519531	2	490.739499	979.464446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.994	1	16.994	16.494	17.494	0								0	0	0	0.2496	1	5756	5756		43.772	11.655	1				29910	251	18872	18972	28789	28789		2			-0.026107729421028125
SEQIMKTGA	9	Oxidation (M)	_SEQIM(Oxidation (M))KTGA_		SEQIM(1)KTGA		SEQIM(90)KTGA	0	0	1		BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	490.7395324707031	2	490.739499	979.464446	0.27837	0.00013661	0.066782	3.2772E-05	0.34515	0.00016938	490.73942018688007	17.353	0.52216	17.004	16.769	17.291	-0.34933					17	9	3	0	0	0	0.026272	1	5907	5907		90.135	34.632	1	11985000			29911	251	18872	18972	28790	28790		2			-0.026107729421028125
SEQIMKTGA	9	Oxidation (M)	_SEQIM(Oxidation (M))KTGA_		SEQIM(1)KTGA		SEQIM(63)KTGA	0	0	1		BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	490.7395935058594	2	490.739499	979.464446	0.029427	1.4441E-05	0.52777	0.000259	0.5572	0.00027344	490.73958620867006	16.396	0.67615	16.481	16.237	16.913	0.085424					23	12	3	0	0	0	0.07468	1	5437	5437		63.227	25.052	1	5434900			29912	251	18872	18972	28791	28791		2			-0.026107729421028125
SEQIMKTGA	9	Unmodified	_SEQIMKTGA_					0	0	0		BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	482.7417297363281	2	482.742042	963.469531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.265	1	24.265	23.765	24.765	0								0	0	0	0.089458	1	8679	8679		59.052	19.103	1				29913	251	18872	18973	28792	28792					-0.013664690794939816
SEQIMKTGA	9	Unmodified	_SEQIMKTGA_					0	0	0		BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7417907714844	2	482.742042	963.469531	0.22107	0.00010672	0.29636	0.00014306	0.51743	0.00024979	482.7420136979007	24.694	0.41619	24.314	24.135	24.551	-0.38003					14	7	3	0	0	0	0.0096585	1	8853	8853		114.19	54.113	1	91662000			29914	251	18872	18973	28793	28793					-0.013664690794939816
SEQIMKTGA	9	Unmodified	_SEQIMKTGA_					0	0	0		BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	964.4775390625	1	964.476808	963.469531	0.66512	0.00064149	0.11048	0.00010656	0.7756	0.00074805	964.4770450463162	24.683	0.20859	24.303	24.187	24.396	-0.38003					5	3	2	0	0	0	0.0034268	1	8869	8869		179.28	101.13	1	11602000			29915	251	18872	18973	28794	28794					-0.013664690794939816
SEQIMKTGA	9	Unmodified	_SEQIMKTGA_					0	0	0		BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2436218261719	2	482.742042	963.469531	0.075849	3.6616E-05	0.16458	7.9449E-05	0.24043	0.00011606	482.7420608124941	24.243	0.52032	24.181	23.999	24.519	-0.061449					24	9	4	0	0	0	0.031831	1	8588	8588		84.522	30.947	1	88795000			29916	251	18872	18973	28795	28795					-0.013664690794939816
SEQIMKTGA	9	Unmodified	_SEQIMKTGA_					0	0	0		BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	964.4759521484375	1	964.476808	963.469531	0.50441	0.00048649	-0.072965	-7.0373E-05	0.43144	0.00041612	964.4765496619607	24.259	0.20796	24.198	24.051	24.259	-0.061447					6	3	2	0	0	0	0.0015154	1	8609	8609		189.73	104.09	1	3572600			29917	251	18872	18973	28796	28796					-0.013664690794939816
SEQIMKTGA	9	Unmodified	_SEQIMKTGA_					0	0	0		BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	BAX|p.R89Efs*44|1|0.24|ENSG00000087088|chr19:48956224-48956224|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	482.74139404296875	2	482.742042	963.469531	0.33295	0.00016073	0.14358	6.9313E-05	0.47654	0.00023004	482.74191976337954	24.532	0.31124	24.263	24.082	24.393	-0.26881					13	5	3	0	0	0	0.01386	1	8638	8638		103.82	49.05	1	26152000			29918	251	18872	18973	28797	28797					-0.013664690794939816
SEQKEPFGDAK	11	Unmodified	_SEQKEPFGDAK_					0	0	0			REV__MAST4|p.G1923Qfs*4|1|0.33|ENSG00000069020|chr5:67164945-67164946|GG/-|frameshift_variant	REV__MAST4|p.G1923Qfs*4|1|0.33|ENSG00000069020|chr5:67164945-67164946|GG/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	618.2088623046875	2	618.298767	1234.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.852	1	14.935	14.435	15.435	0.083271								0	0	0	0.93295	1	4814	4814		15.248	3.7538	1		+		29919	10742	18873	18974	28798	28798					-0.024927024327553227
SEQKQQFSP	9	Unmodified	_SEQKQQFSP_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7631225585938	2	539.76182	1077.50909	0.56352	0.00030417	0.10462	5.6468E-05	0.66813	0.00036063	539.7619784020943	25.076	0.46754	24.701	24.504	24.972	-0.37521					11	8	2	0	0	0	0.34272	1	9087	9087		26.268	0.86883	1	8502500			29920	4640	18874	18975	28799	28799					-0.026566258044113056
SEQKQQFSP	9	Unmodified	_SEQKQQFSP_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7621459960938	2	539.76182	1077.50909	0.47942	0.00025877	0.3888	0.00020986	0.86822	0.00046863	539.7619329112467	24.574	0.57244	24.49	24.237	24.809	-0.083694					16	10	2	0	0	0	0.030039	1	8756	8756		86.332	34.702	1	3007600			29921	4640	18874	18975	28800	28800					-0.026566258044113056
SEQKQQFSP	9	Unmodified	_SEQKQQFSP_					0	0	0		ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	ENSG00000163840|ENST00000296161|DTX3L	MSMS	HCT116MG_D190212_S4	4	539.761962890625	2	539.76182	1077.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.045	1	24.765	24.265	25.265	-0.27958								0	0	0	0.47756	1	8856	8856		29.841	8.2504	1				29922	4640	18874	18975	28801	28801					-0.026566258044113056
SEQKWRRC	8	Unmodified	_SEQKWRRC_					0	0	0			REV__ENST00000511799.5_3_5:60095008-60139355:-|nuORF	REV__ENST00000511799.5_3_5:60095008-60139355:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	364.51690673828125	3	364.850425	1091.52945	0.052323	1.909E-05	-3.369	-0.0012292	-3.3167	-0.0012101	364.84925633808706	20.61	0.62534	20.61	20.227	20.852	0					22	9	4	0	0	0	0.64404	1	7168	7168		22.736	4.8731	1	25295000	+		29923	16185	18875	18976	28802	28802					-0.012657336256097551
SEQLDLPVRQA	11	Unmodified	_SEQLDLPVRQA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant;IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENST00000533680.1_1_11:9424848-9424938:+|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S2	2	628.9794311523438	2	628.335684	1254.65681	0.29517	0.00018547	0.7439	0.00046742	1.0391	0.00065289	628.3361846762649	38.078	0.31012	37.985	37.753	38.063	-0.09301					6	5	2	0	0	0	0.053166	2	14289	14289;14320		125.18	86.566	1	32907000			29924	6381	18876	18977	28803;28804	28803					0.03967265729579594
SEQLDLPVRQA	11	Unmodified	_SEQLDLPVRQA_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;IPO7|p.D430Mfs*6|1|0.18|ENSG00000205339|chr11:9425208-9425208|A/-|frameshift_variant;IPO7|p.M511Cfs*3|1|0.19|ENSG00000205339|chr11:9429134-9429134|A/-|frameshift_variant;ENST00000533680.1_1_11:9424848-9424938:+|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	HCT116MG_D190212_S3	3	628.837646484375	2	628.335684	1254.65681	0.42819	0.00026905	0.25	0.00015708	0.67819	0.00042613	628.8370815287606	38.316	0.20714	38.014	37.885	38.092	-0.30137					5	3	2	0	0	0	0.38536	2	14214	14214;14220		74.772	45.335	1	6613500			29925	6381	18876	18977	28805;28806	28805					0.03967265729579594
SEQLHNVTA	9	Unmodified	_SEQLHNVTA_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	499.7491455078125	2	499.748713	997.482873	0.31293	0.00015639	-0.47391	-0.00023684	-0.16098	-8.045E-05	499.74887574266074	23.458	0.26106	23.458	23.262	23.523	0					6	4	2	0	0	0	0.1535	1	8374	8374		47.594	21.326	1	4092000			29926	5361	18877	18978	28807	28807					-0.015968949759098905
SEQLHNVTA	9	Unmodified	_SEQLHNVTA_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	499.7488708496094	2	499.748713	997.482873	0.55445	0.00027708	-0.072628	-3.6296E-05	0.48182	0.00024079	499.7485760138606	23.917	0.41589	23.534	23.299	23.715	-0.38324					16	7	4	0	0	0	0.0096585	1	8550	8550		114.19	55.508	1	56318000			29927	5361	18877	18978	28808	28808					-0.015968949759098905
SEQLHNVTA	9	Unmodified	_SEQLHNVTA_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	HCT116MG_D190212_S3	3	499.7486877441406	2	499.748713	997.482873	0.44864	0.00022421	-0.010529	-5.2616E-06	0.43811	0.00021894	499.74862734438244	23.461	0.41677	23.422	23.239	23.656	-0.03968					19	7	4	0	0	0	0.0039465	1	8285	8285		151.48	68.051	1	46195000			29928	5361	18877	18978	28809	28809					-0.015968949759098905
SEQLHNVTA	9	Unmodified	_SEQLHNVTA_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1;VCPIP1|p.K1108Nfs*37|1|0.15|ENSG00000175073|chr8:66634846-66634846|T/-|frameshift_variant	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	HCT116MG_D190212_S4	4	499.74871826171875	2	499.748713	997.482873	0.39017	0.00019499	-0.0038139	-1.906E-06	0.38636	0.00019308	499.74861479704606	23.701	0.41602	23.454	23.324	23.74	-0.24775					11	7	2	0	0	0	0.0060369	1	8316	8316		128.57	63.099	1	21676000			29929	5361	18877	18978	28810	28810					-0.015968949759098905
SEQLVLHT	8	Unmodified	_SEQLVLHT_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MSMS	HCT116MG_D190212_S4	4	463.75079345703125	2	463.750724	925.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.232	1	25.935	25.435	26.435	-0.29755								0	0	0	0.72655	1	9335	9335		28.487	0	1				29930	6646	18878	18979	28811	28811					0.021171945178025453
SEQNGAKIVA	10	Unmodified	_SEQNGAKIVA_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	HCT116MG_D190212_S3	3	508.77203369140625	2	508.772188	1015.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.997	1	22.976	22.476	23.476	-0.020777								0	0	0	0.0069877	1	8097	8097		128.57	82.552	1				29931	2231	18879	18980	28812	28812					0.022679645752418764
SEQNGAKIVA	10	Unmodified	_SEQNGAKIVA_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-MSMS	HCT116MG_D190212_S4	4	508.7720031738281	2	508.772188	1015.52982	0.0020894	1.063E-06	-0.50053	-0.00025466	-0.49844	-0.00025359	508.7721100242612	23.285	0.31421	23.037	22.905	23.22	-0.24775					10	5	3	0	0	0	0.14359	1	8156	8156		65.474	34.837	1	4628000			29932	2231	18879	18980	28813	28813					0.022679645752418764
SEQPHIYIP	9	Unmodified	_SEQPHIYIP_					0	0	0		nc|ENSG00000147394|O15231-9|ZNF185;nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185	nc|ENSG00000147394|O15231-9|ZNF185	nc|ENSG00000147394|O15231-9|ZNF185	MULTI-MSMS	HCT116MG_D190212_S2	2	542.276611328125	2	542.277106	1082.53966	0.72696	0.00039422	-0.18227	-9.8841E-05	0.54469	0.00029537	542.2768350460389	44.663	0.57475	44.578	44.376	44.951	-0.084797					16	10	2	0	0	0	0.12205	1	16990	16990		53.833	7.8118	1	20050000			29933	3982	18880	18981	28814	28814					0.0016915258061089844
SEQPHIYIP	9	Unmodified	_SEQPHIYIP_					0	0	0		nc|ENSG00000147394|O15231-9|ZNF185;nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185	nc|ENSG00000147394|O15231-9|ZNF185	nc|ENSG00000147394|O15231-9|ZNF185	MSMS	HCT116MG_D190212_S3	3	542.2776489257812	2	542.277106	1082.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.009	1	44.7	44.2	45.2	-0.30927								0	0	0	0.27468	1	16840	16840		41.956	15.072	1				29934	3982	18880	18981	28815	28815					0.0016915258061089844
SEQPTLVTA	9	Unmodified	_SEQPTLVTA_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	945.48828125	1	945.488753	944.481476	0.8449	0.00079884	-0.29595	-0.00027981	0.54895	0.00051903	945.4883634485923	34.753	0.46534	34.595	34.348	34.813	-0.15834					15	8	2	0	0	0	0.047849	1	12919	12919		75.761	0.83183	1	72362000			29935	2464	18881	18982	28816	28816					0.007014709353370563
SEQPTLVTA	9	Unmodified	_SEQPTLVTA_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	945.48876953125	1	945.488753	944.481476	0.59933	0.00056666	-0.037267	-3.5235E-05	0.56206	0.00053142	945.4886228916715	34.935	0.57127	34.638	34.388	34.959	-0.29707					29	10	4	0	0	0	0.047849	1	12837	12837		75.761	0.83183	1	48413000			29936	2464	18881	18982	28817	28817					0.007014709353370563
SEQPTLVTA	9	Unmodified	_SEQPTLVTA_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2480163574219	2	473.248015	944.481476	0.13799	6.5305E-05	0.16402	7.7621E-05	0.30201	0.00014293	473.248074507047	34.867	0.62329	34.57	34.388	35.011	-0.29707					16	11	2	0	0	0	0.12205	1	12879	12879		53.833	13.875	1	8722600			29937	2464	18881	18982	28818	28818					0.007014709353370563
SEQPTLVTA	9	Unmodified	_SEQPTLVTA_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	945.4887084960938	1	945.488753	944.481476	0.59852	0.00056589	0.012483	1.1803E-05	0.611	0.00057769	945.4887095536589	35.042	0.46449	34.656	34.441	34.905	-0.38605					20	8	3	0	0	0	0.026999	1	12788	12788		89.401	20.296	1	18345000			29938	2464	18881	18982	28819	28819					0.007014709353370563
SEQPTLVTA	9	Unmodified	_SEQPTLVTA_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	473.24822998046875	2	473.248015	944.481476	0.3409	0.00016133	-0.012027	-5.6916E-06	0.32887	0.00015564	473.24798092809465	35.058	0.46449	34.672	34.441	34.905	-0.38606					12	8	2	0	0	0	0.077982	2	12831	12820;12831		62.573	16.873	1	6956600			29939	2464	18881	18982	28820;28821	28821					0.007014709353370563
SEQPTLVTA	9	Unmodified	_SEQPTLVTA_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	473.248015	944.481476	0.4221	0.00019976	-0.67287	-0.00031843	-0.25077	-0.00011868	473.24777022952753	34.757	0.31055	34.599	34.399	34.709	-0.15834	-0.014585	-0.00063842	NaN	62.573	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11500000			29940	2464	18881	18982							0.007014709353370563
SEQQALHTV	9	Unmodified	_SEQQALHTV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MSMS	HCT116MG_D190212_S1	1	506.7566833496094	2	506.756538	1011.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.262	1	26.262	25.762	26.762	0								0	0	0	0.1107	1	9482	9482		53.833	15.657	1				29941	1607	18882	18983	28822	28822					-0.006766084588662125
SEQQALHTV	9	Unmodified	_SEQQALHTV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	HCT116MG_D190212_S2	2	506.75653076171875	2	506.756538	1011.49852	0.3298	0.00016713	-0.15135	-7.6696E-05	0.17845	9.043E-05	506.75642253641115	26.567	0.36295	26.206	25.972	26.335	-0.36164					11	6	2	0	0	0	0.00446	1	9622	9622		143.91	29.708	1	47230000			29942	1607	18882	18983	28823	28823					-0.006766084588662125
SEQQALHTV	9	Unmodified	_SEQQALHTV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	HCT116MG_D190212_S3	3	506.75634765625	2	506.756538	1011.49852	0.39639	0.00020087	-0.44294	-0.00022446	-0.046553	-2.3591E-05	506.75634934993485	26.306	0.46896	26.157	25.942	26.411	-0.14924					13	8	2	0	0	0	0.00446	1	9426	9426		143.91	29.708	1	20298000			29943	1607	18882	18983	28824	28824					-0.006766084588662125
SEQQLLTQ	8	Unmodified	_SEQQLLTQ_					0	0	0			REV__ENSG00000186854|ENST00000409520|TRABD2A;REV__ENSG00000269113|ENST00000606738|TRABD2B	REV__ENSG00000269113|ENST00000606738|TRABD2B	MSMS	HCT116MG_D190212_S4	4	473.7449951171875	2	473.745639	945.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.743	1	25.452	24.952	25.952	-0.29022								0	0	0	0.71912	1	9137	9137		29.082	1.4528	1		+		29944	13899;14434	18883	18984	28825	28825					0.0018058679257819676
SEQREFVMA	9	Unmodified	_SEQREFVMA_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	HCT116MG_D190212_S1	1	548.7582397460938	2	548.758223	1095.50189	0.38052	0.00020881	-0.25088	-0.00013767	0.12964	7.1141E-05	548.7577655938245	36.548	0.26157	36.548	36.417	36.679	0					7	4	2	0	0	0	0.051033	1	13635	13635		74.2	41.894	1	20405000			29945	3945	18884	18985	28826	28826					-0.042036816764948526
SEQREFVMA	9	Unmodified	_SEQREFVMA_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	HCT116MG_D190212_S2	2	1096.5101318359375	1	1096.50917	1095.50189	0.74781	0.00081998	0.25625	0.00028098	1.0041	0.001101	1096.5091727561717	36.625	0.207	36.51	36.395	36.602	-0.11478					6	3	2	0	0	0	0.0096523	1	13736	13736		114.2	60.369	1	16096000			29946	3945	18884	18985	28827	28827					-0.042036816764948526
SEQREFVMA	9	Unmodified	_SEQREFVMA_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MSMS	HCT116MG_D190212_S2	2	548.75830078125	2	548.758223	1095.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.598	1	36.483	35.983	36.983	-0.11478								0	0	0	0.0019432	1	13690	13690		125.53	75.596	1				29947	3945	18884	18985	28828	28828					-0.042036816764948526
SEQREFVMA	9	Unmodified	_SEQREFVMA_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	HCT116MG_D190212_S3	3	548.7584228515625	2	548.758223	1095.50189	0.37882	0.00020788	0.18239	0.00010009	0.56121	0.00030797	548.7582538038499	36.836	0.51998	36.535	36.353	36.873	-0.30113					28	9	4	0	0	0	0.0050238	1	13609	13609		137.42	97.466	1	159020000			29948	3945	18884	18985	28829	28829					-0.042036816764948526
SEQREFVMA	9	Unmodified	_SEQREFVMA_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	HCT116MG_D190212_S3	3	1096.5084228515625	1	1096.50917	1095.50189	0.34277	0.00037585	-0.19444	-0.00021321	0.14833	0.00016264	1096.5093916806989	36.836	0.25967	36.535	36.405	36.665	-0.30113					7	4	2	0	0	0	0.0046822	1	13634	13634		140.63	78.06	1	6013800			29949	3945	18884	18985	28830	28830					-0.042036816764948526
SEQREFVMA	9	Unmodified	_SEQREFVMA_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	HCT116MG_D190212_S4	4	548.758544921875	2	548.758223	1095.50189	0.52286	0.00028692	0.066208	3.6332E-05	0.58906	0.00032325	548.7581775846838	36.978	0.49013	36.593	36.383	36.873	-0.38486					22	9	4	0	0	0	0.0096523	1	13542	13542		114.2	74.244	1	55096000			29950	3945	18884	18985	28831	28831					-0.042036816764948526
SEQREFVMA	9	Unmodified	_SEQREFVMA_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	HCT116MG_D190212_S4	4	1096.509765625	1	1096.50917	1095.50189	0.51098	0.00056029	-0.47111	-0.00051658	0.039866	4.3713E-05	1096.5080523797344	36.972	0.19674	36.588	36.487	36.684	-0.38486					5	3	2	0	0	0	0.014023	1	13573	13573		103.42	44.741	1	2188000			29951	3945	18884	18985	28832	28832					-0.042036816764948526
SEQREFVMA	9	Oxidation (M)	_SEQREFVM(Oxidation (M))A_		SEQREFVM(1)A		SEQREFVM(46)A	0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	HCT116MG_D190212_S3	3	556.7559204101562	2	556.755681	1111.49681	0.54221	0.00030188	-0.80503	-0.00044821	-0.26282	-0.00014633	556.7552907571494	28.849	0.57237	28.627	28.421	28.994	-0.22195					20	10	3	0	0	0	0.16285	1	10453	10453		45.74	16.658	1	15089000			29952	3945	18884	18986	28833	28833		88			-0.05447985539126421
SEQREFVMA	9	Oxidation (M)	_SEQREFVM(Oxidation (M))A_		SEQREFVM(1)A		SEQREFVM(86)A	0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	HCT116MG_D190212_S4	4	556.7559814453125	2	556.755681	1111.49681	0.31776	0.00017691	-0.46883	-0.00026103	-0.15108	-8.4113E-05	556.7554418596665	29.066	0.46729	28.725	28.522	28.989	-0.34059					19	8	3	0	0	0	0.030039	1	10462	10462		86.332	51.93	1	10056000			29953	3945	18884	18986	28834	28834		88			-0.05447985539126421
SEQRQSVEA	9	Unmodified	_SEQRQSVEA_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MSMS	HCT116MG_D190212_S2	2	517.2492065429688	2	517.249077	1032.4836	0.26782	0.00013853	0.20973	0.00010848	0.47755	0.00024701	517.2491105029286	17.353	0.31364	17.004	16.873	17.187	-0.34933					8	5	2	0	0	0	0.016744	1	5925	5925		99.755	52.161	1	16316000			29954	3790	18885	18987	28835	28835					-0.03134100326838052
SEQRQSVEA	9	Unmodified	_SEQRQSVEA_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MATCH	HCT116MG_D190212_S1	1		2	517.249077	1032.4836	0.49357	0.0002553	-0.41408	-0.00021418	0.079486	4.1114E-05	517.2487125550641	16.968	0.15662	16.968	16.889	17.046	0	-0.017965	-0.0006026	NaN	99.755	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1439900			29955	3790	18885	18987							-0.03134100326838052
SEQSIQRL	8	Unmodified	_SEQSIQRL_					0	0	0		TEX11|p.L139*|1|0.42|ENSG00000120498|chrX:70853284-70853284|A/-|frameshift_variant;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11	TEX11|p.L139*|1|0.42|ENSG00000120498|chrX:70853284-70853284|A/-|frameshift_variant	TEX11|p.L139*|1|0.42|ENSG00000120498|chrX:70853284-70853284|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	480.76104736328125	2	480.759081	959.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.303	1	42.998	42.498	43.498	-0.30472								0	0	0	0.8837	1	16154	16154		11.64	0	1				29956	2700	18886	18988	28836	28836					0.022236954037680334
SEQSNPFCSY	10	Unmodified	_SEQSNPFCSY_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MSMS	HCT116MG_D190212_S4	4	581.2312622070312	2	581.229496	1160.44444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.363	1	38.982	38.482	39.482	-0.38055								0	0	0	0.92917	1	14460	14460		9.3831	4.1525	1				29957	6208	18887	18989	28837	28837					-0.12936568672739668
SEQTMSTTSPG	11	Unmodified	_SEQTMSTTSPG_					0	0	0		ENST00000589613.1_1_17:40761745-40762495:+|nuORF	ENST00000589613.1_1_17:40761745-40762495:+|nuORF	ENST00000589613.1_1_17:40761745-40762495:+|nuORF	MSMS	HCT116MG_D190212_S3	3	563.0742797851562	2	563.240061	1124.46557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.372	1	23.332	22.832	23.832	-0.03968								0	0	0	0.88801	1	8248	8248		21.537	5.3879	1				29958	9025	18888	18990	28838	28838					-0.09168603363877992
SEQTRVNAA	9	Unmodified	_SEQTRVNAA_					0	0	0		ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	MULTI-MSMS	HCT116MG_D190212_S2	2	488.2464599609375	2	488.246338	974.478122	0.25128	0.00012269	0.062296	3.0416E-05	0.31357	0.0001531	488.2463370435232	16.936	0.72964	16.594	16.36	17.09	-0.34186					33	13	5	0	0	0	0.0034669	1	5733	5733		163.69	86.862	1	179760000			29959	4854	18889	18991	28839	28839					-0.010137791186707545
SEQTRVNAA	9	Unmodified	_SEQTRVNAA_					0	0	0		ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	MULTI-MSMS	HCT116MG_D190212_S2	2	975.4859008789062	1	975.485399	974.478122	0.68739	0.00067053	0.034825	3.3972E-05	0.72221	0.00070451	975.4854558366675	16.936	0.26025	16.594	16.464	16.725	-0.34183					7	4	2	0	0	0	0.0060369	1	5741	5741		128.57	66	1	14274000			29960	4854	18889	18991	28840	28840					-0.010137791186707545
SEQTRVNAA	9	Unmodified	_SEQTRVNAA_					0	0	0		ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	MULTI-MSMS	HCT116MG_D190212_S3	3	488.2463684082031	2	488.246338	974.478122	0.089867	4.3877E-05	0.11314	5.524E-05	0.20301	9.9117E-05	488.24637062550676	15.918	0.25998	16.003	15.873	16.133	0.085423					7	4	2	0	0	0	0.064006	1	5261	5261		67.838	29.864	1	5201200			29961	4854	18889	18991	28841	28841					-0.010137791186707545
SEQVPLMSA	9	Oxidation (M)	_SEQVPLM(Oxidation (M))SA_		SEQVPLM(1)SA		SEQVPLM(42)SA	0	0	1		ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	MSMS	HCT116MG_D190212_S4	4	489.2344055175781	2	489.23405	976.453547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.491	1	31.121	30.621	31.621	-0.37026								0	0	0	0.27468	1	11431	11431		41.956	19.219	1				29962	1310	18890	18992	28842	28842		21			-0.03562175316403682
SEQVSHHPP	9	Unmodified	_SEQVSHHPP_					0	0	0		ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENSG00000006025|ENST00000007414|OSBPL7;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2;OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant;OSBPL1A|p.N883Mfs*4|1|0.46|ENSG00000141447|chr18:24166590-24166590|T/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	ENST00000579728.5_1_17:45885659-45892067:-|nuORF;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;ENSG00000130703|ENST00000313733|OSBPL2;OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-MSMS	HCT116MG_D190212_S1	1	509.7284851074219	2	509.241055	1016.46756	0.38119	0.00019412	1.2298	0.00062626	1.611	0.00082038	509.74331948756617	15.789	0.57265	15.789	15.484	16.056	0					23	10	4	0	0	0	0.020353	3	5240	5240;5290;5308		96.111	59.984	1	7309800			29963	1246;822;3096;3717	18891	18993	28843;28844;28845	28843					-0.04001761773088219
SEQVSHHPP	9	Unmodified	_SEQVSHHPP_					0	0	0		ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENSG00000006025|ENST00000007414|OSBPL7;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2;OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant;OSBPL1A|p.N883Mfs*4|1|0.46|ENSG00000141447|chr18:24166590-24166590|T/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	ENST00000579728.5_1_17:45885659-45892067:-|nuORF;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;ENSG00000130703|ENST00000313733|OSBPL2;OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2408142089844	2	509.241055	1016.46756	0.26015	0.00013248	1.0388	0.00052898	1.2989	0.00066146	509.7431615108862	16.013	1.4598	15.679	15.168	16.627	-0.33451					66	27	4	0	0	0	0.011082	3	5548	5320;5376;5548		110.67	77.889	1	44981000			29964	1246;822;3096;3717	18891	18993	28846;28847;28848	28848					-0.04001761773088219
SEQVSHHPP	9	Unmodified	_SEQVSHHPP_					0	0	0		ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENSG00000006025|ENST00000007414|OSBPL7;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;OSBPL6|p.F898Lfs*31|1|0.36|ENSG00000079156|chr2:178394428-178394428|T/-|frameshift_variant;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2;OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant;OSBPL1A|p.N883Mfs*4|1|0.46|ENSG00000141447|chr18:24166590-24166590|T/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A	ENST00000579728.5_1_17:45885659-45892067:-|nuORF;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;ENSG00000130703|ENST00000313733|OSBPL2;OSBPL1A|p.N793Kfs*2|1|0.5|ENSG00000141447|chr18:24170366-24170367|-/T|frameshift_variant	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MSMS	HCT116MG_D190212_S3	3	509.2412109375	2	509.241055	1016.46756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.686	1	14.766	14.266	15.266	0.079683								0	0	0	0.52331	1	4747	4747		27.629	10.687	1				29965	1246;822;3096;3717	18891	18993	28849	28849					-0.04001761773088219
SEQVTRWAA	9	Unmodified	_SEQVTRWAA_					0	0	0		ENST00000487266.1_1_21:27107719-27124637:+|nuORF;ENST00000419271.1_1_7:63353684-63354623:+|nuORF;ENSG00000154727|ENST00000400075|GABPA	ENST00000487266.1_1_21:27107719-27124637:+|nuORF	ENST00000487266.1_1_21:27107719-27124637:+|nuORF	MSMS	HCT116MG_D190212_S3	3	524.2644653320312	2	524.26453	1046.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.248	1	32.958	32.458	33.458	-0.29013								0	0	0	0.24671	1	12196	12196		43.982	9.5801	1				29966	4227	18892	18994	28850	28850					-0.006889022219411345
SEQVTRWAA	9	Unmodified	_SEQVTRWAA_					0	0	0		ENST00000487266.1_1_21:27107719-27124637:+|nuORF;ENST00000419271.1_1_7:63353684-63354623:+|nuORF;ENSG00000154727|ENST00000400075|GABPA	ENST00000487266.1_1_21:27107719-27124637:+|nuORF	ENST00000487266.1_1_21:27107719-27124637:+|nuORF	MSMS	HCT116MG_D190212_S3	3	524.308837890625	2	524.26453	1046.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.278	1	32.988	32.488	33.488	-0.29013								0	0	0	0.34207	1	12208	12208		37.075	10.807	1				29967	4227	18892	18994	28851	28851					-0.006889022219411345
SERAGQLEA	9	Unmodified	_SERAGQLEA_					0	0	0		HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	480.7414245605469	2	480.740888	959.467223	0.16491	7.9279E-05	0.40312	0.0001938	0.56803	0.00027308	480.7410724200909	22.3	0.31319	22.3	22.115	22.428	0					10	5	3	0	0	0	0.014023	1	7896	7896		103.42	3.0479	1	10292000			29968	1602	18893	18995	28852	28852					-0.01413181492955573
SERAGQLEA	9	Unmodified	_SERAGQLEA_					0	0	0		HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	480.74078369140625	2	480.740888	959.467223	0.20539	9.8742E-05	0.06791	3.2647E-05	0.2733	0.00013139	480.74084930227673	22.774	0.41611	22.388	22.258	22.674	-0.3852					14	7	3	0	0	0	0.0050238	1	8086	8086		137.42	41.139	1	64460000			29969	1602	18893	18995	28853	28853					-0.01413181492955573
SERAGQLEA	9	Unmodified	_SERAGQLEA_					0	0	0		HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	960.4751586914062	1	960.4745	959.467223	0.63355	0.00060851	0.093638	8.9937E-05	0.72719	0.00069844	960.4744176750171	22.774	0.2082	22.388	22.258	22.466	-0.3852					5	3	2	0	0	0	0.0158	1	8110	8110		100.71	40.635	1	10130000			29970	1602	18893	18995	28854	28854					-0.01413181492955573
SERAGQLEA	9	Unmodified	_SERAGQLEA_					0	0	0		HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	480.74139404296875	2	480.740888	959.467223	0.19868	9.5514E-05	0.07336	3.5267E-05	0.27204	0.00013078	480.7408935220023	22.171	0.46878	22.172	21.99	22.459	0.00074577					21	8	4	0	0	0	0.011082	1	7748	7748		110.67	25.403	1	52482000			29971	1602	18893	18995	28855	28855					-0.01413181492955573
SERAGQLEA	9	Unmodified	_SERAGQLEA_					0	0	0		HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	960.4760131835938	1	960.4745	959.467223	0.66765	0.00064126	0.093778	9.0071E-05	0.76143	0.00073133	960.4746432981322	22.171	0.20825	22.172	22.042	22.25	0.00074577					5	3	2	0	0	0	0.021544	1	7777	7777		94.909	34.835	1	3324800			29972	1602	18893	18995	28856	28856					-0.01413181492955573
SERAGQLEA	9	Unmodified	_SERAGQLEA_					0	0	0		HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant;HOOK2|p.A624Hfs*8|1|0.25|ENSG00000095066|chr19:12763736-12763736|C/-|frameshift_variant;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	HOOK2|p.L431*|1|0.31|ENSG00000095066|chr19:12767829-12767829|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	480.7412109375	2	480.740888	959.467223	0.22479	0.00010806	-0.057706	-2.7742E-05	0.16708	8.0323E-05	480.74082088558606	22.498	0.36357	22.27	22.091	22.455	-0.22777					13	6	3	0	0	0	0.02327	1	7815	7815		93.166	15.016	1	15946000			29973	1602	18893	18995	28857	28857					-0.01413181492955573
SERDPIQPP	9	Unmodified	_SERDPIQPP_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S1	1	519.7636108398438	2	519.764363	1037.51417	0.50658	0.0002633	-1.1161	-0.00058009	-0.60949	-0.00031679	519.7636481598271	31.518	0.46848	31.518	31.18	31.648	0					10	8	2	0	0	0	0.59439	1	11636	11636		11.495	0.67078	1	3282100			29974	5231	18894	18996	28858	28858					-0.0030832194181584782
SERDPIQPP	9	Unmodified	_SERDPIQPP_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7644653320312	2	519.764363	1037.51417	0.51161	0.00026592	-0.16337	-8.4913E-05	0.34825	0.00018101	519.7641839768357	31.733	0.98309	31.484	30.681	31.665	-0.24883					26	18	2	0	0	0	0.047849	2	11678	11630;11678		75.761	42.316	1	32696000			29975	5231	18894	18996	28859;28860	28860					-0.0030832194181584782
SERDPIQPP	9	Unmodified	_SERDPIQPP_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S3	3	519.7646484375	2	519.764363	1037.51417	0.21751	0.00011305	-0.17909	-9.3087E-05	0.038411	1.9965E-05	519.7642336500853	31.808	0.7822	31.538	30.908	31.69	-0.27027					22	14	3	0	0	0	0.22946	1	11610	11610		38.176	9.094	1	8273400			29976	5231	18894	18996	28861	28861					-0.0030832194181584782
SERDPIQPP	9	Unmodified	_SERDPIQPP_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MSMS	HCT116MG_D190212_S4	4	519.7642822265625	2	519.764363	1037.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.979	1	31.604	31.104	32.104	-0.37529								0	0	0	0.64932	1	11629	11629		21.537	3.402	1				29977	5231	18894	18996	28862	28862					-0.0030832194181584782
SERELFNAV	9	Unmodified	_SERELFNAV_					0	0	0		RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	RIOK3|p.L482*|1|0.4|ENSG00000101782|chr18:23479412-23479412|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7725219726562	2	532.772188	1063.52982	0.44285	0.00023594	0.44861	0.00023901	0.89146	0.00047495	532.7723506884272	42.888	0.2561	42.818	42.741	42.997	-0.069984					5	4	2	0	0	0	0.5435	1	16282	16282		14.405	1.8738	1	20265000			29978	1806	18895	18997	28863	28863					0.0005996457523451681
SERGTEEDP	9	Unmodified	_SERGTEEDP_					0	0	0		ENST00000534417.1_1_11:43457781-43465839:+|nuORF;nc|ENSG00000052841|Q96AE7-2|TTC17	ENST00000534417.1_1_11:43457781-43465839:+|nuORF	ENST00000534417.1_1_11:43457781-43465839:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	509.74273681640625	2	510.217443	1018.42033	0.19082	9.7357E-05	-4.4237	-0.002257	-4.2329	-0.0021597	510.71516162289805	15.085	0.15595	15.168	15.09	15.246	0.083271					4	2	2	0	0	0	0.57626	1	4921	4921		12.532	0.89125	1	537690			29979	8651	18896	18998	28864	28864					-0.08814085834751495
SERIFLHDA	9	Unmodified	_SERIFLHDA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	544.2803955078125	2	544.28018	1086.54581	0.46851	0.000255	0.19509	0.00010618	0.6636	0.00036118	544.2801454989457	32.538	0.31293	32.538	32.378	32.691	0					17	5	4	0	0	0	0.0039465	1	12006	12006		151.48	72.752	1	29606000			29980	5653	18897	18999	28865	28865					0.005996708121301708
SERIFLHDA	9	Unmodified	_SERIFLHDA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	363.1893005371094	3	363.189212	1086.54581	-0.14671	-5.3282E-05	-0.00082296	-2.9889E-07	-0.14753	-5.3581E-05	363.18919980537305	32.508	0.26103	32.508	32.378	32.639	0					6	4	2	0	0	0	0.11498	1	12024	12024		44.945	24.364	1	8084600			29981	5653	18897	18999	28866	28866					0.005996708121301708
SERIFLHDA	9	Unmodified	_SERIFLHDA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	544.2803344726562	2	544.28018	1086.54581	0.61092	0.00033251	0.21175	0.00011525	0.82266	0.00044776	544.2802166515779	32.824	0.30962	32.612	32.43	32.739	-0.21135					13	5	3	0	0	0	0.0064416	1	12160	12160		125.04	64.964	1	157850000			29982	5653	18897	18999	28867	28867					0.005996708121301708
SERIFLHDA	9	Unmodified	_SERIFLHDA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	363.18890380859375	3	363.189212	1086.54581	-0.081198	-2.949E-05	0.41151	0.00014946	0.33031	0.00011997	363.18922989906946	32.824	0.20676	32.612	32.482	32.688	-0.21135					9	3	3	0	0	0	0.022505	1	12164	12164		78.61	40.839	1	73424000			29983	5653	18897	18999	28868	28868					0.005996708121301708
SERIFLHDA	9	Unmodified	_SERIFLHDA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	544.2805786132812	2	544.28018	1086.54581	0.68554	0.00037313	-0.074109	-4.0336E-05	0.61144	0.00033279	544.2800596632725	32.906	0.26647	32.621	32.456	32.722	-0.2851					9	5	2	0	0	0	0.0064416	1	12076	12076		125.04	64.964	1	18786000			29984	5653	18897	18999	28869	28869					0.005996708121301708
SERIFLHDA	9	Unmodified	_SERIFLHDA_					0	0	0		TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	TNRC18|p.G2106Vfs*3|1|0.33|ENSG00000182095|chr7:5324339-5324339|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	363.1893310546875	3	363.189212	1086.54581	0.15045	5.4643E-05	0.43604	0.00015836	0.58649	0.00021301	363.18948179326713	32.948	0.24564	32.663	32.456	32.702	-0.28511					9	4	3	0	0	0	0.094138	1	12090	12090		55.249	21.027	1	10661000			29985	5653	18897	18999	28870	28870					0.005996708121301708
SERKDVLTA	9	Unmodified	_SERKDVLTA_					0	0	0		nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1;nc|ENSG00000164828|O94901-3|SUN1;ENST00000340926.7_1_7:872152-889323:+|nuORF;ENST00000413171.6_1_7:872152-892516:+|nuORF	nc|ENSG00000164828|O94901-5|SUN1	nc|ENSG00000164828|O94901-5|SUN1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.7804870605469	2	509.780013	1017.54547	0.27066	0.00013798	-0.14052	-7.1636E-05	0.13013	6.634E-05	509.7799719237477	23.566	0.31112	23.183	22.936	23.247	-0.38324					6	4	2	0	0	0	0.17622	1	8393	8393		43.772	16.144	1	11211000			29986	4723	18898	19000	28871	28871					0.03740251092267499
SERKDVLTA	9	Unmodified	_SERKDVLTA_					0	0	0		nc|ENSG00000164828|O94901-5|SUN1;SUN1|p.E739Gfs*27|1|0.41|ENSG00000164828|chr7:872532-872533|-/G|frameshift_variant;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1;nc|ENSG00000164828|O94901-3|SUN1;ENST00000340926.7_1_7:872152-889323:+|nuORF;ENST00000413171.6_1_7:872152-892516:+|nuORF	nc|ENSG00000164828|O94901-5|SUN1	nc|ENSG00000164828|O94901-5|SUN1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	509.780013	1017.54547	0.35445	0.00018069	-0.34062	-0.00017364	0.013837	7.0538E-06	509.7799020144579	22.905	0.26025	22.905	22.741	23.001	0	-0.13878	-0.00013673	NaN	43.772	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4325800			29987	4723	18898	19000							0.03740251092267499
SERKIEFDSA	10	Unmodified	_SERKIEFDSA_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S2	2	591.293701171875	2	591.293485	1180.57242	0.61662	0.0003646	-0.054988	-3.2514E-05	0.56163	0.00033209	591.293419700636	28.281	0.2594	27.952	27.822	28.081	-0.32987					9	4	3	0	0	0	0.53295	1	10331	10331		32.898	11.308	1	26658000			29988	2613	18899	19001	28872	28872					-0.010646850871808056
SERKYYYYERH	11	Unmodified	_SERKYYYYERH_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MSMS	HCT116MG_D190212_S4	4	797.3790283203125	2	797.375872	1592.73719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.319	1	28.969	28.469	29.469	-0.34921								0	0	0	0.95581	1	10582	10582		3.2813	1.9518	1				29989	6157	18900	19002	28873	28873					-0.035468729473905114
SERLLRELY	9	Unmodified	_SERLLRELY_					0	0	0		TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	TRRAP-ASNS|1|fusion	TRRAP-ASNS|1|fusion	MULTI-MSMS	HCT116MG_D190212_S2	2	589.8299560546875	2	589.830037	1177.64552	0.71587	0.00042224	-0.19221	-0.00011337	0.52366	0.00030887	589.8296738583083	40.311	0.25987	40.238	40.102	40.361	-0.072838					9	4	3	0	0	0	0.0158	1	15219	15219		100.71	62.533	1	41131000			29990	18668	18901	19003	28874	28874					0.06380488426111697
SERLQAKLP	9	Unmodified	_SERLQAKLP_					0	0	0			REV__ENST00000469532.1_1_22:37628528-37640188:-|nuORF	REV__ENST00000469532.1_1_22:37628528-37640188:-|nuORF	MSMS	HCT116MG_D190212_S2	2	521.3056030273438	2	521.306198	1040.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.638	1	28.308	27.808	28.808	-0.32987								0	0	0	0.7689	1	10455	10455		4.756	0	1		+		29991	15855	18902	19004	28875	28875					0.07916834225898128
SERLQFETA	9	Unmodified	_SERLQFETA_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000487258.5_1_7:91722364-91739470:+|nuORF;ENST00000487692.1_1_7:91726485-91729288:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MSMS	HCT116MG_D190212_S3	3	540.7701416015625	2	540.769645	1079.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.33	1	35.031	34.531	35.531	-0.29922								0	0	0	0.55145	1	13037	13037		26.268	2.2476	1				29992	2979	18903	19005	28876	28876					-0.011843392873743142
SERLRAKETFF	11	Unmodified	_SERLRAKETFF_					0	0	0		ENST00000591922.1_1_18:13762358-13764329:+|nuORF	ENST00000591922.1_1_18:13762358-13764329:+|nuORF	ENST00000591922.1_1_18:13762358-13764329:+|nuORF	MSMS	HCT116MG_D190212_S2	2	692.3711547851562	2	692.372601	1382.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.194	1	25.832	25.332	26.332	-0.36164								0	0	0	0.94538	1	9466	9466		8.7454	1.6437	1				29993	9037	18904	19006	28877	28877					0.05459233891861004
SERPGLRGA	9	Unmodified	_SERPGLRGA_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	471.75921630859375	2	471.759415	941.504277	0.23329	0.00011006	-0.14552	-6.8649E-05	0.087773	4.1408E-05	471.7592963500605	19.697	0.36357	19.322	19.091	19.455	-0.37503					12	6	3	0	0	0	0.0068427	1	6837	6837		121.53	32.58	1	30092000			29994	6354	18905	19007	28878	28878					0.031185348434860316
SERRKDRRT	9	Unmodified	_SERRKDRRT_					0	0	0		ENST00000373313.2_1_20:39315851-39316046:-|nuORF	ENST00000373313.2_1_20:39315851-39316046:-|nuORF	ENST00000373313.2_1_20:39315851-39316046:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	401.5593566894531	3	401.893681	1202.65921	-0.10009	-4.0227E-05	0.28504	0.00011456	0.18495	7.4331E-05	401.8938020055011	28.62	0.25679	28.29	28.081	28.338	-0.32987					9	4	3	0	0	0	0.26488	1	10439	10439		2.2828	2.2828	1	61329000			29995	7476	18906	19008	28879	28879					0.06599158977883235
SERTSFNY	8	Unmodified	_SERTSFNY_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	nc|ENSG00000181019|P15559-3|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF	ENST00000569118.1_1_16:69751908-69760342:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	502.2279357910156	2	502.227613	1002.44067	0.36545	0.00018354	-0.26248	-0.00013183	0.10297	5.1715E-05	502.22730794286497	30.956	0.2594	30.689	30.456	30.716	-0.26704					6	4	2	0	0	0	0.38307	1	11411	11411		51.63	22.548	1	16067000			29996	5617;8878	18907	19009	28880	28880					-0.06044870384289425
SERVHEPEP	9	Unmodified	_SERVHEPEP_					0	0	0		ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	MULTI-SECPEP	HCT116MG_D190212_S3	3	540.26708984375	2	540.259445	1078.50434	0.36253	0.00019586	-0.27973	-0.00015113	0.082805	4.4736E-05	540.2589017551428	20.306	0.72884	20.354	20.051	20.78	0.048107					16	13	2	0	0	0	0.25004	1	7141	7141		6.7232	0	1	2491900			29997	3970	18908	19010	28881	28881					-0.03177509947181534
SERWKTMSA	9	Oxidation (M)	_SERWKTM(Oxidation (M))SA_		SERWKTM(1)SA		SERWKTM(40)SA	0	0	1		ENSG00000164104|ENST00000296503|HMGB2;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S2	2	556.263916015625	2	556.263673	1110.51279	0.28533	0.00015872	-0.72769	-0.00040479	-0.44237	-0.00024607	556.7647510313224	19.968	0.36263	19.593	19.455	19.817	-0.37503					15	6	3	0	0	0	0.20983	1	6961	6961		40.239	17.581	1	7624700			29998	4668;6037	18909	19011	28882	28882		101			-0.03804279302221403
SERWKTMSA	9	Unmodified	_SERWKTMSA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S2	2	548.2666625976562	2	548.266216	1094.51788	0.44727	0.00024522	0.063404	3.4762E-05	0.51067	0.00027998	548.2662175688324	26.99	0.421	26.638	26.45	26.871	-0.35254					14	7	3	0	0	0	0.16285	2	9827	9756;9827		45.74	21.719	1	85300000			29999	4668;6037	18909	19012	28883;28884	28884					-0.025599754396125718
SERWKTMSA	9	Unmodified	_SERWKTMSA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S2	2	365.8464050292969	3	365.846569	1094.51788	-0.19802	-7.2446E-05	0.35245	0.00012894	0.15443	5.6498E-05	365.84654226049554	27.002	0.20972	26.649	26.503	26.713	-0.35254					8	3	3	0	0	0	0.27446	1	9812	9812		25.997	17.021	1	13232000			30000	4668;6037	18909	19012	28885	28885					-0.025599754396125718
SERWKTMSA	9	Unmodified	_SERWKTMSA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S3	3	548.2666625976562	2	548.266216	1094.51788	0.51248	0.00028097	0.030705	1.6834E-05	0.54318	0.00029781	548.2662647162944	26.742	0.41626	26.593	26.359	26.775	-0.14924					13	7	3	0	0	0	0.018739	1	9609	9609		97.741	59.565	1	11406000			30001	4668;6037	18909	19012	28886	28886					-0.025599754396125718
SERWKTMSA	9	Unmodified	_SERWKTMSA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	HCT116MG_D190212_S3	3	365.8466796875	3	365.846569	1094.51788	-0.002157	-7.8913E-07	0.091865	3.3609E-05	0.089708	3.2819E-05	365.8466446653208	26.711	0.2081	26.562	26.463	26.671	-0.14924					5	3	2	0	0	0	0.43843	1	9612	9612		24.882	14.808	1	3412800			30002	4668;6037	18909	19012	28887	28887					-0.025599754396125718
SERWKTMSA	9	Unmodified	_SERWKTMSA_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;HMGB1|p.K44T|1|0.44|ENSG00000189403|chr13:30463550-30463550|T/G|missense_variant;ENST00000511316.1_1_4:174254218-174255486:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	548.266216	1094.51788	0.54873	0.00030085	-0.63341	-0.00034728	-0.084674	-4.6424E-05	548.2659010691459	26.527	0.2601	26.527	26.345	26.605	0	-0.05886	-0.00070862	NaN	97.741	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11598000			30003	4668;6037	18909	19012							-0.025599754396125718
SERWRWRWRAW	11	Unmodified	_SERWRWRWRAW_					0	0	0		SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	558.9564208984375	3	558.955275	1673.844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.694	1	14.533	14.033	15.033	-0.16089								0	0	0	0.9619	1	4676	4676		0.094841	0	1				30004	18180	18910	19013	28888	28888					0.03402766848284955
SERYAELY	8	Unmodified	_SERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7457885742188	2	515.745639	1029.47673	0.63029	0.00032507	-0.39319	-0.00020278	0.2371	0.00012229	515.7454414167457	35.914	0.30933	35.786	35.606	35.916	-0.12799					9	5	2	0	0	0	0.1893	1	13417	13417		75.761	30.061	1	41982000			30005	5985	18911	19014	28889	28889					-0.03683413207409103
SERYAELY	8	Unmodified	_SERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7457885742188	2	515.745639	1029.47673	-0.13331	-6.8753E-05	0.40725	0.00021004	0.27394	0.00014128	515.7457949154116	36.138	0.31213	35.837	35.678	35.99	-0.30042					12	5	3	0	0	0	0.14122	1	13335	13335		85.642	27.92	1	17387000			30006	5985	18911	19014	28890	28890					-0.03683413207409103
SERYAELY	8	Unmodified	_SERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7456665039062	2	515.745639	1029.47673	0.42377	0.00021856	-0.20734	-0.00010693	0.21644	0.00011163	515.7455024264787	36.278	0.24511	35.892	35.725	35.97	-0.38558					8	4	2	0	0	0	0.26254	1	13265	13265		62.573	22.615	1	6140100			30007	5985	18911	19014	28891	28891					-0.03683413207409103
SERYAELY	8	Unmodified	_SERYAELY_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant;nc|ENSG00000188483|Q5T953-2|IER5L	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MATCH	HCT116MG_D190212_S1	1		2	515.745639	1029.47673	0.52238	0.00026942	-0.23844	-0.00012298	0.28394	0.00014644	515.7453647756486	35.863	0.20853	35.863	35.733	35.942	0	0.018566	-0.00011015	NaN	85.642	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7426300			30008	5985	18911	19014							-0.03683413207409103
SESASQLTA	9	Unmodified	_SESASQLTA_					0	0	0		ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant;ZMYM1|p.L587*|1|0.29|ENSG00000197056|chr1:35113585-35113585|T/-|frameshift_variant;ZMYM1|p.R756Sfs*8|1|0.05|ENSG00000197056|chr1:35114097-35114098|-/TGGTGCTATCATA|frameshift_variant;ENSG00000197056|ENST00000359858|ZMYM1;ENST00000475654.5_1_1:35561461-35575934:+|nuORF	ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant	ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	893.4213256835938	1	893.421067	892.413791	1.0766	0.00096184	-0.078715	-7.0325E-05	0.99787	0.00089151	893.42076925423	25.843	0.31286	25.715	25.546	25.859	-0.12795					8	5	2	0	0	0	0.027492	1	9273	9273		88.904	20.823	1	5813400			30009	6116	18912	19015	28892	28892					-0.03671978995475911
SESDKAITP	9	Unmodified	_SESDKAITP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	474.2377014160156	2	474.237647	946.460741	0.1783	8.4558E-05	0.093667	4.442E-05	0.27197	0.00012898	474.2375879997507	23.029	1.0423	23.029	22.428	23.471	0					55	19	4	0	0	0	0.01405	2	8287	8046;8287		103.35	25.204	1	99257000			30010	3119	18913	19016	28893;28894	28894					-0.014631194443268214
SESDKAITP	9	Unmodified	_SESDKAITP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	474.2378845214844	2	474.237647	946.460741	0.20916	9.9193E-05	-0.11054	-5.2423E-05	0.098622	4.677E-05	474.237523478728	23.555	1.3508	23.172	22.416	23.767	-0.38324					69	25	4	0	0	0	0.01386	2	8221	8221;8463		103.82	25.674	1	445610000			30011	3119	18913	19016	28895;28896	28895					-0.014631194443268214
SESDKAITP	9	Unmodified	_SESDKAITP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	947.4688110351562	1	947.468017	946.460741	0.62709	0.00059415	0.13716	0.00012995	0.76425	0.00072411	947.4680062588045	23.556	0.88383	23.173	22.624	23.508	-0.38324					42	16	3	0	0	0	0.034046	2	8263	8263;8507		82.529	11.396	1	105430000			30012	3119	18913	19016	28897;28898	28897					-0.014631194443268214
SESDKAITP	9	Unmodified	_SESDKAITP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	474.2376708984375	2	474.237647	946.460741	0.13506	6.4049E-05	0.081353	3.8581E-05	0.21641	0.00010263	474.23759859116205	23.015	1.3941	22.987	22.273	23.668	-0.028095					77	26	4	0	0	0	0.0094709	2	8138	7906;8138		114.65	25.745	1	138990000			30013	3119	18913	19016	28899;28900	28900					-0.014631194443268214
SESDKAITP	9	Unmodified	_SESDKAITP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	947.4678955078125	1	947.468017	946.460741	0.64544	0.00061153	-0.25725	-0.00024374	0.38818	0.00036779	947.4677676424388	22.941	0.66459	22.922	22.543	23.208	-0.018869					24	12	2	0	0	0	0.041798	1	8020	8020		78.728	10.647	1	12459000			30014	3119	18913	19016	28901	28901					-0.014631194443268214
SESDKAITP	9	Unmodified	_SESDKAITP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	474.2374572753906	2	474.237647	946.460741	0.22009	0.00010438	-0.053355	-2.5303E-05	0.16674	7.9074E-05	474.2375340238458	23.232	0.99266	22.985	22.383	23.376	-0.24775					44	18	3	0	0	0	0.023778	2	8008	8008;8229		92.653	14.504	1	27487000			30015	3119	18913	19016	28902;28903	28902					-0.014631194443268214
SESDKAITP	9	Unmodified	_SESDKAITP_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	947.4683837890625	1	947.468017	946.460741	0.38898	0.00036855	-0.016962	-1.6071E-05	0.37202	0.00035248	947.4677680015309	23.246	0.57448	22.998	22.645	23.22	-0.24775					14	10	2	0	0	0	0.023778	1	8143	8143		92.653	7.3813	1	2376700			30016	3119	18913	19016	28904	28904					-0.014631194443268214
SESEAHLL	8	Unmodified	_SESEAHLL_					0	0	0		ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	443.2192687988281	2	443.219257	884.423961	0.15494	6.8673E-05	0.18823	8.3427E-05	0.34317	0.0001521	443.21925231317454	34.921	0.26015	34.921	34.753	35.013	0					7	4	2	0	0	0	0.083541	1	12985	12985		98.807	35.244	1	6854900			30017	3186	18914	19017	28905	28905					-0.022873712702221383
SESEAHLL	8	Unmodified	_SESEAHLL_					0	0	0		ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	443.2194519042969	2	443.219257	884.423961	0.19177	8.4995E-05	0.041893	1.8568E-05	0.23366	0.00010356	443.2191862798742	35.118	0.36206	34.96	34.761	35.123	-0.15834					13	6	3	0	0	0	0.020569	1	13086	13086		152.78	74.34	1	29190000			30018	3186	18914	19017	28906	28906					-0.022873712702221383
SESEAHLL	8	Unmodified	_SESEAHLL_					0	0	0		ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	443.2192687988281	2	443.219257	884.423961	0.33284	0.00014752	-0.075919	-3.3649E-05	0.25692	0.00011387	443.21911590916517	35.235	0.25962	34.935	34.801	35.061	-0.29922					10	4	3	0	0	0	0.065436	1	13000	13000		106.85	47.05	1	13280000			30019	3186	18914	19017	28907	28907					-0.022873712702221383
SESEKQWKA	9	Unmodified	_SESEKQWKA_					0	0	0		nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-MSMS	HCT116MG_D190212_S1	1	546.7698974609375	2	546.769645	1091.52474	0.65852	0.00036006	1.9825	0.001084	2.6411	0.0014441	546.7709308604034	20.612	0.93849	20.612	20.018	20.956	0					32	17	3	0	0	0	0.0034865	2	7196	7196;7218		165.72	80.079	1	51199000			30020	6528	18915	19018	28908;28909	28908					-0.017363392873676275
SESEKQWKA	9	Unmodified	_SESEKQWKA_					0	0	0		nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-MSMS	HCT116MG_D190212_S1	1	364.8483581542969	3	364.848856	1091.52474	0.052324	1.909E-05	0.93253	0.00034023	0.98485	0.00035932	364.84925633808706	20.61	0.62534	20.61	20.227	20.852	0					22	9	4	0	0	0	0.047849	1	7197	7197		69.338	21.59	1	25295000			30021	6528	18915	19018	28910	28910					-0.017363392873676275
SESEKQWKA	9	Unmodified	_SESEKQWKA_					0	0	0		nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-MSMS	HCT116MG_D190212_S2	2	1092.5335693359375	1	1092.53201	1091.52474	0.55965	0.00061143	1.8256	0.0019946	2.3853	0.002606	1092.5346277596855	21.284	0.46683	20.901	20.546	21.013	-0.38288					11	6	3	0	0	0	0.0046822	2	7492	7492;7521		140.63	92.884	1	21508000			30022	6528	18915	19018	28911;28912	28911					-0.017363392873676275
SESEPYRNA	9	Unmodified	_SESEPYRNA_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S1	1	526.7360229492188	2	526.735803	1051.45705	0.21482	0.00011315	0.080408	4.2354E-05	0.29522	0.0001555	526.7359519053415	19.506	0.20834	19.506	19.391	19.6	0					5	3	2	0	0	0	0.19461	1	6791	6791		41.84	9.5341	1	1895200			30023	1937	18916	19019	28913	28913					-0.06661789218173908
SESEPYRNA	9	Unmodified	_SESEPYRNA_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7361450195312	2	526.735803	1051.45705	0.35502	0.000187	0.56886	0.00029964	0.92387	0.00048664	526.7360392616565	20.011	0.41461	19.636	19.298	19.713	-0.37503					9	7	2	0	0	0	0.014023	1	6976	6976		103.42	51.151	1	16827000			30024	1937	18916	19019	28914	28914					-0.06661789218173908
SESEPYRNA	9	Unmodified	_SESEPYRNA_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7360229492188	2	526.735803	1051.45705	0.36777	0.00019372	0.26912	0.00014176	0.6369	0.00033548	526.7355512590728	19.289	0.3122	19.349	19.178	19.49	0.059828					9	5	3	0	0	0	0.090581	1	6620	6620		60.074	16.216	1	3556300			30025	1937	18916	19019	28915	28915					-0.06661789218173908
SESETSTMAA	10	Unmodified	_SESETSTMAA_					0	0	0		nc|ENSG00000152242|Q96B23-2|ARK2N;ENSG00000152242|ENST00000615052|C18orf25	nc|ENSG00000152242|Q96B23-2|ARK2N	nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-MSMS	HCT116MG_D190212_S3	3	1013.8981323242188	1	1013.40918	1012.40191	0.57584	0.00058356	-0.47441	-0.00048077	0.10143	0.00010279	1013.4085045141951	22.394	0.26078	22.389	22.245	22.506	-0.0045357					6	4	2	0	0	0	0.019944	2	7868	7868;7884		120.45	60.061	1	2262400			30026	4143	18917	19020	28916;28917	28916					-0.10379963800960468
SESEVQLRP	9	Unmodified	_SESEVQLRP_					0	0	0			REV__ENST00000372956.2_1_X:100183406-100183580:-|nuORF	REV__ENST00000372956.2_1_X:100183406-100183580:-|nuORF	MSMS	HCT116MG_D190212_S4	4	522.7691040039062	2	522.769645	1043.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.953	1	14.792	14.292	15.292	-0.16089								0	0	0	0.7696	1	4781	4781		2.3027	0	1		+		30027	15182	18918	19021	28918	28918					0.004716607126283634
SESFARSRLP	10	Unmodified	_SESFARSRLP_					0	0	0			REV__SHROOM4|p.G1268Rfs*28|1|0.77|ENSG00000158352|chrX:50602774-50602775|-/G|frameshift_variant	REV__SHROOM4|p.G1268Rfs*28|1|0.77|ENSG00000158352|chrX:50602774-50602775|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	575.2841796875	2	575.304187	1148.59382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.717	1	33.427	32.927	33.927	-0.29013								0	0	0	0.92272	1	12385	12385		10.824	1.4408	1		+		30028	12781	18919	19022	28919	28919					0.025467447321943837
SESFIQHIV	9	Unmodified	_SESFIQHIV_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2769775390625	2	530.277106	1058.53966	0.19604	0.00010395	-0.17108	-9.0722E-05	0.024953	1.3232E-05	530.2770411591529	49.828	0.30879	49.828	49.75	50.059	0					6	5	2	0	0	0	0.055677	1	19021	19021		71.922	13.243	1	20222000			30029	962	18920	19023	28920	28920					0.012731525806202626
SESFIQHIV	9	Unmodified	_SESFIQHIV_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2774047851562	2	530.277106	1058.53966	0.16574	8.789E-05	1.438	0.00076256	1.6038	0.00085045	530.2777805808324	50.024	0.46035	49.861	49.686	50.147	-0.16369					14	8	3	0	0	0	0.0044301	1	19165	19165		144.35	69.927	1	92377000			30030	962	18920	19023	28921	28921					0.012731525806202626
SESFIQHIV	9	Unmodified	_SESFIQHIV_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2772216796875	2	530.277106	1058.53966	0.37846	0.00020069	-0.22342	-0.00011848	0.15503	8.2211E-05	530.2770699085123	50.204	0.31218	49.888	49.707	50.019	-0.31525					13	5	4	0	0	0	0.016701	2	18948	18948;18972		99.799	51.453	1	26331000			30031	962	18920	19023	28922;28923	28922					0.012731525806202626
SESFIQHIV	9	Unmodified	_SESFIQHIV_					0	0	0		nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2766723632812	2	530.277106	1058.53966	0.35161	0.00018645	0.20965	0.00011117	0.56126	0.00029763	530.2770528402217	50.23	0.20814	49.871	49.741	49.949	-0.35878					8	3	3	0	0	0	0.042978	1	18683	18683		78.149	36.055	1	7161100			30032	962	18920	19023	28924	28924					0.012731525806202626
SESFRFSGL	9	Unmodified	_SESFRFSGL_					0	0	0		ENST00000409936.5_2_2:44587175-44588600:-|nuORF;ENST00000410081.5_2_2:44586875-44588600:-|nuORF;ENST00000409411.5_3_2:44573515-44588600:-|nuORF;ENST00000438314.1_3_2:44587786-44588600:-|nuORF	ENST00000409936.5_2_2:44587175-44588600:-|nuORF	ENST00000409936.5_2_2:44587175-44588600:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2535400390625	2	515.253631	1028.49271	0.27019	0.00013922	0.39954	0.00020587	0.66973	0.00034508	515.253770353279	40.924	0.4141	40.855	40.673	41.088	-0.069626					18	7	4	0	0	0	0.077982	1	15450	15450		62.573	10.943	1	157180000			30033	7727	18921	19024	28925	28925					-0.02039706970504085
SESFRFSGL	9	Unmodified	_SESFRFSGL_					0	0	0		ENST00000409936.5_2_2:44587175-44588600:-|nuORF;ENST00000410081.5_2_2:44586875-44588600:-|nuORF;ENST00000409411.5_3_2:44573515-44588600:-|nuORF;ENST00000438314.1_3_2:44587786-44588600:-|nuORF	ENST00000409936.5_2_2:44587175-44588600:-|nuORF	ENST00000409936.5_2_2:44587175-44588600:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2537841796875	2	515.253631	1028.49271	0.27502	0.00014171	0.21121	0.00010883	0.48623	0.00025053	515.2536152234399	41.167	0.31343	40.865	40.684	40.997	-0.30185					16	5	4	0	0	0	0.077982	1	15286	15286		62.573	12.64	1	45824000			30034	7727	18921	19024	28926	28926					-0.02039706970504085
SESFRFSGL	9	Unmodified	_SESFRFSGL_					0	0	0		ENST00000409936.5_2_2:44587175-44588600:-|nuORF;ENST00000410081.5_2_2:44586875-44588600:-|nuORF;ENST00000409411.5_3_2:44573515-44588600:-|nuORF;ENST00000438314.1_3_2:44587786-44588600:-|nuORF	ENST00000409936.5_2_2:44587175-44588600:-|nuORF	ENST00000409936.5_2_2:44587175-44588600:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	515.253631	1028.49271	0.27124	0.00013976	0.40953	0.00021101	0.68078	0.00035077	515.2536196033483	41.251	0.21715	40.873	40.756	40.973	-0.37732	0.0090157	0.0001037	NaN	62.573	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15048000			30035	7727	18921	19024							-0.02039706970504085
SESGIQMVP	9	Unmodified	_SESGIQMVP_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MSMS	HCT116MG_D190212_S2	2	947.4508056640625	1	947.450259	946.442982	0.98602	0.0009342	-0.49399	-0.00046803	0.49202	0.00046617	947.4496120810596	42.728	0.208	42.658	42.533	42.741	-0.069984					8	3	3	0	0	0	0.012168	1	16193	16193		108	53.223	1	20841000			30036	5189	18922	19025	28927	28927					-0.0323815797082716
SESGIQMVP	9	Unmodified	_SESGIQMVP_					0	0	0		ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	ENSG00000171311|ENST00000370902|EXOSC1	MULTI-MSMS	HCT116MG_D190212_S3	3	947.4513549804688	1	947.450259	946.442982	0.7981	0.00075616	0.10368	9.8236E-05	0.90179	0.0008544	947.4503980311829	42.942	0.30591	42.638	42.456	42.762	-0.30472					10	6	2	0	0	0	0.012168	1	16017	16017		108	53.223	1	9754300			30037	5189	18922	19025	28928	28928					-0.0323815797082716
SESGLITIA	9	Unmodified	_SESGLITIA_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	HCT116MG_D190212_S2	2	890.4856567382812	1	890.482939	889.475663	1.2534	0.0011162	-0.23096	-0.00020567	1.0225	0.00091051	890.4829543441249	47.691	0.31029	47.558	47.428	47.738	-0.13281					7	5	2	0	0	0	0.042978	1	18255	18255		78.149	13.913	1	15763000			30038	2447	18923	19026	28929	28929					0.02650372423670433
SESGLITIA	9	Unmodified	_SESGLITIA_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	HCT116MG_D190212_S3	3	890.4844360351562	1	890.482939	889.475663	0.72398	0.00064469	-0.057775	-5.1447E-05	0.6662	0.00059324	890.4828504970984	47.96	0.31261	47.645	47.462	47.775	-0.31596					11	5	3	0	0	0	0.019399	1	18032	18032		97.075	11.718	1	10214000			30039	2447	18923	19026	28930	28930					0.02650372423670433
SESGLITIA	9	Unmodified	_SESGLITIA_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	HCT116MG_D190212_S4	4	890.4843139648438	1	890.482939	889.475663	0.76079	0.00067747	0.05904	5.2574E-05	0.81983	0.00073005	890.48303412493	47.966	0.2578	47.597	47.468	47.726	-0.36907					6	4	2	0	0	0	0.043314	1	17779	17779		77.984	16.627	1	3268800			30040	2447	18923	19026	28931	28931					0.02650372423670433
SESGQLVGV	9	Unmodified	_SESGQLVGV_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S2	2	875.4478759765625	1	875.446888	874.439611	0.68899	0.00060318	0.26191	0.00022929	0.9509	0.00083247	875.4471303884394	37.361	0.25674	37.258	37.129	37.385	-0.10318					6	4	2	0	0	0	0.0060607	1	14008	14008		128.37	64.129	1	30497000			30041	3958	18924	19027	28932	28932					-0.0026308475318046476
SESGQLVGV	9	Unmodified	_SESGQLVGV_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	HCT116MG_D190212_S3	3	875.4462280273438	1	875.446888	874.439611	0.89115	0.00078016	0.40015	0.00035031	1.2913	0.0011305	875.4471899901858	37.549	0.2342	37.248	37.081	37.315	-0.30137					6	5	2	0	0	0	0.0060607	1	13905	13905		128.37	64.129	1	8673100			30042	3958	18924	19027	28933	28933					-0.0026308475318046476
SESGSNLHA	9	Unmodified	_SESGSNLHA_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	451.20404052734375	2	451.204138	900.393724	0.13087	5.9048E-05	0.045574	2.0563E-05	0.17644	7.9611E-05	451.20403146359337	19.44	0.31173	19.07	18.94	19.252	-0.3695					7	5	2	0	0	0	0.24895	1	6768	6768		36.127	9.2434	1	8472600			30043	171	18925	19028	28934	28934					-0.060457299354311544
SESKDMKAP	9	Unmodified	_SESKDMKAP_					0	0	0		TTC39C|p.A287Cfs*6|1|0.43|ENSG00000168234|chr18:24082949-24082950|-/T|frameshift_variant;TTC39C|p.E308Kfs*20|2|0.29|ENSG00000168234|chr18:24083013-24083013|A/-|frameshift_variant;nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	TTC39C|p.A287Cfs*6|1|0.43|ENSG00000168234|chr18:24082949-24082950|-/T|frameshift_variant	TTC39C|p.A287Cfs*6|1|0.43|ENSG00000168234|chr18:24082949-24082950|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	496.73968505859375	2	496.739499	991.464446	0.59748	0.00029679	-0.57006	-0.00028317	0.027417	1.3619E-05	496.7393120929174	17.489	0.26082	17.489	17.359	17.62	0					8	4	3	0	0	0	0.048237	1	5979	5979		75.571	21.738	1	6804700			30044	4992	18926	19029	28935	28935					-0.03162772942118863
SESKDMKAP	9	Unmodified	_SESKDMKAP_					0	0	0		TTC39C|p.A287Cfs*6|1|0.43|ENSG00000168234|chr18:24082949-24082950|-/T|frameshift_variant;TTC39C|p.E308Kfs*20|2|0.29|ENSG00000168234|chr18:24083013-24083013|A/-|frameshift_variant;nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	TTC39C|p.A287Cfs*6|1|0.43|ENSG00000168234|chr18:24082949-24082950|-/T|frameshift_variant	TTC39C|p.A287Cfs*6|1|0.43|ENSG00000168234|chr18:24082949-24082950|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	496.7396545410156	2	496.739499	991.464446	0.26279	0.00013054	-0.15467	-7.6832E-05	0.10812	5.3708E-05	496.7395224217776	18.086	0.36538	17.729	17.545	17.91	-0.35647					18	6	4	0	0	0	0.0081783	1	6197	6197		117.84	66.208	1	98961000			30045	4992	18926	19029	28936	28936					-0.03162772942118863
SESKDMKAP	9	Unmodified	_SESKDMKAP_					0	0	0		TTC39C|p.A287Cfs*6|1|0.43|ENSG00000168234|chr18:24082949-24082950|-/T|frameshift_variant;TTC39C|p.E308Kfs*20|2|0.29|ENSG00000168234|chr18:24083013-24083013|A/-|frameshift_variant;nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	TTC39C|p.A287Cfs*6|1|0.43|ENSG00000168234|chr18:24082949-24082950|-/T|frameshift_variant	TTC39C|p.A287Cfs*6|1|0.43|ENSG00000168234|chr18:24082949-24082950|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	496.73944091796875	2	496.739499	991.464446	0.18706	9.292E-05	0.15109	7.5052E-05	0.33815	0.00016797	496.73940571133437	16.906	0.67644	16.99	16.6	17.277	0.084467					22	12	3	0	0	0	0.0081783	2	5644	5640;5644		117.84	64.005	1	21284000			30046	4992	18926	19029	28937;28938	28938					-0.03162772942118863
SESKYTKVA	9	Unmodified	_SESKYTKVA_					0	0	0		TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	507.2665710449219	2	506.769114	1011.52368	-0.017905	-9.0737E-06	-4.2793	-0.0021686	-4.2972	-0.0021777	507.2671043602675	17.374	0.31215	17.456	17.325	17.638	0.081358					16	5	4	0	0	0	0.011034	2	5833	5833;5854		110.79	74.666	1	20173000			30047	1320	18927	19030	28939;28940	28939					0.018374463437112354
SESKYTKVA	9	Unmodified	_SESKYTKVA_					0	0	0		TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	507.2677917480469	2	506.769114	1011.52368	-0.05343	-2.7076E-05	-2.8109	-0.0014245	-2.8644	-0.0014516	506.7687963787408	17.763	0.20762	17.588	17.428	17.636	-0.17501					5	3	2	0	0	0	0.16285	1	5931	5931		45.74	27.594	1	2247300			30048	1320	18927	19030	28941	28941					0.018374463437112354
SESLDVWLWK	10	Unmodified	_SESLDVWLWK_					0	0	0		ENST00000356836.10_1_1:44445588-44445732:+|nuORF	ENST00000356836.10_1_1:44445588-44445732:+|nuORF	ENST00000356836.10_1_1:44445588-44445732:+|nuORF	MSMS	HCT116MG_D190212_S4	4	631.8264770507812	2	631.824421	1261.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.263	1	55.956	55.456	56.456	-0.30626								0	0	0	0.92607	1	21087	21087		10.074	3.3508	1				30049	7303	18928	19031	28942	28942					0.013936663319327636
SESLKDSAT	9	Unmodified	_SESLKDSAT_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	HCT116MG_D190212_S2	2	469.2273864746094	2	469.227279	936.440005	0.21918	0.00010285	-0.065359	-3.0668E-05	0.15382	7.2179E-05	469.2271943084358	19.335	0.26056	18.966	18.888	19.148	-0.3695					6	4	2	0	0	0	0.055677	1	6725	6725		71.922	1.5903	1	7034600			30050	2519	18929	19032	28943	28943					-0.030757098239973857
SESLKDSAT	9	Unmodified	_SESLKDSAT_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant;ASH1L|p.K1533Sfs*17|1|0.25|ENSG00000116539|chr1:155478272-155478272|T/-|frameshift_variant;ASH1L|p.H1793Ifs*7|1|0.13|ENSG00000116539|chr1:155438778-155438778|G/-|frameshift_variant;ASH1L|p.N1822Tfs*2|1|0.33|ENSG00000116539|chr1:155438690-155438690|T/-|frameshift_variant;ASH1L|p.R712Efs*23|3|0.35|ENSG00000116539|chr1:155480736-155480736|T/-|frameshift_variant;ASH1L|p.I970Lfs*9|1|0.2|ENSG00000116539|chr1:155479962-155479962|T/-|frameshift_variant;ASH1L|p.K1222Rfs*11|4|0.27|ENSG00000116539|chr1:155479205-155479205|T/-|frameshift_variant	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MATCH	HCT116MG_D190212_S1	1		2	469.227279	936.440005	0.1478	6.9352E-05	-0.40544	-0.00019024	-0.25764	-0.00012089	469.22698426304675	18.897	0.26068	18.897	18.766	19.027	0	-0.034645	-9.9673E-05	NaN	71.922	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1489300			30051	2519	18929	19032							-0.030757098239973857
SESLVNGNHTP	11	Unmodified	_SESLVNGNHTP_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1;PHLDB1|p.N577Ifs*42|1|0.64|ENSG00000019144|chr11:118628549-118628549|A/-|frameshift_variant	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MSMS	HCT116MG_D190212_S2	2	577.7908935546875	2	577.775459	1153.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.763	1	26.411	25.911	26.911	-0.35254								0	0	0	0.0010432	1	9697	9697		100.71	31.604	1				30052	936	18930	19033	28944	28944					-0.0342614226403839
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		SEC11C|p.G56D|1|0.31|ENSG00000166562|chr18:59149592-59149592|G/A|missense_variant;ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-3|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	SEC11C|p.G56D|1|0.31|ENSG00000166562|chr18:59149592-59149592|G/A|missense_variant	SEC11C|p.G56D|1|0.31|ENSG00000166562|chr18:59149592-59149592|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	942.5513305664062	1	942.550625	941.543348	0.75751	0.00071399	-0.040985	-3.863E-05	0.71652	0.00067536	942.5504584029898	56.313	0.30999	56.13	55.949	56.259	-0.18261					16	5	4	0	0	0	0.011506	1	21718	21718		109.63	24.273	1	178410000			30053	3679	18931	19034	28945	28945					0.070238223544834
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		SEC11C|p.G56D|1|0.31|ENSG00000166562|chr18:59149592-59149592|G/A|missense_variant;ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-3|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	SEC11C|p.G56D|1|0.31|ENSG00000166562|chr18:59149592-59149592|G/A|missense_variant	SEC11C|p.G56D|1|0.31|ENSG00000166562|chr18:59149592-59149592|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	942.5515747070312	1	942.550625	941.543348	0.72889	0.00068701	0.12152	0.00011454	0.85041	0.00080156	942.5506861121452	56.407	0.2622	56.124	55.993	56.255	-0.28367					11	4	3	0	0	0	0.011506	1	21425	21425		109.63	31.645	1	8881100			30054	3679	18931	19034	28946	28946					0.070238223544834
SESPIVVVL	9	Unmodified	_SESPIVVVL_					0	0	0		SEC11C|p.G56D|1|0.31|ENSG00000166562|chr18:59149592-59149592|G/A|missense_variant;ENST00000585864.1_1_18:56807180-56819918:+|nuORF;nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-3|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	SEC11C|p.G56D|1|0.31|ENSG00000166562|chr18:59149592-59149592|G/A|missense_variant	SEC11C|p.G56D|1|0.31|ENSG00000166562|chr18:59149592-59149592|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		1	942.550625	941.543348	0.7702	0.00072595	0.098008	9.2378E-05	0.86821	0.00081833	942.5508670372394	56.48	0.15778	56.174	56.042	56.2	-0.30626	0.03114	8.8331E-05	NaN	109.63	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2165100			30055	3679	18931	19034							0.070238223544834
SESPNGRIA	9	Unmodified	_SESPNGRIA_					0	0	0		nc|ENSG00000118961|Q9H6V9-4|LDAH;nc|ENSG00000118961|Q9H6V9-3|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH	nc|ENSG00000118961|Q9H6V9-4|LDAH	nc|ENSG00000118961|Q9H6V9-4|LDAH	MULTI-MSMS	HCT116MG_D190212_S2	2	465.7354736328125	2	465.735606	929.456658	0.11457	5.3359E-05	-0.034823	-1.6218E-05	0.079748	3.7141E-05	465.735458832525	20.271	0.36412	19.891	19.605	19.969	-0.37949					9	6	2	0	0	0	0.063511	1	7085	7085		68.081	0.73685	1	14416000			30056	2620	18932	19035	28947	28947					-0.010891641473790514
SESPNQLR	8	Unmodified	_SESPNQLR_					0	0	0			REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant	REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	465.73565673828125	2	465.735606	929.456658	0.28196	0.00013132	-0.22076	-0.00010282	0.061197	2.8502E-05	465.735404725324	19.404	0.26056	19.464	19.333	19.594	0.05983					7	4	2	0	0	0	0.14246	1	6662	6662		85.357	3.4665	1	4519900	+		30057	10299	18933	19036	28948	28948					-0.010891641473790514
SESPNQLR	8	Unmodified	_SESPNQLR_					0	0	0			REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant	REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	466.2146301269531	2	465.735606	929.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.744	1	19.55	19.05	20.05	-0.19367								0	0	0	0.8837	1	6716	6716		11.64	0.81637	1		+		30058	10299	18933	19036	28949	28949					-0.010891641473790514
SESPNQLR	8	Unmodified	_SESPNQLR_					0	0	0			REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant	REV__CSN1S1|p.Q102Lfs*9|1|0.04|ENSG00000126545|chr4:69941022-69941023|-/TATTACACCTG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	465.7350769042969	2	465.735606	929.456658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.774	1	19.581	19.081	20.081	-0.19367								0	0	0	0.8837	1	6728	6728		13.906	0.86358	1		+		30059	10299	18933	19036	28950	28950					-0.010891641473790514
SESPSRLGSP	10	Unmodified	_SESPSRLGSP_					0	0	0			REV__ZFYVE26|p.E706*|1|0.45|ENSG00000072121|chr14:67798147-67798148|-/G|frameshift_variant	REV__ZFYVE26|p.E706*|1|0.45|ENSG00000072121|chr14:67798147-67798148|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	508.30426025390625	2	508.753995	1015.49344	0.47401	0.00024115	-0.2855	-0.00014525	0.18851	9.5904E-05	508.7537953889608	22.507	0.3628	22.121	21.947	22.31	-0.3852					13	6	3	0	0	0	0.30239	1	7923	7923		4.897	0	1	22120000	+		30060	10771	18934	19037	28951	28951					-0.013689123214703613
SESPVILTP	9	Unmodified	_SESPVILTP_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	942.5293579101562	1	942.514239	941.506963	0.92033	0.00086743	-0.24403	-0.00023	0.67631	0.00063743	942.5134454523322	45.415	0.36371	45.415	45.244	45.607	0					11	6	3	0	0	0	0.016134	1	17176	17176		100.37	25.949	1	10001000			30061	171	18935	19038	28952	28952					0.033869454577597935
SESPVILTP	9	Unmodified	_SESPVILTP_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	942.5150146484375	1	942.514239	941.506963	0.62029	0.00058463	-0.023253	-2.1916E-05	0.59704	0.00056272	942.5140878622489	45.512	0.66998	45.42	45.049	45.719	-0.092472					25	12	3	0	0	0	0.0082751	1	17259	17259		117.6	20.524	1	67738000			30062	171	18935	19038	28953	28953					0.033869454577597935
SESPVILTP	9	Unmodified	_SESPVILTP_					0	0	0		ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant;ARHGAP11A|p.T646Lfs*6|1|0.08|ENSG00000198826|chr15:32636708-32636709|-/CTTTC|frameshift_variant;ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	ARHGAP11A|p.L629Ifs*3|1|0.21|ENSG00000198826|chr15:32636653-32636654|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	942.5151977539062	1	942.514239	941.506963	0.72826	0.0006864	0.0047818	4.5069E-06	0.73304	0.0006909	942.5139998268035	45.777	0.56776	45.466	45.148	45.716	-0.31094					21	10	3	0	0	0	0.0082751	1	17100	17100		117.6	20.524	1	11443000			30063	171	18935	19038	28954	28954					0.033869454577597935
SESPVITKA	9	Unmodified	_SESPVITKA_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	466.2584533691406	2	466.258382	930.502212	0.19806	9.2346E-05	-0.22224	-0.00010362	-0.024187	-1.1278E-05	466.25828382246664	24.909	0.31422	24.909	24.725	25.04	0					13	5	3	0	0	0	0.030039	1	8943	8943		86.332	19.875	1	11096000			30064	274	18936	19039	28955	28955					0.034180613149942474
SESPVITKA	9	Unmodified	_SESPVITKA_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	466.25848388671875	2	466.258382	930.502212	0.22529	0.00010505	-0.16575	-7.7281E-05	0.059548	2.7765E-05	466.25823345243987	25.373	0.46931	24.998	24.764	25.233	-0.37521					21	8	4	0	0	0	0.0045841	1	9109	9109		142.08	69.112	1	106410000			30065	274	18936	19039	28956	28956					0.034180613149942474
SESPVITKA	9	Unmodified	_SESPVITKA_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	931.5103759765625	1	931.509488	930.502212	0.88425	0.00082369	-0.063524	-5.9173E-05	0.82073	0.00076451	931.5095386932728	25.373	0.26036	24.998	24.816	25.076	-0.37521					8	4	2	0	0	0	0.0046822	1	9145	9145		140.63	72.552	1	13053000			30066	274	18936	19039	28957	28957					0.034180613149942474
SESPVITKA	9	Unmodified	_SESPVITKA_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	466.2584228515625	2	466.258382	930.502212	0.38501	0.00017951	-0.25631	-0.00011951	0.1287	6.0008E-05	466.25819009966784	24.973	0.52114	24.866	24.631	25.152	-0.10618					27	9	4	0	0	0	0.0063854	1	8878	8878		125.53	61.569	1	46920000			30067	274	18936	19039	28958	28958					0.034180613149942474
SESPVITKA	9	Unmodified	_SESPVITKA_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	931.5107421875	1	931.509488	930.502212	0.95995	0.00089421	-0.61881	-0.00057642	0.34115	0.00031778	931.5089267050948	24.971	0.26046	24.865	24.735	24.995	-0.10618					7	4	2	0	0	0	0.0059958	1	8906	8906		128.93	67.575	1	2543200			30068	274	18936	19039	28959	28959					0.034180613149942474
SESPVITKA	9	Unmodified	_SESPVITKA_					0	0	0		BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant;BPTF|p.D2844Afs*20|1|0.08|ENSG00000171634|chr17:67959766-67959767|-/C|frameshift_variant;nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	466.25830078125	2	466.258382	930.502212	0.10678	4.9789E-05	0.16663	7.7695E-05	0.27342	0.00012748	466.25836170134096	25.212	0.41609	24.933	24.694	25.11	-0.27958					18	7	3	0	0	0	0.034046	1	8906	8906		82.529	22.455	1	13273000			30069	274	18936	19039	28960	28960					0.034180613149942474
SESPYQRKA	9	Unmodified	_SESPYQRKA_					0	0	0		ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	532.7564086914062	2	533.269813	1064.52507	0.31532	0.00016815	-0.0034749	-1.853E-06	0.31185	0.0001663	533.2696383430579	16.252	0.26041	16.252	16.056	16.317	0					6	4	2	0	0	0	0.19273	1	5448	5448		36.127	12.106	1	2437400			30070	6076	18937	19040	28961	28961					-0.004609195675357114
SESPYQRKA	9	Unmodified	_SESPYQRKA_					0	0	0		ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	533.2700805664062	2	533.269813	1064.52507	0.44796	0.00023889	-0.093721	-4.9979E-05	0.35424	0.00018891	533.2697667529543	16.676	0.36443	16.334	16.152	16.516	-0.34183					13	6	3	0	0	0	0.0045841	1	5625	5625		142.08	73.999	1	18861000			30071	6076	18937	19040	28962	28962					-0.004609195675357114
SESPYQRKA	9	Unmodified	_SESPYQRKA_					0	0	0		ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	ENST00000559588.5_1_14:24652221-24657802:-|nuORF	MSMS	HCT116MG_D190212_S2	2	355.84857177734375	3	355.848967	1064.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.811	1	16.469	15.969	16.969	-0.34183								0	0	0	0.76834	1	5682	5682		7.1017	4.3665	1				30072	6076	18937	19040	28963	28963					-0.004609195675357114
SESQVHMM	8	Unmodified	_SESQVHMM_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S1	1	474.69921875	2	474.69932	947.384087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.799	1	28.799	28.299	29.299	0								0	0	0	0.70483	1	10502	10502		30.225	4.8255	1				30073	3119	18938	19041	28964	28964					-0.09170957536798596
SESQVHMM	8	Unmodified	_SESQVHMM_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MSMS	HCT116MG_D190212_S2	2	474.6993103027344	2	474.69932	947.384087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.332	1	29.023	28.523	29.523	-0.30843								0	0	0	0.00061092	1	10740	10740		125.62	61.388	1				30074	3119	18938	19041	28965	28965					-0.09170957536798596
SESQVHMM	8	Unmodified	_SESQVHMM_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	474.699462890625	2	474.69932	947.384087	0.32757	0.0001555	-0.019939	-9.4652E-06	0.30763	0.00014603	474.6993212700892	29.259	0.31227	29.038	28.89	29.202	-0.22196					8	5	2	0	0	0	0.076688	1	10642	10642		100.37	64.327	1	4853500			30075	3119	18938	19041	28966	28966					-0.09170957536798596
SESQVHMMA	9	Unmodified	_SESQVHMMA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	510.21820068359375	2	510.217877	1018.4212	0.65212	0.00033272	0.21799	0.00011122	0.87012	0.00044395	510.2179048819665	28.72	0.31598	28.72	28.535	28.851	0					7	5	2	0	0	0	0.32978	1	10476	10476		27.629	12.791	1	10405000			30076	3119	18939	19042	28967	28967					-0.08727285991039935
SESQVHMMA	9	Unmodified	_SESQVHMMA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	510.2177734375	2	510.217877	1018.4212	0.39231	0.00020016	-0.80624	-0.00041136	-0.41393	-0.00021119	510.21770742159435	29.255	0.40936	28.939	28.761	29.17	-0.31613					13	7	3	0	0	0	0.0058997	1	10696	10696		129.77	87.817	1	84656000			30077	3119	18939	19042	28968	28968					-0.08727285991039935
SESQVHMMA	9	Unmodified	_SESQVHMMA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	510.2178039550781	2	510.217877	1018.4212	0.28266	0.00014422	-0.46815	-0.00023886	-0.1855	-9.4644E-05	510.21783688495714	29.19	0.52067	28.968	28.786	29.306	-0.22195					22	9	4	0	0	0	0.012596	1	10596	10596		106.94	68.789	1	53227000			30078	3119	18939	19042	28969	28969					-0.08727285991039935
SESQVHMMA	9	Unmodified	_SESQVHMMA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	510.21783447265625	2	510.217877	1018.4212	0.17699	9.0301E-05	-0.58124	-0.00029656	-0.40425	-0.00020626	510.2178878710562	29.408	0.31174	29.059	28.877	29.189	-0.34921					11	5	3	0	0	0	0.049545	1	10608	10608		74.929	44.292	1	11686000			30079	3119	18939	19042	28970	28970					-0.08727285991039935
SESQVHMMA	9	Oxidation (M)	_SESQVHM(Oxidation (M))MA_		SESQVHM(0.996)M(0.004)A		SESQVHM(24)M(-24)A	0	0	1		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2156372070312	2	518.215334	1034.41612	0.23275	0.00012062	-0.29352	-0.00015211	-0.060766	-3.149E-05	518.2151811866406	20.412	0.37097	20.033	19.865	20.236	-0.37949					9	6	2	0	0	0	0.020353	1	7177	7177		96.111	52.129	2	7523600			30080	3119	18939	19043	28971	28971		71;72			-0.09971589853671503
SESQVHMMA	9	Oxidation (M)	_SESQVHMM(Oxidation (M))A_		SESQVHM(0.082)M(0.918)A		SESQVHM(-10)M(10)A	0	0	1		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2153930664062	2	518.215334	1034.41612	0.3531	0.00018298	-0.2903	-0.00015044	0.0628	3.2544E-05	518.215147902584	23.76	0.26031	23.377	23.247	23.508	-0.38324					7	4	2	0	0	0	0.020353	1	8509	8509		96.111	55.386	2	16351000			30081	3119	18939	19043	28972	28972		71;72			-0.09971589853671503
SESQVHMMA	9	Oxidation (M)	_SESQVHMM(Oxidation (M))A_		SESQVHM(0.103)M(0.897)A		SESQVHM(-9.4)M(9.4)A	0	0	1		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	518.2153930664062	2	518.215334	1034.41612	0.24063	0.0001247	-0.2049	-0.00010618	0.035729	1.8516E-05	518.2152012611837	23.287	0.36488	23.247	23.083	23.448	-0.03968					12	6	3	0	0	0	0.063511	1	8230	8230		68.081	28.131	2	7444800			30082	3119	18939	19043	28973	28973		71;72			-0.09971589853671503
SESQVHMMA	9	Oxidation (M)	_SESQVHMM(Oxidation (M))A_		SESQVHM(0.297)M(0.703)A		SESQVHM(-3.7)M(3.7)A	0	0	1		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	518.2161254882812	2	518.215334	1034.41612	0.20029	0.00010379	-0.20929	-0.00010846	-0.0090007	-4.6643E-06	518.2151694183754	23.56	0.2601	23.312	23.168	23.428	-0.24775					8	4	2	0	0	0	0.035349	1	8267	8267		81.89	36.191	2	3293600			30083	3119	18939	19043	28974	28974		71;72			-0.09971589853671503
SESQVHMMAA	10	Unmodified	_SESQVHMMAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	545.73681640625	2	545.736434	1089.45831	0.49876	0.00027219	-0.20122	-0.00010981	0.29754	0.00016238	545.7363577904422	29.697	0.25966	29.697	29.581	29.841	0					9	4	3	0	0	0	0.15757	1	10904	10904		63.227	43.971	1	5862500			30084	3119	18940	19044	28975	28975					-0.08283614445281273
SESQVHMMAA	10	Unmodified	_SESQVHMMAA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant;AKAP12|p.P1160Lfs*18|3|0.22|ENSG00000131016|chr6:151351865-151351865|C/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	545.737060546875	2	545.736434	1089.45831	0.12527	6.8366E-05	0.10839	5.9155E-05	0.23367	0.00012752	545.7367138377878	30.174	0.25796	29.89	29.718	29.976	-0.28453					11	4	4	0	0	0	0.015946	1	11074	11074		129.77	89.823	1	38877000			30085	3119	18940	19044	28976	28976					-0.08283614445281273
SESRFFVSS	9	Unmodified	_SESRFFVSS_					0	0	0		nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	nc|ENSG00000172270|P35613-3|BSG	nc|ENSG00000172270|P35613-3|BSG	MSMS	HCT116MG_D190212_S1	1	523.2516479492188	2	523.251089	1044.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.339	1	37.339	36.839	37.839	0								0	0	0	0.038892	1	13947	13947		74.2	24.645	1				30086	5245	18941	19045	28977	28977					-0.03284010833135653
SESRFFVSS	9	Unmodified	_SESRFFVSS_					0	0	0		nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	nc|ENSG00000172270|P35613-3|BSG	nc|ENSG00000172270|P35613-3|BSG	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2508544921875	2	523.251089	1044.48762	0.20941	0.00010957	-0.66726	-0.00034914	-0.45785	-0.00023957	523.250547999138	37.367	0.40879	37.264	37.078	37.486	-0.10318					18	7	4	0	0	0	0.011132	1	14000	14000		110.55	60.998	1	242810000			30087	5245	18941	19045	28978	28978					-0.03284010833135653
SESRFFVSS	9	Unmodified	_SESRFFVSS_					0	0	0		nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	nc|ENSG00000172270|P35613-3|BSG	nc|ENSG00000172270|P35613-3|BSG	MULTI-SECPEP	HCT116MG_D190212_S2	2	1045.4949951171875	1	1045.4949	1044.48762	0.56471	0.0005904	-0.21897	-0.00022893	0.34574	0.00036147	1045.4945324678024	37.361	0.20672	37.258	37.129	37.335	-0.10318					5	3	2	0	0	0	0.0014672	1	14029	14029		125.04	55.933	1	30195000			30088	5245	18941	19045	28979	28979					-0.03284010833135653
SESRFFVSS	9	Unmodified	_SESRFFVSS_					0	0	0		nc|ENSG00000172270|P35613-3|BSG;nc|ENSG00000172270|P35613-4|BSG;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	nc|ENSG00000172270|P35613-3|BSG	nc|ENSG00000172270|P35613-3|BSG	MULTI-MSMS	HCT116MG_D190212_S3	3	523.2510986328125	2	523.251089	1044.48762	0.42339	0.00022154	-0.23781	-0.00012443	0.18558	9.7107E-05	523.2508653592735	37.592	0.28931	37.291	37.081	37.37	-0.30137					24	12	2	0	0	0	0.019537	1	13901	13901		96.936	43.103	1	71707000			30089	5245	18941	19045	28980	28980					-0.03284010833135653
SESRMVVTF	9	Unmodified	_SESRMVVTF_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;GTF2I|p.L189*|1|0.21|ENSG00000263001|chr7:74700609-74700609|T/-|frameshift_variant	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MSMS	HCT116MG_D190212_S1	1	528.2631225585938	2	528.263142	1054.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.843	1	44.843	44.343	45.343	0								0	0	0	0.031974	1	16975	16975		80.676	32.33	1				30090	6638	18942	19046	28981	28981					-0.013344936711291666
SESRMVVTF	9	Unmodified	_SESRMVVTF_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;GTF2I|p.L189*|1|0.21|ENSG00000263001|chr7:74700609-74700609|T/-|frameshift_variant	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S2	2	528.263427734375	2	528.263142	1054.51173	0.65281	0.00034486	-0.4097	-0.00021643	0.24311	0.00012843	528.2630317880119	44.75	0.57467	44.665	44.482	45.056	-0.084797					15	10	2	0	0	0	0.0082095	1	17004	17004		117.76	60.039	1	109140000			30091	6638	18942	19046	28982	28982					-0.013344936711291666
SESRMVVTF	9	Unmodified	_SESRMVVTF_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;GTF2I|p.L189*|1|0.21|ENSG00000263001|chr7:74700609-74700609|T/-|frameshift_variant	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	HCT116MG_D190212_S4	4	528.2627563476562	2	528.263142	1054.51173	0.46564	0.00024598	-0.11917	-6.2951E-05	0.34648	0.00018303	528.2631414444659	45.127	0.27095	44.754	44.613	44.884	-0.37266					7	5	2	0	0	0	0.27446	1	16669	16669		33.445	11.698	1	2505900			30092	6638	18942	19046	28983	28983					-0.013344936711291666
SESSDVLPK	9	Unmodified	_SESSDVLPK_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	481.2453918457031	2	481.245472	960.476391	0.2813	0.00013537	-0.1414	-6.8049E-05	0.1399	6.7324E-05	481.2454109011272	26.175	0.41732	26.175	25.98	26.397	0					13	7	3	0	0	0	0.45867	1	9472	9472		19.257	6.7254	1	6323300		+	30093	558	18943	19047	28984	28984					-0.005428329272831434
SESSQSLAA	9	Unmodified	_SESSQSLAA_					0	0	0		SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1;ENST00000607742.5_1_6:158538757-158579378:-|nuORF	SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant	SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	879.4068603515625	1	879.405417	878.39814	0.70225	0.00061756	2.6272	0.0023104	3.3295	0.0029279	879.4058907710308	22.828	0.7167	22.809	22.283	22.999	-0.018869					19	13	3	0	0	0	0.035349	1	8042	8042		81.89	21.501	1	9972300			30094	2758	18944	19048	28985	28985					-0.0459226551250822
SESSQSLAA	9	Unmodified	_SESSQSLAA_					0	0	0		SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1;ENST00000607742.5_1_6:158538757-158579378:-|nuORF	SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant	SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	440.20648193359375	2	440.206347	878.39814	0.069166	3.0447E-05	0.20649	9.09E-05	0.27566	0.00012135	440.2063641930851	22.836	0.30001	22.817	22.699	22.999	-0.018869					9	5	3	0	0	0	0.1754	1	8059	8059		43.858	5.7071	1	5013200			30095	2758	18944	19048	28986	28986					-0.0459226551250822
SESSVTLSP	9	Unmodified	_SESSVTLSP_					0	0	0		NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2	NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant	NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	906.4424438476562	1	906.441468	905.434192	0.68768	0.00062334	-0.078285	-7.0961E-05	0.6094	0.00055238	906.4414978581093	33.948	0.67582	33.654	33.352	34.027	-0.29419					20	12	2	0	0	0	0.0082751	1	12461	12461		117.6	32.242	1	5764700			30096	3271	18945	19049	28987	28987					-0.02230808335639267
SESSVTLSP	9	Unmodified	_SESSVTLSP_					0	0	0		NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2	NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant	NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	906.4407958984375	1	906.441468	905.434192	0.77117	0.00069902	-0.3601	-0.00032641	0.41107	0.00037261	906.4407344100472	34.114	0.51957	33.729	33.413	33.932	-0.38504					12	9	2	0	0	0	0.019399	1	12446	12446		97.075	19.09	1	2177000			30097	3271	18945	19049	28988	28988					-0.02230808335639267
SESSVVLQPLI	11	Unmodified	_SESSVVLQPLI_					0	0	0		sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1;sp|P16848|UL31_HCMVAProteinUL31OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL31PE=1SV=2	sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	391.22503662109375	3	391.223811	1170.6496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.952	1	40.575	40.075	41.075	-0.37732								0	0	0	0.95581	1	15043	15043		2.8433	0.99905	1				30098	18218	18946	19050	28989	28989					0.07110533129161922
SESTAIISY	9	Unmodified	_SESTAIISY_					0	0	0		ENST00000585436.5_1_16:5139172-5145393:-|nuORF;ENST00000585975.5_1_16:5140431-5147740:-|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT	ENST00000585436.5_1_16:5139172-5145393:-|nuORF	ENST00000585436.5_1_16:5139172-5145393:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	970.4739379882812	1	970.472768	969.465492	0.78208	0.00075899	0.39045	0.00037892	1.1725	0.0011379	970.4729686878005	41.537	0.3072	41.469	41.293	41.601	-0.068199					12	5	3	0	0	0	0.1037	1	15704	15704		57.471	19.497	1	40819000			30099	2617	18947	19051	28990	28990					-0.020462353015545887
SESTWEPRQNL	11	Unmodified	_SESTWEPRQNL_					0	0	0		SUV39H1|p.A198Rfs*140|1|0.39|ENSG00000101945|chrX:48700513-48700513|G/-|frameshift_variant;ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1	SUV39H1|p.A198Rfs*140|1|0.39|ENSG00000101945|chrX:48700513-48700513|G/-|frameshift_variant	SUV39H1|p.A198Rfs*140|1|0.39|ENSG00000101945|chrX:48700513-48700513|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	449.224609375	3	449.549357	1345.62624	0.12405	5.5765E-05	0.08042	3.6153E-05	0.20447	9.1918E-05	449.54926055966655	18.167	0.20874	18.167	18.037	18.246	0					7	3	3	0	0	0	0.36618	1	6185	6185		0.45452	0	1	7986000			30100	1815	18948	19052	28991	28991					-0.03274512655457329
SESVPVIAA	9	Unmodified	_SESVPVIAA_					0	0	0		ENST00000513565.6_1_5:122694091-122724023:-|nuORF;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120;CEP120|p.K738Rfs*29|2|0.21|ENSG00000168944|chr5:123377519-123377519|T/-|frameshift_variant	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	872.4744873046875	1	872.472374	871.465098	0.65576	0.00057213	0.2988	0.00026069	0.95456	0.00083283	872.4729596464897	39.909	0.30949	39.837	39.636	39.945	-0.072842					8	5	2	0	0	0	0.058138	1	15060	15060		70.716	19.86	1	11285000			30101	5041	18949	19053	28992	28992					0.024223897692422725
SESVPVIAA	9	Unmodified	_SESVPVIAA_					0	0	0		ENST00000513565.6_1_5:122694091-122724023:-|nuORF;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120;CEP120|p.K738Rfs*29|2|0.21|ENSG00000168944|chr5:123377519-123377519|T/-|frameshift_variant	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENST00000513565.6_1_5:122694091-122724023:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	872.47265625	1	872.472374	871.465098	0.6533	0.00056998	-0.70603	-0.00061599	-0.052735	-4.601E-05	872.4720464138524	40.163	0.30849	39.862	39.699	40.007	-0.30137					11	5	3	0	0	0	0.014796	1	14918	14918		101.72	31.006	1	7034200			30102	5041	18949	19053	28993	28993					0.024223897692422725
SESWPTVL	8	Unmodified	_SESWPTVL_					0	0	0		ENST00000414207.5_1_3:197350234-197351372:-|nuORF	ENST00000414207.5_1_3:197350234-197351372:-|nuORF	ENST00000414207.5_1_3:197350234-197351372:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	918.4572143554688	1	918.456724	917.449448	0.803	0.00073752	0.19043	0.0001749	0.99343	0.00091242	918.4571748422403	55.506	0.26858	55.214	55.031	55.3	-0.2918					7	4	2	0	0	0	0.10511	1	21087	21087		93.883	4.4566	1	2458700			30103	7745	18950	19054	28994	28994					-0.012578967478134473
SESWPTVL	8	Unmodified	_SESWPTVL_					0	0	0		ENST00000414207.5_1_3:197350234-197351372:-|nuORF	ENST00000414207.5_1_3:197350234-197351372:-|nuORF	ENST00000414207.5_1_3:197350234-197351372:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	918.456724	917.449448	0.74717	0.00068625	-2.6361	-0.0024212	-1.889	-0.0017349	918.4538206002088	55.439	0.41029	55.253	55.021	55.431	-0.18565	0.019757	-0.0023228	NaN	93.883	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10516000			30104	7745	18950	19054							-0.012578967478134473
SESWTSHTV	9	Unmodified	_SESWTSHTV_					0	0	0		ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	MULTI-MSMS	HCT116MG_D190212_S2	2	517.233154296875	2	517.232896	1032.45124	0.31153	0.00016113	0.14964	7.7398E-05	0.46116	0.00023853	517.2329007397014	32.146	0.20804	31.916	31.787	31.995	-0.23009					6	3	2	0	0	0	0.016134	1	11900	11900		100.37	67.586	1	17026000			30105	2900	18951	19055	28995	28995					-0.06368887729877315
SETANYISA	9	Unmodified	_SETANYISA_					0	0	0		ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF;ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	955.4384765625	1	955.436717	954.429441	0.68456	0.00065406	0.50451	0.00048203	1.1891	0.0011361	955.4373994344002	31.987	0.26089	31.987	31.857	32.118	0					7	4	2	0	0	0	0.027442	1	11797	11797		88.954	20.873	1	4925300			30106	5459	18952	19056	28996	28996					-0.04959692478416855
SETANYISA	9	Unmodified	_SETANYISA_					0	0	0		ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF;ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	955.4378051757812	1	955.436717	954.429441	0.63961	0.00061111	-0.013555	-1.2951E-05	0.62606	0.00059816	955.4363404829891	32.199	0.4157	31.969	31.787	32.202	-0.23009					12	7	2	0	0	0	0.010834	1	11911	11911		111.29	15.002	1	48689000			30107	5459	18952	19056	28997	28997					-0.04959692478416855
SETANYISA	9	Unmodified	_SETANYISA_					0	0	0		ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF;ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	955.4374389648438	1	955.436717	954.429441	0.6683	0.00063851	0.037583	3.5909E-05	0.70588	0.00067442	955.4365563575934	32.303	0.52074	32.024	31.838	32.358	-0.27841					20	9	3	0	0	0	0.055677	1	11824	11824		71.922	0.78869	1	19286000			30108	5459	18952	19056	28998	28998					-0.04959692478416855
SETANYISA	9	Unmodified	_SETANYISA_					0	0	0		ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF;ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	478.2222595214844	2	478.221997	954.429441	0.12577	6.0146E-05	-0.01314	-6.2837E-06	0.11263	5.3862E-05	478.22197910682956	32.298	0.31273	32.02	31.89	32.202	-0.27841					11	5	3	0	0	0	0.16144	1	11856	11856		46.021	4.1813	1	7933000			30109	5459	18952	19056	28999	28999					-0.04959692478416855
SETANYISA	9	Unmodified	_SETANYISA_					0	0	0		ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF;ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	955.43603515625	1	955.436717	954.429441	0.47531	0.00045413	0.16419	0.00015687	0.6395	0.000611	955.436434583193	32.409	0.31128	32.029	31.845	32.157	-0.37924					10	5	3	0	0	0	0.010834	1	11807	11807		111.29	22.383	1	7569000			30110	5459	18952	19056	29000	29000					-0.04959692478416855
SETANYISA	9	Unmodified	_SETANYISA_					0	0	0		ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF;ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	MSMS	HCT116MG_D190212_S4	4	478.2222900390625	2	478.221997	954.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.482	1	32.103	31.603	32.603	-0.37924								0	0	0	0.49326	1	11832	11832		29.082	7.3349	1				30111	5459	18952	19056	29001	29001					-0.04959692478416855
SETANYISA	9	Unmodified	_SETANYISA_					0	0	0		ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF;ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	ENST00000469038.1_1_3:49011147-49012531:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	478.221997	954.429441	0.24018	0.00011486	-0.087823	-4.1999E-05	0.15236	7.286E-05	478.2219361050552	32.208	0.20797	31.978	31.838	32.046	-0.23009	-0.021046	-3.3687E-05	NaN	46.021	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11189000			30112	5459	18952	19056							-0.04959692478416855
SETDFKVM	8	Unmodified	_SETDFKVM_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S2	2	478.72344970703125	2	478.723318	955.432083	0.016833	8.0585E-06	0.32581	0.00015597	0.34264	0.00016403	478.7234206556935	38.082	0.25812	37.989	37.857	38.115	-0.09301					10	4	3	0	0	0	0.079196	1	14318	14318		99.799	47.531	1	36665000			30113	3950	18953	19057	29002	29002					-0.04741560345109974
SETDFKVM	8	Unmodified	_SETDFKVM_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S3	3	478.7231140136719	2	478.723318	955.432083	0.20746	9.9318E-05	-0.48455	-0.00023197	-0.27709	-0.00013265	478.7231656368198	38.279	0.4146	37.977	37.833	38.248	-0.30137					10	7	2	0	0	0	0.094591	1	14191	14191		96.285	34.927	1	9454700			30114	3950	18953	19057	29003	29003					-0.04741560345109974
SETDFKVM	8	Unmodified	_SETDFKVM_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MSMS	HCT116MG_D190212_S4	4	478.7232360839844	2	478.723318	955.432083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.473	1	38.091	37.591	38.591	-0.38163								0	0	0	0.8837	1	14101	14101		14.838	0.25658	1				30115	3950	18953	19057	29004	29004					-0.04741560345109974
SETDFKVM	8	Unmodified	_SETDFKVM_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MATCH	HCT116MG_D190212_S1	1		2	478.723318	955.432083	-0.40345	-0.00019314	-0.4775	-0.00022859	-0.88096	-0.00042173	478.7233347289618	38.045	0.15545	38.045	37.916	38.071	0	0.04099	-0.00041638	NaN	99.799	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3709300			30116	3950	18953	19057							-0.04741560345109974
SETDFKVMA	9	Oxidation (M)	_SETDFKVM(Oxidation (M))A_		SETDFKVM(1)A		SETDFKVM(89)A	0	0	1		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S1	1	522.2404174804688	2	522.239332	1042.46411	0.30722	0.00016044	0.044337	2.3155E-05	0.35156	0.0001836	522.2395544407779	31.935	0.2609	31.935	31.805	32.066	0					8	4	2	0	0	0	0.027442	1	11779	11779		88.954	52.827	1	10368000			30117	3950	18954	19058	29005	29005		89			-0.055421926619601436
SETDFKVMA	9	Oxidation (M)	_SETDFKVM(Oxidation (M))A_		SETDFKVM(1)A		SETDFKVM(100)A	0	0	1		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S2	2	522.2396240234375	2	522.239332	1042.46411	0.38259	0.0001998	-0.0051467	-2.6878E-06	0.37744	0.00019711	522.2392363371248	32.199	0.31174	31.969	31.787	32.098	-0.23009					11	5	3	0	0	0	0.01405	1	11908	11908		103.35	65.38	1	36127000			30118	3950	18954	19058	29006	29006		89			-0.055421926619601436
SETDFKVMA	9	Oxidation (M)	_SETDFKVM(Oxidation (M))A_		SETDFKVM(1)A		SETDFKVM(100)A	0	0	1		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2398071289062	2	522.239332	1042.46411	0.18819	9.8281E-05	0.095814	5.0038E-05	0.28401	0.00014832	522.2392640984098	32.246	0.36466	31.968	31.838	32.202	-0.27841					12	6	3	0	0	0	0.016701	1	11820	11820		99.799	57.959	1	11133000			30119	3950	18954	19058	29007	29007		89			-0.055421926619601436
SETDFKVMA	9	Oxidation (M)	_SETDFKVM(Oxidation (M))A_		SETDFKVM(1)A		SETDFKVM(60)A	0	0	1		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S4	4	522.2393798828125	2	522.239332	1042.46411	0.24156	0.00012615	-0.10833	-5.6574E-05	0.13323	6.9579E-05	522.23939204445	32.354	0.20748	31.975	31.845	32.053	-0.37924					5	3	2	0	0	0	0.090581	1	11804	11804		60.074	38.537	1	5216400			30120	3950	18954	19058	29008	29008		89			-0.055421926619601436
SETDFKVMA	9	Unmodified	_SETDFKVMA_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S1	1	514.2407836914062	2	514.241875	1026.4692	0.80418	0.00041354	-0.30289	-0.00015576	0.50128	0.00025778	514.2415504523887	37.526	0.31268	37.526	37.395	37.707	0					15	5	4	0	0	0	0.0058997	1	14034	14034		129.77	74.999	1	44324000			30121	3950	18954	19059	29009	29009					-0.042978887993513126
SETDFKVMA	9	Unmodified	_SETDFKVMA_					0	0	0		ENSG00000146457|ENST00000621533|WTAP;nc|ENSG00000146457|Q15007-2|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	HCT116MG_D190212_S2	2	514.2420043945312	2	514.241875	1026.4692	0.013712	7.0513E-06	0.74139	0.00038125	0.7551	0.00038831	514.2420324903677	37.615	0.45969	37.512	37.335	37.795	-0.10318					16	8	3	0	0	0	0.0058997	1	14107	14107		129.77	74.999	1	234370000			30122	3950	18954	19059	29010	29010					-0.042978887993513126
SETDGSTPVA	10	Unmodified	_SETDGSTPVA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	963.427490234375	1	963.426546	962.41927	0.73051	0.00070379	-0.0036876	-3.5527E-06	0.72682	0.00070024	963.4269216215567	21.656	0.20837	21.656	21.542	21.75	0					5	3	2	0	0	0	0.032253	1	7651	7651		100.37	62.397	1	3863900			30123	3119	18955	19060	29011	29011					-0.06344300203659259
SETDGSTPVA	10	Unmodified	_SETDGSTPVA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	963.4255981445312	1	963.426546	962.41927	0.51873	0.00049975	-0.21284	-0.00020506	0.30589	0.0002947	963.426173731942	21.89	0.36448	21.505	21.323	21.687	-0.38503					11	6	2	0	0	0	0.011286	1	7741	7741		141.83	87.053	1	18386000			30124	3119	18955	19060	29012	29012					-0.06344300203659259
SETDGSTPVA	10	Unmodified	_SETDGSTPVA_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	963.4285888671875	1	963.426546	962.41927	0.61937	0.00059672	0.66071	0.00063655	1.2801	0.0012333	963.4269761558548	21.596	0.26451	21.615	21.483	21.747	0.018446					6	4	2	0	0	0	0.032253	1	7568	7568		100.37	54.351	1	2546300			30125	3119	18955	19060	29013	29013					-0.06344300203659259
SETELEAEAVA	11	Unmodified	_SETELEAEAVA_					0	0	0			REV__ARMCX5|p.K45E|1|0.21|ENSG00000125962|chrX:102602274-102602274|A/G|missense_variant	REV__ARMCX5|p.K45E|1|0.21|ENSG00000125962|chrX:102602274-102602274|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	574.7703857421875	2	574.769508	1147.52446	0.39687	0.00022811	1.2102	0.00069561	1.6071	0.00092372	574.7701158026268	33.946	0.3656	33.946	33.815	34.181	0					12	6	3	0	0	0	0.70073	1	12585	12585		21.537	4.4241	1	18153000	+		30126	9987	18956	19061	29014	29014					-0.043398037978931825
SETELKDTY	9	Unmodified	_SETELKDTY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S2	2	543.2540283203125	2	543.253494	1084.49243	0.49799	0.00027053	0.76764	0.00041702	1.2656	0.00068755	543.2537512253626	27.971	0.25798	27.629	27.5	27.758	-0.34201					7	4	2	0	0	0	0.012531	1	10201	10201		107.1	50.923	1	24381000			30127	5366	18957	19062	29015	29015					-0.0464317148102964
SETELKDTY	9	Unmodified	_SETELKDTY_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	HCT116MG_D190212_S3	3	543.2542114257812	2	543.253494	1084.49243	0.49843	0.00027077	0.26695	0.00014502	0.76538	0.0004158	543.253457051901	27.883	0.31206	27.694	27.569	27.881	-0.18847					12	5	3	0	0	0	0.0038512	1	10079	10079		152.89	77.957	1	7978800			30128	5366	18957	19062	29016	29016					-0.0464317148102964
SETFHWTCK	9	Unmodified	_SETFHWTCK_					0	0	0			REV__FRMPD1|p.S1460I|1|0.42|ENSG00000070601|chr9:37746411-37746411|G/T|missense_variant	REV__FRMPD1|p.S1460I|1|0.42|ENSG00000070601|chr9:37746411-37746411|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	569.2989501953125	2	569.752941	1137.49133	0.34372	0.00019583	-1.0551	-0.00060112	-0.71133	-0.00040528	569.7522194450785	25.478	0.20933	25.109	24.978	25.187	-0.36914					5	3	2	0	0	0	0.23301	1	9148	9148		15.847	5.7733	1	6794400	+		30129	10756	18958	19063	29017	29017					-0.07191664330935055
SETFVRSGP	9	Unmodified	_SETFVRSGP_					0	0	0			REV__ENSG00000185033|ENST00000411539|SEMA4B	REV__ENSG00000185033|ENST00000411539|SEMA4B	MULTI-MSMS	HCT116MG_D190212_S4	4	491.7270812988281	2	490.245806	978.47706	0.069408	3.4027E-05	0.2389	0.00011712	0.30831	0.00015115	490.24588827357394	27.796	0.40584	27.475	27.252	27.658	-0.32157					16	7	4	0	0	0	0.41881	1	9962	9962		21.537	4.4241	1	30748000	+		30130	13822	18959	19064	29018	29018					-0.013039934875678227
SETGAGKHVP	10	Unmodified	_SETGAGKHVP_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S1	1	491.7511901855469	2	491.751256	981.487959	0.3328	0.00016365	-0.079626	-3.9156E-05	0.25317	0.0001245	491.75118972756906	16.499	0.57297	16.499	16.421	16.994	0					14	10	2	0	0	0	0.15126	1	5580	5580		63.961	36.332	1	5910200			30131	1325	18960	19065	29019	29019					-0.0035259111327832215
SETGAGKHVP	10	Unmodified	_SETGAGKHVP_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;nc|ENSG00000198033|P0DPH7-2|TUBA3C;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;TUBA3C|p.G144Afs*24|1|0.32|ENSG00000198033|chr13:19177554-19177554|A/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;TUBA3E|p.Q176Rfs*14|1|0.58|ENSG00000152086|chr2:130194316-130194316|G/-|frameshift_variant;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S2	2	491.7510070800781	2	491.751256	981.487959	0.30012	0.00014759	-0.092407	-4.5441E-05	0.20772	0.00010214	491.75114068275946	17.04	0.62586	16.691	16.561	17.187	-0.34933					21	11	2	0	0	0	0.011502	1	5786	5786		140.63	102.46	1	25309000			30132	1325	18960	19065	29020	29020					-0.0035259111327832215
SETHLLYVA	9	Unmodified	_SETHLLYVA_					0	0	0		ENSG00000164062|ENST00000296456|APEH;ENST00000463995.5_1_3:49713127-49713790:+|nuORF	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7721557617188	2	516.771657	1031.52876	0.34518	0.00017838	0.031798	1.6432E-05	0.37698	0.00019481	516.7715789078427	42.421	0.31212	42.351	42.221	42.533	-0.069984					8	5	2	0	0	0	0.1037	1	16079	16079		57.471	19.497	1	33745000			30133	4662	18961	19066	29021	29021					0.014257502063401262
SETHLLYVA	9	Unmodified	_SETHLLYVA_					0	0	0		ENSG00000164062|ENST00000296456|APEH;ENST00000463995.5_1_3:49713127-49713790:+|nuORF	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MULTI-MSMS	HCT116MG_D190212_S3	3	516.771728515625	2	516.771657	1031.52876	0.31358	0.00016205	-0.0083865	-4.3339E-06	0.30519	0.00015771	516.771601429363	42.7	0.26028	42.396	42.249	42.509	-0.30352					8	4	2	0	0	0	0.1037	1	15930	15930		57.471	25.166	1	11579000			30134	4662	18961	19066	29022	29022					0.014257502063401262
SETHLLYVA	9	Unmodified	_SETHLLYVA_					0	0	0		ENSG00000164062|ENST00000296456|APEH;ENST00000463995.5_1_3:49713127-49713790:+|nuORF	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MSMS	HCT116MG_D190212_S4	4	516.7719116210938	2	516.771657	1031.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.865	1	42.49	41.99	42.99	-0.37493								0	0	0	0.69648	1	15770	15770		19.257	2.1441	1				30135	4662	18961	19066	29023	29023					0.014257502063401262
SETHNLKPN	9	Unmodified	_SETHNLKPN_					0	0	0		ENST00000332981.9_1_14:62016967-62017273:+|nuORF	ENST00000332981.9_1_14:62016967-62017273:+|nuORF	ENST00000332981.9_1_14:62016967-62017273:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2603149414062	2	520.261988	1038.50942	0.23741	0.00012352	-3.116	-0.0016211	-2.8786	-0.0014976	520.2606069748755	39.005	0.15546	38.704	38.613	38.768	-0.30137					4	2	2	0	0	0	0.55223	1	14491	14491		13.906	0	1	3781500			30136	7172	18962	19067	29024	29024					-0.008292060845633387
SETKIFTA	8	Unmodified	_SETKIFTA_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	HCT116MG_D190212_S1	1	448.74005126953125	2	448.739825	895.465098	0.070504	3.1638E-05	0.11405	5.1177E-05	0.18455	8.2815E-05	448.7397802489759	33.912	0.41779	33.912	33.763	34.181	0					12	7	3	0	0	0	0.33298	1	12569	12569		56.177	27.69	1	16578000			30137	3820	18963	19068	29025	29025					0.013183897692329083
SETKIFTA	8	Unmodified	_SETKIFTA_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	HCT116MG_D190212_S2	2	448.7397766113281	2	448.739825	895.465098	0.1414	6.3453E-05	-0.15938	-7.1521E-05	-0.01798	-8.0686E-06	448.739647987318	34.169	0.31137	33.993	33.812	34.124	-0.17512					10	5	3	0	0	0	0.12475	1	12705	12705		89.401	47.306	1	73445000			30138	3820	18963	19068	29026	29026					0.013183897692329083
SETKIFTA	8	Unmodified	_SETKIFTA_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	HCT116MG_D190212_S2	2	896.4714965820312	1	896.472374	895.465098	1.0733	0.00096217	-0.75745	-0.00067903	0.31584	0.00028314	896.4712359035774	34.169	0.25952	33.993	33.812	34.072	-0.17512					7	4	2	0	0	0	0.23645	1	12710	12710		66.457	30.412	1	39466000			30139	3820	18963	19068	29027	29027					0.013183897692329083
SETKSGVAP	9	Unmodified	_SETKSGVAP_					0	0	0		ENST00000550699.5_1_12:58109828-58111744:+|nuORF;ENST00000549307.5_1_12:58109828-58113249:+|nuORF;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	ENST00000550699.5_1_12:58109828-58111744:+|nuORF	ENST00000550699.5_1_12:58109828-58111744:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	438.2269592285156	2	438.227082	874.439611	0.14809	6.4896E-05	0.024561	1.0763E-05	0.17265	7.5659E-05	438.2270720994264	17.959	0.36493	17.959	17.776	18.141	0					10	6	2	0	0	0	0.071914	1	6152	6152		63.961	9.187	1	8552600			30140	3353	18964	19069	29028	29028					-0.0026308475319183344
SETKSGVAP	9	Unmodified	_SETKSGVAP_					0	0	0		ENST00000550699.5_1_12:58109828-58111744:+|nuORF;ENST00000549307.5_1_12:58109828-58113249:+|nuORF;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	ENST00000550699.5_1_12:58109828-58111744:+|nuORF	ENST00000550699.5_1_12:58109828-58111744:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	438.2270202636719	2	438.227082	874.439611	-0.29929	-0.00013116	0.4629	0.00020286	0.16361	7.1698E-05	438.22720258622627	18.45	0.31363	18.087	17.904	18.217	-0.36325					12	5	3	0	0	0	0.026272	1	6342	6342		90.135	19.001	1	54564000			30141	3353	18964	19069	29029	29029					-0.0026308475319183344
SETKSGVAP	9	Unmodified	_SETKSGVAP_					0	0	0		ENST00000550699.5_1_12:58109828-58111744:+|nuORF;ENST00000549307.5_1_12:58109828-58113249:+|nuORF;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	ENST00000550699.5_1_12:58109828-58111744:+|nuORF	ENST00000550699.5_1_12:58109828-58111744:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	875.4468994140625	1	875.446888	874.439611	0.47331	0.00041436	-0.15798	-0.0001383	0.31533	0.00027606	875.4467996298781	18.45	0.36465	18.087	17.956	18.321	-0.36325					8	6	2	0	0	0	0.030039	1	6358	6358		86.332	18.251	1	11281000			30142	3353	18964	19069	29030	29030					-0.0026308475319183344
SETKVFTA	8	Unmodified	_SETKVFTA_					0	0	0		UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	441.73187255859375	2	441.732	881.449448	0.28032	0.00012383	0.078742	3.4783E-05	0.35906	0.00015861	441.7318891898629	28.993	0.4179	28.993	28.798	29.216	0					13	7	3	0	0	0	0.051049	1	10577	10577		122.18	60.822	1	15142000			30143	3459	18965	19070	29031	29031					0.003981032521892303
SETKVFTA	8	Unmodified	_SETKVFTA_					0	0	0		UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	882.45703125	1	882.456724	881.449448	0.94201	0.00083129	-0.45351	-0.00040021	0.4885	0.00043108	882.4559694521846	28.981	0.26111	28.981	28.851	29.112	0					6	4	2	0	0	0	0.1893	1	10603	10603		75.761	29.74	1	3810000			30144	3459	18965	19070	29032	29032					0.003981032521892303
SETKVFTA	8	Unmodified	_SETKVFTA_					0	0	0		UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	441.7320861816406	2	441.732	881.449448	0.45896	0.00020274	0.0065276	2.8834E-06	0.46549	0.00020562	441.73189797707187	29.564	0.36154	29.263	29.082	29.444	-0.30095					12	6	3	0	0	0	0.065346	1	10835	10835		106.94	48.261	1	70897000			30145	3459	18965	19070	29033	29033					0.003981032521892303
SETKVFTA	8	Unmodified	_SETKVFTA_					0	0	0		UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	882.457763671875	1	882.456724	881.449448	1.137	0.0010033	-0.20761	-0.00018321	0.92936	0.00082012	882.4562864052543	29.564	0.30997	29.263	29.082	29.392	-0.30095					11	5	3	0	0	0	0.1893	1	10838	10838		75.761	31.903	1	39071000			30146	3459	18965	19070	29034	29034					0.003981032521892303
SETKVFTA	8	Unmodified	_SETKVFTA_					0	0	0		UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	441.7319030761719	2	441.732	881.449448	0.28322	0.00012511	0.20055	8.8589E-05	0.48377	0.0002137	441.7319316265961	29.541	0.52686	29.304	29.083	29.61	-0.23655					16	9	3	0	0	0	0.095352	1	10726	10726		96.111	28.03	1	18731000			30147	3459	18965	19070	29035	29035					0.003981032521892303
SETKVFTA	8	Unmodified	_SETKVFTA_					0	0	0		UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant;UBAP2|p.K381Efs*18|1|0.03|ENSG00000137073|chr9:33948506-33948507|-/G|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	UBAP2|p.L380Sfs*2|1|0.03|ENSG00000137073|chr9:33948507-33948508|-/TT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	882.4578857421875	1	882.456724	881.449448	0.91084	0.00080378	0.0035534	3.1357E-06	0.9144	0.00080692	882.4569480006566	29.502	0.26084	29.266	29.135	29.396	-0.23655					7	4	2	0	0	0	0.095352	1	10752	10752		96.111	43.843	1	4323400			30148	3459	18965	19070	29036	29036					0.003981032521892303
SETLLLRARRA	11	Unmodified	_SETLLLRARRA_					0	0	0		ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENST00000545209.1_1_12:121202804-121206399:-|nuORF	MSMS	HCT116MG_D190212_S2	2	643.3871459960938	2	643.388585	1284.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.36	1	49.206	48.706	49.706	-0.15405								0	0	0	0.94538	1	18889	18889		8.7454	0	1				30149	8714	18966	19071	29037	29037					0.1316264636568576
SETLYQELPPE	11	Unmodified	_SETLYQELPPE_					0	0	0		ENSG00000135541|ENST00000265602|AHI1	ENSG00000135541|ENST00000265602|AHI1	ENSG00000135541|ENST00000265602|AHI1	MSMS	HCT116MG_D190212_S4	4	653.3155517578125	2	653.314083	1304.61361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.507	1	40.128	39.628	40.628	-0.37828								0	0	0	0.93717	1	14863	14863		13.042	0	1				30150	3356	18967	19072	29038	29038					-0.02650968838361223
SETNDYRVLDP	11	Unmodified	_SETNDYRVLDP_					0	0	0			REV__ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant	REV__ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	437.2250061035156	3	436.87373	1307.59936	0.22698	9.9161E-05	0.19576	8.5523E-05	0.42274	0.00018468	436.87388200163855	19.602	0.15587	19.408	19.278	19.434	-0.19367					4	2	2	0	0	0	0.36593	1	6623	6623		0.45452	0	1	3757400	+		30151	9939	18968	19073	29039	29039					-0.042136212666719075
SETNIVRY	8	Unmodified	_SETNIVRY_					0	0	0		ENST00000510885.2_1_4:57459582-57460608:+|nuORF;ENSG00000178445|ENST00000321612|GLDC	ENST00000510885.2_1_4:57459582-57460608:+|nuORF	ENST00000510885.2_1_4:57459582-57460608:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.7510986328125	2	491.253631	980.49271	0.30868	0.00015164	-0.17375	-8.5356E-05	0.13492	6.6282E-05	491.25364606225105	26.985	0.421	26.632	26.45	26.871	-0.35254					10	7	2	0	0	0	0.24939	1	9753	9753		23.148	0	1	6614600			30152	5503	18969	19074	29040	29040					0.0016829302946916869
SETNRIEVA	9	Unmodified	_SETNRIEVA_					0	0	0		LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant;LRP5|p.D1065Gfs*73|1|0.31|ENSG00000162337|chr11:68423650-68423651|-/G|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5	LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant	LRP5|p.A1277Pfs*162|1|0.14|ENSG00000162337|chr11:68433664-68433664|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	509.7286071777344	2	509.76182	1017.50909	0.22884	0.00011665	0.33831	0.00017246	0.56714	0.00028911	509.7619183530935	26.95	0.31272	26.781	26.651	26.964	-0.16933					6	5	2	0	0	0	0.0896	1	9684	9684		61.602	15.902	1	6429300			30153	9305	18970	19075	29041	29041					0.0010337419556663008
SETPYVDRTPG	11	Unmodified	_SETPYVDRTPG_					0	0	0		ENSG00000100056|ENST00000252137|ESS2;ENST00000472073.1_1_22:19121711-19131632:-|nuORF;ENST00000434568.5_1_22:19121711-19126708:-|nuORF	ENSG00000100056|ENST00000252137|ESS2	ENSG00000100056|ENST00000252137|ESS2	MULTI-MSMS	HCT116MG_D190212_S4	4	611.2918701171875	2	611.290942	1220.56733	0.94364	0.00057684	-0.67078	-0.00041004	0.27286	0.0001668	611.2903577316655	33.975	0.66997	33.59	33.263	33.933	-0.38426					24	12	3	0	0	0	0.74191	1	12362	12362		5.7319	1.203	1	2528600			30154	1659	18971	19076	29042	29042					-0.03412988949821738
SETQIGFEI	9	Unmodified	_SETQIGFEI_					0	0	0		ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-4|DNAI7;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2537841796875	2	512.253297	1022.49204	0.41875	0.00021451	0.485	0.00024844	0.90375	0.00046295	512.2535026689234	34.351	0.83352	34.351	33.867	34.701	0					32	15	3	0	0	0	0.1754	1	12667	12667		43.858	0	1	11650000			30155	2604	18972	19077	29043	29043					-0.018305464102354563
SETQTSHLP	9	Unmodified	_SETQTSHLP_					0	0	0		ENST00000554708.1_1_14:23547358-23548244:-|nuORF;ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ENST00000554708.1_1_14:23547358-23548244:-|nuORF	ENST00000554708.1_1_14:23547358-23548244:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	500.24066162109375	2	500.240721	998.466889	0.30015	0.00015015	0.28715	0.00014364	0.5873	0.00029379	500.24085880861315	25.317	0.73065	25.317	25.144	25.875	0					22	13	2	0	0	0	0.016701	1	9115	9115		99.799	35.838	1	5013700			30156	23	18973	19078	29044	29044					-0.0324060121280354
SETQTSHLP	9	Unmodified	_SETQTSHLP_					0	0	0		ENST00000554708.1_1_14:23547358-23548244:-|nuORF;ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ENST00000554708.1_1_14:23547358-23548244:-|nuORF	ENST00000554708.1_1_14:23547358-23548244:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	500.24090576171875	2	500.240721	998.466889	0.50827	0.00025426	0.072864	3.645E-05	0.58113	0.00029071	500.2407389991992	25.806	1.0371	25.437	25.239	26.276	-0.36914					48	19	3	0	0	0	0.01405	2	9305	9305;9540		103.35	39.393	1	30614000			30157	23	18973	19078	29045;29046	29045					-0.0324060121280354
SETQTSHLP	9	Unmodified	_SETQTSHLP_					0	0	0		ENST00000554708.1_1_14:23547358-23548244:-|nuORF;ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ENST00000554708.1_1_14:23547358-23548244:-|nuORF	ENST00000554708.1_1_14:23547358-23548244:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	500.24053955078125	2	500.240721	998.466889	0.56221	0.00028124	0.16501	8.2543E-05	0.72721	0.00036378	500.24073681141726	25.419	1.198	25.313	25.1	26.298	-0.10618					40	22	2	0	0	0	0.010834	2	9080	9080;9330		111.29	44.83	1	11321000			30158	23	18973	19078	29047;29048	29047					-0.0324060121280354
SETQTSHLP	9	Unmodified	_SETQTSHLP_					0	0	0		ENST00000554708.1_1_14:23547358-23548244:-|nuORF;ACIN1|p.E945Lfs*13|1|0.03|ENSG00000100813|chr14:23063514-23063515|-/AG|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ENST00000554708.1_1_14:23547358-23548244:-|nuORF	ENST00000554708.1_1_14:23547358-23548244:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	500.24102783203125	2	500.240721	998.466889	0.4451	0.00022266	0.09936	4.9704E-05	0.54446	0.00027236	500.2408018603938	25.703	0.83272	25.413	25.204	26.036	-0.29023					19	15	2	0	0	0	0.027442	1	9161	9161		88.954	39.4	1	2659600			30159	23	18973	19078	29049	29049					-0.0324060121280354
SETRADPGP	9	Unmodified	_SETRADPGP_					0	0	0		ENST00000512792.2_1_12:112194042-112194222:+|nuORF;ENST00000508303.5_1_12:112186258-112194701:+|nuORF	ENST00000512792.2_1_12:112194042-112194222:+|nuORF	ENST00000512792.2_1_12:112194042-112194222:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	465.2196960449219	2	465.219788	928.425024	0.2442	0.00011361	-0.3099	-0.00014417	-0.065704	-3.0567E-05	465.21966466485674	16.79	0.31271	16.79	16.681	16.994	0					8	5	2	0	0	0	0.64512	1	5714	5714		8.5933	0	1	1762800			30160	8475	18974	19079	29050	29050					-0.0420515690133243
SETRADPGP	9	Unmodified	_SETRADPGP_					0	0	0		ENST00000512792.2_1_12:112194042-112194222:+|nuORF;ENST00000508303.5_1_12:112186258-112194701:+|nuORF	ENST00000512792.2_1_12:112194042-112194222:+|nuORF	ENST00000512792.2_1_12:112194042-112194222:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	465.219788	928.425024	0.2442	0.00011361	-0.3099	-0.00014417	-0.065704	-3.0567E-05	465.21966466485674	16.79	0.31271	16.79	16.681	16.994	0	0	0	NaN	8.5933	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1762800			30161	8475	18974	19079							-0.0420515690133243
SETSGIARP	9	Unmodified	_SETSGIARP_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	HCT116MG_D190212_S1	1	459.2381286621094	2	459.237981	916.461409	0.079178	3.6361E-05	-0.33503	-0.00015386	-0.25585	-0.0001175	459.23794361329556	22.938	0.57266	22.938	22.637	23.21	0					20	10	3	0	0	0	0.053544	1	8176	8176		72.968	14.289	1	4676800			30162	9371	18975	19080	29051	29051					-0.00016280004626878508
SETSGIARP	9	Unmodified	_SETSGIARP_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2380065917969	2	459.237981	916.461409	0.10373	4.7635E-05	0.09125	4.1905E-05	0.19498	8.954E-05	459.23800044789886	23.573	1.039	23.19	22.312	23.351	-0.38324					42	19	3	0	0	0	0.034046	2	8287	8287;8353		82.529	18.293	1	34064000			30163	9371	18975	19080	29052;29053	29052					-0.00016280004626878508
SETSGIARP	9	Unmodified	_SETSGIARP_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	HCT116MG_D190212_S2	2	917.4686279296875	1	917.468686	916.461409	0.6329	0.00058066	-0.35552	-0.00032617	0.27738	0.00025449	917.4682251501753	23.59	0.46702	23.207	22.832	23.299	-0.38324					12	8	2	0	0	0	0.0062667	1	8436	8436		126.57	37.662	1	6672000			30164	9371	18975	19080	29054	29054					-0.00016280004626878508
SETSGIARP	9	Unmodified	_SETSGIARP_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	HCT116MG_D190212_S3	3	459.2376403808594	2	459.237981	916.461409	0.32848	0.00015085	-0.51932	-0.00023849	-0.19084	-8.7642E-05	459.2377274256555	22.974	0.97742	22.955	22.231	23.208	-0.018869					41	18	3	0	0	0	0.034046	2	7964	7964;8031		82.529	18.293	1	15373000			30165	9371	18975	19080	29055;29056	29055					-0.00016280004626878508
SETSGIARP	9	Unmodified	_SETSGIARP_					0	0	0		nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	nc|ENSG00000047849|P27816-6|MAP4	nc|ENSG00000047849|P27816-6|MAP4	MULTI-MSMS	HCT116MG_D190212_S4	4	459.23760986328125	2	459.237981	916.461409	-0.035185	-1.6158E-05	-0.13181	-6.0534E-05	-0.167	-7.6693E-05	459.2378846847113	23.31	0.83664	23.062	22.435	23.272	-0.24775					22	15	2	0	0	0	0.053544	1	8091	8091		72.968	23.035	1	3884700			30166	9371	18975	19080	29057	29057					-0.00016280004626878508
SETSLIGTA	9	Unmodified	_SETSLIGTA_					0	0	0		ENSG00000104549|ENST00000265896|SQLE;SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-MSMS	HCT116MG_D190212_S3	3	878.44677734375	1	878.446553	877.439277	0.89313	0.00078456	0.55201	0.00048491	1.4451	0.0012695	878.4467044898456	37.862	0.29075	37.561	37.491	37.781	-0.30137					17	14	2	0	0	0	0.013464	1	14011	14011		104.8	37.455	1	9508400			30167	1940	18976	19081	29058	29058					-0.004345044730257541
SETSLIGTAA	10	Unmodified	_SETSLIGTAA_					0	0	0		ENSG00000104549|ENST00000265896|SQLE;SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-MSMS	HCT116MG_D190212_S2	2	949.486328125	1	949.483667	948.476391	0.46808	0.00044444	0.56251	0.00053409	1.0306	0.00097853	949.484542559802	38.113	0.20674	38.02	37.908	38.115	-0.093006					5	3	2	0	0	0	0.016539	1	14328	14328		128.37	64.129	1	15500000			30168	1940	18977	19082	29059	29059					9.1670727329074E-05
SETSLIGTAA	10	Unmodified	_SETSLIGTAA_					0	0	0		ENSG00000104549|ENST00000265896|SQLE;SQLE|p.Y455Lfs*21|1|0.14|ENSG00000104549|chr8:125018642-125018643|-/T|frameshift_variant	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-MSMS	HCT116MG_D190212_S3	3	949.4843139648438	1	949.483667	948.476391	0.75731	0.00071906	0.1467	0.00013929	0.90401	0.00085834	949.4841169437815	38.316	0.25911	38.014	37.885	38.144	-0.30137					6	4	2	0	0	0	0.047709	1	14215	14215		88.904	24.667	1	4229400			30169	1940	18977	19082	29060	29060					9.1670727329074E-05
SETVPKAEAGP	11	Unmodified	_SETVPKAEAGP_					0	0	0		nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;ENST00000477340.5_1_20:62339420-62365174:+|nuORF	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	MSMS	HCT116MG_D190212_S3	3	543.2777099609375	2	543.277303	1084.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.964	1	24.861	24.361	25.361	-0.10323								0	0	0	0.91433	1	8891	8891		18.146	0.7037	1				30170	6120	18978	19083	29061	29061					0.001165275098173879
SEVAQHLAA	9	Unmodified	_SEVAQHLAA_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	HCT116MG_D190212_S2	2	463.240478515625	2	463.240524	924.466495	0.11779	5.4565E-05	0.12868	5.9608E-05	0.24647	0.00011417	463.24060751392096	25.686	0.20739	25.317	25.239	25.446	-0.36914					5	3	2	0	0	0	0.19461	1	9288	9288		41.84	7.4379	1	9222900			30171	2447	18979	19084	29062	29062					0.0012402385799532567
SEVAQHLAA	9	Unmodified	_SEVAQHLAA_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	463.240524	924.466495	0.46111	0.00021361	-0.64655	-0.00029951	-0.18544	-8.5904E-05	463.2399915834892	25.388	0.26004	25.282	25.1	25.36	-0.10618	-0.017503	-0.00047023	NaN	41.84	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3891600			30172	2447	18979	19084							0.0012402385799532567
SEVAVIGF	8	Unmodified	_SEVAVIGF_					0	0	0		ENSG00000185624|ENST00000331483|P4HB;P4HB|p.N387Tfs*118|1|0.25|ENSG00000185624|chr17:81845888-81845888|T/-|frameshift_variant	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	HCT116MG_D190212_S2	2	821.4404907226562	1	821.440346	820.433069	0.86012	0.00070654	-0.45559	-0.00037424	0.40453	0.00033229	821.4400339744053	54.263	0.25658	54.073	53.945	54.201	-0.1894					11	4	3	0	0	0	0.060038	1	20888	20888		112.56	13.751	1	48424000			30173	5837	18980	19085	29063	29063					0.01567022086101133
SEVAVSVL	8	Unmodified	_SEVAVSVL_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;NCAPG|p.I662Nfs*7|1|0.37|ENSG00000109805|chr4:17834391-17834392|-/A|frameshift_variant;ENST00000509719.1_1_4:17818900-17824753:+|nuORF;ENST00000514176.5_1_4:17816533-17825367:+|nuORF;NCAPG|p.G315Efs*4|1|0.05|ENSG00000109805|chr4:17817428-17817429|-/A|frameshift_variant;NCAPG|p.L316Nfs*11|1|0.05|ENSG00000109805|chr4:17817429-17817430|-/CA|frameshift_variant	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	HCT116MG_D190212_S2	2	803.4515991210938	1	803.450911	802.443634	0.98002	0.0007874	-0.17935	-0.0001441	0.80067	0.0006433	803.4506694013919	46.454	0.36029	46.343	46.162	46.522	-0.11121					10	6	2	0	0	0	0.13911	1	17696	17696		86.121	11.725	1	39344000			30174	2220	18981	19086	29064	29064					0.03451004740531971
SEVDLLHFQSQ	11	Unmodified	_SEVDLLHFQSQ_					0	0	0		RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant;nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	RPAP1|p.S869Qfs*34|1|0.48|ENSG00000103932|chr15:41522902-41522903|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	434.8819274902344	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2469	1	4.1578	3.6578	4.6578	-0.089082								0	0	0	0.9598	1	1345	1345		0.40827	0	1				30175	1910	18982	19087	29065	29065					-0.013567270243811436
SEVDLTRSF	9	Unmodified	_SEVDLTRSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	HCT116MG_D190212_S1	1	527.2645263671875	2	527.264196	1052.51384	0.64628	0.00034076	0.084392	4.4497E-05	0.73067	0.00038526	527.2641153733111	41.71	0.25992	41.71	41.55	41.81	0					12	4	3	0	0	0	0.0064416	1	15725	15725		125.04	53.116	1	17660000			30176	1743	18983	19088	29066	29066					-0.01031741661677188
SEVDLTRSF	9	Unmodified	_SEVDLTRSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	HCT116MG_D190212_S2	2	527.2642822265625	2	527.264196	1052.51384	0.57067	0.0003009	-0.2068	-0.00010904	0.36388	0.00019186	527.2640483119047	41.695	0.41204	41.627	41.396	41.808	-0.068199					12	7	2	0	0	0	0.00446	2	15743	15743;15803		143.91	58.637	1	138620000			30177	1743	18983	19088	29067;29068	29067					-0.01031741661677188
SEVDLTRSF	9	Unmodified	_SEVDLTRSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	HCT116MG_D190212_S3	3	527.26416015625	2	527.264196	1052.51384	0.3438	0.00018127	-0.0020613	-1.0868E-06	0.34174	0.00018019	527.2641529223022	41.949	0.30048	41.646	41.48	41.781	-0.30257					13	5	3	0	0	0	0.0034381	1	15617	15617		160.69	75.418	1	24457000			30178	1743	18983	19088	29069	29069					-0.01031741661677188
SEVDLTRSF	9	Unmodified	_SEVDLTRSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	HCT116MG_D190212_S4	4	527.2645874023438	2	527.264196	1052.51384	0.43389	0.00022877	0.39643	0.00020902	0.83031	0.00043779	527.264351709818	42.015	0.30456	41.638	41.482	41.786	-0.37637					12	5	3	0	0	0	0.01386	1	15439	15439		103.82	35.743	1	5978800			30179	1743	18983	19088	29070	29070					-0.01031741661677188
SEVELMKVA	9	Unmodified	_SEVELMKVA_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S2	2	503.26788330078125	2	503.267893	1004.52123	0.44302	0.00022296	-0.13677	-6.8832E-05	0.30625	0.00015412	503.2677567222556	40.992	0.20732	40.922	40.777	40.984	-0.069626					5	3	2	0	0	0	0.071914	1	15498	15498		63.961	34.879	1	12842000			30180	2484	18984	19089	29071	29071					0.019152746144072808
SEVESTEY	8	Unmodified	_SEVESTEY_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	943.389892578125	1	943.389098	942.381822	0.89881	0.00084793	0.15511	0.00014632	1.0539	0.00099426	943.3892249872288	26.035	0.20839	25.666	25.55	25.758	-0.36914					6	3	2	0	0	0	0.13911	1	9423	9423		86.121	19.086	1	12327000			30181	3346	18985	19090	29072	29072					-0.0916739146927057
SEVESTEY	8	Unmodified	_SEVESTEY_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	943.3883056640625	1	943.389098	942.381822	0.74812	0.00070577	-0.45637	-0.00043053	0.29175	0.00027524	943.3885158315218	25.961	0.31301	25.833	25.65	25.963	-0.12795					8	5	2	0	0	0	0.065436	1	9302	9302		106.85	20.724	1	7171000			30182	3346	18985	19090	29073	29073					-0.0916739146927057
SEVEVIHVP	9	Unmodified	_SEVEVIHVP_					0	0	0		ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;DPP9|p.F814Sfs*10|1|0.34|ENSG00000142002|chr19:4679893-4679893|A/-|frameshift_variant;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	504.77142333984375	2	504.771657	1007.52876	0.28292	0.00014281	-0.11661	-5.8864E-05	0.16631	8.3947E-05	504.771327460116	42.902	0.78172	42.902	42.69	43.472	0					24	14	2	0	0	0	0.0047811	1	16195	16195		139.54	75.981	1	12328000			30183	729	18986	19091	29074	29074					0.02529750206326753
SEVEVIHVP	9	Unmodified	_SEVEVIHVP_					0	0	0		ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;DPP9|p.F814Sfs*10|1|0.34|ENSG00000142002|chr19:4679893-4679893|A/-|frameshift_variant;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7721252441406	2	504.771657	1007.52876	0.32491	0.00016401	0.074333	3.7521E-05	0.39924	0.00020153	504.7714644989765	42.888	1.0812	42.818	42.637	43.719	-0.069984					46	20	3	0	0	0	0.0035329	2	16248	16248;16479		170.55	106.99	1	92998000			30184	729	18986	19091	29075;29076	29075					0.02529750206326753
SEVEVIHVP	9	Unmodified	_SEVEVIHVP_					0	0	0		ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;DPP9|p.F814Sfs*10|1|0.34|ENSG00000142002|chr19:4679893-4679893|A/-|frameshift_variant;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	504.77203369140625	2	504.771657	1007.52876	0.40652	0.0002052	-0.13387	-6.7576E-05	0.27265	0.00013762	504.7714564331485	43.243	1.004	42.938	42.706	43.71	-0.30472					45	24	2	0	0	0	0.027492	2	16068	16068;16296		88.904	60.417	1	21899000			30185	729	18986	19091	29077;29078	29077					0.02529750206326753
SEVEVIHVP	9	Unmodified	_SEVEVIHVP_					0	0	0		ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;DPP9|p.F814Sfs*10|1|0.34|ENSG00000142002|chr19:4679893-4679893|A/-|frameshift_variant;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000601764.5_1_19:4697564-4723732:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	504.7716369628906	2	504.771657	1007.52876	0.23857	0.00012042	0.42872	0.0002164	0.66728	0.00033683	504.7716588748784	43.232	0.70583	42.857	42.813	43.518	-0.37493					39	27	2	0	0	0	0.1037	1	15888	15888		57.471	41.624	1	12013000			30186	729	18986	19091	29079	29079					0.02529750206326753
SEVEWRGRMVP	11	Unmodified	_SEVEWRGRMVP_					0	0	0		SRP68|p.T302M|1|0.16|ENSG00000167881|chr17:76057476-76057476|G/A|missense_variant	SRP68|p.T302M|1|0.16|ENSG00000167881|chr17:76057476-76057476|G/A|missense_variant	SRP68|p.T302M|1|0.16|ENSG00000167881|chr17:76057476-76057476|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	673.34033203125	2	673.337704	1344.66085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.29	1	35.904	35.404	36.404	-0.38558								0	0	0	0.81739	1	13274	13274		30.637	7.9003	1				30187	18235	18987	19092	29080	29080					0.002310319516254822
SEVFGNKI	8	Unmodified	_SEVFGNKI_					0	0	0		tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1	tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1	tr|U7STZ4|U7STZ4_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=dxsPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	447.755859375	2	447.239993	892.465432	0.15643	6.9962E-05	0.04793	2.1436E-05	0.20436	9.1398E-05	447.24001832208745	45.323	0.30974	45.23	45.101	45.411	-0.092472					8	5	2	0	0	0	0.28869	1	17288	17288		18.135	0	1	24813000			30188	18460	18988	19093	29081	29081					0.01489809489100935
SEVFSLWKQQ	10	Unmodified	_SEVFSLWKQQ_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MSMS	HCT116MG_D190212_S3	3	625.923828125	2	626.322045	1250.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.565	1	54.269	53.769	54.769	-0.29587								0	0	0	0.96377	1	20679	20679		1.6526	0	1				30189	1501	18989	19094	29082	29082					0.014247821891785861
SEVGDTQVV	9	Unmodified	_SEVGDTQVV_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S2	2	933.4545288085938	1	933.452367	932.445091	1.0157	0.00094813	0.53417	0.00049862	1.5499	0.0014468	933.4528077378817	31.421	0.25837	31.172	31.043	31.302	-0.24883					7	4	2	0	0	0	0.0090481	1	11628	11628		115.69	40.763	1	7474100			30190	4280	18990	19095	29083	29083					-0.023834059613704994
SEVGDTQVV	9	Unmodified	_SEVGDTQVV_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S3	3	933.454345703125	1	933.452367	932.445091	0.7599	0.00070933	0.52315	0.00048833	1.283	0.0011977	933.4527996424148	31.57	0.26099	31.299	31.117	31.378	-0.27028					7	4	2	0	0	0	0.0090481	1	11556	11556		115.69	30.42	1	5452100			30191	4280	18990	19095	29084	29084					-0.023834059613704994
SEVGKLLSA	9	Unmodified	_SEVGKLLSA_					0	0	0		ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	452.2608642578125	2	452.260925	902.507297	-0.10709	-4.8433E-05	0.093372	4.2228E-05	-0.013719	-6.2045E-06	452.2608617565456	39.787	0.31185	39.787	39.605	39.917	0					9	5	2	0	0	0	0.0081783	1	14940	14940		117.84	48.733	1	40209000			30192	816	18991	19096	29085	29085					0.05214365177619129
SEVGKLLSA	9	Unmodified	_SEVGKLLSA_					0	0	0		ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	452.2607116699219	2	452.260925	902.507297	-0.10388	-4.6981E-05	0.11414	5.162E-05	0.010259	4.6395E-06	452.26089511826507	39.837	0.46537	39.764	39.584	40.05	-0.072838					20	8	4	0	0	0	0.011034	1	15004	15004		110.79	41.688	1	260680000			30193	816	18991	19096	29086	29086					0.05214365177619129
SEVGKLLSA	9	Unmodified	_SEVGKLLSA_					0	0	0		ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	903.514892578125	1	903.514573	902.507297	0.60642	0.00054791	0.1312	0.00011855	0.73762	0.00066645	903.5144867199062	39.837	0.36198	39.764	39.636	39.998	-0.072838					9	6	2	0	0	0	0.0096585	1	15008	15008		114.19	39.257	1	77108000			30194	816	18991	19096	29087	29087					0.05214365177619129
SEVGKLLSA	9	Unmodified	_SEVGKLLSA_					0	0	0		ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	452.26092529296875	2	452.260925	902.507297	-0.0044302	-2.0036E-06	0.30508	0.00013798	0.30065	0.00013597	452.2609616667613	40.023	0.42287	39.721	39.585	40.007	-0.30137					23	11	3	0	0	0	0.011034	1	14827	14827		110.79	41.688	1	93246000			30195	816	18991	19096	29088	29088					0.05214365177619129
SEVGKLLSA	9	Unmodified	_SEVGKLLSA_					0	0	0		ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	903.5169677734375	1	903.514573	902.507297	0.59389	0.00053658	0.24051	0.0002173	0.83439	0.00075389	903.5147348148394	40.023	0.20586	39.721	39.645	39.851	-0.30137					8	4	2	0	0	0	0.011132	1	14858	14858		110.55	46.592	1	15395000			30196	816	18991	19096	29089	29089					0.05214365177619129
SEVGKLLSA	9	Unmodified	_SEVGKLLSA_					0	0	0		ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	452.2608337402344	2	452.260925	902.507297	0.35555	0.0001608	-0.1683	-7.6118E-05	0.18724	8.4682E-05	452.2607529403244	40.169	0.29765	39.79	39.643	39.941	-0.37936					13	7	2	0	0	0	0.0081783	1	14712	14712		117.84	48.733	1	30952000			30197	816	18991	19096	29090	29090					0.05214365177619129
SEVGKLLSA	9	Unmodified	_SEVGKLLSA_					0	0	0		ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	903.5137329101562	1	903.514573	902.507297	0.73266	0.00066197	-0.16204	-0.00014641	0.57062	0.00051556	903.5144491020455	40.16	0.19646	39.78	39.668	39.864	-0.37936					7	4	2	0	0	0	0.016412	1	14730	14730		100.09	38.733	1	5226100			30198	816	18991	19096	29091	29091					0.05214365177619129
SEVGKLLSA	9	Unmodified	_SEVGKLLSA_					0	0	0		ENST00000468778.5_1_2:74650926-74652825:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	ENST00000468778.5_1_2:74650926-74652825:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		1	903.514573	902.507297	0.55943	0.00050545	0.15325	0.00013846	0.71268	0.00064392	903.5143459956236	39.819	0.15538	39.819	39.709	39.865	0	0.047778	1.5873E-05	NaN	114.19	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5638600			30199	816	18991	19096							0.05214365177619129
SEVGSVVSF	9	Unmodified	_SEVGSVVSF_					0	0	0		CSTF2T|p.I190Ffs*11|1|0.29|ENSG00000177613|chr10:51698982-51698982|T/-|frameshift_variant;ENSG00000177613|ENST00000331173|CSTF2T	CSTF2T|p.I190Ffs*11|1|0.29|ENSG00000177613|chr10:51698982-51698982|T/-|frameshift_variant	CSTF2T|p.I190Ffs*11|1|0.29|ENSG00000177613|chr10:51698982-51698982|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	910.45263671875	1	910.451639	909.444362	1.0083	0.00091799	-0.23385	-0.00021291	0.77443	0.00070508	910.4511786509103	47.897	0.20552	47.764	47.636	47.841	-0.13281					6	3	2	0	0	0	0.004194	1	18293	18293		147.83	86.474	1	25297000			30200	612	18992	19097	29092	29092					-0.013982006104129141
SEVGSVVSF	9	Unmodified	_SEVGSVVSF_					0	0	0		CSTF2T|p.I190Ffs*11|1|0.29|ENSG00000177613|chr10:51698982-51698982|T/-|frameshift_variant;ENSG00000177613|ENST00000331173|CSTF2T	CSTF2T|p.I190Ffs*11|1|0.29|ENSG00000177613|chr10:51698982-51698982|T/-|frameshift_variant	CSTF2T|p.I190Ffs*11|1|0.29|ENSG00000177613|chr10:51698982-51698982|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	911.455078125	1	910.451639	909.444362	0.64937	0.00059122	-0.14053	-0.00012795	0.50883	0.00046327	910.4513278228994	48.117	0.26092	47.801	47.671	47.932	-0.31596					8	4	2	0	0	0	0.065014	1	18101	18101		67.344	37.119	1	6619500			30201	612	18992	19097	29093	29093					-0.013982006104129141
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S1	1	563.7802124023438	2	563.780013	1125.54547	0.60284	0.00033987	-0.29638	-0.00016709	0.30646	0.00017278	563.7798434320944	28.294	0.36905	28.294	28.113	28.482	0					16	6	3	0	0	0	0.00015504	1	10303	10303		197.17	135.81	1	192580000			30202	3846	18993	19098	29094	29094					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	HCT116MG_D190212_S1	1	376.1895446777344	3	376.189101	1125.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.312	1	28.312	27.812	28.812	0								0	0	0	0.034673	1	10309	10309		61.602	36.611	1				30203	3846	18993	19098	29095	29095					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S2	2	563.7803344726562	2	563.780013	1125.54547	0.39304	0.00022159	0.23916	0.00013484	0.6322	0.00035642	563.7801104655587	28.744	0.40808	28.428	28.249	28.657	-0.31613					27	7	5	0	0	0	0.0030529	3	10479	10449;10469;10479		181.33	110.19	1	1038399999.9999999			30204	3846	18993	19098	29096;29097;29098	29098					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S2	2	376.1888732910156	3	376.189101	1125.54547	-0.23372	-8.7924E-05	0.15352	5.7752E-05	-0.080206	-3.0173E-05	376.1890519527423	28.737	0.30565	28.421	28.249	28.555	-0.31613					15	5	4	0	0	0	0.050578	1	10499	10499		57.722	31.454	1	159570000			30205	3846	18993	19098	29099	29099					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S2	2	1126.552001953125	1	1126.55275	1125.54547	0.52112	0.00058706	-0.17085	-0.00019248	0.35026	0.00039459	1126.5519332550407	28.715	0.20343	28.399	28.301	28.504	-0.31613					5	3	2	0	0	0	0.00015504	1	10503	10503		197.17	108.26	1	29839000			30206	3846	18993	19098	29100	29100					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S3	3	563.780517578125	2	563.780013	1125.54547	0.64489	0.00036358	-0.23014	-0.00012975	0.41475	0.00023383	563.7798273501136	28.669	0.67676	28.463	28.229	28.906	-0.20593					33	12	5	0	0	0	1.3005E-08	1	10371	10371		232.51	150.9	1	247720000			30207	3846	18993	19098	29101	29101					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	HCT116MG_D190212_S3	3	376.1890869140625	3	376.189101	1125.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.677	1	28.471	27.971	28.971	-0.20593								0	0	0	0.034673	1	10387	10387		61.602	34.379	1				30208	3846	18993	19098	29102	29102					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	HCT116MG_D190212_S3	3	1126.5528564453125	1	1126.55275	1125.54547	0.64103	0.00072216	-0.10896	-0.00012275	0.53207	0.00059941	1126.5523804759741	28.669	0.20813	28.463	28.333	28.541	-0.20593					5	3	2	0	0	0	0.0030111	1	10414	10414		123.45	68.677	1	3694600			30209	3846	18993	19098	29103	29103					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S4	4	563.7798461914062	2	563.780013	1125.54547	0.28216	0.00015908	0.054571	3.0766E-05	0.33673	0.00018984	563.7799938300766	28.889	0.41545	28.548	28.366	28.782	-0.34059					18	7	4	0	0	0	0.00015504	1	10390	10390		197.17	135.81	1	59957000			30210	3846	18993	19098	29104	29104					-0.012277489077177961
SEVILHHEY	9	Unmodified	_SEVILHHEY_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	HCT116MG_D190212_S4	4	376.5234375	3	376.189101	1125.54547	0.0028298	1.0645E-06	-0.052913	-1.9905E-05	-0.050083	-1.8841E-05	376.1890408968651	28.865	0.4155	28.524	28.418	28.834	-0.34059					13	7	3	0	0	0	0.071351	1	10411	10411		49.554	31.181	1	12776000			30211	3846	18993	19098	29105	29105					-0.012277489077177961
SEVISKAVT	9	Unmodified	_SEVISKAVT_					0	0	0			REV__KIF15|p.R223Lfs*7|1|0.37|ENSG00000163808|chr3:44794245-44794245|G/-|frameshift_variant	REV__KIF15|p.R223Lfs*7|1|0.37|ENSG00000163808|chr3:44794245-44794245|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	467.266357421875	2	467.266207	932.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.658	1	29.357	28.857	29.857	-0.30095								0	0	0	0.49326	1	10873	10873		29.082	0.90835	1		+		30212	12952	18994	19099	29106	29106					0.04890347832053976
SEVKPPNFPT	10	Unmodified	_SEVKPPNFPT_					0	0	0			REV__nc|ENSG00000140694|O95453-4|PARN	REV__nc|ENSG00000140694|O95453-4|PARN	MULTI-SECPEP	HCT116MG_D190212_S4	4	558.7699584960938	2	558.290214	1114.56587	0.43214	0.00024126	-0.11071	-6.1809E-05	0.32143	0.00017945	558.290380122198	36.314	0.1969	35.929	35.773	35.97	-0.38558					8	3	3	0	0	0	0.28886	1	13237	13237		19.362	7.7216	1	3004100	+		30213	12307	18995	19100	29107	29107					0.01317421752082737
SEVLKTVSA	9	Unmodified	_SEVLKTVSA_					0	0	0		ENST00000529077.5_1_11:134236970-134242406:+|nuORF;ENSG00000149328|ENST00000535456|GLB1L2	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	467.26629638671875	2	467.266207	932.517862	0.41133	0.0001922	0.014628	6.8351E-06	0.42595	0.00019903	467.2661552502567	29.52	0.26093	29.284	29.187	29.448	-0.23655					9	4	3	0	0	0	0.094138	1	10749	10749		59.368	3.8656	1	6455900			30214	4057	18996	19101	29108	29108					0.04890347832053976
SEVLKTVSA	9	Unmodified	_SEVLKTVSA_					0	0	0		ENST00000529077.5_1_11:134236970-134242406:+|nuORF;ENSG00000149328|ENST00000535456|GLB1L2	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	467.2666015625	2	467.266207	932.517862	-0.058164	-2.7178E-05	0.54356	0.00025399	0.4854	0.00022681	467.266387879372	29.668	0.20802	29.319	29.241	29.449	-0.34921					5	3	2	0	0	0	0.1935	1	10755	10755		41.956	3.78	1	2276000			30215	4057	18996	19101	29109	29109					0.04890347832053976
SEVLKTVSA	9	Unmodified	_SEVLKTVSA_					0	0	0		ENST00000529077.5_1_11:134236970-134242406:+|nuORF;ENSG00000149328|ENST00000535456|GLB1L2	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	467.266207	932.517862	0.52942	0.00024738	-0.25523	-0.00011926	0.2742	0.00012812	467.2661307622966	29.564	0.20654	29.263	29.134	29.34	-0.30095	-0.025413	-0.00027294	NaN	59.368	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9379900			30216	4057	18996	19101							0.04890347832053976
SEVMADLWWD	10	Unmodified	_SEVMADLWWD_					0	0	0		ENST00000486486.1_1_3:44772979-44773213:+|nuORF	ENST00000486486.1_1_3:44772979-44773213:+|nuORF	ENST00000486486.1_1_3:44772979-44773213:+|nuORF	MSMS	HCT116MG_D190212_S3	3	417.85107421875	3	417.849868	1250.52777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.214	1	22.215	21.715	22.715	0.00074577								0	0	0	0.94107	1	7782	7782		3.5871	0.26742	1				30217	8296	18997	19102	29110	29110					-0.08746832224892387
SEVMPLPP	8	Unmodified	_SEVMPLPP_					0	0	0		KCNT1|p.L62M|1|0.36|ENSG00000107147|chr9:135714650-135714650|C/A|missense_variant	KCNT1|p.L62M|1|0.36|ENSG00000107147|chr9:135714650-135714650|C/A|missense_variant	KCNT1|p.L62M|1|0.36|ENSG00000107147|chr9:135714650-135714650|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	435.2274475097656	2	435.225497	868.43644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.249	1	17.079	16.579	17.579	-0.17047								0	0	0	0.8837	1	5708	5708		15.768	1.8622	1				30218	9257	18998	19103	29111	29111					-0.003040511315475669
SEVNHYYEP	9	Unmodified	_SEVNHYYEP_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-SECPEP	HCT116MG_D190212_S3	3	569.26806640625	2	569.246003	1136.47745	0.60438	0.00034404	-0.52641	-0.00029966	0.077973	4.4386E-05	569.2454791056223	29.711	0.31856	29.474	29.344	29.662	-0.23655					8	5	2	0	0	0	0.22506	1	10832	10832		20.415	11.669	1	2824100			30219	1225	18999	19104	29112	29112					-0.08532618558365357
SEVNQKLNREF	11	Unmodified	_SEVNQKLNREF_					0	0	0			REV__tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	REV__tr|U7STC2|U7STC2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01297PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	682.352294921875	2	682.351865	1362.68918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.147	1	20.764	20.264	21.264	-0.38288								0	0	0	0.88801	1	7427	7427		21.537	7.1316	1		+		30220	17791	19000	19105	29113	29113					0.022340531325426127
SEVNRGDKYIA	11	Unmodified	_SEVNRGDKYIA_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;KIF5B|p.Y228Sfs*3|1|0.11|ENSG00000170759|chr10:32037283-32037284|AA/-|frameshift_variant	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	HCT116MG_D190212_S2	2	626.3201293945312	2	626.320034	1250.62551	0.61385	0.00038447	-0.73702	-0.00046161	-0.12317	-7.7142E-05	626.3194692274998	23.843	0.36474	23.46	23.195	23.56	-0.38324					13	6	4	0	0	0	0.41751	1	8526	8526		53.47	26.246	1	37227000			30221	5152	19001	19106	29114	29114					0.010226926954828741
SEVNRGDKYIA	11	Unmodified	_SEVNRGDKYIA_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;KIF5B|p.M622Wfs*8|1|0.15|ENSG00000170759|chr10:32022898-32022898|T/-|frameshift_variant;KIF5B|p.Y228Sfs*3|1|0.11|ENSG00000170759|chr10:32037283-32037284|AA/-|frameshift_variant	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MATCH	HCT116MG_D190212_S1	1		2	626.320034	1250.62551	0.63661	0.00039872	-1.588	-0.00099461	-0.9514	-0.00059588	626.8206965674576	23.231	0.26035	23.231	23.054	23.314	0	-0.11475	-0.00080838	NaN	53.47	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4665600			30222	5152	19001	19106							0.010226926954828741
SEVPTSVF	8	Unmodified	_SEVPTSVF_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000471023.1_1_20:2637149-2637577:+|nuORF;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	HCT116MG_D190212_S3	3	865.4318237304688	1	865.430175	864.422899	0.79454	0.00068762	-0.20929	-0.00018112	0.58525	0.00050649	865.429826586746	47.038	0.36485	46.724	46.542	46.907	-0.31405					11	6	2	0	0	0	0.062806	1	17652	17652		109.63	35.233	1	4776400			30223	1782	19002	19107	29115	29115					-0.01473585639121211
SEVPVHRYTDY	11	Unmodified	_SEVPVHRYTDY_					0	0	0			REV__NBAS|p.Q1496R|1|0.36|ENSG00000151779|chr2:15327845-15327845|T/C|missense_variant	REV__NBAS|p.Q1496R|1|0.36|ENSG00000151779|chr2:15327845-15327845|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	683.3251953125	2	683.325316	1364.63608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.444	1	27.102	26.602	27.602	-0.34201								0	0	0	0.93552	1	9969	9969		13.906	0.86358	1		+		30224	17062	19003	19108	29116	29116					-0.03165324650103685
SEVPVHRYTDY	11	Unmodified	_SEVPVHRYTDY_					0	0	0			REV__NBAS|p.Q1496R|1|0.36|ENSG00000151779|chr2:15327845-15327845|T/C|missense_variant	REV__NBAS|p.Q1496R|1|0.36|ENSG00000151779|chr2:15327845-15327845|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	683.3252563476562	2	683.325316	1364.63608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.304	1	27.134	26.634	27.634	-0.16933								0	0	0	0.94416	1	9834	9834		9.3831	0	1		+		30225	17062	19003	19108	29117	29117					-0.03165324650103685
SEVPVTASA	9	Unmodified	_SEVPVTASA_					0	0	0		ENST00000420416.1_3_10:14920949-14938948:+|nuORF;ENST00000313519.9_2_10:14920918-14938948:+|nuORF	ENST00000420416.1_3_10:14920949-14938948:+|nuORF	ENST00000420416.1_3_10:14920949-14938948:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	860.435791015625	1	860.435989	859.428712	0.78163	0.00067254	-0.3299	-0.00028386	0.45173	0.00038868	860.4356705884046	27.939	0.31178	27.751	27.517	27.829	-0.18847					9	5	2	0	0	0	0.0066233	1	10087	10087		123.45	41.838	1	4617600			30226	7073	19004	19109	29118	29118					-0.0066248712747665195
SEVQKGFTA	9	Unmodified	_SEVQKGFTA_					0	0	0		STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant;ENST00000498488.5_1_1:24717891-24727878:-|nuORF;STPG1|p.G51Dfs*90|1|0.32|ENSG00000001460|chr1:24391600-24391600|T/-|frameshift_variant;ENSG00000001460|ENST00000337248|STPG1	STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant	STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	483.74810791015625	2	483.748182	965.481811	0.28063	0.00013575	-0.32059	-0.00015509	-0.039967	-1.9334E-05	483.7480642758404	26.39	0.15628	26.39	26.293	26.449	0					4	2	2	0	0	0	0.032914	1	9552	9552		83.429	31.16	1	5119300			30227	785	19005	19110	29119	29119					-0.0023110934480428114
SEVQKGFTA	9	Unmodified	_SEVQKGFTA_					0	0	0		STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant;ENST00000498488.5_1_1:24717891-24727878:-|nuORF;STPG1|p.G51Dfs*90|1|0.32|ENSG00000001460|chr1:24391600-24391600|T/-|frameshift_variant;ENSG00000001460|ENST00000337248|STPG1	STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant	STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	483.7478942871094	2	483.748182	965.481811	0.1118	5.4085E-05	0.22914	0.00011085	0.34094	0.00016493	483.7482395976056	26.775	0.31306	26.422	26.293	26.606	-0.35254					8	5	2	0	0	0	0.0082095	1	9712	9712		117.76	70.012	1	39529000			30228	785	19005	19110	29120	29120					-0.0023110934480428114
SEVQKGFTA	9	Unmodified	_SEVQKGFTA_					0	0	0		STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant;ENST00000498488.5_1_1:24717891-24727878:-|nuORF;STPG1|p.G51Dfs*90|1|0.32|ENSG00000001460|chr1:24391600-24391600|T/-|frameshift_variant;ENSG00000001460|ENST00000337248|STPG1	STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant	STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	483.2618713378906	2	483.748182	965.481811	0.29441	0.00014242	0.016593	8.0269E-06	0.311	0.00015045	483.74805560523004	26.567	0.4686	26.418	26.046	26.515	-0.14924					10	8	2	0	0	0	0.012531	1	9520	9520		107.1	63.241	1	10108000			30229	785	19005	19110	29121	29121					-0.0023110934480428114
SEVQKGFTA	9	Unmodified	_SEVQKGFTA_					0	0	0		STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant;ENST00000498488.5_1_1:24717891-24727878:-|nuORF;STPG1|p.G51Dfs*90|1|0.32|ENSG00000001460|chr1:24391600-24391600|T/-|frameshift_variant;ENSG00000001460|ENST00000337248|STPG1	STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant	STPG1|p.G51Rfs*4|1|0.23|ENSG00000001460|chr1:24391599-24391600|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	483.7481384277344	2	483.748182	965.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.835	1	26.523	26.023	27.023	-0.3114								0	0	0	0.16977	1	9578	9578		49.554	17.249	1				30230	785	19005	19110	29122	29122					-0.0023110934480428114
SEVQQFHNI	9	Unmodified	_SEVQQFHNI_					0	0	0			REV__BTBD2|p.R376H|2|0.38|ENSG00000133243|chr19:1987554-1987554|C/T|missense_variant	REV__BTBD2|p.R376H|2|0.38|ENSG00000133243|chr19:1987554-1987554|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	367.8487243652344	3	367.848967	1100.52507	-0.11864	-4.364E-05	-0.39228	-0.0001443	-0.51092	-0.00018794	367.8489109305218	19.196	0.20774	19.265	19.135	19.343	0.069159					6	3	2	0	0	0	0.66792	1	6598	6598		4.5289	0.94181	1	2379000	+		30231	10060	19006	19111	29123	29123					-0.021169195675156516
SEVQSTVEA	9	Unmodified	_SEVQSTVEA_					0	0	0		ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	949.4476318359375	1	949.447282	948.440005	0.7342	0.00069708	0.21854	0.00020749	0.95274	0.00090457	949.4472027104521	25.009	0.36407	24.633	24.504	24.868	-0.37521					14	6	3	0	0	0	0.020353	1	8990	8990		96.111	33.538	1	38736000			30232	8544	19007	19112	29124	29124					-0.036277098239793304
SEVQSTVEA	9	Unmodified	_SEVQSTVEA_					0	0	0		ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	475.2274475097656	2	475.227279	948.440005	0.31906	0.00015162	0.33082	0.00015721	0.64988	0.00030884	475.22727736354597	25.009	0.46742	24.633	24.452	24.92	-0.37521					13	8	3	0	0	0	0.12205	1	9013	9013		53.833	9.9745	1	33716000			30233	8544	19007	19112	29125	29125					-0.036277098239793304
SEVQSTVEA	9	Unmodified	_SEVQSTVEA_					0	0	0		ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	949.44775390625	1	949.447282	948.440005	0.86217	0.00081859	-0.18623	-0.00017682	0.67594	0.00064177	949.4470121511947	24.846	0.52064	24.763	24.549	25.07	-0.083694					22	9	3	0	0	0	0.077982	1	8835	8835		62.573	14.824	1	19788000			30234	8544	19007	19112	29126	29126					-0.036277098239793304
SEVQSTVEA	9	Unmodified	_SEVQSTVEA_					0	0	0		ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	475.227294921875	2	475.227279	948.440005	0.28827	0.00013699	0.20003	9.506E-05	0.4883	0.00023205	475.2272642414044	24.867	0.46839	24.783	24.549	25.018	-0.083694					16	8	3	0	0	0	0.055677	1	8836	8836		71.922	18.089	1	23072000			30235	8544	19007	19112	29127	29127					-0.036277098239793304
SEVQSTVEA	9	Unmodified	_SEVQSTVEA_					0	0	0		ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	475.2274169921875	2	475.227279	948.440005	0.61595	0.00029272	0.25867	0.00012293	0.87462	0.00041564	475.22726010729514	24.985	0.468	24.708	24.489	24.957	-0.27653					17	8	3	0	0	0	0.055677	1	8822	8822		71.922	18.089	1	7778600			30236	8544	19007	19112	29128	29128					-0.036277098239793304
SEVQSTVEA	9	Unmodified	_SEVQSTVEA_					0	0	0		ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	949.447509765625	1	949.447282	948.440005	0.71631	0.0006801	-0.25986	-0.00024672	0.45645	0.00043337	949.4469575916949	25	0.31204	24.72	24.538	24.85	-0.27958					8	5	2	0	0	0	0.047849	1	8846	8846		75.761	23.492	1	8208900			30237	8544	19007	19112	29129	29129					-0.036277098239793304
SEVRVYNY	8	Unmodified	_SEVRVYNY_					0	0	0		ENST00000496531.2_1_X:40540160-40542133:-|nuORF;ENSG00000180182|ENST00000324817|MED14	ENST00000496531.2_1_X:40540160-40542133:-|nuORF	ENST00000496531.2_1_X:40540160-40542133:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7545776367188	2	515.253631	1028.49271	0.39604	0.00020406	-0.41731	-0.00021502	-0.021271	-1.096E-05	515.2535525415258	31.911	0.25766	31.671	31.519	31.776	-0.24016					8	4	3	0	0	0	0.17427	1	11802	11802		78.728	38.771	1	17654000			30238	5587	19008	19113	29130	29130					-0.020397069705268223
SEVRVYNY	8	Unmodified	_SEVRVYNY_					0	0	0		ENST00000496531.2_1_X:40540160-40542133:-|nuORF;ENSG00000180182|ENST00000324817|MED14	ENST00000496531.2_1_X:40540160-40542133:-|nuORF	ENST00000496531.2_1_X:40540160-40542133:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.253662109375	2	515.253631	1028.49271	0.11239	5.7911E-05	0.14944	7.6998E-05	0.26183	0.00013491	515.2535940122709	32.018	0.25984	31.739	31.578	31.838	-0.27841					7	4	2	0	0	0	0.22303	1	11737	11737		69.105	36.799	1	7514000			30239	5587	19008	19113	29131	29131					-0.020397069705268223
SEVRVYNY	8	Unmodified	_SEVRVYNY_					0	0	0		ENST00000496531.2_1_X:40540160-40542133:-|nuORF;ENSG00000180182|ENST00000324817|MED14	ENST00000496531.2_1_X:40540160-40542133:-|nuORF	ENST00000496531.2_1_X:40540160-40542133:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	515.253631	1028.49271	0.44217	0.00022783	0.005984	3.0833E-06	0.44815	0.00023091	515.2537635723958	31.69	0.20851	31.69	31.544	31.753	0	-0.00989	1.7993E-05	NaN	78.728	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3506100			30240	5587	19008	19113							-0.020397069705268223
SEVSWKII	8	Unmodified	_SEVSWKII_					0	0	0			REV__ENSG00000114767|ENST00000232888|RRP9	REV__ENSG00000114767|ENST00000232888|RRP9	MSMS	HCT116MG_D190212_S4	4	481.2725524902344	2	481.271293	960.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.219	1	35.833	35.333	36.333	-0.38558								0	0	0	0.8837	1	13246	13246		5.2307	0	1		+		30241	11517	19009	19114	29132	29132					0.046189555572937024
SEVTSTVY	8	Unmodified	_SEVTSTVY_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	HCT116MG_D190212_S1	1	885.4205932617188	1	885.420004	884.412728	0.84568	0.00074878	0.52402	0.00046398	1.3697	0.0012128	885.4202798763816	31.222	0.2604	31.222	31.076	31.336	0					7	4	2	0	0	0	0.1757	1	11498	11498		78.445	18.65	1	5672300			30242	3715	19010	19115	29133	29133					-0.03410193364368297
SEVTSTVY	8	Unmodified	_SEVTSTVY_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	HCT116MG_D190212_S2	2	885.4210205078125	1	885.420004	884.412728	1.0484	0.00092825	-0.0099284	-8.7908E-06	1.0384	0.00091946	885.4198963691827	31.473	0.51809	31.225	31.043	31.561	-0.24883					13	9	2	0	0	0	0.1757	1	11599	11599		78.445	18.65	1	72023000			30243	3715	19010	19115	29134	29134					-0.03410193364368297
SEVTSTVY	8	Unmodified	_SEVTSTVY_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	HCT116MG_D190212_S3	3	885.4208374023438	1	885.420004	884.412728	0.73513	0.0006509	0.024234	2.1458E-05	0.75936	0.00067235	885.4199920216245	31.57	0.41729	31.299	31.117	31.534	-0.27028					16	7	3	0	0	0	0.1757	1	11541	11541		78.445	18.65	1	35166000			30244	3715	19010	19115	29135	29135					-0.03410193364368297
SEVTSTVY	8	Unmodified	_SEVTSTVY_					0	0	0		ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	HCT116MG_D190212_S4	4	885.4192504882812	1	885.420004	884.412728	0.7028	0.00062227	0.2306	0.00020418	0.9334	0.00082645	885.4200741787718	31.68	0.3117	31.309	31.127	31.439	-0.37026					9	5	2	0	0	0	0.1757	1	11497	11497		78.445	18.65	1	11087000			30245	3715	19010	19115	29136	29136					-0.03410193364368297
SEVVVALI	8	Unmodified	_SEVVVALI_					0	0	0		ENSG00000259224|ENST00000412468|SLC35G6;ENSG00000177710|ENST00000382435|SLC35G5;ENSG00000164729|ENST00000297307|SLC35G3	ENSG00000259224|ENST00000412468|SLC35G6	ENSG00000259224|ENST00000412468|SLC35G6	MSMS	HCT116MG_D190212_S4	4	415.2536315917969	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.976	1	56.675	56.175	57.175	-0.3004								0	0	0	0.8837	1	21373	21373		2.5775	0	1				30246	4718	19011	19116	29137	29137					0.07456168154294573
SEVVVGSV	8	Unmodified	_SEVVVGSV_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	HCT116MG_D190212_S1	1	388.2538146972656	2	388.213443	774.412334	-0.20756	-8.0579E-05	0.33972	0.00013188	0.13216	5.1306E-05	388.21355510908796	29.867	0.20821	29.867	29.737	29.945	0					6	3	2	0	0	0	0.33021	1	10919	10919		0.69038	0	1	10985000	+		30247	10581	19012	19117	29138	29138					0.01610431706444615
SEWDGIVTV	9	Unmodified	_SEWDGIVTV_					0	0	0		nc|ENSG00000063176|Q9NRA0-5|SPHK2;SPHK2|p.V492*|1|0.22|ENSG00000063176|chr19:48629277-48629277|C/-|frameshift_variant;nc|ENSG00000063176|Q9NRA0-4|SPHK2;nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	MULTI-MSMS	HCT116MG_D190212_S2	2	1005.4883422851562	1	1005.48875	1004.48148	0.46737	0.00046994	0.37276	0.0003748	0.84013	0.00084474	1005.4889390193547	53.748	0.3618	53.558	53.325	53.687	-0.1894					15	6	3	0	0	0	0.013464	1	20667	20667		104.8	37.455	1	99532000			30248	9374	19013	19118	29139	29139					-0.020585290646636167
SEWDGIVTV	9	Unmodified	_SEWDGIVTV_					0	0	0		nc|ENSG00000063176|Q9NRA0-5|SPHK2;SPHK2|p.V492*|1|0.22|ENSG00000063176|chr19:48629277-48629277|C/-|frameshift_variant;nc|ENSG00000063176|Q9NRA0-4|SPHK2;nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	MULTI-MSMS	HCT116MG_D190212_S3	3	1005.48876953125	1	1005.48875	1004.48148	0.5845	0.0005877	0.28394	0.0002855	0.86844	0.00087321	1005.4886477606744	53.934	0.25971	53.635	53.509	53.769	-0.29946					10	4	3	0	0	0	0.023611	1	20435	20435		92.822	35.351	1	7911200			30249	9374	19013	19118	29140	29140					-0.020585290646636167
SEWDGIVTV	9	Unmodified	_SEWDGIVTV_					0	0	0		nc|ENSG00000063176|Q9NRA0-5|SPHK2;SPHK2|p.V492*|1|0.22|ENSG00000063176|chr19:48629277-48629277|C/-|frameshift_variant;nc|ENSG00000063176|Q9NRA0-4|SPHK2;nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1005.48875	1004.48148	0.9009	0.00090584	1.3546	0.001362	2.2555	0.0022678	1005.4885678717936	53.452	0.4118	53.452	53.102	53.514	0	-0.096449	0.0010043	NaN	104.8	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12414000			30250	9374	19013	19118							-0.020585290646636167
SEWELPKY	8	Unmodified	_SEWELPKY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	526.2589721679688	2	526.258382	1050.50221	0.43512	0.00022899	0.055863	2.9398E-05	0.49099	0.00025839	526.2583258927481	46.721	0.36298	46.721	46.492	46.855	0					13	6	3	0	0	0	0.057078	1	17738	17738		115.69	73.597	1	16338000			30251	4764	19014	19119	29141	29141					-0.021019386850184674
SEWELPKY	8	Unmodified	_SEWELPKY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7841186523438	2	526.258382	1050.50221	0.87292	0.00045938	-0.23313	-0.00012269	0.63979	0.0003367	526.2581230297395	46.758	0.51335	46.647	46.369	46.882	-0.11121					21	9	4	0	0	0	0.049954	3	17838	17774;17798;17838		123.45	81.356	1	97417000			30252	4764	19014	19119	29142;29143;29144	29144					-0.021019386850184674
SEWELPKY	8	Unmodified	_SEWELPKY_					0	0	0		nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	nc|ENSG00000165322|Q8IWW6-2|ARHGAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	526.25830078125	2	526.258382	1050.50221	0.4386	0.00023082	0.47378	0.00024933	0.91238	0.00048015	526.2584718977472	46.952	0.36499	46.638	46.437	46.802	-0.31405					12	6	3	0	0	0	0.094591	1	17622	17622		96.285	54.19	1	6075200			30253	4764	19014	19119	29145	29145					-0.021019386850184674
SEYEGILDA	9	Unmodified	_SEYEGILDA_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;nc|ENSG00000084112|Q8WYL5-4|SSH1;SSH1|p.L973Tfs*23|1|0.28|ENSG00000084112|chr12:108788222-108788223|-/G|frameshift_variant;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	MULTI-MSMS	HCT116MG_D190212_S2	2	996.4520263671875	1	996.452033	995.444756	0.55352	0.00055156	-0.039957	-3.9815E-05	0.51357	0.00051174	996.4516563138455	46.299	0.25862	46.188	46.059	46.317	-0.11121					6	4	2	0	0	0	0.010304	1	17657	17657		112.59	48.357	1	22860000			30254	1443	19015	19120	29146	29146					-0.05314825681239199
SEYEGILDA	9	Unmodified	_SEYEGILDA_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;nc|ENSG00000084112|Q8WYL5-4|SSH1;SSH1|p.L973Tfs*23|1|0.28|ENSG00000084112|chr12:108788222-108788223|-/G|frameshift_variant;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	MULTI-MSMS	HCT116MG_D190212_S3	3	996.4515991210938	1	996.452033	995.444756	0.74486	0.00074222	0.10247	0.00010211	0.84734	0.00084433	996.4519835072266	46.517	0.36074	46.205	46.026	46.387	-0.31237					10	6	2	0	0	0	0.010304	1	17456	17456		112.59	51.236	1	9054500			30255	1443	19015	19120	29147	29147					-0.05314825681239199
SEYEMSIAA	9	Unmodified	_SEYEMSIAA_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	HCT116MG_D190212_S3	3	1000.4300537109375	1	1000.42919	999.421912	0.33477	0.00033491	0.68063	0.00068093	1.0154	0.0010158	1000.4298486183184	41.59	0.059448	41.288	41.244	41.303	-0.30257					5	3	2	0	0	0	0.088989	1	15473	15473		60.39	31.903	1	6385600			30256	3535	19016	19121	29148	29148					-0.07782168070366424
SEYGKAAVA	9	Unmodified	_SEYGKAAVA_					0	0	0		ENST00000580746.1_1_18:10526126-10532820:+|nuORF;NAPG|p.N182Kfs*4|1|0.28|ENSG00000134265|chr18:10546357-10546358|-/A|frameshift_variant;ENST00000582978.5_1_18:10526099-10540502:+|nuORF;ENSG00000134265|ENST00000322897|NAPG	ENST00000580746.1_1_18:10526126-10532820:+|nuORF	ENST00000580746.1_1_18:10526126-10532820:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	448.2296447753906	2	448.229625	894.444697	-0.055948	-2.5078E-05	-0.24222	-0.00010857	-0.29817	-0.00013365	448.2293402722272	20.81	0.26017	20.845	20.714	20.975	0.034473					6	4	2	0	0	0	0.31596	1	7229	7229		29.082	0	1	2487900			30257	3273	19017	19122	29149	29149					-0.0067478089058568
SEYGKAAVA	9	Unmodified	_SEYGKAAVA_					0	0	0		ENST00000580746.1_1_18:10526126-10532820:+|nuORF;NAPG|p.N182Kfs*4|1|0.28|ENSG00000134265|chr18:10546357-10546358|-/A|frameshift_variant;ENST00000582978.5_1_18:10526099-10540502:+|nuORF;ENSG00000134265|ENST00000322897|NAPG	ENST00000580746.1_1_18:10526126-10532820:+|nuORF	ENST00000580746.1_1_18:10526126-10532820:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	448.229625	894.444697	0.075432	3.3811E-05	-0.10066	-4.512E-05	-0.025231	-1.1309E-05	448.22957423176354	21.422	0.25865	21.039	20.859	21.117	-0.38288	0.097334	5.695E-05	NaN	29.082	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3335600			30258	3273	19017	19122							-0.0067478089058568
SEYGSIIAF	9	Unmodified	_SEYGSIIAF_					0	0	0		NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;NUP214|p.F123Lfs*23|1|0.39|ENSG00000126883|chr9:131128453-131128453|T/-|frameshift_variant	NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant	NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	986.4839477539062	1	986.482939	985.475663	0.91067	0.00089836	0.26882	0.00026519	1.1795	0.0011636	986.4828866932506	56.206	0.20609	56.024	55.898	56.104	-0.18261					7	3	3	0	0	0	0.19218	1	21708	21708		42.095	23.96	1	17648000			30259	2952	19018	19123	29150	29150					-0.017656275763442864
SEYGSIIAF	9	Unmodified	_SEYGSIIAF_					0	0	0		NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;NUP214|p.F123Lfs*23|1|0.39|ENSG00000126883|chr9:131128453-131128453|T/-|frameshift_variant	NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant	NUP214|p.P1285Rfs*3|1|0.28|ENSG00000126883|chr9:131197346-131197359|CCCAGGAGAACCTG/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		1	986.482939	985.475663	0.8991	0.00088694	-0.40069	-0.00039527	0.49841	0.00049167	986.4822916509953	56.302	0.15708	56.019	55.94	56.097	-0.28367	-0.0025459	-0.0002949	NaN	42.095	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1085500			30260	2952	19018	19123							-0.017656275763442864
SEYIHAQVA	9	Unmodified	_SEYIHAQVA_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000471066.1_1_7:33042511-33044960:+|nuORF;nc|ENSG00000291029|Q75LS8|FKBP9P1;ENST00000475220.1_1_7:33038205-33044960:+|nuORF;ENST00000455909.5_1_7:55750344-55756724:-|nuORF;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	HCT116MG_D190212_S1	1	509.2534484863281	2	509.253631	1016.49271	0.5794	0.00029506	-0.22703	-0.00011562	0.35237	0.00017945	509.2533873045754	29.138	0.20902	29.138	29.007	29.216	0					5	3	2	0	0	0	0.066823	1	10663	10663		66.457	37.375	1	9707400			30261	2774	19019	19124	29151	29151					-0.014877069705335089
SEYIHAQVA	9	Unmodified	_SEYIHAQVA_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000471066.1_1_7:33042511-33044960:+|nuORF;nc|ENSG00000291029|Q75LS8|FKBP9P1;ENST00000475220.1_1_7:33038205-33044960:+|nuORF;ENST00000455909.5_1_7:55750344-55756724:-|nuORF;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2543029785156	2	509.253631	1016.49271	0.65003	0.00033103	-0.10948	-5.5753E-05	0.54055	0.00027528	509.25370267461153	29.512	0.36154	29.211	29.082	29.444	-0.30095					10	6	3	0	0	0	0.041798	1	10837	10837		78.728	48.092	1	29357000			30262	2774	19019	19124	29152	29152					-0.014877069705335089
SEYIHAQVA	9	Unmodified	_SEYIHAQVA_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000471066.1_1_7:33042511-33044960:+|nuORF;nc|ENSG00000291029|Q75LS8|FKBP9P1;ENST00000475220.1_1_7:33038205-33044960:+|nuORF;ENST00000455909.5_1_7:55750344-55756724:-|nuORF;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	HCT116MG_D190212_S3	3	509.25360107421875	2	509.253631	1016.49271	0.33967	0.00017298	-0.26978	-0.00013738	0.069889	3.5591E-05	509.2534223558495	29.558	0.36504	29.321	29.135	29.5	-0.23655					11	6	3	0	0	0	0.12205	1	10763	10763		53.833	28.433	1	11466000			30263	2774	19019	19124	29153	29153					-0.014877069705335089
SEYKVRIFEN	10	Unmodified	_SEYKVRIFEN_					0	0	0		PCDHA8|p.E248K|1|0.09|ENSG00000204962|chr5:140842063-140842063|G/A|missense_variant	PCDHA8|p.E248K|1|0.09|ENSG00000204962|chr5:140842063-140842063|G/A|missense_variant	PCDHA8|p.E248K|1|0.09|ENSG00000204962|chr5:140842063-140842063|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	428.7465515136719	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6862	1	9.4311	8.9311	9.9311	-0.25508								0	0	0	0.96804	1	3034	3034		0.69767	0	1				30264	9733	19020	19125	29154	29154					0.02052167217925671
SEYLGVTSF	9	Unmodified	_SEYLGVTSF_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10;ENST00000464779.1_1_6:170117898-170118989:-|nuORF;PHF10|p.A207Qfs*8|1|0.18|ENSG00000130024|chr6:169715783-169715783|T/-|frameshift_variant	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-MSMS	HCT116MG_D190212_S2	2	1002.4793090820312	1	1002.47785	1001.47058	0.78035	0.00078228	0.55321	0.00055458	1.3336	0.0013369	1002.4783497046938	52.115	0.25797	51.93	51.782	52.04	-0.18496					10	4	3	0	0	0	0.010304	1	20006	20006		112.59	52.204	1	29057000			30265	3052	19021	19126	29155	29155					-0.030099314389531173
SEYMNNKEA	9	Unmodified	_SEYMNNKEA_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515592.1_1_5:140041093-140041799:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	HCT116MG_D190212_S1	1	543.2324829101562	2	543.232039	1084.44952	0.51848	0.00028165	0.024411	1.3261E-05	0.54289	0.00029491	543.2320702575958	19.992	0.26139	19.992	19.913	20.175	0					5	4	2	0	0	0	0.17622	1	6985	6985		43.772	7.6454	1	3681900			30266	2369	19022	19127	29156	29156					-0.08932264810118795
SEYMNNKEA	9	Unmodified	_SEYMNNKEA_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515592.1_1_5:140041093-140041799:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	HCT116MG_D190212_S2	2	543.2322387695312	2	543.232039	1084.44952	0.46491	0.00025256	-0.0037041	-2.0122E-06	0.46121	0.00025054	543.2319538908791	20.483	0.31954	20.103	19.969	20.289	-0.37949					16	5	4	0	0	0	0.00446	1	7183	7183		143.91	87.732	1	39459000			30267	2369	19022	19127	29157	29157					-0.08932264810118795
SEYMNNKEA	9	Unmodified	_SEYMNNKEA_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515592.1_1_5:140041093-140041799:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	HCT116MG_D190212_S3	3	543.2325439453125	2	543.232039	1084.44952	0.42488	0.00023081	0.12865	6.9885E-05	0.55353	0.00030069	543.2320811472307	19.768	0.36464	19.828	19.698	20.063	0.05983					15	6	3	0	0	0	0.0063854	1	6804	6804		125.53	69.352	1	15296000			30268	2369	19022	19127	29158	29158					-0.08932264810118795
SEYMNNKEA	9	Unmodified	_SEYMNNKEA_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515592.1_1_5:140041093-140041799:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MSMS	HCT116MG_D190212_S4	4	543.2321166992188	2	543.232039	1084.44952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.188	1	19.986	19.486	20.486	-0.20133								0	0	0	0.34992	1	6895	6895		36.506	11.832	1				30269	2369	19022	19127	29159	29159					-0.08932264810118795
SEYMNNKEA	9	Unmodified	_SEYMNNKEA_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515592.1_1_5:140041093-140041799:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	543.232039	1084.44952	0.51848	0.00028165	0.024411	1.3261E-05	0.54289	0.00029491	543.2320702575958	19.992	0.26139	19.992	19.913	20.175	0	0.017417	-4.4402E-05	NaN	143.91	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3681900			30270	2369	19022	19127							-0.08932264810118795
SEYNNFKSM	9	Unmodified	_SEYNNFKSM_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MSMS	HCT116MG_D190212_S2	2	560.24169921875	2	560.242406	1118.47026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.231	1	33.036	32.536	33.536	-0.19528								0	0	0	0.76592	1	12323	12323		15.248	5.1746	1				30271	5627	19023	19128	29160	29160					-0.08423674430446226
SEYQWITSP	9	Unmodified	_SEYQWITSP_					0	0	0		ENST00000536374.1_1_9:80851502-80863830:+|nuORF;CEP78|p.T334Lfs*9|1|0.28|ENSG00000148019|chr9:78248801-78248801|A/-|frameshift_variant;nc|ENSG00000148019|Q5JTW2|CEP78;ENSG00000148019|ENST00000643273|CEP78;nc|ENSG00000148019|Q5JTW2-5|CEP78;nc|ENSG00000148019|Q5JTW2-2|CEP78	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1110.5125732421875	1	1110.51022	1109.50294	0.4297	0.00047719	0.73784	0.00081938	1.1675	0.0012966	1110.5112401812773	49.316	0.25323	49.162	49.086	49.339	-0.15405					5	4	2	0	0	0	0.0077497	1	18905	18905		118.89	56.322	1	29393000			30272	413	19024	19129	29161	29161					-0.04743144035955993
SEYQWITSP	9	Unmodified	_SEYQWITSP_					0	0	0		ENST00000536374.1_1_9:80851502-80863830:+|nuORF;CEP78|p.T334Lfs*9|1|0.28|ENSG00000148019|chr9:78248801-78248801|A/-|frameshift_variant;nc|ENSG00000148019|Q5JTW2|CEP78;ENSG00000148019|ENST00000643273|CEP78;nc|ENSG00000148019|Q5JTW2-5|CEP78;nc|ENSG00000148019|Q5JTW2-2|CEP78	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	555.7778930664062	2	555.758746	1109.50294	0.18259	0.00010148	1.1879	0.00066017	1.3705	0.00076165	555.7587422654632	49.331	0.40489	49.177	48.985	49.39	-0.15405					13	7	3	0	0	0	0.26536	1	18928	18928		34.402	16.255	1	64956000			30273	413	19024	19129	29162	29162					-0.04743144035955993
SEYQWITSP	9	Unmodified	_SEYQWITSP_					0	0	0		ENST00000536374.1_1_9:80851502-80863830:+|nuORF;CEP78|p.T334Lfs*9|1|0.28|ENSG00000148019|chr9:78248801-78248801|A/-|frameshift_variant;nc|ENSG00000148019|Q5JTW2|CEP78;ENSG00000148019|ENST00000643273|CEP78;nc|ENSG00000148019|Q5JTW2-5|CEP78;nc|ENSG00000148019|Q5JTW2-2|CEP78	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	555.7577514648438	2	555.758746	1109.50294	0.28883	0.00016052	0.14691	8.1645E-05	0.43574	0.00024217	555.7587087681555	49.526	0.52264	49.21	48.922	49.445	-0.31596					15	9	2	0	0	0	0.023778	1	18615	18615		92.653	41.024	1	21739000			30274	413	19024	19129	29163	29163					-0.04743144035955993
SEYQWITSP	9	Unmodified	_SEYQWITSP_					0	0	0		ENST00000536374.1_1_9:80851502-80863830:+|nuORF;CEP78|p.T334Lfs*9|1|0.28|ENSG00000148019|chr9:78248801-78248801|A/-|frameshift_variant;nc|ENSG00000148019|Q5JTW2|CEP78;ENSG00000148019|ENST00000643273|CEP78;nc|ENSG00000148019|Q5JTW2-5|CEP78;nc|ENSG00000148019|Q5JTW2-2|CEP78	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	ENST00000536374.1_1_9:80851502-80863830:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	555.758746	1109.50294	0.4021	0.00022347	0.76845	0.00042707	1.1705	0.00065054	555.75876652733	49.157	0.2595	49.157	49.027	49.286	0	-0.030731	0.00069675	NaN	92.653	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7640100			30275	413	19024	19129							-0.04743144035955993
SEYRWHINF	9	Unmodified	_SEYRWHINF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	HCT116MG_D190212_S1	1	417.8683166503906	3	417.868362	1250.58326	-0.18363	-7.6732E-05	0.25928	0.00010834	0.075652	3.1613E-05	417.8684017294792	48.537	0.20609	48.537	48.408	48.614	0					9	3	3	0	0	0	0.26536	1	18499	18499		38.615	27.12	1	30103000			30276	1629	19025	19130	29164	29164					-0.03201237922235123
SEYRWHINF	9	Unmodified	_SEYRWHINF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	HCT116MG_D190212_S1	1	626.2988891601562	2	626.298904	1250.58326	0.52546	0.0003291	0.40308	0.00025245	0.92854	0.00058155	626.2988983651509	48.537	0.25753	48.537	48.408	48.666	0					10	4	3	0	0	0	0.011132	1	18500	18500		110.55	55.05	1	24408000			30277	1629	19025	19130	29165	29165					-0.03201237922235123
SEYRWHINF	9	Unmodified	_SEYRWHINF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	HCT116MG_D190212_S2	2	626.29931640625	2	626.298904	1250.58326	0.64735	0.00040543	-0.5131	-0.00032135	0.13425	8.4079E-05	626.2987440932131	48.658	0.30476	48.515	48.388	48.693	-0.1437					10	5	3	0	0	0	0.0059958	1	18601	18601		128.93	68.859	1	231540000			30278	1629	19025	19130	29166	29166					-0.03201237922235123
SEYRWHINF	9	Unmodified	_SEYRWHINF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	HCT116MG_D190212_S2	2	417.8684997558594	3	417.868362	1250.58326	0.13353	5.58E-05	-0.018578	-7.763E-06	0.11496	4.8037E-05	417.86824890846214	48.658	0.25312	48.515	48.338	48.591	-0.1437					10	4	3	0	0	0	0.034046	1	18602	18602		75.571	43.533	1	128730000			30279	1629	19025	19130	29167	29167					-0.03201237922235123
SEYRWHINF	9	Unmodified	_SEYRWHINF_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MSMS	HCT116MG_D190212_S3	3	626.2993774414062	2	626.298904	1250.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.926	1	48.61	48.11	49.11	-0.31596								0	0	0	0.37224	1	18413	18413		34.932	13.395	1				30280	1629	19025	19130	29168	29168					-0.03201237922235123
SEYSGFVNP	9	Unmodified	_SEYSGFVNP_					0	0	0		nc|ENSG00000138660|Q63HQ0-2|AP1AR;ENSG00000138660|ENST00000274000|AP1AR	nc|ENSG00000138660|Q63HQ0-2|AP1AR	nc|ENSG00000138660|Q63HQ0-2|AP1AR	MULTI-MSMS	HCT116MG_D190212_S3	3	999.4423828125	1	999.441802	998.434526	0.75252	0.0007521	-0.39629	-0.00039607	0.35622	0.00035603	999.4410068231509	40.874	0.46904	40.572	40.267	40.736	-0.3017					11	8	2	0	0	0	0.031005	1	15196	15196		85.357	53.24	1	4384200			30281	3575	19026	19131	29169	29169					-0.06475388615797328
SEYSGFVNP	9	Unmodified	_SEYSGFVNP_					0	0	0		nc|ENSG00000138660|Q63HQ0-2|AP1AR;ENSG00000138660|ENST00000274000|AP1AR	nc|ENSG00000138660|Q63HQ0-2|AP1AR	nc|ENSG00000138660|Q63HQ0-2|AP1AR	MSMS	HCT116MG_D190212_S3	3	500.2248229980469	2	500.224539	998.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.932	1	40.63	40.13	41.13	-0.30185								0	0	0	0.50556	1	15211	15211		28.487	11.545	1				30282	3575	19026	19131	29170	29170					-0.06475388615797328
SEYSHGQSP	9	Unmodified	_SEYSHGQSP_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;nc|ENSG00000120071|Q7Z3B3-4|KANSL1;ENST00000576870.5_2_17:44108844-44117263:-|nuORF;nc|ENSG00000120071|Q7Z3B3-2|KANSL1;ENST00000572218.5_2_17:44108844-44117263:-|nuORF;ENST00000574963.1_1_17:44109343-44109685:-|nuORF	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MSMS	HCT116MG_D190212_S1	1	496.25140380859375	2	496.209421	990.404288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.525	1	16.525	16.025	17.025	0								0	0	0	0.62451	1	5567	5567		22.736	0	1				30283	2683	19027	19132	29171	29171					-0.09129747280985612
SEYTSGHSVA	10	Unmodified	_SEYTSGHSVA_					0	0	0		ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant;ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant;nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711	ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2306518554688	2	519.230353	1036.44615	0.26671	0.00013848	0.29846	0.00015497	0.56517	0.00029345	519.2303136311306	20.483	0.31954	20.103	19.969	20.289	-0.37949					8	5	2	0	0	0	0.33066	1	7194	7194		47.749	28.492	1	10573000			30284	3977	19028	19133	29172	29172					-0.07061191592470095
SEYWGRQP	8	Unmodified	_SEYWGRQP_					0	0	0		ENST00000511232.5_1_5:140047750-140048038:+|nuORF	ENST00000511232.5_1_5:140047750-140048038:+|nuORF	ENST00000511232.5_1_5:140047750-140048038:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	510.97552490234375	2	511.738148	1021.46174	0.25993	0.00013302	-0.77533	-0.00039677	-0.51539	-0.00026375	511.7378042266223	16.572	0.2602	16.23	16.1	16.36	-0.34183					6	4	2	0	0	0	0.31507	1	5560	5560		9.3474	5.0182	1	10203000			30285	8501	19029	19134	29173	29173					-0.04812860284755516
SEYWRERIWLQ	11	Unmodified	_SEYWRERIWLQ_					0	0	0		ENST00000440938.1_1_2:174350896-174350983:-|nuORF	ENST00000440938.1_1_2:174350896-174350983:-|nuORF	ENST00000440938.1_1_2:174350896-174350983:-|nuORF	MSMS	HCT116MG_D190212_S2	2	782.9076538085938	2	783.396607	1564.77866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.65	1	37.547	37.047	38.047	-0.10318								0	0	0	0.95636	1	14120	14120		2.9952	0.90923	1				30286	7925	19030	19135	29174	29174					0.01886307811946608
SFAWVPPP	8	Unmodified	_SFAWVPPP_					0	0	0			REV__ENST00000548198.5_1_12:57999629-57999917:+|nuORF	REV__ENST00000548198.5_1_12:57999629-57999917:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	450.73431396484375	2	450.734346	899.454139	0.36237	0.00016333	0.21668	9.7664E-05	0.57905	0.000261	450.73426048602255	44.784	0.31148	44.7	44.535	44.846	-0.084797					8	5	2	0	0	0	0.73076	1	17041	17041		19.439	1.304	1	22217000	+		30287	16414	19031	19136	29175	29175					0.00039032185611631576
SFCQRCLPAPQ	11	Unmodified	_SFCQRCLPAPQ_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	HCT116MG_D190212_S3	3	625.294189453125	2	625.29445	1248.57435	0.38329	0.00023967	-0.27402	-0.00017134	0.10927	6.8328E-05	625.2946336588815	22.582	1.8115	22.563	21.657	23.469	-0.018869					66	34	4	0	0	0	0.60456	1	7892	7892		34.932	1.4872	1	30973000			30288	2782	19032	19137	29176	29176					-0.03999670874577532
SFCQRCLPAPQ	11	Unmodified	_SFCQRCLPAPQ_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	HCT116MG_D190212_S4	4	625.2942504882812	2	625.29445	1248.57435	0.25008	0.00015637	-0.042911	-2.6832E-05	0.20716	0.00012954	625.2947278018305	22.724	2.1355	22.486	21.406	23.542	-0.23758					82	40	5	0	0	0	0.69464	1	8127	8127		23.79	1.1317	1	28138000			30289	2782	19032	19137	29177	29177					-0.03999670874577532
SFDHRKRERQP	11	Unmodified	_SFDHRKRERQP_					0	0	0			REV__CNNM1|p.G751Afs*29|1|0.49|ENSG00000119946|chr10:99377126-99377126|G/-|frameshift_variant	REV__CNNM1|p.G751Afs*29|1|0.49|ENSG00000119946|chr10:99377126-99377126|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	485.9231262207031	3	485.923641	1454.74909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.949	1	16.949	16.449	17.449	0								0	0	0	0.95954	1	5738	5738		1.3296	0	1		+		30290	10214	19033	19138	29178	29178					0.03990788586452254
SFDRFASVVY	10	Unmodified	_SFDRFASVVY_					0	0	0		OR5AN1|p.F278V|1|0.29|ENSG00000176495|chr11:59365290-59365290|T/G|missense_variant	OR5AN1|p.F278V|1|0.29|ENSG00000176495|chr11:59365290-59365290|T/G|missense_variant	OR5AN1|p.F278V|1|0.29|ENSG00000176495|chr11:59365290-59365290|T/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1190.5848388671875	1	1190.58405	1189.57677	0.59821	0.00071222	-0.28044	-0.00033388	0.31777	0.00037834	1190.5840051768735	46.454	0.30906	46.343	46.162	46.471	-0.11121					11	5	3	0	0	0	0.28726	1	17710	17710		51.63	7.7715	1	41213000			30291	9720	19034	19139	29179	29179					-0.010431758736103802
SFELAEPI	8	Unmodified	_SFELAEPI_					0	0	0			REV__AGAP5|p.M72I|1|0.17|ENSG00000172650|chr10:73697540-73697540|C/T|missense_variant	REV__AGAP5|p.M72I|1|0.17|ENSG00000172650|chr10:73697540-73697540|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	905.05078125	1	905.461475	904.454199	0.8266	0.00074846	0.1602	0.00014506	0.98681	0.00089352	905.4613042366137	56.669	0.2615	56.385	56.202	56.464	-0.28367					5	4	2	0	0	0	0.50777	1	21527	21527		40.449	2.2974	1	718800	+		30292	9882	19035	19140	29180	29180					-0.0018501260504990569
SFELHSSPGQ	10	Unmodified	_SFELHSSPGQ_					0	0	0		ENST00000415336.1_1_1:55352709-55353471:+|nuORF	ENST00000415336.1_1_1:55352709-55353471:+|nuORF	ENST00000415336.1_1_1:55352709-55353471:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	544.7540283203125	2	544.753995	1087.49344	0.59491	0.00032408	-0.25201	-0.00013728	0.3429	0.0001868	544.753885208698	29.794	0.99919	29.558	28.927	29.926	-0.23655					42	18	3	0	0	0	0.67188	1	10750	10750		22.736	1.1993	1	12645000			30293	7751	19036	19141	29181	29181					-0.04680912321487085
SFFYTYVI	8	Unmodified	_SFFYTYVI_					0	0	0			REV__ENST00000569053.5_1_18:66357168-66367709:-|nuORF	REV__ENST00000569053.5_1_18:66357168-66367709:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	520.2880859375	2	520.260394	1038.50623	0.22043	0.00011468	-1.0066	-0.00052371	-0.7862	-0.00040903	520.2600355159698	38.74	0.26208	38.656	38.492	38.754	-0.084618					7	4	2	0	0	0	0.28869	1	14536	14536		7.9102	0	1	8584700	+		30294	13110	19037	19142	29182	29182					-0.011478491912839672
SFGAGQRAY	9	Unmodified	_SFGAGQRAY_					0	0	0			REV__nc|ENSG00000118257|O60462-6|NRP2	REV__nc|ENSG00000118257|O60462-6|NRP2	MULTI-MSMS	HCT116MG_D190212_S2	2	478.732421875	2	478.732866	955.451179	0.30696	0.00014695	-0.6114	-0.0002927	-0.30444	-0.00014574	478.73246192621684	52.612	0.36184	52.425	52.244	52.606	-0.18725					14	6	3	0	0	0	0.19218	1	20222	20222		42.095	1.646	1	30852000	+		30295	11632	19038	19143	29183	29183					-0.02832842939199054
SFGASVSA	8	Unmodified	_SFGASVSA_					0	0	0			REV__ENST00000592939.1_1_17:76105130-76105382:-|nuORF	REV__ENST00000592939.1_1_17:76105130-76105382:-|nuORF	MSMS	HCT116MG_D190212_S1	1	363.1776123046875	2	363.176861	724.339169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.667	1	39.667	39.167	40.167	0								0	0	0	0.8837	1	14887	14887		2.5775	0	1		+		30296	16677	19039	19144	29184	29184					-0.034026970161789905
SFGASVSA	8	Unmodified	_SFGASVSA_					0	0	0			REV__ENST00000592939.1_1_17:76105130-76105382:-|nuORF	REV__ENST00000592939.1_1_17:76105130-76105382:-|nuORF	MSMS	HCT116MG_D190212_S4	4	363.17779541015625	2	363.176861	724.339169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.998	1	39.619	39.119	40.119	-0.37936								0	0	0	0.8837	1	14660	14660		2.5775	0	1		+		30297	16677	19039	19144	29185	29185					-0.034026970161789905
SFGASVSA	8	Unmodified	_SFGASVSA_					0	0	0			REV__ENST00000592939.1_1_17:76105130-76105382:-|nuORF	REV__ENST00000592939.1_1_17:76105130-76105382:-|nuORF	MSMS	HCT116MG_D190212_S4	4	363.17791748046875	2	363.176861	724.339169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.735	1	40.357	39.857	40.857	-0.37828								0	0	0	0.8837	1	14956	14956		5.2307	0	1		+		30298	16677	19039	19144	29186	29186					-0.034026970161789905
SFGHVGGP	8	Unmodified	_SFGHVGGP_					0	0	0		nc|ENSG00000139970|Q16799-2|RTN1;ENST00000432103.6_1_14:60063465-60194426:-|nuORF;ENSG00000139970|ENST00000267484|RTN1	nc|ENSG00000139970|Q16799-2|RTN1	nc|ENSG00000139970|Q16799-2|RTN1	MSMS	HCT116MG_D190212_S1	1	379.2157287597656	2	379.18502	756.355488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.271	1	27.271	26.771	27.771	0								0	0	0	0.8837	1	9888	9888		6.3541	0	1				30299	3651	19040	19145	29187	29187					-0.03243571059419992
SFGIVLLP	8	Unmodified	_SFGIVLLP_					0	0	0			REV__nc|ENSG00000164889|P04920-2|SLC4A2	REV__nc|ENSG00000164889|P04920-2|SLC4A2	MSMS	HCT116MG_D190212_S2	2	423.259765625	2	423.260197	844.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.348	1	32.118	31.618	32.618	-0.23009								0	0	0	0.75335	1	11966	11966		26.341	5.4701	1		+		30300	13028	19041	19146	29188	29188					0.07736775879516244
SFGMHGPL	8	Unmodified	_SFGMHGPL_					0	0	0			REV__ENST00000468058.1_1_19:7975099-7977313:+|nuORF	REV__ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MSMS	HCT116MG_D190212_S4	4	423.20263671875	2	423.202356	844.390159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.12	1	36.735	36.235	37.235	-0.38486								0	0	0	0.8837	1	13610	13610		5.7604	1.4312	1		+		30301	10823	19042	19147	29189	29189					-0.03826071242974649
SFIFYTDFV	9	Unmodified	_SFIFYTDFV_					0	0	0		tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	tr|U7SQR4|U7SQR4_FUSNUGlycosyltransferaseRgtA/B/C/D-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01666PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	380.18548583984375	3	380.186697	1137.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.971	1	58.707	58.207	59.207	-0.26405								0	0	0	0.76902	1	22445	22445		2.4985	0.59211	1				30302	18391	19043	19148	29190	29190					-0.025004815081729248
SFKEANFDPQ	10	Unmodified	_SFKEANFDPQ_					0	0	0			REV__ENSG00000177984|ENST00000316144|LCN15	REV__ENSG00000177984|ENST00000316144|LCN15	MULTI-SECPEP	HCT116MG_D190212_S3	3	591.3587646484375	2	591.774928	1181.5353	0.6522	0.00038596	1.631	0.00096521	2.2832	0.0013512	591.7764464564738	42.757	0.26028	42.453	42.248	42.508	-0.30405					5	4	2	0	0	0	0.30961	1	15888	15888		8.7454	5.1489	1	3345600	+		30303	13587	19044	19149	29191	29191					-0.048203566329675596
SFKFIRFVRFV	11	Unmodified	_SFKFIRFVRFV_					0	0	0			REV__KCND2|p.T488Nfs*13|1|0.32|ENSG00000184408|chr7:120742591-120742592|-/A|frameshift_variant	REV__KCND2|p.T488Nfs*13|1|0.32|ENSG00000184408|chr7:120742591-120742592|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	723.4252319335938	2	723.424439	1444.83433	0.88663	0.00064141	0.49538	0.00035837	1.382	0.00099978	723.4246456343474	54.111	1.434	54.111	53.153	54.587	0					62	27	3	0	0	0	0.74191	1	20781	20781		1.1933	1.1933	1	74010000	+		30304	11142	19045	19150	29192	29192					0.12970185790163669
SFLAALPA	8	Unmodified	_SFLAALPA_					0	0	0		ENST00000587309.5_1_17:43003545-43003737:-|nuORF	ENST00000587309.5_1_17:43003545-43003737:-|nuORF	ENST00000587309.5_1_17:43003545-43003737:-|nuORF	MSMS	HCT116MG_D190212_S4	4	395.2274475097656	2	395.228897	788.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.954	1	41.577	41.077	42.077	-0.37637								0	0	0	0.8837	1	15401	15401		0.79363	0	1				30305	9005	19046	19151	29193	29193					0.04055629811307426
SFLFGGEFYSY	11	Unmodified	_SFLFGGEFYSY_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;ENST00000546538.1_1_19:16643407-16652813:-|nuORF;ENST00000551747.1_1_19:16652231-16653189:-|nuORF	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	658.797607421875	2	658.795329	1315.5761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.479	1	33.096	32.596	33.596	-0.38223								0	0	0	0.94538	1	12189	12189		8.7454	0.58988	1				30306	434	19047	19152	29194	29194					-0.06906015313302305
SFNALLVY	8	Unmodified	_SFNALLVY_					0	0	0			REV__nc|ENSG00000258806|Q8NGC8|OR11H7	REV__nc|ENSG00000258806|Q8NGC8|OR11H7	MULTI-MSMS	HCT116MG_D190212_S2	2	463.75244140625	2	463.752736	925.490919	0.20361	9.4423E-05	0.073234	3.3963E-05	0.27684	0.00012839	463.7525878517635	40.13	0.77724	40.057	39.687	40.465	-0.072838					31	14	3	0	0	0	0.48901	1	15076	15076		42.095	3.9434	1	35730000	+		30307	17312	19048	19153	29195	29195					0.025192840115323634
SFNALLVY	8	Unmodified	_SFNALLVY_					0	0	0			REV__nc|ENSG00000258806|Q8NGC8|OR11H7	REV__nc|ENSG00000258806|Q8NGC8|OR11H7	MULTI-MSMS	HCT116MG_D190212_S3	3	463.7522277832031	2	463.752736	925.490919	0.32661	0.00015147	-0.47698	-0.0002212	-0.15037	-6.9732E-05	463.75253840107774	40.369	0.72865	40.067	39.747	40.476	-0.30161					20	13	2	0	0	0	0.48901	1	14948	14948		42.095	3.9434	1	5307500	+		30308	17312	19048	19153	29196	29196					0.025192840115323634
SFNALLVY	8	Unmodified	_SFNALLVY_					0	0	0			REV__nc|ENSG00000258806|Q8NGC8|OR11H7	REV__nc|ENSG00000258806|Q8NGC8|OR11H7	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	463.752736	925.490919	-0.055962	-2.5953E-05	-0.11856	-5.4984E-05	-0.17453	-8.0937E-05	463.7525353720238	40.12	0.62255	40.12	39.813	40.435	0	0.03882	2.3903E-05	NaN	42.095	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7152400	+		30309	17312	19048	19153							0.025192840115323634
SFNALLVY	8	Unmodified	_SFNALLVY_					0	0	0			REV__nc|ENSG00000258806|Q8NGC8|OR11H7	REV__nc|ENSG00000258806|Q8NGC8|OR11H7	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	463.752736	925.490919	0.20361	9.4423E-05	0.073234	3.3963E-05	0.27684	0.00012839	463.7525878517635	40.13	0.77724	40.057	39.687	40.465	-0.072838	-0.024221	0.0002018	NaN	42.095	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35730000	+		30310	17312	19048	19153							0.025192840115323634
SFNALLVY	8	Unmodified	_SFNALLVY_					0	0	0			REV__nc|ENSG00000258806|Q8NGC8|OR11H7	REV__nc|ENSG00000258806|Q8NGC8|OR11H7	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	463.752736	925.490919	0.32661	0.00015147	-0.47698	-0.0002212	-0.15037	-6.9732E-05	463.75253840107774	40.369	0.72865	40.067	39.747	40.476	-0.30161	-0.014599	-0.00030853	NaN	42.095	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5307500	+		30311	17312	19048	19153							0.025192840115323634
SFNAPCSPE	9	Unmodified	_SFNAPCSPE_					0	0	0			REV__AluSp_dup48944|chr21:8406155-8406395:-|1.560712430635823|0.3319044745033751|2.23|450.0|7|1|anti-sense	REV__AluSp_dup48944|chr21:8406155-8406395:-|1.560712430635823|0.3319044745033751|2.23|450.0|7|1|anti-sense	MSMS	HCT116MG_D190212_S2	2	476.1983337402344	2	476.197467	950.380382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.618	1	62.488	61.988	62.988	-0.12924								0	0	0	0.76913	1	24273	24273		3.9444	1.3669	1		+		30312	9928	19049	19154	29197	29197					-0.09679304039025283
SFNLHPYTA	9	Unmodified	_SFNLHPYTA_					0	0	0			REV__ENSG00000156521|ENST00000287078|TYSND1	REV__ENSG00000156521|ENST00000287078|TYSND1	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2562866210938	2	525.256174	1048.49779	0.40346	0.00021192	-0.56892	-0.00029883	-0.16546	-8.6907E-05	525.2559983729933	16.681	0.20846	16.339	16.256	16.464	-0.34183					7	3	3	0	0	0	0.35128	1	5656	5656		25.399	0.40835	1	7123100	+		30313	12726	19050	19155	29198	29198					-0.024514031078979315
SFNLHPYTA	9	Unmodified	_SFNLHPYTA_					0	0	0			REV__ENSG00000156521|ENST00000287078|TYSND1	REV__ENSG00000156521|ENST00000287078|TYSND1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	525.256174	1048.49779	0.32391	0.00017014	-0.24552	-0.00012896	0.078392	4.1176E-05	525.2561872860728	16.272	0.15615	16.272	16.161	16.317	0	-0.033709	0.00011758	NaN	25.399	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234700	+		30314	12726	19050	19155							-0.024514031078979315
SFNRHKRTHWK	11	Unmodified	_SFNRHKRTHWK_					0	0	0		ENSG00000197857|ENST00000355684|ZNF44;nc|ENSG00000197857|P15621|ZNF44	ENSG00000197857|ENST00000355684|ZNF44	ENSG00000197857|ENST00000355684|ZNF44	MSMS	HCT116MG_D190212_S3	3	748.9049072265625	2	748.902725	1495.7909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.038	1	45.725	45.225	46.225	-0.31237								0	0	0	0.95113	1	17255	17255		5.7319	0	1				30315	6180	19051	19156	29199	29199					0.06283389065629308
SFNRKFLRSL	10	Unmodified	_SFNRKFLRSL_					0	0	0			REV__ENST00000338700.9_1_4:154258246-154258330:+|nuORF	REV__ENST00000338700.9_1_4:154258246-154258330:+|nuORF	MSMS	HCT116MG_D190212_S4	4	634.634765625	2	634.367121	1266.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.505	1	43.131	42.631	43.631	-0.37433								0	0	0	0.95648	1	15994	15994		3.2813	0.28607	1		+		30316	14958	19052	19157	29200	29200					0.09699876308286548
SFPMVKVGRY	10	Unmodified	_SFPMVKVGRY_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MSMS	HCT116MG_D190212_S3	3	592.3175048828125	2	592.318251	1182.62195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.852	1	43.546	43.046	44.046	-0.30616								0	0	0	0.95351	1	16375	16375		3.9444	0	1		+		30317	14017	19053	19158	29201	29201					0.03794351387932693
SFQSESVTEES	11	Unmodified	_SFQSESVTEES_					0	0	0			REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1	REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1	MSMS	HCT116MG_D190212_S2	2	615.4601440429688	2	615.262047	1228.50954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.5	1	40.43	39.93	40.93	-0.069626								0	0	0	0.9465	1	15275	15275		8.1555	1.4324	1		+		30318	13662	19054	19159	29202	29202					-0.09557295665877064
SFRKSSVVGT	10	Unmodified	_SFRKSSVVGT_					0	0	0			REV__FAT1|p.A1316T|1|0.39|ENSG00000083857|chr4:186636611-186636611|C/T|missense_variant	REV__FAT1|p.A1316T|1|0.39|ENSG00000083857|chr4:186636611-186636611|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.7981567382812	2	534.29583	1066.57711	0.66623	0.00035597	0.10872	5.8089E-05	0.77495	0.00041405	534.7975713461527	31.785	0.41422	31.536	31.198	31.613	-0.24883					12	7	2	0	0	0	0.64492	1	11765	11765		24.991	0	1	24084000	+		30319	10909	19055	19160	29203	29203					0.04648243846236255
SFSGGPAG	8	Unmodified	_SFSGGPAG_					0	0	0		ENSG00000175643|ENST00000312499|RMI2	ENSG00000175643|ENST00000312499|RMI2	ENSG00000175643|ENST00000312499|RMI2	MULTI-MSMS	HCT116MG_D190212_S4	4	679.3045043945312	1	679.304581	678.297304	0.70562	0.00047933	-0.11776	-7.9994E-05	0.58786	0.00039934	679.3043738843439	20.641	1.1948	20.44	19.988	21.183	-0.20133					34	22	2	0	0	0	0.50777	1	7183	7183		40.449	0	1	7389000			30320	5391	19056	19161	29204	29204					-0.05471252704717244
SFTTRSTFSTN	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SFTTRSTFSTN_					1	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000470335.1_1_22:20837987-20843498:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000470335.1_1_22:20837987-20843498:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	HCT116MG_D190212_S1	1	646.3035888671875	2	645.801674	1289.58879	0.49236	0.00031797	-0.247	-0.00015951	0.24536	0.00015846	645.8010111599397	39.443	0.25855	39.443	39.294	39.553	0					10	4	3	0	0	0	0.00233	2	14810	14751;14810		150.06	120.22	1	17838000			30321	2271;8146	19057	19162	29205;29206	29206					-0.044416039210773306
SFVPIDTLIAS	11	Unmodified	_SFVPIDTLIAS_					0	0	0			REV__ENST00000236938.10_1_1:161683740-161683920:+|nuORF	REV__ENST00000236938.10_1_1:161683740-161683920:+|nuORF	MSMS	HCT116MG_D190212_S2	2	581.8204956054688	2	581.821347	1161.62814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.234	1	33.039	32.539	33.539	-0.19449								0	0	0	0.8787	1	12324	12324		22.736	4.5899	1		+		30322	14555	19058	19163	29207	29207					0.053791481004282105
SFVPPEKVIVK	11	Unmodified	_SFVPPEKVIVK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	621.8768310546875	2	621.876456	1241.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.829	1	53.5	53	54	-0.32923								0	0	0	0.95636	1	20109	20109		2.9952	0.69251	1		+		30323	12706;18029	19059	19164	29208	29208					0.12715993159440586
SFWKKVLILQ	10	Unmodified	_SFWKKVLILQ_					0	0	0		FGD6|p.K498Nfs*39|1|0.4|ENSG00000180263|chr12:95209790-95209790|T/-|frameshift_variant	FGD6|p.K498Nfs*39|1|0.4|ENSG00000180263|chr12:95209790-95209790|T/-|frameshift_variant	FGD6|p.K498Nfs*39|1|0.4|ENSG00000180263|chr12:95209790-95209790|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	421.2591552734375	3	421.26042	1260.75943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.472	1	49.11	48.61	49.61	-0.36213								0	0	0	0.96804	1	18351	18351		0.69767	0.07084	1				30324	9156	19060	19165	29209	29209					0.13948003258997232
SGAAGPTGPI	10	Unmodified	_SGAAGPTGPI_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF;ENST00000488298.5_1_7:94043536-94045869:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	827.427490234375	1	827.425758	826.418482	0.69333	0.00057368	0.77087	0.00063783	1.4642	0.0012115	827.4261575804676	32.056	0.36336	31.681	31.538	31.901	-0.37529					9	6	2	0	0	0	0.018611	1	11703	11703		123.45	38.179	1	2736800			30325	4715	19061	19166	29210	29210					-0.0016705006204347228
SGAAGPTGPIG	11	Unmodified	_SGAAGPTGPIG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF;ENST00000488298.5_1_7:94043536-94045869:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	884.4475708007812	1	884.447222	883.439946	0.77151	0.00068236	-0.017457	-1.544E-05	0.75405	0.00066692	884.4469801118042	29.6	0.31204	29.251	29.033	29.345	-0.34921					7	5	2	0	0	0	0.0030838	1	10699	10699		147.06	84.486	1	1822700			30326	4715	19062	19167	29211	29211					-0.006436650333171201
SGAAGPTGPIG	11	Unmodified	_SGAAGPTGPIG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF;ENST00000488298.5_1_7:94043536-94045869:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH	HCT116MG_D190212_S3	3		1	884.447222	883.439946	0.89709	0.00079342	-1.1188	-0.00098951	-0.2217	-0.00019608	884.4459615778782	29.466	0.26062	29.23	29.031	29.292	-0.23655	-0.010618	-0.00091092	NaN	147.06	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2212500			30327	4715	19062	19167							-0.006436650333171201
SGAFLGHQ	8	Unmodified	_SGAFLGHQ_					0	0	0			REV__ZIC3|p.R304Gfs*104|1|0.17|ENSG00000156925|chrX:137567597-137567597|C/-|frameshift_variant	REV__ZIC3|p.R304Gfs*104|1|0.17|ENSG00000156925|chrX:137567597-137567597|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	408.7032470703125	2	408.703577	815.392602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.967	1	39.967	39.467	40.467	0								0	0	0	0.8837	1	15008	15008		2.5775	0	1		+		30328	12734	19063	19168	29212	29212					-0.02247899513668017
SGAGAYRL	8	Unmodified	_SGAGAYRL_					0	0	0		ENSG00000185085|ENST00000330574|INTS5;INTS5|p.A801Hfs*4|1|0.19|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-MSMS	HCT116MG_D190212_S2	2	397.7112731933594	2	397.711402	793.408252	-0.092083	-3.6622E-05	0.025893	1.0298E-05	-0.066189	-2.6324E-05	397.71129475999965	25.568	0.2611	25.199	25.03	25.291	-0.36914					8	4	3	0	0	0	0.46267	1	9221	9221		44.407	8.3628	1	46416000			30329	5803	19064	19169	29213	29213					0.003283870033783387
SGAGTDSI	8	Unmodified	_SGAGTDSI_					0	0	0			REV__ENST00000369577.7_1_6:87926067-87928321:+|nuORF	REV__ENST00000369577.7_1_6:87926067-87928321:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	707.3209228515625	1	707.320625	706.313348	1.0012	0.00070818	-0.27533	-0.00019475	0.72589	0.00051343	707.3203593880377	23.76	0.31246	23.377	23.247	23.56	-0.38324					8	5	2	0	0	0	0.19622	1	8506	8506		74.396	0	1	14369000	+		30330	15144	19065	19170	29214	29214					-0.0515559125846039
SGAPCTDRRL	10	Unmodified	_SGAPCTDRRL_					0	0	0		nc|ENSG00000164972|Q8NCR6-4|SPMIP6;nc|ENSG00000164972|Q8NCR6-5|SPMIP6;nc|ENSG00000164972|Q8NCR6-2|SPMIP6;ENSG00000164972|ENST00000297623|C9orf24	nc|ENSG00000164972|Q8NCR6-4|SPMIP6	nc|ENSG00000164972|Q8NCR6-4|SPMIP6	MULTI-SECPEP	HCT116MG_D190212_S1	1	537.7698364257812	2	538.26929	1074.52403	0.52599	0.00028313	1.2581	0.00067722	1.7841	0.00096035	538.2711749262927	27.908	0.26036	27.908	27.8	28.06	0					5	4	2	0	0	0	0.29999	1	10167	10167		18.146	3.741	1	2604100			30331	9529	19066	19171	29215	29215					-0.010254572080839353
SGARRVKR	8	Unmodified	_SGARRVKR_					0	0	0		ENST00000204005.13_1_19:41114149-41118026:+|nuORF	ENST00000204005.13_1_19:41114149-41118026:+|nuORF	ENST00000204005.13_1_19:41114149-41118026:+|nuORF	MSMS	HCT116MG_D190212_S1	1	465.2288818359375	2	465.291217	928.567881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.371	1	15.371	14.871	15.871	0								0	0	0	0.8837	1	5101	5101		8.5933	0.68312	1				30332	6725	19067	19172	29216	29216					0.10073940071220022
SGATPPSHTTH	11	Unmodified	_SGATPPSHTTH_					0	0	0			REV__MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant	REV__MUC6|p.N1717Tfs*10|1|0.03|ENSG00000184956|chr11:1017653-1017653|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	547.7655029296875	2	546.757069	1091.49959	0.33166	0.00018134	-0.062804	-3.4338E-05	0.26886	0.000147	546.7559581530427	19.121	0.6771	18.751	18.263	18.94	-0.3695					25	12	3	0	0	0	0.70073	1	6569	6569		21.537	1.1224	1	29281000	+		30333	13818	19068	19173	29217	29217					-0.042503940899450754
SGCDMGGF	8	Unmodified	_SGCDMGGF_					0	0	0			REV__nc|ENSG00000165588|P32243|OTX2	REV__nc|ENSG00000165588|P32243|OTX2	MSMS	HCT116MG_D190212_S2	2	387.133544921875	2	387.133282	772.25201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.438	1	63.316	62.816	63.816	-0.12264								0	0	0	0.8837	1	24591	24591		0	0	1		+		30334	13065	19069	19174	29218	29218					-0.14322562553741136
SGCGSDSGYG	10	Unmodified	_SGCGSDSGYG_					0	0	0		ENSG00000122145|ENST00000373296|TBX22	ENSG00000122145|ENST00000373296|TBX22	ENSG00000122145|ENST00000373296|TBX22	MULTI-SECPEP	HCT116MG_D190212_S1	1	444.6976623535156	2	445.153257	888.291961	0.1684	7.4965E-05	-1.1675	-0.00051971	-0.99908	-0.00044474	445.15262250632804	16.985	0.15662	16.985	16.889	17.046	0					4	2	2	0	0	0	0.31174	1	5735	5735		0.40072	0.40072	1	2015600			30335	2751	19070	19175	29219	29219					-0.15665344349486077
SGCNSGND	8	Unmodified	_SGCNSGND_					0	0	0			REV__ENSG00000198932|ENST00000537097|GPRASP1	REV__ENSG00000198932|ENST00000537097|GPRASP1	MSMS	HCT116MG_D190212_S1	1	377.1266174316406	2	377.127042	752.239531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.323	1	10.323	9.8231	10.823	0								0	0	0	0.8837	1	3160	3160		0	0	1		+		30336	14168	19071	19176	29220	29220					-0.14649882692447136
SGDDGCVRL	9	Carbamidomethyl (C)	_SGDDGC(Carbamidomethyl (C))VRL_	SGDDGC(1)VRL		SGDDGC(52)VRL		0	1	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L;ENST00000590032.1_1_18:12982523-12982694:+|nuORF	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MSMS	HCT116MG_D190212_S3	3	489.7187194824219	2	489.719098	977.423644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.328	1	31.064	30.564	31.564	-0.26429								0	0	0	0.14112	1	11441	11441		51.63	19.324	1				30337	1454	19072	19177	29221	29221	5				-0.06597114261717252
SGDGGRAEL	9	Unmodified	_SGDGGRAEL_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	431.20648193359375	2	431.206681	860.398809	-0.026968	-1.1629E-05	-0.011633	-5.0164E-06	-0.038602	-1.6645E-05	431.2066107244092	23.242	0.25977	22.856	22.726	22.986	-0.3852					6	4	2	0	0	0	0.17423	1	8309	8309		43.982	7.4756	1	10537000			30338	2386	19073	19178	29222	29222					-0.036974260728015906
SGDGGRAEL	9	Unmodified	_SGDGGRAEL_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	431.206681	860.398809	0.0063631	2.7438E-06	-0.82976	-0.0003578	-0.8234	-0.00035506	431.20637344050385	22.767	0.20852	22.767	22.637	22.845	0	-0.044617	-0.00063695	NaN	43.982	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3145500			30339	2386	19073	19178							-0.036974260728015906
SGDGGRAEL	9	Unmodified	_SGDGGRAEL_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	431.206681	860.398809	-0.026968	-1.1629E-05	-0.011633	-5.0164E-06	-0.038602	-1.6645E-05	431.2066107244092	23.242	0.25977	22.856	22.726	22.986	-0.3852	0.044617	6.862E-05	NaN	43.982	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10537000			30340	2386	19073	19178							-0.036974260728015906
SGDGVTHTV	9	Unmodified	_SGDGVTHTV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;POTEE|p.P864L|1|0.35|ENSG00000188219|chr2:131264046-131264046|C/T|missense_variant;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MSMS	HCT116MG_D190212_S2	2	436.7089538574219	2	436.709057	871.40356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.33	1	20.947	20.447	21.447	-0.38288								0	0	0	0.0092486	1	7501	7501		108	55.729	1				30341	1322	19074	19179	29223	29223					-0.03728541930047413
SGDGVTHTV	9	Unmodified	_SGDGVTHTV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;POTEE|p.P864L|1|0.35|ENSG00000188219|chr2:131264046-131264046|C/T|missense_variant;ENST00000457622.1_1_6:46172676-46173294:+|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	HCT116MG_D190212_S3	3	436.70880126953125	2	436.709057	871.40356	0.047174	2.0601E-05	-0.3937	-0.00017193	-0.34652	-0.00015133	436.70890038282084	20.55	0.20829	20.584	20.454	20.662	0.034473					5	3	2	0	0	0	0.057285	1	7140	7140		71.134	29.039	1	2473100			30342	1322	19074	19179	29224	29224					-0.03728541930047413
SGDKYAVVILG	11	Unmodified	_SGDKYAVVILG_					0	0	0			REV__ENSG00000125871|ENST00000377710|MGME1	REV__ENSG00000125871|ENST00000377710|MGME1	MSMS	HCT116MG_D190212_S1	1	561.3069458007812	2	561.313689	1120.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.402	1	33.402	32.902	33.902	0								0	0	0	0.95408	1	12360	12360		4.1895	0.24511	1		+		30343	11822	19075	19180	29225	29225					0.05734281303239186
SGDQCDNDHD	10	Unmodified	_SGDQCDNDHD_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MSMS	HCT116MG_D190212_S3	3	369.1213073730469	3	369.121087	1104.34143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2405	1	4.2693	3.7693	4.7693	0.028732								0	0	0	0.97045	1	1279	1279		0.15932	0.15932	1		+		30344	10879	19076	19181	29226	29226					-0.20656681131345067
SGDSHSCM	8	Unmodified	_SGDSHSCM_					0	0	0			REV__ENSG00000145087|ENST00000471454|STXBP5L	REV__ENSG00000145087|ENST00000471454|STXBP5L	MSMS	HCT116MG_D190212_S2	2	412.1390380859375	2	412.139095	822.263638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.261	1	34.086	33.586	34.586	-0.17512								0	0	0	0.8837	1	12741	12741		0.79363	0.10326	1		+		30345	12439	19077	19182	29227	29227					-0.15460365530418585
SGDSQPDDPPD	11	Unmodified	_SGDSQPDDPPD_					0	0	0		nc|ENSG00000132016|Q0VDD7-2|BRME1;ENSG00000132016|ENST00000586783|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	MULTI-MSMS	HCT116MG_D190212_S4	4	565.7183227539062	2	565.21764	1128.42073	0.37935	0.00021442	0.72994	0.00041258	1.1093	0.00062699	565.2181425195157	27.901	0.31158	27.58	27.398	27.71	-0.32157					10	5	3	0	0	0	0.69464	1	10007	10007		23.79	2.2528	1	7522500			30346	3166	19078	19183	29228	29228					-0.13834710905553038
SGDVLAKKYAR	11	Unmodified	_SGDVLAKKYAR_					0	0	0		nc|ENSG00000211658|P01718|IGLV3-27	nc|ENSG00000211658|P01718|IGLV3-27	nc|ENSG00000211658|P01718|IGLV3-27	MSMS	HCT116MG_D190212_S4	4	403.2326354980469	3	403.2313	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.5923	1	7.3507	6.8507	7.8507	-0.24153								0	0	0	0.9619	1	2320	2320		0.094841	0	1				30347	9619	19079	19184	29229	29229					0.07700177317406087
SGELLAYQGT	10	Unmodified	_SGELLAYQGT_					0	0	0		ENST00000367255.9_1_6:152464885-152469242:-|nuORF	ENST00000367255.9_1_6:152464885-152469242:-|nuORF	ENST00000367255.9_1_6:152464885-152469242:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	520.646484375	2	519.758746	1037.50294	0.59175	0.00030757	0.26607	0.00013829	0.85782	0.00044586	519.7586486579382	33.501	0.31488	33.118	32.997	33.312	-0.38282					14	7	3	0	0	0	0.76634	1	12188	12188		14.838	0.93222	1	12594000			30348	7382	19080	19185	29230	29230					-0.014311440359506378
SGFGGSEE	8	Unmodified	_SGFGGSEE_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MSMS	HCT116MG_D190212_S2	2	385.1533203125	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1391	1	3.0987	2.5987	3.5987	-0.040353								0	0	0	0.8837	1	1002	1002		0.69038	0	1		+		30349	12234	19081	19186	29231	29231					-0.1008018163813631
SGGELSCQ	8	Unmodified	_SGGELSCQ_					0	0	0			REV__nc|ENSG00000154358|Q5VST9|OBSCN	REV__nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	HCT116MG_D190212_S2	2	780.3196411132812	1	780.319244	779.311968	0.9556	0.00074568	-0.24562	-0.00019166	0.70998	0.00055401	780.318884008117	23.708	0.36466	23.325	23.143	23.508	-0.38324					9	6	2	0	0	0	0.061239	1	8465	8465		111.29	21.86	1	14390000	+		30350	12679	19082	19187	29232	29232					-0.08651548618877314
SGGESSVMCHY	11	Oxidation (M)	_SGGESSVM(Oxidation (M))CHY_		SGGESSVM(1)CHY		SGGESSVM(42)CHY	0	0	1			REV__HMCN1|p.V1339Gfs*22|1|0.42|ENSG00000143341|chr1:186000186-186000186|T/-|frameshift_variant	REV__HMCN1|p.V1339Gfs*22|1|0.42|ENSG00000143341|chr1:186000186-186000186|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	586.72119140625	2	586.720981	1171.42741	0.49058	0.00028784	-0.38703	-0.00022708	0.10355	6.0757E-05	586.7209880082213	25.716	0.3628	25.347	25.187	25.55	-0.36914					17	6	4	0	0	0	0.54229	1	9268	9268		41.84	15.571	1	94708000	+		30351	12383	19083	19188	29233	29233		155			-0.15144812550170172
SGGFARKG	8	Unmodified	_SGGFARKG_					0	0	0		ENST00000392562.5_1_17:73401186-73401555:-|nuORF	ENST00000392562.5_1_17:73401186-73401555:-|nuORF	ENST00000392562.5_1_17:73401186-73401555:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.30023193359375	2	390.211569	778.408586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.548	1	63.548	63.048	64.048	0								0	0	0	0.8837	1	24549	24549		2.5775	0	1				30352	7612	19084	19189	29234	29234					0.010518067232396788
SGGFARKG	8	Unmodified	_SGGFARKG_					0	0	0		ENST00000392562.5_1_17:73401186-73401555:-|nuORF	ENST00000392562.5_1_17:73401186-73401555:-|nuORF	ENST00000392562.5_1_17:73401186-73401555:-|nuORF	MSMS	HCT116MG_D190212_S2	2	390.2122497558594	2	390.211569	778.408586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.45	1	61.307	60.807	61.807	-0.14227								0	0	0	0.8837	1	23801	23801		2.5775	0	1				30353	7612	19084	19189	29235	29235					0.010518067232396788
SGGGGGGCG	9	Unmodified	_SGGGGGGCG_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	HCT116MG_D190212_S2	2	608.7061767578125	1	608.2093	607.202024	0.46964	0.00028564	-2.0905	-0.0012715	-1.6209	-0.00098583	608.2101793900699	11.325	1.1112	11.044	10.475	11.587	-0.28186					69	44	2	0	0	0	0.27073	1	3795	3795		0	0	1	536920	+		30354	12715	19085	19190	29236	29236					-0.11728929167406932
SGGGGGGCG	9	Unmodified	_SGGGGGGCG_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	609.1964111328125	1	608.2093	607.202024	0.53965	0.00032822	-1.4374	-0.00087426	-0.89779	-0.00054604	608.2108269463557	55.488	0.63982	55.196	54.874	55.514	-0.29181					15	11	2	0	0	0	0.77568	1	21088	21088		0	0	1	1054400	+		30355	12715	19085	19190	29237	29237					-0.11728929167406932
SGGGGGGCG	9	Unmodified	_SGGGGGGCG_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	HCT116MG_D190212_S4	4	608.3856811523438	1	608.2093	607.202024	1.1033	0.00067104	-2.0727	-0.0012606	-0.96936	-0.00058957	608.2098437266451	55.809	0.58012	55.497	55.298	55.878	-0.312					16	10	2	0	0	0	0.27073	1	21052	21052		0	0	1	960460	+		30356	12715	19085	19190	29238	29238					-0.11728929167406932
SGGGGGGCG	9	Unmodified	_SGGGGGGCG_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	608.2093	607.202024	0.56181	0.0003417	-1.9333	-0.0011758	-1.3715	-0.00083415	608.2100232745648	11.226	0.64808	11.274	10.937	11.585	0.04739	0.11517	4.2594E-05	NaN	0	74	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782290	+		30357	12715	19085	19190							-0.11728929167406932
SGGGGSSSGGH	11	Unmodified	_SGGGGSSSGGH_					0	0	0			REV__ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant	REV__ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	847.4761962890625	1	846.333649	845.326373	0.90659	0.00076728	0.30675	0.00025961	1.2133	0.0010269	846.3338912090305	40.563	0.25732	40.494	40.365	40.622	-0.069626					7	4	2	0	0	0	0.74191	1	15287	15287		5.7319	0	1	32578000	+		30358	13475	19086	19191	29239	29239					-0.10247760146353357
SGGGGSSSGGH	11	Unmodified	_SGGGGSSSGGH_					0	0	0			REV__ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant	REV__ZBTB4|p.G686Afs*53|1|0.55|ENSG00000174282|chr17:7462925-7462925|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		1	846.333649	845.326373	0.89355	0.00075624	-0.12394	-0.0001049	0.7696	0.00065134	846.3334341895846	40.784	0.2606	40.483	40.319	40.58	-0.30161	-0.0055578	-0.00027159	NaN	5.7319	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2881200	+		30359	13475	19086	19191							-0.10247760146353357
SGGGRGGA	8	Unmodified	_SGGGRGGA_					0	0	0		ENSG00000158435|ENST00000289382|CNOT11	REV__nc|ENSG00000159147|Q9NYP3-2|DONSON	REV__nc|ENSG00000159147|Q9NYP3-2|DONSON	MULTI-MSMS	HCT116MG_D190212_S1	1	618.6458129882812	1	618.295413	617.288137	0.5725	0.00035397	-0.23052	-0.00014253	0.34197	0.00021144	618.2950686877417	33.675	1.145	33.675	33.556	34.701	0					24	21	2	0	0	0	0.87635	1	12759	12759		0.69038	0	1	7734200			30360	4372	19087	19192	29240	29240					-0.03581601270389001
SGGHPLEF	8	Unmodified	_SGGHPLEF_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MSMS	HCT116MG_D190212_S1	1	422.2033386230469	2	422.20341	842.392267	-0.21908	-9.2497E-05	-0.12972	-5.4768E-05	-0.3488	-0.00014726	422.20325207723175	39.475	0.41518	39.475	39.294	39.709	0					10	7	2	0	0	0	0.050259	1	14813	14813		123.1	88.909	1	8755000			30361	2631	19088	19193	29241	29241					-0.035233192335226704
SGGHPLEF	8	Unmodified	_SGGHPLEF_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MSMS	HCT116MG_D190212_S2	2	422.20318603515625	2	422.20341	842.392267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.641	1	39.563	39.063	40.063	-0.077835								0	0	0	0.74658	1	14926	14926		26.884	13.376	1				30362	2631	19088	19193	29242	29242					-0.035233192335226704
SGGKRAAL	8	Unmodified	_SGGKRAAL_					0	0	0		ENST00000327470.4_1_11:22647115-22647214:-|nuORF	ENST00000327470.4_1_11:22647115-22647214:-|nuORF	ENST00000327470.4_1_11:22647115-22647214:-|nuORF	MSMS	HCT116MG_D190212_S4	4	380.18548583984375	2	380.22722	758.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.975	1	58.692	58.192	59.192	-0.28305								0	0	0	0.8837	1	22181	22181		2.5775	0	1				30363	7142	19089	19194	29243	29243					0.05100379757323026
SGGPSFLESGL	11	Unmodified	_SGGPSFLESGL_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MSMS	HCT116MG_D190212_S2	2	525.7591552734375	2	525.758746	1049.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.238	1	52.05	51.55	52.55	-0.18725								0	0	0	0.93717	1	20062	20062		13.042	2.2185	1		+		30364	11616	19090	19195	29244	29244					-0.01983144035943951
SGGRYDLL	8	Unmodified	_SGGRYDLL_					0	0	0		ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	MSMS	HCT116MG_D190212_S1	1	440.7301025390625	2	440.729792	879.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.886	1	17.886	17.386	18.386	0								0	0	0	0.8217	1	6115	6115		20.871	2.7362	1				30365	5681	19091	19196	29245	29245					0.00048638829287028784
SGGSSHCC	8	Unmodified	_SGGSSHCC_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S4	4	369.1217041015625	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.609	1	29.26	28.76	29.76	-0.34921								0	0	0	0.8837	1	10700	10700		0.69038	0	1		+		30366	13879	19092	19197	29246	29246					-0.15180617356338644
SGGSSHCCS	9	Unmodified	_SGGSSHCCS_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MULTI-MSMS	HCT116MG_D190212_S3	3	824.267333984375	1	824.266163	823.258887	0.76108	0.00062734	0.9487	0.00078198	1.7098	0.0014093	824.2665137021361	20.741	0.41634	20.776	20.558	20.975	0.034473					10	7	2	0	0	0	0.74607	1	7213	7213		2.0598	0	1	1704600	+		30367	13879	19093	19198	29247	29247					-0.15981249673188813
SGHAPRFK	8	Unmodified	_SGHAPRFK_					0	0	0			REV__ENST00000255890.8_1_22:23744057-23744278:-|nuORF	REV__ENST00000255890.8_1_22:23744057-23744278:-|nuORF	MSMS	HCT116MG_D190212_S4	4	450.24603271484375	2	450.245944	898.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.622	1	49.26	48.76	49.76	-0.36213								0	0	0	0.8837	1	18412	18412		5.2307	0	1		+		30368	14606	19094	19199	29248	29248					0.02403471022944359
SGHPGPGL	8	Unmodified	_SGHPGPGL_					0	0	0			REV__ENST00000515158.5_1_5:179050143-179050595:-|nuORF	REV__ENST00000515158.5_1_5:179050143-179050595:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	361.18505859375	2	361.18502	720.355488	-0.10093	-3.6454E-05	0.30284	0.00010938	0.20191	7.2926E-05	361.1849860839778	22.663	0.31259	22.663	22.481	22.793	0					12	5	3	0	0	0	0.76257	1	8036	8036		15.768	0	1	34139000	+		30369	16206	19095	19200	29249	29249					-0.01587571059428683
SGIIDKLPRK	10	Unmodified	_SGIIDKLPRK_					0	0	0			REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MSMS	HCT116MG_D190212_S1	1	563.85107421875	2	563.850773	1125.68699	0.28428	0.00016029	0.24528	0.0001383	0.52956	0.00029859	563.8507737409788	60.569	0.61712	60.569	60.387	61.004	0					17	11	3	0	0	0	0.87945	1	23353	23353		3.5965	0.31518	1	63714000	+		30370	13139	19096	19201	29250	29250					0.12917669185435443
SGIVPPTFLE	10	Unmodified	_SGIVPPTFLE_					0	0	0			REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF	REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	530.245361328125	2	530.289682	1058.56481	0.3214	0.00017044	1.0064	0.00053368	1.3278	0.00070412	530.2900257880056	20.06	0.26137	20.06	19.861	20.123	0					7	4	2	0	0	0	0.30738	1	6940	6940		9.3831	2.0939	1	2094700	+		30371	11089	19097	19202	29251	29251					0.037872073831977104
SGIVPPTFLE	10	Unmodified	_SGIVPPTFLE_					0	0	0			REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF	REV__ENST00000556584.5_1_14:50131352-50154906:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	530.289682	1058.56481	0.45603	0.00024183	0.20022	0.00010618	0.65626	0.00034801	530.289765833519	20.751	0.26188	20.371	20.236	20.498	-0.37949	0.15575	-0.00031426	NaN	5.7319	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8392200	+		30372	11089	19097	19202							0.037872073831977104
SGKKKAGKKA	10	Unmodified	_SGKKKAGKKA_					0	0	0			REV__MYH8|p.I922Nfs*6|1|0.33|ENSG00000133020|chr17:10401709-10401710|-/T|frameshift_variant	REV__MYH8|p.I922Nfs*6|1|0.33|ENSG00000133020|chr17:10401709-10401710|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	501.82476806640625	2	501.824558	1001.63456	0.342	0.00017163	0.045034	2.2599E-05	0.38704	0.00019422	501.8244472792559	57.004	0.82891	57.004	56.583	57.412	0					22	15	2	0	0	0	0.87059	1	21966	21966		5.7319	5.7319	1	4982700	+		30373	12013	19098	19203	29252	29252					0.13381130842458333
SGKMEEAG	8	Unmodified	_SGKMEEAG_					0	0	0		ENST00000575722.1_1_18:76737246-76737315:-|nuORF	ENST00000575722.1_1_18:76737246-76737315:-|nuORF	ENST00000575722.1_1_18:76737246-76737315:-|nuORF	MSMS	HCT116MG_D190212_S3	3	404.6793212890625	2	404.678911	807.343268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.854	1	33.561	33.061	34.061	-0.29219								0	0	0	0.8837	1	12440	12440		8.5933	0	1				30374	8920	19099	19204	29253	29253					-0.06810975584778589
SGKRRKKRRHR	11	Unmodified	_SGKRRKKRRHR_					0	0	0		nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497-3|SP100	nc|ENSG00000067066|P23497-3|SP100	MULTI-MSMS	HCT116MG_D190212_S1	1	489.3128662109375	3	488.978414	1463.91341	0.40591	0.00019848	0.18778	9.1822E-05	0.59369	0.0002903	488.9783525740878	54.867	0.30517	54.867	54.739	55.044	0					12	5	4	0	0	0	0.74191	1	21064	21064		0.40827	0	1	120570000			30375	1180	19100	19205	29254	29254					0.2000127058772705
SGKRRKKRRHR	11	Unmodified	_SGKRRKKRRHR_					0	0	0		nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497-3|SP100	nc|ENSG00000067066|P23497-3|SP100	MULTI-MSMS	HCT116MG_D190212_S2	2	488.97882080078125	3	488.978414	1463.91341	0.26968	0.00013187	0.46855	0.00022911	0.73823	0.00036098	488.9784823951118	55.487	0.568	55.301	55.123	55.691	-0.18565					22	10	3	0	0	0	0.74191	1	21409	21409		0.45452	0	1	44049000			30376	1180	19100	19205	29255	29255					0.2000127058772705
SGKRRKKRRHR	11	Unmodified	_SGKRRKKRRHR_					0	0	0		nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497-3|SP100	nc|ENSG00000067066|P23497-3|SP100	MULTI-MATCH	HCT116MG_D190212_S1	1		3	488.978414	1463.91341	0.37611	0.00018391	0.47097	0.0002303	0.84709	0.00041421	488.9784454978268	55.294	0.40728	55.294	55.095	55.503	0	-0.003742	2.853E-06	NaN	0.45452	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11118000			30377	1180	19100	19205							0.2000127058772705
SGLAQEWQ	8	Unmodified	_SGLAQEWQ_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	HCT116MG_D190212_S3	3	459.71954345703125	2	459.719424	917.424296	0.31894	0.00014662	-0.0084589	-3.8887E-06	0.31049	0.00014274	459.7193188516284	20.128	1.5098	20.177	19.791	21.3	0.048109					60	28	4	0	0	0	0.62424	1	6879	6879		30.225	5.5509	1	25783000	+		30378	13360	19101	19206	29256	29256					-0.037719515503795265
SGMGFHAP	8	Unmodified	_SGMGFHAP_					0	0	0		ENSG00000143751|ENST00000272091|SDE2;nc|ENSG00000143751|Q6IQ49-2|SDE2;nc|ENSG00000143751|Q6IQ49-3|SDE2	ENSG00000143751|ENST00000272091|SDE2	ENSG00000143751|ENST00000272091|SDE2	MSMS	HCT116MG_D190212_S2	2	402.17962646484375	2	402.178881	802.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.34038	1	0.33644	-0.16356	0.83644	-0.0039395								0	0	0	0.8837	1	121	121		0.79363	0	1				30379	3830	19102	19207	29257	29257					-0.06586930794139789
SGMRRMTGTP	10	Unmodified	_SGMRRMTGTP_					0	0	0			REV__ENST00000406516.5_1_22:31608394-31654395:+|nuORF	REV__ENST00000406516.5_1_22:31608394-31654395:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	547.2659912109375	2	547.265693	1092.51683	0.56943	0.00031163	-0.40095	-0.00021943	0.16848	9.2203E-05	547.2653686493031	45.231	0.73378	44.859	44.511	45.245	-0.37266					23	16	2	0	0	0	0.74568	1	16609	16609		9.3831	7.5389	1	5055100	+		30380	15414	19103	19208	29258	29258					-0.02572513080144745
SGPAGPAGAPG	11	Unmodified	_SGPAGPAGAPG_					0	0	0		COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant;ENSG00000168542|ENST00000304636|COL3A1	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	COL3A1|p.N1405Sfs*4|1|0.06|ENSG00000168542|chr2:189010849-189010850|-/GTTCAGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	838.4075927734375	1	838.405357	837.398081	0.7061	0.000592	0.10579	8.8691E-05	0.81189	0.00068069	838.4055378363288	19.65	1.1453	19.71	18.918	20.063	0.059828					33	21	2	0	0	0	0.036744	1	6582	6582		115.69	6.0627	1	2783900			30381	519	19104	19209	29259	29259					-0.027122207218440053
SGPAGPSGPR	10	Unmodified	_SGPAGPSGPR_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MULTI-MSMS	HCT116MG_D190212_S3	3	441.72528076171875	2	441.725041	881.435529	0.082479	3.6433E-05	0.27583	0.00012184	0.35831	0.00015827	441.7250568051733	16.137	0.36394	16.223	15.977	16.341	0.085424					10	6	2	0	0	0	0.029154	1	5318	5318		103.82	31.901	1	3312200			30382	3613	19105	19210	29260	29260					-0.00993129456242059
SGPAGPSGPR	10	Unmodified	_SGPAGPSGPR_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MULTI-MSMS	HCT116MG_D190212_S4	4	441.7248840332031	2	441.725041	881.435529	-0.3657	-0.00016154	0.0713	3.1495E-05	-0.2944	-0.00013004	441.72510177299404	16.382	0.33481	16.219	16.02	16.354	-0.16364					9	6	2	0	0	0	0.053614	1	5352	5352		84.522	30.689	1	954880			30383	3613	19105	19210	29261	29261					-0.00993129456242059
SGPAGTPGPQ	10	Unmodified	_SGPAGTPGPQ_					0	0	0		COL3A1|p.P853T|1|0.13|ENSG00000168542|chr2:189003414-189003414|C/A|missense_variant	COL3A1|p.P853T|1|0.13|ENSG00000168542|chr2:189003414-189003414|C/A|missense_variant	COL3A1|p.P853T|1|0.13|ENSG00000168542|chr2:189003414-189003414|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	434.7118835449219	2	434.711599	867.408646	-0.15183	-6.6E-05	0.40849	0.00017757	0.25666	0.00011157	434.7116243498968	17.478	0.46813	17.559	17.273	17.742	0.081358					13	8	2	0	0	0	0.052106	1	5849	5849		85.642	10.713	1	6086800			30384	520	19106	19211	29262	29262					-0.03036238067420527
SGPAGTPGPQ	10	Unmodified	_SGPAGTPGPQ_					0	0	0		COL3A1|p.P853T|1|0.13|ENSG00000168542|chr2:189003414-189003414|C/A|missense_variant	COL3A1|p.P853T|1|0.13|ENSG00000168542|chr2:189003414-189003414|C/A|missense_variant	COL3A1|p.P853T|1|0.13|ENSG00000168542|chr2:189003414-189003414|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	434.7117614746094	2	434.711599	867.408646	-0.064374	-2.7984E-05	0.41223	0.0001792	0.34786	0.00015122	434.71166557467234	17.577	0.67531	17.407	17.173	17.848	-0.17047					20	12	3	0	0	0	0.091457	1	5822	5822		75.761	7.6801	1	4523400			30385	520	19106	19211	29263	29263					-0.03036238067420527
SGPDVTHLPQE	11	Unmodified	_SGPDVTHLPQE_					0	0	0			REV__nc|ENSG00000184371|P09603-2|CSF1	REV__nc|ENSG00000184371|P09603-2|CSF1	MULTI-MSMS	HCT116MG_D190212_S4	4	590.7869262695312	2	590.28566	1178.55677	0.43453	0.0002565	-1.2082	-0.00071318	-0.77367	-0.00045669	590.2849362616494	17.807	1.1924	17.632	16.703	17.896	-0.17501					44	22	3	0	0	0	0.69464	1	5925	5925		23.79	1.0535	1	4740600	+		30386	13794	19107	19212	29264	29264					-0.02536971604217797
SGPGSRISS	9	Unmodified	_SGPGSRISS_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	424.21728515625	2	424.217049	846.419545	0.20941	8.8835E-05	-0.013613	-5.7748E-06	0.1958	8.306E-05	424.21699700992394	17.61	0.31288	17.61	17.411	17.724	0					10	5	3	0	0	0	0.048237	1	6019	6019		75.571	23.941	1	3072100		+	30387	558	19108	19213	29265	29265					-0.009808356931443996
SGPGSRISSS	10	Unmodified	_SGPGSRISSS_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	467.7331237792969	2	467.733063	933.451573	0.43646	0.00020415	0.10899	5.0979E-05	0.54545	0.00025513	467.7329938596831	17.352	0.20877	17.352	17.255	17.463	0					5	3	2	0	0	0	0.32703	1	5943	5943		48.073	10.301	1	2236100		+	30388	558	19109	19214	29266	29266					-0.01781468009994569
SGPGSSRL	8	Unmodified	_SGPGSSRL_					0	0	0		ENSG00000187808|ENST00000343905|SOWAHD	ENSG00000187808|ENST00000343905|SOWAHD	ENSG00000187808|ENST00000343905|SOWAHD	MULTI-MSMS	HCT116MG_D190212_S1	1	380.7008361816406	2	380.701035	759.387516	0.11079	4.2177E-05	-0.54052	-0.00020578	-0.42974	-0.0001636	380.7007800344771	17.489	0.31301	17.489	17.307	17.62	0					7	5	2	0	0	0	0.61955	1	5985	5985		30.637	3.7529	1	3236600			30389	5960	19110	19215	29267	29267					-0.0018020337628286143
SGPHEGPR	8	Unmodified	_SGPHEGPR_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	HCT116MG_D190212_S1	1	836.401611328125	1	836.400941	835.393664	1.0086	0.00084363	-0.044813	-3.7482E-05	0.96383	0.00080615	836.4009246745146	17.341	0.20874	17.341	17.202	17.411	0					5	3	2	0	0	0	0.53394	1	5923	5923		38.151	0	1	1837300			30390	6646	19111	19216	29268	29268					-0.03061685144768944
SGPHEGPR	8	Unmodified	_SGPHEGPR_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	HCT116MG_D190212_S2	2	836.4013671875	1	836.400941	835.393664	0.77808	0.00065078	-0.19415	-0.00016239	0.58392	0.00048839	836.4007895169146	17.602	0.41776	17.247	17.024	17.442	-0.35479					14	7	3	0	0	0	0.28659	1	5987	5987		60.39	0	1	10308000			30391	6646	19111	19216	29269	29269					-0.03061685144768944
SGPHEGPR	8	Unmodified	_SGPHEGPR_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	HCT116MG_D190212_S3	3	419.1961364746094	2	418.704109	835.393664	-0.14443	-6.0474E-05	0.18655	7.8109E-05	0.042118	1.7635E-05	418.7041185669581	17.166	0.93665	17.251	16.912	17.849	0.084467					34	17	3	0	0	0	0.17245	1	5753	5753		48.346	0	1	15296000			30392	6646	19111	19216	29270	29270					-0.03061685144768944
SGPHEGPR	8	Unmodified	_SGPHEGPR_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	HCT116MG_D190212_S4	4	836.40185546875	1	836.400941	835.393664	0.35957	0.00030074	0.37339	0.00031231	0.73296	0.00061305	836.4011472140855	17.265	0.7247	17.095	16.863	17.588	-0.17047					24	13	3	0	0	0	0.36164	1	5682	5682		53.576	6.6547	1	7562500			30393	6646	19111	19216	29271	29271					-0.03061685144768944
SGPRAFSS	8	Unmodified	_SGPRAFSS_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000244776.11_1_6:18258274-18264769:-|nuORF;ENST00000397239.7_1_6:18258274-18264769:-|nuORF;ENST00000505224.5_1_6:18258244-18264760:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	404.7009582519531	2	404.701035	807.387516	-0.060666	-2.4552E-05	0.11774	4.765E-05	0.057075	2.3098E-05	404.7009446491169	22.39	0.26099	22.39	22.22	22.481	0					12	4	3	0	0	0	0.16987	1	7930	7930		79.596	7.674	1	25127000		+	30394	558	19112	19217	29272	29272					-0.02388203376290221
SGPRAFSS	8	Unmodified	_SGPRAFSS_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000244776.11_1_6:18258274-18264769:-|nuORF;ENST00000397239.7_1_6:18258274-18264769:-|nuORF;ENST00000505224.5_1_6:18258244-18264760:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	808.3958129882812	1	808.394793	807.387516	0.8655	0.00069967	0.45413	0.00036712	1.3196	0.0010668	808.3948579629812	22.402	0.20882	22.402	22.272	22.481	0					5	3	2	0	0	0	0.36353	1	7939	7939		53.404	11.564	1	5867100		+	30395	558	19112	19217	29273	29273					-0.02388203376290221
SGPRPTYKPP	10	Unmodified	_SGPRPTYKPP_					0	0	0		nc|ENSG00000117335|P15529-16|CD46;nc|ENSG00000117335|P15529-8|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-16|CD46	nc|ENSG00000117335|P15529-16|CD46	MSMS	HCT116MG_D190212_S4	4	550.2972412109375	2	550.298373	1098.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.508	1	22.279	21.779	22.779	-0.22919								0	0	0	0.95507	1	7833	7833		3.5965	1.2938	1				30396	2570	19113	19218	29274	29274					0.03684547708826358
SGPTQSPAPAA	11	Unmodified	_SGPTQSPAPAA_					0	0	0			REV__ENSG00000170248|ENST00000307296|PDCD6IP	REV__ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	HCT116MG_D190212_S3	3	492.24346923828125	2	492.243264	982.471974	0.15094	7.4297E-05	-0.7332	-0.00036091	-0.58227	-0.00028662	492.24325796591535	18.815	0.57229	18.884	18.615	19.187	0.069157					12	10	2	0	0	0	0.59037	1	6429	6429		36.506	3.0613	1	2324200	+		30397	13285	19114	19219	29275	29275					-0.01996297350194709
SGPVSHAPPP	10	Unmodified	_SGPVSHAPPP_					0	0	0			REV__ENST00000407627.6_1_19:8027511-8027907:-|nuORF	REV__ENST00000407627.6_1_19:8027511-8027907:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	473.243408203125	2	473.243067	944.47158	0.22918	0.00010846	-0.063595	-3.0096E-05	0.16559	7.8362E-05	473.2429330234645	24.67	1.5093	24.587	24.081	25.59	-0.083694					58	28	3	0	0	0	0.32398	1	8901	8901		48.346	2.3249	1	8372800	+		30398	15425	19115	19220	29276	29276					-0.0028767227938715223
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S1	1	591.1784057617188	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.22032	1	0.22032	-0.27968	0.72032	0								0	0	0	0.96208	1	81	81		0	0	1		+		30399	17256	19116	19221	29277	29277					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S1	1	591.1782836914062	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8544	1	2.8544	2.3544	3.3544	0								0	0	0	0.96208	1	858	858		0	0	1		+		30400	17256	19116	19221	29278	29278					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S1	1	591.1785278320312	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.6203	1	6.6203	6.1203	7.1203	0								0	0	0	0.96208	1	1993	1993		0	0	1		+		30401	17256	19116	19221	29279	29279					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S1	1	591.1781616210938	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.726	1	7.726	7.226	8.226	0								0	0	0	0.96208	1	2335	2335		0	0	1		+		30402	17256	19116	19221	29280	29280					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S1	1	591.1784057617188	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7357	1	8.7357	8.2357	9.2357	0								0	0	0	0.96208	1	2635	2635		0	0	1		+		30403	17256	19116	19221	29281	29281					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S1	1	591.1781616210938	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.528	1	13.528	13.028	14.028	0								0	0	0	0.96208	1	4397	4397		0	0	1		+		30404	17256	19116	19221	29282	29282					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S1	1	591.17822265625	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.758	1	64.758	64.258	65.258	0								0	0	0	0.96208	1	24962	24962		0	0	1		+		30405	17256	19116	19221	29283	29283					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S2	2	591.1785278320312	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7212	1	1.708	1.208	2.208	-0.013221								0	0	0	0.96208	1	559	559		0	0	1		+		30406	17256	19116	19221	29284	29284					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S2	2	591.1792602539062	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8589	1	2.8185	2.3185	3.3185	-0.040353								0	0	0	0.96208	1	917	917		0	0	1		+		30407	17256	19116	19221	29285	29285					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S2	2	591.1785278320312	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.4512	1	3.3891	2.8891	3.8891	-0.062129								0	0	0	0.96208	1	1099	1099		0	0	1		+		30408	17256	19116	19221	29286	29286					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S2	2	591.1784057617188	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5842	1	4.4655	3.9655	4.9655	-0.11871								0	0	0	0.96208	1	1443	1443		0	0	1		+		30409	17256	19116	19221	29287	29287					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S2	2	591.178466796875	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.1462	1	5.0275	4.5275	5.5275	-0.11871								0	0	0	0.96208	1	1623	1623		0	0	1		+		30410	17256	19116	19221	29288	29288					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S2	2	591.1786499023438	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9556	1	5.781	5.281	6.281	-0.17458								0	0	0	0.96208	1	1890	1890		0	0	1		+		30411	17256	19116	19221	29289	29289					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S2	2	591.1783447265625	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.207	1	64.091	63.591	64.591	-0.11585								0	0	0	0.96208	1	24861	24861		0	0	1		+		30412	17256	19116	19221	29290	29290					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S3	3	591.1781616210938	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.478	1	64.277	63.777	64.777	-0.2009								0	0	0	0.96208	1	24528	24528		0	0	1		+		30413	17256	19116	19221	29291	29291					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S4	4	591.1787719726562	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9872	1	3.7226	3.2226	4.2226	-0.26456								0	0	0	0.96208	1	1217	1217		0	0	1		+		30414	17256	19116	19221	29292	29292					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S4	4	591.1782836914062	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2494	1	5.9925	5.4925	6.4925	-0.25684								0	0	0	0.96208	1	1906	1906		0	0	1		+		30415	17256	19116	19221	29293	29293					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S4	4	591.1782836914062	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.353	1	13.189	12.689	13.689	-0.16496								0	0	0	0.96208	1	4184	4184		0	0	1		+		30416	17256	19116	19221	29294	29294					-0.24150458524218266
SGRCCPFCCCC	11	Unmodified	_SGRCCPFCCCC_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	HCT116MG_D190212_S4	4	591.1787719726562	2	591.178003	1180.34145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.171	1	63.937	63.437	64.437	-0.23411								0	0	0	0.96208	1	24165	24165		0	0	1		+		30417	17256	19116	19221	29295	29295					-0.24150458524218266
SGRGGGGA	8	Unmodified	_SGRGGGGA_					0	0	0		nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-2|ATXN2	nc|ENSG00000204842|Q99700-4|ATXN2	nc|ENSG00000204842|Q99700-4|ATXN2	MULTI-MSMS	HCT116MG_D190212_S1	1	618.2952270507812	1	618.295413	617.288137	0.5725	0.00035397	-0.23052	-0.00014253	0.34197	0.00021144	618.2950686877417	33.675	1.145	33.675	33.556	34.701	0					24	21	2	0	0	0	0.87685	1	12483	12483		0.6015	0	1	7734200			30418	9611	19117	19222	29296	29296					-0.03581601270389001
SGRGGGRG	8	Unmodified	_SGRGGGRG_					0	0	0		nc|ENSG00000175600|Q9HAC7-4|SUGCT;SUGCT|p.S389Wfs*17|1|0.03|ENSG00000175600|chr7:40749486-40749487|-/ATGGCAAAACACAGAAGTG|frameshift_variant;nc|ENSG00000175600|Q9HAC7-2|SUGCT;ENSG00000175600|ENST00000335693|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT;ENST00000413931.5_1_7:40174640-40220548:+|nuORF	nc|ENSG00000175600|Q9HAC7-4|SUGCT	nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-MSMS	HCT116MG_D190212_S1	1	703.3588256835938	1	703.35941	702.352134	0.83111	0.00058457	-1.4691	-0.0010333	-0.63796	-0.00044871	703.358207932721	30.477	0.25996	30.477	30.347	30.607	0					7	4	2	0	0	0	0.88026	1	11203	11203		0	0	1	6470500			30419	5388	19118	19223	29297	29297					-0.010948211134405028
SGSDGCDC	8	Unmodified	_SGSDGCDC_					0	0	0			REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant	REV__CDH19|p.L614Ffs*16|1|0.27|ENSG00000071991|chr18:66505289-66505290|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	371.98431396484375	2	372.102178	742.189804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.372	1	22.372	21.872	22.872	0								0	0	0	0.8837	1	7917	7917		0	0	1		+		30420	10134	19119	19224	29298	29298					-0.19160333692764198
SGSKVRGKV	9	Unmodified	_SGSKVRGKV_					0	0	0			REV__TMC2|p.K164Rfs*18|1|0.37|ENSG00000149488|chr20:2561941-2561941|A/-|frameshift_variant	REV__TMC2|p.K164Rfs*18|1|0.37|ENSG00000149488|chr20:2561941-2561941|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	459.27984619140625	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.753	1	52.413	51.913	52.913	-0.34023								0	0	0	0.76932	1	19675	19675		3.2813	1.2216	1		+		30421	12564	19120	19225	29299	29299					0.08380295882955124
SGVARPPGQ	9	Unmodified	_SGVARPPGQ_					0	0	0		WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant;ENSG00000176473|ENST00000402312|WDR25	WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	434.73504638671875	2	434.735409	867.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.797	1	17.622	17.122	18.122	-0.17501								0	0	0	0.35515	1	5929	5929		36.127	0	1				30422	5422	19121	19226	29300	29300					0.017234609234265008
SGVEEDTRREG	11	Unmodified	_SGVEEDTRREG_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MSMS	HCT116MG_D190212_S4	4	617.7890014648438	2	617.786555	1233.55856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.948	1	23.689	23.189	24.189	-0.25816								0	0	0	0.8876	1	8412	8412		21.59	3.2171	1				30423	9598	19122	19227	29301	29301					-0.04887962586280992
SGVERQHAAP	10	Unmodified	_SGVERQHAAP_					0	0	0		ENST00000505903.1_1_17:47072677-47072911:-|nuORF	ENST00000505903.1_1_17:47072677-47072911:-|nuORF	ENST00000505903.1_1_17:47072677-47072911:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	526.2678833007812	2	526.267604	1050.52066	0.3572	0.00018798	0.026434	1.3911E-05	0.38363	0.00020189	526.2678988445572	18.032	0.20872	17.676	17.545	17.754	-0.35647					5	3	2	0	0	0	0.72678	1	6200	6200		18.146	1.9972	1	6217900			30424	8455	19123	19228	29302	29302					-0.0025838399044459948
SGVFHALEVP	10	Unmodified	_SGVFHALEVP_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MSMS	HCT116MG_D190212_S4	4	528.27783203125	2	528.279649	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.017	1	28.676	28.176	29.176	-0.34059								0	0	0	0.86471	1	10460	10460		20.454	4.6064	1		+		30425	13520	19124	19229	29303	29303					0.0196545644323578
SGVGKWGP	8	Unmodified	_SGVGKWGP_					0	0	0		ENST00000585601.1_1_19:45377690-45381750:+|nuORF	ENST00000585601.1_1_19:45377690-45381750:+|nuORF	ENST00000585601.1_1_19:45377690-45381750:+|nuORF	MSMS	HCT116MG_D190212_S4	4	394.2068786621094	2	394.208495	786.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.973	1	56.673	56.173	57.173	-0.3004								0	0	0	0.8837	1	21372	21372		0.79363	0	1				30426	8988	19125	19230	29304	29304					0.0006928849170435569
SGVGWSFG	8	Unmodified	_SGVGWSFG_					0	0	0			REV__ENSG00000188501|ENST00000695545|LCTL	REV__ENSG00000188501|ENST00000695545|LCTL	MULTI-SECPEP	HCT116MG_D190212_S2	2	398.21099853515625	2	398.684853	795.355153	0.21088	8.4074E-05	0.025165	1.0033E-05	0.23604	9.4106E-05	398.6847705458437	24.021	0.20697	23.637	23.56	23.767	-0.38324					5	3	2	0	0	0	0.31097	1	8598	8598		11.64	11.64	1	6648100	+		30427	13956	19126	19231	29305	29305					-0.05070990779290696
SGVHEAKDPTP	11	Unmodified	_SGVHEAKDPTP_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	HCT116MG_D190212_S4	4	569.28076171875	2	569.280377	1136.5462	0.6423	0.00036565	-0.051036	-2.9054E-05	0.59126	0.00033659	569.2805749376589	25.572	0.20804	25.292	25.162	25.37	-0.27958					5	3	2	0	0	0	0.71532	1	9096	9096		16.149	0.90062	1	3721600			30428	1728	19127	19232	29306	29306					-0.01660954258682068
SGVLGIEDYS	10	Unmodified	_SGVLGIEDYS_					0	0	0		ENST00000464157.1_1_9:139902696-139903239:-|nuORF;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000464157.1_1_9:139902696-139903239:-|nuORF	ENST00000464157.1_1_9:139902696-139903239:-|nuORF	MSMS	HCT116MG_D190212_S3	3	520.2503051757812	2	520.250754	1038.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.452	1	28.246	27.746	28.746	-0.20593								0	0	0	0.90892	1	10297	10297		13.906	3.0821	1				30429	2112	19128	19233	29307	29307					-0.03074850272855656
SGVVVEEPPP	10	Unmodified	_SGVVVEEPPP_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12	nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-3|CDK12	MSMS	HCT116MG_D190212_S2	2	505.74859619140625	2	505.263665	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.588	1	27.246	26.746	27.746	-0.34201								0	0	0	0.87399	1	10027	10027		19.257	5.3509	1				30430	390	19129	19234	29308	29308					0.008860439694331035
SGVYRRAGRDV	11	Unmodified	_SGVYRRAGRDV_					0	0	0		ENSG00000189114|ENST00000433642|BLOC1S3	ENSG00000189114|ENST00000433642|BLOC1S3	ENSG00000189114|ENST00000433642|BLOC1S3	MSMS	HCT116MG_D190212_S4	4	618.36962890625	2	618.33381	1234.65307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.4	1	39.02	38.52	39.52	-0.38055								0	0	0	0.95113	1	14475	14475		5.7319	0	1				30431	6020	19130	19235	29309	29309					0.04512640746361285
SGWFALKLASK	11	Unmodified	_SGWFALKLASK_					0	0	0		nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	MSMS	HCT116MG_D190212_S1	1	403.23248291015625	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.1363	1	5.1363	4.6363	5.6363	0								0	0	0	0.96208	1	1544	1544		0	0	1				30432	9377	19131	19236	29310	29310					0.08102266811079062
SGWFALKLASK	11	Unmodified	_SGWFALKLASK_					0	0	0		nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	MSMS	HCT116MG_D190212_S1	1	403.2326965332031	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1455	1	8.1455	7.6455	8.6455	0								0	0	0	0.96208	1	2456	2456		0	0	1				30433	9377	19131	19236	29311	29311					0.08102266811079062
SGWFALKLASK	11	Unmodified	_SGWFALKLASK_					0	0	0		nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	MSMS	HCT116MG_D190212_S2	2	403.23260498046875	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5029	1	3.4408	2.9408	3.9408	-0.062129								0	0	0	0.96208	1	1112	1112		0	0	1				30434	9377	19131	19236	29312	29312					0.08102266811079062
SGWFALKLASK	11	Unmodified	_SGWFALKLASK_					0	0	0		nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	MSMS	HCT116MG_D190212_S2	2	403.23236083984375	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8108	1	8.5668	8.0668	9.0668	-0.24401								0	0	0	0.96208	1	2751	2751		0	0	1				30435	9377	19131	19236	29313	29313					0.08102266811079062
SGWFALKLASK	11	Unmodified	_SGWFALKLASK_					0	0	0		nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	MSMS	HCT116MG_D190212_S2	2	403.23260498046875	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.088	1	12.784	12.284	13.284	-0.30453								0	0	0	0.96208	1	4284	4284		0	0	1				30436	9377	19131	19236	29314	29314					0.08102266811079062
SHDCCASE	8	Unmodified	_SHDCCASE_					0	0	0			REV__ENSG00000148481|ENST00000277632|MINDY3	REV__ENSG00000148481|ENST00000277632|MINDY3	MSMS	HCT116MG_D190212_S4	4	426.13690185546875	2	426.136553	850.258552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.21985	1	-0.044714	-0.54471	0.45529	-0.26456								0	0	0	0.8837	1	81	81		0.69038	0.69038	1		+		30437	12546	19132	19237	29315	29315					-0.17256669393054835
SHDIIKAKST	10	Unmodified	_SHDIIKAKST_					0	0	0			REV__ENST00000476742.1_1_3:132424565-132434018:-|nuORF	REV__ENST00000476742.1_1_3:132424565-132434018:-|nuORF	MSMS	HCT116MG_D190212_S4	4	550.30712890625	2	550.308938	1098.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.617	1	34.231	33.731	34.731	-0.38558								0	0	0	0.94339	1	12647	12647		6.2058	3.903	1		+		30438	11500	19133	19238	29316	29316					0.05796513017708094
SHDLIQKWE	9	Unmodified	_SHDLIQKWE_					0	0	0		nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000102230|ENST00000379144|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MSMS	HCT116MG_D190212_S2	2	578.2936401367188	2	578.293288	1154.57202	0.78215	0.00045231	-0.56655	-0.00032763	0.2156	0.00012468	578.2930975478132	43.66	0.2055	43.582	43.453	43.659	-0.078373					8	3	3	0	0	0	0.13316	1	16562	16562		51.63	11.391	1	43513000			30439	1832	19134	19239	29317	29317					0.0009193998364480649
SHECTECD	8	Unmodified	_SHECTECD_					0	0	0		ZNF260|p.G61D|1|0.19|ENSG00000254004|chr19:36515057-36515057|C/T|missense_variant	ZNF260|p.G61D|1|0.19|ENSG00000254004|chr19:36515057-36515057|C/T|missense_variant	ZNF260|p.G61D|1|0.19|ENSG00000254004|chr19:36515057-36515057|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	462.1465759277344	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.762	1	24.383	23.883	24.883	-0.3789								0	0	0	0.8837	1	8887	8887		2.5775	0	1				30440	18722	19135	19240	29318	29318					-0.18456704084189823
SHECTECD	8	Unmodified	_SHECTECD_					0	0	0		ZNF260|p.G61D|1|0.19|ENSG00000254004|chr19:36515057-36515057|C/T|missense_variant	ZNF260|p.G61D|1|0.19|ENSG00000254004|chr19:36515057-36515057|C/T|missense_variant	ZNF260|p.G61D|1|0.19|ENSG00000254004|chr19:36515057-36515057|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	462.14654541015625	2	462.147117	922.279682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.508	1	41.205	40.705	41.705	-0.30257								0	0	0	0.8837	1	15442	15442		2.5775	0	1				30441	18722	19135	19240	29319	29319					-0.18456704084189823
SHEDASTVLPP	11	Unmodified	_SHEDASTVLPP_					0	0	0			REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	576.322265625	2	576.78021	1151.54587	0.52483	0.00030271	0.2162	0.0001247	0.74103	0.00042741	576.7802694016963	33.478	0.41473	33.478	33.296	33.711	0					12	7	2	0	0	0	0.73364	1	12324	12324		9.3831	0	1	45416000	+		30442	10210	19136	19241	29320	29320					-0.023843739785206708
SHEIEKYREQQ	11	Unmodified	_SHEIEKYREQQ_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	HCT116MG_D190212_S3	3	723.8522338867188	2	723.852229	1445.68991	0.52506	0.00038007	0.33838	0.00024494	0.86345	0.00062501	723.8523904835491	22.351	0.52108	22.351	22.042	22.563	0.00074577					12	9	2	0	0	0	0.74109	1	7863	7863		6.6304	1.7334	1	2237000	+		30443	12914	19137	19242	29321	29321					-0.01511152218404277
SHEIYVDPERE	11	Unmodified	_SHEIYVDPERE_					0	0	0		ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	ENSG00000158122|ENST00000375234|PRXL2C	MSMS	HCT116MG_D190212_S4	4	687.6629028320312	2	687.320231	1372.62591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.963	1	48.598	48.098	49.098	-0.365								0	0	0	0.95196	1	18145	18145		5.2969	0.39987	1				30444	4358	19138	19243	29322	29322					-0.04549932375357457
SHGSSSLE	8	Unmodified	_SHGSSSLE_					0	0	0		nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10	nc|ENSG00000104728|O15013-7|ARHGEF10	nc|ENSG00000104728|O15013-7|ARHGEF10	MSMS	HCT116MG_D190212_S4	4	402.1796569824219	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.2036	1	7.9721	7.4721	8.4721	-0.23148								0	0	0	0.8837	1	2506	2506		0.69038	0	1				30445	1947	19139	19244	29323	29323					-0.06336803855469952
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S2	2	432.8852844238281	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.103	1	12.798	12.298	13.298	-0.30453								0	0	0	0.96208	1	4289	4289		0	0	1				30446	2072	19140	19245	29324	29324					-0.0015947610484090546
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S3	3	432.8854064941406	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.12142	1	0.18232	-0.31768	0.68232	0.060905								0	0	0	0.96208	1	48	48		0	0	1				30447	2072	19140	19245	29325	29325					-0.0015947610484090546
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.884765625	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.0074	1	0.7428	0.2428	1.2428	-0.26456								0	0	0	0.96208	1	305	305		0	0	1				30448	2072	19140	19245	29326	29326					-0.0015947610484090546
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.8850402832031	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5552	1	1.2906	0.79063	1.7906	-0.26456								0	0	0	0.96208	1	471	471		0	0	1				30449	2072	19140	19245	29327	29327					-0.0015947610484090546
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.8852844238281	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3905	1	2.1259	1.6259	2.6259	-0.26456								0	0	0	0.96208	1	731	731		0	0	1				30450	2072	19140	19245	29328	29328					-0.0015947610484090546
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.8851623535156	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2215	1	3.9569	3.4569	4.4569	-0.26456								0	0	0	0.96208	1	1291	1291		0	0	1				30451	2072	19140	19245	29329	29329					-0.0015947610484090546
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.8855285644531	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0252	1	4.761	4.261	5.261	-0.26414								0	0	0	0.96208	1	1538	1538		0	0	1				30452	2072	19140	19245	29330	29330					-0.0015947610484090546
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.88519287109375	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1839	1	5.9271	5.4271	6.4271	-0.25684								0	0	0	0.96208	1	1884	1884		0	0	1				30453	2072	19140	19245	29331	29331					-0.0015947610484090546
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.8854675292969	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8986	1	6.6485	6.1485	7.1485	-0.25015								0	0	0	0.96208	1	2114	2114		0	0	1				30454	2072	19140	19245	29332	29332					-0.0015947610484090546
SHHHSRHRSGV	11	Unmodified	_SHHHSRHRSGV_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.A1121Tfs*18|1|0.42|ENSG00000106346|chr7:6154914-6154920|CGCGCCC/-|frameshift_variant	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.8854064941406	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3944	1	9.1847	8.6847	9.6847	-0.20971								0	0	0	0.96208	1	2871	2871		0	0	1				30455	2072	19140	19245	29333	29333					-0.0015947610484090546
SHIQEIIEP	9	Unmodified	_SHIQEIIEP_					0	0	0			REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant	REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	533.2816162109375	2	533.282389	1064.55022	0.096809	5.1627E-05	0.3851	0.00020537	0.48191	0.00025699	533.2825446639083	40.357	0.66915	40.357	40.073	40.742	0					15	12	2	0	0	0	0.055677	1	15196	15196		71.922	3.8416	1	8343500	+		30456	9902	19141	19246	29334	29334					0.020531352350417365
SHIQEIIEP	9	Unmodified	_SHIQEIIEP_					0	0	0			REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant	REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	533.28271484375	2	533.282389	1064.55022	0.60872	0.00032462	0.22947	0.00012237	0.83819	0.00044699	533.2824905634338	40.62	0.98422	40.55	39.897	40.881	-0.069626					45	18	3	0	0	0	0.055677	1	15414	15414		71.922	0	1	78989000	+		30457	9902	19141	19246	29335	29335					0.020531352350417365
SHIQEIIEP	9	Unmodified	_SHIQEIIEP_					0	0	0			REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant	REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2828369140625	2	533.282389	1064.55022	0.59622	0.00031795	0.10742	5.7285E-05	0.70364	0.00037524	533.2824625962593	40.749	0.98962	40.448	39.851	40.84	-0.30161					54	18	5	0	0	0	0.37539	1	14986	14986		24.021	0	1	42212000	+		30458	9902	19141	19246	29336	29336					0.020531352350417365
SHIQEIIEP	9	Unmodified	_SHIQEIIEP_					0	0	0			REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant	REV__AKAP12|p.P150H|1|0.37|ENSG00000131016|chr6:151348840-151348840|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	533.7219848632812	2	533.282389	1064.55022	0.46986	0.00025057	0.20589	0.0001098	0.67575	0.00036036	533.2824382408958	40.815	0.81283	40.436	39.942	40.755	-0.37828					40	16	3	0	0	0	0.055677	2	15093	14865;15093		71.922	3.8656	1	15156000	+		30459	9902	19141	19246	29337;29338	29338					0.020531352350417365
SHLLAIILLL	10	Unmodified	_SHLLAIILLL_					0	0	0		KDELR1|p.L10I|1|0.37|ENSG00000105438|chr19:48391331-48391331|G/T|missense_variant;ENST00000594643.1_1_19:48893647-48894615:-|nuORF;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000105438|ENST00000330720|KDELR1	KDELR1|p.L10I|1|0.37|ENSG00000105438|chr19:48391331-48391331|G/T|missense_variant	KDELR1|p.L10I|1|0.37|ENSG00000105438|chr19:48391331-48391331|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	369.24951171875	3	369.249632	1104.72707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.819	1	17.819	17.319	18.319	0								0	0	0	0.96263	1	6088	6088		1.9064	0.83491	1				30460	2009	19142	19247	29339	29339					0.1788921585598473
SHLLHVVP	8	Unmodified	_SHLLHVVP_					0	0	0			REV__ENST00000486746.5_1_21:45509724-45511845:+|nuORF	REV__ENST00000486746.5_1_21:45509724-45511845:+|nuORF	MSMS	HCT116MG_D190212_S1	1	451.2652893066406	2	451.266345	900.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.95	1	27.95	27.45	28.45	0								0	0	0	0.8837	1	10163	10163		13.508	4.1604	1		+		30461	15997	19143	19248	29340	29340					0.06389812342570167
SHLPGFPCSSP	11	Unmodified	_SHLPGFPCSSP_					0	0	0		ENST00000401878.7_2_7:155573289-155573589:+|nuORF	ENST00000401878.7_2_7:155573289-155573589:+|nuORF	ENST00000401878.7_2_7:155573289-155573589:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	565.9674682617188	2	564.760766	1127.50698	0.49742	0.00028092	0.099937	5.6441E-05	0.59735	0.00033736	564.7608088272681	29.104	1.2873	28.788	28.606	29.893	-0.31613					73	24	4	0	0	0	0.73696	1	10573	10573		8.1555	0.24537	1	395050000			30462	7697	19144	19249	29341	29341					-0.0516737781390475
SHRRKYLT	8	Unmodified	_SHRRKYLT_					0	0	0		ENST00000553688.5_1_14:35777271-35778147:+|nuORF	ENST00000553688.5_1_14:35777271-35778147:+|nuORF	ENST00000553688.5_1_14:35777271-35778147:+|nuORF	MSMS	HCT116MG_D190212_S1	1	354.2059631347656	3	354.205197	1059.59376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7865	1	9.7865	9.2865	10.286	0								0	0	0	0.8837	1	2974	2974		0.45834	0	1				30463	8771	19145	19250	29342	29342					0.06634789522831852
SHRRRRRRRR	10	Unmodified	_SHRRRRRRRR_					0	0	0			REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF	REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	746.4639282226562	2	746.462473	1490.91039	0.88553	0.00066102	1.3961	0.0010421	2.2816	0.0017032	746.4635768895376	55.121	0.25396	55.121	54.994	55.247	0					8	4	3	0	0	0	0.8938	1	21186	21186		0	0	1	64804000	+		30464	15050	19146	19251	29343	29343					0.18457440253564528
SHRRRRRRRR	10	Unmodified	_SHRRRRRRRR_					0	0	0			REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF	REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	746.462473	1490.91039	0.88553	0.00066102	1.3961	0.0010421	2.2816	0.0017032	746.4635768895376	55.121	0.25396	55.121	54.994	55.247	0	0	0	NaN	0	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64804000	+		30465	15050	19146	19251							0.18457440253564528
SHSEEEEE	8	Unmodified	_SHSEEEEE_					0	0	0			REV__ENSG00000198746|ENST00000361720|GPATCH3	REV__ENSG00000198746|ENST00000361720|GPATCH3	MSMS	HCT116MG_D190212_S3	3	488.1794128417969	2	488.180526	974.346499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.736	1	14.816	14.316	15.316	0.080697								0	0	0	0.8837	1	4767	4767		0.79363	0	1		+		30466	14146	19147	19252	29344	29344					-0.14170053997077048
SHSEFLHRQ	9	Unmodified	_SHSEFLHRQ_					0	0	0		TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1;nc|ENSG00000043514|Q9H3H1-3|TRIT1;nc|ENSG00000043514|Q9H3H1-2|TRIT1;nc|ENSG00000043514|Q9H3H1-5|TRIT1	TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	TRIT1|p.L334*|1|0.3|ENSG00000043514|chr1:39847225-39847225|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	570.7815551757812	2	570.780879	1139.5472	0.34982	0.00019967	-0.62437	-0.00035638	-0.27455	-0.00015671	570.7807982334695	28.896	0.20411	28.58	28.453	28.657	-0.31613					6	3	2	0	0	0	0.59184	1	10587	10587		11.64	2.2572	1	28633000			30467	1016	19148	19253	29345	29345					-0.01698695099116776
SHSFLIRRK	9	Unmodified	_SHSFLIRRK_					0	0	0		ENST00000429490.5_1_10:52349918-52349984:-|nuORF	ENST00000429490.5_1_10:52349918-52349984:-|nuORF	ENST00000429490.5_1_10:52349918-52349984:-|nuORF	MSMS	HCT116MG_D190212_S2	2	572.246826171875	2	572.340907	1142.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.454	1	29.153	28.653	29.653	-0.30095								0	0	0	0.768	1	10790	10790		7.9102	0	1				30468	7838	19149	19254	29346	29346					0.10163337965332175
SHSKKKRQRS	10	Unmodified	_SHSKKKRQRS_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MSMS	HCT116MG_D190212_S2	2	621.3610229492188	2	621.362902	1240.71125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.693	1	28.377	27.877	28.877	-0.31613								0	0	0	0.94551	1	10478	10478		5.7319	0.83484	1				30469	6078	19150	19255	29347	29347					0.10052322391675261
SHSPNWQTW	9	Unmodified	_SHSPNWQTW_					0	0	0			REV__ENST00000534296.5_1_11:35211476-35226207:+|nuORF	REV__ENST00000534296.5_1_11:35211476-35226207:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	571.755859375	2	571.75433	1141.49411	0.71764	0.00041031	1.169	0.00066839	1.8867	0.0010787	571.7552428369517	29.615	0.30998	29.314	29.134	29.444	-0.30095					7	5	2	0	0	0	0.65706	1	10859	10859		7.9102	1.187	1	36297000	+		30470	10564	19151	19256	29348	29348					-0.07098072881763073
SHTSSLPG	8	Unmodified	_SHTSSLPG_					0	0	0		MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|16|3|sense	MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|16|3|sense	MER65-int_dup830|chr19:41731202-41731711:+|2.2615833292983227|0.0105726313913534|7.74|478.0|16|3|sense	MSMS	HCT116MG_D190212_S1	1	393.19256591796875	2	393.193042	784.371532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.936	1	15.936	15.436	16.436	0								0	0	0	0.8837	1	5329	5329		14.582	1.0738	1				30471	9328	19152	19257	29349	29349					-0.02927909613185875
SHTVEAAP	8	Unmodified	_SHTVEAAP_					0	0	0		ENST00000342572.12_1_17:80400840-80401323:-|nuORF	ENST00000342572.12_1_17:80400840-80401323:-|nuORF	ENST00000342572.12_1_17:80400840-80401323:-|nuORF	MSMS	HCT116MG_D190212_S3	3	406.2010192871094	2	406.200867	810.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.571	1	21.589	21.089	22.089	0.018446								0	0	0	0.73047	1	7523	7523		28.173	3.4993	1				30472	7229	19153	19258	29350	29350					-0.02559623096146879
SHVAVHPQP	9	Unmodified	_SHVAVHPQP_					0	0	0			REV__ENSG00000139445|ENST00000299162|FOXN4	REV__ENSG00000139445|ENST00000299162|FOXN4	MSMS	HCT116MG_D190212_S2	2	486.2546691894531	2	486.256508	970.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.246	1	30.979	30.479	31.479	-0.26704								0	0	0	0.76603	1	11519	11519		14.838	4.6549	1		+		30473	12262	19154	19259	29351	29351					0.012034363317980024
SHVCRLMNE	9	Unmodified	_SHVCRLMNE_					0	0	0		ENOX1|p.R315C|1|0.37|ENSG00000120658|chr13:43344631-43344631|G/A|missense_variant	ENOX1|p.R315C|1|0.37|ENSG00000120658|chr13:43344631-43344631|G/A|missense_variant	ENOX1|p.R315C|1|0.37|ENSG00000120658|chr13:43344631-43344631|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	544.7512817382812	2	544.752418	1087.49028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.651	1	35.352	34.852	35.852	-0.29922								0	0	0	0.59795	1	13148	13148		24.021	0	1				30474	782	19155	19260	29352	29352					-0.04996201971493974
SHVEEAAGGPQ	11	Unmodified	_SHVEEAAGGPQ_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	HCT116MG_D190212_S3	3	1081.4918212890625	1	1081.49088	1080.4836	0.27999	0.00030281	0.11046	0.00011946	0.39045	0.00042227	1081.4909426547456	16.698	0.46823	16.782	16.548	17.016	0.084467					10	8	2	0	0	0	0.50491	1	5591	5591		45.7	5.4604	1	2404400			30475	5520	19156	19261	29353	29353					-0.0534210032685678
SHVQGSSTTL	10	Unmodified	_SHVQGSSTTL_					0	0	0			REV__nc|ENSG00000172845|Q02447-4|SP3;REV__ENST00000414049.1_1_13:90014155-90014710:-|nuORF	REV__ENST00000414049.1_1_13:90014155-90014710:-|nuORF	MSMS	HCT116MG_D190212_S1	1	508.75469970703125	2	508.753995	1015.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.166	1	22.166	21.666	22.666	0								0	0	0	0.89062	1	7834	7834		17.113	0.1706	1		+		30476	15460;13406	19157	19262	29354	29354					-0.013689123214589927
SIAEVVHQL	9	Unmodified	_SIAEVVHQL_					0	0	0		GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant;ENST00000504435.1_1_4:882633-887812:-|nuORF	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	498.2799072265625	2	498.279649	994.544745	0.47804	0.0002382	-0.045974	-2.2908E-05	0.43207	0.00021529	498.27966517483793	45.896	0.20923	45.896	45.765	45.975	0					9	3	3	0	0	0	0.0067688	1	17403	17403		122.18	29.688	1	29548000			30477	9177	19158	19263	29355	29355					0.04725456443236453
SIAEVVHQL	9	Unmodified	_SIAEVVHQL_					0	0	0		GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;GAK|p.L730*|1|0.09|ENSG00000178950|chr4:870772-870772|C/-|frameshift_variant;ENST00000504435.1_1_4:882633-887812:-|nuORF	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	498.279296875	2	498.279649	994.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.896	1	45.794	45.294	46.294	-0.1014								0	0	0	0.0019432	1	17466	17466		125.53	6.6344	1				30478	9177	19158	19263	29356	29356					0.04725456443236453
SIAHEHMSIHI	11	Unmodified	_SIAHEHMSIHI_					0	0	0		ENST00000001008.5_1_12:2912594-2912684:+|nuORF	ENST00000001008.5_1_12:2912594-2912684:+|nuORF	ENST00000001008.5_1_12:2912594-2912684:+|nuORF	MSMS	HCT116MG_D190212_S2	2	637.8177490234375	2	637.819147	1273.62374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.312	1	38.219	37.719	38.719	-0.09301								0	0	0	0.95113	1	14389	14389		5.7319	0.43497	1				30479	6708	19159	19264	29357	29357					-0.0021263959411044198
SIAIGYAIIA	10	Unmodified	_SIAIGYAIIA_					0	0	0		tr|U7SJ80|U7SJ80_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02139PE=4SV=1	tr|U7SJ80|U7SJ80_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02139PE=4SV=1	tr|U7SJ80|U7SJ80_FUSNUNSSfamilyneurotransmitter:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02139PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	496.3041687011719	2	496.294768	990.574983	0.55128	0.0002736	-0.33856	-0.00016803	0.21272	0.00010557	496.2945659707793	44.853	0.31087	44.768	44.588	44.899	-0.084797					11	5	3	0	0	0	0.25173	1	17069	17069		27.629	2.2295	1	17357000			30480	18312	19160	19265	29358	29358					0.07931815108429419
SIARGQKIP	9	Unmodified	_SIARGQKIP_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MSMS	HCT116MG_D190212_S4	4	485.27239990234375	2	485.295633	968.576714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.577	1	37.193	36.693	37.693	-0.3839								0	0	0	0.76694	1	13795	13795		11.64	0.81637	1				30481	3984	19161	19266	29359	29359					0.09116868917044485
SIATEIILEI	10	Unmodified	_SIATEIILEI_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MSMS	HCT116MG_D190212_S1	1	551.3248901367188	2	551.323722	1100.63289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.442	1	43.442	42.942	43.942	0								0	0	0	0.86471	1	16412	16412		20.454	0	1				30482	2567	19162	19267	29360	29360					0.0866003224321048
SIAVFLVVCV	10	Unmodified	_SIAVFLVVCV_					0	0	0		nc|ENSG00000117598|Q32ZL2-2|PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-MSMS	HCT116MG_D190212_S4	4	524.9676513671875	2	525.306821	1048.59909	0.39973	0.00020998	0.25274	0.00013276	0.65247	0.00034275	525.3067771506155	48.008	0.99476	47.639	47.234	48.229	-0.36907					38	22	2	0	0	0	0.87801	1	17979	17979		3.9444	0	1	5058500			30483	2581	19163	19268	29361	29361					0.07673332270451283
SIAVSTGP	8	Unmodified	_SIAVSTGP_					0	0	0			REV__ENST00000505193.1_1_4:73307870-73433103:-|nuORF	REV__ENST00000505193.1_1_4:73307870-73433103:-|nuORF	MSMS	HCT116MG_D190212_S2	2	366.2019348144531	2	366.200336	730.386119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.819	1	42.749	42.249	43.249	-0.069984								0	0	0	0.8837	1	16217	16217		5.7604	0	1		+		30484	9859	19164	19269	29362	29362					0.010141625349660899
SIAVVNHSIK	10	Unmodified	_SIAVVNHSIK_					0	0	0			REV__tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	REV__tr|U7SGL3|U7SGL3_FUSNUOutermembraneeffluxproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02229PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	534.31201171875	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.705	1	39.705	39.205	40.205	0								0	0	0	0.94339	1	14902	14902		6.2058	0.97511	1		+		30485	17672	19165	19270	29363	29363					0.08285120742925756
SICKVRKFL	9	Unmodified	_SICKVRKFL_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MSMS	HCT116MG_D190212_S2	2	547.3326416015625	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.555	1	41.487	40.987	41.987	-0.068199								0	0	0	0.76818	1	15705	15705		7.2892	0	1		+		30486	14233	19166	19271	29364	29364					0.10515245630199388
SIDDQSQQSY	10	Unmodified	_SIDDQSQQSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	585.7496337890625	2	585.749107	1169.48366	0.61868	0.00036239	-0.36439	-0.00021344	0.25429	0.00014895	585.7488865612653	25.217	0.46923	24.842	24.712	25.181	-0.37521					17	8	3	0	0	0	0.019418	1	9081	9081		121.53	28.368	1	37699000			30487	3925	19167	19272	29365	29365					-0.09430145117516986
SIDDQSQQSY	10	Unmodified	_SIDDQSQQSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	585.7493286132812	2	585.749107	1169.48366	0.57239	0.00033528	-0.15554	-9.111E-05	0.41685	0.00024417	585.7489795146948	25.174	0.41699	25.068	24.891	25.308	-0.10618					20	7	4	0	0	0	0.023406	1	8961	8961		114.2	10.782	1	24060000			30488	3925	19167	19272	29366	29366					-0.09430145117516986
SIDDQSQQSY	10	Unmodified	_SIDDQSQQSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	585.7493896484375	2	585.749107	1169.48366	0.58616	0.00034334	0.066825	3.9143E-05	0.65298	0.00038248	585.7491401808347	25.312	0.31208	25.032	24.85	25.162	-0.27958					7	5	2	0	0	0	0.52513	1	8975	8975		33.445	14.083	1	3436400			30489	3925	19167	19272	29367	29367					-0.09430145117516986
SIDDQSQQSY	10	Unmodified	_SIDDQSQQSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	585.749107	1169.48366	0.56023	0.00032816	-0.15699	-9.1955E-05	0.40325	0.0002362	585.7488582694252	24.909	0.3667	24.909	24.725	25.092	0	-0.054216	5.1886E-05	NaN	121.53	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5374900			30490	3925	19167	19272							-0.09430145117516986
SIDHVEFWLRQ	11	Unmodified	_SIDHVEFWLRQ_					0	0	0			REV__CPNE4|p.R92W|1|0.26|ENSG00000196353|chr3:131723532-131723532|G/A|missense_variant	REV__CPNE4|p.R92W|1|0.26|ENSG00000196353|chr3:131723532-131723532|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	715.3619995117188	2	715.364776	1428.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.325	1	22.939	22.439	23.439	-0.3852								0	0	0	0.94538	1	8307	8307		8.7454	0.58988	1		+		30491	10285	19168	19273	29368	29368					0.01778947374850759
SIDKLRAKY	9	Unmodified	_SIDKLRAKY_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MSMS	HCT116MG_D190212_S2	2	547.3222045898438	2	547.321848	1092.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.435	1	29.134	28.634	29.634	-0.30095								0	0	0	0.768	1	10782	10782		7.9102	0	1		+		30492	10724	19169	19274	29369	29369					0.08653407259998858
SIDKTGENF	9	Unmodified	_SIDKTGENF_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MSMS	HCT116MG_D190212_S1	1	505.7430419921875	2	505.743096	1009.47164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.035	1	28.035	27.535	28.535	0								0	0	0	0.00072443	1	10198	10198		128.93	63.697	1				30493	6199	19170	19275	29370	29370					-0.03271717070037994
SIDKTGENF	9	Unmodified	_SIDKTGENF_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7429504394531	2	505.743096	1009.47164	0.42367	0.00021427	-0.43867	-0.00022186	-0.015009	-7.5906E-06	505.74270630444545	28.472	0.36047	28.142	27.977	28.338	-0.32987					11	6	3	0	0	0	0.00446	1	10382	10382		143.91	62.019	1	56629000			30494	6199	19170	19275	29371	29371					-0.03271717070037994
SIDKTGENF	9	Unmodified	_SIDKTGENF_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7425231933594	2	505.743096	1009.47164	0.34316	0.00017355	-0.42425	-0.00021456	-0.081099	-4.1015E-05	505.74277003693146	28.416	0.31284	28.21	28.072	28.385	-0.20593					11	5	3	0	0	0	0.011034	1	10284	10284		110.79	48.22	1	12354000			30495	6199	19170	19275	29372	29372					-0.03271717070037994
SIDKTGENF	9	Unmodified	_SIDKTGENF_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	HCT116MG_D190212_S4	4	505.74395751953125	2	505.743096	1009.47164	0.19009	9.6135E-05	0.18065	9.1362E-05	0.37074	0.0001875	505.74313786640215	28.578	0.20755	28.246	28.116	28.324	-0.33138					5	3	2	0	0	0	0.29516	1	10301	10301		31.268	2.1868	1	3430300			30496	6199	19170	19275	29373	29373					-0.03271717070037994
SIDNDHGNLY	10	Unmodified	_SIDNDHGNLY_					0	0	0		RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant;ENSG00000205517|ENST00000380456|RGL3;nc|ENSG00000205517|Q3MIN7-2|RGL3	RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant	RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	574.25439453125	2	574.25436	1146.49417	0.32113	0.00018441	-2.8569	-0.0016406	-2.5358	-0.0014562	574.2526470186093	30.985	0.41342	30.718	30.56	30.974	-0.26704					14	7	3	0	0	0	0.14637	1	11406	11406		64.927	34.702	1	36626000			30497	6385	19171	19276	29374	29374					-0.07322117672401873
SIDNDHGNLY	10	Unmodified	_SIDNDHGNLY_					0	0	0		RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant;ENSG00000205517|ENST00000380456|RGL3;nc|ENSG00000205517|Q3MIN7-2|RGL3	RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant	RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	574.2543334960938	2	574.25436	1146.49417	0.3735	0.00021448	-0.99954	-0.00057399	-0.62604	-0.00035951	574.2535276480157	31.105	0.41757	30.844	30.656	31.074	-0.26071					15	7	3	0	0	0	0.079802	1	11353	11353		78.06	34.202	1	10788000			30498	6385	19171	19276	29375	29375					-0.07322117672401873
SIDNDHGNLY	10	Unmodified	_SIDNDHGNLY_					0	0	0		RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant;ENSG00000205517|ENST00000380456|RGL3;nc|ENSG00000205517|Q3MIN7-2|RGL3	RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant	RGL3|p.R630Q|1|0.38|ENSG00000205517|chr19:11397455-11397455|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	574.254638671875	2	574.25436	1146.49417	0.42455	0.0002438	0.024823	1.4255E-05	0.44937	0.00025805	574.2542767648655	31.212	0.20535	30.842	30.714	30.919	-0.37026					6	3	2	0	0	0	0.099369	1	11332	11332		74.2	48.8	1	3731500			30499	6385	19171	19276	29376	29376					-0.07322117672401873
SIDQSYITDDY	11	Unmodified	_SIDQSYITDDY_					0	0	0			REV__ENST00000530346.5_1_6:2398912-2399118:+|nuORF	REV__ENST00000530346.5_1_6:2398912-2399118:+|nuORF	MSMS	HCT116MG_D190212_S1	1	660.2879638671875	2	660.285522	1318.55649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.961	1	37.961	37.461	38.461	0								0	0	0	0.94416	1	14198	14198		9.3831	1.473	1		+		30500	16308	19172	19277	29377	29377					-0.0900443611474202
SIDQTGELL	9	Unmodified	_SIDQTGELL_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	HCT116MG_D190212_S2	2	975.4999389648438	1	975.499317	974.492041	0.63966	0.00062399	-0.020425	-1.9924E-05	0.61924	0.00060407	975.4990296847076	46.144	0.25725	46.043	45.915	46.172	-0.1014					6	4	2	0	0	0	0.041798	1	17593	17593		78.728	10.647	1	20513000			30501	6057;9595	19173	19278	29378	29378					0.003774535897946407
SIDQTGELL	9	Unmodified	_SIDQTGELL_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	HCT116MG_D190212_S3	3	975.499267578125	1	975.499317	974.492041	0.83399	0.00081356	-0.51481	-0.0005022	0.31918	0.00031136	975.4989029733022	46.425	0.28897	46.112	45.942	46.231	-0.31237					7	5	2	0	0	0	0.027442	1	17428	17428		88.954	10.804	1	4407300			30502	6057;9595	19173	19278	29379	29379					0.003774535897946407
SIDSPDSLEN	10	Unmodified	_SIDSPDSLEN_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	HCT116MG_D190212_S1	1	538.7408447265625	2	538.740751	1075.46695	0.44222	0.00023824	-0.11341	-6.1098E-05	0.32882	0.00017715	538.7406568583924	16.517	0.15617	16.517	16.421	16.577	0					4	2	2	0	0	0	0.73913	1	5583	5583		17.113	0	1	2468500			30503	1187	19174	19279	29380	29380					-0.06776646003459064
SIDSVVEF	8	Unmodified	_SIDSVVEF_					0	0	0		CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant;ENSG00000016602|ENST00000370563|CLCA4;CLCA4|p.M240I|1|0.09|ENSG00000016602|chr1:86565436-86565436|G/A|missense_variant	CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	895.4398803710938	1	895.44074	894.433463	0.91584	0.00082008	-0.63344	-0.00056721	0.2824	0.00025287	895.4394736171126	57.99	0.1563	57.702	57.572	57.728	-0.28879					4	2	2	0	0	0	0.62424	1	21787	21787		30.225	5.5509	1	2925600			30504	471	19175	19280	29381	29381					-0.017976029846977326
SIEIETPT	8	Unmodified	_SIEIETPT_					0	0	0		nc|ENSG00000152457|Q96SD1-4|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C;ENST00000378249.5_1_10:14977545-14995911:-|nuORF;ENST00000418843.5_2_10:14977491-14987187:-|nuORF	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	MSMS	HCT116MG_D190212_S3	3	445.2291259765625	2	445.22929	888.444028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.918	1	26.749	26.249	27.249	-0.16933								0	0	0	0.8837	1	9678	9678		8.5933	0	1				30505	650	19176	19281	29382	29382					-0.0046562033029431404
SIEIFDNSI	9	Unmodified	_SIEIFDNSI_					0	0	0		tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S4	4	518.7532958984375	2	519.261122	1036.50769	0.53196	0.00027623	1.3391	0.00069537	1.8711	0.00097159	519.2617229560805	35.932	0.43291	35.546	35.433	35.866	-0.38606					15	9	2	0	0	0	0.21227	1	13215	13215		15.847	6.4641	1	5510600			30506	18430	19177	19282	29383	29383					-0.00910259893203147
SIETHHKSFPS	11	Unmodified	_SIETHHKSFPS_					0	0	0			REV__ENSG00000154415|ENST00000284601|PPP1R3A	REV__ENSG00000154415|ENST00000284601|PPP1R3A	MULTI-SECPEP	HCT116MG_D190212_S1	1	634.7757568359375	2	635.314751	1268.61495	0.84964	0.00053979	-0.92289	-0.00058632	-0.073248	-4.6536E-05	635.3141361495441	31.05	0.15622	31.05	30.919	31.076	0					4	2	2	0	0	0	0.36308	1	11418	11418		7.609	1.4032	1	2637800	+		30507	12680	19178	19283	29384	29384					-0.008612899589479639
SIETHHKSFPS	11	Unmodified	_SIETHHKSFPS_					0	0	0			REV__ENSG00000154415|ENST00000284601|PPP1R3A	REV__ENSG00000154415|ENST00000284601|PPP1R3A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	635.314751	1268.61495	0.60327	0.00038327	-1.5973	-0.0010148	-0.99398	-0.00063149	635.8146825155941	31.296	0.25738	31.039	30.83	31.087	-0.25677	-0.0053713	-0.00065985	NaN	4.5289	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9293100	+		30508	12680	19178	19283							-0.008612899589479639
SIFFLNSY	8	Unmodified	_SIFFLNSY_					0	0	0		ENST00000249647.7_1_15:42823724-42823898:+|nuORF	ENST00000249647.7_1_15:42823724-42823898:+|nuORF	ENST00000249647.7_1_15:42823724-42823898:+|nuORF	MSMS	HCT116MG_D190212_S1	1	495.7501525878906	2	495.750193	989.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.934	1	32.934	32.434	33.434	0								0	0	0	0.70483	1	12170	12170		30.225	12.09	1				30509	6795	19179	19284	29385	29385					-0.00933019851095196
SIFKFIKIW	9	Unmodified	_SIFKFIKIW_					0	0	0			REV__PKD2L2|p.F477Lfs*7|1|0.39|ENSG00000078795|chr5:137921733-137921733|T/-|frameshift_variant	REV__PKD2L2|p.F477Lfs*7|1|0.39|ENSG00000078795|chr5:137921733-137921733|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	591.3589477539062	2	591.357702	1180.70085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.171	1	39.87	39.37	40.37	-0.30137								0	0	0	0.76973	1	14905	14905		1.8442	0	1		+		30510	10842	19180	19285	29386	29386					0.11772946684504859
SIFKTLRTI	9	Unmodified	_SIFKTLRTI_					0	0	0		ENSG00000044012|ENST00000372581|GUCA2B	ENSG00000044012|ENST00000372581|GUCA2B	ENSG00000044012|ENST00000372581|GUCA2B	MSMS	HCT116MG_D190212_S3	3	360.2259521484375	3	360.225486	1077.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.32	1	41.018	40.518	41.518	-0.30185								0	0	0	0.76849	1	15368	15368		3.8763	0	1				30511	1017	19181	19286	29387	29387					0.11890881782437646
SIFSVTAHDP	10	Unmodified	_SIFSVTAHDP_					0	0	0		PCDHGA5|p.A499Rfs*19|1|0.26|ENSG00000253485|chr5:141365821-141365821|G/-|frameshift_variant;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;ENSG00000253485|ENST00000518069|PCDHGA5	PCDHGA5|p.A499Rfs*19|1|0.26|ENSG00000253485|chr5:141365821-141365821|G/-|frameshift_variant	PCDHGA5|p.A499Rfs*19|1|0.26|ENSG00000253485|chr5:141365821-141365821|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	358.1835632324219	3	358.513585	1072.51892	0.012955	4.6446E-06	-0.31054	-0.00011133	-0.29758	-0.00010669	358.5134112989116	24.281	0.26205	24.281	24.098	24.36	0					9	4	3	0	0	0	0.86339	1	8635	8635		3.5871	0.95582	1	10842000			30512	6586	19182	19287	29388	29388					-0.014434377990710345
SIGCILFEYY	10	Unmodified	_SIGCILFEYY_					0	0	0		nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF	nc|ENSG00000179335|P49761-3|CLK3	nc|ENSG00000179335|P49761-3|CLK3	MSMS	HCT116MG_D190212_S1	1	604.7133178710938	2	604.288825	1206.5631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.935	1	24.935	24.435	25.435	0								0	0	0	0.86471	1	8948	8948		20.454	0	1				30513	5550	19183	19288	29389	29389					-0.03192169697081226
SIGEAKEQFY	10	Unmodified	_SIGEAKEQFY_					0	0	0		MDGA2|p.L178Ffs*6|1|0.4|ENSG00000139915|chr14:47144129-47144130|-/A|frameshift_variant;MDGA2|p.S323Vfs*25|2|0.18|ENSG00000139915|chr14:47096876-47096877|-/T|frameshift_variant;MDGA2|p.G334Dfs*22|6|0.17|ENSG00000139915|chr14:47061568-47061568|T/-|frameshift_variant;MDGA2|p.S451Ifs*22|1|0.27|ENSG00000139915|chr14:47035272-47035273|-/T|frameshift_variant;nc|ENSG00000139915|Q7Z553|MDGA2;MDGA2|p.I945Lfs*8|1|0.13|ENSG00000139915|chr14:46841973-46841973|A/-|frameshift_variant;ENSG00000139915|ENST00000399232|MDGA2	MDGA2|p.L178Ffs*6|1|0.4|ENSG00000139915|chr14:47144129-47144130|-/A|frameshift_variant	MDGA2|p.L178Ffs*6|1|0.4|ENSG00000139915|chr14:47144129-47144130|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	586.283447265625	2	586.285128	1170.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.295	1	25.016	24.516	25.516	-0.27958								0	0	0	0.89062	1	8957	8957		17.113	3.2068	1				30514	3649	19184	19289	29390	29390					-0.022751859731215518
SIGFLVVILY	10	Unmodified	_SIGFLVVILY_					0	0	0			REV__ENST00000577952.1_1_18:71816037-71822462:+|nuORF	REV__ENST00000577952.1_1_18:71816037-71822462:+|nuORF	MSMS	HCT116MG_D190212_S3	3	562.795654296875	2	562.341718	1122.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.655	1	54.36	53.86	54.86	-0.29587								0	0	0	0.93854	1	20715	20715		7.2892	0	1		+		30515	10808	19185	19290	29391	29391					0.11245534210729602
SIGGGAQY	8	Unmodified	_SIGGGAQY_					0	0	0		PICK1|p.T82Nfs*2|1|0.25|ENSG00000100151|chr22:38065088-38065089|-/A|frameshift_variant;ENST00000469819.5_1_22:38453534-38461185:+|nuORF;ENST00000466374.1_1_22:38453534-38463917:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	PICK1|p.T82Nfs*2|1|0.25|ENSG00000100151|chr22:38065088-38065089|-/A|frameshift_variant	PICK1|p.T82Nfs*2|1|0.25|ENSG00000100151|chr22:38065088-38065089|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	752.3580322265625	1	752.357345	751.350068	0.96743	0.00072785	-0.43167	-0.00032477	0.53576	0.00040308	752.3570587068382	19.804	0.83077	19.429	19.091	19.922	-0.37503					19	15	2	0	0	0	0.44484	1	6902	6902		46.021	1.6139	1	7124700			30516	1669	19186	19291	29392	29392					-0.03555294641910223
SIGGLRIPEI	10	Unmodified	_SIGGLRIPEI_					0	0	0			REV__nc|ENSG00000103549|O75150-4|RNF40	REV__nc|ENSG00000103549|O75150-4|RNF40	MULTI-MSMS	HCT116MG_D190212_S1	1	527.8165283203125	2	527.816399	1053.61824	0.252	0.00013301	-0.17973	-9.4866E-05	0.07227	3.8145E-05	527.8164198958898	43.569	0.2065	43.569	43.42	43.626	0					6	3	2	0	0	0	0.11897	1	16469	16469		70.332	2.4938	1	17231000	+		30517	11196	19187	19292	29393	29393					0.09358004885712035
SIGHQWYWTYE	11	Unmodified	_SIGHQWYWTYE_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MSMS	HCT116MG_D190212_S3	3	490.5545959472656	3	490.554331	1468.64116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.401	1	63.187	62.687	63.687	-0.21454								0	0	0	0.9619	1	24201	24201		0.094841	0	1				30518	6255	19188	19293	29394	29394					-0.07441020787473462
SIGLLFIFLT	10	Unmodified	_SIGLLFIFLT_					0	0	0			REV__tr|U7T6V8|U7T6V8_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00025PE=3SV=1	REV__tr|U7T6V8|U7T6V8_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00025PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	562.3434448242188	2	562.341718	1122.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.599	1	44.599	44.099	45.099	0								0	0	0	0.92607	1	16876	16876		10.074	2.7847	1		+		30519	18002	19189	19294	29395	29395					0.11245534210684127
SIHDVTFQV	9	Unmodified	_SIHDVTFQV_					0	0	0		IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant	IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	523.7708129882812	2	523.269281	1044.52401	0.24488	0.00012814	-0.26316	-0.00013771	-0.018283	-9.5667E-06	523.2692921354411	44.33	0.21505	44.33	44.195	44.41	0					8	3	3	0	0	0	0.016134	1	16787	16787		100.37	58.277	1	15409000			30520	817	19190	19295	29396	29396					0.0035286606357658457
SIHDVTFQV	9	Unmodified	_SIHDVTFQV_					0	0	0		IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant;IBTK|p.F642Vfs*29|1|0.2|ENSG00000005700|chr6:82214507-82214508|-/C|frameshift_variant;IBTK|p.M1160*|1|0.13|ENSG00000005700|chr6:82191170-82191170|T/-|frameshift_variant;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.K1213Sfs*50|1|0.13|ENSG00000005700|chr6:82181966-82181966|T/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK	IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant	IBTK|p.Q590Sfs*9|1|0.41|ENSG00000005700|chr6:82214663-82214664|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	523.26904296875	2	523.269281	1044.52401	0.28913	0.00015129	-0.29747	-0.00015566	-0.0083333	-4.3605E-06	523.2690604838165	44.333	0.21061	44.249	44.115	44.325	-0.084797					6	3	2	0	0	0	0.027492	1	16861	16861		88.904	50.93	1	28430000			30521	817	19190	19295	29397	29397					0.0035286606357658457
SIHLPHAPL	9	Unmodified	_SIHLPHAPL_					0	0	0			REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	493.2813720703125	2	492.784902	983.55525	0.30588	0.00015073	0.20193	9.9508E-05	0.50781	0.00025024	492.7848242195069	42.096	0.67393	42.028	41.549	42.223	-0.068195					23	12	3	0	0	0	0.49914	1	15761	15761		16.942	3.0362	1	30538000	+		30522	13248	19191	19296	29398	29398					0.06281483888312778
SIHTLEDPRDP	11	Unmodified	_SIHTLEDPRDP_					0	0	0		ATP4A|p.E523Sfs*49|1|0.09|ENSG00000105675|chr19:35557782-35557782|G/-|frameshift_variant;ENSG00000105675|ENST00000262623|ATP4A	ATP4A|p.E523Sfs*49|1|0.09|ENSG00000105675|chr19:35557782-35557782|G/-|frameshift_variant	ATP4A|p.E523Sfs*49|1|0.09|ENSG00000105675|chr19:35557782-35557782|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	640.3173828125	2	640.317491	1278.62043	0.92	0.00058909	-0.41073	-0.000263	0.50927	0.0003261	640.3172333268004	17.594	0.20851	17.594	17.463	17.672	0					8	3	3	0	0	0	0.55672	1	6000	6000		40.239	15.248	1	11357000			30523	226	19192	19297	29399	29399					-0.00773611167164745
SIIDKLVNI	9	Unmodified	_SIIDKLVNI_					0	0	0		KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant;nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;KITLG|p.G209Wfs*41|1|0.41|ENSG00000049130|chr12:88507118-88507119|-/G|frameshift_variant;ENSG00000049130|ENST00000644744|KITLG	KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant	KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	507.813232421875	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.026	1	55.026	54.526	55.526	0								0	0	0	0.044501	1	21118	21118		71.922	15.745	1				30524	1039	19193	19298	29400	29400					0.10583486654184071
SIIDKLVNI	9	Unmodified	_SIIDKLVNI_					0	0	0		KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant;nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;KITLG|p.G209Wfs*41|1|0.41|ENSG00000049130|chr12:88507118-88507119|-/G|frameshift_variant;ENSG00000049130|ENST00000644744|KITLG	KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant	KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	507.8135986328125	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.156	1	54.968	54.468	55.468	-0.18797								0	0	0	0.0001246	1	21254	21254		133.05	36.941	1				30525	1039	19193	19298	29401	29401					0.10583486654184071
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	HCT116MG_D190212_S1	1	500.3134765625	2	500.313492	998.612431	0.37704	0.00018864	0.015146	7.5779E-06	0.39219	0.00019622	500.3134740892207	56.454	0.20576	56.454	56.326	56.531	0					9	3	4	0	0	0	0.0081783	1	21704	21704		117.84	38.241	1	407400000			30526	5250	19194	19299	29402	29402					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	HCT116MG_D190212_S2	2	999.6204223632812	1	999.619707	998.612431	0.60071	0.00060048	0.27337	0.00027327	0.87408	0.00087375	999.6199020420386	56.52	0.15846	56.338	56.259	56.418	-0.18261					4	2	2	0	0	0	0.1535	1	21836	21836		47.594	18.513	1	59196000			30527	5250	19194	19299	29403	29403					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MATCH	HCT116MG_D190212_S1	1		1	999.619707	998.612431	0.71677	0.0007165	-0.12176	-0.00012171	0.59502	0.00059479	999.6192711227599	56.454	0.15411	56.454	56.326	56.48	0	0.058182	-0.00026239	NaN	47.594	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28081000			30528	5250	19194	19299							0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	500.313492	998.612431	0.50769	0.000254	-0.13347	-6.6778E-05	0.37421	0.00018722	500.3134847955724	56.52	0.26374	56.338	56.207	56.471	-0.18261	-0.058182	-0.00010887	NaN	117.84	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	689810000			30529	5250	19194	19299							0.11306906374034043
SIIPPDMI	8	Unmodified	_SIIPPDMI_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MSMS	HCT116MG_D190212_S4	4	443.2430114746094	2	443.241147	884.46774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.555	1	32.176	31.676	32.676	-0.37924								0	0	0	0.31385	1	11862	11862		53.576	7.5546	1				30530	1427	19195	19300	29404	29404					0.020885219025331025
SIIQRLLEV	9	Unmodified	_SIIQRLLEV_					0	0	0		PPP1CC|p.D10N|1|0.32|ENSG00000186298|chr12:110742680-110742680|C/T|missense_variant;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC	PPP1CC|p.D10N|1|0.32|ENSG00000186298|chr12:110742680-110742680|C/T|missense_variant	PPP1CC|p.D10N|1|0.32|ENSG00000186298|chr12:110742680-110742680|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	536.3338012695312	2	535.832049	1069.64954	0.55194	0.00029575	-0.26239	-0.0001406	0.28955	0.00015515	536.3333933299059	56.997	0.15574	56.818	56.739	56.895	-0.17904					4	2	2	0	0	0	0.13424	1	22024	22024		51.415	7.6428	1	23950000			30531	5878	19196	19301	29405	29405					0.11750577919792704
SIIRSHRT	8	Unmodified	_SIIRSHRT_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7;WDR7|p.S493Qfs*3|1|0.08|ENSG00000091157|chr18:56696357-56696357|T/-|frameshift_variant;WDR7|p.K551Nfs*3|1|0.2|ENSG00000091157|chr18:56718033-56718033|A/-|frameshift_variant;WDR7|p.L1146Hfs*7|1|0.04|ENSG00000091157|chr18:56880075-56880076|-/ATAGAATCTCAACT|frameshift_variant	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MSMS	HCT116MG_D190212_S2	2	485.25982666015625	2	485.283057	968.551562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.109	1	50.931	50.431	51.431	-0.17868								0	0	0	0.8837	1	19602	19602		12.532	0	1				30532	1556	19197	19302	29406	29406					0.06602814114467037
SIIVALREV	9	Unmodified	_SIIVALREV_					0	0	0			REV__tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	REV__tr|U7T5W3|U7T5W3_FUSNUOxaloacetatedecarboxylase(Na(+)extruding)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00409PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	500.313720703125	2	500.313492	998.612431	0.50769	0.000254	-0.13347	-6.6778E-05	0.37421	0.00018722	500.3134847955724	56.52	0.26374	56.338	56.207	56.471	-0.18261					10	4	3	0	0	0	0.090581	1	21832	21832		60.074	4.5712	1	689810000	+		30533	17991	19198	19303	29407	29407					0.11306906374045411
SIKALRNANLR	11	Unmodified	_SIKALRNANLR_					0	0	0		PDGFD|p.I214Nfs*5|1|0.23|ENSG00000170962|chr11:103943583-103943584|-/T|frameshift_variant;nc|ENSG00000170962|Q9GZP0-2|PDGFD;ENSG00000170962|ENST00000393158|PDGFD	PDGFD|p.I214Nfs*5|1|0.23|ENSG00000170962|chr11:103943583-103943584|-/T|frameshift_variant	PDGFD|p.I214Nfs*5|1|0.23|ENSG00000170962|chr11:103943583-103943584|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	419.5921630859375	3	419.257961	1254.75205	-0.20006	-8.3879E-05	-0.63783	-0.00026741	-0.83789	-0.00035129	419.2576081946619	50.411	0.82489	50.411	49.905	50.73	0					29	15	2	0	0	0	0.74191	1	19342	19342		0.40827	0	1	36322000			30534	5171	19199	19304	29408	29408					0.13486663711250912
SIKEKLYYARQ	11	Unmodified	_SIKEKLYYARQ_					0	0	0			REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	REV__tr|U7T2B6|U7T2B6_FUSNULonproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=lonPE=2SV=1	MSMS	HCT116MG_D190212_S1	1	699.8920288085938	2	699.890626	1397.7667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.403	1	38.403	37.903	38.903	0								0	0	0	0.95343	1	14377	14377		4.5289	0.33936	1		+		30535	17920	19200	19305	29409	29409					0.08372691068734639
SIKIISLIM	9	Unmodified	_SIKIISLIM_					0	0	0			REV__tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1	REV__tr|U7T2L0|U7T2L0_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00611PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.3226013183594	2	509.322471	1016.63039	0.42321	0.00021555	0.0090428	4.6057E-06	0.43225	0.00022015	509.3222723954319	57.1	0.20721	56.921	56.792	56.999	-0.17904					7	3	3	0	0	0	0.30117	1	22069	22069		30.637	3.0077	1	23056000	+		30536	17926	19201	19306	29410	29410					0.12273905304550681
SIKIKPKKLHF	11	Unmodified	_SIKIKPKKLHF_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MSMS	HCT116MG_D190212_S3	3	669.9359130859375	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.317	1	49.001	48.501	49.501	-0.31596								0	0	0	0.95581	1	18569	18569		3.2813	0	1		+		30537	13961	19202	19307	29411	29411					0.19931356450001658
SIKIKPKKLHF	11	Unmodified	_SIKIKPKKLHF_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MSMS	HCT116MG_D190212_S3	3	669.9356689453125	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.687	1	54.391	53.891	54.891	-0.29587								0	0	0	0.95581	1	20727	20727		3.2813	0	1		+		30538	13961	19202	19307	29412	29412					0.19931356450001658
SIKIVKKLK	9	Unmodified	_SIKIVKKLK_					0	0	0		ENSG00000165733|ENST00000374518|BMS1;ENST00000413293.1_1_22:22663100-22664193:+|nuORF;ENST00000554269.1_1_15:20362738-20365460:+|nuORF	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MSMS	HCT116MG_D190212_S1	1	352.9213562011719	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7397	1	2.7397	2.2397	3.2397	0								0	0	0	0.76998	1	823	823		0.96228	0	1				30539	4797	19203	19308	29413	29413					0.21740922092863002
SIKLFVMAV	9	Unmodified	_SIKLFVMAV_					0	0	0			REV__ENST00000370783.7_1_X:134022618-134022738:-|nuORF	REV__ENST00000370783.7_1_X:134022618-134022738:-|nuORF	MSMS	HCT116MG_D190212_S3	3	504.3013916015625	2	504.301539	1006.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.851	1	42.546	42.046	43.046	-0.30472								0	0	0	0.76781	1	15975	15975		8.5933	3.3626	1		+		30540	15158	19204	19309	29414	29414					0.08549349616009749
SIKREVRVRKR	11	Unmodified	_SIKREVRVRKR_					0	0	0			REV__ENST00000314845.7_1_11:46418495-46418936:-|nuORF	REV__ENST00000314845.7_1_11:46418495-46418936:-|nuORF	MSMS	HCT116MG_D190212_S2	2	476.3062438964844	3	476.307426	1425.90045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.385	1	50.213	49.713	50.713	-0.1719								0	0	0	0.95954	1	19310	19310		0.45452	0	1		+		30541	14857	19205	19310	29415	29415					0.20453394684955128
SILAKKKVM	9	Unmodified	_SILAKKKVM_					0	0	0		ENSG00000118900|ENST00000262376|UBN1;nc|ENSG00000118900|Q9NPG3-2|UBN1;UBN1|p.R716Gfs*129|1|0.3|ENSG00000118900|chr16:4874551-4874551|A/-|frameshift_variant	ENSG00000118900|ENST00000262376|UBN1	ENSG00000118900|ENST00000262376|UBN1	MSMS	HCT116MG_D190212_S1	1	509.32916259765625	2	509.328088	1016.64162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.381	1	58.381	57.881	58.881	0								0	0	0	0.76902	1	22488	22488		4.3292	2.2695	1				30542	2619	19206	19311	29416	29416					0.13396727398674102
SILAKLKKKK	10	Unmodified	_SILAKLKKKK_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MSMS	HCT116MG_D190212_S2	2	386.27484130859375	3	386.276181	1155.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.35	1	42.281	41.781	42.781	-0.069351								0	0	0	0.97054	1	16028	16028		0.13989	0	1				30543	149	19207	19312	29417	29417					0.2350428252996153
SILAKLKKKK	10	Unmodified	_SILAKLKKKK_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MSMS	HCT116MG_D190212_S2	2	386.2746887207031	3	386.276181	1155.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.375	1	43.301	42.801	43.801	-0.073376								0	0	0	0.96804	1	16444	16444		0.69767	0.53834	1				30544	149	19207	19312	29418	29418					0.2350428252996153
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7984008789062	2	533.798206	1065.58186	0.68801	0.00036726	-0.32378	-0.00017283	0.36423	0.00019443	533.7979050140782	41.68	0.31189	41.68	41.498	41.81	0					14	5	4	0	0	0	0.0035933	1	15703	15703		176.84	80.726	1	64731000			30545	1949	19208	19313	29419	29419					0.05169127988983746
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7984008789062	2	533.798206	1065.58186	0.60741	0.00032423	-0.5281	-0.0002819	0.079305	4.2333E-05	533.797861296682	41.695	0.41204	41.627	41.396	41.808	-0.068199					20	7	4	0	0	0	0.0035147	1	15763	15763		168.66	79.705	1	110370000			30546	1949	19208	19313	29420	29420					0.05169127988983746
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		ENSG00000109654|ENST00000338700|TRIM2;nc|ENSG00000109654|Q9C040|TRIM2;TRIM2|p.V492*|1|0.15|ENSG00000109654|chr4:153315525-153315525|G/-|frameshift_variant	ENSG00000109654|ENST00000338700|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	MULTI-MSMS	HCT116MG_D190212_S1	1	932.5299072265625	1	932.529889	931.522613	0.86063	0.00080256	0.056181	5.2391E-05	0.91681	0.00085495	932.5297245354762	51.889	0.26453	51.889	51.704	51.968	0					7	4	2	0	0	0	0.019399	1	19837	19837		97.075	29.731	1	20105000			30547	2214	19209	19314	29421	29421					0.054112319748242044
SILGHPFAAQA	11	Unmodified	_SILGHPFAAQA_					0	0	0		ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MSMS	HCT116MG_D190212_S2	2	556.29638671875	2	556.298373	1110.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.006	1	57.833	57.333	58.333	-0.17298								0	0	0	0.95196	1	22407	22407		5.2969	0.54088	1				30548	1030	19210	19315	29422	29422					0.031325477088330445
SILGPVKRIL	10	Unmodified	_SILGPVKRIL_					0	0	0			REV__ENST00000492337.5_1_3:181328352-181417456:+|nuORF	REV__ENST00000492337.5_1_3:181328352-181417456:+|nuORF	MSMS	HCT116MG_D190212_S4	4	548.364501953125	2	548.366059	1094.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.129	1	46.759	46.259	47.259	-0.37038								0	0	0	0.95507	1	17423	17423		3.5965	0	1		+		30549	16052	19211	19316	29423	29423					0.17399447570460325
SILHDVVEV	9	Unmodified	_SILHDVVEV_					0	0	0		ENST00000572148.1_1_17:4863453-4863890:-|nuORF;ENSG00000091640|ENST00000206020|SPAG7	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7795104980469	2	505.779482	1009.54441	0.77866	0.00039383	-0.0026436	-1.3371E-06	0.77601	0.00039249	505.77929216126466	46.624	0.25702	46.512	46.369	46.626	-0.11121					6	4	2	0	0	0	0.023611	1	17786	17786		92.822	35.351	1	25455000			30550	1567	19212	19317	29424	29424					0.04002036723386482
SILLKKLMY	9	Unmodified	_SILLKKLMY_					0	0	0			REV__ENSG00000171492|ENST00000337338|LRRC8D	REV__ENSG00000171492|ENST00000337338|LRRC8D	MSMS	HCT116MG_D190212_S1	1	554.8426513671875	2	554.843571	1107.67259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.819	1	26.819	26.319	27.319	0								0	0	0	0.76781	1	9706	9706		8.5933	2.3875	1		+		30551	13348	19213	19318	29425	29425					0.12305880712892758
SILPFYQTF	9	Unmodified	_SILPFYQTF_					0	0	0		tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	tr|U7SER3|U7SER3_FUSNUPutativemanganeseeffluxpumpMntPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=mntPPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	558.292236328125	2	558.292225	1114.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.506	1	56.324	55.824	56.824	-0.18261								0	0	0	0.74436	1	21805	21805		16.942	1.0951	1				30552	18287	19214	19319	29426	29426					0.01719511245778449
SILRGIFSVP	10	Unmodified	_SILRGIFSVP_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.5335693359375	2	544.826766	1087.63898	0.15581	8.4887E-05	4.3824	0.0023877	4.5382	0.0024725	544.8309520934516	49.954	0.15369	49.79	49.686	49.84	-0.16369					4	2	2	0	0	0	0.2916	1	19099	19099		17.113	8.3675	1	9256800			30553	4542	19215	19320	29427	29427					0.09866595265384603
SINASNNFNL	10	Unmodified	_SINASNNFNL_					0	0	0		ENSG00000107518|ENST00000355044|ATRNL1;ENST00000424738.1_1_10:117226695-117357303:+|nuORF	ENSG00000107518|ENST00000355044|ATRNL1	ENSG00000107518|ENST00000355044|ATRNL1	MSMS	HCT116MG_D190212_S4	4	547.26611328125	2	547.26727	1092.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.926	1	45.554	45.054	46.054	-0.37206								0	0	0	0.8981	1	16959	16959		16.149	3.1066	1				30554	2115	19216	19321	29428	29428					-0.022572234301378558
SINSHATEWSP	11	Unmodified	_SINSHATEWSP_					0	0	0		nc|ENSG00000066855|Q15390-2|MTFR1	nc|ENSG00000066855|Q15390-2|MTFR1	nc|ENSG00000066855|Q15390-2|MTFR1	MULTI-MSMS	HCT116MG_D190212_S2	2	614.7835693359375	2	614.783284	1227.55202	0.38047	0.00023391	0.15312	9.4136E-05	0.53359	0.00032804	615.2847733356106	45.737	0.77077	45.636	45.144	45.915	-0.1014					19	14	2	0	0	0	0.52486	1	17403	17403		43.772	14.691	1	37346000			30555	9375	19217	19322	29429	29429					-0.05265855747029491
SINSHATEWSP	11	Unmodified	_SINSHATEWSP_					0	0	0		nc|ENSG00000066855|Q15390-2|MTFR1	nc|ENSG00000066855|Q15390-2|MTFR1	nc|ENSG00000066855|Q15390-2|MTFR1	MULTI-MSMS	HCT116MG_D190212_S3	3	614.7838134765625	2	614.783284	1227.55202	0.56516	0.00034745	0.3202	0.00019686	0.88537	0.00054431	614.7835259984224	46.061	0.47209	45.748	45.303	45.775	-0.31237					17	9	2	0	0	0	0.65047	2	17212	17212;17240		29.841	7.1825	1	7164400			30556	9375	19217	19322	29430;29431	29430					-0.05265855747029491
SIPPHGSVVP	10	Unmodified	_SIPPHGSVVP_					0	0	0			REV__ENSG00000134760|ENST00000257192|DSG1	REV__ENSG00000134760|ENST00000257192|DSG1	MULTI-MSMS	HCT116MG_D190212_S1	1	495.7847900390625	2	495.274367	988.53418	0.25994	0.00012874	-0.65203	-0.00032293	-0.39209	-0.00019419	495.2740702986141	42.971	0.57355	42.971	42.743	43.316	0					18	10	3	0	0	0	0.64004	1	16286	16286		25.399	0.72543	1	11784000	+		30557	12066	19218	19323	29432	29432					0.03945473788803611
SIPVYKKRWK	10	Unmodified	_SIPVYKKRWK_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-SECPEP	HCT116MG_D190212_S3	3	652.3953247070312	2	652.895515	1303.77648	0.69674	0.0004549	1.9324	0.0012617	2.6291	0.0017166	652.8966393413361	55.672	0.16391	55.385	55.247	55.411	-0.28773					4	2	2	0	0	0	0.3093	1	21127	21127		2.9952	2.9952	1	2154000			30558	1561	19219	19324	29433	29433					0.13673923864757853
SIQGDQEP	8	Unmodified	_SIQGDQEP_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MSMS	HCT116MG_D190212_S3	3	437.201904296875	2	437.201064	872.387576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.886	1	35.586	35.086	36.086	-0.30042								0	0	0	0.44863	1	13241	13241		46.021	7.8698	1		+		30559	14288	19220	19325	29434	29434					-0.053722481669524313
SIQGPPGP	8	Unmodified	_SIQGPPGP_					0	0	0		COL13A1|p.P517Qfs*9|1|0.22|ENSG00000197467|chr10:69930447-69930447|C/-|frameshift_variant;nc|ENSG00000197467|Q5TAT6-11|COL13A1;nc|ENSG00000197467|Q5TAT6-9|COL13A1;nc|ENSG00000197467|Q5TAT6-10|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1	REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant;nc|ENSG00000197467|Q5TAT6-10|COL13A1	REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	376.7002868652344	2	376.700503	751.386454	-0.0090587	-3.4124E-06	-0.25987	-9.7895E-05	-0.26893	-0.00010131	376.70033910126926	30.084	0.26012	29.727	29.597	29.857	-0.3571					6	4	2	0	0	0	0.81097	1	10918	10918		10.183	0	1	4194300			30560	10240;6149	19221	19326	29435	29435					0.0008158225480201509
SIQSAEKEL	9	Unmodified	_SIQSAEKEL_					0	0	0		nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	HCT116MG_D190212_S2	2	502.7666320800781	2	502.766571	1003.51859	0.42909	0.00021573	-0.37541	-0.00018874	0.053684	2.6991E-05	502.7663015583367	25.424	0.36486	25.055	24.874	25.239	-0.36926					12	6	3	0	0	0	0.30117	1	9157	9157		30.637	7.9003	1	65627000			30561	9684	19222	19327	29436	29436					0.016971424811004
SIQTPEQY	8	Unmodified	_SIQTPEQY_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	HCT116MG_D190212_S2	2	965.45751953125	1	965.457453	964.450176	0.72672	0.00070161	-0.16967	-0.00016381	0.55705	0.00053781	965.4573765691414	27.127	0.31684	26.774	26.606	26.923	-0.35254					7	5	2	0	0	0	0.51336	1	9859	9859		39.957	0	1	13689000			30562	5071	19223	19328	29437	29437					-0.03347102098769028
SIQVSPLRRKK	11	Unmodified	_SIQVSPLRRKK_					0	0	0		ENST00000277865.4_1_10:88811263-88811500:-|nuORF	ENST00000277865.4_1_10:88811263-88811500:-|nuORF	ENST00000277865.4_1_10:88811263-88811500:-|nuORF	MSMS	HCT116MG_D190212_S3	3	656.4116821289062	2	656.414603	1310.81465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.393	1	47.078	46.578	47.578	-0.31525								0	0	0	0.94755	1	17797	17797		7.609	2.3121	1				30563	6932	19224	19329	29438	29438					0.17167809779425625
SIQWRTEEKRK	11	Unmodified	_SIQWRTEEKRK_					0	0	0			REV__ENST00000409202.7_1_2:68962069-68962258:+|nuORF	REV__ENST00000409202.7_1_2:68962069-68962258:+|nuORF	MSMS	HCT116MG_D190212_S3	3	730.5648193359375	2	730.902057	1459.78956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.514	1	52.207	51.707	52.707	-0.30639								0	0	0	0.9465	1	19854	19854		8.1555	0	1		+		30564	15432	19225	19330	29439	29439					0.07805710186198667
SIRLFQRVV	9	Unmodified	_SIRLFQRVV_					0	0	0		ENST00000299427.10_2_11:6635118-6635532:-|nuORF	ENST00000299427.10_2_11:6635118-6635532:-|nuORF	ENST00000299427.10_2_11:6635118-6635532:-|nuORF	MSMS	HCT116MG_D190212_S4	4	373.2330322265625	3	373.232864	1116.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.151	1	54.833	54.333	55.333	-0.31774								0	0	0	0.76995	1	20642	20642		1.0715	0	1				30565	6990	19226	19331	29440	29440					0.12309106250836521
SIRRAKKKKK	10	Unmodified	_SIRRAKKKKK_					0	0	0			REV__PDIA3|p.Q502Rfs*46|1|0.48|ENSG00000167004|chr15:43771204-43771204|C/-|frameshift_variant	REV__PDIA3|p.Q502Rfs*46|1|0.48|ENSG00000167004|chr15:43771204-43771204|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	415.0364074707031	3	414.954212	1241.84081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.307	1	10.307	9.8068	10.807	0								0	0	0	0.97116	1	3154	3154		0	0	1		+		30566	17402	19227	19332	29441	29441					0.2295612374157372
SIRRAKKKKK	10	Unmodified	_SIRRAKKKKK_					0	0	0			REV__PDIA3|p.Q502Rfs*46|1|0.48|ENSG00000167004|chr15:43771204-43771204|C/-|frameshift_variant	REV__PDIA3|p.Q502Rfs*46|1|0.48|ENSG00000167004|chr15:43771204-43771204|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	415.0365295410156	3	414.954212	1241.84081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.912	1	10.912	10.412	11.412	0								0	0	0	0.97116	1	3388	3388		0	0	1		+		30567	17402	19227	19332	29442	29442					0.2295612374157372
SIRRLIPRKL	10	Unmodified	_SIRRLIPRKL_					0	0	0			REV__CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant	REV__CCDC168|p.K6236Nfs*3|1|0.42|ENSG00000175820|chr13:102731989-102731989|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	626.4221801757812	2	626.422231	1250.82991	0.59162	0.0003706	-0.23753	-0.00014879	0.35409	0.00022181	626.4219891210168	58.59	0.25439	58.59	58.463	58.717	0					10	4	3	0	0	0	0.88076	1	22601	22601		3.2813	0	1	44617000	+		30568	10111	19228	19333	29443	29443					0.21452721367313643
SIRRVVALR	9	Unmodified	_SIRRVVALR_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MSMS	HCT116MG_D190212_S4	4	357.23614501953125	3	357.236608	1068.688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.318	1	56.011	55.511	56.511	-0.30626								0	0	0	0.77018	1	21109	21109		0.26902	0	1				30569	5819	19229	19334	29444	29444					0.15639928344967302
SIRVTQKS	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKS_					1	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q9H552;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	480.77716064453125	2	480.777274	959.539994	0.11751	5.6496E-05	0.045238	2.1749E-05	0.16275	7.8246E-05	480.7772839549515	23.601	0.2088	23.601	23.471	23.679	0					6	3	2	0	0	0	0.12153	1	8417	8417		90.135	30.061	1	9551800		+	30570	558	19230	19335	29445	29445					0.058605723004689025
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	417.9065246582031	3	417.906705	1250.69829	0.035724	1.4929E-05	-0.12657	-5.2895E-05	-0.090847	-3.7965E-05	417.90659487472607	24.071	0.20895	24.071	23.941	24.15	0					8	3	3	0	0	0	0.0018639	1	8610	8610		148.1	112.11	1	13144000		+	30571	558	19231	19336	29446	29446					0.08296446488884612
SIRVTQKSYKV	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYKV_					1	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;KRT8|p.R18Gfs*56|1|0.24|ENSG00000170421|chr12:52904930-52904930|G/-|frameshift_variant	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	450.9294738769531	3	450.92951	1349.7667	0.23068	0.00010402	-0.34373	-0.000155	-0.11305	-5.0977E-05	450.92933968014285	30.737	0.26011	30.737	30.555	30.815	0					10	4	3	0	0	0	0.069902	1	11289	11289		94.738	65.446	1	26622000		+	30572	558	19232	19337	29447	29447					0.1058069106873063
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	HCT116MG_D190212_S2	2	931.5090942382812	1	931.509488	930.502212	0.93165	0.00086784	-0.47603	-0.00044343	0.45562	0.00042441	931.5088192777744	50.444	0.41968	50.272	50.087	50.507	-0.1719					16	7	3	0	0	0	0.012168	1	19333	19333		108	22.725	1	107640000			30573	4205	19233	19338	29448	29448					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MSMS	HCT116MG_D190212_S2	2	466.2579345703125	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.46	1	50.288	49.788	50.788	-0.1719								0	0	0	0.023185	1	19338	19338		88.904	23.669	1				30574	4205	19233	19338	29449	29449					0.034180613149942474
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	HCT116MG_D190212_S1	1	495.29766845703125	2	495.297507	988.580462	0.22186	0.00010989	0.28691	0.00014211	0.50877	0.00025199	495.29741170768193	44.062	0.41748	44.062	43.833	44.25	0					24	7	4	0	0	0	0.0083298	1	16645	16645		158.2	29.27	1	362670000	+		30575	11461	19234	19339	29450	29450					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	HCT116MG_D190212_S1	1	989.587646484375	1	989.587738	988.580462	0.46159	0.00045678	-0.144	-0.0001425	0.31759	0.00031428	989.5872145718579	44.062	0.2053	44.062	43.936	44.141	0					6	3	2	0	0	0	0.018611	1	16668	16668		123.45	19.702	1	29211000	+		30576	11461	19234	19339	29451	29451					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	HCT116MG_D190212_S2	2	495.29736328125	2	495.297507	988.580462	0.28876	0.00014302	0.14745	7.3031E-05	0.43621	0.00021605	495.2974126643131	43.969	1.1864	43.891	43.04	44.227	-0.078373					52	22	4	0	0	0	0.010831	2	16666	16638;16666		144.35	34.927	1	826030000	+		30577	11461	19234	19339	29452;29453	29453					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	HCT116MG_D190212_S2	2	989.5885009765625	1	989.587738	988.580462	0.77721	0.00076912	-0.20239	-0.00020029	0.57482	0.00056883	989.587452503414	43.969	0.46231	43.891	43.71	44.173	-0.078373					20	8	3	0	0	0	0.015316	1	16677	16677		131.27	24.168	1	123860000	+		30578	11461	19234	19339	29454	29454					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	989.587738	988.580462	0.46159	0.00045678	-0.144	-0.0001425	0.31759	0.00031428	989.5872145718579	44.062	0.2053	44.062	43.936	44.141	0	0.085899	3.51E-05	NaN	131.27	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29211000	+		30579	11461	19234	19339							0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	495.297507	988.580462	0.22186	0.00010989	0.28691	0.00014211	0.50877	0.00025199	495.29741170768193	44.062	0.41748	44.062	43.833	44.25	0	0.080473	0.00018976	NaN	158.2	24	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362670000	+		30580	11461	19234	19339							0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	989.587738	988.580462	0.77721	0.00076912	-0.20239	-0.00020029	0.57482	0.00056883	989.587452503414	43.969	0.46231	43.891	43.71	44.173	-0.078373	-0.085899	-2.2685E-05	NaN	131.27	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123860000	+		30581	11461	19234	19339							0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	495.297507	988.580462	0.28876	0.00014302	0.14745	7.3031E-05	0.43621	0.00021605	495.2974126643131	43.969	1.1864	43.891	43.04	44.227	-0.078373	-0.091324	5.1607E-05	NaN	158.2	52	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	826030000	+		30582	11461	19234	19339							0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MATCH	HCT116MG_D190212_S3	3		2	495.297507	988.580462	0.47721	0.00023636	-0.022234	-1.1012E-05	0.45497	0.00022535	495.29743577510976	44.3	0.3111	43.993	43.864	44.175	-0.30759	0.010851	-0.00011648	NaN	158.2	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13459000	+		30583	11461	19234	19339							0.08571493900251426
SISKKTPV	8	Unmodified	_SISKKTPV_					0	0	0			REV__ENST00000509378.1_1_4:165110527-165110881:+|nuORF	REV__ENST00000509378.1_1_4:165110527-165110881:+|nuORF	MSMS	HCT116MG_D190212_S4	4	430.26446533203125	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.066	1	46.695	46.195	47.195	-0.37038								0	0	0	0.8837	1	17397	17397		2.8892	0	1		+		30584	16167	19235	19340	29455	29455					0.08254972902841473
SITDYTNYETN	11	Unmodified	_SITDYTNYETN_					0	0	0			REV__ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant	REV__ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	660.7803344726562	2	660.783147	1319.55174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.521	1	41.219	40.719	41.719	-0.30257								0	0	0	0.92235	1	15446	15446		17.113	4.8722	1		+		30585	13296	19236	19341	29456	29456					-0.09525320257534986
SITIPSDP	8	Unmodified	_SITIPSDP_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MSMS	HCT116MG_D190212_S4	4	415.21759033203125	2	415.218726	828.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.961	1	29.604	29.104	30.104	-0.3571								0	0	0	0.8837	1	10842	10842		13.508	3.3245	1		+		30586	12359	19237	19342	29457	29457					0.0018241436084736051
SITITARR	8	Unmodified	_SITITARR_					0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF;nc|nan|Q96M02-2|C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	MSMS	HCT116MG_D190212_S3	3	459.26873779296875	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.946	1	54.654	54.154	55.154	-0.2918								0	0	0	0.8837	1	20831	20831		8.5933	0	1				30587	4222	19238	19343	29458	29458					0.08380295882943756
SITKLEWNP	9	Unmodified	_SITKLEWNP_					0	0	0		ENSG00000136048|ENST00000258534|DRAM1	ENSG00000136048|ENST00000258534|DRAM1	ENSG00000136048|ENST00000258534|DRAM1	MULTI-SECPEP	HCT116MG_D190212_S1	1	544.7700805664062	2	544.292756	1086.57096	0.65084	0.00035425	-3.0454	-0.0016576	-2.3946	-0.0013033	544.2912123774288	20.514	0.2086	20.514	20.383	20.592	0					5	3	2	0	0	0	0.23301	1	7202	7202		6.7232	0.51738	1	2943100			30588	3391	19239	19344	29459	29459					0.031137256147076187
SITKSTELL	9	Unmodified	_SITKSTELL_					0	0	0		RICTOR|p.S1588I|1|0.09|ENSG00000164327|chr5:38944939-38944939|C/A|missense_variant	RICTOR|p.S1588I|1|0.09|ENSG00000164327|chr5:38944939-38944939|C/A|missense_variant	RICTOR|p.S1588I|1|0.09|ENSG00000164327|chr5:38944939-38944939|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	497.2668762207031	2	496.28714	990.559727	0.28723	0.00014255	0.79939	0.00039673	1.0866	0.00053927	496.2873429960572	57.512	0.15562	57.512	57.412	57.567	0					6	2	3	0	0	0	0.60612	1	22140	22140		10.824	0	1	6802600			30589	18108	19240	19345	29460	29460					0.0640690352056481
SITRLWRNNWI	11	Unmodified	_SITRLWRNNWI_					0	0	0			REV__nc|ENSG00000087460|Q5JWF2|GNAS	REV__nc|ENSG00000087460|Q5JWF2|GNAS	MSMS	HCT116MG_D190212_S3	3	729.9027709960938	2	729.90186	1457.78917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.327	1	51.015	50.515	51.515	-0.31166								0	0	0	0.95113	1	19377	19377		5.7319	0.43497	1		+		30590	17085	19241	19346	29461	29461					0.07858335257037652
SITRTIESPL	10	Unmodified	_SITRTIESPL_					0	0	0			REV__PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	REV__PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	558.8182373046875	2	558.816596	1115.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.079	1	55.772	55.272	56.272	-0.30626								0	0	0	0.90475	1	21013	21013		14.838	4.0143	1		+		30591	10749	19242	19347	29462	29462					0.06545379814906482
SITWSQADRE	10	Unmodified	_SITWSQADRE_					0	0	0			REV__EPB42|p.L487Pfs*13|1|0.39|ENSG00000166947|chr15:43206488-43206489|-/G|frameshift_variant	REV__EPB42|p.L487Pfs*13|1|0.39|ENSG00000166947|chr15:43206488-43206489|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	596.79736328125	2	596.783284	1191.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.954	1	29.597	29.097	30.097	-0.3571								0	0	0	0.89062	1	10839	10839		17.113	0	1		+		30592	13130	19243	19348	29463	29463					-0.03609855747026813
SIVCSRHELR	10	Unmodified	_SIVCSRHELR_					0	0	0		ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	MSMS	HCT116MG_D190212_S3	3	600.3028564453125	2	600.319314	1198.62407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.925	1	49.61	49.11	50.11	-0.31525								0	0	0	0.85631	1	18813	18813		21.537	8.4945	1				30593	5266	19244	19349	29464	29464					0.03270780125717465
SIVDQTPQ	8	Unmodified	_SIVDQTPQ_					0	0	0			REV__ENST00000583370.5_1_17:25877599-25885155:+|nuORF	REV__ENST00000583370.5_1_17:25877599-25885155:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	444.2452087402344	2	444.227082	886.439611	0.16012	7.1128E-05	0.097937	4.3506E-05	0.25805	0.00011463	444.22701061399357	20.852	0.83109	20.469	20.338	21.169	-0.38288					24	15	2	0	0	0	0.29402	1	7442	7442		16.942	3.4344	1	8614700	+		30594	16638	19245	19350	29465	29465					-0.008150847531851468
SIVKDTQP	8	Unmodified	_SIVKDTQP_					0	0	0			REV__SAGE1|p.I823Lfs*5|1|0.48|ENSG00000181433|chrX:135911895-135911895|G/-|frameshift_variant	REV__SAGE1|p.I823Lfs*5|1|0.48|ENSG00000181433|chrX:135911895-135911895|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	444.2452087402344	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.186	1	20.803	20.303	21.303	-0.38288								0	0	0	0.85589	1	7442	7442		18.135	2.2878	1		+		30595	13689	19246	19351	29466	29466					0.028217921435157223
SIVKGFSG	8	Unmodified	_SIVKGFSG_					0	0	0			REV__ENST00000534658.5_1_6:134494506-134495951:-|nuORF	REV__ENST00000534658.5_1_6:134494506-134495951:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	397.7243347167969	2	397.723978	793.433404	0.071185	2.8312E-05	0.25389	0.00010098	0.32508	0.00012929	397.72394156806064	26.308	0.41412	25.946	25.766	26.18	-0.36164					16	7	3	0	0	0	0.41924	1	9510	9510		48.346	1.425	1	102840000	+		30596	16333	19247	19352	29467	29467					0.028424418059557865
SIWEHSLLD	9	Unmodified	_SIWEHSLLD_					0	0	0		nc|ENSG00000108262|Q9Y2X7-2|GIT1;nc|ENSG00000139436|Q14161-8|GIT2;ENSG00000108262|ENST00000225394|GIT1;ENSG00000139436|ENST00000355312|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;GIT2|p.S699Vfs*8|1|0.06|ENSG00000139436|chr12:109933164-109933165|-/CAACAACT|frameshift_variant;nc|ENSG00000139436|Q14161-10|GIT2;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;GIT1|p.K620Rfs*49|1|0.1|ENSG00000108262|chr17:29575437-29575438|TT/-|frameshift_variant;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000108262|Q9Y2X7-3|GIT1	nc|ENSG00000108262|Q9Y2X7-2|GIT1	nc|ENSG00000108262|Q9Y2X7-2|GIT1	MSMS	HCT116MG_D190212_S4	4	367.1866455078125	3	367.185468	1098.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.94	1	42.565	42.065	43.065	-0.37493								0	0	0	0.76967	1	15801	15801		1.0715	0	1				30597	2152	19248	19353	29468	29468					-0.010751512819979325
SIWIFYRKL	9	Unmodified	_SIWIFYRKL_					0	0	0		ENST00000535340.5_1_11:18591643-18610207:-|nuORF	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	MSMS	HCT116MG_D190212_S2	2	613.585205078125	2	613.358234	1224.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.549	1	52.362	51.862	52.862	-0.18725								0	0	0	0.61599	1	20189	20189		23.148	1.6114	1				30598	8661	19249	19354	29469	29469					0.09855161053428674
SIWNNRWLRTI	11	Unmodified	_SIWNNRWLRTI_					0	0	0		nc|ENSG00000087460|Q5JWF2|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENSG00000087460|ENST00000371085|GNAS;GNAL|p.L333*|1|0.17|ENSG00000141404|chr18:11876683-11876683|T/-|frameshift_variant;ENSG00000141404|ENST00000334049|GNAL;nc|ENSG00000141404|P38405-3|GNAL;nc|ENSG00000141404|P38405|GNAL	nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|Q5JWF2|GNAS	MSMS	HCT116MG_D190212_S4	4	729.9036254882812	2	729.90186	1457.78917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.707	1	55.395	54.895	55.895	-0.312								0	0	0	0.95196	1	20866	20866		5.2969	0	1				30599	9394	19250	19355	29470	29470					0.07858335257014915
SIWRYFKP	8	Unmodified	_SIWRYFKP_					0	0	0			REV__nc|ENSG00000114127|Q8IZH2-3|XRN1	REV__nc|ENSG00000114127|Q8IZH2-3|XRN1	MSMS	HCT116MG_D190212_S4	4	366.2021179199219	3	366.202793	1095.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.152	1	40.775	40.275	41.275	-0.37732								0	0	0	0.8837	1	15124	15124		6.7232	0.53132	1		+		30600	11503	19251	19356	29471	29471					0.04258056922412834
SIYPSPTGV	9	Unmodified	_SIYPSPTGV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S1	1	920.4724731445312	1	920.472374	919.465098	0.70697	0.00065074	0.124	0.00011414	0.83096	0.00076488	920.4724645620327	40.047	0.62271	40.047	39.657	40.28	0					19	11	2	0	0	0	0.0035417	1	14988	14988		171.47	89.854	1	25328000			30601	5321	19252	19357	29472	29472					0.002143897692462815
SIYPSPTGV	9	Unmodified	_SIYPSPTGV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	HCT116MG_D190212_S2	2	920.472412109375	1	920.472374	919.465098	0.75836	0.00069805	0.050796	4.6756E-05	0.80916	0.00074481	920.4722365115273	40.082	0.72574	40.009	39.636	40.361	-0.072842					31	13	3	0	0	0	0.003294	1	15053	15053		180.01	98.397	1	74468000			30602	5321	19252	19357	29473	29473					0.002143897692462815
SKAALATK	8	Unmodified	_SKAALATK_					0	0	0		ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	MSMS	HCT116MG_D190212_S3	3	395.24676513671875	2	395.245078	788.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.246	1	62.015	61.515	62.515	-0.23129								0	0	0	0.8837	1	23775	23775		0.6015	0	1				30603	4803	19253	19358	29474	29474					0.07290417214335321
SKEQLTPLIK	10	Unmodified	_SKEQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S1	1	578.8502197265625	2	578.850438	1155.68632	0.49909	0.0002889	0.0093443	5.4089E-06	0.50843	0.0002943	578.8503429035231	34.154	0.52172	34.154	33.919	34.441	0					20	9	3	0	0	0	0.00040591	1	12647	12647		188.38	107.7	1	35272000			30604	4390	19254	19359	29475	29475					0.11470829745690025
SKEQLTPLIK	10	Unmodified	_SKEQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MSMS	HCT116MG_D190212_S1	1	386.2361145019531	3	386.236051	1155.68632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.174	1	34.174	33.674	34.674	0								0	0	0	0.10941	1	12671	12671		62.78	35.692	1				30605	4390	19254	19359	29476	29476					0.11470829745690025
SKEQLTPLIK	10	Unmodified	_SKEQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MSMS	HCT116MG_D190212_S2	2	578.8501586914062	2	578.850438	1155.68632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.408	1	34.233	33.733	34.733	-0.17512								0	0	0	0.1294	1	12800	12800		76.416	47.922	1				30606	4390	19254	19359	29477	29477					0.11470829745690025
SKEQLTPLIK	10	Unmodified	_SKEQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S3	3	578.8507080078125	2	578.850438	1155.68632	0.34911	0.00020208	-0.40285	-0.00023319	-0.053746	-3.1111E-05	578.8501615382199	34.498	0.46741	34.201	33.921	34.388	-0.29673					18	8	4	0	0	0	1.207E-08	1	12693	12693		216.43	108.87	1	28633000			30607	4390	19254	19359	29478	29478					0.11470829745690025
SKEQLTPLIK	10	Unmodified	_SKEQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MSMS	HCT116MG_D190212_S3	3	386.2359619140625	3	386.236051	1155.68632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.532	1	34.235	33.735	34.735	-0.29707								0	0	0	0.10941	1	12714	12714		62.78	35.692	1				30608	4390	19254	19359	29479	29479					0.11470829745690025
SKEQLTPLIK	10	Unmodified	_SKEQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S4	4	578.849609375	2	578.850438	1155.68632	0.20391	0.00011804	0.042267	2.4466E-05	0.24618	0.0001425	578.8503649295641	34.653	0.611	34.267	34.035	34.646	-0.38558					22	11	4	0	0	0	1.8932E-06	1	12658	12658		203.78	106.03	1	26307000			30609	4390	19254	19359	29480	29480					0.11470829745690025
SKEQLTPLIK	10	Unmodified	_SKEQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S4	4	386.2359619140625	3	386.236051	1155.68632	-0.038256	-1.4776E-05	-0.27073	-0.00010457	-0.30898	-0.00011934	386.23590136046494	34.685	0.25356	34.299	34.138	34.392	-0.38558					8	4	2	0	0	0	0.040924	1	12673	12673		74.306	46.125	1	6246300			30610	4390	19254	19359	29481	29481					0.11470829745690025
SKEQLTPLIK	10	Unmodified	_SKEQLTPLIK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MATCH	HCT116MG_D190212_S2	2		3	386.236051	1155.68632	0.12015	4.6405E-05	-0.42131	-0.00016272	-0.30116	-0.00011632	386.2358153817326	34.325	0.20769	34.15	34.02	34.227	-0.17512	-0.074659	-0.0001605	NaN	74.306	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6979800			30611	4390	19254	19359							0.11470829745690025
SKFDGTRLYES	11	Unmodified	_SKFDGTRLYES_					0	0	0		ENST00000602224.5_1_19:35823460-35823868:+|nuORF;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-4|CD22;CD22|p.L742Sfs*14|1|0.29|ENSG00000012124|chr19:35345612-35345612|C/-|frameshift_variant;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22	ENST00000602224.5_1_19:35823460-35823868:+|nuORF	ENST00000602224.5_1_19:35823460-35823868:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	652.32080078125	2	651.819867	1301.62518	0.75092	0.00048946	-0.14219	-9.2682E-05	0.60873	0.00039678	651.8197282099387	25.951	0.67737	25.823	25.338	26.016	-0.12795					19	12	2	0	0	0	0.72218	1	9266	9266		13.615	0	1	6381700			30612	371	19255	19360	29482	29482					-0.013567270243811436
SKFDGTRLYES	11	Unmodified	_SKFDGTRLYES_					0	0	0		ENST00000602224.5_1_19:35823460-35823868:+|nuORF;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-4|CD22;CD22|p.L742Sfs*14|1|0.29|ENSG00000012124|chr19:35345612-35345612|C/-|frameshift_variant;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22	ENST00000602224.5_1_19:35823460-35823868:+|nuORF	ENST00000602224.5_1_19:35823460-35823868:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	651.8199462890625	2	651.819867	1301.62518	0.57897	0.00037739	-0.56142	-0.00036594	0.017558	1.1445E-05	651.819677986712	26.024	0.83272	25.734	25.204	26.036	-0.29022					29	15	3	0	0	0	0.72218	1	9192	9192		13.615	0	1	3569400			30613	371	19255	19360	29483	29483					-0.013567270243811436
SKFDQLKAT	9	Unmodified	_SKFDQLKAT_					0	0	0			REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	518.7685546875	2	519.284931	1036.55531	0.48653	0.00025265	-0.73515	-0.00038175	-0.24862	-0.00012911	519.2844088488881	46.639	0.15545	46.639	46.543	46.699	0					4	2	2	0	0	0	0.26505	1	17721	17721		6.7232	0	1	6394000	+		30614	13710	19256	19361	29484	29484					0.03849439097643881
SKFKKLKSL	9	Unmodified	_SKFKKLKSL_					0	0	0		LRRC17|p.K424Nfs*12|1|0.42|ENSG00000128606|chr7:102944546-102944546|A/-|frameshift_variant;ENSG00000128606|ENST00000339431|LRRC17;LRRC17|p.K202Nfs*5|1|0.42|ENSG00000128606|chr7:102934514-102934514|A/-|frameshift_variant;LRRC17|p.L313*|1|0.16|ENSG00000128606|chr7:102944214-102944214|T/-|frameshift_variant;nc|ENSG00000128606|Q8N6Y2-2|LRRC17	LRRC17|p.K424Nfs*12|1|0.42|ENSG00000128606|chr7:102944546-102944546|A/-|frameshift_variant	LRRC17|p.K424Nfs*12|1|0.42|ENSG00000128606|chr7:102944546-102944546|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	360.23785400390625	3	360.237615	1077.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.052	1	55.745	55.245	56.245	-0.30693								0	0	0	0.76948	1	21003	21003		2.7352	0.82882	1				30615	3003	19257	19362	29485	29485					0.15527758679127146
SKKAKKKR	8	Unmodified	_SKKAKKKR_					0	0	0		CWF19L2|p.E92Kfs*45|1|0.28|ENSG00000152404|chr11:107454515-107454515|C/-|frameshift_variant	CWF19L2|p.E92Kfs*45|1|0.28|ENSG00000152404|chr11:107454515-107454515|C/-|frameshift_variant	CWF19L2|p.E92Kfs*45|1|0.28|ENSG00000152404|chr11:107454515-107454515|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	487.3353271484375	2	487.335093	972.655633	0.18058	8.8003E-05	0.47845	0.00023316	0.65903	0.00032117	487.3353510218051	58.403	0.35443	58.403	58.312	58.666	0					11	6	3	0	0	0	0.87685	1	22515	22515		0.6015	0	1	43497000			30616	620	19258	19363	29486	29486					0.16821140941988233
SKKKKKKGK	9	Unmodified	_SKKKKKKGK_					0	0	0		ENSG00000136045|ENST00000412830|PWP1;ENST00000563394.1_1_17:42300629-42300752:+|nuORF	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MSMS	HCT116MG_D190212_S1	1	353.9161682128906	3	353.916876	1058.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.014	1	2.014	1.514	2.514	0								0	0	0	0.77019	1	597	597		0.23584	0	1				30617	3390	19259	19364	29487	29487					0.20178269664597792
SKKKKKKGK	9	Unmodified	_SKKKKKKGK_					0	0	0		ENSG00000136045|ENST00000412830|PWP1;ENST00000563394.1_1_17:42300629-42300752:+|nuORF	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MSMS	HCT116MG_D190212_S1	1	353.916748046875	3	353.916876	1058.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.147	1	4.147	3.647	4.647	0								0	0	0	0.77019	1	1241	1241		0.23584	0	1				30618	3390	19259	19364	29488	29488					0.20178269664597792
SKKKKKKKALW	11	Unmodified	_SKKKKKKKALW_					0	0	0			REV__ENST00000265052.9_1_3:127410904-127410982:-|nuORF	REV__ENST00000265052.9_1_3:127410904-127410982:-|nuORF	MSMS	HCT116MG_D190212_S4	4	458.31158447265625	3	458.309885	1371.90782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.274	1	61.014	60.514	61.514	-0.2602								0	0	0	0.9619	1	23111	23111		0.094841	0.021578	1		+		30619	14670	19260	19365	29489	29489					0.23674734232690753
SKKKKKKKG	9	Unmodified	_SKKKKKKKG_					0	0	0			REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	MSMS	HCT116MG_D190212_S4	4	353.91717529296875	3	353.916876	1058.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.34674	1	0.082176	-0.41782	0.58218	-0.26456								0	0	0	0.77025	1	120	120		0	0	1		+		30620	13266	19261	19366	29490	29490					0.20178269664597792
SKKKKKKKKK	10	Unmodified	_SKKKKKKKKK_					0	0	0		MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;ENSG00000147649|ENST00000336273|MTDH;nc|ENSG00000089335|Q9NR11|ZNF302	MTDH|p.N505Ifs*18|1|0.48|ENSG00000147649|chr8:97719178-97719178|A/-|frameshift_variant;REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant;REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	REV__PHF20L1|p.E981Gfs*15|1|0.18|ENSG00000129292|chr8:132845806-132845807|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	420.3081970214844	3	420.306363	1257.89726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.413	1	28.413	27.913	28.913	0								0	0	0	0.97116	1	10348	10348		0	0	1				30621	11889;3995;15000	19262	19367	29491	29491					0.27862751578254574
SKKKKKLGAG	10	Unmodified	_SKKKKKLGAG_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MULTI-SECPEP	HCT116MG_D190212_S1	1	522.3550415039062	2	522.848033	1043.68151	0.28779	0.00015047	-0.13431	-7.0223E-05	0.15348	8.0249E-05	522.8479827727116	58.387	0.4048	58.387	58.211	58.615	0					14	7	3	0	0	0	0.31184	1	22506	22506		1.3295	1.3295	1	59321000			30622	1245	19263	19368	29492	29492					0.16141990393589367
SKKKKKVKVK	10	Unmodified	_SKKKKKVKVK_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MSMS	HCT116MG_D190212_S1	1	600.9293212890625	2	600.929357	1199.84416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.969	1	15.969	15.469	16.469	0								0	0	0	0.96453	1	5343	5343		1.4819	0	1				30623	4043	19264	19369	29493	29493					0.2522337379559758
SKKSSTKRI	9	Unmodified	_SKKSSTKRI_					0	0	0		CPT1C|p.T742Rfs*57|1|0.34|ENSG00000169169|chr19:49713058-49713058|A/-|frameshift_variant	CPT1C|p.T742Rfs*57|1|0.34|ENSG00000169169|chr19:49713058-49713058|A/-|frameshift_variant	CPT1C|p.T742Rfs*57|1|0.34|ENSG00000169169|chr19:49713058-49713058|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	517.8197021484375	2	517.819473	1033.62439	0.18264	9.4576E-05	-0.79201	-0.00041012	-0.60936	-0.00031554	517.8192966153164	50.218	0.5715	49.859	49.637	50.209	-0.35878					14	10	2	0	0	0	0.74917	1	18692	18692		1.8442	1.1539	1	3651900			30624	596	19265	19370	29494	29494					0.10892523117217934
SKLSSIIPSAF	11	Unmodified	_SKLSSIIPSAF_					0	0	0		ENSG00000165509|ENST00000298296|MAGEC3	ENSG00000165509|ENST00000298296|MAGEC3	ENSG00000165509|ENST00000298296|MAGEC3	MULTI-SECPEP	HCT116MG_D190212_S1	1	383.26385498046875	3	383.888651	1148.64412	-0.20403	-7.8324E-05	1.064	0.00040847	0.86001	0.00033015	383.88902600969766	49.601	0.36153	49.601	49.389	49.75	0					10	6	2	0	0	0	0.36616	1	18892	18892		1.4551	0.38366	1	11374000			30625	4780	19266	19371	29495	29495					0.07574854337326542
SKLYKIFEMR	10	Unmodified	_SKLYKIFEMR_					0	0	0			REV__nc|ENSG00000128581|Q9H7X7-3|IFT22	REV__nc|ENSG00000128581|Q9H7X7-3|IFT22	MSMS	HCT116MG_D190212_S1	1	438.86724853515625	3	438.912803	1313.71658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.752	1	10.752	10.252	11.252	0								0	0	0	0.97045	1	3323	3323		0.15932	0	1		+		30626	11877	19267	19372	29496	29496					0.07226865139227812
SKNELFFGSQK	11	Unmodified	_SKNELFFGSQK_					0	0	0			REV__OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	REV__OTOGL|p.C2147Mfs*2|1|0.4|ENSG00000165899|chr12:80367723-80367724|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.548	1	2.6033	2.1033	3.1033	0.055284								0	0	0	0.96121	1	771	771		0.45452	0	1		+		30627	13080	19268	19373	29497	29497					0.020521672179029338
SKPDILIILLQ	11	Unmodified	_SKPDILIILLQ_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MSMS	HCT116MG_D190212_S2	2	626.95556640625	2	626.897389	1251.78022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.124	1	43.05	42.55	43.55	-0.073376								0	0	0	0.95343	1	16342	16342		4.5289	1.7937	1				30628	2449	19269	19374	29498	29498					0.16440548848026992
SKRKRPTVL	9	Unmodified	_SKRKRPTVL_					0	0	0			REV__ENST00000493032.5_1_1:46714192-46726402:+|nuORF	REV__ENST00000493032.5_1_1:46714192-46726402:+|nuORF	MSMS	HCT116MG_D190212_S1	1	362.1598205566406	3	362.236497	1083.68766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.295	1	56.295	55.795	56.795	0								0	0	0	0.76998	1	21639	21639		0.96228	0	1		+		30629	10927	19270	19375	29499	29499					0.14916508625105962
SKRRAREKRRQ	11	Unmodified	_SKRRAREKRRQ_					0	0	0		ENSG00000182798|ENST00000400004|MAGEB17	ENSG00000182798|ENST00000400004|MAGEB17	ENSG00000182798|ENST00000400004|MAGEB17	MULTI-SECPEP	HCT116MG_D190212_S1	1	491.2046813964844	3	490.966063	1469.87636	0.41248	0.00020251	1.1993	0.00058881	1.6118	0.00079133	490.96682595903326	21.146	0.16105	21.146	21.012	21.173	0					4	2	2	0	0	0	0.36622	1	7408	7408		1.1098	0.6038	1	1693700			30630	5688	19271	19376	29500	29500					0.16021554251278758
SKRRKIFKKKL	11	Unmodified	_SKRRKIFKKKL_					0	0	0			REV__BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant	REV__BTBD7|p.P768Qfs*53|2|0.3|ENSG00000011114|chr14:93246105-93246105|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	716.4505615234375	2	716.485363	1430.95617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.993	1	59.74	59.24	60.24	-0.25285								0	0	0	0.96208	1	22861	22861		0	0	1		+		30631	10061	19272	19377	29501	29501					0.2579322787257752
SKRRPLRRKQ	10	Unmodified	_SKRRPLRRKQ_					0	0	0			REV__ENST00000332968.11_3_18:47010137-47015769:-|nuORF	REV__ENST00000332968.11_3_18:47010137-47015769:-|nuORF	MSMS	HCT116MG_D190212_S1	1	662.9242553710938	2	662.923461	1323.83237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.115	1	17.115	16.615	17.615	0								0	0	0	0.94339	1	5805	5805		6.2058	0.9089	1		+		30632	14938	19273	19378	29502	29502					0.183405698249544
SKRTSIRII	9	Unmodified	_SKRTSIRII_					0	0	0			REV__ENSG00000175707|ENST00000320567|KDF1	REV__ENSG00000175707|ENST00000320567|KDF1	MULTI-MSMS	HCT116MG_D190212_S2	2	358.56451416015625	3	358.564502	1072.67168	0.0963	3.453E-05	-0.19099	-6.8483E-05	-0.094691	-3.3953E-05	358.5644217631412	33.03	0.2077	32.819	32.688	32.896	-0.21135					7	3	3	0	0	0	0.50572	1	12268	12268		16.566	2.951	1	45646000	+		30633	13527	19274	19379	29503	29503					0.13824802388216995
SKSLERKLQ	9	Unmodified	_SKSLERKLQ_					0	0	0			REV__ENSG00000109424|ENST00000262999|UCP1	REV__ENSG00000109424|ENST00000262999|UCP1	MULTI-MSMS	HCT116MG_D190212_S1	1	545.3080444335938	2	544.824755	1087.63496	0.50068	0.00027278	0.46105	0.00025119	0.96173	0.00052397	544.8248374384925	52.099	0.67817	52.099	51.756	52.434	0					35	12	5	0	0	0	0.68648	1	19871	19871		6.2058	0	1	880500000	+		30634	11368	19275	19380	29504	29504					0.09464505771666154
SKSNRKRIN	9	Unmodified	_SKSNRKRIN_					0	0	0		ENST00000400755.3_1:142618829-142624070:+|nuORF	ENST00000400755.3_1:142618829-142624070:+|nuORF	ENST00000400755.3_1:142618829-142624070:+|nuORF	MSMS	HCT116MG_D190212_S4	4	368.2176818847656	3	368.219506	1101.63669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.962	1	37.579	37.079	38.079	-0.38283								0	0	0	0.76967	1	13898	13898		1.0715	0	1				30635	7695	19276	19381	29505	29505					0.08993559580267174
SKTRRPQSPLI	11	Unmodified	_SKTRRPQSPLI_					0	0	0			REV__nc|ENSG00000163697|Q92870-2|APBB2	REV__nc|ENSG00000163697|Q92870-2|APBB2	MULTI-MSMS	HCT116MG_D190212_S4	4	428.59197998046875	3	428.257849	1281.75172	0.21203	9.0802E-05	-1.1061	-0.0004737	-0.89408	-0.0003829	428.25727365338355	52.586	1.2982	52.246	51.679	52.978	-0.34023					39	24	2	0	0	0	0.74191	1	19784	19784		0.45452	0	1	3298900	+		30636	12944	19277	19382	29506	29506					0.12211243991418996
SKVKLKKTKK	10	Unmodified	_SKVKLKKTKK_					0	0	0		REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST;REST|p.S578Vfs*7|3|0.26|ENSG00000084093|chr4:56930584-56930584|A/-|frameshift_variant	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	594.4125366210938	2	594.41354	1186.81253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.08	1	59.827	59.327	60.327	-0.25233								0	0	0	0.96979	1	22896	22896		0.30703	0.30703	1				30637	1442	19278	19383	29507	29507					0.2265938104160341
SKVKLKKTKK	10	Unmodified	_SKVKLKKTKK_					0	0	0		REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST;REST|p.S578Vfs*7|3|0.26|ENSG00000084093|chr4:56930584-56930584|A/-|frameshift_variant	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	REST|p.P976Lfs*4|1|0.19|ENSG00000084093|chr4:56931781-56931781|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	594.4127807617188	2	594.41354	1186.81253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.689	1	60.443	59.943	60.943	-0.24588								0	0	0	0.9696	1	23145	23145		0.35063	0.35063	1				30638	1442	19278	19383	29508	29508					0.2265938104160341
SKVQSSKK	8	Unmodified	_SKVQSSKK_					0	0	0		CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant;nc|ENSG00000169607|Q8IYA6-3|CKAP2L;CKAP2L|p.T618Lfs*3|1|0.37|ENSG00000169607|chr2:112740978-112740978|T/-|frameshift_variant;ENSG00000169607|ENST00000302450|CKAP2L	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	CKAP2L|p.T478Pfs*15|1|0.25|ENSG00000169607|chr2:112752437-112752437|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	446.2661437988281	2	446.266542	890.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.381	1	21.381	20.881	21.881	0								0	0	0	0.8837	1	7518	7518		3.9444	1.8846	1				30639	468	19279	19384	29509	29509					0.06889187271758601
SKVRKSRS	8	Unmodified	_SKVRKSRS_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;EVC2|p.L1252Gfs*12|1|0.09|ENSG00000173040|chr4:5563020-5563021|AG/-|frameshift_variant;ENSG00000173040|ENST00000344408|EVC2;ENSG00000084731|ENST00000264712|KIF3C	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	HCT116MG_D190212_S2	2	474.46307373046875	2	474.290882	946.567212	0.38853	0.00018428	-0.042322	-2.0073E-05	0.34621	0.0001642	474.2907588679433	44.573	2.0745	44.488	43.447	45.521	-0.084797					72	39	3	0	0	0	0.8672	1	16913	16913		2.3027	2.3027	1	43162000			30640	5268	19280	19385	29510	29510					0.09179100631513393
SKVRLARI	8	Unmodified	_SKVRLARI_					0	0	0		ENST00000587327.5_1_19:11546705-11546834:+|nuORF	ENST00000587327.5_1_19:11546705-11546834:+|nuORF	ENST00000587327.5_1_19:11546705-11546834:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	471.8139953613281	2	471.813993	941.613434	0.1449	6.8364E-05	-0.4246	-0.00020033	-0.27971	-0.00013197	471.8136606352055	58.184	0.27766	58.184	58.085	58.362	0					11	5	3	0	0	0	0.86858	1	22424	22424		2.0598	0	1	76770000			30641	9006	19281	19386	29511	29511					0.14029165533600008
SLADDSVLERL	11	Unmodified	_SLADDSVLERL_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	609.329833984375	2	609.322242	1216.62993	0.34409	0.00020966	-0.60201	-0.00036682	-0.25791	-0.00015715	609.3219275996103	51.22	0.15451	51.22	51.143	51.297	0					4	2	2	0	0	0	0.3197	1	19534	19534		42.835	16.567	1	51196000			30642	2330	19282	19387	29512	29512					0.03028157118387753
SLADDSVLERL	11	Unmodified	_SLADDSVLERL_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	609.322242	1216.62993	0.5587	0.00034043	-0.94587	-0.00057634	-0.38717	-0.00023591	609.3216134662582	51.463	0.30956	51.281	51.116	51.426	-0.18208	0.030178	-3.2989E-05	NaN	30.431	14	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95343000			30643	2330	19282	19387							0.03028157118387753
SLADIAQKL	9	Unmodified	_SLADIAQKL_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000485835.1_1_17:38151035-38151804:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	HCT116MG_D190212_S1	1	479.7821350097656	2	479.782025	957.549496	-0.0070697	-3.3919E-06	0.22058	0.00010583	0.21351	0.00010244	479.7820182273368	48.537	0.25753	48.537	48.408	48.666	0					6	4	2	0	0	0	0.069315	1	18505	18505		65.235	12.967	1	10285000			30644	2155	19283	19388	29513	29513					0.06902340586009359
SLADIAQKL	9	Unmodified	_SLADIAQKL_					0	0	0		ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000485835.1_1_17:38151035-38151804:+|nuORF	ENSG00000108344|ENST00000264639|PSMD3	ENSG00000108344|ENST00000264639|PSMD3	MULTI-MATCH	HCT116MG_D190212_S2	2		2	479.782025	957.549496	0.33861	0.00016246	-0.027402	-1.3147E-05	0.31121	0.00014931	479.78202295515166	48.69	0.20264	48.546	48.388	48.591	-0.1437	0.0045454	-5.7854E-05	NaN	65.235	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20427000			30645	2155	19283	19388							0.06902340586009359
SLADLNSRL	9	Unmodified	_SLADLNSRL_					0	0	0		nc|ENSG00000186205|Q5VT66-3|MTARC1;ENSG00000186205|ENST00000366910|MTARC1;nc|ENSG00000186205|Q5VT66-2|MTARC1	nc|ENSG00000186205|Q5VT66-3|MTARC1	nc|ENSG00000186205|Q5VT66-3|MTARC1	MULTI-MSMS	HCT116MG_D190212_S1	1	494.7750244140625	2	494.774731	987.534909	0.60354	0.00029862	-0.19643	-9.719E-05	0.4071	0.00020143	494.77453295263274	41.784	0.20788	41.784	41.654	41.862	0					5	3	2	0	0	0	0.12421	1	15765	15765		53.404	7.3831	1	12127000			30646	5873	19284	19389	29514	29514					0.04064268437866758
SLADLNSRL	9	Unmodified	_SLADLNSRL_					0	0	0		nc|ENSG00000186205|Q5VT66-3|MTARC1;ENSG00000186205|ENST00000366910|MTARC1;nc|ENSG00000186205|Q5VT66-2|MTARC1	nc|ENSG00000186205|Q5VT66-3|MTARC1	nc|ENSG00000186205|Q5VT66-3|MTARC1	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7747802734375	2	494.774731	987.534909	0.45863	0.00022692	-0.20651	-0.00010217	0.25213	0.00012475	494.77459636279065	41.747	0.31017	41.679	41.498	41.808	-0.068199					9	5	2	0	0	0	0.037825	1	15786	15786		80.676	19.319	1	43916000			30647	5873	19284	19389	29515	29515					0.04064268437866758
SLADLQNDEV	10	Unmodified	_SLADLQNDEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	HCT116MG_D190212_S2	2	552.2655639648438	2	552.264393	1102.51423	0.46852	0.00025875	-0.36169	-0.00019975	0.10683	5.8997E-05	552.2641407918836	41.799	0.51678	41.731	41.396	41.913	-0.068199					12	9	2	0	0	0	0.0092896	1	15812	15812		152.89	85.048	1	27749000			30648	3910	19285	19390	29516	29516					-0.032923667324666894
SLADLQNDEV	10	Unmodified	_SLADLQNDEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	HCT116MG_D190212_S3	3	552.7665405273438	2	552.264393	1102.51423	0.37413	0.00020662	0.38461	0.00021241	0.75874	0.00041903	552.2646089499094	42.005	0.36391	41.703	41.52	41.884	-0.30257					13	6	3	0	0	0	0.017735	1	15642	15642		125.53	72.125	1	17905000			30649	3910	19285	19390	29517	29517					-0.032923667324666894
SLADLQNDEV	10	Unmodified	_SLADLQNDEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	HCT116MG_D190212_S4	4	552.2647705078125	2	552.264393	1102.51423	0.509	0.0002811	0.079134	4.3703E-05	0.58814	0.00032481	552.2644616284135	42.021	0.25633	41.645	41.53	41.786	-0.37637					7	4	2	0	0	0	0.052106	1	15445	15445		85.642	32.238	1	3526700			30650	3910	19285	19390	29518	29518					-0.032923667324666894
SLADSLQSL	9	Unmodified	_SLADSLQSL_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	933.4876098632812	1	933.488753	932.481476	0.77832	0.00072655	-0.41998	-0.00039204	0.35835	0.00033451	933.487967799896	51.323	0.20583	51.323	51.194	51.4	0					5	3	2	0	0	0	0.0066233	1	19608	19608		123.45	23.079	1	26461000			30651	175	19286	19391	29519	29519					0.01253470935353107
SLADSLQSL	9	Unmodified	_SLADSLQSL_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	933.4890747070312	1	933.488753	932.481476	0.78214	0.00073012	-0.03879	-3.621E-05	0.74335	0.00069391	933.4888190765746	51.579	0.51408	51.396	51.166	51.68	-0.18369					16	9	3	0	0	0	0.0062667	1	19795	19795		126.57	10.874	1	113180000			30652	175	19286	19391	29520	29520					0.01253470935353107
SLADSLQSL	9	Unmodified	_SLADSLQSL_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	467.2479248046875	2	467.248015	932.481476	0.22307	0.00010423	-0.091419	-4.2715E-05	0.13166	6.1516E-05	467.24788926742116	51.59	0.25667	51.406	51.27	51.527	-0.18369					8	4	3	0	0	0	0.031089	1	19825	19825		85.272	10.343	1	15446000			30653	175	19286	19391	29521	29521					0.01253470935353107
SLADSLQSL	9	Unmodified	_SLADSLQSL_					0	0	0		ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant;ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	ARHGAP29|p.K679Rfs*35|1|0.28|ENSG00000137962|chr1:94184945-94184945|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		1	933.488753	932.481476	0.77746	0.00072575	0.57186	0.00053382	1.3493	0.0012596	933.489601522893	51.667	0.26167	51.356	51.225	51.486	-0.31166	-0.0024775	0.00046297	NaN	126.57	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2345900			30654	175	19286	19391							0.01253470935353107
SLADVDPMQL	10	Unmodified	_SLADVDPMQL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ATAD2|p.P460Qfs*32|1|0.42|ENSG00000156802|chr8:123359224-123359224|G/-|frameshift_variant;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1088.5301513671875	1	1088.52924	1087.52196	0.56482	0.00061482	-0.036145	-3.9345E-05	0.52867	0.00057548	1088.5290889696116	54.614	0.2039	54.424	54.303	54.507	-0.1894					8	3	3	0	0	0	0.0045361	1	21041	21041		168.66	103.42	1	25990000			30655	8543	19287	19392	29522	29522					-0.01829930736539609
SLADVHIEV	9	Unmodified	_SLADVHIEV_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	HCT116MG_D190212_S1	1	491.7640075683594	2	491.763832	981.513111	0.39988	0.00019665	0.49627	0.00024405	0.89615	0.00044069	491.76403381741653	46.933	0.25902	46.933	46.803	47.062	0					10	4	3	0	0	0	0.055677	1	17831	17831		71.922	25.901	1	34887000			30656	1609	19288	19393	29523	29523					0.02161463689287757
SLADVHIEV	9	Unmodified	_SLADVHIEV_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MSMS	HCT116MG_D190212_S2	2	491.7639465332031	2	491.763832	981.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.075	1	46.953	46.453	47.453	-0.12175								0	0	0	0.034673	1	17948	17948		78.149	20.678	1				30657	1609	19288	19393	29524	29524					0.02161463689287757
SLADVIIHEI	10	Unmodified	_SLADVIIHEI_					0	0	0		ENST00000471105.5_1_1:201965436-201974841:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	555.3139038085938	2	555.313689	1108.61282	0.4218	0.00023423	-0.058056	-3.2239E-05	0.36375	0.00020199	555.313616345102	56.994	0.20697	56.994	56.893	57.1	0					8	3	3	0	0	0	0.023158	1	21937	21937		114.65	55.97	1	26962000			30658	5417	19289	19394	29525	29525					0.062862813032325
SLADVIIHEI	10	Unmodified	_SLADVIIHEI_					0	0	0		ENST00000471105.5_1_1:201965436-201974841:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	555.3139038085938	2	555.313689	1108.61282	0.41195	0.00022876	0.038483	2.137E-05	0.45044	0.00025013	555.3136836786362	57.204	0.20802	57.025	56.895	57.103	-0.17904					8	3	3	0	0	0	0.35357	1	22105	22105		45.7	21.679	1	72202000			30659	5417	19289	19394	29526	29526					0.062862813032325
SLAEEHEGL	9	Unmodified	_SLAEEHEGL_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	493.26043701171875	2	492.735271	983.45599	0.013431	6.6181E-06	0.023756	1.1706E-05	0.037188	1.8324E-05	492.73520035773896	30.483	0.30701	30.199	30.028	30.335	-0.28453					8	5	2	0	0	0	0.17767	1	11247	11247		32.305	0	1	39211000			30660	594	19290	19395	29527	29527					-0.0364000358707699
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2720031738281	2	473.271824	944.529095	0.026942	1.2751E-05	0.37787	0.00017883	0.40481	0.00019158	473.271855388309	37.82	0.25745	37.727	37.548	37.805	-0.09301					9	4	3	0	0	0	0.031831	1	14197	14197		84.522	2.632	1	43105000			30661	2288	19291	19396	29528	29528					0.05461169926184084
SLAEKIQAL	9	Unmodified	_SLAEKIQAL_					0	0	0		ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	MULTI-MSMS	HCT116MG_D190212_S1	1	486.79034423828125	2	486.78985	971.565146	0.17059	8.3043E-05	0.40971	0.00019944	0.58031	0.00028249	486.7899740710075	42.977	0.20818	42.977	42.847	43.056	0					6	3	2	0	0	0	0.0034865	1	16233	16233		165.72	35.948	1	25771000			30662	4014	19292	19397	29529	29529					0.07822627103041668
SLAEKIQAL	9	Unmodified	_SLAEKIQAL_					0	0	0		ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	MSMS	HCT116MG_D190212_S2	2	486.7899475097656	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.991	1	42.921	42.421	43.421	-0.070007								0	0	0	0.014652	1	16288	16288		99.755	3.3887	1				30663	4014	19292	19397	29530	29530					0.07822627103041668
SLAEKKVKR	9	Unmodified	_SLAEKKVKR_					0	0	0			REV__nc|ENSG00000188107|Q5T1H1|EYS	REV__nc|ENSG00000188107|Q5T1H1|EYS	MULTI-SECPEP	HCT116MG_D190212_S1	1	530.353759765625	2	529.837665	1057.66078	0.22225	0.00011776	1.2287	0.00065103	1.451	0.00076879	529.837994128795	58.5	0.25364	58.5	58.413	58.666	0					6	4	2	0	0	0	0.26961	1	22542	22542		0.45834	0	1	15078000	+		30664	17254	19293	19398	29531	29531					0.13425400013943545
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	HCT116MG_D190212_S2	2	469.76898193359375	2	469.768917	937.523281	0.28186	0.00013241	0.38801	0.00018227	0.66987	0.00031468	469.76891005830424	50.637	0.36251	50.465	50.351	50.713	-0.17191					11	6	3	0	0	0	0.013464	1	19425	19425		104.8	44.41	1	38626000			30665	1394	19294	19399	29532	29532					0.0520207141452147
SLAEPRVSV	9	Unmodified	_SLAEPRVSV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S1	1	479.2720031738281	2	479.271824	956.529095	0.28513	0.00013666	0.20023	9.5962E-05	0.48536	0.00023262	479.27180956161646	35.74	0.46782	35.74	35.578	36.046	0					14	8	3	0	0	0	0.095731	1	13320	13320		59.052	11.304	1	13051000			30666	5087	19295	19400	29533	29533					0.04909169926202139
SLAEPRVSV	9	Unmodified	_SLAEPRVSV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2718811035156	2	479.271824	956.529095	0.52032	0.00024937	-0.3997	-0.00019156	0.12062	5.781E-05	479.27166921435264	35.811	0.56718	35.669	35.489	36.056	-0.14245					15	10	3	0	0	0	0.031831	1	13377	13377		84.522	31.118	1	72863000			30667	5087	19295	19400	29534	29534					0.04909169926202139
SLAETDKITL	10	Unmodified	_SLAETDKITL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	HCT116MG_D190212_S1	1	545.8028564453125	2	545.803154	1089.59175	0.39756	0.00021699	-0.30584	-0.00016693	0.091726	5.0064E-05	545.8029422001331	42.874	0.26056	42.874	42.743	43.003	0					9	4	3	0	0	0	0.014951	1	16201	16201		132.13	49.605	1	31781000			30668	2426	19296	19401	29535	29535					0.05054271203721328
SLAETDKITL	10	Unmodified	_SLAETDKITL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	HCT116MG_D190212_S2	2	545.8038940429688	2	545.803154	1089.59175	0.55586	0.00030339	0.10606	5.7887E-05	0.66191	0.00036128	545.803295511506	42.873	0.3087	42.803	42.637	42.946	-0.069981					11	5	3	0	0	0	0.011036	1	16250	16250		143.21	60.684	1	59760000			30669	2426	19296	19401	29536	29536					0.05054271203721328
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-MSMS	HCT116MG_D190212_S1	1	1000.5676879882812	1	1000.56734	999.560061	0.67608	0.00067646	-0.83923	-0.00083971	-0.16315	-0.00016324	1000.5669664090689	57.288	0.25993	57.288	57.204	57.464	0					10	4	3	0	0	0	0.0054498	1	22061	22061		133.7	40.88	1	28351000			30670	1010	19297	19402	29537	29537					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-MSMS	HCT116MG_D190212_S1	1	500.787353515625	2	500.787307	999.560061	0.32221	0.00016136	-0.10629	-5.3227E-05	0.21592	0.00010813	500.78722389709645	57.282	0.20791	57.282	57.204	57.412	0					5	3	2	0	0	0	0.042978	1	22064	22064		78.149	16.792	1	22334000			30671	1010	19297	19402	29538	29538					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7874450683594	2	500.787307	999.560061	0.49183	0.0002463	0.31553	0.00015801	0.80735	0.00040431	500.7873352958828	57.516	0.3105	57.341	57.211	57.521	-0.17494					10	5	3	0	0	0	0.023611	1	22233	22233		92.822	18.399	1	57718000			30672	1010	19297	19402	29539	29539					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF;RETSAT|p.G295Vfs*12|1|0.2|ENSG00000042445|chr2:85349497-85349497|C/-|frameshift_variant	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MULTI-MSMS	HCT116MG_D190212_S2	2	1000.5680541992188	1	1000.56734	999.560061	0.59529	0.00059563	-1.0874	-0.001088	-0.49212	-0.0004924	1000.5673907214775	57.546	0.25875	57.371	57.211	57.469	-0.17494					12	4	4	0	0	0	0.049545	1	22237	22237		74.929	22.661	1	33535000			30673	1010	19297	19402	29540	29540					0.06026323240439524
SLAGDVALQQL	11	Unmodified	_SLAGDVALQQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MSMS	HCT116MG_D190212_S1	1	557.6893310546875	2	557.808771	1113.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.595	1	50.595	50.095	51.095	0								0	0	0	0.49457	1	19310	19310		47.749	23.728	1				30674	878	19298	19403	29541	29541					0.05073093297869491
SLAGDVALQQL	11	Unmodified	_SLAGDVALQQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MSMS	HCT116MG_D190212_S1	1	557.8088989257812	2	557.808771	1113.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.723	1	50.723	50.223	51.223	0								0	0	0	1.0794E-16	1	19361	19361		184.36	91.19	1				30675	878	19298	19403	29542	29542					0.05073093297869491
SLAGDVALQQL	11	Unmodified	_SLAGDVALQQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	HCT116MG_D190212_S2	2	557.80908203125	2	557.808771	1113.60299	0.34814	0.00019419	-0.17978	-0.00010028	0.16836	9.3913E-05	557.8086579403007	50.945	0.46526	50.767	50.604	51.069	-0.17869					23	8	4	0	0	0	3.2185E-05	1	19524	19524		163.69	71.033	1	241390000			30676	878	19298	19403	29543	29543					0.05073093297869491
SLAGDVALQQL	11	Unmodified	_SLAGDVALQQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	HCT116MG_D190212_S2	2	1114.609375	1	1114.61026	1113.60299	0.52951	0.0005902	-0.94179	-0.0010497	-0.41228	-0.00045953	1114.6087447115742	50.937	0.31007	50.758	50.604	50.914	-0.17868					11	5	3	0	0	0	0.0023679	1	19540	19540		149.91	57.261	1	30100000			30677	878	19298	19403	29544	29544					0.05073093297869491
SLAGDVALQQL	11	Unmodified	_SLAGDVALQQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	557.808771	1113.60299	0.36496	0.00020358	-0.40256	-0.00022455	-0.0376	-2.0974E-05	557.8084439588031	51.143	0.20921	50.831	50.7	50.91	-0.31166	0.032232	-0.00024423	NaN	163.69	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3218000			30678	878	19298	19403							0.05073093297869491
SLAGGIIGV	9	Unmodified	_SLAGGIIGV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	HCT116MG_D190212_S1	1	786.4722900390625	1	786.47198	785.464704	0.85659	0.00067368	0.013662	1.0745E-05	0.87025	0.00068443	786.471821654921	52.353	0.36032	52.353	52.125	52.485	0					17	6	4	0	0	0	0.014796	1	20003	20003		101.72	12.818	1	322750000			30679	9530	19299	19404	29545	29545					0.0633901484004582
SLAGGIIGV	9	Unmodified	_SLAGGIIGV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	HCT116MG_D190212_S2	2	786.472412109375	1	786.47198	785.464704	1.0437	0.00082087	-0.16343	-0.00012853	0.88031	0.00069234	786.4717421827106	52.508	0.92972	52.321	52.09	53.02	-0.18725					47	17	5	0	0	0	0.0059651	2	20141	20141;20395		129.2	21.203	1	1261200000			30680	9530	19299	19404	29546;29547	29546					0.0633901484004582
SLAGGIIGV	9	Unmodified	_SLAGGIIGV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	HCT116MG_D190212_S3	3	786.4725341796875	1	786.47198	785.464704	0.80265	0.00063126	0.016673	1.3113E-05	0.81932	0.00064438	786.4718065222993	52.789	0.62736	52.483	52.247	52.875	-0.30639					26	11	3	0	0	0	0.0059651	1	19944	19944		129.2	21.203	1	69464000			30681	9530	19299	19404	29548	29548					0.0633901484004582
SLAGGIIGV	9	Unmodified	_SLAGGIIGV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;ENST00000485383.1_1_3:96068520-96068997:+|nuORF;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	HCT116MG_D190212_S4	4	787.2633666992188	1	786.47198	785.464704	0.91072	0.00071625	-0.071725	-5.641E-05	0.83899	0.00065984	786.47183386183	52.824	0.41573	52.483	52.301	52.717	-0.34023					14	7	3	0	0	0	0.0066639	2	19722	19692;19722		123.1	8.1524	1	12464000			30682	9530	19299	19404	29549;29550	29550					0.0633901484004582
SLAHELWKV	9	Unmodified	_SLAHELWKV_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-2|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MULTI-MSMS	HCT116MG_D190212_S2	2	541.803466796875	2	541.803291	1081.59203	0.28526	0.00015456	0.39159	0.00021216	0.67685	0.00036672	541.8030817883993	44.113	0.25616	44.035	43.865	44.121	-0.078369					10	4	3	0	0	0	0.049866	1	16755	16755		90.135	54.008	1	33748000			30683	1548	19300	19405	29551	29551					0.054497357142281544
SLAHELWKV	9	Unmodified	_SLAHELWKV_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-2|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MSMS	HCT116MG_D190212_S2	2	361.53778076171875	3	361.537953	1081.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.221	1	44.143	43.643	44.643	-0.078373								0	0	0	0.76737	1	16790	16790		10.151	1.1743	1				30684	1548	19300	19405	29552	29552					0.054497357142281544
SLAHGASL	8	Unmodified	_SLAHGASL_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MULTI-SECPEP	HCT116MG_D190212_S2	2	378.68353271484375	2	378.205953	754.397353	0.046718	1.7669E-05	-0.028628	-1.0827E-05	0.018091	6.8419E-06	378.2058330561312	27.507	0.20629	27.165	27.037	27.243	-0.34201					5	3	2	0	0	0	0.24939	1	9986	9986		23.148	3.7094	1	4316000			30685	4375	19301	19406	29553	29553					0.010329846291028844
SLALMAAPFRP	11	Unmodified	_SLALMAAPFRP_					0	0	0		ENST00000602596.1_1_16:67515375-67518232:+|nuORF	ENST00000602596.1_1_16:67515375-67518232:+|nuORF	ENST00000602596.1_1_16:67515375-67518232:+|nuORF	MSMS	HCT116MG_D190212_S2	2	587.327880859375	2	587.326076	1172.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.113	1	41.045	40.545	41.545	-0.068199								0	0	0	0.94755	1	15524	15524		7.609	0.88579	1				30686	9097	19302	19407	29554	29554					0.05818637904962998
SLALRKTM	8	Unmodified	_SLALRKTM_					0	0	0			REV__KCNC1|p.K458Efs*16|1|0.28|ENSG00000129159|chr11:17772456-17772457|-/A|frameshift_variant	REV__KCNC1|p.K458Efs*16|1|0.28|ENSG00000129159|chr11:17772456-17772457|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	460.2752990722656	2	460.273312	918.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.812	1	32.601	32.101	33.101	-0.21135								0	0	0	0.8837	1	12153	12153		9.3474	0	1		+		30687	11887	19303	19408	29555	29555					0.06954721779356987
SLALRTLHL	9	Unmodified	_SLALRTLHL_					0	0	0			REV__ENSG00000142871|ENST00000451137|CCN1	REV__ENSG00000142871|ENST00000451137|CCN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	512.2861328125	2	512.319109	1022.62366	0.5178	0.00026528	0.40462	0.00020729	0.92242	0.00047257	512.3192900031306	44.699	0.2095	44.614	44.482	44.691	-0.084797					6	3	2	0	0	0	0.2458	1	16935	16935		13.042	2.2185	1	15098000	+		30688	12369	19304	19409	29556	29556					0.11325728468182206
SLANNVTSV	9	Unmodified	_SLANNVTSV_					0	0	0		DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant;ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	452.7399597167969	2	452.740357	903.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.459	1	35.317	34.817	35.817	-0.14245								0	0	0	0.054343	1	13227	13227		69.105	19.172	1				30689	647	19305	19410	29557	29557					0.010566041381594005
SLAQELEGAF	10	Unmodified	_SLAQELEGAF_					0	0	0			REV__nc|ENSG00000273756|P0DX02|GOLGA6L26	REV__nc|ENSG00000273756|P0DX02|GOLGA6L26	MULTI-MSMS	HCT116MG_D190212_S2	2	532.7664794921875	2	532.766571	1063.51859	0.30026	0.00015997	-0.0010374	-5.5267E-07	0.29922	0.00015941	532.7665149482422	38.233	0.25893	38.14	37.96	38.219	-0.09301					9	4	3	0	0	0	0.50387	1	14363	14363		34.932	0.53034	1	26411000	+		30690	14450	19306	19411	29558	29558					-0.010628575189002731
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1020.57275390625	1	1020.57242	1019.56515	0.83381	0.00085096	-0.31408	-0.00032054	0.51973	0.00053042	1020.5718892200417	56.867	0.20809	56.867	56.737	56.945	0					7	3	3	0	0	0	0.035349	1	21895	21895		81.89	23.211	1	69960000			30691	6119	19307	19412	29559	29559					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	510.7900085449219	2	510.78985	1019.56515	0.34903	0.00017828	0.25295	0.0001292	0.60198	0.00030748	510.78996370684615	56.867	0.15608	56.867	56.789	56.945	0					4	2	2	0	0	0	0.31596	1	21896	21896		29.082	8.628	1	42144000			30692	6119	19307	19412	29560	29560					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1020.5726928710938	1	1020.57242	1019.56515	0.84184	0.00085916	-0.11075	-0.00011303	0.73108	0.00074612	1020.5721307074942	57.048	0.31179	56.869	56.739	57.051	-0.17904					15	5	4	0	0	0	0.0057285	1	22031	22031		131.27	60.134	1	224150000			30693	6119	19307	19412	29561	29561					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	510.78997802734375	2	510.78985	1019.56515	0.38653	0.00019743	0.074738	3.8175E-05	0.46126	0.00023561	510.789776924781	57.048	0.25954	56.869	56.739	56.999	-0.17904					13	4	4	0	0	0	0.027442	1	22042	22042		88.954	36.686	1	186950000			30694	6119	19307	19412	29562	29562					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	510.7897644042969	2	510.78985	1019.56515	0.34455	0.00017599	0.087364	4.4625E-05	0.43191	0.00022062	510.7896208193618	57.138	0.15639	56.859	56.781	56.937	-0.27913					4	2	2	0	0	0	0.39784	1	21736	21736		22.736	11.096	1	2488600			30695	6119	19307	19412	29563	29563					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	ENST00000547048.5_1_12:53862529-53873223:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1020.5725708007812	1	1020.57242	1019.56515	0.81034	0.00082701	-0.39731	-0.00040548	0.41303	0.00042153	1020.571957139674	57.138	0.20865	56.859	56.781	56.99	-0.27913					5	3	2	0	0	0	0.063511	1	21737	21737		68.081	39.594	1	1801900			30696	6119	19307	19412	29564	29564					0.056146271030456774
SLARKHGP	8	Unmodified	_SLARKHGP_					0	0	0			REV__ASAP1|p.T837A|1|0.32|ENSG00000153317|chr8:130092036-130092036|T/C|missense_variant	REV__ASAP1|p.T837A|1|0.32|ENSG00000153317|chr8:130092036-130092036|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	433.2546691894531	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.879	1	34.493	33.993	34.993	-0.38606								0	0	0	0.8837	1	12753	12753		2.5775	0	1		+		30697	9990	19308	19413	29565	29565					0.05531757539995397
SLASDPHEL	9	Unmodified	_SLASDPHEL_					0	0	0		nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11;ENSG00000019485|ENST00000683152|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	nc|ENSG00000019485|Q9NQV5-2|PRDM11	MULTI-SECPEP	HCT116MG_D190212_S1	1	484.74896240234375	2	484.737814	967.461075	-0.66637	-0.00032302	0.39818	0.00019301	-0.2682	-0.00013001	484.73815207543635	38.253	0.26055	38.253	38.071	38.332	0					6	4	2	0	0	0	0.23301	1	14342	14342		15.847	0	1	6121000			30698	938	19309	19414	29566	29566					-0.023956997244795275
SLASGLKSMVP	11	Unmodified	_SLASGLKSMVP_					0	0	0		ENSG00000235711|ENST00000421388|ANKRD34C	ENSG00000235711|ENST00000421388|ANKRD34C	ENSG00000235711|ENST00000421388|ANKRD34C	MSMS	HCT116MG_D190212_S1	1	545.3040771484375	2	545.302267	1088.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.02	1	34.02	33.52	34.52	0								0	0	0	0.93717	1	12609	12609		13.042	2.2185	1				30699	6526	19310	19415	29567	29567					0.04922938914137376
SLATAAAAAAA	11	Unmodified	_SLATAAAAAAA_					0	0	0		KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant;KDM6A|p.N634Tfs*57|1|0.26|ENSG00000147050|chrX:45063791-45063791|A/-|frameshift_variant;KDM6A|p.N906Mfs*31|1|0.53|ENSG00000147050|chrX:45076707-45076707|A/-|frameshift_variant;KDM6A|p.T1081Pfs*2|1|0.15|ENSG00000147050|chrX:45082743-45082743|A/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A;ENSG00000147050|ENST00000611820|KDM6A	KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant	KDM6A|p.S456Vfs*29|1|0.53|ENSG00000147050|chrX:45061358-45061359|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	444.2510070800781	2	444.742899	887.471246	0.44196	0.00019656	0.49253	0.00021905	0.93449	0.00041561	444.74296505836145	36.187	0.20673	36.059	35.967	36.174	-0.12799					5	3	2	0	0	0	0.32753	1	13566	13566		34.402	13.987	1	8229900			30700	3968	19311	19416	29568	29568					0.02300908000745494
SLATHLQEL	9	Unmodified	_SLATHLQEL_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	HCT116MG_D190212_S1	1	506.2776184082031	2	506.277106	1010.53966	0.23282	0.00011787	0.18451	9.3414E-05	0.41733	0.00021129	506.27708981664335	42.749	0.25899	42.749	42.588	42.847	0					8	4	2	0	0	0	0.045679	1	16150	16150		76.825	20.648	1	8124000			30701	1663	19312	19417	29569	29569					0.034811525806162535
SLATHLQEL	9	Unmodified	_SLATHLQEL_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	HCT116MG_D190212_S2	2	506.2770080566406	2	506.277106	1010.53966	0.73573	0.00037248	-0.90708	-0.00045923	-0.17135	-8.6752E-05	506.2765021929929	42.734	0.25971	42.664	42.481	42.741	-0.069984					9	4	3	0	0	0	0.02327	1	16190	16190		93.166	25.085	1	29809000			30702	1663	19312	19417	29570	29570					0.034811525806162535
SLATQLGGPAS	11	Unmodified	_SLATQLGGPAS_					0	0	0			REV__ENST00000561547.5_1_16:28890323-28891133:-|nuORF	REV__ENST00000561547.5_1_16:28890323-28891133:-|nuORF	MSMS	HCT116MG_D190212_S1	1	501.2665710449219	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.376	1	21.376	20.876	21.876	0								0	0	0	0.84388	1	7516	7516		27.223	3.4335	1		+		30703	16495	19313	19418	29571	29571					0.018685622009684266
SLAVEYDEQ	9	Unmodified	_SLAVEYDEQ_					0	0	0			REV__ENSG00000062725|ENST00000083182|APPBP2	REV__ENSG00000062725|ENST00000083182|APPBP2	MULTI-SECPEP	HCT116MG_D190212_S3	3	526.7603759765625	2	527.240386	1052.46622	0.30405	0.00016031	-4.0315	-0.0021256	-3.7275	-0.0019653	527.2389082289584	38.6	0.31183	38.298	38.04	38.352	-0.30137					7	5	2	0	0	0	0.19551	1	14322	14322		20.454	0	1	1156900	+		30704	10679	19314	19419	29572	29572					-0.05791440652524216
SLAVRGEQQT	10	Unmodified	_SLAVRGEQQT_					0	0	0		ENST00000605744.1_1_11:76922372-76925738:+|nuORF	ENST00000605744.1_1_11:76922372-76925738:+|nuORF	ENST00000605744.1_1_11:76922372-76925738:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1088.5701904296875	1	1088.56946	1087.56219	0.51218	0.00055754	0.1206	0.00013128	0.63278	0.00068882	1088.5696557502165	57.56	0.25928	57.56	57.412	57.671	0					9	4	3	0	0	0	0.83158	1	22169	22169		9.3831	0.63772	1	21293000			30705	9109	19315	19420	29573	29573					0.021907519782416784
SLAVSRKR	8	Unmodified	_SLAVSRKR_					0	0	0			REV__USP37|p.L656R|1|0.09|ENSG00000135913|chr2:218476916-218476916|A/C|missense_variant	REV__USP37|p.L656R|1|0.09|ENSG00000135913|chr2:218476916-218476916|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	459.4095764160156	2	458.787976	915.561398	0.086073	3.9489E-05	0.20278	9.3034E-05	0.28886	0.00013252	458.7879931873366	50.739	3.5304	50.384	49.901	53.432	-0.35483					155	67	5	0	0	0	0.86564	5	18822	18822;19033;19265;19505;19751		2.5775	0	1	833500000	+		30706	18045	19316	19421	29574;29575;29576;29577;29578	29574					0.10024002119860143
SLAVVMGVLL	10	Unmodified	_SLAVVMGVLL_					0	0	0			REV__tr|U7SM07|U7SM07_FUSNUFMN-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02007PE=4SV=1	REV__tr|U7SM07|U7SM07_FUSNUFMN-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02007PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	501.30670166015625	2	501.306821	1000.59909	0.50396	0.00025264	-0.27031	-0.00013551	0.23365	0.00011713	501.3065041802636	57.256	0.25968	57.077	56.895	57.155	-0.17904					5	4	2	0	0	0	0.56527	1	22132	22132		30.637	8.8899	1	18672000	+		30707	17716	19317	19422	29579	29579					0.09881332270458643
SLAWDPTTV	9	Unmodified	_SLAWDPTTV_					0	0	0		nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	MULTI-MSMS	HCT116MG_D190212_S2	2	495.25115966796875	2	495.250557	988.486562	0.55514	0.00027493	0.081266	4.0247E-05	0.6364	0.00031518	495.2506492603896	44.783	0.36364	44.698	44.535	44.899	-0.084797					10	6	2	0	0	0	0.32162	1	17053	17053		28.487	1.6032	1	13590000			30708	9391	19318	19423	29580	29580					-0.008142252020547858
SLAWDPTTV	9	Unmodified	_SLAWDPTTV_					0	0	0		nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	MULTI-MATCH	HCT116MG_D190212_S1	1		2	495.250557	988.486562	0.27697	0.00013717	0.41273	0.00020441	0.68971	0.00034158	495.2505973854722	44.715	0.20826	44.715	44.568	44.777	0	0.0082356	0.000258	NaN	28.487	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7199300			30709	9391	19318	19423							-0.008142252020547858
SLCCCGSG	8	Unmodified	_SLCCCGSG_					0	0	0			REV__ENST00000520316.5_1_8:28627126-28633440:-|nuORF	REV__ENST00000520316.5_1_8:28627126-28633440:-|nuORF	MSMS	HCT116MG_D190212_S4	4	365.1208801269531	2	365.12186	728.229166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.693	1	50.338	49.838	50.838	-0.35483								0	0	0	0.8837	1	18843	18843		0.69038	0.69038	1		+		30710	16228	19319	19424	29581	29581					-0.1458190494287237
SLCCDCCP	8	Unmodified	_SLCCDCCP_					0	0	0		nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	MSMS	HCT116MG_D190212_S1	1	422.12774658203125	2	422.128827	842.243102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.925	1	33.925	33.425	34.425	0								0	0	0	0.8837	1	12571	12571		0.79363	0	1				30711	4687	19320	19425	29582	29582					-0.18432995506111638
SLCKVLLLF	9	Unmodified	_SLCKVLLLF_					0	0	0			REV__ENST00000394239.7_1_17:57937735-57951917:-|nuORF	REV__ENST00000394239.7_1_17:57937735-57951917:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	518.3173828125	2	518.317189	1034.61982	0.46589	0.00024148	-0.13409	-6.9502E-05	0.33179	0.00017197	518.3170024299927	46.695	2.3672	46.584	45.597	47.964	-0.11122					121	45	4	0	0	0	0.70732	1	17506	17506		4.756	0	1	159940000	+		30712	15336	19321	19426	29583	29583					0.10389922650097105
SLCKVLLLF	9	Unmodified	_SLCKVLLLF_					0	0	0			REV__ENST00000394239.7_1_17:57937735-57951917:-|nuORF	REV__ENST00000394239.7_1_17:57937735-57951917:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	518.3175659179688	2	518.317189	1034.61982	0.16009	8.2978E-05	0.015778	8.1782E-06	0.17587	9.1156E-05	518.3171266326582	53.702	1.2379	53.513	52.501	53.739	-0.1894					32	23	3	0	0	0	0.70732	1	20702	20702		4.756	0	1	21526000	+		30713	15336	19321	19426	29584	29584					0.10389922650097105
SLDAPHSTY	9	Unmodified	_SLDAPHSTY_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	HCT116MG_D190212_S1	1	495.72998046875	2	495.729989	989.445425	0.36625	0.00018156	-0.50486	-0.00025027	-0.13861	-6.8712E-05	495.7297402528637	26.631	0.20811	26.631	26.501	26.709	0					5	3	2	0	0	0	0.33687	1	9661	9661		26.884	9.9414	1	3838100			30714	1343	19322	19427	29585	29585					-0.04971986241525883
SLDAPHSTY	9	Unmodified	_SLDAPHSTY_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	HCT116MG_D190212_S2	2	495.729736328125	2	495.729989	989.445425	0.35897	0.00017795	-0.41319	-0.00020483	-0.05422	-2.6879E-05	495.7296821546622	27	0.26288	26.647	26.503	26.766	-0.35254					7	4	2	0	0	0	0.11731	1	9815	9815		54.774	31.625	1	9184000			30715	1343	19322	19427	29586	29586					-0.04971986241525883
SLDGAPIGV	9	Unmodified	_SLDGAPIGV_					0	0	0		nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-4|EPB41L2	nc|ENSG00000079819|O43491-4|EPB41L2	MULTI-MSMS	HCT116MG_D190212_S2	2	828.4463500976562	1	828.44616	827.438883	0.91404	0.00075723	-0.0026266	-2.176E-06	0.91142	0.00075506	828.445792960884	43.899	0.36009	43.821	43.607	43.967	-0.078369					9	6	2	0	0	0	0.011506	1	16671	16671		109.63	38.496	1	24102000			30716	1387	19323	19428	29587	29587					0.018261205977637474
SLDGAPIGV	9	Unmodified	_SLDGAPIGV_					0	0	0		nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-4|EPB41L2	nc|ENSG00000079819|O43491-4|EPB41L2	MULTI-MATCH	HCT116MG_D190212_S3	3		1	828.44616	827.438883	0.99406	0.00082353	-0.048638	-4.0294E-05	0.94543	0.00078324	828.4454264705348	44.116	0.31223	43.808	43.603	43.916	-0.30759	-0.0060493	-2.7106E-05	NaN	109.63	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2234100			30717	1387	19323	19428							0.018261205977637474
SLDGDLAGRYY	11	Unmodified	_SLDGDLAGRYY_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	HCT116MG_D190212_S1	1	615.2941284179688	2	615.293485	1228.57242	0.91107	0.00056058	-0.23027	-0.00014169	0.6808	0.00041889	615.293293000743	41.576	0.31265	41.576	41.393	41.706	0					16	5	4	0	0	0	5.8079E-07	1	15660	15660		182.24	138.46	1	69591000			30718	4824	19324	19429	29588	29588					-0.032726850871767965
SLDGDLAGRYY	11	Unmodified	_SLDGDLAGRYY_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	HCT116MG_D190212_S2	2	615.2948608398438	2	615.293485	1228.57242	0.5427	0.00033392	-0.3133	-0.00019277	0.2294	0.00014115	615.2932851530433	41.541	0.56739	41.472	41.293	41.861	-0.068199					32	10	5	0	0	0	2.606E-15	2	15690	15690;15738		222.22	164.49	1	698650000			30719	4824	19324	19429	29589;29590	29589					-0.032726850871767965
SLDGDLAGRYY	11	Unmodified	_SLDGDLAGRYY_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	HCT116MG_D190212_S2	2	1229.582763671875	1	1229.57969	1228.57242	0.69424	0.00085362	0.73763	0.00090698	1.4319	0.0017606	1229.5805397552417	41.541	0.20406	41.473	41.345	41.549	-0.068199					6	3	2	0	0	0	3.1246999999999997E-22	1	15716	15716		244.98	195.43	1	37908000			30720	4824	19324	19429	29591	29591					-0.032726850871767965
SLDGDLAGRYY	11	Unmodified	_SLDGDLAGRYY_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	HCT116MG_D190212_S4	4	615.29345703125	2	615.293485	1228.57242	0.66985	0.00041215	-0.27695	-0.00017041	0.3929	0.00024175	615.2933438612687	41.887	0.24814	41.511	41.383	41.631	-0.37637					11	5	3	0	0	0	0.38706	1	15378	15378		56.177	40.33	1	8272500			30721	4824	19324	19429	29592	29592					-0.032726850871767965
SLDGDLAGRYY	11	Unmodified	_SLDGDLAGRYY_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	615.293485	1228.57242	0.27763	0.00017083	-0.52533	-0.00032323	-0.24769	-0.0001524	615.2931680878054	41.846	0.34702	41.543	41.382	41.729	-0.30257	0.017561	-0.00021143	NaN	222.22	18	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49774000			30722	4824	19324	19429							-0.032726850871767965
SLDGLLRV	8	Unmodified	_SLDGLLRV_					0	0	0			REV__ENST00000377716.6_1_9:37903591-37903951:-|nuORF	REV__ENST00000377716.6_1_9:37903591-37903951:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	437.5611572265625	2	436.763635	871.512717	0.14311	6.2505E-05	-0.031923	-1.3943E-05	0.11119	4.8562E-05	436.76362691090384	48.829	0.15257	48.685	48.591	48.743	-0.1437					4	2	2	0	0	0	0.2797	1	18647	18647		28.487	0	1	14930000	+		30723	15240	19325	19430	29593	29593					0.071820887600893
SLDGVAVAVL	10	Unmodified	_SLDGVAVAVL_					0	0	0		ARHGAP22|p.A399V|1|0.23|ENSG00000128805|chr10:48450933-48450933|G/A|missense_variant	ARHGAP22|p.A399V|1|0.23|ENSG00000128805|chr10:48450933-48450933|G/A|missense_variant	ARHGAP22|p.A399V|1|0.23|ENSG00000128805|chr10:48450933-48450933|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	472.2766418457031	2	472.276575	942.538597	0.003036	1.4338E-06	-0.204	-9.6346E-05	-0.20097	-9.4912E-05	472.2763998532092	40.202	0.31065	40.202	40.021	40.332	0					7	5	2	0	0	0	0.11491	1	15107	15107		71.134	4.6769	1	12875000			30724	174	19326	19431	29594	29594					0.06502938211713172
SLDGVAVAVL	10	Unmodified	_SLDGVAVAVL_					0	0	0		ARHGAP22|p.A399V|1|0.23|ENSG00000128805|chr10:48450933-48450933|G/A|missense_variant	ARHGAP22|p.A399V|1|0.23|ENSG00000128805|chr10:48450933-48450933|G/A|missense_variant	ARHGAP22|p.A399V|1|0.23|ENSG00000128805|chr10:48450933-48450933|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	472.2764587402344	2	472.276575	942.538597	0.26693	0.00012607	-0.32539	-0.00015368	-0.058461	-2.761E-05	472.27637186027084	40.148	0.46779	40.076	39.945	40.413	-0.072838					13	8	2	0	0	0	0.047709	1	15156	15156		88.904	3.2621	1	31681000			30725	174	19326	19431	29595	29595					0.06502938211713172
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	503.7819519042969	2	503.782025	1005.5495	0.15793	7.9563E-05	0.33635	0.00016945	0.49428	0.00024901	503.7821272266267	50.651	0.30952	50.651	50.472	50.781	0					14	5	3	0	0	0	0.0041644	1	19321	19321		148.27	48.177	1	255890000		+	30726	545	19327	19432	29596	29596					0.046943405859906306
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S1	1	1006.5592041015625	1	1006.55677	1005.5495	0.58244	0.00058626	0.406	0.00040866	0.98844	0.00099492	1006.557237594382	50.652	0.20669	50.652	50.523	50.73	0					5	3	2	0	0	0	0.016412	1	19346	19346		100.09	23.266	1	21951000		+	30727	545	19327	19432	29597	29597					0.046943405859906306
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	503.9020080566406	2	503.782025	1005.5495	0.47095	0.00023725	-0.014243	-7.1754E-06	0.4567	0.00023008	503.7820082492105	50.809	0.67382	50.637	50.351	51.025	-0.17193					37	12	5	0	0	0	0.0041644	2	19520	19464;19520		148.27	46.974	1	1451700000		+	30728	545	19327	19432	29598;29599	29599					0.046943405859906306
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S2	2	1006.5570678710938	1	1006.55677	1005.5495	0.59959	0.00060352	0.11137	0.0001121	0.71096	0.00071562	1006.5568010049515	50.808	0.46505	50.637	50.456	50.921	-0.1719					19	8	4	0	0	0	0.011132	1	19480	19480		110.55	24.221	1	214670000		+	30729	545	19327	19432	29600	29600					0.046943405859906306
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S3	3	503.7848205566406	2	503.782025	1005.5495	0.3269	0.00016469	0.06787	3.4191E-05	0.39477	0.00019888	503.78197764388653	51.002	0.67931	50.688	50.386	51.065	-0.31381					28	12	4	0	0	0	0.35128	1	19213	19213		25.399	3.6527	1	117580000		+	30730	545	19327	19432	29601	29601					0.046943405859906306
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S3	3	1006.5569458007812	1	1006.55677	1005.5495	0.5568	0.00056045	-0.094597	-9.5217E-05	0.4622	0.00046523	1006.5565110454891	51.005	0.20905	50.691	50.594	50.803	-0.31381					5	3	2	0	0	0	0.037825	1	19270	19270		80.676	3.8512	1	6222700		+	30731	545	19327	19432	29602	29602					0.046943405859906306
SLDKFLANV	9	Unmodified	_SLDKFLANV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	HCT116MG_D190212_S4	4	503.7826843261719	2	503.782025	1005.5495	0.24007	0.00012094	0.20752	0.00010454	0.44759	0.00022549	503.7820138293856	51.058	0.3642	50.703	50.521	50.885	-0.35483					17	6	4	0	0	0	0.0041644	1	18977	18977		148.27	48.177	1	30923000		+	30732	545	19327	19432	29603	29603					0.046943405859906306
SLDKFLASV	9	Unmodified	_SLDKFLASV_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	HCT116MG_D190212_S2	2	490.27734375	2	490.276575	978.538597	0.30644	0.00015024	0.4017	0.00019694	0.70814	0.00034719	490.27673499727655	52.716	0.31013	52.529	52.347	52.657	-0.18725					9	5	2	0	0	0	0.0096585	1	20264	20264		114.19	14.431	1	24842000			30733	5988	19328	19433	29604	29604					0.04846938211710494
SLDKFLASV	9	Unmodified	_SLDKFLASV_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	490.276575	978.538597	0.25357	0.00012432	0.2625	0.0001287	0.51607	0.00025302	490.2767301102974	52.884	0.20893	52.578	52.457	52.666	-0.30639	0.024247	-0.00011736	NaN	114.19	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2637600			30734	5988	19328	19433							0.04846938211710494
SLDKITSDQY	10	Unmodified	_SLDKITSDQY_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	HCT116MG_D190212_S2	2	585.8468627929688	2	585.287868	1168.56118	0.64459	0.00037727	0.64394	0.00037689	1.2885	0.00075416	585.2883343859343	36.503	0.2595	36.38	36.231	36.49	-0.12311					6	4	2	0	0	0	0.28114	1	13662	13662		26.884	9.441	1	4975800	+		30735	14375	19329	19434	29605	29605					-0.01635507181322282
SLDKTSHSV	9	Unmodified	_SLDKTSHSV_					0	0	0		GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant;GTF3C1|p.V2028Sfs*25|1|0.14|ENSG00000077235|chr16:27462329-27462329|C/-|frameshift_variant;nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000570129.1_1_16:27494722-27497377:-|nuORF	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	487.2510986328125	2	487.251089	972.487624	0.40293	0.00019633	-0.094984	-4.6281E-05	0.30794	0.00015004	487.2509055811235	17.868	0.15647	17.868	17.776	17.933	0					4	2	2	0	0	0	0.0059958	1	6128	6128		128.93	70.254	1	5547800			30736	1351	19330	19435	29606	29606					0.0002798916685833319
SLDKTSHSV	9	Unmodified	_SLDKTSHSV_					0	0	0		GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant;GTF3C1|p.V2028Sfs*25|1|0.14|ENSG00000077235|chr16:27462329-27462329|C/-|frameshift_variant;nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000570129.1_1_16:27494722-27497377:-|nuORF	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	487.2511291503906	2	487.251089	972.487624	-0.21779	-0.00010612	0.56809	0.0002768	0.3503	0.00017068	487.25126067110693	18.502	0.2091	18.139	18.008	18.217	-0.36325					6	3	2	0	0	0	0.0059958	1	6385	6385		128.93	72.755	1	30947000			30737	1351	19330	19435	29607	29607					0.0002798916685833319
SLDPHQFPP	9	Unmodified	_SLDPHQFPP_					0	0	0			REV__ENSG00000112218|ENST00000229955|GPR63	REV__ENSG00000112218|ENST00000229955|GPR63	MSMS	HCT116MG_D190212_S2	2	519.138916015625	2	519.256174	1036.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.226	1	19.847	19.347	20.347	-0.37949								0	0	0	0.76669	1	7058	7058		12.532	0.89125	1		+		30738	11451	19331	19436	29608	29608					-0.01899403107904618
SLDQPGGTL	9	Unmodified	_SLDQPGGTL_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S1	1	887.4469604492188	1	887.446888	886.439611	0.83662	0.00074246	0.1482	0.00013152	0.98482	0.00087398	887.4469060234493	35.932	0.51998	35.932	35.578	36.098	0					10	9	2	0	0	0	0.0094709	1	13386	13386		114.65	22.158	1	8866000			30739	3098	19332	19437	29609	29609					-0.008150847531624095
SLDQPGGTL	9	Unmodified	_SLDQPGGTL_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S3	3	887.2149047851562	1	887.446888	886.439611	0.44704	0.00039673	0.39247	0.0003483	0.83952	0.00074503	887.4471087345577	36.163	0.41582	35.863	35.678	36.093	-0.30042					15	7	3	0	0	0	0.0034669	2	13348	13348;13353		163.69	63.931	1	30587000			30740	3098	19332	19437	29610;29611	29610					-0.008150847531624095
SLDQPGGTL	9	Unmodified	_SLDQPGGTL_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S4	4	887.4478149414062	1	887.446888	886.439611	0.93619	0.00083082	0.25089	0.00022265	1.1871	0.0010535	887.4467153543383	36.278	0.3487	35.892	35.673	36.022	-0.38558					10	6	2	0	0	0	0.0080847	1	13261	13261		118.07	32.427	1	8137100			30741	3098	19332	19437	29612	29612					-0.008150847531624095
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S1	1	494.7509460449219	2	494.750921	987.48729	0.31055	0.00015364	2.7004	0.001336	3.0109	0.0014897	494.7507364826474	30.125	1.2342	30.125	29.529	30.763	0					61	23	4	0	0	0	0.0096523	1	10997	10997		114.2	28.56	1	91316000			30742	5757	19333	19438	29613	29613					-0.0069543055299163825
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S1	1	988.4943237304688	1	988.494566	987.48729	0.52588	0.00051983	0.34826	0.00034425	0.87414	0.00086409	988.4944505151195	30.106	0.55816	30.106	29.893	30.451	0					21	10	3	0	0	0	0.0036431	1	11003	11003		155.95	33.775	1	31236000			30743	5757	19333	19438	29614	29614					-0.0069543055299163825
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S2	2	988.4942626953125	1	988.494566	987.48729	0.55642	0.00055002	1.5907	0.0015724	2.1471	0.0021224	988.4940314757796	30.395	0.77243	30.11	29.873	30.646	-0.28453					46	14	4	0	0	0	0.0036431	1	11130	11130		155.95	41.305	1	289700000			30744	5757	19333	19438	29615	29615					-0.0069543055299163825
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MSMS	HCT116MG_D190212_S2	2	494.75067138671875	2	494.750921	987.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.32	1	30.035	29.535	30.535	-0.28453								0	0	0	0.006	1	11142	11142		114.2	24.801	1				30745	5757	19333	19438	29616	29616					-0.0069543055299163825
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S3	3	988.494384765625	1	988.494566	987.48729	0.6733	0.00066555	1.9571	0.0019346	2.6304	0.0026001	988.4942152901493	30.493	0.75468	30.243	30.069	30.824	-0.24946					59	27	3	0	0	0	0.0029864	1	11082	11082		181.69	47.395	1	45271000			30746	5757	19333	19438	29617	29617					-0.0069543055299163825
SLDREETAIY	10	Unmodified	_SLDREETAIY_					0	0	0		PCDH9|p.H326Y|1|0.74|ENSG00000184226|chr13:67227465-67227465|G/A|missense_variant	PCDH9|p.H326Y|1|0.74|ENSG00000184226|chr13:67227465-67227465|G/A|missense_variant	PCDH9|p.H326Y|1|0.74|ENSG00000184226|chr13:67227465-67227465|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	598.848876953125	2	598.793318	1195.57208	0.54742	0.00032779	-0.27906	-0.0001671	0.26836	0.00016069	598.7932147759749	27.764	0.3121	27.764	27.592	27.904	0					10	5	3	0	0	0	0.12519	2	10069	10069;10099		69.105	17.475	1	9409400			30747	9730	19334	19439	29618;29619	29618					-0.017881048070421457
SLDREETAIY	10	Unmodified	_SLDREETAIY_					0	0	0		PCDH9|p.H326Y|1|0.74|ENSG00000184226|chr13:67227465-67227465|G/A|missense_variant	PCDH9|p.H326Y|1|0.74|ENSG00000184226|chr13:67227465-67227465|G/A|missense_variant	PCDH9|p.H326Y|1|0.74|ENSG00000184226|chr13:67227465-67227465|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	598.7916259765625	2	598.793318	1195.57208	0.68755	0.0004117	-0.71294	-0.0004269	-0.025389	-1.5203E-05	598.7924850253581	28.242	0.62068	27.912	27.512	28.133	-0.32987					21	11	3	0	0	0	0.21913	1	10305	10305		57.722	6.867	1	57332000			30748	9730	19334	19439	29620	29620					-0.017881048070421457
SLDRIRPILVL	11	Unmodified	_SLDRIRPILVL_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MSMS	HCT116MG_D190212_S1	1	432.28021240234375	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.762	1	37.762	37.262	38.262	0								0	0	0	0.95665	1	14118	14118		2.8433	1.251	1				30749	8915	19335	19440	29621	29621					0.1781017569069263
SLDRIRPILVL	11	Unmodified	_SLDRIRPILVL_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MSMS	HCT116MG_D190212_S1	1	432.2803649902344	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.519	1	42.519	42.019	43.019	0								0	0	0	0.96121	1	16039	16039		0.45452	0	1				30750	8915	19335	19440	29622	29622					0.1781017569069263
SLDSLKPQ	8	Unmodified	_SLDSLKPQ_					0	0	0			REV__ENSG00000170456|ENST00000389082|DENND5B	REV__ENSG00000170456|ENST00000389082|DENND5B	MSMS	HCT116MG_D190212_S1	1	444.2447509765625	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.713	1	20.713	20.213	21.213	0								0	0	0	0.8396	1	7254	7254		19.439	0	1		+		30751	13300	19336	19441	29623	29623					0.02821792143527091
SLDTKSYLHY	10	Unmodified	_SLDTKSYLHY_					0	0	0			REV__ENST00000361565.8_1_1:201845464-201845701:+|nuORF	REV__ENST00000361565.8_1_1:201845464-201845701:+|nuORF	MSMS	HCT116MG_D190212_S2	2	613.8050537109375	2	613.806228	1225.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.995	1	27.658	27.158	28.158	-0.33635								0	0	0	0.22534	1	10193	10193		66.457	3.884	1		+		30752	15095	19337	19442	29624	29624					-0.005872105647540593
SLDTQPKKV	9	Unmodified	_SLDTQPKKV_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;TCF3|p.Q361Rfs*33|1|0.44|ENSG00000071564|chr19:1620980-1620980|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	508.2929382324219	2	508.292756	1014.57096	0.26081	0.00013257	0.16842	8.5607E-05	0.42923	0.00021818	508.2926854538859	19.574	0.20857	19.574	19.443	19.652	0					8	3	3	0	0	0	0.0063854	1	6798	6798		125.53	57.448	1	9153400			30753	1256	19338	19443	29625	29625					0.06425725614712974
SLDTQPKKV	9	Unmodified	_SLDTQPKKV_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;TCF3|p.Q361Rfs*33|1|0.44|ENSG00000071564|chr19:1620980-1620980|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	508.29296875	2	508.292756	1014.57096	0.2744	0.00013947	0.22354	0.00011362	0.49793	0.0002531	508.2927384258703	20.218	0.31251	19.839	19.657	19.969	-0.37949					15	5	4	0	0	0	0.0029864	1	7056	7056		181.69	99.162	1	61665000			30754	1256	19338	19443	29626	29626					0.06425725614712974
SLDTQPKKV	9	Unmodified	_SLDTQPKKV_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;TCF3|p.Q361Rfs*33|1|0.44|ENSG00000071564|chr19:1620980-1620980|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	508.2931213378906	2	508.292756	1014.57096	0.19303	9.8116E-05	0.26394	0.00013416	0.45697	0.00023227	508.29273339637285	19.196	0.25989	19.265	19.135	19.395	0.069159					11	4	3	0	0	0	0.0034469	1	6571	6571		179.17	90.22	1	18447000			30755	1256	19338	19443	29627	29627					0.06425725614712974
SLDTQPKKV	9	Unmodified	_SLDTQPKKV_					0	0	0		TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;TCF3|p.Q361Rfs*33|1|0.44|ENSG00000071564|chr19:1620980-1620980|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	TCF3|p.R525Gfs*76|1|0.09|ENSG00000071564|chr19:1615699-1615699|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	508.2924499511719	2	508.292756	1014.57096	0.16296	8.283E-05	-0.10717	-5.4474E-05	0.055786	2.8356E-05	508.2924883894214	19.602	0.20778	19.408	19.278	19.486	-0.19367					5	3	2	0	0	0	0.026999	1	6667	6667		89.401	37.132	1	5173800			30756	1256	19338	19443	29628	29628					0.06425725614712974
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2;PXMP2-DDB2|1|fusion	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	HCT116MG_D190212_S1	1	538.7902221679688	2	538.790381	1075.56621	0.40351	0.00021741	-0.072133	-3.8865E-05	0.33138	0.00017854	538.7902850466837	43.4	0.31166	43.4	43.212	43.524	0					16	5	4	0	0	0	0.0036092	1	16376	16376		171.09	63.899	1	93865000			30757	5438	19339	19444	29629	29629					0.03144841471953441
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2;PXMP2-DDB2|1|fusion	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	HCT116MG_D190212_S2	2	538.7903442382812	2	538.790381	1075.56621	0.33504	0.00018051	-0.0072449	-3.9035E-06	0.32779	0.00017661	538.7903119031889	43.404	0.66971	43.331	43.097	43.767	-0.073372					36	12	5	0	0	0	0.00027182	1	16435	16435		191.38	75.688	1	534620000			30758	5438	19339	19444	29630	29630					0.03144841471953441
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2;PXMP2-DDB2|1|fusion	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	HCT116MG_D190212_S3	3	538.7903442382812	2	538.790381	1075.56621	0.5207	0.00028055	-0.029512	-1.5901E-05	0.49119	0.00026465	538.7903111439463	43.676	0.62562	43.37	43.136	43.761	-0.30616					31	11	5	0	0	0	0.0066829	1	16265	16265		163.04	70.545	1	148150000			30759	5438	19339	19444	29631	29631					0.03144841471953441
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2;PXMP2-DDB2|1|fusion	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	HCT116MG_D190212_S3	3	1076.5753173828125	1	1076.57349	1075.56621	0.5056	0.00054431	0.51159	0.00055076	1.0172	0.0010951	1076.5738328779016	43.676	0.20859	43.37	43.24	43.448	-0.30616					5	3	2	0	0	0	0.0092896	1	16320	16320		152.89	69.457	1	3132900			30760	5438	19339	19444	29632	29632					0.03144841471953441
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2;PXMP2-DDB2|1|fusion	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	HCT116MG_D190212_S4	4	538.7904052734375	2	538.790381	1075.56621	0.40441	0.00021789	0.11891	6.407E-05	0.52332	0.00028196	538.7903775380387	43.764	0.45934	43.389	43.163	43.623	-0.37433					19	8	3	0	0	0	0.017735	1	16070	16070		125.53	59.072	1	48984000			30761	5438	19339	19444	29633	29633					0.03144841471953441
SLDVPGPSDP	10	Unmodified	_SLDVPGPSDP_					0	0	0		ENST00000470989.5_1_1:224499553-224514114:-|nuORF	ENST00000470989.5_1_1:224499553-224514114:-|nuORF	ENST00000470989.5_1_1:224499553-224514114:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.7510986328125	2	492.237647	982.460741	0.28757	0.00014155	-0.099907	-4.9178E-05	0.18767	9.2376E-05	492.23750764066983	26.947	0.36775	26.594	26.503	26.871	-0.35254					8	6	2	0	0	0	0.30526	1	9753	9753		6.2058	0	1	10879000			30762	8150	19340	19445	29634	29634					-0.031191194443181303
SLDYIMKLL	9	Unmodified	_SLDYIMKLL_					0	0	0		ENST00000265631.9_1_7:95749828-95750029:-|nuORF	ENST00000265631.9_1_7:95749828-95750029:-|nuORF	ENST00000265631.9_1_7:95749828-95750029:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.77978515625	2	548.309561	1094.60457	0.52688	0.00028889	-0.0043	-2.3577E-06	0.52258	0.00028654	548.8110129477055	56.106	0.15343	55.924	55.796	55.949	-0.18261					4	2	2	0	0	0	0.22393	1	21626	21626		25.399	3.6527	1	4054900			30763	6902	19341	19446	29635	29635					0.06105011062277299
SLEAEYSPR	9	Unmodified	_SLEAEYSPR_					0	0	0			REV__nc|ENSG00000156453|Q08174|PCDH1	REV__nc|ENSG00000156453|Q08174|PCDH1	MSMS	HCT116MG_D190212_S2	2	351.17352294921875	3	351.173339	1050.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.206	1	18.836	18.336	19.336	-0.3695								0	0	0	0.7663	1	6646	6646		9.544	1.0997	1		+		30764	12722	19342	19447	29636	29636					-0.025040281787141794
SLEDEHLLY	9	Unmodified	_SLEDEHLLY_					0	0	0		B3GALNT1|p.T222Pfs*23|1|0.35|ENSG00000169255|chr3:161086091-161086091|T/-|frameshift_variant;ENSG00000169255|ENST00000320474|B3GALNT1	B3GALNT1|p.T222Pfs*23|1|0.35|ENSG00000169255|chr3:161086091-161086091|T/-|frameshift_variant	B3GALNT1|p.T222Pfs*23|1|0.35|ENSG00000169255|chr3:161086091-161086091|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	559.771240234375	2	559.771854	1117.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.771	1	45.67	45.17	46.17	-0.1014								0	0	0	0.42657	1	17416	17416		32.305	0	1				30765	242	19343	19448	29637	29637					-0.02490874864452053
SLEDNKHALY	10	Unmodified	_SLEDNKHALY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	HCT116MG_D190212_S1	1	595.296875	2	595.296027	1188.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.265	1	29.265	28.765	29.765	0								0	0	0	0.84761	1	10689	10689		22.658	0.91144	1				30766	6063;18668	19344	19449	29638	29638					-0.009243812245813388
SLEDNKHALY	10	Unmodified	_SLEDNKHALY_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	HCT116MG_D190212_S2	2	595.2980346679688	2	595.296027	1188.5775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.705	1	29.404	28.904	29.904	-0.30095								0	0	0	0.61414	1	10892	10892		41.956	16.556	1				30767	6063;18668	19344	19449	29639	29639					-0.009243812245813388
SLEDSRKAKY	10	Unmodified	_SLEDSRKAKY_					0	0	0			REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	MSMS	HCT116MG_D190212_S1	1	598.8179321289062	2	598.817127	1195.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.597	1	31.597	31.097	32.097	0								0	0	0	0.90892	1	11631	11631		13.906	0	1		+		30768	14097	19345	19450	29640	29640					0.029715941838276194
SLEDSRKAKY	10	Unmodified	_SLEDSRKAKY_					0	0	0			REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	599.3190307617188	2	598.817127	1195.6197	0.87383	0.00052326	-0.10248	-6.1366E-05	0.77135	0.0004619	598.8171281031241	31.765	0.31061	31.516	31.354	31.665	-0.24883					8	5	2	0	0	0	0.53455	1	11755	11755		32.786	4.2912	1	18021000	+		30769	14097	19345	19450	29641	29641					0.029715941838276194
SLEDSRKAKY	10	Unmodified	_SLEDSRKAKY_					0	0	0			REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	598.817127	1195.6197	0.64464	0.00038602	0.56598	0.00033892	1.2106	0.00072494	598.8174167640695	31.518	0.20823	31.518	31.388	31.596	0	0.00084967	0.00050934	NaN	32.786	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7107600	+		30770	14097	19345	19450							0.029715941838276194
SLEDSRKAKY	10	Unmodified	_SLEDSRKAKY_					0	0	0			REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	598.817127	1195.6197	0.87383	0.00052326	-0.10248	-6.1366E-05	0.77135	0.0004619	598.8171281031241	31.765	0.31061	31.516	31.354	31.665	-0.24883	-0.00084967	-0.00029123	NaN	32.786	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18021000	+		30771	14097	19345	19450							0.029715941838276194
SLEELLHYV	9	Unmodified	_SLEELLHYV_					0	0	0		ENSG00000145916|ENST00000313386|RMND5B;ENST00000507575.5_1_5:177558043-177570729:+|nuORF;RMND5B|p.Y129Lfs*138|1|0.21|ENSG00000145916|chr5:178142950-178142951|-/T|frameshift_variant	ENSG00000145916|ENST00000313386|RMND5B	ENSG00000145916|ENST00000313386|RMND5B	MULTI-SECPEP	HCT116MG_D190212_S1	1	552.3522338867188	2	551.792589	1101.57063	0.47483	0.00026201	-0.37763	-0.00020837	0.097208	5.3639E-05	551.7925234488806	56.815	0.15545	56.815	56.686	56.841	0					4	2	2	0	0	0	0.22781	1	21830	21830		23.148	5.0021	1	5716800			30772	3933	19346	19451	29642	29642					0.02390305894869016
SLEFYQKKKSR	11	Unmodified	_SLEFYQKKKSR_					0	0	0		ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	ENSG00000123395|ENST00000336854|ATG101	MSMS	HCT116MG_D190212_S2	2	707.3978271484375	2	707.396076	1412.7776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.585	1	49.421	48.921	49.921	-0.16369								0	0	0	0.91433	1	18981	18981		18.146	1.0335	1				30773	2801	19347	19452	29643	29643					0.08772093443008089
SLEGSFKAD	9	Unmodified	_SLEGSFKAD_					0	0	0			REV__ENST00000343122.7_2_6:90798816-91006273:-|nuORF	REV__ENST00000343122.7_2_6:90798816-91006273:-|nuORF	MSMS	HCT116MG_D190212_S4	4	477.2305603027344	2	477.232364	952.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.065	1	57.776	57.276	58.276	-0.28879								0	0	0	0.76923	1	21812	21812		3.5965	0.60125	1		+		30774	14993	19348	19453	29644	29644					-0.02795102098764346
SLEHLEQLAQY	11	Unmodified	_SLEHLEQLAQY_					0	0	0		ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	MULTI-SECPEP	HCT116MG_D190212_S1	1	666.4263916015625	2	665.835517	1329.65648	0.8064	0.00053693	-0.11787	-7.8481E-05	0.68853	0.00045845	665.8351258199743	45.719	0.21041	45.719	45.607	45.818	0					6	3	2	0	0	0	0.36231	1	17362	17362		8.7454	2.5396	1	7016500			30775	5869	19349	19454	29645	29645					0.004838460097289499
SLEHLEQLAQY	11	Unmodified	_SLEHLEQLAQY_					0	0	0		ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	MULTI-MSMS	HCT116MG_D190212_S2	2	665.8352661132812	2	665.835517	1329.65648	0.39522	0.00026315	-0.2369	-0.00015774	0.15832	0.00010541	665.8351165955366	45.792	0.25629	45.69	45.556	45.812	-0.1014					9	4	3	0	0	0	0.67041	1	17450	17450		27.629	2.6378	1	37580000			30776	5869	19349	19454	29646	29646					0.004838460097289499
SLEHLEQLAQY	11	Unmodified	_SLEHLEQLAQY_					0	0	0		ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	ENSG00000186150|ENST00000334179|UBL4B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	665.835517	1329.65648	0.39522	0.00026315	-0.2369	-0.00015774	0.15832	0.00010541	665.8351165955366	45.792	0.25629	45.69	45.556	45.812	-0.1014	-0.014135	-3.903E-05	NaN	8.7454	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37580000			30777	5869	19349	19454							0.004838460097289499
SLEKLLKEKQA	11	Unmodified	_SLEKLLKEKQA_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MSMS	HCT116MG_D190212_S3	3	643.889404296875	2	643.887552	1285.76055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.648	1	54.353	53.853	54.853	-0.29587								0	0	0	0.9465	1	20712	20712		8.1555	1.4324	1				30778	1963	19350	19455	29647	29647					0.12910172837246137
SLELRCNYS	9	Unmodified	_SLELRCNYS_					0	0	0		nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3	nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3	nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3	MULTI-MSMS	HCT116MG_D190212_S2	2	542.8397216796875	2	542.758223	1083.50189	0.3784	0.00020538	3.3137	0.0017986	3.6921	0.0020039	542.7601638589007	49.264	0.20216	49.11	48.985	49.187	-0.15405					5	3	2	0	0	0	0.43775	1	18842	18842		20.454	1.1966	1	9947200			30779	9626	19351	19456	29648	29648					-0.036516816765242766
SLELYQQAN	9	Unmodified	_SLELYQQAN_					0	0	0		tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	tr|U7T652|U7T652_FUSNUHelicaseC-terminaldomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00108PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.2645263671875	2	533.264196	1064.51384	0.48938	0.00026097	-0.086522	-4.6139E-05	0.40286	0.00021483	533.2641728316585	27.746	0.30929	27.404	27.191	27.5	-0.34201					6	5	2	0	0	0	0.2336	1	10116	10116		17.113	0	1	10201000			30780	18642	19352	19457	29649	29649					-0.015837416616705013
SLEPVDLSEPN	11	Unmodified	_SLEPVDLSEPN_					0	0	0		SERPINE3|p.A142V|2|0.12|ENSG00000253309|chr13:51344420-51344420|C/T|missense_variant	SERPINE3|p.A142V|2|0.12|ENSG00000253309|chr13:51344420-51344420|C/T|missense_variant	SERPINE3|p.A142V|2|0.12|ENSG00000253309|chr13:51344420-51344420|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	599.747802734375	2	600.29315	1198.57175	0.5535	0.00033226	0.56657	0.00034011	1.1201	0.00067237	600.7949839109874	31.718	0.52128	31.718	31.44	31.961	0					13	9	3	0	0	0	0.36112	1	11656	11656		10.8	0	1	5871500			30781	18146	19353	19458	29650	29650					-0.01959524526887435
SLESCSMIWE	10	Unmodified	_SLESCSMIWE_					0	0	0			REV__ENST00000525281.5_1_10:4868459-4888008:+|nuORF	REV__ENST00000525281.5_1_10:4868459-4888008:+|nuORF	MSMS	HCT116MG_D190212_S2	2	592.7501220703125	2	592.75175	1183.48895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.662	1	39.584	39.084	40.084	-0.077835								0	0	0	0.92607	1	14935	14935		10.074	0.6908	1		+		30782	13063	19354	19459	29651	29651					-0.09545880850896538
SLESQDLLEF	10	Unmodified	_SLESQDLLEF_					0	0	0			REV__nc|ENSG00000141699|Q86VR2-2|RETREG3	REV__nc|ENSG00000141699|Q86VR2-2|RETREG3	MSMS	HCT116MG_D190212_S4	4	394.1972961425781	3	394.195921	1179.56593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.351	1	35.966	35.466	36.466	-0.38558								0	0	0	0.94345	1	13299	13299		6.1918	0	1		+		30783	12339	19355	19460	29652	29652					-0.01666623038590842
SLETARDHVLP	11	Unmodified	_SLETARDHVLP_					0	0	0		nc|ENSG00000169083|P10275-2|AR	nc|ENSG00000169083|P10275-2|AR	nc|ENSG00000169083|P10275-2|AR	MSMS	HCT116MG_D190212_S3	3	619.3297729492188	2	619.330402	1236.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.323	1	27.154	26.654	27.654	-0.16933								0	0	0	0.82946	1	9841	9841		29.082	12.932	1				30784	9542	19356	19461	29653	29653					0.037392830751286965
SLETQPRALP	10	Unmodified	_SLETQPRALP_					0	0	0		ENST00000248450.8_1_2:219128952-219129252:-|nuORF	ENST00000248450.8_1_2:219128952-219129252:-|nuORF	ENST00000248450.8_1_2:219128952-219129252:-|nuORF	MSMS	HCT116MG_D190212_S4	4	556.3082275390625	2	556.308938	1110.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.794	1	41.417	40.917	41.917	-0.37637								0	0	0	0.90023	1	15337	15337		15.847	0	1				30785	6794	19357	19462	29654	29654					0.0524451301771478
SLEVKSSRSA	10	Unmodified	_SLEVKSSRSA_					0	0	0		AluSz_dup95216|chr19:38802681-38802977:-|1.3112723622281253|0.3989752402623974|1.72|478.0|1|1|sense	AluSz_dup95216|chr19:38802681-38802977:-|1.3112723622281253|0.3989752402623974|1.72|478.0|1|1|sense	AluSz_dup95216|chr19:38802681-38802977:-|1.3112723622281253|0.3989752402623974|1.72|478.0|1|1|sense	MSMS	HCT116MG_D190212_S3	3	532.2899780273438	2	532.290745	1062.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.561	1	35.262	34.762	35.762	-0.29922								0	0	0	0.72223	1	13118	13118		36.506	2.4038	1				30786	115	19358	19463	29655	29655					0.03815636121021271
SLEWKPDAP	9	Unmodified	_SLEWKPDAP_					0	0	0			REV__FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant	REV__FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	521.28466796875	2	521.763832	1041.51311	0.34701	0.00018105	0.13384	6.9832E-05	0.48084	0.00025089	521.7638191681525	35.186	0.25888	35.037	34.823	35.082	-0.14832					5	4	2	0	0	0	0.23301	1	13070	13070		10.824	0	1	9715700	+		30787	10734	19359	19464	29656	29656					-0.00598536310712916
SLFAGGMLRV	10	Unmodified	_SLFAGGMLRV_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-MSMS	HCT116MG_D190212_S1	1	526.2937622070312	2	525.791869	1049.56919	0.45856	0.0002411	0.79914	0.00042018	1.2577	0.00066128	526.2940751312605	54.84	0.1526	54.84	54.739	54.892	0					4	2	2	0	0	0	0.68623	1	21061	21061		21.537	4.4241	1	38021000			30788	5783	19360	19465	29657	29657					0.04638393325103607
SLFAGGMLRV	10	Unmodified	_SLFAGGMLRV_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000513799.5_1_5:177019550-177022414:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-MSMS	HCT116MG_D190212_S2	2	525.7918090820312	2	525.791869	1049.56919	0.396	0.00020821	0.2748	0.00014449	0.6708	0.0003527	525.7919055183695	55.03	0.30505	54.842	54.714	55.019	-0.18797					9	5	3	0	0	0	0.28726	1	21217	21217		51.63	22.548	1	168960000			30789	5783	19360	19465	29658	29658					0.04638393325103607
SLFEKGLKNV	10	Unmodified	_SLFEKGLKNV_					0	0	0		FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant;nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5;FBXL5|p.Q135Sfs*4|1|0.12|ENSG00000118564|chr4:15638689-15638689|A/-|frameshift_variant	FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant	FBXL5|p.S518Rfs*7|1|0.07|ENSG00000118564|chr4:15625550-15625551|-/ATCTTCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	567.8295288085938	2	567.829506	1133.64446	0.32581	0.00018501	-0.19295	-0.00010956	0.13286	7.5445E-05	567.8293808126505	38.338	0.20669	38.245	38.115	38.322	-0.09301					5	3	2	0	0	0	0.37453	1	14428	14428		43.982	21.324	1	18847000			30790	2611	19361	19466	29659	29659					0.08298274057187882
SLFFNNLP	8	Unmodified	_SLFFNNLP_					0	0	0			REV__ENST00000203630.9_2_12:6857635-6857698:-|nuORF	REV__ENST00000203630.9_2_12:6857635-6857698:-|nuORF	MSMS	HCT116MG_D190212_S2	2	476.2488098144531	2	476.25036	950.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.283	1	28.967	28.467	29.467	-0.31613								0	0	0	0.8837	1	10720	10720		9.3474	0.75416	1		+		30791	14496	19362	19467	29660	29660					0.00894399868752771
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	454.2662048339844	2	454.26601	906.517468	0.1669	7.5817E-05	0.21152	9.6086E-05	0.37842	0.0001719	454.26601194259774	50.658	0.77951	50.486	50.245	51.025	-0.17191					27	14	4	0	0	0	0.011132	1	19418	19418		110.55	18.061	1	275890000			30792	5119	19363	19468	29661	29661					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	907.525390625	1	907.524744	906.517468	0.74302	0.00067431	0.14646	0.00013291	0.88948	0.00080722	907.5248044321306	50.704	0.31114	50.532	50.351	50.662	-0.1719					8	5	2	0	0	0	0.0051419	1	19440	19440		136.39	50.751	1	58434000			30793	5119	19363	19468	29662	29662					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	454.26611328125	2	454.26601	906.517468	0.17956	8.1567E-05	0.079291	3.6019E-05	0.25885	0.00011759	454.2660211314404	50.934	0.36475	50.62	50.438	50.803	-0.31381					8	6	2	0	0	0	0.10244	1	19222	19222		57.722	15.882	1	10340000			30794	5119	19363	19468	29663	29663					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant;ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	PDCD6IP|p.F351Nfs*37|1|0.08|ENSG00000170248|chr3:33836259-33836260|-/AATCC|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	907.524744	906.517468	0.5803	0.00052663	0.16919	0.00015355	0.74949	0.00068018	907.5247013878687	50.548	0.20583	50.548	50.42	50.626	0	0.0080059	1.1579E-05	NaN	136.39	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12331000			30795	5119	19363	19468							0.06046972902856851
SLFGGTSGL	9	Unmodified	_SLFGGTSGL_					0	0	0		HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.A3108Gfs*4|1|0.12|ENSG00000173064|chr12:112185242-112185243|CC/-|frameshift_variant;HECTD4|p.A3108Rfs*26|1|0.37|ENSG00000173064|chr12:112185242-112185242|C/-|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;HECTD4|p.L1880Pfs*22|1|0.19|ENSG00000173064|chr12:112231674-112231675|-/TAGGA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-3|HECTD4	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	838.4313354492188	1	838.430509	837.423233	0.68081	0.00057081	-0.34231	-0.000287	0.3385	0.00028381	838.4302157129068	53.013	0.25838	52.824	52.655	52.913	-0.18922					6	4	2	0	0	0	0.0034599	1	20386	20386		162.95	45.352	1	14482000			30796	5269	19364	19469	29664	29664					-0.0019816591928929483
SLFGNIKGA	9	Unmodified	_SLFGNIKGA_					0	0	0		nc|ENSG00000111885|P33908-2|MAN1A1;ENSG00000111885|ENST00000368468|MAN1A1	nc|ENSG00000111885|P33908-2|MAN1A1	nc|ENSG00000111885|P33908-2|MAN1A1	MSMS	HCT116MG_D190212_S2	2	453.75555419921875	2	453.75581	905.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.798	1	43.72	43.22	44.22	-0.078373								0	0	0	0.1044	1	16617	16617		54.774	6.4277	1				30797	2321	19365	19470	29665	29665					0.040538022430382625
SLFGNIKGA	9	Unmodified	_SLFGNIKGA_					0	0	0		nc|ENSG00000111885|P33908-2|MAN1A1;ENSG00000111885|ENST00000368468|MAN1A1	nc|ENSG00000111885|P33908-2|MAN1A1	nc|ENSG00000111885|P33908-2|MAN1A1	MSMS	HCT116MG_D190212_S3	3	453.7559509277344	2	453.75581	905.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.106	1	43.798	43.298	44.298	-0.30759								0	0	0	0.30227	1	16477	16477		39.957	13.074	1				30798	2321	19365	19470	29666	29666					0.040538022430382625
SLFHSILNV	9	Unmodified	_SLFHSILNV_					0	0	0		nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	MSMS	HCT116MG_D190212_S2	2	515.289794921875	2	515.290017	1028.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.648	1	55.462	54.962	55.962	-0.18565								0	0	0	0.067861	1	21455	21455		65.235	21.377	1				30799	849	19366	19471	29667	29667					0.05234046822897653
SLFKDQMEL	9	Unmodified	_SLFKDQMEL_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	HCT116MG_D190212_S1	1	555.7787475585938	2	555.778625	1109.5427	0.41009	0.00022792	-0.25613	-0.00014235	0.15396	8.5566E-05	555.7784255375618	49.209	0.25833	49.209	49.079	49.337	0					7	4	2	0	0	0	0.26031	1	18777	18777		34.932	10.911	1	10078000			30800	3248	19367	19472	29668	29668					-0.007693403568737267
SLFKDQMEL	9	Unmodified	_SLFKDQMEL_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MATCH	HCT116MG_D190212_S2	2		2	555.778625	1109.5427	0.18385	0.00010218	-1.2036	-0.00066891	-1.0197	-0.00056673	555.777957616808	49.367	0.15191	49.213	49.086	49.238	-0.15405	0.0019812	-7.0937E-05	NaN	34.932	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22156000			30801	3248	19367	19472							-0.007693403568737267
SLFKLIVKV	9	Unmodified	_SLFKLIVKV_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.E1442Gfs*4|1|0.39|ENSG00000080345|chr2:151463835-151463836|-/A|frameshift_variant;RIF1|p.K1441Rfs*18|1|0.2|ENSG00000080345|chr2:151463836-151463836|A/-|frameshift_variant;RIF1|p.K1505Rfs*18|3|0.3|ENSG00000080345|chr2:151464027-151464027|A/-|frameshift_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	HCT116MG_D190212_S1	1	523.8524169921875	2	523.852253	1045.68995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.157	1	53.157	52.657	53.657	0								0	0	0	0.22243	1	20351	20351		45.74	33.499	1				30802	1393	19368	19473	29669	29669					0.16893544310232755
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	HCT116MG_D190212_S1	1	495.2867126464844	2	495.286943	988.559333	0.29149	0.00014437	0.31004	0.00015356	0.60152	0.00029793	495.2871029324757	51.763	0.41907	51.763	51.549	51.968	0					14	7	2	0	0	0	0.16285	1	19783	19783		45.74	15.103	1	20452000			30803	5471	19369	19474	29670	29670					0.0645952859136969
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	HCT116MG_D190212_S2	2	495.2873840332031	2	495.286943	988.559333	0.525	0.00026003	-0.072148	-3.5734E-05	0.45285	0.00022429	495.2868441564099	51.986	0.5671	51.802	51.527	52.094	-0.18369					25	10	3	0	0	0	0.094138	1	19913	19913		59.368	23.241	1	74397000			30804	5471	19369	19474	29671	29671					0.0645952859136969
SLFPGQVVI	9	Unmodified	_SLFPGQVVI_					0	0	0		nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	MULTI-MSMS	HCT116MG_D190212_S2	2	959.556884765625	1	959.556044	958.548768	0.71006	0.00068135	0.032493	3.1179E-05	0.74256	0.00071252	959.5556928834908	56.945	0.26046	56.766	56.635	56.895	-0.17904					10	4	3	0	0	0	0.020181	1	22007	22007		96.285	25.569	1	15797000			30805	919	19370	19475	29672	29672					0.0678354593695758
SLFPGQVVI	9	Unmodified	_SLFPGQVVI_					0	0	0		nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	nc|ENSG00000014138|Q14181-2|POLA2	MULTI-MATCH	HCT116MG_D190212_S1	1		1	959.556044	958.548768	0.73516	0.00070543	-1.0286	-0.000987	-0.29344	-0.00028157	959.555468427017	56.815	0.15545	56.815	56.686	56.841	0	0.024876	-0.00056569	NaN	96.285	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5053100			30806	919	19370	19475							0.0678354593695758
SLFPHNPQFI	10	Unmodified	_SLFPHNPQFI_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	HCT116MG_D190212_S2	2	600.3146362304688	2	600.314023	1198.61349	0.75458	0.00045298	0.033942	2.0376E-05	0.78852	0.00047336	600.3141632606546	52.696	0.3107	52.508	52.295	52.606	-0.18725					9	5	2	0	0	0	0.019418	1	20272	20272		121.53	71.601	1	12058000			30807	2557	19371	19476	29673	29673					0.022131207429310962
SLFQIQLP	8	Unmodified	_SLFQIQLP_					0	0	0			REV__ENST00000371317.9_1_X:119737922-119739264:+|nuORF	REV__ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MSMS	HCT116MG_D190212_S4	4	473.2740173339844	2	473.273835	944.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.714	1	35.328	34.828	35.828	-0.38606								0	0	0	0.8837	1	13047	13047		14.582	4.3983	1		+		30808	15164	19372	19477	29674	29674					0.05863259419891165
SLFQIQLP	8	Unmodified	_SLFQIQLP_					0	0	0			REV__ENST00000371317.9_1_X:119737922-119739264:+|nuORF	REV__ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MSMS	HCT116MG_D190212_S4	4	473.2752380371094	2	473.273835	944.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.747	1	35.361	34.861	35.861	-0.38606								0	0	0	0.8837	1	13059	13059		14.582	0	1		+		30809	15164	19372	19477	29675	29675					0.05863259419891165
SLFRVITEV	9	Unmodified	_SLFRVITEV_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	HCT116MG_D190212_S1	1	532.8126220703125	2	532.310949	1062.60735	0.4385	0.00023342	0.21363	0.00011372	0.65213	0.00034714	532.3109211786115	54.358	0.20297	54.358	54.231	54.434	0					5	3	2	0	0	0	0.11907	1	20858	20858		61.602	13.853	1	22026000			30810	4109	19373	19478	29676	29676					0.07854602511406483
SLFRVITEV	9	Unmodified	_SLFRVITEV_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;EXT2|p.N517Tfs*3|1|0.49|ENSG00000151348|chr11:44206844-44206844|A/-|frameshift_variant	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	HCT116MG_D190212_S2	2	532.8208618164062	2	532.310949	1062.60735	0.45543	0.00024243	-0.1017	-5.4134E-05	0.35373	0.0001883	532.3108141911794	54.569	0.20341	54.379	54.252	54.456	-0.1894					6	3	2	0	0	0	0.021544	2	21001	21001;21029		114.2	42.279	1	101710000			30811	4109	19373	19478	29677;29678	29677					0.07854602511406483
SLFSAVHKI	9	Unmodified	_SLFSAVHKI_					0	0	0		ENSG00000147475|ENST00000519638|ERLIN2;ENST00000519872.1_1_8:37594193-37598024:+|nuORF;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2;ERLIN2|p.C16G|1|0.29|ENSG00000147475|chr8:37737968-37737968|T/G|missense_variant	ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	MSMS	HCT116MG_D190212_S2	2	501.29254150390625	2	501.292559	1000.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.301	1	42.232	41.732	42.732	-0.068199								0	0	0	0.10186	1	16008	16008		55.503	3.8729	1				30812	3987	19374	19479	29679	29679					0.07030350685522535
SLGAHRSG	8	Unmodified	_SLGAHRSG_					0	0	0		ENST00000533277.5_1_11:66612933-66613146:+|nuORF	ENST00000533277.5_1_11:66612933-66613146:+|nuORF	ENST00000533277.5_1_11:66612933-66613146:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	784.4074096679688	1	784.406026	783.39875	1.0127	0.00079435	1.2822	0.0010058	2.2949	0.0018001	784.4069979413536	56.997	0.31212	56.818	56.635	56.947	-0.17904					8	5	2	0	0	0	0.8672	1	22037	22037		2.3027	0	1	8436000			30813	8647	19375	19480	29680	29680					-0.0016138128214606695
SLGAQARSPGL	11	Unmodified	_SLGAQARSPGL_					0	0	0			REV__ENST00000476253.1_1_4:1718909-1719614:-|nuORF	REV__ENST00000476253.1_1_4:1718909-1719614:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7957763671875	2	528.793455	1055.57236	0.60922	0.00032215	2.4567	0.0012991	3.0659	0.0016212	528.7952883759247	40.631	0.36029	40.561	40.365	40.725	-0.069626					16	6	4	0	0	0	0.6626	1	15368	15368		28.495	5.3461	1	72429000	+		30814	15914	19376	19481	29681	29681					0.046793597034593404
SLGAYISTL	9	Unmodified	_SLGAYISTL_					0	0	0		PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000570001.5_1_16:15069056-15125764:+|nuORF	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	PDXDC1|p.P706Tfs*3|1|0.06|ENSG00000179889|chr16:15036023-15036024|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	924.5045776367188	1	924.503674	923.496398	0.97836	0.0009045	-0.030343	-2.8052E-05	0.94802	0.00087645	924.5033483514418	52.685	0.41826	52.378	52.195	52.613	-0.30639					15	7	3	0	0	0	0.031005	1	19924	19924		85.357	0	1	20614000			30815	5571	19377	19482	29682	29682					0.031589628033202644
SLGCAKVSEPK	11	Unmodified	_SLGCAKVSEPK_					0	0	0			REV__ENST00000367478.8_1_1:186342499-186342538:-|nuORF	REV__ENST00000367478.8_1_1:186342499-186342538:-|nuORF	MSMS	HCT116MG_D190212_S1	1	559.7957763671875	2	559.797349	1117.58014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.793	1	16.793	16.293	17.293	0								0	0	0	0.94145	1	5675	5675		10.8	0.72558	1		+		30816	15122	19378	19483	29683	29683					0.026057509087195285
SLGCPVSAA	9	Unmodified	_SLGCPVSAA_					0	0	0			REV__FOXG1|p.A383T|1|0.25|ENSG00000176165|chr14:28768426-28768426|G/A|missense_variant	REV__FOXG1|p.A383T|1|0.25|ENSG00000176165|chr14:28768426-28768426|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	402.7000732421875	2	402.699646	803.384739	0.11593	4.6684E-05	0.81768	0.00032928	0.9336	0.00037596	402.6998732646871	35.142	0.25898	34.845	34.7	34.959	-0.29773					10	4	3	0	0	0	0.59184	1	12957	12957		11.64	2.2929	1	10663000	+		30817	13537	19379	19484	29684	29684					-0.024817948254622024
SLGCPVSAA	9	Unmodified	_SLGCPVSAA_					0	0	0			REV__FOXG1|p.A383T|1|0.25|ENSG00000176165|chr14:28768426-28768426|G/A|missense_variant	REV__FOXG1|p.A383T|1|0.25|ENSG00000176165|chr14:28768426-28768426|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	804.3924560546875	1	804.392015	803.384739	0.9544	0.00076771	0.91432	0.00073547	1.8687	0.0015032	804.392455230514	35.126	0.25898	34.829	34.7	34.959	-0.29707					6	4	2	0	0	0	0.2682	1	12982	12982		34.102	5.6156	1	4779800	+		30818	13537	19379	19484	29685	29685					-0.024817948254622024
SLGCPVSAA	9	Unmodified	_SLGCPVSAA_					0	0	0			REV__FOXG1|p.A383T|1|0.25|ENSG00000176165|chr14:28768426-28768426|G/A|missense_variant	REV__FOXG1|p.A383T|1|0.25|ENSG00000176165|chr14:28768426-28768426|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	402.699646	803.384739	0.026839	1.0808E-05	0.89774	0.00036152	0.92458	0.00037233	402.69993273921597	34.908	0.3624	34.749	34.606	34.968	-0.15834	-0.047639	2.8422E-05	NaN	11.64	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28595000	+		30819	13537	19379	19484							-0.024817948254622024
SLGCPVSAA	9	Unmodified	_SLGCPVSAA_					0	0	0			REV__FOXG1|p.A383T|1|0.25|ENSG00000176165|chr14:28768426-28768426|G/A|missense_variant	REV__FOXG1|p.A383T|1|0.25|ENSG00000176165|chr14:28768426-28768426|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	402.699646	803.384739	0.11593	4.6684E-05	0.81768	0.00032928	0.9336	0.00037596	402.6998732646871	35.142	0.25898	34.845	34.7	34.959	-0.29773	0.047639	-3.6065E-05	NaN	11.64	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10663000	+		30820	13537	19379	19484							-0.024817948254622024
SLGEFHVRL	9	Unmodified	_SLGEFHVRL_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	529.2824096679688	2	529.293091	1056.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.518	1	45.518	45.018	46.018	0								0	0	0	0.44802	1	17248	17248		31.268	7.2478	1				30821	2330	19380	19485	29686	29686					0.04560565054430299
SLGGIFLKRLQ	11	Unmodified	_SLGGIFLKRLQ_					0	0	0			REV__ENST00000546565.1_1_12:93277549-93277891:+|nuORF	REV__ENST00000546565.1_1_12:93277549-93277891:+|nuORF	MSMS	HCT116MG_D190212_S1	1	616.3812866210938	2	616.379697	1230.74484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.533	1	23.533	23.033	24.033	0								0	0	0	0.95273	1	8385	8385		4.897	0.95262	1		+		30822	10177	19381	19486	29687	29687					0.13869931110866673
SLGIYKVISL	10	Unmodified	_SLGIYKVISL_					0	0	0		nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	MSMS	HCT116MG_D190212_S2	2	546.8280639648438	2	546.8368	1091.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.79	1	55.604	55.104	56.104	-0.18565								0	0	0	0.94551	1	21513	21513		5.7319	0.43497	1				30823	9652	19382	19487	29688	29688					0.11688346205346534
SLGKVFGV	8	Unmodified	_SLGKVFGV_					0	0	0		ENST00000558825.5_1_15:91337395-91358506:+|nuORF;ENSG00000197299|ENST00000355112|BLM	ENST00000558825.5_1_15:91337395-91358506:+|nuORF	ENST00000558825.5_1_15:91337395-91358506:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	403.74200439453125	2	403.742171	805.469789	-0.095253	-3.8458E-05	-0.083891	-3.3871E-05	-0.17914	-7.2328E-05	403.74211964542684	46.042	0.3074	45.941	45.761	46.068	-0.1014					9	5	2	0	0	0	0.60054	1	17566	17566		32.305	9.1571	1	11528000			30824	6134	19383	19488	29689	29689					0.05927318702674711
SLGLEIRR	8	Unmodified	_SLGLEIRR_					0	0	0		ENST00000539783.5_2_2:172290933-172291600:+|nuORF	ENST00000539783.5_2_2:172290933-172291600:+|nuORF	ENST00000539783.5_2_2:172290933-172291600:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	472.287841796875	2	472.287808	942.561064	0.19464	9.1925E-05	0.19208	9.0719E-05	0.38672	0.00018264	472.28784163487165	51.858	1.2272	51.548	51.122	52.349	-0.30927					48	23	3	0	0	0	0.8506	1	19515	19515		5.2307	0	1	37162000			30825	8685	19384	19489	29690	29690					0.08748582400005489
SLGLKEIFTPV	11	Unmodified	_SLGLKEIFTPV_					0	0	0		ENST00000220244.7_1_15:81241617-81241845:+|nuORF	ENST00000220244.7_1_15:81241617-81241845:+|nuORF	ENST00000220244.7_1_15:81241617-81241845:+|nuORF	MSMS	HCT116MG_D190212_S1	1	602.3505249023438	2	602.352814	1202.69108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.187	1	54.187	53.687	54.687	0								0	0	0	0.95196	1	20772	20772		5.2969	1.3525	1				30826	6750	19385	19490	29691	29691					0.09783713888464263
SLGLSSQRKL	10	Unmodified	_SLGLSSQRKL_					0	0	0			REV__ENST00000566850.1_1_16:19710790-19711795:+|nuORF	REV__ENST00000566850.1_1_16:19710790-19711795:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	544.8255615234375	2	544.824755	1087.63496	0.55005	0.00029968	0.10364	5.6464E-05	0.65368	0.00035614	544.8246809215399	53.367	1.0932	53.032	52.671	53.764	-0.33473					55	20	4	0	0	0	0.88076	1	20086	20086		3.2813	1.2216	1	18999000	+		30827	11195	19386	19491	29692	29692					0.09464505771666154
SLGNRRHKK	9	Unmodified	_SLGNRRHKK_					0	0	0			REV__ENSG00000170836|ENST00000305921|PPM1D	REV__ENSG00000170836|ENST00000305921|PPM1D	MULTI-SECPEP	HCT116MG_D190212_S1	1	547.7473754882812	2	548.328331	1094.64211	0.38169	0.00020929	-1.8354	-0.0010064	-1.4537	-0.00079712	548.3272906348644	44.388	0.58242	44.388	43.986	44.568	0					12	10	2	0	0	0	0.25874	1	16803	16803		7.2892	4.9865	1	17927000	+		30828	13318	19387	19492	29693	29693					0.09857283162750718
SLGSKINVEV	10	Unmodified	_SLGSKINVEV_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MULTI-MSMS	HCT116MG_D190212_S1	1	523.29833984375	2	523.298039	1044.58152	0.18342	9.5982E-05	0.50714	0.00026538	0.69055	0.00036137	523.2982725064836	39.735	0.20767	39.735	39.605	39.813	0					5	3	2	0	0	0	0.112	1	14923	14923		71.708	10.106	1	10902000		+	30829	537	19388	19493	29694	29694					0.06101708269147821
SLGSKINVEV	10	Unmodified	_SLGSKINVEV_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2975463867188	2	523.298039	1044.58152	0.18847	9.8626E-05	-0.54931	-0.00028745	-0.36084	-0.00018883	523.2976902454553	39.741	0.20579	39.664	39.58	39.786	-0.077183					5	3	2	0	0	0	0.023406	1	14991	14991		114.2	35.474	1	35939000		+	30830	537	19388	19493	29695	29695					0.06101708269147821
SLGTPPRAL	9	Unmodified	_SLGTPPRAL_					0	0	0			REV__TBX10|p.P319Rfs*20|1|0.14|ENSG00000167800|chr11:67631807-67631807|G/-|frameshift_variant	REV__TBX10|p.P319Rfs*20|1|0.14|ENSG00000167800|chr11:67631807-67631807|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	456.2691345214844	2	456.269084	910.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.326	1	23.326	22.826	23.826	0								0	0	0	0.64498	1	8302	8302		21.747	1.293	1		+		30831	17618	19389	19494	29696	29696					0.06477491134376123
SLGVLLTTA	9	Unmodified	_SLGVLLTTA_					0	0	0		HTR4|p.D100G|1|0.29|ENSG00000164270|chr5:148548722-148548722|T/C|missense_variant	HTR4|p.D100G|1|0.29|ENSG00000164270|chr5:148548722-148548722|T/C|missense_variant	HTR4|p.D100G|1|0.29|ENSG00000164270|chr5:148548722-148548722|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	874.5252075195312	1	874.52441	873.517133	1.1778	0.00103	-0.40178	-0.00035137	0.77605	0.00067867	874.5238278720886	47.897	0.20552	47.764	47.636	47.841	-0.13281					5	3	2	0	0	0	0.023611	1	18284	18284		92.822	21.689	1	46839000			30832	9230	19390	19495	29697	29697					0.07531553182991502
SLGVLLTTA	9	Unmodified	_SLGVLLTTA_					0	0	0		HTR4|p.D100G|1|0.29|ENSG00000164270|chr5:148548722-148548722|T/C|missense_variant	HTR4|p.D100G|1|0.29|ENSG00000164270|chr5:148548722-148548722|T/C|missense_variant	HTR4|p.D100G|1|0.29|ENSG00000164270|chr5:148548722-148548722|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	874.5253295898438	1	874.52441	873.517133	0.76603	0.00066991	0.32246	0.000282	1.0885	0.00095191	874.5245561767648	48.117	0.20874	47.801	47.671	47.879	-0.31596					5	3	2	0	0	0	0.050578	1	18111	18111		74.423	10.186	1	3890200			30833	9230	19390	19495	29698	29698					0.07531553182991502
SLGYKKGLTWL	11	Unmodified	_SLGYKKGLTWL_					0	0	0			REV__tr|U7SM42|U7SM42_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02073PE=3SV=1	REV__tr|U7SM42|U7SM42_FUSNUSSSfamilysolute:Na+symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02073PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	633.3690795898438	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.878	1	48.878	48.378	49.378	0								0	0	0	0.94851	1	18611	18611		7.1017	1.3699	1		+		30834	17719	19391	19496	29699	29699					0.0961882249964674
SLHAESPGFSQ	11	Unmodified	_SLHAESPGFSQ_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-SECPEP	HCT116MG_D190212_S4	4	580.7748413085938	2	580.272552	1158.53055	0.19726	0.00011446	0.37474	0.00021745	0.572	0.00033192	580.2727258977832	30.742	0.51073	30.378	30.21	30.72	-0.36416					27	14	2	0	0	0	0.34294	1	11083	11083		20.415	1.0526	1	9155700			30835	3480	19392	19497	29700	29700					-0.04237240775705686
SLHDAIMIV	9	Unmodified	_SLHDAIMIV_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	HCT116MG_D190212_S1	1	499.7699890136719	2	499.770603	997.526652	0.16789	8.3909E-05	-0.42046	-0.00021013	-0.25257	-0.00012622	499.7702681741669	50.755	0.31005	50.755	50.626	50.936	0					7	5	2	0	0	0	0.050578	1	19398	19398		74.423	30.016	1	34640000			30836	3363	19393	19498	29701	29701					0.027789981968794564
SLHDAIMIV	9	Unmodified	_SLHDAIMIV_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	HCT116MG_D190212_S2	2	499.77069091796875	2	499.770603	997.526652	0.39456	0.00019719	0.029404	1.4695E-05	0.42396	0.00021188	499.77053804864477	50.894	0.30991	50.715	50.552	50.862	-0.17868					13	5	3	0	0	0	0.011506	1	19510	19510		109.63	67.535	1	83016000			30837	3363	19393	19498	29702	29702					0.027789981968794564
SLHDAIMIV	9	Unmodified	_SLHDAIMIV_					0	0	0		nc|ENSG00000135624|Q99832-2|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	HCT116MG_D190212_S2	2	998.5342407226562	1	998.533929	997.526652	0.51632	0.00051557	0.020474	2.0444E-05	0.5368	0.00053601	998.5338030324577	50.876	0.25797	50.697	50.552	50.81	-0.17869					7	4	2	0	0	0	0.023611	1	19529	19529		92.822	50.728	1	19094000			30838	3363	19393	19498	29703	29703					0.027789981968794564
SLHDMKTVV	9	Unmodified	_SLHDMKTVV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	HCT116MG_D190212_S1	1	515.2739868164062	2	515.273509	1028.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.619	1	30.619	30.119	31.119	0								0	0	0	0.30238	1	11237	11237		39.95	20.693	1				30839	6063	19394	19499	29704	29704					0.01934096708555444
SLHDMKTVV	9	Unmodified	_SLHDMKTVV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	HCT116MG_D190212_S2	2	515.2735595703125	2	515.273509	1028.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.972	1	30.704	30.204	31.204	-0.26704								0	0	0	0.47756	1	11407	11407		29.841	10.584	1				30840	6063	19394	19499	29705	29705					0.01934096708555444
SLHDRIYVI	9	Unmodified	_SLHDRIYVI_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	HCT116MG_D190212_S1	1	558.314453125	2	558.314023	1114.61349	0.75067	0.00041911	-0.63019	-0.00035185	0.12048	6.7263E-05	558.3137701756668	41.687	0.4165	41.687	41.393	41.81	0					11	7	3	0	0	0	0.0055242	1	15715	15715		133.05	44.098	1	15690000			30841	2562	19395	19500	29706	29706					0.06077120742952502
SLHDRIYVI	9	Unmodified	_SLHDRIYVI_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	HCT116MG_D190212_S2	2	372.5451354980469	3	372.545108	1114.61349	-0.0463	-1.7249E-05	0.070123	2.6124E-05	0.023823	8.8751E-06	372.54508910173166	41.642	0.25768	41.574	41.447	41.705	-0.068199					7	4	2	0	0	0	0.28073	1	15770	15770		24.882	8.3157	1	21496000			30842	2562	19395	19500	29707	29707					0.06077120742952502
SLHDRIYVI	9	Unmodified	_SLHDRIYVI_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MSMS	HCT116MG_D190212_S2	2	558.3143920898438	2	558.314023	1114.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.658	1	41.59	41.09	42.09	-0.068199								0	0	0	0.0001246	1	15747	15747		133.05	39.169	1				30843	2562	19395	19500	29708	29708					0.06077120742952502
SLHDVLFEL	9	Unmodified	_SLHDVLFEL_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2984619140625	2	536.787307	1071.56006	0.5544	0.0002976	0.18776	0.00010079	0.74217	0.00039839	536.7872534085574	57.048	0.20741	56.869	56.739	56.947	-0.17904					6	3	2	0	0	0	0.023611	1	22014	22014		92.822	41.967	1	20663000			30844	1204	19396	19501	29709	29709					0.02714323240434169
SLHLLMET	8	Unmodified	_SLHLLMET_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;MYO5A|p.I1440Nfs*19|1|0.44|ENSG00000197535|chr15:52336477-52336478|-/T|frameshift_variant;ENSG00000167306|ENST00000285039|MYO5B	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	HCT116MG_D190212_S3	3	472.2753601074219	2	472.249503	942.484453	0.24129	0.00011395	0.25921	0.00012241	0.5005	0.00023636	472.24960951938294	34.14	0.26019	33.845	33.767	34.027	-0.29419					5	4	2	0	0	0	0.31855	1	12566	12566		13.508	0	1	4581800			30845	6153	19397	19502	29710	29710					0.010910227885005952
SLHLPTNVPV	10	Unmodified	_SLHLPTNVPV_					0	0	0			REV__ENST00000380191.8_1_10:5807813-5807927:-|nuORF	REV__ENST00000380191.8_1_10:5807813-5807927:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	539.51953125	2	538.808574	1075.60259	0.37105	0.00019993	2.5038	0.0013491	2.8749	0.001549	538.8096597178817	40.033	0.20769	39.96	39.842	40.05	-0.072838					5	3	2	0	0	0	0.77749	1	15065	15065		13.906	1.3745	1	6923500	+		30846	15267	19398	19503	29711	29711					0.06781718368642942
SLHNGVIQL	9	Unmodified	_SLHNGVIQL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF;COPA|p.N171Tfs*11|2|0.34|ENSG00000122218|chr1:160325637-160325637|T/-|frameshift_variant	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	HCT116MG_D190212_S2	2	490.7799377441406	2	490.779816	979.545079	0.066718	3.2744E-05	-0.038995	-1.9138E-05	0.027723	1.3606E-05	490.7801129292004	44.085	0.20497	44.006	43.916	44.121	-0.078373					5	3	2	0	0	0	0.10244	1	16763	16763		57.722	9.3761	1	11742000			30847	2753	19399	19504	29712	29712					0.054488761630864246
SLHTLFGDK	9	Unmodified	_SLHTLFGDK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	509.2710876464844	2	509.271824	1016.5291	-0.18968	-9.66E-05	-0.064384	-3.2789E-05	-0.25407	-0.00012939	509.27172756595684	38.029	0.46821	38.029	37.811	38.279	0					15	8	3	0	0	0	0.0056012	1	14221	14221		132.38	46.738	1	24068000		+	30848	554	19400	19505	29713	29713					0.021491699261900976
SLHTLFGDK	9	Unmodified	_SLHTLFGDK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S3	3	509.2720031738281	2	509.271824	1016.5291	0.19093	9.7237E-05	0.09895	5.0393E-05	0.28988	0.00014763	509.27181635706916	38.264	0.46679	37.963	37.833	38.3	-0.30137					13	8	2	0	0	0	0.0047539	1	14177	14177		139.78	32.842	1	20823000		+	30849	554	19400	19505	29714	29714					0.021491699261900976
SLHTLFGDK	9	Unmodified	_SLHTLFGDK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	509.2721862792969	2	509.271824	1016.5291	0.01303	6.6359E-06	0.62057	0.00031604	0.6336	0.00032268	509.27207971308405	38.458	0.47103	38.076	37.865	38.336	-0.38163					19	9	3	0	0	0	0.0034669	1	14078	14078		163.69	56.747	1	19541000		+	30850	554	19400	19505	29715	29715					0.021491699261900976
SLHTLFGDK	9	Unmodified	_SLHTLFGDK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-3|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MATCH	HCT116MG_D190212_S2	2		2	509.271824	1016.5291	0.1428	7.2724E-05	0.55947	0.00028492	0.70227	0.00035765	509.27201873192	38.13	0.30976	38.037	37.805	38.115	-0.09301	0.010879	0.00042407	NaN	163.69	11	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22375000		+	30851	554	19400	19505							0.021491699261900976
SLIDKHLNL	9	Unmodified	_SLIDKHLNL_					0	0	0		ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10;ARHGAP10|p.Q205Rfs*46|1|0.05|ENSG00000071205|chr4:147866721-147866721|T/-|frameshift_variant;ARHGAP10|p.K252Ifs*56|1|0.04|ENSG00000071205|chr4:147875072-147875073|-/TTTT|frameshift_variant;ENST00000510379.1_1_4:148653338-148778808:+|nuORF	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	527.2645263671875	2	526.808574	1051.60259	0.6861	0.00036144	-1.0733	-0.00056543	-0.38721	-0.00020399	526.8080796650098	41.68	0.20801	41.68	41.55	41.758	0					5	3	2	0	0	0	0.09841	1	15725	15725		47.749	13.347	1	6671800			30852	170	19401	19506	29716	29716					0.07885718368652306
SLIDKHLNL	9	Unmodified	_SLIDKHLNL_					0	0	0		ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10;ARHGAP10|p.Q205Rfs*46|1|0.05|ENSG00000071205|chr4:147866721-147866721|T/-|frameshift_variant;ARHGAP10|p.K252Ifs*56|1|0.04|ENSG00000071205|chr4:147875072-147875073|-/TTTT|frameshift_variant;ENST00000510379.1_1_4:148653338-148778808:+|nuORF	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	ARHGAP10|p.P593Qfs*55|1|0.39|ENSG00000071205|chr4:148023320-148023320|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	527.2642822265625	2	526.808574	1051.60259	0.57437	0.00030258	-0.46137	-0.00024305	0.113	5.953E-05	526.8082384643272	41.642	0.15474	41.574	41.498	41.653	-0.068199					4	2	2	0	0	0	0.032131	1	15743	15743		99.755	34.52	1	12500000			30853	170	19401	19506	29717	29717					0.07885718368652306
SLIDRTIKM	9	Unmodified	_SLIDRTIKM_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	HCT116MG_D190212_S2	2	538.5970458984375	2	538.810259	1075.60597	0.37105	0.00019993	-0.62422	-0.00033634	-0.25318	-0.00013641	538.8096597178817	40.033	0.20769	39.96	39.842	40.05	-0.072838					5	3	2	0	0	0	0.30054	1	15108	15108		30.703	6.9137	1	6923500			30854	3964	19402	19507	29718	29718					0.07118645151035707
SLIEGYISL	9	Unmodified	_SLIEGYISL_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	HCT116MG_D190212_S1	1	994.5462646484375	1	994.545539	993.538263	0.63005	0.00062661	0.052011	5.1727E-05	0.68206	0.00067834	994.5454277345287	56.815	0.15602	56.815	56.737	56.893	0					4	2	2	0	0	0	0.14972	1	21881	21881		48.346	0	1	15182000			30855	6672	19403	19508	29719	29719					0.04123518491860523
SLIEGYISL	9	Unmodified	_SLIEGYISL_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MATCH	HCT116MG_D190212_S2	2		1	994.545539	993.538263	0.74547	0.0007414	-0.3822	-0.00038012	0.36327	0.00036129	994.5451013070679	56.997	0.15574	56.818	56.739	56.895	-0.17904	0.0012473	-6.4138E-05	NaN	48.346	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13434000			30856	6672	19403	19508							0.04123518491860523
SLIEKNETTL	10	Unmodified	_SLIEKNETTL_					0	0	0			REV__SETDB2|p.G380Vfs*5|1|0.17|ENSG00000136169|chr13:49481060-49481060|G/-|frameshift_variant	REV__SETDB2|p.G380Vfs*5|1|0.17|ENSG00000136169|chr13:49481060-49481060|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	574.3143920898438	2	574.313886	1146.61322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.396	1	44.311	43.811	44.811	-0.084797								0	0	0	0.91279	1	16859	16859		13.042	1.4022	1		+		30857	12122	19404	19509	29720	29720					0.04577656232413574
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MSMS	HCT116MG_D190212_S1	1	491.7909240722656	2	491.290017	980.565481	0.23281	0.00011438	-0.17395	-8.546E-05	0.05886	2.8917E-05	491.28986773249164	48.897	0.206	48.897	48.768	48.974	0					8	3	3	0	0	0	0.012596	1	18631	18631		106.94	40.483	1	25449000			30858	3538	19405	19510	29721	29721					0.07442046822893644
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MSMS	HCT116MG_D190212_S2	2	491.2900695800781	2	491.290017	980.565481	0.28167	0.00013838	-0.19337	-9.5003E-05	0.088297	4.3379E-05	491.2898405286677	48.995	0.25214	48.841	48.682	48.935	-0.15405					10	4	3	0	0	0	0.0035136	1	18746	18746		168.54	72.171	1	83270000			30859	3538	19405	19510	29722	29722					0.07442046822893644
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MSMS	HCT116MG_D190212_S3	3	491.2901611328125	2	491.290017	980.565481	0.20124	9.8868E-05	0.071008	3.4886E-05	0.27225	0.00013375	491.28990238824014	49.212	0.31703	48.896	48.71	49.027	-0.31596					11	5	3	0	0	0	0.0034865	1	18530	18530		165.72	47.652	1	10485000			30860	3538	19405	19510	29723	29723					0.07442046822893644
SLIGKGVML	9	Unmodified	_SLIGKGVML_					0	0	0		ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MSMS	HCT116MG_D190212_S3	3	459.2799987792969	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.305	1	48.989	48.489	49.489	-0.31596								0	0	0	0.76902	1	18564	18564		4.3292	0	1				30861	6459	19406	19511	29724	29724					0.07996490064874706
SLIGKRTR	8	Unmodified	_SLIGKRTR_					0	0	0			REV__SRRM5|p.N342Tfs*345|1|0.39|ENSG00000226763|chr19:43613143-43613143|A/-|frameshift_variant	REV__SRRM5|p.N342Tfs*345|1|0.39|ENSG00000226763|chr19:43613143-43613143|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	465.286865234375	2	465.795801	929.577048	0.071499	3.3304E-05	-0.39721	-0.00018502	-0.32572	-0.00015172	465.79590894870387	55.332	0.41689	55.014	54.719	55.136	-0.31774					10	7	2	0	0	0	0.33109	1	20733	20733		5.2307	0	1	3939000	+		30862	14312	19407	19512	29725	29725					0.10944288636881083
SLIGSSNGSF	10	Unmodified	_SLIGSSNGSF_					0	0	0		ENST00000392845.7_1_3:155551329-155560245:-|nuORF	ENST00000392845.7_1_3:155551329-155560245:-|nuORF	ENST00000392845.7_1_3:155551329-155560245:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	484.7503662109375	2	484.737814	967.461075	0.080258	3.8904E-05	0.32506	0.00015757	0.40532	0.00019647	484.73805530603386	38.54	0.2599	38.238	38.092	38.352	-0.30137					7	4	2	0	0	0	0.2916	1	14317	14317		22.736	7.898	1	4570600			30863	7618	19408	19513	29726	29726					-0.023956997244681588
SLIKVFTSKGA	11	Unmodified	_SLIKVFTSKGA_					0	0	0			REV__tr|U7SPU9|U7SPU9_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01710PE=4SV=1	REV__tr|U7SPU9|U7SPU9_FUSNUABCtransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01710PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	575.8436279296875	2	575.845156	1149.67576	0.65997	0.00038004	-1.7498	-0.0010076	-1.0899	-0.00062759	576.3460056417337	48.063	1.1833	47.93	46.911	48.095	-0.13281					33	22	2	0	0	0	0.73981	1	18188	18188		7.1017	0.37856	1	106300000	+		30864	17750	19409	19514	29727	29727					0.10690847091314026
SLIKVILLLYQ	11	Unmodified	_SLIKVILLLYQ_					0	0	0			REV__ENST00000426918.2_1_9:125719318-125748500:+|nuORF	REV__ENST00000426918.2_1_9:125719318-125748500:+|nuORF	MSMS	HCT116MG_D190212_S3	3	651.9251708984375	2	651.923406	1301.83226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.307	1	57.028	56.528	57.528	-0.27913								0	0	0	0.95954	1	21775	21775		1.3295	0	1		+		30865	15194	19410	19515	29728	29728					0.1934171226178023
SLILILEIFL	10	Unmodified	_SLILILEIFL_					0	0	0		ENST00000341166.3_1_8:99205208-99215350:-|nuORF	ENST00000341166.3_1_8:99205208-99215350:-|nuORF	ENST00000341166.3_1_8:99205208-99215350:-|nuORF	MSMS	HCT116MG_D190212_S2	2	587.376708984375	2	587.3783	1172.74205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.279	1	37.176	36.676	37.676	-0.10318								0	0	0	0.86471	1	13968	13968		20.454	1.1966	1				30866	7217	19411	19516	29729	29729					0.16258662933296364
SLIRNLEQL	9	Unmodified	_SLIRNLEQL_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000601061.1_1_19:7710099-7712134:+|nuORF;ENST00000593854.5_1_19:7709481-7711320:+|nuORF	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-SECPEP	HCT116MG_D190212_S2	2	543.0035400390625	2	543.319306	1084.62406	0.48455	0.00026327	-0.2723	-0.00014795	0.21225	0.00011532	543.3189137070983	51.428	0.25801	51.249	51.12	51.378	-0.17868					8	4	3	0	0	0	0.12796	1	19737	19737		59.368	19.419	1	35448000			30867	1343	19412	19517	29730	29730					0.08513103397376653
SLITDKDTAY	10	Unmodified	_SLITDKDTAY_					0	0	0		DOCK11|p.S1216I|1|0.28|ENSG00000147251|chrX:118627562-118627562|G/T|missense_variant	DOCK11|p.S1216I|1|0.28|ENSG00000147251|chrX:118627562-118627562|G/T|missense_variant	DOCK11|p.S1216I|1|0.28|ENSG00000147251|chrX:118627562-118627562|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	563.5509643554688	2	563.784961	1125.55537	0.42724	0.00024087	0.17771	0.00010019	0.60494	0.00034106	563.7849814303356	55.131	0.30481	54.943	54.765	55.07	-0.18797					11	5	3	0	0	0	0.76634	1	21279	21279		14.838	4.0143	1	138960000			30868	721	19413	19518	29731	29731					-0.0023860569301632495
SLITHPGLRLY	11	Unmodified	_SLITHPGLRLY_					0	0	0			REV__ENSG00000162461|ENST00000294454|SLC25A34	REV__ENSG00000162461|ENST00000294454|SLC25A34	MSMS	HCT116MG_D190212_S3	3	635.8370361328125	2	635.36933	1268.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.887	1	52.58	52.08	53.08	-0.30639								0	0	0	0.95686	1	20004	20004		2.7352	1.0826	1		+		30869	12877	19414	19519	29732	29732					0.10049340731166012
SLKIEKVLLNA	11	Unmodified	_SLKIEKVLLNA_					0	0	0		tr|U7SVU1|U7SVU1_FUSNUAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatCPE=3SV=1	tr|U7SVU1|U7SVU1_FUSNUAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatCPE=3SV=1	tr|U7SVU1|U7SVU1_FUSNUAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=gatCPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	614.3875122070312	2	614.387188	1226.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.641	1	43.335	42.835	43.835	-0.30616								0	0	0	0.92235	1	16290	16290		17.113	4.8722	1				30870	18496	19415	19520	29733	29733					0.155513781882064
SLKIFFRYLTN	11	Unmodified	_SLKIFFRYLTN_					0	0	0			REV__ENST00000460138.5_1_6:7883179-7883239:-|nuORF	REV__ENST00000460138.5_1_6:7883179-7883239:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	701.6482543945312	2	701.398087	1400.78162	1.0092	0.00070787	-1.8554	-0.0013014	-0.8462	-0.00059352	701.8987573312266	28.825	0.1567	28.825	28.746	28.903	0					4	2	2	0	0	0	0.74191	1	10541	10541		4.1895	1.1943	1	7689000	+		30871	15769	19416	19521	29734	29734					0.09726182936742589
SLKIISKQKL	10	Unmodified	_SLKIISKQKL_					0	0	0			REV__ENSG00000150667|ENST00000350221|FSIP1	REV__ENSG00000150667|ENST00000350221|FSIP1	MSMS	HCT116MG_D190212_S2	2	579.3861694335938	2	579.384448	1156.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.841	1	49.677	49.177	50.177	-0.16369								0	0	0	0.93202	1	19087	19087		8.7454	0	1		+		30872	12585	19417	19522	29735	29735					0.1822369939636701
SLKKHFFI	8	Unmodified	_SLKKHFFI_					0	0	0		ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.8033752441406	2	510.30547	1018.59639	0.35386	0.00018058	-0.2246	-0.00011461	0.12926	6.5963E-05	510.30528846445367	45.05	0.26041	45.05	44.931	45.192	0					7	4	2	0	0	0	0.31507	1	17066	17066		2.3027	0	1	5150100			30873	6088	19418	19523	29736	29736					0.08783244927803935
SLKKSRIKQ	9	Unmodified	_SLKKSRIKQ_					0	0	0			REV__ENST00000468653.5_1_3:160117521-160130242:+|nuORF	REV__ENST00000468653.5_1_3:160117521-160130242:+|nuORF	MSMS	HCT116MG_D190212_S1	1	544.3492431640625	2	544.35094	1086.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.824	1	37.824	37.324	38.324	0								0	0	0	0.76849	1	14143	14143		6.2058	1.4498	1		+		30874	11496	19419	19524	29737	29737					0.14745088905260673
SLKLKVVP	8	Unmodified	_SLKLKVVP_					0	0	0		TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant;nc|ENSG00000143155|O75663-2|TIPRL;ENSG00000143155|ENST00000367833|TIPRL	TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant	TIPRL|p.F156Lfs*13|1|0.33|ENSG00000143155|chr1:168191448-168191448|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	442.3012390136719	2	442.302396	882.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.807	1	26.657	26.157	27.157	-0.14924								0	0	0	0.8837	1	9633	9633		4.3292	1.44	1				30875	3787	19420	19525	29738	29738					0.14424726696267953
SLKLRRVRGLQ	11	Unmodified	_SLKLRRVRGLQ_					0	0	0		ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MSMS	HCT116MG_D190212_S2	2	663.2002563476562	2	663.428045	1324.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.212	1	39.134	38.634	39.634	-0.077835								0	0	0	0.95636	1	14751	14751		2.9952	0.49676	1				30876	7770	19421	19526	29739	29739					0.19210918390649567
SLKPSRSR	8	Unmodified	_SLKPSRSR_					0	0	0		ENSG00000103404|ENST00000219689|USP31;nc|ENSG00000103404|Q70CQ4-2|USP31	ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	MULTI-MSMS	HCT116MG_D190212_S2	2	465.77777099609375	2	465.777608	929.540663	0.29601	0.00013787	-0.07665	-3.5702E-05	0.21936	0.00010217	465.7774909331557	44.576	2.1251	44.491	43.498	45.623	-0.084801					60	40	2	0	0	0	0.79834	1	17182	17182		11.64	0	1	30977000			30877	1893	19422	19527	29740	29740					0.07307411740180214
SLKQPGPLQK	10	Unmodified	_SLKQPGPLQK_					0	0	0			REV__SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant	REV__SPATA31A1|p.T1192Qfs*2|2|0.24|ENSG00000204849|chr9:39361334-39361334|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	548.32763671875	2	548.329673	1094.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.189	1	42.189	41.689	42.689	0								0	0	0	0.93938	1	15906	15906		7.1017	0.89594	1		+		30878	14209	19423	19528	29741	29741					0.10125693777035849
SLLAQKIEV	9	Unmodified	_SLLAQKIEV_					0	0	0		ENST00000480260.1_1_3:183899436-183900037:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF;AP2M1|p.I386Hfs*6|1|0.17|ENSG00000161203|chr3:184182844-184182845|-/C|frameshift_variant;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1	ENST00000480260.1_1_3:183899436-183900037:+|nuORF	ENST00000480260.1_1_3:183899436-183900037:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	500.8055419921875	2	500.8055	999.596446	0.5182	0.00025952	-0.17575	-8.8018E-05	0.34245	0.0001715	500.80521677376635	48.76	0.20312	48.616	48.54	48.743	-0.1437					5	3	2	0	0	0	0.15894	1	18677	18677		24.021	6.9077	1	33343000			30879	150	19424	19529	29742	29742					0.09663200137140393
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168;TMEM168|p.T574Nfs*5|1|0.09|ENSG00000146802|chr7:112767570-112767571|-/T|frameshift_variant	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	HCT116MG_D190212_S1	1	465.2869567871094	2	465.286943	928.559333	0.27937	0.00012999	-0.22213	-0.00010336	0.05724	2.6633E-05	465.2867718957536	55.07	0.25472	55.07	54.892	55.146	0					8	4	3	0	0	0	0.02258	1	21139	21139		115.69	5.1393	1	204970000			30880	3960	19425	19530	29743	29743					0.09219528591370363
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168;TMEM168|p.T574Nfs*5|1|0.09|ENSG00000146802|chr7:112767570-112767571|-/T|frameshift_variant	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	HCT116MG_D190212_S2	2	465.2870788574219	2	465.286943	928.559333	0.19473	9.0604E-05	0.037559	1.7476E-05	0.23229	0.00010808	465.2869364351711	55.232	0.35569	55.044	54.918	55.273	-0.18797					16	6	4	0	0	0	0.016539	1	21286	21286		128.37	6.8313	1	1657799999.9999998			30881	3960	19425	19530	29744	29744					0.09219528591370363
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		nc|ENSG00000162378|Q9C0D3-2|ZYG11B;ENSG00000162378|ENST00000294353|ZYG11B	nc|ENSG00000162378|Q9C0D3-2|ZYG11B	nc|ENSG00000162378|Q9C0D3-2|ZYG11B	MULTI-MSMS	HCT116MG_D190212_S2	2	485.7455749511719	2	485.745639	969.476725	0.65319	0.00031728	-0.35638	-0.00017311	0.29681	0.00014417	485.74544023916883	46.814	0.25697	46.703	46.574	46.831	-0.11121					7	4	2	0	0	0	0.12994	1	17870	17870		52.268	10.429	1	27608000			30882	4515	19426	19531	29745	29745					-0.009234132074311674
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		nc|ENSG00000162378|Q9C0D3-2|ZYG11B;ENSG00000162378|ENST00000294353|ZYG11B	nc|ENSG00000162378|Q9C0D3-2|ZYG11B	nc|ENSG00000162378|Q9C0D3-2|ZYG11B	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	485.745639	969.476725	0.18347	8.9119E-05	-0.094593	-4.5948E-05	0.088876	4.3171E-05	485.7455327955089	47.038	0.20853	46.724	46.594	46.802	-0.31405	0.010752	6.9221E-05	NaN	52.268	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4417600			30883	4515	19426	19531							-0.009234132074311674
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S1	1	564.3026733398438	2	564.30279	1126.59103	0.31591	0.00017827	0.31672	0.00017873	0.63263	0.00035699	564.3029117632818	57.334	0.31168	57.334	57.152	57.464	0					13	5	3	0	0	0	0.0063854	1	22066	22066		125.53	61.293	1	113730000			30884	3346	19427	19532	29746	29746					0.032794765546668714
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	564.302978515625	2	564.30279	1126.59103	0.52334	0.00029532	0.046755	2.6384E-05	0.57009	0.0003217	564.3027391486801	57.516	0.20755	57.341	57.211	57.418	-0.17494					9	3	3	0	0	0	0.0050238	1	22211	22211		137.42	73.188	1	229750000			30885	3346	19427	19532	29747	29747					0.032794765546668714
SLLDEVLN	8	Unmodified	_SLLDEVLN_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	HCT116MG_D190212_S3	3	903.4856567382812	1	902.482939	901.475663	0.75608	0.00068234	0.19017	0.00017163	0.94625	0.00085397	902.482884019422	51.315	0.41983	51.003	50.805	51.225	-0.31166					14	7	3	0	0	0	0.10511	1	19371	19371		93.883	0	1	13679000			30886	4585	19428	19533	29748	29748					0.020983724236771195
SLLDGVVEKL	10	Unmodified	_SLLDGVVEKL_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.660888671875	2	536.816064	1071.61758	0.46901	0.00025177	1.6147	0.00086679	2.0837	0.0011186	536.8161560389649	55.294	0.30452	55.106	54.867	55.171	-0.18797					10	5	3	0	0	0	0.15926	1	21309	21309		83.278	33.723	1	36850000			30887	1539;9398	19429	19534	29749	29749					0.08463165446005405
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	929.5675048828125	1	929.566609	928.559333	0.92582	0.00086061	0.18494	0.00017192	1.1108	0.0010325	929.5666424848821	55.232	0.20299	55.044	54.918	55.121	-0.18797					8	3	3	0	0	0	0.011132	1	21296	21296		110.55	6.8044	1	213110000			30888	5458	19430	19535	29750	29750					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	465.2868957519531	2	465.286943	928.559333	0.34461	0.00016034	-0.3045	-0.00014168	0.040111	1.8663E-05	465.28670725534715	55.297	0.369	55.005	54.874	55.243	-0.2918					12	6	3	0	0	0	0.01405	1	20994	20994		103.35	2.982	1	84417000			30889	5458	19430	19535	29751	29751					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	929.566609	928.559333	0.9746	0.00090596	-0.40669	-0.00037804	0.56791	0.00052791	929.5662772944379	55.297	0.15682	55.005	54.927	55.083	-0.2918	-0.01962	-0.00041208	NaN	110.55	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7445300			30890	5458	19430	19535							0.09219528591370363
SLLDLEQKL	9	Unmodified	_SLLDLEQKL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-MSMS	HCT116MG_D190212_S1	1	529.808349609375	2	529.808239	1057.60193	0.42563	0.0002255	-0.09365	-4.9617E-05	0.33198	0.00017589	529.8081774395877	53.437	0.25794	53.437	53.307	53.565	0					7	4	2	0	0	0	0.0046822	1	20479	20479		140.63	25.984	1	28293000			30891	979	19431	19536	29752	29752					0.07542878928961727
SLLDLEQKL	9	Unmodified	_SLLDLEQKL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-MSMS	HCT116MG_D190212_S2	2	529.80859375	2	529.808239	1057.60193	0.31847	0.00016873	0.061901	3.2795E-05	0.38037	0.00020153	529.8083207823839	53.696	0.25841	53.506	53.377	53.636	-0.1894					7	4	2	0	0	0	3.8859E-05	1	20661	20661		209.87	41.212	1	52548000			30892	979	19431	19536	29753	29753					0.07542878928961727
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;MYO1B|p.S730Afs*4|2|0.4|ENSG00000128641|chr2:191393178-191393178|A/-|frameshift_variant;MYO1B|p.A603Sfs*37|1|0.42|ENSG00000128641|chr2:191390310-191390311|-/A|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	MYO1B|p.F948Cfs*47|1|0.41|ENSG00000128641|chr2:191411140-191411141|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	481.25482177734375	2	481.254785	960.495018	0.27243	0.00013111	0.0014117	6.7941E-07	0.27384	0.00013179	481.25464557646774	57.36	0.20767	57.185	57.055	57.263	-0.17494					7	3	3	0	0	0	0.010304	1	22151	22151		112.59	68.735	1	17707000			30893	3004;8167	19432	19537	29754	29754					0.013190054429401243
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S2	2	968.5304565429688	1	968.529889	967.522613	0.62108	0.00060153	0.17385	0.00016837	0.79492	0.0007699	968.5300051875363	54.927	0.30697	54.739	54.56	54.867	-0.18797					11	5	3	0	0	0	0.003294	1	21166	21166		180.01	23.854	1	81879000			30894	1517	19433	19538	29755	29755					0.03755231974810158
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S3	3	968.5304565429688	1	968.529889	967.522613	0.58072	0.00056245	-0.23679	-0.00022934	0.34393	0.00033311	968.52986630605	55.087	0.20935	54.796	54.665	54.874	-0.2918					8	3	3	0	0	0	0.0040473	1	20896	20896		149.99	8.168	1	6558800			30895	1517	19433	19538	29756	29756					0.03755231974810158
SLLDSVVGL	9	Unmodified	_SLLDSVVGL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	HCT116MG_D190212_S1	1	902.5198364257812	1	902.519325	901.512048	0.66502	0.0006002	0.15139	0.00013663	0.81641	0.00073683	902.5193546883826	57.593	0.20726	57.593	57.464	57.671	0					5	3	2	0	0	0	0.019399	1	22174	22174		97.075	0	1	25928000			30896	4735	19434	19539	29757	29757					0.057352493203779886
SLLDSVVGL	9	Unmodified	_SLLDSVVGL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	HCT116MG_D190212_S2	2	902.5201416015625	1	902.519325	901.512048	0.93797	0.00084653	0.076659	6.9186E-05	1.0146	0.00091572	902.5191530492323	57.775	0.31331	57.6	57.469	57.783	-0.17494					13	5	4	0	0	0	0.014796	1	22336	22336		101.72	12.295	1	62832000			30897	4735	19434	19539	29758	29758					0.057352493203779886
SLLEDGTHV	9	Unmodified	_SLLEDGTHV_					0	0	0			REV__PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant	REV__PHKB|p.L392*|1|0.37|ENSG00000102893|chr16:47594182-47594182|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	485.7456970214844	2	485.745639	969.476725	0.18347	8.9119E-05	-0.094593	-4.5948E-05	0.088876	4.3171E-05	485.7455327955089	47.038	0.20853	46.724	46.594	46.802	-0.31405					6	3	2	0	0	0	0.2682	1	17683	17683		34.102	1.797	1	4417600	+		30898	11166	19435	19540	29759	29759					-0.009234132074311674
SLLEERFRV	9	Unmodified	_SLLEERFRV_					0	0	0		ENSG00000005075|ENST00000292614|POLR2J;ENST00000326391.6_1_7:44054045-44058742:-|nuORF	ENSG00000005075|ENST00000292614|POLR2J	ENSG00000005075|ENST00000292614|POLR2J	MULTI-MSMS	HCT116MG_D190212_S1	1	574.8250732421875	2	574.824755	1147.63496	0.26352	0.00015148	0.22851	0.00013135	0.49203	0.00028283	574.8249219910198	44.33	0.21505	44.33	44.195	44.41	0					6	3	2	0	0	0	0.07468	1	16792	16792		63.227	31.959	1	16537000			30899	808	19436	19541	29760	29760					0.06704505771654112
SLLEERFRV	9	Unmodified	_SLLEERFRV_					0	0	0		ENSG00000005075|ENST00000292614|POLR2J;ENST00000326391.6_1_7:44054045-44058742:-|nuORF	ENSG00000005075|ENST00000292614|POLR2J	ENSG00000005075|ENST00000292614|POLR2J	MULTI-MSMS	HCT116MG_D190212_S2	2	574.8251953125	2	574.824755	1147.63496	0.27127	0.00015593	-0.27198	-0.00015634	-0.00071267	-4.0966E-07	574.8245117681123	44.333	0.31389	44.249	44.115	44.428	-0.084797					7	5	2	0	0	0	0.025331	1	16842	16842		91.085	47.312	1	35077000			30900	808	19436	19541	29761	29761					0.06704505771654112
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	MULTI-MSMS	HCT116MG_D190212_S1	1	480.29217529296875	2	480.292225	958.569897	-0.066028	-3.1713E-05	0.45894	0.00022042	0.39291	0.00018871	480.2924333992757	50.631	0.36128	50.631	50.42	50.781	0					14	6	4	0	0	0	0.0041644	1	19314	19314		148.27	11.935	1	158990000			30901	2867	19437	19542	29762	29762					0.08895511245816579
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	MULTI-MSMS	HCT116MG_D190212_S2	2	480.29205322265625	2	480.292225	958.569897	0.22357	0.00010738	0.02705	1.2992E-05	0.25062	0.00012037	480.29217998761817	50.756	0.67382	50.585	50.351	51.025	-0.1719					30	12	5	0	0	0	0.0041644	1	19452	19452		148.27	19.903	1	450530000			30902	2867	19437	19542	29763	29763					0.08895511245816579
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	MULTI-MSMS	HCT116MG_D190212_S2	2	959.5780639648438	1	959.577174	958.569897	0.64623	0.00062011	0.30882	0.00029633	0.95504	0.00091644	959.5776218965296	50.805	0.41421	50.633	50.351	50.765	-0.17191					14	7	3	0	0	0	0.0059958	1	19467	19467		128.93	25.184	1	68084000			30903	2867	19437	19542	29764	29764					0.08895511245816579
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	nc|ENSG00000124802|O43324-2|EEF1E1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	480.292225	958.569897	0.18045	8.6668E-05	-0.146	-7.0122E-05	0.034448	1.6545E-05	480.29215021845323	50.986	0.20895	50.672	50.542	50.751	-0.31381	0.042706	-0.00027621	NaN	148.27	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11287000			30904	2867	19437	19542							0.08895511245816579
SLLEWPAYP	9	Unmodified	_SLLEWPAYP_					0	0	0			REV__ENSG00000135625|ENST00000436467|EGR4	REV__ENSG00000135625|ENST00000436467|EGR4	MSMS	HCT116MG_D190212_S2	2	538.27783203125	2	538.276575	1074.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.987	1	39.915	39.415	40.415	-0.072838								0	0	0	0.76781	1	15068	15068		8.5933	0	1		+		30905	12102	19438	19543	29765	29765					0.004309382117071436
SLLFVAVSW	9	Unmodified	_SLLFVAVSW_					0	0	0			REV__nc|ENSG00000087494|P12272-2|PTHLH	REV__nc|ENSG00000087494|P12272-2|PTHLH	MULTI-MSMS	HCT116MG_D190212_S1	1	511.2889709472656	2	511.289485	1020.56442	0.44633	0.0002282	-2.6566	-0.0013583	-2.2103	-0.0011301	511.2884583080319	46.916	0.20701	46.916	46.803	47.01	0					5	3	2	0	0	0	0.41514	1	17836	17836		21.747	2.4897	1	7498600	+		30906	10951	19439	19544	29766	29766					0.054958324539938985
SLLFVAVSW	9	Unmodified	_SLLFVAVSW_					0	0	0			REV__nc|ENSG00000087494|P12272-2|PTHLH	REV__nc|ENSG00000087494|P12272-2|PTHLH	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	511.289485	1020.56442	0.44633	0.0002282	-2.6566	-0.0013583	-2.2103	-0.0011301	511.2884583080319	46.916	0.20701	46.916	46.803	47.01	0	0	0	NaN	21.747	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7498600	+		30907	10951	19439	19544							0.054958324539938985
SLLGDLAMYNT	11	Unmodified	_SLLGDLAMYNT_					0	0	0			REV__ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant	REV__ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	599.2946166992188	2	599.294639	1196.57472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.718	1	54.529	54.029	55.029	-0.1894								0	0	0	0.93295	1	21074	21074		15.248	1.3424	1		+		30908	10904	19440	19545	29767	29767					-0.015699726737466335
SLLGGDVVSV	10	Unmodified	_SLLGGDVVSV_					0	0	0		nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	MULTI-MSMS	HCT116MG_D190212_S2	2	945.527099609375	1	945.525138	944.517862	0.77049	0.00072851	0.85967	0.00081284	1.6302	0.0015414	945.5256905838108	52.56	0.25897	52.373	52.244	52.503	-0.18725					7	4	2	0	0	0	0.029196	1	20216	20216		103.75	41.176	1	23982000			30909	9508	19441	19546	29768	29768					0.04338347832049294
SLLGGDVVSV	10	Unmodified	_SLLGGDVVSV_					0	0	0		nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	MULTI-MSMS	HCT116MG_D190212_S3	3	945.5261840820312	1	945.525138	944.517862	0.80217	0.00075847	0.68507	0.00064775	1.4872	0.0014062	945.5248191934414	52.841	0.26123	52.535	52.352	52.613	-0.30639					7	4	2	0	0	0	0.095673	1	19993	19993		74.929	22.661	1	5597000			30910	9508	19441	19546	29769	29769					0.04338347832049294
SLLGKKYV	8	Unmodified	_SLLGKKYV_					0	0	0		FHL5|p.E156*|1|0.31|ENSG00000112214|chr6:96606028-96606029|-/T|frameshift_variant;ENSG00000112214|ENST00000450218|FHL5	FHL5|p.E156*|1|0.31|ENSG00000112214|chr6:96606028-96606029|-/T|frameshift_variant	FHL5|p.E156*|1|0.31|ENSG00000112214|chr6:96606028-96606029|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	453.936767578125	2	454.284203	906.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.899	1	52.899	52.399	53.399	0								0	0	0	0.8837	1	20245	20245		2.5775	0	1				30911	2334	19442	19547	29770	29770					0.0968384979955772
SLLGTENASV	10	Unmodified	_SLLGTENASV_					0	0	0		ENST00000487881.2_1_13:45010128-45010713:-|nuORF;nc|ENSG00000102804|Q15714-2|TSC22D1	ENST00000487881.2_1_13:45010128-45010713:-|nuORF	ENST00000487881.2_1_13:45010128-45010713:-|nuORF	MSMS	HCT116MG_D190212_S2	2	495.7588806152344	2	495.758746	989.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.813	1	41.745	41.245	42.245	-0.068199								0	0	0	0.75242	1	15810	15810		34.932	8.6639	1				30912	8308	19443	19548	29771	29771					0.007768559640453532
SLLGTLRPS	9	Unmodified	_SLLGTLRPS_					0	0	0		ENST00000407479.5_1_16:3712726-3712951:+|nuORF	ENST00000407479.5_1_16:3712726-3712951:+|nuORF	ENST00000407479.5_1_16:3712726-3712951:+|nuORF	MSMS	HCT116MG_D190212_S1	1	472.2833557128906	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.552	1	54.552	54.052	55.052	0								0	0	0	0.76759	1	20923	20923		9.3831	1.473	1				30913	7721	19444	19549	29772	29772					0.07625760305847962
SLLHLGALYGI	11	Unmodified	_SLLHLGALYGI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	HCT116MG_D190212_S2	2	578.8399658203125	2	578.839874	1155.66519	0.5177	0.00029966	0.027401	1.5861E-05	0.5451	0.00031552	578.839683395084	56.787	0.15905	56.608	56.528	56.687	-0.17904					6	2	3	0	0	0	0.3975	2	21940	21927;21940		78.728	42.222	1	32412000			30914	1629	19445	19550	29773;29774	29774					0.09358864436876502
SLLIFVGLKSV	11	Unmodified	_SLLIFVGLKSV_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|204|1|anti-sense;chr15:53523322-53540662|232|17.27|0.17|6.68|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|78	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|204|1|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|204|1|anti-sense	MSMS	HCT116MG_D190212_S1	1	588.376220703125	2	588.373549	1174.73255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.065	1	36.065	35.565	36.565	0								0	0	0	0.94755	1	13436	13436		7.609	0	1				30915	450	19446	19551	29775	29775					0.15216894647778645
SLLIFVGLKSV	11	Unmodified	_SLLIFVGLKSV_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|204|1|anti-sense;chr15:53523322-53540662|232|17.27|0.17|6.68|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|78	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|204|1|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|204|1|anti-sense	MSMS	HCT116MG_D190212_S1	1	588.2850341796875	2	588.373549	1174.73255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.634	1	36.634	36.134	37.134	0								0	0	0	0.94851	1	13662	13662		7.1017	4.1065	1				30916	450	19446	19551	29776	29776					0.15216894647778645
SLLIFVGLKSV	11	Unmodified	_SLLIFVGLKSV_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|204|1|anti-sense;chr15:53523322-53540662|232|17.27|0.17|6.68|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|78	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|204|1|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|1.892281258594111|0.2637255971055219|2.84|482.0|204|1|anti-sense	MSMS	HCT116MG_D190212_S1	1	588.3760986328125	2	588.373549	1174.73255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.663	1	37.663	37.163	38.163	0								0	0	0	0.95343	1	14078	14078		4.5289	0	1				30917	450	19446	19551	29777	29777					0.15216894647778645
SLLKPDEKY	9	Unmodified	_SLLKPDEKY_					0	0	0			REV__ENSG00000136813|ENST00000684092|ECPAS	REV__ENSG00000136813|ENST00000684092|ECPAS	MSMS	HCT116MG_D190212_S2	2	546.8003540039062	2	546.800414	1091.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.872	1	45.771	45.271	46.271	-0.1014								0	0	0	0.76575	1	17457	17457		15.847	0	1		+		30918	12143	19447	19552	29778	29778					0.04414592411899321
SLLKVFCII	9	Unmodified	_SLLKVFCII_					0	0	0		L1M2_dup4231|chr7:155968542-155968983:+|4.120048319926696|0.1764610938163524|4.55|482.0|20|1|anti-sense	L1M2_dup4231|chr7:155968542-155968983:+|4.120048319926696|0.1764610938163524|4.55|482.0|20|1|anti-sense	L1M2_dup4231|chr7:155968542-155968983:+|4.120048319926696|0.1764610938163524|4.55|482.0|20|1|anti-sense	MULTI-MSMS	HCT116MG_D190212_S1	1	518.611328125	2	518.317189	1034.61982	0.48005	0.00024882	-0.40813	-0.00021154	0.071923	3.7279E-05	518.3169596521744	52.859	0.71902	52.859	52.434	53.153	0					20	13	3	0	0	0	0.70732	1	20058	20058		4.756	0.42677	1	55337000			30919	9275	19448	19553	29779	29779					0.10389922650119843
SLLLHLRPF	9	Unmodified	_SLLLHLRPF_					0	0	0		nc|ENSG00000174038|Q5VYM1-3|SPATA31G1;nc|ENSG00000174038|Q5VYM1-2|SPATA31G1;ENSG00000174038|ENST00000312292|C9orf131	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MSMS	HCT116MG_D190212_S4	4	548.291015625	2	548.337301	1094.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.54	1	42.164	41.664	42.664	-0.37565								0	0	0	0.7689	1	15639	15639		4.756	0.42677	1				30920	5317	19449	19554	29780	29780					0.11650605364911826
SLLLLLLLLQ	10	Unmodified	_SLLLLLLLLQ_					0	0	0		DPEP2|p.R41Qfs*26|2|0.25|ENSG00000167261|chr16:67993092-67993093|-/G|frameshift_variant;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;nc|ENSG00000167261|Q9H4A9-3|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000167261|ENST00000393847|DPEP2	DPEP2|p.R41Qfs*26|2|0.25|ENSG00000167261|chr16:67993092-67993093|-/G|frameshift_variant	DPEP2|p.R41Qfs*26|2|0.25|ENSG00000167261|chr16:67993092-67993093|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	380.20037841796875	3	380.265171	1137.77368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.112	1	60.112	59.612	60.612	0								0	0	0	0.96804	1	23164	23164		0.69767	0.24315	1				30921	727	19450	19555	29781	29781					0.21030655687286526
SLLLLLLLLQ	10	Unmodified	_SLLLLLLLLQ_					0	0	0		DPEP2|p.R41Qfs*26|2|0.25|ENSG00000167261|chr16:67993092-67993093|-/G|frameshift_variant;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;nc|ENSG00000167261|Q9H4A9-3|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000167261|ENST00000393847|DPEP2	DPEP2|p.R41Qfs*26|2|0.25|ENSG00000167261|chr16:67993092-67993093|-/G|frameshift_variant	DPEP2|p.R41Qfs*26|2|0.25|ENSG00000167261|chr16:67993092-67993093|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	380.2643127441406	3	380.265171	1137.77368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.095	1	61.095	60.595	61.595	0								0	0	0	0.96804	1	23566	23566		0.69767	0.24315	1				30922	727	19450	19555	29782	29782					0.21030655687286526
SLLLPWLEGM	10	Unmodified	_SLLLPWLEGM_					0	0	0			REV__SRRM1|p.P620Lfs*114|1|0.34|ENSG00000133226|chr1:24669238-24669238|C/-|frameshift_variant	REV__SRRM1|p.P620Lfs*114|1|0.34|ENSG00000133226|chr1:24669238-24669238|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	579.53515625	2	579.81501	1157.61547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.216	1	44.138	43.638	44.638	-0.078373								0	0	0	0.92607	1	16788	16788		10.074	0	1		+		30923	12023	19451	19556	29783	29783					0.042964134365320206
SLLLRLLRLH	10	Unmodified	_SLLLRLLRLH_					0	0	0			REV__ENST00000488145.1_1_9:139935475-139940441:-|nuORF	REV__ENST00000488145.1_1_9:139935475-139940441:-|nuORF	MSMS	HCT116MG_D190212_S1	1	617.4109497070312	2	617.411332	1232.80811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.528	1	57.528	57.028	58.028	0								0	0	0	0.96937	1	22139	22139		0.40072	0	1		+		30924	11320	19452	19557	29784	29784					0.20101916618750693
SLLLRQEPP	9	Unmodified	_SLLLRQEPP_					0	0	0			REV__ENST00000596731.5_1_19:12780987-12781230:-|nuORF	REV__ENST00000596731.5_1_19:12780987-12781230:-|nuORF	MSMS	HCT116MG_D190212_S1	1	527.285888671875	2	526.808574	1051.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.839	1	29.839	29.339	30.339	0								0	0	0	0.76641	1	10921	10921		13.508	0	1		+		30925	16723	19453	19558	29785	29785					0.07885718368675043
SLLLVLPVVE	10	Unmodified	_SLLLVLPVVE_					0	0	0		ENSG00000214194|ENST00000397764|SMIM30	ENSG00000214194|ENST00000397764|SMIM30	ENSG00000214194|ENST00000397764|SMIM30	MSMS	HCT116MG_D190212_S4	4	361.23345947265625	3	361.233759	1080.67945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.294	1	34.908	34.408	35.408	-0.38606								0	0	0	0.96337	1	12921	12921		1.7423	0	1				30926	6433	19454	19559	29786	29786					0.1423351686512433
SLLNKKRE	8	Unmodified	_SLLNKKRE_					0	0	0			REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	494.301025390625	2	494.300916	986.587279	0.48895	0.00024169	0.0035024	1.7313E-06	0.49245	0.00024342	494.3008153704718	52.318	1.1854	52.131	51.523	52.708	-0.18726					54	22	4	0	0	0	0.74197	1	19926	19926		18.146	3.3081	1	98159000	+		30927	17751	19455	19560	29787	29787					0.09344851571472645
SLLNKKRE	8	Unmodified	_SLLNKKRE_					0	0	0			REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	REV__tr|U7SPV4|U7SPV4_FUSNUSerineaminopeptidaseS33domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01715PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	494.300916	986.587279	0.48895	0.00024169	0.0035024	1.7313E-06	0.49245	0.00024342	494.3008153704718	52.318	1.1854	52.131	51.523	52.708	-0.18726	0	0	NaN	18.146	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98159000	+		30928	17751	19455	19560							0.09344851571472645
SLLNSSLDLKI	11	Unmodified	_SLLNSSLDLKI_					0	0	0			REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant	REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	601.8534545898438	2	601.853178	1201.6918	1.0661	0.00064161	-0.5526	-0.00033258	0.51346	0.00030903	601.8528150516189	43.661	0.25684	43.582	43.402	43.659	-0.078369					14	4	4	0	0	0	0.038201	1	16563	16563		118.81	27.728	1	134280000	+		30929	12256	19456	19561	29788	29788					0.09902508537516042
SLLNSSLDLKI	11	Unmodified	_SLLNSSLDLKI_					0	0	0			REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant	REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	601.8519897460938	2	601.853178	1201.6918	0.65671	0.00039524	-0.78853	-0.00047458	-0.13182	-7.9337E-05	601.8525868152879	43.881	0.26082	43.575	43.448	43.709	-0.30616					10	4	3	0	0	0	0.1392	1	16396	16396		82.445	17.518	1	10589000	+		30930	12256	19456	19561	29789	29789					0.09902508537516042
SLLNSSLDLKI	11	Unmodified	_SLLNSSLDLKI_					0	0	0			REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant	REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	601.853178	1201.6918	0.3984	0.00023978	-1.006	-0.00060547	-0.60761	-0.00036569	601.8525186737359	43.652	0.20583	43.652	43.524	43.73	0	0.049248	-0.00031761	NaN	118.81	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34148000	+		30931	12256	19456	19561							0.09902508537516042
SLLNSSLDLKI	11	Unmodified	_SLLNSSLDLKI_					0	0	0			REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant	REV__LGR5|p.L643Ffs*31|1|0.44|ENSG00000139292|chr12:71583932-71583933|-/T|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	601.853178	1201.6918	1.0661	0.00064161	-0.5526	-0.00033258	0.51346	0.00030903	601.8528150516189	43.661	0.25684	43.582	43.402	43.659	-0.078369	-0.020764	0.00022817	NaN	118.81	14	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134280000	+		30932	12256	19456	19561							0.09902508537516042
SLLPIVQT	8	Unmodified	_SLLPIVQT_					0	0	0			REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	MULTI-MSMS	HCT116MG_D190212_S3	3	870.5308227539062	1	870.529495	869.522219	1.0544	0.00091791	0.55921	0.00048681	1.6136	0.0014047	870.5300589938752	60.334	2.5318	60.082	58.425	60.957	-0.25233					57	48	2	0	0	0	0.8506	1	22735	22735		5.2307	0	1	7436400	+		30933	11504	19457	19562	29790	29790					0.08223857045629757
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MSMS	HCT116MG_D190212_S1	1	547.826904296875	2	547.826432	1093.63831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.045	1	58.045	57.545	58.545	0								0	0	0	0.86121	1	22349	22349		24.991	9.7425	1				30934	1774	19458	19563	29791	29791					0.0952375582564855
SLLPTEQPRL	10	Unmodified	_SLLPTEQPRL_					0	0	0		ENST00000602622.5_1_16:67693438-67693558:-|nuORF;ENST00000602423.1_1_16:67693438-67694029:-|nuORF;ENST00000602860.5_1_16:67693438-67694150:-|nuORF;ENST00000602945.5_1_16:67692675-67693876:-|nuORF;nc|ENSG00000102977|Q96AP0-2|ACD;ENSG00000102977|ENST00000620761|ACD	ENST00000602622.5_1_16:67693438-67693558:-|nuORF	ENST00000602622.5_1_16:67693438-67693558:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	577.3326416015625	2	577.332413	1152.65027	0.61085	0.00035266	0.3074	0.00017747	0.91825	0.00053014	577.3324215891049	44.853	0.31087	44.768	44.588	44.899	-0.084797					11	5	3	0	0	0	0.27368	1	17075	17075		27.223	0	1	14514000			30935	1863	19459	19564	29792	29792					0.08005372568845814
SLLQIDEKL	9	Unmodified	_SLLQIDEKL_					0	0	0			REV__ENSG00000140015|ENST00000322893|KCNH5	REV__ENSG00000140015|ENST00000322893|KCNH5	MSMS	HCT116MG_D190212_S1	1	529.8084716796875	2	529.808239	1057.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.264	1	55.264	54.764	55.764	0								0	0	0	0.37224	1	21217	21217		34.932	0	1		+		30936	12282	19460	19565	29793	29793					0.07542878928961727
SLLQPPGPLLS	11	Unmodified	_SLLQPPGPLLS_					0	0	0		MBD6|p.R878Pfs*26|1|0.34|ENSG00000166987|chr12:57528369-57528406|GGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACT/-|frameshift_variant;MBD6|p.P931Lfs*15|1|0.41|ENSG00000166987|chr12:57528528-57528528|C/-|frameshift_variant;MBD6|p.G877Afs*69|1|0.53|ENSG00000166987|chr12:57528367-57528367|G/-|frameshift_variant;ENSG00000166987|ENST00000355673|MBD6	MBD6|p.R878Pfs*26|1|0.34|ENSG00000166987|chr12:57528369-57528406|GGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACT/-|frameshift_variant	MBD6|p.R878Pfs*26|1|0.34|ENSG00000166987|chr12:57528369-57528406|GGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACT/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	561.347900390625	2	561.331882	1120.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.921	1	42.921	42.421	43.421	0								0	0	0	0.95343	1	16202	16202		4.5289	0.58447	1				30937	4898	19461	19566	29794	29794					0.09371158199951424
SLLRRRKILL	10	Unmodified	_SLLRRRKILL_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MSMS	HCT116MG_D190212_S4	4	423.29541015625	3	423.294346	1266.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.538	1	59.26	58.76	59.76	-0.27731								0	0	0	0.96937	1	22407	22407		0.13989	0	1		+		30938	12761	19462	19567	29795	29795					0.2384529440141705
SLLRVGWSV	9	Unmodified	_SLLRVGWSV_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7980041503906	2	508.798009	1015.58147	0.21715	0.00011049	-0.65416	-0.00033283	-0.43701	-0.00022235	508.79790649523784	53.387	0.2561	53.198	53.07	53.326	-0.18922					6	4	2	0	0	0	0.11498	1	20557	20557		55.235	1.8306	1	16383000			30939	6438	19463	19568	29796	29796					0.07429753059807354
SLLRVSRLRLL	11	Unmodified	_SLLRVSRLRLL_					0	0	0			REV__ENSG00000116329|ENST00000234961|OPRD1	REV__ENSG00000116329|ENST00000234961|OPRD1	MSMS	HCT116MG_D190212_S1	1	663.5248413085938	2	663.440621	1324.86669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.13	1	47.13	46.63	47.63	0								0	0	0	0.95686	1	17900	17900		2.7352	0	1		+		30940	11583	19464	19569	29797	29797					0.21724973193227015
SLLSAPLGHQL	11	Unmodified	_SLLSAPLGHQL_					0	0	0			REV__ENST00000381588.8_1_13:26795410-26796400:-|nuORF	REV__ENST00000381588.8_1_13:26795410-26796400:-|nuORF	MSMS	HCT116MG_D190212_S1	1	568.3128662109375	2	568.327131	1134.63971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.259	1	44.259	43.759	44.759	0								0	0	0	0.91433	1	16741	16741		18.146	0	1		+		30941	15283	19465	19570	29798	29798					0.07777389914417654
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENSG00000116670|ENST00000376692|MAD2L2	ENSG00000116670|ENST00000376692|MAD2L2	MULTI-MSMS	HCT116MG_D190212_S1	1	513.2849731445312	2	513.284931	1024.55531	0.32998	0.00016937	0.19844	0.00010186	0.52842	0.00027123	513.2847817553613	49.176	0.36285	49.176	48.974	49.337	0					15	6	4	0	0	0	0.0035183	1	18729	18729		157.8	54.047	1	108980000			30942	2525	19466	19571	29799	29799					0.04401439097682669
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENSG00000116670|ENST00000376692|MAD2L2	ENSG00000116670|ENST00000376692|MAD2L2	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7504272460938	2	513.284931	1024.55531	0.11239	5.7686E-05	-0.60513	-0.0003106	-0.49274	-0.00025292	513.2843613866136	49.265	0.35425	49.111	48.985	49.339	-0.15405					14	6	3	0	0	0	0.003706	2	18841	18841;18853		155.03	55.227	1	146190000			30943	2525	19466	19571	29800;29801	29800					0.04401439097682669
SLLTGGLLQV	10	Unmodified	_SLLTGGLLQV_					0	0	0		nc|ENSG00000107890|Q9UPS8-2|ANKRD26;ENSG00000107890|ENST00000376087|ANKRD26;ANKRD26|p.K1234Nfs*19|2|0.18|ENSG00000107890|chr10:27033330-27033330|T/-|frameshift_variant;ANKRD26|p.K1452Rfs*7|1|0.29|ENSG00000107890|chr10:27017653-27017653|T/-|frameshift_variant;ANKRD26|p.N1518Lfs*11|1|0.04|ENSG00000107890|chr10:27014666-27014667|-/AGAATCATAGGAAATAA|frameshift_variant;ANKRD26|p.N1518Ifs*14|1|0.04|ENSG00000107890|chr10:27014665-27014666|-/A|frameshift_variant;ANKRD26|p.Y1555Ifs*2|1|0.28|ENSG00000107890|chr10:27014555-27014556|-/T|frameshift_variant;ANKRD26|p.N1659Kfs*4|1|0.3|ENSG00000107890|chr10:27006939-27006940|-/T|frameshift_variant	nc|ENSG00000107890|Q9UPS8-2|ANKRD26	nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MULTI-MSMS	HCT116MG_D190212_S2	2	500.8059997558594	2	500.8055	999.596446	0.42338	0.00021203	1.0461	0.00052389	1.4695	0.00073592	500.80590910971756	45.323	0.30974	45.23	45.101	45.411	-0.092472					9	5	3	0	0	0	0.35357	1	17269	17269		45.7	0	1	12033000			30944	2135	19467	19572	29802	29802					0.09663200137151762
SLLTRVRK	8	Unmodified	_SLLTRVRK_					0	0	0			REV__nc|ENSG00000141219|Q9BSJ5-3|MTNAP1	REV__nc|ENSG00000141219|Q9BSJ5-3|MTNAP1	MULTI-SECPEP	HCT116MG_D190212_S1	1	487.16595458984375	2	486.819276	971.623999	0.17451	8.4953E-05	0.10623	5.1717E-05	0.28074	0.00013667	486.8190491530031	58.026	0.62071	58.026	57.464	58.085	0					18	11	2	0	0	0	0.33446	1	22325	22325		0.6015	0.6015	1	11464000	+		30945	17149	19468	19573	29803	29803					0.13705148188034855
SLLVEPWKK	9	Unmodified	_SLLVEPWKK_					0	0	0			REV__ENST00000545886.1_1_11:73105264-73105780:+|nuORF	REV__ENST00000545886.1_1_11:73105264-73105780:+|nuORF	MSMS	HCT116MG_D190212_S2	2	367.22259521484375	3	367.221853	1098.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.637	1	5.4889	4.9889	5.9889	-0.14816								0	0	0	0.76973	1	1785	1785		0.96228	0	1		+		30946	10640	19469	19574	29804	29804					0.09835479408138781
SLLWLGQAL	9	Unmodified	_SLLWLGQAL_					0	0	0			REV__ENSG00000149489|ENST00000278833|ROM1	REV__ENSG00000149489|ENST00000278833|ROM1	MSMS	HCT116MG_D190212_S2	2	500.8052673339844	2	500.794935	999.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.077	1	43.003	42.503	43.503	-0.073376								0	0	0	0.047256	1	16323	16323		71.134	2.0287	1		+		30947	12565	19470	19575	29805	29805					0.07551234828292763
SLMEQIPHL	9	Unmodified	_SLMEQIPHL_					0	0	0		CKAP2|p.K606Rfs*14|3|0.38|ENSG00000136108|chr13:52474899-52474899|A/-|frameshift_variant	CKAP2|p.K606Rfs*14|3|0.38|ENSG00000136108|chr13:52474899-52474899|A/-|frameshift_variant	CKAP2|p.K606Rfs*14|3|0.38|ENSG00000136108|chr13:52474899-52474899|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.281005859375	2	534.281334	1066.54812	0.63776	0.00034075	-0.31181	-0.00016659	0.32595	0.00017415	534.281134808994	52.355	0.41229	52.168	51.935	52.347	-0.18725					11	7	2	0	0	0	0.027442	1	20108	20108		88.954	45.096	1	16219000			30948	467	19471	19576	29806	29806					0.017503832255897578
SLMGVSLA	8	Unmodified	_SLMGVSLA_					0	0	0		ENST00000595531.5_1_2:105883140-105883392:-|nuORF	ENST00000595531.5_1_2:105883140-105883392:-|nuORF	ENST00000595531.5_1_2:105883140-105883392:-|nuORF	MSMS	HCT116MG_D190212_S2	2	389.2109069824219	2	389.212389	776.410226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.851	1	27.509	27.009	28.009	-0.34201								0	0	0	0.43258	1	10135	10135		46.921	6.4723	1				30949	9060	19472	19577	29807	29807					0.01307679696969899
SLMKAALDLTY	11	Unmodified	_SLMKAALDLTY_					0	0	0		PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;ENST00000487228.1_1_9:140358686-140358968:-|nuORF;ENST00000492278.5_1_9:140358686-140372604:-|nuORF	PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant	PNPLA7|p.G1083Afs*19|1|0.2|ENSG00000130653|chr9:137463435-137463435|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	613.7778930664062	2	613.328482	1224.64241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.972	1	45.661	45.161	46.161	-0.31147								0	0	0	0.94012	1	17228	17228		11.495	2.9014	1				30950	3091	19473	19578	29808	29808					0.03907477257075698
SLMKKITLL	9	Unmodified	_SLMKKITLL_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	523.2529296875	2	523.835746	1045.65694	0.38091	0.00019953	-0.81325	-0.00042601	-0.43235	-0.00022648	523.8356642991763	46.363	0.20642	46.252	46.162	46.369	-0.11121					5	3	2	0	0	0	0.20204	1	17687	17687		22.658	5.5452	1	5546400			30951	4883	19474	19579	29809	29809					0.13593594195867809
SLMLRRHEP	9	Unmodified	_SLMLRRHEP_					0	0	0			REV__nc|ENSG00000187045|Q8IU80-2|TMPRSS6	REV__nc|ENSG00000187045|Q8IU80-2|TMPRSS6	MULTI-SECPEP	HCT116MG_D190212_S3	3	570.5123291015625	2	569.811125	1137.6077	0.57863	0.00032971	-0.5926	-0.00033767	-0.01397	-7.9605E-06	569.8106119128827	56.46	0.15739	56.176	56.097	56.255	-0.28367					4	2	2	0	0	0	0.26734	1	21406	21406		4.3292	0	1	1063100	+		30952	13911	19475	19580	29810	29810					0.044396989596407366
SLNALLGV	8	Unmodified	_SLNALLGV_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	HCT116MG_D190212_S2	2	393.7392883300781	2	393.739628	785.464704	0.19752	7.7772E-05	-0.55615	-0.00021898	-0.35863	-0.00014121	393.73926583851744	52.508	0.20589	52.321	52.193	52.399	-0.18725					5	3	2	0	0	0	0.62424	1	20203	20203		30.225	0	1	10551000	+		30953	10504	19476	19581	29811	29811					0.0633901484004582
SLNKLRKLEL	10	Unmodified	_SLNKLRKLEL_					0	0	0		nc|ENSG00000143401|Q9BTT0-3|ANP32E;ENSG00000143401|ENST00000583931|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	nc|ENSG00000143401|Q9BTT0-3|ANP32E	MSMS	HCT116MG_D190212_S1	1	405.2594299316406	3	405.259079	1212.75541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.962	1	51.962	51.462	52.462	0								0	0	0	0.96337	1	19863	19863		1.7423	0	1				30954	3809	19477	19582	29812	29812					0.15753913765297511
SLNKRESVI	9	Unmodified	_SLNKRESVI_					0	0	0		nc|ENSG00000198300|Q9GZU2-3|PEG3;PEG3|p.T824Nfs*10|1|0.16|ENSG00000198300|chr19:56815956-56815971|TCCCTTCCTTCAGAGG/-|frameshift_variant;nc|ENSG00000198300|Q9GZU2-2|PEG3;ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3	nc|ENSG00000198300|Q9GZU2-3|PEG3	nc|ENSG00000198300|Q9GZU2-3|PEG3	MULTI-MSMS	HCT116MG_D190212_S3	3	523.8053588867188	2	523.303655	1044.59276	0.29672	0.00015527	0.47876	0.00025054	0.77548	0.00040581	523.3036233874781	48.305	1.2382	47.989	47.21	48.449	-0.31596					40	23	2	0	0	0	0.49914	1	18276	18276		16.942	0	1	7759200			30955	6223	19478	19583	29813	29813					0.07224530363282611
SLNQASITSFL	11	Unmodified	_SLNQASITSFL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.S3504Mfs*5|1|0.15|ENSG00000115760|chr2:32513095-32513098|TAGT/-|frameshift_variant;BIRC6|p.K3585Sfs*8|1|0.32|ENSG00000115760|chr2:32515171-32515171|A/-|frameshift_variant	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	HCT116MG_D190212_S2	2	590.921630859375	2	590.814053	1179.61355	0.50571	0.00029878	0.202	0.00011934	0.70771	0.00041812	590.814103036661	30.853	0.36325	30.586	30.456	30.819	-0.26704					10	6	2	0	0	0	0.73661	1	11311	11311		14.405	14.405	1	24692000			30956	2485	19479	19584	29814	29814					0.03093075952278923
SLNRKFKRQL	10	Unmodified	_SLNRKFKRQL_					0	0	0			REV__ENSG00000145569|ENST00000274217|OTULINL	REV__ENSG00000145569|ENST00000274217|OTULINL	MSMS	HCT116MG_D190212_S1	1	645.3936157226562	2	645.39367	1288.77279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.56	1	40.56	40.06	41.06	0								0	0	0	0.95507	1	15249	15249		3.5965	0.60125	1		+		30957	12451	19480	19585	29815	29815					0.1399525409094622
SLNTHVKNQSR	11	Unmodified	_SLNTHVKNQSR_					0	0	0		ENSG00000196110|ENST00000591998|ZNF699	ENSG00000196110|ENST00000591998|ZNF699	ENSG00000196110|ENST00000591998|ZNF699	MULTI-MSMS	HCT116MG_D190212_S2	2	642.1525268554688	2	642.344375	1282.6742	0.76398	0.00049074	-0.78406	-0.00050364	-0.020084	-1.2901E-05	642.3438206173	39.33	0.30932	39.252	39.019	39.328	-0.077835					7	5	2	0	0	0	0.71776	1	14808	14808		15.248	0.8431	1	39609000			30958	6043	19481	19586	29816	29816					0.04416606055201555
SLNVHPPPP	9	Unmodified	_SLNVHPPPP_					0	0	0			REV__ENST00000416904.4_1_12:53581439-53581565:+|nuORF	REV__ENST00000416904.4_1_12:53581439-53581565:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	479.2616271972656	2	479.261259	956.507966	0.11211	5.3732E-05	0.021337	1.0226E-05	0.13345	6.3958E-05	479.26118646682625	20.422	1.9856	20.471	19.738	21.724	0.048107					71	37	3	0	0	0	0.32978	1	7461	7461		27.629	1.3607	1	8694200	+		30959	15482	19482	19587	29817	29817					0.027972046173204035
SLNVHPPPP	9	Unmodified	_SLNVHPPPP_					0	0	0			REV__ENST00000416904.4_1_12:53581439-53581565:+|nuORF	REV__ENST00000416904.4_1_12:53581439-53581565:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	479.2607727050781	2	479.261259	956.507966	0.39003	0.00018693	-0.39118	-0.00018748	-0.0011484	-5.504E-07	479.2609985947082	20.594	1.4546	20.393	19.885	21.339	-0.20133					46	27	2	0	0	0	0.32978	1	6933	6933		27.629	1.3607	1	3457500	+		30960	15482	19482	19587	29818	29818					0.027972046173204035
SLPAPWAV	8	Unmodified	_SLPAPWAV_					0	0	0		ENST00000261875.9_1_15:65822883-65822988:+|nuORF	ENST00000261875.9_1_15:65822883-65822988:+|nuORF	ENST00000261875.9_1_15:65822883-65822988:+|nuORF	MSMS	HCT116MG_D190212_S4	4	420.7332458496094	2	420.734346	839.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.756	1	48.391	47.891	48.891	-0.36539								0	0	0	0.8837	1	18064	18064		2.8892	0	1				30961	6859	19483	19588	29819	29819					0.027990321856123046
SLPGGGQEPSR	11	Unmodified	_SLPGGGQEPSR_					0	0	0		ENST00000495497.1_1_2:240013111-240013327:-|nuORF	ENST00000495497.1_1_2:240013111-240013327:-|nuORF	ENST00000495497.1_1_2:240013111-240013327:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	542.773193359375	2	542.772719	1083.53089	0.44335	0.00024064	0.076358	4.1445E-05	0.51971	0.00028208	542.772761311428	18.716	0.62491	18.786	18.406	19.031	0.069159					26	11	3	0	0	0	0.6626	1	6285	6285		28.495	0.86571	1	9631700			30962	8381	19484	19589	29820	29820					-0.007538210558550418
SLPKCQPVSV	10	Unmodified	_SLPKCQPVSV_					0	0	0			REV__ENSG00000108963|ENST00000263083|DPH1	REV__ENSG00000108963|ENST00000263083|DPH1	MSMS	HCT116MG_D190212_S2	2	353.0986328125	3	353.195198	1056.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.8	1	58.635	58.135	59.135	-0.1653								0	0	0	0.96453	1	22734	22734		0.62683	0	1		+		30963	11362	19485	19590	29821	29821					0.037746697426428
SLPKQLVLRQ	10	Unmodified	_SLPKQLVLRQ_					0	0	0		PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant;ENSG00000110851|ENST00000228437|PRDM4	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	PRDM4|p.Y527Lfs*3|1|0.25|ENSG00000110851|chr12:107742250-107742251|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	591.3720703125	2	591.371872	1180.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.374	1	35.374	34.874	35.874	0								0	0	0	0.94551	1	13156	13156		5.7319	0.43497	1				30964	2267	19486	19591	29822	29822					0.14605644593780198
SLPLAANQVPP	11	Unmodified	_SLPLAANQVPP_					0	0	0		ENSG00000080603|ENST00000262518|SRCAP;SRCAP|p.P1879Tfs*21|1|0.46|ENSG00000080603|chr16:30725049-30725050|-/C|frameshift_variant;SRCAP|p.S1859Afs*108|1|0.25|ENSG00000080603|chr16:30724993-30724993|C/-|frameshift_variant;SRCAP|p.R1871Gfs*96|1|0.19|ENSG00000080603|chr16:30725031-30725031|C/-|frameshift_variant;SRCAP|p.P1878Hfs*89|2|0.36|ENSG00000080603|chr16:30725050-30725050|C/-|frameshift_variant;SRCAP|p.K2179Rfs*128|1|0.2|ENSG00000080603|chr16:30733930-30733930|A/-|frameshift_variant;SRCAP|p.R2548Efs*3|1|0.36|ENSG00000080603|chr16:30737668-30737669|-/C|frameshift_variant;SRCAP|p.L2975*|1|0.31|ENSG00000080603|chr16:30738960-30738960|C/-|frameshift_variant	ENSG00000080603|ENST00000262518|SRCAP	ENSG00000080603|ENST00000262518|SRCAP	MULTI-SECPEP	HCT116MG_D190212_S2	2	553.2805786132812	2	553.813856	1105.61316	0.2504	0.00013868	0.50019	0.00027701	0.75059	0.00041569	553.8142064696583	38.655	0.26548	38.57	38.437	38.702	-0.084618					9	4	3	0	0	0	0.3453	1	14577	14577		24.021	21.025	1	12102000			30965	1397	19487	19592	29823	29823					0.06457701023077789
SLPPPFLCYKL	11	Unmodified	_SLPPPFLCYKL_					0	0	0		ENST00000608799.1_1_7:72395184-72395358:-|nuORF	ENST00000608799.1_1_7:72395184-72395358:-|nuORF	ENST00000608799.1_1_7:72395184-72395358:-|nuORF	MSMS	HCT116MG_D190212_S2	2	639.0616455078125	2	639.35176	1276.68897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.7	1	52.513	52.013	53.013	-0.18725								0	0	0	0.94145	1	20250	20250		10.8	1.4164	1				30966	9130	19488	19593	29824	29824					0.061689618789841916
SLPRTTLR	8	Unmodified	_SLPRTTLR_					0	0	0			REV__ENST00000602547.1_1_12:6993848-6993959:+|nuORF	REV__ENST00000602547.1_1_12:6993848-6993959:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	472.2879638671875	2	472.287808	942.561064	0.022745	1.0742E-05	-0.014326	-6.7661E-06	0.0084184	3.9759E-06	472.2876986091633	50.755	0.5685	50.755	50.523	51.091	0					23	10	4	0	0	0	0.78619	1	19357	19357		13.042	5.1323	1	453530000	+		30967	16755	19489	19594	29825	29825					0.0874858239999412
SLPSISLTRKR	11	Unmodified	_SLPSISLTRKR_					0	0	0			REV__GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant	REV__GLI3|p.P1033Rfs*46|3|0.44|ENSG00000106571|chr7:41965975-41965975|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	629.38671875	2	629.385511	1256.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.764	1	53.464	52.964	53.964	-0.29946								0	0	0	0.92235	1	20356	20356		17.113	7.7298	1		+		30968	11303	19490	19595	29826	29826					0.1383612813417585
SLPSQKAEFL	10	Unmodified	_SLPSQKAEFL_					0	0	0		ENST00000234875.8_1_1:6245338-6245440:-|nuORF	ENST00000234875.8_1_1:6245338-6245440:-|nuORF	ENST00000234875.8_1_1:6245338-6245440:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	560.3059692382812	2	560.305864	1118.59717	0.39126	0.00021923	-0.10792	-6.0469E-05	0.28334	0.00015876	560.3057480793354	55.232	0.25394	55.044	54.968	55.222	-0.18797					5	4	2	0	0	0	0.71224	1	21311	21311		19.362	4.1135	1	66500000			30969	6776	19491	19596	29827	29827					0.04261994786179457
SLPVRKKIY	9	Unmodified	_SLPVRKKIY_					0	0	0		nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	nc|ENSG00000102384|Q92674-2|CENPI	MSMS	HCT116MG_D190212_S1	1	552.3513793945312	2	552.350409	1102.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.799	1	24.799	24.299	25.299	0								0	0	0	0.76913	1	8894	8894		3.9444	0.94915	1				30970	1838	19492	19597	29828	29828					0.1390287453637029
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	HCT116MG_D190212_S2	2	544.2907104492188	2	544.290745	1086.56694	0.26201	0.00014261	-0.31461	-0.00017124	-0.052601	-2.863E-05	544.2904774943169	39.889	0.20634	39.816	39.636	39.842	-0.072838					5	3	2	0	0	0	0.1935	1	15036	15036		41.956	3.78	1	23572000			30971	1151	19493	19598	29829	29829					0.027116361209891693
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	544.290745	1086.56694	0.3192	0.00017374	-0.18123	-9.864E-05	0.13797	7.5096E-05	544.2903416170078	39.869	0.20753	39.869	39.709	39.917	0	0.026549	0.0001296	NaN	41.956	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2770800			30972	1151	19493	19598							0.027116361209891693
SLQDVKAI	8	Unmodified	_SLQDVKAI_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MSMS	HCT116MG_D190212_S2	2	437.2561340332031	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.702	1	35.56	35.06	36.06	-0.14245								0	0	0	0.44863	1	13327	13327		46.021	2.1627	1		+		30973	12244	19494	19599	29830	29830					0.055383825231729134
SLQDVKAI	8	Unmodified	_SLQDVKAI_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-SECPEP	HCT116MG_D190212_S2	2	437.2561340332031	2	437.255643	872.496732	0.1106	4.8362E-05	0.59374	0.00025961	0.70434	0.00030798	437.25591853066607	35.62	0.20582	35.477	35.386	35.592	-0.14245					5	3	2	0	0	0	0.2314	1	13327	13327		46.021	2.1627	1	11846000	+		30974	12244	19494	19599	29831	29831					0.055383825231729134
SLQEGSYLL	9	Unmodified	_SLQEGSYLL_					0	0	0		ENST00000558121.5_1_15:60715835-60734771:-|nuORF;ENSG00000128915|ENST00000261520|ICE2	ENST00000558121.5_1_15:60715835-60734771:-|nuORF	ENST00000558121.5_1_15:60715835-60734771:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1009.520751953125	1	1009.52005	1008.51278	0.79741	0.000805	0.28292	0.00028562	1.0803	0.0010906	1009.5201558147095	51.941	0.30918	51.758	51.629	51.938	-0.18369					8	5	2	0	0	0	0.066823	1	19960	19960		66.457	14.827	1	19530000			30975	3018	19495	19600	29832	29832					0.008860439694331035
SLQELPVAWS	10	Unmodified	_SLQELPVAWS_					0	0	0		ENST00000390664.2_1_16:75529050-75529263:-|nuORF	ENST00000390664.2_1_16:75529050-75529263:-|nuORF	ENST00000390664.2_1_16:75529050-75529263:-|nuORF	MSMS	HCT116MG_D190212_S3	3	565.2985229492188	2	565.298039	1128.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.328	1	36.028	35.528	36.528	-0.30042								0	0	0	0.84701	1	13419	13419		22.736	1.1993	1				30976	7599	19496	19601	29833	29833					0.02237708269126415
SLQELRRKLFR	11	Unmodified	_SLQELRRKLFR_					0	0	0			REV__ENSG00000123933|ENST00000337190|MXD4	REV__ENSG00000123933|ENST00000337190|MXD4	MSMS	HCT116MG_D190212_S3	3	723.4389038085938	2	723.438609	1444.86267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.008	1	47.692	47.192	48.192	-0.31596								0	0	0	0.95686	1	18045	18045		2.7352	1.4057	1		+		30977	11773	19497	19602	29834	29834					0.15802883699461745
SLQEPGSKTY	10	Unmodified	_SLQEPGSKTY_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MSMS	HCT116MG_D190212_S2	2	555.26416015625	2	555.277303	1108.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.856	1	32.645	32.145	33.145	-0.21135								0	0	0	0.82154	1	12171	12171		26.021	1.0297	1				30978	1014	19498	19603	29835	29835					-0.009874724901692389
SLQFHILRLFH	11	Unmodified	_SLQFHILRLFH_					0	0	0		ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	MSMS	HCT116MG_D190212_S2	2	705.9052124023438	2	705.903871	1409.79319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.581	1	53.392	52.892	53.892	-0.1894								0	0	0	0.94755	1	20609	20609		7.609	2.3121	1				30979	5294	19499	19604	29836	29836					0.10468424750729355
SLQGTSLSVP	10	Unmodified	_SLQGTSLSVP_					0	0	0			REV__ENST00000414049.1_1_13:90014155-90014710:-|nuORF	REV__ENST00000414049.1_1_13:90014155-90014710:-|nuORF	MSMS	HCT116MG_D190212_S4	4	494.76922607421875	2	494.769114	987.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.971	1	33.586	33.086	34.086	-0.38426								0	0	0	0.92272	1	12386	12386		10.824	0.64053	1		+		30980	15460	19500	19605	29837	29837					0.02941446343709231
SLQIEHTTIYH	11	Unmodified	_SLQIEHTTIYH_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	HCT116MG_D190212_S1	1	671.3439331054688	2	671.343509	1340.67246	1.1726	0.0007872	-0.49661	-0.00033339	0.67596	0.0004538	671.3429812871016	37.473	0.25471	37.473	37.348	37.602	0					7	4	2	0	0	0	0.57532	1	14026	14026		38.176	1.6694	1	17119000	+		30981	14373	19501	19606	29838	29838					0.0157555224659518
SLQIEHTTIYH	11	Unmodified	_SLQIEHTTIYH_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	HCT116MG_D190212_S2	2	671.3430786132812	2	671.343509	1340.67246	0.13126	8.8118E-05	-1.0831	-0.00072714	-0.95186	-0.00063902	671.3429136083429	37.531	0.25356	37.428	37.284	37.537	-0.10318					7	4	2	0	0	0	0.57532	1	14089	14089		38.176	15.439	1	46752000	+		30982	14373	19501	19606	29839	29839					0.0157555224659518
SLQIEHTTIYH	11	Unmodified	_SLQIEHTTIYH_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	671.343509	1340.67246	0.13126	8.8118E-05	-1.0831	-0.00072714	-0.95186	-0.00063902	671.3429136083429	37.531	0.25356	37.428	37.284	37.537	-0.10318	-0.022527	-0.00024011	NaN	38.176	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46752000	+		30983	14373	19501	19606							0.0157555224659518
SLQKILHQL	9	Unmodified	_SLQKILHQL_					0	0	0		ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	MSMS	HCT116MG_D190212_S1	1	540.33251953125	2	540.332216	1078.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.711	1	44.711	44.211	45.211	0								0	0	0	0.19683	1	16921	16921		47.594	14.809	1				30984	7689	19502	19607	29840	29840					0.11369997639667417
SLQKILHQL	9	Unmodified	_SLQKILHQL_					0	0	0		ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	ENST00000399022.8_1_18:33613695-33613761:-|nuORF	MSMS	HCT116MG_D190212_S2	2	540.3324584960938	2	540.332216	1078.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.72	1	44.635	44.135	45.135	-0.084797								0	0	0	0.029033	1	16989	16989		83.429	39.656	1				30985	7689	19502	19607	29841	29841					0.11369997639667417
SLQKTIYKL	9	Unmodified	_SLQKTIYKL_					0	0	0		ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant;ROCK1|p.K1307Nfs*3|1|0.28|ENSG00000067900|chr18:20953718-20953718|T/-|frameshift_variant;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.K818Efs*6|1|0.51|ENSG00000067900|chr18:20984387-20984388|TT/-|frameshift_variant;ROCK1|p.N871Tfs*5|1|0.29|ENSG00000067900|chr18:20979952-20979952|T/-|frameshift_variant;ROCK1|p.N871Kfs*14|1|0.07|ENSG00000067900|chr18:20979951-20979952|-/T|frameshift_variant;ROCK1|p.I1150Nfs*5|1|0.23|ENSG00000067900|chr18:20959903-20959904|-/T|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	ROCK1|p.P1257Lfs*3|1|0.21|ENSG00000067900|chr18:20954866-20954866|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	547.3323974609375	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.192	1	45.192	44.692	45.692	0								0	0	0	0.76739	1	17116	17116		10.074	0.6908	1				30986	1193	19503	19608	29842	29842					0.11167462062576305
SLQLWNRRSWL	11	Unmodified	_SLQLWNRRSWL_					0	0	0		ENST00000569441.5_1_16:733170-733950:-|nuORF;ENST00000568689.5_1_16:733170-734340:-|nuORF	ENST00000569441.5_1_16:733170-733950:-|nuORF	ENST00000569441.5_1_16:733170-733950:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	729.9026489257812	2	729.90186	1457.78917	0.58021	0.00042349	-0.10176	-7.4274E-05	0.47845	0.00034922	729.9021047888384	52.639	0.7772	52.332	51.784	52.561	-0.3064					18	14	2	0	0	0	0.74191	1	19987	19987		5.2969	2.0156	1	28332000			30987	8875	19504	19609	29843	29843					0.07858335257014915
SLQPRPRQNNL	11	Unmodified	_SLQPRPRQNNL_					0	0	0		ENST00000260743.9_1_10:105210978-105212064:-|nuORF	ENST00000260743.9_1_10:105210978-105212064:-|nuORF	ENST00000260743.9_1_10:105210978-105212064:-|nuORF	MSMS	HCT116MG_D190212_S1	1	661.865966796875	2	661.868017	1321.72148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.076	1	45.076	44.576	45.576	0								0	0	0	0.9465	1	17069	17069		8.1555	1.9497	1				30988	6843	19505	19610	29844	29844					0.07348885326246091
SLQQNDEKQ	9	Unmodified	_SLQQNDEKQ_					0	0	0		nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2	nc|ENSG00000101977|P10911|MCF2	nc|ENSG00000101977|P10911|MCF2	MULTI-SECPEP	HCT116MG_D190212_S1	1	545.3092651367188	2	545.262185	1088.50982	0.51798	0.00028244	-0.0038563	-2.1027E-06	0.51413	0.00028033	545.7634147272821	22.384	0.31315	22.384	22.22	22.533	0					11	5	3	0	0	0	0.2025	1	7957	7957		13.906	0	1	4528500			30989	1818	19506	19611	29845	29845					-0.03089831155398315
SLQRHGRRPPR	11	Unmodified	_SLQRHGRRPPR_					0	0	0			REV__ENST00000536668.2_1_12:10999664-11034822:-|nuORF	REV__ENST00000536668.2_1_12:10999664-11034822:-|nuORF	MSMS	HCT116MG_D190212_S1	1	680.3948974609375	2	680.395067	1358.77558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.59	1	42.59	42.09	43.09	0								0	0	0	0.94538	1	16068	16068		8.7454	0	1		+		30990	11424	19507	19612	29846	29846					0.11054522268455003
SLQRRLPRTV	10	Unmodified	_SLQRRLPRTV_					0	0	0			REV__ENSG00000130513|ENST00000252809|GDF15	REV__ENSG00000130513|ENST00000252809|GDF15	MULTI-MSMS	HCT116MG_D190212_S1	1	613.3771362304688	2	613.37802	1224.74149	0.50382	0.00030903	-1.6869	-0.0010347	-1.1831	-0.00072568	613.376796986963	52.306	0.41145	52.306	52.125	52.536	0					10	7	2	0	0	0	0.65652	1	20035	20035		24.021	5.8742	1	9358700	+		30991	11927	19508	19613	29847	29847					0.13810681056816065
SLQSHKKLKL	10	Unmodified	_SLQSHKKLKL_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.K1017Hfs*3|1|0.03|ENSG00000183354|chr9:5922948-5922949|-/CAAATGG|frameshift_variant;KIAA2026|p.K740Nfs*16|1|0.13|ENSG00000183354|chr9:5954088-5954088|T/-|frameshift_variant;KIAA2026|p.I903Tfs*10|1|0.06|ENSG00000183354|chr9:5923288-5923289|-/GAAAGTGATG|frameshift_variant;KIAA2026|p.K690Rfs*3|1|0.14|ENSG00000183354|chr9:5968162-5968162|T/-|frameshift_variant	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MSMS	HCT116MG_D190212_S1	1	591.1213989257812	2	591.371872	1180.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.365	1	39.365	38.865	39.865	0								0	0	0	0.92607	1	14765	14765		10.074	0	1				30992	5714	19509	19614	29848	29848					0.14605644593802936
SLQSQQNFAK	10	Unmodified	_SLQSQQNFAK_					0	0	0			REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant	REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	575.7965698242188	2	575.796195	1149.57784	0.38493	0.00022164	0.39247	0.00022598	0.77741	0.00044763	575.7963970304035	17.458	0.20914	17.108	16.978	17.187	-0.34933					10	3	4	0	0	0	0.68976	1	5966	5966		29.437	8.9835	1	22976000	+		30993	13993	19510	19615	29849	29849					0.009030384952893655
SLQSQQNFAK	10	Unmodified	_SLQSQQNFAK_					0	0	0			REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant	REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	384.1998291015625	3	384.199889	1149.57784	-0.051466	-1.9773E-05	0.12284	4.7195E-05	0.071375	2.7422E-05	384.1998075527217	17.458	0.31353	17.108	16.978	17.291	-0.34933					8	5	3	0	0	0	0.74916	1	5968	5968		16.275	0.53592	1	14892000	+		30994	13993	19510	19615	29850	29850					0.009030384952893655
SLQSQQNFAK	10	Unmodified	_SLQSQQNFAK_					0	0	0			REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant	REV__ZNF611|p.F463Lfs*36|1|0.09|ENSG00000213020|chr19:52705666-52705666|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	575.2874755859375	2	575.796195	1149.57784	0.38493	0.00022164	0.39247	0.00022598	0.77741	0.00044763	575.7963970304035	17.458	0.20914	17.108	16.978	17.187	-0.34933					10	3	4	0	0	0	0.20286	1	5933	5933		57.249	15.294	1	22976000	+		30995	13993	19510	19615	29851	29851					0.009030384952893655
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	HCT116MG_D190212_S1	1	917.5308837890625	1	917.530224	916.522947	1.0048	0.00092194	-0.26252	-0.00024087	0.74229	0.00068107	917.5297423872147	54.511	0.203	54.511	54.384	54.587	0					7	3	3	0	0	0	0.047849	1	20934	20934		75.761	11.525	1	50780000			30996	1859	19511	19616	29852	29852					0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	HCT116MG_D190212_S2	2	917.5306396484375	1	917.530224	916.522947	0.69651	0.00063907	-0.28371	-0.00026031	0.4128	0.00037876	917.5297957478869	54.773	0.30779	54.585	54.406	54.714	-0.18797					10	5	3	0	0	0	0.030723	1	21099	21099		85.642	21.405	1	190160000			30997	1859	19511	19616	29853	29853					0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	HCT116MG_D190212_S3	3	917.5309448242188	1	917.530224	916.522947	0.74104	0.00067992	-0.20526	-0.00018833	0.53578	0.00049159	917.5301056814545	54.878	0.2612	54.582	54.452	54.713	-0.29587					7	4	2	0	0	0	0.055677	1	20819	20819		71.922	7.686	1	8388100			30998	1859	19511	19616	29854	29854					0.06134651694674176
SLQTKIEKV	9	Unmodified	_SLQTKIEKV_					0	0	0			REV__ENSG00000154007|ENST00000284142|ASB17	REV__ENSG00000154007|ENST00000284142|ASB17	MULTI-SECPEP	HCT116MG_D190212_S2	2	523.7489624023438	2	523.316232	1044.61791	0.3583	0.00018751	-0.92643	-0.00048482	-0.56813	-0.00029731	523.3155481008644	19.804	0.20757	19.429	19.298	19.506	-0.37503					7	3	3	0	0	0	0.10959	1	6897	6897		63.961	0	1	12440000	+		30999	12667	19512	19617	29855	29855					0.09738585165837321
SLRAVAKIHL	10	Unmodified	_SLRAVAKIHL_					0	0	0			REV__RAPGEF3|p.H248R|1|0.17|ENSG00000079337|chr12:47750354-47750354|T/C|missense_variant	REV__RAPGEF3|p.H248R|1|0.17|ENSG00000079337|chr12:47750354-47750354|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	554.3551025390625	2	554.353483	1106.69241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.249	1	44.249	43.749	44.749	0								0	0	0	0.94339	1	16737	16737		6.2058	1.4498	1		+		31000	17461	19513	19618	29856	29856					0.14333392767889563
SLREGLIR	8	Unmodified	_SLREGLIR_					0	0	0		ENST00000376566.8_1_X:48755234-48755303:+|nuORF	ENST00000376566.8_1_X:48755234-48755303:+|nuORF	ENST00000376566.8_1_X:48755234-48755303:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	472.28778076171875	2	472.287808	942.561064	0.23284	0.00010997	0.25083	0.00011847	0.48367	0.00022843	472.2877546709247	51.23	1.0815	51.051	50.604	51.685	-0.17869					59	20	4	0	0	0	0.76189	1	19775	19775		15.847	0	1	140880000			31001	7516	19514	19619	29857	29857					0.0874858239999412
SLREGLIR	8	Unmodified	_SLREGLIR_					0	0	0		ENST00000376566.8_1_X:48755234-48755303:+|nuORF	ENST00000376566.8_1_X:48755234-48755303:+|nuORF	ENST00000376566.8_1_X:48755234-48755303:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	472.287808	942.561064	0.23284	0.00010997	0.25083	0.00011847	0.48367	0.00022843	472.2877546709247	51.23	1.0815	51.051	50.604	51.685	-0.17869	0.14799	4.246E-05	NaN	15.847	59	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140880000			31002	7516	19514	19619							0.0874858239999412
SLRFPRFY	8	Unmodified	_SLRFPRFY_					0	0	0		nc|ENSG00000285946|P0DV60|LCE7A	nc|ENSG00000285946|P0DV60|LCE7A	nc|ENSG00000285946|P0DV60|LCE7A	MULTI-MSMS	HCT116MG_D190212_S2	2	543.2803344726562	2	543.298176	1084.5818	0.47409	0.00025757	-1.7862	-0.00097044	-1.3121	-0.00071286	543.2969974184098	54.263	0.20624	54.073	53.893	54.099	-0.1894					5	3	2	0	0	0	0.66848	1	20855	20855		26.341	5.8877	1	11369000			31003	9671	19515	19620	29858	29858					0.042891727796586565
SLRKEPRALAQ	11	Unmodified	_SLRKEPRALAQ_					0	0	0		ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	634.8738403320312	2	634.875311	1267.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.622	1	43.622	43.122	44.122	0								0	0	0	0.90489	1	16485	16485		19.362	1.2156	1				31004	230	19516	19621	29859	29859					0.11290957474375318
SLRKKRMILH	10	Unmodified	_SLRKKRMILH_					0	0	0		ENST00000454295.6_1_5:68736280-68737401:+|nuORF	ENST00000454295.6_1_5:68736280-68737401:+|nuORF	ENST00000454295.6_1_5:68736280-68737401:+|nuORF	MSMS	HCT116MG_D190212_S1	1	641.401123046875	2	641.400441	1280.78633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.913	1	39.913	39.413	40.413	0								0	0	0	0.94339	1	14986	14986		6.2058	0.47393	1				31005	8010	19517	19622	29860	29860					0.15716788598524545
SLRLALPLP	9	Unmodified	_SLRLALPLP_					0	0	0			REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF	REV__ENST00000561543.5_1_15:52971212-52971488:-|nuORF	MSMS	HCT116MG_D190212_S4	4	490.3186950683594	2	490.318577	978.622602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.831	1	50.476	49.976	50.976	-0.35483								0	0	0	0.76781	1	18899	18899		8.5933	0	1		+		31006	16494	19518	19623	29861	29861					0.13243514099281128
SLRLAYKDL	9	Unmodified	_SLRLAYKDL_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MSMS	HCT116MG_D190212_S4	4	360.2126159667969	3	360.213358	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.242	1	37.859	37.359	38.359	-0.38283								0	0	0	0.76793	1	14008	14008		8.1555	0	1				31007	6550	19519	19624	29862	29862					0.0825400488570267
SLRLRWEPVP	10	Unmodified	_SLRLRWEPVP_					0	0	0		COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant;COL7A1|p.P2298Lfs*90|1|0.18|ENSG00000114270|chr3:48572678-48572678|G/-|frameshift_variant;COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant;nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1;COL7A1|p.G2177Wfs*113|1|0.1|ENSG00000114270|chr3:48573864-48573865|-/G|frameshift_variant;COL7A1|p.P1441Lfs*269|1|0.36|ENSG00000114270|chr3:48583737-48583737|G/-|frameshift_variant;COL7A1|p.P1754Qfs*87|1|0.6|ENSG00000114270|chr3:48579490-48579490|G/-|frameshift_variant;COL7A1|p.P1990Qfs*15|1|0.14|ENSG00000114270|chr3:48575636-48575636|G/-|frameshift_variant;COL7A1|p.P2029Lfs*177|2|0.43|ENSG00000114270|chr3:48575438-48575438|G/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	COL7A1|p.E2208Sfs*12|1|0.12|ENSG00000114270|chr3:48573345-48573345|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	627.9559326171875	2	626.861672	1251.70879	0.82477	0.00051702	-1.0411	-0.00065264	-0.21635	-0.00013562	627.3625723044227	47.691	0.25893	47.558	47.325	47.584	-0.13281					7	4	3	0	0	0	0.86339	1	18125	18125		6.7232	0.51738	1	19813000			31008	530	19520	19625	29863	29863					0.09300473933967623
SLRPIRPI	8	Unmodified	_SLRPIRPI_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	476.30670166015625	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.761	1	41.761	41.261	42.261	0								0	0	0	0.8837	1	15733	15733		5.7604	0	1		+		31009	12047	19521	19626	29864	29864					0.12525763159305825
SLRQRLIWLTW	11	Unmodified	_SLRQRLIWLTW_					0	0	0			REV__nc|ENSG00000174837|Q14246-4|ADGRE1	REV__nc|ENSG00000174837|Q14246-4|ADGRE1	MSMS	HCT116MG_D190212_S1	1	736.4329833984375	2	736.430253	1470.84595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.246	1	51.246	50.746	51.746	0								0	0	0	0.9598	1	19574	19574		1.1933	0.12188	1		+		31010	13496	19522	19627	29865	29865					0.12936382813563796
SLRQRLIWLTW	11	Unmodified	_SLRQRLIWLTW_					0	0	0			REV__nc|ENSG00000174837|Q14246-4|ADGRE1	REV__nc|ENSG00000174837|Q14246-4|ADGRE1	MSMS	HCT116MG_D190212_S4	4	736.43359375	2	736.430253	1470.84595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.916	1	45.544	45.044	46.044	-0.37206								0	0	0	0.9598	1	16955	16955		1.1933	0.84271	1		+		31011	13496	19522	19627	29866	29866					0.12936382813563796
SLRREDRLLQR	11	Unmodified	_SLRREDRLLQR_					0	0	0		ENSG00000255690|ENST00000539664|TRIL	ENSG00000255690|ENST00000539664|TRIL	ENSG00000255690|ENST00000539664|TRIL	MULTI-MSMS	HCT116MG_D190212_S3	3	481.28369140625	3	481.283057	1440.82734	0.19684	9.4736E-05	0.79367	0.00038198	0.99051	0.00047672	481.28336631467147	54.708	0.78443	54.412	54.086	54.87	-0.29587					21	14	2	0	0	0	0.74191	1	20795	20795		1.1098	0.65524	1	2669800			31012	6607	19523	19628	29867	29867					0.1245622117169205
SLRRLRCRRLR	11	Unmodified	_SLRRLRCRRLR_					0	0	0		ENST00000392973.7_1_16:90075326-90076003:-|nuORF	ENST00000392973.7_1_16:90075326-90076003:-|nuORF	ENST00000392973.7_1_16:90075326-90076003:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	495.2347412109375	3	495.644155	1483.91064	0.35979	0.00017833	-1.2425	-0.00061585	-0.88274	-0.00043752	495.6433415825459	22.28	0.26093	22.28	22.115	22.376	0					9	4	3	0	0	0	0.36579	1	7882	7882		0.92553	0	1	12897000			31013	7620	19524	19629	29868	29868					0.18803679138545704
SLRRLRRLV	9	Unmodified	_SLRRLRRLV_					0	0	0			REV__ENST00000477980.6_1_X:100878297-100878528:+|nuORF	REV__ENST00000477980.6_1_X:100878297-100878528:+|nuORF	MSMS	HCT116MG_D190212_S3	3	390.2637939453125	3	390.263157	1167.76764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.844	1	60.598	60.098	61.098	-0.24588								0	0	0	0.77019	1	23208	23208		0.23584	0	1		+		31014	15927	19525	19630	29869	29869					0.19046995018970847
SLRRRRRRRRR	11	Unmodified	_SLRRRRRRRRR_					0	0	0			REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	MSMS	HCT116MG_D190212_S2	2	812.5245971679688	2	812.525605	1623.03666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.484	1	57.309	56.809	57.809	-0.17494								0	0	0	0.95954	1	22196	22196		1.3295	0	1				31015	15197	19526	19631	29870	29870					0.2500594675884713
SLRRWALALGT	11	Unmodified	_SLRRWALALGT_					0	0	0			REV__nc|ENSG00000213402|Q14761|PTPRCAP	REV__nc|ENSG00000213402|Q14761|PTPRCAP	MSMS	HCT116MG_D190212_S4	4	622.3646240234375	2	622.367121	1242.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.539	1	40.161	39.661	40.661	-0.37828								0	0	0	0.93717	1	14876	14876		13.042	4.2971	1		+		31016	17288	19527	19632	29871	29871					0.108038763082277
SLRVDLLDI	9	Unmodified	_SLRVDLLDI_					0	0	0		PCDHGC4|p.V343I|1|0.67|ENSG00000242419|chr5:141486200-141486200|G/A|missense_variant	PCDHGC4|p.V343I|1|0.67|ENSG00000242419|chr5:141486200-141486200|G/A|missense_variant	PCDHGC4|p.V343I|1|0.67|ENSG00000242419|chr5:141486200-141486200|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	522.3268432617188	2	522.308406	1042.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.612	1	57.437	56.937	57.937	-0.17494								0	0	0	0.38321	1	22249	22249		34.402	0	1				31017	9736	19528	19633	29872	29872					0.08266298648823067
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7903137207031	2	498.78985	995.565146	0.36252	0.00018082	0.037782	1.8845E-05	0.40031	0.00019967	498.7897894911546	54.211	0.35948	54.022	53.842	54.201	-0.1894					16	6	3	0	0	0	0.010304	1	20852	20852		112.59	41.46	1	391670000			31018	819	19529	19634	29873	29873					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	HCT116MG_D190212_S2	2	996.5723876953125	1	996.572423	995.565146	0.56179	0.00055987	-0.14422	-0.00014372	0.41757	0.00041614	996.5719266336845	54.16	0.20624	53.971	53.893	54.099	-0.1894					5	3	2	0	0	0	0.019399	1	20872	20872		97.075	39.603	1	36403000			31019	819	19529	19634	29874	29874					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	HCT116MG_D190212_S3	3	498.7896423339844	2	498.78985	995.565146	0.35473	0.00017694	-0.27719	-0.00013826	0.077538	3.8675E-05	498.7896716413866	54.355	0.26153	54.06	53.929	54.19	-0.29587					9	4	3	0	0	0	0.065014	1	20621	20621		67.344	16.489	1	4285300			31020	819	19529	19634	29875	29875					0.06718627103043673
SLSEHTSDD	9	Unmodified	_SLSEHTSDD_					0	0	0			REV__ENSG00000005175|ENST00000005386|RPAP3	REV__ENSG00000005175|ENST00000005386|RPAP3	MULTI-MSMS	HCT116MG_D190212_S2	2	495.704833984375	2	495.704168	989.393783	0.23075	0.00011438	0.90635	0.00044928	1.1371	0.00056367	495.70473780851535	41.083	0.25745	41.015	40.882	41.14	-0.068195					10	4	3	0	0	0	0.2682	1	15517	15517		34.102	5.6156	1	58775000	+		31021	10471	19530	19635	29876	29876					-0.10133774726079992
SLSEHTSDD	9	Unmodified	_SLSEHTSDD_					0	0	0			REV__ENSG00000005175|ENST00000005386|RPAP3	REV__ENSG00000005175|ENST00000005386|RPAP3	MULTI-MSMS	HCT116MG_D190212_S3	3	495.704833984375	2	495.704168	989.393783	0.19902	9.8655E-05	0.52562	0.00026055	0.72464	0.00035921	495.70450156112724	41.325	0.34473	41.023	40.84	41.185	-0.30185					10	7	2	0	0	0	0.19218	1	15379	15379		42.095	5.9675	1	15248000	+		31022	10471	19530	19635	29877	29877					-0.10133774726079992
SLSEHTSDD	9	Unmodified	_SLSEHTSDD_					0	0	0			REV__ENSG00000005175|ENST00000005386|RPAP3	REV__ENSG00000005175|ENST00000005386|RPAP3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	495.704168	989.393783	0.25446	0.00012614	1.0138	0.00050253	1.2682	0.00062866	495.70469237366274	41.003	0.18721	41.003	40.946	41.133	0	-0.010613	0.00032573	NaN	42.095	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5927800	+		31023	10471	19530	19635							-0.10133774726079992
SLSEHTSDD	9	Unmodified	_SLSEHTSDD_					0	0	0			REV__ENSG00000005175|ENST00000005386|RPAP3	REV__ENSG00000005175|ENST00000005386|RPAP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	495.704168	989.393783	0.23075	0.00011438	0.90635	0.00044928	1.1371	0.00056367	495.70473780851535	41.083	0.25745	41.015	40.882	41.14	-0.068195	0.0015012	0.00021924	NaN	42.095	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58775000	+		31024	10471	19530	19635							-0.10133774726079992
SLSEHTSDD	9	Unmodified	_SLSEHTSDD_					0	0	0			REV__ENSG00000005175|ENST00000005386|RPAP3	REV__ENSG00000005175|ENST00000005386|RPAP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	495.704168	989.393783	0.19902	9.8655E-05	0.52562	0.00026055	0.72464	0.00035921	495.70450156112724	41.325	0.34473	41.023	40.84	41.185	-0.30185	0.0091122	-0.00015822	NaN	42.095	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15248000	+		31025	10471	19530	19635							-0.10133774726079992
SLSEKQYFL	9	Unmodified	_SLSEKQYFL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	HCT116MG_D190212_S1	1	557.7927856445312	2	557.792589	1113.57063	0.5215	0.00029089	0.16889	9.4206E-05	0.69039	0.0003851	557.792526859041	46.635	0.20752	46.635	46.543	46.751	0					8	3	3	0	0	0	0.030039	1	17723	17723		86.332	26.258	1	9697700			31026	2088	19531	19636	29878	29878					0.01838305894852965
SLSEKQYFL	9	Unmodified	_SLSEKQYFL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7930297851562	2	557.792589	1113.57063	0.73036	0.00040739	0.25649	0.00014307	0.98685	0.00055046	557.7925822885277	46.659	0.30846	46.548	46.369	46.677	-0.11121					11	5	3	0	0	0	0.02327	1	17785	17785		93.166	39.333	1	49890000			31027	2088	19531	19636	29879	29879					0.01838305894852965
SLSFASIA	8	Unmodified	_SLSFASIA_					0	0	0		nc|ENSG00000224940|C9JH25-2|PRRT4;nc|ENSG00000224940|C9JH25-3|PRRT4;ENSG00000224940|ENST00000446477|PRRT4	nc|ENSG00000224940|C9JH25-2|PRRT4	nc|ENSG00000224940|C9JH25-2|PRRT4	MULTI-MSMS	HCT116MG_D190212_S2	2	795.4251708984375	1	795.424696	794.417419	0.89068	0.00070847	0.026174	2.0819E-05	0.91685	0.00072929	795.4244899818523	27.77	0.35937	27.428	27.295	27.655	-0.34201					14	6	3	0	0	0	0.50777	1	10107	10107		40.449	0	1	103430000			31028	6483	19532	19637	29880	29880					0.011987355690507684
SLSGELREV	9	Unmodified	_SLSGELREV_					0	0	0		ENSG00000060339|ENST00000265872|CCAR1;nc|ENSG00000060339|Q8IX12-2|CCAR1	ENSG00000060339|ENST00000265872|CCAR1	ENSG00000060339|ENST00000265872|CCAR1	MULTI-MSMS	HCT116MG_D190212_S2	2	495.26678466796875	2	495.266739	988.518924	0.42073	0.00020837	0.30483	0.00015097	0.72555	0.00035934	495.2668141776812	38.98	0.41308	38.895	38.754	39.167	-0.084621					9	7	2	0	0	0	0.27446	1	14705	14705		33.445	12.991	1	15497000			31029	1108	19533	19638	29881	29881					0.024205622009503713
SLSGPGRLGP	10	Unmodified	_SLSGPGRLGP_					0	0	0		ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	470.7638854980469	2	470.764166	939.513779	-0.066341	-3.1231E-05	0.35333	0.00016633	0.28699	0.0001351	470.7640928824397	30.029	0.25808	29.744	29.615	29.873	-0.28453					6	4	2	0	0	0	0.33066	1	11054	11054		47.749	9.7747	1	12520000			31030	8279	19534	19639	29882	29882					0.04160303129003751
SLSGPGRLGP	10	Unmodified	_SLSGPGRLGP_					0	0	0		ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	470.7641906738281	2	470.764166	939.513779	0.34585	0.00016281	0.080924	3.8096E-05	0.42677	0.00020091	470.7643158485333	30.014	0.31612	29.777	29.61	29.926	-0.23655					7	5	2	0	0	0	0.43216	1	10946	10946		39.95	10.868	1	3629100			31031	8279	19534	19639	29883	29883					0.04160303129003751
SLSGPGRLGP	10	Unmodified	_SLSGPGRLGP_					0	0	0		ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	470.764166	939.513779	0.34585	0.00016281	0.080924	3.8096E-05	0.42677	0.00020091	470.7643158485333	30.014	0.31612	29.777	29.61	29.926	-0.23655	0.016633	-7.553E-05	NaN	47.749	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3629100			31032	8279	19534	19639							0.04160303129003751
SLSHELWKV	9	Unmodified	_SLSHELWKV_					0	0	0		nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENST00000592566.1_1_17:76094428-76098694:+|nuORF	nc|ENSG00000078687|Q9HCJ0-2|TNRC6C	nc|ENSG00000078687|Q9HCJ0-2|TNRC6C	MULTI-MSMS	HCT116MG_D190212_S2	2	549.80126953125	2	549.800749	1097.58694	0.34922	0.000192	0.17327	9.5267E-05	0.52249	0.00028727	549.8011464925656	42.266	0.25877	42.197	42.068	42.327	-0.068199					6	4	2	0	0	0	0.23993	1	16027	16027		39.95	26.907	1	17346000			31033	1371	19535	19640	29884	29884					0.04205431851596586
SLSHMGAY	8	Unmodified	_SLSHMGAY_					0	0	0		PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant;PHLDB2|p.K1064Nfs*28|1|0.29|ENSG00000144824|chr3:111967696-111967696|A/-|frameshift_variant;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.P552Hfs*18|1|0.06|ENSG00000144824|chr3:111913637-111913638|-/AT|frameshift_variant;PHLDB2|p.K665Rfs*6|1|0.22|ENSG00000144824|chr3:111920409-111920409|A/-|frameshift_variant;PHLDB2|p.S734Ifs*5|1|0.07|ENSG00000144824|chr3:111939544-111939545|-/TAACT|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	PHLDB2|p.V822Lfs*6|1|0.1|ENSG00000144824|chr3:111945316-111945316|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	433.1971435546875	2	433.19727	864.379988	0.15686	6.7951E-05	-0.29198	-0.00012648	-0.13512	-5.8533E-05	433.1970608089855	27.197	0.26351	26.845	26.659	26.923	-0.35254					8	4	2	0	0	0	0.60268	1	9876	9876		32.117	7.4431	1	15062000			31034	3888	19536	19641	29885	29885					-0.05762678968221735
SLSLLRPQN	9	Unmodified	_SLSLLRPQN_					0	0	0		ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000189357|ENST00000419782|SPATA31D4	ENSG00000189357|ENST00000419782|SPATA31D4	MULTI-MSMS	HCT116MG_D190212_S2	2	514.298583984375	2	514.298373	1026.58219	0.37138	0.000191	0.049868	2.5647E-05	0.42125	0.00021665	514.2982588182193	51.952	1.0305	51.768	51.115	52.145	-0.18369					44	19	3	0	0	0	0.61923	1	19783	19783		10.074	0.6908	1	39146000			31035	5907	19537	19642	29886	29886					0.0699654770885445
SLSLNKKSRS	10	Unmodified	_SLSLNKKSRS_					0	0	0		nc|ENSG00000205097|Q64ET8|FRG2;ENSG00000225899|ENST00000425520|FRG2B;ENSG00000205097|ENST00000504750|FRG2	nc|ENSG00000205097|Q64ET8|FRG2	nc|ENSG00000205097|Q64ET8|FRG2	MSMS	HCT116MG_D190212_S3	3	560.3280029296875	2	560.327662	1118.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.16	1	43.852	43.352	44.352	-0.30759								0	0	0	0.95648	1	16499	16499		3.2813	0	1				31036	6367	19538	19643	29887	29887					0.08619604283330773
SLSLVSSGTVF	11	Unmodified	_SLSLVSSGTVF_					0	0	0			REV__ENST00000394668.2_1_4:109543722-109546327:+|nuORF	REV__ENST00000394668.2_1_4:109543722-109546327:+|nuORF	MSMS	HCT116MG_D190212_S1	1	366.20220947265625	3	366.201007	1095.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.238	1	34.238	33.738	34.738	0								0	0	0	0.95307	1	12697	12697		4.7159	0	1		+		31037	15342	19539	19644	29888	29888					0.037222885493065405
SLSPPTPAPP	10	Unmodified	_SLSPPTPAPP_					0	0	0			REV__nc|ENSG00000196535|O95411|MYO18A	REV__nc|ENSG00000196535|O95411|MYO18A	MSMS	HCT116MG_D190212_S3	3	482.26019287109375	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.583	1	27.394	26.894	27.894	-0.18847								0	0	0	0.86471	1	9946	9946		20.454	1.1966	1		+		31038	17258	19540	19645	29889	29889					0.024543651776070874
SLSRPLPGP	9	Unmodified	_SLSRPLPGP_					0	0	0			REV__ENSG00000185800|ENST00000270223|DMWD	REV__ENSG00000185800|ENST00000270223|DMWD	MSMS	HCT116MG_D190212_S4	4	462.2703857421875	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.127	1	37.744	37.244	38.244	-0.38283								0	0	0	0.768	1	13961	13961		7.9102	1.187	1		+		31039	13858	19541	19646	29890	29890					0.05925491134371441
SLSRRIHRA	9	Unmodified	_SLSRRIHRA_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	HCT116MG_D190212_S1	1	548.3273315429688	2	548.328331	1094.64211	0.38169	0.00020929	-1.8354	-0.0010064	-1.4537	-0.00079712	548.3272906348644	44.388	0.58242	44.388	43.986	44.568	0					12	10	2	0	0	0	0.71345	1	16775	16775		4.3292	0	1	17927000	+		31040	12164	19542	19647	29891	29891					0.09857283162750718
SLSRTRRTIRK	11	Unmodified	_SLSRTRRTIRK_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MSMS	HCT116MG_D190212_S1	1	687.5099487304688	2	687.426033	1372.83751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.619	1	44.619	44.119	45.119	0								0	0	0	0.95113	1	16884	16884		5.7319	0	1				31041	3800	19543	19648	29892	29892					0.1660082889691239
SLSSFLHGV	9	Unmodified	_SLSSFLHGV_					0	0	0		ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENSG00000003393|ENST00000264276|ALS2;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF;ALS2|p.P1016Lfs*29|1|0.35|ENSG00000003393|chr2:201726799-201726799|G/-|frameshift_variant	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENST00000482891.5_1_2:202587756-202633608:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	473.753662109375	2	473.753267	945.491981	0.10327	4.8926E-05	0.27531	0.00013043	0.37859	0.00017936	473.75365540229495	53.165	0.31176	52.976	52.758	53.07	-0.18922					7	5	2	0	0	0	0.17018	1	20472	20472		44.407	8.3628	1	16532000			31042	795	19544	19649	29893	29893					0.01705498380431436
SLSSIFTKQR	10	Unmodified	_SLSSIFTKQR_					0	0	0		ENST00000313654.13_2_18:21422380-21422625:+|nuORF	ENST00000313654.13_2_18:21422380-21422625:+|nuORF	ENST00000313654.13_2_18:21422380-21422625:+|nuORF	MSMS	HCT116MG_D190212_S1	1	584.29931640625	2	583.830037	1165.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.651	1	37.651	37.151	38.151	0								0	0	0	0.90892	1	14073	14073		13.906	0.86358	1				31043	7074	19545	19650	29894	29894					0.06932488426082273
SLSSIRRVG	9	Unmodified	_SLSSIRRVG_					0	0	0		ENSG00000144406|ENST00000673920|UNC80;UNC80|p.C1944Afs*12|1|0.28|ENSG00000144406|chr2:209933850-209933850|C/-|frameshift_variant;UNC80|p.N2032*|1|0.42|ENSG00000144406|chr2:209936855-209936856|-/T|frameshift_variant;UNC80|p.P2700Hfs*13|1|0.23|ENSG00000144406|chr2:209972238-209972238|C/-|frameshift_variant	ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	MULTI-SECPEP	HCT116MG_D190212_S1	1	488.343017578125	2	487.790715	973.566878	0.24661	0.00012029	0.74106	0.00036148	0.98767	0.00048178	487.79092619878463	51.995	0.42096	51.995	51.652	52.073	0					11	7	2	0	0	0	0.26734	1	19752	19752		1.8442	0	1	30257000			31044	3863	19546	19651	29895	29895					0.07903680911658739
SLSVSTNHVCI	11	Unmodified	_SLSVSTNHVCI_					0	0	0		ENST00000557732.1_1_14:90744682-90745540:-|nuORF	ENST00000557732.1_1_14:90744682-90745540:-|nuORF	ENST00000557732.1_1_14:90744682-90745540:-|nuORF	MSMS	HCT116MG_D190212_S2	2	387.19732666015625	3	387.197379	1158.57031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.625	1	47.492	46.992	47.992	-0.13281								0	0	0	0.95113	1	18172	18172		4.7159	2.8095	1				31045	8796	19547	19652	29896	29896					-0.0026343709662342008
SLTERHKILH	10	Unmodified	_SLTERHKILH_					0	0	0		NCOA1|p.E742Nfs*12|1|0.21|ENSG00000084676|chr2:24707688-24707688|A/-|frameshift_variant;nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	NCOA1|p.E742Nfs*12|1|0.21|ENSG00000084676|chr2:24707688-24707688|A/-|frameshift_variant	NCOA1|p.E742Nfs*12|1|0.21|ENSG00000084676|chr2:24707688-24707688|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	617.3569946289062	2	617.356754	1232.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.134	1	51.134	50.634	51.634	0								0	0	0	0.95507	1	19528	19528		3.5965	0.8613	1				31046	1449	19548	19653	29897	29897					0.09191285928613979
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	HCT116MG_D190212_S1	1	457.75067138671875	2	457.750724	913.486896	0.095885	4.3892E-05	0.30666	0.00014037	0.40254	0.00018426	457.7507840968894	32.613	0.26082	32.613	32.43	32.691	0					7	4	2	0	0	0	0.01389	1	12043	12043		103.75	10.926	1	48178000			31047	5205	19549	19654	29898	29898					0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	HCT116MG_D190212_S2	2	457.7510986328125	2	457.750724	913.486896	0.29943	0.00013706	0.39149	0.00017921	0.69092	0.00031627	457.75081244770325	32.874	0.31022	32.663	32.482	32.792	-0.21135					12	5	3	0	0	0	0.0090481	1	12181	12181		115.69	3.0988	1	227800000			31048	5205	19549	19654	29899	29899					0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	HCT116MG_D190212_S2	2	914.4957885742188	1	914.494172	913.486896	0.83744	0.00076583	0.5239	0.0004791	1.3613	0.0012449	914.4945304607303	32.874	0.20553	32.663	32.534	32.739	-0.21135					6	3	2	0	0	0	0.023938	1	12183	12183		92.491	31.134	1	67043000			31049	5205	19549	19654	29900	29900					0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	HCT116MG_D190212_S3	3	457.7509460449219	2	457.750724	913.486896	0.57878	0.00026494	-0.020033	-9.1699E-06	0.55875	0.00025577	457.75074768266376	32.923	0.26647	32.638	32.456	32.722	-0.28511					9	5	2	0	0	0	0.0090481	1	12087	12087		115.69	10.893	1	31319000			31050	5205	19549	19654	29901	29901					0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		nc|ENSG00000171566|O43660-2|PLRG1;ENSG00000171566|ENST00000499023|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	914.494172	913.486896	0.84949	0.00077685	0.27533	0.00025179	1.1248	0.0010286	914.4944762239702	32.613	0.15682	32.613	32.482	32.639	0	-0.025091	-9.8154E-05	NaN	92.491	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5839900			31051	5205	19549	19654							0.02669194517818596
SLTGRLDEV	9	Unmodified	_SLTGRLDEV_					0	0	0		nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	nc|ENSG00000166888|P42226-2|STAT6	nc|ENSG00000166888|P42226-2|STAT6	MULTI-MSMS	HCT116MG_D190212_S1	1	495.26666259765625	2	495.266739	988.518924	0.80284	0.00039762	-0.55216	-0.00027347	0.25067	0.00012415	495.2664616245529	37.49	0.25471	37.49	37.348	37.602	0					13	4	4	0	0	0	0.0096585	1	14012	14012		114.19	41.218	1	23173000			31052	4887	19550	19655	29902	29902					0.024205622009503713
SLTGRLDEV	9	Unmodified	_SLTGRLDEV_					0	0	0		nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	nc|ENSG00000166888|P42226-2|STAT6	nc|ENSG00000166888|P42226-2|STAT6	MULTI-MSMS	HCT116MG_D190212_S2	2	495.2663879394531	2	495.266739	988.518924	0.14341	7.1026E-05	-0.47794	-0.00023671	-0.33453	-0.00016568	495.2664126413088	37.541	0.35667	37.437	37.284	37.641	-0.10318					8	6	2	0	0	0	0.0096523	1	14085	14085		114.2	41.234	1	54645000			31053	4887	19550	19655	29903	29903					0.024205622009503713
SLTHFDSTLY	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLTHFDSTLY_					1	0	0			REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	613.3003540039062	2	613.290411	1224.56627	0.42039	0.00025782	0.10605	6.5039E-05	0.52644	0.00032286	613.2903731642425	46.144	0.61769	46.043	45.812	46.43	-0.1014					42	11	4	0	0	0	0.37629	1	17713	17713		43.858	11.073	1	637850000	+		31054	15959	19551	19656	29904	29904					-0.03703203318696069
SLTHFDSTLY	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLTHFDSTLY_					1	0	0			REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	613.2900390625	2	613.290411	1224.56627	0.66871	0.00041012	-0.1478	-9.0645E-05	0.52091	0.00031947	613.2902677322259	46.413	0.51737	46.101	45.922	46.439	-0.31237					37	10	5	0	0	0	0.2521	2	17373	17373;17490		54.774	18.392	1	219400000	+		31055	15959	19551	19656	29905;29906	29905					-0.03703203318696069
SLTHFDSTLY	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLTHFDSTLY_					1	0	0			REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	613.7918701171875	2	613.290411	1224.56627	0.85111	0.00052198	-0.32251	-0.00019779	0.52861	0.00032419	613.2901100981576	46.452	0.43938	46.08	45.941	46.38	-0.37134					33	11	4	0	0	0	0.2521	1	17125	17125		54.774	12.934	1	68752000	+		31056	15959	19551	19656	29907	29907					-0.03703203318696069
SLTIDRRVRGP	11	Unmodified	_SLTIDRRVRGP_					0	0	0			REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	635.37353515625	2	635.372935	1268.73132	0.62352	0.00039617	-0.52796	-0.00033545	0.095561	6.0717E-05	635.3726269707805	52.334	1.3904	52.147	51.369	52.76	-0.18725					61	26	3	0	0	0	0.73536	1	20296	20296		8.7454	0	1	20954000	+		31057	12424	19552	19657	29908	29908					0.1077007333160509
SLTIDRRVRGP	11	Unmodified	_SLTIDRRVRGP_					0	0	0			REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	635.372935	1268.73132	0.60356	0.00038349	-0.7135	-0.00045334	-0.10994	-6.985E-05	635.3723464690946	51.752	2.3221	51.752	50.42	52.742	0	-0.2713	-3.3324E-05	NaN	8.7454	111	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89968000	+		31058	12424	19552	19657							0.1077007333160509
SLTIGVILLTN	11	Unmodified	_SLTIGVILLTN_					0	0	0			REV__tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	REV__tr|U7STH8|U7STH8_FUSNUIroncomplextransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01352PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	572.0213623046875	2	572.352814	1142.69108	0.28431	0.00016273	1.8885	0.0010809	2.1728	0.0012436	572.3542825713969	57.205	0.51877	57.205	57.1	57.619	0					11	9	2	0	0	0	0.36397	1	22163	22163		8.7454	0	1	6684700	+		31059	17800	19553	19658	29909	29909					0.12543713888499042
SLTKGGAGLSP	11	Unmodified	_SLTKGGAGLSP_					0	0	0		ENST00000336095.10_1_20:3944626-3995914:-|nuORF	ENST00000336095.10_1_20:3944626-3995914:-|nuORF	ENST00000336095.10_1_20:3944626-3995914:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	494.27764892578125	2	494.277106	986.53966	0.32159	0.00015895	0.47322	0.0002339	0.79481	0.00039286	494.27726297425335	37.989	0.59274	37.688	37.5	38.092	-0.30137					35	19	3	0	0	0	0.50445	1	14016	14016		45.74	5.7902	1	16535000			31060	7192	19554	19659	29910	29910					0.04585152580614249
SLTKIKNRRKK	11	Unmodified	_SLTKIKNRRKK_					0	0	0			REV__INSL6|p.R205Kfs*7|1|0.42|ENSG00000120210|chr9:5163941-5163942|-/T|frameshift_variant	REV__INSL6|p.R205Kfs*7|1|0.42|ENSG00000120210|chr9:5163941-5163942|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	686.4481811523438	2	686.448977	1370.8834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.794	1	48.429	47.929	48.929	-0.365								0	0	0	0.95636	1	18078	18078		2.9952	0	1		+		31061	11689	19555	19660	29911	29911					0.21279474079165084
SLTLFLISLM	10	Unmodified	_SLTLFLISLM_					0	0	0		MALL|p.S66L|1|0.07|ENSG00000144063|chr2:110091679-110091679|G/A|missense_variant	MALL|p.S66L|1|0.07|ENSG00000144063|chr2:110091679-110091679|G/A|missense_variant	MALL|p.S66L|1|0.07|ENSG00000144063|chr2:110091679-110091679|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	569.3336791992188	2	569.333036	1136.65152	0.2593	0.00014763	0.043223	2.4608E-05	0.30252	0.00017224	569.3329323298996	49.091	2.6266	49.091	47.742	50.368	0					87	50	3	0	0	0	0.86862	1	18333	18333		6.2058	0	1	57642000			31062	9313	19556	19661	29912	29912					0.08865870613385596
SLTLFLISLM	10	Unmodified	_SLTLFLISLM_					0	0	0		MALL|p.S66L|1|0.07|ENSG00000144063|chr2:110091679-110091679|G/A|missense_variant	MALL|p.S66L|1|0.07|ENSG00000144063|chr2:110091679-110091679|G/A|missense_variant	MALL|p.S66L|1|0.07|ENSG00000144063|chr2:110091679-110091679|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	569.3336181640625	2	569.333036	1136.65152	0.43715	0.00024889	-0.45723	-0.00026031	-0.020075	-1.143E-05	569.3325337196849	50.175	1.4477	49.816	49.019	50.466	-0.35878					55	30	3	0	0	0	0.87945	1	18703	18703		3.5965	0	1	5739100			31063	9313	19556	19661	29913	29913					0.08865870613385596
SLVAFSVQLP	10	Unmodified	_SLVAFSVQLP_					0	0	0			REV__CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant	REV__CDCA2|p.N847Mfs*14|1|0.15|ENSG00000184661|chr8:25507200-25507200|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	530.8045043945312	2	530.8055	1059.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.708	1	53.519	53.019	54.019	-0.1894								0	0	0	0.13638	1	20660	20660		74.929	1.9611	1		+		31064	10131	19557	19662	29914	29914					0.0690320013713972
SLVAGKKLKY	10	Unmodified	_SLVAGKKLKY_					0	0	0		tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	553.8485717773438	2	553.850242	1105.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.061	1	56.061	55.561	56.561	0								0	0	0	0.94107	1	21543	21543		6.7232	0.51738	1				31065	18321	19558	19663	29915	29915					0.13731454816502264
SLVALSFFY	9	Unmodified	_SLVALSFFY_					0	0	0			REV__TMEM79|p.N297S|1|0.22|ENSG00000163472|chr1:156286392-156286392|A/G|missense_variant	REV__TMEM79|p.N297S|1|0.22|ENSG00000163472|chr1:156286392-156286392|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	523.782470703125	2	523.781493	1045.54843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.169	1	52.98	52.48	53.48	-0.18922								0	0	0	0.768	1	20441	20441		7.9102	0.62092	1		+		31066	17647	19559	19664	29916	29916					0.027481262170795162
SLVAPTRR	8	Unmodified	_SLVAPTRR_					0	0	0			REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF	REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	450.2748107910156	2	450.274701	898.534849	-0.027801	-1.2518E-05	-0.11968	-5.3887E-05	-0.14748	-6.6405E-05	450.2745317641641	49.776	0.41289	49.776	49.595	50.008	0					26	7	4	0	0	0	0.86564	1	18958	18958		2.5775	0	1	763250000	+		31067	16039	19560	19665	29917	29917					0.08152313228504227
SLVDASWEL	9	Unmodified	_SLVDASWEL_					0	0	0		ENST00000492437.1_1_1:231474120-231475626:+|nuORF;nc|ENSG00000010072|Q9H040-3|SPRTN;SPRTN|p.G222Afs*7|4|0.25|ENSG00000010072|chr1:231351510-231351510|A/-|frameshift_variant;nc|ENSG00000010072|Q9H040-2|SPRTN;SPRTN|p.F417Lfs*11|1|0.36|ENSG00000010072|chr1:231353138-231353138|T/-|frameshift_variant;ENSG00000010072|ENST00000295050|SPRTN	ENST00000492437.1_1_1:231474120-231475626:+|nuORF	ENST00000492437.1_1_1:231474120-231475626:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1019.57666015625	1	1019.5044	1018.49713	0.86881	0.00088576	-1.6059	-0.0016373	-0.73712	-0.0007515	1019.5030169467872	56.627	0.21278	56.445	56.312	56.524	-0.18261					5	3	2	0	0	0	0.065014	2	21870	21870;21879		67.344	21.323	1	22672000			31068	874	19561	19666	29918;29919	29918					-0.011382425476313074
SLVDGYFRL	9	Unmodified	_SLVDGYFRL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.K860Nfs*16|3|0.29|ENSG00000162434|chr1:64841314-64841314|T/-|frameshift_variant;ENST00000494904.1_1_1:65325735-65330472:-|nuORF;ENSG00000105397|ENST00000525621|TYK2	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	HCT116MG_D190212_S2	2	535.287841796875	2	535.287474	1068.5604	0.4907	0.00026267	0.40534	0.00021697	0.89604	0.00047964	535.2876069527258	55.487	0.25838	55.301	55.225	55.483	-0.18565					5	4	2	0	0	0	0.15273	1	21412	21412		47.749	9.7747	1	29026000			31069	4522	19562	19667	29920	29920					0.028857429602794582
SLVDIYSQL	9	Unmodified	_SLVDIYSQL_					0	0	0		nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	nc|ENSG00000166888|P42226-2|STAT6	nc|ENSG00000166888|P42226-2|STAT6	MULTI-MSMS	HCT116MG_D190212_S2	2	1037.5521240234375	1	1037.55135	1036.54408	0.74182	0.00076968	0.27123	0.00028141	1.013	0.0010511	1037.5515773226284	56.055	0.15343	55.873	55.796	55.949	-0.18261					4	2	2	0	0	0	0.0057285	1	21648	21648		131.27	15.576	1	33003000			31070	4887	19563	19668	29921	29921					0.02726617003509091
SLVDIYSQL	9	Unmodified	_SLVDIYSQL_					0	0	0		nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;STAT6|p.G815Efs*27|3|0.31|ENSG00000166888|chr12:57096672-57096672|C/-|frameshift_variant;ENSG00000166888|ENST00000300134|STAT6	nc|ENSG00000166888|P42226-2|STAT6	nc|ENSG00000166888|P42226-2|STAT6	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1037.55135	1036.54408	0.87244	0.0009052	0.50063	0.00051943	1.3731	0.0014246	1038.5551119115603	55.888	0.15312	55.888	55.811	55.964	0	0.0076616	0.00021332	NaN	131.27	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11816000			31071	4887	19563	19668							0.02726617003509091
SLVDLSRAE	9	Unmodified	_SLVDLSRAE_					0	0	0			REV__ENST00000445419.6_1_6:82904276-82914703:-|nuORF	REV__ENST00000445419.6_1_6:82904276-82914703:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	496.2309875488281	2	495.266739	988.518924	0.80284	0.00039762	-0.55216	-0.00027347	0.25067	0.00012415	495.2664616245529	37.49	0.25471	37.49	37.348	37.602	0					13	4	4	0	0	0	0.47809	1	13974	13974		18.146	1.0335	1	23173000	+		31072	10476	19564	19669	29922	29922					0.024205622009390027
SLVGASSLAV	10	Unmodified	_SLVGASSLAV_					0	0	0			REV__ENST00000460703.1_1_3:49848630-49848912:-|nuORF	REV__ENST00000460703.1_1_3:49848630-49848912:-|nuORF	MSMS	HCT116MG_D190212_S2	2	452.2606506347656	2	452.260925	902.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.778	1	36.663	36.163	37.163	-0.11478								0	0	0	0.78574	1	13764	13764		30.637	1.555	1		+		31073	13708	19565	19670	29923	29923					0.052143651776077604
SLVGRKGR	8	Unmodified	_SLVGRKGR_					0	0	0		ENST00000375799.7_1_1:16060425-16060638:+|nuORF	ENST00000375799.7_1_1:16060425-16060638:+|nuORF	ENST00000375799.7_1_1:16060425-16060638:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	436.7749328613281	2	436.774868	871.535184	-0.083596	-3.6513E-05	-1.1591	-0.00050625	-1.2427	-0.00054276	436.7743055803403	48.794	0.87765	48.794	48.511	49.389	0					49	16	5	0	0	0	0.85571	1	18783	18783		4.3292	1.44	1	3294099999.9999995			31074	7511	19566	19671	29924	29924					0.09427732948370249
SLVKKILKKGL	11	Unmodified	_SLVKKILKKGL_					0	0	0		ENSG00000230062|ENST00000565422|ANKRD66	ENSG00000230062|ENST00000565422|ANKRD66	ENSG00000230062|ENST00000565422|ANKRD66	MSMS	HCT116MG_D190212_S1	1	613.7866821289062	2	613.931566	1225.84858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.262	1	23.262	22.762	23.762	0								0	0	0	0.95954	1	8276	8276		1.3295	0	1				31075	6497	19567	19672	29925	29925					0.24468838218513156
SLVLDWMSVCT	11	Unmodified	_SLVLDWMSVCT_					0	0	0			REV__ENST00000600755.5_1_19:51376705-51380061:+|nuORF	REV__ENST00000600755.5_1_19:51376705-51380061:+|nuORF	MSMS	HCT116MG_D190212_S1	1	627.2981567382812	2	627.298867	1252.58318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.469	1	32.469	31.969	32.969	0								0	0	0	0.8787	1	11982	11982		22.736	2.2827	1		+		31076	16748	19568	19673	29926	29926					-0.03300742028773129
SLVLLVLRVKL	11	Unmodified	_SLVLLVLRVKL_					0	0	0		COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant	COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant	COL1A1|p.R304Vfs*237|1|0.57|ENSG00000108821|chr17:50196361-50196361|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	627.041259765625	2	626.939391	1251.86423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.368	1	44.368	43.868	44.868	0								0	0	0	0.95636	1	16784	16784		2.9952	1.6657	1				31077	515	19569	19674	29927	29927					0.24837124735540783
SLVPHNYGL	9	Unmodified	_SLVPHNYGL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	HCT116MG_D190212_S2	2	500.2669372558594	2	500.266542	998.51853	0.35403	0.00017711	0.57802	0.00028916	0.93205	0.00046627	500.2667999218621	42.279	0.25877	42.211	42.068	42.327	-0.068199					10	4	3	0	0	0	0.15273	1	16021	16021		47.749	7.7914	1	14551000			31078	3437	19570	19675	29928	29928					0.01921187271761937
SLVPHNYGL	9	Unmodified	_SLVPHNYGL_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	500.266542	998.51853	0.14143	7.0751E-05	0.042856	2.1439E-05	0.18428	9.219E-05	500.76798020222617	42.304	0.1562	42.304	42.226	42.383	0	0.046444	-0.00034429	NaN	47.749	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3613800			31079	3437	19570	19675							0.01921187271761937
SLVQMGENH	9	Unmodified	_SLVQMGENH_					0	0	0			REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	REV__AKAP9|p.Q3083Nfs*28|1|0.15|ENSG00000127914|chr7:92089389-92089390|-/TGAATATCAAGCAGCTATGGAATGCC|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	507.2685241699219	2	507.737291	1013.46003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.805	1	38.805	38.305	39.305	0								0	0	0	0.46109	1	14539	14539		30.637	3.7529	1		+		31080	9908	19571	19676	29929	29929					-0.0461623736501906
SLVQPPPG	8	Unmodified	_SLVQPPPG_					0	0	0		ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENST00000495579.5_1_6:32088425-32095984:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	794.4413452148438	1	794.44068	793.433404	0.97679	0.000776	0.23956	0.00019032	1.2164	0.00096632	794.4406352473658	26.308	0.36206	25.946	25.766	26.128	-0.36164					11	6	3	0	0	0	0.21487	1	9515	9515		70.716	13.244	1	34249000			31081	8382	19572	19677	29930	29930					0.028424418059557865
SLVRRLLAVY	10	Unmodified	_SLVRRLLAVY_					0	0	0		nc|ENSG00000092098|Q96EP0-3|RNF31;ENSG00000092098|ENST00000324103|RNF31;RNF31|p.A652T|1|0.15|ENSG00000092098|chr14:24151816-24151816|G/A|missense_variant;ENST00000491351.5_1_14:24616897-24626527:+|nuORF;nc|ENSG00000092098|Q96EP0-2|RNF31	nc|ENSG00000092098|Q96EP0-3|RNF31	nc|ENSG00000092098|Q96EP0-3|RNF31	MSMS	HCT116MG_D190212_S2	2	595.3732299804688	2	595.374415	1188.73428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.677	1	36.562	36.062	37.062	-0.11478								0	0	0	0.91906	1	13723	13723		11.64	0	1				31082	1574	19573	19678	29931	29931					0.1474594845642514
SLVSGFASIV	10	Unmodified	_SLVSGFASIV_					0	0	0			REV__DPYD|p.L523Sfs*13|1|0.32|ENSG00000188641|chr1:97515899-97515899|G/-|frameshift_variant	REV__DPYD|p.L523Sfs*13|1|0.32|ENSG00000188641|chr1:97515899-97515899|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	490.2771911621094	2	490.276575	978.538597	0.25357	0.00012432	0.2625	0.0001287	0.51607	0.00025302	490.2767301102974	52.884	0.20893	52.578	52.457	52.666	-0.30639					6	3	2	0	0	0	0.28012	1	20031	20031		52.268	8.496	1	2637600	+		31083	10408	19574	19679	29932	29932					0.048469382116991255
SLVTVRRDPTL	11	Unmodified	_SLVTVRRDPTL_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MSMS	HCT116MG_D190212_S4	4	628.8699340820312	2	628.869694	1255.72483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.792	1	44.418	43.918	44.918	-0.37326								0	0	0	0.94538	1	16506	16506		8.7454	0	1				31084	5584	19575	19680	29933	29933					0.10720135380211104
SLWFKPEEL	9	Unmodified	_SLWFKPEEL_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000570801.1_1_17:49245578-49248962:+|nuORF;ENSG00000243678|ENST00000512737|NME2	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S1	1	574.8030395507812	2	574.802957	1147.59136	0.49463	0.00028431	-0.19365	-0.00011131	0.30097	0.000173	574.8026699106836	54.917	0.15298	54.917	54.841	54.994	0					6	2	3	0	0	0	0.040027	1	21100	21100		79.596	39.647	1	59217000			31085	9654	19576	19681	29934	29934					0.02346896274525534
SLWFKPEEL	9	Unmodified	_SLWFKPEEL_					0	0	0		nc|ENSG00000243678|P22392-2|NME2;ENST00000570801.1_1_17:49245578-49248962:+|nuORF;ENSG00000243678|ENST00000512737|NME2	nc|ENSG00000243678|P22392-2|NME2	nc|ENSG00000243678|P22392-2|NME2	MULTI-MSMS	HCT116MG_D190212_S2	2	574.8033447265625	2	574.802957	1147.59136	0.34286	0.00019708	0.20683	0.00011889	0.54969	0.00031596	574.8029249479174	55.131	0.2028	54.943	54.816	55.019	-0.18797					8	3	3	0	0	0	0.0068427	1	21252	21252		121.53	50.4	1	193230000			31086	9654	19576	19681	29935	29935					0.02346896274525534
SLWGGDVVL	9	Unmodified	_SLWGGDVVL_					0	0	0		VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.I1913*|1|0.3|ENSG00000132549|chr8:99642246-99642246|A/-|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.L58*|1|0.2|ENSG00000132549|chr8:99038443-99038443|T/-|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-5|VPS13B;VPS13B|p.L515Nfs*12|1|0.06|ENSG00000132549|chr8:99135711-99135712|-/AAATGGGAAGAAAAAC|frameshift_variant	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	945.5042724609375	1	945.504009	944.496732	0.74177	0.00070135	-0.099909	-9.4464E-05	0.64186	0.00060688	945.5038514100806	57.568	0.20653	57.393	57.263	57.469	-0.17494					8	3	3	0	0	0	0.023611	1	22247	22247		92.822	52.374	1	82590000			31087	3192	19577	19682	29936	29936					0.022263825232016643
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant;COL4A5|p.F1520Vfs*34|1|0.04|ENSG00000188153|chrX:108692794-108692795|-/GTAATAAATATACTATA|frameshift_variant;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000470339.1_1_X:107683355-107812096:+|nuORF;COL4A5|p.N306Mfs*40|1|0.34|ENSG00000188153|chrX:108581005-108581005|A/-|frameshift_variant;ENST00000477429.1_1_X:107683355-107686177:+|nuORF	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	958.4631958007812	1	958.462872	957.455596	0.91197	0.00087409	-0.39887	-0.0003823	0.5131	0.00049178	958.4624782290063	43.731	0.46293	43.653	43.402	43.865	-0.078373					14	8	2	0	0	0	9.7949E-05	1	16587	16587		199.75	99.951	1	26199000			31088	525	19578	19683	29937	29937					-0.024833785162968525
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant;COL4A5|p.F1520Vfs*34|1|0.04|ENSG00000188153|chrX:108692794-108692795|-/GTAATAAATATACTATA|frameshift_variant;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000470339.1_1_X:107683355-107812096:+|nuORF;COL4A5|p.N306Mfs*40|1|0.34|ENSG00000188153|chrX:108581005-108581005|A/-|frameshift_variant;ENST00000477429.1_1_X:107683355-107686177:+|nuORF	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	958.4646606445312	1	958.462872	957.455596	0.83394	0.0007993	0.041555	3.9829E-05	0.87549	0.00083913	958.4627782688987	44.045	0.52036	43.739	43.448	43.968	-0.30627					20	9	3	0	0	0	9.7949E-05	1	16424	16424		199.75	99.951	1	12181000			31089	525	19578	19683	29938	29938					-0.024833785162968525
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant;COL4A5|p.F1520Vfs*34|1|0.04|ENSG00000188153|chrX:108692794-108692795|-/GTAATAAATATACTATA|frameshift_variant;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000470339.1_1_X:107683355-107812096:+|nuORF;COL4A5|p.N306Mfs*40|1|0.34|ENSG00000188153|chrX:108581005-108581005|A/-|frameshift_variant;ENST00000477429.1_1_X:107683355-107686177:+|nuORF	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	958.4639892578125	1	958.462872	957.455596	0.54095	0.00051848	0.052422	5.0245E-05	0.59337	0.00056873	958.4627491160985	44.023	0.36275	43.649	43.52	43.882	-0.37373					10	6	2	0	0	0	0.0058997	1	16215	16215		129.77	60.667	1	6033800			31090	525	19578	19683	29939	29939					-0.024833785162968525
SLWGTHVVV	9	Unmodified	_SLWGTHVVV_					0	0	0		MMADHC|p.R266C|1|0.31|ENSG00000168288|chr2:149570069-149570069|G/A|missense_variant;ENSG00000168288|ENST00000303319|MMADHC	MMADHC|p.R266C|1|0.31|ENSG00000168288|chr2:149570069-149570069|G/A|missense_variant	MMADHC|p.R266C|1|0.31|ENSG00000168288|chr2:149570069-149570069|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	499.0348205566406	2	499.276909	996.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.904	1	49.74	49.24	50.24	-0.16369								0	0	0	0.1044	1	19113	19113		54.774	12.934	1				31091	4997	19579	19684	29940	29940					0.04085777651425815
SLWIPACLP	9	Unmodified	_SLWIPACLP_					0	0	0		ENST00000373307.5_1_10:71164777-71168747:-|nuORF	ENST00000373307.5_1_10:71164777-71168747:-|nuORF	ENST00000373307.5_1_10:71164777-71168747:-|nuORF	MSMS	HCT116MG_D190212_S4	4	500.27008056640625	2	500.270238	998.525924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.581	1	38.199	37.699	38.699	-0.38163								0	0	0	0.71969	1	14145	14145		18.135	2.2878	1				31092	7475	19580	19685	29941	29941					0.02660203547816309
SLWKEVSEL	9	Unmodified	_SLWKEVSEL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	HCT116MG_D190212_S1	1	545.7927856445312	2	545.792589	1089.57063	0.62091	0.00033889	0.3973	0.00021684	1.0182	0.00055573	545.7926850966679	53.816	0.20509	53.816	53.668	53.873	0					6	3	2	0	0	0	0.0059958	1	20628	20628		128.93	50.204	1	53575000			31093	953	19581	19686	29942	29942					0.029423058948623293
SLWKEVSEL	9	Unmodified	_SLWKEVSEL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7930908203125	2	545.792589	1089.57063	0.43683	0.00023842	0.44888	0.000245	0.88571	0.00048342	545.7927640806649	54.108	0.25727	53.919	53.79	54.048	-0.1894					11	4	3	0	0	0	0.0046822	1	20848	20848		140.63	61.905	1	107750000			31094	953	19581	19686	29943	29943					0.029423058948623293
SLWPPGVGGVH	11	Unmodified	_SLWPPGVGGVH_					0	0	0		ENST00000475022.1_1_19:7970793-7971186:+|nuORF	ENST00000475022.1_1_19:7970793-7971186:+|nuORF	ENST00000475022.1_1_19:7970793-7971186:+|nuORF	MSMS	HCT116MG_D190212_S1	1	369.1969299316406	3	369.197819	1104.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.715	1	20.715	20.215	21.215	0								0	0	0	0.95023	1	7255	7255		2.8433	0.3448	1				31095	8197	19582	19687	29944	29944					0.023525650544115706
SLWSHSSNP	9	Unmodified	_SLWSHSSNP_					0	0	0			REV__ENST00000464733.5_1_1:110198981-110200115:+|nuORF	REV__ENST00000464733.5_1_1:110198981-110200115:+|nuORF	MSMS	HCT116MG_D190212_S2	2	507.7350158691406	2	507.735606	1013.45666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.954	1	38.869	38.369	39.369	-0.084618								0	0	0	0.32965	1	14646	14646		37.974	11.706	1		+		31096	15811	19583	19688	29945	29945					-0.0495316414737772
SLYDNQITT	9	Unmodified	_SLYDNQITT_					0	0	0		nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2;nc|ENSG00000187122|O75093-2|SLIT1;SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant;ENSG00000187122|ENST00000266058|SLIT1	nc|ENSG00000145147|O94813-3|SLIT2;SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant	SLIT1|p.D1462Tfs*42|1|0.21|ENSG00000187122|chr10:97001333-97001333|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	352.1729431152344	3	352.173228	1053.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.956	1	59.685	59.185	60.185	-0.27156								0	0	0	0.7696	1	22577	22577		2.2828	0	1				31097	3898;5928	19584	19689	29946	29946					-0.02675447898582206
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S1	1	1098.510986328125	1	1098.51022	1097.50294	0.69304	0.00076131	-0.15762	-0.00017315	0.53542	0.00058817	1098.5100091411682	45.844	0.20982	45.844	45.713	45.922	0					6	3	2	0	0	0	0.0046012	1	17386	17386		141.83	105.7	1	23902000			31098	5757	19585	19690	29947	29947					-0.041911440359626795
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	HCT116MG_D190212_S2	2	1098.5084228515625	1	1098.51022	1097.50294	0.69547	0.00076398	-0.26998	-0.00029657	0.42549	0.00046741	1098.5099008169525	45.944	0.41032	45.842	45.658	46.068	-0.1014					17	7	3	0	0	0	0.0035556	1	17479	17479		172.91	118.13	1	109720000			31099	5757	19585	19690	29948	29948					-0.041911440359626795
SLYEDDITF	9	Unmodified	_SLYEDDITF_					0	0	0		ENST00000529462.5_1_8:145637924-145638077:-|nuORF;nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4	ENST00000529462.5_1_8:145637924-145638077:-|nuORF	ENST00000529462.5_1_8:145637924-145638077:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1102.492431640625	1	1102.4939	1101.48662	0.33452	0.00036881	-1.2772	-0.0014081	-0.9427	-0.0010393	1102.4925741208963	54.303	0.20908	54.007	53.877	54.086	-0.29587					6	3	2	0	0	0	0.14972	1	20604	20604		48.346	19.859	1	2261800			31100	4000	19586	19691	29949	29949					-0.060062699927357244
SLYEDDITF	9	Unmodified	_SLYEDDITF_					0	0	0		ENST00000529462.5_1_8:145637924-145638077:-|nuORF;nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4	ENST00000529462.5_1_8:145637924-145638077:-|nuORF	ENST00000529462.5_1_8:145637924-145638077:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1102.4939	1101.48662	0.62261	0.00068642	0.034338	3.7858E-05	0.65695	0.00072428	1102.4937396069352	54.16	0.20593	53.971	53.842	54.048	-0.1894	-0.018458	0.00015031	NaN	48.346	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23123000			31101	4000	19586	19691							-0.060062699927357244
SLYFKKKF	8	Unmodified	_SLYFKKKF_					0	0	0		DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;ENST00000553966.5_1_14:59814299-59830444:+|nuORF;nc|ENSG00000100592|Q9Y4D1-3|DAAM1	DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant	DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	354.21209716796875	3	354.211177	1059.6117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.636	1	32.256	31.756	32.756	-0.37924								0	0	0	0.8837	1	11894	11894		1.6526	0.45928	1				31102	635	19587	19692	29950	29950					0.0842811172499296
SLYFTSFQNVR	11	Unmodified	_SLYFTSFQNVR_					0	0	0			REV__ENST00000520917.1_1_8:141749133-141749181:-|nuORF	REV__ENST00000520917.1_1_8:141749133-141749181:-|nuORF	MSMS	HCT116MG_D190212_S3	3	681.34619140625	2	681.346052	1360.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.374	1	35.075	34.575	35.575	-0.29922								0	0	0	0.94416	1	13055	13055		9.3831	0	1		+		31103	16234	19588	19693	29951	29951					0.011638561092240707
SLYGGNAVV	9	Unmodified	_SLYGGNAVV_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	HCT116MG_D190212_S3	3	879.4568481445312	1	879.457059	878.449782	0.97051	0.00085352	-0.26454	-0.00023265	0.70597	0.00062087	879.4565331159222	40.973	0.26051	40.671	40.527	40.788	-0.30185					7	4	2	0	0	0	0.063511	1	15247	15247		68.081	22.06	1	6039800			31104	5662	19589	19694	29952	29952					0.005695229720458883
SLYGGNAVVEL	11	Unmodified	_SLYGGNAVVEL_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	HCT116MG_D190212_S2	2	561.2957153320312	2	561.295496	1120.57644	0.56879	0.00031926	-0.20269	-0.00011377	0.3661	0.00020549	561.295345946488	52.395	0.6189	52.208	52.038	52.657	-0.18726					16	11	3	0	0	0	0.22179	1	20139	20139		72.968	12.894	1	27853000			31105	5662	19590	19695	29953	29953					0.02097404406526948
SLYGGNAVVEL	11	Unmodified	_SLYGGNAVVEL_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	HCT116MG_D190212_S2	2	1121.58447265625	1	1121.58372	1120.57644	0.72115	0.00080883	0.34966	0.00039217	1.0708	0.001201	1121.5838856494622	52.406	0.20521	52.219	52.09	52.295	-0.18725					6	3	2	0	0	0	0.57532	1	20159	20159		38.176	17.722	1	10948000			31106	5662	19590	19695	29954	29954					0.02097404406526948
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	HCT116MG_D190212_S1	1	924.5046997070312	1	924.503674	923.496398	0.91886	0.00084949	0.10941	0.00010115	1.0283	0.00095063	924.503643672856	52.254	0.30955	52.254	52.073	52.383	0					17	5	4	0	0	0	0.050578	1	19962	19962		74.423	2.5005	1	126400000			31107	4264	19591	19696	29955	29955					0.03158962803343002
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	HCT116MG_D190212_S2	2	924.5046997070312	1	924.503674	923.496398	1.0884	0.0010063	-0.14261	-0.00013184	0.94582	0.00087442	924.5034321882977	52.452	0.72156	52.265	52.038	52.76	-0.18725					35	13	4	0	0	0	0.0063744	1	20133	20133		125.62	29.514	1	523670000			31108	4264	19591	19696	29956	29956					0.03158962803343002
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	HCT116MG_D190212_S4	4	924.5046997070312	1	924.503674	923.496398	0.78213	0.00072308	0.030327	2.8037E-05	0.81246	0.00075112	924.5036573539788	52.719	0.31256	52.379	52.197	52.509	-0.34023					9	5	2	0	0	0	0.035914	1	19667	19667		81.613	33.267	1	4538100			31109	4264	19591	19696	29957	29957					0.03158962803343002
SLYHHLHVA	9	Unmodified	_SLYHHLHVA_					0	0	0		ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	MULTI-MSMS	HCT116MG_D190212_S2	2	539.2863159179688	2	538.785433	1075.55631	0.38253	0.0002061	-0.34411	-0.0001854	0.038427	2.0704E-05	539.2863213566601	44.063	0.35928	43.984	43.762	44.121	-0.078373					17	6	3	0	0	0	0.34272	1	16753	16753		28.487	2.2187	1	22650000			31110	1357	19592	19697	29958	29958					0.021556982572292327
SLYIRILYVML	11	Unmodified	_SLYIRILYVML_					0	0	0		ENST00000425128.6_1_3:27418116-27418206:-|nuORF	ENST00000425128.6_1_3:27418116-27418206:-|nuORF	ENST00000425128.6_1_3:27418116-27418206:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	692.4068603515625	2	692.407066	1382.79958	0.64456	0.0004463	-0.47051	-0.00032579	0.17405	0.00012051	692.4065190690666	52.524	1.9611	52.337	51.677	53.638	-0.18725					59	37	2	0	0	0	0.73364	1	20143	20143		9.3831	0.63772	1	18147000			31111	7809	19593	19698	29959	29959					0.12349181867239167
SLYIRILYVML	11	Unmodified	_SLYIRILYVML_					0	0	0		ENST00000425128.6_1_3:27418116-27418206:-|nuORF	ENST00000425128.6_1_3:27418116-27418206:-|nuORF	ENST00000425128.6_1_3:27418116-27418206:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	692.407066	1382.79958	0.71693	0.00049641	-0.73098	-0.00050613	-0.014047	-9.726E-06	692.4062740746456	52.012	2.7319	52.012	50.833	53.565	0	-0.16242	-9.4606E-05	NaN	9.3831	84	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58405000			31112	7809	19593	19698							0.12349181867239167
SLYKLLLQL	9	Unmodified	_SLYKLLLQL_					0	0	0			REV__nc|ENSG00000211795|A0A0B4J262|TRAV8-6	REV__nc|ENSG00000211795|A0A0B4J262|TRAV8-6	MSMS	HCT116MG_D190212_S4	4	364.2326965332031	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.922	1	57.633	57.133	58.133	-0.28879								0	0	0	0.76998	1	21755	21755		0.96228	0.33545	1		+		31113	17282	19594	19699	29960	29960					0.13852936584999043
SMADIPLGFGV	11	Unmodified	_SMADIPLGFGV_					0	0	0		ENST00000485801.1_1_3:132120486-132120636:+|nuORF;ENSG00000132603|ENST00000254940|NIP7	ENST00000485801.1_1_3:132120486-132120636:+|nuORF	ENST00000485801.1_1_3:132120486-132120636:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	553.781494140625	2	553.781167	1105.54778	0.40331	0.00022335	0.57635	0.00031917	0.97967	0.00054252	553.781735692927	57.757	0.46915	57.582	57.418	57.887	-0.17494					11	8	2	0	0	0	0.038239	1	22326	22326		118.89	82.768	1	12315000			31114	3194	19595	19700	29961	29961					-0.0007703649425820913
SMCDEMVT	8	Unmodified	_SMCDEMVT_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.R532Pfs*6|1|0.14|ENSG00000214655|chr10:73792129-73792130|-/C|frameshift_variant;ZSWIM8|p.P689Lfs*46|1|0.15|ENSG00000214655|chr10:73792600-73792600|C/-|frameshift_variant	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MSMS	HCT116MG_D190212_S1	1	458.16571044921875	2	458.166464	914.318375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.549	1	58.549	58.049	59.049	0								0	0	0	0.8837	1	22557	22557		0.69038	0	1				31115	6436	19596	19701	29962	29962					-0.1422111477402268
SMDAHPNRY	9	Unmodified	_SMDAHPNRY_					0	0	0		AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2	AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	545.7732543945312	2	545.740365	1089.46618	0.37655	0.0002055	-0.079396	-4.333E-05	0.29715	0.00016217	545.7404484528398	19.417	0.2081	19.417	19.287	19.495	0					5	3	2	0	0	0	0.15759	1	6733	6733		47.749	34.706	1	4426400			31116	77	19597	19702	29963	29963					-0.07497719133516512
SMDAHPNRY	9	Unmodified	_SMDAHPNRY_					0	0	0		AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2	AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7405395507812	2	545.740365	1089.46618	0.40408	0.00022053	0.086316	4.7106E-05	0.4904	0.00026763	545.7403631262727	20.062	0.36345	19.687	19.506	19.869	-0.37503					11	6	2	0	0	0	0.010825	1	6997	6997		121.53	101.08	1	31340000			31117	77	19597	19702	29964	29964					-0.07497719133516512
SMDAHPNRY	9	Unmodified	_SMDAHPNRY_					0	0	0		AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2	AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	364.16253662109375	3	364.162669	1089.46618	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.134	1	19.759	19.259	20.259	-0.37503								0	0	0	0.55657	1	7021	7021		26.021	15.221	1				31118	77	19597	19702	29965	29965					-0.07497719133516512
SMDAHPNRY	9	Unmodified	_SMDAHPNRY_					0	0	0		AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2	AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	545.7406005859375	2	545.740365	1089.46618	0.40518	0.00022112	0.62205	0.00033948	1.0272	0.0005606	545.7407625151337	19.068	0.36392	19.137	18.875	19.239	0.069157					8	6	2	0	0	0	0.34508	1	6549	6549		34.402	17.459	1	6217100			31119	77	19597	19702	29966	29966					-0.07497719133516512
SMDAHPSRY	9	Unmodified	_SMDAHPSRY_					0	0	0		nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000092847|ENST00000373204|AGO1;ENSG00000126070|ENST00000373191|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	MULTI-MSMS	HCT116MG_D190212_S2	2	532.2350463867188	2	532.234916	1062.45528	0.35771	0.00019039	-0.23782	-0.00012658	0.11989	6.3808E-05	532.2348904595354	20.265	0.26088	19.886	19.709	19.969	-0.37949					10	4	3	0	0	0	0.0064416	1	7079	7079		125.04	90.935	1	21958000			31120	1588	19598	19703	29967	29967					-0.07345121507773911
SMDAHPSRY	9	Unmodified	_SMDAHPSRY_					0	0	0		nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000092847|ENST00000373204|AGO1;ENSG00000126070|ENST00000373191|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	MULTI-MSMS	HCT116MG_D190212_S3	3	532.2351684570312	2	532.234916	1062.45528	0.43988	0.00023412	0.051607	2.7467E-05	0.49149	0.00026159	532.234932872783	19.248	0.26015	19.307	19.178	19.438	0.05983					8	4	2	0	0	0	0.019537	2	6612	6600;6612		96.936	71.536	1	11360000			31121	1588	19598	19703	29968;29969	29969					-0.07345121507773911
SMDAHPSRY	9	Unmodified	_SMDAHPSRY_					0	0	0		nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000092847|ENST00000373204|AGO1;ENSG00000126070|ENST00000373191|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	MULTI-MSMS	HCT116MG_D190212_S3	3	355.1589050292969	3	355.159036	1062.45528	-0.1276	-4.5319E-05	0.0061245	2.1752E-06	-0.12148	-4.3143E-05	355.15895119781396	19.265	0.20831	19.325	19.229	19.438	0.059828					6	3	2	0	0	0	0.45684	1	6615	6615		23.801	14.418	1	4349300			31122	1588	19598	19703	29970	29970					-0.07345121507773911
SMDAHPSRY	9	Unmodified	_SMDAHPSRY_					0	0	0		nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000092847|ENST00000373204|AGO1;ENSG00000126070|ENST00000373191|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	MULTI-MSMS	HCT116MG_D190212_S4	4	532.2348022460938	2	532.234916	1062.45528	0.43597	0.00023204	-0.036604	-1.9482E-05	0.39936	0.00021255	532.2348909666032	19.706	0.30212	19.512	19.382	19.684	-0.19367					8	5	3	0	0	0	0.17423	1	6704	6704		43.982	20.833	1	2005700			31123	1588	19598	19703	29971	29971					-0.07345121507773911
SMDAHPSRY	9	Unmodified	_SMDAHPSRY_					0	0	0		nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000092847|ENST00000373204|AGO1;ENSG00000126070|ENST00000373191|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	MULTI-MATCH	HCT116MG_D190212_S1	1		2	532.234916	1062.45528	0.22154	0.00011791	0.51376	0.00027344	0.73531	0.00039136	532.2350808221726	19.574	0.15656	19.574	19.495	19.652	0	-0.15599	0.00044496	NaN	125.04	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2189600			31124	1588	19598	19703							-0.07345121507773911
SMDEKVELY	9	Unmodified	_SMDEKVELY_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	HCT116MG_D190212_S1	1	557.2604370117188	2	557.260265	1112.50598	0.19831	0.00011051	0.85778	0.00047801	1.0561	0.00058852	557.2605679621247	39.029	0.25991	39.029	38.903	39.163	0					9	4	3	0	0	0	0.051033	1	14658	14658		74.2	28.179	1	24035000			31125	3127	19599	19704	29972	29972					-0.04577636973431254
SMDEKVELY	9	Unmodified	_SMDEKVELY_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	HCT116MG_D190212_S2	2	557.2603149414062	2	557.260265	1112.50598	0.46738	0.00026045	-0.55154	-0.00030735	-0.084161	-4.69E-05	557.2599227552677	39.02	0.2062	38.935	38.857	39.063	-0.084618					5	3	2	0	0	0	0.26031	1	14701	14701		34.932	12.196	1	13963000			31126	3127	19599	19704	29973	29973					-0.04577636973431254
SMDEKVELY	9	Unmodified	_SMDEKVELY_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	HCT116MG_D190212_S3	3	557.2603149414062	2	557.260265	1112.50598	0.4087	0.00022775	-0.10726	-5.9769E-05	0.30144	0.00016798	557.2600355177393	39.305	0.2676	39.004	38.872	39.14	-0.30137					10	4	3	0	0	0	0.019537	1	14591	14591		96.936	50.915	1	25847000			31127	3127	19599	19704	29974	29974					-0.04577636973431254
SMDEKVELY	9	Unmodified	_SMDEKVELY_					0	0	0		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	HCT116MG_D190212_S4	4	557.2603759765625	2	557.260265	1112.50598	0.36458	0.00020316	0.040039	2.2312E-05	0.40461	0.00022548	557.2602596721573	39.454	0.21522	39.074	38.884	39.1	-0.38055					6	4	2	0	0	0	0.10482	1	14503	14503		57.249	19.275	1	4273800			31128	3127	19599	19704	29975	29975					-0.04577636973431254
SMDEKVELY	9	Oxidation (M)	_SM(Oxidation (M))DEKVELY_		SM(1)DEKVELY		SM(46)DEKVELY	0	0	1		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MSMS	HCT116MG_D190212_S3	3	565.2587890625	2	565.257722	1128.50089	0.50976	0.00028814	0.61442	0.00034731	1.1242	0.00063545	565.2582154098341	35.126	0.2069	34.829	34.7	34.907	-0.29707					6	3	2	0	0	0	0.16285	1	12983	12983		45.74	13.434	1	5610600			31129	3127	19599	19705	29976	29976		73			-0.05821940836062822
SMDEKVELY	9	Oxidation (M)	_SM(Oxidation (M))DEKVELY_					0	0	1		ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	ENSG00000131143|ENST00000253452|COX4I1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	565.257722	1128.50089	0.44051	0.000249	0.49402	0.00027925	0.93453	0.00052825	565.7593691160935	35.236	0.1553	34.85	34.75	34.905	-0.38605	0.010225	-5.7654E-05	NaN	45.74	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1640600			31130	3127	19599	19705				73			-0.05821940836062822
SMFEFSEKL	9	Unmodified	_SMFEFSEKL_					0	0	0		ENSG00000174738|ENST00000312521|NR1D2;ENST00000492552.5_1_3:23987629-24018907:+|nuORF	ENSG00000174738|ENST00000312521|NR1D2	ENSG00000174738|ENST00000312521|NR1D2	MULTI-SECPEP	HCT116MG_D190212_S1	1	559.3217163085938	2	559.26535	1116.51615	0.5029	0.00028126	-0.80366	-0.00044946	-0.30075	-0.0001682	559.2649135495385	52.82	0.15475	52.82	52.742	52.897	0					4	2	2	0	0	0	0.07138	1	20217	20217		67.838	25.883	1	10973000			31131	5344	19600	19706	29977	29977					-0.037450292482162695
SMFGAGLTV	9	Unmodified	_SMFGAGLTV_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	HCT116MG_D190212_S1	1	882.4398803710938	1	882.438966	881.431689	0.81615	0.0007202	0.4491	0.0003963	1.2653	0.0011165	882.4390964062811	54.868	0.20373	54.868	54.739	54.943	0					7	3	3	0	0	0	0.071351	1	21081	21081		64.236	26.262	1	62842000			31132	2576	19601	19707	29978	29978					-0.013769352743224772
SMFGAGLTV	9	Unmodified	_SMFGAGLTV_					0	0	0		ENSG00000117410|ENST00000472174|ATP6V0B;nc|ENSG00000117410|Q99437-2|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	ENSG00000117410|ENST00000472174|ATP6V0B	MULTI-MSMS	HCT116MG_D190212_S2	2	882.4403076171875	1	882.438966	881.431689	0.80519	0.00071053	0.10866	9.5885E-05	0.91385	0.00080642	882.4392194856523	55.08	0.25395	54.892	54.765	55.019	-0.18797					11	4	4	0	0	0	0.016134	1	21240	21240		100.37	58.532	1	168260000			31133	2576	19601	19707	29979	29979					-0.013769352743224772
SMFGKLIDL	9	Unmodified	_SMFGKLIDL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	HCT116MG_D190212_S2	2	512.3500366210938	2	512.280803	1022.54705	0.35688	0.00018282	0.10615	5.4376E-05	0.46302	0.0002372	512.280507275204	56.52	0.15846	56.338	56.259	56.418	-0.18261					6	2	3	0	0	0	0.035298	1	21821	21821		81.915	22.547	1	20761000			31134	3570	19602	19708	29980	29980					0.03668168856700049
SMFGKLIDL	9	Unmodified	_SMFGKLIDL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MATCH	HCT116MG_D190212_S1	1		2	512.280803	1022.54705	0.38033	0.00019483	-0.48597	-0.00024895	-0.10564	-5.4117E-05	512.2804167340624	56.454	0.15411	56.454	56.326	56.48	0	0.058182	-0.00012543	NaN	81.915	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33403000			31135	3570	19602	19708							0.03668168856700049
SMGMEDTF	8	Unmodified	_SMGMEDTF_					0	0	0		SERPINB2|p.A332T|1|0.44|ENSG00000197632|chr18:63903051-63903051|G/A|missense_variant	SERPINB2|p.A332T|1|0.44|ENSG00000197632|chr18:63903051-63903051|G/A|missense_variant	SERPINB2|p.A332T|1|0.44|ENSG00000197632|chr18:63903051-63903051|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	459.1720275878906	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.852	1	2.8116	2.3116	3.3116	-0.040353								0	0	0	0.8837	1	915	915		0.79363	0	1				31136	18144	19603	19709	29981	29981					-0.1308575503933298
SMLEDVQRA	9	Unmodified	_SMLEDVQRA_					0	0	0		RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant;RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant;ENSG00000106344|ENST00000223073|RBM28	RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	524.7581176757812	2	524.758223	1047.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.679	1	35.536	35.036	36.036	-0.14245								0	0	0	0.57787	1	13317	13317		24.991	0.31707	1				31137	2071	19604	19710	29982	29982					-0.019956816764988616
SMLEDVQRA	9	Unmodified	_SMLEDVQRA_					0	0	0		RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant;RBM28|p.M599*|2|0.24|ENSG00000106344|chr7:128315014-128315014|T/-|frameshift_variant;ENSG00000106344|ENST00000223073|RBM28	RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	RBM28|p.A107Pfs*10|1|0.32|ENSG00000106344|chr7:128339281-128339281|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	524.24072265625	2	524.758223	1047.50189	0.63722	0.00033439	-2.2272	-0.0011687	-1.59	-0.00083436	524.7569943462233	35.87	0.1762	35.484	35.395	35.572	-0.38605					6	5	2	0	0	0	0.1898	1	13117	13117		31.268	5.0002	1	3468100			31138	2071	19604	19710	29983	29983					-0.019956816764988616
SMLEPVPEL	9	Unmodified	_SMLEPVPEL_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	HCT116MG_D190212_S2	2	1014.6196899414062	1	1014.51761	1013.51033	0.68112	0.000691	-0.89541	-0.00090841	-0.21429	-0.0002174	1014.516647819266	55.131	0.25372	54.943	54.867	55.121	-0.18797					5	4	2	0	0	0	0.027492	1	21275	21275		88.904	36.635	1	14670000			31139	3115	19605	19711	29984	29984					0.004118722401244668
SMMDPNHFL	9	Unmodified	_SMMDPNHFL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	HCT116MG_D190212_S1	1	546.2365112304688	2	546.23607	1090.45759	0.38036	0.00020777	0.10054	5.4918E-05	0.4809	0.00026269	546.2362050588602	49.949	0.30891	49.949	49.802	50.111	0					8	5	2	0	0	0	0.069315	1	19069	19069		65.235	41.214	1	11342000			31140	950	19606	19712	29985	29985					-0.08402409094333052
SMMDPNHFL	9	Unmodified	_SMMDPNHFL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2364501953125	2	546.23607	1090.45759	0.32288	0.00017637	0.012142	6.6324E-06	0.33502	0.000183	546.2360795178521	50.182	0.35793	50.01	49.78	50.138	-0.1719					11	6	2	0	0	0	0.020353	2	19219	19181;19219		96.111	63.805	1	82335000			31141	950	19606	19712	29986;29987	29987					-0.08402409094333052
SMMDVDHQI	9	Unmodified	_SMMDVDHQI_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000508451.1_1_5:10250422-10254994:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	HCT116MG_D190212_S1	1	538.2308349609375	2	538.230984	1074.44742	-0.30737	-0.00016544	-0.40081	-0.00021573	-0.70818	-0.00038117	538.2309633098959	38.41	0.26083	38.41	38.227	38.488	0					10	4	3	0	0	0	0.014023	1	14386	14386		103.42	70.634	1	24035000			31142	4090	19607	19713	29988	29988					-0.08683016819554723
SMMDVDHQI	9	Unmodified	_SMMDVDHQI_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000508451.1_1_5:10250422-10254994:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	HCT116MG_D190212_S2	2	538.2312622070312	2	538.230984	1074.44742	0.40719	0.00021916	-0.051346	-2.7636E-05	0.35584	0.00019152	538.2312499309812	38.424	0.26175	38.331	38.167	38.428	-0.093006					7	4	2	0	0	0	0.24534	1	14456	14456		36.506	11.832	1	16161000			31143	4090	19607	19713	29989	29989					-0.08683016819554723
SMMGELYEDT	10	Unmodified	_SMMGELYEDT_					0	0	0			REV__ENSG00000101335|ENST00000279022|MYL9	REV__ENSG00000101335|ENST00000279022|MYL9	MSMS	HCT116MG_D190212_S2	2	588.0086669921875	2	588.23339	1174.45223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.963	1	40.893	40.393	41.393	-0.069626								0	0	0	0.90892	1	15463	15463		13.906	3.0821	1		+		31144	11121	19608	19714	29990	29990					-0.1280217746748349
SMNTHLKAV	9	Unmodified	_SMNTHLKAV_					0	0	0		ENST00000402743.2_1_1:44587827-44588175:-|nuORF;ENSG00000167088|ENST00000300413|SNRPD1	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	500.765625	2	500.765852	999.51715	0.31237	0.00015642	0.23653	0.00011845	0.5489	0.00027487	501.2677539398911	25.51	0.26084	25.51	25.353	25.614	0					7	4	2	0	0	0	0.056114	1	9203	9203		71.708	29.868	1	4563300			31145	4904	19609	19715	29991	29991					0.017372299113617373
SMNTHLKAV	9	Unmodified	_SMNTHLKAV_					0	0	0		ENST00000402743.2_1_1:44587827-44588175:-|nuORF;ENSG00000167088|ENST00000300413|SNRPD1	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	MSMS	HCT116MG_D190212_S2	2	500.7663269042969	2	500.765852	999.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.033	1	25.664	25.164	26.164	-0.36914								0	0	0	0.10279	1	9401	9401		55.235	25.01	1				31146	4904	19609	19715	29992	29992					0.017372299113617373
SMPDFDLHL	9	Unmodified	_SMPDFDLHL_					0	0	0		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	537.7499389648438	2	537.749867	1073.48518	0.537	0.00028877	-0.3749	-0.00020161	0.16209	8.7166E-05	537.7497414771462	55.07	0.25415	55.07	54.943	55.197	0					9	4	3	0	0	0	0.19218	1	21152	21152		42.095	18.946	1	43458000			31147	82	19610	19716	29993	29993					-0.04862182562465023
SMPDFDLHL	9	Unmodified	_SMPDFDLHL_					0	0	0		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7501220703125	2	537.749867	1073.48518	0.46966	0.00025256	-0.026049	-1.4008E-05	0.44361	0.00023855	537.7498019810256	55.232	0.40643	55.044	54.867	55.273	-0.18797					16	7	3	0	0	0	0.1037	1	21294	21294		57.471	27.247	1	110100000			31148	82	19610	19716	29994	29994					-0.04862182562465023
SMPDFDLHL	9	Oxidation (M)	_SM(Oxidation (M))PDFDLHL_		SM(1)PDFDLHL		SM(42)PDFDLHL	0	0	1		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7470703125	2	545.747324	1089.4801	0.45744	0.00024965	0.0090845	4.9578E-06	0.46653	0.0002546	545.7472573081438	50.992	0.56819	50.813	50.552	51.12	-0.17869					14	10	2	0	0	0	0.19218	1	19600	19600		42.095	26.247	1	10940000			31149	82	19610	19717	29995	29995		0			-0.06106486425073854
SMPEQAHKV	9	Unmodified	_SMPEQAHKV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	HCT116MG_D190212_S1	1	513.7551879882812	2	513.755484	1025.49641	0.29389	0.00015099	-0.1245	-6.396E-05	0.16939	8.7027E-05	513.755197882888	18.792	0.36496	18.792	18.662	19.027	0					8	6	2	0	0	0	0.22946	1	6514	6514		38.176	11.907	1	2696200			31150	1859	19611	19718	29996	29996					-0.015313604683115045
SMPEQAHKV	9	Unmodified	_SMPEQAHKV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.D678Efs*7|1|0.07|ENSG00000102910|chr16:48347601-48347602|-/GT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7554321289062	2	513.755484	1025.49641	0.22246	0.00011429	-0.51912	-0.0002667	-0.29666	-0.00015241	513.7552301849692	19.531	0.36397	19.161	18.94	19.304	-0.3695					11	6	2	0	0	0	0.22946	1	6791	6791		38.176	5.8701	1	7720100			31151	1859	19611	19718	29997	29997					-0.015313604683115045
SMSADVPLV	9	Oxidation (M)	_SM(Oxidation (M))SADVPLV_		SM(1)SADVPLV		SM(97)SADVPLV	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S1	1	934.4544677734375	1	934.45501	933.447733	0.77958	0.00072848	-0.12272	-0.00011468	0.65686	0.00061381	934.4547432795035	42.874	0.31273	42.874	42.639	42.951	0					7	5	2	0	0	0	0.019399	2	16176	16095;16176		97.075	64.769	1	6366700			31152	3198	19612	19719	29998;29999	29999		76			-0.0216527382805225
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S1	1	918.4592895507812	1	918.460095	917.452819	0.79603	0.00073112	-0.63913	-0.00058701	0.1569	0.00014411	918.4594293297099	48.845	0.30836	48.845	48.666	48.974	0					9	5	2	0	0	0	0.014796	1	18600	18600		101.72	57.315	1	39211000			31153	3198	19612	19720	30000	30000					-0.00920969965443419
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S2	2	918.4605712890625	1	918.460095	917.452819	0.73035	0.00067079	0.039078	3.5892E-05	0.76943	0.00070669	918.4601701305286	49.013	0.30273	48.859	48.682	48.985	-0.15405					11	5	3	0	0	0	0.014796	1	18747	18747		101.72	57.315	1	171690000			31154	3198	19612	19720	30001	30001					-0.00920969965443419
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	HCT116MG_D190212_S3	3	918.4607543945312	1	918.460095	917.452819	0.79491	0.00073009	0.0011873	1.0905E-06	0.79609	0.00073118	918.4600418660441	49.23	0.31638	48.914	48.763	49.079	-0.31596					11	5	3	0	0	0	0.014796	1	18537	18537		101.72	57.315	1	11839000			31155	3198	19612	19720	30002	30002					-0.00920969965443419
SMSGPLIGV	9	Unmodified	_SMSGPLIGV_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	HCT116MG_D190212_S2	2	860.4552001953125	1	860.454616	859.447339	0.73695	0.00063411	-0.058212	-5.0089E-05	0.67873	0.00058402	860.4547967453988	51.103	0.36176	50.924	50.758	51.12	-0.17868					13	6	3	0	0	0	0.088989	1	19592	19592		60.39	13.469	1	51639000			31156	3371	19613	19721	30003	30003					0.011993512427466158
SMSGPLIGV	9	Unmodified	_SMSGPLIGV_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	HCT116MG_D190212_S3	3	860.4548950195312	1	860.454616	859.447339	0.71665	0.00061664	-0.015558	-1.3387E-05	0.70109	0.00060326	860.454515940739	51.334	0.26247	51.022	50.857	51.12	-0.31166					7	4	2	0	0	0	0.088989	1	19390	19390		60.39	22.238	1	5162200			31157	3371	19613	19721	30004	30004					0.011993512427466158
SMSSKIIGI	9	Unmodified	_SMSSKIIGI_					0	0	0		TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant;ENSG00000120438|ENST00000321394|TCP1	TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant	TCP1|p.A232Gfs*7|1|0.05|ENSG00000120438|chr6:159784043-159784044|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	468.2649841308594	2	468.265153	934.515753	0.11856	5.5516E-05	0.06143	2.8766E-05	0.17999	8.4282E-05	468.2649984641717	44.005	0.25613	43.927	43.813	44.069	-0.078373					7	4	2	0	0	0	0.05892	1	16741	16741		70.332	29.883	1	11621000			31158	2696	19614	19722	30005	30005					0.045875958226019975
SMSYLGYFTA	10	Unmodified	_SMSYLGYFTA_					0	0	0			REV__nc|ENSG00000136305|Q9UHD4|CIDEB	REV__nc|ENSG00000136305|Q9UHD4|CIDEB	MULTI-MSMS	HCT116MG_D190212_S4	4	570.257568359375	2	570.257525	1138.5005	-0.039211	-2.236E-05	0.41621	0.00023734	0.37699	0.00021498	570.2576463234243	16.436	1.0993	16.272	15.563	16.663	-0.16365					50	21	3	0	0	0	0.65652	1	5404	5404		24.021	4.7636	1	5104300	+		31159	17139	19615	19723	30006	30006					-0.06321315765239888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MSMS	HCT116MG_D190212_S1	1	507.7684631347656	2	507.76806	1013.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.639	1	47.639	47.139	48.139	0								0	0	0	0.1044	1	18106	18106		54.774	22.468	1				31160	3831	19616	19724	30007	30007					0.01534694334247888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MSMS	HCT116MG_D190212_S2	2	507.7683410644531	2	507.76806	1013.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.699	1	47.566	47.066	48.066	-0.13281								0	0	0	0.0065761	1	18201	18201		112.59	68.735	1				31161	3831	19616	19724	30008	30008					0.01534694334247888
SMTPYSVMVSQ	11	Unmodified	_SMTPYSVMVSQ_					0	0	0			REV__nc|ENSG00000172995|Q9UBL0|ARPP21	REV__nc|ENSG00000172995|Q9UBL0|ARPP21	MSMS	HCT116MG_D190212_S4	4	615.2806396484375	2	615.280674	1228.5468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.227	1	22	21.5	22.5	-0.22777								0	0	0	0.9387	1	7720	7720		12.241	2.8575	1		+		31162	13410	19617	19725	30009	30009					-0.05833618925476003
SMYDKVLML	9	Unmodified	_SMYDKVLML_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF;GTF3C5|p.P170Hfs*35|1|0.33|ENSG00000148308|chr9:133043858-133043858|C/-|frameshift_variant	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	HCT116MG_D190212_S2	2	550.280029296875	2	550.279946	1098.54534	0.39313	0.00021633	-0.33381	-0.00018369	0.059327	3.2646E-05	550.2796871111045	54.824	0.20531	54.636	54.509	54.714	-0.18797					5	3	2	0	0	0	0.39921	1	21147	21147		22.658	6.8109	1	40216000			31163	4013	19618	19726	30010	30010					7.91776415098866E-06
SMYGVDLHHA	10	Unmodified	_SMYGVDLHHA_					0	0	0		nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;ENST00000578432.2_1_18:5429333-5433551:-|nuORF;ENST00000581757.1_1_18:5431369-5434107:-|nuORF;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;EPB41L3|p.L792Afs*6|1|0.52|ENSG00000082397|chr18:5398120-5398121|-/T|frameshift_variant;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000079819|O43491-4|EPB41L2;EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant	nc|ENSG00000079819|O43491-4|EPB41L2	MULTI-MSMS	HCT116MG_D190212_S1	1	565.2587890625	2	565.258391	1128.50223	0.54326	0.00030708	-0.10648	-6.0188E-05	0.43678	0.00024689	565.2585943019567	32.926	0.24255	32.926	32.794	33.037	0					6	4	2	0	0	0	0.37629	1	12188	12188		43.858	30.816	1	8773800			31164	1387;1496	19619	19727	30011	30011					-0.05688261956652241
SMYGVDLHHA	10	Unmodified	_SMYGVDLHHA_					0	0	0		nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;ENST00000578432.2_1_18:5429333-5433551:-|nuORF;ENST00000581757.1_1_18:5431369-5434107:-|nuORF;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;EPB41L3|p.L792Afs*6|1|0.52|ENSG00000082397|chr18:5398120-5398121|-/T|frameshift_variant;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1	nc|ENSG00000079819|O43491-4|EPB41L2;EPB41L1|p.Q464Nfs*19|1|0.16|ENSG00000088367|chr20:36194295-36194295|G/-|frameshift_variant	nc|ENSG00000079819|O43491-4|EPB41L2	MULTI-MSMS	HCT116MG_D190212_S2	2	565.259521484375	2	565.258391	1128.50223	0.71764	0.00040565	0.53119	0.00030026	1.2488	0.00070591	565.2586495837403	33.082	0.20834	32.871	32.739	32.948	-0.21135					5	3	2	0	0	0	0.20843	1	12292	12292		58.679	39.422	1	47106000			31165	1387;1496	19619	19727	30012	30012					-0.05688261956652241
SMYGVDLHKA	10	Unmodified	_SMYGVDLHKA_					0	0	0		nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-6|EPB41;EPB41|p.T582Qfs*11|1|0.24|ENSG00000159023|chr1:29053205-29053205|A/-|frameshift_variant;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-7|EPB41;nc|ENSG00000159023|P11171-5|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41	nc|ENSG00000159023|P11171-4|EPB41	nc|ENSG00000159023|P11171-4|EPB41	MSMS	HCT116MG_D190212_S1	1	560.7764892578125	2	560.776416	1119.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.471	1	32.471	31.971	32.971	0								0	0	0	0.49957	1	11983	11983		47.732	26.195	1				31166	9512	19620	19728	30013	30013					-0.01670804779791979
SMYGVDLHKA	10	Unmodified	_SMYGVDLHKA_					0	0	0		nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-6|EPB41;EPB41|p.T582Qfs*11|1|0.24|ENSG00000159023|chr1:29053205-29053205|A/-|frameshift_variant;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-7|EPB41;nc|ENSG00000159023|P11171-5|EPB41;EPB41|p.K805Rfs*3|1|0.19|ENSG00000159023|chr1:29109433-29109433|C/-|frameshift_variant;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41	nc|ENSG00000159023|P11171-4|EPB41	nc|ENSG00000159023|P11171-4|EPB41	MULTI-MSMS	HCT116MG_D190212_S2	2	560.7765502929688	2	560.776416	1119.53828	0.34006	0.00019069	-1.1665	-0.00065416	-0.82647	-0.00046347	560.7763815731718	32.607	0.41675	32.393	32.114	32.531	-0.21419					16	7	3	0	0	0	0.24695	1	12100	12100		55.235	32.498	1	35220000			31167	9512	19620	19728	30014	30014					-0.01670804779791979
SMYLGGAPAGP	11	Oxidation (M)	_SM(Oxidation (M))YLGGAPAGP_		SM(1)YLGGAPAGP		SM(46)YLGGAPAGP	0	0	1		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N2655Kfs*10|1|0.19|ENSG00000197653|chr12:123877852-123877853|-/A|frameshift_variant;DNAH10|p.Q2965Kfs*11|1|0.57|ENSG00000197653|chr12:123894687-123894687|C/-|frameshift_variant;DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant;DNAH10|p.N3499Ifs*2|1|0.14|ENSG00000197653|chr12:123916578-123916578|A/-|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MSMS	HCT116MG_D190212_S3	3	518.7440185546875	2	518.742042	1035.46953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.257	1	20.305	19.805	20.805	0.048107								0	0	0	0.53376	1	6995	6995		46.021	7.8454	1				31168	6164	19621	19729	30015	30015		132			-0.04678469079499337
SNADDDSH	8	Unmodified	_SNADDDSH_					0	0	0			REV__nc|ENSG00000163539|O75122|CLASP2	REV__nc|ENSG00000163539|O75122|CLASP2	MSMS	HCT116MG_D190212_S4	4	430.6531982421875	2	430.654478	859.294404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.384	1	12.215	11.715	12.715	-0.16903								0	0	0	0.8837	1	3843	3843		0	0	1		+		31169	10199	19622	19730	30016	30016					-0.14087172620190813
SNALKRKT	8	Unmodified	_SNALKRKT_					0	0	0		nc|ENSG00000170615|P58743-2|SLC26A5;SLC26A5|p.F693Lfs*19|1|0.36|ENSG00000170615|chr7:103374555-103374555|A/-|frameshift_variant;nc|ENSG00000170615|P58743-5|SLC26A5;nc|ENSG00000170615|P58743-6|SLC26A5;ENSG00000170615|ENST00000306312|SLC26A5;SLC26A5|p.I619Nfs*9|2|0.3|ENSG00000170615|chr7:103377731-103377732|-/G|frameshift_variant	nc|ENSG00000170615|P58743-2|SLC26A5	nc|ENSG00000170615|P58743-2|SLC26A5	MSMS	HCT116MG_D190212_S3	3	459.2802429199219	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.555	1	40.254	39.754	40.754	-0.30161								0	0	0	0.8837	1	15059	15059		5.2307	0	1				31170	5146	19623	19731	30017	30017					0.08380295882943756
SNDDDNDE	8	Unmodified	_SNDDDNDE_					0	0	0			REV__STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	REV__STRIP1|p.E384D|1|0.05|ENSG00000143093|chr1:110043722-110043722|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	462.1466369628906	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5506	1	2.5506	2.0506	3.0506	0								0	0	0	0.8837	1	761	761		0.6015	0	1		+		31171	17601	19624	19732	30018	30018					-0.18543503927901384
SNDDKNAWF	9	Unmodified	_SNDDKNAWF_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	HCT116MG_D190212_S2	2	548.7380981445312	2	548.738345	1095.46214	0.44187	0.00024247	-0.42894	-0.00023538	0.012926	7.0932E-06	548.738055091552	45.31	0.31067	45.217	45.049	45.359	-0.092472					9	5	3	0	0	0	0.043159	1	17245	17245		78.06	34.202	1	16380000			31172	1575	19625	19733	30019	30019					-0.08177485355577119
SNDFKFGPI	9	Unmodified	_SNDFKFGPI_					0	0	0			REV__LOXL2|p.L172W|1|0.28|ENSG00000134013|chr8:23360106-23360106|A/C|missense_variant	REV__LOXL2|p.L172W|1|0.28|ENSG00000134013|chr8:23360106-23360106|A/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	512.3554077148438	2	512.758549	1023.50255	0.50488	0.00025888	0.20762	0.00010646	0.7125	0.00036534	512.7586588662521	44.699	0.2095	44.614	44.482	44.691	-0.084797					6	3	2	0	0	0	0.23301	1	16983	16983		15.847	1.2655	1	10954000	+		31173	12045	19626	19734	30020	30020					-0.008265189651297078
SNDLFSVRW	9	Unmodified	_SNDLFSVRW_					0	0	0			REV__ENST00000527516.5_3_11:8832877-8892921:-|nuORF	REV__ENST00000527516.5_3_11:8832877-8892921:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	562.3436279296875	2	562.28018	1122.54581	0.44761	0.00025168	-0.70913	-0.00039873	-0.26153	-0.00014705	562.2796808854247	46.403	0.20642	46.291	46.162	46.369	-0.11121					5	3	2	0	0	0	0.19273	1	17663	17663		22.736	1.1993	1	6104800	+		31174	16266	19627	19735	30021	30021					-0.010563291878725067
SNDNQAKRNLH	11	Unmodified	_SNDNQAKRNLH_					0	0	0			REV__MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	REV__MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	432.88519287109375	3	432.884963	1295.63306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.4846	1	3.4846	2.9846	3.9846	0								0	0	0	0.9619	1	1042	1042		0.094841	0	1		+		31175	11454	19628	19736	30022	30022					-0.0029315498422874953
SNDQLTLEA	9	Unmodified	_SNDQLTLEA_					0	0	0			REV__ENST00000479043.1_1_3:15718479-15719091:-|nuORF	REV__ENST00000479043.1_1_3:15718479-15719091:-|nuORF	MSMS	HCT116MG_D190212_S3	3	495.7409362792969	2	495.740554	989.466554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.173	1	29.923	29.423	30.423	-0.24946								0	0	0	0.67173	1	10987	10987		20.454	0	1		+		31176	14247	19629	19737	30023	30023					-0.028600209326668846
SNELQACTY	9	Carbamidomethyl (C)	_SNELQAC(Carbamidomethyl (C))TY_	SNELQAC(1)TY		SNELQAC(48)TY		0	1	0			REV__UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant	REV__UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1085.4576416015625	1	1085.4568	1084.44952	0.55362	0.00060093	0.057623	6.2547E-05	0.61124	0.00066348	1085.4570857486924	51.684	0.20507	51.501	51.373	51.578	-0.18369					6	3	2	0	0	0	0.14972	1	19842	19842		48.346	12.219	1	22542000	+		31177	11215	19630	19738	30024	30024	48				-0.08932264810141533
SNFFGGAP	8	Unmodified	_SNFFGGAP_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	HCT116MG_D190212_S2	2	398.68475341796875	2	398.684853	795.355153	0.21088	8.4074E-05	0.025165	1.0033E-05	0.23604	9.4106E-05	398.6847705458437	24.021	0.20697	23.637	23.56	23.767	-0.38324					5	3	2	0	0	0	0.84759	1	8627	8627		5.7604	0	1	6648100	+		31178	14227	19631	19739	30025	30025					-0.050709907792793274
SNFIIGAFILL	11	Unmodified	_SNFIIGAFILL_					0	0	0			REV__tr|U7T3M1|U7T3M1_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00350PE=4SV=1	REV__tr|U7T3M1|U7T3M1_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00350PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	604.3582763671875	2	604.357899	1206.70125	0.38736	0.0002341	-0.37484	-0.00022654	0.012512	7.5618E-06	604.3572985105072	61.513	2.1201	61.513	60.749	62.869	0					100	40	3	0	0	0	0.74191	1	23899	23899		4.897	3.2444	1	16469000	+		31179	17953	19632	19740	30026	30026					0.10616321613701984
SNFIIGAFILL	11	Unmodified	_SNFIIGAFILL_					0	0	0			REV__tr|U7T3M1|U7T3M1_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00350PE=4SV=1	REV__tr|U7T3M1|U7T3M1_FUSNUEamAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00350PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	604.3577270507812	2	604.357899	1206.70125	0.77086	0.00046587	-0.46457	-0.00028077	0.30628	0.0001851	604.357294267678	61.387	1.6466	61.245	60.739	62.385	-0.14227					78	31	3	0	0	0	0.74191	2	23739	23697;23739		4.897	1.3005	1	7959900	+		31180	17953	19632	19740	30027;30028	30028					0.10616321613701984
SNFLPKHIW	9	Unmodified	_SNFLPKHIW_					0	0	0		nc|ENSG00000273540|Q96MI9|AGBL1	nc|ENSG00000273540|Q96MI9|AGBL1	nc|ENSG00000273540|Q96MI9|AGBL1	MSMS	HCT116MG_D190212_S4	4	381.20953369140625	3	381.209948	1140.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.732	1	15.57	15.07	16.07	-0.16173								0	0	0	0.76973	1	5095	5095		0.96228	0	1				31181	9662	19633	19741	30029	30029					0.04333441951121131
SNNGYCCL	8	Unmodified	_SNNGYCCL_					0	0	0			REV__ENSG00000205667|ENST00000381130|ARSH	REV__ENSG00000205667|ENST00000381130|ARSH	MSMS	HCT116MG_D190212_S4	4	437.16448974609375	2	437.165113	872.315673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.782	1	13.619	13.119	14.119	-0.16233								0	0	0	0.8837	1	4336	4336		0.79363	0	1		+		31182	14229	19634	19742	30030	30030					-0.12559202116676715
SNNLDSSPRSR	11	Unmodified	_SNNLDSSPRSR_					0	0	0			REV__nc|ENSG00000116141|Q9P0L2-2|MARK1	REV__nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-MSMS	HCT116MG_D190212_S1	1	616.892822265625	2	616.80254	1231.59053	0.51847	0.00031979	0.074719	4.6087E-05	0.59319	0.00036588	616.8027039258434	23.758	0.20938	23.758	23.627	23.837	0					5	3	2	0	0	0	0.70332	1	8493	8493		20.581	1.219	1	8315300	+		31183	11575	19635	19743	30031	30031					-0.016005501124709554
SNNLDSSPRSR	11	Unmodified	_SNNLDSSPRSR_					0	0	0			REV__nc|ENSG00000116141|Q9P0L2-2|MARK1	REV__nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-SECPEP	HCT116MG_D190212_S1	1	616.892822265625	2	616.80254	1231.59053	0.51847	0.00031979	0.074719	4.6087E-05	0.59319	0.00036588	616.8027039258434	23.758	0.20938	23.758	23.627	23.837	0					5	3	2	0	0	0	0.35465	1	8493	8493		20.581	1.219	1	8315300	+		31184	11575	19635	19743	30032	30032					-0.016005501124709554
SNVDSRYEV	9	Unmodified	_SNVDSRYEV_					0	0	0			REV__ENSG00000163624|ENST00000295887|CDS1	REV__ENSG00000163624|ENST00000295887|CDS1	MULTI-MSMS	HCT116MG_D190212_S4	4	534.7510986328125	2	534.751453	1067.48835	0.28332	0.00015151	-0.30638	-0.00016384	-0.023055	-1.2329E-05	534.7512876599568	18.012	1.3489	17.837	17.428	18.777	-0.17501					43	25	2	0	0	0	0.43843	1	6187	6187		20.415	3.3016	1	4127100	+		31185	12936	19636	19744	30033	30033					-0.042692161840932386
SNVGWHGGWP	10	Unmodified	_SNVGWHGGWP_					0	0	0			REV__ENST00000480825.6_1_1:36941571-36941724:-|nuORF	REV__ENST00000480825.6_1_1:36941571-36941724:-|nuORF	MSMS	HCT116MG_D190212_S3	3	366.1698303222656	3	366.170152	1095.48863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.526	1	58.257	57.757	58.757	-0.26932								0	0	0	0.95507	1	22266	22266		1.7423	0.78	1		+		31186	15950	19637	19745	30034	30034					-0.05529751673566352
SNVSWRYEEQ	10	Unmodified	_SNVSWRYEEQ_					0	0	0		nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5;ADGRF5|p.Q619Tfs*21|1|0.29|ENSG00000069122|chr6:46865177-46865178|-/T|frameshift_variant;ADGRF5|p.Q821Afs*22|1|0.06|ENSG00000069122|chr6:46859442-46859443|-/GGGC|frameshift_variant	nc|ENSG00000069122|Q8IZF2-2|ADGRF5	nc|ENSG00000069122|Q8IZF2-2|ADGRF5	MSMS	HCT116MG_D190212_S3	3	649.294189453125	2	649.294016	1296.57348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.693	1	25.565	25.065	26.065	-0.12795								0	0	0	0.93202	1	9185	9185		8.7454	0	1				31187	1213	19638	19746	30035	30035					-0.06294470718262346
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	HCT116MG_D190212_S1	1	535.2376098632812	2	534.735271	1067.45599	0.26568	0.00014207	0.24492	0.00013097	0.51059	0.00027303	534.7350377746114	41.035	0.39149	41.035	40.794	41.185	0					15	7	3	0	0	0	0.32978	1	15452	15452		27.629	3.6082	1	19095000			31188	5935	19639	19747	30036	30036					-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	HCT116MG_D190212_S3	3	534.7354125976562	2	534.735271	1067.45599	0.41948	0.00022431	-0.089689	-4.796E-05	0.32979	0.00017635	534.735108608707	41.277	0.6051	40.975	40.58	41.185	-0.30185					38	12	4	0	0	0	0.26536	1	15277	15277		34.402	3.7652	1	148380000			31189	5935	19639	19747	30037	30037					-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	HCT116MG_D190212_S3	3	1068.4638671875	1	1068.46327	1067.45599	0.48729	0.00052065	0.17556	0.00018758	0.66285	0.00070823	1068.463124466847	41.325	0.52972	41.023	40.632	41.161	-0.30185					21	10	3	0	0	0	0.14171	1	15312	15312		49.933	11.959	1	44655000			31190	5935	19639	19747	30038	30038					-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	HCT116MG_D190212_S4	4	534.7353515625	2	534.735271	1067.45599	0.4597	0.00024582	-0.4139	-0.00022133	0.045796	2.4489E-05	534.734649992292	41.413	0.54707	41.036	40.676	41.223	-0.37732					71	39	2	0	0	0	0.26536	1	15168	15168		34.402	3.7652	1	59598000			31191	5935	19639	19747	30039	30039					-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1068.46327	1067.45599	0.62255	0.00066518	-0.22635	-0.00024184	0.39621	0.00042333	1068.4628686283781	41.055	0.18721	41.055	40.946	41.133	0	0.026747	-0.00038919	NaN	49.933	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8917000			31192	5935	19639	19747							-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	534.735271	1067.45599	0.26568	0.00014207	0.24492	0.00013097	0.51059	0.00027303	534.7350377746114	41.035	0.39149	41.035	40.794	41.185	0	0.021995	0.00030454	NaN	34.402	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19095000			31193	5935	19639	19747							-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1068.46327	1067.45599	0.4463	0.00047685	0.13808	0.00014754	0.58438	0.00062439	1068.4633387129975	41.074	0.56728	41.006	40.675	41.242	-0.068333	-0.021774	1.858E-07	NaN	49.933	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128550000			31194	5935	19639	19747							-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	534.735271	1067.45599	0.39617	0.00021184	0.22053	0.00011792	0.61669	0.00032977	534.7353149380482	41.074	0.56728	41.005	40.675	41.242	-0.068359	-0.0074006	0.00027845	NaN	34.402	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246400000			31195	5935	19639	19747							-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1068.46327	1067.45599	0.48729	0.00052065	0.17556	0.00018758	0.66285	0.00070823	1068.463124466847	41.325	0.52972	41.023	40.632	41.161	-0.30185	-0.0049727	4.0228E-05	NaN	49.933	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44655000			31196	5935	19639	19747							-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	534.735271	1067.45599	0.41948	0.00022431	-0.089689	-4.796E-05	0.32979	0.00017635	534.735108608707	41.277	0.6051	40.975	40.58	41.185	-0.30185	-0.037753	-5.3312E-05	NaN	34.402	38	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148380000			31197	5935	19639	19747							-0.07504003587109764
SNWYTAETP	9	Unmodified	_SNWYTAETP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	534.735271	1067.45599	0.4597	0.00024582	-0.4139	-0.00022133	0.045796	2.4489E-05	534.734649992292	41.413	0.54707	41.036	40.676	41.223	-0.37732	0.023158	-0.00040005	NaN	34.402	71	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59598000			31198	5935	19639	19747							-0.07504003587109764
SPAEGFSSRYE	11	Unmodified	_SPAEGFSSRYE_					0	0	0		ENST00000486465.5_1_3:9512364-9516346:+|nuORF;ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;SETD5|p.K1129Nfs*15|1|0.41|ENSG00000168137|chr3:9473422-9473422|A/-|frameshift_variant;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;SETD5|p.T1366Kfs*4|1|0.35|ENSG00000168137|chr3:9475859-9475859|C/-|frameshift_variant;ENSG00000168137|ENST00000402198|SETD5	ENST00000486465.5_1_3:9512364-9516346:+|nuORF	ENST00000486465.5_1_3:9512364-9516346:+|nuORF	MSMS	HCT116MG_D190212_S4	4	614.79345703125	2	615.275292	1228.53603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.572	1	16.405	15.905	16.905	-0.16664								0	0	0	0.94851	1	5434	5434		7.1017	0.89594	1				31199	4987	19640	19748	30040	30040					-0.06909561983911772
SPAGPPSGPGP	11	Unmodified	_SPAGPPSGPGP_					0	0	0			REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	460.7274475097656	2	460.727249	919.439946	0.16389	7.5507E-05	0.36037	0.00016603	0.52426	0.00024154	460.7273836053163	19.513	0.5204	19.144	18.836	19.356	-0.3695					12	9	2	0	0	0	0.67041	1	6820	6820		27.629	7.1752	1	6652800	+		31200	16663	19641	19749	30041	30041					-0.022996650333311663
SPAGPPSGPGP	11	Unmodified	_SPAGPPSGPGP_					0	0	0			REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	460.727249	919.439946	0.16389	7.5507E-05	0.36037	0.00016603	0.52426	0.00024154	460.7273836053163	19.513	0.5204	19.144	18.836	19.356	-0.3695	-0.023831	4.5164E-05	NaN	27.629	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6652800	+		31201	16663	19641	19749							-0.022996650333311663
SPAGPPSGPGP	11	Unmodified	_SPAGPPSGPGP_					0	0	0			REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	460.727249	919.439946	0.06252	2.8805E-05	0.20981	9.6667E-05	0.27233	0.00012547	460.7272335504414	19.378	0.72785	19.191	18.713	19.441	-0.18674	0.023831	-9.3566E-05	NaN	27.629	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8526200	+		31202	16663	19641	19749							-0.022996650333311663
SPAKAPNNKE	10	Unmodified	_SPAKAPNNKE_					0	0	0			REV__ENST00000343483.6_1_7:27203265-27204613:-|nuORF	REV__ENST00000343483.6_1_7:27203265-27204613:-|nuORF	MSMS	HCT116MG_D190212_S3	3	352.52056884765625	3	352.520851	1054.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.52	1	21.538	21.038	22.038	0.018446								0	0	0	0.91667	1	7503	7503		12.175	1.8595	1		+		31203	14996	19642	19750	30042	30042					0.015633669495173308
SPAPATSWS	9	Unmodified	_SPAPATSWS_					0	0	0		ENST00000562067.5_1_15:75648526-75649181:-|nuORF;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1	ENST00000562067.5_1_15:75648526-75649181:-|nuORF	ENST00000562067.5_1_15:75648526-75649181:-|nuORF	MSMS	HCT116MG_D190212_S4	4	452.21221923828125	2	452.213975	902.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.896	1	22.658	22.158	23.158	-0.23758								0	0	0	0.74436	1	7989	7989		16.942	0	1				31204	3662	19643	19751	30043	30043					-0.04171353924664345
SPASPQGPPQ	10	Unmodified	_SPASPQGPPQ_					0	0	0			REV__ENST00000570320.5_1_16:24931453-24947070:-|nuORF	REV__ENST00000570320.5_1_16:24931453-24947070:-|nuORF	MSMS	HCT116MG_D190212_S4	4	483.2378234863281	2	483.237981	964.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.574	1	19.38	18.88	19.88	-0.19367								0	0	0	0.68912	1	6647	6647		38.176	3.7738	1		+		31205	12309	19644	19752	30044	30044					-0.022242800046115008
SPCCCMCA	8	Unmodified	_SPCCCMCA_					0	0	0		ENST00000487159.5_2_3:42266898-42266988:+|nuORF	ENST00000487159.5_2_3:42266898-42266988:+|nuORF	ENST00000487159.5_2_3:42266898-42266988:+|nuORF	MSMS	HCT116MG_D190212_S4	4	409.5979919433594	2	409.112123	816.209693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.531	1	15.369	14.869	15.869	-0.16173								0	0	0	0.8837	1	5014	5014		0.69038	0	1				31206	8301	19645	19753	30045	30045					-0.2057632054966234
SPDEVQAARY	10	Unmodified	_SPDEVQAARY_					0	0	0		DLGAP1|p.A173V|1|0.36|ENSG00000170579|chr18:3879551-3879551|G/A|missense_variant	DLGAP1|p.A173V|1|0.36|ENSG00000170579|chr18:3879551-3879551|G/A|missense_variant	DLGAP1|p.A173V|1|0.36|ENSG00000170579|chr18:3879551-3879551|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	568.2728271484375	2	568.272552	1134.53055	0.65962	0.00037485	-0.0098786	-5.6137E-06	0.64975	0.00036923	568.2725539758825	32.767	0.26042	32.482	32.3	32.56	-0.28511					11	4	3	0	0	0	0.23641	1	12026	12026		56.177	3.9087	1	8549600			31207	685	19646	19754	30046	30046					-0.031332407757190595
SPDSQKPKEA	10	Unmodified	_SPDSQKPKEA_					0	0	0			REV__ENSG00000091656|ENST00000651372|ZFHX4	REV__ENSG00000091656|ENST00000651372|ZFHX4	MULTI-MSMS	HCT116MG_D190212_S4	4	543.7753295898438	2	543.774928	1085.5353	-0.13592	-7.3911E-05	0.46462	0.00025265	0.3287	0.00017874	543.7751635513123	16.444	0.23219	16.28	16.122	16.354	-0.16364					7	4	2	0	0	0	0.72406	1	5386	5386		18.373	0.22675	1	1225500	+		31208	11003	19647	19755	30047	30047					-0.004043566329301029
SPDTVKKH	8	Unmodified	_SPDTVKKH_					0	0	0			REV__nc|ENSG00000198408|O60502-2|OGA	REV__nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	HCT116MG_D190212_S1	1	456.7485046386719	2	456.250892	910.48723	0.19664	8.9718E-05	-2.7833	-0.0012699	-2.5866	-0.0011801	456.2520296325332	31.55	0.41638	31.55	31.284	31.7	0					13	7	3	0	0	0	0.66231	1	11650	11650		26.884	0	1	6020000	+		31209	14123	19648	19756	30048	30048					0.028406142376638854
SPELQAEAK	9	Unmodified	_SPELQAEAK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S1	1	486.7536315917969	2	486.753464	971.492375	0.26698	0.00012995	0.031659	1.541E-05	0.29863	0.00014536	486.7534048176897	21.517	0.36539	21.517	21.333	21.698	0					16	6	4	0	0	0	0.0035707	1	7574	7574		174.48	56.721	1	28817000			31210	4390	19649	19757	30049	30049					0.00548873309605824
SPELQAEAK	9	Unmodified	_SPELQAEAK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S2	2	486.75372314453125	2	486.753464	971.492375	0.11728	5.7086E-05	0.32959	0.00016043	0.44687	0.00021751	486.75350030523896	21.96	0.36491	21.575	21.427	21.792	-0.38503					8	6	2	0	0	0	0.0056012	1	7759	7759		132.38	25.28	1	25157000			31211	4390	19649	19757	30050	30050					0.00548873309605824
SPELQAEAK	9	Unmodified	_SPELQAEAK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S3	3	486.7538146972656	2	486.753464	971.492375	0.080307	3.909E-05	0.37255	0.00018134	0.45286	0.00022043	486.75353049089097	21.385	0.47573	21.403	21.219	21.694	0.018446					23	8	4	0	0	0	0.0019891	1	7435	7435		187.14	58.21	1	46984000			31212	4390	19649	19757	30051	30051					0.00548873309605824
SPELQAEAK	9	Unmodified	_SPELQAEAK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S3	3	972.5000610351562	1	972.499652	971.492375	0.448	0.00043568	-0.2194	-0.00021337	0.2286	0.00022231	972.4994156332903	21.377	0.21183	21.396	21.271	21.483	0.018446					5	3	2	0	0	0	0.0019891	1	7479	7479		187.14	58.21	1	2541100			31213	4390	19649	19757	30052	30052					0.00548873309605824
SPELQAEAK	9	Unmodified	_SPELQAEAK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S4	4	486.7536315917969	2	486.753464	971.492375	-0.059059	-2.8747E-05	0.38878	0.00018924	0.32972	0.00016049	486.75354434414135	21.666	0.57106	21.448	21.218	21.789	-0.21832					21	10	3	0	0	0	0.0019891	1	7475	7475		187.14	69.382	1	37636000			31214	4390	19649	19757	30053	30053					0.00548873309605824
SPELQAEAK	9	Unmodified	_SPELQAEAK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S4	4	972.4999389648438	1	972.499652	971.492375	0.60245	0.00058588	-0.37092	-0.00036072	0.23153	0.00022516	972.499160028525	21.67	0.25925	21.452	21.27	21.529	-0.21832					6	4	2	0	0	0	0.0034538	1	7521	7521		162.31	55.215	1	1983400			31215	4390	19649	19757	30054	30054					0.00548873309605824
SPFPAPGK	8	Unmodified	_SPFPAPGK_					0	0	0		ENST00000532871.3_1_11:8720844-8728796:-|nuORF;ENST00000526701.5_1_11:8724978-8732445:-|nuORF;nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B	ENST00000532871.3_1_11:8720844-8728796:-|nuORF	ENST00000532871.3_1_11:8720844-8728796:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	800.431396484375	1	800.430116	799.422839	1.0044	0.00080398	0.079352	6.3516E-05	1.0838	0.0008675	800.4303814433	35.753	0.20584	35.454	35.369	35.575	-0.29922					8	5	2	0	0	0	0.82475	1	13198	13198		8.5933	8.5933	1	8337200			31216	4855	19650	19758	30055	30055					0.01510459151518262
SPFVKTISGP	10	Unmodified	_SPFVKTISGP_					0	0	0			REV__ENSG00000136929|ENST00000616898|HEMGN	REV__ENSG00000136929|ENST00000616898|HEMGN	MULTI-MSMS	HCT116MG_D190212_S4	4	517.2916259765625	2	516.78985	1031.56515	0.2171	0.0001122	0.19406	0.00010029	0.41116	0.00021248	516.7898609435711	30.901	0.56709	30.537	30.307	30.874	-0.36416					34	11	5	0	0	0	0.76634	1	11117	11117		14.838	0.93222	1	196570000	+		31217	12152	19651	19759	30056	30056					0.05062627103075101
SPGAQRGAP	9	Unmodified	_SPGAQRGAP_					0	0	0			REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF	REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF	MSMS	HCT116MG_D190212_S4	4	420.7182312011719	2	420.719759	839.424964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.21	1	23.951	23.451	24.451	-0.25816								0	0	0	0.76781	1	8518	8518		8.5933	1.8701	1		+		31218	15683	19652	19760	30057	30057					-0.0011711211066085525
SPGEDRLF	8	Unmodified	_SPGEDRLF_					0	0	0		nc|ENSG00000124019|Q9H5Z6-2|FAM124B;FAM124B|p.K315Lfs*29|1|0.07|ENSG00000124019|chr2:224379992-224379998|GGCTTTT/-|frameshift_variant;ENSG00000124019|ENST00000409685|FAM124B	nc|ENSG00000124019|Q9H5Z6-2|FAM124B	nc|ENSG00000124019|Q9H5Z6-2|FAM124B	MULTI-MSMS	HCT116MG_D190212_S4	4	460.7272033691406	2	460.727249	919.439946	0.013729	6.3252E-06	0.34987	0.0001612	0.3636	0.00016752	460.72727470844546	18.701	0.6239	18.521	18.147	18.771	-0.18052					19	11	2	0	0	0	0.79062	1	6276	6276		12.532	0.89125	1	3648600			31219	2824	19653	19761	30058	30058					-0.022996650333197977
SPGEDRLF	8	Unmodified	_SPGEDRLF_					0	0	0		nc|ENSG00000124019|Q9H5Z6-2|FAM124B;FAM124B|p.K315Lfs*29|1|0.07|ENSG00000124019|chr2:224379992-224379998|GGCTTTT/-|frameshift_variant;ENSG00000124019|ENST00000409685|FAM124B	nc|ENSG00000124019|Q9H5Z6-2|FAM124B	nc|ENSG00000124019|Q9H5Z6-2|FAM124B	MULTI-MSMS	HCT116MG_D190212_S4	4	460.7276916503906	2	460.727249	919.439946	0.06252	2.8805E-05	0.20981	9.6667E-05	0.27233	0.00012547	460.7272335504414	19.378	0.72785	19.191	18.713	19.441	-0.18674					23	13	2	0	0	0	0.67912	1	6597	6597		25.399	2.2509	1	8526200			31220	2824	19653	19761	30059	30059					-0.022996650333197977
SPGEKGQFA	9	Unmodified	_SPGEKGQFA_					0	0	0		ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.N962S|1|0.4|ENSG00000167632|chr8:139910226-139910226|T/C|missense_variant;ENST00000521667.5_1_8:140743306-141301208:-|nuORF;nc|ENSG00000167632|Q96Q05-3|TRAPPC9	ENSG00000167632|ENST00000438773|TRAPPC9	ENSG00000167632|ENST00000438773|TRAPPC9	MULTI-MSMS	HCT116MG_D190212_S3	3	460.7265625	2	460.727249	919.439946	0.41575	0.00019155	-0.24291	-0.00011191	0.17285	7.9634E-05	460.72703637270445	18.519	0.5209	18.596	18.309	18.83	0.076334					16	9	2	0	0	0	0.49914	1	6289	6289		16.942	2.3606	1	4761100			31221	4940	19654	19762	30060	30060					-0.022996650333311663
SPGEKGQFA	9	Unmodified	_SPGEKGQFA_					0	0	0		ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.N962S|1|0.4|ENSG00000167632|chr8:139910226-139910226|T/C|missense_variant;ENST00000521667.5_1_8:140743306-141301208:-|nuORF;nc|ENSG00000167632|Q96Q05-3|TRAPPC9	ENSG00000167632|ENST00000438773|TRAPPC9	ENSG00000167632|ENST00000438773|TRAPPC9	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	460.727249	919.439946	0.013729	6.3252E-06	0.34987	0.0001612	0.3636	0.00016752	460.72727470844546	18.701	0.6239	18.521	18.147	18.771	-0.18052	-0.037426	0.00015199	NaN	16.942	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3648600			31222	4940	19654	19762							-0.022996650333311663
SPGEPSSTAS	10	Unmodified	_SPGEPSSTAS_					0	0	0			REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	HCT116MG_D190212_S2	2	919.4373779296875	1	919.400332	918.393055	0.69219	0.0006364	-0.62596	-0.0005755	0.066235	6.0897E-05	919.4004991713803	20.038	0.36263	19.663	19.455	19.817	-0.37503					9	6	2	0	0	0	0.26351	1	6953	6953		17.113	5.4726	1	6991600	+		31223	10866	19655	19763	30061	30061					-0.06940569375137784
SPGGLLAW	8	Unmodified	_SPGGLLAW_					0	0	0			REV__ENST00000308595.9_1_11:67052957-67053431:+|nuORF	REV__ENST00000308595.9_1_11:67052957-67053431:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	400.7184753417969	2	400.718696	799.422839	-0.063489	-2.5441E-05	-0.090694	-3.6343E-05	-0.15418	-6.1784E-05	400.7185875808739	35.588	0.30852	35.446	35.283	35.592	-0.14245					12	5	3	0	0	0	0.85329	1	13289	13289		4.756	2.1785	1	66607000	+		31224	14822	19656	19764	30062	30062					0.015104591515068932
SPGGLLAW	8	Unmodified	_SPGGLLAW_					0	0	0			REV__ENST00000308595.9_1_11:67052957-67053431:+|nuORF	REV__ENST00000308595.9_1_11:67052957-67053431:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	400.718696	799.422839	-0.063489	-2.5441E-05	-0.090694	-3.6343E-05	-0.15418	-6.1784E-05	400.7185875808739	35.588	0.30852	35.446	35.283	35.592	-0.14245	-0.0044988	1.4319E-05	NaN	4.756	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66607000	+		31225	14822	19656	19764							0.015104591515068932
SPGGLSLGNVT	11	Unmodified	_SPGGLSLGNVT_					0	0	0		nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D	nc|ENSG00000116604|Q14814-6|MEF2D	nc|ENSG00000116604|Q14814-6|MEF2D	MSMS	HCT116MG_D190212_S3	3	501.2667236328125	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.201	1	21.219	20.719	21.719	0.018446								0	0	0	0.90489	1	7376	7376		19.362	5.4559	1				31226	2521	19657	19765	30063	30063					0.01868562200957058
SPGPGGQL	8	Unmodified	_SPGPGGQL_					0	0	0		ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;ADGRV1|p.Y1610Tfs*36|1|0.42|ENSG00000164199|chr5:90672616-90672616|T/-|frameshift_variant;ADGRV1|p.A1698Nfs*28|1|0.13|ENSG00000164199|chr5:90674214-90674215|-/GAACATATATATTC|frameshift_variant;ADGRV1|p.S1982Ffs*2|1|0.3|ENSG00000164199|chr5:90683859-90683860|-/T|frameshift_variant;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ADGRV1|p.S2670Rfs*9|1|0.05|ENSG00000164199|chr5:90697000-90697001|-/GCCCAAAATAATT|frameshift_variant	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	712.362548828125	1	712.36243	711.355153	1.0591	0.00075447	-0.4263	-0.00030368	0.6328	0.00045079	712.3620709157542	24.906	0.25916	24.531	24.4	24.66	-0.37521					9	4	3	0	0	0	0.41924	1	8954	8954		48.346	7.8973	1	39939000			31227	62	19658	19766	30064	30064					-0.012069907792920276
SPGPGPSPAAP	11	Unmodified	_SPGPGPSPAAP_					0	0	0		ENST00000401813.7_1_1:2130502-2130631:-|nuORF	ENST00000401813.7_1_1:2130502-2130631:-|nuORF	ENST00000401813.7_1_1:2130502-2130631:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	468.2818298339844	2	467.735074	933.455596	0.23531	0.00011006	-0.62355	-0.00029166	-0.38823	-0.00018159	467.73473997658317	24.67	0.88466	24.587	23.925	24.809	-0.083694					21	16	2	0	0	0	0.3506	1	8589	8589		4.5289	0	1	3859800			31228	7696	19659	19767	30065	30065					-0.01379378516298857
SPGPPGEVGQP	11	Unmodified	_SPGPPGEVGQP_					0	0	0			REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	REV__COL4A5|p.M1519Ifs*7|1|0.04|ENSG00000188153|chrX:108692793-108692794|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	511.2511291503906	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.367	1	25.261	24.761	25.761	-0.10618								0	0	0	0.90489	1	9053	9053		19.362	1.2156	1		+		31229	10240	19660	19768	30066	30066					-0.021800108331376578
SPGPPPRPCRW	11	Unmodified	_SPGPPPRPCRW_					0	0	0		ENST00000491520.5_1_22:19467485-19467677:+|nuORF	ENST00000491520.5_1_22:19467485-19467677:+|nuORF	ENST00000491520.5_1_22:19467485-19467677:+|nuORF	MSMS	HCT116MG_D190212_S4	4	625.31689453125	2	625.316574	1248.6186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.144	1	20.934	20.434	21.434	-0.20959								0	0	0	0.93717	1	7282	7282		13.042	0	1				31230	8345	19661	19769	30067	30067					0.004231013338994671
SPGRYSRSDP	10	Unmodified	_SPGRYSRSDP_					0	0	0		ENST00000483069.5_1_3:53003220-53080646:-|nuORF	ENST00000483069.5_1_3:53003220-53080646:-|nuORF	ENST00000483069.5_1_3:53003220-53080646:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	561.28759765625	2	561.270344	1120.52613	0.4011	0.00022512	0.38473	0.00021594	0.78583	0.00044106	561.7722204971147	22.098	0.52086	21.713	21.323	21.844	-0.38503					11	9	2	0	0	0	0.75066	1	7744	7744		16.149	1.3108	1	7196900			31231	8268	19662	19770	30068	30068					-0.029307051986279475
SPGSSPTVRWW	11	Unmodified	_SPGSSPTVRWW_					0	0	0		ENST00000493232.5_1_7:2580597-2580762:-|nuORF;ENST00000467558.5_1_7:2580597-2582974:-|nuORF;ENST00000469750.5_1_7:2580597-2582612:-|nuORF	ENST00000493232.5_1_7:2580597-2580762:-|nuORF	ENST00000493232.5_1_7:2580597-2580762:-|nuORF	MSMS	HCT116MG_D190212_S4	4	630.3089599609375	2	630.312012	1258.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.795	1	28.454	27.954	28.954	-0.34059								0	0	0	0.8787	1	10370	10370		22.736	7.898	1				31232	8118	19663	19771	30069	30069					-0.009489687507539202
SPHPLSLS	8	Unmodified	_SPHPLSLS_					0	0	0			REV__ENST00000511884.6_2_4:31144591-31144774:+|nuORF	REV__ENST00000511884.6_2_4:31144591-31144774:+|nuORF	MSMS	HCT116MG_D190212_S4	4	419.22772216796875	2	419.226885	836.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.136	1	58.858	58.358	59.358	-0.27731								0	0	0	0.8837	1	22246	22246		5.2307	0	1		+		31233	16187	19664	19772	30070	30070					0.014455403176157233
SPIRYSILPHS	11	Unmodified	_SPIRYSILPHS_					0	0	0		CDH24|p.L437Pfs*35|1|0.36|ENSG00000139880|chr14:23052526-23052527|-/G|frameshift_variant;ENSG00000139880|ENST00000487137|CDH24;nc|ENSG00000139880|Q86UP0|CDH24	CDH24|p.L437Pfs*35|1|0.36|ENSG00000139880|chr14:23052526-23052527|-/G|frameshift_variant	CDH24|p.L437Pfs*35|1|0.36|ENSG00000139880|chr14:23052526-23052527|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	635.3497924804688	2	635.351137	1268.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.748	1	31.748	31.248	32.248	0								0	0	0	0.89672	1	11692	11692		20.415	2.2682	1				31234	386	19665	19773	30071	30071					0.06412463834476512
SPKKKMKKLQ	10	Unmodified	_SPKKKMKKLQ_					0	0	0			REV__ENST00000462832.5_1_2:29045269-29052078:+|nuORF	REV__ENST00000462832.5_1_2:29045269-29052078:+|nuORF	MSMS	HCT116MG_D190212_S1	1	608.38525390625	2	608.383926	1214.7533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.71	1	39.71	39.21	40.21	0								0	0	0	0.96521	1	14904	14904		1.3295	0	1		+		31235	15800	19666	19774	30072	30072					0.15451161755822795
SPKLRRNAHS	10	Unmodified	_SPKLRRNAHS_					0	0	0		nc|ENSG00000108100|Q8ND76-2|CCNY;ENSG00000108100|ENST00000374704|CCNY	nc|ENSG00000108100|Q8ND76-2|CCNY	nc|ENSG00000108100|Q8ND76-2|CCNY	MSMS	HCT116MG_D190212_S2	2	583.33203125	2	583.33107	1164.64759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.541	1	38.457	37.957	38.957	-0.084618								0	0	0	0.92917	1	14480	14480		9.3831	0.63772	1				31236	2148	19667	19775	30073	30073					0.0718496195456737
SPLMYQPQ	8	Unmodified	_SPLMYQPQ_					0	0	0		nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	MSMS	HCT116MG_D190212_S4	4	482.2360534667969	2	482.233853	962.453153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.999	1	19.805	19.305	20.305	-0.19367								0	0	0	0.85589	1	6819	6819		18.135	1.1927	1				31237	2764	19668	19776	30074	30074					-0.029575502456054892
SPLQRSPA	8	Unmodified	_SPLQRSPA_					0	0	0		ENST00000558939.5_1_15:70389883-70390096:-|nuORF	ENST00000558939.5_1_15:70389883-70390096:-|nuORF	ENST00000558939.5_1_15:70389883-70390096:-|nuORF	MSMS	HCT116MG_D190212_S2	2	428.23779296875	2	428.237784	854.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.877	1	10.603	10.103	11.103	-0.27365								0	0	0	0.8837	1	3470	3470		12.532	0	1				31238	8805	19669	19777	30075	30075					0.027963450661786737
SPLVAISGVA	10	Unmodified	_SPLVAISGVA_					0	0	0		PAPPA|p.L1488Qfs*6|1|0.82|ENSG00000182752|chr9:116362706-116362707|CT/-|frameshift_variant;ENSG00000182752|ENST00000328252|PAPPA	PAPPA|p.L1488Qfs*6|1|0.82|ENSG00000182752|chr9:116362706-116362707|CT/-|frameshift_variant	PAPPA|p.L1488Qfs*6|1|0.82|ENSG00000182752|chr9:116362706-116362707|CT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	913.535888671875	1	913.535309	912.528032	0.73687	0.00067316	0.26446	0.00024159	1.0013	0.00091475	913.5357526319601	55.694	0.15543	55.509	55.431	55.587	-0.18565					4	2	2	0	0	0	0.30623	1	21501	21501		49.933	1.5872	1	26677000			31239	5685	19670	19778	30076	30076					0.06826955557289693
SPNPADAQFVF	11	Unmodified	_SPNPADAQFVF_					0	0	0			REV__ENSG00000105011|ENST00000263382|ASF1B	REV__ENSG00000105011|ENST00000263382|ASF1B	MSMS	HCT116MG_D190212_S4	4	596.7844848632812	2	596.785296	1191.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.536	1	32.157	31.657	32.657	-0.37924								0	0	0	0.90987	1	11854	11854		18.721	4.3158	1		+		31240	11232	19671	19779	30077	30077					-0.03207766253308364
SPPDNTSNFGH	11	Unmodified	_SPPDNTSNFGH_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MSMS	HCT116MG_D190212_S3	3	586.7517700195312	2	586.751984	1171.48942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.493	1	30.244	29.744	30.744	-0.24946								0	0	0	0.85129	1	11109	11109		26.268	3.5319	1		+		31241	12914	19672	19780	30078	30078					-0.08947001815204203
SPPKQGNQPP	10	Unmodified	_SPPKQGNQPP_					0	0	0			REV__ENSG00000187513|ENST00000342280|GJA4	REV__ENSG00000187513|ENST00000342280|GJA4	MULTI-SECPEP	HCT116MG_D190212_S3	3	525.2487182617188	2	525.272355	1048.53016	0.33664	0.00017683	0.047198	2.4792E-05	0.38384	0.00020162	525.2723089078486	19.123	0.46807	19.192	18.927	19.395	0.069159					14	8	2	0	0	0	0.24623	1	6611	6611		22.736	8.8302	1	3308600	+		31242	13923	19673	19781	30079	30079					0.00783384295095857
SPPQGQGQPAP	11	Unmodified	_SPPQGQGQPAP_					0	0	0			REV__nc|ENSG00000137693|P46937-5|YAP1	REV__nc|ENSG00000137693|P46937-5|YAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	532.2622680664062	2	532.261988	1062.50942	0.47033	0.00025034	0.069685	3.709E-05	0.54001	0.00028743	532.2619289550713	21.873	0.83081	21.655	21.114	21.945	-0.21832					35	15	3	0	0	0	0.60456	1	7520	7520		34.932	0.53034	1	8976100	+		31243	12184	19674	19782	30080	30080					-0.019332060845727028
SPRLFKARLN	10	Unmodified	_SPRLFKARLN_					0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MSMS	HCT116MG_D190212_S4	4	601.3616943359375	2	601.361839	1200.70913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.246	1	57.957	57.457	58.457	-0.28879								0	0	0	0.95648	1	21886	21886		3.2813	0	1		+		31244	17166	19675	19783	30081	30081					0.11679893653831641
SPRLNQWDP	9	Unmodified	_SPRLNQWDP_					0	0	0			REV__ENSG00000179222|ENST00000326587|MAGED1	REV__ENSG00000179222|ENST00000326587|MAGED1	MULTI-SECPEP	HCT116MG_D190212_S2	2	371.22772216796875	3	371.520962	1111.54106	-0.081718	-3.036E-05	0.067779	2.5181E-05	-0.013939	-5.1787E-06	371.5208809332684	32.117	0.62188	31.886	31.373	31.995	-0.23009					17	11	2	0	0	0	0.26745	1	11767	11767		0.96228	0	1	12916000	+		31245	13633	19676	19784	30082	30082					-0.010252133306039468
SPRRLGWPEL	10	Unmodified	_SPRRLGWPEL_					0	0	0			REV__ENST00000492736.1_1_8:101965500-101965572:-|nuORF	REV__ENST00000492736.1_1_8:101965500-101965572:-|nuORF	MSMS	HCT116MG_D190212_S1	1	404.22772216796875	3	404.22789	1209.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.931	1	57.931	57.431	58.431	0								0	0	0	0.96263	1	22302	22302		1.9064	0	1		+		31246	16056	19677	19785	30083	30083					0.06539614382859327
SPRRWWALWEW	11	Unmodified	_SPRRWWALWEW_					0	0	0			REV__ENST00000465124.1_1_9:127634977-127635226:+|nuORF	REV__ENST00000465124.1_1_9:127634977-127635226:+|nuORF	MSMS	HCT116MG_D190212_S3	3	786.8964233398438	2	786.896577	1571.7786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.64	1	39.339	38.839	39.839	-0.30137								0	0	0	0.95954	1	14720	14720		1.3295	0.9789	1		+		31247	15815	19678	19786	30084	30084					0.015583526025920946
SPRTAPAP	8	Unmodified	_SPRTAPAP_					0	0	0		ENST00000379705.7_1_13:38357476-38444175:-|nuORF	ENST00000379705.7_1_13:38357476-38444175:-|nuORF	ENST00000379705.7_1_13:38357476-38444175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	398.71917724609375	2	398.719227	795.423902	0.12082	4.8173E-05	-0.15239	-6.0759E-05	-0.031566	-1.2586E-05	398.71893369863557	21.411	0.83082	21.192	20.855	21.685	-0.21832					20	15	2	0	0	0	0.69862	1	7429	7429		23.148	6.0619	1	1528500			31248	7557	19679	19787	30085	30085					0.018006735204266988
SPSAPPSPRNP	11	Unmodified	_SPSAPPSPRNP_					0	0	0		ENST00000436367.5_1_6:16658120-16761659:-|nuORF;ENST00000479680.1_1_6:16753430-16761659:-|nuORF;ENST00000467008.5_1_6:16739996-16761659:-|nuORF;ENST00000492857.1_1_6:16740003-16761659:-|nuORF	ENST00000436367.5_1_6:16658120-16761659:-|nuORF	ENST00000436367.5_1_6:16658120-16761659:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7830810546875	2	553.783087	1105.55162	0.23329	0.00012919	-0.41563	-0.00023017	-0.18233	-0.00010097	553.7828278170914	21.808	1.1424	21.423	20.857	21.999	-0.38503					29	21	3	0	0	0	0.6626	1	7694	7694		28.495	5.7582	1	16197000			31249	7885	19680	19788	30086	30086					0.0030676932381084043
SPSLSWLVV	9	Unmodified	_SPSLSWLVV_					0	0	0			REV__ENST00000411753.1_1_3:31495177-31495447:+|nuORF	REV__ENST00000411753.1_1_3:31495177-31495447:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	493.8031311035156	2	494.279118	986.543683	0.28812	0.00014241	-0.14607	-7.22E-05	0.14205	7.0211E-05	494.27885465424976	42.299	0.4146	42.23	41.964	42.379	-0.068199					12	7	2	0	0	0	0.21227	1	16000	16000		28.487	0	1	13884000	+		31250	15446	19681	19789	30087	30087					0.049872420743326984
SPSPRWAQP	9	Unmodified	_SPSPRWAQP_					0	0	0			REV__HCN4|p.A21Pfs*211|2|0.22|ENSG00000138622|chr15:73368210-73368210|C/-|frameshift_variant	REV__HCN4|p.A21Pfs*211|2|0.22|ENSG00000138622|chr15:73368210-73368210|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	513.339599609375	2	513.261791	1024.50903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.08	1	28.08	27.58	28.58	0								0	0	0	0.67173	1	10216	10216		20.454	5.6154	1		+		31251	16870	19682	19790	30088	30088					-0.0022458101377651474
SPSQPGPAG	9	Unmodified	_SPSQPGPAG_					0	0	0		ENST00000333646.10_2_X:70338413-70338623:+|nuORF	ENST00000333646.10_2_X:70338413-70338623:+|nuORF	ENST00000333646.10_2_X:70338413-70338623:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	797.379150390625	1	797.378808	796.371532	0.86621	0.00069069	-0.14673	-0.000117	0.71948	0.0005737	797.3786286449753	29.277	2.7076	29.055	27.431	30.139	-0.22195					70	51	2	0	0	0	0.36396	1	10292	10292		24.674	2.9272	1	4567300			31252	7178	19683	19791	30089	30089					-0.034799096131791885
SPSSTPPIP	9	Unmodified	_SPSSTPPIP_					0	0	0			REV__TENM2|p.L1355*|1|0.14|ENSG00000145934|chr5:168215255-168215255|C/-|frameshift_variant	REV__TENM2|p.L1355*|1|0.14|ENSG00000145934|chr5:168215255-168215255|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	882.4595336914062	1	882.456724	881.449448	0.81565	0.00071977	0.10564	9.3218E-05	0.92128	0.00081299	882.4568656851862	37.216	0.67617	36.915	36.561	37.237	-0.30137					20	12	2	0	0	0	0.026974	1	13743	13743		89.427	0	1	4004100	+		31253	12467	19684	19792	30090	30090					0.0039810325220059894
SPSYVETWV	9	Unmodified	_SPSYVETWV_					0	0	0			REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	MSMS	HCT116MG_D190212_S4	4	534.2557983398438	2	534.25584	1066.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.078	1	28.737	28.237	29.237	-0.34059								0	0	0	0.76739	1	10485	10485		10.074	0.6908	1		+		31254	12594	19685	19793	30091	30091					-0.03346242547627298
SPTAENVGKPT	11	Unmodified	_SPTAENVGKPT_					0	0	0		ENSG00000127990|ENST00000648936|SGCE;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE	ENSG00000127990|ENST00000648936|SGCE	ENSG00000127990|ENST00000648936|SGCE	MULTI-SECPEP	HCT116MG_D190212_S4	4	550.2176513671875	2	550.782753	1099.55095	0.53621	0.00029534	-0.42704	-0.00023521	0.10917	6.0127E-05	550.7824838312142	23.718	0.46805	23.47	23.272	23.74	-0.24775					11	8	2	0	0	0	0.35938	1	8341	8341		7.609	0	1	2071600			31255	2985	19686	19794	30092	30092					0.005159298840908377
SPTEGPAP	8	Unmodified	_SPTEGPAP_					0	0	0		ENST00000530142.5_1_8:145581065-145582036:-|nuORF;ENST00000524492.5_1_8:145581286-145581550:-|nuORF	ENST00000530142.5_1_8:145581065-145582036:-|nuORF	ENST00000530142.5_1_8:145581065-145582036:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	755.3580322265625	1	755.35701	754.349734	1.0012	0.00075629	-0.033289	-2.5145E-05	0.96795	0.00073115	755.3566390668612	24.856	2.2366	24.587	22.884	25.121	-0.26881					71	42	3	0	0	0	0.40466	1	8946	8946		49.669	0	1	11601000			31256	8614	19687	19795	30093	30093					-0.03726714361766881
SPTGPPWHCP	10	Unmodified	_SPTGPPWHCP_					0	0	0		ENST00000367279.8_1_1:202116165-202116303:-|nuORF	ENST00000367279.8_1_1:202116165-202116303:-|nuORF	ENST00000367279.8_1_1:202116165-202116303:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	539.744140625	2	539.742376	1077.4702	0.3551	0.00019166	1.5905	0.00085849	1.9457	0.0010502	539.7435849538751	21.263	0.62879	21.281	20.906	21.535	0.018446					16	11	2	0	0	0	0.77749	1	7357	7357		13.906	3.0821	1	3321900			31257	7384	19688	19796	30094	30094					-0.06543629639782012
SPTQLWTYKQL	11	Unmodified	_SPTQLWTYKQL_					0	0	0			REV__CTC1|p.R542W|1|0.18|ENSG00000178971|chr17:8234649-8234649|G/A|missense_variant	REV__CTC1|p.R542W|1|0.18|ENSG00000178971|chr17:8234649-8234649|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	682.8618774414062	2	682.864077	1363.7136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.483	1	37.099	36.599	37.599	-0.3839								0	0	0	0.94538	1	13757	13757		8.7454	0	1		+		31258	10302	19689	19797	30095	30095					0.04629313286068282
SPTRPVADLVP	11	Unmodified	_SPTRPVADLVP_					0	0	0			REV__SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant	REV__SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	576.3226928710938	2	576.324588	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.364	1	29.014	28.514	29.514	-0.34921								0	0	0	0.93552	1	10600	10600		13.906	3.8321	1		+		31259	13176	19690	19798	30096	30096					0.06533086051786086
SPTSPGVCCCV	11	Unmodified	_SPTSPGVCCCV_					0	0	0			REV__ENSG00000120907|ENST00000380573|ADRA1A	REV__ENSG00000120907|ENST00000380573|ADRA1A	MSMS	HCT116MG_D190212_S3	3	526.7124633789062	2	526.714113	1051.41367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.801	1	18.871	18.371	19.371	0.069159								0	0	0	0.92235	1	6408	6408		17.113	0.1706	1		+		31260	11704	19691	19799	30097	30097					-0.10997761582984822
SPTSPVAET	9	Unmodified	_SPTSPVAET_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;UBR2|p.N1139Tfs*65|1|0.07|ENSG00000024048|chr6:42659824-42659824|A/-|frameshift_variant;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	HCT116MG_D190212_S4	4	444.7184143066406	2	444.71909	887.423627	0.45124	0.00020067	-0.71945	-0.00031995	-0.26821	-0.00011928	444.71857318795367	24.844	0.41545	24.575	24.393	24.809	-0.26881					10	7	2	0	0	0	0.41514	1	8779	8779		21.747	0	1	7561800			31261	950	19692	19800	30098	30098					-0.024587909901015337
SPTTEETSTQP	11	Unmodified	_SPTTEETSTQP_					0	0	0		ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000238083|ENST00000576629|LRRC37A2	ENSG00000238083|ENST00000576629|LRRC37A2	MULTI-MSMS	HCT116MG_D190212_S2	2	589.2652587890625	2	589.26459	1176.51463	0.33547	0.00019768	1.425	0.00083969	1.7604	0.0010374	589.2650793570539	19.023	0.57264	18.653	18.211	18.784	-0.3695					23	10	3	0	0	0	0.71532	1	6571	6571		16.149	1.3108	1	7488900			31262	5429	19693	19801	30099	30099					-0.06656991803288292
SPTVLRLLIDL	11	Unmodified	_SPTVLRLLIDL_					0	0	0			REV__ENST00000294728.6_1_1:101185471-101186103:+|nuORF	REV__ENST00000294728.6_1_1:101185471-101186103:+|nuORF	MSMS	HCT116MG_D190212_S3	3	620.3855590820312	2	620.387188	1238.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.194	1	44.885	44.385	45.385	-0.30927								0	0	0	0.93717	1	16914	16914		13.042	2.2185	1		+		31263	14755	19694	19802	30100	30100					0.1499937818819035
SPVGPPSD	8	Unmodified	_SPVGPPSD_					0	0	0			REV__SEMA4B|p.S797Vfs*6|1|0.32|ENSG00000185033|chr15:90228507-90228508|-/C|frameshift_variant	REV__SEMA4B|p.S797Vfs*6|1|0.32|ENSG00000185033|chr15:90228507-90228508|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	755.3573608398438	1	755.35701	754.349734	1.0012	0.00075629	-0.033289	-2.5145E-05	0.96795	0.00073115	755.3566390668612	24.856	2.2366	24.587	22.884	25.121	-0.26881					71	42	3	0	0	0	0.55794	1	8712	8712		36.044	0	1	11601000	+		31264	17505	19695	19803	30101	30101					-0.03726714361766881
SPVLGPPP	8	Unmodified	_SPVLGPPP_					0	0	0			REV__nc|ENSG00000182158|Q70SY1-3|CREB3L2	REV__nc|ENSG00000182158|Q70SY1-3|CREB3L2	MULTI-MSMS	HCT116MG_D190212_S2	2	382.220947265625	2	382.221072	762.42759	-0.0087484	-3.3438E-06	0.15462	5.9101E-05	0.14588	5.5757E-05	382.2210526138436	33.806	0.20839	33.613	33.482	33.691	-0.19297					6	3	2	0	0	0	0.2535	1	12581	12581		63.394	3.5985	1	22016000	+		31265	13706	19696	19804	30102	30102					0.03687343294279799
SPVLGPPP	8	Unmodified	_SPVLGPPP_					0	0	0			REV__nc|ENSG00000182158|Q70SY1-3|CREB3L2	REV__nc|ENSG00000182158|Q70SY1-3|CREB3L2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	382.221072	762.42759	-0.0087484	-3.3438E-06	0.15462	5.9101E-05	0.14588	5.5757E-05	382.2210526138436	33.806	0.20839	33.613	33.482	33.691	-0.19297	-0.031729	7.076E-06	NaN	63.394	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22016000	+		31266	13706	19696	19804							0.03687343294279799
SPVPNPSP	8	Unmodified	_SPVPNPSP_					0	0	0			REV__ENST00000415344.1_1_9:132892058-132895470:+|nuORF	REV__ENST00000415344.1_1_9:132892058-132895470:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	397.2444763183594	2	397.705786	793.397018	-0.057319	-2.2796E-05	-0.039923	-1.5877E-05	-0.097242	-3.8674E-05	397.7056079616802	32.615	0.36515	32.404	32.221	32.586	-0.21135					10	6	3	0	0	0	0.30262	1	12131	12131		8.5933	0	1	27234000	+		31267	15467	19697	19805	30103	30103					-0.007944350907564512
SPVQPGAP	8	Unmodified	_SPVQPGAP_					0	0	0		nc|ENSG00000054965|Q92567-3|FAM168A;FAM168A|p.Y123Tfs*89|2|0.29|ENSG00000054965|chr11:73411475-73411475|G/-|frameshift_variant;ENSG00000054965|ENST00000356467|FAM168A;ENST00000432223.2_1_11:73141522-73179519:-|nuORF;nc|ENSG00000054965|Q92567|FAM168A	nc|ENSG00000054965|Q92567-3|FAM168A	nc|ENSG00000054965|Q92567-3|FAM168A	MULTI-MSMS	HCT116MG_D190212_S2	2	376.6947937011719	2	376.700503	751.386454	0.033181	1.2499E-05	0.0089535	3.3728E-06	0.042134	1.5872E-05	376.7003691894342	33.686	0.25988	33.493	33.327	33.587	-0.19297					9	4	3	0	0	0	0.83066	1	12466	12466		7.9102	0	1	47967000			31268	1075	19698	19806	30104	30104					0.0008158225481338377
SPVRRRRRRP	10	Unmodified	_SPVRRRRRRP_					0	0	0		nc|ENSG00000177602|Q8TF76-2|HASPIN;ENSG00000177602|ENST00000325418|HASPIN	nc|ENSG00000177602|Q8TF76-2|HASPIN	nc|ENSG00000177602|Q8TF76-2|HASPIN	MSMS	HCT116MG_D190212_S1	1	445.94830322265625	3	445.948343	1334.8232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6878	1	2.6878	2.1878	3.1878	0								0	0	0	0.97116	1	805	805		0	0	1				31269	5464	19699	19807	30105	30105					0.16918221259288657
SPWRTDVRYG	10	Unmodified	_SPWRTDVRYG_					0	0	0		MXRA5|p.R2154W|2|0.29|ENSG00000101825|chrX:3317221-3317221|G/A|missense_variant	MXRA5|p.R2154W|2|0.29|ENSG00000101825|chrX:3317221-3317221|G/A|missense_variant	MXRA5|p.R2154W|2|0.29|ENSG00000101825|chrX:3317221-3317221|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	412.8758239746094	3	412.875516	1235.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.614	1	12.614	12.114	13.114	0								0	0	0	0.96937	1	4057	4057		0.13989	0	1				31270	9348	19700	19808	30106	30106					-0.003658528935375216
SQASPNPVPGD	11	Unmodified	_SQASPNPVPGD_					0	0	0		nc|ENSG00000132773|Q96GM8-2|TOE1;ENSG00000132773|ENST00000372090|TOE1;ENST00000495703.5_1_1:45808500-45809371:+|nuORF	nc|ENSG00000132773|Q96GM8-2|TOE1	nc|ENSG00000132773|Q96GM8-2|TOE1	MULTI-SECPEP	HCT116MG_D190212_S4	4	535.2402954101562	2	534.751453	1067.48835	0.28332	0.00015151	-0.30638	-0.00016384	-0.023055	-1.2329E-05	534.7512876599568	18.012	1.3489	17.837	17.428	18.777	-0.17501					43	25	2	0	0	0	0.35699	1	6244	6244		18.373	8.2225	1	4127100			31271	3210	19701	19809	30107	30107					-0.04269216184070501
SQDCPKAWQW	10	Unmodified	_SQDCPKAWQW_					0	0	0		ENST00000506770.5_1_4:3949467-3952929:-|nuORF;ENST00000510506.5_1_4:3948559-3952929:-|nuORF	ENST00000506770.5_1_4:3949467-3952929:-|nuORF	ENST00000506770.5_1_4:3949467-3952929:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	624.7772216796875	2	624.776948	1247.53934	0.46632	0.00029135	0.47245	0.00029518	0.93878	0.00058653	625.278743849182	45.295	0.31324	44.985	44.836	45.149	-0.30987					10	5	3	0	0	0	0.78781	1	16965	16965		13.042	13.042	1	5398900			31272	8466	19702	19810	30108	30108					-0.0745259041088957
SQDCPKAWQW	10	Unmodified	_SQDCPKAWQW_					0	0	0		ENST00000506770.5_1_4:3949467-3952929:-|nuORF;ENST00000510506.5_1_4:3948559-3952929:-|nuORF	ENST00000506770.5_1_4:3949467-3952929:-|nuORF	ENST00000506770.5_1_4:3949467-3952929:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	624.776948	1247.53934	0.66094	0.00041294	1.0641	0.00066484	1.7251	0.0010778	624.777325134758	45.034	0.31371	44.941	44.735	45.049	-0.092472	-0.038595	0.00064626	NaN	13.042	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6673100			31273	8466	19702	19810							-0.0745259041088957
SQDCPKAWQW	10	Unmodified	_SQDCPKAWQW_					0	0	0		ENST00000506770.5_1_4:3949467-3952929:-|nuORF;ENST00000510506.5_1_4:3948559-3952929:-|nuORF	ENST00000506770.5_1_4:3949467-3952929:-|nuORF	ENST00000506770.5_1_4:3949467-3952929:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	624.776948	1247.53934	0.36772	0.00022975	1.1021	0.00068854	1.4698	0.00091829	624.777330173431	45.386	0.20745	45.013	44.832	45.039	-0.37266	0.033335	0.00069367	NaN	13.042	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1632300			31274	8466	19702	19810							-0.0745259041088957
SQDFPGSNL	9	Unmodified	_SQDFPGSNL_					0	0	0		ENSG00000157557|ENST00000360938|ETS2;ENST00000556491.1_1_14:68086736-68113430:+|nuORF	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	HCT116MG_D190212_S2	2	964.4378662109375	1	964.437051	963.429775	0.76759	0.00074029	0.31028	0.00029924	1.0779	0.0010395	964.4376043897634	41.575	0.61856	41.507	41.242	41.861	-0.068199					14	11	2	0	0	0	0.0068642	1	15735	15735		121.35	51.014	1	17622000			31275	4333	19703	19811	30109	30109					-0.053402727585535104
SQDPGTHVV	9	Unmodified	_SQDPGTHVV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	HCT116MG_D190212_S1	1	470.2303161621094	2	470.230156	938.445759	0.25088	0.00011797	-0.55331	-0.00026018	-0.30243	-0.00014221	470.2301149935349	22.611	0.41711	22.611	22.376	22.793	0					12	7	3	0	0	0	0.16144	1	8040	8040		46.021	9.8939	1	7146000			31276	3114	19704	19812	30110	30110					-0.025925665216618654
SQDPGTHVV	9	Unmodified	_SQDPGTHVV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	HCT116MG_D190212_S2	2	470.2304382324219	2	470.230156	938.445759	0.17356	8.1615E-05	0.43557	0.00020482	0.60913	0.00028643	470.2303187525468	23.1	0.20825	22.714	22.622	22.83	-0.3852					5	3	2	0	0	0	0.12994	1	8239	8239		52.268	17.867	1	13428000			31277	3114	19704	19812	30111	30111					-0.025925665216618654
SQEVEDVRWRK	11	Unmodified	_SQEVEDVRWRK_					0	0	0			REV__ENSG00000233232|ENST00000452313|NPIPB7	REV__ENSG00000233232|ENST00000452313|NPIPB7	MSMS	HCT116MG_D190212_S1	1	477.91748046875	3	477.916152	1430.72663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.878	1	13.878	13.378	14.378	0								0	0	0	0.9619	1	4518	4518		0.094841	0	1		+		31278	14022	19705	19813	30112	30112					0.02849144398169301
SQFLSFFAAL	10	Unmodified	_SQFLSFFAAL_					0	0	0			REV__ENST00000511171.5_1_6:33748933-33749074:-|nuORF	REV__ENST00000511171.5_1_6:33748933-33749074:-|nuORF	MSMS	HCT116MG_D190212_S2	2	377.5349426269531	3	377.534209	1129.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.259	1	14.932	14.432	15.432	-0.32684								0	0	0	0.95351	1	5057	5057		1.9064	0.79662	1		+		31279	16182	19706	19814	30113	30113					0.02118913620074636
SQFSGKITV	9	Unmodified	_SQFSGKITV_					0	0	0		TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131;TMEM131|p.L538Ffs*27|1|0.09|ENSG00000075568|chr2:97813974-97813975|-/A|frameshift_variant;TMEM131|p.G555Wfs*10|1|0.32|ENSG00000075568|chr2:97812704-97812705|-/A|frameshift_variant;TMEM131|p.N815Ifs*2|1|0.27|ENSG00000075568|chr2:97802749-97802749|T/-|frameshift_variant;TMEM131|p.N815Kfs*9|1|0.31|ENSG00000075568|chr2:97802748-97802749|-/T|frameshift_variant	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	483.76702880859375	2	483.766374	965.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.282	1	37.178	36.678	37.678	-0.10318								0	0	0	0.053528	1	13969	13969		69.338	24.931	1				31280	1320	19707	19815	30114	30114					0.03405767551896588
SQGPCCSH	8	Unmodified	_SQGPCCSH_					0	0	0			REV__AluSp_dup30039|chr11:2206832-2207060:-|1.0360777825034435|0.0074288008312297|7.12|456.0|10|1|anti-sense	REV__AluSp_dup30039|chr11:2206832-2207060:-|1.0360777825034435|0.0074288008312297|7.12|456.0|10|1|anti-sense	MULTI-SECPEP	HCT116MG_D190212_S1	1	817.7245483398438	1	818.291984	817.284707	0.97745	0.00079984	0.68158	0.00055773	1.659	0.0013576	818.2923790069543	20.982	0.2668	20.982	20.8	21.067	0					7	4	2	0	0	0	0.33109	1	7364	7364		2.3027	0	1	13986000	+		31281	9927	19708	19816	30115	30115					-0.13124355430909418
SQHGSPSPKPQ	11	Unmodified	_SQHGSPSPKPQ_					0	0	0			REV__ENSG00000167612|ENST00000301190|ANKRD33	REV__ENSG00000167612|ENST00000301190|ANKRD33	MULTI-MSMS	HCT116MG_D190212_S4	4	575.2860717773438	2	575.285994	1148.55744	0.46976	0.00027025	-0.40126	-0.00023084	0.068503	3.9409E-05	575.2855610716766	23.889	0.41598	23.631	23.365	23.781	-0.25816					12	7	2	0	0	0	0.7093	1	8360	8360		18.373	3.1246	1	3429200	+		31282	13155	19709	19817	30116	30116					-0.010901321645178541
SQHPATQTP	9	Unmodified	_SQHPATQTP_					0	0	0		nc|ENSG00000196668|Q6ZV60|LINC00173	nc|ENSG00000196668|Q6ZV60|LINC00173	nc|ENSG00000196668|Q6ZV60|LINC00173	MULTI-SECPEP	HCT116MG_D190212_S2	2	483.2690734863281	2	483.735606	965.456658	0.51592	0.00024957	-1.2142	-0.00058738	-0.69833	-0.00033781	483.7353469493283	33.503	0.25631	33.31	33.174	33.43	-0.19297					7	4	2	0	0	0	0.23301	1	12383	12383		15.847	0	1	18467000			31283	9597	19710	19818	30117	30117					-0.027451641473930977
SQHRPLLPNL	10	Unmodified	_SQHRPLLPNL_					0	0	0		PRRC2A|p.R477Afs*94|1|0.28|ENSG00000204469|chr6:31627901-31627901|G/-|frameshift_variant	PRRC2A|p.R477Afs*94|1|0.28|ENSG00000204469|chr6:31627901-31627901|G/-|frameshift_variant	PRRC2A|p.R477Afs*94|1|0.28|ENSG00000204469|chr6:31627901-31627901|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	392.2278747558594	3	392.22789	1173.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.659	1	58.494	57.994	58.994	-0.1653								0	0	0	0.96377	1	22676	22676		0.69767	0	1				31284	9783	19711	19819	30118	30118					0.08195614382862004
SQHVVTNY	8	Unmodified	_SQHVVTNY_					0	0	0		ENSG00000159433|ENST00000290607|STARD9;nc|ENSG00000159433|Q9P2P6-2|STARD9;ENST00000564158.5_1_15:42867889-42955097:+|nuORF;nc|ENSG00000159433|Q9P2P6-3|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	HCT116MG_D190212_S2	2	474.7351379394531	2	474.232699	946.450845	0.41715	0.00019783	0.15084	7.1534E-05	0.568	0.00026936	474.2327033881055	31.821	0.7774	31.572	31.406	32.183	-0.24883					27	14	3	0	0	0	0.60054	1	11751	11751		32.305	1.0371	1	42274000			31285	4413	19712	19820	30119	30119					-0.024522626590396612
SQHVVTNY	8	Unmodified	_SQHVVTNY_					0	0	0		ENSG00000159433|ENST00000290607|STARD9;nc|ENSG00000159433|Q9P2P6-2|STARD9;ENST00000564158.5_1_15:42867889-42955097:+|nuORF;nc|ENSG00000159433|Q9P2P6-3|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	HCT116MG_D190212_S3	3	474.724853515625	2	474.232699	946.450845	0.093301	4.4246E-05	0.5171	0.00024523	0.6104	0.00028947	474.2328551985564	32.038	0.6242	31.76	31.474	32.098	-0.27841					28	11	3	0	0	0	0.2988	1	11728	11728		15.847	0	1	38318000			31286	4413	19712	19820	30120	30120					-0.024522626590396612
SQIEADFRL	9	Unmodified	_SQIEADFRL_					0	0	0		TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant;ENSG00000198900|ENST00000361337|TOP1	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	539.7811279296875	2	539.780013	1077.54547	0.31322	0.00016907	0.34945	0.00018862	0.66266	0.00035769	539.7801639590289	48.434	0.25687	48.434	48.306	48.563	0					9	4	3	0	0	0	0.11363	1	18432	18432		55.503	15.553	1	41131000			31287	6294	19713	19821	30121	30121					0.009802510922781948
SQIEADFRL	9	Unmodified	_SQIEADFRL_					0	0	0		TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant;TOP1|p.C453Mfs*40|1|0.27|ENSG00000198900|chr20:41112823-41112824|-/A|frameshift_variant;TOP1|p.T639Lfs*6|1|0.45|ENSG00000198900|chr20:41118257-41118257|A/-|frameshift_variant;ENSG00000198900|ENST00000361337|TOP1	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	TOP1|p.K333Nfs*3|1|0.34|ENSG00000198900|chr20:41100075-41100075|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7801513671875	2	539.780013	1077.54547	0.64415	0.0003477	-0.45006	-0.00024294	0.19408	0.00010476	539.7796136461691	48.507	0.40635	48.363	48.235	48.642	-0.1437					10	7	2	0	0	0	0.15281	2	18557	18522;18557		47.732	20.103	1	124080000			31288	6294	19713	19821	30122;30123	30123					0.009802510922781948
SQIEAIEA	8	Unmodified	_SQIEAIEA_					0	0	0			REV__RALBP1|p.R516C|1|0.25|ENSG00000017797|chr18:9533425-9533425|C/T|missense_variant	REV__RALBP1|p.R516C|1|0.25|ENSG00000017797|chr18:9533425-9533425|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	860.4359741210938	1	860.435989	859.428712	0.66085	0.00056862	-0.039867	-3.4303E-05	0.62098	0.00053432	860.4358323789953	37.129	0.28611	36.744	36.639	36.925	-0.38486					8	5	2	0	0	0	0.20876	1	13642	13642		71.922	4.5784	1	3268000	+		31289	10546	19714	19822	30124	30124					-0.0066248712747665195
SQIEIYIFK	9	Unmodified	_SQIEIYIFK_					0	0	0		ENST00000539047.1_1_12:6574469-6579793:-|nuORF	ENST00000539047.1_1_12:6574469-6579793:-|nuORF	ENST00000539047.1_1_12:6574469-6579793:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	570.8187866210938	2	570.818607	1139.62266	0.47589	0.00027165	0.265	0.00015126	0.74088	0.00042291	570.8184036749303	56.004	0.20411	55.818	55.691	55.895	-0.18565					9	3	4	0	0	0	0.58135	1	21623	21623		12.241	0	1	34089000			31290	8679	19715	19823	30125	30125					0.0584346930859283
SQIPNQSLD	9	Unmodified	_SQIPNQSLD_					0	0	0			REV__NRXN1|p.I561Yfs*12|1|0.02|ENSG00000179915|chr2:50552666-50552667|-/T|frameshift_variant	REV__NRXN1|p.I561Yfs*12|1|0.02|ENSG00000179915|chr2:50552666-50552667|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	501.78369140625	2	501.248546	1000.48254	0.5423	0.00027183	0.055539	2.7839E-05	0.59784	0.00029967	501.2486675682148	34.859	0.2074	34.701	34.606	34.813	-0.15834					5	3	2	0	0	0	0.2025	1	13007	13007		25.399	0	1	10697000	+		31291	10552	19716	19824	30126	30126					-0.017683146957665485
SQLEFERRL	9	Unmodified	_SQLEFERRL_					0	0	0			REV__nc|ENSG00000149639|O94964-1|MTCL2	REV__nc|ENSG00000149639|O94964-1|MTCL2	MSMS	HCT116MG_D190212_S2	2	589.3195190429688	2	589.319837	1176.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.946	1	32.735	32.235	33.235	-0.21135								0	0	0	0.60272	1	12208	12208		32.305	9.5692	1		+		31292	12571	19717	19825	30127	30127					0.0438731776628174
SQLSENNVY	9	Unmodified	_SQLSENNVY_					0	0	0		ENST00000463842.1_1_X:133979267-133988244:+|nuORF;ENSG00000156500|ENST00000645433|PABIR3	ENST00000463842.1_1_X:133979267-133988244:+|nuORF	ENST00000463842.1_1_X:133979267-133988244:+|nuORF	MSMS	HCT116MG_D190212_S3	3	527.2455444335938	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.23	1	33.936	33.436	34.436	-0.29419								0	0	0	0.74436	1	12592	12592		16.942	2.104	1				31293	4288	19718	19826	30128	30128					-0.046686185583666884
SQLTYVTL	8	Unmodified	_SQLTYVTL_					0	0	0			REV__ENSG00000155957|ENST00000358230|TMBIM4	REV__ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	HCT116MG_D190212_S2	2	924.4864501953125	1	924.503674	923.496398	1.0884	0.0010063	-0.14261	-0.00013184	0.94582	0.00087442	924.5034321882977	52.452	0.72156	52.265	52.038	52.76	-0.18725					35	13	4	0	0	0	0.20876	1	20106	20106		71.922	7.686	1	523670000	+		31294	12712	19719	19827	30129	30129					0.03158962803343002
SQMHRTLCYWR	11	Unmodified	_SQMHRTLCYWR_					0	0	0		ENST00000496055.5_1_1:76253197-76253299:+|nuORF;ENST00000471759.5_1_1:76253197-76254868:+|nuORF	ENST00000496055.5_1_1:76253197-76253299:+|nuORF	ENST00000496055.5_1_1:76253197-76253299:+|nuORF	MSMS	HCT116MG_D190212_S3	3	740.8477172851562	2	740.850455	1479.68636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.823	1	33.532	33.032	34.032	-0.29013								0	0	0	0.95408	1	12428	12428		4.1895	1.4543	1				31295	8162	19720	19828	30130	30130					-0.03429816797620333
SQPRGVGGQPV	11	Unmodified	_SQPRGVGGQPV_					0	0	0		ENST00000517600.5_1_8:21924352-21927027:+|nuORF	ENST00000517600.5_1_8:21924352-21927027:+|nuORF	ENST00000517600.5_1_8:21924352-21927027:+|nuORF	MSMS	HCT116MG_D190212_S1	1	541.2899780273438	2	541.291079	1080.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.601	1	28.601	28.101	29.101	0								0	0	0	0.91257	1	10423	10423		18.373	0.23811	1				31296	8542	19721	19829	30131	30131					0.030544755607252227
SQQEKRRRSA	10	Unmodified	_SQQEKRRRSA_					0	0	0			REV__ENSG00000151304|ENST00000339397|SRFBP1	REV__ENSG00000151304|ENST00000339397|SRFBP1	MSMS	HCT116MG_D190212_S2	2	623.3411254882812	2	623.342166	1244.66978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.935	1	42.865	42.365	43.365	-0.069984								0	0	0	0.90475	1	16265	16265		14.838	1.7958	1		+		31297	12597	19722	19830	30132	30132					0.057231416323247686
SQRKFVGRH	9	Unmodified	_SQRKFVGRH_					0	0	0			REV__ENST00000480308.5_1_1:161644716-161644821:+|nuORF	REV__ENST00000480308.5_1_1:161644716-161644821:+|nuORF	MSMS	HCT116MG_D190212_S1	1	372.18658447265625	3	372.212463	1113.61556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.2	1	25.2	24.7	25.7	0								0	0	0	0.76886	1	9054	9054		4.897	1.31	1		+		31298	15944	19723	19831	30133	30133					0.06329594271414862
SQRKRHREQYD	11	Unmodified	_SQRKRHREQYD_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	HCT116MG_D190212_S2	2	751.8832397460938	2	751.882187	1501.74982	0.95192	0.00071573	0.27805	0.00020906	1.23	0.00092479	751.8821731759801	45.529	0.87307	45.436	45.256	46.129	-0.092472					36	16	4	0	0	0	0.7332	1	17310	17310		9.544	1.3884	1	144940000			31299	6376	19724	19832	30134	30134					0.019015832355307793
SQRLRKPVM	9	Unmodified	_SQRLRKPVM_					0	0	0		HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant;ENSG00000198331|ENST00000425380|HYLS1	HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant	HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	372.2225036621094	3	372.22197	1113.64408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.428	1	32.428	31.928	32.928	0								0	0	0	0.76954	1	11966	11966		2.4985	0	1				31300	6224	19725	19833	30135	30135					0.09180575856339601
SQRLRKPVM	9	Unmodified	_SQRLRKPVM_					0	0	0		HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant;ENSG00000198331|ENST00000425380|HYLS1	HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant	HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	372.222412109375	3	372.22197	1113.64408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.497	1	32.497	31.997	32.997	0								0	0	0	0.76954	1	11994	11994		2.4985	0	1				31301	6224	19725	19833	30136	30136					0.09180575856339601
SQRLRKPVM	9	Unmodified	_SQRLRKPVM_					0	0	0		HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant;ENSG00000198331|ENST00000425380|HYLS1	HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant	HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	372.2223205566406	3	372.22197	1113.64408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.75	1	28.409	27.909	28.909	-0.34059								0	0	0	0.76954	1	10352	10352		2.4985	0	1				31302	6224	19725	19833	30137	30137					0.09180575856339601
SQRLRKPVM	9	Unmodified	_SQRLRKPVM_					0	0	0		HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant;ENSG00000198331|ENST00000425380|HYLS1	HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant	HYLS1|p.E106Gfs*7|1|0.39|ENSG00000198331|chr11:125899680-125899681|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	372.2222595214844	3	372.22197	1113.64408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.797	1	28.456	27.956	28.956	-0.34059								0	0	0	0.76954	1	10371	10371		2.4985	0	1				31303	6224	19725	19833	30138	30138					0.09180575856339601
SQRRRRKERHK	11	Unmodified	_SQRRRRKERHK_					0	0	0			REV__CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant	REV__CHD3|p.K111Rfs*30|1|0.32|ENSG00000170004|chr17:7890683-7890683|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	512.9732666015625	3	512.973329	1535.89816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6882	1	1.6749	1.1749	2.1749	-0.013221								0	0	0	0.96208	1	547	547		0	0	1		+		31304	10169	19726	19834	30139	30139					0.15164358999845717
SQRRRRKK	8	Unmodified	_SQRRRRKK_					0	0	0			REV__ENST00000380358.8_2_17:7793892-7794294:+|nuORF	REV__ENST00000380358.8_2_17:7793892-7794294:+|nuORF	MSMS	HCT116MG_D190212_S4	4	372.2487487792969	3	372.239123	1113.69554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.977	1	41.601	41.101	42.101	-0.37637								0	0	0	0.8837	1	15411	15411		0.35063	0	1		+		31305	15268	19727	19835	30140	30140					0.14324080665255678
SQRTAQPF	8	Unmodified	_SQRTAQPF_					0	0	0			REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	HCT116MG_D190212_S3	3	935.4830932617188	1	934.474106	933.466829	0.9066	0.0008472	0.86735	0.00081051	1.7739	0.0016577	934.4729479055104	44.206	0.41537	43.898	43.655	44.071	-0.30759					15	7	3	0	0	0	0.76189	1	16572	16572		15.847	1.0089	1	8673400	+		31306	10196	19728	19836	30141	30141					-0.0025655642215269836
SQSKNGEQPPP	11	Unmodified	_SQSKNGEQPPP_					0	0	0			REV__PRB4|p.R174Q|1|0.5|ENSG00000230657|chr12:11308462-11308462|C/T|missense_variant	REV__PRB4|p.R174Q|1|0.5|ENSG00000230657|chr12:11308462-11308462|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	584.8016357421875	2	584.783284	1167.55202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.357	1	16.015	15.515	16.515	-0.34183								0	0	0	0.78405	1	5499	5499		34.932	2.6266	1		+		31307	17440	19729	19837	30142	30142					-0.025058557469947118
SQVCGAREVP	10	Unmodified	_SQVCGAREVP_					0	0	0		ENST00000476727.6_1_9:130931703-130953136:-|nuORF	ENST00000476727.6_1_9:130931703-130953136:-|nuORF	ENST00000476727.6_1_9:130931703-130953136:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	523.759765625	2	523.258391	1044.50223	0.27691	0.00014489	0.11389	5.9592E-05	0.39079	0.00020448	523.2584542055065	32.328	0.77856	31.949	31.742	32.52	-0.37924					23	14	3	0	0	0	0.67188	1	11768	11768		22.736	2.3217	1	5756500			31308	8207	19730	19838	30143	30143					-0.018242619566535723
SQVCYLGYFKP	11	Unmodified	_SQVCYLGYFKP_					0	0	0			REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF	REV__ENST00000587482.1_1_19:3649915-3700388:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	652.8209838867188	2	652.820824	1303.62709	0.37932	0.00024763	0.28098	0.00018343	0.6603	0.00043106	652.8208377472135	23.191	0.36724	22.943	22.696	23.063	-0.24775					14	6	3	0	0	0	0.72792	1	8085	8085		11.495	3.3392	1	4947500	+		31309	13876	19731	19839	30144	30144					-0.012573895401374102
SQVEILQRV	9	Unmodified	_SQVEILQRV_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MSMS	HCT116MG_D190212_S1	1	536.3118896484375	2	536.31148	1070.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.972	1	41.972	41.472	42.472	0								0	0	0	0.5054	1	15818	15818		28.495	4.7047	1				31310	2568	19732	19840	30145	30145					0.07592816880332975
SQVEILQRV	9	Unmodified	_SQVEILQRV_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	HCT116MG_D190212_S2	2	536.31103515625	2	536.31148	1070.60841	0.54001	0.00028961	-0.33159	-0.00017783	0.20842	0.00011178	536.3109957197294	41.913	0.46756	41.844	41.601	42.068	-0.068199					14	7	3	0	0	0	0.0201	1	15830	15830		96.367	20.606	1	33309000			31311	2568	19732	19840	30146	30146					0.07592816880332975
SQVKPLFQFFV	11	Unmodified	_SQVKPLFQFFV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S1	1	670.3760375976562	2	670.374081	1338.73361	0.59798	0.00040087	2.1748	0.0014579	2.7728	0.0018588	670.3757516336423	19.521	0.20834	19.521	19.391	19.6	0					8	3	3	0	0	0	0.59037	1	6783	6783		36.506	12.716	1	7087100			31312	1517	19733	19841	30147	30147					0.07779109016678376
SQVPKPAP	8	Unmodified	_SQVPKPAP_					0	0	0		ENST00000526387.5_1_11:67177262-67177541:+|nuORF	ENST00000526387.5_1_11:67177262-67177541:+|nuORF	ENST00000526387.5_1_11:67177262-67177541:+|nuORF	MSMS	HCT116MG_D190212_S1	1	412.2366638183594	2	412.237253	822.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.504	1	62.504	62.004	63.004	0								0	0	0	0.8837	1	24136	24136		0.69038	0	1				31313	8588	19734	19842	30148	30148					0.041621306972729144
SQWDSPMRV	9	Oxidation (M)	_SQWDSPM(Oxidation (M))RV_		SQWDSPM(1)RV		SQWDSPM(89)RV	0	0	1		VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	561.2562866210938	2	561.255848	1120.49714	0.51448	0.00028876	0.093684	5.258E-05	0.60816	0.00034134	561.2560437701186	31.445	0.31214	31.445	31.232	31.544	0					9	5	2	0	0	0	0.026999	1	11589	11589		89.401	52.895	1	5259800			31314	3192	19735	19843	30149	30149		74			-0.05828565819274445
SQWDSPMRV	9	Unmodified	_SQWDSPMRV_					0	0	0		VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	553.2584838867188	2	553.258391	1104.50223	0.62303	0.0003447	-0.18883	-0.00010447	0.4342	0.00024022	553.2582502249782	41.883	0.36482	41.883	41.654	42.019	0					14	6	3	0	0	0	0.0038512	1	15788	15788		152.89	100.62	1	30337000			31315	3192	19735	19844	30150	30150					-0.045842619566428766
SQWDSPMRV	9	Unmodified	_SQWDSPMRV_					0	0	0		VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant;VPS13B|p.S3988Lfs*4|1|0.55|ENSG00000132549|chr8:99875552-99875553|-/C|frameshift_variant;VPS13B|p.S3988Pfs*25|1|0.11|ENSG00000132549|chr8:99875553-99875553|C/-|frameshift_variant;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	VPS13B|p.M3156Ifs*2|1|0.07|ENSG00000132549|chr8:99832427-99832428|-/TA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2586059570312	2	553.258391	1104.50223	0.43675	0.00024163	-0.14695	-8.13E-05	0.2898	0.00016034	553.2583891020693	41.803	0.467	41.735	41.549	42.016	-0.068199					21	8	4	0	0	0	0.0034469	1	15807	15807		179.17	126.91	1	125970000			31316	3192	19735	19844	30151	30151					-0.045842619566428766
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	HCT116MG_D190212_S1	1	547.3045654296875	2	547.303655	1092.59276	0.76233	0.00041723	0.2984	0.00016332	1.0607	0.00058054	547.3039508543357	28.825	0.1567	28.825	28.746	28.903	0					4	2	2	0	0	0	0.30874	1	10543	10543		29.841	0	1	5198400			31317	1877	19736	19845	30152	30152					0.050165303632638825
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	547.303655	1092.59276	0.5448	0.00029817	-0.24415	-0.00013362	0.30065	0.00016455	547.3032729088515	29.255	0.20361	28.939	28.812	29.015	-0.31613	0.057193	-0.00040668	NaN	29.841	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11167000			31318	1877	19736	19845							0.050165303632638825
SRAGKAGP	8	Unmodified	_SRAGKAGP_					0	0	0			REV__COL1A1|p.G866S|1|0.23|ENSG00000108821|chr17:50189876-50189876|C/T|missense_variant	REV__COL1A1|p.G866S|1|0.23|ENSG00000108821|chr17:50189876-50189876|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	372.2130126953125	2	372.211569	742.408586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.776	1	26.627	26.127	27.127	-0.14924								0	0	0	0.8837	1	9621	9621		4.3292	1.44	1		+		31319	10228	19737	19846	30153	30153					0.027078067232309877
SRALVPAPRTL	11	Unmodified	_SRALVPAPRTL_					0	0	0		ENST00000509647.1_1_4:187647713-187647806:-|nuORF	ENST00000509647.1_1_4:187647713-187647806:-|nuORF	ENST00000509647.1_1_4:187647713-187647806:-|nuORF	MSMS	HCT116MG_D190212_S4	4	394.2071838378906	3	394.24354	1179.70879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.046	1	58.763	58.263	59.263	-0.28305								0	0	0	0.95581	1	22210	22210		1.3296	0.11481	1				31320	8490	19738	19847	30154	30154					0.12612473933995716
SRAPPKAL	8	Unmodified	_SRAPPKAL_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MSMS	HCT116MG_D190212_S1	1	420.251220703125	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.214	1	53.214	52.714	53.714	0								0	0	0	0.8837	1	20374	20374		5.2307	0	1		+		31321	14028	19739	19848	30155	30155					0.07677525825499742
SRAPPKAL	8	Unmodified	_SRAPPKAL_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MSMS	HCT116MG_D190212_S1	1	420.2588806152344	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.309	1	53.309	52.809	53.809	0								0	0	0	0.8837	1	20413	20413		5.2307	0	1		+		31322	14028	19739	19848	30156	30156					0.07677525825499742
SRAPVFLQF	9	Unmodified	_SRAPVFLQF_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7747802734375	2	532.798009	1063.58147	0.46508	0.00024779	-0.32771	-0.00017461	0.13736	7.3186E-05	532.7978009720478	55.385	0.20358	55.199	55.072	55.276	-0.18565					8	3	3	0	0	0	0.21258	2	21362	21362;21374		39.95	23.801	1	134560000			31323	5651	19740	19849	30157;30158	30157					0.052217530597772566
SRAPVFLQF	9	Unmodified	_SRAPVFLQF_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-MATCH	HCT116MG_D190212_S1	1		2	532.798009	1063.58147	0.42147	0.00022456	-0.090814	-4.8386E-05	0.33065	0.00017617	532.797997233162	55.222	0.15212	55.222	55.095	55.247	0	0.011502	0.00017444	NaN	39.95	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29597000			31324	5651	19740	19849							0.052217530597772566
SRDKFIREL	9	Unmodified	_SRDKFIREL_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	HCT116MG_D190212_S1	1	388.5557556152344	3	388.555895	1162.64586	-0.0019131	-7.4334E-07	-0.029486	-1.1457E-05	-0.031399	-1.22E-05	388.5557445069695	31.414	0.15604	31.414	31.336	31.492	0					4	2	2	0	0	0	0.11491	1	11583	11583		55.249	23.613	1	7140500			31325	6089	19741	19850	30159	30159					0.071039081459503
SRDTSTIGQ	9	Unmodified	_SRDTSTIGQ_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	HCT116MG_D190212_S4	4	964.9697875976562	1	964.469414	963.462138	0.60113	0.00057978	-1.3449	-0.0012971	-0.74375	-0.00071733	964.4688640828663	40.169	0.2084	39.79	39.732	39.941	-0.37936					8	4	2	0	0	0	0.24195	1	14787	14787		9.3831	1.2276	1	1927100			31326	5311	19742	19851	30160	30160					-0.021054853555710906
SREGRPIWQL	10	Unmodified	_SREGRPIWQL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR;ENST00000504466.1_1_5:74645886-74647190:+|nuORF	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S1	1	621.8433837890625	2	621.341104	1240.66765	0.72659	0.00045146	-0.30012	-0.00018648	0.42646	0.00026498	621.3408472199093	46.306	0.41299	46.306	46.079	46.492	0					18	7	3	0	0	0	2.5774E-06	1	17536	17536		228.37	176.74	1	106250000			31327	2370	19743	19852	30161	30161					0.056947128945239456
SREGRPIWQL	10	Unmodified	_SREGRPIWQL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR;ENST00000504466.1_1_5:74645886-74647190:+|nuORF	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S1	1	415.22393798828125	3	414.563161	1240.66765	0.08878	3.6805E-05	-0.16414	-6.8047E-05	-0.075362	-3.1242E-05	414.56311995854617	46.311	0.36163	46.311	46.079	46.44	0					15	6	3	0	0	0	0.24435	2	17544	17544;17562		55.467	55.467	1	55629000			31328	2370	19743	19852	30162;30163	30162					0.056947128945239456
SREGRPIWQL	10	Unmodified	_SREGRPIWQL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR;ENST00000504466.1_1_5:74645886-74647190:+|nuORF	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S2	2	621.3414306640625	2	621.341104	1240.66765	0.43764	0.00027193	-0.34161	-0.00021226	0.096032	5.9668E-05	621.3408518761668	46.246	0.56646	46.144	45.812	46.378	-0.1014					33	10	4	0	0	0	0.0018639	1	17573	17573		200.32	148.69	1	313970000			31329	2370	19743	19852	30164	30164					0.056947128945239456
SREGRPIWQL	10	Unmodified	_SREGRPIWQL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR;ENST00000504466.1_1_5:74645886-74647190:+|nuORF	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S2	2	414.5628662109375	3	414.563161	1240.66765	-0.095194	-3.9464E-05	-0.51095	-0.00021182	-0.60614	-0.00025128	414.5629242714611	46.253	0.56646	46.15	45.811	46.377	-0.10242					30	10	4	0	0	0	0.24435	1	17591	17591		55.467	32.451	1	193300000			31330	2370	19743	19852	30165	30165					0.056947128945239456
SRFLFSNP	8	Unmodified	_SRFLFSNP_					0	0	0			REV__ENSG00000077454|ENST00000310300|LRCH4	REV__ENSG00000077454|ENST00000310300|LRCH4	MULTI-SECPEP	HCT116MG_D190212_S2	2	483.75225830078125	2	484.253434	966.492316	0.48668	0.00023568	0.26954	0.00013053	0.75622	0.0003662	484.2535105363904	47.909	0.25727	47.776	47.584	47.841	-0.13281					7	4	2	0	0	0	0.30313	1	18283	18283		14.838	6.245	1	39547000	+		31331	10829	19744	19853	30166	30166					0.0077291810027873
SRFPIRPLDA	10	Unmodified	_SRFPIRPLDA_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MSMS	HCT116MG_D190212_S4	4	391.22479248046875	3	391.224257	1170.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.325	1	39.947	39.447	40.447	-0.37828								0	0	0	0.95648	1	14790	14790		1.5923	0.11038	1		+		31332	13442	19745	19854	30167	30167					0.07244212008549766
SRFSNVYHL	9	Unmodified	_SRFSNVYHL_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	HCT116MG_D190212_S1	1	562.5939331054688	2	561.788173	1121.56179	0.64056	0.00035986	-1.0783	-0.00060578	-0.43775	-0.00024592	561.7873846509455	37.275	0.20199	37.275	37.146	37.348	0					8	3	3	0	0	0	0.17423	2	13918	13918;13946		43.982	13.356	1	20778000			31333	1093	19746	19855	30168;30169	30168					0.005873770490552488
SRFSNVYHL	9	Unmodified	_SRFSNVYHL_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	HCT116MG_D190212_S2	2	561.7880249023438	2	561.788173	1121.56179	0.26201	0.00014719	-0.23891	-0.00013421	0.0231	1.2977E-05	561.7880665972473	37.309	0.20639	37.206	37.078	37.284	-0.10318					6	3	2	0	0	0	0.31596	1	13989	13989		29.082	15.176	1	47296000			31334	1093	19746	19855	30170	30170					0.005873770490552488
SRGAGAGG	8	Unmodified	_SRGAGAGG_					0	0	0			REV__ENST00000314412.6_1_9:139926568-139926664:-|nuORF	REV__ENST00000314412.6_1_9:139926568-139926664:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	631.942626953125	1	632.311063	631.303787	0.59842	0.00037839	1.7369	0.0010983	2.3354	0.0014767	632.3119366480657	48.948	0.31052	48.948	48.768	49.079	0					7	5	2	0	0	0	0.87685	1	18637	18637		0.6015	0	1	18143000	+		31335	14854	19747	19856	30171	30171					-0.026613147533225856
SRGASLSVKLP	11	Unmodified	_SRGASLSVKLP_					0	0	0			REV__ENSG00000130997|ENST00000511885|POLN	REV__ENSG00000130997|ENST00000511885|POLN	MSMS	HCT116MG_D190212_S1	1	372.2225036621094	3	372.224146	1113.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.58	1	31.58	31.08	32.08	0								0	0	0	0.95705	1	11624	11624		2.6312	0.13275	1		+		31336	11950	19748	19857	30172	30172					0.09832792288716519
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1071.510009765625	1	1071.51055	1070.50327	0.38576	0.00041334	-0.84678	-0.00090733	-0.46102	-0.00049399	1071.5093127558475	41.234	0.3075	41.165	41.037	41.345	-0.068199					13	5	3	0	0	0	0.032914	1	15576	15576		83.429	37.729	1	113250000			31337	5751	19749	19858	30173	30173					-0.029157243160852886
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	536.25830078125	2	536.258914	1070.50327	0.25075	0.00013446	-0.17556	-9.4145E-05	0.075187	4.032E-05	536.2588211480147	41.543	0.73274	41.24	41.048	41.781	-0.30257					68	25	4	0	0	0	0.0062667	1	15427	15427		126.57	41.294	1	311680000			31338	5751	19749	19858	30174	30174					-0.029157243160852886
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	536.258914	1070.50327	0.45398	0.00024345	-0.34533	-0.00018519	0.10865	5.8265E-05	536.2586927740241	41.641	0.31974	41.265	41.162	41.482	-0.37637	0.012256	-5.5369E-05	NaN	126.57	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82500000			31339	5751	19749	19858							-0.029157243160852886
SRGGANQG	8	Unmodified	_SRGGANQG_					0	0	0			REV__ENST00000377069.8_1_12:122017981-122018077:-|nuORF	REV__ENST00000377069.8_1_12:122017981-122018077:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	746.3548583984375	1	746.353991	745.346714	0.87377	0.00065214	0.43245	0.00032276	1.3062	0.0009749	746.3542639097801	31.622	0.72969	31.622	31.336	32.066	0					23	13	3	0	0	0	0.87576	1	11598	11598		0.79363	0	1	55109000	+		31340	15232	19750	19859	30175	30175					-0.03614544695903987
SRGGANQG	8	Unmodified	_SRGGANQG_					0	0	0			REV__ENST00000377069.8_1_12:122017981-122018077:-|nuORF	REV__ENST00000377069.8_1_12:122017981-122018077:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	746.3547973632812	1	746.353991	745.346714	0.74476	0.00055586	0.56167	0.00041921	1.3064	0.00097506	746.3542297719887	32.043	1.4538	31.668	31.018	32.472	-0.37529					59	27	3	0	0	0	0.87576	1	11697	11697		0.79363	0	1	125280000	+		31341	15232	19750	19859	30176	30176					-0.03614544695903987
SRGKKGKP	8	Unmodified	_SRGKKGKP_					0	0	0			REV__ENSG00000240204|ENST00000462322|SMKR1	REV__ENSG00000240204|ENST00000462322|SMKR1	MSMS	HCT116MG_D190212_S4	4	429.2693786621094	2	429.269419	856.524284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.466	1	37.082	36.582	37.582	-0.3839								0	0	0	0.8837	1	13750	13750		5.2307	0	1		+		31342	14349	19751	19860	30177	30177					0.0902833057408543
SRGKKKKKK	9	Unmodified	_SRGKKKKKK_					0	0	0		SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant;ENSG00000139767|ENST00000267260|SRRM4	SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant	SRRM4|p.N409Kfs*17|1|0.25|ENSG00000139767|chr12:119151159-119151160|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	363.0220031738281	3	363.252258	1086.73495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1406	1	9.1406	8.6406	9.6406	0								0	0	0	0.77025	1	2767	2767		0	0	1				31343	3645	19752	19861	30178	30178					0.19504787896130438
SRGMRQNSL	9	Unmodified	_SRGMRQNSL_					0	0	0			REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	350.182373046875	3	350.182063	1047.52436	-0.060568	-2.121E-05	0.32885	0.00011516	0.26829	9.3949E-05	350.1821803696094	34.194	0.46848	33.899	33.663	34.131	-0.2942					14	8	3	0	0	0	0.60654	1	12587	12587		10.8	10.8	1	33405000	+		31344	12224	19753	19862	30179	30179					0.0024996251177071827
SRGPGDGG	8	Unmodified	_SRGPGDGG_					0	0	0		nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF	nc|ENSG00000063046|P23588-2|EIF4B	nc|ENSG00000063046|P23588-2|EIF4B	MULTI-MSMS	HCT116MG_D190212_S1	1	702.3170776367188	1	702.316542	701.309266	0.82617	0.00058024	0.59581	0.00041845	1.422	0.00099869	702.3167142925915	34.727	1.087	34.727	34.076	35.163	0					52	20	3	0	0	0	0.87685	1	12980	12980		0.6015	0	1	411060000			31345	1126	19754	19863	30180	30180					-0.053336359615173023
SRGPGTSFEF	10	Unmodified	_SRGPGTSFEF_					0	0	0		ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	MULTI-MSMS	HCT116MG_D190212_S2	2	542.7564697265625	2	542.756538	1083.49852	0.66364	0.0003602	-0.17141	-9.3032E-05	0.49223	0.00026716	542.7563237885513	44.54	0.31355	44.455	44.274	44.588	-0.084797					9	5	2	0	0	0	0.54524	1	16946	16946		32.037	5.1538	1	25526000			31346	2513	19755	19864	30181	30181					-0.0398860845884883
SRGPGTSFEF	10	Unmodified	_SRGPGTSFEF_					0	0	0		ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	ENSG00000116288|ENST00000338639|PARK7	MULTI-MATCH	HCT116MG_D190212_S1	1		2	542.756538	1083.49852	0.42273	0.00022944	-0.31227	-0.00016948	0.11046	5.9953E-05	542.7562442385346	44.595	0.31573	44.595	44.357	44.673	0	0.069788	-0.00010752	NaN	32.037	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10913000			31347	2513	19755	19864							-0.0398860845884883
SRGRLLHQL	9	Unmodified	_SRGRLLHQL_					0	0	0		ENST00000560555.1_1_15:101420112-101432306:+|nuORF;ALDH1A3|p.I132Hfs*8|1|0.29|ENSG00000184254|chr15:100892550-100892551|-/T|frameshift_variant;ALDH1A3|p.K284Rfs*83|4|0.34|ENSG00000184254|chr15:100898145-100898145|G/-|frameshift_variant;ENSG00000184254|ENST00000329841|ALDH1A3	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	360.5523986816406	3	360.552597	1078.63596	0.0097644	3.5206E-06	-0.23575	-8.4999E-05	-0.22598	-8.1478E-05	360.5524991833792	26.267	0.20868	26.267	26.136	26.345	0					6	3	2	0	0	0	0.17423	1	9488	9488		43.982	2.1422	1	12710000			31348	93	19756	19865	30182	30182					0.0997876493122476
SRGRLLHQL	9	Unmodified	_SRGRLLHQL_					0	0	0		ENST00000560555.1_1_15:101420112-101432306:+|nuORF;ALDH1A3|p.I132Hfs*8|1|0.29|ENSG00000184254|chr15:100892550-100892551|-/T|frameshift_variant;ALDH1A3|p.K284Rfs*83|4|0.34|ENSG00000184254|chr15:100898145-100898145|G/-|frameshift_variant;ENSG00000184254|ENST00000329841|ALDH1A3	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	540.3252563476562	2	540.325257	1078.63596	0.41974	0.0002268	0.07403	4E-05	0.49377	0.0002668	540.325269171744	26.775	0.26134	26.422	26.293	26.554	-0.35254					9	4	3	0	0	0	0.035298	1	9703	9703		89.401	29.327	1	81896000			31349	93	19756	19865	30183	30183					0.0997876493122476
SRGRLLHQL	9	Unmodified	_SRGRLLHQL_					0	0	0		ENST00000560555.1_1_15:101420112-101432306:+|nuORF;ALDH1A3|p.I132Hfs*8|1|0.29|ENSG00000184254|chr15:100892550-100892551|-/T|frameshift_variant;ALDH1A3|p.K284Rfs*83|4|0.34|ENSG00000184254|chr15:100898145-100898145|G/-|frameshift_variant;ENSG00000184254|ENST00000329841|ALDH1A3	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	360.5523986816406	3	360.552597	1078.63596	-0.2405	-8.6711E-05	0.22255	8.0242E-05	-0.017944	-6.4698E-06	360.55262966341365	26.775	0.26134	26.422	26.293	26.554	-0.35254					8	4	3	0	0	0	0.11498	1	9704	9704		55.235	5.3016	1	109330000			31350	93	19756	19865	30184	30184					0.0997876493122476
SRGRLLHQL	9	Unmodified	_SRGRLLHQL_					0	0	0		ENST00000560555.1_1_15:101420112-101432306:+|nuORF;ALDH1A3|p.I132Hfs*8|1|0.29|ENSG00000184254|chr15:100892550-100892551|-/T|frameshift_variant;ALDH1A3|p.K284Rfs*83|4|0.34|ENSG00000184254|chr15:100898145-100898145|G/-|frameshift_variant;ENSG00000184254|ENST00000329841|ALDH1A3	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	540.325257	1078.63596	0.6002	0.0003243	-0.18487	-9.989E-05	0.41533	0.00022441	540.3249269819438	26.267	0.20868	26.267	26.136	26.345	0	-0.077961	-0.00025316	NaN	89.401	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7565900			31351	93	19756	19865							0.0997876493122476
SRIHRREHKRK	11	Unmodified	_SRIHRREHKRK_					0	0	0			REV__ENSG00000130940|ENST00000377022|CASZ1	REV__ENSG00000130940|ENST00000377022|CASZ1	MULTI-MSMS	HCT116MG_D190212_S1	1	503.3053894042969	3	501.634424	1501.88144	0.48601	0.0002438	-0.0011947	-5.9928E-07	0.48482	0.0002432	501.6343759695356	54.26	5.1376	54.26	51.704	56.841	0					249	99	6	0	0	0	0.74191	1	20536	20536		0	0	1	998670000	+		31352	11946	19757	19866	30185	30185					0.15057858113891598
SRIIIAKSDS	10	Unmodified	_SRIIIAKSDS_					0	0	0		ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.3945922851562	2	545.316763	1088.61897	0.59575	0.00032487	-0.25808	-0.00014073	0.33767	0.00018414	545.3164683358575	48.705	1.4181	48.561	47.982	49.4	-0.1437					44	27	2	0	0	0	0.85886	1	18568	18568		7.1017	1.3699	1	73584000			31353	62	19758	19867	30186	30186					0.07820799534761136
SRIQRWRRYYL	11	Unmodified	_SRIQRWRRYYL_					0	0	0		ENST00000372070.7_1_1:46016515-46016749:+|nuORF	ENST00000372070.7_1_1:46016515-46016749:+|nuORF	ENST00000372070.7_1_1:46016515-46016749:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	798.9452514648438	2	798.947133	1595.87971	0.78525	0.00062738	-2.1365	-0.0017069	-1.3512	-0.0010796	798.9453725204971	39.632	0.35719	39.554	39.428	39.785	-0.077835					13	6	3	0	0	0	0.74191	1	14945	14945		1.3295	0.13619	1	73731000			31354	7452	19759	19868	30187	30187					0.1056080430532802
SRIQRWRRYYL	11	Unmodified	_SRIQRWRRYYL_					0	0	0		ENST00000372070.7_1_1:46016515-46016749:+|nuORF	ENST00000372070.7_1_1:46016515-46016749:+|nuORF	ENST00000372070.7_1_1:46016515-46016749:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	798.947133	1595.87971	0.62144	0.0004965	-2.7101	-0.0021652	-2.0887	-0.0016687	799.4468337113584	39.978	0.10223	39.676	39.645	39.747	-0.30137	0.061395	-0.00066769	NaN	1.3295	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4861000			31355	7452	19759	19868							0.1056080430532802
SRISLILTLW	10	Unmodified	_SRISLILTLW_					0	0	0		ENST00000496524.5_1_2:110902031-110920682:-|nuORF;nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1;nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1	ENST00000496524.5_1_2:110902031-110920682:-|nuORF	ENST00000496524.5_1_2:110902031-110920682:-|nuORF	MSMS	HCT116MG_D190212_S1	1	600.8914794921875	2	601.368798	1200.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.2	1	49.2	48.7	49.7	0								0	0	0	0.93854	1	18741	18741		7.2892	0.56607	1				31356	3850	19760	19869	30188	30188					0.130711263622743
SRKRRYVRRKQ	11	Unmodified	_SRKRRYVRRKQ_					0	0	0			REV__ENSG00000119403|ENST00000373896|PHF19	REV__ENSG00000119403|ENST00000373896|PHF19	MULTI-MSMS	HCT116MG_D190212_S2	2	766.9719848632812	2	766.971474	1531.92839	1.0628	0.0008151	-0.1068	-8.1914E-05	0.95595	0.00073319	766.9712098756914	56.974	0.36425	56.795	56.635	56.999	-0.17904					13	6	3	0	0	0	0.74191	1	22019	22019		0	0	1	8663500	+		31357	11655	19761	19870	30189	30189					0.1837071766506142
SRKSKVRS	8	Unmodified	_SRKSKVRS_					0	0	0		ENST00000312584.3_1_8:23002006-23002045:-|nuORF	ENST00000312584.3_1_8:23002006-23002045:-|nuORF	ENST00000312584.3_1_8:23002006-23002045:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	474.2911071777344	2	474.290882	946.567212	0.10356	4.9118E-05	0.043366	2.0568E-05	0.14693	6.9686E-05	474.2908278167152	44.223	2.1871	44.223	43.16	45.347	0					65	41	2	0	0	0	0.33249	1	16393	16393		4.3292	1.44	1	189580000			31358	7067	19762	19871	30190	30190					0.09179100631524761
SRKWRLLR	8	Unmodified	_SRKWRLLR_					0	0	0		ENST00000309117.10_1_21:38639566-38639725:-|nuORF	ENST00000309117.10_1_21:38639566-38639725:-|nuORF	ENST00000309117.10_1_21:38639566-38639725:-|nuORF	MSMS	HCT116MG_D190212_S3	3	372.23785400390625	3	372.23672	1113.68833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.675	1	58.409	57.909	58.909	-0.26687								0	0	0	0.8837	1	22326	22326		0.35063	0	1				31359	7040	19763	19872	30191	30191					0.13603348064839338
SRLSQINVA	9	Unmodified	_SRLSQINVA_					0	0	0			REV__nc|ENSG00000149516|Q96HJ5-3|MS4A3	REV__nc|ENSG00000149516|Q96HJ5-3|MS4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	494.28302001953125	2	494.282723	986.550893	0.19048	9.4151E-05	0.45589	0.00022534	0.64637	0.00031949	494.2828595650034	19.94	0.20839	19.988	19.895	20.103	0.048107					5	3	2	0	0	0	0.34272	1	6897	6897		26.268	2.2476	1	2050100	+		31360	12566	19764	19873	30192	30192					0.05707974674749039
SRNAYMLVY	9	Unmodified	_SRNAYMLVY_					0	0	0		nc|ENSG00000090686|Q86UV5-7|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;USP48|p.G702Wfs*5|1|0.12|ENSG00000090686|chr1:21706574-21706575|-/A|frameshift_variant;nc|ENSG00000090686|Q86UV5-2|USP48;USP48|p.L982Ffs*9|1|0.08|ENSG00000090686|chr1:21690037-21690038|-/GG|frameshift_variant;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-7|USP48	MULTI-MSMS	HCT116MG_D190212_S2	2	558.7794799804688	2	558.778959	1115.54336	0.35788	0.00019998	-0.22677	-0.00012671	0.13111	7.3264E-05	558.7790833199358	46.152	0.36055	46.051	45.863	46.223	-0.1014					18	6	4	0	0	0	0.17622	1	17578	17578		43.772	13.136	1	57068000			31361	1545	19765	19874	30193	30193					-0.009785009171764614
SRNIRDRR	8	Unmodified	_SRNIRDRR_					0	0	0			REV__nc|ENSG00000179111|Q9BYE0|HES7	REV__nc|ENSG00000179111|Q9BYE0|HES7	MSMS	HCT116MG_D190212_S4	4	358.20703125	3	358.2076	1071.60097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.406	1	31.036	30.536	31.536	-0.37026								0	0	0	0.8837	1	11397	11397		1.4819	0	1		+		31362	13626	19766	19875	30194	30194					0.06803522123254879
SRNSNTVVF	9	Unmodified	_SRNSNTVVF_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2646484375	2	512.26453	1022.51451	0.28269	0.00014481	0.20029	0.0001026	0.48299	0.00024742	512.2643694650469	36.465	0.20974	36.465	36.365	36.574	0					8	3	3	0	0	0	0.34272	1	13618	13618		26.268	26.268	1	6120900			31363	1579	19767	19876	30195	30195					0.004150977780454923
SRNSNTVVF	9	Unmodified	_SRNSNTVVF_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2647094726562	2	512.26453	1022.51451	0.3629	0.0001859	0.13519	6.9255E-05	0.49809	0.00025515	512.2643616705266	36.588	0.36248	36.473	36.239	36.602	-0.11478					8	6	2	0	0	0	0.43843	1	13714	13714		20.415	5.5763	1	9489500			31364	1579	19767	19876	30196	30196					0.004150977780454923
SRNSNTVVF	9	Unmodified	_SRNSNTVVF_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	512.26453	1022.51451	0.28269	0.00014481	0.20029	0.0001026	0.48299	0.00024742	512.2643694650469	36.465	0.20974	36.465	36.365	36.574	0	-0.0037539	2.8627E-05	NaN	26.268	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6120900			31365	1579	19767	19876							0.004150977780454923
SRNSNTVVF	9	Unmodified	_SRNSNTVVF_					0	0	0		nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4	nc|ENSG00000092203|O94842-2|TOX4	nc|ENSG00000092203|O94842-2|TOX4	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	512.26453	1022.51451	0.3629	0.0001859	0.13519	6.9255E-05	0.49809	0.00025515	512.2643616705266	36.588	0.36248	36.473	36.239	36.602	-0.11478	0.0037539	-3.807E-05	NaN	26.268	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9489500			31366	1579	19767	19876							0.004150977780454923
SRPKPEAPMA	10	Unmodified	_SRPKPEAPMA_					0	0	0		nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2;nc|ENSG00000164877|Q8IY33-4|MICALL2;ENST00000472100.5_1_7:1481822-1498962:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2	nc|ENSG00000164877|Q8IY33-5|MICALL2	nc|ENSG00000164877|Q8IY33-5|MICALL2	MULTI-MSMS	HCT116MG_D190212_S3	3	361.858642578125	3	361.858698	1082.55426	-0.16832	-6.0908E-05	-0.27408	-9.9177E-05	-0.4424	-0.00016009	361.85869726620507	22.969	0.30633	22.95	22.797	23.104	-0.018869					9	5	2	0	0	0	0.85886	1	8106	8106		4.1166	0.7609	1	3057600			31367	4727	19768	19877	30197	30197					0.016289014571157168
SRPVRNRKVV	10	Unmodified	_SRPVRNRKVV_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	HCT116MG_D190212_S1	1	404.254150390625	3	404.254551	1209.74182	0.041501	1.6777E-05	-1.0859	-0.00043899	-1.0444	-0.00042222	404.25397600237716	53.59	0.25763	53.59	53.462	53.72	0					6	4	2	0	0	0	0.88715	1	20560	20560		1.7423	0.54893	1	21767000			31368	1216	19769	19878	30198	30198					0.14534100776700143
SRQHHDYRHRR	11	Unmodified	_SRQHHDYRHRR_					0	0	0			REV__ENST00000551131.1_1_12:53693918-53696986:+|nuORF	REV__ENST00000551131.1_1_12:53693918-53696986:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	774.39453125	2	774.393587	1546.77262	1.0469	0.00081072	0.58834	0.00045561	1.6352	0.0012663	774.8952972570476	40.304	0.57094	40.231	39.842	40.413	-0.072838					25	10	4	0	0	0	0.74191	1	15119	15119		2.9952	1.6657	1	53488000	+		31369	12269	19770	19879	30199	30199					0.021106471436269203
SRQHHDYRHRR	11	Unmodified	_SRQHHDYRHRR_					0	0	0			REV__ENST00000551131.1_1_12:53693918-53696986:+|nuORF	REV__ENST00000551131.1_1_12:53693918-53696986:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	774.393587	1546.77262	0.60515	0.00046862	0.85623	0.00066306	1.4614	0.0011317	774.3941047381112	40.493	0.80988	40.192	39.666	40.476	-0.30161	-0.015295	0.00030422	NaN	2.9952	46	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47045000	+		31370	12269	19770	19879							0.021106471436269203
SRQHHDYRHRR	11	Unmodified	_SRQHHDYRHRR_					0	0	0			REV__ENST00000551131.1_1_12:53693918-53696986:+|nuORF	REV__ENST00000551131.1_1_12:53693918-53696986:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	774.393587	1546.77262	0.90401	0.00070006	0.55603	0.00043059	1.46	0.0011306	774.3939524243983	40.576	0.85273	40.198	39.669	40.522	-0.37828	-0.0092024	-0.00016072	NaN	2.9952	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40651000	+		31371	12269	19770	19879							0.021106471436269203
SRQVKAELA	9	Unmodified	_SRQVKAELA_					0	0	0		nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1;SCYL1|p.R776Q|1|0.07|ENSG00000142186|chr11:65538466-65538466|G/A|missense_variant	nc|ENSG00000142186|Q96KG9-3|SCYL1	nc|ENSG00000142186|Q96KG9-3|SCYL1	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2904968261719	2	501.290548	1000.56654	0.27426	0.00013749	0.11315	5.6721E-05	0.38741	0.00019421	501.29058861036145	44.542	0.58122	44.542	44.195	44.777	0					17	10	2	0	0	0	0.60612	1	16817	16817		10.824	0	1	12770000			31372	3747	19771	19880	30200	30200					0.06628261191804086
SRRPVIMSIP	10	Unmodified	_SRRPVIMSIP_					0	0	0			REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B	REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B	MSMS	HCT116MG_D190212_S3	3	578.7536010742188	2	578.336975	1154.6594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.985	1	36.684	36.184	37.184	-0.30113								0	0	0	0.95351	1	13685	13685		3.9444	0	1		+		31373	11199	19772	19881	30201	30201					0.08825442653551363
SRRRKKRFRQE	11	Unmodified	_SRRRKKRFRQE_					0	0	0			REV__ENSG00000186854|ENST00000409520|TRABD2A	REV__ENSG00000186854|ENST00000409520|TRABD2A	MULTI-MSMS	HCT116MG_D190212_S1	1	516.6441650390625	3	516.309829	1545.90766	0.4936	0.00025485	-0.071662	-3.7E-05	0.42194	0.00021785	516.3097573367328	54.571	1.8868	54.571	53.822	55.709	0					182	36	7	0	0	0	0.74191	1	20680	20680		0.094841	0.021578	1	849800000	+		31374	13899	19773	19882	30202	30202					0.15654127285415598
SRRRKRKWRRR	11	Unmodified	_SRRRKRKWRRR_					0	0	0			REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF	REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	547.7797241210938	3	547.68048	1640.01961	0.5248	0.00028742	-0.58106	-0.00031824	-0.056261	-3.0813E-05	547.679835966209	56.169	0.5149	56.169	55.913	56.428	0					14	9	2	0	0	0	0.74191	1	21505	21505		0	0	1	11951000	+		31375	14621	19774	19883	30203	30203					0.22520026153028994
SRRRKRKWRRR	11	Unmodified	_SRRRKRKWRRR_					0	0	0			REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF	REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	547.68048	1640.01961	0.5248	0.00028742	-0.58106	-0.00031824	-0.056261	-3.0813E-05	547.679835966209	56.169	0.5149	56.169	55.913	56.428	0	0.017527	0.00012831	NaN	0	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11951000	+		31376	14621	19774	19883							0.22520026153028994
SRRRKRKWRRR	11	Unmodified	_SRRRKRKWRRR_					0	0	0			REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF	REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	547.68048	1640.01961	0.5431	0.00029744	-0.69602	-0.00038119	-0.15292	-8.375E-05	548.0143610313283	56.316	0.41492	56.134	55.949	56.364	-0.18261	-0.017527	-6.0565E-05	NaN	0	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12325000	+		31377	14621	19774	19883							0.22520026153028994
SRRRRRRHKRR	11	Unmodified	_SRRRRRRHKRR_					0	0	0			REV__ENST00000484699.1_1_1:155239218-155239476:-|nuORF	REV__ENST00000484699.1_1_1:155239218-155239476:-|nuORF	MSMS	HCT116MG_D190212_S1	1	810.3583984375	2	810.509955	1619.00536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.004	1	17.004	16.504	17.504	0								0	0	0	0.96208	1	5760	5760		0	0	1		+		31378	13542	19775	19884	30204	30204					0.22061373724727673
SRRRRRRQQRR	11	Unmodified	_SRRRRRRQQRR_					0	0	0		ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	MSMS	HCT116MG_D190212_S1	1	805.9916381835938	2	805.991595	1609.96864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.36	1	33.36	32.86	33.86	0								0	0	0	0.96208	1	12343	12343		0	0	1				31379	7678	19776	19885	30205	30205					0.18805077108186197
SRRRRRRRRRV	11	Unmodified	_SRRRRRRRRRV_					0	0	0		ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	ENST00000220562.8_1_8:28559112-28571023:+|nuORF	MSMS	HCT116MG_D190212_S1	1	805.5164794921875	2	805.51778	1609.02101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.698	1	61.698	61.198	62.198	0								0	0	0	0.96208	1	23811	23811		0	0	1				31380	6751	19777	19886	30206	30206					0.24085660241780715
SRRTRRLL	8	Unmodified	_SRRTRRLL_					0	0	0		ENST00000525278.1_1_11:89177257-89224483:-|nuORF;nc|ENSG00000086991|Q9NPH5-5|NOX4;nc|ENSG00000086991|Q9NPH5-2|NOX4;nc|ENSG00000086991|Q9NPH5-9|NOX4;nc|ENSG00000086991|Q9NPH5-6|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;ENSG00000086991|ENST00000263317|NOX4	ENST00000525278.1_1_11:89177257-89224483:-|nuORF	ENST00000525278.1_1_11:89177257-89224483:-|nuORF	MSMS	HCT116MG_D190212_S1	1	353.2281494140625	3	353.228224	1056.66284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.675	1	59.675	59.175	60.175	0								0	0	0	0.8837	1	22999	22999		0	0	1				31381	1477	19778	19887	30207	30207					0.13677873542428642
SRSARSLVVVM	11	Unmodified	_SRSARSLVVVM_					0	0	0			REV__nc|ENSG00000072778|P49748-2|ACADVL	REV__nc|ENSG00000072778|P49748-2|ACADVL	MSMS	HCT116MG_D190212_S4	4	402.2335510253906	3	402.232535	1203.67578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.765	1	27.443	26.943	27.943	-0.32157								0	0	0	0.95705	1	9954	9954		2.6312	1.039	1		+		31382	10780	19779	19888	30208	30208					0.08208523819621405
SRSAVLQLQ	9	Unmodified	_SRSAVLQLQ_					0	0	0			REV__nc|ENSG00000136895|Q5VVW2-5|GARNL3	REV__nc|ENSG00000136895|Q5VVW2-5|GARNL3	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2906799316406	2	501.290548	1000.56654	0.48376	0.00024251	-0.016414	-8.2281E-06	0.46735	0.00023428	501.2904384609821	46.257	1.87	46.257	45.295	47.165	0					85	35	3	0	0	0	0.61923	1	17316	17316		10.074	0	1	90691000	+		31383	12149	19780	19889	30209	30209					0.06628261191815454
SRSGGGGG	8	Unmodified	_SRSGGGGG_					0	0	0		CON__Q5XQN5;CON__P13647;ENSG00000186081|ENST00000252242|KRT5;CON__Q922U2;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;CON__P02535-1;CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__Q5XQN5;CON__P35527	CON__P35527	MULTI-MSMS	HCT116MG_D190212_S2	2	634.82861328125	1	634.290328	633.283051	0.52447	0.00033267	3.0003	0.0019031	3.5248	0.0022358	634.2922342113853	35.035	0.46576	34.877	34.657	35.123	-0.15834					12	8	2	0	0	0	0.87685	1	13071	13071		0.6015	0	1	12486000		+	31384	564;579	19781	19890	30210	30210					-0.048259051329750946
SRSGPKEHGP	10	Unmodified	_SRSGPKEHGP_					0	0	0		MYO3A|p.S1555G|1|0.21|ENSG00000095777|chr10:26203040-26203040|A/G|missense_variant	MYO3A|p.S1555G|1|0.21|ENSG00000095777|chr10:26203040-26203040|A/G|missense_variant	MYO3A|p.S1555G|1|0.21|ENSG00000095777|chr10:26203040-26203040|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.233642578125	2	526.267604	1050.52066	0.3572	0.00018798	0.026434	1.3911E-05	0.38363	0.00020189	526.2678988445572	18.032	0.20872	17.676	17.545	17.754	-0.35647					5	3	2	0	0	0	0.77749	1	6187	6187		13.906	0.86358	1	6217900			31385	9353	19782	19891	30211	30211					-0.0025838399044459948
SRSKLDKTK	9	Unmodified	_SRSKLDKTK_					0	0	0			REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1062.626953125	1	1062.62658	1061.61931	0.59684	0.00063422	-0.28485	-0.00030269	0.31199	0.00033153	1062.625959773379	48.64	0.30871	48.64	48.408	48.717	0					8	5	2	0	0	0	0.74917	1	18527	18527		1.8442	0	1	21762000	+		31386	10096	19783	19892	30212	30212					0.0909621925461579
SRSKLDKTK	9	Unmodified	_SRSKLDKTK_					0	0	0			REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	531.8171997070312	2	531.81693	1061.61931	0.43984	0.00023391	0.36998	0.00019676	0.80982	0.00043067	531.8168269108547	48.101	2.8008	47.785	46.383	49.184	-0.31596					100	54	4	0	0	0	0.74917	1	18134	18134		1.8442	0	1	17585000	+		31387	10096	19783	19892	30213	30213					0.0909621925461579
SRSKLDKTK	9	Unmodified	_SRSKLDKTK_					0	0	0			REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	531.8170166015625	2	531.81693	1061.61931	0.45346	0.00024116	0.20615	0.00010963	0.65961	0.00035079	531.8168856930787	48.052	2.7036	47.683	46.694	49.397	-0.36907					172	73	4	0	0	0	0.74917	1	18212	18212		1.8442	1.8442	1	46123000	+		31388	10096	19783	19892	30214	30214					0.0909621925461579
SRSKLDKTK	9	Unmodified	_SRSKLDKTK_					0	0	0			REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	531.81693	1061.61931	0.43984	0.00023391	0.36998	0.00019676	0.80982	0.00043067	531.8168269108547	48.101	2.8008	47.785	46.383	49.184	-0.31596	0.05098	0.00011807	NaN	1.8442	100	54	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17585000	+		31389	10096	19783	19892							0.0909621925461579
SRSKLDKTK	9	Unmodified	_SRSKLDKTK_					0	0	0			REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	REV__CASP8AP2|p.K342Nfs*2|1|0.33|ENSG00000118412|chr6:89862730-89862730|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	531.81693	1061.61931	0.45346	0.00024116	0.20615	0.00010963	0.65961	0.00035079	531.8168856930787	48.052	2.7036	47.683	46.694	49.397	-0.36907	-0.05098	-5.618E-05	NaN	1.8442	172	73	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46123000	+		31390	10096	19783	19892							0.0909621925461579
SRSKRRHRTV	10	Unmodified	_SRSKRRHRTV_					0	0	0		ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	MULTI-MSMS	HCT116MG_D190212_S1	1	428.25714111328125	3	428.256954	1281.74903	0.047435	2.0314E-05	0.75012	0.00032125	0.79756	0.00034156	428.25712564635717	52.613	0.66889	52.613	52.073	52.742	0					29	12	3	0	0	0	0.88823	1	20113	20113		0.62683	0.21856	1	54890000			31391	5295	19784	19893	30215	30215					0.11942833377111128
SRSKRRHRTV	10	Unmodified	_SRSKRRHRTV_					0	0	0		ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	428.256954	1281.74903	0.047435	2.0314E-05	0.75012	0.00032125	0.79756	0.00034156	428.25712564635717	52.613	0.66889	52.613	52.073	52.742	0	0	0	NaN	0.62683	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54890000			31392	5295	19784	19893							0.11942833377111128
SRSLCQEMGE	10	Unmodified	_SRSLCQEMGE_					0	0	0		ENST00000372733.3_1_20:43955353-43955551:-|nuORF	ENST00000372733.3_1_20:43955353-43955551:-|nuORF	ENST00000372733.3_1_20:43955353-43955551:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	570.244384765625	2	570.244623	1138.47469	0.4866	0.00027748	-0.48797	-0.00027826	-0.0013624	-7.769E-07	570.2444196118203	24.542	0.26119	24.542	24.412	24.673	0					7	4	2	0	0	0	0.75066	1	8816	8816		16.149	2.2431	1	6085400			31393	7464	19785	19894	30216	30216					-0.08900533279165757
SRSLQLPR	8	Unmodified	_SRSLQLPR_					0	0	0		ENST00000401985.3_1_5:179221106-179223480:+|nuORF	ENST00000401985.3_1_5:179221106-179223480:+|nuORF	ENST00000401985.3_1_5:179221106-179223480:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	956.5634765625	1	956.563589	955.556313	0.30322	0.00029005	-0.21904	-0.00020952	0.084181	8.0524E-05	956.5632000651049	49.76	0.71498	49.596	49.432	50.147	-0.16369					24	13	2	0	0	0	0.8672	1	19041	19041		2.3027	0	1	91780000			31394	7698	19786	19895	30217	30217					0.0767569825721921
SRSLVLLTYFI	11	Unmodified	_SRSLVLLTYFI_					0	0	0			REV__ENST00000489450.1_1_1:76254988-76255843:+|nuORF	REV__ENST00000489450.1_1_1:76254988-76255843:+|nuORF	MSMS	HCT116MG_D190212_S1	1	656.3850708007812	2	656.387188	1310.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.063	1	57.063	56.563	57.563	0								0	0	0	0.9581	1	21951	21951		2.086	0.60411	1		+		31395	16023	19787	19896	30218	30218					0.11687378188184994
SRSPFTNS	8	Unmodified	_SRSPFTNS_					0	0	0			REV__LCP2|p.T454Nfs*15|1|0.35|ENSG00000043462|chr5:170250848-170250849|-/T|frameshift_variant	REV__LCP2|p.T454Nfs*15|1|0.35|ENSG00000043462|chr5:170250848-170250849|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	448.259033203125	2	448.217049	894.419545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.327	1	52.327	51.827	52.827	0								0	0	0	0.8837	1	20011	20011		2.3027	0	1		+		31396	10596	19788	19897	30219	30219					-0.03188835693129022
SRSPHKRKRN	10	Unmodified	_SRSPHKRKRN_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-MSMS	HCT116MG_D190212_S1	1	633.369873046875	2	633.368518	1264.72248	0.58837	0.00037266	0.7842	0.00049669	1.3726	0.00086935	633.3688958694942	49.778	0.67033	49.778	49.389	50.059	0					39	12	4	0	0	0	0.88823	1	18898	18898		1.4819	1.4819	1	75533000			31397	5021	19789	19898	30220	30220					0.10071144485800687
SRSPLAPLGLP	11	Unmodified	_SRSPLAPLGLP_					0	0	0			REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF	REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MSMS	HCT116MG_D190212_S4	4	554.3319091796875	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.526	1	47.156	46.656	47.656	-0.36971								0	0	0	0.95273	1	17575	17575		4.897	1.3005	1		+		31398	14596	19790	19899	30221	30221					0.09573693777042536
SRSQIKVEV	9	Unmodified	_SRSQIKVEV_					0	0	0			REV__ENST00000471007.1_1_20:32078028-32206262:+|nuORF	REV__ENST00000471007.1_1_20:32078028-32206262:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	523.3041381835938	2	523.303655	1044.59276	0.38243	0.00020013	0.21485	0.00011243	0.59728	0.00031256	523.3036513002883	47.414	1.968	47.414	46.44	48.408	0					106	38	4	0	0	0	0.71898	1	18140	18140		3.9444	0	1	136680000	+		31399	10840	19791	19900	30222	30222					0.07224530363305348
SRSRERKWRIR	11	Unmodified	_SRSRERKWRIR_					0	0	0		RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	510.6344909667969	3	510.634313	1528.88111	0.48267	0.00024647	0.19979	0.00010202	0.68246	0.00034849	510.6343329920732	54.568	1.8356	54.568	53.822	55.658	0					131	35	6	0	0	0	0.74191	4	20721	20721;20949;21184;21210		0.40827	0	1	480590000			31400	18128	19792	19901	30223;30224;30225;30226	30223					0.13782438394059682
SRSRERKWRIR	11	Unmodified	_SRSRERKWRIR_					0	0	0		RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	765.4478759765625	2	765.447831	1528.88111	0.92276	0.00070632	0.020538	1.5721E-05	0.9433	0.00072205	765.4477681612102	54.561	1.6294	54.561	53.873	55.503	0					89	31	4	0	0	0	0.74191	3	20723	20723;20952;21195		1.1933	0	1	282020000			31401	18128	19792	19901	30227;30228;30229	30227					0.13782438394059682
SRSRERKWRIR	11	Unmodified	_SRSRERKWRIR_					0	0	0		RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	511.80328369140625	3	510.634313	1528.88111	0.30279	0.00015462	0.33348	0.00017028	0.63627	0.0003249	510.6343574807025	55.231	1.7929	55.043	53.792	55.585	-0.18797					108	34	5	0	0	0	0.74191	1	21175	21175		0.073264	0	1	288140000			31402	18128	19792	19901	30230	30230					0.13782438394059682
SRSRERKWRIR	11	Unmodified	_SRSRERKWRIR_					0	0	0		RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	510.6340026855469	3	510.634313	1528.88111	0.31646	0.00016159	0.049091	2.5068E-05	0.36555	0.00018666	510.63420557953395	55.338	1.0941	55.021	54.198	55.292	-0.31774					48	20	3	0	0	0	0.74191	1	20477	20477		0	0	1	9956500			31403	18128	19792	19901	30231	30231					0.13782438394059682
SRSRHRRRSR	10	Unmodified	_SRSRHRRRSR_					0	0	0		nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;nc|ENSG00000179335|P49761-2|CLK3;ENST00000454830.6_1_15:74908152-74912599:+|nuORF;CLK3|p.K288Rfs*48|1|0.05|ENSG00000179335|chr15:74622168-74622169|-/GATTG|frameshift_variant	nc|ENSG00000179335|P49761-3|CLK3	nc|ENSG00000179335|P49761-3|CLK3	MSMS	HCT116MG_D190212_S1	1	451.9338073730469	3	451.931352	1352.77223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.802	1	51.802	51.302	52.302	0								0	0	0	0.96453	1	19801	19801		0.62683	0	1				31404	5550	19793	19902	30232	30232					0.1099527221444987
SRSRHRRRSR	10	Unmodified	_SRSRHRRRSR_					0	0	0		nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;nc|ENSG00000179335|P49761-2|CLK3;ENST00000454830.6_1_15:74908152-74912599:+|nuORF;CLK3|p.K288Rfs*48|1|0.05|ENSG00000179335|chr15:74622168-74622169|-/GATTG|frameshift_variant	nc|ENSG00000179335|P49761-3|CLK3	nc|ENSG00000179335|P49761-3|CLK3	MSMS	HCT116MG_D190212_S1	1	677.39599609375	2	677.39339	1352.77223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.331	1	54.331	53.831	54.831	0								0	0	0	0.96521	1	20831	20831		1.3295	0	1				31405	5550	19793	19902	30233	30233					0.1099527221444987
SRSRIRWKRER	11	Unmodified	_SRSRIRWKRER_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	765.4485473632812	2	765.447831	1528.88111	0.92756	0.00071	-0.016799	-1.2858E-05	0.91076	0.00069714	765.447819117988	53.538	0.46365	53.538	53.359	53.822	0					15	8	2	0	0	0	0.74191	1	20492	20492		1.0715	0	1	29350000	+		31406	17484	19794	19903	30234	30234					0.13782438394036944
SRSRIRWKRER	11	Unmodified	_SRSRIRWKRER_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	765.4485473632812	2	765.447831	1528.88111	0.97736	0.00074812	-0.064897	-4.9675E-05	0.91246	0.00069844	765.4476288215586	55.235	1.5347	55.047	53.946	55.481	-0.18797					81	29	6	0	0	0	0.74191	1	21195	21195		1.0715	0	1	150690000	+		31407	17484	19794	19903	30235	30235					0.13782438394036944
SRSRIRWKRER	11	Unmodified	_SRSRIRWKRER_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	765.4481811523438	2	765.447831	1528.88111	0.98181	0.00075152	-0.1097	-8.3967E-05	0.87211	0.00066755	765.447751402619	55.408	0.52089	55.091	54.719	55.24	-0.31774					15	9	2	0	0	0	0.74191	1	20752	20752		1.0715	0	1	5125400	+		31408	17484	19794	19903	30236	30236					0.13782438394036944
SRSRIRWKRER	11	Unmodified	_SRSRIRWKRER_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	765.447831	1528.88111	0.92756	0.00071	-0.016799	-1.2858E-05	0.91076	0.00069714	765.447819117988	53.538	0.46365	53.538	53.359	53.822	0	0	0	NaN	1.0715	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29350000	+		31409	17484	19794	19903							0.13782438394036944
SRSRIRWKRER	11	Unmodified	_SRSRIRWKRER_					0	0	0			REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	REV__RSRC2|p.R174W|1|0.05|ENSG00000111011|chr12:122517309-122517309|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	765.447831	1528.88111	0.98181	0.00075152	-0.1097	-8.3967E-05	0.87211	0.00066755	765.447751402619	55.408	0.52089	55.091	54.719	55.24	-0.31774	0.0216	-5.7151E-05	NaN	1.0715	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5125400	+		31410	17484	19794	19903							0.13782438394036944
SRSRKVQL	8	Unmodified	_SRSRKVQL_					0	0	0			REV__ENST00000568206.1_1_15:28362108-28362639:-|nuORF	REV__ENST00000568206.1_1_15:28362108-28362639:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	487.2991027832031	2	487.298707	972.582862	-0.10631	-5.1804E-05	0.57129	0.00027839	0.46498	0.00022659	487.29900435474616	52.135	1.454	51.79	51.623	53.077	-0.34538					34	27	2	0	0	0	0.85789	1	19468	19468		3.9444	0	1	6225700	+		31411	16548	19795	19904	30237	30237					0.09547387148563757
SRSRLPGP	8	Unmodified	_SRSRLPGP_					0	0	0		ENST00000557627.1_1_14:20869071-20871634:-|nuORF;TEP1|p.N507Efs*11|1|0.29|ENSG00000129566|chr14:20401014-20401015|-/C|frameshift_variant;TEP1|p.L888Wfs*31|1|0.45|ENSG00000129566|chr14:20387928-20387928|G/-|frameshift_variant;TEP1|p.K1597Sfs*14|1|0.27|ENSG00000129566|chr14:20380448-20380448|T/-|frameshift_variant;TEP1|p.V1856Lfs*45|3|0.41|ENSG00000129566|chr14:20378179-20378179|C/-|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	ENST00000557627.1_1_14:20869071-20871634:-|nuORF	ENST00000557627.1_1_14:20869071-20871634:-|nuORF	MSMS	HCT116MG_D190212_S3	3	435.2511901855469	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.824	1	43.517	43.017	44.017	-0.30616								0	0	0	0.8837	1	16364	16364		9.3474	2.9933	1				31412	3039	19796	19905	30238	30238					0.04839453677379879
SRSRRRRRERF	11	Unmodified	_SRSRRRRRERF_					0	0	0			REV__ENST00000522214.1_1_5:65470720-65474693:+|nuORF	REV__ENST00000522214.1_1_5:65470720-65474693:+|nuORF	MSMS	HCT116MG_D190212_S2	2	781.4569702148438	2	781.453979	1560.89341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.05	1	18.68	18.18	19.18	-0.3695								0	0	0	0.96031	1	6583	6583		2.2828	1.9757	1		+		31413	16245	19797	19906	30239	30239					0.13539474857088862
SRSRVGSLL	9	Unmodified	_SRSRVGSLL_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	MULTI-MSMS	HCT116MG_D190212_S1	1	487.7908935546875	2	487.790715	973.566878	0.28651	0.00013976	0.31986	0.00015602	0.60637	0.00029578	487.79074246951876	45.122	3.1262	45.122	43.936	47.062	0					135	59	4	0	0	0	0.68648	2	17400	17400;17641		6.2058	0	1	110330000	+		31414	14274	19798	19907	30240;30241	30240					0.07903680911670108
SRSSRPIKPVK	11	Unmodified	_SRSSRPIKPVK_					0	0	0			REV__nc|ENSG00000141052|Q8IZQ8|MYOCD	REV__nc|ENSG00000141052|Q8IZQ8|MYOCD	MULTI-MSMS	HCT116MG_D190212_S1	1	418.92578125	3	418.926211	1253.7568	0.09111	3.8168E-05	-0.99732	-0.0004178	-0.90621	-0.00037963	418.92572274784715	53.111	0.30747	53.111	52.948	53.255	0					9	5	2	0	0	0	0.74191	1	20366	20366		1.0136	0.31591	1	16318000	+		31415	12323	19799	19908	30242	30242					0.1400754785402114
SRSSRPIKPVK	11	Unmodified	_SRSSRPIKPVK_					0	0	0			REV__nc|ENSG00000141052|Q8IZQ8|MYOCD	REV__nc|ENSG00000141052|Q8IZQ8|MYOCD	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	418.926211	1253.7568	0.09111	3.8168E-05	-0.99732	-0.0004178	-0.90621	-0.00037963	418.92572274784715	53.111	0.30747	53.111	52.948	53.255	0	0	0	NaN	1.0136	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16318000	+		31416	12323	19799	19908							0.1400754785402114
SRSSSGLKKL	10	Unmodified	_SRSSSGLKKL_					0	0	0			REV__ENST00000437629.6_2_10:88854131-88854368:+|nuORF	REV__ENST00000437629.6_2_10:88854131-88854368:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	532.7562255859375	2	531.81693	1061.61931	0.70292	0.00037383	0.48101	0.00025581	1.1839	0.00062964	531.8172797110778	46.465	0.40883	46.153	45.978	46.387	-0.31237					13	7	2	0	0	0	0.88195	1	17378	17378		2.9952	0.69251	1	4770700	+		31417	15634	19800	19909	30243	30243					0.09096219254638527
SRSSSGLKKL	10	Unmodified	_SRSSSGLKKL_					0	0	0			REV__ENST00000437629.6_2_10:88854131-88854368:+|nuORF	REV__ENST00000437629.6_2_10:88854131-88854368:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	531.8165283203125	2	531.81693	1061.61931	0.45346	0.00024116	0.20615	0.00010963	0.65961	0.00035079	531.8168856930787	48.052	2.7036	47.683	46.694	49.397	-0.36907					172	73	4	0	0	0	0.88195	1	17558	17558		2.9952	1.151	1	46123000	+		31418	15634	19800	19909	30244	30244					0.09096219254638527
SRSVEYIFDVH	11	Unmodified	_SRSVEYIFDVH_					0	0	0			REV__tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	REV__tr|U7SVW1|U7SVW1_FUSNUElongationfactor4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=lepAPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	676.3474731445312	2	676.335684	1350.65681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.33	1	43.256	42.756	43.756	-0.073376								0	0	0	0.94145	1	16426	16426		10.8	1.4164	1		+		31419	17846	19801	19910	30245	30245					-0.004487342704351249
SRSVIIREL	9	Unmodified	_SRSVIIREL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;ENST00000518145.1_1_8:103358389-103359193:-|nuORF	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S1	1	536.8270874023438	2	536.827298	1071.64004	0.29982	0.00016095	-0.26655	-0.00014309	0.033267	1.7859E-05	536.8269497077961	36.548	0.20952	36.548	36.417	36.627	0					6	3	2	0	0	0	0.35555	1	13650	13650		31.636	3.4625	1	12315000			31420	1937	19802	19911	30246	30246					0.10708809634297722
SRSVIIREL	9	Unmodified	_SRSVIIREL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;ENST00000518145.1_1_8:103358389-103359193:-|nuORF	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MSMS	HCT116MG_D190212_S1	1	358.22052001953125	3	358.220624	1071.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.646	1	36.646	36.146	37.146	0								0	0	0	0.76837	1	13667	13667		6.6235	2.7471	1				31421	1937	19802	19911	30247	30247					0.10708809634297722
SRSVIIREL	9	Unmodified	_SRSVIIREL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant;ENST00000518145.1_1_8:103358389-103359193:-|nuORF	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	536.8273315429688	2	536.827298	1071.64004	0.55765	0.00029936	-0.095225	-5.1119E-05	0.46243	0.00024825	536.8272178394726	36.588	0.25853	36.473	36.343	36.602	-0.11478					6	4	2	0	0	0	0.30386	1	13712	13712		37.771	13.982	1	20095000			31422	1937	19802	19911	30248	30248					0.10708809634297722
SRTRNAISDRD	11	Unmodified	_SRTRNAISDRD_					0	0	0			REV__nc|ENSG00000127870|Q9Y252-2|RNF6	REV__nc|ENSG00000127870|Q9Y252-2|RNF6	MSMS	HCT116MG_D190212_S4	4	430.8884582519531	3	430.888485	1289.64362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.08835	1	-0.17621	-0.67621	0.32379	-0.26456								0	0	0	0.96208	1	35	35		0	0	1		+		31423	11864	19803	19912	30249	30249					0.010388276701633004
SRUSSGSISPA	11	Unmodified	_SRUSSGSISPA_					0	0	0			REV__nc|ENSG00000211452|P49895-6|DIO1	REV__nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S1	1	550.2177124023438	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.1656	1	4.1656	3.6656	4.6656	0								0	0	0	0.96208	1	1247	1247		0	0	0		+		31424	17276	19804	19913	30250	30250					-0.12441489949947027
SRUSSGSISPA	11	Unmodified	_SRUSSGSISPA_					0	0	0			REV__nc|ENSG00000211452|P49895-6|DIO1	REV__nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.2177124023438	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2681	1	6.0935	5.5935	6.5935	-0.17458								0	0	0	0.96208	1	1974	1974		0	0	0		+		31425	17276	19804	19913	30251	30251					-0.12441489949947027
SRUSSGSISPA	11	Unmodified	_SRUSSGSISPA_					0	0	0			REV__nc|ENSG00000211452|P49895-6|DIO1	REV__nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.2177124023438	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.886	1	10.613	10.113	11.113	-0.27365								0	0	0	0.96208	1	3474	3474		0	0	0		+		31426	17276	19804	19913	30252	30252					-0.12441489949947027
SRUSSGSISPA	11	Unmodified	_SRUSSGSISPA_					0	0	0			REV__nc|ENSG00000211452|P49895-6|DIO1	REV__nc|ENSG00000211452|P49895-6|DIO1	MSMS	HCT116MG_D190212_S2	2	550.2177124023438	2	550.217706	1098.42086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.466	1	12.169	11.669	12.669	-0.29721								0	0	0	0.96208	1	4076	4076		0	0	0		+		31427	17276	19804	19913	30253	30253					-0.12441489949947027
SRVRLKGT	8	Unmodified	_SRVRLKGT_					0	0	0			REV__CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant	REV__CEP112|p.E582Rfs*4|1|0.3|ENSG00000154240|chr17:65961592-65961592|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	916.5678100585938	1	916.568675	915.561398	0.6983	0.00064004	0.13354	0.0001224	0.83184	0.00076244	916.5685310001786	50.829	0.88763	50.516	50.177	51.065	-0.31381					37	16	3	0	0	0	0.87576	1	19127	19127		0.79363	0	1	40121000	+		31428	10154	19805	19914	30254	30254					0.10024002119860143
SRVRRAIAPT	10	Unmodified	_SRVRRAIAPT_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MSMS	HCT116MG_D190212_S3	3	376.2327880859375	3	376.231634	1125.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.768	1	58.504	58.004	59.004	-0.26405								0	0	0	0.96453	1	22363	22363		0.62683	0.21856	1				31429	6692	19806	19915	30255	30255					0.11526436476970048
SRWIQSQVP	9	Unmodified	_SRWIQSQVP_					0	0	0			REV__PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	REV__PDE4DIP|p.E1085Ffs*6|1|0.06|ENSG00000178104|chr1:149001704-149001705|-/GTTCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	550.7960205078125	2	550.795998	1099.57744	0.39932	0.00021994	-0.017794	-9.8011E-06	0.38152	0.00021014	550.7959384056447	28.141	0.46537	27.811	27.512	27.977	-0.32987					15	8	3	0	0	0	0.15273	1	10213	10213		47.749	5.6541	1	25631000	+		31430	13596	19807	19916	30256	30256					0.031636635661016044
SRYGDIRRL	9	Unmodified	_SRYGDIRRL_					0	0	0		SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant;ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant	SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	379.2161560058594	3	379.215873	1134.62579	-0.10055	-3.813E-05	0.13355	5.0644E-05	0.033	1.2514E-05	379.21596439231746	27.663	0.20735	27.321	27.191	27.398	-0.34201					5	3	2	0	0	0	0.65644	1	10088	10088		7.9454	1.315	1	14548000			31431	5762	19808	19917	30257	30257					0.06386157205997733
SRYGDIRRL	9	Unmodified	_SRYGDIRRL_					0	0	0		SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant;ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant	SNRNP35|p.K148Rfs*6|2|0.33|ENSG00000184209|chr12:123465978-123465978|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		3	379.215873	1134.62579	-0.14278	-5.4146E-05	-0.41164	-0.0001561	-0.55443	-0.00021025	379.21589702712436	27.183	0.15652	27.183	27.073	27.23	0	-0.068817	-0.00040929	NaN	7.9454	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4324600			31432	5762	19808	19917							0.06386157205997733
SRYYYYMWKYI	11	Unmodified	_SRYYYYMWKYI_					0	0	0		nc|ENSG00000072041|Q9H2J7-3|SLC6A15;SLC6A15|p.K680Tfs*24|1|0.02|ENSG00000072041|chr12:84861786-84861787|-/TCATTGTTCGTCGCTTCAACCTTATAGATGATAG|frameshift_variant;ENSG00000072041|ENST00000266682|SLC6A15	nc|ENSG00000072041|Q9H2J7-3|SLC6A15	nc|ENSG00000072041|Q9H2J7-3|SLC6A15	MSMS	HCT116MG_D190212_S3	3	818.3894653320312	2	818.386862	1634.75917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.7	1	34.403	33.903	34.903	-0.29707								0	0	0	0.96157	1	12782	12782		0.26902	0.26902	1				31433	1261	19809	19918	30258	30258					-0.03281784523187525
SSAATSVVK	9	Unmodified	_SSAATSVVK_					0	0	0			REV__sp|Q6SWC9|RL13_HCMVMMembraneproteinRL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL13PE=3SV=1	REV__sp|Q6SWC9|RL13_HCMVMMembraneproteinRL13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL13PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	425.2373352050781	2	425.23745	848.460347	-0.16257	-6.9131E-05	0.014464	6.1507E-06	-0.14811	-6.298E-05	425.23740015985777	18.293	0.20904	17.93	17.799	18.008	-0.36325					5	3	2	0	0	0	0.16306	1	6306	6306		45.7	3.7441	1	11184000	+		31434	17582	19810	19919	30259	30259					0.030055056264700397
SSAKTILKY	9	Unmodified	_SSAKTILKY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	HCT116MG_D190212_S1	1	505.79779052734375	2	505.797675	1009.5808	0.26991	0.00013652	-0.30508	-0.00015431	-0.035176	-1.7792E-05	505.79755668098477	29.919	0.15612	29.919	29.841	29.997	0					4	2	2	0	0	0	0.028026	1	10980	10980		88.364	50.188	1	11042000			31435	2213	19811	19920	30260	30260					0.07638913620087351
SSAKTILKY	9	Unmodified	_SSAKTILKY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7977294921875	2	505.797675	1009.5808	0.15295	7.7362E-05	-0.22111	-0.00011184	-0.068159	-3.4475E-05	505.79748049821774	30.44	0.20504	30.156	30.028	30.233	-0.28453					6	3	2	0	0	0	0.07649	1	11217	11217		62.869	26.362	1	32722000			31436	2213	19811	19920	30261	30261					0.07638913620087351
SSALFYFSCH	10	Unmodified	_SSALFYFSCH_					0	0	0			REV__ENST00000594295.5_1_19:52592212-52597316:-|nuORF	REV__ENST00000594295.5_1_19:52592212-52597316:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	581.2804565429688	2	581.255317	1160.49608	0.42126	0.00024486	-0.48327	-0.00028091	-0.062011	-3.6044E-05	581.2549435002807	22.154	0.20825	22.155	22.042	22.25	0.00074577					5	3	2	0	0	0	0.28496	1	7762	7762		19.257	1.8143	1	5549100	+		31437	16712	19812	19921	30262	30262					-0.07774780188196928
SSAPLEPF	8	Unmodified	_SSAPLEPF_					0	0	0			REV__SYNRG|p.Q478P|1|0.11|ENSG00000275066|chr17:37568839-37568839|T/G|missense_variant	REV__SYNRG|p.Q478P|1|0.11|ENSG00000275066|chr17:37568839-37568839|T/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	424.21356201171875	2	424.213443	846.412334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.189	1	25.828	25.328	26.328	-0.36164								0	0	0	0.68119	1	9464	9464		32.117	1.4804	1		+		31438	17610	19813	19922	30263	30263					-0.017015682935721088
SSAPPQLEY	9	Unmodified	_SSAPPQLEY_					0	0	0			REV__ENSG00000081842|ENST00000529310|PCDHA6	REV__ENSG00000081842|ENST00000529310|PCDHA6	MULTI-MSMS	HCT116MG_D190212_S3	3	496.240234375	2	496.24019	990.465826	0.22354	0.00011093	0.27213	0.00013504	0.49567	0.00024597	496.2400581986561	31.152	0.31332	30.891	30.709	31.022	-0.26071					7	5	2	0	0	0	0.43843	1	11390	11390		20.415	0.97554	1	3039000	+		31439	10881	19814	19923	30264	30264					-0.029788155817072948
SSAPPREVTTF	11	Unmodified	_SSAPPREVTTF_					0	0	0		nc|ENSG00000160753|Q9BVN2-4|RUSC1;ENSG00000160753|ENST00000368352|RUSC1	nc|ENSG00000160753|Q9BVN2-4|RUSC1	nc|ENSG00000160753|Q9BVN2-4|RUSC1	MSMS	HCT116MG_D190212_S4	4	596.3050537109375	2	596.303852	1190.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.699	1	21.48	20.98	21.98	-0.21832								0	0	0	0.93295	1	7506	7506		15.248	0	1				31440	4462	19815	19924	30265	30265					0.0054790529247839
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4;ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10	ENSG00000241598|ENST00000399682|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	MULTI-MSMS	HCT116MG_D190212_S1	1	816.2150268554688	1	816.214327	815.207051	0.95062	0.00077591	-1.9312	-0.0015762	-0.98054	-0.00080033	816.2143931967896	1.465	0.11479	1.465	1.4076	1.5223	0					20	14	2	0	0	0	0.88026	1	427	427		0	0	1	314480			31441	6543	19816	19925	30266	30266					-0.20794452682969222
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4;ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10	ENSG00000241598|ENST00000399682|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	MULTI-MSMS	HCT116MG_D190212_S1	1	816.2151489257812	1	816.214327	815.207051	0.95068	0.00077596	-2.3948	-0.0019547	-1.4441	-0.0011787	816.2146904232155	4.2869	0.42357	4.2869	4.0316	4.4551	0					51	41	2	0	0	0	0.88026	2	1293	1293;1301		0	0	1	275560			31442	6543	19816	19925	30267;30268	30267					-0.20794452682969222
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4;ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10	ENSG00000241598|ENST00000399682|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	MULTI-MSMS	HCT116MG_D190212_S1	1	816.2142944335938	1	816.214327	815.207051	0.95067	0.00077595	-2.6427	-0.002157	-1.6921	-0.0013811	816.2141533515783	7.1172	0.20478	7.1172	7.0203	7.2251	0					31	21	2	0	0	0	0.88026	1	2145	2145		0	0	1	236550			31443	6543	19816	19925	30269	30269					-0.20794452682969222
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4;ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10	ENSG00000241598|ENST00000399682|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	MULTI-MSMS	HCT116MG_D190212_S1	1	816.2161254882812	1	816.214327	815.207051	0.95063	0.00077592	-2.3771	-0.0019402	-1.4264	-0.0011643	816.2143589671047	7.8218	0.2193	7.8218	7.6444	7.8637	0					26	22	2	0	0	0	0.88026	1	2325	2325		0	0	1	294050			31444	6543	19816	19925	30270	30270					-0.20794452682969222
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4;ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10	ENSG00000241598|ENST00000399682|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	MULTI-SECPEP	HCT116MG_D190212_S1	1	816.215576171875	1	816.214327	815.207051	0.77524	0.00063276	-2.7225	-0.0022221	-1.9473	-0.0015894	816.2141962312463	63.444	0.13903	63.444	63.338	63.477	0					6	5	2	0	0	0	0.33627	1	24488	24488		0	0	1	172210			31445	6543	19816	19925	30271	30271					-0.20794452682969222
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4;ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10	ENSG00000241598|ENST00000399682|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	MULTI-MSMS	HCT116MG_D190212_S2	2	816.2152709960938	1	816.214327	815.207051	0.74189	0.00060554	-1.9383	-0.0015821	-1.1964	-0.00097656	816.2149003213383	0.30246	0.1275	0.29852	0.25329	0.38079	-0.0039395					19	12	2	0	0	0	0.88026	1	109	109		0	0	1	252340			31446	6543	19816	19925	30272	30272					-0.20794452682969222
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4;ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10	ENSG00000241598|ENST00000399682|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	MULTI-MSMS	HCT116MG_D190212_S2	2	816.2135620117188	1	816.214327	815.207051	0.74186	0.00060552	-0.74221	-0.0006058	-0.00034551	-2.8201E-07	816.2149917055497	5.2023	0.21285	5.0836	5.0179	5.2308	-0.11871					23	17	2	0	0	0	0.88026	1	1642	1642		0	0	1	209550			31447	6543	19816	19925	30273	30273					-0.20794452682969222
SSCCNPCC	8	Unmodified	_SSCCNPCC_					0	0	0		ENSG00000241598|ENST00000399682|KRTAP5-4;nc|ENSG00000241598|Q6L8H1|KRTAP5-4;ENSG00000244411|ENST00000398536|KRTAP5-7;ENSG00000204572|ENST00000398531|KRTAP5-10	ENSG00000241598|ENST00000399682|KRTAP5-4	ENSG00000241598|ENST00000399682|KRTAP5-4	MULTI-MATCH	HCT116MG_D190212_S1	1		1	816.214327	815.207051	0.95066	0.00077594	-1.9269	-0.0015728	-0.97625	-0.00079683	816.2151263898241	0.43994	0.076819	0.43994	0.40455	0.48136	0	0.070706	4.4261E-06	NaN	0	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239860			31448	6543	19816	19925							-0.20794452682969222
SSCCRRGTK	9	Unmodified	_SSCCRRGTK_					0	0	0			REV__ENST00000503395.5_1_9:141044676-141068500:+|nuORF	REV__ENST00000503395.5_1_9:141044676-141068500:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	499.23736572265625	2	499.236935	996.459318	0.37029	0.00018486	0.68363	0.00034129	1.0539	0.00052615	499.23736787925037	16.603	0.31224	16.603	16.473	16.785	0					6	5	2	0	0	0	0.66792	1	5629	5629		7.2892	2.96	1	2410700	+		31449	16125	19817	19926	30274	30274					-0.03905355285723999
SSDAHTSYY	9	Unmodified	_SSDAHTSYY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S1	1	515.7093505859375	2	515.709254	1029.40395	0.48446	0.00024984	-0.71283	-0.00036761	-0.22837	-0.00011777	515.7089299583263	24.238	0.26205	24.238	24.098	24.36	0					6	4	2	0	0	0	0.010304	1	8690	8690		112.59	76.466	1	7862300			31450	1680	19818	19927	30275	30275					-0.10957167000856316
SSDAHTSYY	9	Unmodified	_SSDAHTSYY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S2	2	1030.4127197265625	1	1030.41123	1029.40395	0.39412	0.00040611	-0.056601	-5.8322E-05	0.33752	0.00034779	1030.4111861131805	24.75	0.20821	24.37	24.239	24.448	-0.38003					5	3	2	0	0	0	0.012168	1	8899	8899		108	79.51	1	7507200			31451	1680	19818	19927	30276	30276					-0.10957167000856316
SSDAHTSYY	9	Unmodified	_SSDAHTSYY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	HCT116MG_D190212_S2	2	515.7095336914062	2	515.709254	1029.40395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.75	1	24.37	23.87	24.87	-0.38								0	0	0	0.0037621	1	8883	8883		120.45	77.482	1				31452	1680	19818	19927	30277	30277					-0.10957167000856316
SSDAHTSYY	9	Unmodified	_SSDAHTSYY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7094116210938	2	515.709254	1029.40395	0.12534	6.4639E-05	0.18687	9.637E-05	0.31221	0.00016101	515.7093247402378	24.295	0.4682	24.233	24.051	24.519	-0.061449					15	8	3	0	0	0	0.004194	1	8623	8623		147.83	111.7	1	25369000			31453	1680	19818	19927	30278	30278					-0.10957167000856316
SSDAHTSYY	9	Unmodified	_SSDAHTSYY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S4	4	515.7089233398438	2	515.709254	1029.40395	0.42729	0.00022036	-0.43851	-0.00022614	-0.011215	-5.7834E-06	515.7089935698299	24.636	0.31082	24.367	24.186	24.497	-0.26881					9	5	2	0	0	0	0.013464	2	8689	8689;8727		104.8	64.842	1	6690600			31454	1680	19818	19927	30279;30280	30279					-0.10957167000856316
SSDANPVRY	9	Unmodified	_SSDANPVRY_					0	0	0		MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L4077Cfs*15|1|0.16|ENSG00000112159|chr6:89680625-89680625|G/-|frameshift_variant;MDN1|p.K2642Nfs*17|2|0.29|ENSG00000112159|chr6:89707449-89707449|T/-|frameshift_variant;MDN1|p.E2692*|2|0.32|ENSG00000112159|chr6:89706133-89706134|-/A|frameshift_variant;MDN1|p.F2691Lfs*7|2|0.37|ENSG00000112159|chr6:89706134-89706134|A/-|frameshift_variant;MDN1|p.D409Rfs*22|1|0.16|ENSG00000112159|chr6:89789788-89789789|-/G|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MDN1|p.L5278Ffs*6|1|0.18|ENSG00000112159|chr6:89652273-89652274|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	504.7412414550781	2	504.740888	1007.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.722	1	25.594	25.094	26.094	-0.12795								0	0	0	0.0058398	1	9196	9196		114.65	70.242	1				31455	2330	19819	19928	30281	30281					-0.03621181492951564
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	522.230224609375	2	522.230019	1042.44548	0.38924	0.00020327	0.15069	7.8696E-05	0.53993	0.00028197	522.2299908078555	27.618	0.36231	27.618	27.438	27.8	0					13	6	3	0	0	0	0.0035894	1	10030	10030		176.43	101.5	1	36513000			31456	21	19820	19929	30282	30282					-0.07404031032183411
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	522.2300415039062	2	522.230019	1042.44548	0.36729	0.00019181	0.27613	0.0001442	0.64342	0.00033601	522.2300504278624	28.074	0.41446	27.744	27.563	27.977	-0.32987					17	7	3	0	0	0	0.0035894	1	10208	10208		176.43	101.5	1	157780000			31457	21	19820	19929	30283	30283					-0.07404031032183411
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1043.4541015625	1	1043.45276	1042.44548	0.763	0.00079615	0.01695	1.7687E-05	0.77995	0.00081384	1043.4531748883649	28.028	0.31081	27.698	27.563	27.874	-0.32987					12	5	3	0	0	0	0.0096585	1	10232	10232		114.19	46.106	1	21531000			31458	21	19820	19929	30284	30284					-0.07404031032183411
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	522.2302856445312	2	522.230019	1042.44548	0.29482	0.00015397	0.13649	7.1279E-05	0.43131	0.00022524	522.2299476216165	27.989	0.41685	27.801	27.621	28.038	-0.18847					20	7	4	0	0	0	0.0035894	1	10100	10100		176.43	91.155	1	39070000			31459	21	19820	19929	30285	30285					-0.07404031032183411
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1043.452392578125	1	1043.45276	1042.44548	0.53267	0.00055581	-0.42056	-0.00043884	0.1121	0.00011697	1043.452424721657	28.006	0.31257	27.817	27.673	27.985	-0.18847					6	5	2	0	0	0	0.30874	1	10142	10142		29.841	1.6674	1	3306900			31460	21	19820	19929	30286	30286					-0.07404031032183411
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant;ACAP2|p.G547Efs*90|1|0.05|ENSG00000114331|chr3:195295740-195295741|-/TTCTACATATT|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	ACAP2|p.N618Tfs*15|1|0.31|ENSG00000114331|chr3:195292365-195292365|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	522.2304077148438	2	522.230019	1042.44548	0.3203	0.00016727	0.24444	0.00012765	0.56474	0.00029493	522.2301041033976	28.161	0.41635	27.83	27.7	28.116	-0.33138					11	7	2	0	0	0	0.0041644	1	10117	10117		148.27	86.911	1	6150900			31461	21	19820	19929	30287	30287					-0.07404031032183411
SSDGAISLL	9	Unmodified	_SSDGAISLL_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	862.4522094726562	1	862.451639	861.444362	0.75248	0.00064897	-0.10222	-8.8158E-05	0.65026	0.00056082	862.4514108663886	52.87	0.36013	52.681	52.501	52.861	-0.18922					11	6	2	0	0	0	0.031005	1	20328	20328		85.357	21.12	1	16784000			31462	4309	19821	19930	30288	30288					0.008097993895830768
SSDGAISLL	9	Unmodified	_SSDGAISLL_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	862.4526977539062	1	862.451639	861.444362	0.93051	0.00080252	-0.29953	-0.00025833	0.63097	0.00054419	862.4514515914859	53.102	0.31388	52.799	52.617	52.931	-0.30305					8	5	2	0	0	0	0.019399	1	20102	20102		97.075	28.994	1	3983800			31463	4309	19821	19930	30289	30289					0.008097993895830768
SSDGAISLL	9	Unmodified	_SSDGAISLL_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	862.451904296875	1	862.451639	861.444362	0.77448	0.00066795	-0.70653	-0.00060935	0.067949	5.8602E-05	862.4512660075401	53.151	0.20853	52.816	52.722	52.931	-0.33473					5	3	2	0	0	0	0.1037	1	19870	19870		57.471	6.6163	1	1572400			31464	4309	19821	19930	30290	30290					0.008097993895830768
SSDGAISLLTY	11	Unmodified	_SSDGAISLLTY_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1126.5633544921875	1	1126.56265	1125.55537	0.70358	0.00079263	-0.11174	-0.00012589	0.59184	0.00066675	1126.5624184964256	54.917	0.20372	54.917	54.79	54.994	0					5	3	2	0	0	0	0.62391	1	21104	21104		32.786	10.049	1	32701000			31465	4309	19822	19931	30291	30291					-0.002386056929935876
SSDGAISLLTY	11	Unmodified	_SSDGAISLLTY_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	563.7854614257812	2	563.784961	1125.55537	0.42724	0.00024087	0.17771	0.00010019	0.60494	0.00034106	563.7849814303356	55.131	0.30481	54.943	54.765	55.07	-0.18797					11	5	3	0	0	0	0.032773	1	21246	21246		107.19	49.465	1	138960000			31466	4309	19822	19931	30292	30292					-0.002386056929935876
SSDGAISLLTY	11	Unmodified	_SSDGAISLLTY_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1126.563720703125	1	1126.56265	1125.55537	0.55596	0.00062632	0.054723	6.1649E-05	0.61068	0.00068797	1126.5624452375748	55.131	0.25395	54.943	54.765	55.019	-0.18797					10	4	3	0	0	0	0.06227	1	21250	21250		96.111	44.481	1	143920000			31467	4309	19822	19931	30293	30293					-0.002386056929935876
SSDGAISLLTY	11	Unmodified	_SSDGAISLLTY_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	563.7852172851562	2	563.784961	1125.55537	0.42796	0.00024128	0.10932	6.1633E-05	0.53728	0.00030291	563.7849149941857	55.244	0.26151	54.953	54.822	55.083	-0.2918					8	4	3	0	0	0	0.7259	1	20980	20980		12.241	4.9514	1	7860400			31468	4309	19822	19931	30294	30294					-0.002386056929935876
SSDGAISLLTY	11	Unmodified	_SSDGAISLLTY_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	563.784961	1125.55537	0.47924	0.00027019	-0.055928	-3.1531E-05	0.42331	0.00023866	563.7851221285126	54.913	0.20372	54.913	54.79	54.994	0	-0.023222	-0.0001507	NaN	107.19	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29650000			31469	4309	19822	19931							-0.002386056929935876
SSDGAISLLTY	11	Unmodified	_SSDGAISLLTY_					0	0	0		ENST00000482647.5_1_3:10353516-10354476:-|nuORF;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000482647.5_1_3:10353516-10354476:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1126.56265	1125.55537	0.41644	0.00046915	-0.3744	-0.00042178	0.042045	4.7366E-05	1126.562222066619	55.244	0.20924	54.953	54.822	55.031	-0.2918	0.01492	-0.00028472	NaN	96.111	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5793800			31470	4309	19822	19931							-0.002386056929935876
SSDGHEFIV	9	Unmodified	_SSDGHEFIV_					0	0	0		ENST00000529735.1_1_11:120490841-120490928:-|nuORF;ENST00000566760.1_1_15:41849284-41849628:+|nuORF;nc|ENSG00000154582|Q15369-2|ELOC;ENSG00000154582|ENST00000520242|ELOC	ENST00000529735.1_1_11:120490841-120490928:-|nuORF	ENST00000529735.1_1_11:120490841-120490928:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	495.7300109863281	2	495.729989	989.445425	0.72681	0.0003603	0.0074152	3.6759E-06	0.73422	0.00036398	495.7298361739117	41.524	0.3127	41.524	41.341	41.654	0					9	5	2	0	0	0	0.19218	1	15646	15646		42.095	11.87	1	10757000			31471	4224	19823	19932	30295	30295					-0.04971986241525883
SSDGHEFIV	9	Unmodified	_SSDGHEFIV_					0	0	0		ENST00000529735.1_1_11:120490841-120490928:-|nuORF;ENST00000566760.1_1_15:41849284-41849628:+|nuORF;nc|ENSG00000154582|Q15369-2|ELOC;ENSG00000154582|ENST00000520242|ELOC	ENST00000529735.1_1_11:120490841-120490928:-|nuORF	ENST00000529735.1_1_11:120490841-120490928:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	495.7305908203125	2	495.729989	989.445425	0.4794	0.00023765	0.39196	0.0001943	0.87135	0.00043195	495.7301008338286	41.503	0.3072	41.434	41.293	41.601	-0.068195					12	5	3	0	0	0	0.031005	1	15694	15694		85.357	55.132	1	61567000			31472	4224	19823	19932	30296	30296					-0.04971986241525883
SSDGHEFIV	9	Unmodified	_SSDGHEFIV_					0	0	0		ENST00000529735.1_1_11:120490841-120490928:-|nuORF;ENST00000566760.1_1_15:41849284-41849628:+|nuORF;nc|ENSG00000154582|Q15369-2|ELOC;ENSG00000154582|ENST00000520242|ELOC	ENST00000529735.1_1_11:120490841-120490928:-|nuORF	ENST00000529735.1_1_11:120490841-120490928:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	495.7294006347656	2	495.729989	989.445425	0.15819	7.8419E-05	0.16865	8.3607E-05	0.32684	0.00016203	495.7299973447197	41.785	0.33467	41.482	41.342	41.677	-0.30257					17	8	3	0	0	0	0.071351	1	15523	15523		64.236	39.562	1	20695000			31473	4224	19823	19932	30297	30297					-0.04971986241525883
SSDGHEFIV	9	Unmodified	_SSDGHEFIV_					0	0	0		ENST00000529735.1_1_11:120490841-120490928:-|nuORF;ENST00000566760.1_1_15:41849284-41849628:+|nuORF;nc|ENSG00000154582|Q15369-2|ELOC;ENSG00000154582|ENST00000520242|ELOC	ENST00000529735.1_1_11:120490841-120490928:-|nuORF	ENST00000529735.1_1_11:120490841-120490928:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	495.7297058105469	2	495.729989	989.445425	0.38204	0.00018939	-0.10226	-5.0694E-05	0.27978	0.0001387	495.72998324949515	41.88	0.4452	41.504	41.341	41.786	-0.37637					14	10	2	0	0	0	0.071351	1	15349	15349		64.236	35.749	1	9616400			31474	4224	19823	19932	30298	30298					-0.04971986241525883
SSDGHERLI	9	Unmodified	_SSDGHERLI_					0	0	0			REV__LDHAL6B|p.G240R|1|0.25|ENSG00000171989|chr15:59207658-59207658|G/A|missense_variant	REV__LDHAL6B|p.G240R|1|0.25|ENSG00000171989|chr15:59207658-59207658|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	507.3392639160156	2	507.254163	1012.49377	0.19919	0.00010104	0.11252	5.7076E-05	0.31171	0.00015811	507.25418957794506	23.108	1.4984	23.068	22.523	24.021	-0.03968					42	28	3	0	0	0	0.57626	1	8385	8385		12.532	0.29089	1	9703600	+		31475	16974	19824	19933	30299	30299					-0.01197492601625072
SSDIDKLQY	9	Unmodified	_SSDIDKLQY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.7634887695312	2	534.764029	1067.5135	0.47421	0.00025359	-0.33929	-0.00018144	0.13492	7.2152E-05	534.7638866894133	35.142	0.20704	34.984	34.865	35.072	-0.15834					6	3	2	0	0	0	0.016744	1	13131	13131		99.755	57.916	1	17517000			31476	1439	19825	19934	30300	30300					-0.017551613814930533
SSDIDKLQY	9	Unmodified	_SSDIDKLQY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	534.3123168945312	2	534.764029	1067.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.379	1	35.08	34.58	35.58	-0.29922								0	0	0	0.094981	1	13057	13057		57.471	37.018	1				31477	1439	19825	19934	30301	30301					-0.017551613814930533
SSDIDKLQY	9	Unmodified	_SSDIDKLQY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	534.7648315429688	2	534.764029	1067.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.433	1	35.134	34.634	35.634	-0.29922								0	0	0	4.4445E-08	1	13077	13077		160.69	95.455	1				31478	1439	19825	19934	30302	30302					-0.017551613814930533
SSDISDFAPP	10	Unmodified	_SSDISDFAPP_					0	0	0			REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	REV__tr|U7SWV5|U7SWV5_FUSNUBD-FAE-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01186PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	518.2366333007812	2	518.235104	1034.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.492	1	23.492	22.992	23.992	0								0	0	0	0.90023	1	8369	8369		15.847	1.0089	1		+		31479	17859	19826	19935	30303	30303					-0.06019423306952376
SSDKDGDSVHT	11	Unmodified	_SSDKDGDSVHT_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-MSMS	HCT116MG_D190212_S1	1	574.7493286132812	2	574.246731	1146.47891	0.3847	0.00022091	1.0923	0.00062726	1.477	0.00084817	574.7489306717661	21.698	0.20824	21.698	21.594	21.802	0					5	3	2	0	0	0	0.46155	1	7659	7659		49.554	1.8056	1	7945300			31480	1900	19827	19936	30304	30304					-0.0884702926027785
SSDKDGDSVHT	11	Unmodified	_SSDKDGDSVHT_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-MSMS	HCT116MG_D190212_S2	2	574.2479858398438	2	574.246731	1146.47891	0.49724	0.00028554	0.78801	0.00045251	1.2853	0.00073805	574.2474001664704	22.272	0.25953	21.887	21.739	21.999	-0.3852					11	4	3	0	0	0	0.35116	1	7884	7884		59.368	3.8656	1	47180000			31481	1900	19827	19936	30305	30305					-0.0884702926027785
SSDKDGDSVHT	11	Unmodified	_SSDKDGDSVHT_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-MSMS	HCT116MG_D190212_S3	3	383.16705322265625	3	383.166913	1146.47891	-0.12005	-4.6E-05	0.84163	0.00032248	0.72158	0.00027648	383.16717783696146	21.505	0.2646	21.523	21.377	21.641	0.018446					7	4	2	0	0	0	0.7093	1	7508	7508		11.065	0	1	4491800			31482	1900	19827	19936	30306	30306					-0.0884702926027785
SSDKGRLCY	9	Unmodified	_SSDKGRLCY_					0	0	0		ENSG00000119392|ENST00000309971|GLE1;nc|ENSG00000119392|Q53GS7-2|GLE1;GLE1|p.K455Nfs*31|1|0.1|ENSG00000119392|chr9:128533562-128533562|A/-|frameshift_variant	ENSG00000119392|ENST00000309971|GLE1	ENSG00000119392|ENST00000309971|GLE1	MULTI-MSMS	HCT116MG_D190212_S2	2	514.7454223632812	2	514.745116	1027.47568	0.22482	0.00011573	0.047634	2.4519E-05	0.27245	0.00014024	514.7450958516444	25.373	0.26036	24.998	24.816	25.076	-0.37521					7	4	2	0	0	0	0.016744	1	9146	9146		99.755	59.806	1	31923000			31483	2637	19828	19937	30307	30307					-0.03695950847986751
SSDKGRLCYY	10	Unmodified	_SSDKGRLCYY_					0	0	0		ENSG00000119392|ENST00000309971|GLE1;nc|ENSG00000119392|Q53GS7-2|GLE1;GLE1|p.K455Nfs*31|1|0.1|ENSG00000119392|chr9:128533562-128533562|A/-|frameshift_variant	ENSG00000119392|ENST00000309971|GLE1	ENSG00000119392|ENST00000309971|GLE1	MULTI-MSMS	HCT116MG_D190212_S2	2	596.2769775390625	2	596.27678	1190.53901	0.61647	0.00036759	-0.36922	-0.00022016	0.24725	0.00014743	596.2765931599922	30.975	0.36152	30.708	30.56	30.922	-0.26704					9	6	2	0	0	0	0.0064345	1	11424	11424		163.69	115.94	1	42146000			31484	2637	19829	19938	30308	30308					-0.04864010130745555
SSDKGRLCYY	10	Unmodified	_SSDKGRLCYY_					0	0	0		ENSG00000119392|ENST00000309971|GLE1;nc|ENSG00000119392|Q53GS7-2|GLE1;GLE1|p.K455Nfs*31|1|0.1|ENSG00000119392|chr9:128533562-128533562|A/-|frameshift_variant	ENSG00000119392|ENST00000309971|GLE1	ENSG00000119392|ENST00000309971|GLE1	MULTI-MSMS	HCT116MG_D190212_S3	3	596.2769775390625	2	596.27678	1190.53901	0.50729	0.00030249	-0.32292	-0.00019255	0.18438	0.00010994	596.2764326872004	31.152	0.31332	30.891	30.709	31.022	-0.26071					9	5	2	0	0	0	0.014847	1	11373	11373		132.38	88.521	1	10566000			31485	2637	19829	19938	30309	30309					-0.04864010130745555
SSDKITTGY	9	Unmodified	_SSDKITTGY_					0	0	0		SETDB2|p.G380Vfs*5|1|0.17|ENSG00000136169|chr13:49481060-49481060|G/-|frameshift_variant;ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2	SETDB2|p.G380Vfs*5|1|0.17|ENSG00000136169|chr13:49481060-49481060|G/-|frameshift_variant	SETDB2|p.G380Vfs*5|1|0.17|ENSG00000136169|chr13:49481060-49481060|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	486.23785400390625	2	486.237647	970.460741	0.13825	6.7223E-05	0.45784	0.00022262	0.59609	0.00028984	486.2377356275335	25.379	0.25994	25.379	25.249	25.509	0					10	4	3	0	0	0	0.026272	1	9149	9149		90.135	55.733	1	10823000			31486	3398	19830	19939	30310	30310					-0.025671194443361856
SSDKITTGY	9	Unmodified	_SSDKITTGY_					0	0	0		SETDB2|p.G380Vfs*5|1|0.17|ENSG00000136169|chr13:49481060-49481060|G/-|frameshift_variant;ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2	SETDB2|p.G380Vfs*5|1|0.17|ENSG00000136169|chr13:49481060-49481060|G/-|frameshift_variant	SETDB2|p.G380Vfs*5|1|0.17|ENSG00000136169|chr13:49481060-49481060|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	486.2370300292969	2	486.237647	970.460741	0.2062	0.00010026	-0.091824	-4.4648E-05	0.11437	5.5613E-05	486.2375650203837	25.79	0.25874	25.42	25.291	25.55	-0.36914					8	4	2	0	0	0	0.00446	1	9314	9314		143.91	87.732	1	27324000			31487	3398	19830	19939	30311	30311					-0.025671194443361856
SSDKSGMIEY	10	Unmodified	_SSDKSGMIEY_					0	0	0		nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	MULTI-MSMS	HCT116MG_D190212_S1	1	558.7479248046875	2	558.747521	1115.48049	0.62377	0.00034853	-0.13789	-7.7046E-05	0.48588	0.00027148	558.7474231209036	32.959	0.24539	32.959	32.843	33.089	0					8	4	2	0	0	0	0.044769	1	12207	12207		91.085	53.111	1	14778000			31488	2395	19831	19940	30312	30312					-0.07263111495853991
SSDKSGMIEY	10	Unmodified	_SSDKSGMIEY_					0	0	0		nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	MULTI-MSMS	HCT116MG_D190212_S2	2	559.2682495117188	2	558.747521	1115.48049	0.67679	0.00037816	-0.14251	-7.9628E-05	0.53428	0.00029853	558.7474267896237	33.229	0.31092	33.033	32.86	33.171	-0.196					12	5	3	0	0	0	0.039616	2	12317	12317;12328		94.909	54.227	1	50591000			31489	2395	19831	19940	30313;30314	30313					-0.07263111495853991
SSDKSVKV	8	Unmodified	_SSDKSVKV_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	MULTI-MSMS	HCT116MG_D190212_S1	1	425.2374572753906	2	425.23745	848.460347	0.20719	8.8107E-05	0.29859	0.00012697	0.50579	0.00021508	425.2375604275978	17.646	0.20839	17.646	17.516	17.724	0					5	3	2	0	0	0	0.077918	1	6023	6023		100.09	17.561	1	2660600			31490	3661	19832	19941	30315	30315					0.030055056264814084
SSDKSVKV	8	Unmodified	_SSDKSVKV_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	425.23745	848.460347	-0.16257	-6.9131E-05	0.014464	6.1507E-06	-0.14811	-6.298E-05	425.23740015985777	18.293	0.20904	17.93	17.799	18.008	-0.36325	0.14202	-3.3035E-05	NaN	100.09	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11184000			31491	3661	19832	19941							0.030055056264814084
SSDKYGDTSY	10	Unmodified	_SSDKYGDTSY_					0	0	0		ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	MSMS	HCT116MG_D190212_S1	1	561.7332763671875	2	561.732926	1121.4513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.98	1	22.98	22.48	23.48	0								0	0	0	0.044996	1	8162	8162		111.31	53.838	1				31492	2206	19833	19942	30316	30316					-0.10456932520514783
SSDKYGDTSY	10	Unmodified	_SSDKYGDTSY_					0	0	0		ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	MULTI-MSMS	HCT116MG_D190212_S2	2	561.7330322265625	2	561.732926	1121.4513	0.35461	0.00019919	0.38729	0.00021755	0.7419	0.00041675	561.7329810521325	23.397	0.25872	23.011	22.882	23.141	-0.3852					12	4	4	0	0	0	0.011898	1	8359	8359		139.38	86.061	1	45749000			31493	2206	19833	19942	30317	30317					-0.10456932520514783
SSDKYGDTSY	10	Unmodified	_SSDKYGDTSY_					0	0	0		ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	MULTI-MSMS	HCT116MG_D190212_S3	3	561.73291015625	2	561.732926	1121.4513	0.31105	0.00017473	0.12037	6.7617E-05	0.43143	0.00024235	561.732802999843	22.992	0.26012	22.973	22.844	23.104	-0.018869					7	4	2	0	0	0	0.3449	1	8121	8121		46.475	22.685	1	8204700			31494	2206	19833	19942	30318	30318					-0.10456932520514783
SSDLPQVL	8	Unmodified	_SSDLPQVL_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	HCT116MG_D190212_S3	3	858.4580688476562	1	858.456724	857.449448	0.90206	0.00077438	0.30793	0.00026434	1.21	0.0010387	858.4569404225379	48.445	0.26043	48.129	47.932	48.192	-0.31596					7	4	2	0	0	0	0.060005	1	18234	18234		112.59	15.519	1	3386500			31495	9475	19834	19943	30319	30319					0.015021032521872257
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MSMS	HCT116MG_D190212_S1	1	554.74951171875	2	554.74891	1107.48327	0.4581	0.00025413	-0.27561	-0.0001529	0.18249	0.00010123	554.7486528655897	27.456	0.31032	27.456	27.282	27.592	0					10	5	3	0	0	0	0.00055447	2	9964	9964;10007		185.05	113.92	1	27932000			31496	2143	19835	19944	30320;30321	30320					-0.06617520046711434
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MSMS	HCT116MG_D190212_S2	2	554.7490844726562	2	554.74891	1107.48327	0.32488	0.00018023	0.15698	8.7083E-05	0.48186	0.00026731	554.7489234303058	27.895	0.51448	27.553	27.295	27.81	-0.34201					25	9	4	0	0	0	0.00055447	1	10145	10145		185.05	124.98	1	164780000			31497	2143	19835	19944	30322	30322					-0.06617520046711434
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MSMS	HCT116MG_D190212_S2	2	1108.49072265625	1	1108.49054	1107.48327	0.59803	0.00066291	-0.15771	-0.00017481	0.44032	0.00048809	1108.490051289069	27.89	0.25647	27.548	27.398	27.655	-0.34201					9	4	3	0	0	0	0.00010848	1	10165	10165		195.04	153.2	1	27512000			31498	2143	19835	19944	30323	30323					-0.06617520046711434
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MSMS	HCT116MG_D190212_S3	3	554.7496337890625	2	554.74891	1107.48327	0.52675	0.00029221	-0.1137	-6.3074E-05	0.41305	0.00022914	554.7488193038259	27.783	0.52017	27.595	27.413	27.933	-0.18847					20	9	3	0	0	0	0.0014132	1	10015	10015		176.84	105.7	1	80278000			31499	2143	19835	19944	30324	30324					-0.06617520046711434
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		nc|ENSG00000108021|Q5VWN6-2|TASOR2;ENSG00000108021|ENST00000695737|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	nc|ENSG00000108021|Q5VWN6-2|TASOR2	MULTI-MSMS	HCT116MG_D190212_S4	4	554.7489013671875	2	554.74891	1107.48327	0.41127	0.00022815	-0.042969	-2.3837E-05	0.3683	0.00020432	554.7488264125891	27.953	0.41566	27.632	27.45	27.866	-0.32157					16	7	3	0	0	0	1.848E-07	1	10032	10032		215.27	144.14	1	27226000			31500	2143	19835	19944	30325	30325					-0.06617520046711434
SSDNIMVQY	9	Oxidation (M)	_SSDNIM(Oxidation (M))VQY_		SSDNIM(1)VQY		SSDNIM(86)VQY	0	0	1		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	536.73486328125	2	536.734414	1071.45428	0.55826	0.00029964	0.098774	5.3015E-05	0.65703	0.00035265	536.7344174049173	35.816	0.26004	35.816	35.682	35.942	0					12	4	3	0	0	0	0.030723	1	13338	13338		85.642	55.005	1	21174000			31501	5641;4383	19836	19945	30326	30326		96			-0.07859380667332516
SSDNIMVQY	9	Oxidation (M)	_SSDNIM(Oxidation (M))VQY_		SSDNIM(1)VQY		SSDNIM(160)VQY	0	0	1		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	1072.4620361328125	1	1072.46155	1071.45428	0.81876	0.00087809	-0.22167	-0.00023773	0.59709	0.00064036	1072.4606871433193	35.811	0.26004	35.811	35.682	35.942	0					6	4	2	0	0	0	0.0034906	1	13357	13357		158.2	107.35	1	10387000			31502	5641;4383	19836	19945	30327	30327		96			-0.07859380667332516
SSDNIMVQY	9	Oxidation (M)	_SSDNIM(Oxidation (M))VQY_		SSDNIM(1)VQY		SSDNIM(140)VQY	0	0	1		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S2	2	1072.4627685546875	1	1072.46155	1071.45428	0.89492	0.00095977	-0.5646	-0.00060552	0.33032	0.00035425	1072.4610081432602	35.877	0.20618	35.749	35.658	35.864	-0.12799					6	3	2	0	0	0	0.0044301	1	13427	13427		144.35	104.39	1	12539000			31503	5641;4383	19836	19945	30328	30328		96			-0.07859380667332516
SSDNIMVQY	9	Oxidation (M)	_SSDNIM(Oxidation (M))VQY_		SSDNIM(1)VQY		SSDNIM(110)VQY	0	0	1		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	536.7349853515625	2	536.734414	1071.45428	0.18611	9.9893E-05	0.47967	0.00025746	0.66578	0.00035735	536.7346780882541	36.056	0.36391	35.755	35.574	35.938	-0.30042					11	6	2	0	0	0	0.012496	1	13319	13319		107.19	65.347	1	10631000			31504	5641;4383	19836	19945	30329	30329		96			-0.07859380667332516
SSDNIMVQY	9	Oxidation (M)	_SSDNIM(Oxidation (M))VQY_					0	0	1		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1072.46155	1071.45428	0.24018	0.00025758	0.32826	0.00035204	0.56844	0.00060963	1072.4616630735195	36.056	0.2597	35.755	35.574	35.834	-0.30042	-0.016475	0.00032799	NaN	158.2	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3575200			31505	5641;4383	19836	19945				96			-0.07859380667332516
SSDNIMVQY	9	Unmodified	_SSDNIMVQY_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	529.3381958007812	2	528.736957	1055.45936	0.36385	0.00019238	0.062795	3.3202E-05	0.42664	0.00022558	528.7368767009822	42.045	0.57306	42.045	41.602	42.175	0					19	10	3	0	0	0	0.0035731	1	15821	15821		174.73	122.46	1	48988000			31506	5641;4383	19836	19946	30330	30330					-0.06615076804723685
SSDNIMVQY	9	Unmodified	_SSDNIMVQY_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	1056.469482421875	1	1056.46664	1055.45936	0.77837	0.00082232	-0.27385	-0.00028931	0.50452	0.00053301	1056.466400810201	42.045	0.31294	42.045	41.862	42.175	0					11	5	3	0	0	0	0.0035731	1	15844	15844		174.73	124.79	1	71206000			31507	5641;4383	19836	19946	30331	30331					-0.06615076804723685
SSDNIMVQY	9	Unmodified	_SSDNIMVQY_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S2	2	1056.4674072265625	1	1056.46664	1055.45936	0.6188	0.00065374	-0.1045	-0.0001104	0.51429	0.00054333	1056.4668428926389	42.058	0.62231	41.99	41.601	42.223	-0.068199					20	11	4	0	0	0	0.0034906	1	15912	15912		158.2	99.524	1	105120000			31508	5641;4383	19836	19946	30332	30332					-0.06615076804723685
SSDNIMVQY	9	Unmodified	_SSDNIMVQY_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	1056.46728515625	1	1056.46664	1055.45936	0.69382	0.00073299	-0.084025	-8.8769E-05	0.60979	0.00064422	1056.466544162676	42.317	0.41705	42.013	41.832	42.249	-0.30352					12	7	2	0	0	0	0.0034906	3	15762	15732;15762;15839		158.2	103.2	1	20176000			31509	5641;4383	19836	19946	30333;30334;30335	30334					-0.06615076804723685
SSDNIMVQY	9	Unmodified	_SSDNIMVQY_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S3	3	528.7368774414062	2	528.736957	1055.45936	0.49969	0.0002642	0.025225	1.3337E-05	0.52491	0.00027754	528.7368436690145	42.317	0.67719	42.013	41.624	42.301	-0.30352					23	12	3	0	0	0	0.0034365	1	15758	15758		160.52	92.435	1	28642000			31510	5641;4383	19836	19946	30336	30336					-0.06615076804723685
SSDNIMVQY	9	Unmodified	_SSDNIMVQY_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MSMS	HCT116MG_D190212_S4	4	528.7373046875	2	528.736957	1055.45936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.38	1	42.004	41.504	42.504	-0.37565								0	0	0	0.0070915	1	15574	15574		111.29	69.192	1				31511	5641;4383	19836	19946	30337	30337					-0.06615076804723685
SSDNSGQTRY	10	Unmodified	_SSDNSGQTRY_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;ARHGEF5|p.A447Qfs*7|1|0.08|ENSG00000050327|chr7:144364003-144364003|C/-|frameshift_variant;ENSG00000213214|ENST00000378115|ARHGEF35	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	HCT116MG_D190212_S1	1	557.7413330078125	2	557.741616	1113.46868	0.60301	0.00033632	-0.42755	-0.00023846	0.17547	9.7864E-05	557.7413178730957	17.228	0.26071	17.228	17.098	17.359	0					10	4	3	0	0	0	3.8937E-11	1	5856	5856		230.41	108.23	1	9656000			31512	1050	19837	19947	30338	30338					-0.0835159219484467
SSDNSGQTRY	10	Unmodified	_SSDNSGQTRY_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;ARHGEF5|p.A447Qfs*7|1|0.08|ENSG00000050327|chr7:144364003-144364003|C/-|frameshift_variant;ENSG00000213214|ENST00000378115|ARHGEF35	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	HCT116MG_D190212_S2	2	557.7417602539062	2	557.741616	1113.46868	0.35975	0.00020065	-0.025912	-1.4452E-05	0.33384	0.0001862	557.7415745535857	17.662	0.41773	17.306	17.127	17.545	-0.35647					15	7	3	0	0	0	1.5235E-24	1	6027	6027		260.19	138.01	1	36974000			31513	1050	19837	19947	30339	30339					-0.0835159219484467
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	527.7381591796875	2	527.738011	1053.46147	0.45875	0.0002421	0.045189	2.3848E-05	0.50394	0.00026595	527.7380118740762	35.599	0.46567	35.599	35.371	35.837	0					18	8	3	0	0	0	0.0066829	1	13225	13225		163.04	96.579	1	28712000			31514	2277	19838	19948	30340	30340					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1054.469970703125	1	1054.46875	1053.46147	0.91587	0.00096575	0.87917	0.00092705	1.795	0.0018928	1054.4690070348772	35.571	0.51791	35.571	35.215	35.733	0					13	9	2	0	0	0	0.021434	1	13245	13245		117.76	48.656	1	12885000			31515	2277	19838	19948	30341	30341					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.7379760742188	2	527.738011	1053.46147	0.52766	0.00027847	-0.025374	-1.3391E-05	0.50229	0.00026508	527.7379664790277	35.704	0.66452	35.561	35.237	35.901	-0.14245					34	12	4	0	0	0	0.00081686	1	13268	13268		179.17	112.72	1	243100000			31516	2277	19838	19948	30342	30342					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1054.469970703125	1	1054.46875	1053.46147	0.72776	0.0007674	0.16207	0.00017089	0.88983	0.00093829	1054.4687945119263	35.658	0.51402	35.515	35.283	35.797	-0.14245					24	9	3	0	0	0	0.017735	1	13276	13276		125.53	59.072	1	151410000			31517	2277	19838	19948	30343	30343					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	527.7384643554688	2	527.738011	1053.46147	0.50914	0.00026869	-0.062059	-3.2751E-05	0.44708	0.00023594	527.7378941225734	35.863	0.70218	35.563	35.288	35.99	-0.30042					46	19	4	0	0	0	0.005658	2	13146	13146;13380		165.72	105.65	1	179310000			31518	2277	19838	19948	30344;30345	30344					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1055.47314453125	1	1054.46875	1053.46147	0.7029	0.00074119	0.11015	0.00011615	0.81306	0.00085734	1054.4687842304447	35.834	0.54922	35.533	35.336	35.886	-0.30042					30	13	3	0	0	0	0.13161	1	13164	13164		67.838	35.533	1	57564000			31519	2277	19838	19948	30346	30346					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1054.4691162109375	1	1054.46875	1053.46147	0.83937	0.00088509	-0.3327	-0.00035083	0.50667	0.00053426	1054.4684205533208	35.903	0.42844	35.517	35.344	35.773	-0.38606					27	13	3	0	0	0	0.015946	1	13076	13076		129.77	71.094	1	15991000			31520	2277	19838	19948	30347	30347					-0.06312324795271707
SSDPDQLVY	9	Unmodified	_SSDPDQLVY_					0	0	0		ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant;ITGA7|p.G397Vfs*7|1|0.24|ENSG00000135424|chr12:55698517-55698517|C/-|frameshift_variant;ITGA7|p.A398Cfs*25|1|0.32|ENSG00000135424|chr12:55698516-55698517|-/C|frameshift_variant;ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1023.4630126953125	1	1023.46293	1022.45566	0.63967	0.00065467	-0.82491	-0.00084427	-0.18525	-0.00018959	1023.4623153825742	40.078	0.25931	40.078	39.917	40.176	0					7	4	2	0	0	0	0.035349	1	15048	15048		81.89	15.434	1	11159000			31521	3348	19839	19949	30348	30348					-0.05467423306959063
SSDPDQLVY	9	Unmodified	_SSDPDQLVY_					0	0	0		ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant;ITGA7|p.G397Vfs*7|1|0.24|ENSG00000135424|chr12:55698517-55698517|C/-|frameshift_variant;ITGA7|p.A398Cfs*25|1|0.32|ENSG00000135424|chr12:55698516-55698517|-/C|frameshift_variant;ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1024.4654541015625	1	1023.46293	1022.45566	0.63193	0.00064676	-0.187	-0.00019139	0.44493	0.00045537	1023.4626627716666	40.148	0.36397	40.076	39.894	40.258	-0.072838					17	6	4	0	0	0	0.063511	1	15125	15125		68.081	33.679	1	109850000			31522	3348	19839	19949	30349	30349					-0.05467423306959063
SSDPDQLVY	9	Unmodified	_SSDPDQLVY_					0	0	0		ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant;ITGA7|p.G397Vfs*7|1|0.24|ENSG00000135424|chr12:55698517-55698517|C/-|frameshift_variant;ITGA7|p.A398Cfs*25|1|0.32|ENSG00000135424|chr12:55698516-55698517|-/C|frameshift_variant;ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1023.46337890625	1	1023.46293	1022.45566	0.54709	0.00055993	0.10227	0.00010467	0.64936	0.0006646	1023.4629355069724	40.356	0.5729	40.055	39.851	40.423	-0.30161					29	10	4	0	0	0	0.030723	1	14959	14959		85.642	25.568	1	81462000			31523	3348	19839	19949	30350	30350					-0.05467423306959063
SSDPDQLVY	9	Unmodified	_SSDPDQLVY_					0	0	0		ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant;ITGA7|p.G397Vfs*7|1|0.24|ENSG00000135424|chr12:55698517-55698517|C/-|frameshift_variant;ITGA7|p.A398Cfs*25|1|0.32|ENSG00000135424|chr12:55698516-55698517|-/C|frameshift_variant;ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	512.2354736328125	2	512.235104	1022.45566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.364	1	40.062	39.562	40.562	-0.30161								0	0	0	0.034673	1	14982	14982		78.149	20.678	1				31524	3348	19839	19949	30351	30351					-0.05467423306959063
SSDPDQLVY	9	Unmodified	_SSDPDQLVY_					0	0	0		ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant;ITGA7|p.G397Vfs*7|1|0.24|ENSG00000135424|chr12:55698517-55698517|C/-|frameshift_variant;ITGA7|p.A398Cfs*25|1|0.32|ENSG00000135424|chr12:55698516-55698517|-/C|frameshift_variant;ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000553276.1_1_12:56093317-56093771:-|nuORF	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1023.46435546875	1	1023.46293	1022.45566	0.63702	0.00065197	-0.045136	-4.6195E-05	0.59188	0.00060577	1023.4628937878939	40.443	0.47231	40.065	39.865	40.338	-0.37828					21	9	3	0	0	0	0.035349	1	14824	14824		81.89	24.168	1	23621000			31525	3348	19839	19949	30352	30352					-0.05467423306959063
SSDPFLNSGTY	11	Unmodified	_SSDPFLNSGTY_					0	0	0		nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1;nc|ENSG00000137693|P46937-4|YAP1	nc|ENSG00000137693|P46937-5|YAP1	nc|ENSG00000137693|P46937-5|YAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1187.52197265625	1	1187.52151	1186.51423	0.46542	0.0005527	-0.30458	-0.00036169	0.16084	0.000191	1187.5213895375018	46.344	0.30994	46.233	46.059	46.369	-0.11122					10	5	3	0	0	0	3.2899E-10	1	17668	17668		205.91	123.38	1	18064000			31526	3494	19840	19950	30353	30353					-0.07156366732465358
SSDPFLNSGTY	11	Unmodified	_SSDPFLNSGTY_					0	0	0		nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1;nc|ENSG00000137693|P46937-4|YAP1	nc|ENSG00000137693|P46937-5|YAP1	nc|ENSG00000137693|P46937-5|YAP1	MSMS	HCT116MG_D190212_S2	2	594.2647094726562	2	594.264393	1186.51423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.429	1	46.318	45.818	46.818	-0.11121								0	0	0	0.3401	1	17684	17684		55.235	38.122	1				31527	3494	19840	19950	30354	30354					-0.07156366732465358
SSDPFLNSGTY	11	Unmodified	_SSDPFLNSGTY_					0	0	0		nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1;nc|ENSG00000137693|P46937-4|YAP1	nc|ENSG00000137693|P46937-5|YAP1	nc|ENSG00000137693|P46937-5|YAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	594.2645874023438	2	594.264393	1186.51423	0.81919	0.00048682	-0.089139	-5.2972E-05	0.73006	0.00043385	594.2642156855106	46.508	0.26038	46.195	46.075	46.335	-0.31238					8	4	2	0	0	0	0.01869	1	17458	17458		132.38	99.594	1	3229100			31528	3494	19840	19950	30355	30355					-0.07156366732465358
SSDPFLNSGTY	11	Unmodified	_SSDPFLNSGTY_					0	0	0		nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1;nc|ENSG00000137693|P46937-4|YAP1	nc|ENSG00000137693|P46937-5|YAP1	nc|ENSG00000137693|P46937-5|YAP1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	594.264393	1186.51423	0.61161	0.00036346	-0.49407	-0.00029361	0.11754	6.985E-05	594.7653984120819	46.324	0.30959	46.212	46.008	46.317	-0.11122	0.0085831	-0.00034854	NaN	132.38	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13589000			31529	3494	19840	19950							-0.07156366732465358
SSDPQAQKY	9	Unmodified	_SSDPQAQKY_					0	0	0		HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant;ENSG00000187522|ENST00000378372|HSPA14	HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant	HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2410888671875	2	512.240721	1022.46689	0.3341	0.00017114	-0.14514	-7.4348E-05	0.18896	9.6792E-05	512.2407553614102	18.48	0.31239	18.48	18.298	18.61	0					10	5	3	0	0	0	0.0050238	1	6359	6359		137.42	74.851	1	4139100			31530	5939	19841	19951	30356	30356					-0.04344601212812904
SSDPQAQKY	9	Unmodified	_SSDPQAQKY_					0	0	0		HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant;ENSG00000187522|ENST00000378372|HSPA14	HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant	HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	512.2412109375	2	512.240721	1022.46689	0.056554	2.8969E-05	0.64635	0.00033109	0.70291	0.00036006	512.2408423637966	18.971	0.36508	18.601	18.471	18.836	-0.3695					11	6	3	0	0	0	0.0012137	1	6556	6556		191.38	106.11	1	32427000			31531	5939	19841	19951	30357	30357					-0.04344601212812904
SSDPQAQKY	9	Unmodified	_SSDPQAQKY_					0	0	0		HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant;ENSG00000187522|ENST00000378372|HSPA14	HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant	HSPA14|p.N95Mfs*8|2|0.47|ENSG00000187522|chr10:14848797-14848797|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	512.2404174804688	2	512.240721	1022.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.165	1	18.241	17.741	18.741	0.076334								0	0	0	0.0019432	1	6151	6151		125.53	62.956	1				31532	5939	19841	19951	30358	30358					-0.04344601212812904
SSDPRDIDQD	10	Unmodified	_SSDPRDIDQD_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ATN1|p.P255Hfs*43|3|0.56|ENSG00000111676|chr12:6936026-6936026|C/-|frameshift_variant;ATN1|p.G319Wfs*61|1|0.16|ENSG00000111676|chr12:6936215-6936216|-/C|frameshift_variant;ATN1|p.H410Tfs*43|1|0.46|ENSG00000111676|chr12:6936491-6936491|C/-|frameshift_variant	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	HCT116MG_D190212_S2	2	383.1668395996094	3	383.166913	1146.47891	0.058934	2.2582E-05	0.70188	0.00026894	0.76082	0.00029152	383.16713428643214	22.293	0.36342	21.907	21.739	22.103	-0.3852					12	6	3	0	0	0	0.64492	1	7893	7893		17.049	2.2107	1	14685000			31533	2307	19842	19952	30359	30359					-0.0884702926027785
SSDPRDIDQD	10	Unmodified	_SSDPRDIDQD_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ATN1|p.P255Hfs*43|3|0.56|ENSG00000111676|chr12:6936026-6936026|C/-|frameshift_variant;ATN1|p.G319Wfs*61|1|0.16|ENSG00000111676|chr12:6936215-6936216|-/C|frameshift_variant;ATN1|p.H410Tfs*43|1|0.46|ENSG00000111676|chr12:6936491-6936491|C/-|frameshift_variant	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	HCT116MG_D190212_S3	3	574.2471923828125	2	574.246731	1146.47891	0.41247	0.00023686	0.45641	0.00026209	0.86888	0.00049895	574.2470244369624	21.49	0.31763	21.509	21.377	21.694	0.018446					10	5	3	0	0	0	0.19283	1	7502	7502		60.074	4.5712	1	8312600			31534	2307	19842	19952	30360	30360					-0.0884702926027785
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A216Pfs*6|2|0.26|ENSG00000087087|chr7:100884123-100884123|G/-|frameshift_variant;SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	HCT116MG_D190212_S1	1	506.7041015625	2	506.703971	1011.39339	0.32083	0.00016256	-0.026604	-1.3481E-05	0.29422	0.00014908	506.7038732634593	23.496	0.47007	23.496	23.262	23.732	0					22	8	4	0	0	0	0.004194	1	8350	8350		147.83	69.847	1	72489000			31535	1478	19843	19953	30361	30361					-0.11185149655273108
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A216Pfs*6|2|0.26|ENSG00000087087|chr7:100884123-100884123|G/-|frameshift_variant;SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	HCT116MG_D190212_S1	1	1012.4013671875	1	1012.40067	1011.39339	0.81526	0.00082537	0.048704	4.9308E-05	0.86396	0.00087468	1012.4003592208319	23.497	0.31318	23.497	23.314	23.627	0					11	5	3	0	0	0	0.0035556	1	8372	8372		172.91	111.55	1	11022000			31536	1478	19843	19953	30362	30362					-0.11185149655273108
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A216Pfs*6|2|0.26|ENSG00000087087|chr7:100884123-100884123|G/-|frameshift_variant;SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	HCT116MG_D190212_S2	2	506.7041320800781	2	506.703971	1011.39339	0.59385	0.00030091	-0.18465	-9.3563E-05	0.4092	0.00020734	506.70383001623804	23.969	0.5724	23.586	23.351	23.923	-0.38324					31	10	4	0	0	0	0.004194	1	8536	8536		147.83	69.847	1	267460000			31537	1478	19843	19953	30363	30363					-0.11185149655273108
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A216Pfs*6|2|0.26|ENSG00000087087|chr7:100884123-100884123|G/-|frameshift_variant;SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	HCT116MG_D190212_S2	2	1012.4004516601562	1	1012.40067	1011.39339	0.84821	0.00085872	0.047719	4.8311E-05	0.89592	0.00090703	1012.4005313068958	23.969	0.41556	23.586	23.403	23.819	-0.38324					16	7	3	0	0	0	0.0035556	1	8559	8559		172.91	111.55	1	50589000			31538	1478	19843	19953	30364	30364					-0.11185149655273108
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A216Pfs*6|2|0.26|ENSG00000087087|chr7:100884123-100884123|G/-|frameshift_variant;SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	HCT116MG_D190212_S3	3	506.70458984375	2	506.703971	1011.39339	0.28162	0.0001427	0.16008	8.1112E-05	0.4417	0.00022381	506.70395463695456	23.565	0.57326	23.525	23.291	23.865	-0.03968					28	10	4	0	0	0	0.0035417	1	8293	8293		171.47	93.483	1	46148000			31539	1478	19843	19953	30365	30365					-0.11185149655273108
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A216Pfs*6|2|0.26|ENSG00000087087|chr7:100884123-100884123|G/-|frameshift_variant;SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	HCT116MG_D190212_S3	3	1012.40087890625	1	1012.40067	1011.39339	0.6179	0.00062557	-0.15382	-0.00015572	0.46409	0.00046984	1012.4002913832219	23.617	0.31264	23.578	23.343	23.656	-0.03968					9	5	2	0	0	0	0.0035556	1	8339	8339		172.91	111.55	1	3069300			31540	1478	19843	19953	30366	30366					-0.11185149655273108
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.A216Pfs*6|2|0.26|ENSG00000087087|chr7:100884123-100884123|G/-|frameshift_variant;SRRT|p.F750Lfs*32|1|0.12|ENSG00000087087|chr7:100887778-100887778|T/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	HCT116MG_D190212_S4	4	507.25445556640625	2	506.703971	1011.39339	0.2237	0.00011335	0.046185	2.3402E-05	0.26988	0.00013675	506.7039603286018	23.857	0.41598	23.599	23.365	23.781	-0.25816					11	7	2	0	0	0	0.13706	2	8394	8364;8394		50.855	27.707	1	8612800			31541	1478	19843	19953	30367;30368	30368					-0.11185149655273108
SSDQPLTV	8	Unmodified	_SSDQPLTV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	HCT116MG_D190212_S3	3	846.4195556640625	1	846.420339	845.413062	0.36493	0.00030888	-0.18737	-0.00015859	0.17756	0.00015029	846.4198710422032	36.212	0.26007	35.912	35.781	36.042	-0.30042					8	4	2	0	0	0	0.052582	1	13411	13411		120.45	15.651	1	4000800			31542	1495	19844	19954	30369	30369					-0.015827736445316987
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	HCT116MG_D190212_S1	1	554.2670288085938	2	553.764894	1105.51524	0.51327	0.00028423	-0.032026	-1.7735E-05	0.48124	0.0002665	553.7648198651239	21.359	0.36891	21.359	21.173	21.542	0					9	6	2	0	0	0	0.028026	2	7503	7503;7528		88.364	34.96	1	51373000			31543	4198	19845	19955	30370;30371	30370					-0.033301075729013974
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MSMS	HCT116MG_D190212_S1	1	369.5121765136719	3	369.512355	1105.51524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.369	1	21.369	20.869	21.869	0								0	0	0	0.22299	1	7513	7513		35.612	15.625	1				31544	4198	19845	19955	30372	30372					-0.033301075729013974
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7649536132812	2	553.764894	1105.51524	0.22724	0.00012584	0.27273	0.00015103	0.49996	0.00027686	553.7649929034856	21.942	0.52086	21.557	21.323	21.844	-0.38503					21	9	5	0	0	0	0.0052024	1	7738	7738		135.86	74.262	1	224670000			31545	4198	19845	19955	30373	30373					-0.033301075729013974
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	HCT116MG_D190212_S2	2	369.51220703125	3	369.512355	1105.51524	-0.32341	-0.00011951	0.22409	8.2804E-05	-0.099326	-3.6702E-05	369.51233374640873	21.936	0.31272	21.551	21.427	21.739	-0.38503					10	5	3	0	0	0	0.16306	1	7749	7749		42.312	11.881	1	32640000			31546	4198	19845	19955	30374	30374					-0.033301075729013974
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	HCT116MG_D190212_S2	2	1106.5234375	1	1106.52251	1105.51524	0.50475	0.00055852	0.075728	8.3794E-05	0.58048	0.00064231	1106.5226942317827	21.942	0.26051	21.557	21.375	21.635	-0.38503					9	4	3	0	0	0	0.0052024	1	7754	7754		135.86	74.262	1	17844000			31547	4198	19845	19955	30375	30375					-0.033301075729013974
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	HCT116MG_D190212_S3	3	553.765625	2	553.764894	1105.51524	0.27734	0.00015358	0.56255	0.00031152	0.83989	0.0004651	554.2666379873763	21.122	0.6298	21.157	20.975	21.604	0.034473					16	11	3	0	0	0	0.028026	1	7351	7351		88.364	49.749	1	13053000			31548	4198	19845	19955	30376	30376					-0.033301075729013974
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	369.512355	1105.51524	-0.21803	-8.0563E-05	0.34713	0.00012827	0.1291	4.7705E-05	369.5124611708147	21.122	0.20813	21.157	21.027	21.235	0.034473	-0.19735	9.135E-05	NaN	42.312	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5097900			31549	4198	19845	19955							-0.033301075729013974
SSDRTITEY	9	Unmodified	_SSDRTITEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	HCT116MG_D190212_S1	1	536.2515869140625	2	536.251286	1070.48802	0.40713	0.00021832	0.1005	5.3891E-05	0.50762	0.00027221	536.2512001348131	27.43	0.31032	27.43	27.282	27.592	0					7	5	2	0	0	0	0.019537	1	9968	9968		96.936	40.758	1	17897000			31550	1748	19846	19956	30377	30377					-0.04440635903961265
SSDRTITEY	9	Unmodified	_SSDRTITEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	HCT116MG_D190212_S2	2	536.2509765625	2	536.251286	1070.48802	0.46804	0.00025099	0.04545	2.4373E-05	0.51349	0.00027536	536.2511779753222	27.905	0.35992	27.563	27.398	27.758	-0.34201					13	6	3	0	0	0	0.0059958	1	10153	10153		128.93	72.755	1	60308000			31551	1748	19846	19956	30378	30378					-0.04440635903961265
SSDRTITEY	9	Unmodified	_SSDRTITEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2518310546875	2	536.251286	1070.48802	0.58899	0.00031585	0.19279	0.00010338	0.78179	0.00041923	536.2513655617727	27.781	0.36389	27.593	27.413	27.777	-0.18847					15	6	3	0	0	0	0.012531	1	10029	10029		107.1	59.351	1	16571000			31552	1748	19846	19956	30379	30379					-0.04440635903961265
SSDRTITEY	9	Unmodified	_SSDRTITEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	HCT116MG_D190212_S3	3	536.25146484375	2	536.251286	1070.48802	0.52249	0.00028019	-0.10105	-5.4188E-05	0.42144	0.000226	536.2511835183682	35.759	0.39347	35.46	35.389	35.783	-0.29922					13	8	2	0	0	0	0.24195	1	13301	13301		7.9102	0	1	5194700			31553	1748	19846	19956	30380	30380					-0.04440635903961265
SSDRTITEY	9	Unmodified	_SSDRTITEY_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	HCT116MG_D190212_S4	4	536.2510986328125	2	536.251286	1070.48802	0.44258	0.00023733	-0.23842	-0.00012785	0.20416	0.00010948	536.2508615984311	27.999	0.15577	27.678	27.554	27.71	-0.32157					6	2	3	0	0	0	0.28785	1	10056	10056		32.037	10.501	1	4636100			31554	1748	19846	19956	30381	30381					-0.04440635903961265
SSDSCCCCCC	10	Unmodified	_SSDSCCCCCC_					0	0	0			REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	MSMS	HCT116MG_D190212_S2	2	507.0838928222656	2	507.101626	1012.1887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4804	1	5.3322	4.8322	5.8322	-0.14816								0	0	0	0.97116	1	1731	1731		0	0	1		+		31555	16318	19847	19957	30382	30382					-0.3169069871149759
SSDSCCCCCC	10	Unmodified	_SSDSCCCCCC_					0	0	0			REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	MSMS	HCT116MG_D190212_S2	2	507.0665283203125	2	507.101626	1012.1887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8512	1	9.5864	9.0864	10.086	-0.26472								0	0	0	0.97116	1	3092	3092		0	0	1		+		31556	16318	19847	19957	30383	30383					-0.3169069871149759
SSDSCCCCCC	10	Unmodified	_SSDSCCCCCC_					0	0	0			REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF	MSMS	HCT116MG_D190212_S4	4	507.0838928222656	2	507.101626	1012.1887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.816	1	63.577	63.077	64.077	-0.2389								0	0	0	0.97116	1	24050	24050		0	0	1		+		31557	16318	19847	19957	30384	30384					-0.3169069871149759
SSDSGFSNY	9	Unmodified	_SSDSGFSNY_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000525371.1_1_8:145542526-145550314:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MULTI-MSMS	HCT116MG_D190212_S2	2	963.3694458007812	1	963.369031	962.361755	0.68607	0.00066094	-0.26404	-0.00025437	0.42204	0.00040658	963.3681771440306	32.771	0.20789	32.56	32.43	32.638	-0.21135					5	3	2	0	0	0	0.0063744	1	12155	12155		125.62	70.851	1	24986000			31558	5797	19848	19958	30385	30385					-0.12093142409230495
SSDSHNSGRRS	11	Unmodified	_SSDSHNSGRRS_					0	0	0		TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant;TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;ENSG00000100354|ENST00000454349|TNRC6B;TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant;TNRC6B|p.N758Tfs*34|1|0.18|ENSG00000100354|chr22:40266498-40266498|A/-|frameshift_variant;TNRC6B|p.E751Rfs*41|1|0.08|ENSG00000100354|chr22:40266476-40266476|G/-|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	595.2693481445312	2	595.268864	1188.52317	0.66464	0.00039564	-0.012305	-7.3247E-06	0.65234	0.00038832	595.2686313336102	36.829	0.36121	36.715	36.55	36.912	-0.11478					14	6	4	0	0	0	0.44062	1	13802	13802		51.415	17.014	1	27086000			31559	1696	19849	19959	30386	30386					-0.06354580323431946
SSDSHNSGRRS	11	Unmodified	_SSDSHNSGRRS_					0	0	0		TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant;TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;ENSG00000100354|ENST00000454349|TNRC6B;TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant;TNRC6B|p.N758Tfs*34|1|0.18|ENSG00000100354|chr22:40266498-40266498|A/-|frameshift_variant;TNRC6B|p.E751Rfs*41|1|0.08|ENSG00000100354|chr22:40266476-40266476|G/-|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	595.2693481445312	2	595.268864	1188.52317	0.60925	0.00036267	0.6967	0.00041473	1.306	0.00077739	595.2689883832587	37.075	0.57235	36.774	36.561	37.133	-0.30127					16	10	3	0	0	0	0.57136	1	13728	13728		38.615	5.8291	1	7102300			31560	1696	19849	19959	30387	30387					-0.06354580323431946
SSDSHNSGRRS	11	Unmodified	_SSDSHNSGRRS_					0	0	0		TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant;TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;ENSG00000100354|ENST00000454349|TNRC6B;TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant;TNRC6B|p.N758Tfs*34|1|0.18|ENSG00000100354|chr22:40266498-40266498|A/-|frameshift_variant;TNRC6B|p.E751Rfs*41|1|0.08|ENSG00000100354|chr22:40266476-40266476|G/-|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	595.2687377929688	2	595.268864	1188.52317	0.88503	0.00052683	-0.10877	-6.4746E-05	0.77626	0.00046208	595.2688847656615	37.232	0.33678	36.849	36.64	36.977	-0.3839					8	6	2	0	0	0	0.69168	1	13663	13663		24.882	9.0344	1	5463500			31561	1696	19849	19959	30388	30388					-0.06354580323431946
SSDSHNSGRRS	11	Unmodified	_SSDSHNSGRRS_					0	0	0		TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant;TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;ENSG00000100354|ENST00000454349|TNRC6B;TNRC6B|p.Y593Tfs*16|1|0.8|ENSG00000100354|chr22:40266006-40266006|G/-|frameshift_variant;TNRC6B|p.N758Tfs*34|1|0.18|ENSG00000100354|chr22:40266498-40266498|A/-|frameshift_variant;TNRC6B|p.E751Rfs*41|1|0.08|ENSG00000100354|chr22:40266476-40266476|G/-|frameshift_variant;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	595.268864	1188.52317	0.88503	0.00052683	-0.10877	-6.4746E-05	0.77626	0.00046208	595.2688847656615	37.232	0.33678	36.849	36.64	36.977	-0.3839	0.069536	-0.00024224	NaN	51.415	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5463500			31562	1696	19849	19959							-0.06354580323431946
SSDSPASAF	9	Unmodified	_SSDSPASAF_					0	0	0		AluSx3_dup29942|chr19:41728513-41728808:+|2.044018751923101|0.0786573993334847|4.7|480.0|15|3|anti-sense;AluSp_dup48944|chr21:8406155-8406395:-|1.560712430635823|0.3319044745033751|2.23|450.0|7|1|anti-sense;nc|ENSG00000168386|Q4L180-4|FILIP1L	AluSx3_dup29942|chr19:41728513-41728808:+|2.044018751923101|0.0786573993334847|4.7|480.0|15|3|anti-sense	AluSx3_dup29942|chr19:41728513-41728808:+|2.044018751923101|0.0786573993334847|4.7|480.0|15|3|anti-sense	MULTI-MSMS	HCT116MG_D190212_S3	3	868.3698120117188	1	868.368303	867.361027	0.50197	0.00043589	0.37838	0.00032857	0.88035	0.00076447	868.3686642448466	36.056	0.36391	35.755	35.574	35.938	-0.30042					11	6	3	0	0	0	0.007119	1	13342	13342		120.45	35.094	1	4199800			31563	107	19850	19960	30389	30389					-0.07795937058278923
SSDSTHVTFY	10	Unmodified	_SSDSTHVTFY_					0	0	0		ENSG00000091039|ENST00000261183|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;OSBPL8|p.F644Lfs*25|1|0.34|ENSG00000091039|chr12:76371570-76371570|A/-|frameshift_variant;OSBPL8|p.V285I|1|0.3|ENSG00000091039|chr12:76392657-76392657|C/T|missense_variant;ENST00000550865.1_1_12:76784181-76788455:-|nuORF	ENSG00000091039|ENST00000261183|OSBPL8	ENSG00000091039|ENST00000261183|OSBPL8	MULTI-MSMS	HCT116MG_D190212_S1	1	572.2513427734375	2	572.251286	1142.48802	0.63658	0.00036428	-0.087074	-4.9828E-05	0.5495	0.00031445	572.2513799612017	37.327	0.24929	37.327	37.197	37.447	0					6	4	2	0	0	0	0.1448	2	13967	13902;13967		65.235	36.748	1	11614000			31564	1551	19851	19961	30390;30391	30391					-0.07752635903921146
SSDSVGGFRY	10	Unmodified	_SSDSVGGFRY_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	HCT116MG_D190212_S1	1	537.7464599609375	2	537.74617	1073.47779	0.55302	0.00029739	-0.036601	-1.9682E-05	0.51642	0.0002777	537.7460894692929	37.687	0.36467	37.687	37.499	37.863	0					14	6	3	0	0	0	0.0092896	1	14089	14089		152.89	83.781	1	56799000			31565	2378	19852	19962	30392	30392					-0.056011988384852884
SSDSVGGFRY	10	Unmodified	_SSDSVGGFRY_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7462158203125	2	537.74617	1073.47779	0.25961	0.0001396	0.15685	8.4344E-05	0.41645	0.00022395	537.746205722059	37.77	0.41163	37.666	37.486	37.898	-0.10318					19	7	4	0	0	0	0.00018636	1	14149	14149		193.29	114.57	1	239980000			31566	2378	19852	19962	30393	30393					-0.056011988384852884
SSDSVGGFRY	10	Unmodified	_SSDSVGGFRY_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-SECPEP	HCT116MG_D190212_S2	2	1074.488037109375	1	1074.48506	1073.47779	0.26506	0.0002848	1.2293	0.0013209	1.4944	0.0016057	1074.486730222822	37.77	0.20554	37.666	37.537	37.743	-0.10318					5	3	2	0	0	0	0.073484	1	14198	14198		110.55	58.923	1	20600000			31567	2378	19852	19962	30394	30394					-0.056011988384852884
SSDSVGGFRY	10	Unmodified	_SSDSVGGFRY_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.248046875	2	537.74617	1073.47779	0.56815	0.00030552	-0.57168	-0.00030742	-0.0035328	-1.8997E-06	537.7456077485984	37.932	0.23665	37.631	37.545	37.781	-0.30137					22	9	3	0	0	0	0.01069	1	14021	14021		145.13	66.402	1	32507000			31568	2378	19852	19962	30395	30395					-0.056011988384852884
SSDSVGGFRY	10	Unmodified	_SSDSVGGFRY_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MSMS	HCT116MG_D190212_S4	4	537.7459106445312	2	537.74617	1073.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.08	1	37.697	37.197	38.197	-0.38283								0	0	0	0.050894	1	13942	13942		99.755	30.65	1				31569	2378	19852	19962	30396	30396					-0.056011988384852884
SSDVCRLTPA	10	Unmodified	_SSDVCRLTPA_					0	0	0		nc|ENSG00000121749|Q8TC07|TBC1D15;ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15	nc|ENSG00000121749|Q8TC07|TBC1D15	nc|ENSG00000121749|Q8TC07|TBC1D15	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2601928710938	2	524.758223	1047.50189	0.38334	0.00020116	0.96408	0.00050591	1.3474	0.00070707	525.2601197082116	20.525	0.68453	20.146	19.917	20.602	-0.37949					28	12	4	0	0	0	0.56527	1	7152	7152		30.637	2.142	1	23899000			31570	9440	19853	19963	30397	30397					-0.019956816764988616
SSDVGHDEY	9	Unmodified	_SSDVGHDEY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S1	1	504.6990661621094	2	504.698886	1007.38322	0.52305	0.00026398	-0.2157	-0.00010886	0.30734	0.00015512	504.6987483319	20.548	0.31227	20.548	20.383	20.696	0					11	5	3	0	0	0	0.004194	1	7195	7195		147.83	103.97	1	28427000			31571	2459	19854	19964	30398	30398					-0.12017757380522198
SSDVGHDEY	9	Unmodified	_SSDVGHDEY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	504.6990051269531	2	504.698886	1007.38322	0.44603	0.00022511	-0.092324	-4.6596E-05	0.3537	0.00017851	504.6987793685952	21.007	0.57085	20.624	20.494	21.065	-0.38288					20	10	3	0	0	0	0.004194	1	7373	7373		147.83	103.97	1	85680000			31572	2459	19854	19964	30399	30399					-0.12017757380522198
SSDVGHDEY	9	Unmodified	_SSDVGHDEY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S2	2	1008.39111328125	1	1008.3905	1007.38322	0.59049	0.00059545	-0.17242	-0.00017386	0.41807	0.00042158	1008.390481262629	21.007	0.26026	20.624	20.494	20.755	-0.38288					10	4	3	0	0	0	0.0036294	1	7394	7394		156.16	120.03	1	16000000			31573	2459	19854	19964	30400	30400					-0.12017757380522198
SSDVGHDEY	9	Unmodified	_SSDVGHDEY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	HCT116MG_D190212_S3	3	504.6991271972656	2	504.698886	1007.38322	0.22726	0.0001147	0.036849	1.8597E-05	0.26411	0.00013329	504.6989096347877	20.393	0.41653	20.442	20.259	20.676	0.048107					15	7	3	0	0	0	0.0047811	1	7052	7052		139.54	91.795	1	16452000			31574	2459	19854	19964	30401	30401					-0.12017757380522198
SSDVGHDEY	9	Unmodified	_SSDVGHDEY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1008.3905	1007.38322	0.96907	0.0009772	-0.63542	-0.00064075	0.33365	0.00033645	1008.3896696581037	20.551	0.15653	20.551	20.435	20.592	0	-0.036793	-0.00040679	NaN	156.16	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2213100			31575	2459	19854	19964							-0.12017757380522198
SSDVSHQEY	9	Unmodified	_SSDVSHQEY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	526.2200927734375	2	526.219985	1050.42542	0.32829	0.00017275	0.089604	4.7152E-05	0.4179	0.00021991	526.2199882750009	19.939	0.47062	19.939	19.704	20.175	0					27	8	5	0	0	0	0.00054449	1	6925	6925		216.57	97.671	1	137990000			31576	2041	19855	19965	30402	30402					-0.09777781972138655
SSDVSHQEY	9	Unmodified	_SSDVSHQEY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S1	1	1051.4337158203125	1	1051.43269	1050.42542	0.78948	0.00083008	0.44476	0.00046764	1.2342	0.0012977	1051.4330375894285	19.939	0.26154	19.939	19.756	20.018	0					9	4	3	0	0	0	0.0036005	1	6944	6944		209.87	106.52	1	9098200			31577	2041	19855	19965	30403	30403					-0.09777781972138655
SSDVSHQEY	9	Unmodified	_SSDVSHQEY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	526.2201538085938	2	526.219985	1050.42542	0.35923	0.00018903	-0.003339	-1.7571E-06	0.35589	0.00018728	526.2199977596116	20.375	0.63334	19.995	19.813	20.446	-0.37949					27	11	4	0	0	0	5.5766E-08	2	7119	7119;7128		249.11	117.84	1	336650000			31578	2041	19855	19965	30404;30405	30404					-0.09777781972138655
SSDVSHQEY	9	Unmodified	_SSDVSHQEY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1051.4334716796875	1	1051.43269	1050.42542	0.60733	0.00063857	0.027929	2.9366E-05	0.63526	0.00066794	1051.4327368370325	20.375	0.37097	19.995	19.865	20.236	-0.37949					14	6	3	0	0	0	7.9148E-05	1	7127	7127		240.95	114.39	1	41370000			31579	2041	19855	19965	30406	30406					-0.09777781972138655
SSDVSHQEY	9	Unmodified	_SSDVSHQEY_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	HCT116MG_D190212_S3	3	526.2203979492188	2	526.219985	1050.42542	0.36879	0.00019406	-0.011087	-5.8341E-06	0.3577	0.00018823	526.2200562971128	19.716	0.41671	19.776	19.594	20.011	0.05983					13	7	2	0	0	0	0.0042721	1	6779	6779		173.69	77.575	1	12992000			31580	2041	19855	19965	30407	30407					-0.09777781972138655
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.R281Q|1|0.17|ENSG00000180530|chr21:14967351-14967351|C/T|missense_variant;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	HCT116MG_D190212_S1	1	531.7463989257812	2	531.74617	1061.47779	0.38512	0.00020479	0.19555	0.00010398	0.58067	0.00030877	531.7463245537837	24.751	0.47076	24.751	24.516	24.987	0					17	8	4	0	0	0	0.0015072	1	8875	8875		189.78	132.05	1	58449000			31581	5602;9706	19856	19966	30408	30408					-0.050491988385147124
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.R281Q|1|0.17|ENSG00000180530|chr21:14967351-14967351|C/T|missense_variant;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7464599609375	2	531.74617	1061.47779	0.53771	0.00028592	0.23858	0.00012686	0.77628	0.00041279	531.7463424273087	25.217	0.52066	24.842	24.556	25.076	-0.37521					24	9	4	0	0	0	1.2354E-05	1	9072	9072		214.41	138.65	1	213060000			31582	5602;9706	19856	19966	30409	30409					-0.050491988385147124
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.R281Q|1|0.17|ENSG00000180530|chr21:14967351-14967351|C/T|missense_variant;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1062.4862060546875	1	1062.48506	1061.47779	0.66077	0.00070206	0.24591	0.00026128	0.90668	0.00096334	1062.4852675553125	25.217	0.2599	24.842	24.712	24.972	-0.37521					7	4	2	0	0	0	0.0035731	1	9100	9100		174.73	124.79	1	23333000			31583	5602;9706	19856	19966	30410	30410					-0.050491988385147124
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.R281Q|1|0.17|ENSG00000180530|chr21:14967351-14967351|C/T|missense_variant;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	HCT116MG_D190212_S3	3	531.7462768554688	2	531.74617	1061.47779	0.55724	0.00029631	-0.1245	-6.6203E-05	0.43274	0.00023011	531.7461754529031	24.919	0.677	24.835	24.549	25.226	-0.083694					21	12	3	0	0	0	1.6431E-08	1	8873	8873		231.69	165.23	1	50973000			31584	5602;9706	19856	19966	30411	30411					-0.050491988385147124
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.R281Q|1|0.17|ENSG00000180530|chr21:14967351-14967351|C/T|missense_variant;NRIP1|p.N516Tfs*11|1|0.46|ENSG00000180530|chr21:14966646-14966646|T/-|frameshift_variant;NRIP1|p.E729Rfs*8|1|0.33|ENSG00000180530|chr21:14966008-14966009|-/T|frameshift_variant;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E729Rfs*5|1|0.34|ENSG00000180530|chr21:14966009-14966009|T/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	MSMS	HCT116MG_D190212_S4	4	531.74609375	2	531.74617	1061.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.16	1	24.881	24.381	25.381	-0.27958								0	0	0	0.00011528	1	8902	8902		134.3	88.275	1				31585	5602;9706	19856	19966	30412	30412					-0.050491988385147124
SSEGRGDTDKY	11	Unmodified	_SSEGRGDTDKY_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MSMS	HCT116MG_D190212_S2	2	607.769287109375	2	607.767831	1213.52111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.511	1	16.169	15.669	16.669	-0.34183								0	0	0	0.9266	1	5561	5561		16.566	0.41677	1				31586	2937	19857	19967	30413	30413					-0.07711053851903671
SSEGTQHSY	9	Unmodified	_SSEGTQHSY_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;ENSG00000120756|ENST00000457734|PLS1	nc|ENSG00000102024|P13797-3|PLS3;ENSG00000120756|ENST00000457734|PLS1	ENSG00000120756|ENST00000457734|PLS1	MULTI-MSMS	HCT116MG_D190212_S1	1	498.2070617675781	2	498.206878	994.399203	0.40055	0.00019956	-0.033975	-1.6927E-05	0.36658	0.00018263	498.2067828038151	16.725	0.31235	16.725	16.577	16.889	0					10	5	3	0	0	0	0.026999	1	5663	5663		89.401	54.999	1	6589900			31587	1819;2713	19858	19968	30414	30414					-0.09822051143612498
SSEGTQHSY	9	Unmodified	_SSEGTQHSY_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;ENSG00000120756|ENST00000457734|PLS1	nc|ENSG00000102024|P13797-3|PLS3;ENSG00000120756|ENST00000457734|PLS1	ENSG00000120756|ENST00000457734|PLS1	MULTI-MSMS	HCT116MG_D190212_S2	2	498.2071228027344	2	498.206878	994.399203	0.40053	0.00019955	0.0011029	5.4949E-07	0.40164	0.0002001	498.2069450877775	17.095	0.31268	16.745	16.613	16.925	-0.34933					11	5	3	0	0	0	0.026999	1	5820	5820		89.401	53.274	1	10491000			31588	1819;2713	19858	19968	30415	30415					-0.09822051143612498
SSEKGGMNGY	10	Unmodified	_SSEKGGMNGY_					0	0	0		ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2191772460938	2	515.218931	1028.42331	0.38667	0.00019922	-0.26163	-0.0001348	0.12504	6.4422E-05	515.218772723695	21.568	0.20844	21.568	21.437	21.646	0					6	3	2	0	0	0	0.0015699	1	7603	7603		176.43	66.798	1	11212000			31589	2797	19859	19969	30416	30416					-0.0897653398158127
SSEKGGMNGY	10	Unmodified	_SSEKGGMNGY_					0	0	0		ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2186279296875	2	515.218931	1028.42331	0.1936	9.9744E-05	-0.31329	-0.00016141	-0.1197	-6.167E-05	515.2188016686797	22.05	0.3649	21.665	21.479	21.844	-0.38503					13	6	3	0	0	0	0.0015699	1	7800	7800		176.43	66.798	1	36726000			31590	2797	19859	19969	30417	30417					-0.0897653398158127
SSEKIHERSGP	11	Unmodified	_SSEKIHERSGP_					0	0	0		nc|ENSG00000171483|Q7RTT6|SSX6P	nc|ENSG00000171483|Q7RTT6|SSX6P	nc|ENSG00000171483|Q7RTT6|SSX6P	MULTI-MSMS	HCT116MG_D190212_S4	4	613.8095703125	2	613.809833	1225.60511	0.63776	0.00039147	-0.2704	-0.00016597	0.36737	0.00022549	613.8096745780559	31.68	0.3117	31.309	31.127	31.439	-0.37026					9	5	2	0	0	0	0.73536	1	11520	11520		8.7454	0	1	3278500			31591	9547	19860	19970	30418	30418					0.0013352203566228127
SSEKKRKSI	9	Unmodified	_SSEKKRKSI_					0	0	0		RAD17|p.N51Kfs*37|1|0.46|ENSG00000152942|chr5:69373933-69373934|-/A|frameshift_variant	RAD17|p.N51Kfs*37|1|0.46|ENSG00000152942|chr5:69373933-69373934|-/A|frameshift_variant	RAD17|p.N51Kfs*37|1|0.46|ENSG00000152942|chr5:69373933-69373934|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1062.6278076171875	1	1062.62658	1061.61931	0.77262	0.00082101	0.65646	0.00069757	1.4291	0.0015186	1062.6270040370744	47.324	1.1028	47.324	46.492	47.595	0					38	21	2	0	0	0	0.74607	1	17989	17989		2.0598	0	1	20559000			31592	9797	19861	19971	30419	30419					0.09096219254638527
SSEKVDKAQRY	11	Unmodified	_SSEKVDKAQRY_					0	0	0		ENST00000430020.5_1_3:9704013-9725062:+|nuORF;ENST00000414996.1_1_3:9710441-9730764:+|nuORF;MTMR14|p.L397*|1|0.24|ENSG00000163719|chr3:9687841-9687841|T/-|frameshift_variant;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14	ENST00000430020.5_1_3:9704013-9725062:+|nuORF	ENST00000430020.5_1_3:9704013-9725062:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	655.8388671875	2	655.838591	1309.66263	0.4792	0.00031428	-0.03752	-2.4607E-05	0.44168	0.00028967	655.8383996409142	16.207	0.20908	15.872	15.741	15.951	-0.33451					6	3	2	0	0	0	0.048251	1	5456	5456		98.634	63.022	1	9227400			31593	4625	19862	19972	30420	30420					0.02018364241234849
SSELFTLT	8	Unmodified	_SSELFTLT_					0	0	0		ENSG00000054116|ENST00000373166|TRAPPC3;ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENSG00000054116|ENST00000373166|TRAPPC3	ENSG00000054116|ENST00000373166|TRAPPC3	MULTI-MSMS	HCT116MG_D190212_S2	2	897.4570922851562	1	897.45639	896.449113	0.93339	0.00083768	-0.53137	-0.00047688	0.40202	0.0003608	897.4555082766578	53.267	0.20648	53.078	52.966	53.172	-0.18922					6	3	2	0	0	0	0.070772	1	20500	20500		101.72	19.858	1	9577500			31594	1067	19863	19973	30421	30421					-0.0032531646767210987
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENSG00000054116|ENST00000373166|TRAPPC3;ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENSG00000054116|ENST00000373166|TRAPPC3	ENSG00000054116|ENST00000373166|TRAPPC3	MULTI-MSMS	HCT116MG_D190212_S1	1	1060.5208740234375	1	1060.51972	1059.51244	0.79035	0.00083819	-0.15086	-0.00015999	0.63949	0.00067819	1060.519611889115	55.939	0.20422	55.939	55.811	56.015	0					6	3	2	0	0	0	0.013464	1	21509	21509		104.8	60.392	1	84895000			31595	1067	19864	19974	30422	30422					-0.014933757504195455
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENSG00000054116|ENST00000373166|TRAPPC3;ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENSG00000054116|ENST00000373166|TRAPPC3	ENSG00000054116|ENST00000373166|TRAPPC3	MULTI-MSMS	HCT116MG_D190212_S2	2	1060.5205078125	1	1060.51972	1059.51244	0.67779	0.00071881	0.23898	0.00025344	0.91677	0.00097225	1060.519859546207	56.106	0.25617	55.924	55.796	56.052	-0.18261					12	4	4	0	0	0	0.013464	1	21643	21643		104.8	60.392	1	287320000			31596	1067	19864	19974	30423	30423					-0.014933757504195455
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENSG00000054116|ENST00000373166|TRAPPC3;ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENSG00000054116|ENST00000373166|TRAPPC3	ENSG00000054116|ENST00000373166|TRAPPC3	MULTI-MSMS	HCT116MG_D190212_S3	3	1060.520751953125	1	1060.51972	1059.51244	0.72345	0.00076724	0.22283	0.00023631	0.94628	0.0010036	1060.5198475449731	56.198	0.26134	55.914	55.784	56.045	-0.28367					8	4	3	0	0	0	0.031005	1	21352	21352		85.357	55.132	1	11211000			31597	1067	19864	19974	30424	30424					-0.014933757504195455
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENSG00000054116|ENST00000373166|TRAPPC3;ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENSG00000054116|ENST00000373166|TRAPPC3	ENSG00000054116|ENST00000373166|TRAPPC3	MULTI-MSMS	HCT116MG_D190212_S4	4	1060.5194091796875	1	1060.51972	1059.51244	0.73396	0.00077838	-0.043927	-4.6585E-05	0.69004	0.0007318	1060.5194657162667	56.216	0.21087	55.91	55.779	55.989	-0.30626					6	3	2	0	0	0	0.031005	1	21081	21081		85.357	62.208	1	4880800			31598	1067	19864	19974	30425	30425					-0.014933757504195455
SSELKNRMEY	10	Unmodified	_SSELKNRMEY_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-SECPEP	HCT116MG_D190212_S2	2	419.7426452636719	3	419.536172	1255.58669	0.037894	1.5898E-05	-0.30147	-0.00012648	-0.26358	-0.00011058	419.53590271635613	26.985	0.15856	26.632	26.554	26.713	-0.35254					4	2	2	0	0	0	0.30007	1	9768	9768		22.109	12.345	1	3653000			31599	3917	19865	19975	30426	30426					-0.03088355930549369
SSENPWMTEY	10	Unmodified	_SSENPWMTEY_					0	0	0		nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP	nc|ENSG00000154429|Q6IQ19-2|CCSAP	nc|ENSG00000154429|Q6IQ19-2|CCSAP	MULTI-MSMS	HCT116MG_D190212_S2	2	622.7515869140625	2	622.250428	1242.4863	0.1875	0.00011667	0.27051	0.00016832	0.45801	0.000285	622.2507019912875	49.978	0.45967	49.814	49.585	50.044	-0.16369					14	8	2	0	0	0	0.00045417	1	19147	19147		187.3	163.28	1	59998000			31600	4219	19866	19976	30427	30427					-0.1252401298422683
SSENPWMTEY	10	Unmodified	_SSENPWMTEY_					0	0	0		nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF;ENSG00000154429|ENST00000284617|CCSAP	nc|ENSG00000154429|Q6IQ19-2|CCSAP	nc|ENSG00000154429|Q6IQ19-2|CCSAP	MULTI-MSMS	HCT116MG_D190212_S2	2	1243.4931640625	1	1243.49358	1242.4863	0.24234	0.00030135	0.55635	0.00069182	0.7987	0.00099317	1243.4940407424672	50.006	0.20495	49.843	49.686	49.891	-0.16369					6	3	2	0	0	0	0.00018636	1	19161	19161		193.29	157.25	1	18692000			31601	4219	19866	19976	30428	30428					-0.1252401298422683
SSEPCLPGCEP	11	Unmodified	_SSEPCLPGCEP_					0	0	0		ENST00000465385.5_1_22:24113378-24121604:+|nuORF	ENST00000465385.5_1_22:24113378-24121604:+|nuORF	ENST00000465385.5_1_22:24113378-24121604:+|nuORF	MSMS	HCT116MG_D190212_S1	1	559.8395385742188	2	559.728274	1117.442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.14	1	31.14	30.64	31.64	0								0	0	0	0.95196	1	11447	11447		5.2969	0.54088	1				31602	8089	19867	19977	30429	30429					-0.11202740402040945
SSEPGFGA	8	Unmodified	_SSEPGFGA_					0	0	0			REV__ENSG00000250571|ENST00000340042|GLI4	REV__ENSG00000250571|ENST00000340042|GLI4	MULTI-MSMS	HCT116MG_D190212_S2	2	751.3258056640625	1	751.32571	750.318434	0.97457	0.00073222	-0.29215	-0.0002195	0.68242	0.00051272	751.3252967770856	31.009	0.51661	30.742	30.56	31.077	-0.26704					18	9	3	0	0	0	0.5791	1	11416	11416		34.187	7.8461	1	113770000	+		31603	14380	19868	19978	30430	30430					-0.06671287395852232
SSEQTFMYY	9	Oxidation (M)	_SSEQTFM(Oxidation (M))YY_		SSEQTFM(1)YY		SSEQTFM(110)YY	0	0	1		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S1	1	586.234619140625	2	586.234247	1170.45394	0.7927	0.00046471	-0.41687	-0.00024438	0.37583	0.00022033	586.233974502669	41.835	0.36479	41.835	41.602	41.966	0					14	6	3	0	0	0	0.012496	1	15748	15748		107.19	72.255	1	28471000			31604	2484	19869	19979	30431	30431		48			-0.12446800387215262
SSEQTFMYY	9	Oxidation (M)	_SSEQTFM(Oxidation (M))YY_		SSEQTFM(1)YY		SSEQTFM(96)YY	0	0	1		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S2	2	586.23388671875	2	586.234247	1170.45394	0.64606	0.00037874	0.17146	0.00010052	0.81752	0.00047926	586.2340066491128	41.799	0.41491	41.731	41.498	41.913	-0.068199					19	7	3	0	0	0	0.020353	2	15795	15777;15795		96.111	57.496	1	64165000			31605	2484	19869	19979	30432;30433	30433		48			-0.12446800387215262
SSEQTFMYY	9	Oxidation (M)	_SSEQTFM(Oxidation (M))YY_		SSEQTFM(1)YY		SSEQTFM(75)YY	0	0	1		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S2	2	1171.4615478515625	1	1171.46122	1170.45394	0.58264	0.00068254	-0.21179	-0.0002481	0.37085	0.00043444	1171.4609633917019	41.807	0.26019	41.739	41.601	41.861	-0.068195					10	4	3	0	0	0	0.049545	1	15819	15819		74.929	40.527	1	14294000			31606	2484	19869	19979	30434	30434		48			-0.12446800387215262
SSEQTFMYY	9	Oxidation (M)	_SSEQTFM(Oxidation (M))YY_		SSEQTFM(1)YY		SSEQTFM(120)YY	0	0	1		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S3	3	586.2348022460938	2	586.234247	1170.45394	0.48353	0.00028346	0.064966	3.8086E-05	0.5485	0.00032155	586.2344100486213	42.083	0.41587	41.78	41.572	41.988	-0.30257					20	7	4	0	0	0	0.0077497	1	15648	15648		118.89	72.874	1	25386000			31607	2484	19869	19979	30435	30435		48			-0.12446800387215262
SSEQTFMYY	9	Oxidation (M)	_SSEQTFM(Oxidation (M))YY_		SSEQTFM(1)YY		SSEQTFM(96)YY	0	0	1		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S4	4	586.2347412109375	2	586.234247	1170.45394	0.46998	0.00027552	-0.052905	-3.1015E-05	0.41707	0.0002445	586.2342977441148	42.179	0.36117	41.804	41.581	41.942	-0.37565					14	6	3	0	0	0	0.020181	1	15480	15480		96.285	59.779	1	9891200			31608	2484	19869	19979	30436	30436		48			-0.12446800387215262
SSEQTFMYY	9	Oxidation (M)	_SSEQTFM(Oxidation (M))YY_					0	0	1		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1171.46122	1170.45394	0.83967	0.00098364	0.03743	4.3848E-05	0.8771	0.0010275	1171.4609508824906	41.835	0.26028	41.835	41.654	41.914	0	0.045924	0.00013576	NaN	74.929	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3929000			31609	2484	19869	19979				48			-0.12446800387215262
SSEQTFMYY	9	Oxidation (M)	_SSEQTFM(Oxidation (M))YY_					0	0	1		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1171.46122	1170.45394	0.50507	0.00059167	-0.15976	-0.00018715	0.34531	0.00040452	1171.4608826296667	42.097	0.25974	41.794	41.625	41.884	-0.30257	0.0049861	-9.5237E-05	NaN	74.929	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4228800			31610	2484	19869	19979				48			-0.12446800387215262
SSEQTFMYY	9	Unmodified	_SSEQTFMYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S1	1	578.2367553710938	2	578.23679	1154.45903	0.2929	0.00016937	0.09831	5.6846E-05	0.39121	0.00022621	578.2367841712346	48.44	0.25687	48.44	48.306	48.563	0					9	4	3	0	0	0	0.32978	1	18451	18451		27.629	12.38	1	29793000			31611	2484	19869	19980	30437	30437					-0.11202496524583694
SSEQTFMYY	9	Unmodified	_SSEQTFMYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S1	1	1155.4656982421875	1	1155.4663	1154.45903	0.44264	0.00051146	-0.45293	-0.00052335	-0.010291	-1.1891E-05	1155.4660748404	48.462	0.25687	48.462	48.306	48.563	0					9	4	3	0	0	0	0.041798	1	18454	18454		78.728	36.888	1	27252000			31612	2484	19869	19980	30438	30438					-0.11202496524583694
SSEQTFMYY	9	Unmodified	_SSEQTFMYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S2	2	579.076904296875	2	578.23679	1154.45903	0.57414	0.00033199	-0.22762	-0.00013162	0.34652	0.00020037	578.236851553409	48.557	0.30474	48.413	48.235	48.54	-0.1437					10	5	2	0	0	0	0.32978	2	18529	18529;18561		27.629	15.989	1	103410000			31613	2484	19869	19980	30439;30440	30439					-0.11202496524583694
SSEQTFMYY	9	Unmodified	_SSEQTFMYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S2	2	1155.4664306640625	1	1155.4663	1154.45903	0.62605	0.00072338	-0.27945	-0.0003229	0.3466	0.00040049	1155.4658380512092	48.562	0.40635	48.419	48.235	48.642	-0.1437					14	7	3	0	0	0	0.010834	1	18558	18558		111.29	69.447	1	140560000			31614	2484	19869	19980	30441	30441					-0.11202496524583694
SSEQTFMYY	9	Unmodified	_SSEQTFMYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S3	3	578.2366943359375	2	578.23679	1154.45903	0.77756	0.00044961	-0.31622	-0.00018285	0.46134	0.00026677	578.2365363428293	48.781	0.62588	48.465	48.244	48.87	-0.31596					30	11	4	0	0	0	0.035349	2	18341	18341;18476		81.89	52.809	1	62490000			31615	2484	19869	19980	30442;30443	30442					-0.11202496524583694
SSEQTFMYY	9	Unmodified	_SSEQTFMYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S3	3	1155.466064453125	1	1155.4663	1154.45903	0.8035	0.00092841	-0.45763	-0.00052878	0.34587	0.00039964	1155.4658332278077	48.741	0.41426	48.425	48.296	48.71	-0.31596					18	7	3	0	0	0	0.010834	1	18343	18343		111.29	73.313	1	28737000			31616	2484	19869	19980	30444	30444					-0.11202496524583694
SSEQTFMYY	9	Unmodified	_SSEQTFMYY_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	HCT116MG_D190212_S4	4	1155.467529296875	1	1155.4663	1154.45903	0.30699	0.00035472	0.60708	0.00070146	0.91407	0.0010562	1155.4671788649487	48.841	0.15722	48.476	48.408	48.565	-0.365					7	4	2	0	0	0	0.069315	1	18118	18118		65.235	36.153	1	4513600			31617	2484	19869	19980	30445	30445					-0.11202496524583694
SSESEFTQY	9	Unmodified	_SSESEFTQY_					0	0	0		nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF	nc|ENSG00000138434|P28290-2|ITPRID2	nc|ENSG00000138434|P28290-2|ITPRID2	MULTI-MSMS	HCT116MG_D190212_S1	1	539.222412109375	2	539.222194	1076.42983	0.48819	0.00026324	0.093283	5.0301E-05	0.58147	0.00031354	539.2221047936902	36.228	0.21452	36.228	36.098	36.312	0					5	3	2	0	0	0	0.39063	1	13531	13531		23.148	14.555	1	4183200			31618	3559	19870	19981	30446	30446					-0.1053231754922308
SSESGHYYSY	10	Unmodified	_SSESGHYYSY_					0	0	0		nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-MSMS	HCT116MG_D190212_S2	2	590.2328491210938	2	590.233093	1178.45163	0.60539	0.00035732	-0.017337	-1.0233E-05	0.58806	0.00034709	590.2329163264498	28.29	0.31106	27.96	27.77	28.081	-0.32987					10	5	3	0	0	0	0.076419	1	10334	10334		78.728	42.601	1	21898000			31619	5117	19871	19982	30447	30447					-0.13045512800658798
SSESLNHLLY	10	Unmodified	_SSESLNHLLY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.M3670*|1|0.5|ENSG00000253729|chr8:47785212-47785212|T/-|frameshift_variant;PRKDC|p.S4099Qfs*6|1|0.25|ENSG00000253729|chr8:47774265-47774265|A/-|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.N4037Ifs*15|1|0.17|ENSG00000253729|chr8:47776916-47776916|T/-|frameshift_variant;PRKDC|p.M4020Cfs*2|1|0.31|ENSG00000253729|chr8:47776968-47776968|T/-|frameshift_variant;PRKDC|p.M3846Cfs*12|1|0.13|ENSG00000253729|chr8:47779047-47779047|T/-|frameshift_variant;PRKDC|p.K3681Nfs*6|1|0.32|ENSG00000253729|chr8:47785174-47785177|TTCT/-|frameshift_variant;PRKDC|p.N3605Kfs*3|1|0.22|ENSG00000253729|chr8:47788993-47788994|-/T|frameshift_variant;PRKDC|p.S3402Ifs*16|1|0.04|ENSG00000253729|chr8:47799302-47799303|-/AAACCGTGAGTTAGAGGAGGTAA|frameshift_variant;PRKDC|p.W3401Cfs*4|1|0.01|ENSG00000253729|chr8:47799304-47799305|-/AATGAATA|frameshift_variant;PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant;PRKDC|p.R2704Gfs*13|2|0.34|ENSG00000253729|chr8:47834238-47834238|T/-|frameshift_variant;PRKDC|p.D2437Wfs*3|1|0.11|ENSG00000253729|chr8:47840161-47840162|-/CA|frameshift_variant;PRKDC|p.E1557Sfs*16|1|0.16|ENSG00000253729|chr8:47886051-47886051|C/-|frameshift_variant;PRKDC|p.G1227Vfs*50|2|0.31|ENSG00000253729|chr8:47893306-47893306|C/-|frameshift_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	HCT116MG_D190212_S2	2	581.7903442382812	2	581.790578	1161.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.692	1	45.591	45.091	46.091	-0.1014								0	0	0	0.054258	1	17383	17383		93.166	53.209	1				31620	6591	19872	19983	30448	30448					-0.007717835988387378
SSETTAAH	8	Unmodified	_SSETTAAH_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MSMS	HCT116MG_D190212_S3	3	402.1799011230469	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.76	1	64.559	64.059	65.059	-0.2009								0	0	0	0.8837	1	24609	24609		0.79363	0	1				31621	2640	19873	19984	30449	30449					-0.06336803855469952
SSETWHCCL	9	Unmodified	_SSETWHCCL_					0	0	0		ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	355.809326171875	3	355.809127	1064.40555	-0.033318	-1.1855E-05	0.83132	0.00029579	0.798	0.00028394	355.8094121339794	43.399	0.36157	43.094	42.984	43.345	-0.30472					10	6	2	0	0	0	0.70732	1	16237	16237		2.7352	0	1	5883300			31622	8741	19874	19985	30450	30450					-0.12407572508095654
SSEVIKDANLY	11	Unmodified	_SSEVIKDANLY_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	HCT116MG_D190212_S1	1	619.8169555664062	2	619.816793	1237.61903	0.45233	0.00028036	-0.3663	-0.00022704	0.08603	5.3323E-05	619.8166360470327	36.928	0.20714	36.928	36.783	36.99	0					5	3	2	0	0	0	3.5139E-05	1	13797	13797		162.31	112.76	1	11064000			31623	1166	19875	19986	30451	30451					0.009727547440888884
SSEVIKDANLY	11	Unmodified	_SSEVIKDANLY_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	HCT116MG_D190212_S2	2	619.8176879882812	2	619.816793	1237.61903	0.43213	0.00026784	-0.15046	-9.3256E-05	0.28167	0.00017458	619.8168257501784	36.948	0.25807	36.833	36.653	36.912	-0.11478					7	4	2	0	0	0	0.034697	1	13850	13850		111.31	57.905	1	15874000			31624	1166	19875	19986	30452	30452					0.009727547440888884
SSEVIKDANLY	11	Unmodified	_SSEVIKDANLY_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	619.816793	1237.61903	0.43099	0.00026714	-0.85505	-0.00052997	-0.42406	-0.00026284	619.816653691728	37.148	0.26029	36.847	36.665	36.925	-0.30137	-0.022238	-0.00060362	NaN	162.31	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4920200			31625	1166	19875	19986							0.009727547440888884
SSFHDTIAGP	10	Unmodified	_SSFHDTIAGP_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-SECPEP	HCT116MG_D190212_S1	1	516.2775268554688	2	516.243264	1030.47197	0.2541	0.00013118	-1.3493	-0.00069658	-1.0952	-0.0005654	516.2425973640675	25.171	0.2613	25.171	25.04	25.301	0					6	4	2	0	0	0	0.3029	1	9004	9004		6.7232	1.4925	1	4437800			31626	6440	19876	19987	30453	30453					-0.04204297350179331
SSFHDTIAGPN	11	Unmodified	_SSFHDTIAGPN_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MSMS	HCT116MG_D190212_S4	4	1145.524658203125	1	1145.52218	1144.5149	0.44945	0.00051485	0.090369	0.00010352	0.53982	0.00061837	1145.522520057121	30.327	0.43196	29.97	29.597	30.029	-0.3571					15	8	2	0	0	0	0.67041	1	10968	10968		27.629	0.54043	1	5284200			31627	6440	19877	19988	30454	30454					-0.05157527292749364
SSFREWVV	8	Unmodified	_SSFREWVV_					0	0	0			REV__ENST00000452761.1_1_2:110745136-110745940:-|nuORF	REV__ENST00000452761.1_1_2:110745136-110745940:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	505.25634765625	2	505.258717	1008.50288	0.43315	0.00021885	-2.621	-0.0013243	-2.1878	-0.0011054	505.2564780555008	21.007	0.26026	20.624	20.494	20.755	-0.38288					9	4	3	0	0	0	0.7524	1	7395	7395		16.942	2.104	1	18337000	+		31628	15723	19878	19989	30455	30455					-0.0010309924529110503
SSGGKAGF	8	Unmodified	_SSGGKAGF_					0	0	0			REV__ENST00000356527.9_1_1:150598273-150599940:-|nuORF	REV__ENST00000356527.9_1_1:150598273-150599940:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	355.06976318359375	2	355.677028	709.339503	-0.10861	-3.8631E-05	-0.059505	-2.1165E-05	-0.16812	-5.9796E-05	355.67699278015203	24.961	0.20963	24.961	24.83	25.04	0					5	3	2	0	0	0	0.33364	1	8987	8987		2.8892	0	1	6506400	+		31629	15049	19879	19990	30456	30456					-0.02679277296329019
SSGLPRNTVVL	11	Unmodified	_SSGLPRNTVVL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	HCT116MG_D190212_S1	1	571.8304443359375	2	571.830037	1141.64552	0.50252	0.00028736	0.91446	0.00052291	1.417	0.00081027	571.8302852827089	41.287	0.36487	41.287	41.081	41.445	0					8	6	2	0	0	0	0.41751	1	15557	15557		53.47	26.246	1	9261100			31630	4761	19880	19991	30457	30457					0.08036488426114374
SSGPPQPQPQ	10	Unmodified	_SSGPPQPQPQ_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1022.4906005859375	1	1022.49015	1021.48287	0.59422	0.00060759	-0.19107	-0.00019537	0.40316	0.00041222	1022.4901786826225	19.44	0.31269	19.499	19.333	19.646	0.05983					9	5	2	0	0	0	0.15126	1	6706	6706		63.961	2.8706	1	2205600	+		31631	10284	19881	19992	30458	30458					-0.02700894975907886
SSGVYPEPLRW	11	Unmodified	_SSGVYPEPLRW_					0	0	0		nc|ENSG00000145626|Q6NUS8-2|UGT3A1	nc|ENSG00000145626|Q6NUS8-2|UGT3A1	nc|ENSG00000145626|Q6NUS8-2|UGT3A1	MSMS	HCT116MG_D190212_S1	1	430.8880310058594	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.534	1	64.534	64.034	65.034	0								0	0	0	0.96192	1	24888	24888		0.08335	0	1				31632	9489	19882	19993	30459	30459					0.0072018456346540916
SSGWSSPTMCS	11	Unmodified	_SSGWSSPTMCS_					0	0	0			REV__ENST00000435030.1_2:149679787-149793897:+|nuORF	REV__ENST00000435030.1_2:149679787-149793897:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	377.14764404296875	3	377.147808	1128.42159	-0.18057	-6.8102E-05	-0.12303	-4.6399E-05	-0.3036	-0.0001145	377.14771256713146	27.782	0.35937	27.44	27.295	27.655	-0.34201					11	6	3	0	0	0	0.72373	1	10119	10119		7.0371	0.41363	1	36163000	+		31633	15612	19883	19994	30460	30460					-0.13747911061841478
SSGWSSPTMCS	11	Unmodified	_SSGWSSPTMCS_					0	0	0			REV__ENST00000435030.1_2:149679787-149793897:+|nuORF	REV__ENST00000435030.1_2:149679787-149793897:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	377.147808	1128.42159	0.10053	3.7915E-05	0.67146	0.00025324	0.77199	0.00029115	377.14802225597816	27.706	0.25986	27.517	27.361	27.621	-0.18847	0.065474	0.00096309	NaN	7.0371	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2945900	+		31634	15612	19883	19994							-0.13747911061841478
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.12109375	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.60329	1	0.60329	0.10329	1.1033	0								0	0	0	0.8837	1	186	186		0	0	1		+		31635	13879	19884	19995	30461	30461					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.12139892578125	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1362	1	1.1362	0.6362	1.6362	0								0	0	0	0.8837	1	341	341		0	0	1		+		31636	13879	19884	19995	30462	30462					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1213073730469	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.7577	1	3.7577	3.2577	4.2577	0								0	0	0	0.8837	1	1130	1130		0	0	1		+		31637	13879	19884	19995	30463	30463					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1221618652344	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7958	1	4.7958	4.2958	5.2958	0								0	0	0	0.8837	1	1443	1443		0	0	1		+		31638	13879	19884	19995	30464	30464					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1213684082031	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3036	1	5.3036	4.8036	5.8036	0								0	0	0	0.8837	1	1597	1597		0	0	1		+		31639	13879	19884	19995	30465	30465					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1217041015625	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8154	1	5.8154	5.3154	6.3154	0								0	0	0	0.8837	1	1751	1751		0	0	1		+		31640	13879	19884	19995	30466	30466					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1213073730469	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3208	1	6.3208	5.8208	6.8208	0								0	0	0	0.8837	1	1906	1906		0	0	1		+		31641	13879	19884	19995	30467	30467					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1216125488281	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8312	1	6.8312	6.3312	7.3312	0								0	0	0	0.8837	1	2063	2063		0	0	1		+		31642	13879	19884	19995	30468	30468					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.12176513671875	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3961	1	9.3961	8.8961	9.8961	0								0	0	0	0.8837	1	2846	2846		0	0	1		+		31643	13879	19884	19995	30469	30469					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1217956542969	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.182	1	12.182	11.682	12.682	0								0	0	0	0.8837	1	3893	3893		0	0	1		+		31644	13879	19884	19995	30470	30470					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1215515136719	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.779	1	12.779	12.279	13.279	0								0	0	0	0.8837	1	4120	4120		0	0	1		+		31645	13879	19884	19995	30471	30471					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.121826171875	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.452	1	63.452	62.952	63.952	0								0	0	0	0.8837	1	24512	24512		0	0	1		+		31646	13879	19884	19995	30472	30472					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S1	1	369.1217346191406	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.988	1	64.988	64.488	65.488	0								0	0	0	0.8837	1	25033	25033		0	0	1		+		31647	13879	19884	19995	30473	30473					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.1213684082031	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.65589	1	0.65077	0.15077	1.1508	-0.0051233								0	0	0	0.8837	1	218	218		0	0	1		+		31648	13879	19884	19995	30474	30474					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.1214294433594	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1796	1	1.1733	0.67329	1.6733	-0.0062599								0	0	0	0.8837	1	383	383		0	0	1		+		31649	13879	19884	19995	30475	30475					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.12103271484375	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9429	1	3.8539	3.3539	4.3539	-0.089082								0	0	0	0.8837	1	1251	1251		0	0	1		+		31650	13879	19884	19995	30476	30476					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.121337890625	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9807	1	5.8061	5.3061	6.3061	-0.17458								0	0	0	0.8837	1	1897	1897		0	0	1		+		31651	13879	19884	19995	30477	30477					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.12139892578125	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4932	1	6.3186	5.8186	6.8186	-0.17458								0	0	0	0.8837	1	2048	2048		0	0	1		+		31652	13879	19884	19995	30478	30478					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.1217346191406	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.5163	1	7.3005	6.8005	7.8005	-0.21581								0	0	0	0.8837	1	2358	2358		0	0	1		+		31653	13879	19884	19995	30479	30479					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.1216125488281	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.022	1	7.7908	7.2908	8.2908	-0.23116								0	0	0	0.8837	1	2513	2513		0	0	1		+		31654	13879	19884	19995	30480	30480					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.12127685546875	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.41	1	63.288	62.788	63.788	-0.12264								0	0	0	0.8837	1	24581	24581		0	0	1		+		31655	13879	19884	19995	30481	30481					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S2	2	369.1213073730469	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.457	1	64.342	63.842	64.842	-0.11585								0	0	0	0.8837	1	24940	24940		0	0	1		+		31656	13879	19884	19995	30482	30482					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.1216125488281	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.076715	1	0.13762	-0.36238	0.63762	0.060905								0	0	0	0.8837	1	30	30		0	0	1		+		31657	13879	19884	19995	30483	30483					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.12164306640625	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.60625	1	0.66715	0.16715	1.1672	0.060905								0	0	0	0.8837	1	194	194		0	0	1		+		31658	13879	19884	19995	30484	30484					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.12158203125	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6497	1	1.7106	1.2106	2.2106	0.060905								0	0	0	0.8837	1	511	511		0	0	1		+		31659	13879	19884	19995	30485	30485					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.1217956542969	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.1684	1	2.2236	1.7236	2.7236	0.055284								0	0	0	0.8837	1	660	660		0	0	1		+		31660	13879	19884	19995	30486	30486					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.12158203125	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.717	1	3.7534	3.2534	4.2534	0.036387								0	0	0	0.8837	1	1125	1125		0	0	1		+		31661	13879	19884	19995	30487	30487					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.1212158203125	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7574	1	4.7799	4.2799	5.2799	0.022513								0	0	0	0.8837	1	1432	1432		0	0	1		+		31662	13879	19884	19995	30488	30488					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.3515625	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3847	1	5.4022	4.9022	5.9022	0.017489								0	0	0	0.8837	1	1631	1631		0	0	1		+		31663	13879	19884	19995	30489	30489					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.12158203125	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7855	1	5.803	5.303	6.303	0.017489								0	0	0	0.8837	1	1751	1751		0	0	1		+		31664	13879	19884	19995	30490	30490					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.12152099609375	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8057	1	6.8196	6.3196	7.3196	0.013901								0	0	0	0.8837	1	2059	2059		0	0	1		+		31665	13879	19884	19995	30491	30491					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.12127685546875	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8351	1	7.8516	7.3516	8.3516	0.016533								0	0	0	0.8837	1	2368	2368		0	0	1		+		31666	13879	19884	19995	30492	30492					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.12152099609375	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3425	1	8.359	7.859	8.859	0.016533								0	0	0	0.8837	1	2521	2521		0	0	1		+		31667	13879	19884	19995	30493	30493					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.12152099609375	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8441	1	8.8647	8.3647	9.3647	0.020599								0	0	0	0.8837	1	2672	2672		0	0	1		+		31668	13879	19884	19995	30494	30494					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S3	3	369.1214904785156	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.582	1	13.657	13.157	14.157	0.074899								0	0	0	0.8837	1	4317	4317		0	0	1		+		31669	13879	19884	19995	30495	30495					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S4	4	369.12164306640625	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2157	1	1.9511	1.4511	2.4511	-0.26456								0	0	0	0.8837	1	681	681		0	0	1		+		31670	13879	19884	19995	30496	30496					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S4	4	369.1214294433594	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7409	1	2.4763	1.9763	2.9763	-0.26456								0	0	0	0.8837	1	841	841		0	0	1		+		31671	13879	19884	19995	30497	30497					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S4	4	369.1217041015625	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.923	1	11.749	11.249	12.249	-0.17441								0	0	0	0.8837	1	3685	3685		0	0	1		+		31672	13879	19884	19995	30498	30498					-0.15180617356327275
SSHCCGSG	8	Unmodified	_SSHCCGSG_					0	0	0			REV__ENSG00000186207|ENST00000334269|LCE5A	REV__ENSG00000186207|ENST00000334269|LCE5A	MSMS	HCT116MG_D190212_S4	4	369.12164306640625	2	369.120706	736.226858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.968	1	12.803	12.303	13.303	-0.16496								0	0	0	0.8837	1	4049	4049		0	0	1		+		31673	13879	19884	19995	30499	30499					-0.15180617356327275
SSHCGGSA	8	Unmodified	_SSHCGGSA_					0	0	0			REV__ENSG00000215252|ENST00000683415|GOLGA8B	REV__ENSG00000215252|ENST00000683415|GOLGA8B	MSMS	HCT116MG_D190212_S4	4	353.13385009765625	2	353.13467	704.254787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.017	1	35.631	35.131	36.131	-0.38558								0	0	0	0.8837	1	13164	13164		2.5775	0	1		+		31674	13507	19885	19996	30500	30500					-0.10916971104597906
SSHGLTMHSW	10	Unmodified	_SSHGLTMHSW_					0	0	0			REV__ENST00000536878.6_2_19:58103056-58103137:+|nuORF	REV__ENST00000536878.6_2_19:58103056-58103137:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	571.755126953125	2	571.756015	1141.49748	0.71764	0.00041031	-1.7788	-0.001017	-1.0611	-0.00060671	571.7552428369517	29.615	0.30998	29.314	29.134	29.444	-0.30095					7	5	2	0	0	0	0.81435	1	10878	10878		10.824	2.9138	1	36297000	+		31675	16346	19886	19997	30501	30501					-0.06761146099393045
SSHYRYPMDT	10	Unmodified	_SSHYRYPMDT_					0	0	0			REV__ENSG00000198951|ENST00000396398|NAGA	REV__ENSG00000198951|ENST00000396398|NAGA	MSMS	HCT116MG_D190212_S2	2	629.2182006835938	2	628.771862	1255.52917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.692	1	33.499	32.999	33.999	-0.19297								0	0	0	0.95507	1	12511	12511		3.5965	0.31518	1		+		31676	14171	19887	19998	30502	30502					-0.08837198136143343
SSIQELYAQ	9	Unmodified	_SSIQELYAQ_					0	0	0		GIPC2|p.K187Rfs*7|1|0.18|ENSG00000137960|chr1:78095080-78095080|A/-|frameshift_variant;ENSG00000137960|ENST00000370759|GIPC2	GIPC2|p.K187Rfs*7|1|0.18|ENSG00000137960|chr1:78095080-78095080|A/-|frameshift_variant	GIPC2|p.K187Rfs*7|1|0.18|ENSG00000137960|chr1:78095080-78095080|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	519.7587280273438	2	519.758746	1037.50294	0.59175	0.00030757	0.26607	0.00013829	0.85782	0.00044586	519.7586486579382	33.501	0.31488	33.118	32.997	33.312	-0.38282					14	7	3	0	0	0	0.45684	1	12197	12197		19.362	0.10495	1	12594000			31677	3520	19888	19999	30503	30503					-0.014311440359733751
SSIVSHHGA	9	Unmodified	_SSIVSHHGA_					0	0	0			REV__ENST00000382159.7_1_19:2514815-2515019:-|nuORF	REV__ENST00000382159.7_1_19:2514815-2515019:-|nuORF	MSMS	HCT116MG_D190212_S4	4	447.7249755859375	2	447.725041	893.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.376	1	16.212	15.712	16.712	-0.16364								0	0	0	0.76718	1	5355	5355		10.824	0	1		+		31678	15289	19889	20000	30504	30504					-0.015451294562353723
SSKKKKKKKK	10	Unmodified	_SSKKKKKKKK_					0	0	0			REV__ENST00000433510.2_1_17:46713640-46724167:-|nuORF	REV__ENST00000433510.2_1_17:46713640-46724167:-|nuORF	MSMS	HCT116MG_D190212_S3	3	609.4240112304688	2	609.424439	1216.83433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.536	1	37.235	36.735	37.735	-0.30137								0	0	0	0.97116	1	13907	13907		0	0	1		+		31679	15597	19890	20001	30505	30505					0.23458185790195785
SSKNVIAL	8	Unmodified	_SSKNVIAL_					0	0	0		ADGRV1|p.L3565V|1|0.31|ENSG00000164199|chr5:90745189-90745189|T/G|missense_variant	ADGRV1|p.L3565V|1|0.31|ENSG00000164199|chr5:90745189-90745189|T/G|missense_variant	ADGRV1|p.L3565V|1|0.31|ENSG00000164199|chr5:90745189-90745189|T/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	416.24871826171875	2	416.25036	830.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.645	1	39.344	38.844	39.844	-0.30137								0	0	0	0.8837	1	14722	14722		0.79363	0	1				31680	63	19891	20002	30506	30506					0.0641439986873138
SSKRKPSK	8	Unmodified	_SSKRKPSK_					0	0	0			REV__ZC3H13|p.R1007Tfs*2|1|0.37|ENSG00000123200|chr13:45969525-45969526|-/T|frameshift_variant	REV__ZC3H13|p.R1007Tfs*2|1|0.37|ENSG00000123200|chr13:45969525-45969526|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	459.2792053222656	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.563	1	54.24	53.74	54.74	-0.32349								0	0	0	0.8837	1	20405	20405		2.3027	0	1		+		31681	11759	19892	20003	30507	30507					0.08380295882943756
SSLASGSQI	9	Unmodified	_SSLASGSQI_					0	0	0			REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant	REV__NLGN3|p.C544Afs*15|1|0.5|ENSG00000196338|chrX:71167723-71167723|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	425.2192687988281	2	425.219257	848.423961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.871	1	17.871	17.371	18.371	0								0	0	0	0.76575	1	6109	6109		15.847	2.8047	1		+		31682	14019	19893	20004	30508	30508					-0.006313712702194607
SSLHRDSDPMK	11	Unmodified	_SSLHRDSDPMK_					0	0	0			REV__ENSG00000162949|ENST00000295055|CAPN13	REV__ENSG00000162949|ENST00000295055|CAPN13	MSMS	HCT116MG_D190212_S3	3	424.87298583984375	3	424.871555	1271.59283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3277	1	3.3641	2.8641	3.8641	0.036387								0	0	0	0.9598	1	1013	1013		0.40827	0	1		+		31683	12901	19894	20005	30509	30509					-0.032098376990461475
SSLPSEPFIFL	11	Unmodified	_SSLPSEPFIFL_					0	0	0			REV__ENST00000487296.1_1_6:32815065-32815170:-|nuORF	REV__ENST00000487296.1_1_6:32815065-32815170:-|nuORF	MSMS	HCT116MG_D190212_S1	1	412.88812255859375	3	412.88854	1235.64379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8474	1	6.8474	6.3474	7.3474	0								0	0	0	0.96121	1	2068	2068		0.45452	0.1855	1		+		31684	16004	19895	20006	30510	30510					0.03539434617482584
SSLVKQWQL	9	Unmodified	_SSLVKQWQL_					0	0	0			REV__nc|ENSG00000164674|Q4VX76-2|SYTL3	REV__nc|ENSG00000164674|Q4VX76-2|SYTL3	MULTI-MSMS	HCT116MG_D190212_S3	3	363.5413513183594	3	363.541475	1087.60259	-0.23037	-8.375E-05	0.01879	6.8308E-06	-0.21158	-7.6919E-05	363.541413841079	40.23	0.20849	39.929	39.799	40.007	-0.30137					6	3	2	0	0	0	0.60612	1	14958	14958		7.1017	2.5729	1	5876400	+		31685	13016	19896	20007	30511	30511					0.062297183686723656
SSNFRGGLG	9	Unmodified	_SSNFRGGLG_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	447.7249450683594	2	447.725041	893.435529	0.051363	2.2997E-05	0.19303	8.6425E-05	0.2444	0.00010942	447.7250535799705	27.204	0.20861	27.204	27.073	27.282	0					5	3	2	0	0	0	0.061422	1	9869	9869		69.105	29.148	1	8940100		+	31686	558	19897	20008	30512	30512					-0.01545129456212635
SSNIEEIAFIM	11	Unmodified	_SSNIEEIAFIM_					0	0	0			REV__CASR|p.N118Tfs*6|1|0.17|ENSG00000036828|chr3:122257245-122257245|A/-|frameshift_variant	REV__CASR|p.N118Tfs*6|1|0.17|ENSG00000036828|chr3:122257245-122257245|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	627.3096923828125	2	627.307746	1252.60094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.706	1	20.741	20.241	21.241	0.034473								0	0	0	0.84073	1	7177	7177		27.629	1.6081	1		+		31687	10097	19898	20009	30513	30513					-0.015257035022841592
SSNRSHGGQP	10	Unmodified	_SSNRSHGGQP_					0	0	0			REV__ENSG00000115977|ENST00000409085|AAK1	REV__ENSG00000115977|ENST00000409085|AAK1	MULTI-MSMS	HCT116MG_D190212_S1	1	513.738525390625	2	513.739211	1025.46387	0.41208	0.0002117	-2.7271	-0.001401	-2.315	-0.0011893	513.7378846144883	26.527	0.31226	26.527	26.449	26.761	0					6	5	2	0	0	0	0.57664	1	9617	9617		29.841	8.3036	1	4151200	+		31688	11566	19899	20010	30514	30514					-0.04784431546954693
SSNVNKAFY	9	Unmodified	_SSNVNKAFY_					0	0	0			REV__ENST00000446922.6_1_4:174253137-174253209:-|nuORF	REV__ENST00000446922.6_1_4:174253137-174253209:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7798461914062	2	515.253631	1028.49271	0.069708	3.5917E-05	0.59563	0.0003069	0.66534	0.00034282	515.2537079198772	36.608	0.46831	36.307	36.041	36.509	-0.30113					14	8	2	0	0	0	0.57626	1	13511	13511		12.532	1.0368	1	2287800	+		31689	15679	19900	20011	30515	30515					-0.020397069705268223
SSPAGGLPVS	10	Unmodified	_SSPAGGLPVS_					0	0	0			REV__ENSG00000143195|ENST00000271417|ILDR2	REV__ENSG00000143195|ENST00000271417|ILDR2	MULTI-MSMS	HCT116MG_D190212_S3	3	871.4518432617188	1	871.451973	870.444697	0.83819	0.00073044	-0.33536	-0.00029225	0.50283	0.00043819	871.4519138632584	33.672	0.60351	33.382	33.011	33.615	-0.29013					16	11	2	0	0	0	0.48679	1	12362	12362		36.127	0.082828	1	4705100	+		31690	12378	19901	20012	30516	30516					0.004292191094236841
SSPATHDAGAP	11	Unmodified	_SSPATHDAGAP_					0	0	0			REV__nc|ENSG00000097021|O00154-3|ACOT7	REV__nc|ENSG00000097021|O00154-3|ACOT7	MULTI-MSMS	HCT116MG_D190212_S4	4	505.7301025390625	2	505.73052	1009.44649	0.11219	5.674E-05	-0.098794	-4.9963E-05	0.0134	6.777E-06	505.73047074044405	22.814	0.31322	22.576	22.393	22.706	-0.23758					7	5	2	0	0	0	0.71271	1	7960	7960		17.113	1.2657	1	3858300	+		31691	17093	19902	20013	30517	30517					-0.057857718726268104
SSPGGWGY	8	Unmodified	_SSPGGWGY_					0	0	0			REV__ENSG00000237136|ENST00000438731|C4orf51	REV__ENSG00000237136|ENST00000438731|C4orf51	MULTI-MSMS	HCT116MG_D190212_S2	2	405.6744384765625	2	405.674485	809.334418	-0.12627	-5.1224E-05	0.036167	1.4672E-05	-0.090102	-3.6552E-05	405.6744307600611	20.903	0.31226	20.52	20.39	20.703	-0.38288					9	5	3	0	0	0	0.77285	1	7350	7350		14.582	14.582	1	21213000	+		31692	14337	19903	20014	30518	30518					-0.07787581158947887
SSPGWGGAQGP	11	Unmodified	_SSPGWGGAQGP_					0	0	0			REV__ENST00000262158.6_1_18:46447112-46447352:-|nuORF	REV__ENST00000262158.6_1_18:46447112-46447352:-|nuORF	MSMS	HCT116MG_D190212_S4	4	500.72900390625	2	500.727781	999.441008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.806	1	17.631	17.131	18.131	-0.17501								0	0	0	0.92983	1	5933	5933		16.149	3.1066	1		+		31693	14633	19904	20015	30519	30519					-0.05873450664410029
SSPHHVAG	8	Unmodified	_SSPHHVAG_					0	0	0		ENST00000585159.5_1_18:70204665-70204911:-|nuORF	ENST00000585159.5_1_18:70204665-70204911:-|nuORF	ENST00000585159.5_1_18:70204665-70204911:-|nuORF	MSMS	HCT116MG_D190212_S2	2	396.193603515625	2	396.193377	790.372201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.365	1	20.982	20.482	21.482	-0.38288								0	0	0	0.8837	1	7516	7516		14.582	1.0738	1				31694	8985	19905	20016	30520	30520					-0.03137070173477241
SSPLKPQTG	9	Unmodified	_SSPLKPQTG_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	HCT116MG_D190212_S2	2	457.750732421875	2	457.750724	913.486896	0.14594	6.6804E-05	0.13874	6.3508E-05	0.28468	0.00013031	457.7507110368199	20.642	0.26388	20.262	20.13	20.394	-0.37949					10	4	3	0	0	0	0.12205	1	7247	7247		53.833	0	1	33740000	+		31695	10801	19906	20017	30521	30521					0.02669194517818596
SSPLNHPVVTL	11	Unmodified	_SSPLNHPVVTL_					0	0	0			REV__TLR9|p.R216H|1|0.42|ENSG00000239732|chr3:52223669-52223669|C/T|missense_variant	REV__TLR9|p.R216H|1|0.42|ENSG00000239732|chr3:52223669-52223669|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	582.3248291015625	2	582.324588	1162.63462	0.43395	0.0002527	-0.64854	-0.00037766	-0.21459	-0.00012496	582.3245811820772	45.55	0.25779	45.457	45.256	45.514	-0.092472					7	4	2	0	0	0	0.59037	1	17331	17331		36.506	6.6656	1	18588000	+		31696	17641	19907	20018	30522	30522					0.059810860518155096
SSPSPPQAAAP	11	Unmodified	_SSPSPPQAAAP_					0	0	0			REV__SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	REV__SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	504.2434997558594	2	505.251089	1008.48762	0.32131	0.00016234	-2.0436	-0.0010325	-1.7223	-0.0008702	505.2511114632883	25.574	1.0928	25.294	25.058	26.15	-0.27997					60	20	4	0	0	0	0.71271	1	9213	9213		17.113	1.2657	1	150640000	+		31697	10773	19908	20019	30523	30523					-0.016280108331443444
SSQPPRQPP	9	Unmodified	_SSQPPRQPP_					0	0	0		ZMIZ1|p.P986S|1|0.3|ENSG00000108175|chr10:79311044-79311044|C/T|missense_variant	ZMIZ1|p.P986S|1|0.3|ENSG00000108175|chr10:79311044-79311044|C/T|missense_variant	ZMIZ1|p.P986S|1|0.3|ENSG00000108175|chr10:79311044-79311044|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	497.2593078613281	2	497.259248	992.503943	0.35317	0.00017562	-0.018684	-9.2908E-06	0.33449	0.00016633	497.25926231164703	20.955	0.51966	20.572	20.39	20.91	-0.38288					18	9	3	0	0	0	0.30117	1	7357	7357		30.637	3.0077	1	13033000			31698	18716	19909	20020	30524	30524					0.007391151236106452
SSQPPRQPP	9	Unmodified	_SSQPPRQPP_					0	0	0		ZMIZ1|p.P986S|1|0.3|ENSG00000108175|chr10:79311044-79311044|C/T|missense_variant	ZMIZ1|p.P986S|1|0.3|ENSG00000108175|chr10:79311044-79311044|C/T|missense_variant	ZMIZ1|p.P986S|1|0.3|ENSG00000108175|chr10:79311044-79311044|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	497.2593994140625	2	497.259248	992.503943	0.27848	0.00013848	0.04701	2.3376E-05	0.32549	0.00016185	497.2593324873233	20.029	0.52081	20.077	19.843	20.363	0.048107					17	9	3	0	0	0	0.30117	1	6928	6928		30.637	6.616	1	4481000			31699	18716	19909	20020	30525	30525					0.007391151236106452
SSQTGDWTWLK	11	Unmodified	_SSQTGDWTWLK_					0	0	0		nc|ENSG00000107938|Q3B7T1-4|EDRF1;EDRF1|p.L658Ffs*26|1|0.2|ENSG00000107938|chr10:125738432-125738433|-/T|frameshift_variant;nc|ENSG00000107938|Q3B7T1-3|EDRF1;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1	nc|ENSG00000107938|Q3B7T1-4|EDRF1	nc|ENSG00000107938|Q3B7T1-4|EDRF1	MSMS	HCT116MG_D190212_S1	1	436.8785400390625	3	436.878815	1307.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.97	1	13.97	13.47	14.47	0								0	0	0	0.96003	1	4550	4550		0.36667	0.22678	1				31700	757	19910	20021	30526	30526					-0.026887096788186682
SSRAKKRA	8	Unmodified	_SSRAKKRA_					0	0	0			REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	452.2774658203125	2	452.277775	902.540997	-0.020008	-9.0494E-06	0.11975	5.416E-05	0.099741	4.511E-05	452.27774634801835	42.99	1.9694	42.99	41.966	43.936	0					88	37	4	0	0	0	0.8672	2	16183	16183;16414		2.3027	0	1	66653000	+		31701	15852	19911	20022	30527;30528	30527					0.08582831460034868
SSRAKKRA	8	Unmodified	_SSRAKKRA_					0	0	0			REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	452.2779541015625	2	452.277775	902.540997	-0.031983	-1.4465E-05	0.23121	0.00010457	0.19923	9.0105E-05	452.27781661019117	44.223	0.94452	44.223	43.936	44.88	0					32	17	2	0	0	0	0.8672	1	16877	16877		2.3027	0	1	28427000	+		31702	15852	19911	20022	30529	30529					0.08582831460034868
SSRAKKRA	8	Unmodified	_SSRAKKRA_					0	0	0			REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	452.2778015136719	2	452.277775	902.540997	0.23997	0.00010853	-0.029579	-1.3378E-05	0.21039	9.5154E-05	452.2776823375156	43.573	1.266	43.267	42.858	44.124	-0.30616					58	26	3	0	0	0	0.8672	1	16191	16191		2.3027	0	1	12510000	+		31703	15852	19911	20022	30530	30530					0.08582831460034868
SSRAKKRA	8	Unmodified	_SSRAKKRA_					0	0	0			REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	452.27783203125	2	452.277775	902.540997	0.29972	0.00013556	-0.024712	-1.1177E-05	0.27501	0.00012438	452.2776774927716	43.84	1.3581	43.466	42.813	44.171	-0.37433					80	40	3	0	0	0	0.8672	1	16205	16205		2.3027	0	1	23643000	+		31704	15852	19911	20022	30531	30531					0.08582831460034868
SSRAKKRA	8	Unmodified	_SSRAKKRA_					0	0	0			REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	452.277775	902.540997	0.075518	3.4155E-05	-0.034779	-1.573E-05	0.040739	1.8425E-05	452.2776865266042	43.54	1.2861	43.466	42.891	44.177	-0.073376	0.066617	-6.1823E-06	NaN	2.3027	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24602000	+		31705	15852	19911	20022							0.08582831460034868
SSRAKKRA	8	Unmodified	_SSRAKKRA_					0	0	0			REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	REV__ENST00000468928.5_1_7:157161553-157163538:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	452.277775	902.540997	0.29972	0.00013556	-0.024712	-1.1177E-05	0.27501	0.00012438	452.2776774927716	43.84	1.3581	43.466	42.813	44.171	-0.37433	0.066474	2.9239E-06	NaN	2.3027	80	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23643000	+		31706	15852	19911	20022							0.08582831460034868
SSRAMRATVIL	11	Unmodified	_SSRAMRATVIL_					0	0	0		CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant	CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant	CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	402.2332763671875	3	402.232535	1203.67578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.939	1	29.702	29.202	30.202	-0.23655								0	0	0	0.95705	1	10893	10893		2.6312	0	1				31707	605	19912	20023	30532	30532					0.08208523819621405
SSRDFEYYK	9	Unmodified	_SSRDFEYYK_					0	0	0		nc|ENSG00000129353|Q8IWA5-2|SLC44A2;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;SLC44A2|p.N200Tfs*16|1|0.33|ENSG00000129353|chr19:10631718-10631718|A/-|frameshift_variant;ENST00000588465.5_1_19:10713206-10745972:+|nuORF	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	MSMS	HCT116MG_D190212_S1	1	398.8509521484375	3	398.852377	1193.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.544	1	10.544	10.044	11.044	0								0	0	0	0.77001	1	3244	3244		0.86438	0	1				31708	9458	19913	20024	30533	30533					-0.05372356632960873
SSRDLRKL	8	Unmodified	_SSRDLRKL_					0	0	0			REV__ENST00000525316.1_1_11:47751704-47752983:-|nuORF	REV__ENST00000525316.1_1_11:47751704-47752983:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	487.7906799316406	2	487.790715	973.566878	0.24209	0.00011809	0.28316	0.00013812	0.52525	0.00025621	487.79076182041064	45.494	1.7551	45.402	44.683	46.439	-0.092472					63	33	2	0	0	0	0.76189	1	17601	17601		15.847	4.2069	1	50057000	+		31709	16269	19914	20025	30534	30534					0.07903680911670108
SSRFSEEGPR	10	Unmodified	_SSRFSEEGPR_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;RAB11FIP5|p.G488Vfs*25|2|0.3|ENSG00000135631|chr2:73088155-73088155|C/-|frameshift_variant;ENST00000493523.2_1_2:73302651-73316730:-|nuORF;nc|ENSG00000135631|Q9BXF6|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	HCT116MG_D190212_S4	4	384.5192565917969	3	384.51951	1150.5367	0.073368	2.8211E-05	-0.22119	-8.505E-05	-0.14782	-5.6839E-05	384.51939000103624	20.788	0.25978	20.578	20.396	20.656	-0.20959					6	4	2	0	0	0	0.87343	1	7152	7152		5.0475	0.64137	1	3262100			31710	3364	19915	20026	30535	30535					-0.032547225441931005
SSRGDCIAESW	11	Unmodified	_SSRGDCIAESW_					0	0	0		ENST00000321063.8_1_7:132193282-132261233:-|nuORF	ENST00000321063.8_1_7:132193282-132261233:-|nuORF	ENST00000321063.8_1_7:132193282-132261233:-|nuORF	MSMS	HCT116MG_D190212_S1	1	605.761962890625	2	605.761494	1209.50844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.916	1	48.916	48.416	49.416	0								0	0	0	0.95196	1	18626	18626		5.2969	2.5617	1				31711	7102	19916	20027	30536	30536					-0.08793788515799861
SSRILRELHK	10	Unmodified	_SSRILRELHK_					0	0	0			REV__ENST00000486937.5_1_21:47655184-47666418:-|nuORF	REV__ENST00000486937.5_1_21:47655184-47666418:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1238.732666015625	1	1238.73278	1237.7255	0.48936	0.00060618	-0.61567	-0.00076265	-0.12631	-0.00015646	1238.7324266714818	50.263	0.4636	50.263	49.905	50.368	0					12	8	2	0	0	0	0.88823	1	19155	19155		1.4819	0	1	12581000	+		31712	12827	19917	20028	30537	30537					0.11614974819917734
SSRILRELHK	10	Unmodified	_SSRILRELHK_					0	0	0			REV__ENST00000486937.5_1_21:47655184-47666418:-|nuORF	REV__ENST00000486937.5_1_21:47655184-47666418:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1238.73046875	1	1238.73278	1237.7255	0.445	0.00055123	-0.87593	-0.001085	-0.43094	-0.00053381	1238.731422685851	50.612	0.56795	50.612	50.42	50.988	0					19	10	2	0	0	0	0.88823	1	19413	19413		1.4819	0	1	12161000	+		31713	12827	19917	20028	30538	30538					0.11614974819917734
SSRKKLEEL	9	Unmodified	_SSRKKLEEL_					0	0	0			REV__tr|U7SYX5|U7SYX5_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00851PE=4SV=1	REV__tr|U7SYX5|U7SYX5_FUSNUN-acetyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00851PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	545.3170776367188	2	545.316763	1088.61897	0.36526	0.00019918	0.1478	8.0598E-05	0.51306	0.00027978	545.3166876132258	48.037	1.6655	48.037	47.309	48.974	0					100	32	4	0	0	0	0.72399	1	18283	18283		3.5965	0	1	239880000	+		31714	17871	19918	20029	30539	30539					0.07820799534761136
SSRKKLIEE	9	Unmodified	_SSRKKLIEE_					0	0	0		tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	545.3167724609375	2	545.316763	1088.61897	0.36526	0.00019918	0.1478	8.0598E-05	0.51306	0.00027978	545.3166876132258	48.037	1.6655	48.037	47.309	48.974	0					100	32	4	0	0	0	0.72399	1	18059	18059		3.5965	0	1	239880000			31715	18519	19919	20030	30540	30540					0.07820799534761136
SSRKKLIEE	9	Unmodified	_SSRKKLIEE_					0	0	0		tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	545.3169555664062	2	545.316763	1088.61897	0.36269	0.00019778	0.2676	0.00014593	0.63029	0.00034371	545.3167109902226	48.895	2.3687	48.53	47.782	50.151	-0.365					128	56	4	0	0	0	0.71345	1	18183	18183		4.3292	0	1	17010000			31716	18519	19919	20030	30541	30541					0.07820799534761136
SSRKKLIEE	9	Unmodified	_SSRKKLIEE_					0	0	0		tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	tr|U7SYR8|U7SYR8_FUSNUReplicationproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00909PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	545.316763	1088.61897	0.36526	0.00019918	0.1478	8.0598E-05	0.51306	0.00027978	545.3166876132258	48.037	1.6655	48.037	47.309	48.974	0	0	0	NaN	3.5965	100	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239880000			31717	18519	19919	20030							0.07820799534761136
SSRQIKKTKGH	11	Unmodified	_SSRQIKKTKGH_					0	0	0		MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MSH6|p.R248Tfs*8|1|0.29|ENSG00000116062|chr2:47798717-47798718|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	635.372802734375	2	635.372935	1268.73132	0.43993	0.00027952	-0.70555	-0.00044829	-0.26562	-0.00016877	635.3722073218481	52.511	1.2494	52.171	51.884	53.134	-0.34023					37	23	2	0	0	0	0.74191	1	19607	19607		1.1933	0	1	4254900			31718	9344	19920	20031	30542	30542					0.10770073331582353
SSRQIPLPPL	10	Unmodified	_SSRQIPLPPL_					0	0	0		ENST00000372457.8_1_1:43850548-43850632:-|nuORF	ENST00000372457.8_1_1:43850548-43850632:-|nuORF	ENST00000372457.8_1_1:43850548-43850632:-|nuORF	MSMS	HCT116MG_D190212_S4	4	554.3319091796875	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.411	1	47.041	46.541	47.541	-0.37038								0	0	0	0.95507	1	17536	17536		3.5965	0.31518	1				31719	7457	19921	20032	30543	30543					0.09573693777042536
SSRRILQP	8	Unmodified	_SSRRILQP_					0	0	0		ENST00000307534.8_1_10:91371697-91371793:-|nuORF	ENST00000307534.8_1_10:91371697-91371793:-|nuORF	ENST00000307534.8_1_10:91371697-91371793:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	479.2870178222656	2	478.785433	955.556313	0.27303	0.00013072	0.073471	3.5177E-05	0.3465	0.0001659	478.78539323459825	53.158	0.35971	53.158	52.999	53.359	0					10	6	2	0	0	0	0.85329	1	20371	20371		4.756	0	1	21924000			31720	7032	19922	20033	30544	30544					0.07675698257230579
SSRRPGRRHV	10	Unmodified	_SSRRPGRRHV_					0	0	0			REV__PHC1|p.R854H|1|0.4|ENSG00000111752|chr12:8937259-8937259|G/A|missense_variant	REV__PHC1|p.R854H|1|0.4|ENSG00000111752|chr12:8937259-8937259|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	403.2323913574219	3	403.234149	1206.68062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3276	1	4.3563	3.8563	4.8563	0.028732								0	0	0	0.97045	1	1309	1309		0.15932	0	1		+		31721	17410	19923	20034	30545	30545					0.08554588797255747
SSRRRRRRRRR	11	Unmodified	_SSRRRRRRRRR_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MSMS	HCT116MG_D190212_S2	2	799.49853515625	2	799.499587	1596.98462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.82	1	10.546	10.046	11.046	-0.27365								0	0	0	0.96208	1	3448	3448		0	0	1				31722	5761	19924	20035	30546	30546					0.21000783345084528
SSRTKTSKLV	10	Unmodified	_SSRTKTSKLV_					0	0	0		ENST00000471460.1_1_10:50964809-50966620:-|nuORF;ENSG00000197444|ENST00000374103|OGDHL	ENST00000471460.1_1_10:50964809-50966620:-|nuORF	ENST00000471460.1_1_10:50964809-50966620:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	553.830810546875	2	553.830037	1105.64552	0.53979	0.00029895	-0.14408	-7.9798E-05	0.39571	0.00021915	553.8298308190697	49.044	2.1378	48.728	47.255	49.393	-0.31596					90	40	4	0	0	0	0.88823	2	18254	18254;18488		1.4819	1.4819	1	14346000			31723	6146	19925	20036	30547;30548	30547					0.09692488426071577
SSRTKTSKLV	10	Unmodified	_SSRTKTSKLV_					0	0	0		ENST00000471460.1_1_10:50964809-50966620:-|nuORF;ENSG00000197444|ENST00000374103|OGDHL	ENST00000471460.1_1_10:50964809-50966620:-|nuORF	ENST00000471460.1_1_10:50964809-50966620:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	553.8302001953125	2	553.830037	1105.64552	0.29419	0.00016293	0.061674	3.4157E-05	0.35586	0.00019709	553.8299580988394	49.086	2.9879	48.721	47.422	50.41	-0.365					160	68	3	0	0	0	0.88823	1	18202	18202		1.4819	1.4819	1	46199000			31724	6146	19925	20036	30549	30549					0.09692488426071577
SSRVKRSK	8	Unmodified	_SSRVKRSK_					0	0	0			REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	474.327392578125	2	474.290882	946.567212	0.50174	0.00023797	0.016836	7.9853E-06	0.51858	0.00024596	474.29076165996986	46.644	0.98251	46.272	45.865	46.847	-0.37134					37	25	2	0	0	0	0.33249	1	17279	17279		4.3292	1.7518	1	5945000	+		31725	15843	19926	20037	30550	30550					0.09179100631513393
SSRVRSLLT	9	Unmodified	_SSRVRSLLT_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	HCT116MG_D190212_S1	1	1018.6026611328125	1	1018.60037	1017.59309	0.9754	0.00099354	-0.027137	-2.7642E-05	0.94826	0.0009659	1018.6001372338989	46.311	1.2479	46.311	45.451	46.699	0					43	23	2	0	0	0	0.74917	1	17558	17558		1.8442	1.8442	1	31210000	+		31726	14157	19927	20038	30551	30551					0.08499950083125896
SSSCGKSG	8	Unmodified	_SSSCGKSG_					0	0	0		ENST00000460297.1_1_16:448229-448523:+|nuORF	ENST00000460297.1_1_16:448229-448523:+|nuORF	ENST00000460297.1_1_16:448229-448523:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	712.2433471679688	1	712.29303	711.285753	1.0141	0.00072233	0.42365	0.00030176	1.4377	0.0010241	712.2932591340239	40.148	0.51937	40.076	39.79	40.31	-0.072838					14	9	2	0	0	0	0.88026	2	15064	15064;15137		0	0	1	36846000			31727	8042	19928	20039	30552;30553	30552					-0.08143817790346475
SSSCPSSGGS	10	Unmodified	_SSSCPSSGGS_					0	0	0			REV__ITGB4|p.E666Rfs*103|1|0.29|ENSG00000132470|chr17:75737326-75737326|G/-|frameshift_variant	REV__ITGB4|p.E666Rfs*103|1|0.29|ENSG00000132470|chr17:75737326-75737326|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	428.1614990234375	2	428.161082	854.307611	0.2103	9.004E-05	0.8625	0.00036929	1.0728	0.00045933	428.16134183746965	26.208	0.3106	25.847	25.713	26.024	-0.36164					11	5	3	0	0	0	0.83158	1	9480	9480		9.3831	0.035688	1	40428000	+		31728	16911	19929	20040	30554	30554					-0.1253705783243504
SSSDDDDDDDD	11	Unmodified	_SSSDDDDDDDD_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MSMS	HCT116MG_D190212_S3	3	600.6683959960938	2	600.668374	1199.32219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.196	1	48.88	48.38	49.38	-0.31596								0	0	0	0.96208	1	18520	18520		0	0	1				31729	9604	19930	20041	30555	30555					-0.2694940373191912
SSSDDNSF	8	Unmodified	_SSSDDNSF_					0	0	0			REV__ENST00000461423.1_1_20:37137783-37175090:+|nuORF	REV__ENST00000461423.1_1_20:37137783-37175090:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.6576232910156	2	429.659229	857.303906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.104	1	32.722	32.222	33.222	-0.38223								0	0	0	0.8837	1	12071	12071		0.79363	0	1		+		31730	13302	19931	20042	30556	30556					-0.13045404334650357
SSSDEESGGT	10	Unmodified	_SSSDEESGGT_					0	0	0		nc|ENSG00000165458|O15357-2|INPPL1;INPPL1|p.R1156Gfs*46|2|0.42|ENSG00000165458|chr11:72237704-72237704|C/-|frameshift_variant;ENSG00000165458|ENST00000298229|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	MSMS	HCT116MG_D190212_S4	4	478.1776428222656	2	478.177983	954.341413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.832	1	10.642	10.142	11.142	-0.18973								0	0	0	0.97116	1	3332	3332		0	0	1				31731	4775	19932	20043	30557	30557					-0.13758357859671833
SSSQHGEQQ	9	Unmodified	_SSSQHGEQQ_					0	0	0			REV__SEL1L|p.P787Hfs*16|1|0.32|ENSG00000071537|chr14:81476999-81476999|C/-|frameshift_variant	REV__SEL1L|p.P787Hfs*16|1|0.32|ENSG00000071537|chr14:81476999-81476999|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2101135253906	2	494.209952	986.405351	-0.13713	-6.7772E-05	0.27305	0.00013494	0.13592	6.7172E-05	494.2099673030822	18.658	0.36399	18.295	18.113	18.477	-0.36325					11	6	2	0	0	0	0.090581	1	6435	6435		60.074	6.2411	1	12486000	+		31732	17502	19933	20044	30558	30558					-0.08839532912088544
SSSQHGEQQ	9	Unmodified	_SSSQHGEQQ_					0	0	0			REV__SEL1L|p.P787Hfs*16|1|0.32|ENSG00000071537|chr14:81476999-81476999|C/-|frameshift_variant	REV__SEL1L|p.P787Hfs*16|1|0.32|ENSG00000071537|chr14:81476999-81476999|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	494.209952	986.405351	0.3651	0.00018044	0.022641	1.1189E-05	0.38774	0.00019163	494.2098988996265	18.272	0.2608	18.272	18.089	18.35	0	-0.011515	-0.00013602	NaN	60.074	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2773900	+		31733	17502	19933	20044							-0.08839532912088544
SSSRGPYESR	10	Unmodified	_SSSRGPYESR_					0	0	0		CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR	CON__Q86YZ3	CON__Q86YZ3	MULTI-MSMS	HCT116MG_D190212_S1	1	563.267822265625	2	563.267801	1124.52105	0.38683	0.00021789	-0.46379	-0.00026124	-0.076955	-4.3346E-05	563.2676002051132	15.768	0.26018	15.768	15.64	15.9	0					9	4	3	0	0	0	0.67142	1	5288	5288		22.775	3.518	1	7518400		+	31734	584	19934	20045	30559	30559					-0.03623009061243465
SSSRSLMRRKK	11	Unmodified	_SSSRSLMRRKK_					0	0	0			REV__ENST00000521259.1_1_8:87516185-87516770:+|nuORF	REV__ENST00000521259.1_1_8:87516185-87516770:+|nuORF	MSMS	HCT116MG_D190212_S1	1	668.4859619140625	2	668.385519	1334.75649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.608	1	21.608	21.108	22.108	0								0	0	0	0.95581	1	7610	7610		3.2813	0	1		+		31735	16237	19935	20046	30560	30560					0.10249804862496603
SSSSGVVVQ	9	Unmodified	_SSSSGVVVQ_					0	0	0		ENSG00000203685|ENST00000366788|STUM	ENSG00000203685|ENST00000366788|STUM	ENSG00000203685|ENST00000366788|STUM	MULTI-SECPEP	HCT116MG_D190212_S2	2	425.2373352050781	2	425.219257	848.423961	-0.17344	-7.3751E-05	0.51522	0.00021908	0.34178	0.00014533	425.21940451772844	18.293	0.26144	17.93	17.799	18.061	-0.36325					9	4	3	0	0	0	0.18552	1	6306	6306		37.974	10.345	1	8660400			31736	6312	19936	20047	30561	30561					-0.006313712702308294
SSSSKKKS	8	Unmodified	_SSSSKKKS_					0	0	0			REV__ENSG00000066135|ENST00000372396|KDM4A	REV__ENSG00000066135|ENST00000372396|KDM4A	MULTI-MSMS	HCT116MG_D190212_S1	1	838.4661254882812	1	838.462872	837.455596	0.77541	0.00065015	2.1645	0.0018149	2.9399	0.002465	838.4642563029294	47.387	0.2234	47.387	47.269	47.492	0					10	4	3	0	0	0	0.8698	1	18006	18006		1.8442	0	1	25542000	+		31737	10711	19937	20048	30562	30562					0.030366214837158623
SSSTSYMH	8	Unmodified	_SSSTSYMH_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.T1916Qfs*7|1|0.4|ENSG00000174197|chr15:41749350-41749350|A/-|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	450.18048095703125	2	450.181817	898.349082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.926	1	21.541	21.041	22.041	-0.38503								0	0	0	0.8837	1	7742	7742		13.508	2.684	1				31738	5320	19938	20049	30563	30563					-0.10415877073114643
SSSYQLDP	8	Unmodified	_SSSYQLDP_					0	0	0		LZTS1|p.S186N|1|0.28|ENSG00000061337|chr8:20253374-20253374|C/T|missense_variant;nc|ENSG00000061337|Q9Y250-5|LZTS1;nc|ENSG00000061337|Q9Y250-4|LZTS1;nc|ENSG00000061337|Q9Y250-3|LZTS1;nc|ENSG00000061337|Q9Y250-2|LZTS1;ENSG00000061337|ENST00000381569|LZTS1	LZTS1|p.S186N|1|0.28|ENSG00000061337|chr8:20253374-20253374|C/T|missense_variant	LZTS1|p.S186N|1|0.28|ENSG00000061337|chr8:20253374-20253374|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	896.40087890625	1	896.399603	895.392327	1.0217	0.00091584	0.20428	0.00018312	1.226	0.001099	896.3993359315858	23.294	0.20723	22.908	22.83	23.037	-0.3852					6	3	2	0	0	0	0.21275	1	8329	8329		71.134	0	1	14526000			31739	1116	19939	20050	30564	30564					-0.059553640241801986
SSTGGCCCQFP	11	Unmodified	_SSTGGCCCQFP_					0	0	0			REV__ENST00000225276.9_1_17:74570494-74574884:-|nuORF	REV__ENST00000225276.9_1_17:74570494-74574884:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	545.1941528320312	2	545.193545	1088.37254	0.4908	0.00026758	0.52556	0.00028653	1.0164	0.00055411	545.1937653891258	19.939	0.26154	19.939	19.756	20.018	0					6	4	2	0	0	0	0.73844	1	6955	6955		7.609	0	1	5164600	+		31740	14531	19940	20051	30565	30565					-0.16811522622469965
SSTSSTKC	8	Unmodified	_SSTSSTKC_					0	0	0		NFIA|p.R277C|1|0.36|ENSG00000162599|chr1:61359157-61359157|C/T|missense_variant	NFIA|p.R277C|1|0.36|ENSG00000162599|chr1:61359157-61359157|C/T|missense_variant	NFIA|p.R277C|1|0.36|ENSG00000162599|chr1:61359157-61359157|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	800.3466186523438	1	800.345459	799.338183	1.0688	0.00085541	0.67843	0.00054298	1.7472	0.0013984	800.3460271320208	40.753	0.30901	40.684	40.468	40.777	-0.069626					9	5	2	0	0	0	0.86564	1	15372	15372		2.5775	2.5775	1	31234000			31741	9692	19941	20052	30566	30566					-0.06951279447389425
SSTYPMPFTF	10	Unmodified	_SSTYPMPFTF_					0	0	0			REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	589.2659301757812	2	589.26535	1176.51615	0.54625	0.00032189	-0.13869	-8.1724E-05	0.40756	0.00024016	589.2651957588544	18.739	0.98517	18.559	17.942	18.927	-0.18051					40	18	3	0	0	0	0.64004	1	6206	6206		25.399	25.399	1	9626000	+		31742	13953	19942	20053	30567	30567					-0.06505029248228311
SSTYPMPFTF	10	Unmodified	_SSTYPMPFTF_					0	0	0			REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	589.26535	1176.51615	0.33547	0.00019768	0.13496	7.9529E-05	0.47043	0.00027721	589.2650793570539	19.023	0.57264	18.653	18.211	18.784	-0.3695	0.049932	0.00049774	NaN	25.399	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7488900	+		31743	13953	19942	20053							-0.06505029248228311
SSTYPMPFTF	10	Unmodified	_SSTYPMPFTF_					0	0	0			REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	REV__ENST00000598490.1_1_19:42814241-42814889:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	589.26535	1176.51615	0.53442	0.00031492	-0.55516	-0.00032714	-0.020745	-1.2224E-05	589.2651147815509	18.522	0.78135	18.598	18.205	18.986	0.076334	-0.0052243	-0.00031559	NaN	25.399	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10988000	+		31744	13953	19942	20053							-0.06505029248228311
SSVGLAKGTLP	11	Unmodified	_SSVGLAKGTLP_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2888793945312	2	515.300581	1028.58661	0.1685	8.683E-05	0.29829	0.00015371	0.4668	0.00024054	515.3005988699892	25.478	0.2614	25.109	24.978	25.239	-0.36914					9	4	3	0	0	0	0.71271	1	9133	9133		17.113	1.2657	1	19351000			31745	1835	19943	20054	30568	30568					0.07346012131779389
SSVLGSPV	8	Unmodified	_SSVLGSPV_					0	0	0			REV__PAX7|p.Y303Lfs*61|1|0.09|ENSG00000009709|chr1:18700766-18700767|-/C|frameshift_variant	REV__PAX7|p.Y303Lfs*61|1|0.09|ENSG00000009709|chr1:18700766-18700767|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	373.2080993652344	2	373.208161	744.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.472	1	24.472	23.972	24.972	0								0	0	0	0.43258	1	8762	8762		46.921	14.804	1		+		31746	10508	19944	20055	30569	30569					0.019344490519983992
SSVLITLL	8	Unmodified	_SSVLITLL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.A1865Sfs*12|1|0.08|ENSG00000120800|chr12:101356982-101356983|-/ATCCTTTAGTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MSMS	HCT116MG_D190212_S2	2	423.26068115234375	2	423.270761	844.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.465	1	21.082	20.582	21.582	-0.38288								0	0	0	0.8837	1	7556	7556		2.8892	0	1				31747	2714	19945	20056	30570	30570					0.09848741188375243
SSVNSPPSQP	10	Unmodified	_SSVNSPPSQP_					0	0	0		nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000111218|Q9NR22-2|PRMT8	nc|ENSG00000111218|Q9NR22-2|PRMT8	MULTI-MSMS	HCT116MG_D190212_S4	4	500.7564392089844	2	500.240721	998.466889	0.42232	0.00021126	-0.29254	-0.00014634	0.12979	6.4925E-05	500.2405576516926	21.425	0.51935	21.207	20.855	21.374	-0.21832					10	5	2	0	0	0	0.67188	1	7321	7321		22.736	1.1993	1	5891500			31748	9425	19946	20057	30571	30571					-0.0324060121280354
SSVTRARFYY	10	Unmodified	_SSVTRARFYY_					0	0	0			REV__tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1	REV__tr|U7SNK3|U7SNK3_FUSNUMagnesiumtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01793PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	625.3193359375	2	625.319837	1248.62512	0.33645	0.00021039	-0.62772	-0.00039252	-0.29126	-0.00018213	625.3192960752673	31.06	0.46967	30.799	30.604	31.074	-0.26071					10	8	2	0	0	0	0.81435	1	11356	11356		10.824	0.75	1	6192500	+		31749	17735	19947	20058	30572	30572					0.01075317766299122
SSWSAGENDSY	11	Unmodified	_SSWSAGENDSY_					0	0	0		CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR;HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant	CON__Q86YZ3	CON__Q86YZ3	MULTI-MSMS	HCT116MG_D190212_S1	1	601.7334594726562	2	601.733457	1201.45236	0.40302	0.00024251	0.32579	0.00019604	0.7288	0.00043855	601.7335360877454	18.792	0.46921	18.792	18.61	19.079	0					18	8	3	0	0	0	0.3003	1	6465	6465		63.961	14.028	1	16751000		+	31750	584	19948	20059	30573	30573					-0.14030718151616384
SSWSAGENDSY	11	Unmodified	_SSWSAGENDSY_					0	0	0		CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR;HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant	CON__Q86YZ3	CON__Q86YZ3	MULTI-MSMS	HCT116MG_D190212_S2	2	601.733642578125	2	601.733457	1201.45236	0.67063	0.00040354	-0.30298	-0.00018231	0.36766	0.00022123	601.7332086272908	19.229	0.67664	18.86	18.627	19.304	-0.3695					35	12	4	0	0	0	0.39464	1	6637	6637		55.503	5.5697	1	64269000		+	31751	584	19948	20059	30574	30574					-0.14030718151616384
SSWSAGENDSY	11	Unmodified	_SSWSAGENDSY_					0	0	0		CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR;HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant	CON__Q86YZ3	CON__Q86YZ3	MULTI-MSMS	HCT116MG_D190212_S3	3	601.733642578125	2	601.733457	1201.45236	0.56736	0.0003414	-0.10806	-6.5022E-05	0.45931	0.00027638	601.7332662351138	18.519	0.62491	18.596	18.413	19.038	0.076334					29	11	4	0	0	0	0.3003	1	6296	6296		63.961	14.028	1	40522000		+	31752	584	19948	20059	30575	30575					-0.14030718151616384
SSWSAGENDSY	11	Unmodified	_SSWSAGENDSY_					0	0	0		CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR;HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant	CON__Q86YZ3	CON__Q86YZ3	MULTI-MSMS	HCT116MG_D190212_S4	4	601.7332153320312	2	601.733457	1201.45236	1.1826	0.00071159	-0.82983	-0.00049934	0.35274	0.00021225	601.732750325804	18.77	0.46779	18.589	18.459	18.927	-0.18052					14	8	3	0	0	0	0.24477	1	6324	6324		70.332	20.399	1	6653400		+	31753	584	19948	20059	30576	30576					-0.14030718151616384
SSWVFTHY	8	Unmodified	_SSWVFTHY_					0	0	0			REV__ENST00000548431.1_1_12:54118342-54119026:-|nuORF	REV__ENST00000548431.1_1_12:54118342-54119026:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7371826171875	2	513.737617	1025.46068	0.24511	0.00012592	-0.37713	-0.00019375	-0.13202	-6.7825E-05	513.7372648803614	27.001	0.36872	26.649	26.45	26.818	-0.35254					10	6	2	0	0	0	0.53394	1	9816	9816		38.151	0.17718	1	9718000	+		31754	10529	19949	20060	30577	30577					-0.05103074653652584
SSWVFTHY	8	Unmodified	_SSWVFTHY_					0	0	0			REV__ENST00000548431.1_1_12:54118342-54119026:-|nuORF	REV__ENST00000548431.1_1_12:54118342-54119026:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	513.737617	1025.46068	0.41208	0.0002117	0.37554	0.00019293	0.78762	0.00040463	513.7378846144883	26.527	0.31226	26.527	26.449	26.761	0	-0.06084	0.00056025	NaN	38.151	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4151200	+		31755	10529	19949	20060							-0.05103074653652584
SSWVFTHY	8	Unmodified	_SSWVFTHY_					0	0	0			REV__ENST00000548431.1_1_12:54118342-54119026:-|nuORF	REV__ENST00000548431.1_1_12:54118342-54119026:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	513.737617	1025.46068	0.24511	0.00012592	-0.37713	-0.00019375	-0.13202	-6.7825E-05	513.7372648803614	27.001	0.36872	26.649	26.45	26.818	-0.35254	0.06084	-0.0002131	NaN	38.151	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9718000	+		31756	10529	19949	20060							-0.05103074653652584
SSYCSDDD	8	Unmodified	_SSYCSDDD_					0	0	0			REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	REV__DMXL1|p.N1661Tfs*4|1|0.37|ENSG00000172869|chr5:119166621-119166621|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	446.13653564453125	2	446.137272	890.259992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2594	1	1.3204	0.82035	1.8204	0.060905								0	0	0	0.8837	1	399	399		0	0	1		+		31757	10375	19950	20061	30578	30578					-0.18952756823307482
SSYDQSQVY	9	Unmodified	_SSYDQSQVY_					0	0	0			REV__ENSG00000138496|ENST00000682323|PARP9	REV__ENSG00000138496|ENST00000682323|PARP9	MULTI-MSMS	HCT116MG_D190212_S3	3	538.7288208007812	2	538.730186	1075.44582	0.5277	0.00028429	-2.1088	-0.0011361	-1.5811	-0.00085179	538.7291133973872	35.872	0.22849	35.572	35.449	35.678	-0.30042					7	4	2	0	0	0	0.19461	1	13239	13239		41.84	6.9076	1	4928300	+		31758	12229	19951	20062	30579	30579					-0.08888611312318062
SSYDQSQVY	9	Unmodified	_SSYDQSQVY_					0	0	0			REV__ENSG00000138496|ENST00000682323|PARP9	REV__ENSG00000138496|ENST00000682323|PARP9	MSMS	HCT116MG_D190212_S4	4	538.7294311523438	2	538.730186	1075.44582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.974	1	35.589	35.089	36.089	-0.38566								0	0	0	0.52331	1	13147	13147		27.629	5.8822	1		+		31759	12229	19951	20062	30580	30580					-0.08888611312318062
SSYGGAGGY	9	Unmodified	_SSYGGAGGY_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	HCT116MG_D190212_S2	2	818.332275390625	1	818.331524	817.324247	1.0886	0.00089086	-0.07694	-6.2963E-05	1.0117	0.0008279	818.3313616901189	24.228	0.41607	23.848	23.666	24.082	-0.38003					12	7	2	0	0	0	0.058138	1	8673	8673		70.716	14.174	1	41206000			31760	2587	19952	20063	30581	30581					-0.09172188884178922
SSYGGAGGY	9	Unmodified	_SSYGGAGGY_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	HCT116MG_D190212_S3	3	818.3320922851562	1	818.331524	817.324247	0.87896	0.00071928	-0.17752	-0.00014527	0.70144	0.00057401	818.3314868830233	23.978	0.31275	23.917	23.739	24.051	-0.061447					12	5	3	0	0	0	0.058138	1	8478	8478		70.716	14.174	1	9247900			31761	2587	19952	20063	30582	30582					-0.09172188884178922
STAAGEKRHAR	11	Unmodified	_STAAGEKRHAR_					0	0	0		ENST00000566264.1_1_16:1583702-1584173:+|nuORF	ENST00000566264.1_1_16:1583702-1584173:+|nuORF	ENST00000566264.1_1_16:1583702-1584173:+|nuORF	MSMS	HCT116MG_D190212_S4	4	592.31787109375	2	592.31816	1182.62177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.902	1	32.521	32.021	33.021	-0.38089								0	0	0	0.95196	1	12002	12002		5.2969	0	1				31762	8863	19953	20064	30583	30583					0.03776067712283293
STAANQYI	8	Unmodified	_STAANQYI_					0	0	0			REV__nc|ENSG00000198911|Q12772-2|SREBF2	REV__nc|ENSG00000198911|Q12772-2|SREBF2	MSMS	HCT116MG_D190212_S4	4	434.2137145996094	2	434.213975	866.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.349	1	24.086	23.586	24.586	-0.26308								0	0	0	0.85589	1	8574	8574		18.135	2.2878	1		+		31763	14164	19954	20065	30584	30584					-0.025153539246616674
STAAPAGPA	9	Unmodified	_STAAPAGPA_					0	0	0		ENSG00000139438|ENST00000538780|FAM222A	ENSG00000139438|ENST00000538780|FAM222A	ENSG00000139438|ENST00000538780|FAM222A	MULTI-MSMS	HCT116MG_D190212_S4	4	742.3736572265625	1	742.372995	741.365718	0.82077	0.00060932	-0.015016	-1.1147E-05	0.80575	0.00059817	742.372870511547	22.28	1.3556	22.052	21.728	23.083	-0.22777					36	25	3	0	0	0	0.22969	1	8116	8116		38.151	0	1	32036000			31764	3628	19955	20066	30585	30585					-0.015310081248571805
STAEKKGG	8	Unmodified	_STAEKKGG_					0	0	0			REV__MECOM|p.G614Efs*30|5|0.4|ENSG00000085276|chr3:169115469-169115469|T/-|frameshift_variant	REV__MECOM|p.G614Efs*30|5|0.4|ENSG00000085276|chr3:169115469-169115469|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	389.20947265625	2	389.208692	776.402832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.231	1	46.231	45.731	46.731	0								0	0	0	0.8837	1	17535	17535		5.2307	0.47466	1		+		31765	17013	19956	20067	30586	30586					0.005686634209155272
STAERYVAS	9	Unmodified	_STAERYVAS_					0	0	0		nc|ENSG00000165694|Q6ZUT3-2|FRMD7;ENSG00000165694|ENST00000298542|FRMD7	nc|ENSG00000165694|Q6ZUT3-2|FRMD7	nc|ENSG00000165694|Q6ZUT3-2|FRMD7	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.7571716308594	2	492.243264	982.471974	0.25564	0.00012584	0.33619	0.00016549	0.59183	0.00029132	492.2434067815124	19.231	0.46932	18.862	18.575	19.044	-0.3695					15	8	2	0	0	0	0.2025	1	6543	6543		25.399	7.253	1	6002500			31766	4792	19957	20068	30587	30587					-0.019962973501833403
STAEYKEVTLF	11	Unmodified	_STAEYKEVTLF_					0	0	0			REV__ENSG00000204147|ENST00000647317|ASAH2B	REV__ENSG00000204147|ENST00000647317|ASAH2B	MSMS	HCT116MG_D190212_S4	4	644.3250122070312	2	644.326993	1286.63943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.45	1	39.069	38.569	39.569	-0.38055								0	0	0	0.93717	1	14495	14495		13.042	7.3106	1		+		31767	13962	19958	20069	30588	30588					0.007579254039001171
STAFPSQRADT	11	Unmodified	_STAFPSQRADT_					0	0	0			REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	MULTI-MSMS	HCT116MG_D190212_S4	4	590.7831420898438	2	590.783284	1179.55202	0.7259	0.00042885	-0.052003	-3.0723E-05	0.6739	0.00039813	590.7831371020985	23.909	0.78015	23.651	23.053	23.833	-0.25816					23	14	2	0	0	0	0.65047	1	8280	8280		29.841	3.5724	1	11629000	+		31768	11851	19959	20070	30589	30589					-0.030578557470107626
STAGKFNHPE	10	Unmodified	_STAGKFNHPE_					0	0	0		ENSG00000111906|ENST00000398153|HDDC2;nc|ENSG00000111906|Q7Z4H3-2|HDDC2	ENSG00000111906|ENST00000398153|HDDC2	ENSG00000111906|ENST00000398153|HDDC2	MSMS	HCT116MG_D190212_S4	4	544.261962890625	2	544.261988	1086.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.049	1	34.663	34.163	35.163	-0.38606								0	0	0	0.90892	1	12822	12822		13.906	5.9959	1				31769	2322	19960	20071	30590	30590					-0.030372060845593296
STAGNFLVNP	10	Unmodified	_STAGNFLVNP_					0	0	0		SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1;ENST00000507292.1_1_6:35824956-35836900:-|nuORF	SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant	SRPK1|p.N487Mfs*7|1|0.08|ENSG00000096063|chr6:35869062-35869062|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	510.7613830566406	2	510.261456	1018.50836	0.19088	9.7401E-05	-2.7048	-0.0013801	-2.5139	-0.0012827	510.7605777535483	26.061	0.62457	25.771	25.464	26.088	-0.29022					19	11	2	0	0	0	0.65652	1	9283	9283		24.021	0.23079	1	3648800			31770	1616	19961	20072	30591	30591					-0.00015420453485148755
STAGVEDY	8	Unmodified	_STAGVEDY_					0	0	0		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-MSMS	HCT116MG_D190212_S2	2	841.3584594726562	1	841.357404	840.350128	0.93888	0.00078993	0.3131	0.00026343	1.252	0.0010534	841.3575765746035	31.785	0.25846	31.536	31.406	31.665	-0.24883					7	4	2	0	0	0	0.43493	1	11764	11764		46.921	6.4723	1	39111000			31771	2721	19962	20073	30592	30592					-0.07643339432570428
STAGVTLQAP	10	Unmodified	_STAGVTLQAP_					0	0	0		OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant;OPLAH|p.H870Tfs*28|1|0.64|ENSG00000178814|chr8:144054639-144054639|G/-|frameshift_variant;ENSG00000178814|ENST00000618853|OPLAH	OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant	OPLAH|p.H788Tfs*31|1|0.33|ENSG00000178814|chr8:144055076-144055076|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	472.7557678222656	2	472.756007	943.497461	0.22284	0.00010535	0.28707	0.00013571	0.50991	0.00024106	472.7557484390909	26.316	0.20803	26.015	25.922	26.13	-0.30087					5	3	2	0	0	0	0.48679	1	9389	9389		36.127	0	1	2237000			31772	5518	19963	20074	30593	30593					0.023451771722307058
STAINTVCGAP	11	Unmodified	_STAINTVCGAP_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.R532Pfs*6|1|0.14|ENSG00000214655|chr10:73792129-73792130|-/C|frameshift_variant;ZSWIM8|p.P689Lfs*46|1|0.15|ENSG00000214655|chr10:73792600-73792600|C/-|frameshift_variant	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-MSMS	HCT116MG_D190212_S3	3	518.7330932617188	2	517.252774	1032.491	0.34305	0.00017744	0.18135	9.3801E-05	0.52439	0.00027124	517.2527836378209	25.18	0.26084	25.074	24.943	25.204	-0.10618					14	4	4	0	0	0	0.72373	1	8950	8950		13.042	0	1	59548000			31773	6436	19964	20075	30594	30594					-0.023950840507950488
STALEHQEY	9	Unmodified	_STALEHQEY_					0	0	0		ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.7361450195312	2	539.246003	1076.47745	0.54804	0.00029553	-0.36499	-0.00019682	0.18305	9.871E-05	539.7470655324275	25.864	0.20732	25.494	25.343	25.55	-0.36914					5	3	2	0	0	0	0.1898	1	9310	9310		38.176	8.335	1	5911000			31774	2168	19965	20076	30595	30595					-0.057726185583760525
STALQAHSPA	10	Unmodified	_STALQAHSPA_					0	0	0		ENSG00000130711|ENST00000253008|PRDM12	ENSG00000130711|ENST00000253008|PRDM12	ENSG00000130711|ENST00000253008|PRDM12	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.7571716308594	2	491.751256	981.487959	0.22391	0.00011011	-0.36023	-0.00017714	-0.13632	-6.7036E-05	491.75089703119534	19.127	0.72888	18.758	18.523	19.252	-0.3695					19	13	2	0	0	0	0.19578	1	6543	6543		51.415	0	1	7540600			31775	3097	19966	20077	30596	30596					-0.0035259111328969084
STALSFYFTC	10	Unmodified	_STALSFYFTC_					0	0	0		LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant;LINGO2|p.F564Lfs*32|1|0.12|ENSG00000174482|chr9:27948980-27948980|A/-|frameshift_variant;LINGO2|p.M605*|1|0.27|ENSG00000174482|chr9:27948859-27948859|T/-|frameshift_variant;ENSG00000174482|ENST00000698399|LINGO2	LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant	LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	570.2572631835938	2	570.257525	1138.5005	0.37913	0.0002162	-0.074621	-4.2553E-05	0.30451	0.00017365	570.2575219437646	16.296	0.98809	16.382	15.821	16.809	0.085423					52	18	4	0	0	0	0.71349	1	5316	5316		19.257	0	1	10842000			31776	5332	19967	20078	30597	30597					-0.06321315765239888
STALSFYFTC	10	Unmodified	_STALSFYFTC_					0	0	0		LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant;LINGO2|p.F564Lfs*32|1|0.12|ENSG00000174482|chr9:27948980-27948980|A/-|frameshift_variant;LINGO2|p.M605*|1|0.27|ENSG00000174482|chr9:27948859-27948859|T/-|frameshift_variant;ENSG00000174482|ENST00000698399|LINGO2	LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant	LINGO2|p.S535Pfs*61|1|0.18|ENSG00000174482|chr9:27949069-27949069|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	570.2803344726562	2	570.257525	1138.5005	-0.039211	-2.236E-05	0.41621	0.00023734	0.37699	0.00021498	570.2576463234243	16.436	1.0993	16.272	15.563	16.663	-0.16365					50	21	3	0	0	0	0.71349	2	5243	5173;5243		19.257	4.0085	1	5104300			31777	5332	19967	20078	30598;30599	30599					-0.06321315765239888
STALSLMVTMD	11	Unmodified	_STALSLMVTMD_					0	0	0			REV__ENSG00000180042|ENST00000572493|OR1R1P	REV__ENSG00000180042|ENST00000572493|OR1R1P	MULTI-SECPEP	HCT116MG_D190212_S3	3	584.3110961914062	2	584.78305	1167.55155	0.39904	0.00023335	1.6597	0.00097054	2.0587	0.0012039	584.7839022765602	22.588	0.61301	22.569	22.231	22.844	-0.018869					15	11	2	0	0	0	0.34294	1	7978	7978		26.268	7.0112	1	3857300	+		31778	13650	19968	20079	30600	30600					-0.025527347827164704
STALYWLAPM	10	Unmodified	_STALYWLAPM_					0	0	0			REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	MSMS	HCT116MG_D190212_S3	3	576.7918090820312	2	576.791535	1151.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.678	1	42.374	41.874	42.874	-0.30352								0	0	0	0.94339	1	15906	15906		6.2058	0.47393	1		+		31779	17175	19969	20080	30601	30601					-0.0012044611460169108
STANRRAHLR	10	Unmodified	_STANRRAHLR_					0	0	0		nc|ENSG00000119950|P50539-4|MXI1	nc|ENSG00000119950|P50539-4|MXI1	nc|ENSG00000119950|P50539-4|MXI1	MSMS	HCT116MG_D190212_S4	4	591.3340454101562	2	591.334144	1180.65374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.593	1	33.209	32.709	33.709	-0.38426								0	0	0	0.95507	1	12234	12234		3.5965	0	1				31780	9439	19970	20081	30602	30602					0.07063480186070592
STAPGPGEPHT	11	Unmodified	_STAPGPGEPHT_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MSMS	HCT116MG_D190212_S4	4	525.77392578125	2	525.74617	1049.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.25	1	21.041	20.541	21.541	-0.20959								0	0	0	0.92235	1	7325	7325		17.113	0.1706	1		+		31781	11778	19971	20082	30603	30603					-0.04497198838521399
STAPGTPSWKI	11	Unmodified	_STAPGTPSWKI_					0	0	0			REV__ENSG00000092377|ENST00000383032|TBL1Y	REV__ENSG00000092377|ENST00000383032|TBL1Y	MSMS	HCT116MG_D190212_S3	3	572.8016967773438	2	572.803488	1143.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.857	1	29.62	29.12	30.12	-0.23655								0	0	0	0.92235	1	10861	10861		17.113	4.0704	1		+		31782	11017	19972	20083	30604	30604					0.02637110643422602
STAPGWFMKW	10	Unmodified	_STAPGWFMKW_					0	0	0			REV__ENST00000396253.7_1_11:18327777-18327885:-|nuORF	REV__ENST00000396253.7_1_11:18327777-18327885:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	605.4467163085938	2	605.789327	1209.5641	0.59718	0.00036176	-1.958	-0.0011861	-1.3608	-0.00082435	605.7890151772706	24.841	0.88535	24.757	24.237	25.122	-0.083694					27	16	2	0	0	0	0.27864	1	8838	8838		29.082	11.969	1	5044700	+		31783	15352	19973	20084	30605	30605					-0.03229910537515934
STAPHPST	8	Unmodified	_STAPHPST_					0	0	0			REV__nc|ENSG00000161649|Q6UXG3-5|CD300LG	REV__nc|ENSG00000161649|Q6UXG3-5|CD300LG	MULTI-MSMS	HCT116MG_D190212_S3	3	797.3778686523438	1	797.378808	796.371532	0.86621	0.00069069	-0.14673	-0.000117	0.71948	0.0005737	797.3786286449753	29.277	2.7076	29.055	27.431	30.139	-0.22195					70	51	2	0	0	0	0.6854	1	10842	10842		24.674	0	1	4567300	+		31784	12855	19974	20085	30606	30606					-0.034799096131791885
STAPITIWRSE	11	Unmodified	_STAPITIWRSE_					0	0	0		nc|ENSG00000167525|Q8NCQ7-2|PROCA1;nc|ENSG00000167525|Q8NCQ7-3|PROCA1;nc|ENSG00000167525|Q8NCQ7|PROCA1;ENSG00000167525|ENST00000682792|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	MSMS	HCT116MG_D190212_S3	3	630.8355102539062	2	630.832777	1259.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.382	1	24.299	23.799	24.799	-0.083694								0	0	0	0.93717	1	8656	8656		13.042	0.80181	1				31785	4927	19975	20086	30607	30607					0.031561672178895606
STAPPQDLSH	10	Unmodified	_STAPPQDLSH_					0	0	0			REV__ENST00000528882.5_1_11:57067274-57087552:-|nuORF	REV__ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MSMS	HCT116MG_D190212_S3	3	526.75341796875	2	526.753995	1051.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.342	1	18.418	17.918	18.918	0.076334								0	0	0	0.76907	1	6223	6223		32.786	3.7041	1		+		31786	12558	19976	20087	30608	30608					-0.030249123214844076
STAPPQDLSH	10	Unmodified	_STAPPQDLSH_					0	0	0			REV__ENST00000528882.5_1_11:57067274-57087552:-|nuORF	REV__ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MSMS	HCT116MG_D190212_S4	4	526.7540283203125	2	526.753995	1051.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.529	1	18.349	17.849	18.849	-0.18052								0	0	0	0.76907	1	6225	6225		32.786	10.049	1		+		31787	12558	19976	20087	30609	30609					-0.030249123214844076
STAPPTYPD	9	Unmodified	_STAPPTYPD_					0	0	0			REV__nc|ENSG00000187583|Q494U1-3|PLEKHN1	REV__nc|ENSG00000187583|Q494U1-3|PLEKHN1	MULTI-SECPEP	HCT116MG_D190212_S4	4	475.2468566894531	2	474.71909	947.423627	0.2269	0.00010771	-2.2356	-0.0010613	-2.0087	-0.00095356	474.71718916565015	17.983	0.83125	17.808	17.22	18.051	-0.17501					23	15	2	0	0	0	0.23771	1	6052	6052		10.074	1.3285	1	1637600	+		31788	13925	19977	20088	30610	30610					-0.05218790990090838
STAPQQLSQP	10	Unmodified	_STAPQQLSQP_					0	0	0			REV__nc|ENSG00000115966|P15336-2|ATF2	REV__nc|ENSG00000115966|P15336-2|ATF2	MULTI-MSMS	HCT116MG_D190212_S4	4	528.7698974609375	2	528.769645	1055.52474	0.3956	0.00020918	0.62772	0.00033192	1.0233	0.0005411	528.7698063851592	19.045	0.31193	18.858	18.713	19.025	-0.18674					8	5	2	0	0	0	0.65652	1	6459	6459		24.021	2.4836	1	1370700	+		31789	11565	19978	20089	30611	30611					-0.0008033928738768736
STAPSARPTPP	11	Unmodified	_STAPSARPTPP_					0	0	0			REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	541.758056640625	2	541.285463	1080.55637	0.51743	0.00028008	1.3748	0.00074418	1.8923	0.0010243	541.2859473106666	27.116	0.57144	26.804	26.587	27.158	-0.3114					16	10	3	0	0	0	0.70991	1	9821	9821		18.146	1.0335	1	2274800	+		31790	16773	19979	20090	30612	30612					0.019316534665676954
STAPTWYRRN	10	Unmodified	_STAPTWYRRN_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S4	4	626.3151245117188	2	626.315086	1250.61562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.614	1	31.244	30.744	31.744	-0.37026								0	0	0	0.89062	1	11481	11481		17.113	5.6182	1		+		31791	13681	19980	20091	30613	30613					0.00033549480758665595
STAPVEKLLIV	11	Unmodified	_STAPVEKLLIV_					0	0	0			REV__ENST00000390345.2_3_7:38393383-38393572:-|nuORF	REV__ENST00000390345.2_3_7:38393383-38393572:-|nuORF	MSMS	HCT116MG_D190212_S4	4	585.3609619140625	2	585.360639	1168.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.376	1	23.128	22.628	23.628	-0.24775								0	0	0	0.94538	1	8181	8181		8.7454	2.5396	1		+		31792	15299	19981	20092	30614	30614					0.1291200040552667
STAQILHESP	10	Unmodified	_STAQILHESP_					0	0	0			REV__ENST00000489895.5_1_3:52514938-52524786:+|nuORF	REV__ENST00000489895.5_1_3:52514938-52524786:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	542.2666015625	2	541.77747	1081.54039	0.30704	0.00016635	-0.31514	-0.00017074	-0.008099	-4.3878E-06	541.776994295761	20.914	0.26022	20.949	20.766	21.027	0.034473					7	4	2	0	0	0	0.75557	1	7228	7228		24.021	1.2843	1	3940800	+		31793	10516	19982	20093	30615	30615					0.0028794722968541464
STAQKQIEEWK	11	Unmodified	_STAQKQIEEWK_					0	0	0		FNBP4|p.R977Q|1|0.35|ENSG00000109920|chr11:47719962-47719962|C/T|missense_variant	FNBP4|p.R977Q|1|0.35|ENSG00000109920|chr11:47719962-47719962|C/T|missense_variant	FNBP4|p.R977Q|1|0.35|ENSG00000109920|chr11:47719962-47719962|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	674.3504638671875	2	674.348791	1346.68303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.223	1	36.839	36.339	37.339	-0.3839								0	0	0	0.93295	1	13652	13652		15.248	0	1				31794	9161	19983	20094	30616	30616					0.02355534901039391
STAQPQPQPQP	11	Unmodified	_STAQPQPQPQP_					0	0	0		ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3|ZFHX4;ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant	ENSG00000091656|ENST00000651372|ZFHX4	ENSG00000091656|ENST00000651372|ZFHX4	MULTI-SECPEP	HCT116MG_D190212_S3	3	590.2830810546875	2	589.793652	1177.57275	0.38974	0.00022987	0.75192	0.00044348	1.1417	0.00067335	589.7937061957224	16.937	0.57245	17.021	16.704	17.277	0.084467					29	10	4	0	0	0	0.34567	1	5744	5744		19.362	12.732	1	24978000			31795	1568	19984	20095	30617	30617					-0.008932653673355162
STAQSDYNRKT	11	Unmodified	_STAQSDYNRKT_					0	0	0		nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1;HIVEP1|p.I2404Sfs*57|1|0.23|ENSG00000095951|chr6:12163508-12163508|G/-|frameshift_variant;ENSG00000095951|ENST00000379388|HIVEP1	nc|ENSG00000095951|P15822-2|HIVEP1	nc|ENSG00000095951|P15822-2|HIVEP1	MULTI-MSMS	HCT116MG_D190212_S3	3	635.8050537109375	2	635.804748	1269.59494	0.44654	0.00028392	0.12667	8.0538E-05	0.57322	0.00036445	635.8047890655475	23.907	1.4062	23.845	23.217	24.624	-0.061449					65	26	4	0	0	0	0.7259	1	8310	8310		12.241	0.74595	1	40138000			31796	1615	19985	20096	30618	30618					-0.029070856895941688
STARCVGCSAW	11	Unmodified	_STARCVGCSAW_					0	0	0		ENST00000482665.1_1_16:334415-335240:+|nuORF	ENST00000482665.1_1_16:334415-335240:+|nuORF	ENST00000482665.1_1_16:334415-335240:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	570.7489624023438	2	570.749876	1139.4852	0.18718	0.00010683	1.4244	0.00081296	1.6116	0.0009198	570.7507044303954	17.213	0.82877	17.043	16.5	17.329	-0.17047					22	15	2	0	0	0	0.71182	1	5599	5599		17.443	0.32975	1	5295700			31797	8264	19986	20097	30619	30619					-0.07896505834082745
STAREYALKI	10	Unmodified	_STAREYALKI_					0	0	0		nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1;nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	MSMS	HCT116MG_D190212_S4	4	576.3228759765625	2	576.324588	1150.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.4	1	35.014	34.514	35.514	-0.38606								0	0	0	0.95507	1	12964	12964		3.5965	0	1				31798	3225	19987	20098	30620	30620					0.06533086051786086
STARTRTRRAR	11	Unmodified	_STARTRTRRAR_					0	0	0		UBE2O|p.T8Rfs*128|1|0.18|ENSG00000175931|chr17:76453121-76453121|G/-|frameshift_variant	UBE2O|p.T8Rfs*128|1|0.18|ENSG00000175931|chr17:76453121-76453121|G/-|frameshift_variant	UBE2O|p.T8Rfs*128|1|0.18|ENSG00000175931|chr17:76453121-76453121|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	666.3912963867188	2	666.389982	1330.76541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.408	1	38.107	37.607	38.607	-0.30137								0	0	0	0.95636	1	14227	14227		2.9952	0.71247	1				31799	18676	19988	20099	30621	30621					0.11325914543226645
STASLEKMP	9	Unmodified	_STASLEKMP_					0	0	0		CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.E3670G|1|0.3|ENSG00000164309|chr5:79752693-79752693|A/G|missense_variant;ENST00000506603.5_1_5:79034050-79057839:+|nuORF	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	482.74591064453125	2	482.244418	962.474282	0.089508	4.3165E-05	0.19044	9.1839E-05	0.27995	0.000135	482.24446108261924	26.507	0.31195	26.206	26.026	26.338	-0.30087					11	5	3	0	0	0	0.64512	1	9493	9493		8.5933	0	1	7578600			31800	488	19989	20100	30622	30622					-0.008455849367237533
STASRERLKRS	11	Unmodified	_STASRERLKRS_					0	0	0		nc|ENSG00000157657|Q5T7W0-3|ZNF618;nc|ENSG00000157657|Q5T7W0-2|ZNF618;nc|ENSG00000157657|Q5T7W0-4|ZNF618;ZNF618|p.N872Mfs*52|2|0.38|ENSG00000157657|chr9:114049913-114049913|A/-|frameshift_variant;ENSG00000157657|ENST00000374126|ZNF618	nc|ENSG00000157657|Q5T7W0-3|ZNF618	nc|ENSG00000157657|Q5T7W0-3|ZNF618	MSMS	HCT116MG_D190212_S4	4	430.9134521484375	3	430.912742	1289.7164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.402	1	16.238	15.738	16.738	-0.16364								0	0	0	0.9613	1	5366	5366		0.40827	0	1				31801	4339	19990	20101	30623	30623					0.08312581463610513
STASRTPFLA	10	Unmodified	_STASRTPFLA_					0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	HCT116MG_D190212_S4	4	350.8572082519531	3	350.857463	1049.55056	0.13142	4.6109E-05	-0.28519	-0.00010006	-0.15378	-5.3954E-05	350.85733048906553	24.501	0.25929	24.233	24.082	24.341	-0.26881					6	4	2	0	0	0	0.77375	1	8656	8656		14.218	0.6033	1	3227200	+		31802	14219	19991	20102	30624	30624					0.027765549549030766
STATNQPGHTE	11	Unmodified	_STATNQPGHTE_					0	0	0			REV__MUC16|p.A2118T|1|0.17|ENSG00000181143|chr19:8974787-8974787|C/T|missense_variant	REV__MUC16|p.A2118T|1|0.17|ENSG00000181143|chr19:8974787-8974787|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	571.7576293945312	2	571.757266	1141.49998	0.24874	0.00014222	0.21086	0.00012056	0.4596	0.00026278	571.7572795099379	14.944	0.6774	14.625	14.088	14.766	-0.31952					27	12	4	0	0	0	0.59037	1	4814	4814		36.506	16.092	1	3387700	+		31803	17042	19992	20103	30625	30625					-0.06511019160757314
STATNQPGHTE	11	Unmodified	_STATNQPGHTE_					0	0	0			REV__MUC16|p.A2118T|1|0.17|ENSG00000181143|chr19:8974787-8974787|C/T|missense_variant	REV__MUC16|p.A2118T|1|0.17|ENSG00000181143|chr19:8974787-8974787|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	571.7575073242188	2	571.757266	1141.49998	0.53619	0.00030657	0.054638	3.1239E-05	0.59083	0.00033781	571.7571103723601	14.6	0.61221	14.68	14.422	15.035	0.079683					24	11	4	0	0	0	0.59037	1	4673	4673		36.506	9.283	1	6398900	+		31804	17042	19992	20103	30626	30626					-0.06511019160757314
STATNQPGHTE	11	Unmodified	_STATNQPGHTE_					0	0	0			REV__MUC16|p.A2118T|1|0.17|ENSG00000181143|chr19:8974787-8974787|C/T|missense_variant	REV__MUC16|p.A2118T|1|0.17|ENSG00000181143|chr19:8974787-8974787|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	571.75732421875	2	571.757266	1141.49998	-0.058554	-3.3478E-05	0.8879	0.00050766	0.82934	0.00047418	571.7574875666045	14.575	0.61179	14.414	14.165	14.777	-0.16089					22	12	3	0	0	0	0.43821	1	4601	4601		51.63	21.789	1	3072300	+		31805	17042	19992	20103	30627	30627					-0.06511019160757314
STATRITPAP	10	Unmodified	_STATRITPAP_					0	0	0			REV__ENST00000602130.5_1_19:41808830-41812642:+|nuORF	REV__ENST00000602130.5_1_19:41808830-41812642:+|nuORF	MSMS	HCT116MG_D190212_S2	2	507.7825622558594	2	507.782556	1013.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.736	1	27.394	26.894	27.894	-0.34201								0	0	0	0.86471	1	10087	10087		20.454	1.1966	1		+		31806	16750	19993	20104	30628	30628					0.044325549548943854
STATSTDFSP	10	Unmodified	_STATSTDFSP_					0	0	0			REV__ENSG00000140323|ENST00000267889|DISP2	REV__ENSG00000140323|ENST00000267889|DISP2	MULTI-MSMS	HCT116MG_D190212_S3	3	507.823486328125	2	507.224736	1012.43492	0.19469	9.8751E-05	4.1579	0.002109	4.3526	0.0022078	507.2268762889191	16.074	0.25994	16.159	16.081	16.341	0.085424					6	4	2	0	0	0	0.72678	1	5291	5291		18.146	3.3081	1	509420	+		31807	12291	19994	20105	30629	30629					-0.0708001368660689
STAVGQAH	8	Unmodified	_STAVGQAH_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	770.3804931640625	1	770.379143	769.371866	0.68145	0.00052497	0.65643	0.0005057	1.3379	0.0010307	770.3794563650007	24.971	0.83348	24.865	24.371	25.204	-0.10618					19	15	2	0	0	0	0.6854	1	8859	8859		24.674	3.8027	1	3856100			31808	3119	19995	20106	30630	30630					-0.022044898933359036
STAVGQAH	8	Unmodified	_STAVGQAH_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	770.379143	769.371866	1.0331	0.00079589	-0.16221	-0.00012496	0.87091	0.00067093	770.3789616879242	25.108	1.299	24.828	24.123	25.422	-0.27958	-0.018408	-0.00025952	NaN	24.674	28	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3376300			31809	3119	19995	20106							-0.022044898933359036
STAWRVPLLRP	11	Unmodified	_STAWRVPLLRP_					0	0	0		SYNGAP1|p.K114Sfs*20|2|0.25|ENSG00000197283|chr6:33432199-33432199|G/-|frameshift_variant	SYNGAP1|p.K114Sfs*20|2|0.25|ENSG00000197283|chr6:33432199-33432199|G/-|frameshift_variant	SYNGAP1|p.K114Sfs*20|2|0.25|ENSG00000197283|chr6:33432199-33432199|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	648.380859375	2	648.382771	1294.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.092	1	37.791	37.291	38.291	-0.30137								0	0	0	0.95636	1	14099	14099		2.9952	0	1				31810	18250	19996	20107	30631	30631					0.11540449342351167
STAWVATGGP	10	Unmodified	_STAWVATGGP_					0	0	0			REV__nc|ENSG00000162004|A2IDD5-2|CCDC78	REV__nc|ENSG00000162004|A2IDD5-2|CCDC78	MULTI-SECPEP	HCT116MG_D190212_S3	3	473.27203369140625	2	473.735074	945.455596	0.30764	0.00014574	0.52759	0.00024994	0.83523	0.00039568	473.7355825197446	37.925	0.37516	37.623	37.51	37.885	-0.30137					22	14	2	0	0	0	0.30526	1	14055	14055		6.2058	1.4498	1	9835100	+		31811	12866	19997	20108	30632	30632					-0.01931378516269433
STAWVEEPPQ	10	Unmodified	_STAWVEEPPQ_					0	0	0			REV__KIAA1549|p.N577Kfs*17|1|0.09|ENSG00000122778|chr7:138917895-138917896|-/T|frameshift_variant	REV__KIAA1549|p.N577Kfs*17|1|0.09|ENSG00000122778|chr7:138917895-138917896|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	572.3040771484375	2	572.269478	1142.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.936	1	24.667	24.167	25.167	-0.26881								0	0	0	0.92917	1	8812	8812		9.3831	0	1		+		31812	11744	19998	20109	30633	30633					-0.04115759007231645
STAWYEEFFPR	11	Unmodified	_STAWYEEFFPR_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MSMS	HCT116MG_D190212_S3	3	716.831787109375	2	716.830234	1431.64592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.822	1	23.76	23.26	24.26	-0.061449								0	0	0	0.94012	1	8430	8430		11.495	3.3392	1		+		31813	11675	19999	20110	30634	30634					-0.052641366447460314
STAYYPAGTQL	11	Unmodified	_STAYYPAGTQL_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MSMS	HCT116MG_D190212_S3	3	586.772705078125	2	586.285128	1170.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.976	1	19.045	18.545	19.545	0.069159								0	0	0	0.90489	1	6479	6479		19.362	0.10495	1				31814	1932	20000	20111	30635	30635					-0.022751859731215518
STCAYGEHY	9	Unmodified	_STCAYGEHY_					0	0	0			REV__nc|ENSG00000215301|O00571-2|DDX3X	REV__nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	HCT116MG_D190212_S3	3	515.6988525390625	2	515.700374	1029.3862	0.10815	5.5773E-05	-1.4815	-0.00076401	-1.3733	-0.00070824	515.6995526945268	32.038	0.36378	31.76	31.578	31.942	-0.27841					10	6	2	0	0	0	0.65706	1	11780	11780		7.9102	0.62092	1	5653600	+		31815	10347	20001	20112	30636	30636					-0.12732205527345286
STCYCCSCCCC	11	Unmodified	_STCYCCSCCCC_					0	0	0			REV__CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant	REV__CSF1R|p.S493Vfs*119|1|0.25|ENSG00000182578|chr5:150069907-150069907|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	589.6317749023438	2	589.632236	1177.24992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.63	1	35.487	34.987	35.987	-0.14245								0	0	0	0.96149	1	13297	13297		0.30703	0.30703	1		+		31816	10297	20002	20113	30637	30637					-0.33161510003697003
STDAFKKIG	9	Unmodified	_STDAFKKIG_					0	0	0		DNAJB14|p.A145S|1|0.04|ENSG00000164031|chr4:99923058-99923058|C/A|missense_variant	DNAJB14|p.A145S|1|0.04|ENSG00000164031|chr4:99923058-99923058|C/A|missense_variant	DNAJB14|p.A145S|1|0.04|ENSG00000164031|chr4:99923058-99923058|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	483.76641845703125	2	483.766374	965.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.601	1	24.221	23.721	24.721	-0.38003								0	0	0	0.27628	1	8822	8822		41.84	1.8899	1				31817	711	20003	20114	30638	30638					0.03405767551919325
STDAFKKIG	9	Unmodified	_STDAFKKIG_					0	0	0		DNAJB14|p.A145S|1|0.04|ENSG00000164031|chr4:99923058-99923058|C/A|missense_variant	DNAJB14|p.A145S|1|0.04|ENSG00000164031|chr4:99923058-99923058|C/A|missense_variant	DNAJB14|p.A145S|1|0.04|ENSG00000164031|chr4:99923058-99923058|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	483.7668151855469	2	483.766374	965.518196	0.26566	0.00012852	-0.11753	-5.6857E-05	0.14813	7.1662E-05	483.7661855573198	24.273	0.41511	24.015	23.833	24.248	-0.25816					15	7	3	0	0	0	0.14171	1	8526	8526		49.933	2.1843	1	16794000			31818	711	20003	20114	30639	30639					0.03405767551919325
STDAFKKIG	9	Unmodified	_STDAFKKIG_					0	0	0		DNAJB14|p.A145S|1|0.04|ENSG00000164031|chr4:99923058-99923058|C/A|missense_variant	DNAJB14|p.A145S|1|0.04|ENSG00000164031|chr4:99923058-99923058|C/A|missense_variant	DNAJB14|p.A145S|1|0.04|ENSG00000164031|chr4:99923058-99923058|C/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	483.766374	965.518196	0.25139	0.00012161	-0.20055	-9.7017E-05	0.050842	2.4596E-05	483.76619331233707	23.997	0.20892	23.997	23.837	24.045	0	0.053968	-0.00015173	NaN	49.933	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6330700			31819	711	20003	20114							0.03405767551919325
STDAMLPSQ	9	Unmodified	_STDAMLPSQ_					0	0	0			REV__ENSG00000170684|ENST00000303809|ZNF296	REV__ENSG00000170684|ENST00000303809|ZNF296	MSMS	HCT116MG_D190212_S1	1	475.21826171875	2	475.2184	948.422247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.12	1	23.12	22.62	23.62	0								0	0	0	0.67173	1	8219	8219		20.454	1.0146	1		+		31820	13313	20004	20115	30640	30640					-0.05402748350491038
STDDGYIDL	9	Unmodified	_STDDGYIDL_					0	0	0		nc|ENSG00000089063|Q96A57|TMEM230;ENSG00000089063|ENST00000342308|TMEM230	nc|ENSG00000089063|Q96A57|TMEM230	nc|ENSG00000089063|Q96A57|TMEM230	MULTI-MSMS	HCT116MG_D190212_S2	2	998.4304809570312	1	998.431297	997.424021	0.82152	0.00082023	-0.17599	-0.00017571	0.64553	0.00064452	998.4310587502331	47.691	0.46502	47.558	47.273	47.738	-0.13281					11	8	2	0	0	0	0.013464	1	18192	18192		104.8	50.026	1	15481000			31821	1512	20005	20116	30641	30641					-0.0747941606088034
STDDGYIDL	9	Unmodified	_STDDGYIDL_					0	0	0		nc|ENSG00000089063|Q96A57|TMEM230;ENSG00000089063|ENST00000342308|TMEM230	nc|ENSG00000089063|Q96A57|TMEM230	nc|ENSG00000089063|Q96A57|TMEM230	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	998.431297	997.424021	0.36032	0.00035976	-1.4015	-0.0013994	-1.0412	-0.0010396	998.4294687909791	47.856	0.72858	47.541	47.256	47.984	-0.31525	-0.0084964	-0.00012482	NaN	104.8	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12192000			31822	1512	20005	20116							-0.0747941606088034
STDDLECWDE	10	Unmodified	_STDDLECWDE_					0	0	0		nc|ENSG00000197614|Q13361-2|MFAP5	nc|ENSG00000197614|Q13361-2|MFAP5	nc|ENSG00000197614|Q13361-2|MFAP5	MSMS	HCT116MG_D190212_S3	3	606.7193603515625	2	606.721701	1211.42885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.132	1	23.093	22.593	23.593	-0.03968								0	0	0	0.92272	1	8152	8152		10.824	2.0785	1				31823	9603	20006	20117	30642	30642					-0.16840899980434187
STDDPMQF	8	Unmodified	_STDDPMQF_					0	0	0		ENSG00000133805|ENST00000396553|AMPD3;nc|ENSG00000133805|Q01432-5|AMPD3;nc|ENSG00000133805|Q01432-4|AMPD3;ENST00000534047.5_1_11:10518329-10527428:+|nuORF;nc|ENSG00000133805|Q01432-6|AMPD3;nc|ENSG00000116748|P23109-2|AMPD1;ENSG00000116748|ENST00000520113|AMPD1	ENSG00000133805|ENST00000396553|AMPD3	ENSG00000133805|ENST00000396553|AMPD3	MULTI-MSMS	HCT116MG_D190212_S3	3	940.3724365234375	1	940.371674	939.364398	0.60554	0.00056944	-0.45997	-0.00043254	0.14557	0.00013689	940.3715741118896	45.517	0.26105	45.206	45.044	45.305	-0.31094					7	4	2	0	0	0	0.050259	1	17071	17071		123.1	87.052	1	2547500			31824	3250	20007	20118	30643	30643					-0.1077101027591425
STDESADWE	9	Unmodified	_STDESADWE_					0	0	0			REV__ENSG00000174243|ENST00000308025|DDX23	REV__ENSG00000174243|ENST00000308025|DDX23	MSMS	HCT116MG_D190212_S3	3	520.2694091796875	2	520.196176	1038.3778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.589	1	15.674	15.174	16.174	0.085423								0	0	0	0.76902	1	5112	5112		4.3292	1.0479	1		+		31825	13474	20008	20119	30644	30644					-0.13985480962969632
STDESNLNQDL	11	Unmodified	_STDESNLNQDL_					0	0	0		nc|ENSG00000107890|Q9UPS8-2|ANKRD26;ENSG00000107890|ENST00000376087|ANKRD26	nc|ENSG00000107890|Q9UPS8-2|ANKRD26	nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MSMS	HCT116MG_D190212_S1	1	618.2725830078125	2	618.272946	1234.53134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.102	1	23.102	22.602	23.602	0								0	0	0	0.88801	1	8211	8211		21.537	2.28	1				31826	2135	20009	20120	30645	30645					-0.07654490917298062
STDGKHWWEY	10	Unmodified	_STDGKHWWEY_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1;nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MULTI-MSMS	HCT116MG_D190212_S2	2	654.78515625	2	654.785827	1307.5571	0.27501	0.00018007	-0.36697	-0.00024029	-0.091962	-6.0215E-05	654.7856029528663	43.35	0.30968	43.277	43.149	43.458	-0.073376					12	5	3	0	0	0	0.037822	1	16446	16446		118.21	72.51	1	62431000			31827	3028	20010	20121	30646	30646					-0.08437551884389904
STDGKHWWEY	10	Unmodified	_STDGKHWWEY_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1;nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MULTI-MSMS	HCT116MG_D190212_S2	2	437.19390869140625	3	436.859643	1307.5571	-0.22244	-9.7176E-05	0.036339	1.5875E-05	-0.1861	-8.1301E-05	437.1940254852638	43.374	0.25834	43.301	43.149	43.407	-0.073372					8	4	2	0	0	0	0.51975	1	16459	16459		33.821	11.712	1	17930000			31828	3028	20010	20121	30647	30647					-0.08437551884389904
STDGKHWWEY	10	Unmodified	_STDGKHWWEY_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1;nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	654.785827	1307.5571	0.64091	0.00041966	-0.119	-7.7917E-05	0.52192	0.00034174	655.287014304388	43.446	0.20754	43.446	43.316	43.524	0	0.084537	0.00022749	NaN	118.21	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20024000			31829	3028	20010	20121							-0.08437551884389904
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	HCT116MG_D190212_S1	1	529.795166015625	2	529.779482	1057.54441	0.17179	9.1012E-05	0.12287	6.5097E-05	0.29467	0.00015611	529.7794202547403	48.654	0.46251	48.654	48.408	48.871	0					28	8	4	0	0	0	0.050578	2	18524	18474;18524		74.423	14.033	1	141340000			31830	6228	20011	20122	30648;30649	30649					0.017940367234132282
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	529.7796020507812	2	529.779482	1057.54441	0.54977	0.00029126	-0.059766	-3.1663E-05	0.49	0.00025959	529.7793415485005	48.709	0.55749	48.565	48.286	48.844	-0.1437					32	10	4	0	0	0	0.065014	1	18586	18586		67.344	6.9543	1	807710000			31831	6228	20011	20122	30650	30650					0.017940367234132282
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	HCT116MG_D190212_S2	2	1058.55224609375	1	1058.55169	1057.54441	0.71091	0.00075254	-0.28955	-0.0003065	0.42137	0.00044604	1058.5512557582715	48.76	0.20322	48.616	48.49	48.693	-0.1437					5	3	2	0	0	0	0.0066639	1	18651	18651		123.1	72.241	1	30199000			31832	6228	20011	20122	30651	30651					0.017940367234132282
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	HCT116MG_D190212_S3	3	529.7796020507812	2	529.779482	1057.54441	0.64187	0.00034005	-0.16882	-8.9436E-05	0.47305	0.00025061	529.7793459424491	48.995	0.52605	48.679	48.449	48.975	-0.31596					23	9	3	0	0	0	0.065014	1	18404	18404		67.344	16.489	1	34707000			31833	6228	20011	20122	30652	30652					0.017940367234132282
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	HCT116MG_D190212_S4	4	529.7796630859375	2	529.779482	1057.54441	0.27703	0.00014677	0.91206	0.00048319	1.1891	0.00062996	529.7796094714352	49.075	0.37286	48.71	48.493	48.866	-0.365					14	7	3	0	0	0	0.1037	1	18193	18193		57.471	15.377	1	5971800			31834	6228	20011	20122	30653	30653					0.017940367234132282
STDHVIRMY	9	Unmodified	_STDHVIRMY_					0	0	0		BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant;BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant;BRWD1|p.A1391Rfs*13|1|0.54|ENSG00000185658|chr21:39210022-39210022|T/-|frameshift_variant;BRWD1|p.M1415Nfs*7|1|0.21|ENSG00000185658|chr21:39206228-39206229|-/T|frameshift_variant;BRWD1|p.R1901Kfs*6|1|0.34|ENSG00000185658|chr21:39197367-39197368|-/T|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant	BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	561.2728881835938	2	561.274041	1120.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.319	1	32.319	31.819	32.819	0								0	0	0	0.5054	1	11922	11922		28.495	14.588	1				31835	281	20012	20123	30654	30654					-0.021916889225394698
STDHVIRMY	9	Unmodified	_STDHVIRMY_					0	0	0		BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant;BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant;BRWD1|p.A1391Rfs*13|1|0.54|ENSG00000185658|chr21:39210022-39210022|T/-|frameshift_variant;BRWD1|p.M1415Nfs*7|1|0.21|ENSG00000185658|chr21:39206228-39206229|-/T|frameshift_variant;BRWD1|p.R1901Kfs*6|1|0.34|ENSG00000185658|chr21:39197367-39197368|-/T|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant	BRWD1|p.D556Vfs*9|1|0.08|ENSG00000185658|chr21:39264678-39264679|-/TCCA|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	561.776123046875	2	561.274041	1120.53353	0.19063	0.000107	-2.5012	-0.0014039	-2.3106	-0.0012969	561.7758632257501	32.229	0.20789	32.229	32.118	32.326	0					7	3	3	0	0	0	0.099713	1	11908	11908		51.415	42.67	1	5870400			31836	281	20012	20123	30655	30655					-0.021916889225394698
STDKAEYTFY	10	Unmodified	_STDKAEYTFY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	612.7748413085938	2	612.774593	1223.53463	0.45987	0.0002818	-0.43294	-0.00026529	0.026935	1.6505E-05	612.7747555861044	40.173	0.41544	40.1	39.842	40.258	-0.072838					13	7	3	0	0	0	0.099369	1	15162	15162		74.2	34.242	1	19474000			31837	8520	20013	20124	30656	30656					-0.06819196072660816
STDKAEYTFY	10	Unmodified	_STDKAEYTFY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	612.77490234375	2	612.774593	1223.53463	0.41316	0.00025318	-0.084178	-5.1582E-05	0.32899	0.00020159	612.7743850113233	40.439	0.31207	40.137	40.007	40.319	-0.30161					8	5	2	0	0	0	0.34996	1	15038	15038		46.022	13.717	1	7307300			31838	8520	20013	20124	30657	30657					-0.06819196072660816
STDKAEYTFY	10	Unmodified	_STDKAEYTFY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330|RBPJ;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	612.7752075195312	2	612.774593	1223.53463	0.79717	0.00048849	-0.16961	-0.00010393	0.62756	0.00038455	612.7744290601377	40.612	0.20734	40.233	40.13	40.338	-0.37828					5	3	2	0	0	0	0.68623	1	14930	14930		21.537	11.463	1	2182800			31839	8520	20013	20124	30658	30658					-0.06819196072660816
STDKASMEVRY	11	Unmodified	_STDKASMEVRY_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MSMS	HCT116MG_D190212_S1	1	643.8071899414062	2	643.805902	1285.59725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.661	1	27.661	27.161	28.161	0								0	0	0	0.78515	1	10047	10047		34.79	22.55	1				31840	2805	20014	20125	30659	30659					-0.034123732760917846
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	HCT116MG_D190212_S1	1	626.2987060546875	2	626.298236	1250.58192	0.71355	0.00044689	-0.011914	-7.4617E-06	0.70163	0.00043943	626.2982300305137	36.172	0.21133	36.172	36.046	36.257	0					8	3	3	0	0	0	0.00033205	1	13492	13492		190.03	148.08	1	15931000			31841	4983	20015	20126	30660	30660					-0.03334916801645704
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	HCT116MG_D190212_S2	2	626.2988891601562	2	626.298236	1250.58192	0.77396	0.00048473	0.063092	3.9515E-05	0.83705	0.00052425	626.2981800125052	36.225	0.31035	36.097	35.916	36.226	-0.12799					12	5	3	0	0	0	0.00054456	1	13545	13545		185.27	139.53	1	87485000			31842	4983	20015	20126	30661	30661					-0.03334916801645704
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	HCT116MG_D190212_S2	2	417.86798095703125	3	417.867916	1250.58192	0.26311	0.00010995	0.19104	7.9832E-05	0.45416	0.00018978	417.8679964549375	36.225	0.20673	36.097	35.967	36.174	-0.12799					7	3	3	0	0	0	0.54524	1	13554	13554		23.016	7.4772	1	25448000			31843	4983	20015	20126	30662	30662					-0.03334916801645704
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MATCH	HCT116MG_D190212_S1	1		3	417.867916	1250.58192	0.0020238	8.4566E-07	-0.50545	-0.00021121	-0.50342	-0.00021036	417.867697993829	36.228	0.21133	36.228	36.046	36.257	0	0.065612	-0.00074889	NaN	23.016	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5285300			31844	4983	20015	20126							-0.03334916801645704
STDKQMGY	8	Oxidation (M)	_STDKQM(Oxidation (M))GY_		STDKQM(1)GY		STDKQM(140)GY	0	0	1		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S1	1	473.20257568359375	2	473.20275	944.390947	0.26628	0.000126	-0.19328	-9.1461E-05	0.072997	3.4542E-05	473.20259515731146	16.759	0.31252	16.759	16.629	16.942	0					13	5	3	0	0	0	0.038852	1	5664	5664		136.33	81.56	1	30940000			31845	1446	20016	20127	30663	30663		23			-0.0834732138457639
STDKQMGY	8	Oxidation (M)	_STDKQM(Oxidation (M))GY_		STDKQM(1)GY		STDKQM(140)GY	0	0	1		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2028503417969	2	473.20275	944.390947	0.26626	0.000126	0.12558	5.9423E-05	0.39184	0.00018542	473.20272138601285	17.093	0.36497	16.743	16.613	16.978	-0.34933					12	6	2	0	0	0	0.038852	1	5817	5817		136.33	80.156	1	35503000			31846	1446	20016	20127	30664	30664		23			-0.0834732138457639
STDKQMGY	8	Oxidation (M)	_STDKQM(Oxidation (M))GY_		STDKQM(1)GY		STDKQM(140)GY	0	0	1		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S2	2	945.3986206054688	1	945.398223	944.390947	0.68759	0.00065005	-0.30679	-0.00029004	0.3808	0.00036001	945.3978455757416	17.144	0.20832	16.795	16.665	16.873	-0.34933					5	3	2	0	0	0	0.036435	1	5824	5824		139.14	95.28	1	7312700			31847	1446	20016	20127	30665	30665		23			-0.0834732138457639
STDKQMGY	8	Unmodified	_STDKQMGY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S1	1	465.2053527832031	2	465.205292	928.396032	0.18958	8.8194E-05	-0.018279	-8.5036E-06	0.1713	7.969E-05	465.20528706481923	21.88	0.78274	21.88	21.698	22.481	0					33	14	4	0	0	0	0.0044015	1	7707	7707		181.33	106.9	1	374290000			31848	1446	20016	20128	30666	30666					-0.07103017521967558
STDKQMGY	8	Unmodified	_STDKQMGY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S1	1	929.4038696289062	1	929.403308	928.396032	0.91261	0.00084818	-0.19545	-0.00018165	0.71716	0.00066653	929.403144566997	21.88	0.41729	21.88	21.698	22.115	0					17	7	4	0	0	0	0.024744	1	7720	7720		214.14	128.78	1	72628000			31849	1446	20016	20128	30667	30667					-0.07103017521967558
STDKQMGY	8	Unmodified	_STDKQMGY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S2	2	465.20550537109375	2	465.205292	928.396032	0.35752	0.00016632	0.013174	6.1288E-06	0.37069	0.00017245	465.20525868313734	22.308	0.98689	21.922	21.739	22.726	-0.3852					46	18	5	0	0	0	0.0044015	1	7889	7889		181.33	106.9	1	1030199999.9999999			31850	1446	20016	20128	30668	30668					-0.07103017521967558
STDKQMGY	8	Unmodified	_STDKQMGY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S2	2	929.4041137695312	1	929.403308	928.396032	1.0954	0.0010181	-0.26065	-0.00024225	0.8348	0.00077587	929.4030659267232	22.307	0.51854	21.922	21.791	22.31	-0.3852					24	9	4	0	0	0	0.024744	1	7896	7896		214.14	139.71	1	454870000			31851	1446	20016	20128	30669	30669					-0.07103017521967558
STDKQMGY	8	Unmodified	_STDKQMGY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S3	3	465.2052001953125	2	465.205292	928.396032	0.32189	0.00014975	0.085865	3.9945E-05	0.40776	0.00018969	465.2052031068964	21.755	0.47232	21.773	21.535	22.008	0.018446					18	8	4	0	0	0	0.0044015	1	7599	7599		181.33	106.9	1	36281000			31852	1446	20016	20128	30670	30670					-0.07103017521967558
STDKQMGY	8	Unmodified	_STDKQMGY_					0	0	0		ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	ENSG00000084623|ENST00000677711|EIF3I	MULTI-MSMS	HCT116MG_D190212_S3	3	929.4049072265625	1	929.403308	928.396032	0.95464	0.00088725	0.085251	7.9233E-05	1.0399	0.00096648	929.403186331222	21.755	0.262	21.773	21.641	21.903	0.018446					7	4	2	0	0	0	0.0027527	1	7608	7608		180.01	119.62	1	7073900			31853	1446	20016	20128	30671	30671					-0.07103017521967558
STDLEQVHQFT	11	Unmodified	_STDLEQVHQFT_					0	0	0		nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF	nc|ENSG00000107104|Q14678-2|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	MULTI-MSMS	HCT116MG_D190212_S3	3	652.809814453125	2	652.809499	1303.60444	0.82167	0.00053639	-0.010002	-6.5291E-06	0.81167	0.00052986	652.809297941176	28.797	0.67662	28.575	28.265	28.942	-0.22195					22	12	2	0	0	0	0.7259	1	10431	10431		12.241	0	1	4521800			31854	2102	20017	20129	30672	30672					-0.03521317404079127
STDLEQVHQFT	11	Unmodified	_STDLEQVHQFT_					0	0	0		nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF	nc|ENSG00000107104|Q14678-2|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	MULTI-MSMS	HCT116MG_D190212_S4	4	652.81005859375	2	652.809499	1303.60444	0.53926	0.00035204	-0.1482	-9.6748E-05	0.39106	0.00025529	652.8094067050254	28.837	0.62288	28.496	28.211	28.834	-0.34059					17	11	2	0	0	0	0.7259	1	10361	10361		12.241	0	1	5413600			31855	2102	20017	20129	30673	30673					-0.03521317404079127
STDLEQVHQFT	11	Unmodified	_STDLEQVHQFT_					0	0	0		nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF	nc|ENSG00000107104|Q14678-2|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	652.809499	1303.60444	0.82167	0.00053639	-0.010002	-6.5291E-06	0.81167	0.00052986	652.809297941176	28.797	0.67662	28.575	28.265	28.942	-0.22195	0.039221	0.00010532	NaN	12.241	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4521800			31856	2102	20017	20129							-0.03521317404079127
STDLEQVHQFT	11	Unmodified	_STDLEQVHQFT_					0	0	0		nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF	nc|ENSG00000107104|Q14678-2|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	652.809499	1303.60444	0.53926	0.00035204	-0.1482	-9.6748E-05	0.39106	0.00025529	652.8094067050254	28.837	0.62288	28.496	28.211	28.834	-0.34059	-0.039221	-7.5115E-05	NaN	12.241	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5413600			31857	2102	20017	20129							-0.03521317404079127
STDLLQIVAA	10	Unmodified	_STDLLQIVAA_					0	0	0			REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.7923583984375	2	515.792589	1029.57063	0.090731	4.6799E-05	-0.75907	-0.00039152	-0.66834	-0.00034472	515.7925484256116	38.732	0.36485	38.43	38.248	38.613	-0.30137					9	6	2	0	0	0	0.59588	1	14361	14361		28.495	2.2264	1	8428000	+		31858	14865	20018	20130	30674	30674					0.057023058948516336
STDLLQIVAA	10	Unmodified	_STDLLQIVAA_					0	0	0			REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	515.792589	1029.57063	0.17327	8.9373E-05	-0.19737	-0.0001018	-0.024097	-1.2429E-05	515.7924395801965	38.441	0.31678	38.348	38.167	38.483	-0.09301	-0.041359	7.3639E-05	NaN	28.495	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39854000	+		31859	14865	20018	20130							0.057023058948516336
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	HCT116MG_D190212_S1	1	1105.46923828125	1	1105.46841	1104.46113	0.3557	0.00039321	0.18055	0.0001996	0.53625	0.00059281	1105.4686893303624	39.085	0.29741	39.085	38.903	39.201	0					11	5	3	0	0	0	0.0051486	1	14656	14656		136.33	20.641	1	61345000			31860	6109;149	20019	20131	30675	30675					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	HCT116MG_D190212_S2	2	1105.4691162109375	1	1105.46841	1104.46113	0.82394	0.00091084	-0.28258	-0.00031239	0.54136	0.00059845	1105.4679735943023	39.122	0.41319	39.045	38.864	39.277	-0.077835					20	7	4	0	0	0	0.0051486	1	14715	14715		136.33	32.585	1	195640000			31861	6109;149	20019	20131	30676	30676					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MSMS	HCT116MG_D190212_S2	2	552.8301391601562	2	553.237844	1104.46113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.2	1	39.123	38.623	39.623	-0.077835								0	0	0	0.016928	1	14746	14746		96.285	44.016	1				31862	6109;149	20019	20131	30677	30677					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	HCT116MG_D190212_S3	3	1105.4691162109375	1	1105.46841	1104.46113	0.39198	0.00043332	0.23801	0.00026311	0.62998	0.00069643	1105.4684481652657	39.355	0.42469	39.054	38.82	39.245	-0.30137					23	7	4	0	0	0	0.0051486	1	14590	14590		136.33	32.585	1	80564000			31863	6109;149	20019	20131	30678	30678					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2383422851562	2	553.237844	1104.46113	0.41401	0.00022905	0.21286	0.00011776	0.62687	0.00034681	553.2378978141386	39.321	0.3204	39.02	38.872	39.192	-0.30137					14	5	3	0	0	0	0.016701	1	14595	14595		99.799	45.966	1	24721000			31864	6109;149	20019	20131	30679	30679					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	HCT116MG_D190212_S4	4	1105.4691162109375	1	1105.46841	1104.46113	0.57553	0.00063623	-0.38085	-0.00042101	0.19469	0.00021522	1105.4676270280688	39.454	0.2877	39.074	38.884	39.172	-0.38055					10	7	2	0	0	0	0.0066233	1	14498	14498		123.45	30.959	1	10566000			31865	6109;149	20019	20131	30680	30680					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MSMS	HCT116MG_D190212_S4	4	553.2387084960938	2	553.237844	1104.46113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.48	1	39.1	38.6	39.6	-0.38055								0	0	0	0.1323	1	14507	14507		52.268	33.011	1				31866	6109;149	20019	20131	30681	30681					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	553.237844	1104.46113	0.50518	0.00027948	0.62701	0.00034689	1.1322	0.00062637	553.2380432736305	39.43	0.12838	39.049	38.971	39.1	-0.38055	0.014664	0.0003787	NaN	99.799	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1659100			31867	6109;149	20019	20131							-0.08691744515135724
STDLQDYTYY	10	Unmodified	_STDLQDYTYY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MSMS	HCT116MG_D190212_S3	3	634.7703247070312	2	634.769508	1267.52446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.851	1	44.541	44.041	45.041	-0.30927								0	0	0	0.80906	1	16776	16776		27.629	16.805	1				31868	6109;149	20020	20132	30682	30682					-0.09859803797894529
STDMRITAQ	9	Unmodified	_STDMRITAQ_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-MSMS	HCT116MG_D190212_S3	3	511.750244140625	2	511.750398	1021.48624	0.11941	6.1106E-05	0.22479	0.00011503	0.34419	0.00017614	511.7504635322083	22.536	0.26028	22.517	22.439	22.699	-0.018869					6	4	2	0	0	0	0.22946	1	7935	7935		38.176	3.7738	1	7116700	+		31869	11828	20021	20133	30683	30683					-0.023639681935492263
STDMRITAQ	9	Unmodified	_STDMRITAQ_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	511.750398	1021.48624	0.22333	0.00011429	-0.59495	-0.00030446	-0.37161	-0.00019017	511.7501559749984	23.088	0.20813	22.703	22.57	22.778	-0.3852	0.086657	-0.00020246	NaN	38.176	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9514000	+		31870	11828	20021	20133							-0.023639681935492263
STDNFTRILEY	11	Unmodified	_STDNFTRILEY_					0	0	0		ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant;ITGA5|p.L399Wfs*26|2|0.4|ENSG00000161638|chr12:54405196-54405196|G/-|frameshift_variant;ENSG00000161638|ENST00000293379|ITGA5	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	679.8330688476562	2	679.832974	1357.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.54	1	51.54	51.04	52.04	0								0	0	0	5.3123E-05	1	19694	19694		115.82	77.646	1				31871	4489	20022	20134	30684	30684					-0.013124578528959319
STDNFTRILEY	11	Unmodified	_STDNFTRILEY_					0	0	0		ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant;ITGA5|p.L399Wfs*26|2|0.4|ENSG00000161638|chr12:54405196-54405196|G/-|frameshift_variant;ENSG00000161638|ENST00000293379|ITGA5	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	ITGA5|p.Y300Afs*75|1|0.46|ENSG00000161638|chr12:54407655-54407658|GTAA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	679.8330688476562	2	679.832974	1357.6514	0.41208	0.00028014	0.29435	0.00020011	0.70642	0.00048025	680.3348136359905	51.764	0.25577	51.581	51.424	51.68	-0.18368					9	4	3	0	0	0	1.6977E-31	1	19883	19883		271.74	181.6	1	23951000			31872	4489	20022	20134	30685	30685					-0.013124578528959319
STDNSPTVHNA	11	Unmodified	_STDNSPTVHNA_					0	0	0			REV__ENST00000317357.9_1_6:107956536-107979693:+|nuORF	REV__ENST00000317357.9_1_6:107956536-107979693:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	572.2486572265625	2	571.757266	1141.49998	0.53619	0.00030657	0.054638	3.1239E-05	0.59083	0.00033781	571.7571103723601	14.6	0.61221	14.68	14.422	15.035	0.079683					24	11	4	0	0	0	0.36423	1	4808	4808		8.1555	8.1555	1	6398900	+		31873	14868	20023	20135	30686	30686					-0.06511019160734577
STDPEALHY	9	Unmodified	_STDPEALHY_					0	0	0		ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	516.73486328125	2	516.735271	1031.45599	0.14645	7.5674E-05	-0.14906	-7.7026E-05	-0.0026168	-1.3522E-06	516.7350789724496	32.354	0.25978	32.124	31.995	32.254	-0.23009					8	4	2	0	0	0	0.035402	1	11996	11996		81.864	49.559	1	25596000			31874	6080	20024	20136	30687	30687					-0.058480035870843494
STDPEALHY	9	Unmodified	_STDPEALHY_					0	0	0		ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	MSMS	HCT116MG_D190212_S3	3	516.7352294921875	2	516.735271	1031.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.515	1	32.236	31.736	32.736	-0.27841								0	0	0	0.013363	1	11919	11919		101.72	50.867	1				31875	6080	20024	20136	30688	30688					-0.058480035870843494
STDPEALHY	9	Unmodified	_STDPEALHY_					0	0	0		ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	ENST00000508415.1_1_4:7790587-7795535:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	516.735595703125	2	516.735271	1031.45599	0.2511	0.00012975	0.34392	0.00017772	0.59502	0.00030747	516.7352805979306	32.596	0.31153	32.217	32.053	32.364	-0.37924					7	5	2	0	0	0	0.035402	2	11888	11876;11888		81.864	49.559	1	3784500			31876	6080	20024	20136	30689;30690	30690					-0.058480035870843494
STDPQHHAY	9	Unmodified	_STDPQHHAY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S1	1	528.2308959960938	2	528.230687	1054.44682	0.2873	0.00015176	0.03976	2.1003E-05	0.32706	0.00017276	528.2307174823919	16.343	0.26014	16.343	16.213	16.473	0					10	4	3	0	0	0	0.0051486	1	5504	5504		136.33	86.4	1	19017000			31877	5292	20025	20137	30691	30691					-0.07822352152766143
STDPQHHAY	9	Unmodified	_STDPQHHAY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S1	1	352.4894104003906	3	352.48955	1054.44682	-0.12546	-4.4223E-05	0.0013372	4.7136E-07	-0.12412	-4.3751E-05	352.48941964961284	16.343	0.15602	16.343	16.265	16.421	0					4	2	2	0	0	0	0.34203	1	5522	5522		24.021	16.919	1	2786800			31878	5292	20025	20137	30692	30692					-0.07822352152766143
STDPQHHAY	9	Unmodified	_STDPQHHAY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S2	2	528.230712890625	2	528.230687	1054.44682	0.43515	0.00022986	0.036262	1.9155E-05	0.47142	0.00024902	528.2306196928712	16.78	0.41639	16.438	16.256	16.672	-0.34183					14	7	3	0	0	0	0.0048275	1	5670	5670		139.14	90.793	1	58916000			31879	5292	20025	20137	30693	30693					-0.07822352152766143
STDPQHHAY	9	Unmodified	_STDPQHHAY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S2	2	352.48968505859375	3	352.48955	1054.44682	-0.12059	-4.2507E-05	0.052312	1.8439E-05	-0.06828	-2.4068E-05	352.4895010117311	16.78	0.26033	16.438	16.308	16.568	-0.34183					6	4	2	0	0	0	0.1569	1	5689	5689		41.84	24.397	1	7988100			31880	5292	20025	20137	30694	30694					-0.07822352152766143
STDPREALQY	10	Unmodified	_STDPREALQY_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	HCT116MG_D190212_S1	1	590.2857666015625	2	590.28566	1178.55677	0.65689	0.00038775	0.18627	0.00010995	0.84315	0.0004977	590.285738565202	34.34	0.52118	34.34	34.024	34.545	0					19	9	3	0	0	0	0.031798	1	12714	12714		100.71	56.936	1	28051000			31881	1856	20026	20138	30695	30695					-0.025369716042405344
STDPREALQY	10	Unmodified	_STDPREALQY_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	HCT116MG_D190212_S2	2	590.7874145507812	2	590.28566	1178.55677	0.80048	0.00047251	-0.012967	-7.6542E-06	0.78751	0.00046486	590.2856216549334	34.46	0.56956	34.285	33.967	34.537	-0.17512					25	10	4	0	0	0	0.031798	1	12778	12778		100.71	56.936	1	153150000			31882	1856	20026	20138	30696	30696					-0.025369716042405344
STDPREALQY	10	Unmodified	_STDPREALQY_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	HCT116MG_D190212_S3	3	590.285888671875	2	590.28566	1178.55677	0.37324	0.00022032	0.0030027	1.7724E-06	0.37624	0.00022209	590.285602956635	34.691	0.57168	34.394	34.077	34.648	-0.29707					31	10	4	0	0	0	0.031798	1	12724	12724		100.71	56.936	1	50805000			31883	1856	20026	20138	30697	30697					-0.025369716042405344
STDPREALQY	10	Unmodified	_STDPREALQY_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;NUP93|p.F699Lfs*19|1|0.34|ENSG00000102900|chr16:56839025-56839025|T/-|frameshift_variant;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	HCT116MG_D190212_S4	4	590.285888671875	2	590.28566	1178.55677	0.60701	0.00035831	-0.34534	-0.00020385	0.26167	0.00015446	590.2852620050602	34.735	0.55919	34.349	33.983	34.542	-0.38591					26	10	4	0	0	0	0.031798	1	12666	12666		100.71	56.936	1	18161000			31884	1856	20026	20138	30698	30698					-0.025369716042405344
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;AXIN1|p.T79Pfs*5|1|0.56|ENSG00000103126|chr16:346792-346792|G/-|frameshift_variant;AXIN1|p.G265Efs*149|1|0.09|ENSG00000103126|chr16:346234-346234|G/-|frameshift_variant;AXIN1|p.P432Qfs*48|1|0.43|ENSG00000103126|chr16:298211-298211|G/-|frameshift_variant;AXIN1|p.K641Rfs*64|1|0.46|ENSG00000103126|chr16:297089-297089|T/-|frameshift_variant	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	HCT116MG_D190212_S1	1	497.235595703125	2	497.235439	992.456324	0.36721	0.00018259	-0.14993	-7.4552E-05	0.21728	0.00010804	497.23540781284015	21.515	0.26113	21.515	21.333	21.594	0					8	4	2	0	0	0	0.016412	1	7575	7575		100.09	47.822	1	11849000			31885	1875	20027	20139	30699	30699					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;AXIN1|p.T79Pfs*5|1|0.56|ENSG00000103126|chr16:346792-346792|G/-|frameshift_variant;AXIN1|p.G265Efs*149|1|0.09|ENSG00000103126|chr16:346234-346234|G/-|frameshift_variant;AXIN1|p.P432Qfs*48|1|0.43|ENSG00000103126|chr16:298211-298211|G/-|frameshift_variant;AXIN1|p.K641Rfs*64|1|0.46|ENSG00000103126|chr16:297089-297089|T/-|frameshift_variant	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	497.2354431152344	2	497.235439	992.456324	0.25095	0.00012478	0.17956	8.9284E-05	0.43051	0.00021406	497.2354901693977	21.89	0.31245	21.505	21.375	21.687	-0.38503					15	5	4	0	0	0	0.0041644	1	7730	7730		148.27	72.507	1	75438000			31886	1875	20027	20139	30700	30700					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;AXIN1|p.T79Pfs*5|1|0.56|ENSG00000103126|chr16:346792-346792|G/-|frameshift_variant;AXIN1|p.G265Efs*149|1|0.09|ENSG00000103126|chr16:346234-346234|G/-|frameshift_variant;AXIN1|p.P432Qfs*48|1|0.43|ENSG00000103126|chr16:298211-298211|G/-|frameshift_variant;AXIN1|p.K641Rfs*64|1|0.46|ENSG00000103126|chr16:297089-297089|T/-|frameshift_variant	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	HCT116MG_D190212_S2	2	993.4638061523438	1	993.463601	992.456324	0.57909	0.0005753	-0.15064	-0.00014965	0.42845	0.00042565	993.4631130954118	21.89	0.20844	21.505	21.375	21.583	-0.38503					6	3	2	0	0	0	0.14362	1	7752	7752		49.554	25.534	1	12922000			31887	1875	20027	20139	30701	30701					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;AXIN1|p.T79Pfs*5|1|0.56|ENSG00000103126|chr16:346792-346792|G/-|frameshift_variant;AXIN1|p.G265Efs*149|1|0.09|ENSG00000103126|chr16:346234-346234|G/-|frameshift_variant;AXIN1|p.P432Qfs*48|1|0.43|ENSG00000103126|chr16:298211-298211|G/-|frameshift_variant;AXIN1|p.K641Rfs*64|1|0.46|ENSG00000103126|chr16:297089-297089|T/-|frameshift_variant	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	HCT116MG_D190212_S3	3	497.2356872558594	2	497.235439	992.456324	0.2812	0.00013983	0.18689	9.2928E-05	0.46809	0.00023275	497.2355656678456	21.435	0.58054	21.453	21.219	21.799	0.018448					20	10	3	0	0	0	0.21251	1	7452	7452		39.957	19.504	1	27386000			31888	1875	20027	20139	30702	30702					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;AXIN1|p.T79Pfs*5|1|0.56|ENSG00000103126|chr16:346792-346792|G/-|frameshift_variant;AXIN1|p.G265Efs*149|1|0.09|ENSG00000103126|chr16:346234-346234|G/-|frameshift_variant;AXIN1|p.P432Qfs*48|1|0.43|ENSG00000103126|chr16:298211-298211|G/-|frameshift_variant;AXIN1|p.K641Rfs*64|1|0.46|ENSG00000103126|chr16:297089-297089|T/-|frameshift_variant	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MSMS	HCT116MG_D190212_S4	4	497.2353820800781	2	497.235439	992.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.677	1	21.459	20.959	21.959	-0.21832								0	0	0	0.031974	1	7497	7497		80.676	32.33	1				31889	1875	20027	20139	30703	30703					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;AXIN1|p.T79Pfs*5|1|0.56|ENSG00000103126|chr16:346792-346792|G/-|frameshift_variant;AXIN1|p.G265Efs*149|1|0.09|ENSG00000103126|chr16:346234-346234|G/-|frameshift_variant;AXIN1|p.P432Qfs*48|1|0.43|ENSG00000103126|chr16:298211-298211|G/-|frameshift_variant;AXIN1|p.K641Rfs*64|1|0.46|ENSG00000103126|chr16:297089-297089|T/-|frameshift_variant	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	993.463601	992.456324	0.52797	0.00052452	-2.0866	-0.002073	-1.5587	-0.0015485	993.4633735215658	21.385	0.15907	21.403	21.323	21.483	0.018446	-0.050803	-0.001854	NaN	49.554	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1999200			31890	1875	20027	20139							-0.040205838672363825
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	HCT116MG_D190212_S1	1	533.7745361328125	2	533.774396	1065.53424	0.48801	0.00026049	0.25322	0.00013516	0.74123	0.00039565	533.7744298914942	35.603	0.4659	35.603	35.424	35.89	0					16	8	3	0	0	0	0.0034649	1	13250	13250		171.46	99.542	1	91085000			31891	2414	20028	20140	30704	30704					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	HCT116MG_D190212_S2	2	533.7752075195312	2	533.774396	1065.53424	0.58065	0.00030994	0.050567	2.6991E-05	0.63122	0.00033693	533.7743667512	35.663	0.87609	35.521	35.283	36.16	-0.14245					37	16	5	0	0	0	0.0045823	1	13293	13293		168.54	96.615	1	855610000			31892	2414	20028	20140	30705	30705					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	HCT116MG_D190212_S2	2	1066.541748046875	1	1066.54152	1065.53424	0.64724	0.00069031	0.11251	0.00011999	0.75975	0.0008103	1066.5415803288045	35.658	0.35972	35.516	35.335	35.695	-0.14245					17	6	4	0	0	0	0.00058548	1	13312	13312		184.36	98.714	1	126970000			31893	2414	20028	20140	30706	30706					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	HCT116MG_D190212_S3	3	533.7745971679688	2	533.774396	1065.53424	0.49062	0.00026188	-0.042033	-2.2436E-05	0.44859	0.00023944	533.7743357806012	35.882	0.54976	35.582	35.388	35.938	-0.30041					35	11	5	0	0	0	0.014847	1	13203	13203		132.38	60.457	1	342040000			31894	2414	20028	20140	30707	30707					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	HCT116MG_D190212_S3	3	1066.542724609375	1	1066.54152	1065.53424	0.57925	0.00061779	0.16613	0.00017718	0.74538	0.00079497	1066.5415502630192	35.9	0.22849	35.6	35.449	35.678	-0.30042					10	4	3	0	0	0	0.0034649	1	13244	13244		171.46	99.542	1	18873000			31895	2414	20028	20140	30708	30708					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	HCT116MG_D190212_S4	4	533.7747802734375	2	533.774396	1065.53424	0.68151	0.00036377	-0.20725	-0.00011063	0.47426	0.00025315	533.774235468356	35.983	0.58861	35.598	35.433	36.022	-0.38558					32	12	5	0	0	0	0.0026164	1	13130	13130		173.69	105.61	1	143460000			31896	2414	20028	20140	30709	30709					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	HCT116MG_D190212_S4	4	1066.5400390625	1	1066.54152	1065.53424	0.81576	0.00087005	-0.62173	-0.0006631	0.19404	0.00020695	1066.5402244151762	35.983	0.23407	35.598	35.491	35.725	-0.38558					7	4	2	0	0	0	0.019498	1	13166	13166		121.35	62.667	1	5736500			31897	2414	20028	20140	30710	30710					0.004094289981594557
STDPYLDDFY	10	Unmodified	_STDPYLDDFY_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MSMS	HCT116MG_D190212_S1	1	618.2589721679688	2	618.258776	1234.503	0.57376	0.00035473	-0.14042	-8.6816E-05	0.43334	0.00026792	618.2583561582105	29.682	0.31178	29.682	29.529	29.841	0					7	5	2	0	0	0	0.82332	1	10880	10880		10.074	0	1	4264200			31898	4888	20029	20141	30711	30711					-0.10487188826618876
STDQVRMWGAP	11	Unmodified	_STDQVRMWGAP_					0	0	0			REV__ENST00000534188.1_1_11:6423796-6426005:-|nuORF	REV__ENST00000534188.1_1_11:6423796-6426005:-|nuORF	MSMS	HCT116MG_D190212_S3	3	624.2362060546875	2	624.295504	1246.57646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.529	1	20.563	20.063	21.063	0.034473								0	0	0	0.95023	1	7105	7105		6.2058	0.9089	1		+		31899	13097	20030	20142	30712	30712					-0.03696918865102816
STDREGKGFY	10	Unmodified	_STDREGKGFY_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MSMS	HCT116MG_D190212_S4	4	580.2704467773438	2	580.272552	1158.53055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.644	1	14.483	13.983	14.983	-0.16089								0	0	0	0.92607	1	4656	4656		10.074	3.3508	1		+		31900	11489	20031	20143	30713	30713					-0.04237240775682949
STDSETLRY	9	Unmodified	_STDSETLRY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MSMS	HCT116MG_D190212_S2	2	536.2509155273438	2	536.251286	1070.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.039	1	29.754	29.254	30.254	-0.28453								0	0	0	0.006	1	11027	11027		114.2	46.121	1				31901	3483	20032	20144	30714	30714					-0.04440635903938528
STDSETLRY	9	Unmodified	_STDSETLRY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	HCT116MG_D190212_S3	3	536.2510986328125	2	536.251286	1070.48802	0.5815	0.00031183	-0.3062	-0.0001642	0.2753	0.00014763	536.2510137022422	30.083	0.26325	29.834	29.703	29.966	-0.24901					13	4	4	0	0	0	0.0096523	1	10954	10954		114.2	36.052	1	12839000			31902	3483	20032	20144	30715	30715					-0.04440635903938528
STDSETLRY	9	Unmodified	_STDSETLRY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MSMS	HCT116MG_D190212_S4	4	536.2514038085938	2	536.251286	1070.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.271	1	29.914	29.414	30.414	-0.3571								0	0	0	0.036088	1	10967	10967		76.825	29.076	1				31903	3483	20032	20144	30716	30716					-0.04440635903938528
STDSQQEFP	9	Unmodified	_STDSQQEFP_					0	0	0			REV__ENST00000479182.5_1_3:113003463-113005706:+|nuORF	REV__ENST00000479182.5_1_3:113003463-113005706:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	519.9154052734375	2	519.722361	1037.43017	0.39574	0.00020567	-0.31597	-0.00016422	0.079766	4.1456E-05	519.7223071064491	21.545	0.15631	21.545	21.437	21.594	0					4	2	2	0	0	0	0.26009	1	7590	7590		1.4819	0	1	2599800	+		31904	15937	20033	20145	30717	30717					-0.08704897829352376
STDSRMWIEFR	11	Unmodified	_STDSRMWIEFR_					0	0	0		ENSG00000038295|ENST00000061240|TLL1	ENSG00000038295|ENST00000061240|TLL1	ENSG00000038295|ENST00000061240|TLL1	MSMS	HCT116MG_D190212_S1	1	476.5636291503906	3	476.562721	1426.66633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.852	1	21.852	21.352	22.352	0								0	0	0	0.92235	1	7708	7708		9.7643	2.2872	1				31905	993	20034	20146	30718	30718					-0.029932892565511793
STDSRMWIEFR	11	Unmodified	_STDSRMWIEFR_					0	0	0		ENSG00000038295|ENST00000061240|TLL1	ENSG00000038295|ENST00000061240|TLL1	ENSG00000038295|ENST00000061240|TLL1	MSMS	HCT116MG_D190212_S2	2	476.5637512207031	3	476.562721	1426.66633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.437	1	22.051	21.551	22.551	-0.3852								0	0	0	0.95273	1	7948	7948		2.2527	0.34635	1				31906	993	20034	20146	30719	30719					-0.029932892565511793
STDSSYQMY	9	Unmodified	_STDSSYQMY_					0	0	0		nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-MSMS	HCT116MG_D190212_S3	3	1081.415283203125	1	1081.41427	1080.40699	0.51526	0.00055721	0.19026	0.00020575	0.70552	0.00076296	1081.4145531915071	35.159	0.31099	34.86	34.699	35.01	-0.29841					8	5	2	0	0	0	0.010304	1	12964	12964		112.59	64.247	1	4588200			31907	5117	20035	20147	30720	30720					-0.12999659938327568
STDTGEAVY	9	Unmodified	_STDTGEAVY_					0	0	0		MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant;MKS1|p.F377Lfs*53|1|0.3|ENSG00000011143|chr17:58208139-58208139|A/-|frameshift_variant;nc|ENSG00000011143|Q9NXB0-2|MKS1;ENSG00000011143|ENST00000393119|MKS1	MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	942.40673828125	1	942.405083	941.397806	0.71048	0.00066956	0.43349	0.00040852	1.144	0.0010781	942.4055484192656	27.783	0.31182	27.595	27.465	27.777	-0.18847					7	5	2	0	0	0	0.019399	1	10056	10056		97.075	46.22	1	6537700			31908	887	20036	20148	30721	30721					-0.0752368523237692
STDTLYQITGP	11	Unmodified	_STDTLYQITGP_					0	0	0			REV__nc|ENSG00000169919|P08236-2|GUSB	REV__nc|ENSG00000169919|P08236-2|GUSB	MSMS	HCT116MG_D190212_S4	4	598.2937622070312	2	598.295693	1194.57683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.536	1	19.344	18.844	19.844	-0.19183								0	0	0	0.92983	1	6632	6632		16.149	1.7437	1		+		31909	13269	20037	20149	30722	30722					-0.012672206642946549
STDTRYLGSY	10	Unmodified	_STDTRYLGSY_					0	0	0		nc|ENSG00000162729|Q969P0-3|IGSF8;IGSF8|p.E456Gfs*84|1|0.37|ENSG00000162729|chr1:160092641-160092642|-/C|frameshift_variant;ENSG00000162729|ENST00000314485|IGSF8	nc|ENSG00000162729|Q969P0-3|IGSF8	nc|ENSG00000162729|Q969P0-3|IGSF8	MULTI-MSMS	HCT116MG_D190212_S3	3	581.7716064453125	2	581.772385	1161.53022	0.40755	0.0002371	-0.71259	-0.00041456	-0.30504	-0.00017746	581.7717622637192	34.383	0.26006	34.089	33.923	34.184	-0.29419					6	4	2	0	0	0	0.049927	1	12668	12668		87.258	59.629	1	3257700			31910	4547	20038	20150	30723	30723					-0.04408660495573713
STDTRYLGSY	10	Unmodified	_STDTRYLGSY_					0	0	0		nc|ENSG00000162729|Q969P0-3|IGSF8;IGSF8|p.E456Gfs*84|1|0.37|ENSG00000162729|chr1:160092641-160092642|-/C|frameshift_variant;ENSG00000162729|ENST00000314485|IGSF8	nc|ENSG00000162729|Q969P0-3|IGSF8	nc|ENSG00000162729|Q969P0-3|IGSF8	MULTI-MATCH	HCT116MG_D190212_S2	2		2	581.772385	1161.53022	0.45795	0.00026642	1.6015	0.00093173	2.0595	0.0011982	581.7730523134787	34.143	0.31138	33.968	33.76	34.072	-0.17511	-0.06207	0.0015583	NaN	87.258	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6513500			31911	4547	20038	20150							-0.04408660495573713
STDVDKTGASY	11	Unmodified	_STDVDKTGASY_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;EIF2A|p.Y349Hfs*7|1|0.06|ENSG00000144895|chr3:150572190-150572191|-/CATA|frameshift_variant	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MSMS	HCT116MG_D190212_S2	2	572.25341796875	2	572.26185	1142.50915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.99	1	21.605	21.105	22.105	-0.38503								0	0	0	0.91433	1	7768	7768		18.146	4.2403	1				31912	766	20039	20151	30724	30724					-0.056406705950848846
STDVDKTGASY	11	Unmodified	_STDVDKTGASY_					0	0	0		nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;EIF2A|p.I537Sfs*4|1|0.78|ENSG00000144895|chr3:150581723-150581723|A/-|frameshift_variant;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;EIF2A|p.Y349Hfs*7|1|0.06|ENSG00000144895|chr3:150572190-150572191|-/CATA|frameshift_variant	nc|ENSG00000144895|Q9BY44-2|EIF2A	nc|ENSG00000144895|Q9BY44-2|EIF2A	MSMS	HCT116MG_D190212_S2	2	572.2623901367188	2	572.26185	1142.50915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.123	1	21.738	21.238	22.238	-0.38503								0	0	0	0.61789	1	7821	7821		42.312	13.231	1				31913	766	20039	20151	30725	30725					-0.056406705950848846
STDVKGCSMY	10	Carbamidomethyl (C)	_STDVKGC(Carbamidomethyl (C))SMY_	STDVKGC(1)SMY		STDVKGC(42)SMY		0	1	0		ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD	ENSG00000129187|ENST00000438320|DCTD	ENSG00000129187|ENST00000438320|DCTD	MSMS	HCT116MG_D190212_S1	1	574.2418823242188	2	574.241549	1146.46855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.255	1	26.255	25.755	26.755	0								0	0	0	0.60706	1	9479	9479		42.312	24.166	1				31914	3022	20040	20152	30726	30726	15				-0.0988305151070108
STDVKGCSMY	10	Carbamidomethyl (C)	_STDVKGC(Carbamidomethyl (C))SMY_	STDVKGC(1)SMY		STDVKGC(65)SMY		0	1	0		ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD	ENSG00000129187|ENST00000438320|DCTD	ENSG00000129187|ENST00000438320|DCTD	MULTI-MSMS	HCT116MG_D190212_S2	2	574.2418212890625	2	574.241549	1146.46855	0.27484	0.00015782	0.27194	0.00015616	0.54677	0.00031398	574.2417660469189	26.6	0.25978	26.239	26.076	26.335	-0.36164					8	4	2	0	0	0	0.14359	1	9647	9647		65.474	40.074	1	17905000			31915	3022	20040	20152	30727	30727	15				-0.0988305151070108
STDVKGCSMY	10	Carbamidomethyl (C)	_STDVKGC(Carbamidomethyl (C))SMY_	STDVKGC(1)SMY		STDVKGC(65)SMY		0	1	0		ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD	ENSG00000129187|ENST00000438320|DCTD	ENSG00000129187|ENST00000438320|DCTD	MULTI-MSMS	HCT116MG_D190212_S3	3	574.2416381835938	2	574.241549	1146.46855	0.57948	0.00033276	-0.29198	-0.00016767	0.2875	0.00016509	574.2414031195783	26.389	0.20844	26.24	26.151	26.359	-0.14924					5	3	2	0	0	0	0.14359	1	9491	9491		65.474	38.59	1	2914600			31916	3022	20040	20152	30728	30728	15				-0.0988305151070108
STDVLSPWSP	10	Unmodified	_STDVLSPWSP_					0	0	0			REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF	REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF	MSMS	HCT116MG_D190212_S4	4	544.765869140625	2	544.766571	1087.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.052	1	35.666	35.166	36.166	-0.38558								0	0	0	0.84701	1	13178	13178		22.736	5.6234	1		+		31917	12443	20041	20153	30729	30729					-0.021668575189096373
STDVSQPPHVY	11	Unmodified	_STDVSQPPHVY_					0	0	0		ENST00000502862.1_1_5:61811283-61822085:+|nuORF;IPO11|p.S807Ffs*4|1|0.22|ENSG00000086200|chr5:62551288-62551289|TT/-|frameshift_variant;IPO11|p.S807Ffs*5|1|0.37|ENSG00000086200|chr5:62551287-62551288|-/T|frameshift_variant;IPO11|p.S807Lfs*22|2|0.29|ENSG00000086200|chr5:62551288-62551288|T/-|frameshift_variant;ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENST00000502862.1_1_5:61811283-61822085:+|nuORF	ENST00000502862.1_1_5:61811283-61822085:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	615.2941284179688	2	615.293485	1228.57242	0.39282	0.0002417	-0.14703	-9.0468E-05	0.24579	0.00015123	615.2936659818172	29.919	0.20822	29.919	29.789	29.997	0					6	3	2	0	0	0	0.22179	1	10979	10979		72.968	46.7	1	6896700			31918	1466	20042	20154	30730	30730					-0.032726850871767965
STDWMVIYVDT	11	Unmodified	_STDWMVIYVDT_					0	0	0			REV__ENST00000496647.5_1_3:69038048-69050774:-|nuORF	REV__ENST00000496647.5_1_3:69038048-69050774:-|nuORF	MSMS	HCT116MG_D190212_S3	3	665.3051147460938	2	665.305203	1328.59585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.383	1	15.468	14.968	15.968	0.08485								0	0	0	0.9465	1	5029	5029		8.1555	0	1		+		31919	12917	20043	20155	30731	30731					-0.055300073648822945
STDYFHWRWN	10	Unmodified	_STDYFHWRWN_					0	0	0			REV__nc|ENSG00000073578|P31040-3|SDHA	REV__nc|ENSG00000073578|P31040-3|SDHA	MSMS	HCT116MG_D190212_S3	3	706.313232421875	2	706.312543	1410.61053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.173	1	15.256	14.756	15.756	0.083271								0	0	0	0.96377	1	4944	4944		1.6526	0.32309	1		+		31920	17078	20044	20156	30732	30732					-0.07834754381860876
STEAALRY	8	Unmodified	_STEAALRY_					0	0	0			REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2	MSMS	HCT116MG_D190212_S3	3	455.7350769042969	2	455.735074	909.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.128	1	28.906	28.406	29.406	-0.22195								0	0	0	0.55681	1	10570	10570		39.957	5.8549	1		+		31921	13266	20045	20157	30733	30733					-0.0027537851628949284
STEAGALSYGN	11	Unmodified	_STEAGALSYGN_					0	0	0			REV__ENST00000463101.1_1_22:24583504-24584401:+|nuORF	REV__ENST00000463101.1_1_22:24583504-24584401:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	535.7601318359375	2	535.24346	1068.47237	0.29694	0.00015893	-3.6849	-0.0019723	-3.3879	-0.0018134	535.2416862000092	19.086	0.46945	18.717	18.314	18.784	-0.3695					15	8	3	0	0	0	0.36112	1	6492	6492		10.8	4.0763	1	5049900	+		31922	11054	20046	20158	30734	30734					-0.05912922420975519
STEALDNVLPS	11	Unmodified	_STEALDNVLPS_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-SECPEP	HCT116MG_D190212_S2	2	573.7908325195312	2	573.287868	1144.56118	0.38364	0.00021994	1.3191	0.00075622	1.7027	0.00097615	573.7904866434253	17.196	0.20863	16.847	16.769	16.978	-0.34933					5	3	2	0	0	0	0.35938	1	5877	5877		11.495	0	1	3468000			31923	1507	20047	20159	30735	30735					-0.00531507181312918
STECHQWYKKF	11	Unmodified	_STECHQWYKKF_					0	0	0		ENSG00000048545|ENST00000372958|GUCA1A	ENSG00000048545|ENST00000372958|GUCA1A	ENSG00000048545|ENST00000372958|GUCA1A	MULTI-MSMS	HCT116MG_D190212_S4	4	728.8372192382812	2	728.837536	1455.66052	0.8397	0.000612	-0.85251	-0.00062134	-0.012811	-9.337E-06	728.8369099244692	21.463	0.3119	21.244	21.01	21.322	-0.21832					10	5	2	0	0	0	0.74111	1	7377	7377		12.241	6.9438	1	3124300			31924	1034	20048	20160	30736	30736					-0.04908387768250577
STECQRSHYFG	11	Unmodified	_STECQRSHYFG_					0	0	0			REV__ENSG00000146678|ENST00000275525|IGFBP1	REV__ENSG00000146678|ENST00000275525|IGFBP1	MSMS	HCT116MG_D190212_S3	3	657.7816162109375	2	657.780219	1313.54588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.75	1	14.831	14.331	15.331	0.081669								0	0	0	0.94538	1	4773	4773		8.7454	0.58988	1		+		31925	12491	20049	20161	30737	30737					-0.0983469725017585
STECVLLPMM	10	Unmodified	_STECVLLPMM_					0	0	0		ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	MSMS	HCT116MG_D190212_S3	3	562.753662109375	2	562.263439	1122.51232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.21	1	21.228	20.728	21.728	0.018446								0	0	0	0.92272	1	7380	7380		10.824	0	1				31926	5914	20050	20162	30738	30738					-0.04403158337936475
STECWMTRPA	10	Unmodified	_STECWMTRPA_					0	0	0		ENST00000567019.1_1_15:43489502-43501706:-|nuORF;EPB42|p.L487Pfs*13|1|0.39|ENSG00000166947|chr15:43206488-43206489|-/G|frameshift_variant;EPB42|p.C670Sfs*10|1|0.04|ENSG00000166947|chr15:43197369-43197370|-/TATAAAGG|frameshift_variant;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	590.797119140625	2	591.257533	1180.50051	0.53912	0.00031876	-0.5142	-0.00030402	0.02492	1.4734E-05	591.2568927198064	19.042	0.31184	19.111	18.927	19.239	0.069159					12	5	3	0	0	0	0.81435	1	6461	6461		10.824	0.75	1	2582400			31927	4892	20051	20163	30739	30739					-0.08251639036893721
STEEARFLTY	10	Unmodified	_STEEARFLTY_					0	0	0		nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	MULTI-SECPEP	HCT116MG_D190212_S2	2	608.3854370117188	2	608.79586	1215.57717	0.078167	4.7588E-05	-0.033116	-2.0161E-05	0.045051	2.7427E-05	608.7958790136689	43.265	0.25776	43.192	43.045	43.303	-0.073376					6	4	2	0	0	0	0.29442	1	16394	16394		6.2058	5.0124	1	7310400			31928	2244	20052	20164	30740	30740					-0.02199800944413255
STEECVRVP	9	Unmodified	_STEECVRVP_					0	0	0			REV__ENSG00000154124|ENST00000284274|OTULIN	REV__ENSG00000154124|ENST00000284274|OTULIN	MSMS	HCT116MG_D190212_S4	4	510.2444763183594	2	510.244949	1018.47534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.584	1	37.2	36.7	37.7	-0.3839								0	0	0	0.76669	1	13798	13798		12.532	3.9383	1		+		31929	12670	20053	20165	30741	30741					-0.03315370567827358
STEEEEESE	9	Unmodified	_STEEEEESE_					0	0	0			REV__ENST00000578145.1_1_18:10770070-10773554:-|nuORF	REV__ENST00000578145.1_1_18:10770070-10773554:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	534.3118896484375	2	534.696206	1067.37786	0.57527	0.00030759	-3.308	-0.0017688	-2.7327	-0.0014612	534.6939062702517	25.573	0.20799	25.455	25.348	25.556	-0.11831					7	3	3	0	0	0	0.26505	1	9116	9116		1.4819	1.1749	1	6207300	+		31930	12688	20054	20166	30742	30742					-0.15313525753640533
STEEERKLLDA	11	Unmodified	_STEEERKLLDA_					0	0	0		PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant	PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant	PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	430.887939453125	3	430.88938	1289.64631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.275	1	16.111	15.611	16.611	-0.16364								0	0	0	0.96121	1	5314	5314		0.45452	0.046251	1				31931	5887	20055	20167	30743	30743					0.013072382844939057
STEEILTV	8	Unmodified	_STEEILTV_					0	0	0		HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant;ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	HECTD4|p.A4187Pfs*44|1|0.07|ENSG00000173064|chr12:112163201-112163201|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	446.2376708984375	2	446.237116	890.459678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.004	1	22.004	21.504	22.504	0.00074577								0	0	0	0.8837	1	7697	7697		12.532	3.1841	1				31932	5269	20056	20168	30744	30744					0.01006666186754046
STEEKTSPP	9	Unmodified	_STEEKTSPP_					0	0	0			REV__NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant	REV__NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	488.2349853515625	2	488.235104	974.455655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.643	1	21.661	21.161	22.161	0.018446								0	0	0	0.71969	1	7552	7552		18.135	2.2878	1		+		31933	12097	20057	20169	30745	30745					-0.03259423306951703
STEERFYKQ	9	Unmodified	_STEERFYKQ_					0	0	0		ENSG00000151304|ENST00000339397|SRFBP1	ENSG00000151304|ENST00000339397|SRFBP1	ENSG00000151304|ENST00000339397|SRFBP1	MULTI-SECPEP	HCT116MG_D190212_S1	1	594.5738525390625	2	594.288202	1186.56185	-0.22731	-0.00013509	0.078038	4.6377E-05	-0.14927	-8.871E-05	594.2882015894045	38.258	0.52052	38.258	37.968	38.488	0					14	9	2	0	0	0	0.25004	1	14291	14291		6.7232	4.2247	1	5314200			31934	4106	20058	20170	30746	30746					-0.023966677416410676
STEERKVWAN	10	Unmodified	_STEERKVWAN_					0	0	0		ENSG00000198554|ENST00000360586|WDHD1;nc|ENSG00000198554|O75717-2|WDHD1;ENST00000475379.1_1_14:55408210-55411247:-|nuORF	ENSG00000198554|ENST00000360586|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	MULTI-MSMS	HCT116MG_D190212_S4	4	610.3076782226562	2	610.306926	1218.5993	0.37614	0.00022956	0.069304	4.2297E-05	0.44545	0.00027186	610.3069991601317	16.782	0.95602	16.616	16.221	17.177	-0.16664					28	18	2	0	0	0	0.86339	2	5478	5443;5478		6.7232	2.7788	1	938540			31935	6240	20059	20171	30747;30748	30748					-0.0012557647598896438
STEEVQSIPQ	10	Unmodified	_STEEVQSIPQ_					0	0	0			REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	559.2722778320312	2	559.272218	1116.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.879	1	22.86	22.36	23.36	-0.018869								0	0	0	0.83705	1	8050	8050		24.021	4.7636	1		+		31936	9872	20060	20172	30749	30749					-0.023720802154230114
STEEVQSIPQ	10	Unmodified	_STEEVQSIPQ_					0	0	0			REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	559.2600708007812	2	559.272218	1116.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.955	1	22.718	22.218	23.218	-0.23758								0	0	0	0.83705	1	8013	8013		24.021	4.7636	1		+		31937	9872	20060	20172	30750	30750					-0.023720802154230114
STEGHQDPQ	9	Unmodified	_STEGHQDPQ_					0	0	0			REV__AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|3|1|sense	REV__AluSp_dup12528|chr4:108625371-108625684:-|1.1205789574276814|0.0295741133308953|5.24|467.0|3|1|sense	MSMS	HCT116MG_D190212_S3	3	499.7120666503906	2	499.712328	997.410102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.27	1	15.353	14.853	15.853	0.083271								0	0	0	0.76694	1	4983	4983		11.64	0	1		+		31938	9926	20061	20173	30751	30751					-0.08870648769322997
STEGNKHLYNA	11	Unmodified	_STEGNKHLYNA_					0	0	0			REV__MBD4|p.E314Kfs*4|1|0.74|ENSG00000129071|chr3:129436705-129436705|T/-|frameshift_variant	REV__MBD4|p.E314Kfs*4|1|0.74|ENSG00000129071|chr3:129436705-129436705|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	617.2242431640625	2	617.296559	1232.57856	0.42137	0.00026011	0.54034	0.00033355	0.96171	0.00059366	617.2968833211726	24.691	0.67691	24.608	24.341	25.018	-0.083694					16	12	2	0	0	0	0.73844	1	8681	8681		7.609	1.8771	1	7896200	+		31939	11884	20062	20174	30752	30752					-0.02842166855657524
STEHSIPTPP	10	Unmodified	_STEHSIPTPP_					0	0	0		KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant;nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant	KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	533.2645263671875	2	533.264196	1064.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.805	1	27.463	26.963	27.963	-0.34201								0	0	0	0.81484	1	10116	10116		26.884	1.4843	1				31940	3469	20063	20175	30753	30753					-0.015837416616705013
STEHSSVSEY	10	Unmodified	_STEHSSVSEY_					0	0	0		ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8	ENSG00000151491|ENST00000281172|EPS8	ENSG00000151491|ENST00000281172|EPS8	MSMS	HCT116MG_D190212_S2	2	562.7980346679688	2	563.238375	1124.4622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.08	1	21.695	21.195	22.195	-0.38503								0	0	0	0.69311	1	7804	7804		37.974	17.52	1				31941	4115	20064	20176	30754	30754					-0.09505530146225283
STEKRRREQEN	11	Unmodified	_STEKRRREQEN_					0	0	0		NCOA1|p.E742Nfs*12|1|0.21|ENSG00000084676|chr2:24707688-24707688|A/-|frameshift_variant;nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	NCOA1|p.E742Nfs*12|1|0.21|ENSG00000084676|chr2:24707688-24707688|A/-|frameshift_variant	NCOA1|p.E742Nfs*12|1|0.21|ENSG00000084676|chr2:24707688-24707688|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	716.863037109375	2	716.866202	1431.71785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.58	1	25.459	24.959	25.959	-0.12116								0	0	0	0.95113	1	9139	9139		5.7319	0.83484	1				31942	1449	20065	20177	30755	30755					0.01926170761726098
STELDLHEKES	11	Unmodified	_STELDLHEKES_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MSMS	HCT116MG_D190212_S3	3	644.3076782226562	2	644.306789	1286.59903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.086	1	16.171	15.671	16.671	0.085424								0	0	0	0.95273	1	5312	5312		4.897	0.95262	1		+		31943	11986	20066	20178	30756	30756					-0.0328104098653057
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	517.25146484375	2	517.251089	1032.48762	0.52082	0.00026939	0.046047	2.3818E-05	0.56686	0.00029321	517.2510155670794	35.707	0.41573	35.707	35.578	35.993	0					20	7	4	0	0	0	0.0034935	1	13295	13295		166.45	103.88	1	118170000			31944	3696	20067	20179	30757	30757					-0.0273201083314234
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	517.2513427734375	2	517.251089	1032.48762	0.52314	0.0002706	0.052818	2.732E-05	0.57596	0.00029792	517.2510724397221	35.805	0.61789	35.663	35.335	35.953	-0.14245					31	11	4	0	0	0	0.0038833	1	13353	13353		152.41	106.39	1	533600000			31945	3696	20067	20179	30758	30758					-0.0273201083314234
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1033.49560546875	1	1033.4949	1032.48762	0.75504	0.00078033	0.66833	0.00069072	1.4234	0.0014711	1033.4950237789021	35.811	0.30817	35.669	35.489	35.797	-0.14245					9	5	2	0	0	0	5.7085E-05	1	13358	13358		206.75	148.07	1	76307000			31946	3696	20067	20179	30759	30759					-0.0273201083314234
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	517.251220703125	2	517.251089	1032.48762	0.1001	5.1777E-05	0.014473	7.486E-06	0.11457	5.9263E-05	517.2510396283234	35.952	0.35899	35.652	35.527	35.886	-0.30042					11	6	2	0	0	0	0.20784	1	13269	13269		40.449	11.962	1	24876000			31947	3696	20067	20179	30760	30760					-0.0273201083314234
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1033.4949	1032.48762	0.97308	0.0010057	0.61852	0.00063924	1.5916	0.0016449	1033.4966441589904	35.727	0.20756	35.727	35.63	35.837	0	0.028969	-4.5369E-05	NaN	206.75	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8581800			31948	3696	20067	20179							-0.0273201083314234
STELNTRP	8	Unmodified	_STELNTRP_					0	0	0			REV__ENSG00000185115|ENST00000332303|NSMCE3	REV__ENSG00000185115|ENST00000332303|NSMCE3	MULTI-MSMS	HCT116MG_D190212_S3	3	459.7403869628906	2	459.237981	916.461409	0.32848	0.00015085	-0.51932	-0.00023849	-0.19084	-8.7642E-05	459.2377274256555	22.974	0.97742	22.955	22.231	23.208	-0.018869					41	18	3	0	0	0	0.11121	1	8140	8140		92.491	9.9621	1	15373000	+		31949	13829	20068	20180	30761	30761					-0.00016280004615509824
STELQAKREPT	11	Unmodified	_STELQAKREPT_					0	0	0			REV__WDPCP|p.E541K|1|0.24|ENSG00000143951|chr2:63381909-63381909|C/T|missense_variant	REV__WDPCP|p.E541K|1|0.24|ENSG00000143951|chr2:63381909-63381909|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	630.333740234375	2	630.333141	1258.65173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.568	1	24.299	23.799	24.799	-0.26881								0	0	0	0.94012	1	8663	8663		11.495	2.1116	1		+		31950	18051	20069	20181	30762	30762					0.032749618669413394
STELYRDP	8	Unmodified	_STELYRDP_					0	0	0			REV__DOCK10|p.I366Rfs*14|1|0.5|ENSG00000135905|chr2:224874269-224874270|TA/-|frameshift_variant	REV__DOCK10|p.I366Rfs*14|1|0.5|ENSG00000135905|chr2:224874269-224874270|TA/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	490.7381591796875	2	490.737814	979.461075	0.43781	0.00021485	0.49612	0.00024346	0.93393	0.00045832	490.7380543174536	29.756	0.36165	29.455	29.289	29.65	-0.30095					8	6	2	0	0	0	0.30703	1	10936	10936		12.532	0.89125	1	9787600	+		31951	10399	20070	20182	30763	30763					-0.02947699724472841
STENTHPRSNE	11	Unmodified	_STENTHPRSNE_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MSMS	HCT116MG_D190212_S3	3	636.2876586914062	2	636.28418	1270.55381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.423	1	22.407	21.907	22.907	-0.015427								0	0	0	0.94755	1	7866	7866		7.609	0	1		+		31952	13343	20071	20183	30764	30764					-0.07064846729053897
STENWNRP	8	Unmodified	_STENWNRP_					0	0	0		tr|U7SR00|U7SR00_FUSNUIsoprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01734PE=3SV=1	tr|U7SR00|U7SR00_FUSNUIsoprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01734PE=3SV=1	tr|U7SR00|U7SR00_FUSNUIsoprenyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01734PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	502.25665283203125	2	502.23323	1002.45191	0.44105	0.00022151	-0.10023	-5.0338E-05	0.34082	0.00017117	502.23315698144665	20.903	0.26016	20.52	20.39	20.651	-0.38288					6	4	2	0	0	0	0.2988	1	7341	7341		15.847	0	1	3648700			31953	18397	20072	20184	30765	30765					-0.04922048290143266
STEPFVHTCFA	11	Unmodified	_STEPFVHTCFA_					0	0	0			REV__TBX4|p.P371Lfs*8|2|0.28|ENSG00000121075|chr17:61482984-61482984|C/-|frameshift_variant	REV__TBX4|p.P371Lfs*8|2|0.28|ENSG00000121075|chr17:61482984-61482984|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	619.778076171875	2	619.779156	1237.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.717	1	41.415	40.915	41.915	-0.30257								0	0	0	0.91433	1	15519	15519		18.146	5.1039	1		+		31954	11707	20073	20185	30766	30766					-0.06551125987971318
STEPHRPGP	9	Unmodified	_STEPHRPGP_					0	0	0			REV__KRBA1|p.Q367Nfs*25|1|0.31|ENSG00000133619|chr7:149724818-149724818|C/-|frameshift_variant	REV__KRBA1|p.Q367Nfs*25|1|0.31|ENSG00000133619|chr7:149724818-149724818|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	489.2440490722656	2	489.243598	976.472643	-0.0030453	-1.4899E-06	-0.041495	-2.0301E-05	-0.04454	-2.1791E-05	489.24357124828254	21.047	0.2074	20.837	20.708	20.915	-0.20959					5	3	2	0	0	0	0.47829	1	7273	7273		18.135	3.2967	1	1564000	+		31955	16935	20074	20186	30767	30767					-0.01653457910481393
STEPMDQRQ	9	Unmodified	_STEPMDQRQ_					0	0	0			REV__DPPA2|p.M137T|1|0.38|ENSG00000163530|chr3:109308280-109308280|A/G|missense_variant	REV__DPPA2|p.M137T|1|0.38|ENSG00000163530|chr3:109308280-109308280|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	546.2537841796875	2	546.242938	1090.47132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.599	1	32.316	31.816	32.816	-0.28363								0	0	0	0.71946	1	11954	11954		18.146	2.2992	1		+		31956	10407	20075	20187	30768	30768					-0.07029460061539794
STEPNPRPV	9	Unmodified	_STEPNPRPV_					0	0	0			REV__ENST00000526269.2_1_11:128561691-128562836:-|nuORF	REV__ENST00000526269.2_1_11:128561691-128562836:-|nuORF	MSMS	HCT116MG_D190212_S4	4	498.7582702636719	2	498.759081	995.503609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.381	1	30.024	29.524	30.524	-0.3571								0	0	0	0.76694	1	11011	11011		11.64	0.81637	1		+		31957	16275	20076	20188	30769	30769					0.005676954037653559
STEPSSVHVY	10	Unmodified	_STEPSSVHVY_					0	0	0		ENST00000479637.1_1_7:154664335-154668756:+|nuORF	ENST00000479637.1_1_7:154664335-154668756:+|nuORF	ENST00000479637.1_1_7:154664335-154668756:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2611694335938	2	553.261653	1104.50875	0.41425	0.00022919	0.028198	1.5601E-05	0.44244	0.00024479	553.2616381918679	30.615	0.51658	30.25	30.152	30.668	-0.36416					30	20	2	0	0	0	0.65652	1	11157	11157		24.021	2.4836	1	6548100			31958	8229	20077	20189	30770	30770					-0.03932045524265959
STEPSSVHVY	10	Unmodified	_STEPSSVHVY_					0	0	0		ENST00000479637.1_1_7:154664335-154668756:+|nuORF	ENST00000479637.1_1_7:154664335-154668756:+|nuORF	ENST00000479637.1_1_7:154664335-154668756:+|nuORF	MSMS	HCT116MG_D190212_S4	4	553.2623901367188	2	553.261653	1104.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.236	1	29.879	29.379	30.379	-0.3571								0	0	0	0.83705	1	10953	10953		24.021	1.2843	1				31959	8229	20077	20189	30771	30771					-0.03932045524265959
STEPTLDRHDV	11	Unmodified	_STEPTLDRHDV_					0	0	0			REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MSMS	HCT116MG_D190212_S1	1	635.3076171875	2	635.307123	1268.59969	0.68028	0.00043219	-0.033423	-2.1234E-05	0.64686	0.00041096	635.307083281827	32.613	0.36449	32.613	32.378	32.742	0					15	6	4	0	0	0	0.73536	1	12026	12026		8.7454	0	1	28104000	+		31960	11170	20078	20190	30772	30772					-0.02386201546846678
STEQIPILY	9	Unmodified	_STEQIPILY_					0	0	0		ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	MULTI-MSMS	HCT116MG_D190212_S2	2	1063.568359375	1	1063.567	1062.55973	0.5321	0.00056592	0.31708	0.00033724	0.84918	0.00090316	1063.5676694629278	54.194	0.20624	54.004	53.893	54.099	-0.1894					6	3	2	0	0	0	0.0051486	1	20874	20874		136.33	25.046	1	23123000			31961	3142	20079	20191	30773	30773					0.03094903520582193
STEQIPILY	9	Unmodified	_STEQIPILY_					0	0	0		ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1063.567	1062.55973	0.53912	0.00057339	0.19846	0.00021107	0.73758	0.00078446	1063.5673507825759	54.408	0.15685	54.112	53.981	54.138	-0.29587	0.053874	-5.6775E-05	NaN	136.33	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1319700			31962	3142	20079	20191							0.03094903520582193
STEQKGMIEA	10	Unmodified	_STEQKGMIEA_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MSMS	HCT116MG_D190212_S3	3	547.26123046875	2	547.263339	1092.51212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.574	1	22.555	22.055	23.055	-0.018869								0	0	0	0.84761	1	7927	7927		22.658	3.4011	1				31963	6160	20080	20192	30774	30774					-0.030431187419253547
STERAPYGP	9	Unmodified	_STERAPYGP_					0	0	0		MAGEA11|p.I94Sfs*13|1|0.39|ENSG00000185247|chrX:149715762-149715762|C/-|frameshift_variant;nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11	MAGEA11|p.I94Sfs*13|1|0.39|ENSG00000185247|chrX:149715762-149715762|C/-|frameshift_variant	MAGEA11|p.I94Sfs*13|1|0.39|ENSG00000185247|chrX:149715762-149715762|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	488.742431640625	2	489.237981	976.461409	0.10266	5.0224E-05	-0.14525	-7.1059E-05	-0.042588	-2.0835E-05	489.23790123518506	19.494	0.93678	19.554	18.865	19.802	0.05983					24	17	2	0	0	0	0.25723	1	6440	6440		12.532	10.687	1	3424000			31964	5812	20081	20193	30775	30775					-0.027762800046275515
STERELLE	8	Unmodified	_STERELLE_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	HCT116MG_D190212_S3	3	489.2560729980469	2	488.750921	975.48729	0.17702	8.6519E-05	0.6002	0.00029335	0.77722	0.00037987	488.7509148527872	27.23	0.36444	27.061	26.912	27.276	-0.16933					9	6	2	0	0	0	0.74206	1	9745	9745		18.135	4.6271	1	1995700			31965	5486	20082	20194	30776	30776					-0.0014343055298695617
STERETRQEY	10	Unmodified	_STERETRQEY_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	HCT116MG_D190212_S2	2	649.8025512695312	2	649.802205	1297.58986	0.64674	0.00042026	-0.21924	-0.00014246	0.42751	0.00027779	649.8020524928415	17.405	0.26144	17.056	16.925	17.187	-0.34933					9	4	3	0	0	0	0.017881	1	5945	5945		125.18	96.687	1	19337000			31966	1024	20083	20195	30777	30777					-0.04703389552196313
STERETRQEY	10	Unmodified	_STERETRQEY_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MSMS	HCT116MG_D190212_S2	2	649.8023071289062	2	649.802205	1297.58986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.598	1	17.244	16.744	17.744	-0.35425								0	0	0	0.94107	1	5999	5999		6.7232	0	1				31967	1024	20083	20195	30778	30778					-0.04703389552196313
STERETRQEY	10	Unmodified	_STERETRQEY_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	649.802205	1297.58986	0.78097	0.00050748	0.18749	0.00012183	0.96846	0.00062931	649.8021688799842	16.863	0.15648	16.863	16.785	16.942	0	-0.096392	0.00047314	NaN	125.18	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3574000			31968	1024	20083	20195							-0.04703389552196313
STESDSSAAP	10	Unmodified	_STESDSSAAP_					0	0	0			REV__RTF1|p.K236Efs*37|1|0.13|ENSG00000137815|chr15:41464812-41464813|AA/-|frameshift_variant	REV__RTF1|p.K236Efs*37|1|0.13|ENSG00000137815|chr15:41464812-41464813|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	476.1987609863281	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.253	1	26.941	26.441	27.441	-0.3114								0	0	0	0.90475	1	9747	9747		14.838	0	1		+		31969	12193	20084	20196	30779	30779					-0.09429177100378183
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	459.1722106933594	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7892	1	2.7892	2.2892	3.2892	0								0	0	0	0.8837	1	840	840		0	0	1		+		31970	10308	20085	20197	30780	30780					-0.1317255488304454
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	459.17205810546875	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8428	1	4.8428	4.3428	5.3428	0								0	0	0	0.8837	1	1459	1459		0	0	1		+		31971	10308	20085	20197	30781	30781					-0.1317255488304454
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	459.1717834472656	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9272	1	3.8381	3.3381	4.3381	-0.089082								0	0	0	0.8837	1	1247	1247		0	0	1		+		31972	10308	20085	20197	30782	30782					-0.1317255488304454
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	459.17205810546875	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.024	1	12.726	12.226	13.226	-0.29749								0	0	0	0.8837	1	4263	4263		0	0	1		+		31973	10308	20085	20197	30783	30783					-0.1317255488304454
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	459.1725769042969	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.284	1	64.168	63.668	64.668	-0.11585								0	0	0	0.8837	1	24886	24886		0	0	1		+		31974	10308	20085	20197	30784	30784					-0.1317255488304454
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	459.172119140625	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6613	1	1.7222	1.2222	2.2222	0.060905								0	0	0	0.8837	1	515	515		0	0	1		+		31975	10308	20085	20197	30785	30785					-0.1317255488304454
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	459.171875	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.7335	1	3.7699	3.2699	4.2699	0.036387								0	0	0	0.8837	1	1131	1131		0	0	1		+		31976	10308	20085	20197	30786	30786					-0.1317255488304454
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	459.17236328125	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8626	1	8.8832	8.3832	9.3832	0.020599								0	0	0	0.8837	1	2678	2678		0	0	1		+		31977	10308	20085	20197	30787	30787					-0.1317255488304454
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	459.2503967285156	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.808	1	24.725	24.225	25.225	-0.083694								0	0	0	0.8837	1	8828	8828		5.7604	0	1		+		31978	10308	20085	20197	30788	30788					-0.1317255488304454
STESDTDY	8	Unmodified	_STESDTDY_					0	0	0			REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	REV__CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	459.2506103515625	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.035	1	24.756	24.256	25.256	-0.27958								0	0	0	0.8837	1	8852	8852		5.7604	0	1		+		31979	10308	20085	20197	30789	30789					-0.1317255488304454
STESSVAVY	9	Unmodified	_STESSVAVY_					0	0	0		ENST00000411676.6_1_18:55274615-55283204:-|nuORF;ENSG00000134440|ENST00000256854|NARS1	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	942.4415283203125	1	942.441468	941.434192	0.81708	0.00077005	-0.13144	-0.00012387	0.68564	0.00064618	942.4412165603081	32.49	0.36524	32.49	32.274	32.639	0					15	6	3	0	0	0	0.011506	1	11981	11981		109.63	56.054	1	41817000			31980	3286	20086	20198	30790	30790					-0.03886808335664682
STESSVAVY	9	Unmodified	_STESSVAVY_					0	0	0		ENST00000411676.6_1_18:55274615-55283204:-|nuORF;ENSG00000134440|ENST00000256854|NARS1	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	942.4420166015625	1	942.441468	941.434192	0.69626	0.00065619	0.15612	0.00014714	0.85239	0.00080332	942.4413473817361	32.74	0.57085	32.528	32.221	32.792	-0.21135					22	10	3	0	0	0	0.011506	1	12096	12096		109.63	56.054	1	98263000			31981	3286	20086	20198	30791	30791					-0.03886808335664682
STESSVAVY	9	Unmodified	_STESSVAVY_					0	0	0		ENST00000411676.6_1_18:55274615-55283204:-|nuORF;ENSG00000134440|ENST00000256854|NARS1	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	942.442138671875	1	942.441468	941.434192	0.85468	0.00080549	-0.0019852	-1.8709E-06	0.8527	0.00080362	942.4411227546738	32.867	0.34976	32.582	32.352	32.702	-0.2851					13	6	3	0	0	0	0.026974	1	12045	12045		89.427	35.851	1	19560000			31982	3286	20086	20198	30792	30792					-0.03886808335664682
STETELTEAL	10	Unmodified	_STETELTEAL_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	HCT116MG_D190212_S4	4	547.26806640625	2	547.266601	1092.51865	0.50183	0.00027463	1.4463	0.0007915	1.9481	0.0010661	547.2673299554253	28.681	0.25938	28.34	28.159	28.418	-0.34059					6	4	2	0	0	0	0.56527	1	10343	10343		30.637	3.7529	1	2175200			31983	2765	20087	20199	30793	30793					-0.023909023095711746
STETPHSGVK	10	Unmodified	_STETPHSGVK_					0	0	0		ENST00000409434.5_1_2:99938658-99944097:-|nuORF	ENST00000409434.5_1_2:99938658-99944097:-|nuORF	ENST00000409434.5_1_2:99938658-99944097:-|nuORF	MSMS	HCT116MG_D190212_S3	3	521.7625732421875	2	521.76182	1041.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.767	1	23.706	23.206	24.206	-0.061449								0	0	0	0.91279	1	8408	8408		13.042	1.4022	1				31984	7728	20088	20200	30794	30794					-0.01000625804408628
STETPHSGVKY	11	Unmodified	_STETPHSGVKY_					0	0	0		ENST00000409434.5_1_2:99938658-99944097:-|nuORF	ENST00000409434.5_1_2:99938658-99944097:-|nuORF	ENST00000409434.5_1_2:99938658-99944097:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	602.7583618164062	2	603.293485	1204.57242	0.65861	0.00039733	-0.92823	-0.00055999	-0.26962	-0.00016266	603.2926114918612	21.164	0.15601	20.781	20.703	20.859	-0.38288					4	2	2	0	0	0	0.30869	1	7439	7439		47.732	27.317	1	6040000			31985	7728	20089	20201	30795	30795					-0.021686850871674324
STETRGPAP	9	Unmodified	_STETRGPAP_					0	0	0		ENST00000531526.5_1_11:45944386-45945084:+|nuORF	ENST00000531526.5_1_11:45944386-45945084:+|nuORF	ENST00000531526.5_1_11:45944386-45945084:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	457.7056579589844	2	458.230156	914.445759	0.10623	4.8679E-05	0.73857	0.00033843	0.8448	0.00038711	458.2301733433459	20.429	0.16051	20.05	19.969	20.13	-0.37949					4	2	2	0	0	0	0.19936	1	7158	7158		27.629	10.516	1	2919600			31986	8622	20090	20202	30796	30796					-0.0148856652166387
STEVTVGPEG	10	Unmodified	_STEVTVGPEG_					0	0	0		nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	MSMS	HCT116MG_D190212_S3	3	488.23504638671875	2	488.235104	974.455655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.978	1	21.013	20.513	21.513	0.034473								0	0	0	0.90475	1	7286	7286		14.838	0	1				31987	3193	20091	20203	30797	30797					-0.03259423306928966
STEVVRAQEE	10	Unmodified	_STEVVRAQEE_					0	0	0		nc|ENSG00000115459|Q96FG2-3|ELMOD3;nc|ENSG00000115459|Q96FG2-5|ELMOD3;nc|ENSG00000115459|Q96FG2-2|ELMOD3;ENSG00000115459|ENST00000409013|ELMOD3;nc|ENSG00000115459|Q96FG2-6|ELMOD3;ENST00000490508.5_1_2:85582731-85618082:+|nuORF	nc|ENSG00000115459|Q96FG2-3|ELMOD3	nc|ENSG00000115459|Q96FG2-3|ELMOD3	MSMS	HCT116MG_D190212_S4	4	574.2828979492188	2	574.283117	1146.55168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.337	1	19.151	18.651	19.651	-0.18674								0	0	0	0.92917	1	6552	6552		9.3831	0.63772	1				31988	2469	20092	20204	30798	30798					-0.015732754668533744
STFAESIDK	9	Unmodified	_STFAESIDK_					0	0	0			REV__BCL2L13|p.E73D|1|0.25|ENSG00000099968|chr22:17683311-17683311|A/C|missense_variant	REV__BCL2L13|p.E73D|1|0.25|ENSG00000099968|chr22:17683311-17683311|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	499.245361328125	2	499.245472	996.476391	0.43715	0.00021825	-0.21344	-0.00010656	0.22371	0.00011169	499.24534218620977	44.629	0.21631	44.256	44.07	44.286	-0.37325					6	4	2	0	0	0	0.16144	1	16456	16456		46.021	2.1627	1	13428000	+		31989	10036	20093	20205	30799	30799					-0.02198832927285821
STFDHPELV	9	Unmodified	_STFDHPELV_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MSMS	HCT116MG_D190212_S2	2	522.7542724609375	2	522.753464	1043.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.227	1	41.159	40.659	41.659	-0.068199								0	0	0	0.76669	1	15571	15571		12.532	3.9383	1				31990	4831	20094	20206	30800	30800					-0.027631266904108998
STFDHPELVKL	11	Unmodified	_STFDHPELVKL_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	HCT116MG_D190212_S1	1	643.3429565429688	2	643.342978	1284.6714	0.56199	0.00036155	-0.097941	-6.301E-05	0.46405	0.00029854	643.3428204019298	44.277	0.26852	44.277	44.088	44.357	0					15	4	4	0	0	0	3.8173E-05	1	16751	16751		202.97	119.54	1	84566000			31991	4831	20095	20207	30801	30801					0.04045337877687416
STFDHPELVKL	11	Unmodified	_STFDHPELVKL_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	HCT116MG_D190212_S1	1	429.2307434082031	3	429.231077	1284.6714	-0.12885	-5.5306E-05	-0.34711	-0.00014899	-0.47596	-0.0002043	429.2308009142788	44.249	0.26852	44.249	44.088	44.357	0					12	4	4	0	0	0	0.34973	1	16755	16755		59.496	44.658	1	44183000			31992	4831	20095	20207	30802	30802					0.04045337877687416
STFDHPELVKL	11	Unmodified	_STFDHPELVKL_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	HCT116MG_D190212_S2	2	643.34326171875	2	643.342978	1284.6714	0.4217	0.0002713	-0.22914	-0.00014741	0.19256	0.00012388	643.342679467128	44.279	0.41548	44.2	43.967	44.382	-0.07864					17	7	4	0	0	0	7.1373E-07	1	16798	16798		210.93	124.6	1	176680000			31993	4831	20095	20207	30803	30803					0.04045337877687416
STFDHPELVKL	11	Unmodified	_STFDHPELVKL_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	HCT116MG_D190212_S2	2	429.2307434082031	3	429.231077	1284.6714	-0.13192	-5.6624E-05	-0.28564	-0.00012261	-0.41756	-0.00017923	429.230870583295	44.269	0.31303	44.191	44.019	44.332	-0.078369					17	5	4	0	0	0	0.033511	1	16808	16808		108.77	66.701	1	128550000			31994	4831	20095	20207	30804	30804					0.04045337877687416
STFKAPASKP	10	Unmodified	_STFKAPASKP_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;LMTK2-BAIAP2L1|1|fusion	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MSMS	HCT116MG_D190212_S4	4	517.2586059570312	2	517.287474	1032.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.229	1	28.884	28.384	29.384	-0.34535								0	0	0	0.91638	1	10546	10546		12.241	2.8575	1				31995	827	20096	20208	30805	30805					0.04541742960282136
STFKAPASKP	10	Unmodified	_STFKAPASKP_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;LMTK2-BAIAP2L1|1|fusion	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MSMS	HCT116MG_D190212_S4	4	517.2938232421875	2	517.287474	1032.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.413	1	31.043	30.543	31.543	-0.37026								0	0	0	0.91279	1	11400	11400		13.042	1.4022	1				31996	827	20096	20208	30806	30806					0.04541742960282136
STFKNGST	8	Unmodified	_STFKNGST_					0	0	0			REV__ENST00000460338.5_1_13:103443606-103451020:-|nuORF	REV__ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	841.406005859375	1	841.405023	840.397747	0.97219	0.000818	-0.09495	-7.9891E-05	0.87724	0.00073811	841.4051965779607	28.181	0.31436	28.181	28.06	28.375	0					7	5	2	0	0	0	0.51345	1	10284	10284		39.95	5.548	1	6062800	+		31997	12074	20097	20209	30807	30807					-0.028836404417006634
STFKPKAEVPS	11	Unmodified	_STFKPKAEVPS_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	MULTI-SECPEP	HCT116MG_D190212_S3	3	596.2931518554688	2	595.824421	1189.63429	0.6372	0.00037966	-0.39143	-0.00023322	0.24578	0.00014644	595.8240882056991	38.161	0.36277	37.859	37.729	38.092	-0.30137					8	6	2	0	0	0	0.34807	1	14153	14153		22.736	2.2827	1	6064000			31998	6628	20098	20210	30808	30808					0.04705666331938119
STFLVIAKLCS	11	Unmodified	_STFLVIAKLCS_					0	0	0			REV__ENSG00000175745|ENST00000327111|NR2F1	REV__ENSG00000175745|ENST00000327111|NR2F1	MSMS	HCT116MG_D190212_S4	4	591.7960205078125	2	591.333567	1180.65258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.524	1	33.14	32.64	33.64	-0.38385								0	0	0	0.95196	1	12207	12207		5.2969	0	1		+		31999	13528	20099	20211	30809	30809					0.0694808498230941
STFNPAGA	8	Unmodified	_STFNPAGA_					0	0	0		sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1;sp|P16782|RIR1_HCMVARibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=RIR1PE=3SV=1	sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	764.3571166992188	1	764.357345	763.350068	0.85302	0.00065201	-0.071254	-5.4464E-05	0.78176	0.00059755	764.3572054977232	19.773	1.2379	19.579	18.758	19.996	-0.19368					31	23	2	0	0	0	0.44484	1	6538	6538		46.021	1.6139	1	5750500			32000	18213	20100	20212	30810	30810					-0.04107294641914905
STFQEWIQWCI	11	Unmodified	_STFQEWIQWCI_					0	0	0			REV__ZNF233|p.N171Ifs*6|1|0.29|ENSG00000159915|chr19:44273167-44273167|A/-|frameshift_variant	REV__ZNF233|p.N171Ifs*6|1|0.29|ENSG00000159915|chr19:44273167-44273167|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	720.83544921875	2	720.834462	1439.65437	0.77741	0.00056038	-0.87817	-0.00063301	-0.10076	-7.2631E-05	720.8340931328261	29.171	0.41534	28.83	28.522	28.938	-0.34059					11	7	2	0	0	0	0.72792	1	10545	10545		11.495	0	1	3100300	+		32001	12814	20101	20213	30811	30811					-0.047869059997310615
STFQGSQNLP	10	Unmodified	_STFQGSQNLP_					0	0	0			REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	MULTI-MSMS	HCT116MG_D190212_S3	3	539.7798461914062	2	539.76182	1077.50909	0.47942	0.00025877	0.3888	0.00020986	0.86822	0.00046863	539.7619329112467	24.574	0.57244	24.49	24.237	24.809	-0.083694					16	10	2	0	0	0	0.75066	1	8633	8633		16.149	5.9985	1	3007600	+		32002	13570	20102	20214	30812	30812					-0.026566258044113056
STFRKKPKYHK	11	Unmodified	_STFRKKPKYHK_					0	0	0			REV__nc|ENSG00000186063|Q96BJ3-2|AIDA	REV__nc|ENSG00000186063|Q96BJ3-2|AIDA	MSMS	HCT116MG_D190212_S4	4	710.417724609375	2	710.414603	1418.81465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.894	1	43.52	43.02	44.02	-0.37403								0	0	0	0.95686	1	16151	16151		2.7352	1.4057	1		+		32003	13872	20103	20215	30813	30813					0.12199809779463067
STFSDLFDEEE	11	Unmodified	_STFSDLFDEEE_					0	0	0			REV__nc|ENSG00000108423|Q9UJT1-3|TUBD1	REV__nc|ENSG00000108423|Q9UJT1-3|TUBD1	MSMS	HCT116MG_D190212_S3	3	659.7669067382812	2	659.769705	1317.52486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.31	1	16.396	15.896	16.896	0.085424								0	0	0	0.95196	1	5403	5403		5.2969	0.39987	1		+		32004	11345	20104	20216	30814	30814					-0.12120428868706767
STFSNGHQHQP	11	Unmodified	_STFSNGHQHQP_					0	0	0			REV__nc|ENSG00000013619|Q13495-4|MAMLD1	REV__nc|ENSG00000013619|Q13495-4|MAMLD1	MSMS	HCT116MG_D190212_S4	4	620.276123046875	2	620.2787	1238.54285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.206	1	21.978	21.478	22.478	-0.22777								0	0	0	0.9465	1	7711	7711		8.1555	0.54658	1		+		32005	10536	20105	20217	30815	30815					-0.06688204312672497
STFWPNEY	8	Unmodified	_STFWPNEY_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;ENST00000429595.1_1_6:128556737-128643312:-|nuORF;PTPRU|p.P168Qfs*9|1|0.2|ENSG00000060656|chr1:29259283-29259283|C/-|frameshift_variant;PTPRK|p.Q311*|1|0.1|ENSG00000152894|chr6:128184660-128184663|GTTG/-|frameshift_variant;PTPRK-RSPO3|1|fusion;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;PTPRU|p.G852Afs*35|1|0.26|ENSG00000060656|chr1:29303898-29303898|G/-|frameshift_variant;PTPRK-RSPO3|2|fusion;PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant;PTPRK|p.N914Tfs*7|1|0.12|ENSG00000152894|chr6:127996924-127996924|T/-|frameshift_variant;PTPRK|p.D908Ifs*13|1|0.39|ENSG00000152894|chr6:127996944-127996944|T/-|frameshift_variant;PTPRK|p.Y1034Tfs*61|1|0.4|ENSG00000152894|chr6:127985870-127985870|C/-|frameshift_variant;PTPRK|p.L1219*|2|0.16|ENSG00000152894|chr6:127981168-127981168|A/-|frameshift_variant;nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF	nc|ENSG00000060656|Q92729-3|PTPRU;PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant	PTPRK|p.N914Kfs*10|1|0.12|ENSG00000152894|chr6:127996923-127996924|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	522.22705078125	2	522.227082	1042.43961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.597	1	22.597	22.097	23.097	0								0	0	0	0.8837	1	8008	8008		15.847	4.2069	1				32006	9793;1110	20106	20218	30816	30816					-0.0799108475318917
STFYYITWLM	10	Unmodified	_STFYYITWLM_					0	0	0			REV__tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	REV__tr|U7SJ75|U7SJ75_FUSNUMultidrugexportproteinMepAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02134PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	662.79150390625	2	662.81775	1323.62095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.557	1	27.368	26.868	27.868	-0.18847								0	0	0	0.90892	1	9936	9936		13.906	0.29118	1		+		32007	17688	20107	20219	30817	30817					-0.027919077716660468
STGGNGGK	8	Unmodified	_STGGNGGK_					0	0	0		CON__Q9DCV7	CON__Q9DCV7	CON__Q9DCV7	MULTI-MSMS	HCT116MG_D190212_S4	4	678.3208618164062	1	677.321293	676.314017	0.58567	0.00039669	-0.68631	-0.00046485	-0.10064	-6.8167E-05	677.3246757344695	22.709	0.20855	22.471	22.341	22.55	-0.23758					7	3	3	0	0	0	0.86564	1	7931	7931		2.5775	0	1	1864800		+	32008	586	20108	20220	30818	30818					-0.037087518187604473
STGLRAEPAP	10	Unmodified	_STGLRAEPAP_					0	0	0		ENST00000438320.6_2_4:183836720-183838521:-|nuORF;ENST00000500813.6_1_4:183836716-183838521:-|nuORF;ENST00000510370.5_2_4:183837662-183838521:-|nuORF;ENST00000508994.1_3_4:183837609-183838521:-|nuORF;ENST00000509757.5_1_4:183837834-183838521:-|nuORF	ENST00000438320.6_2_4:183836720-183838521:-|nuORF	ENST00000438320.6_2_4:183836720-183838521:-|nuORF	MSMS	HCT116MG_D190212_S2	2	499.7666015625	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.285	1	16.935	16.435	17.435	-0.34933								0	0	0	0.78574	1	5873	5873		30.637	0	1				32009	7897	20109	20221	30819	30819					0.020399819207909786
STGLRAEPAPD	11	Unmodified	_STGLRAEPAPD_					0	0	0		ENST00000438320.6_2_4:183836720-183838521:-|nuORF;ENST00000500813.6_1_4:183836716-183838521:-|nuORF;ENST00000510370.5_2_4:183837662-183838521:-|nuORF;ENST00000508994.1_3_4:183837609-183838521:-|nuORF;ENST00000509757.5_1_4:183837834-183838521:-|nuORF	ENST00000438320.6_2_4:183836720-183838521:-|nuORF	ENST00000438320.6_2_4:183836720-183838521:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	556.9484252929688	2	557.280377	1112.5462	0.58655	0.00032687	1.8041	0.0010054	2.3907	0.0013323	557.781715370168	30.737	0.26011	30.737	30.555	30.815	0					13	4	4	0	0	0	0.3506	1	11294	11294		11.495	0	1	9040100			32010	7897	20110	20222	30820	30820					-0.005569542586727039
STGLSLGGALA	11	Unmodified	_STGLSLGGALA_					0	0	0		ENST00000495460.1_1_13:25875911-25891836:+|nuORF;nc|ENSG00000139496|Q9BVL2-2|NUP58;ENST00000466694.5_1_13:25875911-25912925:+|nuORF;nc|ENSG00000139496|Q9BVL2-3|NUP58;ENSG00000139496|ENST00000381736|NUP58	ENST00000495460.1_1_13:25875911-25891836:+|nuORF	ENST00000495460.1_1_13:25875911-25891836:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	474.1683349609375	2	473.763832	945.513111	0.13983	6.6246E-05	-0.13345	-6.3225E-05	0.0063755	3.0205E-06	473.76369756736943	18.688	0.15636	18.688	18.558	18.714	0					4	2	2	0	0	0	0.33676	1	6388	6388		29.082	2.1979	1	2515800			32011	3629	20111	20223	30821	30821					0.03817463689267697
STGMMSCKMY	10	Oxidation (M)	_STGMMSCKM(Oxidation (M))Y_		STGM(0.016)M(0.016)SCKM(0.968)Y		STGM(-18)M(-18)SCKM(18)Y	0	0	1		nc|ENSG00000181885|O95471-2|CLDN7;ENSG00000181885|ENST00000360325|CLDN7	nc|ENSG00000181885|O95471-2|CLDN7	nc|ENSG00000181885|O95471-2|CLDN7	MULTI-MSMS	HCT116MG_D190212_S2	2	578.22265625	2	577.721081	1153.42761	0.37371	0.0002159	-0.79459	-0.00045905	-0.42088	-0.00024315	577.7207423166149	20.477	0.3717	20.098	19.917	20.289	-0.37949					13	6	3	0	0	0	0.40515	1	7178	7178		41.84	19.103	3	16610000			32012	5646	20112	20224	30822	30822		123			-0.14296852146185302
STGMMSCKMY	10	Oxidation (M)	_STGMMSCKM(Oxidation (M))Y_					0	0	1		nc|ENSG00000181885|O95471-2|CLDN7;ENSG00000181885|ENST00000360325|CLDN7	nc|ENSG00000181885|O95471-2|CLDN7	nc|ENSG00000181885|O95471-2|CLDN7	MULTI-MATCH	HCT116MG_D190212_S3	3		2	577.721081	1153.42761	0.3736	0.00021584	-0.28461	-0.00016443	0.088986	5.1409E-05	577.721010346286	20.133	0.2083	20.181	20.051	20.259	0.048107	0.026965	0.00053357	NaN	41.84	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2332500			32013	5646	20112	20224				123			-0.14296852146185302
STGRMPGVH	9	Unmodified	_STGRMPGVH_					0	0	0			REV__ENSG00000016391|ENST00000315251|CHDH	REV__ENSG00000016391|ENST00000315251|CHDH	MSMS	HCT116MG_D190212_S1	1	471.2355651855469	2	471.234719	940.454884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.576	1	25.576	25.076	26.076	0								0	0	0	0.71969	1	9206	9206		18.135	5.6034	1		+		32014	10543	20113	20225	30823	30823					-0.01772496436979054
STGSGGTG	8	Unmodified	_STGSGGTG_					0	0	0			REV__UBQLN4|p.A385Pfs*7|1|0.03|ENSG00000160803|chr1:156042886-156042887|GC/-|frameshift_variant	REV__UBQLN4|p.A385Pfs*7|1|0.03|ENSG00000160803|chr1:156042886-156042887|GC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	624.62939453125	1	623.26311	622.255833	0.40173	0.00025039	3.0559	0.0019046	3.4576	0.002155	623.2603342635238	35.4	0.14457	35.258	35.19	35.335	-0.14245					4	2	2	0	0	0	0.8672	1	13200	13200		2.3027	0	1	15517000	+		32015	12845	20114	20226	30824	30824					-0.07040433464032958
STGTLQKPPN	10	Unmodified	_STGTLQKPPN_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MSMS	HCT116MG_D190212_S1	1	521.8043212890625	2	521.780013	1041.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.567	1	25.567	25.067	26.067	0								0	0	0	0.8981	1	9202	9202		16.149	4.5088	1				32016	5489	20115	20227	30825	30825					0.026362510922808724
STGVKGDYAV	10	Unmodified	_STGVKGDYAV_					0	0	0		ENSG00000157077|ENST00000287727|ZFYVE9;nc|ENSG00000157077|O95405-2|ZFYVE9	ENSG00000157077|ENST00000287727|ZFYVE9	ENSG00000157077|ENST00000287727|ZFYVE9	MULTI-MSMS	HCT116MG_D190212_S2	2	499.2696533203125	2	498.753464	995.492375	0.48606	0.00024242	-0.59946	-0.00029898	-0.1134	-5.6557E-05	498.75325396984164	25.849	0.31153	25.48	25.343	25.654	-0.36914					8	5	2	0	0	0	0.77749	1	9357	9357		13.906	0	1	17816000			32017	4313	20116	20228	30826	30826					-0.0055512669038080276
STGVPQPTP	9	Unmodified	_STGVPQPTP_					0	0	0			REV__WDR3|p.R405G|1|0.29|ENSG00000065183|chr1:117943511-117943511|A/G|missense_variant	REV__WDR3|p.R405G|1|0.29|ENSG00000065183|chr1:117943511-117943511|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	442.2286376953125	2	442.229625	882.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.032	1	22.794	22.294	23.294	-0.23758								0	0	0	0.76849	1	8043	8043		6.2058	0.47393	1		+		32018	18052	20117	20229	30827	30827					-0.0012278089055826058
STHCGPWPQCL	11	Unmodified	_STHCGPWPQCL_					0	0	0			REV__ENST00000490622.5_1_19:35988327-35991112:-|nuORF	REV__ENST00000490622.5_1_19:35988327-35991112:-|nuORF	MSMS	HCT116MG_D190212_S1	1	614.7660522460938	2	614.765526	1227.5165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.655	1	15.655	15.155	16.155	0								0	0	0	0.95636	1	5216	5216		2.9952	0	1		+		32019	16032	20118	20230	30828	30828					-0.08815932800007431
STHNDWLLFMT	11	Unmodified	_STHNDWLLFMT_					0	0	0			REV__ENST00000477735.1_1_3:178865975-178916577:+|nuORF	REV__ENST00000477735.1_1_3:178865975-178916577:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	683.3209838867188	2	682.818812	1363.62307	0.18878	0.0001289	0.34668	0.00023672	0.53547	0.00036563	682.8191022897677	16.84	0.96791	16.673	16.261	17.229	-0.16664					28	18	2	0	0	0	0.36574	1	5711	5711		2.9952	0.26005	1	1948200	+		32020	15925	20119	20231	30829	30829					-0.04419479033867901
STHVLVRGP	9	Unmodified	_STHVLVRGP_					0	0	0			REV__ENSG00000054938|ENST00000376332|CHRDL2	REV__ENSG00000054938|ENST00000376332|CHRDL2	MSMS	HCT116MG_D190212_S4	4	483.28021240234375	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.193	1	34.807	34.307	35.307	-0.38606								0	0	0	0.7689	1	12880	12880		4.756	0.42677	1		+		32021	10639	20120	20232	30830	30830					0.06172295882947765
STIENKTRN	9	Unmodified	_STIENKTRN_					0	0	0		ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	MSMS	HCT116MG_D190212_S2	2	531.7827758789062	2	531.780544	1061.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.654	1	47.521	47.021	48.021	-0.13281								0	0	0	0.30227	1	18183	18183		39.957	7.1716	1				32022	7662	20121	20233	30831	30831					0.018224654611913138
STIIKIYTF	9	Unmodified	_STIIKIYTF_					0	0	0			REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	MSMS	HCT116MG_D190212_S4	4	543.31396484375	2	543.3157	1084.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.28	1	37.897	37.397	38.397	-0.38283								0	0	0	0.69648	1	14023	14023		19.257	6.2145	1		+		32023	17154	20122	20234	30832	30832					0.07792370796937576
STIIRIYLY	9	Unmodified	_STIIRIYLY_					0	0	0			REV__ENST00000253144.13_1_19:54082569-54082719:+|nuORF	REV__ENST00000253144.13_1_19:54082569-54082719:+|nuORF	MSMS	HCT116MG_D190212_S4	4	571.3326416015625	2	571.334424	1140.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.391	1	39.01	38.51	39.51	-0.38055								0	0	0	0.76781	1	14471	14471		8.5933	1.304	1		+		32024	14593	20123	20235	30833	30833					0.08959462062557577
STIKIKRKVM	10	Unmodified	_STIKIKRKVM_					0	0	0			REV__ENST00000457422.6_1_17:42755944-42756196:-|nuORF	REV__ENST00000457422.6_1_17:42755944-42756196:-|nuORF	MSMS	HCT116MG_D190212_S3	3	602.3821411132812	2	602.383926	1202.7533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.634	1	15.72	15.22	16.22	0.085423								0	0	0	0.96377	1	5130	5130		1.6526	0	1		+		32025	15759	20124	20236	30834	30834					0.1600316175581611
STIPTNVVL	9	Unmodified	_STIPTNVVL_					0	0	0			REV__ENSG00000091656|ENST00000651372|ZFHX4	REV__ENSG00000091656|ENST00000651372|ZFHX4	MSMS	HCT116MG_D190212_S4	4	472.2764892578125	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.655	1	40.277	39.777	40.777	-0.37828								0	0	0	0.71969	1	14923	14923		18.135	5.6034	1		+		32026	11003	20125	20237	30835	30835					0.06502938211713172
STKEELLQ	8	Unmodified	_STKEELLQ_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.L1842Yfs*10|1|0.19|ENSG00000163625|chr4:84755300-84755300|A/-|frameshift_variant;WDFY3|p.N1207Tfs*16|1|0.37|ENSG00000163625|chr4:84789775-84789775|T/-|frameshift_variant	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MSMS	HCT116MG_D190212_S3	3	474.25457763671875	2	474.25584	946.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.18	1	28.958	28.458	29.458	-0.22195								0	0	0	0.8837	1	10591	10591		8.5933	0	1				32027	4614	20126	20238	30836	30836					0.021737574523854164
STKIKAEDP	9	Unmodified	_STKIKAEDP_					0	0	0		nc|ENSG00000028277|P09086-3|POU2F2;nc|ENSG00000028277|P09086-2|POU2F2;nc|ENSG00000028277|P09086|POU2F2;nc|ENSG00000028277|P09086-5|POU2F2;ENST00000530982.7_1_19:42603618-42636563:-|nuORF;nc|ENSG00000028277|P09086-4|POU2F2	nc|ENSG00000028277|P09086-3|POU2F2	nc|ENSG00000028277|P09086-3|POU2F2	MULTI-MSMS	HCT116MG_D190212_S2	2	494.7568359375	2	494.769114	987.523675	0.33849	0.00016747	0.0071432	3.5342E-06	0.34563	0.00017101	494.7690739099409	17.458	0.26144	17.108	16.925	17.187	-0.34933					7	4	2	0	0	0	0.57626	1	5871	5871		12.532	0.89125	1	8554300			32028	9370	20127	20239	30837	30837					0.029414463436978622
STKKKRWKWPK	11	Unmodified	_STKKKRWKWPK_					0	0	0			REV__ENST00000545919.1_1_6:143999315-144033340:+|nuORF	REV__ENST00000545919.1_1_6:143999315-144033340:+|nuORF	MSMS	HCT116MG_D190212_S2	2	736.9492797851562	2	736.94607	1471.87759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.147	1	24.771	24.271	25.271	-0.37521								0	0	0	0.9598	1	9043	9043		1.1933	0	1		+		32029	11460	20128	20240	30838	30838					0.16052375567483068
STKPRPPPGP	10	Unmodified	_STKPRPPPGP_					0	0	0		nc|ENSG00000164430|Q8N884-2|CGAS;ENSG00000164430|ENST00000370315|CGAS	nc|ENSG00000164430|Q8N884-2|CGAS	nc|ENSG00000164430|Q8N884-2|CGAS	MULTI-SECPEP	HCT116MG_D190212_S4	4	516.77001953125	2	517.293091	1032.57163	0.20747	0.00010732	1.3726	0.00071005	1.5801	0.00081737	517.2941836227162	31.316	0.30926	30.945	30.714	31.023	-0.37026					7	5	2	0	0	0	0.30991	1	11294	11294		1.6526	0	1	1728900			32030	4697	20129	20241	30839	30839					0.05664565054416926
STKRRRGTPP	10	Unmodified	_STKRRRGTPP_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MSMS	HCT116MG_D190212_S3	3	578.3388061523438	2	578.338895	1154.66324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.826	1	27.638	27.138	28.138	-0.18847								0	0	0	0.96377	1	10045	10045		1.6526	0	1		+		32031	13043	20130	20242	30840	30840					0.09209248471597675
STKSRTKLVL	10	Unmodified	_STKSRTKLVL_					0	0	0		ENST00000492643.5_1_1:151339689-151341653:-|nuORF;ENST00000455839.5_1_1:151339298-151341653:-|nuORF;ENST00000474352.5_1_1:151338696-151341653:-|nuORF;nc|ENSG00000143416|Q13228-2|SELENBP1;ENSG00000143416|ENST00000368868|SELENBP1;nc|ENSG00000143416|Q13228-4|SELENBP1	ENST00000492643.5_1_1:151339689-151341653:-|nuORF	ENST00000492643.5_1_1:151339689-151341653:-|nuORF	MSMS	HCT116MG_D190212_S1	1	377.86090087890625	3	378.239796	1131.69756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.099	1	33.099	32.599	33.599	0								0	0	0	0.91961	1	12237	12237		11.518	4.0408	1				32032	3810	20131	20243	30841	30841					0.1369765183983418
STKVDVPESY	10	Unmodified	_STKVDVPESY_					0	0	0			REV__ENSG00000198846|ENST00000361421|TOX	REV__ENSG00000198846|ENST00000361421|TOX	MULTI-SECPEP	HCT116MG_D190212_S2	2	563.3038330078125	2	562.777136	1123.53972	0.70557	0.00039708	1.3274	0.00074706	2.033	0.0011441	562.7781566285269	26.101	0.25996	25.74	25.61	25.87	-0.36164					8	4	3	0	0	0	0.29734	1	9445	9445		9.3831	0	1	6788500	+		32033	10172	20132	20244	30842	30842					-0.017108922100533164
STLAFQVA	8	Unmodified	_STLAFQVA_					0	0	0		nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;nc|ENSG00000120334|Q8N0S6-2|CENPL	nc|ENSG00000120334|Q8N0S6-3|CENPL	nc|ENSG00000120334|Q8N0S6-3|CENPL	MULTI-MSMS	HCT116MG_D190212_S3	3	836.4513549804688	1	836.451245	835.443968	0.69766	0.00058356	0.58398	0.00048847	1.2816	0.001072	836.4517685475237	54.233	0.52237	53.936	53.667	54.189	-0.29712					17	9	2	0	0	0	0.73076	1	20521	20521		19.439	3.5918	1	5386600			32034	8391	20133	20245	30843	30843					0.01966424460374583
STLAFQVA	8	Unmodified	_STLAFQVA_					0	0	0		nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;nc|ENSG00000120334|Q8N0S6-2|CENPL	nc|ENSG00000120334|Q8N0S6-3|CENPL	nc|ENSG00000120334|Q8N0S6-3|CENPL	MULTI-MSMS	HCT116MG_D190212_S4	4	836.451904296875	1	836.451245	835.443968	0.81701	0.00068339	0.089438	7.481E-05	0.90645	0.0007582	836.4511532256366	54.214	0.62531	53.889	53.617	54.243	-0.32513					19	11	2	0	0	0	0.69862	1	20251	20251		23.148	3.7094	1	8997900			32035	8391	20133	20245	30844	30844					0.01966424460374583
STLDGVLEV	9	Unmodified	_STLDGVLEV_					0	0	0		nc|ENSG00000152683|Q6NXT4-4|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	MULTI-MSMS	HCT116MG_D190212_S2	2	932.49462890625	1	932.493504	931.486227	0.91878	0.00085676	-0.035252	-3.2872E-05	0.88353	0.00082389	932.4934638640036	52.612	0.3107	52.425	52.244	52.555	-0.18725					7	5	2	0	0	0	0.035914	1	20217	20217		81.613	7.1903	1	20409000			32036	4161	20134	20246	30845	30845					0.01774355078100598
STLEVKKDP	9	Unmodified	_STLEVKKDP_					0	0	0			REV__ENST00000502634.1_1_5:20304521-20305535:-|nuORF	REV__ENST00000502634.1_1_5:20304521-20305535:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	509.28656005859375	2	508.784764	1015.55498	0.24647	0.0001254	0.25265	0.00012855	0.49912	0.00025395	509.2863494527153	36.652	0.20511	36.267	36.126	36.331	-0.38486					5	3	2	0	0	0	0.57626	1	13428	13428		12.532	4.6214	1	2438500	+		32037	16121	20135	20247	30846	30846					0.047820193778079556
STLGCRLP	8	Unmodified	_STLGCRLP_					0	0	0		ENST00000583254.1_1_17:8137927-8138020:-|nuORF	ENST00000583254.1_1_17:8137927-8138020:-|nuORF	ENST00000583254.1_1_17:8137927-8138020:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	423.7285461425781	2	423.728738	845.442923	-0.041374	-1.7531E-05	-0.05179	-2.1945E-05	-0.093164	-3.9476E-05	423.72867545536303	32.203	0.26004	31.925	31.786	32.046	-0.27841					6	4	2	0	0	0	0.66848	1	11817	11817		26.341	4.5946	1	5115900			32038	8966	20136	20248	30847	30847					0.014018868198149903
STLHDSIGGP	10	Unmodified	_STLHDSIGGP_					0	0	0		nc|ENSG00000107954|O76050-2|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.763916015625	2	492.243264	982.471974	0.17915	8.8186E-05	0.9736	0.00047925	1.1527	0.00056743	492.24399479325393	30.818	0.31134	30.551	30.404	30.716	-0.26704					9	5	2	0	0	0	0.30027	1	11295	11295		7.2892	0	1	5901000			32039	9418	20137	20249	30848	30848					-0.019962973501833403
STLHTEEFAER	11	Unmodified	_STLHTEEFAER_					0	0	0			REV__PNPO|p.S176Cfs*4|1|0.17|ENSG00000108439|chr17:47945969-47945970|TC/-|frameshift_variant	REV__PNPO|p.S176Cfs*4|1|0.17|ENSG00000108439|chr17:47945969-47945970|TC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	659.8816528320312	2	660.314948	1318.61534	0.65947	0.00043546	0.1969	0.00013002	0.85637	0.00056547	660.3151437199023	40.237	0.51838	39.859	39.564	40.082	-0.37828					24	14	2	0	0	0	0.74191	1	14775	14775		5.7319	0	1	5554200	+		32040	11346	20138	20250	30849	30849					-0.031219150297602027
STLITVLNI	9	Unmodified	_STLITVLNI_					0	0	0		ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	MULTI-MSMS	HCT116MG_D190212_S1	1	487.29888916015625	2	487.30005	972.585547	0.20019	9.7553E-05	-1.3085	-0.00063764	-1.1083	-0.00054009	487.2986946192799	47.569	1.5035	47.569	46.751	48.254	0					40	29	3	0	0	0	0.65706	1	18083	18083		7.9102	0.62092	1	98325000			32041	2476	20139	20251	30850	30850					0.09815797762848888
STLKINKDP	9	Unmodified	_STLKINKDP_					0	0	0		CEP78|p.L68P|1|0.12|ENSG00000148019|chr9:78236553-78236553|T/C|missense_variant	CEP78|p.L68P|1|0.12|ENSG00000148019|chr9:78236553-78236553|T/C|missense_variant	CEP78|p.L68P|1|0.12|ENSG00000148019|chr9:78236553-78236553|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	509.26409912109375	2	508.292756	1014.57096	0.13584	6.9048E-05	0.10668	5.4225E-05	0.24252	0.00012327	508.2927955594858	26.716	0.3636	26.415	26.234	26.597	-0.30087					15	6	3	0	0	0	0.47829	1	9499	9499		18.135	0	1	22327000			32042	412	20140	20252	30851	30851					0.06425725614712974
STLKNSLFPS	10	Unmodified	_STLKNSLFPS_					0	0	0		ENSG00000169427|ENST00000520439|KCNK9	ENSG00000169427|ENST00000520439|KCNK9	ENSG00000169427|ENST00000520439|KCNK9	MSMS	HCT116MG_D190212_S3	3	547.2981567382812	2	547.298039	1092.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.76	1	31.489	30.989	31.989	-0.27028								0	0	0	0.9356	1	11615	11615		13.042	5.1323	1				32043	5073	20141	20253	30852	30852					0.038937082691290925
STLLGLPSGV	10	Unmodified	_STLLGLPSGV_					0	0	0		ENST00000462417.1_1_3:77366333-77366669:-|nuORF	ENST00000462417.1_1_3:77366333-77366669:-|nuORF	ENST00000462417.1_1_3:77366333-77366669:-|nuORF	MSMS	HCT116MG_D190212_S3	3	472.2762145996094	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.29	1	27.12	26.62	27.62	-0.16933								0	0	0	0.88261	1	9828	9828		18.146	1.0335	1				32044	8066	20142	20254	30853	30853					0.06502938211713172
STLLGLPSGV	10	Unmodified	_STLLGLPSGV_					0	0	0		ENST00000462417.1_1_3:77366333-77366669:-|nuORF	ENST00000462417.1_1_3:77366333-77366669:-|nuORF	ENST00000462417.1_1_3:77366333-77366669:-|nuORF	MSMS	HCT116MG_D190212_S4	4	472.2757568359375	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.458	1	27.137	26.637	27.637	-0.32157								0	0	0	0.83705	1	9830	9830		24.021	1.2843	1				32045	8066	20142	20254	30854	30854					0.06502938211713172
STLLSFSTAI	10	Unmodified	_STLLSFSTAI_					0	0	0		ENSG00000135953|ENST00000258436|MFSD9	ENSG00000135953|ENST00000258436|MFSD9	ENSG00000135953|ENST00000258436|MFSD9	MULTI-SECPEP	HCT116MG_D190212_S2	2	520.3325805664062	2	520.28714	1038.55973	0.42842	0.0002229	-0.54891	-0.00028559	-0.12049	-6.2688E-05	520.2867390737405	39.02	0.2062	38.935	38.857	39.063	-0.084618					5	3	2	0	0	0	0.27023	1	14652	14652		19.257	2.3147	1	10919000			32046	3386	20143	20255	30855	30855					0.0419890352056882
STLPHGSSY	9	Unmodified	_STLPHGSSY_					0	0	0		ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;ITSN2|p.A1240Pfs*15|1|0.05|ENSG00000198399|chr2:24217995-24217996|-/AAGGG|frameshift_variant;ITSN2|p.F1478Qfs*12|1|0.3|ENSG00000198399|chr2:24209858-24209859|AA/-|frameshift_variant;ITSN2|p.A1583Pfs*86|1|0.25|ENSG00000198399|chr2:24205230-24205230|T/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant	ITSN2|p.T790Nfs*11|1|0.43|ENSG00000198399|chr2:24261729-24261730|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	474.72467041015625	2	474.724707	947.43486	0.30436	0.00014449	0.20813	9.8804E-05	0.51249	0.00024329	474.724613701458	32.233	0.46708	31.858	31.59	32.057	-0.37529					15	8	2	0	0	0	0.2682	1	11719	11719		34.102	0	1	8610800			32047	6229	20144	20256	30856	30856					-0.040959688959446794
STLPRIKEQ	9	Unmodified	_STLPRIKEQ_					0	0	0			REV__ENSG00000262655|ENST00000576479|SPON1	REV__ENSG00000262655|ENST00000576479|SPON1	MSMS	HCT116MG_D190212_S4	4	536.3121948242188	2	536.31148	1070.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.04	1	23.782	23.282	24.282	-0.25816								0	0	0	0.76902	1	8449	8449		4.3292	0	1		+		32048	14426	20145	20257	30857	30857					0.07592816880332975
STLPSHTPQ	9	Unmodified	_STLPSHTPQ_					0	0	0			REV__ENST00000473501.1_1_3:196755203-196755518:-|nuORF	REV__ENST00000473501.1_1_3:196755203-196755518:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	486.2544250488281	2	484.245806	966.47706	0.30141	0.00014596	0.20246	9.8042E-05	0.50387	0.000244	484.2458331073124	25.901	0.67767	25.773	25.442	26.12	-0.12795					30	12	5	0	0	0	0.51829	1	9247	9247		15.847	3.3156	1	93917000	+		32049	15890	20146	20258	30858	30858					-0.007519934875631407
STLQLGPSG	9	Unmodified	_STLQLGPSG_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MSMS	HCT116MG_D190212_S4	4	430.2289733886719	2	430.229625	858.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.22	1	24.94	24.44	25.44	-0.27958								0	0	0	0.71946	1	8926	8926		18.146	0	1				32050	9594	20147	20259	30859	30859					0.009812191094397349
STLQLGPSG	9	Unmodified	_STLQLGPSG_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MSMS	HCT116MG_D190212_S4	4	430.2278747558594	2	430.229625	858.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.38	1	27.069	26.569	27.569	-0.3114								0	0	0	0.76849	1	9799	9799		6.2058	0	1				32051	9594	20147	20259	30860	30860					0.009812191094397349
STLRPSNPP	9	Unmodified	_STLRPSNPP_					0	0	0			REV__ENST00000603175.1_1_2:74729816-74730080:+|nuORF	REV__ENST00000603175.1_1_2:74729816-74730080:+|nuORF	MSMS	HCT116MG_D190212_S3	3	484.7610778808594	2	484.761623	967.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.671	1	22.652	22.152	23.152	-0.018869								0	0	0	0.35515	1	7966	7966		36.127	1.7253	1		+		32052	16760	20148	20260	30861	30861					0.02363999266378869
STLRSGLKAV	10	Unmodified	_STLRSGLKAV_					0	0	0		DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1	DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant	DAAM1|p.E1001Dfs*18|1|0.08|ENSG00000100592|chr14:59367574-59367575|-/TGGTTTTAAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	517.3059692382812	2	516.314023	1030.61349	0.288	0.0001487	0.36073	0.00018625	0.64872	0.00033495	516.3140646158414	53.686	0.73016	53.387	53.091	53.821	-0.29946					27	13	3	0	0	0	0.88076	1	20320	20320		3.2813	0.39209	1	5879400			32053	635	20149	20261	30862	30862					0.09941120742928433
STLSAPALAA	10	Unmodified	_STLSAPALAA_					0	0	0			REV__SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant	REV__SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	451.25341796875	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.184	1	32.184	31.684	32.684	0								0	0	0	0.92917	1	11868	11868		9.3831	1.473	1		+		32054	13176	20150	20262	30863	30863					0.037420786605480316
STLSCKEKAD	10	Unmodified	_STLSCKEKAD_					0	0	0		SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant;ENSG00000106304|ENST00000682466|SPAM1;nc|ENSG00000106304|P38567-2|SPAM1	SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant	SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	541.2615966796875	2	541.263339	1080.51212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.548	1	32.169	31.669	32.669	-0.37924								0	0	0	0.89062	1	11859	11859		17.113	0	1				32055	2069	20151	20263	30864	30864					-0.024911187419320413
STLSLILFML	10	Unmodified	_STLSLILFML_					0	0	0			REV__tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	REV__tr|U7SES3|U7SES3_FUSNUSH3bdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02340PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	569.332763671875	2	569.333036	1136.65152	0.43715	0.00024889	-0.45723	-0.00026031	-0.020075	-1.143E-05	569.3325337196849	50.175	1.4477	49.816	49.019	50.466	-0.35878					55	30	3	0	0	0	0.81435	1	18374	18374		10.824	0.75	1	5739100	+		32056	17660	20152	20264	30865	30865					0.08865870613408333
STLSSSPWSAQ	11	Unmodified	_STLSSSPWSAQ_					0	0	0		nc|ENSG00000185133|Q15735-2|INPP5J;ENSG00000185133|ENST00000331075|INPP5J	nc|ENSG00000185133|Q15735-2|INPP5J	nc|ENSG00000185133|Q15735-2|INPP5J	MSMS	HCT116MG_D190212_S4	4	575.774658203125	2	575.772385	1149.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.762	1	20.552	20.052	21.052	-0.20959								0	0	0	0.93295	1	7127	7127		15.248	0.41021	1				32057	5807	20153	20265	30866	30866					-0.03856660495557662
STLVILAG	8	Unmodified	_STLVILAG_					0	0	0			REV__tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	REV__tr|U7T4H8|U7T4H8_FUSNUSpermidine/putrescinetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00343PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	387.4546813964844	2	387.242004	772.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.801	1	24.718	24.218	25.218	-0.083694								0	0	0	0.8837	1	8825	8825		5.7604	0	1		+		32058	17968	20154	20266	30867	30867					0.0741189898282073
STLWNLLTP	9	Unmodified	_STLWNLLTP_					0	0	0		ENST00000361112.6_1_17:33849919-33864693:-|nuORF	ENST00000361112.6_1_17:33849919-33864693:-|nuORF	ENST00000361112.6_1_17:33849919-33864693:-|nuORF	MSMS	HCT116MG_D190212_S4	4	522.7875366210938	2	522.78985	1043.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.361	1	24.095	23.595	24.595	-0.26549								0	0	0	0.69648	1	8579	8579		19.257	2.1441	1				32059	7358	20155	20267	30868	30868					0.04510627103036313
STLYYQLGDHE	11	Unmodified	_STLYYQLGDHE_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MSMS	HCT116MG_D190212_S4	4	663.30224609375	2	663.304049	1324.59355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.792	1	22.554	22.054	23.054	-0.23758								0	0	0	0.94145	1	7948	7948		10.8	0	1				32060	1845	20156	20268	30869	30869					-0.0557671977830978
STMDGAIAAA	10	Unmodified	_STMDGAIAAA_					0	0	0		SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant;SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant	SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	907.4191284179688	1	907.418959	906.411682	0.60551	0.00054945	0.2944	0.00026714	0.89991	0.00081659	907.4190396636882	28.32	0.36546	28.114	27.916	28.281	-0.20593					9	6	2	0	0	0	0.28012	1	10244	10244		52.268	2.3353	1	8473900			32061	4580	20157	20269	30870	30870					-0.045267310049325715
STMDGAIAAA	10	Unmodified	_STMDGAIAAA_					0	0	0		SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant;SMARCAD1|p.K734Qfs*6|1|0.31|ENSG00000163104|chr4:94278630-94278631|-/C|frameshift_variant;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant	SMARCAD1|p.K230Rfs*28|1|0.26|ENSG00000163104|chr4:94240985-94240985|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	907.418959	906.411682	0.70254	0.0006375	0.11101	0.00010073	0.81355	0.00073823	907.418973030615	28.333	0.2594	28.003	27.822	28.081	-0.32987	-0.055237	-8.5415E-05	NaN	52.268	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18419000			32062	4580	20157	20269							-0.045267310049325715
STMLLLWTF	9	Unmodified	_STMLLLWTF_					0	0	0		nc|ENSG00000130055|Q9HCC8-2|GDPD2;ENSG00000130055|ENST00000374382|GDPD2;nc|ENSG00000130055|Q9HCC8-3|GDPD2	nc|ENSG00000130055|Q9HCC8-2|GDPD2	nc|ENSG00000130055|Q9HCC8-2|GDPD2	MSMS	HCT116MG_D190212_S4	4	556.2965087890625	2	556.296453	1110.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.45	1	33.068	32.568	33.568	-0.38223								0	0	0	0.768	1	12178	12178		7.9102	0.62092	1				32063	3056	20158	20270	30871	30871					0.027487418907412575
STNEEDEK	8	Unmodified	_STNEEDEK_					0	0	0			REV__nc|ENSG00000071564|P15923-3|TCF3;REV__nc|ENSG00000071564|P15923-2|TCF3	REV__nc|ENSG00000071564|P15923-2|TCF3	MSMS	HCT116MG_D190212_S1	1	476.1986389160156	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.194	1	2.194	1.694	2.694	0								0	0	0	0.8837	1	660	660		0.69038	0	1		+		32064	10763;17077	20159	20271	30872	30872					-0.09429177100378183
STNEEDEK	8	Unmodified	_STNEEDEK_					0	0	0			REV__nc|ENSG00000071564|P15923-3|TCF3;REV__nc|ENSG00000071564|P15923-2|TCF3	REV__nc|ENSG00000071564|P15923-2|TCF3	MSMS	HCT116MG_D190212_S1	1	476.1988525390625	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8592	1	6.8592	6.3592	7.3592	0								0	0	0	0.8837	1	2072	2072		0.69038	0	1		+		32065	10763;17077	20159	20271	30873	30873					-0.09429177100378183
STNEEDEK	8	Unmodified	_STNEEDEK_					0	0	0			REV__nc|ENSG00000071564|P15923-3|TCF3;REV__nc|ENSG00000071564|P15923-2|TCF3	REV__nc|ENSG00000071564|P15923-2|TCF3	MSMS	HCT116MG_D190212_S1	1	476.1984558105469	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8924	1	7.8924	7.3924	8.3924	0								0	0	0	0.8837	1	2387	2387		0.69038	0	1		+		32066	10763;17077	20159	20271	30874	30874					-0.09429177100378183
STNEEDEK	8	Unmodified	_STNEEDEK_					0	0	0			REV__nc|ENSG00000071564|P15923-3|TCF3;REV__nc|ENSG00000071564|P15923-2|TCF3	REV__nc|ENSG00000071564|P15923-2|TCF3	MSMS	HCT116MG_D190212_S3	3	476.1986389160156	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.301	1	10.338	9.8383	10.838	0.037179								0	0	0	0.8837	1	3116	3116		0.69038	0	1		+		32067	10763;17077	20159	20271	30875	30875					-0.09429177100378183
STNGDDHQ	8	Unmodified	_STNGDDHQ_					0	0	0		IFIT1|p.K336Sfs*9|1|0.6|ENSG00000185745|chr10:89403276-89403276|A/-|frameshift_variant;ENSG00000185745|ENST00000371804|IFIT1	IFIT1|p.K336Sfs*9|1|0.6|ENSG00000185745|chr10:89403276-89403276|A/-|frameshift_variant	IFIT1|p.K336Sfs*9|1|0.6|ENSG00000185745|chr10:89403276-89403276|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	873.3340454101562	1	873.333315	872.326038	0.83113	0.00072585	0.36928	0.0003225	1.2004	0.0010484	873.3332993003042	16.983	0.20878	16.983	16.889	17.098	0					5	3	2	0	0	0	0.69862	1	5769	5769		23.148	5.0134	1	3676800			32068	5843	20160	20272	30876	30876					-0.11523179866230748
STNLPLSWNGY	11	Unmodified	_STNLPLSWNGY_					0	0	0			REV__nc|ENSG00000170482|Q9UHI7-2|SLC23A1	REV__nc|ENSG00000170482|Q9UHI7-2|SLC23A1	MSMS	HCT116MG_D190212_S4	4	626.3053588867188	2	626.303852	1250.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.011	1	33.626	33.126	34.126	-0.38426								0	0	0	0.95196	1	12402	12402		5.2969	0.39987	1		+		32069	13304	20161	20273	30877	30877					-0.022120947075109143
STNMWVEPNVE	11	Unmodified	_STNMWVEPNVE_					0	0	0			REV__ENSG00000204020|ENST00000404459|LIPN	REV__ENSG00000204020|ENST00000404459|LIPN	MSMS	HCT116MG_D190212_S4	4	653.2929077148438	2	653.292627	1304.5707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.454	1	38.072	37.572	38.572	-0.38163								0	0	0	0.95196	1	14094	14094		5.2969	1.7004	1		+		32070	14178	20162	20274	30878	30878					-0.06940062167473116
STNPREEP	8	Unmodified	_STNPREEP_					0	0	0		CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant;ENSG00000103326|ENST00000219611|CAPN15	CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant	CAPN15|p.V945Wfs*29|1|0.18|ENSG00000103326|chr16:552700-552700|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	465.2195739746094	2	465.219788	928.425024	0.073557	3.422E-05	-0.020605	-9.5858E-06	0.052952	2.4634E-05	465.219596650037	17.196	0.26014	17.28	17.173	17.433	0.084467					6	4	2	0	0	0	0.73076	1	5809	5809		19.439	0.18201	1	920580			32071	322	20163	20275	30879	30879					-0.0420515690133243
STNQHCSSPPA	11	Unmodified	_STNQHCSSPPA_					0	0	0			REV__KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant	REV__KDM6B|p.T676Hfs*8|1|0.18|ENSG00000132510|chr17:7848307-7848308|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	564.7410278320312	2	564.740562	1127.46657	-0.29553	-0.0001669	0.79214	0.00044735	0.49661	0.00028046	564.7410317101793	16.219	0.49269	16.055	15.771	16.264	-0.16364					16	9	2	0	0	0	0.74191	1	5242	5242		5.7319	0	1	1618200	+		32072	11993	20164	20276	30880	30880					-0.09206344204289962
STNRKYPPLP	10	Unmodified	_STNRKYPPLP_					0	0	0		nc|ENSG00000132670|P18433-6|PTPRA;ENSG00000132670|ENST00000399903|PTPRA	nc|ENSG00000132670|P18433-6|PTPRA	nc|ENSG00000132670|P18433-6|PTPRA	MULTI-MSMS	HCT116MG_D190212_S1	1	587.326904296875	2	586.824755	1171.63496	0.40952	0.00024032	-1.0948	-0.00064244	-0.68526	-0.00040213	587.3263512025587	50.292	0.36085	50.292	50.059	50.42	0					8	6	2	0	0	0	0.8392	1	19218	19218		8.7454	3.0136	1	11348000			32073	3200	20165	20277	30881	30881					0.05600505771644748
STNRLCHLRNT	11	Unmodified	_STNRLCHLRNT_					0	0	0			REV__nc|ENSG00000288235|P0CH98|FAM106C	REV__nc|ENSG00000288235|P0CH98|FAM106C	MULTI-MSMS	HCT116MG_D190212_S4	4	657.8356323242188	2	657.838402	1313.66225	0.70858	0.00046613	-0.25193	-0.00016573	0.45665	0.0003004	658.3414413092859	36.402	0.61663	36.017	35.818	36.434	-0.38558					15	11	2	0	0	0	0.72792	1	13361	13361		11.495	0	1	4527400	+		32074	17318	20166	20278	30882	30882					0.017966660403544665
STNWLASTP	9	Unmodified	_STNWLASTP_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MSMS	HCT116MG_D190212_S3	3	488.7423095703125	2	488.740357	975.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.091	1	22.092	21.592	22.592	0.00074577								0	0	0	0.67173	1	7732	7732		20.454	2.3186	1				32075	4380	20167	20279	30883	30883					-0.022553958618573233
STNYFWLP	8	Unmodified	_STNYFWLP_					0	0	0			REV__RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	REV__RHOBTB3|p.K539Rfs*53|1|0.25|ENSG00000164292|chr5:95783952-95783952|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	514.2293701171875	2	514.247818	1026.48108	0.17984	9.2483E-05	0.19587	0.00010072	0.37571	0.00019321	514.2478777144626	31.229	0.36096	30.858	30.559	30.919	-0.37026					8	6	2	0	0	0	0.81097	1	11276	11276		10.183	0.10947	1	2577500	+		32076	12994	20168	20280	30884	30884					-0.031099039938681017
STPADAWRAEA	11	Unmodified	_STPADAWRAEA_					0	0	0		ENSG00000196371|ENST00000358752|FUT4	ENSG00000196371|ENST00000358752|FUT4	ENSG00000196371|ENST00000358752|FUT4	MULTI-MSMS	HCT116MG_D190212_S4	4	587.7781372070312	2	587.778002	1173.54145	0.50125	0.00029462	-0.18269	-0.00010738	0.31856	0.00018724	587.7779825635547	26.213	1.0921	25.92	25.512	26.604	-0.29371					39	20	3	0	0	0	0.72373	1	9524	9524		13.042	0	1	6948900			32077	6064	20169	20281	30885	30885					-0.038378384014322364
STPAFSDTSRI	11	Unmodified	_STPAFSDTSRI_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S3	3	591.2936401367188	2	591.293485	1180.57242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.298	1	28.092	27.592	28.592	-0.20593								0	0	0	0.94012	1	10235	10235		11.495	2.7493	1				32078	5624	20170	20282	30886	30886					-0.01064685087203543
STPAGGTTWAT	11	Unmodified	_STPAGGTTWAT_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	MSMS	HCT116MG_D190212_S3	3	524.9144897460938	2	525.248546	1048.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.225	1	23.185	22.685	23.685	-0.03968								0	0	0	0.84073	1	8189	8189		27.629	0	1				32079	9373	20171	20283	30887	30887					-0.03976314695773908
STPAGILHSDG	11	Unmodified	_STPAGILHSDG_					0	0	0			REV__ENSG00000121871|ENST00000475390|SLITRK3	REV__ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	HCT116MG_D190212_S4	4	527.7621459960938	2	527.76182	1053.50909	0.14115	7.4494E-05	-0.0029622	-1.5633E-06	0.13819	7.2931E-05	527.7617977732951	17.629	0.25954	17.458	17.277	17.536	-0.17047					6	4	2	0	0	0	0.67041	1	5866	5866		27.629	4.8925	1	1602300	+		32080	11722	20172	20284	30888	30888					-0.015526258044474162
STPAGILHSDG	11	Unmodified	_STPAGILHSDG_					0	0	0			REV__ENSG00000121871|ENST00000475390|SLITRK3	REV__ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	527.76182	1053.50909	0.14295	7.5445E-05	2.2326	0.0011783	2.3755	0.0012537	527.7623234633371	17.404	0.52019	17.485	17.117	17.638	0.081358	0.013298	0.0020277	NaN	27.629	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1713600	+		32081	11722	20172	20284							-0.015526258044474162
STPAGILHSDG	11	Unmodified	_STPAGILHSDG_					0	0	0			REV__ENSG00000121871|ENST00000475390|SLITRK3	REV__ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	527.76182	1053.50909	0.14115	7.4494E-05	-0.0029622	-1.5633E-06	0.13819	7.2931E-05	527.7617977732951	17.629	0.25954	17.458	17.277	17.536	-0.17047	-0.013298	-0.000332	NaN	27.629	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1602300	+		32082	11722	20172	20284							-0.015526258044474162
STPAGWASER	10	Unmodified	_STPAGWASER_					0	0	0		ENST00000296785.7_1_5:72858805-72861416:-|nuORF	ENST00000296785.7_1_5:72858805-72861416:-|nuORF	ENST00000296785.7_1_5:72858805-72861416:-|nuORF	MSMS	HCT116MG_D190212_S4	4	531.2537841796875	2	531.254163	1060.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.13	1	20.92	20.42	21.42	-0.20959								0	0	0	0.76907	1	7276	7276		32.786	3.7041	1				32083	6986	20173	20285	30889	30889					-0.034054926016324316
STPAHPGA	8	Unmodified	_STPAHPGA_					0	0	0		ENST00000297293.5_1_7:97834930-97835215:+|nuORF	ENST00000297293.5_1_7:97834930-97835215:+|nuORF	ENST00000297293.5_1_7:97834930-97835215:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	737.2403564453125	1	737.357679	736.350402	0.19902	0.00014675	0.74505	0.00054937	0.94407	0.00069612	737.3582328370303	17.803	0.31239	17.884	17.69	18.002	0.081358					8	5	2	0	0	0	0.32676	1	5943	5943		4.756	2.1785	1	2438700			32084	6987	20174	20286	30890	30890					-0.028318749220488826
STPAHPGA	8	Unmodified	_STPAHPGA_					0	0	0		ENST00000297293.5_1_7:97834930-97835215:+|nuORF	ENST00000297293.5_1_7:97834930-97835215:+|nuORF	ENST00000297293.5_1_7:97834930-97835215:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	737.2404174804688	1	737.357679	736.350402	0.64782	0.00047767	0.29353	0.00021644	0.94135	0.00069411	737.3578784804803	17.941	0.36397	17.766	17.584	17.948	-0.17501					9	6	2	0	0	0	0.28869	1	5990	5990		18.135	0	1	1801700			32085	6987	20174	20286	30891	30891					-0.028318749220488826
STPALRTPMFM	11	Unmodified	_STPALRTPMFM_					0	0	0		GPR6|p.V109M|1|0.45|ENSG00000146360|chr6:109979437-109979437|G/A|missense_variant	GPR6|p.V109M|1|0.45|ENSG00000146360|chr6:109979437-109979437|G/A|missense_variant	GPR6|p.V109M|1|0.45|ENSG00000146360|chr6:109979437-109979437|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	626.314697265625	2	626.314851	1250.61515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.628	1	21.41	20.91	21.91	-0.21832								0	0	0	0.92235	1	7477	7477		17.113	2.2746	1				32086	9193	20175	20287	30892	30892					-0.0001332955496309296
STPALRTPMFM	11	Unmodified	_STPALRTPMFM_					0	0	0		GPR6|p.V109M|1|0.45|ENSG00000146360|chr6:109979437-109979437|G/A|missense_variant	GPR6|p.V109M|1|0.45|ENSG00000146360|chr6:109979437-109979437|G/A|missense_variant	GPR6|p.V109M|1|0.45|ENSG00000146360|chr6:109979437-109979437|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	626.3146362304688	2	626.314851	1250.61515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.55	1	31.18	30.68	31.68	-0.37026								0	0	0	0.89672	1	11455	11455		20.415	8.1739	1				32087	9193	20175	20287	30893	30893					-0.0001332955496309296
STPAMAKAAQ	10	Unmodified	_STPAMAKAAQ_					0	0	0			REV__ENSG00000143436|ENST00000368830|MRPL9	REV__ENSG00000143436|ENST00000368830|MRPL9	MSMS	HCT116MG_D190212_S4	4	488.25030517578125	2	488.250034	974.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.968	1	32.586	32.086	33.086	-0.38223								0	0	0	0.88261	1	12029	12029		18.146	0	1		+		32088	12392	20176	20288	30894	30894					-0.0027476284260501416
STPAPPSTRAP	11	Unmodified	_STPAPPSTRAP_					0	0	0			REV__PER2|p.E569Rfs*35|1|0.05|ENSG00000132326|chr2:238258568-238258568|G/-|frameshift_variant	REV__PER2|p.E569Rfs*35|1|0.05|ENSG00000132326|chr2:238258568-238258568|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	541.2857666015625	2	541.285463	1080.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.536	1	18.173	17.673	18.673	-0.36325								0	0	0	0.82946	1	6376	6376		29.082	5.061	1		+		32089	17408	20177	20289	30895	30895					0.019316534665676954
STPAPSRTAYF	11	Unmodified	_STPAPSRTAYF_					0	0	0		ACLY|p.S455Y|1|0.24|ENSG00000131473|chr17:41897814-41897814|G/T|missense_variant	ACLY|p.S455Y|1|0.24|ENSG00000131473|chr17:41897814-41897814|G/T|missense_variant	ACLY|p.S455Y|1|0.24|ENSG00000131473|chr17:41897814-41897814|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	599.8012084960938	2	599.29857	1196.58259	1.1981	0.000718	-0.62843	-0.00037662	0.56963	0.00034138	599.2983748556599	27.947	0.87377	27.626	27.096	27.97	-0.32157					37	16	3	0	0	0	0.71271	1	10163	10163		17.113	4.0704	1	6342400			32090	24	20178	20290	30896	30896					-0.00784077361981872
STPAQTPLAAP	11	Unmodified	_STPAQTPLAAP_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74598513-74598831:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MSMS	HCT116MG_D190212_S2	2	527.2831420898438	2	527.282389	1052.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.126	1	24.75	24.25	25.25	-0.37521								0	0	0	0.91433	1	9034	9034		18.146	0	1				32091	6354	20179	20291	30897	30897					0.026051352350577872
STPAQTPLAAP	11	Unmodified	_STPAQTPLAAP_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74598513-74598831:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	527.7713623046875	2	527.282389	1052.55022	0.30426	0.00016043	1.5789	0.00083252	1.8832	0.00099295	527.2824323667639	21.749	0.41606	21.364	21.167	21.583	-0.38503					15	7	3	0	0	0	0.3453	1	7712	7712		24.021	0	1	8260100			32092	6354	20179	20291	30898	30898					0.026051352350577872
STPASAPLPPL	11	Unmodified	_STPASAPLPPL_					0	0	0			REV__nc|ENSG00000182257|Q9NV39|PRR34	REV__nc|ENSG00000182257|Q9NV39|PRR34	MSMS	HCT116MG_D190212_S3	3	525.79541015625	2	525.795132	1049.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.257	1	22.258	21.758	22.758	0.00074577								0	0	0	0.88801	1	7799	7799		21.537	0	1		+		32093	17235	20180	20292	30899	30899					0.052906097574805244
STPASRLTPPP	11	Unmodified	_STPASRLTPPP_					0	0	0		ENST00000538079.1_1_12:6882155-6887174:+|nuORF	ENST00000538079.1_1_12:6882155-6887174:+|nuORF	ENST00000538079.1_1_12:6882155-6887174:+|nuORF	MSMS	HCT116MG_D190212_S2	2	562.3090209960938	2	562.308938	1122.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.788	1	19.413	18.913	19.913	-0.37503								0	0	0	0.93717	1	6881	6881		13.042	2.2185	1				32094	8676	20181	20293	30900	30900					0.04692513017721467
STPATCTPTSS	11	Unmodified	_STPATCTPTSS_					0	0	0			REV__IQSEC3|p.E747Rfs*58|1|0.37|ENSG00000120645|chr12:157106-157106|G/-|frameshift_variant	REV__IQSEC3|p.E747Rfs*58|1|0.37|ENSG00000120645|chr12:157106-157106|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7307739257812	2	526.731871	1051.44919	0.37451	0.00019727	-0.56245	-0.00029626	-0.18793	-9.8991E-05	526.7316386220942	16.399	0.46921	16.057	15.891	16.36	-0.34183					12	8	2	0	0	0	0.7259	1	5541	5541		12.241	0.60036	1	1595600	+		32095	16906	20182	20294	30901	30901					-0.07447684529961407
STPAVDSSWQN	11	Unmodified	_STPAVDSSWQN_					0	0	0			REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	MSMS	HCT116MG_D190212_S4	4	596.26708984375	2	596.267467	1190.52038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.96	1	22.722	22.222	23.222	-0.23758								0	0	0	0.93717	1	8015	8015		13.042	2.243	1		+		32096	10818	20183	20295	30902	30902					-0.06725848500923348
STPAWRPGP	9	Unmodified	_STPAWRPGP_					0	0	0		ENST00000374024.3_1_1:27721873-27722296:+|nuORF	ENST00000374024.3_1_1:27721873-27722296:+|nuORF	ENST00000374024.3_1_1:27721873-27722296:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	485.242919921875	2	484.751059	967.487565	0.2466	0.00011954	-0.18085	-8.7668E-05	0.065753	3.1874E-05	484.750907666006	34.137	0.15653	34.137	34.024	34.181	0					4	2	2	0	0	0	0.24195	1	12648	12648		12.532	5.2423	1	3670500			32097	7487	20184	20296	30903	30903					0.0025203395751987046
STPAWRPGP	9	Unmodified	_STPAWRPGP_					0	0	0		ENST00000374024.3_1_1:27721873-27722296:+|nuORF	ENST00000374024.3_1_1:27721873-27722296:+|nuORF	ENST00000374024.3_1_1:27721873-27722296:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	484.751059	967.487565	0.29003	0.00014059	0.28343	0.00013739	0.57345	0.00027798	484.7509643847127	34.325	0.20769	34.15	34.02	34.227	-0.17512	0.0061728	0.00036681	NaN	7.9102	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20552000			32098	7487	20184	20296							0.0025203395751987046
STPCDPNSGSC	11	Unmodified	_STPCDPNSGSC_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;LAMB2|p.G1425Vfs*27|1|0.36|ENSG00000172037|chr3:49123003-49123003|C/-|frameshift_variant	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MSMS	HCT116MG_D190212_S4	4	534.2413330078125	2	534.192056	1066.36956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.732	1	16.565	16.065	17.065	-0.16664								0	0	0	0.95113	1	5499	5499		5.7319	1.7875	1				32099	5230	20185	20297	30904	30904					-0.16097074475601403
STPCMWGASAP	11	Unmodified	_STPCMWGASAP_					0	0	0		ENST00000467414.1_1_7:100660553-100660886:+|nuORF	ENST00000467414.1_1_7:100660553-100660886:+|nuORF	ENST00000467414.1_1_7:100660553-100660886:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	554.7207641601562	2	554.233527	1106.4525	0.27451	0.00015214	-0.73973	-0.00040998	-0.46522	-0.00025784	554.2330128223759	23.364	0.57514	23.116	22.853	23.428	-0.24775					12	10	2	0	0	0	0.72139	1	8100	8100		13.906	2.2658	1	2102200			32100	8116	20186	20298	30905	30905					-0.0964671295696462
STPCPLVTGP	10	Unmodified	_STPCPLVTGP_					0	0	0			REV__nc|ENSG00000117560|P48023-2|FASLG	REV__nc|ENSG00000117560|P48023-2|FASLG	MSMS	HCT116MG_D190212_S3	3	486.2454833984375	2	486.24696	970.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.857	1	31.586	31.086	32.086	-0.27028								0	0	0	0.90475	1	11654	11654		14.838	0.25658	1		+		32101	11618	20187	20299	30906	30906					-0.0070528107411291785
STPCRTARAP	10	Unmodified	_STPCRTARAP_					0	0	0		ENST00000554479.5_1_14:100204119-100317222:+|nuORF	ENST00000554479.5_1_14:100204119-100317222:+|nuORF	ENST00000554479.5_1_14:100204119-100317222:+|nuORF	MSMS	HCT116MG_D190212_S4	4	530.2716674804688	2	530.271832	1058.52911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.492	1	34.106	33.606	34.606	-0.38558								0	0	0	0.87399	1	12597	12597		19.257	4.4187	1				32102	8778	20188	20300	30907	30907					0.002188466545248957
STPDESPEPV	10	Unmodified	_STPDESPEPV_					0	0	0			REV__PALM3|p.V281Wfs*12|1|0.19|ENSG00000187867|chr19:14054786-14054786|C/-|frameshift_variant	REV__PALM3|p.V281Wfs*12|1|0.19|ENSG00000187867|chr19:14054786-14054786|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.8610229492188	2	529.237844	1056.46113	0.39589	0.00020952	-0.035211	-1.8635E-05	0.36068	0.00019088	529.2384134791371	17.875	0.20903	17.519	17.388	17.597	-0.35647					5	3	2	0	0	0	0.29442	1	6074	6074		6.2058	0	1	5212100	+		32103	13940	20189	20301	30908	30908					-0.06483744515139733
STPDHIREIAE	11	Unmodified	_STPDHIREIAE_					0	0	0		MTR|p.R518Gfs*7|1|0.16|ENSG00000116984|chr1:236850378-236850378|C/-|frameshift_variant;MTR|p.F598Sfs*14|1|0.12|ENSG00000116984|chr1:236852615-236852615|T/-|frameshift_variant;MTR|p.T834Nfs*6|1|0.29|ENSG00000116984|chr1:236874751-236874752|-/A|frameshift_variant;MTR|p.G1106Wfs*10|1|0.49|ENSG00000116984|chr1:236894464-236894465|-/T|frameshift_variant;nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	MTR|p.R518Gfs*7|1|0.16|ENSG00000116984|chr1:236850378-236850378|C/-|frameshift_variant	MTR|p.R518Gfs*7|1|0.16|ENSG00000116984|chr1:236850378-236850378|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	634.319091796875	2	634.317491	1266.62043	0.42872	0.00027195	0.83753	0.00053126	1.2663	0.00080321	634.3183893343211	20.636	1.0909	20.435	20.092	21.183	-0.20133					23	20	2	0	0	0	0.74111	1	7278	7278		12.241	6.0349	1	2204900			32104	2550	20190	20302	30909	30909					-0.0022161116712595685
STPDKKDYEQP	11	Unmodified	_STPDKKDYEQP_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MSMS	HCT116MG_D190212_S4	4	654.7784423828125	2	654.309332	1306.60411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.266	1	24.008	23.508	24.508	-0.25816								0	0	0	0.93717	1	8541	8541		13.042	0	1				32105	4653	20191	20303	30910	30910					-0.03692737123901679
STPDPGGAP	9	Unmodified	_STPDPGGAP_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	HCT116MG_D190212_S3	3	798.3634033203125	1	798.362824	797.355547	0.73567	0.00058733	0.078064	6.2323E-05	0.81373	0.00064965	798.362730875754	19.092	1.9266	19.161	18.146	20.072	0.069159					55	36	2	0	0	0	0.24973	1	6723	6723		36.044	5.8194	1	6770500	+		32106	10852	20192	20304	30911	30911					-0.051236158500842066
STPDWTWP	8	Unmodified	_STPDWTWP_					0	0	0			REV__nc|ENSG00000179954|A1L4H1-2|SSC5D	REV__nc|ENSG00000179954|A1L4H1-2|SSC5D	MSMS	HCT116MG_D190212_S3	3	495.2200012207031	2	495.2218	988.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.304	1	17.386	16.886	17.886	0.082464								0	0	0	0.8837	1	5804	5804		9.3474	0	1		+		32107	13649	20193	20305	30912	30912					-0.06563067407626022
STPDWTWP	8	Unmodified	_STPDWTWP_					0	0	0			REV__nc|ENSG00000179954|A1L4H1-2|SSC5D	REV__nc|ENSG00000179954|A1L4H1-2|SSC5D	MSMS	HCT116MG_D190212_S4	4	495.2199401855469	2	495.2218	988.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.827	1	16.66	16.16	17.16	-0.16664								0	0	0	0.8396	1	5537	5537		19.439	5.9311	1		+		32108	13649	20193	20305	30913	30913					-0.06563067407626022
STPELAHPP	9	Unmodified	_STPELAHPP_					0	0	0		ENST00000477948.1_1_1:107866915-107871621:+|nuORF;NTNG1|p.F232Lfs*31|1|0.29|ENSG00000162631|chr1:107324726-107324726|T/-|frameshift_variant;nc|ENSG00000162631|Q9Y2I2-2|NTNG1;ENST00000294649.8_1_1:107691215-107950335:+|nuORF;nc|ENSG00000162631|Q9Y2I2-1|NTNG1;nc|ENSG00000162631|Q9Y2I2-5|NTNG1;nc|ENSG00000162631|Q9Y2I2-4|NTNG1;nc|ENSG00000162631|Q9Y2I2-6|NTNG1;ENSG00000162631|ENST00000370068|NTNG1	ENST00000477948.1_1_1:107866915-107871621:+|nuORF	ENST00000477948.1_1_1:107866915-107871621:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	475.21661376953125	2	474.742899	947.471246	0.30393	0.00014429	-0.20363	-9.6674E-05	0.1003	4.7615E-05	474.7426334540074	25.232	0.46904	25.126	24.787	25.256	-0.10618					14	8	2	0	0	0	0.19218	1	9036	9036		42.095	4.1206	1	6937400			32109	4537	20194	20306	30914	30914					-0.004590919992438103
STPESATLSE	10	Unmodified	_STPESATLSE_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MSMS	HCT116MG_D190212_S3	3	511.2378234863281	2	511.237844	1020.46113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.7	1	19.76	19.26	20.26	0.05983								0	0	0	0.88261	1	6771	6771		18.146	0.011366	1				32110	3437	20195	20307	30915	30915					-0.04827744515125687
STPESSQLGSP	11	Unmodified	_STPESSQLGSP_					0	0	0			REV__ENST00000397054.7_1_1:43212112-43212304:-|nuORF	REV__ENST00000397054.7_1_1:43212112-43212304:-|nuORF	MSMS	HCT116MG_D190212_S4	4	545.256591796875	2	545.256568	1088.49858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.274	1	24.995	24.495	25.495	-0.27958								0	0	0	0.84073	1	8948	8948		27.629	4.8925	1		+		32111	15364	20196	20308	30916	30916					-0.042126532495103675
STPFPYNP	8	Unmodified	_STPFPYNP_					0	0	0		ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2;ENST00000443451.6_1_12:124809950-124819187:-|nuORF;nc|ENSG00000196498|Q9Y618-2|NCOR2;ENST00000418829.5_1_12:124809950-124810795:-|nuORF;NCOR2|p.A2454T|1|0.49|ENSG00000196498|chr12:124326194-124326194|C/T|missense_variant	ENSG00000196498|ENST00000405201|NCOR2	ENSG00000196498|ENST00000405201|NCOR2	MSMS	HCT116MG_D190212_S3	3	461.7169494628906	2	461.718893	921.423233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.055	1	17.14	16.64	17.64	0.084467								0	0	0	0.8837	1	5704	5704		14.582	1.0738	1				32112	6077	20197	20309	30917	30917					-0.04062165919299332
STPFRDLLFP	10	Unmodified	_STPFRDLLFP_					0	0	0		ENST00000505677.1_1_5:98106807-98109161:-|nuORF	ENST00000505677.1_1_5:98106807-98109161:-|nuORF	ENST00000505677.1_1_5:98106807-98109161:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	596.1668701171875	2	596.821681	1191.62881	0.60434	0.00036068	-2.5841	-0.0015422	-1.9797	-0.0011816	596.8197741517254	23.189	0.26045	22.804	22.622	22.882	-0.3852					7	4	2	0	0	0	0.30856	1	8181	8181		3.5965	0.8613	1	3481200			32113	8451	20198	20310	30918	30918					0.040659875401161116
STPGIVCTLCI	11	Unmodified	_STPGIVCTLCI_					0	0	0		ENST00000285021.11_1_3:14193875-14197868:-|nuORF	ENST00000285021.11_1_3:14193875-14197868:-|nuORF	ENST00000285021.11_1_3:14193875-14197868:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	553.783203125	2	553.782853	1105.55115	0.4608	0.00025518	0.16109	8.9209E-05	0.62189	0.00034439	553.782939565323	21.58	1.1423	21.362	20.751	21.893	-0.21832					55	21	4	0	0	0	0.62391	1	7516	7516		32.786	7.7947	1	18348000			32114	6946	20199	20311	30919	30919					0.0025989028808908188
STPGLGSSWS	10	Unmodified	_STPGLGSSWS_					0	0	0		ENST00000575331.1_1_17:7342939-7343908:+|nuORF	ENST00000575331.1_1_17:7342939-7343908:+|nuORF	ENST00000575331.1_1_17:7342939-7343908:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	489.7300720214844	2	489.729989	977.445425	-0.022438	-1.0989E-05	-0.1529	-7.4877E-05	-0.17533	-8.5866E-05	489.73002226705137	26.716	0.46753	26.415	26.182	26.649	-0.30087					13	8	2	0	0	0	0.78781	1	9555	9555		13.042	0.80181	1	3401400			32115	8918	20200	20312	30920	30920					-0.04419986241521201
STPGLSKYRP	10	Unmodified	_STPGLSKYRP_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MSMS	HCT116MG_D190212_S3	3	553.3054809570312	2	553.303655	1104.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.505	1	27.323	26.823	27.823	-0.18163								0	0	0	0.82636	1	9915	9915		25.399	2.663	1				32116	1138	20201	20313	30921	30921					0.04464530363270569
STPGPEDQPLT	11	Unmodified	_STPGPEDQPLT_					0	0	0		ENSG00000131042|ENST00000314446|LILRB2	ENSG00000131042|ENST00000314446|LILRB2	ENSG00000131042|ENST00000314446|LILRB2	MSMS	HCT116MG_D190212_S4	4	571.711181640625	2	571.272218	1140.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.749	1	23.501	23.001	24.001	-0.24775								0	0	0	0.93717	1	8332	8332		13.042	2.2185	1				32117	3123	20202	20314	30922	30922					-0.034760802154323756
STPGQPPPQ	9	Unmodified	_STPGQPPPQ_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MSMS	HCT116MG_D190212_S3	3	454.727294921875	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.276	1	24.215	23.715	24.715	-0.061449								0	0	0	0.30227	1	8613	8613		39.957	1.8061	1				32118	5719	20203	20315	30923	30923					-0.01747665033337853
STPGQPPPQ	9	Unmodified	_STPGQPPPQ_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MSMS	HCT116MG_D190212_S4	4	454.72723388671875	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.288	1	24.029	23.529	24.529	-0.25816								0	0	0	0.1044	1	8549	8549		54.774	12.679	1				32119	5719	20203	20315	30924	30924					-0.01747665033337853
STPGQPPPQPQ	11	Unmodified	_STPGQPPPQPQ_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.P2793Rfs*46|1|0.3|ENSG00000183495|chr12:132064707-132064707|C/-|frameshift_variant;EP400|p.Q1630Sfs*11|1|0.4|ENSG00000183495|chr12:132025670-132025670|C/-|frameshift_variant;EP400|p.L2071Rfs*37|1|0.23|ENSG00000183495|chr12:132043308-132043326|TCAAGAGTATTGAGTATCT/-|frameshift_variant	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MSMS	HCT116MG_D190212_S4	4	567.2846069335938	2	567.28292	1132.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.606	1	28.274	27.774	28.774	-0.33138								0	0	0	0.83401	1	10294	10294		28.495	13.656	1				32120	5719	20204	20316	30925	30925					-0.009686503960438131
STPGRFQGS	9	Unmodified	_STPGRFQGS_					0	0	0		ENSG00000042088|ENST00000335725|TDP1;ENST00000545686.6_1_14:90450866-90453380:+|nuORF;nc|ENSG00000042088|Q9NUW8-2|TDP1	ENSG00000042088|ENST00000335725|TDP1	ENSG00000042088|ENST00000335725|TDP1	MULTI-MSMS	HCT116MG_D190212_S3	3	468.7303771972656	2	468.730323	935.446094	0.23237	0.00010892	0.020677	9.692E-06	0.25305	0.00011861	468.73018193930824	15.584	1.1448	15.67	14.884	16.029	0.085424					46	21	3	0	0	0	0.16306	1	5122	5122		45.7	9.6554	1	5814900			32121	1007	20205	20317	30926	30926					-0.024211468017938387
STPGTSPRPDF	11	Unmodified	_STPGTSPRPDF_					0	0	0			REV__ENST00000482189.1_1_12:100403505-100403562:-|nuORF	REV__ENST00000482189.1_1_12:100403505-100403562:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	581.2804565429688	2	581.280377	1160.5462	0.41477	0.0002411	0.15331	8.9114E-05	0.56808	0.00033021	581.2804734100661	22.328	0.52099	22.328	21.99	22.511	0.00074577					16	9	2	0	0	0	0.68491	1	7762	7762		26.021	1.0297	1	3915700	+		32122	15961	20206	20318	30927	30927					-0.027649542586686948
STPGVLPYFP	10	Unmodified	_STPGVLPYFP_					0	0	0		ENST00000570306.5_1_17:19284999-19286541:+|nuORF;nc|ENSG00000166484|Q13164-2|MAPK7;ENSG00000166484|ENST00000395604|MAPK7	ENST00000570306.5_1_17:19284999-19286541:+|nuORF	ENST00000570306.5_1_17:19284999-19286541:+|nuORF	MSMS	HCT116MG_D190212_S4	4	539.2839965820312	2	539.2844	1076.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.42	1	24.151	23.651	24.651	-0.26881								0	0	0	0.86471	1	8603	8603		20.454	9.6297	1				32123	4860	20207	20319	30928	30928					0.01903224728744135
STPGVREYS	9	Unmodified	_STPGVREYS_					0	0	0			REV__PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	REV__PRRC2A|p.A1596Gfs*24|1|0.1|ENSG00000204469|chr6:31634300-31634301|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	498.2396240234375	2	498.243264	994.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.019	1	24.739	24.239	25.239	-0.27958								0	0	0	0.22299	1	8845	8845		45.7	5.4604	1		+		32124	14198	20208	20320	30929	30929					-0.025482973501880224
STPHRPWCL	9	Unmodified	_STPHRPWCL_					0	0	0			REV__ENST00000503042.5_1_5:1325844-1330799:-|nuORF	REV__ENST00000503042.5_1_5:1325844-1330799:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	549.301025390625	2	548.771468	1095.52838	0.33033	0.00018127	3.6472	0.0020015	3.9775	0.0021828	548.7739274965461	15.998	0.31323	15.663	15.376	15.689	-0.33451					6	5	2	0	0	0	0.57626	1	5318	5318		12.532	5.2423	1	1491300	+		32125	16124	20209	20321	30930	30930					-0.015559479945295607
STPHRPWCL	9	Unmodified	_STPHRPWCL_					0	0	0			REV__ENST00000503042.5_1_5:1325844-1330799:-|nuORF	REV__ENST00000503042.5_1_5:1325844-1330799:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	548.771468	1095.52838	0.33033	0.00018127	3.6472	0.0020015	3.9775	0.0021828	548.7739274965461	15.998	0.31323	15.663	15.376	15.689	-0.33451	0	0	NaN	12.532	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1491300	+		32126	16124	20209	20321							-0.015559479945295607
STPHVSCQSP	10	Unmodified	_STPHVSCQSP_					0	0	0		ENST00000609796.1_1_20:1460117-1472086:-|nuORF	ENST00000609796.1_1_20:1460117-1472086:-|nuORF	ENST00000609796.1_1_20:1460117-1472086:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	521.7353515625	2	521.734748	1041.45494	0.12031	6.2769E-05	-0.049857	-2.6012E-05	0.070452	3.6757E-05	521.7347047574863	17.812	2.8102	17.894	16.233	19.043	0.081358					80	53	2	0	0	0	0.83158	1	5526	5526		9.3831	1.473	1	5609600			32127	9133	20210	20322	30931	30931					-0.06412541227632573
STPIEQHLHLD	11	Unmodified	_STPIEQHLHLD_					0	0	0			REV__ENST00000597330.1_1_19:58557124-58557196:+|nuORF	REV__ENST00000597330.1_1_19:58557124-58557196:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	644.8408203125	2	645.327859	1288.64116	0.70777	0.00045675	-0.34839	-0.00022482	0.35939	0.00023192	645.3276222533182	29.82	1.4056	29.584	28.719	30.124	-0.23655					61	26	3	0	0	0	0.72792	1	10652	10652		11.495	0	1	15801000	+		32128	13214	20211	20323	30932	30932					0.008389792125399254
STPINDLHE	9	Unmodified	_STPINDLHE_					0	0	0			REV__SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant	REV__SALL1|p.P561Qfs*45|1|0.26|ENSG00000103449|chr16:51140540-51140540|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	513.248779296875	2	513.248546	1024.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.194	1	31.819	31.319	32.319	-0.37529								0	0	0	0.76603	1	11716	11716		14.838	1.7958	1		+		32129	11191	20212	20324	30933	30933					-0.028723146957418066
STPINLFNTA	10	Unmodified	_STPINLFNTA_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MSMS	HCT116MG_D190212_S2	2	539.2828979492188	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.467	1	21.085	20.585	21.585	-0.38288								0	0	0	0.91279	1	7557	7557		13.042	0	1				32130	910	20213	20325	30934	30934					0.01501135235048423
STPINNANP	9	Unmodified	_STPINNANP_					0	0	0			REV__ENST00000413366.7_1_17:64803756-64804182:+|nuORF	REV__ENST00000413366.7_1_17:64803756-64804182:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	465.7376708984375	2	464.230156	926.445759	-0.17446	-8.0988E-05	-0.77904	-0.00036165	-0.9535	-0.00044264	464.2280550402564	18.089	0.62122	17.914	17.532	18.153	-0.17501					34	11	4	0	0	0	0.21251	1	5981	5981		39.957	18.211	1	4490200	+		32131	15456	20214	20326	30935	30935					-0.020405665216799207
STPKDRHSQWK	11	Unmodified	_STPKDRHSQWK_					0	0	0			REV__ENSG00000121895|ENST00000381938|TMEM156	REV__ENSG00000121895|ENST00000381938|TMEM156	MSMS	HCT116MG_D190212_S4	4	685.3519897460938	2	685.3522	1368.68985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.74	1	26.439	25.939	26.939	-0.30087								0	0	0	0.94625	1	9540	9540		14.405	7.3037	1		+		32132	11723	20215	20327	30936	30936					0.02024892572239878
STPKDVTHVSE	11	Unmodified	_STPKDVTHVSE_					0	0	0			REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	REV__nc|ENSG00000135241|Q9NP80-3|PNPLA8	MSMS	HCT116MG_D190212_S4	4	600.2993774414062	2	600.298767	1198.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.322	1	22.094	21.594	22.594	-0.22777								0	0	0	0.9387	1	7758	7758		12.241	0.74595	1		+		32133	12080	20216	20328	30937	30937					-0.008367024327753825
STPKQDNPP	9	Unmodified	_STPKQDNPP_					0	0	0		CNKSR2|p.S702N|1|0.08|ENSG00000149970|chrX:21606839-21606839|G/A|missense_variant	CNKSR2|p.S702N|1|0.08|ENSG00000149970|chrX:21606839-21606839|G/A|missense_variant	CNKSR2|p.S702N|1|0.08|ENSG00000149970|chrX:21606839-21606839|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	491.7642822265625	2	492.243264	982.471974	0.07593	3.7376E-05	0.016322	8.0343E-06	0.092252	4.541E-05	492.2433665677133	31.016	0.46915	30.755	30.448	30.917	-0.26071					12	8	2	0	0	0	0.24195	1	11209	11209		18.135	1.1927	1	3649000			32134	493	20217	20329	30938	30938					-0.01996297350194709
STPKQLIET	9	Unmodified	_STPKQLIET_					0	0	0		ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7841796875	2	508.784764	1015.55498	-0.012879	-6.5529E-06	-0.27053	-0.00013764	-0.28341	-0.00014419	508.7845115742764	36.439	0.20819	36.138	36.041	36.249	-0.30113					6	3	2	0	0	0	0.26536	1	13495	13495		34.402	2.0962	1	3542700			32135	3935	20218	20330	30939	30939					0.04782019377819324
STPKQLIET	9	Unmodified	_STPKQLIET_					0	0	0		ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	MULTI-MATCH	HCT116MG_D190212_S2	2		2	508.784764	1015.55498	0.58004	0.00029511	0.12951	6.5894E-05	0.70955	0.00036101	508.78485715483527	36.276	0.20727	36.148	36.019	36.226	-0.12799	-0.036541	-8.0219E-05	NaN	34.402	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11420000			32136	3935	20218	20330							0.04782019377819324
STPKTSPPP	9	Unmodified	_STPKTSPPP_					0	0	0		ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ADGRG4|p.D2874Rfs*16|1|0.45|ENSG00000156920|chrX:136403281-136403282|-/A|frameshift_variant;ADGRG4|p.F2955Vfs*21|1|0.32|ENSG00000156920|chrX:136405894-136405895|-/G|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4	ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	456.2451171875	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.628	1	23.381	22.881	23.881	-0.24775								0	0	0	0.64498	1	8283	8283		21.747	0	1				32137	60	20219	20331	30940	30940					0.017177921435177268
STPKVVRQL	9	Unmodified	_STPKVVRQL_					0	0	0			REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-SECPEP	HCT116MG_D190212_S3	3	514.2798461914062	2	514.316566	1026.61858	0.32419	0.00016674	-0.22287	-0.00011463	0.10131	5.2108E-05	514.3162889905368	25.774	0.20842	25.646	25.494	25.702	-0.12795					5	3	2	0	0	0	0.26328	1	9202	9202		1.8442	0	1	1513000	+		32138	12465	20220	20332	30941	30941					0.10633424605566688
STPLAPSEQP	10	Unmodified	_STPLAPSEQP_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1	REV__ENSG00000148400|ENST00000651671|NOTCH1	MULTI-MSMS	HCT116MG_D190212_S3	3	513.7304077148438	2	513.758746	1025.50294	0.30899	0.00015875	-0.25049	-0.00012869	0.058501	3.0055E-05	513.7586473862729	25.596	0.20799	25.468	25.338	25.546	-0.12795					6	3	2	0	0	0	0.69918	1	9101	9101		20.454	0	1	2923700	+		32139	12543	20221	20333	30942	30942					-0.008791440359573244
STPLMWMFMA	10	Unmodified	_STPLMWMFMA_					0	0	0		ENST00000378024.8_2_11:62287553-62287670:-|nuORF	ENST00000378024.8_2_11:62287553-62287670:-|nuORF	ENST00000378024.8_2_11:62287553-62287670:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	607.2097778320312	2	607.773973	1213.53339	0.4903	0.00029799	-0.69852	-0.00042454	-0.20822	-0.00012655	607.7734998839882	14.892	0.67789	14.573	14.14	14.818	-0.31952					23	12	3	0	0	0	0.31123	1	4837	4837		3.5965	3.1382	1	2406700			32140	7536	20222	20334	30943	30943					-0.06483148238407921
STPLPFWSP	9	Unmodified	_STPLPFWSP_					0	0	0		ENST00000488976.5_1_3:183962900-183966721:-|nuORF;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF	ENST00000488976.5_1_3:183962900-183966721:-|nuORF	ENST00000488976.5_1_3:183962900-183966721:-|nuORF	MSMS	HCT116MG_D190212_S3	3	515.9159545898438	2	516.263468	1030.51238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.788	1	14.871	14.371	15.371	0.083271								0	0	0	0.768	1	4788	4788		7.9102	0	1				32141	8057	20223	20335	30944	30944					-0.0016533095977138146
STPLRRITKKF	11	Unmodified	_STPLRRITKKF_					0	0	0		CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant;CHAF1A|p.A486Lfs*24|1|0.09|ENSG00000167670|chr19:4428742-4428742|G/-|frameshift_variant;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A	CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant	CHAF1A|p.K459Rfs*51|1|0.22|ENSG00000167670|chr19:4423867-4423867|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	673.9150390625	2	673.916978	1345.8194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.534	1	37.233	36.733	37.733	-0.30137								0	0	0	0.95636	1	13906	13906		2.9952	0.26005	1				32142	423	20224	20336	30945	30945					0.16032693922170438
STPLYPDFNQG	11	Unmodified	_STPLYPDFNQG_					0	0	0			REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	REV__GLI1|p.N973Ifs*3|1|0.33|ENSG00000111087|chr12:57471655-57471655|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	619.7862548828125	2	619.788035	1237.56152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.754	1	18.573	18.073	19.073	-0.18052								0	0	0	0.93717	1	6316	6316		13.042	2.9685	1		+		32143	11422	20225	20337	30946	30946					-0.04776087461482348
STPMELFQ	8	Unmodified	_STPMELFQ_					0	0	0			REV__ENST00000417037.6_2_3:38182773-38183136:+|nuORF	REV__ENST00000417037.6_2_3:38182773-38183136:+|nuORF	MSMS	HCT116MG_D190212_S4	4	476.7278137207031	2	476.725861	951.437169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.183	1	17.013	16.513	17.513	-0.17047								0	0	0	0.8837	1	5681	5681		8.5933	0.68312	1		+		32144	15483	20226	20338	30947	30947					-0.04049256482505825
STPMEVVDMLN	11	Unmodified	_STPMEVVDMLN_					0	0	0		GUCY2C|p.L1022Sfs*34|1|0.04|ENSG00000070019|chr12:14613274-14613275|-/GCTG|frameshift_variant;ENSG00000070019|ENST00000261170|GUCY2C	GUCY2C|p.L1022Sfs*34|1|0.04|ENSG00000070019|chr12:14613274-14613275|-/GCTG|frameshift_variant	GUCY2C|p.L1022Sfs*34|1|0.04|ENSG00000070019|chr12:14613274-14613275|-/GCTG|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	618.3051147460938	2	618.285956	1234.55736	0.26144	0.00016164	-0.14055	-8.6899E-05	0.12089	7.4743E-05	618.2860884485412	18.042	0.67668	18.119	17.737	18.413	0.076334					22	12	3	0	0	0	0.3312	1	6090	6090		26.268	0	1	8444900			32145	1229	20227	20339	30948	30948					-0.05053636271031792
STPMPLVRNE	10	Unmodified	_STPMPLVRNE_					0	0	0			REV__ENSG00000152503|ENST00000513154|TRIM36	REV__ENSG00000152503|ENST00000513154|TRIM36	MSMS	HCT116MG_D190212_S3	3	572.248046875	2	572.294973	1142.57539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.54	1	23.5	23	24	-0.03968								0	0	0	0.90892	1	8316	8316		13.906	2.4113	1		+		32146	12631	20228	20340	30949	30949					0.009808667659626735
STPMSEAFH	9	Unmodified	_STPMSEAFH_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MSMS	HCT116MG_D190212_S2	2	503.7196044921875	2	503.718567	1005.42258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.927	1	26.575	26.075	27.075	-0.35254								0	0	0	0.76669	1	9762	9762		12.532	1.7076	1				32147	4362	20229	20341	30950	30950					-0.07991328630646422
STPNGQHASP	10	Unmodified	_STPNGQHASP_					0	0	0		nc|ENSG00000030419|Q9UKS7-5|IKZF2;nc|ENSG00000030419|Q9UKS7-3|IKZF2;nc|ENSG00000030419|Q9UKS7-8|IKZF2;nc|ENSG00000030419|Q9UKS7-6|IKZF2;nc|ENSG00000030419|Q9UKS7-4|IKZF2;nc|ENSG00000030419|Q9UKS7-7|IKZF2;nc|ENSG00000030419|Q9UKS7-2|IKZF2;ENSG00000030419|ENST00000434687|IKZF2	nc|ENSG00000030419|Q9UKS7-5|IKZF2	nc|ENSG00000030419|Q9UKS7-5|IKZF2	MULTI-SECPEP	HCT116MG_D190212_S2	2	498.7216491699219	2	498.230687	994.446822	0.36188	0.0001803	-0.0026379	-1.3143E-06	0.35925	0.00017899	498.2306296884477	17.771	0.20885	17.414	17.284	17.493	-0.35647					5	3	2	0	0	0	0.29999	1	6056	6056		8.7454	0	1	4864500			32148	966	20230	20342	30951	30951					-0.0506235215276547
STPNNGYLY	9	Unmodified	_STPNNGYLY_					0	0	0		IFIT3|p.S392Ifs*3|1|0.32|ENSG00000119917|chr10:89339822-89339823|-/A|frameshift_variant;IFIT3|p.L446Kfs*16|1|0.15|ENSG00000119917|chr10:89339991-89339992|CT/-|frameshift_variant;ENSG00000119917|ENST00000371818|IFIT3	IFIT3|p.S392Ifs*3|1|0.32|ENSG00000119917|chr10:89339822-89339823|-/A|frameshift_variant	IFIT3|p.S392Ifs*3|1|0.32|ENSG00000119917|chr10:89339822-89339823|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	514.7357177734375	2	514.737814	1027.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.899	1	16.983	16.483	17.483	0.084467								0	0	0	0.76575	1	5641	5641		15.847	2.8047	1				32149	2673	20231	20343	30952	30952					-0.051556997244460945
STPNSEFNP	9	Unmodified	_STPNSEFNP_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MSMS	HCT116MG_D190212_S4	4	496.721435546875	2	496.719621	991.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.298	1	25.018	24.518	25.518	-0.27958								0	0	0	0.67173	1	8958	8958		20.454	5.6154	1				32150	4539	20232	20344	30953	30953					-0.07136576621189761
STPPATTNFP	10	Unmodified	_STPPATTNFP_					0	0	0		nc|ENSG00000121577|Q9HBU9-2|POPDC2;nc|ENSG00000121577|Q9HBU9|POPDC2;ENSG00000121577|ENST00000493094|POPDC2	nc|ENSG00000121577|Q9HBU9-2|POPDC2	nc|ENSG00000121577|Q9HBU9-2|POPDC2	MSMS	HCT116MG_D190212_S3	3	516.7520751953125	2	516.753464	1031.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.207	1	22.208	21.708	22.708	0.00074577								0	0	0	0.84701	1	7779	7779		22.736	3.4793	1				32151	2734	20233	20345	30954	30954					-0.022111266903721116
STPPDVLSVGP	11	Unmodified	_STPPDVLSVGP_					0	0	0		ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	MULTI-MSMS	HCT116MG_D190212_S4	4	536.16552734375	2	534.782222	1067.54989	0.42064	0.00022495	-0.11219	-5.9999E-05	0.30845	0.00016495	534.7821955116176	19.446	0.71812	19.259	19.077	19.795	-0.18674					44	13	5	0	0	0	0.74191	1	6535	6535		6.2058	1.4498	1	390760000			32152	4947	20234	20346	30955	30955					0.01881715515196447
STPPGGAP	8	Unmodified	_STPPGGAP_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	HCT116MG_D190212_S3	3	683.3355102539062	1	683.335881	682.328604	0.92843	0.00063443	-0.39766	-0.00027174	0.53077	0.00036269	683.3355469745572	19.523	0.52085	19.583	19.281	19.802	0.059828					16	9	2	0	0	0	0.60268	1	6705	6705		32.117	0	1	3847100			32153	5231	20235	20347	30956	30956					-0.02526679670620524
STPPHNSGLD	10	Unmodified	_STPPHNSGLD_					0	0	0			REV__ENST00000482666.5_1_2:233568191-233595879:+|nuORF	REV__ENST00000482666.5_1_2:233568191-233595879:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	512.7382202148438	2	512.738345	1023.46214	0.10947	5.613E-05	-0.21539	-0.00011044	-0.10592	-5.4307E-05	512.7383613118774	16.282	1.2484	16.367	15.769	17.017	0.085424					47	23	3	0	0	0	0.68623	1	5532	5532		21.537	2.175	1	5986800	+		32154	15582	20236	20348	30957	30957					-0.04865485355560395
STPPLCQPLPP	11	Unmodified	_STPPLCQPLPP_					0	0	0			REV__ENST00000216487.11_1_14:93118154-93118406:+|nuORF	REV__ENST00000216487.11_1_14:93118154-93118406:+|nuORF	MSMS	HCT116MG_D190212_S3	3	575.3087768554688	2	575.302267	1148.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.766	1	28.546	28.046	29.046	-0.21986								0	0	0	0.94416	1	10424	10424		9.3831	1.2276	1		+		32155	14511	20237	20349	30958	30958					0.021629389141025968
STPPNYIAP	9	Unmodified	_STPPNYIAP_					0	0	0			REV__nc|ENSG00000172995|Q9UBL0|ARPP21	REV__nc|ENSG00000172995|Q9UBL0|ARPP21	MSMS	HCT116MG_D190212_S4	4	480.24560546875	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.183	1	27.852	27.352	28.352	-0.33138								0	0	0	0.61599	1	10123	10123		23.148	6.2061	1		+		32156	13410	20238	20350	30959	30959					-0.0049020785647826415
STPPPPPPPAP	11	Unmodified	_STPPPPPPPAP_					0	0	0			REV__ENSG00000167771|ENST00000301459|RCOR2	REV__ENSG00000167771|ENST00000301459|RCOR2	MSMS	HCT116MG_D190212_S2	2	527.7154541015625	2	527.782025	1053.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.593	1	17.24	16.74	17.74	-0.35361								0	0	0	0.80071	1	5997	5997		32.786	3.7041	1		+		32157	13167	20239	20351	30960	30960					0.024863405860060084
STPPPPPPTAP	11	Unmodified	_STPPPPPPTAP_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MSMS	HCT116MG_D190212_S4	4	529.7780151367188	2	529.779482	1057.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.222	1	21.012	20.512	21.512	-0.20959								0	0	0	0.91433	1	7313	7313		18.146	3.3081	1		+		32158	17180	20240	20352	30961	30961					0.017940367233677534
STPPPSTKP	9	Unmodified	_STPPPSTKP_					0	0	0			REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	456.3180236816406	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.156	1	18.156	17.656	18.656	0								0	0	0	0.76694	1	6224	6224		11.64	1.4569	1		+		32159	9872	20241	20353	30962	30962					0.017177921435290955
STPPQVRQH	9	Unmodified	_STPPQVRQH_					0	0	0		ENST00000440377.2_1_1:146644377-146644491:+|nuORF	ENST00000440377.2_1_1:146644377-146644491:+|nuORF	ENST00000440377.2_1_1:146644377-146644491:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.4879760742188	2	525.277972	1048.54139	0.35621	0.00018711	0.68112	0.00035778	1.0373	0.00054489	525.2788278581871	18.783	0.20832	18.852	18.719	18.927	0.069159					5	3	2	0	0	0	0.45867	1	6391	6391		19.257	3.4098	1	1022100			32160	7915	20242	20354	30963	30963					0.01906206389230647
STPPRHLAP	9	Unmodified	_STPPRHLAP_					0	0	0			REV__BOC|p.P449H|1|0.59|ENSG00000144857|chr3:113274486-113274486|C/A|missense_variant	REV__BOC|p.P449H|1|0.59|ENSG00000144857|chr3:113274486-113274486|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	488.27008056640625	2	488.272158	974.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.367	1	22.139	21.639	22.639	-0.22777								0	0	0	0.74436	1	7776	7776		16.942	2.104	1		+		32161	10049	20243	20355	30964	30964					0.041480093658947226
STPPRHLAP	9	Unmodified	_STPPRHLAP_					0	0	0			REV__BOC|p.P449H|1|0.59|ENSG00000144857|chr3:113274486-113274486|C/A|missense_variant	REV__BOC|p.P449H|1|0.59|ENSG00000144857|chr3:113274486-113274486|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	488.2701721191406	2	488.272158	974.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.527	1	22.294	21.794	22.794	-0.23274								0	0	0	0.74436	1	7841	7841		16.942	3.4344	1		+		32162	10049	20243	20355	30965	30965					0.041480093658947226
STPPSMPPPPP	11	Unmodified	_STPPSMPPPPP_					0	0	0		nc|ENSG00000129993|O75081-2|CBFA2T3;ENSG00000129993|ENST00000268679|CBFA2T3	nc|ENSG00000129993|O75081-2|CBFA2T3	nc|ENSG00000129993|O75081-2|CBFA2T3	MSMS	HCT116MG_D190212_S3	3	552.7753295898438	2	552.773342	1103.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.507	1	25.401	24.901	25.901	-0.10618								0	0	0	0.91433	1	9109	9109		18.146	3.3081	1				32163	3050	20244	20356	30966	30966					-0.01549323011317938
STPPSPQSGPP	11	Unmodified	_STPPSPQSGPP_					0	0	0		CSDC2|p.P13Rfs*101|1|0.47|ENSG00000172346|chr22:41571999-41571999|C/-|frameshift_variant	CSDC2|p.P13Rfs*101|1|0.47|ENSG00000172346|chr22:41571999-41571999|C/-|frameshift_variant	CSDC2|p.P13Rfs*101|1|0.47|ENSG00000172346|chr22:41571999-41571999|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	526.2569580078125	2	526.256371	1050.49819	0.4012	0.00021114	0.32254	0.00016974	0.72375	0.00038088	526.7581344876644	28.057	0.25985	27.726	27.596	27.856	-0.33138					6	4	2	0	0	0	0.35538	1	10107	10107		18.146	2.2992	1	2526200			32164	604	20245	20357	30967	30967					-0.025040281787141794
STPPTSAVLHP	11	Unmodified	_STPPTSAVLHP_					0	0	0			REV__ENST00000477622.1_1_11:3143079-3147843:-|nuORF	REV__ENST00000477622.1_1_11:3143079-3147843:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7957153320312	2	553.795663	1105.57677	0.27379	0.00015162	0.10767	5.963E-05	0.38146	0.00021125	553.7957042814186	19.335	1.6163	18.966	17.532	19.148	-0.3695					48	30	4	0	0	0	0.65731	1	6567	6567		29.082	9.8246	1	42279000	+		32165	15924	20246	20358	30968	30968					0.028208241263882883
STPPVSTFDW	10	Unmodified	_STPPVSTFDW_					0	0	0		nc|ENSG00000172554|Q9NY99-2|SNTG2;SNTG2|p.S456Kfs*32|1|0.03|ENSG00000172554|chr2:1308575-1308576|-/AAACATTCTTTAATAAT|frameshift_variant;ENSG00000172554|ENST00000308624|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	MULTI-MSMS	HCT116MG_D190212_S3	3	569.26806640625	2	568.766571	1135.51859	0.60256	0.00034271	-1.078	-0.00061315	-0.47548	-0.00027044	568.766125919701	29.763	0.37078	29.526	29.292	29.662	-0.23655					13	6	3	0	0	0	0.71349	1	10832	10832		19.257	2.3147	1	10632000			32166	5253	20247	20359	30969	30969					-0.04374857518905628
STPQCADRLW	10	Unmodified	_STPQCADRLW_					0	0	0		IMPG2|p.S804C|1|0.06|ENSG00000081148|chr3:101243921-101243921|T/A|missense_variant	IMPG2|p.S804C|1|0.06|ENSG00000081148|chr3:101243921-101243921|T/A|missense_variant	IMPG2|p.S804C|1|0.06|ENSG00000081148|chr3:101243921-101243921|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	588.7767944335938	2	588.776948	1175.53934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.185	1	21.957	21.457	22.457	-0.22777								0	0	0	0.83884	1	7703	7703		23.79	8.9515	1				32167	9241	20248	20360	30970	30970					-0.041405904109069525
STPQGLAGFEQ	11	Unmodified	_STPQGLAGFEQ_					0	0	0		ENST00000323078.7_1_7:150020415-150033884:+|nuORF	ENST00000323078.7_1_7:150020415-150033884:+|nuORF	ENST00000323078.7_1_7:150020415-150033884:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	568.2731323242188	2	567.774928	1133.5353	0.54155	0.00030748	-2.5704	-0.0014594	-2.0289	-0.0011519	567.7746767751217	27.523	1.6663	27.335	26.476	28.142	-0.18847					41	31	2	0	0	0	0.70662	1	10082	10082		19.362	0.10495	1	10859000			32168	7115	20249	20361	30971	30971					-0.026123566329715686
STPQLPLPEA	10	Unmodified	_STPQLPLPEA_					0	0	0			REV__nc|ENSG00000126562|Q96J92-3|WNK4	REV__nc|ENSG00000126562|Q96J92-3|WNK4	MSMS	HCT116MG_D190212_S3	3	526.7825317382812	2	526.784764	1051.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.878	1	21.879	21.379	22.379	0.00074577								0	0	0	0.85631	1	7646	7646		21.537	2.28	1		+		32169	11842	20250	20362	30972	30972					0.03126019377805278
STPQPGSPPP	10	Unmodified	_STPQPGSPPP_					0	0	0			REV__ENSG00000166747|ENST00000299980|AP1G1	REV__ENSG00000166747|ENST00000299980|AP1G1	MULTI-MSMS	HCT116MG_D190212_S3	3	482.7406311035156	2	482.740357	963.46616	0.33193	0.00016023	0.01556	7.5114E-06	0.34749	0.00016775	482.7403072140398	29.502	0.99926	29.266	29.031	30.03	-0.23655					29	18	2	0	0	0	0.68372	1	10815	10815		21.747	4.8044	1	34097000	+		32170	13121	20251	20363	30973	30973					-0.017033958618526412
STPQPQPPP	9	Unmodified	_STPQPQPPP_					0	0	0		ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant;ENSG00000052850|ENST00000652299|ALX4	ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant	ALX4|p.P339Lfs*12|4|0.31|ENSG00000052850|chr11:44265074-44265074|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	474.7428894042969	2	474.742899	947.471246	0.30393	0.00014429	-0.20363	-9.6674E-05	0.1003	4.7615E-05	474.7426334540074	25.232	0.46904	25.126	24.787	25.256	-0.10618					14	8	2	0	0	0	0.14972	1	8985	8985		48.346	3.9388	1	6937400			32171	120	20252	20364	30974	30974					-0.004590919992438103
STPQRHPPP	9	Unmodified	_STPQRHPPP_					0	0	0		ENST00000489671.5_2_3:141668120-141668426:-|nuORF	ENST00000489671.5_2_3:141668120-141668426:-|nuORF	ENST00000489671.5_2_3:141668120-141668426:-|nuORF	MSMS	HCT116MG_D190212_S3	3	508.76568603515625	2	508.76724	1015.51993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.017	1	31.739	31.239	32.239	-0.27841								0	0	0	0.61599	1	11719	11719		23.148	1.4018	1				32172	8329	20253	20365	30975	30975					0.012788213605062992
STPQRHPPP	9	Unmodified	_STPQRHPPP_					0	0	0		ENST00000489671.5_2_3:141668120-141668426:-|nuORF	ENST00000489671.5_2_3:141668120-141668426:-|nuORF	ENST00000489671.5_2_3:141668120-141668426:-|nuORF	MSMS	HCT116MG_D190212_S4	4	508.7656555175781	2	508.76724	1015.51993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.399	1	29.05	28.55	29.55	-0.34921								0	0	0	0.74436	1	10615	10615		16.942	3.0362	1				32173	8329	20253	20365	30976	30976					0.012788213605062992
STPQRHPPP	9	Unmodified	_STPQRHPPP_					0	0	0		ENST00000489671.5_2_3:141668120-141668426:-|nuORF	ENST00000489671.5_2_3:141668120-141668426:-|nuORF	ENST00000489671.5_2_3:141668120-141668426:-|nuORF	MSMS	HCT116MG_D190212_S4	4	508.7661437988281	2	508.76724	1015.51993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.202	1	34.816	34.316	35.316	-0.38606								0	0	0	0.71969	1	12884	12884		18.135	0	1				32174	8329	20253	20365	30977	30977					0.012788213605062992
STPQRHPPP	9	Unmodified	_STPQRHPPP_					0	0	0		ENST00000489671.5_2_3:141668120-141668426:-|nuORF	ENST00000489671.5_2_3:141668120-141668426:-|nuORF	ENST00000489671.5_2_3:141668120-141668426:-|nuORF	MSMS	HCT116MG_D190212_S4	4	508.7653503417969	2	508.76724	1015.51993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.129	1	35.744	35.244	36.244	-0.38558								0	0	0	0.58443	1	13210	13210		24.674	2.9272	1				32175	8329	20253	20365	30978	30978					0.012788213605062992
STPQRNFEI	9	Unmodified	_STPQRNFEI_					0	0	0		nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	nc|ENSG00000107745|Q9BPX6-2|MICU1	MSMS	HCT116MG_D190212_S2	2	546.2774047851562	2	546.277638	1090.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.623	1	25.254	24.754	25.754	-0.36914								0	0	0	0.76739	1	9235	9235		10.074	0.6908	1				32176	2127	20254	20366	30979	30979					-0.0009263305048534676
STPQRSLWD	9	Unmodified	_STPQRSLWD_					0	0	0		FOXD4L3|p.R18W|1|0.23|ENSG00000187559|chr9:68303003-68303003|C/T|missense_variant	FOXD4L3|p.R18W|1|0.23|ENSG00000187559|chr9:68303003-68303003|C/T|missense_variant	FOXD4L3|p.R18W|1|0.23|ENSG00000187559|chr9:68303003-68303003|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	545.2697143554688	2	545.269813	1088.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.799	1	22.562	22.062	23.062	-0.23758								0	0	0	0.76575	1	7951	7951		15.847	1.0089	1				32177	9163	20255	20367	30980	30980					-0.015649195675223382
STPRAQPP	8	Unmodified	_STPRAQPP_					0	0	0		ENST00000436092.1_1_3:9791892-9792424:+|nuORF	ENST00000436092.1_1_3:9791892-9792424:+|nuORF	ENST00000436092.1_1_3:9791892-9792424:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	427.22991943359375	2	427.229959	852.445365	0.20919	8.9373E-05	-0.12151	-5.1911E-05	0.087685	3.7462E-05	427.22981363006164	22.037	0.9865	21.81	21.157	22.143	-0.22777					50	18	4	0	0	0	0.55794	1	7705	7705		36.044	1.9418	1	33929000			32178	7883	20256	20368	30981	30981					0.013240585491303136
STPRDLDYSR	10	Unmodified	_STPRDLDYSR_					0	0	0		nc|ENSG00000119508|Q92570-2|NR4A3;NR4A3|p.R554Efs*13|1|0.12|ENSG00000119508|chr9:99863646-99863646|A/-|frameshift_variant;ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	605.296875	2	605.296559	1208.57856	0.48638	0.00029441	-0.093653	-5.6688E-05	0.39273	0.00023772	605.2966117754604	31.684	0.57335	31.414	31.117	31.69	-0.27028					23	10	3	0	0	0	0.7974	1	11587	11587		12.241	12.241	1	6969300			32179	2645	20257	20369	30982	30982					-0.017381668556936347
STPRDLDYSR	10	Unmodified	_STPRDLDYSR_					0	0	0		nc|ENSG00000119508|Q92570-2|NR4A3;NR4A3|p.R554Efs*13|1|0.12|ENSG00000119508|chr9:99863646-99863646|A/-|frameshift_variant;ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	605.798095703125	2	605.296559	1208.57856	0.67632	0.00040938	-0.28738	-0.00017395	0.38895	0.00023543	605.2964197812533	32.715	0.57317	32.43	31.987	32.56	-0.28511					17	10	2	0	0	0	0.83158	2	11997	11997;12018		9.3831	0.63772	1	3606300			32180	2645	20257	20369	30983;30984	30983					-0.017381668556936347
STPRDLDYSR	10	Unmodified	_STPRDLDYSR_					0	0	0		nc|ENSG00000119508|Q92570-2|NR4A3;NR4A3|p.R554Efs*13|1|0.12|ENSG00000119508|chr9:99863646-99863646|A/-|frameshift_variant;ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	MULTI-MSMS	HCT116MG_D190212_S4	4	605.2969360351562	2	605.296559	1208.57856	1.008	0.00061011	-0.35752	-0.00021641	0.65043	0.0003937	605.2962992011217	31.712	0.67509	31.338	31.072	31.747	-0.37338					26	12	3	0	0	0	0.7974	1	11493	11493		12.241	3.4953	1	8913200			32181	2645	20257	20369	30985	30985					-0.017381668556936347
STPRDLDYSR	10	Unmodified	_STPRDLDYSR_					0	0	0		nc|ENSG00000119508|Q92570-2|NR4A3;NR4A3|p.R554Efs*13|1|0.12|ENSG00000119508|chr9:99863646-99863646|A/-|frameshift_variant;ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	605.296559	1208.57856	0.48638	0.00029441	-0.093653	-5.6688E-05	0.39273	0.00023772	605.2966117754604	31.684	0.57335	31.414	31.117	31.69	-0.27028	0.037629	0.00020759	NaN	12.241	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6969300			32182	2645	20257	20369							-0.017381668556936347
STPRDLDYSR	10	Unmodified	_STPRDLDYSR_					0	0	0		nc|ENSG00000119508|Q92570-2|NR4A3;NR4A3|p.R554Efs*13|1|0.12|ENSG00000119508|chr9:99863646-99863646|A/-|frameshift_variant;ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	nc|ENSG00000119508|Q92570-2|NR4A3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	605.296559	1208.57856	1.008	0.00061011	-0.35752	-0.00021641	0.65043	0.0003937	605.2962992011217	31.712	0.67509	31.338	31.072	31.747	-0.37338	-0.037629	-0.00011186	NaN	12.241	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8913200			32183	2645	20257	20369							-0.017381668556936347
STPREMKSSP	10	Unmodified	_STPREMKSSP_					0	0	0		ENST00000398333.7_3_15:90451538-90454016:-|nuORF	ENST00000398333.7_3_15:90451538-90454016:-|nuORF	ENST00000398333.7_3_15:90451538-90454016:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	373.8535461425781	3	373.853612	1118.53901	-0.091039	-3.4035E-05	0.02729	1.0202E-05	-0.06375	-2.3833E-05	373.8535217324216	18.728	0.26028	18.797	18.667	18.927	0.069159					6	4	2	0	0	0	0.28904	1	6411	6411		15.739	2.866	1	1589400			32184	7683	20258	20370	30986	30986					-0.015520101307174627
STPRLPAAP	9	Unmodified	_STPRLPAAP_					0	0	0			REV__ENSG00000235608|ENST00000422806|NKX1-1	REV__ENSG00000235608|ENST00000422806|NKX1-1	MULTI-MSMS	HCT116MG_D190212_S4	4	455.26129150390625	2	455.261259	908.507966	0.1526	6.9471E-05	0.12297	5.5983E-05	0.27557	0.00012545	455.2613080919137	18.458	0.20798	18.278	18.199	18.407	-0.18052					6	3	2	0	0	0	0.1754	1	6227	6227		43.858	3.901	1	1030600	+		32185	14332	20259	20371	30987	30987					0.050052046173163944
STPRLSSGAA	10	Unmodified	_STPRLSSGAA_					0	0	0			REV__ENST00000457962.5_1_2:208031798-208031951:-|nuORF	REV__ENST00000457962.5_1_2:208031798-208031951:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	473.7511901855469	2	473.751256	945.487959	0.29584	0.00014015	-0.41803	-0.00019804	-0.12219	-5.7887E-05	473.7509973080361	22.495	0.20775	22.267	22.143	22.351	-0.22777					5	3	2	0	0	0	0.57664	1	7838	7838		29.841	2.9569	1	2818700	+		32186	15764	20260	20372	30988	30988					0.013034088867129867
STPRMPWHD	9	Unmodified	_STPRMPWHD_					0	0	0		ENST00000471075.1_1_3:171371881-171395443:-|nuORF;nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1	ENST00000471075.1_1_3:171371881-171395443:-|nuORF	ENST00000471075.1_1_3:171371881-171395443:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	563.7608032226562	2	563.758558	1125.50256	-0.25421	-0.00014332	2.3054	0.0012997	2.0511	0.0011563	564.2606059400862	16.671	0.25612	16.504	16.351	16.608	-0.16664					6	4	2	0	0	0	0.53593	1	5500	5500		14.838	1.3304	1	465010			32187	8152	20261	20373	30989	30989					-0.05516842236784214
STPRVHAKV	9	Unmodified	_STPRVHAKV_					0	0	0		nc|ENSG00000145979|Q9P0N9-3|TBC1D7	nc|ENSG00000145979|Q9P0N9-3|TBC1D7	nc|ENSG00000145979|Q9P0N9-3|TBC1D7	MULTI-MSMS	HCT116MG_D190212_S1	1	497.7933349609375	2	497.793258	993.571963	0.58337	0.0002904	-0.49481	-0.00024632	0.088557	4.4083E-05	497.79289183020984	17.385	0.15664	17.385	17.307	17.463	0					4	2	2	0	0	0	0.51301	1	5944	5944		16.149	3.9084	1	1944000			32188	9491	20262	20374	30990	30990					0.07491984774276261
STPRVHAKV	9	Unmodified	_STPRVHAKV_					0	0	0		nc|ENSG00000145979|Q9P0N9-3|TBC1D7	nc|ENSG00000145979|Q9P0N9-3|TBC1D7	nc|ENSG00000145979|Q9P0N9-3|TBC1D7	MULTI-MSMS	HCT116MG_D190212_S2	2	497.79315185546875	2	497.793258	993.571963	0.16558	8.2427E-05	0.29473	0.00014672	0.46032	0.00022914	497.79318307131825	18.241	0.20884	17.884	17.754	17.963	-0.35647					5	3	2	0	0	0	0.47413	1	6287	6287		18.373	0.23811	1	13801000			32189	9491	20262	20374	30991	30991					0.07491984774276261
STPSFSPLMWL	11	Unmodified	_STPSFSPLMWL_					0	0	0			REV__ENST00000494399.5_1_1:45478943-45479284:+|nuORF	REV__ENST00000494399.5_1_1:45478943-45479284:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	633.7839965820312	2	633.315374	1264.6162	0.57396	0.0003635	0.04154	2.6308E-05	0.6155	0.00038981	633.3153532947523	25.395	1.093	25.289	24.527	25.62	-0.10618					29	20	2	0	0	0	0.73536	1	9102	9102		8.7454	0	1	2614800	+		32190	16076	20263	20375	30992	30992					-0.005527919143787585
STPSGSPEP	9	Unmodified	_STPSGSPEP_					0	0	0			REV__FAM124B|p.D307Y|1|0.25|ENSG00000124019|chr2:224380022-224380022|C/A|missense_variant	REV__FAM124B|p.D307Y|1|0.25|ENSG00000124019|chr2:224380022-224380022|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	429.6950988769531	2	429.695615	857.376677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.249	1	17.334	16.834	17.834	0.084467								0	0	0	0.76818	1	5782	5782		7.2892	0	1		+		32191	11775	20264	20376	30993	30993					-0.0577165054123725
STPSHGSPSP	10	Unmodified	_STPSHGSPSP_					0	0	0		ENST00000568665.1_1_9:140063308-140066381:-|nuORF	ENST00000568665.1_1_9:140063308-140066381:-|nuORF	ENST00000568665.1_1_9:140063308-140066381:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	477.22003173828125	2	477.219788	952.425024	-0.04876	-2.3269E-05	-0.23222	-0.00011082	-0.28098	-0.00013409	477.21956644784655	17.738	0.46843	17.82	17.534	18.002	0.081358					10	8	2	0	0	0	0.76634	1	6012	6012		14.838	0.43289	1	2484900			32192	8874	20265	20377	30994	30994					-0.053091569013190565
STPSHGSPSP	10	Unmodified	_STPSHGSPSP_					0	0	0		ENST00000568665.1_1_9:140063308-140066381:-|nuORF	ENST00000568665.1_1_9:140063308-140066381:-|nuORF	ENST00000568665.1_1_9:140063308-140066381:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	477.219788	952.425024	-0.04876	-2.3269E-05	-0.23222	-0.00011082	-0.28098	-0.00013409	477.21956644784655	17.738	0.46843	17.82	17.534	18.002	0.081358	0	0	NaN	14.838	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2484900			32193	8874	20265	20377							-0.053091569013190565
STPSPPEDPDC	11	Unmodified	_STPSPPEDPDC_					0	0	0		ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	MSMS	HCT116MG_D190212_S3	3	572.728271484375	2	572.726786	1143.43902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.749	1	20.783	20.283	21.283	0.034473								0	0	0	0.93717	1	7194	7194		13.042	4.2971	1				32194	1374	20266	20378	30995	30995					-0.12696292255213848
STPSPPVS	8	Unmodified	_STPSPPVS_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-MSMS	HCT116MG_D190212_S3	3	772.384521484375	1	771.38831	770.381034	0.48482	0.00037399	-1.849	-0.0014263	-1.3642	-0.0010523	771.3881656423481	34.556	0.93591	34.259	33.764	34.7	-0.29707					24	17	2	0	0	0	0.53394	1	12700	12700		38.151	6.0342	1	8749200	+		32195	12856	20267	20379	30996	30996					-0.01334141327663474
STPSPPVS	8	Unmodified	_STPSPPVS_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-MSMS	HCT116MG_D190212_S4	4	772.384765625	1	771.38831	770.381034	0.79286	0.0006116	-2.7017	-0.0020841	-1.9088	-0.0014725	771.3877811796478	34.63	0.81885	34.245	33.724	34.543	-0.38558					24	15	2	0	0	0	0.60268	1	12607	12607		32.117	3.9437	1	6033200	+		32196	12856	20267	20379	30997	30997					-0.01334141327663474
STPSPQAWRM	10	Unmodified	_STPSPQAWRM_					0	0	0			REV__ENST00000368489.3_1_1:154315281-154315774:+|nuORF	REV__ENST00000368489.3_1_1:154315281-154315774:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	580.8001708984375	2	580.77949	1159.54443	0.15533	9.021E-05	1.8354	0.001066	1.9908	0.0011562	580.7811021594492	18.786	0.20788	18.606	18.511	18.719	-0.18052					5	3	2	0	0	0	0.82332	1	6296	6296		10.074	1.3285	1	1442400	+		32197	15133	20268	20380	30998	30998					-0.028962865482981215
STPSPWTY	8	Unmodified	_STPSPWTY_					0	0	0			REV__ENSG00000182854|ENST00000332238|OR4F15	REV__ENSG00000182854|ENST00000332238|OR4F15	MSMS	HCT116MG_D190212_S4	4	469.7147521972656	2	469.71635	937.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.209	1	17.039	16.539	17.539	-0.17047								0	0	0	0.77419	1	5692	5692		24.674	5.2349	1		+		32198	13731	20269	20381	30999	30999					-0.05306469781908163
STPSSLVYT	9	Unmodified	_STPSSLVYT_					0	0	0		RBFOX1|p.A243T|1|0.17|ENSG00000078328|chr16:7630653-7630653|G/A|missense_variant	RBFOX1|p.A243T|1|0.17|ENSG00000078328|chr16:7630653-7630653|G/A|missense_variant	RBFOX1|p.A243T|1|0.17|ENSG00000078328|chr16:7630653-7630653|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	477.7332458496094	2	477.742565	953.470577	0.19246	9.1945E-05	-0.39413	-0.00018829	-0.20167	-9.6348E-05	477.74254366155265	34.137	0.15653	34.137	34.024	34.181	0					4	2	2	0	0	0	0.51829	1	12632	12632		15.847	0	1	2520800			32199	9806	20270	20382	31000	31000					-0.008019314389571264
STPSTFEWLRS	11	Unmodified	_STPSTFEWLRS_					0	0	0			REV__ENST00000478188.5_1_4:57883363-57883849:+|nuORF	REV__ENST00000478188.5_1_4:57883363-57883849:+|nuORF	MSMS	HCT116MG_D190212_S4	4	655.82470703125	2	655.822409	1309.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.9	1	22.663	22.163	23.163	-0.23758								0	0	0	0.93717	1	7991	7991		13.042	0.80181	1		+		32200	15931	20271	20383	31001	31001					-0.012164231617816768
STPSYYVDTM	10	Unmodified	_STPSYYVDTM_					0	0	0			REV__ENSG00000173706|ENST00000311127|HEG1	REV__ENSG00000173706|ENST00000311127|HEG1	MSMS	HCT116MG_D190212_S4	4	581.8026733398438	2	582.249897	1162.48524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.25	1	19.063	18.563	19.563	-0.18674								0	0	0	0.83705	1	6516	6516		24.021	1.2843	1		+		32201	13450	20272	20384	31002	31002					-0.08950227353147966
STPTGSASRPT	11	Unmodified	_STPTGSASRPT_					0	0	0			REV__ENST00000378712.5_1_1:1551409-1560182:+|nuORF	REV__ENST00000378712.5_1_1:1551409-1560182:+|nuORF	MSMS	HCT116MG_D190212_S4	4	531.2645263671875	2	531.264727	1060.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.35	1	34.964	34.464	35.464	-0.38606								0	0	0	0.94012	1	12944	12944		11.495	0.67078	1		+		32202	15251	20273	20385	31003	31003					-0.012935272927734331
STPTIIESWLR	11	Unmodified	_STPTIIESWLR_					0	0	0		ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.T943Pfs*5|1|0.19|ENSG00000197943|chr16:81934513-81934513|A/-|frameshift_variant;ENSG00000197943|ENST00000564138|PLCG2;ENST00000565020.1_1_16:81891845-81892769:+|nuORF;PLCG2|p.K208Nfs*55|2|0.47|ENSG00000197943|chr16:81870906-81870906|A/-|frameshift_variant;PLCG2|p.S445Qfs*12|1|0.36|ENSG00000197943|chr16:81900747-81900748|-/C|frameshift_variant	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	MSMS	HCT116MG_D190212_S4	4	434.9056396484375	3	434.906594	1301.69795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.772	1	16.606	16.106	17.106	-0.16664								0	0	0	0.95705	1	5515	5515		2.6312	0	1				32203	6188	20274	20386	31004	31004					0.059170267690660694
STPTLIELFY	10	Unmodified	_STPTLIELFY_					0	0	0		nc|ENSG00000172766|Q6N069-4|NAA16;nc|ENSG00000172766|Q6N069-3|NAA16;nc|ENSG00000172766|Q6N069-2|NAA16;NAA16|p.R628Ifs*4|1|0.06|ENSG00000172766|chr13:41369218-41369219|-/TTCT|frameshift_variant;ENSG00000172766|ENST00000379406|NAA16	nc|ENSG00000172766|Q6N069-4|NAA16	nc|ENSG00000172766|Q6N069-4|NAA16	MSMS	HCT116MG_D190212_S4	4	592.318115234375	2	592.315897	1182.61724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.947	1	34.561	34.061	35.061	-0.38606								0	0	0	0.95351	1	12781	12781		3.9444	0.66309	1				32204	5261	20275	20387	31005	31005					0.03323745726152083
STPVPYERQ	9	Unmodified	_STPVPYERQ_					0	0	0			REV__MSC|p.A25T|1|0.23|ENSG00000178860|chr8:71844106-71844106|C/T|missense_variant	REV__MSC|p.A25T|1|0.23|ENSG00000178860|chr8:71844106-71844106|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	538.7728881835938	2	538.772188	1075.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.448	1	33.158	32.658	33.658	-0.29013								0	0	0	0.76718	1	12276	12276		10.824	1.4408	1		+		32205	17035	20276	20388	31006	31006					-0.0049203542478153395
STPVQPRDSSF	11	Unmodified	_STPVQPRDSSF_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S3	3	610.79931640625	2	610.798934	1219.58332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.733	1	24.649	24.149	25.149	-0.083694								0	0	0	0.9387	1	8797	8797		12.241	0.74595	1		+		32206	13681	20277	20389	31007	31007					-0.0176928271291672
STPVQPRDSSF	11	Unmodified	_STPVQPRDSSF_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	HCT116MG_D190212_S4	4	610.7996215820312	2	610.798934	1219.58332	1.0234	0.00062509	0.032677	1.9959E-05	1.0561	0.00064504	611.3005097258996	24.771	0.20747	24.502	24.393	24.601	-0.26881					5	3	2	0	0	0	0.7259	1	8772	8772		12.241	3.4953	1	2159400	+		32207	13681	20277	20389	31008	31008					-0.0176928271291672
STPWMTGVQP	10	Unmodified	_STPWMTGVQP_					0	0	0		FOXP4|p.K267Rfs*100|2|0.24|ENSG00000137166|chr6:41587433-41587433|C/-|frameshift_variant	FOXP4|p.K267Rfs*100|2|0.24|ENSG00000137166|chr6:41587433-41587433|C/-|frameshift_variant	FOXP4|p.K267Rfs*100|2|0.24|ENSG00000137166|chr6:41587433-41587433|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	552.7656860351562	2	552.263142	1102.51173	0.46188	0.00025508	0.14208	7.8466E-05	0.60396	0.00033354	552.2632771565593	34.771	1.1791	34.385	33.827	35.006	-0.38605					34	22	2	0	0	0	0.8392	1	12593	12593		8.7454	0.83525	1	5300400			32208	9165	20278	20390	31009	31009					-0.035424936711251576
STPWRMMFQ	9	Unmodified	_STPWRMMFQ_					0	0	0			REV__ENST00000329138.8_1_17:79654057-79654111:+|nuORF	REV__ENST00000329138.8_1_17:79654057-79654111:+|nuORF	MSMS	HCT116MG_D190212_S4	4	592.2395629882812	2	592.272986	1182.53142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.477	1	16.312	15.812	16.812	-0.16557								0	0	0	0.76818	1	5396	5396		7.2892	0.56607	1		+		32209	14921	20279	20391	31010	31010					-0.052544409320262275
STPWVTRP	8	Unmodified	_STPWVTRP_					0	0	0		ENST00000468221.5_1_2:219246767-219246929:+|nuORF	ENST00000468221.5_1_2:219246767-219246929:+|nuORF	ENST00000468221.5_1_2:219246767-219246929:+|nuORF	MSMS	HCT116MG_D190212_S3	3	472.25390625	2	472.253434	942.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.536	1	20.57	20.07	21.07	0.034473								0	0	0	0.8396	1	7108	7108		19.439	0.18201	1				32210	8126	20280	20392	31011	31011					0.018769181002653568
STPYINGPQ	9	Unmodified	_STPYINGPQ_					0	0	0			REV__PRKCH|p.S317Y|1|0.12|ENSG00000027075|chr14:61453343-61453343|C/A|missense_variant	REV__PRKCH|p.S317Y|1|0.12|ENSG00000027075|chr14:61453343-61453343|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	488.7408752441406	2	488.740357	975.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.605	1	29.255	28.755	29.755	-0.34921								0	0	0	0.76655	1	10698	10698		13.042	2.9685	1		+		32211	17441	20281	20393	31012	31012					-0.022553958618573233
STPYLIHP	8	Unmodified	_STPYLIHP_					0	0	0			REV__ENSG00000243232|ENST00000289269|PCDHAC2	REV__ENSG00000243232|ENST00000289269|PCDHAC2	MSMS	HCT116MG_D190212_S4	4	464.2490539550781	2	464.25036	926.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.511	1	22.281	21.781	22.781	-0.22964								0	0	0	0.8837	1	7834	7834		5.7604	1.4312	1		+		32212	14361	20282	20394	31013	31013					0.01998399868762135
STQAVVSAVSA	11	Unmodified	_STQAVVSAVSA_					0	0	0		ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	MULTI-MSMS	HCT116MG_D190212_S1	1	510.2721862792969	2	510.272021	1018.52949	0.33771	0.00017232	0.11523	5.8797E-05	0.45293	0.00023112	510.2720375084251	16.464	0.15616	16.464	16.369	16.525	0					4	2	2	0	0	0	0.71776	1	5562	5562		15.248	1.3424	1	2816500			32213	1610	20283	20395	31014	31014					0.020965448553738497
STQDHIFKVK	10	Unmodified	_STQDHIFKVK_					0	0	0			REV__ENSG00000100075|ENST00000215882|SLC25A1	REV__ENSG00000100075|ENST00000215882|SLC25A1	MSMS	HCT116MG_D190212_S3	3	601.83203125	2	601.830037	1201.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.975	1	38.674	38.174	39.174	-0.30137								0	0	0	0.91638	1	14456	14456		12.241	3.4953	1		+		32214	11064	20284	20396	31015	31015					0.05276488426056858
STQEPLERAV	10	Unmodified	_STQEPLERAV_					0	0	0		nc|ENSG00000204053|P12525|MYCLP1	nc|ENSG00000204053|P12525|MYCLP1	nc|ENSG00000204053|P12525|MYCLP1	MULTI-MSMS	HCT116MG_D190212_S4	4	565.2957153320312	2	565.296027	1128.5775	0.62657	0.0003542	-0.2931	-0.00016569	0.33347	0.00018851	565.2957653849464	33.592	0.22253	33.208	33.088	33.311	-0.38427					7	4	2	0	0	0	0.45751	1	12244	12244		38.176	1.6694	1	3824700			32215	9608	20285	20397	31016	31016					0.01835618775430703
STQEREREKEP	11	Unmodified	_STQEREREKEP_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;nc|ENSG00000125676|Q8NI27-2|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MSMS	HCT116MG_D190212_S4	4	463.56280517578125	3	463.563667	1387.66917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.631	1	23.383	22.883	23.883	-0.24775								0	0	0	0.95705	1	8284	8284		2.6312	0	1				32216	2898	20286	20398	31017	31017					-0.009157425980447442
STQFLTAAP	9	Unmodified	_STQFLTAAP_					0	0	0			REV__ZNF385D|p.T359I|1|0.32|ENSG00000151789|chr3:21421326-21421326|G/A|missense_variant	REV__ZNF385D|p.T359I|1|0.32|ENSG00000151789|chr3:21421326-21421326|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	468.2436828613281	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.69	1	29.341	28.841	29.841	-0.34921								0	0	0	0.76781	1	10732	10732		8.5933	0	1		+		32217	12613	20287	20399	31018	31018					0.006137921435083626
STQFMTTGP	9	Unmodified	_STQFMTTGP_					0	0	0			REV__nc|ENSG00000102908|O94916-2|NFAT5	REV__nc|ENSG00000102908|O94916-2|NFAT5	MSMS	HCT116MG_D190212_S3	3	485.2212829589844	2	485.220943	968.427332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.365	1	35.066	34.566	35.566	-0.29922								0	0	0	0.76641	1	13051	13051		13.508	0	1		+		32218	11168	20288	20400	31019	31019					-0.05814444487873516
STQILFFSRT	10	Unmodified	_STQILFFSRT_					0	0	0		ENST00000346166.7_1_13:26787887-26787959:-|nuORF	ENST00000346166.7_1_13:26787887-26787959:-|nuORF	ENST00000346166.7_1_13:26787887-26787959:-|nuORF	MSMS	HCT116MG_D190212_S3	3	600.3226928710938	2	600.324588	1198.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.123	1	36.821	36.321	37.321	-0.30137								0	0	0	0.92607	1	13740	13740		10.074	1.3285	1				32219	7260	20289	20401	31020	31020					0.043250860517900946
STQKFSTNP	9	Unmodified	_STQKFSTNP_					0	0	0			REV__ENST00000416301.5_1_10:97636330-97849049:-|nuORF	REV__ENST00000416301.5_1_10:97636330-97849049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	505.74871826171875	2	505.251089	1008.48762	0.26895	0.00013589	-1.9263	-0.00097327	-1.6573	-0.00083738	505.2511749332321	25.172	1.0972	25.172	24.882	25.98	0					59	20	4	0	0	0	0.37539	1	9148	9148		24.021	5.8742	1	126410000	+		32220	15475	20290	20402	31021	31021					-0.016280108331329757
STQKFSTNP	9	Unmodified	_STQKFSTNP_					0	0	0			REV__ENST00000416301.5_1_10:97636330-97849049:-|nuORF	REV__ENST00000416301.5_1_10:97636330-97849049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	505.7486877441406	2	505.251089	1008.48762	0.32131	0.00016234	-2.0436	-0.0010325	-1.7223	-0.0008702	505.2511114632883	25.574	1.0928	25.294	25.058	26.15	-0.27997					60	20	4	0	0	0	0.23138	1	9259	9259		37.974	13.953	1	150640000	+		32221	15475	20290	20402	31022	31022					-0.016280108331329757
STQLRNHISV	10	Unmodified	_STQLRNHISV_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	HCT116MG_D190212_S3	3	577.8175048828125	2	577.817461	1153.62037	0.63554	0.00036722	-0.16231	-9.3783E-05	0.47323	0.00027344	577.8172919179335	28.575	0.36434	28.369	28.229	28.593	-0.20593					9	6	2	0	0	0	0.64492	1	10382	10382		24.991	0	1	2624100	+		32222	11694	20291	20403	31023	31023					0.04970433623498138
STQLRNHISV	10	Unmodified	_STQLRNHISV_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	HCT116MG_D190212_S4	4	577.8177490234375	2	577.817461	1153.62037	0.31719	0.00018328	0.20055	0.00011588	0.51775	0.00029916	577.8174557997224	28.781	0.36335	28.44	28.263	28.626	-0.34059					10	6	2	0	0	0	0.67282	1	10375	10375		22.658	0	1	2569400	+		32223	11694	20291	20403	31024	31024					0.04970433623498138
STQLRNHISV	10	Unmodified	_STQLRNHISV_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	577.817461	1153.62037	0.63554	0.00036722	-0.16231	-9.3783E-05	0.47323	0.00027344	577.8172919179335	28.575	0.36434	28.369	28.229	28.593	-0.20593	-0.035888	-0.00023842	NaN	24.991	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2624100	+		32224	11694	20291	20403							0.04970433623498138
STQLRNHISV	10	Unmodified	_STQLRNHISV_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	577.817461	1153.62037	0.31719	0.00018328	0.20055	0.00011588	0.51775	0.00029916	577.8174557997224	28.781	0.36335	28.44	28.263	28.626	-0.34059	0.035888	0.00018091	NaN	24.991	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2569400	+		32225	11694	20291	20403							0.04970433623498138
STQPHNNLSSS	11	Unmodified	_STQPHNNLSSS_					0	0	0			REV__nc|ENSG00000140577|Q6UUV7-3|CRTC3	REV__nc|ENSG00000140577|Q6UUV7-3|CRTC3	MSMS	HCT116MG_D190212_S3	3	586.2709350585938	2	586.270541	1170.52653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.002	1	25.874	25.374	26.374	-0.12795								0	0	0	0.94012	1	9309	9309		11.495	0	1		+		32226	12305	20292	20404	31025	31025					-0.051913302694401864
STQPLHFMPC	10	Unmodified	_STQPLHFMPC_					0	0	0		nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G;PIK3C2G|p.I437Yfs*5|1|0.42|ENSG00000139144|chr12:18338456-18338456|A/-|frameshift_variant;PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	nc|ENSG00000139144|O75747-2|PIK3C2G	nc|ENSG00000139144|O75747-2|PIK3C2G	MSMS	HCT116MG_D190212_S3	3	580.9462890625	2	580.764994	1159.51544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.96	1	15.043	14.543	15.543	0.083271								0	0	0	0.95351	1	4858	4858		3.9444	0.66309	1				32227	3600	20293	20405	31026	31026					-0.057941471689218815
STQPWGPVLLC	11	Unmodified	_STQPWGPVLLC_					0	0	0			REV__ENST00000360578.6_1_5:662251-662785:-|nuORF	REV__ENST00000360578.6_1_5:662251-662785:-|nuORF	MSMS	HCT116MG_D190212_S3	3	600.80908203125	2	600.807716	1199.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.026	1	15.109	14.609	15.609	0.083271								0	0	0	0.95686	1	4885	4885		2.7352	0.23671	1		+		32228	15082	20294	20406	31027	31027					0.009063412883961064
STQSKTMPP	9	Unmodified	_STQSKTMPP_					0	0	0		ENSG00000283039|ENST00000634670|KLF18	ENSG00000283039|ENST00000634670|KLF18	ENSG00000283039|ENST00000634670|KLF18	MULTI-MSMS	HCT116MG_D190212_S2	2	488.7424011230469	2	488.742042	975.469531	0.22844	0.00011165	0.35584	0.00017391	0.58428	0.00028556	488.7419717299331	19.647	0.36391	19.272	19.039	19.403	-0.37503					10	6	2	0	0	0	0.33687	1	6855	6855		26.884	4.1474	1	4699400			32229	6700	20295	20407	31028	31028					-0.019184690795100323
STQVAYEREQ	10	Unmodified	_STQVAYEREQ_					0	0	0			REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant	REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	605.7894897460938	2	605.788566	1209.56258	0.57342	0.00034737	0.40881	0.00024765	0.98223	0.00059502	606.2902370107798	14.906	0.72794	14.989	14.726	15.454	0.083271					21	13	3	0	0	0	0.72406	1	4787	4787		18.373	0.93045	1	1307700	+		32230	9883	20296	20408	31029	31029					-0.03381873092553178
STQVAYEREQ	10	Unmodified	_STQVAYEREQ_					0	0	0			REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant	REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	605.7888793945312	2	605.788566	1209.56258	0.43936	0.00026616	0.17426	0.00010557	0.61362	0.00037172	605.7885170354648	14.938	0.71935	14.777	14.544	15.264	-0.16089					20	14	2	0	0	0	0.71224	1	4752	4752		19.362	0	1	1120900	+		32231	9883	20296	20408	31030	31030					-0.03381873092553178
STQVAYEREQ	10	Unmodified	_STQVAYEREQ_					0	0	0			REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant	REV__AGBL1|p.M908Nfs*57|1|0.3|ENSG00000273540|chr15:86554401-86554402|-/A|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	605.788566	1209.56258	0.57342	0.00034737	0.40881	0.00024765	0.98223	0.00059502	606.2902370107798	14.906	0.72794	14.989	14.726	15.454	0.083271	0.10595	0.00015733	NaN	19.362	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1307700	+		32232	9883	20296	20408							-0.03381873092553178
STQWFERTLDD	11	Unmodified	_STQWFERTLDD_					0	0	0		tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	tr|U7SP94|U7SP94_FUSNUAdenylosuccinatelyaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01775PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	699.4244384765625	2	699.320231	1396.62591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.363	1	38.062	37.562	38.562	-0.30137								0	0	0	0.95686	1	14209	14209		2.7352	0	1				32233	18378	20297	20409	31031	31031					-0.05653932375344084
STRAHSSLSV	10	Unmodified	_STRAHSSLSV_					0	0	0		ENST00000379520.7_1_2:30382223-30382295:+|nuORF	ENST00000379520.7_1_2:30382223-30382295:+|nuORF	ENST00000379520.7_1_2:30382223-30382295:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.2238159179688	2	522.775262	1043.53597	0.32499	0.0001699	0.05357	2.8005E-05	0.37856	0.0001979	522.7752734367645	17.928	0.20905	17.571	17.441	17.65	-0.35647					5	3	2	0	0	0	0.27975	1	6126	6126		13.615	0	1	5866300			32234	7553	20298	20410	31032	31032					0.01594482806740416
STRALTPLPP	10	Unmodified	_STRALTPLPP_					0	0	0		nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	MULTI-MSMS	HCT116MG_D190212_S3	3	526.808349609375	2	526.808574	1051.60259	0.52094	0.00027444	-0.25866	-0.00013626	0.26228	0.00013817	526.8084382110095	29.718	1.4155	29.481	28.667	30.082	-0.23655					48	26	2	0	0	0	0.40515	2	11045	10582;11045		41.84	0	1	6805600			32235	9600	20299	20411	31033;31034	31034					0.07885718368652306
STRALTPLPP	10	Unmodified	_STRALTPLPP_					0	0	0		nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	MULTI-MSMS	HCT116MG_D190212_S3	3	526.8087158203125	2	526.808574	1051.60259	0.32748	0.00017252	-0.26644	-0.00014036	0.061041	3.2157E-05	526.8084807957925	30.772	1.4082	30.512	30.239	31.648	-0.26071					48	30	2	0	0	0	0.40515	1	11577	11577		41.84	0	1	5818800			32236	9600	20299	20411	31035	31035					0.07885718368652306
STRDDESNVHA	11	Unmodified	_STRDDESNVHA_					0	0	0			REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant	REV__ANKRD50|p.N1088Mfs*6|1|0.42|ENSG00000151458|chr4:124670014-124670014|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	615.3065185546875	2	615.770905	1229.52726	0.38303	0.00023586	0.07106	4.3756E-05	0.45409	0.00027962	615.7709631894559	15.53	1.0927	15.616	14.988	16.081	0.085423					33	20	2	0	0	0	0.74191	1	4886	4886		2.7352	1.0826	1	3117400	+		32237	9945	20300	20412	31036	31036					-0.07832535620354975
STREEQVP	8	Unmodified	_STREEQVP_					0	0	0		ENSG00000133055|ENST00000255416|MYBPH	ENSG00000133055|ENST00000255416|MYBPH	ENSG00000133055|ENST00000255416|MYBPH	MSMS	HCT116MG_D190212_S4	4	473.23480224609375	2	473.235439	944.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.316	1	24.058	23.558	24.558	-0.25816								0	0	0	0.8837	1	8561	8561		13.508	0.46542	1				32238	3223	20301	20413	31037	31037					-0.018125838672403916
STRIWESSQ	9	Unmodified	_STRIWESSQ_					0	0	0		ENST00000294383.6_1_1:55545316-55547089:-|nuORF	ENST00000294383.6_1_1:55545316-55547089:-|nuORF	ENST00000294383.6_1_1:55545316-55547089:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	547.2852172851562	2	547.26727	1092.51999	0.51802	0.0002835	-0.096844	-5.3E-05	0.42118	0.0002305	547.267153124996	28.513	0.36493	28.307	28.072	28.437	-0.20593					11	6	2	0	0	0	0.2025	1	10245	10245		19.257	0	1	4254200			32239	6968	20302	20414	31038	31038					-0.022572234301378558
STRKKKFKL	9	Unmodified	_STRKKKFKL_					0	0	0			REV__tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	REV__tr|U7SN84|U7SN84_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01701PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	379.24884033203125	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.43	1	55.139	54.639	55.639	-0.2918								0	0	0	0.77019	1	21026	21026		0.23584	0	1		+		32240	17731	20303	20415	31039	31039					0.1617396580197692
STRNLENEQP	10	Unmodified	_STRNLENEQP_					0	0	0		ENST00000495719.1_1_3:101576051-101578212:+|nuORF;nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ	ENST00000495719.1_1_3:101576051-101578212:+|nuORF	ENST00000495719.1_1_3:101576051-101578212:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	594.5950317382812	2	594.286191	1186.55783	0.5165	0.00030695	0.010811	6.425E-06	0.52731	0.00031337	594.2861041824581	17.164	0.67289	16.993	16.708	17.381	-0.17047					17	12	2	0	0	0	0.87945	1	5626	5626		3.5965	1.098	1	1336000			32241	3884	20304	20416	31040	31040					-0.02798757235359517
STRQRKNLPQ	10	Unmodified	_STRQRKNLPQ_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MSMS	HCT116MG_D190212_S3	3	614.35107421875	2	614.34946	1226.68437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.172	1	24.111	23.611	24.611	-0.061449								0	0	0	0.94339	1	8571	8571		6.2058	0.47393	1		+		32242	10801	20305	20417	31041	31041					0.08009213780451319
STRRLGRGQP	10	Unmodified	_STRRLGRGQP_					0	0	0			REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	564.3228759765625	2	564.323245	1126.63194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.031	1	33.737	33.237	34.237	-0.29419								0	0	0	0.94107	1	12512	12512		6.7232	0	1		+		32243	13508	20306	20418	31042	31042					0.07368675437510319
STRRLGRGQP	10	Unmodified	_STRRLGRGQP_					0	0	0			REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	REV__VWA3A|p.K873Nfs*2|1|0.11|ENSG00000175267|chr16:22144268-22144268|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	564.3228759765625	2	564.323245	1126.63194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.065	1	33.681	33.181	34.181	-0.38426								0	0	0	0.95507	1	12424	12424		3.5965	0	1		+		32244	13508	20306	20418	31043	31043					0.07368675437510319
STRRPTRPGPA	11	Unmodified	_STRRPTRPGPA_					0	0	0			REV__ENST00000418929.6_1_19:50096591-50097779:+|nuORF	REV__ENST00000418929.6_1_19:50096591-50097779:+|nuORF	MSMS	HCT116MG_D190212_S4	4	598.3378295898438	2	598.336353	1194.65815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.203	1	44.83	44.33	45.33	-0.37266								0	0	0	0.94755	1	16666	16666		7.609	1.4032	1		+		32245	15502	20307	20419	31044	31044					0.06860944609002217
STRRYEAGP	9	Unmodified	_STRRYEAGP_					0	0	0		ENST00000397881.7_2_19:10197589-10201972:+|nuORF	ENST00000397881.7_2_19:10197589-10201972:+|nuORF	ENST00000397881.7_2_19:10197589-10201972:+|nuORF	MSMS	HCT116MG_D190212_S4	4	518.7603149414062	2	518.762155	1035.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.465	1	16.3	15.8	16.8	-0.16489								0	0	0	0.76781	1	5391	5391		8.5933	0	1				32246	7675	20308	20420	31045	31045					-0.006577863647407867
STRSRSKLP	9	Unmodified	_STRSRSKLP_					0	0	0		ENST00000475193.1_1_3:32587326-32612262:-|nuORF;DYNC1LI1|p.K177Ffs*10|1|0.06|ENSG00000144635|chr3:32544916-32544917|-/TATAAAAA|frameshift_variant;DYNC1LI1|p.I430Nfs*2|1|0.3|ENSG00000144635|chr3:32529557-32529558|-/T|frameshift_variant;ENSG00000144635|ENST00000273130|DYNC1LI1	ENST00000475193.1_1_3:32587326-32612262:-|nuORF	ENST00000475193.1_1_3:32587326-32612262:-|nuORF	MSMS	HCT116MG_D190212_S3	3	516.3014526367188	2	516.301447	1030.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.446	1	32.167	31.667	32.667	-0.27841								0	0	0	0.76694	1	11892	11892		11.64	1.5664	1				32247	742	20309	20421	31046	31046					0.07427065940373723
STRVPRTGPCC	11	Unmodified	_STRVPRTGPCC_					0	0	0			REV__ENST00000222139.10_1_19:11489006-11489431:-|nuORF	REV__ENST00000222139.10_1_19:11489006-11489431:-|nuORF	MSMS	HCT116MG_D190212_S1	1	392.8584289550781	3	392.858592	1175.55395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.652	1	11.652	11.152	12.152	0								0	0	0	0.96121	1	3686	3686		0.45452	0.1855	1		+		32248	14522	20310	20422	31047	31047					-0.026808415343793968
STSALTTTSPS	11	Unmodified	_STSALTTTSPS_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.I2885Dfs*9|1|0.28|ENSG00000181143|chr19:8972486-8972487|-/C|frameshift_variant;MUC16|p.N2936Tfs*6|1|0.17|ENSG00000181143|chr19:8972332-8972332|T/-|frameshift_variant;MUC16|p.H3632Pfs*17|1|0.13|ENSG00000181143|chr19:8965875-8965876|-/G|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.L2546Kfs*23|1|0.04|ENSG00000181143|chr19:8973503-8973504|-/CCTT|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7598266601562	2	526.758943	1051.50333	0.3202	0.00016867	1.0603	0.0005585	1.3805	0.00072717	526.759766585787	22.744	1.8632	22.725	22.335	24.198	-0.018869					106	35	6	0	0	0	0.70662	1	8202	8202		19.362	4.1135	1	2866400000			32249	5624	20311	20423	31048	31048					-0.02035769106760199
STSCPASCPD	10	Unmodified	_STSCPASCPD_					0	0	0			REV__ENSG00000198854|ENST00000368775|C1orf68	REV__ENSG00000198854|ENST00000368775|C1orf68	MULTI-MSMS	HCT116MG_D190212_S2	2	484.178955078125	2	484.178417	966.342282	0.33012	0.00015984	0.99549	0.000482	1.3256	0.00064183	484.17878462092125	22.307	0.41463	21.922	21.791	22.206	-0.3852					10	7	2	0	0	0	0.76634	1	7918	7918		14.838	14.838	1	22725000	+		32250	14158	20312	20424	31049	31049					-0.1422355801601043
STSCVKDDSRL	11	Unmodified	_STSCVKDDSRL_					0	0	0			REV__ENST00000359238.6_2_17:46190750-46196415:+|nuORF	REV__ENST00000359238.6_2_17:46190750-46196415:+|nuORF	MSMS	HCT116MG_D190212_S2	2	605.7886962890625	2	605.790252	1209.56595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.777	1	15.443	14.943	15.943	-0.33451								0	0	0	0.9266	1	5266	5266		16.566	2.1605	1		+		32251	15072	20313	20425	31050	31050					-0.030449463102286245
STSEIARYFN	10	Unmodified	_STSEIARYFN_					0	0	0			REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	REV__nc|ENSG00000139908|Q6SA08-3|TSSK4	MULTI-MSMS	HCT116MG_D190212_S1	1	594.5738525390625	2	594.288202	1186.56185	-0.22731	-0.00013509	0.078038	4.6377E-05	-0.14927	-8.871E-05	594.2882015894045	38.258	0.52052	38.258	37.968	38.488	0					14	9	2	0	0	0	0.86339	1	14291	14291		6.7232	0	1	5314200	+		32252	12277	20314	20426	31051	31051					-0.023966677416183302
STSFRSLIK	9	Unmodified	_STSFRSLIK_					0	0	0			REV__FAM186A|p.K681Nfs*7|1|0.11|ENSG00000185958|chr12:50354789-50354789|T/-|frameshift_variant	REV__FAM186A|p.K681Nfs*7|1|0.11|ENSG00000185958|chr12:50354789-50354789|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	519.8012084960938	2	519.800749	1037.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.35	1	12.061	11.561	12.561	-0.28953								0	0	0	0.76978	1	4033	4033		1.6526	0.17072	1		+		32253	13867	20315	20427	31052	31052					0.06965431851608628
STSGLLNSTW	10	Unmodified	_STSGLLNSTW_					0	0	0		ENST00000526393.5_1_11:71502805-71507278:+|nuORF;nc|ENSG00000158483|Q9NVL1-2|FAM86C1P;nc|ENSG00000158483|Q9NVL1-3|FAM86C1P;nc|ENSG00000158483|Q9NVL1|FAM86C1P	ENST00000526393.5_1_11:71502805-71507278:+|nuORF	ENST00000526393.5_1_11:71502805-71507278:+|nuORF	MSMS	HCT116MG_D190212_S3	3	533.28271484375	2	533.264196	1064.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.265	1	26.115	25.615	26.615	-0.14924								0	0	0	0.88261	1	9415	9415		18.146	1.2041	1				32254	8589	20316	20428	31053	31053					-0.015837416616705013
STSGQNPTETQ	11	Unmodified	_STSGQNPTETQ_					0	0	0		ENST00000334534.9_1_20:10603642-10603747:+|nuORF	ENST00000334534.9_1_20:10603642-10603747:+|nuORF	ENST00000334534.9_1_20:10603642-10603747:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	575.2545166015625	2	575.254557	1148.49456	0.52906	0.00030434	0.1127	6.4831E-05	0.64176	0.00036918	575.2545784443201	17.046	0.46946	17.046	16.837	17.307	0					11	8	2	0	0	0	0.69138	1	5775	5775		24.991	2.3329	1	2388400			32255	7183	20317	20429	31054	31054					-0.07374742743240859
STSIGKRRFR	10	Unmodified	_STSIGKRRFR_					0	0	0		nc|ENSG00000205221|Q6UXI7-2|VIT;nc|ENSG00000205221|Q6UXI7-5|VIT;nc|ENSG00000205221|Q6UXI7|VIT;ENSG00000205221|ENST00000379242|VIT	nc|ENSG00000205221|Q6UXI7-2|VIT	nc|ENSG00000205221|Q6UXI7-2|VIT	MSMS	HCT116MG_D190212_S3	3	604.354248046875	2	604.354545	1206.69454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.092	1	35.791	35.291	36.291	-0.30042								0	0	0	0.94107	1	13324	13324		6.7232	0	1				32256	6373	20318	20430	31055	31055					0.09945821505675667
STSKSFDTP	9	Unmodified	_STSKSFDTP_					0	0	0			REV__nc|ENSG00000060749|Q2KHR3-2|QSER1	REV__nc|ENSG00000060749|Q2KHR3-2|QSER1	MSMS	HCT116MG_D190212_S2	2	485.228759765625	2	485.229822	968.445091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.634	1	23.25	22.75	23.75	-0.38324								0	0	0	0.30238	1	8432	8432		39.95	1.9757	1		+		32257	10671	20319	20431	31056	31056					-0.04039405961373177
STSLQRDLNW	10	Unmodified	_STSLQRDLNW_					0	0	0		ENST00000416034.1_1_21:45466695-45466776:-|nuORF	ENST00000416034.1_1_21:45466695-45466776:-|nuORF	ENST00000416034.1_1_21:45466695-45466776:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	610.3062744140625	2	610.306926	1218.5993	0.34556	0.00021089	-0.36431	-0.00022234	-0.018751	-1.1444E-05	610.3068354231817	16.594	0.93643	16.679	16.341	17.278	0.085424					24	17	2	0	0	0	0.87239	1	5718	5718		5.2969	0	1	2149300			32258	7756	20320	20432	31057	31057					-0.0012557647601170174
STSLYQNSGP	10	Unmodified	_STSLYQNSGP_					0	0	0		ENST00000466349.1_1_6:155632464-155635520:-|nuORF	ENST00000466349.1_1_6:155632464-155635520:-|nuORF	ENST00000466349.1_1_6:155632464-155635520:-|nuORF	MSMS	HCT116MG_D190212_S4	4	526.784912109375	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.386	1	30.029	29.529	30.529	-0.3571								0	0	0	0.90023	1	11013	11013		15.847	1.0089	1				32259	8107	20321	20433	31058	31058					-0.046686185583666884
STSLYQNSGP	10	Unmodified	_STSLYQNSGP_					0	0	0		ENST00000466349.1_1_6:155632464-155635520:-|nuORF	ENST00000466349.1_1_6:155632464-155635520:-|nuORF	ENST00000466349.1_1_6:155632464-155635520:-|nuORF	MSMS	HCT116MG_D190212_S4	4	527.2459106445312	2	527.246003	1052.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.571	1	30.207	29.707	30.707	-0.36416								0	0	0	0.90023	1	11064	11064		15.847	2.8047	1				32260	8107	20321	20433	31059	31059					-0.046686185583666884
STSNRLPL	8	Unmodified	_STSNRLPL_					0	0	0		ENST00000584432.5_1_17:21114282-21116768:-|nuORF;ENST00000583264.1_1_17:21101639-21117457:-|nuORF	ENST00000584432.5_1_17:21114282-21116768:-|nuORF	ENST00000584432.5_1_17:21114282-21116768:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	444.227783203125	2	444.250892	886.48723	0.42327	0.00018804	0.067426	2.9954E-05	0.49069	0.00021799	444.25085485859665	36.24	0.3626	36.112	35.916	36.278	-0.12799					11	6	3	0	0	0	0.60268	1	13514	13514		32.117	1.8922	1	20318000			32261	8967	20322	20434	31060	31060					0.03944614237661881
STSRGSQWQP	10	Unmodified	_STSRGSQWQP_					0	0	0		nc|ENSG00000077157|O60237-6|PPP1R12B	nc|ENSG00000077157|O60237-6|PPP1R12B	nc|ENSG00000077157|O60237-6|PPP1R12B	MULTI-MSMS	HCT116MG_D190212_S3	3	567.7728271484375	2	567.270344	1132.52613	0.33052	0.0001875	0.34826	0.00019756	0.67878	0.00038505	567.7721407450026	16.464	0.78034	16.549	16.341	17.121	0.085423					22	14	3	0	0	0	0.72678	1	5471	5471		18.146	2.2992	1	1648000			32262	9381	20323	20435	31061	31061					-0.03482705198621261
STSSGRLLY	9	Unmodified	_STSSGRLLY_					0	0	0		ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	MSMS	HCT116MG_D190212_S2	2	492.261474609375	2	492.261456	982.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.219	1	35.076	34.576	35.576	-0.14245								0	0	0	0.11662	1	13129	13129		53.404	15.43	1				32263	5047	20324	20436	31062	31062					0.016405795465288975
STSSGWFFVPP	11	Unmodified	_STSSGWFFVPP_					0	0	0			REV__ENST00000319231.9_3_14:88789222-88789348:-|nuORF	REV__ENST00000319231.9_3_14:88789222-88789348:-|nuORF	MSMS	HCT116MG_D190212_S3	3	606.2886352539062	2	606.290214	1210.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.618	1	27.43	26.93	27.93	-0.18847								0	0	0	0.94416	1	9961	9961		9.3831	0.63772	1		+		32264	14878	20325	20437	31063	31063					-0.03098578247909245
STSSQEMRTGR	11	Unmodified	_STSSQEMRTGR_					0	0	0		ENST00000397683.5_1_21:47735422-47737244:-|nuORF	ENST00000397683.5_1_21:47735422-47737244:-|nuORF	ENST00000397683.5_1_21:47735422-47737244:-|nuORF	MSMS	HCT116MG_D190212_S4	4	620.2924194335938	2	620.29095	1238.56735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.283	1	39.904	39.404	40.404	-0.37828								0	0	0	0.94851	1	14773	14773		7.1017	0.89594	1				32265	7671	20326	20438	31064	31064					-0.04239312221466207
STSWGSGNGA	10	Unmodified	_STSWGSGNGA_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;TNRC6A|p.E1066Sfs*20|1|0.3|ENSG00000090905|chr16:24793488-24793488|G/-|frameshift_variant;nc|ENSG00000090905|Q8NDV7-2|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MSMS	HCT116MG_D190212_S3	3	462.1466369628906	2	462.196313	922.378074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.983	1	23.921	23.421	24.421	-0.061449								0	0	0	0.93466	1	8495	8495		8.1555	2.3951	1				32266	1548	20327	20439	31065	31065					-0.08622016452466141
STSWGSGNGA	10	Unmodified	_STSWGSGNGA_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;TNRC6A|p.E1066Sfs*20|1|0.3|ENSG00000090905|chr16:24793488-24793488|G/-|frameshift_variant;nc|ENSG00000090905|Q8NDV7-2|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MSMS	HCT116MG_D190212_S3	3	462.19573974609375	2	462.196313	922.378074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.113	1	24.052	23.552	24.552	-0.061449								0	0	0	0.91638	1	8547	8547		12.241	6.0349	1				32267	1548	20327	20439	31066	31066					-0.08622016452466141
STSWGSGNGA	10	Unmodified	_STSWGSGNGA_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;TNRC6A|p.E1066Sfs*20|1|0.3|ENSG00000090905|chr16:24793488-24793488|G/-|frameshift_variant;nc|ENSG00000090905|Q8NDV7-2|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MSMS	HCT116MG_D190212_S4	4	462.14666748046875	2	462.196313	922.378074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.858	1	23.6	23.1	24.1	-0.25816								0	0	0	0.93466	1	8376	8376		8.1555	0.24537	1				32268	1548	20327	20439	31067	31067					-0.08622016452466141
STSWGTSRAA	10	Unmodified	_STSWGTSRAA_					0	0	0			REV__ENST00000269299.7_1_17:7077367-7077695:-|nuORF	REV__ENST00000269299.7_1_17:7077367-7077695:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	511.4721984863281	2	512.246338	1022.47812	0.43321	0.00022191	-0.11159	-5.7159E-05	0.32163	0.00016475	512.2463234121027	16.864	0.62513	16.864	16.421	17.046	0					15	11	2	0	0	0	0.30526	1	5561	5561		3.2813	0	1	2608300	+		32269	14690	20328	20440	31068	31068					-0.03221779118678114
STSWRSPSGP	10	Unmodified	_STSWRSPSGP_					0	0	0		ENST00000216181.9_1_22:36684951-36685147:-|nuORF	ENST00000216181.9_1_22:36684951-36685147:-|nuORF	ENST00000216181.9_1_22:36684951-36685147:-|nuORF	MSMS	HCT116MG_D190212_S4	4	531.2560424804688	2	531.254163	1060.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.799	1	24.53	24.03	25.03	-0.26881								0	0	0	0.80906	1	8756	8756		27.629	1.3607	1				32270	6737	20329	20441	31069	31069					-0.034054926016324316
STSYRFVKFD	10	Unmodified	_STSYRFVKFD_					0	0	0			REV__ENSG00000075856|ENST00000546815|SART3	REV__ENSG00000075856|ENST00000546815|SART3	MULTI-MSMS	HCT116MG_D190212_S4	4	417.21197509765625	3	417.211906	1248.61389	0.08016	3.3444E-05	-0.034934	-1.4575E-05	0.045226	1.8869E-05	417.2119148772599	23.597	0.2081	23.35	23.22	23.428	-0.24775					5	3	2	0	0	0	0.86862	1	8298	8298		3.3196	0.68841	1	1968500	+		32271	10814	20330	20442	31070	31070					-0.0004750432788114267
STTEDCCC	8	Unmodified	_STTEDCCC_					0	0	0		ENST00000493287.5_1_1:1337440-1337563:-|nuORF	ENST00000493287.5_1_1:1337440-1337563:-|nuORF	ENST00000493287.5_1_1:1337440-1337563:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	861.2455444335938	1	861.242316	860.23504	0.67275	0.0005794	1.935	0.0016665	2.6077	0.0022459	861.2452414627388	22.915	0.71681	22.896	22.647	23.364	-0.018869					40	13	4	0	0	0	0.86564	1	8036	8036		2.5775	1.7838	1	18732000			32272	8358	20331	20443	31071	31071					-0.20066851221884008
STTEDCCC	8	Unmodified	_STTEDCCC_					0	0	0		ENST00000493287.5_1_1:1337440-1337563:-|nuORF	ENST00000493287.5_1_1:1337440-1337563:-|nuORF	ENST00000493287.5_1_1:1337440-1337563:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	861.242316	860.23504	0.7103	0.00061174	2.0439	0.0017603	2.7542	0.002372	861.2449003494203	22.883	0.31257	22.883	22.741	23.054	0	-0.0083389	-0.00058624	NaN	2.5775	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5093500			32273	8358	20331	20443							-0.20066851221884008
STTEDCCC	8	Unmodified	_STTEDCCC_					0	0	0		ENST00000493287.5_1_1:1337440-1337563:-|nuORF	ENST00000493287.5_1_1:1337440-1337563:-|nuORF	ENST00000493287.5_1_1:1337440-1337563:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	861.242316	860.23504	0.70403	0.00060634	3.2059	0.0027611	3.91	0.0033674	861.2449771273455	23.294	0.51935	22.908	22.674	23.193	-0.3852	0.017439	0.00041454	NaN	2.5775	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7803400			32274	8358	20331	20443							-0.20066851221884008
STTEVEPPP	9	Unmodified	_STTEVEPPP_					0	0	0			REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	MULTI-MSMS	HCT116MG_D190212_S2	2	479.7196044921875	2	478.732197	955.449842	0.15823	7.5749E-05	-0.7684	-0.00036786	-0.61017	-0.00029211	478.7316502541755	23.552	0.31137	23.169	22.988	23.299	-0.38324					9	5	2	0	0	0	0.55919	1	8434	8434		13.508	3.3245	1	29091000	+		32275	17216	20332	20444	31072	31072					-0.029665218186096354
STTEVEPPP	9	Unmodified	_STTEVEPPP_					0	0	0			REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	478.732197	955.449842	0.14031	6.7171E-05	-1.0018	-0.00047961	-0.86153	-0.00041244	478.7316979348765	22.867	0.26025	22.867	22.741	23.001	0	-0.15089	-8.6842E-05	NaN	13.508	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8789200	+		32276	17216	20332	20444							-0.029665218186096354
STTEVEPPP	9	Unmodified	_STTEVEPPP_					0	0	0			REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	478.732197	955.449842	0.15823	7.5749E-05	-0.7684	-0.00036786	-0.61017	-0.00029211	478.7316502541755	23.552	0.31137	23.169	22.988	23.299	-0.38324	0.15089	0.00013667	NaN	13.508	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29091000	+		32277	17216	20332	20444							-0.029665218186096354
STTFGSHHL	9	Unmodified	_STTFGSHHL_					0	0	0		ENST00000483371.1_1_1:109171009-109177769:+|nuORF;nc|ENSG00000162636|Q5T8I3-2|EEIG2;ENSG00000162636|ENST00000370035|EEIG2	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	MSMS	HCT116MG_D190212_S1	1	493.7371826171875	2	493.738148	985.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.652	1	19.652	19.152	20.152	0								0	0	0	0.76694	1	6827	6827		11.64	2.2929	1				32278	4538	20333	20445	31073	31073					-0.031568602847755756
STTNFVKVA	9	Unmodified	_STTNFVKVA_					0	0	0			REV__IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant	REV__IKBKE|p.A197Sfs*108|2|0.36|ENSG00000263528|chr1:206476720-206476721|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	483.7665100097656	2	483.766374	965.518196	0.25139	0.00012161	-0.20055	-9.7017E-05	0.050842	2.4596E-05	483.76619331233707	23.997	0.20892	23.997	23.837	24.045	0					6	3	2	0	0	0	0.24895	1	8575	8575		36.127	0.082828	1	6330700	+		32279	14427	20334	20446	31074	31074					0.03405767551907957
STTRPEPCPV	10	Unmodified	_STTRPEPCPV_					0	0	0			REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	MSMS	HCT116MG_D190212_S3	3	543.764892578125	2	543.766049	1085.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.927	1	33.632	33.132	34.132	-0.29419								0	0	0	0.92917	1	12470	12470		9.3831	0.035688	1		+		32280	16020	20335	20447	31075	31075					-0.021793951594645478
STVEVLESID	10	Unmodified	_STVEVLESID_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MSMS	HCT116MG_D190212_S3	3	546.2743530273438	2	546.276969	1090.53938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.994	1	26.824	26.324	27.324	-0.16933								0	0	0	0.90892	1	9709	9709		13.906	0	1				32281	3858	20336	20448	31076	31076					-0.002263119298959282
STVIFFHFLV	10	Unmodified	_STVIFFHFLV_					0	0	0		nc|ENSG00000127993|Q5RL73-2|RBM48	nc|ENSG00000127993|Q5RL73-2|RBM48	nc|ENSG00000127993|Q5RL73-2|RBM48	MSMS	HCT116MG_D190212_S4	4	605.3391723632812	2	605.336967	1208.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.249	1	34.863	34.363	35.363	-0.38606								0	0	0	0.94107	1	12903	12903		6.7232	0	1				32282	9452	20337	20449	31077	31077					0.0633976592516774
STVIPRGEGP	10	Unmodified	_STVIPRGEGP_					0	0	0			REV__ENST00000572652.5_1_17:78195046-78195277:+|nuORF	REV__ENST00000572652.5_1_17:78195046-78195277:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	506.7745666503906	2	506.774731	1011.53491	0.12269	6.2178E-05	-0.53701	-0.00027214	-0.41432	-0.00020997	506.7744037090566	21.018	0.20817	21.053	20.975	21.183	0.034473					5	3	2	0	0	0	0.64004	1	7338	7338		25.399	6.0374	1	2281300	+		32283	16581	20338	20450	31078	31078					0.029602684378687627
STVKGLLGG	9	Unmodified	_STVKGLLGG_					0	0	0			REV__nc|ENSG00000198183|Q9NP55-2|BPIFA1	REV__nc|ENSG00000198183|Q9NP55-2|BPIFA1	MSMS	HCT116MG_D190212_S2	2	416.248779296875	2	416.25036	830.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.694	1	21.309	20.809	21.809	-0.38503								0	0	0	0.76818	1	7648	7648		7.2892	2.0586	1		+		32284	14115	20339	20451	31079	31079					0.06414399868754117
STVLIKNEGP	10	Unmodified	_STVLIKNEGP_					0	0	0			REV__nc|ENSG00000131725|Q5JSH3-3|WDR44	REV__nc|ENSG00000131725|Q5JSH3-3|WDR44	MSMS	HCT116MG_D190212_S3	3	529.297607421875	2	529.298039	1056.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.856	1	34.559	34.059	35.059	-0.29707								0	0	0	0.86471	1	12845	12845		20.454	6.5476	1		+		32285	11968	20340	20452	31080	31080					0.0554970826913177
STVLQISVP	9	Unmodified	_STVLQISVP_					0	0	0			REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	472.27581787109375	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.199	1	40.822	40.322	41.322	-0.37732								0	0	0	0.76669	1	15143	15143		12.532	0	1		+		32286	9872	20341	20453	31081	31081					0.06502938211701803
STVNVGLGSAP	11	Unmodified	_STVNVGLGSAP_					0	0	0			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MSMS	HCT116MG_D190212_S4	4	501.2664794921875	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.463	1	23.215	22.715	23.715	-0.24775								0	0	0	0.86121	1	8216	8216		24.991	2.2547	1		+		32287	11239	20342	20454	31082	31082					0.01868562200957058
STVNYGCPADC	11	Unmodified	_STVNYGCPADC_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	HCT116MG_D190212_S3	3	564.7535400390625	2	565.218074	1128.42159	0.58324	0.00032966	-0.43607	-0.00024648	0.14717	8.3181E-05	565.2179354248797	27.731	0.52	27.543	27.205	27.725	-0.18847					18	9	3	0	0	0	0.36112	1	10077	10077		4.1895	0	1	26372000	+		32288	13745	20343	20455	31083	31083					-0.13747911061841478
STVVHPES	8	Unmodified	_STVVHPES_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.Y1316Tfs*56|3|0.29|ENSG00000185920|chr9:95447311-95447311|G/-|frameshift_variant;PTCH1|p.R1308Efs*64|1|0.24|ENSG00000185920|chr9:95447335-95447335|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-MSMS	HCT116MG_D190212_S3	3	855.4205322265625	1	855.420673	854.413397	0.6866	0.00058733	0.26458	0.00022632	0.95118	0.00081366	855.4209271948301	23.722	0.31263	23.66	23.478	23.791	-0.061449					7	5	2	0	0	0	0.55794	1	8403	8403		36.044	1.8569	1	3548300			32289	5855	20344	20456	31084	31084					-0.01963353924668354
STVVHPES	8	Unmodified	_STVVHPES_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.Y1316Tfs*56|3|0.29|ENSG00000185920|chr9:95447311-95447311|G/-|frameshift_variant;PTCH1|p.R1308Efs*64|1|0.24|ENSG00000185920|chr9:95447335-95447335|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-MSMS	HCT116MG_D190212_S4	4	855.421630859375	1	855.420673	854.413397	0.76269	0.00065242	0.56091	0.00047981	1.3236	0.0011322	855.4210498816642	23.924	0.312	23.666	23.521	23.833	-0.25816					8	5	2	0	0	0	0.46267	1	8420	8420		44.407	10.22	1	2838200			32290	5855	20344	20456	31085	31085					-0.01963353924668354
STVVHPES	8	Unmodified	_STVVHPES_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.Y1316Tfs*56|3|0.29|ENSG00000185920|chr9:95447311-95447311|G/-|frameshift_variant;PTCH1|p.R1308Efs*64|1|0.24|ENSG00000185920|chr9:95447335-95447335|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	855.420673	854.413397	0.6866	0.00058733	0.26458	0.00022632	0.95118	0.00081366	855.4209271948301	23.722	0.31263	23.66	23.478	23.791	-0.061449	-0.0027741	-0.00016535	NaN	44.407	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3548300			32291	5855	20344	20456							-0.01963353924668354
STVVRSRF	8	Unmodified	_STVVRSRF_					0	0	0		ENST00000588124.1_1_19:9435006-9443770:+|nuORF	ENST00000588124.1_1_19:9435006-9443770:+|nuORF	ENST00000588124.1_1_19:9435006-9443770:+|nuORF	MSMS	HCT116MG_D190212_S2	2	476.2713928222656	2	476.272158	950.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.328	1	21.943	21.443	22.443	-0.3852								0	0	0	0.75335	1	7904	7904		26.341	8.2063	1				32292	9013	20345	20457	31086	31086					0.05252009365904087
STVYVISFIA	10	Unmodified	_STVYVISFIA_					0	0	0			REV__ENSG00000155249|ENST00000641172|OR4K1	REV__ENSG00000155249|ENST00000641172|OR4K1	MSMS	HCT116MG_D190212_S4	4	550.3068237304688	2	550.305332	1098.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.074	1	31.699	31.199	32.199	-0.37529								0	0	0	0.94339	1	11667	11667		6.2058	1.3088	1		+		32293	12697	20346	20458	31087	31087					0.05075780417291753
STWGDWECEC	10	Unmodified	_STWGDWECEC_					0	0	0		ENST00000373109.6_1_10:73822347-73822434:-|nuORF	ENST00000373109.6_1_10:73822347-73822434:-|nuORF	ENST00000373109.6_1_10:73822347-73822434:-|nuORF	MSMS	HCT116MG_D190212_S3	3	608.5409545898438	2	608.207706	1214.40086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.958	1	15.041	14.541	15.541	0.083271								0	0	0	0.96377	1	4857	4857		1.6526	0.32309	1				32294	7471	20347	20459	31088	31088					-0.19776501441515393
STWTNQNT	8	Unmodified	_STWTNQNT_					0	0	0		nc|ENSG00000165325|Q05D60-2|DEUP1;ENSG00000165325|ENST00000298050|DEUP1	nc|ENSG00000165325|Q05D60-2|DEUP1	nc|ENSG00000165325|Q05D60-2|DEUP1	MSMS	HCT116MG_D190212_S4	4	476.211181640625	2	476.211963	950.409374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.213	1	26.901	26.401	27.401	-0.3114								0	0	0	0.8837	1	9731	9731		7.9102	2.6795	1				32295	4766	20348	20460	31089	31089					-0.06781443418390154
STYFYNENDSY	11	Unmodified	_STYFYNENDSY_					0	0	0		tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1	tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1	tr|U7T5Y4|U7T5Y4_FUSNUP-typeconjugativetransferproteinTrbGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00017PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	701.7756958007812	2	701.775322	1401.53609	0.97823	0.0006865	-1.0333	-0.00072515	-0.055085	-3.8657E-05	701.7745460124023	28.773	0.2601	28.551	28.421	28.681	-0.22195					7	4	2	0	0	0	0.36968	1	10434	10434		57.722	36.185	1	10684000			32296	18640	20349	20461	31090	31090					-0.14861606774547909
STYGNFLNY	9	Unmodified	_STYGNFLNY_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MSMS	HCT116MG_D190212_S2	2	539.743896484375	2	539.745639	1077.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.062	1	15.728	15.228	16.228	-0.33451								0	0	0	0.69648	1	5380	5380		19.257	1.1106	1		+		32297	12621	20350	20462	31091	31091					-0.058914132074278314
STYQAKPDPS	10	Unmodified	_STYQAKPDPS_					0	0	0			REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF	REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	547.2616577148438	2	547.261653	1092.50875	0.37126	0.00020317	-0.088359	-4.8355E-05	0.2829	0.00015482	547.2613242498486	31.38	1.1859	31.109	30.348	31.534	-0.27028					29	22	2	0	0	0	0.75066	1	11347	11347		16.149	0.90062	1	4323700	+		32298	12514	20351	20463	31092	31092					-0.03380045524295383
STYQAKPDPS	10	Unmodified	_STYQAKPDPS_					0	0	0			REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF	REV__ENST00000517923.1_1_8:23399285-23423875:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	547.763671875	2	547.261653	1092.50875	0.46686	0.00025549	0.028778	1.5749E-05	0.49564	0.00027124	547.2615277026393	31.285	1.248	30.915	30.243	31.491	-0.37026					42	26	2	0	0	0	0.75066	1	11428	11428		16.149	0.30192	1	3750000	+		32299	12514	20351	20463	31093	31093					-0.03380045524295383
STYRGQDIEY	10	Unmodified	_STYRGQDIEY_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MSMS	HCT116MG_D190212_S4	4	616.282958984375	2	616.283117	1230.55168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.15	1	37.768	37.268	38.268	-0.38283								0	0	0	0.91279	1	13971	13971		13.042	1.5478	1				32300	2391	20352	20464	31094	31094					-0.05437275466852043
STYRSKRQRKH	11	Unmodified	_STYRSKRQRKH_					0	0	0			REV__ENST00000545260.5_2_10:34398874-34399204:-|nuORF	REV__ENST00000545260.5_2_10:34398874-34399204:-|nuORF	MSMS	HCT116MG_D190212_S2	2	723.9080810546875	2	723.905465	1445.79638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.221	1	27.891	27.391	28.391	-0.32987								0	0	0	0.95196	1	10285	10285		5.2969	2.0156	1		+		32301	16392	20353	20465	31095	31095					0.09131067857447306
STYSRFLEA	9	Unmodified	_STYSRFLEA_					0	0	0		ENST00000344773.6_1_2:28561412-28561616:+|nuORF	ENST00000344773.6_1_2:28561412-28561616:+|nuORF	ENST00000344773.6_1_2:28561412-28561616:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	537.2655029296875	2	537.266739	1072.51892	0.44422	0.00023866	-2.6264	-0.0014111	-2.1822	-0.0011724	537.2655677042383	20.154	0.2078	19.954	19.834	20.042	-0.19986					5	3	2	0	0	0	0.51829	1	6910	6910		15.847	1.4418	1	1382900			32302	7255	20354	20466	31096	31096					-0.014434377990482972
STYSRTYRR	9	Unmodified	_STYSRTYRR_					0	0	0		tr|U7T432|U7T432_FUSNUJdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00237PE=4SV=1	tr|U7T432|U7T432_FUSNUJdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00237PE=4SV=1	tr|U7T432|U7T432_FUSNUJdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00237PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	595.2791748046875	2	595.307261	1188.59997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.567	1	33.182	32.682	33.682	-0.38426								0	0	0	0.76718	1	12224	12224		10.824	0.75	1				32303	18616	20355	20467	31097	31097					0.013212629636882411
STYWKFCP	8	Unmodified	_STYWKFCP_					0	0	0			REV__ENSG00000197859|ENST00000651351|ADAMTSL2	REV__ENSG00000197859|ENST00000651351|ADAMTSL2	MSMS	HCT116MG_D190212_S1	1	516.2379760742188	2	516.236396	1030.45824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.876	1	17.876	17.376	18.376	0								0	0	0	0.8837	1	6111	6111		5.7604	0	1		+		32304	14091	20356	20468	31098	31098					-0.05577246382972589
STYYNISAQN	10	Unmodified	_STYYNISAQN_					0	0	0			REV__ENSG00000184788|ENST00000644105|SATL1	REV__ENSG00000184788|ENST00000644105|SATL1	MSMS	HCT116MG_D190212_S3	3	580.7628173828125	2	580.76456	1159.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.076	1	15.159	14.659	15.659	0.083271								0	0	0	0.94107	1	4905	4905		6.7232	0.51738	1		+		32305	13811	20357	20469	31099	31099					-0.05880947012633442
STYYNISAQN	10	Unmodified	_STYYNISAQN_					0	0	0			REV__ENSG00000184788|ENST00000644105|SATL1	REV__ENSG00000184788|ENST00000644105|SATL1	MSMS	HCT116MG_D190212_S4	4	580.7625122070312	2	580.76456	1159.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.755	1	14.594	14.094	15.094	-0.16089								0	0	0	0.94107	1	4701	4701		6.7232	0.99131	1		+		32306	13811	20357	20469	31100	31100					-0.05880947012633442
SVACQPPSEPR	11	Unmodified	_SVACQPPSEPR_					0	0	0		nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;RC3H2|p.T1132Qfs*5|1|0.29|ENSG00000056586|chr9:122849809-122849809|T/-|frameshift_variant;ENSG00000056586|ENST00000357244|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	MULTI-MSMS	HCT116MG_D190212_S4	4	585.78271484375	2	585.78223	1169.54991	0.44414	0.00026017	0.1254	7.3459E-05	0.56954	0.00033363	585.7823863207789	20.319	1.1859	20.118	19.322	20.508	-0.20133					49	22	3	0	0	0	0.72218	1	6973	6973		13.615	0.5724	1	6133300			32307	1088	20358	20470	31101	31101					-0.028086077564466905
SVACQPPSEPR	11	Unmodified	_SVACQPPSEPR_					0	0	0		nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;RC3H2|p.T1132Qfs*5|1|0.29|ENSG00000056586|chr9:122849809-122849809|T/-|frameshift_variant;ENSG00000056586|ENST00000357244|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	MULTI-MSMS	HCT116MG_D190212_S4	4	585.7821044921875	2	585.78223	1169.54991	0.46124	0.00027019	-0.3018	-0.00017679	0.15944	9.3398E-05	585.7821614702907	21.297	0.88284	21.088	20.448	21.331	-0.20959					39	16	3	0	0	0	0.6626	1	7228	7228		28.495	5.7582	1	5967100			32308	1088	20358	20470	31102	31102					-0.028086077564466905
SVADTVARV	9	Unmodified	_SVADTVARV_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	HCT116MG_D190212_S2	2	459.2559814453125	2	459.256174	916.497795	0.055822	2.5637E-05	0.010749	4.9366E-06	0.066571	3.0573E-05	459.2560853540568	32.563	0.36478	32.333	32.15	32.515	-0.23009					9	6	2	0	0	0	0.023778	1	12054	12054		92.653	41.024	1	21990000			32309	3917	20359	20471	31103	31103					0.03620596892085359
SVADTVARV	9	Unmodified	_SVADTVARV_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	459.256174	916.497795	-0.055788	-2.5621E-05	-0.07259	-3.3337E-05	-0.12838	-5.8958E-05	459.25607033369863	32.339	0.15614	32.339	32.222	32.378	0	0.0030687	-5.9341E-05	NaN	92.653	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3506700			32310	3917	20359	20471							0.03620596892085359
SVAEALGIV	9	Unmodified	_SVAEALGIV_					0	0	0		ENSG00000128513|ENST00000357628|POT1;POT1|p.D617Hfs*20|1|0.02|ENSG00000128513|chr7:124824019-124824020|-/TAGCATGG|frameshift_variant	ENSG00000128513|ENST00000357628|POT1	ENSG00000128513|ENST00000357628|POT1	MULTI-MSMS	HCT116MG_D190212_S2	2	858.4934692382812	1	858.49311	857.485833	0.73447	0.00063053	-0.16536	-0.00014196	0.5691	0.00048857	858.4928507508121	50.859	0.25797	50.68	50.552	50.81	-0.17868					7	4	2	0	0	0	0.031005	1	19528	19528		85.357	10.934	1	23218000			32311	2996	20360	20472	31104	31104					0.051389801488994635
SVAHSHHGAP	10	Unmodified	_SVAHSHHGAP_					0	0	0			REV__HCFC1|p.R1232H|1|0.56|ENSG00000172534|chrX:153954704-153954704|C/T|missense_variant	REV__HCFC1|p.R1232H|1|0.56|ENSG00000172534|chrX:153954704-153954704|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	500.240966796875	2	500.24139	998.468226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.755	1	19.814	19.314	20.314	0.05983								0	0	0	0.81484	1	6793	6793		26.884	3.7352	1		+		32312	16868	20361	20473	31105	31105					-0.0310692233338159
SVAIRKRS	8	Unmodified	_SVAIRKRS_					0	0	0		nc|ENSG00000164741|Q96QB1-5|DLC1;nc|ENSG00000164741|Q96QB1-3|DLC1;DLC1|p.R617Gfs*37|2|0.15|ENSG00000164741|chr8:13100488-13100488|G/-|frameshift_variant;DLC1|p.S830Rfs*7|1|0.33|ENSG00000164741|chr8:13099850-13099850|G/-|frameshift_variant;DLC1|p.Q1096Sfs*33|1|0.29|ENSG00000164741|chr8:13095127-13095127|G/-|frameshift_variant;ENSG00000164741|ENST00000276297|DLC1;DLC1|p.N286Qfs*6|1|0.38|ENSG00000164741|chr8:13499216-13499217|-/G|frameshift_variant	nc|ENSG00000164741|Q96QB1-5|DLC1	nc|ENSG00000164741|Q96QB1-5|DLC1	MULTI-MSMS	HCT116MG_D190212_S2	2	458.7881164550781	2	458.787976	915.561398	0.075145	3.4476E-05	0.51386	0.00023575	0.58901	0.00027023	458.78811702276835	50.131	1.8603	49.968	49.686	51.546	-0.16376					97	35	5	0	0	0	0.85571	1	19173	19173		4.3292	0	1	1545599999.9999998			32313	682	20362	20474	31106	31106					0.10024002119848774
SVAIRKRS	8	Unmodified	_SVAIRKRS_					0	0	0		nc|ENSG00000164741|Q96QB1-5|DLC1;nc|ENSG00000164741|Q96QB1-3|DLC1;DLC1|p.R617Gfs*37|2|0.15|ENSG00000164741|chr8:13100488-13100488|G/-|frameshift_variant;DLC1|p.S830Rfs*7|1|0.33|ENSG00000164741|chr8:13099850-13099850|G/-|frameshift_variant;DLC1|p.Q1096Sfs*33|1|0.29|ENSG00000164741|chr8:13095127-13095127|G/-|frameshift_variant;ENSG00000164741|ENST00000276297|DLC1;DLC1|p.N286Qfs*6|1|0.38|ENSG00000164741|chr8:13499216-13499217|-/G|frameshift_variant	nc|ENSG00000164741|Q96QB1-5|DLC1	nc|ENSG00000164741|Q96QB1-5|DLC1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	458.787976	915.561398	-0.00022134	-1.0155E-07	-0.084086	-3.8578E-05	-0.084308	-3.8679E-05	458.787851599944	49.777	1.0827	49.777	49.337	50.42	0	-0.095405	-0.0004446	NaN	4.3292	57	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2448400000			32314	682	20362	20474							0.10024002119848774
SVALEPLQSP	10	Unmodified	_SVALEPLQSP_					0	0	0		ENST00000479252.1_1_1:90228726-90228918:+|nuORF	ENST00000479252.1_1_1:90228726-90228918:+|nuORF	ENST00000479252.1_1_1:90228726-90228918:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	520.7847900390625	2	520.784764	1039.55498	0.34978	0.00018216	-0.446	-0.00023227	-0.096223	-5.0112E-05	520.7842600601107	47.507	0.28577	47.507	47.309	47.595	0					14	5	3	0	0	0	0.87945	1	18086	18086		3.5965	0	1	15579000			32315	8226	20363	20475	31107	31107					0.03678019377821329
SVALICLLWQ	10	Unmodified	_SVALICLLWQ_					0	0	0		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-MSMS	HCT116MG_D190212_S1	1	573.3238525390625	2	573.323002	1144.63145	0.49016	0.00028102	0.94972	0.0005445	1.4399	0.00082552	573.3234823161475	46.281	0.25856	46.281	46.13	46.389	0					9	4	3	0	0	0	0.73913	1	17581	17581		17.113	17.113	1	8318500			32316	4851	20364	20476	31108	31108					0.06492119673430352
SVALMSVIP	9	Unmodified	_SVALMSVIP_					0	0	0			REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1	REV__tr|U7SUF9|U7SUF9_FUSNUD-methioninetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01220PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	458.7632751464844	2	458.762246	915.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.885	1	35.499	34.999	35.999	-0.38606								0	0	0	0.76818	1	13111	13111		7.2892	0	1		+		32317	17831	20365	20477	31109	31109					0.04880497310921328
SVALRQRQRR	10	Unmodified	_SVALRQRQRR_					0	0	0			REV__nc|ENSG00000177575|Q86VB7-4|CD163	REV__nc|ENSG00000177575|Q86VB7-4|CD163	MSMS	HCT116MG_D190212_S3	3	635.384765625	2	635.384168	1268.75378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.015	1	50.701	50.201	51.201	-0.31381								0	0	0	0.94107	1	19252	19252		6.7232	0.99131	1		+		32318	17226	20366	20478	31110	31110					0.1301571751987467
SVALRQRQRR	10	Unmodified	_SVALRQRQRR_					0	0	0			REV__nc|ENSG00000177575|Q86VB7-4|CD163	REV__nc|ENSG00000177575|Q86VB7-4|CD163	MSMS	HCT116MG_D190212_S4	4	635.721923828125	2	635.384168	1268.75378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.41	1	54.086	53.586	54.586	-0.32349								0	0	0	0.95648	1	20343	20343		3.2813	0.28607	1		+		32319	17226	20366	20478	31111	31111					0.1301571751987467
SVALVVNEI	9	Unmodified	_SVALVVNEI_					0	0	0		tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	tr|U7SZP2|U7SZP2_FUSNUHistidinekinasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00818PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	472.5147399902344	2	472.276575	942.538597	-0.068278	-3.2246E-05	-2.1112	-0.00099707	-2.1795	-0.0010293	472.2755870124943	49.978	0.20495	49.814	49.686	49.891	-0.16369					5	3	2	0	0	0	0.25004	1	19131	19131		10.824	1.4408	1	20808000			32320	18535	20367	20479	31112	31112					0.06502938211713172
SVAQPGPP	8	Unmodified	_SVAQPGPP_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	HCT116MG_D190212_S2	2	376.7004089355469	2	376.700503	751.386454	0.033181	1.2499E-05	0.0089535	3.3728E-06	0.042134	1.5872E-05	376.7003691894342	33.686	0.25988	33.493	33.327	33.587	-0.19297					9	4	3	0	0	0	0.79062	1	12515	12515		12.532	0	1	47967000			32321	4935	20368	20480	31113	31113					0.0008158225481338377
SVAWQSWCP	9	Unmodified	_SVAWQSWCP_					0	0	0			REV__ENST00000222139.10_1_19:11489006-11489431:-|nuORF	REV__ENST00000222139.10_1_19:11489006-11489431:-|nuORF	MSMS	HCT116MG_D190212_S3	3	355.0698547363281	3	355.160377	1062.4593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.363	1	18.44	17.94	18.94	0.076334								0	0	0	0.768	1	6232	6232		4.897	0.70751	1		+		32322	14522	20369	20481	31114	31114					-0.06943032014078199
SVCTFSVLAL	10	Unmodified	_SVCTFSVLAL_					0	0	0			REV__ENSG00000259224|ENST00000412468|SLC35G6	REV__ENSG00000259224|ENST00000412468|SLC35G6	MSMS	HCT116MG_D190212_S2	2	520.2786865234375	2	520.27826	1038.54197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.447	1	51.267	50.767	51.767	-0.18057								0	0	0	0.5764	1	19739	19739		43.858	11.073	1		+		32323	14411	20370	20482	31115	31115					0.024238649940571122
SVDALESPGP	10	Unmodified	_SVDALESPGP_					0	0	0		ENST00000357429.10_1_7:1036905-1037229:-|nuORF	ENST00000357429.10_1_7:1036905-1037229:-|nuORF	ENST00000357429.10_1_7:1036905-1037229:-|nuORF	MSMS	HCT116MG_D190212_S3	3	485.7518310546875	2	486.237647	970.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.469	1	25.363	24.863	25.863	-0.10618								0	0	0	0.28631	1	9094	9094		61.357	23.383	1				32324	7310	20371	20483	31116	31116					-0.02567119444324817
SVDFSRPQ	8	Unmodified	_SVDFSRPQ_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	HCT116MG_D190212_S4	4	468.2327880859375	2	468.232699	934.450845	0.050723	2.375E-05	-0.040728	-1.907E-05	0.0099954	4.6802E-06	468.2326901078363	21.255	0.51907	21.045	20.656	21.175	-0.20959					14	9	2	0	0	0	0.3916	1	7350	7350		50.855	0.92203	1	3672800			32325	6438	20372	20484	31117	31117					-0.01900262659046348
SVDFSRPQ	8	Unmodified	_SVDFSRPQ_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	468.232699	934.450845	0.14557	6.8163E-05	-0.067842	-3.1766E-05	0.077733	3.6397E-05	468.23258125640524	21.384	0.25865	21.001	20.859	21.117	-0.38288	-0.014265	2.345E-05	NaN	50.855	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4148500			32326	6438	20372	20484							-0.01900262659046348
SVDGVIKEV	9	Unmodified	_SVDGVIKEV_					0	0	0		ENST00000554482.1_1_14:74947450-74959914:-|nuORF;nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	ENST00000554482.1_1_14:74947450-74959914:-|nuORF	ENST00000554482.1_1_14:74947450-74959914:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	473.2665100097656	2	473.266207	944.517862	0.65487	0.00030993	0.014202	6.7212E-06	0.66907	0.00031665	473.26614074998133	37.473	0.25471	37.473	37.348	37.602	0					6	4	2	0	0	0	0.02327	1	14021	14021		93.166	21.244	1	10147000			32327	2654	20373	20485	31118	31118					0.043383478320379254
SVDKEQKL	8	Unmodified	_SVDKEQKL_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	MSMS	HCT116MG_D190212_S2	2	473.76373291015625	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.455	1	19.085	18.585	19.585	-0.3695								0	0	0	0.69969	1	6746	6746		30.637	5.2372	1				32328	4392	20374	20486	31119	31119					0.03817463689279066
SVDKEQKL	8	Unmodified	_SVDKEQKL_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	MULTI-SECPEP	HCT116MG_D190212_S2	2	474.2378234863281	2	473.763832	945.513111	0.24608	0.00011658	0.13375	6.3367E-05	0.37983	0.00017995	473.7637408229336	19.376	0.20867	19.006	18.888	19.096	-0.3695					7	3	3	0	0	0	0.060541	1	6726	6726		106.94	17.539	1	8424600			32329	4392	20374	20486	31120	31120					0.03817463689279066
SVDKKGHVHY	10	Unmodified	_SVDKKGHVHY_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant;ENST00000536999.1_1_12:6705170-6707214:-|nuORF	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	585.3067626953125	2	585.306729	1168.59891	0.44544	0.00026072	0.24338	0.00014245	0.68882	0.00040317	585.3066216599402	16.05	0.20892	15.715	15.585	15.794	-0.33451					5	3	2	0	0	0	0.40349	1	5400	5400		41.956	24.843	1	7800800			32330	428	20375	20487	31121	31121					0.021350485948232745
SVDLQLSDLPF	11	Unmodified	_SVDLQLSDLPF_					0	0	0			REV__DCHS2|p.F225Lfs*14|1|0.4|ENSG00000197410|chr4:154366229-154366229|A/-|frameshift_variant	REV__DCHS2|p.F225Lfs*14|1|0.4|ENSG00000197410|chr4:154366229-154366229|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	617.3214111328125	2	617.321711	1232.62887	0.58735	0.00036259	-0.1135	-7.0068E-05	0.47385	0.00029252	617.3214323550532	53.207	0.26175	52.904	52.773	53.035	-0.30305					7	4	2	0	0	0	0.71532	1	20161	20161		16.149	3.1066	1	3284300	+		32331	10336	20376	20488	31122	31122					0.021859427494518968
SVDPDAECKY	10	Unmodified	_SVDPDAECKY_					0	0	0		ANO1|p.I194Sfs*24|1|0.42|ENSG00000131620|chr11:70104032-70104032|A/-|frameshift_variant;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1	ANO1|p.I194Sfs*24|1|0.42|ENSG00000131620|chr11:70104032-70104032|A/-|frameshift_variant	ANO1|p.I194Sfs*24|1|0.42|ENSG00000131620|chr11:70104032-70104032|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	563.7401123046875	2	563.739696	1125.46484	0.41762	0.00023543	0.31586	0.00017806	0.73348	0.00041349	563.7397617390449	29.05	0.46044	28.733	28.555	29.015	-0.31613					17	8	4	0	0	0	0.066546	1	10625	10625		80.676	51.594	1	109950000			32332	143	20377	20489	31123	31123					-0.0928739801292977
SVDPDAECKY	10	Unmodified	_SVDPDAECKY_					0	0	0		ANO1|p.I194Sfs*24|1|0.42|ENSG00000131620|chr11:70104032-70104032|A/-|frameshift_variant;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1	ANO1|p.I194Sfs*24|1|0.42|ENSG00000131620|chr11:70104032-70104032|A/-|frameshift_variant	ANO1|p.I194Sfs*24|1|0.42|ENSG00000131620|chr11:70104032-70104032|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	563.739990234375	2	563.739696	1125.46484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.11	1	28.888	28.388	29.388	-0.22195								0	0	0	0.12168	1	10562	10562		78.06	34.288	1				32333	143	20377	20489	31124	31124					-0.0928739801292977
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	HCT116MG_D190212_S1	1	561.2661743164062	2	561.266739	1120.51892	0.33945	0.00019052	0.1564	8.7781E-05	0.49585	0.0002783	561.2667688482221	43.268	0.36447	43.268	43.056	43.42	0					26	6	5	0	0	0	0.010342	1	16322	16322		147.06	94.791	1	466180000			32334	1988	20378	20490	31125	31125					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	HCT116MG_D190212_S1	1	1121.5272216796875	1	1121.5262	1120.51892	0.54545	0.00061174	0.042672	4.7858E-05	0.58812	0.00065959	1121.5263726933351	43.283	0.26031	43.283	43.108	43.368	0					9	4	3	0	0	0	0.023158	1	16359	16359		114.65	84.013	1	18852000			32335	1988	20378	20490	31126	31126					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	HCT116MG_D190212_S2	2	1121.526611328125	1	1121.5262	1120.51892	0.065007	7.2907E-05	0.54628	0.00061266	0.61129	0.00068557	1121.5265972444618	43.248	0.46436	43.174	42.994	43.458	-0.073376					18	8	3	0	0	0	0.010342	1	16397	16397		147.06	103.2	1	139570000			32336	1988	20378	20490	31127	31127					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	HCT116MG_D190212_S3	3	561.2669677734375	2	561.266739	1120.51892	0.44583	0.00025023	0.10958	6.1504E-05	0.55541	0.00031174	561.2667224133955	43.572	0.7789	43.266	42.982	43.761	-0.30616					37	14	4	0	0	0	0.015946	2	16233	16233;16374		129.77	85.914	1	169810000			32337	1988	20378	20490	31128;31129	31128					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	HCT116MG_D190212_S3	3	1121.52734375	1	1121.5262	1120.51892	0.44792	0.00050236	-0.84609	-0.00094891	-0.39817	-0.00044656	1121.5257455670478	43.572	0.20829	43.266	43.136	43.344	-0.30616					5	3	2	0	0	0	0.023158	1	16275	16275		114.65	84.013	1	5718000			32338	1988	20378	20490	31130	31130					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	HCT116MG_D190212_S4	4	561.2669677734375	2	561.266739	1120.51892	0.17114	9.6057E-05	0.26058	0.00014625	0.43172	0.00024231	561.2667326872693	43.632	0.35309	43.257	43.114	43.467	-0.37433					19	6	4	0	0	0	0.020806	1	16040	16040		118.89	80.921	1	39165000			32339	1988	20378	20490	31131	31131					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	561.266739	1120.51892	-0.052465	-2.9447E-05	0.26602	0.00014931	0.21356	0.00011986	561.2668906668835	43.248	0.97827	43.174	42.943	43.921	-0.073376	-0.06719	4.726E-05	NaN	147.06	63	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1990999999.9999998			32340	1988	20378	20490							-0.03651437799021551
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	HCT116MG_D190212_S1	1	1039.458740234375	1	1039.45785	1038.45057	1.1226	0.0011669	-0.33259	-0.00034572	0.78997	0.00082114	1039.4575935763025	28.62	0.47589	28.62	28.375	28.851	0					18	8	3	0	0	0	0.0038512	1	10413	10413		152.89	102.95	1	26101000			32341	866	20379	20491	31132	31132					-0.06711727169567894
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	HCT116MG_D190212_S1	1	520.7341918945312	2	520.232561	1038.45057	0.68607	0.00035692	0.25284	0.00013154	0.93891	0.00048845	520.2327654426937	28.59	0.26461	28.59	28.482	28.746	0					8	4	2	0	0	0	0.24895	1	10444	10444		36.127	15.673	1	3475600			32342	866	20379	20491	31133	31133					-0.06711727169567894
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	HCT116MG_D190212_S2	2	1039.456298828125	1	1039.45785	1038.45057	0.68308	0.00071003	0.038082	3.9584E-05	0.72116	0.00074961	1039.4576099563394	28.91	0.40938	28.594	28.402	28.812	-0.31613					18	7	4	0	0	0	0.0034865	1	10548	10548		165.72	121.86	1	168330000			32343	866	20379	20491	31134	31134					-0.06711727169567894
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	HCT116MG_D190212_S2	2	520.2327270507812	2	520.232561	1038.45057	0.27216	0.00014159	0.061157	3.1816E-05	0.33332	0.0001734	520.2326172204134	28.881	0.20411	28.565	28.453	28.657	-0.31613					6	3	2	0	0	0	0.0201	1	10566	10566		96.367	60.24	1	27446000			32344	866	20379	20491	31135	31135					-0.06711727169567894
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	HCT116MG_D190212_S3	3	1039.4595947265625	1	1039.45785	1038.45057	0.66331	0.00068948	0.055181	5.7358E-05	0.71849	0.00074684	1039.4577905389215	28.981	0.6246	28.76	28.473	29.098	-0.22195					29	11	4	0	0	0	0.0034865	1	10482	10482		165.72	113.45	1	45592000			32345	866	20379	20491	31136	31136					-0.06711727169567894
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	HCT116MG_D190212_S3	3	520.2328491210938	2	520.232561	1038.45057	0.4146	0.00021569	-0.13349	-6.9447E-05	0.2811	0.00014624	520.2324323874508	28.929	0.41636	28.707	28.577	28.994	-0.22195					13	7	2	0	0	0	0.0201	1	10501	10501		96.367	63.581	1	8156600			32346	866	20379	20491	31137	31137					-0.06711727169567894
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	HCT116MG_D190212_S4	4	1039.45849609375	1	1039.45785	1038.45057	0.58947	0.00061273	0.30328	0.00031524	0.89275	0.00092797	1039.4580958603328	29.045	0.31167	28.704	28.522	28.834	-0.34059					13	5	3	0	0	0	0.0050238	1	10477	10477		137.42	93.566	1	6953700			32347	866	20379	20491	31138	31138					-0.06711727169567894
SVDQLCWHP	9	Unmodified	_SVDQLCWHP_					0	0	0		nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3	nc|ENSG00000051596|Q96J01-2|THOC3	nc|ENSG00000051596|Q96J01-2|THOC3	MSMS	HCT116MG_D190212_S1	1	542.7459716796875	2	542.747659	1083.48076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.482	1	19.482	18.982	19.982	0								0	0	0	0.76575	1	6758	6758		15.847	1.0089	1				32348	1058	20380	20492	31139	31139					-0.05763646985383275
SVDSNLLSDY	10	Unmodified	_SVDSNLLSDY_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MSMS	HCT116MG_D190212_S3	3	556.7591552734375	2	556.758943	1111.50333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.39	1	48.074	47.574	48.574	-0.31596								0	0	0	0.88261	1	18198	18198		18.146	6.6516	1				32349	4722	20381	20493	31140	31140					-0.047957691067495034
SVDWPESSL	9	Unmodified	_SVDWPESSL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	HCT116MG_D190212_S2	2	1019.46826171875	1	1019.46802	1018.46074	0.81591	0.00083179	0.0058304	5.9439E-06	0.82174	0.00083774	1019.4679886291359	50.455	0.93592	50.283	49.985	50.921	-0.17191					32	17	2	0	0	0	0.003294	2	19341	19341;19574		180.01	122.54	1	27172000			32350	2783	20382	20494	31141;31142	31141					-0.047751194443321765
SVDWPESSL	9	Unmodified	_SVDWPESSL_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	HCT116MG_D190212_S3	3	1019.4678344726562	1	1019.46802	1018.46074	0.5758	0.00058701	-0.05603	-5.7121E-05	0.51977	0.00052989	1019.4678800325466	50.773	1.0446	50.46	50.02	51.065	-0.31381					31	19	2	0	0	0	0.0060607	1	19121	19121		128.37	70.894	1	5648400			32351	2783	20382	20494	31143	31143					-0.047751194443321765
SVDYGQTHYY	10	Unmodified	_SVDYGQTHYY_					0	0	0		ENST00000557013.1_1_14:55168817-55201659:+|nuORF;ENST00000555112.1_1_14:55034634-55169324:+|nuORF;nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A	ENST00000557013.1_1_14:55168817-55201659:+|nuORF	ENST00000557013.1_1_14:55168817-55201659:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	616.7650756835938	2	616.76456	1231.51457	0.57615	0.00035535	-0.19248	-0.00011871	0.38367	0.00023664	616.7642764505813	31.667	0.26069	31.667	31.544	31.805	0					7	4	2	0	0	0	0.24395	1	11679	11679		55.503	40.664	1	4549700			32352	940	20383	20495	31144	31144					-0.09192947012593322
SVEDAPTPEK	10	Unmodified	_SVEDAPTPEK_					0	0	0		ENST00000549757.5_1_12:56575249-56577989:-|nuORF;SMARCC2|p.R299Wfs*3|1|0.04|ENSG00000139613|chr12:56181543-56181544|-/ATAACCA|frameshift_variant;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2	ENST00000549757.5_1_12:56575249-56577989:-|nuORF	ENST00000549757.5_1_12:56575249-56577989:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	537.80615234375	2	536.761486	1071.50842	0.40773	0.00021885	0.26152	0.00014037	0.66925	0.00035923	536.7616140737388	26.446	0.36286	26.084	25.921	26.284	-0.36164					13	6	3	0	0	0	0.76634	1	9546	9546		14.838	0.93222	1	23506000			32353	3633	20384	20496	31145	31145					-0.024474652441540456
SVEDYKALQKY	11	Unmodified	_SVEDYKALQKY_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENST00000432974.1_1_13:79483649-79483910:+|nuORF;ENST00000509846.1_1_5:10258500-10261038:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MSMS	HCT116MG_D190212_S1	1	672.3453979492188	2	672.345717	1342.67688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.215	1	32.215	31.715	32.715	0								0	0	0	0.44935	1	11880	11880		49.742	35.836	1				32354	4090	20385	20497	31146	31146					0.019250166695201187
SVEDYKALQKY	11	Unmodified	_SVEDYKALQKY_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF;nc|ENSG00000150753|P48643-2|CCT5;ENST00000432974.1_1_13:79483649-79483910:+|nuORF;ENST00000509846.1_1_5:10258500-10261038:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MSMS	HCT116MG_D190212_S2	2	672.3457641601562	2	672.345717	1342.67688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.376	1	32.146	31.646	32.646	-0.23009								0	0	0	0.60603	1	11977	11977		42.835	28.929	1				32355	4090	20385	20497	31147	31147					0.019250166695201187
SVENYTLTI	9	Unmodified	_SVENYTLTI_					0	0	0		ENST00000568777.5_1_15:72647792-72649010:-|nuORF;ENST00000569509.5_1_15:72643558-72668681:-|nuORF;ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000568777.5_1_15:72647792-72649010:-|nuORF	ENST00000568777.5_1_15:72647792-72649010:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1039.53125	1	1039.53062	1038.52334	0.81633	0.0008486	0.42535	0.00044217	1.2417	0.0012908	1039.5314771260958	52.047	0.31229	52.047	51.916	52.228	0					9	5	2	0	0	0	0.01389	1	19926	19926		103.75	28.819	1	20624000			32356	6416	20386	20498	31148	31148					0.005620266238793192
SVENYTLTI	9	Unmodified	_SVENYTLTI_					0	0	0		ENST00000568777.5_1_15:72647792-72649010:-|nuORF;ENST00000569509.5_1_15:72643558-72668681:-|nuORF;ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000568777.5_1_15:72647792-72649010:-|nuORF	ENST00000568777.5_1_15:72647792-72649010:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1039.53062	1038.52334	0.90645	0.00094228	-0.22515	-0.00023405	0.68131	0.00070824	1039.5302060787628	52.355	0.41275	52.168	51.986	52.399	-0.18725	0.060268	-2.6042E-05	NaN	103.75	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93528000			32357	6416	20386	20498							0.005620266238793192
SVFCCCCCCS	10	Unmodified	_SVFCCCCCCS_					0	0	0		ENSG00000074966|ENST00000264316|TXK;ENST00000510457.1_1_4:48091737-48136211:-|nuORF	ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	MSMS	HCT116MG_D190212_S4	4	528.8034057617188	2	529.140555	1056.26656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.561	1	24.292	23.792	24.792	-0.26881								0	0	0	0.9696	1	8660	8660		0.35063	0.35063	1				32358	1305	20387	20499	31149	31149					-0.25932641055464956
SVFGVQVNIP	10	Unmodified	_SVFGVQVNIP_					0	0	0			REV__ENSG00000176635|ENST00000336726|HORMAD2	REV__ENSG00000176635|ENST00000336726|HORMAD2	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2951049804688	2	530.295299	1058.57605	0.5645	0.00029935	-0.063969	-3.3922E-05	0.50053	0.00026543	530.2951290527749	28.839	0.63016	28.839	28.482	29.112	0					31	11	4	0	0	0	0.40515	1	10440	10440		41.84	1.8823	1	31006000	+		32359	13549	20388	20500	31150	31150					0.049100294773325004
SVFWSLPAF	9	Unmodified	_SVFWSLPAF_					0	0	0		ENST00000541377.5_1_2:122098285-122098420:-|nuORF	ENST00000541377.5_1_2:122098285-122098420:-|nuORF	ENST00000541377.5_1_2:122098285-122098420:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	352.1865234375	3	351.851649	1052.53312	-0.10895	-3.8336E-05	0.9687	0.00034084	0.85975	0.0003025	352.1864968869606	35.616	0.4112	35.473	35.283	35.695	-0.14245					11	7	2	0	0	0	0.57626	1	13303	13303		8.1555	2.8586	1	26438000			32360	8694	20389	20501	31151	31151					0.008952594198945008
SVGAAWSGP	9	Unmodified	_SVGAAWSGP_					0	0	0			REV__ENST00000334976.10_2_19:50992738-50993161:+|nuORF	REV__ENST00000334976.10_2_19:50992738-50993161:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	831.4002075195312	1	831.399544	830.392267	0.71596	0.00059525	-0.38431	-0.00031952	0.33164	0.00027573	831.399026358497	28.095	0.46934	27.907	27.673	28.142	-0.18847					15	8	2	0	0	0	0.12994	1	10164	10164		52.268	6.2474	1	5580000	+		32361	14945	20390	20502	31152	31152					-0.029713192335179883
SVGAAYLESLP	11	Unmodified	_SVGAAYLESLP_					0	0	0		nc|ENSG00000120949|P28908-2|TNFRSF8;nc|ENSG00000120949|P28908-3|TNFRSF8;ENSG00000120949|ENST00000263932|TNFRSF8	nc|ENSG00000120949|P28908-2|TNFRSF8	nc|ENSG00000120949|P28908-2|TNFRSF8	MSMS	HCT116MG_D190212_S4	4	553.79052734375	2	553.790047	1105.56554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.355	1	37.972	37.472	38.472	-0.38283								0	0	0	0.82946	1	14054	14054		29.082	2.8134	1				32362	2719	20391	20503	31153	31153					0.01698002032230761
SVGADSWKSNS	11	Unmodified	_SVGADSWKSNS_					0	0	0		ENST00000556551.2_1_14:74398240-74398279:+|nuORF	ENST00000556551.2_1_14:74398240-74398279:+|nuORF	ENST00000556551.2_1_14:74398240-74398279:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	569.261962890625	2	569.262185	1136.50982	0.31557	0.00017964	0.57259	0.00032595	0.88816	0.0005056	569.2624444115273	21.148	0.41697	21.175	20.914	21.331	0.026411					12	7	2	0	0	0	0.70073	1	7343	7343		21.537	0	1	4586100			32363	8789	20392	20504	31154	31154					-0.052978311553715685
SVGAPRRIPPP	11	Unmodified	_SVGAPRRIPPP_					0	0	0		nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	MULTI-MSMS	HCT116MG_D190212_S3	3	383.1960754394531	3	382.896252	1145.66693	-0.016727	-6.4048E-06	0.13141	5.0316E-05	0.11468	4.3911E-05	382.89604991134274	24.763	0.25996	24.679	24.549	24.809	-0.083694					9	4	3	0	0	0	0.74191	1	8760	8760		4.7159	0.83959	1	14144000			32364	9675	20393	20505	31155	31155					0.09991918245464149
SVGDEALVTG	10	Unmodified	_SVGDEALVTG_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MULTI-MSMS	HCT116MG_D190212_S2	2	474.2378234863281	2	474.237647	946.460741	0.24026	0.00011394	-0.089265	-4.2333E-05	0.151	7.1609E-05	474.23749316809284	19.335	0.41704	18.966	18.627	19.044	-0.3695					13	7	3	0	0	0	0.28012	1	6726	6726		52.268	2.3353	1	8393100	+		32365	13329	20394	20506	31156	31156					-0.014631194443154527
SVGDEALVTG	10	Unmodified	_SVGDEALVTG_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MSMS	HCT116MG_D190212_S3	3	474.23773193359375	2	474.237647	946.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.591	1	18.664	18.164	19.164	0.073666								0	0	0	0.72975	1	6323	6323		36.127	1.7253	1		+		32366	13329	20394	20506	31157	31157					-0.014631194443154527
SVGDRDPG	8	Unmodified	_SVGDRDPG_					0	0	0			REV__ENST00000427998.5_1_1:995191-995768:+|nuORF	REV__ENST00000427998.5_1_1:995191-995768:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	402.2037658691406	2	401.688124	801.361695	-0.15263	-6.1309E-05	0.60011	0.00024106	0.44748	0.00017975	401.6883664996989	15.945	0.15661	15.611	15.533	15.689	-0.33451					4	2	2	0	0	0	0.40176	1	5352	5352		49.933	0	1	991910	+		32367	15567	20395	20507	31158	31158					-0.04693097618564934
SVGDRSPHEA	10	Unmodified	_SVGDRSPHEA_					0	0	0			REV__ENST00000559095.1_1_15:49462519-49486129:+|nuORF	REV__ENST00000559095.1_1_15:49462519-49486129:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	527.7489624023438	2	527.749244	1053.48394	0.33866	0.00017873	-0.40611	-0.00021433	-0.067451	-3.5597E-05	527.7488308829738	15.807	0.15614	15.807	15.692	15.848	0					4	2	2	0	0	0	0.69965	1	5292	5292		20.415	2.2682	1	1929200	+		32368	16476	20396	20508	31159	31159					-0.040666806070021266
SVGDVSYGSH	10	Unmodified	_SVGDVSYGSH_					0	0	0			REV__nc|ENSG00000215568|Q2WGN9|GAB4	REV__nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-SECPEP	HCT116MG_D190212_S3	3	504.7411193847656	2	504.225071	1006.43559	0.33287	0.00016784	-0.23827	-0.00012014	0.094599	4.7699E-05	504.22482334683826	18.886	0.57253	18.956	18.563	19.135	0.069159					15	10	2	0	0	0	0.28843	1	6389	6389		8.7454	0	1	2227700	+		32369	17292	20397	20509	31160	31160					-0.06737174246882205
SVGERYLLARQ	11	Unmodified	_SVGERYLLARQ_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MSMS	HCT116MG_D190212_S1	1	646.3601684570312	2	646.359493	1290.70443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.178	1	27.178	26.678	27.678	0								0	0	0	0.95196	1	9851	9851		5.2969	0	1		+		32370	14040	20398	20510	31161	31161					0.07070964720401207
SVGGAAGWQRE	11	Unmodified	_SVGGAAGWQRE_					0	0	0		ENST00000481434.5_1_7:151372433-151573717:-|nuORF	ENST00000481434.5_1_7:151372433-151573717:-|nuORF	ENST00000481434.5_1_7:151372433-151573717:-|nuORF	MSMS	HCT116MG_D190212_S4	4	559.2211303710938	2	559.272887	1116.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.115	1	22.877	22.377	23.377	-0.23758								0	0	0	0.87044	1	8077	8077		23.801	6.3584	1				32371	8248	20399	20511	31162	31162					-0.0223840133601243
SVGGAKYLPFP	11	Unmodified	_SVGGAKYLPFP_					0	0	0		nc|ENSG00000187010|Q02161-2|RHD	nc|ENSG00000187010|Q02161-2|RHD	nc|ENSG00000187010|Q02161-2|RHD	MSMS	HCT116MG_D190212_S3	3	568.30908203125	2	568.310949	1134.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.566	1	21.585	21.085	22.085	0.018446								0	0	0	0.91433	1	7521	7521		18.146	1.0335	1				32372	9584	20400	20512	31163	31163					0.04542602511401128
SVGGIHESPR	10	Unmodified	_SVGGIHESPR_					0	0	0		ZNF280B|p.N166H|1|0.52|ENSG00000275004|chr22:22488903-22488903|T/G|missense_variant	ZNF280B|p.N166H|1|0.52|ENSG00000275004|chr22:22488903-22488903|T/G|missense_variant	ZNF280B|p.N166H|1|0.52|ENSG00000275004|chr22:22488903-22488903|T/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	519.7698364257812	2	519.76998	1037.52541	-0.14367	-7.4677E-05	0.74906	0.00038934	0.60539	0.00031466	519.770454441669	17.044	0.3104	16.878	16.712	17.022	-0.16664					9	5	2	0	0	0	0.67188	1	5647	5647		22.736	2.3217	1	852950			32373	18723	20401	20513	31164	31164					0.008145001523189421
SVGGLKDERDC	11	Unmodified	_SVGGLKDERDC_					0	0	0			REV__ENST00000563332.6_1_16:4562186-4562369:-|nuORF	REV__ENST00000563332.6_1_16:4562186-4562369:-|nuORF	MSMS	HCT116MG_D190212_S3	3	589.7753295898438	2	589.777145	1177.53974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.613	1	27.425	26.925	27.925	-0.18847								0	0	0	0.92235	1	9959	9959		17.113	3.2068	1		+		32374	16510	20402	20514	31165	31165					-0.041932154816777256
SVGKEDFEKV	10	Unmodified	_SVGKEDFEKV_					0	0	0		nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1;COL22A1|p.L1298Ffs*130|1|0.28|ENSG00000169436|chr8:138616034-138616034|C/-|frameshift_variant;COL22A1|p.I680Nfs*21|1|0.2|ENSG00000169436|chr8:138751504-138751505|-/T|frameshift_variant	nc|ENSG00000169436|Q8NFW1-3|COL22A1	nc|ENSG00000169436|Q8NFW1-3|COL22A1	MULTI-SECPEP	HCT116MG_D190212_S3	3	379.70550537109375	3	379.864394	1136.57135	0.036574	1.3893E-05	-0.048247	-1.8327E-05	-0.011673	-4.434E-06	379.86427290011596	27.783	0.25989	27.595	27.465	27.725	-0.18847					10	4	3	0	0	0	0.27616	1	10020	10020		12.856	5.3789	1	18393000			32375	5074	20403	20515	31166	31166					0.008531005438726424
SVGKFIEMGFI	11	Unmodified	_SVGKFIEMGFI_					0	0	0		chr2:162183468-162184584|167|18.94|0.03|9.26|-|1|FAP,None|1	chr2:162183468-162184584|167|18.94|0.03|9.26|-|1|FAP,None|1	chr2:162183468-162184584|167|18.94|0.03|9.26|-|1|FAP,None|1	MSMS	HCT116MG_D190212_S4	4	614.3269653320312	2	614.325742	1226.63693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.829	1	31.453	30.953	31.953	-0.37529								0	0	0	0.94755	1	11568	11568		7.609	0	1				32376	453	20404	20516	31167	31167					0.03267798465276428
SVGKLLIR	8	Unmodified	_SVGKLLIR_					0	0	0		ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	885.5895385742188	1	885.588013	884.580737	0.81137	0.00071854	1.0164	0.00090007	1.8277	0.0016186	885.5883997574281	41.211	0.2603	41.211	41.133	41.393	0					6	4	2	0	0	0	0.6854	1	15544	15544		24.674	6.5389	1	9200100			32377	7690	20405	20517	31168	31168					0.13382958410750234
SVGKWQDRY	9	Unmodified	_SVGKWQDRY_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;FIP1L1|p.R473Lfs*2|1|0.5|ENSG00000145216|chr4:53453051-53453052|-/T|frameshift_variant;FIP1L1|p.D472Efs*3|1|0.45|ENSG00000145216|chr4:53453049-53453050|-/G|frameshift_variant;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MSMS	HCT116MG_D190212_S2	2	569.7869262695312	2	569.78563	1137.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.381	1	28.051	27.551	28.551	-0.32987								0	0	0	0.76592	1	10350	10350		15.847	1.0089	1				32378	3899	20406	20518	31169	31169					-0.0065692681357631955
SVGLHKKVPV	10	Unmodified	_SVGLHKKVPV_					0	0	0		ENST00000325147.13_1_11:204409-204613:-|nuORF	ENST00000325147.13_1_11:204409-204613:-|nuORF	ENST00000325147.13_1_11:204409-204613:-|nuORF	MSMS	HCT116MG_D190212_S4	4	532.3331909179688	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.976	1	29.618	29.118	30.118	-0.3571								0	0	0	0.95507	1	10848	10848		3.5965	0.31518	1				32379	7131	20407	20519	31170	31170					0.12614301502276248
SVGLLLYYFVH	11	Unmodified	_SVGLLLYYFVH_					0	0	0			REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	655.8618774414062	2	655.860806	1309.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.92	1	34.762	34.262	35.262	-0.15834								0	0	0	0.94538	1	13008	13008		8.7454	0	1		+		32380	17052	20408	20520	31171	31171					0.06459420125361248
SVGPPDESHP	10	Unmodified	_SVGPPDESHP_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-MSMS	HCT116MG_D190212_S4	4	511.2330322265625	2	511.232896	1020.45124	0.22984	0.0001175	-0.68475	-0.00035007	-0.45491	-0.00023257	511.23273822616693	21.172	1.0901	20.963	20.448	21.538	-0.20959					34	20	2	0	0	0	0.71349	1	7440	7440		19.257	2.1441	1	4592300			32381	2172	20409	20521	31172	31172					-0.058168877298498955
SVGPTEQPWST	11	Unmodified	_SVGPTEQPWST_					0	0	0		ENST00000439129.5_2_22:42532359-42532542:+|nuORF	ENST00000439129.5_2_22:42532359-42532542:+|nuORF	ENST00000439129.5_2_22:42532359-42532542:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	594.3377685546875	2	594.78021	1187.54587	0.58529	0.00034812	-2.1025	-0.0012505	-1.5172	-0.0009024	594.7784381500421	18.832	0.26028	18.901	18.667	18.927	0.069159					5	4	2	0	0	0	0.36397	1	6329	6329		2.7352	0	1	1104200			32382	7908	20410	20522	31173	31173					-0.04040373978523348
SVGPVGPA	8	Unmodified	_SVGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	683.3726196289062	1	683.372266	682.36499	1.063	0.00072645	-0.25633	-0.00017517	0.80671	0.00055128	683.3719597142665	29.031	0.41636	28.809	28.577	28.994	-0.22196					15	7	3	0	0	0	0.13911	1	10516	10516		86.121	0	1	22785000			32383	4715	20411	20523	31174	31174					0.011101972260917137
SVGPVGPA	8	Unmodified	_SVGPVGPA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	683.3723754882812	1	683.372266	682.36499	0.68147	0.0004657	-0.012042	-8.2294E-06	0.66943	0.00045747	683.3720536574485	29.145	0.46727	28.805	28.626	29.093	-0.34059					16	8	3	0	0	0	0.13911	1	10497	10497		86.121	3.1818	1	18900000			32384	4715	20411	20523	31175	31175					0.011101972260917137
SVGPVGPAGPI	11	Unmodified	_SVGPVGPAGPI_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MSMS	HCT116MG_D190212_S4	4	475.7681884765625	2	475.768917	949.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.933	1	42.558	42.058	43.058	-0.37493								0	0	0	0.91433	1	15798	15798		18.146	0.011366	1				32385	4715	20412	20524	31176	31176					0.04650071414528156
SVGQSTADEV	10	Unmodified	_SVGQSTADEV_					0	0	0		ENST00000176763.9_1_5:171471326-171471623:-|nuORF	ENST00000176763.9_1_5:171471326-171471623:-|nuORF	ENST00000176763.9_1_5:171471326-171471623:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	497.2594299316406	2	496.730186	991.445819	0.4882	0.0002425	0.88573	0.00043997	1.3739	0.00068247	496.73072788485456	20.485	0.15642	20.485	20.383	20.54	0					4	2	2	0	0	0	0.30738	1	7125	7125		5.7319	1.7875	1	1137500			32386	6718	20413	20525	31177	31177					-0.05024611312330762
SVGRVFAT	8	Unmodified	_SVGRVFAT_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MSMS	HCT116MG_D190212_S1	1	418.73486328125	2	418.734877	835.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.983	1	20.983	20.483	21.483	0								0	0	0	0.2263	1	7363	7363		64.236	0	1				32387	4842	20414	20526	31178	31178					0.030892465545093728
SVGSLPASNM	10	Unmodified	_SVGSLPASNM_					0	0	0		ENST00000519181.5_1_8:103989824-103990052:+|nuORF	ENST00000519181.5_1_8:103989824-103990052:+|nuORF	ENST00000519181.5_1_8:103989824-103990052:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	481.26373291015625	2	481.734217	961.453881	0.38994	0.00018785	0.0026268	1.2654E-06	0.39257	0.00018911	481.7341437907909	29.719	0.30996	29.418	29.237	29.547	-0.30095					9	5	2	0	0	0	0.20296	1	10924	10924		62.573	0.97078	1	14161000			32388	8545	20415	20527	31179	31179					-0.028387555965423417
SVGVWGHVFM	10	Unmodified	_SVGVWGHVFM_					0	0	0		tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	tr|U7SNA1|U7SNA1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01763PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	559.7760620117188	2	559.776219	1117.53789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.451	1	21.233	20.733	21.733	-0.21832								0	0	0	0.85468	1	7406	7406		21.747	5.8995	1				32389	18360	20416	20528	31180	31180					-0.016181797089984684
SVGYPHPDWI	10	Unmodified	_SVGYPHPDWI_					0	0	0		nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000565325.5_1_15:73854253-73925580:-|nuORF	nc|ENSG00000156642|Q9Y639-3|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	MULTI-MSMS	HCT116MG_D190212_S3	3	585.7822875976562	2	585.782556	1169.55056	0.33846	0.00019826	-0.36258	-0.0002124	-0.024123	-1.4131E-05	585.7823647780647	21.12	0.93758	21.155	20.402	21.339	0.034473					37	17	3	0	0	0	0.76634	1	7178	7178		14.838	0.93222	1	6531500			32390	4292	20417	20529	31181	31181					-0.027434450450982695
SVHEPAGLP	9	Unmodified	_SVHEPAGLP_					0	0	0			REV__nc|ENSG00000080503|P51531-2|SMARCA2	REV__nc|ENSG00000080503|P51531-2|SMARCA2	MSMS	HCT116MG_D190212_S3	3	453.7377624511719	2	453.737617	905.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.864	1	29.627	29.127	30.127	-0.23655								0	0	0	0.084787	1	10864	10864		60.39	15.983	1		+		32391	10862	20418	20530	31182	31182					0.004169253463260247
SVHEPAGLP	9	Unmodified	_SVHEPAGLP_					0	0	0			REV__nc|ENSG00000080503|P51531-2|SMARCA2	REV__nc|ENSG00000080503|P51531-2|SMARCA2	MSMS	HCT116MG_D190212_S4	4	453.737548828125	2	453.737617	905.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.829	1	29.479	28.979	29.979	-0.34993								0	0	0	0.3563	1	10788	10788		36.044	3.7387	1		+		32392	10862	20418	20530	31183	31183					0.004169253463260247
SVHKGFAFV	9	Unmodified	_SVHKGFAFV_					0	0	0		HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;ENST00000556181.1_1_14:58987979-58988105:+|nuORF	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	496.2718200683594	2	496.271627	990.528701	0.092259	4.5785E-05	-0.26823	-0.00013311	-0.17597	-8.7327E-05	496.27131988705753	40.488	0.25903	40.488	40.332	40.591	0					9	4	3	0	0	0	0.040027	1	15231	15231		79.596	50.515	1	24514000			32393	1576	20419	20531	31184	31184					0.03305794997004341
SVHKGFAFV	9	Unmodified	_SVHKGFAFV_					0	0	0		HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;ENST00000556181.1_1_14:58987979-58988105:+|nuORF	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	496.2718811035156	2	496.271627	990.528701	0.52224	0.00025917	-0.4032	-0.0002001	0.11903	5.9073E-05	496.27131900048687	40.509	0.36129	40.44	40.261	40.622	-0.069626					16	6	4	0	0	0	0.026999	1	15273	15273		89.401	60.319	1	72712000			32394	1576	20419	20531	31185	31185					0.03305794997004341
SVHNILGMTK	10	Unmodified	_SVHNILGMTK_					0	0	0			REV__tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	REV__tr|U7SYY2|U7SYY2_FUSNUHeat-inducibletranscriptionrepressorHrcAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hrcAPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	550.298828125	2	550.300059	1098.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.791	1	19.597	19.097	20.097	-0.19367								0	0	0	0.93202	1	6735	6735		8.7454	2.0222	1		+		32395	17873	20420	20532	31186	31186					0.04021474491196386
SVIDHIHLI	9	Unmodified	_SVIDHIHLI_					0	0	0		nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000123159|ENST00000393033|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	MSMS	HCT116MG_D190212_S1	1	523.802978515625	2	523.803291	1045.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.231	1	49.231	48.731	49.731	0								0	0	0	0.32965	1	18753	18753		37.974	17.103	1				32396	2793	20421	20533	31187	31187					0.07105735714230832
SVIDHIHLI	9	Unmodified	_SVIDHIHLI_					0	0	0		nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000123159|ENST00000393033|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	MULTI-MSMS	HCT116MG_D190212_S2	2	523.8038940429688	2	523.803291	1045.59203	0.29606	0.00015508	0.22561	0.00011817	0.52167	0.00027325	523.8035012264282	49.215	0.20204	49.061	48.935	49.137	-0.15405					5	3	2	0	0	0	0.0082751	1	18857	18857		117.6	81.472	1	50283000			32397	2793	20421	20533	31188	31188					0.07105735714230832
SVIDHIHLI	9	Unmodified	_SVIDHIHLI_					0	0	0		nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000123159|ENST00000393033|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	nc|ENSG00000123159|O14908-2|GIPC1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	523.803291	1045.59203	0.31166	0.00016325	-0.46585	-0.00024402	-0.1542	-8.0769E-05	523.8026664923387	49.157	0.26057	49.157	48.922	49.183	0	0.048071	-0.00052556	NaN	117.6	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17580000			32398	2793	20421	20533							0.07105735714230832
SVIEQIVYV	9	Unmodified	_SVIEQIVYV_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S2	2	1049.5897216796875	1	1049.58774	1048.58046	0.70323	0.0007381	0.90625	0.00095119	1.6095	0.0016893	1049.5887744713455	55.436	0.20455	55.25	55.123	55.327	-0.18565					5	3	2	0	0	0	0.035349	1	21393	21393		81.89	25.713	1	31576000			32399	1349	20422	20534	31189	31189					0.05811493900228015
SVILKKSYY	9	Unmodified	_SVILKKSYY_					0	0	0		tr|U7SLT5|U7SLT5_FUSNUCRISPR-associatedproteincas5,subtypeI-b/hmariOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02171PE=4SV=1	tr|U7SLT5|U7SLT5_FUSNUCRISPR-associatedproteincas5,subtypeI-b/hmariOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02171PE=4SV=1	tr|U7SLT5|U7SLT5_FUSNUCRISPR-associatedproteincas5,subtypeI-b/hmariOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02171PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	550.8200073242188	2	550.82115	1099.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.115	1	13.115	12.615	13.615	0								0	0	0	0.77008	1	4245	4245		0.6015	0.14316	1				32400	18342	20423	20535	31190	31190					0.08191773171211025
SVIQAQLP	8	Unmodified	_SVIQAQLP_					0	0	0		ENST00000468428.1_1_20:17594397-17594817:-|nuORF	ENST00000468428.1_1_20:17594397-17594817:-|nuORF	ENST00000468428.1_1_20:17594397-17594817:-|nuORF	MSMS	HCT116MG_D190212_S4	4	428.24932861328125	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.245	1	50.895	50.395	51.395	-0.35028								0	0	0	0.8837	1	19066	19066		2.0598	0	1				32401	8127	20424	20536	31191	31191					0.053103998687561216
SVIRGPWW	8	Unmodified	_SVIRGPWW_					0	0	0			REV__nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	REV__nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	MSMS	HCT116MG_D190212_S2	2	500.4700927734375	2	500.771794	999.529036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.597	1	48.453	47.953	48.953	-0.1437								0	0	0	0.8837	1	18572	18572		11.64	0.52583	1		+		32402	11671	20425	20537	31192	31192					0.029252147168449483
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;HDLBP|p.T180Lfs*48|1|0.33|ENSG00000115677|chr2:241256719-241256719|T/-|frameshift_variant	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S1	1	515.2901000976562	2	515.290017	1028.56548	0.4944	0.00025476	-0.057243	-2.9497E-05	0.43716	0.00022526	515.2900123574445	54.612	0.15237	54.612	54.536	54.688	0					4	2	2	0	0	0	0.11731	1	20973	20973		54.774	14.824	1	49491000			32403	2480	20426	20538	31193	31193					0.05234046822897653
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant;HDLBP|p.T180Lfs*48|1|0.33|ENSG00000115677|chr2:241256719-241256719|T/-|frameshift_variant	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S2	2	515.2901000976562	2	515.290017	1028.56548	0.21137	0.00010892	-0.33256	-0.00017137	-0.12119	-6.245E-05	515.2898384856711	54.824	0.40911	54.636	54.509	54.918	-0.18797					11	7	2	0	0	0	0.031089	1	21125	21125		85.272	39.251	1	154080000			32404	2480	20426	20538	31194	31194					0.05234046822897653
SVKASSRLKP	10	Unmodified	_SVKASSRLKP_					0	0	0			REV__ENST00000371250.3_1_1:57044917-57045127:-|nuORF	REV__ENST00000371250.3_1_1:57044917-57045127:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	536.9620971679688	2	536.827298	1071.64004	0.48892	0.00026247	0.47703	0.00025608	0.96595	0.00051855	536.8273201710095	17.144	0.20832	16.795	16.665	16.873	-0.34933					7	3	3	0	0	0	0.87949	1	5773	5773		6.7232	0.51738	1	11371000	+		32405	15163	20427	20539	31195	31195					0.10708809634274985
SVKGSTML	8	Unmodified	_SVKGSTML_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	HCT116MG_D190212_S2	2	822.4402465820312	1	822.438966	821.431689	0.94055	0.00077354	0.81095	0.00066696	1.7515	0.0014405	822.4393864647757	57.67	0.25834	57.495	57.315	57.574	-0.17494					10	4	3	0	0	0	0.79834	1	22274	22274		11.64	0	1	58867000	+		32406	10608	20428	20540	31196	31196					0.013830647256895645
SVKLVLYRVPF	11	Unmodified	_SVKLVLYRVPF_					0	0	0			REV__ENST00000419744.1_2_2:27435794-27435881:+|nuORF	REV__ENST00000419744.1_2_2:27435794-27435881:+|nuORF	MSMS	HCT116MG_D190212_S3	3	660.9085083007812	2	660.905548	1319.79654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.921	1	54.629	54.129	55.129	-0.29251								0	0	0	0.95023	1	20822	20822		6.2058	0.47393	1		+		32407	15511	20429	20541	31197	31197					0.1494367480472647
SVLAAESPAA	10	Unmodified	_SVLAAESPAA_					0	0	0			REV__ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	REV__ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	458.2426452636719	2	458.242732	914.470912	0.11346	5.1994E-05	0.14873	6.8156E-05	0.2622	0.00012015	458.2427074239609	23.605	0.41529	23.221	22.988	23.403	-0.38324					12	7	2	0	0	0	0.042873	1	8405	8405		92.491	2.3565	1	51353000	+		32408	9821	20430	20542	31198	31198					0.010254882808908405
SVLAPALA	8	Unmodified	_SVLAPALA_					0	0	0		ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	MSMS	HCT116MG_D190212_S3	3	371.2272644042969	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.435	1	41.133	40.633	41.633	-0.30185								0	0	0	0.8837	1	15414	15414		0.69038	0	1				32409	3083	20431	20543	31199	31199					0.06263629811303417
SVLAPALA	8	Unmodified	_SVLAPALA_					0	0	0		ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	MSMS	HCT116MG_D190212_S4	4	371.22735595703125	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.042	1	44.669	44.169	45.169	-0.3732								0	0	0	0.8837	1	16601	16601		0.69038	0	1				32410	3083	20431	20543	31200	31200					0.06263629811303417
SVLDQKILL	9	Unmodified	_SVLDQKILL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S1	1	514.821533203125	2	514.82115	1027.62775	0.33152	0.00017067	0.38088	0.00019609	0.7124	0.00036676	514.8211495709621	51.808	0.26355	51.808	51.652	51.916	0					9	4	3	0	0	0	0.0063854	1	19823	19823		125.53	43	1	16850000			32411	3750	20432	20544	31201	31201					0.11503773171239118
SVLDQKILL	9	Unmodified	_SVLDQKILL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	HCT116MG_D190212_S2	2	514.8211059570312	2	514.82115	1027.62775	0.40024	0.00020605	-0.1092	-5.6216E-05	0.29104	0.00014983	514.8211133503648	51.99	0.3608	51.806	51.629	51.99	-0.18369					14	6	3	0	0	0	0.0063854	1	19965	19965		125.53	53.607	1	44995000			32412	3750	20432	20544	31202	31202					0.11503773171239118
SVLDSTAKV	9	Unmodified	_SVLDSTAKV_					0	0	0		TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant;nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;TBC1D8B|p.F1096Lfs*5|1|0.14|ENSG00000133138|chrX:106873885-106873885|T/-|frameshift_variant;ENSG00000133138|ENST00000357242|TBC1D8B	TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant	TBC1D8B|p.V302Kfs*5|1|0.05|ENSG00000133138|chrX:106826105-106826106|-/AAAATGG|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	460.2752990722656	2	460.258382	918.502212	0.23724	0.00010919	-0.33346	-0.00015348	-0.09622	-4.4286E-05	460.25833583988606	32.771	0.20789	32.56	32.43	32.638	-0.21135					5	3	2	0	0	0	0.25347	1	12153	12153		10.074	3.3508	1	7482900			32413	3231	20433	20545	31203	31203					0.039700613149989294
SVLGAITSV	9	Unmodified	_SVLGAITSV_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	HCT116MG_D190212_S1	1	846.4930419921875	1	846.49311	845.485833	0.88628	0.00075023	-0.24281	-0.00020554	0.64347	0.00054469	846.492703832893	53.23	0.25686	53.23	53.102	53.359	0					11	4	3	0	0	0	0.020181	1	20388	20388		96.285	3.4626	1	76400000			32414	2710	20434	20546	31204	31204					0.05690980148892777
SVLGAITSV	9	Unmodified	_SVLGAITSV_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	HCT116MG_D190212_S2	2	846.4947509765625	1	846.49311	845.485833	0.597	0.00050536	0.012484	1.0568E-05	0.60949	0.00051593	846.4930464630676	53.489	0.35969	53.3	53.121	53.48	-0.1894					14	6	3	0	0	0	0.020181	1	20564	20564		96.285	3.4626	1	99464000			32415	2710	20434	20546	31205	31205					0.05690980148892777
SVLGAITSV	9	Unmodified	_SVLGAITSV_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ETF1|p.G304Wfs*3|1|0.05|ENSG00000120705|chr5:138511153-138511154|-/A|frameshift_variant	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	HCT116MG_D190212_S3	3	846.493896484375	1	846.49311	845.485833	0.79376	0.00067191	0.20069	0.00016989	0.99445	0.0008418	846.493157512129	53.689	0.26141	53.39	53.248	53.509	-0.29946					7	4	2	0	0	0	0.0090481	1	20328	20328		115.69	22.87	1	4740300			32416	2710	20434	20546	31206	31206					0.05690980148892777
SVLGKIWKL	9	Unmodified	_SVLGKIWKL_					0	0	0		ENSG00000103966|ENST00000220325|EHD4;ENSG00000013016|ENST00000322054|EHD3	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	HCT116MG_D190212_S2	2	522.33447265625	2	522.334227	1042.6539	0.44426	0.00023205	0.44329	0.00023154	0.88755	0.0004636	522.3344136056362	51.736	0.25577	51.553	51.424	51.68	-0.18369					8	4	2	0	0	0	0.1535	1	19888	19888		47.594	28.337	1	15742000			32417	1911	20435	20547	31207	31207					0.13428087133365807
SVLGQLGITK	10	Unmodified	_SVLGQLGITK_					0	0	0		nc|ENSG00000197249|P01009-2|SERPINA1;SERPINA1|p.T369Rfs*3|1|0.05|ENSG00000197249|chr14:94378605-94378606|-/CCCC|frameshift_variant;SERPINA1|p.L377*|1|0.19|ENSG00000197249|chr14:94378576-94378576|A/-|frameshift_variant;ENSG00000197249|ENST00000393087|SERPINA1;ENST00000489769.1_1_14:94844788-94846995:-|nuORF	nc|ENSG00000197249|P01009-2|SERPINA1	nc|ENSG00000197249|P01009-2|SERPINA1	MSMS	HCT116MG_D190212_S4	4	508.3112487792969	2	508.310949	1014.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.395	1	46.024	45.524	46.524	-0.37134								0	0	0	0.81326	1	17128	17128		27.088	5.5514	1				32418	6130	20436	20548	31208	31208					0.10062602511402474
SVLGSLSSV	9	Unmodified	_SVLGSLSSV_					0	0	0		ENST00000556933.1_1_14:65067322-65068336:-|nuORF;ENST00000502634.1_1_5:20304521-20305535:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50;ENST00000469163.1_1_22:45574147-45579448:+|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	848.47265625	1	848.472374	847.465098	0.58754	0.00049851	0.034287	2.9092E-05	0.62182	0.0005276	848.4721645372085	50.343	0.30915	50.343	50.214	50.523	0					8	5	2	0	0	0	0.020181	1	19208	19208		96.285	3.4626	1	28659000			32419	1592	20437	20549	31209	31209					0.03526389769228899
SVLGSLSSV	9	Unmodified	_SVLGSLSSV_					0	0	0		ENST00000556933.1_1_14:65067322-65068336:-|nuORF;ENST00000502634.1_1_5:20304521-20305535:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50;ENST00000469163.1_1_22:45574147-45579448:+|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	848.4730224609375	1	848.472374	847.465098	0.82287	0.00069818	0.20926	0.00017755	1.0321	0.00087574	848.4725291878021	50.496	0.36737	50.325	50.191	50.558	-0.1719					12	6	3	0	0	0	0.0060607	1	19355	19355		128.37	7.915	1	95475000			32420	1592	20437	20549	31210	31210					0.03526389769228899
SVLGSLSSV	9	Unmodified	_SVLGSLSSV_					0	0	0		ENST00000556933.1_1_14:65067322-65068336:-|nuORF;ENST00000502634.1_1_5:20304521-20305535:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50;ENST00000469163.1_1_22:45574147-45579448:+|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	848.4737548828125	1	848.472374	847.465098	0.6659	0.000565	0.47281	0.00040116	1.1387	0.00096616	848.4731476399595	50.673	0.20889	50.36	50.281	50.49	-0.31381					5	3	2	0	0	0	0.012168	1	19140	19140		108	19.093	1	4078900			32421	1592	20437	20549	31211	31211					0.03526389769228899
SVLIFLVYFL	10	Unmodified	_SVLIFLVYFL_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MSMS	HCT116MG_D190212_S1	1	405.2456359863281	3	405.245888	1212.71583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.352	1	51.352	50.852	51.852	0								0	0	0	0.96291	1	19617	19617		0.77653	0	1				32422	3358	20438	20550	31212	31212					0.1179839376181917
SVLKSIQEV	9	Unmodified	_SVLKSIQEV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	HCT116MG_D190212_S1	1	501.7952880859375	2	501.795132	1001.57571	0.17721	8.8925E-05	0.25632	0.00012862	0.43353	0.00021754	501.7952425750183	39.579	0.20887	39.579	39.501	39.709	0					6	3	2	0	0	0	0.0046822	1	14877	14877		140.63	54.992	1	12575000			32423	997	20439	20551	31213	31213					0.07498609757476515
SVLKSIQEV	9	Unmodified	_SVLKSIQEV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	HCT116MG_D190212_S2	2	501.79571533203125	2	501.795132	1001.57571	0.34476	0.000173	0.12238	6.1409E-05	0.46714	0.00023441	501.7952810357429	39.67	0.20275	39.592	39.428	39.631	-0.077835					8	3	3	0	0	0	0.00446	1	14936	14936		143.91	54.508	1	28321000			32424	997	20439	20551	31214	31214					0.07498609757476515
SVLRLKPPPG	10	Unmodified	_SVLRLKPPPG_					0	0	0		ENSG00000197646|ENST00000397747|PDCD1LG2	ENSG00000197646|ENST00000397747|PDCD1LG2	ENSG00000197646|ENST00000397747|PDCD1LG2	MSMS	HCT116MG_D190212_S4	4	532.3326416015625	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.36	1	38.98	38.48	39.48	-0.38055								0	0	0	0.95351	1	14459	14459		3.9444	0.3479	1				32425	6163	20440	20552	31215	31215					0.12614301502276248
SVLRPMPL	8	Unmodified	_SVLRPMPL_					0	0	0			REV__PXDN|p.C857Afs*5|2|0.33|ENSG00000130508|chr2:1649212-1649212|G/-|frameshift_variant	REV__PXDN|p.C857Afs*5|2|0.33|ENSG00000130508|chr2:1649212-1649212|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	456.77239990234375	2	456.770406	911.526258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.449	1	47.078	46.578	47.578	-0.37038								0	0	0	0.8837	1	17550	17550		9.3474	0	1		+		32426	11925	20441	20553	31216	31216					0.06695623267671635
SVLYHVSIP	9	Unmodified	_SVLYHVSIP_					0	0	0		ENST00000557925.1_1_19:8315741-8320784:+|nuORF	ENST00000557925.1_1_19:8315741-8320784:+|nuORF	ENST00000557925.1_1_19:8315741-8320784:+|nuORF	MSMS	HCT116MG_D190212_S2	2	507.7848205566406	2	507.784567	1013.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.02	1	54.833	54.333	55.333	-0.18797								0	0	0	0.76603	1	21198	21198		14.838	0.93222	1				32427	8798	20442	20554	31217	31217					0.04834644448601466
SVMDWKDGV	9	Unmodified	_SVMDWKDGV_					0	0	0		ENSG00000198945|ENST00000361794|L3MBTL3;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;L3MBTL3|p.M479*|1|0.26|ENSG00000198945|chr6:130086161-130086161|A/-|frameshift_variant	ENSG00000198945|ENST00000361794|L3MBTL3	ENSG00000198945|ENST00000361794|L3MBTL3	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.031005859375	2	518.742042	1035.46953	0.36249	0.00018804	-0.76089	-0.00039471	-0.3984	-0.00020667	518.7416830198714	43.917	0.35987	43.839	43.556	43.916	-0.078373					8	6	2	0	0	0	0.18678	1	16664	16664		40.239	7.9337	1	13411000			32428	6305	20443	20555	31218	31218					-0.04678469079499337
SVNAPEFYPSG	11	Unmodified	_SVNAPEFYPSG_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MSMS	HCT116MG_D190212_S4	4	584.267822265625	2	584.269478	1166.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.958	1	20.748	20.248	21.248	-0.20959								0	0	0	0.93295	1	7206	7206		15.248	1.3424	1				32429	5242	20444	20556	31219	31219					-0.05219759007263747
SVNGKLRASL	10	Unmodified	_SVNGKLRASL_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	HCT116MG_D190212_S1	1	522.8117065429688	2	522.811648	1043.60874	0.24714	0.00012921	0.050037	2.616E-05	0.29717	0.00015537	522.8115913603856	51.272	1.3442	51.272	50.936	52.28	0					52	25	5	0	0	0	0.72406	1	19674	19674		18.373	8.99	1	1993399999.9999998			32430	4465	20445	20557	31220	31220					0.08868236600187629
SVNIVKATEWY	11	Unmodified	_SVNIVKATEWY_					0	0	0		L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|19|2|sense	L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|19|2|sense	L1MB8_dup3477|chr3:193839654-193840532:-|1.6485885596924217|0.3003449133866926|2.46|479.0|19|2|sense	MSMS	HCT116MG_D190212_S4	4	655.341064453125	2	655.342978	1308.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.231	1	26.92	26.42	27.42	-0.3114								0	0	0	0.94012	1	9739	9739		11.495	2.7493	1				32431	9278	20446	20558	31221	31221					0.029413378777235266
SVNYELGP	8	Unmodified	_SVNYELGP_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	HCT116MG_D190212_S2	2	878.4268798828125	1	878.425424	877.418148	1.0691	0.00093911	1.6252	0.0014276	2.6943	0.0023667	878.4251155673072	33.628	0.36405	33.435	33.327	33.691	-0.19296					11	6	3	0	0	0	0.30543	1	12512	12512		58.679	1.2075	1	14060000	+		32432	11542	20447	20559	31222	31222					-0.0254646978190749
SVNYLYLH	8	Unmodified	_SVNYLYLH_					0	0	0			REV__ENSG00000185800|ENST00000270223|DMWD	REV__ENSG00000185800|ENST00000270223|DMWD	MSMS	HCT116MG_D190212_S2	2	504.292236328125	2	504.761092	1007.50763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.428	1	50.256	49.756	50.756	-0.1719								0	0	0	0.79325	1	19326	19326		23.148	0	1		+		32433	13858	20448	20560	31223	31223					0.004177848974677545
SVPFPVTHTA	10	Unmodified	_SVPFPVTHTA_					0	0	0		ENST00000358227.4_1_9:7798435-7799537:-|nuORF	ENST00000358227.4_1_9:7798435-7799537:-|nuORF	ENST00000358227.4_1_9:7798435-7799537:-|nuORF	MSMS	HCT116MG_D190212_S4	4	528.2772827148438	2	528.279649	1054.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.847	1	21.629	21.129	22.129	-0.21832								0	0	0	0.5764	1	7566	7566		43.858	5.8843	1				32434	7320	20449	20561	31224	31224					0.0196545644323578
SVPGPDSP	8	Unmodified	_SVPGPDSP_					0	0	0		KMT2D|p.P2716Lfs*17|1|0.24|ENSG00000167548|chr12:49039519-49039519|C/-|frameshift_variant;KMT2D|p.Y2907Tfs*3|1|0.26|ENSG00000167548|chr12:49038637-49038637|A/-|frameshift_variant;KMT2D|p.V3089Wfs*30|1|0.12|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;KMT2D|p.P3102Lfs*17|1|0.26|ENSG00000167548|chr12:49038051-49038051|G/-|frameshift_variant;KMT2D|p.A3552Sfs*4|1|0.51|ENSG00000167548|chr12:49034153-49034154|-/T|frameshift_variant;KMT2D|p.Q4156Nfs*5|1|0.15|ENSG00000167548|chr12:49032239-49032239|G/-|frameshift_variant;KMT2D|p.S4327Afs*57|1|0.44|ENSG00000167548|chr12:49031727-49031727|G/-|frameshift_variant;KMT2D|p.T4629Pfs*11|1|0.27|ENSG00000167548|chr12:49030395-49030395|G/-|frameshift_variant;KMT2D|p.T4629Hfs*18|1|0.31|ENSG00000167548|chr12:49030394-49030395|-/G|frameshift_variant;KMT2D|p.A5076Hfs*2|1|0.12|ENSG00000167548|chr12:49026740-49026740|C/-|frameshift_variant;KMT2D|p.G5182Afs*61|1|0.57|ENSG00000167548|chr12:49026421-49026421|C/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.G2279Wfs*20|1|0.45|ENSG00000167548|chr12:49040935-49040936|-/A|frameshift_variant;KMT2D|p.P2354Lfs*30|7|0.16|ENSG00000167548|chr12:49040709-49040709|G/-|frameshift_variant;KMT2D|p.S2532Lfs*11|1|0.24|ENSG00000167548|chr12:49040177-49040177|G/-|frameshift_variant	KMT2D|p.P2716Lfs*17|1|0.24|ENSG00000167548|chr12:49039519-49039519|C/-|frameshift_variant	KMT2D|p.P2716Lfs*17|1|0.24|ENSG00000167548|chr12:49039519-49039519|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	755.3565673828125	1	755.35701	754.349734	1.0639	0.00080362	-0.58567	-0.00044239	0.47822	0.00036123	755.3564224099862	24.765	1.5605	24.386	23.408	24.968	-0.37862					36	29	2	0	0	0	0.36164	1	8961	8961		53.576	2.7205	1	9233000			32435	4931	20450	20562	31225	31225					-0.03726714361755512
SVPLDHVPQ	9	Unmodified	_SVPLDHVPQ_					0	0	0			REV__nc|ENSG00000172534|P51610-2|HCFC1	REV__nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	HCT116MG_D190212_S4	4	496.2640380859375	2	496.263999	990.513445	0.3613	0.0001793	-0.13286	-6.5932E-05	0.22844	0.00011337	496.2639365584104	30.292	0.40618	29.935	29.597	30.003	-0.3571					10	7	2	0	0	0	0.30874	1	10974	10974		29.841	0.759	1	3576300	+		32436	13392	20451	20563	31226	31226					0.017808834091511017
SVPQDLNHELQ	11	Unmodified	_SVPQDLNHELQ_					0	0	0		CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.M1226Wfs*13|1|0.22|ENSG00000164309|chr5:79732436-79732436|A/-|frameshift_variant;CMYA5|p.K1823Rfs*17|2|0.34|ENSG00000164309|chr5:79734227-79734227|A/-|frameshift_variant;CMYA5|p.N2399Ifs*16|1|0.46|ENSG00000164309|chr5:79735957-79735957|A/-|frameshift_variant	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	640.31787109375	2	640.317491	1278.62043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.445	1	22.445	21.945	22.945	0								0	0	0	0.94851	1	7947	7947		7.1017	2.2047	1				32437	488	20452	20564	31227	31227					-0.007736111671420076
SVPTRKATA	9	Unmodified	_SVPTRKATA_					0	0	0		ENST00000359995.9_1_17:74733321-74733423:-|nuORF	ENST00000359995.9_1_17:74733321-74733423:-|nuORF	ENST00000359995.9_1_17:74733321-74733423:-|nuORF	MSMS	HCT116MG_D190212_S3	3	465.7715148925781	2	465.771991	929.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.382	1	18.459	17.959	18.959	0.076334								0	0	0	0.76739	1	6239	6239		10.074	0	1				32438	7344	20453	20565	31228	31228					0.061845896460340555
SVQAWTLWCCL	11	Unmodified	_SVQAWTLWCCL_					0	0	0			REV__PANK1|p.K400Sfs*23|1|0.36|ENSG00000152782|chr10:89599363-89599363|T/-|frameshift_variant	REV__PANK1|p.K400Sfs*23|1|0.36|ENSG00000152782|chr10:89599363-89599363|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	655.3050537109375	2	655.307026	1308.5995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.872	1	25.582	25.082	26.082	-0.29022								0	0	0	0.9387	1	9190	9190		12.241	1.4411	1		+		32439	17382	20454	20566	31229	31229					-0.04245616071989389
SVQEELAVP	9	Unmodified	_SVQEELAVP_					0	0	0		ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	MSMS	HCT116MG_D190212_S4	4	485.7698974609375	2	486.25584	970.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.994	1	27.672	27.172	28.172	-0.32157								0	0	0	0.61599	1	10047	10047		23.148	1.4018	1				32440	6351	20455	20567	31230	31230					0.01069757452387421
SVQPGRYNESP	11	Unmodified	_SVQPGRYNESP_					0	0	0			REV__ENSG00000153498|ENST00000283550|SPACA7	REV__ENSG00000153498|ENST00000283550|SPACA7	MULTI-MSMS	HCT116MG_D190212_S3	3	617.2972412109375	2	617.296559	1232.57856	0.42137	0.00026011	0.54034	0.00033355	0.96171	0.00059366	617.2968833211726	24.691	0.67691	24.608	24.341	25.018	-0.083694					16	12	2	0	0	0	0.69168	1	8790	8790		24.882	3.2914	1	7896200	+		32441	12655	20456	20568	31231	31231					-0.028421668556802615
SVQPGRYNESP	11	Unmodified	_SVQPGRYNESP_					0	0	0			REV__ENSG00000153498|ENST00000283550|SPACA7	REV__ENSG00000153498|ENST00000283550|SPACA7	MULTI-MSMS	HCT116MG_D190212_S4	4	617.297119140625	2	617.296559	1232.57856	0.73264	0.00045225	-0.24258	-0.00014974	0.49006	0.00030251	617.296531306053	24.784	0.77872	24.515	24.082	24.861	-0.26881					22	14	3	0	0	0	0.70332	1	8734	8734		20.581	0.1664	1	5288900	+		32442	12655	20456	20568	31232	31232					-0.028421668556802615
SVQPGRYNESP	11	Unmodified	_SVQPGRYNESP_					0	0	0			REV__ENSG00000153498|ENST00000283550|SPACA7	REV__ENSG00000153498|ENST00000283550|SPACA7	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	617.296559	1232.57856	0.42137	0.00026011	0.54034	0.00033355	0.96171	0.00059366	617.2968833211726	24.691	0.67691	24.608	24.341	25.018	-0.083694	0.046297	0.00027098	NaN	24.882	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7896200	+		32443	12655	20456	20568							-0.028421668556802615
SVQPLGLHEAI	11	Unmodified	_SVQPLGLHEAI_					0	0	0			REV__tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	REV__tr|U7SST0|U7SST0_FUSNUElectrontransferflavoproteinbetasubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01366PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	582.32470703125	2	582.324588	1162.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.643	1	18.462	17.962	18.962	-0.18052								0	0	0	0.93607	1	6271	6271		13.615	0.5724	1		+		32444	17778	20457	20569	31233	31233					0.059810860518155096
SVQPPLLTHK	10	Unmodified	_SVQPPLLTHK_					0	0	0			REV__ENST00000339381.5_1_1:1268919-1269807:+|nuORF	REV__ENST00000339381.5_1_1:1268919-1269807:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	373.8890075683594	3	373.888874	1118.64479	-0.1238	-4.6288E-05	0.29895	0.00011177	0.17515	6.5487E-05	373.88892387456406	15.918	0.26013	16.003	15.821	16.081	0.085423					6	4	2	0	0	0	0.68623	1	5256	5256		14.218	5.7739	1	1453300	+		32445	14962	20458	20570	31234	31234					0.09021693777026485
SVQPTLLDMDM	11	Unmodified	_SVQPTLLDMDM_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	HCT116MG_D190212_S1	1	625.2944946289062	2	625.293782	1248.57301	0.67575	0.00042254	0.41457	0.00025923	1.0903	0.00068177	625.2938681826065	22.483	0.36523	22.483	22.22	22.585	0					10	6	2	0	0	0	0.72004	1	7969	7969		14.405	0	1	3000100			32446	3101	20459	20571	31235	31235					-0.04133349753988114
SVQRLTKS	8	Unmodified	_SVQRLTKS_					0	0	0		ENST00000475640.1_1_3:122437249-122439770:+|nuORF;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14	ENST00000475640.1_1_3:122437249-122439770:+|nuORF	ENST00000475640.1_1_3:122437249-122439770:+|nuORF	MSMS	HCT116MG_D190212_S1	1	459.7704772949219	2	459.771991	917.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.068	1	30.068	29.568	30.568	0								0	0	0	0.8837	1	11014	11014		8.5933	0	1				32447	5277	20460	20572	31236	31236					0.06736589646038738
SVQRSFTQV	9	Unmodified	_SVQRSFTQV_					0	0	0		SREBF2|p.Q108Tfs*70|1|0.25|ENSG00000198911|chr22:41867058-41867059|-/C|frameshift_variant;nc|ENSG00000198911|Q12772-2|SREBF2;ENSG00000198911|ENST00000361204|SREBF2	SREBF2|p.Q108Tfs*70|1|0.25|ENSG00000198911|chr22:41867058-41867059|-/C|frameshift_variant	SREBF2|p.Q108Tfs*70|1|0.25|ENSG00000198911|chr22:41867058-41867059|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	351.18890380859375	3	351.189212	1050.54581	-0.16959	-5.9557E-05	-0.075913	-2.666E-05	-0.2455	-8.6217E-05	351.18917933511256	17.928	0.20905	17.571	17.441	17.65	-0.35647					5	3	2	0	0	0	0.53593	1	6150	6150		10.151	1.7063	1	6612600			32448	6297	20461	20573	31237	31237					0.022556708121328484
SVQVSDSAV	9	Unmodified	_SVQVSDSAV_					0	0	0		nc|ENSG00000211819|A0A0B4J280|TRAV40;nc|ENSG00000211793|A0A087WT02|TRAV9-2	nc|ENSG00000211819|A0A0B4J280|TRAV40	nc|ENSG00000211819|A0A0B4J280|TRAV40	MULTI-MSMS	HCT116MG_D190212_S2	2	893.422119140625	1	891.441802	890.434526	1.2155	0.0010835	0.021485	1.9153E-05	1.237	0.0011027	891.4415418381693	26.101	0.31218	25.74	25.557	25.87	-0.36164					12	5	3	0	0	0	0.29516	1	9426	9426		31.268	0.6318	1	32988000			32449	9628	20462	20574	31238	31238					-0.015073886158120331
SVRVAISLQP	10	Unmodified	_SVRVAISLQP_					0	0	0			REV__ENST00000478626.1_1_2:85838448-85838818:-|nuORF	REV__ENST00000478626.1_1_2:85838448-85838818:-|nuORF	MSMS	HCT116MG_D190212_S4	4	357.2174072265625	3	357.216991	1068.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.267	1	40.89	40.39	41.39	-0.37732								0	0	0	0.95631	1	15170	15170		3.3196	0	1		+		32450	15936	20463	20575	31239	31239					0.09757407259985484
SVRWVVDNF	9	Unmodified	_SVRWVVDNF_					0	0	0			REV__SEC13|p.H267R|1|0.38|ENSG00000157020|chr3:10304081-10304081|T/C|missense_variant	REV__SEC13|p.H267R|1|0.38|ENSG00000157020|chr3:10304081-10304081|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	560.8159790039062	2	561.290548	1120.56654	0.29346	0.00016472	-1.3961	-0.00078361	-1.1026	-0.0006189	561.290351511771	38.264	0.25865	38.171	38.011	38.27	-0.093006					5	4	2	0	0	0	0.25347	1	14343	14343		14.838	5.4551	1	7508800	+		32451	17500	20464	20576	31240	31240					0.011082611918027396
SVSFYLKKK	9	Unmodified	_SVSFYLKKK_					0	0	0		ENST00000554649.1_1_15:95578663-95578804:-|nuORF	ENST00000554649.1_1_15:95578663-95578804:-|nuORF	ENST00000554649.1_1_15:95578663-95578804:-|nuORF	MSMS	HCT116MG_D190212_S4	4	367.22216796875	3	367.221853	1098.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.119	1	9.9194	9.4194	10.419	-0.1993								0	0	0	0.76973	1	3099	3099		0.96228	0	1				32452	8780	20465	20577	31241	31241					0.09835479408116043
SVSHTSAPQHV	11	Unmodified	_SVSHTSAPQHV_					0	0	0		ENST00000533683.6_2_19:14198965-14199232:-|nuORF	ENST00000533683.6_2_19:14198965-14199232:-|nuORF	ENST00000533683.6_2_19:14198965-14199232:-|nuORF	MSMS	HCT116MG_D190212_S3	3	383.85968017578125	3	383.859755	1148.55744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.308	1	16.393	15.893	16.893	0.085424								0	0	0	0.94538	1	5402	5402		7.0371	2.6309	1				32453	8649	20466	20578	31242	31242					-0.010901321645405915
SVSLEGLNL	9	Unmodified	_SVSLEGLNL_					0	0	0		nc|ENSG00000139220|O75334-7|PPFIA2;PPFIA2|p.H786Lfs*48|1|0.16|ENSG00000139220|chr12:81341113-81341116|GTGA/-|frameshift_variant;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2	nc|ENSG00000139220|O75334-7|PPFIA2	nc|ENSG00000139220|O75334-7|PPFIA2	MULTI-MSMS	HCT116MG_D190212_S1	1	931.509033203125	1	931.509488	930.502212	0.74254	0.00069168	-0.040651	-3.7867E-05	0.70189	0.00065381	931.5093566980795	50.24	0.25831	50.24	50.059	50.317	0					8	4	3	0	0	0	0.035349	1	19165	19165		81.89	0.27713	1	28469000			32454	3614	20467	20579	31243	31243					0.034180613149942474
SVTDSKAM	8	Unmodified	_SVTDSKAM_					0	0	0		ENST00000567990.5_1_16:69680959-69687204:+|nuORF;nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	ENST00000567990.5_1_16:69680959-69687204:+|nuORF	ENST00000567990.5_1_16:69680959-69687204:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	419.19146728515625	2	419.702386	837.390218	0.091799	3.8528E-05	0.97154	0.00040776	1.0633	0.00044629	419.7026861061603	34.734	0.35526	34.348	34.187	34.542	-0.3859					13	6	3	0	0	0	0.33364	1	12733	12733		0	0	1	6796700			32455	1858	20468	20580	31244	31244					-0.03498116033642873
SVTQPQKQP	9	Unmodified	_SVTQPQKQP_					0	0	0		nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF;ENSG00000053770|ENST00000261558|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	MSMS	HCT116MG_D190212_S4	4	506.7746887207031	2	506.774731	1011.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.435	1	21.216	20.716	21.716	-0.21832								0	0	0	0.7663	1	7399	7399		13.906	0	1				32456	1064	20469	20581	31245	31245					0.02960268437857394
SVTSEGIKAV	10	Unmodified	_SVTSEGIKAV_					0	0	0		nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1	nc|ENSG00000151743|Q8IY45-2|AMN1	nc|ENSG00000151743|Q8IY45-2|AMN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	496.24053955078125	2	495.776939	989.539325	0.32443	0.00016085	-0.065546	-3.2496E-05	0.25889	0.00012835	495.7768177119166	31.009	0.20767	30.742	30.612	30.819	-0.26704					5	3	2	0	0	0	0.26991	1	11430	11430		22.658	0	1	7542900			32457	4125	20470	20582	31246	31246					0.0441373286076896
SVTSHIYQV	9	Unmodified	_SVTSHIYQV_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	HCT116MG_D190212_S2	2	517.2696533203125	2	517.269281	1032.52401	0.28926	0.00014963	-0.1413	-7.3089E-05	0.14796	7.6537E-05	517.2691381494694	35.109	0.20738	34.951	34.813	35.02	-0.15834					8	3	3	0	0	0	0.28073	1	13108	13108		32.786	2.9451	1	14059000			32458	2975	20471	20583	31247	31247					0.00904866063569898
SVVIKKILQS	10	Unmodified	_SVVIKKILQS_					0	0	0		ENSG00000205209|ENST00000601241|SCGB2B2	ENSG00000205209|ENST00000601241|SCGB2B2	ENSG00000205209|ENST00000601241|SCGB2B2	MSMS	HCT116MG_D190212_S3	3	557.8612060546875	2	557.863349	1113.71214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.595	1	50.282	49.782	50.782	-0.31381								0	0	0	0.95648	1	19083	19083		3.2813	0.28607	1				32459	6370	20472	20584	31248	31248					0.15983723988006204
SVVKFISKTL	10	Unmodified	_SVVKFISKTL_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14	REV__nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	HCT116MG_D190212_S2	2	561.3485107421875	2	561.350074	1120.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.506	1	45.413	44.913	45.913	-0.092472								0	0	0	0.90291	1	17307	17307		15.248	5.8654	1		+		32460	17248	20473	20585	31249	31249					0.13008035096663662
SVVMGINN	8	Unmodified	_SVVMGINN_					0	0	0			REV__ENST00000480370.1_1_2:70515139-70520750:-|nuORF	REV__ENST00000480370.1_1_2:70515139-70520750:-|nuORF	MSMS	HCT116MG_D190212_S1	1	417.21148681640625	2	417.212921	832.411288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.316	1	43.316	42.816	43.816	0								0	0	0	0.8837	1	16361	16361		8.5933	3.3626	1		+		32461	15945	20474	20586	31250	31250					-0.011621059341337059
SVVRIFYQP	9	Unmodified	_SVVRIFYQP_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MSMS	HCT116MG_D190212_S2	2	554.8088989257812	2	554.811116	1107.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.169	1	27.839	27.339	28.339	-0.32987								0	0	0	0.76603	1	10264	10264		14.838	0.93222	1		+		32462	12411	20475	20587	31251	31251					0.05818022231255782
SVWFGPKEV	9	Unmodified	_SVWFGPKEV_					0	0	0		FLVCR1|p.V242Afs*26|1|0.06|ENSG00000162769|chr1:212859176-212859177|-/CACT|frameshift_variant;FLVCR1|p.N331Tfs*8|1|0.34|ENSG00000162769|chr1:212872782-212872782|A/-|frameshift_variant;ENSG00000162769|ENST00000366971|FLVCR1	FLVCR1|p.V242Afs*26|1|0.06|ENSG00000162769|chr1:212859176-212859177|-/CACT|frameshift_variant	FLVCR1|p.V242Afs*26|1|0.06|ENSG00000162769|chr1:212859176-212859177|-/CACT|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	524.7767944335938	2	524.776742	1047.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.827	1	47.694	47.194	48.194	-0.13281								0	0	0	0.016501	1	18254	18254		96.936	44.667	1				32463	4554	20476	20588	31252	31252					0.01706357931561797
SVWNEQPPP	9	Unmodified	_SVWNEQPPP_					0	0	0			REV__REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant	REV__REPS1|p.F519Yfs*3|1|0.21|ENSG00000135597|chr6:138917599-138917600|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	527.3165893554688	2	527.253631	1052.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.398	1	20.398	19.898	20.898	0								0	0	0	0.76641	1	7127	7127		13.508	0	1		+		32464	12101	20477	20589	31253	31253					-0.031437069705361864
SWCSMWCLR	9	Unmodified	_SWCSMWCLR_					0	0	0		ENST00000574992.5_1_17:79872535-79873329:-|nuORF	ENST00000574992.5_1_17:79872535-79873329:-|nuORF	ENST00000574992.5_1_17:79872535-79873329:-|nuORF	MSMS	HCT116MG_D190212_S3	3	391.16680908203125	3	391.166368	1170.47728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.659	1	58.39	57.89	58.89	-0.26853								0	0	0	0.76995	1	22319	22319		1.0715	0	1				32465	8914	20478	20590	31254	31254					-0.10114356355234122
SWCSMWCLR	9	Unmodified	_SWCSMWCLR_					0	0	0		ENST00000574992.5_1_17:79872535-79873329:-|nuORF	ENST00000574992.5_1_17:79872535-79873329:-|nuORF	ENST00000574992.5_1_17:79872535-79873329:-|nuORF	MSMS	HCT116MG_D190212_S4	4	391.16680908203125	3	391.166368	1170.47728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.664	1	58.381	57.881	58.881	-0.28305								0	0	0	0.76995	1	22055	22055		1.0715	0	1				32466	8914	20478	20590	31255	31255					-0.10114356355234122
SWDEMTVLL	9	Unmodified	_SWDEMTVLL_					0	0	0			REV__nc|ENSG00000136859|Q9UKU9-2|ANGPTL2	REV__nc|ENSG00000136859|Q9UKU9-2|ANGPTL2	MULTI-MSMS	HCT116MG_D190212_S3	3	547.2662963867188	2	547.26535	1092.51615	0.5763	0.00031539	0.029015	1.5879E-05	0.60531	0.00033127	547.2654164210963	45.258	1.2408	44.949	44.325	45.566	-0.30927					43	26	2	0	0	0	0.70529	1	16730	16730		1.8442	1.8442	1	6517100	+		32467	12145	20479	20591	31256	31256					-0.026410292482069053
SWDSEQGLHE	10	Unmodified	_SWDSEQGLHE_					0	0	0		ENST00000549775.5_1_17:6920662-6920761:+|nuORF	ENST00000549775.5_1_17:6920662-6920761:+|nuORF	ENST00000549775.5_1_17:6920662-6920761:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	594.2514038085938	2	594.251817	1186.48908	0.59479	0.00035346	-0.57217	-0.00034001	0.022622	1.3443E-05	594.2513427689756	23.67	0.2605	23.63	23.5	23.76	-0.03968					7	4	2	0	0	0	0.40349	1	8372	8372		41.956	7.5538	1	8814600			32468	8747	20480	20592	31257	31257					-0.09670421535042806
SWGGGGRHRKL	11	Unmodified	_SWGGGGRHRKL_					0	0	0		LDLRAP1|p.S202Pfs*2|4|0.27|ENSG00000157978|chr1:25563141-25563141|T/-|frameshift_variant;LDLRAP1|p.T225Rfs*18|1|0.23|ENSG00000157978|chr1:25563718-25563718|C/-|frameshift_variant;ENSG00000157978|ENST00000374338|LDLRAP1	LDLRAP1|p.S202Pfs*2|4|0.27|ENSG00000157978|chr1:25563141-25563141|T/-|frameshift_variant	LDLRAP1|p.S202Pfs*2|4|0.27|ENSG00000157978|chr1:25563141-25563141|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	605.8314819335938	2	605.831237	1209.64792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.72	1	12.72	12.22	13.22	0								0	0	0	0.96149	1	4098	4098		0.30703	0	1				32469	4351	20481	20593	31258	31258					0.05148381674416669
SWLFDFFKYYY	11	Unmodified	_SWLFDFFKYYY_					0	0	0		ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENST00000524082.5_1_5:167913503-167919924:+|nuORF	MSMS	HCT116MG_D190212_S3	3	789.86962890625	2	789.868828	1577.7231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.752	1	52.445	51.945	52.945	-0.30639								0	0	0	0.95954	1	19949	19949		1.3295	0	1				32470	8575	20482	20594	31259	31259					-0.042649184283618524
SWRLGALG	8	Unmodified	_SWRLGALG_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-2|GAREM2	REV__nc|ENSG00000157833|Q75VX8-2|GAREM2	MSMS	HCT116MG_D190212_S2	2	430.2434997558594	2	430.24287	858.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.245	1	58.075	57.575	58.575	-0.1703								0	0	0	0.8837	1	22505	22505		0.79363	0	1		+		32471	12766	20483	20595	31260	31260					0.03628952791439133
SWRRRRLRSSR	11	Unmodified	_SWRRRRLRSSR_					0	0	0			REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	758.4463500976562	2	758.445623	1514.87669	0.9208	0.00069838	-0.096571	-7.3244E-05	0.82423	0.00062514	758.4452978783223	53.764	1.7929	53.764	52.794	54.587	0					58	34	3	0	0	0	0.74191	1	20658	20658		1.0715	0.80244	1	48777000	+		32472	9912	20484	20596	31261	31261					0.13984973971150794
SWRRRRLRSSR	11	Unmodified	_SWRRRRLRSSR_					0	0	0			REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	758.445623	1514.87669	0.9208	0.00069838	-0.096571	-7.3244E-05	0.82423	0.00062514	758.4452978783223	53.764	1.7929	53.764	52.794	54.587	0	0	0	NaN	1.0715	58	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48777000	+		32473	9912	20484	20596							0.13984973971150794
SWSAGENDSYS	11	Unmodified	_SWSAGENDSYS_					0	0	0		CON__Q86YZ3;ENSG00000197915|ENST00000368801|HRNR;HRNR|p.P307Lfs*278|1|0.44|ENSG00000197915|chr1:152220711-152220711|A/-|frameshift_variant	CON__Q86YZ3	CON__Q86YZ3	MULTI-MSMS	HCT116MG_D190212_S3	3	601.2928466796875	2	601.733457	1201.45236	0.56736	0.0003414	-0.10806	-6.5022E-05	0.45931	0.00027638	601.7332662351138	18.519	0.62491	18.596	18.413	19.038	0.076334					29	11	4	0	0	0	0.72792	1	6431	6431		11.495	0.6952	1	40522000		+	32474	584	20485	20597	31262	31262					-0.14030718151616384
SWWPAMVVSWK	11	Unmodified	_SWWPAMVVSWK_					0	0	0		DNMT3B|p.L454Sfs*136|2|0.27|ENSG00000088305|chr20:32796845-32796845|G/-|frameshift_variant;nc|ENSG00000088305|Q9UBC3-7|DNMT3B;nc|ENSG00000088305|Q9UBC3-4|DNMT3B;nc|ENSG00000088305|Q9UBC3-8|DNMT3B;nc|ENSG00000088305|Q9UBC3-3|DNMT3B;nc|ENSG00000088305|Q9UBC3-5|DNMT3B;nc|ENSG00000088305|Q9UBC3-2|DNMT3B;nc|ENSG00000088305|Q9UBC3-6|DNMT3B;ENSG00000088305|ENST00000328111|DNMT3B	DNMT3B|p.L454Sfs*136|2|0.27|ENSG00000088305|chr20:32796845-32796845|G/-|frameshift_variant	DNMT3B|p.L454Sfs*136|2|0.27|ENSG00000088305|chr20:32796845-32796845|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	459.2676086425781	3	459.565514	1375.67471	-0.035436	-1.6285E-05	1.7923	0.00082368	1.7569	0.00080739	459.9004699453594	44.201	0.21516	44.201	44.088	44.304	0					5	3	2	0	0	0	0.36511	1	16692	16692		6.6235	4.5374	1	8583300			32475	719	20486	20598	31263	31263					0.0019030945070426242
SWWPAMVVSWK	11	Unmodified	_SWWPAMVVSWK_					0	0	0		DNMT3B|p.L454Sfs*136|2|0.27|ENSG00000088305|chr20:32796845-32796845|G/-|frameshift_variant;nc|ENSG00000088305|Q9UBC3-7|DNMT3B;nc|ENSG00000088305|Q9UBC3-4|DNMT3B;nc|ENSG00000088305|Q9UBC3-8|DNMT3B;nc|ENSG00000088305|Q9UBC3-3|DNMT3B;nc|ENSG00000088305|Q9UBC3-5|DNMT3B;nc|ENSG00000088305|Q9UBC3-2|DNMT3B;nc|ENSG00000088305|Q9UBC3-6|DNMT3B;ENSG00000088305|ENST00000328111|DNMT3B	DNMT3B|p.L454Sfs*136|2|0.27|ENSG00000088305|chr20:32796845-32796845|G/-|frameshift_variant	DNMT3B|p.L454Sfs*136|2|0.27|ENSG00000088305|chr20:32796845-32796845|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		3	459.565514	1375.67471	-0.098863	-4.5434E-05	2.1474	0.00098687	2.0485	0.00094144	459.56650657713993	44.15	0.2565	44.071	43.916	44.173	-0.078373	-0.064735	0.00018415	NaN	6.6235	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18224000			32476	719	20486	20598							0.0019030945070426242
SWWRFWIWERR	11	Unmodified	_SWWRFWIWERR_					0	0	0			REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	854.4358520507812	2	854.436401	1706.85825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.652	1	46.652	46.152	47.152	0								0	0	0	0.96208	1	17706	17706		0	0	1		+		32477	16937	20487	20599	31264	31264					0.03309419276547487
SWWRFWIWERR	11	Unmodified	_SWWRFWIWERR_					0	0	0			REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	854.4334716796875	2	854.436401	1706.85825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.511	1	56.329	55.829	56.829	-0.18261								0	0	0	0.96208	1	21807	21807		0	0	1		+		32478	16937	20487	20599	31265	31265					0.03309419276547487
SYARYCNPCK	10	Unmodified	_SYARYCNPCK_					0	0	0			REV__ENSG00000160094|ENST00000539719|ZNF362	REV__ENSG00000160094|ENST00000539719|ZNF362	MSMS	HCT116MG_D190212_S2	2	402.179931640625	3	402.179443	1203.5165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0398	1	8.7957	8.2957	9.2957	-0.24401								0	0	0	0.96804	1	2828	2828		0.69767	0.07084	1		+		32479	12817	20488	20600	31266	31266					-0.07711932800043542
SYCCCCCD	8	Unmodified	_SYCCCCCD_					0	0	0			REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF	REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF	MSMS	HCT116MG_D190212_S2	2	450.1128234863281	2	450.09667	898.178787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.47821	1	0.47427	-0.025729	0.97427	-0.0039395								0	0	0	0.8837	1	155	155		0	0	1		+		32480	15185	20489	20601	31267	31267					-0.2743751865457398
SYCEGGGG	8	Unmodified	_SYCEGGGG_					0	0	0		sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1;sp|F5H9I4|US13_HCMVMMembraneproteinUS13OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US13PE=3SV=1	sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	365.130126953125	2	365.129054	728.243554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.79	1	59.63	59.13	60.13	-0.16012								0	0	0	0.8837	1	23126	23126		0.79363	0.10326	1				32481	18189	20490	20602	31268	31268					-0.13143793198719322
SYDCDDPL	8	Unmodified	_SYDCDDPL_					0	0	0		CNTNAP4|p.Q397Nfs*18|1|0.17|ENSG00000152910|chr16:76452621-76452621|T/-|frameshift_variant;CNTNAP4|p.F657Sfs*42|1|0.3|ENSG00000152910|chr16:76489769-76489769|T/-|frameshift_variant;CNTNAP4|p.N1023Tfs*13|1|0.46|ENSG00000152910|chr16:76538184-76538184|A/-|frameshift_variant;ENSG00000152910|ENST00000611870|CNTNAP4	CNTNAP4|p.Q397Nfs*18|1|0.17|ENSG00000152910|chr16:76452621-76452621|T/-|frameshift_variant	CNTNAP4|p.Q397Nfs*18|1|0.17|ENSG00000152910|chr16:76452621-76452621|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	464.1750793457031	2	464.173658	926.332763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.258	1	36.258	35.758	36.758	0								0	0	0	0.8837	1	13511	13511		2.8892	0.31174	1				32482	505	20491	20603	31269	31269					-0.13335003029897052
SYDPDYIQC	9	Unmodified	_SYDPDYIQC_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	HCT116MG_D190212_S2	2	552.22119140625	2	552.221139	1102.42773	0.51418	0.00028394	0.23913	0.00013205	0.7533	0.00041599	552.2211442371167	36.39	0.25962	36.262	36.174	36.434	-0.12799					8	4	3	0	0	0	0.2853	1	13635	13635		32.305	9.1571	1	14343000			32483	1934	20492	20604	31270	31270					-0.11939069558684423
SYDPDYIQC	9	Unmodified	_SYDPDYIQC_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MATCH	HCT116MG_D190212_S1	1		2	552.221139	1102.42773	0.42545	0.00023494	1.2752	0.00070418	1.7006	0.00093913	552.2217884896701	36.391	0.21004	36.391	36.312	36.522	0	0.064058	0.00070524	NaN	32.305	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4974400			32484	1934	20492	20604							-0.11939069558684423
SYDPDYIQC	9	Unmodified	_SYDPDYIQC_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	552.221139	1102.42773	0.51418	0.00028394	0.23913	0.00013205	0.7533	0.00041599	552.2211442371167	36.39	0.25962	36.262	36.174	36.434	-0.12799	-0.064058	-0.00043903	NaN	32.305	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14343000			32485	1934	20492	20604							-0.11939069558684423
SYFFRQPTV	9	Unmodified	_SYFFRQPTV_					0	0	0		ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	MSMS	HCT116MG_D190212_S2	2	382.1969909667969	3	382.197708	1143.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.518	1	34.343	33.843	34.843	-0.17512								0	0	0	0.71969	1	12845	12845		12.241	2.6967	1				32486	6669	20493	20605	31271	31271					0.005251453345636037
SYFNLKWIS	9	Unmodified	_SYFNLKWIS_					0	0	0			REV__ENST00000417201.3_1_9:125003423-125003585:-|nuORF	REV__ENST00000417201.3_1_9:125003423-125003585:-|nuORF	MSMS	HCT116MG_D190212_S1	1	579.3037719726562	2	579.303124	1156.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.57	1	43.57	43.07	44.07	0								0	0	0	0.768	1	16464	16464		7.9102	0	1		+		32487	15486	20494	20606	31272	31272					0.0196631599437751
SYGGGEEA	8	Unmodified	_SYGGGEEA_					0	0	0		CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P35527	CON__P35527	MSMS	HCT116MG_D190212_S2	2	385.15325927734375	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7747	1	8.5306	8.0306	9.0306	-0.24401								0	0	0	0.8837	1	2740	2740		0	0	1			+	32488	564	20495	20607	31273	31273					-0.10080181638147678
SYGGGEEA	8	Unmodified	_SYGGGEEA_					0	0	0		CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P35527	CON__P35527	MSMS	HCT116MG_D190212_S3	3	385.15289306640625	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.934	1	2.9792	2.4792	3.4792	0.045237								0	0	0	0.8837	1	891	891		0.69038	0	1			+	32489	564	20495	20607	31274	31274					-0.10080181638147678
SYGGGEEA	8	Unmodified	_SYGGGEEA_					0	0	0		CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P35527	CON__P35527	MSMS	HCT116MG_D190212_S4	4	385.1531066894531	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.833	1	0.56844	0.068437	1.0684	-0.26456								0	0	0	0.8837	1	266	266		0	0	1			+	32490	564	20495	20607	31275	31275					-0.10080181638147678
SYGGGEEA	8	Unmodified	_SYGGGEEA_					0	0	0		CON__P35527;ENSG00000171403|ENST00000246662|KRT9	CON__P35527	CON__P35527	MSMS	HCT116MG_D190212_S4	4	385.1532897949219	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1859	1	2.9214	2.4214	3.4214	-0.26456								0	0	0	0.8837	1	977	977		0	0	1			+	32491	564	20495	20607	31276	31276					-0.10080181638147678
SYHHSPYKQR	10	Unmodified	_SYHHSPYKQR_					0	0	0		PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant	PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant	PDZRN3|p.H870Qfs*17|1|0.5|ENSG00000121440|chr3:73383956-73383956|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	434.8824157714844	3	434.882782	1301.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.752	1	63.513	63.013	64.013	-0.2389								0	0	0	0.96937	1	24031	24031		0.13989	0.04505	1				32492	9740	20496	20608	31277	31277					-0.012230481449705621
SYILNSYK	8	Unmodified	_SYILNSYK_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11;DOCK11|p.K283Rfs*4|1|0.69|ENSG00000147251|chrX:118566153-118566153|A/-|frameshift_variant;DOCK11|p.E284Gfs*9|1|0.24|ENSG00000147251|chrX:118566152-118566153|-/A|frameshift_variant	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MSMS	HCT116MG_D190212_S1	1	494.2611389160156	2	494.260925	986.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.412	1	17.412	16.912	17.912	0								0	0	0	0.8837	1	5924	5924		12.532	2.4576	1				32493	3979	20497	20609	31278	31278					0.01350365177609092
SYIVRVKAVVM	11	Unmodified	_SYIVRVKAVVM_					0	0	0		nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2	nc|ENSG00000198369|Q7Z698-2|SPRED2	nc|ENSG00000198369|Q7Z698-2|SPRED2	MULTI-MSMS	HCT116MG_D190212_S1	1	632.8777465820312	2	632.875933	1263.73731	0.79953	0.000506	2.6393	0.0016704	3.4388	0.0021764	632.8771309950079	54.561	0.30461	54.561	54.384	54.688	0					10	5	3	0	0	0	0.74191	1	20953	20953		2.9952	1.3426	1	69120000			32494	6227	20498	20610	31279	31279					0.11599455518876312
SYKKNKLIKLL	11	Unmodified	_SYKKNKLIKLL_					0	0	0			REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	674.439453125	2	674.439755	1346.86496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.145	1	58.881	58.381	59.381	-0.26405								0	0	0	0.95954	1	22516	22516		1.3295	0.13619	1		+		32495	17847	20499	20611	31280	31280					0.2053991938460058
SYKKNKLIKLL	11	Unmodified	_SYKKNKLIKLL_					0	0	0			REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	674.4397583007812	2	674.439755	1346.86496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.986	1	59.733	59.233	60.233	-0.25367								0	0	0	0.95954	1	22858	22858		1.3295	1.0225	1		+		32496	17847	20499	20611	31281	31281					0.2053991938460058
SYKKNKLIKLL	11	Unmodified	_SYKKNKLIKLL_					0	0	0			REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	REV__tr|U7SVY3|U7SVY3_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01384PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	674.4406127929688	2	674.439755	1346.86496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.601	1	60.354	59.854	60.854	-0.24759								0	0	0	0.95954	1	23109	23109		1.3295	1.0225	1		+		32497	17847	20499	20611	31282	31282					0.2053991938460058
SYKQDQEY	8	Unmodified	_SYKQDQEY_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MSMS	HCT116MG_D190212_S2	2	530.3029174804688	2	530.732729	1059.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.442	1	40.372	39.872	40.872	-0.069626								0	0	0	0.79325	1	15251	15251		23.148	0.41214	1		+		32498	11542	20500	20612	31283	31283					-0.07644307449709231
SYKVVKKRK	9	Unmodified	_SYKVVKKRK_					0	0	0		ENSG00000163535|ENST00000357799|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2	ENSG00000163535|ENST00000357799|SGO2	ENSG00000163535|ENST00000357799|SGO2	MSMS	HCT116MG_D190212_S3	3	379.24859619140625	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.923	1	56.644	56.144	57.144	-0.27913								0	0	0	0.76998	1	21621	21621		0.96228	0.18574	1				32499	4608	20501	20613	31284	31284					0.1617396580197692
SYKVVKKRK	9	Unmodified	_SYKVVKKRK_					0	0	0		ENSG00000163535|ENST00000357799|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2	ENSG00000163535|ENST00000357799|SGO2	ENSG00000163535|ENST00000357799|SGO2	MSMS	HCT116MG_D190212_S3	3	379.2484130859375	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.779	1	61.541	61.041	62.041	-0.2387								0	0	0	0.76995	1	23586	23586		1.0715	0.80244	1				32500	4608	20501	20613	31285	31285					0.1617396580197692
SYKVVKKRK	9	Unmodified	_SYKVVKKRK_					0	0	0		ENSG00000163535|ENST00000357799|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2	ENSG00000163535|ENST00000357799|SGO2	ENSG00000163535|ENST00000357799|SGO2	MSMS	HCT116MG_D190212_S4	4	379.24871826171875	3	379.248514	1134.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.464	1	56.158	55.658	56.658	-0.30626								0	0	0	0.77018	1	21167	21167		0.26902	0.033176	1				32501	4608	20501	20613	31286	31286					0.1617396580197692
SYLGYFGD	8	Unmodified	_SYLGYFGD_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MSMS	HCT116MG_D190212_S2	2	921.3984375	1	921.398875	920.391599	0.69067	0.00063639	-0.42231	-0.00038912	0.26836	0.00024727	921.3979296917131	53.311	0.25764	53.121	52.966	53.223	-0.18922					8	4	2	0	0	0	0.66848	1	20501	20501		26.341	26.341	1	7953800			32502	1112	20502	20614	31287	31287					-0.07178158673241342
SYLGYFGD	8	Unmodified	_SYLGYFGD_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MSMS	HCT116MG_D190212_S3	3	921.3978271484375	1	921.398875	920.391599	0.96218	0.00088655	-0.29945	-0.00027591	0.66273	0.00061064	921.3984478282292	53.416	0.26114	53.113	52.983	53.244	-0.30305					6	4	2	0	0	0	0.66848	1	20247	20247		26.341	6.9023	1	2835800			32503	1112	20502	20614	31288	31288					-0.07178158673241342
SYLGYFGD	8	Unmodified	_SYLGYFGD_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	921.398875	920.391599	0.69067	0.00063639	-0.42231	-0.00038912	0.26836	0.00024727	921.3979296917131	53.311	0.25764	53.121	52.966	53.223	-0.18922	0.0040914	-3.2631E-05	NaN	26.341	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7953800			32504	1112	20502	20614							-0.07178158673241342
SYLRASASSP	10	Unmodified	_SYLRASASSP_					0	0	0			REV__ENST00000565192.1_1_6:31027289-31027466:+|nuORF	REV__ENST00000565192.1_1_6:31027289-31027466:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	519.138916015625	2	519.764363	1037.51417	0.41119	0.00021372	-0.01209	-6.2842E-06	0.3991	0.00020744	519.7643030833442	24.856	0.1571	24.856	24.778	24.935	0					4	2	2	0	0	0	0.30526	1	8899	8899		6.2058	5.4122	1	2738900	+		32505	16531	20503	20615	31289	31289					-0.0030832194181584782
SYLRASASSP	10	Unmodified	_SYLRASASSP_					0	0	0			REV__ENST00000565192.1_1_6:31027289-31027466:+|nuORF	REV__ENST00000565192.1_1_6:31027289-31027466:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	519.764363	1037.51417	0.34587	0.00017977	-0.40597	-0.00021101	-0.060103	-3.1239E-05	519.7642454758345	25.321	0.26036	24.945	24.816	25.076	-0.37521	0.044689	-0.00032628	NaN	6.2058	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8276000	+		32506	16531	20503	20615							-0.0030832194181584782
SYMQLMCHC	9	Unmodified	_SYMQLMCHC_					0	0	0		ENST00000331457.8_1_22:31830005-31830233:+|nuORF	ENST00000331457.8_1_22:31830005-31830233:+|nuORF	ENST00000331457.8_1_22:31830005-31830233:+|nuORF	MSMS	HCT116MG_D190212_S2	2	558.1346435546875	2	558.210683	1114.40681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.747	1	49.583	49.083	50.083	-0.16369								0	0	0	0.76759	1	19048	19048		9.3831	4.6271	1				32507	7160	20504	20616	31290	31290					-0.14581397735196333
SYNAGSAKAV	10	Unmodified	_SYNAGSAKAV_					0	0	0			REV__ENST00000458579.5_1_7:44091436-44097592:+|nuORF	REV__ENST00000458579.5_1_7:44091436-44097592:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	483.7300109863281	2	484.245806	966.47706	0.098013	4.7463E-05	0.090041	4.3602E-05	0.18805	9.1065E-05	484.24577845675884	30.933	0.15538	30.666	30.56	30.716	-0.26704					4	2	2	0	0	0	0.27462	1	11352	11352		24.021	8.1734	1	2973100	+		32508	12125	20505	20617	31291	31291					-0.00751993487585878
SYPDRYSCR	9	Unmodified	_SYPDRYSCR_					0	0	0			REV__ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant	REV__ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	383.1725769042969	3	382.838074	1145.49239	-0.046616	-1.7846E-05	0.28494	0.00010909	0.23833	9.1241E-05	382.8381419326148	14.447	0.20789	14.447	14.338	14.546	0					7	3	3	0	0	0	0.71898	1	4763	4763		2.2828	0	1	2474800	+		32509	9856	20506	20618	31292	31292					-0.074534499620313
SYPMWIKKL	9	Unmodified	_SYPMWIKKL_					0	0	0			REV__ENST00000490115.5_1_3:48586091-48594264:-|nuORF	REV__ENST00000490115.5_1_3:48586091-48594264:-|nuORF	MSMS	HCT116MG_D190212_S4	4	583.3240356445312	2	583.325545	1164.63654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.349	1	62.1	61.6	62.6	-0.24919								0	0	0	0.7701	1	23542	23542		0.52476	0.52476	1		+		32510	11505	20507	20619	31293	31293					0.06080423536059243
SYRFDGPSPG	10	Unmodified	_SYRFDGPSPG_					0	0	0			REV__ENSG00000185303|ENST00000372325|SFTPA2	REV__ENSG00000185303|ENST00000372325|SFTPA2	MSMS	HCT116MG_D190212_S4	4	541.7509155273438	2	541.748713	1081.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.321	1	18.141	17.641	18.641	-0.18052								0	0	0	0.86471	1	6141	6141		20.454	3.3407	1		+		32511	13841	20508	20620	31294	31294					-0.05460894975908559
SYRKFCWFEKK	11	Unmodified	_SYRKFCWFEKK_					0	0	0			REV__MICU3|p.L258Wfs*57|1|0.1|ENSG00000155970|chr8:17085310-17085310|T/-|frameshift_variant	REV__MICU3|p.L258Wfs*57|1|0.1|ENSG00000155970|chr8:17085310-17085310|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	761.3862915039062	2	761.387197	1520.75984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.997	1	33.822	33.322	34.322	-0.17512								0	0	0	0.95273	1	12634	12634		4.897	0.36815	1		+		32512	17028	20509	20621	31295	31295					0.020290549164883487
SYRLNTHVKPL	11	Unmodified	_SYRLNTHVKPL_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MSMS	HCT116MG_D190212_S3	3	664.3751831054688	2	664.377686	1326.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.881	1	38.58	38.08	39.08	-0.30137								0	0	0	0.95023	1	14418	14418		6.2058	2.2614	1				32513	1280	20510	20622	31296	31296					0.09051841617133505
SYSDQLLTL	9	Unmodified	_SYSDQLLTL_					0	0	0			REV__ENST00000540964.5_1_1:223310562-223310604:-|nuORF	REV__ENST00000540964.5_1_1:223310562-223310604:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1039.53173828125	1	1039.53062	1038.52334	0.90645	0.00094228	-0.22515	-0.00023405	0.68131	0.00070824	1039.5302060787628	52.355	0.41275	52.168	51.986	52.399	-0.18725					15	7	3	0	0	0	0.049545	1	20103	20103		74.929	3.0067	1	93528000	+		32514	16365	20511	20623	31297	31297					0.005620266238793192
SYSGGGYG	8	Unmodified	_SYSGGGYG_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	HCT116MG_D190212_S4	4	747.2962646484375	1	747.29441	746.287133	0.82764	0.00061849	-0.020425	-1.5263E-05	0.80722	0.00060323	747.2945608979006	32.855	1.7133	32.476	30.859	32.572	-0.37923					41	32	2	0	0	0	0.86564	1	11836	11836		2.5775	0	1	3295600			32515	3376	20512	20624	31298	31298					-0.09615860429937584
SYSGGGYG	8	Unmodified	_SYSGGGYG_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000135829|Q08211-2|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	747.29441	746.287133	0.65819	0.00049186	0.10549	7.8832E-05	0.76368	0.00057069	747.2943874371233	32.762	0.72915	32.477	31.935	32.664	-0.28511	0.0005656	7.9787E-05	NaN	2.5775	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3065100			32516	3376	20512	20624							-0.09615860429937584
SYSQREHSV	9	Unmodified	_SYSQREHSV_					0	0	0		ALMS1|p.P1852S|1|0.43|ENSG00000116127|chr2:73452081-73452081|C/T|missense_variant	ALMS1|p.P1852S|1|0.43|ENSG00000116127|chr2:73452081-73452081|C/T|missense_variant	ALMS1|p.P1852S|1|0.43|ENSG00000116127|chr2:73452081-73452081|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	546.760986328125	2	546.757069	1091.49959	0.50944	0.00027854	2.3568	0.0012886	2.8662	0.0015671	547.2585286005301	26.391	0.93654	26.029	25.713	26.65	-0.36164					37	17	3	0	0	0	0.41514	1	9538	9538		21.747	0	1	22361000			32517	98	20513	20625	31299	31299					-0.042503940899450754
SYWCWEDMS	9	Unmodified	_SYWCWEDMS_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MSMS	HCT116MG_D190212_S3	3	402.8111877441406	3	402.812537	1205.41578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.587	1	19.647	19.147	20.147	0.05983								0	0	0	0.76902	1	6725	6725		2.4985	0	1				32518	1500	20514	20626	31300	31300					-0.17871009573536867
SYWYRARLHQR	11	Unmodified	_SYWYRARLHQR_					0	0	0		ENST00000462116.5_1_1:155032691-155033592:+|nuORF;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-7|ADAM15;ENST00000498481.6_1_1:155030770-155034829:+|nuORF;nc|ENSG00000143537|Q13444-2|ADAM15;ADAM15|p.P770Lfs*35|1|0.45|ENSG00000143537|chr1:155061440-155061440|C/-|frameshift_variant;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-11|ADAM15;ENSG00000143537|ENST00000356955|ADAM15	ENST00000462116.5_1_1:155032691-155033592:+|nuORF	ENST00000462116.5_1_1:155032691-155033592:+|nuORF	MSMS	HCT116MG_D190212_S1	1	768.4016723632812	2	768.402558	1534.79056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.346	1	39.346	38.846	39.846	0								0	0	0	0.95636	1	14757	14757		2.9952	0.71247	1				32519	34	20515	20627	31301	31301					0.04455969345781341
SYYPYPNLRWD	11	Unmodified	_SYYPYPNLRWD_					0	0	0		nc|ENSG00000164972|Q8NCR6-4|SPMIP6;ENST00000481295.5_1_9:34379076-34379756:-|nuORF;nc|ENSG00000164972|Q8NCR6-3|SPMIP6	nc|ENSG00000164972|Q8NCR6-4|SPMIP6	nc|ENSG00000164972|Q8NCR6-4|SPMIP6	MSMS	HCT116MG_D190212_S4	4	491.89678955078125	3	491.898098	1472.67246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.349	1	21.133	20.633	21.633	-0.21678								0	0	0	0.94789	1	7365	7365		7.4291	1.9058	1				32520	9529	20516	20628	31302	31302					-0.04496447753422217
TAAAAAQVQAP	11	Unmodified	_TAAAAAQVQAP_					0	0	0			REV__NLK|p.F192Lfs*30|1|0.11|ENSG00000087095|chr17:28122714-28122714|T/-|frameshift_variant	REV__NLK|p.F192Lfs*30|1|0.11|ENSG00000087095|chr17:28122714-28122714|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	499.7671203613281	2	499.766906	997.519259	0.3797	0.00018976	0.067216	3.3592E-05	0.44692	0.00022335	499.76686562257373	16.052	0.2079	16.137	15.977	16.185	0.085423					5	3	2	0	0	0	0.69749	1	5303	5303		22.736	0.98964	1	994970	+		32521	10944	20517	20629	31303	31303					0.020399819207909786
TAAAAKFPRR	10	Unmodified	_TAAAAKFPRR_					0	0	0		ENST00000341259.6_1_12:111843787-111843931:+|nuORF	ENST00000341259.6_1_12:111843787-111843931:+|nuORF	ENST00000341259.6_1_12:111843787-111843931:+|nuORF	MSMS	HCT116MG_D190212_S4	4	544.8196411132812	2	544.819807	1087.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.813	1	17.638	17.138	18.138	-0.17501								0	0	0	0.87399	1	5936	5936		19.257	1.1106	1				32522	7219	20518	20630	31304	31304					0.08475362556941946
TAAAELLAE	9	Unmodified	_TAAAELLAE_					0	0	0			REV__ENST00000559367.1_1_4:74034679-74088744:-|nuORF	REV__ENST00000559367.1_1_4:74034679-74088744:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	444.2968444824219	2	444.737283	887.460012	-0.14315	-6.3663E-05	-3.6283	-0.0016136	-3.7714	-0.0016773	444.73660759197827	18.762	0.62495	18.399	18.269	18.894	-0.36325					14	11	3	0	0	0	0.66792	1	6612	6612		7.2892	0	1	9035600	+		32523	16478	20519	20631	31305	31305					0.011780859066220728
TAAAFKLMA	9	Unmodified	_TAAAFKLMA_					0	0	0			REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	MSMS	HCT116MG_D190212_S3	3	462.1466369628906	2	462.254588	922.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.851	1	26.7	26.2	27.2	-0.15108								0	0	0	0.76818	1	9651	9651		7.2892	1.5288	1		+		32524	16025	20520	20632	31306	31306					0.03027630513713575
TAAAFKLMA	9	Unmodified	_TAAAFKLMA_					0	0	0			REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF	MSMS	HCT116MG_D190212_S4	4	462.1466369628906	2	462.254588	922.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.142	1	21.914	21.414	22.414	-0.22777								0	0	0	0.76575	1	7685	7685		15.847	4.2069	1		+		32525	16025	20520	20632	31307	31307					0.03027630513713575
TAAAGPEDRC	10	Unmodified	_TAAAGPEDRC_					0	0	0		ENST00000432031.6_1_2:179315212-179315317:-|nuORF	ENST00000432031.6_1_2:179315212-179315317:-|nuORF	ENST00000432031.6_1_2:179315212-179315317:-|nuORF	MSMS	HCT116MG_D190212_S4	4	495.74554443359375	2	495.719098	989.423644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.555	1	21.337	20.837	21.837	-0.21832								0	0	0	0.92607	1	7448	7448		10.074	0.6908	1				32526	7860	20521	20633	31308	31308					-0.0714911426175604
TAAAGSLPRAP	11	Unmodified	_TAAAGSLPRAP_					0	0	0			REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	REV__CPEB2|p.C544Lfs*12|1|0.1|ENSG00000137449|chr4:15066233-15066234|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	506.28057861328125	2	506.282723	1010.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.074	1	31.796	31.296	32.296	-0.27841								0	0	0	0.94416	1	11742	11742		9.3831	0.78985	1		+		32527	10284	20522	20634	31309	31309					0.04603974674739675
TAAAGWHWDP	10	Unmodified	_TAAAGWHWDP_					0	0	0			REV__WNT1|p.G169Afs*30|9|0.3|ENSG00000125084|chr12:48980565-48980565|G/-|frameshift_variant	REV__WNT1|p.G169Afs*30|9|0.3|ENSG00000125084|chr12:48980565-48980565|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	556.2611694335938	2	556.251423	1110.48829	0.21283	0.00011839	-1.8421	-0.0010246	-1.6292	-0.00090626	556.2503156944217	22.949	0.20795	22.711	22.55	22.758	-0.23758					6	3	2	0	0	0	0.76634	1	7974	7974		14.838	1.7958	1	1970400	+		32528	18057	20523	20635	31310	31310					-0.0625317139345043
TAAAKTSRQEC	11	Unmodified	_TAAAKTSRQEC_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	HCT116MG_D190212_S3	3	583.2857055664062	2	583.285137	1164.55572	0.39144	0.00022832	0.28471	0.00016607	0.67616	0.00039439	583.2853003495151	15.866	0.15605	15.951	15.873	16.029	0.085423					4	2	2	0	0	0	0.73536	1	5245	5245		8.7454	2.0222	1	3385200			32529	6131	20524	20636	31311	31311					-0.01997509244779394
TAAALGAEHAG	11	Unmodified	_TAAALGAEHAG_					0	0	0		ENST00000551286.1_2_12:56708726-56709700:-|nuORF	ENST00000551286.1_2_12:56708726-56709700:-|nuORF	ENST00000551286.1_2_12:56708726-56709700:-|nuORF	MSMS	HCT116MG_D190212_S4	4	484.7449645996094	2	484.743431	967.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.108	1	37.725	37.225	38.225	-0.38283								0	0	0	0.9387	1	13954	13954		12.241	0.60036	1				32530	8757	20525	20637	31312	31312					-0.012728776303447376
TAAAMIEQ	8	Unmodified	_TAAAMIEQ_					0	0	0			REV__ENST00000470474.1_1_3:11314090-11340334:+|nuORF	REV__ENST00000470474.1_1_3:11314090-11340334:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	418.26458740234375	2	417.704928	833.395304	0.084634	3.5352E-05	0.027813	1.1617E-05	0.11245	4.697E-05	417.70482736484286	28.386	0.26093	28.18	28.02	28.281	-0.20593					6	4	2	0	0	0	0.30703	1	10305	10305		4.3292	0.38484	1	1845000	+		32531	15863	20526	20638	31313	31313					-0.028058121710273554
TAAAQRGPS	9	Unmodified	_TAAAQRGPS_					0	0	0		ENST00000547182.1_1_12:49954113-49956838:-|nuORF	ENST00000547182.1_1_12:49954113-49956838:-|nuORF	ENST00000547182.1_1_12:49954113-49956838:-|nuORF	MSMS	HCT116MG_D190212_S3	3	429.7249450683594	2	429.725041	857.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.015	1	20.063	19.563	20.563	0.048107								0	0	0	0.74436	1	6898	6898		16.942	0	1				32532	8730	20527	20639	31314	31314					0.001108705437673052
TAAARAIFP	9	Unmodified	_TAAARAIFP_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	HCT116MG_D190212_S3	3	459.280029296875	2	459.263802	916.513051	0.41862	0.00019225	-0.061961	-2.8456E-05	0.35665	0.0001638	459.2636722059433	33.779	0.20734	33.489	33.408	33.615	-0.29013					8	3	3	0	0	0	0.25723	1	12379	12379		0.45834	0	1	6256300			32533	4842	20528	20640	31315	31315					0.0514550847992723
TAAARPFRR	9	Unmodified	_TAAARPFRR_					0	0	0		ENST00000466989.1_1_1:150463888-150464139:+|nuORF;ENST00000467982.6_1_1:150463888-150471031:+|nuORF;nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	ENST00000466989.1_1_1:150463888-150464139:+|nuORF	ENST00000466989.1_1_1:150463888-150464139:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	523.3040161132812	2	523.304324	1044.5941	0.39368	0.00020601	-1.1823	-0.00061868	-0.78859	-0.00041267	523.3036940990446	17.196	0.2082	16.847	16.717	16.925	-0.34933					5	3	2	0	0	0	0.59184	1	5867	5867		11.64	0.81637	1	4164600			32534	3805	20529	20641	31316	31316					0.07358209242693192
TAAARTPHT	9	Unmodified	_TAAARTPHT_					0	0	0		ILDR1|p.R453Gfs*127|1|0.4|ENSG00000145103|chr3:121993392-121993392|G/-|frameshift_variant	ILDR1|p.R453Gfs*127|1|0.4|ENSG00000145103|chr3:121993392-121993392|G/-|frameshift_variant	ILDR1|p.R453Gfs*127|1|0.4|ENSG00000145103|chr3:121993392-121993392|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	463.22222900390625	2	463.246141	924.477728	0.10119	4.6875E-05	0.01502	6.9579E-06	0.11621	5.3833E-05	463.2461316904218	17.738	0.26033	17.82	17.69	17.95	0.081358					8	4	2	0	0	0	0.18552	1	5986	5986		30.637	0	1	5199700			32535	9240	20530	20642	31317	31317					0.01246845952118747
TAAASGGRLVP	11	Unmodified	_TAAASGGRLVP_					0	0	0			REV__ENST00000490857.5_1_2:228211900-228221830:+|nuORF	REV__ENST00000490857.5_1_2:228211900-228221830:+|nuORF	MSMS	HCT116MG_D190212_S3	3	500.2593994140625	2	500.282723	998.550893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.666	1	18.735	18.235	19.235	0.069159								0	0	0	0.93552	1	6354	6354		13.906	2.2658	1		+		32536	13217	20531	20643	31318	31318					0.05155974674744357
TAAASSWRR	9	Unmodified	_TAAASSWRR_					0	0	0		ENST00000567700.5_1_16:1832933-1836988:+|nuORF	ENST00000567700.5_1_16:1832933-1836988:+|nuORF	ENST00000567700.5_1_16:1832933-1836988:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	503.1075439453125	2	503.264865	1004.51518	0.47635	0.00023973	0.61243	0.00030821	1.0888	0.00054794	503.2650248872623	16.866	0.25997	16.524	16.36	16.62	-0.34183					6	4	2	0	0	0	0.25874	1	5696	5696		1.6526	0	1	1948100			32537	8869	20532	20644	31319	31319					0.013099372177521218
TAAASTTEVP	10	Unmodified	_TAAASTTEVP_					0	0	0		nc|ENSG00000235865|Q9NRJ2|GSN-AS1	nc|ENSG00000235865|Q9NRJ2|GSN-AS1	nc|ENSG00000235865|Q9NRJ2|GSN-AS1	MULTI-MSMS	HCT116MG_D190212_S3	3	474.7784118652344	2	474.237647	946.460741	0.13506	6.4049E-05	0.081353	3.8581E-05	0.21641	0.00010263	474.23759859116205	23.015	1.3941	22.987	22.273	23.668	-0.028095					77	26	4	0	0	0	0.61891	1	8251	8251		26.884	1.4843	1	138990000			32538	9646	20533	20645	31320	31320					-0.014631194443268214
TAAATGATRPP	11	Unmodified	_TAAATGATRPP_					0	0	0			REV__ADAM8|p.E428Rfs*32|1|0.29|ENSG00000151651|chr10:133271531-133271531|G/-|frameshift_variant	REV__ADAM8|p.E428Rfs*32|1|0.29|ENSG00000151651|chr10:133271531-133271531|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	507.5750732421875	2	507.272355	1012.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.171	1	20.22	19.72	20.72	0.048107								0	0	0	0.93552	1	6961	6961		13.906	1.3745	1		+		32539	9853	20534	20646	31321	31321					0.024393842950871658
TAAATRGLRPR	11	Unmodified	_TAAATRGLRPR_					0	0	0		ENST00000262803.9_1_19:18942854-18943019:+|nuORF	ENST00000262803.9_1_19:18942854-18943019:+|nuORF	ENST00000262803.9_1_19:18942854-18943019:+|nuORF	MSMS	HCT116MG_D190212_S1	1	585.7223510742188	2	585.34672	1168.67889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.487	1	14.487	13.987	14.987	0								0	0	0	0.93717	1	4745	4745		13.042	2.2185	1				32540	6870	20535	20647	31322	31322					0.10129534988641353
TAAAVWEMF	9	Unmodified	_TAAAVWEMF_					0	0	0		ENSG00000166558|ENST00000299709|SLC38A8	ENSG00000166558|ENST00000299709|SLC38A8	ENSG00000166558|ENST00000299709|SLC38A8	MSMS	HCT116MG_D190212_S4	4	513.2431640625	2	513.241678	1024.4688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.825	1	24.556	24.056	25.056	-0.26881								0	0	0	0.74436	1	8767	8767		16.942	1.0951	1				32541	4865	20536	20648	31323	31323					-0.04245263728569171
TAADAQPKQY	10	Unmodified	_TAADAQPKQY_					0	0	0			REV__KIAA0146-ANK1|4|fusion	REV__KIAA0146-ANK1|4|fusion	MSMS	HCT116MG_D190212_S3	3	546.7822875976562	2	546.769645	1091.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.701	1	32.416	31.916	32.916	-0.28511								0	0	0	0.90475	1	11995	11995		14.838	0.93222	1		+		32542	16925	20537	20649	31324	31324					-0.017363392873676275
TAADLGLCTT	10	Unmodified	_TAADLGLCTT_					0	0	0		ENST00000497138.5_1_20:56820862-56820964:-|nuORF	ENST00000497138.5_1_20:56820862-56820964:-|nuORF	ENST00000497138.5_1_20:56820862-56820964:-|nuORF	MSMS	HCT116MG_D190212_S3	3	483.23541259765625	2	483.23405	964.453547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.714	1	26.565	26.065	27.065	-0.14924								0	0	0	0.82636	1	9596	9596		25.399	6.1423	1				32543	8397	20538	20650	31325	31325					-0.030101753164103684
TAAEEGAQERP	11	Unmodified	_TAAEEGAQERP_					0	0	0		nc|ENSG00000160753|Q9BVN2-4|RUSC1;ENSG00000160753|ENST00000368352|RUSC1;nc|ENSG00000160753|Q9BVN2-2|RUSC1;nc|ENSG00000160753|Q9BVN2-3|RUSC1	nc|ENSG00000160753|Q9BVN2-4|RUSC1	nc|ENSG00000160753|Q9BVN2-4|RUSC1	MULTI-MSMS	HCT116MG_D190212_S4	4	579.7467041015625	2	579.772916	1157.53128	0.28788	0.00016691	2.8974	0.0016798	3.1853	0.0018467	579.7745396319216	20.995	0.41508	20.785	20.604	21.019	-0.20959					10	7	2	0	0	0	0.73536	1	7171	7171		8.7454	2.0222	1	6689300			32544	4462	20539	20651	31326	31326					-0.041184461266539074
TAAEESWDY	9	Unmodified	_TAAEESWDY_					0	0	0		ENST00000596426.5_1_19:49838791-49841436:+|nuORF;ENST00000391859.6_1_19:49841166-49843582:+|nuORF;nc|ENSG00000104894|P11049-3|CD37;nc|ENSG00000104894|P11049-2|CD37;ENSG00000104894|ENST00000323906|CD37	ENST00000596426.5_1_19:49838791-49841436:+|nuORF	ENST00000596426.5_1_19:49838791-49841436:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	536.1654052734375	2	536.216911	1070.41927	0.7201	0.00038613	4.2379	0.0022724	4.958	0.0026586	536.2192871547401	32.819	0.26053	32.534	32.352	32.612	-0.28511					5	4	2	0	0	0	0.25723	1	12002	12002		1.8442	0	1	1770800			32545	1965	20540	20652	31327	31327					-0.11312300203644554
TAAEGERAGC	10	Unmodified	_TAAEGERAGC_					0	0	0		ENST00000309733.5_1_4:113066558-113107853:+|nuORF	ENST00000309733.5_1_4:113066558-113107853:+|nuORF	ENST00000309733.5_1_4:113066558-113107853:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7111511230469	2	482.711273	963.407994	0.16662	8.043E-05	0.15227	7.3503E-05	0.31889	0.00015393	482.7113044961558	19.793	0.25931	19.418	19.298	19.558	-0.37503					7	4	2	0	0	0	0.72678	1	6924	6924		18.146	2.2992	1	5151700			32546	7042	20541	20653	31328	31328					-0.07517400778795036
TAAEIVLQA	9	Unmodified	_TAAEIVLQA_					0	0	0			REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	REV__tr|U7SLI9|U7SLI9_FUSNUPolysaccharidebiosynthesisproteinCapD-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01946PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	458.2599792480469	2	458.260925	914.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.557	1	21.339	20.839	21.839	-0.21832								0	0	0	0.76818	1	7449	7449		7.2892	0.56607	1		+		32547	17708	20542	20654	31329	31329					0.04662365177603078
TAAEKPEPRPP	11	Unmodified	_TAAEKPEPRPP_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4	REV__ENSG00000109920|ENST00000263773|FNBP4	MULTI-MSMS	HCT116MG_D190212_S3	3	596.94580078125	2	596.81967	1191.62479	0.49637	0.00029625	-0.82614	-0.00049306	-0.32977	-0.00019681	597.320596768752	31.072	0.15656	30.811	30.709	30.865	-0.26071					4	2	2	0	0	0	0.72139	1	11339	11339		13.906	1.6654	1	1468900	+		32548	11385	20543	20655	31330	31330					0.036638980464203996
TAAEKPEPRPP	11	Unmodified	_TAAEKPEPRPP_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4	REV__ENSG00000109920|ENST00000263773|FNBP4	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	596.81967	1191.62479	0.49637	0.00029625	-0.82614	-0.00049306	-0.32977	-0.00019681	597.320596768752	31.072	0.15656	30.811	30.709	30.865	-0.26071	0.010902	0.00037649	NaN	13.906	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468900	+		32549	11385	20543	20655							0.036638980464203996
TAAERWEA	8	Unmodified	_TAAERWEA_					0	0	0		ENST00000323443.6_1_15:42840863-42840944:-|nuORF	ENST00000323443.6_1_15:42840863-42840944:-|nuORF	ENST00000323443.6_1_15:42840863-42840944:-|nuORF	MSMS	HCT116MG_D190212_S2	2	467.2241516113281	2	467.224874	932.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.766	1	26.413	25.913	26.913	-0.35254								0	0	0	0.76512	1	9698	9698		25.399	0.72543	1				32550	7117	20544	20656	31331	31331					-0.033725491761060766
TAAFGARDSGE	11	Unmodified	_TAAFGARDSGE_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B;SETD1B|p.S561Rfs*47|1|0.46|ENSG00000139718|chr12:121810620-121810620|C/-|frameshift_variant;SETD1B|p.A1222Hfs*53|1|0.21|ENSG00000139718|chr12:121819645-121819645|G/-|frameshift_variant;SETD1B|p.L1532Ffs*35|1|0.12|ENSG00000139718|chr12:121823172-121823173|-/T|frameshift_variant;SETD1B|p.Q1589Sfs*11|3|0.38|ENSG00000139718|chr12:121823338-121823338|C/-|frameshift_variant	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	HCT116MG_D190212_S4	4	541.2493286132812	2	541.249077	1080.4836	0.37464	0.00020278	0.41671	0.00022554	0.79135	0.00042832	541.2494739617883	23.583	0.2601	23.335	23.168	23.428	-0.24775					8	4	2	0	0	0	0.62391	1	8278	8278		32.786	0	1	3451300			32551	3642	20545	20657	31332	31332					-0.0534210032685678
TAAFTHCFIH	10	Unmodified	_TAAFTHCFIH_					0	0	0		nc|ENSG00000163867|O95789-5|ZMYM6;ENST00000493328.5_1_1:35452707-35454621:-|nuORF;ZMYM6|p.N1298Ifs*9|1|0.15|ENSG00000163867|chr1:34987189-34987189|T/-|frameshift_variant;ENSG00000163867|ENST00000357182|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	MSMS	HCT116MG_D190212_S4	4	574.2713012695312	2	574.271301	1146.52805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.51	1	16.344	15.844	16.844	-0.16664								0	0	0	0.94107	1	5409	5409		6.7232	1.9672	1				32552	8359	20546	20658	31333	31333					-0.039353677143481036
TAAGADDSIQ	10	Unmodified	_TAAGADDSIQ_					0	0	0			REV__KRT27|p.T297A|1|0.1|ENSG00000171446|chr17:40779585-40779585|T/C|missense_variant	REV__KRT27|p.T297A|1|0.1|ENSG00000171446|chr17:40779585-40779585|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	474.7170715332031	2	474.717079	947.419604	0.2269	0.00010771	2.0014	0.0009501	2.2283	0.0010578	474.71718916565015	17.983	0.83125	17.808	17.22	18.051	-0.17501					23	15	2	0	0	0	0.76634	1	5985	5985		14.838	0	1	1637600	+		32553	16936	20547	20659	31334	31334					-0.05620880483797919
TAAGGRCAHW	10	Unmodified	_TAAGGRCAHW_					0	0	0		ENST00000497036.5_1_22:50688078-50688743:-|nuORF;ENST00000216271.9_1_22:50688078-50689256:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF	ENST00000497036.5_1_22:50688078-50688743:-|nuORF	ENST00000497036.5_1_22:50688078-50688743:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	515.2369995117188	2	515.237793	1028.46103	0.29906	0.00015409	-1.2782	-0.00065859	-0.97916	-0.0005045	515.2370446047187	24.969	0.88515	24.864	24.476	25.361	-0.1051					21	16	2	0	0	0	0.81435	1	9057	9057		10.824	0.75	1	2735300			32554	6739	20548	20660	31335	31335					-0.052059782054811876
TAAGPERAPHV	11	Unmodified	_TAAGPERAPHV_					0	0	0			REV__ENST00000435359.5_1_17:2604913-2604988:-|nuORF	REV__ENST00000435359.5_1_17:2604913-2604988:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	555.7727661132812	2	553.291079	1104.56761	0.47587	0.00026329	0.048459	2.6812E-05	0.52433	0.00029011	553.2910400715302	20.788	1.6578	20.578	19.517	21.175	-0.20959					89	31	5	0	0	0	0.69749	1	7132	7132		22.736	2.3217	1	129920000	+		32555	15617	20549	20661	31336	31336					0.019504755606931212
TAAGPSRPDP	10	Unmodified	_TAAGPSRPDP_					0	0	0			REV__ENST00000379977.7_3_10:6008214-6019471:-|nuORF	REV__ENST00000379977.7_3_10:6008214-6019471:-|nuORF	MSMS	HCT116MG_D190212_S3	3	484.7433166503906	2	484.743431	967.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.91	1	20.944	20.444	21.444	0.034473								0	0	0	0.78574	1	7259	7259		30.637	7.4881	1		+		32556	15265	20550	20662	31337	31337					-0.012728776303447376
TAAGSRCH	8	Unmodified	_TAAGSRCH_					0	0	0		nc|ENSG00000234465|A6NC86-3|PINLYP;ENST00000244321.10_1_19:44081271-44083028:+|nuORF;ENSG00000234465|ENST00000599207|PINLYP;nc|ENSG00000234465|A6NC86-2|PINLYP	nc|ENSG00000234465|A6NC86-3|PINLYP	nc|ENSG00000234465|A6NC86-3|PINLYP	MULTI-MSMS	HCT116MG_D190212_S2	2	804.4469604492188	1	802.362447	801.35517	1.2055	0.00096724	-0.9087	-0.00072911	0.29679	0.00023814	802.3615633897037	33.341	0.36064	33.148	32.966	33.327	-0.19297					13	6	3	0	0	0	0.73076	1	12337	12337		19.439	10.092	1	108390000			32557	6519	20551	20663	31338	31338					-0.05345314050941852
TAAGSRCH	8	Unmodified	_TAAGSRCH_					0	0	0		nc|ENSG00000234465|A6NC86-3|PINLYP;ENST00000244321.10_1_19:44081271-44083028:+|nuORF;ENSG00000234465|ENST00000599207|PINLYP;nc|ENSG00000234465|A6NC86-2|PINLYP	nc|ENSG00000234465|A6NC86-3|PINLYP	nc|ENSG00000234465|A6NC86-3|PINLYP	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	802.362447	801.35517	0.84187	0.00067548	-1.1969	-0.00096036	-0.35505	-0.00028488	802.3612610608355	33.568	0.36305	33.278	33.096	33.459	-0.29013	0.06458	-0.00011167	NaN	19.439	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18063000			32558	6519	20551	20663							-0.05345314050941852
TAAGYTTLE	9	Unmodified	_TAAGYTTLE_					0	0	0		nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	MSMS	HCT116MG_D190212_S4	4	463.7259826660156	2	463.726915	925.439277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.366	1	18.186	17.686	18.686	-0.18052								0	0	0	0.76818	1	6159	6159		7.2892	0.93513	1				32559	2501	20552	20664	31339	31339					-0.02642504473055851
TAAHCIFWK	9	Unmodified	_TAAHCIFWK_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MSMS	HCT116MG_D190212_S4	4	538.772705078125	2	538.770937	1075.52732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.621	1	27.299	26.799	27.799	-0.32157								0	0	0	0.76818	1	9896	9896		7.2892	0.56607	1				32560	9596	20553	20665	31340	31340					-0.007421623634172647
TAAHFHEPP	9	Unmodified	_TAAHFHEPP_					0	0	0		ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	MSMS	HCT116MG_D190212_S3	3	503.7430419921875	2	503.740691	1005.46683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.15	1	16.235	15.735	16.735	0.085424								0	0	0	0.76694	1	5338	5338		11.64	0	1				32561	2785	20554	20666	31341	31341					-0.03568556422146685
TAAHPSNTGAA	11	Unmodified	_TAAHPSNTGAA_					0	0	0		WFDC8|p.N103Tfs*34|1|0.28|ENSG00000158901|chr20:45555838-45555838|T/-|frameshift_variant	WFDC8|p.N103Tfs*34|1|0.28|ENSG00000158901|chr20:45555838-45555838|T/-|frameshift_variant	WFDC8|p.N103Tfs*34|1|0.28|ENSG00000158901|chr20:45555838-45555838|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	499.2386474609375	2	499.238513	996.462472	0.32084	0.00016017	0.79823	0.00039851	1.1191	0.00055868	499.2388119849957	16.422	0.36397	16.508	16.341	16.705	0.085424					9	6	2	0	0	0	0.7093	1	5480	5480		18.373	1.2602	1	1666400			32562	18694	20555	20667	31342	31342					-0.0359006563571711
TAAIGDTQLSP	11	Unmodified	_TAAIGDTQLSP_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	HCT116MG_D190212_S2	2	537.2791748046875	2	537.277303	1072.54005	0.5479	0.00029437	3.4062	0.0018301	3.9541	0.0021245	537.2789202391849	22.24	0.312	21.855	21.635	21.947	-0.38521					6	5	2	0	0	0	0.35748	1	7891	7891		2.4985	0	1	5678100	+		32563	12515	20556	20668	31343	31343					0.006685275098107013
TAAISCSAFA	10	Unmodified	_TAAISCSAFA_					0	0	0			REV__ENST00000448973.6_1_16:685482-685995:-|nuORF	REV__ENST00000448973.6_1_16:685482-685995:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	470.7222900390625	2	471.223485	940.432418	0.25029	0.00011794	0.28541	0.00013449	0.5357	0.00025243	471.2237355196265	22.194	0.20893	22.194	22.063	22.272	0					5	3	2	0	0	0	0.30526	1	7867	7867		6.2058	1.8765	1	3386600	+		32564	15697	20557	20669	31344	31344					-0.040181406252713714
TAAKKKLK	8	Unmodified	_TAAKKKLK_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MSMS	HCT116MG_D190212_S3	3	444.3067932128906	2	444.30547	886.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.023	1	22.023	21.523	22.523	0.00074577								0	0	0	0.8837	1	7704	7704		2.3027	1.5091	1		+		32565	14137	20558	20670	31345	31345					0.14855244927787226
TAAKRAPL	8	Unmodified	_TAAKRAPL_					0	0	0			REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF	REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF	MSMS	HCT116MG_D190212_S1	1	414.259521484375	2	414.25852	826.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.282	1	16.282	15.782	16.782	0								0	0	0	0.8837	1	5469	5469		9.3474	2.9933	1		+		32566	16294	20559	20671	31346	31346					0.08229525825504425
TAAKRAPL	8	Unmodified	_TAAKRAPL_					0	0	0			REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF	REV__ENST00000528026.5_1_11:64879487-64882206:+|nuORF	MSMS	HCT116MG_D190212_S2	2	414.259765625	2	414.25852	826.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.109	1	17.752	17.252	18.252	-0.35647								0	0	0	0.8837	1	6204	6204		5.2307	0.47466	1		+		32567	16294	20559	20671	31347	31347					0.08229525825504425
TAALCYHLP	9	Unmodified	_TAALCYHLP_					0	0	0			REV__MAMLD1|p.Q696Rfs*451|1|0.07|ENSG00000013619|chrX:150503315-150503315|C/-|frameshift_variant	REV__MAMLD1|p.Q696Rfs*451|1|0.07|ENSG00000013619|chrX:150503315-150503315|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	495.22137451171875	2	494.74967	987.484787	0.20479	0.00010132	3.7392	0.00185	3.944	0.0019513	494.75106777095334	21.476	0.21154	21.494	21.377	21.588	0.018446					6	3	2	0	0	0	0.22781	1	7513	7513		3.9444	0	1	1679900	+		32568	17001	20560	20672	31348	31348					-0.009455574916501064
TAALEQCV	8	Unmodified	_TAALEQCV_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-SECPEP	HCT116MG_D190212_S4	4	418.2646789550781	2	417.704928	833.395304	0.12033	5.0263E-05	-0.026842	-1.1212E-05	0.093489	3.9051E-05	417.7046606602108	28.578	0.15551	28.246	28.168	28.324	-0.33138					4	2	2	0	0	0	0.31855	1	10264	10264		4.756	0.81161	1	1421600			32569	1176	20561	20673	31349	31349					-0.02805812171038724
TAALGHDLDGQ	11	Unmodified	_TAALGHDLDGQ_					0	0	0		ENST00000486702.1_1_7:99768818-99769832:-|nuORF;ENSG00000213420|ENST00000292377|GPC2	ENST00000486702.1_1_7:99768818-99769832:-|nuORF	ENST00000486702.1_1_7:99768818-99769832:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2658081054688	2	549.264727	1096.5149	0.34462	0.00018929	0.095445	5.2424E-05	0.44007	0.00024171	549.2650469732168	16.217	0.52237	15.882	15.637	16.159	-0.33451					16	9	3	0	0	0	0.71776	1	5455	5455		15.248	0.8431	1	1929900			32570	6412	20562	20674	31350	31350					-0.029495272927761107
TAALGKAN	8	Unmodified	_TAALGKAN_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000530163.1_1_11:74340223-74351808:+|nuORF;nc|ENSG00000077514|Q15054-3|POLD3;nc|ENSG00000077514|Q15054-2|POLD3	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-MSMS	HCT116MG_D190212_S1	1	747.0018310546875	1	745.420279	744.413003	0.96863	0.00072204	0.1453	0.00010831	1.1139	0.00083035	745.4203006275783	29.297	0.57353	29.297	29.112	29.685	0					20	10	3	0	0	0	0.82475	1	10649	10649		8.5933	2.8329	1	92860000			32571	1353	20563	20675	31351	31351					0.030572711461331892
TAALPGLPPA	10	Unmodified	_TAALPGLPPA_					0	0	0		PARP14|p.P988L|1|0.47|ENSG00000173193|chr3:122701517-122701517|C/T|missense_variant	PARP14|p.P988L|1|0.47|ENSG00000173193|chr3:122701517-122701517|C/T|missense_variant	PARP14|p.P988L|1|0.47|ENSG00000173193|chr3:122701517-122701517|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	454.2659606933594	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.967	1	29.73	29.23	30.23	-0.23655								0	0	0	0.82636	1	10905	10905		25.399	4.5281	1				32572	9727	20564	20676	31352	31352					0.06046972902845482
TAALPGLPPA	10	Unmodified	_TAALPGLPPA_					0	0	0		PARP14|p.P988L|1|0.47|ENSG00000173193|chr3:122701517-122701517|C/T|missense_variant	PARP14|p.P988L|1|0.47|ENSG00000173193|chr3:122701517-122701517|C/T|missense_variant	PARP14|p.P988L|1|0.47|ENSG00000173193|chr3:122701517-122701517|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	454.266357421875	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.648	1	30.396	29.896	30.896	-0.25235								0	0	0	0.77279	1	11167	11167		32.305	1.6689	1				32573	9727	20564	20676	31353	31353					0.06046972902845482
TAALRPPRPP	10	Unmodified	_TAALRPPRPP_					0	0	0		ENST00000568665.1_1_9:140063308-140066381:-|nuORF;nc|ENSG00000184709|Q2I0M4-2|LRRC26;ENSG00000184709|ENST00000371542|LRRC26	ENST00000568665.1_1_9:140063308-140066381:-|nuORF	ENST00000568665.1_1_9:140063308-140066381:-|nuORF	MSMS	HCT116MG_D190212_S4	4	359.0283203125	3	359.217214	1074.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.597	1	16.431	15.931	16.931	-0.16664								0	0	0	0.93854	1	5444	5444		3.8763	0.88109	1				32574	8874	20565	20677	31354	31354					0.0954824669968275
TAALRTTPSPP	11	Unmodified	_TAALRTTPSPP_					0	0	0		nc|nan|Q8N9H9-2|C1orf127;nc|nan|Q8N9H9|C1orf127;ENSG00000175262|ENST00000377004|C1orf127	nc|nan|Q8N9H9-2|C1orf127	nc|nan|Q8N9H9-2|C1orf127	MSMS	HCT116MG_D190212_S2	2	556.2487182617188	2	556.308938	1110.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.952	1	18.583	18.083	19.083	-0.3695								0	0	0	0.94416	1	6544	6544		9.3831	1.7742	1				32575	5368	20566	20678	31355	31355					0.05244513017692043
TAAMCKWQNE	10	Unmodified	_TAAMCKWQNE_					0	0	0		nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;PARG|p.D904Tfs*4|1|0.16|ENSG00000227345|chr10:49820231-49820231|C/-|frameshift_variant;ENSG00000227345|ENST00000616448|PARG;PARG|p.N277Mfs*5|3|0.4|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	nc|ENSG00000227345|Q86W56-3|PARG	nc|ENSG00000227345|Q86W56-3|PARG	MSMS	HCT116MG_D190212_S1	1	591.7308349609375	2	591.257533	1180.50051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.298	1	20.298	19.798	20.798	0								0	0	0	0.94107	1	7087	7087		6.7232	0	1				32576	6491	20567	20679	31356	31356					-0.08251639036893721
TAAMGKKKI	9	Unmodified	_TAAMGKKKI_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MSMS	HCT116MG_D190212_S4	4	474.2912902832031	2	474.288963	946.563372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.398	1	33.016	32.516	33.516	-0.38223								0	0	0	0.76818	1	12157	12157		7.2892	2.0586	1				32577	3144	20568	20680	31357	31357					0.08795294813444343
TAAMKRREQKF	11	Unmodified	_TAAMKRREQKF_					0	0	0			REV__ENST00000396059.7_1_20:48700783-48729704:-|nuORF	REV__ENST00000396059.7_1_20:48700783-48729704:-|nuORF	MSMS	HCT116MG_D190212_S1	1	683.373046875	2	683.37462	1364.73469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.649	1	28.649	28.149	29.149	0								0	0	0	0.94538	1	10442	10442		8.7454	2.5396	1		+		32578	15350	20569	20681	31358	31358					0.06691000113937662
TAAMKRREQKF	11	Unmodified	_TAAMKRREQKF_					0	0	0			REV__ENST00000396059.7_1_20:48700783-48729704:-|nuORF	REV__ENST00000396059.7_1_20:48700783-48729704:-|nuORF	MSMS	HCT116MG_D190212_S2	2	683.3721313476562	2	683.37462	1364.73469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.01	1	28.693	28.193	29.193	-0.31613								0	0	0	0.94538	1	10607	10607		8.7454	0.58988	1		+		32579	15350	20569	20681	31359	31359					0.06691000113937662
TAAMYMFFFR	10	Unmodified	_TAAMYMFFFR_					0	0	0		nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	MSMS	HCT116MG_D190212_S4	4	642.8013305664062	2	642.798837	1283.58312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.19	1	40.812	40.312	41.312	-0.37732								0	0	0	0.94107	1	15139	15139		6.7232	0.99131	1				32580	4866	20570	20682	31360	31360					-0.047326972381142696
TAANHFNAP	9	Unmodified	_TAANHFNAP_					0	0	0			REV__ENSG00000108175|ENST00000334512|ZMIZ1	REV__ENSG00000108175|ENST00000334512|ZMIZ1	MSMS	HCT116MG_D190212_S4	4	471.7242431640625	2	471.725041	941.435529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.606	1	21.388	20.888	21.888	-0.21832								0	0	0	0.53872	1	7469	7469		26.884	3.7352	1		+		32581	11338	20571	20683	31361	31361					-0.03753129456254101
TAANKLKLFN	10	Unmodified	_TAANKLKLFN_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MSMS	HCT116MG_D190212_S4	4	560.3284912109375	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.83	1	37.447	36.947	37.947	-0.38283								0	0	0	0.95507	1	13859	13859		3.5965	0	1		+		32582	12175	20572	20684	31362	31362					0.09021693777026485
TAAPAAPH	8	Unmodified	_TAAPAAPH_					0	0	0		ENST00000537321.5_1_9:34989748-34990541:+|nuORF	ENST00000537321.5_1_9:34989748-34990541:+|nuORF	ENST00000537321.5_1_9:34989748-34990541:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	368.1929626464844	2	368.192845	734.371138	-0.040864	-1.5046E-05	0.49636	0.00018276	0.4555	0.00016771	368.1929507540367	26.436	0.31251	26.436	26.24	26.553	0					8	5	2	0	0	0	0.84759	1	9561	9561		5.7604	0	1	4484400			32583	8673	20573	20685	31363	31363					-0.006672845423963736
TAAPAELGP	9	Unmodified	_TAAPAELGP_					0	0	0			REV__ENST00000242209.8_1_7:32997103-33014231:+|nuORF	REV__ENST00000242209.8_1_7:32997103-33014231:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	413.7189636230469	2	413.718893	825.423233	0.0019129	7.9139E-07	0.28822	0.00011924	0.29014	0.00012003	413.7189796038513	31.413	0.31331	31.143	30.96	31.273	-0.27028					8	5	2	0	0	0	0.17018	1	11509	11509		44.407	8.3628	1	4482900	+		32584	14564	20574	20686	31364	31364					0.0035383408071538724
TAAPAELGP	9	Unmodified	_TAAPAELGP_					0	0	0			REV__ENST00000242209.8_1_7:32997103-33014231:+|nuORF	REV__ENST00000242209.8_1_7:32997103-33014231:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	413.718893	825.423233	0.0019129	7.9139E-07	0.28822	0.00011924	0.29014	0.00012003	413.7189796038513	31.413	0.31331	31.143	30.96	31.273	-0.27028	-0.0052552	0.00013818	NaN	44.407	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4482900	+		32585	14564	20574	20686							0.0035383408071538724
TAAPAELGP	9	Unmodified	_TAAPAELGP_					0	0	0			REV__ENST00000242209.8_1_7:32997103-33014231:+|nuORF	REV__ENST00000242209.8_1_7:32997103-33014231:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	413.718893	825.423233	0.067666	2.7994E-05	-0.25334	-0.00010481	-0.18568	-7.6818E-05	413.71882753821	31.524	0.26	31.153	30.971	31.231	-0.37026	0.0052552	-0.00030993	NaN	44.407	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5063700	+		32586	14564	20574	20686							0.0035383408071538724
TAAPGAWGSSA	11	Unmodified	_TAAPGAWGSSA_					0	0	0			REV__MAP1S|p.P198Rfs*93|3|0.24|ENSG00000130479|chr19:17725972-17725972|C/-|frameshift_variant	REV__MAP1S|p.P198Rfs*93|3|0.24|ENSG00000130479|chr19:17725972-17725972|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	488.23040771484375	2	488.230156	974.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.333	1	23.085	22.585	23.585	-0.24775								0	0	0	0.93717	1	8164	8164		13.042	0	1		+		32587	17004	20575	20687	31365	31365					-0.04248566521664543
TAAPGPPGPNL	11	Unmodified	_TAAPGPPGPNL_					0	0	0			REV__ENSG00000165556|ENST00000381020|CDX2	REV__ENSG00000165556|ENST00000381020|CDX2	MULTI-MSMS	HCT116MG_D190212_S3	3	496.263916015625	2	496.263999	990.513445	0.34959	0.00017349	0.31268	0.00015517	0.66228	0.00032867	496.2641495743365	30.293	0.46198	30.043	29.65	30.112	-0.24946					13	8	2	0	0	0	0.63759	1	11000	11000		31.268	4.3847	1	8819900	+		32588	13061	20576	20688	31366	31366					0.01780883409139733
TAAPGPPGPNL	11	Unmodified	_TAAPGPPGPNL_					0	0	0			REV__ENSG00000165556|ENST00000381020|CDX2	REV__ENSG00000165556|ENST00000381020|CDX2	MSMS	HCT116MG_D190212_S4	4	496.2635803222656	2	496.263999	990.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.489	1	30.125	29.625	30.625	-0.36416								0	0	0	0.82357	1	11042	11042		29.841	2.2118	1		+		32589	13061	20576	20688	31367	31367					0.01780883409139733
TAAPLLTGYCQ	11	Unmodified	_TAAPLLTGYCQ_					0	0	0			REV__ENST00000490491.5_2_1:156203516-156212950:+|nuORF	REV__ENST00000490491.5_2_1:156203516-156212950:+|nuORF	MSMS	HCT116MG_D190212_S4	4	569.2819213867188	2	569.284074	1136.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.801	1	22.564	22.064	23.064	-0.23758								0	0	0	0.93295	1	7952	7952		15.248	3.6082	1		+		32590	16030	20577	20689	31368	31368					-0.009219379826163276
TAAPNQAP	8	Unmodified	_TAAPNQAP_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	769.3833618164062	1	769.383894	768.376617	0.48725	0.00037488	-0.47919	-0.00036868	0.0080584	6.2E-06	769.3835776323317	20.393	0.20827	20.442	20.311	20.52	0.048107					5	3	2	0	0	0	0.31873	1	7081	7081		57.471	0	1	2364900			32591	2183	20578	20690	31369	31369					-0.01683605750577044
TAAPPPQLNG	10	Unmodified	_TAAPPPQLNG_					0	0	0			REV__nc|ENSG00000285657|P0DV76|FAM90A19	REV__nc|ENSG00000285657|P0DV76|FAM90A19	MSMS	HCT116MG_D190212_S4	4	483.2558288574219	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.456	1	25.177	24.677	25.677	-0.27958								0	0	0	0.88261	1	9022	9022		18.146	1.2041	1		+		32592	17325	20579	20691	31370	31370					0.01412596892100737
TAAPPRGGAP	10	Unmodified	_TAAPPRGGAP_					0	0	0			REV__MEGF8|p.P499Rfs*19|1|0.53|ENSG00000105429|chr19:42337186-42337186|C/-|frameshift_variant;REV__MEGF8|p.D1331Tfs*8|1|0.35|ENSG00000105429|chr19:42353999-42353999|C/-|frameshift_variant	REV__MEGF8|p.D1331Tfs*8|1|0.35|ENSG00000105429|chr19:42353999-42353999|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	447.7430419921875	2	447.743234	893.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.539	1	22.304	21.804	22.804	-0.23497								0	0	0	0.87318	1	7846	7846		19.362	2.249	1		+		32593	17017;11254	20580	20692	31371	31371					0.020917474404768654
TAAPPVKNQEE	11	Unmodified	_TAAPPVKNQEE_					0	0	0		ENST00000576789.1_3_19:7427669-7440673:+|nuORF	ENST00000576789.1_3_19:7427669-7440673:+|nuORF	ENST00000576789.1_3_19:7427669-7440673:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	592.024658203125	2	592.30131	1182.58807	0.71157	0.00042146	-1.0309	-0.00061062	-0.31937	-0.00018916	592.3002356152074	14.828	0.31209	14.828	14.598	14.91	0					6	5	2	0	0	0	0.70073	1	4827	4827		21.537	0	1	1369900			32594	8926	20581	20693	31372	31372					0.004076014298789232
TAAPQALQSY	10	Unmodified	_TAAPQALQSY_					0	0	0		nc|ENSG00000158488|P15812-7|CD1E;nc|ENSG00000158488|P15812-6|CD1E;nc|ENSG00000158488|P15812-3|CD1E;nc|ENSG00000158488|P15812-5|CD1E;CD1E|p.L308Sfs*3|1|0.37|ENSG00000158488|chr1:158356511-158356511|C/-|frameshift_variant;nc|ENSG00000158488|P15812-4|CD1E;CD1E|p.Q332Tfs*5|1|0.16|ENSG00000158488|chr1:158356579-158356580|-/A|frameshift_variant;nc|ENSG00000158488|P15812-2|CD1E;ENSG00000158488|ENST00000368167|CD1E	nc|ENSG00000158488|P15812-7|CD1E	nc|ENSG00000158488|P15812-7|CD1E	MSMS	HCT116MG_D190212_S4	4	525.73974609375	2	525.266739	1048.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.566	1	36.181	35.681	36.681	-0.38518								0	0	0	0.92272	1	13386	13386		10.824	1.4408	1				32595	369	20582	20694	31373	31373					-0.00339437799038933
TAAPRGRQRA	10	Unmodified	_TAAPRGRQRA_					0	0	0		ENST00000532090.2_1_11:65548052-65548166:-|nuORF	ENST00000532090.2_1_11:65548052-65548166:-|nuORF	ENST00000532090.2_1_11:65548052-65548166:-|nuORF	MSMS	HCT116MG_D190212_S2	2	361.87725830078125	3	361.875851	1082.60572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.807	1	18.444	17.944	18.944	-0.36325								0	0	0	0.81962	1	6486	6486		22.775	0.66608	1				32596	8630	20583	20695	31374	31374					0.06772406266054531
TAAPSPLAK	9	Unmodified	_TAAPSPLAK_					0	0	0			REV__MACC1|p.N411Tfs*23|2|0.37|ENSG00000183742|chr7:20159129-20159129|T/-|frameshift_variant	REV__MACC1|p.N411Tfs*23|2|0.37|ENSG00000183742|chr7:20159129-20159129|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	428.2490539550781	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.294	1	25.188	24.688	25.688	-0.10618								0	0	0	0.67173	1	9023	9023		20.454	1.0146	1		+		32597	13777	20584	20696	31375	31375					0.053103998687561216
TAAPSPLAK	9	Unmodified	_TAAPSPLAK_					0	0	0			REV__MACC1|p.N411Tfs*23|2|0.37|ENSG00000183742|chr7:20159129-20159129|T/-|frameshift_variant	REV__MACC1|p.N411Tfs*23|2|0.37|ENSG00000183742|chr7:20159129-20159129|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	428.2489318847656	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.351	1	30.981	30.481	31.481	-0.37026								0	0	0	0.76818	1	11375	11375		7.2892	2.0586	1		+		32598	13777	20584	20696	31376	31376					0.053103998687561216
TAAPSTPTRPP	11	Unmodified	_TAAPSTPTRPP_					0	0	0			REV__ENST00000252542.8_1_19:5587138-5587390:-|nuORF	REV__ENST00000252542.8_1_19:5587138-5587390:-|nuORF	MSMS	HCT116MG_D190212_S3	3	548.498779296875	2	548.293288	1094.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.685	1	29.449	28.949	29.949	-0.23655								0	0	0	0.93552	1	10794	10794		13.906	1.3745	1		+		32599	14587	20585	20697	31377	31377					0.02851939983588636
TAAPTLISEP	10	Unmodified	_TAAPTLISEP_					0	0	0		MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant;ENSG00000101825|ENST00000217939|MXRA5	MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	500.2590637207031	2	500.27149	998.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.175	1	25.069	24.569	25.569	-0.10618								0	0	0	0.88261	1	8976	8976		18.146	2.2992	1				32600	1808	20586	20698	31378	31378					0.02910330486474777
TAAPTPDQSPP	11	Unmodified	_TAAPTPDQSPP_					0	0	0			REV__nc|ENSG00000138162|O95359-6|TACC2	REV__nc|ENSG00000138162|O95359-6|TACC2	MSMS	HCT116MG_D190212_S3	3	541.2493896484375	2	541.261653	1080.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.455	1	27.286	26.786	27.786	-0.16933								0	0	0	0.91433	1	9895	9895		18.146	3.3081	1		+		32601	12214	20587	20699	31379	31379					-0.028280455243020697
TAAPTPDQSPP	11	Unmodified	_TAAPTPDQSPP_					0	0	0			REV__nc|ENSG00000138162|O95359-6|TACC2	REV__nc|ENSG00000138162|O95359-6|TACC2	MSMS	HCT116MG_D190212_S4	4	541.2621459960938	2	541.261653	1080.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.477	1	27.155	26.655	27.655	-0.32157								0	0	0	0.93552	1	9838	9838		13.906	0	1		+		32602	12214	20587	20699	31380	31380					-0.028280455243020697
TAAPVRRSTP	10	Unmodified	_TAAPVRRSTP_					0	0	0			REV__nc|ENSG00000164663|Q70CQ1-2|USP49	REV__nc|ENSG00000164663|Q70CQ1-2|USP49	MSMS	HCT116MG_D190212_S4	4	528.302734375	2	528.301447	1054.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.032	1	27.705	27.205	28.205	-0.32656								0	0	0	0.87113	1	10062	10062		22.736	3.2973	1		+		32603	13015	20588	20700	31381	31381					0.06323065940387096
TAAQEQQVH	9	Unmodified	_TAAQEQQVH_					0	0	0			REV__ENST00000390548.6_1_14:106202899-106203544:-|nuORF	REV__ENST00000390548.6_1_14:106202899-106203544:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	505.755126953125	2	506.246338	1010.47812	-0.30655	-0.00015519	0.5467	0.00027676	0.24015	0.00012157	506.2463731412495	16.782	0.46743	16.616	16.452	16.919	-0.16664					10	8	2	0	0	0	0.25004	1	5616	5616		10.824	4.6181	1	1313500	+		32604	15301	20589	20701	31382	31382					-0.026697791186620634
TAAQNLYEK	9	Unmodified	_TAAQNLYEK_					0	0	0		ENST00000592257.5_2_19:45449319-45452503:+|nuORF;ENSG00000234906|ENST00000252490|APOC2	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	519.2664184570312	2	519.266739	1036.51892	0.19214	9.977E-05	-0.51786	-0.0002689	-0.32572	-0.00016913	519.2664210654211	23.93	0.20849	23.869	23.739	23.947	-0.061449					5	3	2	0	0	0	0.060947	1	8484	8484		69.338	15.505	1	2578700			32605	6523	20590	20702	31383	31383					0.00212562200931643
TAAQNLYEK	9	Unmodified	_TAAQNLYEK_					0	0	0		ENST00000592257.5_2_19:45449319-45452503:+|nuORF;ENSG00000234906|ENST00000252490|APOC2	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	ENST00000592257.5_2_19:45449319-45452503:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	519.267333984375	2	519.266739	1036.51892	0.44555	0.00023136	-0.17066	-8.8618E-05	0.27489	0.00014274	519.2668876685249	24.194	0.15573	23.935	23.833	23.989	-0.25816					4	2	2	0	0	0	0.28785	1	8528	8528		32.037	10.501	1	1840500			32606	6523	20590	20702	31384	31384					0.00212562200931643
TAAQVRGVPAP	11	Unmodified	_TAAQVRGVPAP_					0	0	0			REV__ENST00000570069.5_1_16:1828418-1828808:+|nuORF	REV__ENST00000570069.5_1_16:1828418-1828808:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	533.8038330078125	2	533.803823	1065.59309	0.44469	0.00023738	-0.12388	-6.6126E-05	0.32082	0.00017125	533.8035462142833	20.589	0.21257	20.21	20.076	20.289	-0.37949					6	3	2	0	0	0	0.72139	1	7226	7226		13.906	3.1065	1	14683000	+		32607	16572	20591	20703	31385	31385					0.06291950083118536
TAARPYQPSM	10	Unmodified	_TAARPYQPSM_					0	0	0			REV__ENST00000591665.1_1_19:55671250-55674120:+|nuORF	REV__ENST00000591665.1_1_19:55671250-55674120:+|nuORF	MSMS	HCT116MG_D190212_S4	4	561.2745361328125	2	561.274041	1120.53353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.135	1	25.845	25.345	26.345	-0.29022								0	0	0	0.91638	1	9296	9296		12.241	1.4167	1		+		32608	16693	20592	20704	31386	31386					-0.02191688922562207
TAARSHRSP	9	Unmodified	_TAARSHRSP_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MSMS	HCT116MG_D190212_S4	4	491.7632141113281	2	491.762489	981.510425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.193	1	20.984	20.484	21.484	-0.20959								0	0	0	0.67173	1	7302	7302		20.454	2.3073	1		+		32609	13171	20593	20705	31387	31387					0.018930530749912577
TAASFDKPV	9	Unmodified	_TAASFDKPV_					0	0	0			REV__ENST00000425085.1_1_21:24780104-24780850:-|nuORF	REV__ENST00000425085.1_1_21:24780104-24780850:-|nuORF	MSMS	HCT116MG_D190212_S4	4	468.24468994140625	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.486	1	31.116	30.616	31.616	-0.37026								0	0	0	0.76669	1	11429	11429		12.532	0	1		+		32610	15543	20594	20706	31388	31388					0.006137921435197313
TAASFPGEGRR	11	Unmodified	_TAASFPGEGRR_					0	0	0			REV__ENST00000238647.4_1_14:77494353-77494896:-|nuORF	REV__ENST00000238647.4_1_14:77494353-77494896:-|nuORF	MSMS	HCT116MG_D190212_S4	4	574.7950439453125	2	574.793986	1147.57342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.525	1	24.257	23.757	24.757	-0.26881								0	0	0	0.93456	1	8646	8646		14.405	1.3629	1		+		32611	14560	20595	20707	31389	31389					0.0055357407238716405
TAASFPPLFT	10	Unmodified	_TAASFPPLFT_					0	0	0			REV__ENST00000451943.6_1_11:61067610-61070297:-|nuORF	REV__ENST00000451943.6_1_11:61067610-61070297:-|nuORF	MSMS	HCT116MG_D190212_S1	1	526.27734375	2	526.276575	1050.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.66	1	18.66	18.16	19.16	0								0	0	0	0.92607	1	6427	6427		10.074	0	1		+		32612	15717	20596	20708	31390	31390					0.015349382117165078
TAASGAFVPPP	11	Unmodified	_TAASGAFVPPP_					0	0	0		ENST00000570273.5_1_16:56966069-56976120:+|nuORF;HERPUD1|p.S286Pfs*2|1|0.44|ENSG00000051108|chr16:56940194-56940194|C/-|frameshift_variant;nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1	ENST00000570273.5_1_16:56966069-56976120:+|nuORF	ENST00000570273.5_1_16:56966069-56976120:+|nuORF	MSMS	HCT116MG_D190212_S4	4	507.76519775390625	2	507.766374	1013.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.828	1	20.618	20.118	21.118	-0.20959								0	0	0	0.90571	1	7154	7154		19.257	4.4187	1				32613	8888	20597	20709	31391	31391					0.01197767551900597
TAASKKVRVL	10	Unmodified	_TAASKKVRVL_					0	0	0			REV__nc|ENSG00000095397|Q9P202-3|WHRN	REV__nc|ENSG00000095397|Q9P202-3|WHRN	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.1654663085938	2	536.84549	1071.67643	0.41503	0.00022281	-0.058864	-3.1601E-05	0.35616	0.0001912	536.8454512282343	23.085	0.20813	22.7	22.57	22.778	-0.3852					5	3	2	0	0	0	0.30856	1	8191	8191		3.5965	1.7523	1	14846000	+		32614	11026	20598	20710	31392	31392					0.14345686530987223
TAASLTYP	8	Unmodified	_TAASLTYP_					0	0	0		ENST00000594070.5_1_19:19206777-19217195:+|nuORF;ENSG00000181035|ENST00000318596|SLC25A42	ENST00000594070.5_1_19:19206777-19217195:+|nuORF	ENST00000594070.5_1_19:19206777-19217195:+|nuORF	MSMS	HCT116MG_D190212_S2	2	412.6821594238281	2	412.213443	822.412334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.639	1	24.259	23.759	24.759	-0.38003								0	0	0	0.8837	1	8838	8838		14.582	0	1				32615	5620	20599	20711	31393	31393					-0.005975682935741133
TAASNHRT	8	Unmodified	_TAASNHRT_					0	0	0			REV__ENSG00000166398|ENST00000299505|GARRE1	REV__ENSG00000166398|ENST00000299505|GARRE1	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	2	429.21484	856.415128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.042	1	23.981	23.481	24.481	-0.061449								0	0	0	0.8837	1	8518	8518		8.5933	0	1		+		32616	13103	20600	20712	31394	31394					-0.01882300116051283
TAASPPSPSRP	11	Unmodified	_TAASPPSPSRP_					0	0	0			REV__CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	REV__CACNA1B|p.P2044Lfs*125|1|0.41|ENSG00000148408|chr9:138120261-138120261|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	534.2777709960938	2	534.277638	1066.54072	0.54312	0.00029018	-0.1601	-8.5539E-05	0.38302	0.00020464	534.2774776159566	17.75	0.2084	17.75	17.62	17.828	0					5	3	2	0	0	0	0.73536	1	6086	6086		8.7454	0.83525	1	3322500	+		32617	10076	20601	20713	31395	31395					0.010113669495240174
TAASPSPGAP	10	Unmodified	_TAASPSPGAP_					0	0	0		nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MSMS	HCT116MG_D190212_S3	3	428.2380065917969	2	428.213975	854.413397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.691	1	25.563	25.063	26.063	-0.12795								0	0	0	0.88261	1	9184	9184		18.146	5.1039	1				32618	9583	20602	20714	31396	31396					-0.01963353924668354
TAASQTRLAP	10	Unmodified	_TAASQTRLAP_					0	0	0		ENST00000264560.11_1_19:746795-747209:+|nuORF	ENST00000264560.11_1_19:746795-747209:+|nuORF	ENST00000264560.11_1_19:746795-747209:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	508.280517578125	2	508.28018	1014.54581	0.20444	0.00010391	-0.054712	-2.7809E-05	0.14972	7.6102E-05	508.28025308940005	22.276	0.26056	22.276	22.094	22.354	0.00074577					7	4	2	0	0	0	0.64004	1	7836	7836		25.399	0.40835	1	3796600			32619	6892	20603	20715	31397	31397					0.03911670812124157
TAASQTRLAP	10	Unmodified	_TAASQTRLAP_					0	0	0		ENST00000264560.11_1_19:746795-747209:+|nuORF	ENST00000264560.11_1_19:746795-747209:+|nuORF	ENST00000264560.11_1_19:746795-747209:+|nuORF	MSMS	HCT116MG_D190212_S4	4	508.2799072265625	2	508.28018	1014.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.728	1	22.49	21.99	22.99	-0.23758								0	0	0	0.82636	1	7922	7922		25.399	2.663	1				32620	6892	20603	20715	31398	31398					0.03911670812124157
TAASQTRLAP	10	Unmodified	_TAASQTRLAP_					0	0	0		ENST00000264560.11_1_19:746795-747209:+|nuORF	ENST00000264560.11_1_19:746795-747209:+|nuORF	ENST00000264560.11_1_19:746795-747209:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	508.28018	1014.54581	0.31966	0.00016248	-0.27049	-0.00013748	0.04917	2.4992E-05	508.2798296804433	22.981	0.20791	22.596	22.466	22.674	-0.3852	0.17139	1.7126E-05	NaN	25.399	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5005800			32621	6892	20603	20715							0.03911670812124157
TAASQTRLAP	10	Unmodified	_TAASQTRLAP_					0	0	0		ENST00000264560.11_1_19:746795-747209:+|nuORF	ENST00000264560.11_1_19:746795-747209:+|nuORF	ENST00000264560.11_1_19:746795-747209:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	508.28018	1014.54581	0.091979	4.6751E-05	-0.41878	-0.00021286	-0.3268	-0.00016611	508.27990187506475	22.639	0.20782	22.402	22.237	22.445	-0.23758	-0.022865	-0.00013362	NaN	25.399	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2945500			32622	6892	20603	20715							0.03911670812124157
TAASRPVQ	8	Unmodified	_TAASRPVQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S4	4	415.2282409667969	2	415.229959	828.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.789	1	22.552	22.052	23.052	-0.23758								0	0	0	0.8837	1	7947	7947		8.5933	2.2392	1		+		32623	13681	20604	20716	31399	31399					0.024280585491396778
TAASTCCP	8	Unmodified	_TAASTCCP_					0	0	0		DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant;ENSG00000185163|ENST00000397333|DDX51	DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant	DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	377.1483459472656	2	377.148932	752.28331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.831	1	27.642	27.142	28.142	-0.18847								0	0	0	0.8837	1	10047	10047		9.3474	0	1				32624	658	20605	20717	31400	31400					-0.10273989519669158
TAASTSWAQ	9	Unmodified	_TAASTSWAQ_					0	0	0		ENST00000279804.2_1_16:30913893-30914157:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENST00000427858.4_1_2:38893303-38907288:+|nuORF;ENST00000511526.5_1_3:128616515-128622914:+|nuORF;nc|ENSG00000206562|Q8TCB7-2|METTL6	ENST00000279804.2_1_16:30913893-30914157:+|nuORF	ENST00000279804.2_1_16:30913893-30914157:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	462.1466369628906	2	461.716882	921.41921	0.039712	1.8336E-05	0.43434	0.00020054	0.47405	0.00021888	461.7169372325432	19.49	1.4979	19.303	18.401	19.899	-0.18674					62	28	3	0	0	0	0.59184	1	6302	6302		11.64	11.64	1	9367400			32625	6938	20606	20718	31401	31401					-0.04464255413006413
TAASTTHRYP	10	Unmodified	_TAASTTHRYP_					0	0	0		nc|ENSG00000128567|O00592-2|PODXL;ENSG00000128567|ENST00000378555|PODXL	nc|ENSG00000128567|O00592-2|PODXL	nc|ENSG00000128567|O00592-2|PODXL	MSMS	HCT116MG_D190212_S2	2	552.7749633789062	2	552.775262	1103.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.767	1	28.451	27.951	28.951	-0.31613								0	0	0	0.88261	1	10508	10508		18.146	1.2041	1				32626	2999	20607	20719	31402	31402					-0.011655171932488884
TAASVADDQP	10	Unmodified	_TAASVADDQP_					0	0	0		ENSG00000108733|ENST00000225873|PEX12;PEX12|p.S275Nfs*19|1|0.04|ENSG00000108733|chr17:35576039-35576040|-/TACTGTT|frameshift_variant;PEX12|p.D141Gfs*2|1|0.04|ENSG00000108733|chr17:35577296-35577297|-/C|frameshift_variant	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MSMS	HCT116MG_D190212_S1	1	487.7254943847656	2	487.724904	973.435254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.863	1	15.863	15.363	16.363	0								0	0	0	0.92607	1	5300	5300		10.074	0.72649	1				32627	2178	20608	20720	31403	31403					-0.05252593966758923
TAATDGLAESP	11	Unmodified	_TAATDGLAESP_					0	0	0		ENST00000372827.7_1_1:40254310-40254505:-|nuORF	ENST00000372827.7_1_1:40254310-40254505:-|nuORF	ENST00000372827.7_1_1:40254310-40254505:-|nuORF	MSMS	HCT116MG_D190212_S3	3	516.7459106445312	2	516.745836	1031.47712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.437	1	19.497	18.997	19.997	0.05983								0	0	0	0.80071	1	6665	6665		32.786	7.7947	1				32628	7467	20609	20721	31404	31404					-0.03736038278225351
TAATFMEVI	9	Unmodified	_TAATFMEVI_					0	0	0		ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000169402|ENST00000404077|RSPH10B2	ENSG00000169402|ENST00000404077|RSPH10B2	MSMS	HCT116MG_D190212_S4	4	491.75177001953125	2	491.749336	981.484119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.009	1	26.698	26.198	27.198	-0.3114								0	0	0	0.64498	1	9649	9649		21.747	1.293	1				32629	4236	20610	20722	31405	31405					-0.007363969313587404
TAATITRKRIP	11	Unmodified	_TAATITRKRIP_					0	0	0		ENST00000374213.2_1_1:26646794-26646881:+|nuORF	ENST00000374213.2_1_1:26646794-26646881:+|nuORF	ENST00000374213.2_1_1:26646794-26646881:+|nuORF	MSMS	HCT116MG_D190212_S4	4	614.3815307617188	2	614.380229	1226.7459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.544	1	44.17	43.67	44.67	-0.37326								0	0	0	0.95023	1	16414	16414		6.2058	1.8765	1				32630	7491	20611	20723	31406	31406					0.14160145479741004
TAATNNISATP	11	Unmodified	_TAATNNISATP_					0	0	0		TXNL1|p.C161Lfs*20|1|0.21|ENSG00000091164|chr18:56618014-56618014|C/-|frameshift_variant;ENST00000587807.5_1_18:54270260-54293401:-|nuORF;ENSG00000091164|ENST00000217515|TXNL1	TXNL1|p.C161Lfs*20|1|0.21|ENSG00000091164|chr18:56618014-56618014|C/-|frameshift_variant	TXNL1|p.C161Lfs*20|1|0.21|ENSG00000091164|chr18:56618014-56618014|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	530.2879638671875	2	530.767103	1059.51965	0.15755	8.3623E-05	0.56176	0.00029816	0.71931	0.00038178	530.7671690804424	17.426	0.46829	17.508	17.43	17.898	0.081358					11	8	2	0	0	0	0.3218	1	5899	5899		31.268	8.5321	1	2366100			32631	1557	20612	20724	31407	31407					-0.007726431500032049
TAATTQNP	8	Unmodified	_TAATTQNP_					0	0	0		ENSG00000196233|ENST00000421806|LCOR;nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MSMS	HCT116MG_D190212_S4	4	402.1970520019531	2	402.198325	802.382096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.843	1	23.585	23.085	24.085	-0.25816								0	0	0	0.8837	1	8370	8370		9.3474	0	1				32632	6053	20613	20725	31408	31408					-0.026999269587577146
TAATWQSSAP	10	Unmodified	_TAATWQSSAP_					0	0	0		ENSG00000006210|ENST00000006053|CX3CL1	ENSG00000006210|ENST00000006053|CX3CL1	ENSG00000006210|ENST00000006053|CX3CL1	MSMS	HCT116MG_D190212_S4	4	510.239501953125	2	510.243264	1018.47197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.859	1	31.484	30.984	31.984	-0.37529								0	0	0	0.90023	1	11580	11580		15.847	1.9411	1				32633	824	20614	20726	31409	31409					-0.036522973501973865
TAAVEQLLV	9	Unmodified	_TAAVEQLLV_					0	0	0			REV__PLCG1|p.L37Vfs*37|1|0.22|ENSG00000124181|chr20:41137749-41137750|TT/-|frameshift_variant	REV__PLCG1|p.L37Vfs*37|1|0.22|ENSG00000124181|chr20:41137749-41137750|TT/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	472.2768249511719	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.295	1	24.037	23.537	24.537	-0.25816								0	0	0	0.67173	1	8552	8552		20.454	2.3073	1		+		32634	17425	20615	20727	31410	31410					0.0650293821172454
TAAVGLGPN	9	Unmodified	_TAAVGLGPN_					0	0	0			REV__ENST00000409808.6_1_2:128431994-128432661:-|nuORF	REV__ENST00000409808.6_1_2:128431994-128432661:-|nuORF	MSMS	HCT116MG_D190212_S2	2	400.21759033203125	2	400.21906	798.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.652	1	19.277	18.777	19.777	-0.37503								0	0	0	0.67173	1	6826	6826		20.454	1.0146	1		+		32635	15439	20616	20728	31411	31411					0.016292538005700408
TAAYKRLTVL	10	Unmodified	_TAAYKRLTVL_					0	0	0		AFF4|p.D995Y|1|0.15|ENSG00000072364|chr5:132887543-132887543|C/A|missense_variant	AFF4|p.D995Y|1|0.15|ENSG00000072364|chr5:132887543-132887543|C/A|missense_variant	AFF4|p.D995Y|1|0.15|ENSG00000072364|chr5:132887543-132887543|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	568.3441162109375	2	568.345323	1134.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.339	1	34.953	34.453	35.453	-0.38606								0	0	0	0.94107	1	12939	12939		6.7232	0.51738	1				32636	71	20617	20729	31412	31412					0.11414266811107154
TAAYSNQQQ	9	Unmodified	_TAAYSNQQQ_					0	0	0			REV__ENST00000328462.7_1_X:101034053-101034272:-|nuORF	REV__ENST00000328462.7_1_X:101034053-101034272:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7303771972656	2	505.73052	1009.44649	0.086176	4.3582E-05	-0.30491	-0.0001542	-0.21873	-0.00011062	505.73052210312966	17.806	1.093	17.887	17.482	18.575	0.081356					28	20	2	0	0	0	0.43775	1	5975	5975		20.454	2.3073	1	2662300	+		32637	14914	20618	20730	31413	31413					-0.05785771872615442
TAAYSNQQQ	9	Unmodified	_TAAYSNQQQ_					0	0	0			REV__ENST00000328462.7_1_X:101034053-101034272:-|nuORF	REV__ENST00000328462.7_1_X:101034053-101034272:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	506.2397766113281	2	505.73052	1009.44649	0.086176	4.3582E-05	-0.30491	-0.0001542	-0.21873	-0.00011062	505.73052210312966	17.806	1.093	17.887	17.482	18.575	0.081356					28	20	2	0	0	0	0.19551	1	5935	5935		34.102	7.2188	1	2662300	+		32638	14914	20618	20730	31414	31414					-0.05785771872615442
TACGGRGK	8	Unmodified	_TACGGRGK_					0	0	0		nc|ENSG00000173338|Q9Y2U2-3|KCNK7	nc|ENSG00000173338|Q9Y2U2-3|KCNK7	nc|ENSG00000173338|Q9Y2U2-3|KCNK7	MULTI-SECPEP	HCT116MG_D190212_S1	1	749.3753662109375	1	749.372283	748.365007	0.92992	0.00069686	0.28458	0.00021326	1.2145	0.00091012	749.3741315144231	35.67	0.20707	35.67	35.578	35.785	0					5	3	2	0	0	0	0.33409	1	13307	13307		0.69038	0.088878	1	10769000			32639	9553	20619	20731	31415	31415					-0.019241260455487463
TADDKKLQF	9	Unmodified	_TADDKKLQF_					0	0	0		ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3;ENST00000510787.5_1_5:72794492-72798477:+|nuORF	ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MSMS	HCT116MG_D190212_S1	1	533.2828979492188	2	533.282389	1064.55022	0.46382	0.00024735	0.17808	9.4965E-05	0.64189	0.00034231	533.2824045749458	31.476	0.36424	31.476	31.284	31.648	0					12	6	3	0	0	0	0.037825	1	11603	11603		80.676	38.364	1	7271200			32640	3921	20620	20732	31416	31416					0.02053135235018999
TADDKKLQF	9	Unmodified	_TADDKKLQF_					0	0	0		ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3;ENST00000510787.5_1_5:72794492-72798477:+|nuORF	ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MSMS	HCT116MG_D190212_S2	2	533.2827758789062	2	533.282389	1064.55022	0.662	0.00035303	0.011526	6.1465E-06	0.67352	0.00035918	533.2823482241088	31.733	0.25875	31.484	31.354	31.613	-0.24883					9	4	3	0	0	0	0.32155	1	11739	11739		28.495	4.4739	1	49723000			32641	3921	20620	20732	31417	31417					0.02053135235018999
TADDKKLQF	9	Unmodified	_TADDKKLQF_					0	0	0		ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3;ENST00000510787.5_1_5:72794492-72798477:+|nuORF	ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	533.282389	1064.55022	0.662	0.00035303	0.011526	6.1465E-06	0.67352	0.00035918	533.2823482241088	31.733	0.25875	31.484	31.354	31.613	-0.24883	0.0041037	-1.644E-05	NaN	80.676	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49723000			32642	3921	20620	20732							0.02053135235018999
TADDPSLSL	9	Unmodified	_TADDPSLSL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S1	1	918.444091796875	1	918.441468	917.434192	0.84207	0.00077339	0.48654	0.00044686	1.3286	0.0012202	918.4417554530123	43.325	0.20787	43.325	43.212	43.42	0					5	3	2	0	0	0	0.0054498	1	16389	16389		133.7	55.553	1	9680500			32643	6563	20621	20733	31418	31418					-0.027828083356666866
TADDPSLSL	9	Unmodified	_TADDPSLSL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S2	2	918.4417724609375	1	918.441468	917.434192	0.458	0.00042064	0.015307	1.4059E-05	0.4733	0.0004347	918.441317779743	43.315	0.61858	43.242	43.045	43.664	-0.073372					18	11	2	0	0	0	0.0060607	1	16417	16417		128.37	60.285	1	49951000			32644	6563	20621	20733	31419	31419					-0.027828083356666866
TADDPSLSL	9	Unmodified	_TADDPSLSL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S3	3	918.4404907226562	1	918.441468	917.434192	0.81983	0.00075297	-0.023886	-2.1938E-05	0.79595	0.00073103	918.4413495766398	43.572	0.52115	43.266	43.084	43.605	-0.30616					22	9	3	0	0	0	0.007119	1	16256	16256		120.45	49.317	1	32377000			32645	6563	20621	20733	31420	31420					-0.027828083356666866
TADDPSLSL	9	Unmodified	_TADDPSLSL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S4	4	918.4422607421875	1	918.441468	917.434192	0.7151	0.00065677	0.0062805	5.7683E-06	0.72138	0.00066254	918.4413152877011	43.712	0.50867	43.338	43.114	43.623	-0.37433					18	9	3	0	0	0	0.007119	1	16066	16066		120.45	46.028	1	13055000			32646	6563	20621	20733	31421	31421					-0.027828083356666866
TADDPSLSLI	10	Unmodified	_TADDPSLSLI_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S2	2	1031.525390625	1	1031.52553	1030.51826	0.44904	0.0004632	0.19863	0.00020489	0.64767	0.00066809	1031.5256728806708	52.768	0.46429	52.581	52.347	52.811	-0.18725					18	8	3	0	0	0	0.060393	1	20260	20260		81.89	29.622	1	48120000			32647	6563	20622	20734	31422	31422					0.004217227612343777
TADDPSLSLI	10	Unmodified	_TADDPSLSLI_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S3	3	1031.526123046875	1	1031.52553	1030.51826	0.71853	0.00074118	0.095285	9.8289E-05	0.81381	0.00083947	1031.525425428844	52.998	0.47057	52.695	52.512	52.983	-0.30305					17	8	3	0	0	0	0.042873	1	20033	20033		92.491	31.134	1	16877000			32648	6563	20622	20734	31423	31423					0.004217227612343777
TADDPSLSLI	10	Unmodified	_TADDPSLSLI_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S4	4	1031.5264892578125	1	1031.52553	1030.51826	0.63852	0.00065865	0.57444	0.00059255	1.213	0.0012512	1031.525689455846	53.025	0.36382	52.69	52.514	52.878	-0.33538					13	6	3	0	0	0	0.060393	1	19795	19795		81.89	29.622	1	4800000			32649	6563	20622	20734	31424	31424					0.004217227612343777
TADDPSLSLI	10	Unmodified	_TADDPSLSLI_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MSMS	HCT116MG_D190212_S4	4	516.2662963867188	2	516.266404	1030.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.117	1	52.782	52.282	53.282	-0.33473								0	0	0	0.69311	1	19822	19822		37.974	3.8716	1				32650	6563	20622	20734	31425	31425					0.004217227612343777
TADDYGDY	8	Unmodified	_TADDYGDY_					0	0	0		ENST00000371951.5_1_X:114082749-114141440:+|nuORF;nc|ENSG00000147246|P28335-2|HTR2C	ENST00000371951.5_1_X:114082749-114141440:+|nuORF	ENST00000371951.5_1_X:114082749-114141440:+|nuORF	MSMS	HCT116MG_D190212_S3	3	460.1712341308594	2	460.16943	918.324307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.089	1	25.962	25.462	26.462	-0.12795								0	0	0	0.8837	1	9344	9344		14.582	4.3983	1				32651	7447	20623	20735	31426	31426					-0.1381223367485518
TADGAHFEL	9	Unmodified	_TADGAHFEL_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;ENST00000546538.1_1_19:16643407-16652813:-|nuORF	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	480.7251281738281	2	480.724707	959.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.741	1	42.741	42.241	43.241	0								0	0	0	0.42657	1	16129	16129		32.305	8.2849	1				32652	434	20624	20736	31427	31427					-0.0464796889596073
TADGAHFEL	9	Unmodified	_TADGAHFEL_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;ENST00000546538.1_1_19:16643407-16652813:-|nuORF	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	480.7244873046875	2	480.724707	959.43486	0.50579	0.00024314	-0.29767	-0.0001431	0.20811	0.00010005	480.7243045806943	42.629	0.26007	42.559	42.429	42.689	-0.069984					7	4	2	0	0	0	0.084109	1	16167	16167		61.357	29.052	1	19422000			32653	434	20624	20736	31428	31428					-0.0464796889596073
TADGAHFEL	9	Unmodified	_TADGAHFEL_					0	0	0		CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant;ENSG00000085872|ENST00000546361|CHERP;CHERP|p.P585Lfs*70|1|0.22|ENSG00000085872|chr19:16523278-16523278|G/-|frameshift_variant;ENST00000546538.1_1_19:16643407-16652813:-|nuORF	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	CHERP|p.Q608Sfs*47|1|0.34|ENSG00000085872|chr19:16523210-16523210|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	480.7247009277344	2	480.724707	959.43486	0.29225	0.00014049	0.30951	0.00014879	0.60176	0.00028928	480.7247439425706	42.89	0.25085	42.586	42.456	42.706	-0.30472					6	4	2	0	0	0	0.097615	1	16021	16021		58.679	29.597	1	5179600			32654	434	20624	20736	31429	31429					-0.0464796889596073
TADGAISM	8	Unmodified	_TADGAISM_					0	0	0			REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	REV__nc|ENSG00000109111|Q7KZ85-3|SUPT6H	MULTI-MSMS	HCT116MG_D190212_S2	2	765.345703125	1	765.344731	764.337454	1.2873	0.00098519	0.66793	0.00051119	1.9552	0.0014964	765.3447220497083	42.734	0.25957	42.664	42.533	42.793	-0.069984					7	4	2	0	0	0	0.60268	1	16188	16188		32.117	5.7757	1	31492000	+		32655	11364	20625	20737	31430	31430					-0.054140740964498946
TADGKTYYY	9	Unmodified	_TADGKTYYY_					0	0	0		ENST00000507175.5_1_5:145826912-145859658:+|nuORF;TCERG1|p.K627Nfs*37|1|0.1|ENSG00000113649|chr5:146480083-146480083|A/-|frameshift_variant;TCERG1|p.M735Nfs*8|1|0.26|ENSG00000113649|chr5:146493003-146493004|-/A|frameshift_variant;TCERG1|p.K957Rfs*17|1|0.28|ENSG00000113649|chr5:146507160-146507160|A/-|frameshift_variant;TCERG1|p.I983Nfs*3|1|0.36|ENSG00000113649|chr5:146507901-146507902|-/A|frameshift_variant;TCERG1|p.I983Sfs*41|1|0.35|ENSG00000113649|chr5:146507902-146507902|A/-|frameshift_variant;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000513298.5_1_5:145838810-145849312:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF;ENST00000513298.5_1_5:145838810-145849312:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	540.7593383789062	2	541.245472	1080.47639	0.66445	0.00035963	-0.28682	-0.00015524	0.37763	0.00020439	541.245467900544	29.462	0.20815	29.462	29.321	29.529	0					5	3	2	0	0	0	0.2493	1	10770	10770		17.113	7.7298	1	4993800			32656	2401;8510	20626	20738	31431	31431					-0.06062832927295858
TADGKTYYY	9	Unmodified	_TADGKTYYY_					0	0	0		ENST00000507175.5_1_5:145826912-145859658:+|nuORF;TCERG1|p.K627Nfs*37|1|0.1|ENSG00000113649|chr5:146480083-146480083|A/-|frameshift_variant;TCERG1|p.M735Nfs*8|1|0.26|ENSG00000113649|chr5:146493003-146493004|-/A|frameshift_variant;TCERG1|p.K957Rfs*17|1|0.28|ENSG00000113649|chr5:146507160-146507160|A/-|frameshift_variant;TCERG1|p.I983Nfs*3|1|0.36|ENSG00000113649|chr5:146507901-146507902|-/A|frameshift_variant;TCERG1|p.I983Sfs*41|1|0.35|ENSG00000113649|chr5:146507902-146507902|A/-|frameshift_variant;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000513298.5_1_5:145838810-145849312:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF;ENST00000513298.5_1_5:145838810-145849312:+|nuORF	ENST00000507175.5_1_5:145826912-145859658:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	540.7593383789062	2	541.245472	1080.47639	0.46676	0.00025263	0.17391	9.4126E-05	0.64067	0.00034676	541.2455383884353	29.839	0.25828	29.538	29.444	29.702	-0.30095					6	4	2	0	0	0	0.24524	1	10944	10944		14.405	1.3629	1	11323000			32657	2401;8510	20626	20738	31432	31432					-0.06062832927295858
TADGYPHKTGE	11	Unmodified	_TADGYPHKTGE_					0	0	0			REV__ENST00000375156.3_1_6:32097471-32097579:-|nuORF	REV__ENST00000375156.3_1_6:32097471-32097579:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	587.8150024414062	2	588.27001	1174.52547	0.61377	0.00036106	0.59129	0.00034784	1.2051	0.0007089	588.270270973209	30.085	0.90714	29.836	29.227	30.134	-0.24946					24	16	2	0	0	0	0.69749	1	10928	10928		22.736	7.898	1	6337900	+		32658	15211	20627	20739	31433	31433					-0.054815446383372546
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2774658203125	2	530.277106	1058.53966	0.37466	0.00019867	0.53712	0.00028482	0.91178	0.0004835	530.2772981028752	46.933	0.25902	46.933	46.803	47.062	0					9	4	3	0	0	0	0.15273	1	17865	17865		47.749	5.6541	1	21933000			32659	5738	20628	20740	31434	31434					0.01273152580643
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2774658203125	2	530.277106	1058.53966	0.80369	0.00042618	0.35839	0.00019005	1.1621	0.00061622	530.2772131838088	46.968	0.51509	46.846	46.615	47.13	-0.12175					19	9	3	0	0	0	0.049545	1	17887	17887		74.929	28.008	1	171480000			32660	5738	20628	20740	31435	31435					0.01273152580643
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2771606445312	2	530.277106	1058.53966	0.40092	0.0002126	-0.037174	-1.9713E-05	0.36375	0.00019289	530.2770800460784	47.247	0.43302	46.931	46.697	47.13	-0.31525					17	8	3	0	0	0	0.01389	1	17726	17726		103.75	48.975	1	44572000			32661	5738	20628	20740	31436	31436					0.01273152580643
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2775268554688	2	530.277106	1058.53966	0.60593	0.00032131	-0.19224	-0.00010194	0.41369	0.00021937	530.2768804530609	47.292	0.27174	46.921	46.744	47.016	-0.37038					9	5	2	0	0	0	0.031089	1	17498	17498		85.272	30.498	1	21300000			32662	5738	20628	20740	31437	31437					0.01273152580643
TADHNLLLYE	10	Unmodified	_TADHNLLLYE_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	HCT116MG_D190212_S2	2	594.83056640625	2	594.798403	1187.58225	0.80184	0.00047694	0.88084	0.00052392	1.6827	0.0010009	594.7991130329783	45.01	0.20939	44.917	44.787	44.996	-0.092472					5	3	2	0	0	0	0.22419	1	17110	17110		47.594	15.289	1	13934000			32663	5738	20629	20741	31438	31438					-0.004034970817883732
TADISDVWL	9	Unmodified	_TADISDVWL_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	HCT116MG_D190212_S3	3	1019.5047607421875	1	1019.5044	1018.49713	0.78503	0.00080034	-0.65123	-0.00066393	0.1338	0.00013641	1019.5041317353633	56.93	0.31296	56.651	56.364	56.677	-0.27913					6	5	2	0	0	0	0.031005	1	21631	21631		85.357	7.3724	1	3218400			32664	6260	20630	20742	31439	31439					-0.011382425476313074
TADISDVWL	9	Unmodified	_TADISDVWL_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	HCT116MG_D190212_S4	4	1019.50439453125	1	1019.5044	1018.49713	0.78192	0.00079717	0.17593	0.00017936	0.95785	0.00097654	1019.5041259725416	56.914	0.15605	56.613	56.519	56.675	-0.30039					4	2	2	0	0	0	0.043314	1	21367	21367		77.984	35.89	1	1837300			32665	6260	20630	20742	31440	31440					-0.011382425476313074
TADLAERRCIR	11	Unmodified	_TADLAERRCIR_					0	0	0		SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	435.2353515625	3	435.234827	1302.68265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.341	1	11.059	10.559	11.559	-0.28186								0	0	0	0.9619	1	3648	3648		0.094841	0	1				32666	18178	20631	20743	31441	31441					0.04341836700200474
TADLAERRCIR	11	Unmodified	_TADLAERRCIR_					0	0	0		SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	435.2353820800781	3	435.234827	1302.68265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.549	1	12.252	11.752	12.752	-0.29721								0	0	0	0.9619	1	4105	4105		0.094841	0	1				32667	18178	20631	20743	31442	31442					0.04341836700200474
TADLAERRCIR	11	Unmodified	_TADLAERRCIR_					0	0	0		SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	435.2354736328125	3	435.234827	1302.68265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.058	1	12.753	12.253	13.253	-0.30453								0	0	0	0.9619	1	4273	4273		0.094841	0	1				32668	18178	20631	20743	31443	31443					0.04341836700200474
TADLAERRCIR	11	Unmodified	_TADLAERRCIR_					0	0	0		SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	435.2355651855469	3	435.234827	1302.68265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.604	1	13.299	12.799	13.799	-0.30453								0	0	0	0.9619	1	4450	4450		0.094841	0	1				32669	18178	20631	20743	31444	31444					0.04341836700200474
TADLAERRCIR	11	Unmodified	_TADLAERRCIR_					0	0	0		SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	435.2351989746094	3	435.234827	1302.68265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1225	1	7.1364	6.6364	7.6364	0.013901								0	0	0	0.9619	1	2149	2149		0.094841	0	1				32670	18178	20631	20743	31445	31445					0.04341836700200474
TADLAERRCIR	11	Unmodified	_TADLAERRCIR_					0	0	0		SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	435.2352294921875	3	435.234827	1302.68265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6987	1	8.7193	8.2193	9.2193	0.020599								0	0	0	0.9619	1	2624	2624		0.094841	0	1				32671	18178	20631	20743	31446	31446					0.04341836700200474
TADLAERRCIR	11	Unmodified	_TADLAERRCIR_					0	0	0		SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	SMTN|p.R29C|1|0.4|ENSG00000183963|chr22:31087998-31087998|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	435.23577880859375	3	435.234827	1302.68265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0518	1	6.8016	6.3016	7.3016	-0.25015								0	0	0	0.9619	1	2159	2159		0.094841	0	1				32672	18178	20631	20743	31447	31447					0.04341836700200474
TADPGAGNPQP	11	Unmodified	_TADPGAGNPQP_					0	0	0		RANBP10|p.G25Afs*11|1|0.43|ENSG00000141084|chr16:67806463-67806463|C/-|frameshift_variant;ENST00000602525.5_1_16:67765330-67840439:-|nuORF;nc|ENSG00000141084|Q6VN20-3|RANBP10;ENSG00000141084|ENST00000317506|RANBP10	RANBP10|p.G25Afs*11|1|0.43|ENSG00000141084|chr16:67806463-67806463|C/-|frameshift_variant	RANBP10|p.G25Afs*11|1|0.43|ENSG00000141084|chr16:67806463-67806463|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	512.7383422851562	2	512.738345	1023.46214	-0.38841	-0.00019915	0.40778	0.00020909	0.01937	9.932E-06	512.7386225522058	16.373	1.5668	16.21	15.407	16.974	-0.16364					52	30	3	0	0	0	0.70073	1	5534	5534		21.537	0	1	2606700			32673	3703	20632	20744	31448	31448					-0.048654853555717636
TADPLDYRL	9	Unmodified	_TADPLDYRL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-SECPEP	HCT116MG_D190212_S3	3	531.8173217773438	2	532.274564	1062.53457	0.48284	0.000257	-0.52161	-0.00027764	-0.038774	-2.0638E-05	532.274198916859	47.038	0.15644	46.724	46.646	46.802	-0.31405					4	2	2	0	0	0	0.20204	1	17672	17672		34.932	5.8505	1	2492900			32674	2256	20633	20745	31449	31449					0.0058084871798200766
TADPTHPHH	9	Unmodified	_TADPTHPHH_					0	0	0		sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1;sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	506.73443603515625	2	506.733397	1011.45224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.553	1	14.233	13.733	14.733	-0.31952								0	0	0	0.76902	1	4772	4772		4.3292	0.38484	1				32675	18214	20634	20746	31450	31450					-0.0530262857029129
TADRATEPP	9	Unmodified	_TADRATEPP_					0	0	0			REV__PER3|p.H914Dfs*28|1|0.08|ENSG00000049246|chr1:7827691-7827692|-/TGATATC|frameshift_variant	REV__PER3|p.H914Dfs*28|1|0.08|ENSG00000049246|chr1:7827691-7827692|-/TGATATC|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	479.2358093261719	2	479.235439	956.456324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.54	1	25.433	24.933	25.933	-0.10618								0	0	0	0.62451	1	9123	9123		22.736	4.5899	1		+		32676	10614	20635	20747	31451	31451					-0.02364583867233705
TADRQYVEG	9	Unmodified	_TADRQYVEG_					0	0	0		ENST00000519230.1_1_5:157413535-157414072:-|nuORF	ENST00000519230.1_1_5:157413535-157414072:-|nuORF	ENST00000519230.1_1_5:157413535-157414072:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	519.746826171875	2	519.74617	1037.47779	0.32218	0.00016745	0.40844	0.00021228	0.73062	0.00037974	519.7464605617263	20.62	0.7792	20.418	20.144	20.923	-0.20133					18	14	2	0	0	0	0.61923	1	7104	7104		10.074	0.6908	1	1817000			32677	8546	20636	20748	31452	31452					-0.039451988385280856
TADSFYMWH	9	Unmodified	_TADSFYMWH_					0	0	0			REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B	REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B	MSMS	HCT116MG_D190212_S3	3	579.2412109375	2	579.239667	1156.46478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.119	1	25.012	24.512	25.512	-0.10618								0	0	0	0.768	1	8953	8953		7.9102	1.187	1		+		32678	11433	20637	20749	31453	31453					-0.10719353222270911
TAEDPSKSYV	10	Unmodified	_TAEDPSKSYV_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	548.76171875	2	548.761486	1095.50842	0.64576	0.00035437	-0.11027	-6.0513E-05	0.53549	0.00029385	548.7612292296592	26.192	0.57044	25.83	25.557	26.128	-0.36164					15	6	3	0	0	0	0.030673	1	9455	9455		101.54	57.771	1	29954000			32679	3009	20638	20750	31454	31454					-0.035514652441406724
TAEDPSKSYV	10	Unmodified	_TAEDPSKSYV_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	548.7621459960938	2	548.761486	1095.50842	0.55479	0.00030445	0.058565	3.2138E-05	0.61336	0.00033659	548.7614917319855	26.009	0.36518	25.882	25.65	26.016	-0.12795					10	6	2	0	0	0	0.084931	1	9321	9321		77.049	36.809	1	13580000			32680	3009	20638	20750	31455	31455					-0.035514652441406724
TAEDPSKSYV	10	Unmodified	_TAEDPSKSYV_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MSMS	HCT116MG_D190212_S4	4	548.7623901367188	2	548.761486	1095.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.294	1	25.993	25.493	26.493	-0.30087								0	0	0	0.78522	1	9360	9360		30.703	3.8198	1				32681	3009	20638	20750	31456	31456					-0.035514652441406724
TAEDPSKSYV	10	Unmodified	_TAEDPSKSYV_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	548.761486	1095.50842	0.55413	0.00030409	0.14255	7.8226E-05	0.69668	0.00038231	548.7616723919226	25.776	0.31376	25.776	25.614	25.927	0	-0.053155	0.00013088	NaN	101.54	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3592700			32682	3009	20638	20750							-0.035514652441406724
TAEEDYVRINH	11	Unmodified	_TAEEDYVRINH_					0	0	0			REV__nc|ENSG00000141298|Q76I76-4|SSH2	REV__nc|ENSG00000141298|Q76I76-4|SSH2	MULTI-MSMS	HCT116MG_D190212_S1	1	449.54925537109375	3	449.549357	1345.62624	0.12405	5.5765E-05	0.08042	3.6153E-05	0.20447	9.1918E-05	449.54926055966655	18.167	0.20874	18.167	18.037	18.246	0					7	3	3	0	0	0	0.70073	1	6236	6236		12.856	0	1	7986000	+		32683	12328	20639	20751	31457	31457					-0.03274512655457329
TAEEDYVRINH	11	Unmodified	_TAEEDYVRINH_					0	0	0			REV__nc|ENSG00000141298|Q76I76-4|SSH2	REV__nc|ENSG00000141298|Q76I76-4|SSH2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	449.549357	1345.62624	-0.20272	-9.1132E-05	0.062997	2.832E-05	-0.13972	-6.2812E-05	449.54942086710395	18.802	0.20775	18.439	18.269	18.477	-0.36325	0.13604	-1.0213E-05	NaN	12.856	9	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21679000	+		32684	12328	20639	20751							-0.03274512655457329
TAEGGQGQAQ	10	Unmodified	_TAEGGQGQAQ_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MSMS	HCT116MG_D190212_S3	3	473.9248046875	2	473.71487	945.415188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.393	1	29.171	28.671	29.671	-0.22195								0	0	0	0.83884	1	10677	10677		23.79	4.5328	1				32685	5348	20640	20752	31458	31458					-0.0597034490670012
TAEGYREK	8	Unmodified	_TAEGYREK_					0	0	0		ENST00000556578.1_1_14:73739525-73739606:-|nuORF	ENST00000556578.1_1_14:73739525-73739606:-|nuORF	ENST00000556578.1_1_14:73739525-73739606:-|nuORF	MSMS	HCT116MG_D190212_S3	3	476.75830078125	2	477.237981	952.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.628	1	20.663	20.163	21.163	0.034473								0	0	0	0.8837	1	7145	7145		12.532	0	1				32686	8790	20641	20753	31459	31459					-0.016722800046181874
TAELDLRQ	8	Unmodified	_TAELDLRQ_					0	0	0			REV__ENSG00000034971|ENST00000037502|MYOC	REV__ENSG00000034971|ENST00000037502|MYOC	MULTI-MSMS	HCT116MG_D190212_S4	4	473.25982666015625	2	473.253631	944.49271	0.40975	0.00019392	-1.0809	-0.00051153	-0.67113	-0.00031761	473.25285209591004	27.397	0.36346	27.085	26.845	27.209	-0.31248					10	6	3	0	0	0	0.82475	1	9777	9777		8.5933	1.304	1	4802300	+		32687	10576	20642	20754	31460	31460					0.01824293029483215
TAEPAQPSS	9	Unmodified	_TAEPAQPSS_					0	0	0		CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant;CUX1|p.I1081Sfs*39|2|0.46|ENSG00000257923|chr7:102227471-102227471|C/-|frameshift_variant;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	CUX1|p.E933Sfs*59|1|0.14|ENSG00000257923|chr7:102202089-102202089|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	444.20928955078125	2	444.208889	886.403226	0.014961	6.6459E-06	-1.1657	-0.00051779	-1.1507	-0.00051115	444.20796440325415	18.011	0.67668	18.088	17.737	18.413	0.076334					16	12	2	0	0	0	0.30117	1	6157	6157		30.637	6.8468	1	3861200			32688	619	20643	20755	31461	31461					-0.044519616498973846
TAEPHAEG	8	Unmodified	_TAEPHAEG_					0	0	0			REV__ENSG00000132938|ENST00000612955|MTUS2	REV__ENSG00000132938|ENST00000612955|MTUS2	MULTI-MSMS	HCT116MG_D190212_S1	1	811.3587036132812	1	811.358073	810.350796	0.83021	0.00067359	-0.056623	-4.5942E-05	0.77358	0.00062765	811.3581500565222	18.428	0.20828	18.428	18.298	18.506	0					5	3	2	0	0	0	0.60268	1	6342	6342		32.117	0	1	2140500	+		32689	12011	20644	20756	31462	31462					-0.06196499992847748
TAFPRTQRA	9	Unmodified	_TAFPRTQRA_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant;FAT4|p.A2521Sfs*37|1|0.11|ENSG00000196159|chr4:125448571-125448572|-/G|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	524.2885131835938	2	524.28834	1046.56213	0.34903	0.00018299	0.031662	1.66E-05	0.38069	0.00019959	524.288214833402	20.429	0.21267	20.05	19.917	20.13	-0.37949					8	3	3	0	0	0	0.53593	1	7166	7166		14.838	14.838	1	13342000			32690	6046	20645	20757	31463	31463					0.04070796768905893
TAFTGNKL	8	Unmodified	_TAFTGNKL_					0	0	0			REV__ENST00000432829.6_1_9:464237-464312:+|nuORF	REV__ENST00000432829.6_1_9:464237-464312:+|nuORF	MSMS	HCT116MG_D190212_S4	4	426.23358154296875	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.334	1	58.045	57.545	58.545	-0.28879								0	0	0	0.8837	1	21922	21922		5.7604	0	1		+		32691	15593	20646	20758	31464	31464					0.023658268346594014
TAGIASSIVEN	11	Unmodified	_TAGIASSIVEN_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MSMS	HCT116MG_D190212_S4	4	531.2772216796875	2	531.277303	1060.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.956	1	21.733	21.233	22.233	-0.22312								0	0	0	0.93295	1	7610	7610		15.248	1.3424	1				32692	1690	20647	20759	31465	31465					0.01220527509826752
TAGLRLYRR	9	Unmodified	_TAGLRLYRR_					0	0	0			REV__ENSG00000113272|ENST00000231198|THG1L	REV__ENSG00000113272|ENST00000231198|THG1L	MSMS	HCT116MG_D190212_S4	4	553.33154296875	2	553.333082	1104.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.52	1	39.14	38.64	39.64	-0.38055								0	0	0	0.76603	1	14523	14523		14.838	6.0929	1		+		32693	11479	20648	20760	31466	31466					0.10347051448275124
TAGMVRHIYRD	11	Unmodified	_TAGMVRHIYRD_					0	0	0		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MSMS	HCT116MG_D190212_S3	3	659.8363647460938	2	659.837871	1317.66119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.161	1	32.876	32.376	33.376	-0.28511								0	0	0	0.92983	1	12168	12168		16.149	0.90062	1				32694	2721	20649	20761	31467	31467					0.015064516714801357
TAGRRLPP	8	Unmodified	_TAGRRLPP_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MSMS	HCT116MG_D190212_S1	1	434.2610778808594	2	434.261594	866.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.135	1	15.135	14.635	15.635	0								0	0	0	0.8837	1	5007	5007		5.7604	0	1		+		32695	10722	20650	20762	31468	31468					0.0700404405702102
TAGSGFLY	8	Unmodified	_TAGSGFLY_					0	0	0		ENST00000587651.1_1_17:58296950-58303472:-|nuORF;USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	815.3935546875	1	815.393396	814.386119	1.3157	0.0010728	-0.36776	-0.00029987	0.9479	0.00077291	815.392989727868	46.866	0.30796	46.755	46.574	46.882	-0.11121					9	5	2	0	0	0	0.03907	1	17866	17866		136.08	69.045	1	43127000			32696	5159	20651	20763	31469	31469					-0.02849837465055316
TAGSGFLY	8	Unmodified	_TAGSGFLY_					0	0	0		ENST00000587651.1_1_17:58296950-58303472:-|nuORF;USP32|p.G1453Afs*14|1|0.37|ENSG00000170832|chr17:60181514-60181514|C/-|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	815.3945922851562	1	815.393396	814.386119	0.97757	0.00079711	-0.12057	-9.831E-05	0.857	0.0006988	815.3934375368857	47.09	0.31258	46.776	46.646	46.959	-0.31405					7	5	2	0	0	0	0.13911	1	17706	17706		86.121	45.673	1	4099800			32697	5159	20651	20763	31470	31470					-0.02849837465055316
TAGSIPRAS	9	Unmodified	_TAGSIPRAS_					0	0	0			REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	430.23529052734375	2	430.235242	858.45593	0.07361	3.167E-05	0.09873	4.2477E-05	0.17234	7.4147E-05	430.23533635782354	23.432	0.20813	23.185	23.063	23.272	-0.24775					5	3	2	0	0	0	0.47809	1	8213	8213		18.146	4.2403	1	2051300	+		32698	15226	20652	20764	31471	31471					0.02104041203563156
TAGSIPRAS	9	Unmodified	_TAGSIPRAS_					0	0	0			REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	430.235242	858.45593	0.096515	4.1524E-05	0.23398	0.00010067	0.33049	0.00014219	430.2353782559039	23.201	0.15643	23.161	23.031	23.187	-0.03968	-0.011721	5.2886E-06	NaN	18.146	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3135900	+		32699	15226	20652	20764							0.02104041203563156
TAGSIPRAS	9	Unmodified	_TAGSIPRAS_					0	0	0			REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	430.235242	858.45593	0.07361	3.167E-05	0.09873	4.2477E-05	0.17234	7.4147E-05	430.23533635782354	23.432	0.20813	23.185	23.063	23.272	-0.24775	0.011721	-0.00011109	NaN	18.146	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2051300	+		32700	15226	20652	20764							0.02104041203563156
TAGVGPKRPG	10	Unmodified	_TAGVGPKRPG_					0	0	0			REV__ENST00000407418.7_1_22:39261880-39262189:-|nuORF	REV__ENST00000407418.7_1_22:39261880-39262189:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	939.5379638671875	1	939.53704	938.529764	0.84779	0.00079653	-0.29352	-0.00027577	0.55427	0.00052076	939.5364943619129	49.451	0.20575	49.451	49.286	49.492	0					5	3	2	0	0	0	0.77749	1	18859	18859		13.906	4.5586	1	18537000	+		32701	15423	20653	20765	31472	31472					0.058040093658974
TAHCVFMAY	9	Unmodified	_TAHCVFMAY_					0	0	0			REV__HCN1|p.G391C|1|0.28|ENSG00000164588|chr5:45396551-45396551|C/A|missense_variant	REV__HCN1|p.G391C|1|0.28|ENSG00000164588|chr5:45396551-45396551|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	521.7531127929688	2	521.72788	1041.44121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.396	1	21.014	20.514	21.514	-0.38288								0	0	0	0.76669	1	7528	7528		12.532	0.89125	1		+		32702	16869	20654	20766	31473	31473					-0.07785490260425831
TAHQWLGP	8	Unmodified	_TAHQWLGP_					0	0	0		VWA8|p.N701Kfs*12|1|0.16|ENSG00000102763|chr13:41787504-41787505|-/T|frameshift_variant;VWA8|p.N866Kfs*18|1|0.45|ENSG00000102763|chr13:41729582-41729583|-/T|frameshift_variant;nc|ENSG00000102763|A3KMH1-2|VWA8;VWA8|p.T1319Kfs*27|1|0.09|ENSG00000102763|chr13:41690186-41690186|G/-|frameshift_variant;VWA8|p.D1438Ifs*16|1|0.27|ENSG00000102763|chr13:41685063-41685063|T/-|frameshift_variant;VWA8|p.G1575Efs*53|1|0.25|ENSG00000102763|chr13:41611729-41611729|C/-|frameshift_variant;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	VWA8|p.N701Kfs*12|1|0.16|ENSG00000102763|chr13:41787504-41787505|-/T|frameshift_variant	VWA8|p.N701Kfs*12|1|0.16|ENSG00000102763|chr13:41787504-41787505|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	455.2324523925781	2	455.232502	908.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.208	1	23.208	22.708	23.708	0								0	0	0	0.8837	1	8254	8254		13.508	0	1				32703	1849	20655	20767	31474	31474					-0.0074363758824347315
TAIASTVQPPP	11	Unmodified	_TAIASTVQPPP_					0	0	0			REV__ENSG00000099822|ENST00000251287|HCN2	REV__ENSG00000099822|ENST00000251287|HCN2	MSMS	HCT116MG_D190212_S3	3	541.2976684570312	2	541.298039	1080.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.17	1	29.921	29.421	30.421	-0.24946								0	0	0	0.93552	1	10986	10986		13.906	0	1		+		32704	11047	20656	20768	31475	31475					0.04445708269122406
TAIDELLY	8	Unmodified	_TAIDELLY_					0	0	0		nc|ENSG00000138286|Q96BN6-2|FAM149B1;ENSG00000138286|ENST00000242505|FAM149B1	nc|ENSG00000138286|Q96BN6-2|FAM149B1	nc|ENSG00000138286|Q96BN6-2|FAM149B1	MULTI-MSMS	HCT116MG_D190212_S1	1	937.4892578125	1	937.48769	936.480414	0.83742	0.00078507	0.5876	0.00055087	1.425	0.0013359	937.4883582736069	51.73	0.26029	51.73	51.601	51.861	0					6	4	2	0	0	0	0.13911	1	19797	19797		86.121	4.2573	1	36681000			32705	3547	20657	20769	31476	31476					0.009632565664446702
TAIGPEPI	8	Unmodified	_TAIGPEPI_					0	0	0			REV__ZNF624|p.S207F|1|0.35|ENSG00000197566|chr17:16624266-16624266|G/A|missense_variant	REV__ZNF624|p.S207F|1|0.35|ENSG00000197566|chr17:16624266-16624266|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	399.2233581542969	2	399.223811	796.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.62	1	28.289	27.789	28.789	-0.33138								0	0	0	0.8837	1	10300	10300		14.582	0	1		+		32706	14078	20658	20770	31477	31477					0.026710220860991285
TAKAYTGFSSN	11	Unmodified	_TAKAYTGFSSN_					0	0	0		PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant;PPM1G|p.G393Afs*25|1|0.08|ENSG00000115241|chr2:27383389-27383389|C/-|frameshift_variant;ENSG00000115241|ENST00000344034|PPM1G	PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant	PPM1G|p.S354Lfs*7|1|0.39|ENSG00000115241|chr2:27383508-27383508|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	573.7748413085938	2	573.774928	1145.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.449	1	26.449	25.949	26.949	0								0	0	0	0.93295	1	9557	9557		15.248	1.3424	1				32707	2455	20659	20771	31478	31478					-0.031643566329421446
TAKELTEEKES	11	Unmodified	_TAKELTEEKES_					0	0	0		nc|ENSG00000014641|P40925-2|MDH1;ENSG00000014641|ENST00000233114|MDH1;nc|ENSG00000014641|P40925-3|MDH1	nc|ENSG00000014641|P40925-2|MDH1	nc|ENSG00000014641|P40925-2|MDH1	MULTI-MSMS	HCT116MG_D190212_S2	2	632.8170166015625	2	632.81699	1263.61943	0.77114	0.00048799	-1.1812	-0.00074751	-0.41009	-0.00025951	632.8162519255919	29.542	0.30978	29.242	29.031	29.34	-0.30095					8	5	2	0	0	0	0.72004	1	10823	10823		14.405	1.3629	1	24615000			32708	921	20660	20772	31479	31479					-0.0018387032673672365
TAKKIKRP	8	Unmodified	_TAKKIKRP_					0	0	0		nc|ENSG00000205221|Q6UXI7-2|VIT;nc|ENSG00000205221|Q6UXI7-5|VIT;nc|ENSG00000205221|Q6UXI7|VIT;ENSG00000205221|ENST00000379242|VIT;nc|ENSG00000205221|Q6UXI7-3|VIT	nc|ENSG00000205221|Q6UXI7-2|VIT	nc|ENSG00000205221|Q6UXI7-2|VIT	MSMS	HCT116MG_D190212_S4	4	471.3177795410156	2	471.316369	940.618185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.552	1	36.166	35.666	36.666	-0.38538								0	0	0	0.8837	1	13380	13380		8.5933	2.8329	1				32709	6373	20661	20773	31480	31480					0.14550049676358867
TAKRQKKG	8	Unmodified	_TAKRQKKG_					0	0	0		ENSG00000168438|ENST00000307731|CDC40;ENST00000606893.5_1_6:110501354-110532119:+|nuORF	ENSG00000168438|ENST00000307731|CDC40	ENSG00000168438|ENST00000307731|CDC40	MULTI-MSMS	HCT116MG_D190212_S4	4	460.282958984375	2	458.787976	915.561398	0.086073	3.9489E-05	0.20278	9.3034E-05	0.28886	0.00013252	458.7879931873366	50.739	3.5304	50.384	49.901	53.432	-0.35483					155	67	5	0	0	0	0.87635	1	18914	18914		0.69038	0	1	833500000			32710	5009	20662	20774	31481	31481					0.10024002119860143
TAKTWRWPRRW	11	Unmodified	_TAKTWRWPRRW_					0	0	0			REV__ENST00000302517.7_1_5:139060409-139060541:+|nuORF	REV__ENST00000302517.7_1_5:139060409-139060541:+|nuORF	MSMS	HCT116MG_D190212_S4	4	772.4210815429688	2	772.423294	1542.83203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.965	1	37.582	37.082	38.082	-0.38283								0	0	0	0.95954	1	13899	13899		1.3295	0.13619	1		+		32711	14798	20663	20775	31482	31482					0.08233150105070308
TAKVRHLV	8	Unmodified	_TAKVRHLV_					0	0	0			REV__ENST00000507048.1_1_5:432524-432644:+|nuORF	REV__ENST00000507048.1_1_5:432524-432644:+|nuORF	MSMS	HCT116MG_D190212_S4	4	462.2910461425781	2	462.292894	922.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.252	1	29.895	29.395	30.395	-0.3571								0	0	0	0.8837	1	10959	10959		5.7604	3.1829	1		+		32712	16153	20664	20776	31483	31483					0.10685190125241206
TALAPPAQPPP	11	Unmodified	_TALAPPAQPPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	HCT116MG_D190212_S3	3	530.264404296875	2	530.295299	1058.57605	0.57856	0.00030681	-0.15508	-8.2237E-05	0.42348	0.00022457	530.2951338075873	29.306	0.83335	29.084	28.525	29.359	-0.22195					40	15	4	0	0	0	0.72139	1	10438	10438		13.906	1.3745	1	48630000	+		32713	13752	20665	20777	31484	31484					0.04910029477309763
TALEPAVP	8	Unmodified	_TALEPAVP_					0	0	0			REV__ENSG00000161914|ENST00000293771|ZNF653	REV__ENSG00000161914|ENST00000293771|ZNF653	MSMS	HCT116MG_D190212_S3	3	399.2236022949219	2	399.223811	796.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.393	1	28.187	27.687	28.687	-0.20593								0	0	0	0.8837	1	10273	10273		14.582	0	1		+		32714	12861	20666	20778	31485	31485					0.026710220860991285
TALGPELLAL	10	Unmodified	_TALGPELLAL_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-MSMS	HCT116MG_D190212_S2	2	499.3002014160156	2	499.30005	996.585547	0.39445	0.00019695	-0.24332	-0.00012149	0.15114	7.5462E-05	499.29991040717385	54.722	0.20493	54.533	54.405	54.61	-0.1894					5	3	2	0	0	0	0.76634	1	21106	21106		14.838	0	1	28940000			32715	4599	20667	20779	31486	31486					0.08711797762850892
TALKEIYED	9	Unmodified	_TALKEIYED_					0	0	0			REV__ENSG00000171759|ENST00000553106|PAH	REV__ENSG00000171759|ENST00000553106|PAH	MULTI-MSMS	HCT116MG_D190212_S3	3	361.1855773925781	3	361.185245	1080.53391	-0.066757	-2.4111E-05	3.1109	0.0011236	3.0442	0.0010995	361.18555234549797	32.4	0.72915	32.121	31.942	32.671	-0.2784					31	13	4	0	0	0	0.35842	1	11890	11890		24.991	1.2012	1	7786600	+		32716	13358	20668	20780	31487	31487					-0.0031399072172462184
TALLKFLLLI	10	Unmodified	_TALLKFLLLI_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MSMS	HCT116MG_D190212_S3	3	572.8875122070312	2	572.888835	1143.76312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.819	1	31.548	31.048	32.048	-0.27028								0	0	0	0.96377	1	11639	11639		1.6526	0.17072	1		+		32717	13049	20669	20781	31488	31488					0.19698673032871739
TALLLLLL	8	Unmodified	_TALLLLLL_					0	0	0		TPCN1|p.L349Sfs*26|1|0.08|ENSG00000186815|chr12:113277020-113277020|G/-|frameshift_variant;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENSG00000239264|ENST00000379757|TXNDC5	TPCN1|p.L349Sfs*26|1|0.08|ENSG00000186815|chr12:113277020-113277020|G/-|frameshift_variant;ENSG00000239264|ENST00000379757|TXNDC5;REV__nc|ENSG00000213402|Q14761|PTPRCAP	ENSG00000239264|ENST00000379757|TXNDC5	MSMS	HCT116MG_D190212_S4	4	435.7107849121094	2	435.307147	868.599741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.861	1	25.57	25.07	26.07	-0.29022								0	0	0	0.8837	1	9185	9185		0.69038	0	1				32718	5909;6533;17288	20670	20782	31489	31489					0.16018494981813092
TALPAVPP	8	Unmodified	_TALPAVPP_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MSMS	HCT116MG_D190212_S4	4	383.2291259765625	2	383.228897	764.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.997	1	30.633	30.133	31.133	-0.36416								0	0	0	0.8217	1	11232	11232		20.871	0	1				32719	3745	20671	20783	31490	31490					0.05159629811328159
TALPVPPLVG	10	Unmodified	_TALPVPPLVG_					0	0	0			REV__ENST00000436210.1_1_22:36293530-36293989:-|nuORF	REV__ENST00000436210.1_1_22:36293530-36293989:-|nuORF	MSMS	HCT116MG_D190212_S1	1	482.2975769042969	2	482.29731	962.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.542	1	33.542	33.042	34.042	0								0	0	0	0.77279	1	12416	12416		32.305	7.6316	1		+		32720	15623	20672	20784	31491	31491					0.09728118971031563
TALRVPILKP	10	Unmodified	_TALRVPILKP_					0	0	0		ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000175470|ENST00000455566|PPP2R2D	ENSG00000175470|ENST00000455566|PPP2R2D	MSMS	HCT116MG_D190212_S1	1	554.75830078125	2	554.366059	1106.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.201	1	18.201	17.701	18.701	0								0	0	0	0.94107	1	6242	6242		6.7232	2.3939	1				32721	5382	20673	20785	31492	31492					0.1684744757048975
TALSLQLALP	10	Unmodified	_TALSLQLALP_					0	0	0		ENST00000590882.1_1_19:19459915-19460169:+|nuORF	ENST00000590882.1_1_19:19459915-19460169:+|nuORF	ENST00000590882.1_1_19:19459915-19460169:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	513.8139038085938	2	513.813325	1025.6121	0.22257	0.00011436	0.21024	0.00010802	0.43281	0.00022238	513.8135330728136	34.228	0.2601	33.933	33.819	34.079	-0.29419					7	4	2	0	0	0	0.45751	1	12636	12636		38.176	5.8701	1	2423600			32722	9030	20674	20786	31493	31493					0.10031486654156652
TALSPHEAP	9	Unmodified	_TALSPHEAP_					0	0	0			REV__ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant	REV__ZNF831|p.D1025Tfs*40|6|0.36|ENSG00000124203|chr20:59194085-59194085|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	461.7350158691406	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.914	1	27.592	27.092	28.092	-0.32157								0	0	0	0.15181	1	10014	10014		50.855	0	1		+		32723	11780	20675	20787	31494	31494					-0.00827378516294175
TALVLAPL	8	Unmodified	_TALVLAPL_					0	0	0			REV__ENST00000574030.5_2_16:55794553-55801328:+|nuORF	REV__ENST00000574030.5_2_16:55794553-55801328:+|nuORF	MSMS	HCT116MG_D190212_S3	3	399.25885009765625	2	399.260197	796.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.392	1	43.088	42.588	43.588	-0.30472								0	0	0	0.8837	1	16190	16190		2.5775	0	1		+		32724	16587	20676	20788	31495	31495					0.09944775879500867
TAMCVCCPCC	10	Unmodified	_TAMCVCCPCC_					0	0	0		TRIM42|p.N363Kfs*4|1|0.08|ENSG00000155890|chr3:140687764-140687765|-/A|frameshift_variant;nc|ENSG00000155890|Q8IWZ5-2|TRIM42;TRIM42|p.N363Tfs*36|1|0.16|ENSG00000155890|chr3:140687765-140687765|A/-|frameshift_variant;ENSG00000155890|ENST00000286349|TRIM42	TRIM42|p.N363Kfs*4|1|0.08|ENSG00000155890|chr3:140687764-140687765|-/A|frameshift_variant	TRIM42|p.N363Kfs*4|1|0.08|ENSG00000155890|chr3:140687764-140687765|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	517.1597900390625	2	517.158747	1032.30294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.664	1	11.72	11.22	12.22	0.055045								0	0	0	0.96911	1	3588	3588		0.45834	0.45834	1				32725	4266	20677	20789	31496	31496					-0.21191764158743354
TAMGKTKVEP	10	Unmodified	_TAMGKTKVEP_					0	0	0			REV__GAD1|p.A278T|1|0.38|ENSG00000128683|chr2:170845586-170845586|G/A|missense_variant	REV__GAD1|p.A278T|1|0.38|ENSG00000128683|chr2:170845586-170845586|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	531.7886352539062	2	531.286617	1060.55868	0.37395	0.00019868	0.1906	0.00010126	0.56456	0.00029994	531.2866146498966	38.502	0.51931	38.201	37.937	38.456	-0.30137					11	9	2	0	0	0	0.29999	1	14237	14237		5.2969	0	1	5260700	+		32726	16842	20678	20790	31497	31497					0.03082365880004545
TANGPNDL	8	Unmodified	_TANGPNDL_					0	0	0		CDH11|p.R526Nfs*48|1|0.07|ENSG00000140937|chr16:64971644-64971645|-/GT|frameshift_variant	CDH11|p.R526Nfs*48|1|0.07|ENSG00000140937|chr16:64971644-64971645|-/GT|frameshift_variant	CDH11|p.R526Nfs*48|1|0.07|ENSG00000140937|chr16:64971644-64971645|-/GT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	401.189208984375	2	401.1905	800.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.837	1	14.837	14.337	15.337	0								0	0	0	0.8837	1	4886	4886		5.7604	0	1				32727	382	20679	20791	31498	31498					-0.04172213475806075
TANTNTQDP	9	Unmodified	_TANTNTQDP_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	HCT116MG_D190212_S2	2	481.2153625488281	2	481.214703	960.414853	0.13838	6.6592E-05	0.50595	0.00024347	0.64434	0.00031007	481.2149346185252	16.363	0.31342	16.022	15.839	16.152	-0.34183					7	5	2	0	0	0	0.47829	1	5537	5537		18.135	1.1927	1	2133600			32728	903	20680	20792	31499	31499					-0.06693764626572829
TAPAPEPGPR	10	Unmodified	_TAPAPEPGPR_					0	0	0			REV__nc|ENSG00000178209|Q15149|PLEC	REV__nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	HCT116MG_D190212_S3	3	496.7623291015625	2	496.761623	991.508694	0.44334	0.00022024	0.0082275	4.0871E-06	0.45157	0.00022432	496.76165151556893	29.115	0.88562	28.893	28.577	29.463	-0.22196					23	16	2	0	0	0	0.35357	2	10551	10551;10676		45.7	7.1752	1	5166400	+		32729	17228	20681	20793	31500;31501	31500					0.012599992663808735
TAPAPEPGPR	10	Unmodified	_TAPAPEPGPR_					0	0	0			REV__nc|ENSG00000178209|Q15149|PLEC	REV__nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	HCT116MG_D190212_S3	3	497.25360107421875	2	496.761623	991.508694	0.44334	0.00022024	0.0082275	4.0871E-06	0.45157	0.00022432	496.76165151556893	29.115	0.88562	28.893	28.577	29.463	-0.22196					23	16	2	0	0	0	0.28233	1	10602	10602		21.537	12.792	1	5166400	+		32730	17228	20681	20793	31502	31502					0.012599992663808735
TAPAPEPGPR	10	Unmodified	_TAPAPEPGPR_					0	0	0			REV__nc|ENSG00000178209|Q15149|PLEC	REV__nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	HCT116MG_D190212_S4	4	496.7619323730469	2	496.761623	991.508694	0.41149	0.00020441	-0.20698	-0.00010282	0.2045	0.00010159	496.7616038901524	29.252	0.83135	28.903	28.566	29.397	-0.34921					23	15	2	0	0	0	0.21913	1	10544	10544		57.722	17.765	1	4989200	+		32731	17228	20681	20793	31503	31503					0.012599992663808735
TAPAPEPGPR	10	Unmodified	_TAPAPEPGPR_					0	0	0			REV__nc|ENSG00000178209|Q15149|PLEC	REV__nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	HCT116MG_D190212_S4	4	497.2537841796875	2	496.761623	991.508694	0.41149	0.00020441	-0.20698	-0.00010282	0.2045	0.00010159	496.7616038901524	29.252	0.83135	28.903	28.566	29.397	-0.34921					23	15	2	0	0	0	0.24491	1	10607	10607		45.7	15.063	1	4989200	+		32732	17228	20681	20793	31504	31504					0.012599992663808735
TAPAVPSIPSP	11	Unmodified	_TAPAVPSIPSP_					0	0	0		nc|ENSG00000101489|Q9BZC1-3|CELF4;nc|ENSG00000101489|Q9BZC1-2|CELF4;nc|ENSG00000101489|Q9BZC1-4|CELF4;ENSG00000101489|ENST00000420428|CELF4;CELF4|p.P346Hfs*54|2|0.22|ENSG00000101489|chr18:37270830-37270830|G/-|frameshift_variant;CELF4|p.Q412Sfs*26|1|0.61|ENSG00000101489|chr18:37264689-37264689|G/-|frameshift_variant;nc|ENSG00000101489|Q9BZC1-5|CELF4	nc|ENSG00000101489|Q9BZC1-3|CELF4	nc|ENSG00000101489|Q9BZC1-3|CELF4	MSMS	HCT116MG_D190212_S3	3	518.7874145507812	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.862	1	23.801	23.301	24.301	-0.061449								0	0	0	0.84073	1	8446	8446		27.629	2.6378	1				32733	1796	20682	20794	31505	31505					0.04370323240414109
TAPEQQVSPTE	11	Unmodified	_TAPEQQVSPTE_					0	0	0			REV__ENSG00000161180|ENST00000292779|CCDC116	REV__ENSG00000161180|ENST00000292779|CCDC116	MULTI-MSMS	HCT116MG_D190212_S4	4	593.7830200195312	2	593.78295	1185.55135	0.78379	0.0004654	0.46066	0.00027353	1.2444	0.00073893	593.7827208839311	31.783	0.2076	31.408	31.33	31.538	-0.37529					5	3	2	0	0	0	0.7259	1	11579	11579		12.241	4.3305	1	2663800	+		32734	12852	20683	20795	31506	31506					-0.03400695186678604
TAPKSAQTVAK	11	Unmodified	_TAPKSAQTVAK_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	HCT116MG_D190212_S1	1	552.319580078125	2	551.316763	1100.61897	0.61104	0.00033688	-0.15283	-8.4256E-05	0.45822	0.00025262	551.3166445493554	17.959	0.31276	17.959	17.724	18.037	0					10	5	3	0	0	0	0.70721	1	6120	6120		29.841	0	1	28062000			32735	3625	20684	20796	31507	31507					0.07268799534745085
TAPLHYCAK	9	Unmodified	_TAPLHYCAK_					0	0	0			REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|25|1|sense	REV__HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|25|1|sense	MSMS	HCT116MG_D190212_S2	2	502.2566223144531	2	502.25512	1002.49569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.396	1	17.047	16.547	17.547	-0.34933								0	0	0	0.76603	1	5918	5918		14.838	3.198	1		+		32736	16881	20685	20797	31508	31508					-0.005461551173766566
TAPLPGPL	8	Unmodified	_TAPLPGPL_					0	0	0			REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	MSMS	HCT116MG_D190212_S4	4	383.2283935546875	2	383.228897	764.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.824	1	27.502	27.002	28.002	-0.32157								0	0	0	0.8396	1	9978	9978		19.439	0	1		+		32737	10505	20686	20798	31509	31509					0.051596298113167904
TAPPMPADPP	10	Unmodified	_TAPPMPADPP_					0	0	0			REV__sp|F5HG51|PRIM_HCMVMDNAprimaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL70PE=3SV=1	REV__sp|F5HG51|PRIM_HCMVMDNAprimaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL70PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	496.9728088378906	2	497.239135	992.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.797	1	24.421	23.921	24.921	-0.37562								0	0	0	0.90023	1	8902	8902		15.847	2.3393	1		+		32738	17562	20687	20799	31510	31510					-0.03281567591170642
TAPRANPWPQ	10	Unmodified	_TAPRANPWPQ_					0	0	0			REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	REV__nc|ENSG00000148498|Q8TEW0-5|PARD3	MSMS	HCT116MG_D190212_S4	4	569.292724609375	2	569.293622	1136.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.667	1	35.281	34.781	35.781	-0.38606								0	0	0	0.92917	1	13034	13034		9.3831	1.2276	1		+		32739	12548	20688	20800	31511	31511					0.009867794233286986
TAPRQPDKTH	10	Unmodified	_TAPRQPDKTH_					0	0	0			REV__ENST00000465217.1_1_3:49008110-49012121:+|nuORF	REV__ENST00000465217.1_1_3:49008110-49012121:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	575.80224609375	2	575.801811	1149.58907	0.59333	0.00034164	0.14969	8.619E-05	0.74302	0.00042783	575.8017078726762	24.557	0.46668	24.288	24.082	24.549	-0.26881					14	8	3	0	0	0	0.78781	1	8653	8653		13.042	0	1	4238100	+		32740	15819	20689	20801	31512	31512					0.020258605894241555
TAPSGAHTEP	10	Unmodified	_TAPSGAHTEP_					0	0	0		nc|ENSG00000009765|Q6PHW0-7|IYD;nc|ENSG00000009765|Q6PHW0-3|IYD;nc|ENSG00000009765|Q6PHW0-6|IYD;nc|ENSG00000009765|Q6PHW0-5|IYD;ENSG00000009765|ENST00000344419|IYD;nc|ENSG00000009765|Q6PHW0-4|IYD	nc|ENSG00000009765|Q6PHW0-7|IYD	nc|ENSG00000009765|Q6PHW0-7|IYD	MULTI-MSMS	HCT116MG_D190212_S3	3	484.237060546875	2	484.227613	966.440674	-0.1158	-5.6072E-05	-1.8103	-0.0008766	-1.9261	-0.00093267	484.22800028423825	17.509	0.88454	17.59	16.909	17.794	0.081358					15	16	2	0	0	0	0.64004	1	5613	5613		25.399	7.2643	1	966280			32741	871	20690	20802	31513	31513					-0.043888703842753785
TAPSHKPEAQQ	11	Unmodified	_TAPSHKPEAQQ_					0	0	0			REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	REV__STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	597.7896118164062	2	597.299101	1192.58365	1.0689	0.00063845	-0.70622	-0.00042182	0.36268	0.00021663	597.7999878179803	19.607	0.56215	19.414	19.07	19.632	-0.19368					13	10	2	0	0	0	0.70662	1	6613	6613		19.362	0.98885	1	1746200	+		32742	11905	20691	20803	31514	31514					-0.00493862993039329
TAPSNTAMAD	10	Unmodified	_TAPSNTAMAD_					0	0	0		ROR2|p.S882A|1|0.09|ENSG00000169071|chr9:91723850-91723850|A/C|missense_variant	ROR2|p.S882A|1|0.09|ENSG00000169071|chr9:91723850-91723850|A/C|missense_variant	ROR2|p.S882A|1|0.09|ENSG00000169071|chr9:91723850-91723850|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	489.7137451171875	2	489.713482	977.41241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.928	1	17.012	16.512	17.512	0.084467								0	0	0	0.91638	1	5652	5652		12.241	1.4167	1				32743	18120	20692	20804	31515	31515					-0.07719936355886148
TAPSRRALVVW	11	Unmodified	_TAPSRRALVVW_					0	0	0			REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	REV__ENST00000468057.5_1_1:205760663-205770562:-|nuORF	MSMS	HCT116MG_D190212_S3	3	628.4699096679688	2	628.367121	1254.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.949	1	37.647	37.147	38.147	-0.30137								0	0	0	0.95113	1	14041	14041		5.7319	0.43497	1		+		32744	12017	20693	20805	31516	31516					0.10251876308279861
TAPTPSVHGPQ	11	Unmodified	_TAPTPSVHGPQ_					0	0	0			REV__ENSG00000105245|ENST00000252891|NUMBL	REV__ENSG00000105245|ENST00000252891|NUMBL	MSMS	HCT116MG_D190212_S4	4	546.2766723632812	2	546.277638	1090.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.404	1	29.054	28.554	29.554	-0.34921								0	0	0	0.9465	1	10617	10617		8.1555	0.24537	1		+		32745	11242	20694	20806	31517	31517					-0.0009263305048534676
TAQCFYQYTY	10	Unmodified	_TAQCFYQYTY_					0	0	0			REV__nc|ENSG00000168538|Q7Z392-2|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-2|TRAPPC11	MULTI-MSMS	HCT116MG_D190212_S2	2	643.9339599609375	2	644.271164	1286.52777	0.73789	0.0004754	1.656	0.0010669	2.3938	0.0015423	644.2724811854981	29.736	0.51617	29.435	29.237	29.753	-0.30095					17	9	3	0	0	0	0.53455	1	10970	10970		32.786	7.3864	1	21286000	+		32746	17206	20695	20807	31518	31518					-0.10402832224872327
TAQDYRGAPGA	11	Unmodified	_TAQDYRGAPGA_					0	0	0			REV__nc|ENSG00000137076|Q9Y490-2|TLN1	REV__nc|ENSG00000137076|Q9Y490-2|TLN1	MULTI-MSMS	HCT116MG_D190212_S3	3	553.764892578125	2	553.764894	1105.51524	0.3909	0.00021647	-0.00091938	-5.0912E-07	0.38998	0.00021596	553.764673792495	18.884	0.72905	18.953	18.354	19.083	0.069159					21	13	2	0	0	0	0.60456	1	6362	6362		34.932	8.9114	1	5573500	+		32747	12161	20696	20808	31519	31519					-0.033301075729013974
TAQEEAAP	8	Unmodified	_TAQEEAAP_					0	0	0			REV__TRAM1L1|p.S132Lfs*9|2|0.3|ENSG00000174599|chr4:117085000-117085000|A/-|frameshift_variant	REV__TRAM1L1|p.S132Lfs*9|2|0.3|ENSG00000174599|chr4:117085000-117085000|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	816.3736572265625	1	816.373389	815.366112	0.97684	0.00079747	-0.076917	-6.2793E-05	0.89992	0.00073467	816.3730859598097	19.508	0.31251	19.568	19.438	19.75	0.05983					7	5	2	0	0	0	0.1772	1	6731	6731		78.149	3.7266	1	1789800	+		32748	13489	20697	20809	31520	31520					-0.04895633195667415
TAQEEAAP	8	Unmodified	_TAQEEAAP_					0	0	0			REV__TRAM1L1|p.S132Lfs*9|2|0.3|ENSG00000174599|chr4:117085000-117085000|A/-|frameshift_variant	REV__TRAM1L1|p.S132Lfs*9|2|0.3|ENSG00000174599|chr4:117085000-117085000|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	816.373389	815.366112	0.81741	0.00066731	-0.30072	-0.0002455	0.51669	0.00042181	816.3730918759466	19.985	0.31057	19.61	19.455	19.765	-0.37503	0.020863	-5.8448E-05	NaN	78.149	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4244800	+		32749	13489	20697	20809							-0.04895633195667415
TAQEEAAP	8	Unmodified	_TAQEEAAP_					0	0	0			REV__TRAM1L1|p.S132Lfs*9|2|0.3|ENSG00000174599|chr4:117085000-117085000|A/-|frameshift_variant	REV__TRAM1L1|p.S132Lfs*9|2|0.3|ENSG00000174599|chr4:117085000-117085000|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	816.373389	815.366112	0.97684	0.00079747	-0.076917	-6.2793E-05	0.89992	0.00073467	816.3730859598097	19.508	0.31251	19.568	19.438	19.75	0.05983	-0.020863	0.00012426	NaN	78.149	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1789800	+		32750	13489	20697	20809							-0.04895633195667415
TAQKDPPT	8	Unmodified	_TAQKDPPT_					0	0	0			REV__RNPS1|p.P290Rfs*39|1|0.5|ENSG00000205937|chr16:2254013-2254013|G/-|frameshift_variant	REV__RNPS1|p.P290Rfs*39|1|0.5|ENSG00000205937|chr16:2254013-2254013|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	429.088623046875	2	429.2218	856.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.746	1	17.827	17.327	18.327	0.081358								0	0	0	0.8837	1	5982	5982		10.824	0.64053	1		+		32751	17478	20698	20810	31521	31521					-0.004910674076199939
TAQLASTLAP	10	Unmodified	_TAQLASTLAP_					0	0	0		ENST00000483578.1_1_16:30759747-30760167:+|nuORF	ENST00000483578.1_1_16:30759747-30760167:+|nuORF	ENST00000483578.1_1_16:30759747-30760167:+|nuORF	MSMS	HCT116MG_D190212_S4	4	486.7716979980469	2	486.771657	971.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.541	1	22.306	21.806	22.806	-0.23541								0	0	0	0.61414	1	7847	7847		41.956	0.11592	1				32752	8274	20699	20811	31522	31522					0.041857502063294305
TAQLGLQDPPQ	11	Unmodified	_TAQLGLQDPPQ_					0	0	0			REV__ENST00000494322.5_1_2:219247091-219256951:+|nuORF	REV__ENST00000494322.5_1_2:219247091-219256951:+|nuORF	MSMS	HCT116MG_D190212_S3	3	584.3041381835938	2	584.303852	1166.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.17	1	21.19	20.69	21.69	0.019817								0	0	0	0.8876	1	7364	7364		21.59	5.743	1		+		32753	16073	20700	20812	31523	31523					0.01651905292465017
TAQLGLQDPPQ	11	Unmodified	_TAQLGLQDPPQ_					0	0	0			REV__ENST00000494322.5_1_2:219247091-219256951:+|nuORF	REV__ENST00000494322.5_1_2:219247091-219256951:+|nuORF	MSMS	HCT116MG_D190212_S3	3	584.3046875	2	584.303852	1166.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.99	1	21.99	21.49	22.49	0.00074577								0	0	0	0.90285	1	7691	7691		19.626	2.5131	1		+		32754	16073	20700	20812	31524	31524					0.01651905292465017
TAQLGLQDPPQ	11	Unmodified	_TAQLGLQDPPQ_					0	0	0			REV__ENST00000494322.5_1_2:219247091-219256951:+|nuORF	REV__ENST00000494322.5_1_2:219247091-219256951:+|nuORF	MSMS	HCT116MG_D190212_S4	4	584.3040771484375	2	584.303852	1166.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.258	1	22.03	21.53	22.53	-0.22777								0	0	0	0.90285	1	7732	7732		19.626	0.26401	1		+		32755	16073	20700	20812	31525	31525					0.01651905292465017
TAQPAPQPPQP	11	Unmodified	_TAQPAPQPPQP_					0	0	0			REV__ENSG00000253293|ENST00000283921|HOXA10	REV__ENSG00000253293|ENST00000283921|HOXA10	MSMS	HCT116MG_D190212_S3	3	566.2931518554688	2	566.293288	1130.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.076	1	19.145	18.645	19.645	0.069159								0	0	0	0.91979	1	6519	6519		17.443	0	1		+		32756	14386	20701	20813	31526	31526					0.011959399836086959
TAQPDHTQAP	10	Unmodified	_TAQPDHTQAP_					0	0	0		nc|ENSG00000141644|Q9UIS9-4|MBD1;nc|ENSG00000141644|Q9UIS9-11|MBD1;nc|ENSG00000141644|Q9UIS9-8|MBD1;nc|ENSG00000141644|Q9UIS9-7|MBD1;nc|ENSG00000141644|Q9UIS9-6|MBD1;nc|ENSG00000141644|Q9UIS9-5|MBD1;nc|ENSG00000141644|Q9UIS9-10|MBD1;nc|ENSG00000141644|Q9UIS9-2|MBD1;ENSG00000141644|ENST00000269468|MBD1;nc|ENSG00000141644|Q9UIS9-9|MBD1;nc|ENSG00000141644|Q9UIS9-12|MBD1	nc|ENSG00000141644|Q9UIS9-4|MBD1	nc|ENSG00000141644|Q9UIS9-4|MBD1	MULTI-SECPEP	HCT116MG_D190212_S4	4	533.191650390625	2	533.25162	1064.48869	0.39869	0.0002126	-0.099809	-5.3223E-05	0.29888	0.00015938	533.2515701034848	19.221	0.98772	19.035	18.453	19.441	-0.18674					24	18	2	0	0	0	0.27462	1	6540	6540		24.021	4.6586	1	2288000			32757	3732	20702	20814	31527	31527					-0.04097796464225212
TAQPRPAGA	9	Unmodified	_TAQPRPAGA_					0	0	0		ENST00000513355.2_1_9:6007786-6007822:-|nuORF	ENST00000513355.2_1_9:6007786-6007822:-|nuORF	ENST00000513355.2_1_9:6007786-6007822:-|nuORF	MSMS	HCT116MG_D190212_S3	3	434.735595703125	2	434.735409	867.456264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.552	1	17.633	17.133	18.133	0.081358								0	0	0	0.22299	1	5904	5904		45.7	3.86	1				32758	8511	20703	20815	31528	31528					0.017234609234265008
TAQQLEQLTI	10	Unmodified	_TAQQLEQLTI_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	HCT116MG_D190212_S3	3	572.698486328125	2	572.814053	1143.61355	0.44061	0.00025239	-0.034602	-1.9821E-05	0.40601	0.00023257	572.8140254888526	34.979	0.46722	34.682	34.544	35.011	-0.29707					22	8	4	0	0	0	0.65652	1	12968	12968		24.021	1.2843	1	157850000	+		32759	12616	20704	20816	31529	31529					0.047490759522816006
TAQQLEQLTI	10	Unmodified	_TAQQLEQLTI_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	HCT116MG_D190212_S4	4	572.790283203125	2	572.814053	1143.61355	0.5696	0.00032627	-0.062519	-3.5812E-05	0.50708	0.00029046	572.8139678349239	35.11	0.36289	34.724	34.542	34.905	-0.38606					17	6	4	0	0	0	0.65652	1	12819	12819		24.021	0	1	61698000	+		32760	12616	20704	20816	31530	31530					0.047490759522816006
TAQQSLVT	8	Unmodified	_TAQQSLVT_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	HCT116MG_D190212_S2	2	424.22930908203125	2	424.229625	846.444697	0.26573	0.00011273	-0.57206	-0.00024269	-0.30633	-0.00012995	424.2293154262488	24.29	0.26053	23.91	23.822	24.082	-0.38003					6	4	2	0	0	0	0.61955	1	8726	8726		30.637	0	1	8815900			32761	9635	20705	20817	31531	31531					0.015332191094330483
TAQSADPQWEQ	11	Unmodified	_TAQSADPQWEQ_					0	0	0		SERPIND1|p.N127Tfs*15|1|0.49|ENSG00000099937|chr22:20779691-20779691|A/-|frameshift_variant;ENSG00000099937|ENST00000215727|SERPIND1	SERPIND1|p.N127Tfs*15|1|0.49|ENSG00000099937|chr22:20779691-20779691|A/-|frameshift_variant	SERPIND1|p.N127Tfs*15|1|0.49|ENSG00000099937|chr22:20779691-20779691|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	631.2800903320312	2	630.778199	1259.54184	0.40061	0.0002527	0.31534	0.00019891	0.71595	0.00045161	630.7781349627405	31.812	0.36463	31.542	31.273	31.638	-0.27028					9	6	2	0	0	0	0.69464	1	11659	11659		23.79	4.4278	1	3228100			32762	1646	20706	20818	31532	31532					-0.07754463472224415
TAQSADPQWEQ	11	Unmodified	_TAQSADPQWEQ_					0	0	0		SERPIND1|p.N127Tfs*15|1|0.49|ENSG00000099937|chr22:20779691-20779691|A/-|frameshift_variant;ENSG00000099937|ENST00000215727|SERPIND1	SERPIND1|p.N127Tfs*15|1|0.49|ENSG00000099937|chr22:20779691-20779691|A/-|frameshift_variant	SERPIND1|p.N127Tfs*15|1|0.49|ENSG00000099937|chr22:20779691-20779691|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	630.778199	1259.54184	0.28896	0.00018227	0.47274	0.00029819	0.7617	0.00048047	631.2802079992038	31.835	0.51933	31.46	31.07	31.59	-0.37529	-0.041017	3.6495E-05	NaN	23.79	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4314900			32763	1646	20706	20818							-0.07754463472224415
TAQSLQGAQP	10	Unmodified	_TAQSLQGAQP_					0	0	0		nc|ENSG00000166589|O75309-3|CDH16;nc|ENSG00000166589|O75309-4|CDH16;nc|ENSG00000166589|O75309-2|CDH16;ENSG00000166589|ENST00000299752|CDH16	nc|ENSG00000166589|O75309-3|CDH16	nc|ENSG00000166589|O75309-3|CDH16	MULTI-MSMS	HCT116MG_D190212_S3	3	500.75714111328125	2	500.756538	999.498523	0.56976	0.00028531	-0.81193	-0.00040658	-0.24217	-0.00012127	500.75647931409395	26.424	0.9897	26.274	25.838	26.827	-0.14924					26	18	2	0	0	0	0.35312	1	9548	9548		45.74	5.5007	1	3100600			32764	4869	20707	20819	31533	31533					-0.001246084588501617
TAQYDAGAGSP	11	Unmodified	_TAQYDAGAGSP_					0	0	0		GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;GAK|p.V881Gfs*39|1|0.23|ENSG00000178950|chr4:867186-867187|-/C|frameshift_variant;GAK|p.P955Lfs*36|1|0.25|ENSG00000178950|chr4:866964-866964|G/-|frameshift_variant;GAK|p.P1133Lfs*23|1|0.3|ENSG00000178950|chr4:851860-851860|G/-|frameshift_variant;nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant;ENST00000509566.1_1_4:844107-866085:-|nuORF	GAK|p.S905Pfs*40|1|0.15|ENSG00000178950|chr4:867116-867116|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	519.13916015625	2	519.230353	1036.44615	0.30913	0.00016051	0.090763	4.7127E-05	0.39989	0.00020764	519.2303409772508	22.101	0.31264	21.716	21.531	21.844	-0.38503					20	5	5	0	0	0	0.71532	1	7850	7850		16.149	7.4037	1	57714000			32765	9177;8488	20708	20820	31534	31534					-0.07061191592470095
TARDQPGPQP	10	Unmodified	_TARDQPGPQP_					0	0	0		ENST00000549273.5_1_19:49119361-49119457:-|nuORF	ENST00000549273.5_1_19:49119361-49119457:-|nuORF	ENST00000549273.5_1_19:49119361-49119457:-|nuORF	MSMS	HCT116MG_D190212_S4	4	533.7673950195312	2	533.767437	1065.52032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.96	1	20.75	20.25	21.25	-0.20959								0	0	0	0.90892	1	7207	7207		13.906	0	1				32766	8745	20709	20821	31535	31535					-0.009818037102832022
TARELKTP	8	Unmodified	_TARELKTP_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6;DCAF6|p.S294del|1|0.3|ENSG00000143164|chr1:167993415-167993417|CTT/-|inframe_deletion;ENST00000560524.1_1_15:29526351-29527221:-|nuORF	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MSMS	HCT116MG_D190212_S4	4	458.2301330566406	2	458.266542	914.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.972	1	20.762	20.262	21.262	-0.20959								0	0	0	0.8837	1	7212	7212		14.838	2.3067	1				32767	3790	20710	20822	31536	31536					0.05785187271760606
TARGWPRML	9	Unmodified	_TARGWPRML_					0	0	0		ENST00000348520.10_2_14:104095586-104095706:+|nuORF	ENST00000348520.10_2_14:104095586-104095706:+|nuORF	ENST00000348520.10_2_14:104095586-104095706:+|nuORF	MSMS	HCT116MG_D190212_S1	1	363.19921875	3	363.199166	1086.57567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.028	1	32.028	31.528	32.528	0								0	0	0	0.7689	1	11805	11805		2.7352	0	1				32768	7270	20711	20823	31537	31537					0.035843312764882285
TARGYDQQP	9	Unmodified	_TARGYDQQP_					0	0	0		ENST00000533210.5_1_8:144649355-144650416:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	519.1390380859375	2	518.246338	1034.47812	0.26848	0.00013914	0.12361	6.4061E-05	0.39209	0.0002032	518.2464022212265	17.788	0.78369	17.431	16.814	17.597	-0.35647					24	14	2	0	0	0	0.57626	1	6113	6113		12.532	0	1	7055600			32769	8645	20712	20824	31538	31538					-0.03773779118660059
TARKKKKK	8	Unmodified	_TARKKKKK_					0	0	0		ENST00000567998.5_1_16:28621482-28621938:-|nuORF	ENST00000567998.5_1_16:28621482-28621938:-|nuORF	ENST00000567998.5_1_16:28621482-28621938:-|nuORF	MSMS	HCT116MG_D190212_S1	1	494.34295654296875	2	494.342918	986.671283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.539	1	63.539	63.039	64.039	0								0	0	0	0.8837	1	24545	24545		0	0	1				32770	8871	20713	20825	31539	31539					0.1774142745903191
TARKKLKI	8	Unmodified	_TARKKLKI_					0	0	0		tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	479.3327331542969	2	479.332019	956.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.884	1	14.565	14.065	15.065	-0.31952								0	0	0	0.8837	1	4906	4906		2.5775	0	1				32771	18445	20714	20826	31540	31540					0.16942622710462274
TARKKLKI	8	Unmodified	_TARKKLKI_					0	0	0		tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	479.7301940917969	2	479.332019	956.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.637	1	16.722	16.222	17.222	0.085424								0	0	0	0.8837	1	5535	5535		4.756	0	1				32772	18445	20714	20826	31541	31541					0.16942622710462274
TARKKLKI	8	Unmodified	_TARKKLKI_					0	0	0		tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	tr|U7STK4|U7STK4_FUSNUTypeIVsecretionsystemproteinVirD4OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01517PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	479.3331298828125	2	479.332019	956.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.033	1	30.669	30.169	31.169	-0.36416								0	0	0	0.8837	1	11246	11246		2.5775	0	1				32773	18445	20714	20826	31542	31542					0.16942622710462274
TARNIEEA	8	Unmodified	_TARNIEEA_					0	0	0		tr|U7SIM9|U7SIM9_FUSNUThiamine-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiEPE=3SV=1	tr|U7SIM9|U7SIM9_FUSNUThiamine-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiEPE=3SV=1	tr|U7SIM9|U7SIM9_FUSNUThiamine-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiEPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	452.23028564453125	2	452.230156	902.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.067	1	16.152	15.652	16.652	0.085424								0	0	0	0.8837	1	5305	5305		8.5933	0	1				32774	18305	20715	20827	31543	31543					-0.009365665216705565
TARNIPRGPQ	10	Unmodified	_TARNIPRGPQ_					0	0	0		ENST00000546226.5_1_11:118963422-118963990:+|nuORF;ENST00000543543.5_1_11:118963098-118963990:+|nuORF;nc|ENSG00000256269|P08397-4|HMBS;ENST00000542044.5_1_11:118959775-118963990:+|nuORF;nc|ENSG00000256269|P08397-3|HMBS;nc|ENSG00000256269|P08397-2|HMBS;ENSG00000256269|ENST00000652429|HMBS	ENST00000546226.5_1_11:118963422-118963990:+|nuORF	ENST00000546226.5_1_11:118963422-118963990:+|nuORF	MSMS	HCT116MG_D190212_S3	3	554.9923706054688	2	555.312346	1108.61014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.374	1	26.224	25.724	26.724	-0.14924								0	0	0	0.91279	1	9459	9459		13.042	1.5478	1				32775	6609	20716	20828	31544	31544					0.06017870688947369
TARRLIPP	8	Unmodified	_TARRLIPP_					0	0	0			REV__NLRC5|p.P449Lfs*17|1|0.21|ENSG00000140853|chr16:57026284-57026284|C/-|frameshift_variant	REV__NLRC5|p.P449Lfs*17|1|0.21|ENSG00000140853|chr16:57026284-57026284|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	462.14654541015625	2	462.292894	922.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.768	1	34.471	33.971	34.971	-0.29707								0	0	0	0.8837	1	12809	12809		10.183	4.423	1		+		32776	12313	20717	20829	31545	31545					0.10685190125229838
TARSGVRQGT	10	Unmodified	_TARSGVRQGT_					0	0	0			REV__nc|ENSG00000173805|P54257-4|HAP1	REV__nc|ENSG00000173805|P54257-4|HAP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	517.2568969726562	2	516.780879	1031.5472	0.43435	0.00022446	2.9511	0.0015251	3.3855	0.0017495	517.2842680556317	31.346	0.20672	31.097	30.992	31.198	-0.24883					5	3	2	0	0	0	0.26991	1	11556	11556		28.495	10.348	1	3664100	+		32777	17217	20718	20830	31546	31546					0.03269304900913994
TARTPSTPPA	10	Unmodified	_TARTPSTPPA_					0	0	0		ENST00000578542.5_1_17:57233115-57247147:+|nuORF	ENST00000578542.5_1_17:57233115-57247147:+|nuORF	ENST00000578542.5_1_17:57233115-57247147:+|nuORF	MSMS	HCT116MG_D190212_S4	4	499.767578125	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.404	1	16.24	15.74	16.74	-0.16364								0	0	0	0.91279	1	5367	5367		13.042	2.9685	1				32778	8940	20719	20831	31547	31547					0.020399819207909786
TARVEDRQP	9	Unmodified	_TARVEDRQP_					0	0	0		ENST00000493329.1_1_2:113953884-113954034:+|nuORF	ENST00000493329.1_1_2:113953884-113954034:+|nuORF	ENST00000493329.1_1_2:113953884-113954034:+|nuORF	MSMS	HCT116MG_D190212_S3	3	536.1656494140625	2	536.280712	1070.54687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.807	1	21.808	21.308	22.308	0.00074577								0	0	0	0.76669	1	7618	7618		12.532	0	1				32779	8360	20720	20832	31548	31548					0.014418851810432898
TARWQAPQV	9	Unmodified	_TARWQAPQV_					0	0	0		USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant;ENST00000219689.11_1_16:23083485-23091356:-|nuORF	USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant	USP31|p.H723Tfs*68|1|0.2|ENSG00000103404|chr16:23079956-23079956|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.2982788085938	2	528.78289	1055.55123	0.42837	0.00022651	0.56453	0.00029851	0.9929	0.00052503	528.7828289439457	25.373	0.41724	24.998	24.764	25.181	-0.37521					11	7	2	0	0	0	0.23771	1	9074	9074		10.074	0.6908	1	7905100			32780	18686	20721	20833	31549	31549					0.02567394394600342
TASAGRRPSP	10	Unmodified	_TASAGRRPSP_					0	0	0			REV__ENST00000457389.6_1_6:28109752-28112110:+|nuORF	REV__ENST00000457389.6_1_6:28109752-28112110:+|nuORF	MSMS	HCT116MG_D190212_S4	4	500.7568359375	2	500.270147	998.525741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.391	1	26.09	25.59	26.59	-0.30087								0	0	0	0.83705	1	9399	9399		24.021	2.2739	1		+		32781	15758	20722	20834	31550	31550					0.026419198721782777
TASALSTGSPP	11	Unmodified	_TASALSTGSPP_					0	0	0		nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3	nc|ENSG00000049246|P56645|PER3	nc|ENSG00000049246|P56645|PER3	MSMS	HCT116MG_D190212_S3	3	494.75079345703125	2	494.750921	987.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.17	1	19.239	18.739	19.739	0.069159								0	0	0	0.91433	1	6557	6557		18.146	3.3081	1				32782	1040	20723	20835	31551	31551					-0.0069543055299163825
TASAPGPAAPD	11	Unmodified	_TASAPGPAAPD_					0	0	0		TAF5|p.F374Lfs*4|1|0.34|ENSG00000148835|chr10:103379611-103379611|T/-|frameshift_variant;nc|ENSG00000148835|Q15542-2|TAF5;ENSG00000148835|ENST00000369839|TAF5	TAF5|p.F374Lfs*4|1|0.34|ENSG00000148835|chr10:103379611-103379611|T/-|frameshift_variant	TAF5|p.F374Lfs*4|1|0.34|ENSG00000148835|chr10:103379611-103379611|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	477.7297668457031	2	477.729989	953.445425	0.44782	0.00021394	-0.80055	-0.00038244	-0.35272	-0.00016851	477.7296992253061	19.565	0.30697	19.371	19.226	19.533	-0.19368					8	5	2	0	0	0	0.68267	1	6660	6660		26.268	4.5215	1	2942000			32783	4035	20724	20836	31552	31552					-0.03315986241534574
TASCLCADPA	10	Unmodified	_TASCLCADPA_					0	0	0		ENST00000397901.7_1_16:89712324-89712471:-|nuORF	ENST00000397901.7_1_16:89712324-89712471:-|nuORF	ENST00000397901.7_1_16:89712324-89712471:-|nuORF	MSMS	HCT116MG_D190212_S4	4	476.1984558105469	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.543	1	21.325	20.825	21.825	-0.21832								0	0	0	0.92917	1	7443	7443		9.3831	0.035688	1				32784	7676	20725	20837	31553	31553					-0.09342377256677992
TASINERFEN	10	Unmodified	_TASINERFEN_					0	0	0			REV__ENSG00000165105|ENST00000376447|RASEF	REV__ENSG00000165105|ENST00000376447|RASEF	MULTI-SECPEP	HCT116MG_D190212_S4	4	591.2993774414062	2	590.783284	1179.55202	0.7259	0.00042885	-0.052003	-3.0723E-05	0.6739	0.00039813	590.7831371020985	23.909	0.78015	23.651	23.053	23.833	-0.25816					23	14	2	0	0	0	0.30239	1	8163	8163		4.897	0.36815	1	11629000	+		32785	13032	20726	20838	31554	31554					-0.030578557470107626
TASKERDGRY	10	Unmodified	_TASKERDGRY_					0	0	0			REV__ENSG00000170004|ENST00000330494|CHD3	REV__ENSG00000170004|ENST00000330494|CHD3	MSMS	HCT116MG_D190212_S2	2	592.25048828125	2	591.796726	1181.5789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.814	1	22.428	21.928	22.928	-0.3852								0	0	0	0.92272	1	8101	8101		10.824	0	1		+		32786	13275	20727	20839	31555	31555					-0.004627471357935065
TASKMPTIP	9	Unmodified	_TASKMPTIP_					0	0	0			REV__nc|ENSG00000100038|O95985-3|TOP3B	REV__nc|ENSG00000100038|O95985-3|TOP3B	MSMS	HCT116MG_D190212_S3	3	472.7801208496094	2	473.257328	944.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.279	1	28.073	27.573	28.573	-0.20593								0	0	0	0.74436	1	10227	10227		16.942	3.4344	1		+		32787	11061	20728	20840	31556	31556					0.02563309305560324
TASLMSLFYY	10	Unmodified	_TASLMSLFYY_					0	0	0			REV__ENSG00000197674|ENST00000641159|OR51C1P	REV__ENSG00000197674|ENST00000641159|OR51C1P	MULTI-MSMS	HCT116MG_D190212_S3	3	598.2891845703125	2	598.288825	1194.5631	0.58437	0.00034962	0.26924	0.00016108	0.85361	0.0005107	598.2886327426017	28.298	1.1984	28.092	27.603	28.802	-0.20593					42	22	2	0	0	0	0.37629	2	10165	10165;10197		43.858	14.018	1	20779000	+		32788	13556	20729	20841	31557;31558	31557					-0.026401696970651756
TASLMSLFYY	10	Unmodified	_TASLMSLFYY_					0	0	0			REV__ENSG00000197674|ENST00000641159|OR51C1P	REV__ENSG00000197674|ENST00000641159|OR51C1P	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	598.288825	1194.5631	0.58437	0.00034962	0.26924	0.00016108	0.85361	0.0005107	598.2886327426017	28.298	1.1984	28.092	27.603	28.802	-0.20593	-0.040806	0.00090554	NaN	43.858	42	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20779000	+		32789	13556	20729	20841							-0.026401696970651756
TASLMSLFYY	10	Unmodified	_TASLMSLFYY_					0	0	0			REV__ENSG00000197674|ENST00000641159|OR51C1P	REV__ENSG00000197674|ENST00000641159|OR51C1P	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	598.288825	1194.5631	1.1064	0.00066194	-0.56089	-0.00033557	0.5455	0.00032636	598.2883147348704	28.505	1.4547	28.173	27.492	28.947	-0.33138	0.040806	-8.7767E-05	NaN	43.858	57	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17712000	+		32790	13556	20729	20841							-0.026401696970651756
TASLWLGPGIA	11	Unmodified	_TASLWLGPGIA_					0	0	0		nc|ENSG00000211792|A0A0A6YYC5|TRAV14DV4	nc|ENSG00000211792|A0A0A6YYC5|TRAV14DV4	nc|ENSG00000211792|A0A0A6YYC5|TRAV14DV4	MSMS	HCT116MG_D190212_S4	4	543.3010864257812	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.237	1	37.854	37.354	38.354	-0.38283								0	0	0	0.91433	1	14006	14006		18.146	2.2992	1				32791	9627	20730	20842	31559	31559					0.052783159944056024
TASPAETRWTE	11	Unmodified	_TASPAETRWTE_					0	0	0			REV__ENSG00000182871|ENST00000651438|COL18A1;REV__nc|ENSG00000182871|P39060-1|COL18A1	REV__nc|ENSG00000182871|P39060-1|COL18A1	MULTI-SECPEP	HCT116MG_D190212_S3	3	624.236572265625	2	624.796392	1247.57823	0.17201	0.00010747	0.89158	0.00055706	1.0636	0.00066453	624.7976375933521	17.783	0.57235	17.865	17.482	18.054	0.081358					16	10	2	0	0	0	0.36231	1	5863	5863		2.7352	0	1	1452800	+		32792	17239;13732	20731	20843	31560	31560					-0.03565586575496127
TASPGISAPSP	11	Unmodified	_TASPGISAPSP_					0	0	0		GATA3|p.W112Gfs*83|1|0.5|ENSG00000107485|chr10:8058392-8058392|C/-|frameshift_variant	GATA3|p.W112Gfs*83|1|0.5|ENSG00000107485|chr10:8058392-8058392|C/-|frameshift_variant	GATA3|p.W112Gfs*83|1|0.5|ENSG00000107485|chr10:8058392-8058392|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	492.75372314453125	2	492.753464	983.492375	0.34066	0.00016786	0.60099	0.00029614	0.94165	0.000464	492.7537504153701	29.726	0.47515	29.489	29.187	29.662	-0.23655					10	8	2	0	0	0	0.60935	1	10845	10845		34.402	3.7652	1	2148600			32793	9179	20732	20844	31561	31561					-3.126690376120678E-05
TASPPGSPPP	10	Unmodified	_TASPPGSPPP_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MSMS	HCT116MG_D190212_S2	2	453.74322509765625	2	454.229625	906.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.324	1	23.943	23.443	24.443	-0.38003								0	0	0	0.88261	1	8711	8711		18.146	2.2992	1		+		32794	13131	20733	20845	31562	31562					-0.012267808905676247
TASPPVWQQ	9	Unmodified	_TASPPVWQQ_					0	0	0			REV__ENST00000460853.1_1_22:51015219-51015891:-|nuORF	REV__ENST00000460853.1_1_22:51015219-51015891:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	507.25433349609375	2	507.256174	1012.49779	0.37373	0.00018958	-2.6908	-0.0013649	-2.3171	-0.0011753	507.2550319894246	23.619	0.51874	23.236	22.884	23.403	-0.38324					13	9	2	0	0	0	0.47809	1	8458	8458		18.146	0.011366	1	9759800	+		32795	15776	20734	20846	31563	31563					-0.007954031079066226
TASPQPQEVT	10	Unmodified	_TASPQPQEVT_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-SECPEP	HCT116MG_D190212_S4	4	528.4993286132812	2	529.261653	1056.50875	-0.10807	-5.72E-05	0.008268	4.376E-06	-0.099806	-5.2824E-05	529.2613898858114	16.644	0.25612	16.478	16.351	16.608	-0.16664					6	4	2	0	0	0	0.28843	1	5452	5452		18.146	0	1	1014000			32796	5024	20735	20847	31564	31564					-0.01724045524269968
TASPRGDSFYP	11	Unmodified	_TASPRGDSFYP_					0	0	0			REV__ENST00000521620.5_1_8:30945177-30948455:+|nuORF	REV__ENST00000521620.5_1_8:30945177-30948455:+|nuORF	MSMS	HCT116MG_D190212_S4	4	599.28173828125	2	599.280377	1196.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.413	1	23.166	22.666	23.666	-0.24775								0	0	0	0.91433	1	8196	8196		18.146	3.741	1		+		32797	16241	20736	20848	31565	31565					-0.04420954258648635
TASPTEPHHQ	10	Unmodified	_TASPTEPHHQ_					0	0	0		ENSG00000164683|ENST00000354724|HEY1;nc|ENSG00000164683|Q9Y5J3-2|HEY1	ENSG00000164683|ENST00000354724|HEY1	ENSG00000164683|ENST00000354724|HEY1	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2601928710938	2	552.757069	1103.49959	0.37048	0.00020478	0.6366	0.00035188	1.0071	0.00055667	552.7571846455531	18.284	1.0373	18.106	17.632	18.669	-0.17853					28	19	2	0	0	0	0.81464	1	6194	6194		10.8	10.8	1	1655600			32798	4713	20737	20849	31566	31566					-0.04802394089961126
TASRPPEGGDL	11	Unmodified	_TASRPPEGGDL_					0	0	0			REV__PCDH17|p.S283Qfs*6|1|0.18|ENSG00000118946|chr13:57633388-57633389|-/T|frameshift_variant	REV__PCDH17|p.S283Qfs*6|1|0.18|ENSG00000118946|chr13:57633388-57633389|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	366.8499755859375	3	367.184127	1098.53055	-0.11735	-4.3088E-05	0.71264	0.00026167	0.59529	0.00021858	367.1845638313409	24.503	0.31248	24.419	24.237	24.549	-0.083694					7	5	2	0	0	0	0.36524	1	8735	8735		3.8459	0	1	4518600	+		32799	11649	20738	20850	31567	31567					-0.014772407757163819
TASRTEQVKLL	11	Unmodified	_TASRTEQVKLL_					0	0	0		nc|ENSG00000123977|Q8N136-2|DAW1;ENSG00000123977|ENST00000309931|DAW1	nc|ENSG00000123977|Q8N136-2|DAW1	nc|ENSG00000123977|Q8N136-2|DAW1	MULTI-MSMS	HCT116MG_D190212_S1	1	416.2033996582031	3	415.910227	1244.70885	0.07354	3.0586E-05	-0.1364	-5.6731E-05	-0.062861	-2.6144E-05	415.9101305927628	20.39	0.20845	20.39	20.279	20.488	0					5	3	2	0	0	0	0.74191	1	7083	7083		4.4062	1.9714	1	3798500			32800	2821	20739	20851	31568	31568					0.09628429143322137
TASTTSSTPA	10	Unmodified	_TASTTSSTPA_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MSMS	HCT116MG_D190212_S3	3	462.1466064453125	2	462.219454	922.424355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.276	1	22.277	21.777	22.777	0.00074577								0	0	0	0.94339	1	7807	7807		6.2058	0.44535	1		+		32801	14280	20740	20852	31569	31569					-0.03995996341041064
TASVRYQV	8	Unmodified	_TASVRYQV_					0	0	0			REV__ENSG00000113916|ENST00000406870|BCL6	REV__ENSG00000113916|ENST00000406870|BCL6	MSMS	HCT116MG_D190212_S3	3	462.2499084472656	2	462.250892	922.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.565	1	29.328	28.828	29.828	-0.23655								0	0	0	0.65532	1	10745	10745		34.187	5.7005	1		+		32802	11498	20741	20853	31570	31570					0.02288614237670572
TATAAAAAVAA	11	Unmodified	_TATAAAAAVAA_					0	0	0			REV__ENSG00000108175|ENST00000334512|ZMIZ1	REV__ENSG00000108175|ENST00000334512|ZMIZ1	MSMS	HCT116MG_D190212_S3	3	444.7429504394531	2	444.742899	887.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.298	1	26.149	25.649	26.649	-0.14924								0	0	0	0.8787	1	9428	9428		22.736	2.3217	1		+		32803	11338	20742	20854	31571	31571					0.02300908000745494
TATAEVVGSL	10	Unmodified	_TATAEVVGSL_					0	0	0			REV__MUC5AC|p.A594T|1|0.35|ENSG00000215182|chr11:1168936-1168936|G/A|missense_variant	REV__MUC5AC|p.A594T|1|0.35|ENSG00000215182|chr11:1168936-1168936|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	474.255126953125	2	474.25584	946.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.113	1	21.148	20.648	21.648	0.034473								0	0	0	0.83705	1	7341	7341		24.021	0	1		+		32804	17043	20743	20855	31572	31572					0.021737574523854164
TATAPLYMNP	10	Unmodified	_TATAPLYMNP_					0	0	0			REV__ENST00000473607.5_1_3:125854214-125879740:-|nuORF	REV__ENST00000473607.5_1_3:125854214-125879740:-|nuORF	MSMS	HCT116MG_D190212_S3	3	539.7636108398438	2	539.765517	1077.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.085	1	23.045	22.545	23.545	-0.03968								0	0	0	0.92272	1	8133	8133		10.824	0.75	1		+		32805	15892	20744	20856	31573	31573					-0.019176095283455652
TATAVVTRPSP	11	Unmodified	_TATAVVTRPSP_					0	0	0			REV__ENST00000445604.6_1_9:66553265-66553673:-|nuORF	REV__ENST00000445604.6_1_9:66553265-66553673:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	549.8463745117188	2	550.308938	1098.60332	0.57647	0.00031724	0.37132	0.00020434	0.94779	0.00052158	550.3088829972783	24.012	0.5724	23.629	23.351	23.923	-0.38324					13	10	2	0	0	0	0.34294	1	8692	8692		10.8	0	1	4059200	+		32806	14482	20745	20857	31574	31574					0.05796513017708094
TATEARRL	8	Unmodified	_TATEARRL_					0	0	0		ENSG00000165695|ENST00000298545|AK8;ENST00000476719.1_1_9:135601077-135753754:-|nuORF;ENST00000477396.5_1_9:135702810-135749757:-|nuORF	ENSG00000165695|ENST00000298545|AK8	ENSG00000165695|ENST00000298545|AK8	MULTI-MSMS	HCT116MG_D190212_S1	1	459.26177978515625	2	459.261791	916.509028	0.12787	5.8728E-05	0.0064764	2.9744E-06	0.13435	6.1702E-05	459.2615595324538	15.614	0.26034	15.614	15.432	15.692	0					6	4	2	0	0	0	0.78216	1	5209	5209		13.508	0	1	2307400			32807	4793	20746	20858	31575	31575					0.047434189862428866
TATGEQKR	8	Unmodified	_TATGEQKR_					0	0	0			REV__UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant	REV__UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	446.1341552734375	2	445.738148	889.461744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.422	1	10.152	9.6521	10.652	-0.26968								0	0	0	0.8837	1	3295	3295		5.2307	0	1		+		32808	12188	20747	20859	31576	31576					0.012591397152391437
TATGQPWPLDP	11	Unmodified	_TATGQPWPLDP_					0	0	0		nc|ENSG00000149451|Q9BZ11-3|ADAM33;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33	nc|ENSG00000149451|Q9BZ11-3|ADAM33	nc|ENSG00000149451|Q9BZ11-3|ADAM33	MSMS	HCT116MG_D190212_S3	3	591.7908325195312	2	591.793121	1181.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.647	1	18.717	18.217	19.217	0.069159								0	0	0	0.74961	1	6346	6346		36.506	5.2379	1				32809	4062	20748	20860	31577	31577					-0.011834797362325844
TATGTVIV	8	Unmodified	_TATGTVIV_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	381.22357177734375	2	381.223811	760.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.808	1	29.459	28.959	29.959	-0.34921								0	0	0	0.8837	1	10780	10780		14.582	4.3983	1				32810	1439	20749	20861	31578	31578					0.043270220860904374
TATLSGLTGT	10	Unmodified	_TATLSGLTGT_					0	0	0			REV__ENST00000329117.9_1_1:156626175-156628460:+|nuORF	REV__ENST00000329117.9_1_1:156626175-156628460:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	461.2481384277344	2	461.248015	920.481476	0.54331	0.0002506	0.14486	6.6816E-05	0.68817	0.00031742	461.24784225371127	29.521	0.31297	29.285	29.135	29.448	-0.23655					7	5	2	0	0	0	0.56527	1	10757	10757		30.637	0	1	2414400	+		32811	14920	20750	20862	31579	31579					0.01805470935357789
TATNPIDESH	10	Unmodified	_TATNPIDESH_					0	0	0			REV__nc|ENSG00000002726|P19801-2|AOC1	REV__nc|ENSG00000002726|P19801-2|AOC1	MULTI-MSMS	HCT116MG_D190212_S3	3	543.2509155273438	2	542.74891	1083.48327	0.42019	0.00022806	-0.40583	-0.00022027	0.014357	7.7922E-06	542.7485702142784	15.747	0.62457	15.832	15.56	16.185	0.085424					15	11	2	0	0	0	0.77749	1	5154	5154		13.906	0.86358	1	1283500	+		32812	10463	20751	20863	31580	31580					-0.055135200467020695
TATNPIDESH	10	Unmodified	_TATNPIDESH_					0	0	0			REV__nc|ENSG00000002726|P19801-2|AOC1	REV__nc|ENSG00000002726|P19801-2|AOC1	MULTI-SECPEP	HCT116MG_D190212_S3	3	543.2509155273438	2	542.74891	1083.48327	0.42019	0.00022806	-0.40583	-0.00022027	0.014357	7.7922E-06	542.7485702142784	15.747	0.62457	15.832	15.56	16.185	0.085424					15	11	2	0	0	0	0.30738	1	5154	5154		13.906	8.1742	1	1283500	+		32813	10463	20751	20863	31581	31581					-0.055135200467020695
TATPCVLLPP	10	Unmodified	_TATPCVLLPP_					0	0	0			REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MSMS	HCT116MG_D190212_S3	3	506.2821350097656	2	506.280803	1010.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.594	1	26.445	25.945	26.945	-0.14924								0	0	0	0.81484	1	9547	9547		26.884	6.43	1		+		32814	10866	20752	20864	31582	31582					0.04220168856670625
TATPLWLPS	9	Unmodified	_TATPLWLPS_					0	0	0			REV__ENST00000272647.9_1_2:128631419-128631482:-|nuORF	REV__ENST00000272647.9_1_2:128631419-128631482:-|nuORF	MSMS	HCT116MG_D190212_S3	3	493.26971435546875	2	493.271293	984.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.631	1	29.394	28.894	29.894	-0.23655								0	0	0	0.3894	1	10772	10772		34.102	8.7031	1		+		32815	14701	20753	20865	31583	31583					0.035149555572729696
TATSTSWVQVI	11	Unmodified	_TATSTSWVQVI_					0	0	0		ENST00000497292.1_1_20:46255748-46257319:+|nuORF	ENST00000497292.1_1_20:46255748-46257319:+|nuORF	ENST00000497292.1_1_20:46255748-46257319:+|nuORF	MSMS	HCT116MG_D190212_S2	2	596.816162109375	2	596.814053	1191.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.381	1	16.039	15.539	16.539	-0.34183								0	0	0	0.95196	1	5508	5508		5.2969	0	1				32816	8399	20754	20866	31584	31584					0.025410759522856097
TATTGHEPAEA	11	Unmodified	_TATTGHEPAEA_					0	0	0			REV__ENSG00000169174|ENST00000302118|PCSK9	REV__ENSG00000169174|ENST00000302118|PCSK9	MULTI-MSMS	HCT116MG_D190212_S3	3	542.7490234375	2	542.74891	1083.48327	0.42019	0.00022806	-0.40583	-0.00022027	0.014357	7.7922E-06	542.7485702142784	15.747	0.62457	15.832	15.56	16.185	0.085424					15	11	2	0	0	0	0.62391	1	5188	5188		32.786	6.5175	1	1283500	+		32817	13226	20755	20867	31585	31585					-0.05513520046724807
TAVDQHLGPGA	11	Unmodified	_TAVDQHLGPGA_					0	0	0		nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	MULTI-SECPEP	HCT116MG_D190212_S4	4	533.1913452148438	2	533.269813	1064.52507	0.41215	0.00021979	0.27519	0.00014675	0.68734	0.00036654	533.7714437660138	28.265	0.26022	27.934	27.752	28.012	-0.33138					6	4	2	0	0	0	0.36183	1	10145	10145		5.7319	2.1354	1	2368100			32818	3193	20756	20868	31586	31586					-0.00460919567512974
TAVEAEKD	8	Unmodified	_TAVEAEKD_					0	0	0		KANK1|p.A1206T|1|0.3|ENSG00000107104|chr9:740854-740854|G/A|missense_variant	KANK1|p.A1206T|1|0.3|ENSG00000107104|chr9:740854-740854|G/A|missense_variant	KANK1|p.A1206T|1|0.3|ENSG00000107104|chr9:740854-740854|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	863.3438720703125	1	862.415253	861.407977	0.70494	0.00060795	0.50846	0.0004385	1.2134	0.0010464	862.4155091394306	22.523	0.20843	22.505	22.387	22.595	-0.018869					6	3	2	0	0	0	0.69862	1	7941	7941		23.148	0	1	3728500			32819	9253	20757	20869	31587	31587					-0.028270775071405296
TAVEAVLQQP	10	Unmodified	_TAVEAVLQQP_					0	0	0			REV__IGSF10|p.K1527Rfs*29|1|0.18|ENSG00000152580|chr3:151445403-151445403|G/-|frameshift_variant	REV__IGSF10|p.K1527Rfs*29|1|0.18|ENSG00000152580|chr3:151445403-151445403|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	528.2896118164062	2	528.290214	1054.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.809	1	17.453	16.953	17.953	-0.35647								0	0	0	0.90475	1	6084	6084		14.838	2.3067	1		+		32820	12632	20758	20870	31588	31588					0.040774217520947786
TAVEGKYPA	9	Unmodified	_TAVEGKYPA_					0	0	0			REV__ENSG00000147647|ENST00000351513|DPYS	REV__ENSG00000147647|ENST00000351513|DPYS	MSMS	HCT116MG_D190212_S4	4	468.2430419921875	2	468.245275	934.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.292	1	27.96	27.46	28.46	-0.33138								0	0	0	0.74436	1	10167	10167		16.942	0	1		+		32821	12521	20759	20871	31589	31589					0.006137921435083626
TAVGSTVAAA	10	Unmodified	_TAVGSTVAAA_					0	0	0			REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-MSMS	HCT116MG_D190212_S4	4	424.2294921875	2	424.229625	846.444697	0.19539	8.2888E-05	-0.25963	-0.00011014	-0.064242	-2.7253E-05	424.22945237272717	20.476	0.31206	20.274	20.144	20.456	-0.20133					7	5	2	0	0	0	0.34998	1	7036	7036		46.021	0.32134	1	4952000	+		32822	14377	20760	20872	31590	31590					0.01533219109410311
TAVKEGLQY	9	Unmodified	_TAVKEGLQY_					0	0	0			REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	REV__tr|U7T4T7|U7T4T7_FUSNU1-deoxy-D-xylulose-5-phosphatesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00548PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	505.7610778808594	2	504.771657	1007.52876	0.42389	0.00021397	-0.044291	-2.2357E-05	0.3796	0.00019161	504.77158826913717	25.023	0.36493	24.917	24.735	25.1	-0.10618					18	6	4	0	0	0	0.51829	1	8867	8867		15.847	1.0089	1	49628000	+		32823	17971	20761	20873	31591	31591					0.02529750206326753
TAVLEFTTEP	10	Unmodified	_TAVLEFTTEP_					0	0	0		ACAN|p.I729V|1|0.14|ENSG00000157766|chr15:88851952-88851952|A/G|missense_variant	ACAN|p.I729V|1|0.14|ENSG00000157766|chr15:88851952-88851952|A/G|missense_variant	ACAN|p.I729V|1|0.14|ENSG00000157766|chr15:88851952-88851952|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	554.2803344726562	2	554.282054	1106.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.086	1	30.825	30.325	31.325	-0.26071								0	0	0	0.87399	1	11344	11344		19.257	1.1106	1				32824	20	20762	20874	31592	31592					0.0005429579534848017
TAVPAAVL	8	Unmodified	_TAVPAAVL_					0	0	0		LINGO3|p.A265V|1|0.44|ENSG00000220008|chr19:2290983-2290983|G/A|missense_variant	REV__FKRP|p.A381Qfs*47|1|0.22|ENSG00000181027|chr19:46756586-46756586|G/-|frameshift_variant	REV__FKRP|p.A381Qfs*47|1|0.22|ENSG00000181027|chr19:46756586-46756586|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	371.2271728515625	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.125	1	35.825	35.325	36.325	-0.30042								0	0	0	0.8837	1	13337	13337		2.5775	0	1				32825	16824	20763	20875	31593	31593					0.06263629811314786
TAVPRPWPQ	9	Unmodified	_TAVPRPWPQ_					0	0	0		ENST00000602243.5_1_19:39847430-39847586:+|nuORF	ENST00000602243.5_1_19:39847430-39847586:+|nuORF	ENST00000602243.5_1_19:39847430-39847586:+|nuORF	MSMS	HCT116MG_D190212_S4	4	526.2867431640625	2	526.287808	1050.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.792	1	30.428	29.928	30.928	-0.36416								0	0	0	0.74436	1	11149	11149		16.942	1.0951	1				32826	9095	20764	20876	31594	31594					0.03780582399986088
TAVPVPLL	8	Unmodified	_TAVPVPLL_					0	0	0		ENST00000489826.1_1_3:49847513-49847846:-|nuORF	ENST00000489826.1_1_3:49847513-49847846:-|nuORF	ENST00000489826.1_1_3:49847513-49847846:-|nuORF	MSMS	HCT116MG_D190212_S2	2	405.2593688964844	2	405.260197	808.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.327	1	16.978	16.478	17.478	-0.34933								0	0	0	0.8837	1	5890	5890		5.7604	0	1				32827	8330	20765	20877	31595	31595					0.09392775879518922
TAVTQLTVVP	10	Unmodified	_TAVTQLTVVP_					0	0	0		nc|ENSG00000116809|Q13105-3|ZBTB17;ENSG00000116809|ENST00000375743|ZBTB17	nc|ENSG00000116809|Q13105-3|ZBTB17	nc|ENSG00000116809|Q13105-3|ZBTB17	MULTI-MSMS	HCT116MG_D190212_S3	3	514.8024291992188	2	514.802957	1027.59136	0.32945	0.0001696	-0.45816	-0.00023586	-0.1287	-6.6257E-05	514.8027099964079	30.12	0.31584	29.871	29.65	29.965	-0.24946					8	5	2	0	0	0	0.37629	1	10989	10989		43.858	3.9086	1	2834800			32828	2541	20766	20878	31596	31596					0.0786689627452688
TAVVEPYNS	9	Unmodified	_TAVVEPYNS_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000167552|Q71U36-2|TUBA1A;TUBA3D|p.G366Efs*13|1|0.17|ENSG00000075886|chr2:131482588-131482588|G/-|frameshift_variant;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;nc|ENSG00000183785|Q9NY65-2|TUBA8;TUBA3D|p.V328Pfs*54|1|0.45|ENSG00000075886|chr2:131480665-131480666|-/CCCAAAGA|frameshift_variant;TUBA3C|p.T361Rfs*18|1|0.17|ENSG00000198033|chr13:19174136-19174136|G/-|frameshift_variant;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000178462|ENST00000380419|TUBAL3;nc|ENSG00000178462|A6NHL2-2|TUBAL3;TUBA1A|p.L189I|1|0.12|ENSG00000167552|chr12:49185801-49185801|G/T|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	HCT116MG_D190212_S4	4	490.2403869628906	2	490.24019	978.465826	0.043755	2.1451E-05	0.1402	6.8733E-05	0.18396	9.0184E-05	490.24024872314067	42.393	0.81121	42.017	41.442	42.254	-0.37565					26	15	3	0	0	0	0.65706	1	15423	15423		7.9102	0	1	7918200			32829	1325	20767	20879	31597	31597					-0.024268155817139814
TAWATPCPRR	10	Unmodified	_TAWATPCPRR_					0	0	0			REV__ENST00000550444.1_3_12:104458664-104458877:+|nuORF	REV__ENST00000550444.1_3_12:104458664-104458877:+|nuORF	MSMS	HCT116MG_D190212_S3	3	386.8668518066406	3	386.866075	1157.5764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.437	1	18.513	18.013	19.013	0.076334								0	0	0	0.91279	1	6261	6261		7.9454	0	1		+		32830	16422	20768	20880	31598	31598					0.003911259255119148
TAWYTSPSAP	10	Unmodified	_TAWYTSPSAP_					0	0	0			REV__nc|ENSG00000005379|O95153-3|TSPOAP1	REV__nc|ENSG00000005379|O95153-3|TSPOAP1	MSMS	HCT116MG_D190212_S2	2	540.75244140625	2	540.753464	1079.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.867	1	21.482	20.982	21.982	-0.38503								0	0	0	0.90023	1	7718	7718		15.847	1.0089	1		+		32831	10474	20769	20881	31599	31599					-0.044191266903681026
TAYAVDRGVP	10	Unmodified	_TAYAVDRGVP_					0	0	0		CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant;ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant;CELSR3|p.S1935Afs*4|1|0.38|ENSG00000008300|chr3:48651998-48651998|G/-|frameshift_variant	CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant	CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	524.0599365234375	2	524.774731	1047.53491	0.37363	0.00019607	-0.25069	-0.00013155	0.12294	6.4518E-05	524.7746010150073	33.741	0.41508	33.451	33.252	33.667	-0.29013					13	7	2	0	0	0	0.24623	1	12363	12363		36.127	3.8215	1	6159800			32832	398	20770	20882	31600	31600					0.013042684378660852
TAYEWVNP	8	Unmodified	_TAYEWVNP_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MSMS	HCT116MG_D190212_S4	4	490.2286071777344	2	490.229625	978.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.743	1	30.379	29.879	30.879	-0.36416								0	0	0	0.8396	1	11129	11129		19.439	2.4967	1				32833	1575	20771	20883	31601	31601					-0.0453878089057298
TAYPNSDKSQR	11	Unmodified	_TAYPNSDKSQR_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-4|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-4|CCDC88A	MSMS	HCT116MG_D190212_S4	4	633.8076171875	2	633.807291	1265.60003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.19	1	25.899	25.399	26.399	-0.29022								0	0	0	0.93295	1	9318	9318		15.248	7.093	1		+		32834	11539	20772	20884	31602	31602					-0.02214781826955914
TCCYCCCCLC	10	Unmodified	_TCCYCCCCLC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	HCT116MG_D190212_S2	2	372.8594055175781	3	373.097252	1116.26993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.021	1	17.664	17.164	18.164	-0.35647								0	0	0	0.97116	1	6169	6169		0	0	1				32835	1754	20773	20885	31603	31603					-0.2835571427310697
TCCYCCCCLC	10	Unmodified	_TCCYCCCCLC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	HCT116MG_D190212_S3	3	373.2596130371094	3	373.097252	1116.26993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.358	1	58.088	57.588	58.588	-0.26932								0	0	0	0.97045	1	22198	22198		0.15932	0.15932	1				32836	1754	20773	20885	31604	31604					-0.2835571427310697
TCCYCCCCLC	10	Unmodified	_TCCYCCCCLC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	HCT116MG_D190212_S4	4	373.0805969238281	3	373.097252	1116.26993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.966	1	32.583	32.083	33.083	-0.38223								0	0	0	0.97116	1	12028	12028		0	0	1				32837	1754	20773	20885	31605	31605					-0.2835571427310697
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1103820800781	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.10715	1	0.10715	-0.39285	0.60715	0								0	0	0	0.8837	1	43	43		0	0	1		+		32838	13009	20774	20886	31606	31606					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1101989746094	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2365	1	2.2365	1.7365	2.7365	0								0	0	0	0.8837	1	675	675		0	0	1		+		32839	13009	20774	20886	31607	31607					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1102600097656	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7843	1	2.7843	2.2843	3.2843	0								0	0	0	0.8837	1	838	838		0	0	1		+		32840	13009	20774	20886	31608	31608					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1105651855469	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2886	1	3.2886	2.7886	3.7886	0								0	0	0	0.8837	1	992	992		0	0	1		+		32841	13009	20774	20886	31609	31609					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1105651855469	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3158	1	4.3158	3.8158	4.8158	0								0	0	0	0.8837	1	1299	1299		0	0	1		+		32842	13009	20774	20886	31610	31610					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1107177734375	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8641	1	4.8641	4.3641	5.3641	0								0	0	0	0.8837	1	1467	1467		0	0	1		+		32843	13009	20774	20886	31611	31611					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1101379394531	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3785	1	5.3785	4.8785	5.8785	0								0	0	0	0.8837	1	1622	1622		0	0	1		+		32844	13009	20774	20886	31612	31612					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1102600097656	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4288	1	6.4288	5.9288	6.9288	0								0	0	0	0.8837	1	1938	1938		0	0	1		+		32845	13009	20774	20886	31613	31613					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1106872558594	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9632	1	6.9632	6.4632	7.4632	0								0	0	0	0.8837	1	2103	2103		0	0	1		+		32846	13009	20774	20886	31614	31614					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S1	1	409.1105651855469	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0535	1	9.0535	8.5535	9.5535	0								0	0	0	0.8837	1	2740	2740		0	0	1		+		32847	13009	20774	20886	31615	31615					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.1103515625	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2148	1	1.2085	0.70852	1.7085	-0.0062599								0	0	0	0.8837	1	396	396		0	0	1		+		32848	13009	20774	20886	31616	31616					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.1105041503906	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7519	1	1.7387	1.2387	2.2387	-0.013221								0	0	0	0.8837	1	570	570		0	0	1		+		32849	13009	20774	20886	31617	31617					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.1106262207031	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.803	1	2.7626	2.2626	3.2626	-0.040353								0	0	0	0.8837	1	899	899		0	0	1		+		32850	13009	20774	20886	31618	31618					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.1104431152344	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3816	1	5.2335	4.7335	5.7335	-0.14816								0	0	0	0.8837	1	1702	1702		0	0	1		+		32851	13009	20774	20886	31619	31619					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.1105651855469	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9842	1	7.7531	7.2531	8.2531	-0.23116								0	0	0	0.8837	1	2502	2502		0	0	1		+		32852	13009	20774	20886	31620	31620					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.11065673828125	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5774	1	8.3334	7.8334	8.8334	-0.24401								0	0	0	0.8837	1	2683	2683		0	0	1		+		32853	13009	20774	20886	31621	31621					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.11029052734375	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0872	1	8.8432	8.3432	9.3432	-0.24401								0	0	0	0.8837	1	2842	2842		0	0	1		+		32854	13009	20774	20886	31622	31622					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.1104431152344	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6144	1	9.3593	8.8593	9.8593	-0.25508								0	0	0	0.8837	1	3010	3010		0	0	1		+		32855	13009	20774	20886	31623	31623					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.1107482910156	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.254	1	10.972	10.472	11.472	-0.28186								0	0	0	0.8837	1	3615	3615		0	0	1		+		32856	13009	20774	20886	31624	31624					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S2	2	409.1102600097656	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.844	1	12.547	12.047	13.047	-0.29721								0	0	0	0.8837	1	4199	4199		0	0	1		+		32857	13009	20774	20886	31625	31625					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.11053466796875	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2252	1	1.2861	0.78615	1.7861	0.060905								0	0	0	0.8837	1	388	388		0	0	1		+		32858	13009	20774	20886	31626	31626					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.11053466796875	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8076	1	1.8685	1.3685	2.3685	0.060905								0	0	0	0.8837	1	561	561		0.79363	0	1		+		32859	13009	20774	20886	31627	31627					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.11077880859375	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3721	1	4.4008	3.9008	4.9008	0.028732								0	0	0	0.8837	1	1324	1324		0	0	1		+		32860	13009	20774	20886	31628	31628					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.11065673828125	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4722	1	5.4897	4.9897	5.9897	0.017489								0	0	0	0.8837	1	1655	1655		0	0	1		+		32861	13009	20774	20886	31629	31629					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.110107421875	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.0491	1	6.0635	5.5635	6.5635	0.01438								0	0	0	0.8837	1	1828	1828		0	0	1		+		32862	13009	20774	20886	31630	31630					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.11041259765625	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0633	1	7.0772	6.5772	7.5772	0.013901								0	0	0	0.8837	1	2131	2131		0	0	1		+		32863	13009	20774	20886	31631	31631					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.1105041503906	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3588	1	8.3753	7.8753	8.8753	0.016533								0	0	0	0.8837	1	2527	2527		0	0	1		+		32864	13009	20774	20886	31632	31632					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.11053466796875	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0317	1	9.0578	8.5578	9.5578	0.026101								0	0	0	0.8837	1	2731	2731		0.79363	0	1		+		32865	13009	20774	20886	31633	31633					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.110595703125	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.057	1	10.09	9.5899	10.59	0.032559								0	0	0	0.8837	1	3042	3042		0	0	1		+		32866	13009	20774	20886	31634	31634					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.1105041503906	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.421	1	12.484	11.984	12.984	0.06246								0	0	0	0.8837	1	3872	3872		0	0	1		+		32867	13009	20774	20886	31635	31635					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S3	3	409.11065673828125	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.542	1	63.327	62.827	63.827	-0.21454								0	0	0	0.8837	1	24242	24242		0	0	1		+		32868	13009	20774	20886	31636	31636					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.1106872558594	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.65654	1	0.39198	-0.10802	0.89198	-0.26456								0	0	0	0.8837	1	212	212		0	0	1		+		32869	13009	20774	20886	31637	31637					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.1104736328125	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7053	1	1.4407	0.94073	1.9407	-0.26456								0	0	0	0.8837	1	523	523		0	0	1		+		32870	13009	20774	20886	31638	31638					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	408.9330139160156	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3459	1	2.0814	1.5814	2.5814	-0.26456								0	0	0	0.8837	1	719	719		0	0	1		+		32871	13009	20774	20886	31639	31639					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.11077880859375	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7643	1	2.4997	1.9997	2.9997	-0.26456								0	0	0	0.8837	1	849	849		0	0	1		+		32872	13009	20774	20886	31640	31640					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.11016845703125	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3808	1	4.1163	3.6163	4.6163	-0.26456								0	0	0	0.8837	1	1347	1347		0	0	1		+		32873	13009	20774	20886	31641	31641					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.1101989746094	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.471	1	5.2068	4.7068	5.7068	-0.26414								0	0	0	0.8837	1	1671	1671		0	0	1		+		32874	13009	20774	20886	31642	31642					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.110595703125	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.99	1	5.7285	5.2285	6.2285	-0.26151								0	0	0	0.8837	1	1830	1830		0	0	1		+		32875	13009	20774	20886	31643	31643					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.1105651855469	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.532	1	6.2751	5.7751	6.7751	-0.25684								0	0	0	0.8837	1	1999	1999		0	0	1		+		32876	13009	20774	20886	31644	31644					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.11065673828125	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5958	1	8.3751	7.8751	8.8751	-0.22071								0	0	0	0.8837	1	2625	2625		0	0	1		+		32877	13009	20774	20886	31645	31645					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.1104431152344	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7014	1	9.4917	8.9917	9.9917	-0.20971								0	0	0	0.8837	1	2972	2972		0	0	1		+		32878	13009	20774	20886	31646	31646					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.42681884765625	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.147	1	12.982	12.482	13.482	-0.16496								0	0	0	0.8837	1	4112	4112		0	0	1		+		32879	13009	20774	20886	31647	31647					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.1104431152344	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.921	1	13.759	13.259	14.259	-0.16233								0	0	0	0.8837	1	4387	4387		0	0	1		+		32880	13009	20774	20886	31648	31648					-0.20663120393362533
TCGESDCC	8	Unmodified	_TCGESDCC_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MSMS	HCT116MG_D190212_S4	4	409.1106262207031	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.549	1	64.315	63.815	64.815	-0.23412								0	0	0	0.8837	1	24285	24285		0	0	1		+		32881	13009	20774	20886	31649	31649					-0.20663120393362533
TCLCEEGY	8	Unmodified	_TCLCEEGY_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MSMS	HCT116MG_D190212_S1	1	459.1723327636719	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9584	1	6.9584	6.4584	7.4584	0								0	0	0	0.8837	1	2101	2101		0.79363	0	1				32882	2504	20775	20887	31650	31650					-0.1308575503933298
TCLCEEGY	8	Unmodified	_TCLCEEGY_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MSMS	HCT116MG_D190212_S2	2	459.17193603515625	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.4376	1	4.3486	3.8486	4.8486	-0.089082								0	0	0	0.8837	1	1403	1403		0.79363	0	1				32883	2504	20775	20887	31651	31651					-0.1308575503933298
TCLCEEGY	8	Unmodified	_TCLCEEGY_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MSMS	HCT116MG_D190212_S2	2	459.17230224609375	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0956	1	7.8644	7.3644	8.3644	-0.23116								0	0	0	0.8837	1	2533	2533		0.79363	0	1				32884	2504	20775	20887	31652	31652					-0.1308575503933298
TCLCEEGY	8	Unmodified	_TCLCEEGY_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MSMS	HCT116MG_D190212_S4	4	459.1720886230469	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8905	1	9.6912	9.1912	10.191	-0.1993								0	0	0	0.8837	1	3031	3031		0.79363	0	1				32885	2504	20775	20887	31653	31653					-0.1308575503933298
TDAETLVKKKE	11	Unmodified	_TDAETLVKKKE_					0	0	0			REV__EFCAB5|p.F843Lfs*13|1|0.49|ENSG00000176927|chr17:30057834-30057834|T/-|frameshift_variant	REV__EFCAB5|p.F843Lfs*13|1|0.49|ENSG00000176927|chr17:30057834-30057834|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	631.3538208007812	2	631.353542	1260.69253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.668	1	41.291	40.791	41.791	-0.37637								0	0	0	0.95686	1	15290	15290		2.7352	0	1		+		32886	10440	20776	20888	31654	31654					0.07261303186555779
TDAFKSKV	8	Unmodified	_TDAFKSKV_					0	0	0		ENST00000474664.5_1_4:100844167-100867674:-|nuORF	ENST00000474664.5_1_4:100844167-100867674:-|nuORF	ENST00000474664.5_1_4:100844167-100867674:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	448.2478332519531	2	448.247818	894.481082	0.11443	5.1295E-05	0.36956	0.00016566	0.484	0.00021695	448.24770981873104	26.411	0.31092	26.05	25.921	26.232	-0.36164					11	5	3	0	0	0	0.27593	1	9576	9576		61.357	9.0891	1	41900000			32887	8191	20777	20889	31655	31655					0.02962096006149295
TDAFKSKV	8	Unmodified	_TDAFKSKV_					0	0	0		ENST00000474664.5_1_4:100844167-100867674:-|nuORF	ENST00000474664.5_1_4:100844167-100867674:-|nuORF	ENST00000474664.5_1_4:100844167-100867674:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	448.24798583984375	2	448.247818	894.481082	0.2128	9.5385E-05	0.015717	7.0449E-06	0.22851	0.00010243	448.2476625250758	25.961	0.26086	25.833	25.65	25.911	-0.12795					7	4	2	0	0	0	0.46892	1	9298	9298		43.858	5.8843	1	5901200			32888	8191	20777	20889	31656	31656					0.02962096006149295
TDAQRSGP	8	Unmodified	_TDAQRSGP_					0	0	0		ENSG00000183828|ENST00000392568|NUDT14	ENSG00000183828|ENST00000392568|NUDT14	ENSG00000183828|ENST00000392568|NUDT14	MSMS	HCT116MG_D190212_S2	2	416.20318603515625	2	416.201399	830.388245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.889	1	20.506	20.006	21.006	-0.38288								0	0	0	0.87079	1	7323	7323		16.942	3.4344	1				32889	5743	20778	20890	31657	31657					-0.03373408727225069
TDAVEARSLG	10	Unmodified	_TDAVEARSLG_					0	0	0		FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant;ENSG00000140564|ENST00000268171|FURIN	FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant	FURIN|p.C644Afs*13|1|0.32|ENSG00000140564|chr15:90881418-90881418|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	509.774658203125	2	509.76182	1017.50909	0.25117	0.00012804	0.79783	0.00040671	1.049	0.00053474	509.7621873757454	27.165	0.20808	26.853	26.69	26.899	-0.3114					5	3	2	0	0	0	0.2568	1	9726	9726		39.95	5.548	1	1686500			32890	3677	20779	20891	31658	31658					0.0010337419556663008
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S1	1	463.1307067871094	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2281	1	1.2281	0.72808	1.7281	0								0	0	0	0.8837	1	375	375		0	0	1				32891	2099	20780	20892	31659	31659					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S1	1	463.13079833984375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7534	1	1.7534	1.2534	2.2534	0								0	0	0	0.8837	1	530	530		0	0	1				32892	2099	20780	20892	31660	31660					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S1	1	463.1305847167969	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8453	1	4.8453	4.3453	5.3453	0								0	0	0	0.8837	1	1460	1460		0	0	1				32893	2099	20780	20892	31661	31661					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S1	1	463.1307373046875	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8669	1	5.8669	5.3669	6.3669	0								0	0	0	0.8837	1	1768	1768		0	0	1				32894	2099	20780	20892	31662	31662					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S1	1	463.130859375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3752	1	6.3752	5.8752	6.8752	0								0	0	0	0.8837	1	1921	1921		0	0	1				32895	2099	20780	20892	31663	31663					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S1	1	463.1308898925781	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8889	1	6.8889	6.3889	7.3889	0								0	0	0	0.8837	1	2081	2081		0	0	1				32896	2099	20780	20892	31664	31664					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S1	1	463.130859375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9546	1	8.9546	8.4546	9.4546	0								0	0	0	0.8837	1	2709	2709		0	0	1				32897	2099	20780	20892	31665	31665					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S1	1	463.1306457519531	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.507	1	9.507	9.007	10.007	0								0	0	0	0.8837	1	2882	2882		0	0	1				32898	2099	20780	20892	31666	31666					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	462.9785461425781	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.47379	1	0.46985	-0.030145	0.96985	-0.0039395								0	0	0	0.8837	1	154	154		0	0	1				32899	2099	20780	20892	31667	31667					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.1304016113281	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7354	1	1.7221	1.2221	2.2221	-0.013221								0	0	0	0.8837	1	564	564		0	0	1				32900	2099	20780	20892	31668	31668					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.1305847167969	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3692	1	3.3071	2.8071	3.8071	-0.062129								0	0	0	0.8837	1	1075	1075		0	0	1				32901	2099	20780	20892	31669	31669					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.1307373046875	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3994	1	4.3103	3.8103	4.8103	-0.089082								0	0	0	0.8837	1	1394	1394		0	0	1				32902	2099	20780	20892	31670	31670					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.1307678222656	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.932	1	4.8133	4.3133	5.3133	-0.11871								0	0	0	0.8837	1	1562	1562		0	0	1				32903	2099	20780	20892	31671	31671					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.13067626953125	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4356	1	5.2874	4.7874	5.7874	-0.14816								0	0	0	0.8837	1	1718	1718		0	0	1				32904	2099	20780	20892	31672	31672					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.1307373046875	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0863	1	7.8551	7.3551	8.3551	-0.23116								0	0	0	0.8837	1	2530	2530		0	0	1				32905	2099	20780	20892	31673	31673					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.1308288574219	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.141	1	9.8761	9.3761	10.376	-0.26472								0	0	0	0.8837	1	3194	3194		0	0	1				32906	2099	20780	20892	31674	31674					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.1307678222656	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.211	1	10.929	10.429	11.429	-0.28186								0	0	0	0.8837	1	3599	3599		0	0	1				32907	2099	20780	20892	31675	31675					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.1307067871094	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.307	1	13.003	12.503	13.503	-0.30453								0	0	0	0.8837	1	4353	4353		0	0	1				32908	2099	20780	20892	31676	31676					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S2	2	463.130859375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.818	1	13.506	13.006	14.006	-0.31202								0	0	0	0.8837	1	4519	4519		0	0	1				32909	2099	20780	20892	31677	31677					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.1306457519531	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.13081	1	0.19171	-0.30829	0.69171	0.060905								0	0	0	0.8837	1	52	52		0	0	1				32910	2099	20780	20892	31678	31678					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.1306457519531	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.68173	1	0.74263	0.24263	1.2426	0.060905								0	0	0	0.8837	1	222	222		0	0	1				32911	2099	20780	20892	31679	31679					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.130859375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7696	1	2.8149	2.3149	3.3149	0.045237								0	0	0	0.8837	1	845	845		0	0	1				32912	2099	20780	20892	31680	31680					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.13067626953125	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8466	1	4.8691	4.3691	5.3691	0.022513								0	0	0	0.8837	1	1461	1461		0	0	1				32913	2099	20780	20892	31681	31681					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.1308898925781	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8834	1	6.8973	6.3973	7.3973	0.013901								0	0	0	0.8837	1	2084	2084		0	0	1				32914	2099	20780	20892	31682	31682					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.130859375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0716	1	7.0855	6.5855	7.5855	0.013901								0	0	0	0.8837	1	2133	2133		0	0	1				32915	2099	20780	20892	31683	31683					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.131103515625	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9277	1	7.9442	7.4442	8.4442	0.016533								0	0	0	0.8837	1	2399	2399		0	0	1				32916	2099	20780	20892	31684	31684					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.1308288574219	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4324	1	8.453	7.953	8.953	0.020599								0	0	0	0.8837	1	2550	2550		0	0	1				32917	2099	20780	20892	31685	31685					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.1309814453125	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.545	1	11.593	11.093	12.093	0.04739								0	0	0	0.8837	1	3549	3549		0	0	1				32918	2099	20780	20892	31686	31686					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.1308288574219	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.25	1	63.036	62.536	63.536	-0.21454								0	0	0	0.8837	1	24152	24152		0	0	1				32919	2099	20780	20892	31687	31687					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S3	3	463.1307678222656	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.072	1	63.867	63.367	64.367	-0.20569								0	0	0	0.8837	1	24402	24402		0	0	1				32920	2099	20780	20892	31688	31688					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S4	4	463.13067626953125	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3689	1	4.1043	3.6043	4.6043	-0.26456								0	0	0	0.8837	1	1342	1342		0	0	1				32921	2099	20780	20892	31689	31689					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S4	4	463.13067626953125	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2729	1	5.0087	4.5087	5.5087	-0.26414								0	0	0	0.8837	1	1613	1613		0	0	1				32922	2099	20780	20892	31690	31690					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S4	4	463.1308288574219	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.681	1	12.512	12.012	13.012	-0.16903								0	0	0	0.8837	1	3947	3947		0	0	1				32923	2099	20780	20892	31691	31691					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S4	4	463.130615234375	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.585	1	62.336	61.836	62.836	-0.24919								0	0	0	0.8837	1	23633	23633		0	0	1				32924	2099	20780	20892	31692	31692					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S4	4	463.1307678222656	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.088	1	62.844	62.344	63.344	-0.24392								0	0	0	0.8837	1	23815	23815		0	0	1				32925	2099	20780	20892	31693	31693					-0.2183091640170005
TDDDDDDD	8	Unmodified	_TDDDDDDD_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MSMS	HCT116MG_D190212_S4	4	463.1308288574219	2	463.130699	924.246844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.132	1	63.897	63.397	64.397	-0.23411								0	0	0	0.8837	1	24151	24151		0	0	1				32926	2099	20780	20892	31694	31694					-0.2183091640170005
TDDDFWGP	8	Unmodified	_TDDDFWGP_					0	0	0		ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	477.7353515625	2	476.68779	951.361027	-0.061263	-2.9203E-05	0.2259	0.00010768	0.16464	7.8481E-05	476.687802610943	17.412	1.3009	17.493	17.169	18.47	0.081358					53	24	3	0	0	0	0.77285	1	5907	5907		14.582	5.9884	1	15859000			32927	1565	20781	20893	31695	31695					-0.11659937058277592
TDDIVKHLGHI	11	Unmodified	_TDDIVKHLGHI_					0	0	0			REV__KRT18|p.R186H|1|0.38|ENSG00000111057|chr12:52950806-52950806|G/A|missense_variant	REV__KRT18|p.R186H|1|0.38|ENSG00000111057|chr12:52950806-52950806|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	624.340087890625	2	624.340769	1246.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.91	1	23.91	23.41	24.41	0								0	0	0	0.94538	1	8537	8537		8.7454	0.58988	1		+		32928	16288	20782	20894	31696	31696					0.05351873454787892
TDDRVERVRRI	11	Unmodified	_TDDRVERVRRI_					0	0	0		nc|ENSG00000008394|P10620-2|MGST1	nc|ENSG00000008394|P10620-2|MGST1	nc|ENSG00000008394|P10620-2|MGST1	MULTI-SECPEP	HCT116MG_D190212_S1	1	355.06976318359375	4	354.452291	1413.78006	-0.019188	-6.8011E-06	0.078144	2.7698E-05	0.058956	2.0897E-05	354.703064052477	16.863	0.15626	16.863	16.733	16.889	0					4	2	2	0	0	0	0.36598	1	5704	5704		1.2148	0.10508	1	2557200			32929	9365	20783	20895	31697	31697					0.08971941900699676
TDDSASAI	8	Unmodified	_TDDSASAI_					0	0	0			REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	779.34228515625	1	779.341754	778.334478	0.81929	0.0006385	-0.055727	-4.3431E-05	0.76356	0.00059507	779.341601522691	22.715	0.26058	22.715	22.585	22.845	0					6	4	2	0	0	0	0.40466	1	8081	8081		49.669	9.2203	1	4870000	+		32930	13152	20784	20896	31698	31698					-0.06355625949606747
TDDSASAI	8	Unmodified	_TDDSASAI_					0	0	0			REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	REV__ENST00000459686.5_1_17:27945497-27949916:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	779.3421020507812	1	779.341754	778.334478	0.73738	0.00057467	0.57372	0.00044713	1.3111	0.0010218	779.3419238918992	22.905	0.41842	22.668	22.497	22.916	-0.23758					10	7	2	0	0	0	0.40466	1	7999	7999		49.669	9.2203	1	6481800	+		32931	13152	20784	20896	31699	31699					-0.06355625949606747
TDDSKTAQAP	10	Unmodified	_TDDSKTAQAP_					0	0	0		BIRC6|p.N3598T|1|0.11|ENSG00000115760|chr2:32515214-32515214|A/C|missense_variant	BIRC6|p.N3598T|1|0.11|ENSG00000115760|chr2:32515214-32515214|A/C|missense_variant	BIRC6|p.N3598T|1|0.11|ENSG00000115760|chr2:32515214-32515214|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	518.7744750976562	2	517.24346	1032.47237	0.34819	0.0001801	-0.23169	-0.00011984	0.1165	6.0259E-05	517.2432678635885	25.388	0.67661	25.282	25.048	25.724	-0.10618					39	12	4	0	0	0	0.68623	1	9160	9160		21.537	5.3879	1	101160000			32932	267	20785	20897	31700	31700					-0.04256922420995579
TDDTYYYRQRH	11	Unmodified	_TDDTYYYRQRH_					0	0	0		DNAJC18|p.R204Q|1|0.24|ENSG00000170464|chr5:139425063-139425063|C/T|missense_variant	DNAJC18|p.R204Q|1|0.24|ENSG00000170464|chr5:139425063-139425063|C/T|missense_variant	DNAJC18|p.R204Q|1|0.24|ENSG00000170464|chr5:139425063-139425063|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	759.3438110351562	2	759.342029	1516.6695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.391	1	42.088	41.588	42.588	-0.30352								0	0	0	0.9598	1	15790	15790		1.1933	0.23107	1				32933	716	20786	20898	31701	31701					-0.06816322878216852
TDEEPVKK	8	Unmodified	_TDEEPVKK_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL;nc|ENSG00000152795|O14979-3|HNRNPDL;HNRNPDL|p.L290Ifs*15|1|0.1|ENSG00000152795|chr4:82427471-82427472|-/T|frameshift_variant	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MULTI-MSMS	HCT116MG_D190212_S1	1	946.7239990234375	1	945.488753	944.481476	0.90949	0.00085991	0.10289	9.7283E-05	1.0124	0.0009572	945.4892351356029	45.477	0.31311	45.477	45.347	45.66	0					8	5	2	0	0	0	0.50777	1	17284	17284		40.449	0	1	11427000			32934	4162	20787	20899	31702	31702					0.007014709353370563
TDELLQGLNLQ	11	Unmodified	_TDELLQGLNLQ_					0	0	0			REV__NCKAP5L|p.I725Yfs*12|1|0.11|ENSG00000167566|chr12:49795688-49795688|C/-|frameshift_variant	REV__NCKAP5L|p.I725Yfs*12|1|0.11|ENSG00000167566|chr12:49795688-49795688|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	622.3277587890625	2	622.330067	1242.64558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.766	1	19.766	19.266	20.266	0								0	0	0	0.93717	1	6873	6873		13.042	1.5478	1		+		32935	13154	20788	20900	31703	31703					0.033964436354153804
TDENWLCFNYF	11	Unmodified	_TDENWLCFNYF_					0	0	0			REV__TMEM140|p.Q99Sfs*5|2|0.11|ENSG00000146859|chr7:135164731-135164731|C/-|frameshift_variant	REV__TMEM140|p.Q99Sfs*5|2|0.11|ENSG00000146859|chr7:135164731-135164731|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	726.3760375976562	2	726.300452	1450.58635	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.648	1	37.545	37.045	38.045	-0.10318								0	0	0	0.95686	1	14119	14119		2.7352	1.2533	1		+		32936	12496	20789	20901	31704	31704					-0.1209177565040136
TDESWEYL	8	Unmodified	_TDESWEYL_					0	0	0		CON__Q2KIH2	CON__Q2KIH2	CON__Q2KIH2	MULTI-MSMS	HCT116MG_D190212_S3	3	1042.4407958984375	1	1042.43638	1041.42911	0.68899	0.00071823	2.012	0.0020974	2.701	0.0028156	1042.4375036407605	45.016	0.31249	44.706	44.576	44.889	-0.30927					8	5	2	0	0	0	0.62424	1	16859	16859		30.225	1.738	1	5992900		+	32937	573	20790	20902	31705	31705					-0.08995112198294919
TDFAKAQA	8	Unmodified	_TDFAKAQA_					0	0	0			REV__OR51E1|p.G241D|1|0.3|ENSG00000180785|chr11:4653248-4653248|G/A|missense_variant	REV__OR51E1|p.G241D|1|0.3|ENSG00000180785|chr11:4653248-4653248|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	426.216552734375	2	426.216517	850.418482	0.25117	0.00010705	-0.1113	-4.7437E-05	0.13987	5.9614E-05	426.21647998778707	31.858	0.4655	31.609	31.406	31.872	-0.24883					12	8	2	0	0	0	0.64404	1	11797	11797		28.487	2.1456	1	10169000	+		32938	17371	20791	20903	31706	31706					-0.012710500620528364
TDFAKAQA	8	Unmodified	_TDFAKAQA_					0	0	0			REV__OR51E1|p.G241D|1|0.3|ENSG00000180785|chr11:4653248-4653248|G/A|missense_variant	REV__OR51E1|p.G241D|1|0.3|ENSG00000180785|chr11:4653248-4653248|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	426.2164611816406	2	426.216517	850.418482	0.0015467	6.5923E-07	0.26671	0.00011368	0.26826	0.00011434	426.2166038052075	32.001	0.36383	31.722	31.63	31.994	-0.27841					9	6	2	0	0	0	0.64404	1	11738	11738		28.487	2.1456	1	5941600	+		32939	17371	20791	20903	31707	31707					-0.012710500620528364
TDFDGTRVY	9	Unmodified	_TDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;PIM2|p.Y194S|1|0.6|ENSG00000102096|chrX:48915034-48915034|T/G|missense_variant	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MSMS	HCT116MG_D190212_S2	2	537.248779296875	2	537.248546	1072.48254	0.69773	0.00037486	1.2225	0.00065676	1.9202	0.0010316	537.2485752965432	34.501	0.41351	34.326	34.02	34.433	-0.17511					16	7	3	0	0	0	0.13424	1	12807	12807		51.415	19.11	1	24309000			32940	1823	20792	20904	31708	31708					-0.050803146957377976
TDFDGTRVY	9	Unmodified	_TDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1;PIM2|p.Y194S|1|0.6|ENSG00000102096|chrX:48915034-48915034|T/G|missense_variant	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	537.248546	1072.48254	0.47703	0.00025628	-0.14642	-7.8664E-05	0.33061	0.00017762	537.2484647422508	34.363	0.31287	34.363	34.128	34.441	0	0.018607	-0.00021965	NaN	51.415	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3737600			32941	1823	20792	20904							-0.050803146957377976
TDFESPFIIDH	11	Unmodified	_TDFESPFIIDH_					0	0	0			REV__ENST00000582201.5_1_17:62781409-62811241:-|nuORF	REV__ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MSMS	HCT116MG_D190212_S3	3	660.8075561523438	2	660.808968	1319.60338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.98	1	38.679	38.179	39.179	-0.30137								0	0	0	0.95113	1	14458	14458		5.7319	0.43497	1		+		32942	16629	20793	20905	31709	31709					-0.043635317729467715
TDFFYNFDAP	10	Unmodified	_TDFFYNFDAP_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-SECPEP	HCT116MG_D190212_S3	3	619.35498046875	2	618.764029	1235.5135	0.35829	0.00022169	-0.64046	-0.0003963	-0.28218	-0.0001746	618.7635270646535	31.57	0.73079	31.299	30.803	31.534	-0.27028					17	13	2	0	0	0	0.30856	1	11400	11400		10.824	8.7642	1	11678000	+		32943	14025	20794	20906	31710	31710					-0.0948316138149039
TDFIGYSGPAG	11	Unmodified	_TDFIGYSGPAG_					0	0	0		tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	tr|U7T2T3|U7T2T3_FUSNUGlutaconateCoA-transferase,subunitAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00406PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	542.749267578125	2	542.750921	1083.48729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.072	1	15.908	15.408	16.408	-0.16364								0	0	0	0.94924	1	5232	5232		6.7232	0	1				32944	18583	20795	20907	31711	31711					-0.051114305530063575
TDFMQLNKRRQ	11	Unmodified	_TDFMQLNKRRQ_					0	0	0		TASP1|p.K217N|1|0.04|ENSG00000089123|chr20:13559032-13559032|C/A|missense_variant	TASP1|p.K217N|1|0.04|ENSG00000089123|chr20:13559032-13559032|C/A|missense_variant	TASP1|p.K217N|1|0.04|ENSG00000089123|chr20:13559032-13559032|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	718.8727416992188	2	718.874985	1435.73542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.55	1	42.247	41.747	42.747	-0.30352								0	0	0	0.94755	1	15854	15854		7.609	1.4032	1				32945	18260	20796	20908	31712	31712					0.03497794763006823
TDGALQLYH	9	Unmodified	_TDGALQLYH_					0	0	0			REV__WFS1|p.L293Cfs*11|1|0.27|ENSG00000109501|chr4:6300668-6300668|C/-|frameshift_variant	REV__WFS1|p.L293Cfs*11|1|0.27|ENSG00000109501|chr4:6300668-6300668|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	509.75384521484375	2	509.253631	1016.49271	0.20693	0.00010538	-1.7935	-0.00091336	-1.5866	-0.00080798	509.7538277669876	41.145	0.30975	41.077	40.83	41.14	-0.068199					7	5	2	0	0	0	0.19461	1	15549	15549		41.84	1.8823	1	18680000	+		32946	11372	20797	20909	31713	31713					-0.014877069705335089
TDGGPSPPP	9	Unmodified	_TDGGPSPPP_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	HCT116MG_D190212_S2	2	412.69287109375	2	412.692875	823.371197	-0.13109	-5.41E-05	0.38069	0.00015711	0.2496	0.00010301	412.6929087643604	20.483	1.4122	20.103	19.709	21.121	-0.37949					49	26	3	0	0	0	0.031005	2	7093	7093;7360		85.357	0	1	19413000	+		32947	13770	20798	20910	31714;31715	31714					-0.04755329333045211
TDGGPSPPP	9	Unmodified	_TDGGPSPPP_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	HCT116MG_D190212_S3	3	824.37744140625	1	824.378474	823.371197	0.81788	0.00067424	-0.23066	-0.00019015	0.58721	0.00048409	824.3780917323336	19.998	1.3537	20.046	19.686	21.04	0.048107					45	25	2	0	0	0	0.1037	1	7195	7195		57.471	0	1	5002400	+		32948	13770	20798	20910	31716	31716					-0.04755329333045211
TDGGPSPPP	9	Unmodified	_TDGGPSPPP_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	412.692875	823.371197	-0.13109	-5.41E-05	0.38069	0.00015711	0.2496	0.00010301	412.6929087643604	20.483	1.4122	20.103	19.709	21.121	-0.37949	-0.099509	0.00017545	NaN	85.357	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19413000	+		32949	13770	20798	20910							-0.04755329333045211
TDGGWGKVE	9	Unmodified	_TDGGWGKVE_					0	0	0			REV__ENST00000507088.5_1_17:48445263-48445404:-|nuORF	REV__ENST00000507088.5_1_17:48445263-48445404:-|nuORF	MSMS	HCT116MG_D190212_S1	1	474.7250671386719	2	474.724707	947.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.148	1	34.148	33.648	34.648	0								0	0	0	0.71946	1	12661	12661		18.146	0.011366	1		+		32950	16154	20799	20911	31717	31717					-0.040959688959446794
TDGHVHLY	8	Unmodified	_TDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	HCT116MG_D190212_S1	1	471.2271728515625	2	471.227417	940.44028	0.32039	0.00015098	-0.38477	-0.00018131	-0.064377	-3.0336E-05	471.2271156518849	27.92	0.26036	27.92	27.8	28.06	0					8	4	2	0	0	0	0.052199	1	10175	10175		120.86	73.936	1	9280600			32951	2634	20800	20912	31718	31718					-0.03232245313495241
TDGHVHLY	8	Unmodified	_TDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	HCT116MG_D190212_S2	2	471.2274475097656	2	471.227417	940.44028	0.2198	0.00010358	-0.15183	-7.1545E-05	0.067977	3.2032E-05	471.2273774848571	28.437	0.25809	28.107	27.977	28.236	-0.32987					6	4	2	0	0	0	0.020569	1	10401	10401		152.78	112.34	1	22953000			32952	2634	20800	20912	31719	31719					-0.03232245313495241
TDGLGLSY	8	Unmodified	_TDGLGLSY_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	HCT116MG_D190212_S2	2	413.2033996582031	2	413.203076	824.391599	0.074076	3.0609E-05	0.26276	0.00010858	0.33684	0.00013918	413.20320280168784	22.307	0.25941	21.922	21.791	22.051	-0.3852					6	4	2	0	0	0	0.6854	1	7936	7936		24.674	3.8027	1	6961300			32953	9497	20801	20913	31720	31720					-0.02762158673237991
TDGLVELEV	9	Unmodified	_TDGLVELEV_					0	0	0			REV__ITGB6|p.G441Wfs*51|1|0.15|ENSG00000115221|chr2:160137773-160137774|-/A|frameshift_variant	REV__ITGB6|p.G441Wfs*51|1|0.15|ENSG00000115221|chr2:160137773-160137774|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	974.5048217773438	1	974.504068	973.496792	0.89792	0.00087503	0.25984	0.00025322	1.1578	0.0011282	974.5038215809801	48.638	0.25927	48.322	48.14	48.399	-0.31596					6	4	2	0	0	0	0.14972	1	18328	18328		48.346	6.2513	1	5598900	+		32954	11533	20802	20914	31721	31721					0.008983377325421316
TDGMMHPNY	9	Unmodified	_TDGMMHPNY_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MSMS	HCT116MG_D190212_S2	2	533.2647094726562	2	533.210052	1064.40555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.039	1	19.664	19.164	20.164	-0.37503								0	0	0	0.76694	1	6983	6983		11.64	0.81637	1		+		32955	13687	20803	20915	31722	31722					-0.12407572508095654
TDHGSDHHYR	10	Unmodified	_TDHGSDHHYR_					0	0	0		ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MSMS	HCT116MG_D190212_S4	4	612.7615356445312	2	612.760675	1223.5068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.327	1	32.945	32.445	33.445	-0.38223								0	0	0	0.95648	1	12131	12131		3.2813	0	1				32956	1330	20804	20916	31723	31723					-0.09601661489523394
TDHLDSMQSE	10	Unmodified	_TDHLDSMQSE_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-9|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	581.7353515625	2	581.737685	1161.46082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.526	1	16.611	16.111	17.111	0.085424								0	0	0	0.91279	1	5490	5490		13.042	3.6593	1				32957	735	20805	20917	31724	31724					-0.11345487506650898
TDIKITVY	8	Unmodified	_TDIKITVY_					0	0	0		ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	ENSG00000124596|ENST00000424266|OARD1	MULTI-MSMS	HCT116MG_D190212_S2	2	476.77130126953125	2	476.771126	951.527698	0.24306	0.00011588	-0.031406	-1.4973E-05	0.21165	0.00010091	476.7711680753541	42.058	0.20737	41.99	41.861	42.068	-0.068199					5	3	2	0	0	0	0.34041	1	15940	15940		55.503	9.4818	1	18251000			32958	2856	20806	20918	31725	31725					0.04999535837418989
TDILKEKY	8	Unmodified	_TDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MSMS	HCT116MG_D190212_S2	2	505.7489929199219	2	505.281857	1008.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.459	1	26.097	25.597	26.597	-0.36164								0	0	0	0.45365	1	9574	9574		45.74	14.472	1				32959	1915	20807	20919	31726	31726					0.04522920866145341
TDIPFKDL	8	Unmodified	_TDIPFKDL_					0	0	0		tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	tr|U7SUH5|U7SUH5_FUSNUUvrABCsystemproteinAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01159PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	474.9124755859375	2	474.755475	947.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.7	1	26.343	25.843	26.843	-0.35664								0	0	0	0.87079	1	9671	9671		16.942	0	1				32960	18479	20808	20920	31727	31727					0.02054962803322269
TDIVTMQVLP	10	Unmodified	_TDIVTMQVLP_					0	0	0		ITGB2|p.V439M|1|0.26|ENSG00000160255|chr21:44891906-44891906|C/T|missense_variant	ITGB2|p.V439M|1|0.26|ENSG00000160255|chr21:44891906-44891906|C/T|missense_variant	ITGB2|p.V439M|1|0.26|ENSG00000160255|chr21:44891906-44891906|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	558.8009033203125	2	558.8021	1115.58965	0.51144	0.00028579	-3.5648	-0.001992	-3.0534	-0.0017062	558.8005365020067	56.407	0.2622	56.124	55.993	56.255	-0.28367					5	4	2	0	0	0	0.30788	1	21451	21451		8.7454	0.58988	1	1088000			32961	9249	20809	20921	31728	31728					0.03647519194259985
TDKERFAE	8	Unmodified	_TDKERFAE_					0	0	0			REV__ENSG00000162517|ENST00000373703|PEF1	REV__ENSG00000162517|ENST00000373703|PEF1	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2435607910156	2	498.243264	994.471974	0.50389	0.00025106	0.23622	0.00011769	0.74011	0.00036875	498.24327787323	25.902	0.72928	25.774	25.286	26.016	-0.12795					18	13	2	0	0	0	0.7524	1	9176	9176		16.942	2.104	1	3594200	+		32962	12878	20810	20922	31729	31729					-0.025482973501880224
TDKEVLDY	8	Unmodified	_TDKEVLDY_					0	0	0		tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	tr|U7SNU5|U7SNU5_FUSNUDKNYYfamilyproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01703PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	982.4735107421875	1	982.472768	981.465492	1.0156	0.00099777	0.099441	9.7699E-05	1.115	0.0010955	982.4728466915475	40.907	0.26044	40.606	40.423	40.684	-0.30185					6	4	2	0	0	0	0.28659	1	15209	15209		60.39	12.044	1	3757600			32963	18373	20811	20923	31730	31730					-0.025982353015706394
TDKIVDSGP	9	Unmodified	_TDKIVDSGP_					0	0	0		ENST00000446265.3_1:149647111-149647681:+|nuORF	ENST00000446265.3_1:149647111-149647681:+|nuORF	ENST00000446265.3_1:149647111-149647681:+|nuORF	MSMS	HCT116MG_D190212_S3	3	466.25830078125	2	466.24019	930.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.588	1	29.352	28.852	29.852	-0.23655								0	0	0	0.59795	1	10755	10755		24.021	0	1				32964	7954	20812	20924	31731	31731					-0.0021881558170662174
TDKQELHA	8	Unmodified	_TDKQELHA_					0	0	0			REV__ENST00000478166.5_1_1:212550158-212551000:-|nuORF	REV__ENST00000478166.5_1_1:212550158-212551000:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	471.23797607421875	2	471.237981	940.461409	0.18505	8.7204E-05	-0.37668	-0.0001775	-0.19162	-9.0301E-05	471.2376982088595	22.171	0.20825	22.172	22.042	22.25	0.00074577					5	3	2	0	0	0	0.66231	1	7792	7792		26.884	5.3467	1	3250500	+		32965	15930	20813	20925	31732	31732					-0.011202800046135053
TDKVYYNHS	9	Unmodified	_TDKVYYNHS_					0	0	0		tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	tr|U7SPC7|U7SPC7_FUSNULargeribosomalsubunitproteinuL13OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplMPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	564.259033203125	2	563.76182	1125.50909	0.43721	0.00024648	-0.11471	-6.4666E-05	0.3225	0.00018181	563.7617051769777	32.505	0.57309	32.227	31.942	32.515	-0.27841					34	10	5	0	0	0	0.56733	1	11804	11804		13.042	1.4022	1	73886000			32966	18380	20814	20926	31733	31733					-0.048646258044072965
TDLHSSTHLD	10	Unmodified	_TDLHSSTHLD_					0	0	0			REV__ENSG00000105063|ENST00000412770|PPP6R1	REV__ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	HCT116MG_D190212_S3	3	563.2621459960938	2	563.262185	1124.50982	0.33132	0.00018662	-0.13172	-7.419E-05	0.19961	0.00011243	563.2621051913544	18.225	0.93714	18.302	17.633	18.57	0.076334					32	17	3	0	0	0	0.56527	1	6116	6116		30.637	4.3684	1	4962900	+		32967	11233	20815	20927	31734	31734					-0.04745831155378255
TDLHWDHDYL	10	Unmodified	_TDLHWDHDYL_					0	0	0		SMPD1|p.F333Sfs*52|1|0.17|ENSG00000166311|chr11:6392056-6392056|C/-|frameshift_variant;nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1;nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1	SMPD1|p.F333Sfs*52|1|0.17|ENSG00000166311|chr11:6392056-6392056|C/-|frameshift_variant	SMPD1|p.F333Sfs*52|1|0.17|ENSG00000166311|chr11:6392056-6392056|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	438.86376953125	3	438.863165	1313.56767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.591	1	11.591	11.091	12.091	0								0	0	0	0.97045	1	3662	3662		0.15932	0	1				32968	4838	20816	20928	31735	31735					-0.07657569229945693
TDLIEKVAK	9	Unmodified	_TDLIEKVAK_					0	0	0			REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	REV__DNAH10|p.D3416Mfs*54|1|0.28|ENSG00000197653|chr12:123914871-123914871|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	508.2622985839844	2	508.802957	1015.59136	0.5763	0.00029322	-0.22562	-0.0001148	0.35067	0.00017842	508.80260256433627	29.442	0.30842	29.141	28.929	29.237	-0.30095					9	5	3	0	0	0	0.23782	1	10798	10798		7.609	0	1	11284000	+		32969	10378	20817	20929	31736	31736					0.08418896274520193
TDLINTDSP	9	Unmodified	_TDLINTDSP_					0	0	0			REV__ENST00000489022.5_1_7:134133851-134143844:-|nuORF	REV__ENST00000489022.5_1_7:134133851-134143844:-|nuORF	MSMS	HCT116MG_D190212_S3	3	488.235107421875	2	488.235104	974.455655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.389	1	20.437	19.937	20.937	0.048107								0	0	0	0.74436	1	7049	7049		16.942	1.0951	1		+		32970	10923	20818	20930	31737	31737					-0.03259423306951703
TDLIYNLL	8	Unmodified	_TDLIYNLL_					0	0	0		LNPEP|p.T870Lfs*15|1|0.37|ENSG00000113441|chr5:97024563-97024563|A/-|frameshift_variant;nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	LNPEP|p.T870Lfs*15|1|0.37|ENSG00000113441|chr5:97024563-97024563|A/-|frameshift_variant	LNPEP|p.T870Lfs*15|1|0.37|ENSG00000113441|chr5:97024563-97024563|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	964.4990234375	1	964.534975	963.527698	0.69241	0.00066785	0.22608	0.00021806	0.91848	0.00088591	964.5345404996602	55.83	0.2072	55.645	55.535	55.742	-0.18565					5	3	2	0	0	0	0.23191	1	21496	21496		26.341	0	1	12884000			32971	2388	20819	20931	31738	31738					0.04447535837425676
TDLKQSHS	8	Unmodified	_TDLKQSHS_					0	0	0		nc|ENSG00000264006|Q5T2L2|AKR1C8;ENSG00000264006|ENST00000648824|AKR1C8	nc|ENSG00000264006|Q5T2L2|AKR1C8	nc|ENSG00000264006|Q5T2L2|AKR1C8	MSMS	HCT116MG_D190212_S3	3	458.22900390625	2	458.230156	914.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.198	1	35.898	35.398	36.398	-0.30042								0	0	0	0.8837	1	13367	13367		7.2892	0.56607	1				32972	6641	20820	20932	31739	31739					-0.0148856652166387
TDLPSPIGP	9	Unmodified	_TDLPSPIGP_					0	0	0			REV__ENSG00000154485|ENST00000368808|MMP21	REV__ENSG00000154485|ENST00000368808|MMP21	MULTI-MSMS	HCT116MG_D190212_S3	3	448.7395935058594	2	448.739825	895.465098	0.092024	4.1295E-05	-0.35197	-0.00015794	-0.25995	-0.00011665	448.739620250317	34.296	0.31209	34.001	33.871	34.184	-0.29419					8	5	2	0	0	0	0.32162	1	12647	12647		28.487	6.7402	1	5772400	+		32973	12681	20821	20933	31740	31740					0.013183897692329083
TDLRKRCKLK	10	Unmodified	_TDLRKRCKLK_					0	0	0		chr17:48643078-48652389|414|26.1|0.57|5.52|+|1|None,LINC02086|2	chr17:48643078-48652389|414|26.1|0.57|5.52|+|1|None,LINC02086|2	chr17:48643078-48652389|414|26.1|0.57|5.52|+|1|None,LINC02086|2	MSMS	HCT116MG_D190212_S3	3	630.8836059570312	2	630.882081	1259.74961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.967	1	54.675	54.175	55.175	-0.2918								0	0	0	0.92607	1	20840	20840		10.074	1.3285	1				32974	452	20822	20934	31741	31741					0.13012491981953644
TDLTTCLTVP	10	Unmodified	_TDLTTCLTVP_					0	0	0			REV__ENST00000420685.1_1_21:15219408-15219965:-|nuORF	REV__ENST00000420685.1_1_21:15219408-15219965:-|nuORF	MSMS	HCT116MG_D190212_S3	3	532.2708129882812	2	532.270632	1062.52671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.705	1	33.415	32.915	33.915	-0.29013								0	0	0	0.86471	1	12380	12380		20.454	5.6154	1		+		32975	15521	20823	20935	31742	31742					-0.002050465938054913
TDLVRLQH	8	Unmodified	_TDLVRLQH_					0	0	0			REV__nc|ENSG00000164088|Q96MI6-3|PPM1M	REV__nc|ENSG00000164088|Q96MI6-3|PPM1M	MSMS	HCT116MG_D190212_S4	4	491.277099609375	2	491.277441	980.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.611	1	27.29	26.79	27.79	-0.32157								0	0	0	0.8837	1	9892	9892		10.824	0	1		+		32976	12976	20824	20936	31743	31743					0.049279920203161964
TDNKIQINA	9	Unmodified	_TDNKIQINA_					0	0	0		ENSG00000165506|ENST00000298292|DNAAF2	ENSG00000165506|ENST00000298292|DNAAF2	ENSG00000165506|ENST00000298292|DNAAF2	MULTI-MSMS	HCT116MG_D190212_S2	2	508.8026428222656	2	508.772188	1015.52982	0.5709	0.00029046	0.27641	0.00014063	0.84731	0.00043109	508.77238755374754	29.423	0.36001	29.122	28.929	29.289	-0.30095					13	6	3	0	0	0	0.33687	1	10826	10826		26.884	0.86295	1	54423000			32977	4779	20825	20937	31744	31744					0.022679645752418764
TDPAGEMGRVQ	11	Unmodified	_TDPAGEMGRVQ_					0	0	0		ENSG00000122254|ENST00000261374|HS3ST2	ENSG00000122254|ENST00000261374|HS3ST2	ENSG00000122254|ENST00000261374|HS3ST2	MSMS	HCT116MG_D190212_S1	1	580.769287109375	2	580.771862	1159.52917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.246	1	20.246	19.746	20.746	0								0	0	0	0.93717	1	7066	7066		13.042	0	1				32978	2755	20826	20938	31745	31745					-0.044211981361286234
TDPGGSPPP	9	Unmodified	_TDPGGSPPP_					0	0	0			REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	824.3802490234375	1	824.378474	823.371197	0.8976	0.00073996	-0.02475	-2.0403E-05	0.87285	0.00071956	824.3783931468458	20.182	0.99145	20.182	19.756	20.748	0					28	18	2	0	0	0	0.010304	1	6986	6986		112.59	12.222	1	5190700	+		32979	16689	20827	20939	31746	31746					-0.04755329333045211
TDPGGSPPP	9	Unmodified	_TDPGGSPPP_					0	0	0			REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	824.3765258789062	1	824.378474	823.371197	0.82106	0.00067686	0.0030531	2.5169E-06	0.82411	0.00067938	824.3783215268256	20.408	2.088	20.029	19.657	21.745	-0.37949					63	39	2	0	0	0	0.010304	2	7579	7316;7579		112.59	12.222	1	21983000	+		32980	16689	20827	20939	31747;31748	31748					-0.04755329333045211
TDPGGSPPP	9	Unmodified	_TDPGGSPPP_					0	0	0			REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	824.3786010742188	1	824.378474	823.371197	0.81788	0.00067424	-0.23066	-0.00019015	0.58721	0.00048409	824.3780917323336	19.998	1.3537	20.046	19.686	21.04	0.048107					45	25	2	0	0	0	0.016134	1	6872	6872		100.37	4.0867	1	5002400	+		32981	16689	20827	20939	31749	31749					-0.04755329333045211
TDPGGSPPP	9	Unmodified	_TDPGGSPPP_					0	0	0			REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	REV__ENST00000591022.5_1_17:40828752-40828935:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	824.3031616210938	1	824.378474	823.371197	0.81788	0.00067424	-0.23066	-0.00019015	0.58721	0.00048409	824.3780917323336	19.998	1.3537	20.046	19.686	21.04	0.048107					45	25	2	0	0	0	0.026974	1	6931	6931		100.37	15.015	1	5002400	+		32982	16689	20827	20939	31750	31750					-0.04755329333045211
TDPGRPCGNPA	11	Unmodified	_TDPGRPCGNPA_					0	0	0			REV__ENST00000488036.5_1_1:53553683-53555791:-|nuORF	REV__ENST00000488036.5_1_1:53553683-53555791:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	543.2476806640625	2	542.745647	1083.47674	0.42379	0.00023001	0.10517	5.7079E-05	0.52896	0.00028709	542.745715055816	20.011	0.36345	19.636	19.506	19.869	-0.37503					10	6	2	0	0	0	0.73536	1	7048	7048		8.7454	8.7454	1	16478000	+		32983	16012	20828	20940	31751	31751					-0.06165736479078987
TDPKSRLIQ	9	Unmodified	_TDPKSRLIQ_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L;ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant;ASH1L|p.K2377Nfs*5|1|0.28|ENSG00000116539|chr1:155354570-155354570|T/-|frameshift_variant	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MSMS	HCT116MG_D190212_S4	4	529.3037719726562	2	529.303655	1056.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.707	1	26.406	25.906	26.906	-0.30087								0	0	0	0.67173	1	9527	9527		20.454	3.3407	1				32984	2519	20829	20941	31752	31752					0.06672530363289297
TDPNDLWKD	9	Unmodified	_TDPNDLWKD_					0	0	0		GPANK1|p.S16N|1|0.23|ENSG00000204438|chr6:31664432-31664432|C/T|missense_variant	GPANK1|p.S16N|1|0.23|ENSG00000204438|chr6:31664432-31664432|C/T|missense_variant	GPANK1|p.S16N|1|0.23|ENSG00000204438|chr6:31664432-31664432|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	552.2536010742188	2	552.253828	1102.4931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.526	1	36.14	35.64	36.64	-0.38558								0	0	0	0.76718	1	13370	13370		10.824	0.024421	1				32985	9186	20830	20942	31753	31753					-0.05404332041325688
TDPPSVSAVN	10	Unmodified	_TDPPSVSAVN_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;HMCN2|p.P4784Qfs*22|1|0.32|ENSG00000148357|chr9:130430363-130430363|C/-|frameshift_variant;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	HCT116MG_D190212_S2	2	494.2464294433594	2	493.743096	985.47164	0.18119	8.9464E-05	0.26402	0.00013036	0.44522	0.00021982	493.74311850992586	14.64	0.99031	14.32	14.088	15.079	-0.31952					48	18	4	0	0	0	0.28843	1	5103	5103		24.021	7.8715	1	19380000			32986	4020	20831	20943	31754	31754					-0.021677170700399984
TDPSREHS	8	Unmodified	_TDPSREHS_					0	0	0			REV__ENST00000526020.5_1_11:10876576-10877800:-|nuORF	REV__ENST00000526020.5_1_11:10876576-10877800:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	464.2303771972656	2	464.709588	927.404623	0.23454	0.000109	0.13241	6.1532E-05	0.36695	0.00017053	464.70961629879844	16.49	0.46799	16.575	16.237	16.705	0.085424					14	8	2	0	0	0	0.32291	1	5372	5372		3.9444	0	1	2845200	+		32987	16273	20832	20944	31755	31755					-0.061983275611282806
TDPSREHS	8	Unmodified	_TDPSREHS_					0	0	0			REV__ENST00000526020.5_1_11:10876576-10877800:-|nuORF	REV__ENST00000526020.5_1_11:10876576-10877800:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	464.709588	927.404623	0.22045	0.00010244	0.032339	1.5028E-05	0.25279	0.00011747	464.7096191034653	16.9	0.46819	16.558	16.36	16.828	-0.34183	0.038413	-0.00017446	NaN	3.9444	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1584400	+		32988	16273	20832	20944							-0.061983275611282806
TDPSREHS	8	Unmodified	_TDPSREHS_					0	0	0			REV__ENST00000526020.5_1_11:10876576-10877800:-|nuORF	REV__ENST00000526020.5_1_11:10876576-10877800:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	464.709588	927.404623	-0.58457	-0.00027166	0.75969	0.00035304	0.17512	8.1382E-05	464.70990187596	16.593	0.49093	16.426	16.221	16.712	-0.16664	-0.093797	0.00050156	NaN	3.9444	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1489300	+		32989	16273	20832	20944							-0.061983275611282806
TDQELYIFDIN	11	Unmodified	_TDQELYIFDIN_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF;TENM3|p.G1986Dfs*16|1|0.07|ENSG00000218336|chr4:182792628-182792629|-/ATGGA|frameshift_variant;TENM3|p.Y2250Mfs*4|1|0.24|ENSG00000218336|chr4:182793414-182793414|T/-|frameshift_variant	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	HCT116MG_D190212_S3	3	685.8280639648438	2	685.827357	1369.64016	0.91088	0.00062471	-0.41793	-0.00028663	0.49295	0.00033808	685.8272629470154	19.664	0.20823	19.724	19.594	19.802	0.05983					5	3	2	0	0	0	0.74191	1	6785	6785		4.897	0.36815	1	2790400			32990	6459	20833	20945	31756	31756					-0.029872799470467726
TDQLPWTS	8	Unmodified	_TDQLPWTS_					0	0	0		SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant;ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4	SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant	SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	947.44677734375	1	947.446888	946.439611	0.72077	0.00068289	-0.16616	-0.00015743	0.55461	0.00052547	947.4469270550923	35.013	0.72706	34.716	34.284	35.011	-0.29707					25	13	2	0	0	0	0.53596	1	12844	12844		37.974	7.3375	1	6714200			32991	2169	20834	20946	31757	31757					-0.0357508475318582
TDQLPWTS	8	Unmodified	_TDQLPWTS_					0	0	0		SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant;ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4	SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant	SLC6A4|p.I581Mfs*24|1|0.05|ENSG00000108576|chr17:30203246-30203247|CT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	474.2267761230469	2	474.227082	946.439611	0.43983	0.00020858	0.15373	7.2904E-05	0.59356	0.00028148	474.2270125878645	35.117	0.31103	34.731	34.594	34.905	-0.38605					9	5	2	0	0	0	0.78619	1	12860	12860		13.042	2.2185	1	1616200			32992	2169	20834	20946	31758	31758					-0.0357508475318582
TDQLRLLAK	9	Unmodified	_TDQLRLLAK_					0	0	0			REV__nc|ENSG00000122884|P13674-3|P4HA1	REV__nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	HCT116MG_D190212_S4	4	529.3218994140625	2	529.321848	1056.62914	0.70019	0.00037062	-0.44215	-0.00023404	0.25804	0.00013658	529.3215273957076	33.626	0.27382	33.241	33.088	33.362	-0.38426					11	5	3	0	0	0	0.13424	1	12252	12252		65.235	2.6623	1	10526000	+		32993	11750	20835	20947	31759	31759					0.10309407260001535
TDQRPSAPP	9	Unmodified	_TDQRPSAPP_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-4|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-4|DZANK1	MSMS	HCT116MG_D190212_S3	3	484.74365234375	2	484.743431	967.472308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.177	1	24.115	23.615	24.615	-0.061449								0	0	0	0.61599	1	8573	8573		23.148	2.6948	1		+		32994	17088	20836	20948	31760	31760					-0.012728776303333689
TDRLDPISIG	10	Unmodified	_TDRLDPISIG_					0	0	0			REV__nc|ENSG00000112078|Q7Z5Y7-3|KCTD20	REV__nc|ENSG00000112078|Q7Z5Y7-3|KCTD20	MULTI-MSMS	HCT116MG_D190212_S2	2	543.7935180664062	2	543.793121	1085.57169	0.55213	0.00030025	0.011318	6.1548E-06	0.56345	0.0003064	543.793093473242	36.702	0.31043	36.587	36.395	36.705	-0.11478					11	5	3	0	0	0	0.60826	1	13757	13757		27.629	0.40557	1	22798000	+		32995	11444	20837	20949	31761	31761					0.032325202637593975
TDRLDPISIG	10	Unmodified	_TDRLDPISIG_					0	0	0			REV__nc|ENSG00000112078|Q7Z5Y7-3|KCTD20	REV__nc|ENSG00000112078|Q7Z5Y7-3|KCTD20	MULTI-MSMS	HCT116MG_D190212_S3	3	543.7933959960938	2	543.793121	1085.57169	0.41178	0.00022392	-0.42035	-0.00022858	-0.0085635	-4.6568E-06	543.792954236788	36.888	0.31179	36.587	36.405	36.717	-0.30113					8	5	2	0	0	0	0.68623	1	13678	13678		21.537	2.175	1	2496400	+		32996	11444	20837	20949	31762	31762					0.032325202637593975
TDRLGWEP	8	Unmodified	_TDRLGWEP_					0	0	0			REV__ENST00000456420.6_2_16:684599-686105:-|nuORF	REV__ENST00000456420.6_2_16:684599-686105:-|nuORF	MSMS	HCT116MG_D190212_S4	4	487.239990234375	2	487.240524	972.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.991	1	31.616	31.116	32.116	-0.37529								0	0	0	0.8837	1	11634	11634		14.582	0	1		+		32997	15752	20838	20950	31763	31763					-0.020839761420006653
TDRLREVI	8	Unmodified	_TDRLREVI_					0	0	0		sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1;sp|P08546|DPOL_HCMVADNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL54PE=1SV=2	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	501.29052734375	2	501.290548	1000.56654	0.47405	0.00023763	0.0045204	2.2661E-06	0.47857	0.0002399	501.2905130309798	46.785	1.8891	46.471	45.94	47.829	-0.31405					48	37	2	0	0	0	0.82475	1	17982	17982		8.5933	0.43775	1	7005800			32998	18206	20839	20951	31764	31764					0.06628261191792717
TDRNVAVI	8	Unmodified	_TDRNVAVI_					0	0	0		ENST00000554631.2_1_14:95624158-95624227:+|nuORF	ENST00000554631.2_1_14:95624158-95624227:+|nuORF	ENST00000554631.2_1_14:95624158-95624227:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	444.2510070800781	2	444.250892	886.48723	0.42327	0.00018804	0.067426	2.9954E-05	0.49069	0.00021799	444.25085485859665	36.24	0.3626	36.112	35.916	36.278	-0.12799					11	6	3	0	0	0	0.28659	1	13566	13566		60.39	1.7107	1	20318000			32999	8779	20840	20952	31765	31765					0.03944614237661881
TDRRFYEFIKF	11	Unmodified	_TDRRFYEFIKF_					0	0	0			REV__ENST00000563822.1_1_16:1505719-1509320:-|nuORF	REV__ENST00000563822.1_1_16:1505719-1509320:-|nuORF	MSMS	HCT116MG_D190212_S3	3	761.3988647460938	2	761.396076	1520.7776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.197	1	16.283	15.783	16.783	0.085424								0	0	0	0.96141	1	5357	5357		0.35063	0.043601	1		+		33000	11186	20841	20953	31766	31766					0.038040934430227935
TDRRLPAN	8	Unmodified	_TDRRLPAN_					0	0	0			REV__ENST00000585061.1_1_18:20729928-20837916:+|nuORF	REV__ENST00000585061.1_1_18:20729928-20837916:+|nuORF	MSMS	HCT116MG_D190212_S4	4	471.7589416503906	2	471.759415	941.504277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.016	1	18.829	18.329	19.329	-0.18674								0	0	0	0.51868	1	6422	6422		42.095	6.0504	1		+		33001	16647	20842	20954	31767	31767					0.03118534843474663
TDRRSTFQA	9	Unmodified	_TDRRSTFQA_					0	0	0		nc|ENSG00000154059|Q9P2X3-2|IMPACT;ENSG00000154059|ENST00000284202|IMPACT	nc|ENSG00000154059|Q9P2X3-2|IMPACT	nc|ENSG00000154059|Q9P2X3-2|IMPACT	MSMS	HCT116MG_D190212_S1	1	361.184814453125	3	361.18435	1080.53122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.283	1	21.283	20.783	21.783	0								0	0	0	0.76849	1	7479	7479		3.8763	0	1				33002	4203	20843	20955	31768	31768					-0.005824013360097524
TDRVWEVP	8	Unmodified	_TDRVWEVP_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MULTI-SECPEP	HCT116MG_D190212_S1	1	501.78131103515625	2	501.256174	1000.49779	0.21004	0.00010528	-0.17278	-8.6605E-05	0.037265	1.868E-05	501.2561328773021	32.229	0.78198	32.229	31.857	32.639	0					34	14	3	0	0	0	0.30262	1	11969	11969		8.5933	0	1	28453000	+		33003	12053	20844	20956	31769	31769					-0.0024340310790194053
TDSASLPLA	9	Unmodified	_TDSASLPLA_					0	0	0			REV__nc|ENSG00000151726|P33121-3|ACSL1	REV__nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MSMS	HCT116MG_D190212_S3	3	874.45263671875	1	874.451639	873.444362	1.023	0.00089459	-0.12955	-0.00011329	0.89347	0.0007813	874.4514474896004	40.896	0.3126	40.594	40.423	40.736	-0.3018					8	5	2	0	0	0	0.026974	1	15205	15205		89.427	11.442	1	3609100	+		33004	17163	20845	20957	31770	31770					0.002577993895670261
TDSEEQTLP	9	Unmodified	_TDSEEQTLP_					0	0	0		TRIM9|p.N657Kfs*9|1|0.29|ENSG00000100505|chr14:50979486-50979487|-/T|frameshift_variant;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9;ENST00000555933.1_1_14:51449651-51452878:-|nuORF	TRIM9|p.N657Kfs*9|1|0.29|ENSG00000100505|chr14:50979486-50979487|-/T|frameshift_variant	TRIM9|p.N657Kfs*9|1|0.29|ENSG00000100505|chr14:50979486-50979487|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	510.2309875488281	2	510.230019	1018.44548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.285	1	15.285	14.785	15.785	0								0	0	0	0.76781	1	5067	5067		8.5933	0	1				33005	1716	20846	20958	31771	31771					-0.06300031032174047
TDSPSWFTP	9	Unmodified	_TDSPSWFTP_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.22998046875	2	519.232364	1036.45018	0.24351	0.00012644	-3.3957	-0.0017631	-3.1521	-0.0016367	519.2300852329287	19.802	0.26052	19.862	19.75	20.011	0.059828					6	4	2	0	0	0	0.22781	1	6837	6837		11.64	0	1	2986200	+		33006	11200	20847	20959	31772	31772					-0.06659102098751646
TDSRPGAEGAP	11	Unmodified	_TDSRPGAEGAP_					0	0	0			REV__ENST00000419593.5_1_20:43991879-44037446:+|nuORF	REV__ENST00000419593.5_1_20:43991879-44037446:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.7755126953125	2	529.249077	1056.4836	0.1583	8.3778E-05	-0.078538	-4.1566E-05	0.079759	4.2212E-05	529.2492796349763	18.866	0.15656	18.503	18.425	18.581	-0.36325					4	2	2	0	0	0	0.32753	1	6511	6511		21.537	8.0291	1	6174200	+		33007	15509	20848	20960	31773	31773					-0.04238100326847416
TDSRPGAEGAP	11	Unmodified	_TDSRPGAEGAP_					0	0	0			REV__ENST00000419593.5_1_20:43991879-44037446:+|nuORF	REV__ENST00000419593.5_1_20:43991879-44037446:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	529.2490234375	2	529.249077	1056.4836	0.33744	0.00017859	0.099063	5.2429E-05	0.4365	0.00023102	529.24920175556	18.111	0.25985	18.187	17.997	18.257	0.076334					5	4	2	0	0	0	0.62391	1	6155	6155		32.786	7.3864	1	1992300	+		33008	15509	20848	20960	31774	31774					-0.04238100326847416
TDSRPGAEGAP	11	Unmodified	_TDSRPGAEGAP_					0	0	0			REV__ENST00000419593.5_1_20:43991879-44037446:+|nuORF	REV__ENST00000419593.5_1_20:43991879-44037446:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	529.2164916992188	2	529.249077	1056.4836	0.33744	0.00017859	0.099063	5.2429E-05	0.4365	0.00023102	529.24920175556	18.111	0.25985	18.187	17.997	18.257	0.076334					5	4	2	0	0	0	0.3312	1	6114	6114		32.786	8.7651	1	1992300	+		33009	15509	20848	20960	31775	31775					-0.04238100326847416
TDSSVLVI	8	Unmodified	_TDSSVLVI_					0	0	0			REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	833.4620971679688	1	833.461475	832.454199	0.68309	0.00056933	0.45005	0.0003751	1.1331	0.00094442	833.4615985447163	44.33	0.26949	44.33	44.141	44.41	0					7	4	2	0	0	0	0.13911	1	16771	16771		86.121	0	1	33493000	+		33010	13622	20849	20961	31776	31776					0.031269873949554494
TDSSVLVI	8	Unmodified	_TDSSVLVI_					0	0	0			REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	833.4618530273438	1	833.461475	832.454199	0.71829	0.00059867	-0.15289	-0.00012743	0.5654	0.00047124	833.461138665018	44.333	0.52275	44.249	44.012	44.535	-0.084797					21	9	3	0	0	0	0.13911	1	16818	16818		86.121	0	1	120530000	+		33011	13622	20849	20961	31777	31777					0.031269873949554494
TDSSVLVI	8	Unmodified	_TDSSVLVI_					0	0	0			REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	833.4622802734375	1	833.461475	832.454199	1.0567	0.00088074	-0.10656	-8.881E-05	0.95017	0.00079193	833.4611752606771	44.576	0.6113	44.268	44.071	44.682	-0.30759					25	15	2	0	0	0	0.13911	1	16648	16648		86.121	0	1	65303000	+		33012	13622	20849	20961	31778	31778					0.031269873949554494
TDSSVLVI	8	Unmodified	_TDSSVLVI_					0	0	0			REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	833.4619750976562	1	833.461475	832.454199	0.76927	0.00064115	-0.062336	-5.1955E-05	0.70693	0.0005892	833.4612103984639	44.677	0.40842	44.304	44.121	44.529	-0.37326					29	20	2	0	0	0	0.13911	1	16448	16448		86.121	0	1	27972000	+		33013	13622	20849	20961	31779	31779					0.031269873949554494
TDSSVLVI	8	Unmodified	_TDSSVLVI_					0	0	0			REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	833.461475	832.454199	0.68309	0.00056933	0.45005	0.0003751	1.1331	0.00094442	833.4615985447163	44.33	0.26949	44.33	44.141	44.41	0	0.042331	0.00041105	NaN	86.121	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33493000	+		33014	13622	20849	20961							0.031269873949554494
TDSSVLVI	8	Unmodified	_TDSSVLVI_					0	0	0			REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	833.461475	832.454199	0.71829	0.00059867	-0.15289	-0.00012743	0.5654	0.00047124	833.461138665018	44.333	0.52275	44.249	44.012	44.535	-0.084797	-0.039087	-9.1474E-05	NaN	86.121	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120530000	+		33015	13622	20849	20961							0.031269873949554494
TDSSVLVI	8	Unmodified	_TDSSVLVI_					0	0	0			REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	833.461475	832.454199	1.0567	0.00088074	-0.10656	-8.881E-05	0.95017	0.00079193	833.4611752606771	44.576	0.6113	44.268	44.071	44.682	-0.30759	-0.019437	-5.2854E-05	NaN	86.121	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65303000	+		33016	13622	20849	20961							0.031269873949554494
TDSSVLVI	8	Unmodified	_TDSSVLVI_					0	0	0			REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	REV__TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	833.461475	832.454199	0.76927	0.00064115	-0.062336	-5.1955E-05	0.70693	0.0005892	833.4612103984639	44.677	0.40842	44.304	44.121	44.529	-0.37326	0.016194	-1.5999E-05	NaN	86.121	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27972000	+		33017	13622	20849	20961							0.031269873949554494
TDSSVVNIVED	11	Unmodified	_TDSSVVNIVED_					0	0	0		ANGPTL5|p.E292Kfs*30|1|0.47|ENSG00000187151|chr11:101891573-101891573|T/-|frameshift_variant;ENSG00000187151|ENST00000334289|ANGPTL5	ANGPTL5|p.E292Kfs*30|1|0.47|ENSG00000187151|chr11:101891573-101891573|T/-|frameshift_variant	ANGPTL5|p.E292Kfs*30|1|0.47|ENSG00000187151|chr11:101891573-101891573|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	589.2845458984375	2	589.282783	1176.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.499	1	44.192	43.692	44.692	-0.30759								0	0	0	0.8787	1	16637	16637		22.736	8.8302	1				33018	128	20850	20962	31780	31780					-0.030201149065533173
TDSYWFRYHG	10	Unmodified	_TDSYWFRYHG_					0	0	0			REV__FCAR|p.R110W|1|0.19|ENSG00000186431|chr19:54885492-54885492|C/T|missense_variant	REV__FCAR|p.R110W|1|0.19|ENSG00000186431|chr19:54885492-54885492|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	666.2943725585938	2	666.293819	1330.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.893	1	16.726	16.226	17.226	-0.16664								0	0	0	0.96377	1	5564	5564		1.6526	0	1		+		33019	16814	20851	20963	31781	31781					-0.0789784564749425
TDTECVEVCT	10	Unmodified	_TDTECVEVCT_					0	0	0		ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	MSMS	HCT116MG_D190212_S3	3	550.2174072265625	2	550.21774	1098.42093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.163	1	26.035	25.535	26.535	-0.12795								0	0	0	0.94339	1	9374	9374		6.2058	0.97511	1				33020	846	20852	20964	31782	31782					-0.12434750501552116
TDTECVEVCT	10	Unmodified	_TDTECVEVCT_					0	0	0		ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	MSMS	HCT116MG_D190212_S3	3	550.218017578125	2	550.21774	1098.42093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.243	1	37.942	37.442	38.442	-0.30137								0	0	0	0.94107	1	14160	14160		6.7232	0	1				33021	846	20852	20964	31783	31783					-0.12434750501552116
TDTECVEVCT	10	Unmodified	_TDTECVEVCT_					0	0	0		ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	MSMS	HCT116MG_D190212_S4	4	550.2174682617188	2	550.21774	1098.42093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.342	1	21.127	20.627	21.627	-0.2156								0	0	0	0.95351	1	7362	7362		3.9444	0	1				33022	846	20852	20964	31784	31784					-0.12434750501552116
TDTECVEVCT	10	Unmodified	_TDTECVEVCT_					0	0	0		ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	MSMS	HCT116MG_D190212_S4	4	550.2175903320312	2	550.21774	1098.42093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.434	1	33.051	32.551	33.551	-0.38223								0	0	0	0.92917	1	12171	12171		9.3831	2.0939	1				33023	846	20852	20964	31785	31785					-0.12434750501552116
TDTHLKEYQ	9	Unmodified	_TDTHLKEYQ_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MSMS	HCT116MG_D190212_S3	3	568.2720947265625	2	567.774928	1133.5353	0.54155	0.00030748	-2.5704	-0.0014594	-2.0289	-0.0011519	567.7746767751217	27.523	1.6663	27.335	26.476	28.142	-0.18847					41	31	2	0	0	0	0.41514	1	9825	9825		21.747	7.8406	1	10859000			33024	4541	20853	20965	31786	31786					-0.026123566329715686
TDTKQRKAAP	10	Unmodified	_TDTKQRKAAP_					0	0	0			REV__ENSG00000250782|ENST00000512227|TAF11L14	REV__ENSG00000250782|ENST00000512227|TAF11L14	MSMS	HCT116MG_D190212_S4	4	558.758544921875	2	558.312012	1114.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.487	1	34.102	33.602	34.602	-0.38558								0	0	0	0.91906	1	12595	12595		11.64	0.81637	1		+		33025	14374	20854	20966	31787	31787					0.05675031249234053
TDTQLPLIY	9	Unmodified	_TDTQLPLIY_					0	0	0			REV__THSD4|p.A276Gfs*36|2|0.37|ENSG00000187720|chr15:71243006-71243007|-/G|frameshift_variant	REV__THSD4|p.A276Gfs*36|2|0.37|ENSG00000187720|chr15:71243006-71243007|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	532.305419921875	2	532.28714	1062.55973	0.43135	0.0002296	0.75207	0.00040032	1.1834	0.00062992	532.2873239204082	54.241	0.30832	54.052	53.893	54.201	-0.18939					10	5	2	0	0	0	0.069315	2	20882	20882;20902		65.235	0	1	7759900	+		33026	13930	20855	20967	31788;31789	31788					0.03094903520582193
TDTWVYEYMVF	11	Unmodified	_TDTWVYEYMVF_					0	0	0		ENSG00000196071|ENST00000358120|OR2L13	ENSG00000196071|ENST00000358120|OR2L13	ENSG00000196071|ENST00000358120|OR2L13	MSMS	HCT116MG_D190212_S4	4	727.32080078125	2	727.320854	1452.62715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.538	1	15.377	14.877	15.877	-0.16173								0	0	0	0.95581	1	5017	5017		3.2813	0	1				33027	6040	20856	20968	31790	31790					-0.08105434330832395
TDVAEMLPR	9	Unmodified	_TDVAEMLPR_					0	0	0			REV__nc|ENSG00000082512|O00463-3|TRAF5	REV__nc|ENSG00000082512|O00463-3|TRAF5	MULTI-SECPEP	HCT116MG_D190212_S3	3	516.30126953125	2	516.263142	1030.51173	0.18694	9.6511E-05	-0.26635	-0.0001375	-0.079404	-4.0993E-05	516.7643157087783	36.859	0.41595	36.558	36.301	36.717	-0.30113					11	7	2	0	0	0	0.25874	1	13688	13688		7.2892	0	1	7172200	+		33028	10889	20857	20969	31791	31791					-0.0023049367111980246
TDVDCLKA	8	Unmodified	_TDVDCLKA_					0	0	0		ENSG00000118971|ENST00000261254|CCND2	ENSG00000118971|ENST00000261254|CCND2	ENSG00000118971|ENST00000261254|CCND2	MULTI-MSMS	HCT116MG_D190212_S1	1	433.544921875	2	432.710211	863.405868	-0.070354	-3.0443E-05	0.11278	4.8802E-05	0.042427	1.8359E-05	432.71032483779277	19.653	0.26106	19.653	19.495	19.756	0					7	4	2	0	0	0	0.78216	1	6773	6773		13.508	3.3245	1	1516500			33029	2621	20858	20970	31792	31792					-0.03129829516592508
TDVHYNSL	8	Unmodified	_TDVHYNSL_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MSMS	HCT116MG_D190212_S2	2	474.7246398925781	2	474.724707	947.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.618	1	34.459	33.959	34.959	-0.15834								0	0	0	0.24844	1	12886	12886		61.357	3.8861	1				33030	6439	20859	20971	31793	31793					-0.04095968895956048
TDVKIPELKSW	11	Unmodified	_TDVKIPELKSW_					0	0	0			REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	MSMS	HCT116MG_D190212_S4	4	658.364990234375	2	658.366453	1314.71835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.148	1	35.763	35.263	36.263	-0.38558								0	0	0	0.95273	1	13217	13217		4.897	0	1		+		33031	12068	20860	20972	31794	31794					0.07358197428834501
TDVPEVLFY	9	Unmodified	_TDVPEVLFY_					0	0	0			REV__nc|ENSG00000067141|Q92859-3|NEO1	REV__nc|ENSG00000067141|Q92859-3|NEO1	MSMS	HCT116MG_D190212_S4	4	541.77197265625	2	541.773865	1081.53318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.001	1	21.773	21.273	22.273	-0.22777								0	0	0	0.76077	1	7628	7628		16.942	2.104	1		+		33032	10726	20861	20973	31795	31795					-0.004327853707536633
TDWLLLRGP	9	Unmodified	_TDWLLLRGP_					0	0	0			REV__nc|ENSG00000105875|A4D1P6-2|WDR91	REV__nc|ENSG00000105875|A4D1P6-2|WDR91	MSMS	HCT116MG_D190212_S3	3	535.8015747070312	2	535.803291	1069.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.193	1	27.023	26.523	27.523	-0.16933								0	0	0	0.64498	1	9789	9789		21.747	0.20967	1		+		33033	11279	20862	20974	31796	31796					0.06001735714244205
TDYHVRVY	8	Unmodified	_TDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.A357V|1|0.31|ENSG00000075420|chr3:172307371-172307371|C/T|missense_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MSMS	HCT116MG_D190212_S1	1	526.7488403320312	2	526.761623	1051.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.579	1	29.579	29.079	30.079	0								0	0	0	0.8837	1	10816	10816		14.838	4.0143	1				33034	1317	20863	20975	31797	31797					-0.015000007336084309
TDYKKLYEYIK	11	Unmodified	_TDYKKLYEYIK_					0	0	0		tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	tr|U7STY8|U7STY8_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01035PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	732.389404296875	2	732.392667	1462.77078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.226	1	26.873	26.373	27.373	-0.35254								0	0	0	0.9387	1	9880	9880		12.241	1.4411	1				33035	18459	20864	20976	31798	31798					0.05790735771802247
TDYLVESL	8	Unmodified	_TDYLVESL_					0	0	0			REV__ENSG00000009694|ENST00000371130|TENM1	REV__ENSG00000009694|ENST00000371130|TENM1	MULTI-MSMS	HCT116MG_D190212_S3	3	939.4677124023438	1	939.466955	938.459678	0.53495	0.00050256	0.28856	0.00027109	0.8235	0.00077365	939.4672853318324	51.143	0.3665	50.831	50.648	51.015	-0.31166					10	6	2	0	0	0	0.19622	1	19318	19318		74.396	0	1	6428700	+		33036	10507	20865	20977	31799	31799					-0.012013338132305762
TDYNDFELQWL	11	Unmodified	_TDYNDFELQWL_					0	0	0		PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	722.0659790039062	2	722.324982	1442.63541	0.90518	0.00065383	0.29078	0.00021004	1.196	0.00086387	722.3247815748002	24.386	0.26134	24.386	24.255	24.516	0					7	4	2	0	0	0	0.74191	1	8695	8695		2.7352	1.2533	1	9414900			33037	2962	20866	20978	31800	31800					-0.06820164089799619
TDYVMYPP	8	Unmodified	_TDYVMYPP_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MSMS	HCT116MG_D190212_S1	1	493.2187194824219	2	493.220411	984.426269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.346	1	22.346	21.846	22.846	0								0	0	0	0.8837	1	7907	7907		10.183	0.10947	1				33038	4308	20867	20979	31801	31801					-0.06656658856786635
TEAAPLNQP	9	Unmodified	_TEAAPLNQP_					0	0	0			REV__ENSG00000176774|ENST00000325250|MAGEB18	REV__ENSG00000176774|ENST00000325250|MAGEB18	MSMS	HCT116MG_D190212_S3	3	470.2666320800781	2	470.740357	939.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.391	1	27.222	26.722	27.722	-0.16933								0	0	0	0.53872	1	9869	9869		26.884	2.8631	1		+		33039	13553	20868	20980	31802	31802					-0.0059939586186601446
TEAEDMISA	9	Unmodified	_TEAEDMISA_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	966.4081420898438	1	966.408453	965.401177	0.87452	0.00084515	0.090676	8.763E-05	0.9652	0.00093278	966.4081485973505	35.76	0.25681	35.618	35.489	35.746	-0.14245					6	4	2	0	0	0	0.023611	1	13368	13368		92.822	44.476	1	26558000			33040	253	20869	20981	31803	31803					-0.08290758450016256
TEAEDMISA	9	Unmodified	_TEAEDMISA_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	966.4093017578125	1	966.408453	965.401177	0.49882	0.00048207	0.27288	0.00026371	0.7717	0.00074578	966.4085855599621	35.949	0.40368	35.649	35.482	35.886	-0.30042					12	7	3	0	0	0	0.023611	1	13272	13272		92.822	35.351	1	17370000			33041	253	20869	20981	31804	31804					-0.08290758450016256
TEAEDMISA	9	Unmodified	_TEAEDMISA_					0	0	0		BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	BAZ1B|p.A1298Cfs*10|1|0.16|ENSG00000009954|chr7:73444083-73444084|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	966.408447265625	1	966.408453	965.401177	0.80079	0.00077389	-0.57719	-0.0005578	0.22361	0.0002161	966.4080052936224	36.033	0.19879	35.647	35.526	35.725	-0.38558					6	3	2	0	0	0	0.050578	1	13175	13175		74.423	32.328	1	3902100			33042	253	20869	20981	31805	31805					-0.08290758450016256
TEAEHGQPRP	10	Unmodified	_TEAEHGQPRP_					0	0	0			REV__ENSG00000122375|ENST00000241891|OPN4	REV__ENSG00000122375|ENST00000241891|OPN4	MULTI-MSMS	HCT116MG_D190212_S3	3	561.2710571289062	2	561.270344	1120.52613	0.37113	0.0002083	0.55767	0.000313	0.9288	0.00052131	561.2706735496475	21.896	0.99698	21.897	21.149	22.146	0.00074577					28	18	3	0	0	0	0.64004	1	7684	7684		25.399	0	1	7953300	+		33043	11735	20870	20982	31806	31806					-0.029307051986279475
TEAEHGQPRP	10	Unmodified	_TEAEHGQPRP_					0	0	0			REV__ENSG00000122375|ENST00000241891|OPN4	REV__ENSG00000122375|ENST00000241891|OPN4	MULTI-MSMS	HCT116MG_D190212_S4	4	561.270263671875	2	561.270344	1120.52613	0.22482	0.00012618	0.7003	0.00039306	0.92512	0.00051924	561.2706067762165	21.926	0.88275	21.708	21.114	21.997	-0.21832					35	16	3	0	0	0	0.56527	3	7442	7442;7659;7690		30.637	4.9457	1	6357000	+		33044	11735	20870	20982	31807;31808;31809	31807					-0.029307051986279475
TEAEHGQPRP	10	Unmodified	_TEAEHGQPRP_					0	0	0			REV__ENSG00000122375|ENST00000241891|OPN4	REV__ENSG00000122375|ENST00000241891|OPN4	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	561.270344	1120.52613	0.37113	0.0002083	0.55767	0.000313	0.9288	0.00052131	561.2706735496475	21.896	0.99698	21.897	21.149	22.146	0.00074577	0.12435	-4.9628E-05	NaN	30.637	28	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7953300	+		33045	11735	20870	20982							-0.029307051986279475
TEAEHGQPRP	10	Unmodified	_TEAEHGQPRP_					0	0	0			REV__ENSG00000122375|ENST00000241891|OPN4	REV__ENSG00000122375|ENST00000241891|OPN4	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	561.270344	1120.52613	0.22482	0.00012618	0.7003	0.00039306	0.92512	0.00051924	561.2706067762165	21.926	0.88275	21.708	21.114	21.997	-0.21832	-0.064772	0.00011047	NaN	30.637	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6357000	+		33046	11735	20870	20982							-0.029307051986279475
TEAEMELRLKK	11	Unmodified	_TEAEMELRLKK_					0	0	0			REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1;REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	REV__nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MSMS	HCT116MG_D190212_S4	4	674.3662109375	2	674.368669	1346.72279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.411	1	57.116	56.616	57.616	-0.29465								0	0	0	0.94538	1	21549	21549		8.7454	0.58988	1		+		33047	12100;15746	20871	20983	31810	31810					0.06329338580076183
TEAGAGAVAA	10	Unmodified	_TEAGAGAVAA_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	817.405029296875	1	817.405023	816.397747	0.86857	0.00070997	0.01949	1.5931E-05	0.88806	0.0007259	817.4047723779497	21.828	0.20844	21.828	21.698	21.906	0					6	3	2	0	0	0	0.026842	1	7709	7709		108	53.223	1	13683000			33048	7729	20872	20984	31811	31811					-0.017796404417140366
TEAGAGAVAA	10	Unmodified	_TEAGAGAVAA_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	817.4056396484375	1	817.405023	816.397747	0.91602	0.00074876	0.015666	1.2806E-05	0.93169	0.00076156	817.4049152688665	22.138	0.36406	21.752	21.583	21.947	-0.38503					12	6	3	0	0	0	0.037761	1	7834	7834		96.285	46.352	1	57080000			33049	7729	20872	20984	31812	31812					-0.017796404417140366
TEAGAGAVAA	10	Unmodified	_TEAGAGAVAA_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	817.4047241210938	1	817.405023	816.397747	0.98906	0.00080846	0.057007	4.6598E-05	1.0461	0.00085506	817.4049813353416	21.791	0.5223	21.797	21.629	22.151	0.0062008					15	9	3	0	0	0	0.037761	1	7607	7607		96.285	47.939	1	15486000			33050	7729	20872	20984	31813	31813					-0.017796404417140366
TEAGAGAVAA	10	Unmodified	_TEAGAGAVAA_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	817.4055786132812	1	817.405023	816.397747	0.89497	0.00073156	-0.21299	-0.0001741	0.68198	0.00055746	817.4047636448353	21.93	0.2598	21.711	21.581	21.841	-0.21832					7	4	2	0	0	0	0.17848	1	7626	7626		61.357	23.383	1	3045100			33051	7729	20872	20984	31814	31814					-0.017796404417140366
TEAGIEVQP	9	Unmodified	_TEAGIEVQP_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MSMS	HCT116MG_D190212_S3	3	472.2402648925781	2	472.24019	942.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.93	1	26.76	26.26	27.26	-0.16933								0	0	0	0.59795	1	9683	9683		24.021	0	1		+		33052	14024	20873	20985	31815	31815					-0.007708155817113038
TEAGLLAGVI	10	Unmodified	_TEAGLLAGVI_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MSMS	HCT116MG_D190212_S4	4	472.2753601074219	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.818	1	30.454	29.954	30.954	-0.36416								0	0	0	0.86471	1	11159	11159		20.454	2.3186	1				33053	3900	20874	20986	31816	31816					0.06502938211713172
TEAKPAVVA	9	Unmodified	_TEAKPAVVA_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	HCT116MG_D190212_S1	1	443.2554626464844	2	443.255643	884.496732	0.041835	1.8543E-05	-0.69858	-0.00030965	-0.65674	-0.00029111	443.2554999328666	22.776	0.26071	22.776	22.637	22.898	0					9	4	3	0	0	0	0.090581	1	8091	8091		60.074	27.768	1	8048700			33054	3031	20875	20987	31817	31817					0.049863825231909686
TEAKPAVVA	9	Unmodified	_TEAKPAVVA_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	HCT116MG_D190212_S2	2	443.2557373046875	2	443.255643	884.496732	0.1054	4.6718E-05	0.19085	8.4597E-05	0.29625	0.00013131	443.2556906945198	23.294	0.20769	22.908	22.778	22.986	-0.3852					6	3	2	0	0	0	0.045679	1	8298	8298		76.825	32.966	1	40030000			33055	3031	20875	20987	31818	31818					0.049863825231909686
TEAKPAVVA	9	Unmodified	_TEAKPAVVA_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	HCT116MG_D190212_S3	3	443.25531005859375	2	443.255643	884.496732	0.066123	2.9309E-05	0.62589	0.00027743	0.69201	0.00030674	443.2558579029974	22.64	0.25996	22.621	22.491	22.751	-0.018869					7	4	2	0	0	0	0.071914	1	7970	7970		63.961	25.987	1	8032600			33056	3031	20875	20987	31819	31819					0.049863825231909686
TEALHFVAA	9	Unmodified	_TEALHFVAA_					0	0	0		CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant;ENSG00000125817|ENST00000379751|CENPB	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	479.75311279296875	2	479.753267	957.491981	0.22132	0.00010618	0.34201	0.00016408	0.56334	0.00027026	479.75337914523413	41.211	0.26029	41.211	41.029	41.289	0					7	4	2	0	0	0	0.013464	1	15525	15525		104.8	74.574	1	18324000			33057	400	20876	20988	31820	31820					0.01153498380426754
TEALHFVAA	9	Unmodified	_TEALHFVAA_					0	0	0		CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant;ENSG00000125817|ENST00000379751|CENPB	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	479.7532958984375	2	479.753267	957.491981	0.081851	3.9268E-05	-0.47167	-0.00022629	-0.38982	-0.00018702	479.7530016944376	41.234	0.25598	41.165	41.037	41.293	-0.068199					9	4	3	0	0	0	0.019399	1	15574	15574		97.075	73.926	1	97311000			33058	400	20876	20988	31821	31821					0.01153498380426754
TEALHFVAA	9	Unmodified	_TEALHFVAA_					0	0	0		CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant;ENSG00000125817|ENST00000379751|CENPB	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	479.7532043457031	2	479.753267	957.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.466	1	41.164	40.664	41.664	-0.30185								0	0	0	0.0081784	1	15426	15426		109.63	67.535	1				33059	400	20876	20988	31822	31822					0.01153498380426754
TEALTQAF	8	Unmodified	_TEALTQAF_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	HCT116MG_D190212_S2	2	880.441650390625	1	880.441074	879.433798	0.87864	0.00077359	-0.30378	-0.00026746	0.57486	0.00050613	880.4406984138528	45.219	0.31149	45.127	44.996	45.307	-0.092472					9	5	2	0	0	0	0.23195	1	17243	17243		67.344	33.157	1	28232000			33060	5705	20877	20989	31823	31823					-0.010741832648591298
TEALTQAF	8	Unmodified	_TEALTQAF_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MATCH	HCT116MG_D190212_S4	4		1	880.441074	879.433798	0.86921	0.00076529	-0.4092	-0.00036028	0.46001	0.00040501	880.440650632346	45.542	0.20525	45.169	45.039	45.245	-0.37266	0.021167	-8.0477E-05	NaN	67.344	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2278500			33061	5705	20877	20989							-0.010741832648591298
TEAPPIIF	8	Unmodified	_TEAPPIIF_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	HCT116MG_D190212_S2	2	887.4883422851562	1	887.487296	886.48002	0.94306	0.00083695	0.20082	0.00017823	1.1439	0.0010152	887.4872668816326	56.09	0.30704	55.907	55.745	56.052	-0.18261					14	5	3	0	0	0	0.060038	1	21645	21645		112.56	21.723	1	61225000			33062	2493	20878	20990	31824	31824					0.0322388163724554
TEAPPIIF	8	Unmodified	_TEAPPIIF_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	HCT116MG_D190212_S3	3	887.4880981445312	1	887.487296	886.48002	0.92931	0.00082475	0.23569	0.00020917	1.165	0.0010339	887.4871953613865	56.25	0.31385	55.966	55.784	56.097	-0.28367					12	5	3	0	0	0	0.060038	1	21354	21354		112.56	34.114	1	8098800			33063	2493	20878	20990	31825	31825					0.0322388163724554
TEAPPIIF	8	Unmodified	_TEAPPIIF_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	HCT116MG_D190212_S4	4	887.4884033203125	1	887.487296	886.48002	0.92332	0.00081943	-0.13811	-0.00012257	0.78521	0.00069686	887.4873101534744	56.259	0.21108	55.952	55.831	56.042	-0.30626					6	3	2	0	0	0	0.046433	1	21096	21096		127.54	56.672	1	1971200			33064	2493	20878	20990	31826	31826					0.0322388163724554
TEAPPIIF	8	Unmodified	_TEAPPIIF_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MATCH	HCT116MG_D190212_S1	1		1	887.487296	886.48002	0.74163	0.00065819	0.43583	0.00038679	1.1775	0.001045	887.4870171423977	55.939	0.20422	55.939	55.811	56.015	0	-0.0021588	0.00024092	NaN	127.54	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6854400			33065	2493	20878	20990							0.0322388163724554
TEAPPVPVGC	10	Unmodified	_TEAPPVPVGC_					0	0	0		ENST00000491330.1_1_8:22442376-22443056:+|nuORF	ENST00000491330.1_1_8:22442376-22443056:+|nuORF	ENST00000491330.1_1_8:22442376-22443056:+|nuORF	MSMS	HCT116MG_D190212_S1	1	485.23895263671875	2	485.239135	968.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.381	1	35.381	34.881	35.881	0								0	0	0	0.85468	1	13159	13159		21.747	0.87544	1				33066	8343	20879	20991	31827	31827					-0.02177567591161278
TEAQIKHLA	9	Unmodified	_TEAQIKHLA_					0	0	0		SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7489013671875	2	505.785099	1009.55564	0.47656	0.00024104	-0.84342	-0.00042659	-0.36686	-0.00018555	505.7849168901204	23.708	0.26032	23.325	23.195	23.456	-0.38324					10	4	3	0	0	0	0.030039	2	8457	8457;8490		86.332	37.986	1	10484000			33067	2905	20880	20992	31828;31829	31828					0.05124858817521272
TEAQIKHLA	9	Unmodified	_TEAQIKHLA_					0	0	0		SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	506.24072265625	2	505.785099	1009.55564	0.22524	0.00011392	-0.11685	-5.9099E-05	0.10839	5.4822E-05	505.7848908718008	22.992	0.20798	22.973	22.844	23.051	-0.018869					6	3	2	0	0	0	0.060218	1	8091	8091		72.968	33.011	1	3694200			33068	2905	20880	20992	31830	31830					0.05124858817521272
TEAQIKHLA	9	Unmodified	_TEAQIKHLA_					0	0	0		SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant;SYMPK|p.S1168Pfs*46|1|0.35|ENSG00000125755|chr19:45816037-45816037|G/-|frameshift_variant;ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	SYMPK|p.G1014Afs*4|1|0.35|ENSG00000125755|chr19:45817999-45817999|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	505.785099	1009.55564	0.33954	0.00017173	-0.046537	-2.3538E-05	0.293	0.0001482	506.2865946220177	23.132	0.15636	23.132	23.001	23.158	0	-0.011522	5.5134E-05	NaN	86.332	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2133800			33069	2905	20880	20992							0.05124858817521272
TEAVIHKH	8	Unmodified	_TEAVIHKH_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MSMS	HCT116MG_D190212_S1	1	467.75872802734375	2	467.758884	933.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.105	1	15.105	14.605	15.605	0								0	0	0	0.8837	1	4994	4994		13.508	4.1604	1				33070	4721	20881	20993	31831	31831					0.033803204745595394
TEAVSLSGATP	11	Unmodified	_TEAVSLSGATP_					0	0	0			REV__KIAA1549|p.N577Kfs*17|1|0.09|ENSG00000122778|chr7:138917895-138917896|-/T|frameshift_variant	REV__KIAA1549|p.N577Kfs*17|1|0.09|ENSG00000122778|chr7:138917895-138917896|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	516.7639770507812	2	516.764029	1031.5135	0.15153	7.8306E-05	0.1453	7.5087E-05	0.29683	0.00015339	516.7640141384276	21.523	0.93484	21.139	20.649	21.583	-0.38491					41	17	3	0	0	0	0.43821	1	7550	7550		51.63	3.8811	1	26714000	+		33071	11744	20882	20994	31832	31832					-0.0009916138151311316
TECFFVEP	8	Unmodified	_TECFFVEP_					0	0	0		MCOLN3|p.F321Sfs*24|1|0.23|ENSG00000055732|chr1:85026072-85026072|A/-|frameshift_variant;MCOLN3|p.S471Vfs*3|1|0.31|ENSG00000055732|chr1:85021186-85021186|T/-|frameshift_variant;nc|ENSG00000055732|Q8TDD5-2|MCOLN3;ENSG00000055732|ENST00000370589|MCOLN3	MCOLN3|p.F321Sfs*24|1|0.23|ENSG00000055732|chr1:85026072-85026072|A/-|frameshift_variant	MCOLN3|p.F321Sfs*24|1|0.23|ENSG00000055732|chr1:85026072-85026072|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	486.21356201171875	2	486.212586	970.410619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.086	1	22.087	21.587	22.587	0.00074577								0	0	0	0.8837	1	7730	7730		14.582	0.67564	1				33072	1081	20883	20995	31833	31833					-0.07576945373830313
TEDDRKLAA	9	Unmodified	_TEDDRKLAA_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B;ENST00000593174.5_1_19:13869843-13873879:+|nuORF	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	MULTI-MSMS	HCT116MG_D190212_S1	1	509.76190185546875	2	509.76182	1017.50909	0.33414	0.00017033	-0.59082	-0.00030118	-0.25668	-0.00013085	509.76165933012226	18.474	0.2603	18.474	18.298	18.558	0					8	4	3	0	0	0	0.0059958	1	6356	6356		128.93	75.1	1	6679600			33073	1970	20884	20996	31834	31834					0.001033741955552614
TEDDRKLAA	9	Unmodified	_TEDDRKLAA_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B;ENST00000593174.5_1_19:13869843-13873879:+|nuORF	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	MULTI-MSMS	HCT116MG_D190212_S2	2	509.76190185546875	2	509.76182	1017.50909	0.18678	9.5212E-05	-0.59043	-0.00030098	-0.40365	-0.00020577	509.7619070166535	19.023	0.31288	18.653	18.523	18.836	-0.3695					15	5	4	0	0	0	0.0059958	1	6595	6595		128.93	43.291	1	37262000			33074	1970	20884	20996	31835	31835					0.001033741955552614
TEDELQDK	8	Unmodified	_TEDELQDK_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MSMS	HCT116MG_D190212_S1	1	489.2249755859375	2	489.224736	976.43492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.219	1	19.219	18.719	19.719	0								0	0	0	0.001036	1	6652	6652		122.18	53.074	1			+	33075	549	20885	20997	31836	31836					-0.05424013686604212
TEDLDDTPLT	10	Unmodified	_TEDLDDTPLT_					0	0	0		ENST00000570041.1_2_16:53532500-53534232:-|nuORF	ENST00000570041.1_2_16:53532500-53534232:-|nuORF	ENST00000570041.1_2_16:53532500-53534232:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	560.2931518554688	2	560.256234	1118.49791	0.43879	0.00024583	0.46665	0.00026145	0.90544	0.00050728	560.2563392227397	27.263	0.67702	27.094	26.651	27.328	-0.16933					15	12	2	0	0	0	0.27023	1	9885	9885		19.257	0	1	8419400			33076	8885	20886	20998	31837	31837					-0.05659492689233048
TEDRRAFAA	9	Unmodified	_TEDRRAFAA_					0	0	0		CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	518.7621459960938	2	518.762155	1035.50976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.634	1	22.249	21.749	22.749	-0.3852								0	0	0	0.1947	1	8028	8028		47.749	15.443	1				33077	312	20887	20999	31838	31838					-0.006577863647180493
TEDRRAFAA	9	Unmodified	_TEDRRAFAA_					0	0	0		CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.23046875	2	518.762155	1035.50976	0.26839	0.00013923	0.77776	0.00040347	1.0461	0.0005427	518.7623872630363	21.724	0.47297	21.742	21.483	21.956	0.018446					16	8	3	0	0	0	0.17558	1	7578	7578		34.402	20.496	1	8108600			33078	312	20887	20999	31839	31839					-0.006577863647180493
TEDRRAFAA	9	Unmodified	_TEDRRAFAA_					0	0	0		CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.Q902Hfs*2|1|0.42|ENSG00000084774|chr2:27232507-27232508|AG/-|frameshift_variant;CAD|p.Q1172Tfs*37|1|0.41|ENSG00000084774|chr2:27234113-27234114|-/C|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	518.7620849609375	2	518.762155	1035.50976	0.3036	0.0001575	0.28829	0.00014956	0.5919	0.00030705	518.7623084956106	22.141	0.25967	21.913	21.728	21.988	-0.22777					9	4	3	0	0	0	0.37539	1	7696	7696		24.021	0.87215	1	3811300			33079	312	20887	20999	31840	31840					-0.006577863647180493
TEDRRQAQ	8	Unmodified	_TEDRRQAQ_					0	0	0			REV__ENST00000341853.5_1_15:100333036-100340296:-|nuORF	REV__ENST00000341853.5_1_15:100333036-100340296:-|nuORF	MSMS	HCT116MG_D190212_S4	4	502.24884033203125	2	502.249412	1002.48427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.848	1	33.464	32.964	33.964	-0.38426								0	0	0	0.8837	1	12336	12336		14.838	4.0143	1		+		33080	14977	20888	21000	31841	31841					-0.01687260887138109
TEEALHASH	9	Unmodified	_TEEALHASH_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF;NDUFA13|p.G139S|1|0.16|ENSG00000186010|chr19:19528106-19528106|G/A|missense_variant	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	HCT116MG_D190212_S2	2	497.73358154296875	2	497.733063	993.451573	0.39744	0.00019782	-0.306	-0.0001523	0.091445	4.5515E-05	497.73312027695215	16.988	0.31236	16.639	16.405	16.717	-0.34933					7	5	2	0	0	0	0.010834	1	5768	5768		111.29	71.33	1	7025800			33081	5865	20889	21001	31842	31842					-0.04541468010006611
TEEDETGHGCG	11	Unmodified	_TEEDETGHGCG_					0	0	0			REV__nc|ENSG00000171649|Q3SY52-2|ZIK1	REV__nc|ENSG00000171649|Q3SY52-2|ZIK1	MULTI-MSMS	HCT116MG_D190212_S3	3	567.7047729492188	2	567.703842	1133.39313	0.31826	0.00018068	2.5141	0.0014272	2.8323	0.0016079	567.7048942045374	16.671	0.36416	16.756	16.601	16.965	0.084953					11	6	2	0	0	0	0.74191	1	5573	5573		4.897	0.141	1	1934400	+		33082	13354	20890	21002	31843	31843					-0.16822937437427754
TEEDIHRAF	9	Unmodified	_TEEDIHRAF_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9;SERPINB9|p.S72L|1|0.25|ENSG00000170542|chr6:2896144-2896144|G/A|missense_variant	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	HCT116MG_D190212_S3	3	559.2675170898438	2	559.26727	1116.51999	0.49357	0.00027604	0.082888	4.6357E-05	0.57646	0.0003224	559.2672073670798	33.318	0.19312	33.028	32.955	33.148	-0.29013					7	4	2	0	0	0	0.16144	1	12242	12242		46.021	13.715	1	15676000			33083	5137	20891	21003	31844	31844					-0.0336122343014722
TEEDKKNL	8	Unmodified	_TEEDKKNL_					0	0	0		ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MULTI-MSMS	HCT116MG_D190212_S2	2	488.7512512207031	2	488.750921	975.48729	0.52301	0.00025562	-0.54473	-0.00026624	-0.021719	-1.0615E-05	488.7505225539482	27.404	0.25779	27.062	26.881	27.139	-0.34201					7	4	2	0	0	0	0.6854	1	9968	9968		24.674	0	1	22505000			33084	6161	20892	21004	31845	31845					-0.0014343055299832486
TEEDLAGD	8	Unmodified	_TEEDLAGD_					0	0	0		ENSG00000168077|ENST00000301904|SCARA3;nc|ENSG00000168077|Q6AZY7-2|SCARA3	ENSG00000168077|ENST00000301904|SCARA3	ENSG00000168077|ENST00000301904|SCARA3	MULTI-MSMS	HCT116MG_D190212_S3	3	849.348388671875	1	849.347233	848.339957	0.73428	0.00062366	0.34621	0.00029406	1.0805	0.00091771	849.3478172481883	23.554	0.36477	23.514	23.343	23.708	-0.03968					8	6	2	0	0	0	0.21487	1	8335	8335		70.716	7.1527	1	2818500			33085	4981	20893	21005	31846	31846					-0.09027947157790095
TEEEKFYR	8	Unmodified	_TEEEKFYR_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	551.262939453125	2	551.264196	1100.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.903	1	20.937	20.437	21.437	0.034473								0	0	0	0.8837	1	7256	7256		14.582	1.0738	1				33086	741	20894	21006	31847	31847					-0.03239741661673179
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S1	1	548.269775390625	2	548.269478	1094.5244	0.3756	0.00020593	0.12452	6.827E-05	0.50012	0.0002742	548.2695070543022	19.469	0.36475	19.469	19.339	19.704	0					16	6	4	0	0	0	0.0035136	1	6754	6754		168.54	110.82	1	93130000			33087	4928	20895	21007	31848	31848					-0.019077590072356543
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S1	1	365.8487548828125	3	365.848744	1094.5244	-0.23636	-8.6471E-05	-0.084027	-3.0741E-05	-0.32039	-0.00011721	365.8487099383907	19.469	0.26036	19.469	19.339	19.6	0					11	4	3	0	0	0	0.063511	1	6760	6760		53.404	26.181	1	17520000			33088	4928	20895	21007	31849	31849					-0.019077590072356543
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S2	2	548.2695922851562	2	548.269478	1094.5244	0.3454	0.00018938	-0.090179	-4.9442E-05	0.25523	0.00013993	548.2694760207535	20.114	0.62987	19.739	19.558	20.188	-0.37503					36	11	5	0	0	0	0.0035136	2	6994	6994;6999		168.54	112.36	1	960650000			33089	4928	20895	21007	31850;31851	31850					-0.019077590072356543
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S2	2	365.8482360839844	3	365.848744	1094.5244	-0.29166	-0.0001067	0.0085063	3.112E-06	-0.28316	-0.00010359	365.84868759405714	20.114	0.41617	19.739	19.558	19.974	-0.37503					21	7	4	0	0	0	0.030723	1	7009	7009		69.338	42.115	1	176440000			33090	4928	20895	21007	31852	31852					-0.019077590072356543
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S2	2	1095.5322265625	1	1095.53168	1094.5244	0.57025	0.00062472	-0.17428	-0.00019093	0.39597	0.00043379	1095.5315645505827	20.114	0.20738	19.739	19.61	19.817	-0.37503					9	3	3	0	0	0	0.00046881	1	7020	7020		195.45	149.75	1	31023000			33091	4928	20895	21007	31853	31853					-0.019077590072356543
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S3	3	548.2695922851562	2	548.269478	1094.5244	0.39298	0.00021546	-0.0022437	-1.2301E-06	0.39073	0.00021423	548.2694436009881	19.143	0.98906	19.212	19.031	20.02	0.069159					41	18	5	0	0	0	0.00046881	1	6526	6526		195.45	130.22	1	297520000			33092	4928	20895	21007	31854	31854					-0.019077590072356543
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S3	3	365.84844970703125	3	365.848744	1094.5244	-0.12233	-4.4753E-05	-0.12128	-4.4368E-05	-0.2436	-8.9122E-05	365.8486397429532	19.144	0.57236	19.213	19.031	19.603	0.069159					27	10	4	0	0	0	0.023938	1	6532	6532		74.2	33.96	1	89579000			33093	4928	20895	21007	31855	31855					-0.019077590072356543
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S3	3	1095.5323486328125	1	1095.53168	1094.5244	0.35437	0.00038823	-0.02872	-3.1464E-05	0.32565	0.00035676	1095.5316798267133	19.092	0.25977	19.161	19.083	19.343	0.069159					7	4	2	0	0	0	0.00086357	1	6558	6558		193.29	131.94	1	4031000			33094	4928	20895	21007	31856	31856					-0.019077590072356543
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S4	4	365.848876953125	3	365.848744	1094.5244	-0.020462	-7.486E-06	-0.1065	-3.8962E-05	-0.12696	-4.6448E-05	365.84858244836175	19.55	0.45821	19.356	19.174	19.632	-0.19367					19	8	4	0	0	0	0.063511	1	6635	6635		61.602	28.157	1	23003000			33095	4928	20895	21007	31857	31857					-0.019077590072356543
TEEEKNFKA	9	Unmodified	_TEEEKNFKA_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	HCT116MG_D190212_S4	4	548.2697143554688	2	548.269478	1094.5244	0.53547	0.00029358	-0.031988	-1.7538E-05	0.50348	0.00027604	548.2693992152894	19.55	0.56215	19.356	19.174	19.736	-0.19367					27	10	4	0	0	0	0.0029864	1	6638	6638		181.69	123.97	1	119860000			33096	4928	20895	21007	31858	31858					-0.019077590072356543
TEEKIREY	8	Unmodified	_TEEKIREY_					0	0	0		ENST00000406003.2_1_12:10264431-10264902:+|nuORF;nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2723388671875	2	534.272021	1066.52949	0.36909	0.00019719	-0.18754	-0.0001002	0.18155	9.6995E-05	534.2718178567735	21.942	0.31272	21.557	21.427	21.739	-0.38503					8	5	2	0	0	0	0.25533	1	7774	7774		63.227	17.488	1	25127000			33097	6148	20896	21008	31859	31859					-0.0011145514461077255
TEEKIREY	8	Unmodified	_TEEKIREY_					0	0	0		ENST00000406003.2_1_12:10264431-10264902:+|nuORF;nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	534.272021	1066.52949	0.40469	0.00021621	0.029842	1.5944E-05	0.43453	0.00023216	534.2720868828254	21.359	0.21176	21.359	21.226	21.437	0	-0.062416	0.00022389	NaN	63.227	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3545100			33098	6148	20896	21008							-0.0011145514461077255
TEEKIREY	8	Unmodified	_TEEKIREY_					0	0	0		ENST00000406003.2_1_12:10264431-10264902:+|nuORF;nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	534.272021	1066.52949	0.46589	0.00024891	-1.2171	-0.00065025	-0.75119	-0.00040134	534.2715423940309	21.566	0.25931	21.348	21.218	21.478	-0.21832	-0.073274	-0.0011085	NaN	63.227	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1074500			33099	6148	20896	21008							-0.0011145514461077255
TEELPSSQL	9	Unmodified	_TEELPSSQL_					0	0	0		ENSG00000186496|ENST00000589332|ZNF396;nc|ENSG00000186496|Q96N95-2|ZNF396;ZNF396|p.F323*|1|0.54|ENSG00000186496|chr18:35369254-35369255|AA/-|frameshift_variant;nc|ENSG00000186496|Q96N95-3|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	ENSG00000186496|ENST00000589332|ZNF396	MSMS	HCT116MG_D190212_S4	4	502.2508239746094	2	502.250754	1002.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.508	1	38.126	37.626	38.626	-0.38163								0	0	0	0.74436	1	14115	14115		16.942	0	1				33100	5891	20897	21009	31860	31860					-0.01418850272830241
TEENDSEK	8	Unmodified	_TEENDSEK_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1;BOD1L1|p.P2199Qfs*25|1|0.12|ENSG00000038219|chr4:13600304-13600304|G/-|frameshift_variant	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	HCT116MG_D190212_S3	3	476.2005310058594	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.643	1	52.336	51.836	52.836	-0.30639								0	0	0	0.8837	1	19905	19905		7.2892	0	1				33101	991	20898	21010	31861	31861					-0.09429177100366815
TEENKSFSA	9	Unmodified	_TEENKSFSA_					0	0	0		FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant;FAM111B|p.N499Tfs*10|1|0.11|ENSG00000189057|chr11:59125589-59125589|A/-|frameshift_variant;ENSG00000189057|ENST00000343597|FAM111B;ENST00000528234.5_1_11:58877098-58877212:+|nuORF;FAM111B|p.Q276Hfs*6|1|0.07|ENSG00000189057|chr11:59124924-59124925|-/T|frameshift_variant;FAM111B|p.I283Lfs*16|1|0.32|ENSG00000189057|chr11:59124938-59124938|A/-|frameshift_variant	FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant	FAM111B|p.I433Vfs*2|1|0.04|ENSG00000189057|chr11:59125393-59125394|-/GTTTG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	506.7328796386719	2	506.732729	1011.4509	0.25824	0.00013086	-0.10453	-5.2968E-05	0.15371	7.789E-05	506.73270219520793	22.175	0.31237	22.176	21.99	22.302	0.00074577					9	5	3	0	0	0	0.094138	2	7773	7740;7773		59.368	17.413	1	5463600			33102	6016	20899	21011	31862;31863	31863					-0.054363074497018715
TEEPRHYRI	9	Unmodified	_TEEPRHYRI_					0	0	0			REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	400.8746032714844	3	400.875516	1199.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.728	1	10.728	10.228	11.228	0								0	0	0	0.77008	1	3313	3313		0.26902	0	1		+		33103	10105	20900	21012	31864	31864					0.01290147106465156
TEEPRHYRI	9	Unmodified	_TEEPRHYRI_					0	0	0			REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	400.8623046875	3	400.875516	1199.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.506	1	11.506	11.006	12.006	0								0	0	0	0.77008	1	3628	3628		0.26902	0	1		+		33104	10105	20900	21012	31865	31865					0.01290147106465156
TEEQCPAGTTP	11	Unmodified	_TEEQCPAGTTP_					0	0	0			REV__ENST00000357166.10_1_X:128976028-128977851:-|nuORF	REV__ENST00000357166.10_1_X:128976028-128977851:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	567.2427978515625	2	567.242603	1132.47065	0.34174	0.00019385	0.21171	0.00012009	0.55345	0.00031394	567.2424802615949	20.114	0.36345	19.739	19.506	19.869	-0.37503					10	6	3	0	0	0	0.57136	1	7023	7023		38.615	0.43918	1	20036000	+		33105	15052	20901	21013	31866	31866					-0.09028299501255788
TEEQCPAGTTP	11	Unmodified	_TEEQCPAGTTP_					0	0	0			REV__ENST00000357166.10_1_X:128976028-128977851:-|nuORF	REV__ENST00000357166.10_1_X:128976028-128977851:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	567.242603	1132.47065	0.22347	0.00012676	0.36357	0.00020623	0.58703	0.00033299	567.242768355715	19.488	0.15609	19.488	19.391	19.548	0	-0.12569	3.3772E-05	NaN	38.615	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1879200	+		33106	15052	20901	21013							-0.09028299501255788
TEEQCPAGTTP	11	Unmodified	_TEEQCPAGTTP_					0	0	0			REV__ENST00000357166.10_1_X:128976028-128977851:-|nuORF	REV__ENST00000357166.10_1_X:128976028-128977851:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	567.242603	1132.47065	0.34174	0.00019385	0.21171	0.00012009	0.55345	0.00031394	567.2424802615949	20.114	0.36345	19.739	19.506	19.869	-0.37503	0.12569	-0.00013851	NaN	38.615	10	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20036000	+		33107	15052	20901	21013							-0.09028299501255788
TEEQPVASWA	10	Unmodified	_TEEQPVASWA_					0	0	0		ENSG00000169220|ENST00000408923|RGS14	ENSG00000169220|ENST00000408923|RGS14	ENSG00000169220|ENST00000408923|RGS14	MSMS	HCT116MG_D190212_S1	1	559.2607421875	2	559.261653	1116.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.529	1	19.529	19.029	20.029	0								0	0	0	0.42226	1	6777	6777		51.63	3.284	1				33108	5058	20902	21014	31867	31867					-0.044840455242592725
TEEQPVASWA	10	Unmodified	_TEEQPVASWA_					0	0	0		ENSG00000169220|ENST00000408923|RGS14	ENSG00000169220|ENST00000408923|RGS14	ENSG00000169220|ENST00000408923|RGS14	MULTI-MSMS	HCT116MG_D190212_S4	4	559.2605590820312	2	559.261653	1116.50875	0.23802	0.00013312	-1.9004	-0.0010628	-1.6624	-0.00092971	559.2602090826426	19.55	0.25999	19.356	19.174	19.434	-0.19367					7	4	2	0	0	0	0.37752	1	6646	6646		43.772	5.7984	1	4981300			33109	5058	20902	21014	31868	31868					-0.044840455242592725
TEEQPVASWA	10	Unmodified	_TEEQPVASWA_					0	0	0		ENSG00000169220|ENST00000408923|RGS14	ENSG00000169220|ENST00000408923|RGS14	ENSG00000169220|ENST00000408923|RGS14	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	559.261653	1116.50875	0.3534	0.00019764	-2.6368	-0.0014747	-2.2835	-0.001277	559.2602379048542	19.144	0.2077	19.213	19.083	19.291	0.069159	-0.071683	-4.9711E-05	NaN	43.772	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3874500			33110	5058	20902	21014							-0.044840455242592725
TEESKSSHHL	10	Unmodified	_TEESKSSHHL_					0	0	0		NAA25|p.R318H|1|0.3|ENSG00000111300|chr12:112071978-112071978|C/T|missense_variant	NAA25|p.R318H|1|0.3|ENSG00000111300|chr12:112071978-112071978|C/T|missense_variant	NAA25|p.R318H|1|0.3|ENSG00000111300|chr12:112071978-112071978|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	577.7760620117188	2	577.775459	1153.53637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.877	1	26.524	26.024	27.024	-0.35254								0	0	0	0.53988	1	9742	9742		45.7	7.524	1				33111	9356	20903	21015	31869	31869					-0.0342614226403839
TEETLKESF	9	Unmodified	_TEETLKESF_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;NCL|p.D593G|1|0.32|ENSG00000115053|chr2:231456064-231456064|T/C|missense_variant	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MSMS	HCT116MG_D190212_S1	1	542.26416015625	2	542.263862	1082.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.142	1	35.142	34.642	35.642	0								0	0	0	0.025932	1	13062	13062		86.332	34.702	1				33112	2442	20904	21016	31870	31870					-0.02478581101377131
TEETLKESF	9	Unmodified	_TEETLKESF_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;NCL|p.D593G|1|0.32|ENSG00000115053|chr2:231456064-231456064|T/C|missense_variant	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2643432617188	2	542.263862	1082.51317	0.50957	0.00027632	0.011922	6.465E-06	0.52149	0.00028278	542.2638312948843	35.153	0.25888	34.994	34.813	35.072	-0.15834					12	4	3	0	0	0	0.0015154	1	13090	13090		189.73	60.799	1	51779000			33113	2442	20904	21016	31871	31871					-0.02478581101377131
TEETLKESF	9	Unmodified	_TEETLKESF_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;NCL|p.D593G|1|0.32|ENSG00000115053|chr2:231456064-231456064|T/C|missense_variant	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MSMS	HCT116MG_D190212_S3	3	542.2643432617188	2	542.263862	1082.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.356	1	35.057	34.557	35.557	-0.29922								0	0	0	4.4445E-08	1	13047	13047		160.69	57.27	1				33114	2442	20904	21016	31872	31872					-0.02478581101377131
TEFAGKGLRF	10	Unmodified	_TEFAGKGLRF_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MSMS	HCT116MG_D190212_S1	1	563.305908203125	2	563.306198	1124.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.014	1	40.014	39.514	40.514	0								0	0	0	0.08611	1	15027	15027		85.642	43.547	1				33115	1707	20905	21017	31873	31873					0.04052834225922197
TEFAGKGLRF	10	Unmodified	_TEFAGKGLRF_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MSMS	HCT116MG_D190212_S2	2	563.3059692382812	2	563.306198	1124.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.007	1	39.934	39.434	40.434	-0.072838								0	0	0	0.082871	1	15075	15075		86.332	42.474	1				33116	1707	20905	21017	31874	31874					0.04052834225922197
TEFDSTVTH	9	Unmodified	_TEFDSTVTH_					0	0	0		nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1;nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-2|BARD1	nc|ENSG00000138376|Q99728-2|BARD1	MULTI-MSMS	HCT116MG_D190212_S1	1	518.7329711914062	2	518.732729	1035.4509	0.52662	0.00027318	0.16589	8.6055E-05	0.69252	0.00035923	518.7326182657656	26.142	0.31309	26.142	25.98	26.293	0					13	5	4	0	0	0	0.023611	1	9434	9434		92.822	56.778	1	10763000			33117	3552	20906	21018	31875	31875					-0.06540307449699867
TEFDSTVTH	9	Unmodified	_TEFDSTVTH_					0	0	0		nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1;nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-2|BARD1	nc|ENSG00000138376|Q99728-2|BARD1	MULTI-MSMS	HCT116MG_D190212_S2	2	518.7330322265625	2	518.732729	1035.4509	0.23045	0.00011954	0.0076626	3.9748E-06	0.23811	0.00012351	518.7327245950107	26.445	0.36286	26.084	25.921	26.284	-0.36164					14	6	3	0	0	0	0.0054498	1	9580	9580		133.7	76.231	1	38954000			33118	3552	20906	21018	31876	31876					-0.06540307449699867
TEFDSTVTH	9	Unmodified	_TEFDSTVTH_					0	0	0		nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1;nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-2|BARD1	nc|ENSG00000138376|Q99728-2|BARD1	MULTI-MSMS	HCT116MG_D190212_S3	3	518.7327270507812	2	518.732729	1035.4509	0.38617	0.00020032	-0.13746	-7.1307E-05	0.24871	0.00012901	518.7327607249908	26.326	0.31266	26.177	25.994	26.307	-0.14924					9	5	2	0	0	0	0.027492	1	9446	9446		88.904	46.809	1	9695500			33119	3552	20906	21018	31877	31877					-0.06540307449699867
TEFDSTVTH	9	Unmodified	_TEFDSTVTH_					0	0	0		nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1;nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-2|BARD1	nc|ENSG00000138376|Q99728-2|BARD1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	518.732729	1035.4509	0.19009	9.8606E-05	0.45376	0.00023538	0.64385	0.00033398	519.2345526858198	26.486	0.156	26.185	26.078	26.234	-0.30087	0.03803	0.00045864	NaN	133.7	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1287700			33120	3552	20906	21018							-0.06540307449699867
TEFNGIRDY	9	Unmodified	_TEFNGIRDY_					0	0	0		ENSG00000145569|ENST00000274217|OTULINL	ENSG00000145569|ENST00000274217|OTULINL	ENSG00000145569|ENST00000274217|OTULINL	MSMS	HCT116MG_D190212_S3	3	557.76220703125	2	557.76182	1113.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.815	1	36.514	36.014	37.014	-0.30113								0	0	0	0.33245	1	13616	13616		47.594	15.477	1				33121	3915	20907	21019	31878	31878					-0.043126258044367205
TEFPGVVV	8	Unmodified	_TEFPGVVV_					0	0	0		nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8;ENST00000521583.5_1_5:154238316-154247291:+|nuORF	nc|ENSG00000155508|Q9UFF9-3|CNOT8	nc|ENSG00000155508|Q9UFF9-3|CNOT8	MULTI-MSMS	HCT116MG_D190212_S1	1	847.455810546875	1	847.455996	846.448719	0.72284	0.00061258	0.16198	0.00013727	0.88482	0.00074985	847.455790070706	51.995	0.72439	51.995	51.4	52.125	0					17	13	2	0	0	0	0.11846	1	19848	19848		90.836	34.295	1	10284000			33122	4253	20908	21020	31879	31879					0.019353086031514977
TEFPGVVV	8	Unmodified	_TEFPGVVV_					0	0	0		nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8;ENST00000521583.5_1_5:154238316-154247291:+|nuORF	nc|ENSG00000155508|Q9UFF9-3|CNOT8	nc|ENSG00000155508|Q9UFF9-3|CNOT8	MULTI-MSMS	HCT116MG_D190212_S2	2	847.45654296875	1	847.455996	846.448719	0.89085	0.00075496	0.17609	0.00014923	1.0669	0.00090419	847.4560459305792	51.993	1.4947	51.809	51.115	52.61	-0.18369					61	28	3	0	0	0	0.1757	2	19802	19802;20027		78.445	35.477	1	52444000			33123	4253	20908	21020	31880;31881	31880					0.019353086031514977
TEFPGVVV	8	Unmodified	_TEFPGVVV_					0	0	0		nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8;ENST00000521583.5_1_5:154238316-154247291:+|nuORF	nc|ENSG00000155508|Q9UFF9-3|CNOT8	nc|ENSG00000155508|Q9UFF9-3|CNOT8	MULTI-MSMS	HCT116MG_D190212_S3	3	847.4566040039062	1	847.455996	846.448719	0.75653	0.00064113	0.41222	0.00034934	1.1688	0.00099047	847.4563416706994	52.303	1.3308	51.993	51.332	52.663	-0.30927					38	25	2	0	0	0	0.1757	2	19613	19613;19844		78.445	35.477	1	10253000			33124	4253	20908	21020	31882;31883	31882					0.019353086031514977
TEFPGVVV	8	Unmodified	_TEFPGVVV_					0	0	0		nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8;ENST00000521583.5_1_5:154238316-154247291:+|nuORF	nc|ENSG00000155508|Q9UFF9-3|CNOT8	nc|ENSG00000155508|Q9UFF9-3|CNOT8	MULTI-MSMS	HCT116MG_D190212_S4	4	847.4580078125	1	847.455996	846.448719	0.67431	0.00057145	0.18705	0.00015852	0.86136	0.00072996	847.4565249653189	52.251	0.519	51.905	51.725	52.244	-0.34538					13	9	2	0	0	0	0.1757	2	19498	19498;19529		78.445	35.477	1	3749200			33125	4253	20908	21020	31884;31885	31884					0.019353086031514977
TEFPNFKY	8	Unmodified	_TEFPNFKY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MSMS	HCT116MG_D190212_S2	2	523.2529296875	2	523.2531	1044.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.436	1	46.325	45.825	46.825	-0.11121								0	0	0	0.29906	1	17687	17687		54.774	26.287	1				33126	3183	20909	21021	31886	31886					-0.02881921339417204
TEFPNFKY	8	Unmodified	_TEFPNFKY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-SECPEP	HCT116MG_D190212_S2	2	523.7620239257812	2	523.2531	1044.49165	0.36935	0.00019326	-0.27561	-0.00014422	0.093737	4.9048E-05	523.2528103625559	45.907	0.92535	45.806	45.402	46.327	-0.1014					35	17	3	0	0	0	0.10403	1	17423	17423		78.149	42.105	1	49146000			33127	3183	20909	21021	31887	31887					-0.02881921339417204
TEFPNFKY	8	Unmodified	_TEFPNFKY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MSMS	HCT116MG_D190212_S3	3	523.2535400390625	2	523.2531	1044.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.256	1	45.943	45.443	46.443	-0.31237								0	0	0	0.17326	1	17338	17338		71.134	25.113	1				33128	3183	20909	21021	31888	31888					-0.02881921339417204
TEFTIEDF	8	Unmodified	_TEFTIEDF_					0	0	0		ENSG00000167770|ENST00000538426|OTUB1;nc|ENSG00000167770|Q96FW1-2|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	ENSG00000167770|ENST00000538426|OTUB1	MULTI-MSMS	HCT116MG_D190212_S3	3	1001.4468994140625	1	1001.44622	1000.43894	0.64751	0.00064845	0.44613	0.00044678	1.0936	0.0010952	1001.4466498707194	55.989	0.20888	55.701	55.571	55.779	-0.28773					5	3	2	0	0	0	0.21487	1	21247	21247		70.716	44.374	1	4588800			33129	4955	20910	21022	31889	31889					-0.06125924192895127
TEFYHVPTH	9	Unmodified	_TEFYHVPTH_					0	0	0		PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant;nc|ENSG00000163110|Q96HC4-3|PDLIM5;nc|ENSG00000163110|Q96HC4-2|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant	PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	565.7675170898438	2	565.766906	1129.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.605	1	30.605	30.105	31.105	0								0	0	0	3.992E-05	1	11231	11231		144.35	100.58	1				33130	4581	20911	21023	31890	31890					-0.04032018079192312
TEFYHVPTH	9	Unmodified	_TEFYHVPTH_					0	0	0		PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant;nc|ENSG00000163110|Q96HC4-3|PDLIM5;nc|ENSG00000163110|Q96HC4-2|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant	PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	565.7669677734375	2	565.766906	1129.51926	0.32563	0.00018423	0.19216	0.00010872	0.51779	0.00029295	565.7666839715687	30.842	0.31134	30.575	30.404	30.716	-0.26704					13	5	4	0	0	0	0.020353	1	11372	11372		96.111	64.843	1	27103000			33131	4581	20911	21023	31891	31891					-0.04032018079192312
TEFYHVPTH	9	Unmodified	_TEFYHVPTH_					0	0	0		PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant;nc|ENSG00000163110|Q96HC4-3|PDLIM5;nc|ENSG00000163110|Q96HC4-2|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5	PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant	PDLIM5|p.R246C|1|0.16|ENSG00000163110|chr4:94585590-94585590|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	378.169189453125	3	377.513696	1129.51926	-0.28335	-0.00010697	0.095132	3.5914E-05	-0.18822	-7.1056E-05	377.51353059565093	30.831	0.20713	30.564	30.456	30.663	-0.26704					6	3	2	0	0	0	0.21112	1	11343	11343		31.268	23.659	1	8312400			33132	4581	20911	21023	31892	31892					-0.04032018079192312
TEGAAGFA	8	Unmodified	_TEGAAGFA_					0	0	0			REV__ENST00000497313.5_1_21:34903034-34906961:-|nuORF	REV__ENST00000497313.5_1_21:34903034-34906961:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	723.3314208984375	1	723.330795	722.323519	0.71517	0.0005173	0.30928	0.00022371	1.0244	0.00074102	723.3308867760156	28.941	0.36452	28.719	28.473	28.838	-0.22196					10	6	2	0	0	0	0.77285	1	10488	10488		14.582	2.0501	1	4250600	+		33133	12795	20912	21024	31893	31893					-0.04874983533238719
TEGARKKK	8	Unmodified	_TEGARKKK_					0	0	0		ENSG00000150873|ENST00000381585|C2orf50	ENSG00000150873|ENST00000381585|C2orf50	ENSG00000150873|ENST00000381585|C2orf50	MSMS	HCT116MG_D190212_S4	4	459.2801208496094	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.803	1	59.532	59.032	60.032	-0.27156								0	0	0	0.8837	1	22515	22515		0.79363	0	1				33134	4095	20913	21025	31894	31894					0.08380295882955124
TEGIVSTF	8	Unmodified	_TEGIVSTF_					0	0	0		nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	MULTI-MSMS	HCT116MG_D190212_S3	3	853.4298095703125	1	853.430175	852.422899	0.82265	0.00070208	-0.10034	-8.5634E-05	0.72231	0.00061644	853.4298597211915	46.79	0.41702	46.476	46.281	46.698	-0.31405					14	7	3	0	0	0	0.14246	1	17550	17550		85.357	7.3724	1	13655000			33135	3284	20914	21026	31895	31895					-0.009215856391392663
TEGIVSTF	8	Unmodified	_TEGIVSTF_					0	0	0		nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	MULTI-MSMS	HCT116MG_D190212_S4	4	853.4310302734375	1	853.430175	852.422899	0.83098	0.00070918	-0.28105	-0.00023986	0.54992	0.00046932	853.4301841944366	46.863	0.2075	46.491	46.38	46.588	-0.37134					6	3	2	0	0	0	0.12463	1	17334	17334		89.427	15.03	1	3175600			33136	3284	20914	21026	31896	31896					-0.009215856391392663
TEGKRNSQQP	10	Unmodified	_TEGKRNSQQP_					0	0	0			REV__ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant	REV__ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	572.7893676757812	2	572.788901	1143.56325	0.46053	0.00026379	-1.1512	-0.00065939	-0.69065	-0.0003956	572.7884970147827	17.959	0.26078	17.959	17.828	18.089	0					5	4	2	0	0	0	0.77749	1	6176	6176		13.906	0.86358	1	2074300	+		33137	9938	20915	21027	31897	31897					-0.002790336528505577
TEGSHFVEA	9	Unmodified	_TEGSHFVEA_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;MFN1|p.F28L|1|0.06|ENSG00000171109|chr3:179348933-179348933|T/C|missense_variant;MFN1|p.H221Tfs*3|1|0.27|ENSG00000171109|chr3:179365127-179365127|T/-|frameshift_variant;nc|ENSG00000171109|Q8IWA4-2|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S1	1	488.7223205566406	2	488.722164	975.429775	0.27067	0.00013228	0.12338	6.0301E-05	0.39405	0.00019258	488.72216026901003	27.011	0.46859	27.011	26.813	27.282	0					18	8	3	0	0	0	0.0066233	1	9778	9778		123.45	68.677	1	87850000			33138	5176	20916	21028	31898	31898					-0.05892272758569561
TEGSHFVEA	9	Unmodified	_TEGSHFVEA_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;MFN1|p.F28L|1|0.06|ENSG00000171109|chr3:179348933-179348933|T/C|missense_variant;MFN1|p.H221Tfs*3|1|0.27|ENSG00000171109|chr3:179365127-179365127|T/-|frameshift_variant;nc|ENSG00000171109|Q8IWA4-2|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S1	1	976.43603515625	1	976.437051	975.429775	0.58612	0.00057231	-0.54413	-0.00053131	0.041983	4.0994E-05	976.4362804231878	27.011	0.20782	27.011	26.918	27.125	0					6	3	2	0	0	0	0.11023	1	9813	9813		56.177	20.133	1	6111500			33139	5176	20916	21028	31899	31899					-0.05892272758569561
TEGSHFVEA	9	Unmodified	_TEGSHFVEA_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;MFN1|p.F28L|1|0.06|ENSG00000171109|chr3:179348933-179348933|T/C|missense_variant;MFN1|p.H221Tfs*3|1|0.27|ENSG00000171109|chr3:179365127-179365127|T/-|frameshift_variant;nc|ENSG00000171109|Q8IWA4-2|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S2	2	488.7222595214844	2	488.722164	975.429775	0.47008	0.00022974	0.2141	0.00010464	0.68419	0.00033438	488.72223008742407	27.455	0.51594	27.113	26.933	27.449	-0.34201					26	9	4	0	0	0	0.0051486	1	9974	9974		136.33	81.56	1	286500000			33140	5176	20916	21028	31900	31900					-0.05892272758569561
TEGSHFVEA	9	Unmodified	_TEGSHFVEA_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;MFN1|p.F28L|1|0.06|ENSG00000171109|chr3:179348933-179348933|T/C|missense_variant;MFN1|p.H221Tfs*3|1|0.27|ENSG00000171109|chr3:179365127-179365127|T/-|frameshift_variant;nc|ENSG00000171109|Q8IWA4-2|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S2	2	976.4371948242188	1	976.437051	975.429775	0.90953	0.0008881	-0.13288	-0.00012975	0.77665	0.00075835	976.4368138377804	27.472	0.25794	27.13	26.985	27.243	-0.34201					10	4	3	0	0	0	0.023938	1	9982	9982		92.491	56.447	1	34361000			33141	5176	20916	21028	31901	31901					-0.05892272758569561
TEGSHFVEA	9	Unmodified	_TEGSHFVEA_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;MFN1|p.F28L|1|0.06|ENSG00000171109|chr3:179348933-179348933|T/C|missense_variant;MFN1|p.H221Tfs*3|1|0.27|ENSG00000171109|chr3:179365127-179365127|T/-|frameshift_variant;nc|ENSG00000171109|Q8IWA4-2|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S3	3	488.7223205566406	2	488.722164	975.429775	0.19398	9.4802E-05	0.19601	9.5797E-05	0.38999	0.0001906	488.7221868920065	27.315	0.36431	27.146	26.964	27.328	-0.16933					13	6	3	0	0	0	0.0066233	1	9827	9827		123.45	49.028	1	19797000			33142	5176	20916	21028	31902	31902					-0.05892272758569561
TEGSHFVEA	9	Unmodified	_TEGSHFVEA_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;MFN1|p.F28L|1|0.06|ENSG00000171109|chr3:179348933-179348933|T/C|missense_variant;MFN1|p.H221Tfs*3|1|0.27|ENSG00000171109|chr3:179365127-179365127|T/-|frameshift_variant;nc|ENSG00000171109|Q8IWA4-2|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	HCT116MG_D190212_S4	4	489.2237548828125	2	488.722164	975.429775	0.0096487	4.7155E-06	0.36338	0.00017759	0.37303	0.00018231	488.72219671556843	27.522	0.2077	27.2	27.096	27.304	-0.32157					5	3	2	0	0	0	0.2853	1	9878	9878		32.305	16.458	1	1161200			33143	5176	20916	21028	31903	31903					-0.05892272758569561
TEHFLTAVA	9	Unmodified	_TEHFLTAVA_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;GNL3L|p.R369H|1|0.06|ENSG00000130119|chrX:54551899-54551899|G/A|missense_variant	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-SECPEP	HCT116MG_D190212_S1	1	494.2952880859375	2	494.758549	987.502546	0.25393	0.00012564	-1.0573	-0.00052308	-0.80332	-0.00039745	494.75881190901	41.025	0.18721	41.025	40.946	41.133	0					5	3	2	0	0	0	0.15894	1	15465	15465		46.021	15.384	1	4800800			33144	3057	20917	21029	31904	31904					0.008294810348502324
TEHFLTAVA	9	Unmodified	_TEHFLTAVA_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;GNL3L|p.R369H|1|0.06|ENSG00000130119|chrX:54551899-54551899|G/A|missense_variant	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MSMS	HCT116MG_D190212_S2	2	494.7590637207031	2	494.758549	987.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.054	1	40.985	40.485	41.485	-0.068913								0	0	0	0.038654	1	15500	15500		74.423	32.328	1				33145	3057	20917	21029	31905	31905					0.008294810348502324
TEHKKIHTA	9	Unmodified	_TEHKKIHTA_					0	0	0		nc|ENSG00000196247|Q9UII5|ZNF107;ENSG00000196247|ENST00000620827|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	MULTI-SECPEP	HCT116MG_D190212_S1	1	356.2791442871094	3	355.533091	1063.57744	-0.0037481	-1.3326E-06	-0.17007	-6.0467E-05	-0.17382	-6.18E-05	355.5329302729612	9.9631	0.37092	9.9631	9.7493	10.12	0					36	26	2	0	0	0	0.26787	1	3015	3015		4.5289	3.4574	1	752980			33146	6055	20918	21030	31906	31906					0.048196635660815446
TEHLVYNH	8	Unmodified	_TEHLVYNH_					0	0	0		ENST00000563135.5_1_15:41146443-41149170:+|nuORF;ENSG00000166145|ENST00000562057|SPINT1;nc|ENSG00000166145|O43278|SPINT1	ENST00000563135.5_1_15:41146443-41149170:+|nuORF	ENST00000563135.5_1_15:41146443-41149170:+|nuORF	MSMS	HCT116MG_D190212_S1	1	506.7460021972656	2	506.745973	1011.47739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.159	1	22.159	21.659	22.659	0								0	0	0	0.44863	1	7831	7831		46.021	15.384	1				33147	4823	20919	21031	31907	31907					-0.02788573767725211
TEHQHLDTL	9	Unmodified	_TEHQHLDTL_					0	0	0			REV__ENSG00000057704|ENST00000261226|TMCC3	REV__ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	HCT116MG_D190212_S1	1	547.76904296875	2	547.26727	1092.51999	0.60656	0.00033195	-0.16114	-8.8188E-05	0.44542	0.00024376	547.7685590034553	21.063	0.21528	21.063	20.904	21.12	0					6	3	2	0	0	0	0.35128	1	7414	7414		25.399	2.7412	1	3891200	+		33148	10658	20920	21032	31908	31908					-0.022572234301378558
TEHYCSYCY	9	Unmodified	_TEHYCSYCY_					0	0	0		nc|ENSG00000169918|Q8TE49|OTUD7A;ENSG00000169918|ENST00000307050|OTUD7A	nc|ENSG00000169918|Q8TE49|OTUD7A	nc|ENSG00000169918|Q8TE49|OTUD7A	MSMS	HCT116MG_D190212_S1	1	584.7059936523438	2	584.707342	1167.40013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.352	1	34.352	33.852	34.852	0								0	0	0	0.7689	1	12743	12743		4.756	0.81161	1				33149	5101	20921	21033	31909	31909					-0.1768729609057118
TEIDHWLEF	9	Unmodified	_TEIDHWLEF_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	HCT116MG_D190212_S1	1	595.2802124023438	2	595.279846	1188.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.407	1	56.407	55.907	56.907	0								0	0	0	0.67173	1	21684	21684		20.454	9.6297	1				33150	3424	20922	21034	31910	31910					-0.041591686275978645
TEIDHWLEF	9	Unmodified	_TEIDHWLEF_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S2	2	595.2802124023438	2	595.279846	1188.54514	0.75035	0.00044667	0.031212	1.858E-05	0.78156	0.00046525	595.2797312896159	56.468	0.31364	56.286	56.104	56.418	-0.18261					10	5	3	0	0	0	0.0040473	1	21804	21804		149.99	64.638	1	135700000			33151	3424	20922	21034	31911	31911					-0.041591686275978645
TEIEHKVAF	9	Unmodified	_TEIEHKVAF_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	537.2852172851562	2	537.284931	1072.55531	0.5482	0.00029454	0.039196	2.1059E-05	0.58739	0.0003156	537.2847898597088	31.466	0.20823	31.466	31.388	31.596	0					6	3	2	0	0	0	0.26031	1	11628	11628		34.932	19.085	1	6958800			33152	1073	20923	21035	31912	31912					0.021934390976412033
TEIEHKVAF	9	Unmodified	_TEIEHKVAF_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2852172851562	2	537.284931	1072.55531	0.67098	0.00036051	-0.090168	-4.8446E-05	0.58081	0.00031206	537.2849674595946	31.768	0.36223	31.519	31.354	31.716	-0.24883					11	6	2	0	0	0	0.064006	1	11741	11741		67.838	43.164	1	25723000			33153	1073	20923	21035	31913	31913					0.021934390976412033
TEIEHKVAF	9	Unmodified	_TEIEHKVAF_					0	0	0		SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant;SYNE2|p.A5240Qfs*5|1|0.07|ENSG00000054654|chr14:64152639-64152639|G/-|frameshift_variant;SYNE2|p.L5308Ifs*18|1|0.12|ENSG00000054654|chr14:64158750-64158751|GG/-|frameshift_variant;SYNE2|p.S6651Rfs*83|1|0.29|ENSG00000054654|chr14:64220596-64220597|-/G|frameshift_variant;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	SYNE2|p.F4992Lfs*13|1|0.39|ENSG00000054654|chr14:64140067-64140067|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	537.284931	1072.55531	0.38895	0.00020898	-0.36802	-0.00019773	0.020936	1.1248E-05	537.2850104082568	31.866	0.20826	31.596	31.43	31.638	-0.27027	0.068662	-0.0003549	NaN	67.838	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5518100			33154	1073	20923	21035							0.021934390976412033
TEIFGVLSVAT	11	Unmodified	_TEIFGVLSVAT_					0	0	0		ENST00000498794.1_1_3:49053846-49053972:-|nuORF;ENST00000467457.5_1_3:49053470-49054225:-|nuORF;ENST00000472331.5_1_3:49053470-49054132:-|nuORF;nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENSG00000178149|ENST00000341949|DALRD3	ENST00000498794.1_1_3:49053846-49053972:-|nuORF	ENST00000498794.1_1_3:49053846-49053972:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	568.312255859375	2	568.813522	1135.61249	0.16434	9.3477E-05	0.62083	0.00035314	0.78517	0.00044661	568.8139819713889	44.122	0.15373	44.044	43.967	44.121	-0.078373					4	2	2	0	0	0	0.35292	1	16778	16778		10.8	0	1	18380000			33155	5488	20924	21036	31914	31914					0.05010861583377846
TEIGSIHSA	9	Unmodified	_TEIGSIHSA_					0	0	0		ENSG00000179364|ENST00000447393|PACS2;nc|ENSG00000179364|Q86VP3-4|PACS2;nc|ENSG00000179364|Q86VP3|PACS2;ENST00000551692.5_1_14:105834472-105850026:+|nuORF	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MULTI-MSMS	HCT116MG_D190212_S2	2	457.7322998046875	2	457.732532	913.45051	0.17099	7.8266E-05	0.18512	8.4737E-05	0.35611	0.000163	457.7324502734726	27.036	0.31659	26.683	26.554	26.871	-0.35254					9	5	3	0	0	0	0.012168	1	9807	9807		108	36.863	1	35865000			33156	5553	20925	21037	31915	31915					-0.009676823789050104
TEIGSIHSA	9	Unmodified	_TEIGSIHSA_					0	0	0		ENSG00000179364|ENST00000447393|PACS2;nc|ENSG00000179364|Q86VP3-4|PACS2;nc|ENSG00000179364|Q86VP3|PACS2;ENST00000551692.5_1_14:105834472-105850026:+|nuORF	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MULTI-MSMS	HCT116MG_D190212_S3	3	457.7325439453125	2	457.732532	913.45051	0.40598	0.00018583	-0.11804	-5.4032E-05	0.28794	0.0001318	457.7323698529731	26.846	0.41684	26.697	26.567	26.984	-0.14924					14	7	3	0	0	0	0.016134	1	9656	9656		100.37	29.238	1	22967000			33157	5553	20925	21037	31916	31916					-0.009676823789050104
TEIGSIHSA	9	Unmodified	_TEIGSIHSA_					0	0	0		ENSG00000179364|ENST00000447393|PACS2;nc|ENSG00000179364|Q86VP3-4|PACS2;nc|ENSG00000179364|Q86VP3|PACS2;ENST00000551692.5_1_14:105834472-105850026:+|nuORF	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MULTI-MSMS	HCT116MG_D190212_S4	4	457.7328796386719	2	457.732532	913.45051	0.21548	9.8631E-05	-0.13535	-6.1954E-05	0.080128	3.6677E-05	457.7323348527922	27.063	0.36378	26.752	26.587	26.95	-0.3114					12	6	3	0	0	0	0.057285	1	9667	9667		71.134	18.865	1	7769300			33158	5553	20925	21037	31917	31917					-0.009676823789050104
TEIKVGVAY	9	Unmodified	_TEIKVGVAY_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-SECPEP	HCT116MG_D190212_S1	1	490.28607177734375	2	490.276575	978.538597	0.73758	0.00036162	-0.47813	-0.00023441	0.25946	0.00012721	490.2762837528859	37.54	0.35977	37.54	37.348	37.707	0					12	6	3	0	0	0	0.25004	1	14007	14007		10.824	2.9138	1	41315000			33159	983	20926	21038	31918	31918					0.04846938211710494
TEIRDMLLA	9	Unmodified	_TEIRDMLLA_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000089157|P05388-2|RPLP0;ENST00000546564.5_1_12:120636605-120638589:-|nuORF;ENST00000548568.5_1_12:120636605-120638589:-|nuORF	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MSMS	HCT116MG_D190212_S3	3	531.2869873046875	2	531.286617	1060.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.329	1	49.013	48.513	49.513	-0.31596								0	0	0	0.55657	1	18573	18573		26.021	7.8744	1				33160	1518	20927	21039	31919	31919					0.030823658800272824
TEIRMRFI	8	Unmodified	_TEIRMRFI_					0	0	0		ENSG00000054116|ENST00000373166|TRAPPC3;ENST00000462715.1_1_1:36602806-36603094:-|nuORF;nc|ENSG00000054116|O43617-2|TRAPPC3	ENSG00000054116|ENST00000373166|TRAPPC3	ENSG00000054116|ENST00000373166|TRAPPC3	MSMS	HCT116MG_D190212_S1	1	355.8674011230469	3	355.867305	1064.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8266	1	9.8266	9.3266	10.327	0								0	0	0	0.8837	1	2989	2989		1.8442	0	1				33161	1067	20928	21040	31920	31920					0.05037795699399794
TEIVNPFVEEM	11	Unmodified	_TEIVNPFVEEM_					0	0	0		tr|U7T3Y5|U7T3Y5_FUSNURibosomematurationfactorRimPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimPPE=3SV=1	tr|U7T3Y5|U7T3Y5_FUSNURibosomematurationfactorRimPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimPPE=3SV=1	tr|U7T3Y5|U7T3Y5_FUSNURibosomematurationfactorRimPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rimPPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	654.3124389648438	2	654.313029	1306.6115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.886	1	32.886	32.386	33.386	0								0	0	0	0.94538	1	12151	12151		8.7454	2.5396	1				33162	18613	20929	21041	31921	31921					-0.02953720847835939
TEKDFLEA	8	Unmodified	_TEKDFLEA_					0	0	0		nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	nc|ENSG00000161057|P35998-2|PSMC2	MULTI-SECPEP	HCT116MG_D190212_S2	2	476.30645751953125	2	476.73474	951.454927	0.00088113	4.2007E-07	0.076801	3.6614E-05	0.077682	3.7034E-05	476.73475635483663	37.963	0.31012	37.87	37.753	38.063	-0.09301					6	5	2	0	0	0	0.32122	1	14255	14255		12.532	3.1841	1	16402000			33163	4480	20930	21042	31922	31922					-0.022742179560054865
TEKEARVGPSP	11	Unmodified	_TEKEARVGPSP_					0	0	0			REV__ENST00000511524.1_1_3:139654198-140275504:+|nuORF	REV__ENST00000511524.1_1_3:139654198-140275504:+|nuORF	MSMS	HCT116MG_D190212_S2	2	586.2789306640625	2	585.809302	1169.60405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.728	1	26.375	25.875	26.875	-0.35254								0	0	0	0.89672	1	9682	9682		20.415	4.2654	1		+		33164	12778	20931	21043	31923	31923					0.026033076667545174
TEKENATVA	9	Unmodified	_TEKENATVA_					0	0	0		FADD|p.D175Efs*11|1|0.09|ENSG00000168040|chr11:70206370-70206371|-/G|frameshift_variant;ENSG00000168040|ENST00000301838|FADD	FADD|p.D175Efs*11|1|0.09|ENSG00000168040|chr11:70206370-70206371|-/G|frameshift_variant	FADD|p.D175Efs*11|1|0.09|ENSG00000168040|chr11:70206370-70206371|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	481.74298095703125	2	481.743096	961.47164	0.22836	0.00011001	-0.36042	-0.00017363	-0.13207	-6.3622E-05	481.74293615646025	16.811	0.20825	16.811	16.681	16.889	0					6	3	2	0	0	0	0.026999	1	5691	5691		89.401	43.38	1	6979700			33165	4978	20932	21044	31924	31924					-0.010637170700420029
TEKENATVA	9	Unmodified	_TEKENATVA_					0	0	0		FADD|p.D175Efs*11|1|0.09|ENSG00000168040|chr11:70206370-70206371|-/G|frameshift_variant;ENSG00000168040|ENST00000301838|FADD	FADD|p.D175Efs*11|1|0.09|ENSG00000168040|chr11:70206370-70206371|-/G|frameshift_variant	FADD|p.D175Efs*11|1|0.09|ENSG00000168040|chr11:70206370-70206371|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	481.7459411621094	2	481.743096	961.47164	0.209	0.00010068	0.41588	0.00020035	0.62488	0.00030103	481.74308603766275	17.163	0.46905	16.813	16.561	17.03	-0.34933					14	8	3	0	0	0	0.040027	1	5806	5806		79.596	15.636	1	19795000			33166	4978	20932	21044	31925	31925					-0.010637170700420029
TEKKDVLVP	9	Unmodified	_TEKKDVLVP_					0	0	0		NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant;NBR1|p.L746Wfs*50|1|0.23|ENSG00000188554|chr17:43200372-43200372|C/-|frameshift_variant;nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant	NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	514.8032836914062	2	514.802957	1027.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.158	1	29.873	29.373	30.373	-0.28453								0	0	0	0.050056	1	11076	11076		70.332	8.7301	1				33167	5989	20933	21045	31926	31926					0.07866896274504143
TEKKRKKKV	9	Unmodified	_TEKKRKKKV_					0	0	0			REV__ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant	REV__ANKRD11|p.I1115Tfs*203|1|0.24|ENSG00000167522|chr16:89283198-89283198|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	572.8823852539062	2	572.879865	1143.74518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.653	1	29.353	28.853	29.853	-0.30095								0	0	0	0.76967	1	10871	10871		2.0598	0.21551	1		+		33168	9938	20934	21046	31927	31927					0.17905350830687894
TEKLVAFLF	9	Unmodified	_TEKLVAFLF_					0	0	0		nc|ENSG00000112293|P80108-2|GPLD1;ENST00000378243.8_1_6:24473808-24489784:-|nuORF;ENSG00000112293|ENST00000230036|GPLD1	nc|ENSG00000112293|P80108-2|GPLD1	nc|ENSG00000112293|P80108-2|GPLD1	MSMS	HCT116MG_D190212_S3	3	534.3118896484375	2	534.310418	1066.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.523	1	25.417	24.917	25.917	-0.10618								0	0	0	0.7689	1	9116	9116		4.756	0	1				33169	2339	20935	21047	31928	31928					0.07564388142509415
TEKMIEKY	8	Unmodified	_TEKMIEKY_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1;SPTBN1|p.K503Rfs*24|1|0.06|ENSG00000115306|chr2:54626095-54626095|G/-|frameshift_variant;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000115306|Q01082-3|SPTBN1	MSMS	HCT116MG_D190212_S2	2	521.2686767578125	2	521.267893	1040.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.092	1	24.717	24.217	25.217	-0.37521								0	0	0	0.29552	1	9021	9021		55.235	9.4948	1				33170	2459;1233	20936	21048	31929	31929					0.002592746144046032
TEKMVHIY	8	Unmodified	_TEKMVHIY_					0	0	0		ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	MULTI-MSMS	HCT116MG_D190212_S2	2	510.7628479003906	2	510.762778	1019.511	0.4357	0.00022254	-1.1166	-0.00057033	-0.68092	-0.00034779	510.7617629012274	31.267	0.36059	31	30.768	31.128	-0.26704					12	6	3	0	0	0	0.27593	1	11574	11574		61.357	29.052	1	20480000			33171	5008	20937	21049	31930	31930					0.002027116798103634
TEKMVHIY	8	Unmodified	_TEKMVHIY_					0	0	0		ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	MULTI-SECPEP	HCT116MG_D190212_S4	4	510.2433776855469	2	510.762778	1019.511	0.12059	6.1591E-05	0.21103	0.00010779	0.33162	0.00016938	510.7626873584301	31.593	0.20785	31.223	31.127	31.335	-0.37026					5	3	2	0	0	0	0.26661	1	11446	11446		24.674	7.7316	1	1551600			33172	5008	20937	21049	31931	31931					0.002027116798103634
TEKPLKKRET	10	Unmodified	_TEKPLKKRET_					0	0	0			REV__ENSG00000122218|ENST00000241704|COPA	REV__ENSG00000122218|ENST00000241704|COPA	MSMS	HCT116MG_D190212_S1	1	615.3661499023438	2	615.364244	1228.71394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.348	1	31.348	30.848	31.848	0								0	0	0	0.90291	1	11531	11531		15.248	3.7538	1		+		33173	11731	20938	21050	31932	31932					0.10872733005930968
TEKRDFVSA	9	Unmodified	_TEKRDFVSA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563822.1_1_16:1505719-1509320:-|nuORF;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S1	1	526.7716674804688	2	526.772188	1051.52982	0.28334	0.00014925	0.0028684	1.511E-06	0.28621	0.00015077	526.77218460907	23.422	0.26106	23.422	23.262	23.523	0					14	4	4	0	0	0	0.012531	1	8331	8331		107.1	63.241	1	52721000			33174	1884	20939	21051	31933	31933					0.006119645752505676
TEKRDFVSA	9	Unmodified	_TEKRDFVSA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563822.1_1_16:1505719-1509320:-|nuORF;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S2	2	526.7727661132812	2	526.772188	1051.52982	0.62264	0.00032799	-0.25957	-0.00013673	0.36306	0.00019125	526.7720369012953	24.021	0.41545	23.637	23.456	23.871	-0.38324					24	7	4	0	0	0	0.012531	1	8570	8570		107.1	65.144	1	324340000			33175	1884	20939	21051	31934	31934					0.006119645752505676
TEKRDFVSA	9	Unmodified	_TEKRDFVSA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563822.1_1_16:1505719-1509320:-|nuORF;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S2	2	351.5172119140625	3	351.517218	1051.52982	0.075822	2.6653E-05	0.18072	6.3526E-05	0.25654	9.0179E-05	351.5170957033043	24.021	0.3114	23.637	23.456	23.767	-0.38324					11	5	3	0	0	0	0.21258	1	8595	8595		30.703	16.298	1	51213000			33176	1884	20939	21051	31935	31935					0.006119645752505676
TEKRDFVSA	9	Unmodified	_TEKRDFVSA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563822.1_1_16:1505719-1509320:-|nuORF;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S2	2	1052.5379638671875	1	1052.5371	1051.52982	0.85642	0.00090142	0.09291	9.7791E-05	0.94933	0.00099921	1052.5370055312967	24.021	0.20732	23.637	23.508	23.715	-0.38324					6	3	2	0	0	0	0.029121	1	8613	8613		87.258	34.99	1	18957000			33177	1884	20939	21051	31936	31936					0.006119645752505676
TEKRDFVSA	9	Unmodified	_TEKRDFVSA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563822.1_1_16:1505719-1509320:-|nuORF;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S3	3	526.7722778320312	2	526.772188	1051.52982	0.38153	0.00020098	-0.27298	-0.0001438	0.10855	5.7181E-05	526.7719829618125	23.305	0.41697	23.265	23.083	23.5	-0.03968					20	7	4	0	0	0	0.043159	1	8223	8223		78.06	43.659	1	46882000			33178	1884	20939	21051	31937	31937					0.006119645752505676
TEKRDFVSA	9	Unmodified	_TEKRDFVSA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563822.1_1_16:1505719-1509320:-|nuORF;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S3	3	351.51708984375	3	351.517218	1051.52982	-0.11541	-4.0568E-05	-0.13569	-4.7697E-05	-0.2511	-8.8265E-05	351.51711682152785	23.305	0.26057	23.265	23.135	23.396	-0.03968					8	4	2	0	0	0	0.21258	1	8232	8232		43.982	26.539	1	11599000			33179	1884	20939	21051	31938	31938					0.006119645752505676
TEKRDFVSA	9	Unmodified	_TEKRDFVSA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563822.1_1_16:1505719-1509320:-|nuORF;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	HCT116MG_D190212_S4	4	526.7723388671875	2	526.772188	1051.52982	0.37046	0.00019515	-0.27547	-0.00014511	0.094992	5.0039E-05	526.7721178061149	23.649	0.52008	23.402	23.22	23.74	-0.24775					11	9	2	0	0	0	0.094138	1	8295	8295		59.368	21.193	1	10225000			33180	1884	20939	21051	31939	31939					0.006119645752505676
TEKRDFVSA	9	Unmodified	_TEKRDFVSA_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563822.1_1_16:1505719-1509320:-|nuORF;RBCK1-CLCN7|2|fusion;RBCK1-CLCN7|1|fusion	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	351.517218	1051.52982	-0.14294	-5.0247E-05	0.19089	6.7102E-05	0.047948	1.6854E-05	351.51721526163385	23.392	0.20882	23.392	23.314	23.523	0	-0.039328	0.00021696	NaN	30.703	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9403900			33181	1884	20939	21051							0.006119645752505676
TEKRKKIK	8	Unmodified	_TEKRKKIK_					0	0	0		NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant;NBAS|p.L1365Ifs*4|1|0.13|ENSG00000151779|chr2:15352075-15352078|AAAG/-|frameshift_variant;NBAS|p.Y1476Mfs*33|1|0.28|ENSG00000151779|chr2:15328234-15328234|A/-|frameshift_variant;nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant	NBAS|p.N1064Tfs*12|1|0.31|ENSG00000151779|chr2:15394293-15394293|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	516.374267578125	2	515.840208	1029.66586	0.2949	0.00015212	-0.81676	-0.00042132	-0.52186	-0.0002692	515.839796482582	58.236	0.37858	58.236	58.085	58.463	0					9	7	2	0	0	0	0.33574	1	22412	22412		0	0	1	69682000			33182	4127	20940	21052	31940	31940					0.1522170387654569
TEKSEEKPG	9	Unmodified	_TEKSEEKPG_					0	0	0			REV__MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	REV__MAP2|p.T1474Qfs*14|2|0.28|ENSG00000078018|chr2:209696943-209696943|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	503.1075439453125	2	502.748379	1003.4822	0.10089	5.0721E-05	0.010435	5.2461E-06	0.11132	5.5967E-05	502.74808599695325	17.336	0.52025	17.418	17.273	17.794	0.081356					21	9	3	0	0	0	0.55223	1	5856	5856		13.906	4.5229	1	10921000	+		33183	10831	20941	21053	31941	31941					-0.01939734415611838
TEKSRWSEA	9	Unmodified	_TEKSRWSEA_					0	0	0		ENSG00000125652|ENST00000245812|ALKBH7	ENSG00000125652|ENST00000245812|ALKBH7	ENSG00000125652|ENST00000245812|ALKBH7	MULTI-MSMS	HCT116MG_D190212_S2	2	547.2675170898438	2	547.26727	1092.51999	0.33791	0.00018493	-0.0087758	-4.8027E-06	0.32913	0.00018012	547.2671188966141	21.682	0.31153	21.297	21.167	21.479	-0.38503					11	5	3	0	0	0	0.0064513	1	7667	7667		124.95	53.031	1	26037000			33184	2897	20942	21054	31942	31942					-0.022572234301378558
TEKSRWSEA	9	Unmodified	_TEKSRWSEA_					0	0	0		ENSG00000125652|ENST00000245812|ALKBH7	ENSG00000125652|ENST00000245812|ALKBH7	ENSG00000125652|ENST00000245812|ALKBH7	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	547.26727	1092.51999	0.60656	0.00033195	-0.16114	-8.8188E-05	0.44542	0.00024376	547.7685590034553	21.063	0.21528	21.063	20.904	21.12	0	-0.11665	-5.2071E-05	NaN	124.95	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3891200			33185	2897	20942	21054							-0.022572234301378558
TEKTKKDRRSR	11	Unmodified	_TEKTKKDRRSR_					0	0	0		nc|ENSG00000168556|Q9H160-2|ING2;ENSG00000168556|ENST00000302327|ING2	nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	MSMS	HCT116MG_D190212_S1	1	468.9375915527344	3	468.939179	1403.79571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.008	1	15.008	14.508	15.508	0								0	0	0	0.95636	1	4955	4955		1.2148	0.51716	1				33186	5020	20943	21055	31943	31943					0.10996228417752718
TEKTPTGT	8	Unmodified	_TEKTPTGT_					0	0	0		ENSG00000170807|ENST00000458573|LMOD2;nc|ENSG00000170807|Q6P5Q4-3|LMOD2;nc|ENSG00000170807|Q6P5Q4-2|LMOD2;LMOD2|p.P401Ifs*14|1|0.04|ENSG00000170807|chr7:123662786-123662787|-/ATATTTCTTGT|frameshift_variant;LMOD2|p.K405Qfs*119|1|0.49|ENSG00000170807|chr7:123662794-123662795|-/C|frameshift_variant	ENSG00000170807|ENST00000458573|LMOD2	ENSG00000170807|ENST00000458573|LMOD2	MSMS	HCT116MG_D190212_S1	1	417.7141418457031	2	417.713808	833.413062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.854	1	16.854	16.354	17.354	0								0	0	0	0.8837	1	5700	5700		13.508	0	1				33187	5157	20944	21056	31944	31944					-0.010307736445156479
TEKVHVPA	8	Unmodified	_TEKVHVPA_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	440.74798583984375	2	440.747985	879.481417	0.050032	2.2051E-05	-0.069292	-3.054E-05	-0.019261	-8.4891E-06	440.7479351006601	21.788	0.3127	21.788	21.594	21.906	0					10	5	2	0	0	0	0.19352	2	7704	7671;7704		74.929	38.885	1	9713200			33188	438	20945	21057	31945;31946	31946					0.03685515725987898
TEKVHVPA	8	Unmodified	_TEKVHVPA_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	440.7481689453125	2	440.747985	879.481417	0.27735	0.00012224	0.048558	2.1402E-05	0.3259	0.00014364	440.7479193512581	22.358	0.41519	21.973	21.739	22.154	-0.3852					11	7	2	0	0	0	0.17427	1	7932	7932		78.728	25.152	1	15666000			33189	438	20945	21057	31947	31947					0.03685515725987898
TEKWRPRREN	10	Unmodified	_TEKWRPRREN_					0	0	0		ENST00000499631.2_1_3:129112488-129117898:-|nuORF;ENST00000510078.5_1_3:129112488-129115182:-|nuORF;ENST00000514355.5_1_3:129112485-129117890:-|nuORF	ENST00000499631.2_1_3:129112488-129117898:-|nuORF	ENST00000499631.2_1_3:129112488-129117898:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	458.2313537597656	3	457.912853	1370.71673	0.13707	6.2768E-05	0.43683	0.00020003	0.5739	0.0002628	457.912871416337	16.656	0.20824	16.314	16.204	16.412	-0.34183					5	3	2	0	0	0	0.31029	1	5642	5642		5.0475	3.7179	1	4016600			33190	8418	20946	21058	31948	31948					0.04620001183457134
TELALAVL	8	Unmodified	_TELALAVL_					0	0	0		ENST00000434207.1_1_1:95603845-95603971:+|nuORF	ENST00000434207.1_1_1:95603845-95603971:+|nuORF	ENST00000434207.1_1_1:95603845-95603971:+|nuORF	MSMS	HCT116MG_D190212_S4	4	415.25390625	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.182	1	39.802	39.302	40.302	-0.37909								0	0	0	0.8837	1	14732	14732		2.3027	0	1				33191	7873	20947	21059	31949	31949					0.07456168154271836
TELDKIRQA	9	Unmodified	_TELDKIRQA_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	537.3014526367188	2	537.301113	1072.58767	0.50937	0.00027369	0.23504	0.00012629	0.74441	0.00039997	537.3012724440521	27.686	0.31013	27.344	27.139	27.449	-0.34201					10	5	3	0	0	0	0.29516	1	10102	10102		31.268	1.4278	1	30102000			33192	741	20948	21060	31950	31950					0.05428226500657729
TELDKIRQA	9	Unmodified	_TELDKIRQA_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	537.3013305664062	2	537.301113	1072.58767	0.64642	0.00034732	-0.099478	-5.3449E-05	0.54694	0.00029387	537.3011167560379	27.627	0.31181	27.439	27.309	27.621	-0.18847					7	5	2	0	0	0	0.20521	1	9990	9990		40.725	17.989	1	8562000			33193	741	20948	21060	31951	31951					0.05428226500657729
TELEYIHAL	9	Unmodified	_TELEYIHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MSMS	HCT116MG_D190212_S1	1	544.785400390625	2	544.784764	1087.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.357	1	48.357	47.857	48.857	0								0	0	0	0.3563	1	18398	18398		36.044	9.7761	1				33194	3148	20949	21061	31952	31952					0.014700193778026005
TELEYIHAL	9	Unmodified	_TELEYIHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	HCT116MG_D190212_S2	2	544.7847290039062	2	544.784764	1087.55498	0.67755	0.00036912	-0.22285	-0.00012141	0.4547	0.00024771	544.7846634908367	48.469	0.20325	48.325	48.185	48.388	-0.1437					5	3	2	0	0	0	0.49914	1	18539	18539		16.942	0.79319	1	42319000			33195	3148	20949	21061	31953	31953					0.014700193778026005
TELEYIHAL	9	Unmodified	_TELEYIHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MSMS	HCT116MG_D190212_S3	3	544.7852783203125	2	544.784764	1087.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.713	1	48.397	47.897	48.897	-0.31596								0	0	0	0.27276	1	18329	18329		42.095	17.104	1				33196	3148	20949	21061	31954	31954					0.014700193778026005
TELEYIHAL	9	Unmodified	_TELEYIHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	HCT116MG_D190212_S1	1		2	544.784764	1087.55498	0.31187	0.0001699	0.76101	0.00041459	1.0729	0.00058449	544.7849638405611	48.308	0.15393	48.308	48.203	48.357	0	-0.0087158	0.00044794	NaN	16.942	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9923200			33197	3148	20949	21061							0.014700193778026005
TELGHGPL	8	Unmodified	_TELGHGPL_					0	0	0			REV__ENSG00000100665|ENST00000557004|SERPINA4	REV__ENSG00000100665|ENST00000557004|SERPINA4	MSMS	HCT116MG_D190212_S4	4	412.217529296875	2	412.21906	822.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.433	1	37.049	36.549	37.549	-0.3839								0	0	0	0.8837	1	13737	13737		2.8892	0.31174	1		+		33198	11098	20950	21062	31955	31955					0.005252538005606766
TELGSTHTA	9	Unmodified	_TELGSTHTA_					0	0	0		ENSG00000088888|ENST00000428216|MAVS;nc|ENSG00000088888|Q7Z434-4|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-MSMS	HCT116MG_D190212_S2	2	458.7225341796875	2	458.722164	915.429775	0.10468	4.802E-05	0.36955	0.00016952	0.47423	0.00021754	458.72231420581426	19.959	0.20686	19.584	19.455	19.661	-0.37503					7	3	3	0	0	0	0.0054498	1	6956	6956		133.7	76.231	1	16671000			33199	1503	20951	21063	31956	31956					-0.031322727585916255
TELGSTHTA	9	Unmodified	_TELGSTHTA_					0	0	0		ENSG00000088888|ENST00000428216|MAVS;nc|ENSG00000088888|Q7Z434-4|MAVS	ENSG00000088888|ENST00000428216|MAVS	ENSG00000088888|ENST00000428216|MAVS	MULTI-MSMS	HCT116MG_D190212_S3	3	458.72198486328125	2	458.722164	915.429775	0.34723	0.00015928	0.42168	0.00019344	0.76892	0.00035272	458.7221297955068	19.144	0.25974	19.213	19.031	19.291	0.069159					6	4	2	0	0	0	0.027492	1	6552	6552		88.904	58.267	1	6550800			33200	1503	20951	21063	31957	31957					-0.031322727585916255
TELIENVIKN	10	Unmodified	_TELIENVIKN_					0	0	0		ENST00000421655.1_1_9:108522415-108523033:+|nuORF	ENST00000421655.1_1_9:108522415-108523033:+|nuORF	ENST00000421655.1_1_9:108522415-108523033:+|nuORF	MSMS	HCT116MG_D190212_S2	2	586.8301391601562	2	586.829703	1171.64485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.99	1	19.615	19.115	20.115	-0.37503								0	0	0	0.90892	1	6963	6963		13.906	3.1065	1				33201	7790	20952	21064	31958	31958					0.06589648986368957
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000168148|ENST00000366696|H3-4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S1	1	493.3236999511719	2	493.32386	984.633166	0.16539	8.1591E-05	0.33779	0.00016664	0.50318	0.00024823	493.323827656483	40.98	0.23488	40.98	40.846	41.081	0					10	4	3	0	0	0	0.014149	1	15416	15416		158.2	0	1	41415000			33202	3188	20953	21065	31959	31959					0.14023496753691234
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000168148|ENST00000366696|H3-4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S2	2	493.3240966796875	2	493.32386	984.633166	0.31897	0.00015736	0.22988	0.0001134	0.54885	0.00027076	493.3238934171304	40.976	0.31091	40.907	40.725	41.036	-0.069626					14	5	4	0	0	0	0.043218	1	15469	15469		131.27	0	1	153060000			33203	3188	20953	21065	31960	31960					0.14023496753691234
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000168148|ENST00000366696|H3-4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S3	3	493.3238525390625	2	493.32386	984.633166	0.23276	0.00011483	0.22627	0.00011163	0.45904	0.00022645	493.32389379010954	41.181	0.26126	40.879	40.736	40.997	-0.30185					10	4	3	0	0	0	0.061239	1	15330	15330		111.29	0	1	7478600			33204	3188	20953	21065	31961	31961					0.14023496753691234
TELQGMNEY	9	Oxidation (M)	_TELQGM(Oxidation (M))NEY_		TELQGM(1)NEY		TELQGM(42)NEY	0	0	1		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	550.7958374023438	2	550.731871	1099.44919	0.40104	0.00022086	-0.29245	-0.00016106	0.10859	5.9803E-05	550.7315397158226	28.307	0.25938	27.977	27.77	28.029	-0.32987					7	4	2	0	0	0	0.1935	1	10327	10327		41.956	9.6501	1	4511500			33205	428	20954	21066	31962	31962		6			-0.09655684529957398
TELQGMNEY	9	Unmodified	_TELQGMNEY_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1084.46240234375	1	1084.46155	1083.45428	0.3908	0.00042381	0.23595	0.00025588	0.62676	0.00067969	1084.4618449374339	37.206	0.2057	37.103	36.974	37.18	-0.10318					6	3	2	0	0	0	0.0058997	1	13949	13949		129.77	79.839	1	25642000			33206	428	20954	21067	31963	31963					-0.08411380667348567
TELQGMNEY	9	Unmodified	_TELQGMNEY_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1084.4617919921875	1	1084.46155	1083.45428	0.46635	0.00050574	-0.22473	-0.00024371	0.24162	0.00026202	1084.4615691762963	37.357	0.26017	37.055	36.925	37.185	-0.30137					7	4	2	0	0	0	0.21258	1	13868	13868		39.95	7.6442	1	4175000			33207	428	20954	21067	31964	31964					-0.08411380667348567
TELRRLEKVVL	11	Unmodified	_TELRRLEKVVL_					0	0	0			REV__ENSG00000103429|ENST00000261658|BFAR	REV__ENSG00000103429|ENST00000261658|BFAR	MSMS	HCT116MG_D190212_S2	2	678.4242553710938	2	678.422094	1354.82963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.613	1	45.515	45.015	46.015	-0.098167								0	0	0	0.95686	1	17351	17351		2.7352	0.45242	1		+		33208	11190	20955	21068	31965	31965					0.16641256856792097
TELTEEKAY	9	Unmodified	_TELTEEKAY_					0	0	0		ENST00000447266.6_1_6:76376439-76376544:+|nuORF	ENST00000447266.6_1_6:76376439-76376544:+|nuORF	ENST00000447266.6_1_6:76376439-76376544:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	361.8453063964844	3	361.845	1082.51317	0.19165	6.9349E-05	1.0278	0.00037191	1.2195	0.00044126	361.84523578507793	28.615	0.31743	28.615	28.429	28.746	0					8	5	2	0	0	0	0.49914	1	10457	10457		11.495	2.7493	1	10314000			33209	7960	20956	21069	31966	31966					-0.02478581101377131
TELWANSVGT	10	Unmodified	_TELWANSVGT_					0	0	0			REV__PPP4R4|p.T186Nfs*8|1|0.1|ENSG00000119698|chr14:94233689-94233690|-/A|frameshift_variant	REV__PPP4R4|p.T186Nfs*8|1|0.1|ENSG00000119698|chr14:94233689-94233690|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	539.2626953125	2	539.264196	1076.51384	0.13695	7.385E-05	-1.0945	-0.00059023	-0.95757	-0.00051638	539.26252612677	17.571	0.31141	17.4	17.277	17.588	-0.17047					8	5	2	0	0	0	0.65652	1	5851	5851		24.021	0	1	1371700	+		33210	11665	20957	21070	31967	31967					-0.021357416616638147
TEMASGSNRTP	11	Unmodified	_TEMASGSNRTP_					0	0	0		ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	MULTI-MSMS	HCT116MG_D190212_S3	3	576.2664794921875	2	575.761494	1149.50844	0.45546	0.00026224	2.5628	0.0014755	3.0182	0.0017378	576.2655962450119	18.354	0.26073	18.43	18.257	18.518	0.076334					6	4	2	0	0	0	0.47821	1	6240	6240		48.073	13.671	1	3254100			33211	3601	20958	21071	31968	31968					-0.06033788515787819
TEMLTSEL	8	Unmodified	_TEMLTSEL_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S1	1	923.43994140625	1	923.439025	922.431749	0.8687	0.00080219	0.12389	0.00011441	0.99259	0.0009166	923.439019089513	47.48	0.19997	47.48	47.395	47.595	0					5	3	2	0	0	0	0.062806	1	18065	18065		109.63	20.202	1	9093000			33212	3119	20959	21072	31969	31969					-0.03256980064975323
TEMLTSEL	8	Unmodified	_TEMLTSEL_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	923.439697265625	1	923.439025	922.431749	0.607	0.00056053	0.53479	0.00049385	1.1418	0.0010544	923.43925362225	47.856	0.312	47.541	47.359	47.671	-0.31525					8	5	2	0	0	0	0.050259	1	17991	17991		123.1	33.669	1	7349600			33213	3119	20959	21072	31970	31970					-0.03256980064975323
TENDIRVMF	9	Unmodified	_TENDIRVMF_					0	0	0		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	562.7741088867188	2	562.773874	1123.53319	0.33396	0.00018794	0.18084	0.00010177	0.5148	0.00028972	562.7738059721029	49.184	0.36285	49.184	48.974	49.337	0					15	6	3	0	0	0	0.0050238	1	18746	18746		137.42	101.3	1	75808000			33214	4046	20960	21073	31971	31971					-0.02363108642384759
TENDIRVMF	9	Unmodified	_TENDIRVMF_					0	0	0		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	562.7744750976562	2	562.773874	1123.53319	0.32931	0.00018533	-0.25344	-0.00014263	0.075865	4.2695E-05	562.7737688134982	49.217	0.60767	49.063	48.834	49.441	-0.15405					24	11	4	0	0	0	0.0096523	1	18811	18811		114.2	70.343	1	240620000			33215	4046	20960	21073	31972	31972					-0.02363108642384759
TENDIRVMF	9	Unmodified	_TENDIRVMF_					0	0	0		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	562.7739868164062	2	562.773874	1123.53319	0.28146	0.0001584	-0.35257	-0.00019842	-0.071111	-4.0019E-05	562.7737814587201	49.48	0.36629	49.164	48.975	49.341	-0.31596					16	6	4	0	0	0	0.00086357	1	18634	18634		193.29	141.03	1	35368000			33216	4046	20960	21073	31973	31973					-0.02363108642384759
TENDIRVMF	9	Unmodified	_TENDIRVMF_					0	0	0		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	562.7736206054688	2	562.773874	1123.53319	0.11858	6.6736E-05	-0.95543	-0.00053769	-0.83684	-0.00047095	562.7732075947555	49.554	0.29502	49.192	49.067	49.362	-0.36213					9	5	3	0	0	0	0.051033	1	18395	18395		74.2	47.316	1	10482000			33217	4046	20960	21073	31974	31974					-0.02363108642384759
TENDIRVMF	9	Oxidation (M)	_TENDIRVM(Oxidation (M))F_		TENDIRVM(1)F		TENDIRVM(170)F	0	0	1		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MSMS	HCT116MG_D190212_S1	1	570.7716674804688	2	570.771331	1139.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.891	1	42.891	42.391	43.391	0								0	0	0	1.6777E-08	1	16189	16189		165.72	90.791	1				33218	4046	20960	21074	31975	31975		93			-0.036074125050163275
TENDIRVMF	9	Oxidation (M)	_TENDIRVM(Oxidation (M))F_		TENDIRVM(1)F		TENDIRVM(150)F	0	0	1		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	570.7715454101562	2	570.771331	1139.52811	0.56398	0.0003219	-0.0067993	-3.8809E-06	0.55718	0.00031802	570.7714918900908	42.789	0.3106	42.719	42.533	42.844	-0.069981					12	5	3	0	0	0	0.0038512	1	16229	16229		152.89	84.805	1	47780000			33219	4046	20960	21074	31976	31976		93			-0.036074125050163275
TENDIRVMF	9	Oxidation (M)	_TENDIRVM(Oxidation (M))F_		TENDIRVM(1)F		TENDIRVM(110)F	0	0	1		ENST00000422993.2_1_11:47504376-47508350:-|nuORF;nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	ENST00000422993.2_1_11:47504376-47508350:-|nuORF	MSMS	HCT116MG_D190212_S4	4	570.7726440429688	2	570.771331	1139.52811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.188	1	42.813	42.313	43.313	-0.37493								0	0	0	0.006	1	15880	15880		114.2	51.629	1				33220	4046	20960	21074	31977	31977		93			-0.036074125050163275
TENLTILTKTQ	11	Unmodified	_TENLTILTKTQ_					0	0	0		tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	tr|U7SZH4|U7SZH4_FUSNUHelicaseATP-bindingdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00871PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	631.3541870117188	2	631.353542	1260.69253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.134	1	41.134	40.634	41.634	0								0	0	0	0.9465	1	15480	15480		8.1555	2.4237	1				33221	18528	20961	21075	31978	31978					0.07261303186555779
TENLTPWKK	9	Unmodified	_TENLTPWKK_					0	0	0		nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-SECPEP	HCT116MG_D190212_S3	3	558.2848510742188	2	558.806031	1115.59751	0.38243	0.00021371	-0.22095	-0.00012347	0.16149	9.0239E-05	559.3071995225539	52.043	0.1875	51.733	51.594	51.781	-0.30927					5	3	2	0	0	0	0.25656	1	19620	19620		5.7319	0	1	4549300			33222	2827	20962	21076	31979	31979					0.04433414506047484
TENQSYAKHSA	11	Unmodified	_TENQSYAKHSA_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	HCT116MG_D190212_S2	2	618.2874145507812	2	618.286191	1234.55783	0.29375	0.00018162	0.65536	0.0004052	0.94911	0.00058682	618.2869918132096	14.642	0.20876	14.323	14.192	14.401	-0.31952					5	3	2	0	0	0	0.74191	1	4835	4835		2.4985	0.65425	1	1651700			33223	2362	20963	21077	31980	31980					-0.05006757235310033
TEPGTPSAP	9	Unmodified	_TEPGTPSAP_					0	0	0		ENST00000595545.5_1_19:40329790-40331059:-|nuORF	ENST00000595545.5_1_19:40329790-40331059:-|nuORF	ENST00000595545.5_1_19:40329790-40331059:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	856.4052734375	1	856.404689	855.397412	0.64853	0.00055541	0.22882	0.00019596	0.87736	0.00075137	856.4047334099719	31.902	1.2495	31.631	31.273	32.523	-0.27027					42	23	2	0	0	0	0.023611	1	11882	11882		92.822	11.209	1	6829400			33224	9062	20964	21078	31981	31981					-0.036070601615620035
TEPHSPSDLL	10	Unmodified	_TEPHSPSDLL_					0	0	0		ENSG00000138378|ENST00000392320|STAT4	ENSG00000138378|ENST00000392320|STAT4	ENSG00000138378|ENST00000392320|STAT4	MULTI-MSMS	HCT116MG_D190212_S1	1	549.7611083984375	2	548.269478	1094.5244	0.3756	0.00020593	0.12452	6.827E-05	0.50012	0.0002742	548.2695070543022	19.469	0.36475	19.469	19.339	19.704	0					16	6	4	0	0	0	0.81435	1	6726	6726		10.824	0.75	1	93130000			33225	3553	20965	21079	31982	31982					-0.019077590072356543
TEPPPLLVY	9	Unmodified	_TEPPPLLVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	HCT116MG_D190212_S2	2	514.7867431640625	2	514.786776	1027.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.071	1	54.883	54.383	55.383	-0.18797								0	0	0	0.034849	1	21219	21219		77.984	41.94	1				33226	5321	20966	21080	31983	31983					0.04632108871510354
TEPPPLLVY	9	Unmodified	_TEPPPLLVY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.D1670Tfs*23|1|0.29|ENSG00000174231|chr17:1659487-1659487|C/-|frameshift_variant	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	HCT116MG_D190212_S3	3	514.786376953125	2	514.786776	1027.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.278	1	54.986	54.486	55.486	-0.2918								0	0	0	0.61599	1	20965	20965		23.148	9.6405	1				33227	5321	20966	21080	31984	31984					0.04632108871510354
TEPRKLRRQ	9	Unmodified	_TEPRKLRRQ_					0	0	0			REV__nc|ENSG00000087074|O75807-2|PPP1R15A	REV__nc|ENSG00000087074|O75807-2|PPP1R15A	MSMS	HCT116MG_D190212_S4	4	592.353759765625	2	592.354545	1182.69454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.057	1	39.677	39.177	40.177	-0.37936								0	0	0	0.76973	1	14683	14683		1.8442	0.19162	1		+		33228	10941	20967	21081	31985	31985					0.11049821505707769
TEQAIHNY	8	Unmodified	_TEQAIHNY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	HCT116MG_D190212_S2	2	488.23016357421875	2	488.230156	974.445759	0.19799	9.6665E-05	-0.28292	-0.00013813	-0.084931	-4.1466E-05	488.22979107459133	23.605	0.41529	23.221	22.988	23.403	-0.38324					10	7	2	0	0	0	0.66231	1	8392	8392		26.884	3.7352	1	16641000			33229	1919	20968	21082	31986	31986					-0.04248566521664543
TEQAIHNY	8	Unmodified	_TEQAIHNY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	HCT116MG_D190212_S3	3	488.2142639160156	2	488.230156	974.445759	0.043705	2.1338E-05	0.68962	0.00033669	0.73333	0.00035803	488.230365312883	22.941	0.15019	22.922	22.797	22.948	-0.018869					4	2	2	0	0	0	0.21625	1	8045	8045		43.858	5.8843	1	2340300			33230	1919	20968	21082	31987	31987					-0.04248566521664543
TEQAIHNY	8	Unmodified	_TEQAIHNY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	488.230156	974.445759	0.19799	9.6665E-05	-0.28292	-0.00013813	-0.084931	-4.1466E-05	488.22979107459133	23.605	0.41529	23.221	22.988	23.403	-0.38324	0.14981	-0.00064289	NaN	36.127	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16641000			33231	1919	20968	21082							-0.04248566521664543
TEQEPSTTP	9	Unmodified	_TEQEPSTTP_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	495.2253723144531	2	495.224736	988.43492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.465	1	20.508	20.008	21.008	0.04303								0	0	0	0.41664	1	7079	7079		32.786	3.7041	1				33232	594	20969	21083	31988	31988					-0.05976013686620263
TEQICYVSP	9	Unmodified	_TEQICYVSP_					0	0	0			REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|13|1|sense	REV__L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|13|1|sense	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.668701171875	2	520.241875	1038.4692	0.22746	0.00011833	2.792	0.0014525	3.0194	0.0015708	520.744354734428	21.483	0.31787	21.502	21.323	21.641	0.018446					6	5	2	0	0	0	0.25004	1	7419	7419		6.7232	1.4263	1	2897000	+		33233	16958	20970	21084	31989	31989					-0.048498887993673634
TEQPPSPLP	9	Unmodified	_TEQPPSPLP_					0	0	0		TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	TMEM131|p.L1469Tfs*5|1|0.43|ENSG00000075568|chr2:97772340-97772341|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	483.24993896484375	2	483.250557	964.486562	0.13843	6.6897E-05	-0.2331	-0.00011265	-0.094669	-4.5749E-05	483.2505289481835	38.316	0.51895	38.014	37.833	38.352	-0.30137					16	9	2	0	0	0	0.20983	1	14226	14226		40.239	10.014	1	2943900			33234	1320	20971	21085	31990	31990					0.002897747979545784
TEQSWPHSA	9	Unmodified	_TEQSWPHSA_					0	0	0		ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	MSMS	HCT116MG_D190212_S2	2	521.7618408203125	2	521.733063	1041.45157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.696	1	27.354	26.854	27.854	-0.34201								0	0	0	0.1947	1	10071	10071		47.749	11.704	1				33235	4717	20972	21086	31991	31991					-0.06749468010002602
TEQSWPHSA	9	Unmodified	_TEQSWPHSA_					0	0	0		ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	HCT116MG_D190212_S3	3	521.733642578125	2	521.733063	1041.45157	0.41559	0.00021683	0.085054	4.4375E-05	0.50065	0.0002612	521.7330676969249	27.383	0.46826	27.213	27.016	27.484	-0.16933					12	8	2	0	0	0	0.090581	1	9888	9888		60.074	31.587	1	2555800			33236	4717	20972	21086	31992	31992					-0.06749468010002602
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	HCT116MG_D190212_S1	1	582.803466796875	2	582.80402	1163.59349	-0.2813	-0.00016394	-0.51022	-0.00029736	-0.79152	-0.0004613	582.803746234625	38.322	0.26065	38.322	38.175	38.436	0					10	4	3	0	0	0	0.0095327	1	14362	14362		114.5	64.942	1	11913000			33237	3420	20973	21087	31993	31993					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MSMS	HCT116MG_D190212_S1	1	388.8714294433594	3	388.871772	1163.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.382	1	38.382	37.882	38.882	0								0	0	0	0.014027	1	14368	14368		84.738	55.457	1				33238	3420	20973	21087	31994	31994					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	HCT116MG_D190212_S2	2	582.803955078125	2	582.80402	1163.59349	0.41022	0.00023908	-0.34341	-0.00020014	0.066807	3.8936E-05	582.803845421843	38.365	0.36499	38.272	38.063	38.428	-0.09301					16	6	4	0	0	0	0.0052024	1	14404	14404		135.86	75.79	1	57634000			33239	3420	20973	21087	31995	31995					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	HCT116MG_D190212_S2	2	388.87152099609375	3	388.871772	1163.59349	-0.02671	-1.0387E-05	-0.3231	-0.00012564	-0.34981	-0.00013603	388.87168458133783	38.341	0.31343	38.248	38.115	38.428	-0.093006					12	5	3	0	0	0	0.019537	1	14423	14423		80.896	43.821	1	27437000			33240	3420	20973	21087	31996	31996					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MSMS	HCT116MG_D190212_S3	3	582.8043212890625	2	582.80402	1163.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.718	1	38.417	37.917	38.917	-0.30137								0	0	0	0.76077	1	14352	14352		16.149	5.3252	1				33241	3420	20973	21087	31997	31997					0.018233250123330436
TERETRQEY	9	Unmodified	_TERETRQEY_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	HCT116MG_D190212_S2	2	606.2872924804688	2	606.286191	1210.55783	0.68763	0.0004169	0.0583	3.5347E-05	0.74593	0.00045225	606.2863660618337	17.196	0.2605	16.847	16.717	16.978	-0.34933					6	4	2	0	0	0	0.64246	1	5872	5872		8.7454	1.4562	1	5327600			33242	1024	20974	21088	31998	31998					-0.039027572353234063
TERFRKFQFTW	11	Unmodified	_TERFRKFQFTW_					0	0	0			REV__ENST00000443361.1_1_9:108287470-108288637:+|nuORF	REV__ENST00000443361.1_1_9:108287470-108288637:+|nuORF	MSMS	HCT116MG_D190212_S1	1	773.400390625	2	773.401692	1544.78883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.747	1	47.747	47.247	48.247	0								0	0	0	0.95581	1	18150	18150		3.2813	1.9518	1		+		33243	15658	20975	21089	31999	31999					0.03822915537148219
TERIVTTY	8	Unmodified	_TERIVTTY_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENST00000587329.1_1_19:10909095-10913035:+|nuORF	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	491.763916015625	2	491.763832	981.513111	0.067083	3.2989E-05	0.47664	0.00023439	0.54372	0.00026738	491.76380412903416	30.594	0.20555	30.309	30.233	30.439	-0.28453					6	3	2	0	0	0	0.42581	1	11295	11295		47.749	11.242	1	16996000			33244	718	20976	21090	32000	32000					0.021614636892763883
TERIVTTY	8	Unmodified	_TERIVTTY_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENST00000587329.1_1_19:10909095-10913035:+|nuORF	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	491.7642822265625	2	491.763832	981.513111	0.082376	4.0509E-05	0.065146	3.2036E-05	0.14752	7.2546E-05	491.76409964917946	30.683	0.24665	30.422	30.358	30.604	-0.26071					5	4	2	0	0	0	0.4699	1	11209	11209		43.772	11.655	1	6405600			33245	718	20976	21090	32001	32001					0.021614636892763883
TERLIQEL	8	Unmodified	_TERLIQEL_					0	0	0		ENSG00000198356|ENST00000357332|GET3	ENSG00000198356|ENST00000357332|GET3	ENSG00000198356|ENST00000357332|GET3	MULTI-MSMS	HCT116MG_D190212_S3	3	501.2852783203125	2	501.284931	1000.55531	0.52128	0.00026131	-0.30962	-0.00015521	0.21167	0.00010611	501.28494752651864	43.85	0.31303	43.544	43.396	43.709	-0.30616					12	5	3	0	0	0	0.7524	1	16393	16393		16.942	1.0951	1	8266700			33246	6226	20977	21091	32002	32002					0.055054390976465584
TERLYDFWKFP	11	Unmodified	_TERLYDFWKFP_					0	0	0			REV__nc|ENSG00000011258|Q05BQ5-3|MBTD1	REV__nc|ENSG00000011258|Q05BQ5-3|MBTD1	MSMS	HCT116MG_D190212_S2	2	751.374267578125	2	751.377352	1500.74015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.742	1	26.39	25.89	26.89	-0.35254								0	0	0	0.95113	1	9688	9688		5.7319	2.7366	1		+		33247	10523	20978	21092	32003	32003					0.009810021774001143
TERMYKAY	8	Unmodified	_TERMYKAY_					0	0	0		tr|U7T258|U7T258_FUSNUCyclically-permutedmutarotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00557PE=4SV=1	tr|U7T258|U7T258_FUSNUCyclically-permutedmutarotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00557PE=4SV=1	tr|U7T258|U7T258_FUSNUCyclically-permutedmutarotaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00557PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	354.17572021484375	3	354.507665	1060.50117	-0.21211	-7.5196E-05	-0.1406	-4.9842E-05	-0.35271	-0.00012504	354.5075599687272	28.148	0.15661	27.942	27.811	27.968	-0.20593					4	2	2	0	0	0	0.33021	1	10156	10156		0.40072	0	1	2817000			33248	18566	20979	21093	32004	32004					-0.026664763255666912
TESAFHYEA	9	Unmodified	_TESAFHYEA_					0	0	0		ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant;ITGB4|p.E666Rfs*103|1|0.29|ENSG00000132470|chr17:75737326-75737326|G/-|frameshift_variant;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.P1123Lfs*37|1|0.47|ENSG00000132470|chr17:75750158-75750158|C/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	527.7274780273438	2	527.727446	1053.44034	0.32773	0.00017295	0.15069	7.9525E-05	0.47842	0.00025248	527.7273249274701	32.613	0.20872	32.613	32.482	32.691	0					5	3	2	0	0	0	0.14972	1	12058	12058		48.346	6.2513	1	7520600			33249	3186	20980	21094	32005	32005					-0.08424290104130705
TESAFHYEA	9	Unmodified	_TESAFHYEA_					0	0	0		ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant;nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ITGB4|p.A1304Pfs*140|1|0.27|ENSG00000132470|chr17:75752287-75752287|G/-|frameshift_variant;ITGB4|p.E666Rfs*103|1|0.29|ENSG00000132470|chr17:75737326-75737326|G/-|frameshift_variant;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.P1123Lfs*37|1|0.47|ENSG00000132470|chr17:75750158-75750158|C/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	ITGB4|p.T1720Rfs*13|1|0.05|ENSG00000132470|chr17:75757046-75757052|GACCACT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	527.7274169921875	2	527.727446	1053.44034	0.55178	0.00029119	-0.019361	-1.0217E-05	0.53242	0.00028097	527.7272957339788	32.874	0.2577	32.663	32.482	32.739	-0.21135					9	4	3	0	0	0	0.042978	1	12175	12175		78.149	24.317	1	41825000			33250	3186	20980	21094	32006	32006					-0.08424290104130705
TESDDDDDDD	10	Unmodified	_TESDDDDDDD_					0	0	0		PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant;nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1	PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant	PLCB1|p.S523Ifs*5|1|0.33|ENSG00000182621|chr20:8722400-8722401|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	571.350341796875	2	571.168009	1140.32147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.497	1	20.497	19.997	20.997	0								0	0	0	0.95648	1	7167	7167		3.2813	2.6798	1				33251	5679	20981	21095	32007	32007					-0.24308198380981594
TESDGTPP	8	Unmodified	_TESDGTPP_					0	0	0			REV__nc|ENSG00000170835|P19835-2|CEL	REV__nc|ENSG00000170835|P19835-2|CEL	MSMS	HCT116MG_D190212_S1	1	402.17449951171875	2	402.174515	802.334478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.552	1	20.552	20.052	21.052	0								0	0	0	0.8217	1	7189	7189		20.871	0	1		+		33252	13317	20982	21096	32008	32008					-0.07459625949604742
TESDTFREY	9	Unmodified	_TESDTFREY_					0	0	0			REV__BTK|p.N603D|1|0.34|ENSG00000010671|chrX:101353295-101353295|T/C|missense_variant	REV__BTK|p.N603D|1|0.34|ENSG00000010671|chrX:101353295-101353295|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	574.2501831054688	2	574.248743	1146.48293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.92	1	30.92	30.42	31.42	0								0	0	0	0.71969	1	11358	11358		18.135	5.6034	1		+		33253	10063	20983	21097	32009	32009					-0.084449397665594
TESELDAQY	9	Unmodified	_TESELDAQY_					0	0	0			REV__ENST00000237841.5_1_12:3950645-3951302:+|nuORF	REV__ENST00000237841.5_1_12:3950645-3951302:+|nuORF	MSMS	HCT116MG_D190212_S1	1	528.2306518554688	2	528.230019	1054.44548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.671	1	24.671	24.171	25.171	0								0	0	0	0.768	1	8842	8842		7.9102	0.62092	1		+		33254	12985	20984	21098	32010	32010					-0.07956031032176725
TESEVMKY	8	Unmodified	_TESEVMKY_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MSMS	HCT116MG_D190212_S1	1	493.72900390625	2	493.7286	985.442648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.411	1	29.411	28.911	29.911	0								0	0	0	0.72655	1	10748	10748		28.487	10.352	1				33255	1727	20985	21099	32011	32011					-0.05065577690686496
TESEVMKY	8	Unmodified	_TESEVMKY_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MSMS	HCT116MG_D190212_S2	2	493.7288818359375	2	493.7286	985.442648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.818	1	29.517	29.017	30.017	-0.30095								0	0	0	0.0018363	1	10938	10938		115.69	48.348	1				33256	1727	20985	21099	32012	32012					-0.05065577690686496
TESEVMKY	8	Unmodified	_TESEVMKY_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MSMS	HCT116MG_D190212_S3	3	493.7285461425781	2	493.7286	985.442648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.899	1	29.663	29.163	30.163	-0.23655								0	0	0	0.48722	1	10878	10878		43.858	15.371	1				33257	1727	20985	21099	32013	32013					-0.05065577690686496
TESGNISRQEA	11	Unmodified	_TESGNISRQEA_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.F423Lfs*6|1|0.21|ENSG00000037474|chr5:6609880-6609880|A/-|frameshift_variant;NSUN2|p.Y537Mfs*10|1|0.1|ENSG00000037474|chr5:6605401-6605401|A/-|frameshift_variant;NSUN2|p.S339Vfs*17|1|0.16|ENSG00000037474|chr5:6616733-6616733|T/-|frameshift_variant	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-MSMS	HCT116MG_D190212_S1	1	596.283935546875	2	596.283648	1190.55274	0.69376	0.00041368	-0.28445	-0.00016961	0.40931	0.00024406	596.2834927568683	17.906	0.20859	17.906	17.776	17.985	0					6	3	2	0	0	0	1.3724E-05	1	6141	6141		172.26	108.3	1	14218000			33258	990	20986	21100	32014	32014					-0.0349106109792956
TESGNISRQEA	11	Unmodified	_TESGNISRQEA_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.F423Lfs*6|1|0.21|ENSG00000037474|chr5:6609880-6609880|A/-|frameshift_variant;NSUN2|p.Y537Mfs*10|1|0.1|ENSG00000037474|chr5:6605401-6605401|A/-|frameshift_variant;NSUN2|p.S339Vfs*17|1|0.16|ENSG00000037474|chr5:6616733-6616733|T/-|frameshift_variant	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-MSMS	HCT116MG_D190212_S2	2	596.2839965820312	2	596.283648	1190.55274	0.34062	0.00020311	0.10872	6.4828E-05	0.44935	0.00026794	596.2836956019129	18.398	0.4691	18.035	17.851	18.321	-0.36325					17	8	4	0	0	0	5.5154E-22	1	6321	6321		237.52	143.59	1	73982000			33259	990	20986	21100	32015	32015					-0.0349106109792956
TESGNISRQEA	11	Unmodified	_TESGNISRQEA_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.F423Lfs*6|1|0.21|ENSG00000037474|chr5:6609880-6609880|A/-|frameshift_variant;NSUN2|p.Y537Mfs*10|1|0.1|ENSG00000037474|chr5:6605401-6605401|A/-|frameshift_variant;NSUN2|p.S339Vfs*17|1|0.16|ENSG00000037474|chr5:6616733-6616733|T/-|frameshift_variant	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-MSMS	HCT116MG_D190212_S3	3	596.2838745117188	2	596.283648	1190.55274	0.2695	0.0001607	0.27152	0.0001619	0.54102	0.0003226	596.2837057871491	17.582	0.41637	17.664	17.534	17.95	0.081358					17	7	3	0	0	0	1.1295E-22	1	5917	5917		251.2	147.38	1	31087000			33260	990	20986	21100	32016	32016					-0.0349106109792956
TESGNISRQEA	11	Unmodified	_TESGNISRQEA_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.F423Lfs*6|1|0.21|ENSG00000037474|chr5:6609880-6609880|A/-|frameshift_variant;NSUN2|p.Y537Mfs*10|1|0.1|ENSG00000037474|chr5:6605401-6605401|A/-|frameshift_variant;NSUN2|p.S339Vfs*17|1|0.16|ENSG00000037474|chr5:6616733-6616733|T/-|frameshift_variant	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-MSMS	HCT116MG_D190212_S4	4	596.283935546875	2	596.283648	1190.55274	0.79324	0.000473	0.17373	0.00010359	0.96697	0.00057659	596.2836402785808	17.837	0.46764	17.662	17.428	17.896	-0.17501					13	8	2	0	0	0	0.033687	1	5951	5951		109.15	55.829	1	5550000			33261	990	20986	21100	32017	32017					-0.0349106109792956
TESKEALATP	10	Unmodified	_TESKEALATP_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	MULTI-SECPEP	HCT116MG_D190212_S1	1	524.2406616210938	2	523.771854	1045.52915	0.47997	0.00025139	-0.51824	-0.00027144	-0.03827	-2.0045E-05	523.7715774668372	20.93	0.68877	20.93	20.644	21.333	0					17	12	2	0	0	0	0.27227	1	7433	7433		32.786	10.049	1	2730300			33262	3399	20987	21101	32018	32018					0.008211251355078275
TESKEALATP	10	Unmodified	_TESKEALATP_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	MULTI-SECPEP	HCT116MG_D190212_S2	2	524.240966796875	2	523.771854	1045.52915	0.29455	0.00015427	0.030088	1.5759E-05	0.32463	0.00017003	523.771690507122	21.474	0.77864	21.091	20.807	21.585	-0.38288					23	14	2	0	0	0	0.2501	1	7607	7607		36.506	14.969	1	18492000			33263	3399	20987	21101	32019	32019					0.008211251355078275
TESLLWNIKS	10	Unmodified	_TESLLWNIKS_					0	0	0			REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	REV__tr|U7ST35|U7ST35_FUSNUUvrD-likehelicaseATP-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01268PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	595.8248291015625	2	595.824421	1189.63429	0.6372	0.00037966	-0.39143	-0.00023322	0.24578	0.00014644	595.8240882056991	38.161	0.36277	37.859	37.729	38.092	-0.30137					8	6	2	0	0	0	0.69918	1	14184	14184		20.454	0	1	6064000	+		33264	17785	20988	21102	32020	32020					0.04705666331938119
TESMKMESGSP	11	Unmodified	_TESMKMESGSP_					0	0	0		nc|ENSG00000179348|P23769-2|GATA2;GATA2|p.F428Sfs*49|1|0.22|ENSG00000179348|chr3:128481181-128481181|G/-|frameshift_variant;ENSG00000179348|ENST00000341105|GATA2	nc|ENSG00000179348|P23769-2|GATA2	nc|ENSG00000179348|P23769-2|GATA2	MULTI-SECPEP	HCT116MG_D190212_S2	2	592.25048828125	2	592.252114	1182.48967	0.66493	0.0003938	-0.80883	-0.00047903	-0.1439	-8.5227E-05	592.251142853562	22.702	0.36358	22.317	22.154	22.518	-0.3852					13	6	3	0	0	0	0.36397	1	8101	8101		2.7352	0	1	7709200			33265	5551	20989	21103	32021	32021					-0.09427086201844759
TESPPSLAA	9	Unmodified	_TESPPSLAA_					0	0	0		ENST00000475006.1_1_9:140262369-140269195:-|nuORF;nc|ENSG00000187609|Q8N9H8-4|EXD3;ENSG00000187609|ENST00000340951|EXD3	ENST00000475006.1_1_9:140262369-140269195:-|nuORF	ENST00000475006.1_1_9:140262369-140269195:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	872.4356079101562	1	872.435989	871.428712	0.89717	0.00078272	-0.026322	-2.2964E-05	0.87085	0.00075976	872.4358793265297	32.146	0.57106	31.916	31.683	32.254	-0.23009					18	10	2	0	0	0	0.010304	1	11857	11857		112.59	41.46	1	34440000			33266	5950	20990	21104	32022	32022					-0.01214487127481334
TESPPSLAA	9	Unmodified	_TESPPSLAA_					0	0	0		ENST00000475006.1_1_9:140262369-140269195:-|nuORF;nc|ENSG00000187609|Q8N9H8-4|EXD3;ENSG00000187609|ENST00000340951|EXD3	ENST00000475006.1_1_9:140262369-140269195:-|nuORF	ENST00000475006.1_1_9:140262369-140269195:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	872.4361572265625	1	872.435989	871.428712	0.71078	0.00062011	-0.04433	-3.8675E-05	0.66645	0.00058143	872.4359854179247	32.19	0.72853	31.912	31.682	32.41	-0.27841					30	13	3	0	0	0	0.0054498	1	11774	11774		133.7	62.568	1	24774000			33267	5950	20990	21104	32023	32023					-0.01214487127481334
TESPPSLAA	9	Unmodified	_TESPPSLAA_					0	0	0		ENST00000475006.1_1_9:140262369-140269195:-|nuORF;nc|ENSG00000187609|Q8N9H8-4|EXD3;ENSG00000187609|ENST00000340951|EXD3	ENST00000475006.1_1_9:140262369-140269195:-|nuORF	ENST00000475006.1_1_9:140262369-140269195:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	872.4360961914062	1	872.435989	871.428712	0.69445	0.00060586	0.063028	5.4988E-05	0.75747	0.00066085	872.4359183204335	32.35	0.62287	31.971	31.69	32.312	-0.37924					23	11	3	0	0	0	0.012168	1	11764	11764		108	40.653	1	10538000			33268	5950	20990	21104	32024	32024					-0.01214487127481334
TESPYQELQGQ	11	Unmodified	_TESPYQELQGQ_					0	0	0		ENST00000588439.1_1_19:36395473-36398510:-|nuORF;nc|ENSG00000011600|O43914-3|TYROBP;nc|ENSG00000011600|O43914-2|TYROBP;ENSG00000011600|ENST00000262629|TYROBP	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	ENST00000588439.1_1_19:36395473-36398510:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	640.2748413085938	2	640.293682	1278.57281	0.47336	0.00030309	0.0026052	1.6681E-06	0.47596	0.00030475	640.2936460361059	31.482	1.3562	31.212	30.23	31.586	-0.27027					70	29	3	0	0	0	0.33458	1	11257	11257		24.991	0	1	13755000			33269	900	20991	21105	32025	32025					-0.055333101579890354
TESRHRPP	8	Unmodified	_TESRHRPP_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MSMS	HCT116MG_D190212_S1	1	490.25836181640625	2	490.25704	978.499526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.444	1	19.444	18.944	19.944	0								0	0	0	0.8837	1	6743	6743		15.768	0	1		+		33270	13124	20992	21106	32026	32026					0.009416507007017572
TESRLEPDPAG	11	Unmodified	_TESRLEPDPAG_					0	0	0		SHD|p.A49T|1|0.44|ENSG00000105251|chr19:4280208-4280208|G/A|missense_variant	SHD|p.A49T|1|0.44|ENSG00000105251|chr19:4280208-4280208|G/A|missense_variant	SHD|p.A49T|1|0.44|ENSG00000105251|chr19:4280208-4280208|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	585.780517578125	2	586.283117	1170.55168	0.60317	0.00035363	3.1373	0.0018394	3.7405	0.002193	586.7875554930704	29.084	0.52057	28.863	28.629	29.15	-0.22195					23	9	5	0	0	0	0.33998	1	10520	10520		11.495	0	1	29820000			33271	18150	20993	21107	32027	32027					-0.026772754668627385
TESSFHEQP	9	Unmodified	_TESSFHEQP_					0	0	0			REV__TBX19|p.S376Tfs*13|1|0.16|ENSG00000143178|chr1:168312782-168312782|G/-|frameshift_variant	REV__TBX19|p.S376Tfs*13|1|0.16|ENSG00000143178|chr1:168312782-168312782|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	531.2327880859375	2	531.230353	1060.44615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.553	1	21.334	20.834	21.834	-0.21832								0	0	0	0.76575	1	7447	7447		15.847	1.0089	1		+		33272	17619	20994	21108	32028	32028					-0.0816519159247946
TESSHFYSA	9	Unmodified	_TESSHFYSA_					0	0	0		ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	ENSG00000111266|ENST00000298573|DUSP16	MSMS	HCT116MG_D190212_S1	1	514.7202758789062	2	514.719621	1027.42469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.233	1	27.233	26.733	27.733	0								0	0	0	0.1044	1	9873	9873		54.774	25.692	1				33273	2282	20995	21109	32029	32029					-0.0879257662118107
TESVSQPFPQ	10	Unmodified	_TESVSQPFPQ_					0	0	0			REV__HRG|p.S503T|1|0.36|ENSG00000113905|chr3:186677812-186677812|T/A|missense_variant	REV__HRG|p.S503T|1|0.36|ENSG00000113905|chr3:186677812-186677812|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	560.2698364257812	2	560.269478	1118.5244	0.29629	0.000166	2.2609	0.0012667	2.5572	0.0014327	560.269847421103	22.87	0.30001	22.851	22.699	22.999	-0.018869					12	5	3	0	0	0	0.72678	1	8060	8060		18.146	2.2992	1	5552000	+		33274	16890	20996	21110	32030	32030					-0.03011759007222281
TETEMFEKY	9	Unmodified	_TETEMFEKY_					0	0	0		ENSG00000103021|ENST00000219299|CCDC113;nc|ENSG00000103021|Q9H0I3-2|CFAP263	ENSG00000103021|ENST00000219299|CCDC113	ENSG00000103021|ENST00000219299|CCDC113	MULTI-SECPEP	HCT116MG_D190212_S2	2	589.778076171875	2	589.257722	1176.50089	0.52195	0.00030756	0.42234	0.00024887	0.94429	0.00055643	589.2577112981397	38.492	0.26472	38.408	38.227	38.492	-0.084618					7	4	2	0	0	0	0.055733	1	14477	14477		86.332	86.332	1	15888000			33275	1868	20997	21111	32031	32031					-0.08029940836058813
TETETIAKY	9	Unmodified	_TETETIAKY_					0	0	0		ENSG00000122958|ENST00000263559|VPS26A;nc|ENSG00000122958|O75436-2|VPS26A	ENSG00000122958|ENST00000263559|VPS26A	ENSG00000122958|ENST00000263559|VPS26A	MULTI-MSMS	HCT116MG_D190212_S1	1	528.2659912109375	2	528.266404	1054.51826	0.55092	0.00029103	-1.2183	-0.00064357	-0.66734	-0.00035253	528.2656071168494	28.253	0.47427	28.253	28.06	28.535	0					11	8	2	0	0	0	0.14972	1	10289	10289		48.346	17.709	1	15464000			33276	2784	20998	21112	32032	32032					-0.006822772387522491
TETETIAKY	9	Unmodified	_TETETIAKY_					0	0	0		ENSG00000122958|ENST00000263559|VPS26A;nc|ENSG00000122958|O75436-2|VPS26A	ENSG00000122958|ENST00000263559|VPS26A	ENSG00000122958|ENST00000263559|VPS26A	MULTI-MSMS	HCT116MG_D190212_S2	2	528.265380859375	2	528.266404	1054.51826	0.37591	0.00019858	-0.74612	-0.00039415	-0.37021	-0.00019557	528.2659252236913	28.693	0.25517	28.377	28.198	28.453	-0.31613					7	4	2	0	0	0	0.0050238	1	10484	10484		137.42	69.343	1	60519000			33277	2784	20998	21112	32033	32033					-0.006822772387522491
TETETIAKY	9	Unmodified	_TETETIAKY_					0	0	0		ENSG00000122958|ENST00000263559|VPS26A;nc|ENSG00000122958|O75436-2|VPS26A	ENSG00000122958|ENST00000263559|VPS26A	ENSG00000122958|ENST00000263559|VPS26A	MSMS	HCT116MG_D190212_S3	3	528.2662963867188	2	528.266404	1054.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.689	1	28.483	27.983	28.983	-0.20593								0	0	0	0.033127	1	10392	10392		79.596	11.516	1				33278	2784	20998	21112	32034	32034					-0.006822772387522491
TETHKQYSR	9	Unmodified	_TETHKQYSR_					0	0	0			REV__ENST00000455957.5_1_6:30201906-30202163:-|nuORF	REV__ENST00000455957.5_1_6:30201906-30202163:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	575.2570190429688	2	575.285994	1148.55744	0.42743	0.00024589	-1.0275	-0.00059108	-0.60003	-0.00034519	575.2852041284561	23.713	0.57325	23.655	23.482	24.055	-0.057926					16	10	3	0	0	0	0.24622	1	8393	8393		1.6526	0	1	4593000	+		33279	15745	20999	21113	32035	32035					-0.010901321645178541
TETPEAIT	8	Unmodified	_TETPEAIT_					0	0	0		tr|U7T1K4|U7T1K4_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00847PE=4SV=1	tr|U7T1K4|U7T1K4_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00847PE=4SV=1	tr|U7T1K4|U7T1K4_FUSNUCyclohexadienyldehydrataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00847PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	431.21356201171875	2	431.21364	860.412728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.827	1	25.537	25.037	26.037	-0.29022								0	0	0	0.8396	1	9172	9172		19.439	0	1				33280	18558	21000	21114	32036	32036					-0.023061933643930388
TETVNHHY	8	Unmodified	_TETVNHHY_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	HCT116MG_D190212_S1	1	500.72772216796875	2	500.727781	999.441008	0.37097	0.00018576	-1.8503	-0.00092649	-1.4793	-0.00074073	500.7268301428778	16.603	0.20821	16.603	16.473	16.681	0					5	3	2	0	0	0	0.46267	1	5614	5614		44.407	10.305	1	1682600			33281	2451	21001	21115	32037	32037					-0.058734506644327666
TETVTKSY	8	Unmodified	_TETVTKSY_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;CALD1|p.S660Afs*12|1|0.15|ENSG00000122786|chr7:134958108-134958108|A/-|frameshift_variant;ENSG00000122786|ENST00000361675|CALD1;CALD1|p.E461Rfs*6|1|0.18|ENSG00000122786|chr7:134935753-134935754|-/A|frameshift_variant;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	464.7345886230469	2	464.73474	927.454927	0.13618	6.3286E-05	-1.2014	-0.00055833	-1.0652	-0.00049504	464.73409766743305	21.319	0.25849	20.936	20.807	21.065	-0.38288					7	4	2	0	0	0	0.38307	1	7510	7510		51.63	19.324	1	8439700			33282	315	21002	21116	32038	32038					-0.011702179559961223
TETVVTEY	8	Unmodified	_TETVVTEY_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;EIF4G2|p.S788Afs*15|1|0.36|ENSG00000110321|chr11:10799388-10799388|G/-|frameshift_variant;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	HCT116MG_D190212_S3	3	941.446533203125	1	941.446219	940.438943	0.498	0.00046884	-0.10951	-0.0001031	0.38849	0.00036574	941.4461301394743	34.971	0.25993	34.674	34.492	34.752	-0.29707					8	4	2	0	0	0	0.19622	1	12900	12900		74.396	24.727	1	3783500			33283	2243	21003	21117	32039	32039					-0.03365924192894454
TEVAPPPPP	9	Unmodified	_TEVAPPPPP_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	452.7423095703125	2	452.742368	903.470183	0.042965	1.9452E-05	-0.018506	-8.3783E-06	0.024459	1.1074E-05	452.742301199859	29.768	0.41578	29.768	29.581	29.997	0					17	7	3	0	0	0	0.0050053	1	10893	10893		137.59	22.641	1	23436000			33284	428	21004	21118	32040	32040					0.014586936318551125
TEVAPPPPP	9	Unmodified	_TEVAPPPPP_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	904.4796142578125	1	904.47746	903.470183	0.71581	0.00064744	0.30568	0.00027648	1.0215	0.00092392	904.4777958479131	29.781	0.31184	29.781	29.633	29.945	0					10	5	2	0	0	0	0.0066639	2	10908	10908;10949		123.1	21.374	1	12450000			33285	428	21004	21118	32041;32042	32041					0.014586936318551125
TEVAPPPPP	9	Unmodified	_TEVAPPPPP_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	452.7427062988281	2	452.742368	903.470183	-0.20767	-9.4023E-05	0.43945	0.00019896	0.23178	0.00010494	452.74245377220063	30.132	0.7714	29.848	29.564	30.335	-0.28453					27	14	4	0	0	0	0.0066639	1	11028	11028		123.1	13.467	1	96807000			33286	428	21004	21118	32043	32043					0.014586936318551125
TEVAPPPPP	9	Unmodified	_TEVAPPPPP_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	904.4776611328125	1	904.47746	903.470183	0.45935	0.00041547	0.75066	0.00067896	1.21	0.0010944	904.4780454331764	30.148	0.56662	29.863	29.564	30.13	-0.28453					20	10	3	0	0	0	0.0035314	1	11034	11034		170.4	47.301	1	79658000			33287	428	21004	21118	32044	32044					0.014586936318551125
TEVAPPPPP	9	Unmodified	_TEVAPPPPP_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	452.7426452636719	2	452.742368	903.470183	0.23421	0.00010604	0.12665	5.7341E-05	0.36086	0.00016338	452.74234881973086	30.172	0.31394	29.923	29.755	30.069	-0.24946					12	5	3	0	0	0	0.0066639	1	10979	10979		123.1	0	1	13054000			33288	428	21004	21118	32045	32045					0.014586936318551125
TEVAPPPPP	9	Unmodified	_TEVAPPPPP_					0	0	0		CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.L1404Ffs*9|1|0.42|ENSG00000111642|chr12:6582872-6582873|-/A|frameshift_variant;CHD4|p.L946Tfs*3|1|0.2|ENSG00000111642|chr12:6592505-6592506|-/T|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	CHD4|p.N1569Ifs*9|1|0.44|ENSG00000111642|chr12:6581364-6581364|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	904.47802734375	1	904.47746	903.470183	0.76629	0.0006931	1.7881	0.0016173	2.5544	0.0023104	904.4791884082368	30.225	0.31394	29.976	29.755	30.069	-0.24946					10	5	2	0	0	0	0.0038257	1	10985	10985		153.26	43.633	1	8473700			33289	428	21004	21118	32046	32046					0.014586936318551125
TEVDKQEFF	9	Unmodified	_TEVDKQEFF_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MSMS	HCT116MG_D190212_S3	3	571.771484375	2	571.771854	1141.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.85	1	54.555	54.055	55.055	-0.29587								0	0	0	0.74436	1	20793	20793		16.942	0	1		+		33290	13076	21005	21119	32047	32047					-0.03594874864461417
TEVGHVIRY	9	Unmodified	_TEVGHVIRY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	537.2901611328125	2	537.290548	1072.56654	0.42331	0.00022744	0.18056	9.7015E-05	0.60388	0.00032446	537.2902519714754	29.741	0.20753	29.741	29.633	29.841	0					5	3	2	0	0	0	0.17033	1	10903	10903		55.503	32.354	1	7642200			33291	1439	21006	21120	32048	32048					0.033162611917987306
TEVGHVIRY	9	Unmodified	_TEVGHVIRY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	358.52923583984375	3	358.529458	1072.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.778	1	29.778	29.278	30.278	0								0	0	0	0.60272	1	10896	10896		23.79	12.99	1				33292	1439	21006	21120	32049	32049					0.033162611917987306
TEVGHVIRY	9	Unmodified	_TEVGHVIRY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2909545898438	2	537.290548	1072.56654	0.12024	6.4601E-05	0.58545	0.00031456	0.70569	0.00037916	537.290773177449	30.135	0.20628	29.85	29.718	29.925	-0.28453					7	3	3	0	0	0	0.13387	1	11094	11094		63.961	47.018	1	28862000			33293	1439	21006	21120	32050	32050					0.033162611917987306
TEVGHVIRY	9	Unmodified	_TEVGHVIRY_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	358.52947998046875	3	358.529458	1072.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.212	1	29.928	29.428	30.428	-0.28453								0	0	0	0.71477	1	11098	11098		18.373	4.7582	1				33294	1439	21006	21120	32051	32051					0.033162611917987306
TEVGTEKLD	9	Unmodified	_TEVGTEKLD_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	HCT116MG_D190212_S2	2	991.4725341796875	1	991.494232	990.486955	0.76502	0.00075851	0.55507	0.00055035	1.3201	0.0013089	991.4946340419845	54.813	0.1539	54.625	54.509	54.662	-0.18797					4	2	2	0	0	0	0.32162	1	21067	21067		28.487	5.3384	1	8097500			33295	3078	21007	21121	32052	32052					-0.00866850272859665
TEVKSVEM	8	Oxidation (M)	_TEVKSVEM(Oxidation (M))_		TEVKSVEM(1)		TEVKSVEM(120)	0	0	1		ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	469.7286682128906	2	469.7286	937.442648	0.36356	0.00017078	-0.52723	-0.00024766	-0.16367	-7.6881E-05	469.72841657303485	17.945	0.31283	17.945	17.776	18.089	0					11	5	3	0	0	0	0.051049	1	6138	6138		122.18	60.822	1	5563900			33296	1764	21008	21122	32053	32053		33			-0.02857577690679136
TEVKSVEM	8	Oxidation (M)	_TEVKSVEM(Oxidation (M))_		TEVKSVEM(1)		TEVKSVEM(130)	0	0	1		ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	469.7286071777344	2	469.7286	937.442648	-0.099481	-4.6729E-05	0.027705	1.3014E-05	-0.071777	-3.3716E-05	469.7285746337337	18.375	0.36591	18.012	17.851	18.217	-0.36325					20	6	5	0	0	0	0.040608	1	6324	6324		134.3	63.162	1	12951000			33297	1764	21008	21122	32054	32054		33			-0.02857577690679136
TEVKSVEM	8	Oxidation (M)	_TEVKSVEM(Oxidation (M))_		TEVKSVEM(1)		TEVKSVEM(58)	0	0	1		ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	469.7286071777344	2	469.7286	937.442648	-0.10566	-4.9631E-05	0.071254	3.347E-05	-0.034405	-1.6161E-05	469.72850096190115	17.567	0.25987	17.649	17.482	17.742	0.081358					8	4	2	0	0	0	0.31597	1	5925	5925		57.722	25.416	1	3295300			33298	1764	21008	21122	32055	32055		33			-0.02857577690679136
TEVKSVEM	8	Unmodified	_TEVKSVEM_					0	0	0		ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	462.1464538574219	2	461.731143	921.447733	0.14034	6.4801E-05	0.047594	2.1976E-05	0.18794	8.6777E-05	461.73117858249157	27.618	0.46687	27.618	27.49	27.956	0					16	8	3	0	0	0	0.27349	1	10033	10033		30.225	20.151	1	33261000			33299	1764	21008	21123	32056	32056					-0.01613273828070305
TEVKSVEM	8	Unmodified	_TEVKSVEM_					0	0	0		ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	462.14666748046875	2	461.731143	921.447733	0.36231	0.00016729	-0.069991	-3.2317E-05	0.29232	0.00013497	461.7309882826859	27.993	0.6257	27.805	27.621	28.246	-0.18847					23	11	3	0	0	0	0.62424	1	10113	10113		30.225	12.09	1	36287000			33300	1764	21008	21123	32057	32057					-0.01613273828070305
TEVKSVEM	8	Unmodified	_TEVKSVEM_					0	0	0		ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	922.4546508789062	1	922.45501	921.447733	0.80523	0.00074279	0.17502	0.00016145	0.98025	0.00090424	922.4551884650213	27.991	0.31257	27.803	27.673	27.985	-0.18847					7	5	2	0	0	0	0.22303	1	10131	10131		69.105	29.148	1	4690900			33301	1764	21008	21123	32058	32058					-0.01613273828070305
TEVKSVEM	8	Unmodified	_TEVKSVEM_					0	0	0		ENST00000547505.2_1_12:44054314-44054545:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	ENST00000547505.2_1_12:44054314-44054545:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		1	922.45501	921.447733	0.88139	0.00081304	-0.39775	-0.0003669	0.48364	0.00044614	922.4548669665231	28.126	0.31115	27.796	27.615	27.926	-0.32987	-0.003436	-0.00029456	NaN	69.105	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27094000			33302	1764	21008	21123							-0.01613273828070305
TEVRKKLHEVR	11	Unmodified	_TEVRKKLHEVR_					0	0	0			REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	MULTI-SECPEP	HCT116MG_D190212_S1	1	697.916015625	2	697.914967	1393.81538	0.90493	0.00063157	0.31014	0.00021645	1.2151	0.00084802	697.9150376622931	28.139	0.20785	28.139	28.008	28.216	0					5	3	2	0	0	0	0.36423	1	10259	10259		2.4985	0	1	7981300	+		33303	11753	21009	21124	32059	32059					0.13422604428501472
TEVSPKTAE	9	Unmodified	_TEVSPKTAE_					0	0	0		ENSG00000205838|ENST00000505624|TTC23L;nc|ENSG00000205838|Q6PF05-3|TTC23L	ENSG00000205838|ENST00000505624|TTC23L	ENSG00000205838|ENST00000505624|TTC23L	MULTI-MSMS	HCT116MG_D190212_S2	2	481.2454528808594	2	481.245472	960.476391	0.041851	2.014E-05	0.61296	0.00029499	0.65481	0.00031513	481.24574083206585	19.075	0.57283	18.706	18.263	18.836	-0.3695					19	10	3	0	0	0	0.02327	1	6619	6619		93.166	4.8022	1	9998600			33304	6389	21010	21125	32060	32060					-0.0054283292729451205
TEWLHEVL	8	Unmodified	_TEWLHEVL_					0	0	0		QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant;ENSG00000198218|ENST00000395443|QRICH1;ENST00000479449.1_1_3:49070551-49094468:-|nuORF	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	QRICH1|p.N735Tfs*20|1|0.28|ENSG00000198218|chr3:49030581-49030581|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7665405273438	2	513.766374	1025.5182	0.42426	0.00021797	-0.54272	-0.00027883	-0.11846	-6.0859E-05	513.7658465656303	52.259	0.46437	52.072	51.935	52.399	-0.18726					13	8	3	0	0	0	0.067369	1	20091	20091		104.8	57.878	1	22862000			33305	6215	21011	21126	32061	32061					0.0064576755189591495
TEWLHVGLWWW	11	Unmodified	_TEWLHVGLWWW_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	504.279541015625	3	504.918945	1511.73501	0.38108	0.00019242	-1.969	-0.00099419	-1.5879	-0.00080178	505.2518692442591	26.629	0.25948	26.267	26.128	26.387	-0.36164					8	4	3	0	0	0	0.36554	1	9648	9648		2.6312	0.19645	1	6771200			33306	8450	21012	21127	32062	32062					-0.0003925689452444203
TEWLHVGLWWW	11	Unmodified	_TEWLHVGLWWW_					0	0	0		ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	ENST00000505526.1_1_5:271863-311637:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	504.918945	1511.73501	0.48255	0.00024365	-1.5324	-0.00077373	-1.0498	-0.00053008	504.91816264228964	26.271	0.41732	26.271	25.98	26.397	0	0.0019948	3.5778E-05	NaN	1.2148	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25497000			33307	8450	21012	21127							-0.0003925689452444203
TEWRSFRF	8	Unmodified	_TEWRSFRF_					0	0	0		ENST00000285737.8_1_16:48330010-48333596:+|nuORF	ENST00000285737.8_1_16:48330010-48333596:+|nuORF	ENST00000285737.8_1_16:48330010-48333596:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	564.359130859375	2	564.78289	1127.55123	0.16866	9.5257E-05	-0.71863	-0.00040587	-0.54997	-0.00031061	564.7824205985195	39.912	0.20824	39.912	39.813	40.021	0					5	3	2	0	0	0	0.33021	1	14978	14978		5.7604	1.0044	1	3393400			33308	6950	21013	21128	32063	32063					-0.007446056053822758
TEWSQPRF	8	Unmodified	_TEWSQPRF_					0	0	0		ENSG00000198554|ENST00000360586|WDHD1;nc|ENSG00000198554|O75717-2|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	ENSG00000198554|ENST00000360586|WDHD1	MSMS	HCT116MG_D190212_S2	2	525.7523803710938	2	525.753798	1049.49304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.421	1	41.352	40.852	41.852	-0.068199								0	0	0	0.44863	1	15650	15650		46.021	1.6139	1				33309	6240	21014	21129	32064	32064					-0.029722872506681597
TEYCCYGDL	9	Unmodified	_TEYCCYGDL_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R;ENST00000512959.1_1_4:55595508-55599400:+|nuORF;ENSG00000157404|ENST00000288135|KIT;nc|ENSG00000157404|P10721-2|KIT	ENSG00000182578|ENST00000675795|CSF1R;ENSG00000157404|ENST00000288135|KIT	ENSG00000182578|ENST00000675795|CSF1R	MSMS	HCT116MG_D190212_S1	1	356.13397216796875	3	356.133387	1065.37833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.704	1	45.704	45.204	46.204	0								0	0	0	0.76991	1	17322	17322		1.1933	0	1				33310	5676;4325	21015	21130	32065	32065					-0.15174100839135463
TEYISTEF	8	Unmodified	_TEYISTEF_					0	0	0		ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1	ENSG00000006712|ENST00000221265|PAF1	ENSG00000006712|ENST00000221265|PAF1	MULTI-MSMS	HCT116MG_D190212_S3	3	989.4471435546875	1	989.446219	988.438943	0.69963	0.00069225	-0.12099	-0.00011971	0.57864	0.00057253	989.4457064313941	47.127	0.26065	46.813	46.646	46.907	-0.31405					7	4	2	0	0	0	0.13911	1	17714	17714		86.121	41.714	1	3497800			33311	835	21016	21131	32066	32066					-0.05573924192890445
TEYKNEEY	8	Unmodified	_TEYKNEEY_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.R102I|1|0.43|ENSG00000083896|chr4:68337726-68337726|C/A|missense_variant	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MSMS	HCT116MG_D190212_S1	1	538.232421875	2	538.232561	1074.45057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.729	1	21.729	21.229	22.229	0								0	0	0	6.7521E-10	1	7658	7658		160.52	95.281	1				33312	1440	21017	21132	32067	32067					-0.08367727169547834
TEYKNEEY	8	Unmodified	_TEYKNEEY_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.R102I|1|0.43|ENSG00000083896|chr4:68337726-68337726|C/A|missense_variant	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.2325439453125	2	538.232561	1074.45057	0.52535	0.00028276	-0.17355	-9.3412E-05	0.3518	0.00018935	538.232275059333	22.15	0.31238	21.765	21.583	21.896	-0.38503					13	5	3	0	0	0	0.065113	1	7854	7854		107.19	65.092	1	50166000			33313	1440	21017	21132	32068	32068					-0.08367727169547834
TEYKNEEY	8	Unmodified	_TEYKNEEY_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.R102I|1|0.43|ENSG00000083896|chr4:68337726-68337726|C/A|missense_variant	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2325439453125	2	538.232561	1074.45057	0.44479	0.0002394	-0.1431	-7.7023E-05	0.30168	0.00016238	538.2324238827763	21.614	0.31665	21.632	21.483	21.799	0.018446					12	5	3	0	0	0	0.036435	1	7555	7555		139.14	81.667	1	12243000			33314	1440	21017	21132	32069	32069					-0.08367727169547834
TFAFEDMVGS	10	Unmodified	_TFAFEDMVGS_					0	0	0			REV__tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	REV__tr|U7T6W5|U7T6W5_FUSNUCarboxyltransferasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00031PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	552.741943359375	2	552.239332	1102.46411	0.26109	0.00014418	-0.079901	-4.4125E-05	0.18119	0.00010006	552.7414935425994	40.001	0.2743	39.7	39.629	39.903	-0.30137					10	6	2	0	0	0	0.78781	1	14902	14902		13.042	2.8591	1	5042300	+		33315	18003	21018	21133	32070	32070					-0.08302192661972185
TFAVPPSS	8	Unmodified	_TFAVPPSS_					0	0	0			REV__nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F	REV__nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F	MULTI-SECPEP	HCT116MG_D190212_S3	3	403.73956298828125	2	403.208161	804.401769	-0.14603	-5.888E-05	0.8788	0.00035434	0.73277	0.00029546	403.20828239185255	47.455	0.60966	47.14	46.905	47.515	-0.31525					18	12	2	0	0	0	0.33109	1	17752	17752		5.2307	0	1	8355200	+		33316	10615	21019	21134	32071	32071					-0.008255509479909051
TFCSKLRLS	9	Unmodified	_TFCSKLRLS_					0	0	0			REV__nc|ENSG00000184371|P09603-2|CSF1	REV__nc|ENSG00000184371|P09603-2|CSF1	MSMS	HCT116MG_D190212_S4	4	352.19635009765625	3	352.19531	1053.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.184	1	41.808	41.308	42.308	-0.37565								0	0	0	0.76886	1	15495	15495		4.897	0	1		+		33317	13794	21020	21135	32072	32072					0.03946089462488089
TFDTMFSTNY	10	Unmodified	_TFDTMFSTNY_					0	0	0		IGSF21|p.A77T|1|0.22|ENSG00000117154|chr1:18291911-18291911|G/A|missense_variant	IGSF21|p.A77T|1|0.22|ENSG00000117154|chr1:18291911-18291911|G/A|missense_variant	IGSF21|p.A77T|1|0.22|ENSG00000117154|chr1:18291911-18291911|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	613.5946044921875	2	613.755346	1225.49614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.809	1	49.645	49.145	50.145	-0.16369								0	0	0	0.86471	1	19074	19074		20.454	9.6297	1				33318	9234	21021	21136	32073	32073					-0.10758824978802295
TFEKGCDECK	10	Unmodified	_TFEKGCDECK_					0	0	0			REV__nc|ENSG00000116809|Q13105-3|ZBTB17	REV__nc|ENSG00000116809|Q13105-3|ZBTB17	MSMS	HCT116MG_D190212_S4	4	580.2401733398438	2	580.241549	1158.46855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.119	1	51.773	51.273	52.273	-0.34538								0	0	0	0.90475	1	19419	19419		14.838	2.3067	1		+		33319	11595	21022	21137	32074	32074					-0.10435051510739868
TFEVFLVRRFR	11	Unmodified	_TFEVFLVRRFR_					0	0	0			REV__ENST00000537866.5_1_16:57220785-57220833:+|nuORF	REV__ENST00000537866.5_1_16:57220785-57220833:+|nuORF	MSMS	HCT116MG_D190212_S3	3	735.0457153320312	2	735.422428	1468.8303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.974	1	54.682	54.182	55.182	-0.2918								0	0	0	0.92235	1	20843	20843		17.113	8.9574	1		+		33320	16353	21023	21138	32075	32075					0.1146409629648133
TFFEPALAGP	10	Unmodified	_TFFEPALAGP_					0	0	0			REV__HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	REV__HELZ2|p.P1310Rfs*32|1|0.09|ENSG00000130589|chr20:63564893-63564893|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	525.2667846679688	2	525.26875	1048.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.618	1	30.341	29.841	30.841	-0.27644								0	0	0	0.84381	1	11264	11264		23.148	5.0021	1		+		33321	11932	21024	21139	32076	32076					0.00062651694656779
TFFGLASMLI	10	Unmodified	_TFFGLASMLI_					0	0	0		ENST00000595460.1_1_19:47126615-47127509:-|nuORF;ENSG00000160013|ENST00000291294|PTGIR	ENST00000595460.1_1_19:47126615-47127509:-|nuORF	ENST00000595460.1_1_19:47126615-47127509:-|nuORF	MSMS	HCT116MG_D190212_S3	3	550.297119140625	2	550.296453	1098.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.402	1	22.394	21.894	22.894	-0.0074577								0	0	0	0.95507	1	7857	7857		3.5965	0	1				33322	4429	21025	21140	32077	32077					0.033007418907800457
TFFINFKLAII	11	Unmodified	_TFFINFKLAII_					0	0	0		tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	1326.783447265625	1	1326.78202	1325.77475	0.63755	0.00084589	1.2585	0.0016697	1.896	0.0025156	1326.7834933095783	51.781	0.57584	51.781	51.652	52.228	0					12	10	2	0	0	0	0.74191	1	19828	19828		1.3295	0	1	10910000			33323	18473	21026	21141	32078	32078					0.12488870056176893
TFFKAEAAF	9	Unmodified	_TFFKAEAAF_					0	0	0			REV__SND1|p.A514Qfs*156|1|0.37|ENSG00000197157|chr7:127929195-127929195|A/-|frameshift_variant;REV__ENSG00000197157|ENST00000354725|SND1	REV__ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	HCT116MG_D190212_S3	3	516.2638549804688	2	516.263468	1030.51238	0.18694	9.6511E-05	-0.89774	-0.00046347	-0.71079	-0.00036696	516.7643157087783	36.859	0.41595	36.558	36.301	36.717	-0.30113					11	7	2	0	0	0	0.34272	1	13642	13642		26.268	3.5319	1	7172200	+		33324	17537;14061	21027	21142	32079	32079					-0.0016533095979411883
TFGFLPKMHTF	11	Unmodified	_TFGFLPKMHTF_					0	0	0		ENST00000494667.5_1_2:37495372-37495513:-|nuORF	ENST00000494667.5_1_2:37495372-37495513:-|nuORF	ENST00000494667.5_1_2:37495372-37495513:-|nuORF	MSMS	HCT116MG_D190212_S4	4	663.3424072265625	2	663.339184	1324.66381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.773	1	28.433	27.933	28.933	-0.34059								0	0	0	0.94538	1	10362	10362		8.7454	0.58988	1				33325	8372	21028	21143	32080	32080					0.014469070764334901
TFGLFNIDECS	11	Unmodified	_TFGLFNIDECS_					0	0	0			REV__ENSG00000196844|ENST00000358524|PATE2	REV__ENSG00000196844|ENST00000358524|PATE2	MSMS	HCT116MG_D190212_S1	1	623.2784423828125	2	623.276446	1244.53834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.751	1	51.751	51.251	52.251	0								0	0	0	0.95196	1	19780	19780		5.2969	0.39987	1		+		33326	14048	21029	21144	32081	32081					-0.07414849570432125
TFHHEGPD	8	Unmodified	_TFHHEGPD_					0	0	0			REV__nc|ENSG00000054983|P54803-5|GALC	REV__nc|ENSG00000054983|P54803-5|GALC	MSMS	HCT116MG_D190212_S2	2	470.2021484375	2	470.201399	938.388245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.502	1	63.379	62.879	63.879	-0.12264								0	0	0	0.8837	1	24614	24614		2.5775	0	1		+		33327	10641	21030	21145	32082	32082					-0.0834140872724447
TFHLATRKFL	10	Unmodified	_TFHLATRKFL_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.H1521Pfs*95|1|0.12|ENSG00000163939|chr3:52554771-52554772|-/G|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;PBRM1|p.L1349Wfs*35|1|0.5|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;ENST00000462207.1_1_3:52620428-52643468:-|nuORF	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MSMS	HCT116MG_D190212_S4	4	617.356689453125	2	617.358765	1232.70298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.961	1	51.616	51.116	52.116	-0.34538								0	0	0	0.92272	1	19355	19355		10.824	0.75	1				33328	4651	21031	21146	32083	32083					0.09593375422309691
TFHSRIMSPK	10	Unmodified	_TFHSRIMSPK_					0	0	0			REV__nc|ENSG00000136895|Q5VVW2-5|GARNL3	REV__nc|ENSG00000136895|Q5VVW2-5|GARNL3	MULTI-SECPEP	HCT116MG_D190212_S1	1	601.5188598632812	2	602.318783	1202.62301	0.41301	0.00024876	-0.62455	-0.00037618	-0.21154	-0.00012741	602.3182146698964	51.712	0.20629	51.712	51.549	51.756	0					5	3	2	0	0	0	0.30895	1	19702	19702		3.2813	0	1	10957000	+		33329	12149	21032	21147	32084	32084					0.02980565756820397
TFIESFGHDQY	11	Unmodified	_TFIESFGHDQY_					0	0	0			REV__ENSG00000137225|ENST00000398776|CAPN11	REV__ENSG00000137225|ENST00000398776|CAPN11	MSMS	HCT116MG_D190212_S2	2	672.29931640625	2	672.298767	1342.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.073	1	26.721	26.221	27.221	-0.35254								0	0	0	0.93552	1	9819	9819		13.906	0.86358	1		+		33330	12167	21033	21148	32085	32085					-0.07460702432740618
TFIMAFKNI	9	Unmodified	_TFIMAFKNI_					0	0	0			REV__nc|ENSG00000145860|Q96MT1-4|RNF145	REV__nc|ENSG00000145860|Q96MT1-4|RNF145	MSMS	HCT116MG_D190212_S3	3	362.20159912109375	3	362.200172	1083.57869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.133	1	33.839	33.339	34.339	-0.29419								0	0	0	0.76818	1	12553	12553		7.609	1.8771	1		+		33331	17156	21034	21149	32086	32086					0.040241616106186484
TFKARNPNE	9	Unmodified	_TFKARNPNE_					0	0	0		nc|ENSG00000107554|Q6XZF7-2|DNMBP;ENSG00000107554|ENST00000324109|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	MSMS	HCT116MG_D190212_S1	1	359.7081604003906	3	359.520962	1075.54106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.803	1	20.803	20.303	21.303	0								0	0	0	0.76739	1	7290	7290		6.6304	1.7334	1				33332	2116	21035	21150	32087	32087					0.006307866693759934
TFKHERRRFCH	11	Unmodified	_TFKHERRRFCH_					0	0	0			REV__ENST00000266880.11_1_12:133417602-133417977:-|nuORF	REV__ENST00000266880.11_1_12:133417602-133417977:-|nuORF	MSMS	HCT116MG_D190212_S4	4	758.8895874023438	2	758.888761	1515.76297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.597	1	52.257	51.757	52.757	-0.34023								0	0	0	0.95954	1	19612	19612		1.3295	0	1		+		33333	14680	21036	21151	32088	32088					0.02571742813893252
TFKKCKKIYIY	11	Unmodified	_TFKKCKKIYIY_					0	0	0		ENST00000576696.2_1_13:24041102-24041303:+|nuORF;ENST00000575689.4_1_13:24041048-24044692:+|nuORF	ENST00000576696.2_1_13:24041102-24041303:+|nuORF	ENST00000576696.2_1_13:24041102-24041303:+|nuORF	MSMS	HCT116MG_D190212_S3	3	478.94342041015625	3	478.944103	1433.81048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.93	1	52.623	52.123	53.123	-0.30639								0	0	0	0.96111	1	20021	20021		0.50596	0.051438	1				33334	8919	21037	21152	32089	32089					0.11092584241532677
TFKRMKLRLPP	11	Unmodified	_TFKRMKLRLPP_					0	0	0			REV__ENST00000267294.4_1_13:100617617-100617761:-|nuORF	REV__ENST00000267294.4_1_13:100617617-100617761:-|nuORF	MSMS	HCT116MG_D190212_S2	2	462.9519958496094	3	462.951592	1385.83295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.366	1	55.18	54.68	55.68	-0.18649								0	0	0	0.95686	1	21341	21341		1.1098	0.6038	1		+		33335	14681	21038	21153	32090	32090					0.15546228429798248
TFKRRKLRLG	10	Unmodified	_TFKRRKLRLG_					0	0	0			REV__ENSG00000187122|ENST00000266058|SLIT1	REV__ENSG00000187122|ENST00000266058|SLIT1	MSMS	HCT116MG_D190212_S4	4	637.9132080078125	2	637.91203	1273.80951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.306	1	49.947	49.447	50.447	-0.35878								0	0	0	0.95351	1	18686	18686		3.9444	0	1		+		33336	13915	21039	21154	32091	32091					0.1835555070749706
TFLLHIHGLP	10	Unmodified	_TFLLHIHGLP_					0	0	0		ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	MSMS	HCT116MG_D190212_S4	4	383.2270812988281	3	383.225598	1146.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.071	1	41.695	41.195	42.195	-0.37584								0	0	0	0.96183	1	15449	15449		2.086	0.17963	1				33337	1634	21040	21155	32092	32092					0.0875030150227758
TFLNIFRRKK	10	Unmodified	_TFLNIFRRKK_					0	0	0		nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;GRM1|p.P1015Lfs*16|1|0.39|ENSG00000152822|chr6:146434251-146434251|C/-|frameshift_variant;ENSG00000152822|ENST00000282753|GRM1	nc|ENSG00000152822|Q13255-2|GRM1	nc|ENSG00000152822|Q13255-2|GRM1	MSMS	HCT116MG_D190212_S3	3	661.9093627929688	2	661.906414	1321.79827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.873	1	52.566	52.066	53.066	-0.30639								0	0	0	0.94107	1	19998	19998		6.7232	0.99131	1				33338	4165	21041	21156	32093	32093					0.15024728613320804
TFLQHLIRKI	10	Unmodified	_TFLQHLIRKI_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MSMS	HCT116MG_D190212_S3	3	634.899169921875	2	634.895515	1267.77648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.69	1	53.391	52.891	53.891	-0.29946								0	0	0	0.96263	1	20326	20326		3.9444	2.2918	1		+		33339	13914	21042	21157	32094	32094					0.15329923864783268
TFLQRKNDP	9	Unmodified	_TFLQRKNDP_					0	0	0		ENSG00000077943|ENST00000378076|ITGA8	ENSG00000077943|ENST00000378076|ITGA8	ENSG00000077943|ENST00000378076|ITGA8	MULTI-MSMS	HCT116MG_D190212_S2	2	373.5364074707031	3	373.536612	1117.58801	-0.37427	-0.0001398	0.58363	0.00021801	0.20937	7.8206E-05	373.5367768268075	18.289	0.67913	17.926	17.434	18.113	-0.36271					21	12	3	0	0	0	0.70732	1	6209	6209		2.7352	0	1	13896000			33340	1355	21043	21158	32095	32095					0.03391646220529765
TFLTLHQII	9	Unmodified	_TFLTLHQII_					0	0	0		ENSG00000188283|ENST00000684119|ZNF383	ENSG00000188283|ENST00000684119|ZNF383	ENSG00000188283|ENST00000684119|ZNF383	MULTI-SECPEP	HCT116MG_D190212_S1	1	542.7616577148438	2	543.321317	1084.62808	0.32276	0.00017536	-2.8495	-0.0015482	-2.5268	-0.0013729	543.3200734509239	50.859	0.15459	50.859	50.781	50.936	0					4	2	2	0	0	0	0.20889	1	19391	19391		18.146	0	1	6635700			33341	5976	21044	21159	32096	32096					0.08915192891095103
TFNAESNGSY	10	Unmodified	_TFNAESNGSY_					0	0	0		CON__P12763	CON__P12763	CON__P12763	MULTI-MSMS	HCT116MG_D190212_S3	3	545.2272338867188	2	545.22781	1088.44107	0.31688	0.00017277	-0.8699	-0.00047429	-0.55302	-0.00030152	545.2272243150776	36.642	0.2084	36.341	36.197	36.405	-0.30113					5	3	2	0	0	0	0.56527	1	13564	13564		30.637	11.38	1	3929100		+	33342	561	21045	21160	32097	32097					-0.09961495455058866
TFNKRIRRKKI	11	Unmodified	_TFNKRIRRKKI_					0	0	0			REV__ENSG00000249961|ENST00000433154|TERB1	REV__ENSG00000249961|ENST00000433154|TERB1	MSMS	HCT116MG_D190212_S1	1	730.4673461914062	2	730.470244	1458.92593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.389	1	49.389	48.889	49.889	0								0	0	0	0.95954	1	18818	18818		1.3295	0.25807	1		+		33343	14376	21046	21161	32098	32098					0.21482869207375188
TFPACHSG	8	Unmodified	_TFPACHSG_					0	0	0			REV__ENST00000512101.5_1_11:67058196-67058343:+|nuORF	REV__ENST00000512101.5_1_11:67058196-67058343:+|nuORF	MSMS	HCT116MG_D190212_S2	2	410.1744689941406	2	410.176338	818.338123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.205	1	29.92	29.42	30.42	-0.28453								0	0	0	0.8837	1	11095	11095		9.3474	0	1		+		33344	16189	21047	21162	32099	32099					-0.07831234656737251
TFPLCMIAV	9	Unmodified	_TFPLCMIAV_					0	0	0			REV__ENSG00000164128|ENST00000296533|NPY1R	REV__ENSG00000164128|ENST00000296533|NPY1R	MULTI-SECPEP	HCT116MG_D190212_S3	3	497.0306091308594	2	497.758649	993.502746	0.50918	0.00025345	-0.71932	-0.00035805	-0.21014	-0.0001046	497.7582263970568	52.925	0.20886	52.619	52.509	52.718	-0.30639					5	3	2	0	0	0	0.25445	1	20020	20020		8.5933	0	1	1447100	+		33345	12981	21048	21163	32100	32100					0.005734414388484765
TFPPKTLKLT	10	Unmodified	_TFPPKTLKLT_					0	0	0		ENST00000298876.8_1_12:27625755-27627731:+|nuORF	ENST00000298876.8_1_12:27625755-27627731:+|nuORF	ENST00000298876.8_1_12:27625755-27627731:+|nuORF	MSMS	HCT116MG_D190212_S3	3	573.740966796875	2	573.350074	1144.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.042	1	45.73	45.23	46.23	-0.31237								0	0	0	0.90892	1	17257	17257		13.906	5.9959	1				33346	6988	21049	21164	32101	32101					0.11904035096654297
TFRALLLHR	9	Unmodified	_TFRALLLHR_					0	0	0		SLC29A4|p.V348M|1|0.38|ENSG00000164638|chr7:5299260-5299260|G/A|missense_variant;nc|ENSG00000164638|Q7RTT9-2|SLC29A4;ENSG00000164638|ENST00000396872|SLC29A4	SLC29A4|p.V348M|1|0.38|ENSG00000164638|chr7:5299260-5299260|G/A|missense_variant	SLC29A4|p.V348M|1|0.38|ENSG00000164638|chr7:5299260-5299260|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	376.2330017089844	3	376.232975	1125.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.488	1	57.313	56.813	57.813	-0.17494								0	0	0	0.76995	1	22198	22198		1.0715	0	1				33347	4710	21050	21165	32102	32102					0.11928525970688497
TFRALLLHR	9	Unmodified	_TFRALLLHR_					0	0	0		SLC29A4|p.V348M|1|0.38|ENSG00000164638|chr7:5299260-5299260|G/A|missense_variant;nc|ENSG00000164638|Q7RTT9-2|SLC29A4;ENSG00000164638|ENST00000396872|SLC29A4	SLC29A4|p.V348M|1|0.38|ENSG00000164638|chr7:5299260-5299260|G/A|missense_variant	SLC29A4|p.V348M|1|0.38|ENSG00000164638|chr7:5299260-5299260|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	376.2331237792969	3	376.232975	1125.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.649	1	57.374	56.874	57.874	-0.27434								0	0	0	0.76995	1	21913	21913		1.0715	0	1				33348	4710	21050	21165	32103	32103					0.11928525970688497
TFRHLYKLNW	10	Unmodified	_TFRHLYKLNW_					0	0	0			REV__ENSG00000146109|ENST00000274849|ABT1	REV__ENSG00000146109|ENST00000274849|ABT1	MSMS	HCT116MG_D190212_S4	4	689.3746337890625	2	689.374946	1376.73534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.445	1	52.105	51.605	52.605	-0.34023								0	0	0	0.95351	1	19551	19551		3.9444	0.3479	1		+		33349	12474	21051	21166	32104	32104					0.06204162825315507
TFRKFLALYL	10	Unmodified	_TFRKFLALYL_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	HCT116MG_D190212_S1	1	636.3819580078125	2	636.379166	1270.74378	0.61637	0.00039224	0.92056	0.00058582	1.5369	0.00097807	636.3796491257201	49.165	1.4448	49.165	48.408	49.853	0					46	27	2	0	0	0	0.87801	1	18533	18533		3.9444	0.66309	1	23681000			33350	2508	21052	21167	32105	32105					0.1192371674194419
TFRKRSKKKIR	11	Unmodified	_TFRKRSKKKIR_					0	0	0			REV__ENST00000376552.6_1_9:82186844-82187042:+|nuORF	REV__ENST00000376552.6_1_9:82186844-82187042:+|nuORF	MSMS	HCT116MG_D190212_S1	1	724.4325561523438	2	724.470244	1446.92593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.537	1	50.537	50.037	51.037	0								0	0	0	0.96003	1	19286	19286		1.0715	0	1		+		33351	15225	21053	21168	32106	32106					0.22034869207368502
TFRMYFQHDWR	11	Unmodified	_TFRMYFQHDWR_					0	0	0			REV__nc|ENSG00000143127|O75578-3|ITGA10	REV__nc|ENSG00000143127|O75578-3|ITGA10	MSMS	HCT116MG_D190212_S4	4	793.8665771484375	2	793.869702	1585.72485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.196	1	56.896	56.396	57.396	-0.3004								0	0	0	0.95636	1	21462	21462		2.9952	1.6657	1		+		33352	12376	21054	21169	32107	32107					-0.04458187891441412
TFRPHYWEWW	10	Unmodified	_TFRPHYWEWW_					0	0	0			REV__CLCNKB|p.Y466Mfs*13|1|0.38|ENSG00000184908|chr1:16051802-16051802|G/-|frameshift_variant	REV__CLCNKB|p.Y466Mfs*13|1|0.38|ENSG00000184908|chr1:16051802-16051802|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	754.3466186523438	2	754.348929	1506.6833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.646	1	63.523	63.023	64.023	-0.12264								0	0	0	0.96377	1	24668	24668		1.6526	0.32309	1		+		33353	10201	21055	21170	32108	32108					-0.04977000588451119
TFRPHYWEWW	10	Unmodified	_TFRPHYWEWW_					0	0	0			REV__CLCNKB|p.Y466Mfs*13|1|0.38|ENSG00000184908|chr1:16051802-16051802|G/-|frameshift_variant	REV__CLCNKB|p.Y466Mfs*13|1|0.38|ENSG00000184908|chr1:16051802-16051802|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	754.34619140625	2	754.348929	1506.6833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.512	1	63.273	62.773	63.773	-0.2389								0	0	0	0.96937	1	23947	23947		0.40072	0.050084	1		+		33354	10201	21055	21170	32109	32109					-0.04977000588451119
TFRVKFLLW	9	Unmodified	_TFRVKFLLW_					0	0	0		NALCN|p.R1495W|1|0.4|ENSG00000102452|chr13:101065525-101065525|G/A|missense_variant	NALCN|p.R1495W|1|0.4|ENSG00000102452|chr13:101065525-101065525|G/A|missense_variant	NALCN|p.R1495W|1|0.4|ENSG00000102452|chr13:101065525-101065525|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	605.3616333007812	2	605.360776	1208.707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.695	1	51.695	51.195	52.195	0								0	0	0	0.7689	1	19757	19757		4.756	0.81161	1				33355	9359	21056	21171	32110	32110					0.11099464916037505
TFSGGPAG	8	Unmodified	_TFSGGPAG_					0	0	0			REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	693.3202514648438	1	693.320231	692.312954	0.60165	0.00041713	-0.11309	-7.8408E-05	0.48856	0.00033873	693.3199482251541	17.27	0.83251	17.354	16.86	17.693	0.084467					22	15	2	0	0	0	0.60268	1	5758	5758		32.117	0	1	5035300	+		33356	14900	21057	21172	32111	32111					-0.045509661876621976
TFSGGPAGA	9	Unmodified	_TFSGGPAGA_					0	0	0			REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	764.3568115234375	1	764.357345	763.350068	0.92026	0.00070341	-0.30507	-0.00023318	0.61519	0.00047022	764.356750020067	19.959	0.51902	19.584	19.403	19.922	-0.37503					14	9	2	0	0	0	0.13706	1	6965	6965		50.855	14.811	1	5417500	+		33357	14900	21058	21173	32112	32112					-0.04107294641914905
TFSGGPAGA	9	Unmodified	_TFSGGPAGA_					0	0	0			REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	764.3573608398438	1	764.357345	763.350068	0.54795	0.00041883	0.14004	0.00010704	0.688	0.00052588	764.3573197227754	19.626	1.0932	19.686	18.918	20.011	0.05983					34	20	2	0	0	0	0.13706	1	6581	6581		50.855	12.881	1	8721300	+		33358	14900	21058	21173	32113	32113					-0.04107294641914905
TFSGGPAGA	9	Unmodified	_TFSGGPAGA_					0	0	0			REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	764.357666015625	1	764.357345	763.350068	0.85302	0.00065201	-0.071254	-5.4464E-05	0.78176	0.00059755	764.3572054977232	19.773	1.2379	19.579	18.758	19.996	-0.19368					31	23	2	0	0	0	0.13706	1	6763	6763		50.855	4.8341	1	5750500	+		33359	14900	21058	21173	32114	32114					-0.04107294641914905
TFSGGPAGA	9	Unmodified	_TFSGGPAGA_					0	0	0			REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	764.357345	763.350068	0.92026	0.00070341	-0.30507	-0.00023318	0.61519	0.00047022	764.356750020067	19.959	0.51902	19.584	19.403	19.922	-0.37503	-0.032387	-0.00021164	NaN	50.855	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5417500	+		33360	14900	21058	21173							-0.04107294641914905
TFSGGPAGA	9	Unmodified	_TFSGGPAGA_					0	0	0			REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	REV__ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	764.357345	763.350068	0.54795	0.00041883	0.14004	0.00010704	0.688	0.00052588	764.3573197227754	19.626	1.0932	19.686	18.918	20.011	0.05983	0.069443	0.00012859	NaN	50.855	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8721300	+		33361	14900	21058	21173							-0.04107294641914905
TFSLQRAIY	9	Unmodified	_TFSLQRAIY_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MSMS	HCT116MG_D190212_S4	4	366.8692321777344	3	366.869591	1097.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.058	1	33.674	33.174	34.174	-0.38426								0	0	0	0.76699	1	12421	12421		11.495	5.3029	1		+		33362	12271	21059	21174	32115	32115					0.04205431851596586
TFTLDMTP	8	Unmodified	_TFTLDMTP_					0	0	0			REV__CNTN2|p.D535N|1|0.12|ENSG00000184144|chr1:205065170-205065170|G/A|missense_variant	REV__CNTN2|p.D535N|1|0.12|ENSG00000184144|chr1:205065170-205065170|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	463.21905517578125	2	463.220411	924.426269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.54	1	31.269	30.769	31.769	-0.27028								0	0	0	0.87079	1	11526	11526		16.942	5.8278	1		+		33363	10217	21060	21175	32116	32116					-0.03896658856785962
TFTTFKVKK	9	Unmodified	_TFTTFKVKK_					0	0	0			REV__ENSG00000181234|ENST00000435159|TMEM132C	REV__ENSG00000181234|ENST00000435159|TMEM132C	MSMS	HCT116MG_D190212_S4	4	550.3306884765625	2	550.329142	1098.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.966	1	51.621	51.121	52.121	-0.34538								0	0	0	0.76694	1	19357	19357		11.64	4.3511	1		+		33364	13683	21061	21176	32117	32117					0.09835479408138781
TFTVSEDVP	9	Unmodified	_TFTVSEDVP_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.P3228Lfs*42|1|0.27|ENSG00000083857|chr4:186611556-186611556|G/-|frameshift_variant;FAT1|p.G2934Vfs*3|2|0.37|ENSG00000083857|chr4:186617787-186617787|T/-|frameshift_variant;FAT1|p.Q2933Hfs*14|1|0.33|ENSG00000083857|chr4:186617787-186617788|-/G|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	497.7398986816406	2	497.740022	993.465492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.96	1	51.65	51.15	52.15	-0.30927								0	0	0	0.71969	1	19631	19631		18.135	2.3668	1				33365	1439	21062	21177	32118	32118					-0.03150235301563953
TFVAKVSS	8	Unmodified	_TFVAKVSS_					0	0	0			REV__LTR7Y_dup128|chrX:4540474-4540914:-|2.433378595797467|0.000861881152375|11.46|443.0|25|2|anti-sense	REV__LTR7Y_dup128|chrX:4540474-4540914:-|2.433378595797467|0.000861881152375|11.46|443.0|25|2|anti-sense	MSMS	HCT116MG_D190212_S4	4	419.73614501953125	2	419.737086	837.459619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.194	1	47.827	47.327	48.327	-0.36728								0	0	0	0.8837	1	17841	17841		2.0598	0	1		+		33366	16994	21063	21178	32119	32119					0.03438710977422943
TFVRLQVNIPL	11	Unmodified	_TFVRLQVNIPL_					0	0	0			REV__ZP4|p.Q299_V300insLR|1|0.06|ENSG00000116996|chr1:237885829-237885830|-/CTAAGT|inframe_insertion	REV__ZP4|p.Q299_V300insLR|1|0.06|ENSG00000116996|chr1:237885829-237885830|-/CTAAGT|inframe_insertion	MSMS	HCT116MG_D190212_S3	3	650.3956909179688	2	650.392805	1298.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.771	1	46.457	45.957	46.957	-0.31405								0	0	0	0.95636	1	17546	17546		2.9952	0.26005	1		+		33367	18093	21064	21179	32120	32120					0.13362200282335834
TFWLFWDL	8	Unmodified	_TFWLFWDL_					0	0	0		ENST00000557320.5_1_14:96999700-97000015:+|nuORF	ENST00000557320.5_1_14:96999700-97000015:+|nuORF	ENST00000557320.5_1_14:96999700-97000015:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	564.2288208007812	2	564.28166	1126.54877	0.43065	0.00024301	-0.75348	-0.00042517	-0.32283	-0.00018217	564.28123213915	52.613	0.20507	52.613	52.485	52.69	0					6	3	2	0	0	0	0.31507	1	20093	20093		2.3027	0	1	9995600			33368	8793	21065	21180	32121	32121					-0.00944454063073863
TFWYWNYNYY	10	Unmodified	_TFWYWNYNYY_					0	0	0		nc|ENSG00000106392|Q9NS00-2|C1GALT1;ENSG00000106392|ENST00000436587|C1GALT1	nc|ENSG00000106392|Q9NS00-2|C1GALT1	nc|ENSG00000106392|Q9NS00-2|C1GALT1	MSMS	HCT116MG_D190212_S4	4	760.322509765625	2	760.319502	1518.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.921	1	41.544	41.044	42.044	-0.37637								0	0	0	0.94107	1	15388	15388		6.7232	0.51738	1				33369	2073	21066	21181	32122	32122					-0.11411521673403513
TFYAIKERFSQ	11	Unmodified	_TFYAIKERFSQ_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-7|WWC2	REV__nc|ENSG00000151718|Q6AWC2-7|WWC2	MSMS	HCT116MG_D190212_S1	1	695.3619384765625	2	695.361702	1388.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.178	1	56.178	55.678	56.678	0								0	0	0	0.94755	1	21591	21591		7.609	0.88579	1		+		33370	12609	21067	21182	32123	32123					0.030044291433114267
TFYLLRHNLRL	11	Unmodified	_TFYLLRHNLRL_					0	0	0			REV__ENST00000426654.6_1_16:69727998-69728070:+|nuORF	REV__ENST00000426654.6_1_16:69727998-69728070:+|nuORF	MSMS	HCT116MG_D190212_S1	1	723.4244995117188	2	723.422428	1444.8303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.804	1	52.804	52.304	53.304	0								0	0	0	0.95581	1	20206	20206		3.2813	0	1		+		33371	15558	21068	21183	32124	32124					0.1256809629651343
TFYTTSLQEK	10	Unmodified	_TFYTTSLQEK_					0	0	0			REV__PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant	REV__PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	609.30908203125	2	609.306061	1216.59757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.346	1	39.044	38.544	39.544	-0.30137								0	0	0	0.94107	1	14603	14603		6.7232	0.09279	1		+		33372	13885	21069	21184	32125	32125					-0.0020663028460603527
TGDGEYGA	8	Unmodified	_TGDGEYGA_					0	0	0			REV__STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant	REV__STAB2|p.P2450Lfs*4|1|0.51|ENSG00000136011|chr12:103761396-103761396|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	385.1529846191406	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.605	1	4.3404	3.8404	4.8404	-0.26456								0	0	0	0.8837	1	1405	1405		0.79363	0	1		+		33373	12115	21070	21185	32126	32126					-0.1008018163813631
TGDMNITAGVP	11	Unmodified	_TGDMNITAGVP_					0	0	0			REV__SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant	REV__SLC1A1|p.Q413Rfs*5|1|0.28|ENSG00000106688|chr9:4583078-4583078|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	538.25830078125	2	538.258056	1074.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.326	1	23.078	22.578	23.578	-0.24775								0	0	0	0.93717	1	8161	8161		13.042	2.2185	1		+		33374	11307	21071	21186	32127	32127					-0.032711013963762525
TGDQALSLSV	10	Unmodified	_TGDQALSLSV_					0	0	0			REV__ENST00000416406.1_1_22:39135119-39144871:+|nuORF	REV__ENST00000416406.1_1_22:39135119-39144871:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	990.5103759765625	1	990.510216	989.50294	0.91332	0.00090466	-1.1328	-0.001122	-0.21946	-0.00021738	990.5093497901353	41.747	0.31181	41.679	41.549	41.861	-0.068199					7	5	2	0	0	0	0.057153	1	15816	15816		82.529	26.352	1	13036000	+		33375	15478	21072	21187	32128	32128					0.007768559640453532
TGEAPNRYSA	10	Unmodified	_TGEAPNRYSA_					0	0	0			REV__CASP8|p.V410A|1|0.47|ENSG00000064012|chr2:201285242-201285242|T/C|missense_variant	REV__CASP8|p.V410A|1|0.47|ENSG00000064012|chr2:201285242-201285242|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	533.25244140625	2	533.25162	1064.48869	0.51379	0.00027398	-0.53067	-0.00028298	-0.016885	-9.0039E-06	533.2511316890689	24.763	0.52049	24.679	24.393	24.913	-0.083694					15	9	2	0	0	0	0.48137	1	8785	8785		36.506	4.2007	1	4970000	+		33376	10095	21073	21188	32129	32129					-0.04097796464247949
TGEAPNRYSA	10	Unmodified	_TGEAPNRYSA_					0	0	0			REV__CASP8|p.V410A|1|0.47|ENSG00000064012|chr2:201285242-201285242|T/C|missense_variant	REV__CASP8|p.V410A|1|0.47|ENSG00000064012|chr2:201285242-201285242|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	533.7533569335938	2	533.25162	1064.48869	0.61288	0.00032682	-0.34247	-0.00018262	0.2704	0.00014419	533.2514172542135	24.844	0.4154	24.575	24.341	24.757	-0.26881					17	7	3	0	0	0	0.76143	1	8762	8762		15.248	0.41021	1	6585100	+		33377	10095	21073	21188	32130	32130					-0.04097796464247949
TGEFEKKY	8	Unmodified	_TGEFEKKY_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000464211.6_1_12:131357386-131359105:+|nuORF;ENST00000537745.5_1_12:131357386-131357560:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-SECPEP	HCT116MG_D190212_S2	2	501.3028259277344	2	501.250557	1000.48656	0.43763	0.00021936	-0.0097274	-4.8758E-06	0.4279	0.00021448	501.2503979621404	28.281	0.2594	27.952	27.822	28.081	-0.32987					10	4	3	0	0	0	0.31507	1	10347	10347		14.582	5.9884	1	28991000			33378	3179	21074	21189	32131	32131					-0.013662252020480992
TGELSEPRLVH	11	Unmodified	_TGELSEPRLVH_					0	0	0			REV__nc|ENSG00000150627|Q8IZU2|WDR17	REV__nc|ENSG00000150627|Q8IZU2|WDR17	MSMS	HCT116MG_D190212_S2	2	618.9650268554688	2	619.330402	1236.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.71	1	29.409	28.909	29.909	-0.30095								0	0	0	0.9387	1	10894	10894		12.241	3.4953	1		+		33379	17161	21075	21190	32132	32132					0.037392830751286965
TGEPGPSGL	9	Unmodified	_TGEPGPSGL_					0	0	0		COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	814.395263671875	1	814.394124	813.386848	0.89196	0.00072641	0.33824	0.00027546	1.2302	0.0010019	814.3941428561482	28.08	0.57371	27.891	27.673	28.246	-0.18847					14	10	2	0	0	0	0.020181	1	10185	10185		96.285	10.928	1	3024500			33380	527	21076	21191	32133	32133					-0.027310428159921685
TGEPGPSGL	9	Unmodified	_TGEPGPSGL_					0	0	0		COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	COL5A1|p.P1388Lfs*100|1|0.55|ENSG00000130635|chr9:134817061-134817061|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	814.3943481445312	1	814.394124	813.386848	0.8592	0.00069973	0.056801	4.6258E-05	0.916	0.00074599	814.3942357142506	28.265	0.52035	27.934	27.648	28.168	-0.33138					13	9	2	0	0	0	0.023938	1	10144	10144		92.491	25.148	1	3088700			33381	527	21076	21191	32134	32134					-0.027310428159921685
TGEPQPRQA	9	Unmodified	_TGEPQPRQA_					0	0	0			REV__ENST00000306799.7_1_4:142054292-142054571:-|nuORF	REV__ENST00000306799.7_1_4:142054292-142054571:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2488098144531	2	492.24888	982.483208	0.22411	0.00011032	0.25236	0.00012422	0.47647	0.00023454	492.2489700863817	16.164	0.78252	15.83	15.637	16.42	-0.33451					34	14	4	0	0	0	0.069315	1	5402	5402		65.235	9.058	1	18556000	+		33382	14813	21077	21192	32135	32135					-0.008734752560485504
TGEPQPRQA	9	Unmodified	_TGEPQPRQA_					0	0	0			REV__ENST00000306799.7_1_4:142054292-142054571:-|nuORF	REV__ENST00000306799.7_1_4:142054292-142054571:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	492.722900390625	2	492.24888	982.483208	0.22411	0.00011032	0.25236	0.00012422	0.47647	0.00023454	492.2489700863817	16.164	0.78252	15.83	15.637	16.42	-0.33451					34	14	4	0	0	0	0.12947	1	5439	5439		47.749	28.492	1	18556000	+		33383	14813	21077	21192	32136	32136					-0.008734752560485504
TGEPQPRQA	9	Unmodified	_TGEPQPRQA_					0	0	0			REV__ENST00000306799.7_1_4:142054292-142054571:-|nuORF	REV__ENST00000306799.7_1_4:142054292-142054571:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	492.24888	982.483208	0.3283	0.0001616	0.036978	1.8203E-05	0.36527	0.00017981	492.24891876481473	15.903	0.46884	15.903	15.744	16.213	0	0.036674	-0.00017291	NaN	65.235	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2239000	+		33384	14813	21077	21192							-0.008734752560485504
TGESPTPVTA	10	Unmodified	_TGESPTPVTA_					0	0	0			REV__ENSG00000277258|ENST00000620225|PCGF2	REV__ENSG00000277258|ENST00000620225|PCGF2	MULTI-MSMS	HCT116MG_D190212_S2	2	959.4695434570312	1	959.468017	958.460741	0.89733	0.00086096	-0.0051241	-4.9164E-06	0.8922	0.00085604	959.4675469813702	27.388	0.31007	27.042	26.825	27.136	-0.34547					8	5	2	0	0	0	0.033024	1	9948	9948		99.799	21.65	1	10758000	+		33385	14462	21078	21193	32137	32137					-0.020151194443201348
TGESPTPVTA	10	Unmodified	_TGESPTPVTA_					0	0	0			REV__ENSG00000277258|ENST00000620225|PCGF2	REV__ENSG00000277258|ENST00000620225|PCGF2	MULTI-MSMS	HCT116MG_D190212_S3	3	959.4684448242188	1	959.468017	958.460741	0.76915	0.00073797	-0.10197	-9.7835E-05	0.66718	0.00064014	959.4678637053058	27.315	0.36431	27.146	26.964	27.328	-0.16933					10	6	2	0	0	0	0.033024	1	9840	9840		99.799	28.665	1	7563500	+		33386	14462	21078	21193	32138	32138					-0.020151194443201348
TGESPTPVTA	10	Unmodified	_TGESPTPVTA_					0	0	0			REV__ENSG00000277258|ENST00000620225|PCGF2	REV__ENSG00000277258|ENST00000620225|PCGF2	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	959.468017	958.460741	0.89733	0.00086096	-0.0051241	-4.9164E-06	0.8922	0.00085604	959.4675469813702	27.388	0.31007	27.042	26.825	27.136	-0.34547	-0.051895	7.6861E-05	NaN	99.799	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10758000	+		33387	14462	21078	21193							-0.020151194443201348
TGESPTPVTA	10	Unmodified	_TGESPTPVTA_					0	0	0			REV__ENSG00000277258|ENST00000620225|PCGF2	REV__ENSG00000277258|ENST00000620225|PCGF2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	959.468017	958.460741	0.76915	0.00073797	-0.10197	-9.7835E-05	0.66718	0.00064014	959.4678637053058	27.315	0.36431	27.146	26.964	27.328	-0.16933	0.051895	-1.6058E-05	NaN	99.799	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7563500	+		33388	14462	21078	21193							-0.020151194443201348
TGFPGSAG	8	Unmodified	_TGFPGSAG_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	693.3201293945312	1	693.320231	692.312954	0.92781	0.00064327	-0.51042	-0.00035388	0.41739	0.00028938	693.3197595166149	26.994	1.2504	26.825	25.765	27.016	-0.16933					30	23	2	0	0	0	0.28659	1	9659	9659		60.39	10.721	1	4030500			33389	528	21079	21194	32139	32139					-0.045509661876621976
TGFPGSAG	8	Unmodified	_TGFPGSAG_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	693.3209838867188	1	693.320231	692.312954	0.7649	0.00053032	0.036014	2.4969E-05	0.80091	0.00055529	693.3200030679265	27.132	0.62337	26.821	26.379	27.002	-0.3114					16	11	2	0	0	0	0.3916	1	9702	9702		50.855	3.9342	1	4053500			33390	528	21079	21194	32140	32140					-0.045509661876621976
TGGLAEAEP	9	Unmodified	_TGGLAEAEP_					0	0	0			REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	MULTI-MSMS	HCT116MG_D190212_S2	2	844.4063720703125	1	844.404689	843.397412	0.54151	0.00045726	0.62874	0.00053091	1.1703	0.00098817	844.4051404048139	30.697	0.51506	30.43	30.097	30.612	-0.26704					15	9	2	0	0	0	0.084109	2	11306	11306;11324		61.357	3.8861	1	16159000	+		33391	9976	21080	21195	32141;32142	32141					-0.030550601615800588
TGGLAEAEP	9	Unmodified	_TGGLAEAEP_					0	0	0			REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	MULTI-MSMS	HCT116MG_D190212_S3	3	844.4060668945312	1	844.404689	843.397412	0.64559	0.00054514	0.41222	0.00034808	1.0578	0.00089322	844.4049604296206	30.808	0.60238	30.547	30.263	30.865	-0.26071					16	13	2	0	0	0	0.084109	1	11171	11171		61.357	0.96792	1	4953300	+		33392	9976	21080	21195	32143	32143					-0.030550601615800588
TGGLAEAEP	9	Unmodified	_TGGLAEAEP_					0	0	0			REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	844.404689	843.397412	0.54151	0.00045726	0.62874	0.00053091	1.1703	0.00098817	844.4051404048139	30.697	0.51506	30.43	30.097	30.612	-0.26704	-0.058665	0.00010075	NaN	61.357	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16159000	+		33393	9976	21080	21195							-0.030550601615800588
TGGLAEAEP	9	Unmodified	_TGGLAEAEP_					0	0	0			REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	844.404689	843.397412	0.64559	0.00054514	0.41222	0.00034808	1.0578	0.00089322	844.4049604296206	30.808	0.60238	30.547	30.263	30.865	-0.26071	0.058665	-8.2081E-05	NaN	61.357	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4953300	+		33394	9976	21080	21195							-0.030550601615800588
TGHGNAEFY	9	Unmodified	_TGHGNAEFY_					0	0	0			REV__ENSG00000013375|ENST00000513973|PGM3	REV__ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	HCT116MG_D190212_S2	2	498.2150573730469	2	498.214506	994.414459	0.48348	0.00024088	0.13937	6.9435E-05	0.62284	0.00031031	498.2145438810443	31.246	0.25738	30.979	30.819	31.077	-0.26704					7	4	2	0	0	0	0.30117	1	11533	11533		30.637	5.2372	1	11775000	+		33395	10534	21081	21196	32144	32144					-0.08297139555759259
TGHSFWEIYK	10	Unmodified	_TGHSFWEIYK_					0	0	0		ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.K2811Sfs*46|1|0.34|ENSG00000149311|chr11:108345750-108345750|A/-|frameshift_variant;ATM|p.G2425Vfs*15|1|0.33|ENSG00000149311|chr11:108329204-108329204|G/-|frameshift_variant;ATM|p.K2413Tfs*11|1|0.06|ENSG00000149311|chr11:108329168-108329169|-/CAACCAATTTAAATTAT|frameshift_variant;ATM|p.K2303Rfs*7|2|0.24|ENSG00000149311|chr11:108326153-108326153|A/-|frameshift_variant;ATM|p.L2231Wfs*4|1|0.52|ENSG00000149311|chr11:108325426-108325426|T/-|frameshift_variant;ATM|p.C1838Vfs*8|1|0.42|ENSG00000149311|chr11:108304687-108304687|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	ATM|p.R1973Efs*17|1|0.26|ENSG00000149311|chr11:108310311-108310311|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	634.3086547851562	2	634.308938	1266.60332	0.57759	0.00036637	-0.44864	-0.00028457	0.12896	8.1799E-05	634.3087567549231	34.273	0.31141	34.097	33.916	34.227	-0.17512					11	5	3	0	0	0	0.53455	1	12770	12770		32.786	6.765	1	87401000			33396	220	21082	21197	32145	32145					-0.019314869822892433
TGIEAFEL	8	Unmodified	_TGIEAFEL_					0	0	0		ENSG00000164082|ENST00000395052|GRM2	ENSG00000164082|ENST00000395052|GRM2	ENSG00000164082|ENST00000395052|GRM2	MULTI-MSMS	HCT116MG_D190212_S3	3	879.446533203125	1	879.445825	878.438549	0.85389	0.00075095	0.20762	0.00018259	1.0615	0.00093355	879.4460538610701	55.762	0.1605	55.474	55.358	55.518	-0.28773					4	2	2	0	0	0	0.6854	1	21170	21170		24.674	0	1	1605000			33397	4666	21083	21198	32146	32146					-0.005532991220889016
TGIVLVVGLP	10	Unmodified	_TGIVLVVGLP_					0	0	0			REV__ALDH3A1|p.W114R|1|0.09|ENSG00000108602|chr17:19743286-19743286|A/G|missense_variant	REV__ALDH3A1|p.W114R|1|0.09|ENSG00000108602|chr17:19743286-19743286|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	484.3127136230469	2	484.312961	966.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.097	1	35.711	35.211	36.211	-0.38558								0	0	0	0.85468	1	13196	13196		21.747	0	1		+		33398	9914	21084	21199	32147	32147					0.12672692005139652
TGKKQIKKKKK	11	Unmodified	_TGKKQIKKKKK_					0	0	0			REV__ENST00000587928.5_1_19:10781281-10792148:+|nuORF	REV__ENST00000587928.5_1_19:10781281-10792148:+|nuORF	MSMS	HCT116MG_D190212_S1	1	657.9530639648438	2	657.950821	1313.88709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.356	1	51.356	50.856	51.856	0								0	0	0	0.96157	1	19619	19619		0.26902	0.26902	1		+		33399	16665	21085	21200	32148	32148					0.2427014385300481
TGLAPHSPLT	10	Unmodified	_TGLAPHSPLT_					0	0	0			REV__ENSG00000136715|ENST00000643581|SAP130	REV__ENSG00000136715|ENST00000643581|SAP130	MSMS	HCT116MG_D190212_S4	4	497.2699279785156	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.99	1	26.679	26.179	27.179	-0.3114								0	0	0	0.78084	1	9641	9641		31.268	13.122	1		+		33400	12140	21086	21201	32149	32149					0.032531699261767244
TGLRSQSLRE	10	Unmodified	_TGLRSQSLRE_					0	0	0		nc|nan|A6NJI1|C11orf86;ENSG00000173237|ENST00000683896|C11orf86	nc|nan|A6NJI1|C11orf86	nc|nan|A6NJI1|C11orf86	MSMS	HCT116MG_D190212_S1	1	382.8802795410156	3	382.879038	1145.61528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.478	1	14.478	13.978	14.978	0								0	0	0	0.9356	1	4741	4741		7.9454	0	1				33401	5281	21087	21202	32150	32150					0.048301297608986715
TGLVPGRQYE	10	Unmodified	_TGLVPGRQYE_					0	0	0		PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB;ENST00000538174.6_1_12:70979073-71031175:-|nuORF;PTPRB|p.N770Kfs*7|1|0.29|ENSG00000127329|chr12:70571966-70571967|-/T|frameshift_variant	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	560.2933959960938	2	560.293288	1118.57202	0.40419	0.00022646	-0.56125	-0.00031447	-0.15707	-8.8003E-05	560.7942631400309	33.827	0.41562	33.537	33.356	33.771	-0.29013					10	7	2	0	0	0	0.45124	1	12444	12444		38.615	5.8291	1	5881300			33402	2962	21088	21203	32151	32151					0.017479399836247467
TGNVEQYQ	8	Unmodified	_TGNVEQYQ_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-MSMS	HCT116MG_D190212_S1	1	469.714599609375	2	469.714339	937.414125	0.34666	0.00016283	-0.33635	-0.00015799	0.01031	4.8427E-06	469.714190461902	20.29	0.52166	20.29	20.07	20.592	0					15	9	2	0	0	0	0.79834	1	7191	7191		11.64	1.5664	1	2555500	+		33403	12615	21089	21204	32152	32152					-0.05708559275615244
TGNYPAGE	8	Unmodified	_TGNYPAGE_					0	0	0			REV__ENSG00000129696|ENST00000431156|TTI2	REV__ENSG00000129696|ENST00000431156|TTI2	MULTI-MSMS	HCT116MG_D190212_S3	3	808.347900390625	1	808.347174	807.339897	0.87878	0.00071036	-0.22441	-0.0001814	0.65437	0.00052896	808.346901175099	22.223	1.1501	22.224	21.465	22.615	0.00074577					39	21	3	0	0	0	0.71258	1	7612	7612		21.537	4.5947	1	10024000	+		33404	11899	21090	21205	32153	32153					-0.07147902367137249
TGNYPAGE	8	Unmodified	_TGNYPAGE_					0	0	0			REV__ENSG00000129696|ENST00000431156|TTI2	REV__ENSG00000129696|ENST00000431156|TTI2	MULTI-MSMS	HCT116MG_D190212_S4	4	808.3468627929688	1	808.347174	807.339897	0.9102	0.00073575	-0.25062	-0.00020259	0.65957	0.00053317	808.3467749712842	22.256	1.2462	22.028	21.209	22.455	-0.22777					45	23	3	0	0	0	0.75092	1	7523	7523		17.113	2.2746	1	9820800	+		33405	11899	21090	21205	32154	32154					-0.07147902367137249
TGPCCCCC	8	Unmodified	_TGPCCCCC_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	MSMS	HCT116MG_D190212_S1	1	395.0942077636719	2	395.096473	788.178393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.339	1	11.339	10.839	11.839	0								0	0	0	0.8837	1	3560	3560		0	0	1				33406	4656	21091	21206	32155	32155					-0.22416893583761066
TGPCCCCC	8	Unmodified	_TGPCCCCC_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	MSMS	HCT116MG_D190212_S2	2	395.09490966796875	2	395.096473	788.178393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.822	1	10.549	10.049	11.049	-0.27365								0	0	0	0.8837	1	3449	3449		0	0	1				33407	4656	21091	21206	32156	32156					-0.22416893583761066
TGPCCCCC	8	Unmodified	_TGPCCCCC_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	MSMS	HCT116MG_D190212_S2	2	395.0946350097656	2	395.096473	788.178393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.353	1	11.071	10.571	11.571	-0.28186								0	0	0	0.8837	1	3653	3653		0	0	1				33408	4656	21091	21206	32157	32157					-0.22416893583761066
TGPCCCCC	8	Unmodified	_TGPCCCCC_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	MSMS	HCT116MG_D190212_S2	2	395.0950927734375	2	395.096473	788.178393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.965	1	11.676	11.176	12.176	-0.28953								0	0	0	0.8837	1	3887	3887		0	0	1				33409	4656	21091	21206	32158	32158					-0.22416893583761066
TGPGADQPPTG	11	Unmodified	_TGPGADQPPTG_					0	0	0		nc|ENSG00000170558|P19022-2|CDH2;ENSG00000170558|ENST00000269141|CDH2	nc|ENSG00000170558|P19022-2|CDH2	nc|ENSG00000170558|P19022-2|CDH2	MULTI-MSMS	HCT116MG_D190212_S4	4	499.23333740234375	2	499.232896	996.451239	0.44981	0.00022456	-0.70096	-0.00034994	-0.25115	-0.00012538	499.23238614460166	20.58	0.36401	20.378	20.144	20.508	-0.20133					9	6	2	0	0	0	0.48359	1	7045	7045		47.594	0	1	3942000			33410	5139	21092	21207	32159	32159					-0.04712887729863269
TGPSGPSQPPP	11	Unmodified	_TGPSGPSQPPP_					0	0	0			REV__ENSG00000165912|ENST00000298838|PACSIN3	REV__ENSG00000165912|ENST00000298838|PACSIN3	MSMS	HCT116MG_D190212_S3	3	511.2875671386719	2	511.251089	1020.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.806	1	29.57	29.07	30.07	-0.23655								0	0	0	0.93552	1	10841	10841		13.906	0.86358	1		+		33411	13081	21093	21208	32160	32160					-0.021800108331490264
TGPVYRRSK	9	Unmodified	_TGPVYRRSK_					0	0	0			REV__ENST00000359193.3_1_6:27101535-27101784:+|nuORF	REV__ENST00000359193.3_1_6:27101535-27101784:+|nuORF	MSMS	HCT116MG_D190212_S4	4	355.2055969238281	3	355.205085	1062.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.986	1	61.732	61.232	62.232	-0.25457								0	0	0	0.76967	1	23399	23399		1.0715	0.10919	1		+		33412	15070	21094	21209	32161	32161					0.06463369802986563
TGPYDPNNLPG	11	Unmodified	_TGPYDPNNLPG_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	MULTI-MSMS	HCT116MG_D190212_S3	3	572.767578125	2	572.767103	1143.51965	0.39062	0.00022373	-0.10908	-6.2477E-05	0.28154	0.00016126	572.7671784570352	34.935	0.25993	34.638	34.492	34.752	-0.29707					7	4	2	0	0	0	0.71271	1	12920	12920		17.113	1.2657	1	8626300	+		33413	11194	21095	21210	32162	32162					-0.04636643150024611
TGRPRPPP	8	Unmodified	_TGRPRPPP_					0	0	0			REV__ENST00000372441.1_1_6:43477335-43478064:-|nuORF	REV__ENST00000372441.1_1_6:43477335-43478064:-|nuORF	MSMS	HCT116MG_D190212_S4	4	439.25347900390625	2	439.253769	876.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.574	1	38.192	37.692	38.692	-0.38163								0	0	0	0.8837	1	14142	14142		2.8892	0	1		+		33414	15173	21096	21211	32163	32163					0.049797575399907146
TGRRYGPR	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TGRRYGPR_					1	0	0			REV__ENST00000527370.5_1_11:67264560-67264662:-|nuORF	REV__ENST00000527370.5_1_11:67264560-67264662:-|nuORF	MSMS	HCT116MG_D190212_S2	2	502.7728271484375	2	502.772857	1003.53116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.591	1	16.249	15.749	16.749	-0.34183								0	0	0	0.19674	1	5593	5593		68.081	10.609	1		+		33415	16285	21097	21212	32164	32164					0.0295364345465714
TGSGVRQV	8	Unmodified	_TGSGVRQV_					0	0	0			REV__MAP4K5|p.Y31H|1|0.09|ENSG00000012983|chr14:50531959-50531959|A/G|missense_variant	REV__MAP4K5|p.Y31H|1|0.09|ENSG00000012983|chr14:50531959-50531959|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	402.22344970703125	2	402.222134	802.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.134	1	50.955	50.455	51.455	-0.17868								0	0	0	0.8837	1	19611	19611		8.5933	0	1		+		33416	10530	21098	21213	32165	32165					0.02059772032089313
TGTPDEASPAH	11	Unmodified	_TGTPDEASPAH_					0	0	0			REV__nc|ENSG00000230257|Q86UQ8-2|NFE4	REV__nc|ENSG00000230257|Q86UQ8-2|NFE4	MULTI-SECPEP	HCT116MG_D190212_S4	4	541.249267578125	2	541.741085	1081.46762	0.26665	0.00014446	-0.061897	-3.3532E-05	0.20476	0.00011093	541.7408915655994	17.993	0.6235	17.818	17.376	18	-0.17501					18	11	2	0	0	0	0.34807	1	5939	5939		17.113	0	1	2044100	+		33417	17302	21099	21214	32166	32166					-0.06985806563761798
TGVESVYTTF	10	Unmodified	_TGVESVYTTF_					0	0	0		RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant;nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2;ENST00000574515.1_1_17:2894647-2911342:+|nuORF	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	RAP1GAP2|p.F493Sfs*60|2|0.24|ENSG00000132359|chr17:3008122-3008122|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	552.2667846679688	2	552.266404	1102.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.221	1	38.92	38.42	39.42	-0.30137								0	0	0	0.90475	1	14555	14555		14.838	4.0143	1				33418	3181	21100	21215	32167	32167					-0.028902772387709774
TGVGLLKSAGP	11	Unmodified	_TGVGLLKSAGP_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	HCT116MG_D190212_S3	3	500.2955017089844	2	500.295299	998.576045	0.40857	0.00020441	-0.042228	-2.1127E-05	0.36634	0.00018328	500.2953052022864	19.925	0.2606	19.973	19.791	20.051	0.048107					7	4	2	0	0	0	0.69749	1	6873	6873		22.736	0	1	3217700	+		33419	12886	21101	21216	32168	32168					0.07670029477321805
TGVLKSHQRR	10	Unmodified	_TGVLKSHQRR_					0	0	0			REV__nc|ENSG00000214021|Q9Y4R7-5|TTLL3	REV__nc|ENSG00000214021|Q9Y4R7-5|TTLL3	MSMS	HCT116MG_D190212_S1	1	590.8941040039062	2	591.34672	1180.67889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.319	1	58.319	57.819	58.819	0								0	0	0	0.95507	1	22462	22462		3.5965	0	1		+		33420	14261	21102	21217	32169	32169					0.0957753498864804
TGVLRRKRRRP	11	Unmodified	_TGVLRRKRRRP_					0	0	0			REV__ENST00000286827.7_1_21:32711646-32711721:-|nuORF	REV__ENST00000286827.7_1_21:32711646-32711721:-|nuORF	MSMS	HCT116MG_D190212_S3	3	697.9512329101562	2	697.95001	1393.88547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.57	1	48.254	47.754	48.754	-0.31596								0	0	0	0.95954	1	18271	18271		1.3295	0	1		+		33421	14732	21103	21218	32170	32170					0.2042794760761808
THAAPGPG	8	Unmodified	_THAAPGPG_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MSMS	HCT116MG_D190212_S4	4	354.17584228515625	2	354.177195	706.339838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.39	1	35.004	34.504	35.504	-0.38606								0	0	0	0.8837	1	12960	12960		2.5775	1.7838	1		+		33422	12326	21104	21219	32171	32171					-0.02507857576472361
THAIGCQLCD	10	Unmodified	_THAIGCQLCD_					0	0	0		ENST00000430820.1_1_X:134654205-134654552:-|nuORF	ENST00000430820.1_1_X:134654205-134654552:-|nuORF	ENST00000430820.1_1_X:134654205-134654552:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	530.7310791015625	2	530.731151	1059.44775	0.44906	0.00023833	-0.82285	-0.00043671	-0.3738	-0.00019839	530.7309612498068	28.357	0.20885	28.151	28.02	28.229	-0.20593					8	3	3	0	0	0	0.69965	1	10282	10282		20.415	3.3016	1	8517200			33423	7851	21105	21220	32172	32172					-0.0795959709971612
THDKCNLC	8	Unmodified	_THDKCNLC_					0	0	0			REV__LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	REV__LAMA2|p.A2876Pfs*27|1|0.18|ENSG00000196569|chr6:129505272-129505272|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	467.2015380859375	2	467.199487	932.384421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.044	1	26.044	25.544	26.544	0								0	0	0	0.8837	1	9394	9394		14.582	4.3983	1		+		33424	14034	21106	21221	32173	32173					-0.08447537816971362
THDLKNIRF	9	Unmodified	_THDLKNIRF_					0	0	0		ENSG00000083093|ENST00000261584|PALB2;PALB2|p.L1006Ffs*5|1|0.3|ENSG00000083093|chr16:23621457-23621458|-/A|frameshift_variant;PALB2|p.E1010*|1|0.26|ENSG00000083093|chr16:23621448-23621449|-/G|frameshift_variant	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MULTI-SECPEP	HCT116MG_D190212_S2	2	382.2698669433594	3	381.88049	1142.61964	-0.065087	-2.4855E-05	0.69542	0.00026557	0.63033	0.00024071	381.8805885612458	27.058	0.15999	26.705	26.606	26.766	-0.35254					4	2	2	0	0	0	0.26787	1	9811	9811		2.2828	1.0894	1	4063000			33425	1426	21107	21222	32174	32174					0.0540363897446241
THDSADCC	8	Unmodified	_THDSADCC_					0	0	0		ENST00000517951.5_1_5:156822576-156936463:-|nuORF;ADAM19|p.P794Lfs*18|1|0.07|ENSG00000135074|chr5:157488434-157488434|G/-|frameshift_variant;ENSG00000135074|ENST00000257527|ADAM19;nc|ENSG00000135074|Q9H013|ADAM19	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MSMS	HCT116MG_D190212_S2	2	426.13726806640625	2	426.136553	850.258552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.869	1	11.579	11.079	12.079	-0.28953								0	0	0	0.8837	1	3850	3850		0.69038	0	1				33426	36	21108	21223	32175	32175					-0.17256669393054835
THEVFQQQLP	10	Unmodified	_THEVFQQQLP_					0	0	0		ENSG00000140521|ENST00000268124|POLG;POLG|p.H659Qfs*24|1|0.2|ENSG00000140521|chr15:89324199-89324200|AG/-|frameshift_variant	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	MSMS	HCT116MG_D190212_S4	4	613.8103637695312	2	613.811845	1225.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.873	1	31.498	30.998	31.998	-0.37529								0	0	0	0.92607	1	11586	11586		10.074	1.3285	1				33427	3670	21109	21224	32176	32176					0.0053561152938073064
THIAWSRFLCA	11	Unmodified	_THIAWSRFLCA_					0	0	0			REV__ENST00000472045.1_1_5:131822508-131823888:-|nuORF	REV__ENST00000472045.1_1_5:131822508-131823888:-|nuORF	MSMS	HCT116MG_D190212_S3	3	652.83349609375	2	652.832057	1303.64956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.658	1	31.387	30.887	31.887	-0.27028								0	0	0	0.91433	1	11574	11574		18.146	8.7632	1		+		33428	11807	21110	21225	32177	32177					0.009882546481776444
THKTHAMMLY	10	Unmodified	_THKTHAMMLY_					0	0	0		ENSG00000153933|ENST00000284061|DGKE	ENSG00000153933|ENST00000284061|DGKE	ENSG00000153933|ENST00000284061|DGKE	MULTI-MSMS	HCT116MG_D190212_S3	3	616.7998657226562	2	616.799368	1231.58418	0.49128	0.00030302	-0.10499	-6.4755E-05	0.3863	0.00023827	616.7991797601625	37.807	0.39093	37.505	37.39	37.781	-0.30137					63	27	3	0	0	0	0.64004	1	13969	13969		25.399	0	1	133780000			33429	4200	21111	21226	32178	32178					-0.02234482869198473
THLAPYSDELR	11	Unmodified	_THLAPYSDELR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S1	1	434.5546569824219	3	434.554331	1300.64116	0.15966	6.9381E-05	-0.14383	-6.2504E-05	0.015825	6.8767E-06	434.55430631207906	31.303	0.31232	31.303	31.128	31.44	0					10	5	3	0	0	0	0.11146	1	11533	11533		64.688	37.599	1	7172100			33430	2597	21112	21227	32179	32179					0.0028697921250113723
THLAPYSDELR	11	Unmodified	_THLAPYSDELR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	HCT116MG_D190212_S1	1	651.3286743164062	2	651.327859	1300.64116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.336	1	31.336	30.836	31.836	0								0	0	0	3.2593E-07	1	11526	11526		146.48	86.408	1				33431	2597	21112	21227	32180	32180					0.0028697921250113723
THLAPYSDELR	11	Unmodified	_THLAPYSDELR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S2	2	651.3283081054688	2	651.327859	1300.64116	0.86003	0.00056016	0.1607	0.00010467	1.0207	0.00066483	651.8292319997022	31.549	0.20733	31.3	31.147	31.354	-0.24883					5	3	2	0	0	0	0.037919	1	11655	11655		118.21	74.437	1	15534000			33432	2597	21112	21227	32181	32181					0.0028697921250113723
THLAPYSDELR	11	Unmodified	_THLAPYSDELR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	651.3278198242188	2	651.327859	1300.64116	0.58649	0.000382	-0.29936	-0.00019498	0.28714	0.00018702	651.327687249041	31.674	0.36474	31.404	31.221	31.586	-0.27028					14	6	3	0	0	0	0.030786	1	11582	11582		125.66	78.062	1	19249000			33433	2597	21112	21227	32182	32182					0.0028697921250113723
THLAPYSDELR	11	Unmodified	_THLAPYSDELR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	434.5541076660156	3	434.554331	1300.64116	0.11868	5.1572E-05	-0.21562	-9.37E-05	-0.096945	-4.2128E-05	434.5541317052423	31.674	0.2606	31.404	31.273	31.534	-0.27028					10	4	3	0	0	0	0.17741	1	11603	11603		57.477	30.388	1	9610400			33434	2597	21112	21227	32183	32183					0.0028697921250113723
THLAPYSDELR	11	Unmodified	_THLAPYSDELR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S4	4	651.3276977539062	2	651.327859	1300.64116	0.45995	0.00029958	0.26993	0.00017582	0.72989	0.0004754	651.327800950475	31.809	0.25952	31.433	31.278	31.538	-0.37529					11	4	3	0	0	0	2.2815E-06	1	11561	11561		177.58	133.8	1	11251000			33435	2597	21112	21227	32184	32184					0.0028697921250113723
THLAPYSDELR	11	Unmodified	_THLAPYSDELR_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S4	4	434.8885498046875	3	434.554331	1300.64116	0.13614	5.9161E-05	-0.25082	-0.000109	-0.11468	-4.9836E-05	434.55411904480434	31.831	0.36334	31.456	31.226	31.59	-0.37529					14	6	3	0	0	0	0.057688	1	11575	11575		72.276	45.188	1	9766800			33436	2597	21112	21227	32185	32185					0.0028697921250113723
THLGPHLN	8	Unmodified	_THLGPHLN_					0	0	0		ENST00000461294.2_1_4:55143562-55144193:+|nuORF;ENST00000507536.1_1_4:55143544-55147845:+|nuORF;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;PDGFRA|p.N780Tfs*17|1|0.45|ENSG00000134853|chr4:54285382-54285382|A/-|frameshift_variant;ENSG00000134853|ENST00000257290|PDGFRA	ENST00000461294.2_1_4:55143562-55144193:+|nuORF	ENST00000461294.2_1_4:55143562-55144193:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	444.7380676269531	2	444.737951	887.46135	0.19371	8.6151E-05	-0.17983	-7.9979E-05	0.013879	6.1727E-06	444.7378929379294	18.603	0.46793	18.422	18.147	18.615	-0.18052					12	8	2	0	0	0	0.8506	1	6251	6251		5.2307	0	1	4149900			33437	3310	21113	21228	32186	32186					0.013117647860440229
THLTQHESL	9	Unmodified	_THLTQHESL_					0	0	0			REV__ENSG00000179930|ENST00000339948|ZNF648	REV__ENSG00000179930|ENST00000339948|ZNF648	MSMS	HCT116MG_D190212_S1	1	533.27197265625	2	533.269813	1064.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.954	1	24.954	24.454	25.454	0								0	0	0	0.71969	1	8956	8956		18.135	1.1927	1		+		33438	13648	21114	21229	32187	32187					-0.004609195675357114
THLVLLIKLL	10	Unmodified	_THLVLLIKLL_					0	0	0			REV__ENST00000342756.9_1_4:57357643-57361536:+|nuORF	REV__ENST00000342756.9_1_4:57357643-57361536:+|nuORF	MSMS	HCT116MG_D190212_S1	1	388.2694396972656	3	388.268915	1161.78492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.937	1	62.937	62.437	63.437	0								0	0	0	0.97116	1	24312	24312		0	0	1		+		33439	14986	21115	21230	32188	32188					0.2104947778143469
THRRLRRLRYP	11	Unmodified	_THRRLRRLRYP_					0	0	0			REV__nc|ENSG00000168397|Q9Y4P1-2|ATG4B	REV__nc|ENSG00000168397|Q9Y4P1-2|ATG4B	MULTI-MSMS	HCT116MG_D190212_S1	1	762.4614868164062	2	762.460742	1522.90693	0.72211	0.00055058	0.68579	0.00052289	1.4079	0.0010735	762.9626141614083	59.775	0.54975	59.775	59.503	60.052	0					41	21	3	0	0	0	0.74191	2	23006	23006;23134		0	0	1	1382800	+		33440	17205	21116	21231	32189;32190	32189					0.16639332636373183
THRRRRLVQKR	11	Unmodified	_THRRRRLVQKR_					0	0	0		MYOF|p.R1025Q|1|0.22|ENSG00000138119|chr10:93359879-93359879|C/T|missense_variant	MYOF|p.R1025Q|1|0.22|ENSG00000138119|chr10:93359879-93359879|C/T|missense_variant	MYOF|p.R1025Q|1|0.22|ENSG00000138119|chr10:93359879-93359879|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	753.47216796875	2	753.471641	1504.92873	0.7962	0.00059991	0.086038	6.4827E-05	0.88224	0.00066474	753.4716738586642	56.511	0.61958	56.511	56.222	56.841	0					23	11	4	0	0	0	0.74191	1	21670	21670		0.23584	0.23584	1	73384000			33441	9355	21117	21232	32191	32191					0.19646137384916074
THRVERWEED	10	Unmodified	_THRVERWEED_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	MSMS	HCT116MG_D190212_S1	1	452.88116455078125	3	452.881219	1355.62183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7796	1	9.7796	9.2796	10.28	0								0	0	0	0.97054	1	2972	2972		0.13989	0	1		+		33442	12228	21118	21233	32192	32192					-0.04175977078375581
THSAPTTP	8	Unmodified	_THSAPTTP_					0	0	0		ENSG00000159208|ENST00000290363|CIART	ENSG00000159208|ENST00000290363|CIART	ENSG00000159208|ENST00000290363|CIART	MSMS	HCT116MG_D190212_S1	1	406.2004699707031	2	406.200867	810.387182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.809	1	21.809	21.309	22.309	0								0	0	0	0.8837	1	7691	7691		13.508	0	1				33443	4404	21119	21234	32193	32193					-0.025596230961355104
THTWERRI	8	Unmodified	_THTWERRI_					0	0	0			REV__ENST00000541118.1_1_17:63051747-63051834:-|nuORF	REV__ENST00000541118.1_1_17:63051747-63051834:-|nuORF	MSMS	HCT116MG_D190212_S1	1	366.8670959472656	3	366.864952	1097.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.964	1	10.964	10.464	11.464	0								0	0	0	0.8837	1	3409	3409		0.45834	0	1		+		33444	16367	21120	21235	32194	32194					0.028141991431766655
THWITMWAEK	10	Unmodified	_THWITMWAEK_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.L3228*|1|0.22|ENSG00000115464|chr2:61190564-61190564|A/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;USP34|p.L2716Sfs*30|1|0.05|ENSG00000115464|chr2:61214596-61214597|-/AAGCTGA|frameshift_variant	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MSMS	HCT116MG_D190212_S3	3	434.8819580078125	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.767	1	64.566	64.066	65.066	-0.2009								0	0	0	0.96377	1	24612	24612		0.69767	0.24315	1				33445	2470	21121	21236	32195	32195					-0.01606853963062349
TIAEEHTP	8	Unmodified	_TIAEEHTP_					0	0	0			REV__ENSG00000162396|ENST00000371279|PARS2	REV__ENSG00000162396|ENST00000371279|PARS2	MULTI-MSMS	HCT116MG_D190212_S2	2	897.431396484375	1	897.431238	896.423961	1.1863	0.0010646	-0.71878	-0.00064505	0.46749	0.00041954	897.4302926768421	29.137	0.87366	28.821	28.555	29.429	-0.31613					26	16	2	0	0	0	0.69862	1	10754	10754		23.148	1.4018	1	15938000	+		33446	12875	21122	21237	32196	32196					-0.028393712702495577
TIAGEAIDEHQ	11	Unmodified	_TIAGEAIDEHQ_					0	0	0			REV__GRM7|p.E384Kfs*28|1|0.36|ENSG00000196277|chr3:7415132-7415132|A/-|frameshift_variant	REV__GRM7|p.E384Kfs*28|1|0.36|ENSG00000196277|chr3:7415132-7415132|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	592.2833251953125	2	592.283117	1182.55168	0.69899	0.000414	-0.19097	-0.00011311	0.50802	0.00030089	592.2829899424484	30.099	0.53	29.849	29.487	30.017	-0.24946					16	9	2	0	0	0	0.70662	1	10948	10948		19.362	1.9193	1	3482000	+		33447	14015	21123	21238	32197	32197					-0.03229275466856052
TIAVQTPDGGS	11	Unmodified	_TIAVQTPDGGS_					0	0	0		nc|ENSG00000119283|Q6ZTA4-2|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.759521484375	2	523.261653	1044.50875	0.60473	0.00031643	-1.7894	-0.00093631	-1.1846	-0.00061988	523.2606944769806	34.634	0.2576	34.476	34.296	34.554	-0.15834					6	4	2	0	0	0	0.35938	1	12922	12922		16.149	2.2431	1	15402000			33448	9436	21124	21239	32198	32198					-0.011720455242766548
TICTHYKPSPY	11	Unmodified	_TICTHYKPSPY_					0	0	0			REV__ENST00000588933.5_1_19:9529842-9529914:-|nuORF	REV__ENST00000588933.5_1_19:9529842-9529914:-|nuORF	MSMS	HCT116MG_D190212_S3	3	437.21441650390625	3	437.213029	1308.61726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.989	1	61.758	61.258	62.258	-0.23129								0	0	0	0.95581	1	23671	23671		1.3296	0.36737	1		+		33449	16673	21125	21240	32199	32199					-0.024705775455004186
TIDDGIFEV	9	Unmodified	_TIDDGIFEV_					0	0	0		nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L	nc|ENSG00000204389|P0DMV8-2|HSPA1A	nc|ENSG00000204389|P0DMV8-2|HSPA1A	MULTI-MSMS	HCT116MG_D190212_S1	1	1008.4887084960938	1	1008.48842	1007.48114	0.88581	0.00089333	-0.27477	-0.0002771	0.61104	0.00061623	1008.4878535762156	55.58	0.20597	55.58	55.452	55.658	0					5	3	2	0	0	0	0.12994	1	21373	21373		52.268	25.385	1	40190000			33450	6330	21126	21241	32200	32200					-0.02229948784508906
TIDDGIFEV	9	Unmodified	_TIDDGIFEV_					0	0	0		nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L	nc|ENSG00000204389|P0DMV8-2|HSPA1A	nc|ENSG00000204389|P0DMV8-2|HSPA1A	MULTI-MSMS	HCT116MG_D190212_S2	2	1008.4889526367188	1	1008.48842	1007.48114	0.67181	0.00067751	0.12052	0.00012154	0.79233	0.00079905	1008.4883203005058	55.799	0.25907	55.613	55.483	55.742	-0.18565					10	4	3	0	0	0	0.027492	1	21518	21518		88.904	36.635	1	168340000			33451	6330	21126	21241	32201	32201					-0.02229948784508906
TIDDGIFEV	9	Unmodified	_TIDDGIFEV_					0	0	0		nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204390|ENST00000375654|HSPA1L	nc|ENSG00000204389|P0DMV8-2|HSPA1A	nc|ENSG00000204389|P0DMV8-2|HSPA1A	MULTI-MSMS	HCT116MG_D190212_S3	3	1008.4889526367188	1	1008.48842	1007.48114	0.6797	0.00068546	0.13014	0.00013125	0.80984	0.00081671	1008.4883108849017	55.915	0.41909	55.627	55.465	55.884	-0.28774					13	7	3	0	0	0	0.027492	1	21227	21227		88.904	42.883	1	13018000			33452	6330	21126	21241	32202	32202					-0.02229948784508906
TIDDPTKQTKF	11	Unmodified	_TIDDPTKQTKF_					0	0	0		SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant;SNX18|p.A416Pfs*42|2|0.34|ENSG00000178996|chr5:54519192-54519192|C/-|frameshift_variant;nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant	SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	647.338134765625	2	647.337892	1292.66123	0.8913	0.00057697	-0.17176	-0.00011119	0.71954	0.00046578	647.337627776467	29.272	0.26098	29.272	29.112	29.373	0					7	4	2	0	0	0	0.45831	1	10718	10718		59.013	43.764	1	5351500			33453	5528	21127	21242	32203	32203					0.02660730152456381
TIDDPTKQTKF	11	Unmodified	_TIDDPTKQTKF_					0	0	0		SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant;SNX18|p.A416Pfs*42|2|0.34|ENSG00000178996|chr5:54519192-54519192|C/-|frameshift_variant;nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant	SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	647.3391723632812	2	647.337892	1292.66123	0.98404	0.00063701	0.28919	0.00018721	1.2732	0.00082421	647.3379920234279	29.554	0.36165	29.253	29.031	29.392	-0.30095					14	6	3	0	0	0	0.01267	1	10843	10843		157.24	107.72	1	26034000			33454	5528	21127	21242	32204	32204					0.02660730152456381
TIDDPTKQTKF	11	Unmodified	_TIDDPTKQTKF_					0	0	0		SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant;SNX18|p.A416Pfs*42|2|0.34|ENSG00000178996|chr5:54519192-54519192|C/-|frameshift_variant;nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant	SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	431.89410400390625	3	431.894354	1292.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.66	1	29.36	28.86	29.86	-0.30095								0	0	0	0.66316	1	10874	10874		40.317	34.449	1				33455	5528	21127	21242	32205	32205					0.02660730152456381
TIDDPTKQTKF	11	Unmodified	_TIDDPTKQTKF_					0	0	0		SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant;SNX18|p.A416Pfs*42|2|0.34|ENSG00000178996|chr5:54519192-54519192|C/-|frameshift_variant;nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant	SNX18|p.A416Rfs*5|2|0.46|ENSG00000178996|chr5:54519191-54519192|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	647.337890625	2	647.337892	1292.66123	0.74348	0.00048128	0.044723	2.8951E-05	0.7882	0.00051023	647.3376492114971	29.658	0.313	29.421	29.187	29.5	-0.23655					12	5	3	0	0	0	0.2752	1	10796	10796		78.61	59.249	1	6104300			33456	5528	21127	21242	32206	32206					0.02660730152456381
TIDELQKI	8	Unmodified	_TIDELQKI_					0	0	0		tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	480.2738952636719	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.835	1	38.835	38.335	39.335	0								0	0	0	0.14782	1	14551	14551		74.929	0	1				33457	18469	21128	21243	32207	32207					0.05258634349092972
TIDELQKI	8	Unmodified	_TIDELQKI_					0	0	0		tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2746276855469	2	480.274032	958.533512	0.10828	5.2006E-05	0.22706	0.00010905	0.33535	0.00016106	480.27408135847077	38.766	0.36544	38.681	38.492	38.857	-0.084621					12	6	3	0	0	0	0.005031	1	14578	14578		171.47	0	1	52838000			33458	18469	21128	21243	32208	32208					0.05258634349092972
TIDELQKI	8	Unmodified	_TIDELQKI_					0	0	0		tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	480.2738952636719	2	480.274032	958.533512	0.16475	7.9125E-05	0.22507	0.00010809	0.38982	0.00018722	480.2739522272284	38.991	0.41576	38.69	38.404	38.82	-0.30137					12	7	3	0	0	0	0.045718	1	14478	14478		128.37	0	1	12401000			33459	18469	21128	21243	32209	32209					0.05258634349092972
TIDELQKI	8	Unmodified	_TIDELQKI_					0	0	0		tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	tr|U7SUA5|U7SUA5_FUSNUOligopeptidaseFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01160PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	480.2737731933594	2	480.274032	958.533512	0.29548	0.00014191	-0.61186	-0.00029386	-0.31638	-0.00015195	480.2735822609174	39.127	0.27517	38.747	38.54	38.815	-0.38055					8	5	2	0	0	0	0.094591	1	14363	14363		96.285	0	1	3095200			33460	18469	21128	21243	32210	32210					0.05258634349092972
TIDESGSIL	9	Unmodified	_TIDESGSIL_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	934.4730224609375	1	934.472768	933.465492	0.85845	0.0008022	1.1898	0.0011119	2.0483	0.0019141	934.4723043286909	43.866	0.46234	43.788	43.607	44.069	-0.078373					12	8	2	0	0	0	0.019399	1	16655	16655		97.075	46.22	1	29035000			33461	4496	21129	21244	32211	32211					-0.003902353015632798
TIDESGSIL	9	Unmodified	_TIDESGSIL_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	934.4747314453125	1	934.472768	933.465492	0.9066	0.0008472	2.2985	0.0021479	3.2051	0.0029951	934.4729479055104	44.206	0.41537	43.898	43.655	44.071	-0.30759					15	7	3	0	0	0	0.019399	1	16488	16488		97.075	36.685	1	8673400			33462	4496	21129	21244	32212	32212					-0.003902353015632798
TIDGPSKV	8	Unmodified	_TIDGPSKV_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF;nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	408.7267150878906	2	408.726718	815.438883	-0.026688	-1.0908E-05	0.0075941	3.1039E-06	-0.019094	-7.8044E-06	408.726651418293	23.815	0.41706	23.753	23.582	23.999	-0.061449					9	7	2	0	0	0	0.557	1	8450	8450		36.127	5.9022	1	1472900			33463	6105	21130	21245	32213	32213					0.023781205977684294
TIDIDVLP	8	Unmodified	_TIDIDVLP_					0	0	0			REV__nc|ENSG00000290611|Q6ZSU1|CYP2G1P	REV__nc|ENSG00000290611|Q6ZSU1|CYP2G1P	MSMS	HCT116MG_D190212_S4	4	443.2488098144531	2	443.250026	884.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.728	1	40.35	39.85	40.85	-0.37828								0	0	0	0.8837	1	14953	14953		15.768	4.6538	1		+		33464	17329	21131	21246	32214	32214					0.03863560429056179
TIDKATGILLY	11	Unmodified	_TIDKATGILLY_					0	0	0		nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1;ENST00000482438.2_1_3:49141637-49142166:-|nuORF;ENST00000479495.5_1_3:49140063-49142467:-|nuORF	nc|ENSG00000172053|P47897-2|QARS1	nc|ENSG00000172053|P47897-2|QARS1	MSMS	HCT116MG_D190212_S2	2	604.35107421875	2	604.350271	1206.68599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.143	1	49.978	49.478	50.478	-0.1657								0	0	0	0.0013126	1	19211	19211		97.741	15.826	1				33465	5232	21132	21247	32215	32215					0.09091410025871483
TIDLVLVI	8	Unmodified	_TIDLVLVI_					0	0	0			REV__NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant	REV__NWD1|p.N1368Kfs*41|1|0.32|ENSG00000188039|chr19:16807950-16807951|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	443.2864990234375	2	443.286411	884.55827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.449	1	40.379	39.879	40.879	-0.069626								0	0	0	0.8217	1	15254	15254		20.871	0	1		+		33466	13943	21133	21248	32216	32216					0.11137314222469286
TIDVIPKWLG	10	Unmodified	_TIDVIPKWLG_					0	0	0			REV__ENST00000302079.10_2_18:10794839-10794998:-|nuORF	REV__ENST00000302079.10_2_18:10794839-10794998:-|nuORF	MSMS	HCT116MG_D190212_S3	3	571.3345947265625	2	571.334424	1140.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.716	1	36.415	35.915	36.915	-0.30113								0	0	0	0.94107	1	13576	13576		6.7232	0	1		+		33467	14794	21134	21249	32217	32217					0.08959462062557577
TIEALKNRF	9	Unmodified	_TIEALKNRF_					0	0	0		nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA;ENST00000559156.5_1_15:70968828-70976706:-|nuORF;ENST00000560523.5_1_15:70964229-70991966:-|nuORF;UACA|p.L426Hfs*14|1|0.04|ENSG00000137831|chr15:70669407-70669408|-/AAAT|frameshift_variant	nc|ENSG00000137831|Q9BZF9-2|UACA	nc|ENSG00000137831|Q9BZF9-2|UACA	MSMS	HCT116MG_D190212_S2	2	546.3132934570312	2	546.314023	1090.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.935	1	40.865	40.365	41.365	-0.069626								0	0	0	0.3563	1	15451	15451		36.044	1.9418	1				33468	3509	21135	21250	32218	32218					0.07181120742939129
TIECCSPRCSL	11	Unmodified	_TIECCSPRCSL_					0	0	0			REV__ENST00000398125.5_1_4:2930412-2930646:+|nuORF	REV__ENST00000398125.5_1_4:2930412-2930646:+|nuORF	MSMS	HCT116MG_D190212_S1	1	606.2625122070312	2	606.264501	1210.51445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.089	1	40.089	39.589	40.589	0								0	0	0	0.93717	1	15058	15058		13.042	2.9685	1		+		33469	15372	21136	21251	32219	32219					-0.0823872960013432
TIEDNVNI	8	Unmodified	_TIEDNVNI_					0	0	0		tr|U7SMC5|U7SMC5_FUSNUUDP-3-O-[3-hydroxymyristoyl]glucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01954PE=4SV=1	tr|U7SMC5|U7SMC5_FUSNUUDP-3-O-[3-hydroxymyristoyl]glucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01954PE=4SV=1	tr|U7SMC5|U7SMC5_FUSNUUDP-3-O-[3-hydroxymyristoyl]glucosamineN-acyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01954PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	459.2802429199219	2	459.232364	916.450176	0.41246	0.00018942	-0.29113	-0.0001337	0.12133	5.5717E-05	459.23219569033836	39.251	0.31955	38.95	38.82	39.14	-0.30137					8	5	2	0	0	0	0.31507	1	14637	14637		5.2307	3.1709	1	6075100			33470	18350	21137	21252	32220	32220					-0.011391020987730371
TIELKALRLL	10	Unmodified	_TIELKALRLL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;SMARCA4|p.S828Lfs*117|1|0.15|ENSG00000127616|chr19:11018994-11018995|-/C|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MSMS	HCT116MG_D190212_S2	2	585.384521484375	2	585.384448	1168.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.83	1	61.688	61.188	62.188	-0.14227								0	0	0	0.96521	1	23955	23955		1.3295	0	1				33471	2974	21138	21253	32221	32221					0.1767169939635096
TIEPVIIP	8	Unmodified	_TIEPVIIP_					0	0	0			REV__tr|U7T8K7|U7T8K7_FUSNUPhagetailproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00085PE=4SV=1	REV__tr|U7T8K7|U7T8K7_FUSNUPhagetailproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00085PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	441.2697448730469	2	441.270761	880.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.474	1	35.175	34.675	35.675	-0.29922								0	0	0	0.8837	1	13090	13090		14.582	0	1		+		33472	18009	21139	21254	32222	32222					0.08192741188372565
TIETSGIEA	9	Unmodified	_TIETSGIEA_					0	0	0			REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	920.4568481445312	1	920.457118	919.449842	1.0851	0.00099875	-0.55616	-0.00051192	0.5289	0.00048683	920.4564224997208	33.185	0.20779	32.974	32.845	33.052	-0.21135					5	3	2	0	0	0	0.1037	1	12315	12315		57.471	2.6978	1	23816000	+		33473	12203	21140	21255	32223	32223					-0.013105218186183265
TIETSGIEA	9	Unmodified	_TIETSGIEA_					0	0	0			REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	920.45751953125	1	920.457118	919.449842	1.0083	0.00092811	-0.43912	-0.00040419	0.56919	0.00052392	920.4563502587365	33.332	0.20908	32.95	32.881	33.09	-0.38223					17	11	2	0	0	0	0.19218	1	12125	12125		42.095	2.1372	1	7944400	+		33474	12203	21140	21255	32224	32224					-0.013105218186183265
TIETSGIEA	9	Unmodified	_TIETSGIEA_					0	0	0			REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	920.457118	919.449842	1.0851	0.00099875	-0.55616	-0.00051192	0.5289	0.00048683	920.4564224997208	33.185	0.20779	32.974	32.845	33.052	-0.21135	0.011156	-0.0002262	NaN	57.471	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23816000	+		33475	12203	21140	21255							-0.013105218186183265
TIETSGIEA	9	Unmodified	_TIETSGIEA_					0	0	0			REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	920.457118	919.449842	0.92122	0.00084794	0.36228	0.00033346	1.2835	0.0011814	920.4569345410201	33.255	0.35001	32.964	32.902	33.252	-0.29013	0.0018632	0.00061918	NaN	57.471	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15761000	+		33476	12203	21140	21255							-0.013105218186183265
TIETSGIEA	9	Unmodified	_TIETSGIEA_					0	0	0			REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	REV__RTCA|p.G165Vfs*4|1|0.38|ENSG00000137996|chr1:100274840-100274840|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	920.457118	919.449842	1.0083	0.00092811	-0.43912	-0.00040419	0.56919	0.00052392	920.4563502587365	33.332	0.20908	32.95	32.881	33.09	-0.38223	-0.01302	-0.00011847	NaN	57.471	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7944400	+		33477	12203	21140	21255							-0.013105218186183265
TIFKMKPP	8	Unmodified	_TIFKMKPP_					0	0	0			REV__ANKFY1-UBE2G1|1|fusion	REV__ANKFY1-UBE2G1|1|fusion	MULTI-MSMS	HCT116MG_D190212_S4	4	481.7691650390625	2	481.280606	960.546659	0.35362	0.00017019	0.47377	0.00022801	0.82738	0.0003982	481.2803312785343	46.438	0.69873	46.066	45.941	46.64	-0.37134					22	16	3	0	0	0	0.81821	1	17193	17193		9.3474	3.587	1	3023700	+		33478	9936	21141	21256	32225	32225					0.06480793927494233
TIGQRTKRNRK	11	Unmodified	_TIGQRTKRNRK_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.E1241Nfs*2|1|0.06|ENSG00000078177|chr4:40121830-40121831|-/GAATT|frameshift_variant;N4BP2|p.S1460Ifs*17|1|0.33|ENSG00000078177|chr4:40126175-40126176|-/A|frameshift_variant	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MSMS	HCT116MG_D190212_S3	3	679.4110717773438	2	679.410383	1356.80621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.013	1	50.699	50.199	51.199	-0.31381								0	0	0	0.95636	1	19251	19251		2.9952	1.3426	1				33479	1361	21142	21257	32226	32226					0.1420825586283172
TIGRFEEPISQ	11	Unmodified	_TIGRFEEPISQ_					0	0	0			REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	639.2682495117188	2	638.830234	1275.64592	0.45775	0.00029242	0.31953	0.00020413	0.77728	0.00049655	638.8305651892549	42.006	0.42455	41.63	41.413	41.838	-0.37637					14	8	2	0	0	0	0.71776	1	15350	15350		15.248	0	1	6144000	+		33480	12422	21143	21258	32227	32227					0.01911863355303467
TIGRFEEPISQ	11	Unmodified	_TIGRFEEPISQ_					0	0	0			REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	REV__GRIP2|p.L561Sfs*95|1|0.1|ENSG00000144596|chr3:14514395-14514395|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	639.2682495117188	2	638.830234	1275.64592	0.45775	0.00029242	0.31953	0.00020413	0.77728	0.00049655	638.8305651892549	42.006	0.42455	41.63	41.413	41.838	-0.37637					14	8	2	0	0	0	0.36112	1	15350	15350		15.248	0	1	6144000	+		33481	12422	21143	21258	32228	32228					0.01911863355303467
TIHLAVFIGLW	11	Unmodified	_TIHLAVFIGLW_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MSMS	HCT116MG_D190212_S1	1	635.372314453125	2	635.371341	1268.72813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.747	1	52.747	52.247	53.247	0								0	0	0	0.95581	1	20183	20183		3.2813	0	1		+		33482	14150	21144	21259	32229	32229					0.10451430224884461
TIHPLQALSSL	11	Unmodified	_TIHPLQALSSL_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MSMS	HCT116MG_D190212_S2	2	590.740966796875	2	590.340238	1178.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.903	1	35.775	35.275	36.275	-0.12799								0	0	0	0.94755	1	13409	13409		7.609	0.50723	1				33483	5708	21145	21260	32230	32230					0.08373659085896179
TIHYSRGEIF	10	Unmodified	_TIHYSRGEIF_					0	0	0			REV__ENST00000474341.5_1_2:9017150-9098660:-|nuORF	REV__ENST00000474341.5_1_2:9017150-9098660:-|nuORF	MSMS	HCT116MG_D190212_S2	2	408.2127990722656	3	408.212017	1221.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.123	1	41.054	40.554	41.554	-0.068199								0	0	0	0.90023	1	15528	15528		9.544	2.9136	1		+		33484	12403	21146	21261	32231	32231					0.012279153919735109
TIHYWRLE	8	Unmodified	_TIHYWRLE_					0	0	0			REV__nc|ENSG00000206120|Q0D2K5|EGFEM1P	REV__nc|ENSG00000206120|Q0D2K5|EGFEM1P	MSMS	HCT116MG_D190212_S4	4	373.19677734375	3	373.197819	1116.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.283	1	28.934	28.434	29.434	-0.34921								0	0	0	0.8837	1	10568	10568		6.7232	0	1		+		33485	17274	21147	21262	32232	32232					0.018005650544182572
TIIAKIFRFS	10	Unmodified	_TIIAKIFRFS_					0	0	0			REV__ENST00000608872.5_1_9:123523527-123523641:-|nuORF	REV__ENST00000608872.5_1_9:123523527-123523641:-|nuORF	MSMS	HCT116MG_D190212_S1	1	399.24627685546875	3	399.24477	1194.71248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.502	1	47.502	47.002	48.002	0								0	0	0	0.96263	1	18050	18050		1.9064	0.71303	1		+		33486	16786	21148	21263	32233	32233					0.12291143707830088
TIIKPRVHK	9	Unmodified	_TIIKPRVHK_					0	0	0			REV__ENSG00000132938|ENST00000612955|MTUS2	REV__ENSG00000132938|ENST00000612955|MTUS2	MSMS	HCT116MG_D190212_S4	4	546.35595703125	2	546.356025	1090.6975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.164	1	58.887	58.387	59.387	-0.27731								0	0	0	0.7701	1	22258	22258		0.52476	0	1		+		33487	12011	21149	21264	32234	32234					0.15577696630498394
TIIPTYNFL	9	Unmodified	_TIIPTYNFL_					0	0	0		tr|U7T2Y8|U7T2Y8_FUSNUDihydroxyacetonekinase,LsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00508PE=4SV=1	tr|U7T2Y8|U7T2Y8_FUSNUDihydroxyacetonekinase,LsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00508PE=4SV=1	tr|U7T2Y8|U7T2Y8_FUSNUDihydroxyacetonekinase,LsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00508PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	541.302001953125	2	541.30005	1080.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.975	1	55.687	55.187	56.187	-0.28773								0	0	0	0.768	1	21240	21240		7.9102	0.62092	1				33488	18585	21150	21265	32235	32235					0.04847797762840855
TIKKLRKKVLA	11	Unmodified	_TIKKLRKKVLA_					0	0	0		ENST00000502917.1_1_4:4269618-4270421:-|nuORF;ENSG00000145220|ENST00000343470|LYAR	ENST00000502917.1_1_4:4269618-4270421:-|nuORF	ENST00000502917.1_1_4:4269618-4270421:-|nuORF	MSMS	HCT116MG_D190212_S1	1	649.4561767578125	2	649.455739	1296.89693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.254	1	37.254	36.754	37.754	0								0	0	0	0.96157	1	13913	13913		0.26902	0	1				33489	3901	21151	21266	32236	32236					0.2603533185840661
TIKSQTSHRGY	11	Unmodified	_TIKSQTSHRGY_					0	0	0		CON__P50446	CON__P50446	CON__P50446	MSMS	HCT116MG_D190212_S2	2	639.3255615234375	2	639.333476	1276.6524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.121	1	38.028	37.528	38.528	-0.09301								0	0	0	0.88801	1	14312	14312		21.537	2.28	1			+	33490	565	21152	21267	32237	32237					0.025138013066452913
TIKVLLLDVLD	11	Unmodified	_TIKVLLLDVLD_					0	0	0			REV__ENST00000476314.1_1_20:58494499-58496505:-|nuORF	REV__ENST00000476314.1_1_20:58494499-58496505:-|nuORF	MSMS	HCT116MG_D190212_S2	2	621.8388061523438	2	621.389396	1240.76424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.371	1	53.182	52.682	53.682	-0.18922								0	0	0	0.94538	1	20523	20523		8.7454	0	1		+		33491	15916	21153	21268	32238	32238					0.1534884261109255
TILHLIQRR	9	Unmodified	_TILHLIQRR_					0	0	0			REV__ENSG00000174016|ENST00000308293|TENT5D	REV__ENSG00000174016|ENST00000308293|TENT5D	MSMS	HCT116MG_D190212_S4	4	575.03662109375	2	575.364382	1148.71421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.93	1	50.575	50.075	51.075	-0.35483								0	0	0	0.76913	1	18939	18939		3.9444	0.66309	1		+		33492	13466	21154	21269	32239	32239					0.14580197516465887
TILIIRRIKLL	11	Unmodified	_TILIIRRIKLL_					0	0	0		ENST00000491832.6_1_6:56955645-56989586:+|nuORF	ENST00000491832.6_1_6:56955645-56989586:+|nuORF	ENST00000491832.6_1_6:56955645-56989586:+|nuORF	MSMS	HCT116MG_D190212_S2	2	676.4794921875	2	676.479215	1350.94388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.418	1	41.35	40.85	41.85	-0.068199								0	0	0	0.96208	1	15649	15649		0	0	1				33493	8346	21155	21270	32240	32240					0.2824419140954433
TILIIRRLHK	10	Unmodified	_TILIIRRLHK_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.G1136Afs*4|1|0.27|ENSG00000127616|chr19:11030751-11030751|G/-|frameshift_variant;nc|ENSG00000127616|P51532-4|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;SMARCA4|p.P1453Lfs*10|1|0.31|ENSG00000127616|chr19:11041491-11041491|C/-|frameshift_variant;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF	ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MSMS	HCT116MG_D190212_S3	3	631.9251708984375	2	631.924606	1261.83466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.558	1	39.257	38.757	39.757	-0.30137								0	0	0	0.95507	1	14688	14688		3.5965	1.5367	1				33494	2974	21156	21271	32241	32241					0.2142160551006782
TILKAHQP	8	Unmodified	_TILKAHQP_					0	0	0		CELSR2-KIAA1324|1|fusion;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;ENST00000369936.2_1_1:109730792-109745631:+|nuORF;ENST00000369938.5_1_1:109730226-109745631:+|nuORF;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1	CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-SECPEP	HCT116MG_D190212_S1	1	454.2470397949219	2	454.271627	906.528701	0.057786	2.6251E-05	-0.31195	-0.00014171	-0.25416	-0.00011546	454.27138246577636	26.86	0.26074	26.86	26.709	26.97	0					8	4	2	0	0	0	0.29402	1	9717	9717		16.942	16.942	1	4550200			33495	397	21157	21272	32242	32242					0.07169794996991641
TILKEKPD	8	Unmodified	_TILKEKPD_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MSMS	HCT116MG_D190212_S1	1	472.27496337890625	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.156	1	42.156	41.656	42.656	0								0	0	0	0.8837	1	15892	15892		5.2307	0	1				33496	1114	21158	21273	32243	32243					0.06502938211713172
TILLFFLLHRW	11	Unmodified	_TILLFFLLHRW_					0	0	0		ENST00000339924.12_2_19:55351009-55359395:+|nuORF;nc|ENSG00000221957|P43632|KIR2DS4	ENST00000339924.12_2_19:55351009-55359395:+|nuORF	ENST00000339924.12_2_19:55351009-55359395:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	729.451416015625	2	729.93464	1457.85473	1.0018	0.00073128	0.2386	0.00017416	1.2404	0.00090544	729.9346674720574	54.617	2.1548	54.428	53.532	55.687	-0.1894					134	41	5	0	0	0	0.74191	1	21313	21313		5.7319	5.7319	1	381670000			33497	7211	21159	21274	32244	32244					0.1441135645002305
TILLFFLLHRW	11	Unmodified	_TILLFFLLHRW_					0	0	0		ENST00000339924.12_2_19:55351009-55359395:+|nuORF;nc|ENSG00000221957|P43632|KIR2DS4	ENST00000339924.12_2_19:55351009-55359395:+|nuORF	ENST00000339924.12_2_19:55351009-55359395:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	729.93464	1457.85473	0.91635	0.00066887	0.45816	0.00033442	1.3745	0.0010033	729.9347915883676	54.781	1.1988	54.457	53.775	54.974	-0.32348	0.0040737	0.00014176	NaN	5.7319	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28813000			33498	7211	21159	21274							0.1441135645002305
TILMKALQ	8	Unmodified	_TILMKALQ_					0	0	0		nc|ENSG00000163046|A7E2S9-2|ANKRD30BL;ENSG00000163046|ENST00000409867|ANKRD30BL	nc|ENSG00000163046|A7E2S9-2|ANKRD30BL	nc|ENSG00000163046|A7E2S9-2|ANKRD30BL	MSMS	HCT116MG_D190212_S1	1	459.2794494628906	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.574	1	46.574	46.074	47.074	0								0	0	0	0.8837	1	17674	17674		4.756	0	1				33499	4576	21160	21275	32245	32245					0.07996490064874706
TILMKALQ	8	Unmodified	_TILMKALQ_					0	0	0		nc|ENSG00000163046|A7E2S9-2|ANKRD30BL;ENSG00000163046|ENST00000409867|ANKRD30BL	nc|ENSG00000163046|A7E2S9-2|ANKRD30BL	nc|ENSG00000163046|A7E2S9-2|ANKRD30BL	MSMS	HCT116MG_D190212_S4	4	459.28021240234375	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.419	1	50.06	49.56	50.56	-0.35878								0	0	0	0.8837	1	18732	18732		13.508	0	1				33500	4576	21160	21275	32246	32246					0.07996490064874706
TILRWIQFHKF	11	Unmodified	_TILRWIQFHKF_					0	0	0			REV__ENST00000575209.5_1_17:5386088-5389490:-|nuORF	REV__ENST00000575209.5_1_17:5386088-5389490:-|nuORF	MSMS	HCT116MG_D190212_S3	3	496.99420166015625	3	496.95399	1487.84014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.353	1	53.05	52.55	53.55	-0.30305								0	0	0	0.96121	1	20191	20191		0.45452	0	1		+		33501	10783	21161	21276	32247	32247					0.11573284301857711
TILSIIDVCF	10	Unmodified	_TILSIIDVCF_					0	0	0		ENST00000310045.7_1_18:65181780-65181852:-|nuORF	ENST00000310045.7_1_18:65181780-65181852:-|nuORF	ENST00000310045.7_1_18:65181780-65181852:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	562.7744750976562	2	562.307018	1122.59948	0.3549	0.00019956	0.32843	0.00018468	0.68333	0.00038424	562.3072398175976	49.164	0.30301	49.01	48.834	49.137	-0.15405					8	5	2	0	0	0	0.26807	1	18811	18811		34.402	3.7652	1	76965000			33502	7049	21162	21277	32248	32248					0.0430870719962968
TIMPKDIQL	9	Unmodified	_TIMPKDIQL_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000168148|ENST00000366696|H3-4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S1	1	529.7994995117188	2	529.79936	1057.58417	0.38298	0.0002029	0.21706	0.000115	0.60004	0.0003179	529.7994081129574	46.885	0.25895	46.885	46.751	47.01	0					9	4	3	0	0	0	0.0096523	1	17823	17823		114.2	43.068	1	31696000			33503	3188	21163	21278	32249	32249					0.057678404024500196
TIMPKDIQL	9	Unmodified	_TIMPKDIQL_					0	0	0		ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000168148|ENST00000366696|H3-4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000197409|ENST00000356476|H3C4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000203852|ENST00000403683|H3C15	ENSG00000203852|ENST00000403683|H3C15	MULTI-MSMS	HCT116MG_D190212_S2	2	530.3016357421875	2	529.79936	1057.58417	0.76106	0.00040321	0.34923	0.00018502	1.1103	0.00058823	530.3009867329348	46.995	0.30766	46.873	46.718	47.026	-0.12175					10	5	2	0	0	0	0.016744	2	17953	17953;17976		99.755	38.398	1	44575000			33504	3188	21163	21278	32250;32251	32250					0.057678404024500196
TIMTGVIGV	9	Unmodified	_TIMTGVIGV_					0	0	0		nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	MULTI-MSMS	HCT116MG_D190212_S2	2	890.4992065429688	1	890.501566	889.494289	0.76869	0.00068452	-0.88482	-0.00078793	-0.11613	-0.00010341	890.5005196574601	53.233	0.25868	53.044	52.913	53.172	-0.18922					6	4	2	0	0	0	0.1037	1	20483	20483		57.471	13.064	1	11937000			33505	5674	21164	21279	32252	32252					0.045122107938937006
TINAKRLRSY	10	Unmodified	_TINAKRLRSY_					0	0	0			REV__ENST00000489998.5_1_1:157765891-157772050:-|nuORF	REV__ENST00000489998.5_1_1:157765891-157772050:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	407.90716552734375	3	407.906928	1220.69895	-0.089929	-3.6683E-05	-0.71325	-0.00029094	-0.80318	-0.00032762	407.9066955397798	51.914	0.62703	51.914	51.756	52.383	0					17	11	3	0	0	0	0.86862	1	19862	19862		3.3196	0	1	16040000	+		33506	12930	21165	21280	32253	32253					0.09743285928607293
TINFEIEGP	9	Unmodified	_TINFEIEGP_					0	0	0			REV__ENST00000538915.2_1_17:12853006-12862275:+|nuORF	REV__ENST00000538915.2_1_17:12853006-12862275:+|nuORF	MSMS	HCT116MG_D190212_S3	3	510.2559509277344	2	510.25584	1018.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.981	1	35.68	35.18	36.18	-0.30042								0	0	0	0.74436	1	13279	13279		16.942	1.0951	1		+		33507	10490	21166	21281	32254	32254					-0.0113824254760857
TINGHNAEV	9	Unmodified	_TINGHNAEV_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S1	1	477.73583984375	2	477.735606	953.456658	0.17712	8.4615E-05	0.041061	1.9616E-05	0.21818	0.00010423	477.7355399768479	22.037	0.36547	22.037	21.906	22.272	0					8	6	2	0	0	0	0.026272	1	7800	7800		90.135	48.04	1	8798500			33508	2769	21167	21282	32255	32255					-0.021931641473884156
TINGHNAEV	9	Unmodified	_TINGHNAEV_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S2	2	477.7355651855469	2	477.735606	953.456658	0.33157	0.0001584	-0.09586	-4.5796E-05	0.23571	0.00011261	477.7354797117341	22.514	0.20693	22.128	22.051	22.258	-0.3852					5	3	2	0	0	0	0.026272	1	8002	8002		90.135	37.867	1	18919000			33509	2769	21167	21282	32256	32256					-0.021931641473884156
TINRPDRLR	9	Unmodified	_TINRPDRLR_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-5|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-5|XRRA1	MSMS	HCT116MG_D190212_S1	1	380.8907470703125	3	380.891389	1139.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9739	1	4.9739	4.4739	5.4739	0								0	0	0	0.77018	1	1500	1500		0.26902	0	1		+		33510	13106	21168	21283	32257	32257					0.08809846097301488
TINVNTYSAT	10	Unmodified	_TINVNTYSAT_					0	0	0			REV__SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	REV__SPTBN5|p.G2751Afs*60|1|0.08|ENSG00000137877|chr15:41857685-41857685|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	542.2697143554688	2	542.269478	1082.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.776	1	26.776	26.276	27.276	0								0	0	0	0.82952	1	9689	9689		24.991	5.734	1		+		33511	12198	21169	21284	32258	32258					-0.013557590072650783
TIPEAFRGV	9	Unmodified	_TIPEAFRGV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	HCT116MG_D190212_S1	1	495.27447509765625	2	495.274367	988.53418	0.25994	0.00012874	-0.65203	-0.00032293	-0.39209	-0.00019419	495.2740702986141	42.971	0.57355	42.971	42.743	43.316	0					18	10	3	0	0	0	0.1754	1	16213	16213		43.858	2.0187	1	11784000			33512	6419	21170	21285	32259	32259					0.03945473788803611
TIPIKELQ	8	Unmodified	_TIPIKELQ_					0	0	0		ENST00000450253.6_1_4:99801895-99802249:-|nuORF	ENST00000450253.6_1_4:99801895-99802249:-|nuORF	ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	471.2863464355469	2	471.286943	940.559333	0.096932	4.5683E-05	-0.33452	-0.00015765	-0.23759	-0.00011197	471.28672065349593	39.981	0.36245	39.908	39.687	40.05	-0.072838					11	6	2	0	0	0	0.60268	1	15078	15078		32.117	0	1	13458000			33513	7979	21171	21286	32260	32260					0.0866752859137705
TIPPLNGA	8	Unmodified	_TIPPLNGA_					0	0	0			REV__nc|ENSG00000134897|Q86UB2-2|BIVM	REV__nc|ENSG00000134897|Q86UB2-2|BIVM	MSMS	HCT116MG_D190212_S4	4	391.7226867675781	2	391.723978	781.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.953	1	43.579	43.079	44.079	-0.37373								0	0	0	0.8837	1	16175	16175		0.69038	0	1		+		33514	12073	21172	21287	32261	32261					0.03394441805937731
TIQIKYLDEEN	11	Unmodified	_TIQIKYLDEEN_					0	0	0		NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant;NBR1|p.L746Wfs*50|1|0.23|ENSG00000188554|chr17:43200372-43200372|C/-|frameshift_variant;nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant	NBR1|p.G521Wfs*2|1|0.25|ENSG00000188554|chr17:43194383-43194384|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	683.3524780273438	2	683.348457	1364.68236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.596	1	43.29	42.79	43.79	-0.30616								0	0	0	0.95408	1	16272	16272		4.1895	1.1943	1				33515	5989	21173	21288	32262	32262					0.014606954613327616
TIQKIVYVIF	10	Unmodified	_TIQKIVYVIF_					0	0	0			REV__nc|ENSG00000122882|O95905-2|ECD	REV__nc|ENSG00000122882|O95905-2|ECD	MSMS	HCT116MG_D190212_S2	2	612.7100830078125	2	612.373549	1222.73255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.48	1	52.293	51.793	52.793	-0.18725								0	0	0	0.88261	1	20161	20161		18.146	1.0335	1		+		33516	11749	21174	21289	32263	32263					0.13008894647782654
TIQSKRQTP	9	Unmodified	_TIQSKRQTP_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	HCT116MG_D190212_S3	3	529.8013916015625	2	529.80128	1057.58801	0.6087	0.00032249	1.7985	0.00095285	2.4072	0.0012753	529.8024427100055	29.711	0.37115	29.474	29.344	29.715	-0.23655					14	6	3	0	0	0	0.45867	1	10854	10854		19.257	1.122	1	7551400			33517	3129	21175	21290	32264	32264					0.06151646220519069
TIQSLSLVL	9	Unmodified	_TIQSLSLVL_					0	0	0		ENST00000534947.5_1_12:6833660-6833753:+|nuORF	ENST00000534947.5_1_12:6833660-6833753:+|nuORF	ENST00000534947.5_1_12:6833660-6833753:+|nuORF	MSMS	HCT116MG_D190212_S2	2	487.30010986328125	2	487.30005	972.585547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.325	1	52.138	51.638	52.638	-0.18725								0	0	0	0.59795	1	20097	20097		24.021	0	1				33518	8658	21176	21291	32265	32265					0.09815797762848888
TIQVVDRFV	9	Unmodified	_TIQVVDRFV_					0	0	0			REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant	REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	538.8088989257812	2	538.808574	1075.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.401	1	52.214	51.714	52.714	-0.18725								0	0	0	0.76655	1	20129	20129		13.042	1.4022	1		+		33519	10070	21177	21292	32266	32266					0.06781718368665679
TIQVVDRFV	9	Unmodified	_TIQVVDRFV_					0	0	0			REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant	REV__C1S|p.Q658Sfs*11|1|0.25|ENSG00000182326|chr12:7070553-7070553|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.8088989257812	2	538.808574	1075.60259	0.66277	0.0003571	1.7038	0.00091805	2.3666	0.0012752	538.8085987438677	52.325	0.25713	52.138	52.038	52.295	-0.18725					5	4	2	0	0	0	0.2458	1	20129	20129		13.042	6.8367	1	8953700	+		33520	10070	21177	21292	32267	32267					0.06781718368665679
TIRQLHVRLR	10	Unmodified	_TIRQLHVRLR_					0	0	0			REV__MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	REV__MKS1|p.P200Lfs*29|1|0.09|ENSG00000011143|chr17:58214304-58214304|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	646.4080200195312	2	646.407112	1290.79967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.276	1	61.035	60.535	61.535	-0.24028								0	0	0	0.96937	1	23383	23383		0.40072	0	1		+		33521	10522	21178	21293	32268	32268					0.16590362702118
TISARLKRVH	10	Unmodified	_TISARLKRVH_					0	0	0			REV__ENST00000414898.1_1_1:241995599-241995785:+|nuORF	REV__ENST00000414898.1_1_1:241995599-241995785:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	590.8667602539062	2	590.867289	1179.72002	0.59104	0.00034923	-1.1282	-0.00066665	-0.53721	-0.00031742	590.8663529339327	55.297	0.47782	55.005	54.822	55.3	-0.2918					11	8	2	0	0	0	0.89204	1	21007	21007		1.3295	1.3295	1	3056500	+		33522	10964	21179	21294	32269	32269					0.13735296028107769
TISKGLLQKY	10	Unmodified	_TISKGLLQKY_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	575.3115234375	2	575.845156	1149.67576	0.65997	0.00038004	-1.7498	-0.0010076	-1.0899	-0.00062759	576.3460056417337	48.063	1.1833	47.93	46.911	48.095	-0.13281					33	22	2	0	0	0	0.2945	1	18119	18119		16.149	3.1066	1	106300000	+		33523	11358	21180	21295	32270	32270					0.10690847091291289
TISLKLQRSS	10	Unmodified	_TISLKLQRSS_					0	0	0			REV__ENST00000566284.1_1_16:57467902-57474840:-|nuORF	REV__ENST00000566284.1_1_16:57467902-57474840:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	567.3401489257812	2	566.837862	1131.66117	0.50246	0.00028481	0.085705	4.8581E-05	0.58816	0.00033339	566.8377818491252	54.125	0.78141	53.795	53.457	54.239	-0.32923					24	14	2	0	0	0	0.86862	1	20181	20181		6.2058	0.9089	1	10626000	+		33524	10472	21181	21296	32271	32271					0.10060774943121942
TISTRNELKAL	11	Unmodified	_TISTRNELKAL_					0	0	0			REV__UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant	REV__UNC13C|p.F1525Lfs*3|2|0.44|ENSG00000137766|chr15:54333842-54333842|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	415.91015625	3	415.910227	1244.70885	0.07354	3.0586E-05	-0.1364	-5.6731E-05	-0.062861	-2.6144E-05	415.9101305927628	20.39	0.20845	20.39	20.279	20.488	0					5	3	2	0	0	0	0.74191	1	7160	7160		2.8433	2.8433	1	3798500	+		33525	12188	21182	21297	32272	32272					0.09628429143322137
TISYATEP	8	Unmodified	_TISYATEP_					0	0	0			REV__ENSG00000105426|ENST00000262963|PTPRS	REV__ENSG00000105426|ENST00000262963|PTPRS	MSMS	HCT116MG_D190212_S4	4	441.2170715332031	2	441.216183	880.417813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.205	1	38.825	38.325	39.325	-0.38055								0	0	0	0.8217	1	14397	14397		20.871	0	1		+		33526	11253	21183	21298	32273	32273					-0.02717889501764148
TITLSLRKRR	10	Unmodified	_TITLSLRKRR_					0	0	0			REV__ENST00000415136.6_2_1:20981990-20982236:-|nuORF	REV__ENST00000415136.6_2_1:20981990-20982236:-|nuORF	MSMS	HCT116MG_D190212_S4	4	622.4008178710938	2	622.401496	1242.78844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.31	1	40.932	40.432	41.432	-0.37732								0	0	0	0.96377	1	15187	15187		1.6526	0	1		+		33527	15464	21184	21299	32274	32274					0.17675540607956464
TITPVWEKRKK	11	Unmodified	_TITPVWEKRKK_					0	0	0			REV__FAM161A|p.L319Ffs*8|1|0.25|ENSG00000170264|chr2:61840047-61840048|-/A|frameshift_variant	REV__FAM161A|p.L319Ffs*8|1|0.25|ENSG00000170264|chr2:61840047-61840048|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	693.41845703125	2	693.416811	1384.81907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.969	1	56.79	56.29	57.29	-0.17904								0	0	0	0.93717	1	21988	21988		13.042	3.6593	1		+		33528	13287	21185	21300	32275	32275					0.14205274202345208
TITTTIIA	8	Unmodified	_TITTTIIA_					0	0	0			REV__SEZ6|p.T229A|1|0.17|ENSG00000063015|chr17:28981410-28981410|T/C|missense_variant	REV__SEZ6|p.T229A|1|0.17|ENSG00000063015|chr17:28981410-28981410|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	417.2536926269531	2	417.252569	832.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.363	1	58.093	57.593	58.593	-0.26932								0	0	0	0.8837	1	22200	22200		5.2307	0	1		+		33529	17511	21186	21301	32276	32276					0.06763864291667687
TIVGGGNGTEL	11	Unmodified	_TIVGGGNGTEL_					0	0	0			REV__FAHD2B|p.N54Tfs*8|1|0.06|ENSG00000144199|chr2:97091546-97091547|-/AAGTAAG|frameshift_variant	REV__FAHD2B|p.N54Tfs*8|1|0.06|ENSG00000144199|chr2:97091546-97091547|-/AAGTAAG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7658996582031	2	509.264196	1016.51384	0.22891	0.00011658	0.11477	5.8451E-05	0.34369	0.00017503	509.26426011116524	33.503	0.81624	33.212	32.955	33.771	-0.29013					10	6	2	0	0	0	0.70662	1	12228	12228		19.362	2.4196	1	14522000	+		33530	16804	21187	21302	32277	32277					0.006242583383254896
TIVGNPRR	8	Unmodified	_TIVGNPRR_					0	0	0			REV__nc|ENSG00000122068|Q96QD9-4|FYTTD1	REV__nc|ENSG00000122068|Q96QD9-4|FYTTD1	MULTI-MSMS	HCT116MG_D190212_S4	4	456.7715148925781	2	456.772326	911.530098	0.052707	2.4075E-05	0.010915	4.9858E-06	0.063622	2.9061E-05	456.77223386445604	49.348	1.7456	48.986	48.46	50.205	-0.36234					96	37	5	0	0	0	0.86564	1	18429	18429		2.5775	0	1	346040000	+		33531	11727	21188	21303	32278	32278					0.07079429085752054
TIVTQRRG	8	Unmodified	_TIVTQRRG_					0	0	0		ADRA1A|p.Y134C|1|0.12|ENSG00000120907|chr8:26864569-26864569|T/C|missense_variant;ADRA1A|p.G217Afs*16|2|0.24|ENSG00000120907|chr8:26864320-26864320|C/-|frameshift_variant;nc|ENSG00000120907|P35348-5|ADRA1A;nc|ENSG00000120907|P35348-7|ADRA1A;nc|ENSG00000120907|P35348-6|ADRA1A;nc|ENSG00000120907|P35348-8|ADRA1A;nc|ENSG00000120907|P35348-9|ADRA1A;nc|ENSG00000120907|P35348-3|ADRA1A;nc|ENSG00000120907|P35348-4|ADRA1A;ENSG00000120907|ENST00000380573|ADRA1A;nc|ENSG00000120907|P35348-2|ADRA1A	ADRA1A|p.Y134C|1|0.12|ENSG00000120907|chr8:26864569-26864569|T/C|missense_variant	ADRA1A|p.Y134C|1|0.12|ENSG00000120907|chr8:26864569-26864569|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	465.7779541015625	2	465.777608	929.540663	0.45617	0.00021247	-0.21856	-0.0001018	0.23761	0.00011067	465.77739642033924	44.973	1.3231	44.664	44.295	45.618	-0.30927					46	28	2	0	0	0	0.8506	1	16981	16981		5.2307	0	1	11440000			33532	67	21189	21304	32279	32279					0.07307411740180214
TIVTQRRG	8	Unmodified	_TIVTQRRG_					0	0	0		ADRA1A|p.Y134C|1|0.12|ENSG00000120907|chr8:26864569-26864569|T/C|missense_variant;ADRA1A|p.G217Afs*16|2|0.24|ENSG00000120907|chr8:26864320-26864320|C/-|frameshift_variant;nc|ENSG00000120907|P35348-5|ADRA1A;nc|ENSG00000120907|P35348-7|ADRA1A;nc|ENSG00000120907|P35348-6|ADRA1A;nc|ENSG00000120907|P35348-8|ADRA1A;nc|ENSG00000120907|P35348-9|ADRA1A;nc|ENSG00000120907|P35348-3|ADRA1A;nc|ENSG00000120907|P35348-4|ADRA1A;ENSG00000120907|ENST00000380573|ADRA1A;nc|ENSG00000120907|P35348-2|ADRA1A	ADRA1A|p.Y134C|1|0.12|ENSG00000120907|chr8:26864569-26864569|T/C|missense_variant	ADRA1A|p.Y134C|1|0.12|ENSG00000120907|chr8:26864569-26864569|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	465.777587890625	2	465.777608	929.540663	-0.014765	-6.8774E-06	0.27102	0.00012623	0.25625	0.00011936	465.777624144864	44.962	1.2662	44.589	44.335	45.601	-0.37326					73	37	2	0	0	0	0.8506	1	16745	16745		5.2307	0	1	18889000			33533	67	21189	21304	32280	32280					0.07307411740180214
TIVVITKILRP	11	Unmodified	_TIVVITKILRP_					0	0	0		nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5;nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-2|ADGRF5	nc|ENSG00000069122|Q8IZF2-2|ADGRF5	MSMS	HCT116MG_D190212_S3	3	626.9207763671875	2	626.921198	1251.82784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.149	1	41.846	41.346	42.346	-0.30331								0	0	0	0.95954	1	15693	15693		1.3295	0	1				33534	1213	21190	21305	32281	32281					0.21200247838828545
TIWLFKHRRVR	11	Unmodified	_TIWLFKHRRVR_					0	0	0		ENSG00000065923|ENST00000616978|SLC9A7;nc|ENSG00000065923|Q96T83|SLC9A7;SLC9A7|p.N185Qfs*62|1|0.35|ENSG00000065923|chrX:46679729-46679730|-/A|frameshift_variant;SLC9A7|p.F255Lfs*11|1|0.37|ENSG00000065923|chrX:46669635-46669635|A/-|frameshift_variant	ENSG00000065923|ENST00000616978|SLC9A7	ENSG00000065923|ENST00000616978|SLC9A7	MSMS	HCT116MG_D190212_S4	4	756.459228515625	2	756.457136	1510.89972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.141	1	43.767	43.267	44.267	-0.37373								0	0	0	0.96149	1	16251	16251		0.30703	0	1				33535	1163	21191	21306	32282	32282					0.16470600035881944
TIWSFVCKQ	9	Unmodified	_TIWSFVCKQ_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MSMS	HCT116MG_D190212_S3	3	371.1010437011719	3	371.191677	1110.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.76	1	25.632	25.132	26.132	-0.12795								0	0	0	0.768	1	9211	9211		4.897	0	1		+		33536	10557	21192	21307	32283	32283					0.0023468708818654704
TIYTSSEG	8	Unmodified	_TIYTSSEG_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MSMS	HCT116MG_D190212_S3	3	429.08868408203125	2	429.19799	856.381428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.616	1	32.331	31.831	32.831	-0.28511								0	0	0	0.8837	1	11960	11960		9.3474	2.9933	1		+		33537	17171	21193	21308	32284	32284					-0.05250766398455653
TKDGDRPK	8	Unmodified	_TKDGDRPK_					0	0	0		ENSG00000111725|ENST00000229328|PRKAB1	ENSG00000111725|ENST00000229328|PRKAB1	ENSG00000111725|ENST00000229328|PRKAB1	MULTI-MSMS	HCT116MG_D190212_S2	2	458.7458190917969	2	458.745973	915.477394	0.19817	9.0911E-05	-0.24505	-0.00011241	-0.046874	-2.1503E-05	458.7458451874178	24.646	0.26094	24.266	24.135	24.396	-0.38003					7	4	2	0	0	0	0.73234	1	8866	8866		19.257	0	1	14404000			33538	2313	21194	21309	32285	32285					0.016274262322895083
TKDLKEDW	8	Unmodified	_TKDLKEDW_					0	0	0		CCDC178|p.K632Rfs*9|1|0.1|ENSG00000166960|chr18:33223143-33223143|T/-|frameshift_variant;CCDC178|p.K155Vfs*20|1|0.48|ENSG00000166960|chr18:33346405-33346406|TT/-|frameshift_variant;CCDC178|p.K291Nfs*11|1|0.33|ENSG00000166960|chr18:33333179-33333180|TT/-|frameshift_variant;CCDC178|p.N384Mfs*13|1|0.29|ENSG00000166960|chr18:33293184-33293184|T/-|frameshift_variant;CCDC178|p.K634Efs*5|1|0.55|ENSG00000166960|chr18:33223142-33223143|-/T|frameshift_variant;CCDC178|p.Y665Mfs*4|2|0.25|ENSG00000166960|chr18:33215635-33215635|A/-|frameshift_variant;nc|ENSG00000166960|Q5BJE1-3|CCDC178;nc|ENSG00000166960|Q5BJE1-2|CCDC178;nc|ENSG00000166960|Q5BJE1-4|CCDC178;ENSG00000166960|ENST00000383096|CCDC178	CCDC178|p.K632Rfs*9|1|0.1|ENSG00000166960|chr18:33223143-33223143|T/-|frameshift_variant	CCDC178|p.K632Rfs*9|1|0.1|ENSG00000166960|chr18:33223143-33223143|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	517.7469482421875	2	517.761289	1033.50803	0.42333	0.00021919	-0.40416	-0.00020926	0.019173	9.9272E-06	517.7616210455449	36.181	0.37127	36.181	35.993	36.365	0					10	6	2	0	0	0	0.29044	1	13508	13508		25.399	4.9848	1	2470700			33539	346	21195	21310	32286	32286					-0.007388401733351202
TKEAVSTVSQ	10	Unmodified	_TKEAVSTVSQ_					0	0	0			REV__ENSG00000173267|ENST00000372017|SNCG	REV__ENSG00000173267|ENST00000372017|SNCG	MULTI-SECPEP	HCT116MG_D190212_S2	2	524.7767944335938	2	525.277303	1048.54005	0.73383	0.00038546	2.9776	0.001564	3.7114	0.0019495	525.7812428572888	47.873	0.35995	47.74	47.532	47.892	-0.13281					15	6	4	0	0	0	0.29687	1	18254	18254		12.175	1.0603	1	35562000	+		33540	13428	21196	21311	32287	32287					0.01772527509797328
TKEDFLEA	8	Unmodified	_TKEDFLEA_					0	0	0			REV__ENST00000487855.1_1_2:220145378-220147307:+|nuORF	REV__ENST00000487855.1_1_2:220145378-220147307:+|nuORF	MSMS	HCT116MG_D190212_S1	1	476.73480224609375	2	476.73474	951.454927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.959	1	37.959	37.459	38.459	0								0	0	0	0.7984	1	14197	14197		22.736	2.2827	1		+		33541	16008	21197	21312	32288	32288					-0.022742179560054865
TKEKGAEIP	9	Unmodified	_TKEKGAEIP_					0	0	0		ENSG00000110318|ENST00000263468|CEP126;CEP126|p.L630Tfs*5|1|0.5|ENSG00000110318|chr11:101962916-101962917|-/A|frameshift_variant;CEP126|p.L933Yfs*21|1|0.42|ENSG00000110318|chr11:101963829-101963829|C/-|frameshift_variant	ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	MULTI-MSMS	HCT116MG_D190212_S2	2	487.273193359375	2	486.771657	971.528761	0.17629	8.5815E-05	-0.051767	-2.5199E-05	0.12453	6.0616E-05	486.77169696129937	22.772	0.67639	22.387	22.206	22.882	-0.38521					20	12	2	0	0	0	0.22946	1	8144	8144		38.176	1.6694	1	5516300			33542	2242	21198	21313	32289	32289					0.04185750206318062
TKEVNSGFFY	10	Unmodified	_TKEVNSGFFY_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-MSMS	HCT116MG_D190212_S2	2	596.2879028320312	2	596.287671	1190.56079	0.64236	0.00038303	0.25535	0.00015226	0.89771	0.0005353	596.2876323277814	46.119	0.25704	46.017	45.863	46.12	-0.1014					11	4	3	0	0	0	0.112	1	17582	17582		71.708	0	1	22085000			33543	9462	21199	21314	32290	32290					-0.026868821105153984
TKEVNSGFFY	10	Unmodified	_TKEVNSGFFY_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-MSMS	HCT116MG_D190212_S3	3	596.2881469726562	2	596.287671	1190.56079	0.85012	0.00050692	0.090817	5.4153E-05	0.94094	0.00056107	596.2877204586387	46.413	0.25258	46.1	45.978	46.231	-0.31237					8	4	3	0	0	0	0.20072	2	17427	17415;17427		59.368	0	1	6726900			33544	9462	21199	21314	32291;32292	32292					-0.026868821105153984
TKFAILKVLLP	11	Unmodified	_TKFAILKVLLP_					0	0	0			REV__ENST00000426767.1_1_7:29690666-29690840:-|nuORF	REV__ENST00000426767.1_1_7:29690666-29690840:-|nuORF	MSMS	HCT116MG_D190212_S3	3	621.9140625	2	621.912842	1241.81113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.484	1	24.4	23.9	24.9	-0.083694								0	0	0	0.95636	1	8697	8697		2.9952	1.151	1		+		33545	15559	21200	21315	32293	32293					0.19989746952910536
TKGPSESVSHP	11	Unmodified	_TKGPSESVSHP_					0	0	0			REV__nc|ENSG00000211640|P01721|IGLV6-57	REV__nc|ENSG00000211640|P01721|IGLV6-57	MULTI-MSMS	HCT116MG_D190212_S2	2	563.2804565429688	2	563.280377	1124.5462	-0.010543	-5.9385E-06	-0.046941	-2.6441E-05	-0.057484	-3.238E-05	563.2803528471612	18.554	0.52079	18.191	18.008	18.529	-0.36325					11	9	2	0	0	0	0.65731	1	6414	6414		29.082	0	1	11733000	+		33546	17279	21201	21316	32294	32294					-0.011089542586432799
TKHFCSYDV	9	Unmodified	_TKHFCSYDV_					0	0	0			REV__KCNJ4|p.R335C|1|0.31|ENSG00000168135|chr22:38427130-38427130|G/A|missense_variant	REV__KCNJ4|p.R335C|1|0.31|ENSG00000168135|chr22:38427130-38427130|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	367.2699279785156	3	367.16742	1098.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.567	1	44.194	43.694	44.694	-0.37326								0	0	0	0.76954	1	16424	16424		2.4985	1.3051	1		+		33547	16917	21202	21317	32295	32295					-0.06487066705221878
TKHLRDEDI	9	Unmodified	_TKHLRDEDI_					0	0	0			REV__SGCB|p.F171Lfs*25|1|0.44|ENSG00000163069|chr4:52028838-52028838|A/-|frameshift_variant	REV__SGCB|p.F171Lfs*25|1|0.44|ENSG00000163069|chr4:52028838-52028838|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	376.1990966796875	3	376.199889	1125.57784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.932	1	49.571	49.071	50.071	-0.36175								0	0	0	0.76948	1	18535	18535		2.7352	0	1		+		33548	12907	21203	21318	32296	32296					0.020070384952759923
TKISKRRE	8	Unmodified	_TKISKRRE_					0	0	0			REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.31201171875	2	509.311815	1016.60908	0.34982	0.00017817	0.013154	6.6993E-06	0.36297	0.00018487	509.31173370426234	51.021	1.705	50.842	50.238	51.943	-0.17868					96	32	4	0	0	0	0.85571	1	19606	19606		4.3292	0	1	673240000	+		33549	10684	21204	21319	32297	32297					0.10143656320042282
TKITKIKQT	9	Unmodified	_TKITKIKQT_					0	0	0			REV__tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	REV__tr|U7SJ85|U7SJ85_FUSNUThioredoxin-disulfidereductaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02144PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	530.8397216796875	2	530.839874	1059.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.041	1	10.86	10.36	11.36	-0.18135								0	0	0	0.76983	1	3406	3406		1.4819	0.28856	1		+		33550	17689	21205	21320	32298	32298					0.13774864436845746
TKITSVTSVVS	11	Unmodified	_TKITSVTSVVS_					0	0	0		TLX1|p.A326V|1|0.38|ENSG00000107807|chr10:101136897-101136897|C/T|missense_variant	TLX1|p.A326V|1|0.38|ENSG00000107807|chr10:101136897-101136897|C/T|missense_variant	TLX1|p.A326V|1|0.38|ENSG00000107807|chr10:101136897-101136897|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	561.32373046875	2	561.324254	1120.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.82	1	31.571	31.071	32.071	-0.24883								0	0	0	0.90489	1	11752	11752		19.362	2.249	1				33551	18272	21206	21321	32299	32299					0.07846246612098184
TKKEKKERHKR	11	Unmodified	_TKKEKKERHKR_					0	0	0			REV__ENSG00000170004|ENST00000330494|CHD3	REV__ENSG00000170004|ENST00000330494|CHD3	MSMS	HCT116MG_D190212_S2	2	734.4458618164062	2	734.446966	1466.87938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.261	1	49.107	48.607	49.607	-0.15405								0	0	0	0.95574	1	18848	18848		3.3196	0.82116	1		+		33552	13275	21207	21322	32300	32300					0.16461384585431915
TKKFRRILLLN	11	Unmodified	_TKKFRRILLLN_					0	0	0			REV__ENSG00000180815|ENST00000338883|MAP3K15	REV__ENSG00000180815|ENST00000338883|MAP3K15	MSMS	HCT116MG_D190212_S1	1	701.4559326171875	2	701.456271	1400.89799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.219	1	36.219	35.719	36.719	0								0	0	0	0.9598	1	13498	13498		1.1933	0	1		+		33553	13670	21208	21323	32301	32301					0.21357546227341118
TKKKGKLM	8	Unmodified	_TKKKGKLM_					0	0	0			REV__ENST00000456350.5_1_20:33813686-33859810:-|nuORF	REV__ENST00000456350.5_1_20:33813686-33859810:-|nuORF	MSMS	HCT116MG_D190212_S3	3	467.30078125	2	467.29933	932.584108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.188	1	54.896	54.396	55.396	-0.2918								0	0	0	0.8837	1	20929	20929		0.79363	0	1		+		33554	15750	21209	21324	32302	32302					0.11511885193112903
TKKKKKKEKKR	11	Unmodified	_TKKKKKKEKKR_					0	0	0		ENST00000406913.1_1_6:122001334-122001505:-|nuORF	ENST00000406913.1_1_6:122001334-122001505:-|nuORF	ENST00000406913.1_1_6:122001334-122001505:-|nuORF	MSMS	HCT116MG_D190212_S2	2	477.2656555175781	3	477.327827	1428.96165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.888	1	49.724	49.224	50.224	-0.16369								0	0	0	0.96208	1	19106	19106		0	0	1				33555	7717	21210	21325	32303	32303					0.2643290666437679
TKKKKKKKKG	10	Unmodified	_TKKKKKKKKG_					0	0	0		ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204963|ENST00000525929|PCDHA7;ENSG00000081842|ENST00000529310|PCDHA6;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6;ENSG00000204965|ENST00000529859|PCDHA5;nc|ENSG00000204970|Q9Y5I3-2|PCDHA1;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000250120|ENST00000307360|PCDHA10;ENSG00000249158|ENST00000398640|PCDHA11;nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;ENSG00000255408|ENST00000522353|PCDHA3;ENSG00000239389|ENST00000289272|PCDHA13;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000204970|ENST00000504120|PCDHA1;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000248383|ENST00000253807|PCDHAC1;ENSG00000251664|ENST00000398631|PCDHA12	ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000204970|ENST00000504120|PCDHA1;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000248383|ENST00000253807|PCDHAC1;ENSG00000251664|ENST00000398631|PCDHA12	ENSG00000204961|ENST00000532602|PCDHA9	MSMS	HCT116MG_D190212_S1	1	401.28692626953125	3	401.28708	1200.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.274	1	26.274	25.774	26.774	0								0	0	0	0.97116	1	9486	9486		0	0	1				33556	6360;6361;6362;6557;6573;6582	21211	21326	32304	32304					0.24702489652827353
TKKKKKKKKG	10	Unmodified	_TKKKKKKKKG_					0	0	0		ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204963|ENST00000525929|PCDHA7;ENSG00000081842|ENST00000529310|PCDHA6;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6;ENSG00000204965|ENST00000529859|PCDHA5;nc|ENSG00000204970|Q9Y5I3-2|PCDHA1;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000250120|ENST00000307360|PCDHA10;ENSG00000249158|ENST00000398640|PCDHA11;nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;ENSG00000255408|ENST00000522353|PCDHA3;ENSG00000239389|ENST00000289272|PCDHA13;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000204970|ENST00000504120|PCDHA1;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000248383|ENST00000253807|PCDHAC1;ENSG00000251664|ENST00000398631|PCDHA12	ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000204970|ENST00000504120|PCDHA1;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000248383|ENST00000253807|PCDHAC1;ENSG00000251664|ENST00000398631|PCDHA12	ENSG00000204961|ENST00000532602|PCDHA9	MSMS	HCT116MG_D190212_S2	2	401.2868347167969	3	401.28708	1200.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.759	1	30.492	29.992	30.992	-0.26704								0	0	0	0.97116	1	11321	11321		0	0	1				33557	6360;6361;6362;6557;6573;6582	21211	21326	32305	32305					0.24702489652827353
TKKKKKKKKG	10	Unmodified	_TKKKKKKKKG_					0	0	0		ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204963|ENST00000525929|PCDHA7;ENSG00000081842|ENST00000529310|PCDHA6;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6;ENSG00000204965|ENST00000529859|PCDHA5;nc|ENSG00000204970|Q9Y5I3-2|PCDHA1;ENSG00000204967|ENST00000530339|PCDHA4;ENSG00000250120|ENST00000307360|PCDHA10;ENSG00000249158|ENST00000398640|PCDHA11;nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;ENSG00000255408|ENST00000522353|PCDHA3;ENSG00000239389|ENST00000289272|PCDHA13;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000204970|ENST00000504120|PCDHA1;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000248383|ENST00000253807|PCDHAC1;ENSG00000251664|ENST00000398631|PCDHA12	ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204969|ENST00000526136|PCDHA2;ENSG00000204970|ENST00000504120|PCDHA1;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000248383|ENST00000253807|PCDHAC1;ENSG00000251664|ENST00000398631|PCDHA12	ENSG00000204961|ENST00000532602|PCDHA9	MSMS	HCT116MG_D190212_S3	3	401.5594482421875	3	401.28708	1200.83941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.504	1	28.298	27.798	28.798	-0.20593								0	0	0	0.97116	1	10318	10318		0	0	1				33558	6360;6361;6362;6557;6573;6582	21211	21326	32306	32306					0.24702489652827353
TKKKKKKKKM	10	Unmodified	_TKKKKKKKKM_					0	0	0		ENST00000367558.5_1_1:182569199-182569457:-|nuORF	ENST00000367558.5_1_1:182569199-182569457:-|nuORF	ENST00000367558.5_1_1:182569199-182569457:-|nuORF	MSMS	HCT116MG_D190212_S1	1	425.9608154296875	3	425.960087	1274.85843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.832	1	10.832	10.332	11.332	0								0	0	0	0.97116	1	3355	3355		0	0	1				33559	7391	21212	21327	32307	32307					0.2319970295220628
TKKKKKKKKM	10	Unmodified	_TKKKKKKKKM_					0	0	0		ENST00000367558.5_1_1:182569199-182569457:-|nuORF	ENST00000367558.5_1_1:182569199-182569457:-|nuORF	ENST00000367558.5_1_1:182569199-182569457:-|nuORF	MSMS	HCT116MG_D190212_S1	1	425.9609069824219	3	425.960087	1274.85843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.417	1	11.417	10.917	11.917	0								0	0	0	0.97116	1	3591	3591		0	0	1				33560	7391	21212	21327	32308	32308					0.2319970295220628
TKKKKKKKKR	10	Unmodified	_TKKKKKKKKR_					0	0	0		ENST00000340726.7_1_8:72274331-72274436:-|nuORF	ENST00000340726.7_1_8:72274331-72274436:-|nuORF	ENST00000340726.7_1_8:72274331-72274436:-|nuORF	MSMS	HCT116MG_D190212_S4	4	651.30078125	2	650.966806	1299.91906	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.064	1	26.752	26.252	27.252	-0.3114								0	0	0	0.97116	1	9671	9671		0	0	1				33561	7213	21213	21328	32309	32309					0.2810955632680816
TKLHKLKRR	9	Unmodified	_TKLHKLKRR_					0	0	0			REV__ENST00000542123.5_1_12:12966350-12967071:+|nuORF	REV__ENST00000542123.5_1_12:12966350-12967071:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	590.8941040039062	2	590.393474	1178.77239	0.52461	0.00030972	-1.5607	-0.00092142	-1.0361	-0.0006117	590.8939087199449	58.236	0.23973	58.236	58.173	58.413	0					5	4	2	0	0	0	0.27049	1	22462	22462		0.52476	0	1	72804000	+		33562	16375	21214	21329	32310	32310					0.19015879161725024
TKLNFGMLRK	10	Unmodified	_TKLNFGMLRK_					0	0	0		CCL27|p.P101T|1|0.24|ENSG00000213927|chr9:34661982-34661982|G/T|missense_variant	CCL27|p.P101T|1|0.24|ENSG00000213927|chr9:34661982-34661982|G/T|missense_variant	CCL27|p.P101T|1|0.24|ENSG00000213927|chr9:34661982-34661982|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	604.3541259765625	2	604.352625	1206.6907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.236	1	35.85	35.35	36.35	-0.38558								0	0	0	0.94925	1	13252	13252		4.897	0.56777	1				33563	359	21215	21330	32311	32311					0.09562015687606618
TKLNRVVHSGK	11	Unmodified	_TKLNRVVHSGK_					0	0	0			REV__ENST00000556335.1_1_14:86018043-86019103:+|nuORF	REV__ENST00000556335.1_1_14:86018043-86019103:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	413.916015625	3	413.582444	1237.7255	-0.21663	-8.9593E-05	-0.75976	-0.00031422	-0.97639	-0.00040382	413.5820567768884	51.014	1.4442	51.014	49.905	51.349	0					48	27	2	0	0	0	0.74191	1	19414	19414		1.0136	0.088041	1	18211000	+		33564	16463	21216	21331	32312	32312					0.11614974819917734
TKLTRLSRS	9	Unmodified	_TKLTRLSRS_					0	0	0			REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	531.3247680664062	2	531.324922	1060.63529	0.59616	0.00031675	0.051707	2.7473E-05	0.64786	0.00034423	531.3248503971582	51.943	1.7505	51.759	51.013	52.763	-0.18369					96	33	5	0	0	0	0.67781	1	19963	19963		6.7232	6.7232	1	436730000	+		33565	15378	21217	21332	32313	32313					0.1073992549149807
TKLTRLSRS	9	Unmodified	_TKLTRLSRS_					0	0	0			REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	531.3250732421875	2	531.324922	1060.63529	0.45936	0.00024407	0.18823	0.00010001	0.64759	0.00034408	531.3249258040651	52.459	1.6628	52.119	51.679	53.342	-0.34023					83	31	4	0	0	0	0.69329	2	19440	19440;19662		5.7319	3.5965	1	81848000	+		33566	15378	21217	21332	32314;32315	32314					0.1073992549149807
TKNRKWFYRG	10	Unmodified	_TKNRKWFYRG_					0	0	0		tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1	tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1	tr|U7SUA0|U7SUA0_FUSNUCalcineurin-likephosphoesterasedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01155PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	678.3735961914062	2	678.370195	1354.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.499	1	43.426	42.926	43.926	-0.073376								0	0	0	0.95648	1	16495	16495		3.2813	0	1				33567	18468	21218	21333	32316	32316					0.06266394539784415
TKPALKSE	8	Unmodified	_TKPALKSE_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MSMS	HCT116MG_D190212_S4	4	437.255126953125	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.299	1	50.949	50.449	51.449	-0.35028								0	0	0	0.8837	1	19088	19088		4.756	0.81161	1				33568	2836	21219	21334	32317	32317					0.05538382523195651
TKPEDNEDER	10	Unmodified	_TKPEDNEDER_					0	0	0		nc|ENSG00000162267|Q06033-2|ITIH3;ENSG00000162267|ENST00000449956|ITIH3;ITIH3|p.A614V|1|0.24|ENSG00000162267|chr3:52803986-52803986|C/T|missense_variant;ENST00000475931.1_1_3:52836712-52838129:+|nuORF	nc|ENSG00000162267|Q06033-2|ITIH3	nc|ENSG00000162267|Q06033-2|ITIH3	MULTI-MSMS	HCT116MG_D190212_S4	4	1232.539306640625	1	1232.53895	1231.53167	0.36959	0.00045553	-0.25537	-0.00031476	0.11422	0.00014078	1232.5388067723654	39.139	0.27517	38.758	38.54	38.815	-0.38055					7	5	2	0	0	0	0.88823	1	14392	14392		1.4819	0	1	2871600			33569	4510	21220	21335	32318	32318					-0.07483071197498248
TKPFIKNIVLT	11	Unmodified	_TKPFIKNIVLT_					0	0	0		ENST00000374227.7_2_9:115804781-115804988:-|nuORF	ENST00000374227.7_2_9:115804781-115804988:-|nuORF	ENST00000374227.7_2_9:115804781-115804988:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	424.9328918457031	3	425.267463	1272.78056	-0.16941	-7.2044E-05	0.18959	8.0627E-05	0.020184	8.5835E-06	425.2675605757008	50.978	0.61973	50.978	50.678	51.297	0					20	11	2	0	0	0	0.3662	1	19420	19420		1.2148	0	1	33977000			33570	7492	21221	21336	32319	32319					0.15507968567817443
TKPGKERRTLP	11	Unmodified	_TKPGKERRTLP_					0	0	0		ENST00000234091.8_1_2:8819035-8819278:+|nuORF	ENST00000234091.8_1_2:8819035-8819278:+|nuORF	ENST00000234091.8_1_2:8819035-8819278:+|nuORF	MSMS	HCT116MG_D190212_S1	1	641.8828735351562	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.943	1	52.943	52.443	53.443	0								0	0	0	0.94851	1	20263	20263		7.1017	0.37856	1				33571	6773	21222	21337	32320	32320					0.12211243991418996
TKPHNLLHL	9	Unmodified	_TKPHNLLHL_					0	0	0			REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	REV__RICTOR|p.S1495Pfs*13|1|0.05|ENSG00000164327|chr5:38945642-38945643|-/ATTCTGGG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	537.3193969726562	2	536.816733	1071.61891	0.46901	0.00025177	0.36901	0.00019809	0.83802	0.00044986	536.8161560389649	55.294	0.30452	55.106	54.867	55.171	-0.18797					10	5	3	0	0	0	0.65706	1	21283	21283		7.9102	1.187	1	36850000	+		33572	13000	21223	21338	32321	32321					0.08596844325438724
TKPKKLAKMPN	11	Unmodified	_TKPKKLAKMPN_					0	0	0			REV__SETD2|p.S2452L|1|0.21|ENSG00000181555|chr3:47019836-47019836|G/A|missense_variant	REV__SETD2|p.S2452L|1|0.21|ENSG00000181555|chr3:47019836-47019836|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	419.2575988769531	3	419.256681	1254.74821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.136	1	50.957	50.457	51.457	-0.17868								0	0	0	0.95731	1	19612	19612		1.0136	0	1		+		33573	17508	21224	21339	32322	32322					0.131028578932046
TKPKKPKLPL	10	Unmodified	_TKPKKPKLPL_					0	0	0		ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	575.3876953125	2	575.389534	1148.76451	0.31506	0.00018128	-4.2477	-0.0024441	-3.9326	-0.0022628	575.3864265627627	58.438	0.40504	58.438	58.261	58.666	0					15	7	3	0	0	0	0.88823	1	22526	22526		1.4819	0	1	49616000			33574	7258	21225	21340	32323	32323					0.19608307121598045
TKPKTTAI	8	Unmodified	_TKPKTTAI_					0	0	0		nc|ENSG00000164741|Q96QB1-5|DLC1;nc|ENSG00000164741|Q96QB1-3|DLC1;DLC1|p.R617Gfs*37|2|0.15|ENSG00000164741|chr8:13100488-13100488|G/-|frameshift_variant;DLC1|p.S830Rfs*7|1|0.33|ENSG00000164741|chr8:13099850-13099850|G/-|frameshift_variant;DLC1|p.Q1096Sfs*33|1|0.29|ENSG00000164741|chr8:13095127-13095127|G/-|frameshift_variant;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-5|DLC1	nc|ENSG00000164741|Q96QB1-5|DLC1	MSMS	HCT116MG_D190212_S3	3	430.2648620605469	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.816	1	37.515	37.015	38.015	-0.30137								0	0	0	0.8837	1	13994	13994		2.3027	0	1				33575	682	21226	21341	32324	32324					0.08254972902830104
TKPLFFNL	8	Unmodified	_TKPLFFNL_					0	0	0			REV__ENST00000409458.3_2_7:23296839-23297073:+|nuORF	REV__ENST00000409458.3_2_7:23296839-23297073:+|nuORF	MSMS	HCT116MG_D190212_S3	3	490.285888671875	2	490.284203	978.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.316	1	35.017	34.517	35.517	-0.29922								0	0	0	0.8837	1	13031	13031		8.5933	0.68312	1		+		33576	15436	21227	21342	32325	32325					0.06371849799552365
TKPLKAFTV	9	Unmodified	_TKPLKAFTV_					0	0	0		nc|ENSG00000132693|P02741-2|CRP;ENSG00000132693|ENST00000255030|CRP	nc|ENSG00000132693|P02741-2|CRP	nc|ENSG00000132693|P02741-2|CRP	MSMS	HCT116MG_D190212_S1	1	502.81109619140625	2	502.810585	1003.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.352	1	54.352	53.852	54.852	0								0	0	0	0.76818	1	20840	20840		7.2892	2.0586	1				33577	3203	21228	21343	32326	32326					0.10495807862378115
TKPPRPKK	8	Unmodified	_TKPPRPKK_					0	0	0			REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	MSMS	HCT116MG_D190212_S1	1	476.3066711425781	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.428	1	42.428	41.928	42.928	0								0	0	0	0.8837	1	16002	16002		2.3027	1.5091	1		+		33578	12501	21229	21344	32327	32327					0.12525763159317194
TKPPRPKK	8	Unmodified	_TKPPRPKK_					0	0	0			REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	MSMS	HCT116MG_D190212_S3	3	476.3064270019531	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.257	1	54.965	54.465	55.465	-0.2918								0	0	0	0.8837	1	20956	20956		2.0598	0.21551	1		+		33579	12501	21229	21344	32328	32328					0.12525763159317194
TKQKLKLTM	9	Unmodified	_TKQKLKLTM_					0	0	0			REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	MSMS	HCT116MG_D190212_S3	3	364.2250061035156	3	364.22661	1089.658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.361	1	38.06	37.56	38.56	-0.30137								0	0	0	0.76886	1	14208	14208		4.897	2.3985	1		+		33580	13669	21230	21345	32329	32329					0.11675808564746148
TKRALAIATI	10	Unmodified	_TKRALAIATI_					0	0	0			REV__TMEM215|p.A55T|1|0.28|ENSG00000188133|chr9:32784346-32784346|G/A|missense_variant	REV__TMEM215|p.A55T|1|0.28|ENSG00000188133|chr9:32784346-32784346|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	353.2283630371094	3	353.229119	1056.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.306	1	63.306	62.806	63.806	0								0	0	0	0.97045	1	24457	24457		0.15932	0.15932	1		+		33581	17646	21231	21346	32330	32330					0.13946284156691036
TKRGRPTA	8	Unmodified	_TKRGRPTA_					0	0	0			REV__nc|ENSG00000141027|O75376-3|NCOR1	REV__nc|ENSG00000141027|O75376-3|NCOR1	MULTI-MSMS	HCT116MG_D190212_S4	4	443.7646484375	2	443.764501	885.514448	0.27026	0.00011993	-0.31069	-0.00013787	-0.040438	-1.7945E-05	443.76427728896533	42.941	0.3456	42.566	42.254	42.6	-0.37493					9	6	2	0	0	0	0.8698	1	15781	15781		1.8442	0	1	4088700	+		33582	12322	21232	21347	32331	32331					0.06711142568678952
TKRLLLRIP	9	Unmodified	_TKRLLLRIP_					0	0	0		ENST00000461865.1_1_X:38008966-38013244:-|nuORF	ENST00000461865.1_1_X:38008966-38013244:-|nuORF	ENST00000461865.1_1_X:38008966-38013244:-|nuORF	MSMS	HCT116MG_D190212_S3	3	555.666259765625	2	555.3795	1108.74445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.598	1	43.292	42.792	43.792	-0.30616								0	0	0	0.76902	1	16273	16273		4.3292	0.38484	1				33583	8060	21233	21348	32332	32332					0.19442556181638793
TKRTKGGLPL	10	Unmodified	_TKRTKGGLPL_					0	0	0		tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	tr|U7SFU6|U7SFU6_FUSNUAminoacidpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02238PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	535.8386840820312	2	535.837665	1069.66078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.078	1	58.078	57.578	58.578	0								0	0	0	0.95507	1	22362	22362		3.5965	1.019	1				33584	18292	21234	21349	32333	32333					0.1287340001395023
TKSGAAAPP	9	Unmodified	_TKSGAAAPP_					0	0	0			REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant	REV__MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	400.2176818847656	2	400.21906	798.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.458	1	38.156	37.656	38.656	-0.30137								0	0	0	0.76877	1	14247	14247		5.2307	0	1		+		33585	17039	21235	21350	32334	32334					0.01629253800558672
TKSLLNAI	8	Unmodified	_TKSLLNAI_					0	0	0		tr|U7SV32|U7SV32_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01496PE=3SV=1	tr|U7SV32|U7SV32_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01496PE=3SV=1	tr|U7SV32|U7SV32_FUSNUPeptide/nickeltransportsystemATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01496PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	430.265869140625	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.277	1	24.997	24.497	25.497	-0.27958								0	0	0	0.8837	1	8949	8949		4.756	0	1				33586	18486	21236	21351	32335	32335					0.08254972902830104
TKSLVALK	8	Unmodified	_TKSLVALK_					0	0	0		ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	MSMS	HCT116MG_D190212_S3	3	430.2826232910156	2	430.284203	858.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.671	1	48.355	47.855	48.855	-0.31596								0	0	0	0.8837	1	18312	18312		0.6015	0	1				33587	5526	21237	21352	32336	32336					0.11891849799542342
TKTLKMWF	8	Unmodified	_TKTLKMWF_					0	0	0		nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.I1709Nfs*6|1|0.34|ENSG00000197969|chr9:77318397-77318398|-/A|frameshift_variant;VPS13A|p.N2071Tfs*18|2|0.32|ENSG00000197969|chr9:77337367-77337367|A/-|frameshift_variant;VPS13A|p.Y2315Ifs*2|1|0.09|ENSG00000197969|chr9:77340463-77340463|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-2|VPS13A	nc|ENSG00000197969|Q96RL7-2|VPS13A	MSMS	HCT116MG_D190212_S4	4	352.19635009765625	3	352.196651	1053.56812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.94	1	38.558	38.058	39.058	-0.38163								0	0	0	0.8837	1	14290	14290		3.5965	1.7523	1				33588	9604	21238	21353	32337	32337					0.04348178956183801
TKTLTLFLLL	10	Unmodified	_TKTLTLFLLL_					0	0	0			REV__nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	REV__nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	MSMS	HCT116MG_D190212_S3	3	388.25396728515625	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.484	1	42.18	41.68	42.68	-0.30352								0	0	0	0.97061	1	15827	15827		0.12286	0	1		+		33589	13377	21239	21354	32338	32338					0.16289778790564924
TKYGLLPPL	9	Unmodified	_TKYGLLPPL_					0	0	0			REV__ENST00000554891.5_1_14:21702949-21737544:-|nuORF	REV__ENST00000554891.5_1_14:21702949-21737544:-|nuORF	MSMS	HCT116MG_D190212_S1	1	501.3071594238281	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.143	1	57.143	56.643	57.643	0								0	0	0	0.768	1	21983	21983		7.9102	0.62092	1		+		33590	16445	21240	21355	32339	32339					0.09544405488099983
TKYKNRLQHRK	11	Unmodified	_TKYKNRLQHRK_					0	0	0			REV__ENST00000367012.3_1_1:210419174-210419273:+|nuORF	REV__ENST00000367012.3_1_1:210419174-210419273:+|nuORF	MSMS	HCT116MG_D190212_S1	1	736.4329833984375	2	736.433858	1470.85316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.399	1	48.399	47.899	48.899	0								0	0	0	0.95686	1	18415	18415		2.7352	0.23671	1		+		33591	15112	21241	21356	32340	32340					0.136571154139574
TKYKNRLQHRK	11	Unmodified	_TKYKNRLQHRK_					0	0	0			REV__ENST00000367012.3_1_1:210419174-210419273:+|nuORF	REV__ENST00000367012.3_1_1:210419174-210419273:+|nuORF	MSMS	HCT116MG_D190212_S4	4	736.7644653320312	2	736.433858	1470.85316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.315	1	49.957	49.457	50.457	-0.35878								0	0	0	0.9598	1	18690	18690		1.1933	0	1		+		33592	15112	21241	21356	32341	32341					0.136571154139574
TLAAASLLAL	10	Unmodified	_TLAAASLLAL_					0	0	0			REV__ENSG00000183762|ENST00000400335|KREMEN1	REV__ENSG00000183762|ENST00000400335|KREMEN1	MULTI-MSMS	HCT116MG_D190212_S2	2	943.5823364257812	1	943.582259	942.574983	0.61056	0.00057611	-0.71253	-0.00067233	-0.10197	-9.6219E-05	943.5815393234898	45.529	0.20613	45.436	45.307	45.514	-0.092472					6	3	2	0	0	0	0.30623	1	17335	17335		49.933	0	1	29583000	+		33593	13779	21242	21357	32342	32342					0.10139815108414041
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S1	1	502.7801208496094	2	502.779816	1003.54508	0.30577	0.00015373	-0.12928	-6.4997E-05	0.17649	8.8738E-05	502.7797597002125	43.446	0.20754	43.446	43.316	43.524	0					8	3	3	0	0	0	0.0054498	1	16418	16418		133.7	105.22	1	47735000			33594	6063;18668	21243	21358	32343	32343					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.K3443Sfs*19|1|0.28|ENSG00000196367|chr7:99004246-99004246|A/-|frameshift_variant;TRRAP|p.A1620Cfs*35|1|0.27|ENSG00000196367|chr7:98949499-98949500|-/G|frameshift_variant;TRRAP|p.P1292Lfs*17|1|0.44|ENSG00000196367|chr7:98933258-98933258|C/-|frameshift_variant;TRRAP|p.P1360Afs*14|1|0.05|ENSG00000196367|chr7:98935641-98935642|-/GCAAATAA|frameshift_variant;TRRAP|p.I564Hfs*9|1|0.29|ENSG00000196367|chr7:98910389-98910390|-/G|frameshift_variant;TRRAP-ASNS|1|fusion;TRRAP-ASNS|2|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP;TRRAP-ASNS|1|fusion	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	HCT116MG_D190212_S2	2	502.7796936035156	2	502.779816	1003.54508	0.34749	0.00017471	-0.009893	-4.974E-06	0.3376	0.00016974	502.77971501677985	43.455	0.361	43.382	43.2	43.561	-0.073376					18	6	4	0	0	0	0.0034366	1	16468	16468		179.23	128.37	1	106450000			33595	6063;18668	21243	21358	32344	32344					0.04344876163088429
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7821044921875	2	515.782025	1029.5495	0.20409	0.00010527	0.12628	6.5132E-05	0.33037	0.0001704	515.7819903713262	54.211	0.25737	54.022	53.893	54.15	-0.1894					12	4	4	0	0	0	0.011506	1	20871	20871		109.63	65.222	1	67614000			33596	3043	21244	21359	32345	32345					0.035903405860153725
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	515.782025	1029.5495	0.174	8.9745E-05	0.081383	4.1976E-05	0.25538	0.00013172	515.782238554657	54.333	0.15685	54.037	53.929	54.086	-0.29587	0.007658	-4.3485E-05	NaN	109.63	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2049400			33597	3043	21244	21359							0.035903405860153725
TLAEHIIEA	9	Unmodified	_TLAEHIIEA_					0	0	0		CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	498.7718505859375	2	498.771657	995.528761	0.17873	8.9147E-05	0.43837	0.00021865	0.6171	0.00030779	498.7717451483672	39.792	0.20748	39.792	39.657	39.865	0					8	3	3	0	0	0	0.0017266	1	14944	14944		188.58	117.44	1	14538000			33598	319	21245	21360	32346	32346					0.030817502063428037
TLAEHIIEA	9	Unmodified	_TLAEHIIEA_					0	0	0		CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	498.7716369628906	2	498.771657	995.528761	0.155	7.7311E-05	0.037707	1.8807E-05	0.19271	9.6118E-05	498.77157738523135	39.834	0.36083	39.762	39.584	39.945	-0.072838					12	6	3	0	0	0	0.0035556	1	15009	15009		172.91	94.757	1	93528000			33599	319	21245	21360	32347	32347					0.030817502063428037
TLAEHIIEA	9	Unmodified	_TLAEHIIEA_					0	0	0		CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	498.7721862792969	2	498.771657	995.528761	0.24799	0.00012369	0.65595	0.00032717	0.90394	0.00045086	498.7717214529841	40.026	0.22215	39.725	39.629	39.851	-0.30137					12	5	3	0	0	0	0.0044301	1	14836	14836		144.35	82.993	1	15551000			33600	319	21245	21360	32348	32348					0.030817502063428037
TLAEHIIEA	9	Unmodified	_TLAEHIIEA_					0	0	0		CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	498.7722473144531	2	498.771657	995.528761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.144	1	39.764	39.264	40.264	-0.37936								0	0	0	0.016928	1	14717	14717		96.285	54.19	1				33601	319	21245	21360	32349	32349					0.030817502063428037
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S1	1	543.8245239257812	2	543.823889	1085.63323	0.32238	0.00017532	0.11318	6.155E-05	0.43556	0.00023687	543.8240430014827	50.394	0.25707	50.394	50.266	50.523	0					6	4	2	0	0	0	0.30623	1	19239	19239		49.933	20.851	1	37234000			33602	3974	21246	21361	32350	32350					0.09383451963026346
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;NONO|p.R119Q|1|0.5|ENSG00000147140|chrX:71294234-71294234|G/A|missense_variant	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	HCT116MG_D190212_S2	2	543.8241577148438	2	543.823889	1085.63323	0.57499	0.00031269	0.20942	0.00011389	0.78441	0.00042658	543.8238781007003	50.549	0.41942	50.377	50.191	50.611	-0.1719					11	7	2	0	0	0	0.20843	1	19378	19378		58.679	10.93	1	78491000			33603	3974	21246	21361	32351	32351					0.09383451963026346
TLAEIYVAA	9	Unmodified	_TLAEIYVAA_					0	0	0		ENST00000395756.5_1_17:17715938-17721122:-|nuORF;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	950.5194091796875	1	950.519325	949.512048	0.68163	0.0006479	-0.91794	-0.00087252	-0.23631	-0.00022462	950.5185872426489	47.918	0.25912	47.918	47.789	48.048	0					6	4	2	0	0	0	0.10596	1	18254	18254		50.855	0	1	10124000			33604	1267	21247	21362	32352	32352					0.03527249320370629
TLAELPAD	8	Unmodified	_TLAELPAD_					0	0	0			REV__ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant	REV__ARHGEF17|p.P617Lfs*10|1|0.32|ENSG00000110237|chr11:73310482-73310482|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	415.2178955078125	2	415.218726	828.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.185	1	27.854	27.354	28.354	-0.33138								0	0	0	0.8837	1	10124	10124		12.532	0.89125	1		+		33605	9982	21248	21363	32353	32353					0.0018241436084736051
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MSMS	HCT116MG_D190212_S1	1	487.2821350097656	2	487.281857	972.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.049	1	56.049	55.549	56.549	0								0	0	0	0.27276	1	21538	21538		42.095	13.608	1				33606	3639	21249	21364	32354	32354					0.06178920866148019
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	HCT116MG_D190212_S2	2	487.2820129394531	2	487.281857	972.549162	0.31282	0.00015243	0.13222	6.4427E-05	0.44504	0.00021686	487.2817846521272	56.158	0.15368	55.975	55.847	56.001	-0.18261					6	2	3	0	0	0	0.0054498	1	21665	21665		133.7	25.705	1	49568000			33607	3639	21249	21364	32355	32355					0.06178920866148019
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	HCT116MG_D190212_S2	2	973.5570068359375	1	973.556438	972.549162	0.75418	0.00073423	-0.26422	-0.00025724	0.48995	0.000477	973.5561268670397	56.109	0.20514	55.927	55.847	56.052	-0.18261					7	3	3	0	0	0	0.050578	1	21670	21670		74.423	16.951	1	23123000			33608	3639	21249	21364	32356	32356					0.06178920866148019
TLAGGLVGQLP	11	Unmodified	_TLAGGLVGQLP_					0	0	0			REV__nc|ENSG00000132692|Q96GW7-2|BCAN	REV__nc|ENSG00000132692|Q96GW7-2|BCAN	MSMS	HCT116MG_D190212_S3	3	513.3025512695312	2	513.303124	1024.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.477	1	29.24	28.74	29.74	-0.23655								0	0	0	0.85129	1	10710	10710		26.268	5.8145	1		+		33609	11999	21250	21365	32357	32357					0.0803831599437217
TLAGGLVGQLP	11	Unmodified	_TLAGGLVGQLP_					0	0	0			REV__nc|ENSG00000132692|Q96GW7-2|BCAN	REV__nc|ENSG00000132692|Q96GW7-2|BCAN	MSMS	HCT116MG_D190212_S4	4	513.3021850585938	2	513.303124	1024.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.473	1	37.089	36.589	37.589	-0.3839								0	0	0	0.90489	1	13753	13753		19.362	4.1135	1		+		33610	11999	21250	21365	32358	32358					0.0803831599437217
TLAKYLMEL	9	Oxidation (M)	_TLAKYLM(Oxidation (M))EL_		TLAKYLM(1)EL		TLAKYLM(150)EL	0	0	1		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	HCT116MG_D190212_S1	1	549.2997436523438	2	549.299193	1096.58383	0.57382	0.0003152	0.12597	6.9197E-05	0.69979	0.0003844	549.2992628969581	52.649	0.3605	52.649	52.485	52.845	0					14	6	3	0	0	0	0.0039465	1	20157	20157		151.48	80.346	1	17269000			33611	3261;4328	21251	21366	32359	32359		78			0.03940420682579315
TLAKYLMEL	9	Oxidation (M)	_TLAKYLM(Oxidation (M))EL_		TLAKYLM(1)EL		TLAKYLM(150)EL	0	0	1		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2994995117188	2	549.299193	1096.58383	0.33274	0.00018277	0.25768	0.00014155	0.59042	0.00032432	549.2992042294751	52.973	0.41278	52.784	52.553	52.966	-0.18922					18	7	3	0	0	0	0.0039465	1	20364	20364		151.48	83.399	1	30442000			33612	3261;4328	21251	21366	32360	32360		78			0.03940420682579315
TLAKYLMEL	9	Unmodified	_TLAKYLMEL_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000157456|ENST00000288207|CCNB2	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	HCT116MG_D190212_S1	1	541.8034057617188	2	541.301736	1080.58892	0.5672	0.00030703	0.22761	0.0001232	0.79481	0.00043023	541.3016895007127	55.684	0.20592	55.684	55.554	55.76	0					7	3	3	0	0	0	0.0068642	1	21399	21399		121.35	62.667	1	135490000			33613	3261;4328	21251	21367	32361	32361					0.05184724545210884
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	MSMS	HCT116MG_D190212_S1	1	522.3145751953125	2	522.314023	1042.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.608	1	26.608	26.108	27.108	0								0	0	0	0.24105	1	9621	9621		44.392	12.354	1				33614	2460	21252	21368	32362	32362					0.0938912074293512
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	522.3142700195312	2	522.314023	1042.61349	0.40934	0.0002138	0.32709	0.00017085	0.73643	0.00038465	522.3141100003737	27.038	0.26431	26.686	26.554	26.818	-0.35254					8	4	3	0	0	0	0.035298	1	9828	9828		81.915	30.5	1	29108000			33615	2460	21252	21368	32363	32363					0.0938912074293512
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	522.314453125	2	522.314023	1042.61349	0.41138	0.00021487	0.44202	0.00023087	0.8534	0.00044574	522.3143117259842	26.638	0.208	26.489	26.411	26.619	-0.14924					5	3	2	0	0	0	0.10554	1	9591	9591		57.108	22.706	1	3641100			33616	2460	21252	21368	32364	32364					0.0938912074293512
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	ENST00000462297.1_1_2:74754523-74754670:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	522.314023	1042.61349	0.41855	0.00021862	-0.14946	-7.8066E-05	0.26909	0.00014055	522.3142088840435	26.545	0.15595	26.545	26.449	26.605	0	-0.028175	-0.00053177	NaN	81.915	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3843300			33617	2460	21252	21368							0.0938912074293512
TLAVPVGL	8	Unmodified	_TLAVPVGL_					0	0	0		ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	MSMS	HCT116MG_D190212_S3	3	385.24432373046875	2	385.244547	768.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.468	1	26.319	25.819	26.819	-0.14924								0	0	0	0.8837	1	9497	9497		13.508	2.3934	1				33618	6014	21253	21369	32365	32365					0.0810420284542488
TLAWGVNLP	9	Unmodified	_TLAWGVNLP_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENSG00000112249|ENST00000369162|ASCC3	ENSG00000144028|ENST00000323853|SNRNP200;ENSG00000112249|ENST00000369162|ASCC3	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	HCT116MG_D190212_S3	3	485.77020263671875	2	485.77146	969.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.88	1	27.692	27.192	28.192	-0.18847								0	0	0	0.42657	1	10067	10067		32.305	2.4649	1				33619	3846;2335	21254	21370	32366	32366					0.04238375277122941
TLCKSKGILP	10	Unmodified	_TLCKSKGILP_					0	0	0		ENST00000445747.1_1_X:118011894-118012802:-|nuORF	ENST00000445747.1_1_X:118011894-118012802:-|nuORF	ENST00000445747.1_1_X:118011894-118012802:-|nuORF	MSMS	HCT116MG_D190212_S4	4	530.3171997070312	2	530.315177	1058.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.922	1	36.537	36.037	37.037	-0.38486								0	0	0	0.92607	1	13530	13530		10.074	0	1				33620	7951	21255	21371	32367	32367					0.08883833156392029
TLCLWRWRWRW	11	Unmodified	_TLCLWRWRWRW_					0	0	0			REV__SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	REV__SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	831.7398071289062	2	831.435347	1660.85614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.358	1	41.358	40.858	41.858	0								0	0	0	0.96149	1	15571	15571		0.30703	0.30703	1		+		33621	17533	21256	21372	32368	32368					0.05214667267114237
TLCMVFMM	8	Unmodified	_TLCMVFMM_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MSMS	HCT116MG_D190212_S4	4	488.2126159667969	2	488.212163	974.409773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.716	1	58.433	57.933	58.933	-0.28305								0	0	0	0.8837	1	22076	22076		2.5775	0.51773	1		+		33622	11257	21257	21373	32369	32369					-0.07845522610386979
TLCPSAHH	8	Unmodified	_TLCPSAHH_					0	0	0		CCNJ|p.R61H|1|0.19|ENSG00000107443|chr10:96050368-96050368|G/A|missense_variant	CCNJ|p.R61H|1|0.19|ENSG00000107443|chr10:96050368-96050368|G/A|missense_variant	CCNJ|p.R61H|1|0.19|ENSG00000107443|chr10:96050368-96050368|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	433.204345703125	2	433.202887	864.391221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.731	1	29.43	28.93	29.93	-0.30095								0	0	0	0.8837	1	10902	10902		9.3474	0	1				33623	361	21258	21374	32370	32370					-0.04639856874086945
TLDAGKFQIY	10	Unmodified	_TLDAGKFQIY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	HCT116MG_D190212_S2	2	578.30615234375	2	578.305864	1154.59717	0.71831	0.0004154	-0.027044	-1.564E-05	0.69127	0.00039976	578.3057978921294	46.608	0.20539	46.497	46.369	46.574	-0.11121					8	3	3	0	0	0	0.15757	1	17775	17775		63.227	21.388	1	19444000			33624	2213	21259	21375	32371	32371					0.02605994786199517
TLDAGKFQIY	10	Unmodified	_TLDAGKFQIY_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	HCT116MG_D190212_S3	3	578.305908203125	2	578.305864	1154.59717	0.55291	0.00031975	-0.56063	-0.00032421	-0.0077169	-4.4627E-06	578.3055970584388	46.787	0.2086	46.473	46.385	46.594	-0.31405					7	3	3	0	0	0	0.2501	1	17588	17588		43.772	1.9328	1	3615400			33625	2213	21259	21375	32372	32372					0.02605994786199517
TLDAGNIKL	9	Unmodified	_TLDAGNIKL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S1	1	472.7742614746094	2	472.7742	943.533846	0.10068	4.7599E-05	-0.10855	-5.132E-05	-0.0078718	-3.7216E-06	472.77410243649905	42.821	0.20931	42.821	42.69	42.9	0					9	3	3	0	0	0	0.040027	1	16165	16165		79.596	11.516	1	32769000			33626	6078	21260	21376	32373	32373					0.059820540689429436
TLDAGNIKL	9	Unmodified	_TLDAGNIKL_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	HCT116MG_D190212_S2	2	472.7740478515625	2	472.7742	943.533846	0.41299	0.00019525	-0.19833	-9.3765E-05	0.21466	0.00010149	472.773974415214	42.785	0.25875	42.715	42.585	42.844	-0.069984					10	4	3	0	0	0	0.0067688	1	16226	16226		122.18	33.276	1	55827000			33627	6078	21260	21376	32374	32374					0.059820540689429436
TLDAVKFSQY	10	Unmodified	_TLDAVKFSQY_					0	0	0		ENST00000587044.1_1_17:41568567-41594747:+|nuORF;ENSG00000067596|ENST00000262415|DHX8	ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENST00000587044.1_1_17:41568567-41594747:+|nuORF	MSMS	HCT116MG_D190212_S2	2	586.3035278320312	2	586.303321	1170.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.047	1	41.978	41.478	42.478	-0.068199								0	0	0	0.71095	1	15905	15905		37.075	8.5801	1				33628	1188	21261	21377	32375	32375					0.01361690923590686
TLDDESLKY	9	Unmodified	_TLDDESLKY_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MSMS	HCT116MG_D190212_S2	2	1083.521240234375	1	1083.52045	1082.51317	0.54815	0.00059393	0.2742	0.0002971	0.82235	0.00089103	1083.5206410867422	35.626	0.20582	35.483	35.386	35.592	-0.14245					5	3	2	0	0	0	0.0034381	1	13324	13324		160.69	57.336	1	15442000			33629	4024	21262	21378	32376	32376					-0.02478581101377131
TLDDESLKY	9	Unmodified	_TLDDESLKY_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MSMS	HCT116MG_D190212_S2	2	542.2639770507812	2	542.263862	1082.51317	0.55636	0.00030169	-0.16983	-9.2092E-05	0.38653	0.0002096	542.2636247624506	35.634	0.41117	35.491	35.335	35.746	-0.14245					15	7	3	0	0	0	0.0201	1	13332	13332		96.367	37.688	1	83169000			33630	4024	21262	21378	32377	32377					-0.02478581101377131
TLDDESLKY	9	Unmodified	_TLDDESLKY_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MSMS	HCT116MG_D190212_S3	3	542.2969970703125	2	542.263862	1082.51317	0.5324	0.0002887	-0.11902	-6.454E-05	0.41338	0.00022416	542.2637670845353	35.848	0.30978	35.548	35.42	35.729	-0.30042					16	6	4	0	0	0	0.0050238	2	13205	13205;13270		137.42	69.343	1	30115000			33631	4024	21262	21378	32378;32379	32378					-0.02478581101377131
TLDDESLKY	9	Unmodified	_TLDDESLKY_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	542.263862	1082.51317	0.63981	0.00034695	0.056042	3.0389E-05	0.69585	0.00037734	542.2636199997769	35.603	0.20628	35.603	35.475	35.682	0	0.055845	0.00019837	NaN	137.42	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16605000			33632	4024	21262	21378							-0.02478581101377131
TLDDKKVYL	9	Unmodified	_TLDDKKVYL_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	HCT116MG_D190212_S1	1	547.8080444335938	2	547.808239	1093.60193	0.5524	0.00030261	-0.3569	-0.00019551	0.19551	0.0001071	547.8080036888443	34.363	0.36465	34.363	34.181	34.545	0					15	6	4	0	0	0	0.0082095	1	12750	12750		117.76	48.656	1	33925000			33633	2895	21263	21379	32380	32380					0.058868789289590495
TLDDKKVYL	9	Unmodified	_TLDDKKVYL_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	HCT116MG_D190212_S2	2	547.8091430664062	2	547.808239	1093.60193	0.70221	0.00038468	0.28556	0.00015643	0.98777	0.00054111	547.8083091885026	34.51	0.41338	34.335	34.175	34.589	-0.17512					15	7	3	0	0	0	0.0046822	2	12841	12841;12883		140.63	37.28	1	90821000			33634	2895	21263	21379	32381;32382	32381					0.058868789289590495
TLDDKKVYL	9	Unmodified	_TLDDKKVYL_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	HCT116MG_D190212_S2	2	365.54132080078125	3	365.541252	1093.60193	0.0603	2.2042E-05	0.30711	0.00011226	0.36741	0.00013431	365.54124901609464	34.532	0.30949	34.356	34.175	34.485	-0.17512					11	5	3	0	0	0	0.26536	1	12878	12878		26.021	3.3626	1	30648000			33635	2895	21263	21379	32383	32383					0.058868789289590495
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	HCT116MG_D190212_S2	2	930.5148315429688	1	930.514239	929.506963	0.98762	0.000919	-0.18062	-0.00016807	0.807	0.00075093	930.5139663203079	56.627	0.21278	56.445	56.312	56.524	-0.18261					7	3	3	0	0	0	0.043314	1	21877	21877		77.984	10.64	1	54242000			33636	3147	21264	21380	32384	32384					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	HCT116MG_D190212_S3	3	931.489013671875	1	930.514239	929.506963	1.0558	0.0009824	0.02212	2.0583E-05	1.0779	0.001003	930.5141170645666	56.721	0.20882	56.438	56.359	56.568	-0.28367					5	3	2	0	0	0	0.088989	1	21537	21537		60.39	15.983	1	2368500			33637	3147	21264	21380	32385	32385					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	930.514239	929.506963	0.90558	0.00084266	-0.37356	-0.0003476	0.53202	0.00049505	930.5142479037822	56.505	0.15413	56.505	56.377	56.531	0	0.042687	-0.0002195	NaN	77.984	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15421000			33638	3147	21264	21380							0.03938945457775844
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;ENSG00000124228|ENST00000618172|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	HCT116MG_D190212_S1	1	537.8058471679688	2	537.805697	1073.59684	0.73351	0.00039449	-0.13972	-7.5144E-05	0.59379	0.00031934	537.8056537433424	28.67	0.26461	28.67	28.482	28.746	0					12	4	4	0	0	0	0.014973	1	10455	10455		101.54	24.719	1	11663000			33639	9444	21265	21381	32386	32386					0.06298575066307421
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;ENSG00000124228|ENST00000618172|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	HCT116MG_D190212_S2	2	537.8059692382812	2	537.805697	1073.59684	0.44006	0.00023667	0.42371	0.00022787	0.86377	0.00046454	537.805779015371	29	0.30764	28.683	28.504	28.812	-0.31613					7	5	2	0	0	0	0.39921	1	10650	10650		22.658	1.1211	1	64428000			33640	9444	21265	21381	32387	32387					0.06298575066307421
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;ENSG00000124228|ENST00000618172|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	HCT116MG_D190212_S3	3	537.8056640625	2	537.805697	1073.59684	0.56971	0.00030639	-0.017356	-9.3344E-06	0.55235	0.00029706	537.8055177329937	29.034	0.20833	28.812	28.681	28.89	-0.22195					8	3	3	0	0	0	0.049866	1	10534	10534		74.772	19.537	1	13924000			33641	9444	21265	21381	32388	32388					0.06298575066307421
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;ENSG00000124228|ENST00000618172|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	537.805697	1073.59684	0.44006	0.00023667	0.42371	0.00022787	0.86377	0.00046454	537.805779015371	29	0.30764	28.683	28.504	28.812	-0.31613	-0.038419	0.0004951	NaN	101.54	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64428000			33642	9444	21265	21381							0.06298575066307421
TLDENHSIP	9	Unmodified	_TLDENHSIP_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2490844726562	2	513.248546	1024.48254	0.31077	0.0001595	2.8512	0.0014634	3.162	0.0016229	513.2496982128729	31.193	0.41349	30.926	30.663	31.077	-0.26704					18	7	3	0	0	0	0.1535	1	11511	11511		47.594	8.9796	1	9946700			33643	9447	21266	21382	32389	32389					-0.028723146957418066
TLDENPGVRY	10	Unmodified	_TLDENPGVRY_					0	0	0		STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	582.28857421875	2	582.288202	1162.56185	0.66303	0.00038607	0.092218	5.3698E-05	0.75525	0.00043977	582.2882974473341	31.401	0.31214	31.401	31.232	31.544	0					8	5	2	0	0	0	0.019418	1	11563	11563		121.53	71.601	1	11652000			33644	2511	21267	21383	32390	32390					-0.01292667741608966
TLDENPGVRY	10	Unmodified	_TLDENPGVRY_					0	0	0		STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	582.2886962890625	2	582.288202	1162.56185	0.7186	0.00041843	0.074931	4.3631E-05	0.79353	0.00046206	582.2881757901338	31.577	0.36303	31.328	31.198	31.561	-0.24883					13	6	3	0	0	0	0.0084034	1	11654	11654		157.8	95.223	1	65965000			33645	2511	21267	21383	32391	32391					-0.01292667741608966
TLDIRLKKL	9	Unmodified	_TLDIRLKKL_					0	0	0		ENSG00000124831|ENST00000308482|LRRFIP1;ENST00000483443.1_1_2:238664770-238678725:+|nuORF	ENSG00000124831|ENST00000308482|LRRFIP1	ENSG00000124831|ENST00000308482|LRRFIP1	MSMS	HCT116MG_D190212_S1	1	549.9129638671875	2	550.363516	1098.71248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.943	1	36.943	36.443	37.443	0								0	0	0	0.76818	1	13787	13787		7.2892	0	1				33646	2868	21268	21384	32392	32392					0.16707143707867544
TLDKRIDEP	9	Unmodified	_TLDKRIDEP_					0	0	0			REV__KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant	REV__KIAA0319|p.S314Lfs*19|1|0.17|ENSG00000137261|chr6:24588648-24588648|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	544.2488403320312	2	543.793121	1085.57169	0.55213	0.00030025	0.011318	6.1548E-06	0.56345	0.0003064	543.793093473242	36.702	0.31043	36.587	36.395	36.705	-0.11478					11	5	3	0	0	0	0.22393	1	13680	13680		13.906	0	1	22798000	+		33647	12168	21269	21385	32393	32393					0.032325202637593975
TLDLNTLPY	9	Unmodified	_TLDLNTLPY_					0	0	0			REV__ENSG00000170236|ENST00000532404|USP50	REV__ENSG00000170236|ENST00000532404|USP50	MULTI-MSMS	HCT116MG_D190212_S2	2	1049.552001953125	1	1049.55135	1048.54408	0.77297	0.00081127	0.21809	0.00022889	0.99105	0.0010402	1049.5511273070606	56.787	0.37183	56.608	56.315	56.687	-0.17904					11	6	3	0	0	0	0.23138	1	21941	21941		37.974	0	1	15851000	+		33648	13284	21270	21386	32394	32394					0.02174617003538515
TLDNRTIVI	9	Unmodified	_TLDNRTIVI_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	HCT116MG_D190212_S2	2	522.8060302734375	2	522.806031	1043.59751	0.42861	0.00022408	-0.57945	-0.00030294	-0.15084	-7.8858E-05	522.8056788648161	41.903	0.25963	41.834	41.705	41.964	-0.068199					7	4	2	0	0	0	0.066823	1	15862	15862		66.457	4.8548	1	24814000			33649	1464	21271	21387	32395	32395					0.07745414506052839
TLDNRTIVI	9	Unmodified	_TLDNRTIVI_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	522.806031	1043.59751	0.49643	0.00025954	-0.5696	-0.00029779	-0.073171	-3.8254E-05	522.8055988586034	41.94	0.15665	41.94	41.81	41.966	0	0.052875	9.3985E-06	NaN	66.457	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3873200			33650	1464	21271	21387							0.07745414506052839
TLDPMAIFF	9	Unmodified	_TLDPMAIFF_					0	0	0		ACSM1|p.V222A|1|0.09|ENSG00000166743|chr16:20671618-20671618|A/G|missense_variant	ACSM1|p.V222A|1|0.09|ENSG00000166743|chr16:20671618-20671618|A/G|missense_variant	ACSM1|p.V222A|1|0.09|ENSG00000166743|chr16:20671618-20671618|A/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	527.9573364257812	2	527.767529	1053.5205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.61	1	51.61	51.11	52.11	0								0	0	0	0.53872	1	19723	19723		26.884	5.3467	1				33651	29	21272	21388	32396	32396					-0.004115200346632264
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	577.7901000976562	2	577.790047	1153.56554	0.36044	0.00020826	0.66211	0.00038256	1.0226	0.00059082	577.7902273786103	54.056	0.25725	53.867	53.739	53.996	-0.1894					8	4	2	0	0	0	0.13161	1	20830	20830		67.838	16.208	1	20999000			33652	4384	21273	21389	32397	32397					-0.0050999796776523
TLDQSLRY	8	Unmodified	_TLDQSLRY_					0	0	0		nc|ENSG00000156011|Q9NYI0-3|PSD3;PSD3|p.D956Rfs*11|1|0.17|ENSG00000156011|chr8:18556274-18556275|-/G|frameshift_variant;PSD3|p.D956Tfs*14|1|0.29|ENSG00000156011|chr8:18556275-18556275|G/-|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;ENST00000519633.1_1_8:18662024-18666359:-|nuORF;ENST00000518963.5_1_8:18656789-18662365:-|nuORF;ENST00000518303.5_1_8:18658714-18662398:-|nuORF;ENST00000519653.5_1_8:18644335-18666359:-|nuORF;PSD3|p.V655Efs*3|1|0.1|ENSG00000156011|chr8:18801329-18801330|-/CT|frameshift_variant;PSD3|p.L776Wfs*44|1|0.35|ENSG00000156011|chr8:18632699-18632699|A/-|frameshift_variant	nc|ENSG00000156011|Q9NYI0-3|PSD3	nc|ENSG00000156011|Q9NYI0-3|PSD3	MSMS	HCT116MG_D190212_S3	3	498.2619934082031	2	498.261456	994.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.672	1	35.373	34.873	35.873	-0.29922								0	0	0	0.68119	1	13156	13156		32.117	3.6301	1				33653	4271	21274	21390	32398	32398					0.010885795465128467
TLDQTLLEL	9	Unmodified	_TLDQTLLEL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENST00000378300.9_1_9:35682080-35682179:-|nuORF	nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	HCT116MG_D190212_S2	2	523.2923583984375	2	523.292422	1044.57029	0.45467	0.00023792	0.0071537	3.7435E-06	0.46182	0.00024167	523.292374644297	57.36	0.20767	57.185	57.055	57.263	-0.17494					8	3	3	0	0	0	0.0094709	1	22159	22159		114.65	29.377	1	126780000		+	33654	9605	21275	21391	32399	32399					0.04978886175013031
TLDQTLLEL	9	Unmodified	_TLDQTLLEL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENST00000378300.9_1_9:35682080-35682179:-|nuORF	nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	HCT116MG_D190212_S2	2	1045.578125	1	1045.57757	1044.57029	0.80705	0.00084383	-0.1667	-0.00017429	0.64035	0.00066954	1045.5772799433548	57.36	0.20767	57.185	57.055	57.263	-0.17494					5	3	2	0	0	0	0.069315	1	22169	22169		65.235	15.302	1	50969000		+	33655	9605	21275	21391	32400	32400					0.04978886175013031
TLDRQLNHY	9	Unmodified	_TLDRQLNHY_					0	0	0		ENST00000523824.5_1_8:126104167-126163564:+|nuORF;ENSG00000156831|ENST00000287437|NSMCE2	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	580.2965698242188	2	580.296362	1158.57817	0.61654	0.00035778	0.64262	0.00037291	1.2592	0.00073069	580.2965714602971	26.214	0.31292	26.214	26.084	26.397	0					11	5	3	0	0	0	0.062126	1	9485	9485		83.429	46.923	1	10134000			33656	4300	21276	21392	32401	32401					0.005224582151413415
TLDRQLNHY	9	Unmodified	_TLDRQLNHY_					0	0	0		ENST00000523824.5_1_8:126104167-126163564:+|nuORF;ENSG00000156831|ENST00000287437|NSMCE2	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	387.199951171875	3	387.2	1158.57817	-0.013711	-5.309E-06	-0.026544	-1.0278E-05	-0.040255	-1.5587E-05	387.1999537428139	26.214	0.26082	26.214	26.084	26.345	0					7	4	2	0	0	0	0.47413	1	9492	9492		18.373	2.224	1	5865100			33657	4300	21276	21392	32402	32402					0.005224582151413415
TLDRQLNHY	9	Unmodified	_TLDRQLNHY_					0	0	0		ENST00000523824.5_1_8:126104167-126163564:+|nuORF;ENSG00000156831|ENST00000287437|NSMCE2	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	ENST00000523824.5_1_8:126104167-126163564:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	387.1997985839844	3	387.2	1158.57817	-0.064703	-2.5053E-05	-0.029632	-1.1474E-05	-0.094335	-3.6527E-05	387.19988053504994	26.619	0.25948	26.258	26.128	26.387	-0.36164					9	4	3	0	0	0	0.23993	1	9663	9663		37.075	15.484	1	16235000			33658	4300	21276	21392	32403	32403					0.005224582151413415
TLDSCTDP	8	Unmodified	_TLDSCTDP_					0	0	0			REV__TECTA|p.A619V|1|0.2|ENSG00000109927|chr11:121127833-121127833|C/T|missense_variant	REV__TECTA|p.A619V|1|0.2|ENSG00000109927|chr11:121127833-121127833|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	426.1758728027344	2	426.176201	850.337848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.028	1	60.88	60.38	61.38	-0.14852								0	0	0	0.8837	1	23631	23631		0.79363	0	1		+		33659	11386	21277	21393	32404	32404					-0.09330699167264811
TLDTRKKV	8	Unmodified	_TLDTRKKV_					0	0	0			REV__nc|ENSG00000132437|P20711-4|DDC	REV__nc|ENSG00000132437|P20711-4|DDC	MSMS	HCT116MG_D190212_S4	4	480.79437255859375	2	480.795466	959.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.42	1	41.042	40.542	41.542	-0.37732								0	0	0	0.65638	1	15217	15217		34.102	14.663	1		+		33660	11990	21278	21394	32405	32405					0.09497449197192509
TLEAGCLLPPP	11	Unmodified	_TLEAGCLLPPP_					0	0	0		ENST00000288699.10_1_2:27171266-27171365:+|nuORF	ENST00000288699.10_1_2:27171266-27171365:+|nuORF	ENST00000288699.10_1_2:27171266-27171365:+|nuORF	MSMS	HCT116MG_D190212_S3	3	555.79638671875	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.331	1	44.024	43.524	44.524	-0.30759								0	0	0	0.93552	1	16569	16569		13.906	0.39817	1				33661	6956	21279	21395	32406	32406					0.028675365398157737
TLEEEFRESLI	11	Unmodified	_TLEEEFRESLI_					0	0	0			REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-MSMS	HCT116MG_D190212_S1	1	683.3484497070312	2	683.348457	1364.68236	0.75841	0.00051826	-0.056862	-3.8857E-05	0.70155	0.0004794	683.3480177697769	31.727	0.26075	31.727	31.596	31.857	0					8	4	3	0	0	0	0.54124	1	11709	11709		41.956	0	1	15003000	+		33662	13522	21280	21396	32407	32407					0.014606954613327616
TLEEEFRESLI	11	Unmodified	_TLEEEFRESLI_					0	0	0			REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	683.348457	1364.68236	0.75841	0.00051826	-0.056862	-3.8857E-05	0.70155	0.0004794	683.3480177697769	31.727	0.26075	31.727	31.596	31.857	0	0.0086277	-6.7414E-05	NaN	41.956	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15003000	+		33663	13522	21280	21396							0.014606954613327616
TLEERIEFSEL	11	Unmodified	_TLEERIEFSEL_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	683.348388671875	2	683.348457	1364.68236	0.57834	0.00039521	0.020467	1.3986E-05	0.59881	0.0004092	683.8499588945352	31.939	0.25817	31.709	31.58	31.838	-0.23009					10	4	3	0	0	0	0.54124	1	11804	11804		41.956	0	1	65847000			33664	1707	21281	21397	32408	32408					0.01460695461355499
TLELFWKKMLW	11	Unmodified	_TLELFWKKMLW_					0	0	0		ENST00000338446.8_1_3:138341234-138351784:+|nuORF	ENST00000338446.8_1_3:138341234-138351784:+|nuORF	ENST00000338446.8_1_3:138341234-138351784:+|nuORF	MSMS	HCT116MG_D190212_S3	3	747.9127197265625	2	747.912516	1493.81048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.092	1	44.783	44.283	45.283	-0.30927								0	0	0	0.95954	1	16873	16873		1.3295	0	1				33665	7200	21282	21398	32409	32409					0.08332584241520635
TLFHRIYNQ	9	Unmodified	_TLFHRIYNQ_					0	0	0			REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|78|1|anti-sense	REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|78|1|anti-sense	MSMS	HCT116MG_D190212_S4	4	596.009033203125	2	596.317097	1190.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.914	1	52.574	52.074	53.074	-0.34023								0	0	0	0.768	1	19740	19740		7.9102	0	1		+		33666	16950	21283	21399	32410	32410					0.03195638974466419
TLFHTMDTLY	10	Unmodified	_TLFHTMDTLY_					0	0	0		MTA3|p.A237T|2|0.39|ENSG00000057935|chr2:42682407-42682407|G/A|missense_variant	MTA3|p.A237T|2|0.39|ENSG00000057935|chr2:42682407-42682407|G/A|missense_variant	MTA3|p.A237T|2|0.39|ENSG00000057935|chr2:42682407-42682407|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	621.76513671875	2	621.297181	1240.57981	0.655	0.00040695	1.0987	0.00068261	1.7537	0.0010896	621.2968802009299	39.122	0.20597	39.045	38.916	39.122	-0.077835					5	3	2	0	0	0	0.56527	1	14726	14726		30.637	0	1	10209000			33667	9345	21284	21400	32411	32411					-0.030856688111043695
TLFINLTKID	10	Unmodified	_TLFINLTKID_					0	0	0			REV__ENSG00000119638|ENST00000238616|NEK9	REV__ENSG00000119638|ENST00000238616|NEK9	MSMS	HCT116MG_D190212_S2	2	589.3221435546875	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.621	1	56.438	55.938	56.938	-0.18261								0	0	0	0.92917	1	21850	21850		9.3831	2.0939	1		+		33668	11661	21285	21401	32412	32412					0.09415427371413898
TLFKEKNKI	9	Unmodified	_TLFKEKNKI_					0	0	0			REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	REV__tr|U7SQY6|U7SQY6_FUSNUDNAmethylaseadenine-specificdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01632PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	374.2286682128906	3	374.229008	1119.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.564	1	38.183	37.683	38.683	-0.38163								0	0	0	0.768	1	14138	14138		4.897	0	1		+		33669	17759	21286	21402	32413	32413					0.11014864436833705
TLFLLKNGRL	10	Unmodified	_TLFLLKNGRL_					0	0	0			REV__TLR8|p.N912Tfs*6|1|0.39|ENSG00000101916|chrX:12921771-12921771|A/-|frameshift_variant	REV__TLR8|p.N912Tfs*6|1|0.39|ENSG00000101916|chrX:12921771-12921771|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	587.8699951171875	2	587.868966	1173.72338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.784	1	33.784	33.284	34.284	0								0	0	0	0.92607	1	12515	12515		10.074	3.8681	1		+		33670	11138	21287	21403	32414	32414					0.14346546082128953
TLFMSNVRF	9	Unmodified	_TLFMSNVRF_					0	0	0			REV__POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant	REV__POLR1B|p.K311Nfs*26|1|0.28|ENSG00000125630|chr2:112551942-112551942|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	557.787841796875	2	557.789327	1113.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.095	1	56.916	56.416	57.416	-0.17904								0	0	0	0.76575	1	22040	22040		15.847	2.3393	1		+		33671	17431	21288	21404	32415	32415					0.01186089462498785
TLFNVIKSV	9	Unmodified	_TLFNVIKSV_					0	0	0		ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	ITPR3|p.R2604Gfs*30|1|0.27|ENSG00000096433|chr6:33694944-33694944|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	510.8083801269531	2	510.808042	1019.60153	0.24821	0.00012679	-0.050266	-2.5676E-05	0.19794	0.00010111	510.80797125840115	54.056	0.20567	53.867	53.739	53.945	-0.1894					7	3	3	0	0	0	0.0052024	1	20811	20811		135.86	55.187	1	33659000			33672	1619	21289	21405	32416	32416					0.09251503999769284
TLFPSKIGV	9	Unmodified	_TLFPSKIGV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	481.2891540527344	2	481.289485	960.564418	0.001311	6.3099E-07	0.19166	9.2246E-05	0.19298	9.2877E-05	481.28947092643716	48.022	0.25907	48.022	47.893	48.152	0					7	4	2	0	0	0	0.22946	1	18287	18287		38.176	15.439	1	13521000			33673	2438	21290	21406	32417	32417					0.08255832453994572
TLFPTIFVF	9	Unmodified	_TLFPTIFVF_					0	0	0			REV__ENST00000589515.2_1_19:2343134-2351610:+|nuORF	REV__ENST00000589515.2_1_19:2343134-2351610:+|nuORF	MSMS	HCT116MG_D190212_S1	1	362.20697021484375	3	362.207433	1083.60047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.904	1	37.904	37.404	38.404	0								0	0	0	0.76793	1	14175	14175		8.1555	0	1		+		33674	10473	21291	21407	32418	32418					0.06201289630848805
TLFTKELVL	9	Unmodified	_TLFTKELVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;GAS2L3-SND1|1|fusion;ENST00000470723.5_1_7:127589266-127648128:+|nuORF;ENST00000467238.1_1_7:127631037-127637644:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	HCT116MG_D190212_S2	2	532.3234252929688	2	532.323525	1062.6325	0.44147	0.000235	-0.81592	-0.00043433	-0.37445	-0.00019933	532.3228636045318	54.876	0.30697	54.688	54.56	54.867	-0.18797					11	5	3	0	0	0	0.29167	1	21165	21165		40.239	4.1122	1	50488000			33675	6123	21292	21408	32419	32419					0.10368657313983931
TLGATWAGQP	10	Unmodified	_TLGATWAGQP_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2559814453125	2	501.256174	1000.49779	0.21004	0.00010528	-0.17278	-8.6605E-05	0.037265	1.868E-05	501.2561328773021	32.229	0.78198	32.229	31.857	32.639	0					34	14	3	0	0	0	0.28726	1	11816	11816		51.63	0.77478	1	28453000	+		33676	14573	21293	21409	32420	32420					-0.0024340310790194053
TLGATWAGQP	10	Unmodified	_TLGATWAGQP_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1001.5070190429688	1	1001.50507	1000.49779	0.55771	0.00055855	0.62794	0.00062889	1.1857	0.0011874	1001.5050737559012	32.248	0.41659	32.248	31.961	32.378	0					10	7	2	0	0	0	0.26262	1	11929	11929		53.833	7.8118	1	4151500	+		33677	14573	21293	21409	32421	32421					-0.0024340310790194053
TLGATWAGQP	10	Unmodified	_TLGATWAGQP_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2560729980469	2	501.256174	1000.49779	0.33781	0.00016933	-0.30235	-0.00015156	0.035451	1.777E-05	501.256141571646	32.527	0.78085	32.296	31.787	32.567	-0.23009					50	14	5	0	0	0	0.28726	1	11936	11936		51.63	0.77478	1	192140000	+		33678	14573	21293	21409	32422	32422					-0.0024340310790194053
TLGATWAGQP	10	Unmodified	_TLGATWAGQP_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1001.50634765625	1	1001.50507	1000.49779	0.41915	0.00041978	0.33832	0.00033883	0.75746	0.0007586	1001.5051899473235	32.495	0.62469	32.265	31.89	32.515	-0.23009					19	11	2	0	0	0	0.26262	1	12000	12000		53.833	8.1332	1	37965000	+		33679	14573	21293	21409	32423	32423					-0.0024340310790194053
TLGATWAGQP	10	Unmodified	_TLGATWAGQP_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1001.5056762695312	1	1001.50507	1000.49779	0.6768	0.00067782	-0.13885	-0.00013906	0.53795	0.00053876	1001.5047451552414	32.646	0.36452	32.361	32.144	32.508	-0.28511					10	6	2	0	0	0	0.26262	1	11953	11953		53.833	8.1332	1	3145900	+		33680	14573	21293	21409	32424	32424					-0.0024340310790194053
TLGATWAGQP	10	Unmodified	_TLGATWAGQP_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	501.2562255859375	2	501.256174	1000.49779	0.39995	0.00020048	-0.16782	-8.4119E-05	0.23213	0.00011636	501.25604309866316	32.754	0.62286	32.375	31.949	32.572	-0.37924					32	11	4	0	0	0	0.28726	1	11887	11887		51.63	9.5352	1	22665000	+		33681	14573	21293	21409	32425	32425					-0.0024340310790194053
TLGATWAGQP	10	Unmodified	_TLGATWAGQP_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1001.50507	1000.49779	0.55771	0.00055855	0.62794	0.00062889	1.1857	0.0011874	1001.5050737559012	32.248	0.41659	32.248	31.961	32.378	0	-0.043565	0.00041354	NaN	53.833	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4151500	+		33682	14573	21293	21409							-0.0024340310790194053
TLGATWAGQP	10	Unmodified	_TLGATWAGQP_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	1001.50507	1000.49779	0.41915	0.00041978	0.33832	0.00033883	0.75746	0.0007586	1001.5051899473235	32.495	0.62469	32.265	31.89	32.515	-0.23009	-0.026124	0.00012348	NaN	53.833	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37965000	+		33683	14573	21293	21409							-0.0024340310790194053
TLGATWAGQP	10	Unmodified	_TLGATWAGQP_					0	0	0			REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	REV__ENST00000246117.8_1_19:3208068-3208281:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1001.50507	1000.49779	0.6768	0.00067782	-0.13885	-0.00013906	0.53795	0.00053876	1001.5047451552414	32.646	0.36452	32.361	32.144	32.508	-0.28511	0.069689	-0.0003544	NaN	53.833	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3145900	+		33684	14573	21293	21409							-0.0024340310790194053
TLGAVPIFFL	10	Unmodified	_TLGAVPIFFL_					0	0	0			REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MSMS	HCT116MG_D190212_S4	4	539.318603515625	2	539.320786	1076.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.897	1	31.522	31.022	32.022	-0.37529								0	0	0	0.90892	1	11595	11595		13.906	0.86358	1		+		33685	12727	21294	21410	32426	32426					0.09176978522191348
TLGDPEVAPP	10	Unmodified	_TLGDPEVAPP_					0	0	0		ENSG00000165506|ENST00000298292|DNAAF2;nc|ENSG00000165506|Q9NVR5-2|DNAAF2	ENSG00000165506|ENST00000298292|DNAAF2	ENSG00000165506|ENST00000298292|DNAAF2	MSMS	HCT116MG_D190212_S3	3	498.24212646484375	2	498.25584	994.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.726	1	26.577	26.077	27.077	-0.14924								0	0	0	0.78574	1	9601	9601		30.637	10.183	1				33686	4779	21295	21411	32427	32427					-0.0003424254762194323
TLGNIHIIA	9	Unmodified	_TLGNIHIIA_					0	0	0			REV__tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	REV__tr|U7T4M0|U7T4M0_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00363PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	476.28509521484375	2	476.284734	950.554916	0.03397	1.6179E-05	0.028548	1.3597E-05	0.062518	2.9776E-05	476.2847739677049	29.977	0.30969	29.693	29.564	29.873	-0.28453					6	5	2	0	0	0	0.43775	1	11037	11037		20.454	0	1	9304500	+		33687	17969	21296	21412	32428	32428					0.07766064168470166
TLGNLLPGA	9	Unmodified	_TLGNLLPGA_					0	0	0		ENSG00000167302|ENST00000637944|TEPSIN;nc|ENSG00000167302|Q96N21-2|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	ENSG00000167302|ENST00000637944|TEPSIN	MSMS	HCT116MG_D190212_S4	4	428.2489929199219	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.531	1	27.21	26.71	27.71	-0.32157								0	0	0	0.76669	1	9860	9860		12.532	3.1841	1				33688	4913	21297	21413	32429	32429					0.053103998687561216
TLGNVLVTV	9	Unmodified	_TLGNVLVTV_					0	0	0		ENST00000511971.5_1_4:56749994-56766742:+|nuORF;EXOC1|p.E754Kfs*18|1|0.25|ENSG00000090989|chr4:55899799-55899799|A/-|frameshift_variant;EXOC1|p.K777Nfs*2|1|0.37|ENSG00000090989|chr4:55899874-55899874|A/-|frameshift_variant;EXOC1|p.G824Vfs*2|5|0.15|ENSG00000090989|chr4:55902469-55902469|A/-|frameshift_variant;nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1	REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	HCT116MG_D190212_S2	2	915.5523071289062	1	915.550959	914.543683	0.54622	0.00050009	-0.056394	-5.1631E-05	0.48983	0.00044846	915.5509455985689	53.453	0.51483	53.263	53.069	53.584	-0.1894					15	9	2	0	0	0	0.0077497	1	20559	20559		118.89	19.096	1	51328000	+		33689	13325	21298	21414	32430	32430					0.08299242074349422
TLGQIWDV	8	Unmodified	_TLGQIWDV_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	931.4889526367188	1	931.488359	930.481082	0.9505	0.00088538	-0.14997	-0.00013969	0.80053	0.00074568	931.4881012576221	56.52	0.21037	56.338	56.207	56.418	-0.18261					7	3	3	0	0	0	0.030564	1	21813	21813		144.35	72.428	1	60773000			33690	741	21299	21415	32431	32431					0.013060960061466176
TLGQIWDV	8	Unmodified	_TLGQIWDV_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant;DYNC1H1|p.G1902Vfs*27|2|0.27|ENSG00000197102|chr14:102006154-102006154|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		1	931.488359	930.481082	1.0017	0.00093308	-0.15271	-0.00014225	0.849	0.00079083	931.488164862595	56.617	0.15709	56.333	56.202	56.359	-0.28367	-0.0021944	-2.3082E-06	NaN	144.35	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1115800			33691	741	21299	21415							0.013060960061466176
TLGTLQPPD	9	Unmodified	_TLGTLQPPD_					0	0	0		ENST00000215906.5_1_22:26839610-26839709:+|nuORF	ENST00000215906.5_1_22:26839610-26839709:+|nuORF	ENST00000215906.5_1_22:26839610-26839709:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	941.4935913085938	1	941.493838	940.486562	0.66698	0.00062796	-1.0219	-0.00096212	-0.35494	-0.00033417	941.4929142603593	45.505	0.30901	45.132	44.936	45.245	-0.37266					8	5	2	0	0	0	0.24973	1	16787	16787		36.044	15.591	1	6521800			33692	6731	21300	21416	32432	32432					0.013937747979525739
TLGTLQPPD	9	Unmodified	_TLGTLQPPD_					0	0	0		ENST00000215906.5_1_22:26839610-26839709:+|nuORF	ENST00000215906.5_1_22:26839610-26839709:+|nuORF	ENST00000215906.5_1_22:26839610-26839709:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	941.493838	940.486562	0.75713	0.00071284	-1.6511	-0.0015545	-0.89396	-0.00084166	941.492398528256	45.115	0.31419	45.022	44.839	45.153	-0.092472	-0.052482	-0.00027666	NaN	36.044	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18636000			33693	6731	21300	21416							0.013937747979525739
TLGTLQPPD	9	Unmodified	_TLGTLQPPD_					0	0	0		ENST00000215906.5_1_22:26839610-26839709:+|nuORF	ENST00000215906.5_1_22:26839610-26839709:+|nuORF	ENST00000215906.5_1_22:26839610-26839709:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	941.493838	940.486562	0.60742	0.00057189	-1.3474	-0.0012686	-0.74	-0.0006967	941.4924607840221	45.381	0.36544	45.07	44.887	45.253	-0.31094	-0.0050262	9.248E-06	NaN	36.044	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14216000			33694	6731	21300	21416							0.013937747979525739
TLGVDLVALA	10	Unmodified	_TLGVDLVALA_					0	0	0		CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	CAD|p.N1541Mfs*15|1|0.33|ENSG00000084774|chr2:27237773-27237773|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	486.255859375	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.885	1	26.721	26.221	27.221	-0.16399								0	0	0	0.90023	1	9665	9665		15.847	0	1				33695	312	21301	21417	32433	32433					0.08343511245800528
TLGVNTGK	8	Unmodified	_TLGVNTGK_					0	0	0		tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	tr|U7T735|U7T735_FUSNUPhageterminaselargesubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00101PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	395.22601318359375	2	395.226885	788.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.593	1	46.593	46.093	47.093	0								0	0	0	0.8837	1	17682	17682		2.3027	0	1				33696	18651	21302	21418	32434	32434					0.03653540317623083
TLHEILNEV	9	Unmodified	_TLHEILNEV_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2;ENST00000464846.5_1_2:157435526-157439427:+|nuORF	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	HCT116MG_D190212_S1	1	534.8994140625	2	534.290214	1066.56587	0.49355	0.0002637	0.52555	0.00028079	1.0191	0.0005445	534.2904532473345	45.949	0.20886	45.949	45.818	46.027	0					5	3	2	0	0	0	0.0094709	2	17430	17430;17449		114.65	63.019	1	11288000			33697	2447	21303	21419	32435;32436	32435					0.03525421752101465
TLHEILNEV	9	Unmodified	_TLHEILNEV_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2;ENST00000464846.5_1_2:157435526-157439427:+|nuORF	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2905883789062	2	534.290214	1066.56587	0.46871	0.00025043	0.14614	7.8082E-05	0.61485	0.00032851	534.2902074308333	45.977	0.30781	45.876	45.71	46.017	-0.10139					8	5	2	0	0	0	0.049545	1	17511	17511		74.929	39.997	1	22170000			33698	2447	21303	21419	32437	32437					0.03525421752101465
TLHFPRLRILW	11	Unmodified	_TLHFPRLRILW_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MSMS	HCT116MG_D190212_S1	1	726.4376220703125	2	726.435338	1450.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.756	1	40.756	40.256	41.256	0								0	0	0	0.95954	1	15328	15328		1.3295	0	1				33699	5387	21304	21420	32438	32438					0.14872990538788144
TLHHKLKF	8	Unmodified	_TLHHKLKF_					0	0	0			REV__ENSG00000213588|ENST00000395064|ZBTB9	REV__ENSG00000213588|ENST00000395064|ZBTB9	MSMS	HCT116MG_D190212_S3	3	512.3079833984375	2	512.308544	1022.60253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.89	1	48.574	48.074	49.074	-0.31596								0	0	0	0.8837	1	18399	18399		9.3474	0.75416	1		+		33700	14256	21305	21421	32439	32439					0.09213763159323207
TLHHLRKLFV	10	Unmodified	_TLHHLRKLFV_					0	0	0		KIF5A|p.N796H|1|0.34|ENSG00000155980|chr12:57578033-57578033|A/C|missense_variant	KIF5A|p.N796H|1|0.34|ENSG00000155980|chr12:57578033-57578033|A/C|missense_variant	KIF5A|p.N796H|1|0.34|ENSG00000155980|chr12:57578033-57578033|A/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	632.3866577148438	2	632.387857	1262.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.429	1	52.429	51.929	52.929	0								0	0	0	0.95351	1	20053	20053		3.9444	0.66309	1				33701	9268	21306	21422	32440	32440					0.1402905706756883
TLHIMRRTKEY	11	Unmodified	_TLHIMRRTKEY_					0	0	0		WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	WDR44|p.N542Mfs*11|2|0.39|ENSG00000131725|chrX:118409575-118409575|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	724.3972778320312	2	724.395553	1446.77655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.975	1	38.594	38.094	39.094	-0.38104								0	0	0	0.95686	1	14304	14304		2.7352	0	1				33702	3153	21307	21423	32441	32441					0.07103555802473238
TLHSALPHQP	10	Unmodified	_TLHSALPHQP_					0	0	0		CSTF1|p.G395Afs*23|1|0.04|ENSG00000101138|chr20:56403613-56403614|GG/-|frameshift_variant	CSTF1|p.G395Afs*23|1|0.04|ENSG00000101138|chr20:56403613-56403614|GG/-|frameshift_variant	CSTF1|p.G395Afs*23|1|0.04|ENSG00000101138|chr20:56403613-56403614|GG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	550.796142578125	2	550.795998	1099.57744	0.53023	0.00029205	-0.047779	-2.6316E-05	0.48246	0.00026573	550.7960281563253	28.144	0.41606	27.813	27.596	28.012	-0.33138					13	7	2	0	0	0	0.37629	1	10110	10110		43.858	1.9027	1	3543900			33703	611	21308	21424	32442	32442					0.03163663566078867
TLHSRFLEGV	10	Unmodified	_TLHSRFLEGV_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MSMS	HCT116MG_D190212_S2	2	579.8173217773438	2	579.81693	1157.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.34	1	40.268	39.768	40.768	-0.072838								0	0	0	0.19781	1	15210	15210		68.76	30.584	1				33704	1518	21309	21425	32443	32443					0.0468021925460107
TLHVSQSFAK	10	Unmodified	_TLHVSQSFAK_					0	0	0			REV__ENSG00000127903|ENST00000537055|ZNF835	REV__ENSG00000127903|ENST00000537055|ZNF835	MULTI-MSMS	HCT116MG_D190212_S1	1	560.29345703125	2	559.303655	1116.59276	0.39304	0.00021983	0.22659	0.00012673	0.61963	0.00034656	559.3033508475926	16.107	0.31266	16.107	15.9	16.213	0					10	5	3	0	0	0	0.8392	1	5440	5440		8.7454	0	1	6089700	+		33705	11865	21310	21426	32444	32444					0.03912530363277256
TLICASWSSPA	11	Unmodified	_TLICASWSSPA_					0	0	0		ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	ENST00000413628.5_1_1:68568378-68586877:+|nuORF	MSMS	HCT116MG_D190212_S4	4	379.2123107910156	3	379.186592	1134.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.308	1	37.925	37.425	38.425	-0.38283								0	0	0	0.95636	1	14035	14035		1.2148	0	1				33706	7743	21311	21427	32445	32445					-0.02394224499653319
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-5|DNM3	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	585.3607788085938	2	585.360639	1168.70673	0.52421	0.00030685	0.082954	4.8558E-05	0.60716	0.00035541	585.3606204682073	54.927	0.25615	54.739	54.56	54.816	-0.18797					13	4	4	0	0	0	0.030607	1	21163	21163		102.55	37.075	1	187920000			33707	718;6190	21312	21428	32446	32446					0.12912000405481194
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.L793Pfs*31|1|0.35|ENSG00000079805|chr19:10830205-10830206|-/C|frameshift_variant;nc|ENSG00000079805|P50570-3|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-5|DNM3	DNM2|p.L793*|2|0.27|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	585.360639	1168.70673	0.47614	0.00027871	0.95875	0.00056121	1.4349	0.00083993	585.8626078306097	55.035	0.26163	54.743	54.613	54.874	-0.2918	0.0020222	0.00093934	NaN	102.55	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2877800			33708	718;6190	21312	21428							0.12912000405481194
TLIGKKAA	8	Unmodified	_TLIGKKAA_					0	0	0			REV__tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1	REV__tr|U7SJE6|U7SJE6_FUSNUPhosphomethylpyrimidinesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=thiCPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	401.26202392578125	2	401.263271	800.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.755	1	56.471	55.971	56.971	-0.28367								0	0	0	0.8837	1	21553	21553		0.79363	0	1		+		33709	17692	21313	21429	32447	32447					0.10375294111031508
TLIGLSIKV	9	Unmodified	_TLIGLSIKV_					0	0	0		ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	472.26678466796875	2	472.312961	942.611368	0.19165	9.0518E-05	-0.62022	-0.00029294	-0.42857	-0.00020242	472.31252655289217	54.056	0.15424	53.867	53.79	53.945	-0.1894					4	2	2	0	0	0	0.22961	1	20789	20789		24.991	6.8446	1	16631000			33710	4870	21314	21430	32448	32448					0.13776692005137647
TLIIVLSSIEN	11	Unmodified	_TLIIVLSSIEN_					0	0	0			REV__ENSG00000186886|ENST00000641440|OR5D3P	REV__ENSG00000186886|ENST00000641440|OR5D3P	MSMS	HCT116MG_D190212_S1	1	601.35546875	2	601.355554	1200.69655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.379	1	36.379	35.879	36.879	0								0	0	0	0.93374	1	13560	13560		23.79	1.1317	1		+		33711	13903	21315	21431	32449	32449					0.10423392680309007
TLITDGMRSV	10	Unmodified	_TLITDGMRSV_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant;ENST00000397477.2_1_22:32665833-32665884:+|nuORF	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	546.7896118164062	2	546.789524	1091.56449	0.40619	0.0002221	-0.13631	-7.4536E-05	0.26988	0.00014757	546.7894641756055	42.926	0.46717	42.926	42.588	43.056	0					19	8	4	0	0	0	0.027082	1	16206	16206		107.56	41.107	1	101120000			33712	594	21316	21432	32450	32450					0.022374643917146386
TLITDGMRSV	10	Unmodified	_TLITDGMRSV_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;CPSF1|p.V640Wfs*20|1|0.36|ENSG00000071894|chr8:144398110-144398110|G/-|frameshift_variant;CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant;ENST00000397477.2_1_22:32665833-32665884:+|nuORF	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	546.7901611328125	2	546.789524	1091.56449	0.46064	0.00025187	0.75411	0.00041234	1.2148	0.00066421	546.7898296812067	42.888	0.61751	42.818	42.637	43.255	-0.069984					21	11	3	0	0	0	0.019431	1	16247	16247		121.5	41.907	1	243710000			33713	594	21316	21432	32451	32451					0.022374643917146386
TLIWRFLREYT	11	Unmodified	_TLIWRFLREYT_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MSMS	HCT116MG_D190212_S3	3	749.4144287109375	2	749.414269	1496.81398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.892	1	41.589	41.089	42.089	-0.30257								0	0	0	0.95976	1	15589	15589		2.9952	2.9952	1		+		33714	12028	21317	21433	32452	32452					0.08544970339721658
TLIWTQTKK	9	Unmodified	_TLIWTQTKK_					0	0	0			REV__KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant	REV__KITLG|p.K125Nfs*31|2|0.29|ENSG00000049130|chr12:88516479-88516479|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	373.5569763183594	3	373.557125	1117.64954	0.021661	8.0917E-06	-0.33331	-0.00012451	-0.31165	-0.00011642	373.5569060838888	31.681	0.20833	31.432	31.302	31.51	-0.24883					6	3	2	0	0	0	0.45222	1	11721	11721		19.626	3.8873	1	27581000	+		33715	10612	21318	21434	32453	32453					0.09542577919796713
TLKALEAQ	8	Unmodified	_TLKALEAQ_					0	0	0		SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant;SPEF2|p.I1348Nfs*12|1|0.34|ENSG00000152582|chr5:35773981-35773982|-/A|frameshift_variant;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;SPEF2|p.N1040Tfs*10|1|0.32|ENSG00000152582|chr5:35739972-35739972|A/-|frameshift_variant;nc|ENSG00000152582|Q9C093-3|SPEF2;SPEF2|p.M234*|1|0.13|ENSG00000152582|chr5:35646776-35646776|A/-|frameshift_variant	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	437.2536315917969	2	437.255643	872.496732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.747	1	42.372	41.872	42.872	-0.37493								0	0	0	0.8837	1	15723	15723		5.2307	0	1				33716	4157	21319	21435	32454	32454					0.055383825231729134
TLKDRLSRRWI	11	Unmodified	_TLKDRLSRRWI_					0	0	0		ENSG00000162433|ENST00000327299|AK4	ENSG00000162433|ENST00000327299|AK4	ENSG00000162433|ENST00000327299|AK4	MSMS	HCT116MG_D190212_S2	2	722.4295043945312	2	722.430784	1442.84702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.684	1	36.569	36.069	37.069	-0.11478								0	0	0	0.94755	1	13726	13726		7.609	1.8771	1				33717	4521	21320	21436	32455	32455					0.1433059718244749
TLKELKDEKIY	11	Unmodified	_TLKELKDEKIY_					0	0	0			REV__KLC1|p.K156Nfs*65|3|0.27|ENSG00000126214|chr14:103657746-103657746|A/-|frameshift_variant	REV__KLC1|p.K156Nfs*65|3|0.27|ENSG00000126214|chr14:103657746-103657746|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	690.3955688476562	2	690.392667	1378.77078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.529	1	40.227	39.727	40.727	-0.30161								0	0	0	0.94755	1	15049	15049		7.609	2.7119	1		+		33718	11834	21321	21437	32456	32456					0.09654735771800915
TLKHGRSP	8	Unmodified	_TLKHGRSP_					0	0	0			REV__ENSG00000124688|ENST00000372171|MAD2L1BP	REV__ENSG00000124688|ENST00000372171|MAD2L1BP	MULTI-MSMS	HCT116MG_D190212_S3	3	448.25897216796875	2	448.259051	894.503549	0.033947	1.5217E-05	0.18549	8.3148E-05	0.21944	9.8365E-05	448.2589616684742	49.362	0.78775	49.046	48.657	49.445	-0.31596					39	14	4	0	0	0	0.8672	1	18528	18528		2.3027	0	1	42745000	+		33719	11794	21322	21438	32457	32457					0.05207740194430244
TLKKKMGK	8	Unmodified	_TLKKKMGK_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MSMS	HCT116MG_D190212_S4	4	467.30108642578125	2	467.29933	932.584108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.096	1	49.737	49.237	50.237	-0.35878								0	0	0	0.8837	1	18601	18601		2.3027	0	1				33720	4193	21323	21439	32458	32458					0.11511885193112903
TLKKMSSRKE	10	Unmodified	_TLKKMSSRKE_					0	0	0			REV__ENST00000541080.5_1_10:135346228-135350593:+|nuORF	REV__ENST00000541080.5_1_10:135346228-135350593:+|nuORF	MSMS	HCT116MG_D190212_S3	3	403.2320556640625	3	403.232424	1206.67544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.3695	1	9.3956	8.8956	9.8956	0.026101								0	0	0	0.97116	1	2831	2831		0	0	1		+		33721	16366	21324	21440	32459	32459					0.08037104099798853
TLKLHKKQLQS	11	Unmodified	_TLKLHKKQLQS_					0	0	0		nc|ENSG00000188394|Q9Y3P9-2|RABGAP1;ENST00000475607.1_1_9:125795982-125827833:+|nuORF	nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	MSMS	HCT116MG_D190212_S2	2	662.4080810546875	2	662.408986	1322.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.296	1	41.228	40.728	41.728	-0.068199								0	0	0	0.94012	1	15599	15599		11.495	3.3392	1				33722	9588	21325	21441	32460	32460					0.15492987685342996
TLKQKKLKK	9	Unmodified	_TLKQKKLKK_					0	0	0			REV__ENST00000452862.1_1_3:197577273-197577471:-|nuORF	REV__ENST00000452862.1_1_3:197577273-197577471:-|nuORF	MSMS	HCT116MG_D190212_S2	2	372.2591247558594	3	372.260531	1113.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.586	1	38.502	38.002	39.002	-0.084618								0	0	0	0.76998	1	14498	14498		0.96228	0.72643	1		+		33723	15724	21326	21442	32461	32461					0.20743422978853232
TLKRGNVTEEF	11	Unmodified	_TLKRGNVTEEF_					0	0	0			REV__ENSG00000152642|ENST00000282541|GPD1L	REV__ENSG00000152642|ENST00000282541|GPD1L	MULTI-MSMS	HCT116MG_D190212_S4	4	647.3441772460938	2	647.343509	1292.67246	0.52905	0.00034248	0.457	0.00029584	0.98605	0.00063832	647.3437905677077	42.004	0.34457	41.627	41.442	41.786	-0.37637					10	6	2	0	0	0	0.73844	1	15398	15398		7.609	1.4171	1	2850500	+		33724	12634	21327	21443	32462	32462					0.03783552246613908
TLKRLVKKP	9	Unmodified	_TLKRLVKKP_					0	0	0		sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1;sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1	sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1	sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	361.1857604980469	3	361.585126	1081.73355	-0.27802	-0.00010053	0.50941	0.0001842	0.2314	8.367E-05	361.9197272565738	32.397	0.31192	32.167	31.942	32.254	-0.23009					10	5	3	0	0	0	0.25874	1	11967	11967		4.5289	2.0304	1	10711000			33725	18209	21328	21444	32463	32463					0.19595153807381394
TLKVVLLLPPP	11	Unmodified	_TLKVVLLLPPP_					0	0	0			REV__ENST00000430375.1_1_3:190946511-190947557:-|nuORF	REV__ENST00000430375.1_1_3:190946511-190947557:-|nuORF	MSMS	HCT116MG_D190212_S1	1	397.2694396972656	3	397.268804	1188.78458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.533	1	57.533	57.033	58.033	0								0	0	0	0.95665	1	22141	22141		2.8433	0	1		+		33726	15580	21329	21445	32464	32464					0.19774058061580035
TLLAPGPH	8	Unmodified	_TLLAPGPH_					0	0	0			REV__ENST00000568025.1_1_6:166796808-166797144:+|nuORF	REV__ENST00000568025.1_1_6:166796808-166797144:+|nuORF	MSMS	HCT116MG_D190212_S3	3	403.2325134277344	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0502	1	3.0955	2.5955	3.5955	0.045237								0	0	0	0.8837	1	922	922		0.79363	0	1		+		33727	16555	21330	21446	32465	32465					0.039341480428561226
TLLEDGTFKV	10	Unmodified	_TLLEDGTFKV_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	561.805908203125	2	561.805697	1121.59684	0.31576	0.00017739	0.11613	6.5245E-05	0.43189	0.00024264	561.8056491773775	49.041	0.26017	49.041	48.871	49.131	0					11	4	4	0	0	0	0.24695	1	18685	18685		55.235	22.449	1	75397000			33728	8915	21331	21447	32466	32466					0.04090575066334168
TLLEDGTFKV	10	Unmodified	_TLLEDGTFKV_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MSMS	HCT116MG_D190212_S2	2	561.8064575195312	2	561.805697	1121.59684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.172	1	49.017	48.517	49.517	-0.15405								0	0	0	0.28951	1	18810	18810		61.09	22.475	1				33729	8915	21331	21447	32467	32467					0.04090575066334168
TLLEDGTFKV	10	Unmodified	_TLLEDGTFKV_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MSMS	HCT116MG_D190212_S3	3	561.8064575195312	2	561.805697	1121.59684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.441	1	49.125	48.625	49.625	-0.31596								0	0	0	0.88806	1	18618	18618		17.443	1.5955	1				33730	8915	21331	21447	32468	32468					0.04090575066334168
TLLFKGMKR	9	Unmodified	_TLLFKGMKR_					0	0	0			REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	547.3320922851562	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.059	1	41.059	40.559	41.559	0								0	0	0	0.76902	1	15450	15450		4.3292	0	1		+		33731	17755	21332	21448	32469	32469					0.10515245630199388
TLLFKGMKR	9	Unmodified	_TLLFKGMKR_					0	0	0			REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	REV__tr|U7SQR6|U7SQR6_FUSNULipopolysaccharideN-acetylglucosaminyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01764PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	547.3327026367188	2	547.331162	1092.64777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.925	1	57.636	57.136	58.136	-0.28879								0	0	0	0.76967	1	21756	21756		2.0598	0	1		+		33732	17755	21332	21448	32470	32470					0.10515245630199388
TLLGFVIA	8	Unmodified	_TLLGFVIA_					0	0	0			REV__ENSG00000259120|ENST00000579469|SMIM6	REV__ENSG00000259120|ENST00000579469|SMIM6	MSMS	HCT116MG_D190212_S4	4	417.17547607421875	2	417.260197	832.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.061	1	35.676	35.176	36.176	-0.38558								0	0	0	0.8837	1	13182	13182		10.183	0	1		+		33733	14409	21333	21449	32471	32471					0.08288775879509558
TLLILSLKRHT	11	Unmodified	_TLLILSLKRHT_					0	0	0		ENSG00000221937|ENST00000408947|TAS2R40;ENSG00000236398|ENST00000446620|TAS2R39	ENSG00000221937|ENST00000408947|TAS2R40	ENSG00000221937|ENST00000408947|TAS2R40	MSMS	HCT116MG_D190212_S2	2	432.28021240234375	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.125	1	41.057	40.557	41.557	-0.068199								0	0	0	0.95307	1	15529	15529		4.7159	2.8095	1				33734	6471	21334	21450	32472	32472					0.1781017569069263
TLLLGHGG	8	Unmodified	_TLLLGHGG_					0	0	0		tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	384.2229309082031	2	384.224146	766.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.463	1	36.162	35.662	36.662	-0.30113								0	0	0	0.8837	1	13474	13474		2.5775	0	1				33735	18375	21335	21451	32473	32473					0.0411786152581044
TLLLHQKVPS	10	Unmodified	_TLLLHQKVPS_					0	0	0		ENST00000477986.2_1_14:74512798-74514942:+|nuORF	ENST00000477986.2_1_14:74512798-74514942:+|nuORF	ENST00000477986.2_1_14:74512798-74514942:+|nuORF	MSMS	HCT116MG_D190212_S4	4	568.74169921875	2	568.345323	1134.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.886	1	36.501	36.001	37.001	-0.38486								0	0	0	0.84701	1	13516	13516		22.736	0	1				33736	8215	21336	21452	32474	32474					0.11414266811129892
TLLLKIAKM	9	Unmodified	_TLLLKIAKM_					0	0	0			REV__PUS7L|p.F461L|1|0.08|ENSG00000129317|chr12:43738373-43738373|A/G|missense_variant	REV__PUS7L|p.F461L|1|0.08|ENSG00000129317|chr12:43738373-43738373|A/G|missense_variant	MSMS	HCT116MG_D190212_S2	2	515.8397216796875	2	515.838288	1029.66202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.386	1	58.215	57.715	58.715	-0.1703								0	0	0	0.76967	1	22564	22564		2.0598	0.21551	1		+		33737	17456	21337	21453	32475	32475					0.14837898058453902
TLLLVFKSLI	10	Unmodified	_TLLLVFKSLI_					0	0	0			REV__ENST00000534125.1_1_11:117712437-117712596:-|nuORF	REV__ENST00000534125.1_1_11:117712437-117712596:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	573.8824462890625	2	573.878468	1145.74238	0.28494	0.00016352	2.4398	0.0014001	2.7247	0.0015636	574.3800438578816	58.537	0.50776	58.537	58.261	58.769	0					13	9	2	0	0	0	0.88752	1	22609	22609		1.6526	0	1	100010000	+		33738	16330	21338	21454	32476	32476					0.17534082653173755
TLLLVLVL	8	Unmodified	_TLLLVLVL_					0	0	0		ENSG00000182931|ENST00000330523|WFDC10B	ENSG00000182931|ENST00000330523|WFDC10B	ENSG00000182931|ENST00000330523|WFDC10B	MSMS	HCT116MG_D190212_S1	1	442.3135070800781	2	442.314972	882.615391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.099	1	40.099	39.599	40.599	0								0	0	0	0.8837	1	15062	15062		9.3474	0	1				33739	5692	21339	21455	32477	32477					0.16938781498834032
TLLNVIKSV	9	Unmodified	_TLLNVIKSV_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR1|p.E2433K|1|0.46|ENSG00000150995|chr3:4811289-4811289|G/A|missense_variant;ITPR1|p.E2433D|1|0.29|ENSG00000150995|chr3:4811291-4811291|G/T|missense_variant;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	HCT116MG_D190212_S2	2	493.8161926269531	2	493.815867	985.617182	0.16575	8.1849E-05	0.11649	5.7522E-05	0.28223	0.00013937	493.8158913854522	53.254	0.25868	53.065	52.913	53.172	-0.18922					6	4	2	0	0	0	0.27966	1	20502	20502		32.898	5.269	1	8949600			33740	2789;4098	21340	21456	32478	32478					0.12379790516808953
TLLRLRGRLL	10	Unmodified	_TLLRLRGRLL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MSMS	HCT116MG_D190212_S2	2	404.27545166015625	3	404.275063	1209.80336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.549	1	22.164	21.664	22.664	-0.3852								0	0	0	0.96263	1	7994	7994		1.9064	0	1				33741	1474	21341	21457	32479	32479					0.20685032475989829
TLLSAHAA	8	Unmodified	_TLLSAHAA_					0	0	0		ENST00000480284.1_1_7:156803758-156803869:+|nuORF	ENST00000480284.1_1_7:156803758-156803869:+|nuORF	ENST00000480284.1_1_7:156803758-156803869:+|nuORF	MSMS	HCT116MG_D190212_S1	1	392.2210693359375	2	392.221603	782.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.082	1	40.082	39.582	40.582	0								0	0	0	0.8837	1	15055	15055		9.3474	0	1				33742	8240	21342	21458	32480	32480					0.028735576631788717
TLLSKRRS	8	Unmodified	_TLLSKRRS_					0	0	0		ENST00000490962.1_1_3:72926935-72927124:-|nuORF	ENST00000490962.1_1_3:72926935-72927124:-|nuORF	ENST00000490962.1_1_3:72926935-72927124:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	480.80120849609375	2	480.801083	959.587613	0.26158	0.00012577	0.16241	7.8085E-05	0.42399	0.00020385	480.80104933815164	51.838	1.9737	51.493	50.947	52.92	-0.34541					117	37	5	0	0	0	0.86564	1	19163	19163		2.5775	0	1	368980000			33743	8339	21343	21459	32481	32481					0.10620271291338668
TLLSRSAKY	9	Unmodified	_TLLSRSAKY_					0	0	0			REV__ENST00000483496.1_1_10:116153284-116164214:-|nuORF	REV__ENST00000483496.1_1_10:116153284-116164214:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	520.30224609375	2	519.800749	1037.58694	0.28595	0.00014863	-0.023717	-1.2328E-05	0.26223	0.00013631	520.3022644766813	51.426	0.25187	51.426	51.297	51.549	0					6	4	2	0	0	0	0.17767	1	19676	19676		32.305	0	1	21497000	+		33744	15974	21344	21460	32482	32482					0.06965431851631365
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15;ARHGEF15|p.L618Rfs*24|1|0.38|ENSG00000198844|chr17:8318643-8318643|T/-|frameshift_variant	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	HCT116MG_D190212_S1	1	509.8033752441406	2	509.803823	1017.59309	0.28088	0.0001432	0.081667	4.1634E-05	0.36255	0.00018483	509.8037134890037	44.547	1.1554	44.547	44.088	45.244	0					37	21	3	0	0	0	0.71345	1	17066	17066		4.3292	0	1	29504000			33745	6286	21345	21461	32483	32483					0.08499950083148633
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15;ARHGEF15|p.L618Rfs*24|1|0.38|ENSG00000198844|chr17:8318643-8318643|T/-|frameshift_variant	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	HCT116MG_D190212_S1	1	509.8039855957031	2	509.803823	1017.59309	0.48279	0.00024613	0.053665	2.7358E-05	0.53645	0.00027348	509.80375680977505	46.274	1.7665	46.274	45.295	47.062	0					96	33	3	0	0	0	0.71898	2	17295	17295;17749		3.9444	1.2938	1	212600000			33746	6286	21345	21461	32484;32485	32484					0.08499950083148633
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15;ARHGEF15|p.L618Rfs*24|1|0.38|ENSG00000198844|chr17:8318643-8318643|T/-|frameshift_variant	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	HCT116MG_D190212_S2	2	509.8040771484375	2	509.803823	1017.59309	0.50318	0.00025652	0.33177	0.00016914	0.83495	0.00042566	509.8037437814938	46.656	2.2652	46.545	45.648	47.913	-0.11122					129	43	5	0	0	0	0.72399	1	17716	17716		3.5965	3.5965	1	83331000			33747	6286	21345	21461	32486	32486					0.08499950083148633
TLLTAIVKL	9	Unmodified	_TLLTAIVKL_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	HCT116MG_D190212_S2	2	486.3287658691406	2	486.328611	970.642668	0.28668	0.00013942	0.090194	4.3864E-05	0.37687	0.00018328	486.32859571542946	56.734	0.16022	56.555	56.421	56.582	-0.17904					6	2	3	0	0	0	0.0035147	1	21898	21898		168.66	76.005	1	39136000			33748	823	21346	21462	32487	32487					0.15617265039236372
TLLVLGAI	8	Unmodified	_TLLVLGAI_					0	0	0			REV__tr|U7SUW6|U7SUW6_FUSNUPrecorrin-6yC5,15-methyltransferase(Decarboxylating),CbiEsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01032PE=4SV=1	REV__tr|U7SUW6|U7SUW6_FUSNUPrecorrin-6yC5,15-methyltransferase(Decarboxylating),CbiEsubunitOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01032PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	400.2693176269531	2	400.268022	798.521491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.489	1	61.229	60.729	61.729	-0.2602								0	0	0	0.8837	1	23198	23198		2.5775	0	1		+		33749	17836	21347	21463	32488	32488					0.11417062396583333
TLLWDRPLL	9	Unmodified	_TLLWDRPLL_					0	0	0		CIITA|p.R599W|1|0.34|ENSG00000179583|chr16:10907287-10907287|C/T|missense_variant	CIITA|p.R599W|1|0.34|ENSG00000179583|chr16:10907287-10907287|C/T|missense_variant	CIITA|p.R599W|1|0.34|ENSG00000179583|chr16:10907287-10907287|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	376.2263488769531	3	376.225486	1125.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.742	1	43.664	43.164	44.164	-0.078373								0	0	0	0.76886	1	16594	16594		4.897	0	1				33750	464	21348	21464	32489	32489					0.09682881782418917
TLNDIMTRV	9	Unmodified	_TLNDIMTRV_					0	0	0		NFRKB|p.K311Rfs*13|8|0.27|ENSG00000170322|chr11:129882601-129882601|T/-|frameshift_variant;nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	NFRKB|p.K311Rfs*13|8|0.27|ENSG00000170322|chr11:129882601-129882601|T/-|frameshift_variant;nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MSMS	HCT116MG_D190212_S2	2	532.265625	2	531.784241	1061.55393	0.42553	0.00022629	0.42904	0.00022815	0.85456	0.00045444	531.7843809664221	45.395	0.20641	45.302	45.153	45.359	-0.092472					5	3	2	0	0	0	0.32155	1	17228	17228		28.495	1.6109	1	5056200			33751	9693;5122	21349	21465	32490	32490					0.025614817372570542
TLNEKLTAL	9	Unmodified	_TLNEKLTAL_					0	0	0		ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1	ENSG00000254999|ENST00000530758|BRK1	ENSG00000254999|ENST00000530758|BRK1	MSMS	HCT116MG_D190212_S1	1	501.7952880859375	2	501.795132	1001.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.193	1	41.193	40.693	41.693	0								0	0	0	0.011985	1	15504	15504		103.82	7.457	1				33752	6601	21350	21466	32491	32491					0.07498609757453778
TLNEKLTAL	9	Unmodified	_TLNEKLTAL_					0	0	0		ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1	ENSG00000254999|ENST00000530758|BRK1	ENSG00000254999|ENST00000530758|BRK1	MULTI-MSMS	HCT116MG_D190212_S2	2	501.7959899902344	2	501.795132	1001.57571	0.28657	0.0001438	0.17075	8.568E-05	0.45732	0.00022948	501.79498354911715	41.165	0.25671	41.097	40.934	41.191	-0.068199					8	4	3	0	0	0	0.011034	1	15560	15560		110.79	17.627	1	31131000			33753	6601	21350	21466	32492	32492					0.07498609757453778
TLNKDEANKLY	11	Unmodified	_TLNKDEANKLY_					0	0	0		tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	tr|U7SUD6|U7SUD6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01114PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	654.8438110351562	2	654.843342	1307.67213	0.78239	0.00051235	-0.16577	-0.00010855	0.61663	0.00040379	654.8430369495821	46.801	0.26067	46.487	46.333	46.594	-0.31405					6	3	2	0	0	0	0.36112	1	17581	17581		10.8	2.644	1	6082400			33754	18475	21351	21467	32493	32493					0.03060132526752568
TLNLTWQP	8	Unmodified	_TLNLTWQP_					0	0	0		TEK|p.S586Vfs*12|1|0.27|ENSG00000120156|chr9:27197441-27197441|A/-|frameshift_variant;TEK|p.E624Nfs*33|1|0.41|ENSG00000120156|chr9:27197556-27197556|G/-|frameshift_variant;TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant;TEK|p.N884Kfs*6|1|0.16|ENSG00000120156|chr9:27209197-27209197|C/-|frameshift_variant;nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	TEK|p.S586Vfs*12|1|0.27|ENSG00000120156|chr9:27197441-27197441|A/-|frameshift_variant	TEK|p.S586Vfs*12|1|0.27|ENSG00000120156|chr9:27197441-27197441|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	486.7628479003906	2	486.761092	971.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.191	1	34.016	33.516	34.516	-0.17512								0	0	0	0.62663	1	12712	12712		36.044	1.9418	1				33755	2687	21352	21468	32494	32494					0.02073784897470432
TLNNLRLN	8	Unmodified	_TLNNLRLN_					0	0	0			REV__HELB|p.I1074T|1|0.32|ENSG00000127311|chr12:66338059-66338059|T/C|missense_variant	REV__HELB|p.I1074T|1|0.32|ENSG00000127311|chr12:66338059-66338059|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	479.27716064453125	2	479.277441	956.540328	0.30198	0.00014473	0.11443	5.4843E-05	0.41641	0.00019958	479.27733473985813	45.696	0.78125	45.385	44.835	45.616	-0.31094					28	14	2	0	0	0	0.8506	1	17040	17040		5.2307	0	1	6813900	+		33756	16872	21353	21469	32495	32495					0.060319920203255606
TLNNQIDP	8	Unmodified	_TLNNQIDP_					0	0	0			REV__PCF11|p.K196N|2|0.26|ENSG00000165494|chr11:83164287-83164287|G/T|missense_variant	REV__PCF11|p.K196N|2|0.26|ENSG00000165494|chr11:83164287-83164287|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	457.7323913574219	2	457.732532	913.45051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.698	1	26.698	26.198	27.198	0								0	0	0	0.67883	1	9657	9657		32.305	2.0807	1		+		33757	17397	21354	21470	32496	32496					-0.009676823789163791
TLNSHDDQP	9	Unmodified	_TLNSHDDQP_					0	0	0			REV__FARS2|p.M233Pfs*5|1|0.1|ENSG00000145982|chr6:5404616-5404617|-/AC|frameshift_variant	REV__FARS2|p.M233Pfs*5|1|0.1|ENSG00000145982|chr6:5404616-5404617|-/AC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	513.7294311523438	2	513.727978	1025.4414	0.43049	0.00022115	1.2871	0.0006612	1.7175	0.00088235	513.728887516259	25.797	0.26146	25.797	25.666	25.927	0					5	4	2	0	0	0	0.65706	1	9335	9335		7.9102	0	1	3704500	+		33758	12469	21355	21471	32497	32497					-0.0703007573524701
TLPGLTPEPGP	11	Unmodified	_TLPGLTPEPGP_					0	0	0			REV__ENST00000484115.5_1_3:49027419-49028262:+|nuORF	REV__ENST00000484115.5_1_3:49027419-49028262:+|nuORF	MSMS	HCT116MG_D190212_S4	4	539.7943725585938	2	539.792589	1077.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.996	1	42.621	42.121	43.121	-0.37493								0	0	0	0.92235	1	15824	15824		17.113	3.2068	1		+		33759	13605	21356	21472	32498	32498					0.03494305894855643
TLPRNINHL	9	Unmodified	_TLPRNINHL_					0	0	0			REV__GATA3|p.V378Cfs*26|1|0.31|ENSG00000107485|chr10:8073817-8073817|A/-|frameshift_variant	REV__GATA3|p.V378Cfs*26|1|0.31|ENSG00000107485|chr10:8073817-8073817|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	539.310302734375	2	539.311815	1076.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.462	1	46.462	45.962	46.962	0								0	0	0	0.74436	1	17629	17629		16.942	0	1		+		33760	11322	21357	21473	32499	32499					0.07383656320030241
TLQCARYVY	9	Unmodified	_TLQCARYVY_					0	0	0		SLC25A33|p.G235Wfs*10|1|0.42|ENSG00000171612|chr1:9580166-9580167|-/T|frameshift_variant;ENSG00000171612|ENST00000302692|SLC25A33	SLC25A33|p.G235Wfs*10|1|0.42|ENSG00000171612|chr1:9580166-9580167|-/T|frameshift_variant	SLC25A33|p.G235Wfs*10|1|0.42|ENSG00000171612|chr1:9580166-9580167|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	558.77880859375	2	558.778959	1115.54336	0.64308	0.00035934	-0.47379	-0.00026475	0.16928	9.4591E-05	558.7787359111052	46.417	0.35675	46.105	45.978	46.335	-0.31237					12	6	3	0	0	0	0.30117	1	17416	17416		30.637	10.222	1	13879000			33761	5207	21358	21474	32500	32500					-0.009785009171764614
TLQGGAAF	8	Unmodified	_TLQGGAAF_					0	0	0		ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.T371Nfs*32|2|0.26|ENSG00000171320|chr8:27787975-27787976|-/A|frameshift_variant;ENSG00000171320|ENST00000305188|ESCO2	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MSMS	HCT116MG_D190212_S2	2	382.700439453125	2	382.700503	763.386454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.508	1	33.315	32.815	33.815	-0.19297								0	0	0	0.70483	1	12436	12436		30.225	0	1				33762	5190	21359	21475	32501	32501					-0.00470417745202667
TLQGLEIEL	9	Unmodified	_TLQGLEIEL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;CON__P08730-1;CON__A2A4G1;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171401|P13646-2|KRT13;CON__P19001	CON__P08727;CON__P08730-1;CON__P19001	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S1	1	1015.5671997070312	1	1015.567	1014.55973	0.85981	0.00087319	-0.26118	-0.00026524	0.59863	0.00060795	1015.5666669640979	56.608	0.15482	56.608	56.48	56.634	0					4	2	2	0	0	0	0.01389	1	21775	21775		103.75	7.4635	1	22755000		+	33763	559;563;534	21360	21476	32502	32502					0.05302903520566815
TLQGLEIEL	9	Unmodified	_TLQGLEIEL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;CON__P08730-1;CON__A2A4G1;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000171401|ENST00000246635|KRT13;CON__P13646-1;nc|ENSG00000171401|P13646-2|KRT13;CON__P19001	CON__P08727;CON__P08730-1;CON__P19001	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S2	2	1015.5675659179688	1	1015.567	1014.55973	0.80848	0.00082107	-0.13859	-0.00014075	0.66989	0.00068032	1015.566607032419	56.734	0.21328	56.555	56.421	56.635	-0.17904					8	3	3	0	0	0	0.0053819	1	21904	21904		134.3	7.7297	1	59162000		+	33764	559;563;534	21360	21476	32503	32503					0.05302903520566815
TLQKSTKEV	9	Unmodified	_TLQKSTKEV_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000597423.1_1_19:59058531-59059226:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S1	1	517.2489013671875	2	517.298039	1032.58152	0.52045	0.00026923	-0.25215	-0.00013043	0.2683	0.00013879	517.2978231032405	17.072	0.20861	17.072	16.942	17.15	0					5	3	2	0	0	0	0.020429	2	5777	5777;5809		96.034	46.101	1	11481000			33765	3098	21361	21477	32504;32505	32504					0.06653708269118397
TLQKSTKEV	9	Unmodified	_TLQKSTKEV_					0	0	0		nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000597423.1_1_19:59058531-59059226:+|nuORF	nc|ENSG00000130726|Q13263-2|TRIM28	nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	HCT116MG_D190212_S2	2	517.2981567382812	2	517.298039	1032.58152	0.24605	0.00012728	-0.0019734	-1.0208E-06	0.24407	0.00012626	517.2980124508265	17.719	0.31339	17.362	17.232	17.545	-0.35647					11	5	3	0	0	0	0.0064252	1	6051	6051		125.18	64.091	1	49808000			33766	3098	21361	21477	32506	32506					0.06653708269118397
TLQPDQLP	8	Unmodified	_TLQPDQLP_					0	0	0			REV__EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant	REV__EPN1|p.G278Afs*164|1|0.5|ENSG00000063245|chr19:55691818-55691818|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	456.2440185546875	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.533	1	42.157	41.657	42.657	-0.37565								0	0	0	0.77419	1	15636	15636		24.674	2.9272	1		+		33767	16796	21362	21478	32507	32507					0.017177921435177268
TLQPNLWDP	9	Unmodified	_TLQPNLWDP_					0	0	0		ENST00000248054.9_2_19:16990048-16990192:+|nuORF	ENST00000248054.9_2_19:16990048-16990192:+|nuORF	ENST00000248054.9_2_19:16990048-16990192:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	361.853515625	3	361.85383	1082.53966	-0.1626	-5.8839E-05	-0.27337	-9.8919E-05	-0.43597	-0.00015776	361.85374715607026	30.711	0.19458	30.45	30.358	30.552	-0.26071					6	3	2	0	0	0	0.35128	1	11226	11226		18.373	3.1246	1	7904400			33768	6793	21363	21479	32508	32508					0.0016915258061089844
TLQPPHISV	9	Unmodified	_TLQPPHISV_					0	0	0			REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant	REV__HSPG2|p.G2190Afs*19|1|0.38|ENSG00000142798|chr1:21852941-21852941|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	496.2829284667969	2	496.282192	990.549831	0.34708	0.00017225	0.65281	0.00032398	0.99988	0.00049622	496.2824114838525	45.433	0.20892	45.122	44.992	45.2	-0.31094					8	3	3	0	0	0	0.47809	1	17022	17022		18.146	0	1	5574300	+		33769	12368	21364	21480	32509	32509					0.05417760305851971
TLQPQLSLPR	10	Unmodified	_TLQPQLSLPR_					0	0	0			REV__TBXA2R|p.S329P|1|0.07|ENSG00000006638|chr19:3595735-3595735|A/G|missense_variant	REV__TBXA2R|p.S329P|1|0.07|ENSG00000006638|chr19:3595735-3595735|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	384.8960266113281	3	384.896029	1151.66626	0.054535	2.099E-05	-0.25533	-9.8275E-05	-0.20079	-7.7284E-05	384.8959807132213	22.543	0.31136	22.158	22.051	22.362	-0.3852					6	5	2	0	0	0	0.52513	1	8017	8017		23.964	5.6244	1	7409200	+		33770	17621	21365	21481	32510	32510					0.09649078805750833
TLQRHRRI	8	Unmodified	_TLQRHRRI_					0	0	0		GZF1|p.A561T|1|0.32|ENSG00000125812|chr20:23369637-23369637|G/A|missense_variant	GZF1|p.A561T|1|0.32|ENSG00000125812|chr20:23369637-23369637|G/A|missense_variant	GZF1|p.A561T|1|0.32|ENSG00000125812|chr20:23369637-23369637|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	540.8360595703125	2	540.330873	1078.64719	0.49658	0.00026832	-0.70556	-0.00038123	-0.20897	-0.00011291	540.3301372040181	45.888	1.5967	45.787	44.987	46.584	-0.1014					54	30	3	0	0	0	0.81821	1	17678	17678		9.3474	1.4373	1	38300000			33771	9203	21366	21482	32511	32511					0.1110158702535955
TLRGILISQ	9	Unmodified	_TLRGILISQ_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MSMS	HCT116MG_D190212_S1	1	500.81121826171875	2	500.811116	999.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.642	1	35.642	35.142	36.142	0								0	0	0	0.41664	1	13265	13265		32.786	5.1569	1				33772	3011	21367	21483	32512	32512					0.10786022231286552
TLRHDFTMS	9	Unmodified	_TLRHDFTMS_					0	0	0			REV__GABRR3|p.K138M|1|0.13|ENSG00000183185|chr3:98012461-98012461|T/A|missense_variant	REV__GABRR3|p.K138M|1|0.13|ENSG00000183185|chr3:98012461-98012461|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	369.5121765136719	3	369.846569	1106.51788	-0.070289	-2.5996E-05	0.33902	0.00012538	0.26873	9.9388E-05	369.8466729411969	21.306	0.21176	21.306	21.226	21.437	0					5	3	2	0	0	0	0.25734	1	7513	7513		10.151	3.0488	1	5739500	+		33773	13750	21368	21484	32513	32513					-0.031119754396058852
TLRKLKKVE	9	Unmodified	_TLRKLKKVE_					0	0	0			REV__nc|ENSG00000211809|A0A087WT01|TRAV27	REV__nc|ENSG00000211809|A0A087WT01|TRAV27	MSMS	HCT116MG_D190212_S4	4	372.2492980957031	3	372.248403	1113.72338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.623	1	31.253	30.753	31.753	-0.37026								0	0	0	0.76954	1	11485	11485		2.4985	0	1		+		33774	17283	21369	21485	32514	32514					0.17106546082118257
TLRLHKATLC	10	Unmodified	_TLRLHKATLC_					0	0	0		ATG2A|p.R1075C|1|0.18|ENSG00000110046|chr11:64906154-64906154|G/A|missense_variant	ATG2A|p.R1075C|1|0.18|ENSG00000110046|chr11:64906154-64906154|G/A|missense_variant	ATG2A|p.R1075C|1|0.18|ENSG00000110046|chr11:64906154-64906154|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	578.3389892578125	2	578.336975	1154.6594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.591	1	38.506	38.006	39.006	-0.084618								0	0	0	0.92272	1	14500	14500		10.824	2.9138	1				33775	212	21370	21486	32515	32515					0.08825442653551363
TLRLKLWLPAK	11	Unmodified	_TLRLKLWLPAK_					0	0	0			REV__AP1G2|p.R756W|1|0.09|ENSG00000213983|chr14:23559841-23559841|G/A|missense_variant	REV__AP1G2|p.R756W|1|0.09|ENSG00000213983|chr14:23559841-23559841|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	669.935791015625	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.916	1	47.6	47.1	48.1	-0.31596								0	0	0	0.95954	1	18007	18007		1.3295	0	1		+		33776	9954	21371	21487	32516	32516					0.19931356450024396
TLRPCIHVGP	10	Unmodified	_TLRPCIHVGP_					0	0	0			REV__ENST00000485101.5_1_3:186506527-186506686:+|nuORF	REV__ENST00000485101.5_1_3:186506527-186506686:+|nuORF	MSMS	HCT116MG_D190212_S2	2	364.8695373535156	3	364.870938	1091.59098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.345	1	16.003	15.503	16.503	-0.34183								0	0	0	0.94107	1	5494	5494		3.5871	0.26742	1		+		33777	15979	21372	21488	32517	32517					0.048851980736799305
TLRRLREAP	9	Unmodified	_TLRRLREAP_					0	0	0		ENST00000483546.1_1_6:5002311-5004281:-|nuORF;RPP40|p.N327Kfs*2|1|0.32|ENSG00000124787|chr6:4995189-4995190|-/T|frameshift_variant;nc|ENSG00000124787|O75818-2|RPP40;RPP40|p.N327Mfs*16|1|0.12|ENSG00000124787|chr6:4995190-4995190|T/-|frameshift_variant;ENSG00000124787|ENST00000380051|RPP40	ENST00000483546.1_1_6:5002311-5004281:-|nuORF	ENST00000483546.1_1_6:5002311-5004281:-|nuORF	MSMS	HCT116MG_D190212_S4	4	371.2275085449219	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.554	1	40.175	39.675	40.675	-0.37828								0	0	0	0.76991	1	14882	14882		1.1933	0	1				33778	2865	21373	21489	32518	32518					0.1112703410267386
TLRRYKRHYKL	11	Unmodified	_TLRRYKRHYKL_					0	0	0		ENST00000520731.1_1_5:153832004-153835585:+|nuORF;nc|ENSG00000164576|Q9HAJ7-2|SAP30L;nc|ENSG00000164576|Q9HAJ7-3|SAP30L;ENSG00000164576|ENST00000297109|SAP30L	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	MSMS	HCT116MG_D190212_S4	4	767.4625244140625	2	767.459876	1532.9052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.85	1	49.488	48.988	49.988	-0.36213								0	0	0	0.95636	1	18503	18503		2.9952	2.6446	1				33779	4703	21374	21490	32519	32519					0.16006278827740061
TLRSTDIPR	9	Unmodified	_TLRSTDIPR_					0	0	0			REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	REV__EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	353.8708801269531	3	353.536612	1057.58801	0.18162	6.4211E-05	-0.22132	-7.8244E-05	-0.039694	-1.4033E-05	353.87072781545396	33.315	0.25711	33.122	33.019	33.276	-0.19297					5	4	2	0	0	0	0.19273	1	12384	12384		21.59	0	1	19024000	+		33780	10449	21375	21491	32520	32520					0.06151646220496332
TLRWQRWQRRR	11	Unmodified	_TLRWQRWQRRR_					0	0	0		ENSG00000167895|ENST00000318430|TMC8;TMC8|p.L494Pfs*7|1|0.38|ENSG00000167895|chr17:78138130-78138131|-/C|frameshift_variant;TMC8|p.P141Lfs*7|2|0.28|ENSG00000167895|chr17:78132477-78132477|C/-|frameshift_variant	ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	MSMS	HCT116MG_D190212_S1	1	547.9981689453125	3	547.981824	1640.92364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.48	1	52.48	51.98	52.98	0								0	0	0	0.96208	1	20074	20074		0	0	1				33781	4961	21376	21492	32521	32521					0.1288183352228316
TLSARGPG	8	Unmodified	_TLSARGPG_					0	0	0			REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF	REV__ENST00000361658.6_1_17:19770872-19771034:-|nuORF	MSMS	HCT116MG_D190212_S4	4	379.710693359375	2	379.711402	757.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.303	1	43.93	43.43	44.43	-0.37373								0	0	0	0.8837	1	16317	16317		5.7604	0	1		+		33782	15096	21377	21493	32522	32522					0.019843870033810163
TLSAYPPP	8	Unmodified	_TLSAYPPP_					0	0	0			REV__RNF111|p.P773Hfs*44|5|0.42|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	REV__RNF111|p.P773Hfs*44|5|0.42|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	423.2237854003906	2	423.223811	844.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.216	1	28.994	28.494	29.494	-0.22195								0	0	0	0.8837	1	10605	10605		15.768	0	1		+		33783	12752	21378	21494	32523	32523					0.004630220860804002
TLSDFQERPC	10	Unmodified	_TLSDFQERPC_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MSMS	HCT116MG_D190212_S1	1	598.2720947265625	2	598.274238	1194.53392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.167	1	28.167	27.667	28.667	0								0	0	0	0.92607	1	10251	10251		10.074	0.6908	1		+		33784	10996	21379	21495	32524	32524					-0.055563139933383354
TLSDIKALI	9	Unmodified	_TLSDIKALI_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MSMS	HCT116MG_D190212_S2	2	487.29876708984375	2	487.30005	972.585547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.038	1	51.854	51.354	52.354	-0.18369								0	0	0	0.32687	1	19981	19981		38.176	0	1				33785	3079	21380	21496	32525	32525					0.09815797762848888
TLSDIMVSL	9	Unmodified	_TLSDIMVSL_					0	0	0		TEX10|p.F527Sfs*10|1|0.2|ENSG00000136891|chr9:100329185-100329185|A/-|frameshift_variant;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	TEX10|p.F527Sfs*10|1|0.2|ENSG00000136891|chr9:100329185-100329185|A/-|frameshift_variant	TEX10|p.F527Sfs*10|1|0.2|ENSG00000136891|chr9:100329185-100329185|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	978.517822265625	1	978.51761	977.510333	0.56217	0.00055009	-0.076877	-7.5226E-05	0.48529	0.00047487	978.5172971334526	56.919	0.15597	56.919	56.841	56.997	0					4	2	2	0	0	0	0.031005	1	21918	21918		85.357	18.013	1	17543000			33786	3441	21381	21497	32526	32526					0.020678722401157756
TLSDIMVSL	9	Unmodified	_TLSDIMVSL_					0	0	0		TEX10|p.F527Sfs*10|1|0.2|ENSG00000136891|chr9:100329185-100329185|A/-|frameshift_variant;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	TEX10|p.F527Sfs*10|1|0.2|ENSG00000136891|chr9:100329185-100329185|A/-|frameshift_variant	TEX10|p.F527Sfs*10|1|0.2|ENSG00000136891|chr9:100329185-100329185|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	978.5170288085938	1	978.51761	977.510333	0.76121	0.00074485	-0.3519	-0.00034434	0.40931	0.00040051	978.5172547946264	57.152	0.36301	56.973	56.844	57.207	-0.17904					8	6	2	0	0	0	0.023611	1	22065	22065		92.822	21.689	1	53304000			33787	3441	21381	21497	32527	32527					0.020678722401157756
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	540.3084106445312	2	540.308406	1078.60226	0.60847	0.00032876	-0.54191	-0.0002928	0.066566	3.5966E-05	540.3081410425176	54.103	0.20443	54.103	53.975	54.179	0					6	3	2	0	0	0	0.030039	1	20760	20760		86.332	26.258	1	79034000			33788	6662	21382	21498	32528	32528					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	540.308349609375	2	540.308406	1078.60226	0.48428	0.00026166	0.024716	1.3354E-05	0.509	0.00027502	540.30829361162	54.365	0.45946	54.176	53.996	54.456	-0.1894					15	8	4	0	0	0	0.0063854	1	20929	20929		125.53	65.455	1	234270000			33789	6662	21382	21498	32529	32529					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	540.8099365234375	2	540.308406	1078.60226	0.42228	0.00022816	0.050012	2.7022E-05	0.47229	0.00025518	540.8097804711009	54.486	0.15695	54.19	54.086	54.243	-0.29587					4	2	2	0	0	0	0.26031	1	20667	20667		34.932	10.911	1	3330300			33790	6662	21382	21498	32530	32530					0.06610298648797652
TLSDVVVGL	9	Unmodified	_TLSDVVVGL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	HCT116MG_D190212_S2	2	902.5193481445312	1	902.519325	901.512048	0.8748	0.00078953	-0.12026	-0.00010854	0.75454	0.00068099	902.5190169717765	54.329	0.25604	54.139	53.996	54.252	-0.1894					8	4	3	0	0	0	0.031005	1	20936	20936		85.357	0	1	33538000			33791	2224	21383	21499	32531	32531					0.057352493203779886
TLSDYNIQ	8	Unmodified	_TLSDYNIQ_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;UBC|p.R586H|1|0.28|ENSG00000150991|chr12:124912015-124912015|C/T|missense_variant	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MSMS	HCT116MG_D190212_S1	1	477.31695556640625	2	477.232364	952.450176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.152	1	57.152	56.652	57.652	0								0	0	0	0.8837	1	21987	21987		2.5775	0.27475	1				33792	3840	21384	21500	32532	32532					-0.027951020987757147
TLSEGPHHV	9	Unmodified	_TLSEGPHHV_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000475899.1_1_3:193355061-193361921:+|nuORF	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MSMS	HCT116MG_D190212_S2	2	488.7462158203125	2	488.745973	975.477394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.401	1	20.022	19.522	20.522	-0.37949								0	0	0	0.64498	1	7129	7129		21.747	0	1				33793	6282	21385	21501	32533	32533					-0.011325737677225334
TLSERLWGL	9	Unmodified	_TLSERLWGL_					0	0	0		ENST00000498134.1_1_13:33528197-33528527:-|nuORF;ENST00000416399.2_1_10:120403290-120403707:+|nuORF;ENSG00000100216|ENST00000216034|TOMM22;ENST00000492561.1_1_22:39078186-39079843:+|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	538.3021850585938	2	537.800749	1073.58694	0.55872	0.00030048	0.53852	0.00028961	1.0972	0.00059009	537.8005576017651	54.739	0.25423	54.739	54.637	54.892	0					10	4	4	0	0	0	0.012596	1	21015	21015		106.94	36.225	1	57714000			33794	1676	21386	21502	32534	32534					0.0530943185160595
TLSERLWGL	9	Unmodified	_TLSERLWGL_					0	0	0		ENST00000498134.1_1_13:33528197-33528527:-|nuORF;ENST00000416399.2_1_10:120403290-120403707:+|nuORF;ENSG00000100216|ENST00000216034|TOMM22;ENST00000492561.1_1_22:39078186-39079843:+|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	ENST00000498134.1_1_13:33528197-33528527:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	537.8010864257812	2	537.800749	1073.58694	0.46342	0.00024923	-0.29023	-0.00015609	0.17318	9.3138E-05	537.8005140351348	54.927	0.20512	54.739	54.611	54.816	-0.18797					6	3	2	0	0	0	0.014023	1	21181	21181		103.42	47.242	1	149590000			33795	1676	21386	21502	32535	32535					0.0530943185160595
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2;SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	HCT116MG_D190212_S1	1	1004.5278930664062	1	1004.52587	1003.51859	0.96359	0.00096795	0.47565	0.0004778	1.4392	0.0014458	1004.5263557923481	41.315	0.20788	41.315	41.185	41.393	0					5	3	2	0	0	0	0.0034906	1	15581	15581		158.2	34.752	1	10196000			33796	5116	21387	21503	32536	32536					0.016971424811004
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2;SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	HCT116MG_D190212_S1	1	502.7670593261719	2	502.766571	1003.51859	0.57119	0.00028717	0.39561	0.0001989	0.9668	0.00048607	502.766803032686	41.329	0.20788	41.329	41.185	41.393	0					7	3	3	0	0	0	0.071351	1	15584	15584		64.236	29.835	1	10033000			33797	5116	21387	21503	32537	32537					0.016971424811004
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2;SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	HCT116MG_D190212_S2	2	502.76629638671875	2	502.766571	1003.51859	0.47252	0.00023757	-0.015677	-7.8817E-06	0.45684	0.00022968	502.7664425226953	41.307	0.56497	41.239	41.14	41.705	-0.068199					17	10	2	0	0	0	0.0066233	1	15625	15625		123.45	48.522	1	20523000			33798	5116	21387	21503	32538	32538					0.016971424811004
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2;SIK2|p.P829Lfs*49|1|0.43|ENSG00000170145|chr11:111723830-111723830|C/-|frameshift_variant	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	HCT116MG_D190212_S2	2	1004.5247192382812	1	1004.52587	1003.51859	0.54548	0.00054795	-0.08003	-8.0392E-05	0.46545	0.00046756	1004.5257604094858	41.336	0.20496	41.268	41.14	41.345	-0.068199					5	3	2	0	0	0	0.007119	1	15646	15646		120.45	12.453	1	22483000			33799	5116	21387	21503	32539	32539					0.016971424811004
TLSGHSQEV	9	Unmodified	_TLSGHSQEV_					0	0	0		ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	479.23541259765625	2	479.235439	956.456324	0.31347	0.00015023	-0.2369	-0.00011353	0.076569	3.6695E-05	479.2353650503359	20.772	0.31274	20.772	20.644	20.956	0					10	5	3	0	0	0	0.0038512	1	7280	7280		152.89	53.131	1	11416000			33800	2574	21388	21504	32540	32540					-0.023645838672223363
TLSGHSQEV	9	Unmodified	_TLSGHSQEV_					0	0	0		ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	479.2350769042969	2	479.235439	956.456324	0.14998	7.1877E-05	-0.17864	-8.5613E-05	-0.028662	-1.3736E-05	479.23534944638845	21.319	0.31056	20.936	20.807	21.117	-0.38288					11	5	3	0	0	0	0.0068642	1	7504	7504		121.35	41.75	1	44246000			33801	2574	21388	21504	32541	32541					-0.023645838672223363
TLSHSYHITK	10	Unmodified	_TLSHSYHITK_					0	0	0		nc|ENSG00000150773|Q8WWB5-3|PIH1D2;nc|ENSG00000150773|Q8WWB5-2|PIH1D2;ENSG00000150773|ENST00000280350|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	MSMS	HCT116MG_D190212_S1	1	396.21282958984375	3	396.212017	1185.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.958	1	28.958	28.458	29.458	0								0	0	0	0.90422	1	10566	10566		14.957	5.7134	1				33802	4092	21389	21505	32542	32542					0.028839153919761884
TLSHSYHITK	10	Unmodified	_TLSHSYHITK_					0	0	0		nc|ENSG00000150773|Q8WWB5-3|PIH1D2;nc|ENSG00000150773|Q8WWB5-2|PIH1D2;ENSG00000150773|ENST00000280350|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	MSMS	HCT116MG_D190212_S4	4	396.2125549316406	3	396.212017	1185.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.59	1	29.241	28.741	29.741	-0.34921								0	0	0	0.92238	1	10692	10692		10.899	1.6552	1				33803	4092	21389	21505	32543	32543					0.028839153919761884
TLSIHELGPQ	10	Unmodified	_TLSIHELGPQ_					0	0	0		ENST00000469797.5_1_14:75137455-75152321:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1	ENST00000469797.5_1_14:75137455-75152321:-|nuORF	ENST00000469797.5_1_14:75137455-75152321:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	547.7955322265625	2	547.795663	1093.57677	0.57844	0.00031687	-0.22119	-0.00012117	0.35725	0.0001957	547.795307962071	46.894	0.25895	46.894	46.751	47.01	0					7	4	2	0	0	0	0.35312	1	17825	17825		45.74	0.040262	1	21748000			33804	2657	21390	21506	32544	32544					0.03372824126358864
TLSLILVVILV	11	Unmodified	_TLSLILVVILV_					0	0	0		ENSG00000187266|ENST00000222139|EPOR;nc|ENSG00000187266|P19235-3|EPOR	ENSG00000187266|ENST00000222139|EPOR	ENSG00000187266|ENST00000222139|EPOR	MSMS	HCT116MG_D190212_S3	3	591.9061279296875	2	591.907225	1181.7999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.074	1	37.772	37.272	38.272	-0.30137								0	0	0	0.9598	1	14091	14091		1.1933	0.735	1				33805	5933	21391	21507	32545	32545					0.2162692485876505
TLSLLGKPD	9	Unmodified	_TLSLLGKPD_					0	0	0			REV__ENST00000494463.1_1_1:160606951-160616738:-|nuORF	REV__ENST00000494463.1_1_1:160606951-160616738:-|nuORF	MSMS	HCT116MG_D190212_S3	3	472.2751159667969	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.856	1	30.595	30.095	31.095	-0.26071								0	0	0	0.74436	1	11251	11251		16.942	1.0951	1		+		33806	11608	21392	21508	32546	32546					0.06502938211713172
TLSPANNSH	9	Unmodified	_TLSPANNSH_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	HCT116MG_D190212_S2	2	470.7278747558594	2	470.727781	939.441008	0.42103	0.00019819	0.10051	4.7312E-05	0.52154	0.0002455	470.7276281637961	24.004	0.36377	23.621	23.403	23.767	-0.38324					10	6	2	0	0	0	0.60612	1	8628	8628		10.824	0	1	6768900			33807	1728	21393	21509	32547	32547					-0.031134506644320936
TLSPDGMKVQP	11	Unmodified	_TLSPDGMKVQP_					0	0	0		ENST00000583447.5_1_17:37219733-37228839:+|nuORF	ENST00000583447.5_1_17:37219733-37228839:+|nuORF	ENST00000583447.5_1_17:37219733-37228839:+|nuORF	MSMS	HCT116MG_D190212_S4	4	586.8016357421875	2	586.802631	1171.59071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.238	1	46.867	46.367	47.367	-0.37038								0	0	0	0.94269	1	17467	17467		10.151	0.76745	1				33808	8971	21394	21510	32548	32548					0.011777335631677488
TLSPGSHLV	9	Unmodified	_TLSPGSHLV_					0	0	0		ENST00000404801.1_1_19:35451891-35454808:-|nuORF	ENST00000404801.1_1_19:35451891-35454808:-|nuORF	ENST00000404801.1_1_19:35451891-35454808:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	455.753173828125	2	455.753267	909.491981	0.098925	4.5085E-05	-0.75192	-0.00034269	-0.653	-0.00029761	455.75325342606266	34.848	0.36434	34.551	34.336	34.7	-0.29707					11	6	2	0	0	0	0.32162	1	12880	12880		28.487	0	1	7416600			33809	7707	21395	21511	32549	32549					0.03361498380411376
TLSPVRPPVGP	11	Unmodified	_TLSPVRPPVGP_					0	0	0		ENST00000486149.2_1_6:30954274-30955276:+|nuORF	ENST00000486149.2_1_6:30954274-30955276:+|nuORF	ENST00000486149.2_1_6:30954274-30955276:+|nuORF	MSMS	HCT116MG_D190212_S3	3	560.3284301757812	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.003	1	33.709	33.209	34.209	-0.29419								0	0	0	0.94416	1	12500	12500		9.3831	0	1				33810	8293	21396	21512	32550	32550					0.09021693777026485
TLSQKQADQP	10	Unmodified	_TLSQKQADQP_					0	0	0			REV__ENST00000453846.5_1_2:172248699-172291213:-|nuORF	REV__ENST00000453846.5_1_2:172248699-172291213:-|nuORF	MSMS	HCT116MG_D190212_S4	4	558.2890014648438	2	558.288202	1114.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.69	1	22.453	21.953	22.953	-0.23758								0	0	0	0.91022	1	7907	7907		13.615	2.1202	1		+		33811	15728	21397	21513	32551	32551					0.00915332258387025
TLSTLCNEP	9	Unmodified	_TLSTLCNEP_					0	0	0			REV__ENSG00000181790|ENST00000517894|ADGRB1	REV__ENSG00000181790|ENST00000517894|ADGRB1	MSMS	HCT116MG_D190212_S3	3	489.2345886230469	2	489.23405	976.453547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.544	1	36.242	35.742	36.742	-0.30113								0	0	0	0.64498	1	13506	13506		21.747	1.293	1		+		33812	13697	21398	21514	32552	32552					-0.035621753164150505
TLSYSKKLWVY	11	Unmodified	_TLSYSKKLWVY_					0	0	0			REV__OR6N2|p.R261W|1|0.38|ENSG00000188340|chr1:158776855-158776855|G/A|missense_variant	REV__OR6N2|p.R261W|1|0.38|ENSG00000188340|chr1:158776855-158776855|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	694.3858642578125	2	694.384645	1386.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.681	1	40.611	40.111	41.111	-0.069626								0	0	0	0.95113	1	15348	15348		5.7319	2.7366	1		+		33813	17376	21399	21515	32553	32553					0.07683074325564121
TLTEEGVIKV	10	Unmodified	_TLTEEGVIKV_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-MSMS	HCT116MG_D190212_S1	1	545.3157958984375	2	544.813522	1087.61249	0.92963	0.00050647	-0.087759	-4.7812E-05	0.84187	0.00045866	544.8133681091854	41.576	0.2083	41.576	41.445	41.654	0					8	3	3	0	0	0	0.01091	1	15667	15667		143.91	78.674	1	23488000			33814	2137	21400	21516	32554	32554					0.07218861583396574
TLTEEGVIKV	10	Unmodified	_TLTEEGVIKV_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-MSMS	HCT116MG_D190212_S2	2	544.814208984375	2	544.813522	1087.61249	0.66416	0.00036184	0.069542	3.7888E-05	0.7337	0.00039973	544.8134807098696	41.592	0.30799	41.523	41.345	41.653	-0.068199					13	5	3	0	0	0	0.0064345	1	15710	15710		163.69	78.045	1	78158000			33815	2137	21400	21516	32555	32555					0.07218861583396574
TLTGKTITL	9	Unmodified	_TLTGKTITL_					0	0	0		ENSG00000143947|ENST00000272317|RPS27A;ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;UBB|p.D191Tfs*35|2|0.18|ENSG00000170315|chr17:16382471-16382471|C/-|frameshift_variant;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000445497.1_1_2:149621139-149621370:-|nuORF;ENST00000463185.1_1_2:55459960-55460026:+|nuORF;ENST00000453803.2_1_20:35677668-35677815:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000471772.6_1_2:55459960-55460558:+|nuORF	ENSG00000143947|ENST00000272317|RPS27A	ENSG00000143947|ENST00000272317|RPS27A	MULTI-MSMS	HCT116MG_D190212_S1	1	474.24676513671875	2	474.292225	946.569897	0.17302	8.2062E-05	-0.70825	-0.00033592	-0.53524	-0.00025386	474.29176261730635	41.055	0.25175	41.055	40.986	41.237	0					6	4	2	0	0	0	0.24534	1	15497	15497		36.506	0	1	8028100			33816	3840	21401	21517	32556	32556					0.09447511245809892
TLTKKKKLKK	10	Unmodified	_TLTKKKKLKK_					0	0	0			REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MSMS	HCT116MG_D190212_S1	1	608.8711547851562	2	608.42919	1214.84383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.083	1	60.083	59.583	60.583	0								0	0	0	0.96937	1	23153	23153		0.40072	0.40072	1		+		33817	15176	21402	21518	32557	32557					0.2449995407573624
TLTKKKKLKK	10	Unmodified	_TLTKKKKLKK_					0	0	0			REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MSMS	HCT116MG_D190212_S2	2	608.4292602539062	2	608.42919	1214.84383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.485	1	60.33	59.83	60.83	-0.15441								0	0	0	0.96937	1	23410	23410		0.40072	0.40072	1		+		33818	15176	21402	21518	32558	32558					0.2449995407573624
TLTKKKKLKKK	11	Unmodified	_TLTKKKKLKKK_					0	0	0			REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MSMS	HCT116MG_D190212_S2	2	672.5106201171875	2	672.476672	1342.93879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.988	1	28.672	28.172	29.172	-0.31613								0	0	0	0.96208	1	10599	10599		0	0	1		+		33819	15176	21403	21519	32559	32559					0.28103887546899387
TLTLKRKKK	9	Unmodified	_TLTLKRKKK_					0	0	0			REV__ERCC4|p.K632Nfs*3|1|0.14|ENSG00000175595|chr16:13937846-13937846|A/-|frameshift_variant	REV__ERCC4|p.K632Nfs*3|1|0.14|ENSG00000175595|chr16:13937846-13937846|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	559.3842163085938	2	558.384783	1114.75501	0.43587	0.00024338	-0.3371	-0.00018823	0.098775	5.5154E-05	558.3849504405352	60.248	0.97773	60.093	59.492	60.47	-0.15441					35	18	3	0	0	0	0.76814	2	23262	23216;23262		0.52476	0	1	21204000	+		33820	13521	21404	21520	32560;32561	32561					0.20222538836083004
TLTNAVDAFFT	11	Unmodified	_TLTNAVDAFFT_					0	0	0		nc|ENSG00000050820|P56945-6|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1;nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1	nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-6|BCAR1	MSMS	HCT116MG_D190212_S4	4	600.2986450195312	2	600.300778	1198.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.615	1	28.284	27.784	28.784	-0.33138								0	0	0	0.93456	1	10298	10298		14.405	0.49933	1				33821	9372	21405	21521	32562	32562					-0.004346129390569331
TLTNIIHNL	9	Unmodified	_TLTNIIHNL_					0	0	0		ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	MSMS	HCT116MG_D190212_S2	2	519.8009643554688	2	519.800749	1037.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.648	1	51.464	50.964	51.964	-0.18369								0	0	0	9.1832E-05	1	19821	19821		137.42	48.47	1				33822	3008	21406	21522	32563	32563					0.06965431851608628
TLTSIPQTQA	10	Unmodified	_TLTSIPQTQA_					0	0	0		nc|ENSG00000113615|O95486-2|SEC24A;ENSG00000113615|ENST00000398844|SEC24A	nc|ENSG00000113615|O95486-2|SEC24A	nc|ENSG00000113615|O95486-2|SEC24A	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2880249023438	2	530.287671	1058.56079	0.69697	0.00036959	-0.14541	-7.7108E-05	0.55156	0.00029249	530.2875594620074	32.767	0.3125	32.482	32.3	32.612	-0.28511					13	5	3	0	0	0	0.072018	1	12025	12025		79.596	9.2643	1	20062000			33823	2397	21407	21523	32564	32564					0.03385117889479261
TLTSKLYSL	9	Unmodified	_TLTSKLYSL_					0	0	0		nc|ENSG00000184076|Q9UDW1-2|UQCR10;ENSG00000184076|ENST00000330029|UQCR10	nc|ENSG00000184076|Q9UDW1-2|UQCR10	nc|ENSG00000184076|Q9UDW1-2|UQCR10	MULTI-MSMS	HCT116MG_D190212_S1	1	513.2973022460938	2	513.297507	1024.58046	0.50132	0.00025733	0.063612	3.2652E-05	0.56493	0.00028998	513.2973540808713	45.949	0.20886	45.949	45.818	46.027	0					6	3	2	0	0	0	0.011132	1	17423	17423		110.55	10.797	1	18606000			33824	5756	21408	21524	32565	32565					0.0691549390023738
TLTSKLYSL	9	Unmodified	_TLTSKLYSL_					0	0	0		nc|ENSG00000184076|Q9UDW1-2|UQCR10;ENSG00000184076|ENST00000330029|UQCR10	nc|ENSG00000184076|Q9UDW1-2|UQCR10	nc|ENSG00000184076|Q9UDW1-2|UQCR10	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2979125976562	2	513.297507	1024.58046	0.24736	0.00012697	0.43179	0.00022164	0.67915	0.00034861	513.2976434530079	45.905	0.41032	45.803	45.658	46.068	-0.1014					11	7	2	0	0	0	0.32162	1	17485	17485		28.487	5.3384	1	51883000			33825	5756	21408	21524	32566	32566					0.0691549390023738
TLTSPHAP	8	Unmodified	_TLTSPHAP_					0	0	0			REV__ENST00000483781.5_1_2:98330105-98349944:+|nuORF	REV__ENST00000483781.5_1_2:98330105-98349944:+|nuORF	MSMS	HCT116MG_D190212_S3	3	412.21795654296875	2	412.21906	822.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.816	1	33.525	33.025	34.025	-0.29013								0	0	0	0.8837	1	12425	12425		5.7604	0	1		+		33826	11526	21409	21525	32567	32567					0.005252538005720453
TLTVRATRG	9	Unmodified	_TLTVRATRG_					0	0	0			REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	MULTI-MSMS	HCT116MG_D190212_S1	1	487.7914733886719	2	487.790715	973.566878	0.28651	0.00013976	0.31986	0.00015602	0.60637	0.00029578	487.79074246951876	45.122	3.1262	45.122	43.936	47.062	0					135	59	4	0	0	0	0.49616	1	17171	17171		17.113	3.2068	1	110330000	+		33827	13174	21410	21526	32568	32568					0.07903680911670108
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	HCT116MG_D190212_S1	1	546.3086547851562	2	546.308406	1090.60226	0.50645	0.00027668	-0.1687	-9.2164E-05	0.33774	0.00018451	546.3083212742314	56.505	0.15454	56.505	56.428	56.583	0					4	2	2	0	0	0	0.29516	1	21747	21747		31.268	1.4278	1	28682000			33828	2587	21411	21527	32569	32569					0.06058298648804339
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	HCT116MG_D190212_S2	2	546.30859375	2	546.308406	1090.60226	0.56065	0.00030629	-0.053239	-2.9085E-05	0.50741	0.0002772	546.3083150149129	56.627	0.21278	56.445	56.312	56.524	-0.18261					8	3	3	0	0	0	0.41881	1	21875	21875		21.537	6.6987	1	75647000			33829	2587	21411	21527	32570	32570					0.06058298648804339
TLVDEVNL	8	Unmodified	_TLVDEVNL_					0	0	0			REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	MULTI-MSMS	HCT116MG_D190212_S1	1	902.48291015625	1	902.482939	901.475663	0.55124	0.00049749	-0.20027	-0.00018074	0.35097	0.00031674	902.482681493963	50.91	0.25814	50.91	50.73	50.988	0					6	4	2	0	0	0	0.12463	1	19439	19439		89.427	0	1	17354000	+		33830	10083	21412	21528	32571	32571					0.02098372423665751
TLVDEVNL	8	Unmodified	_TLVDEVNL_					0	0	0			REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	MULTI-MSMS	HCT116MG_D190212_S2	2	902.4837036132812	1	902.482939	901.475663	0.85932	0.00077552	0.09992	9.0176E-05	0.95924	0.0008657	902.482810239891	51.119	0.41299	50.94	50.758	51.171	-0.17868					12	7	2	0	0	0	0.050259	1	19586	19586		123.1	13.467	1	67062000	+		33831	10083	21412	21528	32572	32572					0.02098372423665751
TLVDEVNL	8	Unmodified	_TLVDEVNL_					0	0	0			REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	902.482939	901.475663	0.55124	0.00049749	-0.20027	-0.00018074	0.35097	0.00031674	902.482681493963	50.91	0.25814	50.91	50.73	50.988	0	-0.041335	-0.00026795	NaN	123.1	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17354000	+		33832	10083	21412	21528							0.02098372423665751
TLVDEVNL	8	Unmodified	_TLVDEVNL_					0	0	0			REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	902.482939	901.475663	0.85932	0.00077552	0.09992	9.0176E-05	0.95924	0.0008657	902.482810239891	51.119	0.41299	50.94	50.758	51.171	-0.17868	-0.011029	2.9722E-06	NaN	123.1	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67062000	+		33833	10083	21412	21528							0.02098372423665751
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MULTI-SECPEP	HCT116MG_D190212_S1	1	527.80029296875	2	527.800217	1053.58588	0.30394	0.00016042	0.37325	0.000197	0.67719	0.00035742	527.800331020086	56.919	0.20796	56.919	56.789	56.997	0					5	3	2	0	0	0	0.10596	1	21903	21903		50.855	16.753	1	17176000			33834	2251	21413	21529	32573	32573					0.06123217482695509
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;MADD|p.P781Lfs*34|1|0.43|ENSG00000110514|chr11:47285118-47285118|T/-|frameshift_variant	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MULTI-MSMS	HCT116MG_D190212_S2	2	527.8003540039062	2	527.800217	1053.58588	0.50559	0.00026685	-0.21281	-0.00011232	0.29277	0.00015453	527.7999843863232	57.1	0.20721	56.921	56.792	56.999	-0.17904					10	3	4	0	0	0	0.065014	1	22047	22047		67.344	18.998	1	28219000			33835	2251	21413	21529	32574	32574					0.06123217482695509
TLVEAIKQV	9	Unmodified	_TLVEAIKQV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	HCT116MG_D190212_S1	1	500.80523681640625	2	500.8055	999.596446	0.15601	7.8133E-05	-0.11162	-5.5899E-05	0.044395	2.2233E-05	500.8055074260206	42.409	0.15647	42.409	42.278	42.435	0					4	2	2	0	0	0	0.0053819	1	16004	16004		134.3	59.367	1	7763400			33836	4249	21414	21530	32575	32575					0.09663200137140393
TLVEAIKQV	9	Unmodified	_TLVEAIKQV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	HCT116MG_D190212_S2	2	500.805908203125	2	500.8055	999.596446	0.44604	0.00022338	0.10181	5.0986E-05	0.54784	0.00027436	500.80553996084546	42.401	0.31083	42.331	42.119	42.429	-0.069981					9	5	2	0	0	0	0.0034865	1	16053	16053		165.72	62.367	1	14178000			33837	4249	21414	21530	32576	32576					0.09663200137140393
TLVIVTSL	8	Unmodified	_TLVIVTSL_					0	0	0		sp|P16809|IR11_HCMVAViralFc-gammareceptor-likeproteinIR11OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	sp|P16809|IR11_HCMVAViralFc-gammareceptor-likeproteinIR11OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	sp|P16809|IR11_HCMVAViralFc-gammareceptor-likeproteinIR11OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	423.2696533203125	2	423.270761	844.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.116	1	37.004	36.504	37.504	-0.11193								0	0	0	0.8837	1	13901	13901		5.2307	0	1				33838	18216	21415	21531	32577	32577					0.09848741188375243
TLVKKKKKK	9	Unmodified	_TLVKKKKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MSMS	HCT116MG_D190212_S2	2	550.73046875	2	550.897526	1099.7805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.894	1	14.574	14.074	15.074	-0.31952								0	0	0	0.77025	1	4910	4910		0	0	1				33839	6593	21416	21532	32578	32578					0.23460013358499054
TLVLARVPVSP	11	Unmodified	_TLVLARVPVSP_					0	0	0			REV__ENST00000533120.1_1_8:144648680-144649274:-|nuORF	REV__ENST00000533120.1_1_8:144648680-144649274:-|nuORF	MSMS	HCT116MG_D190212_S2	2	576.3588256835938	2	576.360973	1150.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.316	1	43.242	42.742	43.742	-0.073376								0	0	0	0.94851	1	16420	16420		7.1017	0.37856	1		+		33840	15383	21417	21533	32579	32579					0.13806839845233299
TLVPAKCRRL	10	Unmodified	_TLVPAKCRRL_					0	0	0		ENST00000602009.5_1_19:16512885-16513104:-|nuORF	ENST00000602009.5_1_19:16512885-16513104:-|nuORF	ENST00000602009.5_1_19:16512885-16513104:-|nuORF	MSMS	HCT116MG_D190212_S2	2	386.2383117675781	3	386.237621	1155.69103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.194	1	40.121	39.621	40.621	-0.072838								0	0	0	0.92607	1	15151	15151		5.7834	0	1				33841	9092	21418	21534	32580	32580					0.11941435407470635
TLVPSSEP	8	Unmodified	_TLVPSSEP_					0	0	0			REV__ENST00000496607.5_1_21:47686374-47686602:-|nuORF	REV__ENST00000496607.5_1_21:47686374-47686602:-|nuORF	MSMS	HCT116MG_D190212_S3	3	415.2189636230469	2	415.218726	828.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.357	1	26.208	25.708	26.708	-0.14924								0	0	0	0.8837	1	9452	9452		13.508	0	1		+		33842	16091	21419	21535	32581	32581					0.001824143608587292
TLVQRRIRQRR	11	Unmodified	_TLVQRRIRQRR_					0	0	0		ENSG00000229972|ENST00000440739|IQCF3	ENSG00000229972|ENST00000440739|IQCF3	ENSG00000229972|ENST00000440739|IQCF3	MSMS	HCT116MG_D190212_S3	3	741.1964721679688	2	741.466024	1480.9175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.816	1	52.509	52.009	53.009	-0.30639								0	0	0	0.9598	1	19975	19975		1.1933	0.32897	1				33843	6496	21420	21536	32582	32582					0.1962731529076791
TLVRRPKKV	9	Unmodified	_TLVRRPKKV_					0	0	0		ENSG00000135540|ENST00000343505|NHSL1;NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant	ENSG00000135540|ENST00000343505|NHSL1	ENSG00000135540|ENST00000343505|NHSL1	MSMS	HCT116MG_D190212_S2	2	366.2484130859375	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5201	1	8.2761	7.7761	8.7761	-0.24401								0	0	0	0.77018	1	2667	2667		0.26902	0	1				33844	3355	21421	21537	32583	32583					0.18001385521824886
TLVSLRIRFP	10	Unmodified	_TLVSLRIRFP_					0	0	0		ENST00000494060.1_1_22:32242927-32271288:+|nuORF	ENST00000494060.1_1_22:32242927-32271288:+|nuORF	ENST00000494060.1_1_22:32242927-32271288:+|nuORF	MSMS	HCT116MG_D190212_S1	1	401.25286865234375	3	401.252036	1200.73428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.253	1	54.253	53.753	54.753	0								0	0	0	0.96337	1	20799	20799		1.7423	0.14999	1				33845	8368	21422	21538	32584	32584					0.1419394845640909
TLVTKARKL	9	Unmodified	_TLVTKARKL_					0	0	0			REV__IL1RAP|p.V523F|1|0.18|ENSG00000196083|chr3:190648559-190648559|G/T|missense_variant	REV__IL1RAP|p.V523F|1|0.18|ENSG00000196083|chr3:190648559-190648559|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	515.7817993164062	2	515.342584	1028.67061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.033	1	54.033	53.533	54.533	0								0	0	0	0.76902	1	20709	20709		4.3292	0	1		+		33846	13999	21423	21539	32585	32585					0.15742588019315917
TLVTSEKPTLK	11	Unmodified	_TLVTSEKPTLK_					0	0	0			REV__ENST00000412414.6_1_2:207944323-207944539:-|nuORF	REV__ENST00000412414.6_1_2:207944323-207944539:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	608.8614501953125	2	608.861003	1215.70745	0.84985	0.00051744	-0.51451	-0.00031327	0.33534	0.00020417	608.8607649239982	42.577	0.26012	42.507	42.377	42.637	-0.069984					6	4	2	0	0	0	0.72218	1	16152	16152		13.615	0	1	18094000	+		33847	15447	21424	21540	32586	32586					0.1082279505455972
TLVTTLPI	8	Unmodified	_TLVTTLPI_					0	0	0		nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	MSMS	HCT116MG_D190212_S4	4	429.26947021484375	2	429.270761	856.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.832	1	39.453	38.953	39.953	-0.37936								0	0	0	0.8837	1	14606	14606		2.5775	0	1				33848	5098	21425	21541	32587	32587					0.09296741188370561
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MSMS	HCT116MG_D190212_S1	1	493.7861328125	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.728	1	43.728	43.228	44.228	0								0	0	0	0.013363	1	16528	16528		101.72	44.251	1				33849	6018	21426	21542	32588	32588					0.06630948311237717
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	HCT116MG_D190212_S2	2	494.28912353515625	2	493.78711	985.559667	0.66069	0.00032624	-0.29956	-0.00014792	0.36113	0.00017832	493.78690769114513	43.707	0.35981	43.628	43.402	43.762	-0.078369					15	6	3	0	0	0	0.0038257	1	16574	16574		153.26	75.278	1	51964000			33850	6018	21426	21542	32589	32589					0.06630948311237717
TLWCRDTLP	9	Unmodified	_TLWCRDTLP_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8|DNAH14	REV__nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2800903320312	2	552.778959	1103.54336	0.087474	4.8354E-05	1.0921	0.0006037	1.1796	0.00065205	552.7801678962493	36.288	0.57189	35.987	35.626	36.198	-0.30041					28	10	4	0	0	0	0.43775	1	13345	13345		20.454	0	1	20513000	+		33851	17248	21427	21543	32590	32590					-0.00426500917183148
TLWDKSKKL	9	Unmodified	_TLWDKSKKL_					0	0	0		ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	MULTI-MSMS	HCT116MG_D190212_S2	2	559.8324584960938	2	559.832049	1117.64954	0.60903	0.00034095	0.034165	1.9127E-05	0.64319	0.00036008	559.8319213907316	31.681	0.20833	31.432	31.302	31.51	-0.24883					8	3	3	0	0	0	0.13248	1	11708	11708		63.227	17.528	1	24023000			33852	4912	21428	21544	32591	32591					0.09542577919796713
TLWGIQKEL	9	Unmodified	_TLWGIQKEL_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	544.3112182617188	2	544.310949	1086.60735	0.29562	0.00016091	0.1354	7.3698E-05	0.43101	0.00023461	544.3108688659693	50.704	0.25816	50.704	50.523	50.781	0					10	4	3	0	0	0	0.0034469	1	19358	19358		179.17	107.25	1	90434000			33853	3280	21429	21545	32592	32592					0.06750602511419856
TLWGIQKEL	9	Unmodified	_TLWGIQKEL_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000397561.3_1_9:14921337-14921451:-|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	544.3103637695312	2	544.310949	1086.60735	0.49184	0.00026771	0.20864	0.00011356	0.70047	0.00038128	544.3109352051056	50.875	0.62024	50.696	50.449	51.069	-0.17868					24	11	3	0	0	0	0.0001093	1	19487	19487		197.81	119.08	1	207480000			33854	3280	21429	21545	32593	32593					0.06750602511419856
TLWPEVQKL	9	Unmodified	_TLWPEVQKL_					0	0	0		ENST00000541294.1_1_18:33739943-33744659:+|nuORF;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2	ENST00000541294.1_1_18:33739943-33744659:+|nuORF	ENST00000541294.1_1_18:33739943-33744659:+|nuORF	MSMS	HCT116MG_D190212_S1	1	557.3193359375	2	557.318774	1112.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.721	1	51.721	51.221	52.221	0								0	0	0	0.054343	1	19768	19768		69.105	23.084	1				33855	3302	21430	21546	32594	32594					0.07118889028470221
TLWPEVQKL	9	Unmodified	_TLWPEVQKL_					0	0	0		ENST00000541294.1_1_18:33739943-33744659:+|nuORF;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2	ENST00000541294.1_1_18:33739943-33744659:+|nuORF	ENST00000541294.1_1_18:33739943-33744659:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	557.319091796875	2	557.318774	1112.623	0.57354	0.00031965	0.11423	6.3661E-05	0.68777	0.00038331	557.3188008058053	52.044	0.5164	51.86	51.629	52.145	-0.18368					21	9	3	0	0	0	0.035349	2	19989	19989;20082		81.89	27.117	1	18054000			33856	3302	21430	21546	32595;32596	32595					0.07118889028470221
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	HCT116MG_D190212_S1	1	1121.5518798828125	1	1121.55135	1120.54408	0.59927	0.00067211	0.07768	8.7122E-05	0.67695	0.00075924	1121.5511473390652	56.454	0.20576	56.454	56.326	56.531	0					8	3	3	0	0	0	0.0051486	1	21725	21725		136.33	92.475	1	94074000			33857	3245	21431	21547	32597	32597					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	HCT116MG_D190212_S2	2	1121.5518798828125	1	1121.55135	1120.54408	0.65385	0.00073333	0.076981	8.6338E-05	0.73084	0.00081967	1121.5512211218954	56.627	0.37183	56.445	56.312	56.683	-0.18261					18	6	4	0	0	0	0.0040473	1	21853	21853		149.99	106.14	1	335350000			33858	3245	21431	21547	32598	32598					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	HCT116MG_D190212_S2	2	561.2794189453125	2	561.279315	1120.54408	0.50468	0.00028327	1.1365	0.00063791	1.6412	0.00092117	561.2798651388314	56.627	0.58069	56.445	56.207	56.788	-0.18261					17	10	3	0	0	0	0.063511	1	21865	21865		68.081	33.679	1	29588000			33859	3245	21431	21547	32599	32599					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	HCT116MG_D190212_S3	3	1121.55224609375	1	1121.55135	1120.54408	0.53821	0.00060363	0.87163	0.00097758	1.4098	0.0015812	1121.5520429380065	56.721	0.31314	56.438	56.307	56.62	-0.28367					11	5	3	0	0	0	0.063511	1	21563	21563		68.081	30.107	1	6080600			33860	3245	21431	21547	32600	32600					-0.011373829964895776
TLWVRCRERWF	11	Unmodified	_TLWVRCRERWF_					0	0	0			REV__ENST00000468918.5_1_3:119396099-119396264:-|nuORF	REV__ENST00000468918.5_1_3:119396099-119396264:-|nuORF	MSMS	HCT116MG_D190212_S3	3	776.4013671875	2	776.403712	1550.79287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.67	1	31.399	30.899	31.899	-0.27028								0	0	0	0.95636	1	11579	11579		2.9952	1.6657	1		+		33861	15851	21432	21548	32601	32601					0.03950681759215513
TLWYRAPEV	9	Unmodified	_TLWYRAPEV_					0	0	0		ENSG00000135446|ENST00000257904|CDK4;nc|ENSG00000135446|P11802-2|CDK4;ENST00000473078.1_1_7:92300738-92355023:-|nuORF;ENSG00000105810|ENST00000424848|CDK6	ENSG00000135446|ENST00000257904|CDK4;ENSG00000105810|ENST00000424848|CDK6	ENSG00000135446|ENST00000257904|CDK4	MSMS	HCT116MG_D190212_S2	2	567.801513671875	2	567.800749	1133.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.956	1	46.835	46.335	47.335	-0.12175								0	0	0	0.067027	1	17900	17900		65.474	9.9709	1				33862	3350;2036	21433	21549	32602	32602					0.025494318515939085
TLWYRPPEL	9	Unmodified	_TLWYRPPEL_					0	0	0		nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.P1267Lfs*27|1|0.33|ENSG00000167258|chr17:39530639-39530639|C/-|frameshift_variant;CDK12|p.G1271Dfs*23|2|0.26|ENSG00000167258|chr17:39530648-39530648|C/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;CDK13|p.K911Nfs*13|1|0.17|ENSG00000065883|chr7:40063048-40063048|A/-|frameshift_variant;CDK12|p.Q937Kfs*9|1|0.2|ENSG00000167258|chr17:39515766-39515766|T/-|frameshift_variant;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000136807|P50750-2|CDK9	MULTI-MSMS	HCT116MG_D190212_S2	2	587.8165283203125	2	587.816399	1173.61824	0.57608	0.00033863	-0.036332	-2.1356E-05	0.53975	0.00031727	587.8163803595312	52.786	0.30868	52.598	52.45	52.759	-0.18797					9	5	2	0	0	0	0.094138	2	20308	20230;20308		59.368	26.583	1	9421900			33863	9470;390	21434	21550	32603;32604	32604					0.038380048857106885
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S1	1	540.2907104492188	2	540.290214	1078.56587	0.21994	0.00011883	0.41707	0.00022534	0.63701	0.00034417	540.2904450960095	40.617	0.20238	40.617	40.487	40.69	0					5	3	2	0	0	0	0.07468	1	15292	15292		63.227	27.1	1	20582000			33864	6266	21435	21551	32605	32605					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S2	2	540.290283203125	2	540.290214	1078.56587	0.66334	0.00035839	0.086567	4.6771E-05	0.7499	0.00040516	540.2902707737534	40.614	0.30875	40.544	40.416	40.725	-0.069626					12	5	4	0	0	0	0.011034	2	15326	15326;15329		110.79	52.114	1	44516000			33865	6266	21435	21551	32606;32607	32606					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;RPL10A|p.P135Lfs*17|1|0.35|ENSG00000198755|chr6:35470270-35470270|C/-|frameshift_variant;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	HCT116MG_D190212_S3	3	540.4003295898438	2	540.290214	1078.56587	0.66644	0.00036007	-0.0019858	-1.0729E-06	0.66446	0.000359	540.2902019661312	40.803	0.15635	40.502	40.423	40.58	-0.30161					4	2	2	0	0	0	0.45684	1	15150	15150		19.362	1.2156	1	2413900			33866	6266	21435	21551	32608	32608					0.029734217520854145
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		ENST00000548880.1_1_12:53709415-53715282:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS	ENST00000548880.1_1_12:53709415-53715282:-|nuORF	ENST00000548880.1_1_12:53709415-53715282:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	566.7675170898438	2	566.767103	1131.51965	0.46919	0.00026592	-0.038365	-2.1744E-05	0.43083	0.00024418	566.7670971823633	31.518	0.41661	31.518	31.336	31.753	0					15	7	3	0	0	0	0.0060363	1	11590	11590		152.89	56.775	1	27739000			33867	1599	21436	21552	32609	32609					-0.0408464315000856
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		ENST00000548880.1_1_12:53709415-53715282:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS	ENST00000548880.1_1_12:53709415-53715282:-|nuORF	ENST00000548880.1_1_12:53709415-53715282:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	566.7671508789062	2	566.767103	1131.51965	0.64531	0.00036574	-0.11242	-6.3715E-05	0.53289	0.00030203	566.7669567001461	31.681	0.41443	31.432	31.25	31.665	-0.24883					15	7	3	0	0	0	0.0048001	1	11700	11700		165.72	65.921	1	82688000			33868	1599	21436	21552	32610	32610					-0.0408464315000856
TLYELEEI	8	Unmodified	_TLYELEEI_					0	0	0			REV__tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	REV__tr|U7T596|U7T596_FUSNUhistidinekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00490PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	504.73699951171875	2	505.258048	1008.50154	0.43315	0.00021885	-1.2975	-0.00065557	-0.86434	-0.00043671	505.2564780555008	21.007	0.26026	20.624	20.494	20.755	-0.38288					9	4	3	0	0	0	0.30262	1	7332	7332		8.5933	0	1	18337000	+		33869	17981	21437	21553	32611	32611					-0.002367781246903178
TLYLDNRIDGP	11	Unmodified	_TLYLDNRIDGP_					0	0	0			REV__DOCK3|p.P1852Qfs*45|14|0.4|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	REV__DOCK3|p.P1852Qfs*45|14|0.4|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	638.830810546875	2	638.830234	1275.64592	0.47655	0.00030443	0.24076	0.0001538	0.71731	0.00045824	638.8305500808063	41.953	0.36391	41.651	41.52	41.884	-0.30257					8	6	2	0	0	0	0.7093	1	15638	15638		18.373	0	1	7149100	+		33870	10401	21438	21554	32612	32612					0.019118633552807296
TLYPNPYHQP	10	Unmodified	_TLYPNPYHQP_					0	0	0		ENST00000493725.1_1_3:188925173-188929450:+|nuORF;ENST00000460613.5_1_3:188925173-188937392:+|nuORF;ENSG00000188001|ENST00000345063|TPRG1	ENST00000493725.1_1_3:188925173-188929450:+|nuORF	ENST00000493725.1_1_3:188925173-188929450:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	614.80029296875	2	615.301113	1228.58767	0.66951	0.00041195	0.4082	0.00025116	1.0777	0.00066311	615.3013738055864	33.167	0.20702	33.167	33.089	33.296	0					5	3	2	0	0	0	0.3029	1	12290	12290		6.7232	6.7232	1	7180200			33871	5967	21439	21555	32613	32613					-0.017477734993462946
TLYSFRSFA	9	Unmodified	_TLYSFRSFA_					0	0	0			REV__ENSG00000237440|ENST00000427401|ZNF737	REV__ENSG00000237440|ENST00000427401|ZNF737	MSMS	HCT116MG_D190212_S4	4	364.52349853515625	3	364.522192	1090.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.455	1	31.085	30.585	31.585	-0.37026								0	0	0	0.76818	1	11417	11417		4.5289	0.58447	1		+		33872	14339	21440	21556	32614	32614					0.003094564432331026
TLYVLLLLL	9	Unmodified	_TLYVLLLLL_					0	0	0			REV__CXCL16|p.Q72Rfs*46|1|0.77|ENSG00000161921|chr17:4738842-4738843|-/C|frameshift_variant	REV__CXCL16|p.Q72Rfs*46|1|0.77|ENSG00000161921|chr17:4738842-4738843|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	354.2384033203125	3	354.238733	1059.69437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.61	1	34.224	33.724	34.724	-0.38558								0	0	0	0.76991	1	12644	12644		1.1933	0	1		+		33873	10316	21441	21557	32615	32615					0.16691008733141643
TLYVLSLP	8	Unmodified	_TLYVLSLP_					0	0	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MSMS	HCT116MG_D190212_S4	4	453.270751953125	2	453.270761	904.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.04	1	55.732	55.232	56.232	-0.3081								0	0	0	0.8837	1	20998	20998		5.7604	0	1				33874	5918	21442	21558	32616	32616					0.0708874118837457
TMADQIVTV	9	Unmodified	_TMADQIVTV_					0	0	0		STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	489.25250244140625	2	489.252243	976.489932	0.28117	0.00013756	0.33847	0.0001656	0.61964	0.00030316	489.2525676446799	45.061	0.20803	45.061	44.931	45.139	0					6	3	2	0	0	0	0.11023	1	17090	17090		56.177	6.244	1	16803000			33875	2511	21443	21559	32617	32617					0.0007470158031992469
TMADQIVTV	9	Unmodified	_TMADQIVTV_					0	0	0		STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	489.2525634765625	2	489.252243	976.489932	0.3362	0.00016449	0.25111	0.00012286	0.58731	0.00028734	489.2522176689691	45.165	0.31371	45.072	44.891	45.205	-0.092472					12	5	3	0	0	0	0.012496	1	17167	17167		107.19	41.952	1	49122000			33876	2511	21443	21559	32618	32618					0.0007470158031992469
TMADQIVTV	9	Unmodified	_TMADQIVTV_					0	0	0		STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	977.4981079101562	1	977.497209	976.489932	0.76684	0.00074959	0.17415	0.00017023	0.94099	0.00091982	977.4972488712308	45.163	0.26203	45.071	44.891	45.153	-0.092472					9	4	3	0	0	0	0.016701	1	17176	17176		99.799	31.718	1	38683000			33877	2511	21443	21559	32619	32619					0.0007470158031992469
TMADQIVTV	9	Unmodified	_TMADQIVTV_					0	0	0		STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant;STXBP3|p.V566Lfs*3|1|0.52|ENSG00000116266|chr1:108808792-108808793|-/TT|frameshift_variant;ENSG00000116266|ENST00000370008|STXBP3	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	STXBP3|p.N527Kfs*17|1|0.2|ENSG00000116266|chr1:108807439-108807440|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	977.497209	976.489932	0.57649	0.00056351	0.19351	0.00018916	0.77	0.00075267	977.4977755593667	45.061	0.20803	45.061	44.931	45.139	0	-0.0051019	1.1885E-05	NaN	99.799	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6881100			33878	2511	21443	21559							0.0007470158031992469
TMAKESSIIGV	11	Unmodified	_TMAKESSIIGV_					0	0	0		nc|ENSG00000116791|Q08257-2|CRYZ;nc|ENSG00000116791|Q08257-3|CRYZ;ENSG00000116791|ENST00000340866|CRYZ	nc|ENSG00000116791|Q08257-2|CRYZ	nc|ENSG00000116791|Q08257-2|CRYZ	MULTI-MSMS	HCT116MG_D190212_S2	2	568.3051147460938	2	568.305007	1134.59546	0.44381	0.00025222	-0.38017	-0.00021605	0.063638	3.6166E-05	568.304736823209	40.201	0.26047	40.128	39.945	40.206	-0.072838					7	4	2	0	0	0	0.13358	1	15167	15167		83.278	35.546	1	30006000			33879	2540	21444	21560	32620	32620					0.03354617705917917
TMAKESSIIGV	11	Unmodified	_TMAKESSIIGV_					0	0	0		nc|ENSG00000116791|Q08257-2|CRYZ;nc|ENSG00000116791|Q08257-3|CRYZ;ENSG00000116791|ENST00000340866|CRYZ	nc|ENSG00000116791|Q08257-2|CRYZ	nc|ENSG00000116791|Q08257-2|CRYZ	MULTI-MATCH	HCT116MG_D190212_S1	1		2	568.305007	1134.59546	0.12083	6.8668E-05	0.80814	0.00045927	0.92897	0.00052794	568.8075149391303	40.15	0.20725	40.15	40.021	40.228	0	0.011313	0.0012495	NaN	83.278	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3221700			33880	2540	21444	21560							0.03354617705917917
TMDDCCAACT	10	Unmodified	_TMDDCCAACT_					0	0	0			REV__DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant	REV__DEAF1|p.F297Lfs*18|1|0.13|ENSG00000177030|chr11:681069-681069|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	517.1597900390625	2	517.158313	1032.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.936	1	62.807	62.307	63.307	-0.12924								0	0	0	0.96937	1	24400	24400		0.40072	0.40072	1		+		33881	10351	21445	21561	32621	32621					-0.21278564002454914
TMDNPTTTQY	10	Oxidation (M)	_TM(Oxidation (M))DNPTTTQY_		TM(1)DNPTTTQY		TM(91)DNPTTTQY	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	HCT116MG_D190212_S1	1	594.2482299804688	2	594.247886	1186.48122	0.50989	0.000303	-0.12754	-7.5792E-05	0.38234	0.00022721	594.2478905290889	25.081	0.36676	25.081	24.882	25.249	0					10	6	2	0	0	0	0.044769	1	9047	9047		91.085	59.816	1	13289000			33882	2922	21446	21562	32622	32622		66			-0.10456316846830305
TMDNPTTTQY	10	Oxidation (M)	_TM(Oxidation (M))DNPTTTQY_		TM(1)DNPTTTQY		TM(57)DNPTTTQY	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	HCT116MG_D190212_S2	2	594.2484130859375	2	594.247886	1186.48122	0.64039	0.00038055	0.07183	4.2685E-05	0.71222	0.00042323	594.2480442268414	25.398	0.52131	25.026	24.767	25.288	-0.3723					19	9	3	0	0	0	0.22442	1	9143	9143		57.249	37.887	1	27281000			33883	2922	21446	21562	32623	32623		66			-0.10456316846830305
TMDNPTTTQY	10	Oxidation (M)	_TM(Oxidation (M))DNPTTTQY_		TM(1)DNPTTTQY		TM(57)DNPTTTQY	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	HCT116MG_D190212_S3	3	594.2481079101562	2	594.247886	1186.48122	0.70265	0.00041755	-0.69746	-0.00041447	0.0051871	3.0824E-06	594.2472924018396	25.352	0.31227	25.246	25.048	25.36	-0.10618					9	5	2	0	0	0	0.22442	1	9056	9056		57.249	40.136	1	6103100			33884	2922	21446	21562	32624	32624		66			-0.10456316846830305
TMDNPTTTQY	10	Unmodified	_TMDNPTTTQY_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	HCT116MG_D190212_S1	1	586.2504272460938	2	586.250428	1170.4863	0.53808	0.00031545	-0.43348	-0.00025413	0.1046	6.1322E-05	586.7517723345618	30.126	0.61026	30.126	29.841	30.451	0					17	11	2	0	0	0	0.025294	1	11043	11043		110.79	75.861	1	20090000			33885	2922	21446	21563	32625	32625					-0.09212012984221474
TMDNPTTTQY	10	Unmodified	_TMDNPTTTQY_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	HCT116MG_D190212_S1	1	1171.4935302734375	1	1171.49358	1170.4863	0.58435	0.00068457	-0.41409	-0.0004851	0.17027	0.00019947	1171.493131957052	30.126	0.29863	30.126	29.997	30.296	0					7	5	2	0	0	0	0.0163	1	11060	11060		128.93	68.859	1	8433800			33886	2922	21446	21563	32626	32626					-0.09212012984221474
TMDNPTTTQY	10	Unmodified	_TMDNPTTTQY_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	HCT116MG_D190212_S2	2	586.25	2	586.250428	1170.4863	0.23662	0.00013872	0.066921	3.9232E-05	0.30354	0.00017795	586.2504441891423	30.338	0.7198	30.054	29.615	30.335	-0.28453					29	13	3	0	0	0	0.044769	1	11126	11126		91.085	52.909	1	121560000			33887	2922	21446	21563	32627	32627					-0.09212012984221474
TMDNPTTTQY	10	Unmodified	_TMDNPTTTQY_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	HCT116MG_D190212_S2	2	1171.493896484375	1	1171.49358	1170.4863	0.17583	0.00020599	0.18731	0.00021944	0.36315	0.00042542	1171.4949757177058	30.361	0.36012	30.076	29.822	30.182	-0.28453					13	6	3	0	0	0	0.005658	1	11154	11154		165.72	96.615	1	42974000			33888	2922	21446	21563	32628	32628					-0.09212012984221474
TMDNPTTTQY	10	Unmodified	_TMDNPTTTQY_					0	0	0		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	HCT116MG_D190212_S3	3	586.2498779296875	2	586.250428	1170.4863	0.43468	0.00025483	0.075711	4.4386E-05	0.51039	0.00029922	586.7521045573183	30.513	0.45196	30.264	30.112	30.564	-0.24946					24	21	2	0	0	0	0.099369	1	11093	11093		74.2	50.179	1	18849000			33889	2922	21446	21563	32629	32629					-0.09212012984221474
TMEGGTLKY	9	Unmodified	_TMEGGTLKY_					0	0	0		ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.T943Pfs*5|1|0.19|ENSG00000197943|chr16:81934513-81934513|A/-|frameshift_variant;ENSG00000197943|ENST00000564138|PLCG2	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	500.24517822265625	2	500.244418	998.474282	0.35155	0.00017586	-0.0072604	-3.632E-06	0.34429	0.00017223	500.244515624861	32.302	0.2598	32.072	31.942	32.202	-0.23009					6	4	2	0	0	0	0.29516	1	11961	11961		31.268	5.869	1	13525000			33890	6188	21447	21564	32630	32630					-0.025015849367491683
TMEGGTLKY	9	Unmodified	_TMEGGTLKY_					0	0	0		ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.T943Pfs*5|1|0.19|ENSG00000197943|chr16:81934513-81934513|A/-|frameshift_variant;ENSG00000197943|ENST00000564138|PLCG2	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENST00000567980.5_1_16:81819579-81955027:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	500.244418	998.474282	0.24332	0.00012172	0.0071146	3.559E-06	0.25044	0.00012528	500.24436070480755	32.04	0.15652	32.04	31.961	32.118	0	-0.016311	1.3384E-06	NaN	31.268	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3569700			33891	6188	21447	21564							-0.025015849367491683
TMEPDSRPEL	10	Unmodified	_TMEPDSRPEL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MSMS	HCT116MG_D190212_S1	1	392.18463134765625	3	392.185139	1173.53359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.781	1	35.781	35.281	36.281	0								0	0	0	0.92272	1	13321	13321		6.1918	0	1				33892	3433	21448	21565	32631	32631					-0.04623733713196998
TMEPDSRPEL	10	Unmodified	_TMEPDSRPEL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MSMS	HCT116MG_D190212_S1	1	392.18499755859375	3	392.185139	1173.53359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.191	1	37.191	36.691	37.691	0								0	0	0	0.92272	1	13887	13887		6.1918	0	1				33893	3433	21448	21565	32632	32632					-0.04623733713196998
TMFICCSPSSY	11	Unmodified	_TMFICCSPSSY_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A	ENSG00000155980|ENST00000455537|KIF5A	ENSG00000155980|ENST00000455537|KIF5A	MULTI-MSMS	HCT116MG_D190212_S2	2	619.7495727539062	2	619.748153	1237.48175	-0.032231	-1.9975E-05	2.1343	0.0013227	2.1021	0.0013028	619.7490931407393	18.57	0.2077	18.207	18.113	18.321	-0.36325					5	3	2	0	0	0	0.54229	1	6416	6416		41.84	16.849	1	8120700			33894	4270	21449	21566	32633	32633					-0.12748936722982762
TMFRNIYSL	9	Unmodified	_TMFRNIYSL_					0	0	0			REV__ENSG00000153814|ENST00000283928|JAZF1	REV__ENSG00000153814|ENST00000283928|JAZF1	MSMS	HCT116MG_D190212_S1	1	382.19708251953125	3	382.198831	1143.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.271	1	34.271	33.771	34.771	0								0	0	0	0.76077	1	12710	12710		16.149	6.0752	1		+		33895	12659	21450	21567	32634	32634					0.008620721169108947
TMGPRIQP	8	Unmodified	_TMGPRIQP_					0	0	0			REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	450.2419738769531	2	450.242012	898.469472	0.25742	0.0001159	0.32592	0.00014674	0.58335	0.00026265	450.24229173700553	22.514	0.20729	22.128	21.999	22.206	-0.3852					6	3	2	0	0	0	0.69862	1	8010	8010		23.148	1.4018	1	8071200	+		33896	10050	21451	21568	32635	32635					0.016175757111682287
TMGPRIQP	8	Unmodified	_TMGPRIQP_					0	0	0			REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	450.242012	898.469472	0.25742	0.0001159	0.32592	0.00014674	0.58335	0.00026265	450.24229173700553	22.514	0.20729	22.128	21.999	22.206	-0.3852	0.12015	6.4623E-05	NaN	23.148	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8071200	+		33897	10050	21451	21568							0.016175757111682287
TMGPRIQP	8	Unmodified	_TMGPRIQP_					0	0	0			REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	REV__BPTF|p.K2718Nfs*36|3|0.12|ENSG00000171634|chr17:67948150-67948150|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	450.242012	898.469472	0.079014	3.5575E-05	0.24151	0.00010874	0.32052	0.00014431	450.2422120153026	21.887	0.26057	21.888	21.729	21.99	0.00074577	-0.12015	-1.1391E-05	NaN	23.148	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1001200	+		33898	10050	21451	21568							0.016175757111682287
TMKLLNRLN	9	Unmodified	_TMKLLNRLN_					0	0	0			REV__ENST00000466974.5_1_20:5925482-5925524:-|nuORF	REV__ENST00000466974.5_1_20:5925482-5925524:-|nuORF	MSMS	HCT116MG_D190212_S3	3	368.2176208496094	3	368.218226	1101.63285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.825	1	37.524	37.024	38.024	-0.30137								0	0	0	0.76948	1	13997	13997		2.7352	0.82882	1		+		33899	15832	21452	21569	32636	32636					0.08609753762220862
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant;CSPG4|p.G245Afs*98|1|0.18|ENSG00000173546|chr15:75690331-75690331|C/-|frameshift_variant;CSPG4|p.G443Afs*16|1|0.15|ENSG00000173546|chr15:75689737-75689737|C/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	HCT116MG_D190212_S2	2	467.2626953125	2	467.262945	932.511337	0.31983	0.00014945	-0.26933	-0.00012585	0.050507	2.36E-05	467.2626802494415	40.887	0.20756	40.818	40.673	40.881	-0.069626					5	3	2	0	0	0	0.20521	1	15457	15457		40.725	17.989	1	14305000			33900	5292	21453	21570	32637	32637					0.042381313996770587
TMNRVVETV	9	Unmodified	_TMNRVVETV_					0	0	0			REV__nc|ENSG00000133475|P36268-2|GGT2P	REV__nc|ENSG00000133475|P36268-2|GGT2P	MSMS	HCT116MG_D190212_S1	1	350.1861877441406	3	350.186703	1047.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.209	1	27.209	26.709	27.709	0								0	0	0	0.768	1	9863	9863		4.897	0	1		+		33901	11058	21454	21571	32638	32638					0.01641195220213376
TMNRVVETV	9	Unmodified	_TMNRVVETV_					0	0	0			REV__nc|ENSG00000133475|P36268-2|GGT2P	REV__nc|ENSG00000133475|P36268-2|GGT2P	MSMS	HCT116MG_D190212_S2	2	350.1861267089844	3	350.186703	1047.53828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.465	1	27.123	26.623	27.623	-0.34201								0	0	0	0.71969	1	9977	9977		12.241	4.0851	1		+		33902	11058	21454	21571	32639	32639					0.01641195220213376
TMQVKAFND	9	Unmodified	_TMQVKAFND_					0	0	0		tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	526.7844848632812	2	527.255317	1052.49608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.999	1	38.914	38.414	39.414	-0.084618								0	0	0	0.69431	1	14664	14664		19.362	1.227	1				33903	18408	21455	21572	32640	32640					-0.02806780188166158
TMRRKRRRKMW	11	Unmodified	_TMRRKRRRKMW_					0	0	0			REV__ENST00000456150.5_1_3:47618647-47618728:-|nuORF	REV__ENST00000456150.5_1_3:47618647-47618728:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	536.1658935546875	3	535.645279	1603.91401	0.47648	0.00025522	0.3579	0.00019171	0.83438	0.00044693	535.9800765026596	55.3	0.35622	55.3	55.044	55.4	0					8	6	2	0	0	0	0.36631	1	21252	21252		0.094841	0.094841	1	9832600	+		33904	15748	21456	21573	32641	32641					0.13620605920891649
TNAAIYEVGTV	11	Unmodified	_TNAAIYEVGTV_					0	0	0			REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	379.8642578125	3	379.864394	1136.57135	0.036574	1.3893E-05	-0.048247	-1.8327E-05	-0.011673	-4.434E-06	379.86427290011596	27.783	0.25989	27.595	27.465	27.725	-0.18847					10	4	3	0	0	0	0.69138	1	10052	10052		15.538	0	1	18393000	+		33905	17970	21457	21574	32642	32642					0.008531005438953798
TNAAIYEVGTV	11	Unmodified	_TNAAIYEVGTV_					0	0	0			REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	REV__tr|U7T4S4|U7T4S4_FUSNUCelldivisionproteinFtsZOS=FusobacteriumnucleatumCTI-5OX=1316586GN=ftsZPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	379.86444091796875	3	379.864394	1136.57135	0.035148	1.3352E-05	-0.031354	-1.191E-05	0.003794	1.4412E-06	379.86431009720445	28.057	0.20781	27.726	27.596	27.804	-0.33138					5	3	2	0	0	0	0.70662	1	10082	10082		15.538	4.6395	1	3305200	+		33906	17970	21457	21574	32643	32643					0.008531005438953798
TNAIFITV	8	Unmodified	_TNAIFITV_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	HCT116MG_D190212_S2	2	878.4982299804688	1	878.498195	877.490919	0.76216	0.00066956	-0.70803	-0.000622	0.054134	4.7557E-05	878.4976959745135	53.903	0.30925	53.713	53.532	53.842	-0.1894					9	5	2	0	0	0	0.26254	1	20743	20743		62.573	2.1831	1	40669000			33907	2990	21458	21575	32644	32644					0.047272840115169856
TNAIFITV	8	Unmodified	_TNAIFITV_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	878.498195	877.490919	0.82728	0.00072677	-0.56968	-0.00050047	0.2576	0.0002263	878.497788978857	53.642	0.20641	53.642	53.514	53.72	0	-0.035589	4.5585E-05	NaN	62.573	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16834000			33908	2990	21458	21575							0.047272840115169856
TNAILVTRKML	11	Unmodified	_TNAILVTRKML_					0	0	0			REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	REV__tr|U7SLP8|U7SLP8_FUSNUV-typeATPsynthasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpAPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	630.38232421875	2	630.37884	1258.74313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.809	1	42.739	42.239	43.239	-0.069984								0	0	0	0.49807	1	16213	16213		47.594	11.088	1		+		33909	17709	21459	21576	32645	32645					0.12410554030566345
TNALIAVW	8	Unmodified	_TNALIAVW_					0	0	0		ENSG00000120458|ENST00000374979|MSANTD2;nc|ENSG00000120458|Q6P1R3-3|MSANTD2	ENSG00000120458|ENST00000374979|MSANTD2	ENSG00000120458|ENST00000374979|MSANTD2	MULTI-SECPEP	HCT116MG_D190212_S3	3	444.2456359863281	2	444.252903	886.491253	0.28593	0.00012702	-0.10794	-4.7955E-05	0.17798	7.907E-05	444.25271917073405	48.447	0.26043	48.131	47.932	48.192	-0.31596					7	4	2	0	0	0	0.33109	1	18224	18224		0.6015	0.6015	1	1971600			33910	2699	21460	21577	32646	32646					0.043467037313689616
TNDDTIDFDY	10	Unmodified	_TNDDTIDFDY_					0	0	0		ENSG00000118849|ENST00000237696|RARRES1	ENSG00000118849|ENST00000237696|RARRES1	ENSG00000118849|ENST00000237696|RARRES1	MULTI-MSMS	HCT116MG_D190212_S1	1	609.4424438476562	2	609.74349	1217.47243	0.61431	0.00037457	-3.1556	-0.0019241	-2.5413	-0.0015495	609.7420905888248	20.485	0.26041	20.485	20.383	20.644	0					5	4	2	0	0	0	0.83158	1	7150	7150		9.3831	1.2276	1	2818900			33911	2616	21461	21578	32647	32647					-0.1276096721162503
TNDKIINLPV	10	Unmodified	_TNDKIINLPV_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	HCT116MG_D190212_S2	2	563.828125	2	563.826963	1125.63937	0.5564	0.00031372	0.97327	0.00054876	1.5297	0.00086247	563.8277064858983	24.489	0.26055	24.108	23.926	24.187	-0.38003					6	4	2	0	0	0	0.71349	1	8808	8808		19.257	2.1441	1	11033000			33912	1424	21462	21579	32648	32648					0.08157970194565678
TNDKKQIVIP	10	Unmodified	_TNDKKQIVIP_					0	0	0		tr|U7SUZ3|U7SUZ3_FUSNUYokE-likePHdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01062PE=4SV=1	tr|U7SUZ3|U7SUZ3_FUSNUYokE-likePHdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01062PE=4SV=1	tr|U7SUZ3|U7SUZ3_FUSNUYokE-likePHdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01062PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	578.3382568359375	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.766	1	33.476	32.976	33.976	-0.29013								0	0	0	0.94551	1	12405	12405		5.7319	1.4026	1				33913	18483	21463	21580	32649	32649					0.09477659085882806
TNDTEKED	8	Unmodified	_TNDTEKED_					0	0	0			REV__FGFR1|p.E137D|1|0.38|ENSG00000077782|chr8:38428383-38428383|C/A|missense_variant	REV__FGFR1|p.E137D|1|0.38|ENSG00000077782|chr8:38428383-38428383|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	476.198486328125	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7495	1	6.7634	6.2634	7.2634	0.013901								0	0	0	0.8837	1	2040	2040		2.3027	0	1		+		33914	16821	21464	21581	32650	32650					-0.09429177100378183
TNEAKKGRCY	10	Unmodified	_TNEAKKGRCY_					0	0	0		CLCN3|p.R311Gfs*14|4|0.22|ENSG00000109572|chr4:169692309-169692309|A/-|frameshift_variant	CLCN3|p.R311Gfs*14|4|0.22|ENSG00000109572|chr4:169692309-169692309|A/-|frameshift_variant	CLCN3|p.R311Gfs*14|4|0.22|ENSG00000109572|chr4:169692309-169692309|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	585.2886962890625	2	585.290222	1168.56589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.135	1	38.135	37.635	38.635	0								0	0	0	0.92917	1	14269	14269		9.3831	0.78985	1				33915	473	21465	21582	32651	32651					-0.011649015195416723
TNESCFDSFY	10	Unmodified	_TNESCFDSFY_					0	0	0			REV__chr8:127339435-127398893|361|10.36|0.65|4.0|+|2|POU5F1B,PCAT1|1	REV__chr8:127339435-127398893|361|10.36|0.65|4.0|+|2|POU5F1B,PCAT1|1	MULTI-MSMS	HCT116MG_D190212_S2	2	607.23046875	2	606.729329	1211.4441	0.20491	0.00012432	-0.43387	-0.00026324	-0.22896	-0.00013892	606.7290759502158	18.624	0.41619	18.26	18.113	18.529	-0.36325					11	7	2	0	0	0	0.71349	1	6455	6455		19.257	3.4098	1	17033000	+		33916	10189	21466	21583	32652	32652					-0.15315988392580948
TNESCFDSFY	10	Unmodified	_TNESCFDSFY_					0	0	0			REV__chr8:127339435-127398893|361|10.36|0.65|4.0|+|2|POU5F1B,PCAT1|1	REV__chr8:127339435-127398893|361|10.36|0.65|4.0|+|2|POU5F1B,PCAT1|1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	606.729329	1211.4441	0.50008	0.00030342	-0.81249	-0.00049296	-0.31241	-0.00018955	606.7288351711228	18.219	0.31287	18.219	18.089	18.402	0	-0.020552	-9.4975E-05	NaN	19.257	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12768000	+		33917	10189	21466	21583							-0.15315988392580948
TNEVEIRYVDY	11	Unmodified	_TNEVEIRYVDY_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	HCT116MG_D190212_S3	3	701.3399047851562	2	700.838256	1399.66196	0.97758	0.00068512	-0.62187	-0.00043583	0.35571	0.00024929	701.3394172574192	46.065	0.2394	45.753	45.563	45.802	-0.31237					12	5	3	0	0	0	0.67406	1	17262	17262		27.223	0.95509	1	24154000			33918	2723	21467	21584	32653	32653					-0.021884751984771356
TNFYGMGL	8	Unmodified	_TNFYGMGL_					0	0	0		ENST00000442655.2_1_4:9032265-9032511:+|nuORF	ENST00000442655.2_1_4:9032265-9032511:+|nuORF	ENST00000442655.2_1_4:9032265-9032511:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	902.4082641601562	1	902.407666	901.400389	0.826	0.00074539	0.15663	0.00014134	0.98263	0.00088673	902.4078042312906	45.42	0.26109	45.109	44.992	45.253	-0.31094					6	4	2	0	0	0	0.64404	1	17030	17030		28.487	3.813	1	3753500			33919	7934	21468	21585	32654	32654					-0.05425508308383087
TNIGAIFA	8	Unmodified	_TNIGAIFA_					0	0	0		nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MSMS	HCT116MG_D190212_S2	2	403.7236633300781	2	403.723978	805.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.875	1	35.747	35.247	36.247	-0.12799								0	0	0	0.27832	1	13397	13397		57.471	2.6978	1				33920	2727	21469	21586	32655	32655					0.022904418059511045
TNKIRSSR	8	Unmodified	_TNKIRSSR_					0	0	0			REV__ADAT1|p.G358Rfs*17|1|0.13|ENSG00000065457|chr16:75608960-75608961|-/T|frameshift_variant;REV__ENST00000566445.5_1_16:75642811-75646269:-|nuORF	REV__ADAT1|p.G358Rfs*17|1|0.13|ENSG00000065457|chr16:75608960-75608961|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	481.28045654296875	2	481.280515	960.546476	0.28621	0.00013775	-0.11173	-5.3775E-05	0.17447	8.3971E-05	481.28057790052605	46.33	0.41292	46.33	46.13	46.543	0					10	7	2	0	0	0	0.85789	1	17582	17582		3.9444	1.6417	1	6662000	+		33921	9864;16545	21470	21587	32656	32656					0.06462510251856202
TNKLNDTFFSN	11	Unmodified	_TNKLNDTFFSN_					0	0	0			REV__tr|U7SSS5|U7SSS5_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01361PE=3SV=1	REV__tr|U7SSS5|U7SSS5_FUSNUCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01361PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	650.8126220703125	2	650.812042	1299.60953	0.94841	0.00061723	-0.10927	-7.1113E-05	0.83914	0.00054612	650.8118512126576	28.929	0.36555	28.929	28.746	29.112	0					19	6	4	0	0	0	0.63066	1	10556	10556		32.037	0.76914	1	71951000	+		33922	17777	21471	21588	32657	32657					-0.028290135413953976
TNKLNRKRP	9	Unmodified	_TNKLNRKRP_					0	0	0			REV__ENST00000439974.3_1_10:33247495-33247750:-|nuORF	REV__ENST00000439974.3_1_10:33247495-33247750:-|nuORF	MSMS	HCT116MG_D190212_S4	4	376.23284912109375	3	376.231634	1125.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.78	1	58.497	57.997	58.997	-0.28305								0	0	0	0.77012	1	22102	22102		0.20686	0	1		+		33923	15639	21472	21589	32658	32658					0.11526436476992785
TNLDPLQEQ	9	Unmodified	_TNLDPLQEQ_					0	0	0			REV__ENST00000597440.5_1_19:7913809-7917719:+|nuORF	REV__ENST00000597440.5_1_19:7913809-7917719:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	529.2492065429688	2	529.261653	1056.50875	-0.10807	-5.72E-05	0.008268	4.376E-06	-0.099806	-5.2824E-05	529.2613898858114	16.644	0.25612	16.478	16.351	16.608	-0.16664					6	4	2	0	0	0	0.30117	1	5506	5506		30.637	1.555	1	1014000	+		33924	12354	21473	21590	32659	32659					-0.017240455242927055
TNLFMVTI	8	Unmodified	_TNLFMVTI_					0	0	0			REV__ENST00000296802.9_1_5:74072492-74072618:+|nuORF	REV__ENST00000296802.9_1_5:74072492-74072618:+|nuORF	MSMS	HCT116MG_D190212_S1	1	469.6057434082031	2	469.754421	937.494289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.585	1	22.585	22.085	23.085	0								0	0	0	0.72655	1	8003	8003		28.487	3.0875	1		+		33925	14764	21474	21591	32660	32660					0.02304210793886341
TNPTTRRNAK	10	Unmodified	_TNPTTRRNAK_					0	0	0		DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	579.7589721679688	2	579.820535	1157.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.681	1	15.681	15.181	16.181	0								0	0	0	0.94345	1	5226	5226		3.5965	0	1				33926	731	21475	21592	32661	32661					0.05400951855017411
TNRRIILLI	9	Unmodified	_TNRRIILLI_					0	0	0		tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	tr|U7SL74|U7SL74_FUSNUABCtransporterpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02004PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	556.3697509765625	2	556.369133	1110.72371	0.40882	0.00022745	0.22428	0.00012478	0.6331	0.00035224	556.3691389335263	60.119	1.3898	59.964	59.441	60.83	-0.15441					52	26	3	0	0	0	0.76704	1	23379	23379		0.6015	0	1	50034000			33927	18333	21476	21593	32662	32662					0.1727796580200902
TNRRRGRLRWF	11	Unmodified	_TNRRRGRLRWF_					0	0	0		CACNA1F|p.G604Afs*3|1|0.21|ENSG00000102001|chrX:49224860-49224860|C/-|frameshift_variant;nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F	CACNA1F|p.G604Afs*3|1|0.21|ENSG00000102001|chrX:49224860-49224860|C/-|frameshift_variant	CACNA1F|p.G604Afs*3|1|0.21|ENSG00000102001|chrX:49224860-49224860|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	759.9390869140625	2	759.437267	1516.85998	1.0509	0.00079813	0.54961	0.0004174	1.6006	0.0012155	759.9396856286966	59.346	0.28667	59.186	59.025	59.312	-0.16012					25	11	3	0	0	0	0.74191	2	22932	22932;22953		0	0	1	793480			33928	306	21477	21594	32663;32664	32663					0.12222473085216734
TNSDHRRFRD	10	Unmodified	_TNSDHRRFRD_					0	0	0		nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G	nc|ENSG00000139144|O75747-2|PIK3C2G	nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-MSMS	HCT116MG_D190212_S1	1	652.316650390625	2	652.316148	1302.61774	0.73501	0.00047946	0.97669	0.00063711	1.7117	0.0011166	652.3164348699104	31.747	0.36499	31.747	31.544	31.909	0					11	6	3	0	0	0	0.71349	1	11695	11695		19.257	2.1441	1	5352100			33929	3600	21478	21595	32665	32665					-0.021460217814365024
TNSNHLVY	8	Unmodified	_TNSNHLVY_					0	0	0			REV__ENSG00000175166|ENST00000310118|PSMD2	REV__ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	HCT116MG_D190212_S1	1	474.2330322265625	2	474.232699	946.450845	0.24066	0.00011413	0.20938	9.9297E-05	0.45004	0.00021343	474.2328853051594	31.727	0.46927	31.727	31.492	31.961	0					13	8	2	0	0	0	0.62424	1	11685	11685		30.225	0	1	14258000	+		33930	13505	21479	21596	32666	32666					-0.024522626590396612
TNSSTPSSV	9	Unmodified	_TNSSTPSSV_					0	0	0			REV__SPECC1|p.N303Hfs*14|1|0.23|ENSG00000128487|chr17:20204950-20204951|AA/-|frameshift_variant	REV__SPECC1|p.N303Hfs*14|1|0.23|ENSG00000128487|chr17:20204950-20204951|AA/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	880.41650390625	1	879.405417	878.39814	0.70225	0.00061756	2.6272	0.0023104	3.3295	0.0029279	879.4058907710308	22.828	0.7167	22.809	22.283	22.999	-0.018869					19	13	3	0	0	0	0.1754	1	8026	8026		43.858	0	1	9972300	+		33931	11874	21480	21597	32667	32667					-0.045922655124968514
TNTNSDILPPQ	11	Unmodified	_TNTNSDILPPQ_					0	0	0		EME1|p.K187N|1|0.31|ENSG00000154920|chr17:50375769-50375769|A/C|missense_variant	EME1|p.K187N|1|0.31|ENSG00000154920|chr17:50375769-50375769|A/C|missense_variant	EME1|p.K187N|1|0.31|ENSG00000154920|chr17:50375769-50375769|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	600.2988891601562	2	600.298767	1198.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.16	1	22.16	21.66	22.66	0.00074577								0	0	0	0.93456	1	7760	7760		14.405	1.3629	1				33932	776	21481	21598	32668	32668					-0.008367024327526451
TNVGSIRIYFD	11	Unmodified	_TNVGSIRIYFD_					0	0	0		ENST00000473770.5_1_22:32015600-32017204:-|nuORF;ENST00000460723.5_1_22:32015600-32017569:-|nuORF;nc|ENSG00000241878|Q9UG56-2|PISD;ENSG00000241878|ENST00000439502|PISD	ENST00000473770.5_1_22:32015600-32017204:-|nuORF	ENST00000473770.5_1_22:32015600-32017204:-|nuORF	MSMS	HCT116MG_D190212_S1	1	429.088623046875	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.1015	1	5.1015	4.6015	5.6015	0								0	0	0	0.9619	1	1533	1533		0.094841	0	1				33933	6547	21482	21599	32669	32669					0.020521672179029338
TNWSTTSEC	9	Unmodified	_TNWSTTSEC_					0	0	0		ZIC3|p.R304Gfs*104|1|0.17|ENSG00000156925|chrX:137567597-137567597|C/-|frameshift_variant	ZIC3|p.R304Gfs*104|1|0.17|ENSG00000156925|chrX:137567597-137567597|C/-|frameshift_variant	ZIC3|p.R304Gfs*104|1|0.17|ENSG00000156925|chrX:137567597-137567597|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1028.3995361328125	1	1028.39895	1027.39167	0.33603	0.00034557	0.11033	0.00011346	0.44636	0.00045904	1028.3986465216155	40.044	0.31142	39.971	39.79	40.102	-0.072838					8	5	2	0	0	0	0.55223	1	15100	15100		13.906	2.2658	1	9498500			33934	18715	21483	21600	32670	32670					-0.12092526735546016
TPAAFFKPP	9	Unmodified	_TPAAFFKPP_					0	0	0			REV__HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|12|2|sense	REV__HERVH-int_dup4763|chr13:43060101-43060646:-|1.1455265893349995|0.1694828300693424|2.76|471.0|12|2|sense	MSMS	HCT116MG_D190212_S3	3	488.2705383300781	2	488.268553	974.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.256	1	29.034	28.534	29.534	-0.22195								0	0	0	0.76694	1	10621	10621		11.64	1.4569	1		+		33935	16883	21484	21601	32671	32671					0.03427276765467013
TPAALFHPLGL	11	Unmodified	_TPAALFHPLGL_					0	0	0			REV__ENST00000574767.5_1_17:78519031-78519253:+|nuORF	REV__ENST00000574767.5_1_17:78519031-78519253:+|nuORF	MSMS	HCT116MG_D190212_S2	2	568.8267211914062	2	568.826766	1135.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.986	1	48.832	48.332	49.332	-0.15405								0	0	0	0.8787	1	18733	18733		22.736	4.5899	1		+		33936	16592	21485	21602	32672	32672					0.07658595265365875
TPALGAHY	8	Unmodified	_TPALGAHY_					0	0	0			REV__ENST00000468920.2_1_12:111893805-111895209:-|nuORF	REV__ENST00000468920.2_1_12:111893805-111895209:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	829.4217529296875	1	829.420279	828.413003	0.94219	0.00078147	0.18528	0.00015367	1.1275	0.00093515	829.4203401155078	24.489	0.20848	24.108	23.979	24.187	-0.38003					5	3	2	0	0	0	0.71835	1	8793	8793		20.871	0	1	10930000	+		33937	14208	21486	21603	32673	32673					-0.008067288538654793
TPDIDIHGPEG	11	Unmodified	_TPDIDIHGPEG_					0	0	0		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	575.7725219726562	2	575.772385	1149.53022	0.5409	0.00031143	-0.34021	-0.00019588	0.20069	0.00011555	575.7720413426872	26.852	1.3543	26.7	25.836	27.19	-0.15133					46	25	2	0	0	0	0.69464	1	9486	9486		23.79	2.2528	1	6682300			33938	82	21487	21604	32674	32674					-0.03856660495557662
TPDIDIHGPEG	11	Unmodified	_TPDIDIHGPEG_					0	0	0		AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	AHNAK|p.K5709Sfs*35|1|0.22|ENSG00000124942|chr11:62517291-62517291|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	575.7889404296875	2	575.772385	1149.53022	0.39469	0.00022725	-0.26031	-0.00014988	0.13437	7.7368E-05	575.7720356524552	26.507	1.3511	26.206	25.869	27.221	-0.30087					60	25	3	0	0	0	0.69749	1	9538	9538		22.736	5.6234	1	6358400			33939	82	21487	21604	32675	32675					-0.03856660495557662
TPDMCDVEECS	11	Unmodified	_TPDMCDVEECS_					0	0	0			REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	REV__TENM4|p.R2689Gfs*41|1|0.3|ENSG00000149256|chr11:78658303-78658303|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	614.7119140625	2	614.711964	1227.40938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.298	1	18.298	17.798	18.798	0								0	0	0	0.94755	1	6281	6281		7.609	1.4032	1		+		33940	12560	21488	21605	32676	32676					-0.19523315587184698
TPDPSALASQ	10	Unmodified	_TPDPSALASQ_					0	0	0		AluSx3_dup29942|chr19:41728513-41728808:+|2.044018751923101|0.0786573993334847|4.7|480.0|13|1|anti-sense	AluSx3_dup29942|chr19:41728513-41728808:+|2.044018751923101|0.0786573993334847|4.7|480.0|13|1|anti-sense	AluSx3_dup29942|chr19:41728513-41728808:+|2.044018751923101|0.0786573993334847|4.7|480.0|13|1|anti-sense	MULTI-MSMS	HCT116MG_D190212_S2	2	493.7427062988281	2	493.743096	985.47164	0.17944	8.8598E-05	0.17576	8.6781E-05	0.3552	0.00017538	493.74304307790305	11.698	0.38655	11.417	11.298	11.684	-0.28186					25	15	2	0	0	0	0.86862	1	3765	3765		6.2058	0.9089	1	568410			33941	113	21489	21606	32677	32677					-0.02167717070051367
TPDVSSALDK	10	Unmodified	_TPDVSSALDK_					0	0	0		ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	516.7635498046875	2	516.764029	1031.5135	0.57632	0.00029782	-0.56658	-0.00029279	0.0097377	5.0321E-06	516.7636887436624	29.243	0.41767	29.243	28.955	29.373	0					9	7	2	0	0	0	0.13746	1	10709	10709		66.683	40.415	1	8278700			33942	3064	21490	21607	32678	32678					-0.0009916138151311316
TPDVSSALDK	10	Unmodified	_TPDVSSALDK_					0	0	0		ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	516.76416015625	2	516.764029	1031.5135	0.38709	0.00020004	0.10654	5.5056E-05	0.49363	0.00025509	516.7636716047862	29.607	0.26085	29.37	29.239	29.5	-0.23655					8	4	2	0	0	0	0.055292	1	10788	10788		83.278	48.346	1	5798200			33943	3064	21490	21607	32679	32679					-0.0009916138151311316
TPDVSSALDK	10	Unmodified	_TPDVSSALDK_					0	0	0		ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	ENST00000592176.1_1_19:45418464-45422484:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	516.763916015625	2	516.764029	1031.5135	0.23761	0.00012279	0.034191	1.7669E-05	0.2718	0.00014046	516.7640712408252	29.756	0.31198	29.406	29.241	29.553	-0.34921					8	5	2	0	0	0	0.42802	1	10762	10762		40.239	19.825	1	5121300			33944	3064	21490	21607	32680	32680					-0.0009916138151311316
TPEFQANEVR	10	Unmodified	_TPEFQANEVR_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000485500.1_1_3:49065635-49065977:-|nuORF;ENST00000496837.1_1_3:49065635-49066789:-|nuORF;IMPDH1|p.A247Gfs*7|1|0.06|ENSG00000106348|chr7:128398490-128398491|-/C|frameshift_variant;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	HCT116MG_D190212_S1	1	596.2879638671875	2	595.793652	1189.57275	0.69139	0.00041193	0.10686	6.3667E-05	0.79825	0.00047559	595.7952414254142	46.408	0.46463	46.408	46.079	46.543	0					21	8	4	0	0	0	0.60826	1	17531	17531		27.629	1.3607	1	61348000			33945	5483	21491	21608	32681	32681					-0.01445265367351567
TPEPFHHVV	9	Unmodified	_TPEPFHHVV_					0	0	0		ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	ENSG00000247626|ENST00000282276|MARS2	MSMS	HCT116MG_D190212_S4	4	354.8500061035156	3	354.85042	1061.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.619	1	25.33	24.83	25.83	-0.28931								0	0	0	0.76948	1	9088	9088		2.7352	0.64919	1				33946	6570	21492	21609	32682	32682					0.0011258964605076471
TPEQIEKIY	9	Unmodified	_TPEQIEKIY_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	HCT116MG_D190212_S1	1	560.3070678710938	2	560.797872	1119.58119	0.20714	0.00011616	-0.70572	-0.00039576	-0.49858	-0.0002796	560.7973272636489	39.81	0.20753	39.81	39.709	39.917	0					5	3	2	0	0	0	0.2212	1	14946	14946		28.495	15.452	1	4334000			33947	1467	21493	21610	32683	32683					0.026182885492971764
TPEQIEKIY	9	Unmodified	_TPEQIEKIY_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MULTI-MSMS	HCT116MG_D190212_S2	2	560.7980346679688	2	560.797872	1119.58119	0.17885	0.0001003	-0.49126	-0.0002755	-0.31241	-0.0001752	560.7978942616774	39.853	0.36056	39.781	39.533	39.894	-0.072838					13	6	3	0	0	0	0.12421	1	15031	15031		53.404	15.228	1	31660000			33948	1467	21493	21610	32684	32684					0.026182885492971764
TPEQIEKIY	9	Unmodified	_TPEQIEKIY_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MULTI-MSMS	HCT116MG_D190212_S3	3	560.8973388671875	2	560.797872	1119.58119	0.21841	0.00012248	-1.0923	-0.00061256	-0.87389	-0.00049008	561.298395652026	40.074	0.28922	39.773	39.666	39.955	-0.30137					8	5	3	0	0	0	0.1935	2	14873	14873;14899		41.956	12.874	1	5736900			33949	1467	21493	21610	32685;32686	32685					0.026182885492971764
TPEWRKQYIQY	11	Unmodified	_TPEWRKQYIQY_					0	0	0		XPR1|p.K162Sfs*19|1|0.33|ENSG00000143324|chr1:180806095-180806095|A/-|frameshift_variant;XPR1|p.A557Pfs*7|1|0.34|ENSG00000143324|chr1:180863870-180863870|A/-|frameshift_variant;nc|ENSG00000143324|Q9UBH6-2|XPR1;XPR1|p.L634*|1|0.26|ENSG00000143324|chr1:180880162-180880162|C/-|frameshift_variant;ENSG00000143324|ENST00000367590|XPR1	XPR1|p.K162Sfs*19|1|0.33|ENSG00000143324|chr1:180806095-180806095|A/-|frameshift_variant	XPR1|p.K162Sfs*19|1|0.33|ENSG00000143324|chr1:180806095-180806095|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	756.3897705078125	2	756.385708	1510.75686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.359	1	27.047	26.547	27.547	-0.3114								0	0	0	0.95113	1	9790	9790		5.7319	2.4505	1				33950	3797	21494	21611	32687	32687					0.021915030633863353
TPFGAMVYSP	10	Unmodified	_TPFGAMVYSP_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MSMS	HCT116MG_D190212_S4	4	535.2533569335938	2	535.254785	1068.49502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.418	1	23.17	22.67	23.67	-0.24775								0	0	0	0.90475	1	8198	8198		14.838	3.198	1				33951	1653	21495	21612	32688	32688					-0.036489945570565396
TPFVLRVVQG	10	Unmodified	_TPFVLRVVQG_					0	0	0			REV__ENST00000487292.1_3_15:42132349-42136005:+|nuORF	REV__ENST00000487292.1_3_15:42132349-42136005:+|nuORF	MSMS	HCT116MG_D190212_S1	1	558.7860107421875	2	558.332216	1114.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.29	1	15.29	14.79	15.79	0								0	0	0	0.94551	1	5069	5069		5.7319	0	1		+		33952	14366	21496	21613	32689	32689					0.09713997639642002
TPGHPPPP	8	Unmodified	_TPGHPPPP_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;GBF1|p.D1798Tfs*11|1|0.46|ENSG00000107862|chr10:102382143-102382143|C/-|frameshift_variant;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MSMS	HCT116MG_D190212_S3	3	400.207763671875	2	400.208495	798.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.994	1	25.867	25.367	26.367	-0.12795								0	0	0	0.8837	1	9306	9306		5.7604	0	1				33953	9417	21497	21614	32690	32690					-0.004827115083003264
TPGPVGAP	8	Unmodified	_TPGPVGAP_					0	0	0		COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	695.3734741210938	1	695.372266	694.36499	0.6532	0.00045422	-0.053735	-3.7366E-05	0.59946	0.00041685	695.3719927676351	31.524	0.36383	31.153	30.919	31.283	-0.37026					9	6	2	0	0	0	0.23352	1	11452	11452		67.035	3.4725	1	2282000			33954	528	21498	21615	32691	32691					0.005581972260984003
TPGSSSWPTHS	11	Unmodified	_TPGSSSWPTHS_					0	0	0		nc|ENSG00000174600|Q99788-2|CMKLR1;ENSG00000174600|ENST00000550402|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	MSMS	HCT116MG_D190212_S3	3	572.2573852539062	2	572.256902	1142.49925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.436	1	30.186	29.686	30.686	-0.24946								0	0	0	0.88801	1	11090	11090		21.537	5.6898	1				33955	5339	21499	21616	32692	32692					-0.06629813809809093
TPILRRLKM	9	Unmodified	_TPILRRLKM_					0	0	0		ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	ENST00000589727.5_1_17:40613024-40622135:+|nuORF	MSMS	HCT116MG_D190212_S2	2	564.3589477539062	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.136	1	63.007	62.507	63.507	-0.12924								0	0	0	0.7701	1	24479	24479		0.52476	0	1				33956	9026	21500	21617	32693	32693					0.14258623412865745
TPIPYPYPEV	10	Unmodified	_TPIPYPYPEV_					0	0	0			REV__PRCC|p.E322Nfs*105|1|0.15|ENSG00000143294|chr1:156787047-156787047|C/-|frameshift_variant	REV__PRCC|p.E322Nfs*105|1|0.15|ENSG00000143294|chr1:156787047-156787047|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	588.3032836914062	2	588.30279	1174.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.621	1	48.305	47.805	48.805	-0.31596								0	0	0	0.92607	1	18292	18292		10.074	0	1		+		33957	12380	21501	21618	32694	32694					0.01071476554648143
TPKITVGRRIQ	11	Unmodified	_TPKITVGRRIQ_					0	0	0			REV__ENSG00000180574|ENST00000538173|EIF2S3B	REV__ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MSMS	HCT116MG_D190212_S2	2	634.89306640625	2	634.893503	1267.77245	0.53505	0.0003397	-0.74889	-0.00047547	-0.21384	-0.00013576	634.8927449660133	55.784	0.51529	55.598	55.38	55.895	-0.18565					28	9	4	0	0	0	0.74191	1	21483	21483		2.2828	0.95324	1	86956000	+		33958	13665	21502	21619	32695	32695					0.14927834371087556
TPKITVGRRIQ	11	Unmodified	_TPKITVGRRIQ_					0	0	0			REV__ENSG00000180574|ENST00000538173|EIF2S3B	REV__ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MATCH	HCT116MG_D190212_S1	1		2	634.893503	1267.77245	0.75156	0.00047716	-1.3463	-0.00085477	-0.59476	-0.00037761	634.8924064844024	55.522	0.51302	55.522	55.298	55.811	0	-0.048384	-0.00062234	NaN	2.2828	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14472000	+		33959	13665	21502	21619							0.14927834371087556
TPKITVGRRIQ	11	Unmodified	_TPKITVGRRIQ_					0	0	0			REV__ENSG00000180574|ENST00000538173|EIF2S3B	REV__ENSG00000180574|ENST00000538173|EIF2S3B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	634.893503	1267.77245	0.53505	0.0003397	-0.74889	-0.00047547	-0.21384	-0.00013576	634.8927449660133	55.784	0.51529	55.598	55.38	55.895	-0.18565	0.027771	0.00013627	NaN	2.2828	28	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86956000	+		33960	13665	21502	21619							0.14927834371087556
TPKIVSKA	8	Unmodified	_TPKIVSKA_					0	0	0		UBXN2A|p.T250Nfs*5|1|0.33|ENSG00000173960|chr2:23999829-23999830|-/A|frameshift_variant;ENSG00000173960|ENST00000309033|UBXN2A	UBXN2A|p.T250Nfs*5|1|0.33|ENSG00000173960|chr2:23999829-23999830|-/A|frameshift_variant	UBXN2A|p.T250Nfs*5|1|0.33|ENSG00000173960|chr2:23999829-23999830|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	422.2664794921875	2	422.268553	842.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.709	1	54.519	54.019	55.019	-0.1894								0	0	0	0.8837	1	21070	21070		6.7232	1.9672	1				33961	5314	21503	21620	32696	32696					0.09499276765473041
TPKKKKKKG	9	Unmodified	_TPKKKKKKG_					0	0	0			REV__ENST00000372797.7_2_1:40537910-40537949:+|nuORF	REV__ENST00000372797.7_2_1:40537910-40537949:+|nuORF	MSMS	HCT116MG_D190212_S4	4	521.857177734375	2	521.858401	1041.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.606	1	52.266	51.766	52.766	-0.34023								0	0	0	0.76983	1	19616	19616		1.4819	0.8804	1		+		33962	15179	21504	21621	32697	32697					0.18306580773264614
TPKLALSPLV	10	Unmodified	_TPKLALSPLV_					0	0	0			REV__PHC2|p.A277Qfs*7|1|0.19|ENSG00000134686|chr1:33367264-33367264|A/-|frameshift_variant	REV__PHC2|p.A277Qfs*7|1|0.19|ENSG00000134686|chr1:33367264-33367264|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	520.3328857421875	2	519.831517	1037.64848	0.51926	0.00026993	-0.71813	-0.00037331	-0.19888	-0.00010338	520.3327709195601	52.251	0.67029	52.064	51.677	52.347	-0.18725					25	12	4	0	0	0	0.85886	1	20145	20145		7.1017	1.8048	1	50433000	+		33963	12064	21505	21622	32698	32698					0.13116363550875576
TPKLHTTLLK	10	Unmodified	_TPKLHTTLLK_					0	0	0			REV__ENST00000554674.1_1_14:24799917-24801775:-|nuORF	REV__ENST00000554674.1_1_14:24799917-24801775:-|nuORF	MSMS	HCT116MG_D190212_S3	3	576.3591918945312	2	576.360973	1150.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.708	1	41.405	40.905	41.905	-0.30257								0	0	0	0.95776	1	15515	15515		2.9952	0.93549	1		+		33964	16455	21506	21623	32699	32699					0.1380683984521056
TPKLKLKWK	9	Unmodified	_TPKLKLKWK_					0	0	0		ENST00000561018.5_1_15:41067168-41068598:-|nuORF;ENST00000560065.6_1_15:41066541-41071423:-|nuORF;ENST00000559238.5_1_15:41060140-41072106:-|nuORF;ENSG00000104129|ENST00000220496|DNAJC17	ENST00000561018.5_1_15:41067168-41068598:-|nuORF;ENST00000559238.5_1_15:41060140-41072106:-|nuORF	ENST00000561018.5_1_15:41067168-41068598:-|nuORF	MSMS	HCT116MG_D190212_S2	2	381.2530517578125	3	381.253376	1140.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.145	1	14.818	14.318	15.318	-0.32684								0	0	0	0.76897	1	5011	5011		4.5289	0.93237	1				33965	8813;1917	21507	21624	32700	32700					0.17356037950116843
TPKPLQQLEVP	11	Unmodified	_TPKPLQQLEVP_					0	0	0		nc|ENSG00000052344|Q16651-2|PRSS8;PRSS8|p.Q295Kfs*27|1|0.32|ENSG00000052344|chr16:31132158-31132158|G/-|frameshift_variant;ENSG00000052344|ENST00000317508|PRSS8	nc|ENSG00000052344|Q16651-2|PRSS8	nc|ENSG00000052344|Q16651-2|PRSS8	MULTI-SECPEP	HCT116MG_D190212_S2	2	625.7671508789062	2	625.36117	1248.70779	0.72761	0.00045502	1.8676	0.001168	2.5952	0.001623	625.3615395257196	29.425	0.35838	29.124	28.827	29.185	-0.30096					8	6	2	0	0	0	0.3506	1	10660	10660		16.149	0	1	12221000			33966	1059	21508	21625	32701	32701					0.09338214774425069
TPKPLRRQ	8	Unmodified	_TPKPLRRQ_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MSMS	HCT116MG_D190212_S4	4	498.3102111816406	2	498.309075	994.603597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.936	1	53.607	53.107	54.107	-0.32923								0	0	0	0.8837	1	20152	20152		4.756	0	1				33967	1626	21509	21626	32702	32702					0.1060797752822964
TPKQKIKR	8	Unmodified	_TPKQKIKR_					0	0	0			REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-MSMS	HCT116MG_D190212_S1	1	499.82647705078125	2	499.827101	997.639649	0.28139	0.00014065	-0.1812	-9.0569E-05	0.10019	5.0078E-05	499.82683504793084	60.774	0.51116	60.774	60.646	61.158	0					13	9	2	0	0	0	0.85571	1	23459	23459		4.3292	1.7518	1	43056000	+		33968	11391	21510	21627	32703	32703					0.1407343470507385
TPKRRQLL	8	Unmodified	_TPKRRQLL_					0	0	0			REV__FREM2|p.F2459Lfs*27|1|0.21|ENSG00000150893|chr13:38859443-38859443|T/-|frameshift_variant	REV__FREM2|p.F2459Lfs*27|1|0.21|ENSG00000150893|chr13:38859443-38859443|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	506.3247985839844	2	506.324725	1010.6349	0.48584	0.00024599	-0.11444	-5.7942E-05	0.37141	0.00018805	506.32448682584504	60.753	0.56786	60.605	60.373	60.941	-0.14852					21	10	3	0	0	0	0.85571	1	23524	23524		4.3292	0.73274	1	30317000	+		33969	12588	21511	21628	32704	32704					0.13000550562321678
TPKVHRKRG	9	Unmodified	_TPKVHRKRG_					0	0	0			REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	MULTI-MSMS	HCT116MG_D190212_S1	1	539.8328857421875	2	539.833249	1077.65194	0.34136	0.00018427	-0.91483	-0.00049386	-0.57347	-0.00030958	539.8326566105823	50.085	0.41254	50.085	49.905	50.317	0					16	7	3	0	0	0	0.72399	1	19102	19102		3.5965	0	1	58470000	+		33970	12488	21512	21629	32705	32705					0.1162247116810704
TPKVHRKRG	9	Unmodified	_TPKVHRKRG_					0	0	0			REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	539.833249	1077.65194	0.34136	0.00018427	-0.91483	-0.00049386	-0.57347	-0.00030958	539.8326566105823	50.085	0.41254	50.085	49.905	50.317	0	0	0	NaN	3.5965	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58470000	+		33971	12488	21512	21629							0.1162247116810704
TPKVLTGL	8	Unmodified	_TPKVLTGL_					0	0	0		ENSG00000197786|ENST00000357377|OR5B17	ENSG00000197786|ENST00000357377|OR5B17	ENSG00000197786|ENST00000357377|OR5B17	MSMS	HCT116MG_D190212_S4	4	414.7611999511719	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.91	1	53.58	53.08	54.08	-0.32923								0	0	0	0.8837	1	20142	20142		5.2307	0	1				33972	6177	21513	21630	32706	32706					0.09099874391165486
TPLGPKWP	8	Unmodified	_TPLGPKWP_					0	0	0		nc|ENSG00000009724|O00187-2|MASP2;MASP2|p.F518Lfs*16|1|0.11|ENSG00000009724|chr1:11027392-11027392|A/-|frameshift_variant;ENSG00000009724|ENST00000400897|MASP2	nc|ENSG00000009724|O00187-2|MASP2	nc|ENSG00000009724|O00187-2|MASP2	MSMS	HCT116MG_D190212_S4	4	448.2548522949219	2	448.255446	894.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.479	1	29.13	28.63	29.63	-0.34921								0	0	0	0.8837	1	10647	10647		2.5775	0	1				33973	870	21514	21631	32707	32707					0.04487007593979797
TPLMRITTRL	10	Unmodified	_TPLMRITTRL_					0	0	0		FGFR2|p.V445M|1|0.34|ENSG00000066468|chr10:121503896-121503896|C/T|missense_variant	FGFR2|p.V445M|1|0.34|ENSG00000066468|chr10:121503896-121503896|C/T|missense_variant	FGFR2|p.V445M|1|0.34|ENSG00000066468|chr10:121503896-121503896|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	601.786865234375	2	601.357908	1200.70126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.764	1	34.606	34.106	35.106	-0.15834								0	0	0	0.90023	1	12945	12945		15.847	3.6065	1				33974	9157	21515	21632	32708	32708					0.10893998342044142
TPLYLPIRRRR	11	Unmodified	_TPLYLPIRRRR_					0	0	0			REV__ENST00000595304.1_1_19:44118348-44123759:-|nuORF	REV__ENST00000595304.1_1_19:44118348-44123759:-|nuORF	MSMS	HCT116MG_D190212_S1	1	721.2874145507812	2	720.949144	1439.88374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.002	1	25.002	24.502	25.502	0								0	0	0	0.95731	1	8975	8975		2.4985	0	1		+		33975	16718	21516	21633	32709	32709					0.18138893799005018
TPMVVHITPL	10	Unmodified	_TPMVVHITPL_					0	0	0			REV__B3GAT1|p.T90M|1|0.13|ENSG00000109956|chr11:134384032-134384032|G/A|missense_variant	REV__B3GAT1|p.T90M|1|0.13|ENSG00000109956|chr11:134384032-134384032|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	554.053955078125	2	554.315177	1106.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.273	1	53.977	53.477	54.477	-0.29587								0	0	0	0.91355	1	20561	20561		20.454	7.9221	1		+		33976	10024	21517	21634	32710	32710					0.06675833156396038
TPPDIDLHNQA	11	Unmodified	_TPPDIDLHNQA_					0	0	0		ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	MULTI-SECPEP	HCT116MG_D190212_S3	3	610.1842651367188	2	610.798934	1219.58332	0.1893	0.00011562	-0.18972	-0.00011588	-0.00042333	-2.5857E-07	610.7988566967639	17.666	1.9257	17.748	16.909	18.835	0.081358					87	36	4	0	0	0	0.34807	1	5813	5813		4.897	0.36815	1	16425000			33977	2816	21518	21635	32711	32711					-0.017692827128939825
TPPLTTTS	8	Unmodified	_TPPLTTTS_					0	0	0			REV__nc|ENSG00000198788|Q02817|MUC2	REV__nc|ENSG00000198788|Q02817|MUC2	MSMS	HCT116MG_D190212_S1	1	409.2192687988281	2	409.218726	816.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.347	1	19.347	18.847	19.847	0								0	0	0	0.8837	1	6704	6704		5.2307	0	1		+		33978	17263	21519	21636	32712	32712					0.007344143608520426
TPPPCSRSPQP	11	Unmodified	_TPPPCSRSPQP_					0	0	0		nc|ENSG00000129990|O00445-2|SYT5	nc|ENSG00000129990|O00445-2|SYT5	nc|ENSG00000129990|O00445-2|SYT5	MULTI-MSMS	HCT116MG_D190212_S3	3	583.7855224609375	2	583.784773	1165.55499	0.404	0.00023585	0.49592	0.00028951	0.89992	0.00052536	583.7846453150319	23.724	0.93798	23.663	23.165	24.103	-0.061449					24	17	2	0	0	0	0.6977	1	8367	8367		22.658	5.5452	1	2557400			33979	9460	21520	21637	32713	32713					-0.02116303893831173
TPPPRRQND	9	Unmodified	_TPPPRRQND_					0	0	0		USP8|p.E326D|1|0.25|ENSG00000138592|chr15:50476977-50476977|A/C|missense_variant	USP8|p.E326D|1|0.25|ENSG00000138592|chr15:50476977-50476977|A/C|missense_variant	USP8|p.E326D|1|0.25|ENSG00000138592|chr15:50476977-50476977|A/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	540.3305053710938	2	540.780879	1079.5472	0.43273	0.00023401	1.0708	0.00057908	1.5036	0.0008131	540.7816338156787	47.638	0.34821	47.638	47.441	47.789	0					10	6	2	0	0	0	0.26783	1	18120	18120		3.9444	0	1	17396000			33980	18687	21521	21638	32714	32714					0.010613049009180031
TPPVEGLGAP	10	Unmodified	_TPPVEGLGAP_					0	0	0		ENSG00000105613|ENST00000251472|MAST1	ENSG00000105613|ENST00000251472|MAST1	ENSG00000105613|ENST00000251472|MAST1	MULTI-MSMS	HCT116MG_D190212_S3	3	469.25274658203125	2	469.2531	936.491647	-0.022036	-1.0341E-05	0.28369	0.00013312	0.26166	0.00012278	469.25317815967406	36.42	0.36411	36.119	35.937	36.301	-0.30113					10	6	2	0	0	0	0.4604	1	13451	13451		37.974	1.847	1	4836200			33981	2015	21522	21639	32715	32715					0.0208607866057946
TPPWCRWHRSW	11	Unmodified	_TPPWCRWHRSW_					0	0	0		ENST00000610122.1_1_7:5467913-5468279:-|nuORF	ENST00000610122.1_1_7:5467913-5468279:-|nuORF	ENST00000610122.1_1_7:5467913-5468279:-|nuORF	MSMS	HCT116MG_D190212_S3	3	756.0223388671875	2	756.359305	1510.70406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.604	1	23.564	23.064	24.064	-0.03968								0	0	0	0.95636	1	8342	8342		2.9952	0	1				33982	9136	21523	21640	32716	32716					-0.030867334804270286
TPRRLKRRRRQ	11	Unmodified	_TPRRLKRRRRQ_					0	0	0		ENST00000321448.12_1_11:74648098-74660104:-|nuORF;ENST00000530562.5_1_11:74648079-74660104:-|nuORF	ENST00000321448.12_1_11:74648098-74660104:-|nuORF	ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	508.32440185546875	3	508.325702	1521.95528	0.36342	0.00018474	-0.21107	-0.00010729	0.15235	7.7444E-05	508.3255862735835	56.656	0.56899	56.656	56.428	56.997	0					33	10	4	0	0	0	0.74191	1	21901	21901		0.08335	0.08335	1	214550000			33983	7103	21524	21641	32717	32717					0.21517826276226515
TPRRLKRRRRQ	11	Unmodified	_TPRRLKRRRRQ_					0	0	0		ENST00000321448.12_1_11:74648098-74660104:-|nuORF;ENST00000530562.5_1_11:74648079-74660104:-|nuORF	ENST00000321448.12_1_11:74648098-74660104:-|nuORF	ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	508.32611083984375	3	508.325702	1521.95528	0.35276	0.00017931	-0.18544	-9.4263E-05	0.16732	8.5052E-05	508.6602068422349	56.922	0.31244	56.622	56.467	56.779	-0.3004					8	5	2	0	0	0	0.74191	1	21397	21397		0	0	1	2061800			33984	7103	21524	21641	32718	32718					0.21517826276226515
TPRRLKRRRRQ	11	Unmodified	_TPRRLKRRRRQ_					0	0	0		ENST00000321448.12_1_11:74648098-74660104:-|nuORF;ENST00000530562.5_1_11:74648079-74660104:-|nuORF	ENST00000321448.12_1_11:74648098-74660104:-|nuORF	ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		3	508.325702	1521.95528	0.39358	0.00020007	0.020731	1.0538E-05	0.41431	0.0002106	508.32552186772165	56.939	0.20843	56.66	56.521	56.729	-0.27913	0.014192	0.00031767	NaN	0.08335	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	891260			33985	7103	21524	21641							0.21517826276226515
TPSADFMYPLQ	11	Unmodified	_TPSADFMYPLQ_					0	0	0		ENSG00000119913|ENST00000646139|TECTB	ENSG00000119913|ENST00000646139|TECTB	ENSG00000119913|ENST00000646139|TECTB	MSMS	HCT116MG_D190212_S4	4	635.294189453125	2	635.294639	1268.57472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.198	1	20.989	20.489	21.489	-0.20959								0	0	0	0.92983	1	7304	7304		16.149	3.9744	1				33986	2671	21525	21642	32719	32719					-0.04881972673729251
TPSALTSRSW	10	Unmodified	_TPSALTSRSW_					0	0	0		ENST00000335325.8_1_16:75140446-75141757:+|nuORF	ENST00000335325.8_1_16:75140446-75141757:+|nuORF	ENST00000335325.8_1_16:75140446-75141757:+|nuORF	MSMS	HCT116MG_D190212_S1	1	553.2860717773438	2	553.285463	1104.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.242	1	27.242	26.742	27.742	0								0	0	0	0.90892	1	9877	9877		13.906	3.8321	1				33987	7186	21526	21643	32720	32720					0.008276534665810686
TPSGSVHVANY	11	Unmodified	_TPSGSVHVANY_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MSMS	HCT116MG_D190212_S2	2	566.747314453125	2	566.275095	1130.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.18	1	21.795	21.295	22.295	-0.38513								0	0	0	0.90489	1	7844	7844		19.362	0.98885	1		+		33988	14117	21527	21644	32721	32721					-0.024409369130808045
TPSGSVHVANY	11	Unmodified	_TPSGSVHVANY_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	HCT116MG_D190212_S3	3	566.2758178710938	2	566.275095	1130.53564	0.40775	0.0002309	0.91713	0.00051935	1.3249	0.00075025	566.2755764501159	22.158	0.67737	22.158	21.834	22.511	0.00074577					29	12	3	0	0	0	0.7093	1	7715	7715		18.373	0.22675	1	6479700	+		33989	14117	21527	21644	32722	32722					-0.024409369130808045
TPSPAGGPD	9	Unmodified	_TPSPAGGPD_					0	0	0		ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	HCT116MG_D190212_S3	3	798.36279296875	1	798.362824	797.355547	0.68622	0.00054785	-0.39596	-0.00031612	0.29025	0.00023173	798.362851464939	22.766	0.56029	22.747	22.439	22.999	-0.018869					18	10	2	0	0	0	0.14972	1	7939	7939		48.346	2.3249	1	3874400			33990	1381	21528	21645	32723	32723					-0.051236158500842066
TPSPSHGGSPP	11	Unmodified	_TPSPSHGGSPP_					0	0	0		sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1;sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1	sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1	sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1	MSMS	HCT116MG_D190212_S4	4	510.7393798828125	2	510.740888	1019.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.775	1	23.523	23.023	24.023	-0.2521								0	0	0	0.92235	1	8342	8342		17.113	1.2657	1				33991	18209	21529	21646	32724	32724					-0.041731814929448774
TPSQAQPH	8	Unmodified	_TPSQAQPH_					0	0	0		ASXL2|p.P778Qfs*21|1|0.48|ENSG00000143970|chr2:25744004-25744004|G/-|frameshift_variant;nc|ENSG00000143970|Q76L83-2|ASXL2;ENSG00000143970|ENST00000435504|ASXL2	ASXL2|p.P778Qfs*21|1|0.48|ENSG00000143970|chr2:25744004-25744004|G/-|frameshift_variant	ASXL2|p.P778Qfs*21|1|0.48|ENSG00000143970|chr2:25744004-25744004|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	865.4175415039062	1	865.416256	864.40898	0.75441	0.00065288	0.51924	0.00044936	1.2736	0.0011022	865.4163756447768	19.524	0.36455	19.584	19.438	19.802	0.05983					11	6	2	0	0	0	0.53596	1	6703	6703		37.974	0	1	5467800			33992	206	21530	21647	32725	32725					-0.028648183475752376
TPSQDLVKEP	10	Unmodified	_TPSQDLVKEP_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MSMS	HCT116MG_D190212_S4	4	557.2927856445312	2	557.292953	1112.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.854	1	28.513	28.013	29.013	-0.34059								0	0	0	0.83705	1	10394	10394		24.021	9.1823	1		+		33993	13766	21531	21648	32726	32726					0.019571005438820066
TPSRGLTL	8	Unmodified	_TPSRGLTL_					0	0	0			REV__ZNF2|p.F183Lfs*38|1|0.21|ENSG00000275111|chr2:95181372-95181372|T/-|frameshift_variant	REV__ZNF2|p.F183Lfs*38|1|0.21|ENSG00000275111|chr2:95181372-95181372|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	422.74786376953125	2	422.747985	843.481417	-0.21827	-9.2272E-05	-0.20292	-8.5782E-05	-0.42118	-0.00017805	422.7479408994819	39.958	0.20769	39.958	39.865	40.073	0					5	3	2	0	0	0	0.48901	1	15026	15026		42.095	0	1	10080000	+		33994	18072	21532	21649	32727	32727					0.053415157259905754
TPSRGYFWRWR	11	Unmodified	_TPSRGYFWRWR_					0	0	0		ENST00000447654.5_1_6:34204663-34204744:+|nuORF	ENST00000447654.5_1_6:34204663-34204744:+|nuORF	ENST00000447654.5_1_6:34204663-34204744:+|nuORF	MSMS	HCT116MG_D190212_S3	3	756.3886108398438	2	756.386377	1510.7582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.183	1	27.014	26.514	27.514	-0.16933								0	0	0	0.94538	1	9785	9785		8.7454	3.0136	1				33995	7967	21533	21650	32728	32728					0.023251819427741793
TPSSPDRAQFF	11	Unmodified	_TPSSPDRAQFF_					0	0	0		ENST00000492278.5_1_9:140356016-140356520:-|nuORF	ENST00000492278.5_1_9:140356016-140356520:-|nuORF	ENST00000492278.5_1_9:140356016-140356520:-|nuORF	MSMS	HCT116MG_D190212_S3	3	626.8001098632812	2	626.801477	1251.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.039	1	18.115	17.615	18.615	0.076334								0	0	0	0.93295	1	6101	6101		15.248	0	1				33996	8350	21534	21651	32729	32729					-0.0273297885030388
TPSSPDRAQFF	11	Unmodified	_TPSSPDRAQFF_					0	0	0		ENST00000492278.5_1_9:140356016-140356520:-|nuORF	ENST00000492278.5_1_9:140356016-140356520:-|nuORF	ENST00000492278.5_1_9:140356016-140356520:-|nuORF	MSMS	HCT116MG_D190212_S4	4	626.8003540039062	2	626.801477	1251.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.222	1	18.047	17.547	18.547	-0.17501								0	0	0	0.93295	1	6101	6101		15.248	3.0078	1				33997	8350	21534	21651	32730	32730					-0.0273297885030388
TPSTRITYGT	10	Unmodified	_TPSTRITYGT_					0	0	0		LEMD1|p.A121T|1|0.34|ENSG00000186007|chr1:205381843-205381843|C/T|missense_variant	LEMD1|p.A121T|1|0.34|ENSG00000186007|chr1:205381843-205381843|C/T|missense_variant	LEMD1|p.A121T|1|0.34|ENSG00000186007|chr1:205381843-205381843|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	548.7855834960938	2	548.785296	1095.55604	0.39878	0.00021885	-0.40094	-0.00022003	-0.0021605	-1.1857E-06	548.785039406403	19.801	0.36464	19.861	19.698	20.063	0.05983					13	6	3	0	0	0	0.28726	1	6815	6815		51.63	9.7902	1	14977000			33998	9293	21535	21652	32731	32731					0.012082337467063553
TPSTRITYGT	10	Unmodified	_TPSTRITYGT_					0	0	0		LEMD1|p.A121T|1|0.34|ENSG00000186007|chr1:205381843-205381843|C/T|missense_variant	LEMD1|p.A121T|1|0.34|ENSG00000186007|chr1:205381843-205381843|C/T|missense_variant	LEMD1|p.A121T|1|0.34|ENSG00000186007|chr1:205381843-205381843|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	548.785296	1095.55604	0.56448	0.00030978	-0.25986	-0.00014261	0.30462	0.00016717	548.7850241995	20.216	0.25973	20.014	19.885	20.144	-0.20133	0.076571	6.724E-05	NaN	51.63	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9951800			33999	9293	21535	21652							0.012082337467063553
TPTAVASPVP	10	Unmodified	_TPTAVASPVP_					0	0	0		ENST00000554086.1_1_14:61773915-61789493:-|nuORF	ENST00000554086.1_1_14:61773915-61789493:-|nuORF	ENST00000554086.1_1_14:61773915-61789493:-|nuORF	MSMS	HCT116MG_D190212_S4	4	470.2607421875	2	470.260925	938.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.148	1	30.778	30.278	31.278	-0.37026								0	0	0	0.87399	1	11293	11293		19.257	1.122	1				34000	8775	21536	21653	32732	32732					0.035583651776164515
TPTNQIVSVWY	11	Unmodified	_TPTNQIVSVWY_					0	0	0			REV__ENST00000264668.6_1_5:7873570-7875415:+|nuORF	REV__ENST00000264668.6_1_5:7873570-7875415:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	655.338623046875	2	654.335153	1306.65575	0.49564	0.00032432	-1.1587	-0.00075818	-0.66305	-0.00043386	654.3332785482305	23.601	0.94008	23.354	22.748	23.688	-0.24775					35	17	3	0	0	0	0.71532	2	8222	8222;8234		16.149	3.1066	1	4257700	+		34001	14668	21537	21654	32733;32734	32733					0.014690513606637978
TPVAERFFT	9	Unmodified	_TPVAERFFT_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	HCT116MG_D190212_S3	3	534.8314819335938	2	534.279649	1066.54475	0.65258	0.00034866	0.0036037	1.9254E-06	0.65619	0.00035059	534.2799153309159	53.312	0.20912	53.009	52.878	53.087	-0.30305					6	3	2	0	0	0	0.32162	1	20190	20190		28.487	15.955	1	1587200			34002	2167	21538	21655	32735	32735					0.014134564432424668
TPWPFALPP	9	Unmodified	_TPWPFALPP_					0	0	0			REV__ENST00000419155.5_1_9:123619076-123619268:-|nuORF	REV__ENST00000419155.5_1_9:123619076-123619268:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	512.7747802734375	2	513.276378	1024.5382	0.4187	0.00021491	0.10023	5.1446E-05	0.51893	0.00026635	513.2763151901596	15.373	0.20846	15.373	15.275	15.484	0					6	3	2	0	0	0	0.2622	1	5146	5146		0.52476	0	1	859530	+		34003	15504	21539	21656	32736	32736					0.026915632825193825
TPYNSRTVMN	10	Unmodified	_TPYNSRTVMN_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MSMS	HCT116MG_D190212_S3	3	591.7824096679688	2	591.78223	1181.54991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.895	1	21.896	21.396	22.396	0.00074577								0	0	0	0.91971	1	7653	7653		11.495	0	1				34004	3137	21540	21657	32737	32737					-0.03360607756440004
TQAGVQRCDH	10	Unmodified	_TQAGVQRCDH_					0	0	0		nc|ENSG00000100478|Q9Y587-4|AP4S1	nc|ENSG00000100478|Q9Y587-4|AP4S1	nc|ENSG00000100478|Q9Y587-4|AP4S1	MSMS	HCT116MG_D190212_S1	1	557.7543334960938	2	557.756546	1113.49854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.527	1	18.527	18.027	19.027	0								0	0	0	0.84701	1	6374	6374		22.736	4.5899	1				34005	9404	21541	21658	32738	32738					-0.0536693173050935
TQAPAQGPPRQ	11	Unmodified	_TQAPAQGPPRQ_					0	0	0			REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	MULTI-MSMS	HCT116MG_D190212_S3	3	575.8016967773438	2	575.801811	1149.58907	0.40117	0.000231	0.13946	8.0302E-05	0.54063	0.0003113	575.8017869924633	24.451	0.36413	24.367	24.133	24.497	-0.083694					13	6	3	0	0	0	0.69464	1	8678	8678		23.79	4.5328	1	8803100	+		34006	17270	21542	21659	32739	32739					0.020258605894241555
TQAPAQGPPRQ	11	Unmodified	_TQAPAQGPPRQ_					0	0	0			REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	575.801811	1149.58907	0.40117	0.000231	0.13946	8.0302E-05	0.54063	0.0003113	575.8017869924633	24.451	0.36413	24.367	24.133	24.497	-0.083694	0.039557	-6.0465E-06	NaN	23.79	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8803100	+		34007	17270	21542	21659							0.020258605894241555
TQAPAQGPPRQ	11	Unmodified	_TQAPAQGPPRQ_					0	0	0			REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	REV__nc|ENSG00000205022|A6NDY0-3|PABPN1L	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	575.801811	1149.58907	0.59333	0.00034164	0.14969	8.619E-05	0.74302	0.00042783	575.8017078726762	24.557	0.46668	24.288	24.082	24.549	-0.26881	-0.039557	5.7301E-06	NaN	23.79	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4238100	+		34008	17270	21542	21659							0.020258605894241555
TQARRRRRKFP	11	Unmodified	_TQARRRRRKFP_					0	0	0		ENST00000475854.1_1_X:100914419-100914797:-|nuORF;ENST00000328766.9_1_X:100913503-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	491.2991943359375	3	491.299153	1470.87563	0.32228	0.00015834	0.33581	0.00016498	0.6581	0.00032332	491.29925064523655	56.502	0.6716	56.502	56.222	56.893	0					25	12	4	0	0	0	0.74191	1	21678	21678		0.08335	0	1	48406000			34009	7151	21543	21660	32740	32740					0.15902759602249716
TQDCEECK	8	Unmodified	_TQDCEECK_					0	0	0			REV__ENSG00000182111|ENST00000420713|ZNF716	REV__ENSG00000182111|ENST00000420713|ZNF716	MSMS	HCT116MG_D190212_S1	1	478.177490234375	2	478.178417	954.342282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.1259	1	4.1259	3.6259	4.6259	0								0	0	0	0.8837	1	1234	1234		0.69038	0	1		+		34010	13704	21544	21661	32741	32741					-0.13671558015994378
TQDCEECK	8	Unmodified	_TQDCEECK_					0	0	0			REV__ENSG00000182111|ENST00000420713|ZNF716	REV__ENSG00000182111|ENST00000420713|ZNF716	MSMS	HCT116MG_D190212_S1	1	478.17791748046875	2	478.178417	954.342282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9963	1	5.9963	5.4963	6.4963	0								0	0	0	0.8837	1	1807	1807		0.69038	0	1		+		34011	13704	21544	21661	32742	32742					-0.13671558015994378
TQDCEECK	8	Unmodified	_TQDCEECK_					0	0	0			REV__ENSG00000182111|ENST00000420713|ZNF716	REV__ENSG00000182111|ENST00000420713|ZNF716	MSMS	HCT116MG_D190212_S1	1	478.1781311035156	2	478.178417	954.342282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6272	1	7.6272	7.1272	8.1272	0								0	0	0	0.8837	1	2303	2303		0.69038	0	1		+		34012	13704	21544	21661	32743	32743					-0.13671558015994378
TQDCEECK	8	Unmodified	_TQDCEECK_					0	0	0			REV__ENSG00000182111|ENST00000420713|ZNF716	REV__ENSG00000182111|ENST00000420713|ZNF716	MSMS	HCT116MG_D190212_S3	3	478.1782531738281	2	478.178417	954.342282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3982	1	3.4346	2.9346	3.9346	0.036387								0	0	0	0.8837	1	1031	1031		0.69038	0	1		+		34013	13704	21544	21661	32744	32744					-0.13671558015994378
TQDCEECK	8	Unmodified	_TQDCEECK_					0	0	0			REV__ENSG00000182111|ENST00000420713|ZNF716	REV__ENSG00000182111|ENST00000420713|ZNF716	MSMS	HCT116MG_D190212_S4	4	478.17816162109375	2	478.178417	954.342282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.942	1	63.703	63.203	64.203	-0.2389								0	0	0	0.8837	1	24092	24092		0.69038	0	1		+		34014	13704	21544	21661	32745	32745					-0.13671558015994378
TQELFPQW	8	Unmodified	_TQELFPQW_					0	0	0		ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1	ENST00000475789.1_1_7:89789075-89791404:+|nuORF	ENST00000475789.1_1_7:89789075-89791404:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	524.3080444335938	2	524.758549	1047.50255	0.30597	0.00016056	-0.68654	-0.00036027	-0.38057	-0.00019971	524.7583113319195	53.799	0.20689	53.61	53.48	53.687	-0.1894					8	3	3	0	0	0	0.29044	1	20719	20719		19.257	5.3509	1	16296000			34015	4711	21545	21662	32746	32746					-0.019305189651277033
TQETKVIV	8	Unmodified	_TQETKVIV_					0	0	0			REV__EHF|p.K201Sfs*18|1|0.2|ENSG00000135373|chr11:34656961-34656961|A/-|frameshift_variant	REV__EHF|p.K201Sfs*18|1|0.2|ENSG00000135373|chr11:34656961-34656961|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	459.7690734863281	2	459.26875	916.522947	0.16607	7.6272E-05	-1.8403	-0.0008452	-1.6742	-0.00076893	459.26806598352726	45.157	0.66554	44.785	44.53	45.195	-0.37266					21	14	2	0	0	0	0.8672	1	16611	16611		2.3027	0	1	2356300	+		34016	10444	21546	21663	32747	32747					0.06134651694662807
TQFFRRFK	8	Unmodified	_TQFFRRFK_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MSMS	HCT116MG_D190212_S4	4	377.21417236328125	3	377.213692	1128.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.524	1	42.148	41.648	42.648	-0.37565								0	0	0	0.8837	1	15632	15632		2.9952	0.49676	1		+		34017	12304	21547	21664	32748	32748					0.060082640452719716
TQFFWWYYKQP	11	Unmodified	_TQFFWWYYKQP_					0	0	0			REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	MSMS	HCT116MG_D190212_S1	1	797.3245849609375	2	797.379894	1592.74524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.108	1	17.108	16.608	17.608	0								0	0	0	0.95954	1	5802	5802		1.3295	0.25807	1		+		34018	12196	21548	21665	32749	32749					-0.0274269395997635
TQFFWWYYKQP	11	Unmodified	_TQFFWWYYKQP_					0	0	0			REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	MSMS	HCT116MG_D190212_S3	3	797.3792724609375	2	797.379894	1592.74524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.666	1	20.701	20.201	21.201	0.034473								0	0	0	0.95581	1	7160	7160		3.2813	0.78282	1		+		34019	12196	21548	21665	32750	32750					-0.0274269395997635
TQFFWWYYKQP	11	Unmodified	_TQFFWWYYKQP_					0	0	0			REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	MSMS	HCT116MG_D190212_S4	4	797.3804321289062	2	797.379894	1592.74524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.066	1	26.755	26.255	27.255	-0.3114								0	0	0	0.95954	1	9672	9672		1.3295	0.9789	1		+		34020	12196	21548	21665	32751	32751					-0.0274269395997635
TQFRHIGR	8	Unmodified	_TQFRHIGR_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-SECPEP	HCT116MG_D190212_S4	4	507.239501953125	2	507.783225	1013.5519	0.079116	4.0174E-05	-0.95861	-0.00048677	-0.8795	-0.00044659	508.28435019052836	32.358	0.25938	31.978	31.845	32.105	-0.37924					5	3	2	0	0	0	0.30703	1	11749	11749		18.135	11.412	1	2216100			34021	4845	21549	21666	32752	32752					0.045662338343163356
TQFRHIGR	8	Unmodified	_TQFRHIGR_					0	0	0		nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000166377|O43861-2|ATP9B	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	507.783225	1013.5519	0.13886	7.0513E-05	-1.5856	-0.00080512	-1.4467	-0.00073461	507.78226490592954	32.232	0.4166	31.954	31.786	32.202	-0.27841	-0.01221	-0.00026458	NaN	12.532	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4764300			34022	4845	21549	21666							0.045662338343163356
TQGIRHRY	8	Unmodified	_TQGIRHRY_					0	0	0		ENST00000482170.6_1_X:155252010-155252984:+|nuORF	ENST00000482170.6_1_X:155252010-155252984:+|nuORF	ENST00000482170.6_1_X:155252010-155252984:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	516.3016357421875	2	515.780682	1029.54681	-0.0041924	-2.1624E-06	-1.0456	-0.00053932	-1.0498	-0.00054148	515.7800881970758	36.472	0.20819	36.171	36.041	36.249	-0.30113					5	3	2	0	0	0	0.32538	1	13462	13462		2.3027	1.778	1	3083500			34023	8259	21550	21667	32753	32753					0.03321929971684767
TQGPWPPAQ	9	Unmodified	_TQGPWPPAQ_					0	0	0			REV__nc|ENSG00000162734|Q15121-2|PEA15	REV__nc|ENSG00000162734|Q15121-2|PEA15	MSMS	HCT116MG_D190212_S3	3	491.2411193847656	2	491.243067	980.47158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.446	1	18.523	18.023	19.023	0.076334								0	0	0	0.67173	1	6265	6265		20.454	4.6064	1		+		34024	17186	21551	21668	32754	32754					-0.019436722793898298
TQHQIVEE	8	Unmodified	_TQHQIVEE_					0	0	0			REV__ENSG00000196597|ENST00000481138|ZNF782	REV__ENSG00000196597|ENST00000481138|ZNF782	MULTI-SECPEP	HCT116MG_D190212_S3	3	492.2250061035156	2	492.243264	982.471974	0.15094	7.4297E-05	-0.7332	-0.00036091	-0.58227	-0.00028662	492.24325796591535	18.815	0.57229	18.884	18.615	19.187	0.069157					12	10	2	0	0	0	0.26426	1	6317	6317		26.884	1.4843	1	2324200	+		34025	14037	21552	21669	32755	32755					-0.01996297350194709
TQIFVKRFHR	10	Unmodified	_TQIFVKRFHR_					0	0	0			REV__ENST00000563230.1_1_16:79123974-79135149:+|nuORF	REV__ENST00000563230.1_1_16:79123974-79135149:+|nuORF	MSMS	HCT116MG_D190212_S1	1	666.39111328125	2	666.388388	1330.76222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.131	1	45.131	44.631	45.631	0								0	0	0	0.95648	1	17091	17091		3.2813	0.28607	1		+		34026	16507	21553	21670	32756	32756					0.11007271436506016
TQKAPNNYR	9	Unmodified	_TQKAPNNYR_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MSMS	HCT116MG_D190212_S3	3	546.2852172851562	2	546.283254	1090.55196	0.38548	0.00021058	0.39993	0.00021848	0.78541	0.00042906	546.2834695582187	15.989	0.52036	16.075	15.717	16.237	0.085423					21	9	4	0	0	0	0.43552	1	5249	5249		27.629	7.0479	1	9052400			34027	4088	21554	21671	32757	32757					0.010301890436267058
TQKAPNNYR	9	Unmodified	_TQKAPNNYR_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	546.283254	1090.55196	0.38548	0.00021058	0.39993	0.00021848	0.78541	0.00042906	546.2834695582187	15.989	0.52036	16.075	15.717	16.237	0.085423	0.012924	-0.00026416	NaN	27.629	21	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9052400			34028	4088	21554	21671							0.010301890436267058
TQKAPNNYR	9	Unmodified	_TQKAPNNYR_					0	0	0		ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	ENSG00000150637|ENST00000582621|CD226	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	546.283254	1090.55196	-0.11499	-6.2815E-05	0.80269	0.0004385	0.6877	0.00037568	546.2837670715055	16.213	0.64842	16.049	15.615	16.264	-0.16364	-0.012924	0.00017588	NaN	27.629	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4111900			34029	4088	21554	21671							0.010301890436267058
TQKGPARA	8	Unmodified	_TQKGPARA_					0	0	0			REV__ENST00000599063.5_1_19:48601366-48609786:-|nuORF	REV__ENST00000599063.5_1_19:48601366-48609786:-|nuORF	MSMS	HCT116MG_D190212_S4	4	414.7384033203125	2	414.737951	827.46135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.525	1	55.213	54.713	55.713	-0.312								0	0	0	0.8837	1	20793	20793		2.5775	0.27475	1		+		34030	16738	21555	21672	32758	32758					0.040717647860219586
TQLAPGAPGLP	11	Unmodified	_TQLAPGAPGLP_					0	0	0			REV__ENSG00000182871|ENST00000651438|COL18A1;REV__nc|ENSG00000182871|P39060-1|COL18A1	REV__nc|ENSG00000182871|P39060-1|COL18A1	MSMS	HCT116MG_D190212_S3	3	511.2749328613281	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.602	1	32.318	31.818	32.818	-0.28394								0	0	0	0.80071	1	11955	11955		32.786	11.249	1		+		34031	17239;13732	21556	21673	32759	32759					0.05093742960275449
TQLRPREKQI	10	Unmodified	_TQLRPREKQI_					0	0	0			REV__ENSG00000145975|ENST00000274673|FAM217A	REV__ENSG00000145975|ENST00000274673|FAM217A	MSMS	HCT116MG_D190212_S1	1	634.8764038085938	2	634.875311	1267.73607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.721	1	61.721	61.221	62.221	0								0	0	0	0.96582	1	23820	23820		1.1933	0.66858	1		+		34032	12468	21557	21674	32760	32760					0.11290957474375318
TQLSLGRHPI	10	Unmodified	_TQLSLGRHPI_					0	0	0		ENSG00000154007|ENST00000284142|ASB17	ENSG00000154007|ENST00000284142|ASB17	ENSG00000154007|ENST00000284142|ASB17	MSMS	HCT116MG_D190212_S2	2	561.3236083984375	2	561.324922	1120.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.983	1	30.716	30.216	31.216	-0.26704								0	0	0	0.86501	1	11412	11412		20.415	3.3016	1				34033	4202	21558	21675	32761	32761					0.07979925491508766
TQLYILIVY	9	Unmodified	_TQLYILIVY_					0	0	0			REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	REV__nc|ENSG00000024526|Q5TB30-2|DEPDC1	MSMS	HCT116MG_D190212_S2	2	563.3318481445312	2	563.33135	1124.64815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.42	1	30.135	29.635	30.635	-0.28453								0	0	0	0.76902	1	11183	11183		4.3292	0	1		+		34034	10560	21559	21676	32762	32762					0.09080943831054356
TQMPCEHLP	9	Unmodified	_TQMPCEHLP_					0	0	0		ENST00000525527.5_1_11:111268336-111269853:-|nuORF	ENST00000525527.5_1_11:111268336-111269853:-|nuORF	ENST00000525527.5_1_11:111268336-111269853:-|nuORF	MSMS	HCT116MG_D190212_S4	4	528.2354125976562	2	528.23607	1054.45759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.232	1	34.846	34.346	35.346	-0.38606								0	0	0	0.76669	1	12896	12896		12.532	0	1				34035	8580	21560	21677	32763	32763					-0.06746409094353112
TQMSRQSLDY	10	Unmodified	_TQMSRQSLDY_					0	0	0			REV__KCNJ3|p.P329Lfs*2|2|0.25|ENSG00000162989|chr2:154854785-154854785|T/-|frameshift_variant	REV__KCNJ3|p.P329Lfs*2|2|0.25|ENSG00000162989|chr2:154854785-154854785|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	410.19195556640625	3	410.192405	1227.55539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.254	1	29.032	28.532	29.532	-0.22195								0	0	0	0.92272	1	10620	10620		6.1918	0	1		+		34036	12905	21561	21678	32764	32764					-0.04928928964636725
TQNKEALV	8	Unmodified	_TQNKEALV_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	HCT116MG_D190212_S3	3	451.2223815917969	2	451.750724	901.486896	0.1069	4.829E-05	0.48968	0.00022121	0.59658	0.0002695	451.7510159006615	23.253	0.31272	23.213	23.083	23.396	-0.03968					10	5	3	0	0	0	0.21625	1	8227	8227		29.082	3.6823	1	6919000			34037	3171	21562	21679	32765	32765					0.03221194517789172
TQPELQVP	8	Unmodified	_TQPELQVP_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MSMS	HCT116MG_D190212_S3	3	456.24468994140625	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.466	1	26.317	25.817	26.817	-0.14924								0	0	0	0.77419	1	9496	9496		24.674	1.5255	1				34038	5935	21563	21680	32766	32766					0.017177921435290955
TQPIQMGSSW	10	Unmodified	_TQPIQMGSSW_					0	0	0			REV__ENST00000449359.7_1_16:68391035-68391134:+|nuORF	REV__ENST00000449359.7_1_16:68391035-68391134:+|nuORF	MSMS	HCT116MG_D190212_S1	1	567.4149780273438	2	567.766049	1133.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.667	1	26.667	26.167	27.167	0								0	0	0	0.90475	1	9645	9645		14.838	3.198	1		+		34039	15699	21564	21681	32767	32767					-0.04387395159437801
TQPSVKIRQVP	11	Unmodified	_TQPSVKIRQVP_					0	0	0		ENST00000447563.5_1_7:158809599-158810334:+|nuORF	ENST00000447563.5_1_7:158809599-158810334:+|nuORF	ENST00000447563.5_1_7:158809599-158810334:+|nuORF	MSMS	HCT116MG_D190212_S2	2	626.8009033203125	2	626.872237	1251.72992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.78	1	30.513	30.013	31.013	-0.26704								0	0	0	0.9465	1	11330	11330		8.1555	0.54658	1				34040	7965	21565	21682	32768	32768					0.11412439242826622
TQRGCWTCTW	10	Unmodified	_TQRGCWTCTW_					0	0	0			REV__ENST00000535658.1_1_16:57024806-57024920:+|nuORF	REV__ENST00000535658.1_1_16:57024806-57024920:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	621.2635498046875	2	621.26315	1240.51175	0.54153	0.00033643	0.4406	0.00027373	0.98213	0.00061016	621.2635397971422	40.201	1.1391	40.128	39.894	41.033	-0.072838					76	21	6	0	0	0	0.78781	1	15366	15366		13.042	0.80181	1	2402500000	+		34041	16338	21566	21683	32769	32769					-0.09888816942770973
TQRRGYLLL	9	Unmodified	_TQRRGYLLL_					0	0	0		ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	MSMS	HCT116MG_D190212_S4	4	560.3349609375	2	560.33529	1118.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.572	1	60.306	59.806	60.806	-0.26582								0	0	0	0.76973	1	22827	22827		1.8442	0	1				34042	4769	21567	21684	32770	32770					0.10144515871184012
TQRRRRRRHRH	11	Unmodified	_TQRRRRRRHRH_					0	0	0		RBM10|p.G172Afs*94|1|0.86|ENSG00000182872|chrX:47175028-47175028|G/-|frameshift_variant;RBM10|p.R332Afs*49|1|0.42|ENSG00000182872|chrX:47179970-47179971|-/G|frameshift_variant;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10	RBM10|p.G172Afs*94|1|0.86|ENSG00000182872|chrX:47175028-47175028|G/-|frameshift_variant	RBM10|p.G172Afs*94|1|0.86|ENSG00000182872|chrX:47175028-47175028|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	539.3238525390625	3	538.988084	1613.94242	0.40983	0.0002209	0.50126	0.00027017	0.9111	0.00049107	539.3226665054796	49.115	0.46623	49.115	48.871	49.337	0					9	8	2	0	0	0	0.74191	1	18732	18732		0	0	1	13865000			34043	5689	21568	21685	32771	32771					0.1600080793671168
TQSCCSCW	8	Unmodified	_TQSCCSCW_					0	0	0		ENST00000372826.6_1_20:43566725-43587002:+|nuORF;ENST00000372819.5_1_20:43566725-43581329:+|nuORF	ENST00000372826.6_1_20:43566725-43587002:+|nuORF	ENST00000372826.6_1_20:43566725-43587002:+|nuORF	MSMS	HCT116MG_D190212_S1	1	459.1498107910156	2	459.151148	916.287744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.118	1	49.118	48.618	49.618	0								0	0	0	0.8837	1	18707	18707		0.69038	0	1				34044	7466	21569	21686	32772	32772					-0.17374848368422136
TQSLRRPRL	9	Unmodified	_TQSLRRPRL_					0	0	0			REV__ENST00000500093.2_1_5:55291038-55291134:+|nuORF	REV__ENST00000500093.2_1_5:55291038-55291134:+|nuORF	MSMS	HCT116MG_D190212_S4	4	376.2113952636719	3	376.231634	1125.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.559	1	56.253	55.753	56.753	-0.30626								0	0	0	0.7696	1	21205	21205		1.1933	0	1		+		34045	16111	21570	21687	32773	32773					0.11526436476970048
TQVILFIVFFV	11	Unmodified	_TQVILFIVFFV_					0	0	0			REV__ENSG00000181016|ENST00000312849|LSMEM1	REV__ENSG00000181016|ENST00000312849|LSMEM1	MULTI-MSMS	HCT116MG_D190212_S1	1	442.26446533203125	3	442.600442	1324.7795	0.163	7.2144E-05	1.1553	0.00051136	1.3183	0.0005835	442.6009061322323	54.153	0.20536	54.153	54.026	54.231	0					5	3	2	0	0	0	0.74191	1	20749	20749		2.2527	1.0379	1	16550000	+		34046	13679	21571	21688	32774	32774					0.13009754198924384
TQVILFIVFFV	11	Unmodified	_TQVILFIVFFV_					0	0	0			REV__ENSG00000181016|ENST00000312849|LSMEM1	REV__ENSG00000181016|ENST00000312849|LSMEM1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	442.600442	1324.7795	0.163	7.2144E-05	1.1553	0.00051136	1.3183	0.0005835	442.6009061322323	54.153	0.20536	54.153	54.026	54.231	0	0	0	NaN	2.2527	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16550000	+		34047	13679	21571	21688							0.13009754198924384
TQVPSGNPQPT	11	Unmodified	_TQVPSGNPQPT_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	HCT116MG_D190212_S2	2	563.2803955078125	2	563.280377	1124.5462	0.43202	0.00024335	0.0080209	4.518E-06	0.44004	0.00024786	563.2803616922978	19.282	0.52108	18.913	18.627	19.148	-0.3695					21	9	4	0	0	0	0.4398	1	6679	6679		51.488	11.249	1	29217000			34048	9548	21572	21689	32775	32775					-0.011089542586660173
TQVPSGNPQPT	11	Unmodified	_TQVPSGNPQPT_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	HCT116MG_D190212_S3	3	563.7823486328125	2	563.280377	1124.5462	0.40054	0.00022562	-0.068544	-3.8609E-05	0.332	0.00018701	563.2802952172902	18.54	0.78131	18.617	18.153	18.934	0.076334					32	14	4	0	0	0	0.3975	1	6270	6270		55.249	18.174	1	38974000			34049	9548	21572	21689	32776	32776					-0.011089542586660173
TQVPSGNPQPT	11	Unmodified	_TQVPSGNPQPT_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	HCT116MG_D190212_S4	4	563.2804565429688	2	563.280377	1124.5462	0.11463	6.4568E-05	0.27707	0.00015607	0.3917	0.00022064	563.2805490902392	18.016	0.62142	17.841	17.636	18.257	-0.17501					20	11	3	0	0	0	0.51928	1	6014	6014		44.392	8.7797	1	10067000			34050	9548	21572	21689	32777	32777					-0.011089542586660173
TQVPSGNPQPT	11	Unmodified	_TQVPSGNPQPT_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-SECPEP	HCT116MG_D190212_S4	4	563.7545166015625	2	563.280377	1124.5462	0.21704	0.00012226	0.15905	8.959E-05	0.37609	0.00021185	563.2804292700814	18.822	0.83177	18.641	18.251	19.083	-0.18052					34	15	4	0	0	0	0.27945	1	6336	6336		41.347	4.2724	1	34824000			34051	9548	21572	21689	32778	32778					-0.011089542586660173
TQVPSGNPQPT	11	Unmodified	_TQVPSGNPQPT_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MATCH	HCT116MG_D190212_S1	1		2	563.280377	1124.5462	0.45511	0.00025635	0.24066	0.00013556	0.69576	0.00039191	563.2806319638315	18.036	0.20847	18.036	17.933	18.141	0	0.060435	4.7896E-06	NaN	44.392	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	996330			34052	9548	21572	21689							-0.011089542586660173
TQVPSGNPQPT	11	Unmodified	_TQVPSGNPQPT_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	563.280377	1124.5462	-0.010543	-5.9385E-06	-0.046941	-2.6441E-05	-0.057484	-3.238E-05	563.2803528471612	18.554	0.52079	18.191	18.008	18.529	-0.36325	0.21568	-0.00031921	NaN	44.392	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11733000			34053	9548	21572	21689							-0.011089542586660173
TQVPSGNPQPT	11	Unmodified	_TQVPSGNPQPT_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	563.280377	1124.5462	0.15107	8.5097E-05	0.26393	0.00014867	0.41501	0.00023376	563.2804702694226	17.752	0.52018	17.834	17.638	18.158	0.081356	-0.14179	3.101E-05	NaN	44.392	19	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14960000			34054	9548	21572	21689							-0.011089542586660173
TQWGPQGYFY	10	Unmodified	_TQWGPQGYFY_					0	0	0		ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	MULTI-MSMS	HCT116MG_D190212_S4	4	416.52276611328125	3	416.189101	1245.54547	0.2448	0.00010188	-0.69075	-0.00028748	-0.44595	-0.0001856	416.1889044604391	34.031	0.25969	33.647	33.517	33.777	-0.38426					7	4	2	0	0	0	0.87195	1	12423	12423		5.4027	0.99656	1	5193200			34055	3568	21573	21690	32779	32779					-0.06747748907719142
TQYSFDDYT	9	Unmodified	_TQYSFDDYT_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-MSMS	HCT116MG_D190212_S4	4	1139.4541015625	1	1139.45276	1138.44548	0.5273	0.00060084	-0.051373	-5.8537E-05	0.47593	0.0005423	1139.4527386742252	40.346	0.22731	39.968	39.903	40.13	-0.37828					7	4	2	0	0	0	0.2853	1	14826	14826		32.305	5.4218	1	2835900	+		34056	12047	21574	21691	32780	32780					-0.11820031032175393
TRAPAHAK	8	Unmodified	_TRAPAHAK_					0	0	0			REV__ENST00000258530.7_1_12:105583925-105589069:-|nuORF	REV__ENST00000258530.7_1_12:105583925-105589069:-|nuORF	MSMS	HCT116MG_D190212_S4	4	426.2463684082031	2	426.245944	850.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.387	1	49.025	48.525	49.525	-0.36213								0	0	0	0.8837	1	18317	18317		4.756	0	1		+		34057	9968	21575	21692	32781	32781					0.0461147102294035
TRARQKGL	8	Unmodified	_TRARQKGL_					0	0	0		ENST00000375199.7_1_1:19570195-19571411:-|nuORF	ENST00000375199.7_1_1:19570195-19571411:-|nuORF	ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	465.2854919433594	2	465.2856	928.556647	0.0039858	1.8545E-06	0.1971	9.1709E-05	0.20109	9.3564E-05	465.2856939863761	48.383	1.961	48.383	47.841	49.802	0					77	37	5	0	0	0	0.8506	1	18727	18727		5.2307	0	1	4724100000			34058	7506	21576	21693	32782	32782					0.08951117977085232
TREVRKWFSDR	11	Unmodified	_TREVRKWFSDR_					0	0	0		ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	MSMS	HCT116MG_D190212_S4	4	740.392333984375	2	740.394399	1478.77424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.239	1	37.857	37.357	38.357	-0.38283								0	0	0	0.95731	1	14007	14007		2.4985	1.169	1				34059	5324	21577	21694	32783	32783					0.05400843389020338
TRFSEAWEY	9	Unmodified	_TRFSEAWEY_					0	0	0		ZBED2|p.R177Gfs*15|1|0.26|ENSG00000177494|chr3:111593673-111593673|T/-|frameshift_variant;ENSG00000177494|ENST00000317012|ZBED2	ZBED2|p.R177Gfs*15|1|0.26|ENSG00000177494|chr3:111593673-111593673|T/-|frameshift_variant	ZBED2|p.R177Gfs*15|1|0.26|ENSG00000177494|chr3:111593673-111593673|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	594.7696533203125	2	594.769645	1187.52474	0.43882	0.00026099	-0.79354	-0.00047197	-0.35472	-0.00021098	594.7688696958894	44.259	0.26196	44.18	44.019	44.281	-0.078373					6	4	2	0	0	0	0.52876	1	16829	16829		15.248	3.0078	1	17851000			34060	5460	21578	21695	32784	32784					-0.06152339287382347
TRGAPIVL	8	Unmodified	_TRGAPIVL_					0	0	0			REV__nc|ENSG00000242441|Q9UNN4-2|GTF2A1L	REV__nc|ENSG00000242441|Q9UNN4-2|GTF2A1L	MSMS	HCT116MG_D190212_S2	2	413.7608337402344	2	413.760895	825.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.985	1	43.907	43.407	44.407	-0.078373								0	0	0	0.67883	1	16693	16693		32.305	0	1		+		34061	10739	21579	21696	32785	32785					0.08750409968274653
TRGAPIVL	8	Unmodified	_TRGAPIVL_					0	0	0			REV__nc|ENSG00000242441|Q9UNN4-2|GTF2A1L	REV__nc|ENSG00000242441|Q9UNN4-2|GTF2A1L	MULTI-MSMS	HCT116MG_D190212_S3	3	413.7608947753906	2	413.760895	825.507237	0.24136	9.9867E-05	-0.068207	-2.8221E-05	0.17316	7.1646E-05	413.7607769248732	44.266	0.25909	43.958	43.812	44.071	-0.30759					7	4	2	0	0	0	0.60054	1	16561	16561		32.305	0	1	9942200	+		34062	10739	21579	21696	32786	32786					0.08750409968274653
TRGAPIVL	8	Unmodified	_TRGAPIVL_					0	0	0			REV__nc|ENSG00000242441|Q9UNN4-2|GTF2A1L	REV__nc|ENSG00000242441|Q9UNN4-2|GTF2A1L	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	413.760895	825.507237	0.24136	9.9867E-05	-0.068207	-2.8221E-05	0.17316	7.1646E-05	413.7607769248732	44.266	0.25909	43.958	43.812	44.071	-0.30759	-0.043215	-7.1547E-06	NaN	32.305	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9942200	+		34063	10739	21579	21696							0.08750409968274653
TRGKKRSL	8	Unmodified	_TRGKKRSL_					0	0	0		nc|ENSG00000204815|Q96NG3-2|ODAD4	nc|ENSG00000204815|Q96NG3-2|ODAD4	nc|ENSG00000204815|Q96NG3-2|ODAD4	MULTI-MSMS	HCT116MG_D190212_S1	1	473.3016662597656	2	473.30125	944.587947	0.18182	8.6058E-05	0.20234	9.5767E-05	0.38416	0.00018182	473.30136644425545	57.074	0.93295	57.074	56.583	57.516	0					24	17	2	0	0	0	0.86564	1	21995	21995		2.5775	0	1	7363800			34064	9610	21580	21697	32787	32787					0.11343691011188639
TRGPVVRL	8	Unmodified	_TRGPVVRL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S1	1	449.284912109375	2	449.285069	896.555585	0.07738	3.4766E-05	0.11984	5.3841E-05	0.19722	8.8607E-05	449.2849671023588	31.779	0.2608	31.779	31.648	31.909	0					7	4	2	0	0	0	0.13819	1	11711	11711		86.332	41.925	1	23850000			34065	2370	21581	21698	32788	32788					0.10316903608190842
TRGPVVRL	8	Unmodified	_TRGPVVRL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	HCT116MG_D190212_S2	2	449.2853698730469	2	449.285069	896.555585	0.28825	0.0001295	-0.11276	-5.066E-05	0.17549	7.8844E-05	449.2849603741644	32.006	0.46683	31.776	31.631	32.098	-0.23009					11	8	2	0	0	0	0.065346	1	11824	11824		106.94	56.085	1	61294000			34066	2370	21581	21698	32789	32789					0.10316903608190842
TRGPVVRL	8	Unmodified	_TRGPVVRL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MSMS	HCT116MG_D190212_S3	3	449.2849426269531	2	449.285069	896.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.126	1	31.847	31.347	32.347	-0.27841								0	0	0	0.84187	1	11763	11763		19.257	6.7254	1				34067	2370	21581	21698	32790	32790					0.10316903608190842
TRHKYLYFA	9	Unmodified	_TRHKYLYFA_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MSMS	HCT116MG_D190212_S4	4	400.21771240234375	3	400.217102	1197.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.282	1	37.899	37.399	38.399	-0.38283								0	0	0	0.7694	1	14024	14024		2.9952	1.253	1		+		34068	13745	21582	21699	32791	32791					0.03856826979858852
TRHRRKRRC	9	Unmodified	_TRHRRKRRC_					0	0	0			REV__ENSG00000133937|ENST00000238558|GSC	REV__ENSG00000133937|ENST00000238558|GSC	MSMS	HCT116MG_D190212_S2	2	635.271728515625	2	634.870705	1267.72686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.424	1	10.154	9.6537	10.654	-0.27049								0	0	0	0.77025	1	3296	3296		0	0	1		+		34069	12041	21583	21700	32792	32792					0.1037033042771327
TRIAKRLRK	9	Unmodified	_TRIAKRLRK_					0	0	0			REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S1	1	381.2594299316406	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.356	1	64.356	63.856	64.856	0								0	0	0	0.77019	1	24829	24829		0.23584	0	1		+		34070	13512	21584	21701	32793	32793					0.1919959264469071
TRIAKRLRK	9	Unmodified	_TRIAKRLRK_					0	0	0			REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2	MSMS	HCT116MG_D190212_S2	2	381.2591552734375	3	381.259524	1140.75674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.162	1	63.033	62.533	63.533	-0.12924								0	0	0	0.77019	1	24489	24489		0.23584	0	1		+		34071	13512	21584	21701	32794	32794					0.1919959264469071
TRKIYSDEEE	10	Unmodified	_TRKIYSDEEE_					0	0	0		nc|ENSG00000042317|Q9P0W8-3|SPATA7;ENST00000556666.5_1_14:88883017-88904763:+|nuORF;nc|ENSG00000042317|Q9P0W8-2|SPATA7;ENSG00000042317|ENST00000393545|SPATA7	nc|ENSG00000042317|Q9P0W8-3|SPATA7	nc|ENSG00000042317|Q9P0W8-3|SPATA7	MSMS	HCT116MG_D190212_S4	4	423.8711853027344	3	423.870097	1268.58846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.04	1	13.879	13.379	14.379	-0.16089								0	0	0	0.96937	1	4429	4429		0.13989	0	1				34072	1009	21585	21702	32795	32795					-0.035090236409587305
TRKKKKLKKK	10	Unmodified	_TRKKKKLKKK_					0	0	0			REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|194|3|sense	REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.3860853119714591|0.1976016791882729|2.81|468.0|194|3|sense	MSMS	HCT116MG_D190212_S1	1	643.463134765625	2	643.461356	1284.90816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.719	1	19.719	19.219	20.219	0								0	0	0	0.97116	1	6854	6854		0	0	1		+		34073	16879	21586	21703	32796	32796					0.27710153952511973
TRKKTRKRR	9	Unmodified	_TRKKTRKRR_					0	0	0		ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	ENST00000361675.6_2_7:134618055-134618145:+|nuORF	MSMS	HCT116MG_D190212_S2	2	615.4041748046875	2	615.404904	1228.79525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.399	1	58.229	57.729	58.729	-0.1703								0	0	0	0.76978	1	22569	22569		1.6526	0.17072	1				34074	7362	21587	21704	32797	32797					0.19000898279182366
TRKLFAVIEKK	11	Unmodified	_TRKLFAVIEKK_					0	0	0			REV__ENSG00000160401|ENST00000373295|CFAP157	REV__ENSG00000160401|ENST00000373295|CFAP157	MSMS	HCT116MG_D190212_S1	1	444.9502258300781	3	444.950245	1331.82891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6292	1	8.6292	8.1292	9.1292	0								0	0	0	0.96208	1	2603	2603		0	0	1		+		34075	12830	21588	21705	32798	32798					0.17626462207704208
TRKLITSRS	9	Unmodified	_TRKLITSRS_					0	0	0		ENST00000312026.5_1_19:58421287-58421338:-|nuORF;ENST00000593873.5_3_19:58331259-58370135:+|nuORF	ENST00000312026.5_1_19:58421287-58421338:-|nuORF	ENST00000312026.5_1_19:58421287-58421338:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	531.3250122070312	2	531.324922	1060.63529	0.1772	9.4148E-05	-0.12348	-6.561E-05	0.053711	2.8538E-05	531.3249060704293	51.272	1.7041	51.272	50.73	52.434	0					80	32	6	0	0	0	0.71345	1	19711	19711		4.3292	0	1	4957800000			34076	7062	21589	21706	32799	32799					0.1073992549149807
TRKWLRQPRRY	11	Unmodified	_TRKWLRQPRRY_					0	0	0			REV__TIMM44|p.R208W|1|0.3|ENSG00000104980|chr19:7933925-7933925|G/A|missense_variant	REV__TIMM44|p.R208W|1|0.3|ENSG00000104980|chr19:7933925-7933925|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	780.1231079101562	2	780.455125	1558.8957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.589	1	49.227	48.727	49.727	-0.36213								0	0	0	0.95636	1	18399	18399		2.9952	2.6882	1		+		34077	17636	21590	21707	32800	32800					0.1386051054219024
TRLAPLERR	9	Unmodified	_TRLAPLERR_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MSMS	HCT116MG_D190212_S4	4	371.22723388671875	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.812	1	41.436	40.936	41.936	-0.37637								0	0	0	0.77018	1	15344	15344		0.26902	0	1		+		34078	14150	21591	21708	32801	32801					0.1112703410267386
TRLAPLERR	9	Unmodified	_TRLAPLERR_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MSMS	HCT116MG_D190212_S4	4	371.2275085449219	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.136	1	43.763	43.263	44.263	-0.37373								0	0	0	0.77018	1	16249	16249		0.26902	0	1		+		34079	14150	21591	21708	32802	32802					0.1112703410267386
TRLRKLPDI	9	Unmodified	_TRLRKLPDI_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MSMS	HCT116MG_D190212_S4	4	371.2368469238281	3	371.236385	1110.68733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.189	1	60.929	60.429	61.429	-0.2602								0	0	0	0.76998	1	23077	23077		0.96228	0	1				34080	5435	21592	21709	32803	32803					0.13641088905274046
TRLWFHHCRH	10	Unmodified	_TRLWFHHCRH_					0	0	0			REV__ENST00000569223.1_1_15:42234159-42234285:-|nuORF	REV__ENST00000569223.1_1_15:42234159-42234285:-|nuORF	MSMS	HCT116MG_D190212_S1	1	696.8471069335938	2	696.846365	1391.67818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.021	1	11.021	10.521	11.521	0								0	0	0	0.97116	1	3431	3431		0	0	1		+		34081	16567	21593	21710	32804	32804					-0.001995829320549092
TRLWFHHCRH	10	Unmodified	_TRLWFHHCRH_					0	0	0			REV__ENST00000569223.1_1_15:42234159-42234285:-|nuORF	REV__ENST00000569223.1_1_15:42234159-42234285:-|nuORF	MSMS	HCT116MG_D190212_S1	1	696.8471069335938	2	696.846365	1391.67818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.579	1	11.579	11.079	12.079	0								0	0	0	0.97116	1	3657	3657		0	0	1		+		34082	16567	21593	21710	32805	32805					-0.001995829320549092
TRMILELK	8	Unmodified	_TRMILELK_					0	0	0			REV__CYP4F12|p.A508T|1|0.26|ENSG00000186204|chr19:15697032-15697032|G/A|missense_variant	REV__CYP4F12|p.A508T|1|0.26|ENSG00000186204|chr19:15697032-15697032|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	502.3005676269531	2	502.30207	1002.58959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.433	1	58.144	57.644	58.644	-0.28879								0	0	0	0.8837	1	21962	21962		4.3292	0	1		+		34083	10323	21594	21711	32806	32806					0.08839563984906817
TRMRHVISY	9	Unmodified	_TRMRHVISY_					0	0	0		ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	ENST00000498309.1_1_5:132202377-132202798:+|nuORF	ENST00000498309.1_1_5:132202377-132202798:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	581.8109741210938	2	581.811125	1161.6077	0.60607	0.00035262	-0.19495	-0.00011342	0.41112	0.00023919	581.8109881029212	24.751	0.20924	24.751	24.621	24.83	0					6	3	2	0	0	0	0.053079	1	8885	8885		73.196	47.797	1	13913000			34084	4696	21595	21712	32807	32807					0.033356989596313724
TRMRHVISY	9	Unmodified	_TRMRHVISY_					0	0	0		ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	ENST00000498309.1_1_5:132202377-132202798:+|nuORF	ENST00000498309.1_1_5:132202377-132202798:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	581.8115844726562	2	581.811125	1161.6077	0.50561	0.00029417	0.07851	4.5678E-05	0.58412	0.00033985	581.8111393153088	25.321	0.31277	24.945	24.816	25.129	-0.37521					13	5	3	0	0	0	0.043159	1	9121	9121		78.06	59.914	1	107510000			34085	4696	21595	21712	32808	32808					0.033356989596313724
TRMRHVISY	9	Unmodified	_TRMRHVISY_					0	0	0		ENST00000498309.1_1_5:132202377-132202798:+|nuORF;ENSG00000164405|ENST00000378670|UQCRQ	ENST00000498309.1_1_5:132202377-132202798:+|nuORF	ENST00000498309.1_1_5:132202377-132202798:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	388.209716796875	3	388.209842	1161.6077	0.065293	2.5347E-05	0.024323	9.4424E-06	0.089616	3.479E-05	388.20978474032734	25.355	0.36496	24.98	24.816	25.181	-0.37521					14	6	3	0	0	0	0.10244	1	9123	9123		46.022	33.15	1	100890000			34086	4696	21595	21712	32809	32809					0.033356989596313724
TRMSTVSEL	9	Unmodified	_TRMSTVSEL_					0	0	0		nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C;KIF2C|p.T150Hfs*2|1|0.06|ENSG00000142945|chr1:44753138-44753139|-/A|frameshift_variant;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	nc|ENSG00000142945|Q99661-2|KIF2C	nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	HCT116MG_D190212_S1	1	512.2611694335938	2	512.260599	1022.50665	0.40395	0.00020693	0.64373	0.00032976	1.0477	0.00053669	512.2606916997985	34.207	0.15656	34.207	34.076	34.233	0					4	2	2	0	0	0	0.16306	1	12690	12690		45.7	7.5484	1	5831000			34087	3781	21596	21713	32810	32810					-0.0037079753373063795
TRNDYVMMY	9	Unmodified	_TRNDYVMMY_					0	0	0		XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant;XPO6|p.F130Lfs*7|1|0.24|ENSG00000169180|chr16:28175913-28175913|A/-|frameshift_variant;nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	596.7598266601562	2	596.759909	1191.50526	0.45194	0.0002697	-0.050442	-3.0102E-05	0.4015	0.0002396	596.7596420631304	42.874	0.26056	42.874	42.743	43.003	0					9	4	3	0	0	0	0.28073	1	16214	16214		32.786	12.332	1	9874200			34088	5052	21597	21714	32811	32811					-0.08282754894139543
TRNDYVMMY	9	Unmodified	_TRNDYVMMY_					0	0	0		XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant;XPO6|p.F130Lfs*7|1|0.24|ENSG00000169180|chr16:28175913-28175913|A/-|frameshift_variant;nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	596.7598876953125	2	596.759909	1191.50526	0.90839	0.00054209	-0.73021	-0.00043576	0.17818	0.00010633	596.7596557500378	42.785	0.36164	42.715	42.533	42.895	-0.069984					15	6	4	0	0	0	0.034046	1	16204	16204		82.529	60.783	1	106860000			34089	5052	21597	21714	32812	32812					-0.08282754894139543
TRNDYVMMY	9	Unmodified	_TRNDYVMMY_					0	0	0		XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant;XPO6|p.F130Lfs*7|1|0.24|ENSG00000169180|chr16:28175913-28175913|A/-|frameshift_variant;nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	596.7606201171875	2	596.759909	1191.50526	0.66591	0.00039739	0.52177	0.00031137	1.1877	0.00070876	596.7601232156103	43.144	0.32663	42.839	42.706	43.033	-0.30472					26	11	3	0	0	0	0.0062667	2	16069	16069;16150		126.57	92.463	1	48043000			34090	5052	21597	21714	32813;32814	32813					-0.08282754894139543
TRNDYVMMY	9	Unmodified	_TRNDYVMMY_					0	0	0		XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant;XPO6|p.F130Lfs*7|1|0.24|ENSG00000169180|chr16:28175913-28175913|A/-|frameshift_variant;nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	597.2620849609375	2	596.759909	1191.50526	1.0261	0.00061232	0.34346	0.00020497	1.3695	0.00081728	596.7601146634422	43.264	0.18321	42.89	42.795	42.978	-0.37433					22	16	2	0	0	0	0.023778	1	15899	15899		92.653	72.2	1	17815000			34091	5052	21597	21714	32815	32815					-0.08282754894139543
TRNDYVMMY	9	Oxidation (M)	_TRNDYVMM(Oxidation (M))Y_		TRNDYVM(0.005)M(0.995)Y		TRNDYVM(-23)M(23)Y	0	0	1		XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant;XPO6|p.F130Lfs*7|1|0.24|ENSG00000169180|chr16:28175913-28175913|A/-|frameshift_variant;nc|ENSG00000169180|Q96QU8-2|XPO6;XPO6|p.P1120Lfs*4|1|0.28|ENSG00000169180|chr16:28098557-28098557|G/-|frameshift_variant;ENSG00000169180|ENST00000304658|XPO6	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	XPO6|p.T131Yfs*2|1|0.27|ENSG00000169180|chr16:28175912-28175913|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	604.7586059570312	2	604.757366	1207.50018	0.38313	0.0002317	-0.20421	-0.0001235	0.17892	0.0001082	604.7577344301396	36.576	0.36453	36.275	36.093	36.457	-0.30113					11	6	3	0	0	0	0.11023	1	13526	13526		56.177	39.064	2	12770000			34092	5052	21597	21715	32816	32816		109			-0.09527058756748374
TRNMYIWQQHE	11	Unmodified	_TRNMYIWQQHE_					0	0	0			REV__KIT|p.N511Kfs*17|1|0.06|ENSG00000157404|chr4:54726041-54726042|-/AG|frameshift_variant	REV__KIT|p.N511Kfs*17|1|0.06|ENSG00000157404|chr4:54726041-54726042|-/AG|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	502.5682373046875	3	502.569987	1504.68813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.125	1	57.955	57.455	58.455	-0.1703								0	0	0	0.96014	1	22456	22456		1.0136	0.50762	1		+		34093	12750	21598	21716	32817	32817					-0.04402484507977533
TRPAEEPQPSA	11	Unmodified	_TRPAEEPQPSA_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	HCT116MG_D190212_S4	4	591.79150390625	2	591.791109	1181.56767	0.69636	0.0004121	-0.53025	-0.0003138	0.16611	9.8301E-05	591.7910429724484	18.926	0.57176	18.739	18.297	18.869	-0.18674					14	10	2	0	0	0	0.61797	1	6372	6372		33.445	13.03	1	1969000			34094	3364	21599	21717	32818	32818					-0.015855692299510338
TRPARPPG	8	Unmodified	_TRPARPPG_					0	0	0			REV__ENST00000511998.1_1_3:129034238-129036147:+|nuORF	REV__ENST00000511998.1_1_3:129034238-129036147:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	426.2459716796875	2	426.245944	850.477334	0.0061851	2.6364E-06	0.82764	0.00035278	0.83383	0.00035542	426.24623211540654	47.282	0.99082	47.282	46.751	47.742	0					51	19	4	0	0	0	0.86858	1	17838	17838		2.0598	0	1	2378400000	+		34095	16188	21600	21718	32819	32819					0.046114710229517186
TRPARPPG	8	Unmodified	_TRPARPPG_					0	0	0			REV__ENST00000511998.1_1_3:129034238-129036147:+|nuORF	REV__ENST00000511998.1_1_3:129034238-129036147:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	426.2460021972656	2	426.245944	850.477334	0.19965	8.5101E-05	0.10402	4.4339E-05	0.30368	0.00012944	426.24591386461924	48.274	1.3554	47.958	47.514	48.87	-0.31596					53	25	4	0	0	0	0.86858	1	18071	18071		2.0598	0	1	102530000	+		34096	16188	21600	21718	32820	32820					0.046114710229517186
TRQGGNAGARR	11	Unmodified	_TRQGGNAGARR_					0	0	0		ENST00000521198.6_1_8:67624835-67705866:+|nuORF	ENST00000521198.6_1_8:67624835-67705866:+|nuORF	ENST00000521198.6_1_8:67624835-67705866:+|nuORF	MSMS	HCT116MG_D190212_S2	2	381.8746643066406	3	381.87451	1142.6017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.73838	1	0.73212	0.23212	1.2321	-0.00626								0	0	0	0.96208	1	248	248		0	0	1				34097	8555	21601	21719	32821	32821					0.03610316772301303
TRQQWQPANPL	11	Unmodified	_TRQQWQPANPL_					0	0	0		ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	670.35107421875	2	669.849293	1337.68403	0.70703	0.0004736	-1.4963	-0.0010023	-0.7893	-0.00052871	670.3494659875557	45.386	0.4103	45.014	44.884	45.294	-0.37266					12	7	2	0	0	0	0.73844	1	16801	16801		7.609	0.88579	1	2195600			34098	7252	21602	21720	32822	32822					0.028697940605979966
TRQQWQPANPL	11	Unmodified	_TRQQWQPANPL_					0	0	0		ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	669.849293	1337.68403	0.84086	0.00056325	-1.7874	-0.0011973	-0.94656	-0.00063405	669.848541999915	45.381	0.26106	45.07	44.939	45.2	-0.31094	0.028072	-0.00031082	NaN	7.609	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1971400			34099	7252	21602	21720							0.028697940605979966
TRRELRRREV	10	Unmodified	_TRRELRRREV_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	HCT116MG_D190212_S1	1	457.6079406738281	3	457.607764	1369.80146	0.042309	1.9361E-05	0.73594	0.00033677	0.77824	0.00035613	457.60805932527006	51.765	0.36636	51.765	51.549	51.916	0					13	6	3	0	0	0	0.88823	1	19798	19798		0.62683	0.17231	1	39121000	+		34100	12015	21603	21721	32823	32823					0.1313537172004544
TRREMRRK	8	Unmodified	_TRREMRRK_					0	0	0		ENST00000287713.6_1_1:183387562-183387700:-|nuORF	ENST00000287713.6_1_1:183387562-183387700:-|nuORF	ENST00000287713.6_1_1:183387562-183387700:-|nuORF	MSMS	HCT116MG_D190212_S1	1	566.828125	2	566.82764	1131.64073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.75	1	13.75	13.25	14.25	0								0	0	0	0.8837	1	4475	4475		0.69038	0	1				34101	6952	21604	21722	32824	32824					0.08017325802347841
TRRKKRVKA	9	Unmodified	_TRRKKRVKA_					0	0	0		ENST00000463639.1_1_6:32945663-32945765:+|nuORF	ENST00000463639.1_1_6:32945663-32945765:+|nuORF	ENST00000463639.1_1_6:32945663-32945765:+|nuORF	MSMS	HCT116MG_D190212_S1	1	571.884033203125	2	571.883273	1141.75199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.035	1	11.035	10.535	11.535	0								0	0	0	0.77025	1	3437	3437		0	0	1				34102	8074	21605	21723	32825	32825					0.1867870850194322
TRRKQRRRWLL	11	Unmodified	_TRRKQRRRWLL_					0	0	0			REV__ENSG00000197471|ENST00000652691|SPN	REV__ENSG00000197471|ENST00000652691|SPN	MULTI-MSMS	HCT116MG_D190212_S1	1	523.6629638671875	3	523.662203	1567.96478	0.28064	0.00014696	0.3797	0.00019883	0.66034	0.0003458	523.6623067503273	60.958	1.705	60.958	60.491	62.196	0					48	32	2	0	0	0	0.74191	3	23389	23389;23659;23720		0	0	1	23776000	+		34103	14075	21606	21724	32826;32827;32828	32826					0.2035159456177098
TRRKQRRRWLL	11	Unmodified	_TRRKQRRRWLL_					0	0	0			REV__ENSG00000197471|ENST00000652691|SPN	REV__ENSG00000197471|ENST00000652691|SPN	MULTI-MSMS	HCT116MG_D190212_S1	1	784.9893188476562	2	784.989666	1567.96478	0.74368	0.00058378	0.26196	0.00020564	1.0056	0.00078942	784.9895270598296	60.899	2.1726	60.899	60.335	62.508	0					94	41	3	0	0	0	0.74191	3	23465	23465;23716;23953		0	0	1	37892000	+		34104	14075	21606	21724	32829;32830;32831	32829					0.2035159456177098
TRRLRLSR	8	Unmodified	_TRRLRLSR_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MSMS	HCT116MG_D190212_S1	1	353.228515625	3	353.228224	1056.66284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.074	1	59.074	58.574	59.574	0								0	0	0	0.8837	1	22772	22772		0	0	1				34105	4474	21607	21725	32832	32832					0.13677873542383168
TRRRGPGRR	9	Unmodified	_TRRRGPGRR_					0	0	0		ENST00000474329.2_1_19:56728686-56728920:-|nuORF	ENST00000474329.2_1_19:56728686-56728920:-|nuORF	ENST00000474329.2_1_19:56728686-56728920:-|nuORF	MSMS	HCT116MG_D190212_S4	4	371.10107421875	3	371.227106	1110.65949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1152	1	6.8651	6.3651	7.3651	-0.25015								0	0	0	0.77025	1	2177	2177		0	0	1				34106	8185	21608	21726	32833	32833					0.10858623488411467
TRRRMRPR	8	Unmodified	_TRRRMRPR_					0	0	0		ENST00000378827.4_1_20:6748685-6748922:+|nuORF	ENST00000378827.4_1_20:6748685-6748922:+|nuORF	ENST00000378827.4_1_20:6748685-6748922:+|nuORF	MSMS	HCT116MG_D190212_S1	1	376.892822265625	3	376.892959	1127.65705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.855	1	11.855	11.355	12.355	0								0	0	0	0.8837	1	3767	3767		0	0	1				34107	7545	21609	21727	32834	32834					0.09832451759075411
TRRRRRWRRRP	11	Unmodified	_TRRRRRWRRRP_					0	0	0			REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF	REV__ENST00000442267.2_1_4:141622749-141677260:-|nuORF	MSMS	HCT116MG_D190212_S2	2	826.50927734375	2	826.506881	1650.99921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.728	1	10.454	9.9545	10.954	-0.27365								0	0	0	0.96208	1	3412	3412		0	0	1		+		34108	15654	21610	21728	32835	32835					0.19974855493205723
TRRSRLKRS	9	Unmodified	_TRRSRLKRS_					0	0	0		nc|ENSG00000283228|O00305-4|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;ENSG00000182389|ENST00000539935|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	nc|ENSG00000283228|O00305-4|CACNB4	MSMS	HCT116MG_D190212_S3	3	580.3615112304688	2	580.360162	1158.70577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.077	1	59.825	59.325	60.325	-0.25233								0	0	0	0.77012	1	22895	22895		0.45834	0	1				34109	5669	21611	21729	32836	32836					0.13276643599851923
TRRVRPPLSV	10	Unmodified	_TRRVRPPLSV_					0	0	0		nc|ENSG00000027869|Q9NP31-2|SH2D2A	nc|ENSG00000027869|Q9NP31-2|SH2D2A	nc|ENSG00000027869|Q9NP31-2|SH2D2A	MULTI-MSMS	HCT116MG_D190212_S4	4	590.8671875	2	590.867289	1179.72002	0.84166	0.00049731	-0.91439	-0.00054029	-0.072731	-4.2974E-05	590.8664639975314	55.329	0.52089	55.012	54.719	55.24	-0.31774					28	9	4	0	0	0	0.88777	1	20675	20675		3.2813	0	1	29247000			34110	9369	21612	21730	32837	32837					0.13735296028107769
TRSRTILA	8	Unmodified	_TRSRTILA_					0	0	0		THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant;THSD7B|p.A1522Lfs*3|1|0.32|ENSG00000144229|chr2:137663476-137663476|A/-|frameshift_variant;ENSG00000144229|ENST00000409968|THSD7B;THSD7B|p.L635P|1|0.27|ENSG00000144229|chr2:137231224-137231224|T/C|missense_variant;THSD7B|p.G671Afs*9|1|0.13|ENSG00000144229|chr2:137232992-137232992|G/-|frameshift_variant	THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant	THSD7B|p.A1522Sfs*2|1|0.16|ENSG00000144229|chr2:137663475-137663476|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	459.28564453125	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.996	1	45.996	45.496	46.496	0								0	0	0	0.84187	1	17440	17440		19.257	1.1106	1				34111	3855	21613	21731	32838	32838					0.08380295882955124
TRTRKKKKK	9	Unmodified	_TRTRKKKKK_					0	0	0			REV__ENST00000428865.2_1_6:74405214-74405695:-|nuORF	REV__ENST00000428865.2_1_6:74405214-74405695:-|nuORF	MSMS	HCT116MG_D190212_S4	4	587.3992309570312	2	587.398756	1172.78296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.789	1	47.42	46.92	47.92	-0.36907								0	0	0	0.77025	1	17677	17677		0	0	1		+		34112	15571	21614	21732	32839	32839					0.2034786181616255
TRTRKKKKKKL	11	Unmodified	_TRTRKKKKKKL_					0	0	0			REV__ENST00000428865.2_1_6:74405214-74405695:-|nuORF	REV__ENST00000428865.2_1_6:74405214-74405695:-|nuORF	MSMS	HCT116MG_D190212_S1	1	707.989013671875	2	707.988269	1413.96199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.848	1	32.848	32.348	33.348	0								0	0	0	0.96208	1	12136	12136		0	0	1		+		34113	15571	21615	21733	32840	32840					0.2715632638423813
TRVDTILEF	9	Unmodified	_TRVDTILEF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S1	1	547.2979125976562	2	547.298039	1092.58152	0.61864	0.00033858	-0.86627	-0.00047411	-0.24763	-0.00013552	547.2976050379036	54.052	0.20384	54.052	53.924	54.128	0					8	3	3	0	0	0	0.095731	1	20739	20739		72.968	16.791	1	39735000			34114	1425	21616	21734	32841	32841					0.0389370826915183
TRVDTILEF	9	Unmodified	_TRVDTILEF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S2	2	547.2982177734375	2	547.298039	1092.58152	0.4388	0.00024015	-0.31892	-0.00017455	0.11987	6.5607E-05	547.297707108376	54.314	0.41053	54.125	53.842	54.252	-0.1894					16	7	4	0	0	0	0.018739	1	20910	20910		96.367	46.434	1	108500000			34115	1425	21616	21734	32842	32842					0.0389370826915183
TRVPLRLP	8	Unmodified	_TRVPLRLP_					0	0	0			REV__ENST00000484855.2_1_20:44525607-44525832:+|nuORF	REV__ENST00000484855.2_1_20:44525607-44525832:+|nuORF	MSMS	HCT116MG_D190212_S3	3	476.3064270019531	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.322	1	49.006	48.506	49.506	-0.31596								0	0	0	0.8837	1	18570	18570		2.8892	0	1		+		34116	15978	21617	21735	32843	32843					0.12525763159305825
TRWPGFYIL	9	Unmodified	_TRWPGFYIL_					0	0	0		ENST00000587491.5_1_17:75207779-75210102:+|nuORF;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000588721.1_1_17:75208810-75210102:+|nuORF	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	ENST00000587491.5_1_17:75207779-75210102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	576.8143310546875	2	576.813659	1151.61277	0.46118	0.00026602	0.060316	3.4791E-05	0.5215	0.00030081	576.8137305194879	57.775	0.25987	57.6	57.418	57.678	-0.17494					9	4	3	0	0	0	0.053544	1	22318	22318		72.968	24.622	1	19351000			34117	3041	21618	21736	32844	32844					0.04302326093898046
TRYLKKLLFI	10	Unmodified	_TRYLKKLLFI_					0	0	0			REV__ENST00000397137.5_2_20:36146318-36146510:-|nuORF	REV__ENST00000397137.5_2_20:36146318-36146510:-|nuORF	MSMS	HCT116MG_D190212_S2	2	432.280029296875	3	432.279703	1293.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.86	1	42.79	42.29	43.29	-0.069984								0	0	0	0.96836	1	16234	16234		0.62683	0	1		+		34118	15368	21619	21737	32845	32845					0.18212265184433818
TSAAAESITP	10	Unmodified	_TSAAAESITP_					0	0	0		ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	HCT116MG_D190212_S1	1	947.4688720703125	1	947.468017	946.460741	0.81705	0.00077413	-0.10693	-0.00010131	0.71012	0.00067282	947.4678150439225	23.028	0.62504	23.028	22.689	23.314	0					19	11	2	0	0	0	0.095673	1	8172	8172		74.929	1.9611	1	11301000			34119	2836	21620	21738	32846	32846					-0.014631194443268214
TSAAPPPQPQP	11	Unmodified	_TSAAPPPQPQP_					0	0	0		ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	MSMS	HCT116MG_D190212_S3	3	545.7783813476562	2	545.780013	1089.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.236	1	24.175	23.675	24.675	-0.061449								0	0	0	0.92235	1	8597	8597		17.113	1.2657	1				34120	4800	21621	21739	32847	32847					0.0042825109228488145
TSAAPQEREW	10	Unmodified	_TSAAPQEREW_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MULTI-MSMS	HCT116MG_D190212_S4	4	587.7787475585938	2	587.778002	1173.54145	0.48108	0.00028277	-0.25374	-0.00014915	0.22733	0.00013362	587.7779629961589	34.706	1.0263	34.32	33.776	34.802	-0.38564					29	19	2	0	0	0	0.83158	1	12812	12812		9.3831	0	1	3225700	+		34121	12832	21622	21740	32848	32848					-0.038378384014322364
TSAEELEHAQR	11	Unmodified	_TSAEELEHAQR_					0	0	0		EVA1A|p.R120H|1|0.44|ENSG00000115363|chr2:75493336-75493336|C/T|missense_variant	EVA1A|p.R120H|1|0.44|ENSG00000115363|chr2:75493336-75493336|C/T|missense_variant	EVA1A|p.R120H|1|0.44|ENSG00000115363|chr2:75493336-75493336|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	635.804931640625	2	635.804748	1269.59494	0.52483	0.00033369	0.18367	0.00011678	0.7085	0.00045046	635.804802451616	24.12	1.0392	23.861	23.209	24.248	-0.25816					47	19	4	0	0	0	0.7259	1	8544	8544		12.241	0	1	34433000			34122	9142	21623	21741	32849	32849					-0.029070856895941688
TSAEGLQAQWV	11	Unmodified	_TSAEGLQAQWV_					0	0	0			REV__GPRIN2|p.P364Qfs*3|1|0.3|ENSG00000204175|chr10:46549646-46549646|G/-|frameshift_variant	REV__GPRIN2|p.P364Qfs*3|1|0.3|ENSG00000204175|chr10:46549646-46549646|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	595.2959594726562	2	595.296027	1188.5775	0.93298	0.0005554	-0.67105	-0.00039947	0.26192	0.00015592	595.2956508970792	28.704	0.62316	28.363	28.055	28.678	-0.34059					20	11	2	0	0	0	0.71776	1	10274	10274		15.248	1.6336	1	4075300	+		34123	14183	21624	21742	32850	32850					-0.009243812246040761
TSAESPKPHQS	11	Unmodified	_TSAESPKPHQS_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	584.783935546875	2	584.783284	1167.55202	0.39904	0.00023335	1.2587	0.00073604	1.6577	0.00096939	584.7839022765602	22.588	0.61301	22.569	22.231	22.844	-0.018869					15	11	2	0	0	0	0.71532	1	7960	7960		16.149	0.90062	1	3857300	+		34124	12932	21625	21743	32851	32851					-0.025058557469947118
TSAESTFLKPL	11	Unmodified	_TSAESTFLKPL_					0	0	0		ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	MSMS	HCT116MG_D190212_S4	4	597.3244018554688	2	597.324254	1192.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.154	1	27.823	27.323	28.323	-0.33138								0	0	0	0.94538	1	10112	10112		8.7454	0.58988	1				34125	8037	21626	21744	32852	32852					0.04534246612092829
TSAFFFYF	8	Unmodified	_TSAFFFYF_					0	0	0			REV__ABCA6|p.I1144Mfs*6|1|0.11|ENSG00000154262|chr17:69091239-69091240|-/CTTTTCCC|frameshift_variant	REV__ABCA6|p.I1144Mfs*6|1|0.11|ENSG00000154262|chr17:69091239-69091240|-/CTTTTCCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	515.2400512695312	2	515.239461	1028.46437	0.093602	4.8228E-05	0.87293	0.00044977	0.96653	0.00049799	515.2399235939764	18.115	1.0368	17.94	17.272	18.309	-0.17501					37	19	3	0	0	0	0.77285	1	6156	6156		14.582	1.5392	1	3475400	+		34126	9820	21627	21745	32853	32853					-0.04872404879802161
TSAGRPLEEP	10	Unmodified	_TSAGRPLEEP_					0	0	0			REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	528.7698974609375	2	528.769645	1055.52474	0.41476	0.00021931	-0.29385	-0.00015538	0.12091	6.3934E-05	528.7695517539369	18.767	0.26028	18.836	18.667	18.927	0.069159					6	4	2	0	0	0	0.58749	1	6413	6413		29.082	2.8134	1	2861700	+		34127	17052	21628	21746	32854	32854					-0.0008033928738768736
TSAGRPLEEP	10	Unmodified	_TSAGRPLEEP_					0	0	0			REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	REV__MYO9B|p.A2017Pfs*36|1|0.42|ENSG00000099331|chr19:17211760-17211760|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	528.769645	1055.52474	0.3956	0.00020918	0.62772	0.00033192	1.0233	0.0005411	528.7698063851592	19.045	0.31193	18.858	18.713	19.025	-0.18674	0.011029	0.00039855	NaN	29.082	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370700	+		34128	17052	21628	21746							-0.0008033928738768736
TSAHQYLPP	9	Unmodified	_TSAHQYLPP_					0	0	0		NUDT13|p.A68P|1|0.35|ENSG00000166321|chr10:73120136-73120136|G/C|missense_variant	NUDT13|p.A68P|1|0.35|ENSG00000166321|chr10:73120136-73120136|G/C|missense_variant	NUDT13|p.A68P|1|0.35|ENSG00000166321|chr10:73120136-73120136|G/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	506.7564392089844	2	507.256174	1012.49779	0.37373	0.00018958	-2.6908	-0.0013649	-2.3171	-0.0011753	507.2550319894246	23.619	0.51874	23.236	22.884	23.403	-0.38324					13	9	2	0	0	0	0.22781	1	8374	8374		16.942	8.7868	1	9759800			34129	9710	21629	21747	32855	32855					-0.007954031079066226
TSAHRPPPP	9	Unmodified	_TSAHRPPPP_					0	0	0			REV__nc|ENSG00000055118|Q12809-5|KCNH2	REV__nc|ENSG00000055118|Q12809-5|KCNH2	MSMS	HCT116MG_D190212_S4	4	480.25543212890625	2	480.256508	958.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.28	1	27.949	27.449	28.449	-0.33138								0	0	0	0.76641	1	10162	10162		13.508	2.3934	1		+		34130	10644	21630	21748	32856	32856					0.017554363318026844
TSAHYFNPLDA	11	Unmodified	_TSAHYFNPLDA_					0	0	0		ENST00000522850.1_1_8:103876781-103877398:+|nuORF	ENST00000522850.1_1_8:103876781-103877398:+|nuORF	ENST00000522850.1_1_8:103876781-103877398:+|nuORF	MSMS	HCT116MG_D190212_S4	4	618.2884521484375	2	618.288202	1234.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.151	1	23.893	23.393	24.393	-0.25816								0	0	0	0.93717	1	8494	8494		13.042	0.80181	1				34131	8567	21631	21749	32857	32857					-0.04604667741614321
TSAIPRMPQ	9	Unmodified	_TSAIPRMPQ_					0	0	0			REV__nc|ENSG00000143416|Q13228-4|SELENBP1	REV__nc|ENSG00000143416|Q13228-4|SELENBP1	MSMS	HCT116MG_D190212_S3	3	500.7639465332031	2	500.765852	999.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.018	1	23.957	23.457	24.457	-0.061449								0	0	0	0.53872	1	8509	8509		26.884	4.1474	1		+		34132	17152	21632	21750	32858	32858					0.017372299113503686
TSAIRVGFITY	11	Unmodified	_TSAIRVGFITY_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MSMS	HCT116MG_D190212_S3	3	614.3385009765625	2	614.340238	1226.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.243	1	35.943	35.443	36.443	-0.30042								0	0	0	0.95113	1	13385	13385		5.7319	0.83484	1				34133	4096	21633	21751	32859	32859					0.061656590859229254
TSAISRCHDGP	11	Unmodified	_TSAISRCHDGP_					0	0	0		TNS4|p.R157I|1|0.34|ENSG00000131746|chr17:40488939-40488939|C/A|missense_variant	TNS4|p.R157I|1|0.34|ENSG00000131746|chr17:40488939-40488939|C/A|missense_variant	TNS4|p.R157I|1|0.34|ENSG00000131746|chr17:40488939-40488939|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	572.264892578125	2	572.264204	1142.51386	0.58268	0.00033345	0.25579	0.00014638	0.83847	0.00047983	572.2645547344675	20.736	0.77921	20.526	20.084	20.863	-0.20959					20	14	2	0	0	0	0.72373	1	7135	7135		13.042	0.51092	1	1756300			34134	18281	21634	21752	32860	32860					-0.05170064933327012
TSAKTKVMWWW	11	Unmodified	_TSAKTKVMWWW_					0	0	0			REV__ENST00000310823.7_1_2:9676859-9676928:-|nuORF	REV__ENST00000310823.7_1_2:9676859-9676928:-|nuORF	MSMS	HCT116MG_D190212_S4	4	712.2259521484375	2	712.36319	1422.71183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.785	1	24.516	24.016	25.016	-0.26881								0	0	0	0.95113	1	8751	8751		5.7319	0	1		+		34135	14831	21635	21753	32861	32861					0.01737980996472288
TSALGRLIPEV	11	Unmodified	_TSALGRLIPEV_					0	0	0		ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	MSMS	HCT116MG_D190212_S4	4	578.338623046875	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.388	1	34.003	33.503	34.503	-0.38558								0	0	0	0.95113	1	12555	12555		5.7319	0	1				34136	1375	21636	21754	32862	32862					0.09477659085905543
TSALGRLIPEV	11	Unmodified	_TSALGRLIPEV_					0	0	0		ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	MSMS	HCT116MG_D190212_S4	4	578.3387451171875	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.275	1	36.891	36.391	37.391	-0.3839								0	0	0	0.95636	1	13673	13673		2.9952	0	1				34137	1375	21636	21754	32863	32863					0.09477659085905543
TSALGRLIPEV	11	Unmodified	_TSALGRLIPEV_					0	0	0		ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	MSMS	HCT116MG_D190212_S4	4	578.3385009765625	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.466	1	38.084	37.584	38.584	-0.38163								0	0	0	0.95636	1	14098	14098		2.9952	0	1				34138	1375	21636	21754	32864	32864					0.09477659085905543
TSALLHELSND	11	Unmodified	_TSALLHELSND_					0	0	0		ENST00000474988.5_1_6:36410818-36454949:+|nuORF	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	MSMS	HCT116MG_D190212_S3	3	600.29931640625	2	600.298767	1198.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.001	1	22.002	21.502	22.502	0.00074577								0	0	0	0.9387	1	7696	7696		12.241	0	1				34139	8196	21637	21755	32865	32865					-0.008367024327526451
TSALPSPGLP	10	Unmodified	_TSALPSPGLP_					0	0	0			REV__ENST00000473583.1_1_3:52324300-52324483:+|nuORF	REV__ENST00000473583.1_1_3:52324300-52324483:+|nuORF	MSMS	HCT116MG_D190212_S4	4	470.2608947753906	2	470.260925	938.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.076	1	28.735	28.235	29.235	-0.34059								0	0	0	0.82636	1	10484	10484		25.399	0.72543	1		+		34140	15891	21638	21756	32866	32866					0.035583651776164515
TSALSHDRVAQ	11	Unmodified	_TSALSHDRVAQ_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-SECPEP	HCT116MG_D190212_S4	4	593.1572265625	2	592.804551	1183.59455	0.80571	0.00047763	-0.13123	-7.7795E-05	0.67448	0.00039983	592.8048429928394	29.274	0.51928	28.924	28.617	29.137	-0.34921					12	9	2	0	0	0	0.36397	1	10601	10601		2.7352	0	1	2673200	+		34141	10761	21639	21757	32867	32867					0.01009539381243485
TSALSKKP	8	Unmodified	_TSALSKKP_					0	0	0		ENSG00000135314|ENST00000257765|KHDC1;nc|ENSG00000135314|Q4VXA5|KHDC1	ENSG00000135314|ENST00000257765|KHDC1	ENSG00000135314|ENST00000257765|KHDC1	MSMS	HCT116MG_D190212_S4	4	416.2490539550781	2	416.25036	830.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.472	1	21.254	20.754	21.754	-0.21832								0	0	0	0.8837	1	7414	7414		5.2307	0	1				34142	3336	21640	21758	32868	32868					0.06414399868754117
TSALSLSKL	9	Unmodified	_TSALSLSKL_					0	0	0			REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF	REV__ENST00000487188.1_1_1:12371595-12395946:+|nuORF	MSMS	HCT116MG_D190212_S1	1	460.2749938964844	2	460.276575	918.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.181	1	40.181	39.681	40.681	0								0	0	0	0.76902	1	15095	15095		4.3292	0	1		+		34143	10611	21641	21759	32869	32869					0.07606938211711167
TSALSPVICGP	11	Unmodified	_TSALSPVICGP_					0	0	0		NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant;ENSG00000134250|ENST00000256646|NOTCH2	NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant	NOTCH2|p.I2304Hfs*9|1|0.38|ENSG00000134250|chr1:119915812-119915813|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	522.771728515625	2	522.773342	1043.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.547	1	27.205	26.705	27.705	-0.34201								0	0	0	0.85804	1	10011	10011		25.399	2.663	1				34144	3271	21642	21760	32870	32870					0.012106769886713664
TSALSSPH	8	Unmodified	_TSALSSPH_					0	0	0			REV__ENST00000357461.6_1_14:67939156-67939645:-|nuORF	REV__ENST00000357461.6_1_14:67939156-67939645:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	799.3955688476562	1	799.394458	798.387182	0.9243	0.00073888	0.039393	3.1491E-05	0.96369	0.00077037	799.3944177914723	22.085	0.31167	21.858	21.624	21.936	-0.22777					7	5	2	0	0	0	0.53394	1	7669	7669		38.151	0	1	2238800	+		34145	15054	21643	21761	32871	32871					-0.02007623096142197
TSALSSPH	8	Unmodified	_TSALSSPH_					0	0	0			REV__ENST00000357461.6_1_14:67939156-67939645:-|nuORF	REV__ENST00000357461.6_1_14:67939156-67939645:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	799.394458	798.387182	0.77529	0.00061976	0.066206	5.2925E-05	0.8415	0.00067269	799.3946078186426	21.859	0.26057	21.86	21.729	21.99	0.00074577	0.00091562	1.5361E-05	NaN	38.151	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3363000	+		34146	15054	21643	21761							-0.02007623096142197
TSALSSPH	8	Unmodified	_TSALSSPH_					0	0	0			REV__ENST00000357461.6_1_14:67939156-67939645:-|nuORF	REV__ENST00000357461.6_1_14:67939156-67939645:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	799.394458	798.387182	0.9243	0.00073888	0.039393	3.1491E-05	0.96369	0.00077037	799.3944177914723	22.085	0.31167	21.858	21.624	21.936	-0.22777	-0.00091562	-6.073E-06	NaN	38.151	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2238800	+		34147	15054	21643	21761							-0.02007623096142197
TSALWRHLRS	10	Unmodified	_TSALWRHLRS_					0	0	0		ENSG00000132846|ENST00000255198|ZBED3	ENSG00000132846|ENST00000255198|ZBED3	ENSG00000132846|ENST00000255198|ZBED3	MSMS	HCT116MG_D190212_S3	3	613.8413696289062	2	613.841271	1225.66799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.046	1	17.13	16.63	17.63	0.084467								0	0	0	0.94107	1	5700	5700		6.7232	0.51738	1				34148	3216	21644	21762	32872	32872					0.06418132614339811
TSAMASPY	8	Unmodified	_TSAMASPY_					0	0	0			REV__ENST00000268695.9_1_16:88907439-88909137:-|nuORF	REV__ENST00000268695.9_1_16:88907439-88909137:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	827.361328125	1	827.360381	826.353105	0.7935	0.00065651	1.5819	0.0013088	2.3754	0.0019653	827.361812245931	50.413	0.31327	50.097	49.914	50.228	-0.31525					7	5	2	0	0	0	0.71835	1	19037	19037		20.871	0	1	8051700	+		34149	14688	21645	21763	32873	32873					-0.06701787579402207
TSAMDCHNEL	10	Unmodified	_TSAMDCHNEL_					0	0	0			REV__nc|ENSG00000114904|P51957-3|NEK4	REV__nc|ENSG00000114904|P51957-3|NEK4	MSMS	HCT116MG_D190212_S3	3	560.7220458984375	2	560.723523	1119.43249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.989	1	32.704	32.204	33.204	-0.28511								0	0	0	0.90475	1	12111	12111		14.838	4.7643	1		+		34150	11522	21646	21764	32874	32874					-0.12244508687581401
TSANRNVYEV	10	Unmodified	_TSANRNVYEV_					0	0	0		ENST00000515622.1_1_5:126783361-126801299:+|nuORF;ENSG00000145794|ENST00000503335|MEGF10	ENST00000515622.1_1_5:126783361-126801299:+|nuORF	ENST00000515622.1_1_5:126783361-126801299:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	577.7850341796875	2	576.785827	1151.5571	0.4118	0.00023752	-0.26321	-0.00015182	0.14859	8.5706E-05	576.7858524927146	27.028	0.72753	26.716	26.171	26.899	-0.3114					21	13	3	0	0	0	0.86339	1	9580	9580		6.7232	0	1	34088000			34151	3923	21647	21765	32875	32875					-0.012615518843858808
TSANTEDDDDD	11	Unmodified	_TSANTEDDDDD_					0	0	0		ENSG00000170633|ENST00000361234|RNF34;nc|ENSG00000170633|Q969K3-2|RNF34	ENSG00000170633|ENST00000361234|RNF34	ENSG00000170633|ENST00000361234|RNF34	MSMS	HCT116MG_D190212_S4	4	599.2029418945312	2	599.204926	1196.3953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.817	1	21.598	21.098	22.098	-0.21832								0	0	0	0.95113	1	7554	7554		5.7319	2.1354	1				34152	5148	21648	21766	32876	32876					-0.19504230218649354
TSAPASQQTTA	11	Unmodified	_TSAPASQQTTA_					0	0	0			REV__nc|ENSG00000119318|P54727-2|RAD23B	REV__nc|ENSG00000119318|P54727-2|RAD23B	MSMS	HCT116MG_D190212_S4	4	531.755859375	2	531.756735	1061.49892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.182	1	20.972	20.472	21.472	-0.20959								0	0	0	0.83401	1	7297	7297		28.495	3.5035	1		+		34153	11654	21649	21767	32877	32877					-0.02937233529655714
TSAPASSRTRY	11	Unmodified	_TSAPASSRTRY_					0	0	0			REV__ENST00000452761.1_1_2:110745136-110745940:-|nuORF	REV__ENST00000452761.1_1_2:110745136-110745940:-|nuORF	MSMS	HCT116MG_D190212_S3	3	598.9887084960938	2	598.804551	1195.59455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.936	1	22.917	22.417	23.417	-0.018869								0	0	0	0.93717	1	8073	8073		13.042	0.80181	1		+		34154	15723	21650	21768	32878	32878					0.004575393812501716
TSAPLARADLR	11	Unmodified	_TSAPLARADLR_					0	0	0			REV__ENST00000343916.7_1_20:61472127-61472319:+|nuORF	REV__ENST00000343916.7_1_20:61472127-61472319:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	585.7830810546875	2	585.833111	1169.65167	0.42386	0.00024831	-0.043376	-2.5411E-05	0.38048	0.0002229	585.8330192857184	21.475	0.63253	21.493	21.167	21.799	0.018446					21	11	3	0	0	0	0.7259	1	7420	7420		12.241	0.74595	1	4271100	+		34155	14997	21651	21769	32879	32879					0.07363006657601545
TSAPLSVSLLT	11	Unmodified	_TSAPLSVSLLT_					0	0	0		PARM1|p.P32L|1|0.23|ENSG00000169116|chr4:75012476-75012476|C/T|missense_variant	PARM1|p.P32L|1|0.23|ENSG00000169116|chr4:75012476-75012476|C/T|missense_variant	PARM1|p.P32L|1|0.23|ENSG00000169116|chr4:75012476-75012476|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	544.8114624023438	2	544.813522	1087.61249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.399	1	38.018	37.518	38.518	-0.38182								0	0	0	0.9387	1	14072	14072		12.241	3.4953	1				34156	9726	21652	21770	32880	32880					0.07218861583373837
TSAPRITAAA	10	Unmodified	_TSAPRITAAA_					0	0	0		BMP1|p.N614Tfs*138|1|0.42|ENSG00000168487|chr8:22196747-22196747|C/-|frameshift_variant	BMP1|p.N614Tfs*138|1|0.42|ENSG00000168487|chr8:22196747-22196747|C/-|frameshift_variant	BMP1|p.N614Tfs*138|1|0.42|ENSG00000168487|chr8:22196747-22196747|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	479.7693786621094	2	479.769448	957.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.759	1	19.759	19.259	20.259	0								0	0	0	0.84761	1	6870	6870		22.658	0.91144	1				34157	269	21653	21771	32881	32881					0.043882857834205424
TSAPSGPA	8	Unmodified	_TSAPSGPA_					0	0	0			REV__ENSG00000130997|ENST00000511885|POLN	REV__ENSG00000130997|ENST00000511885|POLN	MULTI-MSMS	HCT116MG_D190212_S4	4	687.3314208984375	1	687.330795	686.323519	0.64238	0.00044153	-0.026075	-1.7922E-05	0.61631	0.00042361	687.3306672655652	26.599	1.1443	26.298	25.401	26.545	-0.30087					27	21	2	0	0	0	0.6854	1	9403	9403		24.674	0	1	5258200	+		34158	11950	21654	21772	32882	32882					-0.03218983533224673
TSAPTPKTHDI	11	Unmodified	_TSAPTPKTHDI_					0	0	0			REV__nc|ENSG00000293552|Q9H3R0-3|KDM4C	REV__nc|ENSG00000293552|Q9H3R0-3|KDM4C	MSMS	HCT116MG_D190212_S3	3	584.3038940429688	2	584.303852	1166.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.554	1	17.636	17.136	18.136	0.081358								0	0	0	0.92235	1	5905	5905		17.113	0	1		+		34159	11315	21655	21773	32883	32883					0.016519052924877542
TSAPTSTSSAP	11	Unmodified	_TSAPTSTSSAP_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.R4729Efs*5|1|0.24|ENSG00000215182|chr11:1192325-1192325|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	HCT116MG_D190212_S3	3	503.7456970214844	2	503.738011	1005.46147	0.45891	0.00023117	-0.090668	-4.5673E-05	0.36824	0.0001855	503.7379120431527	24.971	0.52111	24.865	24.683	25.204	-0.10618					15	9	2	0	0	0	0.7259	1	8827	8827		12.241	0	1	20193000			34160	6447	21656	21774	32884	32884					-0.041043247952757156
TSAPYTQPLTV	11	Unmodified	_TSAPYTQPLTV_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	MSMS	HCT116MG_D190212_S3	3	589.2811279296875	2	589.308603	1176.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.174	1	20.222	19.722	20.722	0.048107								0	0	0	0.94012	1	6962	6962		11.495	0	1		+		34161	11928	21657	21775	32885	32885					0.021416735779894225
TSAQGGTYR	9	Unmodified	_TSAQGGTYR_					0	0	0		LILRB5|p.T446Rfs*16|1|0.4|ENSG00000105609|chr19:54254040-54254040|G/-|frameshift_variant;nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5	LILRB5|p.T446Rfs*16|1|0.4|ENSG00000105609|chr19:54254040-54254040|G/-|frameshift_variant	LILRB5|p.T446Rfs*16|1|0.4|ENSG00000105609|chr19:54254040-54254040|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	470.7276611328125	2	470.727781	939.441008	0.065873	3.1008E-05	0.63322	0.00029808	0.6991	0.00032908	470.7278980940254	16.798	0.72838	16.883	16.652	17.381	0.084467					22	13	3	0	0	0	0.24895	1	5589	5589		36.127	2.0246	1	7402100			34162	2014	21658	21776	32886	32886					-0.031134506644320936
TSAQGGTYR	9	Unmodified	_TSAQGGTYR_					0	0	0		LILRB5|p.T446Rfs*16|1|0.4|ENSG00000105609|chr19:54254040-54254040|G/-|frameshift_variant;nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5	LILRB5|p.T446Rfs*16|1|0.4|ENSG00000105609|chr19:54254040-54254040|G/-|frameshift_variant	LILRB5|p.T446Rfs*16|1|0.4|ENSG00000105609|chr19:54254040-54254040|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	470.7276611328125	2	470.727781	939.441008	-0.27718	-0.00013048	0.33184	0.0001562	0.054654	2.5727E-05	470.7279607210527	16.949	0.88065	16.783	16.556	17.436	-0.16664					24	16	3	0	0	0	0.1754	1	5571	5571		43.858	3.9086	1	3650700			34163	2014	21658	21776	32887	32887					-0.031134506644320936
TSAQPYVDHQ	10	Unmodified	_TSAQPYVDHQ_					0	0	0			REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	574.0878295898438	2	573.264727	1144.5149	0.51678	0.00029625	-0.0014633	-8.3885E-07	0.51532	0.00029541	573.2647448047901	30.293	0.76335	30.043	29.383	30.147	-0.24946					22	15	2	0	0	0	0.6277	1	11013	11013		26.268	3.5319	1	11086000	+		34164	16546	21659	21777	32888	32888					-0.051575272927721016
TSAQPYVDHQ	10	Unmodified	_TSAQPYVDHQ_					0	0	0			REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	572.8016967773438	2	573.264727	1144.5149	0.51678	0.00029625	-0.0014633	-8.3885E-07	0.51532	0.00029541	573.2647448047901	30.293	0.76335	30.043	29.383	30.147	-0.24946					22	15	2	0	0	0	0.27616	1	10861	10861		31.268	22.523	1	11086000	+		34165	16546	21659	21777	32889	32889					-0.051575272927721016
TSAQPYVDHQ	10	Unmodified	_TSAQPYVDHQ_					0	0	0			REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	573.2650146484375	2	573.264727	1144.5149	0.48721	0.0002793	0.081507	4.6725E-05	0.56872	0.00032602	573.2647372242205	30.277	0.63987	29.92	29.389	30.029	-0.3571					22	12	2	0	0	0	0.72678	1	10879	10879		18.146	8.0724	1	9142500	+		34166	16546	21659	21777	32890	32890					-0.051575272927721016
TSAQPYVDHQ	10	Unmodified	_TSAQPYVDHQ_					0	0	0			REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	MSMS	HCT116MG_D190212_S4	4	572.7907104492188	2	573.264727	1144.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.295	1	30.925	30.425	31.425	-0.37026								0	0	0	0.91638	1	11352	11352		12.241	1.4411	1		+		34167	16546	21659	21777	32891	32891					-0.051575272927721016
TSAQPYVDHQ	10	Unmodified	_TSAQPYVDHQ_					0	0	0			REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	573.264727	1144.5149	0.47993	0.00027513	-0.17737	-0.00010168	0.30256	0.00017345	573.2648006128011	30.434	0.045561	30.077	30.061	30.106	-0.3571	0.01694	-0.00016996	NaN	26.268	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8521600	+		34168	16546	21659	21777							-0.051575272927721016
TSAQQTGPTKP	11	Unmodified	_TSAQQTGPTKP_					0	0	0		PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant;PCLO|p.Y3007Lfs*2|1|0.28|ENSG00000186472|chr7:82951935-82951936|-/A|frameshift_variant;PCLO|p.M3036Tfs*24|1|0.06|ENSG00000186472|chr7:82951481-82951482|-/G|frameshift_variant;PCLO|p.Q3062Tfs*25|1|0.2|ENSG00000186472|chr7:82951405-82951406|-/G|frameshift_variant;PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant;PCLO|p.T3933Nfs*47|1|0.06|ENSG00000186472|chr7:82916188-82916189|-/T|frameshift_variant;PCLO|p.N4248Kfs*31|1|0.28|ENSG00000186472|chr7:82915242-82915243|-/T|frameshift_variant;PCLO|p.K4306Gfs*8|1|0.04|ENSG00000186472|chr7:82915067-82915070|TTTT/-|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.T5069Qfs*20|1|0.11|ENSG00000186472|chr7:82760722-82760722|T/-|frameshift_variant;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.P2408Lfs*36|1|0.44|ENSG00000186472|chr7:82953730-82953730|G/-|frameshift_variant;PCLO|p.P1234Afs*11|1|0.31|ENSG00000186472|chr7:82966089-82966090|-/T|frameshift_variant;PCLO|p.V1883Ffs*29|1|0.09|ENSG00000186472|chr7:82955307-82955307|T/-|frameshift_variant;PCLO|p.S1913Vfs*9|1|0.32|ENSG00000186472|chr7:82955216-82955216|T/-|frameshift_variant;PCLO|p.E1944Sfs*8|1|0.34|ENSG00000186472|chr7:82955124-82955124|T/-|frameshift_variant	PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant	PCLO|p.K2442Sfs*2|4|0.29|ENSG00000186472|chr7:82953628-82953628|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	558.2881469726562	2	558.288202	1114.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.125	1	20.916	20.416	21.416	-0.20959								0	0	0	0.9387	1	7274	7274		12.241	1.4167	1				34169	5887	21660	21778	32892	32892					0.00915332258387025
TSAQRQFRSKS	11	Unmodified	_TSAQRQFRSKS_					0	0	0			REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	REV__FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	648.3442993164062	2	648.344375	1294.6742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.487	1	38.105	37.605	38.605	-0.38163								0	0	0	0.95636	1	14107	14107		2.9952	0	1		+		34170	13968	21661	21779	32893	32893					0.03864606055230979
TSARRQQP	8	Unmodified	_TSARRQQP_					0	0	0			REV__ENST00000286733.8_1_4:76861990-76862140:-|nuORF	REV__ENST00000286733.8_1_4:76861990-76862140:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	472.2571105957031	2	472.25704	942.499526	0.25552	0.00012067	-0.028485	-1.3452E-05	0.22703	0.00010722	472.256998071823	17.298	0.20908	16.948	16.821	17.03	-0.34933					8	3	3	0	0	0	0.69862	1	5908	5908		23.148	1.6114	1	6220700	+		34171	14730	21662	21780	32894	32894					0.025976507007158034
TSAVCVWHFSL	11	Unmodified	_TSAVCVWHFSL_					0	0	0			REV__PKD1|p.A2299V|1|0.14|ENSG00000008710|chr16:2108271-2108271|G/A|missense_variant	REV__PKD1|p.A2299V|1|0.14|ENSG00000008710|chr16:2108271-2108271|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	625.3056030273438	2	625.305341	1248.59613	-0.26175	-0.00016367	0.22465	0.00014047	-0.037103	-2.3201E-05	625.3054443594707	16.467	1.2032	16.302	15.77	16.973	-0.165					49	23	3	0	0	0	0.74191	1	5512	5512		2.9952	2.9952	1	3095500	+		34172	17424	21663	21781	32895	32895					-0.018225428543701128
TSAVIHSENF	10	Unmodified	_TSAVIHSENF_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	HCT116MG_D190212_S3	3	552.24169921875	2	552.769645	1103.52474	0.29948	0.00016554	0.27668	0.00015294	0.57616	0.00031848	552.7697039006449	16.688	0.31211	16.773	16.548	16.86	0.084639					6	5	2	0	0	0	0.30788	1	5569	5569		8.7454	4.801	1	788940			34173	3337	21664	21782	32896	32896					-0.022883392873836783
TSAVNEHERE	10	Unmodified	_TSAVNEHERE_					0	0	0			REV__CTSH|p.N292Kfs*119|1|0.36|ENSG00000103811|chr15:78923049-78923050|-/T|frameshift_variant	REV__CTSH|p.N292Kfs*119|1|0.36|ENSG00000103811|chr15:78923049-78923050|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	586.2724609375	2	586.270541	1170.52653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.607	1	31.236	30.736	31.736	-0.37026								0	0	0	0.90475	1	11478	11478		14.838	0	1		+		34174	10305	21665	21783	32897	32897					-0.05191330269417449
TSAWGEPN	8	Unmodified	_TSAWGEPN_					0	0	0		TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant;TNRC6B|p.G1342Wfs*56|1|0.32|ENSG00000100354|chr22:40301234-40301235|-/T|frameshift_variant;TNRC6B|p.A1354Tfs*46|1|0.47|ENSG00000100354|chr22:40301265-40301266|-/ACCCAAC|frameshift_variant;ENSG00000100354|ENST00000454349|TNRC6B;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	TNRC6B|p.E999Rfs*48|1|0.29|ENSG00000100354|chr22:40273449-40273449|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	431.1903381347656	2	431.1905	860.366446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.005	1	22.62	22.12	23.12	-0.3852								0	0	0	0.8837	1	8178	8178		5.2307	0	1				34175	1696	21666	21784	32898	32898					-0.06932213475806748
TSAWYGVSLSE	11	Unmodified	_TSAWYGVSLSE_					0	0	0		ENST00000580469.1_1_22:18297284-18297455:-|nuORF	ENST00000580469.1_1_22:18297284-18297455:-|nuORF	ENST00000580469.1_1_22:18297284-18297455:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	602.1026000976562	2	600.282586	1198.55062	0.43745	0.0002626	-0.44061	-0.00026449	-0.0031567	-1.8949E-06	600.2819771622536	38.682	0.41668	38.38	38.196	38.613	-0.30137					18	7	4	0	0	0	0.73536	1	14293	14293		8.7454	3.0136	1	32399000			34176	8952	21667	21785	32899	32899					-0.04071489835723696
TSAYAILDFVD	11	Unmodified	_TSAYAILDFVD_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MSMS	HCT116MG_D190212_S3	3	607.7982788085938	2	607.800611	1213.58667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.776	1	27.588	27.088	28.088	-0.18847								0	0	0	0.94012	1	10025	10025		11.495	1.4208	1		+		34177	12067	21668	21786	32900	32900					-0.011580326589182732
TSAYHYVQCPV	11	Unmodified	_TSAYHYVQCPV_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MSMS	HCT116MG_D190212_S4	4	634.29296875	2	634.29243	1266.57031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.311	1	29.954	29.454	30.454	-0.3571								0	0	0	0.95113	1	10983	10983		5.7319	0	1				34178	2669	21669	21787	32901	32901					-0.0523143709665419
TSCADTLRY	9	Carbamidomethyl (C)	_TSC(Carbamidomethyl (C))ADTLRY_	TSC(1)ADTLRY		TSC(83)ADTLRY		0	1	0		ENST00000588015.5_1_16:4721412-4726932:+|nuORF;nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	ENST00000588015.5_1_16:4721412-4726932:+|nuORF	ENST00000588015.5_1_16:4721412-4726932:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	543.7481079101562	2	543.747856	1085.48116	0.40534	0.0002204	-0.69569	-0.00037828	-0.29036	-0.00015788	543.7474450892778	30.822	0.36325	30.555	30.456	30.819	-0.26704					9	6	2	0	0	0	0.034046	1	11369	11369		82.529	30.9	1	15627000			34179	1853	21670	21788	32902	32902	6				-0.058162720561767856
TSCHQNCSR	9	Unmodified	_TSCHQNCSR_					0	0	0		nc|ENSG00000204624|Q9P2K9-2|DISP3;ENSG00000204624|ENST00000294484|DISP3	nc|ENSG00000204624|Q9P2K9-2|DISP3	nc|ENSG00000204624|Q9P2K9-2|DISP3	MSMS	HCT116MG_D190212_S2	2	518.2084350585938	2	518.208375	1034.4022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.197	1	10.915	10.415	11.415	-0.28186								0	0	0	0.76973	1	3594	3594		1.8442	1.0506	1				34180	6344	21671	21789	32903	32903					-0.11362822562114161
TSCLAGAPCE	10	Unmodified	_TSCLAGAPCE_					0	0	0			REV__ENSG00000110203|ENST00000611028|FOLR3	REV__ENSG00000110203|ENST00000611028|FOLR3	MSMS	HCT116MG_D190212_S4	4	476.1986999511719	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.347	1	25.068	24.568	25.568	-0.27958								0	0	0	0.90892	1	8978	8978		13.906	3.0821	1		+		34181	11396	21672	21790	32904	32904					-0.09342377256677992
TSCLLFAPLA	10	Unmodified	_TSCLLFAPLA_					0	0	0			REV__ENSG00000148344|ENST00000340607|PTGES	REV__ENSG00000148344|ENST00000340607|PTGES	MSMS	HCT116MG_D190212_S4	4	518.2801513671875	2	518.280803	1034.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.522	1	32.143	31.643	32.643	-0.37924								0	0	0	0.94107	1	11848	11848		6.7232	0	1		+		34182	12540	21673	21791	32905	32905					0.03116168856695367
TSCMECGP	8	Unmodified	_TSCMECGP_					0	0	0			REV__ENSG00000179526|ENST00000398712|SHARPIN	REV__ENSG00000179526|ENST00000398712|SHARPIN	MSMS	HCT116MG_D190212_S1	1	414.13946533203125	2	414.140249	826.265946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.679	1	32.679	32.179	33.179	0								0	0	0	0.8837	1	12067	12067		0.79363	0	1		+		34183	13640	21674	21792	32906	32906					-0.1541365311697973
TSCSHAQEEGP	11	Unmodified	_TSCSHAQEEGP_					0	0	0			REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	REV__ENST00000496281.1_1_20:62321467-62323226:+|nuORF	MSMS	HCT116MG_D190212_S4	4	573.2307739257812	2	573.230027	1144.4455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.08	1	20.871	20.371	21.371	-0.20959								0	0	0	0.94416	1	7256	7256		9.3831	0	1		+		34184	14406	21675	21793	32907	32907					-0.12094354303826549
TSDASSPRSY	10	Unmodified	_TSDASSPRSY_					0	0	0		ENST00000345541.6_1_10:28900683-28903615:+|nuORF;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	MSMS	HCT116MG_D190212_S1	1	535.7411499023438	2	535.741085	1069.46762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.99	1	18.99	18.49	19.49	0								0	0	0	0.46397	1	6560	6560		49.527	0	1				34185	1614	21676	21794	32908	32908					-0.06433806563745748
TSDASSPRSY	10	Unmodified	_TSDASSPRSY_					0	0	0		ENST00000345541.6_1_10:28900683-28903615:+|nuORF;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	535.7412719726562	2	535.741085	1069.46762	0.46194	0.00024748	0.72462	0.00038821	1.1866	0.00063569	535.7410335093135	19.44	0.416	19.07	18.836	19.252	-0.3695					12	7	2	0	0	0	0.055088	1	6751	6751		83.429	9.2291	1	6905400			34186	1614	21676	21794	32909	32909					-0.06433806563745748
TSDDIMNYTTV	11	Unmodified	_TSDDIMNYTTV_					0	0	0			REV__GYS2|p.H446Y|1|0.09|ENSG00000111713|chr12:21558286-21558286|G/A|missense_variant	REV__GYS2|p.H446Y|1|0.09|ENSG00000111713|chr12:21558286-21558286|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	630.2791137695312	2	630.276643	1258.53873	0.49014	0.00030893	-1.6844	-0.0010617	-1.1943	-0.00075274	630.2767673087973	19.286	0.36469	18.917	18.732	19.096	-0.3695					14	6	3	0	0	0	0.46155	1	6684	6684		49.554	11.379	1	10758000	+		34187	16866	21677	21795	32910	32910					-0.08019474641264424
TSDDIMNYTTV	11	Unmodified	_TSDDIMNYTTV_					0	0	0			REV__GYS2|p.H446Y|1|0.09|ENSG00000111713|chr12:21558286-21558286|G/A|missense_variant	REV__GYS2|p.H446Y|1|0.09|ENSG00000111713|chr12:21558286-21558286|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	630.276643	1258.53873	0.49014	0.00030893	-1.6844	-0.0010617	-1.1943	-0.00075274	630.2767673087973	19.286	0.36469	18.917	18.732	19.096	-0.3695	0.071896	0.0048137	NaN	49.554	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10758000	+		34188	16866	21677	21795							-0.08019474641264424
TSDDIMNYTTV	11	Unmodified	_TSDDIMNYTTV_					0	0	0			REV__GYS2|p.H446Y|1|0.09|ENSG00000111713|chr12:21558286-21558286|G/A|missense_variant	REV__GYS2|p.H446Y|1|0.09|ENSG00000111713|chr12:21558286-21558286|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	630.276643	1258.53873	0.44852	0.00028269	-5.6089	-0.0035351	-5.1603	-0.0032524	630.7747706735445	18.704	0.26021	18.773	18.615	18.875	0.069159	-0.071896	-0.0001332	NaN	49.554	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1378100	+		34189	16866	21677	21795							-0.08019474641264424
TSDDKAPV	8	Unmodified	_TSDDKAPV_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MULTI-SECPEP	HCT116MG_D190212_S2	2	831.734130859375	1	832.404689	831.397412	0.75583	0.00062916	-0.59639	-0.00049644	0.15945	0.00013272	832.4041547184873	23.585	0.57094	23.202	22.832	23.403	-0.38324					13	10	2	0	0	0	0.23035	1	8355	8355		39.95	3.8227	1	7077500			34190	4118	21678	21796	32911	32911					-0.02503060161564008
TSDDPWLT	8	Unmodified	_TSDDPWLT_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000521968.1_1_9:26919278-26919473:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	HCT116MG_D190212_S2	2	934.415771484375	1	934.415253	933.407977	0.70389	0.00065772	-0.12664	-0.00011833	0.57725	0.00053939	934.4149303190885	46.328	0.41214	46.217	46.008	46.42	-0.11121					13	7	3	0	0	0	0.070772	1	17635	17635		101.72	41.332	1	24170000			34191	3458	21679	21797	32912	32912					-0.06139077507134516
TSDDPWLTAY	10	Unmodified	_TSDDPWLTAY_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000521968.1_1_9:26919278-26919473:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	HCT116MG_D190212_S1	1	1168.513671875	1	1168.5157	1167.50842	0.73128	0.00085452	-0.8274	-0.00096683	-0.096112	-0.00011231	1168.5140998243764	53.539	0.20553	53.539	53.411	53.616	0					6	3	2	0	0	0	0.036884	1	20520	20520		128.37	93.964	1	15789000			34192	3458	21680	21798	32913	32913					-0.06863465244146028
TSDDPWLTAY	10	Unmodified	_TSDDPWLTAY_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000521968.1_1_9:26919278-26919473:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	HCT116MG_D190212_S2	2	1168.5162353515625	1	1168.5157	1167.50842	0.39826	0.00046538	-0.0039491	-4.6146E-06	0.39431	0.00046076	1168.5153279666035	53.851	0.41244	53.661	53.48	53.893	-0.1894					17	7	3	0	0	0	0.049927	1	20721	20721		115.69	83.575	1	65901000			34193	3458	21680	21798	32914	32914					-0.06863465244146028
TSDDPWLTAY	10	Unmodified	_TSDDPWLTAY_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000521968.1_1_9:26919278-26919473:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	HCT116MG_D190212_S2	2	584.761962890625	2	584.761486	1167.50842	0.44325	0.0002592	0.028428	1.6624E-05	0.47168	0.00027582	584.7613390651574	53.879	0.30925	53.69	53.532	53.842	-0.1894					9	5	2	0	0	0	0.65915	1	20779	20779		34.402	34.402	1	11003000			34194	3458	21680	21798	32915	32915					-0.06863465244146028
TSDDPWLTAY	10	Unmodified	_TSDDPWLTAY_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000521968.1_1_9:26919278-26919473:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	HCT116MG_D190212_S3	3	1168.515869140625	1	1168.5157	1167.50842	0.47838	0.00055899	-0.01777	-2.0765E-05	0.46061	0.00053823	1168.5155879447918	53.99	0.36416	53.69	53.509	53.873	-0.29946					16	6	3	0	0	0	0.049927	1	20448	20448		115.69	73.597	1	19084000			34195	3458	21680	21798	32916	32916					-0.06863465244146028
TSDDPWLTAY	10	Unmodified	_TSDDPWLTAY_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000521968.1_1_9:26919278-26919473:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	HCT116MG_D190212_S3	3	584.760986328125	2	584.761486	1167.50842	0.44563	0.00026059	-0.67529	-0.00039488	-0.22966	-0.00013429	584.7613580344473	54.018	0.46889	53.718	53.404	53.873	-0.29946					10	8	2	0	0	0	0.049927	1	20465	20465		103.75	61.909	1	3314900			34196	3458	21680	21798	32917	32917					-0.06863465244146028
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	599.28564453125	2	599.285325	1196.5561	0.56407	0.00033804	-0.079908	-4.7888E-05	0.48416	0.00029015	599.2852343369085	29.659	0.62391	29.659	29.425	30.049	0					35	11	5	0	0	0	0.00022982	1	10828	10828		192.32	116.56	1	384090000			34197	2255	21681	21799	32918	32918					-0.03431811043947164
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1197.56298828125	1	1197.56337	1196.5561	0.6826	0.00081746	0.15019	0.00017986	0.83279	0.00099732	1197.5619122467324	29.644	0.31231	29.644	29.425	29.737	0					9	5	3	0	0	0	0.013156	1	10854	10854		136.39	84.762	1	12300000			34198	2255	21681	21799	32919	32919					-0.03431811043947164
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	599.2855834960938	2	599.285325	1196.5561	0.46107	0.00027631	-0.033605	-2.0139E-05	0.42746	0.00025617	599.2852807986679	29.977	0.56781	29.693	29.46	30.028	-0.28453					35	10	5	0	0	0	0.00022982	1	10982	10982		192.32	106.68	1	1058099999.9999999			34199	2255	21681	21799	32920	32920					-0.03431811043947164
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1197.564453125	1	1197.56337	1196.5561	0.29551	0.0003539	-0.15209	-0.00018214	0.14342	0.00017176	1197.5631533156914	29.977	0.36114	29.693	29.564	29.925	-0.28453					12	6	3	0	0	0	0.00081196	1	11007	11007		179.28	121.56	1	80795000			34200	2255	21681	21799	32921	32921					-0.03431811043947164
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	ENST00000534329.1_1_11:17098694-17099257:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	599.28564453125	2	599.285325	1196.5561	0.68317	0.00040941	-0.038979	-2.3359E-05	0.64419	0.00038606	599.2852444281035	30.085	0.41975	29.835	29.65	30.069	-0.24946					17	7	4	0	0	0	1.1597E-10	1	10952	10952		220.1	134.46	1	51403000			34201	2255	21681	21799	32922	32922					-0.03431811043947164
TSDEAAKHSPT	11	Unmodified	_TSDEAAKHSPT_					0	0	0			REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-MSMS	HCT116MG_D190212_S2	2	572.0799560546875	2	572.267467	1142.52038	0.30603	0.00017513	0.45892	0.00026263	0.76495	0.00043776	572.2675604001561	16.107	0.78274	15.773	15.533	16.315	-0.33451					34	14	3	0	0	0	0.73156	1	5306	5306		10.151	1.4052	1	7993700	+		34202	14231	21682	21800	32923	32923					-0.045178485009500946
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	HCT116MG_D190212_S1	1	1059.4642333984375	1	1059.46293	1058.45566	0.78437	0.00083101	0.34474	0.00036524	1.1291	0.0011962	1059.4630050236394	47.191	0.25897	47.191	47.01	47.269	0					8	4	3	0	0	0	0.012168	1	17929	17929		108	65.902	1	39745000			34203	4109	21683	21801	32924	32924					-0.07123423306939003
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	HCT116MG_D190212_S1	1	530.2354736328125	2	530.235104	1058.45566	0.33294	0.00017654	0.062365	3.3068E-05	0.3953	0.0002096	530.2350717686595	47.206	0.25897	47.206	47.01	47.269	0					7	4	2	0	0	0	0.012168	1	17931	17931		108	81.113	1	19635000			34204	4109	21683	21801	32925	32925					-0.07123423306939003
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	HCT116MG_D190212_S2	2	1059.4635009765625	1	1059.46293	1058.45566	0.72148	0.00076438	0.016693	1.7685E-05	0.73817	0.00078206	1059.4628397580732	47.329	0.46523	47.207	47.026	47.491	-0.12175					15	8	3	0	0	0	0.0054498	1	18042	18042		133.7	82.847	1	84870000			34205	4109	21683	21801	32926	32926					-0.07123423306939003
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2350463867188	2	530.235104	1058.45566	0.56753	0.00030093	0.13623	7.2233E-05	0.70376	0.00037316	530.2351635983949	47.323	0.46523	47.201	47.026	47.491	-0.12175					16	8	3	0	0	0	0.0090481	1	18053	18053		115.69	82.906	1	38686000			34206	4109	21683	21801	32927	32927					-0.07123423306939003
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	HCT116MG_D190212_S3	3	1059.4647216796875	1	1059.46293	1058.45566	0.47202	0.00050009	0.43767	0.0004637	0.9097	0.00096379	1059.4635092409685	47.508	0.40201	47.192	47.009	47.411	-0.31525					14	8	2	0	0	0	0.012168	1	17827	17827		108	61.976	1	24502000			34207	4109	21683	21801	32928	32928					-0.07123423306939003
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2354736328125	2	530.235104	1058.45566	0.29732	0.00015765	0.42719	0.00022651	0.72451	0.00038416	530.2352295553773	47.51	0.50737	47.195	47.06	47.567	-0.31524					19	10	3	0	0	0	0.01389	1	17831	17831		103.75	67.242	1	24736000			34208	4109	21683	21801	32929	32929					-0.07123423306939003
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	HCT116MG_D190212_S4	4	530.2354125976562	2	530.235104	1058.45566	0.55997	0.00029691	0.23626	0.00012527	0.79622	0.00042219	530.7368467316469	47.542	0.15462	47.173	47.102	47.256	-0.36907					13	10	2	0	0	0	0.020181	2	17586	17577;17586		96.285	63.499	1	8245800			34209	4109	21683	21801	32930;32931	32931					-0.07123423306939003
TSDFSDWSSF	10	Unmodified	_TSDFSDWSSF_					0	0	0		ENSG00000162300|ENST00000294258|ZFPL1	ENSG00000162300|ENST00000294258|ZFPL1	ENSG00000162300|ENST00000294258|ZFPL1	MULTI-SECPEP	HCT116MG_D190212_S2	2	590.3223266601562	2	589.735468	1177.45638	0.59571	0.00035131	0.4378	0.00025819	1.0335	0.0006095	589.7355729801961	28.023	0.20717	27.693	27.615	27.822	-0.32987					5	3	2	0	0	0	0.31081	1	10247	10247		5.2969	1.3525	1	11171000			34210	4512	21684	21802	32932	32932					-0.12524628657911308
TSDFSDWSSF	10	Unmodified	_TSDFSDWSSF_					0	0	0		ENSG00000162300|ENST00000294258|ZFPL1	ENSG00000162300|ENST00000294258|ZFPL1	ENSG00000162300|ENST00000294258|ZFPL1	MULTI-SECPEP	HCT116MG_D190212_S3	3	590.3225708007812	2	589.735468	1177.45638	0.53036	0.00031277	-0.21876	-0.00012901	0.3116	0.00018376	589.7351332233002	27.991	0.20814	27.803	27.673	27.881	-0.18847					5	3	2	0	0	0	0.2916	1	10114	10114		22.736	8.3309	1	2010300			34211	4512	21684	21802	32933	32933					-0.12524628657911308
TSDFSRFTNY	10	Unmodified	_TSDFSRFTNY_					0	0	0		nc|ENSG00000175305|O96020-2|CCNE2;ENSG00000175305|ENST00000308108|CCNE2	nc|ENSG00000175305|O96020-2|CCNE2	nc|ENSG00000175305|O96020-2|CCNE2	MULTI-MSMS	HCT116MG_D190212_S1	1	619.2781982421875	2	619.277835	1236.54112	0.91313	0.00056548	-0.19937	-0.00012346	0.71377	0.00044202	619.2775939910687	41.472	0.20869	41.472	41.341	41.55	0					6	3	2	0	0	0	0.020414	1	15640	15640		147.24	103.47	1	13317000			34212	5371	21685	21803	32934	32934					-0.06769258121244093
TSDFSRFTNY	10	Unmodified	_TSDFSRFTNY_					0	0	0		nc|ENSG00000175305|O96020-2|CCNE2;ENSG00000175305|ENST00000308108|CCNE2	nc|ENSG00000175305|O96020-2|CCNE2	nc|ENSG00000175305|O96020-2|CCNE2	MSMS	HCT116MG_D190212_S2	2	619.2783813476562	2	619.277835	1236.54112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.467	1	41.399	40.899	41.899	-0.068199								0	0	0	1.118E-06	1	15669	15669		185.27	135.72	1				34213	5371	21685	21803	32935	32935					-0.06769258121244093
TSDFSRFTNY	10	Unmodified	_TSDFSRFTNY_					0	0	0		nc|ENSG00000175305|O96020-2|CCNE2;ENSG00000175305|ENST00000308108|CCNE2	nc|ENSG00000175305|O96020-2|CCNE2	nc|ENSG00000175305|O96020-2|CCNE2	MSMS	HCT116MG_D190212_S3	3	619.2788696289062	2	619.277835	1236.54112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.776	1	41.474	40.974	41.974	-0.30257								0	0	0	0.048245	1	15542	15542		128.58	82.558	1				34214	5371	21685	21803	32936	32936					-0.06769258121244093
TSDGRQTTY	9	Unmodified	_TSDGRQTTY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	HCT116MG_D190212_S1	1	514.73583984375	2	514.735803	1027.45705	0.50723	0.00026109	0.4263	0.00021943	0.93354	0.00048052	514.7357978470357	17.911	0.26065	17.911	17.724	17.985	0					9	4	3	0	0	0	0.27446	1	6153	6153		33.445	10.709	1	5461100			34215	6118	21686	21804	32937	32937					-0.05557789218187281
TSDGRQTTY	9	Unmodified	_TSDGRQTTY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MSMS	HCT116MG_D190212_S2	2	514.7359619140625	2	514.735803	1027.45705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.417	1	18.054	17.554	18.554	-0.36325								0	0	0	0.0047254	1	6328	6328		117.76	20.686	1				34216	6118	21686	21804	32938	32938					-0.05557789218187281
TSDHFETIMKY	11	Oxidation (M)	_TSDHFETIM(Oxidation (M))KY_		TSDHFETIM(1)KY		TSDHFETIM(140)KY	0	0	1		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S1	1	695.0477294921875	2	694.31356	1386.61257	0.88417	0.00061389	-0.30269	-0.00021016	0.58149	0.00040373	694.3131903619061	31.258	0.20828	31.258	31.128	31.336	0					6	3	2	0	0	0	0.0040483	2	11505	11505;11509		143.21	127.06	1	5710400			34217	3424	21687	21805	32939;32940	32939		80			-0.06527506478937539
TSDHFETIMKY	11	Oxidation (M)	_TSDHFETIM(Oxidation (M))KY_		TSDHFETIM(1)KY		TSDHFETIM(130)KY	0	0	1		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S2	2	694.8153686523438	2	694.31356	1386.61257	0.89288	0.00061994	-0.43341	-0.00030093	0.45946	0.00031901	694.3131549825791	31.473	0.36218	31.225	30.992	31.354	-0.24883					11	6	3	0	0	0	0.025528	1	11621	11621		128.58	113.33	1	40859000			34218	3424	21687	21805	32941	32941		80			-0.06527506478937539
TSDHFETIMKY	11	Oxidation (M)	_TSDHFETIM(Oxidation (M))KY_		TSDHFETIM(1)KY		TSDHFETIM(77)KY	0	0	1		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S3	3	694.312744140625	2	694.31356	1386.61257	0.80566	0.00055938	-1.1994	-0.00083273	-0.39369	-0.00027334	694.3124979269254	31.622	0.20852	31.352	31.221	31.43	-0.27028					9	3	3	0	0	0	0.18623	1	11588	11588		77.049	56.634	1	4964800			34219	3424	21687	21805	32942	32942		80			-0.06527506478937539
TSDHFETIMKY	11	Oxidation (M)	_TSDHFETIM(Oxidation (M))KY_		TSDHFETIM(1)KY		TSDHFETIM(44)KY	0	0	1		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S4	4	463.2187805175781	3	463.211465	1386.61257	-0.064009	-2.965E-05	-0.1784	-8.2637E-05	-0.24241	-0.00011229	463.2111934368617	31.752	0.25957	31.377	31.226	31.486	-0.37529					6	4	2	0	0	0	0.52095	1	11539	11539		44.207	33.891	1	2624400			34220	3424	21687	21805	32943	32943		80			-0.06527506478937539
TSDHFETIMKY	11	Oxidation (M)	_TSDHFETIM(Oxidation (M))KY_		TSDHFETIM(1)KY		TSDHFETIM(78)KY	0	0	1		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	HCT116MG_D190212_S4	4	694.3145141601562	2	694.31356	1386.61257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.826	1	31.451	30.951	31.951	-0.37529								0	0	0	0.13552	1	11567	11567		78.06	62.812	1				34221	3424	21687	21805	32944	32944		80			-0.06527506478937539
TSDHFETIMKY	11	Oxidation (M)	_TSDHFETIM(Oxidation (M))KY_					0	0	1		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	694.31356	1386.61257	0.63545	0.0004412	0.27646	0.00019195	0.91191	0.00063315	694.8151982114958	31.758	0.15576	31.382	31.278	31.434	-0.37529	0.078227	0.0009671	NaN	143.21	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3101200			34222	3424	21687	21805				80			-0.06527506478937539
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S1	1	686.3163452148438	2	686.316103	1370.61765	0.52933	0.00036329	-0.278	-0.0001908	0.25133	0.00017249	686.3156743270115	40.004	0.31147	40.004	39.813	40.124	0					11	5	3	0	0	0	1.1836E-05	1	15021	15021		173.14	144.64	1	45793000			34223	3424	21687	21806	32945	32945					-0.05283202616305971
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S1	1	458.2142333984375	3	457.879827	1370.61765	-0.10817	-4.953E-05	0.089131	4.0811E-05	-0.019041	-8.7184E-06	458.21425706668157	39.995	0.25972	39.995	39.813	40.073	0					11	4	3	0	0	0	0.025528	1	15044	15044		100.07	85.896	1	29478000			34224	3424	21687	21806	32946	32946					-0.05283202616305971
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S2	2	686.316650390625	2	686.316103	1370.61765	0.3365	0.00023094	0.36917	0.00025336	0.70566	0.00048431	686.3163082749214	39.992	0.36245	39.919	39.687	40.05	-0.072838					11	6	2	0	0	0	4.6468E-07	1	15056	15056		185.27	150.34	1	343970000			34225	3424	21687	21806	32947	32947					-0.05283202616305971
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S2	2	457.8797607421875	3	457.879827	1370.61765	0.01446	6.6209E-06	0.26021	0.00011914	0.27467	0.00012577	457.8798709404343	39.992	0.41507	39.919	39.739	40.154	-0.072838					20	7	4	0	0	0	4.6468E-07	1	15070	15070		157.54	136.3	1	163700000			34226	3424	21687	21806	32948	32948					-0.05283202616305971
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	HCT116MG_D190212_S3	3	686.3165283203125	2	686.316103	1370.61765	0.78716	0.00054024	-0.34332	-0.00023562	0.44384	0.00030462	686.3158461261467	40.241	0.26064	39.94	39.799	40.059	-0.30142					14	4	4	0	0	0	0.025005	1	14950	14950		128.87	109.51	1	30326000			34227	3424	21687	21806	32949	32949					-0.05283202616305971
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	HCT116MG_D190212_S4	4	457.8798522949219	3	457.879827	1370.61765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.464	1	40.086	39.586	40.586	-0.37828								0	0	0	0.95196	1	14846	14846		4.4062	0	1				34228	3424	21687	21806	32950	32950					-0.05283202616305971
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	686.316103	1370.61765	0.73609	0.00050519	-0.069296	-4.7559E-05	0.66679	0.00045763	686.818036631698	40.366	0.16837	39.987	39.865	40.034	-0.37828	0.024844	-0.00023262	NaN	185.27	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2889300			34229	3424	21687	21806							-0.05283202616305971
TSDHFETIMKY	11	Unmodified	_TSDHFETIMKY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	HCT116MG_D190212_S4	4		3	457.879827	1370.61765	0.2079	9.5191E-05	-0.56073	-0.00025675	-0.35284	-0.00016156	457.87969194969446	40.386	0.21664	40.008	39.865	40.082	-0.37828	0.033757	-0.0010066	NaN	157.54	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1811800			34230	3424	21687	21806							-0.05283202616305971
TSDKDGNTHAY	11	Unmodified	_TSDKDGNTHAY_					0	0	0		MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant;MTUS1|p.A567Qfs*4|1|0.2|ENSG00000129422|chr8:17754110-17754110|T/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1	MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant	MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	604.7626953125	2	604.762549	1207.51054	0.46878	0.0002835	-0.11797	-7.1347E-05	0.35081	0.00021216	604.7624682919401	15.978	0.20831	15.978	15.848	16.056	0					5	3	2	0	0	0	0.5254	1	5370	5370		51.765	38.15	1	5165900			34231	3034	21688	21807	32951	32951					-0.08491036506302407
TSDKDGNTHAY	11	Unmodified	_TSDKDGNTHAY_					0	0	0		MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant;MTUS1|p.A567Qfs*4|1|0.2|ENSG00000129422|chr8:17754110-17754110|T/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1	MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant	MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	604.7626953125	2	604.762549	1207.51054	0.64434	0.00038967	-0.2923	-0.00017677	0.35205	0.0002129	604.7623328527311	16.311	0.26127	15.969	15.839	16.1	-0.34183					9	4	3	0	0	0	0.0012703	1	5484	5484		180.74	138.9	1	7646600			34232	3034	21688	21807	32952	32952					-0.08491036506302407
TSDKPGSPY	9	Unmodified	_TSDKPGSPY_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	HCT116MG_D190212_S1	1	476.2244873046875	2	476.224539	950.434526	0.3022	0.00014391	-0.045047	-2.1452E-05	0.25715	0.00012246	476.22447083164604	20.446	0.31282	20.446	20.227	20.54	0					8	5	2	0	0	0	0.034046	1	7157	7157		82.529	23.85	1	4902600			34233	1201	21689	21808	32953	32953					-0.042673886158013374
TSDKPGSPY	9	Unmodified	_TSDKPGSPY_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MSMS	HCT116MG_D190212_S2	2	476.22454833984375	2	476.224539	950.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.927	1	20.544	20.044	21.044	-0.38288								0	0	0	0.003374	1	7338	7338		121.53	2.6393	1				34234	1201	21689	21808	32954	32954					-0.042673886158013374
TSDKPGSPY	9	Unmodified	_TSDKPGSPY_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MSMS	HCT116MG_D190212_S3	3	476.2245178222656	2	476.224539	950.434526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.273	1	20.321	19.821	20.821	0.048107								0	0	0	0.1947	1	7002	7002		47.749	1.7277	1				34235	1201	21689	21808	32955	32955					-0.042673886158013374
TSDLGKTEL	9	Unmodified	_TSDLGKTEL_					0	0	0		ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant;ZMYM1|p.L587*|1|0.29|ENSG00000197056|chr1:35113585-35113585|T/-|frameshift_variant;ZMYM1|p.R756Sfs*8|1|0.05|ENSG00000197056|chr1:35114097-35114098|-/TGGTGCTATCATA|frameshift_variant;ENSG00000197056|ENST00000359858|ZMYM1	ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant	ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	482.2530212402344	2	482.253297	962.492041	0.15512	7.4808E-05	-0.36361	-0.00017535	-0.20848	-0.00010054	482.25292532389005	31.687	0.15635	31.417	31.326	31.482	-0.27028					4	2	2	0	0	0	0.029121	1	11609	11609		87.258	9.1088	1	4036500			34236	6116	21690	21809	32956	32956					0.009294535897652167
TSDLGKTEL	9	Unmodified	_TSDLGKTEL_					0	0	0		ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant;ZMYM1|p.L587*|1|0.29|ENSG00000197056|chr1:35113585-35113585|T/-|frameshift_variant;ZMYM1|p.R756Sfs*8|1|0.05|ENSG00000197056|chr1:35114097-35114098|-/TGGTGCTATCATA|frameshift_variant;ENSG00000197056|ENST00000359858|ZMYM1	ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant	ZMYM1|p.T506Pfs*15|4|0.25|ENSG00000197056|chr1:35113340-35113340|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	482.253297	962.492041	0.41845	0.0002018	0.09886	4.7676E-05	0.51731	0.00024947	482.2532081706463	31.624	0.20761	31.375	31.198	31.406	-0.24883	-0.021126	0.0001358	NaN	87.258	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10600000			34237	6116	21690	21809							0.009294535897652167
TSDLQDKNEY	10	Unmodified	_TSDLQDKNEY_					0	0	0		ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	606.7730712890625	2	606.772582	1211.53061	0.4418	0.00026807	0.094322	5.7232E-05	0.53612	0.0003253	606.7725917919225	23.132	0.31267	23.132	23.001	23.314	0					12	5	3	0	0	0	1.5202E-53	1	8224	8224		318.87	204.22	1	44696000			34238	1310	21691	21810	32957	32957					-0.06669285566363214
TSDLQDKNEY	10	Unmodified	_TSDLQDKNEY_					0	0	0		ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	606.7736206054688	2	606.772582	1211.53061	0.61311	0.00037202	-0.028074	-1.7034E-05	0.58504	0.00035498	606.7725100868364	23.605	0.62373	23.221	23.039	23.663	-0.38324					23	11	4	0	0	0	2.9547999999999997E-43	1	8419	8419		301.86	198.5	1	156740000			34239	1310	21691	21810	32958	32958					-0.06669285566363214
TSDLQDKNEY	10	Unmodified	_TSDLQDKNEY_					0	0	0		ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	606.7728271484375	2	606.772582	1211.53061	0.47328	0.00028717	-0.015582	-9.455E-06	0.4577	0.00027772	606.7724672442127	23.199	0.31269	23.16	22.979	23.291	-0.03968					14	5	4	0	0	0	5.4739E-17	1	8181	8181		246.87	157.92	1	20748000			34240	1310	21691	21810	32959	32959					-0.06669285566363214
TSDLQDKNEY	10	Unmodified	_TSDLQDKNEY_					0	0	0		ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	606.7723388671875	2	606.772582	1211.53061	0.91072	0.0005526	-2.003	-0.0012154	-1.0923	-0.00066275	606.7717195047445	23.472	0.26056	23.224	23.011	23.272	-0.24775					6	4	2	0	0	0	0.20072	1	8237	8237		59.368	29.528	1	2433500			34241	1310	21691	21810	32960	32960					-0.06669285566363214
TSDLVMGLP	9	Oxidation (M)	_TSDLVM(Oxidation (M))GLP_		TSDLVM(1)GLP		TSDLVM(44)GLP	0	0	1		TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant;TAS1R3|p.L606Wfs*43|1|0.42|ENSG00000169962|chr1:1333711-1333711|G/-|frameshift_variant;ENSG00000169962|ENST00000339381|TAS1R3	TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant	TAS1R3|p.H387Sfs*13|1|0.24|ENSG00000169962|chr1:1332688-1332689|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	474.74066162109375	2	474.738968	947.463383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.097	1	18.728	18.228	19.228	-0.3695								0	0	0	0.24084	1	6602	6602		44.407	8.28	1				34242	5106	21692	21811	32961	32961		112			-0.012449873110085719
TSDMLAAASKY	11	Unmodified	_TSDMLAAASKY_					0	0	0		nc|ENSG00000099219|Q7Z2K6-2|ERMP1;ERMP1|p.L627Wfs*6|1|0.25|ENSG00000099219|chr9:5805061-5805061|A/-|frameshift_variant;ERMP1|p.T651Pfs*3|1|0.36|ENSG00000099219|chr9:5801292-5801292|T/-|frameshift_variant;ENSG00000099219|ENST00000339450|ERMP1	nc|ENSG00000099219|Q7Z2K6-2|ERMP1	nc|ENSG00000099219|Q7Z2K6-2|ERMP1	MULTI-MSMS	HCT116MG_D190212_S2	2	579.2794799804688	2	579.278989	1156.54342	0.33736	0.00019542	0.27853	0.00016135	0.61589	0.00035677	579.2791892276969	38.761	0.26156	38.677	38.544	38.806	-0.084618					6	4	2	0	0	0	0.49618	1	14597	14597		46.475	32.569	1	14726000			34243	1631	21693	21812	32962	32962					-0.028585457078406762
TSDMLLFLQ	9	Unmodified	_TSDMLLFLQ_					0	0	0			REV__ENSG00000198934|ENST00000361470|MAGEE1	REV__ENSG00000198934|ENST00000361470|MAGEE1	MULTI-SECPEP	HCT116MG_D190212_S2	2	533.7745971679688	2	534.275718	1066.53688	0.73729	0.00039391	1.0381	0.00055462	1.7754	0.00094853	534.276183474989	36.202	0.25823	36.074	35.916	36.174	-0.12799					7	4	2	0	0	0	0.25874	1	13553	13553		7.2892	5.6366	1	8251600	+		34244	14169	21694	21813	32963	32963					0.006275611314549678
TSDMPGTTL	9	Unmodified	_TSDMPGTTL_					0	0	0		ENST00000502577.1_1_5:175813906-175815354:-|nuORF;ENST00000504821.1_1_5:175813875-175815354:-|nuORF	ENST00000502577.1_1_5:175813906-175815354:-|nuORF	ENST00000502577.1_1_5:175813906-175815354:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	922.4188842773438	1	922.418624	921.411348	0.78984	0.00072857	0.10709	9.8781E-05	0.89693	0.00082735	922.4185518397522	38.372	0.36269	38.071	37.885	38.248	-0.30137					13	6	3	0	0	0	0.020181	1	14218	14218		96.285	38.813	1	9557300			34245	8428	21695	21814	32964	32964					-0.05250150724782543
TSDMPGTTL	9	Unmodified	_TSDMPGTTL_					0	0	0		ENST00000502577.1_1_5:175813906-175815354:-|nuORF;ENST00000504821.1_1_5:175813875-175815354:-|nuORF	ENST00000502577.1_1_5:175813906-175815354:-|nuORF	ENST00000502577.1_1_5:175813906-175815354:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	922.4188842773438	1	922.418624	921.411348	0.5883	0.00054265	0.49374	0.00045544	1.082	0.00099809	922.4188632123795	38.466	0.27547	38.084	37.956	38.232	-0.38163					7	5	2	0	0	0	0.027492	1	14117	14117		88.904	40.558	1	3108400			34246	8428	21695	21814	32965	32965					-0.05250150724782543
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S1	1	570.7620849609375	2	570.762017	1139.50948	0.33438	0.00019085	0.23669	0.00013509	0.57107	0.00032595	570.7621149922253	27.568	0.5186	27.568	27.438	27.956	0					24	9	4	0	0	0	8.9367E-11	2	10009	9995;10009		213.63	131.1	1	153170000			34247	2002	21696	21815	32966;32967	32967					-0.05469250875239595
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S1	1	1140.519287109375	1	1140.51676	1139.50948	0.61033	0.00069609	0.14827	0.00016911	0.7586	0.0008652	1141.5194472003996	27.567	0.20648	27.567	27.49	27.696	0					5	3	2	0	0	0	0.002302	1	10048	10048		150.18	96.344	1	6322500			34248	2002	21696	21815	32968	32968					-0.05469250875239595
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S2	2	570.7622680664062	2	570.762017	1139.50948	0.40244	0.0002297	0.32541	0.00018573	0.72785	0.00041543	570.7622222184159	28.074	0.56904	27.744	27.512	28.081	-0.32987					36	10	5	0	0	0	3.459E-07	1	10205	10205		188.38	105.85	1	807640000			34249	2002	21696	21815	32969	32969					-0.05469250875239595
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S2	2	1140.51806640625	1	1140.51676	1139.50948	0.5952	0.00067884	0.18533	0.00021138	0.78054	0.00089022	1140.5169269260125	28.028	0.36271	27.698	27.563	27.926	-0.32987					12	6	3	0	0	0	4.8021E-06	1	10226	10226		176.41	100.65	1	43967000			34250	2002	21696	21815	32970	32970					-0.05469250875239595
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S3	3	570.7621459960938	2	570.762017	1139.50948	0.43789	0.00024993	-0.0067612	-3.859E-06	0.43113	0.00024607	570.7620154082346	27.991	0.72972	27.803	27.569	28.298	-0.18847					38	13	4	0	0	0	4.8831E-10	1	10092	10092		200.78	108.13	1	264700000			34251	2002	21696	21815	32971	32971					-0.05469250875239595
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S3	3	1140.5169677734375	1	1140.51676	1139.50948	0.41523	0.00047358	-0.13565	-0.00015471	0.27958	0.00031887	1140.5162315505474	27.991	0.26012	27.803	27.621	27.881	-0.18847					7	4	2	0	0	0	4.8021E-06	1	10118	10118		176.41	109.95	1	7008200			34252	2002	21696	21815	32972	32972					-0.05469250875239595
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	HCT116MG_D190212_S4	4	570.7619018554688	2	570.762017	1139.50948	0.57442	0.00032785	-0.22344	-0.00012753	0.35097	0.00020032	570.7619230155153	28.161	0.41624	27.83	27.648	28.064	-0.33138					22	7	4	0	0	0	2.9679E-05	1	10104	10104		164.85	82.321	1	62635000			34253	2002	21696	21815	32973	32973					-0.05469250875239595
TSDNPVVQL	9	Unmodified	_TSDNPVVQL_					0	0	0		KPNA3|p.N437Tfs*3|2|0.41|ENSG00000102753|chr13:49705683-49705683|T/-|frameshift_variant;ENSG00000102753|ENST00000261667|KPNA3	KPNA3|p.N437Tfs*3|2|0.41|ENSG00000102753|chr13:49705683-49705683|T/-|frameshift_variant	KPNA3|p.N437Tfs*3|2|0.41|ENSG00000102753|chr13:49705683-49705683|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	972.500244140625	1	972.499652	971.492375	0.62503	0.00060785	0.086869	8.448E-05	0.7119	0.00069233	972.4997257339037	44.01	0.36515	43.704	43.396	43.761	-0.30616					9	6	2	0	0	0	0.0035731	2	16427	16361;16427		174.73	102.81	1	5882700			34254	1848	21697	21816	32974;32975	32975					0.005488733096171927
TSDQATLLLY	10	Unmodified	_TSDQATLLLY_					0	0	0		nc|ENSG00000141627|Q7RTS9-2|DYM;nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM	nc|ENSG00000141627|Q7RTS9-2|DYM	nc|ENSG00000141627|Q7RTS9-2|DYM	MULTI-MSMS	HCT116MG_D190212_S3	3	1124.580810546875	1	1124.58338	1123.5761	0.3587	0.00040339	-1.0804	-0.001215	-0.7217	-0.00081161	1124.5818577095692	54.617	0.20914	54.321	54.19	54.4	-0.29587					5	3	2	0	0	0	0.24395	1	20728	20728		55.503	11.73	1	2979300			34255	3731	21698	21817	32976	32976					0.01925984686704396
TSDQATLLLY	10	Unmodified	_TSDQATLLLY_					0	0	0		nc|ENSG00000141627|Q7RTS9-2|DYM;nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM	nc|ENSG00000141627|Q7RTS9-2|DYM	nc|ENSG00000141627|Q7RTS9-2|DYM	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1124.58338	1123.5761	0.5798	0.00065203	1.0267	0.0011546	1.6065	0.0018067	1124.584106376707	54.416	0.20416	54.227	54.099	54.303	-0.1894	-0.047315	0.00046009	NaN	55.503	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18232000			34256	3731	21698	21817							0.01925984686704396
TSDQPILL	8	Unmodified	_TSDQPILL_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MSMS	HCT116MG_D190212_S2	2	886.4895629882812	1	886.488024	885.480748	0.90246	0.00080002	0.56679	0.00050245	1.4692	0.0013025	886.4883431656457	50.496	0.31588	50.325	50.191	50.507	-0.1719					9	5	2	0	0	0	0.055277	1	19357	19357		117.6	46.465	1	36123000			34257	1679	21699	21818	32977	32977					0.03342676286308688
TSDQPILL	8	Unmodified	_TSDQPILL_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MSMS	HCT116MG_D190212_S3	3	886.48828125	1	886.488024	885.480748	0.7477	0.00066283	-0.27643	-0.00024505	0.47127	0.00041777	886.4877745833322	50.75	0.31274	50.437	50.281	50.594	-0.31381					11	5	3	0	0	0	0.067369	1	19141	19141		104.8	37.455	1	6426000			34258	1679	21699	21818	32978	32978					0.03342676286308688
TSDQQRQLY	9	Unmodified	_TSDQQRQLY_					0	0	0		ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN;nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	569.7780151367188	2	569.778002	1137.54145	0.45206	0.00025758	1.2013	0.0006845	1.6534	0.00094208	569.777507511484	26.214	0.26085	26.214	26.032	26.293	0					10	4	3	0	0	0	0.02327	1	9487	9487		93.166	55.192	1	8397000			34259	6178	21700	21819	32979	32979					-0.021818384014068215
TSDQQRQLY	9	Unmodified	_TSDQQRQLY_					0	0	0		ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN;nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	569.778076171875	2	569.778002	1137.54145	0.31854	0.0001815	2.2691	0.0012929	2.5877	0.0014744	569.7778794612229	26.627	0.31159	26.265	26.076	26.387	-0.36164					18	5	4	0	0	0	0.00086357	1	9644	9644		193.29	117.53	1	48070000			34260	6178	21700	21819	32980	32980					-0.021818384014068215
TSDQQRQLY	9	Unmodified	_TSDQQRQLY_					0	0	0		ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN;nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	569.7782592773438	2	569.778002	1137.54145	0.57169	0.00032574	-0.22441	-0.00012786	0.34728	0.00019788	569.7778086235357	26.326	0.36463	26.177	26.046	26.411	-0.14924					12	6	3	0	0	0	0.0050238	1	9450	9450		137.42	103.02	1	18923000			34261	6178	21700	21819	32981	32981					-0.021818384014068215
TSDQQRQLY	9	Unmodified	_TSDQQRQLY_					0	0	0		ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN;nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	MSMS	HCT116MG_D190212_S4	4	569.7782592773438	2	569.778002	1137.54145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.648	1	26.347	25.847	26.847	-0.30087								0	0	0	1.33E-12	1	9503	9503		174.73	110.49	1				34262	6178	21700	21819	32982	32982					-0.021818384014068215
TSDSPPSNEEE	11	Unmodified	_TSDSPPSNEEE_					0	0	0			REV__nc|ENSG00000145996|Q5VV42-3|CDKAL1	REV__nc|ENSG00000145996|Q5VV42-3|CDKAL1	MULTI-MSMS	HCT116MG_D190212_S2	2	596.3355102539062	2	596.236029	1190.45751	0.80678	0.00048103	-0.545	-0.00032495	0.26179	0.00015609	596.2360604595751	41.705	0.36109	41.637	41.447	41.808	-0.068199					13	6	3	0	0	0	0.48359	2	15755	15755;15773		47.594	9.6204	1	26051000	+		34263	10142	21701	21820	32983;32984	32983					-0.13010459079623615
TSDSPPSNEEE	11	Unmodified	_TSDSPPSNEEE_					0	0	0			REV__nc|ENSG00000145996|Q5VV42-3|CDKAL1	REV__nc|ENSG00000145996|Q5VV42-3|CDKAL1	MULTI-SECPEP	HCT116MG_D190212_S2	2	596.3355102539062	2	596.236029	1190.45751	0.80678	0.00048103	-0.545	-0.00032495	0.26179	0.00015609	596.2360604595751	41.705	0.36109	41.637	41.447	41.808	-0.068199					13	6	3	0	0	0	0.30462	1	15755	15755		47.594	9.6204	1	26051000	+		34264	10142	21701	21820	32985	32985					-0.13010459079623615
TSDSPPSNEEE	11	Unmodified	_TSDSPPSNEEE_					0	0	0			REV__nc|ENSG00000145996|Q5VV42-3|CDKAL1	REV__nc|ENSG00000145996|Q5VV42-3|CDKAL1	MULTI-MSMS	HCT116MG_D190212_S3	3	595.9218139648438	2	596.236029	1190.45751	0.52274	0.00031168	0.57625	0.00034358	1.099	0.00065526	596.2364524081277	41.953	0.24848	41.651	41.48	41.729	-0.30257					8	4	2	0	0	0	0.54124	1	15609	15609		41.956	9.6501	1	6020500	+		34265	10142	21701	21820	32986	32986					-0.13010459079623615
TSDSTVYDY	9	Unmodified	_TSDSTVYDY_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	HCT116MG_D190212_S1	1	1050.4273681640625	1	1050.42621	1049.41894	0.9129	0.00095893	0.35074	0.00036843	1.2636	0.0013274	1050.4261601680091	33.431	0.25977	33.431	33.296	33.556	0					9	4	3	0	0	0	0.0082751	1	12395	12395		117.6	43.176	1	16055000			34266	2493	21702	21821	32987	32987					-0.10379719923503217
TSDSTVYDY	9	Unmodified	_TSDSTVYDY_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	HCT116MG_D190212_S2	2	1051.431884765625	1	1050.42621	1049.41894	0.92698	0.00097372	-0.14387	-0.00015113	0.7831	0.00082259	1050.4258255511204	33.633	0.31083	33.441	33.276	33.587	-0.19297					11	5	3	0	0	0	0.043314	1	12485	12485		77.984	43.882	1	42133000			34267	2493	21702	21821	32988	32988					-0.10379719923503217
TSDSTVYDY	9	Unmodified	_TSDSTVYDY_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	HCT116MG_D190212_S3	3	1050.427001953125	1	1050.42621	1049.41894	0.61395	0.00064491	0.142	0.00014916	0.75594	0.00079406	1050.426210974335	33.879	0.51987	33.585	33.404	33.923	-0.29419					21	9	3	0	0	0	0.0082751	1	12431	12431		117.6	32.242	1	48227000			34268	2493	21702	21821	32989	32989					-0.10379719923503217
TSDSTVYDY	9	Unmodified	_TSDSTVYDY_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	HCT116MG_D190212_S3	3	525.716796875	2	525.716744	1049.41894	0.39783	0.00020915	-0.31666	-0.00016647	0.08117	4.2673E-05	525.7164410811577	33.827	0.36368	33.537	33.408	33.771	-0.29013					8	6	2	0	0	0	0.023611	1	12458	12458		92.822	56.778	1	4869000			34269	2493	21702	21821	32990	32990					-0.10379719923503217
TSDSTVYDY	9	Unmodified	_TSDSTVYDY_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	HCT116MG_D190212_S4	4	1050.4266357421875	1	1050.42621	1049.41894	0.73826	0.00077549	0.37476	0.00039366	1.113	0.0011691	1050.4266230897397	33.876	0.3632	33.491	33.362	33.725	-0.38426					10	6	2	0	0	0	0.019399	1	12350	12350		97.075	39.603	1	6126200			34270	2493	21702	21821	32991	32991					-0.10379719923503217
TSDTDDNKYPN	11	Unmodified	_TSDTDDNKYPN_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MULTI-MSMS	HCT116MG_D190212_S1	1	635.265625	2	635.265121	1268.51569	0.58909	0.00037423	0.20932	0.00013297	0.79841	0.0005072	635.2652505360251	25.427	0.25994	25.427	25.249	25.509	0					10	4	3	0	0	0	0.71532	1	9153	9153		16.149	2.2431	1	17229000	+		34271	11097	21703	21822	32992	32992					-0.10782777434360469
TSDTDDNKYPN	11	Unmodified	_TSDTDDNKYPN_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MULTI-MSMS	HCT116MG_D190212_S2	2	635.265625	2	635.265121	1268.51569	0.41922	0.00026631	0.26532	0.00016855	0.68454	0.00043486	635.2653618635948	25.693	0.36332	25.324	25.135	25.498	-0.36914					14	6	3	0	0	0	0.70991	1	9282	9282		18.146	0	1	25330000	+		34272	11097	21703	21822	32993	32993					-0.10782777434360469
TSDTDDNKYPN	11	Unmodified	_TSDTDDNKYPN_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MULTI-MSMS	HCT116MG_D190212_S3	3	635.2650146484375	2	635.265121	1268.51569	0.61235	0.00038901	-0.44844	-0.00028488	0.16391	0.00010413	635.2648255399035	25.699	0.4167	25.571	25.39	25.807	-0.12795					14	7	4	0	0	0	0.71271	1	9191	9191		17.113	17.113	1	13402000	+		34273	11097	21703	21822	32994	32994					-0.10782777434360469
TSDTDDNKYPN	11	Unmodified	_TSDTDDNKYPN_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MULTI-MATCH	HCT116MG_D190212_S4	4		2	635.265121	1268.51569	0.46793	0.00029726	0.21621	0.00013735	0.68414	0.00043461	635.2653896655783	25.814	0.20816	25.524	25.412	25.62	-0.29022	0.062683	0.00021611	NaN	18.146	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1806600	+		34274	11097	21703	21822							-0.10782777434360469
TSDVDLDKY	9	Unmodified	_TSDVDLDKY_					0	0	0		ENST00000569380.5_1_16:1827941-1828049:-|nuORF;ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3	ENST00000569380.5_1_16:1827941-1828049:-|nuORF	ENST00000569380.5_1_16:1827941-1828049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	528.2576904296875	2	528.248212	1054.48187	0.5119	0.00027041	-0.17031	-8.9965E-05	0.34159	0.00018044	528.2481602931495	32.818	0.41409	32.606	32.325	32.739	-0.21135					18	7	3	0	0	0	0.02327	2	12090	12090;12092		93.166	24.061	1	78238000			34275	4505	21704	21823	32995;32996	32995					-0.04319154135487224
TSDVDLDKY	9	Unmodified	_TSDVDLDKY_					0	0	0		ENST00000569380.5_1_16:1827941-1828049:-|nuORF;ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3	ENST00000569380.5_1_16:1827941-1828049:-|nuORF	ENST00000569380.5_1_16:1827941-1828049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	528.2483520507812	2	528.248212	1054.48187	0.64471	0.00034057	0.0029686	1.5682E-06	0.64768	0.00034214	528.2482922856599	32.993	0.41003	32.708	32.352	32.762	-0.28511					23	10	3	0	0	0	0.0055242	1	12047	12047		133.05	54.324	1	33490000			34276	4505	21704	21823	32997	32997					-0.04319154135487224
TSDVDLDKY	9	Unmodified	_TSDVDLDKY_					0	0	0		ENST00000569380.5_1_16:1827941-1828049:-|nuORF;ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3	ENST00000569380.5_1_16:1827941-1828049:-|nuORF	ENST00000569380.5_1_16:1827941-1828049:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	528.2481689453125	2	528.248212	1054.48187	0.5582	0.00029487	0.72419	0.00038255	1.2824	0.00067742	528.2486621741498	33.017	0.34851	32.635	32.309	32.658	-0.38223					12	7	2	0	0	0	0.026999	1	11996	11996		89.401	33.224	1	10858000			34277	4505	21704	21823	32998	32998					-0.04319154135487224
TSDVGGYYY	9	Unmodified	_TSDVGGYYY_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.R1897Q|1|0.24|ENSG00000131711|chr5:72199045-72199045|G/A|missense_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1024.4267578125	1	1024.42582	1023.41854	0.54083	0.00055404	0.33549	0.00034368	0.87631	0.00089772	1024.4260014590473	38.831	0.31162	38.746	38.597	38.909	-0.084618					9	5	2	0	0	0	0.058138	1	14615	14615		70.716	40.079	1	29248000			34278	3151;9316	21705	21824	32999	32999					-0.09223094852711711
TSDVGGYYY	9	Unmodified	_TSDVGGYYY_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.R1897Q|1|0.24|ENSG00000131711|chr5:72199045-72199045|G/A|missense_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1024.4259033203125	1	1024.42582	1023.41854	0.56746	0.00058132	0.25017	0.00025628	0.81763	0.00083761	1024.4257103454538	39.043	0.36344	38.742	38.561	38.924	-0.30137					13	6	3	0	0	0	0.058138	1	14490	14490		70.716	32.742	1	14056000			34279	3151;9316	21705	21824	33000	33000					-0.09223094852711711
TSDVGGYYY	9	Unmodified	_TSDVGGYYY_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.R1897Q|1|0.24|ENSG00000131711|chr5:72199045-72199045|G/A|missense_variant;MAP1B|p.E2165Gfs*3|1|0.32|ENSG00000131711|chr5:72199841-72199842|-/C|frameshift_variant;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1024.4261474609375	1	1024.42582	1023.41854	0.60628	0.00062109	-0.26977	-0.00027636	0.33651	0.00034473	1024.4254871017506	39.179	0.20806	38.799	38.641	38.849	-0.38055					8	4	2	0	0	0	0.12335	1	14382	14382		53.576	17.069	1	2724900			34280	3151;9316	21705	21824	33001	33001					-0.09223094852711711
TSDVNKLSSFY	11	Unmodified	_TSDVNKLSSFY_					0	0	0		nc|ENSG00000206075|P36952-2|SERPINB5;SERPINB5|p.N223Ifs*59|1|0.37|ENSG00000206075|chr18:63499217-63499217|A/-|frameshift_variant;ENSG00000206075|ENST00000382771|SERPINB5	nc|ENSG00000206075|P36952-2|SERPINB5	nc|ENSG00000206075|P36952-2|SERPINB5	MSMS	HCT116MG_D190212_S1	1	630.810791015625	2	630.808968	1259.60338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.518	1	53.518	53.018	54.018	0								0	0	0	0.94012	1	20498	20498		11.495	1.3441	1				34281	6393	21706	21825	33002	33002					-0.016035317729574672
TSDWHCSPS	9	Unmodified	_TSDWHCSPS_					0	0	0			REV__TEX14|p.G1117Hfs*15|1|0.12|ENSG00000121101|chr17:58579689-58579692|CACC/-|frameshift_variant	REV__TEX14|p.G1117Hfs*15|1|0.12|ENSG00000121101|chr17:58579689-58579692|CACC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	510.1961364746094	2	510.197999	1018.38144	0.50046	0.00025533	-2.0705	-0.0010564	-1.5701	-0.00080104	510.1969554796274	31.914	0.62188	31.675	31.364	31.985	-0.23924					16	11	2	0	0	0	0.66792	1	11789	11789		7.2892	0.56607	1	25108000	+		34282	11708	21707	21826	33003	33003					-0.12701089670110832
TSDYYGEDSNP	11	Unmodified	_TSDYYGEDSNP_					0	0	0			REV__AMER1|p.E485Ifs*48|1|0.75|ENSG00000184675|chrX:64191811-64191835|CCTGCGGACAAGCCCCAGGGCCTCA/-|frameshift_variant	REV__AMER1|p.E485Ifs*48|1|0.75|ENSG00000184675|chrX:64191811-64191835|CCTGCGGACAAGCCCCAGGGCCTCA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	624.237060546875	2	624.238572	1246.46259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.647	1	27.325	26.825	27.825	-0.32157								0	0	0	0.95196	1	9907	9907		5.2969	0	1		+		34283	9933	21708	21827	33004	33004					-0.1507815521702014
TSEAQRTLK	9	Unmodified	_TSEAQRTLK_					0	0	0		CCDC82|p.T231Nfs*27|1|0.22|ENSG00000149231|chr11:96384056-96384057|-/T|frameshift_variant	CCDC82|p.T231Nfs*27|1|0.22|ENSG00000149231|chr11:96384056-96384057|-/T|frameshift_variant	CCDC82|p.T231Nfs*27|1|0.22|ENSG00000149231|chr11:96384056-96384057|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	517.2852783203125	2	517.285463	1032.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.544	1	39.163	38.663	39.663	-0.38055								0	0	0	0.76913	1	14532	14532		3.9444	0	1				34284	356	21709	21828	33005	33005					0.041396534665636864
TSEASRAGRP	10	Unmodified	_TSEASRAGRP_					0	0	0			REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2	REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2	MSMS	HCT116MG_D190212_S4	4	516.2675170898438	2	516.265062	1030.51557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.595	1	27.273	26.773	27.773	-0.32157								0	0	0	0.90475	1	9886	9886		14.838	2.3067	1		+		34285	17114	21710	21829	33006	33006					0.001533121469492471
TSEDISQTSKY	11	Unmodified	_TSEDISQTSKY_					0	0	0		nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3	nc|ENSG00000173210|O94929-2|ABLIM3	nc|ENSG00000173210|O94929-2|ABLIM3	MULTI-SECPEP	HCT116MG_D190212_S2	2	630.3366088867188	2	629.793514	1257.57248	0.51483	0.00032423	0.30954	0.00019495	0.82437	0.00051918	629.7938912494943	24.75	0.20821	24.37	24.239	24.448	-0.38003					5	3	2	0	0	0	0.12542	1	8901	8901		70.332	58.091	1	12261000			34286	5279	21711	21830	33007	33007					-0.04600729877847698
TSEEQVIMMMS	11	Unmodified	_TSEEQVIMMMS_					0	0	0		ENST00000545703.5_1_X:117033172-117033226:-|nuORF	ENST00000545703.5_1_X:117033172-117033226:-|nuORF	ENST00000545703.5_1_X:117033172-117033226:-|nuORF	MSMS	HCT116MG_D190212_S3	3	643.2770385742188	2	643.277274	1284.54	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.633	1	29.397	28.897	29.897	-0.23655								0	0	0	0.94538	1	10773	10773		8.7454	0	1				34287	8721	21712	21831	33008	33008					-0.09089299868355738
TSEESSFVFPL	11	Unmodified	_TSEESSFVFPL_					0	0	0		nc|ENSG00000179869|Q86UQ4-4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4|ABCA13;ABCA13|p.A4442Pfs*3|1|0.06|ENSG00000179869|chr7:48506365-48506365|G/-|frameshift_variant;ABCA13|p.K3855Nfs*139|1|0.3|ENSG00000179869|chr7:48389131-48389153|GGCTGTGGTCCAAGACCTCAGCC/-|frameshift_variant;ABCA13|p.L1248Tfs*2|1|0.16|ENSG00000179869|chr7:48273400-48273401|-/A|frameshift_variant;ABCA13|p.H2188Ifs*3|1|0.11|ENSG00000179869|chr7:48276226-48276226|C/-|frameshift_variant;ABCA13|p.K1949Rfs*10|1|0.04|ENSG00000179869|chr7:48275509-48275510|-/TCGGG|frameshift_variant;ABCA13|p.N1764Tfs*18|1|0.33|ENSG00000179869|chr7:48274953-48274953|A/-|frameshift_variant;ABCA13|p.S1533Lfs*16|1|0.1|ENSG00000179869|chr7:48274262-48274263|-/CT|frameshift_variant;ABCA13|p.E1535Lfs*6|1|0.06|ENSG00000179869|chr7:48274267-48274268|-/TTTAGGTTTCTTCTCT|frameshift_variant;ABCA13|p.P1447Tfs*22|1|0.49|ENSG00000179869|chr7:48273997-48273998|-/A|frameshift_variant	nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4-4|ABCA13	MSMS	HCT116MG_D190212_S4	4	621.7953491210938	2	621.798069	1241.58158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.395	1	35.009	34.509	35.509	-0.38606								0	0	0	0.94416	1	12962	12962		9.3831	0.63772	1				34288	5569	21713	21832	33009	33009					-0.029543365214976802
TSEETVGGAI	10	Unmodified	_TSEETVGGAI_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-SECPEP	HCT116MG_D190212_S2	2	481.7614440917969	2	482.235104	962.455655	0.12673	6.1111E-05	1.3519	0.00065195	1.4787	0.00071306	482.23563735089425	23.331	0.31114	22.946	22.778	23.089	-0.3852					7	5	2	0	0	0	0.28496	1	8297	8297		13.906	4.5586	1	6174500			34289	1596	21714	21833	33010	33010					-0.027074233069356524
TSEFFEQGDR	10	Unmodified	_TSEFFEQGDR_					0	0	0		nc|ENSG00000128655|Q9HCR9-4|PDE11A;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A	nc|ENSG00000128655|Q9HCR9-4|PDE11A	nc|ENSG00000128655|Q9HCR9-4|PDE11A	MSMS	HCT116MG_D190212_S4	4	608.2662963867188	2	608.267467	1214.52038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.948	1	14.788	14.288	15.288	-0.16089								0	0	0	0.93202	1	4779	4779		8.7454	0.58988	1				34290	3006	21715	21834	33011	33011					-0.0782984850095545
TSEFSRLYN	9	Unmodified	_TSEFSRLYN_					0	0	0			REV__ENST00000417871.5_1_21:34958320-34959859:-|nuORF	REV__ENST00000417871.5_1_21:34958320-34959859:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	559.3047485351562	2	558.769645	1115.52474	0.40446	0.000226	0.10954	6.1205E-05	0.514	0.00028721	558.7694972295619	36.422	0.8046	36.036	35.526	36.331	-0.38558					27	15	2	0	0	0	0.65706	1	13185	13185		7.9102	0	1	4288200	+		34291	15491	21716	21835	33012	33012					-0.028403392873769917
TSEFTQERSPI	11	Unmodified	_TSEFTQERSPI_					0	0	0		ENST00000444149.6_1_5:178459796-178460024:+|nuORF	ENST00000444149.6_1_5:178459796-178460024:+|nuORF	ENST00000444149.6_1_5:178459796-178460024:+|nuORF	MSMS	HCT116MG_D190212_S4	4	647.8146362304688	2	647.817324	1293.62009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.023	1	36.638	36.138	37.138	-0.38486								0	0	0	0.95113	1	13571	13571		5.7319	2.1354	1				34292	7942	21717	21836	33013	33013					-0.014970308869806104
TSEHVPRYHEW	11	Unmodified	_TSEHVPRYHEW_					0	0	0		ENST00000582168.5_1_17:72769619-72771837:-|nuORF;ENST00000583834.5_1_17:72768345-72771837:-|nuORF;ENST00000585240.5_1_17:72768620-72771837:-|nuORF;nc|ENSG00000109065|Q9BTE0-2|NAT9	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	MSMS	HCT116MG_D190212_S4	4	720.8342895507812	2	720.836382	1439.65821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.608	1	28.277	27.777	28.777	-0.33138								0	0	0	0.9387	1	10295	10295		12.241	0.74595	1				34293	8959	21718	21837	33014	33014					-0.04403100181662012
TSEHVPSRY	9	Unmodified	_TSEHVPSRY_					0	0	0		ENST00000582993.5_1_17:72769619-72771837:-|nuORF;ENST00000577428.5_1_17:72768529-72772472:-|nuORF;ENST00000583689.5_1_17:72768918-72771837:-|nuORF;ENSG00000109065|ENST00000357814|NAT9	ENST00000582993.5_1_17:72769619-72771837:-|nuORF	ENST00000582993.5_1_17:72769619-72771837:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.782958984375	2	538.261988	1074.50942	0.44483	0.00023943	-0.21899	-0.00011787	0.22584	0.00012156	538.2618124389709	21.112	0.20838	20.729	20.598	20.807	-0.38288					5	3	2	0	0	0	0.24524	1	7398	7398		14.405	5.0223	1	5422200			34294	2191	21719	21838	33015	33015					-0.024852060845660162
TSEILPKCSMP	11	Unmodified	_TSEILPKCSMP_					0	0	0		ENST00000527171.5_1_11:6947900-6948999:+|nuORF	ENST00000527171.5_1_11:6947900-6948999:+|nuORF	ENST00000527171.5_1_11:6947900-6948999:+|nuORF	MSMS	HCT116MG_D190212_S4	4	603.299560546875	2	603.298867	1204.58318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.658	1	26.357	25.857	26.857	-0.30087								0	0	0	0.93552	1	9507	9507		13.906	0.86358	1				34295	8594	21720	21839	33016	33016					-0.010927420287771383
TSEKAKICP	9	Unmodified	_TSEKAKICP_					0	0	0		nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179	nc|ENSG00000277399|Q6PRD1|GPR179	nc|ENSG00000277399|Q6PRD1|GPR179	MSMS	HCT116MG_D190212_S4	4	488.76031494140625	2	488.760235	975.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.52	1	18.339	17.839	18.839	-0.18052								0	0	0	0.76669	1	6221	6221		12.532	0.89125	1				34296	6686	21721	21840	33017	33017					0.017184078171908368
TSEKIFDG	8	Unmodified	_TSEKIFDG_					0	0	0			REV__ENST00000495355.1_1_2:32503224-32515745:+|nuORF	REV__ENST00000495355.1_1_2:32503224-32515745:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	448.7200927734375	2	448.721633	895.428712	0.17896	8.0304E-05	-0.52646	-0.00023623	-0.3475	-0.00015593	448.7212180976457	34.221	0.72718	34.046	33.552	34.279	-0.17512					23	13	2	0	0	0	0.60054	1	12694	12694		32.305	6.9062	1	15660000	+		34297	11673	21722	21841	33018	33018					-0.023184871274793295
TSEKRTEGW	9	Unmodified	_TSEKRTEGW_					0	0	0			REV__ENST00000486135.1_1_2:71356897-71357349:-|nuORF	REV__ENST00000486135.1_1_2:71356897-71357349:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	547.2677001953125	2	547.26727	1092.51999	0.51802	0.0002835	-0.096844	-5.3E-05	0.42118	0.0002305	547.267153124996	28.513	0.36493	28.307	28.072	28.437	-0.20593					11	6	2	0	0	0	0.2853	1	10310	10310		32.305	1.6689	1	4254200	+		34298	15989	21723	21842	33019	33019					-0.022572234301378558
TSEKVKNKIL	10	Unmodified	_TSEKVKNKIL_					0	0	0		GGA1|p.R485Gfs*31|1|0.44|ENSG00000100083|chr22:37631018-37631018|C/-|frameshift_variant;nc|ENSG00000100083|Q9UJY5-4|GGA1;nc|ENSG00000100083|Q9UJY5-3|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1	GGA1|p.R485Gfs*31|1|0.44|ENSG00000100083|chr22:37631018-37631018|C/-|frameshift_variant	GGA1|p.R485Gfs*31|1|0.44|ENSG00000100083|chr22:37631018-37631018|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	580.35400390625	2	580.355888	1158.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.554	1	36.169	35.669	36.669	-0.38535								0	0	0	0.95507	1	13381	13381		3.5965	0.31518	1				34299	1661	21724	21843	33020	33020					0.12422232119979526
TSEKWPQRAR	10	Unmodified	_TSEKWPQRAR_					0	0	0			REV__nc|ENSG00000131697|O75161-2|NPHP4	REV__nc|ENSG00000131697|O75161-2|NPHP4	MSMS	HCT116MG_D190212_S2	2	629.7939453125	2	629.836185	1257.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.84	1	24.465	23.965	24.965	-0.37521								0	0	0	0.92607	1	8919	8919		10.074	0.6908	1		+		34300	11966	21725	21844	33021	33021					0.03929524889122149
TSENAELHKNQ	11	Unmodified	_TSENAELHKNQ_					0	0	0		ENST00000485726.1_1_7:103828377-103828729:-|nuORF	ENST00000485726.1_1_7:103828377-103828729:-|nuORF	ENST00000485726.1_1_7:103828377-103828729:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	635.8050537109375	2	635.804748	1269.59494	0.66751	0.00042441	0.22406	0.00014246	0.89157	0.00056687	635.8046329068179	24.333	0.67609	23.953	23.406	24.082	-0.38003					23	12	2	0	0	0	0.7093	1	8623	8623		18.373	1.2602	1	30182000			34301	8287	21726	21845	33022	33022					-0.029070856895714314
TSENAELHKNQ	11	Unmodified	_TSENAELHKNQ_					0	0	0		ENST00000485726.1_1_7:103828377-103828729:-|nuORF	ENST00000485726.1_1_7:103828377-103828729:-|nuORF	ENST00000485726.1_1_7:103828377-103828729:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	635.8051147460938	2	635.804748	1269.59494	0.44654	0.00028392	0.12667	8.0538E-05	0.57322	0.00036445	635.8047890655475	23.907	1.4062	23.845	23.217	24.624	-0.061449					65	26	4	0	0	0	0.72004	1	8543	8543		14.405	2.1647	1	40138000			34302	8287	21726	21845	33023	33023					-0.029070856895714314
TSENAELHKNQ	11	Unmodified	_TSENAELHKNQ_					0	0	0		ENST00000485726.1_1_7:103828377-103828729:-|nuORF	ENST00000485726.1_1_7:103828377-103828729:-|nuORF	ENST00000485726.1_1_7:103828377-103828729:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	635.8048095703125	2	635.804748	1269.59494	0.52483	0.00033369	0.18367	0.00011678	0.7085	0.00045046	635.804802451616	24.12	1.0392	23.861	23.209	24.248	-0.25816					47	19	4	0	0	0	0.7259	1	8320	8320		12.241	12.241	1	34433000			34303	8287	21726	21845	33024	33024					-0.029070856895714314
TSENAELHKNQ	11	Unmodified	_TSENAELHKNQ_					0	0	0		ENST00000485726.1_1_7:103828377-103828729:-|nuORF	ENST00000485726.1_1_7:103828377-103828729:-|nuORF	ENST00000485726.1_1_7:103828377-103828729:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	635.804748	1269.59494	0.68961	0.00043846	0.075984	4.8311E-05	0.7656	0.00048677	635.8046571147694	23.863	0.57488	23.863	23.418	23.993	0	-0.017767	-0.00010049	NaN	18.373	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7397800			34304	8287	21726	21845							-0.029070856895714314
TSEPESPKAP	10	Unmodified	_TSEPESPKAP_					0	0	0			REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	521.7568359375	2	521.756204	1041.49785	0.2422	0.00012637	0.74634	0.0003894	0.98853	0.00051577	521.7569701369281	26.404	0.31207	26.104	25.922	26.234	-0.30087					8	5	2	0	0	0	0.73913	1	9442	9442		17.113	0	1	1561200	+		34305	9992	21727	21846	33025	33025					-0.021234478985661553
TSEPHNQNFAK	11	Unmodified	_TSEPHNQNFAK_					0	0	0			REV__nc|ENSG00000116044|Q16236-3|NFE2L2	REV__nc|ENSG00000116044|Q16236-3|NFE2L2	MSMS	HCT116MG_D190212_S3	3	636.8021240234375	2	636.802008	1271.58946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.733	1	34.436	33.936	34.936	-0.29707								0	0	0	0.9387	1	12795	12795		12.241	3.4953	1		+		34306	11569	21728	21847	33026	33026					-0.035467644813934385
TSEPKGNSWAP	11	Unmodified	_TSEPKGNSWAP_					0	0	0		ENSG00000158286|ENST00000377939|RNF207	ENSG00000158286|ENST00000377939|RNF207	ENSG00000158286|ENST00000377939|RNF207	MULTI-MSMS	HCT116MG_D190212_S4	4	587.7830200195312	2	587.280377	1172.5462	0.36981	0.00021718	-0.10537	-6.1881E-05	0.26444	0.0001553	587.2801482853141	22.963	1.1483	22.726	22.133	23.282	-0.23758					26	21	2	0	0	0	0.71776	1	8076	8076		15.248	0	1	1717200			34307	4364	21729	21848	33027	33027					-0.03316954258662008
TSEPKGSDHLE	11	Unmodified	_TSEPKGSDHLE_					0	0	0			REV__ENST00000522319.5_3_8:99135677-99139891:+|nuORF	REV__ENST00000522319.5_3_8:99135677-99139891:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	600.2806396484375	2	600.280574	1198.5466	0.78684	0.00047233	-0.24724	-0.00014842	0.5396	0.00032391	600.2799895944793	28.754	0.41642	28.538	28.219	28.635	-0.21602					12	7	2	0	0	0	0.65047	1	10437	10437		29.841	7.1043	1	2923000	+		34308	16246	21730	21849	33028	33028					-0.04473579329464883
TSEPKGSDHLE	11	Unmodified	_TSEPKGSDHLE_					0	0	0			REV__ENST00000522319.5_3_8:99135677-99139891:+|nuORF	REV__ENST00000522319.5_3_8:99135677-99139891:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	600.280574	1198.5466	0.78684	0.00047233	-0.24724	-0.00014842	0.5396	0.00032391	600.2799895944793	28.754	0.41642	28.538	28.219	28.635	-0.21602	0.022567	0.00023628	NaN	29.841	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2923000	+		34309	16246	21730	21849							-0.04473579329464883
TSEQTHALESP	11	Unmodified	_TSEQTHALESP_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	HCT116MG_D190212_S4	4	600.2804565429688	2	600.280574	1198.5466	1.2103	0.0007265	-0.54736	-0.00032857	0.66292	0.00039794	600.279983194608	28.833	0.51927	28.493	28.055	28.574	-0.3406					16	9	3	0	0	0	0.70073	1	10364	10364		21.537	0	1	4204500			34310	5859	21731	21850	33029	33029					-0.044735793295103576
TSERESTVEI	10	Unmodified	_TSERESTVEI_					0	0	0			REV__ENSG00000102804|ENST00000458659|TSC22D1	REV__ENSG00000102804|ENST00000458659|TSC22D1	MSMS	HCT116MG_D190212_S3	3	575.7832641601562	2	575.78295	1149.55135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.539	1	15.625	15.125	16.125	0.085423								0	0	0	0.94339	1	5092	5092		6.2058	0	1		+		34311	11162	21732	21851	33030	33030					-0.017446951866986637
TSERGSFSLY	10	Unmodified	_TSERGSFSLY_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant;TCF12|p.V183Sfs*21|1|0.24|ENSG00000140262|chr15:57197785-57197786|-/A|frameshift_variant;TCF12|p.T335Lfs*71|1|0.04|ENSG00000140262|chr15:57234074-57234075|-/TT|frameshift_variant	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	HCT116MG_D190212_S1	1	573.7749633789062	2	573.774928	1145.5353	0.55117	0.00031625	-0.1529	-8.7731E-05	0.39827	0.00022852	573.7746977128883	41.835	0.26049	41.835	41.706	41.966	0					12	4	3	0	0	0	0.12401	1	15764	15764		69.338	27.499	1	51958000			34312	3656	21733	21852	33031	33031					-0.031643566329421446
TSERGSFSLY	10	Unmodified	_TSERGSFSLY_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant;TCF12|p.V183Sfs*21|1|0.24|ENSG00000140262|chr15:57197785-57197786|-/A|frameshift_variant;TCF12|p.T335Lfs*71|1|0.04|ENSG00000140262|chr15:57234074-57234075|-/TT|frameshift_variant	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-MSMS	HCT116MG_D190212_S2	2	573.77490234375	2	573.774928	1145.5353	0.4579	0.00026273	0.02139	1.2273E-05	0.47929	0.000275	573.7748146402299	41.799	0.46639	41.731	41.498	41.964	-0.068199					22	8	4	0	0	0	0.39839	1	15805	15805		42.312	0.47285	1	210000000			34313	3656	21733	21852	33032	33032					-0.031643566329421446
TSERGSFSLY	10	Unmodified	_TSERGSFSLY_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant;TCF12|p.V183Sfs*21|1|0.24|ENSG00000140262|chr15:57197785-57197786|-/A|frameshift_variant;TCF12|p.T335Lfs*71|1|0.04|ENSG00000140262|chr15:57234074-57234075|-/TT|frameshift_variant	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-SECPEP	HCT116MG_D190212_S3	3	573.2592163085938	2	573.774928	1145.5353	0.46744	0.00026821	0.30254	0.00017359	0.76999	0.0004418	573.7748642697056	42.109	0.50805	41.807	41.48	41.988	-0.30257					15	9	3	0	0	0	0.26362	1	15706	15706		32.037	17.199	1	16422000			34314	3656	21733	21852	33033	33033					-0.031643566329421446
TSERGSFSLY	10	Unmodified	_TSERGSFSLY_					0	0	0		ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;TCF12|p.V474Mfs*18|1|0.15|ENSG00000140262|chr15:57262114-57262123|CTCTGTCAGT/-|frameshift_variant;TCF12|p.D536Afs*2|1|0.04|ENSG00000140262|chr15:57263207-57263208|-/C|frameshift_variant;TCF12|p.V183Sfs*21|1|0.24|ENSG00000140262|chr15:57197785-57197786|-/A|frameshift_variant;TCF12|p.T335Lfs*71|1|0.04|ENSG00000140262|chr15:57234074-57234075|-/TT|frameshift_variant	ENSG00000140262|ENST00000333725|TCF12	ENSG00000140262|ENST00000333725|TCF12	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	573.774928	1145.5353	0.50514	0.00028983	-0.53002	-0.00030411	-0.024889	-1.4281E-05	573.7750932741948	42.178	0.25888	41.802	41.684	41.942	-0.37565	0.0083255	-0.00059464	NaN	69.338	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2144100			34315	3656	21733	21852							-0.031643566329421446
TSERSEQFGQ	10	Unmodified	_TSERSEQFGQ_					0	0	0			REV__ENST00000400556.7_1_18:9547583-9547781:-|nuORF	REV__ENST00000400556.7_1_18:9547583-9547781:-|nuORF	MSMS	HCT116MG_D190212_S3	3	584.7654418945312	2	584.765091	1167.51563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.516	1	15.601	15.101	16.101	0.085423								0	0	0	0.93202	1	5082	5082		8.7454	0.15213	1		+		34316	15391	21734	21853	33034	33034					-0.061427326437069496
TSERTKANPEP	11	Unmodified	_TSERTKANPEP_					0	0	0			REV__ENST00000583091.1_1_17:28395652-28396225:+|nuORF	REV__ENST00000583091.1_1_17:28395652-28396225:+|nuORF	MSMS	HCT116MG_D190212_S3	3	615.3104858398438	2	615.309666	1228.60478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.061	1	21.096	20.596	21.596	0.034473								0	0	0	0.94755	1	7320	7320		7.609	0.50723	1		+		34317	16634	21735	21854	33035	33035					-0.00037897684183008096
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	563.3085327148438	2	562.806562	1123.59857	0.66781	0.00037585	0.030079	1.6928E-05	0.69789	0.00039278	562.8065250951857	28.651	0.36905	28.651	28.482	28.851	0					17	6	4	0	0	0	0.0039465	3	10435	10398;10435;10453		151.48	82.375	1	46594000			34318	668	21736	21855	33036;33037;33038	33037					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	375.5400085449219	3	375.540134	1123.59857	0.16747	6.2892E-05	-0.26557	-9.9734E-05	-0.098102	-3.6841E-05	375.5399761722916	28.619	0.26461	28.619	28.482	28.746	0					10	4	3	0	0	0	0.0045841	1	10454	10454		117.84	54.61	1	30426000			34319	668	21736	21855	33039	33039					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	562.8070678710938	2	562.806562	1123.59857	0.42923	0.00024158	0.19559	0.00011008	0.62482	0.00035165	562.8065864092576	29.152	0.40955	28.836	28.606	29.015	-0.31613					21	7	4	0	0	0	0.0024989	1	10648	10648		184.36	105.63	1	404250000			34320	668	21736	21855	33040	33040					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	375.5399475097656	3	375.540134	1123.59857	-0.18936	-7.1112E-05	0.032056	1.2038E-05	-0.1573	-5.9074E-05	375.5400662168597	29.136	0.30692	28.82	28.657	28.964	-0.31613					13	5	4	0	0	0	0.0058997	1	10655	10655		107.56	31.993	1	147790000			34321	668	21736	21855	33041	33041					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	562.8068237304688	2	562.806562	1123.59857	0.50219	0.00028264	0.012281	6.912E-06	0.51447	0.00028955	562.8064687546687	29.086	0.46856	28.864	28.681	29.15	-0.22195					20	8	4	0	0	0	0.0034297	1	10553	10553		159.1	89.996	1	63466000			34322	668	21736	21855	33042	33042					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	375.5401611328125	3	375.540134	1123.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.09	1	28.868	28.368	29.368	-0.22195								0	0	0	0.0099415	1	10554	10554		88.364	25.136	1				34323	668	21736	21855	33043	33043					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	563.308349609375	2	562.806562	1123.59857	0.24129	0.0001358	0.27514	0.00015485	0.51642	0.00029065	562.8066571651367	29.308	0.36348	28.959	28.773	29.137	-0.34921					12	6	3	0	0	0	0.0056012	1	10578	10578		132.38	84.631	1	17486000			34324	668	21736	21855	33044	33044					0.04171628874951239
TSERTVLRY	9	Unmodified	_TSERTVLRY_					0	0	0		DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant;DHX16|p.I1033*|5|0.32|ENSG00000204560|chr6:30653271-30653271|T/-|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	375.5399475097656	3	375.540134	1123.59857	0.005389	2.0238E-06	-0.16191	-6.0804E-05	-0.15652	-5.878E-05	375.5399528008469	29.304	0.25951	28.955	28.825	29.085	-0.34921					10	4	3	0	0	0	0.0080847	1	10581	10581		97.741	42.506	1	10254000			34325	668	21736	21855	33045	33045					0.04171628874951239
TSERWLREQD	10	Unmodified	_TSERWLREQD_					0	0	0			REV__FCHO1|p.R152W|1|0.32|ENSG00000130475|chr19:17770542-17770542|C/T|missense_variant	REV__FCHO1|p.R152W|1|0.32|ENSG00000130475|chr19:17770542-17770542|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	660.3199462890625	2	660.320565	1318.62658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.406	1	24.137	23.637	24.637	-0.26881								0	0	0	0.91279	1	8597	8597		13.042	4.2971	1		+		34326	16815	21737	21856	33046	33046					-0.019990929356254128
TSETPDYLLKY	11	Unmodified	_TSETPDYLLKY_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	HCT116MG_D190212_S1	1	665.3328857421875	2	665.332276	1328.65	0.85969	0.00057198	-0.35188	-0.00023411	0.50781	0.00033787	665.3319773111795	46.123	0.25971	46.123	45.922	46.182	0					6	4	2	0	0	0	0.025539	1	17508	17508		128.57	98.732	1	29341000			34327	2022	21738	21857	33047	33047					-0.0011809194165834924
TSETPDYLLKY	11	Unmodified	_TSETPDYLLKY_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	HCT116MG_D190212_S2	2	665.3324584960938	2	665.332276	1328.65	0.39123	0.0002603	0.31603	0.00021026	0.70725	0.00047056	665.3323402294352	46.144	0.36055	46.043	45.863	46.223	-0.1014					19	6	4	0	0	0	0.0030383	1	17552	17552		147.24	110.73	1	102970000			34328	2022	21738	21857	33048	33048					-0.0011809194165834924
TSETPDYLLKY	11	Unmodified	_TSETPDYLLKY_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	HCT116MG_D190212_S3	3	665.3325805664062	2	665.332276	1328.65	1.0322	0.00068677	0.69864	0.00046483	1.7309	0.0011516	665.3329042982344	46.31	0.22469	45.998	45.902	46.126	-0.31237					6	5	2	0	0	0	0.2198	1	17410	17410		73.196	43.356	1	9851600			34329	2022	21738	21857	33049	33049					-0.0011809194165834924
TSEVRLYTVRW	11	Unmodified	_TSEVRLYTVRW_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MSMS	HCT116MG_D190212_S3	3	705.3812255859375	2	705.380426	1408.7463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.09	1	42.785	42.285	43.285	-0.30472								0	0	0	0.95113	1	16071	16071		5.7319	0.83484	1				34330	5935	21739	21858	33050	33050					0.05827520408934106
TSEYHRKLE	9	Unmodified	_TSEYHRKLE_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MSMS	HCT116MG_D190212_S4	4	581.7949829101562	2	581.796195	1161.57784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.265	1	26.953	26.453	27.453	-0.3114								0	0	0	0.76694	1	9752	9752		11.64	0	1		+		34331	13122	21740	21859	33051	33051					0.0035103849527331477
TSFAKSRGES	10	Unmodified	_TSFAKSRGES_					0	0	0			REV__ENSG00000136839|ENST00000259362|OR13C9	REV__ENSG00000136839|ENST00000259362|OR13C9	MSMS	HCT116MG_D190212_S4	4	535.264892578125	2	535.26727	1068.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.737	1	34.351	33.851	34.851	-0.38593								0	0	0	0.93202	1	12696	12696		8.7454	2.0222	1		+		34332	12144	21741	21860	33052	33052					-0.01153223430151229
TSFAQPDPQQQ	11	Unmodified	_TSFAQPDPQQQ_					0	0	0			REV__ENST00000461438.5_1_10:120917240-120925159:-|nuORF	REV__ENST00000461438.5_1_10:120917240-120925159:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	624.2901611328125	2	623.788566	1245.56258	0.34193	0.00021329	-0.093104	-5.8077E-05	0.24883	0.00015521	623.7884947566778	30.875	0.64075	30.614	30.277	30.917	-0.26071					22	13	2	0	0	0	0.70059	1	11173	11173		21.59	0	1	8704600	+		34333	15783	21742	21861	33053	33053					-0.05037873092578593
TSFAQPDPQQQ	11	Unmodified	_TSFAQPDPQQQ_					0	0	0			REV__ENST00000461438.5_1_10:120917240-120925159:-|nuORF	REV__ENST00000461438.5_1_10:120917240-120925159:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	623.7892456054688	2	623.788566	1245.56258	0.27919	0.00017416	0.079262	4.9443E-05	0.35846	0.0002236	623.7886516890575	30.352	0.50541	29.995	29.545	30.05	-0.3571					16	11	2	0	0	0	0.69464	1	10970	10970		23.79	5.6434	1	10173000	+		34334	15783	21742	21861	33054	33054					-0.05037873092578593
TSFATHNEPL	10	Unmodified	_TSFATHNEPL_					0	0	0			REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	558.291015625	2	558.769645	1115.52474	0.40446	0.000226	0.10954	6.1205E-05	0.514	0.00028721	558.7694972295619	36.422	0.8046	36.036	35.526	36.331	-0.38558					27	15	2	0	0	0	0.2916	1	13288	13288		17.113	0	1	4288200	+		34335	12730	21743	21862	33055	33055					-0.028403392873769917
TSFCAMRPPQ	10	Unmodified	_TSFCAMRPPQ_					0	0	0		ENST00000372398.5_1_9:132988779-132995318:+|nuORF	ENST00000372398.5_1_9:132988779-132995318:+|nuORF	ENST00000372398.5_1_9:132988779-132995318:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	569.2621459960938	2	569.262619	1136.51068	0.55796	0.00031762	-0.7501	-0.000427	-0.19214	-0.00010938	569.2619427547753	21.099	0.51907	20.889	20.656	21.175	-0.20959					17	9	2	0	0	0	0.67188	1	7261	7261		22.736	2.3217	1	3318200			34336	7456	21744	21863	33056	33056					-0.052110313116827456
TSFCAMRPPQ	10	Unmodified	_TSFCAMRPPQ_					0	0	0		ENST00000372398.5_1_9:132988779-132995318:+|nuORF	ENST00000372398.5_1_9:132988779-132995318:+|nuORF	ENST00000372398.5_1_9:132988779-132995318:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	569.262619	1136.51068	0.31557	0.00017964	-0.19015	-0.00010825	0.12542	7.1398E-05	569.2624444115273	21.148	0.41697	21.175	20.914	21.331	0.026411	0.14276	0.0002447	NaN	22.736	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4586100			34337	7456	21744	21863							-0.052110313116827456
TSFDLYYPP	9	Unmodified	_TSFDLYYPP_					0	0	0			REV__FRAS1|p.Q945P|1|0.2|ENSG00000138759|chr4:78369949-78369949|A/C|missense_variant	REV__FRAS1|p.Q945P|1|0.2|ENSG00000138759|chr4:78369949-78369949|A/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	551.7557983398438	2	551.758215	1101.50188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.512	1	15.185	14.685	15.685	-0.32684								0	0	0	0.76781	1	5159	5159		8.5933	1.304	1		+		34338	16837	21745	21864	33057	33057					-0.04481358404859748
TSFDSFRKE	9	Unmodified	_TSFDSFRKE_					0	0	0			REV__ENSG00000143067|ENST00000421812|ZNF697	REV__ENSG00000143067|ENST00000421812|ZNF697	MULTI-MSMS	HCT116MG_D190212_S4	4	559.2722778320312	2	558.769645	1115.52474	0.40446	0.000226	0.10954	6.1205E-05	0.514	0.00028721	558.7694972295619	36.422	0.8046	36.036	35.526	36.331	-0.38558					27	15	2	0	0	0	0.45867	1	13222	13222		19.257	0	1	4288200	+		34339	12375	21746	21865	33058	33058					-0.028403392873769917
TSFGNEQHAP	10	Unmodified	_TSFGNEQHAP_					0	0	0			REV__ENST00000487114.1_1_1:36644989-36645856:+|nuORF	REV__ENST00000487114.1_1_1:36644989-36645856:+|nuORF	MSMS	HCT116MG_D190212_S4	4	544.24365234375	2	544.243795	1086.47304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.736	1	33.352	32.852	33.852	-0.38426								0	0	0	0.92272	1	12291	12291		10.824	1.4765	1		+		34340	11597	21747	21866	33059	33059					-0.06674082981294305
TSFGYQLP	8	Unmodified	_TSFGYQLP_					0	0	0		NLRP11|p.N817Ifs*7|1|0.4|ENSG00000179873|chr19:55792364-55792364|T/-|frameshift_variant;nc|ENSG00000179873|P59045-3|NLRP11;nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11	NLRP11|p.N817Ifs*7|1|0.4|ENSG00000179873|chr19:55792364-55792364|T/-|frameshift_variant	NLRP11|p.N817Ifs*7|1|0.4|ENSG00000179873|chr19:55792364-55792364|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	456.7286376953125	2	456.726718	911.438883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.176	1	33.79	33.29	34.29	-0.38558								0	0	0	0.8217	1	12469	12469		20.871	2.7362	1				34341	5570	21748	21867	33060	33060					-0.02037879402234921
TSFLAFQLL	9	Unmodified	_TSFLAFQLL_					0	0	0		nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3;ENST00000521835.1_1_8:142202446-142202728:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	MSMS	HCT116MG_D190212_S4	4	520.2970581054688	2	520.294768	1038.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.83	1	30.466	29.966	30.966	-0.36416								0	0	0	0.76913	1	11164	11164		3.9444	0	1				34342	2003	21749	21868	33061	33061					0.057238151084447964
TSFLERIER	9	Unmodified	_TSFLERIER_					0	0	0			REV__ENSG00000122965|ENST00000261741|RBM19	REV__ENSG00000122965|ENST00000261741|RBM19	MULTI-MSMS	HCT116MG_D190212_S3	3	384.2117919921875	3	384.212017	1149.61422	-0.060236	-2.3143E-05	-0.066441	-2.5527E-05	-0.12668	-4.8671E-05	384.21204261748795	15.264	0.31209	15.347	15.194	15.506	0.083271					8	5	2	0	0	0	0.73977	1	5025	5025		2.4985	0	1	763080	+		34343	11751	21750	21869	33062	33062					0.04539915391978866
TSFLFHTLCAI	11	Unmodified	_TSFLFHTLCAI_					0	0	0		ENST00000335712.10_2_2:60686003-60686195:-|nuORF	ENST00000335712.10_2_2:60686003-60686195:-|nuORF	ENST00000335712.10_2_2:60686003-60686195:-|nuORF	MSMS	HCT116MG_D190212_S3	3	627.2645263671875	2	626.823366	1251.63218	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.244	1	23.204	22.704	23.704	-0.03968								0	0	0	0.92235	1	8197	8197		17.113	0.96379	1				34344	7189	21751	21870	33063	33063					0.016429143224968357
TSFLGRRLP	9	Unmodified	_TSFLGRRLP_					0	0	0		ENST00000358912.4_1_2:64323398-64323587:-|nuORF	ENST00000358912.4_1_2:64323398-64323587:-|nuORF	ENST00000358912.4_1_2:64323398-64323587:-|nuORF	MSMS	HCT116MG_D190212_S4	4	523.80810546875	2	523.808908	1045.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.159	1	33.774	33.274	34.274	-0.38558								0	0	0	0.768	1	12462	12462		7.9102	0	1				34345	7327	21752	21871	33064	33064					0.08228557808365622
TSFSGLIYLP	10	Unmodified	_TSFSGLIYLP_					0	0	0		ENSG00000131951|ENST00000570145|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	MSMS	HCT116MG_D190212_S4	4	549.2955322265625	2	549.297507	1096.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.2	1	34.814	34.314	35.314	-0.38606								0	0	0	0.92272	1	12883	12883		10.824	5.0921	1				34346	3163	21753	21872	33065	33065					0.03603493900232024
TSFTPECPE	9	Unmodified	_TSFTPECPE_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	HCT116MG_D190212_S4	4	506.2131652832031	2	505.710408	1009.40626	0.16912	8.5528E-05	0.27357	0.00013835	0.4427	0.00022388	506.21283271145876	34.751	0.25498	34.365	34.287	34.542	-0.38606					6	4	2	0	0	0	0.60612	1	12734	12734		10.824	0.75	1	2032700			34347	6619	21754	21873	33066	33066					-0.09806454587408098
TSFTPECPE	9	Unmodified	_TSFTPECPE_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	505.710408	1009.40626	0.070665	3.5736E-05	0.53395	0.00027003	0.60462	0.00030576	506.2127138778721	34.733	0.15614	34.436	34.336	34.492	-0.29707	0.035284	0.00010287	NaN	10.824	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3685100			34348	6619	21754	21873							-0.09806454587408098
TSFVAATWE	9	Unmodified	_TSFVAATWE_					0	0	0		ENST00000489585.5_1_1:236046543-236046774:-|nuORF	ENST00000489585.5_1_1:236046543-236046774:-|nuORF	ENST00000489585.5_1_1:236046543-236046774:-|nuORF	MSMS	HCT116MG_D190212_S3	3	506.2407531738281	2	506.242732	1010.47091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.002	1	23.94	23.44	24.44	-0.061449								0	0	0	0.76718	1	8502	8502		10.824	1.4765	1				34349	8326	21755	21874	33067	33067					-0.033905117191011414
TSFYFSYLYQR	11	Unmodified	_TSFYFSYLYQR_					0	0	0			REV__nc|ENSG00000132259|Q8IV77-2|CNGA4	REV__nc|ENSG00000132259|Q8IV77-2|CNGA4	MSMS	HCT116MG_D190212_S3	3	737.8515625	2	737.853709	1473.69287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.246	1	37.944	37.444	38.444	-0.30137								0	0	0	0.95636	1	14161	14161		2.9952	1.5133	1		+		34350	11984	21756	21875	33068	33068					-0.0250327709359226
TSGALIVKA	9	Unmodified	_TSGALIVKA_					0	0	0			REV__ENST00000512095.5_1_4:39217537-39276579:+|nuORF	REV__ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MSMS	HCT116MG_D190212_S2	2	430.7316589355469	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.278	1	29.993	29.493	30.493	-0.28453								0	0	0	0.76575	1	11125	11125		15.847	0	1		+		34351	12764	21757	21876	33069	33069					0.08254972902841473
TSGEKYLHY	9	Unmodified	_TSGEKYLHY_					0	0	0			REV__ENST00000444199.1_1_19:55208384-55209490:+|nuORF	REV__ENST00000444199.1_1_19:55208384-55209490:+|nuORF	MSMS	HCT116MG_D190212_S4	4	549.265869140625	2	549.266739	1096.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.489	1	15.327	14.827	15.827	-0.16173								0	0	0	0.76818	1	4997	4997		7.2892	0	1		+		34352	15662	21758	21877	33070	33070					-0.025474377990576613
TSGESESDDSE	11	Unmodified	_TSGESESDDSE_					0	0	0		ENST00000479037.5_1_2:230672327-230744801:-|nuORF;TRIP12|p.N880Kfs*36|1|0.21|ENSG00000153827|chr2:229804013-229804014|-/T|frameshift_variant;TRIP12|p.S1195Lfs*24|6|0.27|ENSG00000153827|chr2:229796599-229796599|A/-|frameshift_variant;TRIP12|p.H1434Afs*2|1|0.16|ENSG00000153827|chr2:229791143-229791144|-/T|frameshift_variant;TRIP12|p.Y1552Lfs*6|1|0.12|ENSG00000153827|chr2:229787620-229787621|-/A|frameshift_variant;nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	ENST00000479037.5_1_2:230672327-230744801:-|nuORF	ENST00000479037.5_1_2:230672327-230744801:-|nuORF	MSMS	HCT116MG_D190212_S2	2	571.7431030273438	2	571.702019	1141.38949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.002	1	19.627	19.127	20.127	-0.37503								0	0	0	0.95636	1	6968	6968		2.9952	0.93549	1				34353	4196	21759	21878	33071	33071					-0.1755532873030461
TSGGFAPQ	8	Unmodified	_TSGGFAPQ_					0	0	0			REV__nc|ENSG00000272391|A8CG34|POM121C	REV__nc|ENSG00000272391|A8CG34|POM121C	MULTI-MSMS	HCT116MG_D190212_S3	3	764.358154296875	1	764.357345	763.350068	0.54795	0.00041883	0.14004	0.00010704	0.688	0.00052588	764.3573197227754	19.626	1.0932	19.686	18.918	20.011	0.05983					34	20	2	0	0	0	0.55794	1	6833	6833		36.044	1.9418	1	8721300	+		34354	17317	21760	21879	33072	33072					-0.04107294641914905
TSGNAFHEQP	10	Unmodified	_TSGNAFHEQP_					0	0	0		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	MSMS	HCT116MG_D190212_S3	3	544.2433471679688	2	544.243795	1086.47304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.923	1	23.862	23.362	24.362	-0.061449								0	0	0	0.84701	1	8471	8471		22.736	5.794	1				34355	2085	21761	21880	33073	33073					-0.06674082981294305
TSGPGSRISS	10	Unmodified	_TSGPGSRISS_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	474.74127197265625	2	474.740888	947.467223	0.15017	7.1294E-05	0.26209	0.00012442	0.41226	0.00019572	474.7409487324449	18.538	0.46895	18.538	18.193	18.662	0					19	8	3	0	0	0	0.035798	1	6339	6339		97.741	14.312	1	9994800		+	34356	558	21762	21881	33074	33074					-0.00861181492950891
TSGPGSRISSS	11	Unmodified	_TSGPGSRISSS_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2571411132812	2	518.256902	1034.49925	0.39468	0.00020454	-0.099073	-5.1345E-05	0.29561	0.0001532	518.2568916998863	18.334	0.57339	18.334	17.933	18.506	0					20	10	3	0	0	0	0.03114	1	6294	6294		103.69	30.494	1	6320100		+	34357	558	21763	21882	33075	33075					-0.016618138098010604
TSGPPLTM	8	Oxidation (M)	_TSGPPLTM(Oxidation (M))_		TSGPPLTM(1)		TSGPPLTM(89)	0	0	1		ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	MULTI-MSMS	HCT116MG_D190212_S2	2	819.39306640625	1	819.391681	818.384405	1.044	0.00085544	-0.2483	-0.00020346	0.79568	0.00065198	819.3914901575974	34.273	0.4145	34.097	33.967	34.382	-0.17512					14	7	2	0	0	0	0.12463	1	12759	12759		89.427	22.391	1	37226000			34358	6150	21764	21883	33076	33076		131			-0.03205214545300805
TSGPPLTM	8	Unmodified	_TSGPPLTM_					0	0	0		ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	MULTI-MSMS	HCT116MG_D190212_S2	2	803.3976440429688	1	803.396767	802.38949	1.2531	0.0010067	-0.23219	-0.00018654	1.0209	0.00082018	803.3966316618503	46.659	0.51368	46.547	46.317	46.831	-0.11121					23	9	4	0	0	0	0.12463	1	17758	17758		89.427	11.442	1	297730000			34359	6150	21764	21884	33077	33077					-0.019609106826919742
TSGPPLTM	8	Unmodified	_TSGPPLTM_					0	0	0		ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	MULTI-MSMS	HCT116MG_D190212_S3	3	803.3981323242188	1	803.396767	802.38949	0.91606	0.00073596	0.19659	0.00015794	1.1127	0.0008939	803.396954542724	46.882	0.26069	46.568	46.385	46.646	-0.31405					6	4	2	0	0	0	0.31873	1	17608	17608		57.471	7.8024	1	3906600			34360	6150	21764	21884	33078	33078					-0.019609106826919742
TSGPRAFS	8	Unmodified	_TSGPRAFS_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	411.7087707519531	2	411.70886	821.403166	-0.012695	-5.2264E-06	-0.23108	-9.5137E-05	-0.24377	-0.00010036	411.70874553298205	23.915	0.2613	23.915	23.784	24.045	0					6	4	2	0	0	0	0.44794	1	8565	8565		45.74	9.6129	1	5272900		+	34361	558	21765	21885	33079	33079					-0.014679168592351743
TSGVVRLH	8	Unmodified	_TSGVVRLH_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	HCT116MG_D190212_S1	1	434.7534484863281	2	434.753601	867.49265	0.039993	1.7387E-05	0.049985	2.1731E-05	0.089978	3.9118E-05	434.75345426207537	15.718	0.20815	15.718	15.588	15.796	0					8	3	3	0	0	0	0.82475	1	5265	5265		8.5933	0.68312	1	7211200			34362	1876	21766	21886	33080	33080					0.053603378201387386
TSGYGQSSY	9	Unmodified	_TSGYGQSSY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487045.6_1_16:31191511-31194161:+|nuORF;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S2	2	949.390380859375	1	949.389767	948.38249	0.73589	0.00069865	-0.010628	-1.009E-05	0.72526	0.00068856	949.38965419806	24.594	0.52044	24.214	24.03	24.551	-0.38003					22	9	4	0	0	0	0.0035381	1	8800	8800		171.09	101.98	1	152750000			34363	1526	21767	21887	33081	33081					-0.09376552029573304
TSGYGQSSY	9	Unmodified	_TSGYGQSSY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487045.6_1_16:31191511-31194161:+|nuORF;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MSMS	HCT116MG_D190212_S2	2	475.1988525390625	2	475.198522	948.38249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.689	1	24.309	23.809	24.809	-0.38003								0	0	0	0.76603	1	8858	8858		14.838	4.7643	1				34364	1526	21767	21887	33082	33082					-0.09376552029573304
TSGYGQSSY	9	Unmodified	_TSGYGQSSY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487045.6_1_16:31191511-31194161:+|nuORF;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S3	3	949.390380859375	1	949.389767	948.38249	0.69601	0.00066078	0.36212	0.00034379	1.0581	0.0010046	949.3898060591771	24.351	0.36413	24.267	24.133	24.497	-0.083694					13	6	3	0	0	0	0.0023719	1	8647	8647		185.05	103.16	1	13903000			34365	1526	21767	21887	33083	33083					-0.09376552029573304
TSGYMEGYYTF	11	Unmodified	_TSGYMEGYYTF_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MSMS	HCT116MG_D190212_S4	4	659.7675170898438	2	659.768454	1317.52235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.041	1	15.877	15.377	16.377	-0.16364								0	0	0	0.95113	1	5220	5220		5.7319	0.43497	1				34366	2247	21768	21888	33084	33084					-0.12370555807365236
TSHDWRLR	8	Unmodified	_TSHDWRLR_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.2990112304688	2	535.778139	1069.54173	0.4821	0.0002583	-0.90178	-0.00048316	-0.41968	-0.00022486	535.7778393115723	27.728	0.20613	27.386	27.243	27.449	-0.34201					5	3	2	0	0	0	0.31097	1	10040	10040		3.9444	3.9444	1	7931500			34367	1138	21769	21889	33085	33085					0.009736261090665721
TSHDWRLR	8	Unmodified	_TSHDWRLR_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	535.778139	1069.54173	0.65365	0.00035021	-2.7922	-0.001496	-2.1385	-0.0011458	535.7759429571611	27.627	0.20792	27.439	27.361	27.569	-0.18847	0.026362	-0.0019159	NaN	3.9444	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3851300			34368	1138	21769	21889							0.009736261090665721
TSHIIPGIEY	10	Unmodified	_TSHIIPGIEY_					0	0	0		tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1	tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1	tr|U7SQK3|U7SQK3_FUSNUSirohydrochlorincobaltochelataseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01667PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	565.2968139648438	2	565.298039	1128.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.439	1	33.246	32.746	33.746	-0.19297								0	0	0	0.90892	1	12408	12408		13.906	0	1				34369	18389	21770	21890	33086	33086					0.02237708269126415
TSHIYDNISPH	11	Unmodified	_TSHIYDNISPH_					0	0	0			REV__nc|ENSG00000135439|Q99490-2|AGAP2	REV__nc|ENSG00000135439|Q99490-2|AGAP2	MSMS	HCT116MG_D190212_S4	4	642.3023681640625	2	642.304384	1282.59421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.289	1	16.125	15.625	16.625	-0.16364								0	0	0	0.95581	1	5320	5320		3.2813	0.28607	1		+		34370	12090	21771	21891	33087	33087					-0.03577880338639261
TSHLSKDLP	9	Unmodified	_TSHLSKDLP_					0	0	0		GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant;ENSG00000178295|ENST00000381254|GEN1	GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant	GEN1|p.S753Rfs*9|1|0.09|ENSG00000178295|chr2:17781467-17781468|-/AAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	500.25836181640625	2	499.269281	996.52401	0.54168	0.00027044	-0.28676	-0.00014317	0.25491	0.00012727	499.2691059080757	26.318	0.6773	26.169	25.838	26.515	-0.14924					29	12	3	0	0	0	0.39063	1	9311	9311		23.148	7.3012	1	10147000			34371	5495	21772	21892	33088	33088					0.025608660635725755
TSHLYSGNYG	10	Unmodified	_TSHLYSGNYG_					0	0	0			REV__ENSG00000182263|ENST00000333129|FIGN	REV__ENSG00000182263|ENST00000333129|FIGN	MSMS	HCT116MG_D190212_S2	2	549.7446899414062	2	549.74617	1097.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.124	1	14.797	14.297	15.297	-0.32684								0	0	0	0.91279	1	5002	5002		13.042	4.2971	1		+		34372	13712	21773	21893	33089	33089					-0.0670519883851739
TSHQCPEDRY	10	Unmodified	_TSHQCPEDRY_					0	0	0		ADAM21|p.L684Cfs*3|4|0.25|ENSG00000139985|chr14:70459544-70459544|T/-|frameshift_variant;ENSG00000139985|ENST00000603540|ADAM21	ADAM21|p.L684Cfs*3|4|0.25|ENSG00000139985|chr14:70459544-70459544|T/-|frameshift_variant	ADAM21|p.L684Cfs*3|4|0.25|ENSG00000139985|chr14:70459544-70459544|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	618.259033203125	2	618.259119	1234.50368	0.21122	0.00013059	-0.3057	-0.000189	-0.094481	-5.8414E-05	618.2589789879826	29.977	0.25804	29.693	29.564	29.822	-0.28453					6	4	2	0	0	0	0.28886	1	11043	11043		24.991	12.75	1	11277000			34373	38	21774	21894	33090	33090					-0.10418672658556716
TSHTGECPP	9	Unmodified	_TSHTGECPP_					0	0	0		ENST00000581108.5_1_17:80207265-80210400:-|nuORF	ENST00000581108.5_1_17:80207265-80210400:-|nuORF	ENST00000581108.5_1_17:80207265-80210400:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	464.69500732421875	2	464.695092	927.375631	0.18759	8.7174E-05	0.61927	0.00028777	0.80686	0.00037495	464.6950722051032	20.608	0.26527	20.229	20.076	20.342	-0.37949					6	4	2	0	0	0	0.64512	1	7229	7229		8.5933	0	1	4999800			34374	8954	21775	21895	33091	33091					-0.09096188181786147
TSHTSHASH	9	Unmodified	_TSHTSHASH_					0	0	0			REV__DHX15|p.T231Pfs*6|1|0.27|ENSG00000109606|chr4:24570664-24570664|T/-|frameshift_variant	REV__DHX15|p.T231Pfs*6|1|0.27|ENSG00000109606|chr4:24570664-24570664|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	482.7239074707031	2	482.715205	963.415856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.642	1	18.279	17.779	18.779	-0.36325								0	0	0	0.53872	1	6419	6419		26.884	2.2098	1		+		34375	10361	21776	21896	33092	33092					-0.06731505466996168
TSHVSLSRH	9	Unmodified	_TSHVSLSRH_					0	0	0		ZNF532|p.T1272Lfs*8|1|0.46|ENSG00000074657|chr18:58984370-58984370|A/-|frameshift_variant;ENSG00000074657|ENST00000591808|ZNF532;ENST00000518830.2_1_8:120492577-120492979:-|nuORF;ENST00000590442.1_1_18:56648660-56651695:+|nuORF;ENST00000592249.5_1_18:56620439-56651695:+|nuORF	ZNF532|p.T1272Lfs*8|1|0.46|ENSG00000074657|chr18:58984370-58984370|A/-|frameshift_variant	ZNF532|p.T1272Lfs*8|1|0.46|ENSG00000074657|chr18:58984370-58984370|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	512.2709350585938	2	512.270147	1022.52574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.187	1	31.909	31.409	32.409	-0.27841								0	0	0	0.76834	1	11788	11788		6.7232	0.51738	1				34376	1300	21777	21897	33093	33093					0.01537919872191651
TSHYPFPELF	10	Unmodified	_TSHYPFPELF_					0	0	0		L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|24|2|anti-sense	L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|24|2|anti-sense	L1MB4_dup8349|chr19:41722393-41722883:-|1.915539018183746|0.0855613051879158|4.48|472.0|24|2|anti-sense	MSMS	HCT116MG_D190212_S4	4	619.2977905273438	2	619.298039	1236.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.437	1	16.273	15.773	16.773	-0.16364								0	0	0	0.95507	1	5380	5380		3.5965	0.31518	1				34377	9276	21778	21898	33094	33094					-0.027302917308816177
TSIGGYKR	8	Unmodified	_TSIGGYKR_					0	0	0			REV__nc|ENSG00000182872|P98175-4|RBM10	REV__nc|ENSG00000182872|P98175-4|RBM10	MULTI-MSMS	HCT116MG_D190212_S3	3	441.2457580566406	2	441.245609	880.476666	-0.1729	-7.6291E-05	0.50944	0.00022479	0.33654	0.0001485	441.2457365674889	36.29	0.46812	35.99	35.729	36.198	-0.30042					11	8	2	0	0	0	0.71077	1	13429	13429		21.747	0	1	3272200	+		34378	13733	21779	21899	33095	33095					0.031646315832290384
TSIGGYKR	8	Unmodified	_TSIGGYKR_					0	0	0			REV__nc|ENSG00000182872|P98175-4|RBM10	REV__nc|ENSG00000182872|P98175-4|RBM10	MULTI-MSMS	HCT116MG_D190212_S4	4	441.2455139160156	2	441.245609	880.476666	0.40035	0.00017665	-0.032871	-1.4504E-05	0.36747	0.00016215	441.2454186392732	36.314	0.30775	35.929	35.818	36.126	-0.38558					8	5	2	0	0	0	0.6854	1	13325	13325		24.674	0	1	1935900	+		34379	13733	21779	21899	33096	33096					0.031646315832290384
TSIGGYKR	8	Unmodified	_TSIGGYKR_					0	0	0			REV__nc|ENSG00000182872|P98175-4|RBM10	REV__nc|ENSG00000182872|P98175-4|RBM10	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	441.245609	880.476666	-0.1729	-7.6291E-05	0.50944	0.00022479	0.33654	0.0001485	441.2457365674889	36.29	0.46812	35.99	35.729	36.198	-0.30042	0.030608	0.00017274	NaN	24.674	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3272200	+		34380	13733	21779	21899							0.031646315832290384
TSIGGYKR	8	Unmodified	_TSIGGYKR_					0	0	0			REV__nc|ENSG00000182872|P98175-4|RBM10	REV__nc|ENSG00000182872|P98175-4|RBM10	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	441.245609	880.476666	0.40035	0.00017665	-0.032871	-1.4504E-05	0.36747	0.00016215	441.2454186392732	36.314	0.30775	35.929	35.818	36.126	-0.38558	-0.030608	-0.00030584	NaN	24.674	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1935900	+		34381	13733	21779	21899							0.031646315832290384
TSIISTLTN	9	Unmodified	_TSIISTLTN_					0	0	0		HNF1B|p.S539I|1|0.38|ENSG00000275410|chr17:37699113-37699113|C/A|missense_variant	HNF1B|p.S539I|1|0.38|ENSG00000275410|chr17:37699113-37699113|C/A|missense_variant	HNF1B|p.S539I|1|0.38|ENSG00000275410|chr17:37699113-37699113|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	475.2654724121094	2	475.263665	948.512776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.978	1	34.592	34.092	35.092	-0.38606								0	0	0	0.76834	1	12793	12793		6.7232	0.51738	1				34382	9225	21780	21900	33097	33097					0.03646043969422408
TSIQNIALYQR	11	Unmodified	_TSIQNIALYQR_					0	0	0			REV__ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant	REV__ITPR2|p.N858Kfs*2|1|0.38|ENSG00000123104|chr12:26655723-26655724|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	436.2418518066406	3	436.241976	1305.7041	-0.086778	-3.7856E-05	0.14348	6.259E-05	0.056699	2.4734E-05	436.24194916468656	10.853	0.40893	10.579	10.385	10.794	-0.27365					23	13	2	0	0	0	0.74191	1	3444	3444		2.8433	0.4085	1	1382700	+		34383	11757	21781	21901	33098	33098					0.06347545000539867
TSIRDKAP	8	Unmodified	_TSIRDKAP_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	HCT116MG_D190212_S2	2	444.2130432128906	2	444.250892	886.48723	-0.17443	-7.7493E-05	0.53222	0.00023644	0.35778	0.00015895	444.25107779067025	30.132	0.2064	29.848	29.667	29.873	-0.28453					5	3	2	0	0	0	0.31111	1	10997	10997		10.183	1.5901	1	25447000			34384	5220	21782	21902	33099	33099					0.03944614237661881
TSIRELVQDL	10	Unmodified	_TSIRELVQDL_					0	0	0			REV__ENST00000490362.1_1_2:217526523-217526805:+|nuORF	REV__ENST00000490362.1_1_2:217526523-217526805:+|nuORF	MSMS	HCT116MG_D190212_S4	4	587.3280639648438	2	587.327328	1172.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.216	1	36.832	36.332	37.332	-0.3839								0	0	0	0.93202	1	13649	13649		8.7454	0	1		+		34385	11546	21783	21903	33100	33100					0.06068764843621466
TSISAATPAA	10	Unmodified	_TSISAATPAA_					0	0	0		ENSG00000171199|ENST00000399575|OPRPN	ENSG00000171199|ENST00000399575|OPRPN	ENSG00000171199|ENST00000399575|OPRPN	MULTI-MSMS	HCT116MG_D190212_S1	1	445.23480224609375	2	445.234907	888.455261	0.042568	1.8953E-05	0.30578	0.00013614	0.34835	0.0001551	445.2348297615633	27.152	0.26037	27.152	27.022	27.282	0					7	4	2	0	0	0	0.48679	1	9868	9868		36.127	8.4982	1	8763100			34386	5179	21784	21904	33101	33101					0.006572017638518446
TSISAATPAA	10	Unmodified	_TSISAATPAA_					0	0	0		ENSG00000171199|ENST00000399575|OPRPN	ENSG00000171199|ENST00000399575|OPRPN	ENSG00000171199|ENST00000399575|OPRPN	MULTI-MSMS	HCT116MG_D190212_S4	4	445.2347717285156	2	445.234907	888.455261	0.33109	0.00014741	-0.12502	-5.5663E-05	0.20607	9.175E-05	445.23469973214185	27.651	0.35396	27.33	27.148	27.502	-0.32157					12	6	3	0	0	0	0.37629	1	9911	9911		43.858	0.085901	1	6163700			34387	5179	21784	21904	33102	33102					0.006572017638518446
TSKKIISI	8	Unmodified	_TSKKIISI_					0	0	0		ENST00000527147.1_1_11:100537243-100537690:+|nuORF	ENST00000527147.1_1_11:100537243-100537690:+|nuORF	ENST00000527147.1_1_11:100537243-100537690:+|nuORF	MSMS	HCT116MG_D190212_S4	4	445.2908020019531	2	445.289485	888.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.738	1	57.443	56.943	57.943	-0.29465								0	0	0	0.8837	1	21680	21680		2.0598	0	1				34388	8593	21785	21905	33103	33103					0.11567832453999927
TSKKIVIT	8	Unmodified	_TSKKIVIT_					0	0	0		ENST00000448165.1_1_10:81113430-81113595:+|nuORF;ENSG00000108179|ENST00000225174|PPIF	ENST00000448165.1_1_10:81113430-81113595:+|nuORF	ENST00000448165.1_1_10:81113430-81113595:+|nuORF	MSMS	HCT116MG_D190212_S4	4	445.28802490234375	2	445.289485	888.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.088	1	48.723	48.223	49.223	-0.365								0	0	0	0.8837	1	18196	18196		0.69038	0	1				34389	2150	21786	21906	33104	33104					0.11567832453977189
TSKLPLKKEAI	11	Unmodified	_TSKLPLKKEAI_					0	0	0		ENSG00000131951|ENST00000570145|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;nc|ENSG00000131951|Q6ZRR7-2|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	MSMS	HCT116MG_D190212_S4	4	614.3876953125	2	614.387188	1226.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.75	1	43.376	42.876	43.876	-0.37433								0	0	0	0.94012	1	16093	16093		11.495	0	1				34390	3163	21787	21907	33105	33105					0.15551378188183662
TSKNFKYEK	9	Unmodified	_TSKNFKYEK_					0	0	0		tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1	tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1	tr|U7T3H9|U7T3H9_FUSNUFAD:proteinFMNtransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00668PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	572.801513671875	2	572.803488	1143.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.129	1	27.929	27.429	28.429	-0.19972								0	0	0	0.67173	1	10167	10167		20.454	0.039092	1				34391	18599	21788	21908	33106	33106					0.02637110643422602
TSKQAENGQP	10	Unmodified	_TSKQAENGQP_					0	0	0		ENST00000479099.2_1_1:173907861-173910545:-|nuORF;nc|ENSG00000135870|Q5TC82-2|RC3H1;ENSG00000135870|ENST00000367696|RC3H1	ENST00000479099.2_1_1:173907861-173910545:-|nuORF	ENST00000479099.2_1_1:173907861-173910545:-|nuORF	MSMS	HCT116MG_D190212_S4	4	530.256591796875	2	530.256902	1058.49925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.699	1	19.505	19.005	20.005	-0.19367								0	0	0	0.92607	1	6698	6698		10.074	0	1				34392	3378	21789	21909	33107	33107					-0.027658138098104246
TSKQYKRIERL	11	Unmodified	_TSKQYKRIERL_					0	0	0			REV__ENSG00000269466|ENST00000598383|H3Y1	REV__ENSG00000269466|ENST00000598383|H3Y1	MSMS	HCT116MG_D190212_S3	3	711.4136352539062	2	711.4148	1420.81505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.408	1	39.106	38.606	39.606	-0.30137								0	0	0	0.95954	1	14628	14628		1.3295	0	1		+		34393	14433	21790	21910	33108	33108					0.12147184708624081
TSKVLLADP	9	Unmodified	_TSKVLLADP_					0	0	0			REV__ENSG00000135625|ENST00000436467|EGR4	REV__ENSG00000135625|ENST00000436467|EGR4	MSMS	HCT116MG_D190212_S3	3	472.275146484375	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.781	1	29.544	29.044	30.044	-0.23655								0	0	0	0.76694	1	10830	10830		11.64	2.2929	1		+		34394	12102	21791	21911	33109	33109					0.06502938211701803
TSLAASLAGP	10	Unmodified	_TSLAASLAGP_					0	0	0			REV__ENST00000342494.7_1_12:109915642-109915795:+|nuORF	REV__ENST00000342494.7_1_12:109915642-109915795:+|nuORF	MSMS	HCT116MG_D190212_S4	4	444.2440490722656	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.657	1	23.409	22.909	23.909	-0.24775								0	0	0	0.86471	1	8294	8294		20.454	2.3073	1		+		34395	14982	21792	21912	33110	33110					0.028217921435157223
TSLAEPGSW	9	Unmodified	_TSLAEPGSW_					0	0	0		ENST00000507419.5_1_5:133984116-133984272:-|nuORF	ENST00000507419.5_1_5:133984116-133984272:-|nuORF	ENST00000507419.5_1_5:133984116-133984272:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	947.4469604492188	1	947.446888	946.439611	0.58857	0.00055764	0.11218	0.00010628	0.70075	0.00066392	947.4468750307625	35.143	0.95488	34.757	34.087	35.042	-0.38606					30	18	2	0	0	0	0.13706	2	12735	12735;12968		50.855	3.9131	1	6675900			34396	8469	21793	21913	33111;33112	33111					-0.0357508475318582
TSLCADAF	8	Unmodified	_TSLCADAF_					0	0	0		ENST00000449307.3_1_7:65996856-66006370:-|nuORF	ENST00000449307.3_1_7:65996856-66006370:-|nuORF	ENST00000449307.3_1_7:65996856-66006370:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	827.3627319335938	1	827.360381	826.353105	0.71995	0.00059566	0.93921	0.00077707	1.6592	0.0013727	827.3610901124398	50.49	0.31142	50.131	49.949	50.261	-0.35878					8	5	2	0	0	0	0.66848	1	18768	18768		26.341	5.4701	1	6262100			34397	7974	21794	21914	33113	33113					-0.06701787579413576
TSLCADAF	8	Unmodified	_TSLCADAF_					0	0	0		ENST00000449307.3_1_7:65996856-66006370:-|nuORF	ENST00000449307.3_1_7:65996856-66006370:-|nuORF	ENST00000449307.3_1_7:65996856-66006370:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	827.360381	826.353105	0.7935	0.00065651	1.5819	0.0013088	2.3754	0.0019653	827.361812245931	50.413	0.31327	50.097	49.914	50.228	-0.31525	-0.016253	0.00053308	NaN	26.341	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8051700			34398	7974	21794	21914							-0.06701787579413576
TSLCAHQPP	9	Unmodified	_TSLCAHQPP_					0	0	0			REV__ENST00000529778.5_1_11:6422476-6423430:-|nuORF	REV__ENST00000529778.5_1_11:6422476-6423430:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	477.7334899902344	2	477.229102	952.443651	-0.0066082	-3.1536E-06	0.043823	2.0914E-05	0.037215	1.776E-05	477.2291360789442	34.711	0.3119	34.414	34.284	34.596	-0.29707					6	5	2	0	0	0	0.25445	1	12737	12737		2.0598	0	1	8429900	+		34399	16300	21795	21915	33114	33114					-0.03447318531129895
TSLESFTNAP	10	Unmodified	_TSLESFTNAP_					0	0	0		nc|ENSG00000091986|Q76M96-2|CCDC80;ENSG00000091986|ENST00000206423|CCDC80	nc|ENSG00000091986|Q76M96-2|CCDC80	nc|ENSG00000091986|Q76M96-2|CCDC80	MSMS	HCT116MG_D190212_S2	2	533.7662353515625	2	533.756204	1065.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.319	1	18.95	18.45	19.45	-0.3695								0	0	0	0.87399	1	6692	6692		19.257	5.3509	1				34400	1569	21796	21916	33115	33115					-0.03227447898552782
TSLGKKDPQ	9	Unmodified	_TSLGKKDPQ_					0	0	0			REV__ENST00000512847.1_1_4:113347672-113349016:+|nuORF	REV__ENST00000512847.1_1_4:113347672-113349016:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	487.2691650390625	2	487.269281	972.52401	-0.070241	-3.4226E-05	0.10368	5.052E-05	0.033439	1.6294E-05	487.2693692466673	27.069	0.20802	26.757	26.639	26.847	-0.3114					8	3	3	0	0	0	0.43775	1	9703	9703		20.454	5.6154	1	2024800	+		34401	9917	21797	21917	33116	33116					0.03664866063559202
TSLGYCIVSNP	11	Unmodified	_TSLGYCIVSNP_					0	0	0		tr|U7SV38|U7SV38_FUSNUPhageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01117PE=4SV=1	tr|U7SV38|U7SV38_FUSNUPhageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01117PE=4SV=1	tr|U7SV38|U7SV38_FUSNUPhageproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01117PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	577.2799072265625	2	577.281531	1152.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.462	1	21.481	20.981	21.981	0.018446								0	0	0	0.81249	1	7480	7480		31.268	2.7738	1				34402	18487	21798	21918	33117	33117					-0.021662418452024212
TSLHEQAAP	9	Unmodified	_TSLHEQAAP_					0	0	0		ENST00000308191.10_1_6:136172954-136173146:+|nuORF	ENST00000308191.10_1_6:136172954-136173146:+|nuORF	ENST00000308191.10_1_6:136172954-136173146:+|nuORF	MSMS	HCT116MG_D190212_S4	4	477.2379455566406	2	477.237981	952.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.163	1	18.976	18.476	19.476	-0.18674								0	0	0	0.3894	1	6481	6481		34.102	0	1				34403	7037	21799	21919	33118	33118					-0.01672280004629556
TSLHLDISI	9	Unmodified	_TSLHLDISI_					0	0	0			REV__ENST00000426229.1_2_1:202920095-202923414:-|nuORF	REV__ENST00000426229.1_2_1:202920095-202923414:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	499.8747253417969	2	499.779482	997.544411	0.31935	0.0001596	-0.13522	-6.758E-05	0.18413	9.2024E-05	499.77945393049094	32.302	0.41632	32.072	31.942	32.359	-0.23009					11	7	2	0	0	0	0.2853	1	12050	12050		32.305	15.363	1	15073000	+		34404	15551	21800	21920	33119	33119					0.04554036723379795
TSLIFLMSLL	10	Unmodified	_TSLIFLMSLL_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ABCA5|p.F1078Lfs*6|2|0.34|ENSG00000154265|chr17:69264816-69264816|A/-|frameshift_variant;ABCA5|p.L1530Wfs*5|1|0.25|ENSG00000154265|chr17:69250568-69250568|A/-|frameshift_variant;ENSG00000154265|ENST00000392676|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	MULTI-MSMS	HCT116MG_D190212_S1	1	569.8338623046875	2	569.333036	1136.65152	0.2593	0.00014763	0.043223	2.4608E-05	0.30252	0.00017224	569.3329323298996	49.091	2.6266	49.091	47.742	50.368	0					87	50	3	0	0	0	0.88076	1	19177	19177		3.2813	0	1	57642000			34405	4	21801	21921	33120	33120					0.08865870613385596
TSLLALKLL	9	Unmodified	_TSLLALKLL_					0	0	0		ENST00000578217.1_1_17:26731487-26732732:-|nuORF;ENST00000582590.1_1_17:26731487-26733159:-|nuORF;nc|ENSG00000076351|Q96NT5-2|SLC46A1;ENSG00000076351|ENST00000612814|SLC46A1	ENST00000578217.1_1_17:26731487-26732732:-|nuORF	ENST00000578217.1_1_17:26731487-26732732:-|nuORF	MSMS	HCT116MG_D190212_S3	3	486.32745361328125	2	486.328611	970.642668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.259	1	29.037	28.537	29.537	-0.22195								0	0	0	0.76902	1	10622	10622		4.3292	1.44	1				34406	1334	21802	21922	33121	33121					0.15617265039236372
TSLLAVTLGYI	11	Unmodified	_TSLLAVTLGYI_					0	0	0			REV__nc|ENSG00000176748|P0C646|OR52Z1P	REV__nc|ENSG00000176748|P0C646|OR52Z1P	MSMS	HCT116MG_D190212_S2	2	575.8385620117188	2	575.839539	1149.66453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.668	1	27.326	26.826	27.826	-0.34201								0	0	0	0.81249	1	10059	10059		31.268	3.6395	1		+		34407	17225	21803	21923	33122	33122					0.09568024997156499
TSLLLYVKT	9	Unmodified	_TSLLLYVKT_					0	0	0		ENST00000432045.6_1_7:130565395-130565941:-|nuORF	ENST00000432045.6_1_7:130565395-130565941:-|nuORF	ENST00000432045.6_1_7:130565395-130565941:-|nuORF	MSMS	HCT116MG_D190212_S3	3	519.314208984375	2	519.3157	1036.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.133	1	37.831	37.331	38.331	-0.30137								0	0	0	0.76902	1	14115	14115		4.3292	0.38484	1				34408	7861	21804	21924	33123	33123					0.10000370796956304
TSLLRLRMLI	10	Unmodified	_TSLLRLRMLI_					0	0	0			REV__ENST00000533637.5_1_11:59540699-59556358:+|nuORF	REV__ENST00000533637.5_1_11:59540699-59556358:+|nuORF	MSMS	HCT116MG_D190212_S1	1	608.3855590820312	2	608.383926	1214.7533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.611	1	47.611	47.111	48.111	0								0	0	0	0.96377	1	18095	18095		1.6526	0.17072	1		+		34409	16328	21805	21925	33124	33124					0.15451161755822795
TSLLTLSLSP	10	Unmodified	_TSLLTLSLSP_					0	0	0			REV__ENST00000522674.1_1_7:27228344-27228893:+|nuORF	REV__ENST00000522674.1_1_7:27228344-27228893:+|nuORF	MSMS	HCT116MG_D190212_S3	3	516.3017578125	2	516.30279	1030.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.776	1	29.539	29.039	30.039	-0.23655								0	0	0	0.92917	1	10828	10828		9.3831	0.78985	1		+		34410	16250	21806	21926	33125	33125					0.07695476554658853
TSLPADEKVPL	11	Unmodified	_TSLPADEKVPL_					0	0	0			REV__ENSG00000204965|ENST00000529859|PCDHA5	REV__ENSG00000204965|ENST00000529859|PCDHA5	MSMS	HCT116MG_D190212_S4	4	585.3226928710938	2	585.324254	1168.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.402	1	32.022	31.522	32.522	-0.37924								0	0	0	0.94012	1	11800	11800		11.495	2.1116	1		+		34411	14213	21807	21927	33126	33126					0.05638246612079456
TSLQNSLP	8	Unmodified	_TSLQNSLP_					0	0	0		ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3|ZFHX4;ZFHX4|p.Y3286Ifs*70|1|0.46|ENSG00000091656|chr8:76863562-76863563|-/G|frameshift_variant;ZFHX4|p.R2647Gfs*44|1|0.25|ENSG00000091656|chr8:76854854-76854854|A/-|frameshift_variant	ENSG00000091656|ENST00000651372|ZFHX4	ENSG00000091656|ENST00000651372|ZFHX4	MSMS	HCT116MG_D190212_S1	1	430.2295837402344	2	430.229625	858.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.869	1	24.869	24.369	25.369	0								0	0	0	0.8837	1	8921	8921		10.824	1.4765	1				34412	1568	21808	21928	33127	33127					0.009812191094397349
TSLRKKCGQPR	11	Unmodified	_TSLRKKCGQPR_					0	0	0		ENST00000537802.5_1_13:111301459-111315833:-|nuORF	ENST00000537802.5_1_13:111301459-111315833:-|nuORF	ENST00000537802.5_1_13:111301459-111315833:-|nuORF	MSMS	HCT116MG_D190212_S2	2	637.3617553710938	2	637.361513	1272.70847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.452	1	25.083	24.583	25.583	-0.36914								0	0	0	0.94538	1	9166	9166		8.7454	0	1				34413	8675	21809	21929	33128	33128					0.08302730942477865
TSLRKLKVVYR	11	Unmodified	_TSLRKLKVVYR_					0	0	0		ENST00000494664.5_1_3:119242472-119242556:+|nuORF	ENST00000494664.5_1_3:119242472-119242556:+|nuORF	ENST00000494664.5_1_3:119242472-119242556:+|nuORF	MSMS	HCT116MG_D190212_S3	3	681.9326782226562	2	681.932628	1361.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.989	1	37.687	37.187	38.187	-0.30137								0	0	0	0.95954	1	14057	14057		1.3295	0	1				34414	8371	21810	21930	33129	33129					0.18425266956296582
TSLRSLRF	8	Unmodified	_TSLRSLRF_					0	0	0		ENST00000519589.1_1_8:133153289-133492518:-|nuORF;KCNQ3|p.Q653Rfs*16|1|0.06|ENSG00000184156|chr8:132129923-132129924|-/C|frameshift_variant;KCNQ3|p.F713Lfs*6|1|0.24|ENSG00000184156|chr8:132129742-132129742|A/-|frameshift_variant;nc|ENSG00000184156|O43525-2|KCNQ3;ENSG00000184156|ENST00000388996|KCNQ3	ENST00000519589.1_1_8:133153289-133492518:-|nuORF	ENST00000519589.1_1_8:133153289-133492518:-|nuORF	MSMS	HCT116MG_D190212_S4	4	490.2857971191406	2	490.287808	978.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.226	1	22.978	22.478	23.478	-0.24775								0	0	0	0.8837	1	8121	8121		8.5933	0.68312	1				34415	5759	21811	21931	33130	33130					0.07092582400002811
TSLSALYETI	10	Unmodified	_TSLSALYETI_					0	0	0			REV__nc|ENSG00000137033|O95760-3|IL33	REV__nc|ENSG00000137033|O95760-3|IL33	MULTI-MSMS	HCT116MG_D190212_S2	2	549.2671508789062	2	549.289879	1096.56521	0.42335	0.00023254	1.5825	0.00086927	2.0059	0.0011018	549.2907573751232	40.984	0.31091	40.914	40.725	41.036	-0.069626					14	5	3	0	0	0	0.64004	1	15397	15397		25.399	4.9457	1	111600000	+		34416	12160	21812	21932	33131	33131					0.02078582312378785
TSLTLIKQ	8	Unmodified	_TSLTLIKQ_					0	0	0			REV__ENST00000422413.1_1_2:32254798-32264848:-|nuORF	REV__ENST00000422413.1_1_2:32254798-32264848:-|nuORF	MSMS	HCT116MG_D190212_S4	4	452.27813720703125	2	452.279118	902.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.483	1	39.102	38.602	39.602	-0.38055								0	0	0	0.8837	1	14508	14508		2.3027	0.4585	1		+		34417	15527	21813	21933	33132	33132					0.08851242074319998
TSLTRVGRVA	10	Unmodified	_TSLTRVGRVA_					0	0	0		ENST00000221327.8_1_19:45004413-45004494:-|nuORF	ENST00000221327.8_1_19:45004413-45004494:-|nuORF	ENST00000221327.8_1_19:45004413-45004494:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	530.317138671875	2	530.317097	1058.61964	0.27584	0.00014628	0.16796	8.907E-05	0.4438	0.00023535	530.3170939829257	16.239	0.15615	16.239	16.161	16.317	0					4	2	2	0	0	0	0.8806	1	5481	5481		3.2813	0	1	3886500			34418	6754	21814	21934	33133	33133					0.09267638974483816
TSLVDHVR	8	Unmodified	_TSLVDHVR_					0	0	0		ENST00000416880.5_1_3:42610473-42623377:-|nuORF;ENST00000450981.5_1_3:42610473-42628939:-|nuORF;ENST00000423701.6_1_3:42610473-42623377:-|nuORF;ENST00000417572.5_1_3:42610473-42642545:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	463.75640869140625	2	463.756341	925.498129	0.46527	0.00021577	0.30362	0.00014081	0.76889	0.00035658	463.7566896179351	25.752	0.57345	25.624	25.442	26.016	-0.12795					16	10	3	0	0	0	0.72197	1	9241	9241		20.454	1.0146	1	4348600			34419	7760	21815	21935	33134	33134					0.03240016611948704
TSLWLRWMPL	10	Unmodified	_TSLWLRWMPL_					0	0	0		SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.29|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;SDK2|p.P1324Lfs*69|1|0.1|ENSG00000069188|chr17:73391466-73391466|G/-|frameshift_variant;ENST00000479356.1_1_17:71354047-71433905:-|nuORF	SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant	SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	434.9057312011719	3	434.905759	1301.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.288	1	15.126	14.626	15.626	-0.16173								0	0	0	0.96804	1	4916	4916		0.69767	0	1				34420	1214	21816	21936	33135	33135					0.05666899830384864
TSMAPGLVIQA	11	Unmodified	_TSMAPGLVIQA_					0	0	0		ENSG00000147475|ENST00000519638|ERLIN2;ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	MSMS	HCT116MG_D190212_S3	3	544.248291015625	2	544.294442	1086.57433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.356	1	31.087	30.587	31.587	-0.26946								0	0	0	0.89672	1	11453	11453		20.415	6.5085	1				34421	3987	21817	21937	33136	33136					0.03450652397077647
TSMDYYYY	8	Unmodified	_TSMDYYYY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;MYO1E|p.L240R|1|0.38|ENSG00000157483|chr15:59224747-59224747|A/C|missense_variant	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	HCT116MG_D190212_S1	1	553.2130126953125	2	553.212783	1104.41101	0.43935	0.00024305	-0.17418	-9.6359E-05	0.26517	0.00014669	553.2125947375156	31.861	0.52163	31.861	31.596	32.118	0					16	9	2	0	0	0	0.71835	1	11732	11732		20.871	0.41758	1	6588500			34422	4329	21818	21938	33137	33137					-0.13701570444663957
TSMDYYYY	8	Unmodified	_TSMDYYYY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;MYO1E|p.L240R|1|0.38|ENSG00000157483|chr15:59224747-59224747|A/C|missense_variant	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	HCT116MG_D190212_S2	2	554.2565307617188	2	553.212783	1104.41101	0.44167	0.00024434	-0.38434	-0.00021262	0.057328	3.1715E-05	553.2125687495811	32.105	0.6741	31.875	31.58	32.254	-0.23009					21	12	3	0	0	0	0.81097	1	11805	11805		10.183	2.2732	1	22018000			34423	4329	21818	21938	33138	33138					-0.13701570444663957
TSMDYYYY	8	Unmodified	_TSMDYYYY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;MYO1E|p.L240R|1|0.38|ENSG00000157483|chr15:59224747-59224747|A/C|missense_variant	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	HCT116MG_D190212_S3	3	553.21337890625	2	553.212783	1104.41101	0.30434	0.00016837	-0.3568	-0.00019738	-0.052455	-2.9019E-05	553.2125141741773	32.178	0.72855	31.899	31.63	32.358	-0.27841					23	13	2	0	0	0	0.71835	1	11777	11777		20.871	0.41758	1	6110400			34424	4329	21818	21938	33139	33139					-0.13701570444663957
TSMHLFFPVQ	10	Unmodified	_TSMHLFFPVQ_					0	0	0		NRXN1|p.Q932Pfs*14|1|0.32|ENSG00000179915|chr2:50497419-50497420|-/A|frameshift_variant	NRXN1|p.Q932Pfs*14|1|0.32|ENSG00000179915|chr2:50497419-50497420|-/A|frameshift_variant	NRXN1|p.Q932Pfs*14|1|0.32|ENSG00000179915|chr2:50497419-50497420|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	603.790771484375	2	603.802434	1205.59032	0.57593	0.00034775	-0.13849	-8.3618E-05	0.43745	0.00026413	603.8023018964006	16.502	0.59226	16.336	16.119	16.712	-0.16664					24	11	3	0	0	0	0.86862	1	5544	5544		6.2058	0.47393	1	7384600			34425	9708	21819	21939	33140	33140					-0.004256413660414182
TSMVGPNMD	9	Unmodified	_TSMVGPNMD_					0	0	0			REV__ENSG00000243978|ENST00000520821|RTL9	REV__ENSG00000243978|ENST00000520821|RTL9	MSMS	HCT116MG_D190212_S3	3	475.7379150390625	2	476.199153	950.383753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.954	1	21.955	21.455	22.455	0.00074577								0	0	0	0.76603	1	7677	7677		14.838	0	1		+		34426	14367	21820	21940	33141	33141					-0.09342377256666623
TSNGIYYQVRA	11	Unmodified	_TSNGIYYQVRA_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MSMS	HCT116MG_D190212_S4	4	636.3219604492188	2	636.322576	1270.6306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.336	1	31.956	31.456	32.456	-0.37924								0	0	0	0.88801	1	11773	11773		21.537	8.4945	1				34427	9495	21821	21941	33142	33142					0.006109965580890275
TSNKVTCNLGP	11	Unmodified	_TSNKVTCNLGP_					0	0	0			REV__IL17RA|p.C768Lfs*3|1|0.15|ENSG00000177663|chr22:17109513-17109514|-/G|frameshift_variant	REV__IL17RA|p.C768Lfs*3|1|0.15|ENSG00000177663|chr22:17109513-17109514|-/G|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	567.7848510742188	2	567.284605	1132.55466	0.51356	0.00029134	-2.6037	-0.0014771	-2.0902	-0.0011857	567.2831708950996	27.184	0.67526	26.873	26.483	27.158	-0.3114					19	12	2	0	0	0	0.34807	1	9819	9819		12.241	0	1	3938700	+		34428	13579	21822	21942	33143	33143					-0.0063172361371925945
TSNMLLFIP	9	Unmodified	_TSNMLLFIP_					0	0	0		ENST00000521795.1_1_8:120865268-120868035:-|nuORF;ENSG00000136982|ENST00000313655|DSCC1	ENST00000521795.1_1_8:120865268-120868035:-|nuORF	ENST00000521795.1_1_8:120865268-120868035:-|nuORF	MSMS	HCT116MG_D190212_S3	3	518.2811279296875	2	518.280803	1034.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.717	1	31.447	30.947	31.947	-0.27028								0	0	0	0.76641	1	11598	11598		13.508	0.97634	1				34429	3453	21823	21943	33144	33144					0.031161688566726298
TSNMLLFIP	9	Unmodified	_TSNMLLFIP_					0	0	0		ENST00000521795.1_1_8:120865268-120868035:-|nuORF;ENSG00000136982|ENST00000313655|DSCC1	ENST00000521795.1_1_8:120865268-120868035:-|nuORF	ENST00000521795.1_1_8:120865268-120868035:-|nuORF	MSMS	HCT116MG_D190212_S3	3	518.2814331054688	2	518.280803	1034.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.814	1	31.544	31.044	32.044	-0.27028								0	0	0	0.76781	1	11637	11637		8.5933	0	1				34430	3453	21823	21943	33145	33145					0.031161688566726298
TSNMYTNMKGS	11	Unmodified	_TSNMYTNMKGS_					0	0	0			REV__ENST00000480884.5_1_3:56649942-56650128:+|nuORF	REV__ENST00000480884.5_1_3:56649942-56650128:+|nuORF	MSMS	HCT116MG_D190212_S3	3	617.359619140625	2	617.265555	1232.51656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.155	1	34.857	34.357	35.357	-0.29826								0	0	0	0.95196	1	12966	12966		5.2969	0	1		+		34431	10118	21824	21944	33146	33146					-0.09039977590691706
TSNNEEKPEDP	11	Unmodified	_TSNNEEKPEDP_					0	0	0			REV__ENSG00000169064|ENST00000675490|ZBBX	REV__ENSG00000169064|ENST00000675490|ZBBX	MULTI-MSMS	HCT116MG_D190212_S3	3	630.326171875	2	630.272946	1258.53134	0.44852	0.00028269	0.25647	0.00016165	0.70499	0.00044434	630.7747706735445	18.704	0.26021	18.773	18.615	18.875	0.069159					6	4	2	0	0	0	0.69138	1	6366	6366		24.991	4.5764	1	1378100	+		34432	13220	21825	21945	33147	33147					-0.08758490917330164
TSNQIQSPVP	10	Unmodified	_TSNQIQSPVP_					0	0	0			REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MULTI-MSMS	HCT116MG_D190212_S4	4	536.16552734375	2	535.77747	1069.54039	0.35607	0.00019077	0.32848	0.00017599	0.68455	0.00036677	535.7772760450995	26.391	0.5724	26.09	25.713	26.286	-0.30087					16	10	2	0	0	0	0.87801	1	9302	9302		3.9444	0	1	3463600	+		34433	10532	21826	21946	33148	33148					0.00839947229678728
TSNRVDCP	8	Unmodified	_TSNRVDCP_					0	0	0		ENSG00000174599|ENST00000310754|TRAM1L1	ENSG00000174599|ENST00000310754|TRAM1L1	ENSG00000174599|ENST00000310754|TRAM1L1	MSMS	HCT116MG_D190212_S1	1	446.20318603515625	2	446.203084	890.391615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.419	1	40.419	39.919	40.919	0								0	0	0	0.8837	1	15191	15191		0.79363	0	1				34434	5338	21827	21947	33149	33149					-0.0579648194488982
TSNYIPMPP	9	Unmodified	_TSNYIPMPP_					0	0	0			REV__HIVEP1|p.R1031Gfs*4|1|0.22|ENSG00000095951|chr6:12122882-12122882|A/-|frameshift_variant	REV__HIVEP1|p.R1031Gfs*4|1|0.22|ENSG00000095951|chr6:12122882-12122882|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	510.3813781738281	2	510.24696	1018.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.965	1	15.048	14.548	15.548	0.083271								0	0	0	0.76781	1	4860	4860		8.5933	0.68312	1		+		34435	11034	21828	21948	33150	33150					-0.029132810741202775
TSPAAASCRSA	11	Unmodified	_TSPAAASCRSA_					0	0	0		ENST00000551566.1_1_12:56660746-56661725:+|nuORF;ENST00000551911.5_1_12:56660746-56663089:+|nuORF	ENST00000551566.1_1_12:56660746-56661725:+|nuORF	ENST00000551566.1_1_12:56660746-56661725:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	511.2167663574219	2	511.240198	1020.46584	0.076757	3.9241E-05	0.2664	0.0001362	0.34316	0.00017544	511.2402210858832	22.907	0.35239	22.888	22.751	23.104	-0.018869					13	6	3	0	0	0	0.34567	1	8099	8099		24.991	3.454	1	31489000			34436	8758	21829	21949	33151	33151					-0.043571388533678146
TSPAACFDVPP	11	Unmodified	_TSPAACFDVPP_					0	0	0			REV__ENST00000317204.10_1_11:1297894-1298263:-|nuORF	REV__ENST00000317204.10_1_11:1297894-1298263:-|nuORF	MSMS	HCT116MG_D190212_S3	3	552.7566528320312	2	552.755149	1103.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.186	1	18.262	17.762	18.762	0.076334								0	0	0	0.92235	1	6160	6160		17.113	2.2746	1		+		34437	14867	21830	21950	33152	33152					-0.051861999080074384
TSPAAFEAKVG	11	Unmodified	_TSPAAFEAKVG_					0	0	0			REV__EXOSC8|p.N162Mfs*9|1|0.25|ENSG00000120699|chr13:37007064-37007064|A/-|frameshift_variant	REV__EXOSC8|p.N162Mfs*9|1|0.25|ENSG00000120699|chr13:37007064-37007064|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	539.281494140625	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.357	1	25.077	24.577	25.577	-0.27958								0	0	0	0.93717	1	8982	8982		13.042	2.2185	1		+		34438	11696	21831	21951	33153	33153					0.01501135235048423
TSPAAHQTSGP	11	Unmodified	_TSPAAHQTSGP_					0	0	0		ENST00000265801.6_2_8:20106968-20107088:-|nuORF	ENST00000265801.6_2_8:20106968-20107088:-|nuORF	ENST00000265801.6_2_8:20106968-20107088:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	527.2822875976562	2	527.25162	1052.48869	0.59476	0.00031359	1.194	0.00062954	1.7888	0.00094313	527.2522866005983	24.442	0.15555	24.173	24.082	24.238	-0.26881					4	2	2	0	0	0	0.33676	1	8596	8596		22.736	0	1	1768700			34439	6903	21832	21952	33154	33154					-0.035457964642318984
TSPACARCSAR	11	Unmodified	_TSPACARCSAR_					0	0	0		ENST00000474359.6_1_12:58016417-58018310:+|nuORF	ENST00000474359.6_1_12:58016417-58018310:+|nuORF	ENST00000474359.6_1_12:58016417-58018310:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	561.762939453125	2	561.760775	1121.507	0.19331	0.0001086	-0.19115	-0.00010738	0.0021623	1.2147E-06	561.7602776094351	19.484	1.9137	19.297	18.141	20.055	-0.18674					79	36	3	0	0	0	0.72373	1	6231	6231		13.042	0	1	16646000			34440	8186	21833	21953	33155	33155					-0.04889701085539855
TSPADHVSP	9	Unmodified	_TSPADHVSP_					0	0	0		ENST00000431180.5_1_3:47122459-47155398:-|nuORF	ENST00000431180.5_1_3:47122459-47155398:-|nuORF	ENST00000431180.5_1_3:47122459-47155398:-|nuORF	MSMS	HCT116MG_D190212_S3	3	455.7176818847656	2	455.716882	909.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.651	1	23.611	23.111	24.111	-0.03968								0	0	0	0.42657	1	8361	8361		32.305	4.6767	1				34441	7853	21834	21954	33156	33156					-0.03912255412990362
TSPAEEAFGDR	11	Unmodified	_TSPAEEAFGDR_					0	0	0			REV__ENSG00000185115|ENST00000332303|NSMCE3	REV__ENSG00000185115|ENST00000332303|NSMCE3	MSMS	HCT116MG_D190212_S3	3	590.2686767578125	2	590.267467	1178.52038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.519	1	20.554	20.054	21.054	0.034473								0	0	0	0.93717	1	7101	7101		13.042	1.5478	1		+		34442	13829	21835	21955	33157	33157					-0.06173848500952772
TSPAFWWPKTP	11	Unmodified	_TSPAFWWPKTP_					0	0	0		ENST00000498752.1_1_11:43740306-43740693:+|nuORF	ENST00000498752.1_1_11:43740306-43740693:+|nuORF	ENST00000498752.1_1_11:43740306-43740693:+|nuORF	MSMS	HCT116MG_D190212_S4	4	659.3359375	2	659.334956	1316.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.648	1	22.41	21.91	22.91	-0.23758								0	0	0	0.94538	1	7890	7890		8.7454	2.0222	1				34443	8415	21836	21956	33158	33158					0.009696764314412576
TSPAGAHGP	9	Unmodified	_TSPAGAHGP_					0	0	0		VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant;ENSG00000167992|ENST00000335613|VWCE	VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant	VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	794.3799438476562	1	794.379143	793.371866	0.39305	0.00031223	0.75401	0.00059897	1.1471	0.0009112	794.3799661362089	17.53	0.25987	17.611	17.482	17.742	0.081358					6	4	2	0	0	0	0.088989	1	5910	5910		60.39	18.295	1	2780500			34444	4970	21837	21957	33159	33159					-0.033084898933225304
TSPAGAHGP	9	Unmodified	_TSPAGAHGP_					0	0	0		VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant;ENSG00000167992|ENST00000335613|VWCE	VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant	VWCE|p.G829Efs*100|1|0.11|ENSG00000167992|chr11:61259057-61259058|-/ACCT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	794.3803100585938	1	794.379143	793.371866	0.6359	0.00050515	0.75063	0.00059628	1.3865	0.0011014	794.3798075893296	17.698	0.31148	17.523	17.376	17.688	-0.17501					7	5	2	0	0	0	0.19218	1	5906	5906		42.095	18.074	1	1550200			34445	4970	21837	21957	33160	33160					-0.033084898933225304
TSPAGTSAACR	11	Unmodified	_TSPAGTSAACR_					0	0	0			REV__nc|ENSG00000162746|Q6BAA4-5|FCRLB	REV__nc|ENSG00000162746|Q6BAA4-5|FCRLB	MSMS	HCT116MG_D190212_S3	3	511.2386779785156	2	511.240198	1020.46584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.811	1	18.88	18.38	19.38	0.069159								0	0	0	0.8787	1	6412	6412		22.736	2.2827	1		+		34446	17187	21838	21958	33161	33161					-0.043571388533678146
TSPALSTWPFL	11	Unmodified	_TSPALSTWPFL_					0	0	0			REV__ENST00000318083.10_2_19:49216636-49216978:-|nuORF	REV__ENST00000318083.10_2_19:49216636-49216978:-|nuORF	MSMS	HCT116MG_D190212_S4	4	610.3197631835938	2	610.321514	1218.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.291	1	25.011	24.511	25.511	-0.27958								0	0	0	0.94538	1	8955	8955		8.7454	0.58988	1		+		34447	14871	21839	21959	33162	33162					0.02790567820261458
TSPAPEARPE	10	Unmodified	_TSPAPEARPE_					0	0	0			REV__ENST00000337120.9_2_16:28875348-28875633:+|nuORF	REV__ENST00000337120.9_2_16:28875348-28875633:+|nuORF	MSMS	HCT116MG_D190212_S4	4	527.7620849609375	2	527.76182	1053.50909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.916	1	21.697	21.197	22.197	-0.21832								0	0	0	0.78574	1	7594	7594		30.637	0	1		+		34448	14953	21840	21960	33163	33163					-0.015526258044474162
TSPAPGPAR	9	Unmodified	_TSPAPGPAR_					0	0	0		ENSG00000144596|ENST00000621039|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	MULTI-SECPEP	HCT116MG_D190212_S4	4	852.9056396484375	1	853.452642	852.445365	0.71837	0.0006131	-0.16694	-0.00014248	0.55143	0.00047062	853.4523311931962	22.105	0.5714	21.877	21.416	21.988	-0.22777					16	10	2	0	0	0	0.15894	1	7661	7661		46.021	6.0636	1	2121300			34449	3871	21841	21961	33164	33164					0.013240585491416823
TSPAPHIFSY	10	Unmodified	_TSPAPHIFSY_					0	0	0			REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	560.2767944335938	2	560.277106	1118.53966	0.1647	9.2275E-05	-0.732	-0.00041013	-0.56731	-0.00031785	560.2764789164255	19.114	0.2599	18.927	18.765	19.025	-0.18674					7	4	2	0	0	0	0.71349	1	6479	6479		19.257	4.4187	1	1421200	+		34450	15330	21842	21962	33165	33165					-0.014868474193917791
TSPAPQQPQQ	10	Unmodified	_TSPAPQQPQQ_					0	0	0			REV__ARID1A|p.Q766Pfs*51|1|0.37|ENSG00000117713|chr1:26762190-26762191|-/C|frameshift_variant	REV__ARID1A|p.Q766Pfs*51|1|0.37|ENSG00000117713|chr1:26762190-26762191|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	541.3082885742188	2	541.26727	1080.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.927	1	16.585	16.085	17.085	-0.34183								0	0	0	0.83705	1	5729	5729		24.021	5.8742	1		+		34451	9983	21843	21963	33166	33166					-0.017052234301445424
TSPASWTCCPQ	11	Unmodified	_TSPASWTCCPQ_					0	0	0		ANKMY1|p.V598Yfs*37|1|0.29|ENSG00000144504|chr2:240512888-240512888|C/-|frameshift_variant	ANKMY1|p.V598Yfs*37|1|0.29|ENSG00000144504|chr2:240512888-240512888|C/-|frameshift_variant	ANKMY1|p.V598Yfs*37|1|0.29|ENSG00000144504|chr2:240512888-240512888|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	590.7413940429688	2	590.741716	1179.46888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.69	1	18.51	18.01	19.01	-0.18052								0	0	0	0.84073	1	6290	6290		27.629	7.1752	1				34452	132	21844	21964	33167	33167					-0.11367631790858468
TSPAYEPRSPG	11	Unmodified	_TSPAYEPRSPG_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	HCT116MG_D190212_S3	3	581.9404907226562	2	581.280377	1160.5462	0.41477	0.0002411	0.15331	8.9114E-05	0.56808	0.00033021	581.2804734100661	22.328	0.52099	22.328	21.99	22.511	0.00074577					16	9	2	0	0	0	0.69464	1	7846	7846		23.79	1.1317	1	3915700			34453	5627	21845	21965	33168	33168					-0.027649542586686948
TSPAYEPRSPG	11	Unmodified	_TSPAYEPRSPG_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	HCT116MG_D190212_S4	4	581.2818603515625	2	581.280377	1160.5462	0.18195	0.00010576	-0.042434	-2.4666E-05	0.13951	8.1097E-05	581.2802815228395	22.424	0.88296	22.196	21.468	22.351	-0.22777					20	16	2	0	0	0	0.55672	1	7752	7752		40.239	5.3071	1	2730500			34454	5627	21845	21965	33169	33169					-0.027649542586686948
TSPCCLQLWPK	11	Unmodified	_TSPCCLQLWPK_					0	0	0			REV__ENSG00000101846|ENST00000674429|STS	REV__ENSG00000101846|ENST00000674429|STS	MSMS	HCT116MG_D190212_S4	4	638.3151245117188	2	638.314851	1274.61515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.152	1	31.776	31.276	32.276	-0.37529								0	0	0	0.93717	1	11698	11698		13.042	4.2971	1		+		34455	11134	21846	21966	33170	33170					-0.011173295549951945
TSPCCMGDRH	10	Unmodified	_TSPCCMGDRH_					0	0	0			REV__ENST00000510534.1_1_4:107845666-107956748:-|nuORF	REV__ENST00000510534.1_1_4:107845666-107956748:-|nuORF	MSMS	HCT116MG_D190212_S4	4	553.7135620117188	2	553.712436	1105.41032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.296	1	31.917	31.417	32.417	-0.37872								0	0	0	0.92272	1	11757	11757		10.824	0	1		+		34456	12691	21847	21967	33171	33171					-0.1381701163697926
TSPCCRWL	8	Unmodified	_TSPCCRWL_					0	0	0			REV__ENST00000523382.5_1_5:179225178-179228384:-|nuORF	REV__ENST00000523382.5_1_5:179225178-179228384:-|nuORF	MSMS	HCT116MG_D190212_S4	4	483.2198181152344	2	483.220223	964.425892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.653	1	17.48	16.98	17.98	-0.17257								0	0	0	0.8837	1	5871	5871		9.3474	0	1		+		34457	16255	21848	21968	33172	33172					-0.05774357057634916
TSPCFFYAPQ	10	Unmodified	_TSPCFFYAPQ_					0	0	0			REV__ENSG00000135912|ENST00000392102|TTLL4	REV__ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	HCT116MG_D190212_S4	4	580.7581787109375	2	580.757692	1159.50083	-0.37676	-0.0002188	0.70539	0.00040966	0.32863	0.00019086	580.7578905605911	16.507	0.43636	16.34	16.067	16.504	-0.16664					12	8	2	0	0	0	0.78781	1	5375	5375		13.042	0.80181	1	1073300	+		34458	12110	21849	21969	33173	33173					-0.072538960454267
TSPCFFYAPQ	10	Unmodified	_TSPCFFYAPQ_					0	0	0			REV__ENSG00000135912|ENST00000392102|TTLL4	REV__ENSG00000135912|ENST00000392102|TTLL4	MULTI-SECPEP	HCT116MG_D190212_S4	4	581.247802734375	2	580.757692	1159.50083	-0.37676	-0.0002188	0.70539	0.00040966	0.32863	0.00019086	580.7578905605911	16.507	0.43636	16.34	16.067	16.504	-0.16664					12	8	2	0	0	0	0.31042	1	5408	5408		6.2058	0.9089	1	1073300	+		34459	12110	21849	21969	33174	33174					-0.072538960454267
TSPDCKNAAGP	11	Unmodified	_TSPDCKNAAGP_					0	0	0			REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B	REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B	MSMS	HCT116MG_D190212_S4	4	530.7381591796875	2	530.740031	1059.46551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.369	1	22.141	21.641	22.641	-0.22777								0	0	0	0.8787	1	7777	7777		22.736	1.1993	1		+		34460	12593	21850	21970	33175	33175					-0.0618455857322715
TSPDRRPPPRP	11	Unmodified	_TSPDRRPPPRP_					0	0	0			REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	REV__AHDC1|p.K586Nfs*37|6|0.23|ENSG00000126705|chr1:27550358-27550358|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	638.349853515625	2	638.34946	1274.68437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.122	1	26.952	26.452	27.452	-0.16933								0	0	0	0.95113	1	9760	9760		5.7319	0	1		+		34461	9895	21851	21971	33176	33176					0.058012137804553277
TSPDSLRRVFE	11	Unmodified	_TSPDSLRRVFE_					0	0	0		nc|ENSG00000263465|Q9BRL6-2|SRSF8;ENSG00000263465|ENST00000587424|SRSF8	nc|ENSG00000263465|Q9BRL6-2|SRSF8	nc|ENSG00000263465|Q9BRL6-2|SRSF8	MULTI-MSMS	HCT116MG_D190212_S4	4	654.3430786132812	2	653.841133	1305.66771	0.54093	0.00035368	0.031481	2.0583E-05	0.57241	0.00037426	653.8409866779747	30.124	1.0916	29.767	28.817	29.909	-0.35711					33	20	2	0	0	0	0.73111	1	10697	10697		5.2969	0	1	3465300			34462	6639	21852	21972	33177	33177					0.027106681038276292
TSPDVASGP	9	Unmodified	_TSPDVASGP_					0	0	0			REV__ENST00000391959.5_2_1:202549937-202550096:+|nuORF	REV__ENST00000391959.5_2_1:202549937-202550096:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	830.388916015625	1	830.389039	829.381762	1.0325	0.0008574	0.41231	0.00034238	1.4448	0.0011998	830.3889344262348	28.727	0.7292	28.519	28.123	28.852	-0.20777					30	13	3	0	0	0	0.013464	1	10357	10357		104.8	11.977	1	14396000	+		34463	15304	21853	21973	33178	33178					-0.039753466786009994
TSPDVASGP	9	Unmodified	_TSPDVASGP_					0	0	0			REV__ENST00000391959.5_2_1:202549937-202550096:+|nuORF	REV__ENST00000391959.5_2_1:202549937-202550096:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	830.390380859375	1	830.389039	829.381762	0.75293	0.00062522	1.0779	0.00089509	1.8308	0.0015203	830.3889306656841	28.791	0.623	28.45	28.107	28.73	-0.34059					18	11	3	0	0	0	0.023611	1	10374	10374		92.822	0	1	6323000	+		34464	15304	21853	21973	33179	33179					-0.039753466786009994
TSPEPLPTNH	10	Unmodified	_TSPEPLPTNH_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000482603.1_1_9:37430521-37432552:+|nuORF;ENST00000497693.1_1_9:37431939-37436776:+|nuORF;ENST00000480596.5_1_9:37429643-37436776:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MSMS	HCT116MG_D190212_S4	4	546.7701416015625	2	546.769645	1091.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.775	1	16.608	16.108	17.108	-0.16664								0	0	0	0.92272	1	5516	5516		10.824	0.75	1				34465	3462	21854	21974	33180	33180					-0.017363392873676275
TSPFRRLRER	10	Unmodified	_TSPFRRLRER_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MSMS	HCT116MG_D190212_S1	1	439.9215087890625	3	439.92146	1316.74255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.601	1	11.601	11.101	12.101	0								0	0	0	0.96937	1	3665	3665		0.13989	0.04505	1				34466	9511	21855	21975	33181	33181					0.09684895425721152
TSPFRWTFIRY	11	Unmodified	_TSPFRWTFIRY_					0	0	0			REV__GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	REV__GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	737.3834228515625	2	737.385511	1472.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.123	1	24.061	23.561	24.561	-0.061449								0	0	0	0.94416	1	8551	8551		9.3831	1.7742	1		+		34467	10828	21856	21976	33182	33182					0.039001281341825234
TSPFSALWICY	11	Unmodified	_TSPFSALWICY_					0	0	0			REV__L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|86|2|anti-sense	REV__L1PA8_dup4283|chr8:127182799-127184390:+|1.237907765894274|0.1348659474275502|3.2|479.0|86|2|anti-sense	MSMS	HCT116MG_D190212_S2	2	644.7023315429688	2	644.307549	1286.60055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.102	1	27.773	27.273	28.273	-0.32987								0	0	0	0.82946	1	10237	10237		29.082	14.676	1		+		34468	16959	21857	21977	33183	33183					-0.031290784314478515
TSPFYGNYTNY	11	Unmodified	_TSPFYGNYTNY_					0	0	0		ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	MSMS	HCT116MG_D190212_S2	2	663.38330078125	2	663.785492	1325.55643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.61	1	22.225	21.725	22.725	-0.3852								0	0	0	0.9465	1	8019	8019		8.1555	1.9497	1				34469	5140	21858	21978	33184	33184					-0.09332391324096534
TSPGAEGAAAA	11	Unmodified	_TSPGAEGAAAA_					0	0	0		ENSG00000169926|ENST00000307145|KLF13	ENSG00000169926|ENST00000307145|KLF13	ENSG00000169926|ENST00000307145|KLF13	MSMS	HCT116MG_D190212_S3	3	451.7142028808594	2	451.714339	901.414125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.968	1	17.052	16.552	17.552	0.084467								0	0	0	0.82946	1	5668	5668		29.082	1.4528	1				34470	5104	21859	21979	33185	33185					-0.04052559275623935
TSPGAPPG	8	Unmodified	_TSPGAPPG_					0	0	0			REV__ENST00000496638.1_1_10:45467008-45474208:-|nuORF	REV__ENST00000496638.1_1_10:45467008-45474208:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	683.3352661132812	1	683.335881	682.328604	0.68912	0.0004709	-0.28038	-0.00019159	0.40874	0.00027931	683.3356959632222	19.759	0.61409	19.565	19.226	19.84	-0.19367					16	11	2	0	0	0	0.50777	1	6706	6706		40.449	6.2612	1	2270100	+		34471	16092	21860	21980	33186	33186					-0.02526679670620524
TSPGAPPG	8	Unmodified	_TSPGAPPG_					0	0	0			REV__ENST00000496638.1_1_10:45467008-45474208:-|nuORF	REV__ENST00000496638.1_1_10:45467008-45474208:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	683.335881	682.328604	0.68912	0.0004709	-0.28038	-0.00019159	0.40874	0.00027931	683.3356959632222	19.759	0.61409	19.565	19.226	19.84	-0.19367	-0.0087029	4.0667E-05	NaN	40.449	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2270100	+		34472	16092	21860	21980							-0.02526679670620524
TSPGDKCRMAP	11	Unmodified	_TSPGDKCRMAP_					0	0	0		ENST00000465558.5_1_2:219612840-219617731:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4	ENST00000465558.5_1_2:219612840-219617731:+|nuORF	ENST00000465558.5_1_2:219612840-219617731:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	581.7694091796875	2	581.770808	1161.52706	0.021149	1.2304E-05	-1.4755	-0.00085841	-1.4544	-0.00084611	581.7697305325221	23.096	0.47086	22.859	22.603	23.074	-0.23758					12	8	2	0	0	0	0.72373	1	8078	8078		13.042	1.5478	1	1240200			34473	3379	21861	21981	33187	33187					-0.04723950145580602
TSPGGDYYTSP	11	Unmodified	_TSPGGDYYTSP_					0	0	0		nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;NFIC|p.P456Lfs*36|1|0.3|ENSG00000141905|chr19:3453855-3453855|C/-|frameshift_variant;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC	nc|ENSG00000141905|P08651-4|NFIC	nc|ENSG00000141905|P08651-4|NFIC	MSMS	HCT116MG_D190212_S4	4	572.745849609375	2	572.743293	1143.47203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.284	1	33.899	33.399	34.399	-0.38558								0	0	0	0.94538	1	12513	12513		8.7454	0.58988	1				34474	3736	21862	21982	33188	33188					-0.09396342140848901
TSPGGGFG	8	Unmodified	_TSPGGGFG_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	679.3043212890625	1	679.304581	678.297304	0.85741	0.00058244	-0.30325	-0.000206	0.55416	0.00037644	679.3041744573462	19.925	0.72906	19.973	19.634	20.363	0.048107					24	13	2	0	0	0	0.47906	1	6828	6828		42.968	22.097	1	11859000	+		34475	10730	21863	21983	33189	33189					-0.05471252704705876
TSPGGGFG	8	Unmodified	_TSPGGGFG_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	679.3049926757812	1	679.304581	678.297304	0.78348	0.00053222	-0.074845	-5.0842E-05	0.70864	0.00048138	679.3042877061339	20.616	0.83286	20.651	20.298	21.131	0.034472					26	15	2	0	0	0	0.32897	2	7056	7056;7289		56.541	16.093	1	8713100	+		34476	10730	21863	21983	33190;33191	33190					-0.05471252704705876
TSPGGGFG	8	Unmodified	_TSPGGGFG_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	679.3051147460938	1	679.304581	678.297304	0.68695	0.00046665	0.83197	0.00056516	1.5189	0.0010318	679.3043423242166	19.937	0.71795	19.743	19.33	20.048	-0.19368					30	13	3	0	0	0	0.47906	1	6726	6726		42.968	22.097	1	7495300	+		34477	10730	21863	21983	33192	33192					-0.05471252704705876
TSPGGGFG	8	Unmodified	_TSPGGGFG_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	679.30517578125	1	679.304581	678.297304	0.70562	0.00047933	-0.11776	-7.9994E-05	0.58786	0.00039934	679.3043738843439	20.641	1.1948	20.44	19.988	21.183	-0.20133					34	22	2	0	0	0	0.40466	1	6953	6953		49.669	6.7009	1	7389000	+		34478	10730	21863	21983	33193	33193					-0.05471252704705876
TSPGGGFG	8	Unmodified	_TSPGGGFG_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	679.304581	678.297304	0.85741	0.00058244	-0.30325	-0.000206	0.55416	0.00037644	679.3041744573462	19.925	0.72906	19.973	19.634	20.363	0.048107	0.1149	-8.3018E-05	NaN	42.968	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11859000	+		34479	10730	21863	21983							-0.05471252704705876
TSPGGGFG	8	Unmodified	_TSPGGGFG_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	679.304581	678.297304	0.78348	0.00053222	-0.074845	-5.0842E-05	0.70864	0.00048138	679.3042877061339	20.616	0.83286	20.651	20.298	21.131	0.034472	0.10548	1.4069E-05	NaN	56.541	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8713100	+		34480	10730	21863	21983							-0.05471252704705876
TSPGGGFG	8	Unmodified	_TSPGGGFG_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	679.304581	678.297304	0.68695	0.00046665	0.83197	0.00056516	1.5189	0.0010318	679.3043423242166	19.937	0.71795	19.743	19.33	20.048	-0.19368	-0.1149	0.00068814	NaN	42.968	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7495300	+		34481	10730	21863	21983							-0.05471252704705876
TSPGGLHLQEH	11	Unmodified	_TSPGGLHLQEH_					0	0	0			REV__ENST00000314045.11_1_12:113595253-113595667:-|nuORF	REV__ENST00000314045.11_1_12:113595253-113595667:-|nuORF	MSMS	HCT116MG_D190212_S3	3	588.2930297851562	2	588.293819	1174.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.176	1	20.224	19.724	20.724	0.048107								0	0	0	0.93717	1	6963	6963		13.042	0	1		+		34482	14851	21864	21984	33194	33194					-0.007218456474674895
TSPGGPPSCL	10	Unmodified	_TSPGGPPSCL_					0	0	0		ENST00000571688.5_2_16:11643218-11643479:-|nuORF	ENST00000571688.5_2_16:11643218-11643479:-|nuORF	ENST00000571688.5_2_16:11643218-11643479:-|nuORF	MSMS	HCT116MG_D190212_S3	3	458.21575927734375	2	458.21566	914.416767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.085	1	19.154	18.654	19.654	0.069159								0	0	0	0.87399	1	6523	6523		19.257	2.3147	1				34483	8895	21865	21985	33195	33195					-0.04386427142321736
TSPGGSSQPPH	11	Unmodified	_TSPGGSSQPPH_					0	0	0		nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2;AOC2|p.N533Tfs*4|1|0.08|ENSG00000131480|chr17:42849091-42849091|A/-|frameshift_variant;AOC2|p.Q309Pfs*27|1|0.41|ENSG00000131480|chr17:42845549-42845567|TTCAGTTCTCGCCCCAGGG/-|frameshift_variant;AOC2|p.P115Hfs*20|1|0.27|ENSG00000131480|chr17:42844965-42844965|C/-|frameshift_variant	nc|ENSG00000131480|O75106-2|AOC2	nc|ENSG00000131480|O75106-2|AOC2	MULTI-MSMS	HCT116MG_D190212_S3	3	526.244384765625	2	526.243795	1050.47304	0.28648	0.00015076	0.38643	0.00020335	0.67291	0.00035411	526.2439635297706	16.663	1.1964	16.749	15.977	17.173	0.085096					32	22	2	0	0	0	0.60456	1	5563	5563		34.932	9.5328	1	2327800			34484	3146	21866	21986	33196	33196					-0.05018082981291627
TSPGGSSQPPH	11	Unmodified	_TSPGGSSQPPH_					0	0	0		nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2;AOC2|p.N533Tfs*4|1|0.08|ENSG00000131480|chr17:42849091-42849091|A/-|frameshift_variant;AOC2|p.Q309Pfs*27|1|0.41|ENSG00000131480|chr17:42845549-42845567|TTCAGTTCTCGCCCCAGGG/-|frameshift_variant;AOC2|p.P115Hfs*20|1|0.27|ENSG00000131480|chr17:42844965-42844965|C/-|frameshift_variant	nc|ENSG00000131480|O75106-2|AOC2	nc|ENSG00000131480|O75106-2|AOC2	MULTI-MSMS	HCT116MG_D190212_S4	4	525.76416015625	2	526.243795	1050.47304	-0.13936	-7.3335E-05	0.48084	0.00025304	0.34148	0.0001797	526.2440053393573	16.762	1.2031	16.595	15.716	16.919	-0.16664					43	23	3	0	0	0	0.6626	3	5518	5347;5518;5574		28.495	28.495	1	1882500			34485	3146	21866	21986	33197;33198;33199	33198					-0.05018082981291627
TSPGGSSQPPH	11	Unmodified	_TSPGGSSQPPH_					0	0	0		nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2;AOC2|p.N533Tfs*4|1|0.08|ENSG00000131480|chr17:42849091-42849091|A/-|frameshift_variant;AOC2|p.Q309Pfs*27|1|0.41|ENSG00000131480|chr17:42845549-42845567|TTCAGTTCTCGCCCCAGGG/-|frameshift_variant;AOC2|p.P115Hfs*20|1|0.27|ENSG00000131480|chr17:42844965-42844965|C/-|frameshift_variant	nc|ENSG00000131480|O75106-2|AOC2	nc|ENSG00000131480|O75106-2|AOC2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	526.243795	1050.47304	0.28648	0.00015076	0.38643	0.00020335	0.67291	0.00035411	526.2439635297706	16.663	1.1964	16.749	15.977	17.173	0.085096	0.076736	-7.1234E-05	NaN	34.932	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2327800			34486	3146	21866	21986							-0.05018082981291627
TSPGIPRRPT	10	Unmodified	_TSPGIPRRPT_					0	0	0		ENST00000392307.2_1_6:144263318-144263387:-|nuORF	ENST00000392307.2_1_6:144263318-144263387:-|nuORF	ENST00000392307.2_1_6:144263318-144263387:-|nuORF	MSMS	HCT116MG_D190212_S4	4	541.3093872070312	2	541.309272	1080.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.128	1	25.838	25.338	26.338	-0.29022								0	0	0	0.93099	1	9293	9293		10.074	0	1				34487	7609	21867	21987	33200	33200					0.06691352457414723
TSPGKERENFL	11	Unmodified	_TSPGKERENFL_					0	0	0		ENST00000274030.10_1_4:120160402-120160465:+|nuORF	ENST00000274030.10_1_4:120160402-120160465:+|nuORF	ENST00000274030.10_1_4:120160402-120160465:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	639.3276977539062	2	639.327859	1276.64116	0.48003	0.0003069	0.036685	2.3454E-05	0.51672	0.00033035	639.3278774756066	31.711	1.1991	31.44	30.595	31.794	-0.27028					60	22	4	0	0	0	0.71776	1	11448	11448		15.248	4.449	1	37752000			34488	6927	21868	21988	33201	33201					0.013909792125332388
TSPGKERENFL	11	Unmodified	_TSPGKERENFL_					0	0	0		ENST00000274030.10_1_4:120160402-120160465:+|nuORF	ENST00000274030.10_1_4:120160402-120160465:+|nuORF	ENST00000274030.10_1_4:120160402-120160465:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	639.3281860351562	2	639.327859	1276.64116	0.36273	0.0002319	0.095398	6.099E-05	0.45812	0.00029289	639.3279861703242	31.713	1.1921	31.339	30.607	31.799	-0.3735					63	22	4	0	0	0	0.7298	1	11357	11357		10.8	2.644	1	37310000			34489	6927	21868	21988	33202	33202					0.013909792125332388
TSPGLGHQ	8	Unmodified	_TSPGLGHQ_					0	0	0		ENST00000442383.1_1_20:42839752-42839989:+|nuORF	ENST00000442383.1_1_20:42839752-42839989:+|nuORF	ENST00000442383.1_1_20:42839752-42839989:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	796.3955078125	1	796.394793	795.387516	0.59438	0.00047336	1.3251	0.0010553	1.9195	0.0015287	796.3958977169365	16.896	0.20821	16.98	16.86	17.068	0.084467					5	3	2	0	0	0	0.2797	1	5672	5672		21.747	0	1	1376700			34490	7929	21869	21989	33203	33203					-0.01836203376285539
TSPGNLPQP	9	Unmodified	_TSPGNLPQP_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-SECPEP	HCT116MG_D190212_S2	2	456.2007141113281	2	455.735074	909.455596	-0.14365	-6.5465E-05	0.10718	4.8844E-05	-0.036469	-1.662E-05	455.73506817682744	18.304	0.2092	17.941	17.851	18.061	-0.36325					5	3	2	0	0	0	0.17767	1	6254	6254		39.957	25.552	1	5083700			34491	5168	21870	21990	33204	33204					-0.0027537851628949284
TSPGPTDL	8	Unmodified	_TSPGPTDL_					0	0	0		CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	394.19708251953125	2	394.195251	786.375948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.441	1	31.071	30.571	31.571	-0.37026								0	0	0	0.8837	1	11411	11411		9.3474	0	1				34492	409	21871	21991	33205	33205					-0.025784451902836736
TSPGPVPG	8	Unmodified	_TSPGPVPG_					0	0	0		ENST00000489591.5_1_17:39969413-39975983:+|nuORF	ENST00000489591.5_1_17:39969413-39975983:+|nuORF	ENST00000489591.5_1_17:39969413-39975983:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	711.3682250976562	1	711.367181	710.359904	0.74541	0.00053026	-2.181	-0.0015515	-1.4356	-0.0010213	711.3667341098129	24.853	0.41625	24.769	24.497	24.913	-0.083694					10	7	2	0	0	0	0.23352	1	8844	8844		67.035	17.366	1	2894800			34493	8327	21872	21992	33206	33206					-0.006861066365217994
TSPGPVPG	8	Unmodified	_TSPGPVPG_					0	0	0		ENST00000489591.5_1_17:39969413-39975983:+|nuORF	ENST00000489591.5_1_17:39969413-39975983:+|nuORF	ENST00000489591.5_1_17:39969413-39975983:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	711.367431640625	1	711.367181	710.359904	0.93704	0.00066658	-0.069467	-4.9416E-05	0.86757	0.00061716	711.3669427320218	24.984	0.41604	24.708	24.489	24.905	-0.27643					11	7	2	0	0	0	0.32897	1	8824	8824		56.541	16.093	1	2048300			34494	8327	21872	21992	33207	33207					-0.006861066365217994
TSPGQSPEPP	10	Unmodified	_TSPGQSPEPP_					0	0	0			REV__CDHR5|p.G554Rfs*161|1|0.26|ENSG00000099834|chr11:618899-618900|-/G|frameshift_variant	REV__CDHR5|p.G554Rfs*161|1|0.26|ENSG00000099834|chr11:618899-618900|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	498.73541259765625	2	498.735271	995.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.306	1	24.048	23.548	24.548	-0.25816								0	0	0	0.78574	1	8557	8557		30.637	1.555	1		+		34495	10139	21873	21993	33208	33208					-0.041920035870930406
TSPGWPSEYPA	11	Unmodified	_TSPGWPSEYPA_					0	0	0		ENST00000519675.1_1_8:105521165-105601125:-|nuORF;LRP12|p.C451Afs*37|2|0.28|ENSG00000147650|chr8:104497201-104497201|A/-|frameshift_variant;nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	MSMS	HCT116MG_D190212_S3	3	596.26708984375	2	596.269478	1190.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.492	1	19.552	19.052	20.052	0.05983								0	0	0	0.93717	1	6687	6687		13.042	1.5478	1				34496	3996	21874	21994	33209	33209					-0.06323759007227636
TSPHAEPI	8	Unmodified	_TSPHAEPI_					0	0	0			REV__TIPARP|p.I342Tfs*25|1|0.42|ENSG00000163659|chr3:156694125-156694128|TATT/-|frameshift_variant	REV__TIPARP|p.I342Tfs*25|1|0.42|ENSG00000163659|chr3:156694125-156694128|TATT/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	426.7179870605469	2	426.216517	850.418482	0.073371	3.1272E-05	0.033433	1.425E-05	0.1068	4.5522E-05	426.2164609482051	32.271	0.41516	31.894	31.64	32.055	-0.37686					11	7	2	0	0	0	0.29766	1	11791	11791		14.582	3.7578	1	2057400	+		34497	12941	21875	21995	33210	33210					-0.012710500620414678
TSPHLHLVW	9	Unmodified	_TSPHLHLVW_					0	0	0		VGLL3|p.P147Qfs*65|1|0.3|ENSG00000206538|chr3:86969087-86969087|G/-|frameshift_variant	VGLL3|p.P147Qfs*65|1|0.3|ENSG00000206538|chr3:86969087-86969087|G/-|frameshift_variant	VGLL3|p.P147Qfs*65|1|0.3|ENSG00000206538|chr3:86969087-86969087|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	545.2935791015625	2	545.295633	1088.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.73	1	20.764	20.264	21.264	0.034473								0	0	0	0.74436	1	7186	7186		16.942	0	1				34498	18692	21876	21996	33211	33211					0.035968689170204016
TSPHPEPA	8	Unmodified	_TSPHPEPA_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MULTI-MSMS	HCT116MG_D190212_S4	4	418.20062255859375	2	418.200867	834.387182	0.089795	3.7552E-05	0.28825	0.00012055	0.37805	0.0001581	418.2007981067774	18.961	1.2452	18.774	17.988	19.233	-0.18674					49	23	3	0	0	0	0.81821	1	6519	6519		9.3474	2.9933	1	9916300	+		34499	12172	21877	21997	33212	33212					-0.036636230961448746
TSPHPGATEAP	11	Unmodified	_TSPHPGATEAP_					0	0	0			REV__ENST00000470487.5_1_3:167813511-167813697:-|nuORF	REV__ENST00000470487.5_1_3:167813511-167813697:-|nuORF	MSMS	HCT116MG_D190212_S4	4	532.7539672851562	2	532.753995	1063.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.855	1	22.618	22.118	23.118	-0.23758								0	0	0	0.91433	1	7973	7973		18.146	1.2041	1		+		34500	15864	21878	21998	33213	33213					-0.03576912321477721
TSPHRRTQEPV	11	Unmodified	_TSPHRRTQEPV_					0	0	0		SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant;SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG;SPEG|p.Q2233Rfs*6|2|0.25|ENSG00000072195|chr2:219484154-219484154|C/-|frameshift_variant;SPEG|p.R2315Qfs*8|1|0.31|ENSG00000072195|chr2:219484399-219484400|-/C|frameshift_variant;SPEG|p.T870Pfs*11|1|0.35|ENSG00000072195|chr2:219462043-219462043|C/-|frameshift_variant;SPEG|p.T870Hfs*52|1|0.36|ENSG00000072195|chr2:219462042-219462043|-/C|frameshift_variant;SPEG|p.R1307Gfs*12|1|0.34|ENSG00000072195|chr2:219472303-219472303|C/-|frameshift_variant;SPEG|p.S1915Vfs*324|1|0.21|ENSG00000072195|chr2:219483200-219483200|C/-|frameshift_variant;SPEG|p.M1971Wfs*268|1|0.31|ENSG00000072195|chr2:219483369-219483369|C/-|frameshift_variant;SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant;SPEG|p.G628Vfs*92|1|0.31|ENSG00000072195|chr2:219449034-219449034|C/-|frameshift_variant	SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	654.3440551757812	2	654.344375	1306.6742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.609	1	32.23	31.73	32.73	-0.37924								0	0	0	0.95113	1	11884	11884		5.7319	0	1				34501	1264;18227	21879	21999	33214	33214					0.03312606055214928
TSPHTATSPP	10	Unmodified	_TSPHTATSPP_					0	0	0		CD300LG|p.P205T|1|0.36|ENSG00000161649|chr17:43853938-43853938|C/A|missense_variant	CD300LG|p.P205T|1|0.36|ENSG00000161649|chr17:43853938-43853938|C/A|missense_variant	CD300LG|p.P205T|1|0.36|ENSG00000161649|chr17:43853938-43853938|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	498.2438049316406	2	498.243264	994.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.394	1	24.125	23.625	24.625	-0.26881								0	0	0	0.81484	1	8592	8592		26.884	1.4843	1				34502	373	21880	22000	33215	33215					-0.025482973501880224
TSPHTPQQP	9	Unmodified	_TSPHTPQQP_					0	0	0			REV__nc|ENSG00000125319|Q8N3J3-3|HROB	REV__nc|ENSG00000125319|Q8N3J3-3|HROB	MULTI-MSMS	HCT116MG_D190212_S3	3	496.74371337890625	2	496.743431	991.472308	0.2465	0.00012245	0.20764	0.00010315	0.45414	0.00022559	496.743416284476	21.278	1.4134	21.297	20.594	22.008	0.018446					41	26	2	0	0	0	0.084109	1	7494	7494		61.357	17.499	1	10149000	+		34503	11806	21881	22001	33216	33216					-0.023768776303313643
TSPHTPQQP	9	Unmodified	_TSPHTPQQP_					0	0	0			REV__nc|ENSG00000125319|Q8N3J3-3|HROB	REV__nc|ENSG00000125319|Q8N3J3-3|HROB	MULTI-SECPEP	HCT116MG_D190212_S3	3	497.4563293457031	2	496.743431	991.472308	0.27652	0.00013736	-0.080643	-4.0059E-05	0.19587	9.7299E-05	496.74323892486547	24.503	0.41637	24.419	24.133	24.549	-0.083694					10	7	2	0	0	0	0.20889	1	8619	8619		24.021	4.3946	1	2444200	+		34504	11806	21881	22001	33217	33217					-0.023768776303313643
TSPINQQVAPA	11	Unmodified	_TSPINQQVAPA_					0	0	0			REV__WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant	REV__WAS|p.P353Hfs*92|1|0.59|ENSG00000015285|chrX:48688782-48688782|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	563.2980346679688	2	563.29857	1124.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.982	1	16.067	15.567	16.567	0.085423								0	0	0	0.93552	1	5270	5270		13.906	1.6654	1		+		34505	10540	21882	22002	33218	33218					0.025279226380462205
TSPKELAYSWG	11	Unmodified	_TSPKELAYSWG_					0	0	0			REV__IFT80|p.N268S|1|0.17|ENSG00000068885|chr3:160319914-160319914|T/C|missense_variant	REV__IFT80|p.N268S|1|0.17|ENSG00000068885|chr3:160319914-160319914|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	619.80419921875	2	619.806228	1237.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.963	1	33.579	33.079	34.079	-0.38426								0	0	0	0.93295	1	12383	12383		15.248	2.206	1		+		34506	16895	21883	22003	33219	33219					-0.011392105647928474
TSPKESRMSSE	11	Unmodified	_TSPKESRMSSE_					0	0	0			REV__ENST00000498803.5_1_18:12449639-12452543:-|nuORF	REV__ENST00000498803.5_1_18:12449639-12452543:-|nuORF	MSMS	HCT116MG_D190212_S4	4	619.786865234375	2	619.787709	1237.56087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.483	1	20.282	19.782	20.782	-0.20133								0	0	0	0.92983	1	7014	7014		16.149	1.3108	1		+		34507	12050	21884	22004	33220	33220					-0.04841250172853506
TSPKIHQQP	9	Unmodified	_TSPKIHQQP_					0	0	0		ENST00000262124.15_1_18:12985345-12985384:+|nuORF	ENST00000262124.15_1_18:12985345-12985384:+|nuORF	ENST00000262124.15_1_18:12985345-12985384:+|nuORF	MSMS	HCT116MG_D190212_S3	3	518.2810668945312	2	518.282723	1034.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.973	1	23.912	23.412	24.412	-0.061449								0	0	0	0.76718	1	8491	8491		10.824	2.2306	1				34508	6861	21885	22005	33221	33221					0.03499974674764417
TSPKIHQQP	9	Unmodified	_TSPKIHQQP_					0	0	0		ENST00000262124.15_1_18:12985345-12985384:+|nuORF	ENST00000262124.15_1_18:12985345-12985384:+|nuORF	ENST00000262124.15_1_18:12985345-12985384:+|nuORF	MSMS	HCT116MG_D190212_S4	4	518.28125	2	518.282723	1034.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.026	1	23.767	23.267	24.267	-0.25816								0	0	0	0.76718	1	8443	8443		10.824	2.9138	1				34509	6861	21885	22005	33222	33222					0.03499974674764417
TSPKRLLDYHE	11	Unmodified	_TSPKRLLDYHE_					0	0	0		nc|ENSG00000169946|Q8WW38-2|ZFPM2;ENSG00000169946|ENST00000407775|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	MSMS	HCT116MG_D190212_S4	4	679.8564453125	2	679.856783	1357.69901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.43	1	35.044	34.544	35.544	-0.38606								0	0	0	0.94538	1	12976	12976		8.7454	0	1				34510	5105	21886	22006	33223	33223					0.03447241137951096
TSPLAEPPH	9	Unmodified	_TSPLAEPPH_					0	0	0		ENST00000566542.5_1_16:15131890-15138296:-|nuORF;ENSG00000157045|ENST00000287706|NTAN1	ENST00000566542.5_1_16:15131890-15138296:-|nuORF	ENST00000566542.5_1_16:15131890-15138296:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	474.7430725097656	2	474.742899	947.471246	0.58612	0.00027826	0.12889	6.1191E-05	0.71502	0.00033945	474.7427177648964	25.349	0.57211	25.07	24.642	25.214	-0.27958					23	10	4	0	0	0	0.19218	1	8944	8944		42.095	2.1372	1	6361000			34511	4311	21887	22007	33224	33224					-0.004590919992438103
TSPLASRPQSA	11	Unmodified	_TSPLASRPQSA_					0	0	0		ENST00000584974.1_1_17:12887829-12887982:+|nuORF	ENST00000584974.1_1_17:12887829-12887982:+|nuORF	ENST00000584974.1_1_17:12887829-12887982:+|nuORF	MSMS	HCT116MG_D190212_S3	3	557.7821655273438	2	557.796195	1113.57784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.252	1	30.991	30.491	31.491	-0.26071								0	0	0	0.94755	1	11411	11411		7.609	0.31972	1				34512	8982	21888	22008	33225	33225					0.02559038495292043
TSPLDWPASY	10	Unmodified	_TSPLDWPASY_					0	0	0			REV__nc|ENSG00000187260|Q86TI4-2|WDR86	REV__nc|ENSG00000187260|Q86TI4-2|WDR86	MULTI-MSMS	HCT116MG_D190212_S4	4	568.7664184570312	2	568.766571	1135.51859	0.47787	0.0002718	-0.69422	-0.00039485	-0.21634	-0.00012305	568.766186433287	29.928	0.25996	29.571	29.441	29.701	-0.3571					7	4	2	0	0	0	0.64004	1	10833	10833		25.399	1.3787	1	4719400	+		34513	13919	21889	22009	33226	33226					-0.04374857518905628
TSPLGPLG	8	Unmodified	_TSPLGPLG_					0	0	0			REV__nc|ENSG00000065989|P27815-4|PDE4A	REV__nc|ENSG00000065989|P27815-4|PDE4A	MSMS	HCT116MG_D190212_S2	2	371.211181640625	2	371.210704	740.406855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.673	1	58.508	58.008	59.008	-0.1653								0	0	0	0.8837	1	22682	22682		0.79363	0	1		+		34514	10709	21890	22010	33227	33227					0.02626752914636654
TSPLLPSPPA	10	Unmodified	_TSPLLPSPPA_					0	0	0		nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	MSMS	HCT116MG_D190212_S3	3	490.2759704589844	2	490.276575	978.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.639	1	25.511	25.011	26.011	-0.12795								0	0	0	0.92272	1	9163	9163		10.824	0	1				34515	4148	21891	22011	33228	33228					0.048469382116991255
TSPLPRAAP	9	Unmodified	_TSPLPRAAP_					0	0	0		TMEM145|p.A465T|1|0.26|ENSG00000167619|chr19:42323781-42323781|G/A|missense_variant;ENSG00000167619|ENST00000301204|TMEM145	TMEM145|p.A465T|1|0.26|ENSG00000167619|chr19:42323781-42323781|G/A|missense_variant	TMEM145|p.A465T|1|0.26|ENSG00000167619|chr19:42323781-42323781|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	455.2611389160156	2	455.261259	908.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.233	1	18.31	17.81	18.81	0.076334								0	0	0	0.30227	1	6179	6179		39.957	0	1				34516	4938	21892	22012	33229	33229					0.050052046173163944
TSPLPRAAP	9	Unmodified	_TSPLPRAAP_					0	0	0		TMEM145|p.A465T|1|0.26|ENSG00000167619|chr19:42323781-42323781|G/A|missense_variant;ENSG00000167619|ENST00000301204|TMEM145	TMEM145|p.A465T|1|0.26|ENSG00000167619|chr19:42323781-42323781|G/A|missense_variant	TMEM145|p.A465T|1|0.26|ENSG00000167619|chr19:42323781-42323781|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	455.2607727050781	2	455.261259	908.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.182	1	30.811	30.311	31.311	-0.37026								0	0	0	0.71969	1	11306	11306		18.135	0	1				34517	4938	21892	22012	33230	33230					0.050052046173163944
TSPLQSEEPQ	10	Unmodified	_TSPLQSEEPQ_					0	0	0			REV__nc|ENSG00000184465|A2RRH5-2|WDR27	REV__nc|ENSG00000184465|A2RRH5-2|WDR27	MSMS	HCT116MG_D190212_S4	4	558.2650146484375	2	558.264393	1114.51423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.309	1	26.998	26.498	27.498	-0.3114								0	0	0	0.87399	1	9770	9770		19.257	2.1441	1		+		34518	13800	21893	22013	33231	33231					-0.0384436673248274
TSPLTQTTEKQ	11	Unmodified	_TSPLTQTTEKQ_					0	0	0		nc|ENSG00000182329|Q0VF49-2|KIAA2012;nc|ENSG00000182329|Q0VF49|KIAA2012;ENSG00000182329|ENST00000498697|KIAA2012	nc|ENSG00000182329|Q0VF49-2|KIAA2012	nc|ENSG00000182329|Q0VF49-2|KIAA2012	MSMS	HCT116MG_D190212_S4	4	617.3201293945312	2	617.319699	1232.62485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.079	1	21.851	21.351	22.351	-0.22777								0	0	0	0.94012	1	7660	7660		11.495	2.7493	1				34519	5666	21894	22014	33232	33232					0.017838532557561848
TSPNEKLQP	9	Unmodified	_TSPNEKLQP_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MSMS	HCT116MG_D190212_S4	4	507.26763916015625	2	507.266739	1012.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.705	1	26.404	25.904	26.904	-0.30087								0	0	0	0.61599	1	9526	9526		23.148	1.4018	1		+		34520	13481	21895	22015	33233	33233					0.013165622009523759
TSPNPSQSPP	10	Unmodified	_TSPNPSQSPP_					0	0	0			REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant	REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	506.2408142089844	2	506.240721	1010.46689	0.22487	0.00011384	-0.6553	-0.00033174	-0.43044	-0.00021791	506.24073756256365	21.212	1.4136	21.23	20.958	22.372	0.018446					37	26	2	0	0	0	0.64004	1	7546	7546		25.399	4.9848	1	3635400	+		34521	13211	21896	22016	33234	33234					-0.03792601212808222
TSPNPSQSPP	10	Unmodified	_TSPNPSQSPP_					0	0	0			REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant	REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	506.7425231933594	2	506.240721	1010.46689	0.23124	0.00011707	0.13654	6.9123E-05	0.36779	0.00018619	506.2407310767883	20.59	0.7792	20.389	20.144	20.923	-0.20133					22	14	2	0	0	0	0.64004	1	7069	7069		25.399	2.663	1	1841500	+		34522	13211	21896	22016	33235	33235					-0.03792601212808222
TSPNPSQSPP	10	Unmodified	_TSPNPSQSPP_					0	0	0			REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant	REV__TET2|p.V1949Sfs*7|1|0.31|ENSG00000168769|chr4:105276348-105276349|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	506.2408447265625	2	506.240721	1010.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.196	1	20.986	20.486	21.486	-0.20959								0	0	0	0.92272	1	7303	7303		10.824	0	1		+		34523	13211	21896	22016	33236	33236					-0.03792601212808222
TSPNYVDG	8	Unmodified	_TSPNYVDG_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	HCT116MG_D190212_S3	3	852.373046875	1	852.373389	851.366112	0.70549	0.00060134	-1.1472	-0.00097786	-0.44173	-0.00037652	852.3722311909266	23.322	0.31273	23.283	23.135	23.448	-0.03968					8	5	2	0	0	0	0.41924	1	8246	8246		48.346	0	1	2807500	+		34524	11982	21897	22017	33237	33237					-0.06551633195658724
TSPPARPHSP	10	Unmodified	_TSPPARPHSP_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MSMS	HCT116MG_D190212_S4	4	523.7483520507812	2	523.772522	1045.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.219	1	22.971	22.471	23.471	-0.24775								0	0	0	0.90475	1	8118	8118		14.838	1.7958	1				34525	6487	21898	22018	33238	33238					0.009548040149411463
TSPPATYLEC	10	Unmodified	_TSPPATYLEC_					0	0	0			REV__NOTCH2|p.V1697Gfs*9|1|0.37|ENSG00000134250|chr1:119922359-119922360|-/C|frameshift_variant	REV__NOTCH2|p.V1697Gfs*9|1|0.37|ENSG00000134250|chr1:119922359-119922360|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	541.309326171875	2	541.247157	1080.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.193	1	18.269	17.769	18.769	0.076334								0	0	0	0.83705	1	6163	6163		24.021	0	1		+		34526	12048	21899	22019	33239	33239					-0.0572590614492583
TSPPERTRY	9	Unmodified	_TSPPERTRY_					0	0	0		nc|ENSG00000149295|P14416-2|DRD2;ENSG00000149295|ENST00000362072|DRD2;nc|ENSG00000149295|P14416-3|DRD2;DRD2|p.P297H|1|0.41|ENSG00000149295|chr11:113412804-113412804|G/T|missense_variant	nc|ENSG00000149295|P14416-2|DRD2	nc|ENSG00000149295|P14416-2|DRD2	MULTI-MSMS	HCT116MG_D190212_S4	4	553.7826538085938	2	553.783087	1105.55162	0.45308	0.00025091	-0.50977	-0.0002823	-0.056694	-3.1396E-05	553.782980064327	20.544	0.72781	20.342	19.729	20.456	-0.20133					40	13	4	0	0	0	0.19461	1	6856	6856		41.84	5.3334	1	21963000			34527	4053	21900	22020	33240	33240					0.0030676932381084043
TSPPERTRY	9	Unmodified	_TSPPERTRY_					0	0	0		nc|ENSG00000149295|P14416-2|DRD2;ENSG00000149295|ENST00000362072|DRD2;nc|ENSG00000149295|P14416-3|DRD2;DRD2|p.P297H|1|0.41|ENSG00000149295|chr11:113412804-113412804|G/T|missense_variant	nc|ENSG00000149295|P14416-2|DRD2	nc|ENSG00000149295|P14416-2|DRD2	MSMS	HCT116MG_D190212_S4	4	553.7832641601562	2	553.783087	1105.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.907	1	22.67	22.17	23.17	-0.23758								0	0	0	0.67173	1	7994	7994		20.454	0.039092	1				34528	4053	21900	22020	33241	33241					0.0030676932381084043
TSPPKSGTH	9	Unmodified	_TSPPKSGTH_					0	0	0		SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1;SERAC1|p.V77Mfs*7|1|0.2|ENSG00000122335|chr6:158150489-158150490|-/AT|frameshift_variant;nc|ENSG00000122335|Q96JX3-3|SERAC1;SERAC1|p.L193Sfs*16|1|0.42|ENSG00000122335|chr6:158144331-158144332|-/A|frameshift_variant	SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant	SERAC1|p.H383Afs*11|1|0.03|ENSG00000122335|chr6:158120445-158120446|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	456.6756896972656	2	456.232699	910.450845	0.4547	0.00020745	-0.45815	-0.00020903	-0.003452	-1.5749E-06	456.2324694334834	27.575	0.26011	27.387	27.205	27.465	-0.18847					7	4	2	0	0	0	0.49914	1	9912	9912		16.942	0	1	15283000			34529	2758	21901	22021	33242	33242					-0.007962626590369837
TSPPNPAT	8	Unmodified	_TSPPNPAT_					0	0	0		nc|ENSG00000182257|Q9NV39|PRR34	nc|ENSG00000182257|Q9NV39|PRR34	nc|ENSG00000182257|Q9NV39|PRR34	MULTI-MSMS	HCT116MG_D190212_S4	4	784.3842163085938	1	784.383559	783.376283	0.37963	0.00029778	0.6345	0.00049769	1.0141	0.00079547	784.3839473565209	16.852	0.41545	16.686	16.452	16.867	-0.16664					12	7	2	0	0	0	0.74206	1	5548	5548		18.135	1.1927	1	3663900			34530	9572	21902	22022	33243	33243					-0.024070254704270155
TSPPPLLSWPT	11	Unmodified	_TSPPPLLSWPT_					0	0	0		ENST00000371626.8_1_1:52520892-52521162:-|nuORF	ENST00000371626.8_1_1:52520892-52521162:-|nuORF	ENST00000371626.8_1_1:52520892-52521162:-|nuORF	MSMS	HCT116MG_D190212_S3	3	598.3201904296875	2	598.321514	1194.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.316	1	22.317	21.817	22.817	0.00074577								0	0	0	0.94538	1	7823	7823		8.7454	0	1				34531	7442	21903	22023	33244	33244					0.03894567820270822
TSPPPQQQQQQ	11	Unmodified	_TSPPPQQQQQQ_					0	0	0			REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF	REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	633.8074951171875	2	633.807291	1265.60003	0.45448	0.00028805	-0.16841	-0.00010674	0.28607	0.00018131	633.8071477157711	22.19	0.82701	22.191	21.99	22.817	0.00074387					37	15	3	0	0	0	0.69464	1	7979	7979		23.79	6.6769	1	9231100	+		34532	11301	21904	22024	33245	33245					-0.02214781826955914
TSPPPQQQQQQ	11	Unmodified	_TSPPPQQQQQQ_					0	0	0			REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF	REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	633.807373046875	2	633.807291	1265.60003	0.34396	0.00021801	-0.09916	-6.2849E-05	0.2448	0.00015516	633.8074200137178	22.515	1.3036	22.285	21.777	23.081	-0.23044					50	24	3	0	0	0	0.71182	1	7962	7962		17.443	6.6431	1	7635300	+		34533	11301	21904	22024	33246	33246					-0.02214781826955914
TSPPPYHPPA	10	Unmodified	_TSPPPYHPPA_					0	0	0			REV__ENSG00000160685|ENST00000535420|ZBTB7B	REV__ENSG00000160685|ENST00000535420|ZBTB7B	MSMS	HCT116MG_D190212_S4	4	532.265869140625	2	532.263999	1062.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.211	1	25.918	25.418	26.418	-0.29322								0	0	0	0.92607	1	9326	9326		10.074	1.4806	1		+		34534	12838	21905	22025	33247	33247					-0.015311165908542534
TSPPQQPQPQS	11	Unmodified	_TSPPQQPQPQS_					0	0	0			REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	REV__CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	597.791015625	2	597.791109	1193.56767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.12	1	19.189	18.689	19.689	0.069159								0	0	0	0.79559	1	6537	6537		33.445	3.6043	1		+		34535	10174	21906	22026	33248	33248					-0.021375692299670845
TSPPRRIRH	9	Unmodified	_TSPPRRIRH_					0	0	0		nc|ENSG00000137656|Q9BRD0-2|BUD13;ENSG00000137656|ENST00000260210|BUD13	nc|ENSG00000137656|Q9BRD0-2|BUD13	nc|ENSG00000137656|Q9BRD0-2|BUD13	MSMS	HCT116MG_D190212_S4	4	560.3280029296875	2	560.328331	1118.64211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.06	1	31.685	31.185	32.185	-0.37529								0	0	0	0.768	1	11661	11661		7.9102	0.62092	1				34536	3493	21907	22027	33249	33249					0.08753283162718617
TSPPSPHTSDP	11	Unmodified	_TSPPSPHTSDP_					0	0	0			REV__ENSG00000236396|ENST00000588001|SLC35G4	REV__ENSG00000236396|ENST00000588001|SLC35G4	MULTI-SECPEP	HCT116MG_D190212_S3	3	561.73291015625	2	561.756735	1121.49892	0.33754	0.00018962	-4.463	-0.0025071	-4.1255	-0.0023175	562.2544143042325	23.096	0.20856	23.057	22.979	23.187	-0.03968					5	3	2	0	0	0	0.35748	1	8121	8121		8.1555	0	1	1392100	+		34537	14336	21908	22028	33250	33250					-0.056972335296677556
TSPPTYRPQ	9	Unmodified	_TSPPTYRPQ_					0	0	0		ENST00000369102.5_2_1:150240920-150244722:+|nuORF	ENST00000369102.5_2_1:150240920-150244722:+|nuORF	ENST00000369102.5_2_1:150240920-150244722:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	523.266845703125	2	523.766906	1045.51926	0.20626	0.00010803	0.88847	0.00046535	1.0947	0.00057338	523.7674655502285	16.958	0.83246	17.042	16.496	17.329	0.084467					20	15	2	0	0	0	0.25874	1	5695	5695		7.2892	0	1	1153700			34538	7410	21909	22029	33251	33251					-0.0016801807919364364
TSPPWTTDTV	10	Unmodified	_TSPPWTTDTV_					0	0	0			REV__POM121L2|p.P496Qfs*17|1|0.14|ENSG00000158553|chr6:27310684-27310684|G/-|frameshift_variant	REV__POM121L2|p.P496Qfs*17|1|0.14|ENSG00000158553|chr6:27310684-27310684|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	552.7657470703125	2	552.764029	1103.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.082	1	23.824	23.324	24.324	-0.25816								0	0	0	0.90475	1	8466	8466		14.838	1.7958	1		+		34539	12787	21910	22030	33252	33252					-0.034111613815412056
TSPQAEAPHP	10	Unmodified	_TSPQAEAPHP_					0	0	0		ENST00000329082.11_1_15:93587771-93587963:-|nuORF	ENST00000329082.11_1_15:93587771-93587963:-|nuORF	ENST00000329082.11_1_15:93587771-93587963:-|nuORF	MSMS	HCT116MG_D190212_S3	3	517.7488403320312	2	517.748713	1033.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.714	1	18.783	18.283	19.283	0.069159								0	0	0	0.49924	1	6373	6373		47.749	11.622	1				34540	7153	21911	22031	33253	33253					-0.03252894975912568
TSPQAEAPHP	10	Unmodified	_TSPQAEAPHP_					0	0	0		ENST00000329082.11_1_15:93587771-93587963:-|nuORF	ENST00000329082.11_1_15:93587771-93587963:-|nuORF	ENST00000329082.11_1_15:93587771-93587963:-|nuORF	MSMS	HCT116MG_D190212_S4	4	517.7485961914062	2	517.748713	1033.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.934	1	18.747	18.247	19.247	-0.18674								0	0	0	0.34824	1	6388	6388		56.177	24.909	1				34541	7153	21911	22031	33254	33254					-0.03252894975912568
TSPQCWVQYLW	11	Unmodified	_TSPQCWVQYLW_					0	0	0		ENST00000580193.1_1_18:14630000-14630792:-|nuORF;ENST00000444901.1_1_21:14899938-14900730:+|nuORF	ENST00000580193.1_1_18:14630000-14630792:-|nuORF	ENST00000580193.1_1_18:14630000-14630792:-|nuORF	MSMS	HCT116MG_D190212_S3	3	705.34619140625	2	705.82918	1409.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.996	1	17.081	16.581	17.581	0.084467								0	0	0	0.94012	1	5680	5680		11.495	4.8643	1				34542	7946	21912	22032	33255	33255					-0.04462888654188646
TSPQDFPFYYL	11	Unmodified	_TSPQDFPFYYL_					0	0	0		ENST00000484339.1_1_1:26349695-26357853:+|nuORF;ENSG00000158008|ENST00000374280|EXTL1	ENST00000484339.1_1_1:26349695-26357853:+|nuORF	ENST00000484339.1_1_1:26349695-26357853:+|nuORF	MSMS	HCT116MG_D190212_S3	3	689.3206176757812	2	689.321711	1376.62887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.676	1	30.417	29.917	30.917	-0.25908								0	0	0	0.9387	1	11179	11179		12.241	4.6317	1				34543	4353	21913	22033	33256	33256					-0.04438057250513339
TSPQEDEFARF	11	Unmodified	_TSPQEDEFARF_					0	0	0			REV__ENSG00000156113|ENST00000286628|KCNMA1	REV__ENSG00000156113|ENST00000286628|KCNMA1	MSMS	HCT116MG_D190212_S3	3	663.8042602539062	2	663.801674	1325.58879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.792	1	22.773	22.273	23.273	-0.018869								0	0	0	0.9387	1	8015	8015		12.241	4.6317	1		+		34544	12718	21914	22034	33257	33257					-0.060976039211027455
TSPQHEEIQ	9	Unmodified	_TSPQHEEIQ_					0	0	0		ENST00000228928.11_1_12:113407780-113407936:+|nuORF	ENST00000228928.11_1_12:113407780-113407936:+|nuORF	ENST00000228928.11_1_12:113407780-113407936:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	534.76416015625	2	534.751453	1067.48835	0.40428	0.00021619	0.45389	0.00024272	0.85817	0.00045891	534.7516629691688	16.074	0.7799	16.159	15.925	16.705	0.085424					18	14	2	0	0	0	0.23782	1	5353	5353		16.149	0	1	5014200			34545	6765	21915	22035	33258	33258					-0.042692161840932386
TSPQHQQPRQ	10	Unmodified	_TSPQHQQPRQ_					0	0	0		ENST00000455600.1_1_9:35538640-35538937:+|nuORF	ENST00000455600.1_1_9:35538640-35538937:+|nuORF	ENST00000455600.1_1_9:35538640-35538937:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	603.80224609375	2	603.802343	1205.59013	0.71907	0.00043417	-0.38981	-0.00023537	0.32925	0.0001988	603.8021309027106	17.211	0.3652	16.862	16.717	17.082	-0.34933					11	6	2	0	0	0	0.60826	1	5863	5863		27.629	10.186	1	7703800			34546	8019	21916	22036	33259	33259					-0.004439250416680807
TSPQHQQPRQ	10	Unmodified	_TSPQHQQPRQ_					0	0	0		ENST00000455600.1_1_9:35538640-35538937:+|nuORF	ENST00000455600.1_1_9:35538640-35538937:+|nuORF	ENST00000455600.1_1_9:35538640-35538937:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	603.7896728515625	2	603.802343	1205.59013	0.47981	0.00028971	0.085768	5.1787E-05	0.56558	0.0003415	603.8023719629316	16.23	0.57193	16.315	16.081	16.653	0.085424					26	10	3	0	0	0	0.68623	1	5438	5438		21.537	5.3879	1	14851000			34547	8019	21916	22036	33260	33260					-0.004439250416680807
TSPQKLSSQ	9	Unmodified	_TSPQKLSSQ_					0	0	0			REV__nc|ENSG00000057657|O75626-3|PRDM1	REV__nc|ENSG00000057657|O75626-3|PRDM1	MSMS	HCT116MG_D190212_S4	4	488.2590637207031	2	488.258914	974.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.595	1	19.401	18.901	19.901	-0.19367								0	0	0	0.74436	1	6656	6656		16.942	2.3606	1		+		34548	10657	21917	22037	33261	33261					0.01500275683918062
TSPQPPPQSPP	11	Unmodified	_TSPQPPPQSPP_					0	0	0			REV__ENSG00000236383|ENST00000636331|CCDC200	REV__ENSG00000236383|ENST00000636331|CCDC200	MULTI-MSMS	HCT116MG_D190212_S3	3	567.2884521484375	2	566.785296	1131.55604	0.54311	0.00030783	0.46958	0.00026615	1.0127	0.00057398	566.7850780988441	26.43	0.57266	26.281	26.098	26.671	-0.14924					22	10	3	0	0	0	0.69749	1	9627	9627		22.736	1.1993	1	14240000	+		34549	14335	21918	22038	33262	33262					-0.004477662532735849
TSPQPPQP	8	Unmodified	_TSPQPPQP_					0	0	0			REV__FARP1|p.P874Lfs*20|1|0.24|ENSG00000152767|chr13:98440222-98440222|C/-|frameshift_variant	REV__FARP1|p.P874Lfs*20|1|0.24|ENSG00000152767|chr13:98440222-98440222|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	426.2160949707031	2	426.216517	850.418482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.579	1	22.342	21.842	22.842	-0.23758								0	0	0	0.68119	1	7862	7862		32.117	1.8922	1		+		34550	12636	21919	22039	33263	33263					-0.012710500620528364
TSPQPQEPQ	9	Unmodified	_TSPQPQEPQ_					0	0	0			REV__nc|ENSG00000089737|Q9GZR7-2|DDX24	REV__nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MSMS	HCT116MG_D190212_S4	4	506.2402038574219	2	506.240721	1010.46689	-0.05521	-2.7949E-05	0.35979	0.00018214	0.30458	0.00015419	506.2408859004835	17.754	0.67531	17.579	17.168	17.844	-0.17501					19	12	2	0	0	0	0.26536	1	5889	5889		34.402	1.616	1	1381500	+		34551	10975	21920	22040	33264	33264					-0.03792601212808222
TSPQPQEPQ	9	Unmodified	_TSPQPQEPQ_					0	0	0			REV__nc|ENSG00000089737|Q9GZR7-2|DDX24	REV__nc|ENSG00000089737|Q9GZR7-2|DDX24	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	506.240721	1010.46689	-0.05521	-2.7949E-05	0.35979	0.00018214	0.30458	0.00015419	506.2408859004835	17.754	0.67531	17.579	17.168	17.844	-0.17501	-0.042196	-3.8841E-06	NaN	34.402	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1381500	+		34552	10975	21920	22040							-0.03792601212808222
TSPQPTPPPP	10	Unmodified	_TSPQPTPPPP_					0	0	0			REV__ENST00000436747.5_1_2:242688429-242688768:+|nuORF	REV__ENST00000436747.5_1_2:242688429-242688768:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	509.23541259765625	2	509.763832	1017.51311	0.3017	0.0001538	1.0181	0.00051901	1.3198	0.00067281	509.76405252857637	33.959	0.20764	33.575	33.466	33.673	-0.38426					5	3	2	0	0	0	0.2912	1	12376	12376		6.7232	0	1	940470	+		34553	15629	21921	22041	33265	33265					0.0050546368928507945
TSPQQIQDQF	10	Unmodified	_TSPQQIQDQF_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MSMS	HCT116MG_D190212_S3	3	596.2863159179688	2	596.28566	1190.55677	0.62728	0.00037404	0.092026	5.4874E-05	0.71931	0.00042891	596.2861674909944	27.055	0.46887	26.885	26.599	27.068	-0.16933					13	8	2	0	0	0	0.6277	1	9767	9767		26.268	2.4784	1	4019800	+		34554	10116	21922	22042	33266	33266					-0.03088971604256585
TSPQQIQDQF	10	Unmodified	_TSPQQIQDQF_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	596.28566	1190.55677	0.62728	0.00037404	0.092026	5.4874E-05	0.71931	0.00042891	596.2861674909944	27.055	0.46887	26.885	26.599	27.068	-0.16933	0	0	NaN	26.268	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4019800	+		34555	10116	21922	22042							-0.03088971604256585
TSPQQTPTGP	10	Unmodified	_TSPQQTPTGP_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	HCT116MG_D190212_S3	3	507.25701904296875	2	507.248546	1012.48254	0.35497	0.00018006	-0.44042	-0.0002234	-0.085451	-4.3345E-05	507.2482495648046	25.042	0.72899	24.936	24.683	25.412	-0.10618					23	13	2	0	0	0	0.75427	1	8866	8866		15.847	1.9411	1	7298900	+		34556	10293	21923	22043	33267	33267					-0.02320314695759862
TSPQSDMMREQ	11	Unmodified	_TSPQSDMMREQ_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000486937.5_1_21:47655184-47666418:-|nuORF;nc|ENSG00000160294|O60318-2|MCM3AP;ENST00000467026.5_1_21:47655184-47679082:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MSMS	HCT116MG_D190212_S4	4	655.3051147460938	2	655.279194	1308.54384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.373	1	19.186	18.686	19.686	-0.18674								0	0	0	0.94012	1	6566	6566		11.495	2.1116	1				34557	4443	21924	22044	33268	33268					-0.09809494050273315
TSPQSMLQGPQ	11	Unmodified	_TSPQSMLQGPQ_					0	0	0			REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MSMS	HCT116MG_D190212_S4	4	587.281005859375	2	587.282063	1172.54957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.592	1	21.374	20.874	21.874	-0.21832								0	0	0	0.94145	1	7463	7463		10.8	1.4164	1		+		34558	11211	21925	22045	33269	33269					-0.029800274763147172
TSPQSMLQGPQ	11	Unmodified	_TSPQSMLQGPQ_					0	0	0			REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MSMS	HCT116MG_D190212_S4	4	587.2804565429688	2	587.282063	1172.54957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.703	1	21.485	20.985	21.985	-0.21832								0	0	0	0.79559	1	7508	7508		33.445	2.1766	1		+		34559	11211	21925	22045	33270	33270					-0.029800274763147172
TSPQSTSVQAK	11	Unmodified	_TSPQSTSVQAK_					0	0	0		nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-2|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	nc|ENSG00000070814|Q13428-6|TCOF1	MSMS	HCT116MG_D190212_S3	3	567.2936401367188	2	567.293485	1132.57242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.436	1	20.485	19.985	20.985	0.048107								0	0	0	0.9387	1	7068	7068		12.241	0.60036	1				34560	1245	21926	22046	33271	33271					0.011433149128151854
TSPQTPAAPQP	11	Unmodified	_TSPQTPAAPQP_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-SECPEP	HCT116MG_D190212_S4	4	547.7593383789062	2	547.77747	1093.54039	0.48443	0.00026536	-0.42803	-0.00023446	0.056399	3.0894E-05	547.7772709331094	26.664	0.41573	26.363	26.13	26.545	-0.30087					10	7	2	0	0	0	0.32753	1	9581	9581		27.629	16.805	1	2349100	+		34561	10293	21927	22047	33272	33272					-0.0026405277033063612
TSPREIDIYE	10	Unmodified	_TSPREIDIYE_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MSMS	HCT116MG_D190212_S4	4	611.798828125	2	611.801143	1221.58773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.314	1	19.127	18.627	19.627	-0.18674								0	0	0	0.93202	1	6542	6542		8.7454	1.6437	1		+		34562	12008	21928	22048	33273	33273					-0.014198182900145184
TSPRNWCIKMV	11	Unmodified	_TSPRNWCIKMV_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-MSMS	HCT116MG_D190212_S3	3	667.8396606445312	2	667.839025	1333.6635	0.74855	0.00049991	-1.0234	-0.00068349	-0.27488	-0.00018358	667.8383129056331	31.57	0.7825	31.299	30.856	31.638	-0.27028					28	14	3	0	0	0	0.72373	1	11468	11468		13.042	0.80181	1	9553100			34563	1692	21929	22049	33274	33274					0.010011640848915704
TSPRQQHGG	9	Unmodified	_TSPRQQHGG_					0	0	0		ENST00000529587.1_1_11:9806704-9806878:-|nuORF	ENST00000529587.1_1_11:9806704-9806878:-|nuORF	ENST00000529587.1_1_11:9806704-9806878:-|nuORF	MSMS	HCT116MG_D190212_S3	3	484.24017333984375	2	484.238847	966.463141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.999	1	22	21.5	22.5	0.00074577								0	0	0	0.64498	1	7695	7695		21.747	9.2151	1				34564	8609	21930	22050	33275	33275					-0.0214322619599443
TSPRRPPQ	8	Unmodified	_TSPRRPPQ_					0	0	0			REV__SNAPC2|p.Q267Sfs*38|1|0.64|ENSG00000104976|chr19:7922553-7922553|C/-|frameshift_variant	REV__SNAPC2|p.Q267Sfs*38|1|0.64|ENSG00000104976|chr19:7922553-7922553|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	469.76171875	2	469.761958	937.509363	-0.45958	-0.00021589	0.39722	0.0001866	-0.062366	-2.9297E-05	469.7620341416589	16.626	0.38451	16.46	16.171	16.556	-0.16664					12	7	2	0	0	0	0.6854	1	5449	5449		24.674	5.2349	1	1555300	+		34565	17535	21931	22051	33276	33276					0.03810838706078812
TSPRRSGLCW	10	Unmodified	_TSPRRSGLCW_					0	0	0		ENST00000587557.5_1_19:9449881-9449959:+|nuORF	ENST00000587557.5_1_19:9449881-9449959:+|nuORF	ENST00000587557.5_1_19:9449881-9449959:+|nuORF	MSMS	HCT116MG_D190212_S4	4	581.7940673828125	2	581.792932	1161.57131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.936	1	28.596	28.096	29.096	-0.34059								0	0	0	0.90291	1	10428	10428		15.248	0.41021	1				34566	9008	21932	22052	33277	33277					-0.00301177937058128
TSPRVPLSAYE	11	Unmodified	_TSPRVPLSAYE_					0	0	0		ENST00000574593.1_1_16:2817540-2819884:+|nuORF;SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2	ENST00000574593.1_1_16:2817540-2819884:+|nuORF	ENST00000574593.1_1_16:2817540-2819884:+|nuORF	MSMS	HCT116MG_D190212_S3	3	610.3196411132812	2	610.319502	1218.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.926	1	23.864	23.364	24.364	-0.061449								0	0	0	0.93717	1	8472	8472		13.042	0.80181	1				34567	4967	21933	22053	33278	33278					0.023884783265430087
TSPRVPLSAYE	11	Unmodified	_TSPRVPLSAYE_					0	0	0		ENST00000574593.1_1_16:2817540-2819884:+|nuORF;SRRM2|p.P2670Lfs*13|1|0.08|ENSG00000167978|chr16:2769268-2769268|C/-|frameshift_variant;ENSG00000167978|ENST00000301740|SRRM2	ENST00000574593.1_1_16:2817540-2819884:+|nuORF	ENST00000574593.1_1_16:2817540-2819884:+|nuORF	MSMS	HCT116MG_D190212_S4	4	610.1843872070312	2	610.319502	1218.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.014	1	23.756	23.256	24.256	-0.25816								0	0	0	0.94538	1	8439	8439		8.7454	1.1365	1				34568	4967	21933	22053	33279	33279					0.023884783265430087
TSPSEELPKDA	11	Unmodified	_TSPSEELPKDA_					0	0	0			REV__STK10|p.T526Pfs*15|3|0.11|ENSG00000072786|chr5:172090341-172090341|T/-|frameshift_variant	REV__STK10|p.T526Pfs*15|3|0.11|ENSG00000072786|chr5:172090341-172090341|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	587.2864379882812	2	587.285325	1172.5561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.054	1	30.69	30.19	31.19	-0.36416								0	0	0	0.93717	1	11255	11255		13.042	0	1		+		34569	10781	21934	22054	33280	33280					-0.023278110439377997
TSPSHQPSGLY	11	Unmodified	_TSPSHQPSGLY_					0	0	0			REV__ENST00000438498.2_1_11:113661703-113661895:+|nuORF	REV__ENST00000438498.2_1_11:113661703-113661895:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	587.2803955078125	2	587.280377	1172.5462	0.36981	0.00021718	-0.10537	-6.1881E-05	0.26444	0.0001553	587.2801482853141	22.963	1.1483	22.726	22.133	23.282	-0.23758					26	21	2	0	0	0	0.70377	1	7993	7993		20.415	0	1	1717200	+		34570	11872	21935	22055	33281	33281					-0.03316954258639271
TSPSLCLVCE	10	Unmodified	_TSPSLCLVCE_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-MSMS	HCT116MG_D190212_S3	3	526.2440185546875	2	526.24356	1050.47257	0.28648	0.00015076	0.83204	0.00043786	1.1185	0.00058862	526.2439635297706	16.663	1.1964	16.749	15.977	17.173	0.085096					32	22	2	0	0	0	0.71349	1	5337	5337		19.257	0	1	2327800			34571	6571	21936	22056	33282	33282					-0.05064962017013386
TSPSPFSSTVA	11	Unmodified	_TSPSPFSSTVA_					0	0	0			REV__ENSG00000166507|ENST00000309979|NDST2	REV__ENSG00000166507|ENST00000309979|NDST2	MSMS	HCT116MG_D190212_S4	4	540.765625	2	540.764029	1079.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.531	1	21.313	20.813	21.813	-0.21832								0	0	0	0.91433	1	7438	7438		18.146	0	1		+		34572	13112	21937	22057	33283	33283					-0.023071613815318415
TSPSPYAFSP	10	Unmodified	_TSPSPYAFSP_					0	0	0		ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	MSMS	HCT116MG_D190212_S4	4	527.2459716796875	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.846	1	29.493	28.993	29.993	-0.3525								0	0	0	0.90892	1	10795	10795		13.906	2.2658	1				34573	5867	21938	22058	33284	33284					-0.042665290646709764
TSPSQVDHSPL	11	Unmodified	_TSPSQVDHSPL_					0	0	0		ENST00000446176.6_1_9:132650555-132650786:-|nuORF	ENST00000446176.6_1_9:132650555-132650786:-|nuORF	ENST00000446176.6_1_9:132650555-132650786:-|nuORF	MSMS	HCT116MG_D190212_S4	4	584.28564453125	2	584.28566	1166.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.9	1	32.519	32.019	33.019	-0.38075								0	0	0	0.80071	1	12001	12001		32.786	1.5173	1				34574	7953	21939	22059	33285	33285					-0.019849716042244836
TSPSRFIR	8	Unmodified	_TSPSRFIR_					0	0	0		RGS9|p.A508T|1|0.16|ENSG00000108370|chr17:65225116-65225116|G/A|missense_variant	RGS9|p.A508T|1|0.16|ENSG00000108370|chr17:65225116-65225116|G/A|missense_variant	RGS9|p.A508T|1|0.16|ENSG00000108370|chr17:65225116-65225116|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	482.2718200683594	2	482.272158	962.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.867	1	21.867	21.367	22.367	0.00074577								0	0	0	0.85589	1	7641	7641		18.135	0	1				34575	18104	21940	22060	33286	33286					0.04700009365888036
TSPSRSMRRSS	11	Unmodified	_TSPSRSMRRSS_					0	0	0		ENST00000536649.5_1_19:14208168-14208237:-|nuORF	ENST00000536649.5_1_19:14208168-14208237:-|nuORF	ENST00000536649.5_1_19:14208168-14208237:-|nuORF	MSMS	HCT116MG_D190212_S2	2	626.3142700195312	2	626.31476	1250.61497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.869	1	21.484	20.984	21.984	-0.38503								0	0	0	0.93717	1	7719	7719		13.042	0.80181	1				34576	8665	21941	22061	33287	33287					-0.0003161323061249277
TSPSRSMRRSS	11	Unmodified	_TSPSRSMRRSS_					0	0	0		ENST00000536649.5_1_19:14208168-14208237:-|nuORF	ENST00000536649.5_1_19:14208168-14208237:-|nuORF	ENST00000536649.5_1_19:14208168-14208237:-|nuORF	MSMS	HCT116MG_D190212_S4	4	626.314697265625	2	626.31476	1250.61497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.595	1	18.415	17.915	18.915	-0.18052								0	0	0	0.94538	1	6252	6252		8.7454	0	1				34577	8665	21941	22061	33288	33288					-0.0003161323061249277
TSPSSAPEPP	10	Unmodified	_TSPSSAPEPP_					0	0	0		ENST00000175756.9_1_2:131131080-131131209:+|nuORF	ENST00000175756.9_1_2:131131080-131131209:+|nuORF	ENST00000175756.9_1_2:131131080-131131209:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	485.22955322265625	2	485.229822	968.445091	-0.2148	-0.00010423	0.055618	2.6988E-05	-0.15918	-7.7241E-05	485.2297119364844	17.785	0.31173	17.61	17.48	17.792	-0.17501					6	5	2	0	0	0	0.64004	1	5953	5953		25.399	0	1	2586400			34578	6717	21942	22062	33289	33289					-0.04039405961384546
TSPTIGFEK	9	Unmodified	_TSPTIGFEK_					0	0	0			REV__ENSG00000164296|ENST00000296736|TIGD6	REV__ENSG00000164296|ENST00000296736|TIGD6	MULTI-MSMS	HCT116MG_D190212_S4	4	490.2582702636719	2	490.258382	978.502212	0.019123	9.3753E-06	0.07269	3.5637E-05	0.091814	4.5012E-05	490.2582728116475	19.446	0.31197	19.259	19.129	19.441	-0.18674					6	5	2	0	0	0	0.35128	1	6611	6611		25.399	4.9457	1	2425100	+		34579	12995	21943	22063	33290	33290					0.012100613150096251
TSPTPTKEQP	10	Unmodified	_TSPTPTKEQP_					0	0	0		RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant;ENSG00000143344|ENST00000360851|RGL1;nc|ENSG00000143344|Q9NZL6-2|RGL1	RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant	RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	543.5816040039062	2	543.277303	1084.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.819	1	19.626	19.126	20.126	-0.19367								0	0	0	0.83705	1	6746	6746		24.021	1.2843	1				34580	3801	21944	22064	33291	33291					0.001165275098173879
TSPTPTKEQP	10	Unmodified	_TSPTPTKEQP_					0	0	0		RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant;ENSG00000143344|ENST00000360851|RGL1;nc|ENSG00000143344|Q9NZL6-2|RGL1	RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant	RGL1|p.K583Sfs*25|1|0.84|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	543.2777099609375	2	543.277303	1084.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.636	1	25.346	24.846	25.846	-0.29022								0	0	0	0.83705	1	9094	9094		24.021	1.2843	1				34581	3801	21944	22064	33292	33292					0.001165275098173879
TSPTRQTGYP	10	Unmodified	_TSPTRQTGYP_					0	0	0			REV__nc|ENSG00000197136|Q9H6A9-2|PCNX3	REV__nc|ENSG00000197136|Q9H6A9-2|PCNX3	MSMS	HCT116MG_D190212_S3	3	554.2750854492188	2	554.275095	1106.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.102	1	16.188	15.688	16.688	0.085424								0	0	0	0.92272	1	5319	5319		10.824	0	1		+		34582	14058	21945	22065	33293	33293					-0.013369369130941777
TSPTWSKSSP	10	Unmodified	_TSPTWSKSSP_					0	0	0		TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant	TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant	TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	539.2646484375	2	539.264196	1076.51384	0.37736	0.0002035	-0.12988	-7.0041E-05	0.24748	0.00013346	539.2640653997375	26.648	0.41573	26.347	26.13	26.545	-0.30087					12	7	2	0	0	0	0.58749	1	9519	9519		29.082	0	1	3825500			34583	18669	21946	22066	33294	33294					-0.021357416616638147
TSPTWSKSSP	10	Unmodified	_TSPTWSKSSP_					0	0	0		TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant	TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant	TSHZ2|p.S772Afs*48|1|0.37|ENSG00000182463|chr20:53255769-53255769|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	539.264196	1076.51384	0.56571	0.00030507	-0.082452	-4.4463E-05	0.48326	0.0002606	539.2640423582872	26.638	0.41631	26.489	26.203	26.619	-0.14924	0.071073	2.52E-05	NaN	29.082	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4990300			34584	18669	21946	22066							-0.021357416616638147
TSPVAPPQTPD	11	Unmodified	_TSPVAPPQTPD_					0	0	0			REV__ENST00000606994.1_1_5:32174612-32175047:+|nuORF	REV__ENST00000606994.1_1_5:32174612-32175047:+|nuORF	MSMS	HCT116MG_D190212_S3	3	555.2771606445312	2	555.277303	1108.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.698	1	21.716	21.216	22.216	0.018446								0	0	0	0.93717	1	7574	7574		13.042	0	1		+		34585	16775	21947	22067	33295	33295					-0.009874724901919762
TSPVDDFRQP	10	Unmodified	_TSPVDDFRQP_					0	0	0		ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN;nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	ENST00000510666.1_1_5:68840710-68849495:+|nuORF	MSMS	HCT116MG_D190212_S4	4	581.281005859375	2	581.280377	1160.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.023	1	26.712	26.212	27.212	-0.3114								0	0	0	0.92607	1	9655	9655		10.074	0	1				34586	6178	21948	22068	33296	33296					-0.027649542586686948
TSPVGSPGPL	10	Unmodified	_TSPVGSPGPL_					0	0	0		ENST00000484423.5_1_1:145576054-145578613:+|nuORF;PIAS3|p.L222Cfs*56|1|0.24|ENSG00000131788|chr1:145855741-145855741|G/-|frameshift_variant;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000484423.5_1_1:145576054-145578613:+|nuORF	ENST00000484423.5_1_1:145576054-145578613:+|nuORF	MSMS	HCT116MG_D190212_S4	4	456.2440185546875	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.972	1	35.586	35.086	36.086	-0.38568								0	0	0	0.92272	1	13146	13146		10.824	0	1				34587	3157	21949	22069	33297	33297					0.017177921435177268
TSPVQRNQGK	10	Unmodified	_TSPVQRNQGK_					0	0	0			REV__ENST00000368431.7_1_1:154955852-154959962:+|nuORF	REV__ENST00000368431.7_1_1:154955852-154959962:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	557.8016357421875	2	557.801811	1113.58907	0.070624	3.9394E-05	0.028729	1.6025E-05	0.099353	5.5419E-05	557.8017222281559	17.502	0.15585	17.584	17.482	17.638	0.081356					4	2	2	0	0	0	0.75066	1	5901	5901		16.149	2.5342	1	2687700	+		34588	15132	21950	22070	33298	33298					0.03681860589426833
TSPVRLIHG	9	Unmodified	_TSPVRLIHG_					0	0	0		HEPACAM|p.D198Tfs*57|1|0.2|ENSG00000165478|chr11:124923847-124923847|G/-|frameshift_variant;nc|ENSG00000165478|Q14CZ8-2|HEPACAM;ENSG00000165478|ENST00000298251|HEPACAM	HEPACAM|p.D198Tfs*57|1|0.2|ENSG00000165478|chr11:124923847-124923847|G/-|frameshift_variant	HEPACAM|p.D198Tfs*57|1|0.2|ENSG00000165478|chr11:124923847-124923847|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	490.285888671875	2	490.287808	978.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.048	1	26.879	26.379	27.379	-0.16933								0	0	0	0.768	1	9731	9731		7.9102	0.62092	1				34589	4777	21951	22071	33299	33299					0.07092582399991443
TSPVRLIHG	9	Unmodified	_TSPVRLIHG_					0	0	0		HEPACAM|p.D198Tfs*57|1|0.2|ENSG00000165478|chr11:124923847-124923847|G/-|frameshift_variant;nc|ENSG00000165478|Q14CZ8-2|HEPACAM;ENSG00000165478|ENST00000298251|HEPACAM	HEPACAM|p.D198Tfs*57|1|0.2|ENSG00000165478|chr11:124923847-124923847|G/-|frameshift_variant	HEPACAM|p.D198Tfs*57|1|0.2|ENSG00000165478|chr11:124923847-124923847|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	490.2859802246094	2	490.287808	978.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.851	1	26.54	26.04	27.04	-0.3114								0	0	0	0.768	1	9585	9585		7.9102	0.62092	1				34590	4777	21951	22071	33300	33300					0.07092582399991443
TSPYHSFKPEA	11	Unmodified	_TSPYHSFKPEA_					0	0	0			REV__ENST00000273064.10_1_2:219460738-219461044:+|nuORF	REV__ENST00000273064.10_1_2:219460738-219461044:+|nuORF	MSMS	HCT116MG_D190212_S2	2	632.304443359375	2	632.303852	1262.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.26	1	23.88	23.38	24.38	-0.38003								0	0	0	0.94416	1	8685	8685		9.3831	0	1		+		34591	14703	21952	22072	33301	33301					-0.027640947074814903
TSQEKPDRL	9	Unmodified	_TSQEKPDRL_					0	0	0		ENST00000395443.6_1_3:49067825-49067888:-|nuORF	ENST00000395443.6_1_3:49067825-49067888:-|nuORF	ENST00000395443.6_1_3:49067825-49067888:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	358.8584289550781	3	358.524372	1072.55129	-0.0071884	-2.5772E-06	-0.068956	-2.4723E-05	-0.076145	-2.73E-05	358.8585943996886	18.011	0.2607	18.011	17.88	18.141	0					6	4	2	0	0	0	0.26046	1	6200	6200		4.5289	0.33936	1	3019500			34592	7645	21953	22073	33302	33302					0.017913496039454913
TSQFENGAGP	10	Unmodified	_TSQFENGAGP_					0	0	0			REV__ENST00000564814.1_1_16:58426342-58426453:+|nuORF	REV__ENST00000564814.1_1_16:58426342-58426453:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	504.2246398925781	2	504.225071	1006.43559	0.33287	0.00016784	-0.23827	-0.00012014	0.094599	4.7699E-05	504.22482334683826	18.886	0.57253	18.956	18.563	19.135	0.069159					15	10	2	0	0	0	0.68623	1	6405	6405		21.537	2.28	1	2227700	+		34593	16525	21954	22074	33303	33303					-0.06737174246893574
TSQFENGAGP	10	Unmodified	_TSQFENGAGP_					0	0	0			REV__ENST00000564814.1_1_16:58426342-58426453:+|nuORF	REV__ENST00000564814.1_1_16:58426342-58426453:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	504.2488708496094	2	504.225071	1006.43559	0.21985	0.00011085	0.46693	0.00023544	0.68678	0.00034629	504.22532288348174	19.044	0.88389	18.857	18.401	19.285	-0.18674					21	16	2	0	0	0	0.28843	1	6463	6463		18.146	8.7632	1	1964200	+		34594	16525	21954	22074	33304	33304					-0.06737174246893574
TSQGSPAFQPP	11	Unmodified	_TSQGSPAFQPP_					0	0	0		STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant;STK11|p.P281Rfs*6|1|0.43|ENSG00000118046|chr19:1221315-1221315|C/-|frameshift_variant;ENST00000589152.5_1_19:1206825-1221398:+|nuORF;nc|ENSG00000118046|Q15831-2|STK11;ENSG00000118046|ENST00000326873|STK11	STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant	STK11|p.L282Afs*3|1|0.28|ENSG00000118046|chr19:1221314-1221315|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	559.2718505859375	2	558.769645	1115.52474	0.11409	6.3751E-05	0.49972	0.00027923	0.61382	0.00034298	558.7697775595085	36.368	0.72826	36.067	35.626	36.354	-0.30042					22	13	2	0	0	0	0.69138	1	13431	13431		24.991	2.2547	1	6742700			34595	2596	21955	22075	33305	33305					-0.028403392873769917
TSQIQRLIV	9	Unmodified	_TSQIQRLIV_					0	0	0		ENSG00000117054|ENST00000370841|ACADM;nc|ENSG00000117054|P11310-2|ACADM	ENSG00000117054|ENST00000370841|ACADM	ENSG00000117054|ENST00000370841|ACADM	MSMS	HCT116MG_D190212_S4	4	353.2166442871094	3	353.216991	1056.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.303	1	42.929	42.429	43.429	-0.37433								0	0	0	0.76998	1	15916	15916		0.96228	0	1				34596	2556	21956	22076	33306	33306					0.10309407259978798
TSQLCLLPIGA	11	Unmodified	_TSQLCLLPIGA_					0	0	0			REV__nc|ENSG00000130717|Q9HA47-4|UCK1	REV__nc|ENSG00000130717|Q9HA47-4|UCK1	MSMS	HCT116MG_D190212_S4	4	558.2459106445312	2	558.310092	1114.60563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.15	1	34.764	34.264	35.264	-0.38606								0	0	0	0.94012	1	12863	12863		11.495	0.67078	1		+		34597	17126	21957	22077	33307	33307					0.05291225431165003
TSQLREIDIP	10	Unmodified	_TSQLREIDIP_					0	0	0			REV__nc|ENSG00000123191|P35670-5|ATP7B	REV__nc|ENSG00000123191|P35670-5|ATP7B	MSMS	HCT116MG_D190212_S4	4	586.3199462890625	2	586.319502	1170.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.546	1	25.267	24.767	25.767	-0.27958								0	0	0	0.85631	1	9058	9058		21.537	3.3906	1		+		34598	11758	21958	22078	33308	33308					0.04596478326561737
TSQPGLDRFQ	10	Unmodified	_TSQPGLDRFQ_					0	0	0		ENST00000407417.7_1_1:61542983-61543028:+|nuORF	ENST00000407417.7_1_1:61542983-61543028:+|nuORF	ENST00000407417.7_1_1:61542983-61543028:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	575.2800903320312	2	574.78837	1147.56219	0.3076	0.00017681	0.79696	0.00045808	1.1046	0.00063489	574.7884042732767	16.928	0.26027	17.012	16.86	17.12	0.084467					6	4	2	0	0	0	0.30239	1	5606	5606		12.241	3.4953	1	791190			34599	7719	21959	22079	33309	33309					-0.005692480217703633
TSQQERGQEG	10	Unmodified	_TSQQERGQEG_					0	0	0		RPTN|p.V210*|1|0.08|ENSG00000215853|chr1:152156472-152156472|T/-|frameshift_variant;ENSG00000215853|ENST00000316073|RPTN	RPTN|p.V210*|1|0.08|ENSG00000215853|chr1:152156472-152156472|T/-|frameshift_variant	RPTN|p.V210*|1|0.08|ENSG00000215853|chr1:152156472-152156472|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	560.2697143554688	2	560.254891	1118.49523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.269	1	23.021	22.521	23.521	-0.24775								0	0	0	0.90291	1	8138	8138		15.248	1.3424	1				34600	6455	21960	22080	33310	33310					-0.05927903303540916
TSQSEYDVKY	10	Unmodified	_TSQSEYDVKY_					0	0	0			REV__ENST00000460477.1_1_7:45956706-45960430:-|nuORF	REV__ENST00000460477.1_1_7:45956706-45960430:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	610.2763671875	2	610.2775	1218.54045	0.51419	0.0003138	-2.2963	-0.0014014	-1.7821	-0.0010876	610.2760694432153	29.629	0.25968	29.629	29.529	29.789	0					8	4	2	0	0	0	0.31047	1	10855	10855		49.554	9.597	1	5659500	+		34601	12490	21961	22081	33311	33311					-0.060080975609935194
TSQSPRHWTNK	11	Unmodified	_TSQSPRHWTNK_					0	0	0		MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant;ENSG00000101825|ENST00000217939|MXRA5	MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	671.3359985351562	2	671.33655	1340.65855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.537	1	19.167	18.667	19.667	-0.3695								0	0	0	0.94755	1	6780	6780		7.609	0	1				34602	1808	21962	22082	33312	33312					0.0018431953817525937
TSQSYTCNQE	10	Unmodified	_TSQSYTCNQE_					0	0	0		TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant;TAS1R2|p.N527Kfs*4|1|0.08|ENSG00000179002|chr1:18841739-18841740|-/T|frameshift_variant;ENSG00000179002|ENST00000375371|TAS1R2	TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	TAS1R2|p.L471Cfs*5|1|0.37|ENSG00000179002|chr1:18849397-18849397|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	581.257568359375	2	580.72986	1159.44517	0.40491	0.00023515	1.5063	0.00087473	1.9112	0.0011099	580.7303696351621	19.144	0.31184	19.213	18.927	19.239	0.069159					6	5	2	0	0	0	0.30526	1	6518	6518		6.2058	0	1	1291900			34603	5529	21963	22083	33313	33313					-0.12817774023710626
TSQVRKYQ	8	Unmodified	_TSQVRKYQ_					0	0	0		MMRN1|p.Q839H|1|0.17|ENSG00000138722|chr4:89936197-89936197|A/C|missense_variant;MMRN1|p.G883Afs*3|1|0.34|ENSG00000138722|chr4:89936321-89936321|A/-|frameshift_variant;ENSG00000138722|ENST00000264790|MMRN1	MMRN1|p.Q839H|1|0.17|ENSG00000138722|chr4:89936197-89936197|A/C|missense_variant	MMRN1|p.Q839H|1|0.17|ENSG00000138722|chr4:89936197-89936197|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	505.2751159667969	2	505.274898	1008.53524	0.34422	0.00017393	0.29299	0.00014804	0.63721	0.00032197	505.2752253648186	33.963	0.31207	33.669	33.455	33.767	-0.29419					8	5	2	0	0	0	0.58007	1	12488	12488		34.102	17.953	1	2345500			34604	3580	21964	22084	33314	33314					0.031316881577026834
TSQVRKYQ	8	Unmodified	_TSQVRKYQ_					0	0	0		MMRN1|p.Q839H|1|0.17|ENSG00000138722|chr4:89936197-89936197|A/C|missense_variant;MMRN1|p.G883Afs*3|1|0.34|ENSG00000138722|chr4:89936321-89936321|A/-|frameshift_variant;ENSG00000138722|ENST00000264790|MMRN1	MMRN1|p.Q839H|1|0.17|ENSG00000138722|chr4:89936197-89936197|A/C|missense_variant	MMRN1|p.Q839H|1|0.17|ENSG00000138722|chr4:89936197-89936197|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	505.2745666503906	2	505.274898	1008.53524	0.25572	0.00012921	-0.41637	-0.00021038	-0.16065	-8.1172E-05	505.2747090085392	34.428	0.36364	34.134	33.923	34.287	-0.29419					10	6	2	0	0	0	0.72197	1	12731	12731		20.454	1.0146	1	4769700			34605	3580	21964	22084	33315	33315					0.031316881577026834
TSQVRKYQ	8	Unmodified	_TSQVRKYQ_					0	0	0		MMRN1|p.Q839H|1|0.17|ENSG00000138722|chr4:89936197-89936197|A/C|missense_variant;MMRN1|p.G883Afs*3|1|0.34|ENSG00000138722|chr4:89936321-89936321|A/-|frameshift_variant;ENSG00000138722|ENST00000264790|MMRN1	MMRN1|p.Q839H|1|0.17|ENSG00000138722|chr4:89936197-89936197|A/C|missense_variant	MMRN1|p.Q839H|1|0.17|ENSG00000138722|chr4:89936197-89936197|A/C|missense_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	505.274898	1008.53524	0.32344	0.00016342	0.52437	0.00026495	0.84781	0.00042838	505.2750656463973	34.059	0.31163	33.674	33.466	33.777	-0.38426	0.0025428	5.8198E-05	NaN	34.102	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2302900			34606	3580	21964	22084							0.031316881577026834
TSRDGANYNT	10	Unmodified	_TSRDGANYNT_					0	0	0			REV__ENSG00000090382|ENST00000261267|LYZ	REV__ENSG00000090382|ENST00000261267|LYZ	MULTI-MSMS	HCT116MG_D190212_S4	4	550.2177124023438	2	549.744159	1097.47377	-0.067076	-3.6875E-05	0.28374	0.00015598	0.21667	0.00011911	549.7444405951998	15.165	0.91781	15.004	14.44	15.358	-0.16089					33	18	2	0	0	0	0.86862	1	4805	4805		6.2058	1.8765	1	2566200	+		34607	10982	21965	22085	33316	33316					-0.0710728833223584
TSRELVTDP	9	Unmodified	_TSRELVTDP_					0	0	0			REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-SECPEP	HCT116MG_D190212_S3	3	509.27386474609375	2	509.264196	1016.51384	0.22891	0.00011658	0.11477	5.8451E-05	0.34369	0.00017503	509.26426011116524	33.503	0.81624	33.212	32.955	33.771	-0.29013					10	6	2	0	0	0	0.23301	1	12349	12349		15.847	15.847	1	14522000	+		34608	13038	21966	22086	33317	33317					0.006242583383254896
TSRHTPPTR	9	Unmodified	_TSRHTPPTR_					0	0	0		PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant	PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant	PTPN18|p.H302Pfs*51|1|0.35|ENSG00000072135|chr2:130370939-130370940|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	526.7289428710938	2	526.783422	1051.55229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.521	1	24.252	23.752	24.752	-0.26881								0	0	0	0.74436	1	8644	8644		16.942	2.104	1				34609	9792	21967	22087	33318	33318					0.0285760876349741
TSRKPSPQ	8	Unmodified	_TSRKPSPQ_					0	0	0		MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	MAP1B|p.Y2023Afs*214|1|0.03|ENSG00000131711|chr5:72199421-72199422|-/GC|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	450.74847412109375	2	450.748516	899.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.702	1	22.464	21.964	22.964	-0.23758								0	0	0	0.8837	1	7912	7912		12.532	0.89125	1				34610	9316	21968	22088	33319	33319					0.028717300948983393
TSRQEYLPGQ	10	Unmodified	_TSRQEYLPGQ_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	HCT116MG_D190212_S4	4	589.287353515625	2	589.793652	1177.57275	0.25165	0.00014842	1.0457	0.00061676	1.2974	0.00076518	589.7937654681349	17.213	0.67293	17.043	16.656	17.329	-0.17047					26	12	3	0	0	0	0.30526	1	5559	5559		10.074	0	1	21340000	+		34611	12396	21969	22089	33320	33320					-0.008932653673355162
TSRQGIFP	8	Unmodified	_TSRQGIFP_					0	0	0		nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;SORBS1|p.A1135Qfs*17|1|0.24|ENSG00000095637|chr10:95336757-95336757|C/-|frameshift_variant;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-4|SORBS1	nc|ENSG00000095637|Q9BX66-4|SORBS1	MSMS	HCT116MG_D190212_S4	4	452.90618896484375	2	453.245609	904.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.787	1	33.402	32.902	33.902	-0.38426								0	0	0	0.8837	1	12311	12311		14.582	2.0501	1				34612	1611	21970	22090	33321	33321					0.02060631583231043
TSRRLSAVAV	10	Unmodified	_TSRRLSAVAV_					0	0	0			REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L	REV__nc|ENSG00000110427|Q6ZVL6|KIAA1549L	MULTI-MSMS	HCT116MG_D190212_S2	2	530.3173828125	2	530.317097	1058.61964	0.30227	0.0001603	0.010133	5.374E-06	0.31241	0.00016568	530.3170093369758	12.295	0.15844	12.006	11.942	12.101	-0.28953					11	7	2	0	0	0	0.89149	1	4019	4019		0.40072	0	1	591160	+		34613	11400	21971	22091	33322	33322					0.09267638974461079
TSRRRRRRNYF	11	Unmodified	_TSRRRRRRNYF_					0	0	0		ENST00000473523.1_1_3:85008309-85008745:+|nuORF	ENST00000473523.1_1_3:85008309-85008745:+|nuORF	ENST00000473523.1_1_3:85008309-85008745:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	785.44775390625	2	784.44308	1566.87161	0.7976	0.00062567	0.52364	0.00041077	1.3212	0.0010364	784.4433440574409	44.957	0.31078	44.957	44.829	45.139	0					15	5	4	0	0	0	0.74191	1	17030	17030		1.0715	1.0715	1	98837000			34614	8179	21972	22092	33323	33323					0.11084670108539285
TSRTRRKTTT	10	Unmodified	_TSRTRRKTTT_					0	0	0			REV__DKKL1|p.M76Wfs*34|1|0.14|ENSG00000104901|chr19:49365546-49365546|C/-|frameshift_variant	REV__DKKL1|p.M76Wfs*34|1|0.14|ENSG00000104901|chr19:49365546-49365546|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	403.2326965332031	3	403.233704	1206.67928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.758	1	11.468	10.968	11.968	-0.28953								0	0	0	0.97054	1	3808	3808		0.13989	0.04505	1		+		34615	10369	21973	22093	33324	33324					0.08420909917845165
TSRTWSLP	8	Unmodified	_TSRTWSLP_					0	0	0			REV__ENST00000391919.1_1_19:46857064-46878873:+|nuORF	REV__ENST00000391919.1_1_19:46857064-46878873:+|nuORF	MSMS	HCT116MG_D190212_S3	3	474.2516174316406	2	474.250892	946.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.619	1	36.318	35.818	36.818	-0.30113								0	0	0	0.8837	1	13537	13537		13.508	0.97634	1		+		34616	15303	21974	22094	33325	33325					0.011846142376612079
TSRVQEILLP	10	Unmodified	_TSRVQEILLP_					0	0	0		ENST00000313984.3_1_1:235659510-235667614:-|nuORF;ENST00000436054.1_1_9:74920469-74956553:+|nuORF	ENST00000313984.3_1_1:235659510-235667614:-|nuORF	ENST00000313984.3_1_1:235659510-235667614:-|nuORF	MSMS	HCT116MG_D190212_S4	4	578.3383178710938	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.655	1	33.271	32.771	33.771	-0.38426								0	0	0	0.95351	1	12259	12259		3.9444	0	1				34617	7077	21975	22095	33326	33326					0.09477659085905543
TSRWRMRRRPS	11	Unmodified	_TSRWRMRRRPS_					0	0	0		ARC|p.L341Cfs*83|1|0.48|ENSG00000198576|chr8:142613251-142613251|G/-|frameshift_variant	ARC|p.L341Cfs*83|1|0.48|ENSG00000198576|chr8:142613251-142613251|G/-|frameshift_variant	ARC|p.L341Cfs*83|1|0.48|ENSG00000198576|chr8:142613251-142613251|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	496.94146728515625	3	496.940749	1487.80042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.007	1	13.007	12.507	13.507	0								0	0	0	0.9619	1	4204	4204		0.094841	0	1				34618	165	21976	22096	33327	33327					0.07602834079511922
TSSAELSTSAP	11	Unmodified	_TSSAELSTSAP_					0	0	0		ENST00000468370.5_1_14:30107689-30135322:-|nuORF;PRKD1|p.S448Vfs*28|1|0.08|ENSG00000184304|chr14:29632913-29632919|ATTTGCT/-|frameshift_variant;PRKD1|p.N701Kfs*6|1|0.26|ENSG00000184304|chr14:29599090-29599091|-/T|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1	ENST00000468370.5_1_14:30107689-30135322:-|nuORF	ENST00000468370.5_1_14:30107689-30135322:-|nuORF	MSMS	HCT116MG_D190212_S2	2	525.7765502929688	2	525.751118	1049.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.675	1	25.306	24.806	25.806	-0.36914								0	0	0	0.93552	1	9256	9256		13.906	0	1				34619	5765	21977	22097	33328	33328					-0.035080556237971905
TSSAWAPGR	9	Unmodified	_TSSAWAPGR_					0	0	0			REV__ENST00000560219.2_1_15:90321464-90321809:+|nuORF	REV__ENST00000560219.2_1_15:90321464-90321809:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	466.7325439453125	2	466.732866	931.451179	0.13761	6.4226E-05	0.02988	1.3946E-05	0.16749	7.8172E-05	466.7327760947027	20.966	1.0445	21.001	20.454	21.499	0.034473					43	19	3	0	0	0	0.43775	1	7142	7142		20.454	0.039092	1	22946000	+		34620	16485	21978	22098	33329	33329					-0.017288429392010585
TSSAWAPGR	9	Unmodified	_TSSAWAPGR_					0	0	0			REV__ENST00000560219.2_1_15:90321464-90321809:+|nuORF	REV__ENST00000560219.2_1_15:90321464-90321809:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	466.7333679199219	2	466.732866	931.451179	-0.034592	-1.6145E-05	0.26554	0.00012394	0.23095	0.00010779	466.7329392823466	21.139	1.1941	20.929	20.292	21.486	-0.20959					48	22	3	0	0	0	0.43775	1	7122	7122		20.454	2.3073	1	21714000	+		34621	16485	21978	22098	33330	33330					-0.017288429392010585
TSSDEDEC	8	Unmodified	_TSSDEDEC_					0	0	0		CD58|p.Y103C|1|0.33|ENSG00000116815|chr1:116544367-116544367|T/C|missense_variant	CD58|p.Y103C|1|0.33|ENSG00000116815|chr1:116544367-116544367|T/C|missense_variant	CD58|p.Y103C|1|0.33|ENSG00000116815|chr1:116544367-116544367|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	443.1412658691406	2	443.142555	884.270557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.685	1	15.523	15.023	16.023	-0.16173								0	0	0	0.8837	1	5076	5076		2.5775	0	1				34622	375	21979	22099	33331	33331					-0.17620774168881326
TSSDRGYGSP	10	Unmodified	_TSSDRGYGSP_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	HCT116MG_D190212_S4	4	514.483154296875	2	513.727978	1025.4414	-0.40301	-0.00020704	0.34482	0.00017714	-0.058197	-2.9897E-05	513.7283165337607	15.701	0.84952	15.539	15.172	16.022	-0.16173					18	16	2	0	0	0	0.29999	1	5223	5223		8.7454	0	1	1167200			34623	3979	21980	22100	33332	33332					-0.0703007573524701
TSSDTPLAPY	10	Unmodified	_TSSDTPLAPY_					0	0	0			REV__PCDHGA10|p.G575S|1|0.28|ENSG00000253846|chr5:141414898-141414898|G/A|missense_variant	REV__PCDHGA10|p.G575S|1|0.28|ENSG00000253846|chr5:141414898-141414898|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	526.25146484375	2	526.250754	1050.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.865	1	33.572	33.072	34.072	-0.29311								0	0	0	0.86471	1	12445	12445		20.454	3.5113	1		+		34624	17393	21981	22101	33333	33333					-0.03626850272848969
TSSFDDEYYTN	11	Unmodified	_TSSFDDEYYTN_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	HCT116MG_D190212_S4	4	671.2599487304688	2	671.259504	1340.50446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.35	1	16.186	15.686	16.686	-0.16364								0	0	0	0.95636	1	5345	5345		2.9952	0.26005	1		+		34625	11857	21982	22102	33334	33334					-0.15217599528500614
TSSGFLGP	8	Unmodified	_TSSGFLGP_					0	0	0			REV__ENST00000486327.6_1_19:47880370-47884327:+|nuORF	REV__ENST00000486327.6_1_19:47880370-47884327:+|nuORF	MSMS	HCT116MG_D190212_S3	3	382.85260009765625	2	383.192511	764.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.134	1	26.964	26.464	27.464	-0.16933								0	0	0	0.8837	1	9765	9765		14.582	0	1		+		34626	12070	21983	22103	33335	33335					-0.021141239820963165
TSSILVQID	9	Unmodified	_TSSILVQID_					0	0	0			REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1	REV__tr|U7SZG7|U7SZG7_FUSNUDNAreplicationandrepairproteinRecFOS=FusobacteriumnucleatumCTI-5OX=1316586GN=recFPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	488.30804443359375	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.225	1	25.929	25.429	26.429	-0.29611								0	0	0	0.76575	1	9332	9332		15.847	1.0089	1		+		34627	17878	21984	22104	33336	33336					0.040143304864727725
TSSINGQSWP	10	Unmodified	_TSSINGQSWP_					0	0	0			REV__ENST00000416707.1_1_3:48732230-48732618:-|nuORF	REV__ENST00000416707.1_1_3:48732230-48732618:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	539.2557373046875	2	538.753995	1075.49344	0.34359	0.00018511	0.041724	2.2479E-05	0.38531	0.00020759	538.7539943197514	18.562	0.57191	18.381	18.199	18.771	-0.18052					17	10	3	0	0	0	0.86862	1	6330	6330		6.2058	0	1	27395000	+		34628	15481	21985	22105	33337	33337					-0.04128912321448297
TSSLNFKV	8	Unmodified	_TSSLNFKV_					0	0	0		SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant;SAFB2|p.P839Lfs*16|1|0.2|ENSG00000130254|chr19:5590287-5590287|G/-|frameshift_variant;SAFB2|p.L837Cfs*18|1|0.18|ENSG00000130254|chr19:5590295-5590295|C/-|frameshift_variant;ENSG00000130254|ENST00000252542|SAFB2	SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant	SAFB2|p.G824Afs*8|2|0.21|ENSG00000130254|chr19:5590332-5590332|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	448.24798583984375	2	448.247818	894.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.028	1	26.028	25.528	26.528	0								0	0	0	0.67883	1	9387	9387		32.305	0	1				34629	3066	21986	22106	33338	33338					0.02962096006149295
TSSLWKDKA	9	Unmodified	_TSSLWKDKA_					0	0	0		NOS3|p.G440Afs*64|7|0.31|ENSG00000164867|chr7:151001310-151001310|G/-|frameshift_variant;nc|ENSG00000164867|P29474-3|NOS3;nc|ENSG00000164867|P29474-2|NOS3;NOS3|p.A641Pfs*97|1|0.11|ENSG00000164867|chr7:151006986-151006986|G/-|frameshift_variant;NOS3|p.G843Afs*115|1|0.27|ENSG00000164867|chr7:151010123-151010123|C/-|frameshift_variant;ENSG00000164867|ENST00000297494|NOS3	NOS3|p.G440Afs*64|7|0.31|ENSG00000164867|chr7:151001310-151001310|G/-|frameshift_variant	NOS3|p.G440Afs*64|7|0.31|ENSG00000164867|chr7:151001310-151001310|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	518.27685546875	2	518.277106	1034.53966	0.35649	0.00018476	-0.94475	-0.00048964	-0.58825	-0.00030488	518.276762733538	25.284	0.41619	25.178	25.048	25.464	-0.10618					9	7	2	0	0	0	0.26536	1	9022	9022		34.402	0	1	13729000			34630	4725	21987	22107	33339	33339					0.023771525806068894
TSSPALPRTAP	11	Unmodified	_TSSPALPRTAP_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MSMS	HCT116MG_D190212_S4	4	549.3013305664062	2	549.301113	1096.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.757	1	25.466	24.966	25.966	-0.29022								0	0	0	0.92983	1	9143	9143		16.149	0	1				34631	3625	21988	22108	33340	33340					0.04324226500648365
TSSPKSRGESS	11	Unmodified	_TSSPKSRGESS_					0	0	0			REV__OR13C5|p.T246Rfs*4|1|0.03|ENSG00000277556|chr9:104598679-104598680|-/TT|frameshift_variant	REV__OR13C5|p.T246Rfs*4|1|0.03|ENSG00000277556|chr9:104598679-104598680|-/TT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	561.7727661132812	2	561.772916	1121.53128	0.35385	0.00019878	0.11166	6.2725E-05	0.46551	0.00026151	561.7728428316897	18.453	0.46903	18.453	18.141	18.61	0					17	8	3	0	0	0	0.28711	1	6322	6322		65.474	10.239	1	6745700	+		34632	14466	21989	22109	33341	33341					-0.0246244612665123
TSSPKSRGESS	11	Unmodified	_TSSPKSRGESS_					0	0	0			REV__OR13C5|p.T246Rfs*4|1|0.03|ENSG00000277556|chr9:104598679-104598680|-/TT|frameshift_variant	REV__OR13C5|p.T246Rfs*4|1|0.03|ENSG00000277556|chr9:104598679-104598680|-/TT|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	561.772916	1121.53128	0.35385	0.00019878	0.11166	6.2725E-05	0.46551	0.00026151	561.7728428316897	18.453	0.46903	18.453	18.141	18.61	0	0	0	NaN	65.474	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6745700	+		34633	14466	21989	22109							-0.0246244612665123
TSSPWRSTWTP	11	Unmodified	_TSSPWRSTWTP_					0	0	0		ENST00000436075.1_1_22:20837457-20837766:-|nuORF	ENST00000436075.1_1_22:20837457-20837766:-|nuORF	ENST00000436075.1_1_22:20837457-20837766:-|nuORF	MSMS	HCT116MG_D190212_S4	4	653.314697265625	2	653.314751	1304.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.385	1	15.223	14.723	15.723	-0.16173								0	0	0	0.95196	1	4955	4955		5.2969	0	1				34634	7882	21990	22110	33342	33342					-0.025172899589733788
TSSQEHLNHS	10	Unmodified	_TSSQEHLNHS_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	HCT116MG_D190212_S2	2	570.2572021484375	2	570.257434	1138.50031	0.40213	0.00022932	-0.093022	-5.3047E-05	0.30911	0.00017627	570.2573303781342	16.746	0.36443	16.404	16.152	16.516	-0.34183					11	6	2	0	0	0	0.6277	2	5675	5675;5699		26.268	3.9677	1	4127900			34635	3078	21991	22111	33343;33344	33343					-0.06339599440912025
TSSRENILP	9	Unmodified	_TSSRENILP_					0	0	0		nc|ENSG00000176160|Q4G112-2|HSF5;ENSG00000176160|ENST00000323777|HSF5	nc|ENSG00000176160|Q4G112-2|HSF5	nc|ENSG00000176160|Q4G112-2|HSF5	MULTI-MSMS	HCT116MG_D190212_S1	1	508.8031005859375	2	508.772188	1015.52982	0.60652	0.00030858	0.088439	4.4995E-05	0.69496	0.00035357	508.77229530879777	28.981	0.31337	28.981	28.851	29.164	0					7	5	2	0	0	0	0.64512	1	10631	10631		8.5933	0	1	11103000			34636	5411	21992	22112	33345	33345					0.022679645752418764
TSSSARFD	8	Unmodified	_TSSSARFD_					0	0	0			REV__ENST00000483035.5_1_6:118886676-118973579:-|nuORF	REV__ENST00000483035.5_1_6:118886676-118973579:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	435.70123291015625	2	435.701232	869.38791	0.033776	1.4716E-05	0.17439	7.5983E-05	0.20817	9.07E-05	435.7013001922856	19.558	0.41614	19.187	18.938	19.355	-0.37099					12	7	3	0	0	0	0.74197	1	6815	6815		18.146	1.0335	1	8017700	+		34637	11439	21993	22113	33346	33346					-0.05200828447095773
TSSSHTLTY	9	Unmodified	_TSSSHTLTY_					0	0	0		nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000563753.1_1_15:73884305-73925556:-|nuORF	nc|ENSG00000156642|Q9Y639-3|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	MULTI-MSMS	HCT116MG_D190212_S2	2	996.4605102539062	1	996.463266	995.45599	0.70362	0.00070113	-1.9611	-0.0019541	-1.2575	-0.001253	996.4613042955727	27.627	0.56583	27.285	26.985	27.551	-0.34201					14	10	2	0	0	0	0.057285	1	10056	10056		71.134	25.113	1	25423000			34638	4292	21994	22114	33347	33347					-0.041920035870930406
TSSSHTTRSPP	11	Unmodified	_TSSSHTTRSPP_					0	0	0			REV__PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant	REV__PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	579.28125	2	579.280909	1156.54726	0.4034	0.00023368	0.44271	0.00025645	0.84611	0.00049014	579.2810218345411	15.866	0.36444	15.951	15.717	16.081	0.085423					14	6	3	0	0	0	0.74191	1	5138	5138		5.7319	0.97584	1	3737000	+		34639	12257	21995	22115	33348	33348					-0.024747398897716266
TSSTSGCL	8	Unmodified	_TSSTSGCL_					0	0	0			REV__ENST00000554611.5_1_14:100157455-100174039:+|nuORF	REV__ENST00000554611.5_1_14:100157455-100174039:+|nuORF	MSMS	HCT116MG_D190212_S1	1	377.7215881347656	2	378.165636	754.316719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.43	1	29.43	28.93	29.93	0								0	0	0	0.8837	1	10756	10756		9.3474	2.9933	1		+		34640	16451	21996	22116	33349	33349					-0.07026664476120459
TSSTSGCL	8	Unmodified	_TSSTSGCL_					0	0	0			REV__ENST00000554611.5_1_14:100157455-100174039:+|nuORF	REV__ENST00000554611.5_1_14:100157455-100174039:+|nuORF	MSMS	HCT116MG_D190212_S4	4	377.72540283203125	2	378.165636	754.316719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.372	1	36.988	36.488	37.488	-0.3839								0	0	0	0.8837	1	13712	13712		5.7604	2.8712	1		+		34641	16451	21996	22116	33350	33350					-0.07026664476120459
TSSVRAPP	8	Unmodified	_TSSVRAPP_					0	0	0			REV__ENST00000300811.7_1_19:44123872-44123962:-|nuORF	REV__ENST00000300811.7_1_19:44123872-44123962:-|nuORF	MSMS	HCT116MG_D190212_S2	2	407.7243957519531	2	407.72451	813.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.055	1	20.672	20.172	21.172	-0.38288								0	0	0	0.8837	1	7390	7390		13.508	0	1		+		34642	14780	21997	22117	33351	33351					0.020286561748548593
TSSWSERHRLH	11	Unmodified	_TSSWSERHRLH_					0	0	0			REV__ENSG00000165494|ENST00000690938|PCF11	REV__ENSG00000165494|ENST00000690938|PCF11	MULTI-MSMS	HCT116MG_D190212_S2	2	465.900390625	3	465.900725	1394.68034	0.17178	8.0033E-05	-0.56906	-0.00026512	-0.39728	-0.00018509	465.900417638328	17.875	0.2612	17.519	17.336	17.597	-0.35647					9	4	3	0	0	0	0.7259	1	6138	6138		6.6235	0	1	8653700	+		34643	13055	21998	22118	33352	33352					-0.001208757132417304
TSSYFNMYML	10	Unmodified	_TSSYFNMYML_					0	0	0			REV__ENSG00000140030|ENST00000267549|GPR65	REV__ENSG00000140030|ENST00000267549|GPR65	MSMS	HCT116MG_D190212_S4	4	628.368896484375	2	628.769942	1255.52533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.788	1	43.413	42.913	43.913	-0.37433								0	0	0	0.94107	1	16108	16108		6.7232	1.4263	1		+		34644	12283	21999	22119	33353	33353					-0.09221003954212392
TSTAPDPVAT	10	Unmodified	_TSTAPDPVAT_					0	0	0			REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	REV__ENST00000607809.5_1_12:54472874-54474119:-|nuORF	MSMS	HCT116MG_D190212_S4	4	480.2364807128906	2	480.237647	958.460741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.491	1	27.169	26.669	27.669	-0.32157								0	0	0	0.5764	1	9844	9844		43.858	14.777	1		+		34645	16781	22000	22120	33354	33354					-0.020151194443315035
TSTFFQFGA	9	Unmodified	_TSTFFQFGA_					0	0	0		GRIN2A|p.L425*|1|0.24|ENSG00000183454|chr16:9849811-9849811|G/-|frameshift_variant;nc|ENSG00000183454|Q12879-2|GRIN2A;GRIN2A|p.S1341Afs*56|4|0.26|ENSG00000183454|chr16:9763523-9763523|T/-|frameshift_variant;ENSG00000183454|ENST00000330684|GRIN2A	GRIN2A|p.L425*|1|0.24|ENSG00000183454|chr16:9849811-9849811|G/-|frameshift_variant	GRIN2A|p.L425*|1|0.24|ENSG00000183454|chr16:9849811-9849811|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	503.23553466796875	2	503.23745	1004.46035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.504	1	20.303	19.803	20.803	-0.20133								0	0	0	0.74436	1	7023	7023		16.942	2.5369	1				34646	5718	22001	22121	33355	33355					-0.041704943735112465
TSTFMNYYY	9	Unmodified	_TSTFMNYYY_					0	0	0			REV__OPRL1|p.D130Y|1|0.13|ENSG00000125510|chr20:64097956-64097956|G/T|missense_variant	REV__OPRL1|p.D130Y|1|0.13|ENSG00000125510|chr20:64097956-64097956|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	595.247802734375	2	595.247157	1188.47976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.203	1	38.822	38.322	39.322	-0.38055								0	0	0	0.76781	1	14396	14396		8.5933	1.8701	1		+		34647	17363	22002	22122	33356	33356					-0.10693906144911125
TSTGRTLRWQ	10	Unmodified	_TSTGRTLRWQ_					0	0	0		nc|ENSG00000100867|Q13268-2|DHRS2	nc|ENSG00000100867|Q13268-2|DHRS2	nc|ENSG00000100867|Q13268-2|DHRS2	MSMS	HCT116MG_D190212_S2	2	603.2449951171875	2	603.322911	1204.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.343	1	42.274	41.774	42.774	-0.069115								0	0	0	0.92272	1	16025	16025		10.824	0	1				34648	9405	22003	22123	33357	33357					0.03713835997814385
TSTHQLNSERY	11	Unmodified	_TSTHQLNSERY_					0	0	0		MGAT4C|p.G113Efs*20|1|0.2|ENSG00000182050|chr12:85980390-85980390|T/-|frameshift_variant;MGAT4C|p.L276Yfs*2|1|0.09|ENSG00000182050|chr12:85979899-85979899|A/-|frameshift_variant;MGAT4C|p.N300Mfs*2|1|0.24|ENSG00000182050|chr12:85979827-85979827|T/-|frameshift_variant;ENSG00000182050|ENST00000611864|MGAT4C;nc|ENSG00000182050|Q9UBM8-2|MGAT4C	MGAT4C|p.G113Efs*20|1|0.2|ENSG00000182050|chr12:85980390-85980390|T/-|frameshift_variant	MGAT4C|p.G113Efs*20|1|0.2|ENSG00000182050|chr12:85980390-85980390|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	668.31640625	2	668.318022	1334.62149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.965	1	29.965	29.465	30.465	0								0	0	0	0.94012	1	10972	10972		11.495	6.1978	1				34649	5650	22004	22124	33358	33358					-0.03243396798234244
TSTIEQQL	8	Unmodified	_TSTIEQQL_					0	0	0		ENSG00000181817|ENST00000315732|LSM10;ENST00000476041.1_1_1:36859367-36863370:-|nuORF	ENSG00000181817|ENST00000315732|LSM10	ENSG00000181817|ENST00000315732|LSM10	MSMS	HCT116MG_D190212_S4	4	460.24017333984375	2	460.24019	918.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.067	1	22.83	22.33	23.33	-0.23758								0	0	0	0.8837	1	8058	8058		9.3474	0	1				34650	5642	22005	22125	33359	33359					0.0033318441828669165
TSTKFQDTLH	10	Unmodified	_TSTKFQDTLH_					0	0	0		ENSG00000168487|ENST00000306385|BMP1;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENST00000354870.5_1_8:22035226-22069238:+|nuORF	ENSG00000168487|ENST00000306385|BMP1	ENSG00000168487|ENST00000306385|BMP1	MULTI-MSMS	HCT116MG_D190212_S3	3	589.2966918945312	2	589.296027	1176.5775	0.63203	0.00037245	-0.01461	-8.6098E-06	0.61742	0.00036384	589.2958977713168	27.801	0.67636	27.613	27.309	27.985	-0.18847					21	12	3	0	0	0	0.6277	1	10036	10036		26.268	0	1	7058600			34651	5014	22006	22126	33360	33360					-0.00372381224565288
TSTKFQDTLH	10	Unmodified	_TSTKFQDTLH_					0	0	0		ENSG00000168487|ENST00000306385|BMP1;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENST00000354870.5_1_8:22035226-22069238:+|nuORF	ENSG00000168487|ENST00000306385|BMP1	ENSG00000168487|ENST00000306385|BMP1	MULTI-MSMS	HCT116MG_D190212_S4	4	589.2955932617188	2	589.296027	1176.5775	0.63778	0.00037584	-0.10852	-6.3951E-05	0.52926	0.00031189	589.2958341888683	27.881	0.71794	27.56	27.252	27.97	-0.32157					24	13	2	0	0	0	0.53455	1	9976	9976		32.786	5.5625	1	7244600			34652	5014	22006	22126	33361	33361					-0.00372381224565288
TSTKFQDTLH	10	Unmodified	_TSTKFQDTLH_					0	0	0		ENSG00000168487|ENST00000306385|BMP1;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENST00000354870.5_1_8:22035226-22069238:+|nuORF	ENSG00000168487|ENST00000306385|BMP1	ENSG00000168487|ENST00000306385|BMP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	589.296027	1176.5775	0.63203	0.00037245	-0.01461	-8.6098E-06	0.61742	0.00036384	589.2958977713168	27.801	0.67636	27.613	27.309	27.985	-0.18847	0.026396	6.587E-05	NaN	32.786	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7058600			34653	5014	22006	22126							-0.00372381224565288
TSTMDCSAHY	10	Unmodified	_TSTMDCSAHY_					0	0	0			REV__ENST00000456353.5_1_10:80721072-80808596:-|nuORF	REV__ENST00000456353.5_1_10:80721072-80808596:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1115.4136962890625	1	1115.41322	1114.40594	0.50599	0.00056439	-0.31005	-0.00034584	0.19594	0.00021855	1115.41274729109	26.932	0.26297	26.579	26.45	26.713	-0.35254					7	4	2	0	0	0	0.81435	1	9789	9789		10.824	1.4408	1	19007000	+		34654	15751	22007	22127	33362	33362					-0.14668197578907893
TSTQDSTEP	9	Unmodified	_TSTQDSTEP_					0	0	0			REV__nc|ENSG00000143164|Q58WW2|DCAF6	REV__nc|ENSG00000143164|Q58WW2|DCAF6	MSMS	HCT116MG_D190212_S4	4	483.20611572265625	2	483.206544	964.398534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.075	1	56.775	56.275	57.275	-0.3004								0	0	0	0.76902	1	21413	21413		4.3292	0	1		+		34655	12377	22008	22128	33363	33363					-0.08508890583323137
TSTSDTDDN	9	Unmodified	_TSTSDTDDN_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MSMS	HCT116MG_D190212_S1	1	478.1778259277344	2	478.177983	954.341413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7522	1	8.7522	8.2522	9.2522	0								0	0	0	0.77025	1	2641	2641		0	0	1		+		34656	11097	22009	22129	33364	33364					-0.13758357859705939
TSTSDTDDN	9	Unmodified	_TSTSDTDDN_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MSMS	HCT116MG_D190212_S1	1	478.1780090332031	2	478.177983	954.341413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.193	1	13.193	12.693	13.693	0								0	0	0	0.77025	1	4274	4274		0	0	1		+		34657	11097	22009	22129	33365	33365					-0.13758357859705939
TSTSDTDDN	9	Unmodified	_TSTSDTDDN_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MSMS	HCT116MG_D190212_S2	2	478.177978515625	2	478.177983	954.341413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3325	1	2.3083	1.8083	2.8083	-0.024288								0	0	0	0.77025	1	762	762		0	0	1		+		34658	11097	22009	22129	33366	33366					-0.13758357859705939
TSTSDTDDN	9	Unmodified	_TSTSDTDDN_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MSMS	HCT116MG_D190212_S2	2	478.17852783203125	2	478.177983	954.341413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.4503	1	4.3612	3.8612	4.8612	-0.089082								0	0	0	0.77025	1	1406	1406		0	0	1		+		34659	11097	22009	22129	33367	33367					-0.13758357859705939
TSTSDTDDN	9	Unmodified	_TSTSDTDDN_					0	0	0			REV__ENSG00000100614|ENST00000395076|PPM1A	REV__ENSG00000100614|ENST00000395076|PPM1A	MSMS	HCT116MG_D190212_S2	2	478.1784362792969	2	478.177983	954.341413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.663	1	5.5148	5.0148	6.0148	-0.14816								0	0	0	0.77025	1	1794	1794		0	0	1		+		34660	11097	22009	22129	33368	33368					-0.13758357859705939
TSTSYFRDMNF	11	Unmodified	_TSTSYFRDMNF_					0	0	0		ENST00000431519.6_1_3:133306035-133306089:+|nuORF	ENST00000431519.6_1_3:133306035-133306089:+|nuORF	ENST00000431519.6_1_3:133306035-133306089:+|nuORF	MSMS	HCT116MG_D190212_S3	3	684.796142578125	2	684.798077	1367.5816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.347	1	19.407	18.907	19.907	0.05983								0	0	0	0.94538	1	6629	6629		8.7454	1.1365	1				34661	7857	22010	22130	33369	33369					-0.0874865979317292
TSTSYSQYRE	10	Unmodified	_TSTSYSQYRE_					0	0	0		ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant;ALMS1|p.S3695Afs*27|1|0.24|ENSG00000116127|chr2:73572954-73572954|A/-|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	ALMS1|p.L2987Ffs*8|1|0.38|ENSG00000116127|chr2:73490911-73490911|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	611.2730712890625	2	611.272749	1220.53095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.149	1	22.907	22.407	23.407	-0.24193								0	0	0	0.94339	1	8090	8090		6.2058	0.47393	1				34662	97	22011	22131	33370	33370					-0.07049865846511238
TSTTRLDNDIT	11	Unmodified	_TSTTRLDNDIT_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	MSMS	HCT116MG_D190212_S1	1	618.8071899414062	2	618.806956	1235.59936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.801	1	10.801	10.301	11.301	0								0	0	0	0.96208	1	3343	3343		0	0	1		+		34663	12228	22012	22132	33371	33371					-0.009016212666892898
TSTVPGLA	8	Unmodified	_TSTVPGLA_					0	0	0		PRDM6|p.N450Tfs*67|1|0.26|ENSG00000061455|chr5:123170957-123170957|A/-|frameshift_variant;ENSG00000061455|ENST00000407847|PRDM6;nc|ENSG00000061455|Q9NQX0-2|PRDM6;nc|ENSG00000061455|Q9NQX0-1|PRDM6	PRDM6|p.N450Tfs*67|1|0.26|ENSG00000061455|chr5:123170957-123170957|A/-|frameshift_variant	PRDM6|p.N450Tfs*67|1|0.26|ENSG00000061455|chr5:123170957-123170957|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	745.40966796875	1	745.409046	744.401769	1.2354	0.00092085	0.072498	5.4041E-05	1.3079	0.00097489	745.4089818090508	24.116	0.31102	23.735	23.563	23.874	-0.38055					6	5	2	0	0	0	0.81821	1	8647	8647		9.3474	0	1	5609800			34664	1117	22013	22133	33372	33372					0.01934449052009768
TSVACGFSANT	11	Unmodified	_TSVACGFSANT_					0	0	0			REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	REV__ENST00000492706.5_1_X:54953428-54957450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	529.2338256835938	2	529.234581	1056.45461	0.54157	0.00028662	0.28709	0.00015194	0.82866	0.00043855	529.234608015415	34.03	0.31167	33.646	33.517	33.829	-0.38426					9	5	2	0	0	0	0.7259	1	12416	12416		12.241	2.8575	1	2406300	+		34665	10730	22014	22134	33373	33373					-0.07135960947516651
TSVESYEPQ	9	Unmodified	_TSVESYEPQ_					0	0	0		TLR7|p.F507Lfs*16|1|0.54|ENSG00000196664|chrX:12887024-12887024|T/-|frameshift_variant;TLR7|p.F670Lfs*8|1|0.32|ENSG00000196664|chrX:12887514-12887514|T/-|frameshift_variant;TLR7|p.N1031Kfs*16|1|0.05|ENSG00000196664|chrX:12888600-12888601|-/ATATCAAGATAAT|frameshift_variant;ENSG00000196664|ENST00000380659|TLR7	TLR7|p.F507Lfs*16|1|0.54|ENSG00000196664|chrX:12887024-12887024|T/-|frameshift_variant	TLR7|p.F507Lfs*16|1|0.54|ENSG00000196664|chrX:12887024-12887024|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.729736328125	2	520.232561	1038.45057	0.04695	2.4425E-05	-1.6007	-0.00083274	-1.5538	-0.00080832	520.2318858733756	17.228	0.26002	17.313	17.12	17.381	0.084467					6	4	2	0	0	0	0.25004	1	5775	5775		3.5965	3.1382	1	1922000			34666	6095	22015	22135	33374	33374					-0.06711727169567894
TSVGPPEFSR	10	Unmodified	_TSVGPPEFSR_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S4	4	538.7565307617188	2	538.772188	1075.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.175	1	26.863	26.363	27.363	-0.3114								0	0	0	0.84701	1	9716	9716		22.736	2.3217	1				34667	5624	22016	22136	33375	33375					-0.0049203542478153395
TSVIYSNLTR	10	Unmodified	_TSVIYSNLTR_					0	0	0		SETX|p.G1134Efs*24|1|0.34|ENSG00000107290|chr9:132328199-132328199|T/-|frameshift_variant;SETX|p.G1252Dfs*9|2|0.2|ENSG00000107290|chr9:132327843-132327843|C/-|frameshift_variant;SETX|p.N1361Ifs*53|1|0.11|ENSG00000107290|chr9:132327516-132327516|T/-|frameshift_variant;SETX|p.S1600*|1|0.07|ENSG00000107290|chr9:132326800-132326801|-/A|frameshift_variant;SETX|p.F1748Sfs*3|1|0.55|ENSG00000107290|chr9:132326355-132326355|A/-|frameshift_variant;SETX|p.I2020Nfs*4|1|0.32|ENSG00000107290|chr9:132295919-132295920|-/T|frameshift_variant;SETX|p.T2478Sfs*35|1|0.35|ENSG00000107290|chr9:132264836-132264840|TATGG/-|frameshift_variant;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	SETX|p.G1134Efs*24|1|0.34|ENSG00000107290|chr9:132328199-132328199|T/-|frameshift_variant	SETX|p.G1134Efs*24|1|0.34|ENSG00000107290|chr9:132328199-132328199|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	577.1268920898438	2	577.31422	1152.61389	0.3643	0.00021032	3.7145	0.0021444	4.0788	0.0023547	577.3164168585917	16.52	0.26075	16.178	15.943	16.204	-0.34183					5	4	2	0	0	0	0.31063	1	5473	5473		1.1933	0	1	6574200			34668	2110	22017	22137	33376	33376					0.043684956721335766
TSVLLSLL	8	Unmodified	_TSVLLSLL_					0	0	0			REV__IL17RB|p.A301S|1|1.0|ENSG00000056736|chr3:53860183-53860183|G/T|missense_variant	REV__IL17RB|p.A301S|1|1.0|ENSG00000056736|chr3:53860183-53860183|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	423.26995849609375	2	423.270761	844.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.954	1	18.585	18.085	19.085	-0.3695								0	0	0	0.8837	1	6545	6545		5.7604	0	1		+		34669	16900	22018	22138	33377	33377					0.09848741188375243
TSVMGRVP	8	Unmodified	_TSVMGRVP_					0	0	0			REV__ENST00000426335.6_1_11:47186834-47186960:-|nuORF	REV__ENST00000426335.6_1_11:47186834-47186960:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	424.2076416015625	2	423.728738	845.442923	0.12675	5.3708E-05	-0.41097	-0.00017414	-0.28422	-0.00012043	423.72890825744435	32.178	0.15614	31.948	31.838	31.995	-0.23009					4	2	2	0	0	0	0.31111	1	11892	11892		5.7604	0	1	11238000	+		34670	15552	22019	22139	33378	33378					0.01401886819826359
TSVNERKGP	9	Unmodified	_TSVNERKGP_					0	0	0		ENST00000322602.9_1_5:153418645-153418858:+|nuORF	ENST00000322602.9_1_5:153418645-153418858:+|nuORF	ENST00000322602.9_1_5:153418645-153418858:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	494.2772216796875	2	494.26453	986.514508	0.48204	0.00023826	0.94556	0.00046736	1.4276	0.00070561	494.26469632142937	25.945	0.20755	25.576	25.446	25.654	-0.36914					7	3	3	0	0	0	0.21838	1	9390	9390		20.454	5.8719	1	6258000			34671	7111	22020	22140	33379	33379					0.0207109777804817
TSVNERKGP	9	Unmodified	_TSVNERKGP_					0	0	0		ENST00000322602.9_1_5:153418645-153418858:+|nuORF	ENST00000322602.9_1_5:153418645-153418858:+|nuORF	ENST00000322602.9_1_5:153418645-153418858:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	494.26453	986.514508	0.27545	0.00013614	-0.05947	-2.9394E-05	0.21598	0.00010675	494.26422967271156	25.483	0.1563	25.483	25.405	25.561	0	-0.046519	-0.00051969	NaN	14.838	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2662800			34672	7111	22020	22140							0.0207109777804817
TSVQVRHHW	9	Unmodified	_TSVQVRHHW_					0	0	0		nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	nc|ENSG00000184385|Q8N2C9|UMODL1-AS1	MULTI-SECPEP	HCT116MG_D190212_S3	3	575.3402099609375	2	575.299239	1148.58392	0.37752	0.00021719	-0.34755	-0.00019995	0.029973	1.7244E-05	575.2991424664651	31.194	0.41775	30.934	30.709	31.126	-0.26071					14	7	3	0	0	0	0.25656	1	11300	11300		5.7319	0	1	14228000			34673	9578	22021	22141	33380	33380					0.015576015174701752
TSVRESEP	8	Unmodified	_TSVRESEP_					0	0	0		ENST00000574356.5_1_17:80674699-80676798:+|nuORF	ENST00000574356.5_1_17:80674699-80676798:+|nuORF	ENST00000574356.5_1_17:80674699-80676798:+|nuORF	MSMS	HCT116MG_D190212_S3	3	452.7215270996094	2	452.722164	903.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.479	1	20.518	20.018	21.018	0.039331								0	0	0	0.8837	1	7085	7085		14.582	0	1				34674	8913	22022	22142	33381	33381					-0.02580272758564206
TSVRGPRP	8	Unmodified	_TSVRGPRP_					0	0	0			REV__ENST00000502720.1_1_4:668344-670033:+|nuORF	REV__ENST00000502720.1_1_4:668344-670033:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	435.2513732910156	2	435.251226	868.487899	0.0086968	3.7853E-06	0.034951	1.5213E-05	0.043648	1.8998E-05	435.25115739201703	19.208	0.83323	18.838	18.575	19.408	-0.3695					34	15	3	0	0	0	0.55794	1	6857	6857		36.044	10.645	1	17197000	+		34675	16122	22023	22143	33382	33382					0.04839453677379879
TSVRPVDAPA	10	Unmodified	_TSVRPVDAPA_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	HCT116MG_D190212_S3	3	506.24029541015625	2	506.774731	1011.53491	0.12269	6.2178E-05	-0.53701	-0.00027214	-0.41432	-0.00020997	506.7744037090566	21.018	0.20817	21.053	20.975	21.183	0.034473					5	3	2	0	0	0	0.28496	1	7300	7300		13.906	0	1	2281300	+		34676	13076	22024	22144	33383	33383					0.029602684378460253
TSVSALQQEFW	11	Unmodified	_TSVSALQQEFW_					0	0	0		ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	MSMS	HCT116MG_D190212_S4	4	648.3156127929688	2	648.31696	1294.61937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.126	1	15.962	15.462	16.462	-0.16364								0	0	0	0.94755	1	5254	5254		7.609	1.4032	1				34677	6198	22025	22145	33384	33384					-0.016158255360551266
TSVSLLPP	8	Unmodified	_TSVSLLPP_					0	0	0			REV__VPS52|p.L502Wfs*63|1|0.48|ENSG00000223501|chr6:33264395-33264395|C/-|frameshift_variant	REV__VPS52|p.L502Wfs*63|1|0.48|ENSG00000223501|chr6:33264395-33264395|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	407.2384033203125	2	407.239461	812.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.069	1	24.962	24.462	25.462	-0.10618								0	0	0	0.8837	1	8933	8933		5.7604	0	1		+		34678	18049	22026	22146	33385	33385					0.050635951201911666
TSWCLWWRWW	10	Unmodified	_TSWCLWWRWW_					0	0	0		ENST00000393400.6_2_3:127295870-127298680:-|nuORF	ENST00000393400.6_2_3:127295870-127298680:-|nuORF	ENST00000393400.6_2_3:127295870-127298680:-|nuORF	MSMS	HCT116MG_D190212_S3	3	755.3507080078125	2	755.347874	1508.6812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.653	1	14.732	14.232	15.232	0.079683								0	0	0	0.96377	1	4734	4734		1.6526	0.32309	1				34679	7623	22027	22147	33386	33386					-0.05279752597925835
TSWCLWWRWW	10	Unmodified	_TSWCLWWRWW_					0	0	0		ENST00000393400.6_2_3:127295870-127298680:-|nuORF	ENST00000393400.6_2_3:127295870-127298680:-|nuORF	ENST00000393400.6_2_3:127295870-127298680:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	755.8497314453125	2	755.347874	1508.6812	0.216	0.00016316	1.4292	0.0010795	1.6452	0.0012427	755.3495395990207	14.628	0.35344	14.468	14.191	14.544	-0.16089					10	6	2	0	0	0	0.31199	1	4667	4667		0.40072	0.050084	1	498750			34680	7623	22027	22147	33387	33387					-0.05279752597925835
TSWPDQKTPD	10	Unmodified	_TSWPDQKTPD_					0	0	0		nc|ENSG00000110786|P54829-2|PTPN5;nc|ENSG00000110786|P54829-3|PTPN5;ENSG00000110786|ENST00000358540|PTPN5	nc|ENSG00000110786|P54829-2|PTPN5	nc|ENSG00000110786|P54829-2|PTPN5	MSMS	HCT116MG_D190212_S4	4	587.7730712890625	2	587.772385	1173.53022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.775	1	25.485	24.985	25.985	-0.29022								0	0	0	0.92607	1	9151	9151		10.074	0	1				34681	2261	22028	22148	33388	33388					-0.049606604955670264
TSWWAPWPGSP	11	Unmodified	_TSWWAPWPGSP_					0	0	0		ENST00000520584.5_1_8:144333447-144335120:+|nuORF	ENST00000520584.5_1_8:144333447-144335120:+|nuORF	ENST00000520584.5_1_8:144333447-144335120:+|nuORF	MSMS	HCT116MG_D190212_S3	3	636.2896118164062	2	636.29583	1270.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.272	1	21.29	20.79	21.79	0.018446								0	0	0	0.93717	1	7405	7405		13.042	4.2971	1				34682	8553	22029	22149	33389	33389					-0.047357561537637594
TSWYLCYIYER	11	Unmodified	_TSWYLCYIYER_					0	0	0			REV__CNGA2|p.K435Sfs*6|1|0.06|ENSG00000183862|chrX:151743806-151743806|A/-|frameshift_variant	REV__CNGA2|p.K435Sfs*6|1|0.06|ENSG00000183862|chrX:151743806-151743806|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	748.850341796875	2	748.84757	1495.68059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.791	1	27.449	26.949	27.949	-0.34201								0	0	0	0.94145	1	10110	10110		10.8	4.1691	1		+		34683	10212	22030	22150	33390	33390					-0.047426368282913245
TSYFFSLKPID	11	Unmodified	_TSYFFSLKPID_					0	0	0			REV__ENST00000345732.8_1_11:60236310-60236409:+|nuORF	REV__ENST00000345732.8_1_11:60236310-60236409:+|nuORF	MSMS	HCT116MG_D190212_S4	4	659.3399047851562	2	659.339904	1316.66525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.714	1	46.343	45.843	46.843	-0.37134								0	0	0	0.93717	1	17255	17255		13.042	1.5478	1		+		34684	15013	22031	22151	33391	33391					0.01958819646210941
TSYFHFNGP	9	Unmodified	_TSYFHFNGP_					0	0	0			REV__nc|ENSG00000162600|Q96E52-2|OMA1	REV__nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-MSMS	HCT116MG_D190212_S3	3	536.1655883789062	2	535.240524	1068.46649	0.45626	0.00024421	-0.40681	-0.00021774	0.049455	2.6471E-05	535.2404176881173	18.487	1.0412	18.563	17.893	18.934	0.076334					35	19	3	0	0	0	0.64512	1	6234	6234		8.5933	2.2392	1	4912900	+		34685	12882	22032	22152	33392	33392					-0.06499976141981278
TSYFQKRVP	9	Unmodified	_TSYFQKRVP_					0	0	0			REV__PMS1|p.K164Nfs*6|3|0.09|ENSG00000064933|chr2:189818084-189818084|A/-|frameshift_variant	REV__PMS1|p.K164Nfs*6|3|0.09|ENSG00000064933|chr2:189818084-189818084|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	375.8717956542969	3	375.873224	1124.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.073	1	17.716	17.216	18.216	-0.35647								0	0	0	0.76781	1	6190	6190		5.2969	0	1		+		34686	10692	22033	22153	33393	33393					0.0405283422589946
TSYREHGGWH	10	Unmodified	_TSYREHGGWH_					0	0	0			REV__HRG|p.S271Y|1|0.29|ENSG00000113905|chr3:186677117-186677117|C/A|missense_variant	REV__HRG|p.S271Y|1|0.29|ENSG00000113905|chr3:186677117-186677117|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	615.2744750976562	2	615.275961	1228.53737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.895	1	15.731	15.231	16.231	-0.16364								0	0	0	0.95351	1	5161	5161		3.9444	0.66309	1		+		34687	16889	22034	22154	33394	33394					-0.06775883104478453
TSYTLTDLEP	10	Unmodified	_TSYTLTDLEP_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MSMS	HCT116MG_D190212_S4	4	570.2784423828125	2	570.276969	1138.53938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.973	1	34.587	34.087	35.087	-0.38606								0	0	0	0.90475	1	12791	12791		14.838	4.0143	1				34688	2504	22035	22155	33395	33395					-0.024343119298691818
TTALPKTK	8	Unmodified	_TTALPKTK_					0	0	0			REV__nc|ENSG00000047849|P27816-5|MAP4	REV__nc|ENSG00000047849|P27816-5|MAP4	MSMS	HCT116MG_D190212_S4	4	430.26458740234375	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.041	1	41.664	41.164	42.164	-0.37626								0	0	0	0.8837	1	15436	15436		2.3027	0	1		+		34689	10605	22036	22156	33396	33396					0.08254972902841473
TTATEALWHY	10	Unmodified	_TTATEALWHY_					0	0	0		ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	596.7858276367188	2	596.785296	1191.55604	0.85331	0.00050925	-0.1064	-6.3499E-05	0.74691	0.00044575	596.7850216892045	47.174	0.25924	47.052	46.922	47.182	-0.12175					7	4	2	0	0	0	0.13412	1	18029	18029		67.344	51.497	1	15051000			34690	6740	22037	22157	33397	33397					-0.032077662532856266
TTATWRVRII	10	Unmodified	_TTATWRVRII_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MSMS	HCT116MG_D190212_S1	1	406.2040710449219	3	406.24354	1215.70879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.379	1	57.379	56.879	57.879	0								0	0	0	0.96377	1	22079	22079		0.69767	0.07084	1				34691	5701	22038	22158	33398	33398					0.10956473933993038
TTCVYIRWRY	10	Unmodified	_TTCVYIRWRY_					0	0	0		KCNJ12|p.D77Y|1|0.1|ENSG00000184185|chr17:21415571-21415571|G/T|missense_variant	KCNJ12|p.D77Y|1|0.1|ENSG00000184185|chr17:21415571-21415571|G/T|missense_variant	KCNJ12|p.D77Y|1|0.1|ENSG00000184185|chr17:21415571-21415571|G/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	680.8438720703125	2	680.845165	1359.67578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.61	1	37.61	37.11	38.11	0								0	0	0	0.94339	1	14057	14057		6.2058	0	1				34692	9255	22039	22159	33399	33399					0.01032523819594644
TTDDPALLY	9	Unmodified	_TTDDPALLY_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-MSMS	HCT116MG_D190212_S2	2	1008.4892578125	1	1008.48842	1007.48114	0.73347	0.0007397	0.23537	0.00023737	0.96884	0.00097707	1008.488348093544	46.485	0.36029	46.373	46.162	46.522	-0.11121					10	6	2	0	0	0	0.011506	1	17723	17723		109.63	45.393	1	28029000			34693	5684	22040	22160	33400	33400					-0.02229948784508906
TTDDPALLY	9	Unmodified	_TTDDPALLY_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-MSMS	HCT116MG_D190212_S3	3	1008.488525390625	1	1008.48842	1007.48114	0.74467	0.00075099	-0.14304	-0.00014425	0.60163	0.00060674	1008.4881127973922	46.728	0.36484	46.414	46.229	46.594	-0.31405					14	6	3	0	0	0	0.011506	1	17509	17509		109.63	61.283	1	13566000			34694	5684	22040	22160	33401	33401					-0.02229948784508906
TTDDPALLY	9	Unmodified	_TTDDPALLY_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-MSMS	HCT116MG_D190212_S4	4	1008.4893188476562	1	1008.48842	1007.48114	0.73468	0.00074091	0.12395	0.000125	0.85862	0.00086591	1008.4884165497566	46.747	0.25813	46.376	46.226	46.484	-0.37134					7	4	2	0	0	0	0.019399	1	17284	17284		97.075	57.117	1	3543200			34695	5684	22040	22160	33402	33402					-0.02229948784508906
TTDDWKDF	8	Unmodified	_TTDDWKDF_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S2	2	514.2220458984375	2	514.221997	1026.42944	0.2271	0.00011678	0.27511	0.00014147	0.5022	0.00025824	514.2220600528003	42.013	0.46643	41.945	41.756	42.223	-0.068199					25	8	4	0	0	0	0.051049	1	15891	15891		122.18	72.246	1	243360000			34696	2274	22041	22161	33403	33403					-0.08271692478433579
TTDDWKDFL	9	Unmodified	_TTDDWKDFL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S2	2	570.764404296875	2	570.764029	1139.5135	0.39941	0.00022797	1.8228	0.0010404	2.2222	0.0012683	570.7641694287439	54.509	0.45947	54.32	54.099	54.559	-0.1894					23	8	4	0	0	0	0.0068427	2	21016	20978;21016		121.53	61.145	1	99585000			34697	2274	22042	22162	33404;33405	33405					-0.05067161381521146
TTDDWKDFLY	10	Unmodified	_TTDDWKDFLY_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S1	1	652.2962036132812	2	652.295693	1302.57683	0.81836	0.00053381	0.023648	1.5425E-05	0.842	0.00054924	652.2954926384795	54.711	0.20311	54.711	54.587	54.79	0					10	3	4	0	0	0	0.0089527	1	20990	20990		154.75	109.05	1	152280000			34698	2274	22043	22163	33406	33406					-0.0623522066427995
TTDDWKDFLY	10	Unmodified	_TTDDWKDFLY_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S2	2	652.2959594726562	2	652.295693	1302.57683	0.59168	0.00038595	0.11863	7.7383E-05	0.71031	0.00046333	652.2957512114513	54.877	0.30697	54.689	54.56	54.867	-0.18797					17	5	5	0	0	0	0.0089527	1	21160	21160		154.75	109.05	1	838250000			34699	2274	22043	22163	33407	33407					-0.0623522066427995
TTDDWKDFLY	10	Unmodified	_TTDDWKDFLY_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S2	2	1303.5850830078125	1	1303.58411	1302.57683	0.59824	0.00077985	0.46616	0.00060768	1.0644	0.0013875	1303.5848234531495	54.927	0.15397	54.739	54.611	54.765	-0.18797					6	2	3	0	0	0	0.021392	1	21168	21168		117.84	85.532	1	32125000			34700	2274	22043	22163	33408	33408					-0.0623522066427995
TTDDWKDFLY	10	Unmodified	_TTDDWKDFLY_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S3	3	652.2967529296875	2	652.295693	1302.57683	0.63939	0.00041707	0.22019	0.00014363	0.85958	0.0005607	652.2957978977735	54.983	0.26145	54.691	54.56	54.822	-0.2918					12	4	4	0	0	0	0.011036	1	20862	20862		143.21	105.24	1	79187000			34701	2274	22043	22163	33409	33409					-0.0623522066427995
TTDDWKDFLY	10	Unmodified	_TTDDWKDFLY_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-MSMS	HCT116MG_D190212_S4	4	652.296142578125	2	652.295693	1302.57683	0.66529	0.00043397	0.10254	6.6885E-05	0.76783	0.00050085	652.2956187032615	55.011	0.20869	54.693	54.563	54.771	-0.31774					7	3	3	0	0	0	0.12401	1	20612	20612		69.338	50.081	1	15634000			34702	2274	22043	22163	33410	33410					-0.0623522066427995
TTDENKVPY	9	Unmodified	_TTDENKVPY_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MSMS	HCT116MG_D190212_S2	2	533.7561645507812	2	533.756204	1065.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.899	1	26.547	26.047	27.047	-0.35254								0	0	0	0.038113	1	9750	9750		74.929	33.089	1			+	34703	2210	22044	22164	33411	33411					-0.03227447898552782
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000512472.5_1_6:43484832-43487226:+|nuORF;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	611.2567749023438	2	611.256568	1220.49858	0.69007	0.00042181	-0.064787	-3.9602E-05	0.62528	0.00038221	611.2564887561367	41.751	1.4891	41.751	40.946	42.435	0					65	28	3	0	0	0	6.0167E-07	2	15810	15570;15810		181.69	151.05	1	36332000			34704	5193	22045	22165	33412;33413	33413					-0.10284653249505027
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000512472.5_1_6:43484832-43487226:+|nuORF;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1221.5081787109375	1	1221.50586	1220.49858	0.87409	0.0010677	-0.157	-0.00019178	0.71709	0.00087593	1221.505553716359	41.712	1.2497	41.712	41.081	42.33	0					36	23	2	0	0	0	0.034344	1	15608	15608		110.55	74.426	1	11627000			34705	5193	22045	22165	33414	33414					-0.10284653249505027
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000512472.5_1_6:43484832-43487226:+|nuORF;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	611.2565307617188	2	611.256568	1220.49858	0.57402	0.00035087	-0.34453	-0.00021059	0.22949	0.00014028	611.2562619697997	41.694	1.8088	41.626	40.882	42.691	-0.068199					99	34	4	0	0	0	0.036048	3	15784	15547;15784;16015		114.2	96.055	1	147240000			34706	5193	22045	22165	33415;33416;33417	33416					-0.10284653249505027
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000512472.5_1_6:43484832-43487226:+|nuORF;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1221.5068359375	1	1221.50586	1220.49858	0.60626	0.00074055	0.13253	0.00016189	0.73879	0.00090244	1221.5059106661952	41.543	1.6008	41.474	40.882	42.483	-0.068199					77	30	4	0	0	0	0.0038737	2	15893	15647;15893		143.91	87.732	1	66883000			34707	5193	22045	22165	33418;33419	33419					-0.10284653249505027
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000512472.5_1_6:43484832-43487226:+|nuORF;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1221.507080078125	1	1221.50586	1220.49858	0.56678	0.00069232	-0.019236	-2.3497E-05	0.54754	0.00066883	1221.5058584167796	41.808	1.0311	41.505	41.271	42.302	-0.30257					38	24	2	0	0	0	0.060849	1	15535	15535		96.367	68.738	1	5760300			34708	5193	22045	22165	33420	33420					-0.10284653249505027
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000512472.5_1_6:43484832-43487226:+|nuORF;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	611.882568359375	2	611.256568	1220.49858	0.849	0.00051895	-0.84722	-0.00051787	0.001776	1.0856E-06	611.2558681760186	42.049	0.94858	41.672	41.356	42.305	-0.37615					24	19	2	0	0	0	0.70377	3	15491	15377;15491;15614		20.415	15.886	1	2771900			34709	5193	22045	22165	33421;33422;33423	33422					-0.10284653249505027
TTDKKSLAY	9	Unmodified	_TTDKKSLAY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MSMS	HCT116MG_D190212_S1	1	513.7769165039062	2	513.776939	1025.53933	0.38589	0.00019826	-0.11781	-6.0528E-05	0.26808	0.00013773	513.7767540534579	21.828	0.31275	21.828	21.646	21.959	0					11	5	3	0	0	0	0.0096585	1	7701	7701		114.19	76.011	1	44796000			34710	1152	22046	22166	33424	33424					0.027577328607549134
TTDKKSLAY	9	Unmodified	_TTDKKSLAY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MSMS	HCT116MG_D190212_S2	2	513.7772827148438	2	513.776939	1025.53933	0.37311	0.00019169	0.23598	0.00012124	0.60909	0.00031294	513.7769676042549	22.41	0.4143	22.025	21.843	22.258	-0.3852					22	7	4	0	0	0	0.0051419	1	7938	7938		136.39	84.762	1	181580000			34711	1152	22046	22166	33425	33425					0.027577328607549134
TTDKKSLAY	9	Unmodified	_TTDKKSLAY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MSMS	HCT116MG_D190212_S2	2	1026.5467529296875	1	1026.5466	1025.53933	0.66868	0.00068643	0.27342	0.00028067	0.9421	0.00096711	1026.54636864051	22.41	0.20717	22.025	21.895	22.103	-0.3852					5	3	2	0	0	0	0.0064416	1	7962	7962		125.04	71.205	1	13306000			34712	1152	22046	22166	33426	33426					0.027577328607549134
TTDKKSLAY	9	Unmodified	_TTDKKSLAY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MSMS	HCT116MG_D190212_S3	3	513.7769775390625	2	513.776939	1025.53933	0.17479	8.9804E-05	0.26143	0.00013432	0.43623	0.00022412	513.7769588526102	21.595	0.4215	21.614	21.43	21.851	0.018446					18	7	4	0	0	0	0.01386	1	7534	7534		103.82	58.124	1	38509000			34713	1152	22046	22166	33427	33427					0.027577328607549134
TTDKKSLAY	9	Unmodified	_TTDKKSLAY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MSMS	HCT116MG_D190212_S4	4	513.7775268554688	2	513.776939	1025.53933	0.26109	0.00013414	-0.040379	-2.0746E-05	0.22071	0.0001134	513.776976262761	21.982	0.31167	21.754	21.624	21.936	-0.22777					11	5	3	0	0	0	0.0096585	2	7630	7627;7630		114.19	70.414	1	7244500			34714	1152	22046	22166	33428;33429	33429					0.027577328607549134
TTDLELIKY	9	Unmodified	_TTDLELIKY_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-MSMS	HCT116MG_D190212_S1	1	548.2999267578125	2	548.300247	1094.58594	0.60461	0.00033151	-0.50039	-0.00027437	0.10422	5.7143E-05	548.299790826804	46.615	0.25845	46.615	46.44	46.699	0					12	4	3	0	0	0	0.0035933	1	17683	17683		176.84	77.038	1	52146000			34715	4669	22047	22167	33430	33430					0.042431726920540314
TTDLELIKY	9	Unmodified	_TTDLELIKY_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-MSMS	HCT116MG_D190212_S2	2	548.3005981445312	2	548.300247	1094.58594	0.82051	0.00044989	-0.24466	-0.00013415	0.57585	0.00031574	548.2998646098875	46.659	0.56439	46.548	46.369	46.933	-0.11121					23	10	4	0	0	0	0.0035933	1	17779	17779		176.84	77.038	1	196070000			34716	4669	22047	22167	33431	33431					0.042431726920540314
TTDLELIKY	9	Unmodified	_TTDLELIKY_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-MSMS	HCT116MG_D190212_S2	2	1095.5941162109375	1	1095.59322	1094.58594	1.0386	0.0011379	-0.10644	-0.00011661	0.93218	0.0010213	1095.5928564806104	46.659	0.20579	46.548	46.42	46.626	-0.11121					6	3	2	0	0	0	0.0063854	1	17808	17808		125.53	25.73	1	17192000			34717	4669	22047	22167	33432	33432					0.042431726920540314
TTDLELIKY	9	Unmodified	_TTDLELIKY_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1;nc|ENSG00000164109|Q13257-2|MAD2L1;ENST00000511295.1_1_4:120986776-120987958:-|nuORF	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-MSMS	HCT116MG_D190212_S3	3	548.3004150390625	2	548.300247	1094.58594	0.50543	0.00027713	0.16819	9.2217E-05	0.67362	0.00036935	548.3002559166413	46.882	0.26078	46.568	46.437	46.698	-0.31405					11	4	3	0	0	0	0.0034607	1	17599	17599		163.04	63.237	1	15270000			34718	4669	22047	22167	33433	33433					0.042431726920540314
TTDLFGRDL	9	Unmodified	_TTDLFGRDL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2670288085938	2	519.266739	1036.51892	0.59426	0.00030858	-0.40685	-0.00021126	0.18741	9.7315E-05	519.2664681598177	47.998	0.45893	47.865	47.636	48.095	-0.13281					15	8	4	0	0	0	0.016412	1	18304	18304		100.09	34.856	1	391120000			34719	5093	22048	22168	33434	33434					0.002125622009543804
TTDLFGRDL	9	Unmodified	_TTDLFGRDL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	519.266739	1036.51892	0.28314	0.00014702	-0.26113	-0.00013559	0.022013	1.1431E-05	519.2666311516374	48.205	0.15649	47.889	47.775	47.932	-0.31596	0.012079	6.5537E-05	NaN	100.09	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3235900			34720	5093	22048	22168							0.002125622009543804
TTDLFGRDLS	10	Unmodified	_TTDLFGRDLS_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	HCT116MG_D190212_S2	2	562.7827758789062	2	562.782753	1123.55095	0.32248	0.00018149	-0.38889	-0.00021886	-0.066408	-3.7373E-05	562.78260544936	44.333	0.26209	44.249	44.063	44.325	-0.084797					8	4	2	0	0	0	0.026695	1	16850	16850		108.26	35.294	1	36580000			34721	5093	22049	22169	33435	33435					-0.005880701158957891
TTDLFGRDLSY	11	Unmodified	_TTDLFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	HCT116MG_D190212_S1	1	644.3146362304688	2	644.314417	1286.61428	0.66221	0.00042667	0.012565	8.0961E-06	0.67477	0.00043477	644.314432405575	49.311	0.56766	49.311	49.131	49.699	0					29	10	6	0	0	0	6.3816E-07	1	18770	18770		180.74	129.11	1	1454100000			34722	5093	22050	22170	33436	33436					-0.017561293986545934
TTDLFGRDLSY	11	Unmodified	_TTDLFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	HCT116MG_D190212_S1	1	1287.623046875	1	1287.62156	1286.61428	0.63502	0.00081766	0.25375	0.00032674	0.88877	0.0011444	1287.6218155170566	49.311	0.20563	49.311	49.183	49.389	0					9	3	3	0	0	0	8.9367E-11	1	18793	18793		213.63	162.22	1	41651000			34723	5093	22050	22170	33437	33437					-0.017561293986545934
TTDLFGRDLSY	11	Unmodified	_TTDLFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	HCT116MG_D190212_S2	2	644.3147583007812	2	644.314417	1286.61428	0.40988	0.00026409	0.027137	1.7485E-05	0.43702	0.00028158	644.3144683940908	49.417	0.81466	49.263	49.086	49.901	-0.15405					45	15	5	0	0	0	6.3816E-07	2	18893	18893;18961		180.74	131.18	1	2312600000			34724	5093	22050	22170	33438;33439	33438					-0.017561293986545934
TTDLFGRDLSY	11	Unmodified	_TTDLFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	HCT116MG_D190212_S2	2	1288.6285400390625	1	1287.62156	1286.61428	0.38892	0.00050078	-0.15165	-0.00019527	0.23727	0.00030551	1287.6211654031995	49.417	0.30466	49.263	49.137	49.441	-0.15405					15	5	4	0	0	0	0.012403	1	18926	18926		135.87	98.8	1	115710000			34725	5093	22050	22170	33440	33440					-0.017561293986545934
TTDLFGRDLSY	11	Unmodified	_TTDLFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	HCT116MG_D190212_S3	3	644.314453125	2	644.314417	1286.61428	0.45695	0.00029442	-0.36559	-0.00023555	0.091361	5.8865E-05	644.3140985884988	49.683	0.41722	49.367	49.184	49.601	-0.31596					17	7	3	0	0	0	6.3816E-07	1	18717	18717		180.74	136.96	1	52233000			34726	5093	22050	22170	33441	33441					-0.017561293986545934
TTDQLSILNY	10	Unmodified	_TTDQLSILNY_					0	0	0		ENST00000463651.1_1_3:197670645-197672498:-|nuORF;ENST00000480302.5_1_3:197665562-197672498:-|nuORF;IQCG|p.E412Dfs*8|1|0.52|ENSG00000114473|chr3:197889675-197889676|TT/-|frameshift_variant;ENSG00000114473|ENST00000265239|IQCG	ENST00000463651.1_1_3:197670645-197672498:-|nuORF	ENST00000463651.1_1_3:197670645-197672498:-|nuORF	MSMS	HCT116MG_D190212_S2	2	584.2986450195312	2	584.298236	1166.58192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.291	1	54.102	53.602	54.602	-0.1894								0	0	0	0.90291	1	20898	20898		15.248	2.7169	1				34727	2421	22051	22171	33442	33442					0.0052908319835296425
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	568.2304077148438	2	568.23055	1134.44655	0.29845	0.00016959	0.11421	6.4896E-05	0.41266	0.00023448	568.2305143798503	25.019	0.36685	25.019	24.83	25.197	0					14	6	3	0	0	0	0.011999	2	8977	8951;8977		139.14	110.65	1	22483000			34728	6659	22052	22172	33443;33444	33444					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1135.45361328125	1	1135.45382	1134.44655	0.56002	0.00063588	0.17071	0.00019384	0.73073	0.00082971	1135.4540794693655	25.013	0.2621	25.013	24.83	25.092	0					7	4	2	0	0	0	0.02502	1	8989	8989		111.29	92.03	1	6428800			34729	6659	22052	22172	33445	33445					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	568.2310180664062	2	568.23055	1134.44655	0.45276	0.00025727	0.16058	9.1245E-05	0.61333	0.00034851	568.2305189887314	25.322	0.72869	24.947	24.712	25.44	-0.37521					32	13	4	0	0	0	0.015316	1	9097	9097		131.27	131.27	1	171770000			34730	6659	22052	22172	33446	33446					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1135.4539794921875	1	1135.45382	1134.44655	0.63522	0.00072126	-0.17839	-0.00020256	0.45683	0.00051871	1135.4535626307982	25.321	0.36506	24.945	24.764	25.129	-0.37521					18	6	4	0	0	0	0.0053802	1	9112	9112		166.45	137.96	1	67928000			34731	6659	22052	22172	33447	33447					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	568.2307739257812	2	568.23055	1134.44655	0.53725	0.00030528	-0.05027	-2.8565E-05	0.48698	0.00027672	568.2304572858691	25.232	0.88541	25.126	24.891	25.776	-0.10618					42	16	5	0	0	0	0.0093752	1	8982	8982		152.41	123.93	1	162180000			34732	6659	22052	22172	33448	33448					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1135.4544677734375	1	1135.45382	1134.44655	0.5136	0.00058317	0.15807	0.00017948	0.67167	0.00076265	1135.4539431513094	25.232	0.46871	25.126	24.943	25.412	-0.10618					22	8	4	0	0	0	0.0053802	1	9001	9001		166.45	137.96	1	44977000			34733	6659	22052	22172	33449	33449					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	568.2306518554688	2	568.23055	1134.44655	0.63829	0.0003627	-0.11217	-6.3739E-05	0.52612	0.00029896	568.2304453787777	25.416	0.52027	25.136	24.954	25.474	-0.27958					16	9	2	0	0	0	0.0022189	1	8985	8985		174.73	146.24	1	48088000			34734	6659	22052	22172	33450	33450					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant;TAF15|p.Y531Lfs*56|1|0.31|ENSG00000270647|chr17:35844881-35844882|-/G|frameshift_variant;nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	TAF15|p.E285Rfs*41|1|0.28|ENSG00000270647|chr17:35838489-35838489|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	1135.4537353515625	1	1135.45382	1134.44655	0.65262	0.00074102	-0.34034	-0.00038644	0.31228	0.00035457	1135.4533385775221	25.416	0.31209	25.136	24.954	25.266	-0.27958					11	5	3	0	0	0	0.011999	1	9008	9008		139.14	105.04	1	11043000			34735	6659	22052	22172	33451	33451					-0.11529816663278325
TTDTVIRSY	9	Unmodified	_TTDTVIRSY_					0	0	0		nc|ENSG00000185917|Q9NVD3-3|SETD4;ENSG00000185917|ENST00000332131|SETD4;nc|ENSG00000185917|Q9NVD3-4|SETD4	nc|ENSG00000185917|Q9NVD3-3|SETD4	nc|ENSG00000185917|Q9NVD3-3|SETD4	MULTI-MSMS	HCT116MG_D190212_S1	1	528.2721557617188	2	528.272021	1054.52949	0.33563	0.0001773	0.074247	3.9222E-05	0.40988	0.00021653	528.2719701510824	30.321	0.3049	30.321	30.146	30.451	0					11	5	3	0	0	0	0.0041644	1	11104	11104		148.27	75.3	1	11051000			34736	5854	22053	22173	33452	33452					0.0044054485538254085
TTDTVIRSY	9	Unmodified	_TTDTVIRSY_					0	0	0		nc|ENSG00000185917|Q9NVD3-3|SETD4;ENSG00000185917|ENST00000332131|SETD4;nc|ENSG00000185917|Q9NVD3-4|SETD4	nc|ENSG00000185917|Q9NVD3-3|SETD4	nc|ENSG00000185917|Q9NVD3-3|SETD4	MULTI-MATCH	HCT116MG_D190212_S2	2		2	528.272021	1054.52949	0.21884	0.00011561	-3.7431	-0.0019774	-3.5242	-0.0018617	528.7701785316025	30.676	0.20555	30.409	30.251	30.456	-0.26704	0.04391	-0.0039421	NaN	148.27	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12625000			34737	5854	22053	22173							0.0044054485538254085
TTEDQYPYS	9	Unmodified	_TTEDQYPYS_					0	0	0		USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.W2964Gfs*10|1|0.21|ENSG00000042781|chr1:215845989-215845989|A/-|frameshift_variant;USH2A|p.T3753Lfs*31|1|0.37|ENSG00000042781|chr1:215758727-215758727|T/-|frameshift_variant;USH2A|p.V1147Gfs*56|1|0.38|ENSG00000042781|chr1:216199998-216199999|-/C|frameshift_variant;nc|ENSG00000042781|O75445-2|USH2A;USH2A|p.F1618Lfs*17|1|0.36|ENSG00000042781|chr1:216089044-216089044|A/-|frameshift_variant	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	USH2A|p.E5096Gfs*82|1|0.44|ENSG00000042781|chr1:215634469-215634470|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	552.23095703125	2	552.230019	1102.44548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.277	1	20.277	19.777	20.777	0								0	0	0	0.76818	1	7078	7078		7.2892	1.0834	1				34738	1012	22054	22174	33453	33453					-0.10164031032195453
TTEDTEHLVY	10	Unmodified	_TTEDTEHLVY_					0	0	0		ENST00000563135.5_1_15:41146443-41149170:+|nuORF;ENSG00000166145|ENST00000562057|SPINT1;nc|ENSG00000166145|O43278|SPINT1	ENST00000563135.5_1_15:41146443-41149170:+|nuORF	ENST00000563135.5_1_15:41146443-41149170:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	604.2778930664062	2	604.2775	1206.54045	0.58227	0.00035185	0.14254	8.6132E-05	0.72481	0.00043798	604.2775108122635	35.003	0.35871	35.003	34.804	35.163	0					14	6	4	0	0	0	1.5954E-06	1	13004	13004		205.78	163.82	1	42482000			34739	4823	22055	22175	33454	33454					-0.05456097561000206
TTEDTEHLVY	10	Unmodified	_TTEDTEHLVY_					0	0	0		ENST00000563135.5_1_15:41146443-41149170:+|nuORF;ENSG00000166145|ENST00000562057|SPINT1;nc|ENSG00000166145|O43278|SPINT1	ENST00000563135.5_1_15:41146443-41149170:+|nuORF	ENST00000563135.5_1_15:41146443-41149170:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	604.278564453125	2	604.2775	1206.54045	0.74695	0.00045137	0.2304	0.00013923	0.97736	0.0005906	604.27751536467	35.092	0.36206	34.934	34.761	35.123	-0.15834					17	6	4	0	0	0	1.3432E-05	1	13066	13066		197.17	155.21	1	84181000			34740	4823	22055	22175	33455	33455					-0.05456097561000206
TTEERTQLY	9	Unmodified	_TTEERTQLY_					0	0	0		nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13;ENST00000471302.2_1_1:231047214-231057243:-|nuORF	nc|ENSG00000143643|Q8NBP0-2|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	MULTI-SECPEP	HCT116MG_D190212_S1	1	571.2546997070312	2	570.78021	1139.54587	0.58105	0.00033165	0.019506	1.1134E-05	0.60056	0.00034279	570.7799422353615	28.347	0.26542	28.347	28.216	28.482	0					7	4	2	0	0	0	0.15584	1	10349	10349		49.554	32.441	1	6617500			34741	3826	22056	22176	33456	33456					-0.0183237397850462
TTEERTQLY	9	Unmodified	_TTEERTQLY_					0	0	0		nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13;ENST00000471302.2_1_1:231047214-231057243:-|nuORF	nc|ENSG00000143643|Q8NBP0-2|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	MULTI-MSMS	HCT116MG_D190212_S3	3	570.7803955078125	2	570.78021	1139.54587	0.63978	0.00036518	-0.024111	-1.3762E-05	0.61567	0.00035141	570.7801359286119	28.83	0.36439	28.608	28.421	28.786	-0.22195					12	6	3	0	0	0	0.0055242	1	10457	10457		133.05	91.213	1	20855000			34742	3826	22056	22176	33457	33457					-0.0183237397850462
TTEERTQLY	9	Unmodified	_TTEERTQLY_					0	0	0		nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13;ENST00000471302.2_1_1:231047214-231057243:-|nuORF	nc|ENSG00000143643|Q8NBP0-2|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	MULTI-MSMS	HCT116MG_D190212_S4	4	570.7802734375	2	570.78021	1139.54587	0.58322	0.00033289	-0.27477	-0.00015683	0.30845	0.00017606	570.7798551391567	29.019	0.20775	28.678	28.574	28.782	-0.34059					6	3	2	0	0	0	0.014023	1	10478	10478		103.42	63.47	1	4269700			34743	3826	22056	22176	33458	33458					-0.0183237397850462
TTEESLRNYY	10	Unmodified	_TTEESLRNYY_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MSMS	HCT116MG_D190212_S1	1	638.2968139648438	2	638.296224	1274.5779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.668	1	35.668	35.168	36.168	0								0	0	0	1.1923E-06	1	13275	13275		152.89	82.554	1				34744	2769	22057	22177	33459	33459					-0.048410062953507804
TTEESLRNYY	10	Unmodified	_TTEESLRNYY_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S2	2	638.2959594726562	2	638.296224	1274.5779	0.53904	0.00034407	-0.047624	-3.0398E-05	0.49142	0.00031367	638.2960874245864	35.65	0.35969	35.507	35.283	35.643	-0.14245					17	6	4	0	0	0	0.0015699	1	13296	13296		176.43	126.87	1	84437000			34745	2769	22057	22177	33460	33460					-0.048410062953507804
TTEESLRNYY	10	Unmodified	_TTEESLRNYY_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S3	3	638.2974853515625	2	638.296224	1274.5779	0.60496	0.00038614	0.62445	0.00039858	1.2294	0.00078472	638.2965902770327	35.826	0.17663	35.526	35.449	35.626	-0.30042					6	3	2	0	0	0	0.011502	1	13238	13238		140.63	91.106	1	6538200			34746	2769	22057	22177	33461	33461					-0.048410062953507804
TTEQHGARY	9	Unmodified	_TTEQHGARY_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	HCT116MG_D190212_S1	1	531.75146484375	2	531.751787	1061.48902	0.31856	0.0001694	0.18537	9.8572E-05	0.50393	0.00026797	531.7518635562948	15.822	0.20818	15.822	15.692	15.9	0					6	3	2	0	0	0	0.0056012	1	5295	5295		132.38	77.606	1	18494000			34747	6507	22058	22178	33462	33462					-0.039263767443799225
TTEQHGARY	9	Unmodified	_TTEQHGARY_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7518920898438	2	531.751787	1061.48902	0.31111	0.00016543	-0.34278	-0.00018228	-0.031673	-1.6842E-05	531.7515157769774	12.17	0.15328	11.881	11.789	11.942	-0.28953					8	4	2	0	0	0	0.23138	1	3966	3966		37.974	16.227	1	450570			34748	6507	22058	22178	33463	33463					-0.039263767443799225
TTEQHGARY	9	Unmodified	_TTEQHGARY_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-MSMS	HCT116MG_D190212_S2	2	531.7518920898438	2	531.751787	1061.48902	0.36876	0.00019609	-0.11293	-6.0053E-05	0.25582	0.00013603	531.7516844174663	16.154	0.57429	15.82	15.637	16.211	-0.33451					16	10	2	0	0	0	0.0029864	2	5420	5420;5495		181.69	119.12	1	32785000			34749	6507	22058	22178	33464;33465	33464					-0.039263767443799225
TTEQHGARY	9	Unmodified	_TTEQHGARY_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MSMS	HCT116MG_D190212_S2	2	354.83734130859375	3	354.83695	1061.48902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.206	1	11.917	11.417	12.417	-0.28953								0	0	0	0.76973	1	3981	3981		0.96228	0.18574	1				34750	6507	22058	22178	33466	33466					-0.039263767443799225
TTESEVMKY	9	Unmodified	_TTESEVMKY_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S1	1	544.2520141601562	2	544.25244	1086.49033	0.62836	0.00034199	-0.56141	-0.00030555	0.066954	3.644E-05	544.2520498242113	31.466	0.26021	31.466	31.336	31.596	0					8	4	2	0	0	0	0.0060369	1	11585	11585		155.03	102.76	1	13424000			34751	1727	22059	22179	33467	33467					-0.04945923490504356
TTESEVMKY	9	Unmodified	_TTESEVMKY_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S2	2	544.2526245117188	2	544.25244	1086.49033	0.71888	0.00039125	0.10503	5.7165E-05	0.82391	0.00044842	544.2523572164365	31.648	0.26	31.399	31.25	31.51	-0.24883					10	4	3	0	0	0	0.0052024	1	11697	11697		163.04	110.77	1	26861000			34752	1727	22059	22179	33468	33468					-0.04945923490504356
TTESEVMKY	9	Unmodified	_TTESEVMKY_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	HCT116MG_D190212_S3	3	544.2523803710938	2	544.25244	1086.49033	0.37362	0.00020334	-0.012365	-6.7299E-06	0.36125	0.00019661	544.2522298105887	31.859	0.20826	31.589	31.43	31.638	-0.27028					6	3	2	0	0	0	0.025331	1	11646	11646		110.67	58.406	1	7396300			34753	1727	22059	22179	33469	33469					-0.04945923490504356
TTESEVMKY	9	Unmodified	_TTESEVMKY_					0	0	0		ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P247Tfs*9|1|0.28|ENSG00000100714|chr14:64424808-64424809|-/A|frameshift_variant;MTHFD1|p.N682*|1|0.41|ENSG00000100714|chr14:64442303-64442304|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF	ENSG00000100714|ENST00000652337|MTHFD1	ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	544.25244	1086.49033	0.39645	0.00021577	-1.1083	-0.0006032	-0.71187	-0.00038744	544.2510988197247	31.964	0.20758	31.588	31.434	31.642	-0.37529	0.077709	-0.00090588	NaN	163.04	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1434400			34754	1727	22059	22179							-0.04945923490504356
TTESQELSRY	10	Unmodified	_TTESQELSRY_					0	0	0		NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant;ENSG00000151503|ENST00000534548|NCAPD3	NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant	NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	607.2899169921875	2	607.288399	1212.56225	0.64566	0.0003921	0.82974	0.00050389	1.4754	0.00089599	607.2886294351314	29.399	0.3128	29.399	29.164	29.477	0					7	5	2	0	0	0	0.088136	1	10758	10758		96.936	36.862	1	7025300			34755	4117	22060	22180	33470	33470					-0.03553292812421205
TTESQELSRY	10	Unmodified	_TTESQELSRY_					0	0	0		NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant;ENSG00000151503|ENST00000534548|NCAPD3	NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant	NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	608.2824096679688	2	607.288399	1212.56225	0.87159	0.0005293	0.37874	0.00023	1.2503	0.00075931	607.288673712482	29.719	0.20654	29.418	29.237	29.444	-0.30095					7	3	3	0	0	0	0.6572	1	10869	10869		33.445	20.402	1	21166000			34756	4117	22060	22180	33471	33471					-0.03553292812421205
TTETGKENNP	10	Unmodified	_TTETGKENNP_					0	0	0		KSR2|p.V182M|1|0.23|ENSG00000171435|chr12:117761453-117761453|C/T|missense_variant;KSR2|p.L536Sfs*61|3|0.48|ENSG00000171435|chr12:117539800-117539800|G/-|frameshift_variant;ENSG00000171435|ENST00000339824|KSR2	KSR2|p.V182M|1|0.23|ENSG00000171435|chr12:117761453-117761453|C/T|missense_variant	KSR2|p.V182M|1|0.23|ENSG00000171435|chr12:117761453-117761453|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	546.2833251953125	2	545.754192	1089.49383	0.61074	0.00033332	-0.9372	-0.00051148	-0.32645	-0.00017816	546.255153440096	35.709	0.15448	35.566	35.437	35.592	-0.14245					4	2	2	0	0	0	0.29999	1	13311	13311		5.2969	3.9674	1	7690500			34757	5192	22061	22181	33472	33472					-0.04733537392280596
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	HCT116MG_D190212_S1	1	544.7669067382812	2	544.766571	1087.51859	0.63392	0.00034534	-0.018456	-1.0054E-05	0.61546	0.00033528	544.7664697178777	35.501	0.25811	35.501	35.371	35.63	0					12	4	3	0	0	0	1.0633E-05	1	13214	13214		214.7	129.35	1	86594000			34758	2924	22062	22182	33473	33473					-0.021668575189096373
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	HCT116MG_D190212_S2	2	544.7664184570312	2	544.766571	1087.51859	0.48412	0.00026373	-0.050321	-2.7413E-05	0.4338	0.00023632	544.7664208633876	35.578	0.35969	35.435	35.283	35.643	-0.14245					22	6	4	0	0	0	0.003294	1	13273	13273		180.01	94.653	1	273530000			34759	2924	22062	22182	33474	33474					-0.021668575189096373
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	HCT116MG_D190212_S2	2	1088.5267333984375	1	1088.52587	1087.51859	0.54021	0.00058803	0.25851	0.0002814	0.79872	0.00086943	1088.526066508196	35.59	0.25733	35.447	35.283	35.541	-0.14245					8	4	2	0	0	0	1.0633E-05	1	13299	13299		214.7	133.09	1	33134000			34760	2924	22062	22182	33475	33475					-0.021668575189096373
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	HCT116MG_D190212_S3	3	544.7664184570312	2	544.766571	1087.51859	0.60128	0.00032756	-0.39371	-0.00021448	0.20757	0.00011308	544.7662476028406	35.815	0.44555	35.514	35.388	35.834	-0.30042					13	6	3	0	0	0	1.0633E-05	3	13192	13176;13192;13277		214.7	140.28	1	23690000			34761	2924	22062	22182	33476;33477;33478	33477					-0.021668575189096373
TTFARAKTY	9	Unmodified	_TTFARAKTY_					0	0	0		ENST00000572844.1_1_17:7399627-7399921:+|nuORF	ENST00000572844.1_1_17:7399627-7399921:+|nuORF	ENST00000572844.1_1_17:7399627-7399921:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.814208984375	2	529.785099	1057.55564	0.60314	0.00031954	-0.39044	-0.00020685	0.2127	0.00011269	529.7848596424371	41.592	0.30799	41.523	41.345	41.653	-0.068199					10	5	2	0	0	0	0.23771	1	15724	15724		20.454	1.1966	1	38146000			34762	8906	22063	22183	33479	33479					0.029168588175252808
TTFPRPVTV	9	Unmodified	_TTFPRPVTV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MSMS	HCT116MG_D190212_S1	1	509.290771484375	2	509.290017	1016.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.622	1	39.622	39.122	40.122	0								0	0	0	0.11662	1	14869	14869		53.404	20.618	1				34763	3974	22064	22184	33480	33480					0.057860468229023354
TTFPRPVTV	9	Unmodified	_TTFPRPVTV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;nc|ENSG00000147140|Q15233-2|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-SECPEP	HCT116MG_D190212_S1	1	508.7723388671875	2	509.290017	1016.56548	0.17024	8.6701E-05	0.33749	0.00017188	0.50773	0.00025858	509.290214969252	39.527	0.25924	39.527	39.346	39.605	0					7	4	2	0	0	0	0.12796	1	14837	14837		59.368	30.287	1	4895800			34764	3974	22064	22184	33481	33481					0.057860468229023354
TTGAGHQVNAP	11	Unmodified	_TTGAGHQVNAP_					0	0	0		ENST00000424946.1_1_12:105351922-105352012:-|nuORF	ENST00000424946.1_1_12:105351922-105352012:-|nuORF	ENST00000424946.1_1_12:105351922-105352012:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	527.261962890625	2	526.759612	1051.50467	-0.0055161	-2.9056E-06	-0.0073198	-3.8558E-06	-0.012836	-6.7614E-06	526.7593878365346	17.155	0.51705	16.985	16.708	17.225	-0.17047					15	9	2	0	0	0	0.70991	1	5664	5664		18.146	1.0335	1	1195500			34765	7808	22065	22185	33482	33482					-0.019020902273268803
TTGAGHQVNAP	11	Unmodified	_TTGAGHQVNAP_					0	0	0		ENST00000424946.1_1_12:105351922-105352012:-|nuORF	ENST00000424946.1_1_12:105351922-105352012:-|nuORF	ENST00000424946.1_1_12:105351922-105352012:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	528.259765625	2	526.759612	1051.50467	0.24655	0.00012987	-0.089358	-4.707E-05	0.15719	8.2802E-05	526.7597276092254	23.074	1.0967	22.836	22.445	23.542	-0.23758					61	20	5	0	0	0	0.71532	1	8004	8004		16.149	6.0752	1	726420000			34766	7808	22065	22185	33483	33483					-0.019020902273268803
TTGEVPRPGPL	11	Unmodified	_TTGEVPRPGPL_					0	0	0			REV__ENST00000404930.1_1_6:106115422-106115650:+|nuORF	REV__ENST00000404930.1_1_6:106115422-106115650:+|nuORF	MSMS	HCT116MG_D190212_S4	4	562.6671142578125	2	562.308938	1122.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.536	1	38.154	37.654	38.654	-0.38163								0	0	0	0.94416	1	14127	14127		9.3831	0	1		+		34767	15405	22066	22186	33484	33484					0.04692513017721467
TTGGGRGG	8	Unmodified	_TTGGGRGG_					0	0	0			REV__SV2A|p.E138Gfs*16|1|0.03|ENSG00000159164|chr1:149913428-149913429|-/C|frameshift_variant	REV__SV2A|p.E138Gfs*16|1|0.03|ENSG00000159164|chr1:149913428-149913429|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	662.322021484375	1	662.321628	661.314351	0.82642	0.00054736	0.65711	0.00043522	1.4835	0.00098258	662.3219114187634	35.092	1.5005	35.092	34.597	36.098	0					54	28	3	0	0	0	0.84759	2	13233	13008;13233		5.7604	3.1829	1	1383400000	+		34768	17605	22067	22187	33485;33486	33486					-0.029853320988877385
TTGGGRGG	8	Unmodified	_TTGGGRGG_					0	0	0			REV__SV2A|p.E138Gfs*16|1|0.03|ENSG00000159164|chr1:149913428-149913429|-/C|frameshift_variant	REV__SV2A|p.E138Gfs*16|1|0.03|ENSG00000159164|chr1:149913428-149913429|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	662.3220825195312	1	662.321628	661.314351	0.40062	0.00026534	0.024042	1.5924E-05	0.42466	0.00028126	662.3214499419244	35.309	1.1759	35.166	34.932	36.108	-0.14245					51	22	3	0	0	0	0.87685	3	13127	13127;13194;13252		0.6015	0	1	2124899999.9999998	+		34769	17605	22067	22187	33487;33488;33489	33487					-0.029853320988877385
TTGGGRGG	8	Unmodified	_TTGGGRGG_					0	0	0			REV__SV2A|p.E138Gfs*16|1|0.03|ENSG00000159164|chr1:149913428-149913429|-/C|frameshift_variant	REV__SV2A|p.E138Gfs*16|1|0.03|ENSG00000159164|chr1:149913428-149913429|-/C|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	662.321628	661.314351	0.82642	0.00054736	0.65711	0.00043522	1.4835	0.00098258	662.3219114187634	35.092	1.5005	35.092	34.597	36.098	0	-0.037162	0.00019925	NaN	5.7604	54	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1383400000	+		34770	17605	22067	22187							-0.029853320988877385
TTGLNSFDEYR	11	Unmodified	_TTGLNSFDEYR_					0	0	0			REV__ENSG00000140740|ENST00000268379|UQCRC2	REV__ENSG00000140740|ENST00000268379|UQCRC2	MULTI-MSMS	HCT116MG_D190212_S3	3	651.8016967773438	2	651.801674	1301.58879	0.49243	0.00032096	-0.2209	-0.00014398	0.27153	0.00017698	651.8015471250907	40.19	0.56851	39.889	39.595	40.163	-0.30137					28	13	3	0	0	0	0.73696	1	14838	14838		8.1555	8.1555	1	14060000	+		34771	12308	22068	22188	33490	33490					-0.04993603921116119
TTGVATVVESE	11	Unmodified	_TTGVATVVESE_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.259521484375	2	546.774593	1091.53463	0.58539	0.00032007	0.64221	0.00035114	1.2276	0.00067122	546.7749654922718	26.308	0.46676	25.946	25.557	26.024	-0.36164					11	8	2	0	0	0	0.33676	1	9517	9517		29.082	2.1979	1	10079000	+		34772	13941	22069	22189	33491	33491					-0.00747196072643419
TTIALIQLLR	10	Unmodified	_TTIALIQLLR_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MSMS	HCT116MG_D190212_S4	4	381.2483825683594	3	381.248291	1140.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.937	1	48.572	48.072	49.072	-0.365								0	0	0	0.96804	1	18135	18135		0.69767	0	1		+		34773	11200	22070	22190	33492	33492					0.15831126362263603
TTIFCMPSCC	10	Unmodified	_TTIFCMPSCC_					0	0	0		ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	MSMS	HCT116MG_D190212_S2	2	553.1788940429688	2	553.212891	1104.41123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.60868	1	0.60474	0.10474	1.1047	-0.0039395								0	0	0	0.96937	1	200	200		0.40072	0	1				34774	8028	22071	22191	33493	33493					-0.1367993331227808
TTIKVIIVIY	10	Unmodified	_TTIKVIIVIY_					0	0	0		ENSG00000116857|ENST00000367330|TMEM9	ENSG00000116857|ENST00000367330|TMEM9	ENSG00000116857|ENST00000367330|TMEM9	MSMS	HCT116MG_D190212_S3	3	388.2539367675781	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.006	1	56.727	56.227	57.227	-0.27913								0	0	0	0.97054	1	21654	21654		0.13989	0.04505	1				34775	2545	22072	22192	33494	33494					0.1628977879058766
TTIYMRFDEHY	11	Unmodified	_TTIYMRFDEHY_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MSMS	HCT116MG_D190212_S3	3	738.3350830078125	2	738.334827	1474.6551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.202	1	27.033	26.533	27.533	-0.16933								0	0	0	0.95636	1	9793	9793		2.9952	1.5133	1		+		34776	11519	22073	22193	33495	33495					-0.0632411135068196
TTKKNTLVKS	10	Unmodified	_TTKKNTLVKS_					0	0	0			REV__nc|ENSG00000148834|P78417-2|GSTO1	REV__nc|ENSG00000148834|P78417-2|GSTO1	MULTI-MSMS	HCT116MG_D190212_S2	2	560.3406982421875	2	560.340238	1118.66592	0.40062	0.00022448	-0.057439	-3.2185E-05	0.34318	0.0001923	560.3401062833644	54.705	0.5624	54.515	54.201	54.764	-0.1894					26	10	3	0	0	0	0.87343	1	21027	21027		5.2969	5.2969	1	46232000	+		34777	17158	22074	22194	33496	33496					0.11133659085908221
TTKVALVQ	8	Unmodified	_TTKVALVQ_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-2|EMSY	REV__nc|ENSG00000158636|Q7Z589-2|EMSY	MSMS	HCT116MG_D190212_S3	3	430.2645568847656	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.342	1	41.04	40.54	41.54	-0.30185								0	0	0	0.8837	1	15376	15376		4.3292	0	1		+		34778	12788	22075	22195	33497	33497					0.08254972902841473
TTLGPRPPWRA	11	Unmodified	_TTLGPRPPWRA_					0	0	0			REV__CITED2|p.P84Rfs*63|1|0.39|ENSG00000164442|chr6:139373694-139373694|G/-|frameshift_variant	REV__CITED2|p.P84Rfs*63|1|0.39|ENSG00000164442|chr6:139373694-139373694|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	626.3507080078125	2	626.351471	1250.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.868	1	28.868	28.368	29.368	0								0	0	0	0.94012	1	10530	10530		11.495	2.7493	1		+		34779	10195	22076	22196	33498	33498					0.07307303274183141
TTLNYEYDRK	10	Unmodified	_TTLNYEYDRK_					0	0	0		ENST00000484559.1_1_2:160728960-160761235:-|nuORF;LY75|p.W1325Ffs*24|1|0.14|ENSG00000054219|chr2:159819905-159819906|-/TTTAAAGTTATTGA|frameshift_variant;LY75|p.K1412Rfs*2|4|0.39|ENSG00000054219|chr2:159816951-159816951|T/-|frameshift_variant;LY75|p.Q1410Tfs*6|1|0.07|ENSG00000054219|chr2:159816959-159816960|-/GGGTT|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75	ENST00000484559.1_1_2:160728960-160761235:-|nuORF	ENST00000484559.1_1_2:160728960-160761235:-|nuORF	MSMS	HCT116MG_D190212_S3	3	434.8822937011719	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1936	1	9.2197	8.7197	9.7197	0.026101								0	0	0	0.96453	1	2774	2774		0.62683	0	1				34780	1069	22077	22197	33499	33499					-0.01356727024403881
TTLSKSKSRV	10	Unmodified	_TTLSKSKSRV_					0	0	0			REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|24|2|sense	REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|24|2|sense	MULTI-MSMS	HCT116MG_D190212_S2	2	553.9617309570312	2	553.830037	1105.64552	0.42041	0.00023284	-0.11886	-6.583E-05	0.30155	0.00016701	553.8298954660145	48.488	2.6983	48.344	47.521	50.219	-0.1437					108	52	3	0	0	0	0.86339	1	18902	18902		6.7232	6.7232	1	110770000	+		34781	16948	22078	22198	33500	33500					0.09692488426094314
TTLSKSKSRV	10	Unmodified	_TTLSKSKSRV_					0	0	0			REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|24|2|sense	REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|24|2|sense	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	553.830037	1105.64552	0.42041	0.00023284	-0.11886	-6.583E-05	0.30155	0.00016701	553.8298954660145	48.488	2.6983	48.344	47.521	50.219	-0.1437	0.10938	-0.00018917	NaN	6.7232	108	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110770000	+		34782	16948	22078	22198							0.09692488426094314
TTLVLVNTI	9	Unmodified	_TTLVLVNTI_					0	0	0		SERPINB4|p.A179T|1|0.13|ENSG00000206073|chr18:63639711-63639711|C/T|missense_variant	SERPINB4|p.A179T|1|0.13|ENSG00000206073|chr18:63639711-63639711|C/T|missense_variant	SERPINB4|p.A179T|1|0.13|ENSG00000206073|chr18:63639711-63639711|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	487.7908630371094	2	487.30005	972.585547	0.46112	0.0002247	0.044923	2.1891E-05	0.50604	0.00024659	487.30002530569874	44.699	0.57522	44.614	44.428	45.004	-0.084797					27	10	4	0	0	0	0.14889	1	17094	17094		41.84	1.8899	1	660650000			34783	18145	22079	22199	33501	33501					0.09815797762848888
TTNNVVST	8	Unmodified	_TTNNVVST_					0	0	0			REV__SALL4|p.A1011T|1|0.16|ENSG00000101115|chr20:51784396-51784396|C/T|missense_variant	REV__SALL4|p.A1011T|1|0.16|ENSG00000101115|chr20:51784396-51784396|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	418.21136474609375	2	418.211432	834.408311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.141	1	19.141	18.641	19.641	0								0	0	0	0.8837	1	6621	6621		15.847	0	1		+		34784	17491	22080	22200	33502	33502					-0.015516577872858761
TTPLTKKA	8	Unmodified	_TTPLTKKA_					0	0	0		ENST00000593568.1_3_10:67331169-67331247:+|nuORF	ENST00000593568.1_3_10:67331169-67331247:+|nuORF	ENST00000593568.1_3_10:67331169-67331247:+|nuORF	MSMS	HCT116MG_D190212_S4	4	430.2646179199219	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.463	1	41.086	40.586	41.586	-0.37637								0	0	0	0.8837	1	15227	15227		2.3027	0	1				34785	9049	22081	22201	33503	33503					0.08254972902841473
TTPNAKGY	8	Unmodified	_TTPNAKGY_					0	0	0			REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	MULTI-MSMS	HCT116MG_D190212_S3	3	851.4259643554688	1	851.425758	850.418482	0.61352	0.00052237	0.20443	0.00017406	0.81795	0.00069643	851.4257780438388	32.004	0.83274	31.725	31.265	32.098	-0.27841					17	15	2	0	0	0	0.71077	1	11759	11759		21.747	1.293	1	8159900	+		34786	14413	22082	22202	33504	33504					-0.012710500620528364
TTPPFVRVT	9	Unmodified	_TTPPFVRVT_					0	0	0		MAN2A1|p.F842Lfs*16|1|0.14|ENSG00000112893|chr5:109823792-109823792|T/-|frameshift_variant;ENSG00000112893|ENST00000261483|MAN2A1	MAN2A1|p.F842Lfs*16|1|0.14|ENSG00000112893|chr5:109823792-109823792|T/-|frameshift_variant	MAN2A1|p.F842Lfs*16|1|0.14|ENSG00000112893|chr5:109823792-109823792|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	509.2900085449219	2	509.290017	1016.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.62	1	39.542	39.042	40.042	-0.077835								0	0	0	0.74436	1	14918	14918		16.942	0	1				34787	2364	22083	22203	33505	33505					0.05786046822890967
TTQAECIYYNC	11	Unmodified	_TTQAECIYYNC_					0	0	0		ENST00000530397.1_1_1:95354892-95356708:+|nuORF	ENST00000530397.1_1_1:95354892-95356708:+|nuORF	ENST00000530397.1_1_1:95354892-95356708:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	654.765869140625	2	654.765388	1307.51622	0.66767	0.00043716	-0.71103	-0.00046556	-0.043365	-2.8394E-05	654.7648042821652	23.566	0.31257	23.526	23.396	23.708	-0.03968					13	5	3	0	0	0	0.72373	1	8328	8328		13.042	2.8919	1	9322100			34788	8616	22084	22204	33506	33506					-0.12523397310519613
TTQAECIYYNC	11	Unmodified	_TTQAECIYYNC_					0	0	0		ENST00000530397.1_1_1:95354892-95356708:+|nuORF	ENST00000530397.1_1_1:95354892-95356708:+|nuORF	ENST00000530397.1_1_1:95354892-95356708:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	654.765388	1307.51622	0.65321	0.0004277	-0.43216	-0.00028296	0.22105	0.00014473	654.7651193578181	23.392	0.20882	23.392	23.314	23.523	0	-0.08229	0.00026211	NaN	13.042	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4857700			34789	8616	22084	22204							-0.12523397310519613
TTQAECIYYNC	11	Unmodified	_TTQAECIYYNC_					0	0	0		ENST00000530397.1_1_1:95354892-95356708:+|nuORF	ENST00000530397.1_1_1:95354892-95356708:+|nuORF	ENST00000530397.1_1_1:95354892-95356708:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	654.765388	1307.51622	0.57318	0.0003753	-0.84714	-0.00055468	-0.27396	-0.00017938	654.7647049535608	23.753	0.25991	23.506	23.376	23.636	-0.24775	0.031036	-0.00028132	NaN	13.042	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4022200			34790	8616	22084	22204							-0.12523397310519613
TTQNTAALY	9	Unmodified	_TTQNTAALY_					0	0	0			REV__ENST00000474738.1_1_7:6624591-6628538:+|nuORF	REV__ENST00000474738.1_1_7:6624591-6628538:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	491.74560546875	2	491.745639	981.476725	0.33988	0.00016714	-0.033246	-1.6349E-05	0.30664	0.00015079	491.74559394829606	24.957	0.31133	24.582	24.452	24.764	-0.37521					8	5	2	0	0	0	0.26536	1	8997	8997		34.402	2.0962	1	14696000	+		34791	12123	22085	22205	33507	33507					-0.014754132074244808
TTQTNERLE	9	Unmodified	_TTQTNERLE_					0	0	0			REV__nc|ENSG00000165119|P61978-3|HNRNPK	REV__nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	HCT116MG_D190212_S1	1	546.283447265625	2	546.27001	1090.52547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.651	1	35.651	35.151	36.151	0								0	0	0	0.74083	1	13269	13269		17.113	4.5813	1		+		34792	13034	22086	22206	33508	33508					-0.01617544638338586
TTQVHIWG	8	Unmodified	_TTQVHIWG_					0	0	0			REV__ENST00000325147.13_1_11:204217-204385:-|nuORF	REV__ENST00000325147.13_1_11:204217-204385:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	471.24542236328125	2	471.245609	940.476666	0.26783	0.00012622	-0.072965	-3.4384E-05	0.19487	9.1831E-05	471.2454670228683	38.916	0.20697	38.831	38.754	38.961	-0.084618					6	3	2	0	0	0	0.31873	1	14661	14661		57.471	17.514	1	17547000	+		34793	14902	22087	22207	33509	33509					0.0040463158322836534
TTRQVRTI	8	Unmodified	_TTRQVRTI_					0	0	0		ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	ENSG00000128422|ENST00000311208|KRT17	ENSG00000128422|ENST00000311208|KRT17	MULTI-MSMS	HCT116MG_D190212_S1	1	487.7909240722656	2	487.790715	973.566878	0.28651	0.00013976	0.31986	0.00015602	0.60637	0.00029578	487.79074246951876	45.122	3.1262	45.122	43.936	47.062	0					135	59	4	0	0	0	0.8506	1	16938	16938		5.2307	5.2307	1	110330000		+	34794	567	22088	22208	33510	33510					0.07903680911670108
TTRSSGGG	8	Unmodified	_TTRSSGGG_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MSMS	HCT116MG_D190212_S1	1	722.3436279296875	1	722.342757	721.335481	0.87044	0.00062876	0.24426	0.00017644	1.1147	0.00080519	722.3426072545602	34.83	0.3638	34.83	34.649	35.013	0					9	6	2	0	0	0	0.88026	1	12975	12975		0	0	1	7019400			34795	3713	22089	22209	33511	33511					-0.03633366790029413
TTRTVFPPP	9	Unmodified	_TTRTVFPPP_					0	0	0		ENST00000581396.5_1_17:17750516-17750942:-|nuORF	ENST00000581396.5_1_17:17750516-17750942:-|nuORF	ENST00000581396.5_1_17:17750516-17750942:-|nuORF	MSMS	HCT116MG_D190212_S1	1	508.28033447265625	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.196	1	20.196	19.696	20.696	0								0	0	0	0.69272	1	7046	7046		19.439	2.3261	1				34796	8957	22090	22210	33512	33512					0.043137603058426066
TTSHLMGMFY	10	Unmodified	_TTSHLMGMFY_					0	0	0		ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	HCT116MG_D190212_S1	1	594.264892578125	2	594.264827	1186.5151	0.71253	0.00042343	0.36912	0.00021936	1.0817	0.00064279	594.2648779344918	53.038	0.20504	53.038	52.897	53.102	0					6	3	2	0	0	0	0.20843	1	20323	20323		58.679	34.658	1	13131000			34797	5015	22091	22211	33513	33513					-0.07069566888753798
TTSHLMGMFY	10	Unmodified	_TTSHLMGMFY_					0	0	0		ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	ENSG00000168496|ENST00000305885|FEN1	MULTI-MSMS	HCT116MG_D190212_S2	2	594.2652587890625	2	594.264827	1186.5151	0.49768	0.00029576	-0.40124	-0.00023844	0.096448	5.7316E-05	594.2648201566931	53.29	0.41214	53.101	52.913	53.326	-0.18922					16	7	3	0	0	0	0.026842	2	20490	20443;20490		108	77.36	1	77383000			34798	5015	22091	22211	33514;33515	33515					-0.07069566888753798
TTTDQFPGLN	10	Unmodified	_TTTDQFPGLN_					0	0	0			REV__ENSG00000101542|ENST00000262717|CDH20	REV__ENSG00000101542|ENST00000262717|CDH20	MULTI-MSMS	HCT116MG_D190212_S3	3	547.2623901367188	2	547.261653	1092.50875	0.42428	0.00023219	0.83588	0.00045745	1.2602	0.00068964	547.2619440375001	21.675	0.15877	21.694	21.588	21.747	0.018446					4	2	2	0	0	0	0.45751	1	7582	7582		38.176	3.7738	1	3403700	+		34799	11127	22092	22212	33516	33516					-0.03380045524272646
TTTIKRRAFPL	11	Unmodified	_TTTIKRRAFPL_					0	0	0		ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENST00000525082.1_1_11:118639020-118656960:-|nuORF	MSMS	HCT116MG_D190212_S3	3	652.3953247070312	2	652.395879	1302.7772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.693	1	55.405	54.905	55.905	-0.28773								0	0	0	0.84073	1	21127	21127		27.629	1.3607	1				34800	8579	22093	22213	33517	33517					0.1379271851383237
TTTIKRRAFPL	11	Unmodified	_TTTIKRRAFPL_					0	0	0		ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENST00000525082.1_1_11:118639020-118656960:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	652.3956298828125	2	652.395879	1302.7772	0.68917	0.00044961	-0.75222	-0.00049075	-0.063054	-4.1136E-05	652.3952244340371	55.636	0.15629	55.324	55.246	55.402	-0.312					6	2	3	0	0	0	0.72792	1	20864	20864		11.495	3.8858	1	5778300			34801	8579	22093	22213	33518	33518					0.1379271851383237
TTTKRKKLR	9	Unmodified	_TTTKRKKLR_					0	0	0			REV__ENSG00000110975|ENST00000228567|SYT10	REV__ENSG00000110975|ENST00000228567|SYT10	MSMS	HCT116MG_D190212_S4	4	377.91510009765625	3	377.915535	1130.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.08	1	0.81545	0.31545	1.3155	-0.26456								0	0	0	0.77025	1	330	330		0	0	1		+		34802	11417	22094	22214	33519	33519					0.16464180170873988
TTTTTTTTFTT	11	Unmodified	_TTTTTTTTFTT_					0	0	0			REV__nc|ENSG00000198788|Q02817|MUC2	REV__nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	HCT116MG_D190212_S4	4	589.2864379882812	2	588.785158	1175.55576	0.54803	0.00032267	1.4587	0.00085885	2.0067	0.0011815	588.7862801028814	30.733	0.4005	30.368	30.268	30.668	-0.36416					16	9	2	0	0	0	0.72755	1	11120	11120		19.362	7.1213	1	3358800	+		34803	17263	22095	22215	33520	33520					-0.024992307638058264
TTVALKMAP	9	Unmodified	_TTVALKMAP_					0	0	0		ENST00000537045.5_1_22:19025468-19025981:-|nuORF	ENST00000537045.5_1_22:19025468-19025981:-|nuORF	ENST00000537045.5_1_22:19025468-19025981:-|nuORF	MSMS	HCT116MG_D190212_S4	4	466.26580810546875	2	466.267696	930.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.237	1	31.861	31.361	32.361	-0.37529								0	0	0	0.768	1	11733	11733		7.9102	1.187	1				34804	8671	22096	22216	33521	33521					0.05279899685194778
TTVKGVIK	8	Unmodified	_TTVKGVIK_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MSMS	HCT116MG_D190212_S4	4	423.27508544921875	2	423.276378	844.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.104	1	55.798	55.298	56.298	-0.30626								0	0	0	0.8837	1	21024	21024		0.69038	0	1				34805	2109	22097	22217	33522	33522					0.10971563282510033
TTVLKPGN	8	Unmodified	_TTVLKPGN_					0	0	0		ENSG00000120690|ENST00000239882|ELF1;nc|ENSG00000120690|P32519-2|ELF1;ELF1|p.S350F|1|0.29|ENSG00000120690|chr13:40941128-40941128|G/A|missense_variant	ENSG00000120690|ENST00000239882|ELF1	ENSG00000120690|ENST00000239882|ELF1	MULTI-MSMS	HCT116MG_D190212_S1	1	415.2414245605469	2	415.242535	828.470518	-0.090273	-3.7485E-05	-2.2802	-0.00094685	-2.3705	-0.00098433	415.24170807100876	49.157	0.46666	49.157	48.819	49.286	0					11	8	2	0	0	0	0.85329	1	18737	18737		4.756	0.42677	1	23209000			34806	2707	22098	22218	33523	33523					0.04942113351705757
TTWFIDFMCWL	11	Unmodified	_TTWFIDFMCWL_					0	0	0		ENSG00000145284|ENST00000319540|SCD5	ENSG00000145284|ENST00000319540|SCD5	ENSG00000145284|ENST00000319540|SCD5	MSMS	HCT116MG_D190212_S1	1	731.831298828125	2	731.830334	1461.64612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.386	1	36.386	35.886	36.886	0								0	0	0	0.95581	1	13563	13563		3.2813	0.28607	1				34807	3904	22099	22219	33524	33524					-0.06624176240711677
TTYEERNITGT	11	Unmodified	_TTYEERNITGT_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MSMS	HCT116MG_D190212_S1	1	428.8736877441406	3	428.87373	1283.59936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.636	1	11.636	11.136	12.136	0								0	0	0	0.96208	1	3680	3680		0	0	1				34808	1998	22100	22220	33525	33525					-0.031096212666852807
TVAAPGVP	8	Unmodified	_TVAAPGVP_					0	0	0			REV__ENST00000204005.13_1_19:41114149-41118026:+|nuORF	REV__ENST00000204005.13_1_19:41114149-41118026:+|nuORF	MSMS	HCT116MG_D190212_S4	4	356.2065124511719	2	356.205421	710.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.846	1	58.563	58.063	59.063	-0.28305								0	0	0	0.8837	1	22129	22129		2.5775	0	1		+		34809	14498	22101	22221	33526	33526					0.029507702601904384
TVADHIQKV	9	Unmodified	_TVADHIQKV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S1	1	505.7850341796875	2	505.785099	1009.55564	0.53027	0.00026821	0.050451	2.5517E-05	0.58073	0.00029372	505.7849203688899	24.542	0.26119	24.542	24.412	24.673	0					10	4	3	0	0	0	0.0035183	1	8793	8793		157.8	89.714	1	25443000			34810	5641	22102	22222	33527	33527					0.051248588175326404
TVADHIQKV	9	Unmodified	_TVADHIQKV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	HCT116MG_D190212_S2	2	505.7851257324219	2	505.785099	1009.55564	0.50757	0.00025672	-0.26673	-0.00013491	0.24085	0.00012182	505.7849672048696	25.011	0.36407	24.635	24.504	24.868	-0.37521					15	6	4	0	0	0	0.0034469	1	8992	8992		179.17	104.24	1	89169000			34811	5641	22102	22222	33528	33528					0.051248588175326404
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	HCT116MG_D190212_S1	1	485.2720031738281	2	485.271824	968.529095	0.34562	0.00016772	0.041483	2.0131E-05	0.3871	0.00018785	485.2717854795231	25.953	0.36565	25.953	25.77	26.136	0					17	6	4	0	0	0	0.0035894	1	9346	9346		176.43	101.5	1	77215000			34812	6682	22103	22223	33529	33529					0.043571699261860886
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	HCT116MG_D190212_S2	2	485.2718811035156	2	485.271824	968.529095	0.25288	0.00012271	0.35432	0.00017194	0.6072	0.00029466	485.2719246721938	26.308	0.41412	25.946	25.766	26.18	-0.36164					16	7	4	0	0	0	0.0039465	1	9513	9513		151.48	69.867	1	277050000			34813	6682	22103	22223	33530	33530					0.043571699261860886
TVAEIPVFLY	10	Unmodified	_TVAEIPVFLY_					0	0	0		ENST00000474534.1_1_9:131798902-131809484:+|nuORF;nc|ENSG00000148343|Q7L4E1-2|MIGA2;nc|ENSG00000148343|Q7L4E1-3|MIGA2;ENSG00000148343|ENST00000684074|MIGA2;ENST00000477088.5_1_9:131802810-131804503:+|nuORF	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	MSMS	HCT116MG_D190212_S3	3	576.3225708007812	2	576.320983	1150.62741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.043	1	33.749	33.249	34.249	-0.29419								0	0	0	0.92607	1	12516	12516		10.074	1.3285	1				34814	8188	22104	22224	33531	33531					0.058123534513924824
TVAFNDNRDP	10	Unmodified	_TVAFNDNRDP_					0	0	0		ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-4|TAS1R1;nc|ENSG00000173662|Q7RTX1-2|TAS1R1	ENSG00000173662|ENST00000333172|TAS1R1	ENSG00000173662|ENST00000333172|TAS1R1	MULTI-SECPEP	HCT116MG_D190212_S2	2	575.3399047851562	2	574.770177	1147.5258	0.33186	0.00019074	-0.07479	-4.2987E-05	0.25707	0.00014776	574.770011498487	34.119	0.46709	33.944	33.76	34.227	-0.17511					21	8	4	0	0	0	0.30788	1	12656	12656		13.042	4.2971	1	118530000			34815	5298	22105	22225	33532	33532					-0.04206124918482601
TVAKLGPL	8	Unmodified	_TVAKLGPL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MSMS	HCT116MG_D190212_S4	4	399.75634765625	2	399.757821	797.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.81	1	52.47	51.97	52.97	-0.34023								0	0	0	0.8837	1	19698	19698		2.8892	0	1				34816	1314	22106	22226	33533	33533					0.09423891736753376
TVALHGKLEYY	11	Unmodified	_TVALHGKLEYY_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MSMS	HCT116MG_D190212_S3	3	647.343994140625	2	647.34552	1292.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.001	1	41.698	41.198	42.198	-0.30257								0	0	0	0.94012	1	15633	15633		11.495	2.7493	1				34817	6087	22107	22227	33534	33534					0.04185641740355095
TVALTKEPI	9	Unmodified	_TVALTKEPI_					0	0	0		tr|U7STF9|U7STF9_FUSNUDJ-1/PfpIdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01043PE=4SV=1	tr|U7STF9|U7STF9_FUSNUDJ-1/PfpIdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01043PE=4SV=1	tr|U7STF9|U7STF9_FUSNUDJ-1/PfpIdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01043PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	486.2437744140625	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.307	1	26.307	25.807	26.807	0								0	0	0	0.69648	1	9500	9500		19.257	0	1				34818	18439	22108	22228	33535	33535					0.08343511245811897
TVAMLMIGV	9	Unmodified	_TVAMLMIGV_					0	0	0		LRRC8E|p.P454Rfs*33|1|0.35|ENSG00000171017|chr19:7899878-7899878|C/-|frameshift_variant;ENSG00000171017|ENST00000306708|LRRC8E	LRRC8E|p.P454Rfs*33|1|0.35|ENSG00000171017|chr19:7899878-7899878|C/-|frameshift_variant	LRRC8E|p.P454Rfs*33|1|0.35|ENSG00000171017|chr19:7899878-7899878|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	467.759765625	2	467.758649	933.502746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.721	1	41.345	40.845	41.845	-0.37637								0	0	0	0.64498	1	15309	15309		21.747	4.8044	1				34819	5172	22109	22229	33536	33536					0.033334414388491496
TVAPHSHQFEY	11	Unmodified	_TVAPHSHQFEY_					0	0	0			REV__ENSG00000008197|ENST00000008391|TFAP2D	REV__ENSG00000008197|ENST00000008391|TFAP2D	MSMS	HCT116MG_D190212_S3	3	658.3077392578125	2	658.306926	1314.5993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.665	1	43.358	42.858	43.858	-0.30616								0	0	0	0.93552	1	16300	16300		13.906	2.2658	1		+		34820	10500	22110	22230	33537	33537					-0.04541576475980946
TVAVADALL	9	Unmodified	_TVAVADALL_					0	0	0			REV__ENSG00000144381|ENST00000388968|HSPD1	REV__ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S2	2	872.5092163085938	1	872.50876	871.501483	0.7161	0.0006248	0.079818	6.9642E-05	0.79592	0.00069444	872.5086993226922	53.165	0.26027	52.976	52.809	53.07	-0.18922					7	4	2	0	0	0	0.031005	1	20451	20451		85.357	14.641	1	16286000	+		34821	12419	22111	22231	33538	33538					0.060592666659431416
TVAVFMLKI	9	Unmodified	_TVAVFMLKI_					0	0	0		ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	MULTI-SECPEP	HCT116MG_D190212_S1	1	511.2889709472656	2	511.309364	1020.60417	0.42144	0.00021548	-0.41079	-0.00021004	0.010646	5.4434E-06	511.3090608274562	47.101	0.99997	47.101	46.543	47.543	0					22	19	2	0	0	0	0.26422	1	17836	17836		3.9444	0	1	7264600			34822	5998	22112	22232	33539	33539					0.09469636133053427
TVAVRYHSLT	10	Unmodified	_TVAVRYHSLT_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	HCT116MG_D190212_S4	4	573.8174438476562	2	573.81693	1145.61931	0.43604	0.00025021	0.085392	4.9E-05	0.52143	0.00029921	573.8168886552867	31.302	0.46514	30.931	30.662	31.127	-0.37026					13	8	2	0	0	0	0.82965	1	11371	11371		6.7232	0	1	2049600	+		34823	10335	22113	22233	33540	33540					0.052322192545943835
TVDARVYSY	9	Unmodified	_TVDARVYSY_					0	0	0		ENSG00000165609|ENST00000491614|NUDT5;ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENSG00000165609|ENST00000491614|NUDT5	ENSG00000165609|ENST00000491614|NUDT5	MULTI-MSMS	HCT116MG_D190212_S1	1	537.2664794921875	2	537.266739	1072.51892	0.25917	0.00013924	0.070239	3.7737E-05	0.32941	0.00017698	537.2666586364788	32.144	0.2602	32.144	32.014	32.274	0					10	4	3	0	0	0	0.048237	1	11853	11853		75.571	20.068	1	25160000			34824	4783	22114	22234	33541	33541					-0.014434377990482972
TVDARVYSY	9	Unmodified	_TVDARVYSY_					0	0	0		ENSG00000165609|ENST00000491614|NUDT5;ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENSG00000165609|ENST00000491614|NUDT5	ENSG00000165609|ENST00000491614|NUDT5	MULTI-MSMS	HCT116MG_D190212_S2	2	537.26708984375	2	537.266739	1072.51892	0.35745	0.00019205	0.35052	0.00018832	0.70797	0.00038037	537.2667687067712	32.387	0.31189	32.157	31.995	32.306	-0.23009					11	5	3	0	0	0	0.095731	1	11995	11995		59.052	15.28	1	27931000			34825	4783	22114	22234	33542	33542					-0.014434377990482972
TVDDPYATF	9	Unmodified	_TVDDPYATF_					0	0	0		ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1028.457763671875	1	1028.45712	1027.44984	0.51734	0.00053206	1.005	0.0010336	1.5224	0.0015657	1028.4571464061953	46.427	0.36029	46.316	46.162	46.522	-0.11122					10	6	2	0	0	0	0.0063744	1	17705	17705		125.62	74.77	1	17568000			34826	5260	22115	22235	33543	33543					-0.06278521818626359
TVDDPYATF	9	Unmodified	_TVDDPYATF_					0	0	0		ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1028.457275390625	1	1028.45712	1027.44984	0.74469	0.00076588	-0.72846	-0.00074919	0.016227	1.6688E-05	1028.4564926168484	46.673	0.31274	46.359	46.177	46.49	-0.31405					7	5	2	0	0	0	0.0063744	1	17515	17515		125.62	74.77	1	4332000			34827	5260	22115	22235	33544	33544					-0.06278521818626359
TVDDPYATFV	10	Unmodified	_TVDDPYATFV_					0	0	0		ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1127.5269775390625	1	1127.52553	1126.51826	0.81076	0.00091415	0.18979	0.00021399	1.0005	0.0011281	1127.5255333462148	52.096	0.41364	51.913	51.732	52.145	-0.18369					16	7	3	0	0	0	0.02258	1	19994	19994		115.69	63.424	1	57229000			34828	5260	22116	22236	33545	33545					-0.039942772387803416
TVDDPYATFV	10	Unmodified	_TVDDPYATFV_					0	0	0		ENST00000530945.1_1_11:65623404-65625570:-|nuORF;ENSG00000172757|ENST00000308162|CFL1	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENST00000530945.1_1_11:65623404-65625570:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1127.5252685546875	1	1127.52553	1126.51826	0.42488	0.00047906	0.034876	3.9323E-05	0.45976	0.00051839	1127.5255326366955	52.313	0.35884	52.003	51.781	52.14	-0.30927					13	6	3	0	0	0	0.02258	1	19780	19780		115.69	79.565	1	10358000			34829	5260	22116	22236	33546	33546					-0.039942772387803416
TVDEHVWFY	9	Unmodified	_TVDEHVWFY_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	598.27490234375	2	598.274564	1194.53457	0.65192	0.00039003	0.23878	0.00014285	0.8907	0.00053288	598.2745789335228	53.481	0.206	53.481	53.359	53.565	0					8	3	3	0	0	0	0.63131	1	20513	20513		9.3831	2.66	1	17071000			34830	5	22117	22237	33547	33547					-0.054911512819899144
TVDEHVWFY	9	Unmodified	_TVDEHVWFY_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	598.2747802734375	2	598.274564	1194.53457	0.56955	0.00034075	0.11794	7.0561E-05	0.68749	0.00041131	598.2744907208698	53.799	0.46443	53.61	53.377	53.842	-0.1894					21	8	3	0	0	0	0.007119	1	20679	20679		120.45	86.348	1	143160000			34831	5	22117	22237	33548	33548					-0.054911512819899144
TVDEHVWFY	9	Unmodified	_TVDEHVWFY_					0	0	0		ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	598.2745971679688	2	598.274564	1194.53457	0.59306	0.00035482	0.15499	9.2724E-05	0.74805	0.00044754	598.2744560032711	53.894	0.36444	53.595	53.404	53.769	-0.29946					13	6	3	0	0	0	0.012168	1	20412	20412		108	78.156	1	11154000			34832	5	22117	22237	33549	33549					-0.054911512819899144
TVDGGNSG	8	Unmodified	_TVDGGNSG_					0	0	0		ENST00000355857.7_1_2:120129947-120129989:+|nuORF	ENST00000355857.7_1_2:120129947-120129989:+|nuORF	ENST00000355857.7_1_2:120129947-120129989:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	353.1980285644531	2	353.65375	705.292947	-0.18801	-6.6491E-05	0.61576	0.00021776	0.42774	0.00015127	353.6538553836573	32.291	0.20781	32.061	31.942	32.15	-0.23009					5	3	2	0	0	0	0.33409	1	11915	11915		2.5775	0	1	4678500			34833	7295	22118	22238	33550	33550					-0.0714876191826761
TVDGVVFHY	9	Unmodified	_TVDGVVFHY_					0	0	0		VCAN|p.V398Wfs*22|1|0.12|ENSG00000038427|chr5:83519495-83519495|C/-|frameshift_variant;nc|ENSG00000038427|P13611-4|VCAN;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.E2431Rfs*10|1|0.16|ENSG00000038427|chr5:83540290-83540291|-/G|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN	VCAN|p.V398Wfs*22|1|0.12|ENSG00000038427|chr5:83519495-83519495|C/-|frameshift_variant	VCAN|p.V398Wfs*22|1|0.12|ENSG00000038427|chr5:83519495-83519495|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2604370117188	2	518.758549	1035.50255	0.54911	0.00028486	1.1757	0.0006099	1.7248	0.00089476	519.260538583954	44.658	0.31413	44.574	44.428	44.743	-0.084797					14	5	4	0	0	0	0.1569	1	16985	16985		46.921	5.0812	1	28340000			34834	995	22119	22239	33551	33551					-0.013785189651343899
TVDKHSDEY	9	Unmodified	_TVDKHSDEY_					0	0	0		nc|ENSG00000172216|P17676-3|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-3|CEBPB	nc|ENSG00000172216|P17676-3|CEBPB	MULTI-MSMS	HCT116MG_D190212_S1	1	547.243408203125	2	547.24346	1092.47237	0.55352	0.00030291	-0.060002	-3.2836E-05	0.49352	0.00027008	547.2433407688017	16.759	0.31252	16.759	16.629	16.942	0					11	5	3	0	0	0	0.0056195	1	5669	5669		143.91	94.355	1	36872000			34835	5241	22120	22240	33552	33552					-0.07016922420984884
TVDKHSDEY	9	Unmodified	_TVDKHSDEY_					0	0	0		nc|ENSG00000172216|P17676-3|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-3|CEBPB	nc|ENSG00000172216|P17676-3|CEBPB	MULTI-MSMS	HCT116MG_D190212_S2	2	547.243408203125	2	547.24346	1092.47237	0.46458	0.00025424	-0.0073668	-4.0314E-06	0.45721	0.00025021	547.2434325904488	17.248	0.3656	16.899	16.769	17.135	-0.34933					18	6	4	0	0	0	0.006003	1	5860	5860		151.48	95.977	1	67256000			34836	5241	22120	22240	33553	33553					-0.07016922420984884
TVDKHSDEY	9	Unmodified	_TVDKHSDEY_					0	0	0		nc|ENSG00000172216|P17676-3|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-3|CEBPB	nc|ENSG00000172216|P17676-3|CEBPB	MULTI-MSMS	HCT116MG_D190212_S2	2	365.1645202636719	3	365.164732	1092.47237	-0.18681	-6.8218E-05	-0.4284	-0.00015644	-0.61521	-0.00022465	365.1645406689215	17.261	0.26145	16.912	16.821	17.082	-0.34933					6	4	2	0	0	0	0.71058	1	5897	5897		4.5289	0	1	3528800			34837	5241	22120	22240	33554	33554					-0.07016922420984884
TVDKHYRDF	9	Unmodified	_TVDKHYRDF_					0	0	0		nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;ENST00000494648.1_1_3:124174014-124181481:+|nuORF;ENST00000393501.5_1_3:124103736-124207203:+|nuORF	nc|ENSG00000160145|O60229-2|KALRN	nc|ENSG00000160145|O60229-2|KALRN	MSMS	HCT116MG_D190212_S3	3	394.1971740722656	3	394.196367	1179.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.295	1	40.993	40.493	41.493	-0.30185								0	0	0	0.76793	1	15357	15357		8.1555	0	1				34838	4433	22121	22241	33555	33555					-0.015329441591575232
TVDLMVEHT	9	Unmodified	_TVDLMVEHT_					0	0	0		ENSG00000197165|ENST00000335715|SULT1A2	ENSG00000197165|ENST00000335715|SULT1A2	ENSG00000197165|ENST00000335715|SULT1A2	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.2737426757812	2	522.755149	1043.49575	0.37369	0.00019535	1.3035	0.00068141	1.6772	0.00087676	522.7558674413415	50.808	0.25797	50.637	50.558	50.816	-0.1719					5	4	2	0	0	0	0.18783	1	19518	19518		28.487	9.0478	1	10610000			34839	6125	22122	22242	33556	33556					-0.02426199908018134
TVDNVQPLLY	10	Unmodified	_TVDNVQPLLY_					0	0	0		ENSG00000145332|ENST00000273963|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	MULTI-MSMS	HCT116MG_D190212_S2	2	581.3107299804688	2	581.311146	1160.60774	0.4373	0.00025421	-0.4948	-0.00028764	-0.057507	-3.3429E-05	581.3105386370243	50.285	0.20642	50.113	49.985	50.191	-0.1719					5	3	2	0	0	0	0.027291	1	19298	19298		107.19	44.614	1	16304000			34840	3906	22123	22243	33557	33557					0.03385977440620991
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1180.55419921875	1	1180.55208	1179.5448	0.64935	0.0007666	-0.22999	-0.00027152	0.41936	0.00049508	1180.5517066308496	56.093	0.20628	56.093	55.964	56.171	0					6	3	2	0	0	0	0.042873	1	21573	21573		92.491	56.364	1	50982000			34841	1321	22124	22244	33558	33558					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1180.552734375	1	1180.55208	1179.5448	0.59513	0.00070259	0.079456	9.3802E-05	0.67459	0.00079639	1180.5519392563863	56.261	0.25808	56.078	55.949	56.207	-0.18261					16	4	5	0	0	0	0.020806	1	21707	21707		118.89	77.055	1	309520000			34842	1321	22124	22244	33559	33559					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	590.7802734375	2	590.779679	1179.5448	0.70316	0.00041541	-0.072351	-4.2743E-05	0.63081	0.00037267	590.7795839104544	56.261	0.30999	56.078	55.949	56.259	-0.18261					12	5	4	0	0	0	0.033024	1	21715	21715		99.799	57.959	1	83352000			34843	1321	22124	22244	33560	33560					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1180.552734375	1	1180.55208	1179.5448	0.64764	0.00076458	0.3238	0.00038226	0.97144	0.0011468	1180.5521890978746	56.407	0.26198	56.124	55.94	56.202	-0.28367					8	4	3	0	0	0	0.033024	1	21415	21415		99.799	57.959	1	7538600			34844	1321	22124	22244	33561	33561					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	590.7800903320312	2	590.779679	1179.5448	0.68338	0.00040373	0.39543	0.00023361	1.0788	0.00063734	590.7798107591295	56.399	0.20971	56.115	55.993	56.202	-0.28367					8	3	3	0	0	0	0.82332	1	21430	21430		10.074	3.3508	1	2959900			34845	1321	22124	22244	33562	33562					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENST00000473330.1_1_7:5642709-5645102:+|nuORF;ENSG00000075618|ENST00000382361|FSCN1	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENST00000473330.1_1_7:5642709-5645102:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	590.779679	1179.5448	0.64353	0.00038019	0.33886	0.00020019	0.98239	0.00058038	590.7800385136015	56.093	0.15519	56.093	56.015	56.171	0	-0.002376	0.00037198	NaN	99.799	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20075000			34846	1321	22124	22244							-0.03778588347427103
TVDRSLSIP	9	Unmodified	_TVDRSLSIP_					0	0	0		ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENST00000480199.1_1_8:28157565-28157883:+|nuORF	ENST00000480199.1_1_8:28157565-28157883:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2769775390625	2	494.277106	986.53966	0.10126	5.0049E-05	0.25781	0.00012743	0.35907	0.00017748	494.27715637474756	37.896	0.82114	37.803	37.345	38.167	-0.09301					34	15	3	0	0	0	0.15273	1	14157	14157		47.749	5.9091	1	46939000			34847	8236	22125	22245	33563	33563					0.045851525806369864
TVDSNRILK	9	Unmodified	_TVDSNRILK_					0	0	0			REV__tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	REV__tr|U7T681|U7T681_FUSNUHTHgntR-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00143PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	523.3037719726562	2	523.303655	1044.59276	0.61928	0.00032407	-0.19256	-0.00010077	0.42672	0.00022331	523.3034198149621	47.329	1.5901	47.207	46.769	48.36	-0.12175					66	30	3	0	0	0	0.53593	1	18094	18094		14.838	4.0143	1	63378000	+		34848	17995	22126	22246	33564	33564					0.07224530363282611
TVDVLKEAY	9	Unmodified	_TVDVLKEAY_					0	0	0		nc|ENSG00000170085|Q8NDZ2-3|SIMC1;nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1	nc|ENSG00000170085|Q8NDZ2-3|SIMC1	nc|ENSG00000170085|Q8NDZ2-3|SIMC1	MULTI-MSMS	HCT116MG_D190212_S1	1	519.279541015625	2	519.279315	1036.54408	0.20325	0.00010554	-0.043042	-2.2351E-05	0.1602	8.3191E-05	519.2795411946353	39.825	0.20748	39.825	39.657	39.865	0					6	3	2	0	0	0	0.22528	1	14962	14962		38.615	2.4877	1	4853200			34849	5114	22127	22247	33565	33565					0.027266170035318282
TVDVLKEAY	9	Unmodified	_TVDVLKEAY_					0	0	0		nc|ENSG00000170085|Q8NDZ2-3|SIMC1;nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1	nc|ENSG00000170085|Q8NDZ2-3|SIMC1	nc|ENSG00000170085|Q8NDZ2-3|SIMC1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	519.279315	1036.54408	0.054188	2.8139E-05	-0.0018026	-9.3605E-07	0.052386	2.7203E-05	519.2792369644486	39.837	0.20634	39.764	39.636	39.842	-0.072838	-0.030365	1.3102E-05	NaN	38.615	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11798000			34850	5114	22127	22247							0.027266170035318282
TVDWNEWRDY	10	Unmodified	_TVDWNEWRDY_					0	0	0		SLC25A24|p.K190Nfs*29|1|0.24|ENSG00000085491|chr1:108157561-108157561|T/-|frameshift_variant;nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24	SLC25A24|p.K190Nfs*29|1|0.24|ENSG00000085491|chr1:108157561-108157561|T/-|frameshift_variant	SLC25A24|p.K190Nfs*29|1|0.24|ENSG00000085491|chr1:108157561-108157561|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	692.4068603515625	2	692.301841	1382.58913	0.47111	0.00032615	-0.89607	-0.00062035	-0.42496	-0.0002942	692.3011814095576	53.119	0.26009	52.93	52.758	53.018	-0.18922					10	4	3	0	0	0	0.30856	1	20391	20391		10.824	5.0921	1	38291000			34851	1455	22128	22248	33566	33566					-0.08686184201224023
TVEAICLLAS	10	Carbamidomethyl (C)	_TVEAIC(Carbamidomethyl (C))LLAS_	TVEAIC(1)LLAS		TVEAIC(59)LLAS		0	1	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	HCT116MG_D190212_S2	2	538.808837890625	2	538.78645	1075.55835	0.51411	0.000277	-1.0947	-0.00058981	-0.58059	-0.00031281	538.7862142162332	55.587	0.30921	55.402	55.174	55.483	-0.18565					12	5	4	0	0	0	0.20843	1	21447	21447		58.679	10.93	1	21595000	+		34852	11653	22129	22249	33567	33567	53				0.023589461601659423
TVEAICLLAS	10	Carbamidomethyl (C)	_TVEAIC(Carbamidomethyl (C))LLAS_					0	1	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	538.78645	1075.55835	0.52522	0.00028298	0.34267	0.00018463	0.86789	0.00046761	538.7864484513468	55.672	0.21441	55.385	55.304	55.518	-0.28773	-0.020175	0.00049149	NaN	58.679	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5400300	+		34853	11653	22129	22249			53				0.023589461601659423
TVEAICLLAS	10	Carbamidomethyl (C)	_TVEAIC(Carbamidomethyl (C))LLAS_					0	1	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	538.78645	1075.55835	0.56498	0.0003044	-0.2886	-0.00015549	0.27638	0.00014891	538.7862072199285	55.74	0.2083	55.428	55.298	55.506	-0.312	0.023319	-0.00018875	NaN	58.679	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2204700	+		34854	11653	22129	22249			53				0.023589461601659423
TVEASVSID	9	Unmodified	_TVEASVSID_					0	0	0			REV__ENST00000445427.1_1_10:6626045-6626114:+|nuORF	REV__ENST00000445427.1_1_10:6626045-6626114:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	921.4616088867188	1	920.457118	919.449842	0.92122	0.00084794	0.36228	0.00033346	1.2835	0.0011814	920.4569345410201	33.255	0.35001	32.964	32.902	33.252	-0.29013					15	11	2	0	0	0	0.24973	1	12204	12204		36.044	0	1	15761000	+		34855	15669	22130	22250	33568	33568					-0.013105218185955891
TVEGVPFFTV	10	Unmodified	_TVEGVPFFTV_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3;TYRO3|p.L355Wfs*18|1|0.21|ENSG00000092445|chr15:41568314-41568314|C/-|frameshift_variant	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MSMS	HCT116MG_D190212_S4	4	548.29296875	2	548.289682	1094.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.257	1	30.887	30.387	31.387	-0.37026								0	0	0	0.90475	1	11337	11337		14.838	1.7958	1				34856	1584	22131	22251	33569	33569					0.02131207383195033
TVEGYRVTA	9	Unmodified	_TVEGYRVTA_					0	0	0		SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant;SNX13|p.K644Rfs*3|1|0.23|ENSG00000071189|chr7:17816204-17816204|T/-|frameshift_variant;SNX13|p.F741Lfs*6|1|0.38|ENSG00000071189|chr7:17803422-17803422|A/-|frameshift_variant;SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13;SNX13|p.T598Pfs*13|1|0.23|ENSG00000071189|chr7:17821562-17821562|T/-|frameshift_variant	SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant	SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	498.2615966796875	2	498.261456	994.50836	0.35186	0.00017532	0.50084	0.00024955	0.8527	0.00042487	498.26163224000265	39.5	0.21069	39.199	39.034	39.245	-0.30137					5	3	2	0	0	0	0.23138	1	14681	14681		37.974	1.847	1	6838200			34857	1250	22132	22252	33570	33570					0.010885795465242154
TVELRRPNSPV	11	Unmodified	_TVELRRPNSPV_					0	0	0			REV__ENSG00000122756|ENST00000378980|CNTFR	REV__ENSG00000122756|ENST00000378980|CNTFR	MSMS	HCT116MG_D190212_S2	2	634.3711547851562	2	634.359493	1266.70443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.932	1	39.859	39.359	40.359	-0.072838								0	0	0	0.94538	1	15045	15045		8.7454	1.6437	1		+		34858	11743	22133	22253	33571	33571					0.08174964720410571
TVEPDTEAP	9	Unmodified	_TVEPDTEAP_					0	0	0			REV__MIEF2|p.P181Rfs*98|1|0.5|ENSG00000177427|chr17:18263934-18263934|G/-|frameshift_variant	REV__MIEF2|p.P181Rfs*98|1|0.5|ENSG00000177427|chr17:18263934-18263934|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	958.4332275390625	1	958.436383	957.429106	0.69887	0.00066982	-3.099	-0.0029702	-2.4001	-0.0023004	958.4334184771418	57.412	0.25973	57.237	57.107	57.367	-0.17494					9	4	3	0	0	0	0.43775	1	22197	22197		20.454	0	1	14847000	+		34859	13571	22134	22254	33572	33572					-0.05131112198284882
TVEPDTEAP	9	Unmodified	_TVEPDTEAP_					0	0	0			REV__MIEF2|p.P181Rfs*98|1|0.5|ENSG00000177427|chr17:18263934-18263934|G/-|frameshift_variant	REV__MIEF2|p.P181Rfs*98|1|0.5|ENSG00000177427|chr17:18263934-18263934|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	958.436383	957.429106	0.71654	0.00068676	-2.6863	-0.0025747	-1.9698	-0.0018879	958.4337123474152	57.23	0.25949	57.23	57.1	57.36	0	-0.0034621	6.7478E-05	NaN	20.454	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42278000	+		34860	13571	22134	22254							-0.05131112198284882
TVEPDTEAP	9	Unmodified	_TVEPDTEAP_					0	0	0			REV__MIEF2|p.P181Rfs*98|1|0.5|ENSG00000177427|chr17:18263934-18263934|G/-|frameshift_variant	REV__MIEF2|p.P181Rfs*98|1|0.5|ENSG00000177427|chr17:18263934-18263934|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	958.436383	957.429106	0.69887	0.00066982	-3.099	-0.0029702	-2.4001	-0.0023004	958.4334184771418	57.412	0.25973	57.237	57.107	57.367	-0.17494	0.0034621	-0.00032803	NaN	20.454	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14847000	+		34861	13571	22134	22254							-0.05131112198284882
TVERRRRRRRR	11	Unmodified	_TVERRRRRRRR_					0	0	0			REV__ENST00000321143.8_1_X:11129465-11130266:+|nuORF	REV__ENST00000321143.8_1_X:11129465-11130266:+|nuORF	MSMS	HCT116MG_D190212_S2	2	799.3336181640625	2	798.996346	1595.97814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.754	1	10.48	9.9804	10.98	-0.27365								0	0	0	0.96208	1	3422	3422		0	0	1		+		34862	14885	22135	22255	33573	33573					0.2039884539369723
TVEVGSECTL	10	Unmodified	_TVEVGSECTL_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-3|THSD1	REV__nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-SECPEP	HCT116MG_D190212_S2	2	519.2687377929688	2	519.244615	1036.47468	0.28792	0.0001495	-3.6724	-0.0019069	-3.3845	-0.0017574	519.241998674855	54.914	0.205	54.726	54.56	54.765	-0.18797					5	3	2	0	0	0	0.23995	1	21144	21144		37.974	8.8924	1	6046700	+		34863	12121	22136	22256	33574	33574					-0.042102100075453563
TVEWLRVK	8	Unmodified	_TVEWLRVK_					0	0	0			REV__ENSG00000197885|ENST00000425478|NKIRAS1	REV__ENSG00000197885|ENST00000425478|NKIRAS1	MSMS	HCT116MG_D190212_S4	4	516.0957641601562	2	515.805834	1029.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.928	1	50.573	50.073	51.073	-0.35483								0	0	0	0.8837	1	18938	18938		8.5933	3.3626	1		+		34864	14093	22137	22257	33575	33575					0.08350039576839663
TVFAKRRGKAS	11	Unmodified	_TVFAKRRGKAS_					0	0	0			REV__OR2H2|p.G237V|1|0.35|ENSG00000204657|chr6:29588654-29588654|G/T|missense_variant	REV__OR2H2|p.G237V|1|0.35|ENSG00000204657|chr6:29588654-29588654|G/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	610.1838989257812	2	610.864746	1219.71494	0.59288	0.00036217	-0.89107	-0.00054432	-0.29819	-0.00018215	610.8638246158692	54.153	0.35836	54.153	53.924	54.282	0					14	6	4	0	0	0	0.3659	1	20735	20735		0.96228	0	1	146610000	+		34865	17367	22138	22258	33576	33576					0.11386992165512311
TVFEHTFHV	9	Unmodified	_TVFEHTFHV_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MSMS	HCT116MG_D190212_S2	2	558.7780151367188	2	558.777274	1115.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.211	1	41.142	40.642	41.642	-0.068199								0	0	0	0.094981	1	15564	15564		57.471	34.735	1				34866	2057	22139	22259	33577	33577					-0.013154276995237524
TVFFERFKEY	10	Unmodified	_TVFFERFKEY_					0	0	0			REV__ENSG00000243232|ENST00000289269|PCDHAC2	REV__ENSG00000243232|ENST00000289269|PCDHAC2	MSMS	HCT116MG_D190212_S2	2	683.343505859375	2	683.34552	1364.67649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.071	1	44.978	44.478	45.478	-0.092472								0	0	0	0.92607	1	17130	17130		10.074	0.6908	1		+		34867	14361	22140	22260	33578	33578					0.008736417403270025
TVFFKTLRNHW	11	Unmodified	_TVFFKTLRNHW_					0	0	0		ENSG00000006530|ENST00000649286|AGK;ENST00000473247.5_1_7:141255266-141255365:+|nuORF;nc|ENSG00000006530|Q53H12-2|AGK;ENST00000496784.1_1_7:141255266-141296442:+|nuORF;ENST00000465241.5_1_7:141255266-141315366:+|nuORF	ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	MSMS	HCT116MG_D190212_S1	1	724.8916625976562	2	724.893503	1447.77245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.301	1	39.301	38.801	39.801	0								0	0	0	0.95273	1	14739	14739		4.897	1.9018	1				34868	830	22141	22261	33579	33579					0.06647834371096906
TVGASLRITET	11	Unmodified	_TVGASLRITET_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	HCT116MG_D190212_S2	2	574.3201904296875	2	574.319502	1146.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.874	1	38.79	38.29	39.29	-0.084618								0	0	0	0.84073	1	14613	14613		27.629	0	1		+		34869	14227	22142	22262	33580	33580					0.05700478326548364
TVGCELRPSL	10	Unmodified	_TVGCELRPSL_					0	0	0			REV__ENST00000504216.5_1_4:103822276-103853306:-|nuORF	REV__ENST00000504216.5_1_4:103822276-103853306:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	358.8585510253906	3	358.858586	1073.55393	-0.2841	-0.00010195	-0.27484	-9.8627E-05	-0.55894	-0.00020058	358.8585606009595	21.89	0.31254	21.505	21.323	21.635	-0.38503					9	5	2	0	0	0	0.69965	1	7763	7763		13.519	2.0008	1	9001000	+		34870	16130	22143	22263	33581	33581					0.020094817372410034
TVGCELRPSL	10	Unmodified	_TVGCELRPSL_					0	0	0			REV__ENST00000504216.5_1_4:103822276-103853306:-|nuORF	REV__ENST00000504216.5_1_4:103822276-103853306:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	358.8583984375	3	358.858586	1073.55393	-0.2401	-8.6162E-05	-0.17199	-6.172E-05	-0.41209	-0.00014788	358.8585044755575	21.077	0.31215	21.112	20.923	21.235	0.034473					13	5	3	0	0	0	0.78781	1	7327	7327		7.9454	0.46833	1	5950900	+		34871	16130	22143	22263	33582	33582					0.020094817372410034
TVGCELRPSL	10	Unmodified	_TVGCELRPSL_					0	0	0			REV__ENST00000504216.5_1_4:103822276-103853306:-|nuORF	REV__ENST00000504216.5_1_4:103822276-103853306:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	358.8584289550781	3	358.858586	1073.55393	-0.0044871	-1.6102E-06	-0.32754	-0.00011754	-0.33202	-0.00011915	358.8584196578575	21.449	0.25993	21.23	21.01	21.27	-0.21832					7	4	2	0	0	0	0.67188	1	7416	7416		14.957	5.9809	1	3300600	+		34872	16130	22143	22263	33583	33583					0.020094817372410034
TVGCELRPSL	10	Unmodified	_TVGCELRPSL_					0	0	0			REV__ENST00000504216.5_1_4:103822276-103853306:-|nuORF	REV__ENST00000504216.5_1_4:103822276-103853306:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	358.858586	1073.55393	-0.2841	-0.00010195	-0.27484	-9.8627E-05	-0.55894	-0.00020058	358.8585606009595	21.89	0.31254	21.505	21.323	21.635	-0.38503	0.22253	-3.0494E-05	NaN	14.957	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9001000	+		34873	16130	22143	22263							0.020094817372410034
TVGDIVLLRAL	11	Unmodified	_TVGDIVLLRAL_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MSMS	HCT116MG_D190212_S1	1	585.6888427734375	2	585.366256	1168.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.335	1	51.335	50.835	51.835	0								0	0	0	0.94538	1	19610	19610		8.7454	1.1365	1				34874	6537	22144	22264	33584	33584					0.1403482249966146
TVGDLRDFV	9	Unmodified	_TVGDLRDFV_					0	0	0		nc|ENSG00000169696|Q9BZE9-2|ASPSCR1;ENST00000585274.1_1_17:79967368-79974654:+|nuORF;ENST00000578236.5_1_17:79966858-79974746:+|nuORF;ENST00000577733.5_1_17:79966858-79975195:+|nuORF;nc|ENSG00000169696|Q9BZE9-3|ASPSCR1;ENSG00000169696|ENST00000306739|ASPSCR1	nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	MULTI-SECPEP	HCT116MG_D190212_S2	2	511.28765869140625	2	511.269281	1020.52401	0.49463	0.00025289	-0.079217	-4.0501E-05	0.41541	0.00021239	511.26918359146833	43.814	0.30869	43.736	43.556	43.865	-0.078373					8	5	2	0	0	0	0.19273	1	16579	16579		22.736	3.4793	1	18581000			34875	9544	22145	22265	33585	33585					0.014568660635632114
TVGGGIGV	8	Unmodified	_TVGGGIGV_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	HCT116MG_D190212_S1	1	659.3724365234375	1	659.372266	658.36499	0.36438	0.00024026	-0.40915	-0.00026978	-0.044773	-2.9522E-05	659.3718160573247	37.89	0.20803	37.89	37.811	38.019	0					5	3	2	0	0	0	0.36164	1	14196	14196		53.576	0	1	7088600	+		34876	10675	22146	22266	33586	33586					0.02214197226089709
TVGLIILIEIL	11	Unmodified	_TVGLIILIEIL_					0	0	0			REV__SEL1L2|p.Y361Tfs*29|1|0.04|ENSG00000101251|chr20:13876061-13876061|A/-|frameshift_variant	REV__SEL1L2|p.Y361Tfs*29|1|0.04|ENSG00000101251|chr20:13876061-13876061|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	598.8975219726562	2	598.896857	1195.77916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.715	1	39.715	39.215	40.215	0								0	0	0	0.95113	1	14906	14906		5.7319	2.7366	1		+		34877	11118	22147	22267	33587	33587					0.1891033447909649
TVGPYVTSEY	10	Unmodified	_TVGPYVTSEY_					0	0	0			REV__tr|U7SLA8|U7SLA8_FUSNUUDP-N-acetyl-D-galactosaminedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01952PE=3SV=1	REV__tr|U7SLA8|U7SLA8_FUSNUUDP-N-acetyl-D-galactosaminedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01952PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	558.2788696289062	2	558.266404	1114.51826	0.46408	0.00025908	0.04375	2.4424E-05	0.50783	0.0002835	558.2663694553081	45.118	0.57196	45.026	44.839	45.411	-0.092476					19	10	3	0	0	0	0.56527	1	17272	17272		30.637	6.616	1	34883000	+		34878	17707	22148	22268	33588	33588					-0.03442277238764291
TVGRERSL	8	Unmodified	_TVGRERSL_					0	0	0		ZNF251|p.R179I|1|0.05|ENSG00000198169|chr8:144723124-144723124|C/A|missense_variant;ENSG00000198169|ENST00000292562|ZNF251	ZNF251|p.R179I|1|0.05|ENSG00000198169|chr8:144723124-144723124|C/A|missense_variant	ZNF251|p.R179I|1|0.05|ENSG00000198169|chr8:144723124-144723124|C/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	459.7173767089844	2	459.261791	916.509028	0.050514	2.3199E-05	0.56041	0.00025738	0.61093	0.00028058	459.26203652532126	15.841	0.2088	15.507	15.376	15.585	-0.33451					5	3	2	0	0	0	0.30313	1	5257	5257		14.838	0	1	3023400			34879	6210	22149	22269	33589	33589					0.047434189862428866
TVGSGKGL	8	Unmodified	_TVGSGKGL_					0	0	0			REV__tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	REV__tr|U7SU48|U7SU48_FUSNUTrimericautotransporteradhesinYadA-likeC-terminalmembraneanchordomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01019PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	359.0283508300781	2	359.708328	717.402104	0.075067	2.7002E-05	0.10725	3.858E-05	0.18232	6.5582E-05	359.7083262432886	20.722	0.20821	20.722	20.592	20.8	0					5	3	2	0	0	0	0.33021	1	7271	7271		2.5775	0	1	2613500	+		34880	17817	22150	22270	33590	33590					0.03209868771853053
TVGYATLA	8	Unmodified	_TVGYATLA_					0	0	0			REV__NTSR2|p.F224_N226delinsY|1|0.37|ENSG00000169006|chr2:11662189-11662194|TCAGGA/-|inframe_deletion	REV__NTSR2|p.F224_N226delinsY|1|0.37|ENSG00000169006|chr2:11662189-11662194|TCAGGA/-|inframe_deletion	MULTI-MSMS	HCT116MG_D190212_S2	2	398.21575927734375	2	398.215986	794.417419	-0.010045	-4.0001E-06	-0.012534	-4.9911E-06	-0.022579	-8.9911E-06	398.21585504196827	27.766	0.41129	27.424	27.295	27.706	-0.34201					16	7	3	0	0	0	0.73076	1	10101	10101		19.439	0	1	197880000	+		34881	17356	22151	22271	33591	33591					0.011987355690507684
TVIAAQNLSA	10	Unmodified	_TVIAAQNLSA_					0	0	0		sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1;sp|F5HEN8|HELI_HCMVMDNAreplicationhelicaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	494.2773132324219	2	494.277106	986.53966	0.30916	0.00015281	-0.0027658	-1.3671E-06	0.3064	0.00015144	494.2771208815018	40.333	0.26606	39.955	39.816	40.082	-0.37828					8	5	2	0	0	0	0.19283	1	14781	14781		60.074	0	1	7131700			34882	18201	22152	22272	33592	33592					0.0458515258060288
TVIAKVNNV	9	Unmodified	_TVIAKVNNV_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MSMS	HCT116MG_D190212_S2	2	479.2901306152344	2	479.290017	956.565481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.794	1	29.493	28.993	29.993	-0.30095								0	0	0	0.023131	1	10928	10928		88.954	35.121	1				34883	2386	22153	22273	33593	33593					0.0854604682289164
TVICRIREIF	10	Unmodified	_TVICRIREIF_					0	0	0			REV__nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	REV__nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	MSMS	HCT116MG_D190212_S3	3	417.23992919921875	3	417.241031	1248.70126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.779	1	48.463	47.963	48.963	-0.31596								0	0	0	0.95381	1	18356	18356		3.8763	2.1341	1		+		34884	17132	22154	22274	33594	33594					0.08685998342048151
TVIGNEYQEY	10	Unmodified	_TVIGNEYQEY_					0	0	0			REV__tr|U7SS54|U7SS54_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01548PE=4SV=1	REV__tr|U7SS54|U7SS54_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01548PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	607.8347778320312	2	608.280043	1214.54553	0.55389	0.00033692	-0.33785	-0.00020551	0.21603	0.00013141	608.2799045818329	42.215	0.25856	42.146	42.016	42.274	-0.068199					6	4	2	0	0	0	0.86339	1	16005	16005		6.7232	6.7232	1	7892600	+		34885	17763	22155	22275	33595	33595					-0.05315793698378002
TVIMQNNA	8	Unmodified	_TVIMQNNA_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	HCT116MG_D190212_S4	4	445.72369384765625	2	445.723652	889.432752	0.21505	9.5852E-05	-0.25755	-0.00011479	-0.042499	-1.8943E-05	445.72371342378335	26.578	0.20792	26.277	26.182	26.389	-0.30087					5	3	2	0	0	0	0.8506	1	9508	9508		5.2307	0	1	897500			34886	5848	22156	22276	33596	33596					-0.016387209054073537
TVITRKIAIK	10	Unmodified	_TVITRKIAIK_					0	0	0			REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	REV__tr|U7SFX4|U7SFX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02268PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	571.8845825195312	2	571.884616	1141.75468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.173	1	60.019	59.519	60.519	-0.15441								0	0	0	0.95776	1	23283	23283		2.9952	1.3426	1		+		34887	17665	22157	22277	33597	33597					0.18947119116205613
TVIVMNKF	8	Unmodified	_TVIVMNKF_					0	0	0			REV__NLRC4|p.N539Tfs*8|1|0.29|ENSG00000091106|chr2:32250248-32250248|T/-|frameshift_variant	REV__NLRC4|p.N539Tfs*8|1|0.29|ENSG00000091106|chr2:32250248-32250248|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	476.27008056640625	2	476.270238	950.525924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.773	1	30.773	30.273	31.273	0								0	0	0	0.8837	1	11299	11299		8.5933	2.8329	1		+		34888	10992	22158	22278	33598	33598					0.04868203547835037
TVIWKVLFHL	10	Unmodified	_TVIWKVLFHL_					0	0	0		MON2|p.T1274Qfs*3|1|0.36|ENSG00000061987|chr12:62560894-62560894|T/-|frameshift_variant;MON2|p.V1435Afs*17|1|0.03|ENSG00000061987|chr12:62566430-62566431|-/CATCT|frameshift_variant;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	MON2|p.T1274Qfs*3|1|0.36|ENSG00000061987|chr12:62560894-62560894|T/-|frameshift_variant	MON2|p.T1274Qfs*3|1|0.36|ENSG00000061987|chr12:62560894-62560894|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	628.3829345703125	2	628.381709	1254.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.447	1	55.447	54.947	55.947	0								0	0	0	0.95648	1	21292	21292		3.2813	0	1				34889	1119	22159	22279	33599	33599					0.1316802060455302
TVKKKIEPVK	10	Unmodified	_TVKKKIEPVK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S1	1	585.3848876953125	2	585.384448	1168.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.485	1	60.485	59.985	60.985	0								0	0	0	0.96453	1	23316	23316		1.4819	0	1		+		34890	12706	22160	22280	33600	33600					0.1767169939635096
TVKLIFAIVV	10	Unmodified	_TVKLIFAIVV_					0	0	0		ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	MSMS	HCT116MG_D190212_S2	2	552.1298217773438	2	551.86536	1101.71617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.983	1	48.829	48.329	49.329	-0.15405								0	0	0	0.95351	1	18732	18732		3.9444	0	1				34891	5295	22161	22281	33601	33601					0.1693781348169523
TVKRHPIP	8	Unmodified	_TVKRHPIP_					0	0	0			REV__ENST00000541434.5_1_11:115102192-115109291:-|nuORF	REV__ENST00000541434.5_1_11:115102192-115109291:-|nuORF	MSMS	HCT116MG_D190212_S4	4	474.2911071777344	2	474.292894	946.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.085	1	38.705	38.205	39.205	-0.38055								0	0	0	0.8837	1	14349	14349		5.7604	0	1		+		34892	16370	22162	22282	33602	33602					0.09581190125220473
TVKYGIREI	9	Unmodified	_TVKYGIREI_					0	0	0			REV__ENSG00000186919|ENST00000334586|ZACN	REV__ENSG00000186919|ENST00000334586|ZACN	MSMS	HCT116MG_D190212_S3	3	360.2129821777344	3	360.213358	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.933	1	32.648	32.148	33.148	-0.28511								0	0	0	0.76793	1	12088	12088		8.1555	0	1		+		34893	13906	22163	22283	33603	33603					0.0825400488570267
TVLAKRRL	8	Unmodified	_TVLAKRRL_					0	0	0		ENST00000371059.7_1_1:66038015-66038081:+|nuORF	ENST00000371059.7_1_1:66038015-66038081:+|nuORF	ENST00000371059.7_1_1:66038015-66038081:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	478.8218078613281	2	478.821818	955.629084	0.068724	3.2906E-05	0.49006	0.00023465	0.55878	0.00026756	478.8218514992262	58.387	0.50776	58.387	58.261	58.769	0					14	9	2	0	0	0	0.87635	1	22517	22517		0.69038	0	1	70642000			34894	7438	22164	22284	33604	33604					0.14949452050655054
TVLAYLYEI	9	Unmodified	_TVLAYLYEI_					0	0	0		SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant;SPEF2|p.I1348Nfs*12|1|0.34|ENSG00000152582|chr5:35773981-35773982|-/A|frameshift_variant;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	362.2037048339844	3	362.202347	1083.58521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.641	1	14.641	14.141	15.141	0								0	0	0	0.7689	1	4807	4807		2.7352	0	1				34895	4157	22165	22285	33605	33605					0.04676378042995566
TVLDFIELF	9	Unmodified	_TVLDFIELF_					0	0	0		ENSG00000132744|ENST00000255082|ACY3	ENSG00000132744|ENST00000255082|ACY3	ENSG00000132744|ENST00000255082|ACY3	MSMS	HCT116MG_D190212_S3	3	366.2021789550781	3	366.202347	1095.58521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.336	1	45.025	44.525	45.525	-0.31094								0	0	0	0.76875	1	16971	16971		5.2969	0	1				34896	3207	22166	22286	33606	33606					0.04124378042979515
TVLELNEKI	9	Unmodified	_TVLELNEKI_					0	0	0		ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192	ENSG00000230561|ENST00000514853|CCDC192	ENSG00000230561|ENST00000514853|CCDC192	MULTI-MSMS	HCT116MG_D190212_S2	2	529.8082275390625	2	529.808239	1057.60193	0.44541	0.00023598	-0.27425	-0.0001453	0.17116	9.0681E-05	529.8080352220035	55.385	0.20358	55.199	55.072	55.276	-0.18565					6	3	2	0	0	0	0.29516	1	21370	21370		31.268	0	1	214850000			34897	6500	22167	22287	33607	33607					0.0754287892893899
TVLGRNLSK	9	Unmodified	_TVLGRNLSK_					0	0	0		ENST00000561014.1_1_15:49531438-49610381:+|nuORF;ENST00000560119.5_1_15:49527865-49611209:+|nuORF;nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2	ENST00000561014.1_1_15:49531438-49610381:+|nuORF	ENST00000561014.1_1_15:49531438-49610381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	494.30133056640625	2	494.300916	986.587279	0.27319	0.00013504	0.36431	0.00018008	0.6375	0.00031512	494.3010078997735	51.674	0.35555	51.674	51.451	51.807	0					19	6	4	0	0	0	0.71345	1	19733	19733		4.3292	0	1	260580000			34898	4305	22168	22288	33608	33608					0.09344851571472645
TVLIVLFLRKH	11	Unmodified	_TVLIVLFLRKH_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MSMS	HCT116MG_D190212_S3	3	669.935791015625	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.946	1	52.64	52.14	53.14	-0.30637								0	0	0	0.95636	1	20028	20028		2.9952	0	1				34899	3116	22169	22289	33609	33609					0.19931356450001658
TVLKRYQNLKP	11	Unmodified	_TVLKRYQNLKP_					0	0	0		nc|ENSG00000107643|P45983-5|MAPK8;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000429041.5_1_10:49609691-49609823:+|nuORF;ENST00000476134.1_1_10:49609691-49618268:+|nuORF;MAPK8|p.N205Tfs*45|1|0.07|ENSG00000107643|chr10:48420315-48420315|A/-|frameshift_variant;nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000109339|ENST00000641462|MAPK10	nc|ENSG00000107643|P45983-5|MAPK8	nc|ENSG00000107643|P45983-5|MAPK8	MSMS	HCT116MG_D190212_S2	2	680.4072875976562	2	680.408986	1358.80342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.797	1	50.625	50.125	51.125	-0.1719								0	0	0	0.95113	1	19475	19475		5.7319	0	1				34900	2122	22170	22290	33610	33610					0.1383698768531758
TVLLLKKKKK	10	Unmodified	_TVLLLKKKKK_					0	0	0		ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	ENST00000378289.8_1_10:14940166-14940367:-|nuORF	MSMS	HCT116MG_D190212_S3	3	400.2911071777344	3	400.291831	1197.85366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.616	1	27.427	26.927	27.927	-0.18847								0	0	0	0.96836	1	9960	9960		0.62683	0.35781	1				34901	7541	22171	22291	33611	33611					0.26265142081092563
TVLPRIWKVPD	11	Unmodified	_TVLPRIWKVPD_					0	0	0		ENST00000480174.5_1_1:84335647-84372167:-|nuORF;ENST00000488014.5_1_1:84352960-84383379:-|nuORF;nc|ENSG00000137941|Q6ZT98-3|TTLL7;ENSG00000137941|ENST00000260505|TTLL7	ENST00000480174.5_1_1:84335647-84372167:-|nuORF	ENST00000480174.5_1_1:84335647-84372167:-|nuORF	MSMS	HCT116MG_D190212_S2	2	662.395751953125	2	662.392805	1322.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.961	1	40.891	40.391	41.391	-0.069626								0	0	0	0.94755	1	15462	15462		7.609	1.8771	1				34902	3516	22172	22292	33612	33612					0.12258200282303733
TVLQRTQESVV	11	Unmodified	_TVLQRTQESVV_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-2|EMSY	REV__nc|ENSG00000158636|Q7Z589-2|EMSY	MULTI-MSMS	HCT116MG_D190212_S2	2	630.351318359375	2	630.351334	1258.68811	0.45957	0.00028969	-0.67454	-0.0004252	-0.21497	-0.00013551	630.3510067629412	46.313	0.30959	46.202	46.008	46.317	-0.11121					8	5	2	0	0	0	0.7093	1	17670	17670		18.373	0	1	12749000	+		34903	12788	22173	22293	33613	33613					0.06911838763653577
TVLRKKCRLLS	11	Unmodified	_TVLRKKCRLLS_					0	0	0		ENST00000480169.1_1_1:40204667-40204940:+|nuORF	ENST00000480169.1_1_1:40204667-40204940:+|nuORF	ENST00000480169.1_1_1:40204667-40204940:+|nuORF	MSMS	HCT116MG_D190212_S1	1	658.9136962890625	2	658.913381	1315.81221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.941	1	53.941	53.441	54.441	0								0	0	0	0.95473	1	20671	20671		4.5289	0	1				34904	8235	22174	22294	33614	33614					0.16693638050151094
TVLTHKLPRYV	11	Unmodified	_TVLTHKLPRYV_					0	0	0			REV__nc|ENSG00000118816|Q14094-2|CCNI	REV__nc|ENSG00000118816|Q14094-2|CCNI	MSMS	HCT116MG_D190212_S3	3	442.9324645996094	3	442.934595	1325.78196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.569	1	53.266	52.766	53.766	-0.30305								0	0	0	0.95636	1	20278	20278		1.2148	0	1		+		34905	11643	22175	22295	33615	33615					0.13209602656570496
TVLTPVVT	8	Unmodified	_TVLTPVVT_					0	0	0			REV__TCTN3|p.P76Lfs*19|1|0.36|ENSG00000119977|chr10:95693673-95693673|G/-|frameshift_variant	REV__TCTN3|p.P76Lfs*19|1|0.36|ENSG00000119977|chr10:95693673-95693673|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	415.2543029785156	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.495	1	49.133	48.633	49.633	-0.36213								0	0	0	0.8837	1	18361	18361		2.0598	0	1		+		34906	11681	22176	22296	33616	33616					0.07456168154271836
TVLTRSKR	8	Unmodified	_TVLTRSKR_					0	0	0		nc|ENSG00000165304|Q14680-3|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-3|MELK	MULTI-MSMS	HCT116MG_D190212_S1	1	480.8011169433594	2	480.801083	959.587613	-0.046866	-2.2533E-05	0.11527	5.5424E-05	0.068408	3.289E-05	480.8010313485266	50.755	0.67206	50.755	50.574	51.246	0					42	12	5	0	0	0	0.58007	1	19355	19355		34.102	10.954	1	1866399999.9999998			34907	4762	22177	22297	33617	33617					0.10620271291327299
TVLTRSKR	8	Unmodified	_TVLTRSKR_					0	0	0		nc|ENSG00000165304|Q14680-3|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-3|MELK	MULTI-MSMS	HCT116MG_D190212_S2	2	480.8015441894531	2	480.801083	959.587613	0.19194	9.2286E-05	0.18872	9.0735E-05	0.38066	0.00018302	480.8010525959769	51.368	1.8559	51.189	50.604	52.46	-0.17868					102	35	5	0	0	0	0.78216	1	19543	19543		13.508	0	1	462420000			34908	4762	22177	22297	33618	33618					0.10620271291327299
TVLVWTGLRY	10	Unmodified	_TVLVWTGLRY_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MSMS	HCT116MG_D190212_S4	4	403.2327575683594	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3675	1	2.1029	1.6029	2.6029	-0.26456								0	0	0	0.97045	1	724	724		0.15932	0	1		+		34909	12857	22178	22298	33619	33619					0.08102266811124537
TVMRLRRHP	9	Unmodified	_TVMRLRRHP_					0	0	0			REV__nc|ENSG00000170085|Q8NDZ2-3|SIMC1	REV__nc|ENSG00000170085|Q8NDZ2-3|SIMC1	MSMS	HCT116MG_D190212_S4	4	389.2290344238281	3	389.229348	1164.66621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.279	1	26.967	26.467	27.467	-0.3114								0	0	0	0.76998	1	9758	9758		0.96228	0.18574	1		+		34910	13278	22179	22299	33620	33620					0.09046800324767901
TVMYFYHYFDY	11	Unmodified	_TVMYFYHYFDY_					0	0	0			REV__ENSG00000101188|ENST00000370501|NTSR1	REV__ENSG00000101188|ENST00000370501|NTSR1	MSMS	HCT116MG_D190212_S2	2	774.8286743164062	2	774.828846	1547.64314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.362	1	24.986	24.486	25.486	-0.37521								0	0	0	0.95636	1	9130	9130		2.9952	1.6657	1		+		34911	11116	22180	22300	33621	33621					-0.10877728093896621
TVMYLPKY	8	Unmodified	_TVMYLPKY_					0	0	0		nc|ENSG00000162669|A2PYH4-2|HFM1;ENST00000462405.5_1_1:91728075-91813019:-|nuORF;HFM1|p.K1137Hfs*4|1|0.1|ENSG00000162669|chr1:91277045-91277046|-/ATTTAAAGTG|frameshift_variant;HFM1|p.K1137Nfs*44|1|0.18|ENSG00000162669|chr1:91277043-91277043|T/-|frameshift_variant;HFM1|p.V1397Sfs*6|1|0.31|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant;HFM1|p.N1388Tfs*37|1|0.26|ENSG00000162669|chr1:91262316-91262316|T/-|frameshift_variant;ENSG00000162669|ENST00000370425|HFM1	nc|ENSG00000162669|A2PYH4-2|HFM1	nc|ENSG00000162669|A2PYH4-2|HFM1	MULTI-MSMS	HCT116MG_D190212_S2	2	507.7313232421875	2	507.770071	1013.52559	0.35793	0.00018174	-0.65845	-0.00033434	-0.30052	-0.0001526	507.76984530768254	20.483	0.31954	20.103	19.969	20.289	-0.37949					9	5	2	0	0	0	0.79062	1	7117	7117		12.532	0	1	14984000			34912	4543	22181	22301	33622	33622					0.019367838279663374
TVNNPVNVQKH	11	Unmodified	_TVNNPVNVQKH_					0	0	0			REV__ENST00000491769.1_1_2:238233419-238250825:-|nuORF	REV__ENST00000491769.1_1_2:238233419-238250825:-|nuORF	MSMS	HCT116MG_D190212_S4	4	625.3358154296875	2	625.336018	1248.65748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.633	1	27.311	26.811	27.811	-0.32157								0	0	0	0.95153	1	9901	9901		6.6304	1.7334	1		+		34913	10243	22182	22302	33623	33623					0.04310105169270173
TVPAADELDKV	11	Unmodified	_TVPAADELDKV_					0	0	0			REV__NRDE2|p.N752Tfs*5|1|0.34|ENSG00000119720|chr14:90289120-90289120|T/-|frameshift_variant	REV__NRDE2|p.N752Tfs*5|1|0.34|ENSG00000119720|chr14:90289120-90289120|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	578.803955078125	2	579.306061	1156.59757	0.4134	0.00023948	-2.965	-0.0017176	-2.5516	-0.0014781	579.3042800644623	43.483	0.31166	43.483	43.212	43.524	0					7	5	2	0	0	0	0.36341	1	16407	16407		7.1017	0	1	23469000	+		34914	11668	22183	22303	33624	33624					0.025533697153605317
TVPADAAPP	9	Unmodified	_TVPADAAPP_					0	0	0			REV__nc|ENSG00000147573|Q9BYV6-2|TRIM55	REV__nc|ENSG00000147573|Q9BYV6-2|TRIM55	MULTI-MSMS	HCT116MG_D190212_S3	3	419.8185729980469	2	419.718893	837.423233	0.20589	8.6414E-05	-0.054033	-2.2679E-05	0.15185	6.3736E-05	419.7187760907507	29.066	1.2045	28.844	28.525	29.73	-0.22196					46	22	3	0	0	0	0.55919	1	10423	10423		13.508	0	1	18226000	+		34915	12518	22184	22304	33625	33625					-0.0019816591928929483
TVPADFNDSQ	10	Unmodified	_TVPADFNDSQ_					0	0	0		ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	546.7415771484375	2	547.24346	1092.47237	0.54022	0.00029563	-1.6377	-0.00089625	-1.0975	-0.00060061	547.2427670999901	45.12	0.31282	44.811	44.68	44.993	-0.30927					7	5	2	0	0	0	0.30868	1	16895	16895		11.495	3.5846	1	5357200			34916	8481	22185	22305	33626	33626					-0.07016922420984884
TVPAPPLAPPL	11	Unmodified	_TVPAPPLAPPL_					0	0	0		nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.1657104492188	2	536.823692	1071.63283	0.56025	0.00030076	0.17004	9.1283E-05	0.73029	0.00039204	536.8236309940332	56.84	0.15905	56.661	56.528	56.687	-0.17904					6	2	3	0	0	0	0.35998	1	21901	21901		6.2058	2.2614	1	6468000			34917	4345	22186	22306	33627	33627					0.09988077033835907
TVPQLFPATI	10	Unmodified	_TVPQLFPATI_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	HCT116MG_D190212_S2	2	543.76416015625	2	543.813325	1085.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.55	1	48.407	47.907	48.907	-0.1437								0	0	0	0.81962	1	18553	18553		26.268	0.86883	1		+		34918	12541	22187	22307	33628	33628					0.07271486654190085
TVPQLFPATI	10	Unmodified	_TVPQLFPATI_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	HCT116MG_D190212_S2	2	543.8036499023438	2	543.813325	1085.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.64	1	48.497	47.997	48.997	-0.1437								0	0	0	0.76907	1	18590	18590		32.786	2.1491	1		+		34919	12541	22187	22307	33629	33629					0.07271486654190085
TVPRKVLFHLR	11	Unmodified	_TVPRKVLFHLR_					0	0	0		WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant;ENSG00000176473|ENST00000402312|WDR25	WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	WDR25|p.H424Pfs*45|1|0.16|ENSG00000176473|chr14:100526032-100526033|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	682.9627685546875	2	683.427513	1364.84047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.397	1	45.397	44.897	45.897	0								0	0	0	0.95408	1	17199	17199		4.1895	0.90819	1				34920	5422	22188	22308	33630	33630					0.17264704021727084
TVPRVQRVP	9	Unmodified	_TVPRVQRVP_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	HCT116MG_D190212_S3	3	351.216552734375	3	351.217214	1050.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.481	1	58.211	57.711	58.711	-0.26932								0	0	0	0.76995	1	22248	22248		1.0715	0	1		+		34921	11511	22189	22309	33631	33631					0.10652246699692114
TVPVPVGH	8	Unmodified	_TVPVPVGH_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	HCT116MG_D190212_S4	4	403.2322998046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.569	1	11.388	10.888	11.888	-0.18135								0	0	0	0.8837	1	3575	3575		0.69038	0	1		+		34922	14214	22190	22310	33632	33632					0.039341480428561226
TVPYFLHIVIN	11	Unmodified	_TVPYFLHIVIN_					0	0	0			REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|125|3|anti-sense	REV__L1MC5_dup2220|chr2:240617463-240619377:-|3.828069485315853|0.4393122126493036|3.12|483.0|125|3|anti-sense	MSMS	HCT116MG_D190212_S2	2	658.376953125	2	658.374081	1314.73361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.697	1	45.595	45.095	46.095	-0.1014								0	0	0	0.94343	1	17385	17385		12.241	4.0851	1		+		34923	16947	22191	22311	33633	33633					0.08883109016710478
TVQKLLKPFTW	11	Unmodified	_TVQKLLKPFTW_					0	0	0		nc|ENSG00000125485|Q9H8H2-4|DDX31;ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	nc|ENSG00000125485|Q9H8H2-4|DDX31	MSMS	HCT116MG_D190212_S2	2	680.6254272460938	2	680.903005	1359.79146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.083	1	31.853	31.353	32.353	-0.23009								0	0	0	0.95196	1	11859	11859		5.2969	0	1				34924	2889	22192	22312	33634	33634					0.12595370942108275
TVQKSMFHDVR	11	Unmodified	_TVQKSMFHDVR_					0	0	0		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MSMS	HCT116MG_D190212_S4	4	674.3450927734375	2	674.345529	1346.6765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.036	1	42.661	42.161	43.161	-0.37493								0	0	0	0.94851	1	15839	15839		7.1017	1.3699	1				34925	9591	22193	22313	33635	33635					0.017033184686624736
TVQLKLTEH	9	Unmodified	_TVQLKLTEH_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	HCT116MG_D190212_S1	1	535.21484375	2	534.806031	1067.59751	0.55375	0.00029615	-0.44744	-0.00023929	0.10632	5.686E-05	534.8059100695767	20.644	0.15585	20.644	20.54	20.696	0					4	2	2	0	0	0	0.23301	1	7237	7237		15.847	3.6065	1	899560	+		34926	13036	22194	22314	33636	33636					0.06641414506020737
TVQLKLTEH	9	Unmodified	_TVQLKLTEH_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MATCH	HCT116MG_D190212_S2	2		2	534.806031	1067.59751	0.40523	0.00021672	0.11136	5.9555E-05	0.51659	0.00027627	534.8061413255806	21.283	0.15451	20.9	20.807	20.961	-0.38288	0.12827	3.8467E-05	NaN	15.847	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5049500	+		34927	13036	22194	22314							0.06641414506020737
TVQLPLQKRLV	11	Unmodified	_TVQLPLQKRLV_					0	0	0		nc|nan|Q8N5N4-2|C3orf22;ENSG00000180697|ENST00000318225|C3orf22	nc|nan|Q8N5N4-2|C3orf22	nc|nan|Q8N5N4-2|C3orf22	MSMS	HCT116MG_D190212_S1	1	432.2803039550781	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.699	1	37.699	37.199	38.199	0								0	0	0	0.95665	1	14092	14092		2.8433	0	1				34928	5606	22195	22315	33637	33637					0.1781017569069263
TVQQPDSL	8	Unmodified	_TVQQPDSL_					0	0	0			REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	444.22686767578125	2	444.227082	886.439611	-0.247	-0.00010972	0.15858	7.0447E-05	-0.088416	-3.9277E-05	444.22712304301245	36.212	0.31205	35.912	35.729	36.042	-0.30042					8	5	2	0	0	0	0.44484	1	13368	13368		46.021	4.1813	1	5928200	+		34929	10788	22196	22316	33638	33638					-0.008150847531851468
TVQQPDSL	8	Unmodified	_TVQQPDSL_					0	0	0			REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	444.227082	886.439611	0.54917	0.00024395	0.4965	0.00022056	1.0457	0.00046451	444.22722379919094	36.038	0.25829	35.91	35.761	36.019	-0.12799	-0.00089516	0.00023645	NaN	46.021	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12644000	+		34930	10788	22196	22316							-0.008150847531851468
TVQQPDSL	8	Unmodified	_TVQQPDSL_					0	0	0			REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	444.227082	886.439611	-0.247	-0.00010972	0.15858	7.0447E-05	-0.088416	-3.9277E-05	444.22712304301245	36.212	0.31205	35.912	35.729	36.042	-0.30042	0.00089516	-6.3778E-05	NaN	46.021	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5928200	+		34931	10788	22196	22316							-0.008150847531851468
TVQVTSTAV	9	Unmodified	_TVQVTSTAV_					0	0	0		CON__P02668	CON__P02668	CON__P02668	MULTI-MSMS	HCT116MG_D190212_S4	4	905.4944458007812	1	905.493838	904.486562	0.64514	0.00058417	-0.058824	-5.3265E-05	0.58631	0.0005309	905.4937396861667	31.16	0.25725	30.79	30.662	30.919	-0.37026					8	4	2	0	0	0	0.097615	1	11324	11324		58.679	6.4105	1	4476000		+	34932	550	22197	22317	33639	33639					0.030497747979552514
TVRAKPNKIR	10	Unmodified	_TVRAKPNKIR_					0	0	0			REV__ERCC6L2|p.R438Gfs*15|1|0.38|ENSG00000182150|chr9:95921290-95921290|A/-|frameshift_variant	REV__ERCC6L2|p.R438Gfs*15|1|0.38|ENSG00000182150|chr9:95921290-95921290|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	394.9187316894531	3	394.919168	1181.73567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.401	1	63.278	62.778	63.778	-0.12264								0	0	0	0.97045	1	24577	24577		0.15932	0	1		+		34933	13705	22198	22318	33640	33640					0.1520758254514476
TVREELCPK	9	Unmodified	_TVREELCPK_					0	0	0		ENST00000376621.7_1_6:30513189-30513468:-|nuORF	ENST00000376621.7_1_6:30513189-30513468:-|nuORF	ENST00000376621.7_1_6:30513189-30513468:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	358.8523864746094	3	358.858586	1073.55393	-0.0044871	-1.6102E-06	-0.32754	-0.00011754	-0.33202	-0.00011915	358.8584196578575	21.449	0.25993	21.23	21.01	21.27	-0.21832					7	4	2	0	0	0	0.24126	1	7373	7373		12.175	0	1	3300600			34934	7518	22199	22319	33641	33641					0.020094817372410034
TVRERGLI	8	Unmodified	_TVRERGLI_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MULTI-MSMS	HCT116MG_D190212_S4	4	472.2876892089844	2	472.287808	942.561064	0.26448	0.00012491	0.12166	5.7457E-05	0.38614	0.00018237	472.2877840122135	51.838	1.6613	51.493	50.999	52.66	-0.34538					82	31	4	0	0	0	0.86564	1	19665	19665		2.5775	0	1	143680000			34935	6691	22200	22320	33642	33642					0.08748582400005489
TVRGHWFLS	9	Unmodified	_TVRGHWFLS_					0	0	0		ENST00000486074.2_1_10:60966594-61005348:+|nuORF;nc|ENSG00000165443|Q96FC7-2|PHYHIPL;ENSG00000165443|ENST00000373880|PHYHIPL;PHYHIPL|p.P126Qfs*7|1|0.31|ENSG00000165443|chr10:59236554-59236554|C/-|frameshift_variant;ENST00000522869.5_1_8:22081488-22084520:-|nuORF;ENSG00000168490|ENST00000454243|PHYHIP	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	MSMS	HCT116MG_D190212_S2	2	551.7928466796875	2	551.793258	1101.57196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.023	1	56.844	56.344	57.344	-0.17904								0	0	0	0.7663	1	22010	22010		13.906	0	1				34936	4774	22201	22321	33643	33643					0.025239847742795973
TVRRTWRRRRR	11	Unmodified	_TVRRTWRRRRR_					0	0	0			REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF	REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF	MSMS	HCT116MG_D190212_S4	4	799.9869995117188	2	799.987989	1597.96143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.684	1	42.309	41.809	42.809	-0.37493								0	0	0	0.96163	1	15697	15697		0.23584	0.23584	1		+		34937	14717	22202	22322	33644	33644					0.18636344507740432
TVRYIRIVP	9	Unmodified	_TVRYIRIVP_					0	0	0		CNTNAP1|p.A143V|1|0.29|ENSG00000108797|chr17:42685055-42685055|C/T|missense_variant	CNTNAP1|p.A143V|1|0.29|ENSG00000108797|chr17:42685055-42685055|C/T|missense_variant	CNTNAP1|p.A143V|1|0.29|ENSG00000108797|chr17:42685055-42685055|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	558.767822265625	2	558.848033	1115.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.479	1	34.479	33.979	34.979	0								0	0	0	0.7689	1	12794	12794		4.756	0	1				34938	503	22203	22323	33645	33645					0.12829990393584012
TVSSKRSKL	9	Unmodified	_TVSSKRSKL_					0	0	0			REV__nc|ENSG00000014123|O94874-2|UFL1	REV__nc|ENSG00000014123|O94874-2|UFL1	MSMS	HCT116MG_D190212_S1	1	503.3055725097656	2	503.306198	1004.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.773	1	44.773	44.273	45.273	0								0	0	0	0.76913	1	16946	16946		3.9444	0	1		+		34939	10537	22204	22324	33646	33646					0.09572834225900806
TVSSRWMWPQ	10	Unmodified	_TVSSRWMWPQ_					0	0	0		ENST00000206765.10_1_14:24718559-24718673:-|nuORF	ENST00000206765.10_1_14:24718559-24718673:-|nuORF	ENST00000206765.10_1_14:24718559-24718673:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	639.8106079101562	2	639.308415	1276.60228	0.48812	0.00031206	1.9796	0.0012656	2.4677	0.0015776	639.3097769553116	23.797	0.36482	23.736	23.53	23.895	-0.061449					12	6	3	0	0	0	0.80632	1	8443	8443		11.495	0.6952	1	2874100			34940	6727	22205	22325	33647	33647					-0.024960246228374672
TVSVGLQTDPP	11	Unmodified	_TVSVGLQTDPP_					0	0	0		nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	nc|ENSG00000149639|O94964-1|MTCL2	MSMS	HCT116MG_D190212_S4	4	557.2933349609375	2	557.292953	1112.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.204	1	27.873	27.373	28.373	-0.33138								0	0	0	0.92235	1	10132	10132		17.113	1.8644	1				34941	4069	22206	22326	33648	33648					0.01957100543904744
TVSVPSDP	8	Unmodified	_TVSVPSDP_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-5|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-5|SLC26A6	MSMS	HCT116MG_D190212_S4	4	401.2029724121094	2	401.203076	800.391599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.024	1	28.683	28.183	29.183	-0.34059								0	0	0	0.8396	1	10463	10463		19.439	0	1		+		34942	14307	22207	22327	33649	33649					-0.016581586732399956
TVSWHPVEPR	10	Unmodified	_TVSWHPVEPR_					0	0	0		ENST00000455858.2_2_12:117348775-117348865:+|nuORF	ENST00000455858.2_2_12:117348775-117348865:+|nuORF	ENST00000455858.2_2_12:117348775-117348865:+|nuORF	MSMS	HCT116MG_D190212_S3	3	403.2123107910156	3	403.212128	1206.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.43	1	31.16	30.66	31.66	-0.27028								0	0	0	0.91971	1	11482	11482		7.0371	0.41363	1				34943	8020	22208	22328	33650	33650					0.01951335111834851
TVTALKDVP	9	Unmodified	_TVTALKDVP_					0	0	0		nc|ENSG00000177426|Q15583-4|TGIF1;ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;nc|ENSG00000177426|Q15583|TGIF1;TGIF1|p.G352Lfs*32|1|0.87|ENSG00000177426|chr18:3457784-3457785|-/TC|frameshift_variant	nc|ENSG00000177426|Q15583-4|TGIF1	nc|ENSG00000177426|Q15583-4|TGIF1	MSMS	HCT116MG_D190212_S4	4	472.2754211425781	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.907	1	38.525	38.025	39.025	-0.38163								0	0	0	0.768	1	14276	14276		7.9102	0	1				34944	5456	22209	22329	33651	33651					0.06502938211701803
TVTAVRKG	8	Unmodified	_TVTAVRKG_					0	0	0			REV__ENST00000393640.8_1_16:70432432-70432528:-|nuORF	REV__ENST00000393640.8_1_16:70432432-70432528:-|nuORF	MSMS	HCT116MG_D190212_S3	3	416.1817321777344	2	416.255977	830.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.583	1	37.282	36.782	37.782	-0.30137								0	0	0	0.8837	1	13926	13926		5.2307	0	1		+		34945	15327	22210	22330	33652	33652					0.07537221962900276
TVTHQIRL	8	Unmodified	_TVTHQIRL_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MSMS	HCT116MG_D190212_S2	2	484.2879638671875	2	484.287808	966.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.656	1	27.314	26.814	27.814	-0.34201								0	0	0	0.62663	1	10055	10055		36.044	6.9626	1		+		34946	11410	22211	22331	33653	33653					0.07644582399984756
TVTIYLTIKT	10	Unmodified	_TVTIYLTIKT_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS;EYS|p.G2248Wfs*10|1|0.08|ENSG00000188107|chr6:63999167-63999168|-/A|frameshift_variant;EYS|p.F2463Rfs*16|1|0.05|ENSG00000188107|chr6:63806214-63806215|-/AAGACCT|frameshift_variant	ENSG00000188107|ENST00000503581|EYS	ENSG00000188107|ENST00000503581|EYS	MSMS	HCT116MG_D190212_S2	2	576.6334228515625	2	576.847364	1151.68018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.888	1	50.71	50.21	51.21	-0.17868								0	0	0	0.95507	1	19512	19512		3.5965	0	1				34947	5969	22212	22332	33654	33654					0.11040311514170753
TVTKRQEAL	9	Unmodified	_TVTKRQEAL_					0	0	0			REV__nc|ENSG00000175662|Q6ZVM7-4|TOM1L2	REV__nc|ENSG00000175662|Q6ZVM7-4|TOM1L2	MULTI-MSMS	HCT116MG_D190212_S2	2	523.3038330078125	2	523.303655	1044.59276	0.61928	0.00032407	-0.19256	-0.00010077	0.42672	0.00022331	523.3034198149621	47.329	1.5901	47.207	46.769	48.36	-0.12175					66	30	3	0	0	0	0.72852	1	17975	17975		3.2813	0	1	63378000	+		34948	13525	22213	22333	33655	33655					0.07224530363282611
TVTLQTVPL	9	Unmodified	_TVTLQTVPL_					0	0	0		ENSG00000120690|ENST00000239882|ELF1;nc|ENSG00000120690|P32519-2|ELF1	ENSG00000120690|ENST00000239882|ELF1	ENSG00000120690|ENST00000239882|ELF1	MSMS	HCT116MG_D190212_S4	4	486.2914123535156	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.081	1	55.775	55.275	56.275	-0.30626								0	0	0	0.76781	1	21014	21014		8.5933	0	1				34949	2707	22214	22334	33656	33656					0.08343511245789159
TVTSELAA	8	Unmodified	_TVTSELAA_					0	0	0		MAP4K2|p.S298Pfs*38|1|0.31|ENSG00000168067|chr11:64800133-64800133|G/-|frameshift_variant;MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant;nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2	MAP4K2|p.S298Pfs*38|1|0.31|ENSG00000168067|chr11:64800133-64800133|G/-|frameshift_variant	MAP4K2|p.S298Pfs*38|1|0.31|ENSG00000168067|chr11:64800133-64800133|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	791.4149780273438	1	791.414525	790.407249	1.1517	0.0009115	0.48882	0.00038686	1.6406	0.0012984	791.4146586998968	33.597	0.415	33.404	33.276	33.691	-0.19297					9	7	2	0	0	0	0.19622	1	12504	12504		74.396	0	1	19555000			34950	4980	22215	22335	33657	33657					0.0036612784381304664
TVTSELAA	8	Unmodified	_TVTSELAA_					0	0	0		MAP4K2|p.S298Pfs*38|1|0.31|ENSG00000168067|chr11:64800133-64800133|G/-|frameshift_variant;MAP4K2|p.G667Lfs*24|1|0.38|ENSG00000168067|chr11:64792003-64792004|-/AC|frameshift_variant;nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2	MAP4K2|p.S298Pfs*38|1|0.31|ENSG00000168067|chr11:64800133-64800133|G/-|frameshift_variant	MAP4K2|p.S298Pfs*38|1|0.31|ENSG00000168067|chr11:64800133-64800133|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		1	791.414525	790.407249	0.71625	0.00056685	-0.1293	-0.00010233	0.58695	0.00046452	791.4142784765985	33.687	0.25928	33.397	33.304	33.563	-0.29013	-0.0035779	-0.00011631	NaN	74.396	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3446200			34951	4980	22215	22335							0.0036612784381304664
TVTTEKELDT	10	Unmodified	_TVTTEKELDT_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;NISCH|p.T1019Rfs*140|1|0.14|ENSG00000010322|chr3:52488539-52488539|C/-|frameshift_variant;ENST00000489895.5_1_3:52512001-52514911:+|nuORF	ENSG00000010322|ENST00000345716|NISCH	ENSG00000010322|ENST00000345716|NISCH	MSMS	HCT116MG_D190212_S3	3	568.7875366210938	2	568.787701	1135.56085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.574	1	37.272	36.772	37.772	-0.30137								0	0	0	0.72975	1	13922	13922		36.127	2.0246	1				34952	880	22216	22336	33658	33658					-0.001509269011876313
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	HCT116MG_D190212_S1	1	974.5770874023438	1	974.576839	973.569563	0.71772	0.00069947	-0.16692	-0.00016268	0.5508	0.00053679	974.5765020174744	55.09	0.20359	55.09	54.943	55.146	0					7	3	3	0	0	0	0.023611	1	21160	21160		92.822	0	1	105490000			34953	2628	22217	22337	33659	33659					0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	HCT116MG_D190212_S2	2	974.5774536132812	1	974.576839	973.569563	0.65873	0.00064199	0.21087	0.00020551	0.8696	0.00084749	974.5769280209288	55.283	0.35686	55.095	54.968	55.325	-0.18797					14	6	3	0	0	0	0.023611	1	21314	21314		92.822	0	1	236970000			34954	2628	22217	22337	33660	33660					0.08172091525955238
TVTVTVPI	8	Unmodified	_TVTVTVPI_					0	0	0			REV__ENSG00000130561|ENST00000409110|SAG	REV__ENSG00000130561|ENST00000409110|SAG	MSMS	HCT116MG_D190212_S4	4	415.254150390625	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.652	1	37.268	36.768	37.768	-0.3839								0	0	0	0.8837	1	13819	13819		5.2307	0	1		+		34955	11930	22218	22338	33661	33661					0.07456168154271836
TVVAAKTKLY	10	Unmodified	_TVVAAKTKLY_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	547.33251953125	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.242	1	53.945	53.445	54.445	-0.2965								0	0	0	0.94107	1	20549	20549		6.7232	0	1		+		34956	9993	22219	22339	33662	33662					0.11167462062553568
TVVAAKTKLY	10	Unmodified	_TVVAAKTKLY_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	547.5958251953125	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.765	1	50.411	49.911	50.911	-0.35483								0	0	0	0.94107	1	18872	18872		6.7232	0	1		+		34957	9993	22219	22339	33663	33663					0.11167462062553568
TVVAAKTKLY	10	Unmodified	_TVVAAKTKLY_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	547.5166625976562	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.926	1	51.58	51.08	52.08	-0.34538								0	0	0	0.92272	1	19341	19341		10.824	4.1008	1		+		34958	9993	22219	22339	33664	33664					0.11167462062553568
TVVAALAL	8	Unmodified	_TVVAALAL_					0	0	0			REV__ENSG00000114650|ENST00000265565|SCAP	REV__ENSG00000114650|ENST00000265565|SCAP	MSMS	HCT116MG_D190212_S1	1	379.2438049316406	2	379.244547	756.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.732	1	20.732	20.232	21.232	0								0	0	0	0.8837	1	7261	7261		2.8892	0	1		+		34959	11513	22220	22340	33665	33665					0.08656202845395455
TVVAGQRAVLP	11	Unmodified	_TVVAGQRAVLP_					0	0	0		nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	nc|ENSG00000183853|Q96J84-3|KIRREL1	MSMS	HCT116MG_D190212_S4	4	555.836669921875	2	555.835123	1109.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.095	1	48.73	48.23	49.23	-0.365								0	0	0	0.95343	1	18199	18199		4.5289	0.19963	1				34960	5745	22221	22341	33666	33666					0.10525096151309299
TVVARGKPVSI	11	Unmodified	_TVVARGKPVSI_					0	0	0			REV__nc|ENSG00000112139|Q8NFP4-2|MDGA1	REV__nc|ENSG00000112139|Q8NFP4-2|MDGA1	MULTI-SECPEP	HCT116MG_D190212_S1	1	564.3651123046875	2	563.850773	1125.68699	0.28428	0.00016029	0.24528	0.0001383	0.52956	0.00029859	563.8507737409788	60.569	0.61712	60.569	60.387	61.004	0					17	11	3	0	0	0	0.36495	1	23505	23505		5.7319	1.7875	1	63714000	+		34961	11446	22222	22342	33667	33667					0.12917669185435443
TVVATLGQGP	10	Unmodified	_TVVATLGQGP_					0	0	0		GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant;GSK3A|p.G337Efs*11|1|0.5|ENSG00000105723|chr19:42233198-42233198|C/-|frameshift_variant;ENSG00000105723|ENST00000222330|GSK3A	GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant	GSK3A|p.Q238Gfs*17|1|0.25|ENSG00000105723|chr19:42234633-42234634|GG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	471.2867431640625	2	471.766374	941.518196	0.27212	0.00012838	-0.13971	-6.5908E-05	0.13242	6.2469E-05	471.76659827086706	25.807	0.31096	25.438	25.291	25.602	-0.36914					7	5	2	0	0	0	0.71349	1	9257	9257		19.257	1.1106	1	9517400			34962	2030	22223	22343	33668	33668					0.04509767551905952
TVVEKPQPK	9	Unmodified	_TVVEKPQPK_					0	0	0			REV__ENST00000497401.1_1_22:18049955-18062711:+|nuORF	REV__ENST00000497401.1_1_22:18049955-18062711:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	513.30322265625	2	513.303124	1024.5917	0.303	0.00015553	-0.36669	-0.00018822	-0.063688	-3.2691E-05	513.3028776017585	41.903	0.31248	41.834	41.601	41.913	-0.068199					7	5	2	0	0	0	0.37539	1	15876	15876		24.021	4.7636	1	23076000	+		34963	14911	22224	22344	33669	33669					0.0803831599437217
TVVEKPQPK	9	Unmodified	_TVVEKPQPK_					0	0	0			REV__ENST00000497401.1_1_22:18049955-18062711:+|nuORF	REV__ENST00000497401.1_1_22:18049955-18062711:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	513.303124	1024.5917	0.48494	0.00024892	-0.44459	-0.00022821	0.040349	2.0711E-05	513.8043880354066	41.94	0.20892	41.94	41.81	42.019	0	0.052875	-8.3764E-06	NaN	24.021	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8061500	+		34964	14911	22224	22344							0.0803831599437217
TVVEKPQPK	9	Unmodified	_TVVEKPQPK_					0	0	0			REV__ENST00000497401.1_1_22:18049955-18062711:+|nuORF	REV__ENST00000497401.1_1_22:18049955-18062711:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	513.303124	1024.5917	0.303	0.00015553	-0.36669	-0.00018822	-0.063688	-3.2691E-05	513.3028776017585	41.903	0.31248	41.834	41.601	41.913	-0.068199	-0.052875	7.16E-05	NaN	24.021	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23076000	+		34965	14911	22224	22344							0.0803831599437217
TVVGDNQL	8	Unmodified	_TVVGDNQL_					0	0	0			REV__ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant	REV__ENC1|p.S350Lfs*37|1|0.18|ENSG00000171617|chr5:74635439-74635439|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	423.22357177734375	2	423.2218	844.429047	0.32538	0.00013771	2.0936	0.00088604	2.4189	0.0010237	423.2236337159382	34.429	0.30968	34.253	34.124	34.433	-0.17512					8	5	2	0	0	0	0.74206	1	12839	12839		18.135	1.1927	1	12658000	+		34966	10456	22225	22345	33670	33670					0.0006093259237331949
TVVGTFVRQKQ	11	Unmodified	_TVVGTFVRQKQ_					0	0	0			REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	REV__CCAR1|p.S739Vfs*11|1|0.47|ENSG00000060339|chr10:68765992-68765992|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	631.3475952148438	2	631.864412	1261.71427	0.60171	0.0003802	3.0393	0.0019204	3.641	0.0023006	631.8681030504347	29.279	0.20425	28.963	28.863	29.067	-0.31613					5	3	2	0	0	0	0.36397	1	10681	10681		2.7352	1.7729	1	6380600	+		34967	10105	22226	22346	33671	33671					0.09388152725796317
TVVLLQQKIVP	11	Unmodified	_TVVLLQQKIVP_					0	0	0		GPHN|p.P192Lfs*44|1|0.2|ENSG00000171723|chr14:66922780-66922780|C/-|frameshift_variant	GPHN|p.P192Lfs*44|1|0.2|ENSG00000171723|chr14:66922780-66922780|C/-|frameshift_variant	GPHN|p.P192Lfs*44|1|0.2|ENSG00000171723|chr14:66922780-66922780|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	413.26629638671875	3	413.267463	1236.78056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8972	1	4.8972	4.3972	5.3972	0								0	0	0	0.96111	1	1477	1477		0.50596	0.051438	1				34968	9189	22227	22347	33672	33672					0.1716396856782012
TVVLLQQKIVP	11	Unmodified	_TVVLLQQKIVP_					0	0	0		GPHN|p.P192Lfs*44|1|0.2|ENSG00000171723|chr14:66922780-66922780|C/-|frameshift_variant	GPHN|p.P192Lfs*44|1|0.2|ENSG00000171723|chr14:66922780-66922780|C/-|frameshift_variant	GPHN|p.P192Lfs*44|1|0.2|ENSG00000171723|chr14:66922780-66922780|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	413.2662353515625	3	413.267463	1236.78056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7621	1	4.7846	4.2846	5.2846	0.022513								0	0	0	0.96111	1	1434	1434		0.50596	0.051438	1				34969	9189	22227	22347	33673	33673					0.1716396856782012
TVVLQYPKA	9	Unmodified	_TVVLQYPKA_					0	0	0		SMG1|p.A2648V|1|0.03|ENSG00000157106|chr16:18836047-18836047|G/A|missense_variant	SMG1|p.A2648V|1|0.03|ENSG00000157106|chr16:18836047-18836047|G/A|missense_variant	SMG1|p.A2648V|1|0.03|ENSG00000157106|chr16:18836047-18836047|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	509.2994079589844	2	509.800217	1017.58588	0.41472	0.00021142	0.89007	0.00045376	1.3048	0.00066518	509.80061405296806	55.953	0.20476	55.767	55.639	55.844	-0.18565					5	3	2	0	0	0	0.23771	1	21604	21604		14.838	0	1	26025000			34970	18175	22228	22348	33674	33674					0.07779217482698186
TVWIKPSGL	9	Unmodified	_TVWIKPSGL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	HCT116MG_D190212_S2	2	500.795166015625	2	500.794935	999.575317	0.52096	0.00026089	0.22378	0.00011207	0.74474	0.00037296	500.79497423452455	56.209	0.25796	56.026	55.898	56.156	-0.18261					7	4	2	0	0	0	0.45867	1	21712	21712		19.257	1.122	1	15498000			34971	3570	22229	22349	33675	33675					0.07551234828292763
TVWTWILG	8	Unmodified	_TVWTWILG_					0	0	0			REV__LAMA2|p.R1183W|1|0.34|ENSG00000196569|chr6:129314790-129314790|C/T|missense_variant	REV__LAMA2|p.R1183W|1|0.34|ENSG00000196569|chr6:129314790-129314790|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	488.2705383300781	2	488.268553	974.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.97	1	39.97	39.47	40.47	0								0	0	0	0.8837	1	15009	15009		14.582	0	1		+		34972	16967	22230	22350	33676	33676					0.03427276765467013
TVYERWWYEK	10	Unmodified	_TVYERWWYEK_					0	0	0		nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	nc|ENSG00000110514|Q8WXG6-7|MADD	MSMS	HCT116MG_D190212_S4	4	730.3544311523438	2	730.353877	1458.6932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.74	1	47.371	46.871	47.871	-0.36907								0	0	0	0.92917	1	17657	17657		9.3831	1.2276	1				34973	2251	22231	22351	33677	33677					-0.017798573737081824
TVYFYHDTLTN	11	Unmodified	_TVYFYHDTLTN_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MSMS	HCT116MG_D190212_S4	4	686.9871826171875	2	687.322242	1372.62993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.376	1	48.009	47.509	48.509	-0.36728								0	0	0	0.94012	1	17915	17915		11.495	0.6952	1		+		34974	13743	22232	22352	33678	33678					-0.041478428816162705
TWATLDESWE	10	Unmodified	_TWATLDESWE_					0	0	0			REV__TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant	REV__TEK|p.N809Tfs*21|1|0.22|ENSG00000120156|chr9:27206639-27206639|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	413.18505859375	3	413.183904	1236.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.733	1	49.371	48.871	49.871	-0.36213								0	0	0	0.92272	1	18457	18457		6.1918	2.3155	1		+		34975	11687	22233	22353	33679	33679					-0.07892080215447095
TWDIPPYHF	9	Unmodified	_TWDIPPYHF_					0	0	0			REV__MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|7|2|sense	REV__MER65-int_dup835|chr19:41770581-41771297:+|1.820753605061792|0.0130686126071448|7.12|477.0|7|2|sense	MULTI-MSMS	HCT116MG_D190212_S1	1	588.7814331054688	2	588.279649	1174.54475	0.68002	0.00040004	0.2518	0.00014813	0.93182	0.00054817	588.2797558459799	14.78	0.1561	14.78	14.702	14.858	0					4	2	2	0	0	0	0.71898	1	4892	4892		3.9444	0.3479	1	1832600	+		34976	17021	22234	22354	33680	33680					-0.03554543556765566
TWGVQSAV	8	Unmodified	_TWGVQSAV_					0	0	0		ENST00000562945.2_1_16:34428410-34428635:-|nuORF	ENST00000562945.2_1_16:34428410-34428635:-|nuORF	ENST00000562945.2_1_16:34428410-34428635:-|nuORF	MSMS	HCT116MG_D190212_S4	4	424.2176818847656	2	424.21906	846.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.019	1	55.709	55.209	56.209	-0.3102								0	0	0	0.8837	1	20989	20989		2.3027	0	1				34977	8830	22235	22355	33681	33681					-0.005787461994259502
TWHSRWCW	8	Unmodified	_TWHSRWCW_					0	0	0			REV__ENST00000264360.6_2_4:134071821-134071899:+|nuORF	REV__ENST00000264360.6_2_4:134071821-134071899:+|nuORF	MSMS	HCT116MG_D190212_S2	2	387.8390197753906	3	387.839749	1160.49742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.003	1	22.618	22.118	23.118	-0.3852								0	0	0	0.8837	1	8177	8177		6.2058	1.6769	1		+		34978	14665	22236	22356	33682	33682					-0.07641101308740872
TWLLACICIC	10	Unmodified	_TWLLACICIC_					0	0	0		nc|ENSG00000292373|Q01113-2|IL9R;ENSG00000124334|ENST00000244174|IL9R;nc|ENSG00000292373|Q01113-3|IL9R	nc|ENSG00000292373|Q01113-2|IL9R	nc|ENSG00000292373|Q01113-2|IL9R	MSMS	HCT116MG_D190212_S4	4	380.20068359375	3	380.18677	1137.53848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.858	1	58.574	58.074	59.074	-0.28305								0	0	0	0.93854	1	22134	22134		3.8763	0	1				34979	2843	22237	22357	33683	33683					-0.024788443758097856
TWLQNYWPKMF	11	Unmodified	_TWLQNYWPKMF_					0	0	0		ENST00000374264.6_1_9:114820802-114820910:-|nuORF	ENST00000374264.6_1_9:114820802-114820910:-|nuORF	ENST00000374264.6_1_9:114820802-114820910:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	757.8704223632812	2	757.368472	1512.72239	0.74893	0.00056721	-0.88787	-0.00067245	-0.13894	-0.00010523	757.3681242500514	32.208	0.67465	31.833	31.486	32.161	-0.37529					24	12	3	0	0	0	0.74191	1	11683	11683		4.897	0	1	7012100			34980	7493	22238	22358	33684	33684					-0.013460363491049065
TWMLRFVW	8	Unmodified	_TWMLRFVW_					0	0	0			REV__ENST00000454079.5_1_3:50099151-50099352:+|nuORF	REV__ENST00000454079.5_1_3:50099151-50099352:+|nuORF	MSMS	HCT116MG_D190212_S3	3	380.2008361816406	3	380.200395	1137.57936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.86	1	58.596	58.096	59.096	-0.26405								0	0	0	0.8837	1	22401	22401		3.9444	0	1		+		34981	15731	22239	22359	33685	33685					0.0160700105034266
TWPTRSAQF	9	Unmodified	_TWPTRSAQF_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F10843Sfs*11|1|0.22|ENSG00000181143|chr19:8938427-8938427|A/-|frameshift_variant;MUC16|p.N9430Tfs*13|1|0.14|ENSG00000181143|chr19:8948481-8948481|T/-|frameshift_variant;MUC16|p.K6604Rfs*26|1|0.27|ENSG00000181143|chr19:8956959-8956959|T/-|frameshift_variant;MUC16|p.S6614Lfs*30|1|0.04|ENSG00000181143|chr19:8956931-8956932|-/A|frameshift_variant;MUC16|p.S7713Lfs*5|1|0.45|ENSG00000181143|chr19:8953634-8953634|G/-|frameshift_variant;MUC16|p.T7968Nfs*2|1|0.41|ENSG00000181143|chr19:8952867-8952868|-/T|frameshift_variant;MUC16|p.L8270Wfs*63|1|0.04|ENSG00000181143|chr19:8951962-8951963|-/ACCA|frameshift_variant;MUC16|p.T8791Qfs*38|1|0.31|ENSG00000181143|chr19:8950403-8950403|G/-|frameshift_variant;MUC16|p.I2885Dfs*9|1|0.28|ENSG00000181143|chr19:8972486-8972487|-/C|frameshift_variant;MUC16|p.N2936Tfs*6|1|0.17|ENSG00000181143|chr19:8972332-8972332|T/-|frameshift_variant;MUC16|p.H3632Pfs*17|1|0.13|ENSG00000181143|chr19:8965875-8965876|-/G|frameshift_variant;MUC16|p.S4774Ffs*12|1|0.01|ENSG00000181143|chr19:8962451-8962452|-/AC|frameshift_variant;MUC16|p.S6098Wfs*23|1|0.17|ENSG00000181143|chr19:8958477-8958478|-/GGTGACATCTCTTGGCCAACTGACCCTGGACACATCAACC|frameshift_variant;MUC16|p.L2546Kfs*23|1|0.04|ENSG00000181143|chr19:8973503-8973504|-/CCTT|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	HCT116MG_D190212_S4	4	365.1863098144531	3	365.185691	1092.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.778	1	55.466	54.966	55.966	-0.312								0	0	0	0.76948	1	20895	20895		2.7352	0	1				34982	5624	22240	22360	33686	33686					-0.007323118423073538
TWRLDLITEFF	11	Unmodified	_TWRLDLITEFF_					0	0	0			REV__PON3|p.M195T|1|0.22|ENSG00000105852|chr7:95363974-95363974|A/G|missense_variant	REV__PON3|p.M195T|1|0.22|ENSG00000105852|chr7:95363974-95363974|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	480.92254638671875	3	480.922244	1439.7449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.97	1	52.665	52.165	53.165	-0.30483								0	0	0	0.95954	1	20037	20037		1.3296	0.63198	1		+		34983	17435	22241	22361	33687	33687					0.04261886320182384
TWSPASEP	8	Unmodified	_TWSPASEP_					0	0	0		ENST00000244769.8_1_6:16303126-16303444:-|nuORF	ENST00000244769.8_1_6:16303126-16303444:-|nuORF	ENST00000244769.8_1_6:16303126-16303444:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	874.3943481445312	1	874.394124	873.386848	1.0152	0.00088771	-0.21593	-0.0001888	0.7993	0.0006989	874.3939580342033	39.122	0.41308	39.045	38.761	39.174	-0.077835					11	7	2	0	0	0	0.19622	1	14711	14711		74.396	0	1	29435000			34984	6786	22242	22362	33688	33688					-0.054910428159928415
TWTVFPKP	8	Unmodified	_TWTVFPKP_					0	0	0			REV__MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	REV__MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	488.2705078125	2	488.268553	974.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.02	1	31.644	31.144	32.144	-0.37529								0	0	0	0.8396	1	11645	11645		19.439	1.304	1		+		34985	11132	22243	22363	33689	33689					0.03427276765467013
TYCMKVSISL	10	Unmodified	_TYCMKVSISL_					0	0	0		ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	MSMS	HCT116MG_D190212_S1	1	382.19708251953125	3	382.196211	1143.5668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.601	1	26.601	26.101	27.101	0								0	0	0	0.94107	1	9618	9618		3.5871	0.74377	1				34986	5065	22244	22364	33690	33690					0.0007617680514613312
TYDEYKKG	8	Unmodified	_TYDEYKKG_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1;ENSG00000171812|ENST00000397799|COL8A2	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-SECPEP	HCT116MG_D190212_S2	2	502.7666320800781	2	502.24019	1002.46583	0.59564	0.00029915	-0.33953	-0.00017053	0.2561	0.00012863	502.2399080752715	25.935	0.25951	25.566	25.446	25.706	-0.36914					9	4	3	0	0	0	0.28275	1	9417	9417		19.439	4.8573	1	15746000			34987	3885	22245	22365	33691	33691					-0.03530815581711977
TYDKVEDY	8	Unmodified	_TYDKVEDY_					0	0	0			REV__ENST00000566431.5_1_16:84853723-84896622:+|nuORF	REV__ENST00000566431.5_1_16:84853723-84896622:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1034.4881591796875	1	1032.45203	1031.44476	0.42834	0.00044224	-0.060155	-6.2107E-05	0.36818	0.00038013	1032.4516826324946	36.628	0.26033	36.327	36.197	36.457	-0.30113					9	4	3	0	0	0	0.60268	1	13530	13530		32.117	8.9685	1	7472500	+		34988	11182	22246	22366	33692	33692					-0.0697082568121914
TYDSGIHSGAN	11	Unmodified	_TYDSGIHSGAN_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S1	1	561.2470092773438	2	561.246535	1120.47852	0.37703	0.0002116	-0.20083	-0.00011272	0.17619	9.8889E-05	561.2465705410638	19.939	0.20919	19.939	19.809	20.018	0					5	3	2	0	0	0	0.27657	1	6957	6957		66.683	43.947	1	6610000			34989	5303	22247	22367	33693	33693					-0.07690404189452238
TYETTLEK	8	Unmodified	_TYETTLEK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S1	1	492.7477722167969	2	492.747847	983.481142	0.20858	0.00010278	0.24933	0.00012286	0.45791	0.00022564	492.7478539094666	25.171	0.31312	25.171	25.04	25.353	0					8	5	2	0	0	0	0.20876	1	9056	9056		71.922	39.617	1	10412000		+	34990	554	22248	22368	33694	33694					-0.011259487845222793
TYETTLEK	8	Unmodified	_TYETTLEK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MSMS	HCT116MG_D190212_S3	3	492.7473449707031	2	492.747847	983.481142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.36	1	25.254	24.754	25.754	-0.10618								0	0	0	0.5922	1	9050	9050		37.974	13.3	1			+	34991	554	22248	22368	33695	33695					-0.011259487845222793
TYETTLEK	8	Unmodified	_TYETTLEK_					0	0	0		ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.V457Wfs*25|1|0.2|ENSG00000163631|chr4:73417606-73417606|A/-|frameshift_variant;nc|ENSG00000163631|P02768-2|ALB	ENSG00000163631|ENST00000295897|ALB	ENSG00000163631|ENST00000295897|ALB	MULTI-MSMS	HCT116MG_D190212_S4	4	492.7480773925781	2	492.747847	983.481142	0.29983	0.00014774	0.162	7.9823E-05	0.46183	0.00022757	492.7479360342511	25.572	0.2601	25.292	25.162	25.422	-0.27958					7	4	2	0	0	0	0.29007	1	9075	9075		60.074	17.979	1	9356300		+	34992	554	22248	22368	33696	33696					-0.011259487845222793
TYHRRYLRTWF	11	Unmodified	_TYHRRYLRTWF_					0	0	0			REV__nc|ENSG00000163444|Q8IXX5-2|TMEM183A	REV__nc|ENSG00000163444|Q8IXX5-2|TMEM183A	MULTI-MSMS	HCT116MG_D190212_S3	3	533.614990234375	3	533.616148	1597.82661	0.45762	0.00024419	-1.3843	-0.0007387	-0.92672	-0.00049451	533.6154006217716	22.087	0.2602	22.088	21.938	22.198	0.00074577					10	4	3	0	0	0	0.74191	1	7761	7761		1.0136	0.6843	1	2437800	+		34993	12922	22249	22369	33697	33697					0.05161426522636248
TYKIYWTVILL	11	Unmodified	_TYKIYWTVILL_					0	0	0		TTK|p.R854Gfs*39|1|0.4|ENSG00000112742|chr6:80042180-80042180|A/-|frameshift_variant;ENST00000369798.6_1_6:80750412-80752022:+|nuORF	TTK|p.R854Gfs*39|1|0.4|ENSG00000112742|chr6:80042180-80042180|A/-|frameshift_variant	TTK|p.R854Gfs*39|1|0.4|ENSG00000112742|chr6:80042180-80042180|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	706.8231201171875	2	706.913039	1411.81152	0.76406	0.00054012	0.7312	0.00051689	1.4953	0.001057	707.4147726532168	56.32	0.87494	56.32	55.862	56.737	0					19	16	2	0	0	0	0.36231	1	21585	21585		13.042	11.849	1	5175400			34994	7415	22250	22370	33698	33698					0.12209121882096952
TYLGHDKIY	9	Unmodified	_TYLGHDKIY_					0	0	0			REV__nc|ENSG00000163864|Q96T66-3|NMNAT3	REV__nc|ENSG00000163864|Q96T66-3|NMNAT3	MULTI-MSMS	HCT116MG_D190212_S1	1	555.2830200195312	2	555.284931	1108.55531	0.4781	0.00026548	-0.53569	-0.00029746	-0.057586	-3.1977E-05	555.2845160647026	34.102	0.46978	34.102	33.867	34.337	0					19	8	3	0	0	0	0.43775	1	12733	12733		20.454	0	1	30432000	+		34995	12955	22251	22371	33699	33699					0.0053743909768400044
TYMALLGMF	9	Unmodified	_TYMALLGMF_					0	0	0			REV__ENSG00000116260|ENST00000367602|QSOX1	REV__ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	HCT116MG_D190212_S3	3	1046.505859375	1	1046.50494	1045.49766	0.50879	0.00053245	0.34029	0.00035611	0.84908	0.00088857	1046.5054136679519	54.147	0.20898	53.847	53.716	53.925	-0.29946					5	3	2	0	0	0	0.49914	1	20533	20533		16.942	2.3606	1	9995700	+		34996	11580	22252	22372	33700	33700					-0.023268624237744007
TYMVDIHPP	9	Unmodified	_TYMVDIHPP_					0	0	0			REV__NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant	REV__NCBP1|p.N708Efs*5|1|0.07|ENSG00000136937|chr9:97668950-97668951|-/GAAAATACCATTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	536.7603149414062	2	536.760235	1071.50592	0.34883	0.00018724	0.17841	9.5764E-05	0.52724	0.000283	536.7603203072632	37.301	0.53951	36.918	36.592	37.131	-0.3839					15	10	2	0	0	0	0.55919	1	13647	13647		13.508	0.97634	1	7489400	+		34997	12155	22253	22373	33701	33701					-0.026975921827897764
TYPVQEYFLE	10	Unmodified	_TYPVQEYFLE_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.L1065Cfs*20|1|0.41|ENSG00000135829|chr1:182883563-182883563|C/-|frameshift_variant;DHX9|p.L657Ffs*44|1|0.34|ENSG00000135829|chr1:182876197-182876198|-/T|frameshift_variant;ENST00000436565.2_1_13:77560670-77561054:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	HCT116MG_D190212_S4	4	644.8108520507812	2	644.808436	1287.60232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.532	1	37.148	36.648	37.648	-0.3839								0	0	0	0.92272	1	13777	13777		10.824	3.5347	1				34998	3376	22254	22374	33702	33702					-0.029977461418638995
TYRLSPNEYFF	11	Unmodified	_TYRLSPNEYFF_					0	0	0		ENSG00000204961|ENST00000532602|PCDHA9;ENSG00000204963|ENST00000525929|PCDHA7;PCDHA9|p.K764Pfs*50|1|0.23|ENSG00000204961|chr5:140850784-140850785|-/CC|frameshift_variant;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;nc|ENSG00000204963|Q9UN72-2|PCDHA7	ENSG00000204961|ENST00000532602|PCDHA9	ENSG00000204961|ENST00000532602|PCDHA9	MSMS	HCT116MG_D190212_S4	4	718.8428344726562	2	718.845884	1435.67722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.613	1	40.234	39.734	40.734	-0.37828								0	0	0	0.95196	1	14906	14906		5.2969	0.39987	1				34999	6360	22255	22375	33703	33703					-0.023195636106265738
TYRRLKKA	8	Unmodified	_TYRRLKKA_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MSMS	HCT116MG_D190212_S4	4	518.3240356445312	2	518.324725	1034.6349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.69	1	58.407	57.907	58.907	-0.28305								0	0	0	0.8837	1	22066	22066		2.3027	0.4585	1				35000	3206	22256	22376	33704	33704					0.11896550562323682
TYSVYMYMAR	10	Unmodified	_TYSVYMYMAR_					0	0	0		DNAH17|p.T3718M|1|0.32|ENSG00000187775|chr17:78449472-78449472|G/A|missense_variant	DNAH17|p.T3718M|1|0.32|ENSG00000187775|chr17:78449472-78449472|G/A|missense_variant	DNAH17|p.T3718M|1|0.32|ENSG00000187775|chr17:78449472-78449472|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	642.7910766601562	2	642.791209	1283.56787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.299	1	37.299	36.799	37.799	0								0	0	0	0.90892	1	13931	13931		13.906	0.86358	1				35001	702	22257	22377	33705	33705					-0.06257608825967509
TYTNPVHASVN	11	Unmodified	_TYTNPVHASVN_					0	0	0			REV__nc|ENSG00000086102|Q12986-3|NFX1	REV__nc|ENSG00000086102|Q12986-3|NFX1	MULTI-MSMS	HCT116MG_D190212_S2	2	401.5422058105469	3	401.531527	1201.57275	-0.064114	-2.5744E-05	-0.41599	-0.00016703	-0.48011	-0.00019278	401.8656099931674	19.724	0.20836	19.349	19.246	19.455	-0.37503					5	3	2	0	0	0	0.73893	1	6853	6853		7.4291	0.39199	1	2669200	+		35002	10929	22258	22378	33706	33706					-0.019972653673448804
TYTTSISSITI	11	Unmodified	_TYTTSISSITI_					0	0	0			REV__PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant	REV__PTPRQ|p.Q1869Afs*5|1|0.38|ENSG00000139304|chr12:80620361-80620362|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	396.2127685546875	3	396.211571	1185.61288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.137	1	34.978	34.478	35.478	-0.15834								0	0	0	0.9478	1	13096	13096		7.4771	2.1802	1		+		35003	12257	22259	22379	33707	33707					0.027502365125883443
TYYCRLIGRL	10	Unmodified	_TYYCRLIGRL_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	419.8962097167969	3	419.897264	1256.66996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.953	1	28.953	28.453	29.453	0								0	0	0	0.95648	1	10564	10564		1.5923	0	1				35004	2337	22260	22380	33708	33708					0.05189425307980855
TYYSYRYDWL	10	Unmodified	_TYYSYRYDWL_					0	0	0		ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	MSMS	HCT116MG_D190212_S4	4	715.3262329101562	2	715.324785	1428.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.556	1	20.355	19.855	20.855	-0.20133								0	0	0	0.95351	1	7044	7044		3.9444	0.66309	1				35005	5609	22261	22381	33709	33709					-0.06215539018990057
TYYVHHGYQY	10	Unmodified	_TYYVHHGYQY_					0	0	0			REV__PRDM10|p.A300V|1|0.12|ENSG00000170325|chr11:129942493-129942493|G/A|missense_variant	REV__PRDM10|p.A300V|1|0.12|ENSG00000170325|chr11:129942493-129942493|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	665.7982788085938	2	665.796195	1329.57784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.988	1	12.043	11.543	12.543	0.055045								0	0	0	0.96937	1	3708	3708		0.40072	0	1		+		35006	13291	22262	22382	33710	33710					-0.07376961504701285
TYYVHMHPDY	10	Unmodified	_TYYVHMHPDY_					0	0	0			REV__PTCH1|p.T672M|1|0.13|ENSG00000185920|chr9:95468986-95468986|G/A|missense_variant	REV__PTCH1|p.T672M|1|0.13|ENSG00000185920|chr9:95468986-95468986|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	442.5253601074219	3	442.525496	1324.55466	0.17288	7.6504E-05	-0.74969	-0.00033176	-0.57681	-0.00025525	442.52524972348635	31.45	0.26005	31.45	31.284	31.544	0					8	4	2	0	0	0	0.71349	1	11571	11571		12.175	5.1377	1	7200300	+		35007	17451	22263	22383	33711	33711					-0.09463723613680486
TYYVHMHPDY	10	Unmodified	_TYYVHMHPDY_					0	0	0			REV__PTCH1|p.T672M|1|0.13|ENSG00000185920|chr9:95468986-95468986|G/A|missense_variant	REV__PTCH1|p.T672M|1|0.13|ENSG00000185920|chr9:95468986-95468986|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	442.52557373046875	3	442.525496	1324.55466	0.38019	0.00016825	-0.67802	-0.00030004	-0.29782	-0.00013179	442.5251524933259	31.629	0.26	31.38	31.25	31.51	-0.24883					10	4	3	0	0	0	0.71349	1	11684	11684		12.175	5.1377	1	40230000	+		35008	17451	22263	22383	33712	33712					-0.09463723613680486
TYYVHMHPDY	10	Unmodified	_TYYVHMHPDY_					0	0	0			REV__PTCH1|p.T672M|1|0.13|ENSG00000185920|chr9:95468986-95468986|G/A|missense_variant	REV__PTCH1|p.T672M|1|0.13|ENSG00000185920|chr9:95468986-95468986|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	442.525496	1324.55466	0.17288	7.6504E-05	-0.74969	-0.00033176	-0.57681	-0.00025525	442.52524972348635	31.45	0.26005	31.45	31.284	31.544	0	0.034961	-5.0393E-05	NaN	12.175	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7200300	+		35009	17451	22263	22383							-0.09463723613680486
TYYVHMHPDY	10	Unmodified	_TYYVHMHPDY_					0	0	0			REV__PTCH1|p.T672M|1|0.13|ENSG00000185920|chr9:95468986-95468986|G/A|missense_variant	REV__PTCH1|p.T672M|1|0.13|ENSG00000185920|chr9:95468986-95468986|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	442.525496	1324.55466	0.38019	0.00016825	-0.67802	-0.00030004	-0.29782	-0.00013179	442.5251524933259	31.629	0.26	31.38	31.25	31.51	-0.24883	-0.034961	4.4764E-05	NaN	12.175	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40230000	+		35010	17451	22263	22383							-0.09463723613680486
USASAETP	8	Unmodified	_USASAETP_					0	0	0			REV__ENSG00000250722|ENST00000514985|SELENOP	REV__ENSG00000250722|ENST00000514985|SELENOP	MSMS	HCT116MG_D190212_S4	4	407.1296081542969	2	407.130037	812.24552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.916	1	19.723	19.223	20.223	-0.19367								0	0	0	0.8837	1	6785	6785		0	0	0		+		35011	14381	22264	22384	33713	33713					-0.16811284744221666
VAAAARCC	8	Unmodified	_VAAAARCC_					0	0	0			REV__ENST00000258111.4_1_12:70760360-70760789:+|nuORF	REV__ENST00000258111.4_1_12:70760360-70760789:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	382.6813049316406	2	382.680733	763.346914	0.070145	2.6843E-05	0.90281	0.00034549	0.97295	0.00037233	382.6810289832898	21.422	0.31164	21.204	21.062	21.374	-0.21832					7	5	2	0	0	0	0.73076	1	7417	7417		19.439	1.304	1	2640700	+		35012	14614	22265	22385	33714	33714					-0.04422584291921794
VAAAENEVH	9	Unmodified	_VAAAENEVH_					0	0	0		ENSG00000002587|ENST00000002596|HS3ST1	ENSG00000002587|ENST00000002596|HS3ST1	ENSG00000002587|ENST00000002596|HS3ST1	MULTI-SECPEP	HCT116MG_D190212_S4	4	939.4906005859375	1	939.453036	938.445759	0.80861	0.00075965	0.1263	0.00011865	0.93491	0.0008783	939.4532768354122	24.961	0.93469	24.69	24.079	25.014	-0.27168					23	17	2	0	0	0	0.23716	1	8699	8699		4.756	0	1	5778500			35013	789	22266	22386	33715	33715					-0.025925665216618654
VAAAGPEGA	9	Unmodified	_VAAAGPEGA_					0	0	0		ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	742.3736572265625	1	742.372995	741.365718	0.79972	0.00059369	0.23451	0.00017409	1.0342	0.00076779	742.3729625218342	22.089	0.3133	22.089	21.906	22.22	0					7	5	2	0	0	0	0.13706	1	7830	7830		50.855	0	1	4922400			35014	7825	22267	22387	33716	33716					-0.015310081248458118
VAAAGPEGA	9	Unmodified	_VAAAGPEGA_					0	0	0		ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	742.3731079101562	1	742.372995	741.365718	0.44861	0.00033304	0.44028	0.00032685	0.88889	0.00065989	742.373173233063	22.119	0.98963	22.12	21.729	22.719	0.00074577					31	18	3	0	0	0	0.088989	2	7833	7594;7833		60.39	0	1	41832000			35015	7825	22267	22387	33717;33718	33718					-0.015310081248458118
VAAAGPEGA	9	Unmodified	_VAAAGPEGA_					0	0	0		ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	742.3734130859375	1	742.372995	741.365718	0.8643	0.00064163	0.031806	2.3612E-05	0.8961	0.00066524	742.3728645481572	21.413	0.88284	21.195	20.802	21.685	-0.21832					33	16	3	0	0	0	0.035402	1	7353	7353		81.864	3.8797	1	51564000			35016	7825	22267	22387	33719	33719					-0.015310081248458118
VAAAGPEGA	9	Unmodified	_VAAAGPEGA_					0	0	0		ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	742.3736572265625	1	742.372995	741.365718	0.82077	0.00060932	-0.015016	-1.1147E-05	0.80575	0.00059817	742.372870511547	22.28	1.3556	22.052	21.728	23.083	-0.22777					36	25	3	0	0	0	0.088989	1	7811	7811		60.39	0	1	32036000			35017	7825	22267	22387	33720	33720					-0.015310081248458118
VAADVRRSSWA	11	Unmodified	_VAADVRRSSWA_					0	0	0			REV__ENST00000360864.8_1_20:62563619-62563754:+|nuORF	REV__ENST00000360864.8_1_20:62563619-62563754:+|nuORF	MSMS	HCT116MG_D190212_S3	3	406.55133056640625	3	406.551033	1216.63127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.841	1	12.906	12.406	13.406	0.06459								0	0	0	0.95954	1	4034	4034		0.45452	0	1		+		35018	15086	22268	22388	33721	33721					0.03161835997821072
VAAESKKPADV	11	Unmodified	_VAAESKKPADV_					0	0	0			REV__nc|ENSG00000010219|Q9NR20-5|DYRK4	REV__nc|ENSG00000010219|Q9NR20-5|DYRK4	MSMS	HCT116MG_D190212_S2	2	557.8090209960938	2	557.808771	1113.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.096	1	36.982	36.482	37.482	-0.11478								0	0	0	0.80071	1	13894	13894		32.786	3.7041	1		+		35019	10512	22269	22389	33722	33722					0.050730932978467536
VAAGPPSG	8	Unmodified	_VAAGPPSG_					0	0	0			REV__ENSG00000177508|ENST00000329734|IRX3	REV__ENSG00000177508|ENST00000329734|IRX3	MULTI-MSMS	HCT116MG_D190212_S2	2	655.341552734375	1	655.340966	654.33369	0.63226	0.00041435	0.061615	4.0379E-05	0.69388	0.00045473	655.3408270844875	25.203	0.9891	24.828	24.087	25.076	-0.37521					22	18	2	0	0	0	0.21411	1	9024	9024		70.865	0	1	12412000	+		35020	13575	22270	22390	33723	33723					-0.007303758079956424
VAAGPPSG	8	Unmodified	_VAAGPPSG_					0	0	0			REV__ENSG00000177508|ENST00000329734|IRX3	REV__ENSG00000177508|ENST00000329734|IRX3	MULTI-MSMS	HCT116MG_D190212_S3	3	655.3414916992188	1	655.340966	654.33369	0.72814	0.00047718	-0.030746	-2.0149E-05	0.6974	0.00045703	655.3408091770594	24.931	1.2494	24.842	24.024	25.274	-0.088634					39	23	2	0	0	0	0.29313	1	8959	8959		59.795	0	1	15749000	+		35021	13575	22270	22390	33724	33724					-0.007303758079956424
VAAGPPSG	8	Unmodified	_VAAGPPSG_					0	0	0			REV__ENSG00000177508|ENST00000329734|IRX3	REV__ENSG00000177508|ENST00000329734|IRX3	MULTI-MSMS	HCT116MG_D190212_S4	4	655.3411254882812	1	655.340966	654.33369	0.75295	0.00049344	0.018929	1.2405E-05	0.77188	0.00050584	655.3408286199368	25.073	0.98685	24.793	24.123	25.11	-0.27958					38	18	3	0	0	0	0.21411	1	8721	8721		70.865	0	1	13675000	+		35022	13575	22270	22390	33725	33725					-0.007303758079956424
VAAGSAQQQGP	11	Unmodified	_VAAGSAQQQGP_					0	0	0			REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant	REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	507.25445556640625	2	507.254163	1012.49377	0.21905	0.00011111	0.21513	0.00010912	0.43417	0.00022024	507.7557771745549	19.9	0.57301	19.948	19.582	20.155	0.048107					17	10	2	0	0	0	0.68267	1	6850	6850		26.268	3.5319	1	3061200	+		35023	13227	22271	22391	33726	33726					-0.011974926016137033
VAAHAGAY	8	Unmodified	_VAAHAGAY_					0	0	0		ENSG00000185610|ENST00000332700|DBX2	ENSG00000185610|ENST00000332700|DBX2	ENSG00000185610|ENST00000332700|DBX2	MSMS	HCT116MG_D190212_S2	2	380.19268798828125	2	380.192845	758.371138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.625	1	22.24	21.74	22.74	-0.3852								0	0	0	0.67698	1	8024	8024		32.454	4.2804	1				35024	5836	22272	22392	33727	33727					-0.017712845423830004
VAAILLLVIII	11	Unmodified	_VAAILLLVIII_					0	0	0		nc|ENSG00000117533|O75379-2|VAMP4;ENSG00000117533|ENST00000236192|VAMP4	nc|ENSG00000117533|O75379-2|VAMP4	nc|ENSG00000117533|O75379-2|VAMP4	MSMS	HCT116MG_D190212_S3	3	575.91162109375	2	575.91231	1149.81007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.07	1	14.144	13.644	14.644	0.074899								0	0	0	0.96141	1	4504	4504		0.35063	0	1				35025	2580	22273	22393	33728	33728					0.24115532583982713
VAAKEPVLLEP	11	Unmodified	_VAAKEPVLLEP_					0	0	0			REV__KIF26A|p.P1147Lfs*101|2|0.24|ENSG00000066735|chr14:104176223-104176223|C/-|frameshift_variant;REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MSMS	HCT116MG_D190212_S3	3	583.3455200195312	2	583.344989	1164.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.924	1	48.608	48.108	49.108	-0.31596								0	0	0	0.94284	1	18412	18412		10.074	3.3508	1		+		35026	16929;10722	22274	22394	33729	33729					0.09967427371429949
VAAQLQLDSLN	11	Unmodified	_VAAQLQLDSLN_					0	0	0			REV__TRAF1|p.N275Kfs*8|1|0.26|ENSG00000056558|chr9:120911394-120911395|-/T|frameshift_variant	REV__TRAF1|p.N275Kfs*8|1|0.26|ENSG00000056558|chr9:120911394-120911395|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	586.3197631835938	2	586.319502	1170.62445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.105	1	29.105	28.605	29.605	0								0	0	0	0.92235	1	10625	10625		17.113	2.2746	1		+		35027	10653	22275	22395	33730	33730					0.04596478326561737
VAATPGAP	8	Unmodified	_VAATPGAP_					0	0	0		ENST00000285383.6_1_7:6895426-6899450:-|nuORF	ENST00000285383.6_1_7:6895426-6899450:-|nuORF	ENST00000285383.6_1_7:6895426-6899450:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	683.372314453125	1	683.372266	682.36499	0.12346	8.4366E-05	0.43504	0.00029729	0.55849	0.00038166	683.37233118213	30.235	0.87572	29.951	29.667	30.543	-0.28453					26	16	2	0	0	0	0.083541	1	11114	11114		98.807	20.362	1	28189000			35028	6947	22276	22396	33731	33731					0.011101972260917137
VAATPGAP	8	Unmodified	_VAATPGAP_					0	0	0		ENST00000285383.6_1_7:6895426-6899450:-|nuORF	ENST00000285383.6_1_7:6895426-6899450:-|nuORF	ENST00000285383.6_1_7:6895426-6899450:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	683.3724975585938	1	683.372266	682.36499	0.65161	0.00044529	-0.038355	-2.621E-05	0.61325	0.00041908	683.3719634683043	30.46	1.5958	30.103	29.285	30.881	-0.3571					82	55	3	0	0	0	0.32897	1	10929	10929		56.541	0	1	36924000			35029	6947	22276	22396	33732	33732					0.011101972260917137
VAAVAEYSR	9	Unmodified	_VAAVAEYSR_					0	0	0			REV__RBM4B|p.A235V|1|0.37|ENSG00000173914|chr11:66669000-66669000|G/A|missense_variant	REV__RBM4B|p.A235V|1|0.37|ENSG00000173914|chr11:66669000-66669000|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	483.255126953125	2	483.256174	964.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.74	1	34.354	33.854	34.854	-0.38595								0	0	0	0.76641	1	12697	12697		13.508	0.97634	1		+		35030	17466	22277	22397	33733	33733					0.014125968920893683
VACHPGYG	8	Unmodified	_VACHPGYG_					0	0	0		nc|ENSG00000116785|Q02985-2|CFHR3;ENSG00000116785|ENST00000367425|CFHR3	nc|ENSG00000116785|Q02985-2|CFHR3	nc|ENSG00000116785|Q02985-2|CFHR3	MSMS	HCT116MG_D190212_S3	3	402.17950439453125	2	402.178881	802.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9866	1	4.0154	3.5154	4.5154	0.028732								0	0	0	0.8837	1	1202	1202		0.79363	0	1				35031	2538	22278	22398	33734	33734					-0.0658693079412842
VACRGGPI	8	Unmodified	_VACRGGPI_					0	0	0			REV__ENST00000424684.2_1_1:149288589-149288793:+|nuORF	REV__ENST00000424684.2_1_1:149288589-149288793:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	386.71002197265625	2	386.710348	771.406143	0.018072	6.9886E-06	-0.02305	-8.9138E-06	-0.0049782	-1.9251E-06	386.7102255845882	26.534	0.93737	26.385	26.151	27.088	-0.14924					32	17	2	0	0	0	0.5791	1	9514	9514		34.187	0	1	5940400	+		35032	15538	22279	22399	33735	33735					0.011296349939129868
VADAAMEQYIL	11	Unmodified	_VADAAMEQYIL_					0	0	0		nc|ENSG00000169242|P20827-2|EFNA1;ENST00000474413.5_1_1:155102304-155106540:+|nuORF;ENST00000497282.1_1_1:155103761-155106540:+|nuORF;ENSG00000169242|ENST00000368407|EFNA1;ENST00000469878.5_1_1:155100369-155106166:+|nuORF	nc|ENSG00000169242|P20827-2|EFNA1	nc|ENSG00000169242|P20827-2|EFNA1	MSMS	HCT116MG_D190212_S1	1	612.302734375	2	612.302464	1222.59037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.658	1	42.658	42.158	43.158	0								0	0	0	0.93717	1	16096	16096		13.042	2.9685	1				35033	5061	22280	22400	33736	33736					-0.012016861566962689
VADAPRTEPAP	11	Unmodified	_VADAPRTEPAP_					0	0	0			REV__ENST00000495067.1_1_7:87505864-87507564:+|nuORF	REV__ENST00000495067.1_1_7:87505864-87507564:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	562.291015625	2	562.290745	1122.56694	0.3232	0.00018173	-1.8961	-0.0010661	-1.5729	-0.00088442	562.2895303130637	19.154	0.5215	18.785	18.418	18.94	-0.3695					15	9	2	0	0	0	0.69401	1	6675	6675		24.021	0.23079	1	2924600	+		35034	16080	22281	22401	33737	33737					0.010556361209864917
VADAVDYR	8	Unmodified	_VADAVDYR_					0	0	0			REV__nc|ENSG00000172752|A8TX70|COL6A5	REV__nc|ENSG00000172752|A8TX70|COL6A5	MSMS	HCT116MG_D190212_S3	3	454.7270202636719	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.025	1	23.964	23.464	24.464	-0.061449								0	0	0	0.36239	1	8512	8512		50.855	4.8341	1		+		35035	13401	22282	22402	33738	33738					-0.01747665033337853
VADAVDYR	8	Unmodified	_VADAVDYR_					0	0	0			REV__nc|ENSG00000172752|A8TX70|COL6A5	REV__nc|ENSG00000172752|A8TX70|COL6A5	MSMS	HCT116MG_D190212_S4	4	454.72735595703125	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.226	1	23.968	23.468	24.468	-0.25816								0	0	0	0.31385	1	8524	8524		53.576	5.2297	1		+		35036	13401	22282	22402	33739	33739					-0.01747665033337853
VADEFLVLN	9	Unmodified	_VADEFLVLN_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	HCT116MG_D190212_S1	1	1019.54150390625	1	1019.54079	1018.53351	0.80771	0.00082349	-0.062958	-6.4188E-05	0.74475	0.0007593	1019.5407987073313	57.282	0.15596	57.282	57.204	57.36	0					4	2	2	0	0	0	0.065014	1	22063	22063		67.344	0	1	25959000	+		35037	13934	22283	22403	33740	33740					0.024986343490809304
VADHEDLLQQ	10	Unmodified	_VADHEDLLQQ_					0	0	0			REV__ENSG00000139352|ENST00000266744|ASCL1	REV__ENSG00000139352|ENST00000266744|ASCL1	MULTI-MSMS	HCT116MG_D190212_S3	3	584.2858276367188	2	584.28566	1166.55677	0.39595	0.00023135	-0.10966	-6.4072E-05	0.28629	0.00016728	584.285544231568	28.258	0.36528	28.052	27.968	28.333	-0.20593					11	6	3	0	0	0	0.48679	1	10241	10241		36.127	6.2864	1	5955500	+		35038	12260	22284	22404	33741	33741					-0.019849716042244836
VADHEDLLQQ	10	Unmodified	_VADHEDLLQQ_					0	0	0			REV__ENSG00000139352|ENST00000266744|ASCL1	REV__ENSG00000139352|ENST00000266744|ASCL1	MULTI-MSMS	HCT116MG_D190212_S4	4	584.285400390625	2	584.28566	1166.55677	0.30692	0.00017933	-0.48804	-0.00028515	-0.18111	-0.00010582	584.2852163750795	28.369	0.41613	28.038	27.856	28.272	-0.33138					11	7	2	0	0	0	0.58749	1	10209	10209		29.082	0	1	4189900	+		35039	12260	22284	22404	33742	33742					-0.019849716042244836
VADHEDLLQQ	10	Unmodified	_VADHEDLLQQ_					0	0	0			REV__ENSG00000139352|ENST00000266744|ASCL1	REV__ENSG00000139352|ENST00000266744|ASCL1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	584.28566	1166.55677	0.30692	0.00017933	-0.48804	-0.00028515	-0.18111	-0.00010582	584.2852163750795	28.369	0.41613	28.038	27.856	28.272	-0.33138	-0.0069721	-0.00030876	NaN	36.127	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4189900	+		35040	12260	22284	22404							-0.019849716042244836
VADKFTEL	8	Unmodified	_VADKFTEL_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	HCT116MG_D190212_S2	2	461.7475280761719	2	461.74765	921.480748	0.12426	5.7376E-05	0.47845	0.00022092	0.60271	0.0002783	461.74767918100036	39.58	0.25134	39.502	39.379	39.631	-0.077835					7	4	2	0	0	0	0.20346	1	14925	14925		72.968	9.4051	1	33163000			35041	2013	22285	22405	33743	33743					0.01686676286283273
VADKFTEL	8	Unmodified	_VADKFTEL_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MSMS	HCT116MG_D190212_S3	3	461.7477111816406	2	461.74765	921.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.868	1	39.567	39.067	40.067	-0.30137								0	0	0	0.12223	1	14786	14786		79.596	16.033	1				35042	2013	22285	22405	33744	33744					0.01686676286283273
VADKFTEL	8	Unmodified	_VADKFTEL_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MSMS	HCT116MG_D190212_S4	4	461.7474365234375	2	461.74765	921.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.015	1	39.635	39.135	40.135	-0.37936								0	0	0	0.14782	1	14667	14667		74.929	13.572	1				35043	2013	22285	22405	33745	33745					0.01686676286283273
VADKHELL	8	Unmodified	_VADKHELL_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MSMS	HCT116MG_D190212_S2	2	462.7612609863281	2	462.761092	923.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.581	1	29.28	28.78	29.78	-0.30095								0	0	0	0.16719	1	10841	10841		71.922	11.533	1				35044	3997	22286	22406	33746	33746					0.04281784897466423
VADKPQTEF	9	Unmodified	_VADKPQTEF_					0	0	0		nc|ENSG00000177238|Q6ZMU5-2|TRIM72;TRIM72|p.P257Hfs*28|1|0.49|ENSG00000177238|chr16:31222852-31222852|C/-|frameshift_variant;ENSG00000177238|ENST00000322122|TRIM72	nc|ENSG00000177238|Q6ZMU5-2|TRIM72	nc|ENSG00000177238|Q6ZMU5-2|TRIM72	MULTI-MSMS	HCT116MG_D190212_S3	3	517.7608642578125	2	517.761289	1033.50803	0.38567	0.00019969	-1.5489	-0.00080195	-1.1632	-0.00060227	517.7604850604147	29.45	0.26071	29.213	29.083	29.344	-0.23655					6	4	2	0	0	0	0.051033	1	10734	10734		74.2	30.341	1	3707400			35045	5451	22287	22407	33747	33747					-0.007388401733351202
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(110)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	546.281005859375	2	546.281334	1090.54812	0.67926	0.00037107	-0.22942	-0.00012533	0.44983	0.00024574	546.2812239024408	30.843	0.5206	30.843	30.659	31.18	0					24	9	4	0	0	0	0.0094709	1	11309	11309		114.65	74.692	1	98902000			35046	2724	22288	22408	33748	33748		56			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(61)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	364.5227966308594	3	364.523315	1090.54812	0.068766	2.5067E-05	-0.37589	-0.00013702	-0.30712	-0.00011195	364.523117964239	30.841	0.36427	30.841	30.659	31.023	0					15	6	3	0	0	0	0.085458	1	11312	11312		61.09	27.645	1	68129000			35047	2724	22288	22408	33749	33749		56			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(100)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	546.281494140625	2	546.281334	1090.54812	0.51427	0.00028094	0.0085718	4.6826E-06	0.52285	0.00028562	546.2812829191278	31.112	0.56866	30.845	30.663	31.232	-0.26704					27	10	4	0	0	0	0.01405	1	11465	11465		103.35	61.514	1	366280000			35048	2724	22288	22408	33750	33750		56			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(61)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	364.5232238769531	3	364.523315	1090.54812	-0.15059	-5.4894E-05	-0.10577	-3.8557E-05	-0.25636	-9.345E-05	364.52325932300187	31.125	0.36197	30.858	30.663	31.025	-0.26704					19	6	4	0	0	0	0.085458	1	11468	11468		61.09	38.432	1	106820000			35049	2724	22288	22408	33751	33751		56			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(110)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1091.5556640625	1	1091.55539	1090.54812	0.6472	0.00070646	-0.24529	-0.00026775	0.40191	0.00043871	1091.5553091272918	31.129	0.25804	30.862	30.716	30.974	-0.26704					8	4	2	0	0	0	0.012596	1	11489	11489		106.94	66.983	1	18853000			35050	2724	22288	22408	33752	33752		56			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(96)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	546.2816772460938	2	546.281334	1090.54812	0.36722	0.0002006	0.1349	7.3692E-05	0.50211	0.00027429	546.2815150041738	31.272	0.36573	31.011	30.865	31.231	-0.26071					8	6	2	0	0	0	0.0201	1	11419	11419		96.367	70.967	1	12765000			35051	2724	22288	22408	33753	33753		56			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(64)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	546.2813110351562	2	546.281334	1090.54812	0.45204	0.00024694	-0.34255	-0.00018713	0.1095	5.9815E-05	546.2809609655831	31.42	0.25981	31.049	30.868	31.127	-0.37026					7	4	2	0	0	0	0.071914	1	11421	11421		63.961	44.704	1	2264400			35052	2724	22288	22408	33754	33754		56			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_					0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1091.55539	1090.54812	0.75648	0.00082574	0.50313	0.0005492	1.2596	0.0013749	1091.5561926684916	30.879	0.15605	30.879	30.763	30.919	0	0.0081475	0.00061321	NaN	106.94	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2289800			35053	2724	22288	22408				56			0.006463832255803936
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	538.2839965820312	2	538.283877	1074.5532	0.57285	0.00030836	-0.12288	-6.6144E-05	0.44997	0.00024221	538.2838539111153	35.967	0.63164	35.967	35.733	36.365	0					34	11	5	0	0	0	0.0062667	2	13382	13382;13503		126.57	71.792	1	739080000			35054	2724	22288	22409	33755;33756	33755					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	359.19146728515625	3	359.191677	1074.5532	0.022258	7.9948E-06	0.12007	4.3127E-05	0.14232	5.1121E-05	359.19163056928363	35.968	0.52743	35.968	35.785	36.312	0					28	9	5	0	0	0	0.10244	1	13385	13385		53.317	36.751	1	376800000			35055	2724	22288	22409	33757	33757					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1075.5606689453125	1	1075.56048	1074.5532	0.78368	0.00084289	-0.21732	-0.00023374	0.56635	0.00060915	1075.560341842864	35.967	0.31278	35.967	35.837	36.15	0					7	5	2	0	0	0	0.0080847	1	13404	13404		118.07	70.32	1	20055000			35056	2724	22288	22409	33758	33758					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	538.2838745117188	2	538.283877	1074.5532	0.84163	0.00045304	-0.18578	-0.0001	0.65585	0.00035303	538.2838187851964	36.018	0.87951	35.89	35.658	36.537	-0.12799					45	16	5	0	0	0	0.0094709	1	13439	13439		114.65	70.791	1	2113199999.9999998			35057	2724	22288	22409	33759	33759					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	359.1918029785156	3	359.191677	1074.5532	0.1967	7.0653E-05	0.0020217	7.2619E-07	0.19872	7.138E-05	359.1916597604641	36.018	0.51701	35.89	35.709	36.226	-0.12799					31	9	4	0	0	0	0.14362	1	13449	13449		46.022	30.774	1	885980000			35058	2724	22288	22409	33760	33760					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1075.560791015625	1	1075.56048	1074.5532	0.83762	0.00090091	-0.28588	-0.00030748	0.55174	0.00059343	1075.5603013184482	36.019	0.3619	35.891	35.761	36.122	-0.12799					18	6	4	0	0	0	0.0080847	1	13456	13456		118.07	74.21	1	148260000			35059	2724	22288	22409	33761	33761					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2838745117188	2	538.283877	1074.5532	0.11515	6.1981E-05	0.070517	3.7958E-05	0.18566	9.9939E-05	538.2839852846514	36.262	0.52039	35.962	35.781	36.302	-0.30042					22	9	4	0	0	0	0.012596	1	13379	13379		106.94	70.813	1	64875000			35060	2724	22288	22409	33762	33762					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	359.1913757324219	3	359.191677	1074.5532	-0.44576	-0.00016011	0.28896	0.00010379	-0.1568	-5.6322E-05	359.19167958682914	36.26	0.31194	35.96	35.781	36.093	-0.30042					12	5	3	0	0	0	0.17622	1	13388	13388		34.222	19.816	1	25915000			35061	2724	22288	22409	33763	33763					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	538.284912109375	2	538.283877	1074.5532	0.54862	0.00029531	1.0597	0.00057044	1.6084	0.00086576	538.2847346838298	36.382	0.61663	35.996	35.818	36.434	-0.38558					14	11	2	0	0	0	0.22946	1	13323	13323		38.176	13.502	1	6144600			35062	2724	22288	22409	33764	33764					0.018906870881892246
VADLVENSY	9	Unmodified	_VADLVENSY_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S1	1	1009.483642578125	1	1009.48367	1008.47639	-0.00097701	-9.8628E-07	0.17985	0.00018156	0.17887	0.00018057	1009.4838553204689	38.149	0.26018	38.149	38.019	38.279	0					10	4	3	0	0	0	0.020353	1	14280	14280		96.111	7.2073	1	23385000			35063	2480	22289	22410	33765	33765					-0.027508329272791343
VADMTGKEWL	10	Unmodified	_VADMTGKEWL_					0	0	0			REV__ENST00000506770.5_1_4:3949295-3954861:-|nuORF	REV__ENST00000506770.5_1_4:3949295-3954861:-|nuORF	MSMS	HCT116MG_D190212_S2	2	575.2904663085938	2	575.284074	1148.5536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.547	1	22.162	21.662	22.662	-0.3852								0	0	0	0.90892	1	7993	7993		13.906	0.86358	1		+		35064	14850	22290	22411	33766	33766					-0.014739379825869037
VADPDNPLVL	10	Unmodified	_VADPDNPLVL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S2	2	1052.5615234375	1	1052.56225	1051.55498	0.848	0.00089257	-0.13961	-0.00014694	0.70839	0.00074562	1052.5620092932395	51.993	0.30918	51.81	51.629	51.938	-0.18369					10	5	2	0	0	0	0.047039	1	19971	19971		89.401	35.568	1	21103000			35065	6563	22291	22412	33767	33767					0.03126019377805278
VADPDNPLVL	10	Unmodified	_VADPDNPLVL_					0	0	0		nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-3|DDOST	nc|ENSG00000244038|P39656-3|DDOST	MULTI-MSMS	HCT116MG_D190212_S3	3	1052.5623779296875	1	1052.56225	1051.55498	0.62206	0.00065475	-0.59725	-0.00062864	0.02481	2.6114E-05	1052.5616646474073	52.214	0.25425	51.905	51.781	52.035	-0.30927					7	4	2	0	0	0	0.072018	1	19763	19763		79.596	39.647	1	4221100			35066	6563	22291	22412	33768	33768					0.03126019377805278
VADQDLWNQ	9	Unmodified	_VADQDLWNQ_					0	0	0			REV__ENST00000472710.2_1_1:46744539-46744996:-|nuORF	REV__ENST00000472710.2_1_1:46744539-46744996:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	544.754150390625	2	544.753995	1087.49344	0.47256	0.00025743	-0.22921	-0.00012487	0.24334	0.00013256	544.7537947886508	29.876	1.0916	29.519	28.817	29.909	-0.3571					39	20	3	0	0	0	0.34272	1	10921	10921		26.268	1.2772	1	15204000	+		35067	11981	22292	22413	33769	33769					-0.046809123215098225
VADREWRR	8	Unmodified	_VADREWRR_					0	0	0		ENST00000475911.2_1_1:159846344-159850487:-|nuORF;ENST00000476696.5_1_1:159842277-159846563:-|nuORF;nc|ENSG00000213085|Q9UL16-2|CFAP45;ENSG00000213085|ENST00000368099|CFAP45	ENST00000475911.2_1_1:159846344-159850487:-|nuORF	ENST00000475911.2_1_1:159846344-159850487:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	363.710693359375	3	363.196701	1086.56827	0.0065025	2.3617E-06	-1.5714	-0.00057074	-1.5649	-0.00056838	363.1959957647692	20.704	0.15585	20.5	20.401	20.557	-0.20464					4	2	2	0	0	0	0.32122	1	7100	7100		5.7319	2.8886	1	1082200			35068	6407	22293	22414	33770	33770					0.028453150003997507
VADRTTFGE	9	Unmodified	_VADRTTFGE_					0	0	0		ENSG00000165695|ENST00000298545|AK8;ENST00000476719.1_1_9:135601077-135753754:-|nuORF;nc|ENSG00000165695|Q96MA6-2|AK8	ENSG00000165695|ENST00000298545|AK8	ENSG00000165695|ENST00000298545|AK8	MULTI-SECPEP	HCT116MG_D190212_S3	3	498.75360107421875	2	498.243264	994.471974	0.50389	0.00025106	0.23622	0.00011769	0.74011	0.00036875	498.24327787323	25.902	0.72928	25.774	25.286	26.016	-0.12795					18	13	2	0	0	0	0.12926	1	9197	9197		37.974	3.7523	1	3594200			35069	4793	22294	22415	33771	33771					-0.02548297350199391
VADRTTFGE	9	Unmodified	_VADRTTFGE_					0	0	0		ENSG00000165695|ENST00000298545|AK8;ENST00000476719.1_1_9:135601077-135753754:-|nuORF;nc|ENSG00000165695|Q96MA6-2|AK8	ENSG00000165695|ENST00000298545|AK8	ENSG00000165695|ENST00000298545|AK8	MULTI-MSMS	HCT116MG_D190212_S4	4	498.2445373535156	2	498.243264	994.471974	0.49057	0.00024443	0.38248	0.00019057	0.87305	0.00043499	498.2435385399356	26.059	0.78066	25.769	25.204	25.984	-0.29023					21	14	2	0	0	0	0.37539	1	9328	9328		24.021	3.5669	1	4270600			35070	4793	22294	22415	33772	33772					-0.02548297350199391
VAEAEAVAA	9	Unmodified	_VAEAEAVAA_					0	0	0		TERF1|p.L86Afs*29|1|0.3|ENSG00000147601|chr8:73009141-73009144|TCTT/-|frameshift_variant;nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1	TERF1|p.L86Afs*29|1|0.3|ENSG00000147601|chr8:73009141-73009144|TCTT/-|frameshift_variant	TERF1|p.L86Afs*29|1|0.3|ENSG00000147601|chr8:73009141-73009144|TCTT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	831.0535888671875	1	830.425424	829.418148	0.771	0.00064026	0.60835	0.00050519	1.3794	0.0011454	830.4258082644764	28.808	0.25415	28.492	28.352	28.606	-0.31613					7	4	2	0	0	0	0.065014	1	10497	10497		67.344	3.1075	1	16037000			35071	3993	22295	22416	33773	33773					-0.00338469781911499
VAEEDEDD	8	Unmodified	_VAEEDEDD_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;ENST00000374089.5_1_1:27426800-27429818:-|nuORF	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	MSMS	HCT116MG_D190212_S3	3	461.0544128417969	2	461.169627	920.324701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.664	1	12.727	12.227	13.227	0.06246								0	0	0	0.8837	1	3967	3967		0.79363	0	1				35072	1536	22296	22417	33774	33774					-0.13864858745660058
VAEGLTLGAG	10	Unmodified	_VAEGLTLGAG_					0	0	0		ENST00000579248.5_2_18:47017953-47018809:-|nuORF	ENST00000579248.5_2_18:47017953-47018809:-|nuORF	ENST00000579248.5_2_18:47017953-47018809:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	444.2456359863281	2	444.245275	886.475997	0.3028	0.00013452	0.039115	1.7377E-05	0.34192	0.00015189	444.2452027168243	48.409	0.31234	48.093	47.932	48.244	-0.31596					8	5	2	0	0	0	0.77749	1	18224	18224		13.906	0	1	3757900			35073	8947	22297	22418	33775	33775					0.02821792143527091
VAEGQDNA	8	Unmodified	_VAEGQDNA_					0	0	0			REV__ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant	REV__ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	402.179931640625	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.842	1	11.897	11.397	12.397	0.055045								0	0	0	0.8837	1	3653	3653		0.79363	0	1		+		35074	11251	22298	22419	33776	33776					-0.06336803855481321
VAEGQDNA	8	Unmodified	_VAEGQDNA_					0	0	0			REV__ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant	REV__ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	402.1798095703125	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.204	1	13.274	12.774	13.774	0.069158								0	0	0	0.8837	1	4173	4173		0.79363	0	1		+		35075	11251	22298	22419	33777	33777					-0.06336803855481321
VAEGQDNA	8	Unmodified	_VAEGQDNA_					0	0	0			REV__ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant	REV__ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	402.1793212890625	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.556	1	12.387	11.887	12.887	-0.16903								0	0	0	0.8837	1	3905	3905		0.79363	0	1		+		35076	11251	22298	22419	33778	33778					-0.06336803855481321
VAEGQDNA	8	Unmodified	_VAEGQDNA_					0	0	0			REV__ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant	REV__ICAM5|p.P756Lfs*12|1|0.13|ENSG00000105376|chr19:10295378-10295378|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	402.1795349121094	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.128	1	12.963	12.463	13.463	-0.16496								0	0	0	0.8837	1	4106	4106		0.79363	0	1		+		35077	11251	22298	22419	33779	33779					-0.06336803855481321
VAEGVLMTSL	10	Unmodified	_VAEGVLMTSL_					0	0	0		ENST00000416880.5_1_3:42610473-42623377:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1019.6136474609375	1	1019.54416	1018.53688	0.93194	0.00095016	0.76041	0.00077527	1.6924	0.0017254	1019.5445498483507	55.427	0.20442	55.427	55.298	55.503	0					5	3	2	0	0	0	0.13038	1	21299	21299		68.081	6.7232	1	27967000			35078	7760	22299	22420	33780	33780					0.028355611314509588
VAEGVLMTSL	10	Unmodified	_VAEGVLMTSL_					0	0	0		ENST00000416880.5_1_3:42610473-42623377:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1020.5362548828125	1	1019.54416	1018.53688	0.8169	0.00083287	0.21631	0.00022054	1.0332	0.0010534	1019.5440415701232	55.643	0.20733	55.457	55.327	55.535	-0.18565					6	3	2	0	0	0	0.34998	1	21443	21443		46.021	9.8939	1	75562000			35079	7760	22299	22420	33781	33781					0.028355611314509588
VAELDALQ	8	Unmodified	_VAELDALQ_					0	0	0			REV__ENSG00000050555|ENST00000361069|LAMC3	REV__ENSG00000050555|ENST00000361069|LAMC3	MULTI-MSMS	HCT116MG_D190212_S2	2	859.3257446289062	1	858.456724	857.449448	0.91354	0.00078423	-0.17534	-0.00015052	0.7382	0.00063371	858.4563606274874	47.213	0.46469	47.091	46.871	47.336	-0.12175					17	8	3	0	0	0	0.14246	2	17985	17985;17996		85.357	0	1	72030000	+		35080	10620	22300	22421	33782;33783	33782					0.015021032521872257
VAELDALQ	8	Unmodified	_VAELDALQ_					0	0	0			REV__ENSG00000050555|ENST00000361069|LAMC3	REV__ENSG00000050555|ENST00000361069|LAMC3	MULTI-MSMS	HCT116MG_D190212_S4	4	858.4575805664062	1	858.456724	857.449448	0.84191	0.00072274	-0.091547	-7.8589E-05	0.75036	0.00064415	858.4563338567699	47.482	0.31149	47.112	46.944	47.255	-0.37038					26	16	2	0	0	0	0.09113	1	17547	17547		97.075	0	1	23175000	+		35081	10620	22300	22421	33784	33784					0.015021032521872257
VAERLAPV	8	Unmodified	_VAERLAPV_					0	0	0			REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	MSMS	HCT116MG_D190212_S1	1	427.7578430175781	2	427.758352	853.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.168	1	32.168	31.668	32.668	0								0	0	0	0.31385	1	11861	11861		53.576	0	1		+		35082	16404	22301	22422	33785	33785					0.06954106105649771
VAERPVSY	8	Unmodified	_VAERPVSY_					0	0	0		nc|ENSG00000138311|Q70YC5-3|ZNF365;ZNF365|p.K208Sfs*11|1|0.19|ENSG00000138311|chr10:62376812-62376812|A/-|frameshift_variant;nc|ENSG00000138311|Q70YC5-2|ZNF365;ZNF365|p.K399Sfs*6|3|0.2|ENSG00000138311|chr10:62399754-62399754|A/-|frameshift_variant;ENSG00000138311|ENST00000395254|ZNF365;nc|ENSG00000138311|Q70YC5-4|ZNF365	nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-3|ZNF365	MULTI-SECPEP	HCT116MG_D190212_S2	2	460.2662658691406	2	460.745442	919.476331	0.031213	1.4381E-05	0.71302	0.00032852	0.74423	0.0003429	460.7455767189033	30.801	0.25916	30.534	30.353	30.612	-0.26704					7	4	2	0	0	0	0.20053	1	11342	11342		58.679	16.584	1	18156000			35083	9473	22302	22423	33786	33786					0.013372118633810715
VAERPVSY	8	Unmodified	_VAERPVSY_					0	0	0		nc|ENSG00000138311|Q70YC5-3|ZNF365;ZNF365|p.K208Sfs*11|1|0.19|ENSG00000138311|chr10:62376812-62376812|A/-|frameshift_variant;nc|ENSG00000138311|Q70YC5-2|ZNF365;ZNF365|p.K399Sfs*6|3|0.2|ENSG00000138311|chr10:62399754-62399754|A/-|frameshift_variant;ENSG00000138311|ENST00000395254|ZNF365;nc|ENSG00000138311|Q70YC5-4|ZNF365	nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-3|ZNF365	MULTI-MATCH	HCT116MG_D190212_S4	4		2	460.745442	919.476331	0.040161	1.8504E-05	1.0564	0.00048672	1.0965	0.00050522	460.7457505371599	31.025	0.20752	30.66	30.513	30.72	-0.36416	0.063164	0.00014688	NaN	58.679	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2111000			35084	9473	22302	22423							0.013372118633810715
VAERTRGL	8	Unmodified	_VAERTRGL_					0	0	0			REV__ENST00000489293.5_1_7:116770554-116838385:+|nuORF	REV__ENST00000489293.5_1_7:116770554-116838385:+|nuORF	MSMS	HCT116MG_D190212_S1	1	451.2649230957031	2	451.264333	900.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.974	1	28.974	28.474	29.474	0								0	0	0	0.8837	1	10573	10573		6.3541	0	1		+		35085	10469	22303	22424	33787	33787					0.05987722848863086
VAESAVAG	8	Unmodified	_VAESAVAG_					0	0	0		ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2	ENST00000563711.5_1_16:21973998-21987565:+|nuORF	ENST00000563711.5_1_16:21973998-21987565:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	703.3623046875	1	703.362096	702.354819	1.054	0.00074138	0.081663	5.7439E-05	1.1357	0.00079882	703.3619116830437	27.253	0.36475	26.9	26.713	27.077	-0.35254					13	6	3	0	0	0	0.29313	1	9898	9898		59.795	0	1	40692000			35086	3684	22304	22425	33788	33788					-0.008264104991440036
VAGAPGPR	8	Unmodified	_VAGAPGPR_					0	0	0		nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	MULTI-MSMS	HCT116MG_D190212_S2	2	362.7085876464844	2	362.708663	723.402772	-0.21218	-7.6959E-05	-0.074632	-2.707E-05	-0.28681	-0.00010403	362.7085893631934	17.813	0.3656	17.456	17.284	17.65	-0.35647					10	6	2	0	0	0	0.13911	1	6101	6101		86.121	11.725	1	3974200			35087	9496	22305	22426	33789	33789					0.030007082115730555
VAGAPGPR	8	Unmodified	_VAGAPGPR_					0	0	0		nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	MULTI-MSMS	HCT116MG_D190212_S2	2	362.7085876464844	2	362.708663	723.402772	-0.61451	-0.00022289	0.76818	0.00027863	0.15367	5.5739E-05	362.7088080051087	18.658	0.62518	18.295	18.061	18.686	-0.36325					17	11	2	0	0	0	0.23352	1	6433	6433		67.035	0	1	23149000			35088	9496	22305	22426	33790	33790					0.030007082115730555
VAGAPGPR	8	Unmodified	_VAGAPGPR_					0	0	0		nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	MULTI-MSMS	HCT116MG_D190212_S3	3	724.4104614257812	1	724.410049	723.402772	0.31263	0.00022647	0.60826	0.00044063	0.92089	0.0006671	724.4105074620828	17.819	0.36446	17.9	17.69	18.054	0.081356					12	6	2	0	0	0	0.11846	1	6006	6006		90.836	0	1	3634100			35089	9496	22305	22426	33791	33791					0.030007082115730555
VAGAPGPR	8	Unmodified	_VAGAPGPR_					0	0	0		nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	MULTI-MSMS	HCT116MG_D190212_S4	4	362.7085876464844	2	362.708663	723.402772	-0.43193	-0.00015667	0.22911	8.3099E-05	-0.20282	-7.3566E-05	362.7086976953696	17.174	0.41317	17.003	16.76	17.173	-0.17047					11	7	2	0	0	0	0.13911	1	5669	5669		86.121	11.725	1	2216500			35090	9496	22305	22426	33792	33792					0.030007082115730555
VAGAPGPR	8	Unmodified	_VAGAPGPR_					0	0	0		nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	MULTI-MSMS	HCT116MG_D190212_S4	4	362.7085266113281	2	362.708663	723.402772	-0.16716	-6.0631E-05	0.22757	8.2541E-05	0.060405	2.191E-05	362.70859473472854	18.097	0.93334	17.922	17.584	18.517	-0.17501					27	17	3	0	0	0	0.23352	1	6031	6031		67.035	0	1	12437000			35091	9496	22305	22426	33793	33793					0.030007082115730555
VAGAPGPR	8	Unmodified	_VAGAPGPR_					0	0	0		nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	nc|ENSG00000147883|P42772-2|CDKN2B	MULTI-MSMS	HCT116MG_D190212_S4	4	724.4105834960938	1	724.410049	723.402772	0.65083	0.00047147	0.42228	0.0003059	1.0731	0.00077737	724.4101219335472	18.097	0.41462	17.922	17.688	18.102	-0.17501					10	7	2	0	0	0	0.11846	1	6051	6051		90.836	0	1	3782900			35092	9496	22305	22426	33794	33794					0.030007082115730555
VAGAPRPG	8	Unmodified	_VAGAPRPG_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-MSMS	HCT116MG_D190212_S3	3	362.7085876464844	2	362.708663	723.402772	-0.23317	-8.4573E-05	0.1634	5.9265E-05	-0.069775	-2.5308E-05	362.7086230179352	16.906	0.36434	16.99	16.756	17.12	0.084467					10	6	2	0	0	0	0.21411	1	5639	5639		70.865	0	1	4570000			35093	895	22306	22427	33795	33795					0.030007082115730555
VAGAPRPG	8	Unmodified	_VAGAPRPG_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-SECPEP	HCT116MG_D190212_S3	3	363.1960754394531	2	362.708663	723.402772	-0.17347	-6.292E-05	0.15594	5.656E-05	-0.017535	-6.3602E-06	362.70862557666123	20.185	0.98944	20.233	19.791	20.78	0.048107					25	18	2	0	0	0	0.24076	1	7053	7053		32.117	0	1	14622000			35094	895	22306	22427	33796	33796					0.030007082115730555
VAGEDDESEDC	11	Unmodified	_VAGEDDESEDC_					0	0	0			REV__SPIDR|p.F143S|1|0.34|ENSG00000164808|chr8:47293933-47293933|T/C|missense_variant	REV__SPIDR|p.F143S|1|0.34|ENSG00000164808|chr8:47293933-47293933|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	584.7034912109375	2	584.700965	1167.38738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.979	1	25.689	25.189	26.189	-0.29022								0	0	0	0.94416	1	9233	9233		9.3831	5.4387	1		+		35095	17586	22307	22428	33797	33797					-0.18962080739743215
VAGGSYADRYT	11	Unmodified	_VAGGSYADRYT_					0	0	0			REV__ENST00000493471.2_1_14:23495300-23497005:-|nuORF	REV__ENST00000493471.2_1_14:23495300-23497005:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	580.7748413085938	2	580.272552	1158.53055	0.19726	0.00011446	0.37474	0.00021745	0.572	0.00033192	580.2727258977832	30.742	0.51073	30.378	30.21	30.72	-0.36416					27	14	2	0	0	0	0.69138	1	11083	11083		24.991	4.5764	1	9155700	+		35096	11101	22308	22429	33798	33798					-0.042372407757284236
VAGHGARG	8	Unmodified	_VAGHGARG_					0	0	0		ENST00000474114.5_1_21:45745300-45746742:+|nuORF	ENST00000474114.5_1_21:45745300-45746742:+|nuORF	ENST00000474114.5_1_21:45745300-45746742:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	724.3890380859375	1	724.384897	723.37762	1.2745	0.00092325	4.1464	0.0030036	5.4209	0.0039268	724.3878250422007	33.082	0.20834	32.871	32.739	32.948	-0.21135					5	3	2	0	0	0	0.86564	1	12293	12293		2.5775	0	1	28253000			35097	8182	22309	22430	33799	33799					0.004866534090069763
VAGIPILFLS	10	Unmodified	_VAGIPILFLS_					0	0	0		CLEC4E|p.R203Sfs*4|1|0.3|ENSG00000166523|chr12:8534691-8534692|-/A|frameshift_variant;ENSG00000166523|ENST00000299663|CLEC4E	CLEC4E|p.R203Sfs*4|1|0.3|ENSG00000166523|chr12:8534691-8534692|-/A|frameshift_variant	CLEC4E|p.R203Sfs*4|1|0.3|ENSG00000166523|chr12:8534691-8534692|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	515.3187866210938	2	515.320786	1028.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.081	1	43.008	42.508	43.508	-0.073376								0	0	0	0.85468	1	16325	16325		21.747	4.6338	1				35098	477	22310	22431	33800	33800					0.11384978522164602
VAGKSVIK	8	Unmodified	_VAGKSVIK_					0	0	0			REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	REV__tr|U7SKJ4|U7SKJ4_FUSNUUncharacterizedprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02177PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	401.26165771484375	2	401.263271	800.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.053	1	57.781	57.281	58.281	-0.27176								0	0	0	0.8837	1	22075	22075		0.79363	0	1		+		35099	17699	22311	22432	33801	33801					0.10375294111031508
VAGKWWMAP	9	Unmodified	_VAGKWWMAP_					0	0	0			REV__ENST00000511232.5_1_5:140047750-140048038:+|nuORF	REV__ENST00000511232.5_1_5:140047750-140048038:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	523.2975463867188	2	523.26803	1044.52151	0.25001	0.00013082	1.8211	0.00095291	2.0711	0.0010837	523.2688370277964	39.642	0.25704	39.564	39.477	39.734	-0.077835					7	4	2	0	0	0	0.23716	1	14991	14991		13.508	3.434	1	25177000	+		35100	16183	22312	22433	33802	33802					0.0010273912489537906
VAGLARLW	8	Unmodified	_VAGLARLW_					0	0	0			REV__ENST00000331134.10_1_17:79525220-79525361:-|nuORF	REV__ENST00000331134.10_1_17:79525220-79525361:-|nuORF	MSMS	HCT116MG_D190212_S4	4	443.6756896972656	2	443.268887	884.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.454	1	25.174	24.674	25.674	-0.27958								0	0	0	0.8837	1	9021	9021		10.183	0	1		+		35101	14929	22313	22434	33803	33803					0.07634116205167629
VAGLVLVMGF	10	Unmodified	_VAGLVLVMGF_					0	0	0			REV__ENSG00000225968|ENST00000424383|ELFN1	REV__ENSG00000225968|ENST00000424383|ELFN1	MSMS	HCT116MG_D190212_S1	1	503.2428894042969	2	503.293714	1004.57287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.178	1	47.178	46.678	47.678	0								0	0	0	0.93576	1	17919	17919		7.9102	0	1		+		35102	14309	22314	22435	33804	33804					0.07077063098984127
VAGNPPPN	8	Unmodified	_VAGNPPPN_					0	0	0		ENSG00000169071|ENST00000375708|ROR2;ENST00000548585.2_1_9:94518314-94538029:-|nuORF	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-MSMS	HCT116MG_D190212_S2	2	765.3894653320312	1	765.388979	764.381703	0.96408	0.0007379	-0.066256	-5.0712E-05	0.89782	0.00068718	765.3888335900292	19.218	0.20817	18.849	18.732	18.94	-0.3695					5	3	2	0	0	0	0.71835	1	6667	6667		20.871	2.7362	1	4619700			35103	5049	22315	22436	33805	33805					-0.009913018879615265
VAGQQQAR	8	Unmodified	_VAGQQQAR_					0	0	0		ENST00000567644.5_1_15:74208706-74212300:-|nuORF	ENST00000567644.5_1_15:74208706-74212300:-|nuORF	ENST00000567644.5_1_15:74208706-74212300:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	429.7557678222656	2	429.233033	856.451513	-0.018699	-8.0264E-06	0.44817	0.00019237	0.42947	0.00018434	429.2331521341663	16.239	0.15632	16.239	16.109	16.265	0					4	2	2	0	0	0	0.31507	1	5410	5410		5.2307	0.47466	1	1678500			35104	8868	22316	22437	33806	33806					0.01754576780649586
VAGRKKRRP	9	Unmodified	_VAGRKKRRP_					0	0	0		ENST00000592005.5_1_18:44497642-44497873:+|nuORF	ENST00000592005.5_1_18:44497642-44497873:+|nuORF	ENST00000592005.5_1_18:44497642-44497873:+|nuORF	MSMS	HCT116MG_D190212_S1	1	534.3483276367188	2	534.349066	1066.68358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.376	1	37.376	36.876	37.876	0								0	0	0	0.76877	1	13962	13962		5.2307	0	1				35105	9039	22317	22438	33807	33807					0.152904639220651
VAGSRSDP	8	Unmodified	_VAGSRSDP_					0	0	0			REV__ENST00000396662.5_1_7:12727310-12727798:+|nuORF	REV__ENST00000396662.5_1_7:12727310-12727798:+|nuORF	MSMS	HCT116MG_D190212_S1	1	394.5145568847656	2	394.698492	787.382431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.648	1	16.648	16.148	17.148	0								0	0	0	0.8837	1	5617	5617		9.3474	0	1		+		35106	15354	22318	22439	33808	33808					-0.01976507238907743
VAGTIVAG	8	Unmodified	_VAGTIVAG_					0	0	0			REV__ENST00000496081.5_1_6:29910330-29912419:+|nuORF	REV__ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	687.4032592773438	1	687.403566	686.39629	0.63745	0.00043818	-0.16565	-0.00011387	0.4718	0.00032431	687.4031943636423	31.277	0.25814	31.013	30.874	31.132	-0.26345					6	4	2	0	0	0	0.71835	1	11558	11558		20.871	0	1	7575500	+		35107	14244	22319	22440	33809	33809					0.04054770260177065
VAGTPAPPKAV	11	Unmodified	_VAGTPAPPKAV_					0	0	0		ENST00000496692.6_1_1:161551173-161559386:+|nuORF;nc|ENSG00000072694|P31994-5|FCGR2B;nc|ENSG00000072694|P31994-4|FCGR2B	ENST00000496692.6_1_1:161551173-161559386:+|nuORF	ENST00000496692.6_1_1:161551173-161559386:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	504.3374938964844	2	504.297842	1006.58113	0.41183	0.00020768	1.7857	0.00090051	2.1975	0.0011082	504.29886542082335	45.224	0.31298	44.915	44.732	45.045	-0.30927					7	5	2	0	0	0	0.36296	1	16943	16943		3.5965	1.2938	1	3615700			35108	8392	22320	22441	33810	33810					0.0781033333993264
VAGTPENKTRF	11	Unmodified	_VAGTPENKTRF_					0	0	0			REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	REV__tr|U7STB7|U7STB7_FUSNUDNApolymeraseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=polAPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	610.3247680664062	2	610.325119	1218.63569	0.84206	0.00051393	-0.21723	-0.00013258	0.62482	0.00038135	610.3247589936427	30.104	0.46785	29.747	29.493	29.961	-0.3571					14	8	2	0	0	0	0.74111	1	10869	10869		8.1555	8.1555	1	3458700	+		35109	17790	22321	22442	33811	33811					0.03511300420700536
VAGVAVAAAV	10	Unmodified	_VAGVAVAAAV_					0	0	0			REV__ENST00000563328.4_1_16:72822270-72822732:+|nuORF	REV__ENST00000563328.4_1_16:72822270-72822732:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	827.4988403320312	1	827.498529	826.491253	0.66539	0.00055061	-0.39005	-0.00032277	0.27533	0.00022784	827.4985907255178	47.909	0.31261	47.593	47.462	47.775	-0.31596					7	5	2	0	0	0	0.42503	1	18028	18028		40.449	0	1	8222700	+		35110	16509	22322	22443	33812	33812					0.07106703731369635
VAHFQRQML	9	Unmodified	_VAHFQRQML_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	HCT116MG_D190212_S2	2	565.300537109375	2	565.300393	1128.58623	0.54062	0.00030561	0.4774	0.00026988	1.018	0.00057549	565.3006192257628	48.788	0.304	48.645	48.49	48.794	-0.1437					9	5	2	0	0	0	0.59184	1	18678	18678		11.64	0.14559	1	44066000			35111	4729	22323	22444	33813	33813					0.02708313930929762
VAHGCQPG	8	Unmodified	_VAHGCQPG_					0	0	0		ENST00000372954.5_1_9:130948054-130953733:-|nuORF;ENST00000357558.9_1_9:130950179-130953733:-|nuORF;ENST00000324544.6_1_9:130950179-130954033:-|nuORF;ENST00000420484.2_1_9:130950179-130953656:-|nuORF	ENST00000372954.5_1_9:130948054-130953733:-|nuORF	ENST00000372954.5_1_9:130948054-130953733:-|nuORF	MSMS	HCT116MG_D190212_S1	1	384.6763000488281	2	384.676505	767.338458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.293	1	22.293	21.793	22.793	0								0	0	0	0.8837	1	7886	7886		2.8892	0	1				35112	7125	22324	22445	33814	33814					-0.05451814936895971
VAHIVTQTIP	10	Unmodified	_VAHIVTQTIP_					0	0	0			REV__LGALS9|p.T199A|1|0.17|ENSG00000168961|chr17:27645879-27645879|A/G|missense_variant	REV__LGALS9|p.T199A|1|0.17|ENSG00000168961|chr17:27645879-27645879|A/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	539.81689453125	2	539.816399	1077.61824	0.53791	0.00029037	-0.085055	-4.5914E-05	0.45286	0.00024446	539.816279218271	37.357	0.20814	37.055	36.925	37.133	-0.30137					6	3	2	0	0	0	0.75557	1	13863	13863		24.021	0	1	7522600	+		35113	16976	22325	22446	33815	33815					0.0825400488570267
VAIFYPLRY	9	Unmodified	_VAIFYPLRY_					0	0	0		OR13C8|p.C127F|1|0.46|ENSG00000186943|chr9:104569547-104569547|G/T|missense_variant	OR13C8|p.C127F|1|0.46|ENSG00000186943|chr9:104569547-104569547|G/T|missense_variant	OR13C8|p.C127F|1|0.46|ENSG00000186943|chr9:104569547-104569547|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	381.2181701660156	3	381.218332	1140.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.592	1	32.31	31.81	32.81	-0.28272								0	0	0	0.76699	1	11951	11951		11.495	0	1				35114	9717	22326	22447	33816	33816					0.06847496753698579
VAIKCVAK	8	Unmodified	_VAIKCVAK_					0	0	0		nc|ENSG00000140474|Q6PHR2-4|ULK3;ENST00000562395.5_1_15:75134617-75135536:-|nuORF;nc|ENSG00000140474|Q6PHR2-2|ULK3;ENST00000570276.5_1_15:75132809-75135659:-|nuORF;nc|ENSG00000140474|Q6PHR2-3|ULK3;ENSG00000140474|ENST00000440863|ULK3	nc|ENSG00000140474|Q6PHR2-4|ULK3	nc|ENSG00000140474|Q6PHR2-4|ULK3	MULTI-MSMS	HCT116MG_D190212_S1	1	416.2598571777344	2	416.259674	830.504795	-0.024201	-1.0074E-05	0.21779	9.0658E-05	0.19359	8.0584E-05	416.25967496498316	22.194	0.20893	22.194	22.063	22.272	0					5	3	2	0	0	0	0.3916	1	7861	7861		50.855	12.704	1	3441900			35115	9476	22327	22448	33817	33817					0.08276238238966016
VAIYLTEP	8	Unmodified	_VAIYLTEP_					0	0	0		nc|ENSG00000170615|P58743-2|SLC26A5;SLC26A5|p.F693Lfs*19|1|0.36|ENSG00000170615|chr7:103374555-103374555|A/-|frameshift_variant;nc|ENSG00000170615|P58743-5|SLC26A5;nc|ENSG00000170615|P58743-6|SLC26A5;ENSG00000170615|ENST00000306312|SLC26A5;SLC26A5|p.I619Nfs*9|2|0.3|ENSG00000170615|chr7:103377731-103377732|-/G|frameshift_variant;nc|ENSG00000170615|P58743-4|SLC26A5;nc|ENSG00000170615|P58743-3|SLC26A5	nc|ENSG00000170615|P58743-2|SLC26A5	nc|ENSG00000170615|P58743-2|SLC26A5	MSMS	HCT116MG_D190212_S2	2	453.2506103515625	2	453.252569	904.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.61	1	31.362	30.862	31.862	-0.24883								0	0	0	0.8217	1	11667	11667		20.871	0	1				35116	5146	22328	22449	33818	33818					0.03451864291662332
VAKCKCPQKEY	11	Unmodified	_VAKCKCPQKEY_					0	0	0			REV__ENSG00000105708|ENST00000344099|ZNF14	REV__ENSG00000105708|ENST00000344099|ZNF14	MSMS	HCT116MG_D190212_S4	4	432.659912109375	3	432.886148	1295.63661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.947	1	12.782	12.282	13.282	-0.16496								0	0	0	0.96111	1	4041	4041		0.50596	0.23694	1		+		35117	11270	22329	22450	33819	33819					0.0006205547374520393
VAKCLGRG	8	Unmodified	_VAKCLGRG_					0	0	0			REV__ENST00000462874.1_1_10:100173939-100174892:-|nuORF	REV__ENST00000462874.1_1_10:100173939-100174892:-|nuORF	MSMS	HCT116MG_D190212_S4	4	402.2327880859375	2	402.231448	802.448342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.593	1	34.208	33.708	34.708	-0.38558								0	0	0	0.8837	1	12638	12638		2.3027	0	1		+		35118	11678	22330	22451	33820	33820					0.03921610402301212
VAKFRDYEEK	10	Unmodified	_VAKFRDYEEK_					0	0	0		nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1;ENST00000466803.1_1_1:60330814-60338634:+|nuORF	nc|ENSG00000134709|Q9UJC3-2|HOOK1	nc|ENSG00000134709|Q9UJC3-2|HOOK1	MSMS	HCT116MG_D190212_S2	2	429.0886535644531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.812	1	11.523	11.023	12.023	-0.28953								0	0	0	0.96836	1	3829	3829		0.62683	0.17231	1				35119	3298	22331	22452	33821	33821					0.020521672178801964
VAKKLHRRLL	10	Unmodified	_VAKKLHRRLL_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MSMS	HCT116MG_D190212_S4	4	411.9450988769531	3	411.947058	1232.81934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.124	1	15.96	15.46	16.46	-0.16364								0	0	0	0.97045	1	5253	5253		0.15932	0	1				35120	5991	22332	22453	33822	33822					0.21224738712885483
VAKQGRAR	8	Unmodified	_VAKQGRAR_					0	0	0		ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	443.2716064453125	2	443.272493	884.530432	0.37596	0.00016665	-0.19818	-8.785E-05	0.17778	7.8803E-05	443.2723183439135	46.323	1.03	45.951	45.765	46.795	-0.37134					52	34	2	0	0	0	0.8672	1	17072	17072		2.3027	0	1	13214000			35121	8439	22333	22454	33823	33823					0.08354848805595338
VAKQGRAR	8	Unmodified	_VAKQGRAR_					0	0	0		ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	443.7740783691406	2	443.272493	884.530432	0.16868	7.477E-05	-0.62806	-0.0002784	-0.45938	-0.00020363	443.2721544762499	50.014	0.99268	49.655	49.32	50.312	-0.35878					41	21	3	0	0	0	0.8672	2	18570	18570;18759		2.3027	0	1	13706000			35122	8439	22333	22454	33824;33825	33824					0.08354848805595338
VAKQGRAR	8	Unmodified	_VAKQGRAR_					0	0	0		ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	443.7641906738281	2	443.272493	884.530432	0.22791	0.00010103	-0.20971	-9.2957E-05	0.018203	8.0689E-06	443.2725102509623	50.926	0.8812	50.571	50.316	51.197	-0.35483					20	16	2	0	0	0	0.33446	1	18958	18958		2.3027	0	1	2865000			35123	8439	22333	22454	33826	33826					0.08354848805595338
VAKRIALLRV	10	Unmodified	_VAKRIALLRV_					0	0	0		ENST00000470453.1_1_6:31936465-31937326:+|nuORF	ENST00000470453.1_1_6:31936465-31937326:+|nuORF	ENST00000470453.1_1_6:31936465-31937326:+|nuORF	MSMS	HCT116MG_D190212_S1	1	380.20068359375	3	380.264276	1137.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.349	1	59.349	58.849	59.849	0								0	0	0	0.97116	1	22873	22873		0	0	1				35124	8148	22334	22455	33827	33827					0.2076224507295592
VAKRIALLRV	10	Unmodified	_VAKRIALLRV_					0	0	0		ENST00000470453.1_1_6:31936465-31937326:+|nuORF	ENST00000470453.1_1_6:31936465-31937326:+|nuORF	ENST00000470453.1_1_6:31936465-31937326:+|nuORF	MSMS	HCT116MG_D190212_S4	4	380.2641906738281	3	380.264276	1137.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.952	1	58.669	58.169	59.169	-0.28305								0	0	0	0.97116	1	22172	22172		0	0	1				35125	8148	22334	22455	33828	33828					0.2076224507295592
VAKRPKRRG	9	Unmodified	_VAKRPKRRG_					0	0	0			REV__ENST00000398802.5_1_11:65149987-65150050:-|nuORF	REV__ENST00000398802.5_1_11:65149987-65150050:-|nuORF	MSMS	HCT116MG_D190212_S3	3	534.3479614257812	2	534.349066	1066.68358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.571	1	37.27	36.77	37.77	-0.30137								0	0	0	0.7696	1	13921	13921		2.3027	0	1		+		35126	15382	22335	22456	33829	33829					0.152904639220651
VAKTKKKTKK	10	Unmodified	_VAKTKKKTKK_					0	0	0			REV__nc|ENSG00000135541|Q8N157-3|AHI1	REV__nc|ENSG00000135541|Q8N157-3|AHI1	MULTI-MSMS	HCT116MG_D190212_S2	2	580.3983154296875	2	580.39789	1158.78123	0.51381	0.00029821	-0.18751	-0.00010883	0.3263	0.00018938	580.3977814114993	60.088	1.0808	59.933	59.441	60.521	-0.15441					25	20	2	0	0	0	0.89293	1	23192	23192		0.35063	0	1	13014000	+		35127	12098	22336	22457	33830	33830					0.20818808007538792
VALFNKGG	8	Unmodified	_VALFNKGG_					0	0	0		ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	403.232666015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.188	1	12.243	11.743	12.743	0.055045								0	0	0	0.8837	1	3783	3783		0.79363	0	1				35128	62	22337	22458	33831	33831					0.03934148042867491
VALFNKGG	8	Unmodified	_VALFNKGG_					0	0	0		ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	403.172119140625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.225	1	12.288	11.788	12.788	0.06246								0	0	0	0.8837	1	3797	3797		0.79363	0	1				35129	62	22337	22458	33832	33832					0.03934148042867491
VALFNKGG	8	Unmodified	_VALFNKGG_					0	0	0		ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	403.2323913574219	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.817	1	12.88	12.38	13.38	0.06246								0	0	0	0.8837	1	4025	4025		0.79363	0	1				35130	62	22337	22458	33833	33833					0.03934148042867491
VALFNKGG	8	Unmodified	_VALFNKGG_					0	0	0		ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	403.2325134277344	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.722	1	12.553	12.053	13.053	-0.16903								0	0	0	0.8837	1	3961	3961		0.79363	0	1				35131	62	22337	22458	33834	33834					0.03934148042867491
VALFNKGG	8	Unmodified	_VALFNKGG_					0	0	0		ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;ADGRV1|p.N3627Ifs*14|1|0.34|ENSG00000164199|chr5:90745697-90745697|A/-|frameshift_variant;ADGRV1|p.G3807Dfs*10|1|0.16|ENSG00000164199|chr5:90755021-90755021|A/-|frameshift_variant;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	403.23260498046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.869	1	13.707	13.207	14.207	-0.16233								0	0	0	0.8837	1	4368	4368		0.79363	0	1				35132	62	22337	22458	33835	33835					0.03934148042867491
VALGIEAEP	9	Unmodified	_VALGIEAEP_					0	0	0			REV__NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant	REV__NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	898.7134399414062	1	898.488024	897.480748	0.70589	0.00063424	0.25563	0.00022968	0.96153	0.00086392	898.4878950313669	47.749	0.56464	47.433	47.211	47.776	-0.31525					22	10	3	0	0	0	0.030247	2	18061	18040;18061		86.121	8.137	1	7213100	+		35133	11208	22338	22459	33836;33837	33837					0.027906762862812684
VALGIEAEP	9	Unmodified	_VALGIEAEP_					0	0	0			REV__NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant	REV__NBN|p.L654Afs*5|1|0.27|ENSG00000104320|chr8:89946251-89946252|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	898.378173828125	1	898.488024	897.480748	0.74749	0.00067161	-0.088318	-7.9353E-05	0.65917	0.00059226	898.4877782473977	47.69	0.48476	47.321	47.19	47.674	-0.36907					18	12	2	0	0	0	0.030247	1	17724	17724		86.121	4.2573	1	4206300	+		35134	11208	22338	22459	33838	33838					0.027906762862812684
VALHRHRRRRW	11	Unmodified	_VALHRHRRRRW_					0	0	0			REV__ENST00000589935.1_1_18:54318575-54318788:+|nuORF	REV__ENST00000589935.1_1_18:54318575-54318788:+|nuORF	MSMS	HCT116MG_D190212_S3	3	514.9766235351562	3	514.974893	1541.90285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.045	1	45.732	45.232	46.232	-0.31237								0	0	0	0.9593	1	17258	17258		1.4551	0.94916	1		+		35135	16683	22339	22460	33839	33839					0.1535728793328417
VALHRQLKFPK	11	Unmodified	_VALHRQLKFPK_					0	0	0			REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	REV__ZNF469|p.R3417Gfs*56|2|0.61|ENSG00000225614|chr16:88437795-88437795|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	668.9138793945312	2	668.914239	1335.81392	0.67937	0.00045444	-0.33886	-0.00022667	0.34051	0.00022777	668.9137732733843	49.228	0.25833	49.228	49.079	49.337	0					8	4	2	0	0	0	0.71271	1	18771	18771		17.113	2.2746	1	29861000	+		35136	14306	22340	22461	33840	33840					0.15945015130409956
VALHRQLQPRP	11	Unmodified	_VALHRQLQPRP_					0	0	0		ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant;ITGA7|p.G397Vfs*7|1|0.24|ENSG00000135424|chr12:55698517-55698517|C/-|frameshift_variant;ITGA7|p.A398Cfs*25|1|0.32|ENSG00000135424|chr12:55698516-55698517|-/C|frameshift_variant;ITGA7|p.R581Qfs*8|1|0.09|ENSG00000135424|chr12:55697026-55697027|-/TT|frameshift_variant;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000554359.1_1_12:56096799-56101466:-|nuORF;nc|ENSG00000135424|Q13683-3|ITGA7	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	ITGA7|p.R331Pfs*42|1|0.13|ENSG00000135424|chr12:55698848-55698849|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	439.26470947265625	3	438.929955	1313.76804	0.15983	7.0156E-05	-0.13469	-5.9119E-05	0.025145	1.1037E-05	439.2647608189053	20.461	0.26065	20.461	20.279	20.54	0					9	4	3	0	0	0	0.73177	1	7174	7174		5.0475	0.3316	1	9004600			35137	3348	22341	22462	33841	33841					0.12370369948166626
VALLFVLIRKM	11	Unmodified	_VALLFVLIRKM_					0	0	0			REV__CON__Q3MHN5	REV__CON__Q3MHN5	MULTI-MSMS	HCT116MG_D190212_S4	4	434.94854736328125	3	434.949188	1301.82573	0.36883	0.00016042	-1.1601	-0.00050458	-0.79126	-0.00034416	434.94848410334953	55.915	0.42339	55.603	55.402	55.825	-0.312					11	7	2	0	0	0	0.74191	1	20960	20960		0.40827	0.24894	1	4608800	+	+	35138	10252	22342	22463	33842	33842					0.18689495829357838
VALLFVLIRKM	11	Unmodified	_VALLFVLIRKM_					0	0	0			REV__CON__Q3MHN5	REV__CON__Q3MHN5	MULTI-MATCH	HCT116MG_D190212_S1	1		3	434.949188	1301.82573	0.088371	3.8437E-05	-1.1337	-0.00049311	-1.0454	-0.00045468	434.94859444369183	55.58	0.6152	55.58	55.298	55.913	0	-0.006473	-0.0001549	NaN	0.40827	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27342000	+	+	35139	10252	22342	22463							0.18689495829357838
VALLFVLIRKM	11	Unmodified	_VALLFVLIRKM_					0	0	0			REV__CON__Q3MHN5	REV__CON__Q3MHN5	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	434.949188	1301.82573	0.086957	3.7822E-05	-0.91323	-0.00039721	-0.82628	-0.00035939	434.94862746985586	55.762	0.61783	55.577	55.38	55.998	-0.18565	-0.0098431	0.00013281	NaN	0.40827	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65811000	+	+	35140	10252	22342	22463							0.18689495829357838
VALMGLFYY	9	Unmodified	_VALMGLFYY_					0	0	0			REV__ENSG00000278870|ENST00000623849|OR51G1	REV__ENSG00000278870|ENST00000623849|OR51G1	MSMS	HCT116MG_D190212_S1	1	538.7764892578125	2	538.777896	1075.54124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.587	1	36.587	36.087	37.087	0								0	0	0	0.76611	1	13643	13643		14.582	0	1		+		35141	14471	22343	22464	33843	33843					0.006490703450253932
VALSAAHL	8	Unmodified	_VALSAAHL_					0	0	0			REV__ENST00000203407.5_1_3:48638499-48638855:-|nuORF	REV__ENST00000203407.5_1_3:48638499-48638855:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	391.19635009765625	2	391.231971	780.449388	0.024515	9.5911E-06	-0.069538	-2.7206E-05	-0.045023	-1.7614E-05	391.23189241016524	26.11	0.31314	26.11	25.927	26.24	0					7	5	2	0	0	0	0.18695	1	9395	9395		49.669	0	1	12937000	+		35142	14495	22344	22465	33844	33844					0.050381480428427494
VALSQRTTVP	10	Unmodified	_VALSQRTTVP_					0	0	0		nc|ENSG00000100644|Q16665-2|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.1649169921875	2	536.31148	1070.60841	0.44561	0.00023899	0.29316	0.00015722	0.73877	0.00039621	536.3114100608052	52.866	0.72451	52.676	52.293	53.018	-0.18922					31	13	3	0	0	0	0.3111	1	20330	20330		1.6526	0	1	26714000			35143	1722	22345	22466	33845	33845					0.07592816880310238
VALSVKRR	8	Unmodified	_VALSVKRR_					0	0	0		ENST00000247461.8_1_5:179153698-179155607:+|nuORF	ENST00000247461.8_1_5:179153698-179155607:+|nuORF	ENST00000247461.8_1_5:179153698-179155607:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	464.80633544921875	2	464.806168	927.597784	0.099195	4.6106E-05	0.38919	0.0001809	0.48838	0.000227	464.80630044986566	57.782	0.7776	57.782	57.256	58.034	0					24	14	2	0	0	0	0.87635	1	22135	22135		0.69038	0	1	8614200			35144	6791	22346	22467	33846	33846					0.13108879016567698
VALSVKRR	8	Unmodified	_VALSVKRR_					0	0	0		ENST00000247461.8_1_5:179153698-179155607:+|nuORF	ENST00000247461.8_1_5:179153698-179155607:+|nuORF	ENST00000247461.8_1_5:179153698-179155607:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	464.806168	927.597784	0.26119	0.0001214	-0.15443	-7.1779E-05	0.10676	4.9623E-05	464.8059453760753	58.088	0.31138	57.918	57.683	57.994	-0.1703	0.067941	-0.00040904	NaN	0.69038	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9410800			35145	6791	22346	22467							0.13108879016567698
VALTGIRRFL	10	Unmodified	_VALTGIRRFL_					0	0	0		tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	tr|U7ST96|U7ST96_FUSNUHeavymetaltranslocatingP-typeATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01272PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	573.3605346679688	2	573.361308	1144.70806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.239	1	54.239	53.739	54.739	0								0	0	0	0.75886	1	20793	20793		34.102	15.956	1				35146	18430	22347	22468	33847	33847					0.14149679284946615
VALWNSTNL	9	Unmodified	_VALWNSTNL_					0	0	0			REV__ENST00000569153.1_1_16:64294558-64295142:-|nuORF	REV__ENST00000569153.1_1_16:64294558-64295142:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.8200378417969	2	509.271824	1016.5291	0.16967	8.6406E-05	2.8357	0.0014441	3.0054	0.0015306	509.2732773410303	39.527	0.25924	39.527	39.346	39.605	0					6	4	2	0	0	0	0.19936	1	14815	14815		27.629	0	1	3944400	+		35147	16565	22348	22469	33848	33848					0.02149169926178729
VAMEAVAA	8	Unmodified	_VAMEAVAA_					0	0	0		nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2;GLI2|p.R1387Lfs*143|1|0.1|ENSG00000074047|chr2:120990074-120990074|G/-|frameshift_variant;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2	nc|ENSG00000074047|P10070-4|GLI2	nc|ENSG00000074047|P10070-4|GLI2	MULTI-MSMS	HCT116MG_D190212_S3	3	761.3868408203125	1	761.386202	760.378925	0.58638	0.00044647	0.46536	0.00035432	1.0517	0.00080079	761.3865069311947	33.983	0.31252	33.689	33.559	33.871	-0.29419					9	5	2	0	0	0	0.47906	1	12518	12518		42.968	2.5194	1	5978200			35148	1293	22349	22470	33849	33849					-0.010848933371335079
VAMGVYRV	8	Unmodified	_VAMGVYRV_					0	0	0		ENSG00000158258|ENST00000458420|CLSTN2	ENSG00000158258|ENST00000458420|CLSTN2	ENSG00000158258|ENST00000458420|CLSTN2	MULTI-MSMS	HCT116MG_D190212_S1	1	447.7469482421875	2	447.746931	893.479308	0.18526	8.2948E-05	-0.0131	-5.8656E-06	0.17216	7.7083E-05	447.74684424486617	35.967	0.2606	35.967	35.837	36.098	0					6	4	2	0	0	0	0.6854	1	13424	13424		24.674	3.8027	1	7551100			35149	4363	22350	22471	33850	33850					0.02830763716531237
VANKLAIV	8	Unmodified	_VANKLAIV_					0	0	0			REV__ENST00000459881.1_1_3:170784284-170789158:-|nuORF	REV__ENST00000459881.1_1_3:170784284-170789158:-|nuORF	MSMS	HCT116MG_D190212_S3	3	414.0602111816406	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.098	1	14.173	13.673	14.673	0.074899								0	0	0	0.8837	1	4515	4515		0.79363	0	1		+		35150	12677	22351	22472	33851	33851					0.10743580628070504
VANNMEGLRTY	11	Unmodified	_VANNMEGLRTY_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	MULTI-MSMS	HCT116MG_D190212_S2	2	423.20843505859375	3	423.208167	1266.60267	0.20282	8.5835E-05	0.49598	0.0002099	0.6988	0.00029574	423.20821616830574	34.303	0.36343	34.128	33.967	34.331	-0.17511					9	6	2	0	0	0	0.63066	1	12776	12776		21.241	4.403	1	43117000	+		35151	11502	22352	22473	33852	33852					-0.019966496936376643
VANRYFTTV	9	Unmodified	_VANRYFTTV_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000467707.1_1_9:128116999-128121864:+|nuORF;ENST00000474637.5_1_9:128108952-128125022:+|nuORF	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.1657104492188	2	535.785099	1069.55564	0.57837	0.00030988	0.37933	0.00020324	0.9577	0.00051312	535.7852698866193	31.242	0.25738	30.975	30.819	31.077	-0.26704					6	4	2	0	0	0	0.25445	1	11534	11534		4.756	0	1	7043100			35152	4755	22353	22474	33853	33853					0.0236485881750923
VAPAALAP	8	Unmodified	_VAPAALAP_					0	0	0			REV__nc|ENSG00000162522|Q9P206|NHSL3	REV__nc|ENSG00000162522|Q9P206|NHSL3	MSMS	HCT116MG_D190212_S4	4	355.2156982421875	2	355.215789	708.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.284	1	12.115	11.615	12.615	-0.16903								0	0	0	0.8837	1	3806	3806		0	0	1		+		35153	12879	22354	22475	33854	33854					0.05115360639831579
VAPEEHPT	8	Unmodified	_VAPEEHPT_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MULTI-MSMS	HCT116MG_D190212_S3	3	440.2136535644531	2	440.213975	878.413397	0.091325	4.0203E-05	-0.22997	-0.00010124	-0.13865	-6.1035E-05	440.2137253580567	16.126	0.31188	16.211	16.081	16.393	0.085424					10	5	3	0	0	0	0.19622	1	5330	5330		74.396	44.171	1	4370800			35154	3824	22355	22476	33855	33855					-0.030673539246663495
VAPEEHPT	8	Unmodified	_VAPEEHPT_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MULTI-MSMS	HCT116MG_D190212_S4	4	440.2139587402344	2	440.213975	878.413397	-0.37106	-0.00016334	0.19323	8.5065E-05	-0.17782	-7.828E-05	440.21389421949135	16.411	0.3325	16.247	16.07	16.403	-0.16364					10	6	2	0	0	0	0.19622	2	5362	5342;5362		74.396	40.209	1	1769700			35155	3824	22355	22476	33856;33857	33857					-0.030673539246663495
VAPEEHPV	8	Unmodified	_VAPEEHPV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;POTEF|p.L804P|1|0.35|ENSG00000196604|chr2:130075061-130075061|A/G|missense_variant	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MSMS	HCT116MG_D190212_S3	3	439.2243347167969	2	439.224342	876.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.357	1	21.375	20.875	21.875	0.018446								0	0	0	0.65532	1	7438	7438		34.187	5.7005	1				35156	1322	22356	22477	33858	33858					-0.009027635450024718
VAPEGVAVV	9	Unmodified	_VAPEGVAVV_					0	0	0			REV__ROBO3|p.R191Afs*31|3|0.5|ENSG00000154134|chr11:124869527-124869527|C/-|frameshift_variant	REV__ROBO3|p.R191Afs*31|3|0.5|ENSG00000154134|chr11:124869527-124869527|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	840.4828491210938	1	840.482545	839.475269	0.92539	0.00077778	-0.14836	-0.00012469	0.77704	0.00065309	840.4821886989846	44.908	0.54663	44.598	44.394	44.941	-0.30927					23	11	3	0	0	0	0.072989	1	16768	16768		63.563	6.0915	1	46746000	+		35157	12671	22357	22478	33859	33859					0.04910997494471303
VAPFPEVFG	9	Unmodified	_VAPFPEVFG_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S3	3	962.49951171875	1	962.498195	961.490919	0.81411	0.00078358	0.19261	0.00018539	1.0067	0.00096896	962.4985790042984	56.878	0.20855	56.599	56.468	56.677	-0.27913					5	3	2	0	0	0	0.47829	1	21633	21633		18.135	3.5533	1	1945700		+	35158	548	22358	22479	33860	33860					0.008632840115296858
VAPFPEVFG	9	Unmodified	_VAPFPEVFG_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MATCH	HCT116MG_D190212_S1	1		1	962.498195	961.490919	0.72685	0.00069959	0.35082	0.00033766	1.0777	0.0010373	962.4984361573637	56.597	0.20628	56.597	56.48	56.686	0	0.016703	0.00011066	NaN	18.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7506400		+	35159	548	22358	22479							0.008632840115296858
VAPFPEVFG	9	Unmodified	_VAPFPEVFG_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MATCH	HCT116MG_D190212_S4	4		1	962.498195	961.490919	0.73905	0.00071133	0.07076	6.8106E-05	0.80981	0.00077944	962.4986184802943	56.846	0.15638	56.545	56.467	56.623	-0.3004	-0.035216	-0.0001589	NaN	18.135	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1185200		+	35160	548	22358	22479							0.008632840115296858
VAPGSHQP	8	Unmodified	_VAPGSHQP_					0	0	0			REV__ENST00000421462.5_1_2:159314085-159314565:+|nuORF	REV__ENST00000421462.5_1_2:159314085-159314565:+|nuORF	MSMS	HCT116MG_D190212_S1	1	396.2324523925781	2	396.703577	791.392602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.35	1	17.35	16.85	17.85	0								0	0	0	0.8837	1	5899	5899		5.2307	0	1		+		35161	15524	22359	22480	33861	33861					-0.011438995136813901
VAPKKARL	8	Unmodified	_VAPKKARL_					0	0	0		DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant;ENSG00000174844|ENST00000495027|DNAH12	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	DNAH12|p.H2653Sfs*22|1|0.24|ENSG00000174844|chr3:57314595-57314596|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	882.5862426757812	1	882.588348	881.581071	1.0147	0.00089559	-0.7648	-0.00067501	0.24993	0.00022059	882.5854129673494	60.299	3.5211	60.047	58.008	61.529	-0.25233					164	67	3	0	0	0	0.87635	1	23143	23143		0.69038	0	1	21512000			35162	699	22360	22481	33862	33862					0.13554378130595524
VAPPKAHEV	9	Unmodified	_VAPPKAHEV_					0	0	0		ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENSG00000197894|ENST00000296412|ADH5;ENST00000507102.5_2_4:100003111-100009857:-|nuORF;ENST00000508511.5_1_4:99997418-100009857:-|nuORF;ENSG00000248144|ENST00000515683|ADH1C;ENSG00000187758|ENST00000209668|ADH1A;ENSG00000198099|ENST00000265512|ADH4;nc|ENSG00000198099|P08319-2|ADH4	ENST00000512621.5_1_4:99993722-100006301:-|nuORF	ENST00000512621.5_1_4:99993722-100006301:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	474.2687683105469	2	474.269084	946.523616	0.095117	4.5111E-05	-0.20276	-9.6161E-05	-0.10764	-5.105E-05	474.268937427213	19.56	0.31255	19.56	19.339	19.652	0					8	5	2	0	0	0	0.16306	1	6811	6811		45.7	5.7423	1	3741000			35163	6185	22361	22482	33863	33863					0.04821491134373446
VAPPKAHEV	9	Unmodified	_VAPPKAHEV_					0	0	0		ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENSG00000197894|ENST00000296412|ADH5;ENST00000507102.5_2_4:100003111-100009857:-|nuORF;ENST00000508511.5_1_4:99997418-100009857:-|nuORF;ENSG00000248144|ENST00000515683|ADH1C;ENSG00000187758|ENST00000209668|ADH1A;ENSG00000198099|ENST00000265512|ADH4;nc|ENSG00000198099|P08319-2|ADH4	ENST00000512621.5_1_4:99993722-100006301:-|nuORF	ENST00000512621.5_1_4:99993722-100006301:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	474.2691650390625	2	474.269084	946.523616	0.1603	7.6026E-05	0.72495	0.00034382	0.88525	0.00041985	474.2691606202757	20.235	0.41948	19.855	19.657	20.076	-0.37949					12	7	3	0	0	0	0.14362	1	7074	7074		49.554	5.696	1	12244000			35164	6185	22361	22482	33864	33864					0.04821491134373446
VAPSWGPR	8	Unmodified	_VAPSWGPR_					0	0	0			REV__nc|ENSG00000277758|X6R8R1|SYT15B	REV__nc|ENSG00000277758|X6R8R1|SYT15B	MSMS	HCT116MG_D190212_S3	3	435.3257751464844	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.152	1	13.222	12.722	13.722	0.069158								0	0	0	0.8837	1	4153	4153		0.79363	0	1		+		35165	17266	22362	22483	33865	33865					0.01604666274374722
VAPSWGPR	8	Unmodified	_VAPSWGPR_					0	0	0			REV__nc|ENSG00000277758|X6R8R1|SYT15B	REV__nc|ENSG00000277758|X6R8R1|SYT15B	MSMS	HCT116MG_D190212_S3	3	435.4934997558594	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.211	1	13.281	12.781	13.781	0.069158								0	0	0	0.8837	1	4176	4176		0.79363	0	1		+		35166	17266	22362	22483	33866	33866					0.01604666274374722
VAPSWGPR	8	Unmodified	_VAPSWGPR_					0	0	0			REV__nc|ENSG00000277758|X6R8R1|SYT15B	REV__nc|ENSG00000277758|X6R8R1|SYT15B	MSMS	HCT116MG_D190212_S4	4	435.2353210449219	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.717	1	12.548	12.048	13.048	-0.16903								0	0	0	0.8837	1	3959	3959		0.79363	0	1		+		35167	17266	22362	22483	33867	33867					0.01604666274374722
VAPSWGPR	8	Unmodified	_VAPSWGPR_					0	0	0			REV__nc|ENSG00000277758|X6R8R1|SYT15B	REV__nc|ENSG00000277758|X6R8R1|SYT15B	MSMS	HCT116MG_D190212_S4	4	435.49334716796875	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.573	1	13.41	12.91	13.91	-0.16233								0	0	0	0.8837	1	4263	4263		0.79363	0	1		+		35168	17266	22362	22483	33868	33868					0.01604666274374722
VAQAPTAL	8	Unmodified	_VAQAPTAL_					0	0	0		ENSG00000174327|ENST00000308027|SLC16A13	ENSG00000174327|ENST00000308027|SLC16A13	ENSG00000174327|ENST00000308027|SLC16A13	MSMS	HCT116MG_D190212_S3	3	385.8346862792969	2	385.723978	769.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.645	1	13.72	13.22	14.22	0.074899								0	0	0	0.8837	1	4341	4341		0.79363	0	1				35169	5325	22363	22484	33869	33869					0.03946441805931045
VAQAPTAL	8	Unmodified	_VAQAPTAL_					0	0	0		ENSG00000174327|ENST00000308027|SLC16A13	ENSG00000174327|ENST00000308027|SLC16A13	ENSG00000174327|ENST00000308027|SLC16A13	MSMS	HCT116MG_D190212_S3	3	386.0577087402344	2	385.723978	769.433404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.688	1	13.763	13.263	14.263	0.074899								0	0	0	0.8837	1	4358	4358		0.79363	0	1				35170	5325	22363	22484	33870	33870					0.03946441805931045
VAQASLAY	8	Unmodified	_VAQASLAY_					0	0	0			REV__nc|ENSG00000181109|Q8NH57|OR52P1	REV__nc|ENSG00000181109|Q8NH57|OR52P1	MULTI-MSMS	HCT116MG_D190212_S4	4	822.4366455078125	1	822.435595	821.428318	0.63241	0.00052012	0.48432	0.00039833	1.1167	0.00091844	822.4357959951026	38.364	0.2833	37.981	37.812	38.095	-0.38283					8	5	2	0	0	0	0.2477	1	14052	14052		64.236	0	1	2676800	+		35171	17231	22364	22485	33871	33871					0.010461379433309048
VAQEALSA	8	Unmodified	_VAQEALSA_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1;ENST00000523043.5_1_5:167798471-167835524:+|nuORF;WWC1|p.S255Lfs*26|1|0.42|ENSG00000113645|chr5:168408544-168408544|G/-|frameshift_variant	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MSMS	HCT116MG_D190212_S2	2	394.7106018066406	2	394.711068	787.407583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.921	1	31.684	31.184	32.184	-0.23675								0	0	0	0.8837	1	11793	11793		5.7604	0	1				35172	2400	22365	22486	33872	33872					0.00537547563658336
VAQKFVETHPE	11	Unmodified	_VAQKFVETHPE_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MSMS	HCT116MG_D190212_S2	2	429.0886535644531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.291	1	11.01	10.51	11.51	-0.28186								0	0	0	0.96121	1	3630	3630		0.45452	0.21867	1				35173	1594	22366	22487	33873	33873					0.020521672179029338
VAQPDPSGS	9	Unmodified	_VAQPDPSGS_					0	0	0			REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	857.40087890625	1	857.399938	856.392661	0.58334	0.00050016	-0.024326	-2.0857E-05	0.55902	0.0004793	857.4000441653538	22.902	0.57287	22.665	22.237	22.81	-0.23758					14	10	2	0	0	0	0.097615	1	7976	7976		58.679	16.839	1	1991800	+		35174	13751	22367	22488	33874	33874					-0.04127944304320863
VAQPDPSGS	9	Unmodified	_VAQPDPSGS_					0	0	0			REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	REV__RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	857.399938	856.392661	0.58334	0.00050016	-0.024326	-2.0857E-05	0.55902	0.0004793	857.4000441653538	22.902	0.57287	22.665	22.237	22.81	-0.23758	-0.02286	-0.0001601	NaN	58.679	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1991800	+		35175	13751	22367	22488							-0.04127944304320863
VAQRDGAAEP	10	Unmodified	_VAQRDGAAEP_					0	0	0			REV__ENST00000371520.5_1_1:53379680-53387220:-|nuORF	REV__ENST00000371520.5_1_1:53379680-53387220:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	507.7702941894531	2	507.254163	1012.49377	0.21905	0.00011111	0.21513	0.00010912	0.43417	0.00022024	507.7557771745549	19.9	0.57301	19.948	19.582	20.155	0.048107					17	10	2	0	0	0	0.27227	1	6789	6789		20.415	5.1661	1	3061200	+		35176	15167	22368	22489	33875	33875					-0.01197492601625072
VAQWQADF	8	Unmodified	_VAQWQADF_					0	0	0		SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant;SPEF2|p.I1348Nfs*12|1|0.34|ENSG00000152582|chr5:35773981-35773982|-/A|frameshift_variant;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	SPEF2|p.T1227Qfs*5|1|0.23|ENSG00000152582|chr5:35763576-35763576|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	482.7300720214844	2	482.729792	963.445031	-0.030587	-1.4765E-05	0.7246	0.00034978	0.69401	0.00033502	482.7301917474879	37.718	0.36025	37.615	37.486	37.847	-0.10318					9	6	2	0	0	0	0.81821	1	14176	14176		9.3474	0	1	26522000			35177	4157	22369	22490	33876	33876					-0.038153611707230084
VARDYRDLFHR	11	Unmodified	_VARDYRDLFHR_					0	0	0		ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-MSMS	HCT116MG_D190212_S3	3	724.381103515625	2	724.381291	1446.74803	0.55424	0.00040148	-0.87758	-0.0006357	-0.32334	-0.00023422	724.8822818233805	37.076	0.57219	36.774	36.457	37.029	-0.30127					23	10	3	0	0	0	0.7388	1	13677	13677		5.7319	0	1	8250900			35178	4859	22370	22491	33877	33877					0.04252574217525762
VARGAHGV	8	Unmodified	_VARGAHGV_					0	0	0			REV__ENST00000592078.1_1_18:47811607-47811793:-|nuORF	REV__ENST00000592078.1_1_18:47811607-47811793:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	384.23388671875	2	383.719562	765.42457	-0.12692	-4.8703E-05	0.45428	0.00017432	0.32736	0.00012561	383.71931005854634	21.967	0.41759	21.967	21.75	22.167	0					12	7	2	0	0	0	0.84759	1	7756	7756		5.7604	2.8712	1	5469800	+		35179	16697	22371	22492	33878	33878					0.032475129601380104
VARGAHGV	8	Unmodified	_VARGAHGV_					0	0	0			REV__ENST00000592078.1_1_18:47811607-47811793:-|nuORF	REV__ENST00000592078.1_1_18:47811607-47811793:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	384.23388671875	2	383.719562	765.42457	-0.12692	-4.8703E-05	0.45428	0.00017432	0.32736	0.00012561	383.71931005854634	21.967	0.41759	21.967	21.75	22.167	0					12	7	2	0	0	0	0.3238	1	7756	7756		5.7604	3.1829	1	5469800	+		35180	16697	22371	22492	33879	33879					0.032475129601380104
VARGDASPGAP	11	Unmodified	_VARGDASPGAP_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant;TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant;TNXB|p.G2152Afs*46|1|0.18|ENSG00000168477|chr6:32067750-32067750|C/-|frameshift_variant	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	HCT116MG_D190212_S4	4	499.25738525390625	2	499.256705	996.498858	0.30961	0.00015458	0.13887	6.9332E-05	0.44848	0.00022391	499.2566912932908	22.832	0.99156	22.594	22.03	23.021	-0.23758					26	18	2	0	0	0	0.68267	1	7900	7900		26.268	3.5319	1	2725200			35181	5012	22372	22493	33880	33880					0.0004681126099512767
VARKKIRV	8	Unmodified	_VARKKIRV_					0	0	0		ENST00000510042.5_1_4:169815827-169928008:-|nuORF;nc|ENSG00000145439|Q8N4T8-2|CBR4;ENSG00000145439|ENST00000306193|CBR4	ENST00000510042.5_1_4:169815827-169928008:-|nuORF	ENST00000510042.5_1_4:169815827-169928008:-|nuORF	MSMS	HCT116MG_D190212_S4	4	485.1720275878906	2	485.337636	968.660718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.112	1	12.947	12.447	13.447	-0.16496								0	0	0	0.8837	1	4100	4100		0.79363	0	1				35182	3912	22373	22494	33881	33881					0.1751344480460375
VARKRLAP	8	Unmodified	_VARKRLAP_					0	0	0			REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	455.8006286621094	2	455.800886	909.587219	0.19308	8.8008E-05	0.054748	2.4954E-05	0.24783	0.00011296	455.80075586021917	60.985	0.72598	60.836	60.527	61.253	-0.14852					16	13	2	0	0	0	0.87635	1	23641	23641		0.69038	0	1	5933800	+		35183	12687	22374	22495	33882	33882					0.1288089636212817
VARLPIHM	8	Unmodified	_VARLPIHM_					0	0	0		CYP7A1|p.G222R|1|0.14|ENSG00000167910|chr8:58496848-58496848|C/G|missense_variant	CYP7A1|p.G222R|1|0.14|ENSG00000167910|chr8:58496848-58496848|C/G|missense_variant	CYP7A1|p.G222R|1|0.14|ENSG00000167910|chr8:58496848-58496848|C/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	468.92034912109375	2	468.776022	935.537492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.157	1	12.212	11.712	12.712	0.055045								0	0	0	0.8837	1	3771	3771		0.79363	0	1				35184	634	22375	22496	33883	33883					0.06714445361831167
VARLPLLLG	9	Unmodified	_VARLPLLLG_					0	0	0		BMP1|p.N614Tfs*138|1|0.42|ENSG00000168487|chr8:22196747-22196747|C/-|frameshift_variant;nc|ENSG00000168487|P13497-4|BMP1;BMP1|p.N614Qfs*21|1|0.3|ENSG00000168487|chr8:22196746-22196747|-/C|frameshift_variant;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;BMP1|p.V817Sfs*52|1|0.34|ENSG00000168487|chr8:22207385-22207385|C/-|frameshift_variant;BMP1|p.G195Afs*56|1|0.55|ENSG00000168487|chr8:22176989-22176989|G/-|frameshift_variant;nc|ENSG00000168487|P13497-3|BMP1;ENSG00000168487|ENST00000306385|BMP1	BMP1|p.N614Tfs*138|1|0.42|ENSG00000168487|chr8:22196747-22196747|C/-|frameshift_variant;ENSG00000168487|ENST00000306385|BMP1	ENSG00000168487|ENST00000306385|BMP1	MSMS	HCT116MG_D190212_S2	2	476.3219909667969	2	476.32112	950.627687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.29	1	62.154	61.654	62.654	-0.13585								0	0	0	0.77025	1	24141	24141		0	0	1				35185	269;5014	22376	22497	33884	33884					0.1503981796191738
VARRAAVS	8	Unmodified	_VARRAAVS_					0	0	0		ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000484252.5_1_2:128398362-128399806:-|nuORF	ENST00000466410.5_1_2:128398362-128421974:-|nuORF	ENST00000466410.5_1_2:128398362-128421974:-|nuORF	MSMS	HCT116MG_D190212_S4	4	415.26336669921875	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.597	1	61.343	60.843	61.843	-0.25457								0	0	0	0.8837	1	23242	23242		0.69038	0	1				35186	8108	22377	22498	33885	33885					0.07187757539986706
VARRSGAP	8	Unmodified	_VARRSGAP_					0	0	0		ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	MSMS	HCT116MG_D190212_S4	4	407.2383728027344	2	407.238119	812.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.218	1	24.938	24.438	25.438	-0.27958								0	0	0	0.8837	1	8925	8925		6.3541	0.59368	1				35187	6304	22378	22499	33886	33886					0.047951845058946674
VASDLLEM	8	Unmodified	_VASDLLEM_					0	0	0			REV__ENSG00000138061|ENST00000610745|CYP1B1	REV__ENSG00000138061|ENST00000610745|CYP1B1	MSMS	HCT116MG_D190212_S1	1	439.2189636230469	2	439.220411	876.426269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.757	1	30.757	30.257	31.257	0								0	0	0	0.8837	1	11292	11292		14.582	0	1		+		35188	12208	22379	22500	33887	33887					-0.016886588567899707
VASEAVAP	8	Unmodified	_VASEAVAP_					0	0	0			REV__ENSG00000166743|ENST00000520010|ACSM1	REV__ENSG00000166743|ENST00000520010|ACSM1	MULTI-MSMS	HCT116MG_D190212_S2	2	743.3922119140625	1	743.393396	742.386119	1.3828	0.001028	-0.12404	-9.2213E-05	1.2588	0.00093576	743.3933554205204	36	0.20671	35.872	35.761	35.967	-0.12799					6	3	2	0	0	0	0.21411	1	13469	13469		70.865	7.3017	1	20574000	+		35189	13120	22380	22501	33888	33888					0.004621625349500391
VASEAVAP	8	Unmodified	_VASEAVAP_					0	0	0			REV__ENSG00000166743|ENST00000520010|ACSM1	REV__ENSG00000166743|ENST00000520010|ACSM1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	743.393396	742.386119	1.3828	0.001028	-0.12404	-9.2213E-05	1.2588	0.00093576	743.3933554205204	36	0.20671	35.872	35.761	35.967	-0.12799	0.046785	-0.00031618	NaN	70.865	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20574000	+		35190	13120	22380	22501							0.004621625349500391
VASEAVAP	8	Unmodified	_VASEAVAP_					0	0	0			REV__ENSG00000166743|ENST00000520010|ACSM1	REV__ENSG00000166743|ENST00000520010|ACSM1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	743.393396	742.386119	0.12374	9.1984E-05	0.38839	0.00028872	0.51212	0.00038071	743.3934865736874	36.079	0.26017	35.779	35.678	35.938	-0.30042	-0.046785	6.4752E-05	NaN	70.865	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2636600	+		35191	13120	22380	22501							0.004621625349500391
VASFPKKQE	9	Unmodified	_VASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	HCT116MG_D190212_S1	1	517.2877197265625	2	517.287474	1032.5604	0.26583	0.00013751	0.30316	0.00015682	0.56899	0.00029433	517.2875258229836	19.209	0.57257	19.209	18.975	19.548	0					17	10	2	0	0	0	0.13424	1	6678	6678		51.415	19.11	1	2950500			35192	2356	22381	22502	33889	33889					0.04541742960304873
VASFPKKQE	9	Unmodified	_VASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7901611328125	2	517.287474	1032.5604	0.21058	0.00010893	0.084108	4.3508E-05	0.29469	0.00015244	517.2874242182136	19.865	0.88416	19.49	19.143	20.027	-0.37503					29	16	2	0	0	0	0.0096585	1	6861	6861		114.19	56.464	1	13743000			35193	2356	22381	22502	33890	33890					0.04541742960304873
VASGDRPTAP	10	Unmodified	_VASGDRPTAP_					0	0	0			REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	REV__AGL|p.N1304Kfs*7|1|0.38|ENSG00000162688|chr1:99912471-99912472|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	485.75146484375	2	485.751256	969.487959	0.20623	0.00010018	0.25906	0.00012584	0.4653	0.00022602	485.75142733424946	20.771	0.20884	20.392	20.289	20.498	-0.37949					7	3	3	0	0	0	0.28496	1	7305	7305		25.399	25.399	1	5171100	+		35194	9885	22382	22503	33891	33891					0.0019940888671499124
VASGTISYQA	10	Unmodified	_VASGTISYQA_					0	0	0			REV__SNAP91|p.V17I|1|0.37|ENSG00000065609|chr6:83707879-83707879|C/T|missense_variant	REV__SNAP91|p.V17I|1|0.37|ENSG00000065609|chr6:83707879-83707879|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	498.75360107421875	2	498.753464	995.492375	0.51077	0.00025475	0.017115	8.536E-06	0.52788	0.00026328	498.7533050184229	25.648	0.2081	25.52	25.39	25.598	-0.12795					6	3	2	0	0	0	0.64004	1	9197	9197		25.399	2.663	1	5902200	+		35195	17534	22383	22504	33892	33892					-0.0055512669038080276
VASHPEPPGEP	11	Unmodified	_VASHPEPPGEP_					0	0	0			REV__ENST00000155840.9_1_11:2608804-2610073:+|nuORF	REV__ENST00000155840.9_1_11:2608804-2610073:+|nuORF	MSMS	HCT116MG_D190212_S4	4	558.770263671875	2	558.769645	1115.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.123	1	41.747	41.247	42.247	-0.37565								0	0	0	0.93552	1	15470	15470		13.906	1.3745	1		+		35196	14490	22384	22505	33893	33893					-0.028403392873769917
VASIDRRRK	9	Unmodified	_VASIDRRRK_					0	0	0		nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	MSMS	HCT116MG_D190212_S3	3	367.5606994628906	3	367.559751	1099.65742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.747	1	11.802	11.302	12.302	0.055045								0	0	0	0.76995	1	3619	3619		1.0715	0	1				35197	1070	22385	22506	33894	33894					0.1115814995994242
VASISKRR	8	Unmodified	_VASISKRR_					0	0	0			REV__ENST00000589453.5_1_19:9875654-9879114:-|nuORF	REV__ENST00000589453.5_1_19:9875654-9879114:-|nuORF	MSMS	HCT116MG_D190212_S1	1	458.7870788574219	2	458.787976	915.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.84	1	50.84	50.34	51.34	0								0	0	0	0.8837	1	19409	19409		4.756	0	1		+		35198	16680	22386	22507	33895	33895					0.10024002119848774
VASISKRR	8	Unmodified	_VASISKRR_					0	0	0			REV__ENST00000589453.5_1_19:9875654-9879114:-|nuORF	REV__ENST00000589453.5_1_19:9875654-9879114:-|nuORF	MSMS	HCT116MG_D190212_S4	4	458.78765869140625	2	458.787976	915.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.462	1	54.138	53.638	54.638	-0.32349								0	0	0	0.8837	1	20364	20364		2.3027	0	1		+		35199	16680	22386	22507	33896	33896					0.10024002119848774
VASLFSWITGY	11	Unmodified	_VASLFSWITGY_					0	0	0			REV__tr|U7SUF2|U7SUF2_FUSNUAzaleucineresistanceproteinAzlCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01400PE=3SV=1	REV__tr|U7SUF2|U7SUF2_FUSNUAzaleucineresistanceproteinAzlCOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01400PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	622.3190307617188	2	622.321514	1242.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.524	1	36.407	35.907	36.907	-0.11767								0	0	0	0.9387	1	13661	13661		12.241	1.4411	1		+		35200	17830	22387	22508	33897	33897					0.016865678202748313
VASLRGRKRP	10	Unmodified	_VASLRGRKRP_					0	0	0			REV__ENST00000358738.3_1_14:64971326-64971620:+|nuORF	REV__ENST00000358738.3_1_14:64971326-64971620:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	570.359130859375	2	570.359631	1138.70471	0.58634	0.00033442	-0.92125	-0.00052544	-0.33491	-0.00019102	570.8604916079354	52.073	0.7767	51.727	51.363	52.14	-0.34538					26	14	3	0	0	0	0.87945	1	19427	19427		3.5965	3.5965	1	13745000	+		35201	15063	22388	22509	33898	33898					0.14090429230918744
VASLRGRKRP	10	Unmodified	_VASLRGRKRP_					0	0	0			REV__ENST00000358738.3_1_14:64971326-64971620:+|nuORF	REV__ENST00000358738.3_1_14:64971326-64971620:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	570.359631	1138.70471	0.46233	0.00026369	-1.0677	-0.00060897	-0.60537	-0.00034528	570.358865536117	51.651	1.0814	51.467	51.064	52.145	-0.18368	-0.13022	-3.0364E-05	NaN	3.5965	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72973000	+		35202	15063	22388	22509							0.14090429230918744
VASREAKL	8	Unmodified	_VASREAKL_					0	0	0		ENST00000358739.4_1_6:27775991-27776072:+|nuORF	ENST00000358739.4_1_6:27775991-27776072:+|nuORF	ENST00000358739.4_1_6:27775991-27776072:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	437.2493591308594	2	437.261259	872.507966	0.23243	0.00010163	-0.45155	-0.00019744	-0.21911	-9.581E-05	437.26115113313836	22.346	0.15528	21.961	21.843	21.999	-0.3852					4	2	2	0	0	0	0.31507	1	7894	7894		5.2307	0	1	9137800			35203	7324	22389	22510	33899	33899					0.06661204617319072
VASVGHGV	8	Unmodified	_VASVGHGV_					0	0	0		SUSD6|p.R58Gfs*7|1|0.22|ENSG00000100647|chr14:69703441-69703441|C/-|frameshift_variant;SUSD6|p.L44Pfs*33|1|0.41|ENSG00000100647|chr14:69703398-69703399|-/C|frameshift_variant;ENST00000556993.1_1_14:70125309-70170323:+|nuORF;ENSG00000100647|ENST00000342745|SUSD6	SUSD6|p.R58Gfs*7|1|0.22|ENSG00000100647|chr14:69703441-69703441|C/-|frameshift_variant	SUSD6|p.R58Gfs*7|1|0.22|ENSG00000100647|chr14:69703441-69703441|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	363.20062255859375	2	363.20067	724.386788	-0.30983	-0.00011253	0.30718	0.00011157	-0.0026549	-9.6425E-07	363.2007298356462	17.344	0.93655	17.425	16.597	17.534	0.081356					23	17	2	0	0	0	0.76257	1	5780	5780		15.768	0	1	2176200			35204	1723	22390	22511	33900	33900					0.013570019746680373
VATDRGKPP	9	Unmodified	_VATDRGKPP_					0	0	0		nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000253305|ENST00000520790|PCDHGB6	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MULTI-MSMS	HCT116MG_D190212_S2	2	470.7641296386719	2	470.764166	939.513779	0.33397	0.00015722	-0.24068	-0.0001133	0.093294	4.392E-05	470.76405255003584	22.566	0.77913	22.18	21.531	22.31	-0.3852					26	14	2	0	0	0	0.30117	1	7831	7831		30.637	3.0077	1	34321000			35205	6584	22391	22512	33901	33901					0.04160303129003751
VATDRRPFWH	10	Unmodified	_VATDRRPFWH_					0	0	0			REV__ENST00000335870.6_1_7:148951526-148951583:+|nuORF	REV__ENST00000335870.6_1_7:148951526-148951583:+|nuORF	MSMS	HCT116MG_D190212_S4	4	428.4853210449219	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.377	1	12.208	11.708	12.708	-0.16903								0	0	0	0.97045	1	3840	3840		0.15932	0	1		+		35206	14950	22392	22513	33902	33902					0.021858460973362526
VATDRRPFWH	10	Unmodified	_VATDRRPFWH_					0	0	0			REV__ENST00000335870.6_1_7:148951526-148951583:+|nuORF	REV__ENST00000335870.6_1_7:148951526-148951583:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.727	1	12.558	12.058	13.058	-0.16903								0	0	0	0.97045	1	3963	3963		0.15932	0	1		+		35207	14950	22392	22513	33903	33903					0.021858460973362526
VATEEMEK	8	Unmodified	_VATEEMEK_					0	0	0		ENST00000506725.1_1_5:36608525-36613071:+|nuORF	ENST00000506725.1_1_5:36608525-36613071:+|nuORF	ENST00000506725.1_1_5:36608525-36613071:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	936.434326171875	1	936.434274	935.426998	0.30026	0.00028117	0.65665	0.00061491	0.95691	0.00089608	936.4349560566212	36.16	0.26023	35.86	35.729	35.99	-0.30042					6	4	2	0	0	0	0.50777	1	13383	13383		40.449	6.3461	1	4431500			35208	8465	22393	22514	33904	33904					-0.04329864207727496
VATGPEVP	8	Unmodified	_VATGPEVP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;TTN|p.I24998Nfs*2|1|0.35|ENSG00000155657|chr2:178566216-178566217|-/T|frameshift_variant;TTN|p.K26626Nfs*34|1|0.34|ENSG00000155657|chr2:178561331-178561331|T/-|frameshift_variant;TTN|p.V27442Cfs*4|1|0.05|ENSG00000155657|chr2:178558107-178558108|-/A|frameshift_variant;TTN|p.L28648Sfs*6|1|0.24|ENSG00000155657|chr2:178552035-178552036|-/A|frameshift_variant;TTN|p.K29707Sfs*48|1|0.16|ENSG00000155657|chr2:178547583-178547583|T/-|frameshift_variant;TTN|p.E20392Dfs*6|1|0.04|ENSG00000155657|chr2:178582357-178582358|-/TTTAAAATTA|frameshift_variant;TTN|p.G19920Afs*12|1|0.42|ENSG00000155657|chr2:178584961-178584961|G/-|frameshift_variant;TTN|p.D20259Rfs*40|1|0.44|ENSG00000155657|chr2:178583105-178583106|-/T|frameshift_variant;TTN|p.E20392Kfs*4|1|0.02|ENSG00000155657|chr2:178582359-178582360|-/TTTT|frameshift_variant;TTN|p.P22810Hfs*10|1|0.03|ENSG00000155657|chr2:178572780-178572781|-/AAAT|frameshift_variant;TTN|p.D21555Ifs*6|1|0.33|ENSG00000155657|chr2:178576659-178576659|G/-|frameshift_variant;TTN|p.G22029Efs*22|2|0.13|ENSG00000155657|chr2:178575125-178575125|T/-|frameshift_variant;TTN|p.V22573Cfs*4|2|0.31|ENSG00000155657|chr2:178573492-178573492|C/-|frameshift_variant;TTN|p.F18705Lfs*8|1|0.37|ENSG00000155657|chr2:178590687-178590687|A/-|frameshift_variant;TTN|p.P16126Rfs*3|1|0.25|ENSG00000155657|chr2:178607301-178607302|TG/-|frameshift_variant;TTN|p.N15496Ifs*16|1|0.09|ENSG00000155657|chr2:178610116-178610116|T/-|frameshift_variant;TTN|p.N13487Tfs*49|1|0.34|ENSG00000155657|chr2:178621335-178621335|T/-|frameshift_variant;TTN|p.E15132Sfs*22|1|0.27|ENSG00000155657|chr2:178612094-178612094|C/-|frameshift_variant;TTN|p.G14712Dfs*11|1|0.37|ENSG00000155657|chr2:178614341-178614341|G/-|frameshift_variant;TTN|p.K14271Qfs*5|1|0.02|ENSG00000155657|chr2:178617351-178617352|-/G|frameshift_variant;TTN|p.V13823*|1|0.28|ENSG00000155657|chr2:178620027-178620027|C/-|frameshift_variant;TTN|p.G12742Vfs*2|1|0.05|ENSG00000155657|chr2:178632983-178632983|C/-|frameshift_variant;TTN|p.A12650Gfs*4|1|0.4|ENSG00000155657|chr2:178633489-178633490|-/T|frameshift_variant;TTN|p.K11556Sfs*15|1|0.39|ENSG00000155657|chr2:178652287-178652287|T/-|frameshift_variant;TTN|p.N6458Mfs*74|1|0.44|ENSG00000155657|chr2:178725998-178725998|T/-|frameshift_variant;TTN|p.V1964Wfs*14|1|0.32|ENSG00000155657|chr2:178775975-178775975|T/-|frameshift_variant;TTN|p.N2114Mfs*25|1|0.05|ENSG00000155657|chr2:178775523-178775523|T/-|frameshift_variant;TTN|p.D2189Tfs*17|1|0.23|ENSG00000155657|chr2:178775147-178775147|T/-|frameshift_variant;TTN|p.S2859Qfs*30|1|0.21|ENSG00000155657|chr2:178770127-178770127|G/-|frameshift_variant;TTN|p.I3592Lfs*36|1|0.25|ENSG00000155657|chr2:178741508-178741508|T/-|frameshift_variant;TTN|p.P4036Qfs*14|1|0.19|ENSG00000155657|chr2:178740175-178740175|G/-|frameshift_variant;TTN|p.T4116Sfs*25|1|0.04|ENSG00000155657|chr2:178739937-178739938|-/CTATTATATATGAGGAA|frameshift_variant;TTN|p.M4154Nfs*4|1|0.21|ENSG00000155657|chr2:178739821-178739822|-/T|frameshift_variant;TTN|p.K4988Ifs*4|1|0.06|ENSG00000155657|chr2:178733381-178733382|-/GAAAATGATG|frameshift_variant;TTN|p.S5235Hfs*25|1|0.06|ENSG00000155657|chr2:178732315-178732316|-/ATATATG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN;TTN|p.A7105Cfs*8|1|0.32|ENSG00000155657|chr2:178722523-178722524|-/A|frameshift_variant;TTN|p.W5728Mfs*3|1|0.07|ENSG00000155657|chr2:178730267-178730268|-/T|frameshift_variant;TTN|p.L7142*|1|0.06|ENSG00000155657|chr2:178722407-178722411|TCTTA/-|frameshift_variant;TTN|p.N7648Tfs*27|1|0.32|ENSG00000155657|chr2:178719598-178719598|T/-|frameshift_variant;TTN|p.N8964Tfs*27|1|0.11|ENSG00000155657|chr2:178711988-178711988|T/-|frameshift_variant;TTN|p.D9026Afs*9|1|0.26|ENSG00000155657|chr2:178711205-178711208|CTGT/-|frameshift_variant;TTN|p.E9224Gfs*8|1|0.04|ENSG00000155657|chr2:178709697-178709698|-/TCTTATGATATCTTGAC|frameshift_variant;TTN|p.I9225Cfs*34|1|0.06|ENSG00000155657|chr2:178709695-178709696|-/ATATCCATGAGCA|frameshift_variant;TTN|p.I10495Nfs*4|1|0.37|ENSG00000155657|chr2:178685288-178685289|-/T|frameshift_variant;TTN|p.V10632Yfs*16|1|0.16|ENSG00000155657|chr2:178683254-178683254|T/-|frameshift_variant;TTN|p.V11008Sfs*13|1|0.33|ENSG00000155657|chr2:178678146-178678147|-/T|frameshift_variant;TTN|p.K10923Rfs*104|2|0.23|ENSG00000155657|chr2:178679362-178679362|T/-|frameshift_variant;TTN|p.V11345Ffs*4|1|0.4|ENSG00000155657|chr2:178672044-178672044|T/-|frameshift_variant;TTN|p.K11381Nfs*25|1|0.07|ENSG00000155657|chr2:178671133-178671133|T/-|frameshift_variant;TTN|p.L1709Tfs*7|2|0.3|ENSG00000155657|chr2:178776739-178776740|-/T|frameshift_variant;TTN|p.A532Dfs*22|1|0.04|ENSG00000155657|chr2:178792139-178792140|-/TTGTATAT|frameshift_variant;TTN|p.P1407Lfs*5|1|0.18|ENSG00000155657|chr2:178777964-178777965|-/GA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S1	1	385.2072448730469	2	385.208161	768.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.553	1	30.553	30.053	31.053	0								0	0	0	0.80194	1	11210	11210		22.453	0	1				35209	4258;9506	22394	22515	33905	33905					0.008304490520117724
VATILAPL	8	Unmodified	_VATILAPL_					0	0	0			REV__nc|ENSG00000217128|Q8TF40-2|FNIP1	REV__nc|ENSG00000217128|Q8TF40-2|FNIP1	MSMS	HCT116MG_D190212_S3	3	399.2602233886719	2	399.260197	796.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.029	1	32.743	32.243	33.243	-0.28511								0	0	0	0.8837	1	12126	12126		11.114	0	1		+		35210	14287	22395	22516	33906	33906					0.09944775879523604
VATSFLPY	8	Unmodified	_VATSFLPY_					0	0	0		RPGR|p.T389_F390insS|1|0.05|ENSG00000156313|chrX:38299033-38299034|-/ACT|inframe_insertion	RPGR|p.T389_F390insS|1|0.05|ENSG00000156313|chrX:38299033-38299034|-/ACT|inframe_insertion	RPGR|p.T389_F390insS|1|0.05|ENSG00000156313|chrX:38299033-38299034|-/ACT|inframe_insertion	MSMS	HCT116MG_D190212_S3	3	449.2393798828125	2	449.239461	896.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.61	1	28.404	27.904	28.904	-0.20593								0	0	0	0.8837	1	10361	10361		11.114	0	1				35211	18124	22396	22517	33907	33907					0.011995951201811295
VATVIGLP	8	Unmodified	_VATVIGLP_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MSMS	HCT116MG_D190212_S4	4	385.2444152832031	2	385.244547	768.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.048	1	33.664	33.164	34.164	-0.38426								0	0	0	0.8837	1	12417	12417		15.768	0	1				35212	9680	22397	22518	33908	33908					0.0810420284542488
VATVLPGL	8	Unmodified	_VATVLPGL_					0	0	0			REV__ENST00000532450.5_1_11:64812392-64813763:-|nuORF	REV__ENST00000532450.5_1_11:64812392-64813763:-|nuORF	MSMS	HCT116MG_D190212_S1	1	385.2445068359375	2	385.244547	768.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.463	1	29.463	28.963	29.963	0								0	0	0	0.8837	1	10769	10769		15.768	0	1		+		35213	16323	22398	22519	33909	33909					0.0810420284542488
VATVPVIV	8	Unmodified	_VATVPVIV_					0	0	0		CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant;CFTR|p.G1208Afs*3|1|0.3|ENSG00000001626|chr7:117627672-117627672|G/-|frameshift_variant;CFTR|p.L1258Ffs*7|1|0.26|ENSG00000001626|chr7:117642487-117642488|-/T|frameshift_variant;CFTR|p.S1297Lfs*31|1|0.28|ENSG00000001626|chr7:117652852-117652852|T/-|frameshift_variant;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR	CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	CFTR|p.E1044Dfs*20|1|0.04|ENSG00000001626|chr7:117610661-117610662|-/TCAAAGAAAAC|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	399.2602844238281	2	399.260197	796.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.092	1	37.709	37.209	38.209	-0.38283								0	0	0	0.8837	1	13947	13947		6.3541	0	1				35214	421	22399	22520	33910	33910					0.09944775879534973
VATVTVLLK	9	Unmodified	_VATVTVLLK_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-4|SYT14	REV__nc|ENSG00000143469|Q8NB59-4|SYT14	MSMS	HCT116MG_D190212_S4	4	472.3113708496094	2	472.312961	942.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.254	1	44.882	44.382	45.382	-0.37266								0	0	0	0.76694	1	16687	16687		11.64	3.7301	1		+		35215	12394	22400	22521	33911	33911					0.13776692005149016
VAVAAPPS	8	Unmodified	_VAVAAPPS_					0	0	0			REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	711.404052734375	1	711.403566	710.39629	1.26	0.00089636	0.13522	9.6198E-05	1.3952	0.00099255	711.4036494922909	34.48	0.30949	34.305	34.175	34.485	-0.17512					8	5	2	0	0	0	0.13911	1	12837	12837		86.121	11.725	1	17017000	+		35216	9878	22401	22522	33912	33912					0.029507702601790697
VAVAAPPS	8	Unmodified	_VAVAAPPS_					0	0	0			REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	711.40380859375	1	711.403566	710.39629	0.51985	0.00036982	0.4157	0.00029573	0.93555	0.00066555	711.4037222100554	34.556	0.46748	34.259	34.077	34.544	-0.29707					10	8	2	0	0	0	0.11846	1	12748	12748		90.836	0	1	8236600	+		35217	9878	22401	22522	33913	33913					0.029507702601790697
VAVAAPPS	8	Unmodified	_VAVAAPPS_					0	0	0			REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	711.402099609375	1	711.403566	710.39629	0.69738	0.00049612	-0.86678	-0.00061663	-0.1694	-0.00012051	711.402777618465	34.742	0.35526	34.356	34.187	34.542	-0.38597					10	6	2	0	0	0	0.11846	1	12689	12689		90.836	0	1	5994800	+		35218	9878	22401	22522	33914	33914					0.029507702601790697
VAVAAPPS	8	Unmodified	_VAVAAPPS_					0	0	0			REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	711.403566	710.39629	1.26	0.00089636	0.13522	9.6198E-05	1.3952	0.00099255	711.4036494922909	34.48	0.30949	34.305	34.175	34.485	-0.17512	-0.001165	0.00024454	NaN	90.836	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17017000	+		35219	9878	22401	22522							0.029507702601790697
VAVAAPPS	8	Unmodified	_VAVAAPPS_					0	0	0			REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	711.403566	710.39629	0.51985	0.00036982	0.4157	0.00029573	0.93555	0.00066555	711.4037222100554	34.556	0.46748	34.259	34.077	34.544	-0.29707	-0.047984	0.00044408	NaN	90.836	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8236600	+		35220	9878	22401	22522							0.029507702601790697
VAVAAPPS	8	Unmodified	_VAVAAPPS_					0	0	0			REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	711.403566	710.39629	0.69738	0.00049612	-0.86678	-0.00061663	-0.1694	-0.00012051	711.402777618465	34.742	0.35526	34.356	34.187	34.542	-0.38597	0.049149	-0.00046829	NaN	90.836	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5994800	+		35221	9878	22401	22522							0.029507702601790697
VAVAAPRPP	9	Unmodified	_VAVAAPRPP_					0	0	0			REV__ENSG00000153767|ENST00000283875|GTF2E1	REV__ENSG00000153767|ENST00000283875|GTF2E1	MULTI-SECPEP	HCT116MG_D190212_S1	1	439.2189636230469	2	439.266345	876.518136	0.1455	6.3911E-05	0.036841	1.6183E-05	0.18234	8.0094E-05	439.266118975731	30.49	0.98842	30.49	30.296	31.284	0					27	18	3	0	0	0	0.24195	1	11292	11292		12.532	0	1	7742000	+		35222	12657	22402	22523	33915	33915					0.07493812342556794
VAVGVCWWLP	10	Unmodified	_VAVGVCWWLP_					0	0	0		LRFN4|p.G524Vfs*100|1|0.26|ENSG00000173621|chr11:66859853-66859853|G/-|frameshift_variant	LRFN4|p.G524Vfs*100|1|0.26|ENSG00000173621|chr11:66859853-66859853|G/-|frameshift_variant	LRFN4|p.G524Vfs*100|1|0.26|ENSG00000173621|chr11:66859853-66859853|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	565.2401733398438	2	565.296788	1128.57902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.033	1	35.732	35.232	36.232	-0.30042								0	0	0	0.93576	1	13300	13300		7.9102	0.3012	1				35223	9301	22403	22524	33916	33916					0.019875813304906842
VAVNYSQP	8	Unmodified	_VAVNYSQP_					0	0	0		C1RL|p.L351Wfs*35|2|0.29|ENSG00000139178|chr12:7096804-7096804|G/-|frameshift_variant;ENSG00000139178|ENST00000266542|C1RL	C1RL|p.L351Wfs*35|2|0.29|ENSG00000139178|chr12:7096804-7096804|G/-|frameshift_variant	C1RL|p.L351Wfs*35|2|0.29|ENSG00000139178|chr12:7096804-7096804|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	439.2242431640625	2	439.224342	876.434132	0.27732	0.00012181	-0.23429	-0.00010291	0.043029	1.89E-05	439.22415920724745	21.566	0.3113	21.348	21.166	21.478	-0.21832					7	5	2	0	0	0	0.69862	1	7489	7489		23.148	1.4018	1	1491800			35224	291	22404	22525	33917	33917					-0.009027635450024718
VAVPSDGQP	9	Unmodified	_VAVPSDGQP_					0	0	0			REV__ENST00000464809.5_1_12:111052207-111065748:+|nuORF	REV__ENST00000464809.5_1_12:111052207-111065748:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	869.4367065429688	1	869.436323	868.429047	0.95444	0.00082983	0.034441	2.9944E-05	0.98888	0.00085977	869.4362890803142	29.659	0.423	29.422	29.239	29.662	-0.23655					14	7	2	0	0	0	0.12994	1	10791	10791		52.268	1.4133	1	4418000	+		35225	15813	22405	22526	33918	33918					-0.010430674076133073
VAVPSDGQP	9	Unmodified	_VAVPSDGQP_					0	0	0			REV__ENST00000464809.5_1_12:111052207-111065748:+|nuORF	REV__ENST00000464809.5_1_12:111052207-111065748:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	869.4381713867188	1	869.436323	868.429047	0.74015	0.00064352	-0.065739	-5.7156E-05	0.67441	0.00058636	869.4361848733408	29.772	0.46798	29.423	29.189	29.657	-0.34921					14	8	2	0	0	0	0.14972	1	10752	10752		48.346	6.2513	1	5579500	+		35226	15813	22405	22526	33919	33919					-0.010430674076133073
VAVPSDGQP	9	Unmodified	_VAVPSDGQP_					0	0	0			REV__ENST00000464809.5_1_12:111052207-111065748:+|nuORF	REV__ENST00000464809.5_1_12:111052207-111065748:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	869.436323	868.429047	0.95444	0.00082983	0.034441	2.9944E-05	0.98888	0.00085977	869.4362890803142	29.659	0.423	29.422	29.239	29.662	-0.23655	-0.00032724	4.4939E-05	NaN	52.268	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4418000	+		35227	15813	22405	22526							-0.010430674076133073
VAVPSDGQP	9	Unmodified	_VAVPSDGQP_					0	0	0			REV__ENST00000464809.5_1_12:111052207-111065748:+|nuORF	REV__ENST00000464809.5_1_12:111052207-111065748:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	869.436323	868.429047	0.74015	0.00064352	-0.065739	-5.7156E-05	0.67441	0.00058636	869.4361848733408	29.772	0.46798	29.423	29.189	29.657	-0.34921	0.00032724	-4.2161E-05	NaN	52.268	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5579500	+		35228	15813	22405	22526							-0.010430674076133073
VAVSEPNAP	9	Unmodified	_VAVSEPNAP_					0	0	0		ENST00000343820.9_1_18:3449712-3450399:+|nuORF	ENST00000343820.9_1_18:3449712-3450399:+|nuORF	ENST00000343820.9_1_18:3449712-3450399:+|nuORF	MSMS	HCT116MG_D190212_S2	2	442.2283630371094	2	442.229625	882.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.14	1	30.873	30.373	31.373	-0.26704								0	0	0	0.76641	1	11476	11476		13.508	0	1				35229	7248	22406	22527	33920	33920					-0.0012278089056962926
VAVTASPILDG	11	Unmodified	_VAVTASPILDG_					0	0	0			REV__ENST00000553077.5_1_16:68224815-68224878:+|nuORF	REV__ENST00000553077.5_1_16:68224815-68224878:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	521.7933959960938	2	521.792589	1041.57063	0.13457	7.0219E-05	1.1756	0.00061342	1.3102	0.00068364	521.7934584515103	37.74	0.30861	37.637	37.486	37.795	-0.10318					10	5	3	0	0	0	0.70073	1	14170	14170		21.537	4.4241	1	61040000	+		35230	16435	22407	22528	33921	33921					0.0515030589485832
VAVTAVLFSL	10	Unmodified	_VAVTAVLFSL_					0	0	0			REV__ENSG00000100292|ENST00000216117|HMOX1	REV__ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	HCT116MG_D190212_S2	2	1019.6141357421875	1	1019.61356	1018.60628	0.8109	0.00082681	-0.23939	-0.00024409	0.57151	0.00058272	1019.6134940797939	55.592	0.20731	55.406	55.276	55.483	-0.18565					5	3	2	0	0	0	0.4604	1	21456	21456		37.974	8.8924	1	44474000	+		35231	11075	22408	22529	33922	33922					0.09772388142516775
VAVTRSRK	8	Unmodified	_VAVTRSRK_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	MULTI-MSMS	HCT116MG_D190212_S1	1	916.5704345703125	1	916.568675	915.561398	0.77971	0.00071465	-0.51562	-0.00047261	0.26408	0.00024205	916.5680009878147	49.776	0.41289	49.776	49.595	50.008	0					24	7	5	0	0	0	0.86564	1	18971	18971		2.5775	0	1	572520000			35232	5659	22409	22530	33923	33923					0.10024002119848774
VAVTRSRK	8	Unmodified	_VAVTRSRK_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	MULTI-MSMS	HCT116MG_D190212_S3	3	458.78814697265625	2	458.787976	915.561398	0.34382	0.00015774	-0.035345	-1.6216E-05	0.30847	0.00014152	458.7878679977102	50.831	1.5682	50.517	50.073	51.641	-0.31381					100	29	5	0	0	0	0.86564	2	19095	19095;19325		2.5775	0	1	360040000			35233	5659	22409	22530	33924;33925	33924					0.10024002119848774
VAYDLDAD	8	Unmodified	_VAYDLDAD_					0	0	0			REV__nc|ENSG00000128918|O94788-3|ALDH1A2	REV__nc|ENSG00000128918|O94788-3|ALDH1A2	MSMS	HCT116MG_D190212_S3	3	441.1971130371094	2	441.19799	880.381428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.121	1	14.199	13.699	14.699	0.077673								0	0	0	0.8837	1	4524	4524		2.5775	0	1		+		35234	17124	22410	22531	33926	33926					-0.06354766398476386
VCCCCGCE	8	Unmodified	_VCCCCGCE_					0	0	0		nc|ENSG00000118242|Q8N565-2|MREG;ENSG00000118242|ENST00000263268|MREG;MREG|p.A142Lfs*6|1|0.22|ENSG00000118242|chr2:215945661-215945661|C/-|frameshift_variant	nc|ENSG00000118242|Q8N565-2|MREG	nc|ENSG00000118242|Q8N565-2|MREG	MSMS	HCT116MG_D190212_S3	3	410.1024475097656	2	410.101755	818.188958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0248	1	5.0473	4.5473	5.5473	0.022513								0	0	0	0.8837	1	1512	1512		0.79363	0.79363	1				35235	2602	22411	22532	33927	33927					-0.2274091092932622
VCCCCGCE	8	Unmodified	_VCCCCGCE_					0	0	0		nc|ENSG00000118242|Q8N565-2|MREG;ENSG00000118242|ENST00000263268|MREG;MREG|p.A142Lfs*6|1|0.22|ENSG00000118242|chr2:215945661-215945661|C/-|frameshift_variant	nc|ENSG00000118242|Q8N565-2|MREG	nc|ENSG00000118242|Q8N565-2|MREG	MSMS	HCT116MG_D190212_S3	3	410.4306640625	2	410.101755	818.188958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.485	1	13.557	13.057	14.057	0.072306								0	0	0	0.8837	1	4279	4279		0.69038	0.69038	1				35236	2602	22411	22532	33928	33928					-0.2274091092932622
VCCSPHCC	8	Unmodified	_VCCSPHCC_					0	0	0			REV__ENSG00000171396|ENST00000390661|KRTAP4-4	REV__ENSG00000171396|ENST00000390661|KRTAP4-4	MSMS	HCT116MG_D190212_S4	4	426.31402587890625	2	426.136987	850.259421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.849	1	62.605	62.105	63.105	-0.24392								0	0	0	0.8837	1	23733	23733		0.79363	0	1		+	+	35237	13341	22412	22533	33929	33929					-0.17169869549354644
VCDVCSEY	8	Unmodified	_VCDVCSEY_					0	0	0			REV__nc|ENSG00000196189|Q9H3S1-2|SEMA4A	REV__nc|ENSG00000196189|Q9H3S1-2|SEMA4A	MSMS	HCT116MG_D190212_S3	3	459.17236328125	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8858	1	9.9184	9.4184	10.418	0.032559								0	0	0	0.8837	1	2990	2990		0.79363	0	1		+		35238	14009	22413	22534	33930	33930					-0.1308575503933298
VCFDPDCEGHR	11	Unmodified	_VCFDPDCEGHR_					0	0	0		FAM193A|p.S1031F|1|0.49|ENSG00000125386|chr4:2700137-2700137|C/T|missense_variant	FAM193A|p.S1031F|1|0.49|ENSG00000125386|chr4:2700137-2700137|C/T|missense_variant	FAM193A|p.S1031F|1|0.49|ENSG00000125386|chr4:2700137-2700137|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	639.7578125	2	639.255522	1276.49649	0.57361	0.00036668	-0.23578	-0.00015073	0.33782	0.00021596	639.7571384932149	45.276	0.26095	44.967	44.837	45.098	-0.30927					9	4	3	0	0	0	0.73536	1	16959	16959		8.7454	0	1	6792300			35239	9148	22414	22535	33931	33931					-0.13069728530649627
VCFDPDCEGHR	11	Unmodified	_VCFDPDCEGHR_					0	0	0		FAM193A|p.S1031F|1|0.49|ENSG00000125386|chr4:2700137-2700137|C/T|missense_variant	FAM193A|p.S1031F|1|0.49|ENSG00000125386|chr4:2700137-2700137|C/T|missense_variant	FAM193A|p.S1031F|1|0.49|ENSG00000125386|chr4:2700137-2700137|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	639.255522	1276.49649	0.57361	0.00036668	-0.23578	-0.00015073	0.33782	0.00021596	639.7571384932149	45.276	0.26095	44.967	44.837	45.098	-0.30927	-0.023102	3.4774E-05	NaN	8.7454	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6792300			35240	9148	22414	22535							-0.13069728530649627
VCFDPDCEGHR	11	Unmodified	_VCFDPDCEGHR_					0	0	0		FAM193A|p.S1031F|1|0.49|ENSG00000125386|chr4:2700137-2700137|C/T|missense_variant	FAM193A|p.S1031F|1|0.49|ENSG00000125386|chr4:2700137-2700137|C/T|missense_variant	FAM193A|p.S1031F|1|0.49|ENSG00000125386|chr4:2700137-2700137|C/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	639.255522	1276.49649	0.48948	0.0003129	-0.53014	-0.0003389	-0.040661	-2.5993E-05	639.2549104359862	45.386	0.20745	45.013	44.832	45.039	-0.37266	0.023102	-0.00034156	NaN	8.7454	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1927100			35241	9148	22414	22535							-0.13069728530649627
VCFDSSGKS	9	Unmodified	_VCFDSSGKS_					0	0	0			REV__nc|ENSG00000158467|Q96HN2-4|AHCYL2	REV__nc|ENSG00000158467|Q96HN2-4|AHCYL2	MSMS	HCT116MG_D190212_S1	1	465.20672607421875	2	465.205292	928.396032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.968	1	33.968	33.468	34.468	0								0	0	0	0.76923	1	12588	12588		3.5965	0	1		+		35242	12784	22415	22536	33932	33932					-0.07103017521967558
VCFSDSDT	8	Unmodified	_VCFSDSDT_					0	0	0		ENST00000273582.9_2_3:197399209-197399476:-|nuORF	ENST00000273582.9_2_3:197399209-197399476:-|nuORF	ENST00000273582.9_2_3:197399209-197399476:-|nuORF	MSMS	HCT116MG_D190212_S1	1	437.1667785644531	2	437.168376	872.322198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.782	1	42.782	42.282	43.282	0								0	0	0	0.8837	1	16145	16145		2.5775	0	1				35243	6926	22416	22537	33933	33933					-0.11906985684311167
VCHRKKTKR	9	Unmodified	_VCHRKKTKR_					0	0	0			REV__nc|ENSG00000128052|P35968-2|KDR	REV__nc|ENSG00000128052|P35968-2|KDR	MSMS	HCT116MG_D190212_S1	1	385.902099609375	3	385.901231	1154.68186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.948	1	10.948	10.448	11.448	0								0	0	0	0.77018	1	3402	3402		0.26902	0.26902	1		+		35244	17122	22417	22538	33934	33934					0.11071086841798206
VCKEPTQN	8	Unmodified	_VCKEPTQN_					0	0	0		ENSG00000151491|ENST00000281172|EPS8;ENST00000508018.2_1_12:15818678-15822386:-|nuORF	ENSG00000151491|ENST00000281172|EPS8	ENSG00000151491|ENST00000281172|EPS8	MULTI-MSMS	HCT116MG_D190212_S2	2	459.7212829589844	2	459.72111	917.427666	0.29128	0.00013391	0.035317	1.6236E-05	0.3266	0.00015015	459.7211200766683	23.879	0.31229	23.496	23.351	23.663	-0.38324					9	5	3	0	0	0	0.74197	1	8572	8572		18.146	2.2992	1	15508000			35245	4115	22418	22539	33935	33935					-0.03435024768020867
VCPALALA	8	Unmodified	_VCPALALA_					0	0	0			REV__ENST00000558590.1_1_14:103395136-103395313:+|nuORF	REV__ENST00000558590.1_1_14:103395136-103395313:+|nuORF	MSMS	HCT116MG_D190212_S3	3	379.216796875	2	379.217475	756.420396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.652	1	58.382	57.882	58.882	-0.26928								0	0	0	0.8837	1	22317	22317		2.8892	0	1		+		35246	14773	22419	22540	33936	33936					0.032442874221942475
VCPKHFFHHC	10	Unmodified	_VCPKHFFHHC_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MSMS	HCT116MG_D190212_S1	1	418.8601379394531	3	418.860156	1253.55864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.598	1	10.598	10.098	11.098	0								0	0	0	0.96937	1	3263	3263		0.13989	0.04505	1		+		35247	14173	22420	22541	33937	33937					-0.05799912600969037
VCPKPVRG	8	Unmodified	_VCPKPVRG_					0	0	0			REV__ENST00000437593.1_1_10:123687901-123710895:+|nuORF	REV__ENST00000437593.1_1_10:123687901-123710895:+|nuORF	MSMS	HCT116MG_D190212_S4	4	428.2487487792969	2	428.247098	854.479642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.032	1	36.648	36.148	37.148	-0.38486								0	0	0	0.8837	1	13575	13575		2.3027	0	1		+		35248	15633	22421	22542	33938	33938					0.046581834364019414
VCREPLVEM	9	Unmodified	_VCREPLVEM_					0	0	0			REV__ENST00000472820.1_1_9:139568206-139571631:-|nuORF	REV__ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MSMS	HCT116MG_D190212_S4	4	359.1820068359375	3	359.180672	1074.52019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.642	1	44.269	43.769	44.769	-0.37326								0	0	0	0.76897	1	16454	16454		4.5289	1.2476	1		+		35249	13259	22422	22543	33939	33939					-0.014092630261757222
VCSFDDCECY	10	Unmodified	_VCSFDDCECY_					0	0	0			REV__ITGB3|p.G649Efs*20|1|0.3|ENSG00000259207|chr17:47300507-47300507|G/-|frameshift_variant	REV__ITGB3|p.G649Efs*20|1|0.3|ENSG00000259207|chr17:47300507-47300507|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	395.1277770996094	3	395.129537	1182.36678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.507	1	64.273	63.773	64.773	-0.23412								0	0	0	0.97045	1	24273	24273		0.15932	0	1		+		35250	14410	22423	22544	33940	33940					-0.21710665924797468
VCSKFLAML	9	Unmodified	_VCSKFLAML_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	MULTI-MSMS	HCT116MG_D190212_S2	2	506.2718505859375	2	506.271924	1010.52929	0.40894	0.00020703	-0.34066	-0.00017247	0.068277	3.4567E-05	506.27175286388535	55.131	0.2028	54.943	54.816	55.019	-0.18797					5	3	2	0	0	0	0.2853	1	21272	21272		32.305	14.159	1	45940000			35251	4574	22424	22545	33941	33941					0.02445130330181655
VDAAGRKAEES	11	Unmodified	_VDAAGRKAEES_					0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	MULTI-MSMS	HCT116MG_D190212_S4	4	568.27197265625	2	566.783284	1131.55202	0.32991	0.00018699	0.31376	0.00017784	0.64368	0.00036482	566.783285028898	18.458	0.312	18.278	18.147	18.459	-0.18052					11	5	3	0	0	0	0.72373	1	6171	6171		13.042	0	1	6455900	+		35252	13997	22425	22546	33942	33942					-0.008498557469920343
VDAAHMLNHYP	11	Unmodified	_VDAAHMLNHYP_					0	0	0			REV__nc|ENSG00000154678|Q14123-2|PDE1C	REV__nc|ENSG00000154678|Q14123-2|PDE1C	MSMS	HCT116MG_D190212_S3	3	634.2982177734375	2	634.298047	1266.58154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.642	1	23.602	23.102	24.102	-0.03968								0	0	0	0.94416	1	8357	8357		9.3831	3.1773	1		+		35253	12683	22426	22547	33943	33943					-0.04108615002496663
VDAAPYWSGP	10	Unmodified	_VDAAPYWSGP_					0	0	0			REV__ENST00000390423.2_1_14:22111113-22111542:+|nuORF	REV__ENST00000390423.2_1_14:22111113-22111542:+|nuORF	MSMS	HCT116MG_D190212_S4	4	531.7398681640625	2	531.748182	1061.48181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.938	1	23.68	23.18	24.18	-0.25816								0	0	0	0.78574	1	8408	8408		30.637	3.0077	1		+		35254	15300	22427	22548	33944	33944					-0.04647109344796263
VDAATPVHREG	11	Unmodified	_VDAATPVHREG_					0	0	0			REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1	REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MULTI-SECPEP	HCT116MG_D190212_S4	4	576.2181396484375	2	576.293819	1150.57309	0.36601	0.00021093	0.030834	1.777E-05	0.39684	0.0002287	576.2938316472595	22.397	0.25961	22.169	22.039	22.299	-0.22777					7	4	2	0	0	0	0.36231	1	7738	7738		8.7454	6.2469	1	5070100	+		35255	13895	22428	22549	33945	33945					0.003821543525191373
VDADQARY	8	Unmodified	_VDADQARY_					0	0	0			REV__ENST00000485324.1_1_X:152959908-152960666:+|nuORF	REV__ENST00000485324.1_1_X:152959908-152960666:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	937.4387817382812	1	937.437386	936.430109	0.5372	0.00050359	0.33048	0.0003098	0.86768	0.0008134	937.4382894462054	21.526	0.36357	21.141	21.063	21.427	-0.38503					18	6	4	0	0	0	0.81821	1	7602	7602		9.3474	0	1	125230000	+		35256	11940	22429	22550	33946	33946					-0.040648530387102255
VDAEIRYQE	9	Unmodified	_VDAEIRYQE_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	MSMS	HCT116MG_D190212_S4	4	561.7747802734375	2	561.774928	1121.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.971	1	29.614	29.114	30.114	-0.3571								0	0	0	0.76669	1	10846	10846		12.532	0	1		+		35257	12114	22430	22551	33947	33947					-0.02060356632955518
VDAESWKT	8	Unmodified	_VDAESWKT_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	468.2269592285156	2	468.227082	934.439611	0.19608	9.1812E-05	-0.22297	-0.0001044	-0.026891	-1.2591E-05	468.2268261984111	19.804	0.25931	19.429	19.298	19.558	-0.37503					9	4	3	0	0	0	0.44484	1	6916	6916		46.021	2.1627	1	11418000			35258	2386	22431	22552	33948	33948					-0.030230847531811378
VDAIKPTKKK	10	Unmodified	_VDAIKPTKKK_					0	0	0		tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1	tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1	tr|U7SNG8|U7SNG8_FUSNUCitratelyasealphachainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01986PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	564.3597412109375	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.342	1	60.342	59.842	60.842	0								0	0	0	0.96453	1	23259	23259		1.4819	0	1				35259	18362	22432	22553	33949	33949					0.14910839845219925
VDALLKEFEQF	11	Unmodified	_VDALLKEFEQF_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	669.8492431640625	2	669.850635	1337.68672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.93	1	45.558	45.058	46.058	-0.37206								0	0	0	0.93295	1	16961	16961		15.248	5.8654	1				35260	803	22433	22554	33950	33950					0.03138204674883127
VDAVKLGLP	9	Unmodified	_VDAVKLGLP_					0	0	0		BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2	BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant	BRD2|p.G595Vfs*6|1|0.59|ENSG00000204256|chr6:32978327-32978327|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	456.2441711425781	2	456.28166	910.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.29	1	39.911	39.411	40.411	-0.37828								0	0	0	0.76781	1	14776	14776		8.5933	0	1				35261	276	22434	22555	33951	33951					0.08991545936930834
VDAVREWYRFH	11	Unmodified	_VDAVREWYRFH_					0	0	0		ENST00000540037.5_2_12:6464995-6472854:-|nuORF;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	ENST00000540037.5_2_12:6464995-6472854:-|nuORF	MSMS	HCT116MG_D190212_S3	3	739.368896484375	2	739.370392	1476.72623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.279	1	24.217	23.717	24.717	-0.061449								0	0	0	0.95581	1	8614	8614		3.2813	0.28607	1				35262	2286	22435	22556	33952	33952					0.006937694689668206
VDDDHGRQ	8	Unmodified	_VDDDHGRQ_					0	0	0			REV__ENST00000567636.1_1_18:30092508-30092649:+|nuORF	REV__ENST00000567636.1_1_18:30092508-30092649:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	941.4080810546875	1	941.407148	940.399872	0.7391	0.00069579	0.21698	0.00020426	0.95607	0.00090005	941.4072524821541	56.84	0.31565	56.661	56.528	56.844	-0.17904					11	5	3	0	0	0	0.81821	1	21963	21963		9.3474	9.3474	1	15945000	+		35263	10912	22436	22557	33953	33953					-0.07271211703891822
VDDDHGRQ	8	Unmodified	_VDDDHGRQ_					0	0	0			REV__ENST00000567636.1_1_18:30092508-30092649:+|nuORF	REV__ENST00000567636.1_1_18:30092508-30092649:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	941.407148	940.399872	0.87826	0.0008268	-0.17798	-0.00016755	0.70028	0.00065925	941.4068735465086	56.665	0.25808	56.665	56.531	56.789	0	0.0021721	-0.00014078	NaN	9.3474	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53714000	+		35264	10912	22436	22557							-0.07271211703891822
VDDLVSYVY	9	Unmodified	_VDDLVSYVY_					0	0	0			REV__MAP2K4|p.I200T|1|0.41|ENSG00000065559|chr17:12107875-12107875|T/C|missense_variant	REV__MAP2K4|p.I200T|1|0.41|ENSG00000065559|chr17:12107875-12107875|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	536.7615356445312	2	536.763497	1071.51244	0.57298	0.00030756	-2.05	-0.0011004	-1.477	-0.00079282	536.7613449743685	26.058	0.2087	26.058	25.98	26.188	0					7	3	3	0	0	0	0.30509	1	9430	9430		30.225	1.738	1	5656800	+		35265	10704	22437	22558	33954	33954					-0.02045375750412859
VDDLVSYVY	9	Unmodified	_VDDLVSYVY_					0	0	0			REV__MAP2K4|p.I200T|1|0.41|ENSG00000065559|chr17:12107875-12107875|T/C|missense_variant	REV__MAP2K4|p.I200T|1|0.41|ENSG00000065559|chr17:12107875-12107875|T/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	536.763497	1071.51244	0.57298	0.00030756	-2.05	-0.0011004	-1.477	-0.00079282	536.7613449743685	26.058	0.2087	26.058	25.98	26.188	0	-0.0034589	0.0015533	NaN	30.225	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5656800	+		35266	10704	22437	22558							-0.02045375750412859
VDDPHDDK	8	Unmodified	_VDDPHDDK_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-5|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-2|NEMF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-MSMS	HCT116MG_D190212_S4	4	940.3990478515625	1	940.400666	939.393389	-0.0079456	-7.472E-06	-1.0314	-0.00096997	-1.0394	-0.00097744	940.3992737895979	15.545	0.30232	15.383	15.263	15.565	-0.16173					6	5	2	0	0	0	0.82475	1	5049	5049		8.5933	0.68312	1	947160			35267	4782	22438	22559	33955	33955					-0.0787314965529049
VDEHGERASLH	11	Unmodified	_VDEHGERASLH_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	HCT116MG_D190212_S3	3	625.2992553710938	2	625.299633	1248.58471	0.31136	0.00019469	0.34712	0.00021706	0.65848	0.00041175	625.2995035453652	21.31	0.99606	21.329	20.698	21.694	0.018446					24	18	2	0	0	0	0.68267	1	7274	7274		26.268	11.02	1	3695100	+		35268	9934	22439	22560	33956	33956					-0.029636486241543025
VDEHGERASLH	11	Unmodified	_VDEHGERASLH_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	HCT116MG_D190212_S4	4	625.30029296875	2	625.299633	1248.58471	0.35737	0.00022346	0.39927	0.00024966	0.75663	0.00047312	625.2996740506838	21.285	0.67478	21.075	20.708	21.383	-0.20959					23	12	3	0	0	0	0.68267	1	7334	7334		26.268	9.7023	1	2391500	+		35269	9934	22439	22560	33957	33957					-0.029636486241543025
VDEHQDNVF	9	Unmodified	_VDEHQDNVF_					0	0	0		KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant;KIAA1522|p.H58Tfs*24|1|0.4|ENSG00000162522|chr1:32767894-32767894|C/-|frameshift_variant;nc|ENSG00000162522|Q9P206-4|NHSL3;nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522	KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant;nc|ENSG00000162522|Q9P206|NHSL3	KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	552.7454223632812	2	551.743628	1101.4727	0.41253	0.00022761	0.1267	6.9906E-05	0.53923	0.00029752	551.7436709868468	29.822	0.568	29.521	29.34	29.908	-0.30095					26	10	4	0	0	0	0.60654	1	10875	10875		15.847	1.9411	1	516820000			35270	9259;4529	22440	22561	33958	33958					-0.07397502701132908
VDEIFRAPL	9	Unmodified	_VDEIFRAPL_					0	0	0			REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	HCT116MG_D190212_S1	1	354.20062255859375	3	353.865958	1058.57605	0.16983	6.0096E-05	-0.049294	-1.7443E-05	0.12053	4.2653E-05	353.86584213532245	28.877	0.5771	28.877	28.535	29.112	0					22	10	3	0	0	0	0.24895	1	10509	10509		27.223	5.6331	1	15393000	+		35271	12679;17167	22441	22562	33959	33959					0.04910029477309763
VDEIFRAPL	9	Unmodified	_VDEIFRAPL_					0	0	0			REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	HCT116MG_D190212_S2	2	353.8658752441406	3	353.865958	1058.57605	-0.056213	-1.9892E-05	-0.040367	-1.4285E-05	-0.09658	-3.4176E-05	353.8658745648831	29.246	0.66601	28.93	28.504	29.17	-0.31613					27	12	4	0	0	0	0.1754	1	10677	10677		33.445	6.2217	1	97070000	+		35272	12679;17167	22441	22562	33960	33960					0.04910029477309763
VDEIFRAPL	9	Unmodified	_VDEIFRAPL_					0	0	0			REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	353.865958	1058.57605	0.16983	6.0096E-05	-0.049294	-1.7443E-05	0.12053	4.2653E-05	353.86584213532245	28.877	0.5771	28.877	28.535	29.112	0	-0.11839	1.481E-05	NaN	33.445	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15393000	+		35273	12679;17167	22441	22562							0.04910029477309763
VDEIFRAPL	9	Unmodified	_VDEIFRAPL_					0	0	0			REV__nc|ENSG00000154358|Q5VST9|OBSCN;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	353.865958	1058.57605	-0.056213	-1.9892E-05	-0.040367	-1.4285E-05	-0.09658	-3.4176E-05	353.8658745648831	29.246	0.66601	28.93	28.504	29.17	-0.31613	-0.065528	2.4286E-05	NaN	33.445	27	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97070000	+		35274	12679;17167	22441	22562							0.04910029477309763
VDEKGKVRIP	10	Unmodified	_VDEKGKVRIP_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MSMS	HCT116MG_D190212_S1	1	380.8965148925781	3	380.896029	1139.66626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.483	1	10.483	9.9833	10.983	0								0	0	0	0.97045	1	3221	3221		0.15932	0	1		+		35275	12449	22442	22563	33961	33961					0.10201078805766883
VDERCCHCS	9	Unmodified	_VDERCCHCS_					0	0	0			REV__STOX2|p.F266Ifs*11|3|0.43|ENSG00000173320|chr4:184009626-184009627|-/A|frameshift_variant;REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	MSMS	HCT116MG_D190212_S1	1	526.1919555664062	2	526.191336	1050.36812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.219	1	41.219	40.719	41.719	0								0	0	0	0.768	1	15514	15514		7.9102	0	1		+		35276	17600;13432	22443	22564	33962	33962					-0.15504987045392227
VDGPVMWPSGP	11	Unmodified	_VDGPVMWPSGP_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	MSMS	HCT116MG_D190212_S3	3	571.272705078125	2	571.270967	1140.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.486	1	21.504	21.004	22.004	0.018446								0	0	0	0.91433	1	7490	7490		18.146	5.9057	1		+		35277	17301	22444	22565	33963	33963					-0.03726207154068106
VDGPVMWPSGP	11	Unmodified	_VDGPVMWPSGP_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	MSMS	HCT116MG_D190212_S4	4	571.2728881835938	2	571.270967	1140.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.039	1	22.801	22.301	23.301	-0.23758								0	0	0	0.94416	1	8046	8046		9.3831	0	1		+		35278	17301	22444	22565	33964	33964					-0.03726207154068106
VDHLKMLQA	9	Unmodified	_VDHLKMLQA_					0	0	0		ENSG00000135547|ENST00000368364|HEY2	ENSG00000135547|ENST00000368364|HEY2	ENSG00000135547|ENST00000368364|HEY2	MSMS	HCT116MG_D190212_S4	4	352.19683837890625	3	352.19531	1053.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.947	1	45.575	45.075	46.075	-0.37206								0	0	0	0.76954	1	16968	16968		2.4985	0.65425	1				35279	3357	22445	22566	33965	33965					0.03946089462488089
VDIARDVI	8	Unmodified	_VDIARDVI_					0	0	0		nc|ENSG00000030066|Q12769|NUP160;ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769-3|NUP160	nc|ENSG00000030066|Q12769|NUP160	nc|ENSG00000030066|Q12769|NUP160	MULTI-MSMS	HCT116MG_D190212_S1	1	450.7611389160156	2	450.761092	899.507631	0.35267	0.00015897	0.21292	9.5976E-05	0.56559	0.00025495	450.76100140322364	28.42	0.21327	28.42	28.268	28.482	0					6	3	2	0	0	0	0.21275	1	10374	10374		71.134	3.0529	1	7636400			35280	965	22446	22567	33966	33966					0.053857848974644185
VDIGWSILIDL	11	Unmodified	_VDIGWSILIDL_					0	0	0			REV__nc|ENSG00000164122|Q8WWX0-2|ASB5	REV__nc|ENSG00000164122|Q8WWX0-2|ASB5	MSMS	HCT116MG_D190212_S1	1	622.3524169921875	2	622.350271	1242.68599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.232	1	54.232	53.732	54.732	0								0	0	0	0.81898	1	20790	20790		45.7	13.394	1		+		35281	12979	22447	22568	33967	33967					0.07435410025868805
VDILMRQLMI	10	Unmodified	_VDILMRQLMI_					0	0	0			REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8	REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8	MSMS	HCT116MG_D190212_S3	3	616.3471069335938	2	616.348694	1230.68284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.197	1	40.895	40.395	41.395	-0.30185								0	0	0	0.95381	1	15318	15318		3.9444	0.3479	1		+		35282	12421	22448	22569	33968	33968					0.07672120375832492
VDKDMDEAEE	10	Unmodified	_VDKDMDEAEE_					0	0	0		ENST00000470101.1_1_X:19378869-19390989:-|nuORF;nc|ENSG00000180815|Q6ZN16-2|MAP3K15;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF;ENSG00000180815|ENST00000338883|MAP3K15	ENST00000470101.1_1_X:19378869-19390989:-|nuORF	ENST00000470101.1_1_X:19378869-19390989:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	590.7384033203125	2	590.737351	1179.46015	0.58707	0.00034681	0.72695	0.00042944	1.314	0.00077625	590.7378826648188	20.583	0.31912	20.204	20.023	20.342	-0.37949					11	5	3	0	0	0	0.87059	1	7207	7207		5.7319	0.43497	1	16695000			35283	5610	22449	22570	33969	33969					-0.12240326946357527
VDKNPPPQ	8	Unmodified	_VDKNPPPQ_					0	0	0		ANKS1A|p.T318N|1|0.45|ENSG00000064999|chr6:34983366-34983366|C/A|missense_variant	ANKS1A|p.T318N|1|0.45|ENSG00000064999|chr6:34983366-34983366|C/A|missense_variant	ANKS1A|p.T318N|1|0.45|ENSG00000064999|chr6:34983366-34983366|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	447.7373352050781	2	447.737617	893.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.981	1	28.641	28.141	29.141	-0.34059								0	0	0	0.8837	1	10446	10446		15.847	1.2655	1				35284	142	22450	22571	33970	33970					0.009689253463307068
VDKPVVDGRY	10	Unmodified	_VDKPVVDGRY_					0	0	0			REV__nc|ENSG00000123416|P68363-2|TUBA1B	REV__nc|ENSG00000123416|P68363-2|TUBA1B	MSMS	HCT116MG_D190212_S1	1	574.3080444335938	2	574.308938	1146.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.55	1	41.55	41.05	42.05	0								0	0	0	0.94551	1	15648	15648		5.7319	1.203	1		+		35285	10815	22451	22572	33971	33971					0.03588513017712103
VDLKEVLKL	9	Unmodified	_VDLKEVLKL_					0	0	0			REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	REV__nc|ENSG00000073712|Q96AC1-2|FERMT2	MSMS	HCT116MG_D190212_S3	3	352.8931579589844	3	352.893625	1055.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.842	1	47.527	47.027	48.027	-0.31525								0	0	0	0.7701	1	17978	17978		0.23584	0	1		+		35286	10789	22452	22573	33972	33972					0.13344346205326474
VDLSLGVP	8	Unmodified	_VDLSLGVP_					0	0	0			REV__ENST00000228506.7_1_12:121137175-121137400:+|nuORF	REV__ENST00000228506.7_1_12:121137175-121137400:+|nuORF	MSMS	HCT116MG_D190212_S4	4	400.3785705566406	2	400.231636	798.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.912	1	58.629	58.129	59.129	-0.28305								0	0	0	0.8837	1	22156	22156		0.79363	0	1		+		35287	14540	22453	22574	33973	33973					0.04143308603158857
VDLSLVIRSGP	11	Unmodified	_VDLSLVIRSGP_					0	0	0			REV__ENSG00000145040|ENST00000273610|UCN2	REV__ENSG00000145040|ENST00000273610|UCN2	MSMS	HCT116MG_D190212_S3	3	578.2344970703125	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.27	1	33.976	33.476	34.476	-0.29419								0	0	0	0.95196	1	12608	12608		5.2969	2.0156	1		+		35288	12438	22454	22575	33974	33974					0.09477659085905543
VDNGTLLY	8	Unmodified	_VDNGTLLY_					0	0	0		ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	MSMS	HCT116MG_D190212_S2	2	447.7317810058594	2	447.732	893.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.217	1	29.932	29.432	30.432	-0.28453								0	0	0	0.36239	1	11100	11100		50.855	0	1				35289	902	22455	22576	33975	33975					-0.0015389674780408313
VDNVQCPKGP	10	Unmodified	_VDNVQCPKGP_					0	0	0		ENST00000539632.1_1_12:7636265-7637908:-|nuORF;ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7-4|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF	ENST00000539632.1_1_12:7636265-7637908:-|nuORF	ENST00000539632.1_1_12:7636265-7637908:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	528.2634887695312	2	528.760766	1055.50698	0.60678	0.00032084	0.32832	0.0001736	0.9351	0.00049445	529.2622278886344	27.627	0.25986	27.439	27.309	27.569	-0.18847					5	4	2	0	0	0	0.28114	1	9956	9956		26.884	7.6267	1	1702400			35290	5461	22456	22577	33976	33976					-0.018553778138993948
VDQLNEGH	8	Unmodified	_VDQLNEGH_					0	0	0			REV__ENSG00000269113|ENST00000606738|TRABD2B	REV__ENSG00000269113|ENST00000606738|TRABD2B	MSMS	HCT116MG_D190212_S4	4	455.7406921386719	2	456.214506	910.414459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.126	1	21.898	21.398	22.398	-0.22777								0	0	0	0.8837	1	7679	7679		15.847	3.3156	1		+		35291	14434	22457	22578	33977	33977					-0.044331395557492215
VDRKQGEQP	9	Unmodified	_VDRKQGEQP_					0	0	0			REV__TRIM22|p.K103Nfs*31|2|0.31|ENSG00000132274|chr11:5696535-5696535|A/-|frameshift_variant	REV__TRIM22|p.K103Nfs*31|2|0.31|ENSG00000132274|chr11:5696535-5696535|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	528.7750244140625	2	528.775262	1055.53597	0.37544	0.00019853	-0.45302	-0.00023955	-0.077577	-4.1021E-05	528.7750622275618	18.125	0.20874	18.125	18.037	18.246	0					5	3	2	0	0	0	0.22946	1	6238	6238		38.176	9.094	1	1900600	+		35292	11985	22458	22579	33978	33978					0.0104248280676984
VDRNGTTAY	9	Unmodified	_VDRNGTTAY_					0	0	0		ENSG00000026508|ENST00000428726|CD44;nc|ENSG00000026508|P16070-5|CD44;nc|ENSG00000026508|P16070-7|CD44;nc|ENSG00000026508|P16070-3|CD44;nc|ENSG00000026508|P16070-4|CD44;nc|ENSG00000026508|P16070-6|CD44;nc|ENSG00000026508|P16070-17|CD44;nc|ENSG00000026508|P16070-16|CD44;nc|ENSG00000026508|P16070-9|CD44;nc|ENSG00000026508|P16070-8|CD44;ENST00000534296.5_1_11:35211476-35226207:+|nuORF;ENST00000534082.1_1_11:35222711-35227384:+|nuORF	ENSG00000026508|ENST00000428726|CD44	ENSG00000026508|ENST00000428726|CD44	MULTI-MSMS	HCT116MG_D190212_S2	2	498.74090576171875	2	498.740888	995.467223	0.33437	0.00016676	-0.2298	-0.00011461	0.10457	5.2151E-05	498.7407277206792	19.959	0.25849	19.584	19.455	19.713	-0.37503					7	4	2	0	0	0	0.16285	1	6977	6977		45.74	15.515	1	21565000			35293	957	22459	22580	33979	33979					-0.030691814929582506
VDRSRMAPKTP	11	Unmodified	_VDRSRMAPKTP_					0	0	0		nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7;nc|ENSG00000165891|Q96AV8-2|E2F7;E2F7|p.P729Lfs*53|1|0.24|ENSG00000165891|chr12:77025937-77025937|G/-|frameshift_variant;ENST00000551558.1_1_12:77439797-77459307:-|nuORF;E2F7|p.N49Mfs*39|1|0.23|ENSG00000165891|chr12:77056078-77056078|T/-|frameshift_variant;E2F7|p.P110Sfs*3|1|0.06|ENSG00000165891|chr12:77055896-77055897|-/A|frameshift_variant;E2F7|p.K105Rfs*43|1|0.41|ENSG00000165891|chr12:77055910-77055910|T/-|frameshift_variant	nc|ENSG00000165891|Q96AV8-3|E2F7	nc|ENSG00000165891|Q96AV8-3|E2F7	MSMS	HCT116MG_D190212_S2	2	419.8958435058594	3	419.895923	1256.66594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.384	1	29.083	28.583	29.583	-0.30095								0	0	0	0.95113	1	10761	10761		2.6312	0	1				35294	4805	22460	22581	33980	33980					0.04787335814239668
VDRWSGSIEAG	11	Unmodified	_VDRWSGSIEAG_					0	0	0		NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant;nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant	NEURL4|p.L1256Cfs*12|2|0.27|ENSG00000215041|chr17:7318594-7318594|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	588.7865600585938	2	588.785827	1175.5571	0.54803	0.00032267	0.32295	0.00019015	0.87098	0.00051282	588.7862801028814	30.733	0.4005	30.368	30.268	30.668	-0.36416					16	9	2	0	0	0	0.73535	1	11156	11156		10.8	10.8	1	3358800			35295	6445	22461	22582	33981	33981					-0.023655518843725076
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S1	1	476.1988525390625	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.815	1	4.815	4.315	5.315	0								0	0	0	0.97116	1	1450	1450		0	0	1				35296	4215	22462	22583	33982	33982					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S1	1	476.1986389160156	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8365	1	5.8365	5.3365	6.3365	0								0	0	0	0.97116	1	1758	1758		0	0	1				35297	4215	22462	22583	33983	33983					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S1	1	476.1990966796875	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3462	1	6.3462	5.8462	6.8462	0								0	0	0	0.97116	1	1914	1914		0	0	1				35298	4215	22462	22583	33984	33984					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S1	1	476.198974609375	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9111	1	8.9111	8.4111	9.4111	0								0	0	0	0.97116	1	2695	2695		0	0	1				35299	4215	22462	22583	33985	33985					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S1	1	476.19842529296875	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9439	1	9.9439	9.4439	10.444	0								0	0	0	0.97116	1	3031	3031		0	0	1				35300	4215	22462	22583	33986	33986					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S1	1	476.1985778808594	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.805	1	11.805	11.305	12.305	0								0	0	0	0.97116	1	3748	3748		0	0	1				35301	4215	22462	22583	33987	33987					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S2	2	476.19842529296875	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3052	1	5.1571	4.6571	5.6571	-0.14816								0	0	0	0.97116	1	1677	1677		0	0	1				35302	4215	22462	22583	33988	33988					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S2	2	476.19866943359375	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3363	1	6.1617	5.6617	6.6617	-0.17458								0	0	0	0.97116	1	1998	1998		0	0	1				35303	4215	22462	22583	33989	33989					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S2	2	476.19854736328125	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.2	1	64.084	63.584	64.584	-0.11585								0	0	0	0.97116	1	24858	24858		0	0	1				35304	4215	22462	22583	33990	33990					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S3	3	476.1985168457031	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2119	1	5.2293	4.7293	5.7293	0.017489								0	0	0	0.97116	1	1572	1572		0	0	1				35305	4215	22462	22583	33991	33991					-0.09429177100389552
VDSDAADTAS	10	Unmodified	_VDSDAADTAS_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.G1702Vfs*37|2|0.36|ENSG00000154358|chr1:228268769-228268769|G/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V3709Sfs*15|1|0.03|ENSG00000154358|chr1:228293609-228293610|-/A|frameshift_variant;OBSCN|p.E4688Dfs*35|1|0.03|ENSG00000154358|chr1:228318105-228318106|-/CATCTTC|frameshift_variant;OBSCN|p.E4729Rfs*7|1|0.37|ENSG00000154358|chr1:228318930-228318931|-/C|frameshift_variant;OBSCN|p.S5232Ffs*24|1|0.21|ENSG00000154358|chr1:228332900-228332901|-/T|frameshift_variant;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.P6994Lfs*78|1|0.15|ENSG00000154358|chr1:228371756-228371756|C/-|frameshift_variant;OBSCN|p.H7050Tfs*22|1|0.11|ENSG00000154358|chr1:228371922-228371922|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MSMS	HCT116MG_D190212_S3	3	476.1986389160156	2	476.198719	950.382884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7842	1	9.8168	9.3168	10.317	0.032559								0	0	0	0.97116	1	2957	2957		0	0	1				35306	4215	22462	22583	33992	33992					-0.09429177100389552
VDSLKVFK	8	Unmodified	_VDSLKVFK_					0	0	0			REV__tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	REV__tr|U7SPX4|U7SPX4_FUSNUHAE1familyhydrophobic/amphiphilicexporter-1(MainlyG-bacteria)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01680PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	468.2802734375	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.457	1	57.457	56.957	57.957	0								0	0	0	0.8837	1	22110	22110		2.5775	0	1		+		35307	17752	22463	22584	33993	33993					0.07887545936944207
VDSQILYY	8	Unmodified	_VDSQILYY_					0	0	0		ENST00000484580.6_1_17:26883511-26887327:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS	ENST00000484580.6_1_17:26883511-26887327:-|nuORF	ENST00000484580.6_1_17:26883511-26887327:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	501.2915954589844	2	500.752933	999.491313	0.57426	0.00028756	0.78192	0.00039155	1.3562	0.00067911	500.75316825523885	47.226	0.25924	47.104	46.922	47.182	-0.12175					6	4	2	0	0	0	0.26426	1	18008	18008		26.884	0	1	7876800			35308	1479	22464	22585	33994	33994					-0.00845341059277871
VDSSPRAAKP	10	Unmodified	_VDSSPRAAKP_					0	0	0		CA9|p.E402K|1|0.13|ENSG00000107159|chr9:35679992-35679992|G/A|missense_variant	CA9|p.E402K|1|0.13|ENSG00000107159|chr9:35679992-35679992|G/A|missense_variant	CA9|p.E402K|1|0.13|ENSG00000107159|chr9:35679992-35679992|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	514.27978515625	2	514.28018	1026.54581	0.14977	7.7022E-05	0.12112	6.2288E-05	0.27088	0.00013931	514.2803018277702	19.977	0.62429	19.602	19.403	20.027	-0.37503					16	11	2	0	0	0	0.51145	1	6969	6969		34.402	3.1334	1	5129600			35309	299	22465	22586	33995	33995					0.033596708121422125
VDSWSVVSA	9	Unmodified	_VDSWSVVSA_					0	0	0			REV__nc|ENSG00000005961|P08514-2|ITGA2B	REV__nc|ENSG00000005961|P08514-2|ITGA2B	MSMS	HCT116MG_D190212_S3	3	475.2332458496094	2	475.234907	948.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.074	1	17.159	16.659	17.659	0.084467								0	0	0	0.3563	1	5711	5711		36.044	7.5574	1		+		35310	10482	22466	22587	33996	33996					-0.021027982361374598
VDSWVKFAKK	10	Unmodified	_VDSWVKFAKK_					0	0	0			REV__MMP13|p.I370Nfs*3|1|0.33|ENSG00000137745|chr11:102947993-102947994|-/T|frameshift_variant	REV__MMP13|p.I370Nfs*3|1|0.33|ENSG00000137745|chr11:102947993-102947994|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	403.2324523925781	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.154	1	61.923	61.423	62.423	-0.23129								0	0	0	0.97045	1	23738	23738		0.15932	0	1		+		35311	12186	22467	22588	33997	33997					0.08102266811101799
VDTRAKVVL	9	Unmodified	_VDTRAKVVL_					0	0	0		KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant	KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant	KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	500.8115539550781	2	500.811116	999.60768	0.45156	0.00022615	-0.0095612	-4.7884E-06	0.442	0.00022136	500.81121853878653	31.622	0.20839	31.622	31.492	31.7	0					5	3	2	0	0	0	0.21251	1	11672	11672		39.957	0.0076237	1	5285700			35312	9259	22468	22589	33998	33998					0.10786022231286552
VDTRAKVVL	9	Unmodified	_VDTRAKVVL_					0	0	0		KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant	KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant	KIAA1522|p.P512Hfs*81|1|0.38|ENSG00000162522|chr1:32770886-32770886|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	500.811116	999.60768	0.45156	0.00022615	-0.0095612	-4.7884E-06	0.442	0.00022136	500.81121853878653	31.622	0.20839	31.622	31.492	31.7	0	-0.043513	0.00011355	NaN	39.957	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5285700			35313	9259	22468	22589							0.10786022231286552
VDVLTQWH	8	Unmodified	_VDVLTQWH_					0	0	0			REV__sp|P16783|TRX1_HCMVATriplexcapsidprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX1PE=1SV=1	REV__sp|P16783|TRX1_HCMVATriplexcapsidprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX1PE=1SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	499.2584228515625	2	499.258717	996.50288	0.37786	0.00018865	-0.17746	-8.8597E-05	0.2004	0.00010005	499.25857034117604	30.731	0.98841	30.367	30.249	31.238	-0.36416					31	21	2	0	0	0	0.28659	1	11103	11103		60.39	15.983	1	5485800	+		35314	17550	22469	22590	33999	33999					0.0044890075471357704
VDVPGNASKEA	11	Unmodified	_VDVPGNASKEA_					0	0	0		DEPDC1|p.S433A|1|0.06|ENSG00000024526|chr1:68482511-68482511|A/C|missense_variant	DEPDC1|p.S433A|1|0.06|ENSG00000024526|chr1:68482511-68482511|A/C|missense_variant	DEPDC1|p.S433A|1|0.06|ENSG00000024526|chr1:68482511-68482511|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	543.7755737304688	2	543.774928	1085.5353	0.38751	0.00021072	0.099525	5.4119E-05	0.48703	0.00026484	543.774882930669	16.074	0.25995	16.159	16.029	16.289	0.085424					9	4	3	0	0	0	0.41825	1	5317	5317		53.404	3.8497	1	5510700			35315	664	22470	22591	34000	34000					-0.004043566329301029
VEAHFKHKP	9	Unmodified	_VEAHFKHKP_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;chr7:900613-904126|469|13.6|0.0|20.38|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	546.80126953125	2	546.801083	1091.58761	0.38909	0.00021275	-0.025522	-1.3956E-05	0.36357	0.0001988	546.801110960366	16.207	0.15684	15.872	15.794	15.951	-0.33451					4	2	2	0	0	0	0.17622	1	5461	5461		43.772	27.925	1	6027500			35316	458	22471	22592	34001	34001					0.04548271291309902
VEAIFSKY	8	Unmodified	_VEAIFSKY_					0	0	0		HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;ENST00000528764.1_1_11:86735664-86735814:+|nuORF	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	478.75823974609375	2	478.758018	955.501483	0.16845	8.0648E-05	0.17713	8.4804E-05	0.34559	0.00016545	478.7580005173114	42.215	0.30997	42.146	41.964	42.274	-0.068199					12	5	3	0	0	0	0.15825	1	15976	15976		81.89	17.654	1	83118000			35317	1576	22472	22593	34002	34002					0.02195266665944473
VEAIFSKY	8	Unmodified	_VEAIFSKY_					0	0	0		HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;ENST00000528764.1_1_11:86735664-86735814:+|nuORF	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	956.0276489257812	1	956.50876	955.501483	0.57398	0.00054901	-0.28154	-0.00026929	0.29244	0.00027972	956.5080691785274	42.215	0.20693	42.146	42.016	42.223	-0.068199					5	3	2	0	0	0	0.054833	2	15984	15984;15998		118.07	43.646	1	21554000			35318	1576	22472	22593	34003;34004	34003					0.02195266665944473
VEAIFSKY	8	Unmodified	_VEAIFSKY_					0	0	0		HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;ENST00000528764.1_1_11:86735664-86735814:+|nuORF	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	478.7579650878906	2	478.758018	955.501483	0.28837	0.00013806	-0.038326	-1.8349E-05	0.25004	0.00011971	478.7578908728072	42.526	0.31342	42.222	42.04	42.353	-0.30352					11	5	3	0	0	0	0.20876	2	15847	15847;15876		71.922	17.149	1	15500000			35319	1576	22472	22593	34005;34006	34005					0.02195266665944473
VEAIFSKY	8	Unmodified	_VEAIFSKY_					0	0	0		HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;ENST00000528764.1_1_11:86735664-86735814:+|nuORF	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	478.7581787109375	2	478.758018	955.501483	0.39361	0.00018844	-0.1386	-6.6355E-05	0.25501	0.00012209	478.757914140231	42.603	0.2591	42.228	42.046	42.305	-0.37565					8	4	3	0	0	0	0.3588	1	15690	15690		53.833	17.789	1	5404400			35320	1576	22472	22593	34007	34007					0.02195266665944473
VEAIFSKY	8	Unmodified	_VEAIFSKY_					0	0	0		HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;HNRNPC|p.D277Mfs*6|1|0.38|ENSG00000092199|chr14:21211414-21211414|C/-|frameshift_variant;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;HNRNPC|p.P148Sfs*29|1|0.28|ENSG00000092199|chr14:21213081-21213082|-/G|frameshift_variant;ENST00000528764.1_1_11:86735664-86735814:+|nuORF	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	HNRNPCL2|p.I204Lfs*10|1|0.45|ENSG00000275774|chr1:13115791-13115791|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	478.758018	955.501483	-0.048207	-2.3079E-05	0.54129	0.00025915	0.49309	0.00023607	478.75816594454375	42.304	0.25975	42.304	42.123	42.383	0	0.078957	0.00042054	NaN	81.89	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8627100			35321	1576	22472	22593							0.02195266665944473
VEALTFPP	8	Unmodified	_VEALTFPP_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MSMS	HCT116MG_D190212_S4	4	437.2384948730469	2	437.239461	872.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.187	1	40.81	40.31	41.31	-0.37732								0	0	0	0.8837	1	15138	15138		10.183	0.83596	1				35322	2488	22473	22594	34008	34008					0.023035951201904936
VEAPAPLP	8	Unmodified	_VEAPAPLP_					0	0	0			REV__ENST00000565302.5_1_16:733531-734319:-|nuORF	REV__ENST00000565302.5_1_16:733531-734319:-|nuORF	MSMS	HCT116MG_D190212_S1	1	397.22509765625	2	397.226354	792.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.307	1	43.307	42.807	43.807	0								0	0	0	0.8837	1	16357	16357		2.5775	0	1		+		35323	16533	22474	22595	34009	34009					0.03363325948691909
VEAPLQIKKT	10	Unmodified	_VEAPLQIKKT_					0	0	0			REV__ENSG00000152137|ENST00000281938|HSPB8	REV__ENSG00000152137|ENST00000281938|HSPB8	MSMS	HCT116MG_D190212_S4	4	376.2326965332031	3	376.23253	1125.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.933	1	56.633	56.133	57.133	-0.3004								0	0	0	0.96453	1	21356	21356		1.7423	0	1		+		35324	12623	22475	22596	34010	34010					0.11794847091277916
VEASSGFG	8	Unmodified	_VEASSGFG_					0	0	0			REV__ENST00000263856.8_1_2:86732371-86732512:-|nuORF	REV__ENST00000263856.8_1_2:86732371-86732512:-|nuORF	MSMS	HCT116MG_D190212_S2	2	377.17462158203125	2	377.174318	752.334084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.627	1	62.498	61.998	62.998	-0.12924								0	0	0	0.8837	1	24277	24277		2.5775	0	1		+		35325	14657	22476	22597	34011	34011					-0.051990008787925035
VEAVAHIL	8	Unmodified	_VEAVAHIL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	HCT116MG_D190212_S2	2	426.25286865234375	2	426.252903	850.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.291	1	42.223	41.723	42.723	-0.068199								0	0	0	0.26045	1	16004	16004		59.795	19.347	1				35326	5087	22477	22598	34012	34012					0.06002703731383008
VEAVKNYNNP	10	Unmodified	_VEAVKNYNNP_					0	0	0		tr|U7SUB1|U7SUB1_FUSNUPyridoxal5'-phosphatesynthasesubunitPdxSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pdxSPE=3SV=1	tr|U7SUB1|U7SUB1_FUSNUPyridoxal5'-phosphatesynthasesubunitPdxSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pdxSPE=3SV=1	tr|U7SUB1|U7SUB1_FUSNUPyridoxal5'-phosphatesynthasesubunitPdxSOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pdxSPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	574.2911376953125	2	574.290745	1146.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.51	1	34.51	34.01	35.01	0								0	0	0	0.91638	1	12807	12807		12.241	1.4167	1				35327	18471	22478	22599	34013	34013					-0.00048363879000135057
VEAVRFLKEEP	11	Unmodified	_VEAVRFLKEEP_					0	0	0		nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.R976Kfs*8|1|0.4|ENSG00000120549|chr10:24527957-24527958|-/A|frameshift_variant;KIAA1217|p.R976Gfs*16|1|0.31|ENSG00000120549|chr10:24527958-24527958|A/-|frameshift_variant;KIAA1217|p.G1042Efs*92|1|0.09|ENSG00000120549|chr10:24531867-24531867|G/-|frameshift_variant;KIAA1217|p.Q1199Kfs*12|1|0.25|ENSG00000120549|chr10:24542749-24542749|C/-|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;KIAA1217|p.N1661Tfs*23|1|0.07|ENSG00000120549|chr10:24544247-24544247|A/-|frameshift_variant;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-4|KIAA1217	nc|ENSG00000120549|Q5T5P2-4|KIAA1217	MSMS	HCT116MG_D190212_S3	3	658.8667602539062	2	658.864077	1315.7136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.146	1	42.841	42.341	43.341	-0.30472								0	0	0	0.95113	1	16093	16093		5.7319	0	1				35328	2702	22479	22600	34014	34014					0.06837313286064273
VECLVQPCLT	10	Unmodified	_VECLVQPCLT_					0	0	0		RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN	RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant	RTTN|p.Y1487Mfs*4|1|0.38|ENSG00000176225|chr18:70075457-70075457|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	368.8524169921875	3	368.852444	1103.5355	0.03258	1.2017E-05	0.31797	0.00011729	0.35055	0.0001293	368.85244793407145	17.854	0.20853	17.854	17.724	17.933	0					5	3	2	0	0	0	0.71349	1	6133	6133		12.175	0	1	4926200			35329	5413	22480	22601	34015	34015					-0.01212396228970647
VEDEGLRVF	9	Unmodified	_VEDEGLRVF_					0	0	0		ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	ENSG00000185989|ENST00000334062|RASA3	MULTI-SECPEP	HCT116MG_D190212_S2	2	531.8162841796875	2	532.274564	1062.53457	0.45958	0.00024462	-0.73984	-0.0003938	-0.28026	-0.00014918	532.2740836938074	45.939	0.20505	45.837	45.71	45.915	-0.1014					6	3	2	0	0	0	0.11907	1	17473	17473		45.74	14.472	1	17375000			35330	5862	22481	22602	34016	34016					0.0058084871798200766
VEDPVTVEY	9	Unmodified	_VEDPVTVEY_					0	0	0		nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;PSMA8|p.N213Kfs*3|1|0.21|ENSG00000154611|chr18:26179084-26179085|-/A|frameshift_variant;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000101182|ENST00000370873|PSMA7;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8;nc|ENSG00000101182|O14818-2|PSMA7	nc|ENSG00000101182|O14818-4|PSMA7	nc|ENSG00000101182|O14818-4|PSMA7	MSMS	HCT116MG_D190212_S3	3	525.7518310546875	2	525.75313	1049.49171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.512	1	41.21	40.71	41.71	-0.30257								0	0	0	0.030973	1	15443	15443		81.613	30.758	1				35331	1758	22482	22603	34017	34017					-0.03105966130078741
VEDRGTVVA	9	Unmodified	_VEDRGTVVA_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91492584-91493004:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S1	1	473.2533264160156	2	473.253631	944.49271	0.22682	0.00010734	0.064097	3.0334E-05	0.29092	0.00013768	473.2535981902165	22.089	0.3133	22.089	21.906	22.22	0					9	5	2	0	0	0	0.051033	1	7797	7797		74.2	24.267	1	50554000			35332	3675	22483	22604	34018	34018					0.01824293029483215
VEDRGTVVA	9	Unmodified	_VEDRGTVVA_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91492584-91493004:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S1	1	945.5005493164062	1	945.499986	944.49271	0.86855	0.00082122	0.39048	0.0003692	1.259	0.0011904	945.5000892411884	22.089	0.20894	22.089	21.959	22.167	0					6	3	2	0	0	0	0.011132	1	7816	7816		110.55	41.448	1	6615300			35333	3675	22483	22604	34019	34019					0.01824293029483215
VEDRGTVVA	9	Unmodified	_VEDRGTVVA_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91492584-91493004:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S2	2	473.2539367675781	2	473.253631	944.49271	0.35418	0.00016762	-0.11561	-5.4711E-05	0.23857	0.00011291	473.2535219811826	22.514	0.62291	22.128	21.947	22.57	-0.3852					28	11	4	0	0	0	0.037825	1	7980	7980		80.676	36.818	1	209400000			35334	3675	22483	22604	34020	34020					0.01824293029483215
VEDRGTVVA	9	Unmodified	_VEDRGTVVA_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91492584-91493004:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S2	2	945.5011596679688	1	945.499986	944.49271	0.78108	0.00073851	0.01169	1.1053E-05	0.79277	0.00074956	945.4998963385835	22.514	0.36344	22.128	21.999	22.362	-0.3852					13	6	3	0	0	0	0.011132	1	7982	7982		110.55	31.825	1	69523000			35335	3675	22483	22604	34021	34021					0.01824293029483215
VEDRGTVVA	9	Unmodified	_VEDRGTVVA_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91492584-91493004:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S3	3	473.2531433105469	2	473.253631	944.49271	0.20425	9.666E-05	-0.04817	-2.2796E-05	0.15608	7.3863E-05	473.25357645840666	21.911	0.62561	21.912	21.677	22.302	0.00074577					29	11	4	0	0	0	0.056114	1	7647	7647		71.708	27.936	1	96936000			35336	3675	22483	22604	34022	34022					0.01824293029483215
VEDRGTVVA	9	Unmodified	_VEDRGTVVA_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91492584-91493004:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S3	3	945.4998168945312	1	945.499986	944.49271	0.67881	0.00064182	-0.29532	-0.00027922	0.38349	0.00036259	945.4996624372244	21.911	0.31236	21.912	21.781	22.094	0.00074577					10	5	3	0	0	0	0.016412	1	7669	7669		100.09	30.986	1	10514000			35337	3675	22483	22604	34023	34023					0.01824293029483215
VEDRGTVVA	9	Unmodified	_VEDRGTVVA_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91492584-91493004:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2543640136719	2	473.253631	944.49271	0.32983	0.00015609	-0.1146	-5.4235E-05	0.21523	0.00010186	473.2535134234732	22.204	0.46732	21.976	21.78	22.247	-0.22777					18	8	3	0	0	0	0.07468	1	7708	7708		63.227	26.721	1	17521000			35338	3675	22483	22604	34024	34024					0.01824293029483215
VEDRGTVVA	9	Unmodified	_VEDRGTVVA_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91492584-91493004:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	HCT116MG_D190212_S4	4	945.4991455078125	1	945.499986	944.49271	0.58258	0.00055083	-0.25476	-0.00024087	0.32782	0.00030996	945.4994533356867	22.206	0.25964	21.979	21.832	22.091	-0.22777					7	4	2	0	0	0	0.026272	1	7729	7729		90.135	21.03	1	2333800			35339	3675	22483	22604	34025	34025					0.01824293029483215
VEEEPRPAA	9	Unmodified	_VEEEPRPAA_					0	0	0		nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2	nc|ENSG00000079819|O43491-4|EPB41L2	nc|ENSG00000079819|O43491-4|EPB41L2	MULTI-MSMS	HCT116MG_D190212_S3	3	499.2516784667969	2	499.251089	996.487624	0.40046	0.00019993	0.077147	3.8516E-05	0.47761	0.00023845	499.2511233648059	19.553	0.3126	19.612	19.386	19.698	0.059828					11	5	3	0	0	0	0.21258	1	6720	6720		39.95	1.7741	1	3724000			35340	1387	22484	22605	34026	34026					-0.01076010833151031
VEEFHVAV	8	Unmodified	_VEEFHVAV_					0	0	0			REV__AFM|p.T180I|1|0.37|ENSG00000079557|chr4:73487023-73487023|C/T|missense_variant	REV__AFM|p.T180I|1|0.37|ENSG00000079557|chr4:73487023-73487023|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	465.7658996582031	2	465.239993	928.465432	0.5273	0.00024532	3.251	0.0015125	3.7783	0.0017578	465.2416936364339	35.258	0.15611	34.959	34.853	35.009	-0.29922					4	2	2	0	0	0	0.60268	1	12991	12991		32.117	1.8922	1	2379300	+		35341	9880	22485	22606	34027	34027					-0.0016619051090174253
VEELKPTPE	9	Unmodified	_VEELKPTPE_					0	0	0		CON__P02754	CON__P02754	CON__P02754	MSMS	HCT116MG_D190212_S1	1	521.276611328125	2	521.276772	1040.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.526	1	25.526	25.026	26.026	0								0	0	0	0.080552	1	9186	9186		61.602	21.652	1			+	35342	553	22486	22607	34028	34028					0.020343131408935733
VEELKPTPE	9	Unmodified	_VEELKPTPE_					0	0	0		CON__P02754	CON__P02754	CON__P02754	MULTI-MSMS	HCT116MG_D190212_S3	3	521.276611328125	2	521.276772	1040.53899	0.41141	0.00021446	-0.24235	-0.00012633	0.16907	8.8131E-05	521.2766130429972	25.648	0.26023	25.52	25.39	25.65	-0.12795					8	4	3	0	0	0	0.064006	1	9172	9172		67.838	9.1593	1	7363900		+	35343	553	22486	22607	34029	34029					0.020343131408935733
VEELKPTPE	9	Unmodified	_VEELKPTPE_					0	0	0		CON__P02754	CON__P02754	CON__P02754	MULTI-MSMS	HCT116MG_D190212_S4	4	521.27685546875	2	521.276772	1040.53899	0.37912	0.00019763	-0.032713	-1.7053E-05	0.34641	0.00018057	521.2766825722839	25.816	0.26022	25.526	25.36	25.62	-0.29023					8	4	2	0	0	0	0.026272	1	9175	9175		90.135	31.456	1	5965900		+	35344	553	22486	22607	34030	34030					0.020343131408935733
VEELNTSNTNI	11	Unmodified	_VEELNTSNTNI_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MSMS	HCT116MG_D190212_S1	1	617.3027954101562	2	617.301507	1232.58846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.564	1	59.564	59.064	60.064	0								0	0	0	0.96208	1	22955	22955		0	0	1		+		35345	11135	22487	22608	34031	34031					-0.018530236409105783
VEELVGDVAK	10	Unmodified	_VEELVGDVAK_					0	0	0		tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	tr|U7SJJ8|U7SJJ8_FUSNUDNA3'-5'helicaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02077PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	529.7901000976562	2	529.790047	1057.56554	0.38842	0.00020578	0.59157	0.00031341	0.97999	0.00051919	529.7905004307935	27.917	0.26037	27.917	27.748	28.008	0					6	4	2	0	0	0	0.45124	1	10179	10179		38.615	0	1	9507100			35346	18318	22488	22609	34032	34032					0.03906002032226752
VEENVWIQL	9	Unmodified	_VEENVWIQL_					0	0	0		ENST00000512711.1_1_4:157757122-157795072:-|nuORF;nc|ENSG00000145431|Q9NRA1-3|PDGFC;PDGFC|p.P178Lfs*13|1|0.18|ENSG00000145431|chr4:156772856-156772856|G/-|frameshift_variant;nc|ENSG00000145431|Q9NRA1-2|PDGFC;ENSG00000145431|ENST00000502773|PDGFC	ENST00000512711.1_1_4:157757122-157795072:-|nuORF	ENST00000512711.1_1_4:157757122-157795072:-|nuORF	MSMS	HCT116MG_D190212_S2	2	377.2012634277344	3	377.201118	1128.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.862	1	58.697	58.197	59.197	-0.1653								0	0	0	0.7696	1	22758	22758		1.1933	0	1				35347	3911	22489	22610	34033	34033					0.022377082691491523
VEEPSRPSA	9	Unmodified	_VEEPSRPSA_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	486.2435302734375	2	486.243264	970.471974	0.13406	6.5185E-05	-0.26759	-0.00013012	-0.13354	-6.4931E-05	486.2428996721741	20.375	0.37043	19.995	19.813	20.183	-0.37949					10	6	2	0	0	0	0.056114	1	7123	7123		71.708	17.875	1	17024000			35348	2277	22490	22611	34034	34034					-0.01444297350190027
VEEPSRPSA	9	Unmodified	_VEEPSRPSA_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	486.2432556152344	2	486.243264	970.471974	-0.040742	-1.981E-05	0.50527	0.00024569	0.46453	0.00022588	486.2433246692899	20.094	0.31191	19.9	19.684	19.996	-0.19368					9	5	2	0	0	0	0.13424	1	6854	6854		51.415	7.5569	1	3361600			35349	2277	22490	22611	34035	34035					-0.01444297350190027
VEEPSRPSA	9	Unmodified	_VEEPSRPSA_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	486.243264	970.471974	0.22653	0.00011015	1.6454	0.00080007	1.8719	0.00091022	486.2433598993636	19.846	0.20921	19.846	19.756	19.966	0	-0.059582	0.0012659	NaN	71.708	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1433300			35350	2277	22490	22611							-0.01444297350190027
VEEPSRPSA	9	Unmodified	_VEEPSRPSA_					0	0	0		FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant;FOXM1|p.E671Nfs*12|3|0.38|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	FOXM1|p.P629Qfs*4|1|0.27|ENSG00000111206|chr12:2859044-2859044|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	486.243264	970.471974	0.12929	6.2864E-05	0.30583	0.00014871	0.43512	0.00021157	486.24325467805045	19.821	0.41669	19.881	19.646	20.063	0.05983	-0.025088	-3.6808E-05	NaN	71.708	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10835000			35351	2277	22490	22611							-0.01444297350190027
VEEQTTQL	8	Unmodified	_VEEQTTQL_					0	0	0		nc|ENSG00000144535|Q8IYB7-3|DIS3L2	nc|ENSG00000144535|Q8IYB7-3|DIS3L2	nc|ENSG00000144535|Q8IYB7-3|DIS3L2	MULTI-SECPEP	HCT116MG_D190212_S2	2	474.74066162109375	2	474.237647	946.460741	0.24026	0.00011394	-0.089265	-4.2333E-05	0.151	7.1609E-05	474.23749316809284	19.335	0.41704	18.966	18.627	19.044	-0.3695					13	7	3	0	0	0	0.29402	1	6602	6602		11.64	0.81637	1	8393100			35352	9487	22491	22612	34036	34036					-0.014631194443268214
VEEWLSEFKY	10	Unmodified	_VEEWLSEFKY_					0	0	0		ENST00000465661.1_1_7:23025348-23030730:-|nuORF	ENST00000465661.1_1_7:23025348-23030730:-|nuORF	ENST00000465661.1_1_7:23025348-23030730:-|nuORF	MSMS	HCT116MG_D190212_S2	2	665.6791381835938	2	665.321711	1328.62887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.674	1	39.596	39.096	40.096	-0.077835								0	0	0	0.92607	1	14940	14940		10.074	0.6908	1				35353	8094	22492	22613	34037	34037					-0.022300572505173477
VEFEMRPP	8	Unmodified	_VEFEMRPP_					0	0	0		nc|ENSG00000161681|Q9Y566-2|SHANK1;SHANK1|p.L2065Sfs*68|1|0.18|ENSG00000161681|chr19:50662259-50662259|C/-|frameshift_variant;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1	nc|ENSG00000161681|Q9Y566-2|SHANK1	nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-SECPEP	HCT116MG_D190212_S3	3	502.24591064453125	2	502.747127	1003.4797	0.26301	0.00013223	-0.62032	-0.00031187	-0.35731	-0.00017964	502.7475876675954	20.67	0.31234	20.705	20.506	20.818	0.034473					8	5	2	0	0	0	0.26661	1	7198	7198		18.135	0	1	5962800			35354	4492	22493	22614	34038	34038					-0.021898613542589374
VEFLTEPEFSY	11	Unmodified	_VEFLTEPEFSY_					0	0	0			REV__ENST00000487874.1_1_1:35496244-35497272:-|nuORF	REV__ENST00000487874.1_1_1:35496244-35497272:-|nuORF	MSMS	HCT116MG_D190212_S3	3	680.5969848632812	2	680.819001	1359.62345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.299	1	54.003	53.503	54.503	-0.29587								0	0	0	0.93717	1	20572	20572		13.042	2.2185	1		+		35355	16009	22494	22615	34039	34039					-0.04197780832987519
VEFMEKRIKKL	11	Unmodified	_VEFMEKRIKKL_					0	0	0		CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant;CEP162|p.R1099Efs*46|2|0.27|ENSG00000135315|chr6:84152880-84152881|-/T|frameshift_variant;CEP162|p.N1181Mfs*3|2|0.21|ENSG00000135315|chr6:84152632-84152632|T/-|frameshift_variant;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant	CEP162|p.K1098Rfs*20|1|0.46|ENSG00000135315|chr6:84152881-84152881|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	710.91943359375	2	710.920872	1419.82719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43	1	42.93	42.43	43.43	-0.070637								0	0	0	0.95686	1	16291	16291		2.7352	0.23671	1				35356	403	22495	22616	34040	34040					0.13407085127482787
VEFNKLTKRWL	11	Unmodified	_VEFNKLTKRWL_					0	0	0			REV__ENSG00000095015|ENST00000399503|MAP3K1	REV__ENSG00000095015|ENST00000399503|MAP3K1	MSMS	HCT116MG_D190212_S1	1	717.4197387695312	2	717.416811	1432.81907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.355	1	33.355	32.855	33.855	0								0	0	0	0.95196	1	12341	12341		5.2969	0.39987	1		+		35357	11022	22496	22617	34041	34041					0.11997274202371955
VEFQIMDP	8	Unmodified	_VEFQIMDP_					0	0	0		ENSG00000164946|ENST00000380880|FREM1;ENST00000486223.1_1_9:14751839-14775864:-|nuORF;nc|ENSG00000164946|Q5H8C1-4|FREM1;nc|ENSG00000164946|Q5H8C1-2|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MSMS	HCT116MG_D190212_S2	2	489.7354736328125	2	489.733686	977.452819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.119	1	22.734	22.234	23.234	-0.3852								0	0	0	0.8837	1	8224	8224		14.582	0	1				35358	4736	22497	22618	34042	34042					-0.03680969965444092
VEFVKFYKRKR	11	Unmodified	_VEFVKFYKRKR_					0	0	0			REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	MSMS	HCT116MG_D190212_S1	1	750.4471435546875	2	750.445903	1498.87725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.563	1	43.563	43.063	44.063	0								0	0	0	0.9598	1	16461	16461		1.1933	0.79263	1		+		35359	13141	22498	22619	34043	34043					0.14776955847605677
VEFVKFYKRKR	11	Unmodified	_VEFVKFYKRKR_					0	0	0			REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	MSMS	HCT116MG_D190212_S1	1	750.4481811523438	2	750.445903	1498.87725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.817	1	57.817	57.317	58.317	0								0	0	0	0.95686	1	22256	22256		2.7352	1.2533	1		+		35360	13141	22498	22619	34044	34044					0.14776955847605677
VEFVKFYKRKR	11	Unmodified	_VEFVKFYKRKR_					0	0	0			REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	MSMS	HCT116MG_D190212_S2	2	750.4488525390625	2	750.445903	1498.87725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.011	1	57.838	57.338	58.338	-0.17256								0	0	0	0.95731	1	22409	22409		2.4985	1.0166	1		+		35361	13141	22498	22619	34045	34045					0.14776955847605677
VEGAEVRVS	9	Unmodified	_VEGAEVRVS_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1;CNTNAP1|p.G828Afs*57|1|0.19|ENSG00000108797|chr17:42691939-42691939|G/-|frameshift_variant	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-MSMS	HCT116MG_D190212_S4	4	474.2431640625	2	473.253631	944.49271	0.32983	0.00015609	-0.1146	-5.4235E-05	0.21523	0.00010186	473.2535134234732	22.204	0.46732	21.976	21.78	22.247	-0.22777					18	8	3	0	0	0	0.49616	1	7674	7674		17.113	0.96379	1	17521000			35362	2183	22499	22620	34046	34046					0.01824293029483215
VEGALREQP	9	Unmodified	_VEGALREQP_					0	0	0			REV__ENST00000483836.1_1_22:50500014-50511179:-|nuORF	REV__ENST00000483836.1_1_22:50500014-50511179:-|nuORF	MSMS	HCT116MG_D190212_S3	3	499.7670593261719	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.195	1	17.279	16.779	17.779	0.084467								0	0	0	0.61599	1	5760	5760		23.148	2.6948	1		+		35363	11087	22500	22621	34047	34047					0.020399819208023473
VEGDDEEQEFE	11	Unmodified	_VEGDDEEQEFE_					0	0	0			REV__ENST00000478032.1_1_1:114940272-114940509:-|nuORF	REV__ENST00000478032.1_1_1:114940272-114940509:-|nuORF	MSMS	HCT116MG_D190212_S2	2	663.2545166015625	2	663.254419	1324.49429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.93	1	45.828	45.328	46.328	-0.1014								0	0	0	0.95636	1	17481	17481		2.9952	0	1		+		35364	14066	22501	22622	34048	34048					-0.15498207253722285
VEGDEVFERK	10	Unmodified	_VEGDEVFERK_					0	0	0			REV__ENSG00000198042|ENST00000360128|MAK16	REV__ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	HCT116MG_D190212_S3	3	604.802978515625	2	604.30131	1206.58807	0.53078	0.00032075	-0.15588	-9.4199E-05	0.37489	0.00022655	604.3012678465743	19.432	0.93694	19.492	18.97	19.907	0.059828					26	17	2	0	0	0	0.75066	1	6647	6647		16.149	0	1	3515500	+		35365	14105	22502	22623	34049	34049					-0.006963985701531783
VEGDPIVAL	9	Unmodified	_VEGDPIVAL_					0	0	0		MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant;nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant	MED16|p.V318*|1|0.26|ENSG00000175221|chr19:884936-884936|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	912.5780639648438	1	912.503674	911.496398	0.8001	0.0007301	-0.30449	-0.00027784	0.49562	0.00045225	912.5038069240081	51.838	0.20523	51.655	51.527	51.732	-0.18369					5	3	2	0	0	0	0.071351	2	19894	19894;19919		64.236	13.381	1	10340000			35366	5367	22503	22624	34050;34051	34050					0.03710962803347684
VEGELEMGP	9	Unmodified	_VEGELEMGP_					0	0	0		nc|ENSG00000177354|Q711Q0-3|CEFIP;ENSG00000177354|ENST00000374144|C10orf71	nc|ENSG00000177354|Q711Q0-3|CEFIP	nc|ENSG00000177354|Q711Q0-3|CEFIP	MSMS	HCT116MG_D190212_S4	4	480.7229309082031	2	480.720775	959.426998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.808	1	18.627	18.127	19.127	-0.18052								0	0	0	0.50556	1	6338	6338		28.487	0.85804	1				35367	5453	22504	22625	34052	34052					-0.05433864207725492
VEGFKTDIKV	10	Unmodified	_VEGFKTDIKV_					0	0	0		CCDC77|p.L427F|1|0.5|ENSG00000120647|chr12:440955-440955|C/T|missense_variant;nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77	CCDC77|p.L427F|1|0.5|ENSG00000120647|chr12:440955-440955|C/T|missense_variant	CCDC77|p.L427F|1|0.5|ENSG00000120647|chr12:440955-440955|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	567.7749633789062	2	568.321514	1134.62847	0.47315	0.0002689	-3.2699	-0.0018584	-2.7968	-0.0015895	568.3194062876122	27.694	0.30929	27.352	27.191	27.5	-0.34201					6	5	2	0	0	0	0.27023	1	10009	10009		19.257	0	1	5193100			35368	355	22505	22626	34053	34053					0.06654567820260127
VEGFSGQGLR	10	Unmodified	_VEGFSGQGLR_					0	0	0			REV__sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1	REV__sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	525.2723999023438	2	525.272355	1048.53016	0.36235	0.00019033	-0.38725	-0.00020341	-0.024897	-1.3078E-05	525.2719741730455	19.394	0.62383	19.207	18.869	19.493	-0.18674					19	11	3	0	0	0	0.64492	1	6557	6557		24.991	0	1	3045700	+		35369	17577	22506	22627	34054	34054					0.00783384295095857
VEGGDKLQ	8	Unmodified	_VEGGDKLQ_					0	0	0		CADPS|p.E429D|1|0.18|ENSG00000163618|chr3:62645760-62645760|C/A|missense_variant	CADPS|p.E429D|1|0.18|ENSG00000163618|chr3:62645760-62645760|C/A|missense_variant	CADPS|p.E429D|1|0.18|ENSG00000163618|chr3:62645760-62645760|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	423.2237854003906	2	423.2218	844.429047	0.12047	5.0986E-05	-0.18818	-7.9642E-05	-0.067708	-2.8656E-05	423.22371466103243	34.814	1.0778	34.428	33.827	34.905	-0.38606					35	20	3	0	0	0	0.78216	1	12688	12688		13.508	0	1	4662600			35370	313	22507	22628	34055	34055					0.0006093259237331949
VEGGSAIKSLP	11	Unmodified	_VEGGSAIKSLP_					0	0	0			REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	REV__tr|U7T6X9|U7T6X9_FUSNUDNArepairproteinRecNOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00046PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.777099609375	2	529.298039	1056.58152	0.18541	9.8139E-05	-0.054002	-2.8583E-05	0.13141	6.9556E-05	529.2979246745168	30.44	1.3923	30.156	29.667	31.059	-0.28453					30	26	2	0	0	0	0.35198	1	11261	11261		18.373	18.373	1	21155000	+		35371	18005	22508	22629	34056	34056					0.0554970826913177
VEGGSEVGPPP	11	Unmodified	_VEGGSEVGPPP_					0	0	0		ENST00000527959.1_1_11:66290957-66294394:+|nuORF;nc|ENSG00000174483|Q8NFJ9-3|BBS1;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1	ENST00000527959.1_1_11:66290957-66294394:+|nuORF	ENST00000527959.1_1_11:66290957-66294394:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7513427734375	2	512.750921	1023.48729	0.23664	0.00012134	0.085566	4.3874E-05	0.3222	0.00016521	512.7508726817003	25.425	0.26115	25.056	24.926	25.187	-0.36914					6	4	2	0	0	0	0.55933	1	9186	9186		39.95	6.5048	1	7475600			35372	5333	22509	22630	34057	34057					-0.023514305529943158
VEGKKMTEKW	10	Unmodified	_VEGKKMTEKW_					0	0	0		ENST00000368324.4_1_1:155851335-155851446:+|nuORF	ENST00000368324.4_1_1:155851335-155851446:+|nuORF	ENST00000368324.4_1_1:155851335-155851446:+|nuORF	MSMS	HCT116MG_D190212_S1	1	618.27294921875	2	618.326273	1234.63799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.35	1	21.35	20.85	21.85	0								0	0	0	0.90892	1	7506	7506		13.906	3.1065	1				35373	7400	22510	22631	34058	34058					0.030060128341574455
VEGLPRAAGPP	11	Unmodified	_VEGLPRAAGPP_					0	0	0			REV__nc|ENSG00000179168|Q86UU5-2|GGN	REV__nc|ENSG00000179168|Q86UU5-2|GGN	MSMS	HCT116MG_D190212_S2	2	532.296630859375	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.006	1	26.653	26.153	27.153	-0.35254								0	0	0	0.90571	1	9792	9792		19.257	3.4098	1		+		35374	13632	22511	22632	34059	34059					0.053405477088290354
VEGLRRTL	8	Unmodified	_VEGLRRTL_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S3	3	472.2876892089844	2	472.287808	942.561064	0.19464	9.1925E-05	0.19208	9.0719E-05	0.38672	0.00018264	472.28784163487165	51.858	1.2272	51.548	51.122	52.349	-0.30927					48	23	3	0	0	0	0.8506	1	19760	19760		5.2307	0	1	37162000		+	35375	585	22512	22633	34060	34060					0.08748582400005489
VEGLRRTL	8	Unmodified	_VEGLRRTL_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-MSMS	HCT116MG_D190212_S4	4	472.28790283203125	2	472.287808	942.561064	0.26448	0.00012491	0.12166	5.7457E-05	0.38614	0.00018237	472.2877840122135	51.838	1.6613	51.493	50.999	52.66	-0.34538					82	31	4	0	0	0	0.8506	1	19431	19431		5.2307	0	1	143680000		+	35376	585	22512	22633	34061	34061					0.08748582400005489
VEGLWLRYQ	9	Unmodified	_VEGLWLRYQ_					0	0	0		SLC38A7|p.V357Cfs*38|1|0.24|ENSG00000103042|chr16:58671207-58671207|C/-|frameshift_variant;ENSG00000103042|ENST00000219320|SLC38A7	SLC38A7|p.V357Cfs*38|1|0.24|ENSG00000103042|chr16:58671207-58671207|C/-|frameshift_variant	SLC38A7|p.V357Cfs*38|1|0.24|ENSG00000103042|chr16:58671207-58671207|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	582.3128051757812	2	582.314023	1162.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.582	1	29.582	29.082	30.082	0								0	0	0	0.76575	1	10817	10817		15.847	1.0089	1				35377	18162	22513	22634	34062	34062					0.03869120742933774
VEGQPAASLHE	11	Unmodified	_VEGQPAASLHE_					0	0	0		ENST00000471478.1_1_20:25196340-25204798:+|nuORF	ENST00000471478.1_1_20:25196340-25204798:+|nuORF	ENST00000471478.1_1_20:25196340-25204798:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	568.819091796875	2	569.280377	1136.5462	0.45281	0.00025777	-0.28806	-0.00016398	0.16475	9.379E-05	569.2799769898879	18.379	0.41693	18.456	18.257	18.674	0.076334					13	7	3	0	0	0	0.36112	1	6169	6169		15.248	15.248	1	4757400			35378	8157	22514	22635	34063	34063					-0.01660954258682068
VEGQVFEEKKE	11	Unmodified	_VEGQVFEEKKE_					0	0	0			REV__ENSG00000091664|ENST00000263160|SLC17A6	REV__ENSG00000091664|ENST00000263160|SLC17A6	MULTI-MSMS	HCT116MG_D190212_S4	4	661.3348388671875	2	661.33535	1320.65615	0.44457	0.00029401	-1.8141	-0.0011997	-1.3695	-0.0009057	661.334370187548	23.127	0.26345	22.889	22.81	23.074	-0.23758					8	4	2	0	0	0	0.73696	1	8110	8110		8.1555	0.54658	1	2766600	+		35379	11004	22515	22636	34064	34064					0.008644262898314992
VEGQVFEEKKE	11	Unmodified	_VEGQVFEEKKE_					0	0	0			REV__ENSG00000091664|ENST00000263160|SLC17A6	REV__ENSG00000091664|ENST00000263160|SLC17A6	MULTI-MATCH	HCT116MG_D190212_S3	3		2	661.33535	1320.65615	0.65687	0.00043441	-2.5031	-0.0016554	-1.8462	-0.001221	661.3336393867253	23.012	0.31227	22.985	22.836	23.148	-0.02688	0.048179	-0.00039889	NaN	8.1555	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1892100	+		35380	11004	22515	22636							0.008644262898314992
VEGQVFEEKKE	11	Unmodified	_VEGQVFEEKKE_					0	0	0			REV__ENSG00000091664|ENST00000263160|SLC17A6	REV__ENSG00000091664|ENST00000263160|SLC17A6	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	661.33535	1320.65615	0.44457	0.00029401	-1.8141	-0.0011997	-1.3695	-0.0009057	661.334370187548	23.127	0.26345	22.889	22.81	23.074	-0.23758	-0.048179	0.00051243	NaN	8.1555	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2766600	+		35381	11004	22515	22636							0.008644262898314992
VEHDAFIF	8	Unmodified	_VEHDAFIF_					0	0	0		nc|ENSG00000030066|Q12769|NUP160;ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769-3|NUP160	nc|ENSG00000030066|Q12769|NUP160	nc|ENSG00000030066|Q12769|NUP160	MULTI-MSMS	HCT116MG_D190212_S2	2	489.24017333984375	2	489.239993	976.465432	0.1162	5.6849E-05	0.54757	0.00026789	0.66377	0.00032474	489.2401285479828	53.64	0.41304	53.451	53.274	53.687	-0.1894					14	7	3	0	0	0	0.3916	1	20637	20637		50.855	12.704	1	44452000			35382	965	22516	22637	34065	34065					-0.02374190510909102
VEHDAFIF	8	Unmodified	_VEHDAFIF_					0	0	0		nc|ENSG00000030066|Q12769|NUP160;ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769-3|NUP160	nc|ENSG00000030066|Q12769|NUP160	nc|ENSG00000030066|Q12769|NUP160	MULTI-MSMS	HCT116MG_D190212_S3	3	489.24005126953125	2	489.239993	976.465432	0.15354	7.5117E-05	0.12445	6.0884E-05	0.27798	0.000136	489.2399407133384	53.835	0.36435	53.535	53.352	53.716	-0.29946					12	6	3	0	0	0	0.36164	1	20390	20390		53.576	19.388	1	7270900			35383	965	22516	22637	34066	34066					-0.02374190510909102
VEHDAFIF	8	Unmodified	_VEHDAFIF_					0	0	0		nc|ENSG00000030066|Q12769|NUP160;ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769-3|NUP160	nc|ENSG00000030066|Q12769|NUP160	nc|ENSG00000030066|Q12769|NUP160	MULTI-MSMS	HCT116MG_D190212_S4	4	489.2402648925781	2	489.239993	976.465432	0.041618	2.0361E-05	-0.058232	-2.8489E-05	-0.016614	-8.128E-06	489.2400327676166	53.864	0.26008	53.535	53.405	53.665	-0.32923					6	4	2	0	0	0	0.62424	1	20161	20161		30.225	10.786	1	3036500			35384	965	22516	22637	34067	34067					-0.02374190510909102
VEHIIREDY	9	Unmodified	_VEHIIREDY_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MSMS	HCT116MG_D190212_S1	1	587.2994384765625	2	587.29857	1172.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.854	1	28.854	28.354	29.354	0								0	0	0	0.76793	1	10524	10524		8.1555	1.0538	1				35385	9571	22517	22638	34068	34068					0.003199226380502296
VEHIIREDY	9	Unmodified	_VEHIIREDY_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-SECPEP	HCT116MG_D190212_S1	1	391.52789306640625	3	391.868139	1172.58259	0.1594	6.2464E-05	0.21263	8.3324E-05	0.37203	0.00014579	392.2025596402789	28.744	0.15707	28.744	28.641	28.798	0					4	2	2	0	0	0	0.14204	1	10464	10464		49.742	22.654	1	5553500			35386	9571	22517	22638	34069	34069					0.003199226380502296
VEHIIREDY	9	Unmodified	_VEHIIREDY_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	HCT116MG_D190212_S2	2	391.86822509765625	3	391.868139	1172.58259	0.085452	3.3486E-05	-0.0093572	-3.6668E-06	0.076095	2.9819E-05	391.8681452374351	29.118	0.20428	28.802	28.709	28.914	-0.31613					5	3	2	0	0	0	0.35842	1	10676	10676		23.801	12.17	1	17961000			35387	9571	22517	22638	34070	34070					0.003199226380502296
VEHKVETF	8	Unmodified	_VEHKVETF_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	HCT116MG_D190212_S1	1	494.75872802734375	2	494.758549	987.502546	0.41189	0.00020379	0.088513	4.3793E-05	0.5004	0.00024758	494.7584987073779	24.751	0.26163	24.751	24.621	24.882	0					10	4	3	0	0	0	0.079387	1	8896	8896		99.755	41.076	1	22478000			35388	5218	22518	22639	34071	34071					0.008294810348502324
VEHKVETF	8	Unmodified	_VEHKVETF_					0	0	0		ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENSG00000171863|ENST00000645674|RPS7	ENSG00000171863|ENST00000645674|RPS7	MULTI-MSMS	HCT116MG_D190212_S3	3	494.75848388671875	2	494.758549	987.502546	0.30204	0.00014944	-0.18727	-9.2655E-05	0.11477	5.6783E-05	494.75834841736173	24.744	0.36421	24.66	24.497	24.861	-0.083693					8	6	2	0	0	0	0.061818	1	8813	8813		110.67	51.996	1	6584000			35389	5218	22518	22639	34072	34072					0.008294810348502324
VEHLLRQYKQ	10	Unmodified	_VEHLLRQYKQ_					0	0	0			REV__ENST00000547345.5_1_12:57928805-57940846:-|nuORF	REV__ENST00000547345.5_1_12:57928805-57940846:-|nuORF	MSMS	HCT116MG_D190212_S1	1	438.58111572265625	3	438.582333	1312.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.249	1	16.249	15.749	16.749	0								0	0	0	0.92607	1	5455	5455		5.7834	1.3773	1		+		35390	10342	22519	22640	34073	34073					0.0813155510006709
VEHNYYVSA	9	Unmodified	_VEHNYYVSA_					0	0	0		DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant;ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	541.2510986328125	2	541.251089	1080.48762	0.77785	0.00042101	-0.18402	-9.96E-05	0.59383	0.00032141	541.2508620879302	28.818	0.2093	28.818	28.641	28.851	0					9	3	3	0	0	0	0.023778	1	10517	10517		92.653	17.724	1	13768000			35391	647	22520	22641	34074	34074					-0.04940010833138331
VEHNYYVSA	9	Unmodified	_VEHNYYVSA_					0	0	0		DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant;ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	541.251220703125	2	541.251089	1080.48762	0.52654	0.00028499	-0.26823	-0.00014518	0.2583	0.00013981	541.2507835318894	29.19	0.25492	28.874	28.709	28.964	-0.31613					10	4	3	0	0	0	0.023778	2	10688	10644;10688		92.653	27.418	1	103400000			35392	647	22520	22641	34075;34076	34076					-0.04940010833138331
VEHNYYVSA	9	Unmodified	_VEHNYYVSA_					0	0	0		DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant;ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	541.2510986328125	2	541.251089	1080.48762	0.57501	0.00031123	-0.44374	-0.00024017	0.13128	7.1054E-05	541.2508706791514	29.242	0.46857	29.02	28.838	29.306	-0.22195					18	8	4	0	0	0	0.023778	1	10606	10606		92.653	27.418	1	21851000			35393	647	22520	22641	34077	34077					-0.04940010833138331
VEHNYYVSA	9	Unmodified	_VEHNYYVSA_					0	0	0		DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant;ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	541.2515869140625	2	541.251089	1080.48762	0.43375	0.00023477	-0.33257	-0.00018001	0.10117	5.4761E-05	541.2508654452578	29.343	0.2597	28.994	28.877	29.137	-0.34921					7	4	2	0	0	0	0.17622	1	10622	10622		43.772	14.691	1	4532500			35394	647	22520	22641	34078	34078					-0.04940010833138331
VEHQRHYFHRE	11	Unmodified	_VEHQRHYFHRE_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MSMS	HCT116MG_D190212_S2	2	769.3749389648438	2	769.373998	1536.73344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.515	1	31.267	30.767	31.767	-0.24883								0	0	0	0.95343	1	11629	11629		4.5289	2.0304	1		+		35395	12486	22521	22642	34079	34079					-0.013454979305834058
VEHSGRVF	8	Unmodified	_VEHSGRVF_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;ENST00000523843.5_1_5:171295765-171296739:-|nuORF;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	HCT116MG_D190212_S2	2	465.74346923828125	2	465.743234	929.471915	0.27981	0.00013032	0.58189	0.00027101	0.8617	0.00040133	465.74327188370523	25.144	0.51962	24.769	24.349	24.868	-0.37521					13	9	2	0	0	0	0.57666	1	9004	9004		34.402	12.655	1	7717900			35396	1276	22522	22643	34080	34080					0.004357474404855566
VEIDKDFKKR	10	Unmodified	_VEIDKDFKKR_					0	0	0			REV__tr|U7SV14|U7SV14_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01471PE=4SV=1	REV__tr|U7SV14|U7SV14_FUSNUAlpha/betahydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01471PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	639.36279296875	2	639.364244	1276.71394	0.60677	0.00038795	-1.2816	-0.00081939	-0.6748	-0.00043145	639.3627085032934	48.947	0.25939	48.947	48.819	49.079	0					9	4	3	0	0	0	0.87239	1	18652	18652		5.2969	0	1	8781800	+		35397	17839	22523	22644	34081	34081					0.08664733005934977
VEIEYVEKY	9	Unmodified	_VEIEYVEKY_					0	0	0		ENST00000478869.1_1_2:203760778-203765795:-|nuORF;ENSG00000138442|ENST00000261015|WDR12	ENST00000478869.1_1_2:203760778-203765795:-|nuORF	ENST00000478869.1_1_2:203760778-203765795:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	586.2982788085938	2	586.297704	1170.58086	0.36622	0.00021471	0.089507	5.2478E-05	0.45573	0.00026719	586.2975564601081	39.475	0.20631	39.475	39.294	39.501	0					5	3	2	0	0	0	0.030039	1	14814	14814		86.332	24.974	1	10755000			35398	3560	22524	22645	34082	34082					0.0023886882945589605
VEIILHVV	8	Unmodified	_VEIILHVV_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000534590.5_1_11:244044-244236:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	HCT116MG_D190212_S1	1	461.2921142578125	2	461.292028	920.569503	0.074233	3.4243E-05	0.37839	0.00017455	0.45262	0.00020879	461.2921801878382	51.832	0.21182	51.832	51.704	51.916	0					6	3	2	0	0	0	0.5791	1	19840	19840		34.187	23.073	1	10393000			35399	5838	22525	22646	34083	34083					0.10604136316624135
VEIILHVV	8	Unmodified	_VEIILHVV_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000534590.5_1_11:244044-244236:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	HCT116MG_D190212_S2	2	461.2918395996094	2	461.292028	920.569503	0.34639	0.00015979	0.21287	9.8194E-05	0.55925	0.00025798	461.2920330766975	51.941	0.20631	51.758	51.629	51.835	-0.18369					6	3	2	0	0	0	0.15838	1	19949	19949		81.864	36.114	1	20980000			35400	5838	22525	22646	34084	34084					0.10604136316624135
VEIITKEF	8	Unmodified	_VEIITKEF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;nc|ENSG00000165688|Q10713-2|PMPCA;CCDC47-PMPCA|1|fusion;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	MSMS	HCT116MG_D190212_S1	1	489.7789306640625	2	489.778951	977.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.473	1	43.473	42.973	43.973	0								0	0	0	0.20922	1	16424	16424		66.457	14.188	1				35401	4791;8067	22526	22647	34085	34085					0.05367822354469354
VEIITKEF	8	Unmodified	_VEIITKEF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;nc|ENSG00000165688|Q10713-2|PMPCA;CCDC47-PMPCA|1|fusion;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	HCT116MG_D190212_S2	2	489.7790832519531	2	489.778951	977.543348	0.091788	4.4956E-05	0.12545	6.1442E-05	0.21724	0.0001064	489.7789837109408	43.402	0.361	43.329	43.2	43.561	-0.073376					12	6	3	0	0	0	0.054833	1	16458	16458		118.07	25.577	1	85182000			35402	4791;8067	22526	22647	34086	34086					0.05367822354469354
VEIITKEF	8	Unmodified	_VEIITKEF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;nc|ENSG00000165688|Q10713-2|PMPCA;CCDC47-PMPCA|1|fusion;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	MSMS	HCT116MG_D190212_S3	3	489.77899169921875	2	489.778951	977.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.689	1	43.382	42.882	43.882	-0.30616								0	0	0	0.10614	1	16309	16309		82.529	21.172	1				35403	4791;8067	22526	22647	34087	34087					0.05367822354469354
VEIITKEF	8	Unmodified	_VEIITKEF_					0	0	0		ENSG00000165688|ENST00000371717|PMPCA;nc|ENSG00000165688|Q10713-2|PMPCA;CCDC47-PMPCA|1|fusion;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA;ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	HCT116MG_D190212_S4	4	489.7792663574219	2	489.778951	977.543348	-0.021715	-1.0636E-05	0.3998	0.00019581	0.37809	0.00018518	489.77905157113486	43.783	0.15179	43.408	43.315	43.467	-0.37433					4	2	2	0	0	0	0.38307	1	16126	16126		51.63	13.656	1	3929500			35404	4791;8067	22526	22647	34088	34088					0.05367822354469354
VEIKDVRIPV	10	Unmodified	_VEIKDVRIPV_					0	0	0		nc|ENSG00000133115|Q8TAV4-2|STOML3;ENSG00000133115|ENST00000379631|STOML3	nc|ENSG00000133115|Q8TAV4-2|STOML3	nc|ENSG00000133115|Q8TAV4-2|STOML3	MSMS	HCT116MG_D190212_S4	4	584.6680908203125	2	584.358431	1166.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.701	1	52.361	51.861	52.861	-0.34023								0	0	0	0.95351	1	19654	19654		3.9444	0.3479	1				35405	3228	22527	22648	34089	34089					0.12562535982578993
VEILVDELI	9	Unmodified	_VEILVDELI_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	HCT116MG_D190212_S2	2	521.8060302734375	2	521.805165	1041.59578	0.54414	0.00028393	1.47	0.00076707	2.0142	0.001051	521.8057595568447	44.641	0.52018	44.556	44.274	44.794	-0.084797					13	9	2	0	0	0	0.32162	1	16956	16956		28.487	5.3384	1	11370000	+		35406	10896	22528	22649	34090	34090					0.07664360697435768
VEINIDHKF	9	Unmodified	_VEINIDHKF_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	HCT116MG_D190212_S1	1	372.2010803222656	3	372.201229	1113.58186	-0.15751	-5.8624E-05	-0.23815	-8.8639E-05	-0.39565	-0.00014726	372.2012503165957	37.785	0.2606	37.785	37.655	37.916	0					6	4	2	0	0	0	0.73263	1	14152	14152		1.7423	0	1	8275400			35407	2480	22529	22650	34091	34091					0.02961127988987755
VEINIDHKF	9	Unmodified	_VEINIDHKF_					0	0	0		nc|ENSG00000115677|Q00341-2|HDLBP;ENSG00000115677|ENST00000310931|HDLBP;HDLBP|p.S551Kfs*2|1|0.11|ENSG00000115677|chr2:241248082-241248083|-/T|frameshift_variant	nc|ENSG00000115677|Q00341-2|HDLBP	nc|ENSG00000115677|Q00341-2|HDLBP	MSMS	HCT116MG_D190212_S1	1	557.7986450195312	2	557.798206	1113.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.833	1	37.833	37.333	38.333	0								0	0	0	0.26976	1	14147	14147		42.312	12.875	1				35408	2480	22529	22650	34092	34092					0.02961127988987755
VEIQGVIDP	9	Unmodified	_VEIQGVIDP_					0	0	0		ENST00000372291.3_1_20:44698963-44718582:-|nuORF	ENST00000372291.3_1_20:44698963-44718582:-|nuORF	ENST00000372291.3_1_20:44698963-44718582:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	485.2662353515625	2	485.266207	968.517862	0.32431	0.00015737	0.000996	4.8333E-07	0.3253	0.00015786	485.26632049474705	46.692	0.31134	46.692	46.543	46.855	0					8	5	2	0	0	0	0.24534	1	17748	17748		36.506	1.5741	1	7173600			35409	7454	22530	22651	34093	34093					0.032343478320512986
VEIRRKWYNG	10	Unmodified	_VEIRRKWYNG_					0	0	0			REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL	REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL	MSMS	HCT116MG_D190212_S2	2	440.9109802246094	3	440.910561	1319.70985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.283	1	48.139	47.639	48.639	-0.1437								0	0	0	0.93202	1	18442	18442		5.0475	1.2016	1		+		35410	10510	22531	22652	34094	34094					0.06278688302882074
VEKAELEVA	9	Unmodified	_VEKAELEVA_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	HCT116MG_D190212_S2	2	494.27130126953125	2	494.27149	986.528426	0.21873	0.00010811	0.35637	0.00017614	0.57509	0.00028425	494.271375602746	32.543	0.31261	32.313	32.15	32.463	-0.23009					8	5	2	0	0	0	0.10244	1	12061	12061		57.722	4.318	1	16002000	+		35411	11844	22532	22653	34095	34095					0.03462330486479459
VEKAELEVA	9	Unmodified	_VEKAELEVA_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	494.27149	986.528426	0.21873	0.00010811	0.35637	0.00017614	0.57509	0.00028425	494.271375602746	32.543	0.31261	32.313	32.15	32.463	-0.23009	-0.0065512	0.00056397	NaN	57.722	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16002000	+		35412	11844	22532	22653							0.03462330486479459
VEKAELEVA	9	Unmodified	_VEKAELEVA_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	494.27149	986.528426	0.33729	0.00016671	-0.39098	-0.00019325	-0.053693	-2.6539E-05	494.2712738926809	32.611	0.26023	32.326	32.144	32.404	-0.28511	0.0065512	-0.00017482	NaN	57.722	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6225500	+		35413	11844	22532	22653							0.03462330486479459
VEKAHTEF	8	Unmodified	_VEKAHTEF_					0	0	0		KIAA1755|p.A883T|1|0.24|ENSG00000149633|chr20:38218276-38218276|C/T|missense_variant	KIAA1755|p.A883T|1|0.24|ENSG00000149633|chr20:38218276-38218276|C/T|missense_variant	KIAA1755|p.A883T|1|0.24|ENSG00000149633|chr20:38218276-38218276|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	480.74322509765625	2	480.742899	959.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.905	1	21.52	21.02	22.02	-0.38503								0	0	0	0.26903	1	7733	7733		58.679	4.846	1				35414	9261	22533	22654	34096	34096					-0.010110919992371237
VEKAKKKKKKK	11	Unmodified	_VEKAKKKKKKK_					0	0	0			REV__ENSG00000130826|ENST00000369550|DKC1	REV__ENSG00000130826|ENST00000369550|DKC1	MSMS	HCT116MG_D190212_S1	1	671.9657592773438	2	671.966471	1341.91839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.657	1	46.657	46.157	47.157	0								0	0	0	0.9598	1	17708	17708		1.1933	0	1		+		35415	11941	22534	22655	34097	34097					0.26110716887092167
VEKCLDKYF	9	Unmodified	_VEKCLDKYF_					0	0	0		ENSG00000102901|ENST00000562787|CENPT;ENST00000574569.1_1_16:67862375-67862787:-|nuORF;ENST00000569862.5_1_16:67862172-67864187:-|nuORF;ENST00000562513.6_1_16:67862078-67865741:-|nuORF	ENSG00000102901|ENST00000562787|CENPT	ENSG00000102901|ENST00000562787|CENPT	MSMS	HCT116MG_D190212_S4	4	572.7905883789062	2	572.788992	1143.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.284	1	40.907	40.407	41.407	-0.37732								0	0	0	0.76862	1	15177	15177		5.7319	0	1				35416	1857	22535	22656	34098	34098					-0.0026074997724663262
VEKDFIAF	8	Unmodified	_VEKDFIAF_					0	0	0		ENST00000529565.1_1_11:104819221-104819389:-|nuORF;ENST00000534356.1_1_11:104817674-104819389:-|nuORF;nc|ENSG00000204403|Q6UXS9-4|CASP12;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENSG00000196954|ENST00000444739|CASP4	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	ENST00000529565.1_1_11:104819221-104819389:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.7575988769531	2	484.758018	967.501483	0.14913	7.2294E-05	-0.34516	-0.00016732	-0.19603	-9.5027E-05	484.7576201119122	50.968	0.20654	50.789	50.655	50.862	-0.17868					8	3	3	0	0	0	0.1893	1	19556	19556		75.761	8.417	1	8100900			35417	6108	22536	22657	34099	34099					0.01643266665939791
VEKFLKLM	8	Unmodified	_VEKFLKLM_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MSMS	HCT116MG_D190212_S4	4	504.301513671875	2	504.301539	1006.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.904	1	35.518	35.018	36.018	-0.38606								0	0	0	0.8837	1	13118	13118		2.3027	0	1		+		35418	13798	22537	22658	34100	34100					0.08549349616009749
VEKKIDKY	8	Unmodified	_VEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S1	1	511.7976989746094	2	511.797675	1021.5808	0.42601	0.00021803	-0.08285	-4.2403E-05	0.34316	0.00017563	511.7975074756752	16.759	0.31252	16.759	16.629	16.942	0					12	5	4	0	0	0	0.048586	1	5683	5683		125.04	39.396	1	31218000			35419	3762	22538	22659	34101	34101					0.07086913620082669
VEKKIDKY	8	Unmodified	_VEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S2	2	511.7978210449219	2	511.797675	1021.5808	0.28469	0.0001457	0.11764	6.0208E-05	0.40233	0.00020591	511.7976496653441	17.458	0.41804	17.108	16.925	17.343	-0.34933					20	7	4	0	0	0	0.0052776	1	5943	5943		171.09	52.191	1	160810000			35420	3762	22538	22659	34102	34102					0.07086913620082669
VEKKIDKY	8	Unmodified	_VEKKIDKY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-SECPEP	HCT116MG_D190212_S3	3	512.2462768554688	2	511.797675	1021.5808	0.13822	7.0742E-05	-0.091887	-4.7027E-05	0.046336	2.3715E-05	511.79757963421383	15.814	0.15629	15.899	15.769	15.925	0.085423					4	2	2	0	0	0	0.17	1	5210	5210		59.052	13.353	1	3054000			35421	3762	22538	22659	34103	34103					0.07086913620082669
VEKKSSAS	8	Unmodified	_VEKKSSAS_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-3|FMN1	REV__nc|ENSG00000248905|Q68DA7-3|FMN1	MSMS	HCT116MG_D190212_S3	3	418.2281494140625	2	418.229625	834.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.409	1	26.26	25.76	26.76	-0.14924								0	0	0	0.8837	1	9473	9473		2.5775	0	1		+		35422	17308	22539	22660	34104	34104					0.020852191094377304
VEKLMSPRLPT	11	Unmodified	_VEKLMSPRLPT_					0	0	0		ENST00000497086.5_1_1:153604654-153606515:-|nuORF	ENST00000497086.5_1_1:153604654-153606515:-|nuORF	ENST00000497086.5_1_1:153604654-153606515:-|nuORF	MSMS	HCT116MG_D190212_S2	2	635.8157348632812	2	635.863023	1269.71149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.559	1	39.482	38.982	39.982	-0.077835								0	0	0	0.94145	1	14893	14893		10.8	2.644	1				35423	8395	22540	22661	34105	34105					0.08742561276608285
VEKLRKFRFRK	11	Unmodified	_VEKLRKFRFRK_					0	0	0		ENST00000553952.1_1_14:54950332-54955663:-|nuORF;ENST00000554682.1_1_14:54948855-54955663:-|nuORF;ENST00000554163.5_1_14:54948056-54950476:-|nuORF;ENSG00000197045|ENST00000358056|GMFB	ENST00000553952.1_1_14:54950332-54955663:-|nuORF	ENST00000553952.1_1_14:54950332-54955663:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	753.47216796875	2	753.972619	1505.93069	0.81359	0.00061342	0.75469	0.00056901	1.5683	0.0011824	753.9731143353656	56.352	0.20656	56.352	56.222	56.428	0					7	3	3	0	0	0	0.36614	1	21670	21670		0	0	1	44030000			35424	6115	22541	22662	34106	34106					0.19795753350126688
VEKMRQSVLE	10	Unmodified	_VEKMRQSVLE_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MSMS	HCT116MG_D190212_S2	2	609.8284912109375	2	609.82918	1217.64381	0.7305	0.00044548	-0.51257	-0.00031258	0.21793	0.0001329	609.8286478276258	41.625	0.25661	41.557	41.396	41.653	-0.068199					7	4	2	0	0	0	0.86862	1	15745	15745		6.2058	0	1	13393000			35425	1037	22542	22663	34107	34107					0.043691113458407926
VEKMRQSVLE	10	Unmodified	_VEKMRQSVLE_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MATCH	HCT116MG_D190212_S1	1		2	609.82918	1217.64381	0.88977	0.00054261	-0.16651	-0.00010154	0.72326	0.00044107	609.8290609626624	41.617	0.2083	41.617	41.445	41.654	0	0.030045	0.00017775	NaN	6.2058	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5913500			35426	1037	22542	22663							0.043691113458407926
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	HCT116MG_D190212_S1	1	435.25811767578125	2	435.258185	868.501818	0.079185	3.4466E-05	0.20824	9.0638E-05	0.28742	0.0001251	435.25817083540045	24.019	0.36597	24.019	23.837	24.202	0					14	6	3	0	0	0	0.030039	1	8576	8576		86.332	14.41	1	34634000			35427	3129	22543	22664	34108	34108					0.06230686385811168
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	HCT116MG_D190212_S1	1	869.5108642578125	1	869.509094	868.501818	0.77593	0.00067468	0.39844	0.00034645	1.1744	0.0010211	869.5095479937974	24.019	0.31368	24.019	23.889	24.202	0					7	5	2	0	0	0	0.012596	1	8588	8588		106.94	35.807	1	4917700			35428	3129	22543	22664	34109	34109					0.06230686385811168
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	HCT116MG_D190212_S2	2	435.25836181640625	2	435.258185	868.501818	0.14912	6.4907E-05	0.18024	7.8451E-05	0.32936	0.00014336	435.25814729882694	24.489	0.36513	24.108	23.926	24.292	-0.38003					14	6	3	0	0	0	0.045679	1	8762	8762		76.825	11.59	1	96923000			35429	3129	22543	22664	34110	34110					0.06230686385811168
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	HCT116MG_D190212_S2	2	869.50927734375	1	869.509094	868.501818	0.95284	0.0008285	-0.21322	-0.0001854	0.73961	0.0006431	869.5088017434197	24.489	0.26055	24.108	23.926	24.187	-0.38003					8	4	2	0	0	0	0.0080847	1	8780	8780		118.07	36.455	1	25761000			35430	3129	22543	22664	34111	34111					0.06230686385811168
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MSMS	HCT116MG_D190212_S3	3	435.2582092285156	2	435.258185	868.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.075	1	24.014	23.514	24.514	-0.061449								0	0	0	0.35515	1	8532	8532		36.127	6.2864	1				35431	3129	22543	22664	34112	34112					0.06230686385811168
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;GSE1|p.P1093Qfs*45|1|0.45|ENSG00000131149|chr16:85668282-85668282|C/-|frameshift_variant;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	435.258185	868.501818	0.06226	2.7099E-05	0.088951	3.8717E-05	0.15121	6.5816E-05	435.2582511733596	23.982	0.2085	23.921	23.791	23.999	-0.061449	-0.095337	-6.1552E-05	NaN	86.332	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2127100			35432	3129	22543	22664							0.06230686385811168
VEKREVIY	8	Unmodified	_VEKREVIY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.3173828125	2	518.295299	1034.57605	0.27276	0.00014137	1.0767	0.00055804	1.3494	0.00069941	518.2957640776023	46.042	0.15455	45.941	45.863	46.017	-0.1014					4	2	2	0	0	0	0.30313	1	17506	17506		14.838	0.93222	1	7212700	+		35433	12706	22544	22665	34113	34113					0.060140294773418645
VELAETVP	8	Unmodified	_VELAETVP_					0	0	0			REV__nc|ENSG00000053747|Q16787-4|LAMA3	REV__nc|ENSG00000053747|Q16787-4|LAMA3	MSMS	HCT116MG_D190212_S3	3	429.0887451171875	2	429.234376	856.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.906	1	26.737	26.237	27.237	-0.16933								0	0	0	0.8837	1	9673	9673		9.3474	0.75416	1		+		35434	10629	22545	22666	34114	34114					0.020229873949688226
VELAQLKYR	9	Unmodified	_VELAQLKYR_					0	0	0		tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	560.3280029296875	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.257	1	39.956	39.456	40.456	-0.30149								0	0	0	0.76834	1	14939	14939		6.7232	0	1				35435	18311	22546	22667	34115	34115					0.09021693777026485
VELKLRPLK	9	Unmodified	_VELKLRPLK_					0	0	0			REV__ENST00000459929.5_1_1:185275751-185278625:-|nuORF	REV__ENST00000459929.5_1_1:185275751-185278625:-|nuORF	MSMS	HCT116MG_D190212_S3	3	548.3640747070312	2	548.366059	1094.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.02	1	46.706	46.206	47.206	-0.31405								0	0	0	0.76902	1	17646	17646		4.3292	0	1		+		35436	11588	22547	22668	34116	34116					0.17399447570437587
VELLKLLVM	9	Unmodified	_VELLKLLVM_					0	0	0			REV__nc|ENSG00000110077|Q9H2W1-5|MS4A6A	REV__nc|ENSG00000110077|Q9H2W1-5|MS4A6A	MSMS	HCT116MG_D190212_S1	1	353.2283020019531	3	353.22784	1056.66169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.765	1	59.765	59.265	60.265	0								0	0	0	0.77008	1	23034	23034		0.26902	0	1		+		35437	17105	22548	22669	34117	34117					0.13562478338644723
VELLLPTP	8	Unmodified	_VELLLPTP_					0	0	0		WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant;WDR72|p.R714Nfs*19|1|0.09|ENSG00000166415|chr15:53616065-53616066|-/CAGT|frameshift_variant;WDR72|p.M778Cfs*9|2|0.19|ENSG00000166415|chr15:53615874-53615874|T/-|frameshift_variant;ENSG00000166415|ENST00000360509|WDR72	WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant	WDR72|p.R714Tfs*5|1|0.09|ENSG00000166415|chr15:53616067-53616068|-/ATTCTATGGTGGTG|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	441.2704162597656	2	441.270761	880.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.164	1	35.164	34.664	35.664	0								0	0	0	0.8837	1	13071	13071		9.3474	3.587	1				35438	4850	22549	22670	34118	34118					0.08192741188372565
VELLQMEQV	9	Oxidation (M)	_VELLQM(Oxidation (M))EQV_		VELLQM(1)EQV		VELLQM(52)EQV	0	0	1		nc|ENSG00000184313|Q68CQ1-1|MROH7;MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;MROH7|p.R997Q|1|0.22|ENSG00000184313|chr1:54700346-54700346|G/A|missense_variant	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MULTI-MSMS	HCT116MG_D190212_S2	2	552.7838745117188	2	552.783907	1103.55326	0.37812	0.00020902	1.7315	0.00095716	2.1096	0.0011662	552.784877304402	35.137	0.3626	34.979	34.709	35.072	-0.15834					8	6	2	0	0	0	0.13316	1	13107	13107		51.63	7.648	1	32735000			35439	9576	22550	22671	34119	34119		146			0.005626422975410605
VELLQMEQV	9	Oxidation (M)	_VELLQM(Oxidation (M))EQV_					0	0	1		nc|ENSG00000184313|Q68CQ1-1|MROH7;MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;MROH7|p.R997Q|1|0.22|ENSG00000184313|chr1:54700346-54700346|G/A|missense_variant	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	552.783907	1103.55326	0.71092	0.00039299	1.3716	0.00075821	2.0825	0.0011512	552.7849370929761	35.367	0.21452	35.068	34.905	35.12	-0.29922	0.044423	-5.3732E-05	NaN	51.63	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14692000			35440	9576	22550	22671				146			0.005626422975410605
VELLVLRHL	9	Unmodified	_VELLVLRHL_					0	0	0			REV__TDRD6|p.C440Wfs*5|1|0.13|ENSG00000180113|chr6:46689446-46689447|-/G|frameshift_variant	REV__TDRD6|p.C440Wfs*5|1|0.13|ENSG00000180113|chr6:46689446-46689447|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	546.3487548828125	2	546.350409	1090.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.959	1	32.576	32.076	33.076	-0.38223								0	0	0	0.7689	1	12025	12025		4.756	0	1		+		35441	13652	22551	22672	34120	34120					0.14454874536363604
VELNKELYKKR	11	Unmodified	_VELNKELYKKR_					0	0	0			REV__tr|U7SVJ4|U7SVJ4_FUSNUMiaB-liketRNAmodifyingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01249PE=4SV=1	REV__tr|U7SVJ4|U7SVJ4_FUSNUMiaB-liketRNAmodifyingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01249PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	710.41748046875	2	710.419551	1418.82455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.813	1	42.508	42.008	43.008	-0.30472								0	0	0	0.95113	1	15960	15960		5.7319	0.43497	1		+		35442	17843	22552	22673	34121	34121					0.131889529941418
VELQRNPP	8	Unmodified	_VELQRNPP_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;ENST00000487406.2_1_9:133495824-133506568:+|nuORF	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	HCT116MG_D190212_S2	2	476.76416015625	2	476.764166	951.513779	0.26895	0.00012823	-0.72566	-0.00034597	-0.45671	-0.00021774	476.76389416926287	24.84	0.25899	24.465	24.349	24.608	-0.37521					6	4	2	0	0	0	0.69862	1	8960	8960		23.148	5.0134	1	9584300			35443	2104	22553	22674	34122	34122					0.036083031289877
VELRHKQK	8	Unmodified	_VELRHKQK_					0	0	0			REV__ENSG00000179562|ENST00000321407|GCC1	REV__ENSG00000179562|ENST00000321407|GCC1	MSMS	HCT116MG_D190212_S4	4	519.314208984375	2	519.314358	1036.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.958	1	37.575	37.075	38.075	-0.38283								0	0	0	0.8837	1	13897	13897		0.69038	0	1		+		35444	13642	22554	22675	34123	34123					0.09731960182648436
VELRVLALP	9	Unmodified	_VELRVLALP_					0	0	0		LRFN4|p.G524Vfs*100|1|0.26|ENSG00000173621|chr11:66859853-66859853|G/-|frameshift_variant;LRFN4|p.V623*|1|0.31|ENSG00000173621|chr11:66860149-66860149|G/-|frameshift_variant;LRFN4|p.A544Pfs*80|1|0.23|ENSG00000173621|chr11:66859912-66859912|G/-|frameshift_variant;ENSG00000173621|ENST00000309602|LRFN4	LRFN4|p.G524Vfs*100|1|0.26|ENSG00000173621|chr11:66859853-66859853|G/-|frameshift_variant	LRFN4|p.G524Vfs*100|1|0.26|ENSG00000173621|chr11:66859853-66859853|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	505.3236999511719	2	505.32386	1008.63317	0.3779	0.00019096	-0.2807	-0.00014184	0.097198	4.9117E-05	505.3236910752733	56.454	0.3611	56.454	56.222	56.583	0					12	6	3	0	0	0	0.042978	1	21708	21708		78.149	0	1	53017000			35445	9301	22555	22676	34124	34124					0.12919496753693238
VELRVLALP	9	Unmodified	_VELRVLALP_					0	0	0		LRFN4|p.G524Vfs*100|1|0.26|ENSG00000173621|chr11:66859853-66859853|G/-|frameshift_variant;LRFN4|p.V623*|1|0.31|ENSG00000173621|chr11:66860149-66860149|G/-|frameshift_variant;LRFN4|p.A544Pfs*80|1|0.23|ENSG00000173621|chr11:66859912-66859912|G/-|frameshift_variant;ENSG00000173621|ENST00000309602|LRFN4	LRFN4|p.G524Vfs*100|1|0.26|ENSG00000173621|chr11:66859853-66859853|G/-|frameshift_variant	LRFN4|p.G524Vfs*100|1|0.26|ENSG00000173621|chr11:66859853-66859853|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	505.32386	1008.63317	0.54726	0.00027654	-0.8749	-0.00044211	-0.32764	-0.00016556	505.3233658364009	56.573	0.31696	56.391	56.207	56.524	-0.18261	-0.031589	-0.00023564	NaN	78.149	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47808000			35446	9301	22555	22676							0.12919496753693238
VEMEELTSKY	10	Unmodified	_VEMEELTSKY_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MSMS	HCT116MG_D190212_S2	2	614.8606567382812	2	614.791929	1227.5693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.155	1	39.077	38.577	39.577	-0.077835								0	0	0	0.92272	1	14728	14728		10.824	0	1				35447	3876	22556	22677	34125	34125					-0.035376962562168046
VEMMEQSQ	8	Unmodified	_VEMMEQSQ_					0	0	0			REV__PPP1R7|p.N73Tfs*11|1|0.3|ENSG00000115685|chr2:241157842-241157842|A/-|frameshift_variant	REV__PPP1R7|p.N73Tfs*11|1|0.3|ENSG00000115685|chr2:241157842-241157842|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	491.2046813964844	2	491.204435	980.394317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.104	1	21.104	20.604	21.604	0								0	0	0	0.87079	1	7408	7408		16.942	7.5592	1		+		35448	11554	22557	22678	34126	34126					-0.09666394602220407
VEMTVPIIL	9	Unmodified	_VEMTVPIIL_					0	0	0			REV__ENSG00000156113|ENST00000286628|KCNMA1	REV__ENSG00000156113|ENST00000286628|KCNMA1	MSMS	HCT116MG_D190212_S3	3	507.8009033203125	2	507.798829	1013.5831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.088	1	37.786	37.286	38.286	-0.30137								0	0	0	0.76575	1	14097	14097		15.847	0.5987	1		+		35449	12718	22558	22679	34127	34127					0.07685626033537574
VENIQRVAA	9	Unmodified	_VENIQRVAA_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S1	1	500.2823791503906	2	500.282723	998.550893	0.47975	0.00024001	1.887	0.00094404	2.3668	0.001184	500.2837377080915	26.319	0.46956	26.319	25.927	26.397	0					10	8	2	0	0	0	0.22946	1	9530	9530		38.176	14.155	1	9262000			35450	5303	22559	22680	34128	34128					0.05155974674744357
VENIQRVAA	9	Unmodified	_VENIQRVAA_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S2	2	500.2826843261719	2	500.282723	998.550893	0.33469	0.00016744	-0.22056	-0.00011034	0.11413	5.7098E-05	500.28259629967704	26.671	0.26074	26.31	26.18	26.441	-0.36164					7	4	2	0	0	0	0.032914	1	9667	9667		83.429	37.729	1	22126000			35451	5303	22559	22680	34129	34129					0.05155974674744357
VENIQRVAA	9	Unmodified	_VENIQRVAA_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	HCT116MG_D190212_S3	3	500.28271484375	2	500.282723	998.550893	0.56657	0.00028345	-0.68537	-0.00034288	-0.1188	-5.9434E-05	500.2823618457853	26.482	0.20831	26.333	26.203	26.411	-0.14924					6	3	2	0	0	0	0.066823	1	9525	9525		66.457	28.483	1	4602700			35452	5303	22559	22680	34130	34130					0.05155974674744357
VENLIPPVQH	10	Unmodified	_VENLIPPVQH_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7;WDR7|p.S493Qfs*3|1|0.08|ENSG00000091157|chr18:56696357-56696357|T/-|frameshift_variant;WDR7|p.K551Nfs*3|1|0.2|ENSG00000091157|chr18:56718033-56718033|A/-|frameshift_variant;WDR7|p.L1146Hfs*7|1|0.04|ENSG00000091157|chr18:56880075-56880076|-/ATAGAATCTCAACT|frameshift_variant	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-MSMS	HCT116MG_D190212_S2	2	573.3240356445312	2	573.319306	1144.62406	0.23199	0.00013301	0.33122	0.0001899	0.56322	0.0003229	573.319329137279	37.257	0.36084	37.154	36.974	37.335	-0.10318					12	6	3	0	0	0	0.7974	1	13891	13891		12.241	0	1	37089000			35453	1556	22560	22681	34131	34131					0.05753103397364612
VENVLVVGII	10	Unmodified	_VENVLVVGII_					0	0	0		ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant	ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant	ZBTB41|p.I624Yfs*88|2|0.31|ENSG00000177888|chr1:197176573-197176573|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	352.71234130859375	3	352.221742	1053.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.815	1	33.43	32.93	33.93	-0.38426								0	0	0	0.96404	1	12323	12323		1.5923	0	1				35454	18706	22561	22682	34132	34132					0.11872059688289482
VEPDHFKVA	9	Unmodified	_VEPDHFKVA_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	HCT116MG_D190212_S1	1	521.27197265625	2	521.271824	1040.5291	0.6522	0.00033997	-0.1753	-9.138E-05	0.47689	0.00024859	521.2716932459356	28.398	0.37182	28.398	28.216	28.588	0					14	6	3	0	0	0	0.045679	2	10346	10336;10346		76.825	38.851	1	50103000			35455	3164	22562	22683	34133;34134	34134					0.010451699261921021
VEPDHFKVA	9	Unmodified	_VEPDHFKVA_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	HCT116MG_D190212_S2	2	521.2721557617188	2	521.271824	1040.5291	0.29176	0.00015208	0.29869	0.0001557	0.59045	0.00030779	521.2719186610553	28.846	0.3057	28.53	28.352	28.657	-0.31613					12	5	3	0	0	0	0.045679	1	10543	10543		76.825	42.423	1	142580000			35456	3164	22562	22683	34135	34135					0.010451699261921021
VEPDHFKVA	9	Unmodified	_VEPDHFKVA_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MATCH	HCT116MG_D190212_S3	3		2	521.271824	1040.5291	0.50947	0.00026557	0.3585	0.00018687	0.86797	0.00045245	521.2717758049735	28.773	0.20809	28.551	28.421	28.629	-0.22195	0.05829	0.00042374	NaN	76.825	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3104100			35457	3164	22562	22683							0.010451699261921021
VEPEKKISVPI	11	Unmodified	_VEPEKKISVPI_					0	0	0			REV__SLK|p.C993Sfs*3|1|0.35|ENSG00000065613|chr10:104018249-104018250|-/GA|frameshift_variant	REV__SLK|p.C993Sfs*3|1|0.35|ENSG00000065613|chr10:104018249-104018250|-/GA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	619.8692016601562	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.032	1	52.729	52.229	53.229	-0.30305								0	0	0	0.95636	1	20062	20062		2.9952	0.93549	1		+		35458	10706	22563	22684	34136	34136					0.11883385434225602
VEPETEVVGP	10	Unmodified	_VEPETEVVGP_					0	0	0		ENSG00000117877|ENST00000309424|POLR1G;nc|ENSG00000117877|O15446-2|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	MSMS	HCT116MG_D190212_S4	4	528.2665405273438	2	528.266404	1054.51826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.679	1	54.356	53.856	54.856	-0.32349								0	0	0	0.92272	1	20452	20452		10.824	0.75	1				35459	2591	22564	22685	34137	34137					-0.006822772387522491
VEPIKKHEV	9	Unmodified	_VEPIKKHEV_					0	0	0		PSAP|p.A309V|1|0.07|ENSG00000197746|chr10:71820319-71820319|G/A|missense_variant;PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant;ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	PSAP|p.A309V|1|0.07|ENSG00000197746|chr10:71820319-71820319|G/A|missense_variant	PSAP|p.A309V|1|0.07|ENSG00000197746|chr10:71820319-71820319|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	360.21282958984375	3	360.213358	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.594	1	30.31	29.81	30.81	-0.28441								0	0	0	0.76793	1	11255	11255		8.1555	0	1				35460	6170	22565	22686	34138	34138					0.0825400488570267
VEPIKKHEV	9	Unmodified	_VEPIKKHEV_					0	0	0		PSAP|p.A309V|1|0.07|ENSG00000197746|chr10:71820319-71820319|G/A|missense_variant;PSAP|p.N426Tfs*37|1|0.2|ENSG00000197746|chr10:71819538-71819538|T/-|frameshift_variant;ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	PSAP|p.A309V|1|0.07|ENSG00000197746|chr10:71820319-71820319|G/A|missense_variant	PSAP|p.A309V|1|0.07|ENSG00000197746|chr10:71820319-71820319|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	360.2126770019531	3	360.213358	1077.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.695	1	30.435	29.935	30.935	-0.26071								0	0	0	0.76793	1	11186	11186		8.1555	0	1				35461	6170	22565	22686	34139	34139					0.0825400488570267
VEPLAAEPVKP	11	Unmodified	_VEPLAAEPVKP_					0	0	0			REV__PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant	REV__PRX|p.G1258Afs*124|1|0.2|ENSG00000105227|chr19:40394579-40394579|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	575.32958984375	2	575.329339	1148.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.592	1	32.592	32.092	33.092	0								0	0	0	0.95196	1	12032	12032		5.2969	0	1		+		35462	17446	22566	22687	34140	34140					0.07574854337326542
VEPLPLIFQIT	11	Unmodified	_VEPLPLIFQIT_					0	0	0		ENST00000313432.5_1_12:110783758-110784272:+|nuORF;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ATP2A2|p.I1027Cfs*4|1|0.37|ENSG00000174437|chr12:110346394-110346395|-/TGTGCTGCTCATAATGCCCCTGG|frameshift_variant;ENSG00000174437|ENST00000539276|ATP2A2	ENST00000313432.5_1_12:110783758-110784272:+|nuORF	ENST00000313432.5_1_12:110783758-110784272:+|nuORF	MSMS	HCT116MG_D190212_S4	4	635.376220703125	2	635.376289	1268.73803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.187	1	57.899	57.399	58.399	-0.28879								0	0	0	0.9387	1	21862	21862		12.241	1.4411	1				35463	225	22567	22688	34141	34141					0.1144057343960867
VEPRLSIKPFI	11	Unmodified	_VEPRLSIKPFI_					0	0	0			REV__NSUN6|p.F459Lfs*6|3|0.4|ENSG00000241058|chr10:18545966-18545966|A/-|frameshift_variant	REV__NSUN6|p.F459Lfs*6|3|0.4|ENSG00000241058|chr10:18545966-18545966|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	650.3969116210938	2	649.89518	1297.77581	0.6416	0.00041697	0.89173	0.00057953	1.5333	0.0009965	650.3961152387034	54.731	1.0942	54.408	54.14	55.234	-0.32348					26	20	2	0	0	0	0.74191	1	20493	20493		2.7352	0	1	2992500	+		35464	14354	22568	22689	34142	34142					0.13883084425083325
VEPRPRLKR	9	Unmodified	_VEPRPRLKR_					0	0	0		KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant;ENSG00000197077|ENST00000358431|KIAA1671;KIAA1671|p.T1322Rfs*192|1|0.18|ENSG00000197077|chr22:25041088-25041088|A/-|frameshift_variant	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	KIAA1671|p.S1569Afs*58|1|0.46|ENSG00000197077|chr22:25174289-25174289|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	575.7837524414062	2	575.862006	1149.70946	0.46657	0.00026868	-0.63481	-0.00036556	-0.16824	-9.6884E-05	576.3629595435764	56.815	0.31695	56.636	56.475	56.792	-0.17904					10	5	2	0	0	0	0.74607	1	21930	21930		2.0598	0	1	4522500			35465	9260	22569	22690	34143	34143					0.1405931337369566
VEPVCPAPQ	9	Unmodified	_VEPVCPAPQ_					0	0	0			REV__ENST00000476077.1_1_22:24179058-24181169:-|nuORF;REV__ENST00000464110.1_1_22:24179058-24180982:-|nuORF	REV__ENST00000464110.1_1_22:24179058-24180982:-|nuORF	MSMS	HCT116MG_D190212_S3	3	470.235595703125	2	470.233853	938.453153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.263	1	16.349	15.849	16.849	0.085424								0	0	0	0.46109	1	5384	5384		30.637	2.1497	1		+		35466	15913;15804	22570	22691	34144	34144					-0.018535502456074937
VEQKEELP	8	Unmodified	_VEQKEELP_					0	0	0			REV__ENST00000554624.5_1_14:90722881-90729792:+|nuORF	REV__ENST00000554624.5_1_14:90722881-90729792:+|nuORF	MSMS	HCT116MG_D190212_S4	4	486.2546081542969	2	486.25584	970.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.622	1	36.237	35.737	36.737	-0.38486								0	0	0	0.8396	1	13409	13409		19.439	1.304	1		+		35467	16454	22571	22692	34145	34145					0.01069757452387421
VEQKGLFARVY	11	Unmodified	_VEQKGLFARVY_					0	0	0			REV__ENST00000380535.8_1_17:7461620-7461785:+|nuORF	REV__ENST00000380535.8_1_17:7461620-7461785:+|nuORF	MSMS	HCT116MG_D190212_S2	2	655.3692626953125	2	655.366787	1308.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.273	1	39.195	38.695	39.695	-0.077835								0	0	0	0.91257	1	14776	14776		18.373	4.7582	1		+		35468	15271	22572	22693	34146	34146					0.07701036868547817
VEQKLLDV	8	Unmodified	_VEQKLLDV_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MSMS	HCT116MG_D190212_S4	4	472.2754211425781	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.32	1	43.946	43.446	44.446	-0.37373								0	0	0	0.71912	1	16324	16324		29.082	3.6823	1		+		35469	12614	22573	22694	34147	34147					0.0650293821172454
VEQKQRNF	8	Unmodified	_VEQKQRNF_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7802124023438	2	524.780348	1047.54614	0.37542	0.00019701	0.084706	4.4452E-05	0.46013	0.00024146	524.7803138330878	19.846	1.082	19.652	18.914	19.996	-0.19368					58	20	4	0	0	0	0.62424	1	6845	6845		30.225	2.596	1	28992000	+		35470	12582	22574	22695	34148	34148					0.024270905319781377
VEQRPNPGP	9	Unmodified	_VEQRPNPGP_					0	0	0		nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-MSMS	HCT116MG_D190212_S1	1	497.2594299316406	2	497.259248	992.503943	0.45589	0.0002267	-0.32351	-0.00016087	0.13238	6.5828E-05	497.25902314159015	20.409	0.31277	20.409	20.175	20.488	0					8	5	2	0	0	0	0.49914	1	7125	7125		16.942	3.4344	1	2190500			35471	3924	22575	22696	34149	34149					0.007391151236220139
VEQTVGKY	8	Unmodified	_VEQTVGKY_					0	0	0			REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	462.146484375	2	462.245275	922.475997	0.29408	0.00013594	0.3469	0.00016035	0.64098	0.00029629	462.24514587988205	31.102	0.15627	31.102	30.971	31.128	0					4	2	2	0	0	0	0.30262	1	11416	11416		19.439	6.9074	1	3426700	+		35472	11139	22576	22697	34150	34150					0.011657921435244134
VEQTVGKY	8	Unmodified	_VEQTVGKY_					0	0	0			REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MSMS	HCT116MG_D190212_S3	3	462.1466979980469	2	462.245275	922.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.414	1	31.143	30.643	31.643	-0.27028								0	0	0	0.8837	1	11476	11476		9.3474	0	1		+		35473	11139	22576	22697	34151	34151					0.011657921435244134
VERDGLSEA	9	Unmodified	_VERDGLSEA_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	488.24102783203125	2	488.240721	974.466889	0.27992	0.00013667	0.34641	0.00016913	0.62633	0.0003058	488.2408790283315	22.715	0.20835	22.715	22.585	22.793	0					5	3	2	0	0	0	0.14376	1	8069	8069		49.527	11.352	1	3751100			35474	1198	22577	22698	34152	34152					-0.021366012128055445
VERDGLSEA	9	Unmodified	_VERDGLSEA_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	488.24072265625	2	488.240721	974.466889	0.16781	8.193E-05	-0.038257	-1.8679E-05	0.12955	6.3252E-05	488.24064374360864	23.125	0.20825	22.74	22.622	22.83	-0.3852					6	3	2	0	0	0	0.060947	1	8260	8260		69.338	19.784	1	12119000			35475	1198	22577	22698	34153	34153					-0.021366012128055445
VERDLYLSL	9	Unmodified	_VERDLYLSL_					0	0	0		DNAJB13|p.I159Lfs*8|2|0.47|ENSG00000187726|chr11:73965012-73965012|A/-|frameshift_variant;DNAJB13|p.L230Pfs*5|1|0.35|ENSG00000187726|chr11:73968424-73968425|-/CC|frameshift_variant;DNAJB13|p.Q305Rfs*11|1|0.08|ENSG00000187726|chr11:73970073-73970073|C/-|frameshift_variant;ENSG00000187726|ENST00000339764|DNAJB13	DNAJB13|p.I159Lfs*8|2|0.47|ENSG00000187726|chr11:73965012-73965012|A/-|frameshift_variant	DNAJB13|p.I159Lfs*8|2|0.47|ENSG00000187726|chr11:73965012-73965012|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	554.9951171875	2	554.305864	1106.59717	0.3834	0.00021252	0.22488	0.00012465	0.60828	0.00033717	554.3057758894031	55.746	0.1562	55.561	55.483	55.639	-0.18565					6	2	3	0	0	0	0.25347	1	21487	21487		6.2058	0	1	21617000			35476	710	22578	22699	34154	34154					0.04813994786195508
VERDMLSPL	9	Unmodified	_VERDMLSPL_					0	0	0			REV__ENST00000549412.5_2_12:49906680-49920035:+|nuORF	REV__ENST00000549412.5_2_12:49906680-49920035:+|nuORF	MSMS	HCT116MG_D190212_S4	4	530.2810668945312	2	530.278792	1058.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.403	1	39.022	38.522	39.522	-0.38055								0	0	0	0.768	1	14476	14476		7.9102	0	1		+		35477	16419	22579	22700	34155	34155					0.016100793629675536
VERHSDLPP	9	Unmodified	_VERHSDLPP_					0	0	0		ENST00000569969.5_2_16:28986191-28992937:+|nuORF;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENSG00000169682|ENST00000311008|SPNS1	ENST00000569969.5_2_16:28986191-28992937:+|nuORF	ENST00000569969.5_2_16:28986191-28992937:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	525.2482299804688	2	525.272355	1048.53016	0.36235	0.00019033	-0.38725	-0.00020341	-0.024897	-1.3078E-05	525.2719741730455	19.394	0.62383	19.207	18.869	19.493	-0.18674					19	11	3	0	0	0	0.15971	1	6670	6670		28.487	0	1	3045700			35478	5086	22580	22701	34156	34156					0.00783384295095857
VERHVKRR	8	Unmodified	_VERHVKRR_					0	0	0			REV__nc|nan|Q5JPI3-2|C3orf38	REV__nc|nan|Q5JPI3-2|C3orf38	MSMS	HCT116MG_D190212_S4	4	540.631103515625	2	540.330873	1078.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.155	1	52.82	52.32	53.32	-0.33473								0	0	0	0.8837	1	19837	19837		2.5775	0.27475	1		+		35479	13623	22581	22702	34157	34157					0.1110158702535955
VERIIQRLQRT	11	Unmodified	_VERIIQRLQRT_					0	0	0		ENSG00000172724|ENST00000311925|CCL19	ENSG00000172724|ENST00000311925|CCL19	ENSG00000172724|ENST00000311925|CCL19	MSMS	HCT116MG_D190212_S2	2	706.5219116210938	2	706.428242	1410.84193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.799	1	38.714	38.214	39.214	-0.084618								0	0	0	0.94012	1	14583	14583		11.495	3.8858	1				35480	5256	22582	22703	34158	34158					0.1529429331983465
VERKTSKKRTK	11	Unmodified	_VERKTSKKRTK_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MULTI-MSMS	HCT116MG_D190212_S1	1	454.283935546875	3	454.284287	1359.83103	-0.10448	-4.7465E-05	-0.45866	-0.00020836	-0.56315	-0.00025583	454.2839986615407	50.551	0.97941	50.551	49.853	50.833	0					55	18	4	0	0	0	0.74191	2	19090	19090;19333		0.50596	0.50596	1	123330000			35481	1122	22583	22704	34159;34160	34159					0.1655089094554114
VERLKNKW	8	Unmodified	_VERLKNKW_					0	0	0			REV__ENST00000474067.5_1_7:17932997-17946875:-|nuORF	REV__ENST00000474067.5_1_7:17932997-17946875:-|nuORF	MSMS	HCT116MG_D190212_S4	4	358.2145690917969	3	358.213581	1071.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.593	1	60.327	59.827	60.827	-0.26582								0	0	0	0.8837	1	22835	22835		0.45834	0	1		+		35482	15895	22584	22705	34161	34161					0.08596844325438724
VERNLQFLRHR	11	Unmodified	_VERNLQFLRHR_					0	0	0			REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000115306|Q01082-3|SPTBN1	MSMS	HCT116MG_D190212_S1	1	734.4161987304688	2	734.418208	1466.82186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.873	1	50.873	50.373	51.373	0								0	0	0	0.9598	1	19422	19422		1.1933	0.12188	1		+		35483	11538	22585	22706	34162	34162					0.10712542379860679
VERPVKHLDKT	11	Unmodified	_VERPVKHLDKT_					0	0	0		nc|ENSG00000140527|Q6P2C0-2|WDR93;ENSG00000140527|ENST00000268130|WDR93	nc|ENSG00000140527|Q6P2C0-2|WDR93	nc|ENSG00000140527|Q6P2C0-2|WDR93	MSMS	HCT116MG_D190212_S1	1	661.38232421875	2	661.382968	1320.75138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.332	1	52.332	51.832	52.832	0								0	0	0	0.95343	1	20013	20013		4.5289	0	1				35484	3672	22586	22707	34163	34163					0.10383824271548292
VERRKEQRLPQ	11	Unmodified	_VERRKEQRLPQ_					0	0	0		MMP24|p.R580Q|1|0.18|ENSG00000125966|chr20:35274410-35274410|G/A|missense_variant	MMP24|p.R580Q|1|0.18|ENSG00000125966|chr20:35274410-35274410|G/A|missense_variant	MMP24|p.R580Q|1|0.18|ENSG00000125966|chr20:35274410-35274410|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	719.912841796875	2	719.915498	1437.81644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.795	1	36.795	36.295	37.295	0								0	0	0	0.95273	1	13727	13727		4.897	1.9018	1				35485	9336	22587	22708	34164	34164					0.11504818797425287
VERRRHRRRR	10	Unmodified	_VERRRHRRRR_					0	0	0		ENST00000419807.5_3_2:44395715-44396385:+|nuORF	ENST00000419807.5_3_2:44395715-44396385:+|nuORF	ENST00000419807.5_3_2:44395715-44396385:+|nuORF	MSMS	HCT116MG_D190212_S1	1	738.9512939453125	2	738.951407	1475.88826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.224	1	48.224	47.724	48.724	0								0	0	0	0.96836	1	18344	18344		1.4819	1.4819	1				35486	7774	22588	22709	34165	34165					0.16935215785156288
VERRRRRRRRR	11	Unmodified	_VERRRRRRRRR_					0	0	0			REV__ENST00000321143.8_1_X:11129465-11130266:+|nuORF	REV__ENST00000321143.8_1_X:11129465-11130266:+|nuORF	MSMS	HCT116MG_D190212_S3	3	826.524169921875	2	826.523062	1651.03157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.989	1	59.735	59.235	60.235	-0.2534								0	0	0	0.96208	1	22859	22859		0	0	1		+		35487	14885	22589	22710	34166	34166					0.2320964289622225
VERRSGPL	8	Unmodified	_VERRSGPL_					0	0	0			REV__ENST00000344450.9_1_6:292292-292409:+|nuORF	REV__ENST00000344450.9_1_6:292292-292409:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	457.26409912109375	2	457.264333	912.514114	0.2275	0.00010403	0.29207	0.00013355	0.51957	0.00023758	457.26427447448964	44.232	1.6115	44.154	43.607	45.219	-0.078369					44	30	2	0	0	0	0.84759	1	16761	16761		5.7604	0	1	15863000	+		35488	15002	22590	22711	34167	34167					0.05435722848869773
VERSAVPR	8	Unmodified	_VERSAVPR_					0	0	0			REV__ENST00000548760.2_1_12:98909279-98909996:-|nuORF	REV__ENST00000548760.2_1_12:98909279-98909996:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	457.26458740234375	2	457.264333	912.514114	0.2275	0.00010403	0.29207	0.00013355	0.51957	0.00023758	457.26427447448964	44.232	1.6115	44.154	43.607	45.219	-0.078369					44	30	2	0	0	0	0.76189	1	17016	17016		15.847	0	1	15863000	+		35489	16415	22591	22712	34168	34168					0.05435722848858404
VERSAVPR	8	Unmodified	_VERSAVPR_					0	0	0			REV__ENST00000548760.2_1_12:98909279-98909996:-|nuORF	REV__ENST00000548760.2_1_12:98909279-98909996:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	457.264333	912.514114	0.19255	8.8049E-05	0.062839	2.8734E-05	0.25539	0.00011678	457.2642994365361	44.652	0.71145	44.279	43.676	44.387	-0.37326	0.11719	-9.7844E-05	NaN	15.847	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9076700	+		35490	16415	22591	22712							0.05435722848858404
VERVFGQQS	9	Unmodified	_VERVFGQQS_					0	0	0		ENST00000346234.6_1_9:77748219-77748258:+|nuORF	ENST00000346234.6_1_9:77748219-77748258:+|nuORF	ENST00000346234.6_1_9:77748219-77748258:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2723388671875	2	525.272355	1048.53016	0.29089	0.00015279	-0.049221	-2.5854E-05	0.24167	0.00012694	525.2723688736899	20.228	0.46862	20.276	19.947	20.416	0.048107					17	8	3	0	0	0	0.1754	1	6952	6952		43.858	12.59	1	3563700			35491	7262	22592	22713	34169	34169					0.00783384295095857
VERVITIM	8	Unmodified	_VERVITIM_					0	0	0		ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18;ENST00000474626.5_1_6:33239896-33243984:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	ENST00000496813.5_1_6:33239896-33244045:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	480.7811584472656	2	480.78097	959.547388	0.31354	0.00015075	-0.94825	-0.0004559	-0.63471	-0.00030516	480.780830428062	45.01	0.88179	44.917	44.632	45.514	-0.092472					32	16	3	0	0	0	0.15501	1	17111	17111		82.529	23.85	1	51283000			35492	6505	22593	22714	34170	34170					0.06599588576534643
VESAARNPGAQ	11	Unmodified	_VESAARNPGAQ_					0	0	0		ENST00000503780.5_2_4:175204868-175205078:+|nuORF	ENST00000503780.5_2_4:175204868-175205078:+|nuORF	ENST00000503780.5_2_4:175204868-175205078:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	550.2786254882812	2	550.278169	1098.54179	0.4151	0.00022842	0.44612	0.00024549	0.86122	0.00047391	550.7800109300358	18.845	0.20847	18.845	18.714	18.923	0					6	3	2	0	0	0	0.68512	1	6517	6517		32.786	5.1569	1	4078300			35493	8437	22594	22715	34171	34171					-0.0035441868158159195
VESAKDEEEL	10	Unmodified	_VESAKDEEEL_					0	0	0			REV__DNTTIP2|p.A515V|1|0.11|ENSG00000067334|chr1:93876391-93876391|G/A|missense_variant	REV__DNTTIP2|p.A515V|1|0.11|ENSG00000067334|chr1:93876391-93876391|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	575.6993408203125	2	574.769508	1147.52446	0.6304	0.00036234	-0.053267	-3.0616E-05	0.57714	0.00033172	574.7701808327696	28.42	0.31725	28.42	28.164	28.482	0					6	5	2	0	0	0	0.83158	1	10295	10295		9.3831	1.473	1	2079000	+		35494	10398	22595	22716	34172	34172					-0.043398037978931825
VESCVQYTSCK	11	Unmodified	_VESCVQYTSCK_					0	0	0		PLXNA1|p.E522K|1|0.12|ENSG00000114554|chr3:127004656-127004656|G/A|missense_variant	PLXNA1|p.E522K|1|0.12|ENSG00000114554|chr3:127004656-127004656|G/A|missense_variant	PLXNA1|p.E522K|1|0.12|ENSG00000114554|chr3:127004656-127004656|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	416.1863098144531	3	416.186263	1245.53696	-0.11479	-4.7772E-05	0.021353	8.8868E-06	-0.093432	-3.8885E-05	416.1863466074251	18.78	0.15635	18.78	18.662	18.819	0					4	2	2	0	0	0	0.73696	1	6489	6489		6.6235	0.43161	1	2312900			35495	9757	22596	22717	34173	34173					-0.07598806930855062
VESELLHTY	9	Unmodified	_VESELLHTY_					0	0	0		SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant;ENSG00000188338|ENST00000614032|SLC38A3;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENSG00000134294|ENST00000256689|SLC38A2	SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant	SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	545.7745361328125	2	545.774396	1089.53424	0.69974	0.0003819	-0.13224	-7.2174E-05	0.5675	0.00030972	545.7742235368461	39.167	0.30993	39.089	38.916	39.226	-0.077839					13	5	3	0	0	0	0.010304	1	14741	14741		112.59	64.247	1	45477000			35496	5978	22597	22718	34174	34174					-0.006945710018499085
VESELLHTY	9	Unmodified	_VESELLHTY_					0	0	0		SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant;ENSG00000188338|ENST00000614032|SLC38A3;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENSG00000134294|ENST00000256689|SLC38A2	SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant	SLC38A3|p.I469Sfs*13|1|0.24|ENSG00000188338|chr3:50219971-50219971|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	545.7742919921875	2	545.774396	1089.53424	0.42557	0.00023226	-0.0051908	-2.833E-06	0.42038	0.00022943	545.7744169465284	39.432	0.21355	39.131	38.979	39.192	-0.30137					8	3	3	0	0	0	0.0046012	1	14641	14641		141.83	89.558	1	9681700			35497	5978	22597	22718	34175	34175					-0.006945710018499085
VESERAQS	8	Unmodified	_VESERAQS_					0	0	0		nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENSG00000163507|ENST00000295746|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	nc|ENSG00000163507|Q8TCG1-2|CIP2A	MULTI-MSMS	HCT116MG_D190212_S2	2	453.2198486328125	2	453.219788	904.425024	0.019253	8.7261E-06	0.25386	0.00011505	0.27311	0.00012378	453.219890452067	15.841	0.31323	15.507	15.376	15.689	-0.33451					8	5	2	0	0	0	0.60054	1	5314	5314		32.305	32.305	1	5795100			35498	4604	22598	22719	34176	34176					-0.031011569013230655
VESFVPHIC	9	Unmodified	_VESFVPHIC_					0	0	0		SYCP2|p.R154H|1|0.11|ENSG00000196074|chr20:59916538-59916538|C/T|missense_variant	SYCP2|p.R154H|1|0.11|ENSG00000196074|chr20:59916538-59916538|C/T|missense_variant	SYCP2|p.R154H|1|0.11|ENSG00000196074|chr20:59916538-59916538|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1030.5028076171875	1	1030.50263	1029.49535	0.39673	0.00040883	1.6656	0.0017164	2.0624	0.0021253	1030.5038839643491	55.385	0.25542	55.199	55.072	55.327	-0.18565					9	4	3	0	0	0	0.32162	1	21386	21386		28.487	6.7402	1	24116000			35499	18245	22599	22720	34177	34177					-0.018215748372085727
VESGDEKKVP	10	Unmodified	_VESGDEKKVP_					0	0	0			REV__ENST00000487558.1_1_2:225360464-225362517:-|nuORF	REV__ENST00000487558.1_1_2:225360464-225362517:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	544.2963256835938	2	544.285128	1086.5557	0.51982	0.00028293	-0.20177	-0.00010982	0.31805	0.00017311	544.2847858096491	40.944	0.25669	40.567	40.419	40.676	-0.37732					6	4	2	0	0	0	0.85662	1	15008	15008		7.2892	0	1	2544500	+		35500	10579	22600	22721	34178	34178					0.015888140268771167
VESGDLQKEIA	11	Unmodified	_VESGDLQKEIA_					0	0	0		nc|ENSG00000140525|Q9NVI1-4|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-4|FANCI	MULTI-MSMS	HCT116MG_D190212_S3	3	594.6181030273438	2	594.808968	1187.60338	0.51598	0.00030691	-0.17883	-0.00010637	0.33716	0.00020054	594.809354393144	31.909	0.20812	31.639	31.482	31.69	-0.27028					5	3	2	0	0	0	0.19174	1	11663	11663		76.416	42.194	1	3933500			35501	3671	22601	22722	34179	34179					0.017084682270706253
VESGDLQKEIA	11	Unmodified	_VESGDLQKEIA_					0	0	0		nc|ENSG00000140525|Q9NVI1-4|FANCI;nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-4|FANCI	MULTI-MATCH	HCT116MG_D190212_S4	4		2	594.808968	1187.60338	0.83622	0.00049739	-2.4189	-0.0014388	-1.5826	-0.00094137	595.3078657292639	32.019	0.25954	31.644	31.486	31.745	-0.37529	0.0026814	-0.0023565	NaN	76.416	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1843400			35502	3671	22601	22722							0.017084682270706253
VESLPRKYK	9	Unmodified	_VESLPRKYK_					0	0	0		UTRN|p.T268S|1|0.22|ENSG00000152818|chr6:144429688-144429688|A/T|missense_variant	UTRN|p.T268S|1|0.22|ENSG00000152818|chr6:144429688-144429688|A/T|missense_variant	UTRN|p.T268S|1|0.22|ENSG00000152818|chr6:144429688-144429688|A/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	560.3279418945312	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.068	1	43.068	42.568	43.568	0								0	0	0	0.74436	1	16261	16261		16.942	1.0951	1				35503	18690	22602	22723	34180	34180					0.09021693777026485
VESPLSVSF	9	Unmodified	_VESPLSVSF_					0	0	0		ENSG00000145916|ENST00000313386|RMND5B;nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000153561|ENST00000283632|RMND5A	ENSG00000145916|ENST00000313386|RMND5B	ENSG00000145916|ENST00000313386|RMND5B	MULTI-MSMS	HCT116MG_D190212_S2	2	964.4962158203125	1	964.498589	963.491313	0.61904	0.00059706	-3.3426	-0.0032239	-2.7235	-0.0026268	964.4965639647768	54.908	0.35838	54.72	54.509	54.867	-0.18797					9	6	2	0	0	0	0.23138	1	21158	21158		37.974	5.6685	1	18578000			35504	3933	22603	22724	34181	34181					0.008106589407248066
VESRPEPPS	9	Unmodified	_VESRPEPPS_					0	0	0			REV__ENSG00000183421|ENST00000332512|RIPK4	REV__ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	HCT116MG_D190212_S4	4	499.250732421875	2	499.251089	996.487624	0.42322	0.00021129	-0.82408	-0.00041142	-0.40086	-0.00020013	499.2504540014682	19.8	0.25025	19.606	19.486	19.736	-0.19367					6	4	2	0	0	0	0.26536	1	6764	6764		34.402	1.616	1	1745100	+		35505	13762	22604	22725	34182	34182					-0.010760108331396623
VESTLFQQ	8	Unmodified	_VESTLFQQ_					0	0	0		DOCK5|p.R870Q|1|0.2|ENSG00000147459|chr8:25342499-25342499|G/A|missense_variant	DOCK5|p.R870Q|1|0.2|ENSG00000147459|chr8:25342499-25342499|G/A|missense_variant	DOCK5|p.R870Q|1|0.2|ENSG00000147459|chr8:25342499-25342499|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	476.24237060546875	2	476.242732	950.470912	0.47938	0.0002283	-0.20928	-9.967E-05	0.2701	0.00012863	476.24245380787244	51.526	0.62481	51.176	50.681	51.306	-0.35028					18	11	2	0	0	0	0.76189	1	19144	19144		15.847	0	1	3319800			35506	724	22605	22726	34183	34183					-0.006305117190890996
VESTLFQQ	8	Unmodified	_VESTLFQQ_					0	0	0		DOCK5|p.R870Q|1|0.2|ENSG00000147459|chr8:25342499-25342499|G/A|missense_variant	DOCK5|p.R870Q|1|0.2|ENSG00000147459|chr8:25342499-25342499|G/A|missense_variant	DOCK5|p.R870Q|1|0.2|ENSG00000147459|chr8:25342499-25342499|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	476.242732	950.470912	0.18786	8.9466E-05	0.10708	5.0997E-05	0.29494	0.00014046	476.24283009547474	51.384	0.26263	51.072	50.91	51.172	-0.31166	-0.051819	0.00010475	NaN	15.847	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1272600			35507	724	22605	22726							-0.006305117190890996
VESYYYKH	8	Unmodified	_VESYYYKH_					0	0	0			REV__nc|ENSG00000125457|A9UHW6-2|MIF4GD	REV__nc|ENSG00000125457|A9UHW6-2|MIF4GD	MULTI-SECPEP	HCT116MG_D190212_S3	3	545.2330322265625	2	544.756007	1087.49746	0.29068	0.00015835	-0.47164	-0.00025693	-0.18096	-9.858E-05	544.7555408732736	40.023	0.22215	39.721	39.629	39.851	-0.30137					7	5	2	0	0	0	0.30262	1	14857	14857		19.439	0	1	7866300	+		35508	17117	22606	22727	34184	34184					-0.04278822827768636
VETACLPG	8	Unmodified	_VETACLPG_					0	0	0		ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5	ENSG00000204889|ENST00000377755|KRT40	ENSG00000204889|ENST00000377755|KRT40	MSMS	HCT116MG_D190212_S3	3	395.1947937011719	2	395.194196	788.37384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.77	1	18.84	18.34	19.34	0.069159								0	0	0	0.8837	1	6396	6396		5.7604	0	1			+	35509	580	22607	22728	34185	34185					-0.028811971997356522
VETDGFISY	9	Unmodified	_VETDGFISY_					0	0	0		ENST00000587232.1_1_19:30104746-30106284:+|nuORF;ENSG00000105171|ENST00000585603|POP4	ENST00000587232.1_1_19:30104746-30106284:+|nuORF	ENST00000587232.1_1_19:30104746-30106284:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1030.4735107421875	1	1030.47277	1029.46549	0.71601	0.00073782	0.36444	0.00037555	1.0804	0.0011134	1030.473159344228	47.743	0.2589	47.61	47.428	47.687	-0.13281					7	4	2	0	0	0	0.035914	1	18239	18239		81.613	24.142	1	15571000			35510	1983	22608	22729	34186	34186					-0.04806235301543893
VETEALKK	8	Unmodified	_VETEALKK_					0	0	0		ENSG00000187017|ENST00000645284|ESPN	ENSG00000187017|ENST00000645284|ESPN	ENSG00000187017|ENST00000645284|ESPN	MULTI-SECPEP	HCT116MG_D190212_S4	4	458.7679138183594	2	459.26875	916.522947	0.16607	7.6272E-05	-1.8403	-0.0008452	-1.6742	-0.00076893	459.26806598352726	45.157	0.66554	44.785	44.53	45.195	-0.37266					21	14	2	0	0	0	0.32676	1	16676	16676		2.0598	0	1	2356300			35511	5925	22609	22730	34187	34187					0.06134651694674176
VETEEARFH	9	Unmodified	_VETEEARFH_					0	0	0			REV__ENST00000361972.8_1_10:7214115-7217992:-|nuORF	REV__ENST00000361972.8_1_10:7214115-7217992:-|nuORF	MSMS	HCT116MG_D190212_S4	4	559.2673950195312	2	559.26727	1116.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.424	1	33.042	32.542	33.542	-0.38223								0	0	0	0.64498	1	12167	12167		21.747	1.293	1		+		35512	15102	22610	22731	34188	34188					-0.0336122343014722
VETIISSFDLY	11	Unmodified	_VETIISSFDLY_					0	0	0			REV__nc|ENSG00000170423|Q8N1N4-2|KRT78	REV__nc|ENSG00000170423|Q8N1N4-2|KRT78	MSMS	HCT116MG_D190212_S3	3	643.8268432617188	2	643.829369	1285.64418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.445	1	52.139	51.639	52.639	-0.30639								0	0	0	0.9387	1	19826	19826		12.241	3.4953	1		+	+	35513	10274	22611	22732	34189	34189					0.012788095466703453
VETKIKLLKFR	11	Unmodified	_VETKIKLLKFR_					0	0	0		ENST00000575880.1_1_17:4126224-4126446:+|nuORF	ENST00000575880.1_1_17:4126224-4126446:+|nuORF	ENST00000575880.1_1_17:4126224-4126446:+|nuORF	MSMS	HCT116MG_D190212_S3	3	687.9461669921875	2	687.945205	1373.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.513	1	46.2	45.7	46.7	-0.31237								0	0	0	0.96149	1	17442	17442		0.30703	0	1				35514	8921	22612	22733	34190	34190					0.2038732175885798
VETKTGIIFGE	11	Unmodified	_VETKTGIIFGE_					0	0	0		tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	tr|U7STN1|U7STN1_FUSNU23SrRNA(-C5)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01407PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	597.3241577148438	2	597.324254	1192.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.759	1	24.49	23.99	24.99	-0.26881								0	0	0	0.93717	1	8740	8740		13.042	0	1				35515	18449	22613	22734	34191	34191					0.04534246612092829
VETLCICWFS	10	Unmodified	_VETLCICWFS_					0	0	0		ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	MULTI-MSMS	HCT116MG_D190212_S1	1	602.0655517578125	2	600.775028	1199.5355	0.59055	0.00035479	-0.18874	-0.00011339	0.40181	0.0002414	600.7746175048167	46.674	0.25946	46.674	46.543	46.803	0					12	4	4	0	0	0	0.82332	1	17666	17666		10.074	3.3508	1	17402000			35516	1956	22614	22735	34192	34192					-0.05628396228962629
VETLRPHVV	9	Unmodified	_VETLRPHVV_					0	0	0		nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	nc|ENSG00000072518|Q7KZI7-13|MARK2	MSMS	HCT116MG_D190212_S2	2	525.308837890625	2	525.308741	1048.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.99	1	28.674	28.174	29.174	-0.31613								0	0	0	0.76739	1	10600	10600		10.074	0.72649	1				35517	1272	22615	22736	34193	34193					0.08057138088520333
VETSVTYY	8	Unmodified	_VETSVTYY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	961.4513549804688	1	961.451305	960.444028	0.65009	0.00062503	-0.022047	-2.1197E-05	0.62805	0.00060384	961.4510033725707	36.48	0.36649	36.48	36.312	36.679	0					13	6	3	0	0	0	0.19622	1	13595	13595		74.396	24.727	1	23293000			35518	1867	22616	22737	34194	34194					-0.037776203302883005
VETSVTYY	8	Unmodified	_VETSVTYY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	961.4523315429688	1	961.451305	960.444028	0.72876	0.00070067	0.019643	1.8885E-05	0.7484	0.00071955	961.45133448082	36.542	0.41413	36.427	36.239	36.653	-0.11478					16	7	3	0	0	0	0.23352	1	13669	13669		67.035	17.366	1	101720000			35519	1867	22616	22737	34195	34195					-0.037776203302883005
VETSVTYY	8	Unmodified	_VETSVTYY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	961.451904296875	1	961.451305	960.444028	0.59583	0.00057286	0.33612	0.00032317	0.93195	0.00089603	961.4514007188789	36.749	0.46807	36.448	36.249	36.717	-0.30113					16	8	3	0	0	0	0.23352	1	13604	13604		67.035	17.366	1	17611000			35520	1867	22616	22737	34196	34196					-0.037776203302883005
VETSVTYY	8	Unmodified	_VETSVTYY_					0	0	0		ENST00000514123.5_1_16:69458586-69482095:+|nuORF;ENSG00000103018|ENST00000307892|CYB5B	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	ENST00000514123.5_1_16:69458586-69482095:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	962.4517211914062	1	961.451305	960.444028	0.56617	0.00054435	0.38168	0.00036696	0.94785	0.00091131	961.4525773011362	36.826	0.20755	36.441	36.331	36.539	-0.38486					6	3	2	0	0	0	0.66848	1	13511	13511		26.341	6.9023	1	2414900			35521	1867	22616	22737	34197	34197					-0.037776203302883005
VETVLDDNY	9	Unmodified	_VETVLDDNY_					0	0	0		tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	tr|U7SXB4|U7SXB4_FUSNUTransketolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00935PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	534.2481079101562	2	534.248212	1066.48187	0.5421	0.00028961	-0.35728	-0.00019088	0.18481	9.8737E-05	534.2478308672258	42.666	0.31264	42.362	42.144	42.457	-0.30352					8	5	2	0	0	0	0.30117	1	15911	15911		30.637	0	1	4325600			35522	18509	22617	22738	34198	34198					-0.04871154135480538
VEVARVLLDH	10	Unmodified	_VEVARVLLDH_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	HCT116MG_D190212_S4	4	384.2226867675781	3	384.224146	1149.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.909	1	38.527	38.027	39.027	-0.38163								0	0	0	0.95511	1	14277	14277		3.5871	0	1				35523	3147	22618	22739	34199	34199					0.08176792288713841
VEVKLDPL	8	Unmodified	_VEVKLDPL_					0	0	0			REV__ENST00000359321.1_1_7:152357836-152373217:-|nuORF	REV__ENST00000359321.1_1_7:152357836-152373217:-|nuORF	MSMS	HCT116MG_D190212_S3	3	456.7727355957031	2	456.773668	911.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.491	1	47.176	46.676	47.676	-0.31525								0	0	0	0.8837	1	17836	17836		8.5933	0	1		+		35524	15073	22619	22740	34200	34200					0.07347839700048553
VEVMPVFP	8	Unmodified	_VEVMPVFP_					0	0	0		ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1	ENSG00000006712|ENST00000221265|PAF1	ENSG00000006712|ENST00000221265|PAF1	MSMS	HCT116MG_D190212_S4	4	459.24365234375	2	459.243689	916.472826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.035	1	30.671	30.171	31.171	-0.36416								0	0	0	0.8837	1	11247	11247		9.3474	0	1				35525	835	22620	22741	34201	34201					0.0112482576516868
VEVSGILL	8	Unmodified	_VEVSGILL_					0	0	0			REV__ENSG00000117791|ENST00000366913|MTARC2	REV__ENSG00000117791|ENST00000366913|MTARC2	MSMS	HCT116MG_D190212_S4	4	415.26287841796875	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.33	1	46.959	46.459	47.459	-0.37038								0	0	0	0.8837	1	17504	17504		9.3474	0	1		+		35526	11624	22621	22742	34202	34202					0.07456168154294573
VEVSKPWKI	9	Unmodified	_VEVSKPWKI_					0	0	0			REV__nc|ENSG00000132153|Q7L2E3-2|DHX30	REV__nc|ENSG00000132153|Q7L2E3-2|DHX30	MSMS	HCT116MG_D190212_S2	2	543.3214721679688	2	543.321317	1084.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.921	1	56.742	56.242	57.242	-0.17904								0	0	0	0.76603	1	21969	21969		14.838	1.7958	1		+		35527	17130	22622	22743	34203	34203					0.08915192891095103
VEVTHVEP	8	Unmodified	_VEVTHVEP_					0	0	0		ENST00000467302.5_1_1:109236213-109238974:+|nuORF	ENST00000467302.5_1_1:109236213-109238974:+|nuORF	ENST00000467302.5_1_1:109236213-109238974:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	455.23895263671875	2	455.23745	908.460347	0.14635	6.6625E-05	0.87683	0.00039917	1.0232	0.00046579	455.23790019260247	32.095	0.62287	31.72	31.278	31.901	-0.37529					18	11	2	0	0	0	0.60268	1	11636	11636		32.117	0	1	5833200			35528	8115	22623	22744	34204	34204					0.002455056264693667
VEWLDEQQQK	10	Unmodified	_VEWLDEQQQK_					0	0	0			REV__MAP3K12|p.S536Lfs*35|1|0.36|ENSG00000139625|chr12:53483098-53483099|-/G|frameshift_variant	REV__MAP3K12|p.S536Lfs*35|1|0.36|ENSG00000139625|chr12:53483098-53483099|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	434.8824768066406	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7134	1	8.7134	8.2134	9.2134	0								0	0	0	0.96937	1	2628	2628		0.13989	0	1		+		35529	12266	22624	22745	34205	34205					-0.01356727024403881
VEWSTRTESA	10	Unmodified	_VEWSTRTESA_					0	0	0		ENST00000411500.5_1_6:32520814-32525810:-|nuORF	ENST00000411500.5_1_6:32520814-32525810:-|nuORF	ENST00000411500.5_1_6:32520814-32525810:-|nuORF	MSMS	HCT116MG_D190212_S3	3	583.2783813476562	2	583.277835	1164.54112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.419	1	35.12	34.62	35.62	-0.29922								0	0	0	0.80906	1	13072	13072		27.629	1.3607	1				35530	7734	22625	22746	34206	34206					-0.03457258121261475
VEWVKLYHA	9	Unmodified	_VEWVKLYHA_					0	0	0			REV__DCAF12L1|p.R58W|1|0.14|ENSG00000198889|chrX:126552437-126552437|G/A|missense_variant	REV__DCAF12L1|p.R58W|1|0.14|ENSG00000198889|chrX:126552437-126552437|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	572.7750854492188	2	572.811116	1143.60768	0.38064	0.00021804	-0.4082	-0.00023382	-0.027551	-1.5782E-05	572.811634141249	32.702	0.26028	32.702	32.482	32.742	0					6	4	2	0	0	0	0.24195	1	12062	12062		13.906	0.86358	1	10622000	+		35531	10331	22626	22747	34207	34207					0.041620222312758415
VEYESHRAA	9	Unmodified	_VEYESHRAA_					0	0	0		RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant;A1CF|p.V393Ffs*3|1|0.04|ENSG00000148584|chr10:50814028-50814029|-/TAAAA|frameshift_variant;A1CF|p.V393Cfs*32|1|0.04|ENSG00000148584|chr10:50814027-50814028|-/A|frameshift_variant;RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant;nc|ENSG00000151962|Q8TBY0-2|RBM46;nc|ENSG00000151962|Q8TBY0-3|RBM46;nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000151962|ENST00000281722|RBM46;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF	RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant	RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	531.2537231445312	2	531.254163	1060.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.421	1	16.421	15.921	16.921	0								0	0	0	0.76592	1	5525	5525		15.248	3.6082	1				35532	0	22627	22748	34208	34208					-0.034054926016324316
VEYESHRAA	9	Unmodified	_VEYESHRAA_					0	0	0		RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant;A1CF|p.V393Ffs*3|1|0.04|ENSG00000148584|chr10:50814028-50814029|-/TAAAA|frameshift_variant;A1CF|p.V393Cfs*32|1|0.04|ENSG00000148584|chr10:50814027-50814028|-/A|frameshift_variant;RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant;nc|ENSG00000151962|Q8TBY0-2|RBM46;nc|ENSG00000151962|Q8TBY0-3|RBM46;nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000151962|ENST00000281722|RBM46;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF	RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant	RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	531.25439453125	2	531.254163	1060.49377	0.45888	0.00024378	-0.10223	-5.4311E-05	0.35665	0.00018947	531.2541351956951	16.819	0.31208	16.477	16.308	16.62	-0.34183					8	5	2	0	0	0	0.20983	1	5701	5701		40.239	24.09	1	8363900			35533	0	22627	22748	34209	34209					-0.034054926016324316
VEYESHRAA	9	Unmodified	_VEYESHRAA_					0	0	0		RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant;A1CF|p.V393Ffs*3|1|0.04|ENSG00000148584|chr10:50814028-50814029|-/TAAAA|frameshift_variant;A1CF|p.V393Cfs*32|1|0.04|ENSG00000148584|chr10:50814027-50814028|-/A|frameshift_variant;RBM47|p.G400Dfs*45|1|0.41|ENSG00000163694|chr4:40436572-40436572|C/-|frameshift_variant;nc|ENSG00000151962|Q8TBY0-2|RBM46;nc|ENSG00000151962|Q8TBY0-3|RBM46;nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000163694|A0AV96-2|RBM47;ENSG00000151962|ENST00000281722|RBM46;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF	RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant	RBM46|p.T343Lfs*2|1|0.28|ENSG00000151962|chr4:154799185-154799185|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	531.254163	1060.49377	0.26538	0.00014098	0.11571	6.1471E-05	0.38109	0.00020245	531.2540779561865	16.353	0.15602	16.353	16.265	16.421	0	-0.061696	0.00011383	NaN	40.239	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1765900			35534	0	22627	22748							-0.034054926016324316
VEYLRNNFRPQ	11	Unmodified	_VEYLRNNFRPQ_					0	0	0		nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.E1273*|1|0.29|ENSG00000144724|chr3:62281605-62281606|-/TGAACTGT|frameshift_variant;PTPRG|p.Q1315Sfs*12|1|0.24|ENSG00000144724|chr3:62282754-62282754|T/-|frameshift_variant;PTPRG|p.A885Efs*11|1|0.09|ENSG00000144724|chr3:62262891-62262892|-/AAACAAAGGAA|frameshift_variant	nc|ENSG00000144724|P23470-2|PTPRG	nc|ENSG00000144724|P23470-2|PTPRG	MSMS	HCT116MG_D190212_S1	1	718.3751220703125	2	718.375675	1434.7368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.045	1	41.045	40.545	41.545	0								0	0	0	0.95196	1	15445	15445		5.2969	0.39987	1				35535	3879	22628	22749	34210	34210					0.03681752123407023
VFAEGSSSEE	10	Unmodified	_VFAEGSSSEE_					0	0	0		JRK|p.A390V|1|0.15|ENSG00000234616|chr8:142664890-142664890|G/A|missense_variant	JRK|p.A390V|1|0.15|ENSG00000234616|chr8:142664890-142664890|G/A|missense_variant	JRK|p.A390V|1|0.15|ENSG00000234616|chr8:142664890-142664890|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	521.2236328125	2	521.222194	1040.42983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.248	1	47.126	46.626	47.626	-0.12175								0	0	0	0.95179	1	18018	18018		4.3292	1.0479	1				35536	9252	22629	22750	34211	34211					-0.08876317549220403
VFASCNACTY	10	Unmodified	_VFASCNACTY_					0	0	0			REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant	REV__AKAP13|p.T2400Nfs*3|1|0.33|ENSG00000170776|chr15:85730617-85730618|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	360.0448303222656	3	360.14926	1077.42595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.575	1	12.637	12.137	13.137	0.06246								0	0	0	0.96911	1	3932	3932		0.15932	0	1		+		35537	9903	22630	22751	34212	34212					-0.10966401848304486
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S1	1	403.17950439453125	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5374	1	4.5374	4.0374	5.0374	0								0	0	0	0.8837	1	1362	1362		0.69038	0	1				35538	9451	22631	22752	34213	34213					0.03934148042867491
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S1	1	403.23223876953125	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.5883	1	4.5883	4.0883	5.0883	0								0	0	0	0.8837	1	1376	1376		0.69038	0	1				35539	9451	22631	22752	34214	34214					0.03934148042867491
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S2	2	403.23248291015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8083	1	1.795	1.295	2.295	-0.013221								0	0	0	0.8837	1	589	589		0.69038	0	1				35540	9451	22631	22752	34215	34215					0.03934148042867491
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S3	3	403.23260498046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2491	1	7.263	6.763	7.763	0.013901								0	0	0	0.8837	1	2191	2191		0.69038	0	1				35541	9451	22631	22752	34216	34216					0.03934148042867491
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S3	3	403.23248291015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8392	1	8.8598	8.3598	9.3598	0.020599								0	0	0	0.8837	1	2670	2670		0.69038	0	1				35542	9451	22631	22752	34217	34217					0.03934148042867491
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S3	3	403.2326354980469	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9229	1	9.9555	9.4555	10.455	0.032559								0	0	0	0.8837	1	3002	3002		0.69038	0	1				35543	9451	22631	22752	34218	34218					0.03934148042867491
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S3	3	403.23248291015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.22	1	64.014	63.514	64.514	-0.20569								0	0	0	0.8837	1	24447	24447		0.69038	0	1				35544	9451	22631	22752	34219	34219					0.03934148042867491
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S4	4	403.23248291015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8406	1	1.5761	1.0761	2.0761	-0.26456								0	0	0	0.8837	1	568	568		0.69038	0	1				35545	9451	22631	22752	34220	34220					0.03934148042867491
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S4	4	403.2322082519531	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5571	1	3.2926	2.7926	3.7926	-0.26456								0	0	0	0.8837	1	1084	1084		0.69038	0	1				35546	9451	22631	22752	34221	34221					0.03934148042867491
VFAVQGGK	8	Unmodified	_VFAVQGGK_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S4	4	403.23260498046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6621	1	8.4413	7.9413	8.9413	-0.22071								0	0	0	0.8837	1	2645	2645		0.69038	0	1				35547	9451	22631	22752	34222	34222					0.03934148042867491
VFCCCPCCYCC	11	Unmodified	_VFCCCPCCYCC_					0	0	0		ENST00000346964.6_2_3:196770181-196770280:-|nuORF	ENST00000346964.6_2_3:196770181-196770280:-|nuORF	ENST00000346964.6_2_3:196770181-196770280:-|nuORF	MSMS	HCT116MG_D190212_S2	2	623.66552734375	2	623.671165	1245.32778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.974	1	28.658	28.158	29.158	-0.31613								0	0	0	0.96208	1	10593	10593		0	0	1				35548	7264	22632	22753	34223	34223					-0.2850745234763963
VFDECHLAI	9	Unmodified	_VFDECHLAI_					0	0	0		DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant;DICER1|p.K1486Nfs*4|1|0.23|ENSG00000100697|chr14:95096462-95096462|T/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;ENST00000529206.1_1_14:95595738-95599795:-|nuORF	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	DICER1|p.S1473Ffs*4|1|0.2|ENSG00000100697|chr14:95096502-95096503|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	523.2516479492188	2	523.75241	1045.49027	0.6543	0.00034269	-0.45803	-0.0002399	0.19627	0.0001028	523.7522000094749	37.327	0.30107	37.327	37.146	37.447	0					7	5	2	0	0	0	0.26096	1	13947	13947		0.6015	0	1	25501000			35549	674	22633	22754	34224	34224					-0.030658786998628784
VFFFVPIK	8	Unmodified	_VFFFVPIK_					0	0	0			REV__COL9A1|p.P396Qfs*33|1|0.39|ENSG00000112280|chr6:70270324-70270324|G/-|frameshift_variant	REV__COL9A1|p.P396Qfs*33|1|0.39|ENSG00000112280|chr6:70270324-70270324|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	498.8003845214844	2	498.799489	995.584425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.328	1	10.328	9.8278	10.828	0								0	0	0	0.8837	1	3162	3162		0.69038	0	1		+		35550	10248	22634	22755	34225	34225					0.0864562818462673
VFFGGVKRIAS	11	Unmodified	_VFFGGVKRIAS_					0	0	0		tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	tr|U7SMT7|U7SMT7_FUSNUAGCSfamilyalanineorglycine:cationsymporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01817PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	394.2336730957031	3	394.232752	1179.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.639	1	54.316	53.816	54.816	-0.32349								0	0	0	0.95581	1	20436	20436		1.3296	0.25818	1				35551	18353	22635	22756	34226	34226					0.09377686531001928
VFHFFRLLFL	10	Unmodified	_VFHFFRLLFL_					0	0	0			REV__ENST00000440048.1_1_6:31762999-31763047:-|nuORF	REV__ENST00000440048.1_1_6:31762999-31763047:-|nuORF	MSMS	HCT116MG_D190212_S1	1	447.0997009277344	3	446.928893	1337.76485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6313	1	1.6313	1.1313	2.1313	0								0	0	0	0.97116	1	487	487		0	0	1		+		35552	15640	22636	22757	34227	34227					0.10947726841459371
VFHIGLLP	8	Unmodified	_VFHIGLLP_					0	0	0			REV__nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3	REV__nc|ENSG00000211787|A0A0A6YYJ7|TRAV8-3	MSMS	HCT116MG_D190212_S4	4	448.2478942871094	2	448.273638	894.532724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.379	1	26.078	25.578	26.578	-0.30087								0	0	0	0.8837	1	9394	9394		2.8892	0	1		+		35553	17281	22637	22758	34228	34228					0.08123884490703404
VFIFLILLN	9	Unmodified	_VFIFLILLN_					0	0	0		ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;ABCC4|p.T775Rfs*21|1|0.09|ENSG00000125257|chr13:95161322-95161323|-/AGTATGTCTT|frameshift_variant;nc|ENSG00000125257|O15439-3|ABCC4;ABCC4|p.L883Wfs*7|2|0.22|ENSG00000125257|chr13:95083178-95083178|A/-|frameshift_variant	ENSG00000125257|ENST00000645237|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	MSMS	HCT116MG_D190212_S4	4	546.3486938476562	2	546.346803	1090.67905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.019	1	44.645	44.145	45.145	-0.37326								0	0	0	0.76781	1	16592	16592		8.5933	3.8373	1				35554	2876	22638	22759	34229	34229					0.13734141935947264
VFIILLAFL	9	Unmodified	_VFIILLAFL_					0	0	0			REV__ENST00000375482.7_1_9:95709817-95737526:+|nuORF	REV__ENST00000375482.7_1_9:95709817-95737526:+|nuORF	MSMS	HCT116MG_D190212_S1	1	350.25323486328125	3	350.23169	1047.67324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.314	1	58.314	57.814	58.814	0								0	0	0	0.76991	1	22460	22460		1.1933	0	1		+		35555	15215	22639	22760	34230	34230					0.15131043424275958
VFIRRREAPPL	11	Unmodified	_VFIRRREAPPL_					0	0	0			REV__ENSG00000283755|ENST00000640559|CPHXL	REV__ENSG00000283755|ENST00000640559|CPHXL	MSMS	HCT116MG_D190212_S1	1	677.4075317382812	2	677.409321	1352.80409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.886	1	47.886	47.386	48.386	0								0	0	0	0.95521	1	18206	18206		3.5965	0.8613	1		+		35556	14480	22640	22761	34231	34231					0.14179827125030897
VFIRVKRTKIH	11	Unmodified	_VFIRVKRTKIH_					0	0	0			REV__ENSG00000164258|ENST00000296684|NDUFS4	REV__ENSG00000164258|ENST00000296684|NDUFS4	MSMS	HCT116MG_D190212_S3	3	698.94775390625	2	698.948613	1395.88267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.301	1	44.991	44.491	45.491	-0.31004								0	0	0	0.9598	1	16957	16957		1.1933	0	1		+		35557	12993	22641	22762	34232	34232					0.2005667943010394
VFKERWFWRVR	11	Unmodified	_VFKERWFWRVR_					0	0	0		ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	MSMS	HCT116MG_D190212_S1	1	536.9688720703125	3	536.968522	1607.88374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.457	1	11.457	10.957	11.957	0								0	0	0	0.96208	1	3608	3608		0	0	1				35558	4323	22642	22763	34233	34233					0.10410893798984944
VFKIVKMI	8	Unmodified	_VFKIVKMI_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	HCT116MG_D190212_S2	2	489.20904541015625	2	489.314449	976.614345	0.22374	0.00010948	0.037935	1.8562E-05	0.26168	0.00012804	489.3143347680276	54.371	0.56491	54.181	53.687	54.252	-0.1894					11	10	2	0	0	0	0.33574	1	20787	20787		0	0	1	6502900			35559	997	22643	22764	34234	34234					0.1251024385829851
VFKIVKMI	8	Unmodified	_VFKIVKMI_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	489.314449	976.614345	0.07611	3.7241E-05	0.13683	6.6952E-05	0.21294	0.00010419	489.3143962034688	54.654	1.7195	54.33	53.619	55.338	-0.32349	0.074499	6.4959E-06	NaN	0	56	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3193500			35560	997	22643	22764							0.1251024385829851
VFKKRFRIRRM	11	Unmodified	_VFKKRFRIRRM_					0	0	0		ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	512.9854125976562	3	512.985518	1535.93473	0.39288	0.00020154	-0.025857	-1.3264E-05	0.36703	0.00018828	512.9854110569746	52.269	0.46409	52.269	52.021	52.485	0					13	8	2	0	0	0	0.74191	1	20007	20007		0.094841	0.094841	1	21606000			35561	8365	22644	22765	34235	34235					0.18819519572207355
VFKKRFRIRRM	11	Unmodified	_VFKKRFRIRRM_					0	0	0		ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.9854736328125	3	512.985518	1535.93473	0.23091	0.00011845	0.063353	3.2499E-05	0.29426	0.00015095	512.985476578379	54.986	2.6699	54.798	52.915	55.585	-0.18797					191	51	6	0	0	0	0.74191	1	21265	21265		0	0	1	1183600000			35562	8365	22644	22765	34236	34236					0.18819519572207355
VFKKRFRIRRM	11	Unmodified	_VFKKRFRIRRM_					0	0	0		ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	512.27001953125	3	512.985518	1535.93473	0.32797	0.00016824	0.38346	0.00019671	0.71143	0.00036496	512.9858106610602	57.282	0.72821	57.103	56.635	57.363	-0.17904					16	13	2	0	0	0	0.36631	1	22140	22140		0	0	1	5421500			35563	8365	22644	22765	34237	34237					0.18819519572207355
VFKKRFRIRRM	11	Unmodified	_VFKKRFRIRRM_					0	0	0		ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	512.9853515625	3	512.985518	1535.93473	0.18818	9.6534E-05	0.044467	2.2811E-05	0.23265	0.00011934	512.9854690807514	55.084	1.6712	54.792	53.517	55.188	-0.2918					78	31	4	0	0	0	0.74191	2	20559	20559;20839		0	0	1	23358000			35564	8365	22644	22765	34238;34239	34238					0.18819519572207355
VFKKRFRIRRM	11	Unmodified	_VFKKRFRIRRM_					0	0	0		ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	ENST00000493793.1_1_1:51887572-51887638:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	512.5946655273438	3	512.985518	1535.93473	0.28654	0.00014699	0.055424	2.8432E-05	0.34196	0.00017542	512.9853859452895	53.85	0.20797	53.521	53.353	53.561	-0.32923					6	3	2	0	0	0	0.36628	1	20053	20053		0.45452	0.37117	1	2076500			35565	8365	22644	22765	34240	34240					0.18819519572207355
VFKTKKKIS	9	Unmodified	_VFKTKKKIS_					0	0	0			REV__TRIP4|p.V143I|1|0.05|ENSG00000103671|chr15:64397627-64397627|G/A|missense_variant	REV__TRIP4|p.V143I|1|0.05|ENSG00000103671|chr15:64397627-64397627|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	360.238037109375	3	360.237615	1077.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.421	1	59.163	58.663	59.663	-0.25832								0	0	0	0.77019	1	22628	22628		0.23584	0	1		+		35566	18017	22645	22766	34241	34241					0.15527758679127146
VFLFAILIKK	10	Unmodified	_VFLFAILIKK_					0	0	0			REV__tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	REV__tr|U7T4Y1|U7T4Y1_FUSNUOutermembraneproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00235PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	595.8953857421875	2	596.396828	1190.7791	0.47888	0.00028561	0.76583	0.00045674	1.2447	0.00074235	596.3972542943656	58.641	0.20365	58.641	58.514	58.717	0					5	3	2	0	0	0	0.31198	1	22608	22608		0.45834	0.45834	1	12923000	+		35567	17974	22646	22767	34242	34242					0.1913437926973529
VFLFVWYYRVY	11	Unmodified	_VFLFVWYYRVY_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	HCT116MG_D190212_S1	1	777.9114990234375	2	777.91083	1553.80711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.956	1	40.956	40.456	41.456	0								0	0	0	0.96141	1	15409	15409		0.35063	0	1				35568	4754	22647	22768	34243	34243					0.052356574591613025
VFLGVGMIVP	10	Unmodified	_VFLGVGMIVP_					0	0	0			REV__ENSG00000253304|ENST00000521452|TMEM200B	REV__ENSG00000253304|ENST00000521452|TMEM200B	MSMS	HCT116MG_D190212_S2	2	516.301513671875	2	516.301539	1030.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.41	1	45.317	44.817	45.817	-0.092472								0	0	0	0.91507	1	17268	17268		12.532	3.1841	1		+		35569	14387	22648	22769	34244	34244					0.0744534961604586
VFLLIKIWVPI	11	Unmodified	_VFLLIKIWVPI_					0	0	0			REV__nc|ENSG00000120802|P42167-2|TMPO	REV__nc|ENSG00000120802|P42167-2|TMPO	MSMS	HCT116MG_D190212_S3	3	670.93603515625	2	670.93886	1339.86317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.395	1	47.08	46.58	47.58	-0.31525								0	0	0	0.95521	1	17798	17798		3.5965	2.1146	1		+		35570	11701	22649	22770	34245	34245					0.20682910366645046
VFLNRAVFK	9	Unmodified	_VFLNRAVFK_					0	0	0			REV__COL6A3|p.E1521K|1|0.14|ENSG00000163359|chr2:237368902-237368902|C/T|missense_variant	REV__COL6A3|p.E1521K|1|0.14|ENSG00000163359|chr2:237368902-237368902|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	547.3314819335938	2	547.329476	1092.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.819	1	48.819	48.319	49.319	0								0	0	0	0.76923	1	18587	18587		3.5965	1.2938	1		+		35571	10244	22650	22771	34246	34246					0.10178318847852097
VFLRNQLRLP	10	Unmodified	_VFLRNQLRLP_					0	0	0			REV__nc|ENSG00000188732|A4D161-2|FAM221A	REV__nc|ENSG00000188732|A4D161-2|FAM221A	MULTI-MSMS	HCT116MG_D190212_S2	2	419.2593688964844	3	419.259302	1254.75608	0.23606	9.8968E-05	0.030629	1.2842E-05	0.26668	0.00011181	419.25926241446285	44.802	0.41617	44.717	44.535	44.951	-0.084797					22	7	4	0	0	0	0.35357	1	17026	17026		32.898	13.754	1	176950000	+		35572	13967	22651	22772	34247	34247					0.13888753204969362
VFLRNQLRLP	10	Unmodified	_VFLRNQLRLP_					0	0	0			REV__nc|ENSG00000188732|A4D161-2|FAM221A	REV__nc|ENSG00000188732|A4D161-2|FAM221A	MULTI-MSMS	HCT116MG_D190212_S2	2	628.3854370117188	2	628.385314	1254.75608	0.7145	0.00044898	0.054324	3.4137E-05	0.76883	0.00048312	628.3852724544407	44.802	0.41617	44.717	44.535	44.951	-0.084797					18	7	3	0	0	0	0.48679	1	17027	17027		36.127	3.8215	1	169020000	+		35573	13967	22651	22772	34248	34248					0.13888753204969362
VFLRNQLRLP	10	Unmodified	_VFLRNQLRLP_					0	0	0			REV__nc|ENSG00000188732|A4D161-2|FAM221A	REV__nc|ENSG00000188732|A4D161-2|FAM221A	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	628.385314	1254.75608	0.6196	0.00038934	-0.13241	-8.3204E-05	0.48719	0.00030614	628.3851087935167	44.796	0.25949	44.796	44.621	44.88	0	0.039549	-0.00013926	NaN	36.127	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45095000	+		35574	13967	22651	22772							0.13888753204969362
VFLRNQLRLP	10	Unmodified	_VFLRNQLRLP_					0	0	0			REV__nc|ENSG00000188732|A4D161-2|FAM221A	REV__nc|ENSG00000188732|A4D161-2|FAM221A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	628.385314	1254.75608	0.7145	0.00044898	0.054324	3.4137E-05	0.76883	0.00048312	628.3852724544407	44.802	0.41617	44.717	44.535	44.951	-0.084797	-0.039549	9.542E-05	NaN	36.127	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169020000	+		35575	13967	22651	22772							0.13888753204969362
VFLRNQLRLP	10	Unmodified	_VFLRNQLRLP_					0	0	0			REV__nc|ENSG00000188732|A4D161-2|FAM221A	REV__nc|ENSG00000188732|A4D161-2|FAM221A	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	419.259302	1254.75608	0.23606	9.8968E-05	0.030629	1.2842E-05	0.26668	0.00011181	419.25926241446285	44.802	0.41617	44.717	44.535	44.951	-0.084797	-0.042587	3.7698E-05	NaN	32.898	22	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176950000	+		35576	13967	22651	22772							0.13888753204969362
VFLVLYKLAW	10	Unmodified	_VFLVLYKLAW_					0	0	0		ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	418.29730224609375	3	417.921515	1250.74272	0.063083	2.6364E-05	1.0629	0.00044419	1.1259	0.00047055	417.92194922161457	55.121	0.15271	55.121	55.044	55.197	0					4	2	2	0	0	0	0.89372	1	21151	21151		0.15932	0.15932	1	47163000			35577	8302	22652	22773	34249	34249					0.1273750237303375
VFMALLRR	8	Unmodified	_VFMALLRR_					0	0	0		ENST00000526474.1_1_11:67174309-67174885:+|nuORF;ENST00000529635.5_1_11:67174176-67177222:+|nuORF;TBC1D10C|p.A321Rfs*56|1|0.29|ENSG00000175463|chr11:67409093-67409094|-/C|frameshift_variant;TBC1D10C|p.A321Rfs*100|2|0.28|ENSG00000175463|chr11:67409094-67409094|C/-|frameshift_variant;ENSG00000175463|ENST00000542590|TBC1D10C	ENST00000526474.1_1_11:67174309-67174885:+|nuORF	ENST00000526474.1_1_11:67174309-67174885:+|nuORF	MSMS	HCT116MG_D190212_S1	1	503.30609130859375	2	503.304947	1004.59534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.361	1	51.361	50.861	51.861	0								0	0	0	0.8837	1	19621	19621		0.79363	0	1				35578	5381	22653	22774	34250	34250					0.09322707287242338
VFMREHLNYWY	11	Unmodified	_VFMREHLNYWY_					0	0	0		nc|ENSG00000172350|Q9H172-4|ABCG4;nc|ENSG00000172350|Q9H172-3|ABCG4;nc|ENSG00000172350|Q9H172-2|ABCG4;ENSG00000172350|ENST00000619701|ABCG4	nc|ENSG00000172350|Q9H172-4|ABCG4	nc|ENSG00000172350|Q9H172-4|ABCG4	MSMS	HCT116MG_D190212_S1	1	519.9154052734375	3	519.915095	1556.72345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.558	1	21.558	21.058	22.058	0								0	0	0	0.96111	1	7590	7590		0.50596	0	1				35579	5247	22654	22775	34251	34251					-0.03263821980135617
VFNRDSGA	8	Unmodified	_VFNRDSGA_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-5|ARHGEF28	MULTI-MSMS	HCT116MG_D190212_S2	2	433.2122802734375	2	433.211766	864.40898	-0.040171	-1.7403E-05	0.16247	7.0383E-05	0.1223	5.298E-05	433.2117340810843	19.946	0.57117	19.571	19.351	19.922	-0.37503					14	10	2	0	0	0	0.62424	1	6958	6958		30.225	4.8255	1	5344900	+		35580	14274	22655	22776	34252	34252					-0.02864818347563869
VFPGTKWGV	9	Unmodified	_VFPGTKWGV_					0	0	0		ENST00000418310.5_1_7:73536047-73536155:+|nuORF	ENST00000418310.5_1_7:73536047-73536155:+|nuORF	ENST00000418310.5_1_7:73536047-73536155:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	495.773193359375	2	495.774003	989.533452	0.48418	0.00024004	-0.4201	-0.00020828	0.064074	3.1766E-05	495.7736619939775	29.77	0.20686	29.469	29.34	29.547	-0.30095					5	3	2	0	0	0	0.21258	1	10935	10935		39.95	3.4435	1	17692000			35581	7768	22656	22777	34253	34253					0.038266791397632005
VFPGTKWGV	9	Unmodified	_VFPGTKWGV_					0	0	0		ENST00000418310.5_1_7:73536047-73536155:+|nuORF	ENST00000418310.5_1_7:73536047-73536155:+|nuORF	ENST00000418310.5_1_7:73536047-73536155:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	495.774003	989.533452	0.45315	0.00022466	-0.18744	-9.2926E-05	0.26571	0.00013173	495.7745469391529	29.763	0.15888	29.526	29.396	29.555	-0.23655	0.028485	0.00019934	NaN	39.95	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1610700			35582	7768	22656	22777							0.038266791397632005
VFPIMPPL	8	Unmodified	_VFPIMPPL_					0	0	0			REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	457.2645263671875	2	457.264425	912.514297	-0.0014054	-6.4266E-07	-0.0078448	-3.5872E-06	-0.0092502	-4.2298E-06	457.2643625930388	44.052	2.8608	44.052	42.538	45.399	0					83	54	3	0	0	0	0.8029	1	16733	16733		11.114	0	1	31301000	+		35583	15277	22657	22778	34254	34254					0.054540065244850666
VFPIMPPL	8	Unmodified	_VFPIMPPL_					0	0	0			REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	457.26422119140625	2	457.264425	912.514297	0.45313	0.0002072	-0.040385	-1.8467E-05	0.41275	0.00018873	457.264367561786	44.974	1.1112	44.665	44.351	45.462	-0.30927					31	23	2	0	0	0	0.8029	1	16834	16834		11.114	0	1	3950600	+		35584	15277	22657	22778	34255	34255					0.054540065244850666
VFPIMPPL	8	Unmodified	_VFPIMPPL_					0	0	0			REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	457.2644958496094	2	457.264425	912.514297	0.22053	0.00010084	-0.063217	-2.8907E-05	0.15731	7.1934E-05	457.26432278830026	45.263	1.1648	44.89	44.388	45.553	-0.37265					50	31	2	0	0	0	0.84415	1	16769	16769		6.3541	0	1	6903900	+		35585	15277	22657	22778	34256	34256					0.054540065244850666
VFPIMPPL	8	Unmodified	_VFPIMPPL_					0	0	0			REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	457.264425	912.514297	0.45313	0.0002072	-0.040385	-1.8467E-05	0.41275	0.00018873	457.264367561786	44.974	1.1112	44.665	44.351	45.462	-0.30927	-0.1127	1.1751E-05	NaN	11.114	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3950600	+		35586	15277	22657	22778							0.054540065244850666
VFPIMPPL	8	Unmodified	_VFPIMPPL_					0	0	0			REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	REV__ENST00000381072.5_1_10:3176693-3177972:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	457.264425	912.514297	0.22053	0.00010084	-0.063217	-2.8907E-05	0.15731	7.1934E-05	457.26432278830026	45.263	1.1648	44.89	44.388	45.553	-0.37265	0.1127	-9.1298E-06	NaN	11.114	50	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6903900	+		35587	15277	22657	22778							0.054540065244850666
VFQARIRMV	9	Unmodified	_VFQARIRMV_					0	0	0		ENST00000531236.1_1_11:71196518-71209628:+|nuORF	ENST00000531236.1_1_11:71196518-71209628:+|nuORF	ENST00000531236.1_1_11:71196518-71209628:+|nuORF	MSMS	HCT116MG_D190212_S1	1	560.327392578125	2	560.326411	1118.63827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.063	1	40.063	39.563	40.563	0								0	0	0	0.76902	1	15047	15047		4.3292	0.38484	1				35588	8619	22658	22779	34257	34257					0.08369477344672305
VFQVIDREAY	10	Unmodified	_VFQVIDREAY_					0	0	0			REV__ENST00000546603.5_1_12:39047686-39073432:-|nuORF	REV__ENST00000546603.5_1_12:39047686-39073432:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	620.3223266601562	2	620.322045	1238.62954	0.45427	0.00028179	0.54862	0.00034032	1.0029	0.00062212	620.3222777105923	55.283	0.20311	55.095	54.968	55.171	-0.18797					5	3	2	0	0	0	0.8224	1	21335	21335		10.151	0.6066	1	47293000	+		35589	12249	22659	22780	34258	34258					0.019767821892173743
VFRIFFHKIF	10	Unmodified	_VFRIFFHKIF_					0	0	0		ENSG00000168229|ENST00000306051|PTGDR	ENSG00000168229|ENST00000306051|PTGDR	ENSG00000168229|ENST00000306051|PTGDR	MULTI-MSMS	HCT116MG_D190212_S4	4	677.3959350585938	2	677.395151	1352.77575	0.74399	0.00050398	0.25339	0.00017165	0.99738	0.00067562	677.3952079098644	53.923	1.6661	53.594	52.624	54.291	-0.32923					81	31	3	0	0	0	0.88673	1	20406	20406		1.8442	1.8442	1	19342000			35590	4991	22660	22781	34259	34259					0.11347129215732821
VFRIFFHKIF	10	Unmodified	_VFRIFFHKIF_					0	0	0		ENSG00000168229|ENST00000306051|PTGDR	ENSG00000168229|ENST00000306051|PTGDR	ENSG00000168229|ENST00000306051|PTGDR	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	677.395151	1352.77575	0.92065	0.00062364	0.25651	0.00017376	1.1772	0.0007974	677.3953833014352	54.012	1.2008	53.713	52.777	53.978	-0.29946	0.059529	3.5193E-06	NaN	1.8442	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4355400			35591	4991	22660	22781							0.11347129215732821
VFRMFLVR	8	Unmodified	_VFRMFLVR_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MSMS	HCT116MG_D190212_S3	3	534.3125	2	534.312772	1066.61099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.821	1	37.519	37.019	38.019	-0.30137								0	0	0	0.8837	1	13995	13995		4.3292	0	1		+		35592	11200	22661	22782	34260	34260					0.08034993804312762
VFRRAWRK	8	Unmodified	_VFRRAWRK_					0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	MSMS	HCT116MG_D190212_S1	1	559.8358764648438	2	559.838334	1117.66212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.958	1	61.958	61.458	62.458	0								0	0	0	0.8837	1	23916	23916		2.5775	0	1				35593	6521	22662	22783	34261	34261					0.10799078893364822
VFRSISKS	8	Unmodified	_VFRSISKS_					0	0	0		ENST00000495880.1_1_3:52084162-52084369:-|nuORF	ENST00000495880.1_1_3:52084162-52084369:-|nuORF	ENST00000495880.1_1_3:52084162-52084369:-|nuORF	MSMS	HCT116MG_D190212_S3	3	462.14666748046875	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.083	1	57.814	57.314	58.314	-0.26932								0	0	0	0.8837	1	22087	22087		0.79363	0	1				35594	8386	22663	22784	34262	34262					0.059254911343941785
VFRYKYRRWRQ	11	Unmodified	_VFRYKYRRWRQ_					0	0	0			REV__nc|ENSG00000155542|Q8NE22-2|SETD9	REV__nc|ENSG00000155542|Q8NE22-2|SETD9	MSMS	HCT116MG_D190212_S4	4	829.460693359375	2	829.46295	1656.91135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.552	1	46.181	45.681	46.681	-0.37134								0	0	0	0.96208	1	17190	17190		0	0	1		+		35595	12704	22664	22785	34263	34263					0.1091679705923525
VFSEPRAVFY	10	Unmodified	_VFSEPRAVFY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MSMS	HCT116MG_D190212_S2	2	607.8143310546875	2	607.813856	1213.61316	0.7624	0.0004634	0.13213	8.0311E-05	0.89454	0.00054371	607.8137119674363	47.323	0.46523	47.202	47.026	47.491	-0.12175					17	8	3	0	0	0	0.027339	1	18065	18065		107.1	54.831	1	23473000			35596	1152	22665	22786	34264	34264					0.014897010231152308
VFVKGLIILL	10	Unmodified	_VFVKGLIILL_					0	0	0			REV__ENST00000300087.6_1_16:23678897-23679026:+|nuORF	REV__ENST00000300087.6_1_16:23678897-23679026:+|nuORF	MSMS	HCT116MG_D190212_S4	4	372.2591247558594	3	372.258127	1113.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.506	1	37.122	36.622	37.622	-0.3839								0	0	0	0.97116	1	13766	13766		0	0	1		+		35597	14776	22666	22787	34265	34265					0.20022690378436891
VFVKGLIILL	10	Unmodified	_VFVKGLIILL_					0	0	0			REV__ENST00000300087.6_1_16:23678897-23679026:+|nuORF	REV__ENST00000300087.6_1_16:23678897-23679026:+|nuORF	MSMS	HCT116MG_D190212_S4	4	372.25872802734375	3	372.258127	1113.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.777	1	38.395	37.895	38.895	-0.38163								0	0	0	0.97116	1	14224	14224		0	0	1		+		35598	14776	22666	22787	34266	34266					0.20022690378436891
VFVLPFPV	8	Unmodified	_VFVLPFPV_					0	0	0		ENST00000370490.1_1_X:144906531-144906621:+|nuORF	ENST00000370490.1_1_X:144906531-144906621:+|nuORF	ENST00000370490.1_1_X:144906531-144906621:+|nuORF	MSMS	HCT116MG_D190212_S2	2	459.2802429199219	2	459.278389	916.542226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.982	1	46.86	46.36	47.36	-0.12175								0	0	0	0.8837	1	17910	17910		6.3541	1.1234	1				35599	7426	22667	22788	34267	34267					0.08061652776245865
VFVLPFPV	8	Unmodified	_VFVLPFPV_					0	0	0		ENST00000370490.1_1_X:144906531-144906621:+|nuORF	ENST00000370490.1_1_X:144906531-144906621:+|nuORF	ENST00000370490.1_1_X:144906531-144906621:+|nuORF	MSMS	HCT116MG_D190212_S3	3	459.2803039550781	2	459.278389	916.542226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.358	1	59.097	58.597	59.597	-0.26062								0	0	0	0.8837	1	22602	22602		0.79363	0	1				35600	7426	22667	22788	34268	34268					0.08061652776245865
VFVMIVLP	8	Unmodified	_VFVMIVLP_					0	0	0			REV__ENSG00000169252|ENST00000305988|ADRB2	REV__ENSG00000169252|ENST00000305988|ADRB2	MSMS	HCT116MG_D190212_S4	4	459.2799072265625	2	459.280075	916.545597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.163	1	54.845	54.345	55.345	-0.31774								0	0	0	0.8837	1	20647	20647		0.79363	0	1		+		35601	13235	22668	22789	34269	34269					0.08398579558581787
VFVMIVLP	8	Unmodified	_VFVMIVLP_					0	0	0			REV__ENSG00000169252|ENST00000305988|ADRB2	REV__ENSG00000169252|ENST00000305988|ADRB2	MSMS	HCT116MG_D190212_S4	4	459.2796936035156	2	459.280075	916.545597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.423	1	56.117	55.617	56.617	-0.30626								0	0	0	0.8837	1	21151	21151		0.79363	0	1		+		35602	13235	22668	22789	34270	34270					0.08398579558581787
VFVSLSVLDI	10	Unmodified	_VFVSLSVLDI_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MSMS	HCT116MG_D190212_S1	1	546.5856323242188	2	546.320983	1090.62741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.478	1	49.478	48.978	49.978	0								0	0	0	0.91638	1	18854	18854		12.241	1.4167	1				35603	5944	22669	22790	34271	34271					0.08572353451381787
VGAAERFR	8	Unmodified	_VGAAERFR_					0	0	0		AKT1S1|p.F143Sfs*14|1|0.31|ENSG00000204673|chr19:49871843-49871843|G/-|frameshift_variant;ENSG00000204673|ENST00000344175|AKT1S1;nc|ENSG00000204673|Q96B36-3|AKT1S1	AKT1S1|p.F143Sfs*14|1|0.31|ENSG00000204673|chr19:49871843-49871843|G/-|frameshift_variant	AKT1S1|p.F143Sfs*14|1|0.31|ENSG00000204673|chr19:49871843-49871843|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	453.25152587890625	2	453.251226	904.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.255	1	40.953	40.453	41.453	-0.30185								0	0	0	0.8837	1	15341	15341		2.8892	0	1				35604	89	22670	22791	34272	34272					0.031834536773772015
VGAAERGP	8	Unmodified	_VGAAERGP_					0	0	0		ENST00000339852.4_1_19:39687849-39688705:+|nuORF	ENST00000339852.4_1_19:39687849-39688705:+|nuORF	ENST00000339852.4_1_19:39687849-39688705:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	756.4005126953125	1	756.399878	755.392602	0.85174	0.00064426	-0.78143	-0.00059108	0.07031	5.3182E-05	756.3991883691568	39.696	0.40908	39.619	39.428	39.837	-0.077839					10	7	2	0	0	0	0.6854	1	14948	14948		24.674	1.5255	1	39201000			35605	7209	22671	22792	34273	34273					0.0051210048633265615
VGAAERGP	8	Unmodified	_VGAAERGP_					0	0	0		ENST00000339852.4_1_19:39687849-39688705:+|nuORF	ENST00000339852.4_1_19:39687849-39688705:+|nuORF	ENST00000339852.4_1_19:39687849-39688705:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	756.4013061523438	1	756.399878	755.392602	0.37991	0.00028737	0.43081	0.00032587	0.81072	0.00061323	756.4001358271036	40.023	0.2397	39.721	39.611	39.851	-0.30137					8	6	2	0	0	0	0.6854	1	14850	14850		24.674	1.5255	1	10199000			35606	7209	22671	22792	34274	34274					0.0051210048633265615
VGAAHVIKR	9	Unmodified	_VGAAHVIKR_					0	0	0		nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000533509.1_1_11:128855854-128936700:-|nuORF;ARHGAP32|p.K338Sfs*13|1|0.07|ENSG00000134909|chr11:128998459-128998459|T/-|frameshift_variant;ARHGAP32|p.P491Hfs*10|1|0.28|ENSG00000134909|chr11:128986015-128986015|G/-|frameshift_variant;ARHGAP32|p.N520Ifs*2|1|0.33|ENSG00000134909|chr11:128981862-128981862|T/-|frameshift_variant	nc|ENSG00000134909|A7KAX9|ARHGAP32	nc|ENSG00000134909|A7KAX9|ARHGAP32	MULTI-MSMS	HCT116MG_D190212_S2	2	950.591796875	1	950.58941	949.582134	0.72053	0.00068493	0.59647	0.000567	1.317	0.0012519	950.5900978669495	60.787	0.25692	60.639	60.527	60.784	-0.14852					7	4	2	0	0	0	0.74607	1	23551	23551		2.0598	0	1	10584000			35607	3315	22672	22793	34275	34275					0.10532592499521343
VGAAPAAAAA	10	Unmodified	_VGAAPAAAAA_					0	0	0		ENST00000358022.4_1_9:25678012-25678297:-|nuORF	ENST00000358022.4_1_9:25678012-25678297:-|nuORF	ENST00000358022.4_1_9:25678012-25678297:-|nuORF	MSMS	HCT116MG_D190212_S3	3	385.2135314941406	2	385.213778	768.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.682	1	15.767	15.267	16.267	0.085423								0	0	0	0.83198	1	5149	5149		24.674	2.9272	1				35608	7316	22673	22794	34276	34276					0.01953271146123825
VGAARVKVV	9	Unmodified	_VGAARVKVV_					0	0	0			REV__ENSG00000162009|ENST00000689027|SSTR5	REV__ENSG00000162009|ENST00000689027|SSTR5	MULTI-MSMS	HCT116MG_D190212_S2	2	900.5962524414062	1	898.583262	897.575986	1.0591	0.0009517	2.2141	0.0019896	3.2733	0.0029413	898.5807680490976	60.357	2.0609	60.202	59.291	61.352	-0.15441					123	40	4	0	0	0	0.74258	1	23196	23196		2.3027	0	1	18408000	+		35609	12867	22674	22795	34277	34277					0.12310074267998061
VGAERLLHLP	10	Unmodified	_VGAERLLHLP_					0	0	0			REV__ENST00000580011.1_1_17:62082465-62082525:-|nuORF	REV__ENST00000580011.1_1_17:62082465-62082525:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	552.8301391601562	2	552.82984	1103.64513	0.41368	0.00022869	1.038	0.00057386	1.4517	0.00080255	552.8298742520218	39.331	0.2676	39.03	38.872	39.14	-0.30137					10	4	3	0	0	0	0.72678	1	14632	14632		18.146	3.3081	1	14776000	+		35610	16619	22675	22796	34278	34278					0.09745113496910562
VGAFGGLDSIL	11	Unmodified	_VGAFGGLDSIL_					0	0	0			REV__ENST00000542215.5_1_X:41193845-41203505:+|nuORF	REV__ENST00000542215.5_1_X:41193845-41203505:+|nuORF	MSMS	HCT116MG_D190212_S2	2	350.1949768066406	3	350.193963	1047.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.309	1	34.134	33.634	34.634	-0.17512								0	0	0	0.93552	1	12760	12760		10.899	2.9536	1		+		35611	16377	22676	22797	34279	34279					0.038183232404207956
VGAGAKQL	8	Unmodified	_VGAGAKQL_					0	0	0		ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	MSMS	HCT116MG_D190212_S4	4	372.2225646972656	2	372.224146	742.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.88	1	26.568	26.068	27.068	-0.3114								0	0	0	0.8837	1	9596	9596		2.8892	0	1				35612	3498	22677	22798	34280	34280					0.052218615258084355
VGAGAPVY	8	Unmodified	_VGAGAPVY_					0	0	0		nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000180573|ENST00000377791|H2AC6;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000276368|ENST00000333151|H2AC14	nc|ENSG00000246705|Q9BTM1-2|H2AJ	nc|ENSG00000246705|Q9BTM1-2|H2AJ	MSMS	HCT116MG_D190212_S1	1	367.19622802734375	2	367.197596	732.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.575	1	28.575	28.075	29.075	0								0	0	0	0.8837	1	10412	10412		6.3541	3.4649	1				35613	5603	22678	22799	34281	34281					0.0037448374314408284
VGAGHMGR	8	Unmodified	_VGAGHMGR_					0	0	0			REV__ENSG00000166111|ENST00000610966|SVOP	REV__ENSG00000166111|ENST00000610966|SVOP	MSMS	HCT116MG_D190212_S1	1	392.7482604980469	2	392.697772	783.380991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.85	1	47.85	47.35	48.35	0								0	0	0	0.8837	1	18192	18192		0.79363	0	1		+		35614	13088	22679	22800	34282	34282					-0.019364198086464057
VGAGKTFK	8	Unmodified	_VGAGKTFK_					0	0	0			REV__ENSG00000115129|ENST00000238721|TP53I3	REV__ENSG00000115129|ENST00000238721|TP53I3	MULTI-SECPEP	HCT116MG_D190212_S2	2	404.7317810058594	2	404.239796	806.465038	0.072784	2.9422E-05	-0.90666	-0.00036651	-0.83388	-0.00033709	404.2395427451048	24.333	0.20852	23.953	23.822	24.03	-0.38003					5	3	2	0	0	0	0.21511	1	8739	8739		49.669	28.798	1	4091200	+		35615	11528	22680	22801	34283	34283					0.05406434559904483
VGAGKVRIGWS	11	Unmodified	_VGAGKVRIGWS_					0	0	0			REV__ENST00000373578.6_1_20:36032386-36033025:+|nuORF	REV__ENST00000373578.6_1_20:36032386-36033025:+|nuORF	MSMS	HCT116MG_D190212_S3	3	377.2191467285156	3	377.220735	1128.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.646	1	10.686	10.186	11.186	0.039975								0	0	0	0.95954	1	3232	3232		1.3296	0.25818	1		+		35616	15192	22681	22802	34284	34284					0.08120229354108233
VGAGPARGP	9	Unmodified	_VGAGPARGP_					0	0	0		ENST00000369888.5_1_20:62588486-62588768:-|nuORF	ENST00000369888.5_1_20:62588486-62588768:-|nuORF	ENST00000369888.5_1_20:62588486-62588768:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	391.2200927734375	2	391.219395	780.424236	0.10148	3.9699E-05	0.80183	0.00031369	0.90331	0.00035339	391.2197840206951	19.353	0.31273	18.983	18.784	19.096	-0.3695					9	5	2	0	0	0	0.17018	1	6718	6718		44.407	3.9584	1	5811100			35617	7417	22682	22803	34285	34285					0.02524093240288039
VGAGPARGP	9	Unmodified	_VGAGPARGP_					0	0	0		ENST00000369888.5_1_20:62588486-62588768:-|nuORF	ENST00000369888.5_1_20:62588486-62588768:-|nuORF	ENST00000369888.5_1_20:62588486-62588768:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	391.2192687988281	2	391.219395	780.424236	-0.052351	-2.0481E-05	0.11493	4.4965E-05	0.062583	2.4484E-05	391.219388624588	18.531	0.36453	18.607	18.413	18.778	0.076334					13	6	3	0	0	0	0.050632	1	6299	6299		74.396	3.5318	1	5850500			35618	7417	22682	22803	34286	34286					0.02524093240288039
VGAGPARGP	9	Unmodified	_VGAGPARGP_					0	0	0		ENST00000369888.5_1_20:62588486-62588768:-|nuORF	ENST00000369888.5_1_20:62588486-62588768:-|nuORF	ENST00000369888.5_1_20:62588486-62588768:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	391.21954345703125	2	391.219395	780.424236	0.001812	7.089E-07	-0.096144	-3.7613E-05	-0.094332	-3.6905E-05	391.2193172800714	18.822	0.46784	18.641	18.407	18.875	-0.18052					13	8	2	0	0	0	0.050632	1	6327	6327		74.396	3.5318	1	5272100			35619	7417	22682	22803	34287	34287					0.02524093240288039
VGAGRLHHPH	10	Unmodified	_VGAGRLHHPH_					0	0	0		ENST00000327946.11_1_10:88123777-88126171:-|nuORF	ENST00000327946.11_1_10:88123777-88126171:-|nuORF	ENST00000327946.11_1_10:88123777-88126171:-|nuORF	MSMS	HCT116MG_D190212_S2	2	540.7941284179688	2	540.794124	1079.57369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.648	1	26.286	25.786	26.786	-0.36164								0	0	0	0.81484	1	9650	9650		26.884	0.86295	1				35620	7147	22683	22804	34288	34288					0.03709038582883295
VGAGSRPK	8	Unmodified	_VGAGSRPK_					0	0	0		nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2;nc|ENSG00000164877|Q8IY33-4|MICALL2;ENST00000472100.5_1_7:1481822-1498962:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2	nc|ENSG00000164877|Q8IY33-5|MICALL2	nc|ENSG00000164877|Q8IY33-5|MICALL2	MSMS	HCT116MG_D190212_S4	4	386.228515625	2	386.22722	770.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.796	1	32.417	31.917	32.917	-0.37924								0	0	0	0.8837	1	11959	11959		5.7604	1.0044	1				35621	4727	22684	22805	34289	34289					0.045483797573297124
VGAHGSLEAA	10	Unmodified	_VGAHGSLEAA_					0	0	0		nc|ENSG00000120254|Q6UB35-2|MTHFD1L;MTHFD1L|p.I587*|1|0.1|ENSG00000120254|chr6:150956023-150956023|A/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L	nc|ENSG00000120254|Q6UB35-2|MTHFD1L	nc|ENSG00000120254|Q6UB35-2|MTHFD1L	MULTI-MSMS	HCT116MG_D190212_S3	3	456.23248291015625	2	456.232699	910.450845	0.27526	0.00012558	-0.18053	-8.2363E-05	0.094734	4.3221E-05	456.2325206129432	22.171	0.41682	22.172	22.042	22.459	0.00074577					15	7	3	0	0	0	0.34998	1	7767	7767		46.021	4.1813	1	33279000			35622	2691	22685	22806	34290	34290					-0.007962626590483524
VGAHGSLEAA	10	Unmodified	_VGAHGSLEAA_					0	0	0		nc|ENSG00000120254|Q6UB35-2|MTHFD1L;MTHFD1L|p.I587*|1|0.1|ENSG00000120254|chr6:150956023-150956023|A/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L	nc|ENSG00000120254|Q6UB35-2|MTHFD1L	nc|ENSG00000120254|Q6UB35-2|MTHFD1L	MULTI-MSMS	HCT116MG_D190212_S4	4	456.2322998046875	2	456.232699	910.450845	0.16722	7.6292E-05	-0.039818	-1.8166E-05	0.1274	5.8126E-05	456.23257116576644	22.449	0.57314	22.221	22.039	22.613	-0.22777					15	10	3	0	0	0	0.34998	1	7817	7817		46.021	2.1627	1	16619000			35623	2691	22685	22806	34291	34291					-0.007962626590483524
VGAHGSLEAA	10	Unmodified	_VGAHGSLEAA_					0	0	0		nc|ENSG00000120254|Q6UB35-2|MTHFD1L;MTHFD1L|p.I587*|1|0.1|ENSG00000120254|chr6:150956023-150956023|A/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L	nc|ENSG00000120254|Q6UB35-2|MTHFD1L	nc|ENSG00000120254|Q6UB35-2|MTHFD1L	MULTI-MATCH	HCT116MG_D190212_S1	1		2	456.232699	910.450845	0.10283	4.6916E-05	-0.025704	-1.1727E-05	0.077129	3.5189E-05	456.23259887345273	22.246	0.20877	22.246	22.115	22.324	0	0.0019907	6.9988E-05	NaN	46.021	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3808600			35624	2691	22685	22806							-0.007962626590483524
VGAHNPSAP	9	Unmodified	_VGAHNPSAP_					0	0	0			REV__ENST00000571160.1_1_17:80540661-80543138:+|nuORF	REV__ENST00000571160.1_1_17:80540661-80543138:+|nuORF	MSMS	HCT116MG_D190212_S4	4	425.214599609375	2	425.214309	848.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.506	1	12.337	11.837	12.837	-0.16903								0	0	0	0.7696	1	3887	3887		2.3027	1.5091	1		+		35625	12338	22686	22807	34292	34292					-0.01620514484955038
VGAHRQPP	8	Unmodified	_VGAHRQPP_					0	0	0			REV__ENST00000595091.6_2_19:53837025-53844497:+|nuORF	REV__ENST00000595091.6_2_19:53837025-53844497:+|nuORF	MSMS	HCT116MG_D190212_S3	3	431.23883056640625	2	431.238119	860.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.657	1	36.356	35.856	36.856	-0.30113								0	0	0	0.8837	1	13552	13552		2.8892	0	1		+		35626	16717	22687	22808	34293	34293					0.025871845058986764
VGAIPIRH	8	Unmodified	_VGAIPIRH_					0	0	0			REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1	REV__tr|U7T3R4|U7T3R4_FUSNUGlycerolkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glpKPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	862.94287109375	1	862.525747	861.518471	0.99812	0.0008609	-0.41092	-0.00035443	0.58719	0.00050647	862.5250030403934	60.339	3.2084	60.087	58.06	61.268	-0.25233					110	61	2	0	0	0	0.84415	1	22184	22184		6.3541	0.59368	1	14102000	+		35627	17957	22688	22809	34294	34294					0.08217232062406765
VGAIQRWLKGQ	11	Unmodified	_VGAIQRWLKGQ_					0	0	0		ENST00000442902.1_1_20:50727220-50727574:-|nuORF;ENSG00000089248|ENST00000261735|ERP29	ENST00000442902.1_1_20:50727220-50727574:-|nuORF	ENST00000442902.1_1_20:50727220-50727574:-|nuORF	MSMS	HCT116MG_D190212_S3	3	628.3692626953125	2	628.367121	1254.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.51	1	46.198	45.698	46.698	-0.31237								0	0	0	0.95023	1	17441	17441		6.2058	2.6093	1				35628	1524	22689	22810	34295	34295					0.10251876308257124
VGAKGRCL	8	Unmodified	_VGAKGRCL_					0	0	0			REV__ENST00000375272.5_1_2:171673404-171675102:+|nuORF	REV__ENST00000375272.5_1_2:171673404-171675102:+|nuORF	MSMS	HCT116MG_D190212_S4	4	402.2326354980469	2	402.231448	802.448342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.681	1	36.296	35.796	36.796	-0.38486								0	0	0	0.8837	1	13433	13433		2.8892	0	1		+		35629	15214	22690	22811	34296	34296					0.039216104022898435
VGAKHPKL	8	Unmodified	_VGAKHPKL_					0	0	0			REV__KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant	REV__KCNK3|p.G276Vfs*52|1|0.29|ENSG00000171303|chr2:26728206-26728206|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	425.267578125	2	425.268887	848.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.711	1	49.711	49.211	50.211	0								0	0	0	0.8837	1	18949	18949		2.5775	0	1		+		35630	13339	22691	22812	34297	34297					0.09290116205158938
VGAKVNGR	8	Unmodified	_VGAKVNGR_					0	0	0		tr|U7T4V2|U7T4V2_FUSNUGuanosine-3',5'-bis(Diphosphate)3'-pyrophosphohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00568PE=3SV=1	tr|U7T4V2|U7T4V2_FUSNUGuanosine-3',5'-bis(Diphosphate)3'-pyrophosphohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00568PE=3SV=1	tr|U7T4V2|U7T4V2_FUSNUGuanosine-3',5'-bis(Diphosphate)3'-pyrophosphohydrolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00568PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	400.7412109375	2	400.740494	799.466435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.717	1	46.345	45.845	46.845	-0.37134								0	0	0	0.8837	1	17256	17256		0.79363	0	1				35631	18619	22692	22813	34298	34298					0.05868068648658209
VGALHGGR	8	Unmodified	_VGALHGGR_					0	0	0			REV__chr6:34243518-34244834|215|15.95|0.66|4.6|+|2|HMGA1,None|1	REV__chr6:34243518-34244834|215|15.95|0.66|4.6|+|2|HMGA1,None|1	MULTI-SECPEP	HCT116MG_D190212_S2	2	383.1668395996094	2	383.719562	765.42457	0.057206	2.1951E-05	0.63332	0.00024302	0.69052	0.00026497	383.71957672036825	22.394	0.93491	22.009	21.635	22.57	-0.3852					25	17	2	0	0	0	0.31855	1	7893	7893		13.508	0	1	34903000	+		35632	10186	22693	22814	34299	34299					0.032475129601380104
VGALHGGR	8	Unmodified	_VGALHGGR_					0	0	0			REV__chr6:34243518-34244834|215|15.95|0.66|4.6|+|2|HMGA1,None|1	REV__chr6:34243518-34244834|215|15.95|0.66|4.6|+|2|HMGA1,None|1	MULTI-MSMS	HCT116MG_D190212_S3	3	383.7195739746094	2	383.719562	765.42457	-0.17729	-6.8031E-05	0.17802	6.8308E-05	0.00072156	2.7688E-07	383.7195873870129	20.341	0.46858	20.389	20.207	20.676	0.048107					15	8	2	0	0	0	0.73076	1	7035	7035		19.439	0	1	6487200	+		35633	10186	22693	22814	34300	34300					0.032475129601380104
VGALHGGR	8	Unmodified	_VGALHGGR_					0	0	0			REV__chr6:34243518-34244834|215|15.95|0.66|4.6|+|2|HMGA1,None|1	REV__chr6:34243518-34244834|215|15.95|0.66|4.6|+|2|HMGA1,None|1	MULTI-MSMS	HCT116MG_D190212_S4	4	383.719482421875	2	383.719562	765.42457	0.059825	2.2956E-05	0.38834	0.00014901	0.44817	0.00017197	383.7194490486135	22.14	0.88296	21.912	21.468	22.351	-0.22777					39	16	4	0	0	0	0.81821	1	7820	7820		9.3474	0	1	39296000	+		35634	10186	22693	22814	34301	34301					0.032475129601380104
VGANGQLQYR	10	Unmodified	_VGANGQLQYR_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2915649414062	2	553.291079	1104.56761	0.47587	0.00026329	0.048459	2.6812E-05	0.52433	0.00029011	553.2910400715302	20.788	1.6578	20.578	19.517	21.175	-0.20959					89	31	5	0	0	0	0.2521	1	6815	6815		54.774	11.001	1	129920000			35635	4842	22694	22815	34302	34302					0.019504755606931212
VGANGQLQYR	10	Unmodified	_VGANGQLQYR_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.G2765Rfs*10|1|0.26|ENSG00000166341|chr11:6623383-6623384|-/T|frameshift_variant;DCHS1|p.H2834Sfs*7|1|0.44|ENSG00000166341|chr11:6623177-6623178|-/C|frameshift_variant	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	HCT116MG_D190212_S4	4	553.7556762695312	2	553.291079	1104.56761	0.42966	0.00023773	0.068593	3.7952E-05	0.49825	0.00027568	553.290963500246	19.401	0.57192	19.215	18.869	19.441	-0.18674					19	10	3	0	0	0	0.23995	1	6620	6620		46.021	2.2486	1	4514500			35636	4842	22694	22815	34303	34303					0.019504755606931212
VGAQALKL	8	Unmodified	_VGAQALKL_					0	0	0		SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant;ENSG00000135094|ENST00000257549|SDS	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	SDS|p.G305Afs*18|1|0.17|ENSG00000135094|chr12:113393014-113393014|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	400.2538146972656	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.454	1	43.454	42.954	43.954	0								0	0	0	0.8837	1	16416	16416		0.79363	0	1				35637	3329	22695	22816	34304	34304					0.08903007593983148
VGAQALKNL	9	Unmodified	_VGAQALKNL_					0	0	0		ENST00000608974.5_2_22:42487043-42487355:+|nuORF;ENST00000439129.5_2_22:42487043-42487446:+|nuORF	ENST00000608974.5_2_22:42487043-42487355:+|nuORF	ENST00000608974.5_2_22:42487043-42487355:+|nuORF	MSMS	HCT116MG_D190212_S1	1	457.2767333984375	2	457.276909	912.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.047	1	10.047	9.5473	10.547	0								0	0	0	0.64498	1	3065	3065		21.747	0	1				35638	7907	22696	22817	34305	34305					0.07949777651424483
VGAQLVLS	8	Unmodified	_VGAQLVLS_					0	0	0		CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant;ENSG00000135404|ENST00000257857|CD63	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	CD63|p.A47Lfs*37|1|0.14|ENSG00000135404|chr12:55727267-55727267|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	393.73956298828125	2	393.739628	785.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.04	1	36.739	36.239	37.239	-0.30113								0	0	0	0.8396	1	13707	13707		19.439	0	1				35639	376	22697	22818	34306	34306					0.0633901484004582
VGAQRSLR	8	Unmodified	_VGAQRSLR_					0	0	0		ENSG00000142606|ENST00000378412|MMEL1;nc|ENSG00000142606|Q495T6-3|MMEL1;nc|ENSG00000142606|Q495T6-2|MMEL1	ENSG00000142606|ENST00000378412|MMEL1	ENSG00000142606|ENST00000378412|MMEL1	MULTI-MSMS	HCT116MG_D190212_S1	1	443.7644958496094	2	443.764501	885.514448	-0.053246	-2.3629E-05	0.39861	0.00017689	0.34537	0.00015326	443.7646021798379	42.926	1.5052	42.926	42.019	43.524	0					62	28	3	0	0	0	0.82475	1	16022	16022		8.5933	0.68312	1	38400000			35640	3766	22698	22819	34307	34307					0.06711142568701689
VGARFCSR	8	Unmodified	_VGARFCSR_					0	0	0			REV__SACM1L|p.N346Ifs*2|1|0.35|ENSG00000211456|chr3:45732084-45732084|A/-|frameshift_variant	REV__SACM1L|p.N346Ifs*2|1|0.35|ENSG00000211456|chr3:45732084-45732084|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	448.2304992675781	2	448.231979	894.449405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.561	1	22.176	21.676	22.676	-0.3852								0	0	0	0.8837	1	7999	7999		8.5933	1.304	1		+		35641	14248	22699	22820	34308	34308					-0.002041752288050702
VGARTPKQN	9	Unmodified	_VGARTPKQN_					0	0	0		ENST00000265626.8_3_20:56227391-56286474:-|nuORF;ENST00000341744.7_2_20:56227391-56284786:-|nuORF	ENST00000265626.8_3_20:56227391-56286474:-|nuORF	ENST00000265626.8_3_20:56227391-56286474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	485.7755126953125	2	485.775065	969.535577	0.028044	1.3623E-05	0.64259	0.00031215	0.67063	0.00032578	485.77523004868164	50.613	0.36129	50.613	50.368	50.73	0					9	6	2	0	0	0	0.68648	1	19335	19335		6.2058	2.2614	1	16523000			35642	6901	22700	22821	34309	34309					0.04959107877562019
VGASLLGL	8	Unmodified	_VGASLLGL_					0	0	0		ENST00000371717.7_1_9:139317805-139318060:+|nuORF	ENST00000371717.7_1_9:139317805-139318060:+|nuORF	ENST00000371717.7_1_9:139317805-139318060:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	729.4515991210938	1	729.450517	728.44324	1.1415	0.00083269	-0.24274	-0.00017707	0.89879	0.00065562	729.4503376729334	52.457	0.25716	52.27	52.142	52.399	-0.18725					8	4	2	0	0	0	0.21411	1	20176	20176		70.865	0	1	14420000			35643	7444	22701	22822	34310	34310					0.06815629811319468
VGASLSLLFL	10	Unmodified	_VGASLSLLFL_					0	0	0			REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF	REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MSMS	HCT116MG_D190212_S2	2	510.31036376953125	2	510.310418	1018.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.9	1	56.721	56.221	57.221	-0.17904								0	0	0	0.53351	1	21960	21960		46.021	0	1		+		35644	16144	22702	22823	34311	34311					0.09772388142516775
VGASPGPGA	9	Unmodified	_VGASPGPGA_					0	0	0		ENST00000331593.5_1_1:39957407-39957644:+|nuORF	ENST00000331593.5_1_1:39957407-39957644:+|nuORF	ENST00000331593.5_1_1:39957407-39957644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	712.36279296875	1	712.36243	711.355153	0.63805	0.00045453	-0.12058	-8.5894E-05	0.51748	0.00036863	712.3620141979864	19.303	0.26012	19.303	19.183	19.443	0					6	4	2	0	0	0	0.058138	1	6714	6714		70.716	7.1527	1	2357800			35645	7161	22703	22824	34312	34312					-0.012069907792920276
VGASPGPGA	9	Unmodified	_VGASPGPGA_					0	0	0		ENST00000331593.5_1_1:39957407-39957644:+|nuORF	ENST00000331593.5_1_1:39957407-39957644:+|nuORF	ENST00000331593.5_1_1:39957407-39957644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	712.3634033203125	1	712.36243	711.355153	1.0055	0.00071628	0.1211	8.6271E-05	1.1266	0.00080255	712.3623842351686	19.686	0.31168	19.311	19.143	19.455	-0.37503					11	5	3	0	0	0	0.0093514	1	6838	6838		114.94	10.145	1	10380000			35646	7161	22703	22824	34313	34313					-0.012069907792920276
VGASPGPGA	9	Unmodified	_VGASPGPGA_					0	0	0		ENST00000331593.5_1_1:39957407-39957644:+|nuORF	ENST00000331593.5_1_1:39957407-39957644:+|nuORF	ENST00000331593.5_1_1:39957407-39957644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	712.3627319335938	1	712.36243	711.355153	0.63111	0.00044958	0.18993	0.0001353	0.82104	0.00058488	712.362432339631	19.196	0.72855	19.265	19.083	19.812	0.069159					23	13	3	0	0	0	0.014796	1	6610	6610		101.72	16.365	1	23116000			35647	7161	22703	22824	34314	34314					-0.012069907792920276
VGASPGPGA	9	Unmodified	_VGASPGPGA_					0	0	0		ENST00000331593.5_1_1:39957407-39957644:+|nuORF	ENST00000331593.5_1_1:39957407-39957644:+|nuORF	ENST00000331593.5_1_1:39957407-39957644:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	712.3634033203125	1	712.36243	711.355153	0.74837	0.00053311	0.1064	7.5798E-05	0.85478	0.00060891	712.3623398429363	19.394	0.41592	19.207	19.025	19.441	-0.18674					16	7	3	0	0	0	0.014796	1	6556	6556		101.72	19.858	1	15313000			35648	7161	22703	22824	34315	34315					-0.012069907792920276
VGASPSQK	8	Unmodified	_VGASPSQK_					0	0	0			REV__WDTC1|p.E290Nfs*8|3|0.4|ENSG00000142784|chr1:27294617-27294617|G/-|frameshift_variant	REV__WDTC1|p.E290Nfs*8|3|0.4|ENSG00000142784|chr1:27294617-27294617|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	387.2126159667969	2	387.211235	772.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.841	1	33.456	32.956	33.956	-0.38426								0	0	0	0.8837	1	12333	12333		5.7604	1.0044	1		+		35649	12367	22704	22825	34316	34316					0.012609672835196761
VGATPNWKAH	10	Unmodified	_VGATPNWKAH_					0	0	0			REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MSMS	HCT116MG_D190212_S3	3	540.7838134765625	2	540.78289	1079.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.709	1	14.789	14.289	15.289	0.079683								0	0	0	0.95648	1	4757	4757		3.2813	1.6287	1		+		35650	11171	22705	22826	34317	34317					0.014633943945909778
VGAVEYLAF	9	Unmodified	_VGAVEYLAF_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MSMS	HCT116MG_D190212_S3	3	484.7579040527344	2	484.758018	967.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.263	1	50.951	50.451	51.451	-0.31166								0	0	0	0.64498	1	19351	19351		21.747	0.20967	1		+		35651	9817	22706	22827	34318	34318					0.01643266665939791
VGAVFTGH	8	Unmodified	_VGAVFTGH_					0	0	0			REV__ENSG00000140943|ENST00000343411|MBTPS1	REV__ENSG00000140943|ENST00000343411|MBTPS1	MSMS	HCT116MG_D190212_S3	3	394.2076110839844	2	394.208495	786.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.107	1	25.001	24.501	25.501	-0.10618								0	0	0	0.8837	1	8948	8948		6.3541	0.59368	1		+		35652	12315	22707	22828	34319	34319					0.0006928849171572438
VGAVGRQR	8	Unmodified	_VGAVGRQR_					0	0	0		ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	421.75164794921875	2	421.751393	841.488233	0.10111	4.2641E-05	0.01346	5.6769E-06	0.11457	4.8318E-05	421.75131761729745	42.034	1.0342	41.966	41.345	42.379	-0.068195					30	19	2	0	0	0	0.81821	1	15959	15959		9.3474	9.3474	1	13162000			35653	8997	22708	22829	34320	34320					0.061148733972345326
VGAVKKGL	8	Unmodified	_VGAVKKGL_					0	0	0			REV__FLAD1|p.A383V|1|0.37|ENSG00000160688|chr1:154989590-154989590|C/T|missense_variant	REV__FLAD1|p.A383V|1|0.37|ENSG00000160688|chr1:154989590-154989590|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	386.25665283203125	2	386.257988	770.501424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.535	1	51.223	50.723	51.723	-0.31166								0	0	0	0.8837	1	19460	19460		6.3541	3.4649	1		+		35654	16825	22709	22830	34321	34321					0.1069931145660803
VGAVLRILPS	10	Unmodified	_VGAVLRILPS_					0	0	0		ENST00000569265.1_2_16:50313496-50313595:+|nuORF	ENST00000569265.1_2_16:50313496-50313595:+|nuORF	ENST00000569265.1_2_16:50313496-50313595:+|nuORF	MSMS	HCT116MG_D190212_S2	2	512.5186767578125	2	512.829309	1023.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.172	1	48.04	47.54	48.54	-0.13281								0	0	0	0.90023	1	18396	18396		15.847	5.0233	1				35655	8879	22710	22831	34322	34322					0.13318899127989425
VGAVLTELRPL	11	Unmodified	_VGAVLTELRPL_					0	0	0			REV__KDM5B|p.E1065G|1|0.15|ENSG00000117139|chr1:202736283-202736283|T/C|missense_variant	REV__KDM5B|p.E1065G|1|0.15|ENSG00000117139|chr1:202736283-202736283|T/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	584.35595703125	2	584.358431	1166.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.063	1	53.734	53.234	54.234	-0.32923								0	0	0	0.95521	1	20204	20204		3.5965	1.2938	1		+		35656	16924	22711	22832	34323	34323					0.12562535982578993
VGAVPGITK	9	Unmodified	_VGAVPGITK_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MSMS	HCT116MG_D190212_S4	4	421.25933837890625	2	421.260728	840.506903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.105	1	49.746	49.246	50.246	-0.35878								0	0	0	0.7696	1	18605	18605		2.3027	0	1				35657	3057	22712	22833	34324	34324					0.08026990248413313
VGAVPRALQP	10	Unmodified	_VGAVPRALQP_					0	0	0		ENSG00000173846|ENST00000372201|PLK3;ENST00000461769.1_1_1:45269908-45270454:+|nuORF;ENST00000465443.5_1_1:45270304-45271347:+|nuORF	ENSG00000173846|ENST00000372201|PLK3	ENSG00000173846|ENST00000372201|PLK3	MSMS	HCT116MG_D190212_S4	4	504.3012390136719	2	504.303458	1006.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.958	1	31.583	31.083	32.083	-0.37529								0	0	0	0.95351	1	11620	11620		3.9444	1.8846	1				35658	5307	22713	22834	34325	34325					0.08933155434078799
VGAVPSHL	8	Unmodified	_VGAVPSHL_					0	0	0			REV__ENST00000571508.5_1_17:7225105-7226282:-|nuORF	REV__ENST00000571508.5_1_17:7225105-7226282:-|nuORF	MSMS	HCT116MG_D190212_S1	1	390.2239990234375	2	390.224146	778.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.591	1	28.591	28.091	29.091	0								0	0	0	0.8217	1	10419	10419		20.871	0	1		+		35659	14278	22714	22835	34326	34326					0.03565861525805758
VGAVRRGP	8	Unmodified	_VGAVRRGP_					0	0	0			REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	408.75311279296875	2	406.248486	810.48242	-0.011726	-4.7637E-06	0.091556	3.7194E-05	0.07983	3.2431E-05	406.2485168917951	48.621	2.9455	48.254	47.151	50.096	-0.36727					277	73	7	0	0	0	0.86388	1	18211	18211		2.8892	0	1	1184900000	+		35660	15292	22715	22836	34327	34327					0.06959774885558545
VGAVSIRGDK	10	Unmodified	_VGAVSIRGDK_					0	0	0			REV__nc|ENSG00000125166|P00505-2|GOT2	REV__nc|ENSG00000125166|P00505-2|GOT2	MULTI-MSMS	HCT116MG_D190212_S4	4	501.2909851074219	2	501.290548	1000.56654	0.49076	0.00024602	-0.0017135	-8.5898E-07	0.48905	0.00024516	501.2904648259729	47.011	1.9761	46.641	45.956	47.932	-0.37038					96	53	4	0	0	0	0.87641	1	17603	17603		4.3292	0.38484	1	13843000	+		35661	11805	22716	22837	34328	34328					0.06628261191804086
VGAVSRSGVGL	11	Unmodified	_VGAVSRSGVGL_					0	0	0			REV__SLC25A38|p.N204Ifs*2|1|0.42|ENSG00000144659|chr3:39392003-39392003|A/-|frameshift_variant	REV__SLC25A38|p.N204Ifs*2|1|0.42|ENSG00000144659|chr3:39392003-39392003|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2906188964844	2	501.290548	1000.56654	0.58738	0.00029445	0.012854	6.4435E-06	0.60023	0.00030089	501.2903552549938	46.311	2.0088	46.199	45.7	47.709	-0.11122					75	38	4	0	0	0	0.73981	1	17535	17535		7.1017	0.37856	1	35217000	+		35662	12426	22717	22838	34329	34329					0.06628261191815454
VGAVVFAVR	9	Unmodified	_VGAVVFAVR_					0	0	0		nc|ENSG00000140932|Q8TAZ6-2|CMTM2;ENSG00000140932|ENST00000268595|CMTM2	nc|ENSG00000140932|Q8TAZ6-2|CMTM2	nc|ENSG00000140932|Q8TAZ6-2|CMTM2	MSMS	HCT116MG_D190212_S1	1	459.2506103515625	2	459.281995	916.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.481	1	48.481	47.981	48.981	0								0	0	0	0.76877	1	18449	18449		5.2307	0.47466	1				35663	3691	22718	22839	34330	34330					0.08782385376650836
VGAVVTLD	8	Unmodified	_VGAVVTLD_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000471603.6_1_16:2152958-2153681:-|nuORF;ENST00000532739.1_1_16:16465196-16470832:+|nuORF;ENST00000480227.5_1_16:2149506-2153780:-|nuORF;ENST00000483731.5_1_16:2153201-2162466:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MSMS	HCT116MG_D190212_S3	3	387.2237243652344	2	387.223811	772.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.879	1	32.594	32.094	33.094	-0.28511								0	0	0	0.8837	1	12066	12066		6.3541	0	1				35664	864	22719	22840	34331	34331					0.03775022086097124
VGCGMCCG	8	Unmodified	_VGCGMCCG_					0	0	0			REV__ENSG00000173335|ENST00000376971|CST9	REV__ENSG00000173335|ENST00000376971|CST9	MSMS	HCT116MG_D190212_S1	1	365.1140441894531	2	365.11298	728.211408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.236	1	19.236	18.736	19.736	0								0	0	0	0.8837	1	6659	6659		0.79363	0	1		+		35665	13433	22720	22841	34332	34332					-0.16356943469395446
VGCHGCCA	8	Unmodified	_VGCHGCCA_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense	MSMS	HCT116MG_D190212_S3	3	375.1297607421875	2	375.130019	748.245485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.339	1	35.04	34.54	35.54	-0.29922								0	0	0	0.8837	1	13040	13040		2.8892	2.0956	1		+		35666	10182	22721	22842	34333	34333					-0.13870778986142795
VGCHGCCA	8	Unmodified	_VGCHGCCA_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense	MSMS	HCT116MG_D190212_S3	3	375.1297912597656	2	375.130019	748.245485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.014	1	35.713	35.213	36.213	-0.30042								0	0	0	0.8837	1	13292	13292		2.8892	2.0956	1		+		35667	10182	22721	22842	34334	34334					-0.13870778986142795
VGCHGCCA	8	Unmodified	_VGCHGCCA_					0	0	0			REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense	REV__L1PB1_dup10508|chr13:43056899-43059152:-|2.941020511291588|0.4940460713329822|2.57|483.0|90|1|anti-sense	MSMS	HCT116MG_D190212_S4	4	375.1297302246094	2	375.130019	748.245485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.991	1	35.605	35.105	36.105	-0.38558								0	0	0	0.8837	1	13153	13153		2.8892	2.0956	1		+		35668	10182	22721	22842	34335	34335					-0.13870778986142795
VGCIYIILVL	10	Unmodified	_VGCIYIILVL_					0	0	0			REV__ENST00000469942.1_1_4:100849605-100849701:-|nuORF	REV__ENST00000469942.1_1_4:100849605-100849701:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	553.3392944335938	2	553.338121	1104.66169	0.50066	0.00027704	-0.054312	-3.0053E-05	0.44635	0.00024698	553.337983142611	53.358	1.3014	53.023	52.619	53.92	-0.33473					66	24	4	0	0	0	0.88673	1	20158	20158		1.8442	1.8442	1	52043000	+		35669	15859	22722	22843	34336	34336					0.11354478338625995
VGCMLRTDRCC	11	Unmodified	_VGCMLRTDRCC_					0	0	0			REV__ENST00000482777.5_1_12:111890539-111890719:-|nuORF	REV__ENST00000482777.5_1_12:111890539-111890719:-|nuORF	MSMS	HCT116MG_D190212_S2	2	628.7694091796875	2	628.77197	1255.52939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.941	1	62.811	62.311	63.311	-0.12924								0	0	0	0.95925	1	24402	24402		1.4819	0.8804	1		+		35670	15968	22723	22844	34337	34337					-0.08815561003757466
VGCVFKPTP	9	Unmodified	_VGCVFKPTP_					0	0	0			REV__ENST00000256682.8_1_12:49330008-49330326:-|nuORF	REV__ENST00000256682.8_1_12:49330008-49330326:-|nuORF	MSMS	HCT116MG_D190212_S3	3	474.2373352050781	2	474.254588	946.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.925	1	15.008	14.508	15.508	0.083271								0	0	0	0.76877	1	4844	4844		5.2307	0	1		+		35671	14611	22724	22845	34338	34338					0.019236305137155796
VGCVWRSLGL	10	Unmodified	_VGCVWRSLGL_					0	0	0		ENST00000536896.2_1_1:26145941-26146436:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	MSMS	HCT116MG_D190212_S3	3	545.2862548828125	2	545.297319	1088.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.206	1	57.937	57.437	58.437	-0.26932								0	0	0	0.95507	1	22137	22137		3.5965	1.019	1				35672	8668	22725	22846	34339	34339					0.0393379569939043
VGCYGNMDE	9	Unmodified	_VGCYGNMDE_					0	0	0		ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	ENSG00000169188|ENST00000374987|APEX2	MSMS	HCT116MG_D190212_S3	3	494.1811828613281	2	494.18096	986.347367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.35	1	13.419	12.919	13.919	0.069158								0	0	0	0.7696	1	4227	4227		2.3027	1.5091	1				35673	5054	22726	22847	34340	34340					-0.1463525415337017
VGDDPGGI	8	Unmodified	_VGDDPGGI_					0	0	0			REV__ENST00000585246.5_1_6:32123472-32133959:+|nuORF	REV__ENST00000585246.5_1_6:32123472-32133959:+|nuORF	MSMS	HCT116MG_D190212_S1	1	365.1740417480469	2	365.174318	728.334084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.144	1	23.144	22.644	23.644	0								0	0	0	0.8837	1	8228	8228		2.8892	0	1		+		35674	14296	22727	22848	34341	34341					-0.04095000878805877
VGDEIPPS	8	Unmodified	_VGDEIPPS_					0	0	0			REV__GCLM|p.A128V|1|0.48|ENSG00000023909|chr1:93896775-93896775|G/A|missense_variant	REV__GCLM|p.A128V|1|0.48|ENSG00000023909|chr1:93896775-93896775|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	407.20391845703125	2	407.203076	812.391599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.973	1	10.7	10.2	11.2	-0.27365								0	0	0	0.8837	1	3508	3508		2.5775	0	1		+		35675	10558	22728	22849	34342	34342					-0.022101586732219403
VGDELRCEEH	10	Unmodified	_VGDELRCEEH_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	HCT116MG_D190212_S3	3	593.76171875	2	593.761494	1185.50844	0.70803	0.0004204	0.61481	0.00036505	1.3228	0.00078545	594.2636737818699	26.614	0.26009	26.465	26.307	26.567	-0.14924					6	4	2	0	0	0	0.86868	1	9578	9578		6.7232	0.99131	1	3435800	+		35676	14456	22729	22850	34343	34343					-0.07689788515767759
VGDGPGAEP	9	Unmodified	_VGDGPGAEP_					0	0	0		PRDM13|p.A662V|1|0.36|ENSG00000112238|chr6:99614620-99614620|C/T|missense_variant	PRDM13|p.A662V|1|0.36|ENSG00000112238|chr6:99614620-99614620|C/T|missense_variant	PRDM13|p.A662V|1|0.36|ENSG00000112238|chr6:99614620-99614620|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	798.3628540039062	1	798.362824	797.355547	0.73567	0.00058733	0.078064	6.2323E-05	0.81373	0.00064965	798.362730875754	19.092	1.9266	19.161	18.146	20.072	0.069159					55	36	2	0	0	0	0.097615	1	6258	6258		58.679	18.721	1	6770500			35677	9776	22730	22851	34344	34344					-0.05123615850095575
VGDGPGAEP	9	Unmodified	_VGDGPGAEP_					0	0	0		PRDM13|p.A662V|1|0.36|ENSG00000112238|chr6:99614620-99614620|C/T|missense_variant	PRDM13|p.A662V|1|0.36|ENSG00000112238|chr6:99614620-99614620|C/T|missense_variant	PRDM13|p.A662V|1|0.36|ENSG00000112238|chr6:99614620-99614620|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	798.3627319335938	1	798.362824	797.355547	0.85508	0.00068267	-0.073567	-5.8733E-05	0.78152	0.00062393	798.3625416158883	19.2	1.9113	19.013	17.936	19.847	-0.18674					57	36	2	0	0	0	0.11731	1	6267	6267		54.774	12.679	1	4962200			35678	9776	22730	22851	34345	34345					-0.05123615850095575
VGDIPGVRF	9	Unmodified	_VGDIPGVRF_					0	0	0		ENST00000429775.2_1_X:70182861-70183140:+|nuORF;ENSG00000186468|ENST00000296674|RPS23	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	480.2689514160156	2	480.269084	958.523616	0.25755	0.00012369	-0.20481	-9.8362E-05	0.052744	2.5331E-05	480.26884102871526	46.484	0.20612	46.484	46.337	46.543	0					6	3	2	0	0	0	0.023938	1	17654	17654		92.491	35.02	1	32224000			35679	5886	22731	22852	34346	34346					0.04269491134380132
VGDIPGVRF	9	Unmodified	_VGDIPGVRF_					0	0	0		ENST00000429775.2_1_X:70182861-70183140:+|nuORF;ENSG00000186468|ENST00000296674|RPS23	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	480.2690124511719	2	480.269084	958.523616	0.45627	0.00021913	0.17331	8.3237E-05	0.62959	0.00030237	480.26903913751863	46.557	0.41167	46.445	46.265	46.677	-0.11121					18	7	4	0	0	0	0.0067688	1	17740	17740		122.18	60.822	1	140970000			35680	5886	22731	22852	34347	34347					0.04269491134380132
VGDIPGVRF	9	Unmodified	_VGDIPGVRF_					0	0	0		ENST00000429775.2_1_X:70182861-70183140:+|nuORF;ENSG00000186468|ENST00000296674|RPS23	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENST00000429775.2_1_X:70182861-70183140:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	480.2691650390625	2	480.269084	958.523616	0.33319	0.00016002	-0.23537	-0.00011304	0.09782	4.698E-05	480.268977143461	46.778	0.26067	46.464	46.333	46.594	-0.31405					9	4	3	0	0	0	0.069315	1	17557	17557		65.235	31.133	1	8903300			35681	5886	22731	22852	34348	34348					0.04269491134380132
VGDKGVQP	8	Unmodified	_VGDKGVQP_					0	0	0			REV__nc|ENSG00000149639|O94964-1|MTCL2	REV__nc|ENSG00000149639|O94964-1|MTCL2	MSMS	HCT116MG_D190212_S4	4	400.2177429199219	2	400.21906	798.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.442	1	23.194	22.694	23.694	-0.24775								0	0	0	0.8837	1	8208	8208		7.2892	0.56607	1		+		35682	12571	22732	22853	34349	34349					0.016292538005700408
VGDKIATQKTY	11	Unmodified	_VGDKIATQKTY_					0	0	0		ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	MSMS	HCT116MG_D190212_S2	2	612.3356323242188	2	612.335153	1222.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.571	1	34.409	33.909	34.909	-0.16209								0	0	0	0.88801	1	12867	12867		21.537	4.4241	1				35683	4099	22733	22854	34350	34350					0.05333051360685204
VGDKRQPRLL	10	Unmodified	_VGDKRQPRLL_					0	0	0		TIMM22|p.E43A|1|0.72|ENSG00000177370|chr17:997270-997270|A/C|missense_variant;ENSG00000177370|ENST00000327158|TIMM22	TIMM22|p.E43A|1|0.72|ENSG00000177370|chr17:997270-997270|A/C|missense_variant	TIMM22|p.E43A|1|0.72|ENSG00000177370|chr17:997270-997270|A/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	591.3585205078125	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.437	1	43.063	42.563	43.563	-0.37433								0	0	0	0.96377	1	15967	15967		1.6526	0	1				35684	5454	22734	22855	34351	34351					0.12091589791248225
VGDLQTLRSL	10	Unmodified	_VGDLQTLRSL_					0	0	0		ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	MSMS	HCT116MG_D190212_S2	2	551.3184204101562	2	551.316763	1100.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.674	1	41.606	41.106	42.106	-0.068199								0	0	0	0.93099	1	15754	15754		10.074	0	1				35685	1161	22735	22856	34352	34352					0.07268799534745085
VGDPELGDPPA	11	Unmodified	_VGDPELGDPPA_					0	0	0		ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	MSMS	HCT116MG_D190212_S4	4	534.2324829101562	2	533.756204	1065.49785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.795	1	19.602	19.102	20.102	-0.19367								0	0	0	0.91433	1	6737	6737		18.146	3.3081	1				35686	2181	22736	22857	34353	34353					-0.03227447898552782
VGDPHTVTV	9	Unmodified	_VGDPHTVTV_					0	0	0		BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant;nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;BRD8|p.P1065Lfs*29|1|0.14|ENSG00000112983|chr5:138149724-138149724|G/-|frameshift_variant;ENSG00000112983|ENST00000254900|BRD8	BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant	BRD8|p.G620Wfs*10|1|0.17|ENSG00000112983|chr5:138164101-138164102|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	462.7430725097656	2	462.742899	923.471246	0.33462	0.00015484	-0.047092	-2.1791E-05	0.28753	0.00013305	462.7428271463567	28.324	0.26114	28.118	27.968	28.229	-0.20593					8	4	2	0	0	0	0.010304	1	10262	10262		112.59	61.738	1	6086600			35687	278	22737	22858	34354	34354					0.006449080007769226
VGDPNSFLNY	10	Unmodified	_VGDPNSFLNY_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MSMS	HCT116MG_D190212_S1	1	563.2640991210938	2	563.264196	1124.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.795	1	49.795	49.295	50.295	0								0	0	0	0.8981	1	18983	18983		16.149	3.6176	1				35688	4737	22738	22859	34355	34355					-0.04343741661659806
VGDPNSFLNY	10	Unmodified	_VGDPNSFLNY_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-MSMS	HCT116MG_D190212_S2	2	563.2633056640625	2	563.264196	1124.51384	0.10124	5.7025E-05	-0.63774	-0.00035921	-0.5365	-0.00030219	563.2638055666056	49.978	0.25554	49.814	49.636	49.891	-0.16369					10	4	3	0	0	0	0.037651	1	19142	19142		96.367	41.593	1	49448000			35689	4737	22738	22859	34356	34356					-0.04343741661659806
VGDPNSFLNY	10	Unmodified	_VGDPNSFLNY_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-MSMS	HCT116MG_D190212_S2	2	1125.519775390625	1	1125.52112	1124.51384	0.24167	0.000272	0.11436	0.00012872	0.35603	0.00040072	1125.5211826917612	49.927	0.20495	49.763	49.686	49.891	-0.16369					6	3	2	0	0	0	0.019418	1	19148	19148		121.53	77.676	1	25223000			35690	4737	22738	22859	34357	34357					-0.04343741661659806
VGDPNSFLNY	10	Unmodified	_VGDPNSFLNY_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1125.52112	1124.51384	0.50864	0.00057248	-0.24326	-0.00027379	0.26538	0.00029869	1125.52037216997	49.725	0.15519	49.725	49.595	49.75	0	-0.019388	-8.6686E-05	NaN	121.53	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8356500			35691	4737	22738	22859							-0.04343741661659806
VGDPSTTNL	9	Unmodified	_VGDPSTTNL_					0	0	0		U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant;U2SURP|p.S934Afs*11|1|0.34|ENSG00000163714|chr3:143054963-143054963|C/-|frameshift_variant;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	903.4419555664062	1	903.441802	902.434526	0.78752	0.00071148	0.14618	0.00013206	0.9337	0.00084355	903.442139792636	30.956	0.20768	30.689	30.56	30.768	-0.26704					6	3	2	0	0	0	0.0066233	1	11429	11429		123.45	55.37	1	13618000			35692	4624	22739	22860	34358	34358					-0.020593886158053465
VGDPSTTNL	9	Unmodified	_VGDPSTTNL_					0	0	0		U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant;U2SURP|p.S934Afs*11|1|0.34|ENSG00000163714|chr3:143054963-143054963|C/-|frameshift_variant;nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	U2SURP|p.K866Nfs*10|1|0.31|ENSG00000163714|chr3:143050987-143050987|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	903.4430541992188	1	903.441802	902.434526	0.66109	0.00059726	-0.17443	-0.00015759	0.48665	0.00043966	903.4414972483626	31.085	0.26098	30.824	30.656	30.917	-0.26071					7	4	2	0	0	0	0.0066233	1	11361	11361		123.45	45.301	1	4628200			35693	4624	22739	22860	34359	34359					-0.020593886158053465
VGDRGDRGP	9	Unmodified	_VGDRGDRGP_					0	0	0			REV__ENSG00000185303|ENST00000372325|SFTPA2	REV__ENSG00000185303|ENST00000372325|SFTPA2	MSMS	HCT116MG_D190212_S4	4	464.566650390625	2	464.733397	927.452242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.406	1	16.243	15.743	16.743	-0.16364								0	0	0	0.76781	1	5368	5368		8.5933	0	1		+		35694	13841	22740	22861	34360	34360					-0.014386285702812529
VGDRNQAP	8	Unmodified	_VGDRNQAP_					0	0	0		ENST00000434095.2_1_9:131904378-131904447:+|nuORF	ENST00000434095.2_1_9:131904378-131904447:+|nuORF	ENST00000434095.2_1_9:131904378-131904447:+|nuORF	MSMS	HCT116MG_D190212_S1	1	428.3233642578125	2	428.717216	855.419879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.174	1	15.174	14.674	15.674	0								0	0	0	0.8837	1	5022	5022		2.8892	0	1				35695	7871	22741	22862	34361	34361					-0.013614159732924236
VGDRRTLL	8	Unmodified	_VGDRRTLL_					0	0	0		ENST00000452684.2_2_6:160113021-160113264:-|nuORF	ENST00000452684.2_2_6:160113021-160113264:-|nuORF	ENST00000452684.2_2_6:160113021-160113264:-|nuORF	MSMS	HCT116MG_D190212_S3	3	465.28070068359375	2	465.279983	928.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.751	1	38.45	37.95	38.95	-0.30137								0	0	0	0.8837	1	14365	14365		0.79363	0	1				35696	7997	22742	22863	34362	34362					0.07828295882961811
VGDRSRRGPK	10	Unmodified	_VGDRSRRGPK_					0	0	0		ENST00000591231.5_1_19:34112864-34158706:+|nuORF;ENST00000438847.7_1_19:34112900-34262890:+|nuORF	ENST00000591231.5_1_19:34112864-34158706:+|nuORF	ENST00000591231.5_1_19:34112864-34158706:+|nuORF	MSMS	HCT116MG_D190212_S4	4	564.3226318359375	2	564.323245	1126.63194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.098	1	36.714	36.214	37.214	-0.38486								0	0	0	0.95648	1	13601	13601		3.2813	0.99853	1				35697	7904	22743	22864	34363	34363					0.07368675437533057
VGDTFCYF	8	Unmodified	_VGDTFCYF_					0	0	0		nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000461999.1_1_11:118968563-118968800:-|nuORF	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	nc|ENSG00000172269|Q9H3H5-3|DPAGT1	MSMS	HCT116MG_D190212_S3	3	476.1988220214844	2	476.199479	950.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.496	1	54.2	53.7	54.7	-0.29587								0	0	0	0.8837	1	20651	20651		6.3541	0	1				35698	5244	22744	22865	34364	34364					-0.09277214545318202
VGDTQVVVF	9	Unmodified	_VGDTQVVVF_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S2	2	963.5145263671875	1	963.514573	962.507297	0.60916	0.00058693	-0.2611	-0.00025157	0.34806	0.00033536	963.514043209001	50.962	0.31007	50.784	50.604	50.914	-0.17868					9	5	2	0	0	0	0.012168	1	19547	19547		108	53.223	1	23604000			35699	4280	22745	22866	34365	34365					0.024543651776298248
VGDTQVVVF	9	Unmodified	_VGDTQVVVF_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S3	3	963.5144653320312	1	963.514573	962.507297	0.61117	0.00058887	-0.10654	-0.00010266	0.50462	0.00048621	963.5142027654489	51.177	0.31418	50.865	50.7	51.015	-0.31166					9	5	2	0	0	0	0.012168	1	19311	19311		108	53.223	1	8663000			35700	4280	22745	22866	34366	34366					0.024543651776298248
VGDTQVVVF	9	Unmodified	_VGDTQVVVF_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MSMS	HCT116MG_D190212_S3	3	482.2608947753906	2	482.260925	962.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.234	1	50.922	50.422	51.422	-0.31166								0	0	0	0.1044	1	19340	19340		54.774	22.657	1				35701	4280	22745	22866	34367	34367					0.024543651776298248
VGDTQVVVF	9	Unmodified	_VGDTQVVVF_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	HCT116MG_D190212_S4	4	963.5155639648438	1	963.514573	962.507297	0.53031	0.00051096	-0.28732	-0.00027684	0.24298	0.00023412	963.5147255917817	51.174	0.26044	50.82	50.678	50.938	-0.35376					7	4	2	0	0	0	0.020181	1	19061	19061		96.285	50.264	1	2707800			35702	4280	22745	22866	34368	34368					0.024543651776298248
VGDTRVSLTYK	11	Unmodified	_VGDTRVSLTYK_					0	0	0		ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant;ADAMTS2|p.L1140Wfs*22|1|0.07|ENSG00000087116|chr5:179114085-179114085|G/-|frameshift_variant;ADAMTS2|p.L1140Pfs*24|1|0.29|ENSG00000087116|chr5:179114084-179114085|-/G|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2	ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant	ADAMTS2|p.V1075Sfs*32|1|0.38|ENSG00000087116|chr5:179114280-179114280|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	619.8431396484375	2	619.840602	1237.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.39	1	15.475	14.975	15.975	0.085142								0	0	0	0.95196	1	5032	5032		5.2969	1.7004	1				35703	46	22746	22867	34369	34369					0.05732453734935916
VGDVTGAQAY	10	Unmodified	_VGDVTGAQAY_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	HCT116MG_D190212_S1	1	980.4689331054688	1	980.468352	979.461075	0.72059	0.00070652	0.086672	8.4979E-05	0.80726	0.00079149	980.4684182639546	29.451	0.26027	29.451	29.321	29.581	0					7	4	2	0	0	0	0.029414	1	10772	10772		103.35	45.882	1	21902000			35704	3742	22747	22868	34370	34370					-0.02947699724472841
VGDVTGAQAY	10	Unmodified	_VGDVTGAQAY_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	HCT116MG_D190212_S2	2	980.4695434570312	1	980.468352	979.461075	0.89827	0.00088072	-0.13995	-0.00013722	0.75832	0.00074351	980.4682075168804	29.719	0.36156	29.418	29.237	29.599	-0.30095					16	6	4	0	0	0	0.023158	1	10899	10899		114.65	60.816	1	56252000			35705	3742	22747	22868	34371	34371					-0.02947699724472841
VGDVTGAQAY	10	Unmodified	_VGDVTGAQAY_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000527146.1_2_11:308871-309162:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	980.468352	979.461075	0.90092	0.00088332	1.0911	0.0010698	1.992	0.0019531	980.4696118439263	29.82	0.16215	29.584	29.5	29.662	-0.23655	0.099478	0.0010188	NaN	114.65	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3155800			35706	3742	22747	22868							-0.02947699724472841
VGDVWKPPPR	10	Unmodified	_VGDVWKPPPR_					0	0	0			REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	REV__ENST00000468590.1_1_20:57227170-57245628:+|nuORF	MSMS	HCT116MG_D190212_S1	1	575.81982421875	2	575.822015	1149.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.1	1	16.1	15.6	16.6	0								0	0	0	0.94551	1	5395	5395		5.7319	2.7366	1		+		35707	15848	22748	22869	34372	34372					0.060648269798548426
VGEAQFCLL	9	Unmodified	_VGEAQFCLL_					0	0	0			REV__ENST00000471186.5_1_2:118867212-118867425:+|nuORF	REV__ENST00000471186.5_1_2:118867212-118867425:+|nuORF	MSMS	HCT116MG_D190212_S3	3	490.249755859375	2	490.249503	978.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.452	1	31.181	30.681	31.681	-0.27028								0	0	0	0.768	1	11491	11491		7.9102	0.62092	1		+		35708	15870	22749	22870	34373	34373					-0.0056497721150208235
VGEAQSLTTSL	11	Unmodified	_VGEAQSLTTSL_					0	0	0			REV__nc|ENSG00000102385|Q13474-2|DRP2	REV__nc|ENSG00000102385|Q13474-2|DRP2	MSMS	HCT116MG_D190212_S4	4	553.2908935546875	2	553.290411	1104.56627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.683	1	18.502	18.002	19.002	-0.18052								0	0	0	0.74961	1	6287	6287		36.506	0.37917	1		+		35709	11150	22750	22871	34374	34374					0.018167966812825398
VGEAVPTAAP	10	Unmodified	_VGEAVPTAAP_					0	0	0		SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.29|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF	SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant	SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	456.2440185546875	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.194	1	16.194	15.694	16.694	0								0	0	0	0.92607	1	5433	5433		10.074	1.4806	1				35710	1214	22751	22872	34375	34375					0.017177921435177268
VGECVQYFFVL	11	Unmodified	_VGECVQYFFVL_					0	0	0			REV__ENSG00000204410|ENST00000375750|MSH5	REV__ENSG00000204410|ENST00000375750|MSH5	MSMS	HCT116MG_D190212_S1	1	435.2183837890625	3	435.217892	1302.63185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.603	1	14.603	14.103	15.103	0								0	0	0	0.95581	1	4792	4792		1.3296	0.70282	1		+		35711	14196	22752	22873	34376	34376					-0.00736505397367182
VGEDKYFCENR	11	Unmodified	_VGEDKYFCENR_					0	0	0		USP1|p.C509R|1|0.08|ENSG00000162607|chr1:62448569-62448569|T/C|missense_variant	USP1|p.C509R|1|0.08|ENSG00000162607|chr1:62448569-62448569|T/C|missense_variant	USP1|p.C509R|1|0.08|ENSG00000162607|chr1:62448569-62448569|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	680.3051147460938	2	680.303526	1358.5925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.378	1	15.463	14.963	15.963	0.084656								0	0	0	0.95196	1	5027	5027		5.2969	0	1				35712	18683	22753	22874	34377	34377					-0.07245257418890105
VGEDQLLH	8	Unmodified	_VGEDQLLH_					0	0	0			REV__ENST00000420434.7_1_2:231175469-231175526:+|nuORF	REV__ENST00000420434.7_1_2:231175469-231175526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	455.7347717285156	2	455.735074	909.455596	-0.14365	-6.5465E-05	0.10718	4.8844E-05	-0.036469	-1.662E-05	455.73506817682744	18.304	0.2092	17.941	17.851	18.061	-0.36325					5	3	2	0	0	0	0.53394	1	6312	6312		38.151	0	1	5083700	+		35713	15516	22754	22875	34378	34378					-0.0027537851626675547
VGEDQVHPP	9	Unmodified	_VGEDQVHPP_					0	0	0		ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR	ENSG00000063438|ENST00000684583|AHRR	ENSG00000063438|ENST00000684583|AHRR	MSMS	HCT116MG_D190212_S4	4	489.2381896972656	2	489.237981	976.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.838	1	19.644	19.144	20.144	-0.19367								0	0	0	0.69272	1	6754	6754		19.439	0	1				35714	1132	22755	22876	34379	34379					-0.02776280004616183
VGEDSEDE	8	Unmodified	_VGEDSEDE_					0	0	0		EVA1C|p.E369G|1|0.23|ENSG00000166979|chr21:32514970-32514970|A/G|missense_variant	EVA1C|p.E369G|1|0.23|ENSG00000166979|chr21:32514970-32514970|A/G|missense_variant	EVA1C|p.E369G|1|0.23|ENSG00000166979|chr21:32514970-32514970|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	440.16455078125	2	440.164345	878.314136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.077	1	12.912	12.412	13.412	-0.16496								0	0	0	0.8837	1	4088	4088		0.79363	0	1				35715	9143	22756	22877	34380	34380					-0.12988841400078854
VGEEEAEEEE	10	Unmodified	_VGEEEAEEEE_					0	0	0			REV__PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	REV__PCM1|p.K787Nfs*31|2|0.32|ENSG00000078674|chr8:17962067-17962067|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	383.8199462890625	3	383.819179	1148.43571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.312	1	18.131	17.631	18.631	-0.18052								0	0	0	0.95351	1	6137	6137		1.9064	0	1		+		35716	10839	22757	22878	34381	34381					-0.1325726382819994
VGEEFKSART	10	Unmodified	_VGEEFKSART_					0	0	0		ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant;ITGAE|p.L601Pfs*8|1|0.31|ENSG00000083457|chr17:3751741-3751742|-/G|frameshift_variant;ITGAE|p.I909Lfs*19|1|0.09|ENSG00000083457|chr17:3732398-3732398|C/-|frameshift_variant;ENSG00000083457|ENST00000263087|ITGAE	ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant	ITGAE|p.A480Lfs*87|1|0.48|ENSG00000083457|chr17:3753872-3753872|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	562.2919311523438	2	562.290745	1122.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.804	1	15.804	15.304	16.304	0								0	0	0	0.95507	1	5276	5276		3.5965	0.31518	1				35717	1431	22758	22879	34382	34382					0.010556361209864917
VGEEQKWER	9	Unmodified	_VGEEQKWER_					0	0	0		ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	MSMS	HCT116MG_D190212_S4	4	580.7884521484375	2	580.78837	1159.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.95	1	22.713	22.213	23.213	-0.23758								0	0	0	0.67173	1	8011	8011		20.454	1.0917	1				35718	8357	22759	22880	34383	34383					-0.01121248021786414
VGEFGYRVYS	10	Unmodified	_VGEFGYRVYS_					0	0	0			REV__nc|ENSG00000172350|Q9H172-4|ABCG4	REV__nc|ENSG00000172350|Q9H172-4|ABCG4	MSMS	HCT116MG_D190212_S3	3	588.7867431640625	2	588.787838	1175.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.981	1	30.721	30.221	31.221	-0.26071								0	0	0	0.90892	1	11302	11302		13.906	2.4113	1		+		35719	13384	22760	22881	34384	34384					-0.019634623906540583
VGEGANNF	8	Unmodified	_VGEGANNF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	HCT116MG_D190212_S3	3	807.3645629882812	1	807.363158	806.355882	0.85945	0.00069389	0.095668	7.7239E-05	0.95512	0.00077113	807.3629600164236	19.471	0.57286	19.531	19.229	19.802	0.05983					15	10	2	0	0	0	0.36164	1	6655	6655		53.576	26.692	1	2501900	+		35720	13921	22761	22882	34385	34385					-0.05504196130243599
VGEGANNF	8	Unmodified	_VGEGANNF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	HCT116MG_D190212_S3	3	404.18560791015625	2	404.185217	806.355882	-0.015422	-6.2333E-06	0.18479	7.4691E-05	0.16937	6.8458E-05	404.18523928838465	19.469	0.41681	19.528	19.281	19.698	0.059828					11	7	2	0	0	0	0.46267	1	6691	6691		44.407	21.259	1	1807100	+		35721	13921	22761	22882	34386	34386					-0.05504196130243599
VGEGANNF	8	Unmodified	_VGEGANNF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	HCT116MG_D190212_S4	4	807.3624267578125	1	807.363158	806.355882	0.89061	0.00071905	0.056104	4.5296E-05	0.94671	0.00076434	807.3630073106327	19.537	0.71815	19.345	18.916	19.634	-0.19203					18	13	2	0	0	0	0.41924	1	6619	6619		48.346	21.462	1	2624900	+		35722	13921	22761	22882	34387	34387					-0.05504196130243599
VGEGANNF	8	Unmodified	_VGEGANNF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	HCT116MG_D190212_S4	4	404.1850891113281	2	404.185217	806.355882	0.097545	3.9426E-05	-0.074145	-2.9969E-05	0.0234	9.4578E-06	404.1850193603995	19.498	0.56215	19.311	19.077	19.639	-0.18674					13	10	2	0	0	0	0.64404	1	6649	6649		28.487	5.3384	1	2230200	+		35723	13921	22761	22882	34388	34388					-0.05504196130243599
VGEGANNF	8	Unmodified	_VGEGANNF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	807.363158	806.355882	0.85945	0.00069389	0.095668	7.7239E-05	0.95512	0.00077113	807.3629600164236	19.471	0.57286	19.531	19.229	19.802	0.05983	0.092807	9.0819E-06	NaN	53.576	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2501900	+		35724	13921	22761	22882							-0.05504196130243599
VGEGANNF	8	Unmodified	_VGEGANNF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	404.185217	806.355882	-0.015422	-6.2333E-06	0.18479	7.4691E-05	0.16937	6.8458E-05	404.18523928838465	19.469	0.41681	19.528	19.281	19.698	0.059828	0.10869	8.6152E-05	NaN	44.407	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1807100	+		35725	13921	22761	22882							-0.05504196130243599
VGEGANNF	8	Unmodified	_VGEGANNF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	807.363158	806.355882	0.89061	0.00071905	0.056104	4.5296E-05	0.94671	0.00076434	807.3630073106327	19.537	0.71815	19.345	18.916	19.634	-0.19203	-0.092807	-2.2861E-05	NaN	53.576	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2624900	+		35726	13921	22761	22882							-0.05504196130243599
VGEGAYRWTV	10	Unmodified	_VGEGAYRWTV_					0	0	0		TASP1|p.A174T|1|0.34|ENSG00000089123|chr20:13569555-13569555|C/T|missense_variant	TASP1|p.A174T|1|0.34|ENSG00000089123|chr20:13569555-13569555|C/T|missense_variant	TASP1|p.A174T|1|0.34|ENSG00000089123|chr20:13569555-13569555|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	569.2901000976562	2	569.288005	1136.56146	0.47535	0.00027061	3.3567	0.0019109	3.8321	0.0021816	569.2903054796237	33.983	0.26045	33.689	33.559	33.819	-0.29419					8	4	2	0	0	0	0.70908	1	12532	12532		22.736	3.4793	1	3304600			35727	18259	22762	22883	34389	34389					-0.001360426708288287
VGEGLGKRKT	10	Unmodified	_VGEGLGKRKT_					0	0	0			REV__ZSWIM8|p.P689Lfs*46|1|0.15|ENSG00000214655|chr10:73792600-73792600|C/-|frameshift_variant	REV__ZSWIM8|p.P689Lfs*46|1|0.15|ENSG00000214655|chr10:73792600-73792600|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	522.8114624023438	2	522.811648	1043.60874	0.48416	0.00025313	0.091478	4.7826E-05	0.57564	0.00030095	522.8114732266479	52.973	0.97729	52.973	52.485	53.462	0					23	18	2	0	0	0	0.87059	1	20302	20302		5.7319	0.97584	1	19462000	+		35728	18096	22763	22884	34390	34390					0.08868236600187629
VGEGLTQRPT	10	Unmodified	_VGEGLTQRPT_					0	0	0		ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	530.2598876953125	2	529.285463	1056.55637	0.64071	0.00033912	0.66946	0.00035434	1.3102	0.00069345	529.285990086101	33.035	0.33475	32.75	32.508	32.843	-0.2851					22	16	2	0	0	0	0.73913	1	12125	12125		17.113	0	1	30333000			35729	8505	22764	22885	34391	34391					0.030356534665770596
VGEGRGGF	8	Unmodified	_VGEGRGGF_					0	0	0			REV__PIANP|p.P178S|1|0.26|ENSG00000139200|chr12:6696516-6696516|G/A|missense_variant	REV__PIANP|p.P178S|1|0.26|ENSG00000139200|chr12:6696516-6696516|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	389.6954345703125	2	389.695752	777.376952	-0.037472	-1.4603E-05	-0.19916	-7.7611E-05	-0.23663	-9.2214E-05	389.6956604535326	15.827	0.62559	15.493	15.064	15.689	-0.33451					17	11	2	0	0	0	0.78216	1	5268	5268		13.508	4.1604	1	2374400	+		35730	12251	22765	22886	34392	34392					-0.020641860307023308
VGEGRGGF	8	Unmodified	_VGEGRGGF_					0	0	0			REV__PIANP|p.P178S|1|0.26|ENSG00000139200|chr12:6696516-6696516|G/A|missense_variant	REV__PIANP|p.P178S|1|0.26|ENSG00000139200|chr12:6696516-6696516|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	389.6959533691406	2	389.695752	777.376952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.849	1	14.932	14.432	15.432	0.083271								0	0	0	0.8837	1	4813	4813		9.3474	0.75416	1		+		35731	12251	22765	22886	34393	34393					-0.020641860307023308
VGEGRGGF	8	Unmodified	_VGEGRGGF_					0	0	0			REV__PIANP|p.P178S|1|0.26|ENSG00000139200|chr12:6696516-6696516|G/A|missense_variant	REV__PIANP|p.P178S|1|0.26|ENSG00000139200|chr12:6696516-6696516|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	389.695752	777.376952	-0.037472	-1.4603E-05	-0.19916	-7.7611E-05	-0.23663	-9.2214E-05	389.6956604535326	15.827	0.62559	15.493	15.064	15.689	-0.33451	0	0	NaN	13.508	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2374400	+		35732	12251	22765	22886							-0.020641860307023308
VGEHSPSLEQP	11	Unmodified	_VGEHSPSLEQP_					0	0	0		ENST00000498678.5_1_17:46651246-46667593:-|nuORF	ENST00000498678.5_1_17:46651246-46667593:-|nuORF	ENST00000498678.5_1_17:46651246-46667593:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	590.28515625	2	590.28566	1178.55677	0.59174	0.0003493	-0.23905	-0.00014111	0.35269	0.00020819	590.2855428256001	18.562	0.88127	18.381	17.89	18.771	-0.18052					39	16	3	0	0	0	0.70073	1	6157	6157		21.537	0	1	5655600			35733	8413	22766	22887	34394	34394					-0.025369716042632717
VGEINVVRIP	10	Unmodified	_VGEINVVRIP_					0	0	0			REV__ENST00000486664.5_1_17:41107347-41108531:-|nuORF	REV__ENST00000486664.5_1_17:41107347-41108531:-|nuORF	MSMS	HCT116MG_D190212_S3	3	548.3278198242188	2	548.329673	1094.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.317	1	34.023	33.523	34.523	-0.29419								0	0	0	0.90023	1	12627	12627		15.847	5.7733	1		+		35734	14432	22767	22888	34395	34395					0.10125693777035849
VGEINVVRIP	10	Unmodified	_VGEINVVRIP_					0	0	0			REV__ENST00000486664.5_1_17:41107347-41108531:-|nuORF	REV__ENST00000486664.5_1_17:41107347-41108531:-|nuORF	MSMS	HCT116MG_D190212_S4	4	548.32763671875	2	548.329673	1094.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.355	1	33.97	33.47	34.47	-0.38558								0	0	0	0.93854	1	12541	12541		7.2892	0	1		+		35735	14432	22767	22888	34396	34396					0.10125693777035849
VGEKFSTWEP	10	Unmodified	_VGEKFSTWEP_					0	0	0		ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MSMS	HCT116MG_D190212_S4	4	590.2864990234375	2	590.287671	1178.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.766	1	28.426	27.926	28.926	-0.34059								0	0	0	0.92917	1	10359	10359		9.3831	1.473	1				35736	2844	22768	22889	34397	34397					-0.021348821104993476
VGEKIYEELS	10	Unmodified	_VGEKIYEELS_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MSMS	HCT116MG_D190212_S1	1	584.1519165039062	2	583.800611	1165.58667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.824	1	21.824	21.324	22.324	0								0	0	0	0.92917	1	7697	7697		9.3831	2.66	1				35737	6271	22769	22890	34398	34398					0.010499673411004551
VGEKMMGRL	9	Unmodified	_VGEKMMGRL_					0	0	0		ENST00000453015.1_1_1:44169233-44170247:-|nuORF	ENST00000453015.1_1_1:44169233-44170247:-|nuORF	ENST00000453015.1_1_1:44169233-44170247:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	510.77069091796875	2	510.77008	1019.52561	0.085786	4.3817E-05	0.12793	6.5344E-05	0.21372	0.00010916	510.77030021592253	18.266	0.3614	18.089	17.894	18.256	-0.17649					9	6	2	0	0	0	0.53593	1	6122	6122		14.838	1.7958	1	2921100			35738	7999	22770	22891	34399	34399					0.01662460556337919
VGEKMMGRL	9	Unmodified	_VGEKMMGRL_					0	0	0		ENST00000453015.1_1_1:44169233-44170247:-|nuORF	ENST00000453015.1_1_1:44169233-44170247:-|nuORF	ENST00000453015.1_1_1:44169233-44170247:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	510.77008	1019.52561	0.020145	1.0289E-05	0.81457	0.00041606	0.83471	0.00042635	510.7702226826186	17.985	0.3119	18.061	17.945	18.257	0.076334	-0.013928	0.00031088	NaN	14.838	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2595400			35739	7999	22770	22891							0.01662460556337919
VGEKMMGRL	9	Unmodified	_VGEKMMGRL_					0	0	0		ENST00000453015.1_1_1:44169233-44170247:-|nuORF	ENST00000453015.1_1_1:44169233-44170247:-|nuORF	ENST00000453015.1_1_1:44169233-44170247:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	510.77008	1019.52561	0.085786	4.3817E-05	0.12793	6.5344E-05	0.21372	0.00010916	510.77030021592253	18.266	0.3614	18.089	17.894	18.256	-0.17649	0.013928	-0.00039054	NaN	14.838	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2921100			35740	7999	22770	22891							0.01662460556337919
VGEKRLLLRLY	11	Unmodified	_VGEKRLLLRLY_					0	0	0			REV__ENSG00000115073|ENST00000289228|ACTR1B	REV__ENSG00000115073|ENST00000289228|ACTR1B	MSMS	HCT116MG_D190212_S3	3	680.425048828125	2	680.427179	1358.8398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.234	1	57.965	57.465	58.465	-0.26932								0	0	0	0.9619	1	22149	22149		0.35063	0.35063	1		+		35741	11525	22771	22892	34400	34400					0.1747386458202982
VGEMPEEEND	10	Unmodified	_VGEMPEEEND_					0	0	0			REV__ENSG00000115274|ENST00000233331|INO80B	REV__ENSG00000115274|ENST00000233331|INO80B	MSMS	HCT116MG_D190212_S3	3	574.7257080078125	2	574.724243	1147.43393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.177	1	19.246	18.746	19.746	0.069159								0	0	0	0.92272	1	6560	6560		10.824	0.75	1		+		35742	11537	22772	22893	34401	34401					-0.13388596117829366
VGENGIPNHGL	11	Unmodified	_VGENGIPNHGL_					0	0	0			REV__ENSG00000104866|ENST00000221462|PPP1R37	REV__ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	HCT116MG_D190212_S3	3	553.7823486328125	2	553.783087	1105.55162	0.32122	0.00017788	-0.10201	-5.6492E-05	0.2192	0.00012139	553.7830429469633	21.318	0.99675	21.336	20.75	21.747	0.018446					46	18	3	0	0	0	0.57532	1	7306	7306		38.176	5.3899	1	19491000	+		35743	11225	22773	22894	34402	34402					0.0030676932381084043
VGENGIPNHGL	11	Unmodified	_VGENGIPNHGL_					0	0	0			REV__ENSG00000104866|ENST00000221462|PPP1R37	REV__ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	HCT116MG_D190212_S4	4	553.78271484375	2	553.783087	1105.55162	0.4608	0.00025518	-0.26237	-0.00014529	0.19843	0.00010989	553.782939565323	21.58	1.1423	21.362	20.751	21.893	-0.21832					55	21	4	0	0	0	0.63759	1	7290	7290		31.268	2.7738	1	18348000	+		35744	11225	22773	22894	34403	34403					0.0030676932381084043
VGENTIHHTA	10	Unmodified	_VGENTIHHTA_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	HCT116MG_D190212_S3	3	360.1806335449219	3	360.180717	1077.52032	-0.14934	-5.3791E-05	-0.11355	-4.0897E-05	-0.26289	-9.4688E-05	360.18062245565653	15.916	1.0404	16.001	15.717	16.757	0.085423					42	19	3	0	0	0	0.77749	1	5419	5419		8.4443	2.2525	1	3870500	+		35745	12541	22774	22895	34404	34404					-0.01533803710299253
VGEPGLVRRL	10	Unmodified	_VGEPGLVRRL_					0	0	0		SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant;SPEG|p.R3177Pfs*3|1|0.2|ENSG00000072195|chr2:219492170-219492171|-/G|frameshift_variant;nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG	SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	SPEG|p.P2584Qfs*35|1|0.09|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	548.7890625	2	548.33529	1094.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.715	1	37.715	37.215	38.215	0								0	0	0	0.95351	1	14099	14099		3.9444	0	1				35746	1264	22775	22896	34405	34405					0.11248515871170639
VGEPGPAG	8	Unmodified	_VGEPGPAG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	684.2034912109375	1	683.335881	682.328604	0.62083	0.00042423	0.34509	0.00023581	0.96592	0.00066005	683.3359696910564	18.886	1.2971	18.704	17.837	19.134	-0.18196					43	24	2	0	0	0	0.40466	2	6182	6182;6447		49.669	9.2203	1	5580300			35747	4715	22776	22897	34406;34407	34406					-0.02526679670620524
VGEQAANQPAP	11	Unmodified	_VGEQAANQPAP_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;TBC1D2B|p.L914Yfs*19|1|0.31|ENSG00000167202|chr15:77998312-77998312|G/-|frameshift_variant;ENSG00000167202|ENST00000300584|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MSMS	HCT116MG_D190212_S3	3	541.2797241210938	2	541.26727	1080.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.103	1	22.104	21.604	22.604	0.00074577								0	0	0	0.8787	1	7737	7737		22.736	4.5899	1				35748	4910	22777	22898	34408	34408					-0.017052234301445424
VGEQAANQPAP	11	Unmodified	_VGEQAANQPAP_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;TBC1D2B|p.L914Yfs*19|1|0.31|ENSG00000167202|chr15:77998312-77998312|G/-|frameshift_variant;ENSG00000167202|ENST00000300584|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MSMS	HCT116MG_D190212_S3	3	541.267822265625	2	541.26727	1080.51999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.366	1	22.367	21.867	22.867	0.00074577								0	0	0	0.84073	1	7843	7843		27.629	4.8925	1				35749	4910	22777	22898	34409	34409					-0.017052234301445424
VGEQLARLAP	10	Unmodified	_VGEQLARLAP_					0	0	0			REV__ENST00000248901.10_1_22:37709601-37709934:+|nuORF	REV__ENST00000248901.10_1_22:37709601-37709934:+|nuORF	MSMS	HCT116MG_D190212_S4	4	527.306640625	2	527.306198	1052.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.102	1	47.733	47.233	48.233	-0.36907								0	0	0	0.93202	1	17804	17804		8.7454	0.15213	1		+		35750	14577	22778	22899	34410	34410					0.07364834225904815
VGEQRRQRE	9	Unmodified	_VGEQRRQRE_					0	0	0		ENST00000302506.7_2_3:48229669-48229807:-|nuORF	ENST00000302506.7_2_3:48229669-48229807:-|nuORF	ENST00000302506.7_2_3:48229669-48229807:-|nuORF	MSMS	HCT116MG_D190212_S2	2	386.87701416015625	3	386.542649	1156.60612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.317	1	11.035	10.535	11.535	-0.28186								0	0	0	0.76991	1	3639	3639		1.1933	0	1				35751	7009	22779	22900	34411	34411					0.03407781195210191
VGERFRKYLRQ	11	Unmodified	_VGERFRKYLRQ_					0	0	0		ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	MSMS	HCT116MG_D190212_S3	3	726.4149169921875	2	726.415134	1450.81572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.534	1	20.568	20.068	21.068	0.034473								0	0	0	0.95636	1	7107	7107		2.9952	0.49676	1				35752	4637	22780	22901	34412	34412					0.10834024148357457
VGERLGRL	8	Unmodified	_VGERLGRL_					0	0	0			REV__ENST00000483405.5_2_16:29911714-29911888:+|nuORF	REV__ENST00000483405.5_2_16:29911714-29911888:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	899.5440673828125	1	899.542126	898.534849	0.62449	0.00056176	0.63425	0.00057053	1.2587	0.0011323	899.5426266367728	50.749	0.61985	50.394	50.109	50.729	-0.35483					15	11	2	0	0	0	0.87576	1	18855	18855		0.79363	0	1	7018000	+		35753	15973	22781	22902	34413	34413					0.08152313228526964
VGERLKNELRL	11	Unmodified	_VGERLKNELRL_					0	0	0			REV__tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1	REV__tr|U7SSX8|U7SSX8_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01539PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	442.9325866699219	3	442.933254	1325.77793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.877	1	52.571	52.071	53.071	-0.30639								0	0	0	0.95636	1	20000	20000		1.2148	0	1		+		35754	17781	22782	22903	34414	34414					0.12807513162874784
VGERRRLQPL	10	Unmodified	_VGERRRLQPL_					0	0	0			REV__ENST00000343110.2_1_1:203444984-203445029:+|nuORF	REV__ENST00000343110.2_1_1:203444984-203445029:+|nuORF	MSMS	HCT116MG_D190212_S4	4	612.3706665039062	2	612.370195	1222.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.195	1	36.811	36.311	37.311	-0.3839								0	0	0	0.94107	1	13640	13640		6.7232	3.1267	1		+		35755	14992	22783	22904	34415	34415					0.12338394539801811
VGERSDYAG	9	Unmodified	_VGERSDYAG_					0	0	0		SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant;SMCHD1|p.K680Nfs*3|2|0.26|ENSG00000101596|chr18:2706442-2706442|A/-|frameshift_variant;SMCHD1|p.G727Rfs*21|1|0.3|ENSG00000101596|chr18:2707832-2707833|-/A|frameshift_variant;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant;SMCHD1|p.D1006Kfs*40|1|0.32|ENSG00000101596|chr18:2729370-2729371|-/AA|frameshift_variant;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	SMCHD1|p.M779Wfs*12|1|0.38|ENSG00000101596|chr18:2718226-2718226|A/-|frameshift_variant;SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	SMCHD1|p.D1006Tfs*39|2|0.32|ENSG00000101596|chr18:2729371-2729371|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	477.2198486328125	2	477.219788	952.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.033	1	17.858	17.358	18.358	-0.17501								0	0	0	0.74436	1	6025	6025		16.942	3.0362	1				35756	1799;18173	22784	22905	34416	34416					-0.05309156901330425
VGESAANN	8	Unmodified	_VGESAANN_					0	0	0			REV__nc|ENSG00000135720|O43237-2|DYNC1LI2	REV__nc|ENSG00000135720|O43237-2|DYNC1LI2	MSMS	HCT116MG_D190212_S4	4	381.1751403808594	2	381.17485	760.335146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.567	1	38.185	37.685	38.685	-0.38163								0	0	0	0.8837	1	14139	14139		2.5775	0.27475	1		+		35757	12103	22785	22906	34417	34417					-0.05460786509911486
VGESERTEW	9	Unmodified	_VGESERTEW_					0	0	0			REV__ENST00000551025.3_2_6:90539725-90539809:+|nuORF	REV__ENST00000551025.3_2_6:90539725-90539809:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	546.7516479492188	2	546.751453	1091.48835	0.51661	0.00028246	-0.50639	-0.00027687	0.010224	5.5902E-06	547.2526870857251	19.698	0.87413	19.504	18.914	19.788	-0.19368					23	16	2	0	0	0	0.41514	1	6733	6733		21.747	1.3321	1	1520700	+		35758	15503	22786	22907	34418	34418					-0.05373216184102603
VGETEGFRLGK	11	Unmodified	_VGETEGFRLGK_					0	0	0		ENST00000374023.7_2_6:34555594-34555657:-|nuORF	ENST00000374023.7_2_6:34555594-34555657:-|nuORF	ENST00000374023.7_2_6:34555594-34555657:-|nuORF	MSMS	HCT116MG_D190212_S3	3	596.6367797851562	2	596.81967	1191.62479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.688	1	22.669	22.169	23.169	-0.018869								0	0	0	0.92983	1	7973	7973		16.149	5.3496	1				35759	7486	22787	22908	34419	34419					0.036638980464203996
VGEVFASDRDL	11	Unmodified	_VGEVFASDRDL_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	604.802978515625	2	604.30131	1206.58807	0.53078	0.00032075	-0.15588	-9.4199E-05	0.37489	0.00022655	604.3012678465743	19.432	0.93694	19.492	18.97	19.907	0.059828					26	17	2	0	0	0	0.34583	1	6647	6647		15.739	3.498	1	3515500			35760	6046	22788	22909	34420	34420					-0.006963985701304409
VGEVFASDRDL	11	Unmodified	_VGEVFASDRDL_					0	0	0		FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant;FAT4|p.K4532Efs*21|1|0.37|ENSG00000196159|chr4:125490410-125490411|-/G|frameshift_variant;FAT4|p.K4532Rfs*38|1|0.19|ENSG00000196159|chr4:125490411-125490411|G/-|frameshift_variant;FAT4|p.E4539Rfs*31|1|0.12|ENSG00000196159|chr4:125490431-125490431|C/-|frameshift_variant;FAT4|p.Q4906Rfs*14|1|0.49|ENSG00000196159|chr4:125491536-125491536|C/-|frameshift_variant;nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.E3388Gfs*4|1|0.35|ENSG00000196159|chr4:125451179-125451179|A/-|frameshift_variant;FAT4|p.T3555Pfs*6|1|0.21|ENSG00000196159|chr4:125451679-125451679|A/-|frameshift_variant;FAT4|p.D3606Sfs*31|1|0.07|ENSG00000196159|chr4:125451831-125451832|-/AGTAAAGG|frameshift_variant;FAT4|p.L3734Yfs*8|2|0.3|ENSG00000196159|chr4:125452212-125452212|T/-|frameshift_variant;FAT4|p.L3734Ffs*22|1|0.27|ENSG00000196159|chr4:125452211-125452212|-/T|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	FAT4|p.K4477Rfs*15|1|0.36|ENSG00000196159|chr4:125490247-125490247|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	604.3014526367188	2	604.30131	1206.58807	1.1322	0.00068419	-0.38482	-0.00023255	0.74737	0.00045164	604.8025702106816	19.759	0.92603	19.565	19.018	19.944	-0.19368					25	17	2	0	0	0	0.72792	1	6594	6594		11.495	0	1	1696100			35761	6046	22788	22909	34421	34421					-0.006963985701304409
VGEVLILIKK	10	Unmodified	_VGEVLILIKK_					0	0	0			REV__ENSG00000172296|ENST00000399002|SPTLC3	REV__ENSG00000172296|ENST00000399002|SPTLC3	MSMS	HCT116MG_D190212_S1	1	371.2542724609375	3	371.253154	1110.73763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.208	1	48.208	47.708	48.708	0								0	0	0	0.97045	1	18337	18337		0.15932	0	1		+		35762	13382	22789	22910	34422	34422					0.18669198510428942
VGFAGGLV	8	Unmodified	_VGFAGGLV_					0	0	0			REV__ENSG00000177370|ENST00000327158|TIMM22	REV__ENSG00000177370|ENST00000327158|TIMM22	MULTI-MSMS	HCT116MG_D190212_S1	1	719.4067993164062	1	719.408652	718.401375	0.71936	0.00051751	-3.2175	-0.0023147	-2.4982	-0.0017972	719.4058132091907	49.415	0.25721	49.415	49.286	49.543	0					7	4	2	0	0	0	0.86388	1	18835	18835		2.8892	0	1	48031000	+		35763	13568	22790	22911	34423	34423					0.030910741227899052
VGFEHFCLLYE	11	Unmodified	_VGFEHFCLLYE_					0	0	0			REV__nc|ENSG00000122966|O14578-3|CIT	REV__nc|ENSG00000122966|O14578-3|CIT	MSMS	HCT116MG_D190212_S4	4	452.8807067871094	3	452.88128	1355.62201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.981	1	13.819	13.319	14.319	-0.16233								0	0	0	0.9619	1	4408	4408		0.094841	0	1		+		35764	11752	22791	22912	34424	34424					-0.04157693402748919
VGFIIIWIPVS	11	Unmodified	_VGFIIIWIPVS_					0	0	0			REV__ENSG00000147003|ENST00000380342|CLTRN	REV__ENSG00000147003|ENST00000380342|CLTRN	MSMS	HCT116MG_D190212_S3	3	415.2547302246094	3	415.253154	1242.73763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.136	1	50.824	50.324	51.324	-0.31166								0	0	0	0.95581	1	19301	19301		1.3296	0.63198	1		+		35765	12500	22792	22913	34425	34425					0.12597198510411545
VGFSPAVP	8	Unmodified	_VGFSPAVP_					0	0	0			REV__ENST00000520639.1_1_5:153873511-153874012:+|nuORF	REV__ENST00000520639.1_1_5:153873511-153874012:+|nuORF	MSMS	HCT116MG_D190212_S4	4	387.21234130859375	2	387.213246	772.41194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.025	1	29.668	29.168	30.168	-0.3571								0	0	0	0.8837	1	10868	10868		6.3541	3.4649	1		+		35766	16230	22793	22914	34426	34426					0.016630567772267568
VGFTEPILHHR	11	Unmodified	_VGFTEPILHHR_					0	0	0			REV__ENST00000466336.5_1_6:31940188-31948320:+|nuORF	REV__ENST00000466336.5_1_6:31940188-31948320:+|nuORF	MSMS	HCT116MG_D190212_S1	1	653.3563232421875	2	653.356754	1304.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.338	1	16.338	15.838	16.838	0								0	0	0	0.95954	1	5492	5492		1.3295	0	1		+		35767	14191	22794	22915	34427	34427					0.05879285928585887
VGFTGTAT	8	Unmodified	_VGFTGTAT_					0	0	0			REV__nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;REV__ENST00000401578.2_1_6:80776237-80776996:-|nuORF	REV__nc|ENSG00000107863|Q5T5U3-3|ARHGAP21	MSMS	HCT116MG_D190212_S4	4	377.1918029785156	2	377.192511	752.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.177	1	30.807	30.307	31.307	-0.37026								0	0	0	0.8837	1	11304	11304		2.5775	0	1		+		35768	9975;15395	22795	22916	34428	34428					-0.01562123982103003
VGFYPVPGP	9	Unmodified	_VGFYPVPGP_					0	0	0		NOTO|p.R114H|1|0.36|ENSG00000214513|chr2:73203007-73203007|G/A|missense_variant;ENSG00000214513|ENST00000398468|NOTO	NOTO|p.R114H|1|0.36|ENSG00000214513|chr2:73203007-73203007|G/A|missense_variant	NOTO|p.R114H|1|0.36|ENSG00000214513|chr2:73203007-73203007|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	466.74951171875	2	466.747453	931.480354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.706	1	40.706	40.206	41.206	0								0	0	0	0.7676	1	15308	15308		9.3474	0.75416	1				35769	6435	22796	22917	34429	34429					0.0118730135708347
VGGAHGLR	8	Unmodified	_VGGAHGLR_					0	0	0		ENST00000464324.5_1_11:64496468-64497660:-|nuORF	ENST00000464324.5_1_11:64496468-64497660:-|nuORF	ENST00000464324.5_1_11:64496468-64497660:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	383.71923828125	2	383.719562	765.42457	-0.10692	-4.1027E-05	-0.13445	-5.1592E-05	-0.24137	-9.2618E-05	383.71948899878305	21.125	0.41464	20.743	20.598	21.013	-0.38288					11	7	2	0	0	0	0.78216	1	7431	7431		13.508	0	1	3645900			35770	8080	22797	22918	34430	34430					0.03247512960126642
VGGALKAP	8	Unmodified	_VGGALKAP_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000559461.1_1_15:40475930-40477631:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MSMS	HCT116MG_D190212_S4	4	356.7196350097656	2	356.721239	711.427924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.175	1	38.794	38.294	39.294	-0.38055								0	0	0	0.8837	1	14385	14385		2.8892	0	1				35771	4306	22798	22919	34431	34431					0.06066763014121079
VGGASRGG	8	Unmodified	_VGGASRGG_					0	0	0		ENST00000399409.7_1_14:24740394-24740445:-|nuORF	ENST00000399409.7_1_14:24740394-24740445:-|nuORF	ENST00000399409.7_1_14:24740394-24740445:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	660.34423828125	1	660.342363	659.335087	0.958	0.00063261	2.109	0.0013926	3.067	0.0020253	660.3436555317298	58.182	0.15557	57.913	57.835	57.991	-0.26932					4	2	2	0	0	0	0.87576	1	22154	22154		0.79363	0	1	13046000			35772	7691	22799	22920	34432	34432					-0.008207417192352295
VGGAVGAE	8	Unmodified	_VGGAVGAE_					0	0	0		ENSG00000131061|ENST00000375200|ZNF341;nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENST00000493497.1_1_20:32376535-32379320:+|nuORF	ENSG00000131061|ENST00000375200|ZNF341	ENSG00000131061|ENST00000375200|ZNF341	MULTI-MSMS	HCT116MG_D190212_S1	1	659.33642578125	1	659.335881	658.328604	0.72254	0.0004764	0.00089031	5.8701E-07	0.72343	0.00047698	659.3357509448108	22.342	0.20873	22.342	22.22	22.428	0					5	3	2	0	0	0	0.64761	1	7919	7919		28.173	1.832	1	4657400			35773	3125	22800	22921	34433	34433					-0.014226796706225286
VGGCFKKP	8	Unmodified	_VGGCFKKP_					0	0	0			REV__ENST00000448973.6_1_16:685482-685995:-|nuORF	REV__ENST00000448973.6_1_16:685482-685995:-|nuORF	MSMS	HCT116MG_D190212_S4	4	418.2285461425781	2	418.228374	834.442194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.357	1	26.056	25.556	26.556	-0.30087								0	0	0	0.8837	1	9385	9385		2.5775	0.27475	1		+		35774	15697	22801	22922	34434	34434					0.018350921707792622
VGGDDHVC	8	Unmodified	_VGGDDHVC_					0	0	0		ENST00000532402.5_1_11:62392300-62392474:-|nuORF	ENST00000532402.5_1_11:62392300-62392474:-|nuORF	ENST00000532402.5_1_11:62392300-62392474:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	401.1636962890625	2	401.163428	800.312302	-0.048763	-1.9562E-05	0.73838	0.00029621	0.68962	0.00027665	401.1636168697962	34.226	0.26081	34.226	34.076	34.337	0					6	4	2	0	0	0	0.81821	1	12715	12715		9.3474	3.587	1	5097500			35775	8635	22802	22923	34435	34435					-0.0958412889903002
VGGEGCCC	8	Unmodified	_VGGEGCCC_					0	0	0			REV__ENST00000505490.2_1_17:79845733-79845814:-|nuORF	REV__ENST00000505490.2_1_17:79845733-79845814:-|nuORF	MSMS	HCT116MG_D190212_S1	1	364.1139221191406	2	364.114035	726.213516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.528	1	25.528	25.028	26.028	0								0	0	0	0.8837	1	9187	9187		0.79363	0.79363	1		+		35776	16139	22803	22924	34436	34436					-0.160541914599321
VGGELIRRWIP	11	Unmodified	_VGGELIRRWIP_					0	0	0			REV__ENST00000239830.8_1_12:510843-518553:+|nuORF	REV__ENST00000239830.8_1_12:510843-518553:+|nuORF	MSMS	HCT116MG_D190212_S4	4	648.3802490234375	2	648.382771	1294.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.415	1	49.053	48.553	49.553	-0.36213								0	0	0	0.95925	1	18328	18328		1.4819	0.15237	1		+		35777	14561	22804	22925	34437	34437					0.11540449342373904
VGGFFKTYP	9	Unmodified	_VGGFFKTYP_					0	0	0			REV__B4GALT5|p.E270K|1|0.18|ENSG00000158470|chr20:49639787-49639787|C/T|missense_variant	REV__B4GALT5|p.E270K|1|0.18|ENSG00000158470|chr20:49639787-49639787|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	508.26495361328125	2	508.26601	1014.51747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.559	1	36.173	35.673	36.673	-0.38528								0	0	0	0.71969	1	13383	13383		18.135	1.1927	1		+		35778	10029	22805	22926	34438	34438					0.010789729028488182
VGGGAEQGE	9	Unmodified	_VGGGAEQGE_					0	0	0			REV__F2R|p.F104Cfs*54|1|0.35|ENSG00000181104|chr5:76732535-76732536|TT/-|frameshift_variant	REV__F2R|p.F104Cfs*54|1|0.35|ENSG00000181104|chr5:76732535-76732536|TT/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	402.179443359375	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.665	1	10.705	10.205	11.205	0.039975								0	0	0	0.76913	1	3239	3239		3.9444	1.3669	1		+		35779	16803	22806	22927	34439	34439					-0.06336803855458584
VGGGAGAL	8	Unmodified	_VGGGAGAL_					0	0	0		ENST00000270357.9_2_2:241517616-241518690:+|nuORF	ENST00000270357.9_2_2:241517616-241518690:+|nuORF	ENST00000270357.9_2_2:241517616-241518690:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	601.3312377929688	1	601.330402	600.323125	0.37003	0.00022251	0.99465	0.00059812	1.3647	0.00082062	601.3311065615679	36.87	0.31137	36.87	36.731	37.042	0					7	5	2	0	0	0	0.84415	1	13782	13782		6.3541	0	1	8848000			35780	6919	22807	22928	34440	34440					0.00697641537567506
VGGGFNGA	8	Unmodified	_VGGGFNGA_					0	0	0			REV__ENST00000480427.1_1_12:125420028-125420310:-|nuORF	REV__ENST00000480427.1_1_12:125420028-125420310:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	678.3212280273438	1	678.320565	677.313289	0.90093	0.00061112	-0.018552	-1.2584E-05	0.88238	0.00059854	678.3204404748071	21.745	0.36804	21.763	21.535	21.903	0.018446					10	6	2	0	0	0	0.84759	1	7591	7591		5.7604	0	1	2898100	+		35781	15946	22808	22929	34441	34441					-0.03827546467812226
VGGGGGAGNG	10	Unmodified	_VGGGGGAGNG_					0	0	0			REV__ENSG00000106415|ENST00000223145|GLCCI1	REV__ENSG00000106415|ENST00000223145|GLCCI1	MULTI-MSMS	HCT116MG_D190212_S2	2	702.3173828125	1	702.316542	701.309266	0.88152	0.00061911	0.37987	0.00026679	1.2614	0.0008859	702.3166450906275	34.997	0.31079	34.839	34.761	35.072	-0.15834					12	5	3	0	0	0	0.89248	1	13061	13061		0.45834	0	1	111810000	+		35782	11296	22809	22930	34442	34442					-0.053336359615173023
VGGGGGGKI	9	Unmodified	_VGGGGGGKI_					0	0	0		NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant;nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153;NUP153|p.S359Ffs*14|1|0.09|ENSG00000124789|chr6:17665380-17665381|-/TAGATAAGAAG|frameshift_variant;NUP153|p.N411Ifs*2|1|0.17|ENSG00000124789|chr6:17662054-17662054|T/-|frameshift_variant;NUP153|p.T480Qfs*8|1|0.1|ENSG00000124789|chr6:17649257-17649258|GT/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	NUP153|p.E1073Kfs*44|1|0.07|ENSG00000124789|chr6:17628983-17628983|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	351.2019348144531	2	351.20067	700.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.485	1	27.485	26.985	27.985	0								0	0	0	0.76967	1	9975	9975		2.0598	1.2661	1				35783	2866	22810	22931	34443	34443					0.024610019746660328
VGGGGHGR	8	Unmodified	_VGGGGHGR_					0	0	0		ENST00000292363.9_1_19:651790-663233:-|nuORF	ENST00000292363.9_1_19:651790-663233:-|nuORF	ENST00000292363.9_1_19:651790-663233:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	696.438232421875	1	696.353597	695.34632	0.88655	0.00061735	1.637	0.0011399	2.5235	0.0017573	696.3546044919175	56.375	0.42081	56.069	55.884	56.305	-0.30626					10	7	2	0	0	0	0.33409	1	21207	21207		0.69038	0.69038	1	3073400			35784	6961	22811	22932	34444	34444					-0.013539196250917485
VGGGSFTY	8	Unmodified	_VGGGSFTY_					0	0	0			REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	REV__ADGRG4|p.P2406Lfs*10|1|0.85|ENSG00000156920|chrX:136361525-136361525|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	394.1852111816406	2	394.184686	786.354819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.719	1	28.379	27.879	28.879	-0.34059								0	0	0	0.8837	1	10340	10340		2.5775	0	1		+		35785	9872	22812	22933	34445	34445					-0.04690410499154041
VGGGWISHL	9	Unmodified	_VGGGWISHL_					0	0	0		ENST00000359451.6_1_6:110501026-110501203:-|nuORF;ENST00000392586.5_1_6:110499922-110501203:-|nuORF	ENST00000359451.6_1_6:110501026-110501203:-|nuORF	ENST00000359451.6_1_6:110501026-110501203:-|nuORF	MSMS	HCT116MG_D190212_S4	4	463.24615478515625	2	463.248152	924.481751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.692	1	16.525	16.025	17.025	-0.16664								0	0	0	0.76694	1	5483	5483		11.64	0.84079	1				35786	7337	22813	22934	34446	34446					0.016489354458371963
VGGHAAEY	8	Unmodified	_VGGHAAEY_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MSMS	HCT116MG_D190212_S2	2	402.1874694824219	2	402.18776	802.360967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.408	1	20.029	19.529	20.529	-0.37949								0	0	0	0.8837	1	7132	7132		10.183	0	1			+	35787	545	22814	22935	34447	34447					-0.04811892267628082
VGGILVIP	8	Unmodified	_VGGILVIP_					0	0	0		SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant;ENSG00000144671|ENST00000448498|SLC22A14	SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant	SLC22A14|p.T508Hfs*73|1|0.1|ENSG00000144671|chr3:38315696-38315697|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	767.503173828125	1	767.502552	766.495276	0.98612	0.00075685	0.0090183	6.9216E-06	0.99513	0.00076377	767.502431556884	55.385	0.30628	55.199	55.021	55.327	-0.18565					8	5	2	0	0	0	0.59885	1	21364	21364		32.454	0	1	24525000			35788	3875	22815	22936	34448	34448					0.10268793225077388
VGGKAKSP	8	Unmodified	_VGGKAKSP_					0	0	0		nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A	nc|ENSG00000172661|Q9Y4E1-3|WASHC2C	nc|ENSG00000172661|Q9Y4E1-3|WASHC2C	MSMS	HCT116MG_D190212_S3	3	372.2223205566406	2	372.224146	742.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.765	1	23.703	23.203	24.203	-0.061449								0	0	0	0.8837	1	8407	8407		2.8892	0.31174	1				35789	5255	22816	22937	34449	34449					0.052218615258084355
VGGKVQLP	8	Unmodified	_VGGKVQLP_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MSMS	HCT116MG_D190212_S4	4	399.2460632324219	2	399.247621	796.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.407	1	44.033	43.533	44.533	-0.37373								0	0	0	0.8837	1	16359	16359		2.8892	0	1		+		35790	11772	22817	22938	34450	34450					0.07430721076946156
VGGLEPGRKY	10	Unmodified	_VGGLEPGRKY_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MSMS	HCT116MG_D190212_S1	1	538.2987060546875	2	538.298373	1074.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.841	1	52.841	52.341	53.341	0								0	0	0	0.96291	1	20221	20221		1.8442	0	1				35791	5012	22818	22939	34451	34451					0.047885477088584594
VGGLGLFLFL	10	Unmodified	_VGGLGLFLFL_					0	0	0			REV__OR2W3|p.L284Sfs*14|2|0.22|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	REV__OR2W3|p.L284Sfs*14|2|0.22|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	518.3170166015625	2	518.315503	1034.61645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.871	1	44.498	43.998	44.998	-0.37326								0	0	0	0.96291	1	16535	16535		1.8442	0	1		+		35792	14342	22819	22940	34452	34452					0.10052995867727077
VGGLKKVV	8	Unmodified	_VGGLKKVV_					0	0	0			REV__ENST00000379520.7_1_2:30371213-30371246:+|nuORF	REV__ENST00000379520.7_1_2:30371213-30371246:+|nuORF	MSMS	HCT116MG_D190212_S1	1	400.2725524902344	2	400.273638	798.532724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.31	1	55.31	54.81	55.81	0								0	0	0	0.8837	1	21236	21236		0.79363	0	1		+		35793	15259	22820	22941	34453	34453					0.12539884490706754
VGGLKVNI	8	Unmodified	_VGGLKVNI_					0	0	0			REV__AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	REV__AGO2|p.R688Pfs*2|1|0.33|ENSG00000123908|chr8:140539428-140539429|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	400.2537841796875	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.928	1	53.739	53.239	54.239	-0.1894								0	0	0	0.8837	1	20750	20750		2.8892	0	1		+		35794	9886	22821	22942	34454	34454					0.08903007593983148
VGGLQTKI	8	Unmodified	_VGGLQTKI_					0	0	0		tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	408.2510681152344	2	408.252903	814.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.184	1	40.184	39.684	40.684	0								0	0	0	0.8837	1	15096	15096		2.8892	0	1				35795	18573	22822	22943	34455	34455					0.07658703731362948
VGGLQTKI	8	Unmodified	_VGGLQTKI_					0	0	0		tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	408.2515869140625	2	408.252903	814.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.453	1	41.453	40.953	41.953	0								0	0	0	0.8837	1	15609	15609		0.79363	0	1				35796	18573	22822	22943	34456	34456					0.07658703731362948
VGGLQTKI	8	Unmodified	_VGGLQTKI_					0	0	0		tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	408.25177001953125	2	408.252903	814.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.658	1	41.282	40.782	41.782	-0.37637								0	0	0	0.8837	1	15286	15286		2.8892	0	1				35797	18573	22822	22943	34457	34457					0.07658703731362948
VGGLRRAT	8	Unmodified	_VGGLRRAT_					0	0	0			REV__ENST00000591832.1_1_X:47518288-47519317:+|nuORF	REV__ENST00000591832.1_1_X:47518288-47519317:+|nuORF	MSMS	HCT116MG_D190212_S1	1	415.25390625	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.2	1	37.2	36.7	37.7	0								0	0	0	0.8837	1	13891	13891		2.8892	0	1		+		35798	16686	22823	22944	34458	34458					0.07187757539986706
VGGLTRKT	8	Unmodified	_VGGLTRKT_					0	0	0			REV__nc|ENSG00000163291|Q6TCH7-2|PAQR3	REV__nc|ENSG00000163291|Q6TCH7-2|PAQR3	MSMS	HCT116MG_D190212_S4	4	416.2568359375	2	416.255977	830.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.305	1	37.923	37.423	38.423	-0.38283								0	0	0	0.8837	1	14034	14034		2.8892	0	1		+		35799	17189	22824	22945	34459	34459					0.07537221962900276
VGGNNGGR	8	Unmodified	_VGGNNGGR_					0	0	0			REV__nc|ENSG00000151079|P17658|KCNA6	REV__nc|ENSG00000151079|P17658|KCNA6	MULTI-MSMS	HCT116MG_D190212_S3	3	730.35986328125	1	730.359076	729.351799	0.71646	0.00052328	0.016862	1.2315E-05	0.73333	0.00053559	730.3588248750581	44.456	0.6452	44.149	43.708	44.353	-0.30759					24	13	2	0	0	0	0.86564	1	16600	16600		2.5775	0	1	46653000	+		35800	17162	22825	22946	34460	34460					-0.023702408332837877
VGGNNGGR	8	Unmodified	_VGGNNGGR_					0	0	0			REV__nc|ENSG00000151079|P17658|KCNA6	REV__nc|ENSG00000151079|P17658|KCNA6	MULTI-MSMS	HCT116MG_D190212_S4	4	730.35791015625	1	730.359076	729.351799	0.82188	0.00060027	0.50657	0.00036998	1.3284	0.00097024	730.3589768894219	44.516	0.89271	44.143	43.468	44.361	-0.37329					28	20	3	0	0	0	0.87576	1	16356	16356		0.79363	0	1	33555000	+		35801	17162	22825	22946	34461	34461					-0.023702408332837877
VGGNPFKL	8	Unmodified	_VGGNPFKL_					0	0	0		PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant;PCDH7|p.D918Ifs*209|1|0.36|ENSG00000169851|chr4:30724168-30724168|A/-|frameshift_variant;nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;PCDH7|p.H835Tfs*53|1|0.16|ENSG00000169851|chr4:31142537-31142537|C/-|frameshift_variant;ENSG00000169851|ENST00000695919|PCDH7	PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant	PCDH7|p.K1017Nfs*110|1|0.13|ENSG00000169851|chr4:30724467-30724467|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	416.2391662597656	2	416.239796	830.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.289	1	25.289	24.789	25.789	0								0	0	0	0.8837	1	9090	9090		2.5775	0	1				35802	5094	22826	22947	34462	34462					0.04302434559906487
VGGPAAHP	8	Unmodified	_VGGPAAHP_					0	0	0		nc|ENSG00000220201|P0C6A0-1|ZGLP1;ENSG00000220201|ENST00000707000|ZGLP1	nc|ENSG00000220201|P0C6A0-1|ZGLP1	nc|ENSG00000220201|P0C6A0-1|ZGLP1	MULTI-MSMS	HCT116MG_D190212_S1	1	353.1874084472656	2	353.187563	704.360573	-0.078389	-2.7686E-05	-0.11151	-3.9384E-05	-0.1899	-6.707E-05	353.1874471797109	16.603	0.26022	16.603	16.525	16.785	0					5	4	2	0	0	0	0.87576	1	5625	5625		0.79363	0	1	3275900			35803	6464	22827	22948	34463	34463					-0.0034326719681985196
VGGPADYH	8	Unmodified	_VGGPADYH_					0	0	0		nc|ENSG00000175040|Q9Y4C5-2|CHST2;ENSG00000175040|ENST00000309575|CHST2	nc|ENSG00000175040|Q9Y4C5-2|CHST2	nc|ENSG00000175040|Q9Y4C5-2|CHST2	MSMS	HCT116MG_D190212_S3	3	408.18780517578125	2	408.18776	814.360967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.613	1	26.463	25.963	26.963	-0.14924								0	0	0	0.8837	1	9555	9555		2.8892	0	1				35804	5358	22828	22949	34464	34464					-0.05363892267632764
VGGPDFHS	8	Unmodified	_VGGPDFHS_					0	0	0		ENST00000377735.7_1_19:46286319-46286718:-|nuORF	ENST00000377735.7_1_19:46286319-46286718:-|nuORF	ENST00000377735.7_1_19:46286319-46286718:-|nuORF	MSMS	HCT116MG_D190212_S4	4	408.18658447265625	2	408.18776	814.360967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.575	1	24.306	23.806	24.806	-0.26881								0	0	0	0.8837	1	8666	8666		2.5775	0	1				35805	7531	22829	22950	34465	34465					-0.05363892267621395
VGGPESPV	8	Unmodified	_VGGPESPV_					0	0	0			REV__nc|ENSG00000111679|P29350-2|PTPN6	REV__nc|ENSG00000111679|P29350-2|PTPN6	MSMS	HCT116MG_D190212_S3	3	371.10107421875	2	371.192511	740.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.899	1	26.729	26.229	27.229	-0.16933								0	0	0	0.8837	1	9671	9671		2.8892	0	1		+		35806	11434	22830	22951	34466	34466					-0.010101239820869523
VGGPFCLQ	8	Unmodified	_VGGPFCLQ_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MSMS	HCT116MG_D190212_S1	1	410.7032470703125	2	410.704731	819.39491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.773	1	39.773	39.273	40.273	0								0	0	0	0.8837	1	14930	14930		5.7604	2.8712	1		+		35807	11246	22831	22952	34467	34467					-0.022011871002291628
VGGPGWVHAQP	11	Unmodified	_VGGPGWVHAQP_					0	0	0			REV__ENST00000509460.2_1_22:25853295-25915989:+|nuORF	REV__ENST00000509460.2_1_22:25853295-25915989:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	552.8763427734375	2	552.78289	1103.55123	0.37812	0.00020902	3.5708	0.0019739	3.9489	0.0021829	552.784877304402	35.137	0.3626	34.979	34.709	35.072	-0.15834					8	6	2	0	0	0	0.73177	1	13013	13013		10.074	0.6908	1	32735000	+		35808	16168	22832	22953	34468	34468					0.0035939439460435096
VGGPNRGA	8	Unmodified	_VGGPNRGA_					0	0	0			REV__PTPRN|p.S677Pfs*18|1|0.2|ENSG00000054356|chr2:219297293-219297293|C/-|frameshift_variant	REV__PTPRN|p.S677Pfs*18|1|0.2|ENSG00000054356|chr2:219297293-219297293|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	364.1963195800781	2	364.195919	726.377286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.045	1	29.805	29.305	30.305	-0.23981								0	0	0	0.8837	1	10935	10935		5.7604	0	1		+		35809	10633	22833	22954	34469	34469					0.0031523368913894956
VGGPTDEREW	10	Unmodified	_VGGPTDEREW_					0	0	0			REV__ENST00000341853.5_1_15:100333036-100340296:-|nuORF	REV__ENST00000341853.5_1_15:100333036-100340296:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	573.3373413085938	2	573.264727	1144.5149	0.51678	0.00029625	-0.0014633	-8.3885E-07	0.51532	0.00029541	573.2647448047901	30.293	0.76335	30.043	29.383	30.147	-0.24946					22	15	2	0	0	0	0.84919	1	11061	11061		7.9102	0.3012	1	11086000	+		35810	14977	22834	22955	34470	34470					-0.05157527292749364
VGGQENRLQM	10	Unmodified	_VGGQENRLQM_					0	0	0			REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	REV__nc|ENSG00000124215|Q8IXH8-1|CDH26	MULTI-MSMS	HCT116MG_D190212_S2	2	377.8573913574219	3	377.857357	1130.55024	-0.24768	-9.3587E-05	0.51873	0.00019601	0.27105	0.00010242	377.8571985727602	26.683	0.26074	26.323	26.182	26.443	-0.35962					10	4	3	0	0	0	0.67188	1	9685	9685		14.957	4.6419	1	12937000	+		35811	17116	22835	22956	34471	34471					-0.009811880365987236
VGGQLWHL	8	Unmodified	_VGGQLWHL_					0	0	0		ENST00000429989.7_1_10:82280023-82280299:+|nuORF	ENST00000429989.7_1_10:82280023-82280299:+|nuORF	ENST00000429989.7_1_10:82280023-82280299:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	455.24847412109375	2	455.250695	908.486836	0.14545	6.6215E-05	-1.9854	-0.00090386	-1.84	-0.00083764	455.2486119670116	34.417	1.1459	34.417	33.763	34.909	0					34	21	4	0	0	0	0.84759	1	12688	12688		5.7604	0	1	26465000			35812	7844	22836	22957	34472	34472					0.028932393084687646
VGGQPNVQSP	10	Unmodified	_VGGQPNVQSP_					0	0	0			REV__tr|U7T290|U7T290_FUSNULargeribosomalsubunitproteinuL24OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplXPE=3SV=1	REV__tr|U7T290|U7T290_FUSNULargeribosomalsubunitproteinuL24OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplXPE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	491.2173767089844	2	491.751256	981.487959	0.4366	0.0002147	0.17145	8.431E-05	0.60805	0.00029901	491.75134115477954	24.268	0.20966	24.268	24.15	24.36	0					5	3	2	0	0	0	0.30812	1	8710	8710		3.9444	0	1	7642100	+		35813	17918	22837	22958	34473	34473					-0.0035259111327832215
VGGRIAIIVVV	11	Unmodified	_VGGRIAIIVVV_					0	0	0		nc|ENSG00000141127|O60256-3|PRPSAP2	nc|ENSG00000141127|O60256-3|PRPSAP2	nc|ENSG00000141127|O60256-3|PRPSAP2	MSMS	HCT116MG_D190212_S4	4	548.3638305664062	2	548.366059	1094.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.4	1	46.029	45.529	46.529	-0.37134								0	0	0	0.95925	1	17130	17130		1.4819	0	1				35814	9480	22838	22959	34474	34474					0.17399447570460325
VGGRKTRRLL	10	Unmodified	_VGGRKTRRLL_					0	0	0			REV__ENST00000597244.1_1_19:16688850-16689066:-|nuORF	REV__ENST00000597244.1_1_19:16688850-16689066:-|nuORF	MSMS	HCT116MG_D190212_S4	4	578.37451171875	2	578.375281	1154.73601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.569	1	39.189	38.689	39.689	-0.38055								0	0	0	0.96291	1	14541	14541		1.8442	1.2427	1		+		35815	16729	22839	22960	34475	34475					0.16483002265044888
VGGRLLALQGR	11	Unmodified	_VGGRLLALQGR_					0	0	0		SLC17A7|p.I357Nfs*105|1|0.22|ENSG00000104888|chr19:49432599-49432600|-/T|frameshift_variant	SLC17A7|p.I357Nfs*105|1|0.22|ENSG00000104888|chr19:49432599-49432600|-/T|frameshift_variant	SLC17A7|p.I357Nfs*105|1|0.22|ENSG00000104888|chr19:49432599-49432600|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	570.3544311523438	2	570.354014	1138.69348	0.38525	0.00021973	0.12301	7.0158E-05	0.50826	0.00028989	570.3541984271376	36.124	0.20862	36.124	35.993	36.202	0					6	3	2	0	0	0	0.70073	1	13485	13485		21.537	1.1224	1	10946000			35816	18156	22840	22961	34476	34476					0.12967607136806691
VGGRLRRHKPK	11	Unmodified	_VGGRLRRHKPK_					0	0	0			REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MSMS	HCT116MG_D190212_S1	1	652.411376953125	2	652.412729	1302.8109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.471	1	46.471	45.971	46.971	0								0	0	0	0.95954	1	17632	17632		1.3295	0	1		+		35817	14425	22841	22962	34477	34477					0.1716118479623674
VGGSFSVY	8	Unmodified	_VGGSFSVY_					0	0	0			REV__tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1	REV__tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	408.20037841796875	2	408.200336	814.386119	-0.0099842	-4.0755E-06	0.10108	4.126E-05	0.091094	3.7185E-05	408.20029225347236	24.385	0.36513	24.004	23.822	24.187	-0.38003					14	6	4	0	0	0	0.50777	1	8736	8736		40.449	21.01	1	63142000	+		35818	17912	22842	22963	34478	34478					-0.028498374650439473
VGGSFSVY	8	Unmodified	_VGGSFSVY_					0	0	0			REV__tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1	REV__tr|U7T226|U7T226_FUSNUEthanolamineutilizationproteinEutAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00820PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	815.39453125	1	815.393396	814.386119	1.0315	0.0008411	0.067149	5.4753E-05	1.0987	0.00089585	815.39340462756	24.385	0.31278	24.004	23.822	24.135	-0.38003					10	5	3	0	0	0	0.40466	1	8740	8740		49.669	23.328	1	42765000	+		35819	17912	22842	22963	34479	34479					-0.028498374650439473
VGGSLEDEFDL	11	Unmodified	_VGGSLEDEFDL_					0	0	0		ENSG00000244617|ENST00000320256|ASPRV1;nc|ENSG00000244617|Q53RT3|ASPRV1	ENSG00000244617|ENST00000320256|ASPRV1	ENSG00000244617|ENST00000320256|ASPRV1	MSMS	HCT116MG_D190212_S1	1	394.185302734375	3	394.183793	1179.52955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.451	1	28.451	27.951	28.951	0								0	0	0	0.95581	1	10364	10364		2.8433	1.251	1				35820	6567	22843	22964	34480	34480					-0.053034999352803425
VGGSPACW	8	Unmodified	_VGGSPACW_					0	0	0		SEMA6B|p.R276Afs*11|3|0.39|ENSG00000167680|chr19:4552585-4552585|G/-|frameshift_variant	SEMA6B|p.R276Afs*11|3|0.39|ENSG00000167680|chr19:4552585-4552585|G/-|frameshift_variant	SEMA6B|p.R276Afs*11|3|0.39|ENSG00000167680|chr19:4552585-4552585|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	389.21697998046875	2	388.673431	775.33231	0.097373	3.7846E-05	-0.16164	-6.2826E-05	-0.06427	-2.498E-05	388.6733085601458	41.941	0.20808	41.873	41.756	41.964	-0.068199					5	3	2	0	0	0	0.32917	1	15896	15896		2.8892	2.0956	1	5909000			35821	18141	22844	22965	34481	34481					-0.06434333168419926
VGGVFPPA	8	Unmodified	_VGGVFPPA_					0	0	0		ENST00000602172.1_1_19:48761247-48761370:+|nuORF	ENST00000602172.1_1_19:48761247-48761370:+|nuORF	ENST00000602172.1_1_19:48761247-48761370:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	743.4090576171875	1	743.408652	742.401375	1.0285	0.00076457	0.38026	0.00028269	1.4087	0.0010473	743.4090177274875	33.698	0.85337	33.314	32.976	33.829	-0.38426					23	18	2	0	0	0	0.75115	1	12331	12331		17.087	5.9721	1	3169200			35822	9094	22845	22966	34482	34482					0.019870741228032784
VGGYDSDG	8	Unmodified	_VGGYDSDG_					0	0	0			REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	MSMS	HCT116MG_D190212_S1	1	385.1531677246094	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6178	1	9.6178	9.1178	10.118	0								0	0	0	0.8837	1	2919	2919		0.79363	0	1		+		35823	13253	22846	22967	34483	34483					-0.1008018163813631
VGGYDSDG	8	Unmodified	_VGGYDSDG_					0	0	0			REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	MSMS	HCT116MG_D190212_S2	2	385.1531066894531	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.256	1	10.974	10.474	11.474	-0.28186								0	0	0	0.8837	1	3616	3616		0.79363	0	1		+		35824	13253	22846	22967	34484	34484					-0.1008018163813631
VGGYDSDG	8	Unmodified	_VGGYDSDG_					0	0	0			REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	MSMS	HCT116MG_D190212_S3	3	385.1529541015625	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.296	1	14.376	13.876	14.876	0.079683								0	0	0	0.8837	1	4591	4591		0.79363	0	1		+		35825	13253	22846	22967	34485	34485					-0.1008018163813631
VGGYDSDG	8	Unmodified	_VGGYDSDG_					0	0	0			REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	MSMS	HCT116MG_D190212_S4	4	385.1531677246094	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.245	1	11.064	10.564	11.564	-0.18135								0	0	0	0.8837	1	3469	3469		0.79363	0	1		+		35826	13253	22846	22967	34486	34486					-0.1008018163813631
VGHGSPVP	8	Unmodified	_VGHGSPVP_					0	0	0		ENST00000540929.5_1_12:2926443-2927078:+|nuORF	ENST00000540929.5_1_12:2926443-2927078:+|nuORF	ENST00000540929.5_1_12:2926443-2927078:+|nuORF	MSMS	HCT116MG_D190212_S4	4	375.2010192871094	2	375.20067	748.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.494	1	38.112	37.612	38.612	-0.38163								0	0	0	0.8837	1	14110	14110		6.3541	0.59368	1				35827	8692	22847	22968	34487	34487					0.002530019746700418
VGHPPKRT	8	Unmodified	_VGHPPKRT_					0	0	0			REV__ENST00000607286.5_1_5:476364-477927:+|nuORF	REV__ENST00000607286.5_1_5:476364-477927:+|nuORF	MSMS	HCT116MG_D190212_S3	3	446.2601013183594	2	446.261594	890.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.189	1	35.888	35.388	36.388	-0.30042								0	0	0	0.8837	1	13363	13363		2.3027	0	1		+		35828	16780	22848	22969	34488	34488					0.05900044057023024
VGHPQGKG	8	Unmodified	_VGHPQGKG_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3;DLGAP3|p.P280Lfs*20|1|0.38|ENSG00000116544|chr1:34904545-34904545|G/-|frameshift_variant;DLGAP3|p.R116Afs*184|2|0.49|ENSG00000116544|chr1:34905038-34905038|G/-|frameshift_variant	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	MSMS	HCT116MG_D190212_S4	4	390.2096862792969	2	390.211569	778.408586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.491	1	38.11	37.61	38.61	-0.38163								0	0	0	0.8837	1	14109	14109		9.3474	0.75416	1				35829	686	22849	22970	34489	34489					0.010518067232396788
VGICSMAK	8	Unmodified	_VGICSMAK_					0	0	0		PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant;PPIP5K2|p.V1179Yfs*3|2|0.15|ENSG00000145725|chr5:103194934-103194934|A/-|frameshift_variant;nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	404.7064514160156	2	404.706417	807.398281	-0.03913	-1.5836E-05	0.053113	2.1495E-05	0.013983	5.659E-06	404.7063875528486	23.915	0.20914	23.915	23.784	23.993	0					6	3	2	0	0	0	0.62424	1	8541	8541		30.225	2.0516	1	16347000			35830	3919	22850	22971	34490	34490					-0.01312260317865821
VGICSMAK	8	Unmodified	_VGICSMAK_					0	0	0		PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant;PPIP5K2|p.V1179Yfs*3|2|0.15|ENSG00000145725|chr5:103194934-103194934|A/-|frameshift_variant;nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	PPIP5K2|p.L906Cfs*40|1|0.19|ENSG00000145725|chr5:103177941-103177941|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	404.7317810058594	2	404.706417	807.398281	0.040078	1.622E-05	0.42303	0.0001712	0.46311	0.00018742	404.7066147764031	24.385	0.26052	24.004	23.874	24.135	-0.38003					6	4	2	0	0	0	0.28869	1	8739	8739		18.135	3.5533	1	11252000			35831	3919	22850	22971	34491	34491					-0.01312260317865821
VGIFKKGF	8	Unmodified	_VGIFKKGF_					0	0	0			REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2	REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2	MSMS	HCT116MG_D190212_S1	1	448.27520751953125	2	448.273638	894.532724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.195	1	29.195	28.695	29.695	0								0	0	0	0.8837	1	10661	10661		0.79363	0	1		+		35832	12078	22851	22972	34492	34492					0.08123884490714772
VGIFLFFIL	9	Unmodified	_VGIFLFFIL_					0	0	0			REV__nc|ENSG00000151079|P17658|KCNA6	REV__nc|ENSG00000151079|P17658|KCNA6	MULTI-SECPEP	HCT116MG_D190212_S3	3	356.21783447265625	3	356.887923	1067.64194	0.082583	2.9473E-05	-1.3999	-0.0004996	-1.3173	-0.00047012	357.2210497285215	53.108	0.20912	52.805	52.669	52.878	-0.30305					5	3	2	0	0	0	0.2702	1	20119	20119		0.26902	0	1	517480	+		35833	17162	22852	22973	34493	34493					0.11082470390192611
VGIGNLQRT	9	Unmodified	_VGIGNLQRT_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4;PKP4|p.S458G|1|0.36|ENSG00000144283|chr2:158634099-158634099|A/G|missense_variant	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MSMS	HCT116MG_D190212_S3	3	479.2774963378906	2	479.277441	956.540328	0.43314	0.0002076	-0.29834	-0.00014299	0.1348	6.4609E-05	479.27719358314295	46.282	0.69543	45.97	45.848	46.543	-0.31237					20	16	2	0	0	0	0.74258	1	17438	17438		2.3027	0	1	4632800			35834	3856	22853	22974	34494	34494					0.06031992020314192
VGIGNLQRT	9	Unmodified	_VGIGNLQRT_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4;PKP4|p.S458G|1|0.36|ENSG00000144283|chr2:158634099-158634099|A/G|missense_variant	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	479.277441	956.540328	0.28027	0.00013433	0.030661	1.4695E-05	0.31093	0.00014902	479.27731022138573	46.259	0.30992	46.259	46.13	46.44	0	0.14461	0.00015586	NaN	2.3027	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15515000			35835	3856	22853	22974							0.06031992020314192
VGIGNLQRT	9	Unmodified	_VGIGNLQRT_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4;PKP4|p.S458G|1|0.36|ENSG00000144283|chr2:158634099-158634099|A/G|missense_variant	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	479.277441	956.540328	0.43314	0.0002076	-0.29834	-0.00014299	0.1348	6.4609E-05	479.27719358314295	46.282	0.69543	45.97	45.848	46.543	-0.31237	-0.14461	-0.0001595	NaN	2.3027	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4632800			35836	3856	22853	22974							0.06031992020314192
VGIGRPGR	8	Unmodified	_VGIGRPGR_					0	0	0		ENST00000592881.1_1_19:56146387-56146453:+|nuORF	ENST00000592881.1_1_19:56146387-56146453:+|nuORF	ENST00000592881.1_1_19:56146387-56146453:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	406.24810791015625	2	406.248486	810.48242	0.31714	0.00012884	-0.077844	-3.1624E-05	0.23929	9.7212E-05	406.24836249735694	48.642	3.0778	48.326	47.775	50.853	-0.31596					116	58	4	0	0	0	0.86388	1	18784	18784		2.8892	0	1	648920000			35837	9044	22854	22975	34495	34495					0.06959774885558545
VGIGTKLMV	9	Unmodified	_VGIGTKLMV_					0	0	0			REV__NETO2|p.N261S|1|0.07|ENSG00000171208|chr16:47109584-47109584|T/C|missense_variant	REV__NETO2|p.N261S|1|0.07|ENSG00000171208|chr16:47109584-47109584|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	459.2806701660156	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.389	1	54.093	53.593	54.593	-0.29587								0	0	0	0.7696	1	20608	20608		2.3027	0	1		+		35838	13336	22855	22976	34496	34496					0.07996490064874706
VGIIIWYAP	9	Unmodified	_VGIIIWYAP_					0	0	0		SLC1A6|p.M377Hfs*66|1|0.13|ENSG00000105143|chr19:14956517-14956518|-/C|frameshift_variant;ENSG00000105143|ENST00000594383|SLC1A6	SLC1A6|p.M377Hfs*66|1|0.13|ENSG00000105143|chr19:14956517-14956518|-/C|frameshift_variant	SLC1A6|p.M377Hfs*66|1|0.13|ENSG00000105143|chr19:14956517-14956518|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	516.3017578125	2	516.299853	1030.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.718	1	45.407	44.907	45.907	-0.31094								0	0	0	0.76611	1	17125	17125		14.582	3.7578	1				35839	18158	22856	22977	34497	34497					0.07108422833630357
VGIKKELM	8	Unmodified	_VGIKKELM_					0	0	0			REV__ENSG00000172296|ENST00000399002|SPTLC3	REV__ENSG00000172296|ENST00000399002|SPTLC3	MSMS	HCT116MG_D190212_S4	4	459.28021240234375	2	459.278063	916.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.331	1	48.967	48.467	49.467	-0.36354								0	0	0	0.8837	1	18294	18294		2.8892	0	1		+		35840	13382	22857	22978	34498	34498					0.07996490064863337
VGILVKLFC	9	Unmodified	_VGILVKLFC_					0	0	0		ENST00000483778.5_1_2:242593961-242598937:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF	ENST00000483778.5_1_2:242593961-242598937:+|nuORF	ENST00000483778.5_1_2:242593961-242598937:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	496.30413818359375	2	496.304081	990.59361	0.43314	0.00021497	-0.086574	-4.2967E-05	0.34656	0.000172	496.30391476130296	45.644	2.542	45.333	44.42	46.962	-0.31094					88	55	3	0	0	0	0.74258	1	17074	17074		2.3027	0	1	20579000			35841	8277	22858	22979	34499	34499					0.0979365347861858
VGIMIGVL	8	Unmodified	_VGIMIGVL_					0	0	0		nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	MSMS	HCT116MG_D190212_S1	1	401.2506408691406	2	401.248775	800.482997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.735	1	22.735	22.235	23.235	0								0	0	0	0.86899	1	8063	8063		17.087	0	1				35842	2007	22859	22980	34500	34500					0.07477433490407748
VGISFGGILV	10	Unmodified	_VGISFGGILV_					0	0	0		nc|ENSG00000143994|Q96SE0-3|ABHD1;ENSG00000143994|ENST00000316470|ABHD1	nc|ENSG00000143994|Q96SE0-3|ABHD1	nc|ENSG00000143994|Q96SE0-3|ABHD1	MULTI-MSMS	HCT116MG_D190212_S2	2	481.2896728515625	2	481.289485	960.564418	0.2937	0.00014136	-0.084875	-4.0849E-05	0.20883	0.00010051	481.2894371090862	56.416	0.20745	56.233	56.104	56.312	-0.18261					6	3	2	0	0	0	0.54141	1	21793	21793		32.305	5.9642	1	27185000			35843	3844	22860	22981	34501	34501					0.0825583245400594
VGISFGGILV	10	Unmodified	_VGISFGGILV_					0	0	0		nc|ENSG00000143994|Q96SE0-3|ABHD1;ENSG00000143994|ENST00000316470|ABHD1	nc|ENSG00000143994|Q96SE0-3|ABHD1	nc|ENSG00000143994|Q96SE0-3|ABHD1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	481.289485	960.564418	0.17819	8.5762E-05	0.5754	0.00027693	0.75359	0.0003627	481.2897458471199	56.299	0.15538	56.299	56.222	56.377	0	0.033108	0.00025688	NaN	32.305	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6758700			35844	3844	22860	22981							0.0825583245400594
VGITALTLRAI	11	Unmodified	_VGITALTLRAI_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	HCT116MG_D190212_S1	1	564.3598022460938	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.001	1	53.001	52.501	53.501	0								0	0	0	0.95581	1	20287	20287		3.2813	0.28607	1				35845	6364	22861	22982	34502	34502					0.14910839845242663
VGITVTKK	8	Unmodified	_VGITVTKK_					0	0	0		MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant;ENSG00000101825|ENST00000217939|MXRA5;ENST00000420610.1_1_Y:14088999-14090148:+|nuORF;MXRA5|p.S828Qfs*8|1|0.12|ENSG00000101825|chrX:3323204-3323204|G/-|frameshift_variant	MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	423.27520751953125	2	423.276378	844.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.7	1	50.528	50.028	51.028	-0.1719								0	0	0	0.8837	1	19436	19436		5.2307	2.6532	1				35846	1808	22862	22983	34503	34503					0.10971563282521402
VGIVVGTV	8	Unmodified	_VGIVVGTV_					0	0	0		nc|ENSG00000237541|P01909|HLA-DQA1	nc|ENSG00000237541|P01909|HLA-DQA1	nc|ENSG00000237541|P01909|HLA-DQA1	MSMS	HCT116MG_D190212_S3	3	372.2279357910156	2	372.236722	742.45889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.265	1	59.001	58.501	59.501	-0.26405								0	0	0	0.8837	1	22565	22565		0.69038	0	1				35847	9648	22863	22984	34504	34504					0.07735916328397252
VGKAGVSP	8	Unmodified	_VGKAGVSP_					0	0	0			REV__ENST00000257552.6_1_12:120779899-120780196:-|nuORF	REV__ENST00000257552.6_1_12:120779899-120780196:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	357.7103576660156	2	357.710871	713.407189	-0.14692	-5.2553E-05	-0.21012	-7.5161E-05	-0.35703	-0.00012771	357.7106775197023	27.816	0.61896	27.474	27.139	27.758	-0.34201					17	11	2	0	0	0	0.81097	1	10172	10172		10.183	4.423	1	12044000	+		35848	14612	22864	22985	34505	34505					0.039021726344572016
VGKEGKSV	8	Unmodified	_VGKEGKSV_					0	0	0			REV__ZNF652|p.K178Rfs*4|1|0.39|ENSG00000198740|chr17:49317193-49317193|T/-|frameshift_variant	REV__ZNF652|p.K178Rfs*4|1|0.39|ENSG00000198740|chr17:49317193-49317193|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	402.2332763671875	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.601	1	28.27	27.77	28.77	-0.33138								0	0	0	0.8837	1	10292	10292		2.8892	0.58649	1		+		35849	14144	22865	22986	34506	34506					0.04573826834655392
VGKFMPGK	8	Unmodified	_VGKFMPGK_					0	0	0			REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.24395751953125	2	432.244024	862.473494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.431	1	28.225	27.725	28.725	-0.20593								0	0	0	0.8837	1	10288	10288		2.3027	0.24298	1		+		35850	13694	22866	22987	34507	34507					0.03675665204877987
VGKFMPGK	8	Unmodified	_VGKFMPGK_					0	0	0			REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.2438659667969	2	432.244024	862.473494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.838	1	29.602	29.102	30.102	-0.23655								0	0	0	0.8837	1	10853	10853		4.756	1.8668	1		+		35851	13694	22866	22987	34508	34508					0.03675665204877987
VGKFMPGK	8	Unmodified	_VGKFMPGK_					0	0	0			REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	432.2435302734375	2	432.244024	862.473494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.752	1	25.462	24.962	25.962	-0.29022								0	0	0	0.8837	1	9141	9141		5.2307	1.2863	1		+		35852	13694	22866	22987	34509	34509					0.03675665204877987
VGKFMPGK	8	Unmodified	_VGKFMPGK_					0	0	0			REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	432.24383544921875	2	432.244024	862.473494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.799	1	26.492	25.992	26.992	-0.30717								0	0	0	0.8837	1	9564	9564		7.9102	0.62092	1		+		35853	13694	22866	22987	34510	34510					0.03675665204877987
VGKFMPGK	8	Unmodified	_VGKFMPGK_					0	0	0			REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	REV__SETD2|p.T305Qfs*35|2|0.24|ENSG00000181555|chr3:47123723-47123723|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	432.243896484375	2	432.244024	862.473494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.834	1	29.483	28.983	29.983	-0.35072								0	0	0	0.8837	1	10790	10790		4.756	1.8668	1		+		35854	13694	22866	22987	34511	34511					0.03675665204877987
VGKGTSFKLVY	11	Unmodified	_VGKGTSFKLVY_					0	0	0			REV__ENST00000474254.5_1_7:129940682-129945790:+|nuORF	REV__ENST00000474254.5_1_7:129940682-129945790:+|nuORF	MSMS	HCT116MG_D190212_S2	2	400.2330627441406	3	400.23253	1197.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.995	1	12.698	12.198	13.198	-0.29721								0	0	0	0.9619	1	4253	4253		0.094841	0	1		+		35855	11875	22867	22988	34512	34512					0.0848284709127256
VGKIIIRKEY	10	Unmodified	_VGKIIIRKEY_					0	0	0			REV__ENST00000487643.1_1_3:183240843-183262455:-|nuORF	REV__ENST00000487643.1_1_3:183240843-183262455:-|nuORF	MSMS	HCT116MG_D190212_S2	2	406.9241027832031	3	406.923807	1217.74959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1216	1	6.9243	6.4243	7.4243	-0.19725								0	0	0	0.96911	1	2232	2232		0.15932	0.01943	1		+		35856	13396	22868	22989	34513	34513					0.14942815253607478
VGKIKRLKK	9	Unmodified	_VGKIKRLKK_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MSMS	HCT116MG_D190212_S2	2	535.38330078125	2	535.382043	1068.74953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.191	1	62.055	61.555	62.555	-0.13585								0	0	0	0.77008	1	24101	24101		0.6015	0.6015	1				35857	4591	22869	22990	34514	34514					0.21790860044256988
VGKIWGFKV	9	Unmodified	_VGKIWGFKV_					0	0	0			REV__SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	REV__SLC12A2|p.E1119Rfs*7|1|0.47|ENSG00000064651|chr5:128184417-128184418|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	517.3138427734375	2	517.313295	1032.61204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.9	1	10.627	10.127	11.127	-0.27365								0	0	0	0.77008	1	3479	3479		0.6015	0	1		+		35858	10689	22870	22991	34515	34515					0.09703531444847613
VGKKKLVFPRK	11	Unmodified	_VGKKKLVFPRK_					0	0	0			REV__KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	REV__KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	650.4326171875	2	650.434807	1298.85506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.844	1	53.514	53.014	54.014	-0.32923								0	0	0	0.9598	1	20115	20115		1.1933	0.84271	1		+		35859	16915	22871	22992	34516	34516					0.21758776169849625
VGKKKRQYVLL	11	Unmodified	_VGKKKRQYVLL_					0	0	0			REV__ENST00000553852.1_1_14:35515838-35522488:+|nuORF	REV__ENST00000553852.1_1_14:35515838-35522488:+|nuORF	MSMS	HCT116MG_D190212_S2	2	666.4267578125	2	666.429722	1330.84489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.909	1	42.839	42.339	43.339	-0.069984								0	0	0	0.95954	1	16254	16254		1.3295	0.13619	1		+		35860	16439	22872	22993	34517	34517					0.192701684446547
VGKKPLCF	8	Unmodified	_VGKKPLCF_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MSMS	HCT116MG_D190212_S3	3	446.2593994140625	2	446.259674	890.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.882	1	30.621	30.121	31.121	-0.26071								0	0	0	0.8837	1	11262	11262		0.79363	0	1		+		35861	10969	22873	22994	34518	34518					0.05516238238965343
VGKKPLCF	8	Unmodified	_VGKKPLCF_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MSMS	HCT116MG_D190212_S4	4	446.2596130371094	2	446.259674	890.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.732	1	23.485	22.985	23.985	-0.24775								0	0	0	0.8837	1	8325	8325		0.79363	0	1		+		35862	10969	22873	22994	34519	34519					0.05516238238965343
VGKKYLLA	8	Unmodified	_VGKKYLLA_					0	0	0			REV__EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant	REV__EML6|p.N1675Mfs*7|2|0.32|ENSG00000214595|chr2:54962572-54962572|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	446.28564453125	2	446.286746	890.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.627	1	30.377	29.877	30.877	-0.24946								0	0	0	0.8837	1	11159	11159		0.79363	0	1		+		35863	10454	22874	22995	34520	34520					0.10928153662166551
VGKLKVTT	8	Unmodified	_VGKLKVTT_					0	0	0			REV__HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant	REV__HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	423.2749938964844	2	423.276378	844.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.192	1	53.864	53.364	54.364	-0.3276								0	0	0	0.8837	1	20255	20255		0.69038	0	1		+		35864	16893	22875	22996	34521	34521					0.10971563282498664
VGKLKVTT	8	Unmodified	_VGKLKVTT_					0	0	0			REV__HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant	REV__HYOU1|p.K651Rfs*46|1|0.13|ENSG00000149428|chr11:119049058-119049058|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	423.27490234375	2	423.276378	844.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.769	1	54.446	53.946	54.946	-0.32349								0	0	0	0.8837	1	20488	20488		2.3027	0	1		+		35865	16893	22875	22996	34522	34522					0.10971563282498664
VGKRGVRG	8	Unmodified	_VGKRGVRG_					0	0	0		ENST00000460901.1_1_2:120124909-120125765:+|nuORF;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI	ENST00000460901.1_1_2:120124909-120125765:+|nuORF	ENST00000460901.1_1_2:120124909-120125765:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	829.2542724609375	1	828.516245	827.508969	0.74437	0.00061672	0.1931	0.00015999	0.93747	0.00077671	828.5162530705367	47.672	0.54993	47.672	47.395	47.944	0					36	10	5	0	0	0	0.87576	1	18170	18170		0.79363	0	1	3063099999.9999995			35866	8045	22876	22997	34523	34523					0.08831463776903092
VGKRIVDLQHT	11	Unmodified	_VGKRIVDLQHT_					0	0	0		ENSG00000274180|ENST00000611551|NATD1	ENSG00000274180|ENST00000611551|NATD1	ENSG00000274180|ENST00000611551|NATD1	MULTI-MSMS	HCT116MG_D190212_S2	2	633.3698120117188	2	633.369861	1264.72517	0.52376	0.00033174	-0.83265	-0.00052737	-0.30888	-0.00019564	633.3693721129858	50.434	0.98802	50.262	49.985	50.973	-0.1719					27	18	2	0	0	0	0.74191	1	19328	19328		2.9952	0	1	20872000			35867	6673	22877	22998	34524	34524					0.1033955510006308
VGKRLLLLFA	10	Unmodified	_VGKRLLLLFA_					0	0	0		KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant;KDM3B|p.P1317Rfs*10|1|0.45|ENSG00000120733|chr5:138420936-138420936|C/-|frameshift_variant;ENSG00000120733|ENST00000314358|KDM3B	KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant	KDM3B|p.K627Nfs*60|1|0.38|ENSG00000120733|chr5:138391505-138391505|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	377.25433349609375	3	377.253376	1128.7383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.243	1	30.982	30.482	31.482	-0.26071								0	0	0	0.97045	1	11407	11407		0.15932	0.036457	1				35868	2711	22878	22999	34525	34525					0.17908037950132893
VGKRLLLLWQL	11	Unmodified	_VGKRLLLLWQL_					0	0	0		ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	MSMS	HCT116MG_D190212_S1	1	669.9373779296875	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.397	1	32.397	31.897	32.897	0								0	0	0	0.95925	1	11954	11954		1.4819	0	1				35869	8942	22879	23000	34526	34526					0.19931356450047133
VGKRLLLLWQL	11	Unmodified	_VGKRLLLLWQL_					0	0	0		ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	MSMS	HCT116MG_D190212_S3	3	669.9345092773438	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.153	1	45.84	45.34	46.34	-0.31237								0	0	0	0.96141	1	17300	17300		0.35063	0	1				35870	8942	22879	23000	34527	34527					0.19931356450047133
VGKRLLLLWQL	11	Unmodified	_VGKRLLLLWQL_					0	0	0		ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	MSMS	HCT116MG_D190212_S3	3	669.9352416992188	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.453	1	56.169	55.669	56.669	-0.28367								0	0	0	0.96141	1	21432	21432		0.35063	0	1				35871	8942	22879	23000	34528	34528					0.19931356450047133
VGKRLLLLWQL	11	Unmodified	_VGKRLLLLWQL_					0	0	0		ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	MSMS	HCT116MG_D190212_S4	4	669.6361694335938	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.945	1	49.584	49.084	50.084	-0.3608								0	0	0	0.96141	1	18540	18540		0.35063	0	1				35872	8942	22879	23000	34529	34529					0.19931356450047133
VGKRLNLIVP	10	Unmodified	_VGKRLNLIVP_					0	0	0		tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	370.243408203125	3	370.244881	1107.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.324	1	23.285	22.785	23.785	-0.03968								0	0	0	0.96769	1	8229	8229		0.77653	0.078866	1				35873	18374	22880	23001	34530	34530					0.1632656342771952
VGKRLNLIVP	10	Unmodified	_VGKRLNLIVP_					0	0	0		tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	tr|U7SNV1|U7SNV1_FUSNUOligosacchariderepeatunitpolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01958PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	370.2434387207031	3	370.244881	1107.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.501	1	23.253	22.753	23.753	-0.24775								0	0	0	0.96769	1	8231	8231		0.77653	0.078866	1				35874	18374	22880	23001	34531	34531					0.1632656342771952
VGKRPVQW	8	Unmodified	_VGKRPVQW_					0	0	0			REV__nc|ENSG00000183347|Q6ZN66-2|GBP6	REV__nc|ENSG00000183347|Q6ZN66-2|GBP6	MSMS	HCT116MG_D190212_S1	1	485.2872314453125	2	485.285069	968.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.756	1	51.756	51.256	52.256	0								0	0	0	0.8837	1	19782	19782		6.3541	1.1234	1		+		35875	13758	22881	23002	34532	34532					0.07004903608174118
VGKSGPAK	8	Unmodified	_VGKSGPAK_					0	0	0			REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	REV__AFF3|p.M875Cfs*22|1|0.25|ENSG00000144218|chr2:99582968-99582968|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	372.2225036621094	2	372.224146	742.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.347	1	34.171	33.671	34.671	-0.17512								0	0	0	0.8837	1	12775	12775		5.2307	0	1		+		35876	9878	22882	23003	34533	34533					0.052218615258084355
VGKSSVIN	8	Unmodified	_VGKSSVIN_					0	0	0		ENST00000469191.1_1_1:38041920-38047841:-|nuORF;tr|U7SRY1|U7SRY1_FUSNURibosomebiogenesisGTPaseYqeHOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01468PE=4SV=1;ENSG00000134697|ENST00000373062|GNL2	ENST00000469191.1_1_1:38041920-38047841:-|nuORF	ENST00000469191.1_1_1:38041920-38047841:-|nuORF	MSMS	HCT116MG_D190212_S1	1	402.2345886230469	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.3	1	23.3	22.8	23.8	0								0	0	0	0.8396	1	8291	8291		19.439	4.8573	1				35877	3297	22883	23004	34534	34534					0.04573826834666761
VGKTAAVY	8	Unmodified	_VGKTAAVY_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5;ENST00000585133.1_1_17:29162236-29196669:+|nuORF;ATAD5|p.F1193Lfs*6|2|0.35|ENSG00000176208|chr17:30869612-30869612|T/-|frameshift_variant;nc|ENSG00000176208|Q96QE3-2|ATAD5;ATAD5|p.S1470Ffs*4|1|0.42|ENSG00000176208|chr17:30892750-30892751|-/T|frameshift_variant;ATAD5|p.S1470Pfs*10|1|0.29|ENSG00000176208|chr17:30892751-30892751|T/-|frameshift_variant	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	HCT116MG_D190212_S3	3	404.7318420410156	2	404.731803	807.449054	-0.056706	-2.2951E-05	0.11018	4.4592E-05	0.053471	2.1642E-05	404.73171075716306	23.843	0.20852	23.781	23.686	23.895	-0.061449					5	3	2	0	0	0	0.78216	1	8459	8459		13.508	2.3934	1	2883200			35878	5412	22884	23005	34535	34535					0.03762728322988096
VGKVGAKY	8	Unmodified	_VGKVGAKY_					0	0	0			REV__tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	REV__tr|U7T457|U7T457_FUSNUTryptophanaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00262PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	411.24755859375	2	411.247621	820.480688	-0.18199	-7.4841E-05	0.49768	0.00020467	0.3157	0.00012983	411.2477272579705	23.229	0.312	22.844	22.674	22.986	-0.3852					9	5	3	0	0	0	0.73076	1	8276	8276		19.439	4.8573	1	30646000	+		35879	17963	22885	23006	34536	34536					0.06326721076936792
VGKVIILFLL	10	Unmodified	_VGKVIILFLL_					0	0	0			REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	372.2591857910156	3	372.258127	1113.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.828	1	36.713	36.213	37.213	-0.11478								0	0	0	0.97045	1	13784	13784		0.15932	0.15932	1		+		35880	17767	22886	23007	34537	34537					0.20022690378414154
VGKVIILFLL	10	Unmodified	_VGKVIILFLL_					0	0	0			REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	372.2593078613281	3	372.258127	1113.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.507	1	27.325	26.825	27.825	-0.1825								0	0	0	0.97045	1	9916	9916		0.15932	0.15932	1		+		35881	17767	22886	23007	34538	34538					0.20022690378414154
VGKVIILFLL	10	Unmodified	_VGKVIILFLL_					0	0	0			REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	REV__tr|U7SSH7|U7SSH7_FUSNUBranched-chainaminoacidtransportsystemIIcarrierproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01455PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	372.2587890625	3	372.258127	1113.75255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.425	1	27.107	26.607	27.607	-0.31794								0	0	0	0.97045	1	9817	9817		0.15932	0.15932	1		+		35882	17767	22886	23007	34539	34539					0.20022690378414154
VGLELLKKET	10	Unmodified	_VGLELLKKET_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MSMS	HCT116MG_D190212_S2	2	377.23272705078125	3	377.232418	1128.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.677	1	20.297	19.797	20.797	-0.37949								0	0	0	0.94528	1	7237	7237		5.7834	1.9071	1		+		35883	12857	22887	23008	34540	34540					0.11623427371409889
VGLFSKFIP	9	Unmodified	_VGLFSKFIP_					0	0	0			REV__tr|U7T3C5|U7T3C5_FUSNUDUF819domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00216PE=4SV=1	REV__tr|U7T3C5|U7T3C5_FUSNUDUF819domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00216PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	504.7530212402344	2	504.299853	1006.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.193	1	40.193	39.693	40.693	0								0	0	0	0.76902	1	15100	15100		4.3292	0	1		+		35884	17941	22888	23009	34541	34541					0.08212422833662458
VGLFYRQEP	9	Unmodified	_VGLFYRQEP_					0	0	0			REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	MSMS	HCT116MG_D190212_S1	1	370.1970520019531	3	370.197708	1107.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.758	1	31.758	31.258	32.258	0								0	0	0	0.7696	1	11696	11696		1.1933	0.12188	1		+		35885	13137	22889	23010	34542	34542					0.021811453345662812
VGLGAGNY	8	Unmodified	_VGLGAGNY_					0	0	0			REV__SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant	REV__SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	750.3790893554688	1	750.37808	749.370804	0.83517	0.0006267	0.14363	0.00010777	0.9788	0.00073447	750.3781788525629	31.719	0.31285	31.719	31.544	31.857	0					8	5	2	0	0	0	0.76257	1	11684	11684		15.768	3.2367	1	8924900	+		35886	12489	22890	23011	34543	34543					-0.013907042622349763
VGLGAGNY	8	Unmodified	_VGLGAGNY_					0	0	0			REV__SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant	REV__SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	750.3782348632812	1	750.37808	749.370804	0.38813	0.00029125	0.37325	0.00028008	0.76138	0.00057132	750.3781956740886	32.027	0.57214	31.748	31.526	32.098	-0.27841					21	10	3	0	0	0	0.76257	1	11710	11710		15.768	3.2367	1	26703000	+		35887	12489	22890	23011	34544	34544					-0.013907042622349763
VGLGAGNY	8	Unmodified	_VGLGAGNY_					0	0	0			REV__SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant	REV__SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	750.37890625	1	750.37808	749.370804	0.737	0.00055303	0.087389	6.5575E-05	0.82439	0.0006186	750.37801365269	32.199	0.46706	31.823	31.642	32.109	-0.37529					14	8	2	0	0	0	0.76257	1	11705	11705		15.768	4.6538	1	10799000	+		35888	12489	22890	23011	34545	34545					-0.013907042622349763
VGLGDSKK	8	Unmodified	_VGLGDSKK_					0	0	0		ENST00000563181.1_1_16:2030938-2031410:-|nuORF;ENST00000354249.8_2_16:2030177-2031410:-|nuORF;ENST00000356120.8_2_16:2030177-2031410:-|nuORF	ENST00000563181.1_1_16:2030938-2031410:-|nuORF	ENST00000563181.1_1_16:2030938-2031410:-|nuORF	MSMS	HCT116MG_D190212_S4	4	402.23333740234375	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.799	1	34.413	33.913	34.913	-0.38606								0	0	0	0.8837	1	12721	12721		2.5775	0.27475	1				35889	7282	22891	23012	34546	34546					0.04573826834666761
VGLGKFLL	8	Unmodified	_VGLGKFLL_					0	0	0		nc|ENSG00000106771|Q9H330-4|TMEM245;TMEM245|p.M731Vfs*34|1|0.2|ENSG00000106771|chr9:109038049-109038050|AT/-|frameshift_variant;ENSG00000106771|ENST00000374586|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	MSMS	HCT116MG_D190212_S4	4	423.7767028808594	2	423.776014	845.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.631	1	53.299	52.799	53.799	-0.33193								0	0	0	0.8837	1	20029	20029		0.79363	0	1				35890	2095	22892	23013	34547	34547					0.10852768633469623
VGLGKFLL	8	Unmodified	_VGLGKFLL_					0	0	0		nc|ENSG00000106771|Q9H330-4|TMEM245;TMEM245|p.M731Vfs*34|1|0.2|ENSG00000106771|chr9:109038049-109038050|AT/-|frameshift_variant;ENSG00000106771|ENST00000374586|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	MSMS	HCT116MG_D190212_S4	4	423.7761535644531	2	423.776014	845.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.262	1	62.013	61.513	62.513	-0.24919								0	0	0	0.8837	1	23508	23508		0.79363	0	1				35891	2095	22892	23013	34548	34548					0.10852768633469623
VGLGLLSSRLL	11	Unmodified	_VGLGLLSSRLL_					0	0	0		ENST00000233557.7_1_2:27664698-27664935:+|nuORF	ENST00000233557.7_1_2:27664698-27664935:+|nuORF	ENST00000233557.7_1_2:27664698-27664935:+|nuORF	MSMS	HCT116MG_D190212_S3	3	564.3592529296875	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.369	1	53.066	52.566	53.566	-0.30305								0	0	0	0.95925	1	20197	20197		1.4819	0.15237	1				35892	6770	22893	23014	34549	34549					0.14910839845242663
VGLGLLSSRLL	11	Unmodified	_VGLGLLSSRLL_					0	0	0		ENST00000233557.7_1_2:27664698-27664935:+|nuORF	ENST00000233557.7_1_2:27664698-27664935:+|nuORF	ENST00000233557.7_1_2:27664698-27664935:+|nuORF	MSMS	HCT116MG_D190212_S3	3	564.3590087890625	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.943	1	53.644	53.144	54.144	-0.29946								0	0	0	0.95521	1	20428	20428		3.5965	0.31518	1				35893	6770	22893	23014	34550	34550					0.14910839845242663
VGLGLLSSRLL	11	Unmodified	_VGLGLLSSRLL_					0	0	0		ENST00000233557.7_1_2:27664698-27664935:+|nuORF	ENST00000233557.7_1_2:27664698-27664935:+|nuORF	ENST00000233557.7_1_2:27664698-27664935:+|nuORF	MSMS	HCT116MG_D190212_S3	3	564.359130859375	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.677	1	55.389	54.889	55.889	-0.28773								0	0	0	0.95925	1	21121	21121		1.4819	0.15237	1				35894	6770	22893	23014	34551	34551					0.14910839845242663
VGLGLLSSRLL	11	Unmodified	_VGLGLLSSRLL_					0	0	0		ENST00000233557.7_1_2:27664698-27664935:+|nuORF	ENST00000233557.7_1_2:27664698-27664935:+|nuORF	ENST00000233557.7_1_2:27664698-27664935:+|nuORF	MSMS	HCT116MG_D190212_S3	3	564.3591918945312	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.834	1	56.554	56.054	57.054	-0.27913								0	0	0	0.95925	1	21584	21584		1.4819	0.8804	1				35895	6770	22893	23014	34552	34552					0.14910839845242663
VGLGPGRIAPP	11	Unmodified	_VGLGPGRIAPP_					0	0	0			REV__MLEC|p.V76Wfs*9|1|0.21|ENSG00000110917|chr12:120687520-120687520|G/-|frameshift_variant	REV__MLEC|p.V76Wfs*9|1|0.21|ENSG00000110917|chr12:120687520-120687520|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	517.309814453125	2	517.311284	1032.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.526	1	49.164	48.664	49.664	-0.36213								0	0	0	0.95521	1	18373	18373		3.5965	1.5367	1		+		35896	11415	22894	23015	34553	34553					0.09301441951151901
VGLGRAVEVRR	11	Unmodified	_VGLGRAVEVRR_					0	0	0		ENST00000497918.5_1_2:220029863-220033027:-|nuORF	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	606.369873046875	2	606.370195	1210.72584	0.50795	0.000308	-0.72631	-0.00044041	-0.21836	-0.00013241	606.369673013791	47.228	0.40202	47.228	46.907	47.309	0					13	7	3	0	0	0	0.74191	1	17910	17910		2.7352	1.2533	1	23899000			35897	8404	22895	23016	34554	34554					0.12890394539772387
VGLGRAVEVRR	11	Unmodified	_VGLGRAVEVRR_					0	0	0		ENST00000497918.5_1_2:220029863-220033027:-|nuORF	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	ENST00000497918.5_1_2:220029863-220033027:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	607.3392333984375	2	606.370195	1210.72584	0.68118	0.00041305	-0.84134	-0.00051016	-0.16016	-9.7115E-05	606.3695019551857	49.013	1.0637	48.859	48.174	49.238	-0.15405					43	20	3	0	0	0	0.74191	1	18718	18718		5.2969	0.39987	1	152560000			35898	8404	22895	23016	34555	34555					0.12890394539772387
VGLGRHNL	8	Unmodified	_VGLGRHNL_					0	0	0		ENSG00000142615|ENST00000359621|CELA2A	ENSG00000142615|ENST00000359621|CELA2A	ENSG00000142615|ENST00000359621|CELA2A	MSMS	HCT116MG_D190212_S1	1	433.2555847167969	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.049	1	33.049	32.549	33.549	0								0	0	0	0.8837	1	12217	12217		2.8892	0.31174	1				35899	3767	22896	23017	34556	34556					0.05531757539984028
VGLGRKRS	8	Unmodified	_VGLGRKRS_					0	0	0		ENST00000353703.8_2_20:43514450-43530178:+|nuORF;ENST00000428262.1_3_20:43514450-43516249:+|nuORF;ENST00000372839.7_2_20:43514450-43530188:+|nuORF	ENST00000353703.8_2_20:43514450-43530178:+|nuORF	ENST00000353703.8_2_20:43514450-43530178:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	436.7746276855469	2	436.774868	871.535184	-0.057004	-2.4898E-05	0.16555	7.2306E-05	0.10854	4.7408E-05	436.77484690197537	49.182	1.8451	49.028	48.783	50.628	-0.15405					78	35	5	0	0	0	0.86388	1	19019	19019		2.8892	2.8892	1	2630500000			35900	7279	22897	23018	34557	34557					0.09427732948370249
VGLGRKRS	8	Unmodified	_VGLGRKRS_					0	0	0		ENST00000353703.8_2_20:43514450-43530178:+|nuORF;ENST00000428262.1_3_20:43514450-43516249:+|nuORF;ENST00000372839.7_2_20:43514450-43530188:+|nuORF	ENST00000353703.8_2_20:43514450-43530178:+|nuORF	ENST00000353703.8_2_20:43514450-43530178:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	436.7751159667969	2	436.774868	871.535184	0.066977	2.9254E-05	-0.43311	-0.00018917	-0.36613	-0.00015992	436.77459033433183	49.788	2.6121	49.473	48.975	51.588	-0.31525					137	49	5	0	0	0	0.86388	1	19162	19162		2.8892	2.0956	1	934580000			35901	7279	22897	23018	34558	34558					0.09427732948370249
VGLGRKRS	8	Unmodified	_VGLGRKRS_					0	0	0		ENST00000353703.8_2_20:43514450-43530178:+|nuORF;ENST00000428262.1_3_20:43514450-43516249:+|nuORF;ENST00000372839.7_2_20:43514450-43530188:+|nuORF	ENST00000353703.8_2_20:43514450-43530178:+|nuORF	ENST00000353703.8_2_20:43514450-43530178:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	436.774868	871.535184	0.066977	2.9254E-05	-0.43311	-0.00018917	-0.36613	-0.00015992	436.77459033433183	49.788	2.6121	49.473	48.975	51.588	-0.31525	0	0	NaN	2.8892	137	49	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	934580000			35902	7279	22897	23018							0.09427732948370249
VGLGSRPRVQF	11	Unmodified	_VGLGSRPRVQF_					0	0	0			REV__ENST00000567752.5_1_16:67272249-67272345:-|nuORF	REV__ENST00000567752.5_1_16:67272249-67272345:-|nuORF	MSMS	HCT116MG_D190212_S4	4	608.3495483398438	2	608.351471	1214.68839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.087	1	37.704	37.204	38.204	-0.38283								0	0	0	0.95581	1	13945	13945		3.2813	0.97858	1		+		35903	16553	22898	23019	34559	34559					0.08963303274163081
VGLGTGLAAP	10	Unmodified	_VGLGTGLAAP_					0	0	0		ENST00000486209.5_1_22:21832732-21838406:-|nuORF;ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENST00000486209.5_1_22:21832732-21838406:-|nuORF	ENST00000486209.5_1_22:21832732-21838406:-|nuORF	MSMS	HCT116MG_D190212_S2	2	428.2491149902344	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.912	1	47.779	47.279	48.279	-0.13281								0	0	0	0.93854	1	18288	18288		7.2892	2.96	1				35904	8294	22899	23020	34560	34560					0.05310399868744753
VGLGTVPV	8	Unmodified	_VGLGTVPV_					0	0	0		ENST00000497571.5_1_10:3819016-3819262:-|nuORF	ENST00000497571.5_1_10:3819016-3819262:-|nuORF	ENST00000497571.5_1_10:3819016-3819262:-|nuORF	MSMS	HCT116MG_D190212_S2	2	371.22723388671875	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.856	1	42.786	42.286	43.286	-0.069984								0	0	0	0.8837	1	16232	16232		6.3541	0	1				35905	8403	22900	23021	34561	34561					0.06263629811326155
VGLGVAKQ	8	Unmodified	_VGLGVAKQ_					0	0	0			REV__ENST00000393892.7_1_17:40126102-40126558:+|nuORF	REV__ENST00000393892.7_1_17:40126102-40126558:+|nuORF	MSMS	HCT116MG_D190212_S1	1	386.23858642578125	2	386.239796	770.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.79	1	40.79	40.29	41.29	0								0	0	0	0.8837	1	15341	15341		2.8892	0	1		+		35906	15332	22901	23022	34562	34562					0.07062434559895792
VGLHKVFKLQT	11	Unmodified	_VGLHKVFKLQT_					0	0	0		TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	635.3851928710938	2	635.387522	1268.76049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.528	1	61.385	60.885	61.885	-0.14227								0	0	0	0.95636	1	23833	23833		2.9952	1.3426	1				35907	3154	22902	23023	34563	34563					0.13686217627900987
VGLHPRIA	8	Unmodified	_VGLHPRIA_					0	0	0			REV__ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	REV__ABCA7|p.G1573Afs*82|1|0.27|ENSG00000064687|chr19:1057033-1057033|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	862.5250244140625	1	862.525747	861.518471	0.99812	0.0008609	-0.41092	-0.00035443	0.58719	0.00050647	862.5250030403934	60.339	3.2084	60.087	58.06	61.268	-0.25233					110	61	2	0	0	0	0.87576	4	22950	22950;23185;23377;23421		0.79363	0	1	14102000	+		35908	9821	22903	23024	34564;34565;34566;34567	34564					0.08217232062406765
VGLIICVK	8	Unmodified	_VGLIICVK_					0	0	0		nc|ENSG00000157873|Q92956-2|TNFRSF14;ENST00000463835.5_1_1:2492021-2494709:+|nuORF;ENST00000475523.5_1_1:2490981-2494709:+|nuORF;ENSG00000157873|ENST00000355716|TNFRSF14;ENST00000463471.6_1_1:2491166-2493466:+|nuORF	nc|ENSG00000157873|Q92956-2|TNFRSF14	nc|ENSG00000157873|Q92956-2|TNFRSF14	MULTI-MSMS	HCT116MG_D190212_S1	1	844.5343627929688	1	844.532472	843.525196	0.68889	0.00058179	0.74621	0.00063019	1.4351	0.001212	844.5334880893184	60.525	0.84865	60.525	60.052	60.901	0					21	16	2	0	0	0	0.84759	1	23345	23345		5.7604	3.1829	1	8597700			35909	4348	22904	23025	34568	34568					0.09717408898768554
VGLIIFLLC	9	Unmodified	_VGLIIFLLC_					0	0	0		ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	495.8063049316406	2	495.806457	989.598361	0.15481	7.6755E-05	0.10959	5.4335E-05	0.2644	0.00013109	495.80643929671714	48.319	0.30807	48.319	48.152	48.46	0					8	5	2	0	0	0	0.74258	1	18376	18376		2.3027	0	1	15900000			35910	5018	22905	23026	34569	34569					0.10314537621400177
VGLIIFLLC	9	Unmodified	_VGLIIFLLC_					0	0	0		ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	495.806457	989.598361	0.15481	7.6755E-05	0.10959	5.4335E-05	0.2644	0.00013109	495.80643929671714	48.319	0.30807	48.319	48.152	48.46	0	0	0	NaN	2.3027	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15900000			35911	5018	22905	23026							0.10314537621400177
VGLISWAGTY	10	Unmodified	_VGLISWAGTY_					0	0	0		FSCN3|p.L333Wfs*34|1|0.11|ENSG00000106328|chr7:127598467-127598467|C/-|frameshift_variant;ENSG00000106328|ENST00000265825|FSCN3	FSCN3|p.L333Wfs*34|1|0.11|ENSG00000106328|chr7:127598467-127598467|C/-|frameshift_variant	FSCN3|p.L333Wfs*34|1|0.11|ENSG00000106328|chr7:127598467-127598467|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	356.1913146972656	3	356.190442	1065.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.281	1	31.904	31.404	32.404	-0.37765								0	0	0	0.96377	1	11751	11751		0.69767	0	1				35912	2070	22906	23027	34570	34570					0.01934340586012695
VGLKLVIQAK	10	Unmodified	_VGLKLVIQAK_					0	0	0			REV__MDH1|p.A168V|1|0.17|ENSG00000014641|chr2:63604700-63604700|C/T|missense_variant	REV__MDH1|p.A168V|1|0.17|ENSG00000014641|chr2:63604700-63604700|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	356.9093017578125	3	356.909498	1067.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.36	1	11.078	10.578	11.578	-0.28186								0	0	0	0.97045	1	3655	3655		0.15932	0	1		+		35913	17012	22907	23028	34571	34571					0.1755204519615745
VGLKRKRKLL	10	Unmodified	_VGLKRKRKLL_					0	0	0			REV__nc|ENSG00000160208|Q14684-2|RRP1B	REV__nc|ENSG00000160208|Q14684-2|RRP1B	MSMS	HCT116MG_D190212_S1	1	605.927978515625	2	605.927149	1209.83975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.072	1	46.072	45.572	46.572	0								0	0	0	0.96911	1	17470	17470		0.45834	0.10771	1		+		35914	12823	22908	23029	34572	34572					0.24321909372702066
VGLKRNYI	8	Unmodified	_VGLKRNYI_					0	0	0		POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENSG00000177084|ENST00000320574|POLE;POLE|p.K1170Nfs*49|1|0.15|ENSG00000177084|chr12:132657208-132657208|T/-|frameshift_variant;POLE|p.K325Sfs*19|1|0.27|ENSG00000177084|chr12:132676142-132676142|G/-|frameshift_variant;POLE|p.E396Sfs*16|1|0.1|ENSG00000177084|chr12:132675438-132675438|C/-|frameshift_variant	POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	481.79315185546875	2	481.792727	961.5709	0.44	0.00021199	0.42022	0.00020246	0.86023	0.00041445	481.79292889244607	36.259	0.31035	36.131	35.916	36.226	-0.12799					8	5	2	0	0	0	0.6854	1	13578	13578		24.674	5.2349	1	13597000			35915	5449	22909	23030	34573	34573					0.08857770405370502
VGLKRWVKWFT	11	Unmodified	_VGLKRWVKWFT_					0	0	0			REV__ENST00000475258.5_1_2:27258475-27258766:+|nuORF	REV__ENST00000475258.5_1_2:27258475-27258766:+|nuORF	MSMS	HCT116MG_D190212_S4	4	710.4185791015625	2	710.416614	1418.81868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.723	1	47.354	46.854	47.854	-0.36907								0	0	0	0.96141	1	17651	17651		0.35063	0	1		+		35916	15903	22910	23031	34574	34574					0.1260189927315878
VGLLASAV	8	Unmodified	_VGLLASAV_					0	0	0			REV__ENSG00000159714|ENST00000565726|ZDHHC1	REV__ENSG00000159714|ENST00000565726|ZDHHC1	MSMS	HCT116MG_D190212_S1	1	365.22772216796875	2	365.228897	728.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.014	1	28.014	27.514	28.514	0								0	0	0	0.8837	1	10189	10189		5.7604	2.8712	1		+		35917	12811	22911	23032	34575	34575					0.06815629811330837
VGLLIELN	8	Unmodified	_VGLLIELN_					0	0	0			REV__PHF20L1|p.N322Mfs*42|5|0.3|ENSG00000129292|chr8:132814664-132814664|A/-|frameshift_variant	REV__PHF20L1|p.N322Mfs*42|5|0.3|ENSG00000129292|chr8:132814664-132814664|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	870.5326538085938	1	870.529495	869.522219	0.98441	0.00085696	0.74477	0.00064835	1.7292	0.0015053	870.5299780067239	59.914	2.7992	59.642	58.309	61.109	-0.27156					83	56	2	0	0	0	0.86388	1	22493	22493		2.8892	0	1	11418000	+		35918	17413	22912	23033	34576	34576					0.08223857045618388
VGLLKTPA	8	Unmodified	_VGLLKTPA_					0	0	0		SULF2|p.N166Tfs*14|1|0.3|ENSG00000196562|chr20:47702589-47702589|T/-|frameshift_variant	SULF2|p.N166Tfs*14|1|0.3|ENSG00000196562|chr20:47702589-47702589|T/-|frameshift_variant	SULF2|p.N166Tfs*14|1|0.3|ENSG00000196562|chr20:47702589-47702589|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	399.7571716308594	2	399.757821	797.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.505	1	47.134	46.634	47.634	-0.37038								0	0	0	0.8837	1	17570	17570		0.79363	0	1				35919	18242	22913	23034	34577	34577					0.09423891736742007
VGLLLFWPHI	10	Unmodified	_VGLLLFWPHI_					0	0	0			REV__nc|ENSG00000175121|Q8TCV5|WFDC5	REV__nc|ENSG00000175121|Q8TCV5|WFDC5	MULTI-MSMS	HCT116MG_D190212_S3	3	597.8567504882812	2	597.855327	1193.6961	0.62273	0.00037231	1.2149	0.00072631	1.8376	0.0010986	597.855921794336	49.299	0.57944	48.983	48.552	49.132	-0.31596					17	10	2	0	0	0	0.88673	1	18575	18575		1.8442	0	1	3768200	+		35920	17221	22914	23035	34578	34578					0.10700062541741318
VGLLLGIST	9	Unmodified	_VGLLLGIST_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1;REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	872.568359375	1	872.545145	871.537869	0.99414	0.00086743	0.051792	4.5191E-05	1.0459	0.00091262	872.5454836999784	59.903	0.56964	59.631	59.15	59.72	-0.27156					13	10	2	0	0	0	0.26911	1	22588	22588		2.3027	0	1	4873600	+		35921	12643;15733	22915	23036	34579	34579					0.09696143562666748
VGLLLLAGRR	10	Unmodified	_VGLLLLAGRR_					0	0	0			REV__ENST00000316286.13_1_7:148768550-148768973:-|nuORF	REV__ENST00000316286.13_1_7:148768550-148768973:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	534.3562622070312	2	534.356025	1066.6975	0.52394	0.00027997	0.029682	1.5861E-05	0.55362	0.00029583	534.3558887570468	60.274	1.6023	60.12	59.801	61.404	-0.15441					62	30	3	0	0	0	0.88752	1	23829	23829		1.6526	1.0511	1	64986000	+		35922	14861	22916	23037	34580	34580					0.16681696630507759
VGLLPEPL	8	Unmodified	_VGLLPEPL_					0	0	0			REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF	REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	419.2569885253906	2	419.257654	836.500755	-0.047787	-2.0035E-05	-1.2053	-0.00050531	-1.253	-0.00052535	419.25702898756	26.996	0.20783	26.996	26.865	27.073	0					5	3	2	0	0	0	0.81097	1	9800	9800		10.183	0	1	18152000	+		35923	16500	22917	23038	34581	34581					0.0759647201689404
VGLLQLRHLR	10	Unmodified	_VGLLQLRHLR_					0	0	0			REV__nc|ENSG00000105219|Q9H8S5-2|CCNP	REV__nc|ENSG00000105219|Q9H8S5-2|CCNP	MSMS	HCT116MG_D190212_S3	3	401.9233703613281	3	402.259413	1203.75641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.627	1	15.712	15.212	16.212	0.085423								0	0	0	0.96183	1	5127	5127		2.086	0.17963	1		+		35924	11240	22918	23039	34582	34582					0.16268172924810642
VGLLSVAA	8	Unmodified	_VGLLSVAA_					0	0	0		nc|ENSG00000164935|Q9H295-2|DCSTAMP;DCSTAMP|p.M456*|1|0.36|ENSG00000164935|chr8:104356148-104356148|A/-|frameshift_variant;ENSG00000164935|ENST00000297581|DCSTAMP	nc|ENSG00000164935|Q9H295-2|DCSTAMP	nc|ENSG00000164935|Q9H295-2|DCSTAMP	MSMS	HCT116MG_D190212_S2	2	365.5208740234375	2	365.228897	728.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.528	1	19.158	18.658	19.658	-0.3695								0	0	0	0.8837	1	6776	6776		2.8892	0	1				35925	652	22919	23040	34583	34583					0.06815629811319468
VGLPGFGP	8	Unmodified	_VGLPGFGP_					0	0	0			REV__ENST00000585141.5_1_17:62481823-62493086:-|nuORF	REV__ENST00000585141.5_1_17:62481823-62493086:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	372.2855224609375	2	372.207964	742.401375	0.19601	7.2955E-05	-0.47727	-0.00017764	-0.28126	-0.00010469	372.20768039419397	33.87	0.77773	33.486	33.051	33.829	-0.38426					24	15	2	0	0	0	0.33364	1	12369	12369		0.79363	0	1	4002200	+		35926	14401	22920	23041	34584	34584					0.019870741228032784
VGLPPREPVLS	11	Unmodified	_VGLPPREPVLS_					0	0	0		ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	MSMS	HCT116MG_D190212_S1	1	582.340576171875	2	582.342781	1162.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.495	1	47.495	46.995	47.995	0								0	0	0	0.95581	1	18047	18047		3.2813	0.28607	1				35927	2780	22921	23042	34585	34585					0.0961796294850501
VGLPVLKTRPL	11	Unmodified	_VGLPVLKTRPL_					0	0	0			REV__nc|ENSG00000156983|P55201-4|BRPF1	REV__nc|ENSG00000156983|P55201-4|BRPF1	MSMS	HCT116MG_D190212_S3	3	596.89111328125	2	596.892441	1191.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.009	1	39.707	39.207	40.207	-0.30137								0	0	0	0.95521	1	14839	14839		3.5965	1.9439	1		+		35928	12738	22922	23043	34586	34586					0.1821140563326935
VGLRLKGAP	9	Unmodified	_VGLRLKGAP_					0	0	0			REV__ENST00000594990.5_2_19:39936245-39943996:+|nuORF	REV__ENST00000594990.5_2_19:39936245-39943996:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	455.79522705078125	2	455.795269	909.575986	-0.005239	-2.3879E-06	0.009213	4.1992E-06	0.003974	1.8113E-06	455.7952466221234	19.626	0.20877	19.626	19.495	19.704	0					5	3	2	0	0	0	0.7005	1	6845	6845		5.2307	0	1	3416400	+		35929	15069	22923	23044	34587	34587					0.1175807426798201
VGLRRLRRC	9	Unmodified	_VGLRRLRRC_					0	0	0		ENST00000302558.7_1_2:113191071-113191152:-|nuORF;ENST00000393283.5_1_2:110551884-110551998:+|nuORF	ENST00000302558.7_1_2:113191071-113191152:-|nuORF	ENST00000302558.7_1_2:113191071-113191152:-|nuORF	MSMS	HCT116MG_D190212_S1	1	376.9014892578125	3	376.901343	1127.6822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.162	1	11.162	10.662	11.662	0								0	0	0	0.77025	1	3488	3488		0	0	1				35930	7011	22924	23045	34588	34588					0.12346506561675596
VGLRRTGP	8	Unmodified	_VGLRRTGP_					0	0	0		ENST00000485822.1_1_9:116343338-116343629:+|nuORF	ENST00000485822.1_1_9:116343338-116343629:+|nuORF	ENST00000485822.1_1_9:116343338-116343629:+|nuORF	MSMS	HCT116MG_D190212_S1	1	428.26092529296875	2	428.261594	854.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.846	1	15.846	15.346	16.346	0								0	0	0	0.8837	1	5293	5293		14.582	0	1				35931	8288	22925	23046	34589	34589					0.0755604405703707
VGLRSLVK	8	Unmodified	_VGLRSLVK_					0	0	0			REV__ENSG00000154277|ENST00000284440|UCHL1	REV__ENSG00000154277|ENST00000284440|UCHL1	MSMS	HCT116MG_D190212_S1	1	436.2896728515625	2	436.28982	870.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.962	1	30.962	30.462	31.462	0								0	0	0	0.82692	1	11375	11375		20.454	1.1966	1		+		35932	12675	22926	23047	34590	34590					0.12462671893706556
VGLSAAGY	8	Unmodified	_VGLSAAGY_					0	0	0		tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	tr|U7SJQ2|U7SJQ2_FUSNUHemechaperoneHemWOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02051PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	369.19476318359375	2	369.195054	736.375555	-0.14499	-5.3528E-05	-0.23918	-8.8304E-05	-0.38417	-0.00014183	369.1949022305661	24.593	0.20917	24.213	24.082	24.292	-0.38003					5	3	2	0	0	0	0.84415	1	8829	8829		6.3541	0.59368	1	8280500			35933	18320	22927	23048	34591	34591					-0.003178201194828034
VGLSLGVP	8	Unmodified	_VGLSLGVP_					0	0	0		EDIL3|p.I289*|1|0.41|ENSG00000164176|chr5:84064788-84064788|G/-|frameshift_variant;nc|ENSG00000164176|O43854-2|EDIL3;ENSG00000164176|ENST00000296591|EDIL3	EDIL3|p.I289*|1|0.41|ENSG00000164176|chr5:84064788-84064788|G/-|frameshift_variant	EDIL3|p.I289*|1|0.41|ENSG00000164176|chr5:84064788-84064788|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	371.1012268066406	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.608	1	24.524	24.024	25.024	-0.083694								0	0	0	0.8837	1	8747	8747		11.114	0	1				35934	756	22928	23049	34592	34592					0.06263629811326155
VGLSPECD	8	Unmodified	_VGLSPECD_					0	0	0		SLFN14|p.F877V|1|0.27|ENSG00000236320|chr17:35548349-35548349|A/C|missense_variant	SLFN14|p.F877V|1|0.27|ENSG00000236320|chr17:35548349-35548349|A/C|missense_variant	SLFN14|p.F877V|1|0.27|ENSG00000236320|chr17:35548349-35548349|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	410.17999267578125	2	410.181286	818.348019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.386	1	14.466	13.966	14.966	0.079683								0	0	0	0.8837	1	4626	4626		2.8892	0	1				35935	18170	22929	23050	34593	34593					-0.06842091442024412
VGLSVLLLKKN	11	Unmodified	_VGLSVLLLKKN_					0	0	0		ENST00000551219.5_1_12:71092119-71148195:-|nuORF	ENST00000551219.5_1_12:71092119-71148195:-|nuORF	ENST00000551219.5_1_12:71092119-71148195:-|nuORF	MSMS	HCT116MG_D190212_S4	4	395.2652282714844	3	395.263941	1182.76999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.789	1	32.41	31.91	32.91	-0.37924								0	0	0	0.96141	1	11956	11956		0.094841	0	1				35936	8755	22930	23051	34594	34594					0.18591985913440112
VGLTELKL	8	Unmodified	_VGLTELKL_					0	0	0		FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant;FAT3|p.P4078Rfs*36|1|0.42|ENSG00000165323|chr11:92883135-92883135|C/-|frameshift_variant;FAT3|p.V4210Cfs*6|1|0.05|ENSG00000165323|chr11:92889212-92889213|-/T|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant	FAT3|p.V4082Rfs*13|1|0.23|ENSG00000165323|chr11:92883145-92883146|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	436.7746276855469	2	436.776211	871.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.907	1	49.907	49.407	50.407	0								0	0	0	0.8837	1	19029	19029		5.7604	0	1				35937	4765	22931	23052	34595	34595					0.09696143562666748
VGLTLAAP	8	Unmodified	_VGLTLAAP_					0	0	0			REV__ENST00000368720.6_2_1:153508291-153508594:-|nuORF	REV__ENST00000368720.6_2_1:153508291-153508594:-|nuORF	MSMS	HCT116MG_D190212_S2	2	371.2278137207031	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.194	1	41.126	40.626	41.626	-0.068199								0	0	0	0.8837	1	15557	15557		2.5775	0	1		+		35938	15137	22932	23053	34596	34596					0.06263629811314786
VGLTLAAP	8	Unmodified	_VGLTLAAP_					0	0	0			REV__ENST00000368720.6_2_1:153508291-153508594:-|nuORF	REV__ENST00000368720.6_2_1:153508291-153508594:-|nuORF	MSMS	HCT116MG_D190212_S3	3	371.228759765625	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.393	1	26.244	25.744	26.744	-0.14924								0	0	0	0.8837	1	9466	9466		15.768	5.5848	1		+		35939	15137	22932	23053	34597	34597					0.06263629811314786
VGLTLKRNPMS	11	Unmodified	_VGLTLKRNPMS_					0	0	0		ENSG00000171295|ENST00000304060|ZNF440	ENSG00000171295|ENST00000304060|ZNF440	ENSG00000171295|ENST00000304060|ZNF440	MSMS	HCT116MG_D190212_S4	4	608.3492431640625	2	608.34754	1214.68053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.663	1	38.282	37.782	38.782	-0.38163								0	0	0	0.95581	1	14178	14178		3.2813	0	1				35940	5186	22933	23054	34598	34598					0.0817740796239832
VGLTPRRRKT	10	Unmodified	_VGLTPRRRKT_					0	0	0			REV__ENSG00000100296|ENST00000490103|THOC5	REV__ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	HCT116MG_D190212_S1	1	592.3724365234375	2	592.372738	1182.73092	0.56421	0.00033422	-0.68623	-0.0004065	-0.12202	-7.2279E-05	592.3721836540135	51.73	0.57265	51.73	51.5	52.073	0					26	10	4	0	0	0	0.87801	1	19753	19753		3.9444	0	1	159810000	+		35941	11076	22934	23055	34599	34599					0.1468669840239727
VGLTRRASP	9	Unmodified	_VGLTRRASP_					0	0	0		ENST00000376062.6_1_20:30252428-30253052:-|nuORF	ENST00000376062.6_1_20:30252428-30253052:-|nuORF	ENST00000376062.6_1_20:30252428-30253052:-|nuORF	MSMS	HCT116MG_D190212_S4	4	478.78570556640625	2	478.785433	955.556313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.7	1	48.333	47.833	48.833	-0.36728								0	0	0	0.7689	1	18043	18043		4.756	0.42677	1				35942	7513	22935	23056	34600	34600					0.0767569825721921
VGLTRRGQ	8	Unmodified	_VGLTRRGQ_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;FN1|p.S1791Rfs*9|1|0.07|ENSG00000115414|chr2:215378239-215378239|A/-|frameshift_variant;FN1|p.L1714*|1|0.2|ENSG00000115414|chr2:215380832-215380832|G/-|frameshift_variant	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	HCT116MG_D190212_S1	1	443.2728576660156	2	443.764501	885.514448	-0.080821	-3.5865E-05	0.82631	0.00036669	0.74549	0.00033082	443.76472164413593	50.071	0.56694	50.071	49.647	50.214	0					16	10	3	0	0	0	0.33021	1	19139	19139		2.5775	0	1	36426000			35943	2466	22936	23057	34601	34601					0.06711142568701689
VGLVDNPLKI	10	Unmodified	_VGLVDNPLKI_					0	0	0		ENST00000559238.5_1_15:41060140-41072106:-|nuORF;ENSG00000104129|ENST00000220496|DNAJC17	ENST00000559238.5_1_15:41060140-41072106:-|nuORF	ENST00000559238.5_1_15:41060140-41072106:-|nuORF	MSMS	HCT116MG_D190212_S3	3	534.3284301757812	2	534.326599	1066.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.637	1	55.35	54.85	55.85	-0.28773								0	0	0	0.93576	1	21105	21105		7.9102	1.187	1				35944	1917	22937	23058	34602	34602					0.10799175545503203
VGLVEEHVDPV	11	Unmodified	_VGLVEEHVDPV_					0	0	0			REV__ENSG00000013364|ENST00000357402|MVP	REV__ENSG00000013364|ENST00000357402|MVP	MSMS	HCT116MG_D190212_S3	3	596.8143920898438	2	596.814053	1191.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.897	1	56.618	56.118	57.118	-0.27913								0	0	0	0.95521	1	21610	21610		3.5965	0	1		+		35945	10533	22938	23059	34603	34603					0.025410759522856097
VGLVLKIIL	9	Unmodified	_VGLVLKIIL_					0	0	0			REV__tr|U7STS2|U7STS2_FUSNUDAACSfamilydicarboxylate/aminoacid:cation(Na+orH+)symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01168PE=4SV=1	REV__tr|U7STS2|U7STS2_FUSNUDAACSfamilydicarboxylate/aminoacid:cation(Na+orH+)symporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01168PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	484.3497619628906	2	484.349346	966.684139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.708	1	21.49	20.99	21.99	-0.21832								0	0	0	0.77008	1	7510	7510		0.6015	0	1		+		35946	17808	22939	23060	34604	34604					0.1994644579855276
VGLWLPVF	8	Unmodified	_VGLWLPVF_					0	0	0			REV__ENST00000546151.5_1_11:61125276-61129264:-|nuORF	REV__ENST00000546151.5_1_11:61125276-61129264:-|nuORF	MSMS	HCT116MG_D190212_S3	3	465.7777404785156	2	465.776014	929.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.936	1	42.631	42.131	43.131	-0.30472								0	0	0	0.8837	1	16010	16010		2.8892	0	1		+		35947	16398	22940	23061	34605	34605					0.06988768633470954
VGLWPLCL	8	Unmodified	_VGLWPLCL_					0	0	0		ENST00000396655.6_1_12:4763520-4764011:+|nuORF	ENST00000396655.6_1_12:4763520-4764011:+|nuORF	ENST00000396655.6_1_12:4763520-4764011:+|nuORF	MSMS	HCT116MG_D190212_S4	4	450.7543640136719	2	450.754224	899.493896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.513	1	44.14	43.64	44.64	-0.37332								0	0	0	0.8837	1	16402	16402		2.8892	0	1				35948	7655	22941	23062	34606	34606					0.040128358646711604
VGLYTITV	8	Unmodified	_VGLYTITV_					0	0	0		DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant;ENSG00000189186|ENST00000451261|DCAF8L2	DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant	DCAF8L2|p.V527Cfs*7|1|0.39|ENSG00000189186|chrX:27748474-27748474|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	433.20709228515625	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.806	1	47.806	47.306	48.306	0								0	0	0	0.8837	1	18174	18174		5.7604	0	1				35949	646	22942	23063	34607	34607					0.05800168154280527
VGMGHCEC	8	Unmodified	_VGMGHCEC_					0	0	0			REV__ENST00000567535.5_1_15:75287957-75305364:+|nuORF	REV__ENST00000567535.5_1_15:75287957-75305364:+|nuORF	MSMS	HCT116MG_D190212_S4	4	417.66949462890625	2	418.148409	834.282265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.495	1	12.326	11.826	12.826	-0.16903								0	0	0	0.8837	1	3883	3883		0.79363	0	1		+		35950	16552	22943	23064	34608	34608					-0.14150527160222737
VGMILPHP	8	Unmodified	_VGMILPHP_					0	0	0			REV__ENST00000559016.1_1_15:49426483-49429634:-|nuORF	REV__ENST00000559016.1_1_15:49426483-49429634:-|nuORF	MSMS	HCT116MG_D190212_S3	3	432.2434997558594	2	432.244024	862.473494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.266	1	29.044	28.544	29.544	-0.22195								0	0	0	0.8837	1	10625	10625		2.8892	0	1		+		35951	10281	22944	23065	34609	34609					0.03675665204866618
VGMRKPLRY	9	Unmodified	_VGMRKPLRY_					0	0	0		ENST00000600534.1_1_19:59084484-59085060:+|nuORF	ENST00000600534.1_1_19:59084484-59085060:+|nuORF	ENST00000600534.1_1_19:59084484-59085060:+|nuORF	MSMS	HCT116MG_D190212_S3	3	560.3275146484375	2	560.326411	1118.63827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.085	1	40.784	40.284	41.284	-0.30185								0	0	0	0.76902	1	15273	15273		4.3292	0.38484	1				35952	9086	22945	23066	34610	34610					0.08369477344672305
VGMVVGLV	8	Unmodified	_VGMVVGLV_					0	0	0		ENSG00000165682|ENST00000298527|CLEC1B;CLEC1B|p.C216Lfs*12|1|0.04|ENSG00000165682|chr12:9993186-9993187|-/TGGAGTTATTTTTA|frameshift_variant	ENSG00000165682|ENST00000298527|CLEC1B	ENSG00000165682|ENST00000298527|CLEC1B	MSMS	HCT116MG_D190212_S3	3	387.23358154296875	2	387.233125	772.451696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.152	1	29.902	29.402	30.402	-0.24946								0	0	0	0.8837	1	10978	10978		2.8892	0	1				35953	476	22946	23067	34611	34611					0.05636860456309023
VGMVVGLV	8	Unmodified	_VGMVVGLV_					0	0	0		ENSG00000165682|ENST00000298527|CLEC1B;CLEC1B|p.C216Lfs*12|1|0.04|ENSG00000165682|chr12:9993186-9993187|-/TGGAGTTATTTTTA|frameshift_variant	ENSG00000165682|ENST00000298527|CLEC1B	ENSG00000165682|ENST00000298527|CLEC1B	MSMS	HCT116MG_D190212_S4	4	387.2337646484375	2	387.233125	772.451696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.148	1	29.791	29.291	30.291	-0.3571								0	0	0	0.8837	1	10917	10917		2.8892	0	1				35954	476	22946	23067	34612	34612					0.05636860456309023
VGMYKVHPPM	10	Unmodified	_VGMYKVHPPM_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MSMS	HCT116MG_D190212_S4	4	579.7911376953125	2	579.793555	1157.57256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.138	1	55.832	55.332	56.332	-0.30626								0	0	0	0.93854	1	21037	21037		7.2892	1.0834	1				35955	3773	22947	23068	34613	34613					7.320107442865265E-05
VGNGGVLK	8	Unmodified	_VGNGGVLK_					0	0	0		ST3GAL6|p.T131A|1|0.34|ENSG00000064225|chr3:98785000-98785000|A/G|missense_variant;ST3GAL6|p.K130R|1|0.39|ENSG00000064225|chr3:98784998-98784998|A/G|missense_variant;ST3GAL6|p.Y167Ifs*18|2|0.29|ENSG00000064225|chr3:98788098-98788098|T/-|frameshift_variant;ENSG00000064225|ENST00000483910|ST3GAL6	ST3GAL6|p.T131A|1|0.34|ENSG00000064225|chr3:98785000-98785000|A/G|missense_variant	ST3GAL6|p.T131A|1|0.34|ENSG00000064225|chr3:98785000-98785000|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	372.2224426269531	2	372.224146	742.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.56	1	23.312	22.812	23.812	-0.24775								0	0	0	0.8837	1	8255	8255		0.79363	0	1				35956	1137	22948	23069	34614	34614					0.05221861525797067
VGNKPRPR	8	Unmodified	_VGNKPRPR_					0	0	0		ENSG00000100056|ENST00000252137|ESS2;ENST00000472073.1_1_22:19121711-19131632:-|nuORF	ENSG00000100056|ENST00000252137|ESS2	ENSG00000100056|ENST00000252137|ESS2	MSMS	HCT116MG_D190212_S1	1	462.2807922363281	2	462.280318	922.546083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.542	1	32.542	32.042	33.042	0								0	0	0	0.8837	1	12012	12012		2.3027	0	1				35957	1659	22949	23070	34615	34615					0.0817113532265239
VGNKSFGS	8	Unmodified	_VGNKSFGS_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	HCT116MG_D190212_S2	2	398.2032470703125	2	398.20341	794.392267	0.26157	0.00010416	-0.22518	-8.9668E-05	0.036389	1.449E-05	398.2032325905289	27.443	0.30982	27.101	26.933	27.243	-0.34201					11	5	3	0	0	0	0.67912	1	9979	9979		25.399	0.72543	1	17746000	+		35958	11626	22950	23071	34616	34616					-0.013153192335153108
VGNKSFGS	8	Unmodified	_VGNKSFGS_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	398.20341	794.392267	0.26157	0.00010416	-0.22518	-8.9668E-05	0.036389	1.449E-05	398.2032325905289	27.443	0.30982	27.101	26.933	27.243	-0.34201	0	0	NaN	25.399	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17746000	+		35959	11626	22950	23071							-0.013153192335153108
VGPAALDEPR	10	Unmodified	_VGPAALDEPR_					0	0	0			REV__ENST00000542215.5_1_X:41193930-41196670:+|nuORF	REV__ENST00000542215.5_1_X:41193930-41196670:+|nuORF	MSMS	HCT116MG_D190212_S2	2	512.7822265625	2	512.774731	1023.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.876	1	11.586	11.086	12.086	-0.28953								0	0	0	0.96453	1	3853	3853		1.4819	0.68827	1		+		35960	16378	22951	23072	34617	34617					0.024082684378413433
VGPAAPDAG	9	Unmodified	_VGPAAPDAG_					0	0	0		ENST00000357203.7_1_3:50604919-50605126:-|nuORF	ENST00000357203.7_1_3:50604919-50605126:-|nuORF	ENST00000357203.7_1_3:50604919-50605126:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	754.373291015625	1	754.372995	753.365718	0.60934	0.00045967	0.22795	0.00017196	0.83729	0.00063163	754.373235554224	24.971	0.72906	24.865	24.579	25.308	-0.10618					23	13	2	0	0	0	0.10839	1	8900	8900		56.541	1.7677	1	5067100			35961	7307	22952	23073	34618	34618					-0.020830081248618626
VGPADDGPA	9	Unmodified	_VGPADDGPA_					0	0	0		GTF3C4|p.F236Lfs*60|1|0.15|ENSG00000125484|chr9:132678324-132678324|T/-|frameshift_variant;ENSG00000125484|ENST00000372146|GTF3C4	GTF3C4|p.F236Lfs*60|1|0.15|ENSG00000125484|chr9:132678324-132678324|T/-|frameshift_variant	GTF3C4|p.F236Lfs*60|1|0.15|ENSG00000125484|chr9:132678324-132678324|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	798.3622436523438	1	798.362824	797.355547	0.85508	0.00068267	-0.073567	-5.8733E-05	0.78152	0.00062393	798.3625416158883	19.2	1.9113	19.013	17.936	19.847	-0.18674					57	36	2	0	0	0	0.22969	1	6796	6796		38.151	0	1	4962200			35962	2888	22953	23074	34619	34619					-0.05123615850095575
VGPADPAG	8	Unmodified	_VGPADPAG_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	684.2034912109375	1	683.335881	682.328604	0.62083	0.00042423	0.34509	0.00023581	0.96592	0.00066005	683.3359696910564	18.886	1.2971	18.704	17.837	19.134	-0.18196					43	24	2	0	0	0	0.15305	1	6410	6410		82.939	23.144	1	5580300			35963	1230	22954	23075	34620	34620					-0.02526679670620524
VGPADPAG	8	Unmodified	_VGPADPAG_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	683.335881	682.328604	0.92952	0.00063517	0.027984	1.9122E-05	0.9575	0.00065429	683.3357471771637	18.728	1.301	18.797	17.938	19.239	0.069159	0.069844	-0.00015965	NaN	82.939	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10165000			35964	1230	22954	23075							-0.02526679670620524
VGPADPAGD	9	Unmodified	_VGPADPAGD_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	399.68511962890625	2	399.68505	797.355547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.868	1	18.937	18.437	19.437	0.069159								0	0	0	0.24084	1	6435	6435		44.407	0	1				35965	1230	22955	23076	34621	34621					-0.05123615850095575
VGPADPAGD	9	Unmodified	_VGPADPAGD_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	798.363037109375	1	798.362824	797.355547	0.85508	0.00068267	-0.073567	-5.8733E-05	0.78152	0.00062393	798.3625416158883	19.2	1.9113	19.013	17.936	19.847	-0.18674					57	36	2	0	0	0	0.058138	1	6495	6495		70.716	0	1	4962200			35966	1230	22955	23076	34622	34622					-0.05123615850095575
VGPADPAGD	9	Unmodified	_VGPADPAGD_					0	0	0		PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant;PHRF1|p.T1126Pfs*73|1|0.36|ENSG00000070047|chr11:608827-608827|C/-|frameshift_variant;PHRF1|p.E1225Kfs*62|1|0.36|ENSG00000070047|chr11:609125-609125|G/-|frameshift_variant;PHRF1|p.L1393Cfs*8|1|0.38|ENSG00000070047|chr11:609628-609628|C/-|frameshift_variant;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	PHRF1|p.P938Qfs*23|2|0.45|ENSG00000070047|chr11:608263-608263|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	399.6849060058594	2	399.68505	797.355547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.104	1	18.917	18.417	19.417	-0.18674								0	0	0	0.038654	1	6457	6457		74.423	0	1				35967	1230	22955	23076	34623	34623					-0.05123615850095575
VGPAGAVGPR	10	Unmodified	_VGPAGAVGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	440.7530822753906	2	440.753601	879.49265	0.14039	6.1876E-05	-0.2175	-9.5864E-05	-0.077114	-3.3988E-05	440.75339773941107	23.298	0.72929	23.258	22.927	23.656	-0.03968					22	13	2	0	0	0	0.042873	1	8210	8210		92.491	35.02	1	5765000			35968	4715	22956	23077	34624	34624					0.04808337820145425
VGPAGAVGPR	10	Unmodified	_VGPAGAVGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	440.75311279296875	2	440.753601	879.49265	0.18588	8.1926E-05	0.0063287	2.7894E-06	0.19221	8.4715E-05	440.7535200997403	23.524	0.57211	23.277	23.063	23.636	-0.24775					21	10	3	0	0	0	0.042873	1	8219	8219		92.491	44.146	1	4947700			35969	4715	22956	23077	34625	34625					0.04808337820145425
VGPAGAVGPR	10	Unmodified	_VGPAGAVGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MSMS	HCT116MG_D190212_S4	4	440.7534484863281	2	440.753601	879.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.099	1	24.82	24.32	25.32	-0.27958								0	0	0	0.76907	1	8878	8878		32.786	0.4802	1				35970	4715	22956	23077	34626	34626					0.04808337820145425
VGPAGAVGPR	10	Unmodified	_VGPAGAVGPR_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000478215.1_1_7:94054867-94055854:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	440.753601	879.49265	0.2066	9.1058E-05	-0.31364	-0.00013824	-0.10704	-4.718E-05	440.7535291781014	23.745	0.52004	23.362	23.143	23.663	-0.38324	0.062791	-0.00017343	NaN	92.491	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5284900			35971	4715	22956	23077							0.04808337820145425
VGPAPGPY	8	Unmodified	_VGPAPGPY_					0	0	0		ALX3|p.T236Mfs*95|1|0.2|ENSG00000156150|chr1:110061451-110061451|G/-|frameshift_variant;ENSG00000156150|ENST00000647563|ALX3	ALX3|p.T236Mfs*95|1|0.2|ENSG00000156150|chr1:110061451-110061451|G/-|frameshift_variant	ALX3|p.T236Mfs*95|1|0.2|ENSG00000156150|chr1:110061451-110061451|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	757.3886108398438	1	757.387916	756.38064	0.96573	0.00073143	-0.15185	-0.00011501	0.81388	0.00061642	757.3876114509395	32.654	0.26067	32.443	32.273	32.534	-0.21135					7	4	2	0	0	0	0.75115	1	12105	12105		17.087	0	1	19336000			35972	119	22957	23078	34627	34627					-0.007295162568652813
VGPAPHLA	8	Unmodified	_VGPAPHLA_					0	0	0			REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF	REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	381.21868896484375	2	381.218863	760.423173	-0.25767	-9.8229E-05	0.20385	7.7711E-05	-0.053823	-2.0518E-05	381.21881687284576	32.51	0.36458	32.28	32.098	32.463	-0.23009					16	6	3	0	0	0	0.75115	1	12016	12016		17.087	0	1	58784000	+		35973	14693	22958	23079	34628	34628					0.033378788713775975
VGPARPGPAGP	11	Unmodified	_VGPARPGPAGP_					0	0	0		ENST00000493483.5_1_1:33799498-33815372:-|nuORF;ENST00000485928.5_1_1:33797943-33815375:-|nuORF	ENST00000493483.5_1_1:33799498-33815372:-|nuORF	ENST00000493483.5_1_1:33799498-33815372:-|nuORF	MSMS	HCT116MG_D190212_S2	2	488.2701416015625	2	488.272158	974.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.921	1	29.62	29.12	30.12	-0.30095								0	0	0	0.93181	1	10980	10980		15.847	0	1				35974	8290	22959	23080	34629	34629					0.04148009365906091
VGPARPGPAGP	11	Unmodified	_VGPARPGPAGP_					0	0	0		ENST00000493483.5_1_1:33799498-33815372:-|nuORF;ENST00000485928.5_1_1:33797943-33815375:-|nuORF	ENST00000493483.5_1_1:33799498-33815372:-|nuORF	ENST00000493483.5_1_1:33799498-33815372:-|nuORF	MSMS	HCT116MG_D190212_S3	3	488.2699279785156	2	488.272158	974.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.02	1	29.783	29.283	30.283	-0.23655								0	0	0	0.93181	1	10926	10926		15.847	1.2655	1				35975	8290	22959	23080	34630	34630					0.04148009365906091
VGPASRNS	8	Unmodified	_VGPASRNS_					0	0	0		ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	ENST00000469841.5_1_3:57131519-57204269:-|nuORF	MSMS	HCT116MG_D190212_S3	3	394.2072448730469	2	394.206484	786.398415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.027	1	22.028	21.528	22.528	0.00074577								0	0	0	0.8837	1	7706	7706		9.3474	1.4373	1				35976	3880	22960	23081	34631	34631					-0.003328010019913563
VGPDSPPP	8	Unmodified	_VGPDSPPP_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-4|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-4|OSCAR	MSMS	HCT116MG_D190212_S4	4	383.1922912597656	2	383.192511	764.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.522	1	27.2	26.7	27.7	-0.32157								0	0	0	0.8837	1	9856	9856		11.114	0	1		+		35977	17210	22961	23082	34632	34632					-0.021141239820963165
VGPEAEGPR	9	Unmodified	_VGPEAEGPR_					0	0	0		ENST00000560945.1_1_15:64443974-64444139:+|nuORF;nc|ENSG00000157734|Q96L94-2|SNX22;ENST00000561334.1_1_15:64443974-64444822:+|nuORF;ENST00000557789.5_1_15:64443974-64446347:+|nuORF;ENSG00000157734|ENST00000325881|SNX22	ENST00000560945.1_1_15:64443974-64444139:+|nuORF	ENST00000560945.1_1_15:64443974-64444139:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	911.390869140625	1	911.458121	910.450845	0.68134	0.00062101	-0.58181	-0.0005303	0.099525	9.0713E-05	911.4571647432831	22.187	0.20825	22.187	22.042	22.25	0.00074577					5	3	2	0	0	0	0.21838	1	7731	7731		26.884	9.9414	1	2538400			35978	4341	22962	23083	34633	34633					-0.007962626590369837
VGPEPAGGD	9	Unmodified	_VGPEPAGGD_					0	0	0			REV__ENST00000418034.1_2_1:11865666-11865870:-|nuORF	REV__ENST00000418034.1_2_1:11865666-11865870:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	798.3634643554688	1	798.362824	797.355547	0.73567	0.00058733	0.078064	6.2323E-05	0.81373	0.00064965	798.362730875754	19.092	1.9266	19.161	18.146	20.072	0.069159					55	36	2	0	0	0	0.071351	1	6489	6489		64.236	0	1	6770500	+		35979	15494	22963	23084	34634	34634					-0.051236158500842066
VGPESSPYLSR	11	Unmodified	_VGPESSPYLSR_					0	0	0		PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant;nc|ENSG00000067840|Q76G19-2|PDZD4;nc|ENSG00000067840|Q76G19|PDZD4;ENSG00000067840|ENST00000393758|PDZD4	PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant	PDZD4|p.L601Pfs*18|1|0.28|ENSG00000067840|chrX:153803861-153803862|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	596.30419921875	2	596.303852	1190.59315	0.55189	0.0003291	-0.14687	-8.7578E-05	0.40503	0.00024152	596.3036858589874	19.458	1.1975	19.517	19.126	20.323	0.05983					29	22	2	0	0	0	0.6977	1	6902	6902		22.658	1.1211	1	2844300			35980	1192	22964	23085	34635	34635					0.0054790529247839
VGPFGSVA	8	Unmodified	_VGPFGSVA_					0	0	0		POM121C|p.A958V|1|0.07|ENSG00000272391|chr7:75418887-75418887|G/A|missense_variant	POM121C|p.A958V|1|0.07|ENSG00000272391|chr7:75418887-75418887|G/A|missense_variant	POM121C|p.A958V|1|0.07|ENSG00000272391|chr7:75418887-75418887|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	367.1959533691406	2	367.197596	732.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.707	1	28.501	28.001	29.001	-0.20593								0	0	0	0.8837	1	10400	10400		5.7604	0	1				35981	9763	22965	23086	34636	34636					0.0037448374313271415
VGPFIRQL	8	Unmodified	_VGPFIRQL_					0	0	0			REV__ENSG00000197608|ENST00000594440|ZNF841	REV__ENSG00000197608|ENST00000594440|ZNF841	MSMS	HCT116MG_D190212_S1	1	465.2806396484375	2	465.281995	928.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.703	1	18.703	18.203	19.203	0								0	0	0	0.8837	1	6444	6444		6.3541	0.59368	1		+		35982	14082	22966	23087	34637	34637					0.08230385376646154
VGPFLAPRRL	10	Unmodified	_VGPFLAPRRL_					0	0	0			REV__ENST00000471856.1_1_1:146649692-146651075:+|nuORF	REV__ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	562.784912109375	2	563.3482	1124.68185	0.29953	0.00016874	-1.3665	-0.00076982	-1.067	-0.00060108	563.84868320988	53.465	0.25654	53.275	53.121	53.377	-0.1894					6	4	2	0	0	0	0.30812	1	20516	20516		11.64	0.81637	1	12010000	+		35983	15877	22967	23088	34638	34638					0.12449410113435988
VGPFLAPRRL	10	Unmodified	_VGPFLAPRRL_					0	0	0			REV__ENST00000471856.1_1_1:146649692-146651075:+|nuORF	REV__ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	563.3482	1124.68185	0.49214	0.00027725	-1.149	-0.00064728	-0.65684	-0.00037003	563.347324293476	53.201	0.15348	53.201	53.102	53.255	0	-0.037175	0.00011316	NaN	11.64	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7571900	+		35984	15877	22967	23088							0.12449410113435988
VGPGMNMAP	9	Unmodified	_VGPGMNMAP_					0	0	0			REV__ENST00000601919.5_1_19:18542647-18543480:+|nuORF	REV__ENST00000601919.5_1_19:18542647-18543480:+|nuORF	MSMS	HCT116MG_D190212_S3	3	437.20172119140625	2	437.201499	872.388444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.852	1	29.616	29.116	30.116	-0.23655								0	0	0	0.76611	1	10859	10859		14.582	3.4672	1		+		35985	11926	22968	23089	34639	34639					-0.0528544832325224
VGPGWEDG	8	Unmodified	_VGPGWEDG_					0	0	0		ENST00000431180.5_1_3:47058436-47058586:-|nuORF	ENST00000431180.5_1_3:47058436-47058586:-|nuORF	ENST00000431180.5_1_3:47058436-47058586:-|nuORF	MSMS	HCT116MG_D190212_S3	3	408.6786193847656	2	408.679768	815.344983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.669	1	12.731	12.231	13.231	0.06246								0	0	0	0.8837	1	3969	3969		0.79363	0	1				35986	7852	22969	23090	34640	34640					-0.07007598504526413
VGPHARLL	8	Unmodified	_VGPHARLL_					0	0	0			REV__ENSG00000187773|ENST00000343998|DIPK1C	REV__ENSG00000187773|ENST00000343998|DIPK1C	MULTI-MSMS	HCT116MG_D190212_S3	3	862.5263671875	1	862.525747	861.518471	0.99812	0.0008609	-0.41092	-0.00035443	0.58719	0.00050647	862.5250030403934	60.339	3.2084	60.087	58.06	61.268	-0.25233					110	61	2	0	0	0	0.86388	1	22394	22394		2.8892	2.0956	1	14102000	+		35987	13933	22970	23091	34641	34641					0.08217232062418134
VGPHLCIP	8	Unmodified	_VGPHLCIP_					0	0	0		nc|ENSG00000070748|P28329-2|CHAT	nc|ENSG00000070748|P28329-2|CHAT	nc|ENSG00000070748|P28329-2|CHAT	MSMS	HCT116MG_D190212_S4	4	418.2283935546875	2	418.228374	834.442194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.941	1	26.63	26.13	27.13	-0.3114								0	0	0	0.8837	1	9621	9621		2.8892	0	1				35988	9378	22971	23092	34642	34642					0.018350921707678935
VGPIRRGG	8	Unmodified	_VGPIRRGG_					0	0	0		ENST00000285605.7_1_10:99474680-99474815:+|nuORF	ENST00000285605.7_1_10:99474680-99474815:+|nuORF	ENST00000285605.7_1_10:99474680-99474815:+|nuORF	MSMS	HCT116MG_D190212_S3	3	406.24859619140625	2	406.248486	810.48242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.089	1	47.773	47.273	48.273	-0.31596								0	0	0	0.8837	1	18077	18077		0.79363	0	1				35989	6949	22972	23093	34643	34643					0.06959774885569914
VGPIRRGG	8	Unmodified	_VGPIRRGG_					0	0	0		ENST00000285605.7_1_10:99474680-99474815:+|nuORF	ENST00000285605.7_1_10:99474680-99474815:+|nuORF	ENST00000285605.7_1_10:99474680-99474815:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	811.49072265625	1	811.489696	810.48242	0.77372	0.00062786	0.30354	0.00024632	1.0773	0.00087419	811.48967985842	48.614	0.92869	48.247	47.935	48.864	-0.36727					69	25	4	0	0	0	0.87576	1	18164	18164		0.79363	0	1	73144000			35990	6949	22972	23093	34644	34644					0.06959774885569914
VGPKGPPL	8	Unmodified	_VGPKGPPL_					0	0	0			REV__SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant	REV__SGIP1|p.N627Tfs*21|1|0.07|ENSG00000118473|chr1:66729399-66729399|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	382.7369689941406	2	382.736889	763.459225	0.22099	8.4581E-05	0.03968	1.5187E-05	0.26067	9.9767E-05	382.7367937211972	42.676	0.31182	42.606	42.429	42.741	-0.069984					11	5	3	0	0	0	0.77285	1	16155	16155		14.582	5.2343	1	64693000	+		35991	17514	22973	23094	34645	34645					0.06803336048233177
VGPPAEGG	8	Unmodified	_VGPPAEGG_					0	0	0			REV__KLC3|p.A93Gfs*74|1|0.3|ENSG00000104892|chr19:45346560-45346561|-/G|frameshift_variant	REV__KLC3|p.A93Gfs*74|1|0.3|ENSG00000104892|chr19:45346560-45346561|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	683.3368530273438	1	683.335881	682.328604	0.22482	0.00015363	0.56489	0.00038601	0.78971	0.00053964	683.3362445035274	19.049	1.0947	18.68	17.95	19.044	-0.3695					29	20	2	0	0	0	0.29313	1	6527	6527		59.795	0	1	6132300	+		35992	16930	22974	23095	34646	34646					-0.025266796706091554
VGPPAEGG	8	Unmodified	_VGPPAEGG_					0	0	0			REV__KLC3|p.A93Gfs*74|1|0.3|ENSG00000104892|chr19:45346560-45346561|-/G|frameshift_variant	REV__KLC3|p.A93Gfs*74|1|0.3|ENSG00000104892|chr19:45346560-45346561|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	683.3363037109375	1	683.335881	682.328604	0.92952	0.00063517	0.027984	1.9122E-05	0.9575	0.00065429	683.3357471771637	18.728	1.301	18.797	17.938	19.239	0.069159					42	24	2	0	0	0	0.29313	2	6236	6236;6468		59.795	0	1	10165000	+		35993	16930	22974	23095	34647;34648	34647					-0.025266796706091554
VGPPAEGG	8	Unmodified	_VGPPAEGG_					0	0	0			REV__KLC3|p.A93Gfs*74|1|0.3|ENSG00000104892|chr19:45346560-45346561|-/G|frameshift_variant	REV__KLC3|p.A93Gfs*74|1|0.3|ENSG00000104892|chr19:45346560-45346561|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	683.3363037109375	1	683.335881	682.328604	0.62083	0.00042423	0.34509	0.00023581	0.96592	0.00066005	683.3359696910564	18.886	1.2971	18.704	17.837	19.134	-0.18196					43	24	2	0	0	0	0.29313	2	6241	6241;6472		59.795	0	1	5580300	+		35994	16930	22974	23095	34649;34650	34649					-0.025266796706091554
VGPPQALA	8	Unmodified	_VGPPQALA_					0	0	0			REV__PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant	REV__PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	376.7178955078125	2	376.718696	751.422839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.039	1	10.857	10.357	11.357	-0.18135								0	0	0	0.8837	1	3405	3405		0.79363	0	1		+		35995	13885	22975	23096	34651	34651					0.03718459151502884
VGPPVSFELQ	10	Unmodified	_VGPPVSFELQ_					0	0	0			REV__CYP1A2|p.K488I|1|0.18|ENSG00000140505|chr15:74755000-74755000|A/T|missense_variant	REV__CYP1A2|p.K488I|1|0.18|ENSG00000140505|chr15:74755000-74755000|A/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	536.7861328125	2	536.787307	1071.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.763	1	38.461	37.961	38.961	-0.30137								0	0	0	0.92607	1	14370	14370		10.074	0.6908	1		+		35996	10319	22976	23097	34652	34652					0.027143232404114315
VGPRDIFRVV	10	Unmodified	_VGPRDIFRVV_					0	0	0		CDHR1|p.G404D|1|0.14|ENSG00000148600|chr10:84208772-84208772|G/A|missense_variant	CDHR1|p.G404D|1|0.14|ENSG00000148600|chr10:84208772-84208772|G/A|missense_variant	CDHR1|p.G404D|1|0.14|ENSG00000148600|chr10:84208772-84208772|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	579.3424072265625	2	579.343115	1156.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.878	1	37.496	36.996	37.996	-0.38283								0	0	0	0.96377	1	13872	13872		1.6526	0	1				35997	387	22977	23098	34653	34653					0.09960802388195589
VGPRFLKRALW	11	Unmodified	_VGPRFLKRALW_					0	0	0		ENST00000472042.1_1_18:3457420-3457498:+|nuORF	ENST00000472042.1_1_18:3457420-3457498:+|nuORF	ENST00000472042.1_1_18:3457420-3457498:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	671.821533203125	2	671.908956	1341.80336	0.30368	0.00020404	1.3038	0.00087604	1.6075	0.0010801	672.4100744177682	54.866	0.92044	54.678	54.457	55.377	-0.18797					26	17	2	0	0	0	0.36553	1	21183	21183		3.5965	2.1146	1	33667000			35998	8170	22978	23099	34654	34654					0.1461303247599517
VGPRIQLPQ	9	Unmodified	_VGPRIQLPQ_					0	0	0			REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000110422|Q9H422-2|HIPK3	MSMS	HCT116MG_D190212_S3	3	504.30120849609375	2	504.303458	1006.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.963	1	31.688	31.188	32.188	-0.27477								0	0	0	0.768	1	11697	11697		7.9102	0	1		+		35999	11399	22979	23100	34655	34655					0.08933155434078799
VGPRIQLPQ	9	Unmodified	_VGPRIQLPQ_					0	0	0			REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000110422|Q9H422-2|HIPK3	MSMS	HCT116MG_D190212_S3	3	504.30194091796875	2	504.303458	1006.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.936	1	35.636	35.136	36.136	-0.30042								0	0	0	0.768	1	13261	13261		7.9102	2.6795	1		+		36000	11399	22979	23100	34656	34656					0.08933155434078799
VGPRIQLPQ	9	Unmodified	_VGPRIQLPQ_					0	0	0			REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000110422|Q9H422-2|HIPK3	MSMS	HCT116MG_D190212_S4	4	504.3016052246094	2	504.303458	1006.59236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.07	1	36.685	36.185	37.185	-0.38486								0	0	0	0.76818	1	13590	13590		7.2892	0.56607	1		+		36001	11399	22979	23100	34657	34657					0.08933155434078799
VGPRKRPEDSP	11	Unmodified	_VGPRKRPEDSP_					0	0	0		ENST00000470743.4_1_1:161326608-161332330:+|nuORF;nc|ENSG00000143252|Q99643-4|SDHC;nc|ENSG00000143252|Q99643-2|SDHC	ENST00000470743.4_1_1:161326608-161332330:+|nuORF	ENST00000470743.4_1_1:161326608-161332330:+|nuORF	MSMS	HCT116MG_D190212_S2	2	619.3340454101562	2	619.336018	1236.65748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.261	1	42.193	41.693	42.693	-0.068199								0	0	0	0.94416	1	15992	15992		9.3831	1.2276	1				36002	8149	22980	23101	34658	34658					0.048621051692634865
VGPRLYLRLAA	11	Unmodified	_VGPRLYLRLAA_					0	0	0			REV__nc|ENSG00000187258|Q6W5P4-6|NPSR1	REV__nc|ENSG00000187258|Q6W5P4-6|NPSR1	MSMS	HCT116MG_D190212_S4	4	410.25726318359375	3	410.255669	1227.74518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.354	1	51.004	50.504	51.504	-0.35028								0	0	0	0.95954	1	19110	19110		0.45452	0	1		+		36003	17251	22981	23102	34659	34659					0.14041350830689225
VGPRRKLNEI	10	Unmodified	_VGPRRKLNEI_					0	0	0		ENST00000586695.1_1_18:77287338-77287574:+|nuORF	ENST00000586695.1_1_18:77287338-77287574:+|nuORF	ENST00000586695.1_1_18:77287338-77287574:+|nuORF	MSMS	HCT116MG_D190212_S2	2	591.35888671875	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.613	1	61.47	60.97	61.97	-0.14227								0	0	0	0.96453	1	23867	23867		1.4819	0.95714	1				36004	8996	22982	23103	34660	34660					0.12091589791225488
VGPRRRRP	8	Unmodified	_VGPRRRRP_					0	0	0		ENST00000481848.6_2_6:127837311-127837734:-|nuORF	ENST00000481848.6_2_6:127837311-127837734:-|nuORF	ENST00000481848.6_2_6:127837311-127837734:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	497.31195068359375	2	497.312484	992.610414	0.29126	0.00014485	-1.0289	-0.00051168	-0.73764	-0.00036684	497.31190787625553	49.053	0.51772	49.053	48.819	49.337	0					14	9	2	0	0	0	0.84759	1	18674	18674		5.7604	0.52976	1	17936000			36005	8255	22983	23104	34661	34661					0.1138133519945086
VGPRRRRP	8	Unmodified	_VGPRRRRP_					0	0	0		ENST00000481848.6_2_6:127837311-127837734:-|nuORF	ENST00000481848.6_2_6:127837311-127837734:-|nuORF	ENST00000481848.6_2_6:127837311-127837734:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	497.312484	992.610414	0.29126	0.00014485	-1.0289	-0.00051168	-0.73764	-0.00036684	497.31190787625553	49.053	0.51772	49.053	48.819	49.337	0	0	0	NaN	5.7604	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17936000			36006	8255	22983	23104							0.1138133519945086
VGPSFWALQSV	11	Unmodified	_VGPSFWALQSV_					0	0	0			REV__ENST00000547048.5_1_12:53861836-53862013:+|nuORF	REV__ENST00000547048.5_1_12:53861836-53862013:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	397.5450134277344	3	397.544996	1189.61316	-0.086576	-3.4418E-05	0.08017	3.1871E-05	-0.0064057	-2.5466E-06	397.54497387621507	38.807	0.25985	38.723	38.597	38.857	-0.084621					10	4	3	0	0	0	0.7259	1	14601	14601		6.6235	1.3266	1	28678000	+		36007	16406	22984	23105	34662	34662					0.025937010230791202
VGPSLCDER	9	Unmodified	_VGPSLCDER_					0	0	0			REV__ENST00000470843.5_1_1:93299393-93299459:+|nuORF	REV__ENST00000470843.5_1_1:93299393-93299459:+|nuORF	MSMS	HCT116MG_D190212_S3	3	488.2304382324219	2	488.231842	974.44913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.45	1	44.142	43.642	44.642	-0.30759								0	0	0	0.71969	1	16617	16617		18.135	0	1		+		36008	15866	22985	23106	34663	34663					-0.03911639739317252
VGPSRHLQ	8	Unmodified	_VGPSRHLQ_					0	0	0			REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	447.251220703125	2	447.251226	892.487899	0.037099	1.6592E-05	0.13051	5.837E-05	0.16761	7.4962E-05	447.25116097841504	26.839	0.26071	26.839	26.657	26.918	0					9	4	3	0	0	0	0.46267	1	9715	9715		44.407	2.3125	1	13540000	+		36009	17948	22986	23107	34664	34664					0.03735453677370515
VGPSRHLQ	8	Unmodified	_VGPSRHLQ_					0	0	0			REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	447.2513122558594	2	447.251226	892.487899	0.39696	0.00017754	0.14456	6.4653E-05	0.54152	0.00024219	447.2512231883728	27.286	0.31353	26.933	26.713	27.026	-0.35254					7	5	2	0	0	0	0.34844	1	9922	9922		54.774	18.647	1	9145400	+		36010	17948	22986	23107	34665	34665					0.03735453677370515
VGPSRHLQ	8	Unmodified	_VGPSRHLQ_					0	0	0			REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	REV__tr|U7T3I3|U7T3I3_FUSNUDNA-directedRNApolymerasesubunitbetaOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rpoBPE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	447.251226	892.487899	0.39696	0.00017754	0.14456	6.4653E-05	0.54152	0.00024219	447.2512231883728	27.286	0.31353	26.933	26.713	27.026	-0.35254	0.046812	7.6576E-06	NaN	54.774	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9145400	+		36011	17948	22986	23107							0.03735453677370515
VGPSRRSSLLH	11	Unmodified	_VGPSRRSSLLH_					0	0	0			REV__ENST00000474233.1_1_13:102344944-102345004:+|nuORF	REV__ENST00000474233.1_1_13:102344944-102345004:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	605.347412109375	2	604.846553	1207.67855	0.29227	0.00017678	-0.64771	-0.00039177	-0.35545	-0.00021499	604.8461779905333	50.654	1.1869	50.654	50.162	51.349	0					51	22	3	0	0	0	0.74191	1	19425	19425		1.3295	0	1	33659000	+		36012	15896	22987	23108	34666	34666					0.08302115268816124
VGPTGPVG	8	Unmodified	_VGPTGPVG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	683.3724975585938	1	683.372266	682.36499	0.979	0.00066902	-0.3568	-0.00024382	0.62221	0.0004252	683.3719826446763	27.055	0.36478	26.885	26.651	27.016	-0.16933					9	6	2	0	0	0	0.052199	1	9724	9724		120.86	8.2983	1	5137200			36013	4715	22988	23109	34667	34667					0.011101972261030824
VGPTGPVG	8	Unmodified	_VGPTGPVG_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	683.3723754882812	1	683.372266	682.36499	0.76168	0.00052051	0.031891	2.1793E-05	0.79357	0.0005423	683.3721326438232	27.174	0.41565	26.863	26.639	27.054	-0.3114					11	7	2	0	0	0	0.052199	1	9723	9723		120.86	8.2983	1	3511600			36014	4715	22988	23109	34668	34668					0.011101972261030824
VGPTGPVGA	9	Unmodified	_VGPTGPVGA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	754.41015625	1	754.40938	753.402104	0.6788	0.0005121	0.11005	8.302E-05	0.78885	0.00059512	754.4092928737175	27.563	0.31218	27.374	27.153	27.465	-0.18847					7	5	2	0	0	0	0.005725	1	9963	9963		131.3	41.871	1	2175400			36015	4715	22989	23110	34669	34669					0.015538687718617439
VGPTGPVGA	9	Unmodified	_VGPTGPVGA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S3	3	754.4092407226562	1	754.40938	753.402104	0.71042	0.00053595	-0.033562	-2.532E-05	0.67686	0.00051063	754.4091768039349	28.601	0.36443	28.396	28.177	28.541	-0.20593					11	6	2	0	0	0	0.0034497	1	10347	10347		161.89	60.172	1	6702100			36016	4715	22989	23110	34670	34670					0.015538687718617439
VGPTGPVGA	9	Unmodified	_VGPTGPVGA_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;COL1A2|p.P840Lfs*183|1|0.17|ENSG00000164692|chr7:94423068-94423068|C/-|frameshift_variant;ENST00000473573.5_1_7:94043536-94051279:+|nuORF	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	HCT116MG_D190212_S4	4	754.4098510742188	1	754.40938	753.402104	0.82301	0.00062089	-0.35344	-0.00026664	0.46958	0.00035425	754.4091289324598	28.775	0.46712	28.434	28.159	28.626	-0.34059					13	8	2	0	0	0	0.0034497	1	10331	10331		161.89	60.172	1	5504100			36017	4715	22989	23110	34671	34671					0.015538687718617439
VGPVDSVP	8	Unmodified	_VGPVDSVP_					0	0	0			REV__nc|ENSG00000139971|Q86TY3-2|ARMH4	REV__nc|ENSG00000139971|Q86TY3-2|ARMH4	MSMS	HCT116MG_D190212_S4	4	385.20703125	2	385.208161	768.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.652	1	22.415	21.915	22.915	-0.23758								0	0	0	0.8837	1	7892	7892		2.8892	0	1		+		36018	12280	22990	23111	34672	34672					0.008304490520004038
VGPVNPAA	8	Unmodified	_VGPVNPAA_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	HCT116MG_D190212_S2	2	724.3968505859375	1	724.398815	723.391539	1.2219	0.00088518	-2.9415	-0.0021308	-1.7195	-0.0012456	724.3961721200695	47.135	0.31028	47.013	46.871	47.182	-0.12175					7	5	2	0	0	0	0.86388	1	18006	18006		2.8892	0	1	8779300			36019	3191	22991	23112	34673	34673					0.01877886117415528
VGPVPVAL	8	Unmodified	_VGPVPVAL_					0	0	0			REV__MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant	REV__MYCBP2|p.C1064Ifs*31|1|0.09|ENSG00000005810|chr13:77211267-77211279|TTATCAGAAGGCA/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	375.85980224609375	2	376.239264	750.463976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.862	1	20.862	20.362	21.362	0								0	0	0	0.8837	1	7314	7314		6.3541	0	1		+		36020	10478	22992	23113	34674	34674					0.0787622019098535
VGPVSLLTDRV	11	Unmodified	_VGPVSLLTDRV_					0	0	0			REV__ENST00000482990.1_1_2:27479185-27480240:-|nuORF	REV__ENST00000482990.1_1_2:27479185-27480240:-|nuORF	MSMS	HCT116MG_D190212_S4	4	578.1273193359375	2	578.340238	1154.66592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.268	1	37.885	37.385	38.385	-0.38283								0	0	0	0.95925	1	14019	14019		1.4819	0	1		+		36021	11532	22993	23114	34675	34675					0.09477659085860068
VGPVSRAWHAL	11	Unmodified	_VGPVSRAWHAL_					0	0	0		ENST00000419895.3_1_11:112160980-112161142:+|nuORF	ENST00000419895.3_1_11:112160980-112161142:+|nuORF	ENST00000419895.3_1_11:112160980-112161142:+|nuORF	MSMS	HCT116MG_D190212_S1	1	596.9979248046875	2	596.832914	1191.65128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.477	1	50.477	49.977	50.977	0								0	0	0	0.94538	1	19261	19261		8.7454	3.4485	1				36022	7775	22994	23115	34676	34676					0.06311631728408429
VGQAHPISGSK	11	Unmodified	_VGQAHPISGSK_					0	0	0		ENST00000271324.5_1_1:111441941-111442178:+|nuORF	ENST00000271324.5_1_1:111441941-111442178:+|nuORF	ENST00000271324.5_1_1:111441941-111442178:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	540.7933959960938	2	540.793455	1079.57236	0.56298	0.00030446	0.22206	0.00012009	0.78504	0.00042455	540.7933230077156	26.582	0.6247	26.432	26.098	26.723	-0.14924					31	11	3	0	0	0	0.7093	1	9475	9475		18.373	0.22675	1	17073000			36023	6922	22995	23116	34677	34677					0.035753597034727136
VGQEAAFGGDR	11	Unmodified	_VGQEAAFGGDR_					0	0	0			REV__ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant	REV__ERBB4|p.N1177Mfs*27|1|0.33|ENSG00000178568|chr2:211384012-211384012|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	553.7958984375	2	553.764894	1105.51524	0.3909	0.00021647	-0.00091938	-5.0912E-07	0.38998	0.00021596	553.764673792495	18.884	0.72905	18.953	18.354	19.083	0.069159					21	13	2	0	0	0	0.35266	1	6225	6225		16.566	6.4153	1	5573500	+		36024	13607	22996	23117	34678	34678					-0.03330107572924135
VGQEPWDTF	9	Unmodified	_VGQEPWDTF_					0	0	0			REV__ENSG00000105426|ENST00000262963|PTPRS	REV__ENSG00000105426|ENST00000262963|PTPRS	MSMS	HCT116MG_D190212_S4	4	539.7437133789062	2	539.745639	1077.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.482	1	21.264	20.764	21.764	-0.21832								0	0	0	0.46109	1	7418	7418		30.637	1.555	1		+		36025	11253	22997	23118	34679	34679					-0.05891413207450569
VGQEQKHEPAQ	11	Unmodified	_VGQEQKHEPAQ_					0	0	0			REV__ENSG00000111644|ENST00000229243|ACRBP	REV__ENSG00000111644|ENST00000229243|ACRBP	MULTI-MSMS	HCT116MG_D190212_S3	3	626.3114013671875	2	625.809833	1249.60511	0.34102	0.00021341	-0.01724	-1.0789E-05	0.32378	0.00020262	625.809532619504	20.273	0.72913	20.321	19.843	20.572	0.048109					27	13	3	0	0	0	0.67528	1	6960	6960		27.088	7.7264	1	5217600	+		36026	11432	22998	23119	34680	34680					-0.009704779643243455
VGQEQKHEPAQ	11	Unmodified	_VGQEQKHEPAQ_					0	0	0			REV__ENSG00000111644|ENST00000229243|ACRBP	REV__ENSG00000111644|ENST00000229243|ACRBP	MULTI-MSMS	HCT116MG_D190212_S4	4	625.8102416992188	2	625.809833	1249.60511	0.35625	0.00022294	-0.0026156	-1.6369E-06	0.35363	0.00022131	625.8097510649428	20.585	0.62373	20.383	19.936	20.56	-0.20133					25	11	3	0	0	0	0.56597	1	6998	6998		39.213	13.192	1	4663400	+		36027	11432	22998	23119	34681	34681					-0.009704779643243455
VGQEQKHEPAQ	11	Unmodified	_VGQEQKHEPAQ_					0	0	0			REV__ENSG00000111644|ENST00000229243|ACRBP	REV__ENSG00000111644|ENST00000229243|ACRBP	MULTI-MATCH	HCT116MG_D190212_S2	2		2	625.809833	1249.60511	0.5263	0.00032936	0.3482	0.00021791	0.8745	0.00054727	625.8098490075306	20.818	0.5254	20.437	20.075	20.601	-0.38067	0.056562	0.00030313	NaN	39.213	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4977700	+		36028	11432	22998	23119							-0.009704779643243455
VGQEQKHEPAQ	11	Unmodified	_VGQEQKHEPAQ_					0	0	0			REV__ENSG00000111644|ENST00000229243|ACRBP	REV__ENSG00000111644|ENST00000229243|ACRBP	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	625.809833	1249.60511	0.34102	0.00021341	-0.01724	-1.0789E-05	0.32378	0.00020262	625.809532619504	20.273	0.72913	20.321	19.843	20.572	0.048109	-0.059493	-0.00015427	NaN	39.213	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5217600	+		36029	11432	22998	23119							-0.009704779643243455
VGQEQKHEPAQ	11	Unmodified	_VGQEQKHEPAQ_					0	0	0			REV__ENSG00000111644|ENST00000229243|ACRBP	REV__ENSG00000111644|ENST00000229243|ACRBP	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	625.809833	1249.60511	0.35625	0.00022294	-0.0026156	-1.6369E-06	0.35363	0.00022131	625.8097510649428	20.585	0.62373	20.383	19.936	20.56	-0.20133	0.002931	-0.00013596	NaN	39.213	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4663400	+		36030	11432	22998	23119							-0.009704779643243455
VGQFGKGI	8	Unmodified	_VGQFGKGI_					0	0	0			REV__ENST00000510043.1_1_3:131188591-131190131:-|nuORF	REV__ENST00000510043.1_1_3:131188591-131190131:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.232666015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.784	1	9.784	9.284	10.284	0								0	0	0	0.8837	1	2973	2973		2.8892	0	1		+		36031	11515	22999	23120	34682	34682					0.03934148042844754
VGQGKVEP	8	Unmodified	_VGQGKVEP_					0	0	0			REV__ENST00000268097.9_1_15:72668400-72668610:-|nuORF	REV__ENST00000268097.9_1_15:72668400-72668610:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	407.22705078125	2	407.226885	812.439217	0.15535	6.3264E-05	0.074736	3.0435E-05	0.23009	9.3699E-05	407.2269532821593	27.471	0.41625	27.302	27.068	27.484	-0.16933					9	7	2	0	0	0	0.69862	1	9914	9914		23.148	1.4018	1	5426900	+		36032	14685	23000	23121	34683	34683					0.025495403176137188
VGQGKVEP	8	Unmodified	_VGQGKVEP_					0	0	0			REV__ENST00000268097.9_1_15:72668400-72668610:-|nuORF	REV__ENST00000268097.9_1_15:72668400-72668610:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	407.226885	812.439217	0.15535	6.3264E-05	0.074736	3.0435E-05	0.23009	9.3699E-05	407.2269532821593	27.471	0.41625	27.302	27.068	27.484	-0.16933	-0.034983	5.675E-05	NaN	23.148	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5426900	+		36033	14685	23000	23121							0.025495403176137188
VGQGKVEP	8	Unmodified	_VGQGKVEP_					0	0	0			REV__ENST00000268097.9_1_15:72668400-72668610:-|nuORF	REV__ENST00000268097.9_1_15:72668400-72668610:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	407.226885	812.439217	0.16376	6.6687E-05	-0.048676	-1.9822E-05	0.11508	4.6865E-05	407.2268137936519	27.694	0.25009	27.372	27.252	27.502	-0.32157	0.034983	-4.3763E-05	NaN	23.148	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4717000	+		36034	14685	23000	23121							0.025495403176137188
VGQGRFGQIGS	11	Unmodified	_VGQGRFGQIGS_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MULTI-MSMS	HCT116MG_D190212_S1	1	553.78173828125	2	553.291079	1104.56761	0.61927	0.00034263	-0.004015	-2.2215E-06	0.61525	0.00034041	553.2909615986745	20.619	0.8866	20.619	19.966	20.852	0					28	16	2	0	0	0	0.22179	2	7165	7100;7165		72.968	34.994	1	15000000	+		36035	17183	23001	23122	34684;34685	34685					0.019504755606931212
VGQGRFGQIGS	11	Unmodified	_VGQGRFGQIGS_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MULTI-SECPEP	HCT116MG_D190212_S1	1	553.2212524414062	2	553.291079	1104.56761	0.61927	0.00034263	-0.004015	-2.2215E-06	0.61525	0.00034041	553.2909615986745	20.619	0.8866	20.619	19.966	20.852	0					28	16	2	0	0	0	0.15574	1	7212	7212		72.968	34.994	1	15000000	+		36036	17183	23001	23122	34686	34686					0.019504755606931212
VGQGRFGQIGS	11	Unmodified	_VGQGRFGQIGS_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MULTI-MSMS	HCT116MG_D190212_S2	2	553.2808227539062	2	553.291079	1104.56761	0.32499	0.00017981	0.29986	0.00016591	0.62484	0.00034572	553.2911615960402	21.111	0.94005	20.728	20.073	21.013	-0.38288					50	17	5	0	0	0	0.22179	3	7214	7214;7253;7479		72.968	34.994	1	129410000	+		36037	17183	23001	23122	34687;34688;34689	34687					0.019504755606931212
VGQGRFGQIGS	11	Unmodified	_VGQGRFGQIGS_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MULTI-SECPEP	HCT116MG_D190212_S2	2	553.7824096679688	2	553.291079	1104.56761	0.32499	0.00017981	0.29986	0.00016591	0.62484	0.00034572	553.2911615960402	21.111	0.94005	20.728	20.073	21.013	-0.38288					50	17	5	0	0	0	0.15574	1	7290	7290		72.968	26.947	1	129410000	+		36038	17183	23001	23122	34690	34690					0.019504755606931212
VGQGRFGQIGS	11	Unmodified	_VGQGRFGQIGS_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2920532226562	2	553.291079	1104.56761	0.37447	0.00020719	-0.15072	-8.339E-05	0.22376	0.0001238	553.2910575991816	19.099	0.52015	19.168	18.875	19.395	0.069159					21	9	3	0	0	0	0.34323	1	6533	6533		60.074	16.216	1	5013400	+		36039	17183	23001	23122	34691	34691					0.019504755606931212
VGQGRFGQIGS	11	Unmodified	_VGQGRFGQIGS_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MULTI-MSMS	HCT116MG_D190212_S3	3	553.291259765625	2	553.291079	1104.56761	0.29429	0.00016283	0.2513	0.00013904	0.54559	0.00030187	553.2911333262828	20.55	1.4578	20.584	19.621	21.079	0.034473					82	27	5	0	0	0	0.22179	2	7072	6846;7072		72.968	25.219	1	144170000	+		36040	17183	23001	23122	34692;34693	34693					0.019504755606931212
VGQGRFGQIGS	11	Unmodified	_VGQGRFGQIGS_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2913208007812	2	553.291079	1104.56761	0.42966	0.00023773	0.068593	3.7952E-05	0.49825	0.00027568	553.290963500246	19.401	0.57192	19.215	18.869	19.441	-0.18674					19	10	3	0	0	0	0.34323	1	6558	6558		60.074	23.947	1	4514500	+		36041	17183	23001	23122	34694	34694					0.019504755606931212
VGQGRFGQIGS	11	Unmodified	_VGQGRFGQIGS_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MULTI-MSMS	HCT116MG_D190212_S4	4	553.2913208007812	2	553.291079	1104.56761	0.47587	0.00026329	0.048459	2.6812E-05	0.52433	0.00029011	553.2910400715302	20.788	1.6578	20.578	19.517	21.175	-0.20959					89	31	5	0	0	0	0.22179	3	7054	7054;7203;7310		72.968	31.128	1	129920000	+		36042	17183	23001	23122	34695;34696;34697	34695					0.019504755606931212
VGQGRFGQIGS	11	Unmodified	_VGQGRFGQIGS_					0	0	0			REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	REV__nc|ENSG00000161249|Q6E0U4-6|DMKN	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	553.291079	1104.56761	0.37447	0.00020719	-0.15072	-8.339E-05	0.22376	0.0001238	553.2910575991816	19.099	0.52015	19.168	18.875	19.395	0.069159	-0.023479	-0.00014356	NaN	60.074	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5013400	+		36043	17183	23001	23122							0.019504755606931212
VGQGTANIRPS	11	Unmodified	_VGQGTANIRPS_					0	0	0			REV__SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant	REV__SPAM1|p.K450Rfs*3|1|0.35|ENSG00000106304|chr7:123959786-123959787|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	550.2183837890625	2	550.296362	1098.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.619	1	19.425	18.925	19.925	-0.19367								0	0	0	0.94416	1	6665	6665		9.3831	0.78985	1		+		36044	11292	23002	23123	34698	34698					0.032824582151079085
VGQILVSL	8	Unmodified	_VGQILVSL_					0	0	0			REV__tr|U7STU6|U7STU6_FUSNUMalonatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01193PE=3SV=1	REV__tr|U7STU6|U7STU6_FUSNUMalonatetransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01193PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	414.76153564453125	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.302	1	49.148	48.648	49.648	-0.15405								0	0	0	0.8837	1	18865	18865		2.5775	0	1		+		36045	17811	23003	23124	34699	34699					0.09099874391188223
VGQINKRSVK	10	Unmodified	_VGQINKRSVK_					0	0	0			REV__nc|ENSG00000090889|O95239-2|KIF4A	REV__nc|ENSG00000090889|O95239-2|KIF4A	MSMS	HCT116MG_D190212_S1	1	376.8987121582031	3	376.899773	1127.67749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9511	1	9.9511	9.4511	10.451	0								0	0	0	0.96804	1	3034	3034		0.69767	0	1		+		36046	17091	23004	23125	34700	34700					0.11875900899894987
VGQIRQAHLLL	11	Unmodified	_VGQIRQAHLLL_					0	0	0		ENST00000576351.5_2_17:3486716-3491620:-|nuORF	ENST00000576351.5_2_17:3486716-3491620:-|nuORF	ENST00000576351.5_2_17:3486716-3491620:-|nuORF	MSMS	HCT116MG_D190212_S4	4	624.3810424804688	2	624.382771	1246.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.073	1	35.688	35.188	36.188	-0.38558								0	0	0	0.95581	1	13187	13187		3.2813	1.4371	1				36047	8925	23005	23126	34701	34701					0.13748449342347158
VGQIRQAHLLL	11	Unmodified	_VGQIRQAHLLL_					0	0	0		ENST00000576351.5_2_17:3486716-3491620:-|nuORF	ENST00000576351.5_2_17:3486716-3491620:-|nuORF	ENST00000576351.5_2_17:3486716-3491620:-|nuORF	MSMS	HCT116MG_D190212_S4	4	624.380126953125	2	624.382771	1246.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.106	1	35.72	35.22	36.22	-0.38558								0	0	0	0.95581	1	13200	13200		3.2813	1.6287	1				36048	8925	23005	23126	34702	34702					0.13748449342347158
VGQKIILHGA	10	Unmodified	_VGQKIILHGA_					0	0	0		BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant;ENSG00000139618|ENST00000380152|BRCA2	BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant	BRCA2|p.E3316Rfs*11|1|0.3|ENSG00000139618|chr13:32398452-32398453|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	518.3163452148438	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.598	1	51.247	50.747	51.747	-0.35028								0	0	0	0.96291	1	19208	19208		1.8442	0	1				36049	275	23006	23127	34703	34703					0.10773728468188892
VGQLEPAPG	9	Unmodified	_VGQLEPAPG_					0	0	0			REV__ENST00000534765.1_1_11:65835264-65836005:+|nuORF	REV__ENST00000534765.1_1_11:65835264-65836005:+|nuORF	MSMS	HCT116MG_D190212_S3	3	434.2328796386719	2	434.232168	866.449782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.261	1	16.346	15.846	16.846	0.085424								0	0	0	0.69272	1	5383	5383		19.439	4.6007	1		+		36050	10950	23007	23128	34704	34704					0.011215229720392017
VGQLKSSL	8	Unmodified	_VGQLKSSL_					0	0	0		nc|ENSG00000036672|O75604-2|USP2;nc|ENSG00000036672|O75604-3|USP2;nc|ENSG00000036672|O75604-4|USP2;ENSG00000036672|ENST00000260187|USP2	nc|ENSG00000036672|O75604-2|USP2	nc|ENSG00000036672|O75604-2|USP2	MSMS	HCT116MG_D190212_S2	2	416.2491149902344	2	416.25036	830.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.645	1	34.486	33.986	34.986	-0.15834								0	0	0	0.8837	1	12896	12896		5.7604	0	1				36051	988	23008	23129	34705	34705					0.06414399868754117
VGQMENISPGQ	11	Unmodified	_VGQMENISPGQ_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MSMS	HCT116MG_D190212_S3	3	580.272705078125	2	580.274238	1158.53392	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.608	1	30.359	29.859	30.859	-0.24946								0	0	0	0.58002	1	11151	11151		43.982	8.3696	1				36052	6153	23009	23130	34706	34706					-0.039003139933811326
VGQNGFSP	8	Unmodified	_VGQNGFSP_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MSMS	HCT116MG_D190212_S1	1	403.1977233886719	2	403.195585	804.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.478	1	37.478	36.978	37.978	0								0	0	0	0.8837	1	14003	14003		5.7604	2.8712	1				36053	8891	23010	23131	34707	34707					-0.033396057505797216
VGQPKHLEQQ	10	Unmodified	_VGQPKHLEQQ_					0	0	0		ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	MSMS	HCT116MG_D190212_S4	4	582.3123168945312	2	582.312012	1162.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.391	1	30.034	29.534	30.534	-0.3571								0	0	0	0.86501	1	11015	11015		20.415	2.9719	1				36054	4587	23011	23132	34708	34708					0.034670312492153244
VGQPKPGL	8	Unmodified	_VGQPKPGL_					0	0	0			REV__ENSG00000164073|ENST00000641686|MFSD8	REV__ENSG00000164073|ENST00000641686|MFSD8	MSMS	HCT116MG_D190212_S3	3	398.2384948730469	2	398.239796	794.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.638	1	29.401	28.901	29.901	-0.23655								0	0	0	0.8837	1	10775	10775		10.183	0.83596	1		+		36055	12973	23012	23133	34709	34709					0.05958434559909165
VGQQDADA	8	Unmodified	_VGQQDADA_					0	0	0			REV__ENSG00000156875|ENST00000370152|MFSD14A	REV__ENSG00000156875|ENST00000370152|MFSD14A	MSMS	HCT116MG_D190212_S3	3	402.1796875	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.179	1	11.226	10.726	11.726	0.04739								0	0	0	0.8837	1	3419	3419		0.79363	0	1		+		36056	12733	23013	23134	34710	34710					-0.06336803855481321
VGQQDADA	8	Unmodified	_VGQQDADA_					0	0	0			REV__ENSG00000156875|ENST00000370152|MFSD14A	REV__ENSG00000156875|ENST00000370152|MFSD14A	MSMS	HCT116MG_D190212_S3	3	402.17974853515625	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.978	1	13.047	12.547	13.547	0.069158								0	0	0	0.8837	1	4087	4087		0.79363	0	1		+		36057	12733	23013	23134	34711	34711					-0.06336803855481321
VGQQDADA	8	Unmodified	_VGQQDADA_					0	0	0			REV__ENSG00000156875|ENST00000370152|MFSD14A	REV__ENSG00000156875|ENST00000370152|MFSD14A	MSMS	HCT116MG_D190212_S3	3	402.17962646484375	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.643	1	13.718	13.218	14.218	0.074899								0	0	0	0.8837	1	4340	4340		0.79363	0	1		+		36058	12733	23013	23134	34712	34712					-0.06336803855481321
VGQQDADA	8	Unmodified	_VGQQDADA_					0	0	0			REV__ENSG00000156875|ENST00000370152|MFSD14A	REV__ENSG00000156875|ENST00000370152|MFSD14A	MSMS	HCT116MG_D190212_S4	4	402.1795654296875	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.368	1	11.187	10.687	11.687	-0.18135								0	0	0	0.8837	1	3509	3509		0.79363	0	1		+		36059	12733	23013	23134	34713	34713					-0.06336803855481321
VGQQDADA	8	Unmodified	_VGQQDADA_					0	0	0			REV__ENSG00000156875|ENST00000370152|MFSD14A	REV__ENSG00000156875|ENST00000370152|MFSD14A	MSMS	HCT116MG_D190212_S4	4	402.1797180175781	2	402.180132	802.345711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.978	1	11.803	11.303	12.303	-0.17441								0	0	0	0.8837	1	3704	3704		0.79363	0	1		+		36060	12733	23013	23134	34714	34714					-0.06336803855481321
VGQRRRVSIN	10	Unmodified	_VGQRRRVSIN_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MSMS	HCT116MG_D190212_S3	3	592.8530883789062	2	592.85217	1183.68979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.643	1	14.723	14.223	15.223	0.079683								0	0	0	0.95507	1	4730	4730		3.5965	0	1		+		36061	12961	23014	23135	34715	34715					0.10528937362960278
VGQTGPPP	8	Unmodified	_VGQTGPPP_					0	0	0			REV__nc|ENSG00000149541|O94766-2|B3GAT3	REV__nc|ENSG00000149541|O94766-2|B3GAT3	MULTI-MSMS	HCT116MG_D190212_S2	2	752.3836669921875	1	752.39373	751.386454	1.2044	0.0009062	0.13056	9.8233E-05	1.335	0.0010044	752.3937917264053	33.664	0.25988	33.471	33.327	33.587	-0.19297					6	4	2	0	0	0	0.69862	1	12470	12470		23.148	6.2061	1	45381000	+		36062	12567	23015	23136	34716	34716					0.0008158225480201509
VGQTQRPRLAL	11	Unmodified	_VGQTQRPRLAL_					0	0	0			REV__ENST00000524821.5_2_8:145751978-145752119:-|nuORF	REV__ENST00000524821.5_2_8:145751978-145752119:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	414.2332458496094	3	413.582444	1237.7255	-0.21663	-8.9593E-05	-0.75976	-0.00031422	-0.97639	-0.00040382	413.5820567768884	51.014	1.4442	51.014	49.905	51.349	0					48	27	2	0	0	0	0.36607	1	19359	19359		0	0	1	18211000	+		36063	16262	23016	23137	34717	34717					0.11614974819940471
VGQYKRDRRFI	11	Unmodified	_VGQYKRDRRFI_					0	0	0			REV__ENST00000533157.5_1_4:190863025-190863094:+|nuORF	REV__ENST00000533157.5_1_4:190863025-190863094:+|nuORF	MSMS	HCT116MG_D190212_S4	4	719.4058837890625	2	719.407309	1436.80007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.498	1	48.131	47.631	48.631	-0.36728								0	0	0	0.9598	1	17964	17964		1.1933	0	1		+		36064	16325	23017	23138	34718	34718					0.09913737631291042
VGRATQRR	8	Unmodified	_VGRATQRR_					0	0	0			REV__nc|ENSG00000140274|Q1HG44-2|DUOXA2	REV__nc|ENSG00000140274|Q1HG44-2|DUOXA2	MSMS	HCT116MG_D190212_S3	3	472.2802429199219	2	472.280849	942.547145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.615	1	12.677	12.177	13.177	0.06246								0	0	0	0.8837	1	3948	3948		0.79363	0	1		+		36065	17148	23018	23139	34719	34719					0.07357349691551462
VGRCPVSL	8	Unmodified	_VGRCPVSL_					0	0	0		ENST00000372676.7_1_20:44108692-44110028:+|nuORF	ENST00000372676.7_1_20:44108692-44110028:+|nuORF	ENST00000372676.7_1_20:44108692-44110028:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	415.7312316894531	2	415.73128	829.448008	0.0037585	1.5625E-06	0.47349	0.00019684	0.47725	0.00019841	415.73136903203607	50.653	0.20732	50.482	50.403	50.611	-0.1719					5	3	2	0	0	0	0.81821	1	19455	19455		9.3474	0	1	8272000			36066	7463	23019	23140	34720	34720					0.0264619068243519
VGRCSGGH	8	Unmodified	_VGRCSGGH_					0	0	0			REV__ENST00000370996.4_1_20:58514954-58515329:-|nuORF	REV__ENST00000370996.4_1_20:58514954-58515329:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	773.0187377929688	1	772.351882	771.344606	0.84678	0.00065401	-1.0399	-0.00080318	-0.19313	-0.00014917	772.3509709313535	48.947	0.31429	48.631	48.449	48.763	-0.31596					8	5	2	0	0	0	0.33364	1	18458	18458		0.79363	0	1	6145300	+		36067	15159	23020	23141	34721	34721					-0.050212967053539614
VGRDVCRLRK	10	Unmodified	_VGRDVCRLRK_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	HCT116MG_D190212_S2	2	401.5710754394531	3	401.236391	1200.68734	0.25894	0.0001039	4.1736	0.0016746	4.4325	0.0017785	401.23926252579673	43.635	0.51546	43.559	43.3	43.816	-0.07592					20	9	4	0	0	0	0.67142	1	16585	16585		22.775	6.2091	1	57832000			36068	2519	23021	23142	34722	34722					0.09502765633601484
VGRGDGPGC	9	Unmodified	_VGRGDGPGC_					0	0	0			REV__ENST00000292852.8_1_19:39437129-39440720:-|nuORF	REV__ENST00000292852.8_1_19:39437129-39440720:-|nuORF	MSMS	HCT116MG_D190212_S3	3	409.1830749511719	2	409.184694	816.354836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.189	1	55.904	55.404	56.404	-0.28438								0	0	0	0.7696	1	21326	21326		2.3027	1.5091	1		+		36069	14752	23022	23143	34723	34723					-0.060687337707804545
VGRGHGGG	8	Unmodified	_VGRGHGGG_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	696.3544921875	1	696.353597	695.34632	0.88655	0.00061735	1.637	0.0011399	2.5235	0.0017573	696.3546044919175	56.375	0.42081	56.069	55.884	56.305	-0.30626					10	7	2	0	0	0	0.87576	1	21135	21135		0.79363	0	1	3073400	+		36070	14750	23023	23144	34724	34724					-0.013539196250803798
VGRGKALW	8	Unmodified	_VGRGKALW_					0	0	0		ENST00000453698.5_1_20:37079211-37079343:+|nuORF	ENST00000453698.5_1_20:37079211-37079343:+|nuORF	ENST00000453698.5_1_20:37079211-37079343:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	886.5260009765625	1	886.525747	885.518471	0.87679	0.0007773	-0.17769	-0.00015753	0.6991	0.00061977	886.5254087382357	60.004	1.8526	59.85	59.291	61.143	-0.15441					59	36	2	0	0	0	0.87576	1	23116	23116		0.79363	0	1	16763000			36071	8005	23024	23145	34725	34725					0.07113232062397401
VGRGKALW	8	Unmodified	_VGRGKALW_					0	0	0		ENST00000453698.5_1_20:37079211-37079343:+|nuORF	ENST00000453698.5_1_20:37079211-37079343:+|nuORF	ENST00000453698.5_1_20:37079211-37079343:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	886.5259399414062	1	886.525747	885.518471	1.0368	0.00091913	-0.47289	-0.00041923	0.56389	0.0004999	886.525082365645	60.439	3.2085	60.187	58.164	61.373	-0.25233					100	61	2	0	0	0	0.87576	1	23365	23365		0.79363	0	1	11717000			36072	8005	23024	23145	34726	34726					0.07113232062397401
VGRGKKRG	8	Unmodified	_VGRGKKRG_					0	0	0			REV__RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant	REV__RGPD3|p.V1441*|1|0.45|ENSG00000153165|chr2:106423647-106423647|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	429.0885925292969	2	429.275035	856.535518	0.104	4.4646E-05	-0.65368	-0.00028061	-0.54967	-0.00023596	429.27481010337993	50.16	0.5196	49.801	49.637	50.157	-0.35878					13	9	2	0	0	0	0.33574	1	18743	18743		0	0	1	2386100	+		36073	10542	23025	23146	34727	34727					0.1015115266822022
VGRGRGPL	8	Unmodified	_VGRGRGPL_					0	0	0			REV__ENST00000446262.1_2_19:37019350-37025846:+|nuORF	REV__ENST00000446262.1_2_19:37019350-37025846:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	811.4898681640625	1	811.489696	810.48242	1.2524	0.0010163	-0.22996	-0.00018661	1.0225	0.00082972	811.4892511458081	48.667	0.93888	48.351	48.036	48.975	-0.31596					40	17	3	0	0	0	0.86388	1	18497	18497		2.8892	0	1	41845000	+		36074	15674	23026	23147	34728	34728					0.06959774885547176
VGRIPYDII	9	Unmodified	_VGRIPYDII_					0	0	0		ENST00000372572.5_2_1:42730832-42744035:-|nuORF	ENST00000372572.5_2_1:42730832-42744035:-|nuORF	ENST00000372572.5_2_1:42730832-42744035:-|nuORF	MSMS	HCT116MG_D190212_S4	4	523.30322265625	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.543	1	46.172	45.672	46.672	-0.37134								0	0	0	0.768	1	17186	17186		7.9102	2.1497	1				36075	7459	23027	23148	34729	34729					0.07626619856978323
VGRKHGIKR	9	Unmodified	_VGRKHGIKR_					0	0	0		nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	nc|ENSG00000127922|Q6ZVN7|SEM1	MSMS	HCT116MG_D190212_S1	1	350.892333984375	3	350.892953	1049.65703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.718	1	10.718	10.218	11.218	0								0	0	0	0.77018	1	3309	3309		0.26902	0	1				36076	9451	23028	23149	34730	34730					0.13418775030731922
VGRKNKSK	8	Unmodified	_VGRKNKSK_					0	0	0			REV__ENST00000526955.1_1_11:125281302-125301285:+|nuORF	REV__ENST00000526955.1_1_11:125281302-125301285:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	916.5709228515625	1	916.568675	915.561398	0.59179	0.00054241	0.42414	0.00038876	1.0159	0.00093117	916.5688588392169	50.131	0.88135	49.967	49.789	50.67	-0.16369					42	16	3	0	0	0	0.87576	1	19189	19189		0.79363	0	1	439860000	+		36077	13056	23029	23150	34731	34731					0.10024002119848774
VGRKNKSK	8	Unmodified	_VGRKNKSK_					0	0	0			REV__ENST00000526955.1_1_11:125281302-125301285:+|nuORF	REV__ENST00000526955.1_1_11:125281302-125301285:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	916.568675	915.561398	0.59179	0.00054241	0.42414	0.00038876	1.0159	0.00093117	916.5688588392169	50.131	0.88135	49.967	49.789	50.67	-0.16369	0	0	NaN	0.79363	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439860000	+		36078	13056	23029	23150							0.10024002119848774
VGRKRRRKRTR	11	Unmodified	_VGRKRRRKRTR_					0	0	0		TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant	TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant	TRANK1|p.V1077Wfs*30|1|0.29|ENSG00000168016|chr3:36856362-36856362|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	734.9777221679688	2	734.979633	1467.94471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.237	1	41.933	41.433	42.433	-0.30352								0	0	0	0.96141	1	15728	15728		0.35063	0	1				36079	18660	23030	23151	34732	34732					0.22945843621801032
VGRLGGPV	8	Unmodified	_VGRLGGPV_					0	0	0		ENST00000319080.7_12:122630330-122630822:+|nuORF	ENST00000319080.7_12:122630330-122630822:+|nuORF	ENST00000319080.7_12:122630330-122630822:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	377.73211669921875	2	377.732138	753.449723	0.084134	3.178E-05	-0.004523	-1.7085E-06	0.079611	3.0072E-05	377.73202725315355	17.371	0.31308	17.371	17.15	17.463	0					9	5	2	0	0	0	0.5791	1	5895	5895		34.187	0	1	11716000			36080	7094	23031	23152	34733	34733					0.06313567762708772
VGRLGHIL	8	Unmodified	_VGRLGHIL_					0	0	0		nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	MULTI-MSMS	HCT116MG_D190212_S3	3	864.5419921875	1	864.541397	863.534121	1.0119	0.00087485	-0.19979	-0.00017272	0.81214	0.00070213	864.5412883419187	60.552	3.4166	60.299	58.112	61.529	-0.25233					94	65	2	0	0	0	0.87576	1	23528	23528		0.79363	0	1	11658000			36081	2768	23032	23153	34734	34734					0.09689518579455125
VGRLRLTV	8	Unmodified	_VGRLRLTV_					0	0	0			REV__ENST00000514698.5_1_4:980866-997838:+|nuORF	REV__ENST00000514698.5_1_4:980866-997838:+|nuORF	MSMS	HCT116MG_D190212_S1	1	457.2994384765625	2	457.300719	912.586885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.027	1	46.027	45.527	46.527	0								0	0	0	0.8837	1	17452	17452		0.79363	0	1		+		36082	11856	23033	23154	34735	34735					0.12709476642248774
VGRPSAGHKPP	11	Unmodified	_VGRPSAGHKPP_					0	0	0		ENST00000514292.5_3_4:20702103-20702205:+|nuORF	ENST00000514292.5_3_4:20702103-20702205:+|nuORF	ENST00000514292.5_3_4:20702103-20702205:+|nuORF	MSMS	HCT116MG_D190212_S4	4	551.8101196289062	2	551.809439	1101.60433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.168	1	47.801	47.301	48.301	-0.36743								0	0	0	0.95636	1	17831	17831		2.9952	0.69251	1				36083	8519	23034	23155	34736	34736					0.05758772177273386
VGRPSRGMSI	10	Unmodified	_VGRPSRGMSI_					0	0	0			REV__ENST00000534127.5_1_11:8752243-8752675:-|nuORF	REV__ENST00000534127.5_1_11:8752243-8752675:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2897338867188	2	530.290025	1058.5655	0.45603	0.00024183	-0.4461	-0.00023656	0.0099326	5.2672E-06	530.289765833519	20.751	0.26188	20.371	20.236	20.498	-0.37949					8	4	3	0	0	0	0.71224	1	7301	7301		19.362	0.10495	1	8392200	+		36084	16331	23035	23156	34737	34737					0.03855723551259871
VGRQEQVSLI	10	Unmodified	_VGRQEQVSLI_					0	0	0		UNC5CL|p.R138Q|1|0.92|ENSG00000124602|chr6:41034154-41034154|C/T|missense_variant	UNC5CL|p.R138Q|1|0.92|ENSG00000124602|chr6:41034154-41034154|C/T|missense_variant	UNC5CL|p.R138Q|1|0.92|ENSG00000124602|chr6:41034154-41034154|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	564.824462890625	2	564.822212	1127.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.659	1	10.47	9.9696	10.97	-0.18973								0	0	0	0.96453	1	3269	3269		1.4819	0.28856	1				36085	18680	23036	23157	34738	34738					0.07116201909047959
VGRREELP	8	Unmodified	_VGRREELP_					0	0	0		ENST00000475710.1_1_7:150497987-150498938:+|nuORF	ENST00000475710.1_1_7:150497987-150498938:+|nuORF	ENST00000475710.1_1_7:150497987-150498938:+|nuORF	MSMS	HCT116MG_D190212_S3	3	478.2700500488281	2	478.269616	954.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.013	1	27.824	27.324	28.324	-0.18847								0	0	0	0.77419	1	10120	10120		24.674	0	1				36086	8202	23037	23158	34739	34739					0.045597055032772005
VGRRFLVNR	9	Unmodified	_VGRRFLVNR_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MSMS	HCT116MG_D190212_S1	1	372.8956298828125	3	372.896475	1115.66759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.01	1	10.01	9.5097	10.51	0								0	0	0	0.77018	1	3052	3052		0.26902	0	1				36087	5136	23038	23159	34740	34740					0.11438757685164092
VGRRRSWRGPL	11	Unmodified	_VGRRRSWRGPL_					0	0	0			REV__ENST00000565698.5_2_16:28109302-28109830:-|nuORF	REV__ENST00000565698.5_2_16:28109302-28109830:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	670.39404296875	2	670.394536	1338.77452	0.72093	0.00048331	-1.051	-0.00070461	-0.3301	-0.0002213	670.3932940803301	52.05	0.78048	52.05	51.807	52.587	0					25	14	3	0	0	0	0.74191	1	20055	20055		3.5965	0.31518	1	14514000	+		36088	16534	23039	23160	34741	34741					0.11868307899544561
VGRRSLVKPLP	11	Unmodified	_VGRRSLVKPLP_					0	0	0			REV__ENST00000485723.1_1_7:75283957-75368238:-|nuORF	REV__ENST00000485723.1_1_7:75283957-75368238:-|nuORF	MSMS	HCT116MG_D190212_S1	1	407.93267822265625	3	407.931185	1220.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1617	1	9.1617	8.6617	9.6617	0								0	0	0	0.9619	1	2774	2774		0.094841	0	1		+		36089	11866	23040	23161	34742	34742					0.17017039722031768
VGRRSLVKPLP	11	Unmodified	_VGRRSLVKPLP_					0	0	0			REV__ENST00000485723.1_1_7:75283957-75368238:-|nuORF	REV__ENST00000485723.1_1_7:75283957-75368238:-|nuORF	MSMS	HCT116MG_D190212_S2	2	407.9327697753906	3	407.931185	1220.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8945	1	8.6505	8.1505	9.1505	-0.24401								0	0	0	0.9619	1	2779	2779		0.094841	0	1		+		36090	11866	23040	23161	34743	34743					0.17017039722031768
VGRSIERPL	9	Unmodified	_VGRSIERPL_					0	0	0		nc|ENSG00000136895|Q5VVW2-4|GARNL3;ENST00000481242.5_1_9:130127572-130155530:+|nuORF;ENST00000496711.5_1_9:130126995-130155530:+|nuORF;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3	nc|ENSG00000136895|Q5VVW2-4|GARNL3	nc|ENSG00000136895|Q5VVW2-4|GARNL3	MSMS	HCT116MG_D190212_S4	4	513.8052368164062	2	513.806365	1025.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.975	1	52.635	52.135	53.135	-0.34023								0	0	0	0.76834	1	19765	19765		6.7232	2.3939	1				36091	3442	23041	23162	34744	34744					0.08640253945759468
VGRSLRAA	8	Unmodified	_VGRSLRAA_					0	0	0			REV__TSHZ1|p.K450Efs*47|1|0.13|ENSG00000179981|chr18:75286754-75286755|TA/-|frameshift_variant	REV__TSHZ1|p.K450Efs*47|1|0.13|ENSG00000179981|chr18:75286754-75286755|TA/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	415.2537536621094	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.153	1	47.837	47.337	48.337	-0.31596								0	0	0	0.8837	1	18103	18103		0.79363	0	1		+		36092	18023	23042	23163	34745	34745					0.07187757539975337
VGRTKIMS	8	Unmodified	_VGRTKIMS_					0	0	0		ENST00000452532.1_1_X:55934586-55934826:+|nuORF	ENST00000452532.1_1_X:55934586-55934826:+|nuORF	ENST00000452532.1_1_X:55934586-55934826:+|nuORF	MSMS	HCT116MG_D190212_S3	3	446.2590026855469	2	446.257662	890.500772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.596	1	30.347	29.847	30.847	-0.24946								0	0	0	0.8837	1	11147	11147		2.3027	1.5091	1				36093	7995	23043	23164	34746	34746					0.051141487452582624
VGRVGPRA	8	Unmodified	_VGRVGPRA_					0	0	0			REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	811.4913330078125	1	811.489696	810.48242	1.2524	0.0010163	-0.22996	-0.00018661	1.0225	0.00082972	811.4892511458081	48.667	0.93888	48.351	48.036	48.975	-0.31596					40	17	3	0	0	0	0.87576	1	18249	18249		0.79363	0	1	41845000	+		36094	15600	23044	23165	34747	34747					0.06959774885547176
VGRWWAQIQ	9	Unmodified	_VGRWWAQIQ_					0	0	0			REV__ENSG00000229972|ENST00000440739|IQCF3	REV__ENSG00000229972|ENST00000440739|IQCF3	MSMS	HCT116MG_D190212_S1	1	381.8749694824219	3	381.873447	1142.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6389	1	9.6389	9.1389	10.139	0								0	0	0	0.77008	1	2926	2926		0.26902	0	1		+		36095	14318	23045	23166	34748	34748					0.03291673665603412
VGSAGAHL	8	Unmodified	_VGSAGAHL_					0	0	0			REV__ENST00000466808.2_1_6:26428955-26431840:+|nuORF	REV__ENST00000466808.2_1_6:26428955-26431840:+|nuORF	MSMS	HCT116MG_D190212_S2	2	356.19134521484375	2	356.192845	710.371138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.482	1	23.098	22.598	23.598	-0.38394								0	0	0	0.8837	1	8371	8371		2.8892	0	1		+		36096	15829	23046	23167	34749	34749					0.004367154576016219
VGSALPRR	8	Unmodified	_VGSALPRR_					0	0	0		ENST00000520709.5_1_8:92007907-92052988:-|nuORF;ENSG00000155099|ENST00000285419|PIP4P2	ENST00000520709.5_1_8:92007907-92052988:-|nuORF	ENST00000520709.5_1_8:92007907-92052988:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	428.2614440917969	2	428.261594	854.508634	0.022637	9.6944E-06	-0.38068	-0.00016303	-0.35804	-0.00015334	428.26133871333855	49.801	1.9832	49.485	49.028	51.011	-0.31524					82	37	4	0	0	0	0.86564	1	19146	19146		2.5775	0	1	279890000			36097	4241	23047	23168	34750	34750					0.07556044057025701
VGSAPKIK	8	Unmodified	_VGSAPKIK_					0	0	0			REV__ENST00000561547.5_1_16:28890323-28891133:-|nuORF	REV__ENST00000561547.5_1_16:28890323-28891133:-|nuORF	MSMS	HCT116MG_D190212_S2	2	400.25360107421875	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.32	1	32.09	31.59	32.59	-0.23009								0	0	0	0.8837	1	11954	11954		2.3027	1.5091	1		+		36098	16495	23048	23169	34751	34751					0.08903007593994516
VGSAPQQSYQ	10	Unmodified	_VGSAPQQSYQ_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MSMS	HCT116MG_D190212_S4	4	532.7534790039062	2	532.753995	1063.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.22	1	21.993	21.493	22.493	-0.22777								0	0	0	0.78084	1	7717	7717		31.268	2.1868	1		+		36099	10651	23049	23170	34752	34752					-0.03576912321477721
VGSAPSTQVSP	11	Unmodified	_VGSAPSTQVSP_					0	0	0		nc|ENSG00000103460|O15405-2|TOX3;ENSG00000103460|ENST00000219746|TOX3	nc|ENSG00000103460|O15405-2|TOX3	nc|ENSG00000103460|O15405-2|TOX3	MSMS	HCT116MG_D190212_S1	1	514.9197387695312	2	515.264196	1028.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.039	1	26.039	25.539	26.539	0								0	0	0	0.76989	1	9392	9392		35.612	0.68019	1				36100	1894	23050	23171	34753	34753					0.0007225833833217621
VGSAQLLAP	9	Unmodified	_VGSAQLLAP_					0	0	0			REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF	REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF	MSMS	HCT116MG_D190212_S3	3	428.24896240234375	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.596	1	31.326	30.826	31.826	-0.27028								0	0	0	0.76781	1	11549	11549		8.5933	0	1		+		36101	15940	23051	23172	34754	34754					0.05310399868744753
VGSAQLLAP	9	Unmodified	_VGSAQLLAP_					0	0	0			REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF	REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF	MSMS	HCT116MG_D190212_S4	4	428.24920654296875	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.795	1	26.488	25.988	26.988	-0.30621								0	0	0	0.76781	1	9562	9562		8.5933	0	1		+		36102	15940	23051	23172	34755	34755					0.05310399868744753
VGSARALR	8	Unmodified	_VGSARALR_					0	0	0		ENST00000327111.7_1_5:92919776-92920418:+|nuORF	ENST00000327111.7_1_5:92919776-92920418:+|nuORF	ENST00000327111.7_1_5:92919776-92920418:+|nuORF	MSMS	HCT116MG_D190212_S2	2	415.25372314453125	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.004	1	35.876	35.376	36.376	-0.12799								0	0	0	0.8837	1	13450	13450		8.5933	2.8329	1				36103	7139	23052	23173	34756	34756					0.07187757539975337
VGSAVLPAN	9	Unmodified	_VGSAVLPAN_					0	0	0		nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	MSMS	HCT116MG_D190212_S4	4	414.2337646484375	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.996	1	32.614	32.114	33.114	-0.38223								0	0	0	0.76718	1	12040	12040		10.824	0.75	1				36104	1298	23053	23174	34757	34757					0.03469826834657397
VGSAWSGAP	9	Unmodified	_VGSAWSGAP_					0	0	0		ENST00000475176.1_1_7:156754853-156755974:+|nuORF;ENST00000472491.1_1_7:156754865-156756721:+|nuORF;ENSG00000146909|ENST00000275820|NOM1	ENST00000475176.1_1_7:156754853-156755974:+|nuORF	ENST00000475176.1_1_7:156754853-156755974:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	416.2033386230469	2	416.20341	830.392267	-0.031388	-1.3064E-05	-0.066753	-2.7783E-05	-0.098141	-4.0847E-05	416.20335553781933	28.148	0.41712	27.942	27.655	28.072	-0.20593					11	7	2	0	0	0	0.2682	1	10150	10150		34.102	3.4659	1	3909200			36105	3966	23054	23175	34758	34758					-0.02971319233529357
VGSCRFMLG	9	Unmodified	_VGSCRFMLG_					0	0	0		nc|ENSG00000030066|Q12769|NUP160;ENSG00000030066|ENST00000378460|NUP160	nc|ENSG00000030066|Q12769|NUP160	nc|ENSG00000030066|Q12769|NUP160	MSMS	HCT116MG_D190212_S3	3	485.2354736328125	2	485.235873	968.457192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.912	1	23.85	23.35	24.35	-0.061449								0	0	0	0.56943	1	8466	8466		25.399	3.6527	1				36106	965	23055	23176	34759	34759					-0.028297840235268268
VGSDKLLK	8	Unmodified	_VGSDKLLK_					0	0	0			REV__CCDC174|p.K303Rfs*2|1|0.27|ENSG00000154781|chr3:14668131-14668131|A/-|frameshift_variant	REV__CCDC174|p.K303Rfs*2|1|0.27|ENSG00000154781|chr3:14668131-14668131|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.2642517089844	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.195	1	30.195	29.695	30.695	0								0	0	0	0.8837	1	11065	11065		2.5775	0	1		+		36107	10113	23056	23177	34760	34760					0.08254972902841473
VGSDQILQ	8	Unmodified	_VGSDQILQ_					0	0	0		ENSG00000114745|ENST00000319283|GORASP1;ENST00000466443.1_1_3:39142410-39149053:-|nuORF;ENST00000470910.5_1_3:39142410-39149053:-|nuORF;nc|ENSG00000114745|Q9BQQ3-2|GORASP1;nc|ENSG00000114745|Q9BQQ3-3|GORASP1;ENST00000441302.6_1_3:39142056-39149053:-|nuORF	ENSG00000114745|ENST00000319283|GORASP1	ENSG00000114745|ENST00000319283|GORASP1	MSMS	HCT116MG_D190212_S4	4	430.2282409667969	2	430.229625	858.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.23	1	25.933	25.433	26.433	-0.29707								0	0	0	0.8837	1	9334	9334		8.5933	0	1				36108	2431	23057	23178	34761	34761					0.009812191094397349
VGSDVGQRLP	10	Unmodified	_VGSDVGQRLP_					0	0	0		nc|ENSG00000107147|Q5JUK3|KCNT1	nc|ENSG00000107147|Q5JUK3|KCNT1	nc|ENSG00000107147|Q5JUK3|KCNT1	MULTI-MSMS	HCT116MG_D190212_S3	3	514.2796630859375	2	514.28018	1026.54581	0.33235	0.00017092	-0.33291	-0.00017121	-0.00056374	-2.8992E-07	514.2797299874268	26.199	0.36502	26.059	25.847	26.212	-0.13989					11	6	2	0	0	0	0.71349	1	9448	9448		19.257	1.1106	1	5488800			36109	9416	23058	23179	34762	34762					0.033596708121422125
VGSEEDSEL	9	Unmodified	_VGSEEDSEL_					0	0	0		tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	tr|U7SNB1|U7SNB1_FUSNURNApolymerasesigmafactorSigAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=sigAPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	482.7109680175781	2	482.708919	963.403285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.43	1	19.243	18.743	19.743	-0.18674								0	0	0	0.71969	1	6589	6589		18.135	1.1927	1				36110	18361	23059	23180	34763	34763					-0.07988006440564277
VGSEREKEPD	10	Unmodified	_VGSEREKEPD_					0	0	0			REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF	REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF	MSMS	HCT116MG_D190212_S4	4	573.2728881835938	2	573.275292	1144.53603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.89	1	16.724	16.224	17.224	-0.16664								0	0	0	0.92607	1	5563	5563		10.074	3.8681	1		+		36111	13228	23060	23181	34764	34764					-0.030455619839131032
VGSFATHA	8	Unmodified	_VGSFATHA_					0	0	0			REV__ENST00000482714.5_1_7:45067303-45110133:+|nuORF	REV__ENST00000482714.5_1_7:45067303-45110133:+|nuORF	MSMS	HCT116MG_D190212_S2	2	395.19744873046875	2	395.198128	788.381703	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.905	1	10.631	10.131	11.131	-0.27365								0	0	0	0.8837	1	3481	3481		0.79363	0	1		+		36112	15883	23061	23182	34765	34765					-0.020953018879708907
VGSFIRSQN	9	Unmodified	_VGSFIRSQN_					0	0	0		nc|ENSG00000148834|P78417-3|GSTO1;ENSG00000148834|ENST00000369713|GSTO1	nc|ENSG00000148834|P78417-3|GSTO1	nc|ENSG00000148834|P78417-3|GSTO1	MSMS	HCT116MG_D190212_S3	3	504.26544189453125	2	504.267073	1006.51959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.421	1	31.151	30.651	31.651	-0.27028								0	0	0	0.76718	1	11478	11478		10.824	0.75	1				36113	4034	23062	23183	34766	34766					0.016594016406543233
VGSFKKAFLKK	11	Unmodified	_VGSFKKAFLKK_					0	0	0		tr|U7SPY1|U7SPY1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01660PE=3SV=1	tr|U7SPY1|U7SPY1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01660PE=3SV=1	tr|U7SPY1|U7SPY1_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01660PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	418.26470947265625	3	418.264053	1251.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.258	1	27.929	27.429	28.429	-0.32987								0	0	0	0.95636	1	10300	10300		1.2148	0.588	1				36114	18386	23063	23184	34767	34767					0.15451405633234572
VGSFLIRIT	9	Unmodified	_VGSFLIRIT_					0	0	0		ZZEF1|p.D457G|1|0.37|ENSG00000074755|chr17:4105717-4105717|T/C|missense_variant	ZZEF1|p.D457G|1|0.37|ENSG00000074755|chr17:4105717-4105717|T/C|missense_variant	ZZEF1|p.D457G|1|0.37|ENSG00000074755|chr17:4105717-4105717|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	503.3067626953125	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.953	1	50.639	50.139	51.139	-0.31381								0	0	0	0.53872	1	19227	19227		26.884	3.7352	1				36115	18741	23064	23185	34768	34768					0.09974923719596518
VGSFMKKLRLR	11	Unmodified	_VGSFMKKLRLR_					0	0	0			REV__ENST00000520784.2_1_8:55609260-55609404:+|nuORF	REV__ENST00000520784.2_1_8:55609260-55609404:+|nuORF	MSMS	HCT116MG_D190212_S1	1	445.6092224121094	3	445.607825	1333.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.075	1	21.075	20.575	21.575	0								0	0	0	0.95954	1	7397	7397		1.3296	0.63198	1		+		36116	16232	23065	23186	34769	34769					0.14809655395697519
VGSFRRRQNR	10	Unmodified	_VGSFRRRQNR_					0	0	0		MRGPRX4|p.Q280R|1|0.08|ENSG00000179817|chr11:18174095-18174095|A/G|missense_variant;MRGPRX3|p.Q280R|1|0.15|ENSG00000179826|chr11:18138041-18138041|A/G|missense_variant	MRGPRX4|p.Q280R|1|0.08|ENSG00000179817|chr11:18174095-18174095|A/G|missense_variant	MRGPRX4|p.Q280R|1|0.08|ENSG00000179817|chr11:18174095-18174095|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	638.3596801757812	2	638.360693	1274.70683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.205	1	35.819	35.319	36.319	-0.38558								0	0	0	0.95351	1	13240	13240		3.9444	0.66309	1				36117	9340	23066	23187	34770	34770					0.08046857968747645
VGSFVPRPIIP	11	Unmodified	_VGSFVPRPIIP_					0	0	0		ENST00000594151.5_1_19:50354026-50354089:+|nuORF	ENST00000594151.5_1_19:50354026-50354089:+|nuORF	ENST00000594151.5_1_19:50354026-50354089:+|nuORF	MSMS	HCT116MG_D190212_S2	2	591.3591918945312	2	591.355691	1180.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.816	1	42.746	42.246	43.246	-0.069984								0	0	0	0.94416	1	16216	16216		9.3831	0	1				36118	9055	23067	23188	34771	34771					0.1137085719078641
VGSFVPRPIIP	11	Unmodified	_VGSFVPRPIIP_					0	0	0		ENST00000594151.5_1_19:50354026-50354089:+|nuORF	ENST00000594151.5_1_19:50354026-50354089:+|nuORF	ENST00000594151.5_1_19:50354026-50354089:+|nuORF	MSMS	HCT116MG_D190212_S4	4	591.3588256835938	2	591.355691	1180.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.904	1	42.529	42.029	43.029	-0.37493								0	0	0	0.95581	1	15786	15786		3.2813	1.4371	1				36119	9055	23067	23188	34772	34772					0.1137085719078641
VGSFVPRPIIP	11	Unmodified	_VGSFVPRPIIP_					0	0	0		ENST00000594151.5_1_19:50354026-50354089:+|nuORF	ENST00000594151.5_1_19:50354026-50354089:+|nuORF	ENST00000594151.5_1_19:50354026-50354089:+|nuORF	MSMS	HCT116MG_D190212_S4	4	591.3588256835938	2	591.355691	1180.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.04	1	43.666	43.166	44.166	-0.37373								0	0	0	0.95581	1	16210	16210		3.2813	0.28607	1				36120	9055	23067	23188	34773	34773					0.1137085719078641
VGSFVRRSH	9	Unmodified	_VGSFVRRSH_					0	0	0			REV__ENST00000506708.1_1_5:180236582-180236729:-|nuORF	REV__ENST00000506708.1_1_5:180236582-180236729:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	522.7888793945312	2	522.788507	1043.56246	0.37788	0.00019755	0.66428	0.00034728	1.0422	0.00054482	522.7887909001718	17.458	0.20914	17.108	16.978	17.187	-0.34933					7	3	3	0	0	0	0.59184	1	5970	5970		11.64	1.5664	1	6924000	+		36121	15672	23068	23189	34774	34774					0.042422164887511826
VGSGAQGLVNF	11	Unmodified	_VGSGAQGLVNF_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7750854492188	2	524.774731	1047.53491	0.36219	0.00019007	0.75702	0.00039726	1.1192	0.00058733	525.2768259118789	29.491	0.51961	29.141	28.825	29.345	-0.34921					13	9	2	0	0	0	0.69138	1	10659	10659		24.991	2.2547	1	4484400	+		36122	11427	23069	23190	34775	34775					0.013042684378433478
VGSGFGSSLGE	11	Unmodified	_VGSGFGSSLGE_					0	0	0			REV__FOXI3|p.L265F|1|0.08|ENSG00000214336|chr2:88448675-88448675|C/A|missense_variant	REV__FOXI3|p.L265F|1|0.08|ENSG00000214336|chr2:88448675-88448675|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	498.73492431640625	2	498.735271	995.45599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.436	1	25.33	24.83	25.83	-0.10618								0	0	0	0.54105	1	9081	9081		45.7	1.9272	1		+		36123	16833	23070	23191	34776	34776					-0.04192003587081672
VGSGGPPP	8	Unmodified	_VGSGGPPP_					0	0	0			REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant	REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	667.341064453125	1	667.340966	666.33369	0.88726	0.0005921	-0.49977	-0.00033352	0.38748	0.00025858	667.3403067708812	25.336	0.26004	25.23	25.1	25.36	-0.10618					6	4	2	0	0	0	0.66848	1	9069	9069		26.341	3.8886	1	4675400	+		36124	13227	23071	23192	34777	34777					-0.012823758080116932
VGSGGPPP	8	Unmodified	_VGSGGPPP_					0	0	0			REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant	REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	667.340966	666.33369	0.25767	0.00017195	0.61828	0.00041261	0.87595	0.00058456	667.3409540764839	25.626	0.20766	25.256	25.135	25.343	-0.36914	0.013231	0.00052649	NaN	26.341	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7044000	+		36125	13227	23071	23192							-0.012823758080116932
VGSGGPPP	8	Unmodified	_VGSGGPPP_					0	0	0			REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant	REV__MN1|p.L1153Wfs*25|1|0.4|ENSG00000169184|chr22:27797087-27797087|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	667.340966	666.33369	0.88726	0.0005921	-0.49977	-0.00033352	0.38748	0.00025858	667.3403067708812	25.336	0.26004	25.23	25.1	25.36	-0.10618	-0.013231	-0.00021964	NaN	26.341	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4675400	+		36126	13227	23071	23192							-0.012823758080116932
VGSGGVAY	8	Unmodified	_VGSGGVAY_					0	0	0			REV__NLRX1|p.L630Ffs*10|1|0.49|ENSG00000160703|chr11:119179902-119179902|G/-|frameshift_variant	REV__NLRX1|p.L630Ffs*10|1|0.49|ENSG00000160703|chr11:119179902-119179902|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	709.5316162109375	1	709.351531	708.344254	0.93061	0.00066013	-0.108	-7.6612E-05	0.82261	0.00058352	709.3514044904886	23.193	0.46734	22.808	22.622	23.089	-0.3852					13	8	3	0	0	0	0.53394	1	8205	8205		38.151	13.477	1	36222000	+		36127	12839	23072	23193	34778	34778					-0.02158393153581528
VGSGGVAY	8	Unmodified	_VGSGGVAY_					0	0	0			REV__NLRX1|p.L630Ffs*10|1|0.49|ENSG00000160703|chr11:119179902-119179902|G/-|frameshift_variant	REV__NLRX1|p.L630Ffs*10|1|0.49|ENSG00000160703|chr11:119179902-119179902|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	709.5316162109375	1	709.351531	708.344254	0.93061	0.00066013	-0.108	-7.6612E-05	0.82261	0.00058352	709.3514044904886	23.193	0.46734	22.808	22.622	23.089	-0.3852					13	8	3	0	0	0	0.22398	1	8205	8205		38.151	18.712	1	36222000	+		36128	12839	23072	23193	34779	34779					-0.02158393153581528
VGSGKLRR	8	Unmodified	_VGSGKLRR_					0	0	0			REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF	REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	872.5430908203125	1	872.54246	871.535184	0.75335	0.00065733	-0.0012528	-1.0931E-06	0.7521	0.00065624	872.5422685506625	49.184	0.70955	49.03	48.834	49.543	-0.15405					36	13	4	0	0	0	0.87576	1	18808	18808		0.79363	0.79363	1	1133800000	+		36129	10768	23073	23194	34780	34780					0.0942773294835888
VGSGLRFCYYA	11	Unmodified	_VGSGLRFCYYA_					0	0	0		MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant;ENSG00000179455|ENST00000314520|MKRN3;ENST00000568945.2_1_15:23811631-23811987:+|nuORF	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MKRN3|p.N325Qfs*2|1|0.36|ENSG00000179455|chr15:23566750-23566751|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	618.2965698242188	2	618.297516	1234.58048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.045	1	41.669	41.169	42.169	-0.3762								0	0	0	0.95113	1	15438	15438		5.7319	2.1354	1				36130	5559	23074	23195	34781	34781					-0.027428293714137908
VGSGLVKLKR	10	Unmodified	_VGSGLVKLKR_					0	0	0			REV__ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant	REV__ERBB3|p.A805Gfs*22|1|0.1|ENSG00000065361|chr12:56097177-56097178|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	528.8480224609375	2	528.848033	1055.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.47	1	23.086	22.586	23.586	-0.38438								0	0	0	0.91279	1	8366	8366		13.042	0.80181	1		+		36131	10699	23075	23196	34782	34782					0.1558999039361879
VGSGPHPPDTQ	11	Unmodified	_VGSGPHPPDTQ_					0	0	0		TNS3|p.S1335Gfs*89|1|0.09|ENSG00000136205|chr7:47283791-47283792|-/CAGGGCCTTCATCCTGGACCAGGGTGATGCC|frameshift_variant;TNS3|p.L1417Cfs*22|1|0.13|ENSG00000136205|chr7:47278165-47278165|G/-|frameshift_variant;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3	TNS3|p.S1335Gfs*89|1|0.09|ENSG00000136205|chr7:47283791-47283792|-/CAGGGCCTTCATCCTGGACCAGGGTGATGCC|frameshift_variant	TNS3|p.S1335Gfs*89|1|0.09|ENSG00000136205|chr7:47283791-47283792|-/CAGGGCCTTCATCCTGGACCAGGGTGATGCC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	546.7615966796875	2	546.259445	1090.50434	0.49194	0.00026872	0.29343	0.00016029	0.78537	0.00042901	546.2592642129317	19.376	0.93086	19.189	18.609	19.54	-0.18674					33	17	3	0	0	0	0.70377	1	6621	6621		20.415	2.0414	1	4892600			36132	3400	23076	23197	34783	34783					-0.03729509947220322
VGSGPHSPDTQ	11	Unmodified	_VGSGPHSPDTQ_					0	0	0		TNS3|p.P653S|1|0.42|ENSG00000136205|chr7:47368689-47368689|G/A|missense_variant	TNS3|p.P653S|1|0.42|ENSG00000136205|chr7:47368689-47368689|G/A|missense_variant	TNS3|p.P653S|1|0.42|ENSG00000136205|chr7:47368689-47368689|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	541.2492065429688	2	541.249077	1080.4836	0.39101	0.00021164	-0.13249	-7.1708E-05	0.25853	0.00013993	541.2491305083494	18.978	0.67576	18.791	18.297	18.973	-0.18674					16	12	2	0	0	0	0.69138	1	6434	6434		24.991	2.2547	1	1254000			36133	18280	23077	23198	34784	34784					-0.053421003268795175
VGSGQLHYSVP	11	Unmodified	_VGSGQLHYSVP_					0	0	0		ENSG00000204961|ENST00000532602|PCDHA9;PCDHA9|p.K764Pfs*50|1|0.23|ENSG00000204961|chr5:140850784-140850785|-/CC|frameshift_variant;ENSG00000081842|ENST00000529310|PCDHA6;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;nc|ENSG00000081842|Q9UN73-2|PCDHA6;nc|ENSG00000081842|Q9UN73-3|PCDHA6;PCDHA6|p.Q756Rfs*27|1|0.21|ENSG00000081842|chr5:140830355-140830355|G/-|frameshift_variant;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	ENSG00000204961|ENST00000532602|PCDHA9	ENSG00000204961|ENST00000532602|PCDHA9	MSMS	HCT116MG_D190212_S3	3	572.232666015625	2	572.293288	1142.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.133	1	28.911	28.411	29.411	-0.22195								0	0	0	0.93717	1	10572	10572		13.042	0.80181	1				36134	6360	23078	23199	34785	34785					0.006439399836153825
VGSGRSVP	8	Unmodified	_VGSGRSVP_					0	0	0			REV__ENSG00000092295|ENST00000206765|TGM1	REV__ENSG00000092295|ENST00000206765|TGM1	MSMS	HCT116MG_D190212_S2	2	379.7109375	2	379.711402	757.408252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.088	1	44.009	43.509	44.509	-0.078373								0	0	0	0.8837	1	16735	16735		2.8892	0	1		+		36135	11015	23079	23200	34786	34786					0.019843870033696476
VGSGTEAYVLV	11	Unmodified	_VGSGTEAYVLV_					0	0	0		ENSG00000176125|ENST00000388761|UFSP1;nc|ENSG00000176125|Q6NVU6|UFSP1	ENSG00000176125|ENST00000388761|UFSP1	ENSG00000176125|ENST00000388761|UFSP1	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.3172607421875	2	547.790047	1093.56554	0.38032	0.00020834	-0.27379	-0.00014998	0.10654	5.836E-05	547.7898388313445	38.516	0.26472	38.432	38.227	38.492	-0.084618					7	4	3	0	0	0	0.32355	1	14425	14425		22.736	5.6234	1	8400500			36136	5409	23080	23201	34787	34787					0.022500020322240744
VGSGTSNNSQA	11	Unmodified	_VGSGTSNNSQA_					0	0	0		TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1;ENST00000528807.1_1_11:6637814-6638385:-|nuORF	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	511.2286682128906	2	511.230884	1020.44722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.396	1	25.396	24.896	25.896	0								0	0	0	0.9387	1	9133	9133		12.241	4.3305	1				36137	4841	23081	23202	34788	34788					-0.06218977223568345
VGSGWHQQARN	11	Unmodified	_VGSGWHQQARN_					0	0	0			REV__ENST00000461116.1_1_7:44157158-44161472:-|nuORF	REV__ENST00000461116.1_1_7:44157158-44161472:-|nuORF	MSMS	HCT116MG_D190212_S4	4	620.3013916015625	2	620.30251	1238.59047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.156	1	22.913	22.413	23.413	-0.24328								0	0	0	0.94416	1	8093	8093		9.3831	0.63772	1		+		36138	11306	23082	23203	34789	34789					-0.01928505321825469
VGSHDVPPPP	10	Unmodified	_VGSHDVPPPP_					0	0	0			REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	501.59783935546875	2	501.256174	1000.49779	0.33781	0.00016933	-0.30235	-0.00015156	0.035451	1.777E-05	501.256141571646	32.527	0.78085	32.296	31.787	32.567	-0.23009					50	14	5	0	0	0	0.32398	1	12107	12107		48.346	4.5735	1	192140000	+		36139	12911	23083	23204	34790	34790					-0.002434031079133092
VGSHRRVRLN	10	Unmodified	_VGSHRRVRLN_					0	0	0		ENSG00000234186|ENST00000505035|C16orf82;nc|nan|Q7Z2V1|C16orf82	ENSG00000234186|ENST00000505035|C16orf82	ENSG00000234186|ENST00000505035|C16orf82	MSMS	HCT116MG_D190212_S3	3	597.353759765625	2	597.352337	1192.69012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.04	1	23.002	22.502	23.502	-0.037903								0	0	0	0.94107	1	8115	8115		6.7232	0.51738	1				36140	6516	23084	23205	34791	34791					0.10148357082812254
VGSHRSSIKC	10	Unmodified	_VGSHRSSIKC_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MSMS	HCT116MG_D190212_S3	3	537.2774047851562	2	537.279657	1072.54476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.527	1	20.561	20.061	21.061	0.034473								0	0	0	0.92607	1	7104	7104		10.074	1.3285	1				36141	3948	23085	23206	34792	34792					0.011391331715913111
VGSIQRSIR	9	Unmodified	_VGSIQRSIR_					0	0	0		ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	ENSG00000135540|ENST00000343505|NHSL1	ENSG00000135540|ENST00000343505|NHSL1	MULTI-MSMS	HCT116MG_D190212_S2	2	508.30426025390625	2	508.30399	1014.59343	0.53521	0.00027205	-0.072742	-3.6975E-05	0.46247	0.00023507	508.30397033611285	22.307	0.31161	21.922	21.739	22.051	-0.3852					7	5	2	0	0	0	0.34272	1	7923	7923		26.268	0.24744	1	16489000			36142	3355	23086	23207	34793	34793					0.08671369802993922
VGSIRQNGWPD	11	Unmodified	_VGSIRQNGWPD_					0	0	0			REV__ENSG00000132763|ENST00000401061|MMACHC	REV__ENSG00000132763|ENST00000401061|MMACHC	MSMS	HCT116MG_D190212_S4	4	614.8087158203125	2	614.807094	1227.59963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.643	1	23.395	22.895	23.895	-0.24775								0	0	0	0.9387	1	8289	8289		12.241	1.4167	1		+		36143	12001	23087	23208	34794	34794					-0.005061567561597258
VGSIRTSSTV	10	Unmodified	_VGSIRTSSTV_					0	0	0		chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C;nc|ENSG00000175063|O00762-4|UBE2C;chr20:45814470-45815390|467|14.73|0.65|4.5|+|ENST00000335046|UBE2C,UBE2C	chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C	chr20:45815540-45815854|455|13.48|0.56|4.59|+|ENST00000617055|UBE2C,UBE2C	MULTI-MSMS	HCT116MG_D190212_S2	2	503.7794494628906	2	503.780013	1005.54547	0.43517	0.00021923	-1.15	-0.00057936	-0.71486	-0.00036013	503.7791364563087	19.232	0.26037	18.862	18.68	18.94	-0.3695					6	4	2	0	0	0	0.83158	1	6674	6674		9.3831	0	1	3476700			36144	454	23088	23209	34795	34795					0.04292251092272181
VGSIRYNYL	9	Unmodified	_VGSIRYNYL_					0	0	0		FGFR4|p.G687Afs*35|1|0.23|ENSG00000160867|chr5:177096644-177096644|G/-|frameshift_variant;FGFR4|p.E717Rfs*8|1|0.44|ENSG00000160867|chr5:177096729-177096730|-/C|frameshift_variant;nc|ENSG00000160867|P22455-2|FGFR4;ENSG00000160867|ENST00000292408|FGFR4	FGFR4|p.G687Afs*35|1|0.23|ENSG00000160867|chr5:177096644-177096644|G/-|frameshift_variant	FGFR4|p.G687Afs*35|1|0.23|ENSG00000160867|chr5:177096644-177096644|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	542.791015625	2	542.792924	1083.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.328	1	28.328	27.828	28.828	0								0	0	0	0.76575	1	10316	10316		15.847	1.0089	1				36145	4468	23089	23210	34796	34796					0.03285145334552908
VGSIVGPGEP	10	Unmodified	_VGSIVGPGEP_					0	0	0			REV__TTN|p.V25212G|1|0.24|ENSG00000155657|chr2:178565574-178565574|A/C|missense_variant	REV__TTN|p.V25212G|1|0.24|ENSG00000155657|chr2:178565574-178565574|A/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	456.244873046875	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.843	1	25.715	25.215	26.215	-0.12795								0	0	0	0.87399	1	9245	9245		19.257	1.122	1		+		36146	18030	23090	23211	34797	34797					0.017177921435290955
VGSIVGPGEP	10	Unmodified	_VGSIVGPGEP_					0	0	0			REV__TTN|p.V25212G|1|0.24|ENSG00000155657|chr2:178565574-178565574|A/C|missense_variant	REV__TTN|p.V25212G|1|0.24|ENSG00000155657|chr2:178565574-178565574|A/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	456.2436218261719	2	456.245275	910.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.028	1	28.688	28.188	29.188	-0.34059								0	0	0	0.87399	1	10465	10465		19.257	1.1106	1		+		36147	18030	23090	23211	34798	34798					0.017177921435290955
VGSKFDDR	8	Unmodified	_VGSKFDDR_					0	0	0			REV__NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant	REV__NOL8|p.D1050*|1|0.39|ENSG00000198000|chr9:92301578-92301579|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	462.234130859375	2	462.232699	922.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.945	1	23.687	23.187	24.187	-0.25816								0	0	0	0.8837	1	8411	8411		12.532	0	1		+		36148	14103	23091	23212	34799	34799					-0.013482626590530344
VGSKGGDI	8	Unmodified	_VGSKGGDI_					0	0	0		nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	MULTI-MSMS	HCT116MG_D190212_S2	2	366.6979064941406	2	366.697961	731.381368	-0.082545	-3.0269E-05	0.4532	0.00016619	0.37065	0.00013592	366.69791678950287	27.145	0.26351	26.792	26.659	26.923	-0.35254					6	4	2	0	0	0	0.64404	1	9875	9875		28.487	5.3384	1	16134000			36149	3293	23092	23213	34800	34800					0.00493278392184493
VGSKGKGS	8	Unmodified	_VGSKGKGS_					0	0	0		nc|ENSG00000165623|P07492-3|GRP	nc|ENSG00000165623|P07492-3|GRP	nc|ENSG00000165623|P07492-3|GRP	MULTI-MSMS	HCT116MG_D190212_S1	1	719.4052734375	1	719.404629	718.397353	0.81679	0.0005876	1.7089	0.0012294	2.5257	0.001817	719.4056494807422	45.477	0.57412	45.477	45.244	45.818	0					13	10	2	0	0	0	0.86858	1	17240	17240		2.0598	0	1	13230000			36150	9532	23093	23214	34801	34801					0.026889846290941932
VGSKPLHVT	9	Unmodified	_VGSKPLHVT_					0	0	0		nc|ENSG00000174740|Q96DU9-2|PABPC5;ENSG00000174740|ENST00000312600|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	MSMS	HCT116MG_D190212_S3	3	469.2760314941406	2	469.276909	936.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.223	1	34.924	34.424	35.424	-0.29922								0	0	0	0.76718	1	12994	12994		10.824	0.64053	1				36151	5345	23094	23215	34802	34802					0.06845777651415119
VGSKPLHVT	9	Unmodified	_VGSKPLHVT_					0	0	0		nc|ENSG00000174740|Q96DU9-2|PABPC5;ENSG00000174740|ENST00000312600|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	MSMS	HCT116MG_D190212_S3	3	469.2767333984375	2	469.276909	936.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.014	1	54.722	54.222	55.222	-0.2918								0	0	0	0.76834	1	20859	20859		6.7232	0	1				36152	5345	23094	23215	34803	34803					0.06845777651415119
VGSKTEVAT	9	Unmodified	_VGSKTEVAT_					0	0	0		RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant;ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	RIMBP3B|p.G1589Afs*9|1|0.16|ENSG00000274600|chr22:21388619-21388619|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	446.2431335449219	2	446.242732	890.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7734	1	9.5118	9.0118	10.012	-0.26169								0	0	0	0.76902	1	3065	3065		4.3292	0	1				36153	5707	23095	23216	34804	34804					0.02129488280888836
VGSLAVGL	8	Unmodified	_VGSLAVGL_					0	0	0		ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	715.078369140625	1	715.434867	714.42759	0.68519	0.00049021	-0.042435	-3.036E-05	0.64276	0.00045985	715.4346760884428	43.586	0.25805	43.586	43.42	43.678	0					8	4	2	0	0	0	0.083541	1	16452	16452		98.807	7.9714	1	23943000			36154	7709	23096	23217	34805	34805					0.0589534329427579
VGSLAVGL	8	Unmodified	_VGSLAVGL_					0	0	0		ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	715.434867	714.42759	1.2843	0.00091883	-0.38352	-0.00027439	0.90077	0.00064444	715.434407741934	43.609	0.46339	43.536	43.355	43.818	-0.073376	-0.034773	-0.00013024	NaN	98.807	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177220000			36155	7709	23096	23217							0.0589534329427579
VGSLAVGL	8	Unmodified	_VGSLAVGL_					0	0	0		ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	715.434867	714.42759	0.7149	0.00051146	0.093678	6.702E-05	0.80858	0.00057848	715.4346636334743	43.869	0.46934	43.562	43.344	43.813	-0.30616	-0.0080137	0.00021117	NaN	98.807	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26256000			36156	7709	23096	23217							0.0589534329427579
VGSLGHDP	8	Unmodified	_VGSLGHDP_					0	0	0		ENST00000449944.5_1_22:38005063-38010197:+|nuORF	ENST00000449944.5_1_22:38005063-38010197:+|nuORF	ENST00000449944.5_1_22:38005063-38010197:+|nuORF	MSMS	HCT116MG_D190212_S2	2	391.28424072265625	2	391.195585	780.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.647	1	15.318	14.818	15.818	-0.32903								0	0	0	0.8837	1	5213	5213		10.183	0	1				36157	7977	23097	23218	34806	34806					-0.02235605750581726
VGSLGPRSAP	10	Unmodified	_VGSLGPRSAP_					0	0	0			REV__BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	REV__BCL9|p.V910Cfs*42|2|0.23|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	470.7639465332031	2	470.764166	939.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.223	1	21.995	21.495	22.495	-0.22777								0	0	0	0.81484	1	7718	7718		26.884	7.6267	1		+		36158	10038	23098	23219	34807	34807					0.04160303128992382
VGSLGQGPL	9	Unmodified	_VGSLGQGPL_					0	0	0		ENST00000334554.11_1_22:20132949-20133189:+|nuORF	ENST00000334554.11_1_22:20132949-20133189:+|nuORF	ENST00000334554.11_1_22:20132949-20133189:+|nuORF	MSMS	HCT116MG_D190212_S4	4	414.2330322265625	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.62	1	36.235	35.735	36.735	-0.38486								0	0	0	0.76694	1	13408	13408		11.64	3.047	1				36159	7184	23099	23220	34808	34808					0.03469826834657397
VGSLHAAYPPP	11	Unmodified	_VGSLHAAYPPP_					0	0	0			REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	HCT116MG_D190212_S2	2	554.7911987304688	2	554.792924	1107.57129	0.1896	0.00010519	-2.2087	-0.0012254	-2.0191	-0.0011202	554.7923355178286	14.379	0.47112	14.06	13.982	14.454	-0.31905					14	9	2	0	0	0	0.64329	1	4779	4779		30.637	1.555	1	3125100	+		36160	17097	23100	23221	34809	34809					0.02181145334543544
VGSLIMEMKP	10	Unmodified	_VGSLIMEMKP_					0	0	0			REV__OR2W1|p.G271Afs*35|1|0.07|ENSG00000204704|chr6:29044364-29044365|-/AAGTCATAGATAAAGACTAGAGTGAATAAGG|frameshift_variant	REV__OR2W1|p.G271Afs*35|1|0.07|ENSG00000204704|chr6:29044364-29044365|-/AAGTCATAGATAAAGACTAGAGTGAATAAGG|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	552.2625732421875	2	552.79322	1103.57189	0.42014	0.00023225	0.1379	7.6228E-05	0.55804	0.00030848	552.7931228209355	34.803	0.35757	34.417	34.236	34.594	-0.38606					8	6	2	0	0	0	0.28573	1	12726	12726		20.415	0	1	2898100	+		36161	14206	23101	23222	34810	34810					0.02424480667741591
VGSLLLDL	8	Unmodified	_VGSLLLDL_					0	0	0		ENSG00000136099|ENST00000377942|PCDH8;nc|ENSG00000136099|O95206-2|PCDH8;PCDH8|p.L308Pfs*42|1|0.27|ENSG00000136099|chr13:52847514-52847515|-/G|frameshift_variant	ENSG00000136099|ENST00000377942|PCDH8	ENSG00000136099|ENST00000377942|PCDH8	MSMS	HCT116MG_D190212_S2	2	415.2535095214844	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.739	1	45.637	45.137	46.137	-0.1014								0	0	0	0.8837	1	17402	17402		10.183	0	1				36162	3395	23102	23223	34811	34811					0.07456168154271836
VGSLLTMI	8	Unmodified	_VGSLLTMI_					0	0	0			REV__HNF1B|p.P437L|1|0.36|ENSG00000275410|chr17:37704946-37704946|G/A|missense_variant	REV__HNF1B|p.P437L|1|0.36|ENSG00000275410|chr17:37704946-37704946|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	417.2442321777344	2	417.243689	832.472826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.317	1	23.317	22.817	23.817	0								0	0	0	0.8837	1	8298	8298		10.183	0	1		+		36163	16887	23103	23224	34812	34812					0.0498882576515598
VGSLSDRPPP	10	Unmodified	_VGSLSDRPPP_					0	0	0		ENST00000495858.1_1_21:38602860-38605737:-|nuORF	ENST00000495858.1_1_21:38602860-38605737:-|nuORF	ENST00000495858.1_1_21:38602860-38605737:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.7748413085938	2	512.774731	1023.53491	0.13421	6.8819E-05	0.11744	6.022E-05	0.25165	0.00012904	512.7747737170982	15.528	1.3042	15.201	14.706	16.011	-0.32684					39	24	2	0	0	0	0.80458	1	5101	5101		11.64	0.84079	1	11211000			36164	8384	23104	23225	34813	34813					0.024082684378413433
VGSLSDRPPP	10	Unmodified	_VGSLSDRPPP_					0	0	0		ENST00000495858.1_1_21:38602860-38605737:-|nuORF	ENST00000495858.1_1_21:38602860-38605737:-|nuORF	ENST00000495858.1_1_21:38602860-38605737:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	514.2437744140625	2	512.774731	1023.53491	-0.043429	-2.2269E-05	0.33085	0.00016965	0.28743	0.00014738	512.7748333746512	18.866	0.46945	18.503	18.321	18.79	-0.36325					25	8	4	0	0	0	0.74117	1	6592	6592		16.942	2.104	1	208170000			36165	8384	23104	23225	34814	34814					0.024082684378413433
VGSLSQRKRQ	10	Unmodified	_VGSLSQRKRQ_					0	0	0		CACNA1D|p.M297Cfs*13|1|0.37|ENSG00000157388|chr3:53665778-53665778|A/-|frameshift_variant;CACNA1D|p.F303Lfs*7|2|0.28|ENSG00000157388|chr3:53665796-53665796|T/-|frameshift_variant;CACNA1D|p.A841Dfs*10|1|0.73|ENSG00000157388|chr3:53732862-53732865|GCCG/-|frameshift_variant;CACNA1D|p.F1318Sfs*6|1|0.39|ENSG00000157388|chr3:53770457-53770457|T/-|frameshift_variant;nc|ENSG00000157388|Q01668-4|CACNA1D;CACNA1D|p.N2051Tfs*16|1|0.26|ENSG00000157388|chr3:53810254-53810254|A/-|frameshift_variant;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D	CACNA1D|p.M297Cfs*13|1|0.37|ENSG00000157388|chr3:53665778-53665778|A/-|frameshift_variant	CACNA1D|p.M297Cfs*13|1|0.37|ENSG00000157388|chr3:53665778-53665778|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	579.8412475585938	2	579.838728	1157.6629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.493	1	31.123	30.623	31.623	-0.37026								0	0	0	0.95507	1	11432	11432		3.5965	0.31518	1				36166	304	23105	23226	34815	34815					0.09037828751752386
VGSLSWGAQP	10	Unmodified	_VGSLSWGAQP_					0	0	0			REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF	REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	501.25665283203125	2	501.256174	1000.49779	0.54451	0.00027294	-0.26795	-0.00013431	0.27656	0.00013863	501.2560214660288	32.661	0.78115	32.376	31.883	32.664	-0.2851					47	14	4	0	0	0	0.26262	1	11860	11860		53.833	2.203	1	70033000	+		36167	15865	23106	23227	34816	34816					-0.002434031079133092
VGSLSWGAQP	10	Unmodified	_VGSLSWGAQP_					0	0	0			REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF	REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	501.256174	1000.49779	0.39995	0.00020048	-0.16782	-8.4119E-05	0.23213	0.00011636	501.25604309866316	32.754	0.62286	32.375	31.949	32.572	-0.37924	0.055997	8.0104E-05	NaN	53.833	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22665000	+		36168	15865	23106	23227							-0.002434031079133092
VGSLTVKAP	9	Unmodified	_VGSLTVKAP_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MSMS	HCT116MG_D190212_S3	3	436.2655029296875	2	436.26601	870.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.226	1	27.056	26.556	27.556	-0.16933								0	0	0	0.76781	1	9802	9802		8.5933	1.304	1			+	36169	537	23107	23228	34817	34817					0.0770297290284816
VGSLVHHITAH	11	Unmodified	_VGSLVHHITAH_					0	0	0		DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2	DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant	DCHS2|p.C2517Sfs*5|1|0.13|ENSG00000197410|chr4:154235737-154235737|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	585.8226928710938	2	585.822547	1169.63054	0.21722	0.00012725	0.76912	0.00045057	0.98634	0.00057782	585.8227610116868	30.287	0.30857	30.002	29.822	30.13	-0.28453					12	5	3	0	0	0	0.70991	1	11129	11129		18.146	18.146	1	123040000			36170	648	23108	23229	34818	34818					0.05251041348742547
VGSLVTYGVL	10	Unmodified	_VGSLVTYGVL_					0	0	0			REV__PAQR4|p.A160V|1|0.28|ENSG00000162073|chr16:2971605-2971605|C/T|missense_variant	REV__PAQR4|p.A160V|1|0.28|ENSG00000162073|chr16:2971605-2971605|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	504.2917785644531	2	504.292225	1006.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.757	1	32.757	32.257	33.257	0								0	0	0	0.93854	1	12099	12099		7.2892	0	1		+		36171	12869	23109	23230	34819	34819					0.06687511245786482
VGSLYYHHDKF	11	Unmodified	_VGSLYYHHDKF_					0	0	0			REV__ENST00000533107.3_1_19:1799652-1806029:-|nuORF	REV__ENST00000533107.3_1_19:1799652-1806029:-|nuORF	MSMS	HCT116MG_D190212_S4	4	683.3363037109375	2	683.332944	1364.65134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.781	1	21.563	21.063	22.063	-0.21832								0	0	0	0.94416	1	7539	7539		9.3831	2.2814	1		+		36172	10012	23110	23231	34820	34820					-0.016404130622731827
VGSMMGSLFSL	11	Unmodified	_VGSMMGSLFSL_					0	0	0		ENST00000497341.5_1_2:27480525-27481182:-|nuORF;ENSG00000115194|ENST00000233535|SLC30A3	ENST00000497341.5_1_2:27480525-27481182:-|nuORF	ENST00000497341.5_1_2:27480525-27481182:-|nuORF	MSMS	HCT116MG_D190212_S2	2	376.69012451171875	3	376.852444	1127.5355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.473	1	19.104	18.604	19.604	-0.3695								0	0	0	0.95023	1	6754	6754		2.8433	0	1				36173	2450	23111	23232	34821	34821					-0.023163962289572737
VGSMQKKNEP	10	Unmodified	_VGSMQKKNEP_					0	0	0			REV__tr|U7T1T8|U7T1T8_FUSNUMethionyl-tRNAformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fmtPE=3SV=1	REV__tr|U7T1T8|U7T1T8_FUSNUMethionyl-tRNAformyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=fmtPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	373.19525146484375	3	373.193858	1116.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.74	1	24.74	24.24	25.24	0								0	0	0	0.91279	1	8870	8870		7.9454	1.7536	1		+		36174	17905	23112	23233	34822	34822					0.0061258024893504626
VGSMTCHMFG	10	Unmodified	_VGSMTCHMFG_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MSMS	HCT116MG_D190212_S1	1	357.1479797363281	3	357.146974	1068.41909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.566	1	33.566	33.066	34.066	0								0	0	0	0.96377	1	12426	12426		0.69767	0	1		+		36175	11410	23113	23234	34823	34823					-0.11238038000487904
VGSMTCHMFG	10	Unmodified	_VGSMTCHMFG_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MSMS	HCT116MG_D190212_S4	4	357.1474914550781	3	357.146974	1068.41909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.6	1	27.278	26.778	27.778	-0.32157								0	0	0	0.95351	1	9888	9888		1.9064	0	1		+		36176	11410	23113	23234	34824	34824					-0.11238038000487904
VGSPDTLFFR	10	Unmodified	_VGSPDTLFFR_					0	0	0			REV__ENST00000556431.1_1_14:105222603-105223098:+|nuORF	REV__ENST00000556431.1_1_14:105222603-105223098:+|nuORF	MSMS	HCT116MG_D190212_S2	2	569.7999267578125	2	569.798206	1137.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.176	1	22.79	22.29	23.29	-0.3852								0	0	0	0.90892	1	8247	8247		13.906	2.2658	1		+		36177	16465	23114	23235	34825	34825					0.01857127988978391
VGSPGKQNPPA	11	Unmodified	_VGSPGKQNPPA_					0	0	0			REV__ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant	REV__ARHGAP31|p.A1199Rfs*106|1|0.34|ENSG00000031081|chr3:119415522-119415522|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	526.280517578125	2	526.28018	1050.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.98	1	17.624	17.124	18.124	-0.35647								0	0	0	0.93295	1	6153	6153		15.248	1.3424	1		+		36178	9977	23115	23236	34826	34826					0.022556708121328484
VGSPGLLFW	9	Unmodified	_VGSPGLLFW_					0	0	0			REV__ENST00000473645.6_2_3:167452652-167452715:-|nuORF	REV__ENST00000473645.6_2_3:167452652-167452715:-|nuORF	MSMS	HCT116MG_D190212_S4	4	488.2699279785156	2	488.268553	974.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.515	1	25.236	24.736	25.736	-0.27958								0	0	0	0.71969	1	9046	9046		18.135	2.2878	1		+		36179	15893	23116	23237	34827	34827					0.03427276765467013
VGSPGLPG	8	Unmodified	_VGSPGLPG_					0	0	0		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1;ENST00000479100.1_1_1:32136193-32138672:-|nuORF;COL5A2|p.D559Ifs*16|1|0.42|ENSG00000204262|chr2:189064598-189064598|C/-|frameshift_variant;COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;COL5A2|p.T1388Nfs*21|1|0.03|ENSG00000204262|chr2:189035106-189035107|-/CTGTGGT|frameshift_variant;ENSG00000204262|ENST00000374866|COL5A2;ENST00000486080.5_1_6:70926602-70955360:-|nuORF;ENST00000489611.5_1_6:70926602-70990065:-|nuORF;nc|ENSG00000112280|P20849-2|COL9A1;ENSG00000112280|ENST00000357250|COL9A1	nc|ENSG00000084636|Q07092-2|COL16A1;COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant;ENST00000486080.5_1_6:70926602-70955360:-|nuORF	COL5A2|p.L1390Ffs*17|1|0.31|ENSG00000204262|chr2:189035099-189035100|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	683.372802734375	1	683.372266	682.36499	1.0756	0.00073506	-0.48655	-0.00033249	0.58908	0.00040256	683.3717682059774	25.961	0.62579	25.833	25.598	26.224	-0.12795					14	11	2	0	0	0	0.25164	1	9327	9327		63.563	0	1	4134300			36180	1447;528;2336	23117	23238	34828	34828					0.011101972260917137
VGSPGPHARSP	11	Unmodified	_VGSPGPHARSP_					0	0	0		ENSG00000184814|ENST00000329447|PRR23B	ENSG00000184814|ENST00000329447|PRR23B	ENSG00000184814|ENST00000329447|PRR23B	MULTI-MSMS	HCT116MG_D190212_S1	1	531.2777099609375	2	531.277972	1060.54139	0.29397	0.00015618	-0.48543	-0.0002579	-0.19146	-0.00010172	531.2772459129649	25.68	0.83497	25.68	25.197	26.032	0					19	15	2	0	0	0	0.69749	1	9196	9196		22.736	5.2936	1	8537100			36181	5782	23118	23239	34829	34829					0.013542063892145961
VGSPPLGPPPP	11	Unmodified	_VGSPPLGPPPP_					0	0	0			REV__ENSG00000125753|ENST00000245932|VASP	REV__ENSG00000125753|ENST00000245932|VASP	MSMS	HCT116MG_D190212_S1	1	507.7831726074219	2	507.784567	1013.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.289	1	27.289	26.789	27.789	0								0	0	0	0.93374	1	9896	9896		14.838	3.198	1		+		36182	11817	23119	23240	34830	34830					0.04834644448612835
VGSPRKDGLV	10	Unmodified	_VGSPRKDGLV_					0	0	0		ENST00000589030.1_1_17:73759945-73761208:-|nuORF;GALK1|p.G137Vfs*27|1|0.07|ENSG00000108479|chr17:75763385-75763385|C/-|frameshift_variant;ENST00000592494.1_1_17:73759392-73761232:-|nuORF;ENSG00000108479|ENST00000588479|GALK1	ENST00000589030.1_1_17:73759945-73761208:-|nuORF	ENST00000589030.1_1_17:73759945-73761208:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	514.2978515625	2	514.298373	1026.58219	0.26331	0.00013542	0.15664	8.0558E-05	0.41995	0.00021598	514.2983735903462	52.406	0.67278	52.1	51.784	52.457	-0.30639					15	12	2	0	0	0	0.86339	1	19824	19824		6.7232	0	1	3191600			36183	2162	23120	23241	34831	34831					0.06996547708831713
VGSQEGPKDPE	11	Unmodified	_VGSQEGPKDPE_					0	0	0		ENST00000554756.1_1_14:24805383-24807435:-|nuORF;ENSG00000129465|ENST00000216274|RIPK3	ENST00000554756.1_1_14:24805383-24807435:-|nuORF	ENST00000554756.1_1_14:24805383-24807435:-|nuORF	MSMS	HCT116MG_D190212_S4	4	571.7697143554688	2	571.769842	1141.52513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.318	1	19.132	18.632	19.632	-0.18674								0	0	0	0.94012	1	6544	6544		11.495	0	1				36184	3035	23121	23242	34832	34832					-0.039969643581798664
VGSQFGRGP	9	Unmodified	_VGSQFGRGP_					0	0	0			REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	REV__AHNAK2|p.E5149Gfs*8|1|0.32|ENSG00000185567|chr14:104940005-104940006|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	452.7354431152344	2	452.735409	903.456264	-0.052799	-2.3904E-05	0.28917	0.00013092	0.23637	0.00010701	452.7354549188277	17.895	1.3532	17.976	17.482	18.835	0.081358					70	25	4	0	0	0	0.41514	1	6148	6148		21.747	0	1	115800000	+		36185	9899	23122	23243	34833	34833					0.0006746092343519194
VGSQKELASWS	11	Unmodified	_VGSQKELASWS_					0	0	0		ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENST00000451892.1_1_1:240307909-240308467:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	596.3045043945312	2	596.303852	1190.59315	0.55189	0.0003291	-0.14687	-8.7578E-05	0.40503	0.00024152	596.3036858589874	19.458	1.1975	19.517	19.126	20.323	0.05983					29	22	2	0	0	0	0.72792	1	6594	6594		11.495	2.1116	1	2844300			36186	7990	23123	23244	34834	34834					0.005479052925011274
VGSQKELASWS	11	Unmodified	_VGSQKELASWS_					0	0	0		ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENST00000451892.1_1_1:240307909-240308467:-|nuORF	ENST00000451892.1_1_1:240307909-240308467:-|nuORF	MSMS	HCT116MG_D190212_S4	4	596.3042602539062	2	596.303852	1190.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.701	1	19.507	19.007	20.007	-0.19367								0	0	0	0.94012	1	6699	6699		11.495	2.1116	1				36187	7990	23123	23244	34835	34835					0.005479052925011274
VGSREMGE	8	Unmodified	_VGSREMGE_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant;AP2A1|p.K165Sfs*69|1|0.29|ENSG00000196961|chr19:49791953-49791953|C/-|frameshift_variant	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MSMS	HCT116MG_D190212_S3	3	432.69573974609375	2	432.697635	863.380716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.433	1	23.394	22.894	23.894	-0.03968								0	0	0	0.82692	1	8273	8273		20.454	0	1				36188	6109	23124	23245	34836	34836					-0.056438843191585875
VGSREMGE	8	Unmodified	_VGSREMGE_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant;AP2A1|p.K165Sfs*69|1|0.29|ENSG00000196961|chr19:49791953-49791953|C/-|frameshift_variant	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MSMS	HCT116MG_D190212_S4	4	432.6954040527344	2	432.697635	863.380716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.574	1	23.326	22.826	23.826	-0.24775								0	0	0	0.82692	1	8261	8261		20.454	2.3073	1				36189	6109	23124	23245	34837	34837					-0.056438843191585875
VGSRGHWSP	9	Unmodified	_VGSRGHWSP_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	HCT116MG_D190212_S2	2	491.21734619140625	2	491.746308	981.478063	0.33988	0.00016714	-1.3931	-0.00068505	-1.0532	-0.00051792	491.74559394829606	24.957	0.31133	24.582	24.452	24.764	-0.37521					8	5	2	0	0	0	0.23301	1	8935	8935		15.847	1.0089	1	14696000	+		36190	13614	23125	23246	34838	34838					-0.013417343280025307
VGSRGSSG	8	Unmodified	_VGSRGSSG_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;TRIM24|p.R1009Kfs*10|1|0.49|ENSG00000122779|chr7:138584817-138584818|-/A|frameshift_variant;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	HCT116MG_D190212_S1	1	706.349609375	1	706.347842	705.340566	0.973	0.00068728	0.4885	0.00034505	1.4615	0.0010323	706.3479717741585	37.223	0.71719	37.223	37.042	37.759	0					26	13	3	0	0	0	0.86564	3	13883	13883;13897;14040		2.5775	0	1	221330000			36191	2782	23126	23247	34839;34840;34841	34839					-0.02389062927420582
VGSRHRSHHHS	11	Unmodified	_VGSRHRSHHHS_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	432.8851623535156	3	432.885409	1295.6344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.177	1	9.9782	9.4782	10.478	-0.1993								0	0	0	0.96208	1	3119	3119		0	0	1		+		36192	11295	23127	23248	34842	34842					-0.001594761048181681
VGSRLRQGRRA	11	Unmodified	_VGSRLRQGRRA_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MSMS	HCT116MG_D190212_S2	2	628.37744140625	2	628.376343	1254.73813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.423	1	24.043	23.543	24.543	-0.38003								0	0	0	0.94012	1	8751	8751		11.495	0	1		+		36193	11912	23128	23249	34843	34843					0.12095431002830992
VGSRNRKL	8	Unmodified	_VGSRNRKL_					0	0	0		ENST00000499842.1_1_17:48130923-48133065:-|nuORF	ENST00000499842.1_1_17:48130923-48133065:-|nuORF	ENST00000499842.1_1_17:48130923-48133065:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	464.7080993652344	2	465.2856	928.556647	0.18078	8.4112E-05	0.16063	7.4737E-05	0.3414	0.00015885	465.2855681931227	52.751	0.56876	52.563	52.451	53.02	-0.18726					14	10	2	0	0	0	0.33409	1	20397	20397		2.5775	0	1	6205600			36194	8419	23129	23250	34844	34844					0.08951117977085232
VGSRRGRRRTV	11	Unmodified	_VGSRRGRRRTV_					0	0	0		ENST00000523094.5_2_5:157285974-157286100:-|nuORF	ENST00000523094.5_2_5:157285974-157286100:-|nuORF	ENST00000523094.5_2_5:157285974-157286100:-|nuORF	MSMS	HCT116MG_D190212_S1	1	650.3955078125	2	650.395067	1298.77558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.799	1	47.799	47.299	48.299	0								0	0	0	0.95686	1	18171	18171		2.7352	0.45242	1				36195	8569	23130	23251	34845	34845					0.13814522268444307
VGSRSFSPTPL	11	Unmodified	_VGSRSFSPTPL_					0	0	0		ENST00000316715.8_1_X:13835310-13835454:-|nuORF	ENST00000316715.8_1_X:13835310-13835454:-|nuORF	ENST00000316715.8_1_X:13835310-13835454:-|nuORF	MSMS	HCT116MG_D190212_S4	4	574.3076782226562	2	574.308938	1146.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.927	1	30.563	30.063	31.063	-0.36416								0	0	0	0.94416	1	11203	11203		9.3831	0	1				36196	7085	23131	23252	34846	34846					0.03588513017712103
VGSSAPFSGN	10	Unmodified	_VGSSAPFSGN_					0	0	0			REV__ENSG00000144962|ENST00000351008|SPATA16	REV__ENSG00000144962|ENST00000351008|SPATA16	MULTI-MSMS	HCT116MG_D190212_S4	4	461.71746826171875	2	461.716882	921.41921	0.039712	1.8336E-05	0.43434	0.00020054	0.47405	0.00021888	461.7169372325432	19.49	1.4979	19.303	18.401	19.899	-0.18674					62	28	3	0	0	0	0.71349	1	6359	6359		19.257	1.1106	1	9367400	+		36197	12436	23132	23253	34847	34847					-0.04464255412995044
VGSSDDYG	8	Unmodified	_VGSSDDYG_					0	0	0		ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-3|TAS1R1	ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-3|TAS1R1	ENSG00000173662|ENST00000333172|TAS1R1	MSMS	HCT116MG_D190212_S1	1	400.1601867675781	2	400.158865	798.303177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.782	1	29.782	29.282	30.282	0								0	0	0	0.8837	1	10898	10898		5.7604	0	1				36198	5298;9555	23133	23254	34848	34848					-0.10404198983712831
VGSSGREVRRI	11	Unmodified	_VGSSGREVRRI_					0	0	0			REV__IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant	REV__IGSF9|p.D822Ifs*33|2|0.32|ENSG00000085552|chr1:159928924-159928924|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	608.3494873046875	2	608.34946	1214.68437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.214	1	34.915	34.415	35.415	-0.29922								0	0	0	0.95636	1	12990	12990		2.9952	0.93549	1		+		36199	10922	23134	23255	34849	34849					0.0856121378046737
VGSSKQVSKN	10	Unmodified	_VGSSKQVSKN_					0	0	0			REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF	REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MSMS	HCT116MG_D190212_S4	4	517.285888671875	2	517.285463	1032.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.009	1	29.652	29.152	30.152	-0.3571								0	0	0	0.94107	1	10861	10861		6.7232	0	1		+		36200	11746	23135	23256	34850	34850					0.041396534665636864
VGSSKRGRA	9	Unmodified	_VGSSKRGRA_					0	0	0		MARCO|p.N431K|1|0.38|ENSG00000019169|chr2:118993164-118993164|C/A|missense_variant	MARCO|p.N431K|1|0.38|ENSG00000019169|chr2:118993164-118993164|C/A|missense_variant	MARCO|p.N431K|1|0.38|ENSG00000019169|chr2:118993164-118993164|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	459.267578125	2	459.267407	916.520262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.396	1	51.396	50.896	51.896	0								0	0	0	0.76913	1	19635	19635		3.9444	0	1				36201	9317	23136	23257	34851	34851					0.058662410803776766
VGSSLTQPV	9	Unmodified	_VGSSLTQPV_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK;ENST00000511124.1_1_4:56304552-56315592:-|nuORF	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MSMS	HCT116MG_D190212_S4	4	444.243896484375	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.963	1	31.588	31.088	32.088	-0.37529								0	0	0	0.76913	1	11622	11622		3.9444	0.3479	1				36202	3309	23137	23258	34852	34852					0.02821792143527091
VGSSYQPMQ	9	Unmodified	_VGSSYQPMQ_					0	0	0		ENST00000539828.6_1_16:68119591-68225707:+|nuORF;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF	ENST00000539828.6_1_16:68119591-68225707:+|nuORF	ENST00000539828.6_1_16:68119591-68225707:+|nuORF	MSMS	HCT116MG_D190212_S3	3	498.7251281738281	2	498.726392	995.438231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.652	1	18.721	18.221	19.221	0.069159								0	0	0	0.56943	1	6348	6348		25.399	2.2509	1				36203	1274	23138	23259	34853	34853					-0.05967042113593379
VGSTEVSVAV	10	Unmodified	_VGSTEVSVAV_					0	0	0		ENST00000490848.5_1_15:42120322-42128845:+|nuORF;ENSG00000243789|ENST00000397299|JMJD7;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B	ENST00000490848.5_1_15:42120322-42128845:+|nuORF	ENST00000490848.5_1_15:42120322-42128845:+|nuORF	MSMS	HCT116MG_D190212_S4	4	474.2550354003906	2	474.25584	946.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.607	1	33.223	32.723	33.723	-0.38426								0	0	0	0.90023	1	12240	12240		15.847	2.3393	1				36204	6559	23139	23260	34854	34854					0.021737574523740477
VGSTRGVL	8	Unmodified	_VGSTRGVL_					0	0	0		PPP2R5B|p.E341Dfs*3|1|0.26|ENSG00000068971|chr11:64931774-64931775|-/TTCTT|frameshift_variant;nc|ENSG00000068971|Q15173-2|PPP2R5B;ENSG00000068971|ENST00000164133|PPP2R5B	PPP2R5B|p.E341Dfs*3|1|0.26|ENSG00000068971|chr11:64931774-64931775|-/TTCTT|frameshift_variant	PPP2R5B|p.E341Dfs*3|1|0.26|ENSG00000068971|chr11:64931774-64931775|-/TTCTT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	394.7346496582031	2	394.734877	787.455202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.18	1	20.18	19.68	20.68	0								0	0	0	0.8837	1	7039	7039		5.2307	0	1				36205	1210	23140	23261	34855	34855					0.052972465545167324
VGSTSKIKFKN	11	Unmodified	_VGSTSKIKFKN_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MSMS	HCT116MG_D190212_S1	1	604.8534545898438	2	604.853512	1207.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.624	1	26.624	26.124	27.124	0								0	0	0	0.95113	1	9628	9628		5.7319	0	1		+		36206	13049	23141	23262	34856	34856					0.09693347977213307
VGSTSLVH	8	Unmodified	_VGSTSLVH_					0	0	0			REV__ENSG00000140795|ENST00000394809|MYLK3	REV__ENSG00000140795|ENST00000394809|MYLK3	MSMS	HCT116MG_D190212_S4	4	400.21759033203125	2	400.21906	798.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.104	1	23.845	23.345	24.345	-0.25816								0	0	0	0.8837	1	8475	8475		10.183	0	1		+		36207	12310	23142	23263	34857	34857					0.016292538005700408
VGSTTREVYKE	11	Unmodified	_VGSTTREVYKE_					0	0	0		CCDC87|p.P639Hfs*3|2|0.25|ENSG00000182791|chr11:66591100-66591100|G/-|frameshift_variant;ENSG00000182791|ENST00000333861|CCDC87	CCDC87|p.P639Hfs*3|2|0.25|ENSG00000182791|chr11:66591100-66591100|G/-|frameshift_variant	CCDC87|p.P639Hfs*3|2|0.25|ENSG00000182791|chr11:66591100-66591100|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	424.2078552246094	3	423.55422	1267.64083	0.29294	0.00012408	-0.84356	-0.00035729	-0.55062	-0.00023322	423.55387048675124	24.28	0.15637	23.9	23.77	23.926	-0.38003					4	2	2	0	0	0	0.36397	1	8694	8694		10.315	3.2781	1	7484000			36208	357	23143	23264	34858	34858					0.017715594926585254
VGSTTVGPTTP	11	Unmodified	_VGSTTVGPTTP_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	HCT116MG_D190212_S3	3	508.7662658691406	2	508.766571	1015.51859	0.089512	4.5541E-05	-0.21711	-0.00011046	-0.1276	-6.4917E-05	508.76629439571786	20.661	0.57259	20.696	20.194	20.766	0.034473					26	10	3	0	0	0	0.31512	1	7048	7048		62.573	2.4988	1	11230000			36209	6447	23144	23265	34859	34859					0.011451424810957178
VGSTTVGPTTP	11	Unmodified	_VGSTTVGPTTP_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	HCT116MG_D190212_S4	4	508.76629638671875	2	508.766571	1015.51859	0.20271	0.00010313	-0.40927	-0.00020822	-0.20656	-0.00010509	508.76624188842254	20.979	0.51911	20.769	20.396	20.915	-0.20959					15	9	2	0	0	0	0.60935	1	7188	7188		34.402	0	1	6211200			36210	6447	23144	23265	34860	34860					0.011451424810957178
VGSTYKSDSLA	11	Unmodified	_VGSTYKSDSLA_					0	0	0			REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	563.7623291015625	2	564.282586	1126.55062	0.42542	0.00024006	-0.57565	-0.00032483	-0.15022	-8.4768E-05	564.2824772884902	21.14	0.36415	20.757	20.443	20.807	-0.38288					9	6	2	0	0	0	0.35292	1	7343	7343		15.248	15.248	1	3651000	+		36211	17921	23145	23266	34861	34861					-0.007594898357638158
VGSTYKSDSLA	11	Unmodified	_VGSTYKSDSLA_					0	0	0			REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	REV__tr|U7T2D7|U7T2D7_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00531PE=4SV=1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	564.282586	1126.55062	0.28955	0.00016339	-1.1473	-0.00064739	-0.85773	-0.000484	564.2817784427016	20.492	0.52053	20.528	20.247	20.768	0.035833	-0.09396	-0.0004703	NaN	10.8	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2878900	+		36212	17921	23145	23266							-0.007594898357638158
VGSVFTPY	8	Unmodified	_VGSVFTPY_					0	0	0			REV__nc|ENSG00000175003|O15245-2|SLC22A1	REV__nc|ENSG00000175003|O15245-2|SLC22A1	MSMS	HCT116MG_D190212_S4	4	435.2239990234375	2	435.223811	868.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.491	1	29.142	28.642	29.642	-0.34921								0	0	0	0.8837	1	10652	10652		6.3541	0	1		+		36213	17220	23146	23267	34862	34862					-0.006409779139175953
VGSVFTPYLEA	11	Unmodified	_VGSVFTPYLEA_					0	0	0			REV__nc|ENSG00000175003|O15245-2|SLC22A1	REV__nc|ENSG00000175003|O15245-2|SLC22A1	MSMS	HCT116MG_D190212_S1	1	591.8051147460938	2	591.805697	1181.59684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.431	1	31.431	30.931	31.931	0								0	0	0	0.93717	1	11564	11564		13.042	2.2185	1		+		36214	17220	23147	23268	34863	34863					0.01330575066322126
VGSVLPTSQPP	11	Unmodified	_VGSVLPTSQPP_					0	0	0			REV__ARPP21|p.L429P|1|0.67|ENSG00000172995|chr3:35729363-35729363|T/C|missense_variant	REV__ARPP21|p.L429P|1|0.67|ENSG00000172995|chr3:35729363-35729363|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	541.2966918945312	2	541.298039	1080.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.441	1	29.207	28.707	29.707	-0.23398								0	0	0	0.8787	1	10696	10696		22.736	0	1		+		36215	9988	23148	23269	34864	34864					0.04445708269122406
VGSVMKMEPLN	11	Unmodified	_VGSVMKMEPLN_					0	0	0		ENST00000472057.1_1_22:29727525-29736761:-|nuORF;ENST00000482818.1_1_22:29726183-29727937:-|nuORF;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	ENST00000472057.1_1_22:29727525-29736761:-|nuORF	ENST00000472057.1_1_22:29727525-29736761:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	603.1881103515625	2	602.806859	1203.59917	0.53162	0.00032046	0.74082	0.00044657	1.2724	0.00076704	602.8071361994954	21.556	0.42245	21.575	21.377	21.799	0.018446					16	7	3	0	0	0	0.36231	1	7579	7579		13.042	10.047	1	3253200			36216	1683	23149	23270	34865	34865					0.005509642081506172
VGSVPFRRPV	10	Unmodified	_VGSVPFRRPV_					0	0	0			REV__ENST00000290552.7_1_16:55358927-55360360:+|nuORF	REV__ENST00000290552.7_1_16:55358927-55360360:+|nuORF	MSMS	HCT116MG_D190212_S1	1	557.3297729492188	2	557.330008	1112.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.285	1	27.285	26.785	27.785	0								0	0	0	0.81484	1	9894	9894		26.884	8.7373	1		+		36217	14745	23150	23271	34866	34866					0.09364533216739801
VGSVPPAVGP	10	Unmodified	_VGSVPPAVGP_					0	0	0			REV__ENST00000495550.5_1_1:197704780-197743705:-|nuORF	REV__ENST00000495550.5_1_1:197704780-197743705:-|nuORF	MSMS	HCT116MG_D190212_S2	2	440.2506103515625	2	440.25036	878.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.686	1	24.306	23.806	24.806	-0.38003								0	0	0	0.75886	1	8857	8857		34.102	1.797	1		+		36218	15847	23151	23272	34867	34867					0.04206399868758126
VGSVTRLGKAG	11	Unmodified	_VGSVTRLGKAG_					0	0	0		ENST00000380087.6_1_X:16888168-16888453:-|nuORF	ENST00000380087.6_1_X:16888168-16888453:-|nuORF	ENST00000380087.6_1_X:16888168-16888453:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	522.8117065429688	2	522.811648	1043.60874	0.30643	0.00016021	0.029319	1.5328E-05	0.33575	0.00017554	522.811596510038	49.584	0.36153	49.584	49.389	49.75	0					10	6	3	0	0	0	0.73981	1	18915	18915		7.1017	0.89594	1	20140000			36219	7560	23152	23273	34868	34868					0.08868236600187629
VGSVVLILVR	10	Unmodified	_VGSVVLILVR_					0	0	0			REV__ENST00000563785.5_1_16:88722464-88729488:-|nuORF	REV__ENST00000563785.5_1_16:88722464-88729488:-|nuORF	MSMS	HCT116MG_D190212_S3	3	527.853759765625	2	527.852784	1053.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.379	1	12.441	11.941	12.941	0.06246								0	0	0	0.97045	1	3856	3856		0.45834	0	1		+		36220	16517	23153	23274	34869	34869					0.16631758679159248
VGSVVNKT	8	Unmodified	_VGSVVNKT_					0	0	0			REV__nc|ENSG00000110090|P50416-2|CPT1A	REV__nc|ENSG00000110090|P50416-2|CPT1A	MSMS	HCT116MG_D190212_S4	4	402.2332763671875	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.987	1	27.665	27.165	28.165	-0.32157								0	0	0	0.8837	1	10044	10044		5.7604	0	1		+		36221	11392	23154	23275	34870	34870					0.04573826834655392
VGSVVWICL	9	Unmodified	_VGSVVWICL_					0	0	0			REV__SLC30A8|p.T155S|1|0.25|ENSG00000164756|chr8:117157735-117157735|A/T|missense_variant	REV__SLC30A8|p.T155S|1|0.25|ENSG00000164756|chr8:117157735-117157735|A/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	488.270751953125	2	488.270238	974.525924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.374	1	26.073	25.573	26.573	-0.30087								0	0	0	0.76669	1	9392	9392		12.532	1.4171	1		+		36222	17526	23155	23276	34871	34871					0.03764203547814304
VGSVWFVLP	9	Unmodified	_VGSVWFVLP_					0	0	0		ENSG00000160218|ENST00000291574|TRAPPC10;TRAPPC10|p.P1021Lfs*23|1|0.56|ENSG00000160218|chr21:44094123-44094123|C/-|frameshift_variant	ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	MSMS	HCT116MG_D190212_S4	4	502.28521728515625	2	502.284203	1002.55385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.435	1	34.05	33.55	34.55	-0.38558								0	0	0	0.76781	1	12574	12574		8.5933	2.2392	1				36223	4437	23156	23277	34872	34872					0.052678497995543694
VGSWEVGGMVP	11	Unmodified	_VGSWEVGGMVP_					0	0	0		ENST00000361906.7_1_22:38616387-38616726:-|nuORF	ENST00000361906.7_1_22:38616387-38616726:-|nuORF	ENST00000361906.7_1_22:38616387-38616726:-|nuORF	MSMS	HCT116MG_D190212_S4	4	559.2728881835938	2	559.270967	1116.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.09	1	39.71	39.21	40.21	-0.37936								0	0	0	0.93374	1	14696	14696		14.838	0	1				36224	7367	23157	23278	34873	34873					-0.02622207154058742
VGTARAQVH	9	Unmodified	_VGTARAQVH_					0	0	0			REV__ENST00000576359.1_1_17:80615741-80616143:-|nuORF	REV__ENST00000576359.1_1_17:80615741-80616143:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	470.235595703125	2	469.761958	937.509363	0.14741	6.9248E-05	0.024368	1.1447E-05	0.17178	8.0696E-05	469.76184301990315	16.185	0.51986	16.271	15.977	16.497	0.085423					22	9	3	0	0	0	0.09628	1	5384	5384		54.774	4.8406	1	6136100	+		36225	16605	23158	23279	34874	34874					0.03810838706078812
VGTASLIPL	9	Unmodified	_VGTASLIPL_					0	0	0		MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant;MGA|p.D2578Rfs*45|1|0.32|ENSG00000174197|chr15:41762342-41762343|-/A|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MGA|p.S2228Kfs*5|1|0.33|ENSG00000174197|chr15:41750284-41750285|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	870.5313720703125	1	870.529495	869.522219	0.98441	0.00085696	0.74477	0.00064835	1.7292	0.0015053	870.5299780067239	59.914	2.7992	59.642	58.309	61.109	-0.27156					83	56	2	0	0	0	0.74607	1	23036	23036		2.0598	0	1	11418000			36226	5320	23159	23280	34875	34875					0.08223857045629757
VGTATPYTY	9	Unmodified	_VGTATPYTY_					0	0	0			REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	REV__ZFR2|p.G634Afs*20|1|0.07|ENSG00000105278|chr19:3819075-3819075|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	486.7367248535156	2	486.737283	971.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.331	1	30.047	29.547	30.547	-0.28453								0	0	0	0.50556	1	11147	11147		28.487	5.3384	1		+		36227	11244	23160	23281	34876	34876					-0.026859140933879644
VGTDAPDQHLE	11	Unmodified	_VGTDAPDQHLE_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-MSMS	HCT116MG_D190212_S4	4	591.2758178710938	2	591.275292	1180.53603	0.72696	0.00042983	0.16142	9.5441E-05	0.88837	0.00052527	591.275452535192	19.595	0.61413	19.401	19.122	19.736	-0.19368					17	11	2	0	0	0	0.70662	1	6668	6668		19.362	0.10495	1	2102200			36228	9666	23161	23282	34877	34877					-0.04701561983915781
VGTEIVTVYK	10	Unmodified	_VGTEIVTVYK_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MSMS	HCT116MG_D190212_S3	3	370.2130432128906	3	370.213135	1107.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.861	1	28.639	28.139	29.139	-0.22195								0	0	0	0.95648	1	10462	10462		1.5923	0.37745	1		+		36229	11099	23162	23283	34878	34878					0.06807165446002728
VGTELKIAE	9	Unmodified	_VGTELKIAE_					0	0	0			REV__DCX|p.K308Nfs*10|1|0.59|ENSG00000077279|chrX:111401014-111401014|T/-|frameshift_variant	REV__DCX|p.K308Nfs*10|1|0.59|ENSG00000077279|chrX:111401014-111401014|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	480.27349853515625	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.065	1	43.759	43.259	44.259	-0.30682								0	0	0	0.76669	1	16461	16461		12.532	3.1841	1		+		36230	10343	23163	23284	34879	34879					0.05258634349092972
VGTELVPQ	8	Unmodified	_VGTELVPQ_					0	0	0			REV__ENSG00000080298|ENST00000617270|RFX3	REV__ENSG00000080298|ENST00000617270|RFX3	MSMS	HCT116MG_D190212_S1	1	421.716796875	2	421.734543	841.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.855	1	19.855	19.355	20.355	0								0	0	0	0.8837	1	6908	6908		13.508	3.3245	1		+		36231	10859	23164	23285	34880	34880					0.02746407114818794
VGTESKVSVGI	11	Unmodified	_VGTESKVSVGI_					0	0	0		nc|ENSG00000101624|Q8TAP6-2|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF;ENSG00000101624|ENST00000262127|CEP76;ENST00000593250.5_1_18:12691430-12699161:-|nuORF;nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-2|CEP76	nc|ENSG00000101624|Q8TAP6-2|CEP76	MSMS	HCT116MG_D190212_S1	1	359.20501708984375	3	359.20464	1074.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.431	1	21.431	20.931	21.931	0								0	0	0	0.88801	1	7538	7538		12.856	0	1				36232	1801	23165	23286	34881	34881					0.05777690923582668
VGTGKPHR	8	Unmodified	_VGTGKPHR_					0	0	0			REV__ENST00000515669.5_1_5:102594747-102611616:+|nuORF	REV__ENST00000515669.5_1_5:102594747-102611616:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	851.48583984375	1	851.484611	850.477334	1.073	0.00091365	0.42536	0.00036219	1.4984	0.0012758	851.4849622423568	47.743	0.36189	47.61	47.428	47.79	-0.13281					10	6	2	0	0	0	0.79062	2	18224	18224;18277		12.532	6.7711	1	41267000	+		36233	16207	23166	23287	34882;34883	34882					0.0461147102294035
VGTGKPHR	8	Unmodified	_VGTGKPHR_					0	0	0			REV__ENST00000515669.5_1_5:102594747-102611616:+|nuORF	REV__ENST00000515669.5_1_5:102594747-102611616:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	851.484611	850.477334	0.76234	0.00064912	0.68564	0.00058381	1.448	0.0012329	851.4850859819044	47.295	0.43077	47.295	47.01	47.441	0	-0.15759	0.00019452	NaN	12.532	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124380000	+		36234	16207	23166	23287							0.0461147102294035
VGTGLFSK	8	Unmodified	_VGTGLFSK_					0	0	0			REV__ENST00000568628.5_1_19:11505318-11507979:-|nuORF	REV__ENST00000568628.5_1_19:11505318-11507979:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	808.4539184570312	1	808.45633	807.449054	0.767	0.00062008	-2.2149	-0.0017907	-1.4479	-0.0011706	808.454974381871	53.713	0.31004	53.524	53.377	53.687	-0.1894					6	5	2	0	0	0	0.84507	1	20695	20695		6.2058	1.4498	1	7118700	+		36235	16558	23167	23288	34884	34884					0.037627283229994646
VGTGLFSK	8	Unmodified	_VGTGLFSK_					0	0	0			REV__ENST00000568628.5_1_19:11505318-11507979:-|nuORF	REV__ENST00000568628.5_1_19:11505318-11507979:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	808.45633	807.449054	0.767	0.00062008	-2.2149	-0.0017907	-1.4479	-0.0011706	808.454974381871	53.713	0.31004	53.524	53.377	53.687	-0.1894	0	0	NaN	6.2058	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7118700	+		36236	16558	23167	23288							0.037627283229994646
VGTGPSTS	8	Unmodified	_VGTGPSTS_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MSMS	HCT116MG_D190212_S1	1	353.1734313964844	2	353.174318	704.334084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.731	1	18.731	18.231	19.231	0								0	0	0	0.8837	1	6456	6456		2.5775	0	1		+		36237	12047	23168	23289	34885	34885					-0.029910008787965126
VGTGSASY	8	Unmodified	_VGTGSASY_					0	0	0		nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	nc|ENSG00000182557|Q6ZMD2-2|SPNS3	MSMS	HCT116MG_D190212_S2	2	371.11895751953125	2	371.174318	740.334084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.476	1	10.202	9.7024	10.702	-0.27365								0	0	0	0.8837	1	3316	3316		0.79363	0	1				36238	5674	23169	23290	34886	34886					-0.04647000878810559
VGTHVRWHRFL	11	Unmodified	_VGTHVRWHRFL_					0	0	0			REV__ENSG00000183647|ENST00000597700|ZNF530	REV__ENSG00000183647|ENST00000597700|ZNF530	MSMS	HCT116MG_D190212_S1	1	703.927978515625	2	704.391462	1406.76837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.739	1	17.739	17.239	18.239	0								0	0	0	0.95581	1	6056	6056		3.2813	0.54611	1		+		36239	13771	23170	23291	34887	34887					0.08125789668019934
VGTIQGAGP	9	Unmodified	_VGTIQGAGP_					0	0	0		ENSG00000154144|ENST00000441174|TBRG1;ENST00000473629.6_1_11:124492979-124496722:+|nuORF;ENST00000452080.5_1_11:124492979-124496602:+|nuORF;TBRG1|p.E142Rfs*53|1|0.3|ENSG00000154144|chr11:124625866-124625867|-/A|frameshift_variant;TBRG1|p.E197Rfs*29|1|0.13|ENSG00000154144|chr11:124626603-124626603|G/-|frameshift_variant	ENSG00000154144|ENST00000441174|TBRG1	ENSG00000154144|ENST00000441174|TBRG1	MSMS	HCT116MG_D190212_S4	4	400.2178039550781	2	400.21906	798.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.988	1	28.648	28.148	29.148	-0.34059								0	0	0	0.76877	1	10449	10449		5.2307	0.47466	1				36240	4210	23171	23292	34888	34888					0.016292538005700408
VGTIWFIFTYI	11	Unmodified	_VGTIWFIFTYI_					0	0	0			REV__ENSG00000000003|ENST00000373020|TSPAN6	REV__ENSG00000000003|ENST00000373020|TSPAN6	MSMS	HCT116MG_D190212_S3	3	680.2683715820312	2	680.371007	1358.72746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.307	1	45.995	45.495	46.495	-0.31237								0	0	0	0.95581	1	17359	17359		3.2813	0.78282	1		+		36241	10460	23172	23293	34889	34889					0.06244590785195214
VGTKGKPI	8	Unmodified	_VGTKGKPI_					0	0	0			REV__ENSG00000233050|ENST00000437818|DEFB130B	REV__ENSG00000233050|ENST00000437818|DEFB130B	MSMS	HCT116MG_D190212_S4	4	400.2539978027344	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.366	1	31.987	31.487	32.487	-0.37924								0	0	0	0.8837	1	11785	11785		0.79363	0	1		+		36242	14325	23173	23294	34890	34890					0.08903007593983148
VGTLGPPL	8	Unmodified	_VGTLGPPL_					0	0	0		ENST00000162391.7_1_12:8185724-8186174:+|nuORF	ENST00000162391.7_1_12:8185724-8186174:+|nuORF	ENST00000162391.7_1_12:8185724-8186174:+|nuORF	MSMS	HCT116MG_D190212_S4	4	377.2281494140625	2	377.228897	752.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.379	1	33.993	33.493	34.493	-0.38558								0	0	0	0.8837	1	12551	12551		2.8892	0	1				36243	6713	23174	23295	34891	34891					0.057116298113214725
VGTLKKRLDK	10	Unmodified	_VGTLKKRLDK_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MSMS	HCT116MG_D190212_S1	1	579.3742065429688	2	579.371872	1156.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.518	1	62.518	62.018	63.018	0								0	0	0	0.96377	1	24142	24142		1.6526	1.0511	1				36244	6089	23175	23296	34892	34892					0.15709644593766825
VGTLLKEQHCY	11	Unmodified	_VGTLLKEQHCY_					0	0	0		FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	FRAS1|p.P3289Lfs*45|1|0.05|ENSG00000138759|chr4:78511358-78511359|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	430.88800048828125	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4952	1	7.2794	6.7794	7.7794	-0.21581								0	0	0	0.9619	1	2351	2351		0.094841	0	1				36245	9166	23176	23297	34893	34893					0.010571113458354375
VGTLNRPR	8	Unmodified	_VGTLNRPR_					0	0	0		nc|ENSG00000065361|P21860-5|ERBB3;ERBB3|p.R1080Vfs*22|1|0.14|ENSG00000065361|chr12:56101093-56101093|C/-|frameshift_variant;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	MULTI-MSMS	HCT116MG_D190212_S1	1	456.77239990234375	2	456.772326	911.530098	0.198	9.0441E-05	-0.09024	-4.1219E-05	0.10776	4.9222E-05	456.7721388636837	46.564	0.56947	46.564	46.337	46.907	0					19	10	3	0	0	0	0.8506	1	17663	17663		5.2307	0.47466	1	58141000			36246	1157	23177	23298	34894	34894					0.07079429085740685
VGTLPPLL	8	Unmodified	_VGTLPPLL_					0	0	0			REV__ENST00000261811.5_1_5:139623020-139623080:+|nuORF	REV__ENST00000261811.5_1_5:139623020-139623080:+|nuORF	MSMS	HCT116MG_D190212_S1	1	405.2593994140625	2	405.260197	808.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.975	1	37.975	37.475	38.475	0								0	0	0	0.8837	1	14204	14204		2.8892	0	1		+		36247	14630	23178	23299	34895	34895					0.09392775879518922
VGTLPPLL	8	Unmodified	_VGTLPPLL_					0	0	0			REV__ENST00000261811.5_1_5:139623020-139623080:+|nuORF	REV__ENST00000261811.5_1_5:139623020-139623080:+|nuORF	MSMS	HCT116MG_D190212_S2	2	405.25921630859375	2	405.260197	808.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.045	1	24.67	24.17	25.17	-0.37521								0	0	0	0.8837	1	9002	9002		6.3541	0	1		+		36248	14630	23178	23299	34896	34896					0.09392775879518922
VGTLPPLP	8	Unmodified	_VGTLPPLP_					0	0	0			REV__ENST00000449049.7_1_12:57624143-57624407:+|nuORF	REV__ENST00000449049.7_1_12:57624143-57624407:+|nuORF	MSMS	HCT116MG_D190212_S1	1	397.2433166503906	2	397.244547	792.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.997	1	43.997	43.497	44.497	0								0	0	0	0.8837	1	16638	16638		2.8892	0	1		+		36249	15698	23179	23300	34897	34897					0.07000202845415515
VGTLTYVWWY	10	Unmodified	_VGTLTYVWWY_					0	0	0		ENST00000486192.1_1_10:108380089-108389119:-|nuORF;nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	ENST00000486192.1_1_10:108380089-108389119:-|nuORF	ENST00000486192.1_1_10:108380089-108389119:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	643.8243408203125	2	644.324057	1286.63356	0.53314	0.00034351	1.5822	0.0010194	2.1153	0.0013629	644.3256067486685	20.271	0.41724	19.891	19.605	20.023	-0.37949					12	7	3	0	0	0	0.29442	1	7081	7081		20.454	16.857	1	47412000			36250	2142	23180	23301	34898	34898					0.0017087168291709531
VGTLVLAL	8	Unmodified	_VGTLVLAL_					0	0	0			REV__QRFPR|p.R43C|1|0.32|ENSG00000186867|chr4:121380521-121380521|G/A|missense_variant	REV__QRFPR|p.R43C|1|0.32|ENSG00000186867|chr4:121380521-121380521|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	393.2590637207031	2	393.260197	784.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.903	1	30.903	30.403	31.403	0								0	0	0	0.8837	1	11351	11351		2.8892	0	1		+		36251	13901	23181	23302	34899	34899					0.1049677587949418
VGTLVRVVY	9	Unmodified	_VGTLVRVVY_					0	0	0			REV__nc|ENSG00000173200|Q460N3-2|PARP15	REV__nc|ENSG00000173200|Q460N3-2|PARP15	MSMS	HCT116MG_D190212_S4	4	503.3063049316406	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.35	1	54.027	53.527	54.527	-0.32349								0	0	0	0.7689	1	20319	20319		4.756	0	1		+		36252	13422	23182	23303	34900	34900					0.09974923719607887
VGTLVRVVY	9	Unmodified	_VGTLVRVVY_					0	0	0			REV__nc|ENSG00000173200|Q460N3-2|PARP15	REV__nc|ENSG00000173200|Q460N3-2|PARP15	MSMS	HCT116MG_D190212_S4	4	503.30615234375	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.528	1	54.204	53.704	54.704	-0.32349								0	0	0	0.768	1	20391	20391		7.9102	0.62092	1		+		36253	13422	23182	23303	34901	34901					0.09974923719607887
VGTLVRVVY	9	Unmodified	_VGTLVRVVY_					0	0	0			REV__nc|ENSG00000173200|Q460N3-2|PARP15	REV__nc|ENSG00000173200|Q460N3-2|PARP15	MSMS	HCT116MG_D190212_S4	4	503.305908203125	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.111	1	54.793	54.293	55.293	-0.31774								0	0	0	0.76967	1	20626	20626		2.0598	0	1		+		36254	13422	23182	23303	34902	34902					0.09974923719607887
VGTNYGRGLAP	11	Unmodified	_VGTNYGRGLAP_					0	0	0			REV__LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	REV__LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	553.73828125	2	552.793455	1103.57236	0.44728	0.00024725	-0.17101	-9.4532E-05	0.27627	0.00015272	552.7932438851351	16.434	0.41642	16.434	16.109	16.525	0					12	7	2	0	0	0	0.73696	1	5450	5450		8.1555	0	1	1830800	+		36255	12031	23183	23304	34903	34903					0.024713597034633494
VGTNYGRGLAP	11	Unmodified	_VGTNYGRGLAP_					0	0	0			REV__LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	REV__LARGE|p.K385Qfs*24|1|0.26|ENSG00000133424|chr22:33337780-33337781|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	552.7935180664062	2	552.793455	1103.57236	0.42014	0.00023225	-0.28632	-0.00015827	0.13382	7.3975E-05	552.7931228209355	34.803	0.35757	34.417	34.236	34.594	-0.38606					8	6	2	0	0	0	0.62391	1	12738	12738		32.786	1.5173	1	2898100	+		36256	12031	23183	23304	34904	34904					0.024713597034633494
VGTQPRPLEE	10	Unmodified	_VGTQPRPLEE_					0	0	0		CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant;CMYA5|p.I3735Hfs*2|1|0.08|ENSG00000164309|chr5:79758842-79758843|-/T|frameshift_variant;CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant;ENSG00000164309|ENST00000446378|CMYA5	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	CMYA5|p.S3683Pfs*17|1|0.14|ENSG00000164309|chr5:79752728-79752728|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	563.299072265625	2	563.29857	1124.58259	-0.08188	-4.6123E-05	0.50027	0.0002818	0.41839	0.00023568	563.2987493743595	17.355	0.25862	17.185	17.018	17.277	-0.17046					6	4	2	0	0	0	0.77151	1	5773	5773		14.405	2.2306	1	1047500			36257	488	23184	23305	34905	34905					0.025279226380462205
VGTSAGHVAP	10	Unmodified	_VGTSAGHVAP_					0	0	0			REV__ENST00000430297.6_2_2:220047988-220048186:+|nuORF	REV__ENST00000430297.6_2_2:220047988-220048186:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	448.2350769042969	2	448.235242	894.45593	-0.07441	-3.3353E-05	0.056175	2.518E-05	-0.018235	-8.1736E-06	448.2351804161858	18.918	0.26118	18.549	18.471	18.732	-0.3695					5	4	2	0	0	0	0.26542	1	6564	6564		26.884	11.036	1	5861900	+		36258	15577	23185	23306	34906	34906					0.004480412035604786
VGTSRKKR	8	Unmodified	_VGTSRKKR_					0	0	0			REV__BMP3|p.E284V|1|0.37|ENSG00000152785|chr4:81046272-81046272|A/T|missense_variant	REV__BMP3|p.E284V|1|0.37|ENSG00000152785|chr4:81046272-81046272|A/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	466.2938232421875	2	466.293425	930.572297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.107	1	47.738	47.238	48.238	-0.36907								0	0	0	0.8837	1	17806	17806		0.79363	0	1		+		36259	10044	23186	23307	34907	34907					0.10423404494133592
VGTSVWIY	8	Unmodified	_VGTSVWIY_					0	0	0			REV__ENST00000447061.2_1_2:38512560-38513046:+|nuORF	REV__ENST00000447061.2_1_2:38512560-38513046:+|nuORF	MSMS	HCT116MG_D190212_S2	2	462.7432556152344	2	462.744911	923.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.521	1	28.191	27.691	28.691	-0.32987								0	0	0	0.8837	1	10407	10407		14.582	1.0738	1		+		36260	15680	23187	23308	34908	34908					0.010469974944726346
VGTTKNAL	8	Unmodified	_VGTTKNAL_					0	0	0		ENST00000462626.1_1_11:62373317-62373458:-|nuORF;ENST00000460939.5_1_11:62371528-62373633:-|nuORF;ENSG00000149499|ENST00000394773|EML3;nc|ENSG00000149499|Q32P44-2|EML3	ENST00000462626.1_1_11:62373317-62373458:-|nuORF	ENST00000462626.1_1_11:62373317-62373458:-|nuORF	MSMS	HCT116MG_D190212_S3	3	402.2331848144531	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.545	1	33.254	32.754	33.754	-0.29013								0	0	0	0.8837	1	12315	12315		2.8892	0	1				36261	4065	23188	23309	34909	34909					0.04573826834655392
VGTVAEAV	8	Unmodified	_VGTVAEAV_					0	0	0		nc|ENSG00000189099|Q7RTY5-3|PRSS48;ENSG00000189099|ENST00000455694|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	MULTI-MSMS	HCT116MG_D190212_S2	2	373.2080078125	2	373.208161	744.401769	0.041765	1.5587E-05	-0.33261	-0.00012413	-0.29084	-0.00010854	373.2080460695416	24.079	0.25877	23.696	23.56	23.819	-0.38281					7	4	2	0	0	0	0.77285	1	8635	8635		14.582	0	1	9598100			36262	6019	23189	23310	34910	34910					0.019344490519983992
VGTVAGSY	8	Unmodified	_VGTVAGSY_					0	0	0			REV__nc|ENSG00000178971|Q2NKJ3-2|CTC1	REV__nc|ENSG00000178971|Q2NKJ3-2|CTC1	MSMS	HCT116MG_D190212_S1	1	377.1910400390625	2	377.192511	752.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.176	1	30.176	29.676	30.676	0								0	0	0	0.8837	1	11057	11057		2.8892	0.31174	1		+		36263	13619	23190	23311	34911	34911					-0.01562123982103003
VGTVDEGL	8	Unmodified	_VGTVDEGL_					0	0	0			REV__tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1	REV__tr|U7SMK9|U7SMK9_FUSNUProbablecytosolaminopeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pepAPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	395.20379638671875	2	395.203076	788.391599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.823	1	14.823	14.323	15.323	0								0	0	0	0.8837	1	4881	4881		2.8892	0	1		+		36264	17727	23191	23312	34912	34912					-0.011061586732239448
VGTVGVPL	8	Unmodified	_VGTVGVPL_					0	0	0		ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENST00000457270.5_1_22:22311488-22312070:-|nuORF	MSMS	HCT116MG_D190212_S3	3	371.2273254394531	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.396	1	38.095	37.595	38.595	-0.30137								0	0	0	0.8837	1	14222	14222		5.7604	0	1				36265	8030	23192	23313	34913	34913					0.06263629811314786
VGTVLICLLY	10	Unmodified	_VGTVLICLLY_					0	0	0			REV__tr|U7SL05|U7SL05_FUSNUHXXEEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02020PE=4SV=1	REV__tr|U7SL05|U7SL05_FUSNUHXXEEdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02020PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	547.3204956054688	2	547.319928	1092.6253	0.37494	0.00020521	0.34187	0.00018711	0.71681	0.00039233	547.3199453204089	49.305	0.80954	48.94	48.457	49.266	-0.365					23	16	2	0	0	0	0.81435	1	18173	18173		10.824	0.75	1	5605000	+		36266	17704	23193	23314	34914	34914					0.08269601441929808
VGTYISPDLY	10	Unmodified	_VGTYISPDLY_					0	0	0			REV__WWOX|p.R89Sfs*10|1|0.08|ENSG00000186153|chr16:78115011-78115012|-/CATTTAT|frameshift_variant	REV__WWOX|p.R89Sfs*10|1|0.08|ENSG00000186153|chr16:78115011-78115012|-/CATTTAT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	564.7459106445312	2	564.284597	1126.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.489	1	29.14	28.64	29.64	-0.34921								0	0	0	0.93854	1	10651	10651		7.2892	0	1		+		36267	18058	23194	23315	34915	34915					-0.0035740034202262905
VGTYNEIAEK	10	Unmodified	_VGTYNEIAEK_					0	0	0			REV__tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	REV__tr|U7STY1|U7STY1_FUSNUCobyrinatea,c-diamidesynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cbiAPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	375.1920471191406	3	375.192511	1122.5557	-0.22393	-8.4015E-05	-0.29556	-0.00011089	-0.51949	-0.00019491	375.19229677409106	20.862	0.26017	20.897	20.714	20.975	0.034473					6	4	2	0	0	0	0.71224	1	7263	7263		12.856	3.0917	1	4325100	+		36268	17813	23195	23316	34916	34916					-0.0006718597314829822
VGVAEKSTKKL	11	Unmodified	_VGVAEKSTKKL_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A;REV__ENSG00000272333|ENST00000420124|KMT2B	REV__ENSG00000272333|ENST00000420124|KMT2B	MSMS	HCT116MG_D190212_S3	3	580.3543090820312	2	580.355888	1158.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.565	1	36.264	35.764	36.764	-0.30113								0	0	0	0.95521	1	13515	13515		3.5965	0	1		+		36269	14442;11628	23196	23317	34917	34917					0.12422232119979526
VGVAIQEK	8	Unmodified	_VGVAIQEK_					0	0	0		ENST00000489022.5_1_7:134133851-134143844:-|nuORF;ENST00000484592.5_1_7:134134339-134143844:-|nuORF;ENST00000498771.5_1_7:134132683-134136556:-|nuORF;ENSG00000085662|ENST00000285930|AKR1B1	ENST00000489022.5_1_7:134133851-134143844:-|nuORF	ENST00000489022.5_1_7:134133851-134143844:-|nuORF	MSMS	HCT116MG_D190212_S2	2	422.24896240234375	2	422.25036	842.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.993	1	44.901	44.401	45.401	-0.092472								0	0	0	0.8837	1	17100	17100		2.8892	0	1				36270	1457	23197	23318	34918	34918					0.05862399868749435
VGVAIQEK	8	Unmodified	_VGVAIQEK_					0	0	0		ENST00000489022.5_1_7:134133851-134143844:-|nuORF;ENST00000484592.5_1_7:134134339-134143844:-|nuORF;ENST00000498771.5_1_7:134132683-134136556:-|nuORF;ENSG00000085662|ENST00000285930|AKR1B1	ENST00000489022.5_1_7:134133851-134143844:-|nuORF	ENST00000489022.5_1_7:134133851-134143844:-|nuORF	MSMS	HCT116MG_D190212_S4	4	422.2487487792969	2	422.25036	842.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.94	1	45.568	45.068	46.068	-0.37206								0	0	0	0.8837	1	16965	16965		2.3027	0	1				36271	1457	23197	23318	34919	34919					0.05862399868749435
VGVAIREKLRE	11	Unmodified	_VGVAIREKLRE_					0	0	0		ENST00000429105.1_1_1:224762276-224762375:+|nuORF	ENST00000429105.1_1_1:224762276-224762375:+|nuORF	ENST00000429105.1_1_1:224762276-224762375:+|nuORF	MSMS	HCT116MG_D190212_S3	3	635.3851928710938	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.657	1	50.343	49.843	50.843	-0.31381								0	0	0	0.95521	1	19108	19108		3.5965	0	1				36272	7834	23198	23319	34920	34920					0.13284128134182538
VGVAKDLI	8	Unmodified	_VGVAKDLI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000562722.1_1_16:70597761-70599451:+|nuORF;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MSMS	HCT116MG_D190212_S4	4	407.7541198730469	2	407.755278	813.496004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.434	1	45.061	44.561	45.561	-0.37266								0	0	0	0.8837	1	16760	16760		0.79363	0	1				36273	6018	23199	23320	34921	34921					0.08179587874133176
VGVALQLK	8	Unmodified	_VGVALQLK_					0	0	0			REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	MSMS	HCT116MG_D190212_S1	1	414.2699890136719	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.591	1	49.591	49.091	50.091	0								0	0	0	0.8837	1	18900	18900		0.79363	0	1		+		36274	14559	23200	23321	34922	34922					0.10743580628070504
VGVALQLK	8	Unmodified	_VGVALQLK_					0	0	0			REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	MSMS	HCT116MG_D190212_S3	3	413.8602294921875	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.605	1	12.668	12.168	13.168	0.06246								0	0	0	0.8837	1	3944	3944		0.79363	0	1		+		36275	14559	23200	23321	34923	34923					0.10743580628070504
VGVALQLK	8	Unmodified	_VGVALQLK_					0	0	0			REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	MSMS	HCT116MG_D190212_S3	3	414.0602722167969	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.207	1	13.276	12.776	13.776	0.069158								0	0	0	0.8837	1	4174	4174		0.79363	0	1		+		36276	14559	23200	23321	34924	34924					0.10743580628070504
VGVALQLK	8	Unmodified	_VGVALQLK_					0	0	0			REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	MSMS	HCT116MG_D190212_S3	3	413.93475341796875	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.266	1	13.335	12.835	13.835	0.069158								0	0	0	0.8837	1	4196	4196		0.79363	0	1		+		36277	14559	23200	23321	34925	34925					0.10743580628070504
VGVALQLK	8	Unmodified	_VGVALQLK_					0	0	0			REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	REV__ENST00000238508.7_1_18:61602315-61602360:+|nuORF	MSMS	HCT116MG_D190212_S4	4	414.1460266113281	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.516	1	13.354	12.854	13.854	-0.16233								0	0	0	0.8837	1	4242	4242		0.79363	0	1		+		36278	14559	23200	23321	34926	34926					0.10743580628070504
VGVAMALI	8	Unmodified	_VGVAMALI_					0	0	0		SYNDIG1|p.V246M|1|0.07|ENSG00000101463|chr20:24665463-24665463|G/A|missense_variant	SYNDIG1|p.V246M|1|0.07|ENSG00000101463|chr20:24665463-24665463|G/A|missense_variant	SYNDIG1|p.V246M|1|0.07|ENSG00000101463|chr20:24665463-24665463|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	387.2337646484375	2	387.233125	772.451696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.941	1	29.941	29.441	30.441	0								0	0	0	0.8837	1	10962	10962		6.3541	0	1				36279	18248	23201	23322	34927	34927					0.05636860456297654
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	HCT116MG_D190212_S1	1	421.75103759765625	2	421.751393	841.488233	-0.10334	-4.3584E-05	0.053472	2.2552E-05	-0.049869	-2.1032E-05	421.751338342516	49	0.61909	49	48.46	49.079	0					17	11	2	0	0	0	0.86564	1	18617	18617		2.5775	0	1	52669000	+		36280	14475	23202	23323	34928	34928					0.061148733972345326
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	HCT116MG_D190212_S4	4	421.75146484375	2	421.751393	841.488233	0.17521	7.3893E-05	0.029161	1.2299E-05	0.20437	8.6192E-05	421.7512789793676	42.231	1.4201	41.855	41.215	42.636	-0.37565					60	38	2	0	0	0	0.87576	1	15520	15520		0.79363	0	1	7910700	+		36281	14475	23202	23323	34929	34929					0.061148733972345326
VGVARHSL	8	Unmodified	_VGVARHSL_					0	0	0		ENST00000566709.5_1_16:1859286-1859755:-|nuORF	ENST00000566709.5_1_16:1859286-1859755:-|nuORF	ENST00000566709.5_1_16:1859286-1859755:-|nuORF	MSMS	HCT116MG_D190212_S1	1	419.7488708496094	2	419.748319	837.482085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.682	1	31.682	31.182	32.182	0								0	0	0	0.8837	1	11665	11665		13.508	4.1604	1				36282	8866	23203	23324	34930	34930					0.05684355165692523
VGVARQTGR	9	Unmodified	_VGVARQTGR_					0	0	0			REV__PUSL1|p.E212Rfs*26|1|0.16|ENSG00000169972|chr1:1309836-1309836|C/-|frameshift_variant	REV__PUSL1|p.E212Rfs*26|1|0.16|ENSG00000169972|chr1:1309836-1309836|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	472.2750549316406	2	472.275232	942.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.589	1	50.234	49.734	50.734	-0.35517								0	0	0	0.7696	1	18801	18801		2.3027	0	1		+		36283	13271	23204	23325	34931	34931					0.06234527597428041
VGVARRPD	8	Unmodified	_VGVARRPD_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MSMS	HCT116MG_D190212_S4	4	435.2510986328125	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.222	1	41.846	41.346	42.346	-0.37565								0	0	0	0.8837	1	15510	15510		2.8892	0.58649	1		+		36284	11328	23205	23326	34932	34932					0.048394536773685104
VGVASGHL	8	Unmodified	_VGVASGHL_					0	0	0		ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	MSMS	HCT116MG_D190212_S3	3	370.2071228027344	2	370.208495	738.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.211	1	29.961	29.461	30.461	-0.24946								0	0	0	0.8837	1	11002	11002		2.8892	0	1				36285	2641	23206	23327	34933	34933					0.022772884917003466
VGVASGHL	8	Unmodified	_VGVASGHL_					0	0	0		ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	MSMS	HCT116MG_D190212_S4	4	370.20684814453125	2	370.208495	738.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.2	1	29.843	29.343	30.343	-0.3571								0	0	0	0.8837	1	10938	10938		2.8892	0	1				36286	2641	23206	23327	34934	34934					0.022772884917003466
VGVDRRPA	8	Unmodified	_VGVDRRPA_					0	0	0			REV__nc|ENSG00000214279|Q4G0T1-2|SCART1	REV__nc|ENSG00000214279|Q4G0T1-2|SCART1	MSMS	HCT116MG_D190212_S3	3	435.251220703125	2	435.251226	868.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.938	1	42.633	42.133	43.133	-0.30472								0	0	0	0.8837	1	16011	16011		0.79363	0	1		+		36287	14265	23207	23328	34935	34935					0.048394536773685104
VGVEKLAST	9	Unmodified	_VGVEKLAST_					0	0	0			REV__nc|ENSG00000137601|Q96PY6-4|NEK1	REV__nc|ENSG00000137601|Q96PY6-4|NEK1	MSMS	HCT116MG_D190212_S2	2	452.26019287109375	2	452.260925	902.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.096	1	9.8312	9.3312	10.331	-0.26472								0	0	0	0.7689	1	3178	3178		4.756	0	1		+		36288	12182	23208	23329	34936	34936					0.052143651776077604
VGVGHLIT	8	Unmodified	_VGVGHLIT_					0	0	0		FKBP10|p.R97H|1|0.11|ENSG00000141756|chr17:41817102-41817102|G/A|missense_variant	FKBP10|p.R97H|1|0.11|ENSG00000141756|chr17:41817102-41817102|G/A|missense_variant	FKBP10|p.R97H|1|0.11|ENSG00000141756|chr17:41817102-41817102|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	398.2386474609375	2	398.239796	794.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.663	1	51.351	50.851	51.851	-0.31166								0	0	0	0.8837	1	19512	19512		0.79363	0	1				36289	9158	23209	23330	34937	34937					0.059584345598864275
VGVGKRNR	8	Unmodified	_VGVGKRNR_					0	0	0			REV__MARCKSL1|p.E111Gfs*87|1|0.17|ENSG00000175130|chr1:32334853-32334853|T/-|frameshift_variant	REV__MARCKSL1|p.E111Gfs*87|1|0.17|ENSG00000175130|chr1:32334853-32334853|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	443.27313232421875	2	443.272493	884.530432	-0.0057335	-2.5415E-06	0.30857	0.00013678	0.30284	0.00013424	443.2725257711751	49.209	0.98026	49.209	48.408	49.389	0					34	18	4	0	0	0	0.86564	1	18569	18569		2.5775	0	1	93371000	+		36290	17006	23210	23331	34938	34938					0.08354848805595338
VGVGLVSPQ	9	Unmodified	_VGVGLVSPQ_					0	0	0		ENST00000571689.1_1_17:5138375-5138423:+|nuORF	ENST00000571689.1_1_17:5138375-5138423:+|nuORF	ENST00000571689.1_1_17:5138375-5138423:+|nuORF	MSMS	HCT116MG_D190212_S1	1	428.2489013671875	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.934	1	30.934	30.434	31.434	0								0	0	0	0.76923	1	11364	11364		3.5965	1.5367	1				36291	8896	23211	23332	34939	34939					0.053103998687561216
VGVGPQGA	8	Unmodified	_VGVGPQGA_					0	0	0		ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	684.367919921875	1	684.367515	683.360239	0.95381	0.00065276	-0.39991	-0.00027368	0.5539	0.00037907	684.3670818819733	24.607	0.52049	24.524	24.341	24.861	-0.083694					14	9	2	0	0	0	0.19622	1	8770	8770		74.396	0	1	3396200			36292	7010	23212	23333	34940	34940					0.005893130833214855
VGVGSLVRSPP	11	Unmodified	_VGVGSLVRSPP_					0	0	0			REV__ENST00000361483.4_1_12:111798605-111799217:-|nuORF	REV__ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MSMS	HCT116MG_D190212_S3	3	534.2579956054688	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.845	1	41.542	41.042	42.042	-0.30257								0	0	0	0.95023	1	15570	15570		6.2058	0	1		+		36293	15092	23213	23334	34941	34941					0.08285120742925756
VGVKAEDPHP	10	Unmodified	_VGVKAEDPHP_					0	0	0		nc|ENSG00000120341|Q96JE7-3|SEC16B;ENST00000327037.8_1_1:177899723-177917737:-|nuORF	nc|ENSG00000120341|Q96JE7-3|SEC16B	nc|ENSG00000120341|Q96JE7-3|SEC16B	MSMS	HCT116MG_D190212_S3	3	350.1860656738281	3	350.185579	1047.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.377	1	27.208	26.708	27.708	-0.16933								0	0	0	0.95179	1	9863	9863		2.086	0.24177	1				36294	7138	23214	23335	34942	34942					0.013042684378433478
VGVLALAL	8	Unmodified	_VGVLALAL_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-2|PNPLA7	MSMS	HCT116MG_D190212_S1	1	378.2057189941406	2	378.254914	754.495276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.138	1	27.138	26.638	27.638	0								0	0	0	0.8837	1	9835	9835		6.3541	0	1		+		36295	11933	23215	23336	34943	34943					0.1082079322508207
VGVLLLYWET	10	Unmodified	_VGVLLLYWET_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	MSMS	HCT116MG_D190212_S1	1	596.836181640625	2	596.834257	1191.65396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.309	1	51.309	50.809	51.809	0								0	0	0	0.93576	1	19600	19600		7.9102	1.187	1				36296	2960	23216	23337	34944	34944					0.0658004234269356
VGVLVTPL	8	Unmodified	_VGVLVTPL_					0	0	0			REV__ENSG00000083444|ENST00000196061|PLOD1	REV__ENSG00000083444|ENST00000196061|PLOD1	MSMS	HCT116MG_D190212_S4	4	399.2586975097656	2	399.260197	796.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.317	1	42.943	42.443	43.443	-0.37433								0	0	0	0.8837	1	15921	15921		2.8892	0	1		+		36297	10902	23217	23338	34945	34945					0.09944775879523604
VGVLVWWIPI	10	Unmodified	_VGVLVWWIPI_					0	0	0			REV__nc|ENSG00000005961|P08514-2|ITGA2B	REV__nc|ENSG00000005961|P08514-2|ITGA2B	MSMS	HCT116MG_D190212_S2	2	591.3580932617188	2	591.357702	1180.70085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.238	1	62.102	61.602	62.602	-0.13585								0	0	0	0.96911	1	24120	24120		0.45834	0	1		+		36298	10482	23218	23339	34946	34946					0.11772946684504859
VGVLVWWIPI	10	Unmodified	_VGVLVWWIPI_					0	0	0			REV__nc|ENSG00000005961|P08514-2|ITGA2B	REV__nc|ENSG00000005961|P08514-2|ITGA2B	MSMS	HCT116MG_D190212_S3	3	591.3594360351562	2	591.357702	1180.70085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.159	1	61.928	61.428	62.428	-0.23129								0	0	0	0.96911	1	23740	23740		0.45834	0	1		+		36299	10482	23218	23339	34947	34947					0.11772946684504859
VGVNIKGL	8	Unmodified	_VGVNIKGL_					0	0	0		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MSMS	HCT116MG_D190212_S1	1	400.2539367675781	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.114	1	32.114	31.614	32.614	0								0	0	0	0.8837	1	11839	11839		0.79363	0	1				36300	787	23219	23340	34948	34948					0.08903007593983148
VGVPGALP	8	Unmodified	_VGVPGALP_					0	0	0		ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	355.06982421875	2	355.215789	708.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.801	1	10.528	10.028	11.028	-0.27365								0	0	0	0.8837	1	3441	3441		0.79363	0	1				36301	18734	23220	23341	34949	34949					0.051153606398429474
VGVPGALP	8	Unmodified	_VGVPGALP_					0	0	0		ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	ZNF598|p.P646Afs*20|1|0.5|ENSG00000167962|chr16:1999075-1999076|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	355.0697937011719	2	355.215789	708.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.327	1	11.045	10.545	11.545	-0.28186								0	0	0	0.8837	1	3643	3643		0.79363	0	1				36302	18734	23220	23341	34950	34950					0.051153606398429474
VGVPLLLPELL	11	Unmodified	_VGVPLLLPELL_					0	0	0		ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.2542724609375	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.192	1	40.89	40.39	41.39	-0.30185								0	0	0	0.9619	1	15316	15316		0.094841	0	1				36303	7902	23221	23342	34951	34951					0.16289778790564924
VGVPLLLPELL	11	Unmodified	_VGVPLLLPELL_					0	0	0		ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S3	3	388.25390625	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.637	1	52.331	51.831	52.831	-0.30639								0	0	0	0.9619	1	19903	19903		0.094841	0	1				36304	7902	23221	23342	34952	34952					0.16289778790564924
VGVPLLLPELL	11	Unmodified	_VGVPLLLPELL_					0	0	0		ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MSMS	HCT116MG_D190212_S4	4	388.2541809082031	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.012	1	60.752	60.252	61.252	-0.2602								0	0	0	0.9619	1	23005	23005		0.094841	0	1				36305	7902	23221	23342	34953	34953					0.16289778790564924
VGVPVKVS	8	Unmodified	_VGVPVKVS_					0	0	0			REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	784.4909057617188	1	784.492716	783.485439	0.62765	0.00049239	-2.925	-0.0022946	-2.2973	-0.0018022	784.490515395932	50.767	0.31001	50.767	50.574	50.884	0					10	5	2	0	0	0	0.8506	1	19379	19379		5.2307	0	1	19305000	+		36306	13306	23222	23343	34954	34954					0.08503605219709698
VGVPVKVS	8	Unmodified	_VGVPVKVS_					0	0	0			REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	784.492716	783.485439	0.62765	0.00049239	-2.925	-0.0022946	-2.2973	-0.0018022	784.490515395932	50.767	0.31001	50.767	50.574	50.884	0	0.23209	0.0004976	NaN	5.2307	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19305000	+		36307	13306	23222	23343							0.08503605219709698
VGVPVKVS	8	Unmodified	_VGVPVKVS_					0	0	0			REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	784.492716	783.485439	0.62759	0.00049234	-3.4148	-0.0026789	-2.7872	-0.0021865	784.4898531229537	50.829	0.7308	50.516	50.229	50.96	-0.31381	-0.019823	0.00011335	NaN	5.2307	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7551400	+		36308	13306	23222	23343							0.08503605219709698
VGVPVKVS	8	Unmodified	_VGVPVKVS_					0	0	0			REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	784.492716	783.485439	0.82396	0.00064639	-3.6161	-0.0028368	-2.7922	-0.0021904	784.4897343956615	50.678	1.0363	50.323	50.005	51.041	-0.35483	-0.21227	-4.4603E-05	NaN	5.2307	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10315000	+		36309	13306	23222	23343							0.08503605219709698
VGVRESVLP	9	Unmodified	_VGVRESVLP_					0	0	0		nc|ENSG00000092929|Q70J99-3|UNC13D;ENSG00000092929|ENST00000207549|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF	nc|ENSG00000092929|Q70J99-3|UNC13D	nc|ENSG00000092929|Q70J99-3|UNC13D	MULTI-SECPEP	HCT116MG_D190212_S2	2	478.7741394042969	2	478.282192	954.549831	0.36199	0.00017313	0.22081	0.00010561	0.58279	0.00027874	478.2824217871718	36.433	0.25962	36.305	36.174	36.434	-0.12799					6	4	2	0	0	0	0.21227	1	13652	13652		10.824	1.4408	1	12086000			36310	1590	23223	23344	34955	34955					0.07073760305854648
VGVRESVLP	9	Unmodified	_VGVRESVLP_					0	0	0		nc|ENSG00000092929|Q70J99-3|UNC13D;ENSG00000092929|ENST00000207549|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF	nc|ENSG00000092929|Q70J99-3|UNC13D	nc|ENSG00000092929|Q70J99-3|UNC13D	MULTI-MATCH	HCT116MG_D190212_S1	1		2	478.282192	954.549831	0.13661	6.534E-05	-0.20881	-9.9869E-05	-0.072194	-3.4529E-05	478.2820260157397	36.317	0.21507	36.317	36.202	36.417	0	0.0060441	-0.00020255	NaN	10.824	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3359400			36311	1590	23223	23344							0.07073760305854648
VGVTAPLP	8	Unmodified	_VGVTAPLP_					0	0	0			REV__CILP2|p.R826H|1|0.24|ENSG00000160161|chr19:19545022-19545022|G/A|missense_variant	REV__CILP2|p.R826H|1|0.24|ENSG00000160161|chr19:19545022-19545022|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	377.2278137207031	2	377.228897	752.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.054	1	25.054	24.554	25.554	0								0	0	0	0.8837	1	8996	8996		2.8892	0	1		+		36312	10194	23224	23345	34956	34956					0.057116298113214725
VGVTGGSYGGY	11	Unmodified	_VGVTGGSYGGY_					0	0	0		tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	tr|U7SSE0|U7SSE0_FUSNUAcylaminoacyl-peptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01601PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	508.7378234863281	2	508.737814	1015.46108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.13	1	30.759	30.259	31.259	-0.37026								0	0	0	0.94284	1	11285	11285		10.074	2.1638	1				36313	18414	23225	23346	34957	34957					-0.046036997244755185
VGVTIAVV	8	Unmodified	_VGVTIAVV_					0	0	0			REV__ADGRG7|p.V664Ffs*4|1|0.11|ENSG00000144820|chr3:100668952-100668952|A/-|frameshift_variant	REV__ADGRG7|p.V664Ffs*4|1|0.11|ENSG00000144820|chr3:100668952-100668952|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	379.2438049316406	2	379.244547	756.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.823	1	25.454	24.954	25.954	-0.36914								0	0	0	0.8837	1	9316	9316		2.8892	0	1		+		36314	9873	23226	23347	34958	34958					0.08656202845418193
VGVTIAVV	8	Unmodified	_VGVTIAVV_					0	0	0			REV__ADGRG7|p.V664Ffs*4|1|0.11|ENSG00000144820|chr3:100668952-100668952|A/-|frameshift_variant	REV__ADGRG7|p.V664Ffs*4|1|0.11|ENSG00000144820|chr3:100668952-100668952|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	379.2439270019531	2	379.244547	756.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.965	1	25.675	25.175	26.175	-0.29022								0	0	0	0.8837	1	9227	9227		2.8892	0	1		+		36315	9873	23226	23347	34959	34959					0.08656202845418193
VGVVAPSL	8	Unmodified	_VGVVAPSL_					0	0	0		ENST00000510769.5_2_3:130745736-130748474:+|nuORF	ENST00000510769.5_2_3:130745736-130748474:+|nuORF	ENST00000510769.5_2_3:130745736-130748474:+|nuORF	MSMS	HCT116MG_D190212_S4	4	371.227294921875	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.381	1	37.998	37.498	38.498	-0.38235								0	0	0	0.8837	1	14064	14064		0.79363	0	1				36316	8497	23227	23348	34960	34960					0.06263629811314786
VGVVAPSL	8	Unmodified	_VGVVAPSL_					0	0	0		ENST00000510769.5_2_3:130745736-130748474:+|nuORF	ENST00000510769.5_2_3:130745736-130748474:+|nuORF	ENST00000510769.5_2_3:130745736-130748474:+|nuORF	MSMS	HCT116MG_D190212_S4	4	371.22735595703125	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.015	1	38.634	38.134	39.134	-0.38055								0	0	0	0.8837	1	14320	14320		0.79363	0	1				36317	8497	23227	23348	34961	34961					0.06263629811314786
VGVVIASI	8	Unmodified	_VGVVIASI_					0	0	0		tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	379.2438049316406	2	379.244547	756.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.902	1	19.902	19.402	20.402	0								0	0	0	0.8837	1	6927	6927		2.8892	0	1				36318	18415	23228	23349	34962	34962					0.08656202845418193
VGVVIASI	8	Unmodified	_VGVVIASI_					0	0	0		tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	379.2438049316406	2	379.244547	756.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.329	1	21.329	20.829	21.829	0								0	0	0	0.8837	1	7497	7497		2.8892	0	1				36319	18415	23228	23349	34963	34963					0.08656202845418193
VGVVIASI	8	Unmodified	_VGVVIASI_					0	0	0		tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	379.24371337890625	2	379.244547	756.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.225	1	26.225	25.725	26.725	0								0	0	0	0.8837	1	9466	9466		2.8892	0	1				36320	18415	23228	23349	34964	34964					0.08656202845418193
VGVVIASI	8	Unmodified	_VGVVIASI_					0	0	0		tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	tr|U7SSF0|U7SSF0_FUSNUMethyl-galactosidetransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01611PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	379.2437438964844	2	379.244547	756.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.494	1	28.494	27.994	28.994	0								0	0	0	0.8837	1	10381	10381		2.8892	0	1				36321	18415	23228	23349	34965	34965					0.08656202845418193
VGVVPSGP	8	Unmodified	_VGVVPSGP_					0	0	0		nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	MSMS	HCT116MG_D190212_S4	4	356.2430725097656	2	356.205421	710.39629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.915	1	43.541	43.041	44.041	-0.37379								0	0	0	0.8837	1	16160	16160		0.79363	0	1				36322	9543	23229	23350	34966	34966					0.029507702601904384
VGVVSATRLPE	11	Unmodified	_VGVVSATRLPE_					0	0	0		ENST00000394817.6_1_5:138463537-138534039:-|nuORF	ENST00000394817.6_1_5:138463537-138534039:-|nuORF	ENST00000394817.6_1_5:138463537-138534039:-|nuORF	MSMS	HCT116MG_D190212_S3	3	564.3229370117188	2	564.324588	1126.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.387	1	33.097	32.597	33.597	-0.29013								0	0	0	0.94145	1	12251	12251		10.8	1.4521	1				36323	7637	23230	23351	34967	34967					0.0763708605179545
VGVYKGKI	8	Unmodified	_VGVYKGKI_					0	0	0			REV__tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	REV__tr|U7ST27|U7ST27_FUSNUCarboxyl-terminalprocessingproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01258PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	432.2706298828125	2	432.271096	862.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.468	1	27.146	26.646	27.646	-0.32157								0	0	0	0.8837	1	9834	9834		2.8892	0	1		+		36324	17784	23231	23352	34968	34968					0.09087580628079195
VGWCQTLEAP	10	Unmodified	_VGWCQTLEAP_					0	0	0		ENST00000562057.5_1_15:41149312-41149591:+|nuORF	ENST00000562057.5_1_15:41149312-41149591:+|nuORF	ENST00000562057.5_1_15:41149312-41149591:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	552.2630004882812	2	552.263142	1102.51173	0.46188	0.00025508	0.14208	7.8466E-05	0.60396	0.00033354	552.2632771565593	34.771	1.1791	34.385	33.827	35.006	-0.38605					34	22	2	0	0	0	0.80458	1	12851	12851		11.64	0	1	5300400			36325	8823	23232	23353	34969	34969					-0.035424936711251576
VGWDHNTSMTI	11	Unmodified	_VGWDHNTSMTI_					0	0	0		ENST00000360150.8_1_12:29524593-29534076:-|nuORF	ENST00000360150.8_1_12:29524593-29534076:-|nuORF	ENST00000360150.8_1_12:29524593-29534076:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1260.5721435546875	1	1260.56775	1259.56047	0.75637	0.00095345	1.6675	0.002102	2.4239	0.0030555	1260.5695709490196	46.621	0.20709	46.621	46.492	46.699	0					6	3	2	0	0	0	0.74191	1	17703	17703		5.7319	1.7875	1	28527000			36326	7345	23233	23354	34970	34970					-0.058926251020466225
VGWDHNTSMTI	11	Unmodified	_VGWDHNTSMTI_					0	0	0		ENST00000360150.8_1_12:29524593-29534076:-|nuORF	ENST00000360150.8_1_12:29524593-29534076:-|nuORF	ENST00000360150.8_1_12:29524593-29534076:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1260.56775	1259.56047	0.81644	0.0010292	1.9168	0.0024162	2.7332	0.0034454	1260.5695233690071	46.947	0.41713	46.633	46.385	46.802	-0.31405	0.039261	0.00022699	NaN	5.7319	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1799300			36327	7345	23233	23354							-0.058926251020466225
VGWFLLLL	8	Unmodified	_VGWFLLLL_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	HCT116MG_D190212_S3	3	960.5966186523438	1	960.591702	959.584425	0.66747	0.00064117	3.0001	0.0028819	3.6676	0.003523	960.5954037053345	51.929	0.70371	51.62	51.227	51.931	-0.30927					18	13	2	0	0	0	0.87576	1	19565	19565		0.79363	0	1	10879000	+		36328	14038	23234	23355	34971	34971					0.1030162818460667
VGWFLLLL	8	Unmodified	_VGWFLLLL_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	960.591702	959.584425	0.61668	0.00059238	3.4654	0.0033288	4.082	0.0039212	960.5948969402673	51.42	0.56562	51.242	50.966	51.532	-0.17868	-0.20963	-4.7685E-05	NaN	0.79363	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93225000	+		36329	14038	23234	23355							0.1030162818460667
VGWFLLLL	8	Unmodified	_VGWFLLLL_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	960.591702	959.584425	0.66747	0.00064117	3.0001	0.0028819	3.6676	0.003523	960.5954037053345	51.929	0.70371	51.62	51.227	51.931	-0.30927	0.16819	-0.00049459	NaN	0.79363	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10879000	+		36330	14038	23234	23355							0.1030162818460667
VGWFLLLL	8	Unmodified	_VGWFLLLL_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	960.591702	959.584425	0.55344	0.00053163	3.5632	0.0034228	4.1166	0.0039544	960.5948974949099	51.838	1.0368	51.493	51.103	52.14	-0.34538	0.041434	4.628E-05	NaN	0.79363	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20962000	+		36331	14038	23234	23355							0.1030162818460667
VGWGQRLL	8	Unmodified	_VGWGQRLL_					0	0	0			REV__ENST00000586568.1_1_18:47809883-47810144:-|nuORF	REV__ENST00000586568.1_1_18:47809883-47810144:-|nuORF	MSMS	HCT116MG_D190212_S4	4	464.4817199707031	2	464.771794	927.529036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.308	1	14.147	13.647	14.647	-0.16089								0	0	0	0.8837	1	4522	4522		0.79363	0	1		+		36332	16658	23235	23356	34972	34972					0.06237214716861672
VGWLPKWRFLL	11	Unmodified	_VGWLPKWRFLL_					0	0	0			REV__ENSG00000159363|ENST00000326735|ATP13A2;REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-MSMS	HCT116MG_D190212_S4	4	473.25592041015625	3	472.283447	1413.82851	0.36271	0.0001713	0.01823	8.6099E-06	0.38094	0.00017991	472.28337128321107	54.406	1.4586	54.083	53.359	54.818	-0.32348					89	27	5	0	0	0	0.74191	1	20241	20241		0.50596	0.50596	1	20754000	+		36333	12803;17180	23236	23357	34973	34973					0.13815087278544524
VGWLWTYFKC	10	Unmodified	_VGWLWTYFKC_					0	0	0			REV__ENSG00000099194|ENST00000370355|SCD	REV__ENSG00000099194|ENST00000370355|SCD	MSMS	HCT116MG_D190212_S2	2	434.8822937011719	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7994	1	9.5347	9.0347	10.035	-0.26472								0	0	0	0.96911	1	3074	3074		0.15932	0.064481	1		+		36334	11041	23237	23358	34974	34974					-0.012047644693438997
VGWLWTYFKC	10	Unmodified	_VGWLWTYFKC_					0	0	0			REV__ENSG00000099194|ENST00000370355|SCD	REV__ENSG00000099194|ENST00000370355|SCD	MSMS	HCT116MG_D190212_S3	3	435.2348937988281	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.116	1	11.163	10.663	11.663	0.04739								0	0	0	0.96911	1	3398	3398		0.15932	0.064481	1		+		36335	11041	23237	23358	34975	34975					-0.012047644693438997
VGWRLHAWEH	10	Unmodified	_VGWRLHAWEH_					0	0	0			REV__CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	REV__CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.88812255859375	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.172	1	10.172	9.6716	10.672	0								0	0	0	0.97045	1	3108	3108		0.15932	0	1		+		36336	10200	23238	23359	34976	34976					0.008538634428759906
VGWRLHAWEH	10	Unmodified	_VGWRLHAWEH_					0	0	0			REV__CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	REV__CLCA4|p.S847Kfs*4|1|0.28|ENSG00000016602|chr1:86580120-86580121|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	430.8883361816406	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5489	1	9.2938	8.7938	9.7938	-0.25508								0	0	0	0.97045	1	2988	2988		0.15932	0	1		+		36337	10200	23238	23359	34977	34977					0.008538634428759906
VGWSLGVR	8	Unmodified	_VGWSLGVR_					0	0	0			REV__ENST00000562416.1_1_16:69788588-69788813:-|nuORF	REV__ENST00000562416.1_1_16:69788588-69788813:-|nuORF	MSMS	HCT116MG_D190212_S1	1	437.25067138671875	2	437.250695	872.486836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.849	1	18.849	18.349	19.349	0								0	0	0	0.8837	1	6503	6503		9.3474	0	1		+		36338	16499	23239	23360	34978	34978					0.04549239308471442
VGWTGPRP	8	Unmodified	_VGWTGPRP_					0	0	0		SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	435.2350769042969	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.782	1	10.509	10.009	11.009	-0.27365								0	0	0	0.8837	1	3433	3433		0.79363	0	1				36339	18166	23240	23361	34979	34979					0.01604666274374722
VGWTGPRP	8	Unmodified	_VGWTGPRP_					0	0	0		SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	435.23516845703125	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.892	1	11.603	11.103	12.103	-0.28953								0	0	0	0.8837	1	3859	3859		0.79363	0	1				36340	18166	23240	23361	34980	34980					0.01604666274374722
VGWTGPRP	8	Unmodified	_VGWTGPRP_					0	0	0		SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	435.23492431640625	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.464	1	12.526	12.026	13.026	0.06246								0	0	0	0.8837	1	3888	3888		0.79363	0	1				36341	18166	23240	23361	34981	34981					0.01604666274374722
VGWTGPRP	8	Unmodified	_VGWTGPRP_					0	0	0		SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	435.2353210449219	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.127	1	13.196	12.696	13.696	0.069158								0	0	0	0.8837	1	4144	4144		0.79363	0	1				36342	18166	23240	23361	34982	34982					0.01604666274374722
VGWTGPRP	8	Unmodified	_VGWTGPRP_					0	0	0		SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	435.2355651855469	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.664	1	10.474	9.9744	10.974	-0.18973								0	0	0	0.8837	1	3271	3271		0.79363	0	1				36343	18166	23240	23361	34983	34983					0.01604666274374722
VGWTGPRP	8	Unmodified	_VGWTGPRP_					0	0	0		SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	435.235107421875	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.283	1	13.118	12.618	13.618	-0.16496								0	0	0	0.8837	1	4159	4159		0.79363	0	1				36344	18166	23240	23361	34984	34984					0.01604666274374722
VGWTGPRP	8	Unmodified	_VGWTGPRP_					0	0	0		SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	435.15875244140625	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.485	1	13.323	12.823	13.823	-0.16233								0	0	0	0.8837	1	4231	4231		0.79363	0	1				36345	18166	23240	23361	34985	34985					0.01604666274374722
VGWTGPRP	8	Unmodified	_VGWTGPRP_					0	0	0		SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	SLC45A4|p.L147Sfs*232|1|0.11|ENSG00000022567|chr8:141219821-141219821|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	435.23504638671875	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.71	1	14.549	14.049	15.049	-0.16089								0	0	0	0.8837	1	4683	4683		0.79363	0	1				36346	18166	23240	23361	34986	34986					0.01604666274374722
VGWWWSWP	8	Unmodified	_VGWWWSWP_					0	0	0			REV__nc|ENSG00000066322|Q9BW60-2|ELOVL1	REV__nc|ENSG00000066322|Q9BW60-2|ELOVL1	MULTI-MSMS	HCT116MG_D190212_S3	3	552.2836303710938	2	552.25852	1102.50249	0.4458	0.0002462	-1.8494	-0.0010214	-1.4036	-0.00077516	552.257637759763	53.821	0.20884	53.521	53.404	53.613	-0.29946					8	3	3	0	0	0	0.86388	1	20335	20335		2.8892	0	1	4246700	+		36347	10716	23241	23362	34987	34987					-0.04466474174500945
VGYAALAL	8	Unmodified	_VGYAALAL_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MSMS	HCT116MG_D190212_S1	1	389.22802734375	2	389.228897	776.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.282	1	27.282	26.782	27.782	0								0	0	0	0.8837	1	9893	9893		2.8892	0	1				36348	5384	23242	23363	34988	34988					0.04607629811323477
VGYEILFPG	9	Unmodified	_VGYEILFPG_					0	0	0		SEC14L2|p.E293G|1|0.38|ENSG00000100003|chr22:30416054-30416054|A/G|missense_variant	SEC14L2|p.E293G|1|0.38|ENSG00000100003|chr22:30416054-30416054|A/G|missense_variant	SEC14L2|p.E293G|1|0.38|ENSG00000100003|chr22:30416054-30416054|A/G|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	498.2150573730469	2	497.765843	993.517133	0.52773	0.00026269	-2.7496	-0.0013687	-2.2219	-0.001106	497.7646839414373	31.318	0.20675	31.069	30.94	31.147	-0.24883					5	3	2	0	0	0	0.22203	1	11533	11533		18.135	8.0611	1	13186000			36349	18138	23243	23364	34989	34989					0.020115531830015243
VGYGKGMV	8	Unmodified	_VGYGKGMV_					0	0	0			REV__ENST00000246553.3_1_19:35843857-35843956:+|nuORF	REV__ENST00000246553.3_1_19:35843857-35843956:+|nuORF	MSMS	HCT116MG_D190212_S3	3	405.7109375	2	405.712556	809.41056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.312	1	26.163	25.663	26.663	-0.14924								0	0	0	0.8837	1	9434	9434		10.183	0.83596	1		+		36350	14575	23244	23365	34990	34990					-0.0017690058316475188
VGYKGGKP	8	Unmodified	_VGYKGGKP_					0	0	0			REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	403.2325744628906	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.021	1	9.756	9.256	10.256	-0.26472								0	0	0	0.8837	1	3152	3152		0.79363	0	1		+		36351	17753	23245	23366	34991	34991					0.03934148042867491
VGYKGGKP	8	Unmodified	_VGYKGGKP_					0	0	0			REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	403.2326965332031	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.565	1	11.614	11.114	12.114	0.049087								0	0	0	0.8837	1	3555	3555		0.79363	0	1		+		36352	17753	23245	23366	34992	34992					0.03934148042867491
VGYKGGKP	8	Unmodified	_VGYKGGKP_					0	0	0			REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	403.1724548339844	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.426	1	12.488	11.988	12.988	0.06246								0	0	0	0.8837	1	3874	3874		0.79363	0	1		+		36353	17753	23245	23366	34993	34993					0.03934148042867491
VGYKGGKP	8	Unmodified	_VGYKGGKP_					0	0	0			REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	403.0470275878906	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.716	1	12.779	12.279	13.279	0.06246								0	0	0	0.8837	1	3987	3987		0.79363	0	1		+		36354	17753	23245	23366	34994	34994					0.03934148042867491
VGYKGGKP	8	Unmodified	_VGYKGGKP_					0	0	0			REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	REV__tr|U7SQI7|U7SQI7_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01652PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	403.23272705078125	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.666	1	13.741	13.241	14.241	0.074899								0	0	0	0.8837	1	4349	4349		0.79363	0	1		+		36355	17753	23245	23366	34995	34995					0.03934148042867491
VGYKKRFVRRS	11	Unmodified	_VGYKKRFVRRS_					0	0	0			REV__NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant	REV__NBEAL1|p.A1274Qfs*17|1|0.1|ENSG00000144426|chr2:203135766-203135766|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	465.9494934082031	3	465.949239	1394.82589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.026	1	11.026	10.526	11.526	0								0	0	0	0.9619	1	3433	3433		0.094841	0	1		+		36356	12420	23246	23367	34996	34996					0.1442663187360722
VGYRPYSIP	9	Unmodified	_VGYRPYSIP_					0	0	0		CTSB|p.C179Y|1|0.34|ENSG00000164733|chr8:11847819-11847819|C/T|missense_variant	CTSB|p.C179Y|1|0.34|ENSG00000164733|chr8:11847819-11847819|C/T|missense_variant	CTSB|p.C179Y|1|0.34|ENSG00000164733|chr8:11847819-11847819|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	351.1913757324219	3	351.190553	1050.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.04	1	30.04	29.54	30.54	0								0	0	0	0.7696	1	11002	11002		1.1933	0	1				36357	616	23247	23368	34997	34997					0.026577603058512977
VGYSNRLLDFT	11	Unmodified	_VGYSNRLLDFT_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MSMS	HCT116MG_D190212_S1	1	429.0885925292969	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.167	1	10.167	9.6672	10.667	0								0	0	0	0.96121	1	3107	3107		0.45452	0.29519	1		+		36358	11130	23248	23369	34998	34998					0.020521672179029338
VGYSTSSL	8	Unmodified	_VGYSTSSL_					0	0	0			REV__nc|ENSG00000124568|Q14916-2|SLC17A1	REV__nc|ENSG00000124568|Q14916-2|SLC17A1	MSMS	HCT116MG_D190212_S2	2	407.2043151855469	2	407.203076	812.391599	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.942	1	11.652	11.152	12.152	-0.28953								0	0	0	0.8837	1	3878	3878		2.5775	0	1		+		36359	11789	23249	23370	34999	34999					-0.022101586732219403
VGYTYLQKH	9	Unmodified	_VGYTYLQKH_					0	0	0			REV__BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	REV__BRCA2|p.T2685Hfs*9|1|0.05|ENSG00000139618|chr13:32363251-32363251|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	370.19708251953125	3	370.197708	1107.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.281	1	28.075	27.575	28.575	-0.20593								0	0	0	0.7696	1	10228	10228		1.1933	0.12188	1		+		36360	10052	23250	23371	35000	35000					0.021811453345890186
VHAIKAIKK	9	Unmodified	_VHAIKAIKK_					0	0	0		tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	tr|U7SYC5|U7SYC5_FUSNUCarbamoylphosphatesynthaselargechainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=carBPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	504.33795166015625	2	504.339844	1006.66514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.324	1	44.017	43.517	44.517	-0.30759								0	0	0	0.77008	1	16566	16566		0.6015	0	1				36361	18515	23251	23372	35001	35001					0.16206909227503274
VHASPDHGR	9	Unmodified	_VHASPDHGR_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	HCT116MG_D190212_S1	1	488.75799560546875	2	488.24139	974.468226	0.33091	0.00016156	1.6197	0.00079081	1.9506	0.00095237	488.24235944401954	45.477	0.26064	45.477	45.347	45.607	0					5	4	2	0	0	0	0.26422	1	17280	17280		7.2892	0.56607	1	2992700	+		36362	13614	23252	23373	35002	35002					-0.020029223333835944
VHDDEIVP	8	Unmodified	_VHDDEIVP_					0	0	0			REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MSMS	HCT116MG_D190212_S3	3	462.1466979980469	2	462.227082	922.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.168	1	37.867	37.367	38.367	-0.30137								0	0	0	0.8837	1	14129	14129		10.183	0	1		+		36363	12465	23253	23374	35003	35003					-0.02471084753199193
VHDHDTQLA	9	Unmodified	_VHDHDTQLA_					0	0	0			REV__nc|ENSG00000171703|Q15560-2|TCEA2	REV__nc|ENSG00000171703|Q15560-2|TCEA2	MULTI-MSMS	HCT116MG_D190212_S1	1	518.2464599609375	2	518.246338	1034.47812	0.67324	0.0003489	-0.42341	-0.00021943	0.24983	0.00012947	518.2460567727984	28.668	0.36905	28.668	28.482	28.851	0					13	6	3	0	0	0	0.32162	1	10456	10456		28.487	1.6032	1	28169000	+		36364	13355	23254	23375	35004	35004					-0.03773779118660059
VHDHDTQLA	9	Unmodified	_VHDHDTQLA_					0	0	0			REV__nc|ENSG00000171703|Q15560-2|TCEA2	REV__nc|ENSG00000171703|Q15560-2|TCEA2	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2567749023438	2	518.246338	1034.47812	0.248	0.00012853	0.1667	8.6394E-05	0.41471	0.00021492	518.2463937165439	29.001	0.61449	28.684	28.504	29.119	-0.31613					23	11	4	0	0	0	0.55223	1	10590	10590		13.906	2.2658	1	229540000	+		36365	13355	23254	23375	35005	35005					-0.03773779118660059
VHDREAAVP	9	Unmodified	_VHDREAAVP_					0	0	0			REV__nc|ENSG00000167524|Q96LW2|RSKR	REV__nc|ENSG00000167524|Q96LW2|RSKR	MSMS	HCT116MG_D190212_S1	1	497.25927734375	2	497.259248	992.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.052	1	16.052	15.552	16.552	0								0	0	0	0.76818	1	5376	5376		7.2892	1.5288	1		+		36366	13149	23255	23376	35006	35006					0.007391151236106452
VHEERLPS	8	Unmodified	_VHEERLPS_					0	0	0			REV__ENST00000580997.1_1_17:7468099-7469096:+|nuORF	REV__ENST00000580997.1_1_17:7468099-7469096:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	483.75390625	2	483.753798	965.493044	0.30643	0.00014824	-0.20722	-0.00010024	0.099212	4.7994E-05	483.75369588231695	25.856	0.26078	25.729	25.598	25.859	-0.12795					11	4	3	0	0	0	0.55794	1	9272	9272		36.044	5.4077	1	15420000	+		36367	12862	23256	23377	35007	35007					0.008917127493305088
VHFPRPVWL	9	Unmodified	_VHFPRPVWL_					0	0	0		CACUL1|p.F340Lfs*128|1|0.28|ENSG00000151893|chr10:118691270-118691270|A/-|frameshift_variant	CACUL1|p.F340Lfs*128|1|0.28|ENSG00000151893|chr10:118691270-118691270|A/-|frameshift_variant	CACUL1|p.F340Lfs*128|1|0.28|ENSG00000151893|chr10:118691270-118691270|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	384.2232971191406	3	384.222188	1149.64473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.987	1	48.622	48.122	49.122	-0.365								0	0	0	0.76991	1	18155	18155		1.1933	0	1				36368	310	23257	23378	35008	35008					0.07589738567685345
VHGGTEVLQ	9	Unmodified	_VHGGTEVLQ_					0	0	0			REV__nc|ENSG00000254536|Q6QHF9-5|PAOX	REV__nc|ENSG00000254536|Q6QHF9-5|PAOX	MULTI-MSMS	HCT116MG_D190212_S2	2	470.24847412109375	2	470.248349	938.482145	0.29766	0.00013998	-0.13381	-6.2922E-05	0.16386	7.7054E-05	470.24829963686926	35.049	0.25872	34.891	34.709	34.968	-0.15834					7	4	2	0	0	0	0.14972	1	13079	13079		48.346	2.606	1	14438000	+		36369	12555	23258	23379	35009	35009					0.010443103750390037
VHGGTEVLQ	9	Unmodified	_VHGGTEVLQ_					0	0	0			REV__nc|ENSG00000254536|Q6QHF9-5|PAOX	REV__nc|ENSG00000254536|Q6QHF9-5|PAOX	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	470.248349	938.482145	0.35283	0.00016592	-0.15994	-7.5211E-05	0.19289	9.0708E-05	470.2480128488175	34.902	0.26015	34.902	34.753	35.013	0	0.0055917	-2.294E-05	NaN	48.346	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4439600	+		36370	12555	23258	23379							0.010443103750390037
VHGGTEVLQ	9	Unmodified	_VHGGTEVLQ_					0	0	0			REV__nc|ENSG00000254536|Q6QHF9-5|PAOX	REV__nc|ENSG00000254536|Q6QHF9-5|PAOX	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	470.248349	938.482145	0.29766	0.00013998	-0.13381	-6.2922E-05	0.16386	7.7054E-05	470.24829963686926	35.049	0.25872	34.891	34.709	34.968	-0.15834	-0.0055917	1.639E-06	NaN	48.346	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14438000	+		36371	12555	23258	23379							0.010443103750390037
VHGSAPWS	8	Unmodified	_VHGSAPWS_					0	0	0			REV__nc|ENSG00000141956|P57071|PRDM15	REV__nc|ENSG00000141956|P57071|PRDM15	MULTI-MSMS	HCT116MG_D190212_S2	2	420.7033386230469	2	420.703577	839.392602	0.034387	1.4467E-05	0.13826	5.8167E-05	0.17265	7.2634E-05	420.7035406582014	28.437	0.3095	28.107	27.977	28.287	-0.32987					9	5	2	0	0	0	0.77285	1	10381	10381		14.582	1.0738	1	46326000	+		36372	17150	23259	23380	35010	35010					-0.03351899513677381
VHGSSRLEEFS	11	Unmodified	_VHGSSRLEEFS_					0	0	0		nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20;TCF20|p.P1561Lfs*54|1|0.31|ENSG00000100207|chr22:42210624-42210624|G/-|frameshift_variant;TCF20|p.K1579Nfs*36|1|0.18|ENSG00000100207|chr22:42210569-42210569|T/-|frameshift_variant;TCF20|p.Y1725Ifs*157|1|0.43|ENSG00000100207|chr22:42210133-42210133|A/-|frameshift_variant;TCF20|p.L1388Efs*6|1|0.17|ENSG00000100207|chr22:42211143-42211144|AA/-|frameshift_variant;TCF20|p.L1424Gfs*21|1|0.32|ENSG00000100207|chr22:42211037-42211038|-/TCCT|frameshift_variant;TCF20|p.R570Dfs*37|1|0.61|ENSG00000100207|chr22:42213599-42213599|G/-|frameshift_variant;TCF20|p.G1028Efs*6|1|0.09|ENSG00000100207|chr22:42212223-42212223|C/-|frameshift_variant	nc|ENSG00000100207|Q9UGU0-2|TCF20	nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-MSMS	HCT116MG_D190212_S4	4	624.8053588867188	2	624.304384	1246.59421	0.23663	0.00014773	-0.24389	-0.00015226	-0.0072616	-4.5335E-06	624.3040130190662	18.608	0.51872	18.428	18.097	18.615	-0.18052					14	9	2	0	0	0	0.72792	1	6230	6230		11.495	0	1	1401900			36373	1674	23260	23381	35011	35011					-0.019218803386365835
VHIHFLIVN	9	Unmodified	_VHIHFLIVN_					0	0	0		ENST00000586898.1_1_17:49269519-49270175:-|nuORF	ENST00000586898.1_1_17:49269519-49270175:-|nuORF	ENST00000586898.1_1_17:49269519-49270175:-|nuORF	MSMS	HCT116MG_D190212_S4	4	546.32373046875	2	546.321651	1090.62875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.481	1	62.232	61.732	62.732	-0.24919								0	0	0	0.77008	1	23594	23594		0.6015	0.076735	1				36374	8999	23261	23382	35012	35012					0.08706032330792368
VHILHEMAQ	9	Unmodified	_VHILHEMAQ_					0	0	0			REV__USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	REV__USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	539.2808837890625	2	539.279126	1076.5437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.212	1	23.832	23.332	24.332	-0.38003								0	0	0	0.64498	1	8666	8666		21.747	3.3736	1		+		36375	12241	23262	23383	35013	35013					0.008489188026715055
VHILHEMAQ	9	Unmodified	_VHILHEMAQ_					0	0	0			REV__USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	REV__USO1|p.K251*|2|0.26|ENSG00000138768|chr4:75782746-75782747|-/T|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	538.7540283203125	2	539.279126	1076.5437	0.72863	0.00039293	3.0329	0.0016356	3.7615	0.0020285	539.2805299877299	24.135	0.15554	23.755	23.666	23.822	-0.38003					4	2	2	0	0	0	0.23301	1	8632	8632		15.847	0.5987	1	5710100	+		36376	12241	23262	23383	35014	35014					0.008489188026715055
VHINVVLVR	9	Unmodified	_VHINVVLVR_					0	0	0		ENSG00000156140|ENST00000286657|ADAMTS3;ADAMTS3|p.S556Hfs*105|1|0.26|ENSG00000156140|chr4:72313757-72313757|C/-|frameshift_variant	ENSG00000156140|ENST00000286657|ADAMTS3	ENSG00000156140|ENST00000286657|ADAMTS3	MSMS	HCT116MG_D190212_S2	2	350.22601318359375	3	350.225709	1047.6553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.389	1	44.304	43.804	44.804	-0.084797								0	0	0	0.76886	1	16856	16856		4.897	1.9018	1				36377	4275	23263	23384	35015	35015					0.13337721222137588
VHKVLNNRY	9	Unmodified	_VHKVLNNRY_					0	0	0			REV__ENSG00000176853|ENST00000334705|FAM91A1	REV__ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	HCT116MG_D190212_S2	2	571.8255615234375	2	571.825089	1141.63563	0.38101	0.00021787	0.0019844	1.1347E-06	0.38299	0.000219	571.8252508870339	27.867	0.20441	27.525	27.398	27.602	-0.34201					5	3	2	0	0	0	0.58135	1	10168	10168		18.135	6.4947	1	14544000	+		36378	13554	23264	23385	35016	35016					0.07047345211367428
VHLDGPGV	8	Unmodified	_VHLDGPGV_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MSMS	HCT116MG_D190212_S1	1	397.21368408203125	2	397.213778	792.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.69	1	43.69	43.19	44.19	0								0	0	0	0.8837	1	16513	16513		6.3541	3.4649	1				36379	2847	23265	23386	35017	35017					0.008492711461599356
VHLKRVTHTV	10	Unmodified	_VHLKRVTHTV_					0	0	0			REV__ENST00000531905.1_1_11:65631029-65631326:+|nuORF	REV__ENST00000531905.1_1_11:65631029-65631326:+|nuORF	MSMS	HCT116MG_D190212_S4	4	397.24334716796875	3	397.243652	1188.70913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.278	1	42.903	42.403	43.403	-0.37433								0	0	0	0.96183	1	15907	15907		2.086	0	1		+		36380	13400	23266	23387	35018	35018					0.12231893653824955
VHLTPEEK	8	Unmodified	_VHLTPEEK_					0	0	0		ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	476.758544921875	2	476.758549	951.502546	0.53602	0.00025555	-0.19856	-9.4665E-05	0.33746	0.00016089	476.7582914038162	20.943	0.2073	20.734	20.604	20.811	-0.20959					5	3	2	0	0	0	0.15825	1	7211	7211		81.89	31.035	1	2890400		+	36381	6480	23267	23388	35019	35019					0.0248548103485291
VHLTPEEK	8	Unmodified	_VHLTPEEK_					0	0	0		ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	476.758549	951.502546	0.3314	0.000158	0.059818	2.8519E-05	0.39122	0.00018652	476.7585201201319	20.826	0.20882	20.826	20.696	20.904	0	0.046189	0.0001288	NaN	81.89	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1573800		+	36382	6480	23267	23388							0.0248548103485291
VHNLKPGL	8	Unmodified	_VHNLKPGL_					0	0	0			REV__ENSG00000115604|ENST00000233957|IL18R1	REV__ENSG00000115604|ENST00000233957|IL18R1	MSMS	HCT116MG_D190212_S1	1	439.2662658691406	2	439.266345	876.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.415	1	22.415	21.915	22.915	0								0	0	0	0.8837	1	7934	7934		11.114	0	1		+		36383	11550	23268	23389	35020	35020					0.07493812342568162
VHNRLIRIFIL	11	Unmodified	_VHNRLIRIFIL_					0	0	0			REV__GAS2L2|p.V296Gfs*13|1|0.03|ENSG00000270765|chr17:35747211-35747214|CTTA/-|frameshift_variant	REV__GAS2L2|p.V296Gfs*13|1|0.03|ENSG00000270765|chr17:35747211-35747214|CTTA/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	697.4404296875	2	697.443163	1392.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.652	1	28.652	28.152	29.152	0								0	0	0	0.95925	1	10443	10443		1.4819	0.28856	1		+		36384	14439	23269	23390	35021	35021					0.19105277055837178
VHPKKEEEK	9	Unmodified	_VHPKKEEEK_					0	0	0			REV__ENSG00000152284|ENST00000282111|TCF7L1	REV__ENSG00000152284|ENST00000282111|TCF7L1	MSMS	HCT116MG_D190212_S4	4	562.3068237304688	2	562.308938	1122.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.019	1	39.64	39.14	40.14	-0.37936								0	0	0	0.76902	1	14668	14668		4.3292	0	1		+		36385	12628	23270	23391	35022	35022					0.04692513017721467
VHPPPVLLPVW	11	Unmodified	_VHPPPVLLPVW_					0	0	0		ENST00000344651.4_1_12:121159274-121159475:+|nuORF	ENST00000344651.4_1_12:121159274-121159475:+|nuORF	ENST00000344651.4_1_12:121159274-121159475:+|nuORF	MSMS	HCT116MG_D190212_S1	1	627.3123779296875	2	627.373884	1252.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.294	1	55.294	54.794	55.794	0								0	0	0	0.94924	1	21229	21229		6.7232	0.99131	1				36386	7253	23271	23392	35023	35023					0.11695734087493292
VHPVTGPV	8	Unmodified	_VHPVTGPV_					0	0	0			REV__ENST00000318291.4_1_12:752234-753264:+|nuORF	REV__ENST00000318291.4_1_12:752234-753264:+|nuORF	MSMS	HCT116MG_D190212_S1	1	403.232421875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.779	1	63.779	63.279	64.279	0								0	0	0	0.8837	1	24635	24635		0.79363	0	1		+		36387	14872	23272	23393	35024	35024					0.03934148042867491
VHTAVSYNTVP	11	Unmodified	_VHTAVSYNTVP_					0	0	0			REV__nc|ENSG00000186090|Q70Z44|HTR3D	REV__nc|ENSG00000186090|Q70Z44|HTR3D	MULTI-SECPEP	HCT116MG_D190212_S1	1	594.79248046875	2	594.306395	1186.59824	0.37792	0.0002246	2.2537	0.0013394	2.6316	0.001564	594.307904157299	36.809	0.15598	36.809	36.679	36.835	0					4	2	2	0	0	0	0.36341	1	13696	13696		10.8	0.64894	1	2276400	+		36388	17249	23273	23394	35025	35025					0.012402091550939076
VHTPAPAA	8	Unmodified	_VHTPAPAA_					0	0	0			REV__ENSG00000128564|ENST00000249330|VGF	REV__ENSG00000128564|ENST00000249330|VGF	MSMS	HCT116MG_D190212_S2	2	382.20721435546875	2	382.208495	762.402438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.43	1	23.045	22.545	23.545	-0.3852								0	0	0	0.8837	1	8350	8350		5.7604	2.8712	1		+		36389	11876	23274	23395	35026	35026					0.011732884917023512
VHTQLAGKIT	10	Unmodified	_VHTQLAGKIT_					0	0	0		nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENST00000476056.5_1_20:43565368-43567380:+|nuORF;ENST00000482486.1_1_20:43566688-43567841:+|nuORF	nc|ENSG00000101104|Q4VXU2|PABPC1L	nc|ENSG00000101104|Q4VXU2|PABPC1L	MSMS	HCT116MG_D190212_S3	3	534.3121948242188	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.504	1	31.234	30.734	31.734	-0.27028								0	0	0	0.92917	1	11512	11512		9.3831	0.78985	1				36390	1752	23275	23396	35027	35027					0.08285120742925756
VHVFQATN	8	Unmodified	_VHVFQATN_					0	0	0			REV__ENST00000593859.5_1_19:51323389-51327022:-|nuORF	REV__ENST00000593859.5_1_19:51323389-51327022:-|nuORF	MSMS	HCT116MG_D190212_S4	4	458.2359313964844	2	458.237784	914.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.457	1	37.073	36.573	37.573	-0.3839								0	0	0	0.8837	1	13746	13746		6.3541	0.59368	1		+		36391	13165	23276	23397	35028	35028					0.0003634506618936939
VHVGPVPG	8	Unmodified	_VHVGPVPG_					0	0	0		ENST00000544492.5_1_13:49076918-49089862:-|nuORF	ENST00000544492.5_1_13:49076918-49089862:-|nuORF	ENST00000544492.5_1_13:49076918-49089862:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	381.8727722167969	2	381.218863	760.423173	-0.25767	-9.8229E-05	0.20385	7.7711E-05	-0.053823	-2.0518E-05	381.21881687284576	32.51	0.36458	32.28	32.098	32.463	-0.23009					16	6	3	0	0	0	0.33364	1	12088	12088		0.79363	0	1	58784000			36392	8707	23277	23398	35029	35029					0.033378788713775975
VHVHTIKI	8	Unmodified	_VHVHTIKI_					0	0	0			REV__ENSG00000126231|ENST00000375547|PROZ	REV__ENSG00000126231|ENST00000375547|PROZ	MSMS	HCT116MG_D190212_S1	1	473.7931213378906	2	473.795269	945.575986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.34	1	47.34	46.84	47.84	0								0	0	0	0.8837	1	17984	17984		5.2307	0.47466	1		+		36393	11836	23278	23399	35030	35030					0.10102074267990702
VHVLCLTL	8	Unmodified	_VHVLCLTL_					0	0	0		nc|ENSG00000181264|Q6ZRR5-2|TLCD5;nc|ENSG00000181264|Q6ZRR5-4|TLCD5;ENST00000531346.1_1_11:120196007-120201221:+|nuORF;ENSG00000181264|ENST00000375095|TLCD5;nc|ENSG00000181264|Q6ZRR5-3|TLCD5	nc|ENSG00000181264|Q6ZRR5-2|TLCD5	nc|ENSG00000181264|Q6ZRR5-2|TLCD5	MSMS	HCT116MG_D190212_S2	2	449.266357421875	2	449.264956	896.515359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.2	1	35.057	34.557	35.557	-0.1438								0	0	0	0.8837	1	13122	13122		15.768	0	1				36394	5629	23279	23400	35031	35031					0.06296220893398186
VHVLVCLL	8	Unmodified	_VHVLVCLL_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MSMS	HCT116MG_D190212_S4	4	448.2748718261719	2	448.275324	894.536095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.433	1	26.132	25.632	26.632	-0.30087								0	0	0	0.8837	1	9416	9416		0.79363	0	1		+		36395	17334	23280	23401	35032	35032					0.08460811273062063
VHVPMPVL	8	Unmodified	_VHVPMPVL_					0	0	0			REV__SOX9|p.R94H|1|0.32|ENSG00000125398|chr17:72121672-72121672|G/A|missense_variant	REV__SOX9|p.R94H|1|0.32|ENSG00000125398|chr17:72121672-72121672|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	446.26055908203125	2	446.259674	890.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.54	1	35.241	34.741	35.741	-0.29922								0	0	0	0.8837	1	13111	13111		0.79363	0	1		+		36396	17543	23281	23402	35033	35033					0.05516238238965343
VHWAQHPL	8	Unmodified	_VHWAQHPL_					0	0	0		EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENSG00000116406|ENST00000318130|EDEM3	EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant	EDEM3|p.F658Lfs*4|1|0.35|ENSG00000116406|chr1:184708216-184708216|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	494.26007080078125	2	494.261594	986.508634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.53	1	50.171	49.671	50.671	-0.35878								0	0	0	0.8837	1	18777	18777		5.7604	0	1				36397	755	23282	23403	35034	35034					0.01484044057031042
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	HCT116MG_D190212_S1	1	485.308837890625	2	485.30821	968.601866	0.045917	2.2284E-05	0.45269	0.00021969	0.49861	0.00024198	485.3083838772287	50.428	0.25707	50.428	50.266	50.523	0					7	4	2	0	0	0	0.023778	1	19254	19254		92.653	14.504	1	24584000			36398	1782	23283	23404	35035	35035					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	HCT116MG_D190212_S2	2	485.3080139160156	2	485.30821	968.601866	0.26621	0.00012919	0.455	0.00022081	0.7212	0.00035001	485.30843788654374	50.549	0.31588	50.377	50.191	50.507	-0.1719					11	5	3	0	0	0	0.30509	1	19364	19364		30.225	9.7712	1	37669000			36399	1782	23283	23404	35036	35036					0.11630923719633302
VIAHNTRAP	9	Unmodified	_VIAHNTRAP_					0	0	0		ENSG00000127423|ENST00000374298|AUNIP;nc|ENSG00000127423|Q9H7T9-2|AUNIP	ENSG00000127423|ENST00000374298|AUNIP	ENSG00000127423|ENST00000374298|AUNIP	MULTI-MSMS	HCT116MG_D190212_S4	4	489.77740478515625	2	489.777608	977.540663	-0.3212	-0.00015732	0.10691	5.2363E-05	-0.21429	-0.00010495	489.77755185741506	17.473	0.4673	17.303	17.121	17.588	-0.17047					12	8	2	0	0	0	0.41514	1	5806	5806		21.747	4.8044	1	1951000			36400	2965	23284	23405	35037	35037					0.050994117401728545
VIALNKKKRK	10	Unmodified	_VIALNKKKRK_					0	0	0			REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	MSMS	HCT116MG_D190212_S4	4	599.4130859375	2	599.411332	1196.80811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.261	1	51.915	51.415	52.415	-0.34538								0	0	0	0.93576	1	19476	19476		7.9102	1.187	1		+		36401	15040	23285	23406	35038	35038					0.21757916618730633
VIDDWCRCDL	10	Unmodified	_VIDDWCRCDL_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MSMS	HCT116MG_D190212_S4	4	619.2678833007812	2	619.270641	1236.52673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.51	1	31.14	30.64	31.64	-0.37026								0	0	0	0.92607	1	11439	11439		10.074	0.6908	1				36402	4010	23286	23407	35039	35039					-0.08207369865431247
VIDEPVRL	8	Unmodified	_VIDEPVRL_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	470.7764892578125	2	470.776742	939.538931	0.23006	0.00010831	-0.66286	-0.00031206	-0.4328	-0.00020375	470.7764210455654	41.387	0.25634	41.319	41.14	41.396	-0.068199					7	4	2	0	0	0	0.10976	1	15639	15639		92.822	7.4654	1	46638000			36403	438	23287	23408	35040	35040					0.0667435793156983
VIDEPVRL	8	Unmodified	_VIDEPVRL_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	470.7767333984375	2	470.776742	939.538931	-0.010682	-5.0289E-06	-0.21614	-0.00010176	-0.22683	-0.00010678	470.77651382631973	41.595	0.19484	41.292	41.22	41.415	-0.30257					16	10	2	0	0	0	0.10976	1	15458	15458		92.822	7.4654	1	26152000			36404	438	23287	23408	35041	35041					0.0667435793156983
VIDEPVRL	8	Unmodified	_VIDEPVRL_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	470.7769775390625	2	470.776742	939.538931	0.19479	9.1705E-05	-0.00023294	-1.0966E-07	0.19456	9.1595E-05	470.77659792916063	41.637	0.14378	41.261	41.239	41.383	-0.37637					17	9	2	0	0	0	0.076688	1	15282	15282		100.37	7.5494	1	12290000			36405	438	23287	23408	35042	35042					0.0667435793156983
VIDEPVRL	8	Unmodified	_VIDEPVRL_					0	0	0		MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant;nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|398|11.56|0.71|4.03|-|ENST00000368653|MKI67,MKI67;MKI67|p.R3036Yfs*27|1|0.04|ENSG00000148773|chr10:128102735-128102736|-/AAAATAA|frameshift_variant;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.L783Yfs*49|1|0.05|ENSG00000148773|chr10:128110446-128110447|-/GT|frameshift_variant;MKI67|p.L783Hfs*49|1|0.05|ENSG00000148773|chr10:128110447-128110448|-/TG|frameshift_variant;MKI67|p.K319Rfs*27|1|0.35|ENSG00000148773|chr10:128115454-128115454|C/-|frameshift_variant;MKI67|p.T672Nfs*4|1|0.25|ENSG00000148773|chr10:128112000-128112001|-/T|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MKI67|p.L2374*|1|0.28|ENSG00000148773|chr10:128104719-128104719|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	470.776742	939.538931	0.4543	0.00021387	0.26889	0.00012659	0.72319	0.00034046	470.77659512691326	41.367	0.15585	41.367	41.237	41.393	0	0.057211	0.00049845	NaN	100.37	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4087000			36406	438	23287	23408							0.0667435793156983
VIDGDKEIY	9	Unmodified	_VIDGDKEIY_					0	0	0			REV__tr|U7T0Z7|U7T0Z7_FUSNUPhosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00751PE=3SV=1	REV__tr|U7T0Z7|U7T0Z7_FUSNUPhosphoesteraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00751PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.7386474609375	2	526.268947	1050.52334	0.62025	0.00032642	-0.43338	-0.00022807	0.18688	9.8349E-05	526.2687830014348	36.32	0.31121	36.192	36.019	36.33	-0.12799					10	5	3	0	0	0	0.1389	1	13570	13570		53.833	3.8998	1	15491000	+		36407	17900	23288	23409	35043	35043					0.00010026623863268469
VIDIDNECCV	10	2 Carbamidomethyl (C)	_VIDIDNEC(Carbamidomethyl (C))C(Carbamidomethyl (C))V_	VIDIDNEC(1)C(1)V		VIDIDNEC(42)C(42)V		0	2	0			REV__GADD45G|p.F84V|1|0.2|ENSG00000130222|chr9:89605761-89605761|T/G|missense_variant	REV__GADD45G|p.F84V|1|0.2|ENSG00000130222|chr9:89605761-89605761|T/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	618.7667846679688	2	618.765388	1235.51622	0.35828	0.00022169	-2.8375	-0.0017557	-2.4792	-0.001534	618.7635270646535	31.57	0.73079	31.299	30.803	31.534	-0.27028					17	13	2	0	0	0	0.40515	1	11483	11483		41.84	10.571	1	11678000	+		36408	16843	23289	23410	35044	35044	61;62				-0.09211397310514258
VIDQKVYEI	9	Unmodified	_VIDQKVYEI_					0	0	0		ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	ENST00000406934.5_1_22:38246060-38259001:+|nuORF	ENST00000406934.5_1_22:38246060-38259001:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	553.8084106445312	2	553.808239	1105.60193	0.26381	0.0001461	-0.22588	-0.00012509	0.037932	2.1007E-05	553.8082032064328	39.995	0.25944	39.995	39.865	40.124	0					7	4	2	0	0	0	0.19011	1	15043	15043		42.312	2.3552	1	17508000			36409	1668	23290	23411	35045	35045					0.05334878928965736
VIDQKVYEI	9	Unmodified	_VIDQKVYEI_					0	0	0		ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	ENST00000406934.5_1_22:38246060-38259001:+|nuORF	ENST00000406934.5_1_22:38246060-38259001:+|nuORF	MSMS	HCT116MG_D190212_S2	2	553.8074340820312	2	553.808239	1105.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.024	1	39.951	39.451	40.451	-0.072838								0	0	0	0.0021192	1	15082	15082		125.04	37.78	1				36410	1668	23290	23411	35046	35046					0.05334878928965736
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S2	2	525.2671508789062	2	525.266739	1048.51892	0.63856	0.00033541	0.086984	4.569E-05	0.72554	0.0003811	525.2667125289058	36.257	0.25884	36.129	35.967	36.226	-0.12799					8	4	2	0	0	0	0.055677	1	13575	13575		71.922	17.149	1	17726000			36411	3183	23291	23412	35047	35047					-0.0033943779901619564
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2669677734375	2	525.266739	1048.51892	0.15281	8.0264E-05	0.15391	8.0843E-05	0.30671	0.00016111	525.266654967401	36.428	0.46822	36.127	35.989	36.457	-0.30113					16	8	3	0	0	0	0.069315	1	13485	13485		65.235	19.214	1	7789700			36412	3183	23291	23412	35048	35048					-0.0033943779901619564
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	HCT116MG_D190212_S3	3	1049.527099609375	1	1049.5262	1048.51892	0.36073	0.00037859	0.24824	0.00026054	0.60897	0.00063913	1049.52593791248	36.449	0.26031	36.147	36.041	36.301	-0.30113					7	4	2	0	0	0	0.26536	1	13509	13509		34.402	5.3201	1	3075500			36413	3183	23291	23412	35049	35049					-0.0033943779901619564
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	525.266739	1048.51892	0.3938	0.00020685	-0.49871	-0.00026195	-0.10491	-5.5103E-05	525.266598244835	36.144	0.21133	36.144	36.046	36.257	0	0.010395	-0.00046735	NaN	71.922	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2676300			36414	3183	23291	23412							-0.0033943779901619564
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1049.5262	1048.51892	0.90898	0.000954	-0.25823	-0.00027102	0.65074	0.00068297	1049.5271584053835	36.25	0.20727	36.122	36.019	36.226	-0.12799	-0.012791	-0.00036728	NaN	34.402	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13787000			36415	3183	23291	23412							-0.0033943779901619564
VIDSNSRSEHP	11	Unmodified	_VIDSNSRSEHP_					0	0	0			REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	620.7996215820312	2	620.799466	1239.58438	0.78154	0.00048518	-0.58993	-0.00036623	0.1916	0.00011895	620.7990492696051	32.959	0.29476	32.959	32.794	33.089	0					10	5	2	0	0	0	0.36968	1	12183	12183		57.722	57.722	1	52158000	+		36416	17015	23292	23413	35050	35050					-0.025830683440062785
VIDSNSRSEHP	11	Unmodified	_VIDSNSRSEHP_					0	0	0			REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	621.3939208984375	2	620.799466	1239.58438	0.7372	0.00045765	-0.48782	-0.00030284	0.24937	0.00015481	620.7992357661634	33.082	0.41634	32.871	32.739	33.156	-0.21135					15	7	4	0	0	0	0.36968	3	12260	12238;12260;12269		57.722	21.537	1	206240000	+		36417	17015	23292	23413	35051;35052;35053	35052					-0.025830683440062785
VIDSNSRSEHP	11	Unmodified	_VIDSNSRSEHP_					0	0	0			REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	620.7993774414062	2	620.799466	1239.58438	0.7372	0.00045765	-0.48782	-0.00030284	0.24937	0.00015481	620.7992357661634	33.082	0.41634	32.871	32.739	33.156	-0.21135					15	7	4	0	0	0	0.24394	1	12269	12269		57.722	15.882	1	206240000	+		36418	17015	23292	23413	35054	35054					-0.025830683440062785
VIDSNSRSEHP	11	Unmodified	_VIDSNSRSEHP_					0	0	0			REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	620.7993774414062	2	620.799466	1239.58438	0.53786	0.0003339	-0.025644	-1.592E-05	0.51222	0.00031798	620.799343232125	33.242	0.13939	32.952	32.91	33.049	-0.29013					9	6	2	0	0	0	0.46155	1	12199	12199		49.554	15.153	1	13634000	+		36419	17015	23292	23413	35055	35055					-0.025830683440062785
VIDSNSRSEHP	11	Unmodified	_VIDSNSRSEHP_					0	0	0			REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	620.799466	1239.58438	0.78154	0.00048518	-0.58993	-0.00036623	0.1916	0.00011895	620.7990492696051	32.959	0.29476	32.959	32.794	33.089	0	0.031912	-0.00010939	NaN	57.722	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52158000	+		36420	17015	23292	23413							-0.025830683440062785
VIDSNSRSEHP	11	Unmodified	_VIDSNSRSEHP_					0	0	0			REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	REV__MEF2C|p.T80S|1|0.04|ENSG00000081189|chr5:88804618-88804618|T/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	620.799466	1239.58438	0.53786	0.0003339	-0.025644	-1.592E-05	0.51222	0.00031798	620.799343232125	33.242	0.13939	32.952	32.91	33.049	-0.29013	0.024755	0.00059123	NaN	57.722	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13634000	+		36421	17015	23292	23413							-0.025830683440062785
VIDWHNYGY	9	Unmodified	_VIDWHNYGY_					0	0	0		nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1	nc|ENSG00000033011|Q9BT22-2|ALG1	nc|ENSG00000033011|Q9BT22-2|ALG1	MULTI-MSMS	HCT116MG_D190212_S2	2	583.7671508789062	2	583.766906	1165.51926	0.69027	0.00040296	-0.59683	-0.00034841	0.093441	5.4548E-05	583.7665506842992	44.544	0.31433	44.459	44.325	44.639	-0.084801					11	5	3	0	0	0	0.17622	1	16945	16945		43.772	19.752	1	33355000			36422	971	23293	23414	35056	35056					-0.0568801807919499
VIERMNWMYFY	11	Unmodified	_VIERMNWMYFY_					0	0	0		B3GALNT1|p.V47M|1|0.45|ENSG00000169255|chr3:161086616-161086616|C/T|missense_variant	B3GALNT1|p.V47M|1|0.45|ENSG00000169255|chr3:161086616-161086616|C/T|missense_variant	B3GALNT1|p.V47M|1|0.45|ENSG00000169255|chr3:161086616-161086616|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	776.360107421875	2	776.35979	1550.70503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.358	1	54.169	53.669	54.669	-0.1894								0	0	0	0.95636	1	20926	20926		2.9952	0.26005	1				36423	243	23294	23415	35057	35057					-0.04829699946390065
VIETKKLI	8	Unmodified	_VIETKKLI_					0	0	0		tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	tr|U7T207|U7T207_FUSNUGlycerol-3-phosphatedehydrogenaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00422PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	472.3133850097656	2	472.312961	942.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.653	1	39.653	39.153	40.153	0								0	0	0	0.8837	1	14881	14881		10.183	0	1				36424	18562	23295	23416	35058	35058					0.13776692005137647
VIFDLPTTV	9	Unmodified	_VIFDLPTTV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	HCT116MG_D190212_S2	2	1004.56689453125	1	1004.56627	1003.559	0.65226	0.00065524	0.38099	0.00038273	1.0333	0.001038	1004.5668828188508	56.892	0.20896	56.713	56.635	56.844	-0.17904					5	3	2	0	0	0	0.2853	1	21986	21986		32.305	9.1571	1	17235000			36425	1028	23296	23417	35059	35059					0.0573610887150835
VIFGGQVI	8	Unmodified	_VIFGGQVI_					0	0	0		ENSG00000184860|ENST00000328945|SDR42E1	ENSG00000184860|ENST00000328945|SDR42E1	ENSG00000184860|ENST00000328945|SDR42E1	MULTI-SECPEP	HCT116MG_D190212_S1	1	416.20977783203125	2	416.749996	831.485439	-0.10666	-4.4449E-05	-0.25053	-0.00010441	-0.35718	-0.00014886	416.74991312552993	49.037	0.2079	49.037	48.871	49.079	0					5	3	2	0	0	0	0.33021	1	18623	18623		5.7604	0.52976	1	4994100			36426	5785	23297	23418	35060	35060					0.06295605219713707
VIFGTVIATA	10	Unmodified	_VIFGTVIATA_					0	0	0		nc|ENSG00000071967|Q53TN4-3|CYBRD1;ENSG00000071967|ENST00000321348|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	MULTI-MSMS	HCT116MG_D190212_S2	2	496.2947692871094	2	496.294768	990.574983	0.67706	0.00033602	0.19717	9.7855E-05	0.87424	0.00043388	496.2948365605358	43.609	0.25684	43.536	43.407	43.664	-0.073376					6	4	2	0	0	0	0.40515	1	16571	16571		41.84	4.765	1	18259000			36427	1260	23298	23419	35061	35061					0.07931815108429419
VIFLRRPGQGL	11	Unmodified	_VIFLRRPGQGL_					0	0	0		ENST00000398027.6_1_7:100004915-100013606:-|nuORF	ENST00000398027.6_1_7:100004915-100013606:-|nuORF	ENST00000398027.6_1_7:100004915-100013606:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	628.8869018554688	2	628.385314	1254.75608	0.6196	0.00038934	-0.13241	-8.3204E-05	0.48719	0.00030614	628.3851087935167	44.796	0.25949	44.796	44.621	44.88	0					10	4	3	0	0	0	0.65731	1	16952	16952		29.082	0	1	45095000			36428	7679	23299	23420	35062	35062					0.13888753204969362
VIFMIKKV	8	Unmodified	_VIFMIKKV_					0	0	0			REV__ENST00000378611.8_1_16:81095673-81097523:-|nuORF	REV__ENST00000378611.8_1_16:81095673-81097523:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	489.314453125	2	489.314449	976.614345	0.1163	5.6907E-05	0.095743	4.6848E-05	0.21204	0.00010376	489.3144219611941	51.833	2.2727	51.524	51.07	53.342	-0.30927					112	43	4	0	0	0	0.86388	1	19995	19995		2.8892	2.8892	1	355590000	+		36429	15249	23300	23421	35063	35063					0.1251024385828714
VIFMIKKV	8	Unmodified	_VIFMIKKV_					0	0	0			REV__ENST00000378611.8_1_16:81095673-81097523:-|nuORF	REV__ENST00000378611.8_1_16:81095673-81097523:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	489.314449	976.614345	0.1163	5.6907E-05	0.095743	4.6848E-05	0.21204	0.00010376	489.3144219611941	51.833	2.2727	51.524	51.07	53.342	-0.30927	0.015853	-5.1363E-05	NaN	2.8892	112	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355590000	+		36430	15249	23300	23421							0.1251024385828714
VIFVRRAG	8	Unmodified	_VIFVRRAG_					0	0	0			REV__DPYD|p.L523Sfs*13|1|0.32|ENSG00000188641|chr1:97515899-97515899|G/-|frameshift_variant	REV__DPYD|p.L523Sfs*13|1|0.32|ENSG00000188641|chr1:97515899-97515899|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	459.6275939941406	2	459.287611	916.56067	0.25274	0.00011608	-2.2	-0.0010104	-1.9472	-0.00089434	459.2868381441441	55.324	0.41689	55.006	54.719	55.136	-0.31774					9	7	2	0	0	0	0.33409	1	20661	20661		2.5775	1.976	1	1888300	+		36431	10408	23301	23422	35064	35064					0.09905207470796995
VIGFIFFIFF	10	Unmodified	_VIGFIFFIFF_					0	0	0			REV__CACNA1H|p.V240I|1|0.27|ENSG00000196557|chr16:1198689-1198689|G/A|missense_variant	REV__CACNA1H|p.V240I|1|0.27|ENSG00000196557|chr16:1198689-1198689|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	417.2393493652344	3	417.238844	1248.6947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.653	1	48.286	47.786	48.786	-0.36728								0	0	0	0.96291	1	18025	18025		0.77653	0	1		+		36432	10079	23302	23423	35065	35065					0.08030428452980232
VIGHYGNQ	8	Unmodified	_VIGHYGNQ_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MSMS	HCT116MG_D190212_S1	1	443.88848876953125	2	444.222134	886.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.542	1	31.542	31.042	32.042	0								0	0	0	0.8837	1	11609	11609		10.183	0	1		+		36433	11335	23303	23424	35066	35066					-0.018042279679093554
VIGTKNTA	8	Unmodified	_VIGTKNTA_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MSMS	HCT116MG_D190212_S4	4	402.23272705078125	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.513	1	30.149	29.649	30.649	-0.36416								0	0	0	0.8837	1	11048	11048		5.7604	0	1		+		36434	14024	23304	23425	35067	35067					0.045738268346440236
VIGVRIKKKD	10	Unmodified	_VIGVRIKKKD_					0	0	0			REV__tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1	REV__tr|U7SJK5|U7SJK5_FUSNUDUF2229domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02087PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	578.3829345703125	2	578.38224	1154.74993	0.48284	0.00027927	0.099754	5.7696E-05	0.58259	0.00033696	578.3821675309341	59.739	1.2307	59.579	59.285	60.516	-0.16012					44	24	3	0	0	0	0.88823	1	23324	23324		1.4819	0.28856	1	29777000	+		36435	17695	23305	23426	35068	35068					0.1787423497346481
VIGVTPPKPR	10	Unmodified	_VIGVTPPKPR_					0	0	0			REV__ENST00000565125.5_1_11:68658919-68659369:-|nuORF	REV__ENST00000565125.5_1_11:68658919-68659369:-|nuORF	MSMS	HCT116MG_D190212_S2	2	532.320068359375	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.011	1	49.848	49.348	50.348	-0.16369								0	0	0	0.93576	1	19157	19157		7.9102	1.187	1		+		36436	16530	23306	23427	35069	35069					0.12614301502276248
VIHAKKHNF	9	Unmodified	_VIHAKKHNF_					0	0	0			REV__ENSG00000205858|ENST00000401542|LRRC72	REV__ENSG00000205858|ENST00000401542|LRRC72	MULTI-MSMS	HCT116MG_D190212_S2	2	547.7900390625	2	547.3169	1092.61925	0.36519	0.00019987	-0.61361	-0.00033584	-0.24842	-0.00013597	547.316797531285	38.32	0.62925	38.227	37.96	38.589	-0.093006					16	11	3	0	0	0	0.59439	1	14503	14503		11.64	0.81637	1	32030000	+		36437	14235	23307	23428	35070	35070					0.07664264045274649
VIHATRRDIP	10	Unmodified	_VIHATRRDIP_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MSMS	HCT116MG_D190212_S4	4	589.3422241210938	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.756	1	49.394	48.894	49.894	-0.36213								0	0	0	0.94746	1	18466	18466		5.2969	1.3525	1				36438	6264	23308	23429	35071	35071					0.09147016757151505
VIHVRLLKTPQ	11	Unmodified	_VIHVRLLKTPQ_					0	0	0		ENST00000521433.1_1_8:89341227-89721666:+|nuORF	ENST00000521433.1_1_8:89341227-89721666:+|nuORF	ENST00000521433.1_1_8:89341227-89721666:+|nuORF	MSMS	HCT116MG_D190212_S4	4	652.4112548828125	2	652.414072	1302.81359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.794	1	58.511	58.011	59.011	-0.28305								0	0	0	0.95636	1	22108	22108		2.9952	0	1				36439	8557	23309	23430	35072	35072					0.17429595410567345
VIIEQSWG	8	Unmodified	_VIIEQSWG_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1;ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	HCT116MG_D190212_S1	1	466.7513427734375	2	466.247818	930.481082	0.11485	5.3547E-05	1.733	0.00080799	1.8478	0.00086153	466.2497014545619	61.632	1.9156	61.632	61.004	62.92	0					126	36	4	0	0	0	0.86564	1	24221	24221		2.5775	0	1	11704000			36440	3862;7590	23310	23431	35073	35073					0.013060960061466176
VIIEQSWG	8	Unmodified	_VIIEQSWG_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;HSPD1|p.G441Vfs*14|1|0.04|ENSG00000144381|chr2:197488385-197488385|C/-|frameshift_variant;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1;ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	466.247818	930.481082	0.271	0.00012635	2.6208	0.001222	2.8918	0.0013483	466.2497092688305	61.461	1.8385	61.319	60.637	62.475	-0.14227	-0.15664	0.00035142	NaN	2.5775	96	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7710300			36441	3862;7590	23310	23431							0.013060960061466176
VIIFMPLL	8	Unmodified	_VIIFMPLL_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	MSMS	HCT116MG_D190212_S1	1	473.2956237792969	2	473.295725	944.576897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.534	1	41.534	41.034	42.034	0								0	0	0	0.8837	1	15641	15641		11.114	0	1		+		36442	14145	23311	23432	35074	35074					0.10239152592680512
VIIPIPLAIVL	11	Unmodified	_VIIPIPLAIVL_					0	0	0			REV__ENSG00000158445|ENST00000371741|KCNB1	REV__ENSG00000158445|ENST00000371741|KCNB1	MSMS	HCT116MG_D190212_S1	1	580.9050903320312	2	580.904485	1159.79442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.009	1	11.009	10.509	11.509	0								0	0	0	0.96208	1	3427	3427		0	0	1		+		36443	12783	23312	23433	35075	35075					0.2209124606692967
VIKAAYNQVKT	11	Unmodified	_VIKAAYNQVKT_					0	0	0		ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2	ENST00000563711.5_1_16:21973998-21987565:+|nuORF	ENST00000563711.5_1_16:21973998-21987565:+|nuORF	MSMS	HCT116MG_D190212_S4	4	412.2442626953125	3	412.243317	1233.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.3	1	41.924	41.424	42.424	-0.37565								0	0	0	0.95976	1	15541	15541		1.2148	0.4383	1				36444	3684	23313	23434	35076	35076					0.10061634494263672
VIKLVLAIV	9	Unmodified	_VIKLVLAIV_					0	0	0			REV__ENST00000396068.6_2_7:36459883-36460258:+|nuORF	REV__ENST00000396068.6_2_7:36459883-36460258:+|nuORF	MSMS	HCT116MG_D190212_S4	4	484.3480529785156	2	484.349346	966.684139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.007	1	61.753	61.253	62.253	-0.25457								0	0	0	0.77008	1	23407	23407		0.6015	0	1		+		36445	15351	23314	23435	35077	35077					0.1994644579854139
VIKRACII	8	Unmodified	_VIKRACII_					0	0	0			REV__ENSG00000120563|ENST00000649382|LYZL1	REV__ENSG00000120563|ENST00000649382|LYZL1	MSMS	HCT116MG_D190212_S1	1	458.2955322265625	2	458.294048	914.573543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.298	1	51.298	50.798	51.798	0								0	0	0	0.8837	1	19595	19595		6.3541	0.59368	1		+		36446	11693	23315	23436	35078	35078					0.11283902538662005
VIKTPVVK	8	Unmodified	_VIKTPVVK_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MSMS	HCT116MG_D190212_S2	2	442.301025390625	2	442.302396	882.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.625	1	58.457	57.957	58.957	-0.16732								0	0	0	0.8837	1	22662	22662		0.52476	0	1				36447	3241	23316	23437	35079	35079					0.14424726696267953
VIKVKDVKILE	11	Unmodified	_VIKVKDVKILE_					0	0	0			REV__ENST00000267869.8_1_15:59931333-59949661:-|nuORF	REV__ENST00000267869.8_1_15:59931333-59949661:-|nuORF	MSMS	HCT116MG_D190212_S3	3	642.4188232421875	2	642.418488	1282.82242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.409	1	55.117	54.617	55.617	-0.2918								0	0	0	0.95023	1	21017	21017		6.2058	0	1		+		36448	12289	23317	23438	35080	35080					0.19232524256381112
VILAIALRLRR	11	Unmodified	_VILAIALRLRR_					0	0	0		nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000253305|ENST00000520790|PCDHGB6;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1;ENSG00000254221|ENST00000523390|PCDHGB1	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1	nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MSMS	HCT116MG_D190212_S1	1	431.9652099609375	3	431.96623	1292.87686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.08	1	11.08	10.58	11.58	0								0	0	0	0.96208	1	3455	3455		0	0	1				36449	6584;6595	23318	23439	35081	35081					0.2421358091842194
VILAPDLSLH	10	Unmodified	_VILAPDLSLH_					0	0	0			REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	539.3192138671875	2	539.318774	1076.623	0.48424	0.00026116	0.30273	0.00016327	0.78696	0.00042442	539.3188644809753	55.334	0.20336	55.146	55.019	55.222	-0.18797					5	3	2	0	0	0	0.74117	1	21353	21353		16.942	9.0321	1	46042000	+		36450	14747	23319	23440	35082	35082					0.08774889028472899
VILEVIYTDP	10	Unmodified	_VILEVIYTDP_					0	0	0		ENST00000486074.2_1_10:60966594-61005348:+|nuORF;nc|ENSG00000165443|Q96FC7-2|PHYHIPL;ENSG00000165443|ENST00000373880|PHYHIPL	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	MSMS	HCT116MG_D190212_S2	2	581.3212890625	2	581.323722	1160.63289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.564	1	25.195	24.695	25.695	-0.36914								0	0	0	0.91906	1	9211	9211		11.64	0.81637	1				36451	4774	23320	23441	35083	35083					0.05900032243175701
VILIYDGKEK	10	Unmodified	_VILIYDGKEK_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	HCT116MG_D190212_S4	4	589.4669189453125	2	589.344989	1176.67542	0.63838	0.00037622	-1.7427	-0.001027	-1.1043	-0.00065082	589.8459047357339	52.131	0.8818	51.785	51.623	52.504	-0.34538					19	16	2	0	0	0	0.80632	1	19363	19363		11.495	0.67078	1	3523100	+		36452	11878	23321	23442	35084	35084					0.09415427371436635
VILKLLLKYS	10	Unmodified	_VILKLLLKYS_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	397.2702941894531	3	397.268804	1188.78458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.236	1	58.066	57.566	58.566	-0.1703								0	0	0	0.96836	1	22502	22502		0.62683	0.12087	1				36453	5305	23322	23443	35085	35085					0.19774058061580035
VILLSTTVLE	10	Unmodified	_VILLSTTVLE_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MSMS	HCT116MG_D190212_S1	1	544.3343505859375	2	544.33409	1086.65363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.803	1	46.803	46.303	47.303	0								0	0	0	0.92607	1	17767	17767		10.074	0	1				36454	3719	23323	23444	35086	35086					0.11376622622810828
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENST00000487662.1_1_3:57643405-57651906:-|nuORF;DENND6A|p.A359Cfs*2|1|0.27|ENSG00000174839|chr3:57641710-57641711|-/A|frameshift_variant;DENND6A|p.L441Wfs*3|2|0.26|ENSG00000174839|chr3:57633296-57633296|A/-|frameshift_variant;ENSG00000174839|ENST00000311128|DENND6A	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	MSMS	HCT116MG_D190212_S1	1	503.8003234863281	2	503.800217	1005.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.357	1	43.357	42.857	43.857	0								0	0	0	0.1044	1	16377	16377		54.774	16.622	1				36455	663	23324	23445	35087	35087					0.08331217482714237
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENST00000487662.1_1_3:57643405-57651906:-|nuORF;DENND6A|p.A359Cfs*2|1|0.27|ENSG00000174839|chr3:57641710-57641711|-/A|frameshift_variant;DENND6A|p.L441Wfs*3|2|0.26|ENSG00000174839|chr3:57633296-57633296|A/-|frameshift_variant;ENSG00000174839|ENST00000311128|DENND6A	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	503.8002624511719	2	503.800217	1005.58588	0.16856	8.4922E-05	-0.16693	-8.4098E-05	0.0016346	8.2351E-07	503.8001084939383	43.381	0.4646	43.308	43.045	43.51	-0.073376					18	8	3	0	0	0	0.035914	1	16437	16437		81.613	33.267	1	40085000			36456	663	23324	23445	35088	35088					0.08331217482714237
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENST00000487662.1_1_3:57643405-57651906:-|nuORF;DENND6A|p.A359Cfs*2|1|0.27|ENSG00000174839|chr3:57641710-57641711|-/A|frameshift_variant;DENND6A|p.L441Wfs*3|2|0.26|ENSG00000174839|chr3:57633296-57633296|A/-|frameshift_variant;ENSG00000174839|ENST00000311128|DENND6A	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	503.3062438964844	2	503.800217	1005.58588	0.42229	0.00021275	-1.12	-0.00056426	-0.69771	-0.00035151	503.8000746591624	43.572	0.46876	43.266	43.032	43.5	-0.30616					9	8	2	0	0	0	0.22781	1	16288	16288		16.942	9.0321	1	4762700			36457	663	23324	23445	35089	35089					0.08331217482714237
VILSWMLL	8	Unmodified	_VILSWMLL_					0	0	0			REV__ENST00000491948.5_1_22:24200072-24210829:+|nuORF	REV__ENST00000491948.5_1_22:24200072-24210829:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	487.7908630371094	2	487.790807	973.56706	-0.077628	-3.7866E-05	0.34981	0.00017064	0.27219	0.00013277	487.7908726067295	53.187	0.93694	52.853	52.359	53.296	-0.33473					20	17	2	0	0	0	0.84759	1	19932	19932		5.7604	0	1	3857300	+		36458	12033	23325	23446	35090	35090					0.07921964587308139
VILWILVLF	9	Unmodified	_VILWILVLF_					0	0	0		tr|U7T3T9|U7T3T9_FUSNUBbox-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00258PE=4SV=1	tr|U7T3T9|U7T3T9_FUSNUBbox-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00258PE=4SV=1	tr|U7T3T9|U7T3T9_FUSNUBbox-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00258PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	558.3657836914062	2	558.364996	1114.71544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.394	1	49.078	48.578	49.578	-0.31596								0	0	0	0.7676	1	18599	18599		9.3474	4.1168	1				36459	18608	23326	23447	35091	35091					0.162670188326274
VIMIIITVF	9	Unmodified	_VIMIIITVF_					0	0	0			REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	REV__tr|U7SSZ7|U7SSZ7_FUSNUMFStransporter,AGZAfamily,xanthine/uracilpermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01653PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2607421875	2	524.827389	1047.64023	0.40967	0.00021501	-0.058874	-3.0899E-05	0.3508	0.00018411	524.8272351298549	53.685	0.88675	53.386	53.039	53.925	-0.29946					45	16	4	0	0	0	0.7005	1	20461	20461		5.2307	0	1	17542000	+		36460	17783	23327	23448	35092	35092					0.11831093309911012
VIMLLLHI	8	Unmodified	_VIMLLLHI_					0	0	0		ENST00000508878.5_1_5:127359968-127417754:-|nuORF	ENST00000508878.5_1_5:127359968-127417754:-|nuORF	ENST00000508878.5_1_5:127359968-127417754:-|nuORF	MSMS	HCT116MG_D190212_S3	3	476.3074035644531	2	476.306624	950.598695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.678	1	51.366	50.866	51.866	-0.31118								0	0	0	0.8837	1	19517	19517		11.114	0	1				36461	8482	23328	23449	35093	35093					0.12141957341236775
VINKYQGKLF	10	Unmodified	_VINKYQGKLF_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MSMS	HCT116MG_D190212_S1	1	605.4288940429688	2	605.353148	1208.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.883	1	24.883	24.383	25.383	0								0	0	0	0.92607	1	8927	8927		10.074	1.3285	1				36462	2408	23329	23450	35094	35094					0.09574553328161528
VINLDRIH	8	Unmodified	_VINLDRIH_					0	0	0			REV__ENST00000474535.2_1_2:38545640-38570535:-|nuORF	REV__ENST00000474535.2_1_2:38545640-38570535:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	490.28790283203125	2	490.287808	978.561064	0.42208	0.00020694	-1.3811	-0.00067713	-0.959	-0.00047018	490.286760817681	34.871	0.3118	34.871	34.753	35.064	0					10	5	3	0	0	0	0.7524	1	12987	12987		16.942	0	1	5604000	+		36463	11672	23330	23451	35095	35095					0.07092582399980074
VINMSLAEVY	10	Unmodified	_VINMSLAEVY_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MSMS	HCT116MG_D190212_S2	2	569.3687133789062	2	569.794275	1137.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.218	1	51.039	50.539	51.539	-0.17868								0	0	0	0.91906	1	19646	19646		11.64	0.81637	1		+		36464	11630	23331	23452	35096	35096					0.01071232677190892
VINRIQKLRK	10	Unmodified	_VINRIQKLRK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	634.4188232421875	2	634.419688	1266.82482	0.5996	0.0003804	-1.8941	-0.0012017	-1.2945	-0.00082126	634.4185633636959	58.236	0.13894	58.236	58.173	58.312	0					4	2	2	0	0	0	0.89272	1	22458	22458		0.40072	0	1	55238000			36465	6058	23332	23453	35097	35097					0.20208417504659337
VINTNKLVRGP	11	Unmodified	_VINTNKLVRGP_					0	0	0			REV__PIWIL3|p.A475T|1|0.33|ENSG00000184571|chr22:24748933-24748933|C/T|missense_variant	REV__PIWIL3|p.A475T|1|0.33|ENSG00000184571|chr22:24748933-24748933|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	605.8670654296875	2	605.866954	1209.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.628	1	48.312	47.812	48.812	-0.31596								0	0	0	0.95636	1	18295	18295		2.9952	0.26005	1		+		36466	17423	23333	23454	35098	35098					0.12288456588407826
VIPKSENSSQ	10	Unmodified	_VIPKSENSSQ_					0	0	0		ENST00000545200.5_1_12:6666161-6669478:-|nuORF;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	ENST00000545200.5_1_12:6666161-6669478:-|nuORF	ENST00000545200.5_1_12:6666161-6669478:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	544.7828369140625	2	544.782753	1087.55095	0.44387	0.00024181	-0.030893	-1.683E-05	0.41298	0.00022498	544.782677827822	19.73	0.20903	19.73	19.6	19.809	0					5	3	2	0	0	0	0.49415	1	6887	6887		35.612	7.1177	1	3131500			36467	2301	23334	23455	35099	35099					0.010679298841068885
VIPLKWPK	8	Unmodified	_VIPLKWPK_					0	0	0		SLC6A19|p.P451L|1|0.36|ENSG00000174358|chr5:1219081-1219081|C/T|missense_variant	SLC6A19|p.P451L|1|0.36|ENSG00000174358|chr5:1219081-1219081|C/T|missense_variant	SLC6A19|p.P451L|1|0.36|ENSG00000174358|chr5:1219081-1219081|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	490.2953796386719	2	490.818213	979.621873	0.24121	0.00011839	0.62949	0.00030897	0.8707	0.00042736	490.818470720424	50.97	0.31086	50.791	50.655	50.966	-0.17868					9	5	2	0	0	0	0.33021	1	19597	19597		5.7604	0.52976	1	35743000			36468	18169	23335	23456	35100	35100					0.1312471945021798
VIPRHGLQ	8	Unmodified	_VIPRHGLQ_					0	0	0		nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	MSMS	HCT116MG_D190212_S1	1	460.2843017578125	2	460.277244	918.539935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.494	1	32.494	31.994	32.994	0								0	0	0	0.8837	1	11993	11993		9.3474	0	1				36469	9675	23336	23457	35101	35101					0.07740617091121749
VIQDGEKV	8	Unmodified	_VIQDGEKV_					0	0	0			REV__nc|ENSG00000124942|Q09666-2|AHNAK	REV__nc|ENSG00000124942|Q09666-2|AHNAK	MSMS	HCT116MG_D190212_S1	1	444.24444580078125	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.59	1	27.59	27.09	28.09	0								0	0	0	0.8837	1	10018	10018		13.508	0	1		+		36470	9898	23337	23458	35102	35102					0.02821792143527091
VIRHLSIHPP	10	Unmodified	_VIRHLSIHPP_					0	0	0			REV__ENSG00000100558|ENST00000216446|PLEK2	REV__ENSG00000100558|ENST00000216446|PLEK2	MSMS	HCT116MG_D190212_S1	1	584.8523559570312	2	584.851107	1167.68766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.168	1	14.168	13.668	14.668	0								0	0	0	0.96911	1	4622	4622		0.45834	0	1		+		36471	11093	23338	23459	35103	35103					0.11052508625130031
VIRIKIKRFIK	11	Unmodified	_VIRIKIKRFIK_					0	0	0			REV__HELLS|p.K156Rfs*27|1|0.04|ENSG00000119969|chr10:94571415-94571415|A/-|frameshift_variant	REV__HELLS|p.K156Rfs*27|1|0.04|ENSG00000119969|chr10:94571415-94571415|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	707.4955444335938	2	707.492656	1412.97076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.305	1	61.163	60.663	61.663	-0.14227								0	0	0	0.96208	1	23743	23743		0	0	1		+		36472	16873	23339	23460	35104	35104					0.28079300020726805
VIRKELKKRRI	11	Unmodified	_VIRKELKKRRI_					0	0	0		tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	tr|U7SU53|U7SU53_FUSNUTHIF-typeNAD/FADbindingfolddomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01310PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	480.32806396484375	3	480.327938	1437.96199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.089	1	24.089	23.589	24.589	0								0	0	0	0.9619	1	8608	8608		0.094841	0	1				36473	18464	23340	23461	35105	35105					0.260523263842515
VIRKLKKTR	9	Unmodified	_VIRKLKKTR_					0	0	0			REV__tr|U7T2Z5|U7T2Z5_FUSNUAdenylate-formingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00518PE=4SV=1	REV__tr|U7T2Z5|U7T2Z5_FUSNUAdenylate-formingenzymeOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00518PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	381.267333984375	3	381.267909	1140.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.701	1	59.701	59.201	60.201	0								0	0	0	0.77025	1	23009	23009		0	0	1		+		36474	17936	23341	23462	35106	35106					0.2171364744724542
VITETVVEV	9	Unmodified	_VITETVVEV_					0	0	0		ENST00000514606.1_1_4:139988805-140005344:-|nuORF;nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2	ENST00000514606.1_1_4:139988805-140005344:-|nuORF	ENST00000514606.1_1_4:139988805-140005344:-|nuORF	MSMS	HCT116MG_D190212_S1	1	494.7965393066406	2	494.78169	987.548827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.572	1	45.572	45.072	46.072	0								0	0	0	0.27276	1	17270	17270		42.095	13.608	1				36475	2204	23342	23463	35107	35107					0.054555011462980474
VITGDPMI	8	Unmodified	_VITGDPMI_					0	0	0			REV__ENST00000525598.1_1_11:118982915-118984090:+|nuORF	REV__ENST00000525598.1_1_11:118982915-118984090:+|nuORF	MSMS	HCT116MG_D190212_S2	2	423.2239990234375	2	423.225497	844.43644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.173	1	43.1	42.6	43.6	-0.073376								0	0	0	0.8837	1	16362	16362		10.183	0.83596	1		+		36476	13385	23343	23464	35108	35108					0.007999488684617972
VITLKYKF	8	Unmodified	_VITLKYKF_					0	0	0			REV__GRIA2|p.F552Lfs*8|2|0.36|ENSG00000120251|chr4:157336555-157336555|T/-|frameshift_variant	REV__GRIA2|p.F552Lfs*8|2|0.36|ENSG00000120251|chr4:157336555-157336555|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	506.3172302246094	2	506.315503	1010.61645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.343	1	33.343	32.843	33.843	0								0	0	0	0.8837	1	12336	12336		5.7604	0.52976	1		+		36477	11690	23344	23465	35109	35109					0.1115699586774781
VITTFTLQPQ	10	Unmodified	_VITTFTLQPQ_					0	0	0		ENST00000466266.6_1_9:79228267-79307072:-|nuORF	ENST00000466266.6_1_9:79228267-79307072:-|nuORF	ENST00000466266.6_1_9:79228267-79307072:-|nuORF	MSMS	HCT116MG_D190212_S4	4	574.3192749023438	2	574.321514	1146.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.259	1	29.902	29.402	30.402	-0.3571								0	0	0	0.92917	1	10962	10962		9.3831	0.63772	1				36478	8106	23345	23466	35110	35110					0.061025678202895506
VITVKNLRMAI	11	Unmodified	_VITVKNLRMAI_					0	0	0		ENST00000452340.7_1_14:77746025-77787024:-|nuORF;ENSG00000009830|ENST00000261534|POMT2	ENST00000452340.7_1_14:77746025-77787024:-|nuORF	ENST00000452340.7_1_14:77746025-77787024:-|nuORF	MSMS	HCT116MG_D190212_S2	2	629.3866577148438	2	629.389208	1256.76386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.807	1	46.696	46.196	47.196	-0.11121								0	0	0	0.93552	1	17839	17839		13.906	0.86358	1				36479	872	23346	23467	35111	35111					0.1457514441026433
VIVNEDGRNK	10	Unmodified	_VIVNEDGRNK_					0	0	0		LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant;nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1	LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant	LONRF1|p.I553Nfs*3|2|0.18|ENSG00000154359|chr8:12731766-12731767|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	381.8748779296875	3	381.875405	1142.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.49674	1	0.49674	-0.0032608	0.99674	0								0	0	0	0.96804	1	150	150		0.69767	0.29695	1				36480	4216	23347	23468	35112	35112					0.03878727386609171
VIWGTDVNV	9	Unmodified	_VIWGTDVNV_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	501.76580810546875	2	501.766374	1001.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.77	1	51.77	51.27	52.27	0								0	0	0	0.53872	1	19788	19788		26.884	5.137	1				36481	1949	23348	23469	35113	35113					0.017497675518939104
VIWGTDVNV	9	Unmodified	_VIWGTDVNV_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1002.525390625	1	1002.52547	1001.5182	0.72537	0.0007272	0.11423	0.00011452	0.8396	0.00084172	1002.5254927243959	51.941	0.30918	51.758	51.629	51.938	-0.18369					9	5	2	0	0	0	0.019399	1	19967	19967		97.075	42.301	1	23829000			36482	1949	23348	23469	35114	35114					0.017497675518939104
VIWGTDVNV	9	Unmodified	_VIWGTDVNV_					0	0	0		MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant;ENSG00000104738|ENST00000649973|MCM4	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MCM4|p.T629Qfs*18|2|0.31|ENSG00000104738|chr8:47971419-47971419|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	501.7669677734375	2	501.766374	1001.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.024	1	51.84	51.34	52.34	-0.18369								0	0	0	0.01641	1	19975	19975		97.075	39.603	1				36483	1949	23348	23469	35115	35115					0.017497675518939104
VIWWQRVYVFP	11	Unmodified	_VIWWQRVYVFP_					0	0	0		ENSG00000131055|ENST00000376075|COX4I2	ENSG00000131055|ENST00000376075|COX4I2	ENSG00000131055|ENST00000376075|COX4I2	MULTI-MSMS	HCT116MG_D190212_S1	1	498.61016845703125	3	498.27484	1491.80269	0.46274	0.00023057	0.8493	0.00042319	1.312	0.00065376	498.27500479354313	34.866	0.41302	34.866	34.701	35.114	0					14	7	3	0	0	0	0.72055	1	12961	12961		14.218	4.4539	1	46802000			36484	3124	23349	23470	35116	35116					0.07646193036271143
VIWWQRVYVFP	11	Unmodified	_VIWWQRVYVFP_					0	0	0		ENSG00000131055|ENST00000376075|COX4I2	ENSG00000131055|ENST00000376075|COX4I2	ENSG00000131055|ENST00000376075|COX4I2	MULTI-MSMS	HCT116MG_D190212_S2	2	498.6099548339844	3	498.27484	1491.80269	0.49612	0.00024721	0.78999	0.00039363	1.2861	0.00064084	498.2750306580692	34.842	0.57016	34.683	34.502	35.072	-0.15834					17	10	3	0	0	0	0.71068	1	12999	12999		17.863	1.5886	1	223500000			36485	3124	23349	23470	35117	35117					0.07646193036271143
VIWWQRVYVFP	11	Unmodified	_VIWWQRVYVFP_					0	0	0		ENSG00000131055|ENST00000376075|COX4I2	ENSG00000131055|ENST00000376075|COX4I2	ENSG00000131055|ENST00000376075|COX4I2	MULTI-MSMS	HCT116MG_D190212_S2	2	373.9582824707031	4	373.957949	1491.80269	-0.075018	-2.8053E-05	1.2512	0.0004679	1.1762	0.00043984	373.95836662234575	34.894	0.2074	34.735	34.606	34.813	-0.15834					7	3	3	0	0	0	0.7388	1	13020	13020		7.4771	5.2243	1	31558000			36486	3124	23349	23470	35118	35118					0.07646193036271143
VIYLWWFLLI	10	Unmodified	_VIYLWWFLLI_					0	0	0			REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	REV__tr|U7SMC2|U7SMC2_FUSNUN-acetyl-D-galactosaminetransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01949PE=3SV=1	MULTI-SECPEP	HCT116MG_D190212_S1	1	683.012451171875	2	683.40211	1364.78967	0.84626	0.00057833	-2.3993	-0.0016397	-1.5531	-0.0010614	683.9021984245278	54.764	0.20309	54.764	54.637	54.841	0					5	3	2	0	0	0	0.31093	1	21007	21007		4.3292	2.0465	1	30392000	+		36487	17724	23350	23471	35119	35119					0.12186361924182165
VKAKKKKKKKK	11	Unmodified	_VKAKKKKKKKK_					0	0	0		ENSG00000189134|ENST00000343684|NKAPL	ENSG00000189134|ENST00000343684|NKAPL	ENSG00000189134|ENST00000343684|NKAPL	MSMS	HCT116MG_D190212_S3	3	671.3079223632812	2	671.492656	1340.97076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.608	1	51.297	50.797	51.797	-0.31166								0	0	0	0.96208	1	19490	19490		0	0	1				36488	6022	23351	23472	35120	35120					0.31391300020709423
VKAKTPSGPGD	11	Unmodified	_VKAKTPSGPGD_					0	0	0			REV__PCDHGA7|p.L328P|1|0.21|ENSG00000253537|chr5:141383882-141383882|T/C|missense_variant	REV__PCDHGA7|p.L328P|1|0.21|ENSG00000253537|chr5:141383882-141383882|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.2509155273438	2	528.787838	1055.56112	0.44531	0.00023548	2.3104	0.0012217	2.7557	0.0014572	529.2891705215106	46.387	0.25843	46.276	46.11	46.369	-0.11121					10	4	3	0	0	0	0.35748	1	17645	17645		12.241	6.0349	1	15281000	+		36489	17396	23352	23473	35121	35121					0.03556537609347288
VKAKTTKKR	9	Unmodified	_VKAKTTKKR_					0	0	0		MYL9|p.A6V|1|0.11|ENSG00000101335|chr20:36544901-36544901|C/T|missense_variant	MYL9|p.A6V|1|0.11|ENSG00000101335|chr20:36544901-36544901|C/T|missense_variant	MYL9|p.A6V|1|0.11|ENSG00000101335|chr20:36544901-36544901|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	530.3526611328125	2	530.353483	1058.69241	0.21679	0.00011498	-0.39174	-0.00020776	-0.17495	-9.2785E-05	530.353164886667	60.723	0.92562	60.723	60.595	61.521	0					21	17	2	0	0	0	0.74607	1	23438	23438		2.0598	0.40713	1	51147000			36490	9351	23353	23474	35122	35122					0.16541392767885554
VKALITTVFV	10	Unmodified	_VKALITTVFV_					0	0	0		ZNF124|p.M351Nfs*28|1|0.29|ENSG00000196418|chr1:247156570-247156571|-/T|frameshift_variant	ZNF124|p.M351Nfs*28|1|0.29|ENSG00000196418|chr1:247156570-247156571|-/T|frameshift_variant	ZNF124|p.M351Nfs*28|1|0.29|ENSG00000196418|chr1:247156570-247156571|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	364.23272705078125	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.615	1	36.615	36.115	37.115	0								0	0	0	0.96183	1	13654	13654		2.086	0.89267	1				36491	18717	23354	23475	35123	35123					0.13852936584976305
VKARSGLP	8	Unmodified	_VKARSGLP_					0	0	0		RTN1|p.P392L|2|0.35|ENSG00000139970|chr14:59727509-59727509|G/A|missense_variant	RTN1|p.P392L|2|0.35|ENSG00000139970|chr14:59727509-59727509|G/A|missense_variant	RTN1|p.P392L|2|0.35|ENSG00000139970|chr14:59727509-59727509|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	414.2598571777344	2	414.25852	826.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.839	1	27.839	27.339	28.339	0								0	0	0	0.8837	1	10118	10118		5.7604	0	1				36492	18130	23355	23476	35124	35124					0.08229525825527162
VKCKLLIKVN	10	Unmodified	_VKCKLLIKVN_					0	0	0			REV__ENST00000433656.2_1_9:98637373-98637469:-|nuORF	REV__ENST00000433656.2_1_9:98637373-98637469:-|nuORF	MSMS	HCT116MG_D190212_S1	1	579.3737182617188	2	579.375569	1156.73659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.97	1	61.97	61.47	62.47	0								0	0	0	0.95507	1	23920	23920		3.5965	1.7523	1		+		36493	15599	23356	23477	35125	35125					0.1644866086987804
VKCKQLKG	8	Unmodified	_VKCKQLKG_					0	0	0			REV__ENST00000429864.1_1_X:127575186-127575687:+|nuORF	REV__ENST00000429864.1_1_X:127575186-127575687:+|nuORF	MSMS	HCT116MG_D190212_S4	4	452.27734375	2	452.275855	902.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.59	1	44.217	43.717	44.717	-0.37326								0	0	0	0.8837	1	16433	16433		4.756	0	1		+		36494	15576	23357	23478	35126	35126					0.08199025641965818
VKDRIDRE	8	Unmodified	_VKDRIDRE_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-MSMS	HCT116MG_D190212_S1	1	515.787841796875	2	515.78563	1029.55671	0.33587	0.00017323	0.21347	0.00011011	0.54934	0.00028334	515.7855508579604	23.549	0.41756	23.549	23.21	23.627	0					15	7	4	0	0	0	0.67912	1	8339	8339		25.399	25.399	1	38785000			36495	6594	23358	23479	35127	35127					0.04311073186431713
VKDVNKLSLPV	11	Unmodified	_VKDVNKLSLPV_					0	0	0			REV__nc|ENSG00000097021|O00154-3|ACOT7	REV__nc|ENSG00000097021|O00154-3|ACOT7	MSMS	HCT116MG_D190212_S3	3	606.8350219726562	2	606.371538	1210.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.808	1	44.499	43.999	44.999	-0.30927								0	0	0	0.94755	1	16759	16759		7.609	1.8771	1		+		36496	17093	23359	23480	35128	35128					0.13158805154080255
VKEEKKVVA	9	Unmodified	_VKEEKKVVA_					0	0	0			REV__nc|ENSG00000122025|P36888-2|FLT3	REV__nc|ENSG00000122025|P36888-2|FLT3	MULTI-MSMS	HCT116MG_D190212_S2	2	515.3187255859375	2	515.318774	1028.623	0.2131	0.00010982	-0.24896	-0.0001283	-0.035862	-1.848E-05	515.3186309225325	19.544	0.20736	19.174	19.044	19.252	-0.3695					5	3	2	0	0	0	0.39784	1	6809	6809		22.736	3.3743	1	15962000	+		36497	11725	23360	23481	35129	35129					0.1098288902846889
VKEEKKVVA	9	Unmodified	_VKEEKKVVA_					0	0	0			REV__nc|ENSG00000122025|P36888-2|FLT3	REV__nc|ENSG00000122025|P36888-2|FLT3	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	515.318774	1028.623	0.2131	0.00010982	-0.24896	-0.0001283	-0.035862	-1.848E-05	515.3186309225325	19.544	0.20736	19.174	19.044	19.252	-0.3695	0	0	NaN	22.736	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15962000	+		36498	11725	23360	23481							0.1098288902846889
VKEVEQTNL	9	Unmodified	_VKEVEQTNL_					0	0	0			REV__nc|ENSG00000138640|O94988-3|FAM13A	REV__nc|ENSG00000138640|O94988-3|FAM13A	MULTI-SECPEP	HCT116MG_D190212_S3	3	353.52679443359375	3	353.860873	1058.56079	-0.007575	-2.6805E-06	1.3865	0.00049062	1.3789	0.00048794	353.86130183004747	26.69	0.26006	26.541	26.359	26.619	-0.14924					7	4	2	0	0	0	0.2458	1	9587	9587		8.9762	0.53194	1	11197000	+		36499	12232	23361	23482	35130	35130					0.03385117889456524
VKIHLKVLE	9	Unmodified	_VKIHLKVLE_					0	0	0		GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant	GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant	GPR149|p.E620K|1|0.19|ENSG00000174948|chr3:154338037-154338037|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	360.2379455566406	3	360.237615	1077.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.793	1	60.528	60.028	61.028	-0.26582								0	0	0	0.77018	1	22916	22916		0.26902	0	1				36500	9191	23362	23483	35131	35131					0.15527758679127146
VKIKKTKIKL	10	Unmodified	_VKIKKTKIKL_					0	0	0			REV__PCDHA12|p.D187Ifs*8|2|0.33|ENSG00000251664|chr5:140876024-140876024|A/-|frameshift_variant	REV__PCDHA12|p.D187Ifs*8|2|0.33|ENSG00000251664|chr5:140876024-140876024|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	400.2903747558594	3	400.291831	1197.85366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.06	1	46.06	45.56	46.56	0								0	0	0	0.97045	1	17465	17465		0.15932	0	1		+		36501	17387	23363	23484	35132	35132					0.26265142081092563
VKIKLKIKLIL	11	Unmodified	_VKIKLKIKLIL_					0	0	0		METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant	METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant	METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	654.9913330078125	2	654.988884	1307.96321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.624	1	48.624	48.124	49.124	0								0	0	0	0.96208	1	18507	18507		0	0	1				36502	9329	23364	23485	35133	35133					0.3215514770045047
VKIKLKIKLIL	11	Unmodified	_VKIKLKIKLIL_					0	0	0		METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant	METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant	METTL25|p.Q249Kfs*37|1|0.58|ENSG00000127720|chr12:82399008-82399008|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	654.8920288085938	2	654.988884	1307.96321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.905	1	38.82	38.32	39.32	-0.084618								0	0	0	0.96208	1	14626	14626		0	0	1				36503	9329	23364	23485	35134	35134					0.3215514770045047
VKIMPFQDPC	10	Unmodified	_VKIMPFQDPC_					0	0	0			REV__ENST00000491016.1_1_22:29706398-29706989:+|nuORF	REV__ENST00000491016.1_1_22:29706398-29706989:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	589.338134765625	2	589.290845	1176.56714	0.95194	0.00056097	-4.1572	-0.0024498	-3.2052	-0.0018888	589.2903405047597	43.711	0.15397	43.633	43.505	43.659	-0.078373					4	2	2	0	0	0	0.30526	1	16567	16567		10.074	5.7447	1	7086600	+		36504	13843	23365	23486	35135	35135					-0.01408403475011255
VKIRPPISAM	10	Unmodified	_VKIRPPISAM_					0	0	0			REV__ENSG00000117036|ENST00000368192|ETV3	REV__ENSG00000117036|ENST00000368192|ETV3	MSMS	HCT116MG_D190212_S3	3	371.2274475097656	3	371.226722	1110.65834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.628	1	45.317	44.817	45.817	-0.31094								0	0	0	0.96769	1	17089	17089		0.77653	0.50751	1		+		36505	11606	23366	23487	35136	35136					0.10743228284627548
VKIRRRRNMSF	11	Unmodified	_VKIRRRRNMSF_					0	0	0		ENST00000296252.8_1_3:185252700-185270227:-|nuORF	ENST00000296252.8_1_3:185252700-185270227:-|nuORF	ENST00000296252.8_1_3:185252700-185270227:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	731.9296264648438	2	731.930429	1461.8463	0.47099	0.00034473	-0.77331	-0.00056601	-0.30233	-0.00022128	731.9294997855427	49.27	0.2629	48.954	48.816	49.079	-0.31596					8	4	3	0	0	0	0.74191	1	18578	18578		11.495	6.9658	1	4800600			36506	6981	23367	23488	35137	35137					0.13385479261751243
VKIVDEIRH	9	Unmodified	_VKIVDEIRH_					0	0	0			REV__tr|U7SST6|U7SST6_FUSNUDolichol-phosphatemannosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01489PE=4SV=1	REV__tr|U7SST6|U7SST6_FUSNUDolichol-phosphatemannosyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01489PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	554.8274536132812	2	554.827298	1107.64004	0.32108	0.00017814	-0.10978	-6.0908E-05	0.2113	0.00011723	554.8269640591092	27.766	0.35937	27.424	27.295	27.655	-0.34201					9	6	2	0	0	0	0.58135	1	10126	10126		12.241	1.4167	1	32640000	+		36507	17780	23368	23489	35138	35138					0.09052809634272307
VKIVKVKKE	9	Unmodified	_VKIVKVKKE_					0	0	0		nc|ENSG00000180389|Q5VTU8|ATP5F1EP2;ENSG00000124172|ENST00000243997|ATP5F1E	nc|ENSG00000180389|Q5VTU8|ATP5F1EP2	nc|ENSG00000180389|Q5VTU8|ATP5F1EP2	MULTI-MSMS	HCT116MG_D190212_S1	1	357.5812072753906	3	357.581382	1069.72232	-0.10558	-3.7753E-05	-0.04854	-1.7357E-05	-0.15412	-5.511E-05	357.5812607508537	16.03	0.15636	16.03	15.952	16.109	0					6	2	3	0	0	0	0.28234	1	5389	5389		32.616	6.5958	1	7438000			36508	2830	23369	23490	35139	35139					0.1902433171321718
VKKAFGFG	8	Unmodified	_VKKAFGFG_					0	0	0		tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	427.25140380859375	2	427.250163	852.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.822	1	59.662	59.162	60.162	-0.16012								0	0	0	0.8837	1	23140	23140		0.69038	0	1				36509	18428	23370	23491	35140	35140					0.053630249395723695
VKKAFGFG	8	Unmodified	_VKKAFGFG_					0	0	0		tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	427.25152587890625	2	427.250163	852.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.632	1	60.483	59.983	60.983	-0.14852								0	0	0	0.8837	1	23470	23470		2.3027	1.5091	1				36510	18428	23370	23491	35141	35141					0.053630249395723695
VKKAFGFG	8	Unmodified	_VKKAFGFG_					0	0	0		tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	tr|U7ST62|U7ST62_FUSNUPhophatidylinositol-4-phosphate5-kinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01303PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	427.25146484375	2	427.250163	852.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.477	1	61.217	60.717	61.717	-0.2602								0	0	0	0.8837	1	23193	23193		2.5775	0	1				36511	18428	23370	23491	35142	35142					0.053630249395723695
VKKCIGGVIF	10	Unmodified	_VKKCIGGVIF_					0	0	0		ENSG00000109107|ENST00000226253|ALDOC;ENST00000582381.1_1_17:26902119-26903857:-|nuORF	ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	MSMS	HCT116MG_D190212_S4	4	355.0697937011719	3	355.215934	1062.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6443	1	7.4027	6.9027	7.9027	-0.24153								0	0	0	0.97045	1	2335	2335		0.15932	0.15932	1				36512	2194	23371	23492	35143	35143					0.09716440881607014
VKKEKKKKKKK	11	Unmodified	_VKKEKKKKKKK_					0	0	0			REV__ENST00000341776.6_1_6:15521185-15521434:+|nuORF	REV__ENST00000341776.6_1_6:15521185-15521434:+|nuORF	MSMS	HCT116MG_D190212_S3	3	467.3312683105469	3	467.332689	1398.97624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.845	1	61.607	61.107	62.107	-0.2387								0	0	0	0.96208	1	23613	23613		0	0	1		+		36513	14976	23372	23493	35144	35144					0.2927097881251939
VKKFEINK	8	Unmodified	_VKKFEINK_					0	0	0			REV__tr|U7T3K6|U7T3K6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00699PE=4SV=1	REV__tr|U7T3K6|U7T3K6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00699PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	503.30645751953125	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.368	1	56.062	55.562	56.562	-0.30626								0	0	0	0.8837	1	21129	21129		2.3027	0	1		+		36514	17713	23373	23494	35145	35145					0.09974923719596518
VKKFEINK	8	Unmodified	_VKKFEINK_					0	0	0			REV__tr|U7T3K6|U7T3K6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00699PE=4SV=1	REV__tr|U7T3K6|U7T3K6_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00699PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	503.305908203125	2	503.30821	1004.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.045	1	61.791	61.291	62.291	-0.25457								0	0	0	0.8837	1	23422	23422		0.69038	0	1		+		36515	17713	23373	23494	35146	35146					0.09974923719596518
VKKFRILK	8	Unmodified	_VKKFRILK_					0	0	0		ENST00000471904.1_1_2:192128111-192215016:+|nuORF	ENST00000471904.1_1_2:192128111-192215016:+|nuORF	ENST00000471904.1_1_2:192128111-192215016:+|nuORF	MSMS	HCT116MG_D190212_S1	1	516.3566284179688	2	516.358037	1030.70152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.718	1	58.718	58.218	59.218	0								0	0	0	0.8837	1	22627	22627		0	0	1				36516	8167	23374	23495	35147	35147					0.18739786124206148
VKKFRVKL	8	Unmodified	_VKKFRVKL_					0	0	0			REV__CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	REV__CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	509.3483581542969	2	509.350212	1016.68587	0.28444	0.00014488	-1.681	-0.00085621	-1.3965	-0.00071133	509.34809626609473	58.48	0.93053	58.48	58.135	59.066	0					30	18	3	0	0	0	0.88026	2	22519	22519;22583		0	0	1	55974000	+		36517	10287	23375	23496	35148;35149	35148					0.1781949960716247
VKKFRVKL	8	Unmodified	_VKKFRVKL_					0	0	0			REV__CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	REV__CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	509.32916259765625	2	509.350212	1016.68587	0.28444	0.00014488	-1.681	-0.00085621	-1.3965	-0.00071133	509.34809626609473	58.48	0.93053	58.48	58.135	59.066	0					30	18	3	0	0	0	0.33627	1	22488	22488		0	0	1	55974000	+		36518	10287	23375	23496	35150	35150					0.1781949960716247
VKKFRVKL	8	Unmodified	_VKKFRVKL_					0	0	0			REV__CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	REV__CPSF1|p.P950Lfs*6|1|0.13|ENSG00000071894|chr8:144396478-144396478|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	509.350212	1016.68587	0.4074	0.00020751	-4.3158	-0.0021983	-3.9084	-0.0019908	509.34782462270505	58.441	0.25389	58.271	58.196	58.449	-0.1703	-0.10444	-0.00044726	NaN	0	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16302000	+		36519	10287	23375	23496							0.1781949960716247
VKKGGAVV	8	Unmodified	_VKKGGAVV_					0	0	0		tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	379.24908447265625	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.165	1	60.919	60.419	61.419	-0.24588								0	0	0	0.8837	1	23338	23338		0.79363	0	1				36520	18605	23376	23497	35151	35151					0.09779024939564351
VKKIVVALKKR	11	Unmodified	_VKKIVVALKKR_					0	0	0		ENST00000496620.1_1_3:108044932-108045585:-|nuORF	ENST00000496620.1_1_3:108044932-108045585:-|nuORF	ENST00000496620.1_1_3:108044932-108045585:-|nuORF	MSMS	HCT116MG_D190212_S3	3	641.460693359375	2	641.458282	1280.90201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.678	1	48.362	47.862	48.862	-0.31596								0	0	0	0.96208	1	18315	18315		0	0	1				36521	8389	23377	23498	35152	35152					0.2727963572101544
VKKKKKIKIG	10	Unmodified	_VKKKKKIKIG_					0	0	0			REV__PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	REV__PPP1R10|p.H751Kfs*162|1|0.37|ENSG00000204569|chr6:30602386-30602398|CGTGAGGACGATG/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	390.6183776855469	3	390.620059	1168.83835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.117	1	13.956	13.456	14.456	-0.16089								0	0	0	0.97116	1	4457	4457		0	0	1		+		36522	14201	23378	23499	35153	35153					0.26068275283910225
VKKKKKKKKS	10	Unmodified	_VKKKKKKKKS_					0	0	0		ENST00000263464.7_1_11:102193503-102193566:+|nuORF	ENST00000263464.7_1_11:102193503-102193566:+|nuORF	ENST00000263464.7_1_11:102193503-102193566:+|nuORF	MSMS	HCT116MG_D190212_S1	1	615.4418334960938	2	615.442632	1228.87071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.752	1	36.752	36.252	37.252	0								0	0	0	0.97116	1	13710	13710		0	0	1				36523	6880	23379	23500	35154	35154					0.2654306268691471
VKKKKKQLIRL	11	Unmodified	_VKKKKKQLIRL_					0	0	0			REV__ENST00000265339.6_1_5:133726122-133726257:+|nuORF	REV__ENST00000265339.6_1_5:133726122-133726257:+|nuORF	MSMS	HCT116MG_D190212_S1	1	691.4910278320312	2	691.490114	1380.96567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.784	1	42.784	42.284	43.284	0								0	0	0	0.96208	1	16146	16146		0	0	1		+		36524	14672	23380	23501	35155	35155					0.29042996158113965
VKKKKLYLK	9	Unmodified	_VKKKKLYLK_					0	0	0			REV__ENST00000237530.10_1_20:35869751-35869895:+|nuORF	REV__ENST00000237530.10_1_20:35869751-35869895:+|nuORF	MSMS	HCT116MG_D190212_S3	3	574.39794921875	2	574.399902	1146.78525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.227	1	63.012	62.512	63.512	-0.21454								0	0	0	0.77025	1	24144	24144		0	0	1		+		36525	14557	23381	23502	35156	35156					0.21772897501227817
VKKKLFPLLK	10	Unmodified	_VKKKLFPLLK_					0	0	0			REV__nc|ENSG00000105792|A5D8W1-4|CFAP69	REV__nc|ENSG00000105792|A5D8W1-4|CFAP69	MSMS	HCT116MG_D190212_S1	1	405.28466796875	3	405.284677	1212.8322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.229	1	59.229	58.729	59.729	0								0	0	0	0.97116	1	22828	22828		0	0	1		+		36526	17100	23382	23503	35157	35157					0.23429757052394962
VKKKLRKRGRK	11	Unmodified	_VKKKLRKRGRK_					0	0	0		CCDC178|p.K632Rfs*9|1|0.1|ENSG00000166960|chr18:33223143-33223143|T/-|frameshift_variant	CCDC178|p.K632Rfs*9|1|0.1|ENSG00000166960|chr18:33223143-33223143|T/-|frameshift_variant	CCDC178|p.K632Rfs*9|1|0.1|ENSG00000166960|chr18:33223143-33223143|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	698.9887084960938	2	698.988604	1395.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.901	1	36.901	36.401	37.401	0								0	0	0	0.96208	1	13770	13770		0	0	1				36527	346	23383	23504	35158	35158					0.2805116582392202
VKKKLRPPT	9	Unmodified	_VKKKLRPPT_					0	0	0		nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000541623.5_1_11:72398731-72399534:-|nuORF;ENST00000542612.1_1_11:72398360-72400579:-|nuORF;ENST00000544721.5_1_11:72396711-72399699:-|nuORF;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-7|ARAP1	nc|ENSG00000186635|Q96P48-7|ARAP1	MSMS	HCT116MG_D190212_S2	2	356.2792663574219	3	356.241359	1065.70225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.492	1	58.322	57.822	58.822	-0.1703								0	0	0	0.77018	1	22608	22608		0.26902	0	1				36528	5899	23384	23505	35159	35159					0.17202580773277987
VKKMRNKREKR	11	Unmodified	_VKKMRNKREKR_					0	0	0			REV__ENSG00000138326|ENST00000372360|RPS24	REV__ENSG00000138326|ENST00000372360|RPS24	MSMS	HCT116MG_D190212_S3	3	491.4940185546875	3	491.636666	1471.88817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.11	1	14.186	13.686	14.686	0.07597								0	0	0	0.96149	1	4519	4519		0.08335	0	1		+		36529	12218	23385	23506	35160	35160					0.17110034950269437
VKKQKALVAKV	11	Unmodified	_VKKQKALVAKV_					0	0	0		ENST00000558825.5_1_15:91337395-91358506:+|nuORF;ENSG00000197299|ENST00000355112|BLM;BLM|p.G1220Pfs*25|1|0.09|ENSG00000197299|chr15:90804264-90804265|-/ACCTTTA|frameshift_variant;BLM|p.K1217Nfs*62|2|0.42|ENSG00000197299|chr15:90804254-90804254|A/-|frameshift_variant	ENST00000558825.5_1_15:91337395-91358506:+|nuORF	ENST00000558825.5_1_15:91337395-91358506:+|nuORF	MSMS	HCT116MG_D190212_S3	3	606.4125366210938	2	606.41354	1210.81253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.043	1	59.79	59.29	60.29	-0.25233								0	0	0	0.96208	1	22881	22881		0	0	1				36530	6134	23386	23507	35161	35161					0.21555381041616783
VKKRAIVKKLP	11	Unmodified	_VKKRAIVKKLP_					0	0	0		nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-2|ATP2C1	MSMS	HCT116MG_D190212_S2	2	427.3026428222656	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.802	1	42.732	42.232	43.232	-0.069984								0	0	0	0.9619	1	16210	16210		0.094841	0	1				36531	931	23387	23508	35162	35162					0.2580734920395571
VKKRHRRQR	9	Unmodified	_VKKRHRRQR_					0	0	0		nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2	nc|ENSG00000144057|Q96JF0-2|ST6GAL2	nc|ENSG00000144057|Q96JF0-2|ST6GAL2	MSMS	HCT116MG_D190212_S1	1	632.4004516601562	2	632.402696	1262.79084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.025	1	61.025	60.525	61.525	0								0	0	0	0.76913	1	23538	23538		3.9444	0.35734	1				36532	3849	23388	23509	35163	35163					0.16995433856300224
VKKRKKKNKK	10	Unmodified	_VKKRKKKNKK_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MSMS	HCT116MG_D190212_S1	1	429.08868408203125	3	428.969863	1283.88776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.714	1	10.714	10.214	11.214	0								0	0	0	0.97116	1	3308	3308		0	0	1		+		36533	10777	23389	23510	35164	35164					0.25716983292704754
VKKRRKKKK	9	Unmodified	_VKKRRKKKK_					0	0	0			REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S2	2	400.2904968261719	3	400.290936	1197.85098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.02	1	57.848	57.348	58.348	-0.17173								0	0	0	0.77025	1	22413	22413		0	0	1		+		36534	15902	23390	23511	35165	35165					0.2599673146680743
VKKRRKKKK	9	Unmodified	_VKKRRKKKK_					0	0	0			REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S3	3	400.2898864746094	3	400.290936	1197.85098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.961	1	49.646	49.146	50.146	-0.31525								0	0	0	0.77025	1	18827	18827		0	0	1		+		36535	15902	23390	23511	35166	35166					0.2599673146680743
VKKRRKKKK	9	Unmodified	_VKKRRKKKK_					0	0	0			REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S3	3	400.2903747558594	3	400.290936	1197.85098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.579	1	50.265	49.765	50.765	-0.31381								0	0	0	0.77025	1	19076	19076		0	0	1		+		36536	15902	23390	23511	35167	35167					0.2599673146680743
VKKRRKKKK	9	Unmodified	_VKKRRKKKK_					0	0	0			REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S4	4	400.2901611328125	3	400.290936	1197.85098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.625	1	54.302	53.802	54.802	-0.32349								0	0	0	0.77025	1	20430	20430		0	0	1		+		36537	15902	23390	23511	35168	35168					0.2599673146680743
VKKRRKKKK	9	Unmodified	_VKKRRKKKK_					0	0	0			REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S4	4	400.290283203125	3	400.290936	1197.85098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.09	1	55.784	55.284	56.284	-0.30626								0	0	0	0.77025	1	21018	21018		0	0	1		+		36538	15902	23390	23511	35169	35169					0.2599673146680743
VKKRRKKKKK	10	Unmodified	_VKKRRKKKKK_					0	0	0			REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	REV__ENST00000475181.1_1_3:112359734-112359896:-|nuORF	MSMS	HCT116MG_D190212_S2	2	664.3123168945312	2	663.980247	1325.94594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.861	1	27.519	27.019	28.019	-0.34201								0	0	0	0.9696	1	10139	10139		0.35063	0	1		+		36539	15902	23391	23512	35170	35170					0.29600664937993315
VKKRRLALKQR	11	Unmodified	_VKKRRLALKQR_					0	0	0			REV__MZT2A|p.L70Sfs*16|1|0.37|ENSG00000173272|chr2:131491987-131491987|G/-|frameshift_variant	REV__MZT2A|p.L70Sfs*16|1|0.37|ENSG00000173272|chr2:131491987-131491987|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	698.4727172851562	2	698.472786	1394.93102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.962	1	52.962	52.462	53.462	0								0	0	0	0.96208	1	20271	20271		0	0	1		+		36540	12620	23392	23513	35171	35171					0.2493517306998001
VKKSTKKIAR	10	Unmodified	_VKKSTKKIAR_					0	0	0			REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	MSMS	HCT116MG_D190212_S1	1	579.8856201171875	2	579.88769	1157.76083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.68	1	62.68	62.18	63.18	0								0	0	0	0.96453	1	24208	24208		1.4819	0.8804	1		+		36541	11507	23393	23514	35172	35172					0.1882563734775431
VKKVAKKVKK	10	Unmodified	_VKKVAKKVKK_					0	0	0			REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	578.4179077148438	2	578.418626	1154.8227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.744	1	58.461	57.961	58.961	-0.28305								0	0	0	0.97116	1	22088	22088		0	0	1		+		36542	17909	23394	23515	35173	35173					0.25147988766866547
VKKVAKKVKK	10	Unmodified	_VKKVAKKVKK_					0	0	0			REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	578.4195556640625	2	578.418626	1154.8227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.347	1	59.07	58.57	59.57	-0.27731								0	0	0	0.97116	1	22330	22330		0	0	1		+		36543	17909	23394	23515	35174	35174					0.25147988766866547
VKKVAKKVKK	10	Unmodified	_VKKVAKKVKK_					0	0	0			REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	578.4177856445312	2	578.418626	1154.8227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.954	1	59.683	59.183	60.183	-0.27156								0	0	0	0.97116	1	22576	22576		0	0	1		+		36544	17909	23394	23515	35175	35175					0.25147988766866547
VKKVAKKVKK	10	Unmodified	_VKKVAKKVKK_					0	0	0			REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	578.4185180664062	2	578.418626	1154.8227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.562	1	60.296	59.796	60.796	-0.26582								0	0	0	0.97116	1	22823	22823		0	0	1		+		36545	17909	23394	23515	35176	35176					0.25147988766866547
VKKVAKKVKK	10	Unmodified	_VKKVAKKVKK_					0	0	0			REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	REV__tr|U7T209|U7T209_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00800PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	578.4179077148438	2	578.418626	1154.8227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.298	1	61.038	60.538	61.538	-0.2602								0	0	0	0.97116	1	23121	23121		0	0	1		+		36546	17909	23394	23515	35177	35177					0.25147988766866547
VKKVTQKN	8	Unmodified	_VKKVTQKN_					0	0	0			REV__SV2C|p.K23N|1|0.24|ENSG00000122012|chr5:76131819-76131819|G/T|missense_variant	REV__SV2C|p.K23N|1|0.24|ENSG00000122012|chr5:76131819-76131819|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	472.3642578125	2	472.798009	943.581465	0.29924	0.00014148	-0.20834	-9.8502E-05	0.090898	4.2976E-05	472.7977798610849	15.002	0.26027	15.002	14.806	15.066	0					6	4	2	0	0	0	0.80542	1	4958	4958		10.824	2.9138	1	2293400	+		36547	17606	23395	23516	35178	35178					0.10741753059789971
VKKYIKGYKV	10	Unmodified	_VKKYIKGYKV_					0	0	0		tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1	tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1	tr|U7T3J7|U7T3J7_FUSNUEthanolamineutilizationproteinEutJOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00330PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	409.259521484375	3	409.26042	1224.75943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.133	1	41.83	41.33	42.33	-0.30301								0	0	0	0.94528	1	15686	15686		5.7834	3.8771	1				36548	18603	23396	23517	35179	35179					0.15604003258977173
VKLAAAAAR	9	Unmodified	_VKLAAAAAR_					0	0	0			REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	870.5502319335938	1	870.551962	869.544686	0.63307	0.00055112	-2.001	-0.0017419	-1.3679	-0.0011908	870.5498751498152	59.539	0.27548	59.539	59.372	59.647	0					13	8	2	0	0	0	0.77568	2	22916	22916;22956		0	0	1	348760	+		36549	16758	23397	23518	35180;35181	35180					0.10469501233876599
VKLAAAAAR	9	Unmodified	_VKLAAAAAR_					0	0	0			REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	870.551962	869.544686	0.63307	0.00055112	-2.001	-0.0017419	-1.3679	-0.0011908	870.5498751498152	59.539	0.27548	59.539	59.372	59.647	0	-0.12504	0.00016925	NaN	0	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348760	+		36550	16758	23397	23518							0.10469501233876599
VKLAAAAAR	9	Unmodified	_VKLAAAAAR_					0	0	0			REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	870.551962	869.544686	0.90591	0.00078864	-2.2024	-0.0019173	-1.2965	-0.0011287	870.5500764208205	59.948	2.5376	59.789	59.226	61.763	-0.15816	0.12504	-6.0938E-06	NaN	0	88	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16764000	+		36551	16758	23397	23518							0.10469501233876599
VKLAKAGKN	9	Unmodified	_VKLAKAGKN_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000484328.1_1_2:232327850-232329064:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S1	1	464.8006591796875	2	464.800552	927.58655	0.24842	0.00011546	-0.36413	-0.00016925	-0.11571	-5.3782E-05	464.80049362425194	15.021	0.67769	15.021	14.858	15.536	0					23	12	5	0	0	0	0.0067688	1	4969	4969		122.18	21.808	1	243700000			36552	2442	23398	23519	35182	35182					0.11986056922410171
VKLAKAGKN	9	Unmodified	_VKLAKAGKN_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000484328.1_1_2:232327850-232329064:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S1	1	928.594482421875	1	928.593827	927.58655	0.97879	0.00090889	-0.14861	-0.000138	0.83017	0.00077089	928.5939158892805	14.988	0.15621	14.988	14.91	15.066	0					4	2	2	0	0	0	0.090581	1	4976	4976		60.074	14.053	1	4205400			36553	2442	23398	23519	35183	35183					0.11986056922410171
VKLAKAGKN	9	Unmodified	_VKLAKAGKN_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000484328.1_1_2:232327850-232329064:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	HCT116MG_D190212_S2	2	464.8005676269531	2	464.800552	927.58655	0.064924	3.0177E-05	-0.22173	-0.00010306	-0.1568	-7.2883E-05	464.8003951347333	14.642	0.3126	14.323	14.088	14.401	-0.31952					7	5	2	0	0	0	0.020353	1	4812	4812		96.111	14.498	1	5064600			36554	2442	23398	23519	35184	35184					0.11986056922410171
VKLAKAGKN	9	Unmodified	_VKLAKAGKN_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000484328.1_1_2:232327850-232329064:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-SECPEP	HCT116MG_D190212_S2	2	464.1264953613281	2	464.800552	927.58655	0.064708	3.0076E-05	0.037603	1.7478E-05	0.10231	4.7554E-05	464.80043606423635	10.974	0.42526	10.7	10.484	10.909	-0.27364					27	14	3	0	0	0	0.25347	1	3491	3491		6.2058	2.6093	1	999690			36555	2442	23398	23519	35185	35185					0.11986056922410171
VKLAKKQN	8	Unmodified	_VKLAKKQN_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	HCT116MG_D190212_S1	1	464.80072021484375	2	464.800552	927.58655	0.26397	0.0001227	-0.25176	-0.00011702	0.012214	5.6771E-06	464.8003429910783	11.213	0.33721	11.213	10.994	11.332	0					11	6	3	0	0	0	0.64404	1	3499	3499		28.487	3.0875	1	945430	+		36556	17202	23399	23520	35186	35186					0.11986056922410171
VKLAKKQN	8	Unmodified	_VKLAKKQN_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	HCT116MG_D190212_S2	2	464.8004455566406	2	464.800552	927.58655	0.064708	3.0076E-05	0.037603	1.7478E-05	0.10231	4.7554E-05	464.80043606423635	10.974	0.42526	10.7	10.484	10.909	-0.27364					27	14	3	0	0	0	0.51336	1	3464	3464		39.957	3.8303	1	999690	+		36557	17202	23399	23520	35187	35187					0.11986056922410171
VKLAKKQN	8	Unmodified	_VKLAKKQN_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	464.800552	927.58655	0.26397	0.0001227	-0.25176	-0.00011702	0.012214	5.6771E-06	464.8003429910783	11.213	0.33721	11.213	10.994	11.332	0	0	0	NaN	28.487	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	945430	+		36558	17202	23399	23520							0.11986056922410171
VKLKLTRIVTT	11	Unmodified	_VKLKLTRIVTT_					0	0	0		FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant;FSIP2|p.V6322*|1|0.42|ENSG00000188738|chr2:185808265-185808265|A/-|frameshift_variant;FSIP2|p.K6528Nfs*5|1|0.33|ENSG00000188738|chr2:185808884-185808884|A/-|frameshift_variant;ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.D5579Mfs*10|1|0.09|ENSG00000188738|chr2:185806029-185806029|A/-|frameshift_variant;FSIP2|p.V5734Yfs*24|2|0.23|ENSG00000188738|chr2:185806499-185806499|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	FSIP2|p.K6152Rfs*27|1|0.43|ENSG00000188738|chr2:185807758-185807758|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	636.42333984375	2	636.424105	1270.83366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.926	1	58.926	58.426	59.426	0								0	0	0	0.96208	1	22712	22712		0	0	1				36559	5996	23400	23521	35188	35188					0.2090734635046374
VKLKRAAP	8	Unmodified	_VKLKRAAP_					0	0	0		nc|nan|Q9BVC5-2|C2orf49;ENSG00000135974|ENST00000258457|C2orf49	nc|nan|Q9BVC5-2|C2orf49	nc|nan|Q9BVC5-2|C2orf49	MULTI-MSMS	HCT116MG_D190212_S3	3	882.5845336914062	1	882.588348	881.581071	1.0147	0.00089559	-0.7648	-0.00067501	0.24993	0.00022059	882.5854129673494	60.299	3.5211	60.047	58.008	61.529	-0.25233					164	67	3	0	0	0	0.87576	1	23505	23505		0.79363	0	1	21512000			36560	3387	23401	23522	35189	35189					0.13554378130595524
VKLLHRKGP	9	Unmodified	_VKLLHRKGP_					0	0	0			REV__LIG3|p.W673L|1|0.41|ENSG00000005156|chr17:34998632-34998632|G/T|missense_variant	REV__LIG3|p.W673L|1|0.41|ENSG00000005156|chr17:34998632-34998632|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	524.343994140625	2	524.342918	1046.67128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.681	1	42.306	41.806	42.806	-0.37493								0	0	0	0.76781	1	15696	15696		8.5933	0.68312	1		+		36561	16977	23402	23523	35190	35190					0.14981427459042607
VKLLLDRGG	9	Unmodified	_VKLLLDRGG_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.N1476Mfs*12|1|0.21|ENSG00000145362|chr4:113350244-113350244|A/-|frameshift_variant;ANK2|p.E1746*|1|0.07|ENSG00000145362|chr4:113353848-113353849|-/C|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.R2581Efs*5|1|0.41|ENSG00000145362|chr4:113356352-113356353|-/A|frameshift_variant	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	HCT116MG_D190212_S1	1	485.8059387207031	2	485.805834	969.597115	0.32892	0.00015979	0.01221	5.9318E-06	0.34113	0.00016572	485.80580886051854	18.063	0.20847	18.063	17.933	18.141	0					5	3	2	0	0	0	0.11023	1	6189	6189		56.177	2.3442	1	6986700			36562	3907	23403	23524	35191	35191					0.11110039576851705
VKLLYKDVI	9	Unmodified	_VKLLYKDVI_					0	0	0			REV__ENSG00000162624|ENST00000356261|LHX8	REV__ENSG00000162624|ENST00000356261|LHX8	MSMS	HCT116MG_D190212_S3	3	364.23284912109375	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.907	1	58.643	58.143	59.143	-0.26405								0	0	0	0.76995	1	22420	22420		1.0715	0	1		+		36563	12885	23404	23525	35192	35192					0.13852936584976305
VKMQKSPQL	9	Unmodified	_VKMQKSPQL_					0	0	0			REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	530.3049926757812	2	529.804977	1057.5954	0.41952	0.00022226	-0.67825	-0.00035934	-0.25873	-0.00013708	529.8050093196855	35.996	0.36509	35.996	35.785	36.15	0					14	6	3	0	0	0	0.56733	1	13415	13415		13.042	0.80181	1	13914000	+		36564	11469	23405	23526	35193	35193					0.0689066249658481
VKMQKSPQL	9	Unmodified	_VKMQKSPQL_					0	0	0			REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.8056030273438	2	529.804977	1057.5954	0.77095	0.00040845	0.051277	2.7167E-05	0.82223	0.00043562	529.8049958637644	36.087	0.41344	35.959	35.761	36.174	-0.12799					19	7	3	0	0	0	0.53593	1	13479	13479		14.838	1.3304	1	66629000	+		36565	11469	23405	23526	35194	35194					0.0689066249658481
VKMQKSPQL	9	Unmodified	_VKMQKSPQL_					0	0	0			REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	529.804977	1057.5954	0.41952	0.00022226	-0.67825	-0.00035934	-0.25873	-0.00013708	529.8050093196855	35.996	0.36509	35.996	35.785	36.15	0	0.02344	-0.00063208	NaN	14.838	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13914000	+		36566	11469	23405	23526							0.0689066249658481
VKMQKSPQL	9	Unmodified	_VKMQKSPQL_					0	0	0			REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	REV__FBRSL1|p.P748Rfs*14|1|0.7|ENSG00000112787|chr12:132582175-132582175|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	529.804977	1057.5954	0.10719	5.6789E-05	-0.10694	-5.6656E-05	0.00025136	1.3317E-07	529.8048327163565	36.264	0.31194	35.964	35.781	36.093	-0.30042	-0.0091641	-2.6711E-05	NaN	14.838	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14686000	+		36567	11469	23405	23526							0.0689066249658481
VKMRLSVP	8	Unmodified	_VKMRLSVP_					0	0	0		PIAS4|p.R338Q|1|0.18|ENSG00000105229|chr19:4033451-4033451|G/A|missense_variant;ENSG00000105229|ENST00000262971|PIAS4	PIAS4|p.R338Q|1|0.18|ENSG00000105229|chr19:4033451-4033451|G/A|missense_variant	PIAS4|p.R338Q|1|0.18|ENSG00000105229|chr19:4033451-4033451|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	465.28564453125	2	465.28368	928.552807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.904	1	47.588	47.088	48.088	-0.3159								0	0	0	0.8837	1	18003	18003		2.5775	0	1				36568	1992	23406	23527	35195	35195					0.08567312159016183
VKPIKVKRKKK	11	Unmodified	_VKPIKVKRKKK_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MSMS	HCT116MG_D190212_S2	2	676.4841918945312	2	676.484831	1350.95511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.539	1	59.379	58.879	59.879	-0.16012								0	0	0	0.96208	1	23024	23024		0	0	1				36569	6094	23407	23528	35196	35196					0.2936701350365638
VKPKVAGNIF	10	Unmodified	_VKPKVAGNIF_					0	0	0		ENST00000480436.5_1_20:13370602-13370710:-|nuORF	ENST00000480436.5_1_20:13370602-13370710:-|nuORF	ENST00000480436.5_1_20:13370602-13370710:-|nuORF	MSMS	HCT116MG_D190212_S2	2	358.2225341796875	3	358.221965	1071.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.36	1	60.206	59.706	60.706	-0.15441								0	0	0	0.97045	1	23359	23359		0.15932	0.15932	1				36570	8242	23408	23529	35197	35197					0.11110899127993434
VKPVVDKRV	9	Unmodified	_VKPVVDKRV_					0	0	0			REV__nc|ENSG00000145996|Q5VV42-3|CDKAL1	REV__nc|ENSG00000145996|Q5VV42-3|CDKAL1	MSMS	HCT116MG_D190212_S1	1	520.3328857421875	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.174	1	52.174	51.674	52.674	0								0	0	0	0.7694	1	19949	19949		2.9952	0.10602	1		+		36571	10142	23409	23530	35198	35198					0.13718301502285613
VKQILKIRWRW	11	Unmodified	_VKQILKIRWRW_					0	0	0		KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant;nc|ENSG00000109790|Q96PQ7-4|KLHL5;KLHL5|p.V703Sfs*41|1|0.19|ENSG00000109790|chr4:39115222-39115222|G/-|frameshift_variant;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;KLHL5|p.M210Wfs*5|1|0.34|ENSG00000109790|chr4:39076065-39076065|A/-|frameshift_variant	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	763.4779663085938	2	763.477537	1524.94052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.683	1	62.683	62.183	63.183	0								0	0	0	0.96141	1	24209	24209		0.35063	0.35063	1				36572	2219	23410	23531	35199	35199					0.19904941355525807
VKQKAPKR	8	Unmodified	_VKQKAPKR_					0	0	0			REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	MULTI-MSMS	HCT116MG_D190212_S1	1	954.6216430664062	1	954.62071	953.613434	0.70196	0.0006701	0.016783	1.6022E-05	0.71874	0.00068612	954.620291473473	60.879	0.51311	60.879	60.749	61.262	0					20	9	3	0	0	0	0.86564	1	23484	23484		2.5775	0.27475	1	59398000	+		36573	10955	23411	23532	35200	35200					0.13477165533595326
VKQKKQRP	8	Unmodified	_VKQKKQRP_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2;CAMSAP2|p.M1437*|7|0.32|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-SECPEP	HCT116MG_D190212_S2	2	505.8454895019531	2	506.324725	1010.6349	0.48584	0.00024599	-0.11444	-5.7942E-05	0.37141	0.00018805	506.32448682584504	60.753	0.56786	60.605	60.373	60.941	-0.14852					21	10	3	0	0	0	0.33409	1	23574	23574		2.5775	0	1	30317000			36574	9435	23412	23533	35201	35201					0.1300055056231031
VKQWKEKKKKK	11	Unmodified	_VKQWKEKKKKK_					0	0	0		ENST00000493579.1_1_3:180041073-180041484:+|nuORF;ENSG00000017797|ENST00000383432|RALBP1	ENST00000493579.1_1_3:180041073-180041484:+|nuORF	ENST00000493579.1_1_3:180041073-180041484:+|nuORF	MSMS	HCT116MG_D190212_S1	1	729.4692993164062	2	729.469378	1456.9242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.691	1	17.691	17.191	18.191	0								0	0	0	0.96208	1	6037	6037		0	0	1				36575	932	23413	23534	35202	35202					0.21401815398758117
VKRGRLVPS	9	Unmodified	_VKRGRLVPS_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	HCT116MG_D190212_S1	1	506.3242492675781	2	506.324725	1010.6349	0.28468	0.00014414	-0.58082	-0.00029409	-0.29614	-0.00014995	506.3243098121285	60.774	1.3927	60.774	60.543	61.936	0					47	26	2	0	0	0	0.74607	1	23651	23651		2.0598	0	1	239860000			36576	2586	23414	23535	35203	35203					0.1300055056231031
VKRGRLVPS	9	Unmodified	_VKRGRLVPS_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	HCT116MG_D190212_S1	1	505.6628112792969	2	506.324725	1010.6349	0.28474	0.00014417	-1.0278	-0.0005204	-0.74306	-0.00037623	506.8259500019615	62.004	0.312	62.004	61.884	62.196	0					7	5	2	0	0	0	0.26938	1	23948	23948		2.0598	1.2661	1	2212300			36577	2586	23414	23535	35204	35204					0.1300055056231031
VKRKEVRYIP	10	Unmodified	_VKRKEVRYIP_					0	0	0			REV__nc|ENSG00000142611|Q9HAZ2-3|PRDM16	REV__nc|ENSG00000142611|Q9HAZ2-3|PRDM16	MULTI-MSMS	HCT116MG_D190212_S1	1	644.8997802734375	2	644.398422	1286.78229	0.61044	0.00039336	-1.1158	-0.000719	-0.50533	-0.00032563	644.3980191938988	61.046	0.77309	61.046	60.799	61.572	0					23	14	3	0	0	0	0.88752	1	23706	23706		1.6526	0.17072	1	8477400	+		36578	17151	23415	23536	35205	35205					0.15037022376463938
VKRKKIFWFYG	11	Unmodified	_VKRKKIFWFYG_					0	0	0		ENST00000504666.5_1_5:138443812-138443896:-|nuORF	ENST00000504666.5_1_5:138443812-138443896:-|nuORF	ENST00000504666.5_1_5:138443812-138443896:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	736.4330444335938	2	736.432264	1470.84998	0.74967	0.00055208	0.67095	0.00049411	1.4206	0.0010462	736.4327678909805	51.971	0.88221	51.971	51.5	52.383	0					22	16	2	0	0	0	0.74191	1	19929	19929		0.35063	0.043601	1	13685000			36579	8445	23416	23537	35206	35206					0.1333847230723677
VKRKRIVL	8	Unmodified	_VKRKRIVL_					0	0	0			REV__ENST00000556340.1_1_9:139265151-139266545:-|nuORF	REV__ENST00000556340.1_1_9:139265151-139266545:-|nuORF	MSMS	HCT116MG_D190212_S1	1	506.3601379394531	2	506.361111	1010.70767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.532	1	60.532	60.032	61.032	0								0	0	0	0.8837	1	23335	23335		0	0	1		+		36580	13937	23417	23538	35207	35207					0.20274304355723416
VKRKRIVL	8	Unmodified	_VKRKRIVL_					0	0	0			REV__ENST00000556340.1_1_9:139265151-139266545:-|nuORF	REV__ENST00000556340.1_1_9:139265151-139266545:-|nuORF	MSMS	HCT116MG_D190212_S1	1	506.3597412109375	2	506.361111	1010.70767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.057	1	62.057	61.557	62.557	0								0	0	0	0.8837	1	23956	23956		0.79363	0	1		+		36581	13937	23417	23538	35208	35208					0.20274304355723416
VKRKWLPLAS	10	Unmodified	_VKRKWLPLAS_					0	0	0			REV__ENST00000372902.3_1_X:100601433-100601490:-|nuORF	REV__ENST00000372902.3_1_X:100601433-100601490:-|nuORF	MSMS	HCT116MG_D190212_S2	2	599.5776977539062	2	599.376958	1196.73936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.224	1	38.131	37.631	38.631	-0.09301								0	0	0	0.90892	1	14354	14354		13.906	0	1		+		36582	15180	23418	23539	35209	35209					0.14886252319047344
VKRLYTTGK	9	Unmodified	_VKRLYTTGK_					0	0	0			REV__ENST00000503671.2_1_4:110737056-110740318:+|nuORF	REV__ENST00000503671.2_1_4:110737056-110740318:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	533.3242797851562	2	533.324391	1064.63423	0.25749	0.00013733	-0.066068	-3.5235E-05	0.19142	0.00010209	533.3241626944663	60.672	0.30827	60.672	60.491	60.799	0					8	5	2	0	0	0	0.74607	1	23377	23377		2.0598	0	1	17776000	+		36583	16127	23419	23540	35210	35210					0.10449711122601002
VKRNKLPV	8	Unmodified	_VKRNKLPV_					0	0	0		RBM25|p.K687N|1|0.07|ENSG00000119707|chr14:73111571-73111571|G/T|missense_variant	RBM25|p.K687N|1|0.07|ENSG00000119707|chr14:73111571-73111571|G/T|missense_variant	RBM25|p.K687N|1|0.07|ENSG00000119707|chr14:73111571-73111571|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	477.3167419433594	2	477.316369	952.618185	0.29341	0.00014005	0.64605	0.00030837	0.93946	0.00044842	477.3166853134254	58.708	0.30923	58.542	58.403	58.713	-0.1653					8	5	2	0	0	0	0.87635	1	22751	22751		0.69038	0	1	10805000			36584	9809	23420	23541	35211	35211					0.13998049676376922
VKRNKLPV	8	Unmodified	_VKRNKLPV_					0	0	0		RBM25|p.K687N|1|0.07|ENSG00000119707|chr14:73111571-73111571|G/T|missense_variant	RBM25|p.K687N|1|0.07|ENSG00000119707|chr14:73111571-73111571|G/T|missense_variant	RBM25|p.K687N|1|0.07|ENSG00000119707|chr14:73111571-73111571|G/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	477.316369	952.618185	0.085109	4.0624E-05	0.72355	0.00034536	0.80866	0.00038599	477.31672578602087	58.743	0.40719	58.743	58.413	58.82	0	0.10055	4.851E-05	NaN	0.69038	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22530000			36585	9809	23420	23541							0.13998049676376922
VKRPRKVVI	9	Unmodified	_VKRPRKVVI_					0	0	0			REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	REV__TJP2|p.P484Qfs*30|1|0.18|ENSG00000119139|chr9:69228107-69228107|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	547.7576293945312	2	547.879668	1093.74478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.057	1	48.903	48.403	49.403	-0.15405								0	0	0	0.76973	1	18763	18763		1.8442	0	1		+		36586	17637	23421	23542	35212	35212					0.20165975901500133
VKRRLLPM	8	Unmodified	_VKRRLLPM_					0	0	0		nc|ENSG00000095397|Q9P202-2|WHRN;ENSG00000095397|ENST00000362057|WHRN	nc|ENSG00000095397|Q9P202-2|WHRN	nc|ENSG00000095397|Q9P202-2|WHRN	MSMS	HCT116MG_D190212_S1	1	506.8267822265625	2	506.826047	1011.63754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.267	1	62.267	61.767	62.767	0								0	0	0	0.8837	1	24041	24041		0.79363	0	1				36587	9401	23422	23543	35213	35213					0.13218682695628559
VKRVKREHKRE	11	Unmodified	_VKRVKREHKRE_					0	0	0			REV__ENST00000374530.7_2_9:112931764-112931902:+|nuORF	REV__ENST00000374530.7_2_9:112931764-112931902:+|nuORF	MSMS	HCT116MG_D190212_S2	2	733.0059814453125	2	732.947133	1463.87971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.434	1	42.364	41.864	42.864	-0.069984								0	0	0	0.94851	1	16061	16061		7.1017	1.8048	1		+		36588	15203	23423	23544	35214	35214					0.16632804305299942
VKRVKREHKRE	11	Unmodified	_VKRVKREHKRE_					0	0	0			REV__ENST00000374530.7_2_9:112931764-112931902:+|nuORF	REV__ENST00000374530.7_2_9:112931764-112931902:+|nuORF	MSMS	HCT116MG_D190212_S2	2	732.9127197265625	2	732.947133	1463.87971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.502	1	42.432	41.932	42.932	-0.069984								0	0	0	0.95408	1	16089	16089		4.1895	2.7076	1		+		36589	15203	23423	23544	35215	35215					0.16632804305299942
VKRVNRKRIEL	11	Unmodified	_VKRVNRKRIEL_					0	0	0		NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant;ENSG00000169418|ENST00000368680|NPR1	NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant	NPR1|p.F763Sfs*37|1|0.08|ENSG00000169418|chr1:153688085-153688085|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	705.953369140625	2	705.954427	1409.8943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.73	1	62.73	62.23	63.23	0								0	0	0	0.96141	1	24228	24228		0.35063	0	1				36590	5072	23424	23545	35216	35216					0.20574876453451907
VKSITKERKV	10	Unmodified	_VKSITKERKV_					0	0	0		CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant;nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE;CENPE|p.R2080Gfs*3|1|0.3|ENSG00000138778|chr4:103138416-103138416|T/-|frameshift_variant;CENPE|p.S2121Efs*18|1|0.05|ENSG00000138778|chr4:103136302-103136303|-/TGCTC|frameshift_variant	CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant	CENPE|p.K2291Hfs*13|1|0.04|ENSG00000138778|chr4:103132746-103132747|-/ATTTGTATATG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	594.3770141601562	2	594.377155	1186.73976	0.50575	0.00030061	-0.60863	-0.00036176	-0.10288	-6.1152E-05	594.3763380383372	60.509	0.8166	60.509	60.034	60.85	0					29	16	3	0	0	0	0.89248	1	23278	23278		0.45834	0	1	61343000			36591	402	23425	23546	35217	35217					0.15385627248201672
VKSNFSILQLH	11	Unmodified	_VKSNFSILQLH_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S2	2	429.2483215332031	3	429.24695	1284.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.365	1	60.21	59.71	60.71	-0.15441								0	0	0	0.9598	1	23361	23361		0.40827	0	1				36592	803	23426	23547	35218	35218					0.08805036868579919
VKSNFSILQLH	11	Unmodified	_VKSNFSILQLH_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	429.2481994628906	3	429.24695	1284.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.398	1	60.132	59.632	60.632	-0.26582								0	0	0	0.9598	1	22756	22756		0.40827	0	1				36593	803	23426	23547	35219	35219					0.08805036868579919
VKSPELQAEAK	11	Unmodified	_VKSPELQAEAK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S3	3	600.3356323242188	2	600.335153	1198.65575	0.57672	0.00034622	-0.40957	-0.00024588	0.16714	0.00010034	600.3350229015713	21.711	0.42021	21.729	21.535	21.956	0.018448					14	7	3	0	0	0	0.61458	1	7632	7632		33.821	18.083	1	2955700			36594	4390	23427	23548	35220	35220					0.0643705136067183
VKSPELQAEAK	11	Unmodified	_VKSPELQAEAK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	HCT116MG_D190212_S4	4	600.3355712890625	2	600.335153	1198.65575	1.2601	0.00075649	-0.81252	-0.00048778	0.44759	0.0002687	600.3345966265522	22.077	0.36364	21.849	21.572	21.936	-0.22777					12	6	2	0	0	0	0.41382	1	7652	7652		53.798	33.217	1	3022600			36595	4390	23427	23548	35221	35221					0.0643705136067183
VKSPELQAEAK	11	Unmodified	_VKSPELQAEAK_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	600.335153	1198.65575	0.5154	0.00030942	0.45378	0.00027242	0.96919	0.00058184	600.3352452962515	21.902	0.26076	21.902	21.75	22.011	0	0.075252	0.00097258	NaN	53.798	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2066700			36596	4390	23427	23548							0.0643705136067183
VKSRHRRKKRR	11	Unmodified	_VKSRHRRKKRR_					0	0	0			REV__nc|ENSG00000067066|P23497-3|SP100	REV__nc|ENSG00000067066|P23497-3|SP100	MSMS	HCT116MG_D190212_S1	1	753.9859008789062	2	753.987458	1505.96036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.634	1	20.634	20.134	21.134	0								0	0	0	0.96149	1	7222	7222		0.30703	0	1		+		36597	10725	23428	23549	35222	35222					0.22762130138835346
VKSTLTTLSV	10	Unmodified	_VKSTLTTLSV_					0	0	0		ENST00000607005.5_1_5:477473-477927:+|nuORF	ENST00000607005.5_1_5:477473-477927:+|nuORF	ENST00000607005.5_1_5:477473-477927:+|nuORF	MSMS	HCT116MG_D190212_S1	1	524.8154296875	2	524.816064	1047.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.514	1	10.514	10.014	11.014	0								0	0	0	0.97116	1	3232	3232		0	0	1				36598	9114	23429	23550	35223	35223					0.09567165445969295
VKSTLTTLSV	10	Unmodified	_VKSTLTTLSV_					0	0	0		ENST00000607005.5_1_5:477473-477927:+|nuORF	ENST00000607005.5_1_5:477473-477927:+|nuORF	ENST00000607005.5_1_5:477473-477927:+|nuORF	MSMS	HCT116MG_D190212_S1	1	524.8157348632812	2	524.816064	1047.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.271	1	11.271	10.771	11.771	0								0	0	0	0.97116	1	3532	3532		0	0	1				36599	9114	23429	23550	35224	35224					0.09567165445969295
VKTEKSIPK	9	Unmodified	_VKTEKSIPK_					0	0	0		tr|U7T2E7|U7T2E7_FUSNU4Fe-4SMo/Wbis-MGD-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00424PE=4SV=1	tr|U7T2E7|U7T2E7_FUSNU4Fe-4SMo/Wbis-MGD-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00424PE=4SV=1	tr|U7T2E7|U7T2E7_FUSNU4Fe-4SMo/Wbis-MGD-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00424PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	515.3187255859375	2	515.318774	1028.623	0.17327	8.929E-05	0.31131	0.00016042	0.48458	0.00024971	515.3187763862524	18.732	0.15593	18.551	18.459	18.615	-0.18051					4	2	2	0	0	0	0.39784	1	6332	6332		22.736	3.4793	1	987220			36600	18576	23430	23551	35225	35225					0.10982889028446152
VKTEKSIPK	9	Unmodified	_VKTEKSIPK_					0	0	0		tr|U7T2E7|U7T2E7_FUSNU4Fe-4SMo/Wbis-MGD-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00424PE=4SV=1	tr|U7T2E7|U7T2E7_FUSNU4Fe-4SMo/Wbis-MGD-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00424PE=4SV=1	tr|U7T2E7|U7T2E7_FUSNU4Fe-4SMo/Wbis-MGD-typedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00424PE=4SV=1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	515.318774	1028.623	0.1987	0.0001024	0.12524	6.454E-05	0.32395	0.00016694	515.3189626110085	18.294	0.20855	18.37	18.257	18.465	0.076334	-0.090493	-4.4943E-05	NaN	22.736	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1318600			36601	18576	23430	23551							0.10982889028446152
VKTIKLPT	8	Unmodified	_VKTIKLPT_					0	0	0		XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	450.29852294921875	2	450.299853	898.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.087	1	43.713	43.213	44.213	-0.37373								0	0	0	0.8837	1	16229	16229		2.0598	0	1				36602	4579	23431	23552	35226	35226					0.13180422833636385
VKVKLSSL	8	Unmodified	_VKVKLSSL_					0	0	0			REV__UNC5B|p.P478S|1|0.29|ENSG00000107731|chr10:71291569-71291569|C/T|missense_variant	REV__UNC5B|p.P478S|1|0.29|ENSG00000107731|chr10:71291569-71291569|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	437.2908020019531	2	437.292028	872.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.872	1	48.507	48.007	49.007	-0.365								0	0	0	0.8837	1	18109	18109		0.69038	0.69038	1		+		36603	18043	23432	23553	35227	35227					0.12812136316620126
VKVKRYVSGKR	11	Unmodified	_VKVKRYVSGKR_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MSMS	HCT116MG_D190212_S1	1	660.4166870117188	2	660.417146	1318.81974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.385	1	60.385	59.885	60.885	0								0	0	0	0.95954	1	23276	23276		1.3295	0.13619	1				36604	3655	23433	23554	35228	35228					0.1730811364204783
VKVPVVLG	8	Unmodified	_VKVPVVLG_					0	0	0			REV__ENST00000301905.8_1_8:27695335-27695578:-|nuORF	REV__ENST00000301905.8_1_8:27695335-27695578:-|nuORF	MSMS	HCT116MG_D190212_S2	2	405.7743835449219	2	405.776014	809.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.326	1	58.155	57.655	58.655	-0.1703								0	0	0	0.8837	1	22539	22539		0.79363	0	1		+		36605	14793	23434	23555	35229	35229					0.12508768633460932
VKWPRYIRLQW	11	Unmodified	_VKWPRYIRLQW_					0	0	0		ENST00000434317.1_1_7:102395625-102396051:+|nuORF	ENST00000434317.1_1_7:102395625-102396051:+|nuORF	ENST00000434317.1_1_7:102395625-102396051:+|nuORF	MSMS	HCT116MG_D190212_S1	1	772.9474487304688	2	772.94607	1543.87759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.484	1	43.484	42.984	43.984	0								0	0	0	0.96149	1	16429	16429		0.30703	0	1				36606	7875	23435	23556	35230	35230					0.12740375567477713
VKWSLLVTYV	10	Unmodified	_VKWSLLVTYV_					0	0	0			REV__sp|Q6SW98|UL33_HCMVMG-proteincoupledreceptorhomologUL33OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL33PE=3SV=1	REV__sp|Q6SW98|UL33_HCMVMG-proteincoupledreceptorhomologUL33OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL33PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	604.3572998046875	2	604.357899	1206.70125	0.38736	0.0002341	-0.37484	-0.00022654	0.012512	7.5618E-06	604.3572985105072	61.513	2.1201	61.513	60.749	62.869	0					100	40	3	0	0	0	0.87801	1	23638	23638		3.9444	0.66309	1	16469000	+		36607	17581	23436	23557	35231	35231					0.10616321613701984
VKYRLLVRL	9	Unmodified	_VKYRLLVRL_					0	0	0			REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	MSMS	HCT116MG_D190212_S2	2	387.2601013183594	3	387.260642	1158.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.086	1	20.703	20.203	21.203	-0.38288								0	0	0	0.76886	1	7402	7402		4.897	2.1618	1		+		36608	14160	23437	23558	35232	35232					0.1870684269870253
VKYRLLVRL	9	Unmodified	_VKYRLLVRL_					0	0	0			REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	MSMS	HCT116MG_D190212_S2	2	387.26007080078125	3	387.260642	1158.7601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.14	1	24.764	24.264	25.264	-0.37521								0	0	0	0.76954	1	9040	9040		2.4985	1.427	1		+		36609	14160	23437	23558	35233	35233					0.1870684269870253
VLAALPEFIF	10	Unmodified	_VLAALPEFIF_					0	0	0		CCR3|p.K234Sfs*52|1|0.35|ENSG00000183625|chr3:46265852-46265852|A/-|frameshift_variant;ENSG00000183625|ENST00000395940|CCR3;nc|ENSG00000183625|P51677-2|CCR3	CCR3|p.K234Sfs*52|1|0.35|ENSG00000183625|chr3:46265852-46265852|A/-|frameshift_variant	CCR3|p.K234Sfs*52|1|0.35|ENSG00000183625|chr3:46265852-46265852|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	560.328369140625	2	560.326068	1118.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.459	1	40.081	39.581	40.581	-0.37828								0	0	0	0.93854	1	14844	14844		7.2892	0	1				36610	364	23438	23559	35234	35234					0.08300961176610144
VLAAPAPA	8	Unmodified	_VLAAPAPA_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MSMS	HCT116MG_D190212_S3	3	355.2148742675781	2	355.215789	708.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.654	1	53.355	52.855	53.855	-0.29946								0	0	0	0.8837	1	20312	20312		0.79363	0	1		+		36611	13043	23439	23560	35235	35235					0.051153606398429474
VLAAPAPA	8	Unmodified	_VLAAPAPA_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MSMS	HCT116MG_D190212_S4	4	355.2144470214844	2	355.215789	708.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.619	1	53.286	52.786	53.786	-0.33318								0	0	0	0.8837	1	20024	20024		0.79363	0	1		+		36612	13043	23439	23560	35236	35236					0.051153606398429474
VLAPAPEK	8	Unmodified	_VLAPAPEK_					0	0	0		HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|122|2|anti-sense	HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|122|2|anti-sense	HERVH-int_dup3527|chrX:4542813-4545870:-|8.094520876636611|0.0139942278604804|9.18|476.0|122|2|anti-sense	MULTI-MSMS	HCT116MG_D190212_S1	1	824.485107421875	1	824.48763	823.480354	0.75319	0.000621	-2.6211	-0.002161	-1.8679	-0.00154	824.484690008217	48.932	0.46593	48.932	48.717	49.183	0					11	8	2	0	0	0	0.82475	1	18680	18680		8.5933	0	1	5915300			36613	9221	23440	23561	35237	35237					0.06155301357091503
VLAPRPPDDP	10	Unmodified	_VLAPRPPDDP_					0	0	0		ENST00000478059.1_1_2:9667906-9695734:-|nuORF;ADAM17|p.V566Afs*58|1|0.4|ENSG00000151694|chr2:9497197-9497200|CAAA/-|frameshift_variant;nc|ENSG00000151694|P78536-2|ADAM17;ENSG00000151694|ENST00000310823|ADAM17	ENST00000478059.1_1_2:9667906-9695734:-|nuORF	ENST00000478059.1_1_2:9667906-9695734:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	359.5292053222656	3	359.529346	1075.56621	-0.21883	-7.8676E-05	0.1076	3.8685E-05	-0.11123	-3.9991E-05	359.52931868256695	20.429	0.21267	20.05	19.917	20.13	-0.37949					8	3	3	0	0	0	0.80458	1	7170	7170		6.6304	0	1	8388200			36614	35	23441	23562	35238	35238					0.03144841471953441
VLAPRPPDDP	10	Unmodified	_VLAPRPPDDP_					0	0	0		ENST00000478059.1_1_2:9667906-9695734:-|nuORF;ADAM17|p.V566Afs*58|1|0.4|ENSG00000151694|chr2:9497197-9497200|CAAA/-|frameshift_variant;nc|ENSG00000151694|P78536-2|ADAM17;ENSG00000151694|ENST00000310823|ADAM17	ENST00000478059.1_1_2:9667906-9695734:-|nuORF	ENST00000478059.1_1_2:9667906-9695734:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		3	359.529346	1075.56621	-0.18227	-6.553E-05	-0.1	-3.5954E-05	-0.28227	-0.00010148	359.5292125856959	19.678	0.15664	19.678	19.548	19.704	0	-0.18579	-0.00017501	NaN	6.6304	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1246800			36615	35	23441	23562							0.03144841471953441
VLAPRVLRA	9	Unmodified	_VLAPRVLRA_					0	0	0		ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MSMS	HCT116MG_D190212_S1	1	497.8298645019531	2	497.829643	993.644734	0.16616	8.2719E-05	-0.1658	-8.2539E-05	0.0003598	1.7912E-07	497.82960896167646	32.248	0.20789	32.248	32.118	32.326	0					6	3	2	0	0	0	0.084109	1	11907	11907		61.357	14.437	1	9866800			36616	1043	23442	23563	35239	35239					0.14765738567689368
VLAPRVLRA	9	Unmodified	_VLAPRVLRA_					0	0	0		ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MSMS	HCT116MG_D190212_S2	2	497.8296813964844	2	497.829643	993.644734	0.28961	0.00014418	-0.029726	-1.4798E-05	0.25989	0.00012938	497.8295780513023	32.563	0.31261	32.333	32.15	32.463	-0.23009					9	5	2	0	0	0	0.027492	1	12056	12056		88.904	35.328	1	48880000			36617	1043	23442	23563	35240	35240					0.14765738567689368
VLAPRVLRA	9	Unmodified	_VLAPRVLRA_					0	0	0		ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	497.829643	993.644734	0.42047	0.00020932	0.079737	3.9695E-05	0.50021	0.00024902	497.8294349877211	32.507	0.15626	32.228	32.15	32.306	-0.27841	-0.041132	0.00012071	NaN	88.904	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2825600			36618	1043	23442	23563							0.14765738567689368
VLASLVAH	8	Unmodified	_VLASLVAH_					0	0	0		ENST00000485807.1_1_1:227920095-227920875:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4	ENST00000485807.1_1_1:227920095-227920875:-|nuORF	ENST00000485807.1_1_1:227920095-227920875:-|nuORF	MSMS	HCT116MG_D190212_S1	1	405.2459716796875	2	405.247621	808.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.415	1	47.415	46.915	47.915	0								0	0	0	0.8837	1	18015	18015		0.79363	0	1				36619	1414	23443	23564	35241	35241					0.06878721076941474
VLCWRRDSL	9	Unmodified	_VLCWRRDSL_					0	0	0		ENST00000403150.5_1_7:1580646-1582276:+|nuORF	ENST00000403150.5_1_7:1580646-1582276:+|nuORF	ENST00000403150.5_1_7:1580646-1582276:+|nuORF	MSMS	HCT116MG_D190212_S4	4	383.2065734863281	3	383.206209	1146.5968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.154	1	58.877	58.377	59.377	-0.27731								0	0	0	0.76967	1	22254	22254		1.0715	0.3738	1				36620	7702	23444	23565	35242	35242					0.029362965853351852
VLDDKDYFL	9	Unmodified	_VLDDKDYFL_					0	0	0		ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	564.2844848632812	2	564.284597	1126.55464	0.42864	0.00024188	-0.49236	-0.00027783	-0.063716	-3.5954E-05	564.2843129059861	50.966	0.31007	50.787	50.604	50.914	-0.17869					12	5	3	0	0	0	0.030039	1	19544	19544		86.332	37.986	1	35253000			36621	2472	23445	23566	35243	35243					-0.003574003420453664
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		ENST00000426898.2_1_12:45610123-45776982:+|nuORF;ANO6|p.L393Wfs*37|1|0.4|ENSG00000177119|chr12:45388169-45388169|T/-|frameshift_variant;ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	524.3081665039062	2	524.307875	1046.6012	0.47554	0.00024933	-0.31656	-0.00016598	0.15898	8.3353E-05	524.3079539496808	53.642	0.25763	53.642	53.462	53.72	0					9	4	3	0	0	0	0.040027	1	20554	20554		79.596	11.516	1	31923000			36622	145	23446	23567	35244	35244					0.07976084279880524
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		ENST00000426898.2_1_12:45610123-45776982:+|nuORF;ANO6|p.L393Wfs*37|1|0.4|ENSG00000177119|chr12:45388169-45388169|T/-|frameshift_variant;ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	524.3080444335938	2	524.307875	1046.6012	0.30599	0.00016044	-0.10383	-5.4441E-05	0.20216	0.00010599	524.3076883614511	53.851	0.30994	53.661	53.48	53.79	-0.1894					10	5	2	0	0	0	0.02327	1	20719	20719		93.166	25.085	1	130420000			36623	145	23446	23567	35245	35245					0.07976084279880524
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		ENST00000426898.2_1_12:45610123-45776982:+|nuORF;ANO6|p.L393Wfs*37|1|0.4|ENSG00000177119|chr12:45388169-45388169|T/-|frameshift_variant;ANO6|p.V892*|1|0.32|ENSG00000177119|chr12:45429248-45429248|G/-|frameshift_variant;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	524.30810546875	2	524.307875	1046.6012	0.31892	0.00016721	0.52991	0.00027784	0.84884	0.00044505	524.3079076809777	54.073	0.26006	53.774	53.613	53.873	-0.29946					7	4	2	0	0	0	0.05892	1	20495	20495		70.332	18.064	1	4061000			36624	145	23446	23567	35246	35246					0.07976084279880524
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant;nc|ENSG00000109790|Q96PQ7-4|KLHL5;KLHL5|p.V703Sfs*41|1|0.19|ENSG00000109790|chr4:39115222-39115222|G/-|frameshift_variant;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-5|KLHL5	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	532.3049926757812	2	532.305332	1062.59611	0.91425	0.00048666	-0.59187	-0.00031506	0.32238	0.0001716	532.304967323812	46.814	0.30796	46.703	46.574	46.882	-0.11121					10	5	3	0	0	0	0.071914	1	17869	17869		63.961	25.987	1	35627000			36625	2219	23447	23568	35247	35247					0.06731780417271693
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant;nc|ENSG00000109790|Q96PQ7-4|KLHL5;KLHL5|p.V703Sfs*41|1|0.19|ENSG00000109790|chr4:39115222-39115222|G/-|frameshift_variant;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-5|KLHL5	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	532.2747802734375	2	532.305332	1062.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.133	1	46.819	46.319	47.319	-0.31405								0	0	0	0.029033	1	17692	17692		83.429	43.471	1				36626	2219	23447	23568	35248	35248					0.06731780417271693
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant;nc|ENSG00000109790|Q96PQ7-4|KLHL5;KLHL5|p.V703Sfs*41|1|0.19|ENSG00000109790|chr4:39115222-39115222|G/-|frameshift_variant;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-5|KLHL5	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	532.3050537109375	2	532.305332	1062.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.19	1	46.876	46.376	47.376	-0.31405								0	0	0	0.10186	1	17715	17715		55.503	15.545	1				36627	2219	23447	23568	35249	35249					0.06731780417271693
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant;nc|ENSG00000109790|Q96PQ7-4|KLHL5;KLHL5|p.V703Sfs*41|1|0.19|ENSG00000109790|chr4:39115222-39115222|G/-|frameshift_variant;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-5|KLHL5	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	KLHL5|p.Y716Vfs*2|1|0.33|ENSG00000109790|chr4:39115258-39115259|-/G|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	532.305332	1062.59611	0.4108	0.00021867	0.68022	0.00036208	1.091	0.00058075	532.8066724644331	46.804	0.20782	46.804	46.647	46.855	0	0.050525	0.00095338	NaN	63.961	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6116700			36628	2219	23447	23568							0.06731780417271693
VLDDLLRFG	9	Unmodified	_VLDDLLRFG_					0	0	0			REV__CD93|p.A315Gfs*34|1|0.31|ENSG00000125810|chr20:23085249-23085250|-/C|frameshift_variant	REV__CD93|p.A315Gfs*34|1|0.31|ENSG00000125810|chr20:23085249-23085250|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	524.29541015625	2	524.295299	1046.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.776	1	53.587	53.087	54.087	-0.1894								0	0	0	0.76694	1	20688	20688		11.64	0	1		+		36629	10129	23448	23569	35250	35250					0.05462029477325814
VLDEGSASV	9	Unmodified	_VLDEGSASV_					0	0	0		ENSG00000158050|ENST00000288943|DUSP2	ENSG00000158050|ENST00000288943|DUSP2	ENSG00000158050|ENST00000288943|DUSP2	MULTI-MSMS	HCT116MG_D190212_S2	2	876.4329223632812	1	876.430903	875.423627	0.705	0.00061789	0.57127	0.00050068	1.2763	0.0011186	876.4310670222663	30.749	0.25916	30.482	30.353	30.612	-0.26704					6	4	2	0	0	0	0.027492	1	11344	11344		88.904	24.667	1	21797000			36630	4355	23449	23570	35251	35251					-0.019067909900741142
VLDFIHYC	8	Unmodified	_VLDFIHYC_					0	0	0		nc|ENSG00000163832|Q0PNE2-2|ELP6;ENSG00000163832|ENST00000296149|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	MULTI-MSMS	HCT116MG_D190212_S2	2	505.74432373046875	2	505.244221	1008.47389	0.15129	7.6439E-05	-3.6145	-0.0018262	-3.4632	-0.0017498	505.7440481387826	30.389	0.25661	30.105	29.976	30.233	-0.28453					8	4	3	0	0	0	0.71835	1	11202	11202		20.871	1.5093	1	32036000			36631	4639	23450	23571	35252	35252					-0.030009598659376024
VLDGTIEY	8	Unmodified	_VLDGTIEY_					0	0	0		ENSG00000130332|ENST00000252622|LSM7	ENSG00000130332|ENST00000252622|LSM7	ENSG00000130332|ENST00000252622|LSM7	MULTI-MSMS	HCT116MG_D190212_S2	2	909.45703125	1	909.45639	908.449113	1.012	0.00092039	-0.2794	-0.0002541	0.73262	0.00066629	909.4559576482409	42.681	0.25971	42.611	42.481	42.741	-0.069984					11	4	3	0	0	0	0.25164	1	16165	16165		63.563	0	1	61318000			36632	3073	23451	23572	35253	35253					-0.008773164676654233
VLDIQNNLY	9	Unmodified	_VLDIQNNLY_					0	0	0		ENSG00000146232|ENST00000619360|NFKBIE;nc|ENSG00000146232|O00221|NFKBIE	ENSG00000146232|ENST00000619360|NFKBIE	ENSG00000146232|ENST00000619360|NFKBIE	MULTI-MSMS	HCT116MG_D190212_S3	3	546.6881103515625	2	546.290214	1090.56587	0.64478	0.00035224	-0.033773	-1.845E-05	0.611	0.00033379	546.2899380221536	48.976	0.21066	48.66	48.552	48.763	-0.31596					7	3	3	0	0	0	0.47829	1	18432	18432		18.135	7.3111	1	1979000			36633	3942	23452	23573	35254	35254					0.02421421752092101
VLDISGIF	8	Unmodified	_VLDISGIF_					0	0	0		CCDC168|p.V6139_S6140insLDI|1|0.0|ENSG00000175820|chr13:102732278-102732279|-/AAATGTCTA|inframe_insertion	CCDC168|p.V6139_S6140insLDI|1|0.0|ENSG00000175820|chr13:102732278-102732279|-/AAATGTCTA|inframe_insertion	CCDC168|p.V6139_S6140insLDI|1|0.0|ENSG00000175820|chr13:102732278-102732279|-/AAATGTCTA|inframe_insertion	MULTI-MSMS	HCT116MG_D190212_S2	2	432.24725341796875	2	432.247286	862.48002	0.039243	1.6963E-05	0.043403	1.8761E-05	0.082647	3.5724E-05	432.24724615421246	42.042	0.25982	41.974	41.808	42.068	-0.068195					6	4	2	0	0	0	0.40466	1	15924	15924		49.669	0	1	14443000			36634	345	23453	23574	35255	35255					0.04327881637243536
VLDLDTHVV	9	Unmodified	_VLDLDTHVV_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S1	1	505.77972412109375	2	505.779482	1009.54441	0.29618	0.0001498	0.18056	9.1324E-05	0.47675	0.00024113	505.7794071897804	44.663	0.15599	44.663	44.568	44.724	0					4	2	2	0	0	0	0.071351	1	16925	16925		64.236	28.109	1	8418900			36635	5985	23454	23575	35256	35256					0.04002036723386482
VLDLDTHVV	9	Unmodified	_VLDLDTHVV_					0	0	0		ENSG00000188483|ENST00000372491|IER5L;IER5L|p.G328Afs*29|2|0.11|ENSG00000188483|chr9:129177075-129177075|G/-|frameshift_variant	ENSG00000188483|ENST00000372491|IER5L	ENSG00000188483|ENST00000372491|IER5L	MULTI-MSMS	HCT116MG_D190212_S2	2	505.77984619140625	2	505.779482	1009.54441	0.67936	0.00034361	0.10576	5.3489E-05	0.78512	0.0003971	505.77941849755496	44.75	0.26095	44.665	44.482	44.743	-0.084797					9	4	3	0	0	0	0.084109	1	17008	17008		61.357	19.263	1	29954000			36636	5985	23454	23575	35257	35257					0.04002036723386482
VLDLTQPP	8	Unmodified	_VLDLTQPP_					0	0	0			REV__nc|ENSG00000141425|Q96P16-3|RPRD1A	REV__nc|ENSG00000141425|Q96P16-3|RPRD1A	MSMS	HCT116MG_D190212_S1	1	441.7487487792969	2	441.750193	881.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.164	1	48.164	47.664	48.664	0								0	0	0	0.8837	1	18319	18319		9.3474	0	1		+		36637	12330	23455	23576	35258	35258					0.04034980148901468
VLDNGILSY	9	Unmodified	_VLDNGILSY_					0	0	0		PLEKHA3|p.N164*|1|0.38|ENSG00000116095|chr2:178495533-178495534|-/T|frameshift_variant;ENST00000598554.1_1_19:42027644-42028339:-|nuORF;ENSG00000116095|ENST00000234453|PLEKHA3	PLEKHA3|p.N164*|1|0.38|ENSG00000116095|chr2:178495533-178495534|-/T|frameshift_variant	PLEKHA3|p.N164*|1|0.38|ENSG00000116095|chr2:178495533-178495534|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	993.525146484375	1	993.525138	992.517862	0.74075	0.00073595	-0.32932	-0.00032719	0.41142	0.00040876	993.5245318755708	50.704	0.20732	50.532	50.403	50.611	-0.1719					6	3	2	0	0	0	0.057285	1	19465	19465		71.134	6.8973	1	14750000			36638	2500	23456	23577	35259	35259					0.021303478320646718
VLDNRDKAK	9	Unmodified	_VLDNRDKAK_					0	0	0			REV__ENST00000493021.5_1_2:162567177-162757603:+|nuORF	REV__ENST00000493021.5_1_2:162567177-162757603:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	530.1339111328125	2	529.80128	1057.58801	0.50469	0.00026739	-0.37501	-0.00019868	0.12968	6.8706E-05	529.8012986579914	33.115	0.45035	33.115	32.794	33.244	0					18	8	3	0	0	0	0.20553	1	12187	12187		7.2892	0	1	23147000	+		36639	12417	23457	23578	35260	35260					0.06151646220496332
VLDPYLLKY	9	Unmodified	_VLDPYLLKY_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-SECPEP	HCT116MG_D190212_S1	1	562.3795776367188	2	562.323525	1122.6325	0.30764	0.00017299	0.36763	0.00020673	0.67526	0.00037972	562.8250959219156	51.626	0.25518	51.626	51.5	51.756	0					8	4	3	0	0	0	0.23301	1	19749	19749		15.847	7.2539	1	16868000			36640	6537	23458	23579	35261	35261					0.07608657313994627
VLDPYLLKY	9	Unmodified	_VLDPYLLKY_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-MSMS	HCT116MG_D190212_S2	2	562.323486328125	2	562.323525	1122.6325	0.56713	0.00031891	-0.26985	-0.00015174	0.29728	0.00016717	562.323209001661	51.889	0.30879	51.706	51.527	51.835	-0.18369					13	5	3	0	0	0	0.047849	1	19921	19921		75.761	20.987	1	122070000			36641	6537	23458	23579	35262	35262					0.07608657313994627
VLDPYLLKY	9	Unmodified	_VLDPYLLKY_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-MATCH	HCT116MG_D190212_S3	3		2	562.323525	1122.6325	0.38594	0.00021702	0.35398	0.00019905	0.73992	0.00041607	562.8254331938908	52.042	0.1814	51.733	51.645	51.827	-0.30927	0.044715	0.00019372	NaN	75.761	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5247900			36642	6537	23458	23579							0.07608657313994627
VLDQGKITEY	10	Unmodified	_VLDQGKITEY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MSMS	HCT116MG_D190212_S1	1	583.3097534179688	2	583.308603	1164.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.763	1	33.763	33.263	34.263	0								0	0	0	0.022649	1	12506	12506		121.5	75.804	1				36643	3373	23459	23580	35263	35263					0.026936735780054732
VLDQGKITEY	10	Unmodified	_VLDQGKITEY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	HCT116MG_D190212_S2	2	583.30908203125	2	583.308603	1164.60265	0.55073	0.00032125	-0.22937	-0.00013379	0.32136	0.00018745	583.3085209669578	33.858	0.20805	33.665	33.534	33.742	-0.19297					6	3	2	0	0	0	0.038098	1	12604	12604		96.034	55.795	1	20499000			36644	3373	23459	23580	35264	35264					0.026936735780054732
VLEDGQVL	8	Unmodified	_VLEDGQVL_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;HMCN2|p.P4784Qfs*22|1|0.32|ENSG00000148357|chr9:130430363-130430363|C/-|frameshift_variant;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	HCT116MG_D190212_S4	4	872.472900390625	1	872.472374	871.465098	0.62133	0.00054209	0.1883	0.00016429	0.80963	0.00070638	872.4724791910792	49.193	0.30629	48.828	48.659	48.965	-0.365					11	5	3	0	0	0	0.12463	1	18247	18247		89.427	0	1	10668000			36645	4020	23460	23581	35265	35265					0.024223897692422725
VLEENQEHY	9	Unmodified	_VLEENQEHY_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MSMS	HCT116MG_D190212_S1	1	580.7649536132812	2	580.76456	1159.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.107	1	25.107	24.607	25.607	0								0	0	0	0.38321	1	9017	9017		34.402	5.9149	1				36646	2297	23461	23582	35266	35266					-0.058809470126107044
VLEENQEHY	9	Unmodified	_VLEENQEHY_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	HCT116MG_D190212_S2	2	580.7647705078125	2	580.76456	1159.51457	0.42541	0.00024706	-0.041033	-2.3831E-05	0.38438	0.00022323	580.7644186326836	25.425	0.20933	25.056	24.978	25.187	-0.36914					5	3	2	0	0	0	0.077982	1	9183	9183		62.573	38.552	1	9839400			36647	2297	23461	23582	35267	35267					-0.058809470126107044
VLELPRVQM	9	Unmodified	_VLELPRVQM_					0	0	0		ENST00000602139.5_1_19:50474430-50476369:+|nuORF	ENST00000602139.5_1_19:50474430-50476369:+|nuORF	ENST00000602139.5_1_19:50474430-50476369:+|nuORF	MSMS	HCT116MG_D190212_S3	3	362.21051025390625	3	362.21096	1083.61105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.242	1	31.963	31.463	32.463	-0.27841								0	0	0	0.76877	1	11810	11810		2.9952	0	1				36648	9093	23462	23583	35268	35268					0.07258949013635174
VLEPCAYAPTY	11	Unmodified	_VLEPCAYAPTY_					0	0	0		B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant;ENSG00000182272|ENST00000329962|B4GALNT4	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	614.0050048828125	2	613.791732	1225.56891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.402	1	40.332	39.832	40.832	-0.070038								0	0	0	0.93552	1	15235	15235		13.906	0.86358	1				36649	246	23463	23584	35269	35269					-0.03485071185400557
VLETLTDVAHE	11	Unmodified	_VLETLTDVAHE_					0	0	0		ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	ENSG00000119760|ENST00000337768|SUPT7L	MULTI-SECPEP	HCT116MG_D190212_S2	2	613.768310546875	2	613.816793	1225.61903	0.57984	0.00035591	0.049622	3.0459E-05	0.62946	0.00038637	613.8167639544753	33.753	0.36405	33.56	33.327	33.691	-0.19297					17	6	4	0	0	0	0.36397	1	12474	12474		2.7352	0	1	210600000			36650	2665	23464	23585	35270	35270					0.015247547440594644
VLEWNGKPL	9	Unmodified	_VLEWNGKPL_					0	0	0		nc|ENSG00000079841|Q86UR5-12|RIMS1;nc|ENSG00000079841|Q86UR5-13|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1;ENST00000524197.1_1_6:72926891-72975792:+|nuORF;nc|ENSG00000079841|Q86UR5-10|RIMS1;RIMS1|p.R824*|1|0.13|ENSG00000079841|chr6:72251013-72251014|-/T|frameshift_variant;nc|ENSG00000079841|Q86UR5-9|RIMS1;nc|ENSG00000079841|Q86UR5-2|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1	nc|ENSG00000079841|Q86UR5-12|RIMS1	nc|ENSG00000079841|Q86UR5-12|RIMS1	MSMS	HCT116MG_D190212_S1	1	528.4811401367188	2	528.297842	1054.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.897	1	52.897	52.397	53.397	0								0	0	0	0.76834	1	20244	20244		6.7232	0	1				36651	9383	23465	23586	35271	35271					0.056023333399252806
VLFDVTGQVRL	11	Unmodified	_VLFDVTGQVRL_					0	0	0		ENSG00000013364|ENST00000357402|MVP;ENST00000565830.5_1_16:29841852-29843003:+|nuORF;MVP|p.R169Sfs*23|1|0.32|ENSG00000013364|chr16:29833995-29833995|G/-|frameshift_variant	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MSMS	HCT116MG_D190212_S1	1	623.8609008789062	2	623.861338	1245.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.859	1	54.859	54.359	55.359	0								0	0	0	0.95025	1	21050	21050		6.1918	1.2948	1				36652	910	23466	23587	35272	35272					0.09509634494270358
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MSMS	HCT116MG_D190212_S2	2	637.3252563476562	2	637.324785	1272.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.376	1	49.222	48.722	49.722	-0.15405								0	0	0	0.66492	1	18895	18895		40.239	18.702	1				36653	5997	23467	23588	35273	35273					0.009604609810139664
VLFGVETHV	9	Unmodified	_VLFGVETHV_					0	0	0		ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	MSMS	HCT116MG_D190212_S1	1	500.77691650390625	2	500.776742	999.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.907	1	46.907	46.407	47.407	0								0	0	0	0.71969	1	17809	17809		18.135	6.4947	1				36654	1174	23468	23589	35274	35274					0.03914357931557788
VLFGVETHV	9	Unmodified	_VLFGVETHV_					0	0	0		ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	HCT116MG_D190212_S1	1	501.2906494140625	2	500.776742	999.538931	0.45427	0.00022749	0.078922	3.9522E-05	0.5332	0.00026701	500.77667109974976	46.818	0.25984	46.818	46.647	46.907	0					6	4	2	0	0	0	0.028818	1	17779	17779		97.075	58.923	1	10017000			36655	1174	23468	23589	35275	35275					0.03914357931557788
VLFGVETHV	9	Unmodified	_VLFGVETHV_					0	0	0		ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7771301269531	2	500.776742	999.538931	0.8241	0.00041269	0.50342	0.0002521	1.3275	0.00066479	500.77686521216543	46.932	0.30737	46.81	46.615	46.922	-0.12175					9	5	2	0	0	0	0.050578	1	17895	17895		74.423	32.328	1	30394000			36656	1174	23468	23589	35276	35276					0.03914357931557788
VLFKLKLLNWR	11	Unmodified	_VLFKLKLLNWR_					0	0	0			REV__ENST00000435504.8_1_2:25964298-25964478:-|nuORF	REV__ENST00000435504.8_1_2:25964298-25964478:-|nuORF	MSMS	HCT116MG_D190212_S2	2	477.30718994140625	3	477.306252	1428.89693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.625	1	53.436	52.936	53.936	-0.1894								0	0	0	0.9593	1	20627	20627		1.4551	0	1		+		36657	15618	23469	23590	35277	35277					0.1996333185838921
VLFLFLLLVY	10	Unmodified	_VLFLFLLLVY_					0	0	0		ENSG00000254466|ENST00000530162|OR4D10	ENSG00000254466|ENST00000530162|OR4D10	ENSG00000254466|ENST00000530162|OR4D10	MSMS	HCT116MG_D190212_S3	3	620.3922119140625	2	620.391211	1238.76787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.426	1	59.168	58.668	59.668	-0.25832								0	0	0	0.96911	1	22630	22630		0.45834	0	1				36658	6596	23470	23591	35278	35278					0.1580355717560451
VLFLFLLLVY	10	Unmodified	_VLFLFLLLVY_					0	0	0		ENSG00000254466|ENST00000530162|OR4D10	ENSG00000254466|ENST00000530162|OR4D10	ENSG00000254466|ENST00000530162|OR4D10	MSMS	HCT116MG_D190212_S4	4	620.3928833007812	2	620.391211	1238.76787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.533	1	59.256	58.756	59.756	-0.27731								0	0	0	0.96911	1	22405	22405		0.45834	0	1				36659	6596	23470	23591	35279	35279					0.1580355717560451
VLFPPPML	8	Unmodified	_VLFPPPML_					0	0	0			REV__BRWD1|p.S1307Kfs*9|1|0.39|ENSG00000185658|chr21:39210910-39210911|-/T|frameshift_variant;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3	REV__nc|ENSG00000165288|Q6RI45-3|BRWD3	MULTI-MSMS	HCT116MG_D190212_S1	1	457.26422119140625	2	457.264425	912.514297	-0.0014054	-6.4266E-07	-0.0078448	-3.5872E-06	-0.0092502	-4.2298E-06	457.2643625930388	44.052	2.8608	44.052	42.538	45.399	0					83	54	3	0	0	0	0.84415	1	16962	16962		6.3541	0	1	31301000	+		36660	10056;13046	23471	23592	35280	35280					0.054540065244850666
VLFRGGPRGLL	11	Unmodified	_VLFRGGPRGLL_					0	0	0		ENST00000483409.1_1_6:7303794-7313353:-|nuORF;nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	ENST00000483409.1_1_6:7303794-7313353:-|nuORF	ENST00000483409.1_1_6:7303794-7313353:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	395.58013916015625	3	395.580264	1183.71896	0.023589	9.3313E-06	-0.036315	-1.4365E-05	-0.012726	-5.0342E-06	395.5801406722114	45.992	0.26138	45.992	45.765	46.027	0					10	4	3	0	0	0	0.042019	1	17424	17424		72.59	45.366	1	19708000			36661	2864	23472	23593	35281	35281					0.13445081659233438
VLFRGGPRGLL	11	Unmodified	_VLFRGGPRGLL_					0	0	0		ENST00000483409.1_1_6:7303794-7313353:-|nuORF;nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	ENST00000483409.1_1_6:7303794-7313353:-|nuORF	ENST00000483409.1_1_6:7303794-7313353:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	592.866943359375	2	592.866757	1183.71896	0.74024	0.00043886	-0.63759	-0.00037801	0.10265	6.0855E-05	592.866023762784	45.949	0.26138	45.949	45.765	46.027	0					8	4	2	0	0	0	0.034401	1	17426	17426		110.67	61.147	1	18329000			36662	2864	23472	23593	35282	35282					0.13445081659233438
VLGGFIWAV	9	Unmodified	_VLGGFIWAV_					0	0	0		ENSG00000120279|ENST00000367245|MYCT1	ENSG00000120279|ENST00000367245|MYCT1	ENSG00000120279|ENST00000367245|MYCT1	MSMS	HCT116MG_D190212_S1	1	481.2801818847656	2	481.278921	960.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.476	1	44.476	43.976	44.976	0								0	0	0	0.76877	1	16827	16827		5.2307	0.47466	1				36663	2694	23473	23594	35283	35283					0.061438671451242044
VLGGWWGL	8	Unmodified	_VLGGWWGL_					0	0	0			REV__ENST00000375784.7_1_6:31704194-31704266:-|nuORF	REV__ENST00000375784.7_1_6:31704194-31704266:-|nuORF	MSMS	HCT116MG_D190212_S1	1	444.2442626953125	2	444.242338	886.470124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.509	1	47.509	47.009	48.009	0								0	0	0	0.8837	1	18053	18053		2.8892	0	1		+		36664	15221	23474	23595	35284	35284					0.022347384224985944
VLGKIEKV	8	Unmodified	_VLGKIEKV_					0	0	0		LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	443.29205322265625	2	443.292028	884.569503	0.17764	7.8748E-05	0.21062	9.3364E-05	0.38826	0.00017211	443.2920266557479	28.108	0.15511	27.778	27.667	27.822	-0.32987					4	2	2	0	0	0	0.12475	1	10253	10253		89.401	24.166	1	20863000			36665	6244	23475	23596	35285	35285					0.12260136316604076
VLGKIEKV	8	Unmodified	_VLGKIEKV_					0	0	0		LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	443.292028	884.569503	0.057032	2.5282E-05	0.15584	6.9084E-05	0.21287	9.4366E-05	443.2923427599094	27.567	0.20618	27.567	27.438	27.644	0	-0.10321	0.00013352	NaN	89.401	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8152100			36666	6244	23475	23596							0.12260136316604076
VLGKIEKV	8	Unmodified	_VLGKIEKV_					0	0	0		LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant;LRBA|p.L2590*|1|0.41|ENSG00000198589|chr4:150310342-150310342|A/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	LRBA|p.T2011Qfs*11|1|0.19|ENSG00000198589|chr4:150599022-150599022|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	443.292028	884.569503	0.20486	9.0812E-05	-0.21272	-9.4296E-05	-0.0078589	-3.4838E-06	443.2919522276063	27.853	0.15604	27.665	27.569	27.725	-0.18847	-0.0048031	-0.00019324	NaN	89.401	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1236100			36667	6244	23475	23596							0.12260136316604076
VLGKQVLVV	9	Unmodified	_VLGKQVLVV_					0	0	0		ENSG00000185909|ENST00000332780|KLHDC8B;KLHDC8B|p.Q142Pfs*8|1|0.5|ENSG00000185909|chr3:49174280-49174281|-/C|frameshift_variant;KLHDC8B|p.G134Efs*56|1|0.18|ENSG00000185909|chr3:49174258-49174258|G/-|frameshift_variant	ENSG00000185909|ENST00000332780|KLHDC8B	ENSG00000185909|ENST00000332780|KLHDC8B	MULTI-MSMS	HCT116MG_D190212_S1	1	477.8208923339844	2	477.820953	953.627353	0.16096	7.6908E-05	-0.071159	-3.4001E-05	0.089796	4.2906E-05	477.82086808912163	52.099	0.25958	52.099	51.968	52.228	0					8	4	2	0	0	0	0.12335	1	19942	19942		53.576	5.2297	1	35294000			36668	5853	23476	23597	35286	35286					0.14868398242049352
VLGSALPPP	9	Unmodified	_VLGSALPPP_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MSMS	HCT116MG_D190212_S1	1	425.75390625	2	425.755278	849.496004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.072	1	15.072	14.572	15.572	0								0	0	0	0.76877	1	4981	4981		5.2307	0	1		+		36669	14288	23477	23598	35287	35287					0.06523587874130499
VLGVVKAN	8	Unmodified	_VLGVVKAN_					0	0	0		tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	tr|U7SXH2|U7SXH2_FUSNUAlanineracemaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00954PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	400.2541809082031	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.06	1	34.06	33.56	34.56	0								0	0	0	0.8837	1	12625	12625		5.7604	0	1				36670	18513	23478	23599	35288	35288					0.08903007593994516
VLHDRIVSV	9	Unmodified	_VLHDRIVSV_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	519.3089599609375	2	519.308741	1036.60293	0.21206	0.00011013	0.26615	0.00013822	0.47821	0.00024834	519.3090358176902	32.3	0.20809	32.3	32.17	32.378	0					5	3	2	0	0	0	0.31258	1	11942	11942		29.437	4.4462	1	5271200			36671	2337	23479	23600	35289	35289					0.08609138088513646
VLHDRIVSV	9	Unmodified	_VLHDRIVSV_					0	0	0		MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant;nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MED23|p.H1213Mfs*26|1|0.32|ENSG00000112282|chr6:131591362-131591362|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	519.308741	1036.60293	0.24881	0.00012921	-0.24338	-0.00012639	0.0054394	2.8247E-06	519.3086179409405	32.615	0.2085	32.404	32.273	32.482	-0.21135	0.052003	-0.00013794	NaN	29.437	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11907000			36672	2337	23479	23600							0.08609138088513646
VLHVPVHV	8	Unmodified	_VLHVPVHV_					0	0	0		sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1;sp|P16730|UL87_HCMVAProteinUL87OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL87PE=3SV=1	sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	450.2745361328125	2	450.276712	898.538872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.174	1	62.039	61.539	62.539	-0.13585								0	0	0	0.8837	1	24094	24094		0.79363	0.10326	1				36673	18208	23480	23601	35290	35290					0.08554402722222676
VLIATALQ	8	Unmodified	_VLIATALQ_					0	0	0			REV__ZC3H12C|p.A872T|1|0.43|ENSG00000149289|chr11:110165699-110165699|G/A|missense_variant	REV__ZC3H12C|p.A872T|1|0.43|ENSG00000149289|chr11:110165699-110165699|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	414.59765625	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.656	1	55.368	54.868	55.868	-0.28773								0	0	0	0.8837	1	21113	21113		0.79363	0	1		+		36674	18065	23481	23602	35291	35291					0.09099874391165486
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	HCT116MG_D190212_S2	2	560.3123168945312	2	560.31148	1118.60841	0.23658	0.00013256	0.26089	0.00014618	0.49748	0.00027874	560.3115002087196	37.358	0.25771	37.255	37.078	37.335	-0.10318					9	4	3	0	0	0	0.13316	1	14003	14003		51.63	5.9302	1	59381000			36675	1425	23482	23603	35292	35292					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MSMS	HCT116MG_D190212_S3	3	560.3121337890625	2	560.31148	1118.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.576	1	37.275	36.775	37.775	-0.30137								0	0	0	0.08589	1	13923	13923		60.074	3.8969	1				36676	1425	23482	23603	35293	35293					0.05384816880314247
VLIEPYWSP	9	Unmodified	_VLIEPYWSP_					0	0	0			REV__ENST00000275732.5_1_7:100286590-100286938:-|nuORF	REV__ENST00000275732.5_1_7:100286590-100286938:-|nuORF	MSMS	HCT116MG_D190212_S1	1	552.2930908203125	2	552.292225	1102.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.261	1	58.261	57.761	58.761	0								0	0	0	0.76967	1	22438	22438		2.0598	0	1		+		36677	14708	23483	23604	35294	35294					0.022715112457944997
VLIHLLML	8	Unmodified	_VLIHLLML_					0	0	0		ENST00000492535.1_1_22:32875160-32883832:+|nuORF;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7	ENST00000492535.1_1_22:32875160-32883832:+|nuORF	ENST00000492535.1_1_22:32875160-32883832:+|nuORF	MSMS	HCT116MG_D190212_S1	1	476.6156005859375	2	476.306624	950.598695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.693	1	52.693	52.193	53.193	0								0	0	0	0.8837	1	20161	20161		2.8892	0	1				36678	1677	23484	23605	35295	35295					0.12141957341236775
VLIIPRLIKL	10	Unmodified	_VLIIPRLIKL_					0	0	0			REV__ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant	REV__ARHGEF12|p.G1290Afs*71|1|0.09|ENSG00000196914|chr11:120480061-120480062|-/CTGCAAGAATTAAATTA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	393.31103515625	3	393.284677	1176.8322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.775	1	58.492	57.992	58.992	-0.28305								0	0	0	0.97116	1	22100	22100		0	0	1		+		36679	9981	23485	23606	35296	35296					0.2508575705239764
VLIIVLIKL	9	Unmodified	_VLIIVLIKL_					0	0	0			REV__ENSG00000167080|ENST00000393354|B4GALNT2	REV__ENSG00000167080|ENST00000393354|B4GALNT2	MSMS	HCT116MG_D190212_S2	2	512.30224609375	2	512.380646	1022.74674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.167	1	23.787	23.287	24.287	-0.38003								0	0	0	0.77025	1	8648	8648		0	0	1		+		36680	13135	23486	23607	35297	35297					0.2362759186673884
VLIIVLIKL	9	Unmodified	_VLIIVLIKL_					0	0	0			REV__ENSG00000167080|ENST00000393354|B4GALNT2	REV__ENSG00000167080|ENST00000393354|B4GALNT2	MSMS	HCT116MG_D190212_S3	3	512.380615234375	2	512.380646	1022.74674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.031	1	21.065	20.565	21.565	0.034473								0	0	0	0.77025	1	7307	7307		0	0	1		+		36681	13135	23486	23607	35298	35298					0.2362759186673884
VLILGRRLNRE	11	Unmodified	_VLILGRRLNRE_					0	0	0		KLHL24|p.F40Lfs*74|1|0.31|ENSG00000114796|chr3:183650471-183650471|T/-|frameshift_variant;nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	KLHL24|p.F40Lfs*74|1|0.31|ENSG00000114796|chr3:183650471-183650471|T/-|frameshift_variant	KLHL24|p.F40Lfs*74|1|0.31|ENSG00000114796|chr3:183650471-183650471|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	669.92236328125	2	669.920052	1337.82555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.865	1	59.705	59.205	60.205	-0.16012								0	0	0	0.95954	1	23157	23157		1.3295	0.13619	1				36682	2433	23487	23608	35299	35299					0.17015212153728498
VLILLLHM	8	Unmodified	_VLILLLHM_					0	0	0			REV__PNLIPRP3|p.E270Kfs*66|1|0.31|ENSG00000203837|chr10:116461284-116461284|A/-|frameshift_variant	REV__PNLIPRP3|p.E270Kfs*66|1|0.31|ENSG00000203837|chr10:116461284-116461284|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	476.306640625	2	476.306624	950.598695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.751	1	39.675	39.175	40.175	-0.076183								0	0	0	0.8837	1	14971	14971		0.79363	0	1		+		36683	17429	23488	23609	35300	35300					0.12141957341248144
VLILLLHM	8	Unmodified	_VLILLLHM_					0	0	0			REV__PNLIPRP3|p.E270Kfs*66|1|0.31|ENSG00000203837|chr10:116461284-116461284|A/-|frameshift_variant	REV__PNLIPRP3|p.E270Kfs*66|1|0.31|ENSG00000203837|chr10:116461284-116461284|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	476.3065185546875	2	476.306624	950.598695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.035	1	39.656	39.156	40.156	-0.37936								0	0	0	0.8837	1	14674	14674		0.79363	0	1		+		36684	17429	23488	23609	35301	35301					0.12141957341248144
VLILLLHM	8	Unmodified	_VLILLLHM_					0	0	0			REV__PNLIPRP3|p.E270Kfs*66|1|0.31|ENSG00000203837|chr10:116461284-116461284|A/-|frameshift_variant	REV__PNLIPRP3|p.E270Kfs*66|1|0.31|ENSG00000203837|chr10:116461284-116461284|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	476.30645751953125	2	476.306624	950.598695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.619	1	41.243	40.743	41.743	-0.37637								0	0	0	0.8837	1	15273	15273		0.79363	0	1		+		36685	17429	23488	23609	35302	35302					0.12141957341248144
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-SECPEP	HCT116MG_D190212_S1	1	510.63433837890625	2	510.844428	1019.6743	0.46384	0.00023695	-0.61941	-0.00031642	-0.15558	-7.9475E-05	510.844124038587	55.121	0.25396	55.121	54.994	55.247	0					7	4	2	0	0	0	0.03632	1	21184	21184		81.613	30.758	1	29735000			36686	5233	23489	23610	35303	35303					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	HCT116MG_D190212_S2	2	510.8446044921875	2	510.844428	1019.6743	0.30293	0.00015475	0.3183	0.0001626	0.62124	0.00031736	510.84445777582357	55.3	0.30462	55.112	54.918	55.222	-0.18797					14	5	3	0	0	0	0.007119	1	21329	21329		120.45	53.107	1	87313000			36687	5233	23489	23610	35304	35304					0.1652525779318239
VLIRGDVYW	9	Unmodified	_VLIRGDVYW_					0	0	0			REV__SLC38A1|p.V196I|1|0.3|ENSG00000111371|chr12:46206140-46206140|C/T|missense_variant	REV__SLC38A1|p.V196I|1|0.3|ENSG00000111371|chr12:46206140-46206140|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	560.9991455078125	2	560.811116	1119.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.19	1	49.036	48.536	49.536	-0.15405								0	0	0	0.76655	1	18818	18818		13.042	0	1		+		36688	17527	23490	23611	35305	35305					0.05266022231262468
VLIRPSSEVIV	11	Unmodified	_VLIRPSSEVIV_					0	0	0		ENST00000449387.1_1_11:28308937-28309159:-|nuORF	ENST00000449387.1_1_11:28308937-28309159:-|nuORF	ENST00000449387.1_1_11:28308937-28309159:-|nuORF	MSMS	HCT116MG_D190212_S2	2	606.8280639648438	2	606.371538	1210.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.53	1	55.345	54.845	55.845	-0.18565								0	0	0	0.94012	1	21408	21408		11.495	0.6952	1				36689	7975	23491	23612	35306	35306					0.13158805154080255
VLISKWFA	8	Unmodified	_VLISKWFA_					0	0	0			REV__tr|U7SF14|U7SF14_FUSNULipopolysaccharideheptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02359PE=4SV=1	REV__tr|U7SF14|U7SF14_FUSNULipopolysaccharideheptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02359PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	482.2847595214844	2	482.286746	962.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.234	1	43.234	42.734	43.734	0								0	0	0	0.44863	1	16328	16328		46.021	17.534	1		+		36690	17661	23492	23613	35307	35307					0.07616153662183933
VLKAIPRRKII	11	Unmodified	_VLKAIPRRKII_					0	0	0			REV__tr|U7T045|U7T045_FUSNURNA-bindingS4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00723PE=4SV=1	REV__tr|U7T045|U7T045_FUSNURNA-bindingS4domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00723PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	653.9568481445312	2	653.955907	1305.89726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.723	1	25.723	25.223	26.223	0								0	0	0	0.96141	1	9265	9265		0.35063	0.081612	1		+		36691	17889	23493	23614	35308	35308					0.25654751578258583
VLKAKKKKLK	10	Unmodified	_VLKAKKKKLK_					0	0	0		ENST00000539429.1_1_12:124144026-124144779:+|nuORF;nc|ENSG00000111358|Q13889-2|GTF2H3;ENSG00000111358|ENST00000543341|GTF2H3	ENST00000539429.1_1_12:124144026-124144779:+|nuORF	ENST00000539429.1_1_12:124144026-124144779:+|nuORF	MSMS	HCT116MG_D190212_S4	4	395.29046630859375	3	395.291943	1182.854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.841	1	56.541	56.041	57.041	-0.3004								0	0	0	0.97116	1	21319	21319		0	0	1				36692	2290	23494	23615	35309	35309					0.26988561800953903
VLKAPLKLLDP	11	Unmodified	_VLKAPLKLLDP_					0	0	0			REV__ENST00000380722.2_1_14:85996060-85996315:-|nuORF	REV__ENST00000380722.2_1_14:85996060-85996315:-|nuORF	MSMS	HCT116MG_D190212_S1	1	603.8921508789062	2	603.894649	1205.77475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.328	1	58.328	57.828	58.828	0								0	0	0	0.95731	1	22466	22466		2.4985	1.0166	1		+		36693	15272	23495	23616	35310	35310					0.18008870056155502
VLKEIVERV	9	Unmodified	_VLKEIVERV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	543.3419189453125	2	542.839874	1083.66519	0.61038	0.00033134	-0.40983	-0.00022247	0.20055	0.00010887	542.8395833551447	36.51	0.20724	36.389	36.285	36.492	-0.12127					5	3	2	0	0	0	0.13453	1	13679	13679		44.392	9.9902	1	13557000			36694	3346	23496	23617	35311	35311					0.12670864436836382
VLKFWHFRDYF	11	Unmodified	_VLKFWHFRDYF_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MSMS	HCT116MG_D190212_S2	2	779.4058837890625	2	779.403704	1556.79285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.773	1	36.658	36.158	37.158	-0.11478								0	0	0	0.95686	1	13762	13762		2.7352	1.5419	1		+		36695	10634	23497	23618	35312	35312					0.03673005030873355
VLKKIKKELKT	11	Unmodified	_VLKKIKKELKT_					0	0	0			REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	664.45556640625	2	664.455405	1326.89626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.656	1	59.656	59.156	60.156	0								0	0	0	0.96208	1	22992	22992		0	0	1		+		36696	17928	23498	23619	35313	35313					0.2458849241866119
VLKKIKKELKT	11	Unmodified	_VLKKIKKELKT_					0	0	0			REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	REV__tr|U7T2P5|U7T2P5_FUSNUUvrABCsystemproteinBOS=FusobacteriumnucleatumCTI-5OX=1316586GN=uvrBPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	664.4551391601562	2	664.455405	1326.89626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.764	1	62.518	62.018	63.018	-0.24605								0	0	0	0.96208	1	23701	23701		0	0	1		+		36697	17928	23498	23619	35314	35314					0.2458849241866119
VLKKIKKKKKK	11	Unmodified	_VLKKIKKKKKK_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;ENSG00000081019|ENST00000261441|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MSMS	HCT116MG_D190212_S1	1	685.0084838867188	2	685.010682	1368.00681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.358	1	24.358	23.858	24.858	0								0	0	0	0.96149	1	8716	8716		0.30703	0	1				36698	1407	23499	23620	35315	35315					0.33752757197567007
VLKKKIKLYK	10	Unmodified	_VLKKKIKLYK_					0	0	0			REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	REV__tr|U7SH90|U7SH90_FUSNUZetatoxindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02202PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	630.9418334960938	2	630.941934	1259.86931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.158	1	26.158	25.658	26.658	0								0	0	0	0.96937	1	9440	9440		0.40072	0.050084	1		+		36699	17676	23500	23621	35316	35316					0.24977428598162987
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S1	1	419.3153991699219	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.2945	1	8.2945	7.7945	8.7945	0								0	0	0	0.96937	1	2504	2504		0.13989	0	1				36700	8517	23501	23622	35317	35317					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S1	1	419.7536926269531	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.257	1	17.257	16.757	17.757	0								0	0	0	0.96377	1	5862	5862		0.69767	0	1				36701	8517	23501	23622	35318	35318					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S3	3	419.3154602050781	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.814	1	7.8305	7.3305	8.3305	0.016533								0	0	0	0.96937	1	2361	2361		0.13989	0	1				36702	8517	23501	23622	35319	35319					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S3	3	419.31549072265625	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3355	1	8.3521	7.8521	8.8521	0.016533								0	0	0	0.96937	1	2519	2519		0.13989	0	1				36703	8517	23501	23622	35320	35320					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S3	3	628.3689575195312	2	628.46865	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.269	1	47.953	47.453	48.453	-0.31596								0	0	0	0.97116	1	18150	18150		0	0	1				36704	8517	23501	23622	35321	35321					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S3	3	419.31536865234375	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.826	1	63.62	63.12	64.12	-0.20569								0	0	0	0.96937	1	24329	24329		0.13989	0	1				36705	8517	23501	23622	35322	35322					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S4	4	419.3153991699219	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2247	1	2.9601	2.4601	3.4601	-0.26456								0	0	0	0.96937	1	989	989		0.13989	0	1				36706	8517	23501	23622	35323	35323					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S4	4	419.3156433105469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.7367	1	3.4721	2.9721	3.9721	-0.26456								0	0	0	0.96937	1	1143	1143		0.13989	0	1				36707	8517	23501	23622	35324	35324					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S4	4	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2891	1	6.0322	5.5322	6.5322	-0.25684								0	0	0	0.96937	1	1919	1919		0.13989	0	1				36708	8517	23501	23622	35325	35325					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S4	4	419.3153991699219	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8091	1	6.559	6.059	7.059	-0.25015								0	0	0	0.96937	1	2085	2085		0.13989	0	1				36709	8517	23501	23622	35326	35326					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S4	4	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8602	1	9.661	9.161	10.161	-0.1993								0	0	0	0.96937	1	3023	3023		0.13989	0	1				36710	8517	23501	23622	35327	35327					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S4	4	419.3155822753906	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.367	1	10.168	9.6677	10.668	-0.19878								0	0	0	0.96937	1	3181	3181		0.13989	0	1				36711	8517	23501	23622	35328	35328					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	HCT116MG_D190212_S4	4	419.3155212402344	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.888	1	10.698	10.198	11.198	-0.18973								0	0	0	0.96937	1	3352	3352		0.13989	0	1				36712	8517	23501	23622	35329	35329					0.3054822610067731
VLKKLLKFG	9	Unmodified	_VLKKLLKFG_					0	0	0			REV__SERPINA12|p.A64V|1|0.05|ENSG00000165953|chr14:94498207-94498207|G/A|missense_variant	REV__SERPINA12|p.A64V|1|0.05|ENSG00000165953|chr14:94498207-94498207|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	523.2605590820312	2	523.360245	1044.70594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.894	1	34.597	34.097	35.097	-0.29707								0	0	0	0.77008	1	12860	12860		0.6015	0	1		+		36713	17506	23502	23623	35330	35330					0.18537250547115036
VLKKRLRKKRK	11	Unmodified	_VLKKRLRKKRK_					0	0	0		NFRKB|p.K311Rfs*13|8|0.27|ENSG00000170322|chr11:129882601-129882601|T/-|frameshift_variant	NFRKB|p.K311Rfs*13|8|0.27|ENSG00000170322|chr11:129882601-129882601|T/-|frameshift_variant	NFRKB|p.K311Rfs*13|8|0.27|ENSG00000170322|chr11:129882601-129882601|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	727.0184936523438	2	727.019904	1452.02525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.054	1	20.054	19.554	20.554	0								0	0	0	0.96208	1	6988	6988		0	0	1				36714	9693	23503	23624	35331	35331					0.3173231189211947
VLKLLLVAW	9	Unmodified	_VLKLLLVAW_					0	0	0		nc|ENSG00000110042|Q9Y2E6-2|DTX4;ENSG00000110042|ENST00000227451|DTX4	nc|ENSG00000110042|Q9Y2E6-2|DTX4	nc|ENSG00000110042|Q9Y2E6-2|DTX4	MSMS	HCT116MG_D190212_S2	2	352.23834228515625	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8328	1	4.7141	4.2141	5.2141	-0.11871								0	0	0	0.77018	1	1530	1530		0.26902	0	1				36715	2229	23504	23625	35332	35332					0.17033848172832222
VLKLLLVAW	9	Unmodified	_VLKLLLVAW_					0	0	0		nc|ENSG00000110042|Q9Y2E6-2|DTX4;ENSG00000110042|ENST00000227451|DTX4	nc|ENSG00000110042|Q9Y2E6-2|DTX4	nc|ENSG00000110042|Q9Y2E6-2|DTX4	MSMS	HCT116MG_D190212_S2	2	352.23846435546875	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9935	1	7.7623	7.2623	8.2623	-0.23116								0	0	0	0.77018	1	2505	2505		0.26902	0	1				36716	2229	23504	23625	35333	35333					0.17033848172832222
VLKNLAIVLK	10	Unmodified	_VLKNLAIVLK_					0	0	0		tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	370.9248352050781	3	370.925148	1109.75362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.127	1	11.127	10.627	11.627	0								0	0	0	0.97116	1	3474	3474		0	0	1				36717	18413	23505	23626	35334	35334					0.20312904747288485
VLKNLAIVLK	10	Unmodified	_VLKNLAIVLK_					0	0	0		tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	tr|U7SSD6|U7SSD6_FUSNUOmpA-likedomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01596PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	370.9246826171875	3	370.925148	1109.75362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.742	1	11.742	11.242	12.242	0								0	0	0	0.97116	1	3722	3722		0	0	1				36718	18413	23505	23626	35335	35335					0.20312904747288485
VLKRKKKLKK	10	Unmodified	_VLKRKKKLKK_					0	0	0		ENST00000372600.8_1_9:131679364-131679535:+|nuORF	ENST00000372600.8_1_9:131679364-131679535:+|nuORF	ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MSMS	HCT116MG_D190212_S3	3	423.6451110839844	3	423.646608	1267.918	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.069	1	11.116	10.616	11.616	0.04739								0	0	0	0.97116	1	3382	3382		0	0	1				36719	7461	23506	23627	35336	35336					0.2947534195791377
VLKRSRIP	8	Unmodified	_VLKRSRIP_					0	0	0		ENSG00000198858|ENST00000361574|R3HDM4	ENSG00000198858|ENST00000361574|R3HDM4	ENSG00000198858|ENST00000361574|R3HDM4	MSMS	HCT116MG_D190212_S4	4	484.8218994140625	2	484.821818	967.629084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.115	1	35.73	35.23	36.23	-0.38558								0	0	0	0.8837	1	13204	13204		11.114	1.767	1				36720	6288	23507	23628	35337	35337					0.14397452050650372
VLKRVVKHLRK	11	Unmodified	_VLKRVVKHLRK_					0	0	0			REV__ENSG00000156510|ENST00000354624|HKDC1	REV__ENSG00000156510|ENST00000354624|HKDC1	MSMS	HCT116MG_D190212_S3	3	688.469970703125	2	688.472255	1374.92996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.796	1	40.495	39.995	40.995	-0.30161								0	0	0	0.96208	1	15157	15157		0	0	1		+		36721	12725	23508	23629	35338	35338					0.25748958701092306
VLKSTKTRSS	10	Unmodified	_VLKSTKTRSS_					0	0	0			REV__ENST00000471460.1_1_10:50964809-50966620:-|nuORF	REV__ENST00000471460.1_1_10:50964809-50966620:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	553.8303833007812	2	553.830037	1105.64552	0.33096	0.0001833	0.13682	7.5777E-05	0.46779	0.00025907	553.8299464532647	48.125	1.7571	48.125	47.217	48.974	0					138	34	5	0	0	0	0.88823	1	18078	18078		1.4819	0	1	548110000	+		36722	14072	23509	23630	35339	35339					0.09692488426071577
VLKVFLENV	9	Unmodified	_VLKVFLENV_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MSMS	HCT116MG_D190212_S2	2	530.823974609375	2	530.823692	1059.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.242	1	53.053	52.553	53.553	-0.18922								0	0	0	0.022654	1	20470	20470		89.401	29.011	1				36723	4370	23510	23631	35340	35340					0.10540077033851958
VLKVSLILIY	10	Unmodified	_VLKVSLILIY_					0	0	0			REV__nc|ENSG00000189050|Q5M7Z0-2|RNFT1	REV__nc|ENSG00000189050|Q5M7Z0-2|RNFT1	MSMS	HCT116MG_D190212_S1	1	580.8875732421875	2	580.886293	1159.75803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.015	1	24.015	23.515	24.515	0								0	0	0	0.96377	1	8579	8579		1.6526	0.17072	1		+		36724	13986	23511	23632	35341	35341					0.1845436917024017
VLLALMVFL	9	Unmodified	_VLLALMVFL_					0	0	0		CHRNB2|p.T277M|1|0.53|ENSG00000160716|chr1:154571653-154571653|C/T|missense_variant	CHRNB2|p.T277M|1|0.53|ENSG00000160716|chr1:154571653-154571653|C/T|missense_variant	CHRNB2|p.T277M|1|0.53|ENSG00000160716|chr1:154571653-154571653|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	509.8221740722656	2	509.822107	1017.62966	0.33866	0.00017266	-0.12193	-6.2164E-05	0.21673	0.00011049	509.8219317926994	56.164	0.26835	55.857	55.668	55.937	-0.30626					6	4	2	0	0	0	0.7005	1	21061	21061		5.2307	0	1	2387100			36725	460	23512	23633	35342	35342					0.12155110655487533
VLLDKQIEP	9	Unmodified	_VLLDKQIEP_					0	0	0			REV__nc|ENSG00000136895|Q5VVW2-5|GARNL3	REV__nc|ENSG00000136895|Q5VVW2-5|GARNL3	MULTI-SECPEP	HCT116MG_D190212_S2	2	528.24560546875	2	527.810782	1053.60701	0.60596	0.00031983	-0.32373	-0.00017087	0.28223	0.00014896	527.8106239087275	40.634	0.30875	40.564	40.416	40.725	-0.069626					8	5	2	0	0	0	0.25723	1	15306	15306		4.3292	0	1	4343600	+		36726	12149	23513	23634	35343	35343					0.08235182791554507
VLLEVKKKE	9	Unmodified	_VLLEVKKKE_					0	0	0			REV__ENST00000465717.1_1_1:170508481-170508748:+|nuORF	REV__ENST00000465717.1_1_1:170508481-170508748:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	362.5689697265625	3	362.569142	1084.6856	-0.0023717	-8.599E-07	-0.41798	-0.00015155	-0.42035	-0.00015241	362.56893206184594	20.32	0.15592	20.118	20.04	20.196	-0.20133					4	2	2	0	0	0	0.62849	1	6977	6977		9.544	3.7605	1	2346200	+		36727	15823	23514	23635	35344	35344					0.14664035096643602
VLLFLLFLLL	10	Unmodified	_VLLFLLFLLL_					0	0	0		OR10Q1|p.V189Sfs*19|1|0.41|ENSG00000180475|chr11:58228311-58228311|C/-|frameshift_variant;ENSG00000180475|ENST00000316770|OR10Q1	OR10Q1|p.V189Sfs*19|1|0.41|ENSG00000180475|chr11:58228311-58228311|C/-|frameshift_variant	OR10Q1|p.V189Sfs*19|1|0.41|ENSG00000180475|chr11:58228311-58228311|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	602.4112548828125	2	602.409404	1202.80425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.713	1	61.474	60.974	61.974	-0.2387								0	0	0	0.96911	1	23559	23559		0.45834	0	1				36728	5600	23515	23636	35345	35345					0.21096434072342163
VLLFLLLFA	9	Unmodified	_VLLFLLLFA_					0	0	0			REV__ENST00000389262.8_1_22:19048277-19109719:-|nuORF	REV__ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MSMS	HCT116MG_D190212_S1	1	350.2322998046875	3	350.23169	1047.67324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.351	1	58.351	57.851	58.851	0								0	0	0	0.77018	1	22475	22475		0.26902	0	1		+		36729	10356	23516	23637	35346	35346					0.15131043424275958
VLLFLLLFA	9	Unmodified	_VLLFLLLFA_					0	0	0			REV__ENST00000389262.8_1_22:19048277-19109719:-|nuORF	REV__ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MSMS	HCT116MG_D190212_S3	3	350.2325439453125	3	350.23169	1047.67324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.398	1	58.129	57.629	58.629	-0.26932								0	0	0	0.76991	1	22214	22214		1.1933	0	1		+		36730	10356	23516	23637	35347	35347					0.15131043424275958
VLLHKRELI	9	Unmodified	_VLLHKRELI_					0	0	0		IL1RAPL1|p.M355I|1|0.68|ENSG00000169306|chrX:29941658-29941658|G/A|missense_variant	IL1RAPL1|p.M355I|1|0.68|ENSG00000169306|chrX:29941658-29941658|G/A|missense_variant	IL1RAPL1|p.M355I|1|0.68|ENSG00000169306|chrX:29941658-29941658|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	374.0797119140625	3	374.244881	1119.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.243	1	62.107	61.607	62.607	-0.13585								0	0	0	0.76995	1	24122	24122		1.0715	0	1				36731	9237	23517	23638	35348	35348					0.1577456342770347
VLLHMLSGVGL	11	Unmodified	_VLLHMLSGVGL_					0	0	0			REV__ENST00000553077.5_1_16:68156243-68156372:+|nuORF	REV__ENST00000553077.5_1_16:68156243-68156372:+|nuORF	MSMS	HCT116MG_D190212_S4	4	380.2278137207031	3	380.22661	1137.658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.827	1	56.527	56.027	57.027	-0.3004								0	0	0	0.95925	1	21313	21313		0.50596	0	1		+		36732	16434	23518	23639	35349	35349					0.09467808564795632
VLLILPILVM	10	Unmodified	_VLLILPILVM_					0	0	0			REV__ENSG00000170006|ENST00000304385|TMEM154	REV__ENSG00000170006|ENST00000304385|TMEM154	MSMS	HCT116MG_D190212_S3	3	562.8255004882812	2	562.379789	1122.74502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.143	1	51.834	51.334	52.334	-0.30927								0	0	0	0.95179	1	19705	19705		4.3292	2.0265	1		+		36733	13276	23519	23640	35350	35350					0.18856214786501369
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	HCT116MG_D190212_S1	1	540.368408203125	2	540.368601	1078.72265	0.58814	0.00031781	-0.32728	-0.00017685	0.26086	0.00014096	540.3682179374754	37.734	0.20881	37.734	37.602	37.811	0					5	3	2	0	0	0	0.060393	1	14115	14115		81.89	62.633	1	8247500			36734	3861	23520	23641	35351	35351					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	HCT116MG_D190212_S1	1	360.5814514160156	3	360.581493	1078.72265	-0.04165	-1.5018E-05	-0.0049534	-1.7861E-06	-0.046603	-1.6804E-05	360.5814896808112	37.734	0.26071	37.734	37.55	37.811	0					7	4	2	0	0	0	0.71349	1	14130	14130		16.566	4.3911	1	10421000			36735	3861	23520	23641	35352	35352					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	HCT116MG_D190212_S2	2	540.3683471679688	2	540.368601	1078.72265	0.26609	0.00014379	0.31344	0.00016938	0.57953	0.00031316	540.3686372587041	37.77	0.36025	37.666	37.486	37.847	-0.10318					13	6	3	0	0	0	0.02502	1	14177	14177		111.29	82.205	1	93126000			36736	3861	23520	23641	35353	35353					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	HCT116MG_D190212_S2	2	360.58154296875	3	360.581493	1078.72265	-0.39343	-0.00014186	0.5194	0.00018729	0.12597	4.5423E-05	360.5816299517763	37.786	0.25745	37.686	37.541	37.798	-0.099861					11	4	3	0	0	0	0.30623	1	14192	14192		49.527	28.946	1	51823000			36737	3861	23520	23641	35354	35354					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	HCT116MG_D190212_S3	3	360.58148193359375	3	360.581493	1078.72265	0.011802	4.2555E-06	0.13917	5.0181E-05	0.15097	5.4436E-05	360.5814717540868	37.971	0.19816	37.669	37.583	37.781	-0.30137					12	6	3	0	0	0	0.23641	1	14049	14049		40.725	21.363	1	17474000			36738	3861	23520	23641	35355	35355					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	HCT116MG_D190212_S3	3	540.87109375	2	540.368601	1078.72265	0.56515	0.00030539	-0.32562	-0.00017595	0.23954	0.00012944	540.3679751735822	38.005	0.25005	37.704	37.583	37.833	-0.30137					15	7	3	0	0	0	0.029196	1	14051	14051		103.75	74.667	1	20871000			36739	3861	23520	23641	35356	35356					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	HCT116MG_D190212_S4	4	360.5815734863281	3	360.581493	1078.72265	-0.25105	-9.0523E-05	0.39309	0.00014174	0.14205	5.122E-05	360.5815883670338	38.062	0.201	37.679	37.611	37.812	-0.38282					13	5	3	0	0	0	0.48679	1	13936	13936		24.882	8.3157	1	7289300			36740	3861	23520	23641	35357	35357					0.18643751433069156
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	HCT116MG_D190212_S4	4	540.368408203125	2	540.368601	1078.72265	0.21389	0.00011558	0.15164	8.1939E-05	0.36553	0.00019752	540.3680726014827	38.064	0.201	37.682	37.611	37.812	-0.38283					13	5	3	0	0	0	0.54141	2	13937	13937;13956		32.305	17.467	1	6888600			36741	3861	23520	23641	35358;35359	35358					0.18643751433069156
VLLKKVRMH	9	Unmodified	_VLLKKVRMH_					0	0	0			REV__ENST00000530196.1_1_14:70713981-70714470:-|nuORF	REV__ENST00000530196.1_1_14:70713981-70714470:-|nuORF	MSMS	HCT116MG_D190212_S4	4	562.3600463867188	2	562.360253	1122.70595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.647	1	56.342	55.842	56.842	-0.30513								0	0	0	0.7696	1	21240	21240		2.3027	0	1		+		36742	9851	23521	23642	35360	35360					0.14950927275481263
VLLKLKIKNLI	11	Unmodified	_VLLKLKIKNLI_					0	0	0			REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	REV__tr|U7SHC5|U7SHC5_FUSNUtRNA(guanine-N(7)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmBPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	432.30633544921875	3	432.311003	1293.91118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.516	1	13.59	13.09	14.09	0.074899								0	0	0	0.96208	1	4291	4291		0	0	1		+		36743	17679	23522	23643	35361	35361					0.27597984286694555
VLLLELLT	8	Unmodified	_VLLLELLT_					0	0	0		ENST00000506153.5_1_16:2889659-2891196:-|nuORF;ENST00000476276.5_1_16:2889659-2890331:-|nuORF	ENST00000506153.5_1_16:2889659-2891196:-|nuORF	ENST00000506153.5_1_16:2889659-2891196:-|nuORF	MSMS	HCT116MG_D190212_S4	4	457.3021240234375	2	457.302062	912.58957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.379	1	34.993	34.493	35.493	-0.38606								0	0	0	0.8837	1	12955	12955		2.8892	0	1				36744	8204	23523	23644	35362	35362					0.1297788725656801
VLLLKHIL	8	Unmodified	_VLLLKHIL_					0	0	0		ENST00000266126.9_1_14:75475951-75476050:+|nuORF	ENST00000266126.9_1_14:75475951-75476050:+|nuORF	ENST00000266126.9_1_14:75475951-75476050:+|nuORF	MSMS	HCT116MG_D190212_S1	1	474.8333740234375	2	474.833863	947.653173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.818	1	10.818	10.318	11.318	0								0	0	0	0.8837	1	3350	3350		0.79363	0	1				36745	6905	23524	23645	35363	35363					0.1772529248430601
VLLLKKGA	8	Unmodified	_VLLLKKGA_					0	0	0		nc|ENSG00000085382|Q8IYU2-4|HACE1;ENSG00000085382|ENST00000262903|HACE1;HACE1|p.L761Yfs*33|1|0.23|ENSG00000085382|chr6:104750402-104750402|A/-|frameshift_variant	nc|ENSG00000085382|Q8IYU2-4|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	MULTI-MSMS	HCT116MG_D190212_S1	1	421.277099609375	2	421.297114	840.579674	-0.10468	-4.4102E-05	-1.1294	-0.00047583	-1.2341	-0.00051993	421.2958457145503	58.458	0.3542	58.458	58.261	58.615	0					14	6	3	0	0	0	0.87635	1	22486	22486		0.69038	0	1	19830000			36746	1453	23525	23646	35364	35364					0.15300744041837788
VLLLLLFIIVF	11	Unmodified	_VLLLLLFIIVF_					0	0	0		ENSG00000179363|ENST00000319560|TMEM31	ENSG00000179363|ENST00000319560|TMEM31	ENSG00000179363|ENST00000319560|TMEM31	MSMS	HCT116MG_D190212_S3	3	651.9435424804688	2	651.943611	1301.87267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.616	1	35.317	34.817	35.817	-0.29922								0	0	0	0.96141	1	13136	13136		0.35063	0	1				36747	5552	23526	23647	35365	35365					0.23380678652165443
VLLLLLGPLP	10	Unmodified	_VLLLLLGPLP_					0	0	0			REV__ENST00000355280.10_1_17:4800600-4800690:+|nuORF	REV__ENST00000355280.10_1_17:4800600-4800690:+|nuORF	MSMS	HCT116MG_D190212_S3	3	524.36279296875	2	524.362453	1046.71035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.859	1	39.558	39.058	40.058	-0.30137								0	0	0	0.96291	1	14783	14783		1.8442	0	1		+		36748	15036	23527	23648	35366	35366					0.18886714970039975
VLLLLLLFFI	10	Unmodified	_VLLLLLLFFI_					0	0	0		nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	MSMS	HCT116MG_D190212_S1	1	602.4115600585938	2	602.409404	1202.80425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.871	1	59.871	59.371	60.371	0								0	0	0	0.97116	1	23074	23074		0	0	1				36749	2237	23528	23649	35367	35367					0.21096434072342163
VLLLLLLFFI	10	Unmodified	_VLLLLLLFFI_					0	0	0		nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	MSMS	HCT116MG_D190212_S3	3	602.4113159179688	2	602.409404	1202.80425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.397	1	62.166	61.666	62.666	-0.23129								0	0	0	0.97116	1	23835	23835		0	0	1				36750	2237	23528	23649	35368	35368					0.21096434072342163
VLLLLLLLLLL	11	Unmodified	_VLLLLLLLLLL_					0	0	0		ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;PLXNA1|p.G417Afs*18|1|0.28|ENSG00000114554|chr3:126991434-126991434|G/-|frameshift_variant;PLXNA1|p.Q1019Rfs*22|3|0.36|ENSG00000114554|chr3:127016548-127016548|C/-|frameshift_variant;ENSG00000114554|ENST00000393409|PLXNA1	ENST00000395811.9_1_17:17088208-17088493:+|nuORF	ENST00000395811.9_1_17:17088208-17088493:+|nuORF	MSMS	HCT116MG_D190212_S1	1	416.9809875488281	3	416.980483	1247.91962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.198	1	13.198	12.698	13.698	0								0	0	0	0.96208	1	4276	4276		0	0	1				36751	2425	23529	23650	35369	35369					0.30557538203333934
VLLLLNLRIL	10	Unmodified	_VLLLLNLRIL_					0	0	0		ENST00000514903.7_2_5:70858279-70858656:+|nuORF	ENST00000514903.7_2_5:70858279-70858656:+|nuORF	ENST00000514903.7_2_5:70858279-70858656:+|nuORF	MSMS	HCT116MG_D190212_S3	3	590.410888671875	2	590.413009	1178.81146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.68	1	57.405	56.905	57.905	-0.27434								0	0	0	0.96911	1	21925	21925		0.45834	0	1				36752	8525	23530	23651	35370	35370					0.22921166672722393
VLLLVLLNVT	10	Unmodified	_VLLLVLLNVT_					0	0	0		ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000466898.1_1_3:113658724-113658844:+|nuORF;ENST00000491038.1_1_3:113658724-113664322:+|nuORF;ENST00000479212.5_1_3:113627916-113664322:+|nuORF;nc|ENSG00000178075|Q8IYS0-2|GRAMD1C	ENSG00000178075|ENST00000358160|GRAMD1C	ENSG00000178075|ENST00000358160|GRAMD1C	MSMS	HCT116MG_D190212_S2	2	366.2486877441406	3	366.249521	1095.72673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.6246	1	6.4273	5.9273	6.9273	-0.19725								0	0	0	0.97061	1	2085	2085		0.12286	0	1				36753	5485	23531	23652	35371	35371					0.18269796136110017
VLLLVLPVSPP	11	Unmodified	_VLLLVLPVSPP_					0	0	0			REV__nc|ENSG00000197487|Q9UBC7-2|GALP	REV__nc|ENSG00000197487|Q9UBC7-2|GALP	MULTI-MSMS	HCT116MG_D190212_S1	1	574.3798217773438	2	573.878468	1145.74238	0.28494	0.00016352	2.4398	0.0014001	2.7247	0.0015636	574.3800438578816	58.537	0.50776	58.537	58.261	58.769	0					13	9	2	0	0	0	0.74191	1	22564	22564		0.35063	0	1	100010000	+		36754	14076	23532	23653	35372	35372					0.17534082653173755
VLLPHGPI	8	Unmodified	_VLLPHGPI_					0	0	0		ENST00000334690.10_1_4:184605887-184605989:+|nuORF	ENST00000334690.10_1_4:184605887-184605989:+|nuORF	ENST00000334690.10_1_4:184605887-184605989:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	423.265869140625	2	423.265813	844.517074	0.29991	0.00012694	0.017683	7.4847E-06	0.31759	0.00013443	423.265972500371	55.584	0.2603	55.272	55.142	55.402	-0.312					7	4	2	0	0	0	0.86388	1	20849	20849		2.8892	0	1	2497800			36755	7185	23533	23654	35373	35373					0.08859597973662403
VLLRRRLRWA	10	Unmodified	_VLLRRRLRWA_					0	0	0		ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	MSMS	HCT116MG_D190212_S3	3	669.935791015625	2	669.933297	1337.85204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.625	1	51.314	50.814	51.814	-0.31166								0	0	0	0.96911	1	19496	19496		0.45834	0	1				36756	4213	23534	23655	35374	35374					0.19662945835739265
VLLRTGYTQL	10	Unmodified	_VLLRTGYTQL_					0	0	0		ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;LATS1|p.F1039Lfs*19|1|0.19|ENSG00000131023|chr6:149662005-149662005|A/-|frameshift_variant	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	ENST00000441107.5_1_6:149982867-150018260:-|nuORF	MSMS	HCT116MG_D190212_S1	1	581.8873901367188	2	582.342781	1162.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.41	1	47.41	46.91	47.91	0								0	0	0	0.90892	1	18013	18013		13.906	5.7505	1				36757	3122	23535	23656	35375	35375					0.0961796294850501
VLLRWYQRRHD	11	Unmodified	_VLLRWYQRRHD_					0	0	0		ENST00000379847.3_9:32573035-32573095:-|nuORF	ENST00000379847.3_9:32573035-32573095:-|nuORF	ENST00000379847.3_9:32573035-32573095:-|nuORF	MSMS	HCT116MG_D190212_S4	4	771.4248657226562	2	771.426033	1540.83751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.269	1	44.896	44.396	45.396	-0.37266								0	0	0	0.95113	1	16693	16693		5.7319	4.25	1				36758	7558	23536	23657	35376	35376					0.08872828896915053
VLLSKTKA	8	Unmodified	_VLLSKTKA_					0	0	0			REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	MSMS	HCT116MG_D190212_S3	3	430.2830505371094	2	430.284203	858.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.966	1	53.667	53.167	54.167	-0.29946								0	0	0	0.8837	1	20438	20438		0.69038	0	1		+		36759	13523	23537	23658	35377	35377					0.11891849799553711
VLLTFKIFLVI	11	Unmodified	_VLLTFKIFLVI_					0	0	0		ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant;ADGRG2|p.E516*|1|0.54|ENSG00000173698|chrX:19008000-19008001|-/A|frameshift_variant;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	ADGRG2|p.F122Lfs*21|2|0.28|ENSG00000173698|chrX:19028231-19028231|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	435.9561462402344	3	435.956337	1304.84718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.568	1	11.568	11.068	12.068	0								0	0	0	0.96208	1	3652	3652		0	0	1				36760	59	23538	23659	35378	35378					0.20695204129719968
VLLTSVTL	8	Unmodified	_VLLTSVTL_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1;SLC38A1|p.F232Sfs*2|1|0.39|ENSG00000111371|chr12:46204542-46204542|A/-|frameshift_variant;SLC38A1|p.K136Sfs*14|1|0.29|ENSG00000111371|chr12:46207603-46207603|T/-|frameshift_variant	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MSMS	HCT116MG_D190212_S2	2	423.1875915527344	2	423.270761	844.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.342	1	25.98	25.48	26.48	-0.36164								0	0	0	0.8837	1	9526	9526		2.8892	0	1				36761	2291	23539	23660	35379	35379					0.09848741188375243
VLLVGGLP	8	Unmodified	_VLLVGGLP_					0	0	0		nc|ENSG00000118197|Q5T1V6-2|DDX59;ENSG00000118197|ENST00000331314|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-MSMS	HCT116MG_D190212_S3	3	767.504150390625	1	767.502552	766.495276	0.63285	0.00048571	1.024	0.00078595	1.6569	0.0012717	767.5033327976982	55.506	0.16406	55.214	55.136	55.3	-0.2918					4	2	2	0	0	0	0.68942	1	21084	21084		24.21	0	1	2529400			36762	2601	23540	23661	35380	35380					0.10268793225077388
VLLVVKLLL	9	Unmodified	_VLLVVKLLL_					0	0	0		ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	MSMS	HCT116MG_D190212_S1	1	505.37481689453125	2	505.372821	1008.73109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.693	1	14.693	14.193	15.193	0								0	0	0	0.77008	1	4828	4828		0.6015	0	1				36763	8788	23541	23662	35381	35381					0.227073053497179
VLMCDSHLVGL	11	Unmodified	_VLMCDSHLVGL_					0	0	0		ENST00000467100.1_1_9:133456423-133456570:+|nuORF	ENST00000467100.1_1_9:133456423-133456570:+|nuORF	ENST00000467100.1_1_9:133456423-133456570:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	594.3038330078125	2	593.801577	1185.5886	0.89522	0.00053158	-0.24286	-0.00014421	0.65236	0.00038737	593.8014477627685	25.936	0.72866	25.646	25.36	26.088	-0.29022					31	13	3	0	0	0	0.73536	1	9355	9355		8.7454	0.58988	1	17847000			36764	8112	23542	23663	35382	35382					0.0032298155369971937
VLMFFLILV	9	Unmodified	_VLMFFLILV_					0	0	0			REV__ENSG00000188782|ENST00000456354|CATSPER4	REV__ENSG00000188782|ENST00000456354|CATSPER4	MULTI-SECPEP	HCT116MG_D190212_S2	2	547.77978515625	2	547.837757	1093.66096	0.53007	0.00029039	3.8923	0.0021324	4.4224	0.0024227	547.8393452892802	56.035	0.25538	55.851	55.693	55.948	-0.18381					6	4	2	0	0	0	0.18042	1	21626	21626		28.173	13.592	1	7710300	+		36765	13972	23543	23664	35383	35383					0.11787683689590267
VLMFFLILV	9	Unmodified	_VLMFFLILV_					0	0	0			REV__ENSG00000188782|ENST00000456354|CATSPER4	REV__ENSG00000188782|ENST00000456354|CATSPER4	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	547.837757	1093.66096	0.5304	0.00029057	4.0309	0.0022083	4.5613	0.0024989	547.8397342894561	56.146	0.20901	55.858	55.727	55.936	-0.28773	0.0024763	0.00010775	NaN	28.173	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1862200	+		36766	13972	23543	23664							0.11787683689590267
VLMFFLILV	9	Unmodified	_VLMFFLILV_					0	0	0			REV__ENSG00000188782|ENST00000456354|CATSPER4	REV__ENSG00000188782|ENST00000456354|CATSPER4	MULTI-MATCH	HCT116MG_D190212_S4	4		2	547.837757	1093.66096	0.68901	0.00037746	3.3972	0.0018611	4.0862	0.0022386	547.8394410194014	56.164	0.21333	55.857	55.723	55.937	-0.30626	0.0018547	-0.00058659	NaN	28.173	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1643000	+		36767	13972	23543	23664							0.11787683689590267
VLMQGQNIR	9	Unmodified	_VLMQGQNIR_					0	0	0			REV__SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant	REV__SYNJ2|p.P1225Hfs*19|1|0.23|ENSG00000078269|chr6:158093030-158093030|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	529.790771484375	2	529.792401	1057.57025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.888	1	40.511	40.011	41.011	-0.37732								0	0	0	0.76694	1	15017	15017		11.64	1.5664	1		+		36768	10835	23544	23665	35384	35384					0.04376607694007362
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	531.8009643554688	2	531.299193	1060.58383	0.20469	0.00010875	-0.69891	-0.00037133	-0.49421	-0.00026258	531.2988044394353	49.776	0.30995	49.776	49.543	49.853	0					7	5	2	0	0	0	0.21258	1	18993	18993		39.95	7.6442	1	21228000			36769	2435	23545	23666	35385	35385					0.05596420682581993
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.P1229Qfs*2|1|0.18|ENSG00000114867|chr3:184327606-184327606|C/-|frameshift_variant	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S2	2		2	531.299193	1060.58383	0.090727	4.8203E-05	-0.10303	-5.4741E-05	-0.012305	-6.5378E-06	531.2992898700451	49.927	0.35727	49.763	49.585	49.942	-0.16369	-0.0061722	0.00032042	NaN	39.95	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90597000			36770	2435	23545	23666							0.05596420682581993
VLMTQQPRPVL	11	Unmodified	_VLMTQQPRPVL_					0	0	0		ENST00000557912.1_1_15:34634171-34635317:-|nuORF;ENSG00000182117|ENST00000328848|NOP10	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MSMS	HCT116MG_D190212_S2	2	641.3721313476562	2	641.371015	1280.72748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.896	1	41.828	41.328	42.328	-0.068199								0	0	0	0.85321	1	15844	15844		26.021	7.6476	1				36771	5656	23546	23667	35386	35386					0.09834267513542727
VLNEYFHNV	9	Unmodified	_VLNEYFHNV_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	HCT116MG_D190212_S2	2	567.782470703125	2	567.782556	1133.55056	0.32986	0.00018729	-0.04522	-2.5675E-05	0.28464	0.00016161	567.7823839345735	43.458	0.361	43.384	43.2	43.561	-0.073372					13	6	3	0	0	0	0.011082	1	16482	16482		110.67	60.742	1	31343000			36772	1011	23547	23668	35387	35387					-0.01087445045095592
VLNKHKKI	8	Unmodified	_VLNKHKKI_					0	0	0		ENSG00000269067|ENST00000594710|ZNF728	ENSG00000269067|ENST00000594710|ZNF728	ENSG00000269067|ENST00000594710|ZNF728	MSMS	HCT116MG_D190212_S3	3	490.3222351074219	2	490.324194	978.633835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.386	1	35.087	34.587	35.587	-0.29922								0	0	0	0.8837	1	13060	13060		2.5775	0	1				36773	6654	23548	23669	35388	35388					0.1436633619340455
VLNLRLQLA	9	Unmodified	_VLNLRLQLA_					0	0	0			REV__MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant	REV__MED12L|p.T1760Pfs*44|1|0.42|ENSG00000144893|chr3:151388100-151388100|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	520.3331909179688	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.432	1	36.131	35.631	36.631	-0.30113								0	0	0	0.76967	1	13461	13461		2.0598	0.21551	1		+		36774	12434	23549	23670	35389	35389					0.13718301502285613
VLNPETTVV	9	Unmodified	_VLNPETTVV_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	HCT116MG_D190212_S2	2	971.5421142578125	1	971.540788	970.533512	0.70416	0.00068412	0.31486	0.0003059	1.019	0.00099002	971.5410820372557	40.908	0.31066	40.838	40.673	40.984	-0.069626					7	5	2	0	0	0	0.020181	1	15478	15478		96.285	34.927	1	14993000			36775	3589	23550	23671	35390	35390					0.0470663434908829
VLNPGRGR	8	Unmodified	_VLNPGRGR_					0	0	0			REV__SLC25A36|p.L84R|1|0.07|ENSG00000114120|chr3:140959507-140959507|T/G|missense_variant	REV__SLC25A36|p.L84R|1|0.07|ENSG00000114120|chr3:140959507-140959507|T/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	868.5130004882812	1	868.51116	867.503883	1.1588	0.0010064	0.18017	0.00015648	1.339	0.0011629	868.511121993618	47.727	0.72054	47.595	47.222	47.943	-0.13281					34	13	4	0	0	0	0.82475	1	18166	18166		8.5933	0.68312	1	611860000	+		36776	17523	23551	23672	35391	35391					0.06483159914284897
VLNPGRGR	8	Unmodified	_VLNPGRGR_					0	0	0			REV__SLC25A36|p.L84R|1|0.07|ENSG00000114120|chr3:140959507-140959507|T/G|missense_variant	REV__SLC25A36|p.L84R|1|0.07|ENSG00000114120|chr3:140959507-140959507|T/G|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	868.51116	867.503883	1.1588	0.0010064	0.18017	0.00015648	1.339	0.0011629	868.511121993618	47.727	0.72054	47.595	47.222	47.943	-0.13281	0.16598	-6.7237E-05	NaN	8.5933	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611860000	+		36777	17523	23551	23672							0.06483159914284897
VLNSLFLIP	9	Unmodified	_VLNSLFLIP_					0	0	0			REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	MSMS	HCT116MG_D190212_S4	4	508.31231689453125	2	508.312961	1014.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.382	1	32.999	32.499	33.499	-0.38223								0	0	0	0.76694	1	12151	12151		11.64	0	1		+		36778	12365	23552	23673	35392	35392					0.10464692005132292
VLNTPLSV	8	Unmodified	_VLNTPLSV_					0	0	0			REV__ENST00000492204.1_1_10:103552448-103553834:-|nuORF	REV__ENST00000492204.1_1_10:103552448-103553834:-|nuORF	MSMS	HCT116MG_D190212_S4	4	421.75152587890625	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.395	1	43.02	42.52	43.52	-0.37433								0	0	0	0.8837	1	15950	15950		2.3027	0	1		+		36779	16050	23553	23674	35393	35393					0.06383284011519663
VLNVRGGH	8	Unmodified	_VLNVRGGH_					0	0	0			REV__nc|ENSG00000233013|P0CG42|FAM157B	REV__nc|ENSG00000233013|P0CG42|FAM157B	MULTI-MSMS	HCT116MG_D190212_S1	1	851.4862060546875	1	851.484611	850.477334	0.76234	0.00064912	0.68564	0.00058381	1.448	0.0012329	851.4850859819044	47.295	0.43077	47.295	47.01	47.441	0					17	8	3	0	0	0	0.85329	1	17950	17950		4.756	0.81161	1	124380000	+		36780	17303	23554	23675	35394	35394					0.046114710229517186
VLNYRSLAREK	11	Unmodified	_VLNYRSLAREK_					0	0	0			REV__nc|ENSG00000073536|Q9NVX2-2|NLE1	REV__nc|ENSG00000073536|Q9NVX2-2|NLE1	MSMS	HCT116MG_D190212_S1	1	450.2619934082031	3	450.261371	1347.76228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.596	1	48.596	48.096	49.096	0								0	0	0	0.95273	1	18495	18495		2.2527	0	1		+		36781	10787	23555	23676	35395	35395					0.10231226645851166
VLPGKKKKKT	10	Unmodified	_VLPGKKKKKT_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MSMS	HCT116MG_D190212_S3	3	376.2593994140625	3	376.260531	1125.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.342	1	55.05	54.55	55.55	-0.2918								0	0	0	0.97061	1	20991	20991		0.12286	0.12286	1				36782	4097	23556	23677	35396	35396					0.20191422978814444
VLPGKKKKKT	10	Unmodified	_VLPGKKKKKT_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MSMS	HCT116MG_D190212_S3	3	376.2591857910156	3	376.260531	1125.75976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.187	1	59.934	59.434	60.434	-0.25233								0	0	0	0.97061	1	22940	22940		0.12286	0.12286	1				36783	4097	23556	23677	35397	35397					0.20191422978814444
VLPHFKLAQKR	11	Unmodified	_VLPHFKLAQKR_					0	0	0			REV__ANKUB1|p.Q448Pfs*25|1|0.41|ENSG00000206199|chr3:149767319-149767320|-/G|frameshift_variant	REV__ANKUB1|p.Q448Pfs*25|1|0.41|ENSG00000206199|chr3:149767319-149767320|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	668.9146118164062	2	668.914239	1335.81392	0.23504	0.00015722	0.22321	0.00014931	0.45825	0.00030653	668.9141928146197	49.272	0.35419	49.118	48.935	49.289	-0.15406					13	6	3	0	0	0	0.70991	1	18851	18851		18.146	1.0335	1	174440000	+		36784	9949	23557	23678	35398	35398					0.15945015130364482
VLPHFKLAQKR	11	Unmodified	_VLPHFKLAQKR_					0	0	0			REV__ANKUB1|p.Q448Pfs*25|1|0.41|ENSG00000206199|chr3:149767319-149767320|-/G|frameshift_variant	REV__ANKUB1|p.Q448Pfs*25|1|0.41|ENSG00000206199|chr3:149767319-149767320|-/G|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	668.914239	1335.81392	0.67937	0.00045444	-0.33886	-0.00022667	0.34051	0.00022777	668.9137732733843	49.228	0.25833	49.228	49.079	49.337	0	0.055139	-0.00044919	NaN	18.146	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29861000	+		36785	9949	23557	23678							0.15945015130364482
VLPIQSLDQK	10	Unmodified	_VLPIQSLDQK_					0	0	0		ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2;MCTP2|p.L450Sfs*29|1|0.08|ENSG00000140563|chr15:94367650-94367651|-/AGTA|frameshift_variant	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	MSMS	HCT116MG_D190212_S1	1	380.8905944824219	3	380.892284	1139.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2896	1	7.2896	6.7896	7.7896	0								0	0	0	0.97045	1	2200	2200		0.15932	0	1				36786	3676	23558	23679	35399	35399					0.09078256711586619
VLPKMLKY	8	Unmodified	_VLPKMLKY_					0	0	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	496.3043518066406	2	496.304081	990.59361	0.47503	0.00023576	-0.52268	-0.00025941	-0.047649	-2.3648E-05	496.30381044413554	44.288	0.98834	43.98	43.238	44.227	-0.30759					27	18	2	0	0	0	0.84415	1	16387	16387		6.3541	0	1	5369800	+		36787	10396	23559	23680	35400	35400					0.0979365347861858
VLPKMLKY	8	Unmodified	_VLPKMLKY_					0	0	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	496.304081	990.59361	0.47503	0.00023576	-0.52268	-0.00025941	-0.047649	-2.3648E-05	496.30381044413554	44.288	0.98834	43.98	43.238	44.227	-0.30759	0.04149	-0.00024153	NaN	6.3541	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5369800	+		36788	10396	23559	23680							0.0979365347861858
VLPKMLKY	8	Unmodified	_VLPKMLKY_					0	0	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	496.304081	990.59361	0.39166	0.00019438	-0.2083	-0.00010338	0.18336	9.1003E-05	496.3038884369885	44.271	1.1711	43.897	43.115	44.286	-0.37373	-0.04149	7.0528E-05	NaN	6.3541	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9737900	+		36789	10396	23559	23680							0.0979365347861858
VLPLLLEQF	9	Unmodified	_VLPLLLEQF_					0	0	0		nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	MSMS	HCT116MG_D190212_S4	4	536.327880859375	2	536.326068	1070.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.538	1	31.168	30.668	31.668	-0.37026								0	0	0	0.76973	1	11450	11450		1.8442	0	1				36790	4243	23560	23681	35401	35401					0.10508961176606135
VLPLVRLLL	9	Unmodified	_VLPLVRLLL_					0	0	0		RASA2|p.N656Tfs*21|4|0.34|ENSG00000155903|chr3:141607706-141607706|A/-|frameshift_variant;ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2	RASA2|p.N656Tfs*21|4|0.34|ENSG00000155903|chr3:141607706-141607706|A/-|frameshift_variant	RASA2|p.N656Tfs*21|4|0.34|ENSG00000155903|chr3:141607706-141607706|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	518.3703002929688	2	518.36807	1034.72159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.362	1	52.055	51.555	52.555	-0.3069								0	0	0	0.7696	1	19793	19793		2.3027	0	1				36791	4268	23561	23682	35402	35402					0.20561537064168078
VLPNFLPYNV	10	Unmodified	_VLPNFLPYNV_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	HCT116MG_D190212_S2	2	588.3272705078125	2	588.326599	1174.63865	0.64432	0.00037907	0.30215	0.00017776	0.94646	0.00055683	588.8281524601208	57.464	0.20807	57.289	57.159	57.367	-0.17494					6	3	2	0	0	0	0.042873	1	22204	22204		92.491	63.997	1	10613000			36792	3913	23562	23683	35403	35403					0.05831175545495171
VLPNVALN	8	Unmodified	_VLPNVALN_					0	0	0		ENSG00000197757|ENST00000243108|HOXC6	ENSG00000197757|ENST00000243108|HOXC6	ENSG00000197757|ENST00000243108|HOXC6	MSMS	HCT116MG_D190212_S4	4	420.2528991699219	2	420.252903	838.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.541	1	61.284	60.784	61.784	-0.25684								0	0	0	0.8837	1	23219	23219		2.5775	0	1				36793	6172	23563	23684	35404	35404					0.06554703731364953
VLPSIVILDL	10	Unmodified	_VLPSIVILDL_					0	0	0		nc|ENSG00000157214|Q8NFT2-2|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	nc|ENSG00000157214|Q8NFT2-2|STEAP2	MSMS	HCT116MG_D190212_S1	1	361.233642578125	3	361.233759	1080.67945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.744	1	34.744	34.244	35.244	0								0	0	0	0.96263	1	12901	12901		1.9064	0	1				36794	9507	23564	23685	35405	35405					0.1423351686512433
VLPTCPWLLRR	11	Unmodified	_VLPTCPWLLRR_					0	0	0		ENST00000394936.7_1_10:73576347-73576458:-|nuORF	ENST00000394936.7_1_10:73576347-73576458:-|nuORF	ENST00000394936.7_1_10:73576347-73576458:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	677.39599609375	2	677.394825	1352.7751	0.45693	0.00030952	0.80166	0.00054304	1.2586	0.00085257	677.3951871013426	52.085	1.0806	51.901	51.27	52.351	-0.18368					32	20	2	0	0	0	0.74191	1	19979	19979		5.2969	5.2969	1	21989000			36795	7639	23565	23686	35406	35406					0.11281966504361662
VLPVKKPKMEH	11	Unmodified	_VLPVKKPKMEH_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MSMS	HCT116MG_D190212_S4	4	653.285400390625	2	653.389208	1304.76386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.308	1	47.94	47.44	48.44	-0.36728								0	0	0	0.94924	1	17887	17887		6.7232	0	1				36796	5510	23566	23687	35407	35407					0.12367144410222863
VLPVLSPLPL	10	Unmodified	_VLPVLSPLPL_					0	0	0		ENST00000325042.2_1_7:22765745-22766153:-|nuORF	ENST00000325042.2_1_7:22765745-22766153:-|nuORF	ENST00000325042.2_1_7:22765745-22766153:-|nuORF	MSMS	HCT116MG_D190212_S4	4	524.273681640625	2	524.344261	1046.67397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.813	1	42.438	41.938	42.938	-0.37493								0	0	0	0.93576	1	15749	15749		7.9102	0	1				36797	7128	23567	23688	35408	35408					0.15249838073327737
VLQASFRGERV	11	Unmodified	_VLQASFRGERV_					0	0	0		ASPM|p.V2180E|1|0.28|ENSG00000066279|chr1:197102712-197102712|A/T|missense_variant	ASPM|p.V2180E|1|0.28|ENSG00000066279|chr1:197102712-197102712|A/T|missense_variant	ASPM|p.V2180E|1|0.28|ENSG00000066279|chr1:197102712-197102712|A/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	631.3538818359375	2	631.354211	1260.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.201	1	47.885	47.385	48.385	-0.31596								0	0	0	0.95196	1	18122	18122		5.2969	0	1				36798	203	23568	23689	35409	35409					0.0739498206596636
VLQEGSLPE	9	Unmodified	_VLQEGSLPE_					0	0	0			REV__ENSG00000186871|ENST00000334463|ERCC6L	REV__ENSG00000186871|ENST00000334463|ERCC6L	MULTI-SECPEP	HCT116MG_D190212_S2	2	971.57763671875	1	971.504403	970.497126	0.72647	0.00070577	0.8673	0.00084258	1.5938	0.0015484	971.5055866263137	55.986	0.15297	55.8	55.691	55.844	-0.18565					4	2	2	0	0	0	0.17767	1	21559	21559		32.305	0	1	3176400	+		36799	13902	23569	23690	35410	35410					0.010697574523760522
VLQETVIN	8	Unmodified	_VLQETVIN_					0	0	0			REV__ENSG00000069248|ENST00000261396|NUP133	REV__ENSG00000069248|ENST00000261396|NUP133	MSMS	HCT116MG_D190212_S1	1	458.29766845703125	2	458.260925	914.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.336	1	35.336	34.836	35.836	0								0	0	0	0.8837	1	13141	13141		14.582	0	1		+		36800	10744	23570	23691	35411	35411					0.04662365177603078
VLQFPCRQRPL	11	Unmodified	_VLQFPCRQRPL_					0	0	0		ENSG00000275572|ENST00000614228|GRIFIN	ENSG00000275572|ENST00000614228|GRIFIN	ENSG00000275572|ENST00000614228|GRIFIN	MSMS	HCT116MG_D190212_S3	3	678.8831787109375	2	678.882081	1355.74961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.789	1	40.488	39.988	40.988	-0.30161								0	0	0	0.95023	1	15154	15154		6.2058	1.3088	1				36801	6680	23571	23692	35412	35412					0.08596491981938925
VLQMQGDGDPG	11	Unmodified	_VLQMQGDGDPG_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	HCT116MG_D190212_S2	2	558.7535400390625	2	558.753138	1115.49172	0.5505	0.0003076	-0.94044	-0.00052548	-0.38994	-0.00021788	558.7529670634929	43.844	0.41111	43.765	43.556	43.967	-0.078373					12	7	3	0	0	0	0.70691	1	16650	16650		19.257	2.1441	1	25113000	+		36802	10769	23572	23693	35413	35413					-0.061402894017419385
VLQQKQVQP	9	Unmodified	_VLQQKQVQP_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;CIZ1|p.T876Hfs*5|1|0.4|ENSG00000148337|chr9:128166268-128166268|T/-|frameshift_variant;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MSMS	HCT116MG_D190212_S1	1	534.3123779296875	2	534.314023	1066.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.891	1	29.891	29.391	30.391	0								0	0	0	0.71969	1	10942	10942		18.135	1.9859	1				36803	466	23573	23694	35414	35414					0.08285120742948493
VLQVRTGKF	9	Unmodified	_VLQVRTGKF_					0	0	0		LHPP|p.A230V|1|0.23|ENSG00000107902|chr10:124517244-124517244|C/T|missense_variant	LHPP|p.A230V|1|0.23|ENSG00000107902|chr10:124517244-124517244|C/T|missense_variant	LHPP|p.A230V|1|0.23|ENSG00000107902|chr10:124517244-124517244|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	524.2772216796875	2	524.319109	1046.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.861	1	56.861	56.361	57.361	0								0	0	0	0.76777	1	21869	21869		8.7454	1.4562	1				36804	9296	23574	23695	35415	35415					0.10221728468172842
VLRKLVKII	9	Unmodified	_VLRKLVKII_					0	0	0			REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1	REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	541.1591186523438	2	541.394619	1080.77469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.245	1	61.996	61.496	62.496	-0.24919								0	0	0	0.77025	1	23501	23501		0	0	1		+		36805	17923	23575	23696	35416	35416					0.23752914846841122
VLRKLVKIII	10	Unmodified	_VLRKLVKIII_					0	0	0			REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1	REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	597.9389038085938	2	597.936651	1193.85875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.961	1	32.676	32.176	33.176	-0.28511								0	0	0	0.97116	1	12100	12100		0	0	1		+		36806	17923	23576	23697	35417	35417					0.26957445943753555
VLRLPPRVR	9	Unmodified	_VLRLPPRVR_					0	0	0		ENST00000293217.9_3_17:73975210-73975420:-|nuORF	ENST00000293217.9_3_17:73975210-73975420:-|nuORF	ENST00000293217.9_3_17:73975210-73975420:-|nuORF	MSMS	HCT116MG_D190212_S4	4	369.2481689453125	3	369.248737	1104.72438	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.181	1	50.828	50.328	51.328	-0.35313								0	0	0	0.77018	1	19040	19040		0.26902	0	1				36807	6963	23577	23698	35418	35418					0.17620805241676862
VLRLVVPRRP	10	Unmodified	_VLRLVVPRRP_					0	0	0		ENST00000462833.5_1_3:123167964-123168408:-|nuORF	ENST00000462833.5_1_3:123167964-123168408:-|nuORF	ENST00000462833.5_1_3:123167964-123168408:-|nuORF	MSMS	HCT116MG_D190212_S2	2	402.2692565917969	3	402.271542	1203.7928	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.397	1	30.112	29.612	30.612	-0.28453								0	0	0	0.97045	1	11173	11173		0.15932	0	1				36808	8068	23578	23699	35419	35419					0.1990504982152288
VLRPAPSAR	9	Unmodified	_VLRPAPSAR_					0	0	0			REV__ENST00000474289.6_1_6:127664143-127664416:-|nuORF	REV__ENST00000474289.6_1_6:127664143-127664416:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	483.1476745605469	2	483.795801	965.577048	0.34467	0.00016675	0.2283	0.00011045	0.57296	0.0002772	483.7957993447573	35.826	0.31187	35.826	35.682	35.993	0					8	5	2	0	0	0	0.25004	1	13370	13370		3.5965	1.5367	1	4167400	+		36809	15897	23579	23700	35420	35420					0.09288288636878406
VLRRGYLQL	9	Unmodified	_VLRRGYLQL_					0	0	0		nc|ENSG00000205176|Q8IX06|REXO1L1P	nc|ENSG00000205176|Q8IX06|REXO1L1P	nc|ENSG00000205176|Q8IX06|REXO1L1P	MSMS	HCT116MG_D190212_S1	1	373.273681640625	3	373.232864	1116.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.732	1	58.732	58.232	59.232	0								0	0	0	0.76995	1	22633	22633		1.0715	0	1				36810	9612	23580	23701	35421	35421					0.12309106250836521
VLRRHKLLL	9	Unmodified	_VLRRHKLLL_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MSMS	HCT116MG_D190212_S3	3	383.2648620605469	3	383.264387	1146.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.283	1	57.004	56.504	57.504	-0.27913								0	0	0	0.77018	1	21766	21766		0.26902	0	1		+		36811	12053	23581	23702	35422	35422					0.2038166479285337
VLRRLVLWFFL	11	Unmodified	_VLRRLVLWFFL_					0	0	0			REV__ENSG00000075790|ENST00000005259|BCAP29	REV__ENSG00000075790|ENST00000005259|BCAP29	MULTI-MSMS	HCT116MG_D190212_S4	4	487.9754333496094	3	487.974614	1460.90201	0.068812	3.3578E-05	0.7223	0.00035246	0.79111	0.00038604	487.97498043858906	56.793	0.20857	56.493	56.363	56.571	-0.3004					6	3	2	0	0	0	0.74191	1	21318	21318		0.094841	0.094841	1	2521800	+		36812	10813	23582	23703	35423	35423					0.1899963572100205
VLRRQHSKL	9	Unmodified	_VLRRQHSKL_					0	0	0		nc|ENSG00000214021|Q9Y4R7-5|TTLL3;nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3	nc|ENSG00000214021|Q9Y4R7-5|TTLL3	nc|ENSG00000214021|Q9Y4R7-5|TTLL3	MULTI-MSMS	HCT116MG_D190212_S1	1	379.5713195800781	3	379.57188	1135.69381	-0.014173	-5.3795E-06	-1.2736	-0.00048342	-1.2878	-0.0004888	379.57133726117655	53.899	0.20385	53.899	53.771	53.975	0					6	3	2	0	0	0	0.75853	1	20665	20665		1.1933	0	1	36395000			36813	6424	23583	23704	35424	35424					0.1313902685665198
VLRRQHSKL	9	Unmodified	_VLRRQHSKL_					0	0	0		nc|ENSG00000214021|Q9Y4R7-5|TTLL3;nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3	nc|ENSG00000214021|Q9Y4R7-5|TTLL3	nc|ENSG00000214021|Q9Y4R7-5|TTLL3	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	379.57188	1135.69381	-0.014173	-5.3795E-06	-1.2736	-0.00048342	-1.2878	-0.0004888	379.57133726117655	53.899	0.20385	53.899	53.771	53.975	0	0	0	NaN	1.1933	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36395000			36814	6424	23583	23704							0.1313902685665198
VLRTKEAF	8	Unmodified	_VLRTKEAF_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	482.2845764160156	2	482.284734	962.554916	0.16241	7.8326E-05	0.56212	0.0002711	0.72453	0.00034943	482.2853429352703	43.512	0.19057	43.138	43.076	43.267	-0.37433					5	3	2	0	0	0	0.55794	1	16033	16033		36.044	0	1	2632600			36815	4303	23584	23705	35425	35425					0.07214064168454115
VLRVWVRTT	9	Unmodified	_VLRVWVRTT_					0	0	0		F2|p.L15Wfs*106|1|0.16|ENSG00000180210|chr11:46719276-46719276|C/-|frameshift_variant	F2|p.L15Wfs*106|1|0.16|ENSG00000180210|chr11:46719276-46719276|C/-|frameshift_variant	F2|p.L15Wfs*106|1|0.16|ENSG00000180210|chr11:46719276-46719276|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	377.233154296875	3	377.232864	1128.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.178	1	40.801	40.301	41.301	-0.37732								0	0	0	0.76998	1	15134	15134		0.96228	0	1				36816	9146	23585	23706	35426	35426					0.11757106250843208
VLSAEQNR	8	Unmodified	_VLSAEQNR_					0	0	0			REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF	REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	458.79290771484375	2	458.745973	915.477394	0.22027	0.00010105	1.5795	0.00072457	1.7997	0.00082562	458.7465154034161	57.79	0.261	57.615	57.469	57.73	-0.17493					7	4	2	0	0	0	0.33185	1	22322	22322		4.756	0.42677	1	4333300	+		36817	15119	23586	23707	35427	35427					0.016274262322781397
VLSEITTF	8	Unmodified	_VLSEITTF_					0	0	0		ENST00000261170.4_1_12:14765775-14765925:-|nuORF	ENST00000261170.4_1_12:14765775-14765925:-|nuORF	ENST00000261170.4_1_12:14765775-14765925:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	909.4937133789062	1	909.492775	908.485499	0.69111	0.00062856	0.20179	0.00018353	0.8929	0.00081209	909.4931624363613	49.317	0.31638	49.001	48.763	49.079	-0.31596					8	5	2	0	0	0	0.25164	1	18566	18566		63.563	0	1	4277500			36818	6845	23587	23708	35428	35428					0.02759560429035446
VLSGKGIS	8	Unmodified	_VLSGKGIS_					0	0	0		MS4A12|p.A195V|1|0.25|ENSG00000071203|chr11:60503813-60503813|C/T|missense_variant;nc|ENSG00000071203|Q9NXJ0-2|MS4A12;ENSG00000071203|ENST00000016913|MS4A12	MS4A12|p.A195V|1|0.25|ENSG00000071203|chr11:60503813-60503813|C/T|missense_variant	MS4A12|p.A195V|1|0.25|ENSG00000071203|chr11:60503813-60503813|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	380.7317199707031	2	380.731803	759.449054	-0.11542	-4.3944E-05	-0.17119	-6.5177E-05	-0.28661	-0.00010912	380.7316913624533	23.194	0.26065	23.154	22.979	23.239	-0.03968					7	4	2	0	0	0	0.40176	1	8186	8186		49.933	2.1843	1	3813200			36819	1251	23588	23709	35429	35429					0.05970728322984087
VLSGKVSA	8	Unmodified	_VLSGKVSA_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	HCT116MG_D190212_S2	2	760.4569091796875	1	760.45633	759.449054	1.0363	0.00078803	-0.1584	-0.00012045	0.87786	0.00066758	760.4560417148234	23.76	0.26032	23.377	23.195	23.456	-0.38324					6	4	2	0	0	0	0.12475	1	8492	8492		89.401	22.944	1	21091000			36820	5377	23589	23710	35430	35430					0.05970728322984087
VLSHMTRKKIF	11	Unmodified	_VLSHMTRKKIF_					0	0	0		ENST00000254250.7_1_8:42693388-42694372:-|nuORF	ENST00000254250.7_1_8:42693388-42694372:-|nuORF	ENST00000254250.7_1_8:42693388-42694372:-|nuORF	MSMS	HCT116MG_D190212_S1	1	680.4008178710938	2	680.400107	1358.78566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.682	1	45.682	45.182	46.182	0								0	0	0	0.95521	1	17314	17314		3.5965	0	1				36821	6810	23590	23711	35431	35431					0.12061949158783136
VLSKGGSI	8	Unmodified	_VLSKGGSI_					0	0	0			REV__nc|ENSG00000182366|P0C7U9|FAM87A	REV__nc|ENSG00000182366|P0C7U9|FAM87A	MULTI-MSMS	HCT116MG_D190212_S2	2	380.7317199707031	2	380.731803	759.449054	-0.09853	-3.7514E-05	0.16801	6.3966E-05	0.069478	2.6453E-05	380.7317588535686	23.76	0.26032	23.377	23.195	23.456	-0.38324					7	4	2	0	0	0	0.557	1	8505	8505		36.127	0	1	21752000	+		36822	17236	23591	23712	35432	35432					0.05970728322984087
VLSKVDVI	8	Unmodified	_VLSKVDVI_					0	0	0		SSRP1|p.A189V|1|0.13|ENSG00000149136|chr11:57332827-57332827|G/A|missense_variant	SSRP1|p.A189V|1|0.13|ENSG00000149136|chr11:57332827-57332827|G/A|missense_variant	SSRP1|p.A189V|1|0.13|ENSG00000149136|chr11:57332827-57332827|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	436.7746276855469	2	436.776211	871.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.175	1	48.81	48.31	49.31	-0.365								0	0	0	0.8837	1	18231	18231		11.114	0	1				36823	18237	23592	23713	35433	35433					0.09696143562666748
VLSLSSAL	8	Unmodified	_VLSLSSAL_					0	0	0		ENST00000375215.3_1_17:73629550-73630090:+|nuORF	ENST00000375215.3_1_17:73629550-73630090:+|nuORF	ENST00000375215.3_1_17:73629550-73630090:+|nuORF	MSMS	HCT116MG_D190212_S1	1	395.5253601074219	2	395.239461	788.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.101	1	26.101	25.601	26.601	0								0	0	0	0.8837	1	9417	9417		5.2307	0	1				36824	7507	23593	23714	35434	35434					0.061675951201777934
VLSNQVLY	8	Unmodified	_VLSNQVLY_					0	0	0			REV__ENST00000274569.8_1_5:148748707-148748803:+|nuORF	REV__ENST00000274569.8_1_5:148748707-148748803:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	468.2635192871094	2	468.263468	934.512382	0.1481	6.9349E-05	0.22421	0.00010499	0.37231	0.00017434	468.26352288124417	32.302	0.2598	32.072	31.942	32.202	-0.23009					8	4	2	0	0	0	0.21275	1	11976	11976		71.134	5.8986	1	20559000	+		36825	14705	23594	23715	35435	35435					0.042506690402206004
VLSSGARVLV	10	Unmodified	_VLSSGARVLV_					0	0	0		ENSG00000083807|ENST00000263093|SLC27A5	ENSG00000083807|ENST00000263093|SLC27A5	ENSG00000083807|ENST00000263093|SLC27A5	MULTI-MSMS	HCT116MG_D190212_S2	2	500.8112487792969	2	500.811116	999.60768	0.58696	0.00029396	-0.13982	-7.0022E-05	0.44714	0.00022393	500.81112510628327	31.939	0.25766	31.709	31.529	31.787	-0.23009					7	4	2	0	0	0	0.26262	1	11816	11816		53.833	8.1332	1	33328000			36826	1436	23595	23716	35436	35436					0.10786022231275183
VLSVIKGKKI	10	Unmodified	_VLSVIKGKKI_					0	0	0			REV__SDCBP2|p.V206M|2|0.21|ENSG00000125775|chr20:1312453-1312453|C/T|missense_variant	REV__SDCBP2|p.V206M|2|0.21|ENSG00000125775|chr20:1312453-1312453|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	362.25360107421875	3	362.253265	1083.73797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.248	1	54.248	53.748	54.748	0								0	0	0	0.97116	1	20797	20797		0	0	1		+		36827	11818	23596	23717	35437	35437					0.19944618230283595
VLSVIKGKKI	10	Unmodified	_VLSVIKGKKI_					0	0	0			REV__SDCBP2|p.V206M|2|0.21|ENSG00000125775|chr20:1312453-1312453|C/T|missense_variant	REV__SDCBP2|p.V206M|2|0.21|ENSG00000125775|chr20:1312453-1312453|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	362.2535705566406	3	362.253265	1083.73797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.568	1	52.381	51.881	52.881	-0.18725								0	0	0	0.97116	1	20196	20196		0	0	1		+		36828	11818	23596	23717	35438	35438					0.19944618230283595
VLSVIKGKKI	10	Unmodified	_VLSVIKGKKI_					0	0	0			REV__SDCBP2|p.V206M|2|0.21|ENSG00000125775|chr20:1312453-1312453|C/T|missense_variant	REV__SDCBP2|p.V206M|2|0.21|ENSG00000125775|chr20:1312453-1312453|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	362.2533874511719	3	362.253265	1083.73797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.811	1	52.505	52.005	53.005	-0.30639								0	0	0	0.97116	1	19973	19973		0	0	1		+		36829	11818	23596	23717	35439	35439					0.19944618230283595
VLSVIKGKKI	10	Unmodified	_VLSVIKGKKI_					0	0	0			REV__SDCBP2|p.V206M|2|0.21|ENSG00000125775|chr20:1312453-1312453|C/T|missense_variant	REV__SDCBP2|p.V206M|2|0.21|ENSG00000125775|chr20:1312453-1312453|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	362.25335693359375	3	362.253265	1083.73797	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.569	1	57.275	56.775	57.775	-0.29465								0	0	0	0.97116	1	21613	21613		0	0	1		+		36830	11818	23596	23717	35440	35440					0.19944618230283595
VLTDREKDFY	10	Unmodified	_VLTDREKDFY_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	MULTI-SECPEP	HCT116MG_D190212_S3	3	643.8268432617188	2	643.324785	1284.63502	0.60449	0.00038889	0.13645	8.7781E-05	0.74094	0.00047667	643.8262264607812	52.371	0.20903	52.064	51.934	52.143	-0.30639					7	3	3	0	0	0	0.30738	1	19826	19826		9.3831	0	1	3656800		+	36831	570	23597	23718	35441	35441					0.004084609809979156
VLTDTRGLY	9	Unmodified	_VLTDTRGLY_					0	0	0		nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2854614257812	2	519.284931	1036.55531	0.27363	0.00014209	0.39982	0.00020762	0.67345	0.00034971	519.2850369766713	36.948	0.30934	36.833	36.653	36.963	-0.11478					13	5	3	0	0	0	0.0201	1	13834	13834		96.367	46.812	1	113340000			36832	3131	23598	23719	35442	35442					0.03849439097666618
VLTDTRGLY	9	Unmodified	_VLTDTRGLY_					0	0	0		nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	MULTI-MATCH	HCT116MG_D190212_S3	3		2	519.284931	1036.55531	0.30837	0.00016013	0.25515	0.0001325	0.56352	0.00029263	519.2849193234546	37.2	0.31232	36.899	36.717	37.029	-0.30137	0.032872	-0.00010305	NaN	96.367	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9181000			36833	3131	23598	23719							0.03849439097666618
VLTGTSVL	8	Unmodified	_VLTGTSVL_					0	0	0			REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	395.2396240234375	2	395.239461	788.46437	0.13082	5.1707E-05	-0.11234	-4.4403E-05	0.018481	7.3045E-06	395.23931557137183	28.981	0.4179	28.981	28.798	29.216	0					10	7	2	0	0	0	0.40466	1	10579	10579		49.669	0	1	10839000	+		36834	13576	23599	23720	35443	35443					0.06167595120200531
VLTGTSVL	8	Unmodified	_VLTGTSVL_					0	0	0			REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	395.239461	788.46437	0.13082	5.1707E-05	-0.11234	-4.4403E-05	0.018481	7.3045E-06	395.23931557137183	28.981	0.4179	28.981	28.798	29.216	0	-0.16011	2.178E-05	NaN	49.669	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10839000	+		36835	13576	23599	23720							0.06167595120200531
VLTGTSVL	8	Unmodified	_VLTGTSVL_					0	0	0			REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	395.239461	788.46437	0.09602	3.7951E-05	-0.12075	-4.7724E-05	-0.024726	-9.7728E-06	395.2393743305233	29.45	0.36505	29.213	29.031	29.396	-0.23655	0.072046	1.5138E-05	NaN	49.669	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9089700	+		36836	13576	23599	23720							0.06167595120200531
VLTGTSVL	8	Unmodified	_VLTGTSVL_					0	0	0			REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	395.239461	788.46437	0.060119	2.3761E-05	-0.15583	-6.1589E-05	-0.095708	-3.7828E-05	395.2393141719633	29.579	0.46796	29.229	28.981	29.449	-0.34921	0.088067	-1.2593E-05	NaN	49.669	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8990600	+		36837	13576	23599	23720							0.06167595120200531
VLTKPVRPGP	10	Unmodified	_VLTKPVRPGP_					0	0	0			REV__ENST00000519028.1_1_8:22900630-22926407:-|nuORF	REV__ENST00000519028.1_1_8:22900630-22926407:-|nuORF	MSMS	HCT116MG_D190212_S3	3	532.76708984375	2	532.334759	1062.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.098	1	41.795	41.295	42.295	-0.30257								0	0	0	0.93854	1	15672	15672		7.2892	2.5332	1		+		36838	11702	23600	23721	35444	35444					0.12614301502276248
VLTSKLLKR	9	Unmodified	_VLTSKLLKR_					0	0	0			REV__ENSG00000160801|ENST00000449590|PTH1R	REV__ENSG00000160801|ENST00000449590|PTH1R	MSMS	HCT116MG_D190212_S1	1	529.3853149414062	2	529.358234	1056.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.696	1	58.696	58.196	59.196	0								0	0	0	0.76978	1	22618	22618		1.6526	0	1		+		36839	12844	23601	23722	35445	35445					0.1758316105342601
VLTVKKDI	8	Unmodified	_VLTVKKDI_					0	0	0			REV__LRRC43|p.I561Sfs*10|2|0.27|ENSG00000158113|chr12:122200799-122200799|C/-|frameshift_variant	REV__LRRC43|p.I561Sfs*10|2|0.27|ENSG00000158113|chr12:122200799-122200799|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	458.7405090332031	2	458.29731	914.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.437	1	38.056	37.556	38.556	-0.38163								0	0	0	0.8837	1	14087	14087		10.183	0	1		+		36840	12771	23602	23723	35446	35446					0.11936118971038923
VLTVLLQTVF	10	Unmodified	_VLTVLLQTVF_					0	0	0			REV__nc|ENSG00000029534|P16157-20|ANK1	REV__nc|ENSG00000029534|P16157-20|ANK1	MSMS	HCT116MG_D190212_S3	3	378.23858642578125	3	378.237392	1131.69035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.937	1	47.621	47.121	48.121	-0.31596								0	0	0	0.95241	1	18016	18016		4.1895	1.1172	1		+		36841	17069	23603	23724	35447	35447					0.1297691923941784
VLVAQVVA	8	Unmodified	_VLVAQVVA_					0	0	0		UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	UBR1|p.P1614Hfs*32|1|0.22|ENSG00000159459|chr15:42952443-42952443|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	399.7559814453125	2	399.757821	797.501089	-0.15368	-6.1436E-05	-2.7122	-0.0010842	-2.8659	-0.0011457	399.75655295173755	51.73	0.25769	51.73	51.549	51.807	0					6	4	2	0	0	0	0.86388	1	19790	19790		2.8892	0	1	11988000			36842	4415	23604	23725	35448	35448					0.09423891736753376
VLVASRTFA	9	Unmodified	_VLVASRTFA_					0	0	0		PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	482.2846374511719	2	482.284734	962.554916	-0.084519	-4.0762E-05	0.50774	0.00024488	0.42322	0.00020411	482.28482021207566	42.99	0.41117	42.92	42.844	43.255	-0.069984					11	7	2	0	0	0	0.1754	1	16319	16319		43.858	5.8843	1	36767000			36843	9738	23605	23726	35449	35449					0.07214064168454115
VLVASRTFA	9	Unmodified	_VLVASRTFA_					0	0	0		PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	482.28497314453125	2	482.284734	962.554916	0.2652	0.0001279	0.7656	0.00036924	1.0308	0.00049714	482.28504838383407	43.364	0.244	43.059	42.945	43.189	-0.30472					7	4	2	0	0	0	0.1754	1	16218	16218		43.858	5.8843	1	5506800			36844	9738	23605	23726	35450	35450					0.07214064168454115
VLVASRTFA	9	Unmodified	_VLVASRTFA_					0	0	0		PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	482.284734	962.554916	-0.084519	-4.0762E-05	0.50774	0.00024488	0.42322	0.00020411	482.28482021207566	42.99	0.41117	42.92	42.844	43.255	-0.069984	-0.11861	-0.00010594	NaN	43.858	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36767000			36845	9738	23605	23726							0.07214064168454115
VLVASRTFA	9	Unmodified	_VLVASRTFA_					0	0	0		PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	PDHA1|p.N29T|1|0.63|ENSG00000131828|chrX:19349340-19349340|A/C|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	482.284734	962.554916	0.2652	0.0001279	0.7656	0.00036924	1.0308	0.00049714	482.28504838383407	43.364	0.244	43.059	42.945	43.189	-0.30472	0.020042	0.00014278	NaN	43.858	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5506800			36846	9738	23605	23726							0.07214064168454115
VLVCLVLA	8	Unmodified	_VLVCLVLA_					0	0	0		ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3;ENST00000531925.5_1_19:1789538-1806275:-|nuORF;ENST00000533107.3_1_19:1799652-1806029:-|nuORF	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	415.2642822265625	2	415.264425	828.514297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.385	1	47.385	46.885	47.885	0								0	0	0	0.8837	1	18002	18002		0.79363	0	1				36847	230	23606	23727	35451	35451					0.09318006524472366
VLVDQTTGL	9	Unmodified	_VLVDQTTGL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	HCT116MG_D190212_S2	2	945.5243530273438	1	945.525138	944.517862	0.83971	0.00079397	-0.41273	-0.00039025	0.42698	0.00040372	945.5243794638131	41.642	0.30863	41.574	41.396	41.705	-0.068199					8	5	2	0	0	0	0.0096523	1	15746	15746		114.2	36.052	1	32614000			36848	1166	23607	23728	35452	35452					0.04338347832026557
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	713.4385375976562	2	713.438078	1424.8616	0.72181	0.00051497	0.0057544	4.1054E-06	0.72757	0.00051907	713.4380119057133	49.209	0.36208	49.209	49.027	49.389	0					23	6	5	0	0	0	0.70662	1	18735	18735		19.362	4.1135	1	290940000	+		36849	14970	23608	23729	35453	35453					0.1661666933057404
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	475.9612731933594	3	475.961144	1424.8616	0.14524	6.9128E-05	0.22334	0.0001063	0.36858	0.00017543	476.295591557584	49.209	0.36208	49.209	49.027	49.389	0					25	6	5	0	0	0	0.73844	1	18745	18745		3.8459	1.5932	1	335540000	+		36850	14970	23608	23729	35454	35454					0.1661666933057404
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	475.9610900878906	3	475.961144	1424.8616	0.11759	5.5968E-05	0.045393	2.1605E-05	0.16298	7.7573E-05	475.9610842764158	49.265	0.65913	49.111	48.884	49.543	-0.15405					41	12	5	0	0	0	0.73156	1	18830	18830		5.5233	1.4067	1	1458499999.9999998	+		36851	14970	23608	23729	35455	35455					0.1661666933057404
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	475.96142578125	3	475.961144	1424.8616	0.089913	4.2795E-05	0.14272	6.793E-05	0.23263	0.00011072	476.2956161509921	49.576	0.41808	49.261	49.027	49.445	-0.31596					22	7	4	0	0	0	0.73844	1	18653	18653		3.8459	0.25323	1	68088000	+		36852	14970	23608	23729	35456	35456					0.1661666933057404
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	713.4383544921875	2	713.438078	1424.8616	0.53186	0.00037945	0.021432	1.529E-05	0.55329	0.00039474	713.4379639609792	49.576	0.36591	49.26	49.027	49.393	-0.31596					19	6	4	0	0	0	0.70073	1	18658	18658		21.537	9.2963	1	49853000	+		36853	14970	23608	23729	35457	35457					0.1661666933057404
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	713.438078	1424.8616	0.72181	0.00051497	0.0057544	4.1054E-06	0.72757	0.00051907	713.4380119057133	49.209	0.36208	49.209	49.027	49.389	0	-0.025421	-1.01E-05	NaN	21.537	23	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290940000	+		36854	14970	23608	23729							0.1661666933057404
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	475.961144	1424.8616	0.14524	6.9128E-05	0.22334	0.0001063	0.36858	0.00017543	476.295591557584	49.209	0.36208	49.209	49.027	49.389	0	0.010547	0.00018785	NaN	5.5233	25	6	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335540000	+		36855	14970	23608	23729							0.1661666933057404
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	713.438078	1424.8616	0.53186	0.00037945	0.021432	1.529E-05	0.55329	0.00039474	713.4379639609792	49.576	0.36591	49.26	49.027	49.393	-0.31596	0.025421	1.227E-05	NaN	21.537	19	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49853000	+		36856	14970	23608	23729							0.1661666933057404
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		3	475.961144	1424.8616	0.089913	4.2795E-05	0.14272	6.793E-05	0.23263	0.00011072	476.2956161509921	49.576	0.41808	49.261	49.027	49.445	-0.31596	0.062197	7.2729E-05	NaN	5.5233	22	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68088000	+		36857	14970	23608	23729							0.1661666933057404
VLVDWLLKQRR	11	Unmodified	_VLVDWLLKQRR_					0	0	0			REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		3	475.961144	1424.8616	0.35191	0.0001675	-1.2287	-0.0005848	-0.87676	-0.0004173	476.2949233501952	49.575	0.20233	49.213	49.067	49.269	-0.36213	0.014186	-0.0018855	NaN	5.5233	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6128800	+		36858	14970	23608	23729							0.1661666933057404
VLVESEHQV	9	Unmodified	_VLVESEHQV_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	HCT116MG_D190212_S1	1	520.2747802734375	2	520.274564	1038.53457	0.40536	0.0002109	0.49977	0.00026002	0.90512	0.00047091	520.2747689358433	27.727	0.20788	27.727	27.592	27.8	0					7	3	3	0	0	0	0.069315	1	10088	10088		65.235	32.449	1	7234600			36859	4522	23609	23730	35458	35458					0.016848487179913718
VLVESEHQV	9	Unmodified	_VLVESEHQV_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	HCT116MG_D190212_S2	2	520.2756958007812	2	520.274564	1038.53457	0.33139	0.00017241	1.2408	0.00064557	1.5722	0.00081799	520.2753078432177	28.163	0.20716	27.833	27.719	27.926	-0.32987					5	3	2	0	0	0	0.061422	1	10273	10273		69.105	29.148	1	11496000			36860	4522	23609	23730	35459	35459					0.016848487179913718
VLVETLDP	8	Unmodified	_VLVETLDP_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MSMS	HCT116MG_D190212_S2	2	443.25048828125	2	443.250026	884.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.906	1	22.521	22.021	23.021	-0.3852								0	0	0	0.8837	1	8138	8138		10.183	0	1		+		36861	13036	23610	23731	35460	35460					0.03863560429056179
VLVGVLMH	8	Unmodified	_VLVGVLMH_					0	0	0			REV__LY6G5B|p.V3D|1|0.21|ENSG00000240053|chr6:31670958-31670958|T/A|missense_variant	REV__LY6G5B|p.V3D|1|0.21|ENSG00000240053|chr6:31670958-31670958|T/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	434.259033203125	2	434.259674	866.504795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.893	1	56.614	56.114	57.114	-0.27913								0	0	0	0.8837	1	21608	21608		0.79363	0	1		+		36862	14348	23611	23732	35461	35461					0.0662023823895197
VLVIGTAL	8	Unmodified	_VLVIGTAL_					0	0	0			REV__ENSG00000114650|ENST00000265565|SCAP	REV__ENSG00000114650|ENST00000265565|SCAP	MSMS	HCT116MG_D190212_S1	1	393.25933837890625	2	393.260197	784.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.53	1	29.53	29.03	30.03	0								0	0	0	0.8837	1	10796	10796		6.3541	0	1		+		36863	11513	23612	23733	35462	35462					0.1049677587949418
VLVITKVMY	9	Unmodified	_VLVITKVMY_					0	0	0			REV__SPAG5|p.P250Lfs*21|1|0.43|ENSG00000076382|chr17:28592495-28592495|G/-|frameshift_variant	REV__SPAG5|p.P250Lfs*21|1|0.43|ENSG00000076382|chr17:28592495-28592495|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	533.3229370117188	2	533.322471	1064.63039	0.18277	9.7478E-05	-0.13352	-7.1209E-05	0.049254	2.6269E-05	533.3223763322006	48.046	0.56406	48.046	47.742	48.306	0					17	10	2	0	0	0	0.7005	1	18338	18338		5.2307	0	1	7721100	+		36864	10819	23613	23734	35463	35463					0.10065905304531952
VLVKLVPLVPL	11	Unmodified	_VLVKLVPLVPL_					0	0	0		COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	COL1A1|p.G809Afs*299|2|0.43|ENSG00000108821|chr17:50190354-50190354|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	397.2795715332031	3	397.280932	1188.82097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.304	1	55.997	55.497	56.497	-0.30626								0	0	0	0.9619	1	21103	21103		0.094841	0	1				36865	514	23614	23735	35464	35464					0.23410934958246798
VLVLLKLKK	9	Unmodified	_VLVLLKLKK_					0	0	0			REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF	REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF	MSMS	HCT116MG_D190212_S1	1	527.3931884765625	2	527.391545	1052.76854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.407	1	30.407	29.907	30.907	0								0	0	0	0.76967	1	11151	11151		2.0598	0	1		+		36866	14548	23615	23736	35465	35465					0.24426396615308477
VLVLLPLPIV	10	Unmodified	_VLVLLPLPIV_					0	0	0		SLC13A1|p.N460Rfs*6|1|0.06|ENSG00000081800|chr7:123119214-123119215|-/CCCCTTTTTACTC|frameshift_variant;ENSG00000081800|ENST00000194130|SLC13A1	SLC13A1|p.N460Rfs*6|1|0.06|ENSG00000081800|chr7:123119214-123119215|-/CCCCTTTTTACTC|frameshift_variant	SLC13A1|p.N460Rfs*6|1|0.06|ENSG00000081800|chr7:123119214-123119215|-/CCCCTTTTTACTC|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	359.2537536621094	3	359.254494	1074.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.69	1	34.393	33.893	34.893	-0.29707								0	0	0	0.97045	1	12778	12778		0.15932	0	1				36867	1416	23616	23737	35466	35466					0.20727288004104594
VLVLLPLPIV	10	Unmodified	_VLVLLPLPIV_					0	0	0		SLC13A1|p.N460Rfs*6|1|0.06|ENSG00000081800|chr7:123119214-123119215|-/CCCCTTTTTACTC|frameshift_variant;ENSG00000081800|ENST00000194130|SLC13A1	SLC13A1|p.N460Rfs*6|1|0.06|ENSG00000081800|chr7:123119214-123119215|-/CCCCTTTTTACTC|frameshift_variant	SLC13A1|p.N460Rfs*6|1|0.06|ENSG00000081800|chr7:123119214-123119215|-/CCCCTTTTTACTC|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	359.2537841796875	3	359.254494	1074.74165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.723	1	34.337	33.837	34.837	-0.3858								0	0	0	0.97045	1	12690	12690		0.15932	0	1				36868	1416	23616	23737	35467	35467					0.20727288004104594
VLVLLRHLRL	10	Unmodified	_VLVLLRHLRL_					0	0	0		ENST00000311117.7_1_7:104702708-104703876:+|nuORF	ENST00000311117.7_1_7:104702708-104703876:+|nuORF	ENST00000311117.7_1_7:104702708-104703876:+|nuORF	MSMS	HCT116MG_D190212_S4	4	411.2854309082031	3	411.283559	1230.82885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.803	1	61.548	61.048	62.048	-0.25457								0	0	0	0.96911	1	23325	23325		0.15932	0	1				36869	7058	23617	23738	35468	35468					0.22266506998403202
VLVLSGLP	8	Unmodified	_VLVLSGLP_					0	0	0			REV__ZCWPW2|p.K303Sfs*25|1|0.18|ENSG00000206559|chr3:28521112-28521112|A/-|frameshift_variant	REV__ZCWPW2|p.K303Sfs*25|1|0.18|ENSG00000206559|chr3:28521112-28521112|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	399.25909423828125	2	399.260197	796.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.116	1	39.116	38.616	39.616	0								0	0	0	0.8837	1	14665	14665		6.3541	0	1		+		36870	14246	23618	23739	35469	35469					0.09944775879523604
VLVPAATA	8	Unmodified	_VLVPAATA_					0	0	0			REV__ENSG00000095713|ENST00000370597|CRTAC1	REV__ENSG00000095713|ENST00000370597|CRTAC1	MSMS	HCT116MG_D190212_S4	4	371.10107421875	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.5496	1	2.285	1.785	2.785	-0.26456								0	0	0	0.8837	1	774	774		0	0	1		+		36871	11030	23619	23740	35470	35470					0.06263629811303417
VLVQGRKV	8	Unmodified	_VLVQGRKV_					0	0	0		ENST00000483209.5_1_3:118930805-118931024:-|nuORF	ENST00000483209.5_1_3:118930805-118931024:-|nuORF	ENST00000483209.5_1_3:118930805-118931024:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	898.582275390625	1	898.583262	897.575986	1.0591	0.0009517	2.2141	0.0019896	3.2733	0.0029413	898.5807680490976	60.357	2.0609	60.202	59.291	61.352	-0.15441					123	40	4	0	0	0	0.87576	1	23320	23320		0.79363	0	1	18408000			36872	8270	23620	23741	35471	35471					0.12310074267998061
VLVQKVVT	8	Unmodified	_VLVQKVVT_					0	0	0		ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;RAD54L2|p.S1325Pfs*18|1|0.33|ENSG00000164080|chr3:51662984-51662984|C/-|frameshift_variant;ENSG00000164080|ENST00000684192|RAD54L2	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MSMS	HCT116MG_D190212_S1	1	443.2926940917969	2	443.292028	884.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.649	1	27.649	27.149	28.149	0								0	0	0	0.74658	1	10042	10042		26.884	1.4843	1				36873	4665	23621	23742	35472	35472					0.12260136316615444
VLWLFFVV	8	Unmodified	_VLWLFFVV_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MSMS	HCT116MG_D190212_S4	4	511.8063659667969	2	511.807314	1021.60008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.111	1	45.739	45.239	46.239	-0.37206								0	0	0	0.8837	1	17030	17030		11.114	0	1				36874	1240	23622	23743	35473	35473					0.09013914701665726
VLWSDSSITSV	11	Unmodified	_VLWSDSSITSV_					0	0	0		nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	nc|ENSG00000140948|Q8WYQ9|ZCCHC14	MULTI-SECPEP	HCT116MG_D190212_S2	2	597.8574829101562	2	597.306061	1192.59757	0.53088	0.0003171	0.12905	7.7081E-05	0.65993	0.00039418	597.3060869566568	53.553	0.20559	53.364	53.223	53.429	-0.1894					5	3	2	0	0	0	0.19204	1	20605	20605		66.457	28.281	1	10592000			36875	3693	23623	23744	35474	35474					0.008973697153578541
VLYKGNSTIV	10	Unmodified	_VLYKGNSTIV_					0	0	0			REV__tr|U7SSG1|U7SSG1_FUSNUStageIIsporulationproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01435PE=4SV=1	REV__tr|U7SSG1|U7SSG1_FUSNUStageIIsporulationproteinDOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01435PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	547.3172607421875	2	547.316232	1092.61791	0.36519	0.00019987	0.60817	0.00033286	0.97336	0.00053274	547.316797531285	38.32	0.62925	38.227	37.96	38.589	-0.093006					16	11	3	0	0	0	0.69419	1	14425	14425		29.841	1.3537	1	32030000	+		36876	17765	23624	23745	35475	35475					0.0753058516584133
VLYKNSIF	8	Unmodified	_VLYKNSIF_					0	0	0			REV__ENSG00000115446|ENST00000357765|UNC50	REV__ENSG00000115446|ENST00000357765|UNC50	MSMS	HCT116MG_D190212_S3	3	492.2802429199219	2	492.28166	982.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.476	1	57.202	56.702	57.702	-0.27434								0	0	0	0.8837	1	21843	21843		6.3541	0.59368	1		+		36877	11545	23625	23746	35476	35476					0.05679545936948216
VLYPYPPP	8	Unmodified	_VLYPYPPP_					0	0	0			REV__ENST00000474291.1_1_7:97911152-97911766:+|nuORF	REV__ENST00000474291.1_1_7:97911152-97911766:+|nuORF	MSMS	HCT116MG_D190212_S4	4	473.2595520019531	2	473.257654	944.500755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.206	1	27.875	27.375	28.375	-0.33138								0	0	0	0.86899	1	10133	10133		17.087	2.5049	1		+		36878	13020	23626	23747	35477	35477					0.026284720168973763
VLYPYPPP	8	Unmodified	_VLYPYPPP_					0	0	0			REV__ENST00000474291.1_1_7:97911152-97911766:+|nuORF	REV__ENST00000474291.1_1_7:97911152-97911766:+|nuORF	MSMS	HCT116MG_D190212_S4	4	473.25927734375	2	473.257654	944.500755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.476	1	34.09	33.59	34.59	-0.38558								0	0	0	0.8837	1	12590	12590		6.3541	0.59368	1		+		36879	13020	23626	23747	35478	35478					0.026284720168973763
VMAGGLFH	8	Unmodified	_VMAGGLFH_					0	0	0			REV__ENSG00000255713|ENST00000545221|OR4D2	REV__ENSG00000255713|ENST00000545221|OR4D2	MSMS	HCT116MG_D190212_S4	4	416.212890625	2	416.212724	830.410894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.55	1	28.218	27.718	28.718	-0.33138								0	0	0	0.8837	1	10271	10271		2.8892	0	1		+		36880	14397	23627	23748	35479	35479					-0.011094808633288267
VMAKLRSP	8	Unmodified	_VMAKLRSP_					0	0	0		ENST00000396684.2_1_12:7043414-7043640:+|nuORF	ENST00000396684.2_1_12:7043414-7043640:+|nuORF	ENST00000396684.2_1_12:7043414-7043640:+|nuORF	MSMS	HCT116MG_D190212_S3	3	451.26751708984375	2	451.26803	900.521507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.186	1	51.877	51.377	52.377	-0.30927								0	0	0	0.8837	1	19722	19722		6.3541	0	1				36881	7656	23628	23749	35480	35480					0.06726739124917458
VMAMASSISFP	11	Unmodified	_VMAMASSISFP_					0	0	0			REV__SERPINB1|p.K203Ifs*10|1|0.36|ENSG00000021355|chr6:2835982-2835983|TT/-|frameshift_variant	REV__SERPINB1|p.K203Ifs*10|1|0.36|ENSG00000021355|chr6:2835982-2835983|TT/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	380.8537292480469	3	380.852444	1139.5355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.681	1	10.407	9.9074	10.907	-0.27365								0	0	0	0.95925	1	3394	3394		0.50596	0	1		+		36882	10550	23629	23750	35481	35481					-0.02868396228950587
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S1	1	507.3124694824219	2	507.312438	1012.61032	0.33089	0.00016787	-0.16137	-8.1865E-05	0.16952	8.6002E-05	507.3123617825625	51.885	0.31709	51.885	51.704	52.021	0					16	5	4	0	0	0	0.026999	1	19820	19820		89.401	0	1	114280000			36883	6396	23630	23751	35482	35482					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S2	2	507.31268310546875	2	507.312438	1012.61032	0.47689	0.00024193	0.36272	0.00018401	0.83961	0.00042594	507.31253116017183	50.552	0.52343	50.38	50.138	50.662	-0.1719					25	9	4	0	0	0	0.040027	1	19358	19358		79.596	0	1	250580000			36884	6396	23630	23751	35483	35483					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S2	2	507.31268310546875	2	507.312438	1012.61032	0.58075	0.00029462	-0.23214	-0.00011777	0.34861	0.00017685	507.31223026068886	51.941	0.6184	51.758	51.475	52.094	-0.18369					28	11	4	0	0	0	0.026999	1	19942	19942		89.401	0	1	433870000			36885	6396	23630	23751	35484	35484					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S2	2	1013.6172485351562	1	1013.6176	1012.61032	0.86882	0.00088065	0.048524	4.9185E-05	0.91735	0.00092984	1013.6177448798667	51.941	0.25772	51.758	51.629	51.887	-0.18369					7	4	2	0	0	0	0.030723	1	19968	19968		85.642	0	1	22878000			36886	6396	23630	23751	35485	35485					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MSMS	HCT116MG_D190212_S3	3	507.62005615234375	2	507.312438	1012.61032	0.20858	0.00010582	0.73932	0.00037507	0.9479	0.00048088	507.31255311191336	50.769	0.26034	50.455	50.333	50.594	-0.31381					6	4	2	0	0	0	0.43843	1	19203	19203		20.415	0	1	3171300			36887	6396	23630	23751	35486	35486					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	MSMS	HCT116MG_D190212_S3	3	507.312744140625	2	507.312438	1012.61032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.3	1	51.991	51.491	52.491	-0.30927								0	0	0	0.10186	1	19768	19768		55.503	0	1				36888	6396	23630	23751	35487	35487					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		nc|ENSG00000206503|P04439-2|HLA-A;ENSG00000206503|ENST00000376809|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	nc|ENSG00000206503|P04439-2|HLA-A	nc|ENSG00000206503|P04439-2|HLA-A	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	507.312438	1012.61032	0.18083	9.1739E-05	0.52188	0.00026476	0.70272	0.0003565	507.31269245048867	50.446	0.30821	50.446	50.266	50.574	0	0.018714	0.0001368	NaN	79.596	15	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78391000			36889	6396	23630	23751							0.10452154364600119
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.R72Gfs*5|1|0.25|ENSG00000234745|chr6:31356818-31356818|C/-|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;HLA-B|p.P81Rfs*70|1|0.56|ENSG00000234745|chr6:31356791-31356791|C/-|frameshift_variant;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant	HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	500.304931640625	2	500.304613	998.594672	0.33976	0.00016998	-0.078341	-3.9194E-05	0.26142	0.00013079	500.30477643333705	47.458	0.38735	47.458	47.309	47.696	0					20	7	5	0	0	0	0.066823	1	18021	18021		66.457	16.524	1	91261000			36890	6522	23631	23752	35488	35488					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.R72Gfs*5|1|0.25|ENSG00000234745|chr6:31356818-31356818|C/-|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;HLA-B|p.P81Rfs*70|1|0.56|ENSG00000234745|chr6:31356791-31356791|C/-|frameshift_variant;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant	HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	500.3047790527344	2	500.304613	998.594672	0.67142	0.00033591	-0.84115	-0.00042083	-0.16973	-8.4916E-05	500.3044888697499	47.568	0.51649	47.439	47.175	47.691	-0.1288					33	9	6	0	0	0	0.047849	1	18116	18116		75.761	9.3041	1	215340000			36891	6522	23631	23752	35489	35489					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.R72Gfs*5|1|0.25|ENSG00000234745|chr6:31356818-31356818|C/-|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;HLA-B|p.P81Rfs*70|1|0.56|ENSG00000234745|chr6:31356791-31356791|C/-|frameshift_variant;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant	HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	999.6019287109375	1	999.601949	998.594672	0.75822	0.00075792	-0.52733	-0.00052712	0.2309	0.0002308	999.6010919348522	47.587	0.25846	47.454	47.273	47.532	-0.13281					7	4	2	0	0	0	0.22946	1	18173	18173		38.176	11.907	1	11015000			36892	6522	23631	23752	35490	35490					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant;HLA-B|p.H215Tfs*11|1|0.35|ENSG00000234745|chr6:31355569-31355569|G/-|frameshift_variant;HLA-B|p.V306Afs*13|1|0.49|ENSG00000234745|chr6:31355202-31355202|A/-|frameshift_variant;HLA-B|p.V312Cfs*22|1|0.28|ENSG00000234745|chr6:31355185-31355186|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.R72Gfs*5|1|0.25|ENSG00000234745|chr6:31356818-31356818|C/-|frameshift_variant;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;HLA-B|p.G124Wfs*15|1|0.18|ENSG00000234745|chr6:31356416-31356417|-/A|frameshift_variant;HLA-B|p.P81Rfs*70|1|0.56|ENSG00000234745|chr6:31356791-31356791|C/-|frameshift_variant;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant	HLA-B|p.P209Qfs*5|6|0.16|ENSG00000234745|chr6:31355586-31355586|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	500.30474853515625	2	500.304613	998.594672	0.22786	0.000114	0.16431	8.2204E-05	0.39217	0.0001962	500.30477568514357	47.875	0.31235	47.559	47.411	47.723	-0.3155					9	5	2	0	0	0	0.24534	1	18012	18012		36.506	11.107	1	4565000			36893	6522	23631	23752	35491	35491					0.09531867847545072
VMDDGTNEY	9	Unmodified	_VMDDGTNEY_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	HCT116MG_D190212_S2	2	1043.4000244140625	1	1043.39862	1042.39134	0.76966	0.00080306	-0.076408	-7.9724E-05	0.69325	0.00072334	1043.3986171463184	28.126	0.20719	27.796	27.667	27.874	-0.32987					6	3	2	0	0	0	0.14972	1	10275	10275		48.346	0	1	12678000			36894	1728	23632	23753	35492	35492					-0.1281594645538462
VMDDGTNEY	9	Unmodified	_VMDDGTNEY_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	HCT116MG_D190212_S3	3	1043.3985595703125	1	1043.39862	1042.39134	0.43707	0.00045604	-0.33442	-0.00034893	0.10265	0.00010711	1043.3984242156957	28.103	0.31307	27.912	27.774	28.087	-0.19114					13	5	3	0	0	0	0.049545	1	10176	10176		74.929	17.458	1	8730700			36895	1728	23632	23753	35493	35493					-0.1281594645538462
VMDKMQLTY	9	Unmodified	_VMDKMQLTY_					0	0	0		nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	MULTI-MSMS	HCT116MG_D190212_S2	2	564.8173828125	2	564.775028	1127.5355	0.58663	0.00033131	-1.1848	-0.00066913	-0.59814	-0.00033782	564.7745632160497	40.872	0.20756	40.803	40.673	40.881	-0.069626					5	3	2	0	0	0	0.17423	1	15425	15425		43.982	9.8794	1	8233500			36896	1927	23633	23754	35494	35494					-0.023163962289572737
VMDPGVRRRKV	11	Unmodified	_VMDPGVRRRKV_					0	0	0			REV__ENST00000311841.7_2_1:54662114-54665667:-|nuORF	REV__ENST00000311841.7_2_1:54662114-54665667:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	656.8764038085938	2	656.885155	1311.75576	0.73344	0.00048179	-0.3082	-0.00020245	0.42524	0.00027933	657.38549434297	52.36	1.9583	52.36	51.4	53.359	0					102	37	5	0	0	0	0.74191	1	19663	19663		5.7319	0.83484	1	109310000	+		36897	14837	23634	23755	35495	35495					0.11235010213476926
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(97)DSKIVQV	0	0	1		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	HCT116MG_D190212_S1	1	517.7818603515625	2	517.781167	1033.54778	0.33589	0.00017392	-0.29059	-0.00015046	0.045301	2.3456E-05	517.7811665744418	31.879	0.52153	31.879	31.648	32.17	0					22	9	4	0	0	0	0.019537	1	11737	11737		96.936	34.363	1	17909000			36898	2409	23635	23756	35496	35496		46			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(78)DSKIVQV	0	0	1		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7813720703125	2	517.781167	1033.54778	0.31543	0.00016332	-0.24429	-0.00012649	0.071139	3.6834E-05	517.7814199082843	32.146	0.7785	31.916	31.58	32.359	-0.23009					21	14	2	0	0	0	0.043159	1	11856	11856		78.06	34.288	1	19185000			36899	2409	23635	23756	35497	35497		46			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(63)DSKIVQV	0	0	1		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MSMS	HCT116MG_D190212_S3	3	517.7815551757812	2	517.781167	1033.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.121	1	31.843	31.343	32.343	-0.27841								0	0	0	0.074874	1	11761	11761		63.227	28.826	1				36900	2409	23635	23756	35498	35498		46			0.03234963505747146
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	HCT116MG_D190212_S1	1	509.7839050292969	2	509.78371	1017.55287	0.37039	0.00018882	0.30988	0.00015797	0.68027	0.00034679	509.78369451698546	37.016	0.36283	37.016	36.835	37.197	0					14	6	3	0	0	0	0.0035631	1	13819	13819		173.69	84.732	1	123660000			36901	2409	23635	23757	35499	35499					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	HCT116MG_D190212_S1	1	1018.560302734375	1	1018.56014	1017.55287	0.85368	0.00086953	-0.17548	-0.00017874	0.6782	0.00069079	1018.5597156902431	37.016	0.20771	37.016	36.886	37.094	0					5	3	2	0	0	0	0.0096523	1	13843	13843		114.2	51.629	1	10778000			36902	2409	23635	23757	35500	35500					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	509.78375244140625	2	509.78371	1017.55287	0.27451	0.00013994	-0.176	-8.972E-05	0.098517	5.0222E-05	509.7835447553076	37.052	0.41167	36.937	36.705	37.117	-0.11478					12	7	2	0	0	0	0.0035631	1	13856	13856		173.69	84.732	1	316930000			36903	2409	23635	23757	35501	35501					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	HCT116MG_D190212_S2	2	1018.5598754882812	1	1018.56014	1017.55287	0.70589	0.00071899	-1.8716	-0.0019064	-1.1657	-0.0011874	1018.5580193159714	37.052	0.25764	36.937	36.757	37.014	-0.11478					9	4	3	0	0	0	0.0082095	1	13888	13888		117.76	55.188	1	41582000			36904	2409	23635	23757	35502	35502					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	HCT116MG_D190212_S3	3	509.78369140625	2	509.78371	1017.55287	0.23542	0.00012001	0.036225	1.8467E-05	0.27164	0.00013848	509.78369280195466	37.252	0.31208	36.951	36.821	37.133	-0.30137					8	5	2	0	0	0	0.0034381	1	13795	13795		160.69	71.736	1	52068000			36905	2409	23635	23757	35503	35503					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	HCT116MG_D190212_S4	4	509.7837219238281	2	509.78371	1017.55287	0.089475	4.5613E-05	-0.22117	-0.00011275	-0.13169	-6.7134E-05	509.7836620758611	37.385	0.25688	37.002	36.823	37.079	-0.3839					6	4	2	0	0	0	0.0068427	1	13723	13723		121.53	42.806	1	6877800			36906	2409	23635	23757	35504	35504					0.044792673683673456
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	573.2813110351562	2	573.281	1144.54745	0.48384	0.00027738	-0.25376	-0.00014548	0.23008	0.0001319	573.2809688491986	46.311	0.25821	46.311	46.182	46.44	0					11	4	3	0	0	0	0.011132	1	17591	17591		110.55	70.595	1	45705000			36907	4403	23636	23758	35505	35505					-0.01904456214106176
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	573.2805786132812	2	573.281	1144.54745	0.33759	0.00019354	-0.48578	-0.00027849	-0.14819	-8.4952E-05	573.2807141195784	46.325	0.41214	46.214	46.008	46.42	-0.11121					20	7	4	0	0	0	0.016412	1	17653	17653		100.09	60.133	1	184620000			36908	4403	23636	23758	35506	35506					-0.01904456214106176
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1145.5543212890625	1	1145.55472	1144.54745	0.50482	0.0005783	-0.24234	-0.00027762	0.26248	0.00030068	1145.5544174632134	46.35	0.25862	46.239	46.059	46.317	-0.11121					7	4	2	0	0	0	0.032914	1	17662	17662		83.429	39.57	1	20019000			36909	4403	23636	23758	35507	35507					-0.01904456214106176
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MSMS	HCT116MG_D190212_S2	2	573.0238037109375	2	573.281	1144.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.645	1	46.534	46.034	47.034	-0.11121								0	0	0	0.47756	1	17773	17773		29.841	3.5724	1				36910	4403	23636	23758	35508	35508					-0.01904456214106176
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	573.7826538085938	2	573.281	1144.54745	0.6517	0.00037361	-0.67184	-0.00038515	-0.020143	-1.1548E-05	573.2803918295814	46.596	0.31262	46.283	46.126	46.438	-0.31325					10	5	3	0	0	0	0.026272	1	17498	17498		90.135	56.033	1	5683200			36911	4403	23636	23758	35509	35509					-0.01904456214106176
VMEKSFLEY	9	Oxidation (M)	_VM(Oxidation (M))EKSFLEY_		VM(1)EKSFLEY		VM(68)EKSFLEY	0	0	1		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MSMS	HCT116MG_D190212_S1	1	581.2783203125	2	581.278457	1160.54236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.894	1	43.894	43.394	44.394	0								0	0	0	0.058768	1	16596	16596		67.838	17.905	1				36912	4403	23636	23759	35510	35510		97			-0.031487600767377444
VMEKSFLEY	9	Oxidation (M)	_VM(Oxidation (M))EKSFLEY_		VM(1)EKSFLEY		VM(63)EKSFLEY	0	0	1		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	581.2789306640625	2	581.278457	1160.54236	0.72617	0.00042211	-0.14947	-8.6882E-05	0.5767	0.00033522	581.2782739326796	43.783	0.30861	43.704	43.505	43.813	-0.078373					10	5	3	0	0	0	0.07468	1	16630	16630		63.227	13.294	1	20921000			36913	4403	23636	23759	35511	35511		97			-0.031487600767377444
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.8882141113281	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.8979	1	3.8979	3.3979	4.3979	0								0	0	0	0.96208	1	1171	1171		0	0	1		+		36914	10370	23637	23760	35512	35512					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.8990783691406	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4803	1	5.4803	4.9803	5.9803	0								0	0	0	0.96208	1	1651	1651		0	0	1		+		36915	10370	23637	23760	35513	35513					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.887939453125	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9714	1	5.9714	5.4714	6.4714	0								0	0	0	0.96208	1	1800	1800		0	0	1		+		36916	10370	23637	23760	35514	35514					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.8880920410156	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4822	1	6.4822	5.9822	6.9822	0								0	0	0	0.96208	1	1953	1953		0	0	1		+		36917	10370	23637	23760	35515	35515					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.8881530761719	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.5923	1	6.5923	6.0923	7.0923	0								0	0	0	0.96208	1	1984	1984		0	0	1		+		36918	10370	23637	23760	35516	35516					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.8982849121094	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8381	1	6.8381	6.3381	7.3381	0								0	0	0	0.96208	1	2065	2065		0	0	1		+		36919	10370	23637	23760	35517	35517					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.8882751464844	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9915	1	6.9915	6.4915	7.4915	0								0	0	0	0.96208	1	2113	2113		0	0	1		+		36920	10370	23637	23760	35518	35518					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.8882141113281	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3459	1	7.3459	6.8459	7.8459	0								0	0	0	0.96208	1	2219	2219		0	0	1		+		36921	10370	23637	23760	35519	35519					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	430.88818359375	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.048	1	8.048	7.548	8.548	0								0	0	0	0.96208	1	2427	2427		0	0	1		+		36922	10370	23637	23760	35520	35520					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	430.8884582519531	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.186	1	64.07	63.57	64.57	-0.11585								0	0	0	0.96208	1	24853	24853		0	0	1		+		36923	10370	23637	23760	35521	35521					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.8883361816406	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.4609	1	2.5162	2.0162	3.0162	0.055284								0	0	0	0.96208	1	748	748		0	0	1		+		36924	10370	23637	23760	35522	35522					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.8883972167969	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.9084	1	3.9448	3.4448	4.4448	0.036387								0	0	0	0.96208	1	1183	1183		0	0	1		+		36925	10370	23637	23760	35523	35523					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.8880615234375	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0837	1	4.1124	3.6124	4.6124	0.028732								0	0	0	0.96208	1	1226	1226		0	0	1		+		36926	10370	23637	23760	35524	35524					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.8883056640625	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.7088	1	5.7263	5.2263	6.2263	0.017489								0	0	0	0.96208	1	1725	1725		0	0	1		+		36927	10370	23637	23760	35525	35525					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.88818359375	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.5123	1	6.5262	6.0262	7.0262	0.013901								0	0	0	0.96208	1	1967	1967		0	0	1		+		36928	10370	23637	23760	35526	35526					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.8879699707031	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1735	1	8.19	7.69	8.69	0.016533								0	0	0	0.96208	1	2465	2465		0	0	1		+		36929	10370	23637	23760	35527	35527					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.888427734375	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.2538	1	9.2799	8.7799	9.7799	0.026101								0	0	0	0.96208	1	2793	2793		0	0	1		+		36930	10370	23637	23760	35528	35528					0.009234324663793814
VMEVELELVTE	11	Unmodified	_VMEVELELVTE_					0	0	0			REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	REV__DLEC1|p.N951Mfs*67|1|0.31|ENSG00000008226|chr3:38100410-38100410|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	430.88800048828125	3	430.8881	1289.64247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8468	1	9.8794	9.3794	10.379	0.032559								0	0	0	0.96208	1	2977	2977		0	0	1		+		36931	10370	23637	23760	35529	35529					0.009234324663793814
VMFGGKQVVV	10	Unmodified	_VMFGGKQVVV_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MSMS	HCT116MG_D190212_S2	2	532.3021240234375	2	532.30207	1062.58959	0.68318	0.00036366	3.9244	0.002089	4.6076	0.0024526	532.304025858521	44.699	0.57522	44.614	44.428	45.004	-0.084797					23	10	3	0	0	0	0.033024	1	17068	17068		99.799	52.05	1	50255000			36932	5025	23638	23761	35530	35530					0.06079563984917513
VMFGGKQVVV	10	Unmodified	_VMFGGKQVVV_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	532.30207	1062.58959	0.23969	0.00012759	6.2674	0.0033362	6.5071	0.0034637	532.3054280567686	44.647	0.209	44.647	44.464	44.673	0	0.016566	0.00045392	NaN	99.799	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13333000			36933	5025	23638	23761							0.06079563984917513
VMGAVFSG	8	Unmodified	_VMGAVFSG_					0	0	0		SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant;SEMA6A|p.R918Efs*23|1|0.25|ENSG00000092421|chr5:116446955-116446956|-/T|frameshift_variant;SEMA6A|p.N990Mfs*8|1|0.1|ENSG00000092421|chr5:116446737-116446738|-/GTACA|frameshift_variant;SEMA6A|p.K1013Nfs*11|1|0.19|ENSG00000092421|chr5:116446670-116446670|G/-|frameshift_variant;SEMA6A|p.K1013Qfs*15|1|0.45|ENSG00000092421|chr5:116446669-116446670|-/G|frameshift_variant;ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	767.3782958984375	1	767.375637	766.368361	1.1492	0.00088187	-0.16666	-0.00012789	0.98255	0.00075398	767.3754110136705	41.592	0.30863	41.523	41.396	41.705	-0.068199					9	5	2	0	0	0	0.64761	1	15732	15732		28.173	3.9633	1	31806000			36934	1582	23639	23762	35531	35531					-0.024168759915369264
VMGAVFSG	8	Unmodified	_VMGAVFSG_					0	0	0		SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant;SEMA6A|p.R918Efs*23|1|0.25|ENSG00000092421|chr5:116446955-116446956|-/T|frameshift_variant;SEMA6A|p.N990Mfs*8|1|0.1|ENSG00000092421|chr5:116446737-116446738|-/GTACA|frameshift_variant;SEMA6A|p.K1013Nfs*11|1|0.19|ENSG00000092421|chr5:116446670-116446670|G/-|frameshift_variant;SEMA6A|p.K1013Qfs*15|1|0.45|ENSG00000092421|chr5:116446669-116446670|-/G|frameshift_variant;ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	SEMA6A|p.V881Ffs*20|2|0.21|ENSG00000092421|chr5:116447069-116447069|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	767.37646484375	1	767.375637	766.368361	0.46778	0.00035896	0.45412	0.00034848	0.9219	0.00070744	767.3758633276008	41.797	0.26212	41.494	41.415	41.677	-0.30257					8	5	2	0	0	0	0.64761	1	15555	15555		28.173	3.9633	1	8895100			36935	1582	23639	23762	35532	35532					-0.024168759915369264
VMGSVSSL	8	Unmodified	_VMGSVSSL_					0	0	0		LZTS2|p.A23D|1|0.35|ENSG00000107816|chr10:101002606-101002606|C/A|missense_variant;LZTS2|p.S102Afs*41|4|0.28|ENSG00000107816|chr10:101002836-101002836|C/-|frameshift_variant;LZTS2|p.P79Lfs*64|1|0.41|ENSG00000107816|chr10:101002770-101002770|C/-|frameshift_variant;ENST00000489526.1_1_10:102762295-102762823:+|nuORF;ENSG00000107816|ENST00000454422|LZTS2	LZTS2|p.A23D|1|0.35|ENSG00000107816|chr10:101002606-101002606|C/A|missense_variant	LZTS2|p.A23D|1|0.35|ENSG00000107816|chr10:101002606-101002606|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	390.2020263671875	2	390.202021	778.38949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.712	1	56.429	55.929	56.929	-0.28367								0	0	0	0.8837	1	21536	21536		2.8892	0	1				36936	2130	23640	23763	35533	35533					-0.0085691068268261
VMGSVSSL	8	Unmodified	_VMGSVSSL_					0	0	0		LZTS2|p.A23D|1|0.35|ENSG00000107816|chr10:101002606-101002606|C/A|missense_variant;LZTS2|p.S102Afs*41|4|0.28|ENSG00000107816|chr10:101002836-101002836|C/-|frameshift_variant;LZTS2|p.P79Lfs*64|1|0.41|ENSG00000107816|chr10:101002770-101002770|C/-|frameshift_variant;ENST00000489526.1_1_10:102762295-102762823:+|nuORF;ENSG00000107816|ENST00000454422|LZTS2	LZTS2|p.A23D|1|0.35|ENSG00000107816|chr10:101002606-101002606|C/A|missense_variant	LZTS2|p.A23D|1|0.35|ENSG00000107816|chr10:101002606-101002606|C/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	390.20208740234375	2	390.202021	778.38949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.715	1	56.415	55.915	56.915	-0.3004								0	0	0	0.8837	1	21268	21268		2.8892	0	1				36937	2130	23640	23763	35534	35534					-0.0085691068268261
VMHDSSFSV	9	Unmodified	_VMHDSSFSV_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	504.7266540527344	2	504.726392	1007.43823	0.3345	0.00016883	0.084868	4.2835E-05	0.41937	0.00021167	504.72656562742736	36.358	0.26792	36.358	36.202	36.47	0					7	4	2	0	0	0	0.065014	1	13567	13567		67.344	18.998	1	12714000			36938	65	23641	23764	35535	35535					-0.06519042113586693
VMHDSSFSV	9	Unmodified	_VMHDSSFSV_					0	0	0		ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	ADNP2|p.K1045Nfs*29|1|0.42|ENSG00000101544|chr18:80138543-80138543|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	504.7264709472656	2	504.726392	1007.43823	0.61874	0.0003123	-0.38609	-0.00019487	0.23265	0.00011743	504.7261842457062	36.433	0.25914	36.305	36.122	36.382	-0.12799					8	4	2	0	0	0	0.031005	1	13631	13631		85.357	47.206	1	43828000			36939	65	23641	23764	35536	35536					-0.06519042113586693
VMHHPLLY	8	Unmodified	_VMHHPLLY_					0	0	0			REV__ZNF805|p.Q248P|1|0.34|ENSG00000204524|chr19:57253562-57253562|A/C|missense_variant	REV__ZNF805|p.Q248P|1|0.34|ENSG00000204524|chr19:57253562-57253562|A/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	505.66314697265625	2	505.26803	1008.52151	0.43793	0.00022127	2.304	0.0011641	2.7419	0.0013854	505.26903092737865	31.684	0.20851	31.684	31.544	31.753	0					5	3	2	0	0	0	0.30658	1	11645	11645		17.087	9.7973	1	2250800	+		36940	18089	23642	23765	35537	35537					0.017587391249094253
VMIGGKAA	8	Unmodified	_VMIGGKAA_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENST00000462303.1_1_11:64518773-64519462:-|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MSMS	HCT116MG_D190212_S4	4	374.201416015625	2	373.715099	745.415645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.113	1	45.741	45.241	46.241	-0.37206								0	0	0	0.8837	1	17031	17031		0.79363	0	1				36941	1748	23643	23766	35538	35538					0.032754032794287014
VMIGGKAA	8	Unmodified	_VMIGGKAA_					0	0	0		ENSG00000100994|ENST00000216962|PYGB;PYGB|p.T677Kfs*4|1|0.44|ENSG00000100994|chr20:25292466-25292466|C/-|frameshift_variant;PYGB-C20orf152|2|fusion;PYGB-C20orf152|1|fusion;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENST00000462303.1_1_11:64518773-64519462:-|nuORF	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MSMS	HCT116MG_D190212_S4	4	373.7144775390625	2	373.715099	745.415645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.184	1	45.812	45.312	46.312	-0.37206								0	0	0	0.8837	1	17053	17053		2.5775	0	1				36942	1748	23643	23766	35539	35539					0.032754032794287014
VMILKLPF	8	Unmodified	_VMILKLPF_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.H864Sfs*18|1|0.34|ENSG00000082516|chr5:154904549-154904550|-/A|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	HCT116MG_D190212_S4	4	480.8011474609375	2	480.801174	959.587796	0.26158	0.00012577	-0.02782	-1.3376E-05	0.23376	0.00011239	480.80104933815164	51.838	1.9737	51.493	50.947	52.92	-0.34541					117	37	5	0	0	0	0.87576	1	19625	19625		0.79363	0	1	368980000			36943	1423	23644	23767	35540	35540					0.1063855496696533
VMKKKKLV	8	Unmodified	_VMKKKKLV_					0	0	0			REV__nc|ENSG00000157212|Q6ZW49-2|PAXIP1	REV__nc|ENSG00000157212|Q6ZW49-2|PAXIP1	MSMS	HCT116MG_D190212_S2	2	487.3353271484375	2	487.333173	972.651793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.539	1	58.369	57.869	58.869	-0.1703								0	0	0	0.8837	1	22627	22627		2.3027	0	1		+		36944	12747	23645	23768	35541	35541					0.16437335123907815
VMLALPSV	8	Unmodified	_VMLALPSV_					0	0	0		nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	MSMS	HCT116MG_D190212_S3	3	415.2452697753906	2	415.246232	828.477911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.392	1	62.161	61.661	62.661	-0.23129								0	0	0	0.8837	1	23833	23833		0.79363	0	1				36945	2481	23646	23769	35542	35542					0.05681129627771497
VMLGGRNIKV	10	Unmodified	_VMLGGRNIKV_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	HCT116MG_D190212_S1	1	543.826416015625	2	543.826243	1085.63793	0.69606	0.00037853	-0.49167	-0.00026738	0.20438	0.00011115	543.8260101947247	37.223	0.20679	37.223	37.094	37.301	0					5	3	2	0	0	0	0.45751	1	13925	13925		38.176	17.722	1	17855000			36946	5576	23647	23770	35543	35543					0.09854057624806956
VMLGGRNIKV	10	Unmodified	_VMLGGRNIKV_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	HCT116MG_D190212_S2	2	543.8265991210938	2	543.826243	1085.63793	0.36132	0.0001965	-0.13089	-7.1182E-05	0.23043	0.00012531	543.8262445446039	37.257	0.25797	37.154	37.026	37.284	-0.10318					11	4	4	0	0	0	0.12519	1	13961	13961		69.105	38.468	1	65825000			36947	5576	23647	23770	35544	35544					0.09854057624806956
VMLGGRNIKV	10	Unmodified	_VMLGGRNIKV_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MSMS	HCT116MG_D190212_S2	2	362.8865051269531	3	362.886588	1085.63793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.336	1	37.233	36.733	37.733	-0.10318								0	0	0	0.78574	1	13991	13991		20.581	4.4318	1				36948	5576	23647	23770	35545	35545					0.09854057624806956
VMLPKIFI	8	Unmodified	_VMLPKIFI_					0	0	0			REV__ENST00000588022.1_1_17:33786947-33787550:-|nuORF	REV__ENST00000588022.1_1_17:33786947-33787550:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	960.5953979492188	1	960.595072	959.587796	0.54081	0.0005195	-0.42727	-0.00041044	0.11354	0.00010906	960.5944244746288	50.755	0.36162	50.755	50.574	50.936	0					18	6	4	0	0	0	0.8029	1	19377	19377		11.114	11.114	1	310130000	+		36949	16667	23648	23771	35546	35546					0.10638554966953961
VMMEPLFDL	9	Unmodified	_VMMEPLFDL_					0	0	0			REV__ENST00000528538.5_3_11:47515973-47521102:-|nuORF	REV__ENST00000528538.5_3_11:47515973-47521102:-|nuORF	MSMS	HCT116MG_D190212_S4	4	547.7667236328125	2	547.766671	1093.51879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.342	1	50.992	50.492	51.492	-0.35028								0	0	0	0.76718	1	19105	19105		10.824	0.75	1		+		36950	12559	23649	23772	35547	35547					-0.02422897114911393
VMMEPLFDL	9	Unmodified	_VMMEPLFDL_					0	0	0			REV__ENST00000528538.5_3_11:47515973-47521102:-|nuORF	REV__ENST00000528538.5_3_11:47515973-47521102:-|nuORF	MSMS	HCT116MG_D190212_S4	4	547.7675170898438	2	547.766671	1093.51879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.297	1	52.962	52.462	53.462	-0.33473								0	0	0	0.76575	1	19894	19894		15.847	1.0089	1		+		36951	12559	23649	23772	35548	35548					-0.02422897114911393
VMMIGKMSTP	10	Unmodified	_VMMIGKMSTP_					0	0	0		ENST00000560801.5_2_15:31320559-31354823:-|nuORF	ENST00000560801.5_2_15:31320559-31354823:-|nuORF	ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	365.51806640625	3	365.518408	1093.53339	0.024609	8.9949E-06	0.13325	4.8706E-05	0.15786	5.7701E-05	365.8528850027576	25.604	0.78089	25.477	25.078	25.859	-0.12795					23	14	2	0	0	0	0.77749	1	9246	9246		8.4443	0	1	3614500			36952	8811	23650	23773	35549	35549					-0.009631482384065748
VMPFRPHHH	9	Unmodified	_VMPFRPHHH_					0	0	0			REV__ENST00000448497.1_1_3:186522520-186522649:-|nuORF	REV__ENST00000448497.1_1_3:186522520-186522649:-|nuORF	MSMS	HCT116MG_D190212_S2	2	579.29345703125	2	579.292902	1156.57125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.511	1	12.214	11.714	12.714	-0.29721								0	0	0	0.77025	1	4092	4092		0	0	1		+		36953	15695	23651	23774	35550	35550					-0.0007713314639659075
VMPFRPHHH	9	Unmodified	_VMPFRPHHH_					0	0	0			REV__ENST00000448497.1_1_3:186522520-186522649:-|nuORF	REV__ENST00000448497.1_1_3:186522520-186522649:-|nuORF	MSMS	HCT116MG_D190212_S2	2	579.2930908203125	2	579.292902	1156.57125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.585	1	13.28	12.78	13.78	-0.30453								0	0	0	0.77025	1	4443	4443		0	0	1		+		36954	15695	23651	23774	35551	35551					-0.0007713314639659075
VMQDPEFLQSV	11	Unmodified	_VMQDPEFLQSV_					0	0	0		ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENSG00000159352|ENST00000368884|PSMD4;ENST00000433951.1_1_21:37858358-37858475:-|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENST00000427779.5_2_1:151238655-151239816:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	646.81396484375	2	646.813196	1291.61184	0.71479	0.00046233	-0.16659	-0.00010775	0.5482	0.00035458	646.8133620914939	52.716	0.25805	52.529	52.399	52.657	-0.18725					6	4	2	0	0	0	0.28368	1	20289	20289		32.898	15.785	1	10545000			36955	4410	23652	23775	35552	35552					-0.02230301127997336
VMRLLSKHRAF	11	Unmodified	_VMRLLSKHRAF_					0	0	0		nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000115306|ENST00000356805|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-SECPEP	HCT116MG_D190212_S4	4	679.0640869140625	2	679.397899	1356.78124	0.76036	0.00051659	0.50448	0.00034274	1.2648	0.00085933	679.3979355341017	54.3	1.198	53.976	53.046	54.244	-0.32349					27	22	2	0	0	0	0.36614	1	20120	20120		0.26902	0	1	2820500			36956	2459	23653	23776	35553	35553					0.11712484735903672
VMSLIARFWD	10	Unmodified	_VMSLIARFWD_					0	0	0		tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	tr|U7SUC6|U7SUC6_FUSNUABCtransporterATP-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01185PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	619.348388671875	2	619.323534	1236.63251	0.66109	0.00040943	1.9608	0.0012143	2.6219	0.0016238	619.3246883344375	47.506	0.25795	47.384	47.233	47.491	-0.12175					6	4	2	0	0	0	0.29442	1	18162	18162		14.838	4.0143	1	7651200			36957	18473	23654	23777	35554	35554					0.023663340423354384
VMTIYLILP	9	Unmodified	_VMTIYLILP_					0	0	0		APIP|p.T203Hfs*22|1|0.4|ENSG00000149089|chr11:34883359-34883359|T/-|frameshift_variant	APIP|p.T203Hfs*22|1|0.4|ENSG00000149089|chr11:34883359-34883359|T/-|frameshift_variant	APIP|p.T203Hfs*22|1|0.4|ENSG00000149089|chr11:34883359-34883359|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	532.369140625	2	531.817021	1061.61949	0.53935	0.00028684	0.18935	0.0001007	0.72871	0.00038754	531.8167891025302	54.698	0.36456	54.374	54.192	54.557	-0.32349					9	6	2	0	0	0	0.26608	1	20484	20484		0	0	1	2278600			36958	158	23655	23778	35555	35555					0.09114502930265189
VMTLKRVIQK	10	Unmodified	_VMTLKRVIQK_					0	0	0			REV__THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant	REV__THOC2|p.L784Ffs*4|1|0.3|ENSG00000125676|chrX:123631817-123631818|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	608.3860473632812	2	608.383926	1214.7533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.066	1	51.883	51.383	52.383	-0.18369								0	0	0	0.94107	1	19992	19992		6.7232	2.7788	1		+		36959	11813	23656	23779	35556	35556					0.15451161755800058
VMVDGKPVNL	10	Unmodified	_VMVDGKPVNL_					0	0	0		RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant;ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant	RAC1|p.S83Pfs*3|1|0.19|ENSG00000136238|chr7:6400144-6400144|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	536.2974243164062	2	536.296985	1070.57942	0.59541	0.00031932	0.1082	5.8025E-05	0.70361	0.00037734	536.2971087518108	40.872	0.20756	40.803	40.673	40.881	-0.069626					5	3	2	0	0	0	0.71224	1	15453	15453		19.362	2.249	1	22373000			36960	3403	23657	23780	35557	35557					0.04694956259686478
VMYGFDYG	8	Unmodified	_VMYGFDYG_					0	0	0			REV__nc|ENSG00000155508|Q9UFF9-2|CNOT8	REV__nc|ENSG00000155508|Q9UFF9-2|CNOT8	MSMS	HCT116MG_D190212_S1	1	476.1985168457031	2	476.199479	950.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.554	1	10.554	10.054	11.054	0								0	0	0	0.8837	1	3247	3247		2.5775	0	1		+		36961	12701	23658	23781	35558	35558					-0.09277214545318202
VNDAHLLQY	9	Unmodified	_VNDAHLLQY_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	HCT116MG_D190212_S1	1	536.7742919921875	2	536.774731	1071.53491	0.39345	0.00021119	-0.79722	-0.00042793	-0.40377	-0.00021674	536.7742537378879	26.92	0.2604	26.92	26.761	27.022	0					9	4	3	0	0	0	0.47809	1	9783	9783		18.146	5.9057	1	11312000			36962	3164	23659	23782	35559	35559					0.00200268437856721
VNDDVLKRL	9	Unmodified	_VNDDVLKRL_					0	0	0			REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	REV__nc|ENSG00000146426|Q8IVF5-4|TIAM2	MULTI-MSMS	HCT116MG_D190212_S2	2	536.3118286132812	2	536.31148	1070.60841	0.62688	0.0003362	0.14855	7.9668E-05	0.77543	0.00041587	536.3115258111256	27.197	0.26188	26.845	26.713	26.975	-0.35254					7	4	2	0	0	0	0.33687	1	9895	9895		26.884	4.1474	1	23524000	+		36963	12487	23660	23783	35560	35560					0.07592816880332975
VNDSGSDN	8	Unmodified	_VNDSGSDN_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;ANK3|p.K4020Rfs*45|4|0.35|ENSG00000151150|chr10:60068822-60068822|T/-|frameshift_variant;ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;ANK3|p.K3778Nfs*26|1|0.37|ENSG00000151150|chr10:60069547-60069547|T/-|frameshift_variant;ANK3|p.M3608Cfs*4|1|0.37|ENSG00000151150|chr10:60070059-60070059|T/-|frameshift_variant;ANK3|p.K3331Nfs*6|1|0.32|ENSG00000151150|chr10:60070888-60070888|T/-|frameshift_variant;ANK3|p.I3117Sfs*2|3|0.22|ENSG00000151150|chr10:60071532-60071532|T/-|frameshift_variant;ANK3|p.P2846Tfs*8|1|0.32|ENSG00000151150|chr10:60072346-60072347|-/C|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MSMS	HCT116MG_D190212_S1	1	404.15875244140625	2	404.159397	806.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.8245	1	8.8245	8.3245	9.3245	0								0	0	0	0.8837	1	2665	2665		0	0	1				36964	9934;129	23661	23784	35561	35561					-0.10665984614809076
VNDSGSDN	8	Unmodified	_VNDSGSDN_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;ANK3|p.K4020Rfs*45|4|0.35|ENSG00000151150|chr10:60068822-60068822|T/-|frameshift_variant;ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;ANK3|p.K3778Nfs*26|1|0.37|ENSG00000151150|chr10:60069547-60069547|T/-|frameshift_variant;ANK3|p.M3608Cfs*4|1|0.37|ENSG00000151150|chr10:60070059-60070059|T/-|frameshift_variant;ANK3|p.K3331Nfs*6|1|0.32|ENSG00000151150|chr10:60070888-60070888|T/-|frameshift_variant;ANK3|p.I3117Sfs*2|3|0.22|ENSG00000151150|chr10:60071532-60071532|T/-|frameshift_variant;ANK3|p.P2846Tfs*8|1|0.32|ENSG00000151150|chr10:60072346-60072347|-/C|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MSMS	HCT116MG_D190212_S3	3	404.15887451171875	2	404.159397	806.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9687	1	10.001	9.5013	10.501	0.032559								0	0	0	0.8837	1	3015	3015		0	0	1				36965	9934;129	23661	23784	35562	35562					-0.10665984614809076
VNDSGSDN	8	Unmodified	_VNDSGSDN_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.S4352Vfs*2|1|0.51|ENSG00000151150|chr10:60055669-60055670|-/C|frameshift_variant;ANK3|p.K4140Nfs*15|2|0.27|ENSG00000151150|chr10:60064188-60064188|T/-|frameshift_variant;ANK3|p.W4141Mfs*12|1|0.36|ENSG00000151150|chr10:60064187-60064188|-/T|frameshift_variant;ANK3|p.K4020Rfs*45|4|0.35|ENSG00000151150|chr10:60068822-60068822|T/-|frameshift_variant;ANK3|p.K2850Rfs*29|1|0.08|ENSG00000151150|chr10:60072332-60072332|T/-|frameshift_variant;ANK3|p.K3778Nfs*26|1|0.37|ENSG00000151150|chr10:60069547-60069547|T/-|frameshift_variant;ANK3|p.M3608Cfs*4|1|0.37|ENSG00000151150|chr10:60070059-60070059|T/-|frameshift_variant;ANK3|p.K3331Nfs*6|1|0.32|ENSG00000151150|chr10:60070888-60070888|T/-|frameshift_variant;ANK3|p.I3117Sfs*2|3|0.22|ENSG00000151150|chr10:60071532-60071532|T/-|frameshift_variant;ANK3|p.P2846Tfs*8|1|0.32|ENSG00000151150|chr10:60072346-60072347|-/C|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MSMS	HCT116MG_D190212_S4	4	404.1591491699219	2	404.159397	806.30424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4141	1	7.1725	6.6725	7.6725	-0.24153								0	0	0	0.8837	1	2269	2269		0	0	1				36966	9934;129	23661	23784	35563	35563					-0.10665984614809076
VNEALITV	8	Unmodified	_VNEALITV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	HCT116MG_D190212_S2	2	858.4935913085938	1	858.49311	857.485833	0.74907	0.00064308	-0.20374	-0.00017491	0.54533	0.00046816	858.4928437962835	45.975	0.30829	45.874	45.658	45.966	-0.10139					8	5	2	0	0	0	0.14283	1	17501	17501		85.272	3.6589	1	14521000	+		36967	12706	23662	23785	35564	35564					0.051389801488994635
VNEYTQDTEEE	11	Unmodified	_VNEYTQDTEEE_					0	0	0			REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	MSMS	HCT116MG_D190212_S4	4	678.773193359375	2	678.775519	1355.53648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.588	1	15.426	14.926	15.926	-0.16173								0	0	0	0.95731	1	5037	5037		2.4985	0.21571	1		+		36968	17145	23663	23786	35565	35565					-0.12706231845368166
VNGGGVAK	8	Unmodified	_VNGGGVAK_					0	0	0		tr|U7SZX4|U7SZX4_FUSNULargeribosomalsubunitproteinbL19OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplSPE=3SV=1	tr|U7SZX4|U7SZX4_FUSNULargeribosomalsubunitproteinbL19OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplSPE=3SV=1	tr|U7SZX4|U7SZX4_FUSNULargeribosomalsubunitproteinbL19OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplSPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	351.2001037597656	2	351.20067	700.386788	-0.18114	-6.3618E-05	-1.2135	-0.00042618	-1.3946	-0.00048979	351.2000537458776	44.349	0.57642	44.264	44.063	44.639	-0.084797					12	10	2	0	0	0	0.87635	1	16890	16890		0.69038	0	1	20687000			36969	18540	23664	23787	35566	35566					0.02461001974654664
VNGGGVAK	8	Unmodified	_VNGGGVAK_					0	0	0		tr|U7SZX4|U7SZX4_FUSNULargeribosomalsubunitproteinbL19OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplSPE=3SV=1	tr|U7SZX4|U7SZX4_FUSNULargeribosomalsubunitproteinbL19OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplSPE=3SV=1	tr|U7SZX4|U7SZX4_FUSNULargeribosomalsubunitproteinbL19OS=FusobacteriumnucleatumCTI-5OX=1316586GN=rplSPE=3SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	351.20067	700.386788	-0.028782	-1.0108E-05	-1.7668	-0.00062049	-1.7956	-0.0006306	351.199979365262	44.749	1.1138	44.375	43.977	45.091	-0.37326	0.055443	-3.3584E-05	NaN	0.69038	52	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19719000			36970	18540	23664	23787							0.02461001974654664
VNGQPQPELAP	11	Unmodified	_VNGQPQPELAP_					0	0	0			REV__SIGLEC10|p.S384Tfs*8|1|0.39|ENSG00000142512|chr19:51415360-51415361|-/TG|frameshift_variant	REV__SIGLEC10|p.S384Tfs*8|1|0.39|ENSG00000142512|chr19:51415360-51415361|-/TG|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	383.8680114746094	3	383.868139	1148.58259	-0.20326	-7.8025E-05	0.019898	7.6382E-06	-0.18336	-7.0387E-05	383.86808911971303	11.184	0.36744	10.902	10.743	11.11	-0.28186					27	15	2	0	0	0	0.74191	1	3587	3587		2.8433	0	1	869240	+		36971	12355	23665	23788	35567	35567					0.014239226380595937
VNGRKIRLV	9	Unmodified	_VNGRKIRLV_					0	0	0		ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	MSMS	HCT116MG_D190212_S1	1	352.23297119140625	3	352.232975	1053.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.824	1	62.824	62.324	63.324	0								0	0	0	0.77025	1	24266	24266		0	0	1				36972	2514	23666	23789	35568	35568					0.15240525970671115
VNGRKIRLV	9	Unmodified	_VNGRKIRLV_					0	0	0		ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	ENSG00000116350|ENST00000373795|SRSF4	MSMS	HCT116MG_D190212_S2	2	352.23272705078125	3	352.232975	1053.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.537	1	62.406	61.906	62.906	-0.13118								0	0	0	0.77025	1	24241	24241		0	0	1				36973	2514	23666	23789	35569	35569					0.15240525970671115
VNIADGKWHR	10	Unmodified	_VNIADGKWHR_					0	0	0		COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant;nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;COL11A1|p.N1709Ifs*76|1|0.32|ENSG00000060718|chr1:102879831-102879831|T/-|frameshift_variant;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1;COL11A1|p.P546Afs*9|1|0.23|ENSG00000060718|chr1:103008510-103008511|-/C|frameshift_variant;COL11A1|p.P546Lfs*87|2|0.28|ENSG00000060718|chr1:103008511-103008511|C/-|frameshift_variant;COL11A1|p.G1096Vfs*102|1|0.07|ENSG00000060718|chr1:102940424-102940424|C/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	COL11A1|p.T1554Rfs*33|2|0.13|ENSG00000060718|chr1:102887005-102887005|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	598.7787475585938	2	598.320171	1194.62579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.895	1	24.895	24.395	25.395	0								0	0	0	0.93967	1	8932	8932		11.495	5.2889	1				36974	510	23667	23790	35570	35570					0.03626157205985692
VNIIAFCITF	10	Unmodified	_VNIIAFCITF_					0	0	0			REV__ENSG00000156959|ENST00000287585|LHFPL4	REV__ENSG00000156959|ENST00000287585|LHFPL4	MSMS	HCT116MG_D190212_S4	4	570.8114624023438	2	570.809728	1139.6049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.667	1	45.294	44.794	45.794	-0.37266								0	0	0	0.84701	1	16854	16854		22.736	0.98964	1		+		36975	12737	23668	23791	35571	35571					0.04068430782081123
VNIIIAFPP	9	Unmodified	_VNIIIAFPP_					0	0	0			REV__ENST00000475483.5_1_3:141595089-141622464:+|nuORF	REV__ENST00000475483.5_1_3:141595089-141622464:+|nuORF	MSMS	HCT116MG_D190212_S3	3	492.3014221191406	2	492.299853	982.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.415	1	29.188	28.688	29.688	-0.22675								0	0	0	0.768	1	10685	10685		7.9102	0	1		+		36976	15905	23669	23792	35572	35572					0.09316422833660454
VNINYNALAPA	11	Unmodified	_VNINYNALAPA_					0	0	0			REV__ENSG00000169605|ENST00000377938|GKN1	REV__ENSG00000169605|ENST00000377938|GKN1	MSMS	HCT116MG_D190212_S4	4	387.2071533203125	3	387.208384	1158.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.569	1	30.205	29.705	30.705	-0.36416								0	0	0	0.95954	1	11063	11063		0.45452	0	1		+		36977	13252	23670	23793	35573	35573					0.030365130177187893
VNIPVLKVRKE	11	Unmodified	_VNIPVLKVRKE_					0	0	0		ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	MSMS	HCT116MG_D190212_S3	3	432.28009033203125	3	432.278362	1293.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.122	1	48.806	48.306	49.306	-0.31596								0	0	0	0.95996	1	18490	18490		1.1098	0	1				36978	2948	23671	23794	35574	35574					0.17810175690669894
VNIWRKRTRKI	11	Unmodified	_VNIWRKRTRKI_					0	0	0		ENST00000534796.5_1_1:32396577-32396640:-|nuORF	ENST00000534796.5_1_1:32396577-32396640:-|nuORF	ENST00000534796.5_1_1:32396577-32396640:-|nuORF	MSMS	HCT116MG_D190212_S1	1	735.4630737304688	2	735.462419	1468.91028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.289	1	60.289	59.789	60.789	0								0	0	0	0.96149	1	23237	23237		0.30703	0.03801	1				36979	8656	23672	23795	35575	35575					0.19458582690344883
VNKDKGRP	8	Unmodified	_VNKDKGRP_					0	0	0		nc|ENSG00000165138|Q68DC2-4|ANKS6;ENSG00000165138|ENST00000353234|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	MULTI-SECPEP	HCT116MG_D190212_S1	1	457.60821533203125	2	457.264333	912.514114	-0.063306	-2.8948E-05	-0.081226	-3.7142E-05	-0.14453	-6.609E-05	457.2641385543277	51.066	0.20719	51.066	50.936	51.143	0					5	3	2	0	0	0	0.33185	1	19490	19490		4.756	0	1	7590100			36980	4752	23673	23796	35576	35576					0.05435722848858404
VNKEFIDIA	9	Unmodified	_VNKEFIDIA_					0	0	0			REV__tr|U7SWN0|U7SWN0_FUSNUDUF4037domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01106PE=4SV=1	REV__tr|U7SWN0|U7SWN0_FUSNUDUF4037domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01106PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	350.1946105957031	3	350.193963	1047.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.352	1	47.985	47.485	48.485	-0.36728								0	0	0	0.76973	1	17905	17905		0.96228	0	1		+		36981	17853	23674	23797	35577	35577					0.03818323240443533
VNKGGIGK	8	Unmodified	_VNKGGIGK_					0	0	0		tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1;tr|U7SJH9|U7SJH9_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02204PE=4SV=1	tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	tr|U7SS40|U7SS40_FUSNUAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01533PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	386.4802551269531	2	386.73742	771.460287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6414	1	9.6414	9.1414	10.141	0								0	0	0	0.8837	1	2927	2927		2.5775	0	1				36982	18409	23675	23798	35578	35578					0.06541550417136932
VNKKKKSFLSP	11	Unmodified	_VNKKKKSFLSP_					0	0	0			REV__nc|ENSG00000165806|P55210-2|CASP7;REV__nc|ENSG00000165806|P55210-3|CASP7	REV__nc|ENSG00000165806|P55210-3|CASP7	MSMS	HCT116MG_D190212_S4	4	638.6546020507812	2	638.392805	1274.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.536	1	43.161	42.661	43.661	-0.37433								0	0	0	0.95113	1	16006	16006		5.7319	0	1		+		36983	17195;13077	23676	23799	35579	35579					0.14466200282345199
VNKLKQRVKMG	11	Unmodified	_VNKLKQRVKMG_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	434.2676696777344	3	434.26758	1299.78091	0.08056	3.4985E-05	-0.40813	-0.00017724	-0.32757	-0.00014225	434.26734505980437	52.613	0.46198	52.613	52.28	52.742	0					13	8	3	0	0	0	0.74191	1	20112	20112		1.3296	0.11481	1	45621000	+		36984	9993	23677	23800	35580	35580					0.1430106501602495
VNKLYWDFTKC	11	Unmodified	_VNKLYWDFTKC_					0	0	0			REV__ENSG00000130035|ENST00000252318|GALNT8	REV__ENSG00000130035|ENST00000252318|GALNT8	MULTI-SECPEP	HCT116MG_D190212_S3	3	472.2460021972656	3	472.904196	1415.69076	0.17544	8.2964E-05	-0.603	-0.00028516	-0.42757	-0.0002022	472.9038531925914	19.279	0.20831	19.339	19.229	19.438	0.059828					5	3	2	0	0	0	0.36598	1	6619	6619		1.2148	0.80657	1	1086300	+		36985	11903	23678	23801	35581	35581					-0.0004602910303219687
VNLCRAIFAFM	11	Unmodified	_VNLCRAIFAFM_					0	0	0			REV__ENSG00000085377|ENST00000652536|PREP	REV__ENSG00000085377|ENST00000652536|PREP	MSMS	HCT116MG_D190212_S2	2	428.8913269042969	3	428.891233	1283.65187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3899	1	5.2417	4.7417	5.7417	-0.14816								0	0	0	0.96208	1	1704	1704		0	0	1		+		36986	10920	23679	23802	35582	35582					0.021389670615690193
VNLDDYNIHVI	11	Unmodified	_VNLDDYNIHVI_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MSMS	HCT116MG_D190212_S1	1	657.83642578125	2	657.838059	1313.66157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.132	1	36.132	35.632	36.632	0								0	0	0	0.58477	1	13462	13462		43.772	15.278	1				36987	1179	23680	23803	35583	35583					0.017281498723150435
VNLEDYPKY	9	Unmodified	_VNLEDYPKY_					0	0	0		tr|U7SUX9|U7SUX9_FUSNUThreoninealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01431PE=3SV=1	tr|U7SUX9|U7SUX9_FUSNUThreoninealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01431PE=3SV=1	tr|U7SUX9|U7SUX9_FUSNUThreoninealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01431PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	570.7799682617188	2	570.782222	1139.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.555	1	24.555	24.055	25.055	0								0	0	0	0.57787	1	8795	8795		24.991	2.2547	1				36988	18481	23681	23804	35584	35584					-0.01430284484808908
VNLKKLIVK	9	Unmodified	_VNLKKLIVK_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	HCT116MG_D190212_S1	1	527.8717651367188	2	527.870977	1053.7274	0.44163	0.00023313	0.56784	0.00029974	1.0095	0.00053287	527.8713835086968	54.409	0.20264	54.409	54.282	54.485	0					5	3	2	0	0	0	0.76814	1	20889	20889		0.52476	0	1	46743000			36989	2344	23682	23805	35585	35585					0.20268635575848748
VNLLCRLIKLD	11	Unmodified	_VNLLCRLIKLD_					0	0	0			REV__NEK10|p.R31I|1|0.23|ENSG00000163491|chr3:27352505-27352505|C/A|missense_variant	REV__NEK10|p.R31I|1|0.23|ENSG00000163491|chr3:27352505-27352505|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	434.2670593261719	3	433.932086	1298.77443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.801	1	52.801	52.301	53.301	0								0	0	0	0.9598	1	20205	20205		0.40827	0	1		+		36990	17345	23683	23806	35586	35586					0.13699127064683125
VNLLSKAT	8	Unmodified	_VNLLSKAT_					0	0	0		ABCC9|p.G773Wfs*5|1|0.09|ENSG00000069431|chr12:21862975-21862976|-/A|frameshift_variant;ABCC9|p.K1412Nfs*11|1|0.08|ENSG00000069431|chr12:21809931-21809931|T/-|frameshift_variant;nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9	ABCC9|p.G773Wfs*5|1|0.09|ENSG00000069431|chr12:21862975-21862976|-/A|frameshift_variant	ABCC9|p.G773Wfs*5|1|0.09|ENSG00000069431|chr12:21862975-21862976|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	423.2568664550781	2	423.258185	844.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.827	1	45.455	44.955	45.955	-0.37206								0	0	0	0.8837	1	16919	16919		4.756	0	1				36991	11	23684	23807	35587	35587					0.07334686385797795
VNLLVLLLVSP	11	Unmodified	_VNLLVLLLVSP_					0	0	0			REV__ENST00000466898.1_1_3:113658724-113658844:+|nuORF	REV__ENST00000466898.1_1_3:113658724-113658844:+|nuORF	MSMS	HCT116MG_D190212_S2	2	590.391357421875	2	590.389199	1178.76385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.374	1	58.204	57.704	58.704	-0.1703								0	0	0	0.96003	1	22559	22559		1.0715	0.5467	1		+		36992	15830	23685	23808	35588	35588					0.18161467681898102
VNLRIQNLI	9	Unmodified	_VNLRIQNLI_					0	0	0		CCDC88C|p.T79I|1|0.25|ENSG00000015133|chr14:91408693-91408693|G/A|missense_variant	CCDC88C|p.T79I|1|0.25|ENSG00000015133|chr14:91408693-91408693|G/A|missense_variant	CCDC88C|p.T79I|1|0.25|ENSG00000015133|chr14:91408693-91408693|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	541.394775390625	2	541.837665	1081.66078	0.42281	0.0002291	-0.086918	-4.7096E-05	0.33589	0.000182	541.8374812532096	60.62	0.5651	60.62	60.439	61.004	0					17	10	2	0	0	0	0.27049	1	23417	23417		0.52476	0	1	102470000			36993	358	23686	23809	35589	35589					0.1232140001393418
VNLRLFIFEG	10	Unmodified	_VNLRLFIFEG_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MSMS	HCT116MG_D190212_S2	2	403.2325744628906	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.663	1	64.55	64.05	65.05	-0.11256								0	0	0	0.97054	1	25004	25004		0.13989	0	1		+		36994	10963	23687	23810	35590	35590					0.08102266811101799
VNLSLFYVGPV	11	Unmodified	_VNLSLFYVGPV_					0	0	0			REV__ENSG00000184471|ENST00000328449|C1QTNF8	REV__ENSG00000184471|ENST00000328449|C1QTNF8	MSMS	HCT116MG_D190212_S4	4	604.3385009765625	2	604.339707	1206.66486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.779	1	51.429	50.929	51.929	-0.35028								0	0	0	0.95581	1	19282	19282		3.2813	0.78282	1		+		36995	13801	23688	23811	35591	35591					0.06979444716989747
VNLSNGLL	8	Unmodified	_VNLSNGLL_					0	0	0			REV__nc|ENSG00000107614|O14717-3|TRDMT1	REV__nc|ENSG00000107614|O14717-3|TRDMT1	MSMS	HCT116MG_D190212_S4	4	415.24127197265625	2	415.242535	828.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.212	1	43.838	43.338	44.338	-0.37373								0	0	0	0.8837	1	16280	16280		2.5775	0	1		+		36996	11323	23689	23812	35592	35592					0.049421133517171256
VNLSSGPDSLE	11	Unmodified	_VNLSSGPDSLE_					0	0	0			REV__ENST00000451179.5_1_2:114013122-114020997:+|nuORF	REV__ENST00000451179.5_1_2:114013122-114020997:+|nuORF	MSMS	HCT116MG_D190212_S2	2	558.7986450195312	2	559.272218	1116.52988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.234	1	25.872	25.372	26.372	-0.36164								0	0	0	0.91257	1	9482	9482		18.373	1.2602	1		+		36997	15534	23690	23813	35593	35593					-0.023720802154457488
VNMDEAWQE	9	Unmodified	_VNMDEAWQE_					0	0	0		ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	561.2303466796875	2	561.232039	1120.44952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.915	1	34.618	34.118	35.118	-0.29707								0	0	0	0.7663	1	12869	12869		13.906	0.86358	1				36998	230	23691	23814	35594	35594					-0.10588264810098735
VNMDEAWQE	9	Unmodified	_VNMDEAWQE_					0	0	0		ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	ATP8B3|p.T1172Rfs*12|1|0.27|ENSG00000130270|chr19:1785178-1785178|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	561.2312622070312	2	561.232039	1120.44952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.917	1	39.616	39.116	40.116	-0.30137								0	0	0	0.7663	1	14804	14804		13.906	0	1				36999	230	23691	23814	35595	35595					-0.10588264810098735
VNMPKTGH	8	Unmodified	_VNMPKTGH_					0	0	0			REV__ENST00000437590.2_1_10:43977899-43978070:+|nuORF	REV__ENST00000437590.2_1_10:43977899-43978070:+|nuORF	MSMS	HCT116MG_D190212_S4	4	442.2279968261719	2	442.226362	882.438172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.177	1	35.791	35.291	36.291	-0.38558								0	0	0	0.8837	1	13229	13229		12.532	0.89125	1		+		37000	15632	23692	23815	35596	35596					-0.007749973229238094
VNNNEEQIW	9	Unmodified	_VNNNEEQIW_					0	0	0			REV__RMI1|p.L43S|1|0.24|ENSG00000178966|chr9:84001114-84001114|T/C|missense_variant	REV__RMI1|p.L43S|1|0.24|ENSG00000178966|chr9:84001114-84001114|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	573.2648315429688	2	573.264727	1144.5149	0.51678	0.00029625	-0.0014633	-8.3885E-07	0.51532	0.00029541	573.2647448047901	30.293	0.76335	30.043	29.383	30.147	-0.24946					22	15	2	0	0	0	0.59184	1	10983	10983		11.64	3.7301	1	11086000	+		37001	13618	23693	23816	35597	35597					-0.051575272927721016
VNPVGPVV	8	Unmodified	_VNPVGPVV_					0	0	0			REV__ENSG00000196428|ENST00000688009|TSC22D2	REV__ENSG00000196428|ENST00000688009|TSC22D2	MSMS	HCT116MG_D190212_S4	4	390.7330627441406	2	390.734346	779.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.857	1	48.492	47.992	48.992	-0.365								0	0	0	0.8837	1	18103	18103		0.79363	0	1		+		37002	14021	23694	23817	35598	35598					0.055590321856129776
VNRFGHIG	8	Unmodified	_VNRFGHIG_					0	0	0		ENST00000447061.2_1_2:38512560-38513046:+|nuORF	ENST00000447061.2_1_2:38512560-38513046:+|nuORF	ENST00000447061.2_1_2:38512560-38513046:+|nuORF	MSMS	HCT116MG_D190212_S1	1	450.24603271484375	2	450.245944	898.477334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.831	1	11.831	11.331	12.331	0								0	0	0	0.8837	1	3758	3758		0	0	1				37003	7957	23695	23818	35599	35599					0.024034710229557277
VNRILRRIPTR	11	Unmodified	_VNRILRRIPTR_					0	0	0			REV__nc|ENSG00000204904|Q5VT33|LINC01545	REV__nc|ENSG00000204904|Q5VT33|LINC01545	MSMS	HCT116MG_D190212_S1	1	697.4481811523438	2	697.446769	1392.87898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.266	1	57.266	56.766	57.766	0								0	0	0	0.9598	1	22033	22033		1.1933	0.84271	1		+		37004	17269	23696	23819	35600	35600					0.1982600965623078
VNRLLVKGLP	10	Unmodified	_VNRLLVKGLP_					0	0	0			REV__ENST00000532163.5_1_11:111946298-111946382:+|nuORF	REV__ENST00000532163.5_1_11:111946298-111946382:+|nuORF	MSMS	HCT116MG_D190212_S4	4	370.2436828613281	3	370.244881	1107.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.814	1	37.431	36.931	37.931	-0.38283								0	0	0	0.96804	1	13854	13854		0.69767	0.42865	1		+		37005	12587	23697	23820	35601	35601					0.1632656342771952
VNRWDWCEP	9	Unmodified	_VNRWDWCEP_					0	0	0		ENST00000461944.1_1_2:233749896-233752811:-|nuORF	ENST00000461944.1_1_2:233749896-233752811:-|nuORF	ENST00000461944.1_1_2:233749896-233752811:-|nuORF	MSMS	HCT116MG_D190212_S4	4	402.17999267578125	3	402.178319	1203.51313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4339	1	6.1771	5.6771	6.6771	-0.25684								0	0	0	0.7701	1	1969	1969		0.23584	0.15249	1				37006	8062	23698	23821	35602	35602					-0.08048859582368095
VNSVIKSVEH	10	Unmodified	_VNSVIKSVEH_					0	0	0			REV__ENSG00000154114|ENST00000683345|TBCEL	REV__ENSG00000154114|ENST00000683345|TBCEL	MSMS	HCT116MG_D190212_S1	1	556.3092041015625	2	556.308938	1110.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.049	1	22.049	21.549	22.549	0								0	0	0	0.88261	1	7787	7787		18.146	0	1		+		37007	12669	23699	23822	35603	35603					0.0524451301771478
VNTDEILLQY	10	Unmodified	_VNTDEILLQY_					0	0	0		tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	tr|U7SJI7|U7SJI7_FUSNUCRISPR-associatedproteinCsh1OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02169PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	604.3140869140625	2	604.313886	1206.61322	0.67348	0.00040699	-1.0146	-0.00061311	-0.34107	-0.00020612	604.3133177582301	46.2	0.30875	46.098	45.966	46.275	-0.1014					12	5	3	0	0	0	0.40349	1	17634	17634		41.956	9.1699	1	25839000			37008	18316	23700	23823	35604	35604					0.01817656232447007
VNVEETGPQPQ	11	Unmodified	_VNVEETGPQPQ_					0	0	0			REV__ENST00000249016.4_1_22:41075309-41075447:+|nuORF	REV__ENST00000249016.4_1_22:41075309-41075447:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	599.7929077148438	2	599.290942	1196.56733	0.44162	0.00026466	0.30018	0.0001799	0.7418	0.00044455	599.7925754310912	25.066	0.36676	25.066	24.882	25.249	0					11	6	2	0	0	0	0.70332	1	9038	9038		20.581	0.1664	1	4271100	+		37009	14580	23701	23824	35605	35605					-0.023089889497896365
VNVLNMHHI	9	Unmodified	_VNVLNMHHI_					0	0	0			REV__ENST00000523638.5_1_19:37006176-37006239:-|nuORF	REV__ENST00000523638.5_1_19:37006176-37006239:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	539.3192138671875	2	538.787118	1075.55968	0.51411	0.000277	-2.3358	-0.0012585	-1.8217	-0.00098152	538.7862142162332	55.587	0.30921	55.402	55.174	55.483	-0.18565					12	5	4	0	0	0	0.25874	1	21353	21353		11.64	2.2929	1	21595000	+		37010	16256	23702	23825	35606	35606					0.02492625039599261
VPAAELRP	8	Unmodified	_VPAAELRP_					0	0	0		ENST00000468135.5_1_1:32542222-32557503:+|nuORF;ENST00000487305.5_1_1:32541329-32557503:+|nuORF;nc|ENSG00000121775|Q9GZU3-2|TMEM39B	ENST00000468135.5_1_1:32542222-32557503:+|nuORF	ENST00000468135.5_1_1:32542222-32557503:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	426.75042724609375	2	426.750527	851.486502	0.13675	5.8359E-05	-0.12886	-5.4992E-05	0.0078893	3.3668E-06	426.75035624473963	26.664	0.20777	26.363	26.286	26.493	-0.30087					5	3	2	0	0	0	0.6854	1	9543	9543		24.674	0	1	1695100			37011	8124	23703	23826	35607	35607					0.05481819588601411
VPAAELRP	8	Unmodified	_VPAAELRP_					0	0	0		ENST00000468135.5_1_1:32542222-32557503:+|nuORF;ENST00000487305.5_1_1:32541329-32557503:+|nuORF;nc|ENSG00000121775|Q9GZU3-2|TMEM39B	ENST00000468135.5_1_1:32542222-32557503:+|nuORF	ENST00000468135.5_1_1:32542222-32557503:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	426.750527	851.486502	0.086173	3.6774E-05	-0.42918	-0.00018315	-0.34301	-0.00014638	426.7501403853216	26.371	0.15642	26.371	26.24	26.397	0	0.0036498	-0.00017649	NaN	24.674	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1989600			37012	8124	23703	23826							0.05481819588601411
VPAAGRVP	8	Unmodified	_VPAAGRVP_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MSMS	HCT116MG_D190212_S2	2	383.7320556640625	2	383.732138	765.449723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.024	1	24.649	24.149	25.149	-0.37521								0	0	0	0.8837	1	8993	8993		6.3541	0	1				37013	1105	23704	23827	35608	35608					0.05761567762692721
VPAASFAA	8	Unmodified	_VPAASFAA_					0	0	0			REV__ENSG00000170004|ENST00000330494|CHD3	REV__ENSG00000170004|ENST00000330494|CHD3	MSMS	HCT116MG_D190212_S4	4	367.196044921875	2	367.197596	732.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.182	1	28.841	28.341	29.341	-0.34059								0	0	0	0.8837	1	10527	10527		6.3541	0	1		+		37014	13275	23705	23828	35609	35609					0.0037448374313271415
VPAASFAA	8	Unmodified	_VPAASFAA_					0	0	0			REV__ENSG00000170004|ENST00000330494|CHD3	REV__ENSG00000170004|ENST00000330494|CHD3	MSMS	HCT116MG_D190212_S4	4	367.1962890625	2	367.197596	732.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.328	1	28.979	28.479	29.479	-0.34921								0	0	0	0.8837	1	10586	10586		6.3541	0	1		+		37015	13275	23705	23828	35610	35610					0.0037448374313271415
VPADDGTTRSP	11	Unmodified	_VPADDGTTRSP_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-SECPEP	HCT116MG_D190212_S4	4	558.2890014648438	2	558.27001	1114.52547	0.20493	0.00011441	-0.89678	-0.00050064	-0.69184	-0.00038624	558.7700800136909	22.559	0.4163	22.321	22.133	22.55	-0.23758					9	7	2	0	0	0	0.35307	1	7907	7907		5.7319	0	1	2492900			37016	3856	23706	23829	35611	35611					-0.02721544638325213
VPAEHYRP	8	Unmodified	_VPAEHYRP_					0	0	0			REV__ENST00000540594.5_1_15:34439399-34502250:-|nuORF	REV__ENST00000540594.5_1_15:34439399-34502250:-|nuORF	MSMS	HCT116MG_D190212_S1	1	484.75091552734375	2	484.751059	967.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.236	1	34.236	33.736	34.736	0								0	0	0	0.8837	1	12696	12696		8.5933	1.304	1		+		37017	16362	23707	23830	35612	35612					0.0025203395750850177
VPAFEIRRARR	11	Unmodified	_VPAFEIRRARR_					0	0	0		ENSG00000174684|ENST00000311181|B4GAT1	ENSG00000174684|ENST00000311181|B4GAT1	ENSG00000174684|ENST00000311181|B4GAT1	MSMS	HCT116MG_D190212_S2	2	685.9089965820312	2	685.910019	1369.80549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.256	1	52.069	51.569	52.569	-0.18725								0	0	0	0.95581	1	20069	20069		3.2813	0	1				37018	5341	23708	23831	35613	35613					0.1353746121376389
VPAGGLVATLQ	11	Unmodified	_VPAGGLVATLQ_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MSMS	HCT116MG_D190212_S4	4	513.3031616210938	2	513.303124	1024.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.583	1	29.234	28.734	29.734	-0.34921								0	0	0	0.89642	1	10689	10689		20.454	0.039092	1				37019	2944	23709	23832	35614	35614					0.0803831599437217
VPAGGSGLA	9	Unmodified	_VPAGGSGLA_					0	0	0		OXCT2|p.P256Rfs*7|1|0.16|ENSG00000198754|chr1:39770489-39770490|GG/-|frameshift_variant;ENSG00000198754|ENST00000327582|OXCT2	OXCT2|p.P256Rfs*7|1|0.16|ENSG00000198754|chr1:39770489-39770490|GG/-|frameshift_variant	OXCT2|p.P256Rfs*7|1|0.16|ENSG00000198754|chr1:39770489-39770490|GG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	728.3945922851562	1	728.39373	727.386454	0.52022	0.00037892	0.78101	0.00056888	1.3012	0.0009478	728.3942332097037	33.724	0.51879	33.434	33.096	33.615	-0.29013					14	9	3	0	0	0	0.22969	1	12421	12421		38.151	6.0342	1	3172800			37020	6265	23710	23833	35615	35615					0.011855822548000106
VPAGNAHL	8	Unmodified	_VPAGNAHL_					0	0	0		ENST00000571572.2_1_17:6353382-6353613:+|nuORF	ENST00000571572.2_1_17:6353382-6353613:+|nuORF	ENST00000571572.2_1_17:6353382-6353613:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	389.7138366699219	2	389.713945	777.413337	0.083968	3.2723E-05	-0.17659	-6.8819E-05	-0.092622	-3.6096E-05	389.7139785626539	22.085	0.51936	21.858	21.624	22.143	-0.22777					12	9	2	0	0	0	0.77285	1	7688	7688		14.582	1.0738	1	1476900			37021	8894	23711	23834	35616	35616					0.015726908659985384
VPAKALAA	8	Unmodified	_VPAKALAA_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	MSMS	HCT116MG_D190212_S3	3	370.7355651855469	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.621	1	52.314	51.814	52.814	-0.30639								0	0	0	0.8837	1	19897	19897		0	0	1		+		37022	12864	23712	23835	35617	35617					0.07907336048208435
VPAKALAA	8	Unmodified	_VPAKALAA_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	MSMS	HCT116MG_D190212_S3	3	370.7350158691406	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.298	1	62.067	61.567	62.567	-0.23129								0	0	0	0.8837	1	23796	23796		0	0	1		+		37023	12864	23712	23835	35618	35618					0.07907336048208435
VPAKALAA	8	Unmodified	_VPAKALAA_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	MSMS	HCT116MG_D190212_S4	4	370.7353820800781	2	370.736889	739.459225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.189	1	56.889	56.389	57.389	-0.3004								0	0	0	0.8837	1	21459	21459		0	0	1		+		37024	12864	23712	23835	35619	35619					0.07907336048208435
VPAPPLPA	8	Unmodified	_VPAPPLPA_					0	0	0		RIN3|p.V790Cfs*21|1|0.4|ENSG00000100599|chr14:92676507-92676507|G/-|frameshift_variant;nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3	RIN3|p.V790Cfs*21|1|0.4|ENSG00000100599|chr14:92676507-92676507|G/-|frameshift_variant	RIN3|p.V790Cfs*21|1|0.4|ENSG00000100599|chr14:92676507-92676507|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	381.230224609375	2	381.231439	760.448326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.9	1	54.712	54.212	55.212	-0.18797								0	0	0	0.8837	1	21148	21148		6.3541	0	1				37025	1720	23713	23836	35620	35620					0.05851933673932308
VPAVFMRLVFP	11	Unmodified	_VPAVFMRLVFP_					0	0	0		ENST00000329517.10_1_22:19776048-19776162:-|nuORF	ENST00000329517.10_1_22:19776048-19776162:-|nuORF	ENST00000329517.10_1_22:19776048-19776162:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	637.8667602539062	2	638.367744	1274.72094	0.47424	0.00030274	0.61473	0.00039242	1.089	0.00069516	638.3681989222963	54.355	0.52237	54.06	53.668	54.19	-0.29587					13	9	3	0	0	0	0.36452	1	20596	20596		3.5965	3.5965	1	8580600			37026	7155	23714	23837	35621	35621					0.09456374352794228
VPCCSCCC	8	Unmodified	_VPCCSCCC_					0	0	0			REV__ENSG00000169688|ENST00000334346|MT1B	REV__ENSG00000169688|ENST00000334346|MT1B	MSMS	HCT116MG_D190212_S3	3	408.93017578125	2	409.112123	816.209693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.379	1	14.459	13.959	14.959	0.079683								0	0	0	0.8837	1	4623	4623		0.79363	0	1		+		37027	13258	23715	23838	35622	35622					-0.2057632054966234
VPCMCCYV	8	Unmodified	_VPCMCCYV_					0	0	0		ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	ENSG00000166068|ENST00000299084|SPRED1	MSMS	HCT116MG_D190212_S4	4	459.17218017578125	2	459.173038	916.331523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.018	1	13.856	13.356	14.356	-0.16191								0	0	0	0.8837	1	4421	4421		0.79363	0	1				37028	4818	23716	23839	35623	35623					-0.1299895519563279
VPDLPPTTFG	10	Unmodified	_VPDLPPTTFG_					0	0	0			REV__ENSG00000173068|ENST00000380672|BNC2	REV__ENSG00000173068|ENST00000380672|BNC2	MSMS	HCT116MG_D190212_S4	4	522.2706909179688	2	522.274032	1042.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.879	1	36.494	35.994	36.994	-0.38486								0	0	0	0.92272	1	13513	13513		10.824	0	1		+		37029	13415	23717	23840	35624	35624					0.013946343490943036
VPDPAPVPLL	10	Unmodified	_VPDPAPVPLL_					0	0	0			REV__TBC1D12|p.K750Nfs*9|2|0.34|ENSG00000108239|chr10:94531446-94531446|A/-|frameshift_variant	REV__TBC1D12|p.K750Nfs*9|2|0.34|ENSG00000108239|chr10:94531446-94531446|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	509.3022155761719	2	509.302593	1016.59063	0.49366	0.00025142	-0.84374	-0.00042972	-0.35008	-0.0001783	509.3019941783145	48.608	0.51545	48.292	47.984	48.499	-0.31596					17	9	2	0	0	0	0.29592	1	18268	18268		50.855	6.9967	1	8828800	+		37030	11339	23718	23841	35625	35625					0.08300101625468415
VPDPAPVPLL	10	Unmodified	_VPDPAPVPLL_					0	0	0			REV__TBC1D12|p.K750Nfs*9|2|0.34|ENSG00000108239|chr10:94531446-94531446|A/-|frameshift_variant	REV__TBC1D12|p.K750Nfs*9|2|0.34|ENSG00000108239|chr10:94531446-94531446|A/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	509.302593	1016.59063	0.49366	0.00025142	-0.84374	-0.00042972	-0.35008	-0.0001783	509.3019941783145	48.608	0.51545	48.292	47.984	48.499	-0.31596	0.028396	-0.00014351	NaN	50.855	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8828800	+		37031	11339	23718	23841							0.08300101625468415
VPEDMPPP	8	Unmodified	_VPEDMPPP_					0	0	0		ENST00000597011.5_1_19:49309952-49314169:-|nuORF	ENST00000597011.5_1_19:49309952-49314169:-|nuORF	ENST00000597011.5_1_19:49309952-49314169:-|nuORF	MSMS	HCT116MG_D190212_S1	1	441.2054138183594	2	441.207304	880.400055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.754	1	46.754	46.254	47.254	0								0	0	0	0.70516	1	17747	17747		30.198	15.617	1				37032	9068	23719	23842	35626	35626					-0.04492928028264487
VPEKFEPTH	9	Unmodified	_VPEKFEPTH_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;SLC4A7|p.S1176Kfs*13|1|0.68|ENSG00000033867|chr3:27383191-27383192|-/C|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;SLC4A7|p.L1003Wfs*11|1|0.39|ENSG00000033867|chr3:27394600-27394600|A/-|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	MULTI-MSMS	HCT116MG_D190212_S1	1	361.8536376953125	3	361.85383	1082.53966	-0.10698	-3.8711E-05	-0.092645	-3.3524E-05	-0.19962	-7.2235E-05	361.8535341879558	30.27	0.19528	30.27	30.1	30.296	0					7	3	3	0	0	0	0.51829	1	11099	11099		15.248	5.0979	1	9718300			37033	976	23720	23843	35627	35627					0.0016915258061089844
VPEMEQVDV	9	Unmodified	_VPEMEQVDV_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	MULTI-SECPEP	HCT116MG_D190212_S2	2	522.771728515625	2	523.247157	1044.47976	0.61726	0.00032298	0.38741	0.00020271	1.0047	0.00052569	523.247272233709	27.404	0.41393	27.062	26.881	27.295	-0.34201					10	7	2	0	0	0	0.18783	1	10011	10011		28.487	4.6971	1	5957400	+		37034	10489	23721	23844	35628	35628					-0.04069906144923152
VPEMGLTF	8	Unmodified	_VPEMGLTF_					0	0	0		ENST00000356805.8_1_2:54896150-54896312:+|nuORF	ENST00000356805.8_1_2:54896150-54896312:+|nuORF	ENST00000356805.8_1_2:54896150-54896312:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	896.545654296875	1	893.443717	892.43644	1.0889	0.00097283	-0.25242	-0.00022552	0.83644	0.00074731	893.4435541297563	57.1	0.46725	56.921	56.739	57.207	-0.17904					20	8	4	0	0	0	0.77285	1	22033	22033		14.582	0	1	239750000			37035	7301	23722	23845	35629	35629					-0.01408051131556931
VPFPLLVG	8	Unmodified	_VPFPLLVG_					0	0	0			REV__TFR2|p.R704Tfs*88|1|0.29|ENSG00000106327|chr7:100626789-100626790|-/T|frameshift_variant	REV__TFR2|p.R704Tfs*88|1|0.29|ENSG00000106327|chr7:100626789-100626790|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	421.26275634765625	2	421.262739	840.510926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.946	1	15.029	14.529	15.529	0.083271								0	0	0	0.8837	1	4852	4852		2.8892	0	1		+		37036	17630	23723	23846	35630	35630					0.08429079742143131
VPGAVQPRG	9	Unmodified	_VPGAVQPRG_					0	0	0		ENST00000589683.5_1_17:40912832-40913857:+|nuORF;ENST00000588928.1_1_17:40912832-40913857:+|nuORF	ENST00000589683.5_1_17:40912832-40913857:+|nuORF	ENST00000589683.5_1_17:40912832-40913857:+|nuORF	MSMS	HCT116MG_D190212_S4	4	440.75372314453125	2	440.753601	879.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.253	1	24.973	24.473	25.473	-0.27958								0	0	0	0.64498	1	8940	8940		21.747	0.20967	1				37037	9016	23724	23847	35631	35631					0.04808337820145425
VPGDDPDD	8	Unmodified	_VPGDDPDD_					0	0	0			REV__nc|ENSG00000169682|Q9H2V7-5|SPNS1	REV__nc|ENSG00000169682|Q9H2V7-5|SPNS1	MSMS	HCT116MG_D190212_S2	2	415.1640625	2	415.164148	828.313742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.521	1	52.333	51.833	52.833	-0.18725								0	0	0	0.8837	1	20177	20177		2.8892	0	1		+		37038	13257	23725	23848	35632	35632					-0.10728216329277984
VPGDGVLG	8	Unmodified	_VPGDGVLG_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MSMS	HCT116MG_D190212_S3	3	357.1960144042969	2	357.195054	712.375555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.452	1	58.183	57.683	58.683	-0.26932								0	0	0	0.8837	1	22236	22236		2.8892	0	1		+		37039	17202	23726	23849	35633	35633					0.007861798805265607
VPGFFASL	8	Unmodified	_VPGFFASL_					0	0	0		NXF1|p.S494Cfs*29|1|0.38|ENSG00000162231|chr11:62795923-62795924|AG/-|frameshift_variant	NXF1|p.S494Cfs*29|1|0.38|ENSG00000162231|chr11:62795923-62795924|AG/-|frameshift_variant	NXF1|p.S494Cfs*29|1|0.38|ENSG00000162231|chr11:62795923-62795924|AG/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	418.7649230957031	2	419.228897	836.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.42	1	25.42	24.92	25.92	0								0	0	0	0.8837	1	9143	9143		10.183	3.8293	1				37040	9712	23727	23850	35634	35634					0.01847629811322804
VPGFPCHF	8	Unmodified	_VPGFPCHF_					0	0	0		ENSG00000169393|ENST00000339841|ELSPBP1	ENSG00000169393|ENST00000339841|ELSPBP1	ENSG00000169393|ENST00000339841|ELSPBP1	MSMS	HCT116MG_D190212_S4	4	452.2131042480469	2	452.212724	902.410894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.749	1	32.369	31.869	32.869	-0.37924								0	0	0	0.8837	1	11940	11940		6.3541	0	1				37041	5069	23728	23851	35635	35635					-0.04421480863322813
VPGGAGAP	8	Unmodified	_VPGGAGAP_					0	0	0			REV__ENST00000282388.3_2_2:43451527-43452328:-|nuORF	REV__ENST00000282388.3_2_2:43451527-43452328:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	625.3305053710938	1	625.330402	624.323125	0.51419	0.00032154	0.025805	1.6137E-05	0.53999	0.00033768	625.3302535134922	19.544	0.57154	19.174	18.94	19.511	-0.3695					17	10	3	0	0	0	0.84415	1	6783	6783		6.3541	0	1	117000000	+		37042	14724	23729	23852	35636	35636					-0.0040635846243048945
VPGGGISSYA	10	Unmodified	_VPGGGISSYA_					0	0	0		ENTPD2|p.G204Vfs*171|4|0.17|ENSG00000054179|chr9:137051065-137051065|C/-|frameshift_variant;nc|ENSG00000054179|Q9Y5L3-3|ENTPD2;nc|ENSG00000054179|Q9Y5L3-2|ENTPD2;ENSG00000054179|ENST00000355097|ENTPD2	ENTPD2|p.G204Vfs*171|4|0.17|ENSG00000054179|chr9:137051065-137051065|C/-|frameshift_variant	ENTPD2|p.G204Vfs*171|4|0.17|ENSG00000054179|chr9:137051065-137051065|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	908.455322265625	1	907.451973	906.444697	0.61971	0.00056236	1.5383	0.0013959	2.158	0.0019583	907.4519232860246	31.709	0.20841	31.439	31.326	31.534	-0.27028					8	3	3	0	0	0	0.59599	1	11616	11616		28.487	0	1	4510600			37043	1068	23730	23853	35637	35637					-0.012267808905789934
VPGICLRPPNV	11	Unmodified	_VPGICLRPPNV_					0	0	0			REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF	REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF	MSMS	HCT116MG_D190212_S4	4	582.8334350585938	2	582.831526	1163.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.105	1	50.75	50.25	51.25	-0.35483								0	0	0	0.94924	1	19010	19010		6.7232	0	1		+		37044	15156	23731	23854	35638	35638					0.07322040279223074
VPGICLRPPNV	11	Unmodified	_VPGICLRPPNV_					0	0	0			REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF	REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF	MSMS	HCT116MG_D190212_S4	4	582.8330078125	2	582.831526	1163.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.259	1	50.909	50.409	51.409	-0.35028								0	0	0	0.94924	1	19072	19072		6.7232	0	1		+		37045	15156	23731	23854	35639	35639					0.07322040279223074
VPGKAALA	8	Unmodified	_VPGKAALA_					0	0	0			REV__PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	REV__PRKDC|p.T3268Pfs*7|1|0.5|ENSG00000253729|chr8:47803426-47803426|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	363.7272033691406	2	363.729064	725.443575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.387	1	42.011	41.511	42.511	-0.37565								0	0	0	0.8837	1	15577	15577		0	0	1		+		37046	14388	23732	23855	35640	35640					0.06987049531164757
VPGKATKNRKY	11	Unmodified	_VPGKATKNRKY_					0	0	0		tr|U7SYQ8|U7SYQ8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00878PE=3SV=1	tr|U7SYQ8|U7SYQ8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00878PE=3SV=1	tr|U7SYQ8|U7SYQ8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00878PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	631.3717041015625	2	631.372404	1260.73025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.424	1	44.339	43.839	44.839	-0.084797								0	0	0	0.94924	1	16871	16871		6.7232	0	1				37047	18518	23733	23856	35641	35641					0.11031858962701335
VPGKEGIQYS	10	Unmodified	_VPGKEGIQYS_					0	0	0			REV__TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	REV__TOB1|p.F274Yfs*52|1|0.06|ENSG00000141232|chr17:50863197-50863198|-/CATGCAGT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	539.5501708984375	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.116	1	53.786	53.286	54.286	-0.32923								0	0	0	0.94107	1	20225	20225		6.7232	0.51738	1		+		37048	12325	23734	23857	35642	35642					0.015011352350256857
VPGPFGGI	8	Unmodified	_VPGPFGGI_					0	0	0			REV__COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant	REV__COL7A1|p.S2715Vfs*71|1|0.4|ENSG00000114270|chr3:48566991-48566991|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	372.1764831542969	2	372.207964	742.401375	-0.055626	-2.0704E-05	-0.29044	-0.00010811	-0.34607	-0.00012881	372.2077985737664	33.775	0.75984	33.485	33.011	33.771	-0.29013					18	14	2	0	0	0	0.33364	1	12231	12231		2.8892	2.0956	1	4286000	+		37049	10245	23735	23858	35643	35643					0.019870741228032784
VPGRLKLLKIL	11	Unmodified	_VPGRLKLLKIL_					0	0	0		ENST00000557374.1_1_14:52957560-53019203:-|nuORF	ENST00000557374.1_1_14:52957560-53019203:-|nuORF	ENST00000557374.1_1_14:52957560-53019203:-|nuORF	MSMS	HCT116MG_D190212_S1	1	417.2970886230469	3	417.295464	1248.86456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.845	1	35.845	35.345	36.345	0								0	0	0	0.95925	1	13347	13347		0.50596	0	1				37050	8795	23736	23859	35644	35644					0.2500854445538607
VPGRPRRRRRL	11	Unmodified	_VPGRPRRRRRL_					0	0	0			REV__ENST00000366641.3_1_1:231557909-231558050:-|nuORF	REV__ENST00000366641.3_1_1:231557909-231558050:-|nuORF	MSMS	HCT116MG_D190212_S3	3	710.3683471679688	2	709.955627	1417.8967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.889	1	50.576	50.076	51.076	-0.31381								0	0	0	0.95581	1	19201	19201		3.2813	0	1		+		37051	15109	23737	23860	35645	35645					0.20446769701766243
VPGRWLTFLRL	11	Unmodified	_VPGRWLTFLRL_					0	0	0			REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2	REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2	MSMS	HCT116MG_D190212_S3	3	679.8572998046875	2	679.408789	1356.80303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.181	1	50.87	50.37	51.37	-0.31166								0	0	0	0.95521	1	19319	19319		3.5965	0.31518	1		+		37052	12748	23738	23861	35646	35646					0.13889612756088354
VPGTLEPL	8	Unmodified	_VPGTLEPL_					0	0	0		ENST00000388995.10_2_17:18873583-18873697:-|nuORF	ENST00000388995.10_2_17:18873583-18873697:-|nuORF	ENST00000388995.10_2_17:18873583-18873697:-|nuORF	MSMS	HCT116MG_D190212_S3	3	413.2377014160156	2	413.239461	824.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.074	1	41.772	41.272	42.272	-0.30257								0	0	0	0.8837	1	15662	15662		2.8892	0	1				37053	7591	23739	23862	35647	35647					0.04511595120197853
VPGVKRRRLI	10	Unmodified	_VPGVKRRRLI_					0	0	0		BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant;BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant;ENSG00000178409|ENST00000369042|BEND3	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	597.4010009765625	2	597.401299	1192.78804	0.46123	0.00027554	-0.77066	-0.00046039	-0.30943	-0.00018485	597.4006255068717	58.42	0.40504	58.42	58.261	58.666	0					13	7	3	0	0	0	0.89248	1	22529	22529		0.45834	0	1	41565000			37054	262	23740	23863	35648	35648					0.1993616567879144
VPGVKRRRLI	10	Unmodified	_VPGVKRRRLI_					0	0	0		BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant;BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant;ENSG00000178409|ENST00000369042|BEND3	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	597.401299	1192.78804	0.46123	0.00027554	-0.77066	-0.00046039	-0.30943	-0.00018485	597.4006255068717	58.42	0.40504	58.42	58.261	58.666	0	0.07442	0.00029524	NaN	0.45834	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41565000			37055	262	23740	23863							0.1993616567879144
VPGVKRRRLI	10	Unmodified	_VPGVKRRRLI_					0	0	0		BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant;BEND3|p.E692Rfs*21|1|0.28|ENSG00000178409|chr6:107069117-107069118|-/G|frameshift_variant;ENSG00000178409|ENST00000369042|BEND3	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	BEND3|p.D265Tfs*54|3|0.29|ENSG00000178409|chr6:107070398-107070398|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	597.401299	1192.78804	0.72732	0.0004345	-1.6801	-0.0010037	-0.95274	-0.00056917	597.400156599797	58.441	0.15032	58.271	58.146	58.296	-0.1703	-0.07442	-0.00079131	NaN	0.45834	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11976000			37056	262	23740	23863							0.1993616567879144
VPGVKVRC	8	Unmodified	_VPGVKVRC_					0	0	0		ENST00000579960.1_3_X:151304446-151304512:-|nuORF	ENST00000579960.1_3_X:151304446-151304512:-|nuORF	ENST00000579960.1_3_X:151304446-151304512:-|nuORF	MSMS	HCT116MG_D190212_S4	4	429.2040100097656	2	429.254923	856.495293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.01	1	22.772	22.272	23.272	-0.23758								0	0	0	0.8837	1	8035	8035		11.114	4.7604	1				37057	8950	23741	23864	35649	35649					0.06130469953438933
VPHAVVCI	8	Unmodified	_VPHAVVCI_					0	0	0		ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	HCT116MG_D190212_S1	1	418.73486328125	2	419.236199	836.457844	0.095902	4.0206E-05	0.846	0.00035467	0.9419	0.00039488	419.23660223190416	20.982	0.2668	20.982	20.8	21.067	0					6	4	2	0	0	0	0.32196	1	7363	7363		0.79363	0	1	10943000			37058	3981	23742	23865	35650	35650					0.03307378687827622
VPHLEDQRSKL	11	Unmodified	_VPHLEDQRSKL_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	HCT116MG_D190212_S1	1	661.3653564453125	2	661.364776	1320.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.218	1	16.218	15.718	16.718	0								0	0	0	0.95521	1	5443	5443		3.5965	0	1				37059	5848	23743	23866	35651	35651					0.06746947374836054
VPHLRGSK	8	Unmodified	_VPHLRGSK_					0	0	0			REV__MOCOS|p.T229M|1|0.08|ENSG00000075643|chr18:36200069-36200069|C/T|missense_variant	REV__MOCOS|p.T229M|1|0.08|ENSG00000075643|chr18:36200069-36200069|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	447.27032470703125	2	447.269419	892.524284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.352	1	42.978	42.478	43.478	-0.37433								0	0	0	0.8837	1	15934	15934		2.3027	0	1		+		37060	10811	23744	23867	35652	35652					0.07372330574082753
VPHPVSLG	8	Unmodified	_VPHPVSLG_					0	0	0			REV__ENST00000209929.9_1_1:171173065-171173173:+|nuORF	REV__ENST00000209929.9_1_1:171173065-171173173:+|nuORF	MSMS	HCT116MG_D190212_S1	1	403.23284912109375	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6227	1	7.6227	7.1227	8.1227	0								0	0	0	0.8837	1	2302	2302		0.69038	0	1		+		37061	14500	23745	23868	35653	35653					0.039341480428561226
VPIAEPDIA	9	Unmodified	_VPIAEPDIA_					0	0	0			REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-MSMS	HCT116MG_D190212_S1	1	926.5406494140625	1	924.503674	923.496398	0.91886	0.00084949	0.10941	0.00010115	1.0283	0.00095063	924.503643672856	52.254	0.30955	52.254	52.073	52.383	0					17	5	4	0	0	0	0.55919	1	19916	19916		13.508	0.97634	1	126400000	+		37062	10008	23746	23869	35654	35654					0.03158962803331633
VPIFVMLSL	9	Unmodified	_VPIFVMLSL_					0	0	0			REV__ENST00000212015.10_1_10:69644897-69647288:+|nuORF	REV__ENST00000212015.10_1_10:69644897-69647288:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	509.8041687011719	2	509.803914	1017.59328	0.50318	0.00025652	0.15237	7.7678E-05	0.65555	0.0003342	509.8037437814938	46.656	2.2652	46.545	45.648	47.913	-0.11122					129	43	5	0	0	0	0.65706	1	17491	17491		7.9102	0	1	83331000	+		37063	14501	23747	23870	35655	35655					0.08518233758786664
VPILLILVTAI	11	Unmodified	_VPILLILVTAI_					0	0	0		ENSG00000178789|ENST00000392621|CD300LB	ENSG00000178789|ENST00000392621|CD300LB	ENSG00000178789|ENST00000392621|CD300LB	MSMS	HCT116MG_D190212_S1	1	388.9376220703125	3	388.937054	1163.78933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.804	1	10.804	10.304	11.304	0								0	0	0	0.96208	1	3344	3344		0	0	1				37064	5517	23748	23871	35656	35656					0.2139894220433689
VPILLVLRKLI	11	Unmodified	_VPILLVLRKLI_					0	0	0			REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	REV__tr|U7SP71|U7SP71_FUSNUPeptide/nickeltransportsystempermeaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01750PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	426.3062438964844	3	426.307481	1275.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.035	1	60.035	59.535	60.535	0								0	0	0	0.96208	1	23135	23135		0	0	1		+		37065	17744	23749	23872	35657	35657					0.27370001632266394
VPIRYFGATY	10	Unmodified	_VPIRYFGATY_					0	0	0			REV__GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	REV__GRIN1|p.W768Lfs*32|1|0.27|ENSG00000176884|chr9:137163294-137163295|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	396.21282958984375	3	396.213358	1185.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.851	1	28.851	28.351	29.351	0								0	0	0	0.94149	1	10523	10523		6.6304	1.3335	1		+		37066	13555	23750	23873	35658	35658					0.03286004885694638
VPKAFAAS	8	Unmodified	_VPKAFAAS_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MSMS	HCT116MG_D190212_S4	4	395.725341796875	2	395.726521	789.438489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.322	1	53.998	53.498	54.498	-0.32349								0	0	0	0.8837	1	20308	20308		0.69038	0	1				37067	3545	23751	23874	35659	35659					0.035347456685599354
VPKKKDRLQR	10	Unmodified	_VPKKKDRLQR_					0	0	0			REV__ENSG00000221978|ENST00000400809|CCNL2	REV__ENSG00000221978|ENST00000400809|CCNL2	MSMS	HCT116MG_D190212_S1	1	423.27020263671875	3	423.270089	1266.78844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.947	1	21.947	21.447	22.447	0								0	0	0	0.95511	1	7746	7746		3.5871	0.74377	1		+		37068	14294	23752	23875	35660	35660					0.16571540607969837
VPKKVSEP	8	Unmodified	_VPKKVSEP_					0	0	0		ENST00000451663.5_1_21:15313179-15342301:-|nuORF	ENST00000451663.5_1_21:15313179-15342301:-|nuORF	ENST00000451663.5_1_21:15313179-15342301:-|nuORF	MSMS	HCT116MG_D190212_S4	4	442.2644958496094	2	442.26601	882.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.279	1	31.902	31.402	32.402	-0.37747								0	0	0	0.8837	1	11750	11750		6.3541	0	1				37069	7986	23753	23876	35661	35661					0.07150972902854846
VPKLAERVFEF	11	Unmodified	_VPKLAERVFEF_					0	0	0			REV__nc|ENSG00000163832|Q0PNE2-2|ELP6	REV__nc|ENSG00000163832|Q0PNE2-2|ELP6	MSMS	HCT116MG_D190212_S3	3	667.877685546875	2	667.876988	1333.73942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.548	1	49.233	48.733	49.733	-0.31596								0	0	0	0.95113	1	18661	18661		5.7319	0	1		+		37070	12954	23754	23877	35662	35662					0.0859020752836841
VPKTSVQP	8	Unmodified	_VPKTSVQP_					0	0	0		RIMS1|p.A298V|2|0.38|ENSG00000079841|chr6:72182364-72182364|C/T|missense_variant	RIMS1|p.A298V|2|0.38|ENSG00000079841|chr6:72182364-72182364|C/T|missense_variant	RIMS1|p.A298V|2|0.38|ENSG00000079841|chr6:72182364-72182364|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	428.25042724609375	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.261	1	22.876	22.376	23.376	-0.3852								0	0	0	0.8837	1	8281	8281		9.3474	0	1				37071	18109	23755	23878	35663	35663					0.053103998687561216
VPLAVSGF	8	Unmodified	_VPLAVSGF_					0	0	0			REV__CEP152|p.I1277Lfs*20|1|0.2|ENSG00000103995|chr15:48744246-48744246|T/-|frameshift_variant;REV__nc|ENSG00000103995|O94986-3|CEP152	REV__nc|ENSG00000103995|O94986-3|CEP152	MSMS	HCT116MG_D190212_S4	4	395.230712890625	2	395.228897	788.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.348	1	36.964	36.464	37.464	-0.3839								0	0	0	0.8837	1	13702	13702		2.8892	0	1		+		37072	10157;10158	23756	23879	35664	35664					0.04055629811341532
VPLERLGAPAP	11	Unmodified	_VPLERLGAPAP_					0	0	0		ENST00000532681.5_1_11:45939703-45939805:-|nuORF	ENST00000532681.5_1_11:45939703-45939805:-|nuORF	ENST00000532681.5_1_11:45939703-45939805:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	560.3300170898438	2	560.329673	1118.64479	0.34005	0.00019054	0.13748	7.7036E-05	0.47754	0.00026758	560.3296797865537	15.918	0.20804	16.003	15.873	16.081	0.085423					6	3	2	0	0	0	0.48359	1	5255	5255		47.594	11.088	1	2189300			37073	8638	23757	23880	35665	35665					0.09021693777026485
VPLERLGAPAP	11	Unmodified	_VPLERLGAPAP_					0	0	0		ENST00000532681.5_1_11:45939703-45939805:-|nuORF	ENST00000532681.5_1_11:45939703-45939805:-|nuORF	ENST00000532681.5_1_11:45939703-45939805:-|nuORF	MSMS	HCT116MG_D190212_S4	4	560.32958984375	2	560.329673	1118.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.237	1	16.073	15.573	16.573	-0.16364								0	0	0	0.74961	1	5299	5299		36.506	3.7205	1				37074	8638	23757	23880	35666	35666					0.09021693777026485
VPLKLHRIKI	10	Unmodified	_VPLKLHRIKI_					0	0	0		ENST00000372927.5_2_X:100356228-100357313:+|nuORF	ENST00000372927.5_2_X:100356228-100357313:+|nuORF	ENST00000372927.5_2_X:100356228-100357313:+|nuORF	MSMS	HCT116MG_D190212_S2	2	406.2800598144531	3	406.279926	1215.81795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.389	1	59.229	58.729	59.729	-0.16012								0	0	0	0.97045	1	22965	22965		0.15932	0.01943	1				37075	7469	23758	23881	35667	35667					0.21867104624107014
VPLLAPLAL	9	Unmodified	_VPLLAPLAL_					0	0	0			REV__ENSG00000243509|ENST00000369996|TNFRSF6B	REV__ENSG00000243509|ENST00000369996|TNFRSF6B	MULTI-MSMS	HCT116MG_D190212_S2	2	453.8048095703125	2	453.804771	905.59499	0.1888	8.568E-05	-0.14512	-6.5856E-05	0.043684	1.9824E-05	453.80462327235665	57.722	0.15524	57.547	57.418	57.574	-0.17494					4	2	2	0	0	0	0.24572	1	22303	22303		36.466	0	1	12252000	+		37076	14364	23759	23882	35668	35668					0.13841610839028817
VPLLILWRDK	10	Unmodified	_VPLLILWRDK_					0	0	0		ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	MSMS	HCT116MG_D190212_S4	4	418.2642517089844	3	418.264053	1251.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.699	1	32.32	31.82	32.82	-0.37924								0	0	0	0.96521	1	11920	11920		0.56317	0.32733	1				37077	6614	23760	23883	35669	35669					0.1545140563325731
VPLLLLPGSY	10	Unmodified	_VPLLLLPGSY_					0	0	0		ENST00000563808.1_1_15:89424564-89438702:-|nuORF;ENSG00000140511|ENST00000359595|HAPLN3	ENST00000563808.1_1_15:89424564-89438702:-|nuORF	ENST00000563808.1_1_15:89424564-89438702:-|nuORF	MSMS	HCT116MG_D190212_S4	4	536.2512817382812	2	536.326068	1070.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.078	1	35.692	35.192	36.192	-0.38558								0	0	0	0.96377	1	13189	13189		1.6526	0	1				37078	3668	23761	23884	35670	35670					0.10508961176606135
VPLLLLVPLL	10	Unmodified	_VPLLLLVPLL_					0	0	0		ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	MSMS	HCT116MG_D190212_S2	2	545.3828125	2	545.385929	1088.7573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.184	1	48.051	47.551	48.551	-0.13281								0	0	0	0.97116	1	18401	18401		0	0	1				37079	6674	23762	23885	35671	35671					0.2164757452117101
VPLLPMAV	8	Unmodified	_VPLLPMAV_					0	0	0			REV__ENST00000602076.5_1_19:49949641-49950083:-|nuORF	REV__ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	HCT116MG_D190212_S4	4	420.2562255859375	2	420.2566	838.498647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.363	1	50.004	49.504	50.504	-0.35878								0	0	0	0.8837	1	18709	18709		0.79363	0	1		+		37080	11226	23763	23886	35672	35672					0.07293720007442062
VPLLVLVPKV	10	Unmodified	_VPLLVLVPKV_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	MSMS	HCT116MG_D190212_S1	1	538.8770141601562	2	538.875728	1075.7369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.082	1	11.082	10.582	11.582	0								0	0	0	0.97116	1	3456	3456		0	0	1		+		37081	13656	23764	23887	35673	35673					0.20206403861357103
VPLPKIFIKRQ	11	Unmodified	_VPLPKIFIKRQ_					0	0	0		PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant;ENSG00000115020|ENST00000264380|PIKFYVE	PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	669.9367065429688	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.74	1	46.426	45.926	46.926	-0.31405								0	0	0	0.95925	1	17533	17533		1.4819	0.15237	1				37082	2440	23765	23888	35674	35674					0.19931356450001658
VPLPKIFIKRQ	11	Unmodified	_VPLPKIFIKRQ_					0	0	0		PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant;ENSG00000115020|ENST00000264380|PIKFYVE	PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	PIKFYVE|p.M1447Wfs*31|1|0.24|ENSG00000115020|chr2:208335870-208335870|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	669.9364624023438	2	669.93464	1337.85473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.99	1	47.621	47.121	48.121	-0.36907								0	0	0	0.95925	1	17758	17758		1.4819	0	1				37083	2440	23765	23888	35675	35675					0.19931356450001658
VPLRKVHL	8	Unmodified	_VPLRKVHL_					0	0	0		nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8;ENST00000546872.1_1_12:51888707-51890959:+|nuORF;ENST00000446228.5_1_2:162758621-162834241:+|nuORF;nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10	nc|ENSG00000050438|Q2Y0W8-4|SLC4A8	nc|ENSG00000050438|Q2Y0W8-4|SLC4A8	MSMS	HCT116MG_D190212_S3	3	480.9678955078125	2	481.318912	960.62327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.075	1	49.759	49.259	50.259	-0.31525								0	0	0	0.8837	1	18873	18873		5.7604	0	1				37084	1052	23766	23889	35676	35676					0.14138353538987758
VPLRQEARL	9	Unmodified	_VPLRQEARL_					0	0	0			REV__MEGF8|p.P499Rfs*19|1|0.53|ENSG00000105429|chr19:42337186-42337186|C/-|frameshift_variant	REV__MEGF8|p.P499Rfs*19|1|0.53|ENSG00000105429|chr19:42337186-42337186|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	361.2203674316406	3	361.220735	1080.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.762	1	17.762	17.262	18.262	0								0	0	0	0.76954	1	6065	6065		2.4985	0	1		+		37085	17017	23767	23890	35677	35677					0.10328229354126961
VPLVKKRFLF	10	Unmodified	_VPLVKKRFLF_					0	0	0			REV__ENST00000256255.10_2_8:29921269-29921377:-|nuORF	REV__ENST00000256255.10_2_8:29921269-29921377:-|nuORF	MSMS	HCT116MG_D190212_S1	1	624.2364501953125	2	623.905351	1245.79615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.846	1	10.846	10.346	11.346	0								0	0	0	0.97116	1	3361	3361		0	0	1		+		37086	14608	23768	23891	35678	35678					0.18308299875548073
VPLVPVGL	8	Unmodified	_VPLVPVGL_					0	0	0		ENST00000464740.1_1_22:51216264-51220722:-|nuORF	ENST00000464740.1_1_22:51216264-51220722:-|nuORF	ENST00000464740.1_1_22:51216264-51220722:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	793.5187377929688	1	793.518202	792.510926	0.96993	0.00076966	0.073674	5.8461E-05	1.0436	0.00082812	793.5179007699788	57.704	0.15524	57.529	57.418	57.574	-0.17494					4	2	2	0	0	0	0.59885	1	22301	22301		32.454	0	1	16209000			37087	8084	23769	23892	35679	35679					0.10637079742139122
VPLVTVWFMVI	11	Unmodified	_VPLVTVWFMVI_					0	0	0		CASD1|p.A543Sfs*33|1|0.32|ENSG00000127995|chr7:94545686-94545687|-/A|frameshift_variant;ENSG00000127995|ENST00000297273|CASD1	CASD1|p.A543Sfs*33|1|0.32|ENSG00000127995|chr7:94545686-94545687|-/A|frameshift_variant	CASD1|p.A543Sfs*33|1|0.32|ENSG00000127995|chr7:94545686-94545687|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	652.3758544921875	2	652.377778	1302.741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.478	1	37.094	36.594	37.594	-0.3839								0	0	0	0.94924	1	13755	13755		6.7232	0	1				37088	327	23770	23893	35680	35680					0.10174125292746794
VPNIERNFRQ	10	Unmodified	_VPNIERNFRQ_					0	0	0		ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant;ENSG00000170396|ENST00000302277|ZNF804A	ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant	ZNF804A|p.A1114Rfs*17|1|0.1|ENSG00000170396|chr2:184938703-184938704|-/TGCAGCAGCACGCTGCAGCTGC|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	424.896728515625	3	424.898432	1271.67347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.981	1	14.658	14.158	15.158	-0.32325								0	0	0	0.96769	1	4945	4945		0.77653	0	1				37089	5128	23771	23894	35681	35681					0.048498114061885644
VPPEPLPPPP	10	Unmodified	_VPPEPLPPPP_					0	0	0			REV__DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	REV__DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	520.2958984375	2	520.294768	1038.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.376	1	34.082	33.582	34.582	-0.29419								0	0	0	0.93854	1	12651	12651		7.2892	0	1		+		37090	10365	23772	23895	35682	35682					0.05723815108422059
VPPEPLPPPP	10	Unmodified	_VPPEPLPPPP_					0	0	0			REV__DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	REV__DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	520.2960815429688	2	520.294768	1038.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.444	1	31.073	30.573	31.573	-0.37026								0	0	0	0.93854	1	11412	11412		7.2892	0	1		+		37091	10365	23772	23895	35683	35683					0.05723815108422059
VPPKVTTT	8	Unmodified	_VPPKVTTT_					0	0	0		ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	MSMS	HCT116MG_D190212_S4	4	421.7518310546875	2	421.752736	841.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.433	1	40.055	39.555	40.555	-0.37828								0	0	0	0.8837	1	14834	14834		2.5775	0	1				37092	2374	23773	23896	35684	35684					0.06383284011508294
VPPLIIPT	8	Unmodified	_VPPLIIPT_					0	0	0		TDRD7|p.M458I|1|0.25|ENSG00000196116|chr9:97460696-97460696|G/T|missense_variant	TDRD7|p.M458I|1|0.25|ENSG00000196116|chr9:97460696-97460696|G/T|missense_variant	TDRD7|p.M458I|1|0.25|ENSG00000196116|chr9:97460696-97460696|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	849.5430908203125	1	849.544417	848.537141	0.89111	0.00075704	-0.73062	-0.0006207	0.16049	0.00013634	849.5446609833965	60.493	2.1135	60.227	59.001	61.114	-0.26582					55	42	2	0	0	0	0.88026	1	22732	22732		0	0	1	8539300			37093	18262	23774	23897	35685	35685					0.10681348913601596
VPPLLQILF	9	Unmodified	_VPPLLQILF_					0	0	0			REV__nc|ENSG00000173805|P54257-4|HAP1	REV__nc|ENSG00000173805|P54257-4|HAP1	MSMS	HCT116MG_D190212_S3	3	520.3328857421875	2	520.331153	1038.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.205	1	54.913	54.413	55.413	-0.2918								0	0	0	0.7696	1	20935	20935		2.3027	0	1		+		37094	17217	23775	23898	35686	35686					0.12997568901823797
VPPLVIKI	8	Unmodified	_VPPLVIKI_					0	0	0			REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant	REV__NSUN7|p.D705*|1|0.2|ENSG00000179299|chr4:40808893-40808894|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	439.8091735839844	2	439.807314	877.600075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.391	1	14.47	13.97	14.97	0.079683								0	0	0	0.8837	1	4628	4628		2.8892	2.0956	1		+		37095	13637	23776	23899	35687	35687					0.156379147016537
VPPLVWKLGW	10	Unmodified	_VPPLVWKLGW_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	HCT116MG_D190212_S4	4	597.856689453125	2	597.855327	1193.6961	0.96143	0.00057479	0.95075	0.00056841	1.9122	0.0011432	597.8557372443646	49.165	0.95999	48.8	48.525	49.485	-0.365					44	20	3	0	0	0	0.88752	1	18291	18291		1.6526	1.6526	1	11795000			37096	6141	23777	23900	35688	35688					0.1070006254171858
VPPQPQPSGP	10	Unmodified	_VPPQPQPSGP_					0	0	0			REV__MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant	REV__MICAL3|p.R1706Afs*24|1|0.3|ENSG00000243156|chr22:17817545-17817545|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	502.2867431640625	2	502.263999	1002.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.304	1	30.934	30.434	31.434	-0.37026								0	0	0	0.93576	1	11356	11356		7.9102	1.187	1		+		37097	17027	23778	23901	35689	35689					0.012288834091464196
VPQALRIYQLQ	11	Unmodified	_VPQALRIYQLQ_					0	0	0			REV__ENST00000424419.6_1_1:41157373-41232429:+|nuORF	REV__ENST00000424419.6_1_1:41157373-41232429:+|nuORF	MSMS	HCT116MG_D190212_S3	3	664.8906860351562	2	664.887887	1327.76122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.942	1	45.631	45.131	46.131	-0.31094								0	0	0	0.94538	1	17216	17216		8.7454	2.5396	1		+		37098	10712	23779	23902	35690	35690					0.11045012276917987
VPQGVTLFRQ	10	Unmodified	_VPQGVTLFRQ_					0	0	0		HCN1|p.R838G|1|0.19|ENSG00000164588|chr5:45262082-45262082|G/C|missense_variant	HCN1|p.R838G|1|0.19|ENSG00000164588|chr5:45262082-45262082|G/C|missense_variant	HCN1|p.R838G|1|0.19|ENSG00000164588|chr5:45262082-45262082|G/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	382.2071533203125	3	382.220624	1143.64004	-0.034443	-1.3165E-05	-0.18771	-7.1747E-05	-0.22215	-8.4912E-05	382.22053175340056	24.261	0.57529	24.261	23.941	24.516	0					19	10	3	0	0	0	0.31143	1	8665	8665		3.5871	1.0886	1	13264000			37099	9206	23780	23903	35691	35691					0.07396809634292367
VPQLEIVPN	9	Unmodified	_VPQLEIVPN_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	HCT116MG_D190212_S1	1	504.79022216796875	2	504.78985	1007.56515	0.4395	0.00022185	0.0068263	3.4458E-06	0.44632	0.0002253	504.7898639445598	46.933	0.31075	46.933	46.803	47.114	0					8	5	2	0	0	0	0.069315	1	17842	17842		65.235	25.285	1	18009000		+	37100	548	23781	23904	35692	35692					0.06166627103038991
VPQWRSQDP	9	Unmodified	_VPQWRSQDP_					0	0	0			REV__ENST00000549318.5_3_12:56705145-56708722:-|nuORF	REV__ENST00000549318.5_3_12:56705145-56708722:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	371.5207824707031	3	371.520962	1111.54106	-0.081718	-3.036E-05	0.067779	2.5181E-05	-0.013939	-5.1787E-06	371.5208809332684	32.117	0.62188	31.886	31.373	31.995	-0.23009					17	11	2	0	0	0	0.70732	1	11811	11811		2.7352	0.23671	1	12916000	+		37101	16409	23782	23905	35693	35693					-0.010252133306039468
VPRLLNRIYDK	11	Unmodified	_VPRLLNRIYDK_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MSMS	HCT116MG_D190212_S4	4	693.9163208007812	2	693.914436	1385.81432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.734	1	44.361	43.861	44.861	-0.37326								0	0	0	0.94755	1	16488	16488		7.609	4.8738	1				37102	6122	23783	23906	35694	35694					0.13684390059597717
VPRPASRS	8	Unmodified	_VPRPASRS_					0	0	0		nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2;NFATC2|p.K321Rfs*70|2|0.39|ENSG00000101096|chr20:51523281-51523281|G/-|frameshift_variant	nc|ENSG00000101096|Q13469-5|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-MSMS	HCT116MG_D190212_S1	1	435.2510681152344	2	435.251226	868.487899	-0.18811	-8.1876E-05	0.3476	0.00015129	0.15949	6.9416E-05	435.2512469030659	42.421	0.36357	42.421	42.123	42.486	0					10	6	2	0	0	0	0.8672	1	15987	15987		2.3027	0	1	9273100			37103	1751	23784	23907	35695	35695					0.04839453677379879
VPRPNLVR	8	Unmodified	_VPRPNLVR_					0	0	0		ENST00000354336.7_1_22:21305412-21305550:+|nuORF	ENST00000354336.7_1_22:21305412-21305550:+|nuORF	ENST00000354336.7_1_22:21305412-21305550:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	950.58935546875	1	950.58941	949.582134	0.73265	0.00069645	-0.0044445	-4.2249E-06	0.7282	0.00069222	950.5893252376861	60.792	0.77042	60.792	60.646	61.417	0					27	14	3	0	0	0	0.8672	1	23440	23440		2.3027	0	1	159910000			37104	7284	23785	23908	35696	35696					0.10532592499521343
VPRPPPPLA	9	Unmodified	_VPRPPPPLA_					0	0	0			REV__ENSG00000180720|ENST00000682254|CHRM4	REV__ENSG00000180720|ENST00000682254|CHRM4	MSMS	HCT116MG_D190212_S3	3	472.2901916503906	2	472.28982	942.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.39	1	31.12	30.62	31.62	-0.27028								0	0	0	0.76575	1	11466	11466		15.847	1.0089	1		+		37105	13667	23786	23909	35697	35697					0.09150671893689832
VPRRKGTL	8	Unmodified	_VPRRKGTL_					0	0	0		nc|ENSG00000204815|Q96NG3-2|ODAD4	nc|ENSG00000204815|Q96NG3-2|ODAD4	nc|ENSG00000204815|Q96NG3-2|ODAD4	MULTI-SECPEP	HCT116MG_D190212_S1	1	926.5167846679688	1	926.58941	925.582134	0.82028	0.00076006	0.036053	3.3406E-05	0.85633	0.00079347	926.5889061939594	58.539	0.30407	58.539	58.362	58.666	0					7	5	2	0	0	0	0.33574	1	22491	22491		0	0	1	13649000			37106	9610	23787	23910	35698	35698					0.11636592499519338
VPRRKRRNR	9	Unmodified	_VPRRKRRNR_					0	0	0		ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	MSMS	HCT116MG_D190212_S3	3	413.2662658691406	3	413.265672	1236.77519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3962	1	8.4168	7.9168	8.9168	0.020599								0	0	0	0.77018	1	2539	2539		0.26902	0.1097	1				37107	4986	23788	23911	35699	35699					0.1662714733924986
VPRRRPRVW	9	Unmodified	_VPRRRPRVW_					0	0	0		ENST00000268893.10_1_17:56387876-56387978:-|nuORF	ENST00000268893.10_1_17:56387876-56387978:-|nuORF	ENST00000268893.10_1_17:56387876-56387978:-|nuORF	MSMS	HCT116MG_D190212_S3	3	407.9202880859375	3	407.919502	1220.73668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.095	1	12.15	11.65	12.65	0.055045								0	0	0	0.77008	1	3748	3748		0.26902	0	1				37108	6913	23789	23912	35700	35700					0.13513841704730112
VPRRRPRVW	9	Unmodified	_VPRRRPRVW_					0	0	0		ENST00000268893.10_1_17:56387876-56387978:-|nuORF	ENST00000268893.10_1_17:56387876-56387978:-|nuORF	ENST00000268893.10_1_17:56387876-56387978:-|nuORF	MSMS	HCT116MG_D190212_S3	3	407.9202880859375	3	407.919502	1220.73668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.907	1	12.976	12.476	13.476	0.069158								0	0	0	0.77008	1	4060	4060		0.26902	0	1				37109	6913	23789	23912	35701	35701					0.13513841704730112
VPRRRWRQRKL	11	Unmodified	_VPRRRWRQRKL_					0	0	0			REV__FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant	REV__FRMPD4|p.K1053Dfs*26|1|0.08|ENSG00000169933|chrX:12717982-12717983|-/GACTT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	775.9866333007812	2	775.984384	1549.95422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.227	1	51.882	51.382	52.382	-0.34538								0	0	0	0.96208	1	19463	19463		0	0	1		+		37110	16840	23790	23913	35702	35702					0.2012361190734282
VPRRVRKF	8	Unmodified	_VPRRVRKF_					0	0	0		ENST00000591991.1_1_19:5667238-5667808:+|nuORF;ENST00000592555.1_1_19:5666960-5667808:+|nuORF	ENST00000591991.1_1_19:5667238-5667808:+|nuORF	ENST00000591991.1_1_19:5667238-5667808:+|nuORF	MSMS	HCT116MG_D190212_S2	2	353.2283935546875	3	353.229565	1056.66687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.629	1	62.5	62	63	-0.12924								0	0	0	0.8837	1	24278	24278		0.40072	0.19386	1				37111	9038	23791	23914	35703	35703					0.14079963036124354
VPSATTPPVP	10	Unmodified	_VPSATTPPVP_					0	0	0			REV__ENSG00000159208|ENST00000290363|CIART	REV__ENSG00000159208|ENST00000290363|CIART	MSMS	HCT116MG_D190212_S4	4	483.23760986328125	2	483.26875	964.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.521	1	33.138	32.638	33.638	-0.38374								0	0	0	0.77279	1	12206	12206		32.305	1.0371	1		+		37112	12799	23792	23915	35704	35704					0.03926651694666816
VPSGLPAVPA	10	Unmodified	_VPSGLPAVPA_					0	0	0		ENSG00000176723|ENST00000315678|ZNF843	ENSG00000176723|ENST00000315678|ZNF843	ENSG00000176723|ENST00000315678|ZNF843	MSMS	HCT116MG_D190212_S4	4	454.2655944824219	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.056	1	29.699	29.199	30.199	-0.3571								0	0	0	0.85468	1	10880	10880		21.747	2.4897	1				37113	5431	23793	23916	35705	35705					0.06046972902845482
VPSSHSVPSA	10	Unmodified	_VPSSHSVPSA_					0	0	0		ENST00000480273.5_1_20:62318929-62319157:+|nuORF	ENST00000480273.5_1_20:62318929-62319157:+|nuORF	ENST00000480273.5_1_20:62318929-62319157:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	484.245849609375	2	484.245806	966.47706	0.16943	8.2048E-05	0.094796	4.5905E-05	0.26423	0.00012795	484.2457601294011	26.938	0.93784	26.585	26.45	27.388	-0.35254					27	17	4	0	0	0	0.047709	1	9785	9785		88.904	2.5717	1	94873000			37114	8238	23794	23917	35706	35706					-0.007519934875631407
VPSSLRCRGTN	11	Unmodified	_VPSSLRCRGTN_					0	0	0			REV__ENST00000593017.1_1_19:12917487-12917751:+|nuORF	REV__ENST00000593017.1_1_19:12917487-12917751:+|nuORF	MSMS	HCT116MG_D190212_S4	4	595.3089599609375	2	595.308946	1188.60334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.135	1	31.76	31.26	32.26	-0.37529								0	0	0	0.94416	1	11692	11692		9.3831	0	1		+		37115	11228	23795	23918	35707	35707					0.01658189746081007
VPSVESSLF	9	Unmodified	_VPSVESSLF_					0	0	0		KIAA1549|p.G773Afs*8|1|0.2|ENSG00000122778|chr7:138917310-138917310|G/-|frameshift_variant;KIAA1549|p.P943Afs*6|1|0.07|ENSG00000122778|chr7:138916800-138916801|-/T|frameshift_variant;KIAA1549|p.E1477Gfs*3|1|0.36|ENSG00000122778|chr7:138871280-138871281|-/G|frameshift_variant;KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	KIAA1549|p.G773Afs*8|1|0.2|ENSG00000122778|chr7:138917310-138917310|G/-|frameshift_variant	KIAA1549|p.G773Afs*8|1|0.2|ENSG00000122778|chr7:138917310-138917310|G/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	483.3031921386719	2	482.752933	963.491313	0.23266	0.00011232	0.16897	8.1572E-05	0.40163	0.00019389	482.75281908449904	55.731	0.31128	55.546	55.276	55.587	-0.18565					8	5	3	0	0	0	0.23301	1	21414	21414		21.747	0	1	19104000			37116	2781	23796	23919	35708	35708					0.008106589407361753
VPSVESSLF	9	Unmodified	_VPSVESSLF_					0	0	0		KIAA1549|p.G773Afs*8|1|0.2|ENSG00000122778|chr7:138917310-138917310|G/-|frameshift_variant;KIAA1549|p.P943Afs*6|1|0.07|ENSG00000122778|chr7:138916800-138916801|-/T|frameshift_variant;KIAA1549|p.E1477Gfs*3|1|0.36|ENSG00000122778|chr7:138871280-138871281|-/G|frameshift_variant;KIAA1549|p.P1759Rfs*66|3|0.22|ENSG00000122778|chr7:138852241-138852241|G/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	KIAA1549|p.G773Afs*8|1|0.2|ENSG00000122778|chr7:138917310-138917310|G/-|frameshift_variant	KIAA1549|p.G773Afs*8|1|0.2|ENSG00000122778|chr7:138917310-138917310|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	482.752933	963.491313	0.26763	0.0001292	-0.047782	-2.3067E-05	0.21984	0.00010613	482.7526535489084	55.832	0.21163	55.544	55.411	55.623	-0.28773	-0.00067202	-0.00015461	NaN	21.747	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3958500			37117	2781	23796	23919							0.008106589407361753
VPSVVPVP	8	Unmodified	_VPSVVPVP_					0	0	0		ENSG00000171295|ENST00000304060|ZNF440	ENSG00000171295|ENST00000304060|ZNF440	ENSG00000171295|ENST00000304060|ZNF440	MSMS	HCT116MG_D190212_S3	3	397.7053527832031	2	397.244547	792.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.858	1	32.572	32.072	33.072	-0.28511								0	0	0	0.8837	1	12058	12058		10.183	0.83596	1				37118	5186	23797	23920	35709	35709					0.07000202845426884
VPTRRLLLPR	10	Unmodified	_VPTRRLLLPR_					0	0	0		ZXDA|p.G678Wfs*16|1|0.83|ENSG00000198205|chrX:57908389-57908390|-/A|frameshift_variant;ZXDA|p.F774Sfs*19|1|0.34|ENSG00000198205|chrX:57908100-57908100|A/-|frameshift_variant;ENSG00000198205|ENST00000358697|ZXDA	ZXDA|p.G678Wfs*16|1|0.83|ENSG00000198205|chrX:57908389-57908390|-/A|frameshift_variant	ZXDA|p.G678Wfs*16|1|0.83|ENSG00000198205|chrX:57908389-57908390|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	610.901123046875	2	610.901131	1219.78771	0.39073	0.0002387	-0.87389	-0.00053386	-0.48316	-0.00029516	610.9005207159964	58.387	0.3542	58.387	58.261	58.615	0					10	6	2	0	0	0	0.88076	1	22527	22527		3.2813	0	1	40108000			37119	6214	23798	23921	35710	35710					0.18660745958936786
VPTVMSQRR	9	Unmodified	_VPTVMSQRR_					0	0	0		ENST00000583447.5_1_17:37219733-37228839:+|nuORF	ENST00000583447.5_1_17:37219733-37228839:+|nuORF	ENST00000583447.5_1_17:37219733-37228839:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	536.7978515625	2	537.29785	1072.58115	0.31724	0.00017045	2.6913	0.001446	3.0086	0.0016165	537.2995178768726	49.354	0.25306	49.2	49.036	49.289	-0.15405					10	4	3	0	0	0	0.25004	1	18892	18892		15.847	9.124	1	100860000			37120	8971	23799	23922	35711	35711					0.04776010068303549
VPTVRART	8	Unmodified	_VPTVRART_					0	0	0			REV__ENST00000479209.1_1_3:150264653-150320920:-|nuORF	REV__ENST00000479209.1_1_3:150264653-150320920:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	451.8506164550781	2	450.274701	898.534849	0.25141	0.0001132	-0.00074294	-3.3453E-07	0.25067	0.00011287	450.27460067603795	50.75	1.608	50.395	50.005	51.613	-0.35483					87	30	4	0	0	0	0.85789	1	18967	18967		3.9444	0	1	286610000	+		37121	15938	23800	23923	35712	35712					0.08152313228504227
VPVGFFIM	8	Unmodified	_VPVGFFIM_					0	0	0			REV__tr|U7T1S7|U7T1S7_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00560PE=4SV=1	REV__tr|U7T1S7|U7T1S7_FUSNUTRAPC4-dicarboxylatetransportsystempermeaseDctMsubunitdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00560PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	455.2484130859375	2	455.248775	908.482997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.545	1	42.475	41.975	42.975	-0.069984								0	0	0	0.8837	1	16106	16106		2.8892	0	1		+		37122	17904	23801	23924	35713	35713					0.025094334903883464
VPVGPHLS	8	Unmodified	_VPVGPHLS_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MSMS	HCT116MG_D190212_S3	3	403.29833984375	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.353	1	12.415	11.915	12.915	0.06246								0	0	0	0.8837	1	3846	3846		0.79363	0	1				37123	5068	23802	23925	35714	35714					0.03934148042867491
VPVISLKA	8	Unmodified	_VPVISLKA_					0	0	0			REV__ENST00000527871.5_1_16:2012676-2013018:-|nuORF	REV__ENST00000527871.5_1_16:2012676-2013018:-|nuORF	MSMS	HCT116MG_D190212_S1	1	413.7716979980469	2	413.773471	825.53239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.807	1	55.807	55.307	56.307	0								0	0	0	0.8837	1	21439	21439		6.3541	0	1		+		37124	12319	23803	23926	35715	35715					0.112644647708521
VPVPKPLC	8	Unmodified	_VPVPKPLC_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1;TOPAZ1|p.N1080Mfs*9|1|0.27|ENSG00000173769|chr3:44269288-44269288|A/-|frameshift_variant	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MSMS	HCT116MG_D190212_S4	4	426.75341796875	2	426.754224	851.493896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.921	1	40.544	40.044	41.044	-0.37732								0	0	0	0.8837	1	15031	15031		6.3541	0	1				37125	5302	23804	23927	35716	35716					0.0622083586467852
VPVVVVFL	8	Unmodified	_VPVVVVFL_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MSMS	HCT116MG_D190212_S1	1	436.2922668457031	2	436.286214	870.557876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.18	1	56.18	55.68	56.68	0								0	0	0	0.8837	1	21592	21592		2.8892	0	1				37126	4819	23805	23928	35717	35717					0.11741939293278847
VPWIRERRWQI	11	Unmodified	_VPWIRERRWQI_					0	0	0			REV__WNK2|p.A549V|1|0.38|ENSG00000165238|chr9:93247646-93247646|C/T|missense_variant	REV__WNK2|p.A549V|1|0.38|ENSG00000165238|chr9:93247646-93247646|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	769.9415283203125	2	769.938776	1537.863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.127	1	43.127	42.627	43.627	0								0	0	0	0.95581	1	16285	16285		3.2813	0.54611	1		+		37127	18055	23806	23929	35718	35718					0.11558303419360527
VPWRYRQRK	9	Unmodified	_VPWRYRQRK_					0	0	0		ENST00000563686.5_1_18:52942938-53070719:-|nuORF	ENST00000563686.5_1_18:52942938-53070719:-|nuORF	ENST00000563686.5_1_18:52942938-53070719:-|nuORF	MSMS	HCT116MG_D190212_S3	3	644.9833984375	2	644.872905	1287.73126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.825	1	11.88	11.38	12.38	0.055045								0	0	0	0.77008	1	3647	3647		0.6015	0.14316	1				37128	8837	23807	23930	35719	35719					0.09890118122257263
VPYKRKYL	8	Unmodified	_VPYKRKYL_					0	0	0		nc|ENSG00000241399|Q8IX05-2|CD302	nc|ENSG00000241399|Q8IX05-2|CD302	nc|ENSG00000241399|Q8IX05-2|CD302	MSMS	HCT116MG_D190212_S3	3	356.21783447265625	3	356.218443	1065.6335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.175	1	52.872	52.372	53.372	-0.30305								0	0	0	0.8837	1	20119	20119		1.8442	0.6509	1				37129	9653	23808	23931	35720	35720					0.10330916473549223
VPYKRKYL	8	Unmodified	_VPYKRKYL_					0	0	0		nc|ENSG00000241399|Q8IX05-2|CD302	nc|ENSG00000241399|Q8IX05-2|CD302	nc|ENSG00000241399|Q8IX05-2|CD302	MSMS	HCT116MG_D190212_S4	4	356.2178955078125	3	356.218443	1065.6335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.207	1	52.872	52.372	53.372	-0.33473								0	0	0	0.8837	1	19858	19858		1.8442	0.6509	1				37130	9653	23808	23931	35721	35721					0.10330916473549223
VPYTPFKMV	9	Unmodified	_VPYTPFKMV_					0	0	0			REV__nc|ENSG00000165209|Q96SI9-2|STRBP	REV__nc|ENSG00000165209|Q96SI9-2|STRBP	MULTI-MSMS	HCT116MG_D190212_S2	2	361.1773376464844	3	361.196539	1080.56779	-0.29741	-0.00010742	0.048527	1.7528E-05	-0.24889	-8.9897E-05	361.19646109926924	15.684	0.26113	15.35	15.219	15.48	-0.33451					6	4	2	0	0	0	0.74607	1	5276	5276		1.0715	0.29493	1	4322700	+		37131	13042	23809	23932	35722	35722					0.030727592363518852
VQAVLDVKPL	10	Unmodified	_VQAVLDVKPL_					0	0	0			REV__ENSG00000160299|ENST00000359568|PCNT	REV__ENSG00000160299|ENST00000359568|PCNT	MSMS	HCT116MG_D190212_S2	2	541.5904541015625	2	541.334424	1080.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.232	1	48.093	47.593	48.593	-0.13929								0	0	0	0.94339	1	18421	18421		6.2058	1.4498	1		+		37132	12828	23810	23933	35723	35723					0.11719462062569619
VQDALISLL	9	Unmodified	_VQDALISLL_					0	0	0		tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	tr|U7SLX9|U7SLX9_FUSNUATPasedynein-relatedAAAdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01982PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S1	1	971.5777587890625	1	971.577174	970.569897	0.7037	0.0006837	-0.0081244	-7.8935E-06	0.69557	0.0006758	971.5768932078496	55.734	0.25724	55.734	55.554	55.811	0					8	4	3	0	0	0	0.030723	1	21412	21412		85.642	6.0452	1	190220000			37133	18343	23811	23934	35724	35724					0.08343511245811897
VQDAPSGHYS	10	Unmodified	_VQDAPSGHYS_					0	0	0			REV__ENST00000351948.8_1_2:17927215-17935030:-|nuORF	REV__ENST00000351948.8_1_2:17927215-17935030:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	531.2739868164062	2	530.738345	1059.46214	0.41844	0.00022208	-0.25675	-0.00013627	0.16169	8.5814E-05	530.7382453689881	22.588	0.52103	22.569	22.126	22.647	-0.018869					11	9	2	0	0	0	0.80632	1	7883	7883		11.495	0.67078	1	2718400	+		37134	15023	23812	23935	35725	35725					-0.06521485355574441
VQEREAAKA	9	Unmodified	_VQEREAAKA_					0	0	0		NOL8|p.A96V|1|0.2|ENSG00000198000|chr9:92319351-92319351|G/A|missense_variant	NOL8|p.A96V|1|0.2|ENSG00000198000|chr9:92319351-92319351|G/A|missense_variant	NOL8|p.A96V|1|0.2|ENSG00000198000|chr9:92319351-92319351|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	501.2483215332031	2	501.272355	1000.53016	0.42592	0.0002135	-2.626	-0.0013164	-2.2001	-0.0011029	501.2711512731263	27.931	0.3084	27.589	27.398	27.706	-0.34201					8	5	2	0	0	0	0.31596	1	10117	10117		29.082	5.061	1	29764000			37135	9699	23813	23936	35726	35726					0.029913842950804792
VQETYEAKRHE	11	Unmodified	_VQETYEAKRHE_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-SECPEP	HCT116MG_D190212_S4	4	695.1643676757812	2	695.341498	1388.66844	0.60295	0.00041926	-0.20919	-0.00014546	0.39377	0.0002738	695.3412420305277	22.797	0.73017	22.559	22.185	22.916	-0.23758					28	13	3	0	0	0	0.36512	1	8025	8025		2.7352	0	1	3327800			37136	5893	23814	23937	35727	35727					-0.010345372471192604
VQEVSEIL	8	Unmodified	_VQEVSEIL_					0	0	0		ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A;DENND5A|p.K895Sfs*7|2|0.23|ENSG00000184014|chr11:9150132-9150132|T/-|frameshift_variant;DENND5A|p.L896Vfs*14|1|0.2|ENSG00000184014|chr11:9150131-9150132|-/T|frameshift_variant	ENSG00000184014|ENST00000328194|DENND5A	ENSG00000184014|ENST00000328194|DENND5A	MULTI-SECPEP	HCT116MG_D190212_S3	3	916.4629516601562	1	916.498589	915.491313	0.87122	0.00079847	0.67923	0.00062251	1.5504	0.001421	916.499248761101	56.528	0.15728	56.244	56.15	56.307	-0.28367					4	2	2	0	0	0	0.14252	1	21462	21462		68.081	3.8444	1	847800			37137	5754	23815	23938	35728	35728					0.030186589407207975
VQFRRKFTLT	10	Unmodified	_VQFRRKFTLT_					0	0	0			REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	REV__nc|ENSG00000109794|A5PLN7-4|FAM149A	MSMS	HCT116MG_D190212_S1	1	648.3803100585938	2	648.382771	1294.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.325	1	48.325	47.825	48.825	0								0	0	0	0.94339	1	18385	18385		6.2058	3.4706	1		+		37138	11381	23816	23939	35729	35729					0.11540449342351167
VQFRYWRFKKS	11	Unmodified	_VQFRYWRFKKS_					0	0	0			REV__PTPRQ|p.L1504S|1|0.08|ENSG00000139304|chr12:80588354-80588354|T/C|missense_variant	REV__PTPRQ|p.L1504S|1|0.08|ENSG00000139304|chr12:80588354-80588354|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	515.2918090820312	3	515.62101	1543.8412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.927	1	49.612	49.112	50.112	-0.31525								0	0	0	0.96121	1	18814	18814		0.45452	0	1		+		37139	17454	23817	23940	35730	35730					0.09103498670742738
VQGASIRR	8	Unmodified	_VQGASIRR_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;nc|ENSG00000151914|Q03001-11|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	443.7650451660156	2	443.764501	885.514448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.071	1	42.766	42.266	43.266	-0.30472								0	0	0	0.8837	1	16064	16064		2.3027	0	1				37140	735	23818	23941	35731	35731					0.06711142568713058
VQGPQGEPGA	10	Unmodified	_VQGPQGEPGA_					0	0	0		nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000084636|Q07092-2|COL16A1	MSMS	HCT116MG_D190212_S4	4	470.22979736328125	2	470.230156	938.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.512	1	19.324	18.824	19.824	-0.18869								0	0	0	0.65378	1	6622	6622		39.957	7.1716	1				37141	1447	23819	23942	35732	35732					-0.025925665216618654
VQGRRRVSPL	10	Unmodified	_VQGRRRVSPL_					0	0	0			REV__ENST00000558190.5_1_14:92505726-92506164:-|nuORF	REV__ENST00000558190.5_1_14:92505726-92506164:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	584.2769165039062	2	584.357088	1166.69962	0.52485	0.0003067	-0.91553	-0.000535	-0.39068	-0.0002283	584.3564547267497	55.436	0.92044	55.25	54.459	55.38	-0.18565					21	17	2	0	0	0	0.81435	1	21404	21404		10.824	10.824	1	13044000	+		37142	16472	23820	23943	35733	35733					0.122941253683166
VQGRRRVSPL	10	Unmodified	_VQGRRRVSPL_					0	0	0			REV__ENST00000558190.5_1_14:92505726-92506164:-|nuORF	REV__ENST00000558190.5_1_14:92505726-92506164:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	584.357088	1166.69962	0.47709	0.00027879	-0.96951	-0.00056654	-0.49242	-0.00028775	584.3564272362253	55.499	0.72924	55.187	54.829	55.558	-0.312	-0.031315	-1.1211E-05	NaN	10.824	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5241800	+		37143	16472	23820	23943							0.122941253683166
VQGVTKNG	8	Unmodified	_VQGVTKNG_					0	0	0			REV__nc|ENSG00000117625|Q9P2K3-4|RCOR3	REV__nc|ENSG00000117625|Q9P2K3-4|RCOR3	MSMS	HCT116MG_D190212_S3	3	401.7237243652344	2	401.72451	801.434466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.723	1	45.412	44.912	45.912	-0.31094								0	0	0	0.8837	1	17127	17127		4.756	0	1		+		37144	11621	23821	23944	35734	35734					0.025806561748481727
VQGYKKEYIP	10	Unmodified	_VQGYKKEYIP_					0	0	0			REV__ENSG00000164326|ENST00000296777|CARTPT	REV__ENSG00000164326|ENST00000296777|CARTPT	MULTI-MSMS	HCT116MG_D190212_S1	1	408.8921203613281	3	408.892284	1223.65502	-0.2448	-0.00010009	0.25067	0.0001025	0.0058791	2.4039E-06	408.8923916100993	39.761	0.2597	39.761	39.605	39.865	0					7	4	2	0	0	0	0.84626	1	14966	14966		7.4771	5.2243	1	7149500	+		37145	12999	23822	23945	35735	35735					0.052142567116106875
VQHEKIHTG	9	Unmodified	_VQHEKIHTG_					0	0	0		ZNF283|p.R535K|1|0.26|ENSG00000167637|chr19:43848205-43848205|G/A|missense_variant	ZNF283|p.R535K|1|0.26|ENSG00000167637|chr19:43848205-43848205|G/A|missense_variant	ZNF283|p.R535K|1|0.26|ENSG00000167637|chr19:43848205-43848205|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	524.78076171875	2	524.780348	1047.54614	0.27334	0.00014344	-0.10496	-5.5082E-05	0.16838	8.8363E-05	524.7802802181924	19.659	0.62592	19.659	19.235	19.861	0					19	11	2	0	0	0	0.24895	1	6772	6772		36.127	2.0246	1	3610900			37146	18724	23823	23946	35736	35736					0.024270905319781377
VQIGDIVTV	9	Unmodified	_VQIGDIVTV_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	HCT116MG_D190212_S1	1	943.5469970703125	1	943.545874	942.538597	0.99066	0.00093473	-0.013636	-1.2866E-05	0.97702	0.00092186	943.5455380436414	53.127	0.30747	53.127	52.948	53.255	0					8	5	2	0	0	0	0.011082	1	20345	20345		110.67	10.876	1	32964000			37147	3761	23824	23947	35737	35737					0.0650293821172454
VQIGDIVTV	9	Unmodified	_VQIGDIVTV_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	HCT116MG_D190212_S2	2	943.5460205078125	1	943.545874	942.538597	0.51688	0.0004877	0.7585	0.00071568	1.2754	0.0012034	943.5457736163027	53.339	0.30778	53.15	53.018	53.326	-0.18922					14	5	3	0	0	0	0.011082	1	20531	20531		110.67	10.876	1	81667000			37148	3761	23824	23947	35738	35738					0.0650293821172454
VQIGKTTG	8	Unmodified	_VQIGKTTG_					0	0	0		FOCAD|p.S483Ffs*25|1|0.04|ENSG00000188352|chr9:20789598-20789599|-/C|frameshift_variant	FOCAD|p.S483Ffs*25|1|0.04|ENSG00000188352|chr9:20789598-20789599|-/C|frameshift_variant	FOCAD|p.S483Ffs*25|1|0.04|ENSG00000188352|chr9:20789598-20789599|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	402.2333068847656	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.869	1	27.68	27.18	28.18	-0.18847								0	0	0	0.8837	1	10062	10062		5.2307	0	1				37149	9162	23825	23948	35739	35739					0.045738268346440236
VQIKTMTPM	9	Unmodified	_VQIKTMTPM_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-SECPEP	HCT116MG_D190212_S2	2	525.2489624023438	2	524.780113	1047.54567	0.32442	0.00017025	0.29633	0.00015551	0.62075	0.00032576	524.7801604067322	20.156	0.88416	19.781	19.143	20.027	-0.37503					34	16	3	0	0	0	0.14956	1	6978	6978		48.346	8.3885	1	24580000	+		37150	11928	23826	23949	35740	35740					0.023802114962563792
VQIPGGRL	8	Unmodified	_VQIPGGRL_					0	0	0		ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	MSMS	HCT116MG_D190212_S1	1	420.25958251953125	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.7	1	58.7	58.2	59.2	0								0	0	0	0.8837	1	22619	22619		2.5775	0	1				37151	8210	23827	23950	35741	35741					0.0767752582552248
VQIPGGRL	8	Unmodified	_VQIPGGRL_					0	0	0		ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	MSMS	HCT116MG_D190212_S2	2	420.2592468261719	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.116	1	57.946	57.446	58.446	-0.1703								0	0	0	0.8837	1	22452	22452		2.5775	0	1				37152	8210	23827	23950	35742	35742					0.0767752582552248
VQKKIKISLKK	11	Unmodified	_VQKKIKISLKK_					0	0	0		tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	tr|U7SMQ7|U7SMQ7_FUSNUATPsynthaseepsilonchainOS=FusobacteriumnucleatumCTI-5OX=1316586GN=atpCPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	438.30657958984375	3	438.30614	1311.89659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.987	1	59.716	59.216	60.216	-0.27156								0	0	0	0.96208	1	22589	22589		0	0	1				37153	18352	23828	23951	35743	35743					0.2531191213852253
VQKKKKILK	9	Unmodified	_VQKKKKILK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	HCT116MG_D190212_S2	2	556.8952026367188	2	556.897526	1111.7805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.644	1	39.566	39.066	40.066	-0.077835								0	0	0	0.76967	1	14927	14927		2.0598	0	1				37154	3147	23829	23952	35744	35744					0.22908013358483004
VQKKTSQNVE	10	Unmodified	_VQKKTSQNVE_					0	0	0			REV__ENST00000493965.5_1_9:39078319-39086841:-|nuORF	REV__ENST00000493965.5_1_9:39078319-39086841:-|nuORF	MSMS	HCT116MG_D190212_S3	3	580.8162231445312	2	580.817127	1159.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.813	1	50.499	49.999	50.999	-0.31381								0	0	0	0.94339	1	19171	19171		6.2058	0.9089	1		+		37155	11308	23830	23953	35745	35745					0.04627594183830297
VQKLDKVIIL	10	Unmodified	_VQKLDKVIIL_					0	0	0		tr|U7SVE8|U7SVE8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01232PE=4SV=1	tr|U7SVE8|U7SVE8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01232PE=4SV=1	tr|U7SVE8|U7SVE8_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01232PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	584.8869018554688	2	584.886824	1167.7591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.652	1	61.397	60.897	61.897	-0.25457								0	0	0	0.96453	1	23264	23264		1.4819	0	1				37156	18492	23831	23954	35746	35746					0.18192583539143925
VQKTRGRAPAR	11	Unmodified	_VQKTRGRAPAR_					0	0	0			REV__ENST00000549913.6_1_12:113306162-113306792:+|nuORF	REV__ENST00000549913.6_1_12:113306162-113306792:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	619.8690185546875	2	620.373269	1238.73199	0.15171	9.412E-05	-2.3066	-0.001431	-2.1549	-0.0013368	620.3711020873187	49.76	0.8158	49.596	49.228	50.044	-0.16369					20	15	2	0	0	0	0.36447	1	18945	18945		4.5289	0	1	38305000	+		37157	16421	23832	23955	35747	35747					0.12216912771305033
VQKWREYRRQC	11	Unmodified	_VQKWREYRRQC_					0	0	0		ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	MSMS	HCT116MG_D190212_S4	4	776.4022216796875	2	776.401701	1550.78885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.864	1	31.489	30.989	31.989	-0.37529								0	0	0	0.95954	1	11582	11582		1.3295	0.13619	1				37158	2331	23833	23956	35748	35748					0.03548592265519801
VQKWVKQRRR	10	Unmodified	_VQKWVKQRRR_					0	0	0			REV__ENST00000331203.6_1_2:112896141-112922743:+|nuORF	REV__ENST00000331203.6_1_2:112896141-112922743:+|nuORF	MSMS	HCT116MG_D190212_S1	1	692.4249877929688	2	692.425836	1382.83712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.35	1	37.35	36.85	37.85	0								0	0	0	0.95507	1	13952	13952		3.5965	0	1		+		37159	14930	23834	23957	35749	35749					0.1610145396768985
VQLHPSDRP	9	Unmodified	_VQLHPSDRP_					0	0	0		ENSG00000132326|ENST00000254657|PER2;PER2|p.E569Rfs*35|1|0.05|ENSG00000132326|chr2:238258568-238258568|G/-|frameshift_variant;PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	ENSG00000132326|ENST00000254657|PER2;PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7802124023438	2	524.780348	1047.54614	0.1046	5.4894E-05	-0.089165	-4.6792E-05	0.015438	8.1018E-06	524.7803108431578	17.738	0.41652	17.82	17.585	18.002	0.081358					13	7	2	0	0	0	0.14972	1	5964	5964		48.346	8.3885	1	7273000			37160	3178;9743	23835	23958	35750	35750					0.024270905319781377
VQLHPSDRP	9	Unmodified	_VQLHPSDRP_					0	0	0		ENSG00000132326|ENST00000254657|PER2;PER2|p.E569Rfs*35|1|0.05|ENSG00000132326|chr2:238258568-238258568|G/-|frameshift_variant;PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	ENSG00000132326|ENST00000254657|PER2;PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7805786132812	2	524.780348	1047.54614	0.34023	0.00017855	0.10647	5.5875E-05	0.4467	0.00023442	524.7803125117986	19.567	1.1974	19.627	18.918	20.115	0.059828					54	22	4	0	0	0	0.11731	2	6736	6496;6736		54.774	3.4511	1	37701000			37161	3178;9743	23835	23958	35751;35752	35752					0.024270905319781377
VQLHPSDRP	9	Unmodified	_VQLHPSDRP_					0	0	0		ENSG00000132326|ENST00000254657|PER2;PER2|p.E569Rfs*35|1|0.05|ENSG00000132326|chr2:238258568-238258568|G/-|frameshift_variant;PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	ENSG00000132326|ENST00000254657|PER2;PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7803344726562	2	524.780348	1047.54614	0.2072	0.00010873	-0.0037902	-1.989E-06	0.20341	0.00010674	524.7803010999548	17.997	0.4666	17.822	17.636	18.102	-0.17501					17	8	3	0	0	0	0.21251	1	5994	5994		39.957	0	1	5040100			37162	3178;9743	23835	23958	35753	35753					0.024270905319781377
VQLHPSDRP	9	Unmodified	_VQLHPSDRP_					0	0	0		ENSG00000132326|ENST00000254657|PER2;PER2|p.E569Rfs*35|1|0.05|ENSG00000132326|chr2:238258568-238258568|G/-|frameshift_variant;PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	ENSG00000132326|ENST00000254657|PER2;PER2|p.P894Hfs*125|1|0.41|ENSG00000132326|chr2:238253342-238253342|G/-|frameshift_variant	ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7805786132812	2	524.780348	1047.54614	0.37542	0.00019701	0.084706	4.4452E-05	0.46013	0.00024146	524.7803138330878	19.846	1.082	19.652	18.914	19.996	-0.19368					58	20	4	0	0	0	0.11731	1	6605	6605		54.774	12.679	1	28992000			37163	3178;9743	23835	23958	35754	35754					0.024270905319781377
VQLKAERTKAR	11	Unmodified	_VQLKAERTKAR_					0	0	0			REV__tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	REV__tr|U7SJ60|U7SJ60_FUSNUGTPaseHflXOS=FusobacteriumnucleatumCTI-5OX=1316586GN=hflXPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	650.3964233398438	2	650.39641	1298.77827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.093	1	48.728	48.228	49.228	-0.365								0	0	0	0.95686	1	18198	18198		2.7352	0	1		+		37164	17687	23836	23959	35755	35755					0.14082932882729438
VQLKYYCYGWS	11	Unmodified	_VQLKYYCYGWS_					0	0	0			REV__nc|ENSG00000111319|P37088-4|SCNN1A	REV__nc|ENSG00000111319|P37088-4|SCNN1A	MSMS	HCT116MG_D190212_S1	1	705.3309936523438	2	705.331556	1408.64856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.678	1	62.678	62.178	63.178	0								0	0	0	0.95954	1	24207	24207		1.3295	0	1		+		37165	11425	23837	23960	35756	35756					-0.03942004511441155
VQLLLILLL	9	Unmodified	_VQLLLILLL_					0	0	0			REV__ENST00000552128.2_1_12:71519116-71532942:-|nuORF	REV__ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MSMS	HCT116MG_D190212_S2	2	519.4146118164062	2	519.370278	1036.726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.654	1	48.51	48.01	49.01	-0.1437								0	0	0	0.76967	1	18596	18596		2.0598	0	1		+		37166	11852	23838	23961	35757	35757					0.20911001487093017
VQLLLILLL	9	Unmodified	_VQLLLILLL_					0	0	0			REV__ENST00000552128.2_1_12:71519116-71532942:-|nuORF	REV__ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MSMS	HCT116MG_D190212_S2	2	519.4608764648438	2	519.370278	1036.726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.677	1	48.533	48.033	49.033	-0.1437								0	0	0	0.76967	1	18605	18605		2.0598	0	1		+		37167	11852	23838	23961	35758	35758					0.20911001487093017
VQLNICQK	8	Unmodified	_VQLNICQK_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;MYO10|p.I417Tfs*39|1|0.05|ENSG00000145555|chr5:16764326-16764327|-/ACAAATCTCTG|frameshift_variant;MYO10|p.S468Ffs*8|1|0.05|ENSG00000145555|chr5:16763679-16763680|-/A|frameshift_variant;MYO10|p.N507Qfs*30|1|0.11|ENSG00000145555|chr5:16762613-16762614|-/TG|frameshift_variant;MYO10|p.G1223Rfs*28|1|0.25|ENSG00000145555|chr5:16694504-16694505|-/T|frameshift_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MSMS	HCT116MG_D190212_S4	4	473.2645568847656	2	473.262945	944.511337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.493	1	52.152	51.652	52.652	-0.34023								0	0	0	0.8837	1	19570	19570		9.3474	0	1				37168	3914	23839	23962	35759	35759					0.03686131399683745
VQLQIPRKTV	10	Unmodified	_VQLQIPRKTV_					0	0	0		ENSG00000179364|ENST00000447393|PACS2;ENST00000547903.1_1_14:105848293-105857603:+|nuORF	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MSMS	HCT116MG_D190212_S2	2	591.6527709960938	2	591.371872	1180.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.211	1	38.118	37.618	38.618	-0.09301								0	0	0	0.95648	1	14348	14348		3.2813	0	1				37169	5553	23840	23963	35760	35760					0.14605644593780198
VQLRGHARLG	10	Unmodified	_VQLRGHARLG_					0	0	0			REV__ENST00000470375.1_1_2:238499774-238500225:+|nuORF	REV__ENST00000470375.1_1_2:238499774-238500225:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	553.8306274414062	2	553.830706	1105.64686	0.62708	0.0003473	-2.1074	-0.0011672	-1.4803	-0.00081986	553.829283371533	46.954	1.5459	46.832	45.997	47.543	-0.12175					48	29	2	0	0	0	0.86862	1	17979	17979		6.2058	0	1	28015000	+		37170	15862	23841	23964	35761	35761					0.09826167305504896
VQLRRNNHRL	10	Unmodified	_VQLRRNNHRL_					0	0	0			REV__SIPA1|p.A1018V|1|0.33|ENSG00000213445|chr11:65650639-65650639|C/T|missense_variant	REV__SIPA1|p.A1018V|1|0.33|ENSG00000213445|chr11:65650639-65650639|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	653.3819580078125	2	653.384168	1304.75378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.16	1	55.16	54.66	55.66	0								0	0	0	0.95507	1	21174	21174		3.5965	0	1		+		37171	17517	23842	23965	35762	35762					0.1135971751989473
VQLTKLTL	8	Unmodified	_VQLTKLTL_					0	0	0		VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant;VPS13C|p.N3163Sfs*6|1|0.05|ENSG00000129003|chr15:61882732-61882733|-/TTATCATCAC|frameshift_variant;VPS13C|p.P3597Lfs*3|1|0.26|ENSG00000129003|chr15:61868732-61868732|G/-|frameshift_variant;nc|ENSG00000129003|Q709C8-2|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C	VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	VPS13C|p.E2463Nfs*18|1|0.25|ENSG00000129003|chr15:61920157-61920157|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	458.29705810546875	2	458.29731	914.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.485	1	37.485	36.985	37.985	0								0	0	0	0.8837	1	14006	14006		10.183	0	1				37172	3019	23843	23966	35763	35763					0.11936118971038923
VQMDKIENY	9	Unmodified	_VQMDKIENY_					0	0	0			REV__tr|U7STL9|U7STL9_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01108PE=4SV=1	REV__tr|U7STL9|U7STL9_FUSNUMORNrepeatproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01108PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	569.8036499023438	2	570.273706	1138.53286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.768	1	33.478	32.978	33.978	-0.29013								0	0	0	0.76694	1	12406	12406		11.64	0.81637	1		+		37173	17806	23844	23967	35764	35764					-0.030865283622460993
VQNITANLSV	10	Unmodified	_VQNITANLSV_					0	0	0		ADAMTS18|p.R651Gfs*51|1|0.31|ENSG00000140873|chr16:77325948-77325948|A/-|frameshift_variant	ADAMTS18|p.R651Gfs*51|1|0.31|ENSG00000140873|chr16:77325948-77325948|A/-|frameshift_variant	ADAMTS18|p.R651Gfs*51|1|0.31|ENSG00000140873|chr16:77325948-77325948|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.7796020507812	2	529.795663	1057.57677	0.57237	0.00030324	0.87278	0.0004624	1.4452	0.00076564	529.7958872852838	48.622	0.15208	48.478	48.388	48.54	-0.1437					4	2	2	0	0	0	0.27368	1	18586	18586		21.59	0	1	15152000			37174	45	23845	23968	35765	35765					0.05028824126361542
VQNLPALT	8	Unmodified	_VQNLPALT_					0	0	0			REV__SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	REV__SLC16A1|p.F275Lfs*37|1|0.39|ENSG00000155380|chr1:112917581-112917581|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	428.2488708496094	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.013	1	38.632	38.132	39.132	-0.38055								0	0	0	0.8837	1	14319	14319		0.69038	0	1		+		37175	12699	23846	23969	35766	35766					0.05310399868733384
VQNMANQVPR	10	Unmodified	_VQNMANQVPR_					0	0	0			REV__nc|ENSG00000143442|Q7Z3K3-7|POGZ	REV__nc|ENSG00000143442|Q7Z3K3-7|POGZ	MSMS	HCT116MG_D190212_S3	3	386.20318603515625	3	386.201235	1155.58188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.509	1	27.326	26.826	27.826	-0.18337								0	0	0	0.94339	1	9917	9917		3.3196	0	1		+		37176	12393	23847	23970	35767	35767					0.010308047173566592
VQPGPCLVP	9	Unmodified	_VQPGPCLVP_					0	0	0		ENST00000596287.5_1_19:51301980-51302067:-|nuORF	ENST00000596287.5_1_19:51301980-51302067:-|nuORF	ENST00000596287.5_1_19:51301980-51302067:-|nuORF	MSMS	HCT116MG_D190212_S4	4	455.2480163574219	2	455.246763	908.478974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.831	1	45.459	44.959	45.959	-0.37206								0	0	0	0.76641	1	16921	16921		13.508	3.3245	1				37177	9063	23848	23971	35768	35768					0.021073439966926344
VQPGPPGL	8	Unmodified	_VQPGPPGL_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MSMS	HCT116MG_D190212_S3	3	382.7173156738281	2	382.718696	763.422839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.391	1	53.088	52.588	53.588	-0.30305								0	0	0	0.8837	1	20206	20206		0.69038	0	1		+		37178	14375	23849	23972	35769	35769					0.03166459151509571
VQPGRQQP	8	Unmodified	_VQPGRQQP_					0	0	0		ENST00000309957.2_2_13:111289482-111290624:+|nuORF	ENST00000309957.2_2_13:111289482-111290624:+|nuORF	ENST00000309957.2_2_13:111289482-111290624:+|nuORF	MSMS	HCT116MG_D190212_S4	4	455.2486267089844	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.233	1	38.853	38.353	39.353	-0.38055								0	0	0	0.8837	1	14408	14408		4.756	0.42677	1				37179	7043	23850	23973	35770	35770					0.024911498147503153
VQPHHRLWWYN	11	Unmodified	_VQPHHRLWWYN_					0	0	0			REV__ENST00000467388.1_1_2:216203501-216211697:+|nuORF	REV__ENST00000467388.1_1_2:216203501-216211697:+|nuORF	MSMS	HCT116MG_D190212_S1	1	768.3881225585938	2	768.386377	1534.7582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.144	1	20.144	19.644	20.644	0								0	0	0	0.95196	1	7025	7025		5.2969	2.0156	1		+		37180	10006	23851	23974	35771	35771					0.012211819428102899
VQPIFSAN	8	Unmodified	_VQPIFSAN_					0	0	0			REV__ENSG00000176542|ENST00000316407|USF3	REV__ENSG00000176542|ENST00000316407|USF3	MSMS	HCT116MG_D190212_S1	1	438.23291015625	2	438.23471	874.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.259	1	58.259	57.759	58.759	0								0	0	0	0.8837	1	22437	22437		2.3027	0	1		+		37181	13545	23852	23975	35772	35772					0.012618268346614059
VQPLLKHIKKR	11	Unmodified	_VQPLLKHIKKR_					0	0	0		TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant	TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant	TAF1L|p.K665Rfs*4|2|0.06|ENSG00000122728|chr9:32633586-32633586|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	680.4500732421875	2	680.450988	1358.88742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.923	1	58.923	58.423	59.423	0								0	0	0	0.96141	1	22711	22711		0.35063	0	1				37182	18254	23853	23976	35773	35773					0.2223356357285411
VQPYLDDFQK	10	Unmodified	_VQPYLDDFQK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	HCT116MG_D190212_S1	1	626.8142700195312	2	626.814053	1251.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.21	1	40.21	39.71	40.71	0								0	0	0	0.082871	1	15106	15106		86.332	44.376	1				37183	2597	23854	23977	35774	35774					-0.002189240477491694
VQPYLDDFQK	10	Unmodified	_VQPYLDDFQK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S3	3	627.3147583007812	2	626.814053	1251.61355	0.40046	0.00025102	-0.53205	-0.0003335	-0.13159	-8.2482E-05	626.8138629451905	40.439	0.41651	40.137	39.903	40.319	-0.30161					13	7	2	0	0	0	0.037651	1	14996	14996		96.367	58.191	1	20834000			37184	2597	23854	23977	35775	35775					-0.002189240477491694
VQPYLDDFQK	10	Unmodified	_VQPYLDDFQK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S4	4	627.3159790039062	2	626.814053	1251.61355	0.3768	0.00023618	0.077309	4.8459E-05	0.45411	0.00028464	626.8139176345653	40.516	0.34396	40.138	39.942	40.286	-0.37828					18	6	4	0	0	0	0.021264	1	14862	14862		118.07	72.369	1	14122000			37185	2597	23854	23977	35776	35776					-0.002189240477491694
VQPYLDDFQK	10	Unmodified	_VQPYLDDFQK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	626.814053	1251.61355	0.55324	0.00034678	-0.84925	-0.00053232	-0.29601	-0.00018554	626.8138654493691	40.165	0.36432	40.092	39.945	40.31	-0.072838	-0.030354	-0.00082396	NaN	118.07	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14509000			37186	2597	23854	23977							-0.002189240477491694
VQQIQQPAP	9	Unmodified	_VQQIQQPAP_					0	0	0			REV__ENST00000547247.5_1_12:50479152-50482438:+|nuORF	REV__ENST00000547247.5_1_12:50479152-50482438:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	505.21661376953125	2	504.777274	1007.53999	0.33269	0.00016793	0.05274	2.6622E-05	0.38543	0.00019455	504.77730204017706	11.786	0.18977	11.496	11.412	11.601	-0.28953					10	7	2	0	0	0	0.71345	1	3797	3797		4.3292	0	1	403280	+		37187	10710	23855	23978	35777	35777					0.03652572300461543
VQQLAENTRY	10	Unmodified	_VQQLAENTRY_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MSMS	HCT116MG_D190212_S2	2	611.3123779296875	2	611.314751	1220.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.618	1	39.54	39.04	40.04	-0.077835								0	0	0	0.95507	1	14917	14917		3.5965	0.31518	1				37188	1719	23856	23979	35778	35778					0.013467100410252897
VQRGLVTFEE	10	Unmodified	_VQRGLVTFEE_					0	0	0			REV__ENSG00000176971|ENST00000318627|FIBIN	REV__ENSG00000176971|ENST00000318627|FIBIN	MSMS	HCT116MG_D190212_S2	2	393.2132568359375	3	393.211906	1176.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.067	1	44.974	44.474	45.474	-0.092472								0	0	0	0.91667	1	17129	17129		12.175	4.0192	1		+		37189	13557	23857	23980	35779	35779					0.032644956721242124
VQRGPHST	8	Unmodified	_VQRGPHST_					0	0	0		ENST00000261497.8_1_17:20906024-20906111:-|nuORF	ENST00000261497.8_1_17:20906024-20906111:-|nuORF	ENST00000261497.8_1_17:20906024-20906111:-|nuORF	MSMS	HCT116MG_D190212_S1	1	441.2328796386719	2	441.233033	880.451513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.888	1	57.888	57.388	58.388	0								0	0	0	0.8837	1	22285	22285		5.2307	0.47466	1				37190	6853	23858	23981	35780	35780					0.006505767806629592
VQRKVRPP	8	Unmodified	_VQRKVRPP_					0	0	0			REV__PALM3|p.D604Mfs*118|1|0.23|ENSG00000187867|chr19:14053817-14053817|C/-|frameshift_variant	REV__PALM3|p.D604Mfs*118|1|0.23|ENSG00000187867|chr19:14053817-14053817|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	490.181640625	2	490.311618	978.608683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.409	1	48.265	47.765	48.765	-0.1437								0	0	0	0.8837	1	18494	18494		10.183	0.83596	1		+		37191	17381	23859	23982	35781	35781					0.1185228139083847
VQRLRSGRRPE	11	Unmodified	_VQRLRSGRRPE_					0	0	0		ENST00000601336.5_1_19:41770758-41770881:+|nuORF	ENST00000601336.5_1_19:41770758-41770881:+|nuORF	ENST00000601336.5_1_19:41770758-41770881:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	677.3952026367188	2	677.394733	1352.77491	0.58272	0.00039473	0.64986	0.00044021	1.2326	0.00083494	677.3950718660543	51.26	0.92847	51.26	50.523	51.451	0					58	17	5	0	0	0	0.74191	1	19352	19352		1.3295	1.3295	1	92971000			37192	9088	23860	23983	35782	35782					0.11263682828735
VQRRRKMV	8	Unmodified	_VQRRRKMV_					0	0	0			REV__ENST00000600228.5_1_19:52619893-52620010:-|nuORF	REV__ENST00000600228.5_1_19:52619893-52620010:-|nuORF	MSMS	HCT116MG_D190212_S3	3	358.222412109375	3	358.222193	1071.64475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.76	1	57.486	56.986	57.986	-0.27434								0	0	0	0.8837	1	21958	21958		1.6526	0.45928	1		+		37193	16745	23861	23984	35783	35783					0.11179415296032857
VQRRRLVRIPR	11	Unmodified	_VQRRRLVRIPR_					0	0	0			REV__ENST00000451759.5_1_1:163218411-163276054:-|nuORF	REV__ENST00000451759.5_1_1:163218411-163276054:-|nuORF	MSMS	HCT116MG_D190212_S3	3	483.64971923828125	3	483.651415	1447.93242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.8	1	49.484	48.984	49.984	-0.31525								0	0	0	0.95976	1	18762	18762		1.2148	0.84816	1		+		37194	15713	23862	23985	35784	35784					0.22636807158778538
VQRSSIGG	8	Unmodified	_VQRSSIGG_					0	0	0			REV__PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	REV__PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	402.22332763671875	2	402.222134	802.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.369	1	55.051	54.551	55.551	-0.31774								0	0	0	0.8837	1	20730	20730		5.7604	0	1		+		37195	11853	23863	23986	35785	35785					0.02059772032100682
VQRVSLLLLYY	11	Unmodified	_VQRVSLLLLYY_					0	0	0		nc|ENSG00000148482|Q504Y0-2|SLC39A12;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	MSMS	HCT116MG_D190212_S2	2	683.9068603515625	2	683.908288	1365.80202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.346	1	43.273	42.773	43.773	-0.073376								0	0	0	0.95581	1	16433	16433		3.2813	0.54611	1				37196	4025	23864	23987	35786	35786					0.13375353596575223
VQRWHYGKVCL	11	Unmodified	_VQRWHYGKVCL_					0	0	0		ZDHHC16|p.R40H|1|0.15|ENSG00000171307|chr10:97451794-97451794|G/A|missense_variant	ZDHHC16|p.R40H|1|0.15|ENSG00000171307|chr10:97451794-97451794|G/A|missense_variant	ZDHHC16|p.R40H|1|0.15|ENSG00000171307|chr10:97451794-97451794|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	694.864990234375	2	694.866431	1387.71831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.71	1	55.422	54.922	55.922	-0.28773								0	0	0	0.95581	1	21134	21134		3.2813	1.6287	1				37197	18710	23865	23988	35787	35787					0.039959189478395274
VQSELEVSG	9	Unmodified	_VQSELEVSG_					0	0	0			REV__nc|ENSG00000152242|Q96B23-2|ARK2N	REV__nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-MSMS	HCT116MG_D190212_S2	2	474.23760986328125	2	474.237647	946.460741	0.1411	6.6915E-05	-0.063404	-3.0069E-05	0.077695	3.6846E-05	474.2375989820156	15.756	0.41768	15.421	15.219	15.637	-0.33451					12	7	2	0	0	0	0.24895	1	5265	5265		36.127	3.8215	1	4977300	+		37198	12626	23866	23989	35788	35788					-0.014631194443154527
VQSIALTLQV	10	Unmodified	_VQSIALTLQV_					0	0	0		ENST00000530420.5_1_15:28896588-28900598:+|nuORF;ENST00000424611.5_1_15:20644728-20658919:-|nuORF;ENST00000437318.5_1_15:20588586-20648641:-|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000530420.5_1_15:28896588-28900598:+|nuORF	ENST00000530420.5_1_15:28896588-28900598:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	536.32421875	2	536.324057	1070.63356	0.82194	0.00044082	-1.4509	-0.00077814	-0.62895	-0.00033732	536.3236800558658	43.665	0.30846	43.587	43.453	43.762	-0.078369					9	5	3	0	0	0	0.24395	1	16592	16592		55.503	2.0987	1	19579000			37199	7806	23867	23990	35789	35789					0.10106871682887686
VQSQSETTNSK	11	Unmodified	_VQSQSETTNSK_					0	0	0			REV__ENST00000507284.2_1_4:119114562-119114895:-|nuORF	REV__ENST00000507284.2_1_4:119114562-119114895:-|nuORF	MSMS	HCT116MG_D190212_S1	1	604.7918701171875	2	604.791306	1207.56806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.457	1	10.457	9.9574	10.957	0								0	0	0	0.96208	1	3211	3211		0	0	1		+		37200	16155	23868	23991	35790	35790					-0.027421943007993832
VQSQSETTNSK	11	Unmodified	_VQSQSETTNSK_					0	0	0			REV__ENST00000507284.2_1_4:119114562-119114895:-|nuORF	REV__ENST00000507284.2_1_4:119114562-119114895:-|nuORF	MSMS	HCT116MG_D190212_S1	1	604.7913818359375	2	604.791306	1207.56806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.03	1	11.03	10.53	11.53	0								0	0	0	0.96208	1	3435	3435		0	0	1		+		37201	16155	23868	23991	35791	35791					-0.027421943007993832
VQSSEMEEAYC	11	Unmodified	_VQSSEMEEAYC_					0	0	0			REV__ENST00000497479.1_1_18:74809335-74845477:-|nuORF	REV__ENST00000497479.1_1_18:74809335-74845477:-|nuORF	MSMS	HCT116MG_D190212_S2	2	638.249267578125	2	638.247028	1274.4795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.313	1	48.169	47.669	48.669	-0.1437								0	0	0	0.9465	1	18454	18454		8.1555	2.4237	1		+		37202	16007	23869	23992	35792	35792					-0.14675693927074462
VQSSLKAA	8	Unmodified	_VQSSLKAA_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MSMS	HCT116MG_D190212_S3	3	402.2331848144531	2	402.23471	802.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.956	1	27.768	27.268	28.268	-0.18847								0	0	0	0.8837	1	10097	10097		2.3027	0	1		+		37203	13744	23870	23993	35793	35793					0.045738268346440236
VQTLGLAPA	9	Unmodified	_VQTLGLAPA_					0	0	0			REV__PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant	REV__PERM1|p.Q529Rfs*39|1|0.27|ENSG00000187642|chr1:979445-979445|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	435.2586669921875	2	435.258185	868.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.212	1	36.212	35.712	36.712	0								0	0	0	0.74083	1	13495	13495		17.113	0	1		+		37204	13928	23871	23994	35794	35794					0.062306863857997996
VQTPKVWSLF	10	Unmodified	_VQTPKVWSLF_					0	0	0		nc|ENSG00000158089|Q96FL9-3|GALNT14	nc|ENSG00000158089|Q96FL9-3|GALNT14	nc|ENSG00000158089|Q96FL9-3|GALNT14	MSMS	HCT116MG_D190212_S1	1	602.8414306640625	2	602.839874	1203.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.459	1	49.459	48.959	49.959	0								0	0	0	0.92607	1	18847	18847		10.074	0.6908	1				37205	9509	23872	23995	35795	35795					0.07150864436835036
VQTPRRALL	9	Unmodified	_VQTPRRALL_					0	0	0		ENST00000606372.5_1_1:2263981-2323005:-|nuORF	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	527.3302001953125	2	527.330008	1052.64546	0.37153	0.00019592	-0.42015	-0.00022156	-0.048626	-2.5642E-05	527.3297836717566	39.58	0.25134	39.502	39.379	39.631	-0.077835					9	4	3	0	0	0	0.43775	1	14921	14921		20.454	0.039092	1	95943000			37206	9111	23873	23996	35796	35796					0.12124533216751843
VQVATPAL	8	Unmodified	_VQVATPAL_					0	0	0		ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant;ATG2B|p.F1495Lfs*16|1|0.09|ENSG00000066739|chr14:96306735-96306735|A/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B	ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant	ATG2B|p.Q1407Lfs*8|1|0.06|ENSG00000066739|chr14:96309536-96309537|-/AATAA|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	399.7384948730469	2	399.739628	797.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.368	1	48.224	47.724	48.724	-0.1437								0	0	0	0.8837	1	18477	18477		5.2307	0	1				37207	213	23874	23997	35797	35797					0.057870148400297694
VQVELRRRQ	9	Unmodified	_VQVELRRRQ_					0	0	0			REV__nc|ENSG00000214193|A4FU49|SH3D21	REV__nc|ENSG00000214193|A4FU49|SH3D21	MSMS	HCT116MG_D190212_S4	4	592.3543090820312	2	592.354545	1182.69454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.448	1	36.062	35.562	36.562	-0.38558								0	0	0	0.76978	1	13338	13338		1.6526	0	1		+		37208	14263	23875	23998	35798	35798					0.11049821505707769
VQVILLPQSP	10	Unmodified	_VQVILLPQSP_					0	0	0		ENST00000601334.5_1_19:53396789-53400881:-|nuORF	ENST00000601334.5_1_19:53396789-53400881:-|nuORF	ENST00000601334.5_1_19:53396789-53400881:-|nuORF	MSMS	HCT116MG_D190212_S1	1	547.3327026367188	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.233	1	52.233	51.733	52.733	0								0	0	0	0.95648	1	19973	19973		3.2813	0	1				37209	9087	23876	23999	35799	35799					0.11167462062576305
VQVILLPQSP	10	Unmodified	_VQVILLPQSP_					0	0	0		ENST00000601334.5_1_19:53396789-53400881:-|nuORF	ENST00000601334.5_1_19:53396789-53400881:-|nuORF	ENST00000601334.5_1_19:53396789-53400881:-|nuORF	MSMS	HCT116MG_D190212_S1	1	547.3319091796875	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.494	1	52.494	51.994	52.994	0								0	0	0	0.95648	1	20080	20080		3.2813	0	1				37210	9087	23876	23999	35800	35800					0.11167462062576305
VQVILRRML	9	Unmodified	_VQVILRRML_					0	0	0		ENSG00000130312|ENST00000252602|MRPL34	ENSG00000130312|ENST00000252602|MRPL34	ENSG00000130312|ENST00000252602|MRPL34	MSMS	HCT116MG_D190212_S1	1	564.3588256835938	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.218	1	55.218	54.718	55.718	0								0	0	0	0.76967	1	21198	21198		2.0598	0	1				37211	3072	23877	24000	35801	35801					0.14258623412865745
VQVILRRML	9	Unmodified	_VQVILRRML_					0	0	0		ENSG00000130312|ENST00000252602|MRPL34	ENSG00000130312|ENST00000252602|MRPL34	ENSG00000130312|ENST00000252602|MRPL34	MSMS	HCT116MG_D190212_S3	3	564.3590698242188	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.098	1	54.806	54.306	55.306	-0.2918								0	0	0	0.76967	1	20892	20892		2.0598	0	1				37212	3072	23877	24000	35802	35802					0.14258623412865745
VQVLKKLATRK	11	Unmodified	_VQVLKKLATRK_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;NLRC5|p.P816Rfs*30|1|0.28|ENSG00000140853|chr16:57031430-57031430|C/-|frameshift_variant;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;NLRC5|p.H1717Ifs*29|2|0.41|ENSG00000140853|chr16:57079112-57079112|C/-|frameshift_variant;NLRC5|p.K611Rfs*3|1|0.42|ENSG00000140853|chr16:57026773-57026773|A/-|frameshift_variant;nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MSMS	HCT116MG_D190212_S2	2	642.4279174804688	2	642.429722	1282.84489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.709	1	49.545	49.045	50.045	-0.16369								0	0	0	0.95686	1	19033	19033		2.7352	0	1				37213	3689;9478	23878	24001	35803	35803					0.21478168444627954
VQVLLTTV	8	Unmodified	_VQVLLTTV_					0	0	0		ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	MSMS	HCT116MG_D190212_S4	4	436.77496337890625	2	436.776211	871.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.153	1	54.836	54.336	55.336	-0.31774								0	0	0	0.8837	1	20643	20643		2.5775	0	1				37214	3754	23879	24002	35804	35804					0.0969614356265538
VQVLVLKSKN	10	Unmodified	_VQVLVLKSKN_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000504447.1_1_5:147812919-147813335:+|nuORF	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MSMS	HCT116MG_D190212_S2	2	564.359130859375	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.215	1	50.043	49.543	50.543	-0.1719								0	0	0	0.95648	1	19241	19241		3.2813	0	1				37215	3927	23880	24003	35805	35805					0.14910839845242663
VQVLVLKSKN	10	Unmodified	_VQVLVLKSKN_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000504447.1_1_5:147812919-147813335:+|nuORF	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MSMS	HCT116MG_D190212_S3	3	564.359619140625	2	564.360973	1126.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.47	1	50.156	49.656	50.656	-0.31381								0	0	0	0.94339	1	19032	19032		6.2058	0	1				37216	3927	23880	24003	35806	35806					0.14910839845242663
VQVPVQAA	8	Unmodified	_VQVPVQAA_					0	0	0			REV__nc|ENSG00000171467|Q5VUA4-2|ZNF318	REV__nc|ENSG00000171467|Q5VUA4-2|ZNF318	MSMS	HCT116MG_D190212_S4	4	406.23468017578125	2	406.237253	810.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.881	1	49.519	49.019	50.019	-0.36213								0	0	0	0.8837	1	18515	18515		0.69038	0	1		+		37217	13347	23881	24004	35807	35807					0.04714130697266228
VQVQFRLLI	9	Unmodified	_VQVQFRLLI_					0	0	0		ENST00000431285.5_1_3:9471659-9471731:+|nuORF	ENST00000431285.5_1_3:9471659-9471731:+|nuORF	ENST00000431285.5_1_3:9471659-9471731:+|nuORF	MSMS	HCT116MG_D190212_S2	2	558.1634521484375	2	558.350409	1114.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.356	1	49.202	48.702	49.702	-0.15405								0	0	0	0.768	1	18887	18887		7.9102	0	1				37218	7854	23882	24005	35808	35808					0.13350874536376978
VQVQLNLIIEG	11	Unmodified	_VQVQLNLIIEG_					0	0	0			REV__DSCAM|p.D1368G|1|0.07|ENSG00000171587|chr21:40085631-40085631|T/C|missense_variant	REV__DSCAM|p.D1368G|1|0.07|ENSG00000171587|chr21:40085631-40085631|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	613.3588256835938	2	613.36117	1224.70779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.394	1	49.394	48.894	49.894	0								0	0	0	0.94942	1	18820	18820		6.6304	1.3335	1		+		37219	10412	23883	24006	35809	35809					0.10442214774411696
VQVQRDRDE	9	Unmodified	_VQVQRDRDE_					0	0	0		ENST00000475911.2_1_1:159846344-159850487:-|nuORF;ENST00000476696.5_1_1:159842277-159846563:-|nuORF;nc|ENSG00000213085|Q9UL16-2|CFAP45;ENSG00000213085|ENST00000368099|CFAP45	ENST00000475911.2_1_1:159846344-159850487:-|nuORF	ENST00000475911.2_1_1:159846344-159850487:-|nuORF	MSMS	HCT116MG_D190212_S3	3	572.7906494140625	2	572.788901	1143.56325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.34	1	31.073	30.573	31.573	-0.26644								0	0	0	0.61599	1	11446	11446		23.148	2.6948	1				37220	6407	23884	24007	35810	35810					-0.002790336528505577
VQVQTLIVVI	10	Unmodified	_VQVQTLIVVI_					0	0	0		nc|ENSG00000188818|Q9H8X9-2|ZDHHC11;ENSG00000206077|ENST00000508859|ZDHHC11B;ENSG00000188818|ENST00000283441|ZDHHC11	nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	MSMS	HCT116MG_D190212_S1	1	556.35595703125	2	556.357899	1110.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.396	1	49.396	48.896	49.896	0								0	0	0	0.94551	1	18821	18821		5.7319	0.83484	1				37221	6004	23885	24008	35811	35811					0.15032321613716704
VQVRNPLN	8	Unmodified	_VQVRNPLN_					0	0	0		ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	MULTI-MSMS	HCT116MG_D190212_S3	3	470.2718505859375	2	470.272158	938.529764	0.14019	6.5928E-05	-0.15399	-7.2416E-05	-0.013797	-6.4883E-06	470.27199222343245	50.445	0.9377	50.13	49.708	50.645	-0.31437					28	17	2	0	0	0	0.85329	1	18970	18970		4.756	0	1	18160000			37222	2986	23886	24009	35812	35812					0.058040093658974
VQVRREEKNAD	11	Unmodified	_VQVRREEKNAD_					0	0	0			REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	MSMS	HCT116MG_D190212_S3	3	672.3563842773438	2	672.354939	1342.69533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.295	1	28.089	27.589	28.589	-0.20593								0	0	0	0.94538	1	10234	10234		8.7454	0.58988	1		+		37223	17311	23887	24010	35813	35813					0.037685713640939866
VQVRSPVNQLR	11	Unmodified	_VQVRSPVNQLR_					0	0	0		ENST00000367034.4_1_6:160211657-160212023:+|nuORF	ENST00000367034.4_1_6:160211657-160212023:+|nuORF	ENST00000367034.4_1_6:160211657-160212023:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	648.3794555664062	2	648.38076	1294.74697	0.65764	0.0004264	-0.75542	-0.0004898	-0.097782	-6.34E-05	648.3801183279251	51.147	1.3999	50.969	50.132	51.532	-0.17869					41	26	2	0	0	0	0.74191	1	19534	19534		4.897	4.897	1	19750000			37224	7376	23888	24011	35814	35814					0.11138359848632717
VQVRVRIPP	9	Unmodified	_VQVRVRIPP_					0	0	0			REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MSMS	HCT116MG_D190212_S2	2	532.3411254882812	2	532.340375	1062.6662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.514	1	15.187	14.687	15.687	-0.32684								0	0	0	0.76877	1	5160	5160		5.2307	0	1		+		37225	12847	23889	24012	35815	35815					0.13737123596411038
VQVTKRRLR	9	Unmodified	_VQVTKRRLR_					0	0	0		ENST00000529540.5_1_11:47269870-47282963:+|nuORF	ENST00000529540.5_1_11:47269870-47282963:+|nuORF	ENST00000529540.5_1_11:47269870-47282963:+|nuORF	MSMS	HCT116MG_D190212_S4	4	578.3749389648438	2	578.375281	1154.73601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.366	1	42.992	42.492	43.492	-0.37433								0	0	0	0.7701	1	15939	15939		0.52476	0.066424	1				37226	8608	23890	24013	35816	35816					0.1648300226502215
VQVTQHLHS	9	Unmodified	_VQVTQHLHS_					0	0	0			REV__SZT2|p.A45V|1|0.28|ENSG00000198198|chr1:43403283-43403283|C/T|missense_variant	REV__SZT2|p.A45V|1|0.28|ENSG00000198198|chr1:43403283-43403283|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	524.78759765625	2	524.780348	1047.54614	0.32442	0.00017025	-0.15053	-7.8995E-05	0.17389	9.1253E-05	524.7801604067322	20.156	0.88416	19.781	19.143	20.027	-0.37503					34	16	3	0	0	0	0.16144	1	6944	6944		46.021	0	1	24580000	+		37227	17611	23891	24014	35817	35817					0.024270905319781377
VQVYFKPV	8	Unmodified	_VQVYFKPV_					0	0	0			REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MSMS	HCT116MG_D190212_S3	3	490.28533935546875	2	490.284203	978.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.603	1	28.397	27.897	28.897	-0.20593								0	0	0	0.8837	1	10358	10358		8.5933	1.8701	1		+		37228	13866	23892	24015	35818	35818					0.06371849799563734
VQWDEDSVEYM	11	Unmodified	_VQWDEDSVEYM_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1;XYLT1|p.V724Sfs*55|1|0.34|ENSG00000103489|chr16:17127720-17127720|T/-|frameshift_variant;ENST00000575674.1_1_16:17292067-17352884:-|nuORF	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MSMS	HCT116MG_D190212_S2	2	467.8599853515625	3	467.527342	1399.5602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.379	1	48.235	47.735	48.735	-0.1437								0	0	0	0.95954	1	18482	18482		0.45452	0	1				37229	1896	23893	24016	35819	35819					-0.12360089612525371
VQWHRRTIRGW	11	Unmodified	_VQWHRRTIRGW_					0	0	0			REV__ENST00000575245.5_2_17:79010744-79031686:+|nuORF	REV__ENST00000575245.5_2_17:79010744-79031686:+|nuORF	MSMS	HCT116MG_D190212_S3	3	747.9132080078125	2	747.913093	1493.81163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.204	1	41.9	41.4	42.4	-0.30352								0	0	0	0.95581	1	15715	15715		3.2813	0	1		+		37230	16601	23894	24017	35820	35820					0.08447979445304554
VQYFWDRGHRD	11	Unmodified	_VQYFWDRGHRD_					0	0	0		ENSG00000100441|ENST00000553935|KHNYN	ENSG00000100441|ENST00000553935|KHNYN	ENSG00000100441|ENST00000553935|KHNYN	MULTI-MSMS	HCT116MG_D190212_S3	3	739.850341796875	2	739.849824	1477.6851	0.5176	0.00038294	-0.75871	-0.00056134	-0.24112	-0.00017839	739.8491166664824	35.267	0.88243	34.968	34.178	35.061	-0.29922					35	16	3	0	0	0	0.74191	1	12986	12986		4.897	1.9018	1	8324900			37231	1711	23895	24018	35821	35821					-0.03463991570492908
VQYHGQHRV	9	Unmodified	_VQYHGQHRV_					0	0	0		ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	MSMS	HCT116MG_D190212_S2	2	562.29150390625	2	562.291414	1122.56827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.221	1	15.887	15.387	16.387	-0.33451								0	0	0	0.090763	1	5444	5444		58.679	31.795	1				37232	8792	23896	24019	35822	35822					0.011893150004198105
VRAHINNS	8	Unmodified	_VRAHINNS_					0	0	0		nc|ENSG00000064102|Q9NVM9-2|INTS13;ENSG00000064102|ENST00000261191|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	MSMS	HCT116MG_D190212_S1	1	455.7477722167969	2	455.746308	909.478063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.677	1	18.677	18.177	19.177	0								0	0	0	0.85589	1	6434	6434		18.135	0	1				37233	1135	23897	24020	35823	35823					0.019702656719914557
VRAKGAAR	8	Unmodified	_VRAKGAAR_					0	0	0			REV__ENST00000376723.7_1_2:128848788-128848986:+|nuORF	REV__ENST00000376723.7_1_2:128848788-128848986:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	828.5172729492188	1	828.516245	827.508969	0.74437	0.00061672	0.1931	0.00015999	0.93747	0.00077671	828.5162530705367	47.672	0.54993	47.672	47.395	47.944	0					36	10	5	0	0	0	0.86564	1	18082	18082		2.5775	0	1	3063099999.9999995	+		37234	15228	23898	24021	35824	35824					0.08831463776891724
VRAKGAAR	8	Unmodified	_VRAKGAAR_					0	0	0			REV__ENST00000376723.7_1_2:128848788-128848986:+|nuORF	REV__ENST00000376723.7_1_2:128848788-128848986:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	828.516245	827.508969	0.74437	0.00061672	0.1931	0.00015999	0.93747	0.00077671	828.5162530705367	47.672	0.54993	47.672	47.395	47.944	0	-0.17333	0.00032976	NaN	2.5775	36	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3063099999.9999995	+		37235	15228	23898	24021							0.08831463776891724
VRAKGAAR	8	Unmodified	_VRAKGAAR_					0	0	0			REV__ENST00000376723.7_1_2:128848788-128848986:+|nuORF	REV__ENST00000376723.7_1_2:128848788-128848986:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	828.516245	827.508969	1.0726	0.0008887	-0.24201	-0.00020051	0.83062	0.00068818	828.5158679632755	48.151	0.91364	48.018	47.79	48.704	-0.13281	0.17333	-3.074E-05	NaN	2.5775	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2377000000	+		37236	15228	23898	24021							0.08831463776891724
VRARKKRPP	9	Unmodified	_VRARKKRPP_					0	0	0			REV__ENST00000558893.5_1_15:79165359-79184661:+|nuORF	REV__ENST00000558893.5_1_15:79165359-79184661:+|nuORF	MSMS	HCT116MG_D190212_S1	1	554.364013671875	2	554.364716	1106.71488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.868	1	14.868	14.368	15.368	0								0	0	0	0.7696	1	4899	4899		2.3027	0	1		+		37237	13856	23899	24022	35825	35825					0.16579036956159143
VRASYHYHD	9	Unmodified	_VRASYHYHD_					0	0	0			REV__SEC16A|p.R1274H|1|0.26|ENSG00000148396|chr9:136467065-136467065|C/T|missense_variant	REV__SEC16A|p.R1274H|1|0.26|ENSG00000148396|chr9:136467065-136467065|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	383.21484375	3	383.180828	1146.52066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.591	1	29.591	29.091	30.091	0								0	0	0	0.768	1	10821	10821		4.897	0	1		+		37238	17501	23900	24023	35826	35826					-0.046743839904365814
VRDWRVLPA	9	Unmodified	_VRDWRVLPA_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;HMCN2|p.P4784Qfs*22|1|0.32|ENSG00000148357|chr9:130430363-130430363|C/-|frameshift_variant;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MSMS	HCT116MG_D190212_S1	1	371.2176208496094	3	371.217214	1110.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.085	1	42.085	41.585	42.585	0								0	0	0	0.76809	1	15864	15864		7.609	0	1				37239	4020	23901	24024	35827	35827					0.0789224669970281
VREEKTRKRKR	11	Unmodified	_VREEKTRKRKR_					0	0	0		nc|ENSG00000167562|Q9NV72|ZNF701	nc|ENSG00000167562|Q9NV72|ZNF701	nc|ENSG00000167562|Q9NV72|ZNF701	MULTI-MSMS	HCT116MG_D190212_S1	1	743.9602661132812	2	743.457865	1484.90118	0.70349	0.00052302	0.25327	0.0001883	0.95676	0.00071131	743.9594763606659	61.705	1.4017	61.705	61.106	62.508	0					42	26	2	0	0	0	0.74191	4	23748	23748;23823;23915;24081		1.0715	1.0715	1	6826600			37240	9537	23902	24025	35828;35829;35830;35831	35828					0.17812189333994866
VREILHNL	8	Unmodified	_VREILHNL_					0	0	0		nc|ENSG00000187775|Q9UFH2-4|DNAH17;ENST00000589793.1_1_17:76539878-76567391:-|nuORF;DNAH17|p.R1580Gfs*23|1|0.38|ENSG00000187775|chr17:78506785-78506785|G/-|frameshift_variant;DNAH17|p.K2058Qfs*32|1|0.09|ENSG00000187775|chr17:78494691-78494692|-/G|frameshift_variant;DNAH17|p.D2341Tfs*111|1|0.32|ENSG00000187775|chr17:78486305-78486305|G/-|frameshift_variant;DNAH17|p.G2596Afs*13|1|0.33|ENSG00000187775|chr17:78479600-78479600|G/-|frameshift_variant;DNAH17|p.K3895Nfs*2|1|0.24|ENSG00000187775|chr17:78439210-78439210|T/-|frameshift_variant;DNAH17|p.N4131Tfs*34|2|0.38|ENSG00000187775|chr17:78429136-78429136|G/-|frameshift_variant;ENSG00000187775|ENST00000389840|DNAH17	nc|ENSG00000187775|Q9UFH2-4|DNAH17	nc|ENSG00000187775|Q9UFH2-4|DNAH17	MULTI-MSMS	HCT116MG_D190212_S2	2	497.8059997558594	2	497.295633	992.576714	0.38014	0.00018904	-0.055353	-2.7527E-05	0.32479	0.00016151	497.29551152104426	34.169	0.3111	33.993	33.864	34.175	-0.17512					15	5	4	0	0	0	0.7524	1	12652	12652		16.942	0	1	324380000			37241	700	23903	24026	35832	35832					0.0801286891704649
VRGPFPIIV	9	Unmodified	_VRGPFPIIV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S3	3	499.3131408691406	2	499.313295	996.612037	0.49209	0.00024571	-0.21856	-0.00010913	0.27353	0.00013658	499.3130303787499	55.832	0.31742	55.544	55.358	55.675	-0.28773					9	5	2	0	0	0	0.33687	1	21197	21197		26.884	11.115	1	3544600		+	37242	549	23904	24027	35833	35833					0.1135953144485029
VRGPFPIIV	9	Unmodified	_VRGPFPIIV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S4	4	499.3133850097656	2	499.313295	996.612037	0.56338	0.00028131	-0.29824	-0.00014892	0.26514	0.00013239	499.3132382023141	55.792	0.26043	55.48	55.35	55.61	-0.312					7	4	2	0	0	0	0.51829	1	20926	20926		15.847	1.2655	1	2771700		+	37243	549	23904	24027	35834	35834					0.1135953144485029
VRGPFPIIV	9	Unmodified	_VRGPFPIIV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MATCH	HCT116MG_D190212_S2	2		2	499.313295	996.612037	0.44502	0.00022221	-0.23887	-0.00011927	0.20615	0.00010293	499.31319562119756	55.694	0.20717	55.509	55.38	55.587	-0.18565	-0.0023148	1.2503E-05	NaN	26.884	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12885000		+	37244	549	23904	24027							0.1135953144485029
VRGSTGGI	8	Unmodified	_VRGSTGGI_					0	0	0			REV__nc|ENSG00000132549|Q7Z7G8-3|VPS13B	REV__nc|ENSG00000132549|Q7Z7G8-3|VPS13B	MULTI-MSMS	HCT116MG_D190212_S3	3	373.7117919921875	2	373.711402	745.408252	0.09339	3.4901E-05	2.0084	0.00075058	2.1018	0.00078548	373.7118812286579	53.323	0.57508	53.02	52.721	53.296	-0.30304					15	10	2	0	0	0	0.86388	1	20150	20150		2.8892	0	1	1814100	+		37245	11996	23905	24028	35835	35835					0.02536387003397067
VRGSTGGI	8	Unmodified	_VRGSTGGI_					0	0	0			REV__nc|ENSG00000132549|Q7Z7G8-3|VPS13B	REV__nc|ENSG00000132549|Q7Z7G8-3|VPS13B	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	373.711402	745.408252	0.09339	3.4901E-05	2.0084	0.00075058	2.1018	0.00078548	373.7118812286579	53.323	0.57508	53.02	52.721	53.296	-0.30304	0.024767	0.00031476	NaN	2.8892	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1814100	+		37246	11996	23905	24028							0.02536387003397067
VRGSTGGI	8	Unmodified	_VRGSTGGI_					0	0	0			REV__nc|ENSG00000132549|Q7Z7G8-3|VPS13B	REV__nc|ENSG00000132549|Q7Z7G8-3|VPS13B	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	373.711402	745.408252	0.060713	2.2689E-05	1.5349	0.00057362	1.5956	0.00059631	373.7119466794106	53.305	0.52115	52.97	52.722	53.244	-0.33473	-0.024767	-3.9145E-05	NaN	2.8892	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2088700	+		37247	11996	23905	24028							0.02536387003397067
VRHHKRVVKLY	11	Unmodified	_VRHHKRVVKLY_					0	0	0			REV__nc|ENSG00000130768|Q92485-2|SMPDL3B	REV__nc|ENSG00000130768|Q92485-2|SMPDL3B	MSMS	HCT116MG_D190212_S2	2	717.9454345703125	2	717.943862	1433.87317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.627	1	61.484	60.984	61.984	-0.14227								0	0	0	0.96149	1	23873	23873		0.30703	0	1				37248	11938	23906	24029	35836	35836					0.17358911144583544
VRHQRKSM	8	Unmodified	_VRHQRKSM_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MSMS	HCT116MG_D190212_S4	4	521.2916870117188	2	521.290359	1040.56617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.952	1	54.634	54.134	55.134	-0.31774								0	0	0	0.8837	1	20562	20562		2.0598	0	1		+		37249	13124	23907	24030	35837	35837					0.047505629909665004
VRIVLAIRA	9	Unmodified	_VRIVLAIRA_					0	0	0		L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|320|3|anti-sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|320|3|anti-sense	L1PA8_dup4178|chr8:94121319-94127043:-|4.057818296907117|0.2856926403965029|3.83|481.0|320|3|anti-sense	MULTI-MSMS	HCT116MG_D190212_S2	2	505.8455505371094	2	505.845294	1009.67603	0.49985	0.00025285	-0.088664	-4.485E-05	0.41119	0.000208	505.8451402562662	60.88	1.5049	60.731	60.476	61.981	-0.14852					41	28	2	0	0	0	0.77568	1	23824	23824		0	0	1	12645000			37250	9286	23908	24031	35838	35838					0.17158311601770038
VRKEPIETL	9	Unmodified	_VRKEPIETL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MSMS	HCT116MG_D190212_S4	4	362.217041015625	3	362.21688	1083.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.147	1	58.87	58.37	59.37	-0.27731								0	0	0	0.76902	1	22251	22251		4.897	0	1				37251	1484	23909	24032	35839	35839					0.09033987540146882
VRKFMLLKK	9	Unmodified	_VRKFMLLKK_					0	0	0			REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	388.25408935546875	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.76	1	43.453	42.953	43.953	-0.30616								0	0	0	0.77018	1	16338	16338		0.26902	0	1		+		37252	10159	23910	24033	35840	35840					0.16760384452322796
VRKFMLLKK	9	Unmodified	_VRKFMLLKK_					0	0	0			REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	388.2542419433594	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.659	1	45.348	44.848	45.848	-0.31094								0	0	0	0.77018	1	17101	17101		0.26902	0	1		+		37253	10159	23910	24033	35841	35841					0.16760384452322796
VRKFMLLKK	9	Unmodified	_VRKFMLLKK_					0	0	0			REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	388.25396728515625	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.043	1	39.663	39.163	40.163	-0.37936								0	0	0	0.77018	1	14677	14677		0.26902	0	1		+		37254	10159	23910	24033	35842	35842					0.16760384452322796
VRKFMLLKK	9	Unmodified	_VRKFMLLKK_					0	0	0			REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	388.2543029785156	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.204	1	40.826	40.326	41.326	-0.37732								0	0	0	0.77018	1	15144	15144		0.26902	0	1		+		37255	10159	23910	24033	35843	35843					0.16760384452322796
VRKFMLLKK	9	Unmodified	_VRKFMLLKK_					0	0	0			REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	388.25372314453125	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.735	1	41.359	40.859	41.859	-0.37637								0	0	0	0.77018	1	15314	15314		0.26902	0	1		+		37256	10159	23910	24033	35844	35844					0.16760384452322796
VRKFMLLKK	9	Unmodified	_VRKFMLLKK_					0	0	0			REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	388.25421142578125	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.576	1	43.201	42.701	43.701	-0.37433								0	0	0	0.77018	1	16022	16022		0.26902	0	1		+		37257	10159	23910	24033	35845	35845					0.16760384452322796
VRKFMLLKK	9	Unmodified	_VRKFMLLKK_					0	0	0			REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	388.67779541015625	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.313	1	45.941	45.441	46.441	-0.37169								0	0	0	0.77018	1	17097	17097		0.26902	0	1		+		37258	10159	23910	24033	35846	35846					0.16760384452322796
VRKFMLLKK	9	Unmodified	_VRKFMLLKK_					0	0	0			REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	388.25384521484375	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.738	1	46.367	45.867	46.867	-0.37134								0	0	0	0.77018	1	17264	17264		0.26902	0	1		+		37259	10159	23910	24033	35847	35847					0.16760384452322796
VRKFMLLKK	9	Unmodified	_VRKFMLLKK_					0	0	0			REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	REV__CEP162|p.Q686Tfs*11|1|0.39|ENSG00000135315|chr6:84174158-84174159|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	388.254150390625	3	388.254612	1161.74201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.897	1	48.532	48.032	49.032	-0.365								0	0	0	0.77018	1	18119	18119		0.26902	0	1		+		37260	10159	23910	24033	35848	35848					0.16760384452322796
VRKHPGTG	8	Unmodified	_VRKHPGTG_					0	0	0		ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant;nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	ADCK1|p.Q416Pfs*27|1|0.38|ENSG00000063761|chr14:77931552-77931553|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	851.4848022460938	1	851.484611	850.477334	0.65626	0.00055879	0.74183	0.00063165	1.3981	0.0011904	851.4850960613945	48.199	0.46633	47.832	47.573	48.039	-0.36727					13	8	2	0	0	0	0.87635	1	17823	17823		0.69038	0	1	6058500			37261	56	23911	24034	35849	35849					0.04611471022963087
VRKIKKKLV	9	Unmodified	_VRKIKKKLV_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	HCT116MG_D190212_S1	1	556.406494140625	2	556.405518	1110.79648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.587	1	61.587	61.087	62.087	0								0	0	0	0.77025	1	23766	23766		0	0	1		+		37262	14245	23912	24035	35850	35850					0.2455171959541076
VRKIKKKLV	9	Unmodified	_VRKIKKKLV_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	HCT116MG_D190212_S1	1	556.406005859375	2	556.405518	1110.79648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.189	1	62.189	61.689	62.689	0								0	0	0	0.77025	1	24009	24009		0	0	1		+		37263	14245	23912	24035	35851	35851					0.2455171959541076
VRKIKKKLV	9	Unmodified	_VRKIKKKLV_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	HCT116MG_D190212_S1	1	556.4052124023438	2	556.405518	1110.79648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.77	1	62.77	62.27	63.27	0								0	0	0	0.77025	1	24244	24244		0	0	1		+		37264	14245	23912	24035	35852	35852					0.2455171959541076
VRKIKKKLV	9	Unmodified	_VRKIKKKLV_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	HCT116MG_D190212_S4	4	556.4058837890625	2	556.405518	1110.79648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.054	1	61.8	61.3	62.3	-0.25457								0	0	0	0.77025	1	23426	23426		0	0	1		+		37265	14245	23912	24035	35853	35853					0.2455171959541076
VRKIKKKLV	9	Unmodified	_VRKIKKKLV_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MSMS	HCT116MG_D190212_S4	4	556.405517578125	2	556.405518	1110.79648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.601	1	62.352	61.852	62.852	-0.24919								0	0	0	0.77025	1	23639	23639		0	0	1		+		37266	14245	23912	24035	35854	35854					0.2455171959541076
VRKIRKLKI	9	Unmodified	_VRKIRKLKI_					0	0	0		tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	tr|U7SH84|U7SH84_FUSNUHeptosyltransferaseIIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02361PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	385.2808532714844	3	385.280037	1152.81828	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.003	1	24.003	23.503	24.503	0								0	0	0	0.77018	1	8574	8574		0.26902	0	1				37267	18301	23913	24036	35855	35855					0.24798524343987083
VRKKIGPC	8	Unmodified	_VRKKIGPC_					0	0	0		SMYD2|p.A23Lfs*84|1|0.59|ENSG00000143499|chr1:214281319-214281319|G/-|frameshift_variant	SMYD2|p.A23Lfs*84|1|0.59|ENSG00000143499|chr1:214281319-214281319|G/-|frameshift_variant	SMYD2|p.A23Lfs*84|1|0.59|ENSG00000143499|chr1:214281319-214281319|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	450.77685546875	2	450.776022	899.537492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.266	1	59.266	58.766	59.766	0								0	0	0	0.8837	1	22842	22842		0.79363	0	1				37268	18179	23914	24037	35856	35856					0.08370445361822476
VRKKIGPC	8	Unmodified	_VRKKIGPC_					0	0	0		SMYD2|p.A23Lfs*84|1|0.59|ENSG00000143499|chr1:214281319-214281319|G/-|frameshift_variant	SMYD2|p.A23Lfs*84|1|0.59|ENSG00000143499|chr1:214281319-214281319|G/-|frameshift_variant	SMYD2|p.A23Lfs*84|1|0.59|ENSG00000143499|chr1:214281319-214281319|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	450.7760925292969	2	450.776022	899.537492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.13	1	61.994	61.494	62.494	-0.13585								0	0	0	0.8837	1	24076	24076		0.79363	0	1				37269	18179	23914	24037	35857	35857					0.08370445361822476
VRKKRKEK	8	Unmodified	_VRKKRKEK_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.S2067Afs*24|1|0.48|ENSG00000177103|chr11:117428472-117428472|G/-|frameshift_variant;DSCAML1|p.P2046Qfs*45|1|0.5|ENSG00000177103|chr11:117428533-117428533|G/-|frameshift_variant;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MSMS	HCT116MG_D190212_S2	2	357.9081726074219	3	357.908492	1070.70365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.14744	1	0.1435	-0.3565	0.6435	-0.0039395								0	0	0	0.8837	1	59	59		0.40072	0	1				37270	732	23915	24038	35858	35858					0.1711221486202703
VRKKTGAI	8	Unmodified	_VRKKTGAI_					0	0	0			REV__ENSG00000140986|ENST00000268661|RPL3L	REV__ENSG00000140986|ENST00000268661|RPL3L	MULTI-MSMS	HCT116MG_D190212_S1	1	872.5656127929688	1	872.567612	871.560336	0.63062	0.00055026	1.3659	0.0011918	1.9965	0.0017421	872.5655637698354	58.68	1.0165	58.68	58.261	59.278	0					49	28	3	0	0	0	0.88026	1	22806	22806		0	0	1	12856000	+		37271	12318	23916	24039	35859	35859					0.11941787750959065
VRKLGVPLLPL	11	Unmodified	_VRKLGVPLLPL_					0	0	0		ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	MSMS	HCT116MG_D190212_S4	4	602.910888671875	2	602.910633	1203.80671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.297	1	48.932	48.432	49.432	-0.365								0	0	0	0.96141	1	18281	18281		0.35063	0	1				37272	5430	23917	24040	35860	35860					0.21296282530011013
VRKLLRRKTLE	11	Unmodified	_VRKLLRRKTLE_					0	0	0		nc|ENSG00000088756|Q9P2N2-3|ARHGAP28;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;nc|ENSG00000088756|Q9P2N2-5|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28	nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MSMS	HCT116MG_D190212_S4	4	706.4658203125	2	706.464627	1410.9147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.59	1	59.312	58.812	59.812	-0.27731								0	0	0	0.96208	1	22428	22428		0	0	1				37273	9396	23918	24041	35861	35861					0.22568047113281864
VRKQLKLFV	9	Unmodified	_VRKQLKLFV_					0	0	0			REV__nc|ENSG00000167306|Q9ULV0-2|MYO5B	REV__nc|ENSG00000167306|Q9ULV0-2|MYO5B	MSMS	HCT116MG_D190212_S2	2	377.5842590332031	3	377.585126	1129.73355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4522	1	9.1971	8.6971	9.6971	-0.25508								0	0	0	0.77018	1	2954	2954		0.26902	0	1		+		37274	13144	23919	24042	35862	35862					0.17387153807339928
VRKRWLPKIK	10	Unmodified	_VRKRWLPKIK_					0	0	0		ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	MSMS	HCT116MG_D190212_S3	3	662.4412841796875	2	662.440424	1322.86629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.387	1	63.172	62.672	63.672	-0.21454								0	0	0	0.96937	1	24196	24196		0.40072	0	1				37275	4023	23920	24043	35863	35863					0.21777598263997788
VRLAKVFMHL	10	Unmodified	_VRLAKVFMHL_					0	0	0			REV__ENST00000375206.6_1_9:100008408-100053768:+|nuORF	REV__ENST00000375206.6_1_9:100008408-100053768:+|nuORF	MSMS	HCT116MG_D190212_S1	1	405.245849609375	3	405.246116	1212.71652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.851	1	46.851	46.351	47.351	0								0	0	0	0.92272	1	17786	17786		6.1918	0	1		+		37276	15213	23921	24044	35864	35864					0.11866909929926805
VRLIHLRLK	9	Unmodified	_VRLIHLRLK_					0	0	0		nc|ENSG00000140995|Q6ZN54-2|DEF8;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8	nc|ENSG00000140995|Q6ZN54-2|DEF8	nc|ENSG00000140995|Q6ZN54-2|DEF8	MSMS	HCT116MG_D190212_S2	2	383.26385498046875	3	383.264387	1146.77133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.613	1	62.484	61.984	62.984	-0.12924								0	0	0	0.77025	1	24271	24271		0	0	1				37277	3699	23922	24045	35865	35865					0.20381664792830634
VRLKPTRKV	9	Unmodified	_VRLKPTRKV_					0	0	0		ENST00000468655.1_1_19:49994004-49994437:+|nuORF	ENST00000468655.1_1_19:49994004-49994437:+|nuORF	ENST00000468655.1_1_19:49994004-49994437:+|nuORF	MSMS	HCT116MG_D190212_S3	3	366.2486877441406	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.651	1	57.377	56.877	57.877	-0.27434								0	0	0	0.77018	1	21914	21914		0.26902	0	1				37278	8131	23923	24046	35866	35866					0.18001385521824886
VRLKRLLVD	9	Unmodified	_VRLKRLLVD_					0	0	0			REV__nc|ENSG00000072952|Q9Y6F6-8|IRAG1	REV__nc|ENSG00000072952|Q9Y6F6-8|IRAG1	MULTI-MSMS	HCT116MG_D190212_S2	2	556.3696899414062	2	556.369133	1110.72371	0.40882	0.00022745	0.22428	0.00012478	0.6331	0.00035224	556.3691389335263	60.119	1.3898	59.964	59.441	60.83	-0.15441					52	26	3	0	0	0	0.76814	1	23129	23129		0.52476	0	1	50034000	+		37279	10784	23924	24047	35867	35867					0.1727796580200902
VRLLRLHIA	9	Unmodified	_VRLLRLHIA_					0	0	0		ENST00000368408.3_1_1:155051524-155058895:+|nuORF	ENST00000368408.3_1_1:155051524-155058895:+|nuORF	ENST00000368408.3_1_1:155051524-155058895:+|nuORF	MSMS	HCT116MG_D190212_S3	3	545.8646240234375	2	545.864018	1089.71348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.936	1	11.992	11.492	12.492	0.055045								0	0	0	0.77019	1	3689	3689		0.52476	0	1				37280	7401	23925	24048	35868	35868					0.1722140286742615
VRLQKKQAER	10	Unmodified	_VRLQKKQAER_					0	0	0		CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;ENSG00000165164|ENST00000378653|CFAP47;CFAP47|p.K734Nfs*6|1|0.13|ENSG00000165164|chrX:35971909-35971909|A/-|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;CFAP47|p.F1567Vfs*4|1|0.31|ENSG00000165164|chrX:36098829-36098830|-/G|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	628.0578002929688	2	628.383303	1254.75205	0.44261	0.00027813	-0.047601	-2.9912E-05	0.395	0.00024821	628.3831840539183	54.397	1.6674	54.074	53.463	55.13	-0.32348					43	31	2	0	0	0	0.88195	1	20094	20094		2.9952	0	1	2278300			37281	416	23926	24049	35869	35869					0.13486663711250912
VRLQKKQAER	10	Unmodified	_VRLQKKQAER_					0	0	0		CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant;CFAP47|p.H2345Afs*15|1|0.09|ENSG00000165164|chrX:36236809-36236810|-/A|frameshift_variant;ENSG00000165164|ENST00000378653|CFAP47;CFAP47|p.K734Nfs*6|1|0.13|ENSG00000165164|chrX:35971909-35971909|A/-|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;CFAP47|p.F1567Vfs*4|1|0.31|ENSG00000165164|chrX:36098829-36098830|-/G|frameshift_variant;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	CFAP47|p.P2326Tfs*34|1|0.26|ENSG00000165164|chrX:36236751-36236752|-/A|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	628.383303	1254.75205	0.79509	0.00049962	-0.99051	-0.00062242	-0.19542	-0.0001228	628.3824074717501	54.393	0.30454	54.393	54.231	54.536	0	0.1597	-0.00080159	NaN	2.9952	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11028000			37282	416	23926	24049							0.13486663711250912
VRLRHRLV	8	Unmodified	_VRLRHRLV_					0	0	0			REV__ENST00000485840.1_1_2:113993107-113994485:-|nuORF	REV__ENST00000485840.1_1_2:113993107-113994485:-|nuORF	MSMS	HCT116MG_D190212_S4	4	350.1751708984375	3	350.233198	1047.67777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.598	1	58.315	57.815	58.815	-0.28305								0	0	0	0.8837	1	22029	22029		0.45834	0	1		+		37283	15985	23927	24050	35870	35870					0.15583365410407168
VRLRHRLV	8	Unmodified	_VRLRHRLV_					0	0	0			REV__ENST00000485840.1_1_2:113993107-113994485:-|nuORF	REV__ENST00000485840.1_1_2:113993107-113994485:-|nuORF	MSMS	HCT116MG_D190212_S4	4	350.27288818359375	3	350.233198	1047.67777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.704	1	58.421	57.921	58.921	-0.28305								0	0	0	0.8837	1	22072	22072		0.45834	0	1		+		37284	15985	23927	24050	35871	35871					0.15583365410407168
VRLRKKKKGL	10	Unmodified	_VRLRKKKKGL_					0	0	0			REV__ENST00000514842.5_1_4:39459094-39460113:-|nuORF	REV__ENST00000514842.5_1_4:39459094-39460113:-|nuORF	MSMS	HCT116MG_D190212_S1	1	409.2923889160156	3	409.290825	1224.85064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.2	1	41.2	40.7	41.7	0								0	0	0	0.97045	1	15507	15507		0.15932	0.064481	1		+		37285	12942	23928	24051	35872	35872					0.2472131174695278
VRLRKKKKGL	10	Unmodified	_VRLRKKKKGL_					0	0	0			REV__ENST00000514842.5_1_4:39459094-39460113:-|nuORF	REV__ENST00000514842.5_1_4:39459094-39460113:-|nuORF	MSMS	HCT116MG_D190212_S1	1	409.2919921875	3	409.290825	1224.85064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.679	1	42.679	42.179	43.179	0								0	0	0	0.96769	1	16104	16104		0.77653	0.27058	1		+		37286	12942	23928	24051	35873	35873					0.2472131174695278
VRLRKKKKGL	10	Unmodified	_VRLRKKKKGL_					0	0	0			REV__ENST00000514842.5_1_4:39459094-39460113:-|nuORF	REV__ENST00000514842.5_1_4:39459094-39460113:-|nuORF	MSMS	HCT116MG_D190212_S2	2	409.2922058105469	3	409.290825	1224.85064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.701	1	40.632	40.132	41.132	-0.069626								0	0	0	0.97045	1	15357	15357		0.15932	0.064481	1		+		37287	12942	23928	24051	35874	35874					0.2472131174695278
VRLRKKKKGL	10	Unmodified	_VRLRKKKKGL_					0	0	0			REV__ENST00000514842.5_1_4:39459094-39460113:-|nuORF	REV__ENST00000514842.5_1_4:39459094-39460113:-|nuORF	MSMS	HCT116MG_D190212_S4	4	409.292236328125	3	409.290825	1224.85064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.616	1	48.249	47.749	48.749	-0.36728								0	0	0	0.97045	1	18011	18011		0.15932	0.01943	1		+		37288	12942	23928	24051	35875	35875					0.2472131174695278
VRLRTGGP	8	Unmodified	_VRLRTGGP_					0	0	0		ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	428.2615661621094	2	428.261594	854.508634	-0.059695	-2.5565E-05	0.1224	5.2419E-05	0.062705	2.6854E-05	428.2615551346063	49.211	0.8623	49.057	48.834	49.696	-0.15405					45	16	4	0	0	0	0.87576	1	18809	18809		0.79363	0	1	890680000			37289	7673	23929	24052	35876	35876					0.07556044057048439
VRLVVRKVQ	9	Unmodified	_VRLVVRKVQ_					0	0	0		ARR3|p.I228Sfs*16|1|0.08|ENSG00000120500|chrX:70277782-70277782|A/-|frameshift_variant;nc|ENSG00000120500|P36575-2|ARR3;ENSG00000120500|ENST00000307959|ARR3	ARR3|p.I228Sfs*16|1|0.08|ENSG00000120500|chrX:70277782-70277782|A/-|frameshift_variant	ARR3|p.I228Sfs*16|1|0.08|ENSG00000120500|chrX:70277782-70277782|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	366.2485656738281	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8958	1	1.8825	1.3825	2.3825	-0.013221								0	0	0	0.77019	1	614	614		0.23584	0	1				37290	192	23930	24053	35877	35877					0.18001385521824886
VRNNVIIVM	9	Unmodified	_VRNNVIIVM_					0	0	0		NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant;ENSG00000151503|ENST00000534548|NCAPD3;NCAPD3|p.V955M|1|0.11|ENSG00000151503|chr11:134177377-134177377|C/T|missense_variant;ENST00000525964.6_1_11:134022841-134052943:-|nuORF	NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant	NCAPD3|p.S1143Ffs*5|1|0.35|ENSG00000151503|chr11:134168141-134168142|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	529.3131103515625	2	529.312969	1056.61138	0.42556	0.00022526	0.34353	0.00018184	0.76909	0.00040709	529.313022895005	46.064	0.25652	45.963	45.812	46.068	-0.1014					7	4	2	0	0	0	0.33687	1	17563	17563		26.884	5.137	1	17786000			37291	4117	23931	24054	35878	35878					0.08534368733512565
VRRIKAAPL	9	Unmodified	_VRRIKAAPL_					0	0	0		ENST00000374012.7_1_20:34359909-34389461:+|nuORF	ENST00000374012.7_1_20:34359909-34389461:+|nuORF	ENST00000374012.7_1_20:34359909-34389461:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.3430786132812	2	512.342918	1022.67128	0.32468	0.00016635	0.22944	0.00011755	0.55412	0.0002839	512.3429512753248	60.636	2.3191	60.487	60.013	62.332	-0.14852					94	44	3	0	0	0	0.76704	1	23861	23861		0.6015	0	1	79418000			37292	7484	23932	24055	35879	35879					0.16085427459029233
VRRLRRLTARE	11	Unmodified	_VRRLRRLTARE_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	HCT116MG_D190212_S2	2	713.9503784179688	2	713.4473	1424.88005	1.0731	0.0007656	0.68011	0.00048522	1.7532	0.0012508	713.4476631342366	59.548	0.4075	59.388	59.285	59.693	-0.16012					15	8	2	0	0	0	0.74191	1	23053	23053		1.1933	0	1	17363000			37293	6051	23933	24056	35880	35880					0.18460224025193384
VRRLSERPV	9	Unmodified	_VRRLSERPV_					0	0	0			REV__ACY3|p.P10S|1|0.32|ENSG00000132744|chr11:67647016-67647016|G/A|missense_variant	REV__ACY3|p.P10S|1|0.32|ENSG00000132744|chr11:67647016-67647016|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	371.2273864746094	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.082	1	32.871	32.371	33.371	-0.21135								0	0	0	0.76793	1	12263	12263		8.1555	5.4203	1		+		37294	9845	23934	24057	35881	35881					0.11127034102696598
VRRPGGLG	8	Unmodified	_VRRPGGLG_					0	0	0			REV__DNAJB2|p.T299Pfs*54|1|0.26|ENSG00000135924|chr2:219284900-219284900|G/-|frameshift_variant	REV__DNAJB2|p.T299Pfs*54|1|0.26|ENSG00000135924|chr2:219284900-219284900|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	811.4904174804688	1	811.489696	810.48242	0.77372	0.00062786	0.30354	0.00024632	1.0773	0.00087419	811.48967985842	48.614	0.92869	48.247	47.935	48.864	-0.36727					69	25	4	0	0	0	0.88026	1	17947	17947		0	0	1	73144000	+		37295	10390	23935	24058	35882	35882					0.06959774885581282
VRRPGGLG	8	Unmodified	_VRRPGGLG_					0	0	0			REV__DNAJB2|p.T299Pfs*54|1|0.26|ENSG00000135924|chr2:219284900-219284900|G/-|frameshift_variant	REV__DNAJB2|p.T299Pfs*54|1|0.26|ENSG00000135924|chr2:219284900-219284900|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	406.24847412109375	2	406.248486	810.48242	-0.011726	-4.7637E-06	0.091556	3.7194E-05	0.07983	3.2431E-05	406.2485168917951	48.621	2.9455	48.254	47.151	50.096	-0.36727					277	73	7	0	0	0	0.88026	1	18143	18143		0	0	1	1184900000	+		37296	10390	23935	24058	35883	35883					0.06959774885581282
VRRPKKVKRRK	11	Unmodified	_VRRPKKVKRRK_					0	0	0		ENSG00000135540|ENST00000343505|NHSL1;NHSL1|p.P932Rfs*70|1|0.13|ENSG00000135540|chr6:138431562-138431562|G/-|frameshift_variant;NHSL1|p.I1199Ffs*26|1|0.44|ENSG00000135540|chr6:138430763-138430763|G/-|frameshift_variant;NHSL1|p.E1312Gfs*27|1|0.12|ENSG00000135540|chr6:138430422-138430423|-/C|frameshift_variant	ENSG00000135540|ENST00000343505|NHSL1	ENSG00000135540|ENST00000343505|NHSL1	MSMS	HCT116MG_D190212_S2	2	484.33441162109375	3	484.335427	1449.98445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.57	1	61.428	60.928	61.928	-0.14227								0	0	0	0.96208	1	23850	23850		0	0	1				37297	3355	23936	24059	35884	35884					0.2774597057250503
VRRPLVKVG	9	Unmodified	_VRRPLVKVG_					0	0	0			REV__ENST00000599893.1_1_19:53284204-53290040:-|nuORF	REV__ENST00000599893.1_1_19:53284204-53290040:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	512.3433837890625	2	512.342918	1022.67128	0.32468	0.00016635	0.22944	0.00011755	0.55412	0.0002839	512.3429512753248	60.636	2.3191	60.487	60.013	62.332	-0.14852					94	44	3	0	0	0	0.77568	1	24102	24102		0	0	1	79418000	+		37298	16743	23937	24060	35885	35885					0.1608542745905197
VRRPPPKPARR	11	Unmodified	_VRRPPPKPARR_					0	0	0			REV__ENST00000472174.6_1_1:44440432-44440534:+|nuORF	REV__ENST00000472174.6_1_1:44440432-44440534:+|nuORF	MSMS	HCT116MG_D190212_S1	1	443.9488830566406	3	443.949461	1328.82655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.025	1	56.025	55.525	56.525	0								0	0	0	0.95743	1	21529	21529		2.4348	0.18206	1		+		37299	15882	23938	24061	35886	35886					0.17529471313287104
VRRQLKRI	8	Unmodified	_VRRQLKRI_					0	0	0		ENSG00000197403|ENST00000641846|OR6N1	ENSG00000197403|ENST00000641846|OR6N1	ENSG00000197403|ENST00000641846|OR6N1	MSMS	HCT116MG_D190212_S1	1	356.9093017578125	3	356.908603	1067.70398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.78	1	10.78	10.28	11.28	0								0	0	0	0.8837	1	3334	3334		0.45834	0	1				37300	6142	23939	24062	35887	35887					0.17283634581895058
VRRRGLLLL	9	Unmodified	_VRRRGLLLL_					0	0	0			REV__ENSG00000238227|ENST00000418388|TMEM250	REV__ENSG00000238227|ENST00000418388|TMEM250	MSMS	HCT116MG_D190212_S2	2	366.24853515625	3	365.92062	1094.74003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.682	1	11.401	10.901	11.901	-0.28186								0	0	0	0.77025	1	3779	3779		0	0	1		+		37301	14341	23940	24063	35888	35888					0.1964509175877538
VRRRKLKMKL	10	Unmodified	_VRRRKLKMKL_					0	0	0			REV__nc|ENSG00000205482|P0DV79|SPDYE18;REV__ENSG00000260097|ENST00000563237|SPDYE6	REV__nc|ENSG00000205482|P0DV79|SPDYE18	MULTI-SECPEP	HCT116MG_D190212_S1	1	1327.658935546875	1	1327.88309	1326.87581	0.79271	0.0010526	0.69314	0.00092041	1.4859	0.001973	1327.8876095552946	35.324	0.25768	35.324	35.114	35.371	0					5	4	2	0	0	0	0.31204	1	13089	13089		0	0	1	7406900	+		37302	13823;13280	23941	24064	35889	35889					0.22545043277909826
VRRRRRAAAA	10	Unmodified	_VRRRRRAAAA_					0	0	0			REV__ENSG00000168267|ENST00000376504|PTF1A	REV__ENSG00000168267|ENST00000376504|PTF1A	MSMS	HCT116MG_D190212_S4	4	394.9188232421875	3	394.918273	1181.73299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.495	1	63.256	62.756	63.756	-0.2389								0	0	0	0.97116	1	23941	23941		0	0	1		+		37303	13192	23942	24065	35890	35890					0.14939171930905104
VRRRRREQRLK	11	Unmodified	_VRRRRREQRLK_					0	0	0		DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	518.664306640625	3	518.329224	1551.96584	0.43203	0.00022393	0.09208	4.7728E-05	0.52411	0.00027166	518.663664099489	55.856	0.40935	55.856	55.658	56.067	0					13	7	2	0	0	0	0.74191	1	21491	21491		0.094841	0.094841	1	8440600			37304	731	23943	24066	35891	35891					0.211938089306841
VRRRRREQRLK	11	Unmodified	_VRRRRREQRLK_					0	0	0		DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant;ENSG00000171587|ENST00000400454|DSCAM	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	DSCAM|p.G1997Afs*3|1|0.1|ENSG00000171587|chr21:40013083-40013083|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	518.3292846679688	3	518.329224	1551.96584	0.36253	0.00018791	-0.46756	-0.00024235	-0.10504	-5.4444E-05	518.3284840724766	55.962	0.41066	55.776	55.587	55.998	-0.18565					18	7	3	0	0	0	0.74191	1	21593	21593		0.50596	0.50596	1	22873000			37305	731	23943	24066	35892	35892					0.211938089306841
VRRRRRPRRRR	11	Unmodified	_VRRRRRPRRRR_					0	0	0			REV__DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant	REV__DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	810.5286254882812	2	810.528147	1619.04174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.491	1	61.231	60.731	61.731	-0.2602								0	0	0	0.96208	1	23199	23199		0	0	1		+		37306	10350	23944	24067	35893	35893					0.2569825062146265
VRRRRRRRLYA	11	Unmodified	_VRRRRRRRLYA_					0	0	0		ENST00000554273.1_1_14:50998823-50999316:-|nuORF	ENST00000554273.1_1_14:50998823-50999316:-|nuORF	ENST00000554273.1_1_14:50998823-50999316:-|nuORF	MSMS	HCT116MG_D190212_S3	3	519.9988403320312	3	519.997697	1556.97126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8477	1	2.8929	2.3929	3.3929	0.045237								0	0	0	0.96208	1	867	867		0	0	1				37307	8777	23945	24068	35894	35894					0.2150553251317433
VRRRRRRRRWK	11	Unmodified	_VRRRRRRRRWK_					0	0	0			REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF	REV__ENST00000303961.8_1_19:41306371-41306464:+|nuORF	MSMS	HCT116MG_D190212_S3	3	561.1013793945312	3	561.027991	1680.06214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.244	1	49.929	49.429	50.429	-0.31525								0	0	0	0.96138	1	18942	18942		0.36667	0.27183	1		+		37308	14804	23946	24069	35895	35895					0.24931421281257826
VRRSSRIKP	9	Unmodified	_VRRSSRIKP_					0	0	0		SCML2|p.S300Kfs*4|1|0.01|ENSG00000102098|chrX:18265635-18265636|-/ATTT|frameshift_variant;ENSG00000102098|ENST00000251900|SCML2	SCML2|p.S300Kfs*4|1|0.01|ENSG00000102098|chrX:18265635-18265636|-/ATTT|frameshift_variant	SCML2|p.S300Kfs*4|1|0.01|ENSG00000102098|chrX:18265635-18265636|-/ATTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	366.9000244140625	3	366.899996	1097.67816	0.026263	9.6359E-06	-0.098311	-3.607E-05	-0.072048	-2.6434E-05	366.8999944845207	24.176	0.20779	23.796	23.666	23.874	-0.38003					6	3	2	0	0	0	0.53593	1	8676	8676		10.151	1.7063	1	15162000			37309	1824	23947	24070	35896	35896					0.13322740339617667
VRRVNAGA	8	Unmodified	_VRRVNAGA_					0	0	0			REV__nc|ENSG00000172752|A8TX70|COL6A5	REV__nc|ENSG00000172752|A8TX70|COL6A5	MULTI-MSMS	HCT116MG_D190212_S1	1	421.7513732910156	2	421.751393	841.488233	0.066831	2.8186E-05	0.2011	8.4812E-05	0.26793	0.000113	421.75137192528496	42.026	1.7447	42.026	40.946	42.69	0					58	33	2	0	0	0	0.86564	1	15980	15980		2.5775	0	1	17133000	+		37310	13401	23948	24071	35897	35897					0.061148733972345326
VRRVNAGA	8	Unmodified	_VRRVNAGA_					0	0	0			REV__nc|ENSG00000172752|A8TX70|COL6A5	REV__nc|ENSG00000172752|A8TX70|COL6A5	MULTI-MSMS	HCT116MG_D190212_S4	4	421.7519226074219	2	421.751393	841.488233	0.17521	7.3893E-05	0.029161	1.2299E-05	0.20437	8.6192E-05	421.7512789793676	42.231	1.4201	41.855	41.215	42.636	-0.37565					60	38	2	0	0	0	0.87576	1	15747	15747		0.79363	0	1	7910700	+		37311	13401	23948	24071	35898	35898					0.061148733972345326
VRSFPLSVS	9	Unmodified	_VRSFPLSVS_					0	0	0		ENST00000493427.1_1_14:74766202-74769587:-|nuORF;ENST00000493752.5_1_14:74766202-74769615:-|nuORF	ENST00000493427.1_1_14:74766202-74769587:-|nuORF	ENST00000493427.1_1_14:74766202-74769587:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	496.3040771484375	2	496.282192	990.549831	0.44758	0.00022212	0.4051	0.00020104	0.85267	0.00042317	496.2825472691154	45.49	0.2077	45.117	44.987	45.195	-0.37266					6	3	2	0	0	0	0.25248	1	16762	16762		11.495	0	1	1921700			37312	8361	23949	24072	35899	35899					0.05417760305874708
VRSGRALA	8	Unmodified	_VRSGRALA_					0	0	0			REV__ENST00000324225.8_1_11:117049569-117049740:+|nuORF	REV__ENST00000324225.8_1_11:117049569-117049740:+|nuORF	MSMS	HCT116MG_D190212_S4	4	415.25341796875	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.465	1	64.23	63.73	64.73	-0.23412								0	0	0	0.8837	1	24260	24260		0.79363	0	1		+		37313	14895	23950	24073	35900	35900					0.07187757539975337
VRSKKRKS	8	Unmodified	_VRSKKRKS_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MSMS	HCT116MG_D190212_S1	1	494.82366943359375	2	494.82235	987.630147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.554	1	11.554	11.054	12.054	0								0	0	0	0.8837	1	3646	3646		0	0	1		+		37314	13961	23951	24074	35901	35901					0.13583666419572182
VRSPGGKGTV	10	Unmodified	_VRSPGGKGTV_					0	0	0		ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant;ADGRV1|p.Y5091Tfs*7|2|0.25|ENSG00000164199|chr5:90810525-90810525|T/-|frameshift_variant;ADGRV1|p.F5465Lfs*13|1|0.26|ENSG00000164199|chr5:90828964-90828964|T/-|frameshift_variant;ADGRV1|p.T5738Pfs*48|1|0.19|ENSG00000164199|chr5:90853288-90853288|A/-|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	ADGRV1|p.L4664Cfs*23|1|0.28|ENSG00000164199|chr5:90789790-90789790|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	479.2771301269531	2	479.277441	956.540328	0.093637	4.4878E-05	0.050613	2.4258E-05	0.14425	6.9136E-05	479.27726350516593	43.394	0.52053	43.394	43.003	43.524	0					10	9	2	0	0	0	0.88195	1	16432	16432		2.9952	0.41776	1	6971200			37315	62	23952	24075	35902	35902					0.06031992020348298
VRSVKRKR	8	Unmodified	_VRSVKRKR_					0	0	0			REV__ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant	REV__ANKRD12|p.I1846*|1|0.43|ENSG00000101745|chr18:9258797-9258797|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	514.8439331054688	2	514.843616	1027.67268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.742	1	10.742	10.242	11.242	0								0	0	0	0.8837	1	3319	3319		0	0	1		+		37316	9939	23953	24076	35903	35903					0.15995061547801015
VRTPGGRV	8	Unmodified	_VRTPGGRV_					0	0	0		COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	421.2555236816406	2	421.253769	840.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.462	1	25.462	24.962	25.962	0								0	0	0	0.8837	1	9160	9160		14.582	0	1				37317	512	23954	24077	35904	35904					0.06635757539993392
VRTPGGRV	8	Unmodified	_VRTPGGRV_					0	0	0		COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant;COL18A1|p.G1307Dfs*17|1|0.45|ENSG00000182871|chr21:45497645-45497645|C/-|frameshift_variant;COL18A1|p.G1357Afs*86|1|0.1|ENSG00000182871|chr21:45504511-45504520|CGGCCCCCCA/-|frameshift_variant;COL18A1|p.P1436Lfs*10|1|0.19|ENSG00000182871|chr21:45505402-45505402|C/-|frameshift_variant;COL18A1|p.P1408Qfs*38|1|0.53|ENSG00000182871|chr21:45505238-45505238|C/-|frameshift_variant;ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	COL18A1|p.G1307Rfs*9|1|0.65|ENSG00000182871|chr21:45497644-45497645|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	421.25543212890625	2	421.253769	840.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.863	1	27.521	27.021	28.021	-0.34201								0	0	0	0.8837	1	10140	10140		5.2307	0	1				37318	512	23954	24077	35905	35905					0.06635757539993392
VRTPSCPPAGP	11	Unmodified	_VRTPSCPPAGP_					0	0	0		ENST00000397820.4_1_19:10980065-10980326:+|nuORF	ENST00000397820.4_1_19:10980065-10980326:+|nuORF	ENST00000397820.4_1_19:10980065-10980326:+|nuORF	MSMS	HCT116MG_D190212_S1	1	541.2744750976562	2	541.276583	1080.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.191	1	32.191	31.691	32.691	0								0	0	0	0.90571	1	11871	11871		19.257	0	1				37319	7674	23955	24078	35906	35906					0.0015661494005598797
VRTYTRDK	8	Unmodified	_VRTYTRDK_					0	0	0		ENDOU|p.W389R|1|0.17|ENSG00000111405|chr12:47710870-47710870|A/G|missense_variant	ENDOU|p.W389R|1|0.17|ENSG00000111405|chr12:47710870-47710870|A/G|missense_variant	ENDOU|p.W389R|1|0.17|ENSG00000111405|chr12:47710870-47710870|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	519.787841796875	2	519.788173	1037.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.813	1	23.555	23.055	24.055	-0.25816								0	0	0	0.85575	1	8357	8357		18.146	5.9057	1				37320	779	23956	24079	35907	35907					0.04451377049053917
VRVAKALM	8	Unmodified	_VRVAKALM_					0	0	0			REV__ENST00000383773.8_1_3:23997560-24001213:+|nuORF	REV__ENST00000383773.8_1_3:23997560-24001213:+|nuORF	MSMS	HCT116MG_D190212_S4	4	444.2801513671875	2	444.278398	886.542243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.24	1	46.87	46.37	47.37	-0.37038								0	0	0	0.8837	1	17468	17468		2.5775	0	1		+		37321	15294	23957	24080	35908	35908					0.09443329504574649
VRVKVVTAPA	10	Unmodified	_VRVKVVTAPA_					0	0	0		MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant;ENSG00000101825|ENST00000217939|MXRA5	MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MXRA5|p.Q2683Kfs*44|1|0.34|ENSG00000101825|chrX:3310156-3310156|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	520.3327026367188	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.818	1	54.63	54.13	55.13	-0.18797								0	0	0	0.92272	1	21115	21115		10.824	4.1008	1				37322	1808	23958	24081	35909	35909					0.13718301502285613
VRVPPLKS	8	Unmodified	_VRVPPLKS_					0	0	0		ENST00000532962.5_1_11:43902517-43902586:+|nuORF	ENST00000532962.5_1_11:43902517-43902586:+|nuORF	ENST00000532962.5_1_11:43902517-43902586:+|nuORF	MSMS	HCT116MG_D190212_S4	4	448.2904052734375	2	448.28982	894.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.236	1	57.947	57.447	58.447	-0.28879								0	0	0	0.8837	1	21882	21882		0.6015	0	1				37323	8642	23959	24082	35910	35910					0.1135867189371993
VRVRPWPPG	9	Unmodified	_VRVRPWPPG_					0	0	0			REV__CATSPERG|p.P884Qfs*18|1|0.48|ENSG00000099338|chr19:38367188-38367188|C/-|frameshift_variant	REV__CATSPERG|p.P884Qfs*18|1|0.48|ENSG00000099338|chr19:38367188-38367188|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	355.21142578125	3	355.210171	1062.60868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.702	1	59.444	58.944	59.944	-0.25832								0	0	0	0.7701	1	22742	22742		0.23584	0.076522	1		+		37324	10099	23960	24083	35911	35911					0.07988281390839802
VRVRVGRQHLL	11	Unmodified	_VRVRVGRQHLL_					0	0	0			REV__ENSG00000179598|ENST00000321560|PLD6	REV__ENSG00000179598|ENST00000321560|PLD6	MSMS	HCT116MG_D190212_S1	1	444.9494934082031	3	444.94935	1331.82622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8557	1	1.8557	1.3557	2.3557	0								0	0	0	0.96208	1	562	562		0	0	1		+		37325	13644	23961	24084	35912	35912					0.1735805159348729
VRVRVGRQHLL	11	Unmodified	_VRVRVGRQHLL_					0	0	0			REV__ENSG00000179598|ENST00000321560|PLD6	REV__ENSG00000179598|ENST00000321560|PLD6	MSMS	HCT116MG_D190212_S1	1	444.9496765136719	3	444.94935	1331.82622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.1377	1	4.1377	3.6377	4.6377	0								0	0	0	0.96208	1	1238	1238		0	0	1		+		37326	13644	23961	24084	35913	35913					0.1735805159348729
VRVRVGRQHLL	11	Unmodified	_VRVRVGRQHLL_					0	0	0			REV__ENSG00000179598|ENST00000321560|PLD6	REV__ENSG00000179598|ENST00000321560|PLD6	MSMS	HCT116MG_D190212_S1	1	444.949462890625	3	444.94935	1331.82622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4773	1	7.4773	6.9773	7.9773	0								0	0	0	0.96208	1	2260	2260		0	0	1		+		37327	13644	23961	24084	35914	35914					0.1735805159348729
VRVVRLGSR	9	Unmodified	_VRVVRLGSR_					0	0	0			REV__SPR|p.A56T|1|0.42|ENSG00000116096|chr2:72887598-72887598|G/A|missense_variant	REV__SPR|p.A56T|1|0.42|ENSG00000116096|chr2:72887598-72887598|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	521.42041015625	2	521.335624	1040.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.762	1	62.515	62.015	63.015	-0.24629								0	0	0	0.77025	1	23700	23700		0	0	1		+		37328	11571	23962	24085	35915	35915					0.13799355310902683
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	521.9854736328125	3	521.985407	1562.93439	0.49268	0.00025717	0.10442	5.4505E-05	0.5971	0.00031168	521.9853511022901	54.562	2.8636	54.562	52.999	55.862	0					174	55	6	0	0	0	0.74191	4	20718	20718;20803;20948;21181		0	0	1	1249500000			37329	3407	23963	24086	35916;35917;35918;35919	35916					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	782.4751586914062	2	782.474472	1562.93439	0.93807	0.00073402	-0.051646	-4.0412E-05	0.88642	0.0006936	782.4742592898097	54.561	2.8117	54.561	53.771	56.583	0					173	54	5	0	0	0	0.74191	5	20802	20802;20808;20902;20969;21202		0	0	1	2259500000			37330	3407	23963	24086	35920;35921;35922;35923;35924	35920					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	782.4750366210938	2	782.474472	1562.93439	0.92675	0.00072516	-0.044451	-3.4782E-05	0.8823	0.00069037	782.4742863114448	55.182	2.3088	54.994	53.482	55.791	-0.18797					141	44	5	0	0	0	0.74191	3	20976	20976;21204;21439		0.26902	0.26902	1	783200000			37331	3407	23963	24086	35925;35926;35927	35925					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	521.9854125976562	3	521.985407	1562.93439	0.3493	0.00018233	0.13018	6.7954E-05	0.47949	0.00025029	521.9853776270156	55.182	2	54.994	53.689	55.689	-0.18797					126	38	5	0	0	0	0.74191	2	21267	21267;21427		0	0	1	522390000			37332	3407	23963	24086	35928;35929	35928					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	782.4751586914062	2	782.474472	1562.93439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.503	1	54.208	53.708	54.708	-0.29587								0	0	0	0.9613	1	20654	20654		1.1933	0	1				37333	3407	23963	24086	35930	35930					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENSG00000136270|ENST00000258770|TBRG4	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	TBRG4|p.L492Cfs*9|2|0.32|ENSG00000136270|chr7:45101918-45101918|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	521.9851684570312	3	521.985407	1562.93439	0.45542	0.00023772	-0.081018	-4.229E-05	0.37441	0.00019543	521.9852454640501	55.398	1.4589	55.08	53.989	55.448	-0.31775					62	27	4	0	0	0	0.74191	1	20395	20395		0.073264	0.073264	1	25465000			37334	3407	23963	24086	35931	35931					0.17544099852352701
VSAAYGQNSL	10	Unmodified	_VSAAYGQNSL_					0	0	0		ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	MULTI-MSMS	HCT116MG_D190212_S3	3	1010.4922485351562	1	1009.4949	1008.48762	0.70161	0.00070827	-0.80125	-0.00080886	-0.099649	-0.00010059	1009.4946933857818	25.388	0.72871	25.282	25.1	25.829	-0.10618					22	13	3	0	0	0	0.68623	1	9151	9151		21.537	2.28	1	33909000			37335	4477	23964	24087	35932	35932					-0.016280108331443444
VSAEEALKY	9	Unmodified	_VSAEEALKY_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	HCT116MG_D190212_S2	2	505.2635803222656	2	505.263665	1008.51278	0.42851	0.00021651	-1.2551	-0.00063416	-0.8266	-0.00041765	505.262993052064	35.256	0.25828	35.113	34.932	35.19	-0.14245					8	4	3	0	0	0	0.0045841	1	13145	13145		142.08	67.151	1	100050000			37336	1231	23965	24088	35933	35933					0.008860439694331035
VSAGLLAAGP	10	Unmodified	_VSAGLLAAGP_					0	0	0		ENST00000562663.5_1_19:11526701-11527560:-|nuORF	ENST00000562663.5_1_19:11526701-11527560:-|nuORF	ENST00000562663.5_1_19:11526701-11527560:-|nuORF	MSMS	HCT116MG_D190212_S3	3	428.2498779296875	2	428.25036	854.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.323	1	24.25	23.75	24.75	-0.073734								0	0	0	0.81484	1	8632	8632		26.884	0	1				37337	8828	23966	24089	35934	35934					0.05310399868744753
VSALESGIYV	10	Unmodified	_VSALESGIYV_					0	0	0		ENST00000414457.5_1_10:29772115-29772199:+|nuORF	ENST00000414457.5_1_10:29772115-29772199:+|nuORF	ENST00000414457.5_1_10:29772115-29772199:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	519.2797241210938	2	519.279315	1036.54408	0.63284	0.00032862	0.26493	0.00013757	0.89777	0.00046619	519.2794396873535	47.019	0.25568	46.897	46.718	46.974	-0.12175					6	4	2	0	0	0	0.28012	1	17937	17937		52.268	0.63854	1	29983000			37338	7747	23967	24090	35935	35935					0.027266170035318282
VSALESMCKEL	11	Unmodified	_VSALESMCKEL_					0	0	0		nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;GTF2IRD2|p.F606Sfs*8|1|0.44|ENSG00000196275|chr7:74797697-74797697|G/-|frameshift_variant;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2	nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	MULTI-MSMS	HCT116MG_D190212_S4	4	605.7984619140625	2	605.296324	1208.5781	1.1333	0.00068596	-0.13944	-8.4405E-05	0.99381	0.00060155	605.2961350514497	32.731	0.41536	32.351	32.105	32.52	-0.37923					13	7	2	0	0	0	0.72004	1	11905	11905		14.405	3.6059	1	2988200			37339	5329	23968	24091	35936	35936					-0.017850458913699185
VSALESMCKEL	11	Unmodified	_VSALESMCKEL_					0	0	0		nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;GTF2IRD2|p.F606Sfs*8|1|0.44|ENSG00000196275|chr7:74797697-74797697|G/-|frameshift_variant;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-4|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;ENST00000457594.2_7:74237150-74267816:-|nuORF;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2	nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	605.296324	1208.5781	0.67632	0.00040938	0.10004	6.0555E-05	0.77637	0.00046993	605.2964197812533	32.715	0.57317	32.43	31.987	32.56	-0.28511	0.039169	0.0001709	NaN	14.405	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3606300			37340	5329	23968	24091							-0.017850458913699185
VSALLPCTA	9	Unmodified	_VSALLPCTA_					0	0	0		ENST00000471461.5_1_7:72722316-72722787:-|nuORF	ENST00000471461.5_1_7:72722316-72722787:-|nuORF	ENST00000471461.5_1_7:72722316-72722787:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	874.4712524414062	1	874.470266	873.462989	1.1906	0.0010412	0.36642	0.00032043	1.5571	0.0013616	874.4703088654927	47.845	0.20612	47.713	47.584	47.79	-0.13281					6	3	2	0	0	0	0.14972	1	18270	18270		48.346	3.9388	1	18639000			37341	8156	23969	24092	35937	35937					0.02119637759778925
VSALPISVPL	10	Unmodified	_VSALPISVPL_					0	0	0			REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	HCT116MG_D190212_S1	1	498.3117980957031	2	498.310418	994.606283	0.27395	0.00013651	1.8585	0.00092613	2.1325	0.0010626	498.3112986489884	58.008	0.41445	58.008	57.619	58.034	0					9	7	2	0	0	0	0.82332	1	22321	22321		10.074	0	1	23395000	+		37342	17097	23970	24093	35938	35938					0.1087638814251477
VSAQGQSTQLP	11	Unmodified	_VSAQGQSTQLP_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MSMS	HCT116MG_D190212_S2	2	558.2880859375	2	558.288202	1114.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.828	1	20.447	19.947	20.947	-0.38138								0	0	0	0.80071	1	7298	7298		32.786	10.049	1		+		37343	13535	23971	24094	35939	35939					0.00915332258387025
VSASTSLAF	9	Unmodified	_VSASTSLAF_					0	0	0		ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	882.4586181640625	1	882.456724	881.449448	0.90593	0.00079944	-0.058936	-5.2009E-05	0.84699	0.00074743	882.4569865923595	45.167	0.36588	45.075	44.839	45.205	-0.092472					8	6	2	0	0	0	0.13706	1	17204	17204		50.855	2.5092	1	21222000			37344	8357	23972	24095	35940	35940					0.003981032521778616
VSATIQTAGP	10	Unmodified	_VSATIQTAGP_					0	0	0			REV__ENSG00000110900|ENST00000546076|TSPAN11	REV__ENSG00000110900|ENST00000546076|TSPAN11	MSMS	HCT116MG_D190212_S3	3	472.7557678222656	2	472.756007	943.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.142	1	26.014	25.514	26.514	-0.12795								0	0	0	0.69311	1	9365	9365		37.974	5.6685	1		+		37345	11413	23973	24096	35941	35941					0.023451771722420744
VSAVGSQPEPP	11	Unmodified	_VSAVGSQPEPP_					0	0	0		ENST00000430184.1_1_20:61364051-61366679:-|nuORF	ENST00000430184.1_1_20:61364051-61366679:-|nuORF	ENST00000430184.1_1_20:61364051-61366679:-|nuORF	MSMS	HCT116MG_D190212_S2	2	356.5169372558594	3	356.517106	1066.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.042	1	21.657	21.157	22.157	-0.38503								0	0	0	0.92235	1	7789	7789		9.7643	0	1				37346	7846	23974	24097	35942	35942					-0.0011145514461077255
VSAVVYAVE	9	Unmodified	_VSAVVYAVE_					0	0	0		ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	MULTI-MSMS	HCT116MG_D190212_S3	3	468.7556457519531	2	468.755475	935.496398	0.17806	8.3467E-05	-0.44395	-0.0002081	-0.26589	-0.00012464	468.75539429710784	32.403	0.26072	32.124	31.942	32.202	-0.27841					6	4	2	0	0	0	0.43775	1	11870	11870		20.454	2.3186	1	3212100			37347	4149	23975	24098	35943	35943					0.02606962803326951
VSAVVYAVE	9	Unmodified	_VSAVVYAVE_					0	0	0		ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	468.755475	935.496398	0.21213	9.9439E-05	0.36466	0.00017093	0.57679	0.00027037	468.75581824803953	32.277	0.25985	32.047	31.838	32.098	-0.23009	-0.038786	0.00048768	NaN	20.454	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4238700			37348	4149	23975	24098							0.02606962803326951
VSCDTCLSA	9	Carbamidomethyl (C)	_VSCDTC(Carbamidomethyl (C))LSA_	VSC(0.042)DTC(0.958)LSA		VSC(-14)DTC(14)LSA		0	1	0		SPATA2|p.A482T|1|0.3|ENSG00000158480|chr20:49905738-49905738|C/T|missense_variant	SPATA2|p.A482T|1|0.3|ENSG00000158480|chr20:49905738-49905738|C/T|missense_variant	SPATA2|p.A482T|1|0.3|ENSG00000158480|chr20:49905738-49905738|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	955.3868408203125	1	955.385944	954.378667	0.77693	0.00074227	0.17344	0.00016571	0.95038	0.00090798	955.3860279237326	27.559	0.31011	27.217	27.088	27.398	-0.34201					9	5	2	0	0	0	0.19218	1	10018	10018		42.095	6.0504	2	25965000			37349	18225	23976	24099	35944	35944	67				-0.1003468111928214
VSCDTCLSA	9	Carbamidomethyl (C)	_VSCDTC(Carbamidomethyl (C))LSA_	VSC(0.042)DTC(0.958)LSA		VSC(-14)DTC(14)LSA		0	1	0		SPATA2|p.A482T|1|0.3|ENSG00000158480|chr20:49905738-49905738|C/T|missense_variant	SPATA2|p.A482T|1|0.3|ENSG00000158480|chr20:49905738-49905738|C/T|missense_variant	SPATA2|p.A482T|1|0.3|ENSG00000158480|chr20:49905738-49905738|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	955.3873291015625	1	955.385944	954.378667	0.59997	0.00057321	0.33864	0.00032353	0.93861	0.00089674	955.3862071546413	27.651	0.30202	27.33	27.2	27.502	-0.32157					9	5	2	0	0	0	0.19218	1	9913	9913		42.095	6.0504	2	7507900			37350	18225	23976	24099	35945	35945	67				-0.1003468111928214
VSCDTCLSA	9	Carbamidomethyl (C)	_VSCDTC(Carbamidomethyl (C))LSA_					0	1	0		SPATA2|p.A482T|1|0.3|ENSG00000158480|chr20:49905738-49905738|C/T|missense_variant	SPATA2|p.A482T|1|0.3|ENSG00000158480|chr20:49905738-49905738|C/T|missense_variant	SPATA2|p.A482T|1|0.3|ENSG00000158480|chr20:49905738-49905738|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	955.385944	954.378667	0.90449	0.00086414	-0.25088	-0.00023969	0.65361	0.00062445	955.3858151788182	27.523	0.46797	27.335	27.153	27.621	-0.18847	0.041106	-0.00034669	NaN	42.095	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17255000			37351	18225	23976	24099			67				-0.1003468111928214
VSDAKLDKY	9	Unmodified	_VSDAKLDKY_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MSMS	HCT116MG_D190212_S2	2	519.7767944335938	2	519.776939	1037.53933	0.2618	0.00013608	0.065093	3.3834E-05	0.32689	0.00016991	519.7769216125141	23.605	0.20792	23.221	23.091	23.299	-0.38324					5	3	2	0	0	0	0.040372	1	8438	8438		79.427	40.812	1	16602000			37352	4956	23977	24100	35946	35946					0.022057328607616
VSDAKLDKY	9	Unmodified	_VSDAKLDKY_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MATCH	HCT116MG_D190212_S1	1		2	519.776939	1037.53933	0.36594	0.00019021	-0.53564	-0.00027841	-0.1697	-8.8204E-05	519.7766958272725	22.975	0.15598	22.975	22.898	23.054	0	-0.12311	-0.00054677	NaN	79.427	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2729100			37353	4956	23977	24100							0.022057328607616
VSDDGTLHM	9	Unmodified	_VSDDGTLHM_					0	0	0		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	HCT116MG_D190212_S1	1	487.71612548828125	2	487.716024	973.417496	0.29299	0.0001429	0.5156	0.00025146	0.80859	0.00039436	487.71611998437845	32.665	0.20872	32.665	32.482	32.691	0					7	3	3	0	0	0	0.071351	1	12070	12070		64.236	40.216	1	15308000			37354	3704	23978	24101	35947	35947					-0.0702763249327063
VSDDGTLHM	9	Unmodified	_VSDDGTLHM_					0	0	0		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MULTI-MSMS	HCT116MG_D190212_S2	2	487.71612548828125	2	487.716024	973.417496	0.39511	0.0001927	-0.18203	-8.8777E-05	0.21308	0.00010392	487.71600393761673	32.874	0.31095	32.663	32.534	32.845	-0.21135					10	5	3	0	0	0	0.031005	1	12204	12204		85.357	51.254	1	36458000			37355	3704	23978	24101	35948	35948					-0.0702763249327063
VSDDPQVL	8	Unmodified	_VSDDPQVL_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	HCT116MG_D190212_S1	1	872.4387817382812	1	872.435989	871.428712	0.54359	0.00047425	0.8479	0.00073974	1.3915	0.001214	872.4367174220246	36.86	0.25942	36.86	36.679	36.938	0					6	4	2	0	0	0	0.067369	1	13784	13784		104.8	51.224	1	9028400			37356	1024	23979	24102	35949	35949					-0.01214487127481334
VSDDPQVL	8	Unmodified	_VSDDPQVL_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	HCT116MG_D190212_S2	2	872.4369506835938	1	872.435989	871.428712	0.83261	0.0007264	-0.24424	-0.00021309	0.58837	0.00051331	872.4356308078129	36.962	0.30934	36.848	36.653	36.963	-0.11478					10	5	2	0	0	0	0.026439	1	13829	13829		147.83	76.698	1	57913000			37357	1024	23979	24102	35950	35950					-0.01214487127481334
VSDDPQVL	8	Unmodified	_VSDDPQVL_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	HCT116MG_D190212_S3	3	872.4366455078125	1	872.435989	871.428712	0.84223	0.0007348	-0.13326	-0.00011626	0.70897	0.00061853	872.4358078765305	37.134	0.46843	36.832	36.613	37.081	-0.30137					18	8	3	0	0	0	0.0286	1	13733	13733		146.01	41.208	1	28028000			37358	1024	23979	24102	35951	35951					-0.01214487127481334
VSDDPQVL	8	Unmodified	_VSDDPQVL_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	HCT116MG_D190212_S4	4	872.436279296875	1	872.435989	871.428712	0.70518	0.00061522	-0.043462	-3.7917E-05	0.66172	0.00057731	872.4359223214552	37.217	0.34283	36.833	36.685	37.028	-0.3839					12	6	2	0	0	0	0.0286	1	13641	13641		146.01	53.185	1	11350000			37359	1024	23979	24102	35952	35952					-0.01214487127481334
VSDEKLRDYIW	11	Unmodified	_VSDEKLRDYIW_					0	0	0		ENST00000546585.1_1_12:56668545-56668962:-|nuORF;ENST00000546621.5_1_12:56667289-56669828:-|nuORF;ENSG00000062485|ENST00000351328|CS	ENST00000546585.1_1_12:56668545-56668962:-|nuORF	ENST00000546585.1_1_12:56668545-56668962:-|nuORF	MSMS	HCT116MG_D190212_S2	2	712.365478515625	2	712.364441	1422.71433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.333	1	49.179	48.679	49.679	-0.15405								0	0	0	0.9465	1	18877	18877		8.1555	2.4237	1				37360	1121	23980	24103	35953	35953					0.019881079351534936
VSDEKRTEL	9	Unmodified	_VSDEKRTEL_					0	0	0		ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	MSMS	HCT116MG_D190212_S2	2	538.782958984375	2	538.782753	1075.55095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.077	1	20.694	20.194	21.194	-0.38288								0	0	0	0.37224	1	7398	7398		34.932	8.5908	1				37361	809	23981	24104	35954	35954					0.01619929884100202
VSDFEKKTSN	10	Unmodified	_VSDFEKKTSN_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MSMS	HCT116MG_D190212_S3	3	577.7852783203125	2	577.788035	1153.56152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.461	1	26.312	25.812	26.812	-0.14924								0	0	0	0.90291	1	9494	9494		15.248	3.6082	1				37362	2795	23982	24105	35955	35955					-0.00912087461460942
VSDFRKEFY	9	Unmodified	_VSDFRKEFY_					0	0	0		ENST00000491520.5_1_22:19467485-19467677:+|nuORF;CDC45|p.W55Gfs*21|1|0.32|ENSG00000093009|chr22:19481001-19481001|G/-|frameshift_variant;nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	ENST00000491520.5_1_22:19467485-19467677:+|nuORF	ENST00000491520.5_1_22:19467485-19467677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	595.7958374023438	2	595.795663	1189.57677	0.62146	0.00037026	0.14922	8.8907E-05	0.77068	0.00045917	595.7958046986474	37.001	0.25756	36.886	36.705	36.963	-0.11478					7	4	2	0	0	0	0.07468	1	13866	13866		63.227	26.721	1	24675000			37363	8345	23983	24106	35956	35956					-0.010431758736103802
VSDFRKEFY	9	Unmodified	_VSDFRKEFY_					0	0	0		ENST00000491520.5_1_22:19467485-19467677:+|nuORF;CDC45|p.W55Gfs*21|1|0.32|ENSG00000093009|chr22:19481001-19481001|G/-|frameshift_variant;nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	ENST00000491520.5_1_22:19467485-19467677:+|nuORF	ENST00000491520.5_1_22:19467485-19467677:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	595.795663	1189.57677	0.52316	0.00031169	-0.12358	-7.3627E-05	0.39958	0.00023807	595.7955861429342	36.964	0.15591	36.964	36.886	37.042	0	0.039137	-0.00018841	NaN	63.227	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10720000			37364	8345	23983	24106							-0.010431758736103802
VSDHSGFHY	9	Unmodified	_VSDHSGFHY_					0	0	0		PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant;ENSG00000188647|ENST00000340434|PTAR1	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	524.7279052734375	2	524.727781	1047.44101	0.34047	0.00017865	0.26825	0.00014076	0.60871	0.00031941	524.7278437151966	27.152	0.31211	27.152	26.97	27.282	0					11	5	3	0	0	0	0.012596	1	9834	9834		133.7	99.515	1	17968000			37365	5993	23984	24107	35957	35957					-0.08081450664417389
VSDHSGFHY	9	Unmodified	_VSDHSGFHY_					0	0	0		PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant;ENSG00000188647|ENST00000340434|PTAR1	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	350.1541442871094	3	350.154279	1047.44101	-0.1057	-3.701E-05	-0.28067	-9.8278E-05	-0.38637	-0.00013529	350.15415156883614	27.124	0.26003	27.124	26.97	27.23	0					10	4	3	0	0	0	0.22946	1	9842	9842		38.176	27.352	1	9493500			37366	5993	23984	24107	35958	35958					-0.08081450664417389
VSDHSGFHY	9	Unmodified	_VSDHSGFHY_					0	0	0		PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant;ENSG00000188647|ENST00000340434|PTAR1	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	524.7282104492188	2	524.727781	1047.44101	0.46148	0.00024215	-0.12306	-6.4573E-05	0.33842	0.00017758	524.7277305584701	27.668	0.25844	27.326	27.191	27.449	-0.34201					10	4	3	0	0	0	0.0058997	1	10060	10060		162.95	128.76	1	73904000			37367	5993	23984	24107	35959	35959					-0.08081450664417389
VSDHSGFHY	9	Unmodified	_VSDHSGFHY_					0	0	0		PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant;ENSG00000188647|ENST00000340434|PTAR1	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	350.1543884277344	3	350.154279	1047.44101	-0.07143	-2.5011E-05	0.30244	0.0001059	0.23101	8.089E-05	350.1542736809639	27.663	0.25844	27.321	27.191	27.449	-0.34201					10	4	3	0	0	0	0.22946	1	10073	10073		38.176	22.026	1	38123000			37368	5993	23984	24107	35960	35960					-0.08081450664417389
VSDHSGFHY	9	Unmodified	_VSDHSGFHY_					0	0	0		PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant;ENSG00000188647|ENST00000340434|PTAR1	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	PTAR1|p.D254Efs*8|1|0.05|ENSG00000188647|chr9:69723511-69723512|-/ATCTTATTGAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	525.2303466796875	2	524.727781	1047.44101	0.47534	0.00024942	0.41344	0.00021694	0.88878	0.00046637	524.7276014181202	27.419	0.26017	27.25	27.12	27.38	-0.16933					6	4	2	0	0	0	0.37942	1	9921	9921		25.399	9.5521	1	2127700			37369	5993	23984	24107	35961	35961					-0.08081450664417389
VSDLLLAV	8	Unmodified	_VSDLLLAV_					0	0	0		nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	MSMS	HCT116MG_D190212_S1	1	415.2530517578125	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.7	1	52.7	52.2	53.2	0								0	0	0	0.8837	1	20164	20164		5.2307	0	1				37370	2237	23985	24108	35962	35962					0.07456168154271836
VSDNDIRKY	9	Unmodified	_VSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;VCP|p.R745H|1|0.13|ENSG00000165280|chr9:35057457-35057457|C/T|missense_variant;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	HCT116MG_D190212_S1	1	370.52410888671875	3	370.524372	1108.55129	-0.14899	-5.5203E-05	-0.88249	-0.00032698	-1.0315	-0.00038219	370.5239473448726	23.11	0.72948	23.11	22.689	23.418	0					22	11	3	0	0	0	0.24534	1	8246	8246		28.234	13.276	1	37575000			37371	4759	23986	24109	35963	35963					0.001353496039428137
VSDNDIRKY	9	Unmodified	_VSDNDIRKY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;VCP|p.R745H|1|0.13|ENSG00000165280|chr9:35057457-35057457|C/T|missense_variant;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	HCT116MG_D190212_S2	2	370.5240783691406	3	370.524372	1108.55129	-0.22454	-8.3198E-05	-1.1926	-0.0004419	-1.4172	-0.0005251	370.5238468218366	23.605	0.77978	23.222	22.78	23.56	-0.38324					30	14	4	0	0	0	0.061422	1	8445	8445		55.235	34.364	1	100830000			37372	4759	23986	24109	35964	35964					0.001353496039428137
VSDNRSLF	8	Unmodified	_VSDNRSLF_					0	0	0		ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;nc|ENSG00000203710|P17927|CR1;CR1|p.P1583Lfs*44|1|0.22|ENSG00000203710|chr1:207609487-207609487|C/-|frameshift_variant;ENSG00000203710|ENST00000367049|CR1;nc|ENSG00000197721|Q2VPA4-3|CR1L;ENSG00000197721|ENST00000508064|CR1L	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	469.240478515625	2	469.240524	936.466495	0.26237	0.00012311	1.5042	0.00070585	1.7666	0.00082897	469.24023812699653	34.095	0.26111	34.095	33.919	34.181	0					10	4	3	0	0	0	0.23195	1	12652	12652		67.344	0	1	9750600			37373	598	23987	24110	35965	35965					-0.00427976141986619
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	979.43798828125	1	979.436717	978.429441	0.93073	0.00091159	-0.12961	-0.00012694	0.80112	0.00078465	979.436522444883	26.049	0.4668	25.68	25.446	25.913	-0.36914					16	8	3	0	0	0	1.3589E-08	1	9393	9393		232.37	143.47	1	56068000			37374	4841	23988	24111	35966	35966					-0.060636924784148505
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	490.22198486328125	2	490.221997	978.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.064	1	25.697	25.197	26.197	-0.367								0	0	0	0.014652	1	9413	9413		99.755	57.916	1				37375	4841	23988	24111	35967	35967					-0.060636924784148505
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	979.4369506835938	1	979.436717	978.429441	0.8358	0.00081861	-0.47258	-0.00046286	0.36322	0.00035575	979.4362911267388	25.966	0.57361	25.838	25.546	26.12	-0.12795					18	10	3	0	0	0	7.3337E-06	1	9280	9280		215.27	126.37	1	17721000			37376	4841	23988	24111	35968	35968					-0.060636924784148505
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	490.22186279296875	2	490.221997	978.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.04	1	25.912	25.412	26.412	-0.12795								0	0	0	0.16454	1	9324	9324		49.933	20.851	1				37377	4841	23988	24111	35969	35969					-0.060636924784148505
VSDPSSPQY	9	Unmodified	_VSDPSSPQY_					0	0	0		TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant;ENSG00000166340|ENST00000299427|TPP1;ENST00000524903.1_1_11:6639992-6640524:-|nuORF;ENST00000531754.1_1_11:6639992-6640658:-|nuORF;ENST00000428886.6_1_11:6638445-6640631:-|nuORF	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	TPP1|p.I484Sfs*4|1|0.24|ENSG00000166340|chr11:6614968-6614968|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	979.4364013671875	1	979.436717	978.429441	0.56559	0.00055396	-0.54864	-0.00053736	0.016952	1.6604E-05	979.4357935066729	26.109	0.26031	25.819	25.672	25.932	-0.29022					7	4	2	0	0	0	0.0096523	1	9308	9308		114.2	70.343	1	3916800			37378	4841	23988	24111	35970	35970					-0.060636924784148505
VSDPTSAA	8	Unmodified	_VSDPTSAA_					0	0	0		nc|ENSG00000163945|Q2YD98-2|UVSSA;ENSG00000163945|ENST00000389851|UVSSA	nc|ENSG00000163945|Q2YD98-2|UVSSA	nc|ENSG00000163945|Q2YD98-2|UVSSA	MULTI-MSMS	HCT116MG_D190212_S2	2	747.3530883789062	1	747.351925	746.344648	0.98958	0.00073957	0.030787	2.3009E-05	1.0204	0.00076257	747.3520125946219	19.4	0.5204	19.03	18.836	19.356	-0.3695					14	9	2	0	0	0	0.17804	1	6734	6734		77.984	24.409	1	13286000			37379	4652	23989	24112	35971	35971					-0.03867018224389085
VSDPTSGLDF	10	Unmodified	_VSDPTSGLDF_					0	0	0		ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	MULTI-MSMS	HCT116MG_D190212_S3	3	1037.4788818359375	1	1037.47858	1036.47131	0.62333	0.00064669	0.21347	0.00022148	0.83681	0.00086817	1037.4784875943878	48.304	0.20857	47.988	47.879	48.088	-0.31596					6	3	2	0	0	0	0.017298	1	18192	18192		126.57	76.633	1	2512400			37380	6405	23990	24113	35972	35972					-0.04547136789915385
VSDPVGVLY	9	Unmodified	_VSDPVGVLY_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	HCT116MG_D190212_S1	1	948.5042724609375	1	948.503674	947.496398	0.79515	0.0007542	-0.10273	-9.7438E-05	0.69242	0.00065676	948.5034769485123	49.24	0.36208	49.24	49.027	49.389	0					18	6	4	0	0	0	0.013464	1	18747	18747		104.8	47.328	1	134770000			37381	1049	23991	24114	35973	35973					0.020549628033336376
VSDPVGVLY	9	Unmodified	_VSDPVGVLY_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	HCT116MG_D190212_S2	2	948.5050659179688	1	948.503674	947.496398	0.5063	0.00048022	0.00020703	1.9637E-07	0.5065	0.00048042	948.50347734814	49.316	0.60905	49.162	48.985	49.594	-0.15405					33	11	4	0	0	0	0.023611	1	18855	18855		92.822	38.049	1	838870000			37382	1049	23991	24114	35974	35974					0.020549628033336376
VSDPVGVLY	9	Unmodified	_VSDPVGVLY_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	HCT116MG_D190212_S2	2	474.7548828125	2	474.755475	947.496398	0.098291	4.6664E-05	-0.33276	-0.00015798	-0.23447	-0.00011131	474.75517223665355	49.313	0.40556	49.159	49.036	49.441	-0.15405					11	7	2	0	0	0	0.071351	1	18880	18880		64.236	23.788	1	32503000			37383	1049	23991	24114	35975	35975					0.020549628033336376
VSDPVGVLY	9	Unmodified	_VSDPVGVLY_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	HCT116MG_D190212_S3	3	948.5040893554688	1	948.503674	947.496398	0.63715	0.00060434	-0.27621	-0.00026198	0.36094	0.00034236	948.5033142975927	49.626	0.62659	49.31	49.027	49.654	-0.31596					26	11	3	0	0	0	0.013464	1	18654	18654		104.8	52.531	1	117180000			37384	1049	23991	24114	35976	35976					0.020549628033336376
VSDPVGVLY	9	Unmodified	_VSDPVGVLY_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	HCT116MG_D190212_S3	3	474.75531005859375	2	474.755475	947.496398	0.089843	4.2653E-05	-0.29854	-0.00014174	-0.2087	-9.9082E-05	474.75523994874766	49.683	0.26119	49.367	49.132	49.393	-0.31596					7	4	2	0	0	0	0.32162	1	18709	18709		28.487	0	1	4711200			37385	1049	23991	24114	35977	35977					0.020549628033336376
VSDRDRNLMVY	11	Unmodified	_VSDRDRNLMVY_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;ENST00000532725.1_1_8:145619271-145619424:-|nuORF;ENST00000531480.2_1_8:145619271-145619611:-|nuORF	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	684.3403930664062	2	684.340443	1366.66633	0.34449	0.00023575	-0.69795	-0.00047763	-0.35345	-0.00024188	684.3401153660446	35.4	0.24712	35.258	35.139	35.386	-0.14245					6	4	2	0	0	0	0.038273	1	13208	13208		150.18	120.34	1	69482000			37386	594	23992	24115	35978	35978					-0.0023328925656187494
VSDRDRNLMVY	11	Unmodified	_VSDRDRNLMVY_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;ENST00000532725.1_1_8:145619271-145619424:-|nuORF;ENST00000531480.2_1_8:145619271-145619611:-|nuORF	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	456.896728515625	3	456.562721	1366.66633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.431	1	35.289	34.789	35.789	-0.14245								0	0	0	0.83428	1	13216	13216		28.46	14.29	1				37387	594	23992	24115	35979	35979					-0.0023328925656187494
VSDRDRNLMVY	11	Unmodified	_VSDRDRNLMVY_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;ENST00000532725.1_1_8:145619271-145619424:-|nuORF;ENST00000531480.2_1_8:145619271-145619611:-|nuORF	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	456.56146240234375	3	456.562721	1366.66633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.468	1	35.326	34.826	35.826	-0.14245								0	0	0	0.81912	1	13231	13231		30.414	16.195	1				37388	594	23992	24115	35980	35980					-0.0023328925656187494
VSDRDRNLMVY	11	Unmodified	_VSDRDRNLMVY_					0	0	0		CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant;ENSG00000071894|ENST00000616140|CPSF1;ENST00000532725.1_1_8:145619271-145619424:-|nuORF;ENST00000531480.2_1_8:145619271-145619611:-|nuORF	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	CPSF1|p.A1319Pfs*42|2|0.23|ENSG00000071894|chr8:144393943-144393943|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	684.33984375	2	684.340443	1366.66633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.665	1	35.366	34.866	35.866	-0.29922								0	0	0	0.36713	1	13153	13153		70.496	50.081	1				37389	594	23992	24115	35981	35981					-0.0023328925656187494
VSDRVTVLY	9	Unmodified	_VSDRVTVLY_					0	0	0		ENST00000556300.6_1_14:74417008-74425067:+|nuORF;ENST00000557584.5_1_14:74417012-74426158:+|nuORF;nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	526.2932739257812	2	526.292756	1050.57096	0.57966	0.00030507	0.1302	6.8522E-05	0.70986	0.00037359	526.2928819034165	40.511	0.62045	40.442	40.053	40.673	-0.069626					24	11	3	0	0	0	0.05892	1	15281	15281		70.332	28.492	1	74568000			37390	2662	23993	24116	35982	35982					0.04769725614710296
VSDRVTVLY	9	Unmodified	_VSDRVTVLY_					0	0	0		ENST00000556300.6_1_14:74417008-74425067:+|nuORF;ENST00000557584.5_1_14:74417012-74426158:+|nuORF;nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	526.2935791015625	2	526.292756	1050.57096	0.5452	0.00028694	0.44289	0.00023309	0.98809	0.00052002	526.2929735205176	40.751	0.20847	40.45	40.319	40.528	-0.30161					8	3	3	0	0	0	0.082877	1	15141	15141		61.602	27.2	1	10130000			37391	2662	23993	24116	35983	35983					0.04769725614710296
VSDRVTVLY	9	Unmodified	_VSDRVTVLY_					0	0	0		ENST00000556300.6_1_14:74417008-74425067:+|nuORF;ENST00000557584.5_1_14:74417012-74426158:+|nuORF;nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	526.2929077148438	2	526.292756	1050.57096	0.43153	0.00022711	-0.82064	-0.0004319	-0.38911	-0.00020479	526.2929599434497	40.859	0.19566	40.481	40.378	40.574	-0.37761					6	3	2	0	0	0	0.26031	1	15023	15023		34.932	13.185	1	3429200			37392	2662	23993	24116	35984	35984					0.04769725614710296
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S1	1	537.7594604492188	2	537.758746	1073.50294	0.56544	0.00030407	0.26208	0.00014093	0.82752	0.000445	537.7588328518231	30.633	0.3642	30.633	30.451	30.815	0					18	6	4	0	0	0	0.012343	1	11224	11224		107.56	61.864	1	47837000			37393	1349	23994	24117	35985	35985					-0.03087144035930578
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S2	2	537.759033203125	2	537.758746	1073.50294	0.38531	0.0002072	0.048091	2.5861E-05	0.4334	0.00023306	537.7587281088502	30.904	0.36325	30.637	30.456	30.819	-0.26704					24	6	5	0	0	0	0.0052024	1	11362	11362		135.86	82.031	1	378170000			37394	1349	23994	24117	35986	35986					-0.03087144035930578
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S2	2	1074.5111083984375	1	1074.51022	1073.50294	0.3846	0.00041325	0.27851	0.00029927	0.66311	0.00071252	1074.5104685155177	30.869	0.2594	30.602	30.456	30.716	-0.26704					9	4	3	0	0	0	7.5242E-05	1	11382	11382		203.64	138.4	1	33402000			37395	1349	23994	24117	35987	35987					-0.03087144035930578
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7586059570312	2	537.758746	1073.50294	0.36882	0.00019834	0.094363	5.0745E-05	0.46318	0.00024908	537.7586886959133	31.048	0.62648	30.787	30.604	31.231	-0.26071					33	11	6	0	0	0	0.0064513	1	11309	11309		124.95	79.253	1	100890000			37396	1349	23994	24117	35988	35988					-0.03087144035930578
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S4	4	537.7592163085938	2	537.758746	1073.50294	0.37711	0.00020279	0.15358	8.2588E-05	0.53069	0.00028538	537.7587383986189	31.157	0.41301	30.787	30.61	31.023	-0.37026					20	7	4	0	0	0	0.012343	1	11282	11282		107.56	61.864	1	37032000			37397	1349	23994	24117	35989	35989					-0.03087144035930578
VSDSKQFTYY	10	Unmodified	_VSDSKQFTYY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S1	1	619.2908325195312	2	619.290411	1236.56627	0.66032	0.00040893	0.04077	2.5248E-05	0.70109	0.00043418	619.2904211723123	36.019	0.31251	36.019	35.89	36.202	0					12	5	3	0	0	0	0.017881	1	13422	13422		125.18	83.226	1	22566000			37398	1349	23995	24118	35990	35990					-0.04255203318689382
VSDSKQFTYY	10	Unmodified	_VSDSKQFTYY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S2	2	619.291015625	2	619.290411	1236.56627	0.78458	0.00048588	0.3638	0.0002253	1.1484	0.00071118	619.2905976741583	36.07	0.3619	35.942	35.761	36.122	-0.12799					16	6	3	0	0	0	0.019431	1	13502	13502		121.5	88.058	1	41652000			37399	1349	23995	24118	35991	35991					-0.04255203318689382
VSDSKQFTYY	10	Unmodified	_VSDSKQFTYY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	HCT116MG_D190212_S3	3	619.2907104492188	2	619.290411	1236.56627	0.073804	4.5706E-05	0.36411	0.00022549	0.43792	0.0002712	619.2906544670993	36.264	0.15588	35.964	35.886	36.042	-0.30042					4	2	2	0	0	0	0.11595	1	13423	13423		70.929	41.088	1	4361500			37400	1349	23995	24118	35992	35992					-0.04255203318689382
VSDSQGKAHY	10	Unmodified	_VSDSQGKAHY_					0	0	0		ENST00000496575.1_1_22:31289665-31289989:+|nuORF;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	ENST00000496575.1_1_22:31289665-31289989:+|nuORF	ENST00000496575.1_1_22:31289665-31289989:+|nuORF	MSMS	HCT116MG_D190212_S1	1	546.7398071289062	2	546.259445	1090.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.076	1	16.076	15.576	16.576	0								0	0	0	0.045382	1	5386	5386		110.55	44.096	1				37401	5781	23996	24119	35993	35993					-0.037295099471975846
VSDWIKNTEY	10	Unmodified	_VSDWIKNTEY_					0	0	0		nc|ENSG00000085382|Q8IYU2-4|HACE1;ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-2|HACE1;nc|ENSG00000085382|Q8IYU2-3|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	MULTI-MSMS	HCT116MG_D190212_S2	2	627.8040161132812	2	627.803685	1253.59282	0.6739	0.00042308	-0.088715	-5.5695E-05	0.58519	0.00036738	627.8033779870136	40.46	0.25868	40.391	40.261	40.519	-0.069626					8	4	2	0	0	0	0.016452	1	15285	15285		128.57	63.099	1	23238000			37402	1453	23997	24120	35994	35994					-0.023835144273562037
VSDWWEEY	8	Unmodified	_VSDWWEEY_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000205560|Q92523-2|CPT1B;nc|ENSG00000205560|Q92523-4|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B;ENSG00000205560|ENST00000312108|CPT1B	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MSMS	HCT116MG_D190212_S2	2	557.22802734375	2	557.229822	1112.44509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.492	1	26.131	25.631	26.631	-0.36164								0	0	0	0.75335	1	9587	9587		26.341	0.073138	1				37403	2235	23998	24121	35995	35995					-0.10663405961372519
VSDYEDQLRVW	11	Unmodified	_VSDYEDQLRVW_					0	0	0			REV__WARS2|p.S109Afs*15|1|0.26|ENSG00000116874|chr1:119076373-119076373|T/-|frameshift_variant	REV__WARS2|p.S109Afs*15|1|0.26|ENSG00000116874|chr1:119076373-119076373|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	470.56292724609375	3	470.561375	1408.66229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.027	1	48.873	48.373	49.373	-0.15405								0	0	0	0.95113	1	18750	18750		2.6312	0.70373	1		+		37404	11598	23999	24122	35996	35996					-0.02569055478647897
VSDYLRQSY	9	Unmodified	_VSDYLRQSY_					0	0	0		ARID2|p.S218Pfs*74|1|0.26|ENSG00000189079|chr12:45821431-45821431|T/-|frameshift_variant;ARID2|p.L293*|1|0.3|ENSG00000189079|chr12:45836843-45836843|T/-|frameshift_variant;ARID2|p.L370Ffs*18|1|0.33|ENSG00000189079|chr12:45837401-45837402|-/T|frameshift_variant;ARID2|p.Q686Hfs*19|1|0.04|ENSG00000189079|chr12:45850180-45850181|-/TGAAATGACTG|frameshift_variant;ARID2|p.P851Hfs*4|1|0.36|ENSG00000189079|chr12:45850671-45850671|C/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.N1778Ifs*13|1|0.15|ENSG00000189079|chr12:45893686-45893686|A/-|frameshift_variant;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.S218Pfs*74|1|0.26|ENSG00000189079|chr12:45821431-45821431|T/-|frameshift_variant	ARID2|p.S218Pfs*74|1|0.26|ENSG00000189079|chr12:45821431-45821431|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	565.776611328125	2	565.77747	1129.54039	0.40977	0.00023184	0.36968	0.00020915	0.77945	0.00044099	565.7776126178484	33.635	0.52022	33.635	33.452	33.972	0					18	9	4	0	0	0	0.00446	1	12456	12456		143.91	71.987	1	25326000			37405	186	24000	24123	35997	35997					-0.019200527703333137
VSEDSSVTQIY	11	Unmodified	_VSEDSSVTQIY_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	HCT116MG_D190212_S3	3	614.2901611328125	2	614.290608	1226.56666	0.26713	0.00016409	-0.43925	-0.00026983	-0.17213	-0.00010574	614.2902994490142	38.745	0.26057	38.444	38.3	38.561	-0.30137					7	4	2	0	0	0	0.60456	1	14386	14386		34.932	18.783	1	4587900			37406	2613	24001	24124	35998	35998					-0.037558283894895794
VSEDSSVTQIY	11	Unmodified	_VSEDSSVTQIY_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.G196Afs*41|1|0.12|ENSG00000118705|chr20:37204794-37204794|G/-|frameshift_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	614.290608	1226.56666	0.34671	0.00021298	0.77055	0.00047334	1.1173	0.00068632	614.7929079582137	38.52	0.16177	38.436	38.33	38.492	-0.084618	-0.0042768	0.0013313	NaN	34.932	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13116000			37407	2613	24001	24124							-0.037558283894895794
VSEFSMPSSN	10	Unmodified	_VSEFSMPSSN_					0	0	0			REV__ENST00000483307.1_1_1:174969088-174974127:+|nuORF	REV__ENST00000483307.1_1_1:174969088-174974127:+|nuORF	MSMS	HCT116MG_D190212_S3	3	362.1596374511719	3	362.158702	1083.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.781	1	45.47	44.97	45.97	-0.31094								0	0	0	0.95648	1	17151	17151		1.5923	0.11038	1		+		37408	15971	24002	24125	35999	35999					-0.08411380667348567
VSEFSMPSSN	10	Unmodified	_VSEFSMPSSN_					0	0	0			REV__ENST00000483307.1_1_1:174969088-174974127:+|nuORF	REV__ENST00000483307.1_1_1:174969088-174974127:+|nuORF	MSMS	HCT116MG_D190212_S4	4	362.1598205566406	3	362.158702	1083.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.763	1	45.391	44.891	45.891	-0.37206								0	0	0	0.95648	1	16893	16893		1.5923	0.11038	1		+		37409	15971	24002	24125	36000	36000					-0.08411380667348567
VSEGTKAVTKY	11	Unmodified	_VSEGTKAVTKY_					0	0	0		ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000146047|ENST00000274764|H2BC1;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000196890|ENST00000693095|H2BC26;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000196890|ENST00000693095|H2BC26	MSMS	HCT116MG_D190212_S1	1	591.6455078125	2	591.821878	1181.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.536	1	20.536	20.036	21.036	0								0	0	0	0.0004254	1	7182	7182		107.51	65.558	1				37410	3936;2857	24003	24126	36001	36001					0.04565362469338652
VSEGTKAVTKY	11	Unmodified	_VSEGTKAVTKY_					0	0	0		ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000146047|ENST00000274764|H2BC1;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000196890|ENST00000693095|H2BC26;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000196890|ENST00000693095|H2BC26	MULTI-MSMS	HCT116MG_D190212_S2	2	591.8219604492188	2	591.821878	1181.6292	0.57505	0.00034033	-0.075981	-4.4967E-05	0.49907	0.00029536	591.8216007671372	21.164	0.2081	20.781	20.651	20.859	-0.38288					5	3	2	0	0	0	0.15842	1	7459	7459		80.24	47.454	1	10880000			37411	3936;2857	24003	24126	36002	36002					0.04565362469338652
VSEHIWCED	9	Unmodified	_VSEHIWCED_					0	0	0		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;ENST00000462351.5_1_2:220154950-220159983:-|nuORF;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000155093|Q92932-3|PTPRN2	nc|ENSG00000054356|Q16849-3|PTPRN	nc|ENSG00000054356|Q16849-3|PTPRN	MULTI-MSMS	HCT116MG_D190212_S2	2	559.2344970703125	2	559.234581	1116.45461	0.1425	7.9694E-05	-0.57109	-0.00031937	-0.42858	-0.00023968	559.2344074990272	30.559	0.30837	30.274	30.13	30.439	-0.28453					9	5	2	0	0	0	0.41514	1	11257	11257		21.747	6.9084	1	32496000			37412	1071	24004	24127	36003	36003					-0.09895960947505955
VSEHIWCED	9	Unmodified	_VSEHIWCED_					0	0	0		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;ENST00000462351.5_1_2:220154950-220159983:-|nuORF;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000155093|Q92932-3|PTPRN2	nc|ENSG00000054356|Q16849-3|PTPRN	nc|ENSG00000054356|Q16849-3|PTPRN	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	559.234581	1116.45461	0.31265	0.00017484	-0.34359	-0.00019215	-0.030948	-1.7307E-05	559.7357753245242	30.757	0.25764	30.496	30.399	30.656	-0.26071	0.13227	1.5884E-05	NaN	21.747	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3999000			37413	1071	24004	24127							-0.09895960947505955
VSEILYRYPQ	10	Unmodified	_VSEILYRYPQ_					0	0	0			REV__ENSG00000083535|ENST00000326291|PIBF1	REV__ENSG00000083535|ENST00000326291|PIBF1	MSMS	HCT116MG_D190212_S4	4	634.3359375	2	634.337695	1266.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.974	1	17.799	17.299	18.299	-0.17501								0	0	0	0.94339	1	6001	6001		6.2058	0	1		+		37414	10905	24005	24128	36004	36004					0.03817355223281993
VSELKEELK	9	Unmodified	_VSELKEELK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S1	1	537.78271484375	2	537.805697	1073.59684	0.57285	0.00030808	-3.5493	-0.0019088	-2.9765	-0.0016008	538.3042554401683	25.953	0.26117	25.953	25.823	26.084	0					6	4	2	0	0	0	0.37922	1	9326	9326		23.801	7.2352	1	4619000			37415	4179	24006	24129	36005	36005					0.06298575066307421
VSENKNLP	8	Unmodified	_VSENKNLP_					0	0	0		ENSG00000145975|ENST00000274673|FAM217A;FAM217A|p.S76Vfs*23|2|0.27|ENSG00000145975|chr6:4073441-4073441|T/-|frameshift_variant;ENST00000517801.5_1_8:130863079-130874553:-|nuORF;nc|ENSG00000153310|Q9NUQ9-2|CYRIB;ENSG00000153310|ENST00000694912|CYRIB	ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	MULTI-MSMS	HCT116MG_D190212_S3	3	450.7427978515625	2	450.742899	899.471246	0.040346	1.8186E-05	0.13322	6.0048E-05	0.17357	7.8233E-05	450.7428913168634	22.955	1.4987	22.936	22.751	24.25	-0.018869					51	28	2	0	0	0	0.31873	1	8548	8548		57.471	7.5383	1	16303000			37416	3935	24007	24130	36006	36006					0.017489080007635494
VSEQELLRY	9	Unmodified	_VSEQELLRY_					0	0	0		nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-3|PEX6	nc|ENSG00000124587|Q13608-3|PEX6	MULTI-MSMS	HCT116MG_D190212_S2	2	568.8013305664062	2	568.800946	1135.58734	0.41353	0.00023522	-0.13497	-7.6772E-05	0.27856	0.00015844	568.8006994728028	42.075	0.25959	42.006	41.861	42.12	-0.068199					6	4	2	0	0	0	0.011132	1	15936	15936		110.55	55.779	1	22921000			37417	2854	24008	24131	36007	36007					0.024968067808231353
VSERDVYLTY	10	Unmodified	_VSERDVYLTY_					0	0	0		ENST00000472677.1_1_22:50636123-50636456:+|nuORF;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	622.8111572265625	2	622.81151	1243.60847	0.35037	0.00021821	0.014447	8.9975E-06	0.36482	0.00022721	622.8113259509171	40.617	0.20238	40.617	40.487	40.69	0					9	3	3	0	0	0	0.0034649	2	15277	15277;15299		171.46	102.36	1	46361000			37418	5149	24009	24132	36008;36009	36008					-0.0035922791032589885
VSERDVYLTY	10	Unmodified	_VSERDVYLTY_					0	0	0		ENST00000472677.1_1_22:50636123-50636456:+|nuORF;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	622.81201171875	2	622.81151	1243.60847	0.67041	0.00041754	-0.064383	-4.0098E-05	0.60603	0.00037744	622.8113944611556	40.615	0.30873	40.545	40.365	40.673	-0.069626					17	5	4	0	0	0	0.00058548	1	15322	15322		184.36	124.28	1	163690000			37419	5149	24009	24132	36010	36010					-0.0035922791032589885
VSERDVYLTY	10	Unmodified	_VSERDVYLTY_					0	0	0		ENST00000472677.1_1_22:50636123-50636456:+|nuORF;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	ENST00000472677.1_1_22:50636123-50636456:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	622.81151	1243.60847	0.63931	0.00039817	0.094112	5.8614E-05	0.73343	0.00045679	623.3129576380774	40.855	0.20841	40.554	40.423	40.632	-0.30161	-0.018046	0.00013974	NaN	184.36	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2507800			37420	5149	24009	24132							-0.0035922791032589885
VSESHGQLSY	10	Unmodified	_VSESHGQLSY_					0	0	0		ENST00000237841.5_1_12:3950645-3951302:+|nuORF;nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4	ENST00000237841.5_1_12:3950645-3951302:+|nuORF	ENST00000237841.5_1_12:3950645-3951302:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	553.759521484375	2	553.759278	1105.504	0.48642	0.00026936	0.49551	0.00027439	0.98192	0.00054375	553.7593799448765	27.722	0.15613	27.722	27.644	27.8	0					4	2	2	0	0	0	0.45124	1	10101	10101		38.615	7.3464	1	5574500			37421	4674	24010	24133	36011	36011					-0.0445292966701345
VSESHGQLSY	10	Unmodified	_VSESHGQLSY_					0	0	0		ENST00000237841.5_1_12:3950645-3951302:+|nuORF;nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4	ENST00000237841.5_1_12:3950645-3951302:+|nuORF	ENST00000237841.5_1_12:3950645-3951302:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	553.7604370117188	2	553.759278	1105.504	0.35236	0.00019512	0.9389	0.00051992	1.2913	0.00071505	553.7597660348325	28.178	0.25891	27.848	27.719	27.977	-0.32987					7	4	2	0	0	0	0.055088	1	10271	10271		83.429	43.479	1	20993000			37422	4674	24010	24133	36012	36012					-0.0445292966701345
VSEVETVYP	9	Unmodified	_VSEVETVYP_					0	0	0			REV__nc|ENSG00000122224|Q9HBG7-3|LY9	REV__nc|ENSG00000122224|Q9HBG7-3|LY9	MULTI-MSMS	HCT116MG_D190212_S3	3	1023.499755859375	1	1022.50407	1021.49679	0.69988	0.00071563	-3.6479	-0.00373	-2.948	-0.0030143	1023.5009206125283	55.925	0.26131	55.638	55.518	55.779	-0.28773					9	4	3	0	0	0	0.41514	1	21237	21237		21.747	2.4897	1	4587100	+		37423	11732	24011	24134	36013	36013					-0.01309662267465228
VSEVSSLNY	9	Unmodified	_VSEVSSLNY_					0	0	0		RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant;RLF|p.Y1419Ifs*6|1|0.31|ENSG00000117000|chr1:40238952-40238952|T/-|frameshift_variant;RLF|p.V1739Kfs*12|1|0.09|ENSG00000117000|chr1:40239916-40239917|TG/-|frameshift_variant;RLF|p.N1741Ifs*21|1|0.18|ENSG00000117000|chr1:40239919-40239919|A/-|frameshift_variant;ENSG00000117000|ENST00000372771|RLF;RLF|p.H728Tfs*20|1|0.42|ENSG00000117000|chr1:40236880-40236880|T/-|frameshift_variant;RLF|p.L337Wfs*10|1|0.4|ENSG00000117000|chr1:40231574-40231574|T/-|frameshift_variant	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	RLF|p.K1151Sfs*12|1|0.41|ENSG00000117000|chr1:40238150-40238150|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	997.4850463867188	1	997.483667	996.476391	1.0076	0.001005	0.45044	0.0004493	1.458	0.0014543	997.4843334897641	37.357	0.19767	37.357	37.249	37.447	0					6	3	2	0	0	0	0.0063744	1	13970	13970		125.62	51.202	1	8773800			37424	2552	24012	24135	36014	36014					-0.021988329272744522
VSFAERDHLG	10	Unmodified	_VSFAERDHLG_					0	0	0			REV__RAD51AP2|p.K861Ifs*17|1|0.05|ENSG00000214842|chr2:17515831-17515834|TCTT/-|frameshift_variant	REV__RAD51AP2|p.K861Ifs*17|1|0.05|ENSG00000214842|chr2:17515831-17515834|TCTT/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	565.7825317382812	2	565.783087	1129.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.988	1	33.813	33.313	34.313	-0.17512								0	0	0	0.89062	1	12630	12630		17.113	4.0704	1		+		37425	14271	24013	24136	36015	36015					-0.007972306761985237
VSFFGERCAYR	11	Unmodified	_VSFFGERCAYR_					0	0	0			REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant	REV__SUSD1|p.F594Lfs*13|1|0.16|ENSG00000106868|chr9:112063005-112063005|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	667.8198852539062	2	667.819147	1333.62374	0.66514	0.00044419	0.73763	0.00049261	1.4028	0.0009368	668.3214662006947	24.11	0.41667	24.048	23.791	24.207	-0.061447					11	7	2	0	0	0	0.73696	1	8583	8583		8.1555	1.0538	1	4371600	+		37426	11314	24014	24137	36016	36016					-0.02972639594145221
VSFIWQYK	8	Unmodified	_VSFIWQYK_					0	0	0			REV__ENST00000342683.5_1_15:67818879-67818948:+|nuORF	REV__ENST00000342683.5_1_15:67818879-67818948:+|nuORF	MSMS	HCT116MG_D190212_S4	4	536.16552734375	2	535.78711	1069.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.361	1	15.199	14.699	15.699	-0.16173								0	0	0	0.8837	1	4945	4945		2.5775	0	1		+		37427	14985	24015	24138	36017	36017					0.027669483112276794
VSFLLRTRE	9	Unmodified	_VSFLLRTRE_					0	0	0		nc|ENSG00000148204|Q5IJ48-3|CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2;ENSG00000148204|ENST00000373631|CRB2	nc|ENSG00000148204|Q5IJ48-3|CRB2	nc|ENSG00000148204|Q5IJ48-3|CRB2	MSMS	HCT116MG_D190212_S1	1	560.8163452148438	2	560.827298	1119.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.673	1	44.673	44.173	45.173	0								0	0	0	0.76077	1	16906	16906		16.149	0	1				37428	4008	24016	24139	36018	36018					0.08500809634278994
VSFSIITSNR	10	Unmodified	_VSFSIITSNR_					0	0	0			REV__ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant	REV__ROS1|p.N1821Tfs*2|1|0.44|ENSG00000047936|chr6:117326319-117326319|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	562.3067016601562	2	562.308938	1122.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.182	1	33.888	33.388	34.388	-0.29419								0	0	0	0.94339	1	12573	12573		6.2058	0.47393	1		+		37429	10606	24017	24140	36019	36019					0.04692513017721467
VSGAAAAAESE	11	Unmodified	_VSGAAAAAESE_					0	0	0		ENST00000545336.5_1_12:28343406-28379131:+|nuORF;ENST00000539107.5_2_12:28343406-28458716:+|nuORF	ENST00000545336.5_1_12:28343406-28379131:+|nuORF	ENST00000545336.5_1_12:28343406-28379131:+|nuORF	MSMS	HCT116MG_D190212_S4	4	481.7238464355469	2	481.724904	961.435254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.196	1	23.937	23.437	24.437	-0.25816								0	0	0	0.92235	1	8512	8512		17.113	0.1706	1				37430	8681	24018	24141	36020	36020					-0.047005939667656094
VSGAEDAEVLE	11	Unmodified	_VSGAEDAEVLE_					0	0	0			REV__FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant	REV__FGFR3|p.G697Afs*11|1|0.09|ENSG00000068078|chr4:1806600-1806600|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	559.7650146484375	2	559.764226	1117.5139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.007	1	23.945	23.445	24.445	-0.061449								0	0	0	0.93295	1	8504	8504		15.248	2.206	1		+		37431	10734	24019	24142	36021	36021					-0.040157864523280296
VSGAGNFSTK	10	Unmodified	_VSGAGNFSTK_					0	0	0		ENST00000373647.8_1_9:125863860-125863902:+|nuORF	ENST00000373647.8_1_9:125863860-125863902:+|nuORF	ENST00000373647.8_1_9:125863860-125863902:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	485.2352600097656	2	484.245806	966.47706	0.093806	4.5425E-05	0.59613	0.00028868	0.68994	0.0003341	484.24631153211084	27.028	0.46764	26.716	26.379	26.847	-0.3114					15	8	3	0	0	0	0.65652	1	9613	9613		24.021	0	1	13290000			37432	7480	24020	24143	36022	36022					-0.0075199348757450934
VSGAGPGTW	9	Unmodified	_VSGAGPGTW_					0	0	0			REV__nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	REV__nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	MULTI-MSMS	HCT116MG_D190212_S4	4	416.2033386230469	2	416.20341	830.392267	0.13975	5.8163E-05	-0.14437	-6.0089E-05	-0.0046291	-1.9267E-06	416.20324962977907	28.146	0.72803	27.814	27.44	28.168	-0.33138					18	13	2	0	0	0	0.23138	1	10084	10084		37.974	3.8716	1	2618600	+		37433	10908	24021	24144	36023	36023					-0.029713192335179883
VSGAGPGTW	9	Unmodified	_VSGAGPGTW_					0	0	0			REV__nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	REV__nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	416.20341	830.392267	0.13975	5.8163E-05	-0.14437	-6.0089E-05	-0.0046291	-1.9267E-06	416.20324962977907	28.146	0.72803	27.814	27.44	28.168	-0.33138	-0.063722	-2.6853E-05	NaN	37.974	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2618600	+		37434	10908	24021	24144							-0.029713192335179883
VSGAYRQEFGE	11	Unmodified	_VSGAYRQEFGE_					0	0	0		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MSMS	HCT116MG_D190212_S4	4	621.7896118164062	2	621.791109	1241.56767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.182	1	18.007	17.507	18.507	-0.17501								0	0	0	0.94012	1	6085	6085		11.495	0.6952	1				37435	3938	24022	24145	36024	36024					-0.043455692299630755
VSGCRPTWWKS	11	Unmodified	_VSGCRPTWWKS_					0	0	0			REV__ENST00000514252.1_1_4:73984441-73984522:-|nuORF	REV__ENST00000514252.1_1_4:73984441-73984522:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	653.8228149414062	2	653.821689	1305.62883	0.61649	0.00040307	1.0022	0.00065527	1.6187	0.0010583	653.8223908420593	19.352	0.41605	19.412	19.074	19.49	0.05983					11	7	2	0	0	0	0.7298	1	6660	6660		10.8	1.4164	1	2068400	+		37436	16198	24023	24146	36025	36025					-0.011763357315430767
VSGDQKDYRFS	11	Unmodified	_VSGDQKDYRFS_					0	0	0		ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant;nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10	ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant	ABCA10|p.I1054Yfs*16|1|0.22|ENSG00000154263|chr17:69174283-69174284|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	651.3098754882812	2	651.309666	1300.60478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.608	1	23.569	23.069	24.069	-0.03968								0	0	0	0.9465	1	8344	8344		8.1555	2.4237	1				37437	2	24024	24147	36026	36026					-0.03349897684188363
VSGEEARLPP	10	Unmodified	_VSGEEARLPP_					0	0	0		SETD1A|p.L1157Pfs*90|1|0.25|ENSG00000099381|chr16:30979250-30979251|-/C|frameshift_variant;SETD1A|p.S1128Vfs*134|2|0.19|ENSG00000099381|chr16:30979162-30979162|C/-|frameshift_variant;ENSG00000099381|ENST00000262519|SETD1A	SETD1A|p.L1157Pfs*90|1|0.25|ENSG00000099381|chr16:30979250-30979251|-/C|frameshift_variant	SETD1A|p.L1157Pfs*90|1|0.25|ENSG00000099381|chr16:30979250-30979251|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	527.7800903320312	2	527.780013	1053.54547	0.30313	0.00015999	-0.35548	-0.00018762	-0.05235	-2.7629E-05	527.7795713860272	16.594	0.20803	16.679	16.601	16.809	0.085424					6	3	2	0	0	0	0.59961	1	5545	5545		39.95	13.682	1	1959400			37438	1635	24025	24148	36027	36027					0.02084251092287559
VSGEHHHHVPD	11	Unmodified	_VSGEHHHHVPD_					0	0	0		ENSG00000130528|ENST00000252825|HRC;HRC|p.P466Qfs*12|1|0.26|ENSG00000130528|chr19:49153841-49153841|G/-|frameshift_variant;HRC|p.K486Rfs*45|2|0.41|ENSG00000130528|chr19:49153781-49153781|T/-|frameshift_variant	ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	MULTI-MSMS	HCT116MG_D190212_S3	3	625.786376953125	2	625.786693	1249.55883	0.42314	0.00026479	-1.0185	-0.00063739	-0.59541	-0.0003726	625.78551525478	23.44	0.78117	23.401	22.823	23.604	-0.03968					17	14	2	0	0	0	0.68267	1	8255	8255		26.268	14.027	1	4662400			37439	3085	24026	24149	36028	36028					-0.05596498075783529
VSGEHHHHVPD	11	Unmodified	_VSGEHHHHVPD_					0	0	0		ENSG00000130528|ENST00000252825|HRC;HRC|p.P466Qfs*12|1|0.26|ENSG00000130528|chr19:49153841-49153841|G/-|frameshift_variant;HRC|p.K486Rfs*45|2|0.41|ENSG00000130528|chr19:49153781-49153781|T/-|frameshift_variant	ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	MULTI-MSMS	HCT116MG_D190212_S4	4	626.3206176757812	2	625.786693	1249.55883	0.28929	0.00018103	-0.68431	-0.00042823	-0.39503	-0.0002472	626.2876701363074	23.652	0.57208	23.404	23.168	23.74	-0.24775					14	10	2	0	0	0	0.68267	2	8277	8241;8277		26.268	2.4671	1	2969100			37440	3085	24026	24149	36029;36030	36030					-0.05596498075783529
VSGEHHHHVPD	11	Unmodified	_VSGEHHHHVPD_					0	0	0		ENSG00000130528|ENST00000252825|HRC;HRC|p.P466Qfs*12|1|0.26|ENSG00000130528|chr19:49153841-49153841|G/-|frameshift_variant;HRC|p.K486Rfs*45|2|0.41|ENSG00000130528|chr19:49153781-49153781|T/-|frameshift_variant	ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	MULTI-SECPEP	HCT116MG_D190212_S4	4	625.2942504882812	2	625.786693	1249.55883	0.15469	9.6803E-05	-1.5567	-0.00097418	-1.402	-0.00087738	625.7853112248149	23.161	0.57448	22.917	22.649	23.223	-0.24421					16	10	3	0	0	0	0.3506	1	8127	8127		11.495	4.7715	1	3225200			37441	3085	24026	24149	36031	36031					-0.05596498075783529
VSGGAARPL	9	Unmodified	_VSGGAARPL_					0	0	0			REV__nc|ENSG00000211891|P01854|IGHE	REV__nc|ENSG00000211891|P01854|IGHE	MSMS	HCT116MG_D190212_S4	4	414.2401428222656	2	414.240327	826.466101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.908	1	26.596	26.096	27.096	-0.3114								0	0	0	0.74436	1	9608	9608		16.942	1.0951	1		+		37442	17284	24027	24150	36032	36032					0.045926489288035555
VSGGEQVLLHE	11	Unmodified	_VSGGEQVLLHE_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;PPRC1|p.G704Vfs*30|1|0.2|ENSG00000148840|chr10:102140614-102140614|G/-|frameshift_variant	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MSMS	HCT116MG_D190212_S2	2	584.303955078125	2	584.303852	1166.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.132	1	17.776	17.276	18.276	-0.35647								0	0	0	0.92235	1	6214	6214		17.113	3.2068	1				37443	4036	24028	24151	36033	36033					0.01651905292465017
VSGGIVEEYQ	10	Unmodified	_VSGGIVEEYQ_					0	0	0		ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	MSMS	HCT116MG_D190212_S4	4	541.2496948242188	2	540.764029	1079.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.132	1	20.923	20.423	21.423	-0.20959								0	0	0	0.87399	1	7277	7277		19.257	0	1				37444	3579	24029	24152	36034	36034					-0.023071613815318415
VSGGLAAF	8	Unmodified	_VSGGLAAF_					0	0	0		ENST00000378979.8_1_20:5731053-5753582:+|nuORF	ENST00000378979.8_1_20:5731053-5753582:+|nuORF	ENST00000378979.8_1_20:5731053-5753582:+|nuORF	MSMS	HCT116MG_D190212_S2	2	361.19757080078125	2	361.197596	720.38064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.462	1	33.269	32.769	33.769	-0.19297								0	0	0	0.75335	1	12417	12417		26.341	0	1				37445	7548	24030	24153	36035	36035					0.009264837431373962
VSGGLEWDRL	10	Unmodified	_VSGGLEWDRL_					0	0	0		ENST00000371130.7_2_X:123695540-123695663:-|nuORF	ENST00000371130.7_2_X:123695540-123695663:-|nuORF	ENST00000371130.7_2_X:123695540-123695663:-|nuORF	MSMS	HCT116MG_D190212_S4	4	566.2932739257812	2	566.293288	1130.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.281	1	19.094	18.594	19.594	-0.18674								0	0	0	0.90475	1	6529	6529		14.838	1.9657	1				37446	7439	24031	24154	36036	36036					0.011959399836086959
VSGGVRDY	8	Unmodified	_VSGGVRDY_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-MSMS	HCT116MG_D190212_S4	4	426.7140197753906	2	426.714142	851.413731	0.20815	8.8822E-05	-0.11914	-5.0837E-05	0.089018	3.7985E-05	426.7141112470928	21.271	0.46713	21.061	20.708	21.175	-0.20959					15	8	2	0	0	0	0.3916	1	7283	7283		50.855	14.811	1	1741100			37447	1630	24032	24155	36037	36037					-0.01791934204811696
VSGHEPEPSGP	11	Unmodified	_VSGHEPEPSGP_					0	0	0			REV__nc|ENSG00000179262|P54725-2|RAD23A	REV__nc|ENSG00000179262|P54725-2|RAD23A	MULTI-SECPEP	HCT116MG_D190212_S4	4	547.2681274414062	2	546.751453	1091.48835	0.51661	0.00028246	-0.50639	-0.00027687	0.010224	5.5902E-06	547.2526870857251	19.698	0.87413	19.504	18.914	19.788	-0.19368					23	16	2	0	0	0	0.33676	1	6684	6684		8.1555	2.8586	1	1520700	+		37448	13634	24033	24156	36038	36038					-0.05373216184079865
VSGKEKASEQE	11	Unmodified	_VSGKEKASEQE_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MSMS	HCT116MG_D190212_S3	3	596.2962646484375	2	596.296224	1190.5779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.498	1	24.415	23.915	24.915	-0.083694								0	0	0	0.94012	1	8703	8703		11.495	1.4208	1				37449	4083	24034	24157	36039	36039					-0.009770062953748493
VSGLLLSLQ	9	Unmodified	_VSGLLLSLQ_					0	0	0		ENST00000550043.1_1_14:28734339-28734417:+|nuORF	ENST00000550043.1_1_14:28734339-28734417:+|nuORF	ENST00000550043.1_1_14:28734339-28734417:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	465.286865234375	2	465.286943	928.559333	0.093172	4.3352E-05	-0.33641	-0.00015653	-0.24323	-0.00011317	465.28677737576487	55.324	0.26058	55.006	54.875	55.136	-0.31774					6	4	2	0	0	0	0.12994	1	20733	20733		52.268	8.4101	1	20616000			37450	8749	24035	24158	36040	36040					0.09219528591370363
VSGLLMLLLF	10	Unmodified	_VSGLLMLLLF_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	HCT116MG_D190212_S3	3	553.337646484375	2	553.338121	1104.66169	0.56395	0.00031205	-0.17074	-9.4476E-05	0.39321	0.00021758	553.3379876952952	53.387	1.045	53.084	52.564	53.609	-0.30305					43	19	3	0	0	0	0.86862	1	20378	20378		6.2058	1.4498	1	15273000			37451	2924	24036	24159	36041	36041					0.11354478338625995
VSGLPGFSGS	10	Unmodified	_VSGLPGFSGS_					0	0	0		COL4A3|p.I95V|1|0.29|ENSG00000169031|chr2:227244954-227244954|A/G|missense_variant	COL4A3|p.I95V|1|0.29|ENSG00000169031|chr2:227244954-227244954|A/G|missense_variant	COL4A3|p.I95V|1|0.29|ENSG00000169031|chr2:227244954-227244954|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	454.2297668457031	2	454.229625	906.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.108	1	25.98	25.48	26.48	-0.12795								0	0	0	0.91279	1	9352	9352		13.042	0.51092	1				37452	522	24037	24160	36042	36042					-0.01226780890556256
VSGLWRRR	8	Unmodified	_VSGLWRRR_					0	0	0		ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	MULTI-SECPEP	HCT116MG_D190212_S2	2	514.8032836914062	2	515.306867	1028.59918	-0.13164	-6.7836E-05	-3.589	-0.0018495	-3.7207	-0.0019173	515.3050173292805	30.178	0.25785	29.894	29.667	29.925	-0.28453					6	4	2	0	0	0	0.29402	1	11076	11076		7.2892	0	1	22573000			37453	6699	24038	24161	36043	36043					0.08602513105302023
VSGNRPQIL	9	Unmodified	_VSGNRPQIL_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-SECPEP	HCT116MG_D190212_S1	1	492.6348876953125	2	492.285266	982.555979	0.32829	0.00016161	-0.014932	-7.3509E-06	0.31336	0.00015426	492.28511236984997	52.15	0.20702	52.15	52.021	52.228	0					6	3	2	0	0	0	0.26128	1	19905	19905		6.2058	0.47393	1	9654000	+		37454	12743	24039	24162	36044	36044					0.06400278537375925
VSGNRPQIL	9	Unmodified	_VSGNRPQIL_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	492.285266	982.555979	0.343	0.00016885	-2.8307	-0.0013935	-2.4877	-0.0012247	492.28318309432836	52.716	0.25907	52.529	52.347	52.606	-0.18725	0.18943	-0.0023718	NaN	6.2058	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4580500	+		37455	12743	24039	24162							0.06400278537375925
VSGPPVPF	8	Unmodified	_VSGPPVPF_					0	0	0			REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-MSMS	HCT116MG_D190212_S2	2	799.4356689453125	1	799.434867	798.42759	0.6964	0.00055673	-0.12702	-0.00010155	0.56938	0.00045518	799.4344777975425	30.645	0.46495	30.378	30.251	30.716	-0.26704					14	8	3	0	0	0	0.6854	1	11291	11291		24.674	3.8027	1	50368000	+		37456	13583	24040	24163	36045	36045					0.020313432942771215
VSGPVRGP	8	Unmodified	_VSGPVRGP_					0	0	0			REV__ENST00000282701.2_1_4:81952173-81952551:+|nuORF	REV__ENST00000282701.2_1_4:81952173-81952551:+|nuORF	MSMS	HCT116MG_D190212_S4	4	384.7217102050781	2	384.72177	767.428987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.25	1	23.992	23.492	24.492	-0.25816								0	0	0	0.79325	1	8534	8534		23.148	5.0134	1		+		37457	14725	24041	24164	36046	36046					0.035969773830515805
VSGQLQLPQ	9	Unmodified	_VSGQLQLPQ_					0	0	0			REV__nc|ENSG00000183495|Q96L91-3|EP400	REV__nc|ENSG00000183495|Q96L91-3|EP400	MSMS	HCT116MG_D190212_S3	3	485.2717590332031	2	485.271824	968.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.248	1	23.209	22.709	23.709	-0.03968								0	0	0	0.52331	1	8199	8199		27.629	0	1		+		37458	13765	24042	24165	36047	36047					0.0435716992617472
VSGQSSFV	8	Unmodified	_VSGQSSFV_					0	0	0		ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;OCIAD1|p.E233Kfs*4|2|0.22|ENSG00000109180|chr4:48857355-48857355|A/-|frameshift_variant;ENSG00000109180|ENST00000264312|OCIAD1	ENST00000512981.5_1_4:48833247-48854006:+|nuORF	ENST00000512981.5_1_4:48833247-48854006:+|nuORF	MSMS	HCT116MG_D190212_S2	2	405.70306396484375	2	405.703243	809.391933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.113	1	21.728	21.228	22.228	-0.38503								0	0	0	0.34856	1	7817	7817		51.63	7.7715	1				37459	2198	24043	24166	36048	36048					-0.02038738953376651
VSGQYFEVQTF	11	Unmodified	_VSGQYFEVQTF_					0	0	0			REV__ENSG00000156113|ENST00000286628|KCNMA1	REV__ENSG00000156113|ENST00000286628|KCNMA1	MSMS	HCT116MG_D190212_S4	4	652.8102416992188	2	652.81151	1303.60847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.761	1	29.411	28.911	29.911	-0.34921								0	0	0	0.9465	1	10761	10761		8.1555	1.5252	1		+		37460	12718	24044	24167	36049	36049					-0.031192279103379406
VSGRKMEQGY	10	Unmodified	_VSGRKMEQGY_					0	0	0		ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MSMS	HCT116MG_D190212_S1	1	577.7859497070312	2	577.784773	1153.55499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.011	1	22.011	21.511	22.511	0								0	0	0	0.92917	1	7772	7772		9.3831	0.63772	1				37461	8472	24045	24168	36050	36050					-0.015643038938378595
VSGRKMEQGY	10	Unmodified	_VSGRKMEQGY_					0	0	0		ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	577.785400390625	2	577.784773	1153.55499	0.35111	0.00020287	1.3835	0.00079938	1.7346	0.0010022	577.7852426283571	23.345	0.62316	22.96	22.518	23.141	-0.3852					24	11	3	0	0	0	0.71349	1	8222	8222		19.257	3.1079	1	19113000			37462	8472	24045	24168	36051	36051					-0.015643038938378595
VSGRRGRRE	9	Unmodified	_VSGRRGRRE_					0	0	0		ENST00000595108.5_1_19:6733949-6737021:-|nuORF	ENST00000595108.5_1_19:6733949-6737021:-|nuORF	ENST00000595108.5_1_19:6733949-6737021:-|nuORF	MSMS	HCT116MG_D190212_S3	3	358.20684814453125	3	358.2076	1071.60097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.548	1	24.464	23.964	24.964	-0.083694								0	0	0	0.76954	1	8723	8723		2.4985	0	1				37463	9058	24046	24169	36052	36052					0.06803522123277617
VSGRVIYTSP	10	Unmodified	_VSGRVIYTSP_					0	0	0		tr|U7SX97|U7SX97_FUSNUtRNA(guanine-N(1)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmDPE=3SV=1	tr|U7SX97|U7SX97_FUSNUtRNA(guanine-N(1)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmDPE=3SV=1	tr|U7SX97|U7SX97_FUSNUtRNA(guanine-N(1)-)-methyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=trmDPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	539.7985229492188	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.893	1	29.536	29.036	30.036	-0.3571								0	0	0	0.92917	1	10814	10814		9.3831	0.63772	1				37464	18508	24047	24170	36053	36053					0.0461712798901317
VSGRWLLPHLP	11	Unmodified	_VSGRWLLPHLP_					0	0	0			REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	MSMS	HCT116MG_D190212_S1	1	637.871337890625	2	637.87204	1273.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.471	1	33.471	32.971	33.971	0								0	0	0	0.95113	1	12388	12388		5.7319	0	1		+		37465	13190	24048	24171	36054	36054					0.10361064313656243
VSGSDVDVA	9	Unmodified	_VSGSDVDVA_					0	0	0			REV__nc|ENSG00000071054|O95819-4|MAP4K4	REV__nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	HCT116MG_D190212_S4	4	848.3986206054688	1	848.399603	847.392327	0.83518	0.00070857	-0.36017	-0.00030557	0.47501	0.000403	848.3992070292206	25.26	0.78023	24.98	24.642	25.422	-0.27958					32	14	4	0	0	0	0.32162	1	8876	8876		28.487	0	1	56619000	+		37466	10762	24049	24172	36055	36055					-0.03747364024184208
VSGSIRLERLQ	11	Unmodified	_VSGSIRLERLQ_					0	0	0			REV__nc|ENSG00000133317|Q96DT0-4|LGALS12	REV__nc|ENSG00000133317|Q96DT0-4|LGALS12	MSMS	HCT116MG_D190212_S4	4	629.3648071289062	2	629.367318	1256.72008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.399	1	32.02	31.52	32.52	-0.37924								0	0	0	0.9387	1	11799	11799		12.241	6.0349	1		+		37467	12027	24050	24173	36056	36056					0.10199251237463614
VSGSLAYRRRR	11	Unmodified	_VSGSLAYRRRR_					0	0	0			REV__ENST00000570755.1_1_16:3097544-3105874:+|nuORF	REV__ENST00000570755.1_1_16:3097544-3105874:+|nuORF	MSMS	HCT116MG_D190212_S3	3	661.2848510742188	2	660.884001	1319.75345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.175	1	23.135	22.635	23.635	-0.03968								0	0	0	0.9465	1	8169	8169		8.1555	1.9637	1		+		37468	10503	24051	24174	36057	36057					0.10636297800010652
VSGSTSKS	8	Unmodified	_VSGSTSKS_					0	0	0		nc|ENSG00000177338|Q8N7U9-2|LINC00469	nc|ENSG00000177338|Q8N7U9-2|LINC00469	nc|ENSG00000177338|Q8N7U9-2|LINC00469	MULTI-MSMS	HCT116MG_D190212_S2	2	377.1917419433594	2	376.692875	751.371197	-0.22377	-8.4292E-05	-1.0577	-0.00039844	-1.2815	-0.00048273	376.69467157147244	30.957	0.31129	30.69	30.508	30.819	-0.26704					8	5	2	0	0	0	0.81821	1	11417	11417		9.3474	4.1168	1	8707000			37469	9561	24052	24175	36058	36058					-0.014433293330398556
VSGSTSKS	8	Unmodified	_VSGSTSKS_					0	0	0		nc|ENSG00000177338|Q8N7U9-2|LINC00469	nc|ENSG00000177338|Q8N7U9-2|LINC00469	nc|ENSG00000177338|Q8N7U9-2|LINC00469	MSMS	HCT116MG_D190212_S2	2	376.6944885253906	2	376.692875	751.371197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.091	1	30.824	30.324	31.324	-0.26704								0	0	0	0.8837	1	11456	11456		4.3292	1.44	1				37470	9561	24052	24175	36059	36059					-0.014433293330398556
VSGTARTTTTT	11	Unmodified	_VSGTARTTTTT_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MSMS	HCT116MG_D190212_S2	2	548.2159423828125	2	548.28566	1094.55677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.241	1	30.974	30.474	31.474	-0.26704								0	0	0	0.83401	1	11517	11517		28.495	1.2713	1		+		37471	11626	24053	24176	36060	36060					0.013270283957353968
VSGTSFIDEP	10	Unmodified	_VSGTSFIDEP_					0	0	0			REV__ENST00000473340.1_1_1:153941001-153941280:+|nuORF	REV__ENST00000473340.1_1_1:153941001-153941280:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	526.2511596679688	2	526.250754	1050.48696	0.35066	0.00018453	-3.0878	-0.0016249	-2.7371	-0.0014404	526.2508254710857	34.932	0.72706	34.635	34.284	35.011	-0.29707					20	13	2	0	0	0	0.69918	1	12901	12901		20.454	2.3073	1	4017100	+		37472	12397	24054	24177	36061	36061					-0.03626850272848969
VSGVCYQPGPP	11	Unmodified	_VSGVCYQPGPP_					0	0	0			REV__PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant	REV__PCLO|p.K3621Ifs*26|1|0.04|ENSG00000186472|chr7:82949726-82949727|-/CCAGATA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	552.2635498046875	2	552.263142	1102.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.209	1	34.91	34.41	35.41	-0.29922								0	0	0	0.94538	1	12988	12988		8.7454	1.1365	1		+		37473	13885	24055	24178	36062	36062					-0.035424936711251576
VSGVDDLPPPP	11	Unmodified	_VSGVDDLPPPP_					0	0	0		nc|ENSG00000121075|P57082|TBX4;ENSG00000121075|ENST00000644296|TBX4	nc|ENSG00000121075|P57082|TBX4	nc|ENSG00000121075|P57082|TBX4	MULTI-SECPEP	HCT116MG_D190212_S2	2	546.2593383789062	2	546.782222	1091.54989	0.44635	0.00024406	-1.8932	-0.0010352	-1.4469	-0.00079114	546.7813711234558	16.66	0.20806	16.318	16.152	16.36	-0.34183					5	3	2	0	0	0	0.34807	1	5566	5566		8.1555	0	1	3129000			37474	2725	24056	24179	36063	36063					0.007777155151643456
VSGVKPKYNSG	11	Unmodified	_VSGVKPKYNSG_					0	0	0		ENSG00000042088|ENST00000335725|TDP1	ENSG00000042088|ENST00000335725|TDP1	ENSG00000042088|ENST00000335725|TDP1	MSMS	HCT116MG_D190212_S4	4	568.3084716796875	2	568.308938	1134.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.743	1	21.525	21.025	22.025	-0.21832								0	0	0	0.9324	1	7524	7524		24.991	10.153	1				37475	1007	24057	24180	36064	36064					0.04140513017682679
VSGVNTWRDQL	11	Unmodified	_VSGVNTWRDQL_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;ENST00000485212.1_1_10:95084294-95089482:-|nuORF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	HCT116MG_D190212_S3	3	637.82861328125	2	637.828026	1273.6415	0.64152	0.00040918	-0.38344	-0.00024457	0.25808	0.00016461	637.8279668087833	29.267	0.78152	29.045	28.681	29.463	-0.22195					25	14	2	0	0	0	0.71182	1	10611	10611		17.443	3.0373	1	5065200			37476	3534	24058	24181	36065	36065					0.015623989323785281
VSGVNTWRDQL	11	Unmodified	_VSGVNTWRDQL_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;ENST00000485212.1_1_10:95084294-95089482:-|nuORF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	HCT116MG_D190212_S4	4	637.828125	2	637.828026	1273.6415	0.41762	0.00026637	0.14822	9.4539E-05	0.56584	0.00036091	637.8282377625366	29.4	0.8833	29.051	28.566	29.449	-0.34921					31	16	3	0	0	0	0.71182	1	10564	10564		17.443	4.4002	1	4632200			37477	3534	24058	24181	36066	36066					0.015623989323785281
VSGVQHQST	9	Unmodified	_VSGVQHQST_					0	0	0		nc|ENSG00000167711|P08697-2|SERPINF2;ENSG00000167711|ENST00000453066|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-MSMS	HCT116MG_D190212_S3	3	471.7361145019531	2	471.735606	941.456658	0.17603	8.304E-05	0.87426	0.00041242	1.0503	0.00049546	471.73581966119804	19.805	0.52098	19.864	19.49	20.011	0.059828					12	9	2	0	0	0	0.23138	1	6857	6857		37.974	10.345	1	1390700			37478	4949	24059	24182	36067	36067					-0.016411641473723648
VSGVRKKR	8	Unmodified	_VSGVRKKR_					0	0	0			REV__ENST00000393802.6_1_5:171326080-171326947:-|nuORF	REV__ENST00000393802.6_1_5:171326080-171326947:-|nuORF	MSMS	HCT116MG_D190212_S1	1	465.2926330566406	2	465.303793	928.593033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.416	1	15.416	14.916	15.916	0								0	0	0	0.8837	1	5119	5119		13.508	0	1		+		37479	15331	24060	24183	36068	36068					0.1258799487379747
VSGVSPHN	8	Unmodified	_VSGVSPHN_					0	0	0		RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant;ENSG00000183638|ENST00000382483|RP1L1	RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant	RP1L1|p.G2243Rfs*6|1|0.25|ENSG00000183638|chr8:10607371-10607372|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	796.3961791992188	1	796.394793	795.387516	0.6517	0.00051901	0.5367	0.00042742	1.1884	0.00094643	796.3951377327935	22.796	0.3003	22.777	22.595	22.896	-0.018869					7	5	2	0	0	0	0.44484	1	8039	8039		46.021	8.047	1	4943800			37480	5729	24061	24184	36069	36069					-0.01836203376285539
VSGWASLRP	9	Unmodified	_VSGWASLRP_					0	0	0		ENST00000396268.7_1_6:31125270-31125444:-|nuORF	ENST00000396268.7_1_6:31125270-31125444:-|nuORF	ENST00000396268.7_1_6:31125270-31125444:-|nuORF	MSMS	HCT116MG_D190212_S1	1	486.7651672363281	2	486.766709	971.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.52	1	18.52	18.02	19.02	0								0	0	0	0.76575	1	6371	6371		15.847	1.2655	1				37481	7652	24062	24185	36070	36070					0.031966069916279594
VSGWFMRGTP	10	Unmodified	_VSGWFMRGTP_					0	0	0			REV__ENST00000527805.5_1_11:108093509-108093683:+|nuORF	REV__ENST00000527805.5_1_11:108093509-108093683:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	569.2802124023438	2	569.279126	1136.5437	0.45281	0.00025777	1.9098	0.0010872	2.3626	0.001345	569.2799769898879	18.379	0.41693	18.456	18.257	18.674	0.076334					13	7	3	0	0	0	0.33066	1	6243	6243		47.749	2.0088	1	4757400	+		37482	16291	24063	24186	36071	36071					-0.019110811973177988
VSGWFMRGTP	10	Unmodified	_VSGWFMRGTP_					0	0	0			REV__ENST00000527805.5_1_11:108093509-108093683:+|nuORF	REV__ENST00000527805.5_1_11:108093509-108093683:+|nuORF	MSMS	HCT116MG_D190212_S4	4	569.2806396484375	2	569.279126	1136.5437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.671	1	18.49	17.99	18.99	-0.18052								0	0	0	0.65393	1	6282	6282		39.95	3.8227	1		+		37483	16291	24063	24186	36072	36072					-0.019110811973177988
VSGWFMRGTP	10	Unmodified	_VSGWFMRGTP_					0	0	0			REV__ENST00000527805.5_1_11:108093509-108093683:+|nuORF	REV__ENST00000527805.5_1_11:108093509-108093683:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	569.279126	1136.5437	0.29693	0.00016903	2.1372	0.0012167	2.4341	0.0013857	569.2802842762784	19.075	0.26068	18.706	18.575	18.836	-0.3695	0.12509	3.0344E-05	NaN	47.749	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5576800	+		37484	16291	24063	24186							-0.019110811973177988
VSGYELPKLHD	11	Unmodified	_VSGYELPKLHD_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MSMS	HCT116MG_D190212_S4	4	629.3256225585938	2	629.327328	1256.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.993	1	23.734	23.234	24.234	-0.25816								0	0	0	0.93717	1	8430	8430		13.042	2.9685	1		+		37485	12105	24064	24187	36073	36073					0.0220476484360006
VSHLGEEYP	9	Unmodified	_VSHLGEEYP_					0	0	0			REV__FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	REV__FLNA|p.Q1716Sfs*23|2|0.38|ENSG00000196924|chrX:154354896-154354896|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	515.74560546875	2	515.745639	1029.47673	0.070093	3.615E-05	0.71183	0.00036712	0.78192	0.00040327	515.7457359675365	40.023	0.20586	39.721	39.645	39.851	-0.30137					8	4	2	0	0	0	0.49914	1	14817	14817		16.942	3.4344	1	7267800	+		37486	14052	24065	24188	36074	36074					-0.036834132074318404
VSHRARPL	8	Unmodified	_VSHRARPL_					0	0	0		ENST00000599414.1_19:22033997-22034736:-|nuORF	ENST00000599414.1_19:22033997-22034736:-|nuORF	ENST00000599414.1_19:22033997-22034736:-|nuORF	MSMS	HCT116MG_D190212_S4	4	468.2804260253906	2	468.280318	934.546083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.742	1	57.448	56.948	57.948	-0.29465								0	0	0	0.8837	1	21682	21682		2.8892	0	1				37487	9079	24066	24189	36075	36075					0.07619135322647708
VSHRPRAQ	8	Unmodified	_VSHRPRAQ_					0	0	0			REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	REV__KDM5A|p.V1093*|1|0.32|ENSG00000073614|chr12:309905-309905|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	475.2651672363281	2	475.767575	949.520596	0.44392	0.0002112	-2.6161	-0.0012446	-2.1721	-0.0010334	475.7657922464805	26.236	0.52054	25.938	25.508	26.028	-0.29831					11	9	2	0	0	0	0.31855	1	9331	9331		8.5933	0	1	2618600	+		37488	10788	24067	24190	36076	36076					0.04381660800231657
VSHSGPRALPG	11	Unmodified	_VSHSGPRALPG_					0	0	0			REV__ENST00000497693.1_1_9:37428391-37428742:+|nuORF	REV__ENST00000497693.1_1_9:37428391-37428742:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	538.7833251953125	2	539.293622	1076.57269	0.59439	0.00032055	-0.2802	-0.00015111	0.31419	0.00016944	539.293240488556	20.461	0.15628	20.461	20.331	20.488	0					4	2	2	0	0	0	0.35292	1	7146	7146		15.248	6.5031	1	5211000	+		37489	16061	24068	24191	36077	36077					0.03746779423318003
VSIAGRRQ	8	Unmodified	_VSIAGRRQ_					0	0	0			REV__ENST00000501008.2_1_12:92540095-92540353:+|nuORF	REV__ENST00000501008.2_1_12:92540095-92540353:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	443.7645568847656	2	443.764501	885.514448	-0.080821	-3.5865E-05	0.82631	0.00036669	0.74549	0.00033082	443.76472164413593	50.071	0.56694	50.071	49.647	50.214	0					16	10	3	0	0	0	0.85571	1	19088	19088		4.3292	0.73274	1	36426000	+		37490	16113	24069	24192	36078	36078					0.0671114256869032
VSIAGRRQ	8	Unmodified	_VSIAGRRQ_					0	0	0			REV__ENST00000501008.2_1_12:92540095-92540353:+|nuORF	REV__ENST00000501008.2_1_12:92540095-92540353:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	443.7641906738281	2	443.764501	885.514448	0.22706	0.00010076	0.11734	5.2072E-05	0.3444	0.00015283	443.7644339189579	51.02	1.0883	50.665	50.005	51.093	-0.35483					36	20	3	0	0	0	0.85329	1	18958	18958		4.756	0.81161	1	6567000	+		37491	16113	24069	24192	36079	36079					0.0671114256869032
VSIARRVQDPL	11	Unmodified	_VSIARRVQDPL_					0	0	0		nc|ENSG00000068784|Q8N5C6-2|SRBD1;SRBD1|p.T783Ifs*12|1|0.05|ENSG00000068784|chr2:45413279-45413280|-/CCAAA|frameshift_variant;ENSG00000068784|ENST00000263736|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	MSMS	HCT116MG_D190212_S2	2	627.3707885742188	2	627.369861	1252.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.982	1	49.819	49.319	50.319	-0.16369								0	0	0	0.94538	1	19145	19145		8.7454	2.5396	1				37492	1208	24070	24193	36080	36080					0.10891555100101868
VSIVLKPLEMK	11	Unmodified	_VSIVLKPLEMK_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	MULTI-SECPEP	HCT116MG_D190212_S2	2	629.4232177734375	2	628.885967	1255.75738	0.50795	0.00031944	-1.0642	-0.00066928	-0.55629	-0.00034984	629.3868310796455	54.397	0.61343	54.207	54.048	54.661	-0.1894					17	11	2	0	0	0	0.3506	1	21059	21059		21.537	3.3906	1	66651000	+		37493	11650	24071	24194	36081	36081					0.13973206458854293
VSKGIDKV	8	Unmodified	_VSKGIDKV_					0	0	0			REV__tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	REV__tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	423.2581787109375	2	423.258185	844.501818	0.048418	2.0493E-05	0.24249	0.00010264	0.29091	0.00012313	423.2581707079248	21.994	0.20839	21.609	21.531	21.739	-0.38503					8	3	3	0	0	0	0.079196	1	7793	7793		99.799	3.688	1	25499000	+		37494	17943	24072	24195	36082	36082					0.07334686385809164
VSKGIDKV	8	Unmodified	_VSKGIDKV_					0	0	0			REV__tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	REV__tr|U7T3E2|U7T3E2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00397PE=4SV=1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	423.258185	844.501818	0.048418	2.0493E-05	0.24249	0.00010264	0.29091	0.00012313	423.2581707079248	21.994	0.20839	21.609	21.531	21.739	-0.38503	0	0	NaN	99.799	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25499000	+		37495	17943	24072	24195							0.07334686385809164
VSKGKALL	8	Unmodified	_VSKGKALL_					0	0	0			REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	REV__HERV1_I-int_dup2|chr3:34679996-34686397:+|1.0948245018220069|0.0565463038051543|4.28|448.0|41|1|sense	MSMS	HCT116MG_D190212_S2	2	408.2699279785156	2	408.271096	814.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.115	1	46.993	46.493	47.493	-0.12175								0	0	0	0.8837	1	17965	17965		2.8892	0	1		+		37496	16877	24073	24196	36083	36083					0.11295580628075186
VSKKKKKKKRK	11	Unmodified	_VSKKKKKKKRK_					0	0	0		nc|ENSG00000170085|Q8NDZ2-2|SIMC1	nc|ENSG00000170085|Q8NDZ2-2|SIMC1	nc|ENSG00000170085|Q8NDZ2-2|SIMC1	MSMS	HCT116MG_D190212_S1	1	693.4949340820312	2	693.493188	1384.97182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.303	1	31.303	30.803	31.803	0								0	0	0	0.96208	1	11513	11513		0	0	1				37497	9545	24074	24197	36084	36084					0.294735143896105
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.9215087890625	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.38866	1	0.38866	-0.11134	0.88866	0								0	0	0	0.77019	1	127	127		0.23584	0	1		+		37498	13492	24075	24198	36085	36085					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.92120361328125	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.97471	1	0.97471	0.47471	1.4747	0								0	0	0	0.77025	1	289	289		0	0	1		+		37499	13492	24075	24198	36086	36086					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.9214782714844	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.081	1	2.081	1.581	2.581	0								0	0	0	0.77025	1	619	619		0	0	1		+		37500	13492	24075	24198	36087	36087					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.9212646484375	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.5421	1	3.5421	3.0421	4.0421	0								0	0	0	0.77025	1	1056	1056		0	0	1		+		37501	13492	24075	24198	36088	36088					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.92138671875	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8688	1	4.8688	4.3688	5.3688	0								0	0	0	0.77025	1	1469	1469		0	0	1		+		37502	13492	24075	24198	36089	36089					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.9214782714844	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4385	1	5.4385	4.9385	5.9385	0								0	0	0	0.77025	1	1639	1639		0	0	1		+		37503	13492	24075	24198	36090	36090					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.9215087890625	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9758	1	5.9758	5.4758	6.4758	0								0	0	0	0.77025	1	1801	1801		0	0	1		+		37504	13492	24075	24198	36091	36091					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	353.24151611328125	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.0996	1	6.0996	5.5996	6.5996	0								0	0	0	0.77019	1	1836	1836		0.23584	0	1		+		37505	13492	24075	24198	36092	36092					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.9213562011719	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1464	1	7.1464	6.6464	7.6464	0								0	0	0	0.77025	1	2156	2156		0	0	1		+		37506	13492	24075	24198	36093	36093					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.9216003417969	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5009	1	8.5009	8.0009	9.0009	0								0	0	0	0.77025	1	2570	2570		0	0	1		+		37507	13492	24075	24198	36094	36094					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.9212646484375	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0847	1	9.0847	8.5847	9.5847	0								0	0	0	0.77025	1	2749	2749		0	0	1		+		37508	13492	24075	24198	36095	36095					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S1	1	352.9212951660156	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.153	1	10.153	9.653	10.653	0								0	0	0	0.77025	1	3102	3102		0	0	1		+		37509	13492	24075	24198	36096	36096					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S3	3	352.9212951660156	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4301	1	5.4476	4.9476	5.9476	0.017489								0	0	0	0.76995	1	1644	1644		1.0715	0	1		+		37510	13492	24075	24198	36097	36097					0.21740922092863002
VSKLKLKIK	9	Unmodified	_VSKLKLKIK_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MSMS	HCT116MG_D190212_S4	4	352.921142578125	3	352.921627	1055.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7148	1	2.4502	1.9502	2.9502	-0.26456								0	0	0	0.77025	1	831	831		0	0	1		+		37511	13492	24075	24198	36098	36098					0.21740922092863002
VSKLQIGQRIQ	11	Unmodified	_VSKLQIGQRIQ_					0	0	0			REV__ENSG00000106299|ENST00000223023|WASL	REV__ENSG00000106299|ENST00000223023|WASL	MSMS	HCT116MG_D190212_S3	3	635.4363403320312	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.557	1	50.243	49.743	50.743	-0.31381								0	0	0	0.95273	1	19068	19068		4.897	0	1		+		37512	11291	24076	24199	36099	36099					0.13284128134205275
VSKNHAHEHFL	11	Unmodified	_VSKNHAHEHFL_					0	0	0		PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant;ENSG00000146247|ENST00000275034|PHIP	PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant	PHIP|p.R1463Gfs*3|1|0.3|ENSG00000146247|chr6:78946244-78946244|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	659.8359375	2	659.836185	1317.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.758	1	15.758	15.258	16.258	0								0	0	0	0.95581	1	5258	5258		3.2813	0	1				37513	3943	24077	24200	36100	36100					0.011695248891328447
VSKPKLRLR	9	Unmodified	_VSKPKLRLR_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	HCT116MG_D190212_S2	2	366.24859619140625	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.7198	1	0.71354	0.21354	1.2135	-0.00626								0	0	0	0.77025	1	242	242		0	0	1		+		37514	13438	24078	24201	36101	36101					0.1800138552180215
VSKPKLRLR	9	Unmodified	_VSKPKLRLR_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	HCT116MG_D190212_S2	2	366.2485656738281	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2754	1	1.2691	0.76912	1.7691	-0.0062599								0	0	0	0.77025	1	416	416		0	0	1		+		37515	13438	24078	24201	36102	36102					0.1800138552180215
VSKPKLRLR	9	Unmodified	_VSKPKLRLR_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	HCT116MG_D190212_S2	2	366.2484436035156	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1661	1	6.9612	6.4612	7.4612	-0.20493								0	0	0	0.77025	1	2247	2247		0	0	1		+		37516	13438	24078	24201	36103	36103					0.1800138552180215
VSKPKLRLR	9	Unmodified	_VSKPKLRLR_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	HCT116MG_D190212_S2	2	366.2483215332031	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8099	1	7.594	7.094	8.094	-0.21581								0	0	0	0.77025	1	2444	2444		0	0	1		+		37517	13438	24078	24201	36104	36104					0.1800138552180215
VSKPKLRLR	9	Unmodified	_VSKPKLRLR_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	HCT116MG_D190212_S2	2	366.24847412109375	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.2112	1	8.9562	8.4562	9.4562	-0.25508								0	0	0	0.77025	1	2878	2878		0	0	1		+		37518	13438	24078	24201	36105	36105					0.1800138552180215
VSKPKLRLR	9	Unmodified	_VSKPKLRLR_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	HCT116MG_D190212_S2	2	366.248291015625	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.677	1	12.379	11.879	12.879	-0.29721								0	0	0	0.77025	1	4147	4147		0	0	1		+		37519	13438	24078	24201	36106	36106					0.1800138552180215
VSKPKLRLR	9	Unmodified	_VSKPKLRLR_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	HCT116MG_D190212_S2	2	366.24859619140625	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.434	1	63.311	62.811	63.811	-0.12264								0	0	0	0.77025	1	24589	24589		0	0	1		+		37520	13438	24078	24201	36107	36107					0.1800138552180215
VSKPKLRLR	9	Unmodified	_VSKPKLRLR_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	HCT116MG_D190212_S2	2	366.24853515625	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.99	1	63.874	63.374	64.374	-0.11586								0	0	0	0.77025	1	24795	24795		0	0	1		+		37521	13438	24078	24201	36108	36108					0.1800138552180215
VSKPKLRLR	9	Unmodified	_VSKPKLRLR_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MSMS	HCT116MG_D190212_S2	2	366.24871826171875	3	366.248625	1095.72405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.719	1	64.606	64.106	65.106	-0.11256								0	0	0	0.77025	1	25022	25022		0	0	1		+		37522	13438	24078	24201	36109	36109					0.1800138552180215
VSKPNELWACY	11	Unmodified	_VSKPNELWACY_					0	0	0			REV__OGDH|p.L150Wfs*131|1|0.24|ENSG00000105953|chr7:44647686-44647686|C/-|frameshift_variant	REV__OGDH|p.L150Wfs*131|1|0.24|ENSG00000105953|chr7:44647686-44647686|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	655.3162231445312	2	655.315906	1308.61726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.255	1	30.884	30.384	31.384	-0.37026								0	0	0	0.93717	1	11336	11336		13.042	3.6593	1		+		37523	11281	24079	24202	36110	36110					-0.024705775454776813
VSKRPSGVPD	10	Unmodified	_VSKRPSGVPD_					0	0	0		nc|ENSG00000278196|P01709|IGLV2-8;nc|ENSG00000211668|P01706|IGLV2-11	nc|ENSG00000278196|P01709|IGLV2-8	nc|ENSG00000278196|P01709|IGLV2-8	MULTI-MSMS	HCT116MG_D190212_S1	1	1042.56982421875	1	1041.56873	1040.56146	0.95178	0.00099134	-0.38678	-0.00040285	0.565	0.00058849	1041.5688428744884	35.526	0.41376	35.526	35.319	35.733	0					10	7	2	0	0	0	0.71349	1	13193	13193		19.257	2.3147	1	18160000			37524	9621	24080	24203	36111	36111					0.042799573291858906
VSKVNGVTRMS	11	Unmodified	_VSKVNGVTRMS_					0	0	0		JARID2|p.P592Lfs*57|2|0.38|ENSG00000008083|chr6:15496995-15496995|C/-|frameshift_variant;JARID2|p.W677Mfs*133|1|0.53|ENSG00000008083|chr6:15500983-15500984|-/A|frameshift_variant;nc|ENSG00000008083|Q92833-2|JARID2;nc|ENSG00000008083|Q92833-3|JARID2;JARID2|p.E1073Kfs*106|1|0.17|ENSG00000008083|chr6:15512989-15512989|A/-|frameshift_variant;ENSG00000008083|ENST00000341776|JARID2	JARID2|p.P592Lfs*57|2|0.38|ENSG00000008083|chr6:15496995-15496995|C/-|frameshift_variant	JARID2|p.P592Lfs*57|2|0.38|ENSG00000008083|chr6:15496995-15496995|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	393.2150573730469	3	393.216774	1176.62849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.058	1	56.779	56.279	57.279	-0.27913								0	0	0	0.95976	1	21675	21675		1.2148	0.14337	1				37525	857	24081	24204	36112	36112					0.04724244548629031
VSLAPLMI	8	Unmodified	_VSLAPLMI_					0	0	0		ENST00000382788.7_1_4:3344685-3415804:+|nuORF;ENST00000511805.5_1_4:3344715-3380011:+|nuORF;ENST00000502947.1_1_4:3319716-3344781:+|nuORF	ENST00000382788.7_1_4:3344685-3415804:+|nuORF	ENST00000382788.7_1_4:3344685-3415804:+|nuORF	MSMS	HCT116MG_D190212_S1	1	422.2540588378906	2	422.254057	842.493561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.654	1	54.654	54.154	55.154	0								0	0	0	0.8837	1	20965	20965		4.756	0	1				37526	7585	24082	24205	36113	36113					0.06601416144815175
VSLASKIK	8	Unmodified	_VSLASKIK_					0	0	0		ENSG00000163535|ENST00000357799|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2;nc|ENSG00000163535|Q562F6-3|SGO2	ENSG00000163535|ENST00000357799|SGO2	ENSG00000163535|ENST00000357799|SGO2	MSMS	HCT116MG_D190212_S4	4	423.2749938964844	2	423.276378	844.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.048	1	52.714	52.214	53.214	-0.33473								0	0	0	0.8837	1	19794	19794		2.5775	0	1				37527	4608	24083	24206	36114	36114					0.10971563282510033
VSLATASASK	10	Unmodified	_VSLATASASK_					0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	MULTI-MSMS	HCT116MG_D190212_S4	4	467.763427734375	2	467.763832	933.513111	-0.15125	-7.075E-05	-0.7836	-0.00036654	-0.93485	-0.00043729	467.7632927414117	49.351	0.40043	48.989	48.765	49.166	-0.36213					10	7	2	0	0	0	0.88303	1	18293	18293		2.7352	2.7352	1	6980000	+		37528	11261	24084	24207	36115	36115					0.04369463689283748
VSLELPSPLV	10	Unmodified	_VSLELPSPLV_					0	0	0			REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	REV__ASXL3|p.P2037Hfs*43|1|0.33|ENSG00000141431|chr18:33745951-33745951|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	527.3557739257812	2	527.313158	1052.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.098	1	55.098	54.598	55.598	0								0	0	0	0.94339	1	21148	21148		6.2058	0	1		+		37529	9999	24085	24208	36116	36116					0.08756066934324735
VSLLKLKFKK	10	Unmodified	_VSLLKLKFKK_					0	0	0			REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD	REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MSMS	HCT116MG_D190212_S1	1	602.4114379882812	2	602.413009	1202.81146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.624	1	64.624	64.124	65.124	0								0	0	0	0.97116	1	24916	24916		0	0	1		+		37530	11193	24086	24209	36117	36117					0.2181716667271303
VSLLKLKFKK	10	Unmodified	_VSLLKLKFKK_					0	0	0			REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD	REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MSMS	HCT116MG_D190212_S3	3	602.4107666015625	2	602.413009	1202.81146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.101	1	60.855	60.355	61.355	-0.24588								0	0	0	0.96937	1	23312	23312		0.40072	0.40072	1		+		37531	11193	24086	24209	36118	36118					0.2181716667271303
VSLPRPGAH	9	Unmodified	_VSLPRPGAH_					0	0	0			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	MULTI-MSMS	HCT116MG_D190212_S1	1	467.2669982910156	2	467.266876	932.519199	0.2457	0.00011481	0.13476	6.2968E-05	0.38046	0.00017778	467.2668868932524	16.707	0.15604	16.707	16.629	16.785	0					4	2	2	0	0	0	0.59184	1	5667	5667		11.64	2.8949	1	5049300	+		37532	17237	24087	24210	36119	36119					0.050240267114645576
VSLVRVLRRL	10	Unmodified	_VSLVRVLRRL_					0	0	0		ENST00000522601.5_1_8:8094652-8094763:+|nuORF	ENST00000522601.5_1_8:8094652-8094763:+|nuORF	ENST00000522601.5_1_8:8094652-8094763:+|nuORF	MSMS	HCT116MG_D190212_S1	1	404.2752380371094	3	404.275063	1209.80336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.104	1	25.104	24.604	25.604	0								0	0	0	0.96769	1	9016	9016		0.77653	0.50751	1				37533	8564	24088	24211	36120	36120					0.20685032475989829
VSMKLTALIV	10	Unmodified	_VSMKLTALIV_					0	0	0			REV__ENST00000423757.1_1_7:149031294-149031639:+|nuORF	REV__ENST00000423757.1_1_7:149031294-149031639:+|nuORF	MSMS	HCT116MG_D190212_S1	1	358.89111328125	3	358.891227	1073.65185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.879	1	10.879	10.379	11.379	0								0	0	0	0.97116	1	3374	3374		0	0	1		+		37534	15537	24089	24212	36121	36121					0.1179729033322019
VSMTRLFSA	9	Unmodified	_VSMTRLFSA_					0	0	0			REV__ENST00000460926.1_1_3:171506733-171506892:-|nuORF	REV__ENST00000460926.1_1_3:171506733-171506892:-|nuORF	MSMS	HCT116MG_D190212_S1	1	506.26641845703125	2	506.268227	1010.5219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.228	1	50.228	49.728	50.728	0								0	0	0	0.41664	1	19160	19160		32.786	0.74821	1		+		37535	15777	24090	24213	36122	36122					0.017061140541159148
VSNLRCYGNL	10	Unmodified	_VSNLRCYGNL_					0	0	0			REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	MULTI-MSMS	HCT116MG_D190212_S4	4	569.786865234375	2	569.787315	1137.56008	0.54332	0.00030958	-0.56015	-0.00031916	-0.016825	-9.5867E-06	569.7873243451394	29.38	0.57132	29.031	28.617	29.189	-0.34921					22	10	3	0	0	0	0.55624	1	10541	10541		31.268	10.854	1	5597600	+		37536	12661	24091	24214	36123	36123					-0.0032000003120629117
VSNQEQPEPHL	11	Unmodified	_VSNQEQPEPHL_					0	0	0			REV__AluSp_dup1142|chr1:32231212-32231509:+|1.8451840621425188|0.2089834518128584|3.14|481.0|13|3|sense	REV__AluSp_dup1142|chr1:32231212-32231509:+|1.8451840621425188|0.2089834518128584|3.14|481.0|13|3|sense	MULTI-MSMS	HCT116MG_D190212_S4	4	639.3099975585938	2	639.309666	1276.60478	0.49386	0.00031573	0.40795	0.00026081	0.90181	0.00057654	639.3099540224027	23.877	0.46791	23.619	23.417	23.885	-0.25816					11	8	2	0	0	0	0.68491	1	8401	8401		26.021	9.4548	1	3481200	+		37537	9925	24092	24215	36124	36124					-0.02245897684178999
VSNQEQPEPHL	11	Unmodified	_VSNQEQPEPHL_					0	0	0			REV__AluSp_dup1142|chr1:32231212-32231509:+|1.8451840621425188|0.2089834518128584|3.14|481.0|13|3|sense	REV__AluSp_dup1142|chr1:32231212-32231509:+|1.8451840621425188|0.2089834518128584|3.14|481.0|13|3|sense	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	639.309666	1276.60478	0.49386	0.00031573	0.40795	0.00026081	0.90181	0.00057654	639.3099540224027	23.877	0.46791	23.619	23.417	23.885	-0.25816	-0.058296	0.00023018	NaN	26.021	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3481200	+		37538	9925	24092	24215							-0.02245897684178999
VSNQFMIEV	9	Unmodified	_VSNQFMIEV_					0	0	0			REV__LTR33_dup6907|chr13:43062072-43062490:-|1.5020271884645031|0.1937030753486897|2.95|477.0|19|1|anti-sense	REV__LTR33_dup6907|chr13:43062072-43062490:-|1.5020271884645031|0.1937030753486897|2.95|477.0|19|1|anti-sense	MULTI-SECPEP	HCT116MG_D190212_S2	2	534.2490234375	2	533.765517	1065.51648	0.43514	0.00023226	1.138	0.00060744	1.5732	0.0008397	533.7662232317138	19.185	0.15602	18.815	18.732	18.888	-0.3695					6	2	3	0	0	0	0.25656	1	6639	6639		5.7319	0	1	7209200	+		37539	10183	24093	24216	36125	36125					-0.013656095283522518
VSNTFTHL	8	Unmodified	_VSNTFTHL_					0	0	0			REV__ENST00000507209.5_1_4:187118658-187122526:+|nuORF	REV__ENST00000507209.5_1_4:187118658-187122526:+|nuORF	MSMS	HCT116MG_D190212_S1	1	459.7358093261719	2	459.737617	917.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.818	1	15.818	15.318	16.318	0								0	0	0	0.8837	1	5282	5282		5.2307	0.90143	1		+		37540	10324	24094	24217	36126	36126					-0.0013507465366728866
VSPAEMSSVR	10	Unmodified	_VSPAEMSSVR_					0	0	0			REV__ENST00000248958.4_1_22:21998288-21998567:+|nuORF	REV__ENST00000248958.4_1_22:21998288-21998567:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	355.19744873046875	3	354.846458	1061.51754	-0.39484	-0.00014011	-0.53533	-0.00018996	-0.93016	-0.00033006	354.8464660000896	18.918	0.26114	18.549	18.418	18.68	-0.3695					9	4	3	0	0	0	0.31009	1	6537	6537		8.4443	0.83535	1	14045000	+		37541	14578	24095	24218	36127	36127					-0.010753951594551836
VSPATAEEP	9	Unmodified	_VSPATAEEP_					0	0	0		ENST00000572426.5_1_17:3937307-3974023:-|nuORF;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;ENSG00000074755|ENST00000381638|ZZEF1	ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENST00000572426.5_1_17:3937307-3974023:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	450.7193298339844	2	450.71909	899.423627	0.1953	8.8024E-05	-0.10307	-4.6456E-05	0.092227	4.1568E-05	450.7190325652509	27.389	0.41619	27.22	27.016	27.432	-0.16933					11	7	2	0	0	0	0.32162	1	9898	9898		28.487	1.6032	1	1601200			37542	1301	24096	24219	36128	36128					-0.03010790990094847
VSPATAEEP	9	Unmodified	_VSPATAEEP_					0	0	0		ENST00000572426.5_1_17:3937307-3974023:-|nuORF;ZZEF1|p.K2387Sfs*40|1|0.38|ENSG00000074755|chr17:4022761-4022761|T/-|frameshift_variant;ENSG00000074755|ENST00000381638|ZZEF1	ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENST00000572426.5_1_17:3937307-3974023:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		2	450.71909	899.423627	0.38029	0.00017141	-0.56831	-0.00025615	-0.18801	-8.4742E-05	450.7187735230454	27.533	0.25965	27.212	26.992	27.252	-0.32157	-0.0041788	-0.00029802	NaN	28.487	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1341000			37543	1301	24096	24219							-0.03010790990094847
VSPDLHAE	8	Unmodified	_VSPDLHAE_					0	0	0			REV__CDH18|p.D724H|1|0.31|ENSG00000145526|chr5:19473429-19473429|C/G|missense_variant	REV__CDH18|p.D724H|1|0.31|ENSG00000145526|chr5:19473429-19473429|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	867.4213256835938	1	867.420673	866.413397	0.87268	0.00075698	-0.16786	-0.00014561	0.70482	0.00061137	867.4203908418671	22.15	0.20831	21.765	21.635	21.844	-0.38503					8	3	3	0	0	0	0.55794	1	7848	7848		36.044	0	1	27670000	+		37544	10133	24097	24220	36129	36129					-0.025153539246616674
VSPGLLDV	8	Unmodified	_VSPGLLDV_					0	0	0		ENST00000540093.2_2_12:2851859-2881072:-|nuORF	ENST00000540093.2_2_12:2851859-2881072:-|nuORF	ENST00000540093.2_2_12:2851859-2881072:-|nuORF	MSMS	HCT116MG_D190212_S2	2	400.23291015625	2	400.231636	798.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.454	1	12.157	11.657	12.657	-0.29721								0	0	0	0.8837	1	4072	4072		0.69038	0	1				37545	8687	24098	24221	36130	36130					0.041433086031474886
VSPHHPAP	8	Unmodified	_VSPHHPAP_					0	0	0		RUNX1-PROS1|2|fusion;RUNX1-PROS1|1|fusion;ENST00000469087.1_1_21:36206419-36206857:-|nuORF;nc|ENSG00000159216|Q01196-7|RUNX1;nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000159216|Q01196-4|RUNX1;nc|ENSG00000159216|Q01196-11|RUNX1;nc|ENSG00000159216|Q01196|RUNX1;nc|ENSG00000159216|Q01196-9|RUNX1;nc|ENSG00000159216|Q01196-2|RUNX1;ENSG00000159216|ENST00000675419|RUNX1;nc|ENSG00000159216|Q01196-10|RUNX1	RUNX1-PROS1|2|fusion;nc|ENSG00000159216|Q01196-10|RUNX1	RUNX1-PROS1|2|fusion	MSMS	HCT116MG_D190212_S1	1	421.2181701660156	2	421.219395	840.424236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.601	1	18.601	18.101	19.101	0								0	0	0	0.8837	1	6403	6403		5.7604	0	1				37546	18134;9514	24099	24222	36131	36131					-0.0023590675972400277
VSPKGPKQP	9	Unmodified	_VSPKGPKQP_					0	0	0			REV__nc|ENSG00000174669|Q14542-3|SLC29A2	REV__nc|ENSG00000174669|Q14542-3|SLC29A2	MSMS	HCT116MG_D190212_S4	4	469.2760314941406	2	469.276909	936.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.313	1	34.927	34.427	35.427	-0.38606								0	0	0	0.76718	1	12929	12929		10.824	0.64053	1		+		37547	13491	24100	24223	36132	36132					0.06845777651426488
VSPLHVPG	8	Unmodified	_VSPLHVPG_					0	0	0		ENST00000471408.5_1_12:6649651-6659338:-|nuORF	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	ENST00000471408.5_1_12:6649651-6659338:-|nuORF	MSMS	HCT116MG_D190212_S4	4	403.2323913574219	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.1793	1	3.9147	3.4147	4.4147	-0.26456								0	0	0	0.8837	1	1277	1277		0.79363	0	1				37548	8154	24101	24224	36133	36133					0.03934148042867491
VSPSQPCPSPR	11	Unmodified	_VSPSQPCPSPR_					0	0	0		ENST00000216962.8_1_20:25278065-25278461:+|nuORF	ENST00000216962.8_1_20:25278065-25278461:+|nuORF	ENST00000216962.8_1_20:25278065-25278461:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	577.784423828125	2	577.784773	1153.55499	0.36968	0.0002136	-0.24377	-0.00014085	0.12591	7.2749E-05	577.7847557492685	22.97	0.821	22.951	22.335	23.156	-0.018869					33	15	3	0	0	0	0.71776	1	7942	7942		15.248	0.8431	1	17294000			37549	6744	24102	24225	36134	36134					-0.015643038938378595
VSPVPVLPDP	10	Unmodified	_VSPVPVLPDP_					0	0	0		ENST00000398073.6_1_12:58220812-58221359:-|nuORF	ENST00000398073.6_1_12:58220812-58221359:-|nuORF	ENST00000398073.6_1_12:58220812-58221359:-|nuORF	MSMS	HCT116MG_D190212_S1	1	510.2912292480469	2	510.292225	1018.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.706	1	20.706	20.206	21.206	0								0	0	0	0.90475	1	7251	7251		14.838	2.3067	1				37550	7681	24103	24226	36135	36135					0.061355112458159056
VSQINHPV	8	Unmodified	_VSQINHPV_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MSMS	HCT116MG_D190212_S2	2	447.24517822265625	2	447.245609	892.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.868	1	24.493	23.993	24.993	-0.37521								0	0	0	0.8837	1	8930	8930		10.183	0	1				37551	5452	24104	24227	36136	36136					0.02612631583235725
VSQRVADYSAD	11	Unmodified	_VSQRVADYSAD_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	HCT116MG_D190212_S4	4	605.7888793945312	2	605.788566	1209.56258	1.244	0.00075363	-1.6162	-0.00097906	-0.37213	-0.00022543	606.2881725891051	24.897	0.98685	24.628	24.134	25.121	-0.26881					28	18	2	0	0	0	0.70662	1	8847	8847		19.362	5.4559	1	7485000	+		37552	10969	24105	24228	36137	36137					-0.033818730925759155
VSQTLVSLPG	10	Unmodified	_VSQTLVSLPG_					0	0	0			REV__nc|ENSG00000125743|P62316-2|SNRPD2	REV__nc|ENSG00000125743|P62316-2|SNRPD2	MSMS	HCT116MG_D190212_S1	1	500.39752197265625	2	500.787307	999.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.502	1	21.502	21.002	22.002	0								0	0	0	0.7978	1	7567	7567		29.082	1.4528	1		+		37553	11816	24106	24229	36138	36138					0.06026323240428155
VSRPLISRGRA	11	Unmodified	_VSRPLISRGRA_					0	0	0			REV__ENST00000281708.8_1_4:153456687-153456741:-|nuORF	REV__ENST00000281708.8_1_4:153456687-153456741:-|nuORF	MSMS	HCT116MG_D190212_S1	1	404.5818786621094	3	404.582556	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.704	1	49.704	49.204	50.204	0								0	0	0	0.95636	1	18946	18946		1.2148	0.20126	1		+		37554	14718	24107	24230	36139	36139					0.12890394539795125
VSRQMNPAN	9	Unmodified	_VSRQMNPAN_					0	0	0		NCOA6|p.N249S|1|0.39|ENSG00000198646|chr20:34758002-34758002|T/C|missense_variant	NCOA6|p.N249S|1|0.39|ENSG00000198646|chr20:34758002-34758002|T/C|missense_variant	NCOA6|p.N249S|1|0.39|ENSG00000198646|chr20:34758002-34758002|T/C|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	508.7857971191406	2	508.750733	1015.48691	0.051815	2.6361E-05	0.61121	0.00031095	0.66303	0.00033732	508.75138242654793	18.365	0.15693	18.002	17.904	18.061	-0.36325					4	2	2	0	0	0	0.25347	1	6276	6276		10.074	2.1638	1	1902600			37555	9688	24108	24231	36140	36140					-0.02021128753847279
VSRYENIFY	9	Unmodified	_VSRYENIFY_					0	0	0		ENSG00000269964|ENST00000684080|MEI4	ENSG00000269964|ENST00000684080|MEI4	ENSG00000269964|ENST00000684080|MEI4	MSMS	HCT116MG_D190212_S1	1	595.7958984375	2	595.795663	1189.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.054	1	37.054	36.554	37.554	0								0	0	0	0.64932	1	13832	13832		21.537	0.95604	1				37556	6658	24109	24232	36141	36141					-0.010431758736103802
VSSENGGG	8	Unmodified	_VSSENGGG_					0	0	0		nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F;ENSG00000049769|ENST00000055335|PPP1R3F	nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F	nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F	MULTI-MSMS	HCT116MG_D190212_S2	2	706.300537109375	1	706.300224	705.292947	0.8185	0.00057811	1.162	0.00082073	1.9805	0.0013988	706.3007695044765	32.334	0.41613	32.104	31.89	32.306	-0.23009					11	7	2	0	0	0	0.69106	1	11980	11980		24.021	3.5669	1	10198000			37557	1046	24110	24233	36142	36142					-0.07148761918256241
VSSGNEDKERR	11	Unmodified	_VSSGNEDKERR_					0	0	0		ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	MSMS	HCT116MG_D190212_S1	1	638.8162231445312	2	638.815647	1275.61674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.089	1	11.089	10.589	11.589	0								0	0	0	0.96208	1	3459	3459		0	0	1				37558	6237	24111	24234	36143	36143					-0.010042809410151676
VSSGTISRM	9	Unmodified	_VSSGTISRM_					0	0	0			REV__ENSG00000283776|ENST00000639073|TAF11L13	REV__ENSG00000283776|ENST00000639073|TAF11L13	MULTI-MSMS	HCT116MG_D190212_S2	2	469.2406005859375	2	469.242209	936.469866	0.32698	0.00015343	-0.58393	-0.000274	-0.25695	-0.00012057	469.24028037714777	34.286	0.36346	34.111	33.916	34.279	-0.17512					14	6	3	0	0	0	0.063511	1	12762	12762		68.081	7.6912	1	39990000	+		37559	14481	24112	24235	36144	36144					-0.0009104935963932803
VSSGTISRM	9	Unmodified	_VSSGTISRM_					0	0	0			REV__ENSG00000283776|ENST00000639073|TAF11L13	REV__ENSG00000283776|ENST00000639073|TAF11L13	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	469.242209	936.469866	0.32698	0.00015343	-0.58393	-0.000274	-0.25695	-0.00012057	469.24028037714777	34.286	0.36346	34.111	33.916	34.279	-0.17512	0.008107	0.0008294	NaN	68.081	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39990000	+		37560	14481	24112	24235							-0.0009104935963932803
VSSLIKKKK	9	Unmodified	_VSSLIKKKK_					0	0	0			REV__ENSG00000196476|ENST00000360321|C20orf96	REV__ENSG00000196476|ENST00000360321|C20orf96	MULTI-MSMS	HCT116MG_D190212_S3	3	1031.6973876953125	1	1030.69829	1029.69102	0.80734	0.00083212	-2.408	-0.0024819	-1.6007	-0.0016498	1031.697849789861	62.714	0.25444	62.491	62.439	62.693	-0.22315					13	13	2	0	0	0	0.76814	1	23966	23966		0.52476	0	1	460510	+		37561	14027	24113	24236	36145	36145					0.17735758679123137
VSSLIKKKK	9	Unmodified	_VSSLIKKKK_					0	0	0			REV__ENSG00000196476|ENST00000360321|C20orf96	REV__ENSG00000196476|ENST00000360321|C20orf96	MULTI-SECPEP	HCT116MG_D190212_S3	3	1031.3648681640625	1	1030.69829	1029.69102	0.80734	0.00083212	-2.408	-0.0024819	-1.6007	-0.0016498	1031.697849789861	62.714	0.25444	62.491	62.439	62.693	-0.22315					13	13	2	0	0	0	0.27049	1	23940	23940		0.52476	0	1	460510	+		37562	14027	24113	24236	36146	36146					0.17735758679123137
VSSLQETM	8	Unmodified	_VSSLQETM_					0	0	0		tr|U7SKH9|U7SKH9_FUSNUChemotaxisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01998PE=4SV=1	tr|U7SKH9|U7SKH9_FUSNUChemotaxisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01998PE=4SV=1	tr|U7SKH9|U7SKH9_FUSNUChemotaxisproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01998PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S3	3	894.4239501953125	1	894.42371	893.416433	1.1353	0.0010155	-0.54445	-0.00048697	0.59089	0.0005285	894.4228229637046	49.038	0.26505	48.722	48.605	48.87	-0.31596					6	4	2	0	0	0	0.55794	1	18502	18502		36.044	3.9272	1	2485500			37563	18324	24114	24237	36147	36147					-0.0345384686216903
VSSNRKAYASR	11	Unmodified	_VSSNRKAYASR_					0	0	0			REV__ENSG00000158470|ENST00000371711|B4GALT5	REV__ENSG00000158470|ENST00000371711|B4GALT5	MSMS	HCT116MG_D190212_S1	1	619.8338012695312	2	619.833643	1237.65273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.108	1	11.108	10.608	11.608	0								0	0	0	0.96208	1	3467	3467		0	0	1		+		37564	12785	24115	24238	36148	36148					0.04341221026470521
VSSSVDGA	8	Unmodified	_VSSSVDGA_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MSMS	HCT116MG_D190212_S1	1	361.1706848144531	2	361.171776	720.328998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.643	1	63.643	63.143	64.143	0								0	0	0	0.8837	1	24585	24585		0.6015	0	1		+		37565	10769	24116	24239	36149	36149					-0.04235304741428081
VSSTSEIGTRY	11	Unmodified	_VSSTSEIGTRY_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	HCT116MG_D190212_S1	1	600.2988891601562	2	600.298767	1198.58298	0.60012	0.00036025	0.059985	3.6009E-05	0.66011	0.00039626	600.2986793424872	27.982	0.36445	27.982	27.696	28.06	0					10	6	3	0	0	0	0.025528	1	10183	10183		128.58	88.339	1	15178000			37566	1913	24117	24240	36150	36150					-0.008367024327526451
VSSTSEIGTRY	11	Unmodified	_VSSTSEIGTRY_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	HCT116MG_D190212_S2	2	600.2992553710938	2	600.298767	1198.58298	0.68253	0.00040972	-0.018323	-1.0999E-05	0.6642	0.00039872	600.2988028993832	28.372	0.46615	28.042	27.667	28.133	-0.32987					13	8	3	0	0	0	0.031511	1	10354	10354		104.48	76.856	1	41991000			37567	1913	24117	24240	36151	36151					-0.008367024327526451
VSSYERKEPD	10	Unmodified	_VSSYERKEPD_					0	0	0			REV__nc|ENSG00000175449|Q8TAC1|RFESD	REV__nc|ENSG00000175449|Q8TAC1|RFESD	MULTI-MSMS	HCT116MG_D190212_S2	2	605.291259765625	2	605.290942	1208.56733	0.63664	0.00038535	-0.1832	-0.00011089	0.45344	0.00027446	605.2908468540417	20.361	0.26498	19.981	19.865	20.13	-0.37949					9	4	3	0	0	0	0.7974	1	7153	7153		12.241	4.0851	1	7409600	+		37568	13514	24118	24241	36152	36152					-0.0286098894978295
VSTKSTSQAS	10	Unmodified	_VSTKSTSQAS_					0	0	0			REV__TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant	REV__TAB1|p.T433Pfs*9|2|0.37|ENSG00000100324|chr22:39428168-39428168|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	497.7512512207031	2	498.253828	994.493104	0.37063	0.00018467	-0.59089	-0.00029441	-0.22026	-0.00010975	498.25307251302945	31.768	0.88181	31.393	30.76	31.642	-0.37529					24	16	3	0	0	0	0.28843	1	11513	11513		24.021	12.526	1	10409000	+		37569	11077	24119	24242	36153	36153					-0.004363320413176552
VSTMDSSFPYA	11	Unmodified	_VSTMDSSFPYA_					0	0	0		IGSF3|p.G763Afs*27|2|0.32|ENSG00000143061|chr1:116588846-116588846|C/-|frameshift_variant;IGSF3|p.R1001Gfs*34|1|0.12|ENSG00000143061|chr1:116579725-116579725|T/-|frameshift_variant;ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3	IGSF3|p.G763Afs*27|2|0.32|ENSG00000143061|chr1:116588846-116588846|C/-|frameshift_variant	IGSF3|p.G763Afs*27|2|0.32|ENSG00000143061|chr1:116588846-116588846|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	401.7633361816406	3	402.177873	1203.51179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.216	1	61.984	61.484	62.484	-0.23129								0	0	0	0.95636	1	23763	23763		1.2148	0	1				37570	3783	24120	24243	36154	36154					-0.0818253846175594
VSTRKDEEYRK	11	Unmodified	_VSTRKDEEYRK_					0	0	0			REV__RAD54L2|p.S971R|1|0.37|ENSG00000164080|chr3:51646368-51646368|C/A|missense_variant	REV__RAD54L2|p.S971R|1|0.37|ENSG00000164080|chr3:51646368-51646368|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	705.8712158203125	2	705.870422	1409.72629	0.89444	0.00063136	-0.33273	-0.00023486	0.56171	0.00039649	705.870199570394	19.544	0.2596	19.174	19.044	19.304	-0.3695					10	4	3	0	0	0	0.70939	1	6799	6799		28.495	28.495	1	49463000	+		37571	17460	24121	24244	36155	36155					0.037817246783106384
VSTRSQNLP	9	Unmodified	_VSTRSQNLP_					0	0	0		nc|ENSG00000119707|P49756-4|RBM25	nc|ENSG00000119707|P49756-4|RBM25	nc|ENSG00000119707|P49756-4|RBM25	MULTI-MSMS	HCT116MG_D190212_S3	3	501.2669677734375	2	501.272355	1000.53016	0.56217	0.0002818	0.13228	6.6311E-05	0.69446	0.00034811	501.2724438546417	26.274	0.52126	26.124	25.838	26.359	-0.14924					16	9	3	0	0	0	0.41514	1	9308	9308		21.747	2.4897	1	14486000			37572	9438	24122	24245	36156	36156					0.02991384295091848
VSTSSSVGVYS	11	Unmodified	_VSTSSSVGVYS_					0	0	0			REV__TBX18|p.K539Nfs*25|1|0.15|ENSG00000112837|chr6:84736895-84736895|G/-|frameshift_variant	REV__TBX18|p.K539Nfs*25|1|0.15|ENSG00000112837|chr6:84736895-84736895|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	536.7619018554688	2	536.761486	1071.50842	0.40773	0.00021885	0.26152	0.00014037	0.66925	0.00035923	536.7616140737388	26.446	0.36286	26.084	25.921	26.284	-0.36164					13	6	3	0	0	0	0.60935	1	9581	9581		34.402	34.402	1	23506000	+		37573	11471	24123	24246	36157	36157					-0.024474652441313083
VSTSSSVGVYS	11	Unmodified	_VSTSSSVGVYS_					0	0	0			REV__TBX18|p.K539Nfs*25|1|0.15|ENSG00000112837|chr6:84736895-84736895|G/-|frameshift_variant	REV__TBX18|p.K539Nfs*25|1|0.15|ENSG00000112837|chr6:84736895-84736895|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	536.7617797851562	2	536.761486	1071.50842	0.59223	0.00031788	-0.11231	-6.0282E-05	0.47992	0.0002576	536.7612962136976	26.17	0.26062	26.042	25.911	26.172	-0.12795					7	4	2	0	0	0	0.67041	1	9390	9390		27.629	4.8925	1	5584300	+		37574	11471	24123	24246	36158	36158					-0.024474652441313083
VSTWHDPRIP	10	Unmodified	_VSTWHDPRIP_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-MSMS	HCT116MG_D190212_S4	4	604.3148193359375	2	604.314554	1206.61456	1.0664	0.00064447	-0.6747	-0.00040773	0.39175	0.00023674	604.3145926641714	31.516	0.26	31.146	30.971	31.231	-0.37026					9	4	3	0	0	0	0.64492	1	11436	11436		24.991	0.97039	1	4999900			37575	6263	24124	24247	36159	36159					0.01951335111834851
VSTWHDPRIP	10	Unmodified	_VSTWHDPRIP_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-MSMS	HCT116MG_D190212_S4	4	403.2119445800781	3	403.212128	1206.61456	0.034964	1.4098E-05	0.54558	0.00021999	0.58055	0.00023408	403.21242619326335	31.485	0.26	31.114	30.971	31.231	-0.37026					8	4	2	0	0	0	0.77151	1	11457	11457		9.2438	3.0094	1	2431000			37576	6263	24124	24247	36160	36160					0.01951335111834851
VSTWHDPRIP	10	Unmodified	_VSTWHDPRIP_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	604.314554	1206.61456	0.4966	0.00030011	0.050637	3.0601E-05	0.54724	0.00033071	604.3148152437287	31.361	0.3134	31.091	30.908	31.221	-0.27028	-0.027804	0.00047022	NaN	24.991	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5027100			37577	6263	24124	24247							0.01951335111834851
VSTWHDPRIP	10	Unmodified	_VSTWHDPRIP_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	604.314554	1206.61456	1.0664	0.00064447	-0.6747	-0.00040773	0.39175	0.00023674	604.3145926641714	31.516	0.26	31.146	30.971	31.231	-0.37026	0.027804	-0.00040644	NaN	24.991	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4999900			37578	6263	24124	24247							0.01951335111834851
VSVGTSVLAA	10	Unmodified	_VSVGTSVLAA_					0	0	0		ENST00000301019.8_1_16:88874851-88875028:+|nuORF	ENST00000301019.8_1_16:88874851-88875028:+|nuORF	ENST00000301019.8_1_16:88874851-88875028:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	452.7296447753906	2	452.260925	902.507297	0.070054	3.1683E-05	0.17728	8.0176E-05	0.24733	0.00011186	452.26086852920014	27.256	0.26046	27.256	27.125	27.386	0					9	4	3	0	0	0	0.76634	1	9837	9837		14.838	0	1	35671000			37579	6996	24125	24248	36161	36161					0.052143651776077604
VSVQPNFQQDK	11	Unmodified	_VSVQPNFQQDK_					0	0	0		ENST00000371623.5_1_9:139871991-139873900:+|nuORF;ENSG00000107317|ENST00000371625|PTGDS	ENST00000371623.5_1_9:139871991-139873900:+|nuORF	ENST00000371623.5_1_9:139871991-139873900:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	645.327880859375	2	645.327859	1288.64116	0.45095	0.00029101	-0.63165	-0.00040762	-0.18069	-0.00011661	645.3270700329952	30.705	0.57651	30.341	30.194	30.771	-0.36416					21	16	2	0	0	0	0.71182	1	11222	11222		17.443	1.2935	1	4455300			37580	2111	24126	24249	36162	36162					0.00838979212517188
VSVSEIVDPY	10	Unmodified	_VSVSEIVDPY_					0	0	0			REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	REV__tr|U7T6Z8|U7T6Z8_FUSNUGMPsynthase[glutamine-hydrolyzing]OS=FusobacteriumnucleatumCTI-5OX=1316586GN=guaAPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	554.2825317382812	2	554.282054	1106.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.52	1	30.52	30.02	31.02	0								0	0	0	0.86471	1	11197	11197		20.454	3.3407	1		+		37581	18006	24127	24250	36163	36163					0.000542957953257428
VSVWSFSGVY	10	Unmodified	_VSVWSFSGVY_					0	0	0			REV__ENST00000489728.1_1_11:61188804-61196932:-|nuORF	REV__ENST00000489728.1_1_11:61188804-61196932:-|nuORF	MSMS	HCT116MG_D190212_S4	4	565.7770385742188	2	565.779482	1129.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.126	1	33.741	33.241	34.241	-0.38535								0	0	0	0.36502	1	12449	12449		54.774	4.8406	1		+		37582	16027	24128	24251	36164	36164					-0.015179632766148643
VSWDGNPERY	10	Unmodified	_VSWDGNPERY_					0	0	0		ENSG00000149573|ENST00000278937|MPZL2;ENST00000529376.5_1_11:118130767-118134958:-|nuORF	ENSG00000149573|ENST00000278937|MPZL2	ENSG00000149573|ENST00000278937|MPZL2	MULTI-MSMS	HCT116MG_D190212_S1	1	611.7782592773438	2	611.778002	1221.54145	0.61618	0.00037697	-0.47959	-0.00029341	0.13659	8.356E-05	611.7776230690365	35.863	0.36396	35.863	35.682	36.046	0					16	6	3	0	0	0	0.042984	1	13358	13358		114.5	80.095	1	34216000			37583	4067	24129	24252	36165	36165					-0.060458384014282274
VSWDGNPERY	10	Unmodified	_VSWDGNPERY_					0	0	0		ENSG00000149573|ENST00000278937|MPZL2;ENST00000529376.5_1_11:118130767-118134958:-|nuORF	ENSG00000149573|ENST00000278937|MPZL2	ENSG00000149573|ENST00000278937|MPZL2	MULTI-MSMS	HCT116MG_D190212_S2	2	612.2803344726562	2	611.778002	1221.54145	0.85536	0.00052329	-0.72763	-0.00044515	0.12773	7.8142E-05	611.777359991058	35.87	0.4636	35.742	35.555	36.019	-0.12799					20	8	4	0	0	0	0.025634	1	13385	13385		135.86	94.024	1	110470000			37584	4067	24129	24252	36166	36166					-0.060458384014282274
VSWLGKYSY	9	Unmodified	_VSWLGKYSY_					0	0	0			REV__DDX43|p.R345W|1|0.15|ENSG00000080007|chr6:73407611-73407611|C/T|missense_variant	REV__DDX43|p.R345W|1|0.15|ENSG00000080007|chr6:73407611-73407611|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	368.191162109375	3	368.190442	1101.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.744	1	22.744	22.244	23.244	0								0	0	0	0.76793	1	8067	8067		8.1555	4.2111	1		+		37585	10348	24130	24253	36167	36167					0.0027834058601001743
VSYEILPISY	10	Unmodified	_VSYEILPISY_					0	0	0			REV__ENST00000435041.2_1_6:90038920-90039049:-|nuORF	REV__ENST00000435041.2_1_6:90038920-90039049:-|nuORF	MSMS	HCT116MG_D190212_S4	4	592.3176879882812	2	592.315897	1182.61724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.907	1	33.523	33.023	34.023	-0.38426								0	0	0	0.94339	1	12360	12360		6.2058	0	1		+		37586	15614	24131	24254	36168	36168					0.033237457261748204
VTAESLHLVY	10	Unmodified	_VTAESLHLVY_					0	0	0		ENST00000500869.6_1_5:89812152-89812287:-|nuORF	ENST00000500869.6_1_5:89812152-89812287:-|nuORF	ENST00000500869.6_1_5:89812152-89812287:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	566.3060913085938	2	566.305864	1130.59717	0.46071	0.0002609	-0.016449	-9.3154E-06	0.44426	0.00025159	566.3060334256832	43.506	0.30959	43.433	43.252	43.561	-0.073376					9	5	2	0	0	0	0.56527	1	16508	16508		30.637	3.0077	1	25407000			37587	8423	24132	24255	36169	36169					0.03709994786186144
VTAFPMDV	8	Unmodified	_VTAFPMDV_					0	0	0			REV__AKAP7|p.K79Rfs*21|1|0.73|ENSG00000118507|chr6:131160136-131160136|A/-|frameshift_variant	REV__AKAP7|p.K79Rfs*21|1|0.73|ENSG00000118507|chr6:131160136-131160136|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	879.4285888671875	1	879.428067	878.42079	0.92694	0.00081518	-0.41402	-0.0003641	0.51292	0.00045108	879.4277797057264	56.734	0.21328	56.555	56.421	56.635	-0.17904					8	3	3	0	0	0	0.60268	1	21920	21920		32.117	0	1	37490000	+		37588	9906	24133	24256	36170	36170					-0.023283376485892404
VTAFQRPV	8	Unmodified	_VTAFQRPV_					0	0	0		ENST00000519604.5_1_20:61919324-61919672:+|nuORF	ENST00000519604.5_1_20:61919324-61919672:+|nuORF	ENST00000519604.5_1_20:61919324-61919672:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	459.26409912109375	2	459.263802	916.513051	0.41708	0.00019155	0.17795	8.1726E-05	0.59503	0.00027327	459.2638033192067	33.612	0.31083	33.419	33.276	33.587	-0.19297					13	5	3	0	0	0	0.53596	1	12495	12495		37.974	5.1883	1	59219000			37589	8548	24134	24257	36171	36171					0.05145508479949967
VTALAHPP	8	Unmodified	_VTALAHPP_					0	0	0		ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	MSMS	HCT116MG_D190212_S4	4	403.23260498046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3009	1	1.0363	0.53631	1.5363	-0.26456								0	0	0	0.8837	1	403	403		0.79363	0	1				37590	2338	24135	24258	36172	36172					0.039341480428561226
VTALTKKPD	9	Unmodified	_VTALTKKPD_					0	0	0		ENSG00000161640|ENST00000447370|SIGLEC11;nc|ENSG00000161640|Q96RL6-2|SIGLEC11;SIGLEC11|p.S508Afs*11|1|0.32|ENSG00000161640|chr19:49958413-49958413|G/-|frameshift_variant	ENSG00000161640|ENST00000447370|SIGLEC11	ENSG00000161640|ENST00000447370|SIGLEC11	MSMS	HCT116MG_D190212_S3	3	486.7901916503906	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.307	1	43.003	42.503	43.503	-0.30472								0	0	0	0.71946	1	16156	16156		18.146	0.011366	1				37591	4490	24136	24259	36173	36173					0.07822627103041668
VTAPVLPAPA	10	Unmodified	_VTAPVLPAPA_					0	0	0			REV__nc|ENSG00000138443|Q9NYB9-4|ABI2	REV__nc|ENSG00000138443|Q9NYB9-4|ABI2	MSMS	HCT116MG_D190212_S3	3	468.281005859375	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.752	1	33.462	32.962	33.962	-0.29013								0	0	0	0.87399	1	12399	12399		19.257	0	1		+		37592	12226	24137	24260	36174	36174					0.07887545936932838
VTASGCRV	8	Unmodified	_VTASGCRV_					0	0	0		CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant;ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;CELSR3|p.A2340Pfs*45|1|0.25|ENSG00000008300|chr3:48647952-48647952|C/-|frameshift_variant	CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant	CELSR3|p.R2529Pfs*2|1|0.34|ENSG00000008300|chr3:48645746-48645747|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	792.4041748046875	1	792.403249	791.395972	1.1384	0.00090209	0.55079	0.00043645	1.6892	0.0013385	792.4035277181597	43.561	0.41228	43.488	43.303	43.715	-0.073376					17	7	3	0	0	0	0.77063	1	16523	16523		14.838	0.25658	1	189190000			37593	398	24138	24261	36175	36175					-0.00806972731299993
VTASTSIQL	9	Unmodified	_VTASTSIQL_					0	0	0		nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;ENSG00000157445|ENST00000474759|CACNA2D3	nc|ENSG00000157445|Q8IZS8-2|CACNA2D3	nc|ENSG00000157445|Q8IZS8-2|CACNA2D3	MSMS	HCT116MG_D190212_S1	1	460.2588806152344	2	460.258382	918.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.594	1	32.594	32.094	33.094	0								0	0	0	0.67173	1	12033	12033		20.454	0	1				37594	4327	24139	24262	36176	36176					0.03970061315010298
VTATTLSILPA	11	Unmodified	_VTATTLSILPA_					0	0	0		ENST00000472157.1_1_1:46806507-46807258:+|nuORF	ENST00000472157.1_1_1:46806507-46807258:+|nuORF	ENST00000472157.1_1_1:46806507-46807258:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	543.706787109375	2	543.823889	1085.63323	0.49651	0.00027001	-0.66456	-0.00036141	-0.16806	-9.1394E-05	543.8248315942728	48.999	0.30273	48.845	48.682	48.985	-0.15405					7	5	2	0	0	0	0.36231	1	18770	18770		8.7454	4.801	1	17945000			37595	8171	24140	24263	36177	36177					0.09383451963049083
VTAVAKMLAK	10	Unmodified	_VTAVAKMLAK_					0	0	0			REV__nc|ENSG00000135047|P07711-3|CTSL	REV__nc|ENSG00000135047|P07711-3|CTSL	MSMS	HCT116MG_D190212_S1	1	516.319580078125	2	516.31772	1030.62089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.42	1	50.42	49.92	50.92	0								0	0	0	0.93466	1	19238	19238		8.1555	0.8663	1		+		37596	12077	24141	24264	36178	36178					0.10680137019016911
VTCVLIWVV	9	Unmodified	_VTCVLIWVV_					0	0	0		ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	MSMS	HCT116MG_D190212_S4	4	516.302001953125	2	516.301539	1030.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.264	1	38.884	38.384	39.384	-0.38055								0	0	0	0.768	1	14420	14420		7.9102	0	1				37597	1729	24142	24265	36179	36179					0.07445349616023123
VTDCSDDSDGE	11	Unmodified	_VTDCSDDSDGE_					0	0	0			REV__ENSG00000167778|ENST00000301463|SPRYD3	REV__ENSG00000167778|ENST00000301463|SPRYD3	MSMS	HCT116MG_D190212_S2	2	571.6929321289062	2	571.69314	1141.37173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.848	1	50.671	50.171	51.171	-0.17717								0	0	0	0.95113	1	19496	19496		5.7319	2.4505	1		+		37598	13168	24143	24266	36180	36180					-0.19330367256816317
VTDDPTQV	8	Unmodified	_VTDDPTQV_					0	0	0		YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant;ENSG00000100811|ENST00000262238|YY1	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	YY1|p.D231Rfs*3|1|0.34|ENSG00000100811|chr14:100262306-100262307|-/A|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	874.4152221679688	1	874.415253	873.407977	0.91948	0.00080401	-0.16888	-0.00014767	0.7506	0.00065634	874.4149522131211	26.551	0.36427	26.402	26.203	26.567	-0.14924					9	6	2	0	0	0	0.023875	1	9549	9549		149.99	53.71	1	2719900			37599	1732	24144	24267	36181	36181					-0.03379077507122474
VTDDSPKYNY	10	Unmodified	_VTDDSPKYNY_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	HCT116MG_D190212_S1	1	601.2725830078125	2	601.272218	1200.52988	0.53853	0.0003238	-0.0054606	-3.2833E-06	0.53307	0.00032052	601.2721683584875	26.527	0.36432	26.527	26.345	26.709	0					17	6	4	0	0	0	5.1675E-12	1	9572	9572		234.93	165.82	1	72538000			37600	1546	24145	24268	36182	36182					-0.0623608021542168
VTDDSPKYNY	10	Unmodified	_VTDDSPKYNY_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	601.2725219726562	2	601.272218	1200.52988	0.64115	0.00038551	0.14506	8.7223E-05	0.78622	0.00047273	601.2721348780921	26.864	0.62986	26.511	26.241	26.871	-0.35254					29	11	4	0	0	0	1.5755E-06	2	9732	9713;9732		205.91	136.81	1	167840000			37601	1546	24145	24268	36183;36184	36184					-0.0623608021542168
VTDDSPKYNY	10	Unmodified	_VTDDSPKYNY_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	HCT116MG_D190212_S3	3	601.27294921875	2	601.272218	1200.52988	0.64563	0.0003882	0.18201	0.00010944	0.82765	0.00049764	601.2723692751936	26.768	0.31221	26.619	26.463	26.775	-0.14924					10	5	3	0	0	0	0.0045823	1	9636	9636		168.54	126.7	1	6913500			37602	1546	24145	24268	36185	36185					-0.0623608021542168
VTDEGQLY	8	Unmodified	_VTDEGQLY_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75573136-75593624:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-MSMS	HCT116MG_D190212_S3	3	924.4318237304688	1	924.430903	923.423627	0.90325	0.000835	-0.17173	-0.00015875	0.73153	0.00067625	924.430797649751	34.087	0.36455	33.793	33.559	33.923	-0.29419					9	6	2	0	0	0	0.057785	1	12551	12551		114.94	40.547	1	3944200			37603	2652	24146	24269	36186	36186					-0.041147909900928425
VTDGAILGKLY	11	Unmodified	_VTDGAILGKLY_					0	0	0		KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant;KMT2C|p.I4868Lfs*37|1|0.28|ENSG00000055609|chr7:152138837-152138837|T/-|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.T3715Qfs*4|1|0.34|ENSG00000055609|chr7:152162434-152162434|T/-|frameshift_variant;KMT2C|p.P2292Hfs*13|1|0.25|ENSG00000055609|chr7:152180985-152180985|G/-|frameshift_variant;KMT2C|p.S2816Ifs*6|1|0.44|ENSG00000055609|chr7:152177007-152177008|-/T|frameshift_variant;KMT2C|p.K2867Dfs*7|1|0.28|ENSG00000055609|chr7:152176853-152176854|TT/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	KMT2C|p.F4496Lfs*21|3|0.28|ENSG00000055609|chr7:152148439-152148439|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	575.1049194335938	2	575.329339	1148.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.753	1	48.437	47.937	48.937	-0.31596								0	0	0	0.3401	1	18345	18345		55.235	34.82	1				37604	1080	24147	24270	36187	36187					0.0757485433734928
VTDGGMYVFQ	10	Unmodified	_VTDGGMYVFQ_					0	0	0		nc|ENSG00000130821|P48029-3|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	nc|ENSG00000130821|P48029-3|SLC6A8	MULTI-MSMS	HCT116MG_D190212_S3	3	372.8397216796875	3	372.839192	1115.49575	-0.1913	-7.1324E-05	1.2497	0.00046593	1.0584	0.00039461	372.83985490042437	21.218	0.26208	21.236	21.115	21.377	0.018446					6	4	2	0	0	0	0.86862	1	7417	7417		3.3196	0.58445	1	2379100			37605	3107	24148	24271	36188	36188					-0.05738199908023489
VTDGHPLE	8	Unmodified	_VTDGHPLE_					0	0	0		COL6A1|p.R384Dfs*121|1|0.3|ENSG00000142156|chr21:45992036-45992036|G/-|frameshift_variant;COL6A1|p.E705Rfs*98|2|0.58|ENSG00000142156|chr21:46002260-46002260|G/-|frameshift_variant;ENSG00000142156|ENST00000361866|COL6A1	COL6A1|p.R384Dfs*121|1|0.3|ENSG00000142156|chr21:45992036-45992036|G/-|frameshift_variant	COL6A1|p.R384Dfs*121|1|0.3|ENSG00000142156|chr21:45992036-45992036|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	434.21405029296875	2	434.213975	866.413397	0.071614	3.1096E-05	0.21015	9.125E-05	0.28176	0.00012235	434.21398979181333	22.15	0.26032	21.765	21.635	21.896	-0.38503					13	4	4	0	0	0	0.43493	1	7835	7835		46.921	0	1	96940000			37606	529	24149	24272	36189	36189					-0.025153539246502987
VTDGHPLE	8	Unmodified	_VTDGHPLE_					0	0	0		COL6A1|p.R384Dfs*121|1|0.3|ENSG00000142156|chr21:45992036-45992036|G/-|frameshift_variant;COL6A1|p.E705Rfs*98|2|0.58|ENSG00000142156|chr21:46002260-46002260|G/-|frameshift_variant;ENSG00000142156|ENST00000361866|COL6A1	COL6A1|p.R384Dfs*121|1|0.3|ENSG00000142156|chr21:45992036-45992036|G/-|frameshift_variant	COL6A1|p.R384Dfs*121|1|0.3|ENSG00000142156|chr21:45992036-45992036|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	434.213975	866.413397	0.071614	3.1096E-05	0.21015	9.125E-05	0.28176	0.00012235	434.21398979181333	22.15	0.26032	21.765	21.635	21.896	-0.38503	0	0	NaN	46.921	13	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96940000			37607	529	24149	24272							-0.025153539246502987
VTDGKFTTV	9	Unmodified	_VTDGKFTTV_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	484.76031494140625	2	484.258382	966.502212	0.39258	0.00019011	0.282	0.00013656	0.67459	0.00032668	484.25838517807284	30.821	0.26017	30.821	30.659	30.919	0					8	4	3	0	0	0	0.094138	1	11335	11335		59.368	13.347	1	4166700			37608	1439	24150	24273	36190	36190					0.017620613150029385
VTDGKFTTV	9	Unmodified	_VTDGKFTTV_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	484.25811767578125	2	484.258382	966.502212	0.22077	0.00010691	-0.49759	-0.00024096	-0.27681	-0.00013405	484.2579347544867	31.112	0.20574	30.845	30.768	30.974	-0.26704					5	3	2	0	0	0	0.17423	1	11492	11492		43.982	4.0321	1	14887000			37609	1439	24150	24273	36191	36191					0.017620613150029385
VTDGKFTTV	9	Unmodified	_VTDGKFTTV_					0	0	0		FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant;FAT1|p.P4313Lfs*36|1|0.34|ENSG00000083857|chr4:186596602-186596602|G/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	FAT1|p.N3847Yfs*7|1|0.03|ENSG00000083857|chr4:186601370-186601371|-/TTATA|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	484.258382	966.502212	0.10379	5.0263E-05	-0.27537	-0.00013335	-0.17158	-8.3089E-05	484.25823293845417	31.241	0.20892	30.98	30.865	31.074	-0.26071	0.09844	-0.00014158	NaN	59.368	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2401400			37610	1439	24150	24273							0.017620613150029385
VTDGPGNYKY	10	Unmodified	_VTDGPGNYKY_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	HCT116MG_D190212_S1	1	557.2643432617188	2	557.264196	1112.51384	0.43699	0.00024352	0.034685	1.9329E-05	0.47167	0.00026285	557.2641588869932	27.565	0.51828	27.565	27.334	27.852	0					25	9	4	0	0	0	0.005658	1	9969	9969		165.72	107.04	1	90263000			37611	1500	24151	24274	36192	36192					-0.03791741661666492
VTDGPGNYKY	10	Unmodified	_VTDGPGNYKY_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	HCT116MG_D190212_S2	2	557.2643432617188	2	557.264196	1112.51384	0.36169	0.00020156	0.12632	7.0396E-05	0.48802	0.00027196	557.2642108883647	27.971	0.7222	27.629	27.295	28.017	-0.34189					36	13	5	0	0	0	0.0045823	1	10144	10144		168.54	109.86	1	364150000			37612	1500	24151	24274	36193	36193					-0.03791741661666492
VTDGPGNYKY	10	Unmodified	_VTDGPGNYKY_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	HCT116MG_D190212_S2	2	1113.5206298828125	1	1113.52112	1112.51384	0.55912	0.00062259	-0.37146	-0.00041363	0.18766	0.00020896	1113.520884016273	27.971	0.35992	27.629	27.398	27.758	-0.34201					11	6	2	0	0	0	0.0075788	1	10181	10181		160.69	116.83	1	33098000			37613	1500	24151	24274	36194	36194					-0.03791741661666492
VTDGPGNYKY	10	Unmodified	_VTDGPGNYKY_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	HCT116MG_D190212_S3	3	557.2642211914062	2	557.264196	1112.51384	0.44012	0.00024526	0.025283	1.409E-05	0.4654	0.00025935	557.264146752835	27.882	0.4681	27.693	27.465	27.933	-0.18847					20	8	3	0	0	0	0.0087358	1	10053	10053		155.95	97.275	1	36362000			37614	1500	24151	24274	36195	36195					-0.03791741661666492
VTDGPGNYKY	10	Unmodified	_VTDGPGNYKY_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MSMS	HCT116MG_D190212_S4	4	557.2645263671875	2	557.264196	1112.51384	0.31244	0.00017411	-0.089516	-4.9884E-05	0.22292	0.00012423	557.2643190446383	28.07	0.36383	27.738	27.544	27.908	-0.33138					15	6	3	0	0	0	0.71349	2	10079	10064;10079		19.257	19.257	1	6415500			37615	1500	24151	24274	36196;36197	36197					-0.03791741661666492
VTDGPGNYKY	10	Unmodified	_VTDGPGNYKY_					0	0	0		nc|ENSG00000088812|O75882-3|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN;ATRN|p.P984Lfs*34|1|0.23|ENSG00000088812|chr20:3584079-3584079|C/-|frameshift_variant	nc|ENSG00000088812|O75882-3|ATRN	nc|ENSG00000088812|O75882-3|ATRN	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1113.52112	1112.51384	0.59619	0.00066387	-1.1666	-0.001299	-0.5704	-0.00063515	1114.5227332661584	27.546	0.20618	27.546	27.438	27.644	0	-0.04113	-0.00080725	NaN	160.69	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2729500			37616	1500	24151	24274							-0.03791741661666492
VTDGSCQLFVY	11	Carbamidomethyl (C)	_VTDGSC(Carbamidomethyl (C))QLFVY_	VTDGSC(1)QLFVY		VTDGSC(58)QLFVY		0	1	0		SPINT2|p.G70Afs*10|1|0.04|ENSG00000167642|chr19:38283725-38283725|G/-|frameshift_variant;ENST00000590210.1_1_19:38755508-38778604:+|nuORF;ENSG00000167642|ENST00000301244|SPINT2	SPINT2|p.G70Afs*10|1|0.04|ENSG00000167642|chr19:38283725-38283725|G/-|frameshift_variant	SPINT2|p.G70Afs*10|1|0.04|ENSG00000167642|chr19:38283725-38283725|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	644.7980346679688	2	644.797546	1287.58054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.176	1	51.989	51.489	52.489	-0.18725								0	0	0	0.31808	1	20037	20037		57.722	42.884	1				37617	4942	24152	24275	36198	36198	25				-0.05174874162071319
VTDHLGVVYY	10	Unmodified	_VTDHLGVVYY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12;ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENSG00000148719|ENST00000444643|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MSMS	HCT116MG_D190212_S1	1	583.7669677734375	2	583.298039	1164.58152	0.46507	0.00027128	0.39559	0.00023075	0.86066	0.00050202	583.2981780395547	44.647	0.26082	44.647	44.464	44.724	0					10	4	3	0	0	0	0.037761	2	16892	16892;16898		96.285	60.158	1	32519000			37618	4031	24153	24276	36199;36200	36199					0.005817082691464748
VTDHLGVVYY	10	Unmodified	_VTDHLGVVYY_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12;ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENSG00000148719|ENST00000444643|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-MSMS	HCT116MG_D190212_S2	2	583.2984008789062	2	583.298039	1164.58152	0.75349	0.00043951	-0.26363	-0.00015377	0.48987	0.00028574	583.2978034355572	44.646	0.52222	44.561	44.376	44.899	-0.084797					17	9	3	0	0	0	0.16489	1	16961	16961		62.573	38.552	1	97460000			37619	4031	24153	24276	36201	36201					0.005817082691464748
VTDIHQLSF	9	Unmodified	_VTDIHQLSF_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MSMS	HCT116MG_D190212_S2	2	530.2764282226562	2	530.277106	1058.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.95	1	44.859	44.359	45.359	-0.091476								0	0	0	0.37224	1	17083	17083		34.932	8.6639	1				37620	4533	24154	24277	36202	36202					0.012731525806202626
VTDIHQLSF	9	Unmodified	_VTDIHQLSF_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-SECPEP	HCT116MG_D190212_S2	2	529.7144165039062	2	530.277106	1058.53966	0.63956	0.00033914	-0.48251	-0.00025586	0.15705	8.3279E-05	530.2767299212619	44.853	0.25871	44.768	44.588	44.846	-0.084797					6	4	2	0	0	0	0.07978	1	17034	17034		74.2	39.798	1	9413500			37621	4533	24154	24277	36203	36203					0.012731525806202626
VTDKFTESVY	10	Unmodified	_VTDKFTESVY_					0	0	0		ENST00000591398.1_1_19:19293380-19297824:-|nuORF;nc|ENSG00000254901|Q96FH0-2|BORCS8;ENSG00000254901|ENST00000462790|BORCS8;ENST00000602438.1_1_19:19260194-19302926:-|nuORF	ENST00000591398.1_1_19:19293380-19297824:-|nuORF	ENST00000591398.1_1_19:19293380-19297824:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	594.79248046875	2	594.792786	1187.57102	0.41671	0.00024786	-0.031882	-1.8963E-05	0.38483	0.00022889	594.7924776690816	36.677	0.20857	36.677	36.522	36.731	0					5	3	2	0	0	0	0.12401	1	13696	13696		69.338	40.851	1	9727600			37622	6599	24155	24278	36204	36204					-0.015263191759231631
VTDKFTESVY	10	Unmodified	_VTDKFTESVY_					0	0	0		ENST00000591398.1_1_19:19293380-19297824:-|nuORF;nc|ENSG00000254901|Q96FH0-2|BORCS8;ENSG00000254901|ENST00000462790|BORCS8;ENST00000602438.1_1_19:19260194-19302926:-|nuORF	ENST00000591398.1_1_19:19293380-19297824:-|nuORF	ENST00000591398.1_1_19:19293380-19297824:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	594.7925415039062	2	594.792786	1187.57102	0.71344	0.00042435	-0.67635	-0.00040229	0.037088	2.206E-05	594.7921871883547	36.691	0.25865	36.576	36.395	36.653	-0.11478					7	4	2	0	0	0	0.15757	1	13732	13732		63.227	25.052	1	36906000			37623	6599	24155	24278	36205	36205					-0.015263191759231631
VTDKKIAI	8	Unmodified	_VTDKKIAI_					0	0	0		UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant;nc|ENSG00000109814|O60701-3|UGDH;nc|ENSG00000109814|O60701-2|UGDH;UGDH|p.M432Nfs*20|1|0.29|ENSG00000109814|chr4:39503954-39503955|-/T|frameshift_variant;ENSG00000109814|ENST00000316423|UGDH	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	UGDH|p.V371Yfs*6|1|0.34|ENSG00000109814|chr4:39505298-39505298|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	444.28076171875	2	444.28166	886.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.456	1	47.334	46.834	47.834	-0.12175								0	0	0	0.8837	1	18103	18103		2.0598	0	1				37624	2221	24156	24279	36206	36206					0.10095545936940198
VTDKSMVDKY	10	Oxidation (M)	_VTDKSM(Oxidation (M))VDKY_		VTDKSM(1)VDKY		VTDKSM(160)VDKY	0	0	1		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S1	1	601.2919311523438	2	601.292096	1200.56964	0.38287	0.00023022	0.041658	2.5049E-05	0.42453	0.00025527	601.2919229099529	19.157	0.20814	19.157	19.027	19.235	0					8	3	3	0	0	0	0.0074721	1	6632	6632		160.97	99.612	1	10423000			37625	3433	24157	24280	36207	36207		81			-0.02262276536362151
VTDKSMVDKY	10	Oxidation (M)	_VTDKSM(Oxidation (M))VDKY_		VTDKSM(1)VDKY		VTDKSM(160)VDKY	0	0	1		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S2	2	601.2926025390625	2	601.292096	1200.56964	0.68022	0.00040901	0.060829	3.6576E-05	0.74105	0.00044559	601.2920412922377	19.752	0.36334	19.377	19.194	19.558	-0.37503					12	6	3	0	0	0	0.0074721	1	6872	6872		160.97	119.13	1	34959000			37626	3433	24157	24280	36208	36208		81			-0.02262276536362151
VTDKSMVDKY	10	Oxidation (M)	_VTDKSM(Oxidation (M))VDKY_		VTDKSM(1)VDKY		VTDKSM(46)VDKY	0	0	1		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MSMS	HCT116MG_D190212_S2	2	401.1970520019531	3	401.197156	1200.56964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.813	1	19.438	18.938	19.938	-0.37503								0	0	0	0.52718	1	6891	6891		46.34	28.768	1				37627	3433	24157	24280	36209	36209		81			-0.02262276536362151
VTDKSMVDKY	10	Oxidation (M)	_VTDKSM(Oxidation (M))VDKY_		VTDKSM(1)VDKY		VTDKSM(45)VDKY	0	0	1		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MSMS	HCT116MG_D190212_S4	4	601.2923583984375	2	601.292096	1200.56964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.245	1	19.059	18.559	19.559	-0.18674								0	0	0	0.55486	1	6514	6514		44.945	29.097	1				37628	3433	24157	24280	36210	36210		81			-0.02262276536362151
VTDKSMVDKY	10	Oxidation (M)	_VTDKSM(Oxidation (M))VDKY_					0	0	1		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	HCT116MG_D190212_S3	3		2	601.292096	1200.56964	0.55273	0.00033235	-0.16169	-9.7221E-05	0.39104	0.00023513	601.2921059201182	18.827	0.15626	18.896	18.771	18.927	0.069159	-0.24741	-0.00024536	NaN	160.97	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5840100			37629	3433	24157	24280				81			-0.02262276536362151
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S1	1	593.2946166992188	2	593.294639	1184.57472	0.62049	0.00036813	0.064799	3.8445E-05	0.68529	0.00040658	593.294562917545	24.892	0.31422	24.892	24.725	25.04	0					13	5	3	0	0	0	0.0097037	1	8920	8920		180.74	125.23	1	46321000			37630	3433	24157	24281	36211	36211					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S1	1	395.8655090332031	3	395.865518	1184.57472	-0.094546	-3.7427E-05	0.14721	5.8276E-05	0.052667	2.0849E-05	395.86554165135937	24.89	0.31422	24.89	24.725	25.04	0					9	5	2	0	0	0	0.039761	1	8939	8939		94.801	74.22	1	25047000			37631	3433	24157	24281	36212	36212					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S2	2	593.2947998046875	2	593.294639	1184.57472	0.66401	0.00039396	-0.12513	-7.4239E-05	0.53888	0.00031972	593.2945384279167	25.321	0.41703	24.945	24.816	25.233	-0.37521					23	7	4	0	0	0	0.013857	1	9114	9114		160.97	113.24	1	297860000			37632	3433	24157	24281	36213	36213					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S2	2	395.8653564453125	3	395.865518	1184.57472	0.063429	2.5109E-05	-0.22284	-8.8214E-05	-0.15941	-6.3105E-05	395.86538658042446	25.321	0.31277	24.945	24.816	25.129	-0.37521					16	5	4	0	0	0	0.024101	1	9118	9118		112.95	68.554	1	125140000			37633	3433	24157	24281	36214	36214					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S3	3	593.2945556640625	2	593.294639	1184.57472	0.69574	0.00041278	-0.25836	-0.00015328	0.43738	0.00025949	593.2944458317534	25.023	0.31291	24.917	24.787	25.1	-0.10618					14	5	4	0	0	0	0.01083	1	8916	8916		172.26	124.67	1	35623000			37634	3433	24157	24281	36215	36215					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S3	3	395.8654479980469	3	395.865518	1184.57472	0.060394	2.3908E-05	-0.042793	-1.694E-05	0.017601	6.9678E-06	395.86541957037326	25.023	0.31291	24.917	24.787	25.1	-0.10618					15	5	4	0	0	0	0.039761	1	8921	8921		94.801	72.026	1	32353000			37635	3433	24157	24281	36216	36216					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S4	4	395.8650207519531	3	395.865518	1184.57472	0.2514	9.952E-05	-0.62875	-0.0002489	-0.37735	-0.00014938	395.8651084122481	25.312	0.20806	25.032	24.902	25.11	-0.27958					6	3	2	0	0	0	0.39053	1	8974	8974		42.862	33.098	1	4950000			37636	3433	24157	24281	36217	36217					-0.010179726737305828
VTDKSMVDKY	10	Unmodified	_VTDKSMVDKY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	HCT116MG_D190212_S4	4	593.2951049804688	2	593.294639	1184.57472	1.0148	0.00060209	-0.36778	-0.0002182	0.64705	0.00038389	593.2944652488958	25.312	0.2601	25.032	24.902	25.162	-0.27958					6	4	2	0	0	0	0.64296	1	8990	8990		28.234	17.434	1	8362700			37637	3433	24157	24281	36218	36218					-0.010179726737305828
VTDLAGNEY	9	Unmodified	_VTDLAGNEY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	HCT116MG_D190212_S3	3	981.4534912109375	1	981.452367	980.445091	0.79895	0.00078414	0.18474	0.00018131	0.98369	0.00096545	981.4523112484774	34.18	0.26019	33.885	33.767	34.027	-0.29419					6	4	2	0	0	0	0.01389	1	12591	12591		103.75	52.893	1	3088000			37638	6118	24158	24282	36219	36219					-0.045914059613664904
VTDLLKELV	9	Unmodified	_VTDLLKELV_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2;ENST00000498819.1_1_9:91963122-91972225:+|nuORF	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	HCT116MG_D190212_S2	2	515.289794921875	2	515.313158	1028.61176	0.26503	0.00013657	0.38665	0.00019925	0.65168	0.00033582	515.8149160314302	55.643	0.15506	55.457	55.38	55.535	-0.18565					4	2	2	0	0	0	0.030311	1	21455	21455		103.82	18.552	1	16831000			37639	5956	24159	24283	36220	36220					0.098600669343341
VTDMSDAEQY	10	Unmodified	_VTDMSDAEQY_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	579.7344360351562	2	579.734611	1157.45467	0.37783	0.00021904	-0.10445	-6.0553E-05	0.27338	0.00015849	579.7346005758765	31.309	0.3134	31.048	30.917	31.231	-0.26071					7	5	2	0	0	0	0.78781	1	11471	11471		13.042	5.1323	1	2800500			37640	3009	24160	24284	36221	36221					-0.11776005738147433
VTDNRYKSKY	10	Unmodified	_VTDNRYKSKY_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;DIDO1|p.R726C|1|0.09|ENSG00000101191|chr20:62896271-62896271|G/A|missense_variant;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	HCT116MG_D190212_S2	2	637.3307495117188	2	637.330402	1272.64625	0.4877	0.00031083	0.16515	0.00010525	0.65285	0.00041608	637.3303980767048	17.25	0.26096	16.901	16.769	17.03	-0.34933					10	4	4	0	0	0	0.010446	1	5880	5880		146.48	104.53	1	27576000			37641	1760;676	24161	24285	36222	36222					0.020832830751487563
VTDNRYKSKY	10	Unmodified	_VTDNRYKSKY_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;DIDO1|p.R726C|1|0.09|ENSG00000101191|chr20:62896271-62896271|G/A|missense_variant;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	HCT116MG_D190212_S2	2	425.22259521484375	3	425.222693	1272.64625	0.091654	3.8973E-05	-0.14638	-6.2245E-05	-0.054728	-2.3272E-05	425.2224644588026	17.248	0.36515	16.899	16.665	17.03	-0.34933					15	6	4	0	0	0	0.13545	1	5883	5883		52.193	34.621	1	15489000			37642	1760;676	24161	24285	36223	36223					0.020832830751487563
VTDNRYKSKY	10	Unmodified	_VTDNRYKSKY_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;DIDO1|p.R726C|1|0.09|ENSG00000101191|chr20:62896271-62896271|G/A|missense_variant;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.P1738Hfs*126|1|0.39|ENSG00000101191|chr20:62880743-62880743|G/-|frameshift_variant;DIDO1|p.G1745Afs*119|1|0.26|ENSG00000101191|chr20:62880722-62880722|C/-|frameshift_variant;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1;DIDO1|p.S1285Afs*76|1|0.39|ENSG00000101191|chr20:62882104-62882104|G/-|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MATCH	HCT116MG_D190212_S1	1		2	637.330402	1272.64625	0.70325	0.0004482	0.46126	0.00029397	1.1645	0.00074217	637.3307640518567	16.655	0.15619	16.655	16.525	16.681	0	-0.12272	0.00034735	NaN	146.48	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3020100			37643	1760;676	24161	24285							0.020832830751487563
VTDPEKLNNY	10	Unmodified	_VTDPEKLNNY_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MSMS	HCT116MG_D190212_S1	1	596.7973022460938	2	596.79586	1191.57717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.322	1	29.322	28.822	29.822	0								0	0	0	0.0008775	1	10712	10712		143.21	72.08	1				37644	1963	24162	24286	36224	36224					-0.010958009444266281
VTDPEKLNNY	10	Unmodified	_VTDPEKLNNY_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	HCT116MG_D190212_S2	2	596.7962646484375	2	596.79586	1191.57717	0.96504	0.00057593	-0.24182	-0.00014432	0.72322	0.00043162	596.7955652807454	29.615	0.46495	29.314	29.082	29.547	-0.30095					14	8	2	0	0	0	0.0081677	1	10857	10857		159.1	87.967	1	56066000			37645	1963	24162	24286	36225	36225					-0.010958009444266281
VTDPEKLNNY	10	Unmodified	_VTDPEKLNNY_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	HCT116MG_D190212_S3	3	596.7963256835938	2	596.79586	1191.57717	0.74619	0.00044532	0.078547	4.6877E-05	0.82474	0.0004922	596.7958653384907	29.706	0.37078	29.469	29.292	29.662	-0.23655					15	6	3	0	0	0	0.0089527	1	10798	10798		154.75	89.518	1	10760000			37646	1963	24162	24286	36226	36226					-0.010958009444266281
VTDPEKLNNY	10	Unmodified	_VTDPEKLNNY_					0	0	0		nc|ENSG00000104885|Q8TEK3-1|DOT1L;ENSG00000104885|ENST00000398665|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	HCT116MG_D190212_S4	4	596.7964477539062	2	596.79586	1191.57717	1.0208	0.00060923	-0.068408	-4.0826E-05	0.95243	0.00056841	597.2968209612054	29.824	0.25995	29.475	29.293	29.553	-0.34921					7	4	2	0	0	0	0.13545	1	10803	10803		67.081	19.332	1	3307900			37647	1963	24162	24286	36227	36227					-0.010958009444266281
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;IGF2R|p.V768E|1|0.21|ENSG00000197081|chr6:160047865-160047865|T/A|missense_variant;IGF2R|p.D779N|1|0.38|ENSG00000197081|chr6:160047897-160047897|G/A|missense_variant	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	HCT116MG_D190212_S1	1	576.7742309570312	2	576.774593	1151.53463	0.34425	0.00019855	-0.19225	-0.00011088	0.152	8.767E-05	577.2761033999138	36.472	0.26225	36.472	36.312	36.574	0					7	4	2	0	0	0	0.15126	1	13616	13616		63.961	27.833	1	11087000			37648	6118	24163	24287	36228	36228					-0.03507196072655461
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;IGF2R|p.V768E|1|0.21|ENSG00000197081|chr6:160047865-160047865|T/A|missense_variant;IGF2R|p.D779N|1|0.38|ENSG00000197081|chr6:160047897-160047897|G/A|missense_variant	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	HCT116MG_D190212_S2	2	576.774169921875	2	576.774593	1151.53463	0.5122	0.00029542	-0.016406	-9.4624E-06	0.49579	0.00028596	576.7744365414347	36.534	0.41459	36.418	36.187	36.601	-0.1153					20	7	4	0	0	0	0.0045361	1	13654	13654		168.66	86.768	1	47507000			37649	6118	24163	24287	36229	36229					-0.03507196072655461
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;IGF2R|p.V768E|1|0.21|ENSG00000197081|chr6:160047865-160047865|T/A|missense_variant;IGF2R|p.D779N|1|0.38|ENSG00000197081|chr6:160047897-160047897|G/A|missense_variant	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	HCT116MG_D190212_S2	2	1152.541748046875	1	1152.54191	1151.53463	0.61079	0.00070396	0.25149	0.00028985	0.86228	0.00099381	1152.5419952848674	36.484	0.2595	36.356	36.226	36.486	-0.12799					8	4	2	0	0	0	0.011502	1	13667	13667		140.63	54.992	1	17071000			37650	6118	24163	24287	36230	36230					-0.03507196072655461
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;IGF2R|p.V768E|1|0.21|ENSG00000197081|chr6:160047865-160047865|T/A|missense_variant;IGF2R|p.D779N|1|0.38|ENSG00000197081|chr6:160047897-160047897|G/A|missense_variant	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	HCT116MG_D190212_S3	3	576.77490234375	2	576.774593	1151.53463	0.35487	0.00020468	0.1279	7.377E-05	0.48277	0.00027845	576.7745947728486	36.715	0.6244	36.414	36.093	36.717	-0.30113					22	11	4	0	0	0	0.012721	2	13557	13557;13655		137.42	68.319	1	16509000			37651	6118	24163	24287	36231;36232	36231					-0.03507196072655461
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.D1317Tfs*27|3|0.42|ENSG00000197081|chr6:160064456-160064456|G/-|frameshift_variant;IGF2R|p.D2163Tfs*2|1|0.16|ENSG00000197081|chr6:160089932-160089932|G/-|frameshift_variant;IGF2R|p.G2426Efs*10|1|0.25|ENSG00000197081|chr6:160104882-160104882|G/-|frameshift_variant;IGF2R|p.V768E|1|0.21|ENSG00000197081|chr6:160047865-160047865|T/A|missense_variant;IGF2R|p.D779N|1|0.38|ENSG00000197081|chr6:160047897-160047897|G/A|missense_variant	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	HCT116MG_D190212_S4	4	576.7750244140625	2	576.774593	1151.53463	0.40611	0.00023423	-0.11865	-6.8435E-05	0.28746	0.0001658	576.7745285039189	36.774	0.30901	36.389	36.23	36.539	-0.38486					9	5	2	0	0	0	0.076419	2	13461	13424;13461		78.728	28.795	1	5145700			37652	6118	24163	24287	36233;36234	36234					-0.03507196072655461
VTDQASHIY	9	Unmodified	_VTDQASHIY_					0	0	0		ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	517.2508544921875	2	517.251089	1032.48762	0.35628	0.00018429	0.19312	9.989E-05	0.5494	0.00028418	517.2509163324848	26.839	0.26074	26.839	26.709	26.97	0					9	4	3	0	0	0	0.020353	1	9739	9739		96.111	34.753	1	10815000			37653	8535	24164	24288	36235	36235					-0.027320108331196025
VTDQASHIY	9	Unmodified	_VTDQASHIY_					0	0	0		ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	517.2513427734375	2	517.251089	1032.48762	0.48021	0.00024839	0.43242	0.00022367	0.91262	0.00047206	517.2511074646424	27.293	0.36266	26.941	26.766	27.128	-0.35254					11	6	3	0	0	0	0.0045841	1	9917	9917		142.08	64.095	1	20637000			37654	8535	24164	24288	36236	36236					-0.027320108331196025
VTDQNKIVTY	10	Unmodified	_VTDQNKIVTY_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;POLD3|p.I262*|1|0.25|ENSG00000077514|chr11:74625453-74625453|A/-|frameshift_variant;POLD3|p.R300Gfs*8|2|0.38|ENSG00000077514|chr11:74625564-74625565|AA/-|frameshift_variant	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-MSMS	HCT116MG_D190212_S1	1	591.3158569335938	2	590.814053	1179.61355	0.71209	0.00042071	0.49008	0.00028954	1.2022	0.00071026	590.8143601580621	30.557	0.26004	30.557	30.399	30.659	0					6	4	2	0	0	0	0.014225	3	11228	11190;11228;11236		150.18	83.096	1	4226900			37655	1353	24165	24289	36237;36238;36239	36238					0.030930759523016604
VTDQNKIVTY	10	Unmodified	_VTDQNKIVTY_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF;POLD3|p.I262*|1|0.25|ENSG00000077514|chr11:74625453-74625453|A/-|frameshift_variant;POLD3|p.R300Gfs*8|2|0.38|ENSG00000077514|chr11:74625564-74625565|AA/-|frameshift_variant	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-MSMS	HCT116MG_D190212_S2	2	590.8143310546875	2	590.814053	1179.61355	0.50571	0.00029878	0.202	0.00011934	0.70771	0.00041812	590.814103036661	30.853	0.36325	30.586	30.456	30.819	-0.26704					10	6	2	0	0	0	0.31488	1	11388	11388		62.869	33.028	1	24692000			37656	1353	24165	24289	36240	36240					0.030930759523016604
VTDRCALMQI	10	Unmodified	_VTDRCALMQI_					0	0	0			REV__HFM1|p.K1137Hfs*4|1|0.1|ENSG00000162669|chr1:91277045-91277046|-/ATTTAAAGTG|frameshift_variant	REV__HFM1|p.K1137Hfs*4|1|0.1|ENSG00000162669|chr1:91277045-91277046|-/ATTTAAAGTG|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	575.2911376953125	2	575.291376	1148.5682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.024	1	42.024	41.524	42.524	0								0	0	0	0.93202	1	15839	15839		8.7454	0.58988	1		+		37657	12887	24166	24290	36241	36241					-0.00014189106104822713
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	HCT116MG_D190212_S1	1	442.22772216796875	3	441.893236	1322.65788	0.16659	7.3613E-05	0.31575	0.00013953	0.48233	0.00021314	442.2275376071829	26.231	0.26082	26.231	26.084	26.345	0					9	4	3	0	0	0	0.31179	1	9481	9481		52.735	39.2	1	9568700			37658	2572	24167	24291	36242	36242					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	HCT116MG_D190212_S1	1	662.335693359375	2	662.336215	1322.65788	0.83252	0.00055141	-0.78373	-0.00051909	0.048786	3.2313E-05	662.3355274801637	26.214	0.20869	26.214	26.084	26.293	0					6	3	2	0	0	0	0.50128	1	9491	9491		46.022	33.782	1	8779200			37659	2572	24167	24291	36243	36243					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	HCT116MG_D190212_S2	2	441.8931579589844	3	441.893236	1322.65788	0.062089	2.7437E-05	0.19498	8.6162E-05	0.25707	0.0001136	441.8932455199228	26.619	0.46932	26.258	26.076	26.545	-0.36164					16	8	4	0	0	0	0.032082	1	9633	9633		85.729	54.267	1	62458000			37660	2572	24167	24291	36244	36244					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	HCT116MG_D190212_S2	2	662.336669921875	2	662.336215	1322.65788	0.37238	0.00024664	0.20041	0.00013274	0.57279	0.00037938	662.3363006562304	26.619	0.31159	26.258	26.076	26.387	-0.36164					16	5	4	0	0	0	2.2481E-07	1	9642	9642		191.54	128.32	1	88017000			37661	2572	24167	24291	36245	36245					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	HCT116MG_D190212_S3	3	662.3358764648438	2	662.336215	1322.65788	0.85543	0.00056658	-0.22482	-0.00014891	0.63061	0.00041768	662.3360104816335	26.43	0.31257	26.281	26.098	26.411	-0.14924					14	5	4	0	0	0	5.2118E-08	1	9478	9478		196.06	136.69	1	25354000			37662	2572	24167	24291	36246	36246					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	HCT116MG_D190212_S3	3	441.893798828125	3	441.893236	1322.65788	0.26145	0.00011553	0.11135	4.9206E-05	0.3728	0.00016474	441.893174108129	26.43	0.4686	26.281	26.046	26.515	-0.14924					15	8	3	0	0	0	0.11221	1	9480	9480		74.077	55.737	1	26641000			37663	2572	24167	24291	36247	36247					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	HCT116MG_D190212_S4	4	441.8934326171875	3	441.893236	1322.65788	0.20707	9.1501E-05	0.24811	0.00010964	0.45518	0.00020114	441.8931373528522	26.667	0.51984	26.366	25.974	26.493	-0.30087					15	9	3	0	0	0	0.083997	1	9514	9514		77.867	54.852	1	11388000			37664	2572	24167	24291	36248	36248					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	HCT116MG_D190212_S4	4	662.337158203125	2	662.336215	1322.65788	0.58598	0.00038812	-0.090364	-5.9851E-05	0.49562	0.00032827	662.336098870356	26.664	0.36372	26.363	26.182	26.545	-0.30087					11	6	3	0	0	0	0.062695	1	9516	9516		96.034	63.249	1	9526300			37665	2572	24167	24291	36249	36249					0.009454800984940448
VTDSAALP	8	Unmodified	_VTDSAALP_					0	0	0			REV__ENSG00000235608|ENST00000422806|NKX1-1	REV__ENSG00000235608|ENST00000422806|NKX1-1	MSMS	HCT116MG_D190212_S3	3	387.204833984375	2	387.205618	772.396684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.408	1	30.158	29.658	30.658	-0.24946								0	0	0	0.8837	1	11080	11080		2.8892	0	1		+		37666	14332	24168	24292	36250	36250					0.001381451893735175
VTDSGPTFNY	10	Unmodified	_VTDSGPTFNY_					0	0	0		TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant;TOP2A|p.T1205Hfs*19|4|0.35|ENSG00000131747|chr17:40396390-40396390|T/-|frameshift_variant;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	TOP2A|p.K1199Efs*11|1|0.23|ENSG00000131747|chr17:40396408-40396409|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	552.0411987304688	2	550.748379	1099.4822	0.66075	0.00036391	0.8105	0.00044638	1.4713	0.00081029	550.748555861179	36.225	0.36233	36.097	35.864	36.226	-0.12799					17	6	4	0	0	0	0.71349	1	13511	13511		19.257	6.7254	1	24612000			37667	3154	24169	24293	36251	36251					-0.06355734415592451
VTDSIRDEY	9	Unmodified	_VTDSIRDEY_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MULTI-MSMS	HCT116MG_D190212_S1	1	549.2596435546875	2	549.259111	1096.50367	0.77226	0.00042417	-0.54228	-0.00029785	0.22998	0.00012632	549.2588680309211	28.772	0.31373	28.772	28.641	28.955	0					10	5	3	0	0	0	0.012531	1	10501	10501		107.1	54.831	1	11903000			37668	1488	24170	24294	36252	36252					-0.04072349386888163
VTDSIRDEY	9	Unmodified	_VTDSIRDEY_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MSMS	HCT116MG_D190212_S2	2	549.2590942382812	2	549.259111	1096.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.184	1	28.868	28.368	29.368	-0.31613								0	0	0	0.058768	1	10679	10679		67.838	19.492	1				37669	1488	24170	24294	36253	36253					-0.04072349386888163
VTDSIRDEY	9	Unmodified	_VTDSIRDEY_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MULTI-MSMS	HCT116MG_D190212_S3	3	549.25927734375	2	549.259111	1096.50367	0.5343	0.00029347	-0.58956	-0.00032382	-0.055257	-3.0351E-05	549.258861776855	29.19	0.20795	28.968	28.838	29.046	-0.22195					5	3	2	0	0	0	0.14376	1	10600	10600		49.527	21.898	1	5983100			37670	1488	24170	24294	36254	36254					-0.04072349386888163
VTDSIRDEY	9	Unmodified	_VTDSIRDEY_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MULTI-MATCH	HCT116MG_D190212_S2	2		2	549.259111	1096.50367	0.39569	0.00021734	0.20759	0.00011402	0.60328	0.00033136	549.2589649494208	29.102	0.20544	28.786	28.657	28.863	-0.31613	-0.055817	0.00077585	NaN	107.1	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20352000			37671	1488	24170	24294							-0.04072349386888163
VTDTGALY	8	Unmodified	_VTDTGALY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S2	2	839.41650390625	1	839.414525	838.407249	0.72616	0.00060955	0.13438	0.0001128	0.86054	0.00072235	839.4146888351025	35.554	0.4112	35.412	35.283	35.695	-0.14245					10	7	2	0	0	0	0.065436	1	13269	13269		106.85	20.724	1	109520000			37672	5494	24171	24295	36255	36255					-0.01841872156194313
VTDTGALYL	9	Unmodified	_VTDTGALYL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S2	2	952.4978637695312	1	952.498589	951.491313	0.31368	0.00029878	-0.38916	-0.00037067	-0.075484	-7.1898E-05	952.4978306057712	49.723	0.25463	49.559	49.432	49.686	-0.16369					7	4	2	0	0	0	0.031005	1	19069	19069		85.357	18.013	1	26286000			37673	5494	24172	24296	36256	36256					0.013626589406953826
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S1	1	1115.564453125	1	1115.56192	1114.55464	0.49931	0.00055701	0.18138	0.00020234	0.68069	0.00075935	1115.5622919338373	51.524	0.30314	51.524	51.349	51.652	0					11	5	3	0	0	0	0.026842	1	19690	19690		108	40.653	1	45757000			37674	5494	24173	24297	36257	36257					0.0019459965794794698
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S2	2	1115.5626220703125	1	1115.56192	1114.55464	0.62204	0.00069393	0.1519	0.00016945	0.77394	0.00086338	1115.5618557616976	51.736	0.61687	51.553	51.321	51.938	-0.18369					29	11	4	0	0	0	0.037761	1	19837	19837		96.285	28.941	1	215500000			37675	5494	24173	24297	36258	36258					0.0019459965794794698
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S2	2	558.28466796875	2	558.284597	1114.55464	0.44434	0.00024807	0.088225	4.9254E-05	0.53257	0.00029732	558.2844371070707	51.684	0.41087	51.501	51.373	51.784	-0.18369					16	7	3	0	0	0	0.079351	1	19860	19860		78.149	13.913	1	68143000			37676	5494	24173	24297	36259	36259					0.0019459965794794698
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S3	3	1115.5623779296875	1	1115.56192	1114.55464	0.37927	0.00042309	0.55575	0.00061997	0.93501	0.0010431	1115.5622567391736	51.929	0.49437	51.62	51.436	51.931	-0.30927					22	9	3	0	0	0	0.026842	1	19605	19605		108	40.653	1	61193000			37677	5494	24173	24297	36260	36260					0.0019459965794794698
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MSMS	HCT116MG_D190212_S3	3	558.2848510742188	2	558.284597	1114.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.934	1	51.624	51.124	52.124	-0.30927								0	0	0	0.16943	1	19620	19620		71.134	6.8973	1				37678	5494	24173	24297	36261	36261					0.0019459965794794698
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF;WDR6|p.P488Qfs*55|1|0.32|ENSG00000178252|chr3:49012993-49012993|C/-|frameshift_variant;WDR6|p.R808Afs*3|1|0.34|ENSG00000178252|chr3:49013948-49013949|-/G|frameshift_variant;WDR6|p.R808Gfs*33|2|0.31|ENSG00000178252|chr3:49013949-49013949|G/-|frameshift_variant;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	HCT116MG_D190212_S4	4	1115.5623779296875	1	1115.56192	1114.55464	0.51608	0.00057571	0.2926	0.00032641	0.80867	0.00090212	1115.5619378340425	51.942	0.41251	51.597	51.415	51.827	-0.34538					11	7	2	0	0	0	0.026842	1	19358	19358		108	40.653	1	17491000			37679	5494	24173	24297	36262	36262					0.0019459965794794698
VTEAPEENFP	10	Unmodified	_VTEAPEENFP_					0	0	0			REV__PLEKHM2|p.Q373Rfs*22|1|0.57|ENSG00000116786|chr1:15727184-15727184|C/-|frameshift_variant	REV__PLEKHM2|p.Q373Rfs*22|1|0.57|ENSG00000116786|chr1:15727184-15727184|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	566.7601928710938	2	566.761486	1131.50842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.852	1	26.852	26.352	27.352	0								0	0	0	0.34824	1	9719	9719		56.177	4.5472	1		+		37680	11594	24174	24298	36263	36263					-0.0520746524414335
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant;PYROXD1|p.P283Qfs*20|1|0.11|ENSG00000121350|chr12:21461117-21461117|T/-|frameshift_variant;nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENSG00000121350|ENST00000240651|PYROXD1	PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant	PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	581.2622680664062	2	581.262185	1160.50982	0.53521	0.0003111	0.17822	0.00010359	0.71343	0.00041469	581.2623038880978	22.298	0.36545	22.298	22.115	22.481	0					17	6	4	0	0	0	0.012721	1	7878	7878		137.42	97.474	1	86271000			37681	2731	24175	24299	36264	36264					-0.06401831155380933
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant;PYROXD1|p.P283Qfs*20|1|0.11|ENSG00000121350|chr12:21461117-21461117|T/-|frameshift_variant;nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENSG00000121350|ENST00000240651|PYROXD1	PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant	PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	581.2623901367188	2	581.262185	1160.50982	0.49529	0.00028789	0.084555	4.9149E-05	0.57984	0.00033704	581.2622150595568	22.721	0.25992	22.336	22.206	22.466	-0.3852					14	4	4	0	0	0	0.0066829	2	8064	8053;8064		163.04	121.2	1	173610000			37682	2731	24175	24299	36265;36266	36266					-0.06401831155380933
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant;PYROXD1|p.P283Qfs*20|1|0.11|ENSG00000121350|chr12:21461117-21461117|T/-|frameshift_variant;nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENSG00000121350|ENST00000240651|PYROXD1	PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant	PYROXD1|p.K278Efs*2|1|0.05|ENSG00000121350|chr12:21461105-21461106|-/GAAT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1161.5166015625	1	1161.51709	1160.50982	0.50257	0.00058375	0.078805	9.1534E-05	0.58138	0.00067528	1161.5169475919156	22.721	0.2082	22.336	22.258	22.466	-0.3852					5	3	2	0	0	0	0.0026164	1	8090	8090		173.69	133.73	1	13260000			37683	2731	24175	24299	36267	36267					-0.06401831155380933
VTEEDQISY	9	Unmodified	_VTEEDQISY_					0	0	0		PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant;PHF3|p.F1399Lfs*30|1|0.31|ENSG00000118482|chr6:63711780-63711780|T/-|frameshift_variant;nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*10|2|0.05|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3	PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant	PHF3|p.N1400*|1|0.17|ENSG00000118482|chr6:63711779-63711780|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	542.2461547851562	2	542.245669	1082.47678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.424	1	34.129	33.629	34.629	-0.29419								0	0	0	0.49326	1	12670	12670		29.082	13.234	1				37684	2608	24176	24300	36268	36268					-0.06115457998066631
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S1	1	1111.5322265625	1	1111.53062	1110.52334	0.47142	0.000524	-0.027947	-3.1064E-05	0.44347	0.00049293	1111.5304719882554	44.384	0.26814	44.384	44.195	44.464	0					9	4	3	0	0	0	0.007119	1	16791	16791		120.45	46.028	1	24833000			37685	4080	24177	24301	36269	36269					-0.02749973376126036
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S1	1	556.2693481445312	2	556.268947	1110.52334	0.32279	0.00017956	0.35393	0.00019688	0.67671	0.00037643	556.2688550226989	44.384	0.26814	44.384	44.195	44.464	0					10	4	3	0	0	0	0.012168	1	16794	16794		108	43.761	1	27987000			37686	4080	24177	24301	36270	36270					-0.02749973376126036
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S2	2	1111.531982421875	1	1111.53062	1110.52334	0.64172	0.00071329	0.17324	0.00019256	0.81495	0.00090584	1111.5308166486602	44.436	0.47309	44.351	44.115	44.588	-0.084797					16	8	3	0	0	0	0.0054498	1	16884	16884		133.7	59.279	1	55524000			37687	4080	24177	24301	36271	36271					-0.02749973376126036
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S2	2	556.2694702148438	2	556.268947	1110.52334	0.40489	0.00022523	0.35003	0.00019471	0.75492	0.00041994	556.2690620662761	44.462	0.42033	44.377	44.115	44.535	-0.084797					14	7	3	0	0	0	0.0090481	1	16887	16887		115.69	51.456	1	43917000			37688	4080	24177	24301	36272	36272					-0.02749973376126036
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S3	3	1111.531494140625	1	1111.53062	1110.52334	0.66711	0.00074151	-0.2937	-0.00032646	0.37341	0.00041505	1111.530082133401	44.685	0.26702	44.376	44.265	44.532	-0.3087					15	8	2	0	0	0	0.007119	1	16702	16702		120.45	46.028	1	16566000			37689	4080	24177	24301	36273	36273					-0.02749973376126036
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S3	3	556.2691650390625	2	556.268947	1110.52334	0.67591	0.00037599	0.23211	0.00012912	0.90803	0.00050511	556.2689205781091	44.685	0.30678	44.376	44.225	44.532	-0.30871					20	9	3	0	0	0	0.0054498	1	16703	16703		133.7	69.466	1	23234000			37690	4080	24177	24301	36274	36274					-0.02749973376126036
VTEFEDIKSGY	11	Unmodified	_VTEFEDIKSGY_					0	0	0		ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;nc|ENSG00000119335|Q01105|SET;ENST00000437270.1_1_9:140535772-140535991:-|nuORF;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	ENSG00000119335|ENST00000322030|SET;ENSG00000230667|ENST00000596516|SETSIP	ENSG00000119335|ENST00000322030|SET	MULTI-SECPEP	HCT116MG_D190212_S1	1	644.3079833984375	2	644.3088	1286.60305	0.16916	0.00010899	-1.3841	-0.00089182	-1.215	-0.00078283	644.3079291716247	38.67	0.31211	38.67	38.436	38.748	0					6	5	2	0	0	0	0.01046	1	14506	14506		101.54	46.77	1	23843000			37691	2635;6501	24178	24302	36275	36275					-0.028789514928121207
VTEFEDIKSGY	11	Unmodified	_VTEFEDIKSGY_					0	0	0		ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;nc|ENSG00000119335|Q01105|SET;ENST00000437270.1_1_9:140535772-140535991:-|nuORF;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	ENSG00000119335|ENST00000322030|SET;ENSG00000230667|ENST00000596516|SETSIP	ENSG00000119335|ENST00000322030|SET	MULTI-MSMS	HCT116MG_D190212_S2	2	644.3073120117188	2	644.3088	1286.60305	0.53335	0.00034364	0.074295	4.7869E-05	0.60764	0.00039151	644.3085673839158	38.673	0.36896	38.588	38.437	38.806	-0.084618					12	6	3	0	0	0	0.002302	1	14542	14542		150.18	90.808	1	38969000			37692	2635;6501	24178	24302	36276	36276					-0.028789514928121207
VTEFEDIKSGY	11	Unmodified	_VTEFEDIKSGY_					0	0	0		ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;nc|ENSG00000119335|Q01105|SET;ENST00000437270.1_1_9:140535772-140535991:-|nuORF;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP	ENSG00000119335|ENST00000322030|SET;ENSG00000230667|ENST00000596516|SETSIP	ENSG00000119335|ENST00000322030|SET	MULTI-MSMS	HCT116MG_D190212_S3	3	644.809814453125	2	644.3088	1286.60305	0.50015	0.00032225	-1.7411	-0.0011218	-1.241	-0.00079958	644.8092765014543	38.912	0.36373	38.611	38.456	38.82	-0.30137					9	6	2	0	0	0	0.18623	1	14450	14450		77.049	31.028	1	4036600			37693	2635;6501	24178	24302	36277	36277					-0.028789514928121207
VTEGVIVPE	9	Unmodified	_VTEGVIVPE_					0	0	0		ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant;ZNF711|p.H694Tfs*14|3|0.25|ENSG00000147180|chrX:85271614-85271615|-/A|frameshift_variant;nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711	ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	ZNF711|p.F514Lfs*5|1|0.07|ENSG00000147180|chrX:85271084-85271085|TC/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	942.5145263671875	1	942.514239	941.506963	0.88947	0.00083834	-0.17797	-0.00016774	0.71149	0.00067059	942.5139305998433	52.148	0.25831	51.96	51.832	52.09	-0.18725					7	4	2	0	0	0	0.33687	1	20058	20058		26.884	3.7352	1	10338000			37694	3977	24179	24303	36278	36278					0.033869454577597935
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	555.7694091796875	2	555.769311	1109.52407	0.4253	0.00023637	-0.011293	-6.2762E-06	0.41401	0.00023009	555.7692592769105	26.787	0.41638	26.787	26.657	27.073	0					22	7	4	0	0	0	0.0034297	1	9694	9694		159.1	84.172	1	181580000			37695	6105	24180	24304	36279	36279					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	1110.5318603515625	1	1110.53135	1109.52407	0.56715	0.00062984	0.041117	4.5662E-05	0.60827	0.0006755	1110.5312172554868	26.787	0.31288	26.787	26.657	26.97	0					6	5	2	0	0	0	2.7271E-05	1	9718	9718		211.85	108.5	1	6356000			37696	6105	24180	24304	36280	36280					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	555.7695922851562	2	555.769311	1109.52407	0.48859	0.00027154	0.035357	1.965E-05	0.52395	0.00029119	555.7693052190881	27.197	0.52102	26.845	26.659	27.18	-0.35254					29	9	5	0	0	0	0.0036431	1	9848	9848		155.95	81.025	1	542620000			37697	6105	24180	24304	36281	36281					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1110.531982421875	1	1110.53135	1109.52407	0.72741	0.00080781	0.0045249	5.0251E-06	0.73193	0.00081283	1110.5311010818114	27.18	0.31539	26.827	26.659	26.975	-0.35254					10	5	3	0	0	0	9.6409E-15	1	9869	9869		258.17	142.47	1	45921000			37698	6105	24180	24304	36282	36282					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	555.7694091796875	2	555.769311	1109.52407	0.42643	0.00023699	0.092647	5.149E-05	0.51907	0.00028848	555.7692738789004	27.055	0.52089	26.885	26.703	27.224	-0.16933					27	9	5	0	0	0	0.0035417	1	9735	9735		171.46	86.192	1	179690000			37699	6105	24180	24304	36283	36283					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1110.5325927734375	1	1110.53135	1109.52407	0.41482	0.00046067	0.24133	0.000268	0.65615	0.00072867	1110.5317058346723	27.055	0.26066	26.885	26.755	27.016	-0.16933					6	4	2	0	0	0	7.3251E-11	1	9756	9756		241.96	115.39	1	7162700			37700	6105	24180	24304	36284	36284					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	FLNA|p.R2520Vfs*16|1|0.7|ENSG00000196924|chrX:154349560-154349560|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	555.7692260742188	2	555.769311	1109.52407	0.44604	0.00024789	0.079132	4.3979E-05	0.52517	0.00029187	555.7692109211816	27.236	0.3637	26.925	26.742	27.106	-0.3114					17	6	4	0	0	0	0.0035136	2	9724	9724;9795		168.54	86.647	1	38007000			37701	6105	24180	24304	36285;36286	36285					-0.02631178727074257
VTEIMSMGY	9	Unmodified	_VTEIMSMGY_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MSMS	HCT116MG_D190212_S1	1	1030.4603271484375	1	1030.45838	1029.4511	0.68518	0.00070605	0.22103	0.00022776	0.90621	0.00093381	1030.4582470489531	48.537	0.20609	48.537	48.408	48.614	0					5	3	2	0	0	0	0.031005	1	18488	18488		85.357	18.013	1	16397000			37702	2631	24181	24305	36287	36287					-0.06244347045685572
VTEKDLLLY	9	Unmodified	_VTEKDLLLY_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	MULTI-MSMS	HCT116MG_D190212_S2	2	547.310791015625	2	547.310615	1092.60668	0.60167	0.0003293	-0.23106	-0.00012646	0.37061	0.00020284	547.3104393292707	48.562	0.35525	48.419	48.286	48.642	-0.1437					16	6	3	0	0	0	0.02327	1	18559	18559		93.166	22.834	1	264580000			37703	5032	24182	24306	36288	36288					0.06407763071729278
VTEKDLLLY	9	Unmodified	_VTEKDLLLY_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	MULTI-MSMS	HCT116MG_D190212_S3	3	547.3107299804688	2	547.310615	1092.60668	0.74057	0.00040532	-0.093686	-5.1275E-05	0.64688	0.00035405	547.3104174147893	48.842	0.36248	48.526	48.348	48.71	-0.31596					20	6	4	0	0	0	0.014023	1	18361	18361		103.42	14.019	1	61659000			37704	5032	24182	24306	36289	36289					0.06407763071729278
VTEKDLLLY	9	Unmodified	_VTEKDLLLY_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	MULTI-MSMS	HCT116MG_D190212_S4	4	547.8124389648438	2	547.310615	1092.60668	0.35802	0.00019595	-0.34356	-0.00018803	0.014466	7.9175E-06	547.3102242218927	48.904	0.2513	48.539	48.408	48.659	-0.365					14	6	3	0	0	0	0.051033	1	18116	18116		74.2	8.9646	1	21403000			37705	5032	24182	24306	36290	36290					0.06407763071729278
VTEKERDLP	9	Unmodified	_VTEKERDLP_					0	0	0			REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	MULTI-SECPEP	HCT116MG_D190212_S3	3	544.248291015625	2	543.793121	1085.57169	0.41178	0.00022392	-0.42035	-0.00022858	-0.0085635	-4.6568E-06	543.792954236788	36.888	0.31179	36.587	36.405	36.717	-0.30113					8	5	2	0	0	0	0.25004	1	13599	13599		10.824	4.1008	1	2496400	+		37706	17311	24183	24307	36291	36291					0.032325202637593975
VTEKVYADTG	10	Unmodified	_VTEKVYADTG_					0	0	0		ENST00000312814.10_1_7:112430370-112430523:-|nuORF	ENST00000312814.10_1_7:112430370-112430523:-|nuORF	ENST00000312814.10_1_7:112430370-112430523:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7722778320312	2	541.771854	1081.52915	0.44378	0.00024043	0.34964	0.00018943	0.79343	0.00042986	541.7719295084839	22.929	0.31198	22.544	22.414	22.726	-0.3852					9	5	2	0	0	0	0.017397	1	8149	8149		143.21	71.291	1	57932000			37707	7069	24184	24308	36292	36292					-0.0083487486449485
VTELHVISY	9	Unmodified	_VTELHVISY_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	530.7883911132812	2	530.787307	1059.56006	0.12693	6.7371E-05	0.30337	0.00016102	0.43029	0.00022839	530.7875238446899	42.567	0.25562	42.567	42.435	42.69	0					10	4	3	0	0	0	0.0036294	1	16074	16074		156.16	90.921	1	44251000			37708	5305	24185	24309	36293	36293					0.032663232404502196
VTELHVISY	9	Unmodified	_VTELHVISY_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	530.7869873046875	2	530.787307	1059.56006	0.68247	0.00036224	-0.26248	-0.00013932	0.41999	0.00022293	530.7870612651935	42.576	0.36435	42.506	42.325	42.689	-0.069984					16	6	4	0	0	0	0.0034749	1	16121	16121		164.52	90.092	1	114340000			37709	5305	24185	24309	36294	36294					0.032663232404502196
VTELHVISY	9	Unmodified	_VTELHVISY_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	530.7871704101562	2	530.787307	1059.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.919	1	42.614	42.114	43.114	-0.30472								0	0	0	0.59795	1	16003	16003		24.021	3.5669	1				37710	5305	24185	24309	36295	36295					0.032663232404502196
VTELHVISY	9	Unmodified	_VTELHVISY_					0	0	0		RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	RNF213|p.C5022Lfs*7|1|0.3|ENSG00000173821|chr17:80389237-80389237|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	530.787307	1059.56006	0.54025	0.00028676	-0.37651	-0.00019985	0.16374	8.6909E-05	530.7871289377013	42.838	0.15604	42.534	42.404	42.56	-0.30472	-0.0018686	-0.00033847	NaN	164.52	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3090000			37711	5305	24185	24309							0.032663232404502196
VTERWKPFLYR	11	Unmodified	_VTERWKPFLYR_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168;TMEM168|p.T574Nfs*5|1|0.09|ENSG00000146802|chr7:112767570-112767571|-/T|frameshift_variant;TMEM168|p.I279Yfs*8|1|0.35|ENSG00000146802|chr7:112783991-112783992|-/A|frameshift_variant	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MSMS	HCT116MG_D190212_S3	3	747.9130249023438	2	747.914436	1493.81432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.652	1	45.341	44.841	45.841	-0.31094								0	0	0	0.95954	1	17098	17098		1.3295	0.13619	1				37712	3960	24186	24310	36296	36296					0.08716390059612422
VTESPAKFALY	11	Unmodified	_VTESPAKFALY_					0	0	0		ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	MULTI-MSMS	HCT116MG_D190212_S1	1	613.3279418945312	2	613.326796	1224.63904	0.57118	0.00035032	0.96431	0.00059144	1.5355	0.00094176	613.327455682737	45.747	0.31502	45.747	45.555	45.87	0					16	5	4	0	0	0	0.033511	1	17334	17334		139.38	85.545	1	35974000			37713	4178	24187	24311	36297	36297					0.03570550474705669
VTESPAKFALY	11	Unmodified	_VTESPAKFALY_					0	0	0		ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	MULTI-MSMS	HCT116MG_D190212_S2	2	613.3267211914062	2	613.326796	1224.63904	0.42449	0.00026035	-0.089233	-5.4729E-05	0.33526	0.00020562	613.3266236996552	45.766	0.46121	45.665	45.402	45.863	-0.1014					17	8	3	0	0	0	0.02807	1	17401	17401		150.62	150.62	1	135610000			37714	4178	24187	24311	36298	36298					0.03570550474705669
VTETEEIEY	9	Unmodified	_VTETEEIEY_					0	0	0			REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF	REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MSMS	HCT116MG_D190212_S4	4	556.7532958984375	2	556.753327	1111.4921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.737	1	40.359	39.859	40.859	-0.37828								0	0	0	0.768	1	14957	14957		7.9102	0	1		+		37715	11746	24188	24312	36299	36299					-0.059185912008842934
VTETVHTSY	9	Unmodified	_VTETVHTSY_					0	0	0		ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	MULTI-MSMS	HCT116MG_D190212_S1	1	518.7512817382812	2	518.750921	1035.48729	0.54114	0.00028072	0.5551	0.00028796	1.0962	0.00056867	518.7509908161134	24.595	0.31358	24.595	24.464	24.778	0					6	5	2	0	0	0	0.031005	1	8819	8819		85.357	39.657	1	8222400			37716	6028	24189	24313	36300	36300					-0.029034305529876292
VTETVHTSY	9	Unmodified	_VTETVHTSY_					0	0	0		ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	MULTI-MATCH	HCT116MG_D190212_S2	2		2	518.750921	1035.48729	0.35295	0.0001831	0.55664	0.00028876	0.90959	0.00047185	518.7512117447716	25.009	0.20764	24.633	24.504	24.712	-0.37521	0.019413	3.0914E-07	NaN	85.357	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11532000			37717	6028	24189	24313							-0.029034305529876292
VTEVHSQIY	9	Unmodified	_VTEVHSQIY_					0	0	0			REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	538.2747192382812	2	538.274564	1074.53457	0.58601	0.00031543	-0.26748	-0.00014398	0.31853	0.00017145	538.2743939340205	36.561	0.25874	36.447	36.292	36.55	-0.11478					11	4	3	0	0	0	0.14171	1	13670	13670		49.933	11.757	1	18555000	+		37718	9995	24190	24314	36301	36301					0.0002884871801143163
VTEVHSQIY	9	Unmodified	_VTEVHSQIY_					0	0	0			REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	537.7455444335938	2	538.274564	1074.53457	0.58601	0.00031543	-0.26748	-0.00014398	0.31853	0.00017145	538.2743939340205	36.561	0.25874	36.447	36.292	36.55	-0.11478					11	4	3	0	0	0	0.24169	1	13630	13630		20.415	7.3721	1	18555000	+		37719	9995	24190	24314	36302	36302					0.0002884871801143163
VTEVHSQIY	9	Unmodified	_VTEVHSQIY_					0	0	0			REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	538.2742309570312	2	538.274564	1074.53457	0.38604	0.00020779	-0.37382	-0.00020122	0.012222	6.5788E-06	538.2743205384537	36.732	0.20799	36.431	36.301	36.509	-0.30113					6	3	2	0	0	0	0.26536	1	13613	13613		34.402	8.1336	1	6063900	+		37720	9995	24190	24314	36303	36303					0.0002884871801143163
VTEVHSQIY	9	Unmodified	_VTEVHSQIY_					0	0	0			REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	538.274564	1074.53457	0.38604	0.00020779	-0.37382	-0.00020122	0.012222	6.5788E-06	538.2743205384537	36.732	0.20799	36.431	36.301	36.509	-0.30113	-0.015072	-4.9249E-05	NaN	49.933	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6063900	+		37721	9995	24190	24314							0.0002884871801143163
VTEVHSQIY	9	Unmodified	_VTEVHSQIY_					0	0	0			REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	REV__ASTN2|p.R1289H|1|0.39|ENSG00000148219|chr9:116426005-116426005|C/T|missense_variant	MULTI-MATCH	HCT116MG_D190212_S4	4		2	538.274564	1074.53457	0.42899	0.00023091	-0.8316	-0.00044763	-0.40261	-0.00021671	538.2743335917213	36.846	0.20752	36.461	36.383	36.591	-0.38486	0.014744	-0.00054208	NaN	49.933	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2486200	+		37722	9995	24190	24314							0.0002884871801143163
VTFHAGLG	8	Unmodified	_VTFHAGLG_					0	0	0			REV__ENSG00000168569|ENST00000307366|TMEM223	REV__ENSG00000168569|ENST00000307366|TMEM223	MSMS	HCT116MG_D190212_S4	4	401.2170715332031	2	401.216321	800.418088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.138	1	58.861	58.361	59.361	-0.27731								0	0	0	0.8837	1	22247	22247		2.3027	0	1		+		37723	13206	24191	24315	36304	36304					0.009895750087594024
VTGAAGFS	8	Unmodified	_VTGAAGFS_					0	0	0			REV__ENST00000527461.5_1_12:123007437-123011480:-|nuORF	REV__ENST00000527461.5_1_12:123007437-123011480:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	709.351806640625	1	709.351531	708.344254	0.93061	0.00066013	-0.108	-7.6612E-05	0.82261	0.00058352	709.3514044904886	23.193	0.46734	22.808	22.622	23.089	-0.3852					13	8	3	0	0	0	0.23195	1	8257	8257		67.344	17.675	1	36222000	+		37724	16287	24192	24316	36305	36305					-0.02158393153581528
VTGGRRDP	8	Unmodified	_VTGGRRDP_					0	0	0		ENSG00000026508|ENST00000428726|CD44;nc|ENSG00000026508|P16070-5|CD44;nc|ENSG00000026508|P16070-7|CD44;nc|ENSG00000026508|P16070-3|CD44;nc|ENSG00000026508|P16070-4|CD44;nc|ENSG00000026508|P16070-6|CD44;nc|ENSG00000026508|P16070-17|CD44;nc|ENSG00000026508|P16070-16|CD44;nc|ENSG00000026508|P16070-9|CD44;nc|ENSG00000026508|P16070-10|CD44;nc|ENSG00000026508|P16070-11|CD44	ENSG00000026508|ENST00000428726|CD44	ENSG00000026508|ENST00000428726|CD44	MULTI-MSMS	HCT116MG_D190212_S2	2	429.2333068847656	2	429.233033	856.451513	0.20232	8.6843E-05	-0.058042	-2.4913E-05	0.14428	6.193E-05	429.2329087023052	34.325	0.77626	34.15	33.864	34.641	-0.17512					20	14	2	0	0	0	0.79834	1	12965	12965		11.64	0	1	115110000			37725	957	24193	24317	36306	36306					0.01754576780649586
VTGIRKRERL	10	Unmodified	_VTGIRKRERL_					0	0	0			REV__nc|ENSG00000074603|Q6V1X1-4|DPP8	REV__nc|ENSG00000074603|Q6V1X1-4|DPP8	MSMS	HCT116MG_D190212_S1	1	614.38525390625	2	614.385845	1226.75714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.069	1	53.069	52.569	53.569	0								0	0	0	0.95507	1	20315	20315		3.5965	0.60125	1		+		37726	10800	24194	24318	36307	36307					0.15282967573875794
VTGIWTTWP	9	Unmodified	_VTGIWTTWP_					0	0	0			REV__ENST00000590427.1_1_2:223183467-223206961:+|nuORF	REV__ENST00000590427.1_1_2:223183467-223206961:+|nuORF	MSMS	HCT116MG_D190212_S3	3	530.7761840820312	2	530.776742	1059.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.917	1	54.624	54.124	55.124	-0.29288								0	0	0	0.768	1	20820	20820		7.9102	0.62092	1		+		37727	16685	24195	24319	36308	36308					0.011543579315457464
VTGKKEDYIV	10	Unmodified	_VTGKKEDYIV_					0	0	0			REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	MULTI-MSMS	HCT116MG_D190212_S3	3	576.31689453125	2	576.318971	1150.62339	0.63764	0.00036748	-0.5448	-0.00031398	0.09284	5.3506E-05	576.3184173316824	27.679	0.4159	27.491	27.361	27.777	-0.18847					12	7	3	0	0	0	0.78781	1	9989	9989		13.042	0	1	17718000	+		37728	12996	24196	24320	36309	36309					0.054102639576512956
VTGKPAKP	8	Unmodified	_VTGKPAKP_					0	0	0			REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	REV__XIRP2|p.N2647Ifs*6|2|0.26|ENSG00000163092|chr2:167249851-167249851|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	400.25390625	2	399.247621	796.480688	-0.020232	-8.0778E-06	-0.29428	-0.00011749	-0.31451	-0.00012557	399.24623600588853	45.478	1.1473	45.478	44.931	46.079	0					46	21	3	0	0	0	0.87635	1	17385	17385		0.69038	0	1	47396000	+		37729	12909	24197	24321	36310	36310					0.07430721076946156
VTGLDIWAS	9	Unmodified	_VTGLDIWAS_					0	0	0		ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	MSMS	HCT116MG_D190212_S3	3	481.2536926269531	2	481.2531	960.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.127	1	19.196	18.696	19.696	0.069159								0	0	0	0.76575	1	6540	6540		15.847	1.0089	1				37730	2019	24198	24322	36311	36311					0.009820786605587273
VTGLGPRR	8	Unmodified	_VTGLGPRR_					0	0	0			REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	REV__AGO4|p.E724Kfs*16|1|0.24|ENSG00000134698|chr1:35841744-35841745|AG/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	428.2615966796875	2	428.261594	854.508634	-0.11071	-4.7412E-05	-1.1279	-0.00048305	-1.2386	-0.00053046	428.2610169272498	48.793	0.51614	48.793	48.563	49.079	0					30	9	4	0	0	0	0.82475	1	18541	18541		8.5933	0	1	959370000	+		37731	9887	24199	24323	36312	36312					0.0755604405703707
VTGLIVDL	8	Unmodified	_VTGLIVDL_					0	0	0			REV__ENST00000497856.6_1_5:112214403-112214505:-|nuORF	REV__ENST00000497856.6_1_5:112214403-112214505:-|nuORF	MSMS	HCT116MG_D190212_S3	3	415.253662109375	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.266	1	46.951	46.451	47.451	-0.31525								0	0	0	0.8837	1	17745	17745		9.3474	0	1		+		37732	16102	24200	24324	36313	36313					0.07456168154271836
VTGLIVDL	8	Unmodified	_VTGLIVDL_					0	0	0			REV__ENST00000497856.6_1_5:112214403-112214505:-|nuORF	REV__ENST00000497856.6_1_5:112214403-112214505:-|nuORF	MSMS	HCT116MG_D190212_S4	4	415.25408935546875	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.414	1	54.091	53.591	54.591	-0.32349								0	0	0	0.8837	1	20345	20345		5.2307	0	1		+		37733	16102	24200	24324	36314	36314					0.07456168154271836
VTGLKPKI	8	Unmodified	_VTGLKPKI_					0	0	0			REV__DCLK2|p.V199G|1|0.2|ENSG00000170390|chr4:150102652-150102652|T/G|missense_variant	REV__DCLK2|p.V199G|1|0.2|ENSG00000170390|chr4:150102652-150102652|T/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	428.5169982910156	2	428.286746	854.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.325	1	57.325	56.825	57.825	0								0	0	0	0.8837	1	22057	22057		5.2307	0	1		+		37734	10338	24201	24325	36315	36315					0.12584153662180597
VTGLLFLVLM	10	Unmodified	_VTGLLFLVLM_					0	0	0			REV__ENSG00000196844|ENST00000358524|PATE2	REV__ENSG00000196844|ENST00000358524|PATE2	MULTI-SECPEP	HCT116MG_D190212_S1	1	553.8304443359375	2	553.338121	1104.66169	0.5906	0.0003268	-0.4122	-0.00022809	0.1784	9.8715E-05	553.3377419102753	53.726	0.97209	53.726	53.462	54.434	0					24	18	2	0	0	0	0.3093	1	20813	20813		5.7319	5.7319	1	25445000	+		37735	14048	24202	24326	36316	36316					0.11354478338603258
VTGPPGFL	8	Unmodified	_VTGPPGFL_					0	0	0			REV__ENSG00000277893|ENST00000622030|SRD5A2	REV__ENSG00000277893|ENST00000622030|SRD5A2	MULTI-SECPEP	HCT116MG_D190212_S2	2	394.1972961425781	2	394.221072	786.42759	0.44397	0.00017502	-0.17133	-6.7542E-05	0.27264	0.00010748	394.2208773071954	36.018	0.41335	35.89	35.709	36.122	-0.12799					18	7	3	0	0	0	0.33021	1	13501	13501		5.7604	0	1	198000000	+		37736	14467	24203	24327	36317	36317					0.025833432942818035
VTGSAIISVTF	11	Unmodified	_VTGSAIISVTF_					0	0	0		nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	MULTI-SECPEP	HCT116MG_D190212_S1	1	366.20220947265625	3	365.541252	1093.60193	-0.056533	-2.0665E-05	-0.41252	-0.00015079	-0.46906	-0.00017146	365.5411177871966	34.385	0.26047	34.385	34.233	34.493	0					7	4	2	0	0	0	0.36554	1	12697	12697		4.7159	2.8095	1	6928600			37737	1927	24204	24328	36318	36318					0.058868789289590495
VTGVHSDQK	9	Unmodified	_VTGVHSDQK_					0	0	0			REV__HIVEP1|p.R1031Gfs*4|1|0.22|ENSG00000095951|chr6:12122882-12122882|A/-|frameshift_variant	REV__HIVEP1|p.R1031Gfs*4|1|0.22|ENSG00000095951|chr6:12122882-12122882|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	972.4993896484375	1	970.495235	969.487959	0.87692	0.00085105	2.9567	0.0028695	3.8337	0.0037205	970.4988979574882	43.584	0.46378	43.511	43.303	43.767	-0.073372					22	8	4	0	0	0	0.31596	1	16619	16619		29.082	3.6823	1	62032000	+		37738	11034	24205	24329	36319	36319					0.0019940888671499124
VTGVIIGV	8	Unmodified	_VTGVIIGV_					0	0	0			REV__ENSG00000231389|ENST00000419277|HLA-DPA1	REV__ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	757.4827880859375	1	757.481817	756.47454	0.59187	0.00044833	0.5236	0.00039662	1.1155	0.00084494	757.4822141177704	50.6	0.20609	50.6	50.472	50.678	0					5	3	2	0	0	0	0.25164	1	19341	19341		63.563	0	1	10957000	+		37739	14321	24206	24330	36320	36320					0.08656202845429561
VTGVIIGV	8	Unmodified	_VTGVIIGV_					0	0	0			REV__ENSG00000231389|ENST00000419277|HLA-DPA1	REV__ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	HCT116MG_D190212_S2	2	757.482666015625	1	757.481817	756.47454	1.0154	0.00076912	-0.3045	-0.00023065	0.71086	0.00053846	757.4814620037027	50.756	0.41323	50.585	50.403	50.816	-0.1719					11	7	2	0	0	0	0.065436	1	19461	19461		106.85	8.0383	1	49594000	+		37740	14321	24206	24330	36321	36321					0.08656202845429561
VTGVIIGV	8	Unmodified	_VTGVIIGV_					0	0	0			REV__ENSG00000231389|ENST00000419277|HLA-DPA1	REV__ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	757.481817	756.47454	0.59187	0.00044833	0.5236	0.00039662	1.1155	0.00084494	757.4822141177704	50.6	0.20609	50.6	50.472	50.678	0	0.0075939	0.000398	NaN	106.85	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10957000	+		37741	14321	24206	24330							0.08656202845429561
VTGVIIGV	8	Unmodified	_VTGVIIGV_					0	0	0			REV__ENSG00000231389|ENST00000419277|HLA-DPA1	REV__ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	757.481817	756.47454	1.0154	0.00076912	-0.3045	-0.00023065	0.71086	0.00053846	757.4814620037027	50.756	0.41323	50.585	50.403	50.816	-0.1719	-0.0075939	-0.00022927	NaN	106.85	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49594000	+		37742	14321	24206	24330							0.08656202845429561
VTHKKVLYELR	11	Unmodified	_VTHKKVLYELR_					0	0	0			REV__FAM184B|p.D434Y|1|0.18|ENSG00000047662|chr4:17705077-17705077|C/A|missense_variant	REV__FAM184B|p.D434Y|1|0.18|ENSG00000047662|chr4:17705077-17705077|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	693.418212890625	2	693.416811	1384.81907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.075	1	57.904	57.404	58.404	-0.1703								0	0	0	0.94851	1	22435	22435		7.1017	3.8204	1		+		37743	16806	24207	24331	36322	36322					0.14205274202345208
VTHPRSGVP	9	Unmodified	_VTHPRSGVP_					0	0	0			REV__PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	REV__PIK3C2B|p.C561Afs*18|1|0.5|ENSG00000133056|chr1:204457761-204457761|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	475.2655029296875	2	475.264333	948.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.86	1	34.563	34.063	35.063	-0.29707								0	0	0	0.76781	1	12847	12847		8.5933	0	1		+		37744	12016	24208	24332	36323	36323					0.037797228488557266
VTHSRARQP	9	Unmodified	_VTHSRARQP_					0	0	0			REV__nc|ENSG00000170293|Q8IZV2-2|CMTM8	REV__nc|ENSG00000170293|Q8IZV2-2|CMTM8	MULTI-SECPEP	HCT116MG_D190212_S1	1	526.2930908203125	2	526.291414	1050.56827	0.082385	4.3358E-05	2.2987	0.0012098	2.3811	0.0012532	526.2932929857947	40.477	0.20725	40.477	40.383	40.591	0					5	3	2	0	0	0	0.25723	1	15241	15241		1.8442	0	1	8230300	+		37745	13289	24209	24333	36324	36324					0.04501315000402428
VTIDKLIQ	8	Unmodified	_VTIDKLIQ_					0	0	0			REV__CCNYL1|p.E267K|1|0.37|ENSG00000163249|chr2:207747206-207747206|G/A|missense_variant	REV__CCNYL1|p.E267K|1|0.37|ENSG00000163249|chr2:207747206-207747206|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	929.5670776367188	1	929.566609	928.559333	0.9746	0.00090596	-0.40669	-0.00037804	0.56791	0.00052791	929.5662772944379	55.297	0.15682	55.005	54.927	55.083	-0.2918					4	2	2	0	0	0	0.22303	1	20996	20996		69.105	4.8686	1	7445300	+		37746	10124	24210	24334	36325	36325					0.09219528591370363
VTIEELDPPP	10	Unmodified	_VTIEELDPPP_					0	0	0		CON__Q2KJF1	CON__Q2KJF1	CON__Q2KJF1	MULTI-SECPEP	HCT116MG_D190212_S1	1	555.2581787109375	2	555.289879	1108.56521	0.72111	0.00040042	-0.80123	-0.00044492	-0.080126	-4.4493E-05	555.2890977153304	41.385	0.20863	41.385	41.289	41.498	0					5	3	2	0	0	0	0.27023	1	15580	15580		32.305	15.363	1	3007000		+	37747	574	24211	24335	36326	36326					0.015265823123854716
VTIESEDCTV	10	Unmodified	_VTIESEDCTV_					0	0	0			REV__ZP2|p.R58S|1|0.1|ENSG00000103310|chr16:21210170-21210170|C/A|missense_variant	REV__ZP2|p.R58S|1|0.1|ENSG00000103310|chr16:21210170-21210170|C/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	548.24609375	2	548.247354	1094.48016	0.49379	0.00027072	-1.2122	-0.00066457	-0.71839	-0.00039385	548.2465750899959	27.256	0.26046	27.256	27.125	27.386	0					7	4	2	0	0	0	0.56527	1	9899	9899		30.637	0	1	11107000	+		37748	18092	24212	24336	36327	36327					-0.06330531215735391
VTIESEDCTV	10	Unmodified	_VTIESEDCTV_					0	0	0			REV__ZP2|p.R58S|1|0.1|ENSG00000103310|chr16:21210170-21210170|C/A|missense_variant	REV__ZP2|p.R58S|1|0.1|ENSG00000103310|chr16:21210170-21210170|C/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	548.247354	1094.48016	0.49379	0.00027072	-1.2122	-0.00066457	-0.71839	-0.00039385	548.2465750899959	27.256	0.26046	27.256	27.125	27.386	0	-0.082471	0.00035713	NaN	30.637	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11107000	+		37749	18092	24212	24336							-0.06330531215735391
VTIESEDCTV	10	Unmodified	_VTIESEDCTV_					0	0	0			REV__ZP2|p.R58S|1|0.1|ENSG00000103310|chr16:21210170-21210170|C/A|missense_variant	REV__ZP2|p.R58S|1|0.1|ENSG00000103310|chr16:21210170-21210170|C/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	548.247354	1094.48016	0.46576	0.00025535	-1.7033	-0.00093383	-1.2375	-0.00067848	548.246346460227	27.714	0.36098	27.372	27.139	27.5	-0.34201	0.034022	-0.0001814	NaN	30.637	14	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106390000	+		37750	18092	24212	24336							-0.06330531215735391
VTIESEDCTV	10	Unmodified	_VTIESEDCTV_					0	0	0			REV__ZP2|p.R58S|1|0.1|ENSG00000103310|chr16:21210170-21210170|C/A|missense_variant	REV__ZP2|p.R58S|1|0.1|ENSG00000103310|chr16:21210170-21210170|C/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	548.247354	1094.48016	0.59124	0.00032415	-1.4854	-0.00081435	-0.89413	-0.0004902	548.2464986649582	27.575	0.20802	27.387	27.257	27.465	-0.18847	0.04845	5.7567E-05	NaN	30.637	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7819500	+		37751	18092	24212	24336							-0.06330531215735391
VTIGRKFFK	9	Unmodified	_VTIGRKFFK_					0	0	0		tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	tr|U7SNJ2|U7SNJ2_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01733PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	548.0179443359375	2	548.337301	1094.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.54	1	41.163	40.663	41.663	-0.37637								0	0	0	0.76818	1	15249	15249		7.2892	0.56607	1				37752	18365	24213	24337	36328	36328					0.11650605364889088
VTIKGSQG	8	Unmodified	_VTIKGSQG_					0	0	0			REV__ENST00000513131.1_1_5:38462968-38464085:+|nuORF	REV__ENST00000513131.1_1_5:38462968-38464085:+|nuORF	MSMS	HCT116MG_D190212_S4	4	395.2274169921875	2	395.226885	788.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.103	1	40.725	40.225	41.225	-0.37732								0	0	0	0.8837	1	15104	15104		2.0598	0	1		+		37753	12998	24214	24338	36329	36329					0.036535403176344516
VTIRIGLATKK	11	Unmodified	_VTIRIGLATKK_					0	0	0		CEP78|p.A352V|1|0.09|ENSG00000148019|chr9:78248859-78248859|C/T|missense_variant	CEP78|p.A352V|1|0.09|ENSG00000148019|chr9:78248859-78248859|C/T|missense_variant	CEP78|p.A352V|1|0.09|ENSG00000148019|chr9:78248859-78248859|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	600.3951416015625	2	600.395348	1198.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.733	1	63.61	63.11	64.11	-0.12264								0	0	0	0.96208	1	24700	24700		0	0	1				37754	411	24215	24339	36330	36330					0.18470504144920596
VTIRKELKRKK	11	Unmodified	_VTIRKELKRKK_					0	0	0		nc|ENSG00000291135|Q92637-3|FCGR1BP;nc|ENSG00000291135|Q92637|FCGR1BP;nc|ENSG00000150337|P12314-2|FCGR1A;ENSG00000150337|ENST00000369168|FCGR1A	nc|ENSG00000291135|Q92637-3|FCGR1BP	nc|ENSG00000291135|Q92637-3|FCGR1BP	MSMS	HCT116MG_D190212_S1	1	699.9970703125	2	699.967003	1397.91945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.425	1	29.425	28.925	29.925	0								0	0	0	0.95113	1	10754	10754		5.7319	2.4505	1				37755	4082	24216	24340	36331	36331					0.2364093125599993
VTIRPLRP	8	Unmodified	_VTIRPLRP_					0	0	0		ENSG00000237441|ENST00000497454|RGL2;RGL2|p.E372Kfs*34|1|0.48|ENSG00000237441|chr6:33295329-33295329|C/-|frameshift_variant;nc|ENSG00000237441|O15211-2|RGL2;ENST00000483151.5_1_6:33261379-33266279:-|nuORF	ENSG00000237441|ENST00000497454|RGL2	ENSG00000237441|ENST00000497454|RGL2	MSMS	HCT116MG_D190212_S2	2	476.3063659667969	2	476.308544	950.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.578	1	47.447	46.947	47.947	-0.1309								0	0	0	0.8837	1	18153	18153		9.3474	0	1				37756	6529	24217	24341	36332	36332					0.12525763159317194
VTITNLSSKA	10	Unmodified	_VTITNLSSKA_					0	0	0		ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	MSMS	HCT116MG_D190212_S2	2	517.7682495117188	2	517.298039	1032.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.528	1	47.406	46.906	47.906	-0.12175								0	0	0	0.79191	1	18133	18133		29.841	2.6173	1				37757	5668	24218	24342	36333	36333					0.06653708269141134
VTIVDTVTL	9	Unmodified	_VTIVDTVTL_					0	0	0		MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant;MFSD6|p.L503Hfs*56|1|0.33|ENSG00000151690|chr2:190437536-190437555|CTTATTGAATTGATCGGCCA/-|frameshift_variant;ENSG00000151690|ENST00000392328|MFSD6	MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant	MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	960.5615234375	1	960.561189	959.553913	0.72291	0.00069439	0.15572	0.00014958	0.87863	0.00084397	960.5611715065353	56.416	0.20745	56.233	56.104	56.312	-0.18261					6	3	2	0	0	0	0.023611	1	21785	21785		92.822	0	1	46360000			37758	4123	24219	24343	36334	36334					0.07251805008922929
VTIVDTVTL	9	Unmodified	_VTIVDTVTL_					0	0	0		MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant;MFSD6|p.L503Hfs*56|1|0.33|ENSG00000151690|chr2:190437536-190437555|CTTATTGAATTGATCGGCCA/-|frameshift_variant;ENSG00000151690|ENST00000392328|MFSD6	MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant	MFSD6|p.F499Lfs*8|2|0.17|ENSG00000151690|chr2:190437520-190437520|T/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		1	960.561189	959.553913	0.76278	0.00073269	0.25107	0.00024117	1.0139	0.00097387	960.5613662765505	56.283	0.15488	56.283	56.171	56.326	0	0.024863	5.3517E-06	NaN	92.822	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7637000			37759	4123	24219	24343							0.07251805008922929
VTKGRGGL	8	Unmodified	_VTKGRGGL_					0	0	0		PCSK4|p.R281H|1|0.4|ENSG00000115257|chr19:1487154-1487154|C/T|missense_variant;ENST00000441747.6_1_19:1482202-1488015:-|nuORF;ENSG00000115257|ENST00000300954|PCSK4	PCSK4|p.R281H|1|0.4|ENSG00000115257|chr19:1487154-1487154|C/T|missense_variant	PCSK4|p.R281H|1|0.4|ENSG00000115257|chr19:1487154-1487154|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	394.2430114746094	2	394.24287	786.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.626	1	34.241	33.741	34.741	-0.38558								0	0	0	0.8837	1	12651	12651		5.7604	0	1				37760	2456	24220	24344	36335	36335					0.0694095279142175
VTKILSKKYKE	11	Unmodified	_VTKILSKKYKE_					0	0	0		nc|ENSG00000228970|P0CB48|UBTFL6	nc|ENSG00000228970|P0CB48|UBTFL6	nc|ENSG00000228970|P0CB48|UBTFL6	MULTI-SECPEP	HCT116MG_D190212_S2	2	668.3102416992188	2	668.91357	1335.81259	0.23504	0.00015722	1.2229	0.00081801	1.4579	0.00097523	668.9141928146197	49.272	0.35419	49.118	48.935	49.289	-0.15406					13	6	3	0	0	0	0.35699	1	18917	18917		6.1918	0	1	174440000			37761	9643	24221	24345	36336	36336					0.15811336250976638
VTKKGLAL	8	Unmodified	_VTKKGLAL_					0	0	0		nc|ENSG00000197057|Q6ZMT9-2|DTHD1;DTHD1|p.L499*|1|0.18|ENSG00000197057|chr4:36308267-36308267|T/-|frameshift_variant;nc|ENSG00000197057|Q6ZMT9|DTHD1;ENSG00000197057|ENST00000639862|DTHD1	nc|ENSG00000197057|Q6ZMT9-2|DTHD1	nc|ENSG00000197057|Q6ZMT9-2|DTHD1	MSMS	HCT116MG_D190212_S4	4	415.27752685546875	2	415.278921	828.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.472	1	47.102	46.602	47.602	-0.37038								0	0	0	0.8837	1	17559	17559		0.69038	0	1				37762	736	24222	24346	36337	36337					0.12215867145118864
VTKKKKKKKK	10	Unmodified	_VTKKKKKKKK_					0	0	0		AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense	AluSz6_dup36815|chr15:60362892-60363058:+|1.1099680225515125|0.0012375329650786|9.81|477.0|5|2|sense	MSMS	HCT116MG_D190212_S1	1	415.302978515625	3	415.30273	1242.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.977	1	39.977	39.477	40.477	0								0	0	0	0.97116	1	15012	15012		0	0	1				37763	118	24223	24347	36338	36338					0.27463349203958387
VTKPLAPL	8	Unmodified	_VTKPLAPL_					0	0	0			REV__ENSG00000166682|ENST00000299882|TMPRSS5	REV__ENSG00000166682|ENST00000299882|TMPRSS5	MSMS	HCT116MG_D190212_S4	4	419.77203369140625	2	419.773471	837.53239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.879	1	42.504	42.004	43.004	-0.37493								0	0	0	0.8837	1	15776	15776		0.79363	0	1		+		37764	13116	24224	24348	36339	36339					0.10712464770824681
VTKTGRLRG	9	Unmodified	_VTKTGRLRG_					0	0	0			REV__ENSG00000161016|ENST00000528957|RPL8	REV__ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	HCT116MG_D190212_S1	1	494.30633544921875	2	494.306532	986.598512	0.29442	0.00014553	-0.99347	-0.00049108	-0.69905	-0.00034555	494.3058932534291	49.429	0.25706	49.429	49.235	49.492	0					7	4	2	0	0	0	0.61923	1	18845	18845		10.074	0	1	16889000	+		37765	12850	24225	24349	36340	36340					0.10467673665607435
VTLCEKEVA	9	Carbamidomethyl (C)	_VTLC(Carbamidomethyl (C))EKEVA_	VTLC(1)EKEVA		VTLC(52)EKEVA		0	1	0		ENSG00000129480|ENST00000310850|DTD2	ENSG00000129480|ENST00000310850|DTD2	ENSG00000129480|ENST00000310850|DTD2	MULTI-MSMS	HCT116MG_D190212_S4	4	524.7709350585938	2	524.7708	1047.52705	0.30645	0.00016082	0.50215	0.00026351	0.8086	0.00042433	524.7707844827631	31.519	0.26	31.149	30.971	31.231	-0.37027					8	4	3	0	0	0	0.12994	1	11441	11441		52.268	6.2474	1	7196500			37766	3036	24226	24350	36341	36341	16				0.005183731260558488
VTLGLLLPW	9	Unmodified	_VTLGLLLPW_					0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	MSMS	HCT116MG_D190212_S4	4	506.3167724609375	2	506.315503	1010.61645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.101	1	36.716	36.216	37.216	-0.38486								0	0	0	0.76902	1	13602	13602		4.3292	0	1		+		37767	17233	24227	24351	36342	36342					0.11156995867759179
VTLGRRQT	8	Unmodified	_VTLGRRQT_					0	0	0			REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF	REV__ENST00000535296.5_1_11:62623694-62639117:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	465.77764892578125	2	465.777608	929.540663	0.29601	0.00013787	-0.07665	-3.5702E-05	0.21936	0.00010217	465.7774909331557	44.576	2.1251	44.491	43.498	45.623	-0.084801					60	40	2	0	0	0	0.83066	1	16931	16931		7.9102	0.62092	1	30977000	+		37768	16337	24228	24352	36343	36343					0.07307411740168845
VTLGRRVF	8	Unmodified	_VTLGRRVF_					0	0	0		ENST00000377044.8_2_9:74383426-74383705:-|nuORF	ENST00000377044.8_2_9:74383426-74383705:-|nuORF	ENST00000377044.8_2_9:74383426-74383705:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	474.32708740234375	2	474.292894	946.571235	0.37111	0.00017602	-0.96008	-0.00045536	-0.58897	-0.00027934	474.2923649099717	46.492	0.36106	46.38	46.11	46.471	-0.11121					10	6	2	0	0	0	0.32538	1	17679	17679		0.6015	0	1	25905000			37769	7519	24229	24353	36344	36344					0.09581190125220473
VTLGVREAR	9	Unmodified	_VTLGVREAR_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-SECPEP	HCT116MG_D190212_S1	1	501.3271179199219	2	500.79854	999.582528	0.28552	0.00014299	-0.57884	-0.00028988	-0.29332	-0.0001469	500.7984213098785	48.994	0.31052	48.994	48.768	49.079	0					8	5	2	0	0	0	0.26128	1	18650	18650		6.2058	0	1	5634200	+		37770	12913	24230	24354	36345	36345					0.08271967428697735
VTLKRLVKLSL	11	Unmodified	_VTLKRLVKLSL_					0	0	0			REV__ENST00000507640.1_1_5:61763053-61779022:+|nuORF	REV__ENST00000507640.1_1_5:61763053-61779022:+|nuORF	MSMS	HCT116MG_D190212_S1	1	635.4347534179688	2	635.434473	1268.85439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.144	1	40.144	39.644	40.644	0								0	0	0	0.95581	1	15080	15080		3.2813	0	1		+		37771	10930	24231	24355	36346	36346					0.2307193673018446
VTLKTIKKKQ	10	Unmodified	_VTLKTIKKKQ_					0	0	0		nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	nc|ENSG00000186462|Q9ULW6-2|NAP1L2;nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	MULTI-MSMS	HCT116MG_D190212_S1	1	1186.7891845703125	1	1186.78817	1185.78089	0.53665	0.00063689	0.49174	0.00058359	1.0284	0.0012205	1186.7883905307303	60.077	1.0564	60.077	59.227	60.284	0					95	38	4	0	0	0	0.89438	1	22943	22943		0	0	1	4736700			37772	5885;5927	24232	24356	36347	36347					0.19543388287706875
VTLKTIKKKQ	10	Unmodified	_VTLKTIKKKQ_					0	0	0		nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	nc|ENSG00000186462|Q9ULW6-2|NAP1L2;nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-3|NAP1L1	MULTI-SECPEP	HCT116MG_D190212_S2	2	1187.29443359375	1	1186.78817	1185.78089	0.56145	0.00066633	0.047194	5.6009E-05	0.60865	0.00072233	1186.7883739440506	61.253	0.88446	61.108	60.893	61.777	-0.14456					21	16	2	0	0	0	0.31204	1	23830	23830		0	0	1	3700000			37773	5885;5927	24232	24356	36348	36348					0.19543388287706875
VTLLLGLLLPP	11	Unmodified	_VTLLLGLLLPP_					0	0	0		LCAT|p.P34Rfs*27|1|0.12|ENSG00000213398|chr16:67944001-67944001|G/-|frameshift_variant;LCAT|p.F25Sfs*36|1|0.23|ENSG00000213398|chr16:67944030-67944030|G/-|frameshift_variant;ENST00000316341.7_1_16:67977830-67978124:-|nuORF;ENSG00000213398|ENST00000264005|LCAT	LCAT|p.P34Rfs*27|1|0.12|ENSG00000213398|chr16:67944001-67944001|G/-|frameshift_variant	LCAT|p.P34Rfs*27|1|0.12|ENSG00000213398|chr16:67944001-67944001|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	574.8873291015625	2	574.886293	1147.75803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.04	1	11.04	10.54	11.54	0								0	0	0	0.96208	1	3439	3439		0	0	1				37774	6411	24233	24357	36349	36349					0.19006369170233484
VTLLSTLEQ	9	Unmodified	_VTLLSTLEQ_					0	0	0			REV__nc|ENSG00000152582|Q9C093-4|SPEF2	REV__nc|ENSG00000152582|Q9C093-4|SPEF2	MSMS	HCT116MG_D190212_S2	2	502.2406311035156	2	502.28714	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.08	1	25.716	25.216	26.216	-0.36464								0	0	0	0.74083	1	9420	9420		17.113	4.5813	1		+		37775	12633	24234	24358	36350	36350					0.05854903520582866
VTLQFRPG	8	Unmodified	_VTLQFRPG_					0	0	0		SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.29|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;SDK2|p.P1324Lfs*69|1|0.1|ENSG00000069188|chr17:73391466-73391466|G/-|frameshift_variant;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;SDK2|p.S1083Vfs*66|2|0.32|ENSG00000069188|chr17:73398143-73398143|G/-|frameshift_variant	SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant	SDK2|p.T1715Pfs*21|1|0.11|ENSG00000069188|chr17:73368432-73368432|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	459.2640075683594	2	459.263802	916.513051	0.22182	0.00010187	0.24852	0.00011413	0.47033	0.00021601	459.2639044452542	33.387	0.25914	33.387	33.244	33.504	0					7	4	2	0	0	0	0.55794	1	12374	12374		36.044	9.1605	1	11054000			37776	1214	24235	24359	36351	36351					0.05145508479949967
VTLQKLDTI	9	Unmodified	_VTLQKLDTI_					0	0	0			REV__DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant	REV__DNAH3|p.V2829Yfs*9|1|0.43|ENSG00000158486|chr16:20965399-20965399|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	515.8115234375	2	515.810782	1029.60701	0.40731	0.0002101	0.34735	0.00017917	0.75466	0.00038926	515.811012626388	44.914	0.25993	44.828	44.69	44.95	-0.086166					9	4	3	0	0	0	0.1754	1	17103	17103		43.858	3.901	1	9657500	+		37777	10382	24236	24360	36352	36352					0.09339182791563871
VTLTLLQT	8	Unmodified	_VTLTLLQT_					0	0	0		ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant;ATG2A|p.G1888Afs*2|2|0.3|ENSG00000110046|chr11:64895127-64895127|C/-|frameshift_variant;ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant	ATG2A|p.G1473Afs*14|1|0.28|ENSG00000110046|chr11:64900540-64900540|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	888.54052734375	1	888.54006	887.532783	1.0861	0.00096507	0.51852	0.00046072	1.6047	0.0014258	888.5404384043554	60.327	2.5313	60.075	58.633	61.165	-0.25233					75	48	2	0	0	0	0.8672	1	22893	22893		2.3027	2.3027	1	12501000			37778	211	24237	24361	36353	36353					0.08451839700046548
VTLTQKEKV	9	Unmodified	_VTLTQKEKV_					0	0	0			REV__nc|ENSG00000171121|Q9NPA1-5|KCNMB3	REV__nc|ENSG00000171121|Q9NPA1-5|KCNMB3	MULTI-MSMS	HCT116MG_D190212_S3	3	523.3165893554688	2	523.316232	1044.61791	0.331	0.00017322	0.084611	4.4278E-05	0.41561	0.0002175	523.3162524775145	18.584	0.20809	18.659	18.568	18.776	0.074581					5	3	2	0	0	0	0.1535	1	6342	6342		47.594	1.5721	1	2742600	+		37779	17213	24238	24362	36354	36354					0.09738585165860059
VTLVYVVLFV	10	Unmodified	_VTLVYVVLFV_					0	0	0			REV__ENSG00000234560|ENST00000641224|OR10G8	REV__ENSG00000234560|ENST00000641224|OR10G8	MSMS	HCT116MG_D190212_S4	4	576.360595703125	2	576.357368	1150.70018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.498	1	41.122	40.622	41.622	-0.37637								0	0	0	0.96377	1	15238	15238		1.6526	0	1		+		37780	14329	24239	24363	36355	36355					0.1308610724479422
VTLWKVGPV	9	Unmodified	_VTLWKVGPV_					0	0	0			REV__ENST00000527285.1_1_11:18728401-18728901:+|nuORF	REV__ENST00000527285.1_1_11:18728401-18728901:+|nuORF	MSMS	HCT116MG_D190212_S2	2	499.8056640625	2	499.805303	997.596052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.974	1	56.795	56.295	57.295	-0.17904								0	0	0	0.76669	1	21990	21990		12.532	3.9383	1		+		37781	16284	24240	24364	36356	36356					0.09715825207945272
VTMKRRRRRRK	11	Unmodified	_VTMKRRRRRRK_					0	0	0			REV__KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant	REV__KDM2A|p.G855Efs*24|2|0.34|ENSG00000173120|chr11:67250589-67250589|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	771.7655029296875	2	771.989143	1541.96373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.439	1	54.143	53.643	54.643	-0.29587								0	0	0	0.9598	1	20628	20628		1.1933	0.88631	1		+		37782	16921	24241	24365	36357	36357					0.21443056921202697
VTMRRRKKEPL	11	Unmodified	_VTMRRRKKEPL_					0	0	0		ENSG00000081138|ENST00000397968|CDH7	ENSG00000081138|ENST00000397968|CDH7	ENSG00000081138|ENST00000397968|CDH7	MSMS	HCT116MG_D190212_S1	1	471.9542236328125	3	471.953884	1412.83982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.044	1	11.044	10.544	11.544	0								0	0	0	0.96208	1	3441	3441		0	0	1				37783	1410	24242	24366	36358	36358					0.1499154131040541
VTNGRALR	8	Unmodified	_VTNGRALR_					0	0	0			REV__ENST00000497686.1_1_10:35468072-35468240:+|nuORF	REV__ENST00000497686.1_1_10:35468072-35468240:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	443.2976379394531	2	443.764501	885.514448	0.2564	0.00011378	0.32157	0.0001427	0.57797	0.00025648	443.76446128065356	43.769	1.3126	43.394	42.859	44.171	-0.37433					75	35	4	0	0	0	0.31855	1	16138	16138		8.5933	0	1	12198000	+		37784	16101	24243	24367	36359	36359					0.06711142568701689
VTNKTKKTEEL	11	Unmodified	_VTNKTKKTEEL_					0	0	0		ENSG00000011243|ENST00000397410|AKAP8L;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENST00000600065.5_1_19:15492734-15508647:-|nuORF	ENSG00000011243|ENST00000397410|AKAP8L	ENSG00000011243|ENST00000397410|AKAP8L	MSMS	HCT116MG_D190212_S1	1	430.91375732421875	3	430.913637	1289.71908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.513	1	11.513	11.013	12.013	0								0	0	0	0.96208	1	3631	3631		0	0	1				37785	888	24244	24368	36360	36360					0.08580992077918381
VTNVALVL	8	Unmodified	_VTNVALVL_					0	0	0			REV__nc|ENSG00000138346|P51530-2|DNA2	REV__nc|ENSG00000138346|P51530-2|DNA2	MSMS	HCT116MG_D190212_S4	4	414.76177978515625	2	414.763104	827.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.732	1	52.392	51.892	52.892	-0.34023								0	0	0	0.8837	1	19666	19666		0.79363	0	1		+		37786	10376	24245	24369	36361	36361					0.09099874391165486
VTPALGGP	8	Unmodified	_VTPALGGP_					0	0	0			REV__nc|ENSG00000068400|Q4V328-2|GRIPAP1	REV__nc|ENSG00000068400|Q4V328-2|GRIPAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	356.20556640625	2	356.205421	710.39629	0.072047	2.5664E-05	0.33825	0.00012049	0.4103	0.00014615	356.20546075234193	47.131	0.25876	47.009	46.871	47.13	-0.12175					7	4	2	0	0	0	0.84759	1	17995	17995		5.7604	0	1	13714000	+		37787	10738	24246	24370	36362	36362					0.029507702601904384
VTPGAGRG	8	Unmodified	_VTPGAGRG_					0	0	0		ENST00000515332.5_1_4:108746149-108816471:+|nuORF	ENST00000515332.5_1_4:108746149-108816471:+|nuORF	ENST00000515332.5_1_4:108746149-108816471:+|nuORF	MSMS	HCT116MG_D190212_S4	4	357.69757080078125	2	357.698295	713.382037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.874	1	42.499	41.999	42.999	-0.37493								0	0	0	0.8837	1	15774	15774		2.5775	0	1				37788	8531	24247	24371	36363	36363					0.013881178318911225
VTPLPPPP	8	Unmodified	_VTPLPPPP_					0	0	0		nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;TRIM41|p.G497Vfs*70|1|0.49|ENSG00000146063|chr5:181234369-181234381|GGGGCTGGGCGGT/-|frameshift_variant;ENSG00000146063|ENST00000315073|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	MSMS	HCT116MG_D190212_S1	1	409.2446594238281	2	409.244547	816.47454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.784	1	20.784	20.284	21.284	0								0	0	0	0.8837	1	7282	7282		15.768	0	1				37789	3937	24248	24372	36364	36364					0.0589620284541752
VTPNAGPP	8	Unmodified	_VTPNAGPP_					0	0	0			REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	MSMS	HCT116MG_D190212_S3	3	376.7004699707031	2	376.700503	751.386454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.004	1	29.767	29.267	30.267	-0.23655								0	0	0	0.8837	1	10919	10919		8.5933	0	1		+		37790	16290	24249	24373	36365	36365					0.0008158225481338377
VTPSVKKRSS	10	Unmodified	_VTPSVKKRSS_					0	0	0		ENST00000515685.1_1_17:49075803-49079083:-|nuORF;ENST00000513827.5_1_17:49073859-49079083:-|nuORF;SPAG9|p.N750Ifs*8|1|0.15|ENSG00000008294|chr17:50993913-50993913|T/-|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9	ENST00000515685.1_1_17:49075803-49079083:-|nuORF	ENST00000515685.1_1_17:49075803-49079083:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1088.6431884765625	1	1088.64223	1087.63496	0.57662	0.00062774	0.59874	0.00065181	1.1754	0.0012795	1088.64250082218	52.15	0.25958	52.15	51.968	52.228	0					9	4	3	0	0	0	0.87059	1	19940	19940		5.7319	1.4026	1	107800000			37791	862	24250	24374	36366	36366					0.09464505771666154
VTPTDFSKSTS	11	Unmodified	_VTPTDFSKSTS_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.K1503Nfs*38|1|0.3|ENSG00000060749|chr11:32958008-32958008|A/-|frameshift_variant;QSER1|p.I1584*|1|0.24|ENSG00000060749|chr11:32969069-32969069|A/-|frameshift_variant;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MSMS	HCT116MG_D190212_S3	3	585.2880249023438	2	585.287868	1168.56118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.759	1	36.458	35.958	36.958	-0.30113								0	0	0	0.91433	1	13593	13593		18.146	0.011366	1				37792	1112	24251	24375	36367	36367					-0.01635507181322282
VTPYMLDLY	9	Oxidation (M)	_VTPYM(Oxidation (M))LDLY_		VTPYM(1)LDLY		VTPYM(74)LDLY	0	0	1		BMP2|p.P76T|1|0.43|ENSG00000125845|chr20:6770352-6770352|C/A|missense_variant	BMP2|p.P76T|1|0.43|ENSG00000125845|chr20:6770352-6770352|C/A|missense_variant	BMP2|p.P76T|1|0.43|ENSG00000125845|chr20:6770352-6770352|C/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	565.7760620117188	2	565.775551	1129.53655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.819	1	33.626	33.126	34.126	-0.19297								0	0	0	0.038654	1	12561	12561		74.423	28.402	1				37793	270	24252	24376	36368	36368		4			-0.023038585884023632
VTQLLMGI	8	Unmodified	_VTQLLMGI_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1;ENST00000484593.1_1_22:24462958-24467044:+|nuORF	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MSMS	HCT116MG_D190212_S3	3	437.7571716308594	2	437.756964	873.499375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.842	1	35.541	35.041	36.041	-0.30042								0	0	0	0.8396	1	13223	13223		19.439	0	1				37794	1651	24253	24377	36369	36369					0.05756514656491163
VTQVVIGDT	9	Unmodified	_VTQVVIGDT_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1;CNTNAP1|p.G828Afs*57|1|0.19|ENSG00000108797|chr17:42691939-42691939|G/-|frameshift_variant	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MSMS	HCT116MG_D190212_S2	2	466.2584228515625	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.186	1	26.833	26.333	27.333	-0.35254								0	0	0	0.30238	1	9864	9864		39.95	7.164	1				37795	2183	24254	24378	36370	36370					0.03418061315016985
VTQYDVQPR	9	Unmodified	_VTQYDVQPR_					0	0	0			REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	553.2852172851562	2	553.285463	1104.55637	0.33227	0.00018384	0.35499	0.00019641	0.68726	0.00038025	553.2854179205627	31.212	0.41799	30.951	30.761	31.179	-0.26071					15	7	3	0	0	0	0.21258	1	11389	11389		39.95	3.4435	1	10658000	+		37796	16427	24255	24379	36371	36371					0.008276534665583313
VTQYDVQPR	9	Unmodified	_VTQYDVQPR_					0	0	0			REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1105.565185546875	1	1105.56365	1104.55637	0.31337	0.00034645	0.36736	0.00040614	0.68073	0.00075259	1105.5639820926237	31.256	0.26124	30.996	30.813	31.074	-0.26071					7	4	2	0	0	0	0.15273	1	11429	11429		47.749	7.799	1	3551100	+		37797	16427	24255	24379	36372	36372					0.008276534665583313
VTQYDVQPR	9	Unmodified	_VTQYDVQPR_					0	0	0			REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	553.285463	1104.55637	0.33227	0.00018384	0.35499	0.00019641	0.68726	0.00038025	553.2854179205627	31.212	0.41799	30.951	30.761	31.179	-0.26071	0.0016593	-2.6121E-05	NaN	39.95	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10658000	+		37798	16427	24255	24379							0.008276534665583313
VTQYDVQPR	9	Unmodified	_VTQYDVQPR_					0	0	0			REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	REV__ENST00000552189.5_1_12:48477420-48482695:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S4	4		1	1105.56365	1104.55637	0.46802	0.00051742	0.0015917	1.7597E-06	0.46961	0.00051918	1105.5636418181666	31.316	0.20777	30.945	30.816	31.023	-0.37026	-0.02516	-0.00010148	NaN	47.749	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2551000	+		37799	16427	24255	24379							0.008276534665583313
VTRARLAF	8	Unmodified	_VTRARLAF_					0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	MSMS	HCT116MG_D190212_S4	4	467.28375244140625	2	467.285069	932.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.686	1	45.313	44.813	45.813	-0.37266								0	0	0	0.8837	1	16862	16862		2.5775	0	1		+		37800	13769	24256	24380	36373	36373					0.08660903608165427
VTREAISLV	9	Unmodified	_VTREAISLV_					0	0	0		nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;SHC1|p.V363Wfs*2|1|0.31|ENSG00000160691|chr1:154966414-154966414|C/-|frameshift_variant	nc|ENSG00000160691|P29353-3|SHC1	nc|ENSG00000160691|P29353-3|SHC1	MSMS	HCT116MG_D190212_S3	3	494.2955017089844	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.36	1	41.058	40.558	41.558	-0.30185								0	0	0	0.27628	1	15384	15384		41.84	0	1				37801	4459	24257	24381	36374	36374					0.08222029477326487
VTREDWGPASG	11	Unmodified	_VTREDWGPASG_					0	0	0			REV__PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	REV__PIK3C2G|p.N798Mfs*16|2|0.21|ENSG00000139144|chr12:18488455-18488455|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	392.1878662109375	3	392.18776	1173.54145	0.18244	7.155E-05	0.48561	0.00019045	0.66805	0.000262	392.18802324547397	24.541	0.20892	24.161	24.03	24.239	-0.38003					6	3	2	0	0	0	0.73156	1	8826	8826		8.2864	2.8837	1	13083000	+		37802	12250	24258	24382	36375	36375					-0.038378384014322364
VTRELKDRLQY	11	Unmodified	_VTRELKDRLQY_					0	0	0		nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	nc|ENSG00000090863|Q92896-3|GLG1	nc|ENSG00000090863|Q92896-3|GLG1	MSMS	HCT116MG_D190212_S3	3	710.9014282226562	2	710.898983	1419.78341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.239	1	42.935	42.435	43.435	-0.30472								0	0	0	0.94416	1	16128	16128		9.3831	0.63772	1				37803	9399	24259	24383	36376	36376					0.09031191954727547
VTRIGLPKW	9	Unmodified	_VTRIGLPKW_					0	0	0			REV__DDX23|p.G492W|1|0.4|ENSG00000174243|chr12:48834406-48834406|C/A|missense_variant	REV__DDX23|p.G492W|1|0.4|ENSG00000174243|chr12:48834406-48834406|C/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	534.8482666015625	2	535.329476	1068.6444	0.74294	0.00039772	4.1991	0.0022479	4.942	0.0026456	535.8338581077544	48.088	0.30456	47.955	47.79	48.095	-0.13281					6	5	2	0	0	0	0.25248	1	18358	18358		11.495	2.7493	1	27496000	+		37804	10345	24260	24384	36377	36377					0.11282318847815986
VTRLLKFPV	9	Unmodified	_VTRLLKFPV_					0	0	0			REV__ENST00000561088.1_1_15:65281580-65281854:-|nuORF	REV__ENST00000561088.1_1_15:65281580-65281854:-|nuORF	MSMS	HCT116MG_D190212_S2	2	358.2338562011719	3	358.234093	1071.68045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.825	1	45.724	45.224	46.224	-0.1014								0	0	0	0.76995	1	17438	17438		1.0715	0	1		+		37805	16491	24261	24385	36378	36378					0.14747776024682935
VTRRRARVAP	10	Unmodified	_VTRRRARVAP_					0	0	0			REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	MSMS	HCT116MG_D190212_S1	1	591.370849609375	2	591.37053	1180.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.316	1	38.316	37.816	38.816	0								0	0	0	0.93854	1	14341	14341		7.2892	2.96	1		+		37806	17570	24262	24386	36379	36379					0.14337233979517805
VTRTRSLSV	9	Unmodified	_VTRTRSLSV_					0	0	0		DLC1|p.A767V|1|0.16|ENSG00000164741|chr8:13100037-13100037|G/A|missense_variant	DLC1|p.A767V|1|0.16|ENSG00000164741|chr8:13100037-13100037|G/A|missense_variant	DLC1|p.A767V|1|0.16|ENSG00000164741|chr8:13100037-13100037|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	509.8042297363281	2	509.803823	1017.59309	0.50318	0.00025652	0.33177	0.00016914	0.83495	0.00042566	509.8037437814938	46.656	2.2652	46.545	45.648	47.913	-0.11122					129	43	5	0	0	0	0.61923	1	17961	17961		10.074	10.074	1	83331000			37807	681	24263	24387	36380	36380					0.08499950083137264
VTRTRSLSV	9	Unmodified	_VTRTRSLSV_					0	0	0		DLC1|p.A767V|1|0.16|ENSG00000164741|chr8:13100037-13100037|G/A|missense_variant	DLC1|p.A767V|1|0.16|ENSG00000164741|chr8:13100037-13100037|G/A|missense_variant	DLC1|p.A767V|1|0.16|ENSG00000164741|chr8:13100037-13100037|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	510.3053894042969	2	509.803823	1017.59309	0.19548	9.9656E-05	0.34084	0.00017376	0.53632	0.00027342	509.80383995289566	46.753	2.0455	46.439	45.94	47.986	-0.31405					83	40	3	0	0	0	0.60612	1	17893	17893		10.824	0	1	14799000			37808	681	24263	24387	36381	36381					0.08499950083137264
VTRVLPEV	8	Unmodified	_VTRVLPEV_					0	0	0		ZNF532|p.T1272Lfs*8|1|0.46|ENSG00000074657|chr18:58984370-58984370|A/-|frameshift_variant;ENSG00000074657|ENST00000591808|ZNF532;ZNF532|p.Y656Lfs*14|1|0.07|ENSG00000074657|chr18:58920247-58920248|-/T|frameshift_variant	ZNF532|p.T1272Lfs*8|1|0.46|ENSG00000074657|chr18:58984370-58984370|A/-|frameshift_variant	ZNF532|p.T1272Lfs*8|1|0.46|ENSG00000074657|chr18:58984370-58984370|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	456.7787780761719	2	456.779285	911.544017	0.20336	9.2889E-05	-0.91289	-0.00041699	-0.70953	-0.0003241	456.77873929983735	57.837	0.26156	57.662	57.521	57.783	-0.17494					6	4	2	0	0	0	0.85329	1	22375	22375		4.756	0	1	5014400			37809	1300	24264	24388	36382	36382					0.08470661794183343
VTRVRPGQ	8	Unmodified	_VTRVRPGQ_					0	0	0		B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant;ENSG00000182272|ENST00000329962|B4GALNT4	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	456.7726135253906	2	456.772326	911.530098	0.19328	8.8286E-05	0.40072	0.00018304	0.59401	0.00027133	456.77232630056284	50.581	0.67716	50.409	50.036	50.713	-0.17191					19	12	2	0	0	0	0.76189	1	19432	19432		15.847	3.3156	1	11895000			37810	246	24265	24389	36383	36383					0.07079429085752054
VTRVRPGQ	8	Unmodified	_VTRVRPGQ_					0	0	0		B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant;ENSG00000182272|ENST00000329962|B4GALNT4	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	B4GALNT4|p.G768Afs*19|1|0.14|ENSG00000182272|chr11:379512-379512|G/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	456.772326	911.530098	-0.064051	-2.9257E-05	0.51174	0.00023375	0.44769	0.00020449	456.77242652456005	50.24	0.87609	50.24	49.647	50.523	0	-0.084551	4.4597E-05	NaN	15.847	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51446000			37811	246	24265	24389							0.07079429085752054
VTSDIPKAM	9	Unmodified	_VTSDIPKAM_					0	0	0		ENST00000220888.9_2_8:116616535-116616574:-|nuORF	ENST00000220888.9_2_8:116616535-116616574:-|nuORF	ENST00000220888.9_2_8:116616535-116616574:-|nuORF	MSMS	HCT116MG_D190212_S2	2	481.25482177734375	2	481.254785	960.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.49	1	31.241	30.741	31.741	-0.24883								0	0	0	0.46109	1	11618	11618		30.637	0	1				37812	6752	24266	24390	36384	36384					0.013190054429287557
VTSFKETI	8	Unmodified	_VTSFKETI_					0	0	0		CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant;CUL5|p.N565Ifs*18|1|0.28|ENSG00000166266|chr11:108094931-108094931|A/-|frameshift_variant;ENSG00000166266|ENST00000393094|CUL5	CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant	CUL5|p.N565Kfs*3|1|0.32|ENSG00000166266|chr11:108094930-108094931|-/A|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	462.14654541015625	2	462.755475	923.496398	0.32222	0.00014911	0.22934	0.00010613	0.55156	0.00025524	462.75550970398774	52.482	0.20508	52.294	52.142	52.347	-0.18725					5	3	2	0	0	0	0.31507	1	20165	20165		14.582	0	1	3906800			37813	618	24267	24391	36385	36385					0.03158962803343002
VTSIPLGGGG	10	Unmodified	_VTSIPLGGGG_					0	0	0			REV__ENST00000551706.1_1_12:58145281-58145962:-|nuORF	REV__ENST00000551706.1_1_12:58145281-58145962:-|nuORF	MSMS	HCT116MG_D190212_S4	4	429.2398681640625	2	429.239993	856.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.536	1	11.355	10.855	11.855	-0.18135								0	0	0	0.97116	1	3566	3566		0	0	1		+		37814	12091	24268	24392	36386	36386					0.03145809489114981
VTSKWEAS	8	Unmodified	_VTSKWEAS_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	HCT116MG_D190212_S2	2	454.2296447753906	2	454.229625	906.444697	0.28364	0.00012884	-0.37966	-0.00017245	-0.096024	-4.3617E-05	454.2294719077015	26.205	0.3106	25.844	25.713	26.024	-0.36164					7	5	2	0	0	0	0.557	1	9498	9498		36.127	2.6821	1	10259000	+		37815	14017	24269	24393	36387	36387					-0.012267808905789934
VTSSLGSVPD	10	Unmodified	_VTSSLGSVPD_					0	0	0		ENST00000548460.2_1_7:144532514-144532616:-|nuORF	ENST00000548460.2_1_7:144532514-144532616:-|nuORF	ENST00000548460.2_1_7:144532514-144532616:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	962.7887573242188	1	961.483667	960.476391	0.56744	0.00054559	0.65224	0.00062712	1.2197	0.0011727	961.4845109040733	36.68	0.36439	36.379	36.145	36.509	-0.30113					13	6	3	0	0	0	0.37629	1	13602	13602		43.858	7.8141	1	11501000			37816	8738	24270	24394	36388	36388					-0.005428329272831434
VTSTGSRS	8	Unmodified	_VTSTGSRS_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-MSMS	HCT116MG_D190212_S1	1	794.4002685546875	1	794.400272	793.392996	0.60734	0.00048247	-0.090653	-7.2015E-05	0.51669	0.00041046	794.3997569824081	40.886	0.24388	40.886	40.742	40.986	0					7	4	2	0	0	0	0.86564	1	15400	15400		2.5775	0	1	18295000	+		37817	11691	24271	24395	36389	36389					-0.011965245844749006
VTSTVEEPV	9	Unmodified	_VTSTVEEPV_					0	0	0			REV__ENST00000506410.1_1_4:68378087-68379960:-|nuORF	REV__ENST00000506410.1_1_4:68378087-68379960:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	961.6868896484375	1	960.488418	959.481142	0.70649	0.00067857	-0.16	-0.00015368	0.54649	0.0005249	960.4882007572775	36.36	0.26792	36.36	36.202	36.47	0					6	4	2	0	0	0	0.13706	1	13580	13580		50.855	0	1	6464600	+		37818	10149	24272	24396	36390	36390					-0.00021948784524283838
VTTDIQVKV	9	Unmodified	_VTTDIQVKV_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	HCT116MG_D190212_S1	1	501.79595947265625	2	501.795132	1001.57571	0.69729	0.00034989	0.63077	0.00031652	1.3281	0.00066641	501.7955270594847	37.353	0.19767	37.353	37.249	37.447	0					5	3	2	0	0	0	0.082877	1	13978	13978		61.602	1.528	1	9066000			37819	6054	24273	24397	36391	36391					0.07498609757465147
VTTDPQPLP	9	Unmodified	_VTTDPQPLP_					0	0	0		ENST00000380359.3_1_10:5493865-5494450:+|nuORF	ENST00000380359.3_1_10:5493865-5494450:+|nuORF	ENST00000380359.3_1_10:5493865-5494450:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	484.2455749511719	2	484.258382	966.502212	0.39258	0.00019011	0.282	0.00013656	0.67459	0.00032668	484.25838517807284	30.821	0.26017	30.821	30.659	30.919	0					8	4	3	0	0	0	0.33687	1	11283	11283		26.884	3.7352	1	4166700			37820	7564	24274	24398	36392	36392					0.017620613149915698
VTTFNIDDQY	10	Unmodified	_VTTFNIDDQY_					0	0	0		nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	nc|ENSG00000089597|Q14697-2|GANAB	MULTI-SECPEP	HCT116MG_D190212_S2	2	608.3856201171875	2	608.280043	1214.54553	0.55389	0.00033692	-0.33785	-0.00020551	0.21603	0.00013141	608.2799045818329	42.215	0.25856	42.146	42.016	42.274	-0.068199					6	4	2	0	0	0	0.3111	1	15931	15931		1.6526	0	1	7892600			37821	1529	24275	24399	36393	36393					-0.05315793698378002
VTTGRRKRRR	10	Unmodified	_VTTGRRKRRR_					0	0	0			REV__ENST00000519243.1_1_8:23228271-23261606:-|nuORF	REV__ENST00000519243.1_1_8:23228271-23261606:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	429.08868408203125	3	429.272716	1284.79632	0.22072	9.4751E-05	0.54508	0.00023399	0.7658	0.00032874	429.27278802706496	56.041	0.15658	55.753	55.623	55.779	-0.28773					4	2	2	0	0	0	0.31203	1	21267	21267		0	0	1	624700	+		37822	15296	24276	24400	36394	36394					0.16531112648112867
VTTGRRKRRR	10	Unmodified	_VTTGRRKRRR_					0	0	0			REV__ENST00000519243.1_1_8:23228271-23261606:-|nuORF	REV__ENST00000519243.1_1_8:23228271-23261606:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	429.272716	1284.79632	0.10723	4.6032E-05	0.89591	0.00038459	1.0031	0.00043062	429.273004103681	55.757	0.61884	55.571	55.327	55.946	-0.18565	-0.030396	8.0689E-05	NaN	0	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64100000	+		37823	15296	24276	24400							0.16531112648112867
VTTGRRKRRR	10	Unmodified	_VTTGRRKRRR_					0	0	0			REV__ENST00000519243.1_1_8:23228271-23261606:-|nuORF	REV__ENST00000519243.1_1_8:23228271-23261606:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	429.272716	1284.79632	0.33917	0.0001456	0.84442	0.00036249	1.1836	0.00050808	429.2730332626866	55.896	0.47593	55.584	55.402	55.878	-0.312	-0.017436	1.438E-05	NaN	0	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6473000	+		37824	15296	24276	24400							0.16531112648112867
VTTHQEHM	8	Unmodified	_VTTHQEHM_					0	0	0		ENST00000381346.8_1_14:68144270-68144630:-|nuORF	ENST00000381346.8_1_14:68144270-68144630:-|nuORF	ENST00000381346.8_1_14:68144270-68144630:-|nuORF	MSMS	HCT116MG_D190212_S2	2	491.9103698730469	2	491.724184	981.433814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.729	1	50.557	50.057	51.057	-0.1719								0	0	0	0.8837	1	19447	19447		8.5933	0	1				37825	7578	24277	24401	36395	36395					-0.057645065365022674
VTTIQRQLS	9	Unmodified	_VTTIQRQLS_					0	0	0			REV__nc|ENSG858|P60608|ERVFC1-1	REV__nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	HCT116MG_D190212_S1	1	523.779052734375	2	523.303655	1044.59276	0.38243	0.00020013	0.21485	0.00011243	0.59728	0.00031256	523.3036513002883	47.414	1.968	47.414	46.44	48.408	0					106	38	4	0	0	0	0.72399	1	18209	18209		3.5965	3.5965	1	136680000	+		37826	17336	24278	24402	36396	36396					0.07224530363282611
VTTLKSLRVKV	11	Unmodified	_VTTLKSLRVKV_					0	0	0		ENST00000593891.1_1_19:8941870-8942911:-|nuORF	ENST00000593891.1_1_19:8941870-8942911:-|nuORF	ENST00000593891.1_1_19:8941870-8942911:-|nuORF	MSMS	HCT116MG_D190212_S2	2	622.4080810546875	2	622.408455	1242.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.382	1	59.222	58.722	59.722	-0.16012								0	0	0	0.96208	1	22962	22962		0	0	1				37827	9052	24279	24403	36397	36397					0.19066773316399122
VTTLVLSP	8	Unmodified	_VTTLVLSP_					0	0	0			REV__OR1M1|p.S264L|1|0.32|ENSG00000170929|chr19:9094035-9094035|C/T|missense_variant	REV__OR1M1|p.S264L|1|0.32|ENSG00000170929|chr19:9094035-9094035|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	415.25384521484375	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.273	1	35.13	34.63	35.63	-0.14245								0	0	0	0.8837	1	13151	13151		4.756	0	1		+		37828	17365	24280	24404	36398	36398					0.07456168154271836
VTTLVLSP	8	Unmodified	_VTTLVLSP_					0	0	0			REV__OR1M1|p.S264L|1|0.32|ENSG00000170929|chr19:9094035-9094035|C/T|missense_variant	REV__OR1M1|p.S264L|1|0.32|ENSG00000170929|chr19:9094035-9094035|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	415.25482177734375	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.1	1	50.921	50.421	51.421	-0.17868								0	0	0	0.8837	1	19598	19598		8.5933	0	1		+		37829	17365	24280	24404	36399	36399					0.07456168154271836
VTTLVLSP	8	Unmodified	_VTTLVLSP_					0	0	0			REV__OR1M1|p.S264L|1|0.32|ENSG00000170929|chr19:9094035-9094035|C/T|missense_variant	REV__OR1M1|p.S264L|1|0.32|ENSG00000170929|chr19:9094035-9094035|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	415.2538757324219	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.578	1	37.277	36.777	37.777	-0.30137								0	0	0	0.8837	1	13924	13924		12.532	0	1		+		37830	17365	24280	24404	36400	36400					0.07456168154271836
VTTLVLSP	8	Unmodified	_VTTLVLSP_					0	0	0			REV__OR1M1|p.S264L|1|0.32|ENSG00000170929|chr19:9094035-9094035|C/T|missense_variant	REV__OR1M1|p.S264L|1|0.32|ENSG00000170929|chr19:9094035-9094035|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	415.2616882324219	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.4	1	47.029	46.529	47.529	-0.37038								0	0	0	0.8837	1	17532	17532		4.3292	0	1		+		37831	17365	24280	24404	36401	36401					0.07456168154271836
VTTVLLSV	8	Unmodified	_VTTVLLSV_					0	0	0		nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1	nc|ENSG00000119004|Q6UW02-2|CYP20A1	nc|ENSG00000119004|Q6UW02-2|CYP20A1	MSMS	HCT116MG_D190212_S4	4	416.2646179199219	2	416.262936	830.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.352	1	59.074	58.574	59.574	-0.27731								0	0	0	0.8837	1	22332	22332		0.69038	0	1				37832	2623	24281	24405	36402	36402					0.08928454671342934
VTVDLAVL	8	Unmodified	_VTVDLAVL_					0	0	0		ENST00000307851.8_1_5:156536160-156536190:-|nuORF	ENST00000307851.8_1_5:156536160-156536190:-|nuORF	ENST00000307851.8_1_5:156536160-156536190:-|nuORF	MSMS	HCT116MG_D190212_S2	2	415.25341796875	2	415.255111	828.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.308	1	44.226	43.726	44.726	-0.081951								0	0	0	0.8837	1	16823	16823		5.2307	0	1				37833	7034	24282	24406	36403	36403					0.07456168154271836
VTVDLWSIG	9	Unmodified	_VTVDLWSIG_					0	0	0		IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant;nc|ENSG00000263528|Q14164-2|IKBKE;ENSG00000263528|ENST00000581977|IKBKE	IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant	IKBKE|p.R348Dfs*32|1|0.58|ENSG00000263528|chr1:206478987-206478987|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	495.26910400390625	2	495.26875	988.522947	0.34893	0.00017281	-0.31909	-0.00015804	0.029831	1.4775E-05	495.2688416812254	50.821	0.25792	50.647	50.505	50.763	-0.17356					9	4	3	0	0	0	0.2682	1	19519	19519		34.102	8.7031	1	14742000			37834	6640	24283	24407	36404	36404					0.02822651694657452
VTVDSLVP	8	Unmodified	_VTVDSLVP_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-3|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-3|VWA5B1	MSMS	HCT116MG_D190212_S4	4	415.2357482910156	2	415.236919	828.459284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.903	1	43.529	43.029	44.029	-0.37392								0	0	0	0.8837	1	16155	16155		10.183	0	1		+		37835	12791	24284	24408	36405	36405					0.03819291257559598
VTVGDLTVI	9	Unmodified	_VTVGDLTVI_					0	0	0		YAF2|p.E117D|1|0.1|ENSG00000015153|chr12:42160781-42160781|T/G|missense_variant;ENST00000550315.1_1_12:42554393-42554687:-|nuORF;nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;ENST00000552109.5_1_12:42554393-42631425:-|nuORF;ENSG00000015153|ENST00000534854|YAF2;nc|ENSG00000015153|Q8IY57-5|YAF2	YAF2|p.E117D|1|0.1|ENSG00000015153|chr12:42160781-42160781|T/G|missense_variant	YAF2|p.E117D|1|0.1|ENSG00000015153|chr12:42160781-42160781|T/G|missense_variant	MSMS	HCT116MG_D190212_S1	1	458.7712707519531	2	458.771126	915.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.489	1	45.489	44.989	45.989	0								0	0	0	0.15181	1	17236	17236		50.855	0	1				37836	924	24285	24409	36406	36406					0.06655535837421667
VTVGDLTVI	9	Unmodified	_VTVGDLTVI_					0	0	0		YAF2|p.E117D|1|0.1|ENSG00000015153|chr12:42160781-42160781|T/G|missense_variant;ENST00000550315.1_1_12:42554393-42554687:-|nuORF;nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;ENST00000552109.5_1_12:42554393-42631425:-|nuORF;ENSG00000015153|ENST00000534854|YAF2;nc|ENSG00000015153|Q8IY57-5|YAF2	YAF2|p.E117D|1|0.1|ENSG00000015153|chr12:42160781-42160781|T/G|missense_variant	YAF2|p.E117D|1|0.1|ENSG00000015153|chr12:42160781-42160781|T/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	458.7713928222656	2	458.771126	915.527698	0.10387	4.7651E-05	-0.084242	-3.8648E-05	0.019625	9.0034E-06	458.7710702266584	45.481	0.30905	45.388	45.205	45.514	-0.092472					13	5	3	0	0	0	0.065014	1	17299	17299		67.344	6.9543	1	77752000			37837	924	24285	24409	36407	36407					0.06655535837421667
VTVGDLTVI	9	Unmodified	_VTVGDLTVI_					0	0	0		YAF2|p.E117D|1|0.1|ENSG00000015153|chr12:42160781-42160781|T/G|missense_variant;ENST00000550315.1_1_12:42554393-42554687:-|nuORF;nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;ENST00000552109.5_1_12:42554393-42631425:-|nuORF;ENSG00000015153|ENST00000534854|YAF2;nc|ENSG00000015153|Q8IY57-5|YAF2	YAF2|p.E117D|1|0.1|ENSG00000015153|chr12:42160781-42160781|T/G|missense_variant	YAF2|p.E117D|1|0.1|ENSG00000015153|chr12:42160781-42160781|T/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	458.7712097167969	2	458.771126	915.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.779	1	45.468	44.968	45.968	-0.31094								0	0	0	0.15181	1	17150	17150		50.855	0	1				37838	924	24285	24409	36408	36408					0.06655535837421667
VTVPGQPP	8	Unmodified	_VTVPGQPP_					0	0	0		ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	MULTI-MSMS	HCT116MG_D190212_S3	3	397.7237243652344	2	397.723978	793.433404	0.10486	4.1706E-05	-0.35061	-0.00013945	-0.24575	-9.774E-05	397.72378389938586	26.013	0.26086	25.885	25.755	26.016	-0.12795					7	4	2	0	0	0	0.62424	1	9331	9331		30.225	1.738	1	5408000			37839	5405	24286	24410	36409	36409					0.02842441805944418
VTVRRDRAP	9	Unmodified	_VTVRRDRAP_					0	0	0		NXF1|p.S494Cfs*29|1|0.38|ENSG00000162231|chr11:62795923-62795924|AG/-|frameshift_variant;nc|ENSG00000162231|Q9UBU9-2|NXF1;ENSG00000162231|ENST00000294172|NXF1	NXF1|p.S494Cfs*29|1|0.38|ENSG00000162231|chr11:62795923-62795924|AG/-|frameshift_variant	NXF1|p.S494Cfs*29|1|0.38|ENSG00000162231|chr11:62795923-62795924|AG/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	535.3148193359375	2	535.314889	1068.61522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.95	1	47.95	47.45	48.45	0								0	0	0	0.76818	1	18232	18232		7.2892	0	1				37840	9712	24287	24411	36410	36410					0.08366174551542827
VTVVRSLRRPP	11	Unmodified	_VTVVRSLRRPP_					0	0	0		nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-3|BZW1	MSMS	HCT116MG_D190212_S1	1	640.4016723632812	2	640.401496	1278.78844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.506	1	39.506	39.006	40.006	0								0	0	0	0.95196	1	14822	14822		5.2969	0.39987	1				37841	9390	24288	24412	36411	36411					0.16019540607976523
VTWCLARHEWA	11	Unmodified	_VTWCLARHEWA_					0	0	0			REV__TUBGCP6|p.E1173Sfs*151|1|0.26|ENSG00000128159|chr22:50220842-50220842|C/-|frameshift_variant	REV__TUBGCP6|p.E1173Sfs*151|1|0.26|ENSG00000128159|chr22:50220842-50220842|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	686.124755859375	2	686.334964	1370.65538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.961	1	40.961	40.461	41.461	0								0	0	0	0.8876	1	15411	15411		21.59	3.2171	1		+		37842	18031	24289	24413	36412	36412					-0.015126468401831517
VTWFPNLMR	9	Unmodified	_VTWFPNLMR_					0	0	0		ENST00000561460.5_1_15:40845959-40849193:+|nuORF	ENST00000561460.5_1_15:40845959-40849193:+|nuORF	ENST00000561460.5_1_15:40845959-40849193:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	388.25439453125	3	388.539188	1162.59573	0.30613	0.00011894	-0.62069	-0.00024116	-0.31456	-0.00012222	388.5390282340628	36.225	0.20673	36.097	35.967	36.174	-0.12799					8	3	3	0	0	0	0.2615	1	13536	13536		7.1017	3.7821	1	10194000			37843	8816	24290	24414	36413	36413					0.020940822164448036
VTWHHRPSP	9	Unmodified	_VTWHHRPSP_					0	0	0			REV__ENST00000563475.1_1_16:88740642-88740978:+|nuORF	REV__ENST00000563475.1_1_16:88740642-88740978:+|nuORF	MSMS	HCT116MG_D190212_S1	1	558.7860107421875	2	558.788507	1115.56246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.482	1	43.482	42.982	43.982	0								0	0	0	0.76694	1	16428	16428		11.64	2.2572	1		+		37844	16512	24291	24415	36414	36414					0.009302164887458275
VTWTIQPL	8	Unmodified	_VTWTIQPL_					0	0	0			REV__nc|ENSG00000156222|O00337-2|SLC28A1	REV__nc|ENSG00000156222|O00337-2|SLC28A1	MULTI-MSMS	HCT116MG_D190212_S4	4	479.3705749511719	2	479.273835	956.533118	0.50359	0.00024136	0.14095	6.7556E-05	0.64455	0.00030892	479.2738711653914	55.792	0.15624	55.48	55.402	55.558	-0.312					4	2	2	0	0	0	0.84759	1	20870	20870		5.7604	0	1	4676300	+		37845	17173	24292	24416	36415	36415					0.05311259419897851
VVAGGKKV	8	Unmodified	_VVAGGKKV_					0	0	0			REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	379.2488098144531	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.286	1	47.97	47.47	48.47	-0.31596								0	0	0	0.8837	1	18156	18156		0.79363	0	1		+		37846	17954	24293	24417	36416	36416					0.09779024939564351
VVAGGKKV	8	Unmodified	_VVAGGKKV_					0	0	0			REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	REV__tr|U7T3P5|U7T3P5_FUSNUPhospho-2-dehydro-3-deoxyheptonatealdolaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00192PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	379.2486877441406	2	379.250163	756.485774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.855	1	48.539	48.039	49.039	-0.31596								0	0	0	0.8837	1	18384	18384		0.79363	0	1		+		37847	17954	24293	24417	36417	36417					0.09779024939564351
VVAGQPKE	8	Unmodified	_VVAGQPKE_					0	0	0			REV__ENST00000591201.5_1_19:1487843-1489828:-|nuORF	REV__ENST00000591201.5_1_19:1487843-1489828:-|nuORF	MSMS	HCT116MG_D190212_S1	1	414.2332458496094	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.718	1	50.718	50.218	51.218	0								0	0	0	0.8837	1	19359	19359		0.79363	0	1		+		37848	16691	24294	24418	36418	36418					0.03469826834657397
VVAGRATR	8	Unmodified	_VVAGRATR_					0	0	0			REV__ENST00000468718.5_1_1:46860020-46871294:+|nuORF	REV__ENST00000468718.5_1_1:46860020-46871294:+|nuORF	MSMS	HCT116MG_D190212_S1	1	415.2532958984375	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.567	1	53.567	53.067	54.067	0								0	0	0	0.8837	1	20518	20518		0.79363	0	1		+		37849	11617	24295	24419	36419	36419					0.07187757539975337
VVAGRATR	8	Unmodified	_VVAGRATR_					0	0	0			REV__ENST00000468718.5_1_1:46860020-46871294:+|nuORF	REV__ENST00000468718.5_1_1:46860020-46871294:+|nuORF	MSMS	HCT116MG_D190212_S4	4	415.25396728515625	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.98	1	47.611	47.111	48.111	-0.36907								0	0	0	0.8837	1	17754	17754		0.79363	0	1		+		37850	11617	24295	24419	36420	36420					0.07187757539975337
VVAGRATR	8	Unmodified	_VVAGRATR_					0	0	0			REV__ENST00000468718.5_1_1:46860020-46871294:+|nuORF	REV__ENST00000468718.5_1_1:46860020-46871294:+|nuORF	MSMS	HCT116MG_D190212_S4	4	415.254150390625	2	415.253769	828.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.523	1	50.164	49.664	50.664	-0.35878								0	0	0	0.8837	1	18774	18774		0.79363	0	1		+		37851	11617	24295	24419	36421	36421					0.07187757539975337
VVAGRRKS	8	Unmodified	_VVAGRRKS_					0	0	0		TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant;TMEM132D|p.S1011Afs*35|1|0.47|ENSG00000151952|chr12:129074144-129074144|T/-|frameshift_variant;ENSG00000151952|ENST00000422113|TMEM132D	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	436.77484130859375	2	436.774868	871.535184	0.066977	2.9254E-05	-0.43311	-0.00018917	-0.36613	-0.00015992	436.77459033433183	49.788	2.6121	49.473	48.975	51.588	-0.31525					137	49	5	0	0	0	0.87576	1	18926	18926		0.79363	0	1	934580000			37852	4131	24296	24420	36422	36422					0.09427732948370249
VVAGRRKS	8	Unmodified	_VVAGRRKS_					0	0	0		TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant;TMEM132D|p.S1011Afs*35|1|0.47|ENSG00000151952|chr12:129074144-129074144|T/-|frameshift_variant;ENSG00000151952|ENST00000422113|TMEM132D	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	436.7748718261719	2	436.774868	871.535184	0.24645	0.00010764	-0.4635	-0.00020245	-0.21705	-9.4804E-05	436.77475031461614	52.168	0.98563	51.823	51.571	52.556	-0.34538					25	18	2	0	0	0	0.87576	1	19424	19424		0.79363	0	1	4631700			37853	4131	24296	24420	36423	36423					0.09427732948370249
VVAGRRKS	8	Unmodified	_VVAGRRKS_					0	0	0		TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant;TMEM132D|p.S1011Afs*35|1|0.47|ENSG00000151952|chr12:129074144-129074144|T/-|frameshift_variant;ENSG00000151952|ENST00000422113|TMEM132D	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	436.7749328613281	2	436.774868	871.535184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.798	1	52.458	51.958	52.958	-0.34023								0	0	0	0.8837	1	19693	19693		0.79363	0	1				37854	4131	24296	24420	36424	36424					0.09427732948370249
VVAGRRKS	8	Unmodified	_VVAGRRKS_					0	0	0		TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant;TMEM132D|p.S1011Afs*35|1|0.47|ENSG00000151952|chr12:129074144-129074144|T/-|frameshift_variant;ENSG00000151952|ENST00000422113|TMEM132D	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	436.7744445800781	2	436.774868	871.535184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.735	1	53.406	52.906	53.906	-0.32923								0	0	0	0.8837	1	20071	20071		0.79363	0	1				37855	4131	24296	24420	36425	36425					0.09427732948370249
VVAGRRKS	8	Unmodified	_VVAGRRKS_					0	0	0		TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant;TMEM132D|p.S1011Afs*35|1|0.47|ENSG00000151952|chr12:129074144-129074144|T/-|frameshift_variant;ENSG00000151952|ENST00000422113|TMEM132D	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	TMEM132D|p.V216M|1|0.28|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	436.77496337890625	2	436.774868	871.535184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.412	1	54.088	53.588	54.588	-0.32349								0	0	0	0.8837	1	20344	20344		0.79363	0	1				37856	4131	24296	24420	36426	36426					0.09427732948370249
VVAGTDLVLP	10	Unmodified	_VVAGTDLVLP_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C;ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2928466796875	2	492.292225	982.569897	0.38608	0.00019006	0.51921	0.0002556	0.90529	0.00044567	492.292560684421	45.138	0.2095	45.045	44.943	45.153	-0.092476					5	3	2	0	0	0	0.2521	1	17185	17185		54.774	0.94076	1	11188000			37857	5027	24297	24421	36427	36427					0.07791511245784477
VVAGVIPS	8	Unmodified	_VVAGVIPS_					0	0	0		ENST00000607421.1_1_12:7053547-7053766:-|nuORF	ENST00000607421.1_1_12:7053547-7053766:-|nuORF	ENST00000607421.1_1_12:7053547-7053766:-|nuORF	MSMS	HCT116MG_D190212_S1	1	371.22735595703125	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.378	1	53.378	52.878	53.878	0								0	0	0	0.8837	1	20441	20441		0.79363	0	1				37858	9120	24298	24422	36428	36428					0.06263629811314786
VVAGVIPS	8	Unmodified	_VVAGVIPS_					0	0	0		ENST00000607421.1_1_12:7053547-7053766:-|nuORF	ENST00000607421.1_1_12:7053547-7053766:-|nuORF	ENST00000607421.1_1_12:7053547-7053766:-|nuORF	MSMS	HCT116MG_D190212_S3	3	371.2279968261719	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.689	1	37.387	36.887	37.887	-0.30137								0	0	0	0.8837	1	13958	13958		0.79363	0	1				37859	9120	24298	24422	36429	36429					0.06263629811314786
VVAGVIPS	8	Unmodified	_VVAGVIPS_					0	0	0		ENST00000607421.1_1_12:7053547-7053766:-|nuORF	ENST00000607421.1_1_12:7053547-7053766:-|nuORF	ENST00000607421.1_1_12:7053547-7053766:-|nuORF	MSMS	HCT116MG_D190212_S4	4	371.22747802734375	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.618	1	37.235	36.735	37.735	-0.3839								0	0	0	0.8837	1	13811	13811		0.79363	0	1				37860	9120	24298	24422	36430	36430					0.06263629811314786
VVAPGGLP	8	Unmodified	_VVAPGGLP_					0	0	0		ATAT1|p.P300Hfs*31|2|0.39|ENSG00000137343|chr6:30642937-30642937|C/-|frameshift_variant	ATAT1|p.P300Hfs*31|2|0.39|ENSG00000137343|chr6:30642937-30642937|C/-|frameshift_variant	ATAT1|p.P300Hfs*31|2|0.39|ENSG00000137343|chr6:30642937-30642937|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	355.21527099609375	2	355.215789	708.417025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.465	1	13.161	12.661	13.661	-0.30453								0	0	0	0.8837	1	4403	4403		0.79363	0	1				37861	209	24299	24423	36431	36431					0.051153606398429474
VVCTGSVP	8	Unmodified	_VVCTGSVP_					0	0	0		FNIP1|p.P733Tfs*4|1|0.29|ENSG00000217128|chr5:131672247-131672248|-/T|frameshift_variant;FNIP1|p.K732Nfs*23|1|0.16|ENSG00000217128|chr5:131672248-131672248|T/-|frameshift_variant;FNIP1|p.N877Kfs*2|1|0.45|ENSG00000217128|chr5:131671813-131671814|-/T|frameshift_variant;FNIP1|p.I925Nfs*6|1|0.21|ENSG00000217128|chr5:131671670-131671671|-/T|frameshift_variant;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	FNIP1|p.P733Tfs*4|1|0.29|ENSG00000217128|chr5:131672247-131672248|-/T|frameshift_variant	FNIP1|p.P733Tfs*4|1|0.29|ENSG00000217128|chr5:131672247-131672248|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	381.1962585449219	2	381.196739	760.378925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.538	1	58.268	57.768	58.768	-0.26932								0	0	0	0.8837	1	22271	22271		2.8892	0	1				37862	6458	24300	24424	36432	36432					-0.010848933371221392
VVDDWIESY	9	Unmodified	_VVDDWIESY_					0	0	0		STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;STAG2|p.F121Lfs*24|1|0.35|ENSG00000101972|chrX:124037596-124037596|T/-|frameshift_variant;ENST00000462818.1_1_3:136219063-136323180:-|nuORF;STAG1|p.F292Lfs*28|1|0.41|ENSG00000118007|chr3:136500249-136500249|A/-|frameshift_variant;nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	563.2587890625	2	563.258579	1124.50261	0.52086	0.00029338	-0.12379	-6.9725E-05	0.39707	0.00022365	563.2585259406268	53.521	0.26125	53.218	53.087	53.348	-0.30305					8	4	3	0	0	0	0.24973	1	20286	20286		36.044	24.404	1	3082100			37863	2595	24301	24425	36433	36433					-0.05466563755817333
VVDDWIESY	9	Unmodified	_VVDDWIESY_					0	0	0		STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;STAG2|p.F121Lfs*24|1|0.35|ENSG00000101972|chrX:124037596-124037596|T/-|frameshift_variant;ENST00000462818.1_1_3:136219063-136323180:-|nuORF;STAG1|p.F292Lfs*28|1|0.41|ENSG00000118007|chr3:136500249-136500249|A/-|frameshift_variant;nc|ENSG00000101972|Q8N3U4|STAG2;STAG2|p.T1208Kfs*3|1|0.87|ENSG00000101972|chrX:124095400-124095400|C/-|frameshift_variant;ENSG00000101972|ENST00000371145|STAG2	STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	STAG1|p.K1087Nfs*3|1|0.3|ENSG00000118007|chr3:136349168-136349168|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	563.258544921875	2	563.258579	1124.50261	0.32843	0.00018499	0.27462	0.00015468	0.60305	0.00033967	563.2583910535891	53.568	0.20846	53.233	53.087	53.296	-0.33473					5	3	2	0	0	0	0.41514	1	20027	20027		21.747	10.923	1	2659300			37864	2595	24301	24425	36434	36434					-0.05466563755817333
VVDEHTGQY	9	Unmodified	_VVDEHTGQY_					0	0	0		ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1;nc|ENSG00000135541|Q8N157-2|AHI1	ENSG00000135541|ENST00000265602|AHI1	ENSG00000135541|ENST00000265602|AHI1	MULTI-MSMS	HCT116MG_D190212_S1	1	524.2406616210938	2	524.240721	1046.46689	0.44869	0.00023522	-0.21154	-0.0001109	0.23715	0.00012432	524.2405031238543	21.133	0.26908	21.133	20.956	21.226	0					9	4	3	0	0	0	0.0063854	1	7433	7433		125.53	93.224	1	7251700			37865	3356	24302	24426	36435	36435					-0.054486012128108996
VVDEHTGQY	9	Unmodified	_VVDEHTGQY_					0	0	0		ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1;nc|ENSG00000135541|Q8N157-2|AHI1	ENSG00000135541|ENST00000265602|AHI1	ENSG00000135541|ENST00000265602|AHI1	MULTI-MSMS	HCT116MG_D190212_S2	2	524.240966796875	2	524.240721	1046.46689	0.3026	0.00015864	0.12959	6.7937E-05	0.43219	0.00022657	524.24080560903	21.545	0.3119	21.16	21.011	21.323	-0.38503					11	5	3	0	0	0	0.0050238	1	7607	7607		137.42	106.79	1	20045000			37866	3356	24302	24426	36436	36436					-0.054486012128108996
VVDEHTGQY	9	Unmodified	_VVDEHTGQY_					0	0	0		ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1;nc|ENSG00000135541|Q8N157-2|AHI1	ENSG00000135541|ENST00000265602|AHI1	ENSG00000135541|ENST00000265602|AHI1	MULTI-MSMS	HCT116MG_D190212_S3	3	524.2408447265625	2	524.240721	1046.46689	0.19546	0.00010247	0.37376	0.00019594	0.56922	0.00029841	524.2407314806335	21.018	0.20816	21.053	20.923	21.131	0.034473					6	3	2	0	0	0	0.0040527	1	7309	7309		149.91	109.96	1	9804100			37867	3356	24302	24426	36437	36437					-0.054486012128108996
VVDEHTGQY	9	Unmodified	_VVDEHTGQY_					0	0	0		ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1;nc|ENSG00000135541|Q8N157-2|AHI1	ENSG00000135541|ENST00000265602|AHI1	ENSG00000135541|ENST00000265602|AHI1	MULTI-MATCH	HCT116MG_D190212_S4	4		2	524.240721	1046.46689	0.39664	0.00020793	-0.80732	-0.00042323	-0.41069	-0.0002153	524.2405943350038	21.343	0.20783	21.127	20.961	21.169	-0.21565	0.0088772	-0.00078222	NaN	149.91	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1558600			37868	3356	24302	24426							-0.054486012128108996
VVEHQQAAAP	10	Unmodified	_VVEHQQAAAP_					0	0	0			REV__ENST00000263708.6_1_2:120517682-120517859:+|nuORF	REV__ENST00000263708.6_1_2:120517682-120517859:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	525.7740478515625	2	525.272355	1048.53016	0.33664	0.00017683	0.047198	2.4792E-05	0.38384	0.00020162	525.2723089078486	19.123	0.46807	19.192	18.927	19.395	0.069159					14	8	2	0	0	0	0.60826	1	6565	6565		27.629	0	1	3308600	+		37869	14656	24303	24427	36438	36438					0.00783384295095857
VVEKCSSKTCS	11	Unmodified	_VVEKCSSKTCS_					0	0	0		TACC1|p.P408Ffs*2|1|0.09|ENSG00000147526|chr8:38820466-38820473|CCCCTCTC/-|frameshift_variant;ENST00000522955.5_1_8:38663104-38684943:+|nuORF;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	TACC1|p.P408Ffs*2|1|0.09|ENSG00000147526|chr8:38820466-38820473|CCCCTCTC/-|frameshift_variant	TACC1|p.P408Ffs*2|1|0.09|ENSG00000147526|chr8:38820466-38820473|CCCCTCTC/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	390.8546447753906	3	390.854625	1169.54204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.617	1	11.617	11.117	12.117	0								0	0	0	0.96208	1	3672	3672		0	0	1				37870	3990	24304	24428	36439	36439					-0.03594503068211452
VVELDYEDI	9	Unmodified	_VVELDYEDI_					0	0	0		sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1;sp|F5HB41|US30_HCMVMUncharacterizedproteinUS30OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	547.7666015625	2	547.766237	1093.51792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.261	1	50.911	50.411	51.411	-0.35028								0	0	0	0.76694	1	19073	19073		11.64	0.81637	1				37871	18192	24305	24429	36440	36440					-0.02509696958600216
VVEQLKDWLY	10	Unmodified	_VVEQLKDWLY_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MSMS	HCT116MG_D190212_S1	1	646.8485717773438	2	646.847896	1291.68124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.527	1	54.527	54.027	55.027	0								0	0	0	0.92845	1	20912	20912		9.544	2.9136	1				37872	4669	24306	24430	36441	36441					0.04706525883102586
VVEQLKDWLY	10	Unmodified	_VVEQLKDWLY_					0	0	0		ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	ENSG00000164109|ENST00000296509|MAD2L1	MULTI-MSMS	HCT116MG_D190212_S2	2	646.84814453125	2	646.847896	1291.68124	0.67154	0.00043439	-0.24866	-0.00016085	0.42288	0.00027354	646.847620287667	54.671	0.20457	54.481	54.354	54.559	-0.1894					10	3	4	0	0	0	0.021186	1	21077	21077		118.21	56.608	1	136510000			37873	4669	24306	24430	36442	36442					0.04706525883102586
VVESTFTDSC	10	Unmodified	_VVESTFTDSC_					0	0	0			REV__ENSG00000172324|ENST00000302040|OR5A2	REV__ENSG00000172324|ENST00000302040|OR5A2	MSMS	HCT116MG_D190212_S4	4	363.1598205566406	3	363.15859	1086.45394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.6	1	57.306	56.806	57.806	-0.29465								0	0	0	0.96377	1	21625	21625		0.69767	0	1		+		37874	13383	24307	24431	36443	36443					-0.08582800387193856
VVEWKLNE	8	Unmodified	_VVEWKLNE_					0	0	0			REV__tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	REV__tr|U7SRG6|U7SRG6_FUSNULong-chainacyl-CoAsynthetaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01594PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	508.7748718261719	2	508.7742	1015.53385	0.42958	0.00021856	0.029553	1.5036E-05	0.45913	0.00023359	508.7742142605165	41.455	0.30676	41.387	41.242	41.549	-0.068199					7	5	2	0	0	0	0.19352	1	15687	15687		74.929	16.25	1	19728000	+		37875	17761	24308	24432	36444	36444					0.02670054068948957
VVFKKMVP	8	Unmodified	_VVFKKMVP_					0	0	0		ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	MSMS	HCT116MG_D190212_S3	3	474.291259765625	2	474.290974	946.567395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.917	1	42.612	42.112	43.112	-0.30472								0	0	0	0.8837	1	16002	16002		5.7604	0.52976	1				37876	7833	24309	24433	36445	36445					0.09197384307151424
VVFKKMVP	8	Unmodified	_VVFKKMVP_					0	0	0		ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	473.82489013671875	2	474.290974	946.567395	0.3857	0.00018293	-0.19433	-9.217E-05	0.19137	9.0764E-05	474.2908133608152	52.095	1.4535	51.75	50.895	52.348	-0.34538					46	27	2	0	0	0	0.84759	2	19083	19083;19251		5.7604	5.7604	1	16668000			37877	7833	24309	24433	36446;36447	36446					0.09197384307151424
VVGAATAP	8	Unmodified	_VVGAATAP_					0	0	0			REV__ENSG00000006047|ENST00000007699|YBX2	REV__ENSG00000006047|ENST00000007699|YBX2	MULTI-MSMS	HCT116MG_D190212_S2	2	685.388671875	1	685.387916	684.38064	0.39689	0.00027202	0.35137	0.00024082	0.74826	0.00051285	685.38803828768	29.844	0.56805	29.543	29.289	29.857	-0.30096					14	10	2	0	0	0	0.77285	1	11022	11022		14.582	3.4672	1	11909000	+		37878	10485	24310	24434	36448	36448					0.02582483743128705
VVGALQPP	8	Unmodified	_VVGALQPP_					0	0	0		SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;ENST00000467731.1_1_21:33057290-33073360:-|nuORF	SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant	SCAF4|p.V1113Cfs*7|1|0.22|ENSG00000156304|chr21:31671506-31671506|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	390.73333740234375	2	390.734346	779.454139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.871	1	47.556	47.056	48.056	-0.31545								0	0	0	0.8837	1	17989	17989		0.79363	0	1				37879	4282	24311	24435	36449	36449					0.055590321856129776
VVGAPRGR	8	Unmodified	_VVGAPRGR_					0	0	0		ENST00000463554.5_1_2:233599907-233635753:+|nuORF;GIGYF2|p.L491Ffs*6|1|0.38|ENSG00000204120|chr2:232794934-232794935|-/T|frameshift_variant;GIGYF2|p.L631*|1|0.4|ENSG00000204120|chr2:232809801-232809801|T/-|frameshift_variant;GIGYF2|p.L640Wfs*27|1|0.5|ENSG00000204120|chr2:232811261-232811261|T/-|frameshift_variant;GIGYF2|p.A735Yfs*90|1|0.05|ENSG00000204120|chr2:232815731-232815732|-/TACACACATG|frameshift_variant;nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	ENST00000463554.5_1_2:233599907-233635753:+|nuORF	ENST00000463554.5_1_2:233599907-233635753:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	406.7501220703125	2	406.248486	810.48242	-0.011726	-4.7637E-06	0.091556	3.7194E-05	0.07983	3.2431E-05	406.2485168917951	48.621	2.9455	48.254	47.151	50.096	-0.36727					277	73	7	0	0	0	0.86564	3	18248	17920;18248;18502		2.5775	0	1	1184900000			37880	6321	24312	24436	36450;36451;36452	36451					0.06959774885569914
VVGASVGG	8	Unmodified	_VVGASVGG_					0	0	0		nc|ENSG00000162775|Q96T37-4|RBM15;RBM15|p.G910Afs*41|1|0.42|ENSG00000162775|chr1:110342129-110342129|G/-|frameshift_variant;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15;RBM15|p.P284Lfs*98|3|0.26|ENSG00000162775|chr1:110340251-110340251|C/-|frameshift_variant;RBM15|p.P592Qfs*23|1|0.22|ENSG00000162775|chr1:110341176-110341176|C/-|frameshift_variant	nc|ENSG00000162775|Q96T37-4|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	MULTI-MSMS	HCT116MG_D190212_S2	2	645.3571166992188	1	645.356616	644.34934	0.65196	0.00042075	0.38316	0.00024728	1.0351	0.00066802	645.3567850156082	20.695	0.26388	20.316	20.13	20.394	-0.37949					7	4	2	0	0	0	0.29313	1	7256	7256		59.795	0	1	10805000			37881	4555	24313	24437	36453	36453					0.012939107090687685
VVGASVGG	8	Unmodified	_VVGASVGG_					0	0	0		nc|ENSG00000162775|Q96T37-4|RBM15;RBM15|p.G910Afs*41|1|0.42|ENSG00000162775|chr1:110342129-110342129|G/-|frameshift_variant;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15;RBM15|p.P284Lfs*98|3|0.26|ENSG00000162775|chr1:110340251-110340251|C/-|frameshift_variant;RBM15|p.P592Qfs*23|1|0.22|ENSG00000162775|chr1:110341176-110341176|C/-|frameshift_variant	nc|ENSG00000162775|Q96T37-4|RBM15	nc|ENSG00000162775|Q96T37-4|RBM15	MULTI-MATCH	HCT116MG_D190212_S3	3		1	645.356616	644.34934	0.49657	0.00032046	0.36675	0.00023668	0.86331	0.00055715	645.3567201290837	20.166	0.20823	20.214	20.103	20.311	0.048109	-0.050572	-8.5241E-06	NaN	59.795	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1308900			37882	4555	24313	24437							0.012939107090687685
VVGASVLQVPF	11	Unmodified	_VVGASVLQVPF_					0	0	0			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MSMS	HCT116MG_D190212_S4	4	558.3287963867188	2	558.326599	1114.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.11	1	46.74	46.24	47.24	-0.37038								0	0	0	0.9414	1	17415	17415		10.824	2.2306	1		+		37883	13497	24314	24438	36454	36454					0.0859117554552995
VVGLQVKEEL	10	Unmodified	_VVGLQVKEEL_					0	0	0			REV__ENSG00000183671|ENST00000621141|CMKLR2	REV__ENSG00000183671|ENST00000621141|CMKLR2	MSMS	HCT116MG_D190212_S3	3	557.3292846679688	2	557.329339	1112.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.403	1	38.102	37.602	38.602	-0.30137								0	0	0	0.93576	1	14225	14225		7.9102	0	1		+		37884	13773	24315	24439	36455	36455					0.0923085433732922
VVGNLYRQYYS	11	Unmodified	_VVGNLYRQYYS_					0	0	0			REV__ENSG00000186073|ENST00000566621|CDIN1	REV__ENSG00000186073|ENST00000566621|CDIN1	MSMS	HCT116MG_D190212_S1	1	681.3458862304688	2	681.346052	1360.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.033	1	42.033	41.533	42.533	0								0	0	0	0.93552	1	15843	15843		13.906	4.5229	1		+		37885	13873	24316	24440	36456	36456					0.01163856109246808
VVGPGRGRA	9	Unmodified	_VVGPGRGRA_					0	0	0		ENST00000590548.5_1_19:11594499-11598073:-|nuORF	ENST00000590548.5_1_19:11594499-11598073:-|nuORF	ENST00000590548.5_1_19:11594499-11598073:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	434.7593078613281	2	434.759218	867.503883	0.35526	0.00015445	0.23471	0.00010204	0.58997	0.0002565	434.7592496014194	47.742	1.2815	47.61	47.067	48.348	-0.13281					58	24	5	0	0	0	0.61923	1	18122	18122		10.074	0.6908	1	1876999999.9999998			37886	9029	24317	24441	36457	36457					0.06483159914284897
VVGTLGPV	8	Unmodified	_VVGTLGPV_					0	0	0			REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	MSMS	HCT116MG_D190212_S3	3	371.22735595703125	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.912	1	42.607	42.107	43.107	-0.30472								0	0	0	0.8837	1	16000	16000		0.79363	0	1		+		37887	12196	24318	24442	36458	36458					0.06263629811326155
VVGVLSAP	8	Unmodified	_VVGVLSAP_					0	0	0			REV__SKIDA1|p.G539Vfs*8|1|0.08|ENSG00000180592|chr10:21516207-21516208|-/TA|frameshift_variant	REV__SKIDA1|p.G539Vfs*8|1|0.08|ENSG00000180592|chr10:21516207-21516208|-/TA|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	371.22833251953125	2	371.228897	740.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.969	1	46.599	46.099	47.099	-0.37038								0	0	0	0.8837	1	17358	17358		0.69038	0	1		+		37888	17518	24319	24443	36459	36459					0.06263629811314786
VVGYVASV	8	Unmodified	_VVGYVASV_					0	0	0		tr|U7T6G4|U7T6G4_FUSNUIon-translocatingoxidoreductasecomplexsubunitGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfGPE=3SV=1	tr|U7T6G4|U7T6G4_FUSNUIon-translocatingoxidoreductasecomplexsubunitGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfGPE=3SV=1	tr|U7T6G4|U7T6G4_FUSNUIon-translocatingoxidoreductasecomplexsubunitGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=rnfGPE=3SV=1	MSMS	HCT116MG_D190212_S3	3	397.227294921875	2	397.226354	792.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.45	1	58.181	57.681	58.681	-0.26932								0	0	0	0.8837	1	22235	22235		2.5775	0	1				37889	18645	24320	24444	36460	36460					0.03363325948714646
VVHASVVT	8	Unmodified	_VVHASVVT_					0	0	0		ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	MSMS	HCT116MG_D190212_S1	1	406.2372131347656	2	406.237253	810.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.159	1	21.159	20.659	21.659	0								0	0	0	0.77419	1	7430	7430		24.674	5.2349	1				37890	4535	24321	24445	36461	36461					0.047141306972775965
VVHGLICL	8	Unmodified	_VVHGLICL_					0	0	0			REV__ENST00000336576.9_2_2:220150715-220151078:+|nuORF	REV__ENST00000336576.9_2_2:220150715-220151078:+|nuORF	MSMS	HCT116MG_D190212_S4	4	427.2517395019531	2	427.251849	852.489145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.914	1	58.631	58.131	59.131	-0.28305								0	0	0	0.8837	1	22157	22157		0.79363	0	1		+		37891	14952	24322	24446	36462	36462					0.05699951721908292
VVHMKQKGKK	10	Unmodified	_VVHMKQKGKK_					0	0	0		ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MSMS	HCT116MG_D190212_S1	1	394.9093017578125	3	394.909504	1181.70668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7152	1	9.7152	9.2152	10.215	0								0	0	0	0.96377	1	2951	2951		0.69767	0.07084	1				37892	6171	24323	24447	36463	36463					0.12309721924521
VVHPKVKR	8	Unmodified	_VVHPKVKR_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;SYTL2|p.Q663Tfs*35|1|0.14|ENSG00000137501|chr11:85709344-85709345|-/T|frameshift_variant;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	HCT116MG_D190212_S2	2	962.6248779296875	1	962.625796	961.618519	0.68825	0.00066252	0.19915	0.00019171	0.8874	0.00085424	962.6256928592479	60.899	1.3481	60.75	60.373	61.721	-0.14852					45	25	3	0	0	0	0.88026	1	23759	23759		0	0	1	26780000			37893	3483	24324	24448	36464	36464					0.13617469396228898
VVIILFILLF	10	Unmodified	_VVIILFILLF_					0	0	0		ENSG00000125498|ENST00000336077|KIR2DL1;nc|ENSG00000125498|P43626-2|KIR2DL1	ENSG00000125498|ENST00000336077|KIR2DL1	ENSG00000125498|ENST00000336077|KIR2DL1	MSMS	HCT116MG_D190212_S3	3	397.2694396972656	3	397.270145	1188.7886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.734	1	57.46	56.96	57.96	-0.27434								0	0	0	0.97045	1	21947	21947		0.15932	0	1				37894	2891	24325	24449	36465	36465					0.20176147555275747
VVIKVLILI	9	Unmodified	_VVIKVLILI_					0	0	0		ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	MSMS	HCT116MG_D190212_S1	1	505.375	2	505.372821	1008.73109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.278	1	15.278	14.778	15.778	0								0	0	0	0.77025	1	5064	5064		0	0	1				37895	8674	24326	24450	36466	36466					0.227073053497179
VVILLTPA	8	Unmodified	_VVILLTPA_					0	0	0			REV__nc|ENSG00000109738|P48167-2|GLRB	REV__nc|ENSG00000109738|P48167-2|GLRB	MSMS	HCT116MG_D190212_S1	1	413.2745056152344	2	413.275847	824.537141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.77	1	44.77	44.27	45.27	0								0	0	0	0.8837	1	16945	16945		0.69038	0.69038	1		+		37896	11379	24327	24451	36467	36467					0.1178534891361096
VVIMMFELIL	10	Unmodified	_VVIMMFELIL_					0	0	0			REV__KCNQ5|p.V166M|1|0.24|ENSG00000185760|chr6:73041942-73041942|G/A|missense_variant	REV__KCNQ5|p.V166M|1|0.24|ENSG00000185760|chr6:73041942-73041942|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	403.2326965332031	3	403.232485	1206.67562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0318	1	4.0318	3.5318	4.5318	0								0	0	0	0.97116	1	1207	1207		0	0	1		+		37897	16920	24328	24452	36468	36468					0.08055387775425515
VVIMMFELIL	10	Unmodified	_VVIMMFELIL_					0	0	0			REV__KCNQ5|p.V166M|1|0.24|ENSG00000185760|chr6:73041942-73041942|G/A|missense_variant	REV__KCNQ5|p.V166M|1|0.24|ENSG00000185760|chr6:73041942-73041942|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	403.2325439453125	3	403.232485	1206.67562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.011	1	62.882	62.382	63.382	-0.12924								0	0	0	0.97116	1	24430	24430		0	0	1		+		37898	16920	24328	24452	36469	36469					0.08055387775425515
VVIMMFELIL	10	Unmodified	_VVIMMFELIL_					0	0	0			REV__KCNQ5|p.V166M|1|0.24|ENSG00000185760|chr6:73041942-73041942|G/A|missense_variant	REV__KCNQ5|p.V166M|1|0.24|ENSG00000185760|chr6:73041942-73041942|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	403.2322998046875	3	403.232485	1206.67562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7282	1	6.7421	6.2421	7.2421	0.013901								0	0	0	0.97116	1	2032	2032		0	0	1		+		37899	16920	24328	24452	36470	36470					0.08055387775425515
VVIQKGWS	8	Unmodified	_VVIQKGWS_					0	0	0		ENST00000460297.1_1_16:448229-448523:+|nuORF	ENST00000460297.1_1_16:448229-448523:+|nuORF	ENST00000460297.1_1_16:448229-448523:+|nuORF	MSMS	HCT116MG_D190212_S1	1	458.7655334472656	2	458.766178	915.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.036	1	59.036	58.536	59.536	0								0	0	0	0.8837	1	22757	22757		2.5775	0	1				37900	8042	24329	24453	36471	36471					0.05666392622708827
VVIQKGWS	8	Unmodified	_VVIQKGWS_					0	0	0		ENST00000460297.1_1_16:448229-448523:+|nuORF	ENST00000460297.1_1_16:448229-448523:+|nuORF	ENST00000460297.1_1_16:448229-448523:+|nuORF	MSMS	HCT116MG_D190212_S1	1	458.7650451660156	2	458.766178	915.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.715	1	59.715	59.215	60.215	0								0	0	0	0.8837	1	23015	23015		2.5775	0	1				37901	8042	24329	24453	36472	36472					0.05666392622708827
VVIQKGWS	8	Unmodified	_VVIQKGWS_					0	0	0		ENST00000460297.1_1_16:448229-448523:+|nuORF	ENST00000460297.1_1_16:448229-448523:+|nuORF	ENST00000460297.1_1_16:448229-448523:+|nuORF	MSMS	HCT116MG_D190212_S2	2	458.76617431640625	2	458.766178	915.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.133	1	58.968	58.468	59.468	-0.1653								0	0	0	0.8837	1	22868	22868		2.5775	0	1				37902	8042	24329	24453	36473	36473					0.05666392622708827
VVIRRRPLF	9	Unmodified	_VVIRRRPLF_					0	0	0		nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	MSMS	HCT116MG_D190212_S4	4	578.375	2	578.377292	1154.74003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.931	1	43.558	43.058	44.058	-0.37373								0	0	0	0.77008	1	16166	16166		0.6015	0	1				37903	4875	24330	24454	36474	36474					0.16885091758717863
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2660217285156	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.65502	1	0.65502	0.15502	1.155	0								0	0	0	0.97045	1	205	205		0.15932	0	1		+		37904	17561	24331	24455	36475	36475					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2660827636719	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1905	1	1.1905	0.69048	1.6905	0								0	0	0	0.97045	1	362	362		0.15932	0	1		+		37905	17561	24331	24455	36476	36476					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2662353515625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7559	1	1.7559	1.2559	2.2559	0								0	0	0	0.97045	1	531	531		0.15932	0	1		+		37906	17561	24331	24455	36477	36477					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2662353515625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.318	1	2.318	1.818	2.818	0								0	0	0	0.97045	1	701	701		0.15932	0	1		+		37907	17561	24331	24455	36478	36478					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2662048339844	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.85	1	2.85	2.35	3.35	0								0	0	0	0.97045	1	857	857		0.15932	0	1		+		37908	17561	24331	24455	36479	36479					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	412.8884582519531	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.9242	1	2.9242	2.4242	3.4242	0								0	0	0	0.96804	1	879	879		0.69767	0.46182	1		+		37909	17561	24331	24455	36480	36480					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2659912109375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3568	1	3.3568	2.8568	3.8568	0								0	0	0	0.96804	1	1011	1011		0.69767	0.46182	1		+		37910	17561	24331	24455	36481	36481					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2663269042969	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.8711	1	3.8711	3.3711	4.3711	0								0	0	0	0.97045	1	1164	1164		0.15932	0	1		+		37911	17561	24331	24455	36482	36482					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2660217285156	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3758	1	4.3758	3.8758	4.8758	0								0	0	0	0.97045	1	1319	1319		0.15932	0	1		+		37912	17561	24331	24455	36483	36483					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2661437988281	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4008	1	5.4008	4.9008	5.9008	0								0	0	0	0.97045	1	1629	1629		0.15932	0	1		+		37913	17561	24331	24455	36484	36484					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.26605224609375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9068	1	5.9068	5.4068	6.4068	0								0	0	0	0.97045	1	1782	1782		0.15932	0	1		+		37914	17561	24331	24455	36485	36485					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2659912109375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4155	1	6.4155	5.9155	6.9155	0								0	0	0	0.96804	1	1935	1935		0.69767	0.46182	1		+		37915	17561	24331	24455	36486	36486					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2661437988281	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9164	1	6.9164	6.4164	7.4164	0								0	0	0	0.97045	1	2089	2089		0.15932	0	1		+		37916	17561	24331	24455	36487	36487					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2660217285156	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4268	1	7.4268	6.9268	7.9268	0								0	0	0	0.96804	1	2244	2244		0.69767	0	1		+		37917	17561	24331	24455	36488	36488					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.26654052734375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9506	1	7.9506	7.4506	8.4506	0								0	0	0	0.96804	1	2401	2401		0.69767	0.46182	1		+		37918	17561	24331	24455	36489	36489					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2663269042969	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4749	1	8.4749	7.9749	8.9749	0								0	0	0	0.97045	1	2561	2561		0.15932	0	1		+		37919	17561	24331	24455	36490	36490					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2662353515625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.0095	1	9.0095	8.5095	9.5095	0								0	0	0	0.97045	1	2726	2726		0.15932	0	1		+		37920	17561	24331	24455	36491	36491					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2659912109375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5399	1	9.5399	9.0399	10.04	0								0	0	0	0.97045	1	2894	2894		0.15932	0	1		+		37921	17561	24331	24455	36492	36492					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.2663269042969	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.076	1	10.076	9.5756	10.576	0								0	0	0	0.97045	1	3075	3075		0.15932	0	1		+		37922	17561	24331	24455	36493	36493					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	413.26605224609375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.49	1	64.49	63.99	64.99	0								0	0	0	0.96804	1	24874	24874		0.69767	0.46182	1		+		37923	17561	24331	24455	36494	36494					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.26593017578125	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.97759	1	0.97133	0.47133	1.4713	-0.00626								0	0	0	0.96804	1	316	316		0.69767	0.24315	1		+		37924	17561	24331	24455	36495	36495					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.2663269042969	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0889	1	2.0646	1.5646	2.5646	-0.024288								0	0	0	0.97045	1	678	678		0.15932	0	1		+		37925	17561	24331	24455	36496	36496					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.2662048339844	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6301	1	2.5897	2.0897	3.0897	-0.040353								0	0	0	0.97045	1	841	841		0.15932	0	1		+		37926	17561	24331	24455	36497	36497					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.26629638671875	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6721	1	3.61	3.11	4.11	-0.062129								0	0	0	0.97045	1	1163	1163		0.15932	0	1		+		37927	17561	24331	24455	36498	36498					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.26611328125	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.1948	1	4.1057	3.6057	4.6057	-0.089082								0	0	0	0.97045	1	1326	1326		0.15932	0	1		+		37928	17561	24331	24455	36499	36499					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.26617431640625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3003	1	5.1522	4.6522	5.6522	-0.14816								0	0	0	0.96804	1	1675	1675		0.69767	0.46182	1		+		37929	17561	24331	24455	36500	36500					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.26605224609375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8268	1	5.6786	5.1786	6.1786	-0.14816								0	0	0	0.97045	1	1847	1847		0.15932	0	1		+		37930	17561	24331	24455	36501	36501					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.2663269042969	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8891	1	6.6919	6.1919	7.1919	-0.19725								0	0	0	0.97045	1	2169	2169		0.15932	0	1		+		37931	17561	24331	24455	36502	36502					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.2661437988281	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4024	1	7.1866	6.6866	7.6866	-0.21581								0	0	0	0.97045	1	2322	2322		0.15932	0	1		+		37932	17561	24331	24455	36503	36503					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.26611328125	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.916	1	7.6848	7.1848	8.1848	-0.23116								0	0	0	0.97045	1	2481	2481		0.15932	0	1		+		37933	17561	24331	24455	36504	36504					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.26617431640625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.419	1	8.1879	7.6879	8.6879	-0.23116								0	0	0	0.97045	1	2634	2634		0.15932	0	1		+		37934	17561	24331	24455	36505	36505					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.2661437988281	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9277	1	8.6837	8.1837	9.1837	-0.24401								0	0	0	0.97045	1	2791	2791		0.15932	0	1		+		37935	17561	24331	24455	36506	36506					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.2659912109375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4713	1	9.2162	8.7162	9.7162	-0.25508								0	0	0	0.97045	1	2961	2961		0.15932	0	1		+		37936	17561	24331	24455	36507	36507					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.26593017578125	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.745	1	63.622	63.122	64.122	-0.12264								0	0	0	0.97045	1	24705	24705		0.15932	0	1		+		37937	17561	24331	24455	36508	36508					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.2659912109375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.361	1	64.245	63.745	64.745	-0.11585								0	0	0	0.97045	1	24912	24912		0.15932	0	1		+		37938	17561	24331	24455	36509	36509					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	413.2661437988281	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.876	1	64.764	64.264	65.264	-0.11256								0	0	0	0.97045	1	25072	25072		0.15932	0	1		+		37939	17561	24331	24455	36510	36510					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2662658691406	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.23047	1	0.29137	-0.20863	0.79137	0.060905								0	0	0	0.97045	1	86	86		0.15932	0	1		+		37940	17561	24331	24455	36511	36511					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2657775878906	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.7778	1	0.8387	0.3387	1.3387	0.060905								0	0	0	0.97045	1	251	251		0.15932	0	1		+		37941	17561	24331	24455	36512	36512					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2660827636719	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.5485	1	1.6094	1.1094	2.1094	0.060905								0	0	0	0.96804	1	476	476		0.69767	0.46182	1		+		37942	17561	24331	24455	36513	36513					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2662353515625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0815	1	2.1368	1.6368	2.6368	0.055284								0	0	0	0.97045	1	631	631		0.15932	0	1		+		37943	17561	24331	24455	36514	36514					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2660217285156	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6043	1	2.6596	2.1596	3.1596	0.055284								0	0	0	0.96804	1	790	790		0.69767	0.46182	1		+		37944	17561	24331	24455	36515	36515					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2656555175781	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.1317	1	3.1769	2.6769	3.6769	0.045237								0	0	0	0.96804	1	948	948		0.69767	0.46182	1		+		37945	17561	24331	24455	36516	36516					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2662048339844	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6984	1	3.7348	3.2348	4.2348	0.036387								0	0	0	0.97045	1	1119	1119		0.15932	0	1		+		37946	17561	24331	24455	36517	36517					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.26629638671875	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.2122	1	4.2409	3.7409	4.7409	0.028732								0	0	0	0.97045	1	1269	1269		0.15932	0	1		+		37947	17561	24331	24455	36518	36518					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2658996582031	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.2892	1	5.3066	4.8066	5.8066	0.017489								0	0	0	0.97045	1	1598	1598		0.15932	0	1		+		37948	17561	24331	24455	36519	36519					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.26580810546875	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8042	1	5.8216	5.3216	6.3216	0.017489								0	0	0	0.97045	1	1757	1757		0.15932	0	1		+		37949	17561	24331	24455	36520	36520					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2662048339844	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8468	1	6.8607	6.3607	7.3607	0.013901								0	0	0	0.97045	1	2072	2072		0.15932	0	1		+		37950	17561	24331	24455	36521	36521					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2661437988281	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3613	1	7.3752	6.8752	7.8752	0.013901								0	0	0	0.97045	1	2227	2227		0.15932	0	1		+		37951	17561	24331	24455	36522	36522					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2662048339844	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8774	1	7.8939	7.3939	8.3939	0.016533								0	0	0	0.97045	1	2383	2383		0.15932	0	1		+		37952	17561	24331	24455	36523	36523					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2662658691406	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9085	1	8.9291	8.4291	9.4291	0.020599								0	0	0	0.97045	1	2693	2693		0.15932	0	1		+		37953	17561	24331	24455	36524	36524					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2660217285156	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4188	1	9.4449	8.9449	9.9449	0.026101								0	0	0	0.97045	1	2848	2848		0.15932	0	1		+		37954	17561	24331	24455	36525	36525					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2662658691406	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9278	1	9.9603	9.4603	10.46	0.032559								0	0	0	0.97045	1	3004	3004		0.15932	0	1		+		37955	17561	24331	24455	36526	36526					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2662658691406	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.442	1	10.482	9.982	10.982	0.039975								0	0	0	0.97045	1	3165	3165		0.15932	0	1		+		37956	17561	24331	24455	36527	36527					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2660827636719	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.962	1	11.009	10.509	11.509	0.04739								0	0	0	0.97045	1	3346	3346		0.15932	0	1		+		37957	17561	24331	24455	36528	36528					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.26611328125	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.48	1	11.527	11.027	12.027	0.04739								0	0	0	0.97045	1	3526	3526		0.15932	0	1		+		37958	17561	24331	24455	36529	36529					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.26605224609375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.558	1	12.62	12.12	13.12	0.06246								0	0	0	0.97045	1	3925	3925		0.15932	0	1		+		37959	17561	24331	24455	36530	36530					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.3071594238281	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.91	1	12.979	12.479	13.479	0.069158								0	0	0	0.97045	1	4061	4061		0.15932	0	1		+		37960	17561	24331	24455	36531	36531					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.26617431640625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.086	1	13.155	12.655	13.655	0.069158								0	0	0	0.97045	1	4128	4128		0.15932	0	1		+		37961	17561	24331	24455	36532	36532					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2663269042969	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.612	1	13.687	13.187	14.187	0.074899								0	0	0	0.97045	1	4329	4329		0.15932	0	1		+		37962	17561	24331	24455	36533	36533					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.26629638671875	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.169	1	14.248	13.748	14.748	0.079683								0	0	0	0.97045	1	4542	4542		0.15932	0	1		+		37963	17561	24331	24455	36534	36534					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2659912109375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.057	1	62.834	62.334	63.334	-0.22315								0	0	0	0.97045	1	24083	24083		0.15932	0	1		+		37964	17561	24331	24455	36535	36535					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2660827636719	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.608	1	63.393	62.893	63.893	-0.21454								0	0	0	0.97045	1	24261	24261		0.15932	0	1		+		37965	17561	24331	24455	36536	36536					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2658996582031	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.172	1	63.966	63.466	64.466	-0.20569								0	0	0	0.96804	1	24432	24432		0.69767	0.53834	1		+		37966	17561	24331	24455	36537	36537					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	413.2659912109375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.698	1	64.497	63.997	64.997	-0.2009								0	0	0	0.97045	1	24589	24589		0.15932	0	1		+		37967	17561	24331	24455	36538	36538					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2662048339844	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.74482	1	0.48025	-0.019746	0.98025	-0.26456								0	0	0	0.96804	1	240	240		0.69767	0.46182	1		+		37968	17561	24331	24455	36539	36539					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.26666259765625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.3102	1	1.0456	0.54561	1.5456	-0.26456								0	0	0	0.96804	1	406	406		0.69767	0.46182	1		+		37969	17561	24331	24455	36540	36540					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.26605224609375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3606	1	2.096	1.596	2.596	-0.26456								0	0	0	0.97045	1	722	722		0.15932	0	1		+		37970	17561	24331	24455	36541	36541					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2662048339844	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8662	1	2.6016	2.1016	3.1016	-0.26456								0	0	0	0.97045	1	880	880		0.15932	0	1		+		37971	17561	24331	24455	36542	36542					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.26611328125	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3758	1	3.1113	2.6113	3.6113	-0.26456								0	0	0	0.97045	1	1039	1039		0.15932	0	1		+		37972	17561	24331	24455	36543	36543					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2658386230469	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.8917	1	3.6272	3.1272	4.1272	-0.26456								0	0	0	0.97045	1	1192	1192		0.15932	0	1		+		37973	17561	24331	24455	36544	36544					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2660827636719	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3961	1	4.1315	3.6315	4.6315	-0.26456								0	0	0	0.96804	1	1351	1351		0.69767	0.46182	1		+		37974	17561	24331	24455	36545	36545					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2662353515625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.911	1	4.6468	4.1468	5.1468	-0.26414								0	0	0	0.97045	1	1508	1508		0.15932	0	1		+		37975	17561	24331	24455	36546	36546					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2662353515625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4305	1	5.1664	4.6664	5.6664	-0.26414								0	0	0	0.96804	1	1661	1661		0.69767	0.46182	1		+		37976	17561	24331	24455	36547	36547					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2660217285156	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9373	1	5.6758	5.1758	6.1758	-0.26151								0	0	0	0.96804	1	1815	1815		0.69767	0.46182	1		+		37977	17561	24331	24455	36548	36548					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2662048339844	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4805	1	7.239	6.739	7.739	-0.24153								0	0	0	0.97045	1	2290	2290		0.15932	0	1		+		37978	17561	24331	24455	36549	36549					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.266357421875	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9971	1	7.7656	7.2656	8.2656	-0.23148								0	0	0	0.96804	1	2445	2445		0.69767	0.46182	1		+		37979	17561	24331	24455	36550	36550					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.26611328125	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5057	1	8.2743	7.7743	8.7743	-0.23148								0	0	0	0.96804	1	2599	2599		0.69767	0.46182	1		+		37980	17561	24331	24455	36551	36551					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2661437988281	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5183	1	9.3086	8.8086	9.8086	-0.20971								0	0	0	0.97045	1	2910	2910		0.15932	0	1		+		37981	17561	24331	24455	36552	36552					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.26629638671875	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.623	1	62.373	61.873	62.873	-0.24919								0	0	0	0.97045	1	23647	23647		0.15932	0	1		+		37982	17561	24331	24455	36553	36553					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2663879394531	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.155	1	62.911	62.411	63.411	-0.24392								0	0	0	0.97045	1	23835	23835		0.15932	0	1		+		37983	17561	24331	24455	36554	36554					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2661437988281	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.777	1	63.538	63.038	64.038	-0.2389								0	0	0	0.97045	1	24037	24037		0.15932	0	1		+		37984	17561	24331	24455	36555	36555					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2662353515625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.3	1	64.066	63.566	64.566	-0.23412								0	0	0	0.96804	1	24208	24208		0.69767	0.2894	1		+		37985	17561	24331	24455	36556	36556					0.1689555795353499
VVITRHTKRK	10	Unmodified	_VVITRHTKRK_					0	0	0			REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	REV__sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	413.2662353515625	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.856	1	64.624	64.124	65.124	-0.2319								0	0	0	0.97045	1	24379	24379		0.15932	0	1		+		37986	17561	24331	24455	36557	36557					0.1689555795353499
VVIVLTKLLVA	11	Unmodified	_VVIVLTKLLVA_					0	0	0		nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	MSMS	HCT116MG_D190212_S4	4	584.4071655273438	2	584.407392	1166.80023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.971	1	13.809	13.309	14.309	-0.16233								0	0	0	0.96208	1	4404	4404		0	0	1				37987	3891	24332	24456	36558	36558					0.22350344578580916
VVKAAPALIDP	11	Unmodified	_VVKAAPALIDP_					0	0	0		nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;TTC21A|p.L505Pfs*116|1|0.3|ENSG00000168026|chr3:39126352-39126353|-/C|frameshift_variant	nc|ENSG00000168026|Q8NDW8|TTC21A	nc|ENSG00000168026|Q8NDW8|TTC21A	MSMS	HCT116MG_D190212_S2	2	547.3325805664062	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.156	1	42.087	41.587	42.587	-0.068199								0	0	0	0.95196	1	15949	15949		5.2969	0.54088	1				37988	9538	24333	24457	36559	36559					0.11167462062553568
VVKEILLML	9	Unmodified	_VVKEILLML_					0	0	0			REV__ENST00000382247.5_1_4:17805055-17805097:-|nuORF	REV__ENST00000382247.5_1_4:17805055-17805097:-|nuORF	MSMS	HCT116MG_D190212_S1	1	353.09857177734375	3	353.22784	1056.66169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.914	1	58.914	58.414	59.414	0								0	0	0	0.7696	1	22707	22707		1.1933	0	1		+		37989	15291	24334	24458	36560	36560					0.13562478338644723
VVKFGGGT	8	Unmodified	_VVKFGGGT_					0	0	0		tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	382.7185363769531	2	382.718696	763.422839	0.051281	1.9626E-05	0.05522	2.1134E-05	0.1065	4.076E-05	382.7185957386994	31.991	0.51802	31.761	31.58	32.098	-0.23009					21	9	3	0	0	0	0.74206	1	11806	11806		18.135	0	1	102860000			37990	18408	24335	24459	36561	36561					0.03166459151532308
VVKKIPLIT	9	Unmodified	_VVKKIPLIT_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;ENST00000497765.1_1_3:183515808-183519351:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MSMS	HCT116MG_D190212_S3	3	505.8513488769531	2	505.852253	1009.68995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.754	1	52.448	51.948	52.948	-0.30639								0	0	0	0.7701	1	19950	19950		0.52476	0.066424	1				37991	4643	24336	24460	36562	36562					0.18549544310224064
VVKKPSNQIH	10	Unmodified	_VVKKPSNQIH_					0	0	0		tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	tr|U7SSX7|U7SSX7_FUSNUZincproteaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01411PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	575.3409423828125	2	575.340572	1148.66659	0.3832	0.00022047	0.31601	0.00018181	0.69921	0.00040228	575.8423290949363	31.11	0.20525	30.74	30.61	30.816	-0.37026					6	3	2	0	0	0	0.73913	1	11286	11286		17.113	0.54702	1	3529400			37992	18425	24337	24461	36563	36563					0.09820498525596122
VVKLISQT	8	Unmodified	_VVKLISQT_					0	0	0			REV__ENST00000415472.6_1_7:127965920-127970913:-|nuORF	REV__ENST00000415472.6_1_7:127965920-127970913:-|nuORF	MSMS	HCT116MG_D190212_S3	3	444.6298828125	2	444.28166	886.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.724	1	26.574	26.074	27.074	-0.14924								0	0	0	0.8837	1	9600	9600		5.7604	0	1		+		37993	15468	24338	24462	36564	36564					0.10095545936940198
VVKPLPPP	8	Unmodified	_VVKPLPPP_					0	0	0		LEPR|p.S541P|1|0.31|ENSG00000116678|chr1:65608770-65608770|T/C|missense_variant	LEPR|p.S541P|1|0.31|ENSG00000116678|chr1:65608770-65608770|T/C|missense_variant	LEPR|p.S541P|1|0.31|ENSG00000116678|chr1:65608770-65608770|T/C|missense_variant	MSMS	HCT116MG_D190212_S3	3	423.5979309082031	2	423.776014	845.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.037	1	55.749	55.249	56.249	-0.28773								0	0	0	0.8837	1	21265	21265		0.79363	0.79363	1				37994	9295	24339	24463	36565	36565					0.10852768633458254
VVKRAGPPTPQ	11	Unmodified	_VVKRAGPPTPQ_					0	0	0			REV__DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	REV__DHX16|p.R868Lfs*15|1|0.04|ENSG00000204560|chr6:30655493-30655493|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	575.3402099609375	2	575.340572	1148.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.977	1	30.716	30.216	31.216	-0.26071								0	0	0	0.91257	1	11300	11300		18.373	0.22675	1		+		37995	10362	24340	24464	36566	36566					0.09820498525596122
VVKRTHKTL	9	Unmodified	_VVKRTHKTL_					0	0	0			REV__ENSG00000153406|ENST00000283429|NMRAL1	REV__ENSG00000153406|ENST00000283429|NMRAL1	MSMS	HCT116MG_D190212_S1	1	361.2330322265625	3	361.232864	1080.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.346	1	40.346	39.846	40.846	0								0	0	0	0.76954	1	15162	15162		2.4985	0	1		+		37996	12654	24341	24465	36567	36567					0.139651062508392
VVKSPKVA	8	Unmodified	_VVKSPKVA_					0	0	0		ENSG00000162383|ENST00000371494|SLC1A7	ENSG00000162383|ENST00000371494|SLC1A7	ENSG00000162383|ENST00000371494|SLC1A7	MSMS	HCT116MG_D190212_S2	2	414.2699890136719	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1416	1	1.1354	0.63535	1.6354	-0.0062599								0	0	0	0.8837	1	369	369		0.52476	0	1				37997	4516	24342	24466	36568	36568					0.10743580628081872
VVKSPKVA	8	Unmodified	_VVKSPKVA_					0	0	0		ENSG00000162383|ENST00000371494|SLC1A7	ENSG00000162383|ENST00000371494|SLC1A7	ENSG00000162383|ENST00000371494|SLC1A7	MSMS	HCT116MG_D190212_S3	3	414.14544677734375	2	414.271096	826.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.053	1	14.128	13.628	14.628	0.074899								0	0	0	0.8837	1	4498	4498		0.52476	0	1				37998	4516	24342	24466	36569	36569					0.10743580628081872
VVKTLLLRM	9	Unmodified	_VVKTLLLRM_					0	0	0		nc|ENSG00000184313|Q68CQ1-1|MROH7;MROH7|p.R1167Efs*23|1|0.13|ENSG00000184313|chr1:54702676-54702676|A/-|frameshift_variant;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;nc|ENSG00000184313|Q68CQ1-2|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MSMS	HCT116MG_D190212_S1	1	536.849609375	2	536.849187	1071.68382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.32	1	11.32	10.82	11.82	0								0	0	0	0.77025	1	3552	3552		0	0	1				37999	9576	24343	24467	36570	36570					0.150847028070757
VVKVLTESV	9	Unmodified	_VVKVLTESV_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-MSMS	HCT116MG_D190212_S1	1	488.3067932128906	2	487.30005	972.585547	0.20019	9.7553E-05	-1.3085	-0.00063764	-1.1083	-0.00054009	487.2986946192799	47.569	1.5035	47.569	46.751	48.254	0					40	29	3	0	0	0	0.74607	1	18041	18041		2.0598	0	1	98325000	+		38000	13941	24344	24468	36571	36571					0.09815797762848888
VVLGDRNGPT	10	Unmodified	_VVLGDRNGPT_					0	0	0			REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant	REV__FCRL4|p.A389V|1|0.38|ENSG00000163518|chr1:157581614-157581614|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	514.2798461914062	2	514.28018	1026.54581	0.14754	7.5876E-05	-0.0074767	-3.8451E-06	0.14006	7.2031E-05	514.2799361920107	26.456	0.41616	26.156	25.869	26.286	-0.30087					12	7	2	0	0	0	0.68623	1	9453	9453		21.537	2.28	1	8630300	+		38001	16816	24345	24469	36572	36572					0.033596708121422125
VVLIKAQI	8	Unmodified	_VVLIKAQI_					0	0	0		ENSG00000122376|ENST00000298786|SHLD2;ENST00000497389.6_1_10:46918355-46938364:+|nuORF;nc|ENSG00000122376|Q86V20|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	ENSG00000122376|ENST00000298786|SHLD2	MSMS	HCT116MG_D190212_S2	2	442.30126953125	2	442.302396	882.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.245	1	62.109	61.609	62.609	-0.13585								0	0	0	0.8837	1	24123	24123		0.79363	0	1				38002	2760	24346	24470	36573	36573					0.14424726696256585
VVLLLLLRH	9	Unmodified	_VVLLLLLRH_					0	0	0		ENSG00000093010|ENST00000361682|COMT	ENSG00000093010|ENST00000361682|COMT	ENSG00000093010|ENST00000361682|COMT	MULTI-MSMS	HCT116MG_D190212_S1	1	538.3697509765625	2	538.371144	1074.72774	0.36838	0.00019833	-1.9394	-0.0010441	-1.571	-0.0008458	538.3702643882202	58.641	0.20365	58.641	58.514	58.717	0					7	3	3	0	0	0	0.76704	1	22624	22624		0.6015	0.6015	1	31860000			38003	1593	24347	24471	36574	36574					0.19336055295684673
VVLLLLLRH	9	Unmodified	_VVLLLLLRH_					0	0	0		ENSG00000093010|ENST00000361682|COMT	ENSG00000093010|ENST00000361682|COMT	ENSG00000093010|ENST00000361682|COMT	MULTI-MATCH	HCT116MG_D190212_S2	2		2	538.371144	1074.72774	0.53878	0.00029006	-3.3574	-0.0018075	-2.8187	-0.0015175	538.3691320539541	58.696	0.20528	58.531	58.403	58.609	-0.1653	-0.05492	-0.0001065	NaN	0.6015	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7320600			38004	1593	24347	24471							0.19336055295684673
VVLLPALVD	9	Unmodified	_VVLLPALVD_					0	0	0		AP5Z1|p.A452V|1|0.19|ENSG00000242802|chr7:4787677-4787677|C/T|missense_variant	AP5Z1|p.A452V|1|0.19|ENSG00000242802|chr7:4787677-4787677|C/T|missense_variant	AP5Z1|p.A452V|1|0.19|ENSG00000242802|chr7:4787677-4787677|C/T|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	469.5484924316406	2	469.799686	937.584819	0.17097	8.0324E-05	-0.42297	-0.00019871	-0.25199	-0.00011839	469.7994396204796	57.636	0.5188	57.636	57.412	57.931	0					13	9	2	0	0	0	0.26328	1	22192	22192		7.9102	0	1	13747000			38005	153	24348	24472	36575	36575					0.11353003113788418
VVLLPALVD	9	Unmodified	_VVLLPALVD_					0	0	0		AP5Z1|p.A452V|1|0.19|ENSG00000242802|chr7:4787677-4787677|C/T|missense_variant	AP5Z1|p.A452V|1|0.19|ENSG00000242802|chr7:4787677-4787677|C/T|missense_variant	AP5Z1|p.A452V|1|0.19|ENSG00000242802|chr7:4787677-4787677|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	469.799686	937.584819	0.2921	0.00013723	-0.51318	-0.00024109	-0.22107	-0.00010386	469.7993989359794	57.879	0.31331	57.704	57.469	57.783	-0.17494	0.034395	-2.6675E-05	NaN	7.9102	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7124900			38006	153	24348	24472							0.11353003113788418
VVLRKLVKIII	11	Unmodified	_VVLRKLVKIII_					0	0	0			REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1	REV__tr|U7T2H4|U7T2H4_FUSNUDUF502domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00571PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	647.4713745117188	2	647.470858	1292.92716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.484	1	48.117	47.617	48.617	-0.36728								0	0	0	0.96208	1	17958	17958		0	0	1		+		38007	17923	24349	24473	36576	36576					0.2924169052362231
VVLSGQNHVP	10	Unmodified	_VVLSGQNHVP_					0	0	0		MMP28|p.G445Dfs*107|1|0.29|ENSG00000271447|chr17:35766729-35766729|C/-|frameshift_variant	MMP28|p.G445Dfs*107|1|0.29|ENSG00000271447|chr17:35766729-35766729|C/-|frameshift_variant	MMP28|p.G445Dfs*107|1|0.29|ENSG00000271447|chr17:35766729-35766729|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	525.2909545898438	2	525.290548	1048.56654	0.36789	0.00019325	0.44532	0.00023392	0.81321	0.00042717	525.2906781612448	26.631	0.2602	26.631	26.501	26.761	0					7	4	2	0	0	0	0.58749	1	9653	9653		29.082	2.8134	1	12526000			38008	9337	24350	24474	36577	36577					0.044202611917853574
VVLSLPPP	8	Unmodified	_VVLSLPPP_					0	0	0		ENST00000267984.3_1_15:81295820-81295997:+|nuORF	ENST00000267984.3_1_15:81295820-81295997:+|nuORF	ENST00000267984.3_1_15:81295820-81295997:+|nuORF	MSMS	HCT116MG_D190212_S1	1	411.2599182128906	2	411.260197	820.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.426	1	23.426	22.926	23.926	0								0	0	0	0.8837	1	8342	8342		11.114	4.7604	1				38009	6910	24351	24475	36578	36578					0.0884077587951424
VVLSLPPP	8	Unmodified	_VVLSLPPP_					0	0	0		ENST00000267984.3_1_15:81295820-81295997:+|nuORF	ENST00000267984.3_1_15:81295820-81295997:+|nuORF	ENST00000267984.3_1_15:81295820-81295997:+|nuORF	MSMS	HCT116MG_D190212_S3	3	411.2599792480469	2	411.260197	820.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.59	1	23.55	23.05	24.05	-0.03968								0	0	0	0.8837	1	8336	8336		11.114	4.7604	1				38010	6910	24351	24475	36579	36579					0.0884077587951424
VVLSLPPP	8	Unmodified	_VVLSLPPP_					0	0	0		ENST00000267984.3_1_15:81295820-81295997:+|nuORF	ENST00000267984.3_1_15:81295820-81295997:+|nuORF	ENST00000267984.3_1_15:81295820-81295997:+|nuORF	MSMS	HCT116MG_D190212_S4	4	411.26025390625	2	411.260197	820.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.319	1	23.071	22.571	23.571	-0.24775								0	0	0	0.8837	1	8158	8158		11.114	4.7604	1				38011	6910	24351	24475	36580	36580					0.0884077587951424
VVLVTGPL	8	Unmodified	_VVLVTGPL_					0	0	0		ENST00000216019.11_1_22:38882394-38883916:-|nuORF;ENST00000396821.7_1_22:38882394-38883916:-|nuORF	ENST00000216019.11_1_22:38882394-38883916:-|nuORF	ENST00000216019.11_1_22:38882394-38883916:-|nuORF	MSMS	HCT116MG_D190212_S4	4	399.2586669921875	2	399.260197	796.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.471	1	40.093	39.593	40.593	-0.37828								0	0	0	0.8837	1	14849	14849		2.8892	0	1				38012	6734	24352	24476	36581	36581					0.09944775879523604
VVMLGTHS	8	Unmodified	_VVMLGTHS_					0	0	0		ENST00000372745.1_1_10:75893850-75896410:-|nuORF	ENST00000372745.1_1_10:75893850-75896410:-|nuORF	ENST00000372745.1_1_10:75893850-75896410:-|nuORF	MSMS	HCT116MG_D190212_S3	3	422.2232360839844	2	422.223288	842.432024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.058	1	61.826	61.326	62.326	-0.23129								0	0	0	0.8837	1	23699	23699		2.5775	0	1				38013	7465	24353	24477	36582	36582					0.004504844455368584
VVNDRSWKV	9	Unmodified	_VVNDRSWKV_					0	0	0		ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	MULTI-MSMS	HCT116MG_D190212_S2	2	551.8041381835938	2	551.803823	1101.59309	0.50581	0.00027911	0.12952	7.147E-05	0.63533	0.00035058	552.3052496058083	32.043	0.25889	31.813	31.631	31.89	-0.23009					7	4	2	0	0	0	0.17903	1	11858	11858		53.317	20.531	1	19332000			38014	4432	24354	24478	36583	36583					0.046359500831158584
VVNDRSWKV	9	Unmodified	_VVNDRSWKV_					0	0	0		ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	MULTI-MSMS	HCT116MG_D190212_S2	2	368.204833984375	3	368.204974	1101.59309	-0.077197	-2.8424E-05	-0.0065948	-2.4282E-06	-0.083792	-3.0853E-05	368.20493743752735	32.026	0.25889	31.796	31.631	31.89	-0.23009					6	4	2	0	0	0	0.43552	1	11869	11869		20.581	9.682	1	14093000			38015	4432	24354	24478	36584	36584					0.046359500831158584
VVNDRSWKV	9	Unmodified	_VVNDRSWKV_					0	0	0		ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	MULTI-MATCH	HCT116MG_D190212_S1	1		2	551.803823	1101.59309	0.53721	0.00029644	0.49749	0.00027452	1.0347	0.00057095	551.8039848066629	31.727	0.1564	31.727	31.596	31.753	0	-0.042985	0.00020048	NaN	53.317	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4701200			38016	4432	24354	24478							0.046359500831158584
VVNDRSWKV	9	Unmodified	_VVNDRSWKV_					0	0	0		ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	MULTI-MATCH	HCT116MG_D190212_S1	1		3	368.204974	1101.59309	-0.073948	-2.7228E-05	-0.45037	-0.00016583	-0.52432	-0.00019306	368.2048053424239	31.727	0.20858	31.727	31.596	31.805	0	-0.034931	-0.00044228	NaN	20.581	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3843300			38017	4432	24354	24478							0.046359500831158584
VVNPKYEGK	9	Unmodified	_VVNPKYEGK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	HCT116MG_D190212_S1	1	517.2874145507812	2	517.287474	1032.5604	0.59522	0.0003079	-0.2354	-0.00012177	0.35982	0.00018613	517.2872132528253	17.367	0.26096	17.367	17.202	17.463	0					9	4	3	0	0	0	0.031831	1	5917	5917		84.522	32.892	1	4729000			38018	4080	24355	24479	36585	36585					0.04541742960282136
VVNQLKKEQKK	11	Unmodified	_VVNQLKKEQKK_					0	0	0		CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant;CEP350|p.Y2613Mfs*8|1|0.07|ENSG00000135837|chr1:180093938-180093938|T/-|frameshift_variant;CEP350|p.I2751Nfs*29|1|0.24|ENSG00000135837|chr1:180094350-180094351|-/A|frameshift_variant;CEP350|p.N2889Ifs*10|1|0.38|ENSG00000135837|chr1:180095671-180095671|A/-|frameshift_variant;ENSG00000135837|ENST00000367607|CEP350	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	CEP350|p.R2078Gfs*6|1|0.43|ENSG00000135837|chr1:180084119-180084119|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	671.4132690429688	2	671.414269	1340.81398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.77	1	56.47	55.97	56.97	-0.3004								0	0	0	0.95925	1	21290	21290		1.4819	0	1				38019	409	24356	24480	36586	36586					0.15720970339725682
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2869262695312	2	513.286943	1024.55933	0.091791	4.7115E-05	-0.033063	-1.6971E-05	0.058728	3.0144E-05	513.286809479543	53.295	0.7233	53.106	52.809	53.533	-0.18922					25	13	3	0	0	0	0.14171	1	20494	20494		49.933	23.049	1	32890000		+	38020	549	24357	24481	36587	36587					0.04803528591378381
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S2	2	1025.567626953125	1	1025.56661	1024.55933	0.41099	0.0004215	0.12025	0.00012333	0.53124	0.00054483	1025.5669045520162	53.336	0.4639	53.147	52.913	53.377	-0.18922					13	8	2	0	0	0	0.0066233	1	20495	20495		123.45	79.044	1	14378000		+	38021	549	24357	24481	36588	36588					0.04803528591378381
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S3	3	513.2861328125	2	513.286943	1024.55933	0.28762	0.00014763	0.13827	7.097E-05	0.42589	0.0002186	513.2869051027985	53.549	0.83452	53.246	52.983	53.817	-0.30305					34	15	3	0	0	0	0.11731	1	20231	20231		54.774	22.468	1	18099000		+	38022	549	24357	24481	36589	36589					0.04803528591378381
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S3	3	1025.5673828125	1	1025.56661	1024.55933	0.69089	0.00070855	-0.081107	-8.3181E-05	0.60978	0.00062537	1025.5664955830207	53.607	0.57446	53.306	53.037	53.612	-0.30074					19	10	2	0	0	0	0.0090481	1	20263	20263		115.69	79.648	1	9207900		+	38023	549	24357	24481	36590	36590					0.04803528591378381
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S4	4	513.2862548828125	2	513.286943	1024.55933	0.28596	0.00014678	0.10355	5.3151E-05	0.38951	0.00019993	513.2868743839414	53.588	0.67675	53.253	52.983	53.66	-0.33473					33	12	4	0	0	0	0.027492	1	19992	19992		88.904	48.946	1	18293000		+	38024	549	24357	24481	36591	36591					0.04803528591378381
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S4	4	1025.5665283203125	1	1025.56661	1024.55933	0.66127	0.00067818	-0.19176	-0.00019666	0.46951	0.00048151	1025.5663178837374	53.615	0.57265	53.281	53.036	53.609	-0.33361					20	10	3	0	0	0	0.007119	1	20007	20007		120.45	76.043	1	7577100		+	38025	549	24357	24481	36592	36592					0.04803528591378381
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1025.56661	1024.55933	0.96591	0.0009906	-0.70798	-0.00072608	0.25793	0.00026452	1025.5659495875636	53.106	0.30747	53.106	52.948	53.255	0	-0.1036	-0.00060435	NaN	123.45	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6584600		+	38026	549	24357	24481							0.04803528591378381
VVPPFLQPE	9	Unmodified	_VVPPFLQPE_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	513.286943	1024.55933	0.493	0.00025305	-0.41278	-0.00021188	0.080221	4.1176E-05	513.2870669223996	53.076	0.51308	53.076	52.845	53.359	0	-0.094285	-0.00050562	NaN	88.904	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14296000		+	38027	549	24357	24481							0.04803528591378381
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S1	1	562.821533203125	2	562.82115	1123.62775	0.4149	0.00023352	0.17859	0.00010051	0.59349	0.00033403	562.8212228765118	55.99	0.25671	55.99	55.862	56.119	0					10	4	3	0	0	0	0.037995	1	21516	21516		96.111	65.474	1	61377000		+	38028	549	24358	24482	36593	36593					0.07087773171224399
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S2	2	562.8213500976562	2	562.82115	1123.62775	0.53288	0.00029992	0.035274	1.9853E-05	0.56816	0.00031977	562.8210814203234	56.158	0.30909	55.975	55.847	56.156	-0.18261					9	5	2	0	0	0	0.029196	1	21668	21668		103.75	31.826	1	63893000		+	38029	549	24358	24482	36594	36594					0.07087773171224399
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S2	2	1124.6373291015625	1	1124.63502	1123.62775	0.66866	0.000752	0.43909	0.00049382	1.1077	0.0012458	1124.6355685811964	56.12	0.25722	55.938	55.847	56.104	-0.18261					8	4	2	0	0	0	0.015946	1	21674	21674		129.77	10.878	1	16136000		+	38030	549	24358	24482	36595	36595					0.07087773171224399
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S3	3	562.8213500976562	2	562.82115	1123.62775	0.50898	0.00028646	-0.083327	-4.6898E-05	0.42565	0.00023957	562.8210766640115	56.25	0.31402	55.966	55.836	56.15	-0.28367					18	5	4	0	0	0	0.060393	1	21372	21372		81.89	46.958	1	13825000		+	38031	549	24358	24482	36596	36596					0.07087773171224399
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S3	3	1124.635986328125	1	1124.63502	1123.62775	0.50028	0.00056264	0.029712	3.3415E-05	0.53	0.00059605	1124.6351472480158	56.25	0.2093	55.966	55.888	56.097	-0.28367					6	3	2	0	0	0	0.042873	1	21378	21378		92.491	10.601	1	2570000		+	38032	549	24358	24482	36597	36597					0.07087773171224399
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S4	4	562.8212280273438	2	562.82115	1123.62775	0.41334	0.00023264	0.084044	4.7302E-05	0.49738	0.00027994	562.8210819531025	56.269	0.58389	55.963	55.616	56.2	-0.30626					15	10	2	0	0	0	0.027291	1	21097	21097		107.19	65.231	1	13398000		+	38033	549	24358	24482	36598	36598					0.07087773171224399
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S4	4	1124.635986328125	1	1124.63502	1123.62775	0.66583	0.00074882	-0.19313	-0.0002172	0.4727	0.00053161	1124.6346994673925	56.269	0.26392	55.963	55.884	56.148	-0.30626					7	4	2	0	0	0	0.029196	1	21115	21115		103.75	21.858	1	2676400		+	38034	549	24358	24482	36599	36599					0.07087773171224399
VVPPSSSL	8	Unmodified	_VVPPSSSL_					0	0	0		nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7;nc|ENSG00000165891|Q96AV8-2|E2F7;E2F7|p.P729Lfs*53|1|0.24|ENSG00000165891|chr12:77025937-77025937|G/-|frameshift_variant	nc|ENSG00000165891|Q96AV8-3|E2F7	nc|ENSG00000165891|Q96AV8-3|E2F7	MSMS	HCT116MG_D190212_S1	1	393.2232360839844	2	393.223811	784.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.78	1	23.78	23.28	24.28	0								0	0	0	0.8837	1	8484	8484		5.7604	0	1				38035	4805	24359	24483	36600	36600					0.03223022086092442
VVPRRRKRLKL	11	Unmodified	_VVPRRRKRLKL_					0	0	0			REV__sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1	REV__sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1	MSMS	HCT116MG_D190212_S1	1	474.21905517578125	3	474.328161	1419.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.173	1	16.173	15.673	16.673	0								0	0	0	0.9619	1	5425	5425		0.094841	0	1		+		38036	17579	24360	24484	36601	36601					0.2694716582398087
VVPRRRKRLKL	11	Unmodified	_VVPRRRKRLKL_					0	0	0			REV__sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1	REV__sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1	MSMS	HCT116MG_D190212_S1	1	474.3288269042969	3	474.328161	1419.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.336	1	16.336	15.836	16.836	0								0	0	0	0.9619	1	5491	5491		0.094841	0	1		+		38037	17579	24360	24484	36602	36602					0.2694716582398087
VVPRRRKRLKL	11	Unmodified	_VVPRRRKRLKL_					0	0	0			REV__sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1	REV__sp|Q6SVX3|US34A_HCMVMUncharacterizedproteinUS34AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US34APE=3SV=1	MSMS	HCT116MG_D190212_S2	2	710.9895629882812	2	710.988604	1419.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.342	1	35.2	34.7	35.7	-0.14245								0	0	0	0.96208	1	13180	13180		0	0	1		+		38038	17579	24360	24484	36603	36603					0.2694716582398087
VVPTVILLLPI	11	Unmodified	_VVPTVILLLPI_					0	0	0			REV__sp|P16789|AN_HCMVAAlkalinenucleaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL98PE=3SV=2	REV__sp|P16789|AN_HCMVAAlkalinenucleaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL98PE=3SV=2	MSMS	HCT116MG_D190212_S4	4	588.903564453125	2	588.901943	1175.78933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.961	1	52.621	52.121	53.121	-0.34023								0	0	0	0.95954	1	19759	19759		1.3295	0	1		+		38039	17559	24361	24485	36604	36604					0.20846942204343577
VVQALLSPV	9	Unmodified	_VVQALLSPV_					0	0	0			REV__ENST00000287025.3_1_8:97270644-97270794:-|nuORF	REV__ENST00000287025.3_1_8:97270644-97270794:-|nuORF	MSMS	HCT116MG_D190212_S2	2	463.28759765625	2	463.289485	924.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.325	1	55.137	54.637	55.637	-0.18797								0	0	0	0.76973	1	21324	21324		1.8442	0.19162	1		+		38040	14733	24362	24486	36605	36605					0.09911832454008618
VVQAPLVQAT	10	Unmodified	_VVQAPLVQAT_					0	0	0		ENST00000486946.1_1_7:150816287-150817669:+|nuORF	ENST00000486946.1_1_7:150816287-150817669:+|nuORF	ENST00000486946.1_1_7:150816287-150817669:+|nuORF	MSMS	HCT116MG_D190212_S4	4	513.7296142578125	2	513.303124	1024.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.707	1	25.417	24.917	25.917	-0.29022								0	0	0	0.87399	1	9123	9123		19.257	6.7254	1				38041	8298	24363	24487	36606	36606					0.0803831599437217
VVQLLRRLA	9	Unmodified	_VVQLLRRLA_					0	0	0			REV__ENSG00000105447|ENST00000253237|GRWD1	REV__ENSG00000105447|ENST00000253237|GRWD1	MULTI-MSMS	HCT116MG_D190212_S2	2	534.3563232421875	2	534.356025	1066.6975	0.52394	0.00027997	0.029682	1.5861E-05	0.55362	0.00029583	534.3558887570468	60.274	1.6023	60.12	59.801	61.404	-0.15441					62	30	3	0	0	0	0.76814	1	23508	23508		0.52476	0	1	64986000	+		38042	11256	24364	24488	36607	36607					0.16681696630530496
VVQMLAKQ	8	Unmodified	_VVQMLAKQ_					0	0	0			REV__nc|ENSG00000196290|Q9GZT8-3|NIF3L1	REV__nc|ENSG00000196290|Q9GZT8-3|NIF3L1	MSMS	HCT116MG_D190212_S4	4	458.7679138183594	2	458.767863	915.521173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.226	1	44.853	44.353	45.353	-0.37266								0	0	0	0.8837	1	16676	16676		4.756	0	1		+		38043	14016	24365	24489	36608	36608					0.06003319405044749
VVQPGATKRR	10	Unmodified	_VVQPGATKRR_					0	0	0			REV__ENST00000473413.1_1_9:117350118-117350310:+|nuORF	REV__ENST00000473413.1_1_9:117350118-117350310:+|nuORF	MSMS	HCT116MG_D190212_S4	4	371.3154602050781	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6795	1	1.415	0.91497	1.915	-0.26456								0	0	0	0.97116	1	514	514		0	0	1		+		38044	15888	24366	24490	36609	36609					0.1112703410267386
VVQPGATKRR	10	Unmodified	_VVQPGATKRR_					0	0	0			REV__ENST00000473413.1_1_9:117350118-117350310:+|nuORF	REV__ENST00000473413.1_1_9:117350118-117350310:+|nuORF	MSMS	HCT116MG_D190212_S4	4	371.10107421875	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0459	1	1.7814	1.2814	2.2814	-0.26456								0	0	0	0.97116	1	624	624		0	0	1		+		38045	15888	24366	24490	36610	36610					0.1112703410267386
VVQPGATKRR	10	Unmodified	_VVQPGATKRR_					0	0	0			REV__ENST00000473413.1_1_9:117350118-117350310:+|nuORF	REV__ENST00000473413.1_1_9:117350118-117350310:+|nuORF	MSMS	HCT116MG_D190212_S4	4	371.3154296875	3	371.228001	1110.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8047	1	6.5546	6.0546	7.0546	-0.25015								0	0	0	0.97116	1	2084	2084		0	0	1		+		38046	15888	24366	24490	36611	36611					0.1112703410267386
VVQQAEEVHRD	11	Unmodified	_VVQQAEEVHRD_					0	0	0			REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	MSMS	HCT116MG_D190212_S1	1	655.6748657226562	2	655.32839	1308.64223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.778	1	37.778	37.278	38.278	0								0	0	0	0.94269	1	14125	14125		10.151	5.2536	1		+		38047	12880	24367	24491	36612	36612					0.0002519358140489203
VVQRLLLRM	9	Unmodified	_VVQRLLLRM_					0	0	0			REV__VWA8|p.L359*|1|0.4|ENSG00000102763|chr13:41883391-41883391|A/-|frameshift_variant	REV__VWA8|p.L359*|1|0.4|ENSG00000102763|chr13:41883391-41883391|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	564.359130859375	2	564.357711	1126.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.265	1	48.949	48.449	49.449	-0.31596								0	0	0	0.7701	1	18548	18548		0.52476	0	1		+		38048	11161	24368	24492	36613	36613					0.14258623412865745
VVQRVEAR	8	Unmodified	_VVQRVEAR_					0	0	0		LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;ENST00000468107.5_1_1:235992309-235996891:-|nuORF;ENST00000468626.2_1_1:235993486-235996891:-|nuORF;LYST|p.V337Sfs*4|1|0.12|ENSG00000143669|chr1:235809809-235809810|-/T|frameshift_variant;LYST|p.N305Kfs*36|1|0.4|ENSG00000143669|chr1:235809903-235809904|-/T|frameshift_variant	LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant	LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	956.5638427734375	1	956.563589	955.556313	0.72743	0.00069583	-0.061986	-5.9294E-05	0.66544	0.00063654	956.5633540866363	49.415	0.46383	49.415	49.183	49.647	0					23	8	4	0	0	0	0.85329	1	18805	18805		4.756	0.42677	1	707780000			38049	3827	24369	24493	36614	36614					0.0767569825721921
VVQRVEAR	8	Unmodified	_VVQRVEAR_					0	0	0		LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.F2078Lfs*38|1|0.35|ENSG00000143669|chr1:235762739-235762739|A/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;ENST00000468107.5_1_1:235992309-235996891:-|nuORF;ENST00000468626.2_1_1:235993486-235996891:-|nuORF;LYST|p.V337Sfs*4|1|0.12|ENSG00000143669|chr1:235809809-235809810|-/T|frameshift_variant;LYST|p.N305Kfs*36|1|0.4|ENSG00000143669|chr1:235809903-235809904|-/T|frameshift_variant	LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant	LYST|p.E1851Dfs*2|1|0.15|ENSG00000143669|chr1:235774994-235774994|T/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	956.563589	955.556313	0.30322	0.00029005	-0.21904	-0.00020952	0.084181	8.0524E-05	956.5632000651049	49.76	0.71498	49.596	49.432	50.147	-0.16369	0.090406	-0.00012678	NaN	4.756	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91780000			38050	3827	24369	24493							0.0767569825721921
VVQSPGLPPAG	11	Unmodified	_VVQSPGLPPAG_					0	0	0			REV__ENSG00000169676|ENST00000304374|DRD5	REV__ENSG00000169676|ENST00000304374|DRD5	MSMS	HCT116MG_D190212_S4	4	511.2863464355469	2	511.287474	1020.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.75	1	24.481	23.981	24.981	-0.26881								0	0	0	0.94012	1	8736	8736		11.495	0.6952	1		+		38051	13256	24370	24494	36615	36615					0.05093742960275449
VVQTIKHTKRK	11	Unmodified	_VVQTIKHTKRK_					0	0	0		PRKD3|p.S406T|1|0.38|ENSG00000115825|chr2:37277946-37277946|A/T|missense_variant	PRKD3|p.S406T|1|0.38|ENSG00000115825|chr2:37277946-37277946|A/T|missense_variant	PRKD3|p.S406T|1|0.38|ENSG00000115825|chr2:37277946-37277946|A/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	669.421630859375	2	669.422428	1336.8303	0.40906	0.00027383	-0.73031	-0.00048889	-0.32125	-0.00021505	669.923239395323	59.674	0.45908	59.514	59.285	59.744	-0.16012					23	9	3	0	0	0	0.74191	1	23091	23091		1.9064	0.57684	1	17421000			38052	9782	24371	24495	36616	36616					0.1753609629647599
VVQTYHGCM	9	Unmodified	_VVQTYHGCM_					0	0	0			REV__nc|ENSG00000164530|Q6UXB8-2|PI16	REV__nc|ENSG00000164530|Q6UXB8-2|PI16	MULTI-SECPEP	HCT116MG_D190212_S3	3	519.78125	2	519.230787	1036.44702	0.27573	0.00014317	-0.5553	-0.00028833	-0.27956	-0.00014516	519.2301757503443	39.337	0.31955	39.035	38.82	39.14	-0.30137					7	5	2	0	0	0	0.26128	1	14548	14548		10.074	2.1638	1	3995800	+		38053	13010	24372	24496	36617	36617					-0.06974391748781272
VVRHQLLKT	9	Unmodified	_VVRHQLLKT_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	HCT116MG_D190212_S1	1	365.5669860839844	3	365.232864	1092.67676	-0.0067868	-2.4788E-06	-0.097202	-3.5501E-05	-0.10399	-3.798E-05	365.2328459362005	21.093	0.21528	21.093	20.904	21.12	0					6	3	2	0	0	0	0.13424	1	7413	7413		51.415	25.147	1	6869900			38054	2959	24373	24497	36618	36618					0.13413106250845885
VVRHQLLKT	9	Unmodified	_VVRHQLLKT_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-SECPEP	HCT116MG_D190212_S1	1	547.76904296875	2	547.345658	1092.67676	0.60319	0.00033015	0.14262	7.8063E-05	0.74581	0.00040822	547.3457616821909	21.061	0.16321	21.061	20.956	21.12	0					4	2	2	0	0	0	0.15759	1	7414	7414		39.95	15.929	1	2995000			38055	2959	24373	24497	36619	36619					0.13413106250845885
VVRPIQLLLLL	11	Unmodified	_VVRPIQLLLLL_					0	0	0		ENST00000454498.6_1_8:19363479-19448754:-|nuORF	ENST00000454498.6_1_8:19363479-19448754:-|nuORF	ENST00000454498.6_1_8:19363479-19448754:-|nuORF	MSMS	HCT116MG_D190212_S4	4	426.2962646484375	3	426.295353	1275.86423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.416	1	48.049	47.549	48.549	-0.36728								0	0	0	0.96208	1	17931	17931		0	0	1				38056	8013	24374	24498	36620	36620					0.23733124735554156
VVRPKDRRV	9	Unmodified	_VVRPKDRRV_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MSMS	HCT116MG_D190212_S1	1	562.853515625	2	562.854181	1123.69381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.341	1	11.341	10.841	11.841	0								0	0	0	0.77025	1	3561	3561		0	0	1				38057	2400	24375	24499	36621	36621					0.13691026856622557
VVRRWRRRRP	10	Unmodified	_VVRRWRRRRP_					0	0	0			REV__ENST00000181839.8_1_7:39989713-39989800:+|nuORF	REV__ENST00000181839.8_1_7:39989713-39989800:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	718.9513549804688	2	718.950344	1435.88614	0.68012	0.00048897	0.24113	0.00017336	0.92125	0.00066233	719.4519719406527	60.851	2.0687	60.851	60.491	62.56	0					93	39	3	0	0	0	0.89438	4	23512	23512;23754;23972;23987		0	0	1	30314000	+		38058	14494	24376	24500	36622;36623;36624;36625	36622					0.18562787047312668
VVSDGALPAG	10	Unmodified	_VVSDGALPAG_					0	0	0		ENST00000369630.7_1_1:113266608-113266695:+|nuORF;ENST00000361886.3_1_1:113264878-113266695:+|nuORF	ENST00000369630.7_1_1:113266608-113266695:+|nuORF	ENST00000369630.7_1_1:113266608-113266695:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	443.23724365234375	2	443.23745	884.460347	0.30398	0.00013474	0.045223	2.0045E-05	0.34921	0.00015478	443.2372692149617	27.679	0.31184	27.491	27.361	27.673	-0.18847					13	5	3	0	0	0	0.32398	1	10002	10002		48.346	2.3249	1	23460000			38059	7366	24377	24501	36626	36626					0.013495056264787308
VVSDGALPAG	10	Unmodified	_VVSDGALPAG_					0	0	0		ENST00000369630.7_1_1:113266608-113266695:+|nuORF;ENST00000361886.3_1_1:113264878-113266695:+|nuORF	ENST00000369630.7_1_1:113266608-113266695:+|nuORF	ENST00000369630.7_1_1:113266608-113266695:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	443.23745	884.460347	0.15916	7.0545E-05	-0.17575	-7.79E-05	-0.016592	-7.3543E-06	443.2372879791679	27.8	0.4112	27.458	27.347	27.758	-0.34201	-0.047906	-9.4724E-05	NaN	48.346	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24485000			38060	7366	24377	24501							0.013495056264787308
VVSGFAKG	8	Unmodified	_VVSGFAKG_					0	0	0		tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	tr|U7SSR6|U7SSR6_FUSNUDNAprotectingproteinDprAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01464PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	764.4303588867188	1	764.430116	763.422839	1.1384	0.00087024	-0.082009	-6.269E-05	1.0564	0.00080755	764.4297750133865	31.991	0.31099	31.761	31.631	31.942	-0.23009					8	5	2	0	0	0	0.69862	1	11825	11825		23.148	6.2061	1	34881000			38061	18421	24378	24502	36627	36627					0.031664591515209395
VVSGGRSM	8	Unmodified	_VVSGGRSM_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1;CYP1B1|p.R290Afs*3|1|0.35|ENSG00000138061|chr2:38074521-38074521|G/-|frameshift_variant;CYP1B1|p.R290Pfs*37|1|0.27|ENSG00000138061|chr2:38074520-38074521|-/G|frameshift_variant;CYP1B1|p.N252Qfs*75|1|0.39|ENSG00000138061|chr2:38074635-38074636|-/G|frameshift_variant	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	HCT116MG_D190212_S2	2	396.7054443359375	2	396.705263	791.395972	0.25059	9.9409E-05	0.70468	0.00027955	0.95526	0.00037896	396.70540445212623	43.561	0.51546	43.487	43.303	43.818	-0.073376					24	9	4	0	0	0	0.74206	1	16520	16520		18.135	8.7875	1	268720000			38062	3525	24379	24503	36628	36628					-0.008069727313113617
VVSGMDGS	8	Unmodified	_VVSGMDGS_					0	0	0			REV__ENST00000587396.1_1_18:47813113-47813998:-|nuORF	REV__ENST00000587396.1_1_18:47813113-47813998:-|nuORF	MSMS	HCT116MG_D190212_S3	3	376.169921875	2	376.168179	750.321804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.982	1	61.751	61.251	62.251	-0.23129								0	0	0	0.8837	1	23668	23668		2.5775	0	1		+		38063	16664	24380	24504	36629	36629					-0.06334360613493573
VVSPGPIP	8	Unmodified	_VVSPGPIP_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1	REV__nc|ENSG00000075651|Q13393-3|PLD1	MSMS	HCT116MG_D190212_S2	2	383.5621643066406	2	383.228897	764.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.641	1	30.372	29.872	30.872	-0.26855								0	0	0	0.75335	1	11274	11274		26.341	5.4701	1		+		38064	17080	24381	24505	36630	36630					0.051596298113167904
VVTATQRR	8	Unmodified	_VVTATQRR_					0	0	0		ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	466.24786376953125	2	465.777608	929.540663	0.10219	4.7598E-05	0.042131	1.9624E-05	0.14432	6.7222E-05	465.77747537604694	44.208	2.867	44.208	43.108	45.975	0					104	54	4	0	0	0	0.83605	2	17161	17161;17172		7.2892	7.2892	1	83001000			38065	7880	24382	24506	36631;36632	36631					0.07307411740168845
VVTEPFRRLL	10	Unmodified	_VVTEPFRRLL_					0	0	0			REV__ENST00000523869.1_2_8:19675786-19680957:+|nuORF	REV__ENST00000523869.1_2_8:19675786-19680957:+|nuORF	MSMS	HCT116MG_D190212_S2	2	615.3721313476562	2	615.371872	1228.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.97	1	40.9	40.4	41.4	-0.069626								0	0	0	0.94107	1	15466	15466		6.7232	0.51738	1		+		38066	11217	24383	24507	36633	36633					0.12397644593784207
VVTFAKWLKVI	11	Unmodified	_VVTFAKWLKVI_					0	0	0			REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2	REV__nc|ENSG00000154743|Q8NCE0-5|TSEN2	MSMS	HCT116MG_D190212_S2	2	652.4127807617188	2	652.410466	1302.80638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.301	1	51.122	50.622	51.622	-0.17868								0	0	0	0.95581	1	19680	19680		3.2813	0.28607	1		+		38067	12685	24384	24508	36634	36634					0.1670886281010553
VVTGNVPL	8	Unmodified	_VVTGNVPL_					0	0	0		nc|ENSG00000169551|Q8WUE5-2|CT55;ENSG00000169551|ENST00000276241|CT55	nc|ENSG00000169551|Q8WUE5-2|CT55	nc|ENSG00000169551|Q8WUE5-2|CT55	MSMS	HCT116MG_D190212_S4	4	399.73834228515625	2	399.739628	797.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.789	1	41.413	40.913	41.913	-0.37637								0	0	0	0.8837	1	15335	15335		2.8892	0	1				38068	5078	24385	24509	36635	36635					0.057870148400297694
VVTIHASL	8	Unmodified	_VVTIHASL_					0	0	0			REV__ENSG00000176253|ENST00000641904|OR4K13	REV__ENSG00000176253|ENST00000641904|OR4K13	MSMS	HCT116MG_D190212_S4	4	420.2513732910156	2	420.252903	838.491253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.213	1	53.888	53.388	54.388	-0.32527								0	0	0	0.8837	1	20264	20264		2.3027	0	1		+		38069	13538	24386	24510	36636	36636					0.06554703731353584
VVVGDLVEV	9	Unmodified	_VVVGDLVEV_					0	0	0		ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;ATP1A1|p.E184G|1|0.06|ENSG00000163399|chr1:116388687-116388687|A/G|missense_variant;nc|ENSG00000163399|P05023-2|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	ENST00000472488.5_1_1:160085570-160106822:+|nuORF	ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	928.534912109375	1	928.534975	927.527698	0.83416	0.00077455	-0.63893	-0.00059327	0.19523	0.00018128	928.5343186568234	53.163	0.26027	52.974	52.809	53.07	-0.18922					7	4	2	0	0	0	0.026974	1	20455	20455		89.427	31.955	1	12000000			38070	935	24387	24511	36637	36637					0.06103535837428353
VVVHKKKRPV	10	Unmodified	_VVVHKKKRPV_					0	0	0		ENST00000495775.1_1_2:148683508-148684840:+|nuORF;nc|ENSG00000121989|P27037-2|ACVR2A;ACVR2A|p.G473Dfs*3|1|0.76|ENSG00000121989|chr2:147927149-147927149|G/-|frameshift_variant;ENSG00000121989|ENST00000241416|ACVR2A	ENST00000495775.1_1_2:148683508-148684840:+|nuORF	ENST00000495775.1_1_2:148683508-148684840:+|nuORF	MSMS	HCT116MG_D190212_S4	4	397.26953125	3	397.267909	1188.7819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.752	1	57.457	56.957	57.957	-0.29465								0	0	0	0.96769	1	21686	21686		0.77653	0.54069	1				38071	33	24388	24512	36638	36638					0.19505647447272167
VVVLATAI	8	Unmodified	_VVVLATAI_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MSMS	HCT116MG_D190212_S1	1	393.2593994140625	2	393.260197	784.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.785	1	45.785	45.285	46.285	0								0	0	0	0.8837	1	17355	17355		2.5775	0	1				38072	4302	24389	24513	36639	36639					0.1049677587949418
VVVLVNRVHLV	11	Unmodified	_VVVLVNRVHLV_					0	0	0		ENSG00000108771|ENST00000251642|DHX58	ENSG00000108771|ENST00000251642|DHX58	ENSG00000108771|ENST00000251642|DHX58	MSMS	HCT116MG_D190212_S1	1	623.9063110351562	2	623.90334	1245.79213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.952	1	10.952	10.452	11.452	0								0	0	0	0.96149	1	3404	3404		0.30703	0.03801	1				38073	2179	24390	24514	36640	36640					0.1790621038185236
VVVPLLLLGGL	11	Unmodified	_VVVPLLLLGGL_					0	0	0		SDF2|p.A2V|1|0.2|ENSG00000132581|chr17:28661872-28661872|G/A|missense_variant	SDF2|p.A2V|1|0.2|ENSG00000132581|chr17:28661872-28661872|G/A|missense_variant	SDF2|p.A2V|1|0.2|ENSG00000132581|chr17:28661872-28661872|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	364.9186706542969	3	364.917882	1091.73182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.634	1	10.634	10.134	11.134	0								0	0	0	0.96208	1	3277	3277		0	0	1				38074	18137	24391	24515	36641	36641					0.1896209999877101
VVVPRDAADTD	11	Unmodified	_VVVPRDAADTD_					0	0	0		nc|ENSG00000157064|Q9BZQ4-2|NMNAT2;ENSG00000157064|ENST00000287713|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	MSMS	HCT116MG_D190212_S4	4	579.2935180664062	2	579.293485	1156.57242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.945	1	10.755	10.255	11.255	-0.18973								0	0	0	0.96208	1	3372	3372		0	0	1				38075	4312	24392	24516	36642	36642					0.00039314912783083855
VVVPRDAADTD	11	Unmodified	_VVVPRDAADTD_					0	0	0		nc|ENSG00000157064|Q9BZQ4-2|NMNAT2;ENSG00000157064|ENST00000287713|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	MSMS	HCT116MG_D190212_S4	4	579.2931518554688	2	579.293485	1156.57242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.514	1	11.332	10.832	11.832	-0.18135								0	0	0	0.96208	1	3559	3559		0	0	1				38076	4312	24392	24516	36643	36643					0.00039314912783083855
VVVPRDAADTD	11	Unmodified	_VVVPRDAADTD_					0	0	0		nc|ENSG00000157064|Q9BZQ4-2|NMNAT2;ENSG00000157064|ENST00000287713|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	MSMS	HCT116MG_D190212_S4	4	579.2937622070312	2	579.293485	1156.57242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.043	1	11.869	11.369	12.369	-0.17441								0	0	0	0.96208	1	3726	3726		0	0	1				38077	4312	24392	24516	36644	36644					0.00039314912783083855
VVVSPGAG	8	Unmodified	_VVVSPGAG_					0	0	0		RPE65|p.Q497K|1|0.3|ENSG00000116745|chr1:68429889-68429889|G/T|missense_variant;ENSG00000116745|ENST00000262340|RPE65	RPE65|p.Q497K|1|0.3|ENSG00000116745|chr1:68429889-68429889|G/T|missense_variant	RPE65|p.Q497K|1|0.3|ENSG00000116745|chr1:68429889-68429889|G/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	685.3887329101562	1	685.387916	684.38064	1.0873	0.00074524	-0.27892	-0.00019117	0.80841	0.00055407	685.3876186438266	29.981	0.6867	29.745	29.239	29.926	-0.23655					26	12	3	0	0	0	0.64761	1	10818	10818		28.173	0	1	15524000			38078	2533	24393	24517	36645	36645					0.025824837431400738
VVVSPGAG	8	Unmodified	_VVVSPGAG_					0	0	0		RPE65|p.Q497K|1|0.3|ENSG00000116745|chr1:68429889-68429889|G/T|missense_variant;ENSG00000116745|ENST00000262340|RPE65	RPE65|p.Q497K|1|0.3|ENSG00000116745|chr1:68429889-68429889|G/T|missense_variant	RPE65|p.Q497K|1|0.3|ENSG00000116745|chr1:68429889-68429889|G/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		1	685.387916	684.38064	0.39689	0.00027202	0.35137	0.00024082	0.74826	0.00051285	685.38803828768	29.844	0.56805	29.543	29.289	29.857	-0.30096	-0.12842	0.00033287	NaN	28.173	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11909000			38079	2533	24393	24517							0.025824837431400738
VVVSPGAG	8	Unmodified	_VVVSPGAG_					0	0	0		RPE65|p.Q497K|1|0.3|ENSG00000116745|chr1:68429889-68429889|G/T|missense_variant;ENSG00000116745|ENST00000262340|RPE65	RPE65|p.Q497K|1|0.3|ENSG00000116745|chr1:68429889-68429889|G/T|missense_variant	RPE65|p.Q497K|1|0.3|ENSG00000116745|chr1:68429889-68429889|G/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	685.387916	684.38064	0.66723	0.00045731	-0.048187	-3.3027E-05	0.61904	0.00042428	685.387749581654	30.084	0.676	29.727	29.233	29.909	-0.3571	0.055271	5.902E-05	NaN	28.173	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14329000			38080	2533	24393	24517							0.025824837431400738
VVVVLILVPLK	11	Unmodified	_VVVVLILVPLK_					0	0	0		ENST00000543406.1_1_11:60708255-60708741:-|nuORF;ENSG00000110446|ENST00000227880|SLC15A3	ENST00000543406.1_1_11:60708255-60708741:-|nuORF	ENST00000543406.1_1_11:60708255-60708741:-|nuORF	MSMS	HCT116MG_D190212_S1	1	397.952392578125	3	397.952815	1190.83662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.45	1	12.45	11.95	12.95	0								0	0	0	0.96192	1	3996	3996		0.08335	0	1				38081	2249	24394	24518	36646	36646					0.24883221475306527
VVVVLVRLGT	10	Unmodified	_VVVVLVRLGT_					0	0	0			REV__VN1R2|p.S106Hfs*21|1|0.32|ENSG00000196131|chr19:53258687-53258687|T/-|frameshift_variant	REV__VN1R2|p.S106Hfs*21|1|0.32|ENSG00000196131|chr19:53258687-53258687|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	352.2381591796875	3	352.237615	1053.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9107	1	1.9107	1.4107	2.4107	0								0	0	0	0.97116	1	575	575		0	0	1		+		38082	14003	24395	24519	36647	36647					0.16631758679159248
VVVVLVRLGT	10	Unmodified	_VVVVLVRLGT_					0	0	0			REV__VN1R2|p.S106Hfs*21|1|0.32|ENSG00000196131|chr19:53258687-53258687|T/-|frameshift_variant	REV__VN1R2|p.S106Hfs*21|1|0.32|ENSG00000196131|chr19:53258687-53258687|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	352.23797607421875	3	352.237615	1053.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3989	1	8.3989	7.8989	8.8989	0								0	0	0	0.97116	1	2539	2539		0	0	1		+		38083	14003	24395	24519	36648	36648					0.16631758679159248
VVVVLVRLGT	10	Unmodified	_VVVVLVRLGT_					0	0	0			REV__VN1R2|p.S106Hfs*21|1|0.32|ENSG00000196131|chr19:53258687-53258687|T/-|frameshift_variant	REV__VN1R2|p.S106Hfs*21|1|0.32|ENSG00000196131|chr19:53258687-53258687|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	352.2378234863281	3	352.237615	1053.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.474	1	10.474	9.9737	10.974	0								0	0	0	0.97116	1	3217	3217		0	0	1		+		38084	14003	24395	24519	36649	36649					0.16631758679159248
VVWFILVHV	9	Unmodified	_VVWFILVHV_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MSMS	HCT116MG_D190212_S3	3	371.2278747558594	3	371.226939	1110.65899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.426	1	35.127	34.627	35.627	-0.29922								0	0	0	0.76991	1	13075	13075		1.1933	0	1				38085	2572	24396	24520	36650	36650					0.10808390995998707
VVWRRRSV	8	Unmodified	_VVWRRRSV_					0	0	0			REV__FLVCR2|p.A86V|1|0.31|ENSG00000119686|chr14:75579229-75579229|C/T|missense_variant	REV__FLVCR2|p.A86V|1|0.31|ENSG00000119686|chr14:75579229-75579229|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	353.21697998046875	3	353.217437	1056.63048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.173	1	45.801	45.301	46.301	-0.37206								0	0	0	0.8837	1	17049	17049		0.40072	0	1		+		38086	16828	24397	24521	36651	36651					0.10443086139412117
VVWVCYSL	8	Unmodified	_VVWVCYSL_					0	0	0			REV__MEGF8|p.D1331Tfs*8|1|0.35|ENSG00000105429|chr19:42353999-42353999|C/-|frameshift_variant	REV__MEGF8|p.D1331Tfs*8|1|0.35|ENSG00000105429|chr19:42353999-42353999|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	484.751220703125	2	484.749139	967.483725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.406	1	34.23	33.73	34.73	-0.17512								0	0	0	0.75335	1	12799	12799		26.341	1.6674	1		+		38087	11254	24398	24522	36652	36652					-0.001317718605491791
VWFRLLLS	8	Unmodified	_VWFRLLLS_					0	0	0			REV__nc|ENSG00000198753|Q9ULL4-2|PLXNB3	REV__nc|ENSG00000198753|Q9ULL4-2|PLXNB3	MSMS	HCT116MG_D190212_S2	2	517.314208984375	2	517.313295	1032.61204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.18	1	11.891	11.391	12.391	-0.28953								0	0	0	0.8837	1	3971	3971		0.79363	0	1		+		38088	14147	24399	24523	36653	36653					0.0970353144487035
VWGCRAPC	8	Unmodified	_VWGCRAPC_					0	0	0		ENST00000510814.5_1_4:185350169-185395199:-|nuORF	ENST00000510814.5_1_4:185350169-185395199:-|nuORF	ENST00000510814.5_1_4:185350169-185395199:-|nuORF	MSMS	HCT116MG_D190212_S1	1	446.2033996582031	2	446.201833	890.389113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.037	1	33.037	32.537	33.537	0								0	0	0	0.8837	1	12212	12212		5.7604	2.1639	1				38089	8499	24400	24524	36654	36654					-0.06046608883548288
VWGCRAPC	8	Unmodified	_VWGCRAPC_					0	0	0		ENST00000510814.5_1_4:185350169-185395199:-|nuORF	ENST00000510814.5_1_4:185350169-185395199:-|nuORF	ENST00000510814.5_1_4:185350169-185395199:-|nuORF	MSMS	HCT116MG_D190212_S4	4	446.203369140625	2	446.201833	890.389113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.83	1	40.451	39.951	40.951	-0.37814								0	0	0	0.8837	1	14993	14993		5.7604	2.8712	1				38090	8499	24400	24524	36655	36655					-0.06046608883548288
VWGQPDQVVY	10	Unmodified	_VWGQPDQVVY_					0	0	0			REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	595.795654296875	2	595.795663	1189.57677	0.69139	0.00041193	-3.2691	-0.0019477	-2.5777	-0.0015358	595.7952414254142	46.408	0.46463	46.408	46.079	46.543	0					21	8	4	0	0	0	0.37629	1	17621	17621		43.858	0	1	61348000	+		38091	17036	24401	24525	36656	36656					-0.010431758736103802
VWGQPDQVVY	10	Unmodified	_VWGQPDQVVY_					0	0	0			REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	595.7957153320312	2	595.795663	1189.57677	0.76691	0.00045692	-0.0022019	-1.3119E-06	0.7647	0.00045561	595.7955832824241	46.454	0.46344	46.343	46.162	46.626	-0.11121					25	8	4	0	0	0	0.28012	1	17674	17674		52.268	8.4101	1	306130000	+		38092	17036	24401	24525	36657	36657					-0.010431758736103802
VWGQPDQVVY	10	Unmodified	_VWGQPDQVVY_					0	0	0			REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	595.7957153320312	2	595.795663	1189.57677	0.73369	0.00043713	-0.31487	-0.0001876	0.41882	0.00024953	595.7953945420741	46.725	0.3127	46.411	46.281	46.594	-0.31405					17	5	4	0	0	0	0.37629	1	17529	17529		43.858	9.4566	1	43583000	+		38093	17036	24401	24525	36658	36658					-0.010431758736103802
VWGQPDQVVY	10	Unmodified	_VWGQPDQVVY_					0	0	0			REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	595.7960815429688	2	595.795663	1189.57677	1.1231	0.00066914	-0.48895	-0.00029131	0.63415	0.00037782	595.7952466886255	46.829	0.36382	46.458	46.276	46.64	-0.37134					9	6	2	0	0	0	0.73913	1	17307	17307		17.113	0	1	8575800	+		38094	17036	24401	24525	36659	36659					-0.010431758736103802
VWGQPDQVVY	10	Unmodified	_VWGQPDQVVY_					0	0	0			REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	595.795663	1189.57677	0.76691	0.00045692	-0.0022019	-1.3119E-06	0.7647	0.00045561	595.7955832824241	46.454	0.46344	46.343	46.162	46.626	-0.11121	-0.061922	0.00028088	NaN	52.268	25	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306130000	+		38095	17036	24401	24525							-0.010431758736103802
VWGQPDQVVY	10	Unmodified	_VWGQPDQVVY_					0	0	0			REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	REV__MST1R|p.R832Q|1|0.35|ENSG00000164078|chr3:49896349-49896349|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	595.795663	1189.57677	0.73369	0.00043713	-0.31487	-0.0001876	0.41882	0.00024953	595.7953945420741	46.725	0.3127	46.411	46.281	46.594	-0.31405	0.0064081	-9.17E-05	NaN	52.268	17	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43583000	+		38096	17036	24401	24525							-0.010431758736103802
VWHSTEHKIA	10	Unmodified	_VWHSTEHKIA_					0	0	0			REV__ENST00000280969.9_1_5:162930139-162930262:+|nuORF	REV__ENST00000280969.9_1_5:162930139-162930262:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	604.3150024414062	2	604.314554	1206.61456	0.4966	0.00030011	0.050637	3.0601E-05	0.54724	0.00033071	604.3148152437287	31.361	0.3134	31.091	30.908	31.221	-0.27028					10	5	3	0	0	0	0.65652	1	11481	11481		24.021	4.6586	1	5027100	+		38097	14714	24402	24526	36660	36660					0.019513351118575883
VWKRWKKRYFV	11	Unmodified	_VWKRWKKRYFV_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;CADPS2|p.I824*|1|0.21|ENSG00000081803|chr7:122438351-122438351|G/-|frameshift_variant;CADPS2|p.D1011Nfs*3|1|0.04|ENSG00000081803|chr7:122388716-122388717|-/ATGTATT|frameshift_variant;CADPS2|p.N1185Tfs*15|1|0.4|ENSG00000081803|chr7:122345632-122345632|T/-|frameshift_variant;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MSMS	HCT116MG_D190212_S1	1	798.4707641601562	2	798.469712	1594.92487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.553	1	47.553	47.053	48.053	0								0	0	0	0.96208	1	18071	18071		0	0	1				38098	9388	24403	24527	36661	36661					0.1512065483848346
VWLERDRPGA	10	Unmodified	_VWLERDRPGA_					0	0	0			REV__ENST00000473766.5_1_1:161123787-161127484:+|nuORF	REV__ENST00000473766.5_1_1:161123787-161127484:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	400.2158203125	3	400.215761	1197.62546	0.11202	4.4834E-05	0.19008	7.6072E-05	0.3021	0.00012091	400.21611868800113	26.243	0.26062	26.094	25.994	26.255	-0.14924					9	4	3	0	0	0	0.79819	1	9430	9430		12.175	1.8595	1	3476500	+		38099	12379	24404	24528	36662	36662					0.03454737486117665
VWSWEWYLK	9	Unmodified	_VWSWEWYLK_					0	0	0		L3MBTL4|p.A51V|1|0.21|ENSG00000154655|chr18:6264014-6264014|G/A|missense_variant	L3MBTL4|p.A51V|1|0.21|ENSG00000154655|chr18:6264014-6264014|G/A|missense_variant	L3MBTL4|p.A51V|1|0.21|ENSG00000154655|chr18:6264014-6264014|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	432.8854675292969	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6941	1	9.6941	9.1941	10.194	0								0	0	0	0.77019	1	2944	2944		0.23584	0	1				38100	9291	24405	24529	36663	36663					-0.002097085972536661
VWSWEWYLK	9	Unmodified	_VWSWEWYLK_					0	0	0		L3MBTL4|p.A51V|1|0.21|ENSG00000154655|chr18:6264014-6264014|G/A|missense_variant	L3MBTL4|p.A51V|1|0.21|ENSG00000154655|chr18:6264014-6264014|G/A|missense_variant	L3MBTL4|p.A51V|1|0.21|ENSG00000154655|chr18:6264014-6264014|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	432.88531494140625	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.7854	1	6.5881	6.0881	7.0881	-0.19725								0	0	0	0.77019	1	2134	2134		0.23584	0	1				38101	9291	24405	24529	36664	36664					-0.002097085972536661
VWVPKLPL	8	Unmodified	_VWVPKLPL_					0	0	0		ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	MSMS	HCT116MG_D190212_S3	3	476.3066101074219	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.043	1	46.729	46.229	47.229	-0.31405								0	0	0	0.8837	1	17655	17655		0.79363	0	1				38102	5630	24406	24530	36665	36665					0.11805030558900853
VWVWVCLRRRL	11	Unmodified	_VWVWVCLRRRL_					0	0	0		ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	743.9374389648438	2	743.434815	1484.85508	0.90519	0.00067295	-0.012436	-9.2454E-06	0.89276	0.00066371	743.4346623093494	54.218	2.0424	54.218	53.307	55.349	0					104	39	4	0	0	0	0.74191	1	20868	20868		0.35063	0.043601	1	320260000			38103	8217	24407	24531	36666	36666					0.1320445289820782
VYAEMQATP	9	Unmodified	_VYAEMQATP_					0	0	0			REV__nc|ENSG00000204131|Q5HYW2-2|NHSL2	REV__nc|ENSG00000204131|Q5HYW2-2|NHSL2	MULTI-MSMS	HCT116MG_D190212_S3	3	1009.4661254882812	1	1009.46591	1008.45863	0.65783	0.00066405	-0.46774	-0.00047217	0.19008	0.00019188	1009.4654030139912	43.676	0.41708	43.37	43.136	43.553	-0.30616					12	7	2	0	0	0	0.16144	1	16312	16312		46.021	3.9264	1	6781400	+		38104	14182	24408	24532	36667	36667					-0.04525871453790842
VYAEMQATP	9	Unmodified	_VYAEMQATP_					0	0	0			REV__nc|ENSG00000204131|Q5HYW2-2|NHSL2	REV__nc|ENSG00000204131|Q5HYW2-2|NHSL2	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		1	1009.46591	1008.45863	0.7761	0.00078345	0.012781	1.2902E-05	0.78889	0.00079635	1009.4661980973739	43.361	0.31237	43.361	43.16	43.472	0	-0.0042355	0.00034287	NaN	46.021	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8414700	+		38105	14182	24408	24532							-0.04525871453790842
VYAEMQATP	9	Unmodified	_VYAEMQATP_					0	0	0			REV__nc|ENSG00000204131|Q5HYW2-2|NHSL2	REV__nc|ENSG00000204131|Q5HYW2-2|NHSL2	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	1009.46591	1008.45863	0.65783	0.00066405	-0.46774	-0.00047217	0.19008	0.00019188	1009.4654030139912	43.676	0.41708	43.37	43.136	43.553	-0.30616	0.0042355	-0.0001422	NaN	46.021	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6781400	+		38106	14182	24408	24532							-0.04525871453790842
VYDTIEKINEY	11	Unmodified	_VYDTIEKINEY_					0	0	0			REV__ENSG00000263961|ENST00000331555|RHEX	REV__ENSG00000263961|ENST00000331555|RHEX	MULTI-MSMS	HCT116MG_D190212_S1	1	693.8438720703125	2	693.843007	1385.67146	0.85819	0.00059545	-0.03819	-2.6498E-05	0.82	0.00056895	693.8431609790637	46.448	0.20612	46.448	46.337	46.543	0					5	3	2	0	0	0	0.59037	1	17639	17639		36.506	3.7205	1	21848000	+		38107	14428	24409	24533	36668	36668					-0.005947069129206284
VYDTIEKINEY	11	Unmodified	_VYDTIEKINEY_					0	0	0			REV__ENSG00000263961|ENST00000331555|RHEX	REV__ENSG00000263961|ENST00000331555|RHEX	MULTI-MSMS	HCT116MG_D190212_S2	2	693.8434448242188	2	693.843007	1385.67146	0.86405	0.00059951	0.0030847	2.1403E-06	0.86713	0.00060165	693.8427995458164	46.557	0.36031	46.445	46.214	46.574	-0.11121					16	6	4	0	0	0	0.59037	1	17760	17760		36.506	3.0613	1	101190000	+		38108	14428	24409	24533	36669	36669					-0.005947069129206284
VYFIWKRFNRH	11	Unmodified	_VYFIWKRFNRH_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MSMS	HCT116MG_D190212_S3	3	522.692626953125	3	522.621122	1564.84154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.07	1	49.755	49.255	50.255	-0.31525								0	0	0	0.96111	1	18871	18871		0.50596	0.41111	1		+		38109	13944	24410	24534	36670	36670					0.08170918390646875
VYFSDRLYSED	11	Unmodified	_VYFSDRLYSED_					0	0	0		ENSG00000070761|ENST00000262498|CFAP20;ENST00000564150.1_1_16:58147931-58149427:-|nuORF	ENSG00000070761|ENST00000262498|CFAP20	ENSG00000070761|ENST00000262498|CFAP20	MSMS	HCT116MG_D190212_S4	4	697.3152465820312	2	697.317157	1392.61976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.62	1	17.449	16.949	17.949	-0.17047								0	0	0	0.94416	1	5858	5858		9.3831	1.2276	1				38110	1243	24411	24535	36671	36671					-0.06084450606840619
VYGAFDPL	8	Unmodified	_VYGAFDPL_					0	0	0		ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	MULTI-MSMS	HCT116MG_D190212_S2	2	881.4409790039062	1	881.440346	880.433069	0.81619	0.00071943	-0.18258	-0.00016094	0.63361	0.00055849	881.440159058813	51.376	0.30889	51.197	51.069	51.378	-0.17868					10	5	2	0	0	0	0.47906	1	19720	19720		42.968	0	1	34907000			38111	3429	24412	24536	36672	36672					-0.0119297791389954
VYHFVRHLK	9	Unmodified	_VYHFVRHLK_					0	0	0			REV__ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	REV__ACACA|p.E2200Gfs*26|1|0.48|ENSG00000278540|chr17:37097953-37097954|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	400.23297119140625	3	400.232975	1197.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.67	1	13.365	12.865	13.865	-0.30453								0	0	0	0.77019	1	4473	4473		0.23584	0	1		+		38112	9830	24413	24537	36673	36673					0.08616525970683142
VYHVENEGAAG	11	Unmodified	_VYHVENEGAAG_					0	0	0		ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	MULTI-MSMS	HCT116MG_D190212_S3	3	1145.523193359375	1	1145.52218	1144.5149	0.50584	0.00057946	0.36571	0.00041893	0.87155	0.00099838	1145.5227234206209	30.307	0.56945	30.058	29.542	30.112	-0.24946					16	10	2	0	0	0	0.59037	1	10982	10982		36.506	1.5741	1	7079600			38113	4122	24414	24538	36674	36674					-0.051575272927721016
VYHVENEGAAG	11	Unmodified	_VYHVENEGAAG_					0	0	0		ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		1	1145.52218	1144.5149	0.44945	0.00051485	0.090369	0.00010352	0.53982	0.00061837	1145.522520057121	30.327	0.43196	29.97	29.597	30.029	-0.3571	-0.043815	-0.00018896	NaN	36.506	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5284200			38114	4122	24414	24538							-0.051575272927721016
VYKRVYRVHQ	10	Unmodified	_VYKRVYRVHQ_					0	0	0		ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	MSMS	HCT116MG_D190212_S4	4	674.3851928710938	2	674.385845	1346.75714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.058	1	47.689	47.189	48.189	-0.36907								0	0	0	0.96377	1	17786	17786		1.6526	0.17072	1				38115	4559	24415	24539	36675	36675					0.09762967573874448
VYKRWKLK	8	Unmodified	_VYKRWKLK_					0	0	0		ENST00000549913.6_1_12:113306162-113306792:+|nuORF	ENST00000549913.6_1_12:113306162-113306792:+|nuORF	ENST00000549913.6_1_12:113306162-113306792:+|nuORF	MSMS	HCT116MG_D190212_S4	4	374.2383117675781	3	374.237838	1119.69168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.733	1	24.464	23.964	24.964	-0.26881								0	0	0	0.8837	1	8730	8730		0.45834	0.18932	1				38116	8748	24416	24540	36676	36676					0.13662598118821734
VYKWKEAV	8	Unmodified	_VYKWKEAV_					0	0	0		ENST00000313860.11_1_4:41689898-41691591:+|nuORF	ENST00000313860.11_1_4:41689898-41691591:+|nuORF	ENST00000313860.11_1_4:41689898-41691591:+|nuORF	MSMS	HCT116MG_D190212_S2	2	511.7847595214844	2	511.78711	1021.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.718	1	26.365	25.865	26.865	-0.35333								0	0	0	0.8396	1	9679	9679		19.439	0.18201	1				38117	7076	24417	24541	36677	36677					0.0497494831122367
VYLKLACLL	9	Unmodified	_VYLKLACLL_					0	0	0			REV__CAPZA3|p.T144Lfs*8|1|0.07|ENSG00000177938|chr12:18738694-18738694|A/-|frameshift_variant	REV__CAPZA3|p.T144Lfs*8|1|0.07|ENSG00000177938|chr12:18738694-18738694|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	518.3172607421875	2	518.317189	1034.61982	0.385	0.00019955	-0.30839	-0.00015984	0.076616	3.9711E-05	518.3170043835621	45.772	1.3195	45.461	44.53	45.849	-0.31094					47	27	2	0	0	0	0.76704	1	16993	16993		0.6015	0	1	41185000	+		38118	10091	24418	24542	36678	36678					0.10389922650097105
VYNDYYEYSEK	11	Unmodified	_VYNDYYEYSEK_					0	0	0		tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	tr|U7T0G1|U7T0G1_FUSNUS1motifdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00806PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	491.5470886230469	3	491.54539	1471.61434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.881	1	50.526	50.026	51.026	-0.35483								0	0	0	0.9593	1	18919	18919		1.4551	0.12547	1				38119	18547	24419	24543	36679	36679					-0.10260174189329518
VYPFPGPI	8	Unmodified	_VYPFPGPI_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S2	2	889.0015869140625	1	889.481817	888.47454	0.99135	0.00088178	-0.24859	-0.00022112	0.74275	0.00066067	889.4816212967252	56.502	0.68371	56.319	56.052	56.736	-0.18261					20	12	2	0	0	0	0.063628	2	21763	21763;21820		108.76	68.31	1	12093000		+	38120	549	24420	24544	36680;36681	36680					0.025842028454235333
VYPFPGPI	8	Unmodified	_VYPFPGPI_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S3	3	889.5040893554688	1	889.481817	888.47454	1.0077	0.00089633	-0.0040539	-3.6059E-06	1.0036	0.00089272	889.4816438208308	56.584	0.67957	56.301	56.045	56.724	-0.28367					23	12	3	0	0	0	0.063628	2	21427	21427;21488		108.76	74.571	1	3837700		+	38121	549	24420	24544	36682;36683	36682					0.025842028454235333
VYPFPGPI	8	Unmodified	_VYPFPGPI_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S4	4	889.4827270507812	1	889.481817	888.47454	0.91932	0.00081772	0.00049242	4.38E-07	0.91982	0.00081816	889.4817368323015	56.585	0.5741	56.278	56.095	56.669	-0.30626					24	10	3	0	0	0	0.063628	1	21225	21225		108.76	65.79	1	4485600		+	38122	549	24420	24544	36684	36684					0.025842028454235333
VYPFPGPI	8	Unmodified	_VYPFPGPI_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MATCH	HCT116MG_D190212_S1	1		1	889.481817	888.47454	0.7148	0.00063581	-0.076554	-6.8093E-05	0.63825	0.00056771	889.4819134660607	56.293	0.36051	56.293	56.119	56.48	0	-0.0048761	1.143E-05	NaN	108.76	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5060200		+	38123	549	24420	24544							0.025842028454235333
VYPFPGPIP	9	Unmodified	_VYPFPGPIP_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S2	2	987.4676513671875	1	986.534581	985.527304	0.89974	0.00088762	-1.7293	-0.001706	-0.82959	-0.00081842	986.5340944009705	56.684	0.42418	56.502	56.312	56.736	-0.18236					10	7	2	0	0	0	0.064873	1	21844	21844		67.413	29.439	1	4219200		+	38124	549	24421	24545	36685	36685					0.033961609082325594
VYPFPGPIPN	10	Unmodified	_VYPFPGPIPN_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	HCT116MG_D190212_S1	1	550.9620971679688	2	550.792392	1099.57023	0.60648	0.00033404	0.2939	0.00016188	0.90037	0.00049592	550.7923062222071	53.012	0.46269	53.012	52.69	53.153	0					11	8	2	0	0	0	0.079351	2	20269	20269;20333		78.149	45.364	1	10286000		+	38125	549	24422	24546	36686;36687	36686					0.024429309656625264
VYPFPGPIPN	10	Unmodified	_VYPFPGPIPN_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MSMS	HCT116MG_D190212_S3	3	550.6449584960938	2	550.792392	1099.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.455	1	53.152	52.652	53.652	-0.30305								0	0	0	0.53351	1	20232	20232		46.021	17.534	1			+	38126	549	24422	24546	36688	36688					0.024429309656625264
VYRPKIQIYRE	11	Unmodified	_VYRPKIQIYRE_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MSMS	HCT116MG_D190212_S2	2	733.4100341796875	2	732.919718	1463.82488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.965	1	42.895	42.395	43.395	-0.069984								0	0	0	0.94755	1	16277	16277		7.609	2.3121	1				38127	3503	24423	24547	36689	36689					0.11152372714013836
VYRRHNQYF	9	Unmodified	_VYRRHNQYF_					0	0	0			REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	MSMS	HCT116MG_D190212_S1	1	428.218017578125	3	428.219506	1281.63669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.698	1	42.698	42.198	43.198	0								0	0	0	0.76991	1	16112	16112		1.1933	0.92432	1		+		38128	11466	24424	24548	36690	36690					0.007135595802765238
VYSDYITT	8	Unmodified	_VYSDYITT_					0	0	0		tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	tr|U7SWQ0|U7SWQ0_FUSNUGlycogensynthaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=glgAPE=3SV=1	MSMS	HCT116MG_D190212_S1	1	481.2293395996094	2	481.22929	960.444028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.727	1	37.727	37.227	38.227	0								0	0	0	0.8837	1	14104	14104		13.508	0	1				38129	18503	24425	24549	36691	36691					-0.037776203302883005
VYSKFGFGLT	10	Unmodified	_VYSKFGFGLT_					0	0	0			REV__ENSG00000204178|ENST00000374343|MACO1	REV__ENSG00000204178|ENST00000374343|MACO1	MSMS	HCT116MG_D190212_S4	4	559.7957763671875	2	559.797675	1117.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.143	1	40.765	40.265	41.265	-0.37732								0	0	0	0.92607	1	15120	15120		10.074	1.3285	1		+		38130	14184	24426	24550	36692	36692					0.026709136201134243
VYTAGGGK	8	Unmodified	_VYTAGGGK_					0	0	0		tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	tr|U7SS28|U7SS28_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01636PE=4SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	752.3946533203125	1	752.39373	751.386454	1.2044	0.0009062	0.13056	9.8233E-05	1.335	0.0010044	752.3937917264053	33.664	0.25988	33.471	33.327	33.587	-0.19297					6	4	2	0	0	0	0.55794	1	12518	12518		36.044	5.8194	1	45381000			38131	18408	24427	24551	36693	36693					0.0008158225481338377
VYTINRIVI	9	Unmodified	_VYTINRIVI_					0	0	0		ENST00000506815.5_3_4:106326917-106395140:-|nuORF	ENST00000506815.5_3_4:106326917-106395140:-|nuORF	ENST00000506815.5_3_4:106326917-106395140:-|nuORF	MSMS	HCT116MG_D190212_S4	4	364.2328796386719	3	364.225486	1089.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.155	1	37.772	37.272	38.272	-0.38283								0	0	0	0.76948	1	13973	13973		2.7352	0	1				38132	8467	24428	24552	36694	36694					0.11338881782398857
VYVHTAAGPPP	11	Unmodified	_VYVHTAAGPPP_					0	0	0		ENST00000608290.1_1_22:46410678-46410942:+|nuORF	ENST00000608290.1_1_22:46410678-46410942:+|nuORF	ENST00000608290.1_1_22:46410678-46410942:+|nuORF	MSMS	HCT116MG_D190212_S2	2	554.7915649414062	2	554.792924	1107.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.237	1	10.955	10.455	11.455	-0.28186								0	0	0	0.94538	1	3609	3609		8.7454	0	1				38133	9126	24429	24553	36695	36695					0.02181145334543544
VYVTYQTWPK	10	Unmodified	_VYVTYQTWPK_					0	0	0			REV__IGF1R|p.A578T|1|0.44|ENSG00000140443|chr15:98913186-98913186|G/A|missense_variant	REV__IGF1R|p.A578T|1|0.44|ENSG00000140443|chr15:98913186-98913186|G/A|missense_variant	MSMS	HCT116MG_D190212_S2	2	429.088623046875	3	428.892284	1283.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.671	1	7.4552	6.9552	7.9552	-0.21581								0	0	0	0.96804	1	2402	2402		0.69767	0	1		+		38134	16896	24430	24554	36696	36696					0.024542567115986458
VYVVLRKLPDE	11	Unmodified	_VYVVLRKLPDE_					0	0	0			REV__ZNRF3|p.P179L|2|0.4|ENSG00000183579|chr22:29043333-29043333|C/T|missense_variant	REV__ZNRF3|p.P179L|2|0.4|ENSG00000183579|chr22:29043333-29043333|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	666.345458984375	2	665.890095	1329.76564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.435	1	24.351	23.851	24.851	-0.083694								0	0	0	0.95521	1	8677	8677		3.5965	0	1		+		38135	18091	24431	24555	36697	36697					0.11394476699842926
VYYIVPPAR	9	Unmodified	_VYYIVPPAR_					0	0	0			REV__ENST00000481257.5_3_19:36501646-36504244:-|nuORF	REV__ENST00000481257.5_3_19:36501646-36504244:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	539.3079223632812	2	539.30821	1076.60187	0.26317	0.00014193	-0.25885	-0.0001396	0.0043193	2.3294E-06	539.3081139805802	49.077	0.30143	48.712	48.565	48.866	-0.365					6	5	2	0	0	0	0.63193	1	18215	18215		9.3474	4.1168	1	2634300	+		38136	15954	24432	24556	36698	36698					0.06662923719591163
WAADEMRDP	9	Unmodified	_WAADEMRDP_					0	0	0			REV__ENST00000393118.6_2_7:134576378-134613620:+|nuORF	REV__ENST00000393118.6_2_7:134576378-134613620:+|nuORF	MSMS	HCT116MG_D190212_S3	3	364.4922180175781	3	364.158924	1089.45494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.83	1	22.811	22.311	23.311	-0.018869								0	0	0	0.76737	1	8030	8030		10.151	5.7444	1		+		38137	15323	24433	24557	36699	36699					-0.08620541227628564
WAAPYGVP	8	Unmodified	_WAAPYGVP_					0	0	0			REV__ENST00000552197.5_1_12:46661279-46661483:-|nuORF	REV__ENST00000552197.5_1_12:46661279-46661483:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	430.2831726074219	2	430.718696	859.422839	-0.11382	-4.9025E-05	0.35714	0.00015383	0.24332	0.0001048	430.71877594215744	53.185	0.31158	52.996	52.809	53.121	-0.18922					11	5	3	0	0	0	0.32917	1	20373	20373		2.8892	2.8892	1	36780000	+		38138	16428	24434	24558	36700	36700					-0.012495408484824111
WAHMHTELGTP	11	Unmodified	_WAHMHTELGTP_					0	0	0			REV__ENST00000345617.7_1_2:239974412-239974691:-|nuORF	REV__ENST00000345617.7_1_2:239974412-239974691:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	640.2999877929688	2	640.298047	1278.58154	0.42918	0.0002748	1.7639	0.0011294	2.1931	0.0014042	640.298920607256	21.259	0.31414	21.277	21.063	21.377	0.018446					9	5	2	0	0	0	0.62391	1	7425	7425		32.786	12.371	1	2203500	+		38139	15011	24435	24559	36701	36701					-0.04660615002535451
WAHMHTELGTP	11	Unmodified	_WAHMHTELGTP_					0	0	0			REV__ENST00000345617.7_1_2:239974412-239974691:-|nuORF	REV__ENST00000345617.7_1_2:239974412-239974691:-|nuORF	MSMS	HCT116MG_D190212_S4	4	640.3004760742188	2	640.298047	1278.58154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.385	1	21.167	20.667	21.667	-0.21832								0	0	0	0.78817	1	7379	7379		34.402	8.1336	1		+		38140	15011	24435	24559	36702	36702					-0.04660615002535451
WAHRRKNTCM	10	Unmodified	_WAHRRKNTCM_					0	0	0			REV__ENST00000514654.5_1_3:130694284-130698131:+|nuORF	REV__ENST00000514654.5_1_3:130694284-130698131:+|nuORF	MSMS	HCT116MG_D190212_S1	1	434.8825378417969	3	434.881731	1301.62336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.91061	1	0.91061	0.41061	1.4106	0								0	0	0	0.96911	1	272	272		0.15932	0	1		+		38141	16201	24436	24560	36703	36703					-0.015383377949774513
WAHSQQRQDPS	11	Unmodified	_WAHSQQRQDPS_					0	0	0		ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14;ADAMTS14|p.L379*|1|0.38|ENSG00000138316|chr10:70732282-70732282|C/-|frameshift_variant;ADAMTS14|p.G708Vfs*9|1|0.36|ENSG00000138316|chr10:70744126-70744126|G/-|frameshift_variant	ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant	ADAMTS14|p.H752Tfs*5|1|0.34|ENSG00000138316|chr10:70745292-70745292|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	670.3103637695312	2	670.310532	1338.60651	0.025262	1.6934E-05	-0.67358	-0.00045151	-0.64832	-0.00043458	670.3099240238469	15.597	0.53701	15.435	15.028	15.565	-0.16173					20	10	3	0	0	0	0.73844	1	4995	4995		7.609	0.50723	1	4119000			38142	44	24437	24561	36704	36704					-0.04924843875596707
WAIFVLLHI	9	Unmodified	_WAIFVLLHI_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MSMS	HCT116MG_D190212_S4	4	371.2274475097656	3	371.226939	1110.65899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.535	1	59.258	58.758	59.758	-0.27731								0	0	0	0.76991	1	22406	22406		1.1933	0	1				38143	2256	24438	24562	36705	36705					0.10808390995998707
WAIFVLLHI	9	Unmodified	_WAIFVLLHI_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MSMS	HCT116MG_D190212_S4	4	371.2272644042969	3	371.226939	1110.65899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.092	1	62.848	62.348	63.348	-0.24392								0	0	0	0.77018	1	23816	23816		0.26902	0	1				38144	2256	24438	24562	36706	36706					0.10808390995998707
WAKDSQFLV	9	Unmodified	_WAKDSQFLV_					0	0	0		NFXL1|p.K549Sfs*54|1|0.19|ENSG00000170448|chr4:47885899-47885899|G/-|frameshift_variant;nc|ENSG00000170448|Q6ZNB6-2|NFXL1;ENSG00000170448|ENST00000507489|NFXL1	NFXL1|p.K549Sfs*54|1|0.19|ENSG00000170448|chr4:47885899-47885899|G/-|frameshift_variant	NFXL1|p.K549Sfs*54|1|0.19|ENSG00000170448|chr4:47885899-47885899|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	365.1645812988281	3	365.194075	1092.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.573	1	58.403	57.903	58.903	-0.1703								0	0	0	0.7696	1	22641	22641		1.1933	0	1				38145	5131	24439	24563	36707	36707					0.01781742960270094
WAKKRLVHC	9	Unmodified	_WAKKRLVHC_					0	0	0			REV__FETUB|p.K146Rfs*4|1|0.53|ENSG00000090512|chr3:186644755-186644755|A/-|frameshift_variant	REV__FETUB|p.K146Rfs*4|1|0.53|ENSG00000090512|chr3:186644755-186644755|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	570.7940063476562	2	570.826578	1139.6386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.951	1	11.951	11.451	12.451	0								0	0	0	0.77025	1	3806	3806		0	0	1		+		38146	10985	24440	24564	36708	36708					0.07436897064530967
WAPWPRPRVR	10	Unmodified	_WAPWPRPRVR_					0	0	0			REV__ENST00000482397.1_1_7:50672830-50674105:-|nuORF	REV__ENST00000482397.1_1_7:50672830-50674105:-|nuORF	MSMS	HCT116MG_D190212_S1	1	660.8757934570312	2	660.875448	1319.73634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.019	1	14.019	13.519	14.519	0								0	0	0	0.97116	1	4568	4568		0	0	1		+		38147	15965	24441	24565	36709	36709					0.08926421984847366
WARGWKSL	8	Unmodified	_WARGWKSL_					0	0	0		nc|ENSG00000167524|Q96LW2-2|RSKR;nc|ENSG00000167524|Q96LW2-3|RSKR;ENSG00000258472|ENST00000531839|unknown;nc|ENSG00000167524|Q96LW2|RSKR;ENSG00000167524|ENST00000301037|RSKR	nc|ENSG00000167524|Q96LW2-2|RSKR	nc|ENSG00000167524|Q96LW2-2|RSKR	MULTI-MSMS	HCT116MG_D190212_S1	1	502.27734375	2	502.277244	1002.53993	0.13112	6.5858E-05	0.48032	0.00024125	0.61143	0.00030711	502.27741346315196	38.986	0.25985	38.986	38.851	39.111	0					9	4	3	0	0	0	0.34844	1	14635	14635		54.774	20.586	1	21920000			38148	4926	24442	24566	36710	36710					0.0387661709112308
WARSLRAPRR	10	Unmodified	_WARSLRAPRR_					0	0	0		ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	MSMS	HCT116MG_D190212_S1	1	634.8761596679688	2	634.875979	1267.73741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.169	1	11.169	10.669	11.669	0								0	0	0	0.97116	1	3491	3491		0	0	1				38149	9124	24443	24567	36711	36711					0.11424636353763162
WARSLRAPRR	10	Unmodified	_WARSLRAPRR_					0	0	0		ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	MSMS	HCT116MG_D190212_S1	1	634.8768310546875	2	634.875979	1267.73741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.775	1	11.775	11.275	12.275	0								0	0	0	0.97116	1	3735	3735		0	0	1				38150	9124	24443	24567	36712	36712					0.11424636353763162
WASKAWGT	8	Unmodified	_WASKAWGT_					0	0	0			REV__nc|ENSG00000005187|Q53FZ2-2|ACSM3	REV__nc|ENSG00000005187|Q53FZ2-2|ACSM3	MSMS	HCT116MG_D190212_S3	3	453.7291564941406	2	453.727052	905.439552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.24	1	27.071	26.571	27.571	-0.16933								0	0	0	0.82692	1	9808	9808		20.454	2.3073	1		+		38151	9837	24444	24568	36713	36713					-0.01695039962521605
WAVRKHLRRL	10	Unmodified	_WAVRKHLRRL_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MSMS	HCT116MG_D190212_S2	2	445.6139831542969	3	445.61419	1333.82074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3992	1	5.2511	4.7511	5.7511	-0.14816								0	0	0	0.97116	1	1707	1707		0	0	1				38152	5858	24445	24569	36714	36714					0.16718372801619807
WAWLWWRRHWR	11	Unmodified	_WAWLWWRRHWR_					0	0	0			REV__WNK4|p.R467Afs*194|2|0.56|ENSG00000126562|chr17:42785399-42785399|G/-|frameshift_variant	REV__WNK4|p.R467Afs*194|2|0.56|ENSG00000126562|chr17:42785399-42785399|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	869.9491577148438	2	869.952553	1737.89055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.848	1	34.848	34.348	35.348	0								0	0	0	0.96208	1	12943	12943		0	0	1		+		38153	18056	24446	24570	36715	36715					0.05112251470222873
WCCHAHDCC	9	Unmodified	_WCCHAHDCC_					0	0	0		ENSG00000188784|ENST00000375116|PLA2G2E;nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000188784|ENST00000375116|PLA2G2E	ENSG00000188784|ENST00000375116|PLA2G2E	MSMS	HCT116MG_D190212_S3	3	539.14453125	2	539.161525	1076.3085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3361	1	5.3536	4.8536	5.8536	0.017489								0	0	0	0.77025	1	1614	1614		0	0	1				38154	4388	24447	24571	36716	36716					-0.22660581260402068
WCCHAHDCC	9	Unmodified	_WCCHAHDCC_					0	0	0		ENSG00000188784|ENST00000375116|PLA2G2E;nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000188784|ENST00000375116|PLA2G2E	ENSG00000188784|ENST00000375116|PLA2G2E	MSMS	HCT116MG_D190212_S3	3	539.1494140625	2	539.161525	1076.3085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4535	1	8.4741	7.9741	8.9741	0.020599								0	0	0	0.77025	1	2557	2557		0	0	1				38155	4388	24447	24571	36717	36717					-0.22660581260402068
WCCHAHDCC	9	Unmodified	_WCCHAHDCC_					0	0	0		ENSG00000188784|ENST00000375116|PLA2G2E;nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000188784|ENST00000375116|PLA2G2E	ENSG00000188784|ENST00000375116|PLA2G2E	MSMS	HCT116MG_D190212_S3	3	539.14453125	2	539.161525	1076.3085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4774	1	8.498	7.998	8.998	0.020599								0	0	0	0.77025	1	2563	2563		0	0	1				38156	4388	24447	24571	36718	36718					-0.22660581260402068
WCCHAHDCC	9	Unmodified	_WCCHAHDCC_					0	0	0		ENSG00000188784|ENST00000375116|PLA2G2E;nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000188784|ENST00000375116|PLA2G2E	ENSG00000188784|ENST00000375116|PLA2G2E	MSMS	HCT116MG_D190212_S3	3	539.1444702148438	2	539.161525	1076.3085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.684	1	9.7166	9.2166	10.217	0.032559								0	0	0	0.77025	1	2925	2925		0	0	1				38157	4388	24447	24571	36719	36719					-0.22660581260402068
WCCHAHDCC	9	Unmodified	_WCCHAHDCC_					0	0	0		ENSG00000188784|ENST00000375116|PLA2G2E;nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000188784|ENST00000375116|PLA2G2E	ENSG00000188784|ENST00000375116|PLA2G2E	MSMS	HCT116MG_D190212_S3	3	539.1494140625	2	539.161525	1076.3085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.163	1	10.195	9.6952	10.695	0.032559								0	0	0	0.77025	1	3072	3072		0	0	1				38158	4388	24447	24571	36720	36720					-0.22660581260402068
WCCHAHDCC	9	Unmodified	_WCCHAHDCC_					0	0	0		ENSG00000188784|ENST00000375116|PLA2G2E;nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000188784|ENST00000375116|PLA2G2E	ENSG00000188784|ENST00000375116|PLA2G2E	MSMS	HCT116MG_D190212_S3	3	539.5033569335938	2	539.161525	1076.3085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.667	1	11.722	11.222	12.222	0.055045								0	0	0	0.77025	1	3589	3589		0	0	1				38159	4388	24447	24571	36721	36721					-0.22660581260402068
WCCHAHDCC	9	Unmodified	_WCCHAHDCC_					0	0	0		ENSG00000188784|ENST00000375116|PLA2G2E;nc|ENSG00000158786|Q9BZM2|PLA2G2F;ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000188784|ENST00000375116|PLA2G2E	ENSG00000188784|ENST00000375116|PLA2G2E	MSMS	HCT116MG_D190212_S3	3	539.1492919921875	2	539.161525	1076.3085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.416	1	13.486	12.986	13.986	0.069158								0	0	0	0.77025	1	4253	4253		0	0	1				38160	4388	24447	24571	36722	36722					-0.22660581260402068
WCCHGHDCCYT	11	Unmodified	_WCCHGHDCCYT_					0	0	0		ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	MSMS	HCT116MG_D190212_S4	4	443.14080810546875	3	443.141894	1326.40385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.046	1	12.881	12.381	13.381	-0.16496								0	0	0	0.96192	1	4077	4077		0.08335	0.08335	1				38161	1223	24448	24572	36723	36723					-0.24629272859988305
WCILHYWWFHR	11	Unmodified	_WCILHYWWFHR_					0	0	0			REV__ENSG00000164023|ENST00000690982|SGMS2	REV__ENSG00000164023|ENST00000690982|SGMS2	MSMS	HCT116MG_D190212_S4	4	823.8933715820312	2	823.895523	1645.77649	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.543	1	48.176	47.676	48.676	-0.36728								0	0	0	0.96141	1	17982	17982		0.35063	0.043601	1		+		38162	12969	24449	24573	36724	36724					-0.02056399406865239
WCLGPWHSP	9	Unmodified	_WCLGPWHSP_					0	0	0			REV__ENST00000498040.5_1_21:45148690-45148846:+|nuORF	REV__ENST00000498040.5_1_21:45148690-45148846:+|nuORF	MSMS	HCT116MG_D190212_S3	3	541.7462158203125	2	541.747462	1081.48037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.531	1	35.232	34.732	35.732	-0.29922								0	0	0	0.64498	1	13108	13108		21.747	4.8044	1		+		38163	16103	24450	24574	36725	36725					-0.05711021914567027
WCRSKKLKA	9	Unmodified	_WCRSKKLKA_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000474311.1_1_3:112724385-112727343:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MSMS	HCT116MG_D190212_S4	4	560.328125	2	560.326411	1118.63827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.411	1	38.029	37.529	38.529	-0.38163								0	0	0	0.76902	1	14076	14076		4.3292	0.73274	1				38164	4612	24451	24575	36726	36726					0.08369477344672305
WDCVCAYM	8	Unmodified	_WDCVCAYM_					0	0	0			REV__nc|ENSG00000079691|Q5VZK9-3|CARMIL1	REV__nc|ENSG00000079691|Q5VZK9-3|CARMIL1	MULTI-MSMS	HCT116MG_D190212_S4	4	990.3516235351562	1	990.351807	989.34453	-0.039688	-3.9305E-05	-0.31548	-0.00031243	-0.35516	-0.00035174	990.3515370911767	14.523	0.66011	14.362	14.165	14.825	-0.16089					18	13	2	0	0	0	0.87576	1	4630	4630		0.79363	0	1	1580500	+		38165	10854	24452	24576	36727	36727					-0.15056800811896665
WDCVCAYM	8	Unmodified	_WDCVCAYM_					0	0	0			REV__nc|ENSG00000079691|Q5VZK9-3|CARMIL1	REV__nc|ENSG00000079691|Q5VZK9-3|CARMIL1	MULTI-SECPEP	HCT116MG_D190212_S4	4	990.4069213867188	1	990.351807	989.34453	-0.039688	-3.9305E-05	-0.31548	-0.00031243	-0.35516	-0.00035174	990.3515370911767	14.523	0.66011	14.362	14.165	14.825	-0.16089					18	13	2	0	0	0	0.33574	1	4569	4569		0.79363	0	1	1580500	+		38166	10854	24452	24576	36728	36728					-0.15056800811896665
WDFGAEVTL	9	Unmodified	_WDFGAEVTL_					0	0	0			REV__DHH|p.A166T|1|0.33|ENSG00000139549|chr12:49091197-49091197|C/T|missense_variant	REV__DHH|p.A166T|1|0.33|ENSG00000139549|chr12:49091197-49091197|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	519.2506713867188	2	519.250557	1036.48656	0.44581	0.00023149	0.22849	0.00011864	0.6743	0.00035013	519.2506583119152	47.036	0.25861	47.036	46.907	47.165	0					6	4	2	0	0	0	0.49914	1	17874	17874		16.942	0	1	15260000	+		38167	10359	24453	24577	36729	36729					-0.03022225202039408
WDGAPTPPSGP	11	Unmodified	_WDGAPTPPSGP_					0	0	0		ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	MSMS	HCT116MG_D190212_S3	3	541.2486572265625	2	541.251089	1080.48762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.992	1	18.068	17.568	18.568	0.076334								0	0	0	0.8787	1	6082	6082		22.736	1.1993	1				38168	7195	24454	24578	36730	36730					-0.04940010833138331
WDKRRWRK	8	Unmodified	_WDKRRWRK_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MSMS	HCT116MG_D190212_S3	3	615.8504638671875	2	615.851973	1229.68939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.693	1	6.7069	6.2069	7.2069	0.013901								0	0	0	0.8837	1	2020	2020		0.69038	0	1				38169	5019	24455	24579	36731	36731					0.08373562433712323
WDLAGGQHLNG	11	Unmodified	_WDLAGGQHLNG_					0	0	0		ENST00000495577.1_1_3:154884707-154886622:+|nuORF;ENSG00000196549|ENST00000360490|MME	ENST00000495577.1_1_3:154884707-154886622:+|nuORF	ENST00000495577.1_1_3:154884707-154886622:+|nuORF	MSMS	HCT116MG_D190212_S4	4	584.2798461914062	2	584.280712	1166.54687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.407	1	46.036	45.536	46.536	-0.37134								0	0	0	0.93295	1	17133	17133		15.248	1.3424	1				38170	6083	24456	24580	36732	36732					-0.02974114818948692
WDLAHLIQLV	10	Unmodified	_WDLAHLIQLV_					0	0	0			REV__ENSG00000169594|ENST00000345382|BNC1	REV__ENSG00000169594|ENST00000345382|BNC1	MSMS	HCT116MG_D190212_S3	3	403.23284912109375	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.1755	1	6.1899	5.6899	6.6899	0.01438								0	0	0	0.97045	1	1864	1864		0.15932	0	1		+		38171	13251	24457	24581	36733	36733					0.08102266811124537
WDLCQCEQG	9	Unmodified	_WDLCQCEQG_					0	0	0		ENST00000419531.2_1_1:59359265-59361990:+|nuORF	ENST00000419531.2_1_1:59359265-59361990:+|nuORF	ENST00000419531.2_1_1:59359265-59361990:+|nuORF	MSMS	HCT116MG_D190212_S4	4	361.13916015625	3	361.140765	1080.40047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.952	1	51.606	51.106	52.106	-0.34538								0	0	0	0.7696	1	19351	19351		2.2828	0	1				38172	7773	24458	24582	36734	36734					-0.13651876370727223
WDTVAFIVFL	10	Unmodified	_WDTVAFIVFL_					0	0	0		nc|ENSG00000267795|K7EJ46|SMIM22;ENSG00000267795|ENST00000586005|SMIM22	nc|ENSG00000267795|K7EJ46|SMIM22	nc|ENSG00000267795|K7EJ46|SMIM22	MSMS	HCT116MG_D190212_S1	1	605.8314819335938	2	605.828975	1209.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.196	1	12.196	11.696	12.696	0								0	0	0	0.96937	1	3899	3899		0.40072	0	1				38173	6649	24459	24583	36735	36735					0.04696059688285459
WDWAYEAILQY	11	Unmodified	_WDWAYEAILQY_					0	0	0			REV__BFAR|p.F347Y|1|0.37|ENSG00000103429|chr16:14664951-14664951|T/A|missense_variant	REV__BFAR|p.F347Y|1|0.37|ENSG00000103429|chr16:14664951-14664951|T/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	729.356689453125	2	729.340435	1456.66632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.487	1	23.239	22.739	23.739	-0.24775								0	0	0	0.95196	1	8226	8226		5.2969	0.39987	1		+		38174	10039	24460	24584	36736	36736					-0.04374965984902701
WDWDDDDDDDY	11	Unmodified	_WDWDDDDDDDY_					0	0	0			REV__RIOK1|p.D69dup|1|0.29|ENSG00000124784|chr6:7393214-7393215|-/ATG|inframe_insertion	REV__RIOK1|p.D69dup|1|0.29|ENSG00000124784|chr6:7393214-7393215|-/ATG|inframe_insertion	MSMS	HCT116MG_D190212_S2	2	737.7320556640625	2	737.731308	1473.44806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.133	1	43.06	42.56	43.56	-0.073376								0	0	0	0.96208	1	16346	16346		0	0	1		+		38175	17471	24461	24585	36737	36737					-0.26972272155853716
WEAVWGPRDS	10	Unmodified	_WEAVWGPRDS_					0	0	0		ENST00000461382.5_1_15:42131111-42133534:+|nuORF	ENST00000461382.5_1_15:42131111-42133534:+|nuORF	ENST00000461382.5_1_15:42131111-42133534:+|nuORF	MSMS	HCT116MG_D190212_S3	3	601.6760864257812	2	601.783087	1201.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.56	1	47.244	46.744	47.744	-0.31525								0	0	0	0.92607	1	17863	17863		10.074	0.6908	1				38176	8054	24462	24586	36738	36738					-0.04109230676203879
WEDMWGDMW	9	Unmodified	_WEDMWGDMW_					0	0	0			REV__nc|ENSG00000106003|Q8NES3-4|LFNG	REV__nc|ENSG00000106003|Q8NES3-4|LFNG	MSMS	HCT116MG_D190212_S4	4	628.2369384765625	2	628.230984	1254.44742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.585	1	63.346	62.846	63.846	-0.2389								0	0	0	0.7701	1	23972	23972		0.52476	0.066424	1		+		38177	17101	24463	24587	36739	36739					-0.16963016819590848
WEDNFVEEEEG	11	Unmodified	_WEDNFVEEEEG_					0	0	0			REV__ENSG00000115649|ENST00000360507|CNPPD1	REV__ENSG00000115649|ENST00000360507|CNPPD1	MSMS	HCT116MG_D190212_S3	3	691.77197265625	2	691.772779	1381.53101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.695	1	50.382	49.882	50.882	-0.31381								0	0	0	0.95113	1	19123	19123		5.7319	0.43497	1		+		38178	11552	24464	24588	36740	36740					-0.144499106371768
WEEPSSGN	8	Unmodified	_WEEPSSGN_					0	0	0		RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant;ENSG00000179051|ENST00000375436|RCC2	RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant	RCC2|p.A423Qfs*56|1|0.13|ENSG00000179051|chr1:17413120-17413120|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	905.3652954101562	1	905.363552	904.356276	0.64639	0.00058522	0.61045	0.00055268	1.2568	0.0011379	905.3640773179845	25.361	0.31223	25.361	25.197	25.509	0					7	5	2	0	0	0	0.061239	1	9162	9162		111.29	61.354	1	3693900			38179	5532	24465	24589	36741	36741					-0.0997282120104046
WEEQRAKF	8	Unmodified	_WEEQRAKF_					0	0	0		nc|ENSG00000204624|Q9P2K9-2|DISP3;ENSG00000204624|ENST00000294484|DISP3	nc|ENSG00000204624|Q9P2K9-2|DISP3	nc|ENSG00000204624|Q9P2K9-2|DISP3	MSMS	HCT116MG_D190212_S3	3	365.18585205078125	3	365.185691	1092.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.698	1	55.41	54.91	55.91	-0.28773								0	0	0	0.8837	1	21129	21129		3.9444	0	1				38180	6344	24466	24590	36742	36742					-0.007323118423073538
WEKKVIEY	8	Unmodified	_WEKKVIEY_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;ENST00000466047.5_1_10:121609046-121633060:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MULTI-MSMS	HCT116MG_D190212_S2	2	548.2999267578125	2	547.797675	1093.5808	0.54632	0.00029927	0.33898	0.00018569	0.88531	0.00048497	548.2995717006693	32.043	0.20752	31.813	31.735	31.942	-0.23009					8	3	3	0	0	0	0.094232	1	11874	11874		96.367	50.346	1	18894000			38181	6174	24467	24591	36743	36743					0.03774913620077314
WEKSHSFDP	9	Unmodified	_WEKSHSFDP_					0	0	0			REV__nc|ENSG00000157613|Q96BA8-2|CREB3L1	REV__nc|ENSG00000157613|Q96BA8-2|CREB3L1	MSMS	HCT116MG_D190212_S2	2	378.17333984375	3	378.173451	1131.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.389	1	20.01	19.51	20.51	-0.37949								0	0	0	0.7689	1	7124	7124		2.7352	0	1		+		38182	12758	24468	24592	36744	36744					-0.06196608458844821
WELSERYLFVV	11	Unmodified	_WELSERYLFVV_					0	0	0		nc|ENSG00000118242|Q8N565-2|MREG;ENSG00000118242|ENST00000263268|MREG	nc|ENSG00000118242|Q8N565-2|MREG	nc|ENSG00000118242|Q8N565-2|MREG	MSMS	HCT116MG_D190212_S3	3	480.9227294921875	3	480.922244	1439.7449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.55	1	53.247	52.747	53.747	-0.30305								0	0	0	0.96111	1	20270	20270		0.50596	0	1				38183	2602	24469	24593	36745	36745					0.04261886320159647
WEQETTRA	8	Unmodified	_WEQETTRA_					0	0	0		ENST00000444527.2_1_8:56367247-56367565:-|nuORF	ENST00000444527.2_1_8:56367247-56367565:-|nuORF	ENST00000444527.2_1_8:56367247-56367565:-|nuORF	MSMS	HCT116MG_D190212_S3	3	510.7395935058594	2	510.740888	1019.46722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.814	1	48.498	47.998	48.998	-0.31596								0	0	0	0.79325	1	18368	18368		23.148	0	1				38184	7944	24470	24594	36746	36746					-0.04173181492956246
WEQGFSQSF	9	Unmodified	_WEQGFSQSF_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L103Ffs*10|1|0.06|ENSG00000168036|chr3:41225020-41225021|-/TTATTTAAACTATTATACACTA|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S1	1	558.2437744140625	2	558.243264	1114.47197	0.27785	0.00015511	0.35527	0.00019833	0.63313	0.00035344	558.2435016353688	48.589	0.25739	48.589	48.46	48.717	0					6	4	2	0	0	0	0.01405	1	18519	18519		103.35	70.568	1	21430000			38185	4976	24471	24595	36747	36747					-0.08068297350178
WEQGFSQSF	9	Unmodified	_WEQGFSQSF_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;CTNNB1|p.L103Ffs*10|1|0.06|ENSG00000168036|chr3:41225020-41225021|-/TTATTTAAACTATTATACACTA|frameshift_variant;CTNNB1|p.M271Wfs*5|1|0.08|ENSG00000168036|chr3:41225733-41225733|A/-|frameshift_variant;CTNNB1|p.L301Hfs*16|1|0.05|ENSG00000168036|chr3:41225827-41225831|TTCAA/-|frameshift_variant	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	HCT116MG_D190212_S3	3	558.2439575195312	2	558.243264	1114.47197	0.63425	0.00035406	-0.17593	-9.8209E-05	0.45832	0.00025586	558.243380427489	48.901	0.31429	48.585	48.449	48.763	-0.31596					10	5	3	0	0	0	0.01405	1	18423	18423		103.35	63.404	1	6317000			38186	4976	24471	24595	36748	36748					-0.08068297350178
WERERPLRYER	11	Unmodified	_WERERPLRYER_					0	0	0		ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MSMS	HCT116MG_D190212_S2	2	795.4161376953125	2	795.418405	1588.82226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.785	1	24.409	23.909	24.909	-0.37672								0	0	0	0.95581	1	8897	8897		3.2813	0	1				38187	6941	24472	24596	36749	36749					0.05139917309065822
WERKRKWCFSR	11	Unmodified	_WERKRKWCFSR_					0	0	0			REV__nc|ENSG00000205482|P0DV79|SPDYE18	REV__nc|ENSG00000205482|P0DV79|SPDYE18	MSMS	HCT116MG_D190212_S1	1	791.41552734375	2	791.414611	1580.81467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.416	1	33.416	32.916	33.916	0								0	0	0	0.9598	1	12366	12366		1.1933	0	1		+		38188	13823	24473	24597	36750	36750					0.047494865078078874
WESNCKFYIQ	10	Carbamidomethyl (C)	_WESNC(Carbamidomethyl (C))KFYIQ_	WESNC(1)KFYIQ		WESNC(48)KFYIQ		0	1	0			REV__nc|ENSG00000182168|O95185-2|UNC5C	REV__nc|ENSG00000182168|O95185-2|UNC5C	MULTI-MSMS	HCT116MG_D190212_S1	1	687.8113403320312	2	687.810987	1373.60742	0.86906	0.00059775	-0.50986	-0.00035069	0.3592	0.00024706	687.8106682111483	17.906	0.26065	17.906	17.724	17.985	0					12	4	4	0	0	0	0.33066	1	6125	6125		47.749	29.376	1	29173000	+		38189	13707	24474	24598	36751	36751	57				-0.06443765550875469
WEWHRDWK	8	Unmodified	_WEWHRDWK_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MSMS	HCT116MG_D190212_S4	4	414.8661804199219	3	414.864952	1241.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.694	1	13.532	13.032	14.032	-0.16233								0	0	0	0.8837	1	4305	4305		0.40072	0.1317	1		+		38190	12832	24475	24599	36752	36752					-0.03809800856856782
WEWILFSA	8	Unmodified	_WEWILFSA_					0	0	0			REV__ENST00000479818.5_1_22:50717015-50717261:-|nuORF	REV__ENST00000479818.5_1_22:50717015-50717261:-|nuORF	MSMS	HCT116MG_D190212_S3	3	351.1800231933594	3	351.179766	1050.51747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.111	1	55.823	55.323	56.323	-0.28773								0	0	0	0.8837	1	21294	21294		1.6526	0	1		+		38191	15941	24476	24600	36753	36753					-0.005770270971424907
WEYPKEHWK	9	Unmodified	_WEYPKEHWK_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MSMS	HCT116MG_D190212_S3	3	434.9958190917969	3	434.880379	1301.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.758	1	13.833	13.333	14.333	0.074899								0	0	0	0.7701	1	4384	4384		0.23584	0.076522	1		+		38192	12721	24477	24601	36754	36754					-0.0194378074540964
WFALDCHERR	10	Unmodified	_WFALDCHERR_					0	0	0		ENST00000470962.1_1_17:29281459-29284884:+|nuORF;ENST00000480980.1_1_17:29281459-29283585:+|nuORF;nc|ENSG00000184060|Q9NPF8-2|ADAP2;ENSG00000184060|ENST00000330889|ADAP2	ENST00000470962.1_1_17:29281459-29284884:+|nuORF	ENST00000470962.1_1_17:29281459-29284884:+|nuORF	MSMS	HCT116MG_D190212_S1	1	444.88018798828125	3	444.880384	1331.61932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.772	1	11.772	11.272	12.272	0								0	0	0	0.97116	1	3734	3734		0	0	1				38193	5755	24478	24602	36755	36755					-0.0332210401707016
WFCAALDSIP	10	Unmodified	_WFCAALDSIP_					0	0	0			REV__ENST00000467101.5_1_20:60776842-60777190:+|nuORF	REV__ENST00000467101.5_1_20:60776842-60777190:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	561.7661743164062	2	561.76806	1121.52157	0.32059	0.0001801	-2.3463	-0.0013181	-2.0257	-0.001138	561.7664719008444	44.751	0.31181	44.751	44.568	44.88	0					6	5	2	0	0	0	0.86339	1	16972	16972		6.7232	0.99131	1	10810000	+		38194	15833	24479	24603	36756	36756					-0.03433305665748776
WFFARDPVRDF	11	Unmodified	_WFFARDPVRDF_					0	0	0		nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1;nc|ENSG00000142186|Q96KG9-5|SCYL1;SCYL1|p.T613Pfs*60|1|0.32|ENSG00000142186|chr11:65537001-65537001|C/-|frameshift_variant;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;SCYL1|p.G159Afs*110|1|0.37|ENSG00000142186|chr11:65526220-65526220|G/-|frameshift_variant	nc|ENSG00000142186|Q96KG9-3|SCYL1	nc|ENSG00000142186|Q96KG9-3|SCYL1	MULTI-SECPEP	HCT116MG_D190212_S3	3	486.19415283203125	3	485.910449	1454.70952	0.15834	7.6939E-05	0.44301	0.00021526	0.60135	0.0002922	485.91096628038673	18.61	0.41659	18.681	18.46	18.877	0.07095					10	7	2	0	0	0	0.36563	1	6300	6300		4.4062	0.28952	1	3704300			38195	3747	24480	24604	36757	36757					0.00035268583019387734
WFHLPEISFDA	11	Unmodified	_WFHLPEISFDA_					0	0	0		ENSG00000171944|ENST00000307388|OR52A5	ENSG00000171944|ENST00000307388|OR52A5	ENSG00000171944|ENST00000307388|OR52A5	MSMS	HCT116MG_D190212_S4	4	681.3319091796875	2	681.32987	1360.64519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.836	1	27.514	27.014	28.014	-0.32157								0	0	0	0.94284	1	9983	9983		10.074	1.3285	1				38196	5224	24481	24605	36758	36758					-0.020709312937697177
WFHRKRFSFYL	11	Unmodified	_WFHRKRFSFYL_					0	0	0		nc|ENSG00000186038|A5X5Y0-2|HTR3E;ENSG00000186038|ENST00000415389|HTR3E	nc|ENSG00000186038|A5X5Y0-2|HTR3E	nc|ENSG00000186038|A5X5Y0-2|HTR3E	MULTI-MSMS	HCT116MG_D190212_S1	1	529.61767578125	3	529.617489	1585.83064	0.31388	0.00016624	0.27102	0.00014354	0.5849	0.00030977	529.6176257735347	22.691	0.46926	22.691	22.324	22.793	0					14	8	2	0	0	0	0.74191	1	7978	7978		0.08335	0	1	8762500			38197	5866	24482	24606	36759	36759					0.06115516016370748
WFINLFILSI	10	Unmodified	_WFINLFILSI_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;DNAH7|p.S3691Afs*11|1|0.37|ENSG00000118997|chr2:195775977-195775977|T/-|frameshift_variant	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	HCT116MG_D190212_S2	2	633.2903442382812	2	633.368267	1264.72198	0.48734	0.00030866	0.89658	0.00056787	1.3839	0.00087653	633.3688099111854	54.618	0.51098	54.428	53.996	54.507	-0.1894					14	9	2	0	0	0	0.30991	1	20900	20900		3.9444	0	1	17086000			38198	2622	24483	24607	36760	36760					0.10020911993365189
WFPEFWQHRFQ	11	Unmodified	_WFPEFWQHRFQ_					0	0	0		nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;GRM1|p.P1015Lfs*16|1|0.39|ENSG00000152822|chr6:146434251-146434251|C/-|frameshift_variant;ENSG00000152822|ENST00000282753|GRM1	nc|ENSG00000152822|Q13255-2|GRM1	nc|ENSG00000152822|Q13255-2|GRM1	MSMS	HCT116MG_D190212_S2	2	536.7786254882812	3	536.589599	1606.74697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.047	1	28.731	28.231	29.231	-0.31613								0	0	0	0.96138	1	10623	10623		0.36667	0.27183	1				38199	4165	24484	24608	36761	36761					-0.0321364015137533
WFQNRRTKWKK	11	Unmodified	_WFQNRRTKWKK_					0	0	0		ENSG00000229544|ENST00000451024|NKX1-2;ENSG00000235608|ENST00000422806|NKX1-1	ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	MSMS	HCT116MG_D190212_S3	3	789.4458618164062	2	789.444226	1576.8739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.512	1	47.197	46.697	47.697	-0.31525								0	0	0	0.95925	1	17844	17844		1.4819	1.1749	1				38200	6494	24485	24609	36762	36762					0.10853705793624613
WFRRRRNQDRP	11	Unmodified	_WFRRRRNQDRP_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000559020.1_1_1:150940136-150940936:-|nuORF;ENST00000557925.1_1_19:8315741-8320784:+|nuORF;ENST00000558501.5_1_19:8275630-8321979:+|nuORF;ENSG00000090661|ENST00000251363|CERS4	ENSG00000143418|ENST00000368954|CERS2;ENST00000557925.1_1_19:8315741-8320784:+|nuORF	ENSG00000143418|ENST00000368954|CERS2	MSMS	HCT116MG_D190212_S1	1	529.955810546875	3	529.622296	1585.84506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.804	1	14.804	14.304	15.304	0								0	0	0	0.96111	1	4873	4873		0.50596	0.41111	1				38201	3811;8798	24486	24610	36763	36763					0.07556981217226166
WFSKKKKKKKK	11	Unmodified	_WFSKKKKKKKK_					0	0	0			REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF	MSMS	HCT116MG_D190212_S4	4	732.4815673828125	2	732.482289	1462.95002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.065	1	59.793	59.293	60.293	-0.27156								0	0	0	0.96208	1	22621	22621		0	0	1		+		38202	15000	24487	24611	36764	36764					0.2370670964103283
WFSSKLFFLP	10	Unmodified	_WFSSKLFFLP_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10;REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MSMS	HCT116MG_D190212_S1	1	636.342529296875	2	636.344792	1270.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.765	1	34.765	34.265	35.265	0								0	0	0	0.94107	1	12910	12910		6.7232	0	1		+		38203	9822;12674	24488	24612	36765	36765					0.05052052442238164
WFTMSFSYY	9	Unmodified	_WFTMSFSYY_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MSMS	HCT116MG_D190212_S1	1	616.2599487304688	2	616.260068	1230.50558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.776	1	40.776	40.276	41.276	0								0	0	0	0.3563	1	15335	15335		36.044	7.5497	1				38204	4400	24489	24613	36766	36766					-0.10045011902616352
WFTMSFSYY	9	Unmodified	_WFTMSFSYY_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MSMS	HCT116MG_D190212_S2	2	616.2604370117188	2	616.260068	1230.50558	0.57958	0.00035717	0.098995	6.1007E-05	0.67858	0.00041818	616.2602608763137	40.769	0.36217	40.699	40.571	40.933	-0.069626					14	6	3	0	0	0	0.24973	1	15389	15389		36.044	12.024	1	82746000			38205	4400	24489	24613	36767	36767					-0.10045011902616352
WFTMSFSYY	9	Unmodified	_WFTMSFSYY_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MSMS	HCT116MG_D190212_S3	3	616.2609252929688	2	616.260068	1230.50558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.107	1	40.805	40.305	41.305	-0.30185								0	0	0	0.76669	1	15282	15282		12.532	1.7076	1				38206	4400	24489	24613	36768	36768					-0.10045011902616352
WFTMSFSYY	9	Unmodified	_WFTMSFSYY_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MATCH	HCT116MG_D190212_S3	3		2	616.260068	1230.50558	0.56265	0.00034674	0.56021	0.00034523	1.1229	0.00069197	616.2603269888571	41.012	0.15625	40.71	40.58	40.736	-0.30185	0.005367	0.00027979	NaN	36.044	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2755500			38207	4400	24489	24613							-0.10045011902616352
WFTQRYREYLQ	11	Unmodified	_WFTQRYREYLQ_					0	0	0		ENST00000521443.1_1_8:125463141-125474348:+|nuORF;TRMT12|p.N369Kfs*12|1|0.36|ENSG00000183665|chr8:124452031-124452032|-/A|frameshift_variant;TRMT12|p.N373Mfs*53|1|0.47|ENSG00000183665|chr8:124452041-124452041|A/-|frameshift_variant;ENSG00000183665|ENST00000328599|TRMT12	ENST00000521443.1_1_8:125463141-125474348:+|nuORF	ENST00000521443.1_1_8:125463141-125474348:+|nuORF	MSMS	HCT116MG_D190212_S4	4	795.3955688476562	2	795.396607	1588.77866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.476	1	59.199	58.699	59.699	-0.27731								0	0	0	0.95954	1	22382	22382		1.3295	0	1				38208	5731	24490	24614	36769	36769					0.00782307811937244
WFTWVFRRR	9	Unmodified	_WFTWVFRRR_					0	0	0			REV__ENST00000479578.5_1_1:110198981-110200495:+|nuORF	REV__ENST00000479578.5_1_1:110198981-110200495:+|nuORF	MSMS	HCT116MG_D190212_S1	1	451.9159240722656	3	451.915758	1352.72544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.283	1	11.283	10.783	11.783	0								0	0	0	0.77025	1	3537	3537		0	0	1		+		38209	15939	24491	24615	36770	36770					0.06319019610555188
WFVWLVFIQWR	11	Unmodified	_WFVWLVFIQWR_					0	0	0			REV__ENSG00000125975|ENST00000444723|C20orf173	REV__ENSG00000125975|ENST00000444723|C20orf173	MSMS	HCT116MG_D190212_S2	2	790.5892333984375	2	790.432264	1578.84998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.608	1	42.538	42.038	43.038	-0.069984								0	0	0	0.9598	1	16132	16132		1.1933	0.23107	1		+		38210	11827	24492	24616	36771	36771					0.08370472307251475
WFWKLVPARYR	11	Unmodified	_WFWKLVPARYR_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MSMS	HCT116MG_D190212_S2	2	761.4305419921875	2	761.427513	1520.84047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.487	1	32.257	31.757	32.757	-0.23009								0	0	0	0.92235	1	12022	12022		17.113	11.381	1				38211	9435	24493	24617	36772	36772					0.1008870402172306
WFWKPRYK	8	Unmodified	_WFWKPRYK_					0	0	0		ENST00000531184.5_1_8:144640550-144641727:+|nuORF;ENSG00000104518|ENST00000262580|GSDMD	ENST00000531184.5_1_8:144640550-144641727:+|nuORF	ENST00000531184.5_1_8:144640550-144641727:+|nuORF	MSMS	HCT116MG_D190212_S2	2	605.8312377929688	2	605.829643	1209.64473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.395	1	13.09	12.59	13.59	-0.30453								0	0	0	0.8837	1	4380	4380		0.69038	0	1				38212	1938	24494	24618	36773	36773					0.0482973856769604
WFYGPEYQLV	10	Unmodified	_WFYGPEYQLV_					0	0	0		DSEL|p.S342Y|1|0.36|ENSG00000171451|chr18:67513614-67513614|G/T|missense_variant	DSEL|p.S342Y|1|0.36|ENSG00000171451|chr18:67513614-67513614|G/T|missense_variant	DSEL|p.S342Y|1|0.36|ENSG00000171451|chr18:67513614-67513614|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	651.31396484375	2	651.313689	1300.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.664	1	56.481	55.981	56.981	-0.18261								0	0	0	0.92272	1	21867	21867		10.824	0.75	1				38213	733	24495	24619	36774	36774					-0.025457186967742018
WFYIASAFR	9	Unmodified	_WFYIASAFR_					0	0	0		ORM2|p.F69Lfs*29|1|0.26|ENSG00000228278|chr9:114330524-114330524|T/-|frameshift_variant;ENSG00000229314|ENST00000259396|ORM1;ENSG00000228278|ENST00000431067|ORM2	ORM2|p.F69Lfs*29|1|0.26|ENSG00000228278|chr9:114330524-114330524|T/-|frameshift_variant	ORM2|p.F69Lfs*29|1|0.26|ENSG00000228278|chr9:114330524-114330524|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	580.7982177734375	2	580.798009	1159.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.487	1	56.203	55.703	56.703	-0.28367								0	0	0	0.76592	1	21445	21445		15.248	1.7406	1				38214	6492	24496	24620	36775	36775					0.008057530597852747
WFYRNYIV	8	Unmodified	_WFYRNYIV_					0	0	0		ENST00000548455.5_1_12:95650374-95660159:+|nuORF	ENST00000548455.5_1_12:95650374-95660159:+|nuORF	ENST00000548455.5_1_12:95650374-95660159:+|nuORF	MSMS	HCT116MG_D190212_S4	4	580.7982788085938	2	580.798009	1159.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.554	1	56.248	55.748	56.748	-0.30626								0	0	0	0.8837	1	21203	21203		13.508	2.0132	1				38215	8737	24497	24621	36776	36776					0.008057530597852747
WGEEQNLQ	8	Unmodified	_WGEEQNLQ_					0	0	0		ENST00000585207.5_1_17:15603592-15604566:+|nuORF;ENST00000585171.5_1_17:15603407-15638248:+|nuORF	ENST00000585207.5_1_17:15603592-15604566:+|nuORF	ENST00000585207.5_1_17:15603592-15604566:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	502.2283935546875	2	502.227613	1002.44067	0.50629	0.00025427	-0.14618	-7.3417E-05	0.36011	0.00018085	502.2280079636864	30.652	0.20811	30.652	30.555	30.763	0					5	3	2	0	0	0	0.30703	1	11279	11279		12.532	0	1	1786200			38216	8986	24498	24622	36777	36777					-0.06044870384289425
WGGGEAAA	8	Unmodified	_WGGGEAAA_					0	0	0			REV__ENSG00000164040|ENST00000296425|PGRMC2	REV__ENSG00000164040|ENST00000296425|PGRMC2	MULTI-MSMS	HCT116MG_D190212_S2	2	718.3162841796875	1	718.31548	717.308203	1.1043	0.00079324	0.029281	2.1033E-05	1.1336	0.00081428	718.3154378524745	32.088	0.41498	31.858	31.683	32.098	-0.23009					10	7	2	0	0	0	0.2535	1	11867	11867		63.394	9.8182	1	19190000	+		38217	12970	24499	24623	36778	36778					-0.0617585033044179
WGIENMCSVG	10	Unmodified	_WGIENMCSVG_					0	0	0			REV__ENSG00000153208|ENST00000295408|MERTK	REV__ENSG00000153208|ENST00000295408|MERTK	MSMS	HCT116MG_D190212_S1	1	365.8247985839844	3	365.824777	1094.4525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.101	1	43.101	42.601	43.601	0								0	0	0	0.95507	1	16274	16274		1.7423	0	1		+		38218	12646	24500	24624	36779	36779					-0.09094712956971307
WGISKEELFQV	11	Unmodified	_WGISKEELFQV_					0	0	0		ENSG00000144026|ENST00000295208|ZNF514	ENSG00000144026|ENST00000295208|ZNF514	ENSG00000144026|ENST00000295208|ZNF514	MSMS	HCT116MG_D190212_S1	1	668.3524780273438	2	668.350803	1334.68705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.555	1	46.555	46.055	47.055	0								0	0	0	0.93456	1	17667	17667		14.405	2.2306	1				38219	3845	24501	24625	36780	36780					0.03309624394751154
WGLKWVLPPV	10	Unmodified	_WGLKWVLPPV_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	HCT116MG_D190212_S1	1	1194.7060546875	1	1194.70338	1193.6961	0.58214	0.00069549	1.2042	0.0014387	1.7864	0.0021342	1194.7048240039016	49.291	0.46392	49.291	49.131	49.595	0					13	8	2	0	0	0	0.88673	1	18791	18791		1.8442	1.2427	1	18292000	+		38220	14069	24502	24626	36781	36781					0.1070006254171858
WGMAQPGG	8	Unmodified	_WGMAQPGG_					0	0	0		SLC12A9|p.L559Afs*76|1|0.32|ENSG00000146828|chr7:100861867-100861868|-/G|frameshift_variant	SLC12A9|p.L559Afs*76|1|0.32|ENSG00000146828|chr7:100861867-100861868|-/G|frameshift_variant	SLC12A9|p.L559Afs*76|1|0.32|ENSG00000146828|chr7:100861867-100861868|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	402.17974853515625	2	402.178881	802.343209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5614	1	8.582	8.082	9.082	0.020599								0	0	0	0.8837	1	2584	2584		0.79363	0	1				38221	18154	24503	24627	36782	36782					-0.06586930794117052
WGRKRRWRRRV	11	Unmodified	_WGRKRRWRRRV_					0	0	0		CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	CENPB|p.E438Kfs*43|1|0.63|ENSG00000125817|chr20:3785172-3785172|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	806.4888305664062	2	806.487625	1610.9607	0.7643	0.0006164	0.043999	3.5485E-05	0.8083	0.00065188	806.9892408508275	59.755	0.56026	59.755	59.426	59.986	0					34	21	2	0	0	0	0.74191	2	22986	22986;23072		0	0	1	1276300			38222	400	24504	24628	36783;36784	36783					0.1796554985869534
WGRRRKLRRLN	11	Unmodified	_WGRRRKLRRLN_					0	0	0		nc|ENSG00000123965|A8MQ11|PMS2P5	nc|ENSG00000123965|A8MQ11|PMS2P5	nc|ENSG00000123965|A8MQ11|PMS2P5	MSMS	HCT116MG_D190212_S2	2	755.9696655273438	2	755.968734	1509.92291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.929	1	35.801	35.301	36.301	-0.12799								0	0	0	0.96149	1	13419	13419		0.30703	0	1				38223	9442	24505	24629	36785	36785					0.18835038873271515
WGRWLRTWLWK	11	Unmodified	_WGRWLRTWLWK_					0	0	0			REV__chr16:2992834-2992931|185|13.76|0.81|4.09|+|1|GREP1,GREP1|1	REV__chr16:2992834-2992931|185|13.76|0.81|4.09|+|1|GREP1,GREP1|1	MSMS	HCT116MG_D190212_S2	2	794.43798828125	2	794.438412	1586.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.693	1	46.582	46.082	47.082	-0.11121								0	0	0	0.96149	1	17792	17792		0.30703	0	1		+		38224	10184	24506	24630	36786	36786					0.0923150877029002
WGRWLRTWLWK	11	Unmodified	_WGRWLRTWLWK_					0	0	0			REV__chr16:2992834-2992931|185|13.76|0.81|4.09|+|1|GREP1,GREP1|1	REV__chr16:2992834-2992931|185|13.76|0.81|4.09|+|1|GREP1,GREP1|1	MSMS	HCT116MG_D190212_S4	4	794.0934448242188	2	794.438412	1586.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.015	1	49.656	49.156	50.156	-0.35878								0	0	0	0.96149	1	18569	18569		0.30703	0	1		+		38225	10184	24506	24630	36787	36787					0.0923150877029002
WGSAPRPASCP	11	Unmodified	_WGSAPRPASCP_					0	0	0		SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|6|1|sense	SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|6|1|sense	SVA_D_dup628|chr7:140430960-140432406:+|1.004965212380795|0.4952733165024275|1.02|477.0|6|1|sense	MSMS	HCT116MG_D190212_S2	2	376.7683410644531	3	376.846681	1127.51821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.85	1	11.56	11.06	12.06	-0.28953								0	0	0	0.95636	1	3843	3843		1.2148	0.14337	1				38226	18243	24507	24631	36788	36788					-0.040445557197472226
WGVPTGPR	8	Unmodified	_WGVPTGPR_					0	0	0		ENST00000548759.1_1_12:113495266-113495848:+|nuORF	ENST00000548759.1_1_12:113495266-113495848:+|nuORF	ENST00000548759.1_1_12:113495266-113495848:+|nuORF	MSMS	HCT116MG_D190212_S4	4	435.23504638671875	2	435.235045	868.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6527	1	8.432	7.932	8.932	-0.22071								0	0	0	0.8837	1	2642	2642		0.79363	0	1				38227	8740	24508	24632	36789	36789					0.016046662743860907
WGWEWRRKRWR	11	Unmodified	_WGWEWRRKRWR_					0	0	0			REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MSMS	HCT116MG_D190212_S2	2	851.4527587890625	2	851.452917	1700.89128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.588	1	39.51	39.01	40.01	-0.077835								0	0	0	0.96208	1	14904	14904		0	0	1		+		38228	15749	24509	24633	36790	36790					0.06887046119254592
WHEFFDWSL	9	Unmodified	_WHEFFDWSL_					0	0	0			REV__ENST00000484787.1_1_6:31602229-31602409:+|nuORF	REV__ENST00000484787.1_1_6:31602229-31602409:+|nuORF	MSMS	HCT116MG_D190212_S1	1	422.8568420410156	3	422.857463	1265.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.264	1	11.264	10.764	11.764	0								0	0	0	0.77008	1	3529	3529		0.26902	0	1		+		38229	15770	24510	24634	36791	36791					-0.07159445045090251
WHNSQWLE	8	Unmodified	_WHNSQWLE_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	MSMS	HCT116MG_D190212_S3	3	550.249755859375	2	550.251423	1098.48829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.697	1	36.396	35.896	36.896	-0.30113								0	0	0	0.8837	1	13568	13568		10.183	1.5901	1				38230	1327	24511	24635	36792	36792					-0.05701171393434379
WHNSQWLE	8	Unmodified	_WHNSQWLE_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	MSMS	HCT116MG_D190212_S4	4	550.2509765625	2	550.251423	1098.48829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.653	1	36.268	35.768	36.768	-0.38486								0	0	0	0.8837	1	13421	13421		10.183	1.5901	1				38231	1327	24511	24635	36793	36793					-0.05701171393434379
WHRLLLLLV	9	Unmodified	_WHRLLLLLV_					0	0	0			REV__ENSG00000093010|ENST00000361682|COMT	REV__ENSG00000093010|ENST00000361682|COMT	MSMS	HCT116MG_D190212_S4	4	388.25408935546875	3	388.253488	1161.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.933	1	51.587	51.087	52.087	-0.34538								0	0	0	0.77018	1	19344	19344		0.26902	0	1		+		38232	11020	24512	24636	36794	36794					0.16423457669998243
WHRLLLLLV	9	Unmodified	_WHRLLLLLV_					0	0	0			REV__ENSG00000093010|ENST00000361682|COMT	REV__ENSG00000093010|ENST00000361682|COMT	MSMS	HCT116MG_D190212_S4	4	388.25390625	3	388.253488	1161.73863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.634	1	62.385	61.885	62.885	-0.24919								0	0	0	0.77025	1	23651	23651		0	0	1		+		38233	11020	24512	24636	36795	36795					0.16423457669998243
WHRQWLKLYTR	11	Unmodified	_WHRQWLKLYTR_					0	0	0			REV__ENST00000450656.5_1_4:57843902-57844849:+|nuORF	REV__ENST00000450656.5_1_4:57843902-57844849:+|nuORF	MSMS	HCT116MG_D190212_S3	3	793.93701171875	2	793.938776	1585.863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.996	1	45.684	45.184	46.184	-0.31212								0	0	0	0.96149	1	17238	17238		0.30703	0.30703	1		+		38234	15706	24513	24637	36796	36796					0.09350303419341799
WHTWQSPYVV	10	Unmodified	_WHTWQSPYVV_					0	0	0		ENSG00000175077|ENST00000312295|RTP1	ENSG00000175077|ENST00000312295|RTP1	ENSG00000175077|ENST00000312295|RTP1	MSMS	HCT116MG_D190212_S1	1	434.8822021484375	3	434.880379	1301.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.5091	1	6.5091	6.0091	7.0091	0								0	0	0	0.96911	1	1961	1961		0.15932	0.01943	1				38235	5362	24514	24638	36797	36797					-0.019437807453869027
WIGGSPPA	8	Unmodified	_WIGGSPPA_					0	0	0		nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	MSMS	HCT116MG_D190212_S2	2	392.7030334472656	2	392.703046	783.391539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.559	1	40.489	39.989	40.989	-0.069626								0	0	0	0.8837	1	15299	15299		14.582	0	1				38236	6348	24515	24639	36798	36798					-0.008821138825737762
WIGLRKAKLVH	11	Unmodified	_WIGLRKAKLVH_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MSMS	HCT116MG_D190212_S2	2	661.0985107421875	2	660.916781	1319.81901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.078	1	47.945	47.445	48.445	-0.13281								0	0	0	0.94943	1	18357	18357		8.1555	0.54658	1		+		38237	12625	24516	24640	36799	36799					0.17189318993018787
WIGPFIAP	8	Unmodified	_WIGPFIAP_					0	0	0			REV__ENST00000489870.1_1_1:156305554-156307990:-|nuORF	REV__ENST00000489870.1_1_1:156305554-156307990:-|nuORF	MSMS	HCT116MG_D190212_S1	1	450.75408935546875	2	450.752539	899.490525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.385	1	15.385	14.885	15.885	0								0	0	0	0.8837	1	5107	5107		2.8892	0	1		+		38238	16028	24517	24641	36800	36800					0.036759090823238694
WIHLRRKKRER	11	Unmodified	_WIHLRRKKRER_					0	0	0		ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	MSMS	HCT116MG_D190212_S1	1	789.4841918945312	2	789.484217	1576.95388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.864	1	19.864	19.364	20.364	0								0	0	0	0.96208	1	6912	6912		0	0	1				38239	2978	24518	24642	36801	36801					0.18848192187488166
WILFKNVKF	9	Unmodified	_WILFKNVKF_					0	0	0		tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	tr|U7SN73|U7SN73_FUSNUAbi-likeproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01691PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S3	3	597.2108764648438	2	597.855327	1193.6961	0.62273	0.00037231	1.2149	0.00072631	1.8376	0.0010986	597.855921794336	49.299	0.57944	48.983	48.552	49.132	-0.31596					17	10	2	0	0	0	0.26676	1	18393	18393		2.0598	0.21551	1	3768200			38240	18356	24519	24643	36802	36802					0.1070006254171858
WILRVLIKPP	10	Unmodified	_WILRVLIKPP_					0	0	0		E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	618.4058837890625	2	617.905351	1233.79615	0.45313	0.00027999	0.56866	0.00035138	1.0218	0.00063137	618.4060465779464	58.553	0.35443	58.553	58.312	58.666	0					9	6	2	0	0	0	0.89248	1	22561	22561		0.45834	0	1	52561000			38241	746	24520	24644	36803	36803					0.18860299875541386
WILRVLIKPP	10	Unmodified	_WILRVLIKPP_					0	0	0		E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	E2F8|p.T831Ifs*21|1|0.05|ENSG00000129173|chr11:19224770-19224771|-/TTTAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	618.4060668945312	2	617.905351	1233.79615	0.48763	0.00030131	-0.65406	-0.00040415	-0.16643	-0.00010284	618.4060738862231	58.598	0.30749	58.428	58.297	58.604	-0.16992					7	5	2	0	0	0	0.89272	1	22681	22681		0.40072	0	1	16079000			38242	746	24520	24644	36804	36804					0.18860299875541386
WIPQILGPGLN	11	Unmodified	_WIPQILGPGLN_					0	0	0		ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000426688.1_1_1:81674334-81674790:+|nuORF	MSMS	HCT116MG_D190212_S2	2	403.23260498046875	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.9829	1	2.9425	2.4425	3.4425	-0.040353								0	0	0	0.9619	1	955	955		0.094841	0	1				38243	7818	24521	24645	36805	36805					0.08102266811147274
WISRRRRWNLW	11	Unmodified	_WISRRRRWNLW_					0	0	0			REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF	REV__ENST00000472726.2_1_14:104124030-104124072:+|nuORF	MSMS	HCT116MG_D190212_S3	3	814.9561157226562	2	814.955292	1627.89603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.442	1	36.141	35.641	36.641	-0.30113								0	0	0	0.96208	1	13465	13465		0	0	1		+		38244	15885	24522	24646	36806	36806					0.1071993026207565
WISSGQLY	8	Unmodified	_WISSGQLY_					0	0	0			REV__nc|ENSG00000163995|Q6H8Q1-4|ABLIM2	REV__nc|ENSG00000163995|Q6H8Q1-4|ABLIM2	MULTI-MSMS	HCT116MG_D190212_S2	2	477.2405700683594	2	477.239993	952.465432	0.34496	0.00016463	0.22708	0.00010837	0.57204	0.000273	477.2402228592995	32.043	0.25914	31.813	31.683	31.942	-0.23009					6	4	2	0	0	0	0.64404	1	11873	11873		28.487	0	1	11114000	+		38245	9828	24523	24647	36807	36807					-0.012701905108883693
WISYLPGAL	9	Unmodified	_WISYLPGAL_					0	0	0		ENST00000552983.5_2_12:94072683-94072767:+|nuORF	ENST00000552983.5_2_12:94072683-94072767:+|nuORF	ENST00000552983.5_2_12:94072683-94072767:+|nuORF	MSMS	HCT116MG_D190212_S3	3	510.3102722167969	2	510.28166	1018.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.7	1	55.412	54.912	55.912	-0.28773								0	0	0	0.69272	1	21130	21130		19.439	0	1				38246	8768	24524	24648	36808	36808					0.04023545936956907
WIVSPSGLIK	10	Unmodified	_WIVSPSGLIK_					0	0	0			REV__ENST00000491845.5_2_3:58978268-59035690:-|nuORF	REV__ENST00000491845.5_2_3:58978268-59035690:-|nuORF	MSMS	HCT116MG_D190212_S4	4	367.2228088378906	3	367.221853	1098.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6766	1	7.4351	6.9351	7.9351	-0.24153								0	0	0	0.96453	1	2345	2345		0.62683	0	1		+		38247	12943	24525	24649	36809	36809					0.09835479408138781
WIWCWRREERA	11	Unmodified	_WIWCWRREERA_					0	0	0			REV__ENST00000482384.1_1_1:109756594-109756711:+|nuORF	REV__ENST00000482384.1_1_1:109756594-109756711:+|nuORF	MSMS	HCT116MG_D190212_S2	2	530.6517944335938	3	530.929738	1589.76739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.119	1	47.987	47.487	48.487	-0.13281								0	0	0	0.96111	1	18374	18374		0.50596	0	1		+		38248	15964	24526	24650	36810	36810					-0.00390792763164427
WKAQKIEII	9	Unmodified	_WKAQKIEII_					0	0	0		tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	tr|U7T0W2|U7T0W2_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00698PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	376.8648681640625	3	376.89737	1127.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.661	1	34.503	34.003	35.003	-0.15834								0	0	0	0.71477	1	12903	12903		18.373	1.8072	1				38249	18551	24527	24651	36811	36811					0.11155168299455909
WKGKLHQRRWI	11	Unmodified	_WKGKLHQRRWI_					0	0	0		ENST00000324822.15_1_17:7293318-7293747:-|nuORF	ENST00000324822.15_1_17:7293318-7293747:-|nuORF	ENST00000324822.15_1_17:7293318-7293747:-|nuORF	MSMS	HCT116MG_D190212_S3	3	754.443603515625	2	754.441486	1506.86842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.229	1	47.913	47.413	48.413	-0.31596								0	0	0	0.95954	1	18133	18133		1.3295	0	1				38250	7126	24528	24652	36812	36812					0.1352602700180796
WKGNIEQPTI	10	Unmodified	_WKGNIEQPTI_					0	0	0			REV__nc|ENSG00000072110|P12814-2|ACTN1	REV__nc|ENSG00000072110|P12814-2|ACTN1	MSMS	HCT116MG_D190212_S2	2	395.8805847167969	3	395.880267	1184.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.21	1	29.925	29.425	30.425	-0.28453								0	0	0	0.92499	1	11097	11097		10.315	0.77126	1		+		38251	10770	24529	24653	36813	36813					0.034047995347464166
WKGRILRLK	9	Unmodified	_WKGRILRLK_					0	0	0			REV__ENST00000269919.10_1_19:18474460-18474580:+|nuORF	REV__ENST00000269919.10_1_19:18474460-18474580:+|nuORF	MSMS	HCT116MG_D190212_S1	1	585.3844604492188	2	585.385117	1168.75568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.553	1	62.553	62.053	63.053	0								0	0	0	0.7701	1	24156	24156		0.52476	0	1		+		38252	14692	24530	24654	36814	36814					0.1780537827576154
WKILNKLYP	9	Unmodified	_WKILNKLYP_					0	0	0		ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	MSMS	HCT116MG_D190212_S3	3	392.23895263671875	3	392.237615	1173.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.575	1	24.491	23.991	24.991	-0.083694								0	0	0	0.7694	1	8733	8733		2.9952	0	1				38253	6222	24531	24655	36815	36815					0.11111758679135164
WKKFIFPIL	9	Unmodified	_WKKFIFPIL_					0	0	0			REV__WARS|p.T180K|1|0.49|ENSG00000140105|chr14:100354450-100354450|G/T|missense_variant	REV__WARS|p.T180K|1|0.49|ENSG00000140105|chr14:100354450-100354450|G/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	596.3688354492188	2	596.36807	1190.72159	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.45	1	59.29	58.79	59.79	-0.16012								0	0	0	0.7701	1	22989	22989		0.52476	0	1		+		38254	18050	24532	24656	36816	36816					0.13385537064186792
WKKIQYLS	8	Unmodified	_WKKIQYLS_					0	0	0		ENST00000261332.10_1_18:32920541-32920667:-|nuORF	ENST00000261332.10_1_18:32920541-32920667:-|nuORF	ENST00000261332.10_1_18:32920541-32920667:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	533.777099609375	2	533.30821	1064.60187	0.44598	0.00023784	0.11063	5.8998E-05	0.55661	0.00029684	533.3081564837008	51.464	0.20677	51.282	51.168	51.374	-0.18218					5	3	2	0	0	0	0.66231	1	19763	19763		26.884	5.137	1	8469800			38255	6849	24533	24657	36817	36817					0.07214923719607214
WKKLKKWLI	9	Unmodified	_WKKLKKWLI_					0	0	0			REV__ENSG00000137225|ENST00000398776|CAPN11	REV__ENSG00000137225|ENST00000398776|CAPN11	MSMS	HCT116MG_D190212_S1	1	621.9081420898438	2	621.907894	1241.80123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.572	1	11.572	11.072	12.072	0								0	0	0	0.77025	1	3654	3654		0	0	1		+		38256	12167	24534	24658	36818	36818					0.1900060373816359
WKKRKKPP	8	Unmodified	_WKKRKKPP_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12;REV__nc|ENSG00000060749|Q2KHR3-2|QSER1	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MSMS	HCT116MG_D190212_S3	3	534.3480224609375	2	534.345461	1066.67637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.119	1	37.817	37.317	38.317	-0.30137								0	0	0	0.8837	1	14109	14109		2.8892	0.31174	1		+		38257	11840;10671	24535	24659	36819	36819					0.1456973132164876
WKLKKIIDLF	10	Unmodified	_WKLKKIIDLF_					0	0	0			REV__ENST00000530013.5_1_11:33775932-33796043:-|nuORF	REV__ENST00000530013.5_1_11:33775932-33796043:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	652.4176635742188	2	652.410466	1302.80638	0.61755	0.0004029	2.6881	0.0017537	3.3057	0.0021566	652.4136569153188	60.901	2.6619	60.901	60.052	62.714	0					100	51	3	0	0	0	0.88823	2	23367	23367;24098		1.4819	0.15237	1	36978000	+		38258	16303	24536	24660	36820;36821	36820					0.1670886281010553
WKLKKIIDLF	10	Unmodified	_WKLKKIIDLF_					0	0	0			REV__ENST00000530013.5_1_11:33775932-33796043:-|nuORF	REV__ENST00000530013.5_1_11:33775932-33796043:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	652.1469116210938	2	652.410466	1302.80638	0.61755	0.0004029	2.6881	0.0017537	3.3057	0.0021566	652.4136569153188	60.901	2.6619	60.901	60.052	62.714	0					100	51	3	0	0	0	0.31199	1	24161	24161		0.40072	0	1	36978000	+		38259	16303	24536	24660	36822	36822					0.1670886281010553
WKLSKILKV	9	Unmodified	_WKLSKILKV_					0	0	0			REV__ENST00000287218.8_1_6:38120424-38120514:+|nuORF	REV__ENST00000287218.8_1_6:38120424-38120514:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	372.22265625	3	372.249743	1113.7274	-0.066007	-2.4571E-05	0.032291	1.202E-05	-0.033716	-1.2551E-05	372.24982124037393	36.454	0.15548	36.326	36.226	36.382	-0.12799					4	2	2	0	0	0	0.26745	1	13645	13645		2.4985	1.5362	1	7666800	+		38260	14735	24537	24661	36823	36823					0.17508635575859444
WKMRLRKL	8	Unmodified	_WKMRLRKL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;RALGAPA1|p.N1861Tfs*6|1|0.34|ENSG00000174373|chr14:35595743-35595743|T/-|frameshift_variant	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MSMS	HCT116MG_D190212_S2	2	565.8536987304688	2	565.852596	1129.69064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.811	1	62.682	62.182	63.182	-0.12924								0	0	0	0.8837	1	24350	24350		0.69038	0	1				38261	5327	24538	24662	36824	36824					0.13098060478296247
WKQKLRIWRMK	11	Unmodified	_WKQKLRIWRMK_					0	0	0		ENST00000346991.9_1_15:40939257-40942558:+|nuORF	ENST00000346991.9_1_15:40939257-40942558:+|nuORF	ENST00000346991.9_1_15:40939257-40942558:+|nuORF	MSMS	HCT116MG_D190212_S3	3	524.9798583984375	3	524.981774	1571.92349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4993	1	7.5132	7.0132	8.0132	0.013901								0	0	0	0.96192	1	2262	2262		0.08335	0.08335	1				38262	7265	24539	24663	36825	36825					0.1604069747804715
WKREQERRRRE	11	Unmodified	_WKREQERRRRE_					0	0	0		BRD4|p.R1329W|1|0.47|ENSG00000141867|chr19:15238778-15238778|G/A|missense_variant	BRD4|p.R1329W|1|0.47|ENSG00000141867|chr19:15238778-15238778|G/A|missense_variant	BRD4|p.R1329W|1|0.47|ENSG00000141867|chr19:15238778-15238778|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	543.634521484375	3	543.632861	1627.87675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.817	1	27.817	27.317	28.317	0								0	0	0	0.96138	1	10110	10110		0.36667	0	1				38263	277	24540	24664	36826	36826					0.08792929180458486
WKRLTRSSR	9	Unmodified	_WKRLTRSSR_					0	0	0		ENST00000502692.5_1_11:66313918-66328094:+|nuORF	ENST00000502692.5_1_11:66313918-66328094:+|nuORF	ENST00000502692.5_1_11:66313918-66328094:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	595.34912109375	2	595.349263	1188.68397	0.63501	0.00037806	-0.80664	-0.00048023	-0.17163	-0.00010218	595.3484851832259	52.562	0.41044	52.562	52.331	52.742	0					13	7	3	0	0	0	0.72399	1	20140	20140		3.5965	1.5367	1	19393000			38264	8430	24541	24665	36827	36827					0.09717838851247507
WKRRKMWKRLK	11	Unmodified	_WKRRKMWKRLK_					0	0	0			REV__ENST00000339594.8_1_7:72873876-72873927:-|nuORF	REV__ENST00000339594.8_1_7:72873876-72873927:-|nuORF	MSMS	HCT116MG_D190212_S1	1	808.4959106445312	2	808.495739	1614.97692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.409	1	37.409	36.909	37.909	0								0	0	0	0.96208	1	13976	13976		0	0	1		+		38265	14963	24542	24666	36828	36828					0.1940349498058822
WKRRLRIRIIA	11	Unmodified	_WKRRLRIRIIA_					0	0	0		ENST00000547283.5_1_12:56680283-56694145:-|nuORF	ENST00000547283.5_1_12:56680283-56694145:-|nuORF	ENST00000547283.5_1_12:56680283-56694145:-|nuORF	MSMS	HCT116MG_D190212_S2	2	740.98681640625	2	740.988604	1479.96265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.965	1	40.896	40.396	41.396	-0.069626								0	0	0	0.96149	1	15464	15464		0.30703	0	1				38266	8732	24543	24667	36829	36829					0.24187165823968826
WKRRQQWMLLK	11	Unmodified	_WKRRQQWMLLK_					0	0	0			REV__ENST00000546604.5_1_12:56189840-56194394:-|nuORF	REV__ENST00000546604.5_1_12:56189840-56194394:-|nuORF	MSMS	HCT116MG_D190212_S2	2	786.9508666992188	2	786.95083	1571.88711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.976	1	10.702	10.202	11.202	-0.27365								0	0	0	0.96208	1	3509	3509		0	0	1		+		38267	16403	24544	24668	36830	36830					0.12403820581380387
WKRRRRKEKEK	11	Unmodified	_WKRRRRKEKEK_					0	0	0			REV__PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	REV__PSMD1|p.K849Rfs*44|1|0.38|ENSG00000173692|chr2:231165258-231165258|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	800.26416015625	2	800.486956	1598.95936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.374	1	47.252	46.752	47.752	-0.12175								0	0	0	0.96208	1	18070	18070		0	0	1		+		38268	17447	24545	24669	36831	36831					0.18383870979255335
WKRWKKRFFVL	11	Unmodified	_WKRWKKRFFVL_					0	0	0		nc|ENSG00000163618|Q9ULU8-2|CADPS;nc|ENSG00000163618|Q9ULU8-3|CADPS;CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS	nc|ENSG00000163618|Q9ULU8-2|CADPS;CADPS|p.L1098Vfs*5|1|0.37|ENSG00000163618|chr3:62478299-62478300|-/T|frameshift_variant	nc|ENSG00000163618|Q9ULU8-2|CADPS	MSMS	HCT116MG_D190212_S4	4	531.9915771484375	3	531.989146	1592.94561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.886	1	52.545	52.045	53.045	-0.34023								0	0	0	0.96149	1	19728	19728		0.08335	0	1				38269	9521;314	24546	24670	36832	36832					0.1728524521813597
WKTFSSDL	8	Unmodified	_WKTFSSDL_					0	0	0		ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	492.63458251953125	2	492.245275	982.475997	0.30031	0.00014783	-0.59216	-0.00029149	-0.29184	-0.00014366	492.2447060698956	54.448	0.25563	54.258	54.048	54.303	-0.1894					5	4	2	0	0	0	0.32797	1	20909	20909		7.9102	0	1	9889300			38270	8857	24547	24671	36833	36833					-0.015942078564876283
WKVLDELKVIV	11	Unmodified	_WKVLDELKVIV_					0	0	0			REV__ENSG00000150347|ENST00000279873|ARID5B	REV__ENSG00000150347|ENST00000279873|ARID5B	MSMS	HCT116MG_D190212_S1	1	447.9425964355469	3	447.942868	1340.80677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.184	1	11.184	10.684	11.684	0								0	0	0	0.96208	1	3497	3497		0	0	1		+		38271	12581	24548	24672	36834	36834					0.15000237739286604
WKVSPEEEQKR	11	Unmodified	_WKVSPEEEQKR_					0	0	0		nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF;nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L	nc|ENSG00000166938|Q8TF46-3|DIS3L	nc|ENSG00000166938|Q8TF46-3|DIS3L	MULTI-MSMS	HCT116MG_D190212_S3	3	708.3682861328125	2	708.367515	1414.72048	0.92298	0.00065381	0.49885	0.00035337	1.4218	0.0010072	708.8697348205227	33.002	0.62894	32.717	32.196	32.825	-0.28511					31	20	3	0	0	0	0.7332	1	12020	12020		9.544	0.79857	1	20184000			38272	4891	24549	24673	36835	36835					0.02970626166643342
WKYKCIRWFRW	11	Unmodified	_WKYKCIRWFRW_					0	0	0			REV__ENST00000419746.5_1_2:179403628-179404009:+|nuORF	REV__ENST00000419746.5_1_2:179403628-179404009:+|nuORF	MSMS	HCT116MG_D190212_S1	1	836.2229614257812	2	836.440098	1670.86564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.396	1	47.396	46.896	47.896	0								0	0	0	0.96149	1	18007	18007		0.30703	0.30703	1		+		38273	15512	24550	24674	36836	36836					0.05704435552615905
WKYNRYRYIIT	11	Unmodified	_WKYNRYRYIIT_					0	0	0		TRPM6|p.M1093I|1|0.36|ENSG00000119121|chr9:74776007-74776007|C/A|missense_variant	TRPM6|p.M1093I|1|0.36|ENSG00000119121|chr9:74776007-74776007|C/A|missense_variant	TRPM6|p.M1093I|1|0.36|ENSG00000119121|chr9:74776007-74776007|C/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	788.2764892578125	2	788.425168	1574.83578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.612	1	34.612	34.112	35.112	0								0	0	0	0.95686	1	12848	12848		2.7352	1.4057	1				38274	18667	24551	24675	36837	36837					0.07135775088318042
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;CKAP5|p.V1971Lfs*42|1|0.03|ENSG00000175216|chr11:46744211-46744212|-/TTGAAAAAAAG|frameshift_variant;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.K1126Rfs*25|1|0.46|ENSG00000175216|chr11:46767609-46767609|T/-|frameshift_variant	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	HCT116MG_D190212_S2	2	535.81640625	2	535.815867	1069.61718	0.45888	0.00024587	0.36006	0.00019293	0.81894	0.0004388	535.8160378848937	54.293	0.30832	54.103	53.893	54.201	-0.1894					12	5	4	0	0	0	0.082877	1	20916	20916		61.602	9.9721	1	24511000			38275	469	24552	24676	36838	36838					0.08515790516798916
WLAKILMS	8	Unmodified	_WLAKILMS_					0	0	0			REV__USP34|p.N788Yfs*3|1|0.09|ENSG00000115464|chr2:61343952-61343953|TT/-|frameshift_variant	REV__USP34|p.N788Yfs*3|1|0.09|ENSG00000115464|chr2:61343952-61343953|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	481.26434326171875	2	481.280606	960.546659	0.29221	0.00014063	0.81746	0.00039343	1.1097	0.00053406	481.28046253670357	45.561	0.98916	45.188	44.613	45.602	-0.37266					30	19	3	0	0	0	0.8506	1	16946	16946		5.2307	0	1	5742400	+		38276	11547	24553	24677	36839	36839					0.06480793927494233
WLALILNRL	9	Unmodified	_WLALILNRL_					0	0	0			REV__KDM1B|p.E545Gfs*8|1|0.11|ENSG00000165097|chr6:18217825-18217826|-/G|frameshift_variant	REV__KDM1B|p.E545Gfs*8|1|0.11|ENSG00000165097|chr6:18217825-18217826|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	371.2541198730469	3	371.237726	1110.69135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.571	1	48.204	47.704	48.704	-0.36728								0	0	0	0.77018	1	17993	17993		0.26902	0	1		+		38277	13031	24554	24678	36840	36840					0.14043178398969758
WLCRCAGP	8	Unmodified	_WLCRCAGP_					0	0	0			REV__ENST00000511885.6_1_4:2230963-2243443:-|nuORF	REV__ENST00000511885.6_1_4:2230963-2243443:-|nuORF	MSMS	HCT116MG_D190212_S2	2	453.20965576171875	2	453.209658	904.404763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.014	1	32.802	32.302	33.302	-0.21135								0	0	0	0.8837	1	12235	12235		11.114	0.93107	1		+		38278	16152	24555	24679	36841	36841					-0.05126322366493241
WLDLPIKLAER	11	Unmodified	_WLDLPIKLAER_					0	0	0			REV__ZZZ3|p.N537Ifs*57|1|0.16|ENSG00000036549|chr1:77584551-77584551|T/-|frameshift_variant	REV__ZZZ3|p.N537Ifs*57|1|0.16|ENSG00000036549|chr1:77584551-77584551|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	451.9324035644531	3	451.934484	1352.78162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.204	1	51.204	50.704	51.704	0								0	0	0	0.95686	1	19557	19557		1.1098	0	1		+		38279	18098	24556	24680	36842	36842					0.1193418293673858
WLEAPSLSP	9	Unmodified	_WLEAPSLSP_					0	0	0			REV__ENSG00000162396|ENST00000371279|PARS2	REV__ENSG00000162396|ENST00000371279|PARS2	MSMS	HCT116MG_D190212_S4	4	500.2611083984375	2	500.260925	998.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.429	1	36.043	35.543	36.543	-0.38558								0	0	0	0.42657	1	13331	13331		32.305	0	1		+		38280	12875	24557	24681	36843	36843					0.007983651776157785
WLEENVHEV	9	Unmodified	_WLEENVHEV_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	HCT116MG_D190212_S1	1	577.7774658203125	2	577.77747	1153.54039	0.21659	0.00012514	0.16333	9.4371E-05	0.37992	0.00021951	577.7775927835421	40.217	0.20742	40.217	40.124	40.332	0					6	3	2	0	0	0	0.061422	1	15131	15131		69.105	31.131	1	8610500			38281	3700	24558	24682	36844	36844					-0.03024052770342678
WLEENVHEV	9	Unmodified	_WLEENVHEV_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	HCT116MG_D190212_S2	2	577.7769775390625	2	577.77747	1153.54039	0.48913	0.00028261	0.059519	3.4389E-05	0.54864	0.00031699	577.7772542117351	40.253	0.31172	40.18	40.05	40.361	-0.072838					11	5	3	0	0	0	0.034046	1	15190	15190		82.529	44.555	1	56981000			38282	3700	24558	24682	36845	36845					-0.03024052770342678
WLGPWVQRSS	10	Unmodified	_WLGPWVQRSS_					0	0	0			REV__ENST00000521192.2_1_8:37605106-37605247:-|nuORF	REV__ENST00000521192.2_1_8:37605106-37605247:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	608.0491943359375	2	608.317097	1214.61964	0.35876	0.00021824	-1.1503	-0.00069974	-0.79153	-0.0004815	608.3162037505173	49.895	0.25732	49.895	49.802	50.059	0					6	4	2	0	0	0	0.31042	1	19037	19037		6.2058	2.6093	1	8295600	+		38283	16236	24559	24683	36846	36846					0.020916389744797925
WLHHLFQM	8	Unmodified	_WLHHLFQM_					0	0	0			REV__ENST00000367467.7_1_6:148869745-148869889:+|nuORF	REV__ENST00000367467.7_1_6:148869745-148869889:+|nuORF	MSMS	HCT116MG_D190212_S1	1	556.2813110351562	2	556.278929	1110.54331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.299	1	48.299	47.799	48.799	0								0	0	0	0.8837	1	18374	18374		2.5775	0.27475	1		+		38284	15121	24560	24684	36847	36847					-0.007544561265149241
WLHRHGRNV	9	Unmodified	_WLHRHGRNV_					0	0	0		ENST00000524717.5_1_11:96075436-96075634:-|nuORF	ENST00000524717.5_1_11:96075436-96075634:-|nuORF	ENST00000524717.5_1_11:96075436-96075634:-|nuORF	MSMS	HCT116MG_D190212_S3	3	587.8209838867188	2	587.820673	1173.62679	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.287	1	12.349	11.849	12.849	0.06246								0	0	0	0.77025	1	3821	3821		0	0	1				38285	8577	24561	24685	36848	36848					0.04692416365560348
WLKAFYKLRKR	11	Unmodified	_WLKAFYKLRKR_					0	0	0			REV__ENSG00000113318|ENST00000265081|MSH3	REV__ENSG00000113318|ENST00000265081|MSH3	MSMS	HCT116MG_D190212_S1	1	754.9656372070312	2	754.964263	1507.91397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.161	1	62.161	61.661	62.661	0								0	0	0	0.96141	1	23998	23998		0.35063	0	1		+		38286	11480	24562	24686	36849	36849					0.18033252464192628
WLKWWRML	8	Unmodified	_WLKWWRML_					0	0	0			REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF	REV__ENST00000330333.10_1_21:42615402-42617988:+|nuORF	MSMS	HCT116MG_D190212_S1	1	406.891845703125	3	406.891673	1217.65319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.82	1	11.82	11.32	12.32	0								0	0	0	0.8837	1	3753	3753		0	0	1		+		38287	14925	24563	24687	36850	36850					0.05306969212688273
WLLALAWPPQ	10	Unmodified	_WLLALAWPPQ_					0	0	0		LRIT1|p.P59Rfs*109|1|0.15|ENSG00000148602|chr10:84237633-84237633|G/-|frameshift_variant;ENSG00000148602|ENST00000372105|LRIT1	LRIT1|p.P59Rfs*109|1|0.15|ENSG00000148602|chr10:84237633-84237633|G/-|frameshift_variant	LRIT1|p.P59Rfs*109|1|0.15|ENSG00000148602|chr10:84237633-84237633|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	597.8390502929688	2	597.837134	1193.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.458	1	42.154	41.654	42.654	-0.30352								0	0	0	0.92607	1	15817	15817		10.074	0.6908	1				38288	9302	24564	24688	36851	36851					0.07063185645051817
WLLALCLV	8	Unmodified	_WLLALCLV_					0	0	0		ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	MULTI-MSMS	HCT116MG_D190212_S4	4	465.778076171875	2	465.777699	929.540846	-0.048696	-2.2681E-05	0.18286	8.5172E-05	0.13416	6.2491E-05	465.7776630313255	44.397	1.2723	44.023	43.077	44.349	-0.37373					47	27	3	0	0	0	0.87576	1	16071	16071		0.79363	0	1	11288000			38289	5109	24565	24689	36852	36852					0.07325695415818245
WLLLLLLLLLL	11	Unmodified	_WLLLLLLLLLL_					0	0	0			REV__ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant	REV__ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	668.4732666015625	2	668.472535	1334.93052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.992	1	25.992	25.492	26.492	0								0	0	0	0.96208	1	9373	9373		0	0	1		+		38290	9852	24566	24690	36853	36853					0.27644940577624766
WLLLLLLLLLL	11	Unmodified	_WLLLLLLLLLL_					0	0	0			REV__ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant	REV__ADAM33|p.A455Pfs*14|1|0.31|ENSG00000149451|chr20:3672575-3672575|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	668.412841796875	2	668.472535	1334.93052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.841	1	47.708	47.208	48.208	-0.13281								0	0	0	0.96208	1	18260	18260		0	0	1		+		38291	9852	24566	24690	36854	36854					0.27644940577624766
WLLLRLPCI	9	Unmodified	_WLLLRLPCI_					0	0	0		ELP5|p.T120I|1|0.44|ENSG00000170291|chr17:7254705-7254705|C/T|missense_variant	ELP5|p.T120I|1|0.44|ENSG00000170291|chr17:7254705-7254705|C/T|missense_variant	ELP5|p.T120I|1|0.44|ENSG00000170291|chr17:7254705-7254705|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	376.2327880859375	3	376.231695	1125.67326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.584	1	54.289	53.789	54.789	-0.29587								0	0	0	0.7696	1	20686	20686		1.1933	0	1				38292	773	24567	24691	36855	36855					0.11544720152619448
WLLWFWWLEYY	11	Unmodified	_WLLWFWWLEYY_					0	0	0			REV__ENST00000473467.5_1_2:74685729-74687181:+|nuORF	REV__ENST00000473467.5_1_2:74685729-74687181:+|nuORF	MSMS	HCT116MG_D190212_S1	1	852.9177856445312	2	852.916113	1703.81767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.67	1	45.67	45.17	46.17	0								0	0	0	0.96141	1	17309	17309		0.35063	0.35063	1		+		38293	14345	24568	24692	36856	36856					-0.006083598863824591
WLLWPLWP	8	Unmodified	_WLLWPLWP_					0	0	0			REV__ENSG00000256043|ENST00000433477|CTSO	REV__ENSG00000256043|ENST00000433477|CTSO	MSMS	HCT116MG_D190212_S1	1	370.8759460449219	3	370.876018	1109.60622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.471	1	11.471	10.971	11.971	0								0	0	0	0.8837	1	3613	3613		0	0	1		+		38294	14399	24569	24693	36857	36857					0.055804329331749614
WLLWPLWP	8	Unmodified	_WLLWPLWP_					0	0	0			REV__ENSG00000256043|ENST00000433477|CTSO	REV__ENSG00000256043|ENST00000433477|CTSO	MSMS	HCT116MG_D190212_S1	1	370.8819885253906	3	370.876018	1109.60622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.876	1	11.876	11.376	12.376	0								0	0	0	0.8837	1	3776	3776		0	0	1		+		38295	14399	24569	24693	36858	36858					0.055804329331749614
WLMAFEGSV	9	Unmodified	_WLMAFEGSV_					0	0	0			REV__ALAD|p.H287Y|1|0.39|ENSG00000148218|chr9:113389049-113389049|G/A|missense_variant	REV__ALAD|p.H287Y|1|0.39|ENSG00000148218|chr9:113389049-113389049|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	520.2510986328125	2	520.249503	1038.48445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.653	1	28.317	27.817	28.817	-0.33564								0	0	0	0.76781	1	10313	10313		8.5933	0.68312	1		+		38296	9910	24570	24694	36859	36859					-0.03324977211514124
WLMMKRGLYS	10	Unmodified	_WLMMKRGLYS_					0	0	0		ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	MSMS	HCT116MG_D190212_S2	2	428.89129638671875	3	428.891233	1283.65187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.33548	1	0.33154	-0.16846	0.83154	-0.0039395								0	0	0	0.97116	1	119	119		0	0	1				38297	6820	24571	24695	36860	36860					0.021389670616372314
WLMMKRGLYS	10	Unmodified	_WLMMKRGLYS_					0	0	0		ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.891233	1283.65187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.51731	1	0.25275	-0.24725	0.75275	-0.26456								0	0	0	0.97116	1	161	161		0	0	1				38298	6820	24571	24695	36861	36861					0.021389670616372314
WLMMKRGLYS	10	Unmodified	_WLMMKRGLYS_					0	0	0		ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.891233	1283.65187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0537	1	2.7892	2.2892	3.2892	-0.26456								0	0	0	0.97116	1	934	934		0	0	1				38299	6820	24571	24695	36862	36862					0.021389670616372314
WLMMKRGLYS	10	Unmodified	_WLMMKRGLYS_					0	0	0		ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.891233	1283.65187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.0665	1	3.8019	3.3019	4.3019	-0.26456								0	0	0	0.97116	1	1238	1238		0	0	1				38300	6820	24571	24695	36863	36863					0.021389670616372314
WLMMKRGLYS	10	Unmodified	_WLMMKRGLYS_					0	0	0		ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	ENST00000256383.8_1_14:67826941-67827073:+|nuORF	MSMS	HCT116MG_D190212_S4	4	429.08868408203125	3	428.891233	1283.65187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.671	1	10.482	9.9817	10.982	-0.18973								0	0	0	0.97116	1	3274	3274		0	0	1				38301	6820	24571	24695	36864	36864					0.021389670616372314
WLPYKLRLT	9	Unmodified	_WLPYKLRLT_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MSMS	HCT116MG_D190212_S4	4	397.24224853515625	3	397.241248	1188.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.73	1	49.368	48.868	49.868	-0.36213								0	0	0	0.76991	1	18456	18456		1.1933	0.12188	1		+		38302	11257	24572	24696	36865	36865					0.11511161053385877
WLQPVRSVLY	10	Unmodified	_WLQPVRSVLY_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MSMS	HCT116MG_D190212_S1	1	630.8594970703125	2	630.858598	1259.70264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.078	1	50.078	49.578	50.578	0								0	0	0	0.94107	1	19099	19099		6.7232	1.4263	1		+		38303	15969	24573	24697	36866	36866					0.08317955702477775
WLRCRMGVP	9	Unmodified	_WLRCRMGVP_					0	0	0		ENST00000544485.1_2_12:121712348-121734925:-|nuORF;ENST00000543477.1_2_12:121712348-121735260:-|nuORF	ENST00000544485.1_2_12:121712348-121734925:-|nuORF	ENST00000544485.1_2_12:121712348-121734925:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	559.2911376953125	2	559.291514	1116.56847	0.33245	0.00018593	-0.52037	-0.00029104	-0.18792	-0.0001051	559.2910454692333	27.257	0.4676	26.946	26.742	27.21	-0.3114					13	8	2	0	0	0	0.57626	1	9766	9766		12.532	0.89125	1	2675900			38304	8704	24574	24698	36867	36867					0.014852754044341054
WLRCRMGVP	9	Unmodified	_WLRCRMGVP_					0	0	0		ENST00000544485.1_2_12:121712348-121734925:-|nuORF;ENST00000543477.1_2_12:121712348-121735260:-|nuORF	ENST00000544485.1_2_12:121712348-121734925:-|nuORF	ENST00000544485.1_2_12:121712348-121734925:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	559.291514	1116.56847	0.41651	0.00023295	-0.85978	-0.00048087	-0.44327	-0.00024792	559.2909830890698	27.195	0.3125	27.026	26.807	27.12	-0.16933	0.040013	-0.00034116	NaN	12.532	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4577000			38305	8704	24574	24698							0.014852754044341054
WLRCRMGVP	9	Unmodified	_WLRCRMGVP_					0	0	0		ENST00000544485.1_2_12:121712348-121734925:-|nuORF;ENST00000543477.1_2_12:121712348-121735260:-|nuORF	ENST00000544485.1_2_12:121712348-121734925:-|nuORF	ENST00000544485.1_2_12:121712348-121734925:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	559.291514	1116.56847	0.33245	0.00018593	-0.52037	-0.00029104	-0.18792	-0.0001051	559.2910454692333	27.257	0.4676	26.946	26.742	27.21	-0.3114	-0.040013	3.8504E-05	NaN	12.532	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2675900			38306	8704	24574	24698							0.014852754044341054
WLRHDRRRWRH	11	Unmodified	_WLRHDRRRWRH_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MSMS	HCT116MG_D190212_S2	2	837.4575805664062	2	837.459065	1672.90358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.808	1	23.425	22.925	23.925	-0.38324								0	0	0	0.96208	1	8503	8503		0	0	1				38307	5316	24575	24699	36868	36868					0.09404082582341289
WLRLLHATLLC	11	Unmodified	_WLRLLHATLLC_					0	0	0			REV__CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant	REV__CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	447.0993957519531	3	446.928676	1337.7642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.1494	1	2.1494	1.6494	2.6494	0								0	0	0	0.96208	1	644	644		0	0	1		+		38308	10167	24576	24700	36869	36869					0.10882564130133687
WLRLLHATLLC	11	Unmodified	_WLRLLHATLLC_					0	0	0			REV__CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant	REV__CFAP69|p.K687Nfs*43|3|0.26|ENSG00000105792|chr7:90303973-90303973|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	447.3468322753906	3	446.928676	1337.7642	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.17337	1	0.23427	-0.26573	0.73427	0.060905								0	0	0	0.96208	1	68	68		0	0	1		+		38309	10167	24576	24700	36870	36870					0.10882564130133687
WLRLTIKGRIM	11	Unmodified	_WLRLTIKGRIM_					0	0	0		ENST00000432729.5_1_3:178745252-178745533:-|nuORF	ENST00000432729.5_1_3:178745252-178745533:-|nuORF	ENST00000432729.5_1_3:178745252-178745533:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	694.4221801757812	2	693.923749	1385.83295	0.65212	0.00045252	-2.9324	-0.0020348	-2.2802	-0.0015823	694.4213897864507	55.222	1.1278	55.034	54.765	55.893	-0.18797					40	21	3	0	0	0	0.74191	1	21278	21278		2.9952	0.26005	1	26347000			38310	7863	24577	24701	36871	36871					0.15546228429798248
WLRPAVTYKL	10	Unmodified	_WLRPAVTYKL_					0	0	0		ENST00000505803.5_1_5:110848152-110848242:-|nuORF	ENST00000505803.5_1_5:110848152-110848242:-|nuORF	ENST00000505803.5_1_5:110848152-110848242:-|nuORF	MSMS	HCT116MG_D190212_S4	4	623.8698120117188	2	623.868966	1245.72338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.35	1	42.976	42.476	43.476	-0.37433								0	0	0	0.96337	1	15933	15933		1.4819	0	1				38311	8454	24578	24702	36872	36872					0.11034546082123597
WLRRRRRAKPR	11	Unmodified	_WLRRRRRAKPR_					0	0	0			REV__ENST00000606621.1_1_6:85472779-85472989:-|nuORF	REV__ENST00000606621.1_1_6:85472779-85472989:-|nuORF	MSMS	HCT116MG_D190212_S1	1	775.987060546875	2	775.990001	1549.96545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.664	1	51.664	51.164	52.164	0								0	0	0	0.95636	1	19745	19745		2.9952	2.6882	1		+		38312	16772	24579	24703	36873	36873					0.2124643400147761
WLRRRYLRLRY	11	Unmodified	_WLRRRYLRLRY_					0	0	0		ENSG00000147119|ENST00000276055|CHST7	ENSG00000147119|ENST00000276055|CHST7	ENSG00000147119|ENST00000276055|CHST7	MSMS	HCT116MG_D190212_S3	3	551.0669555664062	3	550.998704	1649.97428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.533	1	40.232	39.732	40.732	-0.30161								0	0	0	0.9619	1	15051	15051		0.094841	0.094841	1				38313	3972	24580	24704	36874	36874					0.1752936284729003
WLRWFLWRLLW	11	Unmodified	_WLRWFLWRLLW_					0	0	0		ENST00000264649.10_1_17:40610912-40612943:+|nuORF	ENST00000264649.10_1_17:40610912-40612943:+|nuORF	ENST00000264649.10_1_17:40610912-40612943:+|nuORF	MSMS	HCT116MG_D190212_S1	1	558.9880981445312	3	558.985513	1673.93471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.3	1	12.3	11.8	12.8	0								0	0	0	0.96208	1	3939	3939		0	0	1				38314	6895	24581	24705	36875	36875					0.12469842843870538
WLRWFLWRLLW	11	Unmodified	_WLRWFLWRLLW_					0	0	0		ENST00000264649.10_1_17:40610912-40612943:+|nuORF	ENST00000264649.10_1_17:40610912-40612943:+|nuORF	ENST00000264649.10_1_17:40610912-40612943:+|nuORF	MSMS	HCT116MG_D190212_S1	1	558.987060546875	3	558.985513	1673.93471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.491	1	42.491	41.991	42.991	0								0	0	0	0.96208	1	16028	16028		0	0	1				38315	6895	24581	24705	36876	36876					0.12469842843870538
WLRYQGCQWRR	11	Unmodified	_WLRYQGCQWRR_					0	0	0		SLC38A7|p.V357Cfs*38|1|0.24|ENSG00000103042|chr16:58671207-58671207|C/-|frameshift_variant	SLC38A7|p.V357Cfs*38|1|0.24|ENSG00000103042|chr16:58671207-58671207|C/-|frameshift_variant	SLC38A7|p.V357Cfs*38|1|0.24|ENSG00000103042|chr16:58671207-58671207|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	517.9298095703125	3	517.92985	1550.76772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.864	1	51.68	51.18	52.18	-0.18369								0	0	0	0.95954	1	19910	19910		1.3296	0.82369	1				38316	18162	24582	24706	36877	36877					0.014366269566380652
WLTCLLRRERI	11	Unmodified	_WLTCLLRRERI_					0	0	0		ZNF823|p.H545R|1|0.17|ENSG00000197933|chr19:11721900-11721900|T/C|missense_variant	ZNF823|p.H545R|1|0.17|ENSG00000197933|chr19:11721900-11721900|T/C|missense_variant	ZNF823|p.H545R|1|0.17|ENSG00000197933|chr19:11721900-11721900|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	729.9244384765625	2	729.921738	1457.82892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.92	1	14.92	14.42	15.42	0								0	0	0	0.95954	1	4920	4920		1.3295	0.25807	1				38317	18738	24583	24707	36878	36878					0.11832138936119918
WLVSLIFTL	9	Unmodified	_WLVSLIFTL_					0	0	0			REV__MBOAT1|p.A378V|1|0.29|ENSG00000172197|chr6:20112952-20112952|G/A|missense_variant	REV__MBOAT1|p.A378V|1|0.29|ENSG00000172197|chr6:20112952-20112952|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	546.326904296875	2	546.328611	1090.64267	0.54671	0.00029868	-3.3228	-0.0018153	-2.7761	-0.0015167	546.3265998653824	57.204	0.51925	57.025	56.844	57.363	-0.17904					14	9	3	0	0	0	0.43775	1	22106	22106		20.454	1.0917	1	63165000	+		38318	17009	24584	24708	36879	36879					0.10097265039257763
WLWHCSQRTY	10	Unmodified	_WLWHCSQRTY_					0	0	0		ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	ENST00000577083.1_1_16:4491378-4492529:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	690.3190307617188	2	690.319314	1378.62407	0.75536	0.00052144	0.17512	0.00012089	0.93048	0.00064233	690.3190746598387	26.633	0.2602	26.633	26.501	26.761	0					8	4	3	0	0	0	0.78781	1	9660	9660		13.042	0.80181	1	3917600			38319	8930	24585	24709	36880	36880					-0.05009219874273185
WLWRRCLARLL	11	Unmodified	_WLWRRCLARLL_					0	0	0		FUT5|p.G19R|1|0.39|ENSG00000130383|chr19:5867671-5867671|C/T|missense_variant	FUT5|p.G19R|1|0.39|ENSG00000130383|chr19:5867671-5867671|C/T|missense_variant	FUT5|p.G19R|1|0.39|ENSG00000130383|chr19:5867671-5867671|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	743.4360961914062	2	743.434815	1484.85508	0.90441	0.00067237	-0.22005	-0.0001636	0.68436	0.00050878	743.4346798645591	53.091	0.66867	53.091	52.742	53.411	0					27	12	3	0	0	0	0.74191	1	20408	20408		0.30703	0.03801	1	34843000			38320	9171	24586	24710	36881	36881					0.13204452898253294
WLWRRCLARLL	11	Unmodified	_WLWRRCLARLL_					0	0	0		FUT5|p.G19R|1|0.39|ENSG00000130383|chr19:5867671-5867671|C/T|missense_variant	FUT5|p.G19R|1|0.39|ENSG00000130383|chr19:5867671-5867671|C/T|missense_variant	FUT5|p.G19R|1|0.39|ENSG00000130383|chr19:5867671-5867671|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	743.434815	1484.85508	0.90441	0.00067237	-0.22005	-0.0001636	0.68436	0.00050878	743.4346798645591	53.091	0.66867	53.091	52.742	53.411	0	0	0	NaN	0.30703	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34843000			38321	9171	24586	24710							0.13204452898253294
WLWRRGRTRWS	11	Unmodified	_WLWRRGRTRWS_					0	0	0			REV__ENST00000379565.7_1_X:20227482-20284914:-|nuORF	REV__ENST00000379565.7_1_X:20227482-20284914:-|nuORF	MSMS	HCT116MG_D190212_S2	2	780.7197265625	2	780.426368	1558.83818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.802	1	40.733	40.233	41.233	-0.069626								0	0	0	0.95636	1	15398	15398		2.9952	0.26005	1		+		38322	15260	24587	24711	36882	36882					0.08111668336619005
WLWSVFHRLRW	11	Unmodified	_WLWSVFHRLRW_					0	0	0			REV__ENST00000451837.5_1_22:24056493-24059477:-|nuORF	REV__ENST00000451837.5_1_22:24056493-24059477:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	793.431640625	2	793.430587	1584.84662	0.96269	0.00076383	0.062163	4.9322E-05	1.0248	0.00081315	793.4306707361669	22.199	0.36406	21.814	21.583	21.947	-0.38519					23	6	5	0	0	0	0.74191	1	7829	7829		0.26902	0.26902	1	151930000	+		38323	15715	24588	24712	36883	36883					0.07759222253253029
WLWWLWWHLHV	11	Unmodified	_WLWWLWWHLHV_					0	0	0			REV__ENST00000361229.8_1_X:101976007-102003782:+|nuORF	REV__ENST00000361229.8_1_X:101976007-102003782:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	553.829833984375	3	554.622463	1660.84556	0.63531	0.00035236	3.5604	0.0019747	4.1958	0.0023271	554.6256672934446	47.92	0.15413	47.787	47.687	47.841	-0.13282					4	2	2	0	0	0	0.36631	1	18300	18300		0.094841	0.094841	1	9399800	+		38324	15091	24589	24713	36884	36884					0.04157007884327868
WLWWQPWWWKL	11	Unmodified	_WLWWQPWWWKL_					0	0	0		chr12:54282820-54283827|481|25.33|0.0|21.27|+|1|HNRNPA1,HNRNPA1|1	chr12:54282820-54283827|481|25.33|0.0|21.27|+|1|HNRNPA1,HNRNPA1|1	chr12:54282820-54283827|481|25.33|0.0|21.27|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S3	3	857.9384155273438	2	857.937714	1713.86087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.141	1	38.839	38.339	39.339	-0.30137								0	0	0	0.96208	1	14523	14523		0	0	1				38325	442	24590	24714	36885	36885					0.032498746815463164
WLYLEPVFH	9	Unmodified	_WLYLEPVFH_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	HCT116MG_D190212_S4	4	402.2113952636719	3	401.878087	1202.61243	0.14977	6.019E-05	-3.5545	-0.0014285	-3.4047	-0.0013683	402.21158090154864	23.909	0.26003	23.651	23.521	23.781	-0.25816					5	4	2	0	0	0	0.74258	1	8436	8436		1.1933	0	1	1503900			38326	5848	24591	24715	36886	36886					0.01922906374034028
WLYLEPVFH	9	Unmodified	_WLYLEPVFH_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;DNAH14|p.T2021Hfs*9|1|0.38|ENSG00000185842|chr1:225289906-225289906|A/-|frameshift_variant;DNAH14|p.I2559Nfs*2|1|0.39|ENSG00000185842|chr1:225337448-225337449|-/A|frameshift_variant	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MATCH	HCT116MG_D190212_S2	2		3	401.878087	1202.61243	0.18842	7.5722E-05	-4.0995	-0.0016475	-3.911	-0.0015718	401.876180753129	24.136	0.15554	23.756	23.666	23.822	-0.38003	0.052179	-0.00042814	NaN	1.1933	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4455600			38327	5848	24591	24715							0.01922906374034028
WMAPRCWRM	9	Unmodified	_WMAPRCWRM_					0	0	0		ENST00000371984.7_1_1:46661586-46662425:-|nuORF	ENST00000371984.7_1_1:46661586-46662425:-|nuORF	ENST00000371984.7_1_1:46661586-46662425:-|nuORF	MSMS	HCT116MG_D190212_S2	2	618.7830200195312	2	618.782998	1235.55144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6324	1	2.5921	2.0921	3.0921	-0.040353								0	0	0	0.77025	1	842	842		0	0	1				38328	7449	24592	24716	36887	36887					-0.05690968473072644
WMCNKFRC	8	Unmodified	_WMCNKFRC_					0	0	0		ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant;ENST00000470930.5_1_6:131962606-131979536:+|nuORF;ENST00000427707.5_1_6:131962606-131995523:+|nuORF;ENPP3|p.N789Tfs*54|1|0.21|ENSG00000154269|chr6:131740285-131740285|A/-|frameshift_variant;ENPP3|p.T866Sfs*8|1|0.12|ENSG00000154269|chr6:131746924-131746925|-/GCTT|frameshift_variant;ENSG00000154269|ENST00000357639|ENPP3	ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant	ENPP3|p.N279Mfs*25|1|0.31|ENSG00000154269|chr6:131675151-131675151|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	363.11163330078125	3	363.159325	1086.45615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.422	1	64.422	63.922	64.922	0								0	0	0	0.8837	1	24849	24849		0	0	1				38329	783	24593	24717	36888	36888					-0.08362321664094452
WMFDWEMESGD	11	Unmodified	_WMFDWEMESGD_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MSMS	HCT116MG_D190212_S1	1	478.1780700683594	3	478.177656	1431.51114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.5453	1	6.5453	6.0453	7.0453	0								0	0	0	0.9619	1	1972	1972		0.094841	0	1		+		38330	12482	24594	24718	36889	36889					-0.18735701173159214
WMFGSCCH	8	Unmodified	_WMFGSCCH_					0	0	0		ENST00000569748.5_2_16:71841975-71842765:-|nuORF	ENST00000569748.5_2_16:71841975-71842765:-|nuORF	ENST00000569748.5_2_16:71841975-71842765:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	970.3387451171875	1	970.336826	969.329549	0.77771	0.00075464	1.1527	0.0011185	1.9304	0.0018732	970.3377120577472	24.318	0.15713	24.318	24.202	24.36	0					4	2	2	0	0	0	0.86564	1	8714	8714		2.5775	0	1	7469700			38331	8882	24595	24719	36890	36890					-0.15634247889215658
WMIYVSEGFR	10	Unmodified	_WMIYVSEGFR_					0	0	0		ENST00000582580.1_1_17:10555622-10555847:-|nuORF	ENST00000582580.1_1_17:10555622-10555847:-|nuORF	ENST00000582580.1_1_17:10555622-10555847:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	644.8147583007812	2	644.313166	1286.61178	0.36306	0.00023392	0.13989	9.0132E-05	0.50294	0.00032405	644.8145037860904	49.699	0.1644	49.337	49.269	49.434	-0.36213					5	3	2	0	0	0	0.60826	1	18468	18468		27.629	1.3607	1	7812000			38332	8960	24596	24720	36891	36891					-0.02006256337335799
WMNQRQRK	8	Unmodified	_WMNQRQRK_					0	0	0		ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	MSMS	HCT116MG_D190212_S2	2	382.8705749511719	3	382.86982	1145.58763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.69838	1	0.69212	0.19212	1.1921	-0.00626								0	0	0	0.8837	1	234	234		0.40072	0	1				38333	3615	24597	24721	36892	36892					0.02065948019685493
WMPRCTWAM	9	Unmodified	_WMPRCTWAM_					0	0	0		TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	591.7590942382812	2	591.256282	1180.49801	0.70142	0.00041472	1.1012	0.00065108	1.8026	0.0010658	591.7585429428059	19.238	0.67583	19.051	18.557	19.233	-0.18674					15	12	2	0	0	0	0.37539	1	6504	6504		24.021	0.23079	1	2767900			38334	18266	24598	24722	36893	36893					-0.08501765975574926
WMPRCTWAM	9	Unmodified	_WMPRCTWAM_					0	0	0		TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	591.256282	1180.49801	0.53912	0.00031876	1.602	0.00094719	2.1411	0.0012659	591.2568927198064	19.042	0.31184	19.111	18.927	19.239	0.069159	0.029929	0.00038457	NaN	24.021	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2582400			38335	18266	24598	24722							-0.08501765975574926
WMPRCTWAM	9	Unmodified	_WMPRCTWAM_					0	0	0		TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	TF|p.R327Gfs*35|2|0.17|ENSG00000091513|chr3:133757870-133757870|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	591.256282	1180.49801	0.70142	0.00041472	1.1012	0.00065108	1.8026	0.0010658	591.7585429428059	19.238	0.67583	19.051	18.557	19.233	-0.18674	-0.029929	-0.00020764	NaN	24.021	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2767900			38336	18266	24598	24722							-0.08501765975574926
WMRRMRILR	9	Unmodified	_WMRRMRILR_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	ENSG00000108298|ENST00000225430|RPL19;RPL19|p.L105Q|1|0.28|ENSG00000108298|chr17:39203067-39203067|T/A|missense_variant	ENSG00000108298|ENST00000225430|RPL19	MSMS	HCT116MG_D190212_S1	1	439.9217224121094	3	439.921749	1316.74342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.48	1	11.48	10.98	11.98	0								0	0	0	0.77025	1	3617	3617		0	0	1				38337	2153;18125	24599	24723	36894	36894					0.0977169526945545
WMYVTWFFWFW	11	Unmodified	_WMYVTWFFWFW_					0	0	0		ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-SECPEP	HCT116MG_D190212_S3	3	850.3853149414062	2	849.883758	1697.75296	0.86542	0.00073551	-1.9421	-0.0016505	-1.0767	-0.00091504	849.8814279679443	29.645	0.26085	29.409	29.239	29.5	-0.23655					8	4	3	0	0	0	0.36627	1	10801	10801		0.35063	0.043601	1	5392600			38338	5916	24600	24724	36895	36895					-0.06800257964073353
WNDEGWSDP	9	Unmodified	_WNDEGWSDP_					0	0	0			REV__nc|ENSG00000142186|Q96KG9-3|SCYL1	REV__nc|ENSG00000142186|Q96KG9-3|SCYL1	MSMS	HCT116MG_D190212_S3	3	369.1458435058594	3	369.145561	1104.41485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.818	1	22.799	22.299	23.299	-0.018869								0	0	0	0.76967	1	8025	8025		1.0715	0	1		+		38339	12348	24601	24725	36896	36896					-0.13317764626549433
WNELTQFDRP	10	Unmodified	_WNELTQFDRP_					0	0	0			REV__nc|ENSG00000239264|Q8NBS9-2|TXNDC5	REV__nc|ENSG00000239264|Q8NBS9-2|TXNDC5	MULTI-MSMS	HCT116MG_D190212_S2	2	653.3155517578125	2	653.314751	1304.61495	0.58214	0.00038032	0.54053	0.00035314	1.1227	0.00073346	653.3151523577174	16.724	0.41657	16.383	16.1	16.516	-0.34183					18	7	4	0	0	0	0.76143	1	5632	5632		15.248	0	1	8451600	+		38340	14343	24602	24726	36897	36897					-0.025172899589506414
WNEVSPQELIH	11	Unmodified	_WNEVSPQELIH_					0	0	0		ENST00000553480.1_1_14:45331723-45332152:-|nuORF	ENST00000553480.1_1_14:45331723-45332152:-|nuORF	ENST00000553480.1_1_14:45331723-45332152:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	676.3348999023438	2	676.335684	1350.65681	0.59109	0.00039978	-3.1078	-0.0021019	-2.5167	-0.0017021	676.3337799417365	31.731	0.25967	31.356	31.174	31.434	-0.37529					7	4	2	0	0	0	0.72419	1	11537	11537		12.873	0.63195	1	4567300			38341	8769	24603	24727	36898	36898					-0.004487342704351249
WNEVSPQELIH	11	Unmodified	_WNEVSPQELIH_					0	0	0		ENST00000553480.1_1_14:45331723-45332152:-|nuORF	ENST00000553480.1_1_14:45331723-45332152:-|nuORF	ENST00000553480.1_1_14:45331723-45332152:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S3	3		2	676.335684	1350.65681	0.84059	0.00056852	-3.6528	-0.0024705	-2.8122	-0.001902	676.3331777123663	31.64	0.36496	31.369	31.169	31.534	-0.27027	0.0065873	-0.00013917	NaN	12.873	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2431800			38342	8769	24603	24727							-0.004487342704351249
WNGRVKNKA	9	Unmodified	_WNGRVKNKA_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MSMS	HCT116MG_D190212_S1	1	358.2067565917969	3	358.205197	1071.59376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.635	1	27.635	27.135	28.135	0								0	0	0	0.76995	1	10036	10036		1.0715	0.67075	1		+		38343	14024	24604	24728	36899	36899					0.06082789522861276
WNGYHWFWFWF	11	Unmodified	_WNGYHWFWFWF_					0	0	0			REV__CAPN14|p.R136W|1|0.21|ENSG00000214711|chr2:31202142-31202142|G/A|missense_variant	REV__CAPN14|p.R136W|1|0.21|ENSG00000214711|chr2:31202142-31202142|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	838.3651733398438	2	838.367121	1674.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.607	1	46.236	45.736	46.736	-0.37134								0	0	0	0.96208	1	17212	17212		0	0	1		+		38344	10087	24605	24729	36900	36900					-0.09068123691758956
WNLILSAPT	9	Unmodified	_WNLILSAPT_					0	0	0			REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	REV__tr|U7SU67|U7SU67_FUSNUNon-specificserine/threonineproteinkinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01120PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	507.7482604980469	2	507.784567	1013.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.993	1	45.681	45.181	46.181	-0.31206								0	0	0	0.56943	1	17237	17237		25.399	11.891	1		+		38345	17821	24606	24730	36901	36901					0.048346444486242035
WNLLILLWFLW	11	Unmodified	_WNLLILLWFLW_					0	0	0		ENST00000254928.9_1_17:27184972-27185463:+|nuORF	ENST00000254928.9_1_17:27184972-27185463:+|nuORF	ENST00000254928.9_1_17:27184972-27185463:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	758.9415893554688	2	758.939391	1515.86423	1.0509	0.00079756	0.17954	0.00013626	1.2304	0.00093382	758.9400512827957	61.48	0.46782	61.338	61.26	61.727	-0.14227					9	8	2	0	0	0	0.74191	1	23846	23846		1.3295	0.25807	1	3989700			38346	6813	24607	24731	36902	36902					0.12693124735574202
WNQLKKPLVR	10	Unmodified	_WNQLKKPLVR_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MSMS	HCT116MG_D190212_S1	1	427.9295959472656	3	427.931185	1280.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.642	1	54.642	54.142	55.142	0								0	0	0	0.96377	1	20960	20960		0.69767	0.07084	1		+		38347	12763	24608	24732	36903	36903					0.14257039722019726
WPEDITKWPI	10	Unmodified	_WPEDITKWPI_					0	0	0		ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.892284	1283.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6237	1	8.403	7.903	8.903	-0.22071								0	0	0	0.97045	1	2634	2634		0.15932	0	1				38348	847	24609	24733	36904	36904					0.024542567115986458
WPGPPGTP	8	Unmodified	_WPGPPGTP_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-MSMS	HCT116MG_D190212_S1	1	404.7032775878906	2	404.703046	807.391539	0.065414	2.6473E-05	0.27179	0.00010999	0.3372	0.00013647	404.7031463286015	29.466	0.2084	29.466	29.373	29.581	0					5	3	2	0	0	0	0.77285	1	10791	10791		14.582	0	1	6356800			38349	6394	24610	24734	36905	36905					-0.01986113882560403
WPLIFLLCV	9	Unmodified	_WPLIFLLCV_					0	0	0		ENST00000526482.1_1_14:92920194-92959969:+|nuORF;nc|ENSG00000140090|Q8NFF2-4|SLC24A4;nc|ENSG00000140090|Q8NFF2-2|SLC24A4;SLC24A4|p.L558Wfs*21|1|0.08|ENSG00000140090|chr14:92492191-92492191|G/-|frameshift_variant;nc|ENSG00000140090|Q8NFF2-3|SLC24A4;ENSG00000140090|ENST00000532405|SLC24A4	ENST00000526482.1_1_14:92920194-92959969:+|nuORF	ENST00000526482.1_1_14:92920194-92959969:+|nuORF	MSMS	HCT116MG_D190212_S1	1	552.3199462890625	2	552.319731	1102.62491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.778	1	30.778	30.278	31.278	0								0	0	0	0.76611	1	11301	11301		14.582	2.9414	1				38350	3654	24611	24735	36906	36906					0.07770226512707268
WPMYLKYRQ	9	Unmodified	_WPMYLKYRQ_					0	0	0		nc|ENSG00000106733|Q9NWW6-2|NMRK1;ENSG00000106733|ENST00000361092|NMRK1;ENST00000494066.1_1_9:77676466-77684110:-|nuORF	nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	MSMS	HCT116MG_D190212_S3	3	429.0886535644531	3	428.890109	1283.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1156	1	7.1295	6.6295	7.6295	0.013901								0	0	0	0.77018	1	2147	2147		0.26902	0.033176	1				38351	2094	24612	24736	36907	36907					0.018020402792217283
WPNFGLPVP	9	Unmodified	_WPNFGLPVP_					0	0	0			REV__ENST00000417185.6_1_3:38049266-38049721:-|nuORF	REV__ENST00000417185.6_1_3:38049266-38049721:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	513.7734375	2	513.774003	1025.53345	0.24187	0.00012426	-0.39085	-0.00020081	-0.14898	-7.6543E-05	513.7736483598026	42.324	0.67361	41.948	41.632	42.305	-0.37565					23	12	3	0	0	0	0.17018	1	15506	15506		44.407	4.4573	1	5983300	+		38352	15485	24613	24737	36908	36908					0.021706791397718916
WPNFGLPVP	9	Unmodified	_WPNFGLPVP_					0	0	0			REV__ENST00000417185.6_1_3:38049266-38049721:-|nuORF	REV__ENST00000417185.6_1_3:38049266-38049721:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	513.774003	1025.53345	0.24187	0.00012426	-0.39085	-0.00020081	-0.14898	-7.6543E-05	513.7736483598026	42.324	0.67361	41.948	41.632	42.305	-0.37565	-0.034527	-0.00010422	NaN	44.407	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5983300	+		38353	15485	24613	24737							0.021706791397718916
WPNWRSQPP	9	Unmodified	_WPNWRSQPP_					0	0	0			REV__ENST00000436565.2_1_13:77559963-77560284:+|nuORF	REV__ENST00000436565.2_1_13:77559963-77560284:+|nuORF	MSMS	HCT116MG_D190212_S3	3	584.2896118164062	2	584.28834	1166.56213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.148	1	34.85	34.35	35.35	-0.29797								0	0	0	0.56943	1	12963	12963		25.399	9.2502	1		+		38354	15627	24614	24738	36909	36909					-0.014492032310954528
WPRRTRKCAS	10	Unmodified	_WPRRTRKCAS_					0	0	0		ENST00000342505.4_1_1:65352011-65432179:-|nuORF	ENST00000342505.4_1_1:65352011-65432179:-|nuORF	ENST00000342505.4_1_1:65352011-65432179:-|nuORF	MSMS	HCT116MG_D190212_S1	1	630.8409423828125	2	630.840748	1259.66694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.993	1	10.993	10.493	11.493	0								0	0	0	0.97116	1	3420	3420		0	0	1				38355	7227	24615	24739	36910	36910					0.04749594973850435
WPVPENIEI	9	Unmodified	_WPVPENIEI_					0	0	0		ENST00000472809.5_1_2:62934317-62998533:+|nuORF;ENST00000494958.1_1_2:62934317-63053404:+|nuORF;EHBP1|p.N344Ifs*2|1|0.38|ENSG00000115504|chr2:62864894-62864894|A/-|frameshift_variant;EHBP1|p.T756Qfs*17|1|0.44|ENSG00000115504|chr2:62949001-62949001|A/-|frameshift_variant;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENST00000472809.5_1_2:62934317-62998533:+|nuORF	ENST00000472809.5_1_2:62934317-62998533:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	548.3462524414062	2	548.787307	1095.56006	0.50441	0.00027681	-0.33341	-0.00018297	0.171	9.3844E-05	548.7870202238463	57.256	0.25968	57.077	56.895	57.155	-0.17904					7	4	2	0	0	0	0.26911	1	22045	22045		0.6015	0	1	6456100			38356	762	24616	24740	36911	36911					0.016103232404248047
WPWRRRKKRVP	11	Unmodified	_WPWRRRKKRVP_					0	0	0		ENST00000456101.6_1_6:109766698-109772967:-|nuORF;MICAL1|p.T754Qfs*150|1|0.53|ENSG00000135596|chr6:109446741-109446741|C/-|frameshift_variant	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MSMS	HCT116MG_D190212_S4	4	782.9767456054688	2	782.976028	1563.9375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.722	1	55.41	54.91	55.91	-0.312								0	0	0	0.95954	1	20872	20872		1.3295	1.3295	1				38357	8023	24617	24741	36912	36912					0.17809111021347235
WPWRWREWRPW	11	Unmodified	_WPWRWREWRPW_					0	0	0		ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MSMS	HCT116MG_D190212_S2	2	580.9619140625	3	580.960138	1739.85858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.679	1	50.507	50.007	51.007	-0.1719								0	0	0	0.96208	1	19427	19427		0	0	1				38358	9020	24618	24742	36913	36913					0.018248389964355738
WQCKLPAIK	9	Unmodified	_WQCKLPAIK_					0	0	0		ENST00000490632.1_1_2:111406757-111408294:-|nuORF;BUB1|p.V819Gfs*61|1|0.11|ENSG00000169679|chr2:110642126-110642127|-/C|frameshift_variant;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000490632.1_1_2:111406757-111408294:-|nuORF	ENST00000490632.1_1_2:111406757-111408294:-|nuORF	MSMS	HCT116MG_D190212_S1	1	362.8756408691406	3	362.8758	1085.60557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.671	1	11.671	11.171	12.171	0								0	0	0	0.77025	1	3694	3694		0	0	1				38359	288	24619	24743	36914	36914					0.0661927022179043
WQEELNEVGP	10	Unmodified	_WQEELNEVGP_					0	0	0		ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant;ABCC5|p.L1090Cfs*26|1|0.47|ENSG00000114770|chr3:183947469-183947469|A/-|frameshift_variant;ABCC5|p.L1090Vfs*62|2|0.19|ENSG00000114770|chr3:183947469-183947470|AA/-|frameshift_variant;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;nc|ENSG00000114770|O15440-4|ABCC5;nc|ENSG00000114770|O15440-3|ABCC5;nc|ENSG00000114770|O15440-2|ABCC5	ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant	ABCC5|p.G855Afs*14|1|0.45|ENSG00000114770|chr3:183953189-183953189|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	600.7804565429688	2	600.78021	1199.54587	0.47443	0.00028503	0.47513	0.00028545	0.94956	0.00057048	600.7798779233316	41.797	0.49048	41.494	41.342	41.833	-0.30257					19	11	2	0	0	0	0.7974	1	15560	15560		12.241	1.4411	1	9810500			38360	10	24620	24744	36915	36915					-0.04592373978539399
WQEEMELYR	9	Oxidation (M)	_WQEEM(Oxidation (M))ELYR_		WQEEM(1)ELYR		WQEEM(86)ELYR	0	0	1		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	HCT116MG_D190212_S1	1	650.2879638671875	2	650.287345	1298.56014	0.81736	0.00053152	0.301	0.00019573	1.1184	0.00072725	650.2873395436604	35.241	0.41063	35.241	34.909	35.319	0					11	7	2	0	0	0	0.030039	1	13131	13131		86.332	40.632	1	10083000			38361	2597	24621	24745	36916	36916		53			-0.0772004482189459
WQEEMELYR	9	Oxidation (M)	_WQEEM(Oxidation (M))ELYR_		WQEEM(1)ELYR		WQEEM(86)ELYR	0	0	1		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	HCT116MG_D190212_S3	3	650.2879638671875	2	650.287345	1298.56014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.456	1	35.157	34.657	35.657	-0.29922								0	0	0	0.025932	1	13086	13086		86.332	40.632	1				38362	2597	24621	24745	36917	36917		53			-0.0772004482189459
WQEEMELYR	9	Oxidation (M)	_WQEEM(Oxidation (M))ELYR_		WQEEM(1)ELYR		WQEEM(120)ELYR	0	0	1		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MSMS	HCT116MG_D190212_S4	4	650.2880859375	2	650.287345	1298.56014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.471	1	35.085	34.585	35.585	-0.38606								0	0	0	0.0046152	1	12988	12988		118.07	72.369	1				38363	2597	24621	24745	36918	36918		53			-0.0772004482189459
WQEEMELYR	9	Oxidation (M)	_WQEEM(Oxidation (M))ELYR_					0	0	1		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	650.287345	1298.56014	0.64332	0.00041834	-0.49751	-0.00032352	0.14581	9.4819E-05	650.2878123435073	35.153	0.20704	34.994	34.865	35.072	-0.15834	-0.12345	-0.00092996	NaN	86.332	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12112000			38364	2597	24621	24745				53			-0.0772004482189459
WQEESCDSD	9	Unmodified	_WQEESCDSD_					0	0	0			REV__ENST00000552478.5_1_12:56345656-56345980:+|nuORF	REV__ENST00000552478.5_1_12:56345656-56345980:+|nuORF	MSMS	HCT116MG_D190212_S1	1	549.6890258789062	2	549.687661	1097.36077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.014	1	61.014	60.514	61.514	0								0	0	0	0.77008	1	23533	23533		0.6015	0	1		+		38365	16431	24622	24746	36919	36919					-0.18401724840441602
WQEESCDSD	9	Unmodified	_WQEESCDSD_					0	0	0			REV__ENST00000552478.5_1_12:56345656-56345980:+|nuORF	REV__ENST00000552478.5_1_12:56345656-56345980:+|nuORF	MSMS	HCT116MG_D190212_S1	1	549.6889038085938	2	549.687661	1097.36077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.61	1	61.61	61.11	62.11	0								0	0	0	0.77008	1	23775	23775		0.6015	0	1		+		38366	16431	24622	24746	36920	36920					-0.18401724840441602
WQEPSTPM	8	Unmodified	_WQEPSTPM_					0	0	0		RNF43|p.H295Ifs*124|1|0.71|ENSG00000108375|chr17:58360218-58360218|G/-|frameshift_variant	RNF43|p.H295Ifs*124|1|0.71|ENSG00000108375|chr17:58360218-58360218|G/-|frameshift_variant	RNF43|p.H295Ifs*124|1|0.71|ENSG00000108375|chr17:58360218-58360218|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	488.2177429199219	2	488.21566	974.416767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.888	1	45.516	45.016	46.016	-0.37206								0	0	0	0.8837	1	16944	16944		5.2307	0	1				38367	18118	24623	24747	36921	36921					-0.0714642714231104
WQIILTWLPL	10	Unmodified	_WQIILTWLPL_					0	0	0			REV__ENST00000261488.10_1_13:43987046-43987121:-|nuORF	REV__ENST00000261488.10_1_13:43987046-43987121:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	428.256591796875	3	428.256787	1281.74853	-0.080305	-3.4391E-05	0.92956	0.00039809	0.84926	0.0003637	428.25699561750935	53.438	0.8266	53.249	52.758	53.584	-0.1894					21	15	2	0	0	0	0.31178	1	20420	20420		1.9064	0.83491	1	10908000	+		38368	14626	24624	24748	36922	36922					0.11892600884698368
WQIILTWLPL	10	Unmodified	_WQIILTWLPL_					0	0	0			REV__ENST00000261488.10_1_13:43987046-43987121:-|nuORF	REV__ENST00000261488.10_1_13:43987046-43987121:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	428.2574462890625	3	428.256787	1281.74853	0.21203	9.0802E-05	1.3752	0.00058893	1.5872	0.00067974	428.25727365338355	52.586	1.2982	52.246	51.679	52.978	-0.34023					39	24	2	0	0	0	0.88752	1	19534	19534		1.9064	1.4519	1	3298900	+		38369	14626	24624	24748	36923	36923					0.11892600884698368
WQKIQAELR	9	Unmodified	_WQKIQAELR_					0	0	0			REV__CON__Q9D312	REV__CON__Q9D312	MSMS	HCT116MG_D190212_S1	1	391.22479248046875	3	391.224257	1170.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.841	1	47.841	47.341	48.341	0								0	0	0	0.76967	1	18188	18188		1.0715	0	1		+	+	38370	10278	24625	24749	36924	36924					0.07244212008549766
WQKKRRWH	8	Unmodified	_WQKKRRWH_					0	0	0			REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant	REV__ERICH3|p.T766Rfs*23|1|0.29|ENSG00000178965|chr1:74573414-74573414|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	612.8466796875	2	612.84669	1223.67883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.509	1	59.509	59.009	60.009	0								0	0	0	0.8837	1	22934	22934		0	0	1		+		38371	16797	24626	24750	36925	36925					0.07593579779290849
WQKLIVWKFPP	11	Unmodified	_WQKLIVWKFPP_					0	0	0		nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10	nc|ENSG00000086827|O43264-2|ZW10	nc|ENSG00000086827|O43264-2|ZW10	MULTI-MSMS	HCT116MG_D190212_S1	1	481.6185302734375	3	481.283336	1440.82818	0.2157	0.00010381	0.12361	5.9492E-05	0.33931	0.00016331	481.2831698349105	52.56	1.3458	52.56	51.807	53.153	0					46	25	3	0	0	0	0.74191	1	19954	19954		0.094841	0.011491	1	36944000			38372	1475	24627	24751	36926	36926					0.1253966755868987
WQKLIVWKFPP	11	Unmodified	_WQKLIVWKFPP_					0	0	0		nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10	nc|ENSG00000086827|O43264-2|ZW10	nc|ENSG00000086827|O43264-2|ZW10	MULTI-MSMS	HCT116MG_D190212_S2	2	721.4218139648438	2	721.421365	1440.82818	0.87166	0.00062883	-0.051722	-3.7313E-05	0.81994	0.00059152	721.4213188542967	53.477	0.77394	53.287	52.913	53.687	-0.1894					28	14	3	0	0	0	0.74191	1	20520	20520		1.4819	0	1	17688000			38373	1475	24627	24751	36927	36927					0.1253966755868987
WQKNSPRVP	9	Unmodified	_WQKNSPRVP_					0	0	0		nc|ENSG00000261480|H3BSY2-3|GOLGA8M;ENSG00000249931|ENST00000512626|GOLGA8K;ENSG00000261247|ENST00000569052|GOLGA8T;nc|ENSG00000291004|A6NC78|GOLGA8IP;ENSG00000261794|ENST00000566740|GOLGA8H;ENSG00000188626|ENST00000563027|GOLGA8M;ENSG00000179938|ENST00000567927|GOLGA8J	nc|ENSG00000261480|H3BSY2-3|GOLGA8M	nc|ENSG00000261480|H3BSY2-3|GOLGA8M	MSMS	HCT116MG_D190212_S3	3	371.20635986328125	3	371.205085	1110.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.279	1	59.015	58.515	59.515	-0.26405								0	0	0	0.76995	1	22570	22570		1.0715	0.20709	1				38374	5574	24628	24752	36928	36928					0.04255369803013309
WQKVLPRRRT	10	Unmodified	_WQKVLPRRRT_					0	0	0		ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	ENSG00000183978|ENST00000328434|COA3	MULTI-MSMS	HCT116MG_D190212_S1	1	670.4065551757812	2	670.407112	1338.79967	0.77639	0.0005205	-2.1501	-0.0014414	-1.3737	-0.00092094	670.4058182249676	55.684	0.20592	55.684	55.554	55.76	0					5	3	2	0	0	0	0.88752	1	21416	21416		1.6526	0.32309	1	43725000			38375	5753	24629	24753	36929	36929					0.14382362702099272
WQKWITACC	9	Unmodified	_WQKWITACC_					0	0	0			REV__ENST00000506462.5_1_4:108745790-108816604:+|nuORF	REV__ENST00000506462.5_1_4:108745790-108816604:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	569.76220703125	2	569.762255	1137.50996	0.39046	0.00022247	-0.33345	-0.00018999	0.057011	3.2483E-05	569.761854244287	36.784	0.3117	36.483	36.353	36.665	-0.30113					8	5	2	0	0	0	0.53593	1	13611	13611		14.838	1.7958	1	10205000	+		38376	16149	24630	24754	36930	36930					-0.053298259607345244
WQKWITACC	9	Unmodified	_WQKWITACC_					0	0	0			REV__ENST00000506462.5_1_4:108745790-108816604:+|nuORF	REV__ENST00000506462.5_1_4:108745790-108816604:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	569.311279296875	2	569.762255	1137.50996	0.39046	0.00022247	-0.33345	-0.00018999	0.057011	3.2483E-05	569.761854244287	36.784	0.3117	36.483	36.353	36.665	-0.30113					8	5	2	0	0	0	0.25347	1	13583	13583		14.838	1.7958	1	10205000	+		38377	16149	24630	24754	36931	36931					-0.053298259607345244
WQLLERDGGT	10	Unmodified	_WQLLERDGGT_					0	0	0			REV__ENSG00000248099|ENST00000317306|INSL3	REV__ENSG00000248099|ENST00000317306|INSL3	MULTI-SECPEP	HCT116MG_D190212_S3	3	587.3275756835938	2	587.796195	1173.57784	0.49718	0.00029224	0.17907	0.00010526	0.67625	0.0003975	587.7959367159514	39.401	0.26841	39.1	38.924	39.192	-0.30137					6	4	2	0	0	0	0.31174	1	14631	14631		0.40072	0	1	2910900	+		38378	14370	24631	24755	36932	36932					-0.0020096150471999863
WQLPRFQKKMP	11	Unmodified	_WQLPRFQKKMP_					0	0	0		MAP3K19|p.K770Vfs*5|1|0.34|ENSG00000176601|chr2:134986563-134986564|TT/-|frameshift_variant;nc|ENSG00000176601|Q56UN5-3|MAP3K19;ENSG00000176601|ENST00000392915|MAP3K19	MAP3K19|p.K770Vfs*5|1|0.34|ENSG00000176601|chr2:134986563-134986564|TT/-|frameshift_variant	MAP3K19|p.K770Vfs*5|1|0.34|ENSG00000176601|chr2:134986563-134986564|TT/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	729.9056396484375	2	729.905556	1457.79656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.743	1	54.42	53.92	54.92	-0.32349								0	0	0	0.95636	1	20478	20478		2.9952	0.49676	1				38379	5425	24632	24756	36933	36933					0.08597351533057918
WQLQNEHLLLR	11	Unmodified	_WQLQNEHLLLR_					0	0	0			REV__ENSG00000185924|ENST00000331238|RTN4RL1	REV__ENSG00000185924|ENST00000331238|RTN4RL1	MULTI-MSMS	HCT116MG_D190212_S1	1	483.9357604980469	3	483.936887	1448.78883	0.023097	1.1178E-05	-2.4787	-0.0011995	-2.4556	-0.0011883	483.9359107032401	50.869	0.362	50.869	50.678	51.04	0					10	6	2	0	0	0	0.74191	1	19435	19435		1.2148	0.10508	1	21223000	+		38380	13865	24633	24757	36934	36934					0.08238915537162939
WQLRIYHSWKK	11	Unmodified	_WQLRIYHSWKK_					0	0	0			REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MSMS	HCT116MG_D190212_S2	2	772.9277954101562	2	772.927877	1543.8412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9737	1	9.7089	9.2089	10.209	-0.26472								0	0	0	0.96208	1	3135	3135		0	0	1		+		38381	15650	24634	24758	36935	36935					0.09103498670742738
WQQQNWYAFP	10	Unmodified	_WQQQNWYAFP_					0	0	0			REV__B3GNT8|p.S82Pfs*86|1|0.35|ENSG00000177191|chr19:41426536-41426536|C/-|frameshift_variant	REV__B3GNT8|p.S82Pfs*86|1|0.35|ENSG00000177191|chr19:41426536-41426536|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	684.3096313476562	2	684.312012	1366.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.541	1	38.541	38.041	39.041	0								0	0	0	0.96291	1	14432	14432		1.8442	0.36234	1		+		38382	10028	24635	24759	36936	36936					-0.05916968750761953
WQQRRWRQQED	11	Unmodified	_WQQRRWRQQED_					0	0	0		ENST00000416426.6_2_17:55729477-55752284:+|nuORF	ENST00000416426.6_2_17:55729477-55752284:+|nuORF	ENST00000416426.6_2_17:55729477-55752284:+|nuORF	MSMS	HCT116MG_D190212_S4	4	808.3958129882812	2	808.395461	1614.77637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.055	1	16.889	16.389	17.389	-0.16664								0	0	0	0.96208	1	5630	5630		0	0	1				38383	7757	24636	24760	36937	36937					-0.006427278731734987
WQRCLTWL	8	Unmodified	_WQRCLTWL_					0	0	0			REV__nc|ENSG00000152467|Q8NBB4-2|ZSCAN1	REV__nc|ENSG00000152467|Q8NBB4-2|ZSCAN1	MSMS	HCT116MG_D190212_S4	4	553.285888671875	2	553.284211	1104.55387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.681	1	47.312	46.812	47.812	-0.36907								0	0	0	0.8837	1	17634	17634		2.5775	0	1		+		38384	12630	24637	24761	36938	36938					0.005775265278998631
WQRLFLPVP	9	Unmodified	_WQRLFLPVP_					0	0	0		ENST00000254770.2_1_7:55492999-55493095:+|nuORF	ENST00000254770.2_1_7:55492999-55493095:+|nuORF	ENST00000254770.2_1_7:55492999-55493095:+|nuORF	MSMS	HCT116MG_D190212_S3	3	578.3379516601562	2	578.337301	1154.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.399	1	31.129	30.629	31.629	-0.27028								0	0	0	0.76877	1	11470	11470		5.2307	1.6342	1				38385	6811	24638	24762	36939	36939					0.08890605364877047
WQRLRRRLLRP	11	Unmodified	_WQRLRRRLLRP_					0	0	0			REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	MSMS	HCT116MG_D190212_S1	1	775.4855346679688	2	775.48676	1548.95897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.569	1	56.569	56.069	57.069	0								0	0	0	0.96149	1	21750	21750		0.30703	0	1		+		38386	14971	24639	24763	36940	36940					0.20644496050113048
WQRRPRRRRRL	11	Unmodified	_WQRRPRRRRRL_					0	0	0			REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF	REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF	MSMS	HCT116MG_D190212_S2	2	818.5028686523438	2	818.503807	1634.99306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.339	1	57.162	56.662	57.662	-0.17659								0	0	0	0.96208	1	22138	22138		0	0	1		+		38387	14756	24640	24764	36941	36941					0.20096337261679764
WQRRRRKEGMP	11	Unmodified	_WQRRRRKEGMP_					0	0	0			REV__ENST00000355280.10_1_17:4736705-4736843:+|nuORF	REV__ENST00000355280.10_1_17:4736705-4736843:+|nuORF	MSMS	HCT116MG_D190212_S1	1	750.4114990234375	2	750.40986	1498.80517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.913	1	44.913	44.413	45.413	0								0	0	0	0.9598	1	17003	17003		1.1933	0.12188	1		+		38388	15035	24641	24765	36942	36942					0.07571718222288837
WQSAGISKEL	10	Unmodified	_WQSAGISKEL_					0	0	0		ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	MSMS	HCT116MG_D190212_S1	1	559.7972412109375	2	559.795663	1117.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.77	1	46.77	46.27	47.27	0								0	0	0	0.91638	1	17754	17754		12.241	0	1				38389	4182	24642	24766	36943	36943					0.022688241263722375
WQVQDVVPI	9	Unmodified	_WQVQDVVPI_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3;KCTD3|p.R348Afs*5|1|0.41|ENSG00000136636|chr1:215602097-215602098|-/C|frameshift_variant	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MSMS	HCT116MG_D190212_S1	1	542.2969360351562	2	542.295299	1082.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.498	1	56.498	55.998	56.998	0								0	0	0	0.768	1	21722	21722		7.9102	0.62092	1				38390	3426	24643	24767	36944	36944					0.038060294773458736
WQWLKWRRLRR	11	Unmodified	_WQWLKWRRLRR_					0	0	0		ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	MSMS	HCT116MG_D190212_S2	2	842.8975830078125	2	842.494585	1682.97462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.522	1	41.454	40.954	41.954	-0.068199								0	0	0	0.96141	1	15692	15692		0.35063	0.35063	1				38391	8754	24644	24768	36945	36945					0.16044782567132643
WQWLKWRRLRR	11	Unmodified	_WQWLKWRRLRR_					0	0	0		ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	MSMS	HCT116MG_D190212_S4	4	842.4947509765625	2	842.494585	1682.97462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.646	1	49.284	48.784	49.784	-0.36213								0	0	0	0.96208	1	18422	18422		0	0	1				38392	8754	24644	24768	36946	36946					0.16044782567132643
WRAANRRRWQK	11	Unmodified	_WRAANRRRWQK_					0	0	0			REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	MSMS	HCT116MG_D190212_S4	4	764.4292602539062	2	764.429442	1526.84433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.494	1	34.109	33.609	34.609	-0.38558								0	0	0	0.96003	1	12598	12598		1.0715	0.76443	1		+		38393	14698	24645	24769	36947	36947					0.10198186568140954
WRARFLIY	8	Unmodified	_WRARFLIY_					0	0	0			REV__SERPINA12|p.F209L|1|0.28|ENSG00000165953|chr14:94497771-94497771|G/T|missense_variant	REV__SERPINA12|p.F209L|1|0.28|ENSG00000165953|chr14:94497771-94497771|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	562.8226318359375	2	562.821818	1123.62908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.777	1	62.554	62.054	63.054	-0.22315								0	0	0	0.8837	1	23981	23981		0.69038	0	1		+		38394	17507	24646	24770	36948	36948					0.07221452050657717
WRASLVHK	8	Unmodified	_WRASLVHK_					0	0	0			REV__ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant	REV__ADARB2|p.A703Rfs*7|1|0.36|ENSG00000185736|chr10:1183306-1183306|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	498.79107666015625	2	498.790518	995.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.80899	1	0.80273	0.30273	1.3027	-0.00626								0	0	0	0.8837	1	273	273		2.3027	0	1		+		38395	9863	24647	24771	36949	36949					0.06852305982454254
WRCRRPFR	8	Unmodified	_WRCRRPFR_					0	0	0			REV__ENST00000313654.13_2_18:21422380-21422625:+|nuORF	REV__ENST00000313654.13_2_18:21422380-21422625:+|nuORF	MSMS	HCT116MG_D190212_S1	1	588.82080078125	2	588.819618	1175.62468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.269	1	12.269	11.769	12.769	0								0	0	0	0.8837	1	3927	3927		0	0	1		+		38396	14848	24648	24772	36950	36950					0.04389664356085632
WRERWQEYFTF	11	Unmodified	_WRERWQEYFTF_					0	0	0		ENST00000367103.3_1_1:206907394-206907589:+|nuORF	ENST00000367103.3_1_1:206907394-206907589:+|nuORF	ENST00000367103.3_1_1:206907394-206907589:+|nuORF	MSMS	HCT116MG_D190212_S4	4	824.3864135742188	2	824.388782	1646.76301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.194	1	28.853	28.353	29.353	-0.34059								0	0	0	0.95954	1	10532	10532		1.3295	0	1				38397	7379	24649	24773	36951	36951					-0.034499787051345265
WRFWIWERRW	10	Unmodified	_WRFWIWERRW_					0	0	0			REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	REV__KRT6C|p.G65Rfs*80|1|0.06|ENSG00000170465|chr12:52473520-52473545|CCAATGGAGATCCTCTTGGAGCCCCC/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	540.9656372070312	3	540.94935	1619.82622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.527	1	48.384	47.884	48.884	-0.1437								0	0	0	0.96404	1	18543	18543		1.5923	0.96546	1		+		38398	16937	24650	24774	36952	36952					0.04110051593420394
WRGGLLAASRS	11	Unmodified	_WRGGLLAASRS_					0	0	0			REV__ENSG00000130312|ENST00000252602|MRPL34	REV__ENSG00000130312|ENST00000252602|MRPL34	MSMS	HCT116MG_D190212_S4	4	587.6665649414062	2	587.327996	1172.64144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.081	1	47.712	47.212	48.212	-0.36907								0	0	0	0.95196	1	17795	17795		5.2969	0.76802	1		+		38399	11915	24651	24775	36953	36953					0.0620244372300931
WRHFQAYLW	9	Unmodified	_WRHFQAYLW_					0	0	0		ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENST00000462616.1_1_9:139311477-139313651:+|nuORF	ENST00000462616.1_1_9:139311477-139313651:+|nuORF	MSMS	HCT116MG_D190212_S1	1	653.8277587890625	2	653.827632	1305.64071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.042	1	11.042	10.542	11.542	0								0	0	0	0.7701	1	3440	3440		0.52476	0.066424	1				38400	8067	24652	24776	36954	36954					0.00011649073962871626
WRHFYWYLTNE	11	Unmodified	_WRHFYWYLTNE_					0	0	0		ENST00000480942.1_1_6:34392413-34392935:-|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|466|19.44|0.0|20.89|-|ENST00000494077|RPS10-NUDT3,RPS10;ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENSG00000124614|ENST00000648437|RPS10;ENST00000477729.1_1_15:60696796-60696997:+|nuORF;nc|ENSG00000101278|Q9NQ39|RPS10P5	ENST00000480942.1_1_6:34392413-34392935:-|nuORF	ENST00000480942.1_1_6:34392413-34392935:-|nuORF	MSMS	HCT116MG_D190212_S3	3	807.8802490234375	2	807.87805	1613.74155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.48	1	50.166	49.666	50.666	-0.31381								0	0	0	0.96192	1	19036	19036		0.30703	0.30703	1				38401	457	24653	24777	36955	36955					-0.04077363733790662
WRKLQHQTK	9	Unmodified	_WRKLQHQTK_					0	0	0			REV__ENST00000475946.5_1_6:7211140-7211812:+|nuORF	REV__ENST00000475946.5_1_6:7211140-7211812:+|nuORF	MSMS	HCT116MG_D190212_S2	2	612.8530883789062	2	612.851638	1223.68872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.799	1	57.624	57.124	58.124	-0.17494								0	0	0	0.76902	1	22324	22324		4.3292	0	1		+		38402	15910	24654	24778	36956	36956					0.08582722994015057
WRKQSRRK	8	Unmodified	_WRKQSRRK_					0	0	0		ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	MSMS	HCT116MG_D190212_S1	1	572.84521484375	2	572.844148	1143.67374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.705	1	13.705	13.205	14.205	0								0	0	0	0.8837	1	4459	4459		0.69038	0	1				38403	6572	24655	24779	36957	36957					0.10765275916696737
WRKRFLLL	8	Unmodified	_WRKRFLLL_					0	0	0			REV__nc|ENSG00000105369|P11912-2|CD79A	REV__nc|ENSG00000105369|P11912-2|CD79A	MSMS	HCT116MG_D190212_S2	2	566.3614501953125	2	566.361111	1130.70767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.7571	1	3.695	3.195	4.195	-0.062129								0	0	0	0.8837	1	1193	1193		0	0	1		+		38404	11250	24656	24780	36958	36958					0.14754304355756176
WRKRWRRWRW	10	Unmodified	_WRKRWRRWRW_					0	0	0		ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MSMS	HCT116MG_D190212_S2	2	836.4747924804688	2	836.471444	1670.92833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.126	1	14.799	14.299	15.299	-0.32684								0	0	0	0.97116	1	5003	5003		0	0	1				38405	6850	24657	24781	36959	36959					0.11970762455712247
WRLCLFGAPLA	11	Unmodified	_WRLCLFGAPLA_					0	0	0			REV__nc|ENSG00000172782|Q8N9I5-2|FADS6	REV__nc|ENSG00000172782|Q8N9I5-2|FADS6	MSMS	HCT116MG_D190212_S2	2	624.2363891601562	2	623.841894	1245.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.933	1	11.643	11.143	12.143	-0.28953								0	0	0	0.96208	1	3875	3875		0	0	1		+		38406	13404	24658	24782	36960	36960					0.056226306589223896
WRLLEEDPVQ	10	Unmodified	_WRLLEEDPVQ_					0	0	0			REV__ENSG00000205476|ENST00000380243|CCDC85C	REV__ENSG00000205476|ENST00000380243|CCDC85C	MSMS	HCT116MG_D190212_S1	1	429.0886535644531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6447	1	8.6447	8.1447	9.1447	0								0	0	0	0.97045	1	2608	2608		0.15932	0.15932	1		+		38407	14226	24659	24783	36961	36961					0.020521672179029338
WRLLKNYYKWR	11	Unmodified	_WRLLKNYYKWR_					0	0	0		TTPA|p.V144Yfs*7|1|0.05|ENSG00000137561|chr8:63066026-63066027|-/TTACGGTA|frameshift_variant;ENSG00000137561|ENST00000260116|TTPA	TTPA|p.V144Yfs*7|1|0.05|ENSG00000137561|chr8:63066026-63066027|-/TTACGGTA|frameshift_variant	TTPA|p.V144Yfs*7|1|0.05|ENSG00000137561|chr8:63066026-63066027|-/TTACGGTA|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	813.0806274414062	2	813.456802	1624.89905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.771	1	43.465	42.965	43.965	-0.30616								0	0	0	0.96149	1	16343	16343		0.30703	0	1				38408	3488	24660	24784	36962	36962					0.11159760596183332
WRLRHFVSWLW	11	Unmodified	_WRLRHFVSWLW_					0	0	0		ENST00000451837.5_1_22:24056493-24059477:-|nuORF;ENST00000452737.5_1_22:24056401-24059477:-|nuORF;nc|ENSG00000272578|Q6P575|GUSBP11;ENST00000435868.1_1_22:24056493-24057363:-|nuORF;ENST00000422506.5_1_22:24056493-24059433:-|nuORF;ENST00000444220.2_1_22:24056424-24059433:-|nuORF	ENST00000451837.5_1_22:24056493-24059477:-|nuORF	ENST00000451837.5_1_22:24056493-24059477:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	794.43115234375	2	793.430587	1584.84662	0.84618	0.00067139	0.11816	9.3754E-05	0.96435	0.00076514	793.4307280912409	21.724	0.62555	21.724	21.437	22.063	0					41	11	6	0	0	0	0.74191	1	7605	7605		0	0	1	682610000			38409	7988	24661	24785	36963	36963					0.07759222253253029
WRLRHVVLFI	10	Unmodified	_WRLRHVVLFI_					0	0	0			REV__ENST00000574597.1_1_17:19575684-19576544:+|nuORF	REV__ENST00000574597.1_1_17:19575684-19576544:+|nuORF	MSMS	HCT116MG_D190212_S1	1	669.9127807617188	2	669.911499	1337.80845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.945	1	10.945	10.445	11.445	0								0	0	0	0.97116	1	3401	3401		0	0	1		+		38410	16590	24662	24786	36964	36964					0.1530533633858795
WRMIRQTP	8	Unmodified	_WRMIRQTP_					0	0	0		nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3	nc|ENSG00000049246|P56645|PER3	nc|ENSG00000049246|P56645|PER3	MSMS	HCT116MG_D190212_S1	1	363.1986389160156	3	363.199166	1086.57567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.376	1	32.376	31.876	32.876	0								0	0	0	0.8837	1	11945	11945		1.4819	0	1				38411	1040	24663	24787	36965	36965					0.035843312764882285
WRMRGGATRRG	11	Unmodified	_WRMRGGATRRG_					0	0	0		ENSG00000198680|ENST00000358022|TUSC1	ENSG00000198680|ENST00000358022|TUSC1	ENSG00000198680|ENST00000358022|TUSC1	MSMS	HCT116MG_D190212_S4	4	435.2352600097656	3	435.235273	1302.68399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.184	1	12.01	11.51	12.51	-0.1743								0	0	0	0.9619	1	3771	3771		0.094841	0	1				38412	6251	24664	24788	36966	36966					0.04475515579611056
WRMVEEQL	8	Unmodified	_WRMVEEQL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.E1665Sfs*10|1|0.39|ENSG00000173546|chr15:75677845-75677845|G/-|frameshift_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	HCT116MG_D190212_S1	1	545.7730712890625	2	545.771134	1089.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.752	1	16.752	16.252	17.252	0								0	0	0	0.8837	1	5659	5659		9.3474	1.1919	1				38413	5292	24665	24789	36967	36967					-0.013467874342040886
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	HCT116MG_D190212_S4	4	481.2837829589844	3	481.283503	1440.82868	0.34066	0.00016395	-0.0006955	-3.3473E-07	0.33996	0.00016362	481.2834254369364	54.752	1.1987	54.429	53.723	54.922	-0.32348					48	22	3	0	0	0	0.89372	1	20595	20595		0.15932	0.064481	1	15745000			38414	3175	24666	24790	36968	36968					0.12589900051079894
WRQEEELWEQ	10	Unmodified	_WRQEEELWEQ_					0	0	0		GOLGA6L2|p.R282W|1|0.15|ENSG00000174450|chr15:23441631-23441631|G/A|missense_variant	GOLGA6L2|p.R282W|1|0.15|ENSG00000174450|chr15:23441631-23441631|G/A|missense_variant	GOLGA6L2|p.R282W|1|0.15|ENSG00000174450|chr15:23441631-23441631|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	716.8291625976562	2	716.828223	1431.64189	1.0811	0.00077495	-0.2584	-0.00018523	0.82268	0.00058972	716.8283890939723	37.34	0.19767	37.34	37.249	37.447	0					5	3	2	0	0	0	0.75066	1	13966	13966		16.149	2.2431	1	11511000			38415	9184	24667	24791	36969	36969					-0.05666226138419006
WRQKRPRWDRV	11	Unmodified	_WRQKRPRWDRV_					0	0	0			REV__ENST00000526990.1_1_11:65350007-65350067:+|nuORF	REV__ENST00000526990.1_1_11:65350007-65350067:+|nuORF	MSMS	HCT116MG_D190212_S4	4	791.942138671875	2	791.944924	1581.8753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.261	1	49.902	49.402	50.402	-0.35878								0	0	0	0.96149	1	18668	18668		0.30703	0.30703	1		+		38416	16280	24668	24792	36970	36970					0.10763339882373657
WRQRRRRWPVR	11	Unmodified	_WRQRRRRWPVR_					0	0	0		ENST00000264010.8_1_16:67596501-67605146:+|nuORF	ENST00000264010.8_1_16:67596501-67605146:+|nuORF	ENST00000264010.8_1_16:67596501-67605146:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	551.9334716796875	3	551.325814	1650.95561	0.50339	0.00027753	-4.0026	-0.0022067	-3.4992	-0.0019292	551.3228349046037	21.62	0.20844	21.62	21.437	21.646	0					5	3	2	0	0	0	0.3662	1	7545	7545		1.2148	1.2148	1	2068100			38417	6886	24669	24793	36971	36971					0.15617245996099882
WRQSSILRRWK	11	Unmodified	_WRQSSILRRWK_					0	0	0		ENST00000541760.1_1_11:73360074-73362936:+|nuORF;ENST00000544532.5_1_11:73360074-73362871:+|nuORF;nc|ENSG00000021300|Q9UF11-4|PLEKHB1;nc|ENSG00000021300|Q9UF11-2|PLEKHB1;nc|ENSG00000021300|Q9UF11-3|PLEKHB1;ENSG00000021300|ENST00000354190|PLEKHB1	ENST00000541760.1_1_11:73360074-73362936:+|nuORF	ENST00000541760.1_1_11:73360074-73362936:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	758.9408569335938	2	758.436401	1514.85825	0.71915	0.00054543	0.78879	0.00059825	1.5079	0.0011437	758.4385957960836	61.541	1.2463	61.541	61.158	62.404	0					88	23	5	0	0	0	0.74191	1	24050	24050		0.26902	0.26902	1	7932300			38418	941	24670	24794	36972	36972					0.12141419276576926
WRQWNRIFRW	10	Unmodified	_WRQWNRIFRW_					0	0	0		CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant;CACNA1S|p.P1346Qfs*78|1|0.24|ENSG00000081248|chr1:201051060-201051060|G/-|frameshift_variant;ENSG00000081248|ENST00000362061|CACNA1S	CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	CACNA1S|p.L1163Wfs*3|1|0.12|ENSG00000081248|chr1:201059227-201059227|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	774.4105834960938	2	774.410186	1546.80582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.934	1	24.559	24.059	25.059	-0.37521								0	0	0	0.96377	1	8957	8957		1.6526	0.32309	1				38419	308	24671	24795	36973	36973					0.054288809336185295
WRRGLRLQKRR	11	Unmodified	_WRRGLRLQKRR_					0	0	0		nc|ENSG00000179840|Q5SR53|PIK3CD-AS1;ENST00000377320.3_1_1:9713839-9714497:-|nuORF	nc|ENSG00000179840|Q5SR53|PIK3CD-AS1	nc|ENSG00000179840|Q5SR53|PIK3CD-AS1	MULTI-MSMS	HCT116MG_D190212_S1	1	762.9768676757812	2	762.976559	1523.93856	0.7224	0.00055118	0.073998	5.6459E-05	0.7964	0.00060763	762.9767105300286	60.814	1.9132	60.814	60.387	62.3	0					82	36	3	0	0	0	0.74191	3	23443	23443;23675;23903		0	0	1	37256000			38420	7525	24672	24796	36974;36975;36976	36974					0.19755325390269718
WRRGLRLQKRR	11	Unmodified	_WRRGLRLQKRR_					0	0	0		nc|ENSG00000179840|Q5SR53|PIK3CD-AS1;ENST00000377320.3_1_1:9713839-9714497:-|nuORF	nc|ENSG00000179840|Q5SR53|PIK3CD-AS1	nc|ENSG00000179840|Q5SR53|PIK3CD-AS1	MULTI-MSMS	HCT116MG_D190212_S1	1	508.9870300292969	3	508.986798	1523.93856	0.28437	0.00014474	0.20633	0.00010502	0.4907	0.00024976	508.9869920649524	60.999	1.1874	60.999	60.749	61.936	0					30	22	2	0	0	0	0.74191	1	23621	23621		0	0	1	13353000			38421	7525	24672	24796	36977	36977					0.19755325390269718
WRRGRTRWSRW	11	Unmodified	_WRRGRTRWSRW_					0	0	0			REV__ENST00000379565.7_1_X:20227482-20284914:-|nuORF	REV__ENST00000379565.7_1_X:20227482-20284914:-|nuORF	MSMS	HCT116MG_D190212_S1	1	534.9599609375	3	534.95902	1601.85523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.082	1	12.082	11.582	12.582	0								0	0	0	0.9619	1	3854	3854		0.094841	0.094841	1		+		38422	15260	24673	24797	36978	36978					0.07837588942470575
WRRKQKEKKPQ	11	Unmodified	_WRRKQKEKKPQ_					0	0	0			REV__CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant	REV__CCDC73|p.R1066Efs*13|1|0.08|ENSG00000186714|chr11:32602859-32602859|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	756.13037109375	2	756.449508	1510.88446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.855	1	47.486	46.986	47.986	-0.36907								0	0	0	0.95636	1	17704	17704		2.9952	1.8019	1		+		38423	10119	24674	24798	36979	36979					0.14945688448051442
WRRLRRLRRLQ	11	Unmodified	_WRRLRRLRRLQ_					0	0	0		ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	MSMS	HCT116MG_D190212_S4	4	536.7623901367188	3	537.009714	1608.00731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.811	1	46.439	45.939	46.939	-0.37134								0	0	0	0.96208	1	17294	17294		0	0	1				38424	8754	24675	24799	36980	36980					0.22762989689999813
WRRPRRRPRRK	11	Unmodified	_WRRPRRRPRRK_					0	0	0			REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MSMS	HCT116MG_D190212_S1	1	810.506591796875	2	810.506349	1618.99815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.292	1	48.292	47.792	48.792	0								0	0	0	0.96208	1	18371	18371		0	0	1		+		38425	14584	24676	24800	36981	36981					0.21340641124311333
WRRPWLSWNCR	11	Unmodified	_WRRPWLSWNCR_					0	0	0			REV__CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant	REV__CSF2RB|p.S568Afs*130|1|0.47|ENSG00000100368|chr22:36937504-36937504|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	780.39501953125	2	780.393679	1558.7728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.261	1	30.261	29.761	30.761	0								0	0	0	0.95686	1	11092	11092		2.7352	0.23671	1		+		38426	10298	24677	24801	36982	36982					0.015769308192830067
WRRQWRPRRFS	11	Unmodified	_WRRQWRPRRFS_					0	0	0		ENSG00000089692|ENST00000203629|LAG3	ENSG00000089692|ENST00000203629|LAG3	ENSG00000089692|ENST00000203629|LAG3	MSMS	HCT116MG_D190212_S3	3	815.950439453125	2	815.950541	1629.88653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.251	1	48.935	48.435	49.435	-0.31596								0	0	0	0.96208	1	18542	18542		0	0	1				38427	1530	24678	24802	36983	36983					0.09678161976512456
WRRRELWFWWR	11	Unmodified	_WRRRELWFWWR_					0	0	0		ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MSMS	HCT116MG_D190212_S1	1	888.9735107421875	2	888.970942	1775.92733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.844	1	40.844	40.344	41.344	0								0	0	0	0.96208	1	15363	15363		0	0	1				38428	6790	24679	24803	36984	36984					0.07040503296138922
WRRRIARKRR	10	Unmodified	_WRRRIARKRR_					0	0	0			REV__IQSEC2|p.E127Ifs*81|1|0.27|ENSG00000124313|chrX:53320746-53320747|-/CGATT|frameshift_variant	REV__IQSEC2|p.E127Ifs*81|1|0.27|ENSG00000124313|chrX:53320746-53320747|-/CGATT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	727.4641723632812	2	727.463619	1452.91268	0.68829	0.00050071	0.23825	0.00017332	0.92654	0.00067403	727.4636410083182	60.948	2.6878	60.948	60.129	62.817	0					165	51	4	0	0	0	0.89372	2	23813	23341;23813		0	0	1	84836000	+		38429	16905	24680	24804	36985;36986	36986					0.20434475938645846
WRRRKPARWRR	11	Unmodified	_WRRRKPARWRR_					0	0	0		ENST00000545932.5_1_12:108956369-108956426:+|nuORF	ENST00000545932.5_1_12:108956369-108956426:+|nuORF	ENST00000545932.5_1_12:108956369-108956426:+|nuORF	MSMS	HCT116MG_D190212_S4	4	812.6552734375	2	812.487625	1622.9607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.388	1	52.046	51.546	52.546	-0.34206								0	0	0	0.96208	1	19528	19528		0	0	1				38430	8724	24681	24805	36987	36987					0.17413549858702027
WRRRQRRR	8	Unmodified	_WRRRQRRR_					0	0	0		ENST00000370332.5_1_1:92949124-92949509:-|nuORF	ENST00000370332.5_1_1:92949124-92949509:-|nuORF	ENST00000370332.5_1_1:92949124-92949509:-|nuORF	MSMS	HCT116MG_D190212_S1	1	635.3843994140625	2	635.384837	1268.75512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.467	1	61.467	60.967	61.967	0								0	0	0	0.8837	1	23717	23717		0.69038	0	1				38431	7424	24682	24806	36988	36988					0.1314939639930799
WRRRRQARRRK	11	Unmodified	_WRRRRQARRRK_					0	0	0			REV__CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant	REV__CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	542.6712036132812	3	542.336713	1623.98831	0.48611	0.00026363	-0.60463	-0.00032791	-0.11852	-6.428E-05	542.3362516726132	55.412	1.372	55.121	54.299	55.671	-0.2918					55	25	3	0	0	0	0.74191	3	20884	20884;20905;21157		0	0	1	5358900	+		38432	10102	24683	24807	36989;36990;36991	36989					0.20127453118925587
WRRRRQARRRK	11	Unmodified	_WRRRRQARRRK_					0	0	0			REV__CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant	REV__CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	542.3358764648438	3	542.336713	1623.98831	0.48611	0.00026363	-0.60463	-0.00032791	-0.11852	-6.428E-05	542.3362516726132	55.412	1.372	55.121	54.299	55.671	-0.2918					55	25	3	0	0	0	0.36631	1	21157	21157		0	0	1	5358900	+		38433	10102	24683	24807	36992	36992					0.20127453118925587
WRRRRQARRRK	11	Unmodified	_WRRRRQARRRK_					0	0	0			REV__CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant	REV__CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	542.336713	1623.98831	0.50521	0.000274	-0.74846	-0.00040592	-0.24324	-0.00013192	542.3362219358909	55.487	1.8437	55.301	54.051	55.895	-0.18565	0.075328	3.9795E-05	NaN	0	141	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	817500000	+		38434	10102	24683	24807							0.20127453118925587
WRRRRQARRRK	11	Unmodified	_WRRRRQARRRK_					0	0	0			REV__CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant	REV__CBX4|p.E288Rfs*117|1|0.35|ENSG00000141582|chr17:79834780-79834780|C/-|frameshift_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		3	542.336713	1623.98831	0.59126	0.00032066	-0.85284	-0.00046253	-0.26158	-0.00014186	542.3361176447455	55.568	1.3546	55.256	54.256	55.61	-0.312	0.030041	-0.00013003	NaN	0	78	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48837000	+		38435	10102	24683	24807							0.20127453118925587
WRRRRTQRR	9	Unmodified	_WRRRRTQRR_					0	0	0		ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	685.909423828125	2	685.908676	1369.8028	0.80795	0.00055418	0.056816	3.8971E-05	0.86476	0.00059315	685.9085834048054	52.768	3.4932	52.768	51.704	55.197	0					221	67	5	0	0	0	0.76814	1	20129	20129		0.52476	0.52476	1	1729399999.9999998			38436	7962	24684	24808	36993	36993					0.1326905059947876
WRRRRTQRR	9	Unmodified	_WRRRRTQRR_					0	0	0		ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	686.4107055664062	2	685.908676	1369.8028	0.95611	0.0006558	-0.2587	-0.00017745	0.6974	0.00047836	685.9082461890223	53.934	1.9847	53.635	52.307	54.291	-0.29946					74	37	4	0	0	0	0.76909	1	20432	20432		0.45834	0.45834	1	9097900			38437	7962	24684	24808	36994	36994					0.1326905059947876
WRRRRTQRR	9	Unmodified	_WRRRRTQRR_					0	0	0		ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	686.4112548828125	2	685.908676	1369.8028	0.71889	0.00049309	-0.12218	-8.3801E-05	0.59671	0.00040929	685.9087127833797	52.383	0.9869	52.04	51.728	52.715	-0.34259					37	18	3	0	0	0	0.76814	3	19500	19500;19737;19753		0.52476	0.52476	1	5519400			38438	7962	24684	24808	36995;36996;36997	36995					0.1326905059947876
WRRRRTQRR	9	Unmodified	_WRRRRTQRR_					0	0	0		ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	685.908676	1369.8028	0.67772	0.00046485	0.10882	7.4642E-05	0.78654	0.00053949	685.9085315224376	51.755	0.41525	51.755	51.5	51.916	0	-0.14283	0.00024127	NaN	0.52476	20	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96024000			38439	7962	24684	24808							0.1326905059947876
WRRRRTQRR	9	Unmodified	_WRRRRTQRR_					0	0	0		ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	685.908676	1369.8028	0.95611	0.0006558	-0.2587	-0.00017745	0.6974	0.00047836	685.9082461890223	53.934	1.9847	53.635	52.307	54.291	-0.29946	-0.0046181	-0.00026603	NaN	0.45834	74	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9097900			38440	7962	24684	24808							0.1326905059947876
WRRRRTQRR	9	Unmodified	_WRRRRTQRR_					0	0	0		ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	685.908676	1369.8028	0.71889	0.00049309	-0.12218	-8.3801E-05	0.59671	0.00040929	685.9087127833797	52.383	0.9869	52.04	51.728	52.715	-0.34259	0.14283	-7.5619E-05	NaN	0.52476	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5519400			38441	7962	24684	24808							0.1326905059947876
WRRRRTQRR	9	Unmodified	_WRRRRTQRR_					0	0	0		ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	685.908676	1369.8028	0.76776	0.00052662	-0.027715	-1.901E-05	0.74005	0.00050761	685.9085004865625	53.973	2.0832	53.644	52.624	54.708	-0.32923	0.0046181	5.0836E-05	NaN	0.45834	121	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43489000			38442	7962	24684	24808							0.1326905059947876
WRRRRWRRRL	10	Unmodified	_WRRRRWRRRL_					0	0	0		ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	532.9934692382812	3	532.994287	1595.96103	0.45144	0.00024061	-3.3333	-0.0017766	-2.8819	-0.001536	532.9928009846465	53.281	0.3096	53.281	53.204	53.514	0					6	5	2	0	0	0	0.8938	1	20424	20424		0.13989	0.13989	1	14940000			38443	9071	24685	24809	36998	36998					0.1868896957855668
WRRRVYQKRF	10	Unmodified	_WRRRVYQKRF_					0	0	0			REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF	REV__ENST00000559731.5_1_15:64200721-64208786:-|nuORF	MSMS	HCT116MG_D190212_S1	1	498.95831298828125	3	498.956616	1493.84802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.052	1	13.052	12.552	13.552	0								0	0	0	0.97045	1	4221	4221		0.15932	0.064481	1		+		38444	10577	24686	24810	36999	36999					0.12084856341994055
WRRSMWRWRTR	11	Unmodified	_WRRSMWRWRTR_					0	0	0		ENST00000330978.3_1_16:29465045-29465621:-|nuORF;ENST00000568556.1_3_16:29458291-29465582:-|nuORF	ENST00000330978.3_1_16:29465045-29465621:-|nuORF	ENST00000330978.3_1_16:29465045-29465621:-|nuORF	MSMS	HCT116MG_D190212_S2	2	559.28955078125	3	559.632027	1675.87425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.343	1	51.165	50.665	51.665	-0.17868								0	0	0	0.96208	1	19697	19697		0	0	1				38445	7158	24687	24811	37000	37000					0.06334802241804027
WRRWCWRWPW	10	Unmodified	_WRRWCWRWPW_					0	0	0		nc|ENSG00000127252|Q9HDD0-2|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	nc|ENSG00000127252|Q9HDD0-2|PLAAT1	MSMS	HCT116MG_D190212_S4	4	809.3959350585938	2	809.393482	1616.77241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.266	1	49.907	49.407	50.407	-0.35878								0	0	0	0.96377	1	18670	18670		1.6526	0.32309	1				38446	9449	24688	24812	37001	37001					-0.011304441099355245
WRRWQVERRRW	11	Unmodified	_WRRWQVERRRW_					0	0	0		ENST00000508390.1_1_3:131245302-131245881:+|nuORF	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	MSMS	HCT116MG_D190212_S2	2	572.0042724609375	3	571.981824	1712.92364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.543	1	48.4	47.9	48.9	-0.1437								0	0	0	0.96208	1	18550	18550		0	0	1				38447	8477	24689	24813	37002	37002					0.09569833522277804
WRRWRKRWRRR	11	Unmodified	_WRRWRKRWRRR_					0	0	0			REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MSMS	HCT116MG_D190212_S1	1	899.5307006835938	2	899.532898	1797.05124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.476	1	53.476	52.976	53.976	0								0	0	0	0.96208	1	20481	20481		0	0	1		+		38448	14625	24690	24814	37003	37003					0.1846001890696698
WRRWRPWFRL	10	Unmodified	_WRRWRPWFRL_					0	0	0		ENST00000532024.1_1_11:70118214-70118385:+|nuORF	ENST00000532024.1_1_11:70118214-70118385:+|nuORF	ENST00000532024.1_1_11:70118214-70118385:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	390.8910827636719	4	390.471824	1557.85819	-0.031884	-1.245E-05	0.65977	0.00025762	0.62788	0.00024517	390.7228403431544	14.676	0.20802	14.676	14.598	14.806	0					5	3	2	0	0	0	0.31203	1	4848	4848		0.15932	0.064481	1	4013400			38449	8629	24691	24815	37004	37004					0.10157464067242472
WRRWWLWTPQL	11	Unmodified	_WRRWWLWTPQL_					0	0	0		ENST00000308064.6_1_11:45673544-45686758:-|nuORF;ENST00000531322.1_1_11:45673541-45686758:-|nuORF	ENST00000308064.6_1_11:45673544-45686758:-|nuORF	ENST00000308064.6_1_11:45673544-45686758:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	815.8587646484375	2	814.43587	1626.85719	0.88165	0.00071805	-0.045109	-3.6739E-05	0.83654	0.00068131	814.4356423114416	27.775	0.46687	27.775	27.49	27.956	0					26	8	5	0	0	0	0.74191	1	10065	10065		0.30703	0.03801	1	71127000			38450	7036	24692	24816	37005	37005					0.06883204907671825
WRWLRRQELLL	11	Unmodified	_WRWLRRQELLL_					0	0	0			REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF	REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF	MSMS	HCT116MG_D190212_S4	4	784.9622802734375	2	784.962252	1567.90995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.261	1	43.887	43.387	44.387	-0.37373								0	0	0	0.96208	1	16300	16300		0	0	1		+		38451	16074	24693	24817	37006	37006					0.14871162970507612
WRWRWRWRWLC	11	Unmodified	_WRWRWRWRWLC_					0	0	0		SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	895.4631958007812	2	895.459687	1788.90482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.483	1	27.483	26.983	27.983	0								0	0	0	0.96208	1	9974	9974		0	0	1				38452	18177	24694	24818	37007	37007					0.04192580626886411
WRWRWRWRWLC	11	Unmodified	_WRWRWRWRWLC_					0	0	0		SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	895.4639892578125	2	895.459687	1788.90482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.881	1	27.539	27.039	28.039	-0.34201								0	0	0	0.96149	1	10147	10147		0.30703	0.30703	1				38453	18177	24694	24818	37008	37008					0.04192580626886411
WRWRWRWRWLC	11	Unmodified	_WRWRWRWRWLC_					0	0	0		SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	SMPD1|p.G29Dfs*48|1|0.23|ENSG00000166311|chr11:6390678-6390678|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	895.4631958007812	2	895.459687	1788.90482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.025	1	27.699	27.199	28.199	-0.32523								0	0	0	0.96208	1	10059	10059		0	0	1				38454	18177	24694	24818	37009	37009					0.04192580626886411
WRYHKRVRRW	10	Unmodified	_WRYHKRVRRW_					0	0	0			REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF	REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF	MSMS	HCT116MG_D190212_S3	3	771.93994140625	2	771.936902	1541.85925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.653	1	51.342	50.842	51.842	-0.31166								0	0	0	0.96453	1	19508	19508		1.4819	0.15237	1		+		38455	15356	24695	24819	37010	37010					0.10999678436132854
WRYLWLPWLLW	11	Unmodified	_WRYLWLPWLLW_					0	0	0			REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF	MSMS	HCT116MG_D190212_S1	1	816.4131469726562	2	816.447914	1630.88128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.699	1	46.699	46.199	47.199	0								0	0	0	0.96208	1	17725	17725		0	0	1				38456	14613	24696	24820	37011	37011					0.09107045341352205
WRYRQRKFEK	10	Unmodified	_WRYRQRKFEK_					0	0	0		ENST00000563686.5_1_18:52942938-53070719:-|nuORF	ENST00000563686.5_1_18:52942938-53070719:-|nuORF	ENST00000563686.5_1_18:52942938-53070719:-|nuORF	MSMS	HCT116MG_D190212_S3	3	748.6737670898438	2	748.915301	1495.81605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.78	1	52.474	51.974	52.974	-0.30639								0	0	0	0.94339	1	19961	19961		6.2058	0.9089	1				38457	8837	24697	24821	37012	37012					0.08797443868206756
WRYYGDSCYGF	11	Unmodified	_WRYYGDSCYGF_					0	0	0		ENSG00000165682|ENST00000298527|CLEC1B;CLEC1B|p.C216Lfs*12|1|0.04|ENSG00000165682|chr12:9993186-9993187|-/TGGAGTTATTTTTA|frameshift_variant;nc|ENSG00000165682|Q9P126-2|CLEC1B	ENSG00000165682|ENST00000298527|CLEC1B	ENSG00000165682|ENST00000298527|CLEC1B	MSMS	HCT116MG_D190212_S1	1	708.7860107421875	2	708.787512	1415.56047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.739	1	44.739	44.239	45.239	0								0	0	0	0.95636	1	16933	16933		2.9952	0.26005	1				38458	476	24698	24822	37013	37013					-0.13068625102050646
WRYYREEPFA	10	Unmodified	_WRYYREEPFA_					0	0	0			REV__ENST00000532450.5_1_11:64812392-64813763:-|nuORF	REV__ENST00000532450.5_1_11:64812392-64813763:-|nuORF	MSMS	HCT116MG_D190212_S1	1	708.8404541015625	2	708.838394	1415.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.076	1	14.076	13.576	14.576	0								0	0	0	0.96937	1	4589	4589		0.40072	0	1		+		38459	16323	24699	24823	37014	37014					-0.028970106879569357
WSASKKERY	9	Unmodified	_WSASKKERY_					0	0	0			REV__LILRB2|p.P428Hfs*35|1|0.41|ENSG00000131042|chr19:54277915-54277915|G/-|frameshift_variant	REV__LILRB2|p.P428Hfs*35|1|0.41|ENSG00000131042|chr19:54277915-54277915|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	579.3052978515625	2	577.80128	1153.58801	0.28524	0.00016481	0.15949	9.2153E-05	0.44472	0.00025696	577.8013516172548	32.15	0.41659	32.15	31.961	32.378	0					21	7	4	0	0	0	0.61789	1	11941	11941		14.838	0.93222	1	78370000	+		38460	11952	24700	24824	37015	37015					0.017356462205270873
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	HCT116MG_D190212_S1	1	577.2694091796875	2	577.269281	1152.52401	0.36946	0.00021328	0.29702	0.00017146	0.66649	0.00038474	577.2693715296476	47.629	0.34821	47.629	47.441	47.789	0					19	6	4	0	0	0	0.019399	1	18099	18099		97.075	36.685	1	228720000			38461	2487	24701	24825	37016	37016					-0.04615133936431448
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	HCT116MG_D190212_S2	2	577.269775390625	2	577.269281	1152.52401	0.74039	0.0004274	0.2391	0.00013802	0.97949	0.00056543	577.2693763971944	47.741	0.46461	47.608	47.377	47.841	-0.13281					26	8	5	0	0	0	0.011506	1	18199	18199		109.63	49.24	1	1226400000			38462	2487	24701	24825	37017	37017					-0.04615133936431448
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	HCT116MG_D190212_S2	2	1153.532958984375	1	1153.53129	1152.52401	0.81898	0.00094472	0.10428	0.0001203	0.92326	0.001065	1153.5313267789252	47.716	0.36189	47.583	47.428	47.79	-0.13282					13	6	3	0	0	0	0.019399	1	18221	18221		97.075	57.117	1	69103000			38463	2487	24701	24825	37018	37018					-0.04615133936431448
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	HCT116MG_D190212_S3	3	577.2699584960938	2	577.269281	1152.52401	0.31072	0.00017937	0.27369	0.00015799	0.58441	0.00033736	577.2693943230415	48.013	0.41718	47.697	47.514	47.932	-0.31596					18	7	3	0	0	0	0.023611	1	18033	18033		92.822	40.554	1	45326000			38464	2487	24701	24825	37019	37019					-0.04615133936431448
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	HCT116MG_D190212_S4	4	577.2703247070312	2	577.269281	1152.52401	0.37049	0.00021387	0.58781	0.00033932	0.9583	0.0005532	577.2697882760222	48.018	0.30964	47.649	47.468	47.778	-0.36907					10	5	3	0	0	0	0.1037	1	17782	17782		57.471	17.514	1	6050700			38465	2487	24701	24825	37020	37020					-0.04615133936431448
WSDTTFHYGQL	11	Unmodified	_WSDTTFHYGQL_					0	0	0			REV__ENTPD1|p.A431T|1|0.33|ENSG00000138185|chr10:95864826-95864826|G/A|missense_variant	REV__ENTPD1|p.A431T|1|0.33|ENSG00000138185|chr10:95864826-95864826|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	677.8049926757812	2	677.806759	1353.59897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.989	1	28.989	28.489	29.489	0								0	0	0	0.26933	1	10578	10578		63.227	17.488	1		+		38466	16794	24702	24826	37021	37021					-0.06368996195874388
WSGPGGGP	8	Unmodified	_WSGPGGGP_					0	0	0		ENST00000412979.1_1_2:128227618-128227845:-|nuORF	ENST00000412979.1_1_2:128227618-128227845:-|nuORF	ENST00000412979.1_1_2:128227618-128227845:-|nuORF	MSMS	HCT116MG_D190212_S1	1	357.66400146484375	2	357.663921	713.313289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.855	1	31.855	31.355	32.355	0								0	0	0	0.8837	1	11735	11735		5.7604	0	1				38467	7739	24703	24827	37022	37022					-0.05483546467803535
WSGRGPSRW	9	Unmodified	_WSGRGPSRW_					0	0	0			REV__nc|ENSG00000165806|P55210-3|CASP7	REV__nc|ENSG00000165806|P55210-3|CASP7	MULTI-MSMS	HCT116MG_D190212_S4	4	544.7721557617188	2	544.772857	1087.53116	0.4841	0.00026372	-1.5079	-0.00082145	-1.0238	-0.00055773	544.7721064508107	29.323	1.091	28.974	28.41	29.501	-0.34921					32	20	3	0	0	0	0.52876	1	10496	10496		15.248	0.41021	1	5480100	+		38468	13077	24704	24828	37023	37023					-0.009103565453415285
WSHTSTEDPQ	10	Unmodified	_WSHTSTEDPQ_					0	0	0		KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant;KIF1C|p.K1057Sfs*31|1|0.14|ENSG00000129250|chr17:5024005-5024005|A/-|frameshift_variant;KIF1C|p.Y1081Ifs*15|1|0.28|ENSG00000129250|chr17:5024072-5024073|-/C|frameshift_variant;ENSG00000129250|ENST00000320785|KIF1C	KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	KIF1C|p.L962Cfs*126|1|0.31|ENSG00000129250|chr17:5023717-5023717|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	594.2523803710938	2	594.251817	1186.48908	0.97037	0.00057665	0.13976	8.3054E-05	1.1101	0.0006597	594.2516240858195	23.979	0.20806	23.721	23.573	23.781	-0.25816					5	3	2	0	0	0	0.75066	1	8446	8446		16.149	2.2431	1	1884900			38469	3026	24705	24829	37024	37024					-0.09670421535042806
WSIPYKREESL	11	Unmodified	_WSIPYKREESL_					0	0	0		USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant;USP24|p.F796Lfs*4|1|0.37|ENSG00000162402|chr1:55144178-55144178|A/-|frameshift_variant;USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant;ENSG00000162402|ENST00000294383|USP24;USP24|p.I478Ffs*12|1|0.09|ENSG00000162402|chr1:55156962-55156962|T/-|frameshift_variant	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	704.3645629882812	2	704.366984	1406.71942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.342	1	54.342	53.842	54.842	0								0	0	0	0.94385	1	20836	20836		9.544	0.79857	1				38470	4517	24706	24830	37025	37025					0.032324117977623246
WSIPYKREESL	11	Unmodified	_WSIPYKREESL_					0	0	0		USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant;USP24|p.F796Lfs*4|1|0.37|ENSG00000162402|chr1:55144178-55144178|A/-|frameshift_variant;USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant;ENSG00000162402|ENST00000294383|USP24;USP24|p.I478Ffs*12|1|0.09|ENSG00000162402|chr1:55156962-55156962|T/-|frameshift_variant	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	704.3657836914062	2	704.366984	1406.71942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.702	1	41.326	40.826	41.826	-0.37637								0	0	0	0.9266	1	15302	15302		16.566	5.0712	1				38471	4517	24706	24830	37026	37026					0.032324117977623246
WSIPYKREESL	11	Unmodified	_WSIPYKREESL_					0	0	0		USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant;USP24|p.F796Lfs*4|1|0.37|ENSG00000162402|chr1:55144178-55144178|A/-|frameshift_variant;USP24|p.Y1733Tfs*10|1|0.35|ENSG00000162402|chr1:55100913-55100913|A/-|frameshift_variant;ENSG00000162402|ENST00000294383|USP24;USP24|p.I478Ffs*12|1|0.09|ENSG00000162402|chr1:55156962-55156962|T/-|frameshift_variant	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	USP24|p.E797*|1|0.32|ENSG00000162402|chr1:55144177-55144178|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	704.0309448242188	2	704.366984	1406.71942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.406	1	57.112	56.612	57.612	-0.29465								0	0	0	0.94145	1	21547	21547		10.8	2.644	1				38472	4517	24706	24830	37027	37027					0.032324117977623246
WSPMGCPRRW	10	Unmodified	_WSPMGCPRRW_					0	0	0			REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF	REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF	MSMS	HCT116MG_D190212_S2	2	638.2959594726562	2	638.297327	1274.5801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.075	1	62.946	62.446	63.446	-0.12924								0	0	0	0.96937	1	24455	24455		0.40072	0.050084	1		+		38473	15670	24707	24831	37028	37028					-0.04620527572251376
WSPRRRRRRTA	11	Unmodified	_WSPRRRRRRTA_					0	0	0		ENST00000321892.8_1_17:65822219-65850151:+|nuORF	ENST00000321892.8_1_17:65822219-65850151:+|nuORF	ENST00000321892.8_1_17:65822219-65850151:+|nuORF	MSMS	HCT116MG_D190212_S2	2	499.96246337890625	3	499.962653	1496.86613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.662	1	54.472	53.972	54.972	-0.1894								0	0	0	0.95778	1	21051	21051		2.2527	0.51045	1				38474	7105	24708	24832	37029	37029					0.13756991316722633
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S1	1	684.7941284179688	2	684.791444	1367.56833	1.0044	0.00068778	0.18029	0.00012346	1.1847	0.00081124	685.2925669489914	28.402	0.26542	28.402	28.216	28.482	0					10	4	3	0	0	0	0.017681	1	10356	10356		155.95	117.78	1	19144000			38475	4179	24709	24833	37030	37030					-0.10074729790244419
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S1	1	456.86334228515625	3	456.863388	1367.56833	0.36189	0.00016533	0.0011402	5.209E-07	0.36303	0.00016585	457.1977472076358	28.402	0.21327	28.402	28.268	28.482	0					5	3	2	0	0	0	0.44269	1	10358	10358		39.213	39.213	1	15004000			38476	4179	24709	24833	37031	37031					-0.10074729790244419
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	HCT116MG_D190212_S2	2	685.4439086914062	2	684.791444	1367.56833	0.38984	0.00026696	0.34599	0.00023693	0.73584	0.00050389	684.7914345515057	28.795	0.25415	28.479	28.352	28.606	-0.31613					6	4	2	0	0	0	0.0085029	2	10516	10516;10545		179.28	144.12	1	48256000			38477	4179	24709	24833	37032;37033	37032					-0.10074729790244419
WSRVEYQCQSY	11	Unmodified	_WSRVEYQCQSY_					0	0	0		nc|ENSG00000134365|Q92496-2|CFHR4;ENSG00000134365|ENST00000608469|CFHR4	nc|ENSG00000134365|Q92496-2|CFHR4	nc|ENSG00000134365|Q92496-2|CFHR4	MULTI-MSMS	HCT116MG_D190212_S1	1	483.5468444824219	3	483.546959	1447.61905	0.48851	0.00023622	-0.32238	-0.00015588	0.16613	8.0334E-05	483.54664192638876	28.668	0.21154	28.668	28.535	28.746	0					6	3	2	0	0	0	0.74191	1	10478	10478		2.084	0.75432	1	9890200			38478	3283	24710	24834	37034	37034					-0.08685568527539544
WSRVEYQCQSY	11	Unmodified	_WSRVEYQCQSY_					0	0	0		nc|ENSG00000134365|Q92496-2|CFHR4;ENSG00000134365|ENST00000608469|CFHR4	nc|ENSG00000134365|Q92496-2|CFHR4	nc|ENSG00000134365|Q92496-2|CFHR4	MULTI-MATCH	HCT116MG_D190212_S2	2		3	483.546959	1447.61905	0.14249	6.8901E-05	-0.20337	-9.8341E-05	-0.060882	-2.9439E-05	483.5467268760638	29.036	0.15496	28.72	28.606	28.761	-0.31613	0.026006	0.00013321	NaN	2.084	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22465000			38479	3283	24710	24834							-0.08685568527539544
WSWPRPRHRER	11	Unmodified	_WSWPRPRHRER_					0	0	0		ENST00000571698.2_2_17:44249328-44271124:-|nuORF;ENST00000574590.6_2_17:44249328-44301084:-|nuORF;ENST00000262419.10_2_17:44249328-44269907:-|nuORF	ENST00000571698.2_2_17:44249328-44271124:-|nuORF	ENST00000571698.2_2_17:44249328-44271124:-|nuORF	MSMS	HCT116MG_D190212_S2	2	521.6113891601562	3	521.611508	1561.8127	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3199	1	8.0888	7.5888	8.5888	-0.23116								0	0	0	0.9619	1	2600	2600		0.094841	0	1				38480	6865	24711	24835	37035	37035					0.05426193814196267
WTAPSASPLCP	11	Unmodified	_WTAPSASPLCP_					0	0	0			REV__PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant	REV__PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	377.1817626953125	3	377.18307	1128.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.947	1	27.947	27.447	28.447	0								0	0	0	0.95665	1	10162	10162		2.8433	0.10809	1		+		38481	17422	24712	24836	37036	37036					-0.03174207154074793
WTCRPHCNRT	10	Unmodified	_WTCRPHCNRT_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	HCT116MG_D190212_S1	1	637.3311157226562	2	637.287491	1272.56043	0.70838	0.00045144	-1.8032	-0.0011492	-1.0948	-0.00069772	637.2865653310187	16.655	0.31226	16.655	16.421	16.733	0					7	5	2	0	0	0	0.68623	1	5638	5638		21.537	3.3906	1	2703800	+		38482	14280	24713	24837	37037	37037					-0.06494903583029554
WTDDQKDYG	9	Unmodified	_WTDDQKDYG_					0	0	0			REV__ENSG00000172352|ENST00000382407|CDY1B	REV__ENSG00000172352|ENST00000382407|CDY1B	MULTI-MSMS	HCT116MG_D190212_S1	1	564.2359008789062	2	564.235635	1126.45672	-0.52092	-0.00029392	0.35197	0.00019859	-0.16896	-9.5332E-05	564.2360236882326	38.253	0.26055	38.253	38.071	38.332	0					7	4	2	0	0	0	0.67781	1	14345	14345		6.7232	1.4263	1	9291000	+		38483	11901	24714	24838	37038	37038					-0.1014520893804729
WTEMNTIVY	9	Unmodified	_WTEMNTIVY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant;CHD8|p.V1538*|1|0.4|ENSG00000100888|chr14:21400267-21400267|T/-|frameshift_variant	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	HCT116MG_D190212_S2	2	578.771484375	2	578.7708	1155.52705	0.62352	0.00036087	-0.39685	-0.00022968	0.22667	0.00013119	578.7707319852468	52.285	0.25848	52.098	51.935	52.193	-0.18726					7	4	2	0	0	0	0.063511	1	20098	20098		68.081	42.681	1	22804000			38484	432	24715	24839	37039	37039					-0.044496268739294464
WTEMNTIVY	9	Unmodified	_WTEMNTIVY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;CHD8|p.N2371Kfs*2|2|0.24|ENSG00000100888|chr14:21391016-21391017|-/T|frameshift_variant;CHD8|p.N2371Ifs*6|1|0.32|ENSG00000100888|chr14:21391017-21391017|T/-|frameshift_variant;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.D1870Rfs*3|1|0.3|ENSG00000100888|chr14:21394187-21394188|-/G|frameshift_variant;CHD8|p.L1905Ffs*30|2|0.29|ENSG00000100888|chr14:21394082-21394082|G/-|frameshift_variant;CHD8|p.I1108Nfs*7|1|0.24|ENSG00000100888|chr14:21403648-21403649|-/T|frameshift_variant;CHD8|p.V1538*|1|0.4|ENSG00000100888|chr14:21400267-21400267|T/-|frameshift_variant	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	HCT116MG_D190212_S2	2	1156.5341796875	1	1156.53432	1155.52705	0.66896	0.00077368	-0.19304	-0.00022326	0.47592	0.00055042	1156.5340371144114	52.303	0.30952	52.116	51.935	52.244	-0.18725					9	5	2	0	0	0	0.01389	1	20120	20120		103.75	74.667	1	13945000			38485	432	24715	24839	37040	37040					-0.044496268739294464
WTEPRSLKMR	10	Unmodified	_WTEPRSLKMR_					0	0	0			REV__ENST00000557627.1_1_14:20869071-20871634:-|nuORF	REV__ENST00000557627.1_1_14:20869071-20871634:-|nuORF	MSMS	HCT116MG_D190212_S2	2	435.2354431152344	3	435.236168	1302.68668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.142	1	13.83	13.33	14.33	-0.31202								0	0	0	0.97045	1	4617	4617		0.15932	0	1		+		38486	11895	24716	24840	37041	37041					0.04743926193918924
WTEWNYFDKHL	11	Unmodified	_WTEWNYFDKHL_					0	0	0		ENST00000540952.5_1_22:38982050-39003412:-|nuORF;nc|ENSG00000184949|F5H4B4-2|FAM227A;ENSG00000184949|ENST00000535113|FAM227A	ENST00000540952.5_1_22:38982050-39003412:-|nuORF	ENST00000540952.5_1_22:38982050-39003412:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	513.5735473632812	3	513.573614	1537.69901	0.54709	0.00028097	-0.24835	-0.00012754	0.29874	0.00015343	513.5732360744779	35.833	0.20532	35.697	35.547	35.752	-0.13623					6	3	2	0	0	0	0.74191	1	13402	13402		4.1166	1.8639	1	21907000			38487	5791	24717	24841	37042	37042					-0.04832758862062292
WTKLLRYPGI	10	Unmodified	_WTKLLRYPGI_					0	0	0			REV__ENST00000521560.1_2_8:99118529-99129303:-|nuORF	REV__ENST00000521560.1_2_8:99118529-99129303:-|nuORF	MSMS	HCT116MG_D190212_S1	1	416.2491149902344	3	416.248403	1245.72338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.644	1	35.644	35.144	36.144	0								0	0	0	0.96337	1	13266	13266		1.7423	0	1		+		38488	16239	24718	24842	37043	37043					0.11034546082123597
WTLPRRSGP	9	Unmodified	_WTLPRRSGP_					0	0	0		ENST00000247956.10_1_19:9267962-9268034:+|nuORF	ENST00000247956.10_1_19:9267962-9268034:+|nuORF	ENST00000247956.10_1_19:9267962-9268034:+|nuORF	MSMS	HCT116MG_D190212_S4	4	357.2018127441406	3	357.201564	1068.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.641	1	34.255	33.755	34.755	-0.38558								0	0	0	0.7689	1	12657	12657		2.7352	0	1				38489	6792	24719	24843	37044	37044					0.05131387148594513
WTLRRPTRW	9	Unmodified	_WTLRRPTRW_					0	0	0		ENST00000461377.5_1_7:45109515-45113126:+|nuORF	ENST00000461377.5_1_7:45109515-45113126:+|nuORF	ENST00000461377.5_1_7:45109515-45113126:+|nuORF	MSMS	HCT116MG_D190212_S1	1	636.3597412109375	2	636.359631	1270.70471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.321	1	60.321	59.821	60.821	0								0	0	0	0.76967	1	23250	23250		2.0598	0	1				38490	8053	24720	24844	37045	37045					0.08018429230924085
WTRELALGPP	10	Unmodified	_WTRELALGPP_					0	0	0			REV__ENSG00000274211|ENST00000612932|SOCS7	REV__ENSG00000274211|ENST00000612932|SOCS7	MSMS	HCT116MG_D190212_S2	2	570.312255859375	2	570.314023	1138.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.067	1	31.837	31.337	32.337	-0.23009								0	0	0	0.93854	1	11852	11852		7.2892	0	1		+		38491	14452	24721	24845	37046	37046					0.04973120742943138
WTSSSTVLSR	10	Unmodified	_WTSSSTVLSR_					0	0	0			REV__ENST00000568973.5_1_16:30435747-30440477:-|nuORF	REV__ENST00000568973.5_1_16:30435747-30440477:-|nuORF	MSMS	HCT116MG_D190212_S1	1	375.19659423828125	3	375.196256	1122.56694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.801	1	15.801	15.301	16.301	0								0	0	0	0.93466	1	5275	5275		4.7159	0.18705	1		+		38492	16564	24722	24846	37047	37047					0.010556361209864917
WTVYYMLEVYL	11	Unmodified	_WTVYYMLEVYL_					0	0	0		ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	MULTI-MSMS	HCT116MG_D190212_S4	4	740.365966796875	2	740.365064	1478.71558	0.8351	0.00061828	-0.020989	-1.554E-05	0.81411	0.00060274	740.3651021050288	39.198	0.43748	38.818	38.49	38.928	-0.38055					14	9	2	0	0	0	0.74191	1	14417	14417		2.7352	0	1	2994000			38493	4455	24723	24847	37048	37048					-0.004633940202893427
WVASSPMW	8	Unmodified	_WVASSPMW_					0	0	0			REV__nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	REV__nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	MSMS	HCT116MG_D190212_S1	1	482.2232360839844	2	482.223288	962.432024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.776	1	61.776	61.276	62.276	0								0	0	0	0.8837	1	23842	23842		0.79363	0	1		+		38494	17147	24724	24848	37049	37049					-0.05069515554453119
WVAVPWSPL	9	Unmodified	_WVAVPWSPL_					0	0	0			REV__ENST00000361717.3_1_4:113199465-113199531:-|nuORF	REV__ENST00000361717.3_1_4:113199465-113199531:-|nuORF	MSMS	HCT116MG_D190212_S2	2	352.196533203125	3	352.195527	1053.56475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.263	1	20.88	20.38	21.38	-0.38288								0	0	0	0.76862	1	7474	7474		5.7319	0	1		+		38495	15099	24725	24849	37050	37050					0.04011252173859248
WVDETLSSV	9	Unmodified	_WVDETLSSV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	HCT116MG_D190212_S2	2	1035.456298828125	1	1035.49932	1034.49204	0.69685	0.00072159	0.34787	0.00036022	1.0447	0.0010818	1035.4996590412015	47.346	0.25869	47.224	47.026	47.285	-0.12175					7	4	2	0	0	0	0.071351	2	18045	18045;18064		64.236	20.464	1	14179000			38496	1937	24726	24850	37051;37052	37051					-0.023825464102401384
WVDETLSSV	9	Unmodified	_WVDETLSSV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5;UBR5|p.F2571Lfs*4|2|0.31|ENSG00000104517|chr8:102262044-102262044|A/-|frameshift_variant;UBR5|p.K2120Rfs*13|1|0.24|ENSG00000104517|chr8:102277121-102277122|TT/-|frameshift_variant;UBR5|p.E2121Rfs*13|1|0.28|ENSG00000104517|chr8:102277120-102277121|-/T|frameshift_variant;UBR5|p.E2121Kfs*28|1|0.39|ENSG00000104517|chr8:102277121-102277121|T/-|frameshift_variant;UBR5|p.I1021*|1|0.41|ENSG00000104517|chr8:102300046-102300046|G/-|frameshift_variant;UBR5|p.I1021Hfs*5|1|0.23|ENSG00000104517|chr8:102300045-102300046|-/G|frameshift_variant;UBR5|p.A1046Rfs*49|1|0.21|ENSG00000104517|chr8:102299518-102299519|-/G|frameshift_variant	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.81884765625	2	518.253297	1034.49204	0.40576	0.00021029	0.056831	2.9453E-05	0.4626	0.00023974	518.2532488991046	47.315	0.31025	47.194	47.026	47.336	-0.12175					9	5	2	0	0	0	0.21838	1	18033	18033		20.454	12.543	1	23828000			38497	1937	24726	24850	37053	37053					-0.023825464102401384
WVDPYEVSY	9	Unmodified	_WVDPYEVSY_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	HCT116MG_D190212_S2	2	1157.515625	1	1157.51497	1156.50769	0.46946	0.00054341	-0.13642	-0.00015791	0.33304	0.0003855	1157.5150396682463	51.575	0.25734	51.391	51.218	51.475	-0.18368					10	4	3	0	0	0	0.023611	1	19796	19796		92.822	30.249	1	30176000			38498	3245	24727	24851	37054	37054					-0.06430259893204493
WVDPYEVSY	9	Unmodified	_WVDPYEVSY_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1157.51497	1156.50769	0.45533	0.00052705	-0.45036	-0.0005213	0.0049727	5.756E-06	1157.5143605247486	51.72	0.20916	51.41	51.28	51.489	-0.30927	0.0095242	-0.00024376	NaN	92.822	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1941400			38499	3245	24727	24851							-0.06430259893204493
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	HCT116MG_D190212_S2	2	569.7747192382812	2	569.774396	1137.53424	0.39378	0.00022437	0.75296	0.00042901	1.1467	0.00065338	569.7748362891142	54.263	0.30762	54.073	53.945	54.252	-0.1894					9	5	2	0	0	0	0.027492	1	20903	20903		88.904	38.971	1	21265000			38500	2508	24728	24852	37055	37055					-0.029025710018458994
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	HCT116MG_D190212_S3	3	569.7745971679688	2	569.774396	1137.53424	0.40541	0.00023099	0.26581	0.00015145	0.67121	0.00038244	569.7744515339721	54.408	0.36605	54.112	53.929	54.295	-0.29587					13	6	3	0	0	0	0.027492	1	20623	20623		88.904	36.635	1	7984300			38501	2508	24728	24852	37056	37056					-0.029025710018458994
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	HCT116MG_D190212_S3	3	1138.5411376953125	1	1138.54152	1137.53424	0.37698	0.0004292	-0.041507	-4.7257E-05	0.33547	0.00038195	1138.54163860106	54.408	0.20919	54.112	53.981	54.19	-0.29587					8	3	3	0	0	0	0.063511	1	20631	20631		68.081	26.241	1	3817400			38502	2508	24728	24852	37057	37057					-0.029025710018458994
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	HCT116MG_D190212_S4	4	569.7747802734375	2	569.774396	1137.53424	0.63674	0.0003628	0.25653	0.00014616	0.89327	0.00050896	569.7743692798261	54.401	0.26059	54.078	53.984	54.244	-0.32349					5	4	2	0	0	0	0.12994	1	20359	20359		52.268	16.141	1	2903500			38503	2508	24728	24852	37058	37058					-0.029025710018458994
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1138.54152	1137.53424	0.58827	0.00066977	-1.1708	-0.001333	-0.58253	-0.00066324	1138.5404009633382	54.263	0.20564	54.073	53.945	54.15	-0.1894	-0.019265	-0.0010508	NaN	68.081	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13827000			38504	2508	24728	24852							-0.029025710018458994
WVEYYRRWERY	11	Unmodified	_WVEYYRRWERY_					0	0	0			REV__ENSG00000118017|ENST00000236709|A4GNT	REV__ENSG00000118017|ENST00000236709|A4GNT	MSMS	HCT116MG_D190212_S3	3	853.412841796875	2	853.415331	1704.81611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.228	1	38.927	38.427	39.427	-0.30137								0	0	0	0.96003	1	14558	14558		1.0715	1.0715	1		+		38505	11627	24729	24853	37059	37059					-0.008106009224547961
WVGEDSTY	8	Unmodified	_WVGEDSTY_					0	0	0		ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15;ENST00000475768.1_1_11:115821075-115821177:-|nuORF	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	ENST00000490223.1_1_3:23959920-23960989:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	956.400146484375	1	956.399603	955.392327	0.46113	0.00044103	-0.64107	-0.00061312	-0.17994	-0.0001721	956.398741461849	37.376	0.25771	37.273	37.078	37.335	-0.10318					8	4	2	0	0	0	0.13911	1	14005	14005		86.121	28.65	1	68803000			38506	5346	24730	24854	37060	37060					-0.0871536402419224
WVGPASER	8	Unmodified	_WVGPASER_					0	0	0		ENST00000479668.5_1_7:150070169-150070337:+|nuORF	ENST00000479668.5_1_7:150070169-150070337:+|nuORF	ENST00000479668.5_1_7:150070169-150070337:+|nuORF	MSMS	HCT116MG_D190212_S2	2	451.2298583984375	2	451.229959	900.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.171	1	20.789	20.289	21.289	-0.38288								0	0	0	0.79325	1	7436	7436		23.148	0	1				38507	8230	24731	24855	37061	37061					-0.008839414508543086
WVGPRLPLNL	10	Unmodified	_WVGPRLPLNL_					0	0	0			REV__ENSG00000103489|ENST00000261381|XYLT1	REV__ENSG00000103489|ENST00000261381|XYLT1	MSMS	HCT116MG_D190212_S1	1	388.9013977050781	3	388.901114	1163.68151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.302	1	10.302	9.8019	10.802	0								0	0	0	0.97045	1	3152	3152		0.15932	0.064481	1		+		38508	11192	24732	24856	37062	37062					0.10621990393610758
WVHRFEVV	8	Unmodified	_WVHRFEVV_					0	0	0		sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1;sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	536.290771484375	2	536.290351	1070.56615	0.452	0.00024241	0.070374	3.7741E-05	0.52238	0.00028015	536.2903334380994	51.233	0.25731	51.054	50.914	51.171	-0.17868					11	4	3	0	0	0	0.62424	1	19671	19671		30.225	16.319	1	20385000			38509	18207	24733	24857	37063	37063					0.03368886262592241
WVHRQNYRWER	11	Unmodified	_WVHRQNYRWER_					0	0	0			REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF	REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF	MSMS	HCT116MG_D190212_S2	2	544.1326904296875	3	543.943035	1628.80728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.417	1	63.294	62.794	63.794	-0.12264								0	0	0	0.96208	1	24583	24583		0	0	1		+		38510	15592	24734	24858	37064	37064					0.018024702317234187
WVHRQNYRWER	11	Unmodified	_WVHRQNYRWER_					0	0	0			REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF	REV__ENST00000432815.2_1_1:173332252-173332432:-|nuORF	MSMS	HCT116MG_D190212_S4	4	543.9431762695312	3	543.943035	1628.80728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.512	1	15.351	14.851	15.851	-0.16173								0	0	0	0.9619	1	5006	5006		0.094841	0.011491	1		+		38511	15592	24734	24858	37065	37065					0.018024702317234187
WVIGSVVA	8	Unmodified	_WVIGSVVA_					0	0	0		GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant;ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	GART|p.K807Gfs*26|1|0.08|ENSG00000159131|chr21:33509815-33509816|TT/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	830.4771728515625	1	830.477066	829.469789	0.81124	0.00067372	-0.49743	-0.0004131	0.31381	0.00026061	830.476549323009	54.824	0.25642	54.636	54.509	54.765	-0.18797					6	4	2	0	0	0	0.21411	1	21146	21146		70.865	3.8292	1	28959000			38512	4398	24735	24859	37066	37066					0.04823318702665347
WVKWWWAYWRQ	11	Unmodified	_WVKWWWAYWRQ_					0	0	0			REV__NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant	REV__NAB2|p.P211Lfs*58|2|0.21|ENSG00000166886|chr12:57091667-57091667|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S1	1	847.9212036132812	2	847.922595	1693.83064	0.8818	0.0007477	-3.1103	-0.0026373	-2.2285	-0.0018896	847.9205568068852	35.204	0.20557	35.204	35.114	35.319	0					5	3	2	0	0	0	0.36628	1	13121	13121		0	0	1	8475000	+		38513	17059	24736	24860	37067	37067					0.011475160163399778
WVLIPGLLL	9	Unmodified	_WVLIPGLLL_					0	0	0		EBPL|p.G174S|1|0.1|ENSG00000123179|chr13:49661069-49661069|C/T|missense_variant;ENST00000378270.5_1_13:50235106-50265589:-|nuORF;ENSG00000123179|ENST00000242827|EBPL	EBPL|p.G174S|1|0.1|ENSG00000123179|chr13:49661069-49661069|C/T|missense_variant	EBPL|p.G174S|1|0.1|ENSG00000123179|chr13:49661069-49661069|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	512.3346557617188	2	512.333696	1022.65284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.299	1	59.035	58.535	59.535	-0.26405								0	0	0	0.77008	1	22578	22578		0.6015	0	1				38514	749	24737	24861	37068	37068					0.14241872764478103
WVLIPGLLL	9	Unmodified	_WVLIPGLLL_					0	0	0		EBPL|p.G174S|1|0.1|ENSG00000123179|chr13:49661069-49661069|C/T|missense_variant;ENST00000378270.5_1_13:50235106-50265589:-|nuORF;ENSG00000123179|ENST00000242827|EBPL	EBPL|p.G174S|1|0.1|ENSG00000123179|chr13:49661069-49661069|C/T|missense_variant	EBPL|p.G174S|1|0.1|ENSG00000123179|chr13:49661069-49661069|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	512.3353271484375	2	512.333696	1022.65284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.286	1	59.008	58.508	59.508	-0.27731								0	0	0	0.77008	1	22306	22306		0.6015	0	1				38515	749	24737	24861	37069	37069					0.14241872764478103
WVLLVAILK	9	Unmodified	_WVLLVAILK_					0	0	0		nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	MSMS	HCT116MG_D190212_S1	1	527.8541259765625	2	527.854796	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.118	1	12.118	11.618	12.618	0								0	0	0	0.77025	1	3868	3868		0	0	1				38516	9665	24738	24862	37070	37070					0.17033848172832222
WVLLVAILK	9	Unmodified	_WVLLVAILK_					0	0	0		nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	MSMS	HCT116MG_D190212_S1	1	352.23834228515625	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.711	1	64.711	64.211	65.211	0								0	0	0	0.77025	1	24946	24946		0	0	1				38517	9665	24738	24862	37071	37071					0.17033848172832222
WVLLVAILK	9	Unmodified	_WVLLVAILK_					0	0	0		nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	MSMS	HCT116MG_D190212_S2	2	352.2384033203125	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.872	1	13.56	13.06	14.06	-0.31202								0	0	0	0.77025	1	4535	4535		0	0	1				38518	9665	24738	24862	37072	37072					0.17033848172832222
WVLLVAILK	9	Unmodified	_WVLLVAILK_					0	0	0		nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	MSMS	HCT116MG_D190212_S3	3	352.238525390625	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.29	1	64.085	63.585	64.585	-0.20569								0	0	0	0.77025	1	24469	24469		0	0	1				38519	9665	24738	24862	37073	37073					0.17033848172832222
WVLLVAILK	9	Unmodified	_WVLLVAILK_					0	0	0		nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	MSMS	HCT116MG_D190212_S4	4	352.23828125	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.681	1	3.4165	2.9165	3.9165	-0.26456								0	0	0	0.77025	1	1125	1125		0	0	1				38520	9665	24738	24862	37074	37074					0.17033848172832222
WVLLVAILK	9	Unmodified	_WVLLVAILK_					0	0	0		nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	MSMS	HCT116MG_D190212_S4	4	352.2380676269531	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8162	1	7.5746	7.0746	8.0746	-0.24153								0	0	0	0.77025	1	2388	2388		0	0	1				38521	9665	24738	24862	37075	37075					0.17033848172832222
WVLLVAILK	9	Unmodified	_WVLLVAILK_					0	0	0		nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	MSMS	HCT116MG_D190212_S4	4	352.23828125	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8211	1	9.6218	9.1218	10.122	-0.1993								0	0	0	0.77025	1	3011	3011		0	0	1				38522	9665	24738	24862	37076	37076					0.17033848172832222
WVLLVAILK	9	Unmodified	_WVLLVAILK_					0	0	0		nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D	MSMS	HCT116MG_D190212_S4	4	352.238525390625	3	352.238956	1053.69504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14	1	13.837	13.337	14.337	-0.16233								0	0	0	0.77025	1	4414	4414		0	0	1				38523	9665	24738	24862	37077	37077					0.17033848172832222
WVLVMGDMS	9	Unmodified	_WVLVMGDMS_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MSMS	HCT116MG_D190212_S2	2	519.245361328125	2	519.243363	1036.47217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.666	1	58.501	58.001	59.001	-0.1653								0	0	0	0.76967	1	22679	22679		2.0598	1.2661	1		+		38524	11246	24739	24863	37078	37078					-0.044603369462038245
WVPILTVIV	9	Unmodified	_WVPILTVIV_					0	0	0		nc|ENSG00000129353|Q8IWA5-2|SLC44A2;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;ENST00000589561.5_1_19:10746968-10754058:+|nuORF	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	MSMS	HCT116MG_D190212_S1	1	520.30224609375	2	520.331153	1038.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.496	1	51.496	50.996	51.996	0								0	0	0	0.76877	1	19676	19676		5.2307	0.47466	1				38525	9458	24740	24864	37079	37079					0.12997568901823797
WVRFKCFFYYW	11	Unmodified	_WVRFKCFFYYW_					0	0	0			REV__ENST00000332843.2_1_8:120079524-120116116:+|nuORF	REV__ENST00000332843.2_1_8:120079524-120116116:+|nuORF	MSMS	HCT116MG_D190212_S3	3	549.1209716796875	3	548.932197	1643.77476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.039	1	49.724	49.224	50.224	-0.31525								0	0	0	0.96192	1	18859	18859		0.08335	0.08335	1		+		38526	14937	24741	24865	37080	37080					-0.021374532154595727
WVRGGLPGKAC	11	Unmodified	_WVRGGLPGKAC_					0	0	0		ENST00000300417.10_1_9:130265489-130265732:+|nuORF	ENST00000300417.10_1_9:130265489-130265732:+|nuORF	ENST00000300417.10_1_9:130265489-130265732:+|nuORF	MSMS	HCT116MG_D190212_S1	1	381.8744201660156	3	381.874571	1142.60188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8362	1	1.8362	1.3362	2.3362	0								0	0	0	0.96208	1	557	557		0	0	1				38527	6994	24742	24866	37081	37081					0.036286004479961775
WVRVNKVPV	9	Unmodified	_WVRVNKVPV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33985*|1|0.28|ENSG00000155657|chr2:178528874-178528874|A/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.D32935Lfs*3|1|0.05|ENSG00000155657|chr2:178532889-178532890|-/AATACAG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.I32444Sfs*4|1|0.08|ENSG00000155657|chr2:178534363-178534363|A/-|frameshift_variant;TTN|p.A31696Lfs*12|1|0.31|ENSG00000155657|chr2:178537100-178537100|C/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	HCT116MG_D190212_S4	4	366.1912841796875	3	366.225709	1095.6553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.421	1	56.115	55.615	56.615	-0.30626								0	0	0	0.77008	1	21150	21150		0.26902	0	1				38528	4258;9506	24743	24867	37082	37082					0.11129721222141598
WVTYFNKP	8	Unmodified	_WVTYFNKP_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-SECPEP	HCT116MG_D190212_S2	2	352.196533203125	3	352.183399	1053.52837	-0.21526	-7.5811E-05	-0.77444	-0.00027275	-0.98971	-0.00034856	352.1832085594929	21.474	0.72616	21.091	20.703	21.429	-0.38288					14	13	2	0	0	0	0.32902	1	7474	7474		3.9444	0.94915	1	5144500			38529	5513	24744	24868	37083	37083					0.0037437527712427254
WVVRPILHC	9	Unmodified	_WVVRPILHC_					0	0	0			REV__ENST00000295461.9_1_4:48037915-48038026:+|nuORF	REV__ENST00000295461.9_1_4:48037915-48038026:+|nuORF	MSMS	HCT116MG_D190212_S1	1	374.8795471191406	3	374.879545	1121.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.88	1	12.88	12.38	13.38	0								0	0	0	0.77025	1	4157	4157		0	0	1		+		38530	14758	24745	24869	37084	37084					0.06086092315968017
WVVRPILHCL	10	Unmodified	_WVVRPILHCL_					0	0	0			REV__ENST00000295461.9_1_4:48037915-48038026:+|nuORF	REV__ENST00000295461.9_1_4:48037915-48038026:+|nuORF	MSMS	HCT116MG_D190212_S3	3	618.3579711914062	2	618.357711	1234.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.753	1	62.53	62.03	63.03	-0.22315								0	0	0	0.97116	1	23972	23972		0	0	1		+		38531	14758	24746	24870	37085	37085					0.0929062341288045
WVWAHRHIGE	10	Unmodified	_WVWAHRHIGE_					0	0	0		nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	MSMS	HCT116MG_D190212_S2	2	430.8882751464844	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.9233	1	1.9101	1.4101	2.4101	-0.013221								0	0	0	0.97054	1	622	622		0.13989	0	1				38532	9676	24747	24871	37086	37086					0.00853863442898728
WVWAHRHIGE	10	Unmodified	_WVWAHRHIGE_					0	0	0		nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	MSMS	HCT116MG_D190212_S2	2	430.8880615234375	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1259	1	7.8947	7.3947	8.3947	-0.23116								0	0	0	0.97054	1	2540	2540		0.13989	0	1				38533	9676	24747	24871	37087	37087					0.00853863442898728
WVWAHRHIGE	10	Unmodified	_WVWAHRHIGE_					0	0	0		nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	MSMS	HCT116MG_D190212_S2	2	430.88787841796875	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.672	1	63.549	63.049	64.049	-0.12264								0	0	0	0.97054	1	24678	24678		0.13989	0	1				38534	9676	24747	24871	37088	37088					0.00853863442898728
WVWAHRHIGE	10	Unmodified	_WVWAHRHIGE_					0	0	0		nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	MSMS	HCT116MG_D190212_S3	3	430.8882141113281	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.4035	1	1.4644	0.96437	1.9644	0.060905								0	0	0	0.97054	1	437	437		0.13989	0	1				38535	9676	24747	24871	37089	37089					0.00853863442898728
WVWAHRHIGE	10	Unmodified	_WVWAHRHIGE_					0	0	0		nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	nc|ENSG00000290184|Q9BZS1-3|FOXP3	MSMS	HCT116MG_D190212_S3	3	430.88800048828125	3	430.887868	1289.64177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.277	1	63.063	62.563	63.563	-0.21454								0	0	0	0.97054	1	24161	24161		0.13989	0	1				38536	9676	24747	24871	37090	37090					0.00853863442898728
WVWAQLEEPL	10	Unmodified	_WVWAQLEEPL_					0	0	0			REV__ZSCAN31|p.R100W|3|0.42|ENSG00000235109|chr6:28329386-28329386|G/A|missense_variant	REV__ZSCAN31|p.R100W|3|0.42|ENSG00000235109|chr6:28329386-28329386|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	635.8247680664062	2	635.826963	1269.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.362	1	34.976	34.476	35.476	-0.38606								0	0	0	0.94339	1	12949	12949		6.2058	0.47393	1		+		38537	18095	24748	24872	37091	37091					0.015339701945549677
WWCRRWSARRL	11	Unmodified	_WWCRRWSARRL_					0	0	0			REV__ADAMTS8|p.A207Pfs*38|1|0.31|ENSG00000134917|chr11:130427668-130427668|C/-|frameshift_variant	REV__ADAMTS8|p.A207Pfs*38|1|0.31|ENSG00000134917|chr11:130427668-130427668|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	788.4157104492188	2	788.414946	1574.81534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.961	1	27.772	27.272	28.272	-0.18847								0	0	0	0.95954	1	10099	10099		1.3295	0	1		+		38538	9860	24749	24873	37092	37092					0.05092325947498466
WWCWQEWIHYS	11	Unmodified	_WWCWQEWIHYS_					0	0	0		ENST00000552329.1_3_12:102111123-102117010:+|nuORF	ENST00000552329.1_3_12:102111123-102117010:+|nuORF	ENST00000552329.1_3_12:102111123-102117010:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	406.55133056640625	4	406.676403	1622.6765	0.089872	3.6549E-05	-0.042826	-1.7416E-05	0.047046	1.9133E-05	406.6763737181777	12.923	0.4493	12.992	12.868	13.317	0.069158					30	18	2	0	0	0	0.36631	1	4034	4034		0	0	1	1079900			38539	8764	24750	24874	37093	37093					-0.10992681531320159
WWEKKRSPDKK	11	Unmodified	_WWEKKRSPDKK_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MSMS	HCT116MG_D190212_S1	1	744.4113159179688	2	744.409518	1486.80448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.476	1	16.476	15.976	16.976	0								0	0	0	0.9598	1	5547	5547		1.1933	0	1		+		38540	11459	24751	24875	37094	37094					0.08055202054197252
WWEMKDRHQIL	11	Unmodified	_WWEMKDRHQIL_					0	0	0		ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	MSMS	HCT116MG_D190212_S3	3	771.3900146484375	2	771.387728	1540.7609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.307	1	33.016	32.516	33.516	-0.29013								0	0	0	0.95925	1	12219	12219		1.4819	0	1				38541	6213	24752	24876	37095	37095					0.012152692854442648
WWFSWRRRDFL	11	Unmodified	_WWFSWRRRDFL_					0	0	0		LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant;ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant	LPIN3|p.K715Rfs*19|1|0.47|ENSG00000132793|chr20:41357981-41357981|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	827.9253540039062	2	827.923126	1653.8317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.755	1	34.755	34.255	35.255	0								0	0	0	0.9598	1	12906	12906		1.1933	0.92432	1				38542	3212	24753	24877	37096	37096					0.030937303852397235
WWGIPWSSQRR	11	Unmodified	_WWGIPWSSQRR_					0	0	0		ENST00000372398.5_1_9:132984955-132985430:+|nuORF	ENST00000372398.5_1_9:132984955-132985430:+|nuORF	ENST00000372398.5_1_9:132984955-132985430:+|nuORF	MSMS	HCT116MG_D190212_S3	3	730.2080078125	2	729.873102	1457.73165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.905	1	23.843	23.343	24.343	-0.061449								0	0	0	0.95521	1	8463	8463		3.5965	0.60125	1				38543	7455	24754	24878	37097	37097					0.02109493051420941
WWHSYWRVWIY	11	Unmodified	_WWHSYWRVWIY_					0	0	0		ENST00000295992.7_1_3:142606565-142606607:-|nuORF	ENST00000295992.7_1_3:142606565-142606607:-|nuORF	ENST00000295992.7_1_3:142606565-142606607:-|nuORF	MSMS	HCT116MG_D190212_S4	4	841.4063720703125	2	841.406778	1680.799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.261	1	17.09	16.59	17.59	-0.17047								0	0	0	0.96208	1	5713	5713		0	0	1				38544	6980	24755	24879	37098	37098					-0.014164767376087184
WWLLWTYRYM	10	Unmodified	_WWLLWTYRYM_					0	0	0			REV__sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1	REV__sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	759.3515014648438	2	759.373558	1516.73256	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.649	1	33.358	32.858	33.858	-0.29013								0	0	0	0.95507	1	12357	12357		3.5965	0.31518	1		+		38545	17573	24756	24880	37099	37099					-0.005134286238671848
WWPQWWLWRYS	11	Unmodified	_WWPQWWLWRYS_					0	0	0			REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S3	3	847.4049682617188	2	847.406778	1692.799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.263	1	36.961	36.461	37.461	-0.30137								0	0	0	0.95636	1	13796	13796		2.9952	2.6882	1		+		38546	10178	24757	24881	37100	37100					-0.019684767376020318
WWQPREEHWR	10	Unmodified	_WWQPREEHWR_					0	0	0		ENST00000403433.5_2_1:153606765-153609098:+|nuORF	ENST00000403433.5_2_1:153606765-153609098:+|nuORF	ENST00000403433.5_2_1:153606765-153609098:+|nuORF	MSMS	HCT116MG_D190212_S1	1	755.1890869140625	2	755.360359	1508.70617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.419	1	24.419	23.919	24.919	0								0	0	0	0.96521	1	8741	8741		1.3295	0.13619	1				38547	7703	24758	24882	37101	37101					-0.0278398147097505
WWRWWEHRLLW	11	Unmodified	_WWRWWEHRLLW_					0	0	0		ENST00000564785.5_1_15:75650962-75651301:-|nuORF;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	ENST00000564785.5_1_15:75650962-75651301:-|nuORF	ENST00000564785.5_1_15:75650962-75651301:-|nuORF	MSMS	HCT116MG_D190212_S2	2	877.4454956054688	2	877.446769	1752.87898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.243	1	25.881	25.381	26.381	-0.36164								0	0	0	0.96141	1	9486	9486		0.35063	0.35063	1				38548	8834	24759	24883	37102	37102					0.032660096562722174
WWTKEMWWK	9	Unmodified	_WWTKEMWWK_					0	0	0		ENST00000586183.5_1_16:4714755-4715114:+|nuORF	ENST00000586183.5_1_16:4714755-4715114:+|nuORF	ENST00000586183.5_1_16:4714755-4715114:+|nuORF	MSMS	HCT116MG_D190212_S1	1	690.8303833007812	2	690.831526	1379.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.104	1	14.104	13.604	14.604	0								0	0	0	0.7701	1	4599	4599		0.52476	0.12405	1				38549	8992	24760	24884	37103	37103					-0.026139597207702536
WWWEQKEEPFY	11	Unmodified	_WWWEQKEEPFY_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	HCT116MG_D190212_S3	3	814.86865234375	2	814.364441	1626.71433	0.95029	0.00077388	2.9241	0.0023813	3.8744	0.0031552	814.8684951662686	19.309	0.20831	19.369	19.229	19.438	0.05983					7	3	3	0	0	0	0.74191	1	6638	6638		4.897	3.5675	1	3687600	+		38550	10562	24761	24885	37104	37104					-0.07395892064869258
WWWEQKEEPFY	11	Unmodified	_WWWEQKEEPFY_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	814.364441	1626.71433	0.95029	0.00077388	2.9241	0.0023813	3.8744	0.0031552	814.8684951662686	19.309	0.20831	19.369	19.229	19.438	0.05983	-0.061218	0.00028806	NaN	4.897	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3687600	+		38551	10562	24761	24885							-0.07395892064869258
WWWEQKEEPFY	11	Unmodified	_WWWEQKEEPFY_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	814.364441	1626.71433	0.88062	0.00071714	2.624	0.0021369	3.5046	0.002854	814.3664157188706	19.685	0.19826	19.492	19.382	19.58	-0.19368	0.061218	-0.00020085	NaN	4.897	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1923800	+		38552	10562	24761	24885							-0.07395892064869258
WWWFLHKFRPD	11	Unmodified	_WWWFLHKFRPD_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B;FAM227B|p.K294Nfs*12|1|0.09|ENSG00000166262|chr15:49508341-49508341|T/-|frameshift_variant;FAM227B|p.A319Hfs*6|1|0.52|ENSG00000166262|chr15:49508269-49508269|T/-|frameshift_variant	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MSMS	HCT116MG_D190212_S1	1	539.9414672851562	3	539.941973	1616.80409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.056	1	11.056	10.556	11.556	0								0	0	0	0.96208	1	3446	3446		0	0	1				38553	4834	24762	24886	37105	37105					0.020358271249961035
WWWWPQWWLWR	11	Unmodified	_WWWWPQWWLWR_					0	0	0			REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S2	2	908.43603515625	2	908.438412	1814.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.736	1	38.651	38.151	39.151	-0.084618								0	0	0	0.96208	1	14557	14557		0	0	1		+		38554	10178	24763	24887	37106	37106					-0.012564912296966213
WWWWPQWWLWR	11	Unmodified	_WWWWPQWWLWR_					0	0	0			REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S2	2	606.3504028320312	3	605.961367	1814.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.26	1	44.182	43.682	44.682	-0.078373								0	0	0	0.96208	1	16806	16806		0	0	1		+		38555	10178	24763	24887	37107	37107					-0.012564912296966213
WWWWPQWWLWR	11	Unmodified	_WWWWPQWWLWR_					0	0	0			REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S4	4	908.437255859375	2	908.438412	1814.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.988	1	56.687	56.187	57.187	-0.3004								0	0	0	0.96149	1	21378	21378		0.30703	0.30703	1		+		38556	10178	24763	24887	37108	37108					-0.012564912296966213
WWWWPQWWLWR	11	Unmodified	_WWWWPQWWLWR_					0	0	0			REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S4	4	908.4375610351562	2	908.438412	1814.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.023	1	56.723	56.223	57.223	-0.3004								0	0	0	0.96208	1	21392	21392		0	0	1		+		38557	10178	24763	24887	37109	37109					-0.012564912296966213
WWWWPQWWLWR	11	Unmodified	_WWWWPQWWLWR_					0	0	0			REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282823-54283827|481|40.36|0.0|21.94|+|1|HNRNPA1,HNRNPA1|1	MSMS	HCT116MG_D190212_S4	4	908.4368286132812	2	908.438412	1814.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.482	1	61.222	60.722	61.722	-0.2602								0	0	0	0.96208	1	23195	23195		0	0	1		+		38558	10178	24763	24887	37110	37110					-0.012564912296966213
WWYRPFQYFEK	11	Unmodified	_WWYRPFQYFEK_					0	0	0		ENSG00000198964|ENST00000361781|SGMS1;nc|ENSG00000198964|Q86VZ5-2|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	MSMS	HCT116MG_D190212_S3	3	825.3994750976562	2	825.398618	1648.78268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.266	1	40.965	40.465	41.465	-0.30185								0	0	0	0.96141	1	15346	15346		0.35063	0	1				38559	6309	24764	24888	37111	37111					-0.015756026943790857
WYCCCCCR	8	Unmodified	_WYCCCCCR_					0	0	0			REV__ENST00000462632.5_3_6:29599325-29601631:-|nuORF	REV__ENST00000462632.5_3_6:29599325-29601631:-|nuORF	MSMS	HCT116MG_D190212_S2	2	520.1569213867188	2	520.157396	1038.30024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.763	1	12.466	11.966	12.966	-0.29721								0	0	0	0.8837	1	4174	4174		0	0	1		+		38560	15799	24765	24889	37112	37112					-0.2173785150139338
WYFRRQHEKRR	11	Unmodified	_WYFRRQHEKRR_					0	0	0			REV__ENSG00000171044|ENST00000416569|XKR6	REV__ENSG00000171044|ENST00000416569|XKR6	MSMS	HCT116MG_D190212_S1	1	831.4452514648438	2	831.447831	1660.88111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.022	1	41.022	40.522	41.522	0								0	0	0	0.96149	1	15435	15435		0.30703	0.03801	1		+		38561	13328	24766	24890	37113	37113					0.07710438394042285
WYFWRRHVFIW	11	Unmodified	_WYFWRRHVFIW_					0	0	0		ENST00000441875.1_1_17:16330801-16331912:+|nuORF;ENSG00000187688|ENST00000338560|TRPV2	ENST00000441875.1_1_17:16330801-16331912:+|nuORF	ENST00000441875.1_1_17:16330801-16331912:+|nuORF	MSMS	HCT116MG_D190212_S2	2	848.4358520507812	2	848.438412	1694.86227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.99	1	24.615	24.115	25.115	-0.37521								0	0	0	0.96208	1	8980	8980		0	0	1				38562	5953	24767	24891	37114	37114					0.042635087702819874
WYGVEFGQP	9	Unmodified	_WYGVEFGQP_					0	0	0			REV__nc|ENSG00000149972|O94779-2|CNTN5	REV__nc|ENSG00000149972|O94779-2|CNTN5	MSMS	HCT116MG_D190212_S4	4	541.7503662109375	2	541.750724	1081.4869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.454	1	18.273	17.773	18.773	-0.18052								0	0	0	0.74436	1	6195	6195		16.942	1.6938	1		+		38563	12578	24768	24892	37115	37115					-0.050588054821901096
WYHRYQNK	8	Unmodified	_WYHRYQNK_					0	0	0			REV__nc|ENSG00000067182|P19438-5|TNFRSF1A	REV__nc|ENSG00000067182|P19438-5|TNFRSF1A	MSMS	HCT116MG_D190212_S2	2	597.7948608398438	2	597.793789	1193.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4506	1	6.276	5.776	6.776	-0.17458								0	0	0	0.8837	1	2036	2036		0.69038	0	1		+		38564	10727	24769	24893	37116	37116					-0.016018008568380537
WYKYFQYLTFM	11	Unmodified	_WYKYFQYLTFM_					0	0	0		nc|ENSG00000215296|A8MYB1|TMCO5B	nc|ENSG00000215296|A8MYB1|TMCO5B	nc|ENSG00000215296|A8MYB1|TMCO5B	MSMS	HCT116MG_D190212_S4	4	795.379150390625	2	795.378506	1588.74246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.7	1	22.462	21.962	22.962	-0.23758								0	0	0	0.95636	1	7911	7911		2.9952	0.49676	1				38565	9634	24770	24894	37117	37117					-0.028362854091483314
WYLCMTSQHPQ	11	Unmodified	_WYLCMTSQHPQ_					0	0	0			REV__ENST00000567344.1_1_16:17232236-17232413:+|nuORF	REV__ENST00000567344.1_1_16:17232236-17232413:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	697.8096923828125	2	697.305015	1392.59548	0.74892	0.00052223	4.3896	0.0030609	5.1385	0.0035831	697.8085763418084	18.324	0.31286	18.324	18.141	18.454	0					7	5	2	0	0	0	0.36423	1	6328	6328		4.897	3.8255	1	2170300	+		38566	16551	24771	24895	37118	37118					-0.08511705565729244
WYLQSRLLDC	10	Unmodified	_WYLQSRLLDC_					0	0	0			REV__ENST00000535123.6_1_12:53673494-53681766:+|nuORF	REV__ENST00000535123.6_1_12:53673494-53681766:+|nuORF	MSMS	HCT116MG_D190212_S3	3	432.88482666015625	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5504	1	5.5679	5.0679	6.0679	0.017489								0	0	0	0.97054	1	1677	1677		0.13989	0	1		+		38567	12093	24772	24896	37119	37119					-0.002748713086020871
WYMERRPHRMF	11	Unmodified	_WYMERRPHRMF_					0	0	0			REV__ENSG00000137338|ENST00000682144|PGBD1	REV__ENSG00000137338|ENST00000682144|PGBD1	MSMS	HCT116MG_D190212_S1	1	804.8900756835938	2	804.887372	1607.76019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.147	1	25.147	24.647	25.647	0								0	0	0	0.95636	1	9033	9033		2.9952	2.6882	1		+		38568	12173	24773	24897	37120	37120					-0.019378486352934488
WYPRRRTSKIR	11	Unmodified	_WYPRRRTSKIR_					0	0	0			REV__ENST00000465432.1_1_2:99797706-99812165:+|nuORF	REV__ENST00000465432.1_1_2:99797706-99812165:+|nuORF	MSMS	HCT116MG_D190212_S1	1	759.9407958984375	2	759.94185	1517.86915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.744	1	59.744	59.244	60.244	0								0	0	0	0.96157	1	23026	23026		0.26902	0.26902	1		+		38569	13845	24774	24898	37121	37121					0.13092821650866426
WYRHQWRRRW	10	Unmodified	_WYRHQWRRRW_					0	0	0			REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF	REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF	MSMS	HCT116MG_D190212_S3	3	815.42626953125	2	815.424159	1628.83377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.9	1	25.772	25.272	26.272	-0.12795								0	0	0	0.96937	1	9268	9268		0.40072	0.40072	1		+		38570	16496	24775	24899	37122	37122					0.04450203913711448
YAAQAAAETL	10	Unmodified	_YAAQAAAETL_					0	0	0			REV__ENST00000489129.5_1_15:63032816-63046163:+|nuORF	REV__ENST00000489129.5_1_15:63032816-63046163:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	504.3009033203125	2	504.753464	1007.49238	0.15406	7.776E-05	0.12993	6.5581E-05	0.28398	0.00014334	504.75335314443464	40.12	0.20713	40.12	39.969	40.176	0					5	3	2	0	0	0	0.30526	1	15013	15013		6.2058	1.4498	1	7176100	+		38571	13365	24776	24900	37123	37123					-0.011071266903741162
YAAQENLEY	9	Unmodified	_YAAQENLEY_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	HCT116MG_D190212_S1	1	550.7487182617188	2	550.748379	1099.4822	0.57259	0.00031535	-0.0054009	-2.9745E-06	0.56719	0.00031238	550.7482433358506	36.1	0.26045	36.1	35.942	36.202	0					7	4	2	0	0	0	0.020181	1	13458	13458		96.285	49.364	1	7189000			38572	3330	24777	24901	37124	37124					-0.06355734415615188
YAAQENLEY	9	Unmodified	_YAAQENLEY_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	HCT116MG_D190212_S2	2	550.748779296875	2	550.748379	1099.4822	0.66075	0.00036391	0.8105	0.00044638	1.4713	0.00081029	550.748555861179	36.225	0.36233	36.097	35.864	36.226	-0.12799					17	6	4	0	0	0	0.12994	1	13548	13548		52.268	25.927	1	24612000			38573	3330	24777	24901	37125	37125					-0.06355734415615188
YADEKTKDV	9	Unmodified	_YADEKTKDV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S2	2	534.799072265625	2	534.764029	1067.5135	0.47402	0.00025349	-0.21499	-0.00011497	0.25903	0.00013852	534.7638848367426	17.353	0.26147	17.004	16.873	17.135	-0.34933					8	4	2	0	0	0	0.004234	2	5899	5899;5922		147.24	76.909	1	19445000			38574	3119	24778	24902	37126;37127	37126					-0.017551613815157907
YADEKTKDV	9	Unmodified	_YADEKTKDV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S3	3	534.76416015625	2	534.764029	1067.5135	0.40251	0.00021525	0.17155	9.1741E-05	0.57406	0.00030699	534.7639627957502	16.126	0.20797	16.211	16.081	16.289	0.085424					6	3	2	0	0	0	0.14268	1	5353	5353		49.742	23.474	1	5665900			38575	3119	24778	24902	37128	37128					-0.017551613815157907
YADEKTKDV	9	Unmodified	_YADEKTKDV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;AKAP12|p.N1461Mfs*26|1|0.52|ENSG00000131016|chr6:151352767-151352767|A/-|frameshift_variant;AKAP12|p.E1404Rfs*18|1|0.17|ENSG00000131016|chr6:151352600-151352600|G/-|frameshift_variant	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	HCT116MG_D190212_S4	4	534.7633666992188	2	534.764029	1067.5135	-0.17228	-9.213E-05	0.73659	0.0003939	0.5643	0.00030177	534.7640309632692	16.458	0.22874	16.293	16.173	16.402	-0.16446					12	4	3	0	0	0	0.30054	2	5406	5399;5406		30.703	15.455	1	1110100			38576	3119	24778	24902	37129;37130	37130					-0.017551613815157907
YADGESFLGY	10	Unmodified	_YADGESFLGY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1121.479736328125	1	1121.47858	1120.47131	0.45431	0.0005095	0.19573	0.00021951	0.65004	0.00072901	1121.4784889455382	51.174	0.25774	51.174	51.04	51.297	0					11	4	3	0	0	0	0.047709	1	19545	19545		88.904	52.777	1	36741000			38577	4411	24779	24903	37131	37131					-0.08411136789891316
YADGESFLGY	10	Unmodified	_YADGESFLGY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1121.4791259765625	1	1121.47858	1120.47131	0.55272	0.00061987	-0.16757	-0.00018793	0.38515	0.00043194	1121.4783619592517	51.465	0.46254	51.283	51.065	51.528	-0.18228					22	8	4	0	0	0	0.047709	1	19735	19735		88.904	52.777	1	88380000			38578	4411	24779	24903	37132	37132					-0.08411136789891316
YADGESFLGY	10	Unmodified	_YADGESFLGY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1121.47998046875	1	1121.47858	1120.47131	0.37069	0.00041572	0.32582	0.0003654	0.69651	0.00078112	1121.4788518705698	51.59	0.36671	51.278	51.12	51.486	-0.31166					14	6	3	0	0	0	0.047709	1	19486	19486		88.904	52.777	1	10841000			38579	4411	24779	24903	37133	37133					-0.08411136789891316
YADNQVMHFY	10	Unmodified	_YADNQVMHFY_					0	0	0		POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	644.2767944335938	2	644.27678	1286.53901	0.74341	0.00047896	0.3137	0.00020211	1.0571	0.00068107	644.2764382893987	45.485	0.26064	45.485	45.347	45.607	0					10	4	3	0	0	0	0.0163	1	17239	17239		128.93	96.147	1	15790000			38580	5449	24780	24904	37134	37134					-0.09280010130737537
YADNQVMHFY	10	Unmodified	_YADNQVMHFY_					0	0	0		POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant;ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	POLE|p.A2030Pfs*18|1|0.14|ENSG00000177084|chr12:132632712-132632712|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		2	644.27678	1286.53901	0.57412	0.00036989	-0.21557	-0.00013889	0.35856	0.00023101	644.7779938334407	45.471	0.30935	45.378	45.153	45.462	-0.092472	-0.053138	-0.00016195	NaN	128.93	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15182000			38581	5449	24780	24904							-0.09280010130737537
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	HCT116MG_D190212_S1	1	525.23828125	2	525.237981	1048.46141	0.49552	0.00026027	-0.31125	-0.00016348	0.18427	9.6785E-05	525.2377640810331	31.24	0.2604	31.24	31.076	31.336	0					8	4	2	0	0	0	0.069315	1	11487	11487		65.235	31.133	1	7481100			38582	2630	24781	24905	37135	37135					-0.060882800046329066
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	HCT116MG_D190212_S2	2	525.7391357421875	2	525.237981	1048.46141	0.62064	0.00032598	-0.26151	-0.00013736	0.35912	0.00018862	525.2378165196676	31.435	0.36193	31.186	30.94	31.302	-0.24883					17	6	3	0	0	0	0.027442	1	11582	11582		88.954	46.859	1	34913000			38583	2630	24781	24905	37136	37136					-0.060882800046329066
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	HCT116MG_D190212_S3	3	525.238037109375	2	525.237981	1048.46141	0.3324	0.00017459	0.083254	4.3728E-05	0.41565	0.00021832	525.2379854057722	31.589	0.36523	31.318	31.117	31.482	-0.27027					10	6	2	0	0	0	0.31596	1	11589	11589		29.082	3.6823	1	4303900			38584	2630	24781	24905	37137	37137					-0.060882800046329066
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	525.237981	1048.46141	0.30516	0.00016028	-0.07225	-3.7949E-05	0.23291	0.00012233	525.2381763931155	31.648	0.20775	31.277	31.179	31.387	-0.37026	0.021932	0.0001775	NaN	88.954	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1483000			38585	2630	24781	24905							-0.060882800046329066
YADYSGQQSTY	11	Unmodified	_YADYSGQQSTY_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MULTI-MSMS	HCT116MG_D190212_S1	1	641.76513671875	2	641.764757	1281.51496	0.99935	0.00064135	-0.38181	-0.00024503	0.61754	0.00039632	641.7643307654732	28.508	0.42569	28.508	28.268	28.694	0					15	7	4	0	0	0	0.01748	1	10387	10387		133.05	96.546	1	33298000			38586	4162	24782	24906	37138	37138					-0.11453572083405561
YADYSGQQSTY	11	Unmodified	_YADYSGQQSTY_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MULTI-MSMS	HCT116MG_D190212_S3	3	641.7643432617188	2	641.764757	1281.51496	0.72404	0.00046466	-0.064258	-4.1238E-05	0.65978	0.00042342	641.7642755985271	28.836	0.26046	28.614	28.525	28.786	-0.22195					9	4	3	0	0	0	0.54124	1	10485	10485		41.956	32.412	1	4175500			38587	4162	24782	24906	37139	37139					-0.11453572083405561
YAFGDELYV	9	Unmodified	_YAFGDELYV_					0	0	0			REV__ENST00000490313.1_1_6:57244770-57299810:+|nuORF	REV__ENST00000490313.1_1_6:57244770-57299810:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1077.4971923828125	1	1076.4935	1075.48623	0.45954	0.00049469	0.20825	0.00022418	0.66779	0.00071887	1076.4937950975386	54.82	0.20531	54.632	54.509	54.714	-0.18797					8	3	3	0	0	0	0.36396	1	21137	21137		24.674	6.5389	1	36351000	+		38588	12476	24783	24907	37140	37140					-0.04849644921910112
YAGAEASG	8	Unmodified	_YAGAEASG_					0	0	0		ENST00000469825.1_1_3:169621639-169621999:-|nuORF	ENST00000469825.1_1_3:169621639-169621999:-|nuORF	ENST00000469825.1_1_3:169621639-169621999:-|nuORF	MSMS	HCT116MG_D190212_S2	2	363.1593017578125	2	363.158668	724.302784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.806	1	62.677	62.177	63.177	-0.12924								0	0	0	0.8837	1	24348	24348		0.79363	0	1				38589	8142	24784	24908	37141	37141					-0.07039573912891228
YAGAEASG	8	Unmodified	_YAGAEASG_					0	0	0		ENST00000469825.1_1_3:169621639-169621999:-|nuORF	ENST00000469825.1_1_3:169621639-169621999:-|nuORF	ENST00000469825.1_1_3:169621639-169621999:-|nuORF	MSMS	HCT116MG_D190212_S2	2	363.16815185546875	2	363.158668	724.302784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.018	1	62.889	62.389	63.389	-0.12924								0	0	0	0.8837	1	24433	24433		0.79363	0	1				38590	8142	24784	24908	37142	37142					-0.07039573912891228
YAGAVRRRLA	10	Unmodified	_YAGAVRRRLA_					0	0	0		ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	566.8386840820312	2	566.838531	1131.66251	0.46832	0.00026546	-0.50834	-0.00028815	-0.040021	-2.2685E-05	566.8379861218364	53.448	0.61831	53.448	53.204	53.822	0					17	11	2	0	0	0	0.82332	1	20567	20567		10.074	1.4806	1	9749000			38591	8018	24785	24909	37143	37143					0.10194453822577998
YAGAVRRRLA	10	Unmodified	_YAGAVRRRLA_					0	0	0		ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	566.838531	1131.66251	0.32163	0.00018231	-0.81664	-0.0004629	-0.49501	-0.00028059	566.8378511427231	53.694	0.82387	53.505	53.121	53.945	-0.1894	-0.13446	0.00011914	NaN	10.074	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75599000			38592	8018	24785	24909							0.10194453822577998
YAGAVRRRLA	10	Unmodified	_YAGAVRRRLA_					0	0	0		ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	566.838531	1131.66251	0.37554	0.00021287	-1.2437	-0.000705	-0.8682	-0.00049213	566.8377911346046	54.108	0.46914	53.809	53.613	54.082	-0.29946	0.1695	-0.00036506	NaN	10.074	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3567100			38593	8018	24785	24909							0.10194453822577998
YAGAVRRRLA	10	Unmodified	_YAGAVRRRLA_					0	0	0		ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	566.838531	1131.66251	0.50245	0.00028481	-1.094	-0.00062012	-0.59155	-0.00033531	566.8377818491252	54.125	0.78141	53.795	53.457	54.239	-0.32923	0.15646	-0.0001953	NaN	10.074	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10626000			38594	8018	24785	24909							0.10194453822577998
YAGEDCGEEVP	11	Carbamidomethyl (C)	_YAGEDC(Carbamidomethyl (C))GEEVP_	YAGEDC(1)GEEVP		YAGEDC(42)GEEVP		0	1	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.E2633Sfs*2|1|0.06|ENSG00000168477|chr6:32056832-32056832|C/-|frameshift_variant;TNXB|p.E2100Sfs*2|1|0.21|ENSG00000168477|chr6:32067907-32067907|C/-|frameshift_variant;TNXB|p.G2152Afs*46|1|0.18|ENSG00000168477|chr6:32067750-32067750|C/-|frameshift_variant	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	HCT116MG_D190212_S2	2	613.739501953125	2	613.237518	1224.46048	0.1852	0.00011357	0.62658	0.00038425	0.81179	0.00049782	613.7392550930803	30.515	0.25643	30.231	30.13	30.387	-0.28453					7	4	2	0	0	0	0.54229	1	11246	11246		41.84	27.001	1	22558000			38595	5012	24786	24910	37144	37144	26				-0.1427690722650823
YAIDRESDLD	10	Unmodified	_YAIDRESDLD_					0	0	0		CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant;ENSG00000149654|ENST00000537909|CDH22	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	CDH22|p.I579Sfs*4|1|0.33|ENSG00000149654|chr20:46178126-46178126|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	598.7747192382812	2	598.775125	1195.5357	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.374	1	11.092	10.592	11.592	-0.28186								0	0	0	0.96521	1	3661	3661		1.3295	0.13619	1				38596	384	24787	24911	37145	37145					-0.05424981703777121
YAKRRKSKLR	10	Unmodified	_YAKRRKSKLR_					0	0	0		ENST00000370331.5_1_1:93169133-93170263:-|nuORF	ENST00000370331.5_1_1:93169133-93170263:-|nuORF	ENST00000370331.5_1_1:93169133-93170263:-|nuORF	MSMS	HCT116MG_D190212_S3	3	653.5374755859375	2	653.414937	1304.81532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.823	1	52.517	52.017	53.017	-0.30639								0	0	0	0.96377	1	19978	19978		1.6526	0.58116	1				38597	7423	24788	24912	37146	37146					0.17510649219161678
YALAFGVP	8	Unmodified	_YALAFGVP_					0	0	0		nc|ENSG00000163406|Q16348-2|SLC15A2;SLC15A2|p.N718Tfs*2|1|0.11|ENSG00000163406|chr3:121940965-121940965|G/-|frameshift_variant;ENSG00000163406|ENST00000489711|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	MSMS	HCT116MG_D190212_S4	4	419.2276306152344	2	419.228897	836.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.263	1	47.896	47.396	48.396	-0.36728								0	0	0	0.8837	1	17869	17869		0.79363	0.10326	1				38598	4598	24789	24913	37147	37147					0.018476298113341727
YANELRRSEGN	11	Unmodified	_YANELRRSEGN_					0	0	0		nc|ENSG00000211715|A0A0A0MS03|TRBV5-3	nc|ENSG00000211715|A0A0A0MS03|TRBV5-3	nc|ENSG00000211715|A0A0A0MS03|TRBV5-3	MULTI-MSMS	HCT116MG_D190212_S1	1	655.3203125	2	654.81819	1307.62183	0.7688	0.00050342	0.12401	8.1205E-05	0.89281	0.00058463	655.3199487554898	15.145	0.261	15.145	15.014	15.275	0					6	4	2	0	0	0	0.74191	1	5045	5045		2.4985	2.4985	1	3082000			38599	9623	24790	24914	37148	37148					-0.01967977078356853
YANRRKKL	8	Unmodified	_YANRRKKL_					0	0	0		tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1	tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1	tr|U7SG28|U7SG28_FUSNUXaa-ProdipeptidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02309PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	350.2171630859375	3	350.217325	1047.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.971	1	34.585	34.085	35.085	-0.38606								0	0	0	0.8837	1	12790	12790		1.8442	0	1				38600	18295	24791	24915	37149	37149					0.1082366641956014
YANSGTGY	8	Unmodified	_YANSGTGY_					0	0	0		tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	tr|U7SS22|U7SS22_FUSNUVirB4familytypeIVsecretion/conjugaltransferATPaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01513PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	416.67706298828125	2	416.677225	831.339897	-0.14341	-5.9757E-05	0.057767	2.407E-05	-0.085647	-3.5687E-05	416.67718729950184	21.746	0.25982	21.361	21.219	21.479	-0.38503					6	4	2	0	0	0	0.74206	1	7688	7688		18.135	4.6271	1	9013600			38601	18407	24792	24916	37150	37150					-0.08251902367135244
YAPFYKKYDI	10	Unmodified	_YAPFYKKYDI_					0	0	0			REV__tr|U7SU50|U7SU50_FUSNUYjbRproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01100PE=4SV=1	REV__tr|U7SU50|U7SU50_FUSNUYjbRproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01100PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	436.5614318847656	3	436.560535	1306.65977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.504	1	31.504	31.004	32.004	0								0	0	0	0.93854	1	11594	11594		3.8763	1.7903	1		+		38602	17818	24793	24917	37151	37151					0.018711408543822472
YAQPPDVI	8	Unmodified	_YAQPPDVI_					0	0	0		ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	MSMS	HCT116MG_D190212_S1	1	451.7333068847656	2	451.734543	901.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.85	1	20.85	20.35	21.35	0								0	0	0	0.8837	1	7309	7309		6.3541	0	1				38603	4905	24794	24918	37152	37152					-0.0001359288519324764
YARLWKRLLRD	11	Unmodified	_YARLWKRLLRD_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MSMS	HCT116MG_D190212_S4	4	745.4437866210938	2	745.441152	1488.86775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.081	1	57.792	57.292	58.292	-0.28879								0	0	0	0.95023	1	21819	21819		6.2058	0.013936	1		+		38604	15981	24795	24919	37153	37153					0.14287187562126746
YATGPASHISP	11	Unmodified	_YATGPASHISP_					0	0	0		ENST00000573483.1_1_17:3785816-3788993:-|nuORF;CAMKK1|p.R457Tfs*8|1|0.39|ENSG00000004660|chr17:3865984-3865985|-/T|frameshift_variant;ENSG00000004660|ENST00000348335|CAMKK1;nc|ENSG00000004660|Q8N5S9-2|CAMKK1	ENST00000573483.1_1_17:3785816-3788993:-|nuORF	ENST00000573483.1_1_17:3785816-3788993:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	550.00244140625	2	550.772188	1099.52982	0.47224	0.0002601	-3.8169	-0.0021023	-3.3447	-0.0018422	550.7704939129359	43.647	0.20859	43.341	43.24	43.448	-0.30616					5	3	2	0	0	0	0.33325	1	16299	16299		24.021	13.197	1	1219100			38605	317	24796	24920	37154	37154					-0.015960354247454234
YAVRLRQAKRP	11	Unmodified	_YAVRLRQAKRP_					0	0	0			REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant	REV__NTHL1|p.P125Qfs*12|1|0.31|ENSG00000065057|chr16:2046132-2046132|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	679.4117431640625	2	679.412395	1356.81024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.006	1	47.69	47.19	48.19	-0.31596								0	0	0	0.95521	1	18044	18044		3.5965	1.7523	1		+		38606	10694	24797	24921	37155	37155					0.14610345356527432
YAVTKKIKK	9	Unmodified	_YAVTKKIKK_					0	0	0			REV__ENST00000461642.2_1_20:25470551-25477423:-|nuORF	REV__ENST00000461642.2_1_20:25470551-25477423:-|nuORF	MSMS	HCT116MG_D190212_S4	4	360.238037109375	3	360.237615	1077.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.552	1	61.297	60.797	61.797	-0.25557								0	0	0	0.77018	1	23224	23224		0.26902	0	1		+		38607	15785	24798	24922	37156	37156					0.15527758679127146
YCCCCFMG	8	Unmodified	_YCCCCFMG_					0	0	0			REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	HCT116MG_D190212_S3	3	465.1280212402344	2	465.127773	928.240993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.15202	1	0.21292	-0.28708	0.71292	0.060905								0	0	0	0.8837	1	60	60		0	0	1		+		38608	16067	24799	24923	37157	37157					-0.22599747515550916
YCCCCFMG	8	Unmodified	_YCCCCFMG_					0	0	0			REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	HCT116MG_D190212_S3	3	465.1281433105469	2	465.127773	928.240993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1253	1	9.1514	8.6514	9.6514	0.026101								0	0	0	0.8837	1	2754	2754		0	0	1		+		38609	16067	24799	24923	37158	37158					-0.22599747515550916
YCCCCLCC	8	Unmodified	_YCCCCLCC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	HCT116MG_D190212_S1	1	457.1119079589844	2	457.113809	912.213064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.275	1	30.275	29.775	30.775	0								0	0	0	0.8837	1	11097	11097		0	0	1				38610	1754	24800	24924	37159	37159					-0.246553937673184
YCCCCLCC	8	Unmodified	_YCCCCLCC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	HCT116MG_D190212_S3	3	457.1119689941406	2	457.113809	912.213064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.069	1	30.809	30.309	31.309	-0.26071								0	0	0	0.8837	1	11337	11337		0	0	1				38611	1754	24800	24924	37160	37160					-0.246553937673184
YCCCCLCC	8	Unmodified	_YCCCCLCC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	HCT116MG_D190212_S4	4	457.1123046875	2	457.113809	912.213064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.174	1	29.817	29.317	30.317	-0.3571								0	0	0	0.8837	1	10928	10928		0	0	1				38612	1754	24800	24924	37161	37161					-0.246553937673184
YCCCCLCC	8	Unmodified	_YCCCCLCC_					0	0	0		ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	ENSG00000101152|ENST00000360864|DNAJC5	MSMS	HCT116MG_D190212_S4	4	457.1121520996094	2	457.113809	912.213064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.972	1	30.607	30.107	31.107	-0.36416								0	0	0	0.8837	1	11221	11221		0	0	1				38613	1754	24800	24924	37162	37162					-0.246553937673184
YCCCPPPC	8	Unmodified	_YCCCPPPC_					0	0	0		ENST00000529601.5_1_11:64879440-64881038:+|nuORF	ENST00000529601.5_1_11:64879440-64881038:+|nuORF	ENST00000529601.5_1_11:64879440-64881038:+|nuORF	MSMS	HCT116MG_D190212_S4	4	443.1408386230469	2	443.141738	884.268923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.957	1	9.7577	9.2577	10.258	-0.1993								0	0	0	0.8837	1	3052	3052		0.79363	0	1				38614	8610	24801	24925	37163	37163					-0.17784101263828234
YCCCYQPCCQC	11	Unmodified	_YCCCYQPCCQC_					0	0	0			REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	MSMS	HCT116MG_D190212_S3	3	658.68798828125	2	658.6884	1315.36225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.652	1	12.715	12.215	13.215	0.06246								0	0	0	0.96208	1	3963	3963		0	0	1		+		38615	12440	24802	24926	37164	37164					-0.28281912935199216
YCETCCSKQEA	11	Unmodified	_YCETCCSKQEA_					0	0	0		nc|ENSG00000109189|P62068-2|USP46;ENST00000514536.5_1_4:53464769-53497293:-|nuORF;nc|ENSG00000109189|P62068-4|USP46;nc|ENSG00000109189|P62068-3|USP46;ENSG00000109189|ENST00000441222|USP46	nc|ENSG00000109189|P62068-2|USP46	nc|ENSG00000109189|P62068-2|USP46	MSMS	HCT116MG_D190212_S1	1	422.159912109375	3	422.159608	1263.45699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.596	1	63.596	63.096	64.096	0								0	0	0	0.9619	1	24567	24567		0.094841	0	1				38616	2199	24803	24927	37165	37165					-0.16419616596340347
YCFEILYKQR	10	Unmodified	_YCFEILYKQR_					0	0	0			REV__ZMYND12|p.T93A|1|0.39|ENSG00000066185|chr1:42448614-42448614|T/C|missense_variant	REV__ZMYND12|p.T93A|1|0.39|ENSG00000066185|chr1:42448614-42448614|T/C|missense_variant	MSMS	HCT116MG_D190212_S1	1	454.90093994140625	3	454.900674	1361.68019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.89	1	13.89	13.39	14.39	0								0	0	0	0.97045	1	4522	4522		0.15932	0	1		+		38617	10713	24804	24928	37166	37166					0.013819882425195829
YCGCEYGG	8	Unmodified	_YCGCEYGG_					0	0	0			REV__MEGF6|p.A1440Gfs*4|1|0.29|ENSG00000162591|chr1:3493839-3493840|-/C|frameshift_variant;REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	REV__MEGF6|p.R1079Gfs*195|1|0.36|ENSG00000162591|chr1:3498488-3498488|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	425.6521911621094	2	426.138564	850.262575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.552	1	11.6	11.1	12.1	0.04739								0	0	0	0.8837	1	3551	3551		0.69038	0.69038	1		+		38618	12881;17016	24805	24929	37167	37167					-0.16854579899325017
YCKVKGLLAA	10	Unmodified	_YCKVKGLLAA_					0	0	0		ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENSG00000187535|ENST00000426508|IFT140	ENST00000439987.6_1_16:1604037-1657279:-|nuORF	ENST00000439987.6_1_16:1604037-1657279:-|nuORF	MSMS	HCT116MG_D190212_S1	1	355.8766784667969	3	355.875689	1064.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.529	1	20.529	20.029	21.029	0								0	0	0	0.90475	1	7179	7179		12.873	0	1				38619	5942	24806	24930	37168	37168					0.07551850501954505
YCLPGGWG	8	Unmodified	_YCLPGGWG_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.D3347Tfs*10|1|0.36|ENSG00000198626|chr1:237708990-237708990|G/-|frameshift_variant;RYR2|p.S4583Lfs*11|1|0.45|ENSG00000198626|chr1:237792286-237792286|T/-|frameshift_variant	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	HCT116MG_D190212_S3	3	852.3710327148438	1	852.370886	851.36361	0.76667	0.00065349	0.57262	0.00048808	1.3393	0.0011416	852.3708381745785	14.825	0.2082	14.908	14.778	14.986	0.083271					6	3	2	0	0	0	0.88026	1	4819	4819		0	0	1	1289600			38620	6246	24807	24931	37169	37169					-0.06801760134305823
YCMHKFLLK	9	Unmodified	_YCMHKFLLK_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MSMS	HCT116MG_D190212_S1	1	394.87786865234375	3	394.876924	1181.60894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.36774	1	0.36774	-0.13226	0.86774	0								0	0	0	0.76995	1	122	122		1.0715	0	1		+		38621	11153	24808	24932	37170	37170					0.025401970041684763
YCMHKFLLK	9	Unmodified	_YCMHKFLLK_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MSMS	HCT116MG_D190212_S1	1	394.87762451171875	3	394.876924	1181.60894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8333	1	2.8333	2.3333	3.3333	0								0	0	0	0.77018	1	851	851		0.26902	0	1		+		38622	11153	24808	24932	37171	37171					0.025401970041684763
YCMHKFLLK	9	Unmodified	_YCMHKFLLK_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MSMS	HCT116MG_D190212_S1	1	394.8779602050781	3	394.876924	1181.60894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6622	1	4.6622	4.1622	5.1622	0								0	0	0	0.76995	1	1397	1397		1.0715	0	1		+		38623	11153	24808	24932	37172	37172					0.025401970041684763
YCMHKFLLK	9	Unmodified	_YCMHKFLLK_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MSMS	HCT116MG_D190212_S1	1	394.87750244140625	3	394.876924	1181.60894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2165	1	7.2165	6.7165	7.7165	0								0	0	0	0.76995	1	2178	2178		1.0715	0	1		+		38624	11153	24808	24932	37173	37173					0.025401970041684763
YCMHKFLLK	9	Unmodified	_YCMHKFLLK_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MSMS	HCT116MG_D190212_S1	1	394.8774719238281	3	394.876924	1181.60894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.3495	1	8.3495	7.8495	8.8495	0								0	0	0	0.76995	1	2522	2522		1.0715	0	1		+		38625	11153	24808	24932	37174	37174					0.025401970041684763
YCMHKFLLK	9	Unmodified	_YCMHKFLLK_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MSMS	HCT116MG_D190212_S4	4	394.87762451171875	3	394.876924	1181.60894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4837	1	5.2195	4.7195	5.7195	-0.26414								0	0	0	0.77018	1	1674	1674		0.26902	0	1		+		38626	11153	24808	24932	37175	37175					0.025401970041684763
YCMHKFLLK	9	Unmodified	_YCMHKFLLK_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MSMS	HCT116MG_D190212_S4	4	394.877685546875	3	394.876924	1181.60894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.692	1	64.46	63.96	64.96	-0.2319								0	0	0	0.76995	1	24328	24328		1.0715	0	1		+		38627	11153	24808	24932	37176	37176					0.025401970041684763
YCSAMSSSCLY	11	Unmodified	_YCSAMSSSCLY_					0	0	0			REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	REV__DNHD1|p.T4259Pfs*33|2|0.33|ENSG00000179532|chr11:6568772-6568772|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	607.7305908203125	2	607.72996	1213.44537	0.64278	0.00039064	1.2029	0.00073102	1.8456	0.0011217	607.7304954552262	17.093	0.26048	16.743	16.613	16.873	-0.34933					9	4	3	0	0	0	0.73536	1	5808	5808		8.7454	8.7454	1	16355000	+		38628	10396	24809	24933	37177	37177					-0.15281813619685636
YCWRKIWK	8	Unmodified	_YCWRKIWK_					0	0	0		ENST00000312475.4_1_15:89008823-89008904:-|nuORF	ENST00000312475.4_1_15:89008823-89008904:-|nuORF	ENST00000312475.4_1_15:89008823-89008904:-|nuORF	MSMS	HCT116MG_D190212_S2	2	394.8777770996094	3	394.879545	1181.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.93	1	64.818	64.318	65.318	-0.11256								0	0	0	0.8837	1	25088	25088		0.45834	0	1				38629	7066	24810	24934	37178	37178					0.03326092315933238
YCWRKIWK	8	Unmodified	_YCWRKIWK_					0	0	0		ENST00000312475.4_1_15:89008823-89008904:-|nuORF	ENST00000312475.4_1_15:89008823-89008904:-|nuORF	ENST00000312475.4_1_15:89008823-89008904:-|nuORF	MSMS	HCT116MG_D190212_S4	4	394.8780212402344	3	394.879545	1181.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.0677	1	2.8031	2.3031	3.3031	-0.26456								0	0	0	0.8837	1	939	939		0.45834	0	1				38630	7066	24810	24934	37179	37179					0.03326092315933238
YCWRKIWK	8	Unmodified	_YCWRKIWK_					0	0	0		ENST00000312475.4_1_15:89008823-89008904:-|nuORF	ENST00000312475.4_1_15:89008823-89008904:-|nuORF	ENST00000312475.4_1_15:89008823-89008904:-|nuORF	MSMS	HCT116MG_D190212_S4	4	394.8775329589844	3	394.879545	1181.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.7018	1	8.4811	7.9811	8.9811	-0.22071								0	0	0	0.8837	1	2658	2658		1.6526	0.58116	1				38631	7066	24810	24934	37180	37180					0.03326092315933238
YDALWKLHCD	10	Unmodified	_YDALWKLHCD_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2;REV__nc|ENSG00000184347|O75094-3|SLIT3	REV__nc|ENSG00000184347|O75094-3|SLIT3	MULTI-SECPEP	HCT116MG_D190212_S2	2	631.8145141601562	2	632.294973	1262.57539	0.69583	0.00043997	-0.76931	-0.00048643	-0.073474	-4.6457E-05	632.2943185555147	44.802	0.20686	44.717	44.639	44.846	-0.084797					5	3	2	0	0	0	0.30656	1	17058	17058		15.248	14.177	1	7541300	+		38632	12442;13792	24811	24935	37181	37181					-0.04539133234015935
YDALWKLHCD	10	Unmodified	_YDALWKLHCD_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2;REV__nc|ENSG00000184347|O75094-3|SLIT3	REV__nc|ENSG00000184347|O75094-3|SLIT3	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	632.294973	1262.57539	0.58366	0.00036905	-0.9202	-0.00058184	-0.33654	-0.00021279	632.2941459942438	44.49	0.21156	44.49	44.357	44.568	0	-0.20578	0.00023062	NaN	15.248	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12083000	+		38633	12442;13792	24811	24935							-0.04539133234015935
YDDDDDDDDD	10	Unmodified	_YDDDDDDDDD_					0	0	0			REV__ENSG00000273841|ENST00000217893|TAF9	REV__ENSG00000273841|ENST00000217893|TAF9	MSMS	HCT116MG_D190212_S1	1	609.1651611328125	2	609.165467	1216.31638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.583	1	25.583	25.083	26.083	0								0	0	0	0.97116	1	9209	9209		0	0	1		+		38634	14449	24812	24936	37182	37182					-0.28312502243602466
YDDDDDDDWD	10	Unmodified	_YDDDDDDDWD_					0	0	0		RIOK1|p.D69dup|1|0.29|ENSG00000124784|chr6:7393214-7393215|-/ATG|inframe_insertion	RIOK1|p.D69dup|1|0.29|ENSG00000124784|chr6:7393214-7393215|-/ATG|inframe_insertion	RIOK1|p.D69dup|1|0.29|ENSG00000124784|chr6:7393214-7393215|-/ATG|inframe_insertion	MSMS	HCT116MG_D190212_S3	3	430.1283874511719	3	430.130193	1287.36875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.443	1	52.136	51.636	52.636	-0.30639								0	0	0	0.97045	1	19825	19825		0.15932	0.064481	1				38635	18110	24813	24937	37183	37183					-0.26343919110013303
YDEDFEDDD	9	Unmodified	_YDEDFEDDD_					0	0	0		HBS1L|p.G196Dfs*40|1|0.3|ENSG00000112339|chr6:134997611-134997611|T/-|frameshift_variant;nc|ENSG00000112339|Q9Y450-2|HBS1L;nc|ENSG00000112339|Q9Y450-4|HBS1L;ENSG00000112339|ENST00000367837|HBS1L	HBS1L|p.G196Dfs*40|1|0.3|ENSG00000112339|chr6:134997611-134997611|T/-|frameshift_variant	HBS1L|p.G196Dfs*40|1|0.3|ENSG00000112339|chr6:134997611-134997611|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	388.1275329589844	3	388.128013	1161.36221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0137	1	7.7825	7.2825	8.2825	-0.23116								0	0	0	0.77019	1	2511	2511		0.23584	0	1				38636	2342	24814	24938	37184	37184					-0.21201812270692244
YDFLKRLSNE	10	Unmodified	_YDFLKRLSNE_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MSMS	HCT116MG_D190212_S4	4	428.8913879394531	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.06	1	62.816	62.316	63.316	-0.24392								0	0	0	0.97116	1	23807	23807		0	0	1				38637	4121	24815	24939	37185	37185					0.020521672179484085
YDFVTERWR	9	Unmodified	_YDFVTERWR_					0	0	0			REV__ENST00000487919.5_1_2:36785633-36788595:-|nuORF	REV__ENST00000487919.5_1_2:36785633-36788595:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	424.70379638671875	3	424.543767	1270.60947	0.076976	3.268E-05	-0.50398	-0.00021396	-0.42701	-0.00018128	424.54353010093905	19.005	0.31184	19.075	18.927	19.239	0.069159					7	5	2	0	0	0	0.26615	1	6477	6477		3.8763	0	1	3214100	+		38638	16010	24816	24940	37186	37186					-0.01500968750769971
YDGDGDDE	8	Unmodified	_YDGDGDDE_					0	0	0			REV__ENSG00000204859|ENST00000377674|ZBTB48	REV__ENSG00000204859|ENST00000377674|ZBTB48	MSMS	HCT116MG_D190212_S3	3	443.1410217285156	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1569	1	1.2178	0.71781	1.7178	0.060905								0	0	0	0.8837	1	363	363		0	0	1		+		38639	14210	24817	24941	37187	37187					-0.17957700951217248
YDGDGDDE	8	Unmodified	_YDGDGDDE_					0	0	0			REV__ENSG00000204859|ENST00000377674|ZBTB48	REV__ENSG00000204859|ENST00000377674|ZBTB48	MSMS	HCT116MG_D190212_S4	4	443.1411437988281	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.8958	1	7.6543	7.1543	8.1543	-0.24153								0	0	0	0.8837	1	2415	2415		0	0	1		+		38640	14210	24817	24941	37188	37188					-0.17957700951217248
YDGDGDDE	8	Unmodified	_YDGDGDDE_					0	0	0			REV__ENSG00000204859|ENST00000377674|ZBTB48	REV__ENSG00000204859|ENST00000377674|ZBTB48	MSMS	HCT116MG_D190212_S4	4	443.1410827636719	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4194	1	8.1879	7.6879	8.6879	-0.23148								0	0	0	0.8837	1	2574	2574		0	0	1		+		38641	14210	24817	24941	37189	37189					-0.17957700951217248
YDGDGDDE	8	Unmodified	_YDGDGDDE_					0	0	0			REV__ENSG00000204859|ENST00000377674|ZBTB48	REV__ENSG00000204859|ENST00000377674|ZBTB48	MSMS	HCT116MG_D190212_S4	4	443.1409912109375	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9238	1	8.7031	8.2031	9.2031	-0.22071								0	0	0	0.8837	1	2730	2730		0	0	1		+		38642	14210	24817	24941	37190	37190					-0.17957700951217248
YDGDGDDE	8	Unmodified	_YDGDGDDE_					0	0	0			REV__ENSG00000204859|ENST00000377674|ZBTB48	REV__ENSG00000204859|ENST00000377674|ZBTB48	MSMS	HCT116MG_D190212_S4	4	443.14105224609375	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.58	1	13.418	12.918	13.918	-0.16233								0	0	0	0.8837	1	4266	4266		0	0	1		+		38643	14210	24817	24941	37191	37191					-0.17957700951217248
YDGDGDDE	8	Unmodified	_YDGDGDDE_					0	0	0			REV__ENSG00000204859|ENST00000377674|ZBTB48	REV__ENSG00000204859|ENST00000377674|ZBTB48	MSMS	HCT116MG_D190212_S4	4	443.14056396484375	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.101	1	13.94	13.44	14.44	-0.16089								0	0	0	0.8837	1	4452	4452		0	0	1		+		38644	14210	24817	24941	37192	37192					-0.17957700951217248
YDGGSAVQSY	10	Unmodified	_YDGGSAVQSY_					0	0	0		nc|ENSG00000065534|Q15746-9|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK	nc|ENSG00000065534|Q15746-9|MYLK	nc|ENSG00000065534|Q15746-9|MYLK	MSMS	HCT116MG_D190212_S3	3	523.7267456054688	2	523.724904	1045.43525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.486	1	40.184	39.684	40.684	-0.30161								0	0	0	0.92607	1	15032	15032		10.074	0	1				38645	1160	24818	24942	37193	37193					-0.08564593966730172
YDKTKKLLL	9	Unmodified	_YDKTKKLLL_					0	0	0			REV__ENSG00000154007|ENST00000284142|ASB17	REV__ENSG00000154007|ENST00000284142|ASB17	MSMS	HCT116MG_D190212_S1	1	561.3486328125	2	561.350074	1120.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.152	1	45.152	44.652	45.652	0								0	0	0	0.7689	1	17100	17100		4.756	0.42677	1		+		38646	12667	24819	24943	37194	37194					0.13008035096663662
YDLDDLYW	8	Unmodified	_YDLDDLYW_					0	0	0		tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	tr|U7T3J0|U7T3J0_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00426PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	368.1636657714844	3	368.16244	1101.46549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.037	1	30.037	29.537	30.537	0								0	0	0	0.8837	1	11001	11001		1.8442	0	1				38647	18601	24820	24944	37195	37195					-0.08118235301571985
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.68598	1	0.68598	0.18598	1.186	0								0	0	0	0.8837	1	217	217		0	0	1				38648	2502	24821	24945	37196	37196					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1597290039062	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7631	1	1.7631	1.2631	2.2631	0								0	0	0	0.8837	1	534	534		0	0	1				38649	2502	24821	24945	37197	37197					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1593017578125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2831	1	2.2831	1.7831	2.7831	0								0	0	0	0.8837	1	690	690		0	0	1				38650	2502	24821	24945	37198	37198					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.159912109375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8175	1	2.8175	2.3175	3.3175	0								0	0	0	0.8837	1	847	847		0	0	1				38651	2502	24821	24945	37199	37199					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.385	1	4.385	3.885	4.885	0								0	0	0	0.8837	1	1322	1322		0	0	1				38652	2502	24821	24945	37200	37200					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.4526	1	5.4526	4.9526	5.9526	0								0	0	0	0.8837	1	1644	1644		0	0	1				38653	2502	24821	24945	37201	37201					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1594848632812	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9532	1	5.9532	5.4532	6.4532	0								0	0	0	0.8837	1	1795	1795		0	0	1				38654	2502	24821	24945	37202	37202					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1593017578125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4935	1	6.4935	5.9935	6.9935	0								0	0	0	0.8837	1	1956	1956		0	0	1				38655	2502	24821	24945	37203	37203					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0029	1	7.0029	6.5029	7.5029	0								0	0	0	0.8837	1	2116	2116		0	0	1				38656	2502	24821	24945	37204	37204					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1597290039062	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.505	1	7.505	7.005	8.005	0								0	0	0	0.8837	1	2269	2269		0	0	1				38657	2502	24821	24945	37205	37205					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0177	1	8.0177	7.5177	8.5177	0								0	0	0	0.8837	1	2419	2419		0	0	1				38658	2502	24821	24945	37206	37206					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1597290039062	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5404	1	8.5404	8.0404	9.0404	0								0	0	0	0.8837	1	2579	2579		0	0	1				38659	2502	24821	24945	37207	37207					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1593017578125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.6296	1	9.6296	9.1296	10.13	0								0	0	0	0.8837	1	2923	2923		0	0	1				38660	2502	24821	24945	37208	37208					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.16015625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.144	1	10.144	9.6438	10.644	0								0	0	0	0.8837	1	3099	3099		0	0	1				38661	2502	24821	24945	37209	37209					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.715	1	12.715	12.215	13.215	0								0	0	0	0.8837	1	4096	4096		0	0	1				38662	2502	24821	24945	37210	37210					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1597290039062	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.577	1	13.577	13.077	14.077	0								0	0	0	0.8837	1	4415	4415		0	0	1				38663	2502	24821	24945	37211	37211					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1598510742188	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.115	1	63.115	62.615	63.615	0								0	0	0	0.8837	1	24383	24383		0	0	1				38664	2502	24821	24945	37212	37212					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1594848632812	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.647	1	63.647	63.147	64.147	0								0	0	0	0.8837	1	24587	24587		0	0	1				38665	2502	24821	24945	37213	37213					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.193	1	64.193	63.693	64.693	0								0	0	0	0.8837	1	24771	24771		0	0	1				38666	2502	24821	24945	37214	37214					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S1	1	517.159912109375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.756	1	64.756	64.256	65.256	0								0	0	0	0.8837	1	24961	24961		0	0	1				38667	2502	24821	24945	37215	37215					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1936	1	1.1873	0.68733	1.6873	-0.0062599								0	0	0	0.8837	1	388	388		0	0	1				38668	2502	24821	24945	37216	37216					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2856	1	2.2613	1.7613	2.7613	-0.024288								0	0	0	0.8837	1	746	746		0	0	1				38669	2502	24821	24945	37217	37217					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8102	1	2.7699	2.2699	3.2699	-0.040353								0	0	0	0.8837	1	902	902		0	0	1				38670	2502	24821	24945	37218	37218					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1588745117188	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3181	1	3.256	2.756	3.756	-0.062129								0	0	0	0.8837	1	1061	1061		0	0	1				38671	2502	24821	24945	37219	37219					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1597290039062	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.8267	1	3.7645	3.2645	4.2645	-0.062129								0	0	0	0.8837	1	1216	1216		0	0	1				38672	2502	24821	24945	37220	37220					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1602172851562	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3734	1	5.2252	4.7252	5.7252	-0.14816								0	0	0	0.8837	1	1700	1700		0	0	1				38673	2502	24821	24945	37221	37221					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.159423828125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.888	1	5.7134	5.2134	6.2134	-0.17458								0	0	0	0.8837	1	1868	1868		0	0	1				38674	2502	24821	24945	37222	37222					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4139	1	6.2393	5.7393	6.7393	-0.17458								0	0	0	0.8837	1	2024	2024		0	0	1				38675	2502	24821	24945	37223	37223					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9514	1	6.7541	6.2541	7.2541	-0.19725								0	0	0	0.8837	1	2188	2188		0	0	1				38676	2502	24821	24945	37224	37224					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.159423828125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4633	1	7.2475	6.7475	7.7475	-0.21581								0	0	0	0.8837	1	2342	2342		0	0	1				38677	2502	24821	24945	37225	37225					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1593017578125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9699	1	7.7387	7.2387	8.2387	-0.23116								0	0	0	0.8837	1	2497	2497		0	0	1				38678	2502	24821	24945	37226	37226					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1605224609375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.5415	1	9.2864	8.7864	9.7864	-0.25508								0	0	0	0.8837	1	2985	2985		0	0	1				38679	2502	24821	24945	37227	37227					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1600952148438	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.073	1	9.8078	9.3078	10.308	-0.26472								0	0	0	0.8837	1	3169	3169		0	0	1				38680	2502	24821	24945	37228	37228					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1597900390625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.693	1	10.419	9.9191	10.919	-0.27365								0	0	0	0.8837	1	3399	3399		0	0	1				38681	2502	24821	24945	37229	37229					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.15966796875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.031	1	12.729	12.229	13.229	-0.30177								0	0	0	0.8837	1	4265	4265		0	0	1				38682	2502	24821	24945	37230	37230					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1597290039062	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.569	1	13.264	12.764	13.764	-0.30453								0	0	0	0.8837	1	4438	4438		0	0	1				38683	2502	24821	24945	37231	37231					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.125	1	13.813	13.313	14.313	-0.31202								0	0	0	0.8837	1	4611	4611		0	0	1				38684	2502	24821	24945	37232	37232					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.159912109375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.519	1	63.396	62.896	63.896	-0.12264								0	0	0	0.8837	1	24620	24620		0	0	1				38685	2502	24821	24945	37233	37233					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S2	2	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.611	1	64.499	63.999	64.999	-0.11256								0	0	0	0.8837	1	24991	24991		0	0	1				38686	2502	24821	24945	37234	37234					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.12376	1	0.18467	-0.31533	0.68467	0.060905								0	0	0	0.8837	1	49	49		0	0	1				38687	2502	24821	24945	37235	37235					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1600341796875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.6487	1	0.70961	0.20961	1.2096	0.060905								0	0	0	0.8837	1	210	210		0	0	1				38688	2502	24821	24945	37236	37236					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1597290039062	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1995	1	1.2604	0.76037	1.7604	0.060905								0	0	0	0.8837	1	379	379		0	0	1				38689	2502	24821	24945	37237	37237					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1593627929688	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7204	1	1.7813	1.2813	2.2813	0.060905								0	0	0	0.8837	1	536	536		0	0	1				38690	2502	24821	24945	37238	37238					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.15966796875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2486	1	2.3039	1.8039	2.8039	0.055284								0	0	0	0.8837	1	690	690		0	0	1				38691	2502	24821	24945	37239	37239					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1592407226562	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7521	1	2.7974	2.2974	3.2974	0.045237								0	0	0	0.8837	1	840	840		0	0	1				38692	2502	24821	24945	37240	37240					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.159912109375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2586	1	3.3038	2.8038	3.8038	0.045237								0	0	0	0.8837	1	992	992		0	0	1				38693	2502	24821	24945	37241	37241					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1598510742188	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.8042	1	3.8406	3.3406	4.3406	0.036387								0	0	0	0.8837	1	1156	1156		0	0	1				38694	2502	24821	24945	37242	37242					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1593627929688	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8442	1	4.8667	4.3667	5.3667	0.022513								0	0	0	0.8837	1	1460	1460		0	0	1				38695	2502	24821	24945	37243	37243					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1592407226562	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3703	1	5.3877	4.8877	5.8877	0.017489								0	0	0	0.8837	1	1625	1625		0	0	1				38696	2502	24821	24945	37244	37244					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1597900390625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8716	1	5.8859	5.3859	6.3859	0.01438								0	0	0	0.8837	1	1779	1779		0	0	1				38697	2502	24821	24945	37245	37245					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.159423828125	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8972	1	6.9111	6.4111	7.4111	0.013901								0	0	0	0.8837	1	2088	2088		0	0	1				38698	2502	24821	24945	37246	37246					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1593627929688	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4449	1	7.4588	6.9588	7.9588	0.013901								0	0	0	0.8837	1	2251	2251		0	0	1				38699	2502	24821	24945	37247	37247					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1600952148438	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9766	1	8.9972	8.4972	9.4972	0.020599								0	0	0	0.8837	1	2716	2716		0	0	1				38700	2502	24821	24945	37248	37248					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.516	1	10.556	10.056	11.056	0.039975								0	0	0	0.8837	1	3188	3188		0	0	1				38701	2502	24821	24945	37249	37249					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.209	1	12.268	11.768	12.768	0.058846								0	0	0	0.8837	1	3791	3791		0	0	1				38702	2502	24821	24945	37250	37250					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.15966796875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.756	1	12.819	12.319	13.319	0.06246								0	0	0	0.8837	1	4002	4002		0	0	1				38703	2502	24821	24945	37251	37251					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.306	1	13.375	12.875	13.875	0.069158								0	0	0	0.8837	1	4211	4211		0	0	1				38704	2502	24821	24945	37252	37252					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.159912109375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.888	1	13.963	13.463	14.463	0.074899								0	0	0	0.8837	1	4434	4434		0	0	1				38705	2502	24821	24945	37253	37253					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.1597900390625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.553	1	62.33	61.83	62.83	-0.22315								0	0	0	0.8837	1	23896	23896		0	0	1				38706	2502	24821	24945	37254	37254					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S3	3	517.159912109375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.623	1	64.422	63.922	64.922	-0.2009								0	0	0	0.8837	1	24568	24568		0	0	1				38707	2502	24821	24945	37255	37255					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1586303710938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1838	1	0.91922	0.41922	1.4192	-0.26456								0	0	0	0.8837	1	368	368		0	0	1				38708	2502	24821	24945	37256	37256					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6984	1	1.4338	0.93382	1.9338	-0.26456								0	0	0	0.8837	1	521	521		0	0	1				38709	2502	24821	24945	37257	37257					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1589965820312	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2462	1	1.9816	1.4816	2.4816	-0.26456								0	0	0	0.8837	1	692	692		0	0	1				38710	2502	24821	24945	37258	37258					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1597900390625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7761	1	2.5116	2.0116	3.0116	-0.26456								0	0	0	0.8837	1	853	853		0	0	1				38711	2502	24821	24945	37259	37259					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.2859	1	3.0213	2.5213	3.5213	-0.26456								0	0	0	0.8837	1	1010	1010		0	0	1				38712	2502	24821	24945	37260	37260					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1591186523438	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.8024	1	3.5378	3.0378	4.0378	-0.26456								0	0	0	0.8837	1	1165	1165		0	0	1				38713	2502	24821	24945	37261	37261					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1598510742188	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3324	1	4.0678	3.5678	4.5678	-0.26456								0	0	0	0.8837	1	1330	1330		0	0	1				38714	2502	24821	24945	37262	37262					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1597900390625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8653	1	4.6007	4.1007	5.1007	-0.26456								0	0	0	0.8837	1	1493	1493		0	0	1				38715	2502	24821	24945	37263	37263					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1598510742188	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.9034	1	5.6419	5.1419	6.1419	-0.26151								0	0	0	0.8837	1	1806	1806		0	0	1				38716	2502	24821	24945	37264	37264					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4104	1	6.1535	5.6535	6.6535	-0.25684								0	0	0	0.8837	1	1961	1961		0	0	1				38717	2502	24821	24945	37265	37265					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1594848632812	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9338	1	6.6837	6.1837	7.1837	-0.25015								0	0	0	0.8837	1	2126	2126		0	0	1				38718	2502	24821	24945	37266	37266					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1593627929688	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4409	1	7.1994	6.6994	7.6994	-0.24153								0	0	0	0.8837	1	2277	2277		0	0	1				38719	2502	24821	24945	37267	37267					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1593627929688	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9506	1	7.7191	7.2191	8.2191	-0.23148								0	0	0	0.8837	1	2430	2430		0	0	1				38720	2502	24821	24945	37268	37268					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1593627929688	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.4575	1	8.226	7.726	8.726	-0.23148								0	0	0	0.8837	1	2585	2585		0	0	1				38721	2502	24821	24945	37269	37269					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1597290039062	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.9695	1	8.7488	8.2488	9.2488	-0.22071								0	0	0	0.8837	1	2743	2743		0	0	1				38722	2502	24821	24945	37270	37270					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1600341796875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.482	1	9.2723	8.7723	9.7723	-0.20971								0	0	0	0.8837	1	2899	2899		0	0	1				38723	2502	24821	24945	37271	37271					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1595458984375	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.9907	1	9.7914	9.2914	10.291	-0.1993								0	0	0	0.8837	1	3062	3062		0	0	1				38724	2502	24821	24945	37272	37272					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1598510742188	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.51	1	10.32	9.8203	10.82	-0.18973								0	0	0	0.8837	1	3224	3224		0	0	1				38725	2502	24821	24945	37273	37273					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.032	1	10.85	10.35	11.35	-0.18135								0	0	0	0.8837	1	3403	3403		0	0	1				38726	2502	24821	24945	37274	37274					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.3134155273438	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.571	1	11.39	10.89	11.89	-0.18135								0	0	0	0.8837	1	3576	3576		0	0	1				38727	2502	24821	24945	37275	37275					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.16015625	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.583	1	11.406	10.906	11.906	-0.17704								0	0	0	0.8837	1	3580	3580		0	0	1				38728	2502	24821	24945	37276	37276					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1588745117188	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.631	1	12.462	11.962	12.962	-0.16903								0	0	0	0.8837	1	3930	3930		0	0	1				38729	2502	24821	24945	37277	37277					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1598510742188	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.138	1	12.973	12.473	13.473	-0.16496								0	0	0	0.8837	1	4109	4109		0	0	1				38730	2502	24821	24945	37278	37278					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1597290039062	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.645	1	13.483	12.983	13.983	-0.16233								0	0	0	0.8837	1	4288	4288		0	0	1				38731	2502	24821	24945	37279	37279					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.171	1	14.01	13.51	14.51	-0.16089								0	0	0	0.8837	1	4476	4476		0	0	1				38732	2502	24821	24945	37280	37280					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1600341796875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.202	1	62.958	62.458	63.458	-0.24392								0	0	0	0.8837	1	23849	23849		0	0	1				38733	2502	24821	24945	37281	37281					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1591796875	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.729	1	63.49	62.99	63.99	-0.2389								0	0	0	0.8837	1	24023	24023		0	0	1				38734	2502	24821	24945	37282	37282					-0.20963274352425287
YDMDDDEM	8	Unmodified	_YDMDDDEM_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MSMS	HCT116MG_D190212_S4	4	517.1596069335938	2	517.15989	1032.30523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.771	1	64.539	64.039	65.039	-0.2319								0	0	0	0.8837	1	24354	24354		0	0	1				38735	2502	24821	24945	37283	37283					-0.20963274352425287
YDRRQHGP	8	Unmodified	_YDRRQHGP_					0	0	0			REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	514.7539672851562	2	514.754664	1027.49478	0.18183	9.3598E-05	-1.013	-0.00052143	-0.83115	-0.00042784	514.7539977159037	22.38	0.2607	22.38	22.198	22.459	0.00074577					7	4	2	0	0	0	0.77285	1	7875	7875		14.582	0.17631	1	4568500	+		38736	14767	24822	24946	37284	37284					-0.017872334420417246
YDSDLAVSY	9	Unmodified	_YDSDLAVSY_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	HCT116MG_D190212_S3	3	1032.4522705078125	1	1032.45203	1031.44476	0.42834	0.00044224	-0.060155	-6.2107E-05	0.36818	0.00038013	1032.4516826324946	36.628	0.26033	36.327	36.197	36.457	-0.30113					9	4	3	0	0	0	0.023611	1	13554	13554		92.822	7.4654	1	7472500			38737	2164	24823	24947	37285	37285					-0.0697082568121914
YDSDLAVSY	9	Unmodified	_YDSDLAVSY_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1032.45203	1031.44476	0.58561	0.00060461	-0.11304	-0.00011671	0.47257	0.0004879	1032.4517760984022	36.433	0.2075	36.305	36.226	36.434	-0.12799	-0.011346	-4.4476E-05	NaN	92.822	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9381000			38738	2164	24823	24947							-0.0697082568121914
YDTCCSQYY	9	Unmodified	_YDTCCSQYY_					0	0	0			REV__ENSG00000109072|ENST00000226218|VTN	REV__ENSG00000109072|ENST00000226218|VTN	MSMS	HCT116MG_D190212_S4	4	573.1978759765625	2	573.19935	1144.38415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.689	1	21.471	20.971	21.971	-0.21832								0	0	0	0.76669	1	7502	7502		12.532	1.7076	1		+		38739	11363	24824	24948	37286	37286					-0.18227002327466835
YDTDSETS	8	Unmodified	_YDTDSETS_					0	0	0		CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant;CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant;CUBN|p.N1904Tfs*7|1|0.22|ENSG00000107611|chr10:16938985-16938985|T/-|frameshift_variant	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	459.17236328125	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.297	1	10.033	9.5326	10.533	-0.26472								0	0	0	0.8837	1	3250	3250		0	0	1				38740	617	24825	24949	37287	37287					-0.13172554883010434
YDTDSETS	8	Unmodified	_YDTDSETS_					0	0	0		CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant;CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant;CUBN|p.N1904Tfs*7|1|0.22|ENSG00000107611|chr10:16938985-16938985|T/-|frameshift_variant	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	459.1722106933594	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1437	1	0.87918	0.37918	1.3792	-0.26456								0	0	0	0.8837	1	353	353		0	0	1				38741	617	24825	24949	37288	37288					-0.13172554883010434
YDTDSETS	8	Unmodified	_YDTDSETS_					0	0	0		CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant;CUBN|p.L2960Ffs*41|1|0.39|ENSG00000107611|chr10:16888438-16888442|AAGTC/-|frameshift_variant;CUBN|p.F3041Lfs*38|1|0.06|ENSG00000107611|chr10:16874487-16874488|-/GCTTTCTT|frameshift_variant;CUBN|p.V3542Cfs*18|1|0.17|ENSG00000107611|chr10:16828945-16828946|-/A|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.K1116Nfs*26|1|0.26|ENSG00000107611|chr10:17046076-17046076|T/-|frameshift_variant;CUBN|p.N1904Tfs*7|1|0.22|ENSG00000107611|chr10:16938985-16938985|T/-|frameshift_variant	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	CUBN|p.F2548Sfs*50|1|0.3|ENSG00000107611|chr10:16907570-16907570|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	459.1719055175781	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.7644	1	4.4999	3.9999	4.9999	-0.26456								0	0	0	0.8837	1	1459	1459		0	0	1				38742	617	24825	24949	37289	37289					-0.13172554883010434
YDTKGHNI	8	Unmodified	_YDTKGHNI_					0	0	0		tr|U7T3L9|U7T3L9_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00714PE=4SV=1	tr|U7T3L9|U7T3L9_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00714PE=4SV=1	tr|U7T3L9|U7T3L9_FUSNUAutotransporterdomain-containingprotein(Fragment)OS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00714PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	474.2341613769531	2	474.232699	946.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.362	1	33.362	32.862	33.862	0								0	0	0	0.75335	1	12344	12344		26.341	9.399	1				38743	18604	24826	24950	37290	37290					-0.024522626590396612
YDVYRIEVENT	11	Unmodified	_YDVYRIEVENT_					0	0	0			REV__ENSG00000121057|ENST00000337714|AKAP1	REV__ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	HCT116MG_D190212_S1	1	700.83837890625	2	700.838256	1399.66196	0.85475	0.00059904	-0.16238	-0.0001138	0.69237	0.00048524	700.8380511740918	45.843	0.26253	45.843	45.66	45.922	0					12	4	4	0	0	0	0.62391	1	17382	17382		32.786	12.371	1	34101000	+		38744	11705	24827	24951	37291	37291					-0.021884751984543982
YDVYRIEVENT	11	Unmodified	_YDVYRIEVENT_					0	0	0			REV__ENSG00000121057|ENST00000337714|AKAP1	REV__ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	HCT116MG_D190212_S2	2	700.8388671875	2	700.838256	1399.66196	0.79355	0.00055615	-0.63653	-0.00044611	0.15702	0.00011004	700.8380059814964	45.866	0.30829	45.765	45.658	45.966	-0.1014					8	5	2	0	0	0	0.62391	1	17492	17492		32.786	11.249	1	22419000	+		38745	11705	24827	24951	37292	37292					-0.021884751984543982
YDVYRIEVENT	11	Unmodified	_YDVYRIEVENT_					0	0	0			REV__ENSG00000121057|ENST00000337714|AKAP1	REV__ENSG00000121057|ENST00000337714|AKAP1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	700.838256	1399.66196	0.79355	0.00055615	-0.63653	-0.00044611	0.15702	0.00011004	700.8380059814964	45.866	0.30829	45.765	45.658	45.966	-0.1014	-0.02213	-0.00049772	NaN	32.786	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22419000	+		38746	11705	24827	24951							-0.021884751984543982
YDWERMPRWYF	11	Unmodified	_YDWERMPRWYF_					0	0	0		ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	MSMS	HCT116MG_D190212_S2	2	824.8716430664062	2	824.871911	1647.72927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.818	1	53.629	53.129	54.129	-0.1894								0	0	0	0.95954	1	20705	20705		1.3295	1.0225	1				38747	1062	24828	24952	37293	37293					-0.06868723468528515
YDYKTFAH	8	Unmodified	_YDYKTFAH_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-MSMS	HCT116MG_D190212_S3	3	522.7431030273438	2	522.742899	1043.47125	0.43277	0.00022623	-1.2606	-0.00065897	-0.82783	-0.00043274	523.243656893048	37.979	0.12996	37.678	37.6	37.729	-0.30137					7	4	2	0	0	0	0.86388	1	14048	14048		2.8892	1.045	1	7247000			38748	6423	24829	24953	37294	37294					-0.048750919992244235
YDYTHEEWPFY	11	Unmodified	_YDYTHEEWPFY_					0	0	0		ENST00000464225.5_1_22:51018165-51018656:-|nuORF;ENST00000489453.1_1_22:51018282-51018692:-|nuORF;ENSG00000100288|ENST00000406938|CHKB	ENST00000464225.5_1_22:51018165-51018656:-|nuORF	ENST00000464225.5_1_22:51018165-51018656:-|nuORF	MSMS	HCT116MG_D190212_S4	4	775.3154296875	2	775.317157	1548.61976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.999	1	33.615	33.115	34.115	-0.38426								0	0	0	0.95925	1	12397	12397		1.4819	0	1				38749	1684	24830	24954	37295	37295					-0.1326045060686738
YDYVFDWNMLK	11	Unmodified	_YDYVFDWNMLK_					0	0	0		ENST00000581108.5_1_17:80207265-80210400:-|nuORF;ENST00000442216.1_2_22:38693892-38696026:-|nuORF;ENST00000431611.5_2_22:38689311-38696738:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;CSNK1D|p.T344Hfs*26|1|0.26|ENSG00000141551|chr17:82249459-82249459|G/-|frameshift_variant;CSNK1D|p.R358Gfs*12|1|0.25|ENSG00000141551|chr17:82249000-82249000|G/-|frameshift_variant;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E	ENST00000581108.5_1_17:80207265-80210400:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MSMS	HCT116MG_D190212_S2	2	747.3446044921875	2	747.34212	1492.66969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.193	1	52.005	51.505	52.505	-0.18725								0	0	0	0.95636	1	20044	20044		2.9952	0	1				38750	8954;609	24831	24955	37296	37296					-0.05694039202558088
YEAPSLATGY	10	Unmodified	_YEAPSLATGY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1071.500732421875	1	1071.49932	1070.49204	0.5393	0.00057785	-0.29185	-0.00031272	0.24744	0.00026513	1071.4987226675016	41.955	0.31105	41.887	41.705	42.016	-0.068199					9	5	2	0	0	0	0.010342	1	15882	15882		147.06	90.882	1	38190000			38751	4411	24832	24956	37297	37297					-0.04038546410242816
YEAPSLATGY	10	Unmodified	_YEAPSLATGY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	536.2532958984375	2	536.253297	1070.49204	0.51636	0.0002769	-0.78436	-0.00042061	-0.268	-0.00014371	536.2530802359097	41.95	0.31105	41.881	41.705	42.016	-0.068199					12	5	3	0	0	0	0.042873	1	15883	15883		92.491	42.558	1	29347000			38752	4411	24832	24956	37298	37298					-0.04038546410242816
YEAPSLATGY	10	Unmodified	_YEAPSLATGY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1071.4984130859375	1	1071.49932	1070.49204	0.55199	0.00059146	-0.27411	-0.00029371	0.27788	0.00029775	1071.499111581625	42.213	0.2597	41.909	41.78	42.04	-0.30352					7	4	2	0	0	0	0.029196	1	15727	15727		103.75	65.774	1	4840800			38753	4411	24832	24956	37299	37299					-0.04038546410242816
YEAPSLATGY	10	Unmodified	_YEAPSLATGY_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	535.8087768554688	2	536.253297	1070.49204	0.50797	0.0002724	-0.12042	-6.4573E-05	0.38755	0.00020783	536.2534247408831	42.213	0.25957	41.909	41.728	41.987	-0.30352					10	4	3	0	0	0	0.21037	1	15714	15714		58.679	22.552	1	4849500			38754	4411	24832	24956	37300	37300					-0.04038546410242816
YECCECGKF	9	Unmodified	_YECCECGKF_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MSMS	HCT116MG_D190212_S1	1	541.1921997070312	2	541.193013	1080.37147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.478	1	40.478	39.978	40.978	0								0	0	0	0.76603	1	15215	15215		14.838	0	1				38755	5613	24833	24957	37301	37301					-0.1654973699137372
YECCECGKF	9	Unmodified	_YECCECGKF_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MULTI-MSMS	HCT116MG_D190212_S2	2	541.1936645507812	2	541.193013	1080.37147	0.65067	0.00035214	0.40544	0.00021942	1.0561	0.00057156	541.1932822771865	40.46	0.3105	40.391	40.209	40.519	-0.069626					11	5	3	0	0	0	0.43775	1	15277	15277		20.454	0	1	19774000			38756	5613	24833	24957	37302	37302					-0.1654973699137372
YECCECGKF	9	Unmodified	_YECCECGKF_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MULTI-MSMS	HCT116MG_D190212_S3	3	541.1932373046875	2	541.193013	1080.37147	0.57664	0.00031207	-0.4298	-0.00023261	0.14684	7.9469E-05	541.1927133456176	40.647	0.46898	40.345	40.215	40.684	-0.30161					13	8	2	0	0	0	0.33687	1	15104	15104		26.884	0	1	22486000			38757	5613	24833	24957	37303	37303					-0.1654973699137372
YECCECGKF	9	Unmodified	_YECCECGKF_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MULTI-MSMS	HCT116MG_D190212_S4	4	541.1931762695312	2	541.193013	1080.37147	0.48223	0.00026098	0.19103	0.00010338	0.67326	0.00036436	541.1929544629592	40.744	0.23585	40.366	40.234	40.47	-0.37828					9	4	3	0	0	0	0.33687	2	14975	14968;14975		26.884	0	1	5425000			38758	5613	24833	24957	37304;37305	37305					-0.1654973699137372
YEDGSIRIF	9	Unmodified	_YEDGSIRIF_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant;WDR3|p.K204Sfs*12|1|0.29|ENSG00000065183|chr1:117939505-117939505|A/-|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	HCT116MG_D190212_S1	1	550.275146484375	2	550.274564	1098.53457	0.4196	0.00023089	0.063313	3.4839E-05	0.48291	0.00026573	550.2745193904607	48.984	0.36279	48.984	48.768	49.131	0					14	6	3	0	0	0	0.0058997	1	18645	18645		129.77	82.024	1	59932000			38759	1151	24834	24958	37306	37306					-0.010751512820206699
YEDGSIRIF	9	Unmodified	_YEDGSIRIF_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant;WDR3|p.K204Sfs*12|1|0.29|ENSG00000065183|chr1:117939505-117939505|A/-|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	HCT116MG_D190212_S2	2	550.2744750976562	2	550.274564	1098.53457	0.39407	0.00021684	-0.035728	-1.966E-05	0.35834	0.00019718	550.2744918535022	49.013	0.45418	48.859	48.682	49.137	-0.15405					16	8	3	0	0	0	0.0080847	2	18738	18738;18796		118.07	79.893	1	226290000			38760	1151	24834	24958	37307;37308	37307					-0.010751512820206699
YEDGSIRIF	9	Unmodified	_YEDGSIRIF_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant;WDR3|p.K204Sfs*12|1|0.29|ENSG00000065183|chr1:117939505-117939505|A/-|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	HCT116MG_D190212_S3	3	550.2747192382812	2	550.274564	1098.53457	0.41678	0.00022934	0.31754	0.00017474	0.73432	0.00040408	550.2746584889205	49.265	0.42119	48.949	48.763	49.184	-0.31596					21	7	4	0	0	0	0.012596	1	18551	18551		106.94	72.538	1	42857000			38761	1151	24834	24958	37309	37309					-0.010751512820206699
YEDGSIRIF	9	Unmodified	_YEDGSIRIF_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;WDR3|p.A919Cfs*2|1|0.38|ENSG00000065183|chr1:117959363-117959364|-/T|frameshift_variant;WDR3|p.T410Ifs*46|1|0.05|ENSG00000065183|chr1:117943526-117943527|-/TAAATGTT|frameshift_variant;WDR3|p.K204Sfs*12|1|0.29|ENSG00000065183|chr1:117939505-117939505|A/-|frameshift_variant	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	HCT116MG_D190212_S4	4	550.2747192382812	2	550.274564	1098.53457	0.41047	0.00022587	-0.068856	-3.789E-05	0.34161	0.00018798	550.2744748807414	49.349	0.29677	48.986	48.869	49.166	-0.36232					10	5	3	0	0	0	0.045679	1	18311	18311		76.825	42.423	1	13339000			38762	1151	24834	24958	37310	37310					-0.010751512820206699
YEDWDCFK	8	Unmodified	_YEDWDCFK_					0	0	0		ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENST00000495407.1_1_10:121602688-121616909:-|nuORF	ENSG00000197771|ENST00000369077|MCMBP	ENSG00000197771|ENST00000369077|MCMBP	MSMS	HCT116MG_D190212_S1	1	553.2181396484375	2	553.2184	1104.42225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8409	1	5.8409	5.3409	6.3409	0								0	0	0	0.8837	1	1759	1759		0.69038	0	1				38763	6174	24835	24959	37311	37311					-0.1257874835050643
YEEEIKLLEE	10	Unmodified	_YEEEIKLLEE_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENSG00000198467|ENST00000645482|TPM2;CON__Q3SX28	nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	HCT116MG_D190212_S3	3	647.8231201171875	2	647.824283	1293.63401	0.63585	0.00041192	-2.6859	-0.00174	-2.0501	-0.0013281	647.822409634821	34.135	0.5206	33.841	33.507	34.027	-0.2942					18	9	3	0	0	0	0.78781	1	12560	12560		13.042	0.80181	1	6077200		+	38764	9605	24836	24960	37312	37312					-0.0010579817853795248
YEELWAHQGP	10	Unmodified	_YEELWAHQGP_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MSMS	HCT116MG_D190212_S1	1	410.52398681640625	3	410.524372	1228.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.056	1	43.056	42.556	43.556	0								0	0	0	0.95351	1	16256	16256		1.9064	0	1				38765	4346	24837	24961	37313	37313					-0.0538465039608127
YEEMLKEGY	9	Unmodified	_YEEMLKEGY_					0	0	0		ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	581.260498046875	2	581.260265	1160.50598	0.64014	0.00037209	-0.016084	-9.3492E-06	0.62406	0.00036274	581.2602035308321	36.013	0.2606	36.013	35.837	36.098	0					11	4	3	0	0	0	0.014023	1	13403	13403		103.42	63.462	1	23972000			38766	4627	24838	24962	37314	37314					-0.06785636973449982
YEEMLKEGY	9	Unmodified	_YEEMLKEGY_					0	0	0		ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	581.2605590820312	2	581.260265	1160.50598	0.84033	0.00048845	0.024875	1.4459E-05	0.86521	0.00050291	581.2601583665721	36.018	0.3619	35.89	35.761	36.122	-0.12799					14	6	4	0	0	0	0.0059958	1	13459	13459		128.93	86.977	1	85702000			38767	4627	24838	24962	37315	37315					-0.06785636973449982
YEEMLKEGY	9	Unmodified	_YEEMLKEGY_					0	0	0		ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	581.2601318359375	2	581.260265	1160.50598	0.35333	0.00020538	0.092504	5.3769E-05	0.44584	0.00025915	581.2601735917607	36.325	0.40054	35.94	35.673	36.074	-0.38558					13	7	3	0	0	0	0.02327	1	13302	13302		93.166	53.209	1	8429900			38768	4627	24838	24962	37316	37316					-0.06785636973449982
YEEMLKEGY	9	Oxidation (M)	_YEEM(Oxidation (M))LKEGY_		YEEM(1)LKEGY		YEEM(46)LKEGY	0	0	1		ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	589.25830078125	2	589.257722	1176.50089	0.60693	0.00035764	0.77772	0.00045828	1.3846	0.00081591	589.2581805710223	29.327	0.25951	28.978	28.825	29.085	-0.34921					7	4	2	0	0	0	0.16285	1	10596	10596		45.74	18.111	1	3353400			38769	4627	24838	24963	37317	37317		100			-0.0802994083608155
YEEMLKEGY	9	Oxidation (M)	_YEEM(Oxidation (M))LKEGY_					0	0	1		ENST00000512567.5_1_4:76407750-76419412:-|nuORF;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENSG00000163743|ENST00000324439|RCHY1	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	ENST00000512567.5_1_4:76407750-76419412:-|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	589.257722	1176.50089	0.86526	0.00050986	-0.27544	-0.0001623	0.58983	0.00034756	589.2572996465037	28.825	0.15662	28.825	28.694	28.851	0	-0.076822	-0.00096934	NaN	45.74	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4163900			38770	4627	24838	24963				100			-0.0802994083608155
YEERNYILGD	10	Unmodified	_YEERNYILGD_					0	0	0			REV__ENST00000435074.5_1_6:33080250-33086274:+|nuORF	REV__ENST00000435074.5_1_6:33080250-33086274:+|nuORF	MSMS	HCT116MG_D190212_S2	2	636.2986450195312	2	636.298767	1270.58298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.371	1	41.303	40.803	41.803	-0.068199								0	0	0	0.90892	1	15630	15630		13.906	1.6654	1		+		38771	15615	24839	24964	37318	37318					-0.041487024327807376
YEFDEDEEC	9	Unmodified	_YEFDEDEEC_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-MSMS	HCT116MG_D190212_S1	1	1178.3843994140625	1	1178.38303	1177.37575	0.54636	0.00064383	-0.063475	-7.4798E-05	0.48289	0.00056903	1178.3827670804137	18.606	0.5211	18.606	18.454	18.975	0					20	9	3	0	0	0	0.74607	1	6415	6415		2.0598	0	1	5481800			38772	4833	24840	24965	37319	37319					-0.20584277763123282
YEFDEDEEC	9	Unmodified	_YEFDEDEEC_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1178.38303	1177.37575	0.19593	0.00023088	0.20656	0.00024341	0.4025	0.0004743	1178.3830570605276	18.837	0.46893	18.474	18.269	18.738	-0.36325	-0.065924	0.00025567	NaN	2.0598	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3385700			38773	4833	24840	24965							-0.20584277763123282
YEFKGHSL	8	Unmodified	_YEFKGHSL_					0	0	0		TNKS2|p.Q337H|1|0.12|ENSG00000107854|chr10:91828313-91828313|A/C|missense_variant;TNKS2|p.K349Nfs*8|1|0.47|ENSG00000107854|chr10:91828344-91828344|A/-|frameshift_variant;TNKS|p.N555Kfs*2|1|0.29|ENSG00000173273|chr8:9710033-9710034|-/A|frameshift_variant;nc|ENSG00000173273|O95271-2|TNKS;TNKS2|p.N622Tfs*29|1|0.33|ENSG00000107854|chr10:91842189-91842189|A/-|frameshift_variant;ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	TNKS2|p.Q337H|1|0.12|ENSG00000107854|chr10:91828313-91828313|A/C|missense_variant	TNKS2|p.Q337H|1|0.12|ENSG00000107854|chr10:91828313-91828313|A/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	490.74603271484375	2	490.745442	979.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.363	1	31.114	30.614	31.614	-0.24883								0	0	0	0.76512	1	11567	11567		25.399	3.6527	1				38774	2132	24841	24966	37320	37320					-0.014227881366082329
YEGHVNEY	8	Unmodified	_YEGHVNEY_					0	0	0		nc|ENSG00000119599|Q8WV16-2|DCAF4;nc|ENSG00000119599|Q8WV16-4|DCAF4;nc|ENSG00000119599|Q8WV16-3|DCAF4;nc|ENSG00000119599|Q8WV16-5|DCAF4;ENSG00000119599|ENST00000358377|DCAF4	nc|ENSG00000119599|Q8WV16-2|DCAF4	nc|ENSG00000119599|Q8WV16-2|DCAF4	MULTI-SECPEP	HCT116MG_D190212_S2	2	505.7851257324219	2	505.714339	1009.41412	0.53878	0.00027247	-0.24558	-0.00012419	0.2932	0.00014828	505.7145636181906	23.842	0.15691	23.459	23.351	23.508	-0.38324					4	2	2	0	0	0	0.2951	1	8490	8490		24.021	3.1494	1	4366700			38775	9437	24842	24967	37321	37321					-0.09020559275620599
YEGQEVMV	8	Unmodified	_YEGQEVMV_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MSMS	HCT116MG_D190212_S3	3	954.4249267578125	1	954.42371	953.416433	0.83456	0.00079652	-0.42197	-0.00040274	0.41259	0.00039379	954.4232971876436	43.344	0.21894	43.039	42.918	43.137	-0.30472					6	4	2	0	0	0	0.41924	1	16198	16198		48.346	0	1	6701800			38776	4352	24843	24968	37322	37322					-0.06213846862158334
YEHIKNDKY	9	Unmodified	_YEHIKNDKY_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MSMS	HCT116MG_D190212_S1	1	605.2476806640625	2	605.29857	1208.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.215	1	18.215	17.715	18.715	0								0	0	0	0.14408	1	6248	6248		51.415	35.266	1				38777	3913	24844	24969	37323	37323					-0.01336077361952448
YEHRYVELF	9	Unmodified	_YEHRYVELF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MSMS	HCT116MG_D190212_S2	2	628.3087158203125	2	628.308938	1254.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.611	1	45.513	45.013	46.013	-0.097767								0	0	0	0.37224	1	17350	17350		34.932	6.4452	1				38778	5046	24845	24970	37324	37324					-0.013794869823186673
YEINAHKY	8	Unmodified	_YEINAHKY_					0	0	0		nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	nc|ENSG00000165055|Q6P1Q9-2|METTL2B	MSMS	HCT116MG_D190212_S2	2	519.2564086914062	2	519.256174	1036.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.644	1	25.275	24.775	25.775	-0.36914								0	0	0	0.76512	1	9243	9243		25.399	2.663	1				38779	1491	24846	24971	37325	37325					-0.01899403107904618
YEISHVKRLI	10	Unmodified	_YEISHVKRLI_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	MSMS	HCT116MG_D190212_S4	4	629.3719482421875	2	629.36933	1256.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.291	1	61.031	60.531	61.531	-0.2602								0	0	0	0.95507	1	23118	23118		3.5965	0.60125	1		+		38780	11737	24847	24972	37326	37326					0.106013407312048
YEITRVDRFY	10	Unmodified	_YEITRVDRFY_					0	0	0			REV__AGTR2|p.F179C|1|0.09|ENSG00000180772|chrX:116172816-116172816|T/G|missense_variant	REV__AGTR2|p.F179C|1|0.09|ENSG00000180772|chrX:116172816-116172816|T/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	681.345458984375	2	681.346052	1360.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.271	1	34.972	34.472	35.472	-0.29922								0	0	0	0.90892	1	13013	13013		13.906	1.6654	1		+		38781	9892	24848	24973	37327	37327					0.011638561092240707
YEKALAGG	8	Unmodified	_YEKALAGG_					0	0	0		ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	404.7135009765625	2	404.713611	807.412668	0.19621	7.9407E-05	-0.07255	-2.9362E-05	0.12365	5.0045E-05	404.71348800778276	33.545	0.30831	33.352	33.174	33.482	-0.19297					8	5	2	0	0	0	0.6854	1	12483	12483		24.674	0	1	12679000			38782	8924	24849	24974	37328	37328					0.001258514262758581
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	HCT116MG_D190212_S1	1	555.2824096679688	2	554.779679	1107.5448	0.42381	0.00023512	0.9154	0.00050785	1.3392	0.00074297	555.2817437726675	23.149	0.88561	23.149	22.533	23.418	0					48	16	4	0	0	0	0.031831	4	8245	8109;8138;8245;8320		84.522	21.949	1	117050000			38783	1586	24850	24975	37329;37330;37331;37332	37331					-0.004665883474444854
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	HCT116MG_D190212_S2	2	554.7799072265625	2	554.779679	1107.5448	0.32612	0.00018092	0.9958	0.00055245	1.3219	0.00073337	555.2817368847518	23.621	1.0385	23.238	22.78	23.819	-0.38324					61	19	5	0	0	0	0.056114	2	8341	8341;8442		71.708	9.1352	1	402190000			38784	1586	24850	24975	37333;37334	37333					-0.004665883474444854
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	HCT116MG_D190212_S2	2	1108.5533447265625	1	1108.55208	1107.5448	0.59166	0.00065589	0.98211	0.0010887	1.5738	0.0017446	1109.5558191448217	23.655	0.57143	23.272	22.936	23.508	-0.38324					20	10	3	0	0	0	0.037825	2	8494	8451;8494		80.676	31.122	1	19554000			38785	1586	24850	24975	37335;37336	37336					-0.004665883474444854
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	554.779679	1107.5448	0.34585	0.00019187	0.80805	0.00044829	1.1539	0.00064017	555.2818175687883	23.109	0.61271	23.069	22.679	23.291	-0.03968	-0.082753	-0.00014677	NaN	84.522	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12365000			38786	1586	24850	24975							-0.004665883474444854
YEKDSSVAA	9	Unmodified	_YEKDSSVAA_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S1	1	485.2298583984375	2	485.229822	968.445091	0.35525	0.00017238	0.067898	3.2946E-05	0.42315	0.00020532	485.22970997910323	17.908	0.2607	17.908	17.776	18.037	0					12	4	4	0	0	0	0.10482	1	6146	6146		57.249	17.292	1	16850000			38787	4899	24851	24976	37337	37337					-0.04039405961384546
YEKDSSVAA	9	Unmodified	_YEKDSSVAA_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S2	2	485.2298278808594	2	485.229822	968.445091	-0.15995	-7.7615E-05	0.397	0.00019264	0.23705	0.00011502	485.22990019616725	18.398	0.41814	18.035	17.799	18.217	-0.36325					19	7	4	0	0	0	0.032914	1	6322	6322		83.429	39.022	1	109410000			38788	4899	24851	24976	37338	37338					-0.04039405961384546
YEKDSSVAA	9	Unmodified	_YEKDSSVAA_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S2	2	969.4523315429688	1	969.452367	968.445091	0.2981	0.000289	0.0038071	3.6908E-06	0.30191	0.00029269	969.4522085336739	18.398	0.26132	18.035	17.904	18.165	-0.36325					10	4	3	0	0	0	0.032914	1	6335	6335		83.429	39.656	1	18957000			38789	4899	24851	24976	37339	37339					-0.04039405961384546
YEKDSSVAA	9	Unmodified	_YEKDSSVAA_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	HCT116MG_D190212_S3	3	485.2297668457031	2	485.229822	968.445091	-0.15725	-7.6301E-05	0.063333	3.0731E-05	-0.093915	-4.557E-05	485.22964711655914	17.525	0.41623	17.607	17.43	17.846	0.081358					16	7	4	0	0	0	0.12421	1	5896	5896		53.404	7.3831	1	18346000			38790	4899	24851	24976	37340	37340					-0.04039405961384546
YELIKPIILI	10	Unmodified	_YELIKPIILI_					0	0	0			REV__ENSG00000121270|ENST00000356608|ABCC11	REV__ENSG00000121270|ENST00000356608|ABCC11	MSMS	HCT116MG_D190212_S3	3	405.597900390625	3	405.596809	1213.7686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.416	1	55.124	54.624	55.624	-0.2918								0	0	0	0.96804	1	21020	21020		0.69767	0	1		+		38791	11712	24852	24977	37341	37341					0.17026351824665653
YELPDTKFEE	10	Unmodified	_YELPDTKFEE_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;NDC80|p.M480Wfs*7|2|0.3|ENSG00000080986|chr18:2601453-2601453|A/-|frameshift_variant	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MSMS	HCT116MG_D190212_S4	4	635.7955322265625	2	635.795526	1269.5765	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.758	1	29.409	28.909	29.909	-0.34921								0	0	0	0.93202	1	10760	10760		8.7454	0	1				38792	1405	24853	24978	37342	37342					-0.04750640384122562
YELYRRVTDF	10	Unmodified	_YELYRRVTDF_					0	0	0			REV__tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	REV__tr|U7T6E8|U7T6E8_FUSNUCysteine--tRNAligaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cysSPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	681.345703125	2	681.346052	1360.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.163	1	35.008	34.508	35.508	-0.15513								0	0	0	0.92272	1	13106	13106		10.824	0	1		+		38793	17996	24854	24979	37343	37343					0.011638561092240707
YENIIVHTY	9	Unmodified	_YENIIVHTY_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-MSMS	HCT116MG_D190212_S3	3	576.2900390625	2	576.290214	1150.56587	0.60057	0.0003461	-0.78521	-0.00045251	-0.18464	-0.0001064	576.2894932472263	40.73	0.20847	40.429	40.319	40.528	-0.30161					5	3	2	0	0	0	0.064006	1	15149	15149		67.838	29.864	1	4428300			38794	6318	24855	24980	37344	37344					-0.0033857824789720325
YENLIHVW	8	Unmodified	_YENLIHVW_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2747802734375	2	537.274367	1072.53418	0.43862	0.00023566	0.018492	9.9351E-06	0.45711	0.00024559	537.274321489148	54.16	0.2574	53.971	53.842	54.099	-0.1894					11	4	3	0	0	0	0.061239	1	20847	20847		111.29	62.941	1	82388000			38795	3150	24856	24981	37345	37345					0.0008147378882767953
YEPKPSPSEP	10	Unmodified	_YEPKPSPSEP_					0	0	0			REV__ENSG00000196132|ENST00000328439|MYT1	REV__ENSG00000196132|ENST00000328439|MYT1	MULTI-MSMS	HCT116MG_D190212_S1	1	565.7706298828125	2	565.771854	1129.52915	0.32285	0.00018266	-1.7324	-0.00098017	-1.4096	-0.00079751	566.2726870625052	23.162	0.41633	23.162	22.898	23.314	0					16	7	3	0	0	0	0.64492	1	8218	8218		24.991	2.2547	1	5566600	+		38796	14004	24857	24982	37346	37346					-0.030428748644681036
YEPKPSPSEP	10	Unmodified	_YEPKPSPSEP_					0	0	0			REV__ENSG00000196132|ENST00000328439|MYT1	REV__ENSG00000196132|ENST00000328439|MYT1	MULTI-MATCH	HCT116MG_D190212_S2	2		2	565.771854	1129.52915	0.45223	0.00025586	-1.4453	-0.00081774	-0.99312	-0.00056188	565.7705843127275	23.76	0.36421	23.377	23.091	23.456	-0.38324	0.10764	0.00015533	NaN	24.991	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6388500	+		38797	14004	24857	24982							-0.030428748644681036
YEQIVKAH	8	Unmodified	_YEQIVKAH_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40721871-40723618:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MSMS	HCT116MG_D190212_S2	2	494.2669982910156	2	494.266542	986.51853	0.45482	0.0002248	-0.62943	-0.0003111	-0.17461	-8.6304E-05	494.2665295253234	22.274	0.25953	21.889	21.739	21.999	-0.38521					7	4	2	0	0	0	0.34844	1	7905	7905		54.774	24.549	1	8721000			38798	2182	24858	24983	37347	37347					0.02473187271743882
YEQIVKAH	8	Unmodified	_YEQIVKAH_					0	0	0		nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40721871-40723618:+|nuORF	nc|ENSG00000108788|Q9UH92-2|MLX	nc|ENSG00000108788|Q9UH92-2|MLX	MULTI-MATCH	HCT116MG_D190212_S3	3		2	494.266542	986.51853	0.21503	0.00010628	0.46821	0.00023142	0.68324	0.0003377	494.2667255793681	21.596	0.21183	21.615	21.483	21.694	0.018446	-0.13716	0.00060145	NaN	54.774	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2176600			38799	2182	24858	24983							0.02473187271743882
YEREAILEY	9	Unmodified	_YEREAILEY_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000601340.5_1_19:50061444-50083809:-|nuORF;ENST00000600019.5_1_19:50060962-50063200:-|nuORF;ENST00000599425.5_1_19:50060962-50063306:-|nuORF;ENST00000598820.5_1_19:50061979-50083776:-|nuORF	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MSMS	HCT116MG_D190212_S1	1	593.292724609375	2	593.292953	1184.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.121	1	42.121	41.621	42.621	0								0	0	0	0.36226	1	15878	15878		35.612	14.075	1				38800	3763	24859	24984	37348	37348					-0.013548994561006111
YEREAILEY	9	Unmodified	_YEREAILEY_					0	0	0		ENSG00000142546|ENST00000596358|NOSIP;ENST00000601340.5_1_19:50061444-50083809:-|nuORF;ENST00000600019.5_1_19:50060962-50063200:-|nuORF;ENST00000599425.5_1_19:50060962-50063306:-|nuORF;ENST00000598820.5_1_19:50061979-50083776:-|nuORF	ENSG00000142546|ENST00000596358|NOSIP	ENSG00000142546|ENST00000596358|NOSIP	MULTI-MSMS	HCT116MG_D190212_S2	2	593.293212890625	2	593.292953	1184.57135	0.6585	0.00039068	0.03598	2.1347E-05	0.69448	0.00041203	593.2928478913615	42.007	0.31168	41.939	41.756	42.068	-0.068199					12	5	3	0	0	0	0.012531	2	15895	15863;15895		107.1	28.372	1	51651000			38801	3763	24859	24984	37349;37350	37350					-0.013548994561006111
YEREKKVW	8	Unmodified	_YEREKKVW_					0	0	0		nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1	nc|ENSG00000137601|Q96PY6-4|NEK1	nc|ENSG00000137601|Q96PY6-4|NEK1	MSMS	HCT116MG_D190212_S2	2	379.871826171875	3	379.873224	1136.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.088	1	15.754	15.254	16.254	-0.33451								0	0	0	0.8837	1	5391	5391		12.241	8.6536	1				38802	3492	24860	24985	37351	37351					0.035008342259061465
YERIINLRHFK	11	Unmodified	_YERIINLRHFK_					0	0	0		ALDH3A2|p.P358Afs*10|1|0.34|ENSG00000072210|chr17:19663458-19663459|-/A|frameshift_variant;ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000472059.5_1_17:19558694-19578882:+|nuORF;ENST00000476965.5_1_17:19559657-19578882:+|nuORF	ALDH3A2|p.P358Afs*10|1|0.34|ENSG00000072210|chr17:19663458-19663459|-/A|frameshift_variant	ALDH3A2|p.P358Afs*10|1|0.34|ENSG00000072210|chr17:19663458-19663459|-/A|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	496.95404052734375	3	496.952649	1487.83612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.508	1	42.204	41.704	42.704	-0.30352								0	0	0	0.95743	1	15837	15837		2.4348	0	1				38803	94	24861	24986	37352	37352					0.11171194808139262
YERRVGAP	8	Unmodified	_YERRVGAP_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MSMS	HCT116MG_D190212_S4	4	474.2549133300781	2	474.256508	946.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.896	1	26.585	26.085	27.085	-0.3114								0	0	0	0.8837	1	9603	9603		15.768	4.1279	1		+		38804	13171	24862	24987	37353	37353					0.023074363318073665
YERWARWGMWY	11	Unmodified	_YERWARWGMWY_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3;ANO3|p.I617Lfs*8|1|0.05|ENSG00000134343|chr11:26624469-26624469|A/-|frameshift_variant;ANO3|p.L701*|1|0.45|ENSG00000134343|chr11:26639198-26639198|T/-|frameshift_variant;ANO3|p.F764Lfs*11|1|0.14|ENSG00000134343|chr11:26643195-26643195|T/-|frameshift_variant	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MSMS	HCT116MG_D190212_S2	2	802.3635864257812	2	802.366795	1602.71904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.564	1	36.45	35.95	36.95	-0.11478								0	0	0	0.95581	1	13677	13677		3.2813	0.28607	1				38805	3281	24863	24988	37354	37354					-0.05821286403102022
YESLYRKGY	9	Unmodified	_YESLYRKGY_					0	0	0		nc|ENSG00000188655|P60153|RNASE9;ENSG00000188655|ENST00000404716|RNASE9	nc|ENSG00000188655|P60153|RNASE9	nc|ENSG00000188655|P60153|RNASE9	MSMS	HCT116MG_D190212_S2	2	589.793701171875	2	589.795663	1177.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.186	1	28.87	28.37	29.37	-0.31613								0	0	0	0.76669	1	10680	10680		12.532	2.4576	1				38806	5994	24864	24989	37355	37355					-0.004911758736170668
YESNRMGAQY	10	Unmodified	_YESNRMGAQY_					0	0	0			REV__TRPC7|p.N767Y|1|0.25|ENSG00000069018|chr5:136225318-136225318|T/A|missense_variant	REV__TRPC7|p.N767Y|1|0.25|ENSG00000069018|chr5:136225318-136225318|T/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	609.7642822265625	2	609.764037	1217.51352	0.59615	0.00036351	-0.1418	-8.6467E-05	0.45435	0.00027704	609.7637936166377	26.091	0.26087	25.963	25.807	26.068	-0.12795					10	4	3	0	0	0	0.57664	1	9358	9358		29.841	3.5724	1	10188000	+		38807	18019	24865	24990	37356	37356					-0.08653484653154919
YESRRKAAKQF	11	Unmodified	_YESRRKAAKQF_					0	0	0			REV__ENST00000450172.5_2_3:46722734-46730936:-|nuORF	REV__ENST00000450172.5_2_3:46722734-46730936:-|nuORF	MSMS	HCT116MG_D190212_S2	2	692.1527099609375	2	692.378217	1382.74188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.923	1	39.85	39.35	40.35	-0.072838								0	0	0	0.95196	1	15041	15041		5.2969	0	1		+		38808	13593	24866	24991	37357	37357					0.06582055986018531
YESSAAVALTP	11	Unmodified	_YESSAAVALTP_					0	0	0			REV__TTLL6|p.T708A|1|0.37|ENSG00000170703|chr17:48770016-48770016|T/C|missense_variant	REV__TTLL6|p.T708A|1|0.37|ENSG00000170703|chr17:48770016-48770016|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	554.7798461914062	2	554.779679	1107.5448	0.32612	0.00018092	0.9958	0.00055245	1.3219	0.00073337	555.2817368847518	23.621	1.0385	23.238	22.78	23.819	-0.38324					61	19	5	0	0	0	0.50491	1	8569	8569		45.7	5.7499	1	402190000	+		38809	18028	24867	24992	37358	37358					-0.004665883474444854
YESSAAVALTP	11	Unmodified	_YESSAAVALTP_					0	0	0			REV__TTLL6|p.T708A|1|0.37|ENSG00000170703|chr17:48770016-48770016|T/C|missense_variant	REV__TTLL6|p.T708A|1|0.37|ENSG00000170703|chr17:48770016-48770016|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	554.77978515625	2	554.779679	1107.5448	0.34585	0.00019187	0.80805	0.00044829	1.1539	0.00064017	555.2818175687883	23.109	0.61271	23.069	22.679	23.291	-0.03968					20	11	2	0	0	0	0.55933	1	8103	8103		39.95	3.4435	1	12365000	+		38810	18028	24867	24992	37359	37359					-0.004665883474444854
YESYVRTLFYF	11	Unmodified	_YESYVRTLFYF_					0	0	0			REV__nc|ENSG00000132635|Q9H1Q7-4|PCED1A	REV__nc|ENSG00000132635|Q9H1Q7-4|PCED1A	MSMS	HCT116MG_D190212_S2	2	744.3612670898438	2	744.36391	1486.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.694	1	18.33	17.83	18.83	-0.36325								0	0	0	0.94538	1	6440	6440		8.7454	1.6437	1		+		38811	11997	24868	24993	37360	37360					-0.010621064337783537
YESYYDYRNLS	11	Unmodified	_YESYYDYRNLS_					0	0	0		DOCK4|p.K1325Nfs*6|1|0.17|ENSG00000128512|chr7:111765136-111765136|T/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	DOCK4|p.K1325Nfs*6|1|0.17|ENSG00000128512|chr7:111765136-111765136|T/-|frameshift_variant	DOCK4|p.K1325Nfs*6|1|0.17|ENSG00000128512|chr7:111765136-111765136|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	736.823974609375	2	736.820064	1471.62557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.096	1	11.096	10.596	11.596	0								0	0	0	0.9619	1	3462	3462		0	0	1				38812	722	24869	24994	37361	37361					-0.09137352095194728
YETLEQYGKAY	11	Unmodified	_YETLEQYGKAY_					0	0	0		ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	MSMS	HCT116MG_D190212_S2	2	682.820556640625	2	682.822075	1363.6296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.947	1	27.605	27.105	28.105	-0.34201								0	0	0	0.88801	1	10174	10174		21.537	7.9221	1				38813	1935	24870	24995	37362	37362					-0.03767262601445509
YEVEIDGKTY	10	Unmodified	_YEVEIDGKTY_					0	0	0		ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-3|METAP2;METAP2|p.T365Pfs*20|1|0.23|ENSG00000111142|chr12:95512823-95512823|A/-|frameshift_variant;nc|ENSG00000111142|P50579-2|METAP2	ENSG00000111142|ENST00000323666|METAP2	ENSG00000111142|ENST00000323666|METAP2	MULTI-MSMS	HCT116MG_D190212_S1	1	608.7910766601562	2	608.790244	1215.56593	0.72631	0.00044217	0.16674	0.00010151	0.89305	0.00054368	608.7903968654015	41.38	0.36421	41.38	41.237	41.602	0					15	6	4	0	0	0	0.024602	1	15576	15576		112.04	60.626	1	58730000			38814	2273	24871	24996	37363	37363					-0.03322623038570782
YEVKVYIPP	9	Unmodified	_YEVKVYIPP_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.Y2955Ifs*3|1|0.29|ENSG00000143341|chr1:186082933-186082934|-/A|frameshift_variant;HMCN1|p.L3491Hfs*10|1|0.12|ENSG00000143341|chr1:186095419-186095420|-/ATAT|frameshift_variant;HMCN1|p.G3718Afs*6|1|0.04|ENSG00000143341|chr1:186113995-186113995|G/-|frameshift_variant;HMCN1|p.S4801Rfs*11|1|0.07|ENSG00000143341|chr1:186145536-186145537|-/AGAATAA|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MULTI-SECPEP	HCT116MG_D190212_S2	2	553.8074340820312	2	554.307875	1106.6012	0.21515	0.00011926	3.3179	0.0018391	3.533	0.0019584	554.3101328711765	40.044	0.31101	39.971	39.739	40.05	-0.072838					7	5	2	0	0	0	0.22393	1	15082	15082		25.399	8.2864	1	18164000			38815	3800	24872	24997	37364	37364					0.0521608427989122
YEVTRWFYRW	10	Unmodified	_YEVTRWFYRW_					0	0	0		ENST00000302937.8_1_19:54694186-54695312:+|nuORF	ENST00000302937.8_1_19:54694186-54695312:+|nuORF	ENST00000302937.8_1_19:54694186-54695312:+|nuORF	MSMS	HCT116MG_D190212_S2	2	753.3672485351562	2	753.369861	1504.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.857	1	46.745	46.245	47.245	-0.11121								0	0	0	0.92607	1	17859	17859		10.074	3.8681	1				38816	7013	24873	24998	37365	37365					-0.007004448999168744
YEWKETARWLK	11	Unmodified	_YEWKETARWLK_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;SLC4A7|p.S1176Kfs*13|1|0.68|ENSG00000033867|chr3:27383191-27383192|-/C|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;SLC4A7|p.L1003Wfs*11|1|0.39|ENSG00000033867|chr3:27394600-27394600|A/-|frameshift_variant;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;ENST00000428005.1_1_3:27465485-27525617:-|nuORF	ENSG00000033867|ENST00000454389|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	MSMS	HCT116MG_D190212_S2	2	755.4007568359375	2	755.396076	1508.7776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.776	1	52.588	52.088	53.088	-0.18756								0	0	0	0.95113	1	20280	20280		5.7319	0.43497	1				38817	976	24874	24999	37366	37366					0.04356093443016107
YEWVNPAAY	9	Unmodified	_YEWVNPAAY_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.F2271Lfs*13|1|0.16|ENSG00000092148|chr14:31107059-31107059|A/-|frameshift_variant;HECTD1|p.I2041Lfs*27|1|0.36|ENSG00000092148|chr14:31113133-31113133|T/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	HCT116MG_D190212_S2	2	1112.50634765625	1	1112.50474	1111.49746	0.54916	0.00061094	-0.5085	-0.00056571	0.040658	4.5233E-05	1112.5044255007592	51.222	0.30909	51.044	50.914	51.223	-0.17868					8	5	2	0	0	0	0.010834	1	19679	19679		111.29	84.403	1	15083000			38818	1575	24875	25000	37367	37367					-0.05382822827778
YEYDKNFY	8	Unmodified	_YEYDKNFY_					0	0	0		tr|U7STF4|U7STF4_FUSNUDUF1795domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01038PE=4SV=1	tr|U7STF4|U7STF4_FUSNUDUF1795domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01038PE=4SV=1	tr|U7STF4|U7STF4_FUSNUDUF1795domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01038PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	571.2452392578125	2	571.245472	1140.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.711	1	40.711	40.211	41.211	0								0	0	0	0.8837	1	15310	15310		14.582	8.2276	1				38819	18437	24876	25001	37368	37368					-0.08822832927262425
YEYKNQQKAL	10	Unmodified	_YEYKNQQKAL_					0	0	0			REV__ENST00000491285.1_1:146215077-146250826:-|nuORF	REV__ENST00000491285.1_1:146215077-146250826:-|nuORF	MSMS	HCT116MG_D190212_S2	2	429.088623046875	3	428.890944	1283.651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.222	1	9.9572	9.4572	10.457	-0.26472								0	0	0	0.97054	1	3222	3222		0.13989	0	1		+		38820	16038	24877	25002	37369	37369					0.02052167217925671
YEYSRRHT	8	Unmodified	_YEYSRRHT_					0	0	0		CON__Q3SZ57	CON__Q3SZ57	CON__Q3SZ57	MSMS	HCT116MG_D190212_S4	4	371.1809997558594	3	371.180828	1110.52066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.783	1	36.398	35.898	36.898	-0.38486								0	0	0	0.8837	1	13474	13474		0.45834	0	1			+	38821	576	24878	25003	37370	37370					-0.030183839904111665
YFAAAAGPPA	10	Unmodified	_YFAAAAGPPA_					0	0	0			REV__ENSG00000129152|ENST00000250003|MYOD1	REV__ENSG00000129152|ENST00000250003|MYOD1	MSMS	HCT116MG_D190212_S4	4	468.2328186035156	2	468.23471	934.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.571	1	20.369	19.869	20.869	-0.20133								0	0	0	0.64403	1	7050	7050		40.449	13.565	1		+		38822	11886	24879	25004	37371	37371					-0.014981731653506358
YFAKDKKTK	9	Unmodified	_YFAKDKKTK_					0	0	0			REV__PAXIP1|p.E178K|1|0.2|ENSG00000157212|chr7:154976238-154976238|C/T|missense_variant	REV__PAXIP1|p.E178K|1|0.2|ENSG00000157212|chr7:154976238-154976238|C/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	376.8852233886719	3	376.885241	1127.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.523	1	10.563	10.063	11.063	0.039975								0	0	0	0.76973	1	3190	3190		0.96228	0	1		+		38823	17385	24880	25005	37372	37372					0.07518291402743671
YFDDHAPYH	9	Unmodified	_YFDDHAPYH_					0	0	0			REV__nc|ENSG00000146776|Q9ULK2-2|ATXN7L1	REV__nc|ENSG00000146776|Q9ULK2-2|ATXN7L1	MULTI-MSMS	HCT116MG_D190212_S1	1	583.3196411132812	2	582.740888	1163.46722	0.48554	0.00028294	-4.4207	-0.0025761	-3.9352	-0.0022932	582.7387214532066	23.406	0.15668	23.406	23.314	23.471	0					4	2	2	0	0	0	0.57626	1	8344	8344		12.532	4.6214	1	3234700	+		38824	10017	24881	25006	37373	37373					-0.10797181492966956
YFDENLYF	8	Unmodified	_YFDENLYF_					0	0	0		ENST00000514799.1_1_5:59755891-59756539:-|nuORF	ENST00000514799.1_1_5:59755891-59756539:-|nuORF	ENST00000514799.1_1_5:59755891-59756539:-|nuORF	MSMS	HCT116MG_D190212_S2	2	555.7434692382812	2	555.742565	1109.47058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.522	1	34.347	33.847	34.847	-0.17512								0	0	0	0.8837	1	12847	12847		14.582	2.341	1				38825	8524	24882	25007	37374	37374					-0.07977931438972519
YFDPQLPWHA	10	Unmodified	_YFDPQLPWHA_					0	0	0			REV__ENST00000287218.8_1_6:38120953-38121079:+|nuORF	REV__ENST00000287218.8_1_6:38120953-38121079:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	637.8052368164062	2	637.303655	1272.59276	0.45711	0.00029132	2.9966	0.0019097	3.4537	0.0022011	637.3065614597997	41.159	0.60902	40.781	40.287	40.896	-0.37732					20	12	3	0	0	0	0.82332	1	15025	15025		10.074	0.6908	1	9857800	+		38826	14736	24883	25008	37375	37375					-0.03263469636726768
YFDPQLPWHA	10	Unmodified	_YFDPQLPWHA_					0	0	0			REV__ENST00000287218.8_1_6:38120953-38121079:+|nuORF	REV__ENST00000287218.8_1_6:38120953-38121079:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	637.7932739257812	2	637.303655	1272.59276	0.45711	0.00029132	2.9966	0.0019097	3.4537	0.0022011	637.3065614597997	41.159	0.60902	40.781	40.287	40.896	-0.37732					20	12	3	0	0	0	0.30526	1	14973	14973		14.838	9.5414	1	9857800	+		38827	14736	24883	25008	37376	37376					-0.03263469636726768
YFEEFFEDY	9	Unmodified	_YFEEFFEDY_					0	0	0			REV__ENST00000393668.3_1_11:71991299-71991795:+|nuORF	REV__ENST00000393668.3_1_11:71991299-71991795:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	644.75634765625	2	644.755869	1287.49719	0.60734	0.00039159	0.078266	5.0462E-05	0.68561	0.00044205	644.7559119882197	17.771	0.20896	17.414	17.336	17.545	-0.35647					7	3	3	0	0	0	0.67781	1	6097	6097		6.7232	0.51738	1	8511700	+		38828	15328	24884	25009	37377	37377					-0.13506287338259426
YFEEFFEDY	9	Unmodified	_YFEEFFEDY_					0	0	0			REV__ENST00000393668.3_1_11:71991299-71991795:+|nuORF	REV__ENST00000393668.3_1_11:71991299-71991795:+|nuORF	MULTI-MATCH	HCT116MG_D190212_S1	1		2	644.755869	1287.49719	0.88051	0.00056772	0.36216	0.00023351	1.2427	0.00080122	645.2577704073525	17.228	0.15644	17.228	17.15	17.307	0	-0.092944	0.00034943	NaN	6.7232	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	992570	+		38829	15328	24884	25009							-0.13506287338259426
YFEEFFEDY	9	Unmodified	_YFEEFFEDY_					0	0	0			REV__ENST00000393668.3_1_11:71991299-71991795:+|nuORF	REV__ENST00000393668.3_1_11:71991299-71991795:+|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	644.755869	1287.49719	0.60734	0.00039159	0.078266	5.0462E-05	0.68561	0.00044205	644.7559119882197	17.771	0.20896	17.414	17.336	17.545	-0.35647	0.092944	-1.6655E-05	NaN	6.7232	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8511700	+		38830	15328	24884	25009							-0.13506287338259426
YFERQQTWFTF	11	Unmodified	_YFERQQTWFTF_					0	0	0		SLC44A5|p.L321R|1|0.06|ENSG00000137968|chr1:75227749-75227749|A/C|missense_variant	SLC44A5|p.L321R|1|0.06|ENSG00000137968|chr1:75227749-75227749|A/C|missense_variant	SLC44A5|p.L321R|1|0.06|ENSG00000137968|chr1:75227749-75227749|A/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	777.36669921875	2	776.864608	1551.71466	0.36762	0.00028559	1.0775	0.00083704	1.4451	0.0011226	776.8655855783906	17.53	1.0924	17.611	17.117	18.21	0.081358					29	20	2	0	0	0	0.74191	1	5952	5952		1.3295	0.13619	1	3578400			38831	18165	24885	25010	37378	37378					-0.03912472345018614
YFFFYYHQYYH	11	Unmodified	_YFFFYYHQYYH_					0	0	0			REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF	REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF	MSMS	HCT116MG_D190212_S4	4	559.9103393554688	3	559.910227	1676.70885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.562	1	33.178	32.678	33.678	-0.38426								0	0	0	0.96208	1	12222	12222		0	0	1		+		38832	16175	24886	25011	37379	37379					-0.10243570856641782
YFFLEYNNIQH	11	Unmodified	_YFFLEYNNIQH_					0	0	0		TLR3|p.N494Mfs*15|2|0.32|ENSG00000164342|chr4:186083163-186083163|A/-|frameshift_variant;nc|ENSG00000164342|O15455-2|TLR3;ENSG00000164342|ENST00000296795|TLR3	TLR3|p.N494Mfs*15|2|0.32|ENSG00000164342|chr4:186083163-186083163|A/-|frameshift_variant;nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MSMS	HCT116MG_D190212_S4	4	744.3511352539062	2	744.351334	1486.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.434	1	23.187	22.687	23.687	-0.24775								0	0	0	0.95196	1	8205	8205		5.2969	1.1074	1				38833	18271;4692	24887	25012	37380	37380					-0.03576161236333064
YFFSLLYFALK	11	Unmodified	_YFFSLLYFALK_					0	0	0			REV__ENST00000528063.5_1_11:66049809-66051065:+|nuORF	REV__ENST00000528063.5_1_11:66049809-66051065:+|nuORF	MSMS	HCT116MG_D190212_S2	2	706.385498046875	2	706.386657	1410.75876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.747	1	43.669	43.169	44.169	-0.078373								0	0	0	0.95636	1	16596	16596		2.9952	0.26005	1		+		38834	12402	24888	25013	37381	37381					0.06981163819295944
YFHEDEETNPV	11	Unmodified	_YFHEDEETNPV_					0	0	0			REV__PDE6A|p.C163Y|1|0.29|ENSG00000132915|chr5:149934705-149934705|C/T|missense_variant	REV__PDE6A|p.C163Y|1|0.29|ENSG00000132915|chr5:149934705-149934705|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	690.2890625	2	690.291139	1378.56773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.237	1	28.921	28.421	29.421	-0.31613								0	0	0	0.92983	1	10701	10701		16.149	5.3496	1		+		38835	17400	24889	25014	37382	37382					-0.10641614020619272
YFILFLWLLV	10	Unmodified	_YFILFLWLLV_					0	0	0		ENSG00000165959|ENST00000298912|CLMN	ENSG00000165959|ENST00000298912|CLMN	ENSG00000165959|ENST00000298912|CLMN	MSMS	HCT116MG_D190212_S1	1	442.93292236328125	3	442.933532	1325.77877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.073	1	51.073	50.573	51.573	0								0	0	0	0.95179	1	19503	19503		2.086	0	1				38836	4813	24890	25015	37383	37383					0.12890959549872605
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.0415	1	1.777	1.277	2.277	-0.26456								0	0	0	0.77025	1	623	623		0	0	1				38837	803	24891	25016	37384	37384					0.02185846097290778
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	429.0885925292969	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.0758	1	4.8117	4.3117	5.3117	-0.26414								0	0	0	0.77025	1	1550	1550		0	0	1				38838	803	24891	25016	37385	37385					0.02185846097290778
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5787	1	5.3172	4.8172	5.8172	-0.26151								0	0	0	0.77025	1	1699	1699		0	0	1				38839	803	24891	25016	37386	37386					0.02185846097290778
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	428.89105224609375	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6574	1	5.3958	4.8958	5.8958	-0.26151								0	0	0	0.77025	1	1725	1725		0	0	1				38840	803	24891	25016	37387	37387					0.02185846097290778
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.596	1	6.3392	5.8392	6.8392	-0.25684								0	0	0	0.77025	1	2019	2019		0	0	1				38841	803	24891	25016	37388	37388					0.02185846097290778
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	429.08868408203125	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.1015	1	6.8513	6.3513	7.3513	-0.25015								0	0	0	0.77025	1	2173	2173		0	0	1				38842	803	24891	25016	37389	37389					0.02185846097290778
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	429.088623046875	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.6108	1	7.3693	6.8693	7.8693	-0.24153								0	0	0	0.77025	1	2326	2326		0	0	1				38843	803	24891	25016	37390	37390					0.02185846097290778
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.1326	1	8.9118	8.4118	9.4118	-0.22071								0	0	0	0.77025	1	2791	2791		0	0	1				38844	803	24891	25016	37391	37391					0.02185846097290778
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	428.8907470703125	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.248	1	10.048	9.5484	10.548	-0.1993								0	0	0	0.77025	1	3141	3141		0	0	1				38845	803	24891	25016	37392	37392					0.02185846097290778
YFKNYHRTR	9	Unmodified	_YFKNYHRTR_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MSMS	HCT116MG_D190212_S4	4	429.0886535644531	3	428.891389	1283.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.706	1	11.531	11.031	12.031	-0.17441								0	0	0	0.77025	1	3617	3617		0	0	1				38846	803	24891	25016	37393	37393					0.02185846097290778
YFKQGLLYRRR	11	Unmodified	_YFKQGLLYRRR_					0	0	0			REV__ENST00000258761.7_2_7:16685784-16705073:+|nuORF	REV__ENST00000258761.7_2_7:16685784-16705073:+|nuORF	MSMS	HCT116MG_D190212_S4	4	750.4330444335938	2	750.433327	1498.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.234	1	57.945	57.445	58.445	-0.28879								0	0	0	0.95636	1	21881	21881		2.9952	0	1		+		38847	14616	24892	25017	37394	37394					0.12262901045050967
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	434.8817138671875	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0549	1	8.0549	7.5549	8.5549	0								0	0	0	0.7701	1	2429	2429		0.23584	0	1		+		38848	17901	24893	25018	37395	37395					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	434.87005615234375	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.241	1	9.241	8.741	9.741	0								0	0	0	0.7701	1	2798	2798		0.23584	0	1		+		38849	17901	24893	25018	37396	37396					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	434.8817443847656	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.176	1	10.176	9.6764	10.676	0								0	0	0	0.7701	1	3110	3110		0.23584	0.095952	1		+		38850	17901	24893	25018	37397	37397					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	434.8817138671875	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.7736	1	2.7332	2.2332	3.2332	-0.040353								0	0	0	0.7701	1	890	890		0.23584	0	1		+		38851	17901	24893	25018	37398	37398					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	434.88250732421875	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.6296	1	3.5675	3.0675	4.0675	-0.062129								0	0	0	0.7701	1	1148	1148		0.23584	0	1		+		38852	17901	24893	25018	37399	37399					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	434.8819885253906	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.6252	1	5.4771	4.9771	5.9771	-0.14816								0	0	0	0.7701	1	1781	1781		0.23584	0	1		+		38853	17901	24893	25018	37400	37400					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	434.8820495605469	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.2244	1	6.0498	5.5498	6.5498	-0.17458								0	0	0	0.7701	1	1960	1960		0.23584	0	1		+		38854	17901	24893	25018	37401	37401					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	435.2352600097656	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.6055	1	6.4083	5.9083	6.9083	-0.19725								0	0	0	0.7701	1	2078	2078		0.23584	0	1		+		38855	17901	24893	25018	37402	37402					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	434.882080078125	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.2756	1	7.0598	6.5598	7.5598	-0.21581								0	0	0	0.7701	1	2279	2279		0.23584	0	1		+		38856	17901	24893	25018	37403	37403					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	434.88238525390625	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.0504	1	7.8192	7.3192	8.3192	-0.23116								0	0	0	0.7701	1	2520	2520		0.23584	0	1		+		38857	17901	24893	25018	37404	37404					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	434.8822937011719	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.5642	1	8.3202	7.8202	8.8202	-0.24401								0	0	0	0.7701	1	2679	2679		0.23584	0	1		+		38858	17901	24893	25018	37405	37405					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	434.8822937011719	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.278	1	13.966	13.466	14.466	-0.31202								0	0	0	0.7701	1	4664	4664		0.23584	0.095952	1		+		38859	17901	24893	25018	37406	37406					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	434.88214111328125	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.48	1	1.5409	1.0409	2.0409	0.060905								0	0	0	0.7701	1	458	458		0.23584	0	1		+		38860	17901	24893	25018	37407	37407					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	434.88250732421875	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.4021	1	2.4574	1.9574	2.9574	0.055284								0	0	0	0.7701	1	733	733		0.23584	0	1		+		38861	17901	24893	25018	37408	37408					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	434.8825378417969	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9856	1	5.0081	4.5081	5.5081	0.022513								0	0	0	0.7701	1	1500	1500		0.23584	0	1		+		38862	17901	24893	25018	37409	37409					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	434.8822326660156	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.1313	1	8.1478	7.6478	8.6478	0.016533								0	0	0	0.7701	1	2451	2451		0.23584	0	1		+		38863	17901	24893	25018	37410	37410					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	434.8818664550781	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.963	1	62.74	62.24	63.24	-0.22315								0	0	0	0.7701	1	24050	24050		0.23584	0	1		+		38864	17901	24893	25018	37411	37411					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	434.8819580078125	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.9878	1	0.72324	0.22324	1.2232	-0.26456								0	0	0	0.7701	1	300	300		0.23584	0	1		+		38865	17901	24893	25018	37412	37412					-0.012047644693438997
YFLFCRYYK	9	Unmodified	_YFLFCRYYK_					0	0	0			REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	REV__tr|U7T128|U7T128_FUSNUPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00781PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	435.23541259765625	3	434.882843	1301.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.8179	1	2.5533	2.0533	3.0533	-0.26456								0	0	0	0.7701	1	866	866		0.23584	0.095952	1		+		38866	17901	24893	25018	37413	37413					-0.012047644693438997
YFLLYFLE	8	Unmodified	_YFLLYFLE_					0	0	0		OR6C4|p.F101Lfs*31|1|0.49|ENSG00000179626|chr12:55551523-55551523|T/-|frameshift_variant	OR6C4|p.F101Lfs*31|1|0.49|ENSG00000179626|chr12:55551523-55551523|T/-|frameshift_variant	OR6C4|p.F101Lfs*31|1|0.49|ENSG00000179626|chr12:55551523-55551523|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	554.3057861328125	2	554.291694	1106.56883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.83	1	55.645	55.145	56.145	-0.18565								0	0	0	0.8837	1	21529	21529		11.114	4.7604	1				38867	9721	24894	25019	37414	37414					0.01981296876920169
YFLMTEPPL	9	Unmodified	_YFLMTEPPL_					0	0	0		ACTR3B-JMJD1C|1|fusion;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B	ACTR3B-JMJD1C|1|fusion	ACTR3B-JMJD1C|1|fusion	MSMS	HCT116MG_D190212_S1	1	555.7786254882812	2	555.780636	1109.54672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.091	1	30.091	29.591	30.591	0								0	0	0	0.64498	1	11023	11023		21.747	0.20967	1				38868	30	24895	25020	37415	37415					-0.003672508631780147
YFNTIKPLRCY	11	Unmodified	_YFNTIKPLRCY_					0	0	0			REV__ENST00000502391.5_1_X:108926845-108976383:-|nuORF	REV__ENST00000502391.5_1_X:108926845-108976383:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	473.2484130859375	3	473.248074	1416.72239	0.31682	0.00014993	-0.14154	-6.6985E-05	0.17527	8.2948E-05	473.2480058765348	19.706	0.2502	19.512	19.382	19.632	-0.19367					8	4	2	0	0	0	0.7259	1	6722	6722		13.519	11.266	1	2842900	+		38869	14968	24896	25021	37416	37416					0.030699636509098127
YFPYHMTY	8	Unmodified	_YFPYHMTY_					0	0	0			REV__OR2AG1|p.C169Y|1|0.22|ENSG00000279486|chr11:6785543-6785543|G/A|missense_variant	REV__OR2AG1|p.C169Y|1|0.22|ENSG00000279486|chr11:6785543-6785543|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	561.2399291992188	2	561.241678	1120.4688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.232	1	33.938	33.438	34.438	-0.29419								0	0	0	0.8837	1	12593	12593		14.582	1.5392	1		+		38870	17366	24897	25022	37417	37417					-0.08661263728549784
YFSKNYQDYEY	11	Unmodified	_YFSKNYQDYEY_					0	0	0		ENST00000480325.1_1_X:103031923-103040698:+|nuORF;ENST00000465975.1_1_X:103031923-103041682:+|nuORF;ENST00000485931.5_1_X:103031923-103041682:+|nuORF;nc|ENSG00000123560|P60201-2|PLP1;ENSG00000123560|ENST00000621218|PLP1	ENST00000480325.1_1_X:103031923-103040698:+|nuORF	ENST00000480325.1_1_X:103031923-103040698:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	760.3228759765625	2	760.322439	1518.63033	0.4426	0.00033652	-0.038689	-2.9416E-05	0.40391	0.0003071	760.824320101719	41.826	0.3662	41.523	41.415	41.781	-0.30257					10	7	2	0	0	0	0.74191	1	15563	15563		3.2813	0	1	15019000			38871	2807	24898	25023	37418	37418					-0.10824467952420491
YFSVFDAC	8	Unmodified	_YFSVFDAC_					0	0	0			REV__nc|ENSG00000103150|O95822-2|MLYCD	REV__nc|ENSG00000103150|O95822-2|MLYCD	MSMS	HCT116MG_D190212_S4	4	476.1986389160156	2	476.199479	950.384405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.253	1	8.0215	7.5215	8.5215	-0.23148								0	0	0	0.8837	1	2523	2523		0.69038	0	1		+		38872	11177	24899	25024	37419	37419					-0.09277214545318202
YFTDLFDYL	9	Unmodified	_YFTDLFDYL_					0	0	0		nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	nc|ENSG00000113575|P67775-2|PPP2CA	nc|ENSG00000113575|P67775-2|PPP2CA	MSMS	HCT116MG_D190212_S1	1	598.7813720703125	2	598.779148	1195.54374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.478	1	17.478	16.978	17.978	0								0	0	0	0.76781	1	5951	5951		8.5933	0.43775	1				38873	1944	24900	25025	37420	37420					-0.04620802716317485
YFTFKAQTA	9	Unmodified	_YFTFKAQTA_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-MSMS	HCT116MG_D190212_S1	1	538.7738647460938	2	538.7742	1075.53385	0.67219	0.00036216	-1.189	-0.00064058	-0.51678	-0.00027843	538.7737281052175	17.333	0.20877	17.333	17.255	17.463	0					5	3	2	0	0	0	0.71898	1	5929	5929		3.9444	0.3479	1	2629200	+		38874	17297	24901	25026	37421	37421					-0.0008994593106308457
YFTFKAQTA	9	Unmodified	_YFTFKAQTA_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	538.7742	1075.53385	0.67219	0.00036216	-1.189	-0.00064058	-0.51678	-0.00027843	538.7737281052175	17.333	0.20877	17.333	17.255	17.463	0	0	0	NaN	3.9444	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2629200	+		38875	17297	24901	25026							-0.0008994593106308457
YFTPHFLV	8	Unmodified	_YFTPHFLV_					0	0	0			REV__ENST00000225728.7_1_17:6547635-6547686:-|nuORF	REV__ENST00000225728.7_1_17:6547635-6547686:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	512.3500366210938	2	512.268553	1022.52255	0.35754	0.00018316	0.25344	0.00012983	0.61098	0.00031299	512.7701921819504	56.57	0.15846	56.388	56.259	56.418	-0.18261					6	2	3	0	0	0	0.31507	1	21821	21821		9.3474	2.9933	1	11647000	+		38876	14533	24902	25027	37422	37422					0.012192767654710224
YFTWAGFKDY	10	Unmodified	_YFTWAGFKDY_					0	0	0		ENST00000490939.1_1_6:25087010-25108891:-|nuORF;nc|ENSG00000168405|Q9Y471-4|CMAHP;nc|ENSG00000168405|Q9Y471|CMAHP	ENST00000490939.1_1_6:25087010-25108891:-|nuORF	ENST00000490939.1_1_6:25087010-25108891:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	649.8018188476562	2	649.298039	1296.58152	0.89754	0.00058277	0.57714	0.00037474	1.4747	0.00095751	649.8007338343854	34.583	0.20552	34.424	34.296	34.502	-0.15834					8	3	3	0	0	0	0.48137	1	12881	12881		36.506	2.1045	1	50016000			38877	8338	24903	25028	37423	37423					-0.05490291730848185
YFVALGSAYF	10	Unmodified	_YFVALGSAYF_					0	0	0		tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	tr|U7SM56|U7SM56_FUSNUCoA-substrate-specificenzymeactivaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02088PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	569.2844848632812	2	569.2844	1136.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.713	1	57.438	56.938	57.938	-0.27434								0	0	0	0.92272	1	21939	21939		10.824	1.4408	1				38878	18346	24904	25029	37424	37424					-0.008567752712451693
YFVFYMQLKRW	11	Unmodified	_YFVFYMQLKRW_					0	0	0			REV__INTS2|p.F162Sfs*33|1|0.07|ENSG00000108506|chr17:61921799-61921799|A/-|frameshift_variant	REV__INTS2|p.F162Sfs*33|1|0.07|ENSG00000108506|chr17:61921799-61921799|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	790.9061279296875	2	790.907765	1579.80098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.553	1	39.553	39.053	40.053	0								0	0	0	0.96141	1	14841	14841		0.35063	0	1		+		38879	16902	24905	25030	37425	37425					0.0342681595598151
YFWFIKKRKV	10	Unmodified	_YFWFIKKRKV_					0	0	0			REV__ENST00000504666.5_1_5:138443812-138443896:-|nuORF	REV__ENST00000504666.5_1_5:138443812-138443896:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	472.2836608886719	3	472.283447	1413.82851	0.36271	0.0001713	0.01823	8.6099E-06	0.38094	0.00017991	472.28337128321107	54.406	1.4586	54.083	53.359	54.818	-0.32348					89	27	5	0	0	0	0.89116	1	20231	20231		0.77653	0.77653	1	20754000	+		38880	16132	24906	25031	37426	37426					0.13815087278521787
YFWFIKKRKV	10	Unmodified	_YFWFIKKRKV_					0	0	0			REV__ENST00000504666.5_1_5:138443812-138443896:-|nuORF	REV__ENST00000504666.5_1_5:138443812-138443896:-|nuORF	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		3	472.283447	1413.82851	0.20221	9.5499E-05	0.10518	4.9676E-05	0.30739	0.00014517	472.2834324976394	54.275	2.1079	54.085	52.758	54.865	-0.1894	0.001216	6.1619E-05	NaN	0.77653	153	40	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162540000	+		38881	16132	24906	25031							0.13815087278521787
YGCGYGSG	8	Unmodified	_YGCGYGSG_					0	0	0		ENSG00000187005|ENST00000335093|KRTAP21-1;ENSG00000187026|ENST00000333892|KRTAP21-2;ENSG00000237378|ENST00000611641|unknown	ENSG00000187005|ENST00000335093|KRTAP21-1	ENSG00000187005|ENST00000335093|KRTAP21-1	MSMS	HCT116MG_D190212_S4	4	382.1394958496094	2	382.139421	762.26429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.273	1	38.893	38.393	39.393	-0.38055								0	0	0	0.8837	1	14424	14424		0.79363	0	1				38882	5924	24907	25032	37427	37427					-0.12635202819058122
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.14080810546875	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1434	1	1.1434	0.64338	1.6434	0								0	0	0	0.8837	1	344	344		0	0	1		+		38883	13821	24908	25033	37428	37428					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.1404724121094	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2225	1	2.2225	1.7225	2.7225	0								0	0	0	0.8837	1	670	670		0	0	1		+		38884	13821	24908	25033	37429	37429					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.1407165527344	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8384	1	4.8384	4.3384	5.3384	0								0	0	0	0.8837	1	1458	1458		0	0	1		+		38885	13821	24908	25033	37430	37430					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.140625	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.3692	1	5.3692	4.8692	5.8692	0								0	0	0	0.8837	1	1619	1619		0	0	1		+		38886	13821	24908	25033	37431	37431					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.1405029296875	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.8762	1	5.8762	5.3762	6.3762	0								0	0	0	0.8837	1	1771	1771		0	0	1		+		38887	13821	24908	25033	37432	37432					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.14056396484375	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.3826	1	6.3826	5.8826	6.8826	0								0	0	0	0.8837	1	1924	1924		0	0	1		+		38888	13821	24908	25033	37433	37433					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.1405944824219	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.9115	1	6.9115	6.4115	7.4115	0								0	0	0	0.8837	1	2087	2087		0	0	1		+		38889	13821	24908	25033	37434	37434					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.14129638671875	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.896	1	12.896	12.396	13.396	0								0	0	0	0.8837	1	4163	4163		0	0	1		+		38890	13821	24908	25033	37435	37435					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.1404724121094	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.822	1	62.822	62.322	63.322	0								0	0	0	0.8837	1	24265	24265		0	0	1		+		38891	13821	24908	25033	37436	37436					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.1406555175781	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.412	1	63.412	62.912	63.912	0								0	0	0	0.8837	1	24497	24497		0	0	1		+		38892	13821	24908	25033	37437	37437					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S1	1	443.1408996582031	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.967	1	64.967	64.467	65.467	0								0	0	0	0.8837	1	25026	25026		0	0	1		+		38893	13821	24908	25033	37438	37438					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S2	2	443.1405944824219	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7426	1	1.7294	1.2294	2.2294	-0.013221								0	0	0	0.8837	1	567	567		0	0	1		+		38894	13821	24908	25033	37439	37439					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S2	2	443.1407470703125	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.3088	1	3.2467	2.7467	3.7467	-0.062129								0	0	0	0.8837	1	1058	1058		0	0	1		+		38895	13821	24908	25033	37440	37440					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S2	2	443.14056396484375	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	3.8242	1	3.7621	3.2621	4.2621	-0.062129								0	0	0	0.8837	1	1215	1215		0.79363	0.79363	1		+		38896	13821	24908	25033	37441	37441					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S2	2	443.1405334472656	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.3265	1	4.2374	3.7374	4.7374	-0.089082								0	0	0	0.8837	1	1371	1371		0	0	1		+		38897	13821	24908	25033	37442	37442					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S2	2	443.14044189453125	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.8444	1	4.7257	4.2257	5.2257	-0.11871								0	0	0	0.8837	1	1534	1534		0	0	1		+		38898	13821	24908	25033	37443	37443					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S2	2	443.14056396484375	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.357	1	5.2089	4.7089	5.7089	-0.14816								0	0	0	0.8837	1	1695	1695		0	0	1		+		38899	13821	24908	25033	37444	37444					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S2	2	443.1404113769531	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4447	1	7.2289	6.7289	7.7289	-0.21581								0	0	0	0.8837	1	2336	2336		0	0	1		+		38900	13821	24908	25033	37445	37445					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S2	2	443.1405334472656	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.9655	1	7.7343	7.2343	8.2343	-0.23116								0	0	0	0.8837	1	2496	2496		0	0	1		+		38901	13821	24908	25033	37446	37446					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S2	2	443.1407775878906	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.409	1	12.112	11.612	12.612	-0.29721								0	0	0	0.8837	1	4055	4055		0	0	1		+		38902	13821	24908	25033	37447	37447					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S3	3	443.1406555175781	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6803	1	1.7412	1.2412	2.2412	0.060905								0	0	0	0.8837	1	522	522		0	0	1		+		38903	13821	24908	25033	37448	37448					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S3	3	443.14068603515625	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.8516	1	6.8655	6.3655	7.3655	0.013901								0	0	0	0.8837	1	2074	2074		0	0	1		+		38904	13821	24908	25033	37449	37449					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S3	3	443.1408996582031	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.3658	1	7.3797	6.8797	7.8797	0.013901								0	0	0	0.8837	1	2228	2228		0	0	1		+		38905	13821	24908	25033	37450	37450					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S3	3	443.1407470703125	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.563	1	12.625	12.125	13.125	0.06246								0	0	0	0.8837	1	3927	3927		0	0	1		+		38906	13821	24908	25033	37451	37451					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S3	3	443.14080810546875	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.723	1	62.499	61.999	62.999	-0.22315								0	0	0	0.8837	1	23961	23961		0	0	1		+		38907	13821	24908	25033	37452	37452					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S4	4	443.1407775878906	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.61404	1	0.34948	-0.15052	0.84948	-0.26456								0	0	0	0.8837	1	196	196		0	0	1		+		38908	13821	24908	25033	37453	37453					-0.17957700951228617
YGDDEDGD	8	Unmodified	_YGDDEDGD_					0	0	0			REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	REV__ENST00000547374.5_1_14:105676890-105677657:-|nuORF	MSMS	HCT116MG_D190212_S4	4	443.1406555175781	2	443.140869	884.267186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2201	1	1.9555	1.4555	2.4555	-0.26456								0	0	0	0.8837	1	682	682		0	0	1		+		38909	13821	24908	25033	37454	37454					-0.17957700951228617
YGDGGSTF	8	Unmodified	_YGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515565.1_1_5:55134963-55135053:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	HCT116MG_D190212_S2	2	803.3218994140625	1	803.320625	802.313348	0.75264	0.00060461	0.3888	0.00031233	1.1414	0.00091694	803.3209352199443	32.51	0.26069	32.28	32.15	32.411	-0.23009					6	4	2	0	0	0	0.15838	2	12042	12042;12055		81.864	57.19	1	15550000			38910	5046	24909	25034	37455;37456	37455					-0.0957159125847511
YGDGGSTF	8	Unmodified	_YGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515565.1_1_5:55134963-55135053:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	HCT116MG_D190212_S3	3	803.3212280273438	1	803.320625	802.313348	0.99838	0.00080202	-0.14455	-0.00011612	0.85384	0.0006859	803.3204720648541	32.663	0.31242	32.378	32.248	32.56	-0.28511					9	5	2	0	0	0	0.15838	1	11983	11983		81.864	57.19	1	5954500			38911	5046	24909	25034	37457	37457					-0.0957159125847511
YGDKHITLY	9	Unmodified	_YGDKHITLY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	HCT116MG_D190212_S1	1	555.2847900390625	2	555.284931	1108.55531	0.4781	0.00026548	-0.53569	-0.00029746	-0.057586	-3.1977E-05	555.2845160647026	34.102	0.46978	34.102	33.867	34.337	0					19	8	3	0	0	0	0.037825	1	12646	12646		80.676	31.122	1	30432000			38912	2195	24910	25035	37458	37458					0.0053743909768400044
YGDKHITLY	9	Unmodified	_YGDKHITLY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	HCT116MG_D190212_S1	1	370.8598937988281	3	370.525713	1108.55531	-0.090928	-3.3691E-05	-0.39067	-0.00014475	-0.4816	-0.00017845	370.5254976924942	34.134	0.26085	34.134	33.972	34.233	0					7	4	2	0	0	0	0.31596	1	12672	12672		21.59	1.0092	1	7940500			38913	2195	24910	25035	37459	37459					0.0053743909768400044
YGDKHITLY	9	Unmodified	_YGDKHITLY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	HCT116MG_D190212_S2	2	555.2853393554688	2	555.284931	1108.55531	0.43986	0.00024425	-0.46521	-0.00025832	-0.02535	-1.4076E-05	555.2844118099098	34.301	0.466	34.125	33.916	34.382	-0.17512					17	7	4	0	0	0	0.019537	1	12751	12751		96.936	53.077	1	124890000			38914	2195	24910	25035	37460	37460					0.0053743909768400044
YGDKHITLY	9	Unmodified	_YGDKHITLY_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;SUPT6H|p.N1390Kfs*15|1|0.08|ENSG00000109111|chr17:28697042-28697043|-/GCAG|frameshift_variant	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	HCT116MG_D190212_S2	2	370.5256652832031	3	370.525713	1108.55531	-0.10921	-4.0466E-05	-0.079112	-2.9313E-05	-0.18832	-6.9779E-05	370.52562475221185	34.273	0.25991	34.097	33.967	34.227	-0.17512					9	4	3	0	0	0	0.15273	1	12777	12777		37.075	10.807	1	30568000			38915	2195	24910	25035	37461	37461					0.0053743909768400044
YGEVKVKLI	9	Unmodified	_YGEVKVKLI_					0	0	0		ENSG00000158769|ENST00000368026|F11R	ENSG00000158769|ENST00000368026|F11R	ENSG00000158769|ENST00000368026|F11R	MSMS	HCT116MG_D190212_S3	3	350.2172546386719	3	350.21822	1047.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.91	1	34.613	34.113	35.113	-0.29707								0	0	0	0.76948	1	12867	12867		2.7352	0.64919	1				38916	4387	24911	25036	37462	37462					0.11092077033868009
YGFYEYEE	8	Unmodified	_YGFYEYEE_					0	0	0			REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	REV__tr|U7T0W5|U7T0W5_FUSNUDUF4132domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00703PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	550.217529296875	2	550.21638	1098.41821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.7413	1	9.7739	9.2739	10.274	0.032559								0	0	0	0.8837	1	2943	2943		0.79363	0.10326	1		+		38917	17899	24912	25037	37463	37463					-0.12706514572573724
YGGGGHNG	8	Unmodified	_YGGGGHNG_					0	0	0			REV__ENST00000444886.1_1_9:128358162-128358726:+|nuORF	REV__ENST00000444886.1_1_9:128358162-128358726:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	718.2899169921875	1	718.290328	717.283051	0.61742	0.00044348	-0.33902	-0.00024352	0.27839	0.00019997	718.289214858376	24.637	0.31237	24.553	24.393	24.705	-0.083694					7	5	2	0	0	0	0.88026	1	8806	8806		0	0	1	1433400	+		38918	15666	24913	25038	37464	37464					-0.08689905133007869
YGGGGQYF	8	Unmodified	_YGGGGQYF_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|482|460.96|0.0|25.46|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	HCT116MG_D190212_S1	1	848.3571166992188	1	848.357345	847.350068	0.58619	0.0004973	-0.46893	-0.00039782	0.11726	9.9477E-05	848.3568035629958	40.968	0.39149	40.968	40.794	41.185	0					13	7	2	0	0	0	0.2535	1	15403	15403		63.394	42.94	1	36204000			38919	441	24914	25039	37465	37465					-0.07971294641913573
YGGGNYGP	8	Unmodified	_YGGGNYGP_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	HCT116MG_D190212_S1	1	784.32666015625	1	784.326044	783.318768	0.83632	0.00065595	-0.067029	-5.2573E-05	0.76929	0.00060338	784.3259854211144	26.683	0.52079	26.683	26.397	26.918	0					14	9	2	0	0	0	0.13092	1	9639	9639		87.991	20.956	1	5900300			38920	2769	24915	25040	37466	37466					-0.08155867675998252
YGGLIFNSY	9	Unmodified	_YGGLIFNSY_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	HCT116MG_D190212_S2	2	1033.49951171875	1	1033.49892	1032.49165	0.52279	0.00054031	0.18769	0.00019398	0.71048	0.00073428	1033.4990772761914	55.482	0.30855	55.296	55.123	55.431	-0.18565					14	5	4	0	0	0	0.013464	1	21391	21391		104.8	41.236	1	336360000			38921	6255	24916	25041	37467	37467					-0.023299213394238905
YGGLIFNSY	9	Unmodified	_YGGLIFNSY_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	HCT116MG_D190212_S3	3	1033.4989013671875	1	1033.49892	1032.49165	0.59737	0.00061738	-0.0032952	-3.4056E-06	0.59407	0.00061397	1033.498407723162	55.564	0.27157	55.277	55.14	55.411	-0.28773					7	4	2	0	0	0	0.043314	1	21091	21091		77.984	38.027	1	8717500			38922	6255	24916	25041	37468	37468					-0.023299213394238905
YGGLKLLV	8	Unmodified	_YGGLKLLV_					0	0	0			REV__ENSG00000198886|ENST00000361381|MT-ND4	REV__ENSG00000198886|ENST00000361381|MT-ND4	MSMS	HCT116MG_D190212_S4	4	431.77410888671875	2	431.773471	861.53239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.974	1	46.603	46.103	47.103	-0.37038								0	0	0	0.8837	1	17360	17360		2.8892	0	1		+		38923	14159	24917	25042	37469	37469					0.09608464770860792
YGIQPNCP	8	Unmodified	_YGIQPNCP_					0	0	0		EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;EPG5|p.Y1902Ifs*26|3|0.23|ENSG00000152223|chr18:45879178-45879178|A/-|frameshift_variant;EPG5|p.C2007Yfs*2|1|0.36|ENSG00000152223|chr18:45876264-45876265|AC/-|frameshift_variant	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	EPG5|p.M2300Cfs*10|1|0.18|ENSG00000152223|chr18:45860215-45860215|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	446.2033996582031	2	446.205096	890.395638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.398	1	58.227	57.727	58.727	-0.1703								0	0	0	0.8837	1	22568	22568		2.8892	0.31174	1				38924	4139	24918	25043	37470	37470					-0.05394392451182739
YGLEECTC	8	Unmodified	_YGLEECTC_					0	0	0		ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ADAM10|p.P631Lfs*17|1|0.5|ENSG00000137845|chr15:58610430-58610430|G/-|frameshift_variant;ENST00000462061.1_1_15:58903171-58913692:-|nuORF;ENST00000470269.5_1_15:58902390-58913692:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENST00000396136.6_1_15:58889748-58968450:-|nuORF	MSMS	HCT116MG_D190212_S1	1	459.1717224121094	2	459.172604	916.330655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.257	1	64.257	63.757	64.757	0								0	0	0	0.8837	1	24794	24794		0.79363	0	1				38925	3510	24919	25044	37471	37471					-0.1308575503933298
YGLILTKPY	9	Unmodified	_YGLILTKPY_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MSMS	HCT116MG_D190212_S2	2	534.3121337890625	2	534.310418	1066.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.506	1	36.383	35.883	36.883	-0.12238								0	0	0	0.7676	1	13653	13653		9.3474	0.75416	1				38926	5364	24920	25045	37472	37472					0.07564388142509415
YGLKYTALR	9	Unmodified	_YGLKYTALR_					0	0	0		tr|U7T076|U7T076_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00758PE=3SV=1	tr|U7T076|U7T076_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00758PE=3SV=1	tr|U7T076|U7T076_FUSNUUDP-glucose4-epimeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00758PE=3SV=1	MSMS	HCT116MG_D190212_S1	1	542.8106689453125	2	542.811116	1083.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.991	1	13.991	13.491	14.491	0								0	0	0	0.77025	1	4557	4557		0	0	1				38927	18544	24921	25046	37473	37473					0.06922022231242408
YGLLQRSDKK	10	Unmodified	_YGLLQRSDKK_					0	0	0		nc|ENSG00000172766|Q6N069-4|NAA16;nc|ENSG00000172766|Q6N069-3|NAA16;nc|ENSG00000172766|Q6N069-2|NAA16;NAA16|p.R628Ifs*4|1|0.06|ENSG00000172766|chr13:41369218-41369219|-/TTCT|frameshift_variant;ENSG00000172766|ENST00000379406|NAA16;nc|ENSG00000172766|Q6N069-5|NAA16;ENST00000476980.5_1_13:41885589-41929305:+|nuORF;nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.12|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000172766|Q6N069-4|NAA16;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000172766|Q6N069-4|NAA16	MSMS	HCT116MG_D190212_S4	4	403.2325134277344	3	403.2313	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.8998	1	9.7005	9.2005	10.2	-0.1993								0	0	0	0.96804	1	3034	3034		0.69767	0	1				38928	5261;4670	24922	25047	37474	37474					0.07700177317406087
YGLLTFSP	8	Unmodified	_YGLLTFSP_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MSMS	HCT116MG_D190212_S1	1	449.2396240234375	2	449.239461	896.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.912	1	31.912	31.412	32.412	0								0	0	0	0.8837	1	11758	11758		11.114	0	1		+		38929	12674	24923	25048	37475	37475					0.011995951201811295
YGLRRITFL	9	Unmodified	_YGLRRITFL_					0	0	0		nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.T1476Hfs*7|1|0.28|ENSG00000076555|chr12:109235620-109235621|-/T|frameshift_variant	nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-3|ACACB	MSMS	HCT116MG_D190212_S4	4	380.2284240722656	3	380.229231	1137.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.096	1	58.816	58.316	59.316	-0.27988								0	0	0	0.76991	1	22230	22230		1.1933	0.12188	1				38930	1337	24924	25049	37476	37476					0.10253703876537656
YGRHYFVL	8	Unmodified	_YGRHYFVL_					0	0	0			REV__nc|ENSG00000204815|Q96NG3-2|ODAD4	REV__nc|ENSG00000204815|Q96NG3-2|ODAD4	MSMS	HCT116MG_D190212_S4	4	352.1863708496094	3	352.187143	1053.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.527	1	34.142	33.642	34.642	-0.38558								0	0	0	0.8837	1	12611	12611		4.3292	1.334	1		+		38931	14207	24925	25050	37477	37477					0.014971973712817999
YGSRLNQYDL	10	Unmodified	_YGSRLNQYDL_					0	0	0		GABRA1|p.D211Y|1|0.51|ENSG00000022355|chr5:161882629-161882629|G/T|missense_variant	GABRA1|p.D211Y|1|0.51|ENSG00000022355|chr5:161882629-161882629|G/T|missense_variant	GABRA1|p.D211Y|1|0.51|ENSG00000022355|chr5:161882629-161882629|G/T|missense_variant	MSMS	HCT116MG_D190212_S3	3	410.2026672363281	3	410.20341	1227.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.658	1	33.368	32.868	33.868	-0.29013								0	0	0	0.93337	1	12361	12361		8.4443	1.3426	1				38932	9175	24926	25051	37478	37478					-0.016289788502717784
YGWGMPAA	8	Unmodified	_YGWGMPAA_					0	0	0			REV__ENSG00000171219|ENST00000342711|CDC42BPG	REV__ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	HCT116MG_D190212_S3	3	852.371337890625	1	852.370886	851.36361	0.68615	0.00058486	-0.062366	-5.3159E-05	0.62379	0.0005317	852.3706933092793	15.762	0.62498	15.847	15.404	16.029	0.085423					16	11	2	0	0	0	0.88026	1	5058	5058		0	0	1	8598900	+		38933	13337	24927	25052	37479	37479					-0.0680176013432856
YGWGMPAA	8	Unmodified	_YGWGMPAA_					0	0	0			REV__ENSG00000171219|ENST00000342711|CDC42BPG	REV__ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MATCH	HCT116MG_D190212_S2	2		1	852.370886	851.36361	0.6509	0.00055481	-0.096082	-8.1898E-05	0.55482	0.00047291	852.3707777622919	16.068	0.47008	15.734	15.48	15.951	-0.33451	-0.056735	-2.1835E-05	NaN	0	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3310100	+		38934	13337	24927	25052							-0.0680176013432856
YGWGMPAA	8	Unmodified	_YGWGMPAA_					0	0	0			REV__ENSG00000171219|ENST00000342711|CDC42BPG	REV__ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		1	852.370886	851.36361	0.68615	0.00058486	-0.062366	-5.3159E-05	0.62379	0.0005317	852.3706933092793	15.762	0.62498	15.847	15.404	16.029	0.085423	0.056735	6.9037E-06	NaN	0	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8598900	+		38935	13337	24927	25052							-0.0680176013432856
YHEEEEEDNCY	11	Unmodified	_YHEEEEEDNCY_					0	0	0		ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	730.2510986328125	2	730.251353	1458.48815	0.47051	0.00034359	-0.42027	-0.0003069	0.050243	3.669E-05	730.2508016088651	15.609	1.0408	15.695	15.196	16.237	0.085424					66	19	5	0	0	0	0.74191	2	4993	4993;5224		0	0	1	24762000			38936	18728	24928	25053	37480;37481	37480					-0.22275048756887372
YHEEEEEDNCY	11	Unmodified	_YHEEEEEDNCY_					0	0	0		ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	730.2512817382812	2	730.251353	1458.48815	0.18347	0.00013398	0.015645	1.1425E-05	0.19911	0.0001454	730.2510562366512	15.568	1.0453	15.406	14.926	15.971	-0.16173					70	20	5	0	0	0	0.74191	2	4890	4890;5125		0	0	1	19775000			38937	18728	24928	25053	37482;37483	37482					-0.22275048756887372
YHEEEEEDNCY	11	Unmodified	_YHEEEEEDNCY_					0	0	0		ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	730.2509765625	2	730.251353	1458.48815	0.26616	0.00019436	-0.29973	-0.00021888	-0.033576	-2.4519E-05	730.2509786829357	16.694	1.5126	16.527	15.82	17.333	-0.16664					71	29	4	0	0	0	0.74191	2	5354	5354;5594		0	0	1	13351000			38938	18728	24928	25053	37484;37485	37484					-0.22275048756887372
YHEEEEEDNCY	11	Unmodified	_YHEEEEEDNCY_					0	0	0		ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	730.251353	1458.48815	0.36441	0.00026611	-0.46205	-0.00033742	-0.097642	-7.1303E-05	730.2508556216666	16.677	1.6125	16.761	16.081	17.693	0.084858	0.11711	-8.423E-05	NaN	0	70	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13345000			38939	18728	24928	25053							-0.22275048756887372
YHEEEEEDNCY	11	Unmodified	_YHEEEEEDNCY_					0	0	0		ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	ZNF366|p.C616Y|1|0.33|ENSG00000178175|chr5:72444144-72444144|C/T|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	730.251353	1458.48815	0.18347	0.00013398	0.015645	1.1425E-05	0.19911	0.0001454	730.2510562366512	15.568	1.0453	15.406	14.926	15.971	-0.16173	-0.14438	0.00032193	NaN	0	70	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19775000			38940	18728	24928	25053							-0.22275048756887372
YHFGNGYYSC	10	Unmodified	_YHFGNGYYSC_					0	0	0		ENSG00000128714|ENST00000392539|HOXD13	ENSG00000128714|ENST00000392539|HOXD13	ENSG00000128714|ENST00000392539|HOXD13	MSMS	HCT116MG_D190212_S3	3	404.1591491699219	3	404.158924	1209.45494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.4434	1	2.4987	1.9987	2.9987	0.055284								0	0	0	0.97116	1	743	743		0	0	1				38941	3010	24929	25054	37486	37486					-0.1414054122762991
YHGKTGGV	8	Unmodified	_YHGKTGGV_					0	0	0		ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	818.41552734375	1	818.415528	817.408252	0.6364	0.00052084	0.22579	0.00018479	0.86219	0.00070563	818.415639999416	18.918	0.31334	18.549	18.418	18.732	-0.3695					8	5	2	0	0	0	0.6854	1	6546	6546		24.674	0	1	23594000			38942	8362	24930	25055	37487	37487					-0.007756129966196568
YHHMPENRCV	10	Unmodified	_YHHMPENRCV_					0	0	0		ENST00000477995.1_1_6:170176000-170181606:+|nuORF;nc|ENSG00000130023|Q5T6L9-4|ERMARD;nc|ENSG00000130023|Q5T6L9-2|ERMARD;nc|ENSG00000130023|Q5T6L9-3|ERMARD;ENSG00000130023|ENST00000366773|ERMARD	ENST00000477995.1_1_6:170176000-170181606:+|nuORF	ENST00000477995.1_1_6:170176000-170181606:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	643.2816772460938	2	643.281874	1284.5492	0.85873	0.0005524	-0.61848	-0.00039785	0.24025	0.00015455	643.2814328789444	20.618	0.36458	20.618	20.383	20.748	0					10	6	2	0	0	0	0.83158	1	7231	7231		9.3831	0.63772	1	5069500			38943	3051	24931	25056	37488	37488					-0.08169725677157658
YHHPLQLHV	9	Unmodified	_YHHPLQLHV_					0	0	0		TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant	TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant	TP53|p.C229Yfs*10|1|0.59|ENSG00000141510|chr17:7674276-7674277|AC/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	381.87481689453125	3	381.873447	1142.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3565	1	2.3565	1.8565	2.8565	0								0	0	0	0.77008	1	713	713		0.26902	0	1				38944	18282	24932	25057	37489	37489					0.03291673665603412
YHIALVFV	8	Unmodified	_YHIALVFV_					0	0	0			REV__ENST00000441321.1_1_2:120750895-120751159:-|nuORF	REV__ENST00000441321.1_1_2:120750895-120751159:-|nuORF	MSMS	HCT116MG_D190212_S1	1	481.2806701660156	2	481.278921	960.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.124	1	45.124	44.624	45.624	0								0	0	0	0.8837	1	17088	17088		6.3541	1.5981	1		+		38945	15648	24933	25058	37490	37490					0.06143867145135573
YHKLALRWH	9	Unmodified	_YHKLALRWH_					0	0	0		DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant	DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant	DNAJB8|p.R24H|1|0.38|ENSG00000179407|chr3:128463175-128463175|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	613.3455810546875	2	612.343449	1222.67235	0.39209	0.00024009	-0.38566	-0.00023616	0.006428	3.9361E-06	612.3441883954486	61.802	1.7619	61.802	60.952	62.714	0					102	33	4	0	0	0	0.76814	2	23844	23844;24047		0.52476	0	1	11618000			38946	713	24934	25059	37491;37492	37491					0.0699164182790355
YHKLKEKERE	10	Unmodified	_YHKLKEKERE_					0	0	0		ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	MSMS	HCT116MG_D190212_S3	3	680.3703002929688	2	680.372601	1358.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.49	1	39.188	38.688	39.688	-0.30137								0	0	0	0.94746	1	14660	14660		5.2969	1.7004	1				38947	3341	24935	25060	37493	37493					0.06563233891870368
YHLDNMRA	8	Unmodified	_YHLDNMRA_					0	0	0			REV__KLHDC2|p.F310Rfs*26|1|0.05|ENSG00000165516|chr14:49780745-49780746|-/GAGAGTAT|frameshift_variant	REV__KLHDC2|p.F310Rfs*26|1|0.05|ENSG00000165516|chr14:49780745-49780746|-/GAGAGTAT|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	510.2400207519531	2	510.240001	1018.46545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.733	1	40.354	39.854	40.854	-0.37828								0	0	0	0.8837	1	14955	14955		9.3474	0	1		+		38948	13057	24936	25061	37494	37494					-0.043045137825629354
YHLIRHGWRQ	10	Unmodified	_YHLIRHGWRQ_					0	0	0			REV__XKR3|p.N355Mfs*2|1|0.35|ENSG00000172967|chr22:16783935-16783935|T/-|frameshift_variant	REV__XKR3|p.N355Mfs*2|1|0.35|ENSG00000172967|chr22:16783935-16783935|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	683.3692626953125	2	683.367987	1364.72142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.753	1	22.753	22.253	23.253	0								0	0	0	0.94339	1	8071	8071		6.2058	0.47393	1		+		38949	13409	24937	25062	37495	37495					0.053649301168888996
YHLNRQLMIFF	11	Unmodified	_YHLNRQLMIFF_					0	0	0			REV__nc|ENSG00000164244|Q96M27-5|PRRC1	REV__nc|ENSG00000164244|Q96M27-5|PRRC1	MSMS	HCT116MG_D190212_S2	2	741.3927001953125	2	741.389739	1480.76493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.045	1	32.834	32.334	33.334	-0.21135								0	0	0	0.95581	1	12247	12247		3.2813	0.78282	1		+		38950	17191	24938	25063	37496	37496					0.04377358779129281
YHMFRDLE	8	Unmodified	_YHMFRDLE_					0	0	0			REV__ENST00000422095.1_3_7:92000906-92025787:+|nuORF	REV__ENST00000422095.1_3_7:92000906-92025787:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	371.3153381347656	3	370.839415	1109.49641	-0.027862	-1.0332E-05	0.073167	2.7133E-05	0.045305	1.6801E-05	371.17394685216203	10.635	1.2616	10.635	10.174	11.435	0					65	44	2	0	0	0	0.33606	1	3169	3169		0.45834	0	1	1276800	+		38951	10462	24939	25064	37497	37497					-0.05395360468310173
YHRRRRRRRRR	11	Unmodified	_YHRRRRRRRRR_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MSMS	HCT116MG_D190212_S1	1	862.5258178710938	2	862.528679	1723.0428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.338	1	60.338	59.838	60.838	0								0	0	0	0.95954	1	23257	23257		1.3295	1.3295	1		+		38952	14955	24940	25065	37498	37498					0.21020464990328946
YHRRRRRRRRR	11	Unmodified	_YHRRRRRRRRR_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	574.8318481445312	3	575.354878	1723.0428	0.37335	0.00021481	-0.5546	-0.00031909	-0.18125	-0.00010428	575.3538468899178	56.946	0.25997	56.946	56.737	56.997	0					6	4	2	0	0	0	0.36631	1	21877	21877		0	0	1	4487800	+		38953	14955	24940	25065	37499	37499					0.21020464990328946
YHRRRRRRRRR	11	Unmodified	_YHRRRRRRRRR_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MSMS	HCT116MG_D190212_S4	4	862.5270385742188	2	862.528679	1723.0428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.58	1	59.303	58.803	59.803	-0.27731								0	0	0	0.96208	1	22424	22424		0	0	1		+		38954	14955	24940	25065	37500	37500					0.21020464990328946
YHRRRRRRRRR	11	Unmodified	_YHRRRRRRRRR_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MSMS	HCT116MG_D190212_S4	4	862.52734375	2	862.528679	1723.0428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.188	1	59.917	59.417	60.417	-0.27156								0	0	0	0.96208	1	22671	22671		0	0	1		+		38955	14955	24940	25065	37501	37501					0.21020464990328946
YHRRRRRRRRR	11	Unmodified	_YHRRRRRRRRR_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MSMS	HCT116MG_D190212_S4	4	862.5272216796875	2	862.528679	1723.0428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.826	1	60.56	60.06	61.06	-0.26582								0	0	0	0.96208	1	22930	22930		0	0	1		+		38956	14955	24940	25065	37502	37502					0.21020464990328946
YHWSLKLARW	10	Unmodified	_YHWSLKLARW_					0	0	0			REV__ENST00000371065.8_1_1:65886339-65891024:+|nuORF	REV__ENST00000371065.8_1_1:65886339-65891024:+|nuORF	MSMS	HCT116MG_D190212_S4	4	680.3701171875	2	680.369664	1358.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.516	1	39.135	38.635	39.635	-0.38055								0	0	0	0.96291	1	14521	14521		1.8442	0	1		+		38957	15161	24941	25066	37503	37503					0.05976180170887346
YHWWYRWWCVF	11	Unmodified	_YHWWYRWWCVF_					0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	MSMS	HCT116MG_D190212_S3	3	866.3898315429688	2	866.387531	1730.76051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.212	1	32.927	32.427	33.427	-0.28511								0	0	0	0.95925	1	12184	12184		1.4819	1.4819	1		+		38958	15443	24942	25067	37504	37504					-0.07564105643791663
YIADKKDVYE	10	Unmodified	_YIADKKDVYE_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-MSMS	HCT116MG_D190212_S1	1	622.314208984375	2	622.313886	1242.61322	0.58073	0.0003614	-0.33249	-0.00020691	0.24824	0.00015448	622.3137191744513	23.601	0.2088	23.601	23.471	23.679	0					6	3	2	0	0	0	0.14637	1	8436	8436		64.927	35.49	1	7184700			38959	804	24943	25068	37505	37505					0.00161656232421592
YIDDRGFRY	9	Unmodified	_YIDDRGFRY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	HCT116MG_D190212_S1	1	402.1963195800781	3	402.196367	1203.56727	0.046018	1.8508E-05	-0.23588	-9.4868E-05	-0.18986	-7.636E-05	402.1962386897298	35.501	0.31015	35.501	35.371	35.682	0					9	5	2	0	0	0	0.041798	1	13219	13219		63.227	43.602	1	23587000			38960	4060	24944	25069	37506	37506					-0.0263694415914415
YIDDRGFRY	9	Unmodified	_YIDDRGFRY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MSMS	HCT116MG_D190212_S1	1	602.7911987304688	2	602.790912	1203.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.526	1	35.526	35.026	36.026	0								0	0	0	0.0021192	1	13218	13218		125.04	75.105	1				38961	4060	24944	25069	37507	37507					-0.0263694415914415
YIDDRGFRY	9	Unmodified	_YIDDRGFRY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	HCT116MG_D190212_S2	2	602.7897338867188	2	602.790912	1203.56727	0.59775	0.00036032	-0.26325	-0.00015868	0.3345	0.00020164	602.7906838537666	35.478	0.29894	35.336	35.19	35.489	-0.14245					17	5	4	0	0	0	0.0051419	2	13225	13225;13260		136.39	77.713	1	245460000			38962	4060	24944	25069	37508;37509	37508					-0.0263694415914415
YIDDRGFRY	9	Unmodified	_YIDDRGFRY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	HCT116MG_D190212_S2	2	402.1962890625	3	402.196367	1203.56727	-0.17122	-6.8863E-05	-0.059147	-2.3789E-05	-0.23036	-9.2652E-05	402.1961856327429	35.503	0.35043	35.361	35.19	35.541	-0.14245					15	6	4	0	0	0	0.027442	1	13247	13247		80.676	55.794	1	157510000			38963	4060	24944	25069	37510	37510					-0.0263694415914415
YIDDRGFRY	9	Unmodified	_YIDDRGFRY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	HCT116MG_D190212_S3	3	602.791015625	2	602.790912	1203.56727	0.83154	0.00050124	-0.49195	-0.00029654	0.33959	0.0002047	603.2921940688551	35.75	0.2374	35.451	35.338	35.575	-0.29922					13	7	2	0	0	0	0.0064416	1	13175	13175		125.04	66.359	1	23471000			38964	4060	24944	25069	37511	37511					-0.0263694415914415
YIDDRGFRY	9	Unmodified	_YIDDRGFRY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MSMS	HCT116MG_D190212_S3	3	402.1963806152344	3	402.196367	1203.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.745	1	35.446	34.946	35.946	-0.29922								0	0	0	0.023131	1	13184	13184		80.676	55.794	1				38965	4060	24944	25069	37512	37512					-0.0263694415914415
YIDDRGFRY	9	Unmodified	_YIDDRGFRY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MSMS	HCT116MG_D190212_S4	4	602.7919921875	2	602.790912	1203.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.847	1	35.461	34.961	35.961	-0.38606								0	0	0	0.029033	1	13096	13096		83.429	41.589	1				38966	4060	24944	25069	37513	37513					-0.0263694415914415
YIDDRGFRY	9	Unmodified	_YIDDRGFRY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MSMS	HCT116MG_D190212_S4	4	402.19622802734375	3	402.196367	1203.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.913	1	35.527	35.027	36.027	-0.38606								0	0	0	0.76902	1	13122	13122		2.4985	0.75621	1				38967	4060	24944	25069	37514	37514					-0.0263694415914415
YIDDRGFRY	9	Unmodified	_YIDDRGFRY_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MATCH	HCT116MG_D190212_S4	4		3	402.196367	1203.56727	0.36167	0.00014546	-0.58074	-0.00023357	-0.21907	-8.8108E-05	402.19612177113765	35.836	0.11278	35.45	35.413	35.526	-0.38606	0.012676	-0.00044762	NaN	80.676	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6776300			38968	4060	24944	25069							-0.0263694415914415
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF;ENST00000467971.5_1_2:242255375-242276932:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	HCT116MG_D190212_S1	1	631.7877197265625	2	631.788035	1261.56152	0.4521	0.00028563	0.12919	8.1621E-05	0.58129	0.00036725	631.7880323536011	39.084	0.31165	39.084	38.851	39.163	0					16	5	4	0	0	0	0.0034297	2	14634	14622;14634		159.1	120.93	1	113780000			38969	5004	24945	25070	37515;37516	37516					-0.058800874614689747
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF;ENST00000467971.5_1_2:242255375-242276932:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	HCT116MG_D190212_S2	2	631.78857421875	2	631.788035	1261.56152	0.63638	0.00040206	0.094239	5.9539E-05	0.73062	0.0004616	631.7880490366316	39.071	0.46469	38.986	38.806	39.27	-0.084621					27	8	5	0	0	0	0.0035417	2	14677	14677;14694		171.46	125.44	1	514470000			38970	5004	24945	25070	37517;37518	37517					-0.058800874614689747
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF;ENST00000467971.5_1_2:242255375-242276932:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	HCT116MG_D190212_S2	2	1262.5714111328125	1	1262.56879	1261.56152	0.70793	0.00089381	0.89049	0.0011243	1.5984	0.0020181	1262.5701148232145	39.071	0.2062	38.987	38.857	39.063	-0.084618					6	3	2	0	0	0	0.0024989	1	14724	14724		184.36	62.176	1	23078000			38971	5004	24945	25070	37519	37519					-0.058800874614689747
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF;ENST00000467971.5_1_2:242255375-242276932:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	HCT116MG_D190212_S3	3	631.7880249023438	2	631.788035	1261.56152	0.48106	0.00030393	-0.15808	-9.9871E-05	0.32299	0.00020406	631.7879534203099	39.309	0.37236	39.008	38.82	39.192	-0.30137					18	6	4	0	0	0	0.0056012	2	14579	14579;14624		132.38	94.204	1	63470000			38972	5004	24945	25070	37520;37521	37520					-0.058800874614689747
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000484167.5_1_2:242276764-242276932:+|nuORF;ENST00000467971.5_1_2:242255375-242276932:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	HCT116MG_D190212_S4	4	632.1032104492188	2	631.788035	1261.56152	0.42949	0.00027134	0.25781	0.00016288	0.6873	0.00043423	631.788155933956	39.442	0.21522	39.062	38.884	39.1	-0.38055					8	4	3	0	0	0	0.0082095	2	14490	14490;14499		117.76	71.74	1	7240500			38973	5004	24945	25070	37522;37523	37522					-0.058800874614689747
YIDIDPLLY	9	Unmodified	_YIDIDPLLY_					0	0	0		C2CD5|p.F331Lfs*5|1|0.32|ENSG00000111731|chr12:22513345-22513345|C/-|frameshift_variant;ENST00000541310.5_1_12:22631189-22697084:-|nuORF;C2CD5|p.D676Mfs*40|1|0.33|ENSG00000111731|chr12:22474769-22474769|T/-|frameshift_variant;nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5	C2CD5|p.F331Lfs*5|1|0.32|ENSG00000111731|chr12:22513345-22513345|C/-|frameshift_variant	C2CD5|p.F331Lfs*5|1|0.32|ENSG00000111731|chr12:22513345-22513345|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	562.795654296875	2	562.79734	1123.58013	0.367	0.00020655	-2.8019	-0.0015769	-2.4349	-0.0013704	562.7950627190515	54.617	0.20914	54.321	54.19	54.4	-0.29587					7	3	3	0	0	0	0.20553	1	20715	20715		30.225	1.738	1	3831600			38974	293	24946	25071	37524	37524					0.02328074180400108
YIDQGRNPQLY	11	Unmodified	_YIDQGRNPQLY_					0	0	0		ENST00000503112.1_1_5:6372618-6374583:-|nuORF;MED10|p.N92Mfs*11|1|0.23|ENSG00000133398|chr5:6374358-6374358|T/-|frameshift_variant;ENSG00000133398|ENST00000255764|MED10	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S1	1	683.783203125	2	683.841133	1365.66771	0.78332	0.00053566	-0.79962	-0.00054681	-0.016306	-1.1151E-05	683.8407523832856	34.394	0.26047	34.394	34.233	34.493	0					7	4	2	0	0	0	0.28368	1	12757	12757		53.317	22.68	1	3649200			38975	3239	24947	25072	37525	37525					-0.0004933189613893774
YIDQGRNPQLY	11	Unmodified	_YIDQGRNPQLY_					0	0	0		ENST00000503112.1_1_5:6372618-6374583:-|nuORF;MED10|p.N92Mfs*11|1|0.23|ENSG00000133398|chr5:6374358-6374358|T/-|frameshift_variant;ENSG00000133398|ENST00000255764|MED10	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	683.84130859375	2	683.841133	1365.66771	0.66168	0.00045248	0.154	0.00010531	0.81568	0.0005578	683.8410219886762	34.476	0.30968	34.3	34.124	34.433	-0.17512					13	5	3	0	0	0	0.14382	1	12858	12858		81.915	45.409	1	31354000			38976	3239	24947	25072	37526	37526					-0.0004933189613893774
YIDQGRNPQLY	11	Unmodified	_YIDQGRNPQLY_					0	0	0		ENST00000503112.1_1_5:6372618-6374583:-|nuORF;MED10|p.N92Mfs*11|1|0.23|ENSG00000133398|chr5:6374358-6374358|T/-|frameshift_variant;ENSG00000133398|ENST00000255764|MED10	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	ENST00000503112.1_1_5:6372618-6374583:-|nuORF	MULTI-SECPEP	HCT116MG_D190212_S3	3	683.7831420898438	2	683.841133	1365.66771	0.73553	0.00050299	-0.22945	-0.00015691	0.50608	0.00034608	683.8410495410335	34.711	0.25946	34.414	34.233	34.492	-0.29707					7	4	2	0	0	0	0.34351	1	12788	12788		28.234	5.4973	1	5192000			38977	3239	24947	25072	37527	37527					-0.0004933189613893774
YIDSKFEDY	9	Unmodified	_YIDSKFEDY_					0	0	0		ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000428867.1_1_7:45797631-45798728:-|nuORF	ENST00000428867.1_1_7:45797631-45798728:-|nuORF	MSMS	HCT116MG_D190212_S1	1	590.2628173828125	2	590.263862	1178.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.545	1	38.545	38.045	39.045	0								0	0	0	0.021869	1	14434	14434		90.135	33.958	1				38978	2767	24948	25073	37528	37528					-0.06894581101369113
YIEFICRGDTY	11	Unmodified	_YIEFICRGDTY_					0	0	0		ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	MULTI-MSMS	HCT116MG_D190212_S2	2	690.3197631835938	2	690.318645	1378.62274	0.62568	0.00043192	0.75335	0.00052005	1.379	0.00095198	690.3191693989517	27.092	0.26431	26.739	26.554	26.818	-0.35254					7	4	2	0	0	0	0.69464	1	9837	9837		23.79	5.6434	1	18322000			38979	3794	24949	25074	37529	37529					-0.05142898753661029
YIEFICRGDTY	11	Unmodified	_YIEFICRGDTY_					0	0	0		ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	690.318645	1378.62274	0.62568	0.00043192	0.75335	0.00052005	1.379	0.00095198	690.3191693989517	27.092	0.26431	26.739	26.554	26.818	-0.35254	0.053016	-4.6581E-05	NaN	23.79	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18322000			38980	3794	24949	25074							-0.05142898753661029
YIFFRFHRYI	10	Unmodified	_YIFFRFHRYI_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MSMS	HCT116MG_D190212_S1	1	487.93133544921875	3	487.931185	1460.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.391	1	11.391	10.891	11.891	0								0	0	0	0.96911	1	3581	3581		0.15932	0.064481	1				38981	2557	24950	25075	37530	37530					0.05977039722029076
YIFNSSVQERV	11	Unmodified	_YIFNSSVQERV_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	HCT116MG_D190212_S1	1	448.2322998046875	3	447.898098	1340.67246	0.51545	0.00023087	-0.4277	-0.00019157	0.087752	3.9304E-05	448.2320555693908	37.473	0.30724	37.473	37.348	37.655	0					10	5	3	0	0	0	0.72218	1	14024	14024		7.846	0	1	24312000			38982	2804	24951	25076	37531	37531					0.0157555224659518
YIFYRRLQSLR	11	Unmodified	_YIFYRRLQSLR_					0	0	0		nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	MSMS	HCT116MG_D190212_S1	1	505.6247863769531	3	505.624532	1513.85177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.716	1	49.716	49.216	50.216	0								0	0	0	0.96111	1	18951	18951		0.50596	0	1				38983	3349	24952	25077	37532	37532					0.11539481325235101
YIGFDYRYYNW	11	Unmodified	_YIGFDYRYYNW_					0	0	0			REV__nc|ENSG00000077232|Q8IXB1-3|DNAJC10	REV__nc|ENSG00000077232|Q8IXB1-3|DNAJC10	MSMS	HCT116MG_D190212_S4	4	780.3527221679688	2	780.351334	1558.68811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.575	1	34.189	33.689	34.689	-0.38558								0	0	0	0.95954	1	12630	12630		1.3295	0	1		+		38984	10391	24953	25078	37533	37533					-0.06888161236338419
YIHNILYEV	9	Unmodified	_YIHNILYEV_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	HCT116MG_D190212_S2	2	582.3088989257812	2	582.308406	1162.60226	0.47154	0.00027458	0.61108	0.00035584	1.0826	0.00063042	582.3088590774126	51.428	0.30889	51.249	51.069	51.378	-0.17868					8	4	2	0	0	0	0.043314	1	19718	19718		77.984	41.94	1	27450000			38985	5132	24954	25079	37534	37534					0.027462986487989838
YIHNILYEV	9	Unmodified	_YIHNILYEV_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MATCH	HCT116MG_D190212_S1	1		2	582.308406	1162.60226	0.39767	0.00023157	0.054476	3.1722E-05	0.45215	0.00026329	582.3085297644825	51.22	0.1547	51.22	51.091	51.246	0	-0.014237	-0.00025047	NaN	77.984	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21635000			38986	5132	24954	25079							0.027462986487989838
YIKGIKECL	9	Unmodified	_YIKGIKECL_					0	0	0			REV__A1CF|p.V393Ffs*3|1|0.04|ENSG00000148584|chr10:50814028-50814029|-/TAAAA|frameshift_variant	REV__A1CF|p.V393Ffs*3|1|0.04|ENSG00000148584|chr10:50814028-50814029|-/TAAAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	533.8015747070312	2	533.801903	1065.58925	0.22517	0.0001202	-0.59836	-0.0003194	-0.37318	-0.00019921	533.8013775813947	51.272	0.30884	51.272	51.091	51.4	0					8	5	2	0	0	0	0.53593	1	19601	19601		14.838	0.93222	1	17084000	+		38987	9811	24955	25080	37535	37535					0.05908144265072224
YIKITLGKKVI	11	Unmodified	_YIKITLGKKVI_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;MYOF|p.S1621Lfs*14|1|0.18|ENSG00000138119|chr10:93329785-93329785|A/-|frameshift_variant	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MSMS	HCT116MG_D190212_S1	1	638.2503662109375	2	638.423574	1274.83259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.157	1	48.157	47.657	48.657	0								0	0	0	0.95731	1	18316	18316		2.4985	1.0166	1				38988	3534	24956	25081	37536	37536					0.2061713198158941
YIKLYVRC	8	Unmodified	_YIKLYVRC_					0	0	0		nc|ENSG00000259706|Q58FF3|HSP90B2P	nc|ENSG00000259706|Q58FF3|HSP90B2P	nc|ENSG00000259706|Q58FF3|HSP90B2P	MSMS	HCT116MG_D190212_S4	4	353.19891357421875	3	353.200284	1056.57902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.563	1	41.187	40.687	41.687	-0.37637								0	0	0	0.8837	1	15257	15257		1.6526	0	1				38989	9656	24957	25082	37537	37537					0.05299581330473302
YIKQFGAT	8	Unmodified	_YIKQFGAT_					0	0	0			REV__NCS1|p.A45T|1|0.08|ENSG00000107130|chr9:130217875-130217875|G/A|missense_variant	REV__NCS1|p.A45T|1|0.08|ENSG00000107130|chr9:130217875-130217875|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	463.74139404296875	2	464.25036	926.486168	-0.041484	-1.9259E-05	0.27024	0.00012546	0.22876	0.0001062	464.2503493103527	37.975	0.20648	37.882	37.753	37.96	-0.09301					5	3	2	0	0	0	0.24939	1	14240	14240		23.148	0	1	10409000	+		38990	17343	24958	25083	37538	37538					0.01998399868762135
YIKQFGAT	8	Unmodified	_YIKQFGAT_					0	0	0			REV__NCS1|p.A45T|1|0.08|ENSG00000107130|chr9:130217875-130217875|G/A|missense_variant	REV__NCS1|p.A45T|1|0.08|ENSG00000107130|chr9:130217875-130217875|G/A|missense_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	464.25036	926.486168	-0.026785	-1.2435E-05	-0.24404	-0.00011329	-0.27082	-0.00012573	464.2502675588526	37.885	0.5727	37.885	37.55	38.123	0	0.001654	-0.00048092	NaN	16.942	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17495000	+		38991	17343	24958	25083							0.01998399868762135
YIKQFGAT	8	Unmodified	_YIKQFGAT_					0	0	0			REV__NCS1|p.A45T|1|0.08|ENSG00000107130|chr9:130217875-130217875|G/A|missense_variant	REV__NCS1|p.A45T|1|0.08|ENSG00000107130|chr9:130217875-130217875|G/A|missense_variant	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	464.25036	926.486168	-0.22864	-0.00010615	0.56979	0.00026453	0.34115	0.00015838	464.25044483713964	38.266	0.64936	37.883	37.633	38.283	-0.38282	-0.00046809	0.00027472	NaN	16.942	21	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13016000	+		38992	17343	24958	25083							0.01998399868762135
YILITIIIM	9	Unmodified	_YILITIIIM_					0	0	0		nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-3|LMBRD1	nc|ENSG00000168216|Q9NUN5-3|LMBRD1	MULTI-MSMS	HCT116MG_D190212_S1	1	1092.52587890625	1	1092.67372	1091.66644	0.69763	0.00076229	-0.21098	-0.00023053	0.48665	0.00053175	1092.6733892440109	53.276	0.30889	53.276	53.102	53.411	0					12	5	3	0	0	0	0.7005	2	20394	20394;20412		5.2307	2.9279	1	44212000			38993	4990	24959	25084	37539;37540	37539					0.12427362481412274
YILLILFILI	10	Unmodified	_YILLILFILI_					0	0	0		tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	411.9455261230469	3	411.945549	1232.81482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.381	1	63.381	62.881	63.881	0								0	0	0	0.97116	1	24485	24485		0	0	1				38994	18375	24960	25085	37541	37541					0.20772416726754273
YILLILFILI	10	Unmodified	_YILLILFILI_					0	0	0		tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	411.9453430175781	3	411.945549	1232.81482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.318	1	63.195	62.695	63.695	-0.12264								0	0	0	0.97116	1	24546	24546		0	0	1				38995	18375	24960	25085	37542	37542					0.20772416726754273
YILLILFILI	10	Unmodified	_YILLILFILI_					0	0	0		tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	tr|U7SP39|U7SP39_FUSNUPhosphatidatecytidylyltransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01717PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	411.94525146484375	3	411.945549	1232.81482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.331	1	63.087	62.587	63.587	-0.24392								0	0	0	0.97116	1	23885	23885		0	0	1				38996	18375	24960	25085	37543	37543					0.20772416726754273
YILTMVQNMM	10	Unmodified	_YILTMVQNMM_					0	0	0			REV__ENST00000298556.7_1_X:133607395-133607485:+|nuORF	REV__ENST00000298556.7_1_X:133607395-133607485:+|nuORF	MSMS	HCT116MG_D190212_S1	1	622.298583984375	2	622.297813	1242.58107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.881	1	57.881	57.381	58.381	0								0	0	0	0.92272	1	22282	22282		10.824	1.4408	1		+		38997	14770	24961	25086	37544	37544					-0.030514940382317945
YIMCMANLEE	10	Unmodified	_YIMCMANLEE_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14;ENST00000564306.5_1_15:65892084-65903486:-|nuORF	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	HCT116MG_D190212_S2	2	608.7554321289062	2	608.755978	1215.4974	0.49186	0.00029942	-0.95715	-0.00058267	-0.46529	-0.00028325	608.7552909907753	29.909	0.4649	29.608	29.34	29.805	-0.30096					13	8	3	0	0	0	0.73913	1	10992	10992		17.113	0.96379	1	26595000			38998	3570	24962	25087	37545	37545					-0.10172650205936407
YINFNQPNA	9	Unmodified	_YINFNQPNA_					0	0	0			REV__nc|ENSG00000138002|Q9UG01-2|IFT172	REV__nc|ENSG00000138002|Q9UG01-2|IFT172	MULTI-SECPEP	HCT116MG_D190212_S2	2	541.249267578125	2	540.759081	1079.50361	0.50276	0.00027187	-0.91381	-0.00049415	-0.41105	-0.00022228	540.7585355274747	17.144	0.41751	16.795	16.665	17.082	-0.34933					9	7	2	0	0	0	0.21838	1	5792	5792		26.884	5.3467	1	16092000	+		38999	12204	24963	25088	37546	37546					-0.032963045962333126
YINFNQPNA	9	Unmodified	_YINFNQPNA_					0	0	0			REV__nc|ENSG00000138002|Q9UG01-2|IFT172	REV__nc|ENSG00000138002|Q9UG01-2|IFT172	MULTI-MATCH	HCT116MG_D190212_S1	1		2	540.759081	1079.50361	0.51891	0.0002806	-0.68955	-0.00037288	-0.17064	-9.2273E-05	540.7588066658774	16.655	0.20818	16.655	16.525	16.733	0	-0.069735	0.00010837	NaN	26.884	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1491700	+		39000	12204	24963	25088							-0.032963045962333126
YINFTQQP	8	Unmodified	_YINFTQQP_					0	0	0			REV__STAB1|p.L1057Sfs*33|1|0.28|ENSG00000010327|chr3:52513135-52513136|-/T|frameshift_variant	REV__STAB1|p.L1057Sfs*33|1|0.28|ENSG00000010327|chr3:52513135-52513136|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	505.74871826171875	2	505.750724	1009.4869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.919	1	19.919	19.419	20.419	0								0	0	0	0.74658	1	6934	6934		26.884	4.1474	1		+		39001	10517	24964	25089	37547	37547					-0.017468054821961232
YINSKNEIYY	10	Unmodified	_YINSKNEIYY_					0	0	0		tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	tr|U7SLS6|U7SLS6_FUSNUIroncomplexoutermembranerecepterproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02155PE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S2	2	653.8192749023438	2	653.819335	1305.62412	0.029524	1.9303E-05	0.84085	0.00054977	0.87038	0.00056907	653.8195061539892	43.248	0.25776	43.174	43.045	43.303	-0.073376					8	4	3	0	0	0	0.84626	1	16422	16422		8.1555	0.54658	1	16870000			39002	18341	24965	25090	37548	37548					-0.016469413932554744
YINWKYFLQNF	11	Unmodified	_YINWKYFLQNF_					0	0	0		nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-3|EFCAB6;nc|ENSG00000186976|Q5THR3-5|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	MSMS	HCT116MG_D190212_S1	1	768.0015869140625	2	768.387719	1534.76089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.158	1	37.158	36.658	37.658	0								0	0	0	0.95581	1	13874	13874		3.2813	0.28607	1				39003	5921	24966	25091	37549	37549					0.014895925570954205
YIRFKHLFWWW	11	Unmodified	_YIRFKHLFWWW_					0	0	0			REV__nc|ENSG00000166262|Q96M60-2|FAM227B	REV__nc|ENSG00000166262|Q96M60-2|FAM227B	MSMS	HCT116MG_D190212_S1	1	841.440185546875	2	841.443163	1680.87177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.474	1	22.474	21.974	22.974	0								0	0	0	0.96208	1	7958	7958		0	0	1		+		39004	17196	24967	25092	37550	37550					0.05857277055815757
YIRKYNRFEKR	11	Unmodified	_YIRKYNRFEKR_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MSMS	HCT116MG_D190212_S3	3	786.9412231445312	2	786.941516	1571.86848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.093	1	61.862	61.362	62.362	-0.23129								0	0	0	0.96208	1	23713	23713		0	0	1				39005	3761	24968	25093	37551	37551					0.10541982211134382
YIRLYVLIMIL	11	Unmodified	_YIRLYVLIMIL_					0	0	0			REV__ENSG00000274286|ENST00000620793|ADRA2B	REV__ENSG00000274286|ENST00000620793|ADRA2B	MSMS	HCT116MG_D190212_S2	2	705.43359375	2	705.433084	1408.85162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.327	1	46.216	45.716	46.716	-0.11121								0	0	0	0.95521	1	17643	17643		3.5965	0	1		+		39006	14453	24969	25094	37552	37552					0.1635434528100177
YIRRKRRLIH	10	Unmodified	_YIRRKRRLIH_					0	0	0			REV__NUGGC|p.D646N|1|0.47|ENSG00000189233|chr8:28030391-28030391|C/T|missense_variant	REV__NUGGC|p.D646N|1|0.47|ENSG00000189233|chr8:28030391-28030391|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	705.9474487304688	2	705.949479	1409.8844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.166	1	47.799	47.299	48.299	-0.36751								0	0	0	0.96911	1	17830	17830		0.45834	0.10771	1		+		39007	13994	24970	25095	37553	37553					0.19585733238727698
YIRRRKQWPLR	11	Unmodified	_YIRRRKQWPLR_					0	0	0			REV__ENST00000431691.1_1_1:224918256-224918361:-|nuORF	REV__ENST00000431691.1_1_1:224918256-224918361:-|nuORF	MSMS	HCT116MG_D190212_S3	3	786.9564819335938	2	786.473318	1570.93208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.487	1	55.195	54.695	55.695	-0.2918								0	0	0	0.96141	1	21049	21049		0.35063	0.35063	1		+		39008	15584	24971	25096	37554	37554					0.16945387438931903
YITLKSIQK	9	Unmodified	_YITLKSIQK_					0	0	0			REV__MTM1|p.V324*|1|0.24|ENSG00000171100|chrX:150649811-150649811|A/-|frameshift_variant	REV__MTM1|p.V324*|1|0.24|ENSG00000171100|chrX:150649811-150649811|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	547.3329467773438	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.468	1	42.468	41.968	42.968	0								0	0	0	0.76818	1	16018	16018		7.2892	0	1		+		39009	13330	24972	25097	37555	37555					0.11167462062553568
YITLKSIQK	9	Unmodified	_YITLKSIQK_					0	0	0			REV__MTM1|p.V324*|1|0.24|ENSG00000171100|chrX:150649811-150649811|A/-|frameshift_variant	REV__MTM1|p.V324*|1|0.24|ENSG00000171100|chrX:150649811-150649811|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	547.3330688476562	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.935	1	54.617	54.117	55.117	-0.31774								0	0	0	0.67173	1	20555	20555		20.454	6.5476	1		+		39010	13330	24972	25097	37556	37556					0.11167462062553568
YITWTYFFR	9	Unmodified	_YITWTYFFR_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MSMS	HCT116MG_D190212_S1	1	432.88531494140625	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.4562	1	7.4562	6.9562	7.9562	0								0	0	0	0.77025	1	2253	2253		0	0	1				39011	2335	24973	25098	37557	37557					-0.0020970859727640345
YITWTYFFR	9	Unmodified	_YITWTYFFR_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MSMS	HCT116MG_D190212_S1	1	432.8852844238281	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.5461	1	7.5461	7.0461	8.0461	0								0	0	0	0.77025	1	2282	2282		0	0	1				39012	2335	24973	25098	37558	37558					-0.0020970859727640345
YITWTYFFR	9	Unmodified	_YITWTYFFR_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MSMS	HCT116MG_D190212_S1	1	432.8851013183594	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.068	1	8.068	7.568	8.568	0								0	0	0	0.77025	1	2433	2433		0	0	1				39013	2335	24973	25098	37559	37559					-0.0020970859727640345
YITWTYFFR	9	Unmodified	_YITWTYFFR_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MSMS	HCT116MG_D190212_S1	1	432.88543701171875	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.363	1	10.363	9.8631	10.863	0								0	0	0	0.77025	1	3175	3175		0	0	1				39014	2335	24973	25098	37560	37560					-0.0020970859727640345
YITWTYFFR	9	Unmodified	_YITWTYFFR_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MSMS	HCT116MG_D190212_S2	2	432.8853759765625	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.435	1	7.2192	6.7192	7.7192	-0.21581								0	0	0	0.77025	1	2332	2332		0	0	1				39015	2335	24973	25098	37561	37561					-0.0020970859727640345
YIVGWRTGLCE	11	Unmodified	_YIVGWRTGLCE_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	HCT116MG_D190212_S3	3	432.8851013183594	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.679	1	64.478	63.978	64.978	-0.2009								0	0	0	0.96208	1	24583	24583		0	0	1				39016	6386	24974	25099	37562	37562					-0.002748713085793497
YIVKMLIK	8	Unmodified	_YIVKMLIK_					0	0	0			REV__ENST00000483337.1_1_X:6104927-6104972:-|nuORF	REV__ENST00000483337.1_1_X:6104927-6104972:-|nuORF	MSMS	HCT116MG_D190212_S1	1	504.32000732421875	2	504.319731	1006.62491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.361	1	56.361	55.861	56.861	0								0	0	0	0.8837	1	21665	21665		2.5775	1.7838	1		+		39017	15972	24975	25100	37563	37563					0.12186226512733356
YIWSGRDGYR	10	Unmodified	_YIWSGRDGYR_					0	0	0		HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant;HCFC1|p.P1894Lfs*22|1|0.06|ENSG00000172534|chrX:153950835-153950835|G/-|frameshift_variant;nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.P367Qfs*16|1|0.4|ENSG00000172534|chrX:153960146-153960146|G/-|frameshift_variant;nc|ENSG00000172534|P51610-3|HCFC1;HCFC1|p.P456Rfs*34|1|0.39|ENSG00000172534|chrX:153959879-153959879|G/-|frameshift_variant	HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	HCFC1|p.L913Wfs*11|1|0.39|ENSG00000172534|chrX:153956309-153956309|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	424.8750305175781	3	424.875516	1271.60472	0.050917	2.1633E-05	-0.51482	-0.00021874	-0.46391	-0.0001971	424.8753185005363	30.425	0.25961	30.425	30.296	30.555	0					6	4	2	0	0	0	0.81464	1	11183	11183		6.6235	0.84002	1	3767400			39018	5251	24976	25101	37564	37564					-0.02021852893540199
YIYDKDMEII	10	Unmodified	_YIYDKDMEII_					0	0	0		ENSG00000124422|ENST00000261497|USP22;nc|ENSG00000124422|Q9UPT9-2|USP22	ENSG00000124422|ENST00000261497|USP22	ENSG00000124422|ENST00000261497|USP22	MSMS	HCT116MG_D190212_S2	2	651.81787109375	2	651.817947	1301.62134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.521	1	50.349	49.849	50.849	-0.1719								0	0	0	0.88806	1	19363	19363		17.443	5.202	1				39019	2844	24977	25102	37565	37565					-0.01740532842450193
YIYVLLIV	8	Unmodified	_YIYVLLIV_					0	0	0		nc|ENSG00000292357|P15509-8|CSF2RA;ENSG00000198223|ENST00000381529|CSF2RA;nc|ENSG00000292357|P15509-2|CSF2RA;nc|ENSG00000292357|P15509-7|CSF2RA	nc|ENSG00000292357|P15509-8|CSF2RA	nc|ENSG00000292357|P15509-8|CSF2RA	MSMS	HCT116MG_D190212_S2	2	498.31329345703125	2	498.312429	994.610306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.828	1	60.679	60.179	61.179	-0.14852								0	0	0	0.8837	1	23550	23550		0.79363	0	1				39020	6216	24978	25103	37566	37566					0.11278477636244588
YIYWFITTFQW	11	Unmodified	_YIYWFITTFQW_					0	0	0		tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	tr|U7T6I0|U7T6I0_FUSNUMultidrug-effluxtransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00244PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	784.3839111328125	2	784.384645	1566.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.296	1	34.91	34.41	35.41	-0.38606								0	0	0	0.95925	1	12922	12922		1.4819	0	1				39021	18646	24979	25104	37567	37567					-0.005969256744492668
YKARLLRLP	9	Unmodified	_YKARLLRLP_					0	0	0			REV__ENSG00000169660|ENST00000327949|HEXD	REV__ENSG00000169660|ENST00000327949|HEXD	MSMS	HCT116MG_D190212_S3	3	377.24456787109375	3	377.244992	1128.71315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.494	1	15.58	15.08	16.08	0.085423								0	0	0	0.76967	1	5074	5074		1.0715	0	1		+		39022	13255	24980	25105	37568	37568					0.15393983147532708
YKDEYDQSF	9	Unmodified	_YKDEYDQSF_					0	0	0			REV__ENSG00000106809|ENST00000375561|OGN	REV__ENSG00000106809|ENST00000375561|OGN	MSMS	HCT116MG_D190212_S1	1	398.8363037109375	3	398.836504	1193.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.907	1	11.907	11.407	12.407	0								0	0	0	0.77025	1	3788	3788		0	0	1		+		39023	11311	24981	25106	37569	37569					-0.10132055623830638
YKELIEKEHCL	11	Unmodified	_YKELIEKEHCL_					0	0	0			REV__AFP|p.V141Nfs*24|1|0.11|ENSG00000081051|chr4:73440751-73440752|-/AATTTCTTTCTCAT|frameshift_variant	REV__AFP|p.V141Nfs*24|1|0.11|ENSG00000081051|chr4:73440751-73440752|-/AATTTCTTTCTCAT|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	702.8641967773438	2	702.86322	1403.71189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.051	1	11.051	10.551	11.551	0								0	0	0	0.96208	1	3444	3444		0	0	1		+		39024	9881	24982	25107	37570	37570					0.026179362058655897
YKFVHVLK	8	Unmodified	_YKFVHVLK_					0	0	0		SYT4|p.I370Mfs*3|1|0.37|ENSG00000132872|chr18:43270508-43270509|TT/-|frameshift_variant;nc|ENSG00000132872|Q9H2B2-2|SYT4;ENSG00000132872|ENST00000255224|SYT4	SYT4|p.I370Mfs*3|1|0.37|ENSG00000132872|chr18:43270508-43270509|TT/-|frameshift_variant	SYT4|p.I370Mfs*3|1|0.37|ENSG00000132872|chr18:43270508-43270509|TT/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	517.3140258789062	2	517.313295	1032.61204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.692	1	13.38	12.88	13.88	-0.31202								0	0	0	0.8837	1	4480	4480		0.69038	0	1				39025	3217	24983	25108	37571	37571					0.09703531444847613
YKKIIKRLLKS	11	Unmodified	_YKKIIKRLLKS_					0	0	0		CON__P02777	CON__P02777	CON__P02777	MSMS	HCT116MG_D190212_S2	2	695.4690551757812	2	695.468847	1388.92314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.658	1	63.535	63.035	64.035	-0.12264								0	0	0	0.96208	1	24673	24673		0	0	1			+	39026	556	24984	25109	37572	37572					0.24423601029889142
YKKILAKIKY	10	Unmodified	_YKKILAKIKY_					0	0	0			REV__MX1|p.T200A|1|0.14|ENSG00000157601|chr21:41440893-41440893|A/G|missense_variant	REV__MX1|p.T200A|1|0.14|ENSG00000157601|chr21:41440893-41440893|A/G|missense_variant	MSMS	HCT116MG_D190212_S3	3	423.27532958984375	3	423.27607	1266.80638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.027	1	56.748	56.248	57.248	-0.27913								0	0	0	0.96804	1	21663	21663		0.69767	0	1		+		39027	17046	24985	25110	37573	37573					0.18364862810130944
YKKILAKIKY	10	Unmodified	_YKKILAKIKY_					0	0	0			REV__MX1|p.T200A|1|0.14|ENSG00000157601|chr21:41440893-41440893|A/G|missense_variant	REV__MX1|p.T200A|1|0.14|ENSG00000157601|chr21:41440893-41440893|A/G|missense_variant	MSMS	HCT116MG_D190212_S4	4	423.27532958984375	3	423.27607	1266.80638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.874	1	53.545	53.045	54.045	-0.32923								0	0	0	0.96804	1	20127	20127		0.69767	0	1		+		39028	17046	24985	25110	37574	37574					0.18364862810130944
YKKILLKLSGE	11	Unmodified	_YKKILLKLSGE_					0	0	0		tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1	tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1	tr|U7SFQ8|U7SFQ8_FUSNUUridylatekinaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=pyrHPE=3SV=1	MSMS	HCT116MG_D190212_S2	2	646.4010620117188	2	646.402838	1290.79112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.504	1	58.334	57.834	58.834	-0.1703								0	0	0	0.9598	1	22612	22612		1.1933	0.735	1				39029	18291	24986	25111	37575	37575					0.1573595122226834
YKKKRKRKQRK	11	Unmodified	_YKKKRKRKQRK_					0	0	0			REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	REV__ASH1L|p.S2309Ifs*11|1|0.64|ENSG00000116539|chr1:155357635-155357636|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	774.00927734375	2	774.010067	1546.00558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.349	1	15.349	14.849	15.849	0								0	0	0	0.95954	1	5093	5093		1.3295	0	1		+		39030	9992	24987	25112	37576	37576					0.25441935881372046
YKKLLKKKP	9	Unmodified	_YKKLLKKKP_					0	0	0		ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MSMS	HCT116MG_D190212_S3	3	573.3933715820312	2	573.392077	1144.7696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.861	1	31.591	31.091	32.091	-0.27028								0	0	0	0.76967	1	11656	11656		2.0598	0.21551	1				39031	4030	24988	25113	37577	37577					0.20300610984213563
YKLIVKIY	8	Unmodified	_YKLIVKIY_					0	0	0			REV__ENST00000564781.1_1_16:68057459-68071937:+|nuORF	REV__ENST00000564781.1_1_16:68057459-68071937:+|nuORF	MSMS	HCT116MG_D190212_S1	1	520.3335571289062	2	520.331153	1038.64775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.217	1	52.217	51.717	52.717	0								0	0	0	0.8837	1	19966	19966		2.8892	0	1		+		39032	16524	24989	25114	37578	37578					0.12997568901846535
YKLKINKSKKI	11	Unmodified	_YKLKINKSKKI_					0	0	0			REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	MSMS	HCT116MG_D190212_S1	1	681.9454345703125	2	681.945205	1361.87586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.191	1	14.191	13.691	14.691	0								0	0	0	0.96208	1	4631	4631		0	0	1		+		39033	15384	24990	25115	37579	37579					0.20939321758851293
YKLLEKLKE	9	Unmodified	_YKLLEKLKE_					0	0	0		ENSG00000136492|ENST00000259008|BRIP1;nc|ENSG00000136492|Q9BX63-2|BRIP1	ENSG00000136492|ENST00000259008|BRIP1	ENSG00000136492|ENST00000259008|BRIP1	MSMS	HCT116MG_D190212_S4	4	388.57098388671875	3	388.572663	1162.69616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.402	1	55.084	54.584	55.584	-0.31774								0	0	0	0.76954	1	20743	20743		2.4985	0	1				39034	3419	24991	25116	37580	37580					0.1213201775105972
YKLLRMVL	8	Unmodified	_YKLLRMVL_					0	0	0		ENST00000450775.2_1_16:727650-727704:+|nuORF;ENSG00000103269|ENST00000352681|RHBDL1;nc|ENSG00000103269|O75783|RHBDL1	ENST00000450775.2_1_16:727650-727704:+|nuORF	ENST00000450775.2_1_16:727650-727704:+|nuORF	MSMS	HCT116MG_D190212_S2	2	518.3235473632812	2	518.322805	1034.63106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.329	1	60.175	59.675	60.675	-0.15441								0	0	0	0.8837	1	23347	23347		0.69038	0	1				39035	1887	24992	25117	37581	37581					0.11512744744231895
YKRIFVGRGD	10	Unmodified	_YKRIFVGRGD_					0	0	0		ENST00000327490.7_1_17:74266582-74266804:+|nuORF	ENST00000327490.7_1_17:74266582-74266804:+|nuORF	ENST00000327490.7_1_17:74266582-74266804:+|nuORF	MSMS	HCT116MG_D190212_S1	1	404.2279052734375	3	404.22789	1209.66184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.304	1	57.304	56.804	57.804	0								0	0	0	0.96337	1	22048	22048		1.7423	0	1				39036	7143	24993	25118	37582	37582					0.06539614382859327
YKRKRKLPILC	11	Unmodified	_YKRKRKLPILC_					0	0	0			REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	MULTI-MSMS	HCT116MG_D190212_S4	4	709.4454345703125	2	709.444849	1416.87514	0.92874	0.00065889	0.94914	0.00067336	1.8779	0.0013323	709.4452954582868	56.6	0.31321	56.294	56.148	56.461	-0.30626					11	5	3	0	0	0	0.74191	1	21241	21241		1.4819	0.28856	1	2627200	+		39037	13141	24994	25119	37583	37583					0.18338203838197842
YKRKRKLPILC	11	Unmodified	_YKRKRKLPILC_					0	0	0			REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	709.444849	1416.87514	0.77045	0.00054659	1.0991	0.00077974	1.8695	0.0013263	709.445471637256	56.32	0.56678	56.32	56.119	56.686	0	0.01303	1.4223E-05	NaN	1.4819	32	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48403000	+		39038	13141	24994	25119							0.18338203838197842
YKRKRKLPILC	11	Unmodified	_YKRKRKLPILC_					0	0	0			REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	REV__nc|ENSG00000167210|Q8IVV2-4|LOXHD1	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	709.444849	1416.87514	0.92874	0.00065889	0.94914	0.00067336	1.8779	0.0013323	709.4452954582868	56.6	0.31321	56.294	56.148	56.461	-0.30626	-0.01303	-0.00019853	NaN	1.4819	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2627200	+		39039	13141	24994	25119							0.18338203838197842
YKRRLTNKL	9	Unmodified	_YKRRLTNKL_					0	0	0			REV__ENST00000398497.2_1_21:43422514-43422670:-|nuORF	REV__ENST00000398497.2_1_21:43422514-43422670:-|nuORF	MSMS	HCT116MG_D190212_S1	1	596.3693237304688	2	596.369664	1190.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.011	1	60.011	59.511	60.511	0								0	0	0	0.7701	1	23126	23126		0.52476	0	1		+		39040	15376	24995	25120	37584	37584					0.13704180170884683
YKRRNLGRQRR	11	Unmodified	_YKRRNLGRQRR_					0	0	0			REV__TFPT|p.E76G|1|0.29|ENSG00000105619|chr19:54114497-54114497|T/C|missense_variant	REV__TFPT|p.E76G|1|0.29|ENSG00000105619|chr19:54114497-54114497|T/C|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	501.6344299316406	3	501.634424	1501.88144	0.48176	0.00024167	-0.016206	-8.1296E-06	0.46556	0.00023354	501.63430865752673	53.105	0.87358	53.105	52.485	53.359	0					54	16	5	0	0	0	0.74191	1	20384	20384		0.45452	0.35968	1	93713000	+		39041	17629	24996	25121	37585	37585					0.15057858113914335
YKVLRSRPI	9	Unmodified	_YKVLRSRPI_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MSMS	HCT116MG_D190212_S3	3	566.3536987304688	2	566.353483	1130.69241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.242	1	57.973	57.473	58.473	-0.26932								0	0	0	0.7696	1	22151	22151		2.3027	0	1		+		39042	13457	24997	25122	37586	37586					0.13229392767902937
YKVRKNYGR	9	Unmodified	_YKVRKNYGR_					0	0	0			REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	REV__ASPM|p.I3229Nfs*2|1|0.48|ENSG00000066279|chr1:197090339-197090340|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	395.2289123535156	3	395.228001	1182.66217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.804	1	55.517	55.017	56.017	-0.28773								0	0	0	0.76995	1	21171	21171		1.0715	0.3738	1		+		39043	9993	24998	25123	37587	37587					0.07815034102668506
YKYRPVSIPV	10	Unmodified	_YKYRPVSIPV_					0	0	0			REV__SNX27|p.H172Y|1|0.15|ENSG00000143376|chr1:151639090-151639090|C/T|missense_variant	REV__SNX27|p.H172Y|1|0.15|ENSG00000143376|chr1:151639090-151639090|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	611.3557739257812	2	611.353148	1220.69174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.799	1	49.436	48.936	49.936	-0.36213								0	0	0	0.96453	1	18483	18483		1.4819	0	1		+		39044	17540	24999	25124	37588	37588					0.09022553328168215
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	HCT116MG_D190212_S2	2	542.8096923828125	2	542.307875	1082.6012	0.58259	0.00031594	0.14369	7.7923E-05	0.72628	0.00039387	542.3077840017403	56.734	0.26563	56.555	56.421	56.687	-0.17904					9	4	4	0	0	0	0.05892	1	21900	21900		70.332	14.829	1	31794000			39045	6527	25000	25125	37589	37589					0.06320084279900584
YLAEEYHQDYL	11	Unmodified	_YLAEEYHQDYL_					0	0	0		tr|U7T2D8|U7T2D8_FUSNUPeptidemethioninesulfoxidereductaseMsrAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrAPE=3SV=1	tr|U7T2D8|U7T2D8_FUSNUPeptidemethioninesulfoxidereductaseMsrAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrAPE=3SV=1	tr|U7T2D8|U7T2D8_FUSNUPeptidemethioninesulfoxidereductaseMsrAOS=FusobacteriumnucleatumCTI-5OX=1316586GN=msrAPE=3SV=1	MULTI-MSMS	HCT116MG_D190212_S4	4	722.8263549804688	2	722.324982	1442.63541	0.96878	0.00069978	-0.95755	-0.00069167	0.011228	8.1103E-06	722.3244332596112	24.74	0.25942	24.471	24.341	24.601	-0.26881					12	4	3	0	0	0	0.68267	1	8746	8746		26.268	4.7312	1	12228000			39046	18574	25001	25126	37590	37590					-0.06820164089799619
YLCCKVQGNFK	11	Unmodified	_YLCCKVQGNFK_					0	0	0		ENST00000262394.6_2_17:25639733-25639799:+|nuORF	ENST00000262394.6_2_17:25639733-25639799:+|nuORF	ENST00000262394.6_2_17:25639733-25639799:+|nuORF	MSMS	HCT116MG_D190212_S1	1	434.8822021484375	3	434.882626	1301.62605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3681	1	2.3681	1.8681	2.8681	0								0	0	0	0.9598	1	717	717		0.40827	0	1				39047	6863	25002	25127	37591	37591					-0.012699271806923207
YLCWAQEIL	9	Unmodified	_YLCWAQEIL_					0	0	0			REV__MFSD8|p.S402L|1|0.55|ENSG00000164073|chr4:127921669-127921669|G/A|missense_variant	REV__MFSD8|p.S402L|1|0.55|ENSG00000164073|chr4:127921669-127921669|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	380.1913146972656	3	380.191565	1137.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.269	1	28.269	27.769	28.769	0								0	0	0	0.7694	1	10292	10292		2.9952	0	1		+		39048	17025	25003	25128	37592	37592					-0.010407326316681065
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	571.77490234375	2	571.274229	1140.53391	0.064484	3.6838E-05	-0.0015445	-8.8235E-07	0.06294	3.5956E-05	571.2742894720482	40.484	0.25903	40.484	40.332	40.591	0					11	4	3	0	0	0	0.0059958	1	15216	15216		128.93	80.587	1	63686000			39049	3106	25004	25129	37593	37593					-0.030739907217139262
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	571.2745361328125	2	571.274229	1140.53391	0.55438	0.0003167	0.18087	0.00010333	0.73525	0.00042003	571.274251197596	40.511	0.51608	40.441	40.209	40.725	-0.069626					30	9	5	0	0	0	0.0046822	2	15260	15252;15260		140.63	92.287	1	517880000			39050	3106	25004	25129	37594;37595	37595					-0.030739907217139262
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	1141.5423583984375	1	1141.54118	1140.53391	0.74418	0.00084951	0.10864	0.00012402	0.85283	0.00097354	1141.5409397586566	40.511	0.30989	40.442	40.261	40.571	-0.069626					11	5	3	0	0	0	0.0082095	1	15280	15280		117.76	69.415	1	61243000			39051	3106	25004	25129	37596	37596					-0.030739907217139262
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	571.2743530273438	2	571.274229	1140.53391	0.61688	0.00035241	-0.13003	-7.4284E-05	0.48685	0.00027812	571.2740561020005	40.751	0.52114	40.45	40.215	40.736	-0.30161					26	9	5	0	0	0	0.0046822	1	15118	15118		140.63	100.68	1	140510000			39052	3106	25004	25129	37597	37597					-0.030739907217139262
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	HCT116MG_D190212_S4	4	571.274658203125	2	571.274229	1140.53391	0.62288	0.00035583	-0.1053	-6.0155E-05	0.51758	0.00029568	571.2740602239081	40.849	0.38885	40.471	40.286	40.675	-0.37779					20	7	4	0	0	0	0.0059958	2	14982	14982;15030		128.93	85.074	1	36251000			39053	3106	25004	25129	37598;37599	37598					-0.030739907217139262
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1141.54118	1140.53391	0.57729	0.000659	0.40421	0.00046142	0.9815	0.0011204	1141.541551610197	40.751	0.15636	40.45	40.319	40.476	-0.30161	0.0038635	5.0191E-05	NaN	117.76	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5064600			39054	3106	25004	25129							-0.030739907217139262
YLDESKQLY	9	Unmodified	_YLDESKQLY_					0	0	0		ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	579.7877807617188	2	579.787504	1157.56045	0.85555	0.00049604	0.7159	0.00041507	1.5715	0.00091111	579.7877378124876	35.914	0.25816	35.786	35.658	35.916	-0.12799					6	4	2	0	0	0	0.29516	1	13451	13451		31.268	3.6395	1	12438000			39055	4347	25005	25130	37600	37600					-0.012023018303580102
YLDKEDTFFY	10	Unmodified	_YLDKEDTFFY_					0	0	0		MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant	MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	670.8060913085938	2	670.805894	1339.59723	0.31344	0.00021026	0.19075	0.00012796	0.50419	0.00033822	670.805841237796	51.345	0.41198	51.166	50.966	51.378	-0.17869					15	7	3	0	0	0	0.035798	1	19692	19692		97.741	61.614	1	70681000			39056	1094	25006	25131	37601	37601					-0.058980500044981454
YLDKEDTFFY	10	Unmodified	_YLDKEDTFFY_					0	0	0		MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant	MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	670.805894	1339.59723	0.56798	0.000381	0.227	0.00015228	0.79498	0.00053328	670.8063909841945	51.096	0.25874	51.096	50.936	51.194	0	-0.057438	9.9904E-05	NaN	97.741	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8490700			39057	1094	25006	25131							-0.058980500044981454
YLDKEDTFFY	10	Unmodified	_YLDKEDTFFY_					0	0	0		MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant;MTA3|p.G456Lfs*48|1|0.05|ENSG00000057935|chr2:42708935-42708936|-/ATTACTG|frameshift_variant;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant	MTA3|p.K285Nfs*19|1|0.21|ENSG00000057935|chr2:42682549-42682549|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	670.805894	1339.59723	0.80436	0.00053957	0.013146	8.8183E-06	0.8175	0.00054839	671.3075991422882	51.51	0.26267	51.199	51.015	51.277	-0.31166	0.04499	-0.00018701	NaN	97.741	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4329200			39058	1094	25006	25131							-0.058980500044981454
YLDKGILKY	9	Unmodified	_YLDKGILKY_					0	0	0		nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;OSBPL3|p.S626Qfs*26|1|0.12|ENSG00000070882|chr7:24830776-24830776|A/-|frameshift_variant	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-MSMS	HCT116MG_D190212_S2	2	557.3228149414062	2	556.82115	1111.62775	0.26078	0.00014521	0.41738	0.00023241	0.67816	0.00037761	556.821193162331	38.709	0.31393	38.624	38.492	38.806	-0.084618					11	5	3	0	0	0	0.0034381	1	14551	14551		160.69	78.799	1	87155000			39059	1246	25007	25132	37602	37602					0.07639773171240449
YLDKGILKY	9	Unmodified	_YLDKGILKY_					0	0	0		nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;OSBPL3|p.S626Qfs*26|1|0.12|ENSG00000070882|chr7:24830776-24830776|A/-|frameshift_variant	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-MSMS	HCT116MG_D190212_S2	2	371.54974365234375	3	371.549859	1111.62775	-0.29687	-0.0001103	0.065853	2.4468E-05	-0.23102	-8.5834E-05	371.549877187268	38.709	0.3171	38.624	38.437	38.754	-0.084618					8	5	2	0	0	0	0.016744	1	14554	14554		81.915	48.47	1	38216000			39060	1246	25007	25132	37603	37603					0.07639773171240449
YLDKGILKY	9	Unmodified	_YLDKGILKY_					0	0	0		nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;OSBPL3|p.S626Qfs*26|1|0.12|ENSG00000070882|chr7:24830776-24830776|A/-|frameshift_variant	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-MSMS	HCT116MG_D190212_S3	3	556.8213500976562	2	556.82115	1111.62775	0.33756	0.00018796	0.21917	0.00012204	0.55673	0.00031	556.8212937275614	38.991	0.25974	38.69	38.508	38.768	-0.30137					11	4	3	0	0	0	0.0082095	1	14464	14464		117.76	59.082	1	15855000			39061	1246	25007	25132	37604	37604					0.07639773171240449
YLDKGILKY	9	Unmodified	_YLDKGILKY_					0	0	0		nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;OSBPL3|p.S626Qfs*26|1|0.12|ENSG00000070882|chr7:24830776-24830776|A/-|frameshift_variant	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-MSMS	HCT116MG_D190212_S3	3	371.54974365234375	3	371.549859	1111.62775	-0.1417	-5.2647E-05	-0.33911	-0.000126	-0.4808	-0.00017864	371.5496898344347	38.973	0.20755	38.672	38.561	38.768	-0.30137					6	3	2	0	0	0	0.21258	1	14468	14468		30.703	17.089	1	6946300			39062	1246	25007	25132	37605	37605					0.07639773171240449
YLDKGILKY	9	Unmodified	_YLDKGILKY_					0	0	0		nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;OSBPL3|p.S626Qfs*26|1|0.12|ENSG00000070882|chr7:24830776-24830776|A/-|frameshift_variant	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	nc|ENSG00000070882|Q9H4L5-4|OSBPL3	MULTI-MSMS	HCT116MG_D190212_S4	4	556.8212280273438	2	556.82115	1111.62775	0.31676	0.00017638	-0.36452	-0.00020297	-0.047762	-2.6595E-05	556.8208539747345	39.066	0.22341	38.686	38.592	38.815	-0.38055					7	4	2	0	0	0	0.012531	1	14357	14357		107.1	48.421	1	4832700			39063	1246	25007	25132	37606	37606					0.07639773171240449
YLDKVRALE	9	Unmodified	_YLDKVRALE_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P08779;CON__Q3ZAW8;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;CON__Q99456;CON__Q9Z2K1;ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5;CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	CON__P08727;CON__P08730-1;CON__P19001;ENSG00000128422|ENST00000311208|KRT17	CON__P08727	MULTI-MSMS	HCT116MG_D190212_S1	1	553.8139038085938	2	553.813856	1105.61316	0.62598	0.00034667	0.012274	6.7977E-06	0.63825	0.00035347	553.8137157515948	32.892	0.29427	32.892	32.742	33.037	0					9	5	2	0	0	0	0.012343	1	12155	12155		107.56	51.386	1	10178000		+	39064	559;563;534;567	25008	25133	37607	37607					0.06457701023077789
YLDKVRALE	9	Unmodified	_YLDKVRALE_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P08779;CON__Q3ZAW8;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.G291Efs*75|1|0.45|ENSG00000187242|chr17:40863802-40863802|G/-|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000187242|ENST00000251643|KRT12;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;CON__Q99456;CON__Q9Z2K1;ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5;CON__P08730-1;CON__A2A4G1;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P19001;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9QWL7	CON__P08727;CON__P08730-1;CON__P19001;ENSG00000128422|ENST00000311208|KRT17	CON__P08727	MSMS	HCT116MG_D190212_S2	2	553.8145751953125	2	553.813856	1105.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.138	1	32.926	32.426	33.426	-0.21135								0	0	0	0.19493	1	12285	12285		47.732	11.605	1			+	39065	559;563;534;567	25008	25133	37608	37608					0.06457701023077789
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	HCT116MG_D190212_S2	2	1025.5311279296875	1	1025.53022	1024.52295	0.56891	0.00058343	0.16166	0.00016579	0.73057	0.00074922	1025.5303197129222	55.431	0.25542	55.246	55.072	55.327	-0.18565					9	4	3	0	0	0	0.042978	1	21380	21380		78.149	20.678	1	54284000			39066	4969	25009	25134	37609	37609					0.011666516946661432
YLDNVIGHSY	10	Unmodified	_YLDNVIGHSY_					0	0	0		ENST00000473131.5_1_20:5924535-5931132:-|nuORF;TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	590.7852783203125	2	590.785296	1179.55604	0.942	0.00055652	-0.0079648	-4.7055E-06	0.93404	0.00055182	590.7850272252491	41.472	0.2606	41.472	41.289	41.55	0					7	4	2	0	0	0	0.00022982	1	15620	15620		192.32	126.85	1	24409000			39067	1521	25010	25135	37610	37610					-0.02655766253269576
YLDNVIGHSY	10	Unmodified	_YLDNVIGHSY_					0	0	0		ENST00000473131.5_1_20:5924535-5931132:-|nuORF;TRMT6|p.K295Nfs*64|1|0.37|ENSG00000089195|chr20:5942569-5942569|T/-|frameshift_variant;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MSMS	HCT116MG_D190212_S2	2	590.7863159179688	2	590.785296	1179.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.502	1	41.433	40.933	41.933	-0.068199								0	0	0	0.33543	1	15683	15683		57.249	33.229	1				39068	1521	25010	25135	37611	37611					-0.02655766253269576
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MSMS	HCT116MG_D190212_S2	2	509.76953125	2	509.769448	1017.52434	0.18512	9.4368E-05	0.30087	0.00015337	0.48599	0.00024774	509.76944170363504	30.749	0.25916	30.482	30.353	30.612	-0.26704					8	4	3	0	0	0	0.26536	2	11347	11331;11347		34.402	10.106	1	15908000			39069	3099	25011	25136	37612;37613	37613					0.01628285783431238
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MATCH	HCT116MG_D190212_S3	3		2	509.769448	1017.52434	0.099706	5.0827E-05	-0.49484	-0.00025226	-0.39514	-0.00020143	509.7688621307202	30.854	0.25764	30.593	30.399	30.656	-0.26071	0.055405	-0.00064078	NaN	34.402	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3451000			39070	3099	25011	25136							0.01628285783431238
YLDPVQRDL	9	Unmodified	_YLDPVQRDL_					0	0	0		nc|ENSG00000197343|Q8N720-2|ZNF655;ENST00000467680.5_1_7:99159903-99161679:+|nuORF	nc|ENSG00000197343|Q8N720-2|ZNF655	nc|ENSG00000197343|Q8N720-2|ZNF655	MULTI-MSMS	HCT116MG_D190212_S3	3	559.7972412109375	2	559.795663	1117.57677	0.58959	0.00033005	0.001851	1.0362E-06	0.59144	0.00033108	559.7957282342098	40.959	0.36471	40.658	40.371	40.736	-0.30185					10	6	2	0	0	0	0.11363	1	15200	15200		55.503	11.644	1	3605000			39071	9599	25012	25137	37614	37614					0.022688241263722375
YLDPVQRDL	9	Unmodified	_YLDPVQRDL_					0	0	0		nc|ENSG00000197343|Q8N720-2|ZNF655;ENST00000467680.5_1_7:99159903-99161679:+|nuORF	nc|ENSG00000197343|Q8N720-2|ZNF655	nc|ENSG00000197343|Q8N720-2|ZNF655	MULTI-MATCH	HCT116MG_D190212_S2	2		2	559.795663	1117.57677	0.57507	0.00032192	1.4198	0.00079481	1.9949	0.0011167	559.7965320206114	40.664	0.36029	40.594	40.365	40.725	-0.069626	-0.031674	0.00089049	NaN	55.503	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34909000			39072	9599	25012	25137							0.022688241263722375
YLELYMPCPT	10	Unmodified	_YLELYMPCPT_					0	0	0		tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	tr|U7T5K0|U7T5K0_FUSNUelongationfactorGOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00176PE=3SV=1	MSMS	HCT116MG_D190212_S3	3	615.2811889648438	2	615.282686	1228.55082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.037	1	22.038	21.538	22.538	0.00074577								0	0	0	0.92607	1	7710	7710		10.074	1.3285	1				39073	18630	25013	25138	37615	37615					-0.05431529431780291
YLERVQALHSA	11	Unmodified	_YLERVQALHSA_					0	0	0		CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant;ENSG00000131375|ENST00000253693|CAPN7	CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	CAPN7|p.K253Nfs*21|1|0.35|ENSG00000131375|chr3:15227870-15227870|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	643.8467407226562	2	643.846219	1285.67788	0.57199	0.00036828	-0.41174	-0.0002651	0.16025	0.00010318	643.8460749815218	32.404	0.20842	32.404	32.274	32.482	0					5	3	2	0	0	0	0.71182	1	11961	11961		17.443	0.87677	1	8001500			39074	323	25014	25139	37616	37616					0.046472758290974525
YLFFKNAP	8	Unmodified	_YLFFKNAP_					0	0	0			REV__ENST00000392328.5_1_2:191301228-191301342:+|nuORF	REV__ENST00000392328.5_1_2:191301228-191301342:+|nuORF	MSMS	HCT116MG_D190212_S1	1	499.8032531738281	2	500.268553	998.522553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.243	1	19.243	18.743	19.743	0								0	0	0	0.8837	1	6662	6662		10.183	0	1		+		39075	15308	25015	25140	37617	37617					0.02323276765469018
YLFHVQEV	8	Unmodified	_YLFHVQEV_					0	0	0		ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	MULTI-SECPEP	HCT116MG_D190212_S2	2	518.2540283203125	2	517.768917	1033.52328	0.45829	0.00023729	0.071688	3.7118E-05	0.52998	0.00027441	517.7687375755044	47.473	0.15456	47.351	47.233	47.388	-0.12175					4	2	2	0	0	0	0.12799	1	18102	18102		71.134	31.176	1	6845100			39076	3359	25016	25141	37618	37618					0.007860714145181191
YLFLLLLLLI	10	Unmodified	_YLFLLLLLLI_					0	0	0		ENST00000352393.8_2_20:34213985-34214111:-|nuORF	ENST00000352393.8_2_20:34213985-34214111:-|nuORF	ENST00000352393.8_2_20:34213985-34214111:-|nuORF	MSMS	HCT116MG_D190212_S4	4	411.94561767578125	3	411.945549	1232.81482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.564	1	15.403	14.903	15.903	-0.16173								0	0	0	0.97116	1	5027	5027		0	0	1				39077	7278	25017	25142	37619	37619					0.2077241672677701
YLGEDYKDR	9	Unmodified	_YLGEDYKDR_					0	0	0			REV__DCLRE1A|p.K636Rfs*31|1|0.2|ENSG00000198924|chr10:113849198-113849198|T/-|frameshift_variant	REV__DCLRE1A|p.K636Rfs*31|1|0.2|ENSG00000198924|chr10:113849198-113849198|T/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	386.5351867675781	3	386.852377	1157.5353	-0.056751	-2.1954E-05	-0.20233	-7.8271E-05	-0.25908	-0.00010023	386.85214965005537	21.319	0.20627	20.936	20.807	21.013	-0.38288					7	3	3	0	0	0	0.25734	1	7526	7526		10.151	0	1	13456000	+		39078	10340	25018	25143	37620	37620					-0.037163566329581954
YLGPHIASV	9	Unmodified	_YLGPHIASV_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MSMS	HCT116MG_D190212_S2	2	478.763427734375	2	478.763635	955.512717	0.35908	0.00017192	0.012567	6.0167E-06	0.37165	0.00017793	478.7635636723797	40.356	0.25987	40.284	40.102	40.361	-0.072838					6	4	2	0	0	0	0.065014	1	15242	15242		67.344	20.423	1	17317000			39079	1123	25019	25144	37621	37621					0.03318088760090632
YLGPHIASV	9	Unmodified	_YLGPHIASV_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	478.763635	955.512717	0.26631	0.0001275	-0.18092	-8.6619E-05	0.085383	4.0878E-05	478.7635838703911	40.555	0.15611	40.253	40.163	40.319	-0.30161	-0.015194	-5.7083E-05	NaN	67.344	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2001700			39080	1123	25019	25144							0.03318088760090632
YLGRLAHEV	9	Unmodified	_YLGRLAHEV_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S1	1	529.7952880859375	2	529.293091	1056.57163	0.25728	0.00013618	0.139	7.3573E-05	0.39629	0.00020975	529.2931735132412	31.913	0.31308	31.913	31.753	32.066	0					15	5	4	0	0	0	0.0053819	2	11751	11751;11768		134.3	72.938	1	27803000			39081	3762	25020	25145	37622;37623	37622					0.045605650544075615
YLGRLAHEV	9	Unmodified	_YLGRLAHEV_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S1	1	353.19757080078125	3	353.197819	1056.57163	-0.14555	-5.1407E-05	0.024123	8.5202E-06	-0.12142	-4.2887E-05	353.19767474622506	31.928	0.20871	31.928	31.805	32.014	0					7	3	3	0	0	0	0.12205	1	11774	11774		42.312	9.5268	1	13099000			39082	3762	25020	25145	37624	37624					0.045605650544075615
YLGRLAHEV	9	Unmodified	_YLGRLAHEV_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S2	2	529.2936401367188	2	529.293091	1056.57163	0.44355	0.00023477	0.14085	7.455E-05	0.5844	0.00030932	529.2930782930392	32.2	0.31182	31.97	31.838	32.15	-0.23009					16	5	4	0	0	0	0.0035147	1	11907	11907		168.66	79.232	1	150010000			39083	3762	25020	25145	37625	37625					0.045605650544075615
YLGRLAHEV	9	Unmodified	_YLGRLAHEV_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	HCT116MG_D190212_S2	2	353.1980285644531	3	353.197819	1056.57163	-0.12316	-4.3498E-05	0.16929	5.9792E-05	0.046131	1.6293E-05	353.1978337662692	32.199	0.20797	31.969	31.838	32.046	-0.23009					8	3	3	0	0	0	0.047849	1	11915	11915		61.09	20.851	1	52927000			39084	3762	25020	25145	37626	37626					0.045605650544075615
YLHNQGIGV	9	Unmodified	_YLHNQGIGV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	HCT116MG_D190212_S1	1	500.7645263671875	2	500.764166	999.513779	0.5738	0.00028734	0.0026612	1.3326E-06	0.57646	0.00028867	500.7640463300202	33.083	0.20811	33.083	32.985	33.193	0					6	3	2	0	0	0	0.026974	1	12248	12248		89.427	39.758	1	7469700			39085	4306	25021	25146	37627	37627					0.014003031290144463
YLHNQGIGV	9	Unmodified	_YLHNQGIGV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	HCT116MG_D190212_S2	2	500.7644958496094	2	500.764166	999.513779	0.74783	0.00037448	-0.24853	-0.00012445	0.4993	0.00025003	500.76396325838897	33.392	0.30806	33.2	33.019	33.327	-0.19297					11	5	3	0	0	0	0.014796	1	12397	12397		101.72	41.927	1	35106000			39086	4306	25021	25146	37628	37628					0.014003031290144463
YLHSQVVSV	9	Unmodified	_YLHSQVVSV_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	HCT116MG_D190212_S2	2	515.8111572265625	2	516.279649	1030.54475	0.25248	0.00013035	0.28217	0.00014568	0.53465	0.00027603	516.2798014561378	35.153	0.20704	34.994	34.865	35.072	-0.15834					5	3	2	0	0	0	0.21258	1	13116	13116		39.95	12.321	1	19283000			39087	6325	25022	25147	37629	37629					0.030694564432451443
YLHYLYRRFK	10	Unmodified	_YLHYLYRRFK_					0	0	0			REV__ENSG00000168329|ENST00000399220|CX3CR1	REV__ENSG00000168329|ENST00000399220|CX3CR1	MSMS	HCT116MG_D190212_S3	3	729.9027709960938	2	729.903871	1457.79319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.317	1	56.034	55.534	56.534	-0.28367								0	0	0	0.91906	1	21377	21377		11.64	6.7433	1		+		39088	13196	25023	25148	37630	37630					0.08260424750710627
YLHYLYRRFK	10	Unmodified	_YLHYLYRRFK_					0	0	0			REV__ENSG00000168329|ENST00000399220|CX3CR1	REV__ENSG00000168329|ENST00000399220|CX3CR1	MSMS	HCT116MG_D190212_S4	4	729.9022827148438	2	729.903871	1457.79319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.493	1	53.159	52.659	53.659	-0.33473								0	0	0	0.93854	1	19974	19974		7.2892	1.9923	1		+		39089	13196	25023	25148	37631	37631					0.08260424750710627
YLHYLYRRFK	10	Unmodified	_YLHYLYRRFK_					0	0	0			REV__ENSG00000168329|ENST00000399220|CX3CR1	REV__ENSG00000168329|ENST00000399220|CX3CR1	MSMS	HCT116MG_D190212_S4	4	729.9025268554688	2	729.903871	1457.79319	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.459	1	56.153	55.653	56.653	-0.30626								0	0	0	0.93854	1	21165	21165		7.2892	1.0834	1		+		39090	13196	25023	25148	37632	37632					0.08260424750710627
YLIDLIFL	8	Unmodified	_YLIDLIFL_					0	0	0		tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	505.30157470703125	2	505.302062	1008.58957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.71	1	51.401	50.901	51.901	-0.30968								0	0	0	0.8837	1	19531	19531		5.7604	0	1				39091	18448	25024	25149	37633	37633					0.08561887256576028
YLIDLIFL	8	Unmodified	_YLIDLIFL_					0	0	0		tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	tr|U7STM4|U7STM4_FUSNUUncharacterizedproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01397PE=4SV=1	MSMS	HCT116MG_D190212_S4	4	505.3018798828125	2	505.302062	1008.58957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.718	1	51.368	50.868	51.868	-0.35028								0	0	0	0.8837	1	19257	19257		5.7604	0	1				39092	18448	25024	25149	37634	37634					0.08561887256576028
YLILHVAV	8	Unmodified	_YLILHVAV_					0	0	0			REV__ENST00000376655.1_1_1:11737515-11751604:-|nuORF	REV__ENST00000376655.1_1_1:11737515-11751604:-|nuORF	MSMS	HCT116MG_D190212_S1	1	464.28509521484375	2	464.286746	926.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.438	1	40.438	39.938	40.938	0								0	0	0	0.86899	1	15199	15199		17.087	1.2394	1		+		39093	11586	25025	25150	37635	37635					0.09272153662175242
YLILLIFLIT	10	Unmodified	_YLILLIFLIT_					0	0	0		tr|U7T3V8|U7T3V8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00278PE=3SV=1	tr|U7T3V8|U7T3V8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00278PE=3SV=1	tr|U7T3V8|U7T3V8_FUSNUSignalpeptidaseIOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00278PE=3SV=1	MSMS	HCT116MG_D190212_S2	2	407.93267822265625	3	407.933421	1220.77843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.8	1	64.688	64.188	65.188	-0.11256								0	0	0	0.97045	1	25048	25048		0.15932	0	1				39094	18611	25026	25151	37636	37636					0.17687539830035348
YLINEIDRI	9	Unmodified	_YLINEIDRI_					0	0	0		DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;ENSG00000151914|ENST00000680361|DST;DST|p.T4428Nfs*23|1|0.12|ENSG00000151914|chr6:56497896-56497897|-/T|frameshift_variant;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.N1220Tfs*9|1|0.23|ENSG00000151914|chr6:56630354-56630354|T/-|frameshift_variant;DST|p.L1539Ffs*11|1|0.39|ENSG00000151914|chr6:56611525-56611526|-/A|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.K5076Nfs*24|1|0.31|ENSG00000151914|chr6:56472218-56472218|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	574.8192138671875	2	574.819138	1147.62372	0.32107	0.00018456	-0.17562	-0.00010095	0.14545	8.3606E-05	574.8191387886646	52.927	0.25636	52.737	52.553	52.809	-0.18922					9	4	3	0	0	0	0.14362	1	20370	20370		49.554	19.714	1	15261000			39095	735;9500	25027	25152	37637	37637					0.055816836775193224
YLIRRMRIWRP	11	Unmodified	_YLIRRMRIWRP_					0	0	0			REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF	REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	520.975341796875	3	520.64164	1558.90309	0.50734	0.00026414	-0.31689	-0.00016499	0.19045	9.9159E-05	520.6413324930548	54.111	0.66292	54.111	53.822	54.485	0					24	12	3	0	0	0	0.74191	1	20751	20751		0.50596	0.41111	1	28585000	+		39096	16210	25028	25153	37638	37638					0.1459952681825598
YLKKLKTLRE	10	Unmodified	_YLKKLKTLRE_					0	0	0		LEMD3|p.K45T|1|0.28|ENSG00000174106|chr12:65169730-65169730|A/C|missense_variant	LEMD3|p.K45T|1|0.28|ENSG00000174106|chr12:65169730-65169730|A/C|missense_variant	LEMD3|p.K45T|1|0.28|ENSG00000174106|chr12:65169730-65169730|A/C|missense_variant	MSMS	HCT116MG_D190212_S4	4	646.4085693359375	2	646.408455	1290.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.365	1	60.099	59.599	60.599	-0.26582								0	0	0	0.96937	1	22743	22743		0.40072	0.050084	1				39097	9294	25029	25154	37639	37639					0.16858773316425868
YLKRFKVM	8	Unmodified	_YLKRFKVM_					0	0	0		nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant;WNK3|p.I1462Rfs*3|1|0.37|ENSG00000196632|chrX:54237181-54237182|-/TC|frameshift_variant;nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;WNK3|p.N1685Tfs*71|1|0.19|ENSG00000196632|chrX:54202010-54202010|T/-|frameshift_variant;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;nc|ENSG00000165238|Q9Y3S1-3|WNK2	nc|ENSG00000060237|Q9H4A3-2|WNK1;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	542.8208618164062	2	542.82043	1083.62631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.683	1	10.683	10.183	11.183	0								0	0	0	0.8837	1	3295	3295		0	0	1				39098	1107;4757	25030	25155	37640	37640					0.08783860601488414
YLKRFKVM	8	Unmodified	_YLKRFKVM_					0	0	0		nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;WNK3|p.R872Pfs*13|1|0.07|ENSG00000196632|chrX:54250092-54250093|-/AAAG|frameshift_variant;WNK3|p.I1462Rfs*3|1|0.37|ENSG00000196632|chrX:54237181-54237182|-/TC|frameshift_variant;nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;WNK3|p.N1685Tfs*71|1|0.19|ENSG00000196632|chrX:54202010-54202010|T/-|frameshift_variant;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant;WNK2|p.T1980Lfs*12|2|0.16|ENSG00000165238|chr9:93297965-93297965|C/-|frameshift_variant;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;nc|ENSG00000165238|Q9Y3S1-3|WNK2	nc|ENSG00000060237|Q9H4A3-2|WNK1;WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	WNK2|p.S1424Pfs*5|1|0.34|ENSG00000165238|chr9:93288908-93288908|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	542.8207397460938	2	542.82043	1083.62631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.266	1	11.266	10.766	11.766	0								0	0	0	0.8837	1	3530	3530		0	0	1				39099	1107;4757	25030	25155	37641	37641					0.08783860601488414
YLKVQVQFP	9	Unmodified	_YLKVQVQFP_					0	0	0			REV__ENSG00000136881|ENST00000259407|BAAT	REV__ENSG00000136881|ENST00000259407|BAAT	MULTI-SECPEP	HCT116MG_D190212_S1	1	561.2215576171875	2	561.321317	1120.62808	0.25659	0.00014403	-1.6858	-0.00094627	-1.4292	-0.00080224	561.3203935858618	48.691	0.25728	48.691	48.511	48.768	0					6	4	2	0	0	0	0.26911	1	18528	18528		2.3027	0	1	4287500	+		39100	12148	25031	25156	37642	37642					0.07259192891092425
YLLFFKQWILP	11	Unmodified	_YLLFFKQWILP_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MSMS	HCT116MG_D190212_S4	4	489.9512634277344	3	489.951475	1466.83259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.028	1	44.655	44.155	45.155	-0.37326								0	0	0	0.96111	1	16596	16596		0.50596	0	1		+		39101	12625	25032	25157	37643	37643					0.11785131981605446
YLLISTQIR	9	Unmodified	_YLLISTQIR_					0	0	0		nc|ENSG00000137880|P30047-2|GCHFR;ENSG00000137880|ENST00000260447|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	nc|ENSG00000137880|P30047-2|GCHFR	MSMS	HCT116MG_D190212_S3	3	553.8323364257812	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.187	1	33.893	33.393	34.393	-0.29419								0	0	0	0.76655	1	12575	12575		13.042	0	1				39102	3514	25033	25158	37644	37644					0.10094577919812764
YLLIVPVFIV	10	Unmodified	_YLLIVPVFIV_					0	0	0			REV__ENST00000307533.10_1_4:6676994-6677156:+|nuORF	REV__ENST00000307533.10_1_4:6676994-6677156:+|nuORF	MSMS	HCT116MG_D190212_S1	1	588.3762817382812	2	588.375561	1174.73657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.79	1	36.79	36.29	37.29	0								0	0	0	0.93576	1	13725	13725		7.9102	3.5809	1		+		39103	14817	25034	25159	37645	37645					0.15618984141519832
YLLKVMPK	8	Unmodified	_YLLKVMPK_					0	0	0			REV__TNFAIP1|p.V157M|1|0.35|ENSG00000109079|chr17:28341407-28341407|G/A|missense_variant	REV__TNFAIP1|p.V157M|1|0.35|ENSG00000109079|chr17:28341407-28341407|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	496.3038330078125	2	496.304081	990.59361	0.35734	0.00017735	-0.13727	-6.8127E-05	0.22007	0.00010922	496.3039361126638	45.097	2.1903	45.097	44.25	46.44	0					103	41	3	0	0	0	0.86564	1	17001	17001		2.5775	0	1	227400000	+		39104	17650	25035	25160	37646	37646					0.09793653478629949
YLLLELLSLM	10	Unmodified	_YLLLELLSLM_					0	0	0			REV__ECT2L|p.P703L|1|0.6|ENSG00000203734|chr6:138885679-138885679|C/T|missense_variant	REV__ECT2L|p.P703L|1|0.6|ENSG00000203734|chr6:138885679-138885679|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	604.353271484375	2	604.353968	1206.69338	0.37703	0.00022786	0.037538	2.2686E-05	0.41456	0.00025054	604.3538202459881	49.03	1.8989	49.03	47.696	49.595	0					51	36	2	0	0	0	0.88823	1	18779	18779		1.4819	1.4819	1	23776000	+		39105	10435	25036	25161	37647	37647					0.09830426301937223
YLLLRKILLR	10	Unmodified	_YLLLRKILLR_					0	0	0		nc|ENSG00000050628|P43115-3|PTGER3;nc|ENSG00000050628|P43115-4|PTGER3;nc|ENSG00000050628|P43115-2|PTGER3;ENSG00000050628|ENST00000306666|PTGER3;nc|ENSG00000050628|P43115-7|PTGER3;nc|ENSG00000050628|P43115-8|PTGER3;nc|ENSG00000050628|P43115-9|PTGER3;nc|ENSG00000050628|P43115-5|PTGER3;nc|ENSG00000050628|P43115-11|PTGER3;nc|ENSG00000050628|P43115-6|PTGER3;nc|ENSG00000050628|P43115-12|PTGER3;nc|ENSG00000050628|P43115-10|PTGER3	nc|ENSG00000050628|P43115-3|PTGER3	nc|ENSG00000050628|P43115-3|PTGER3	MSMS	HCT116MG_D190212_S1	1	650.9429931640625	2	650.945008	1299.87546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.941	1	32.941	32.441	33.441	0								0	0	0	0.96377	1	12173	12173		1.6526	1.2519	1				39106	1053	25037	25162	37648	37648					0.23751946829679582
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000100201|ENST00000403230|DDX17	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	519.8211059570312	2	519.820953	1037.62735	0.38485	0.00020005	0.049914	2.5946E-05	0.43476	0.000226	519.8208729542947	56.608	0.15463	56.608	56.531	56.686	0					4	2	2	0	0	0	0.11088	1	21789	21789		56.048	16.091	1	130100000			39107	656;1672	25038	25163	37649	37649					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000100201|ENST00000403230|DDX17	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	1039.4769287109375	1	1038.63463	1037.62735	0.77833	0.0008084	-0.35351	-0.00036717	0.42482	0.00044123	1038.6341812785479	56.734	0.21328	56.555	56.421	56.635	-0.17904					5	3	2	0	0	0	0.0062628	2	21888	21888;21923		126.6	80.85	1	19382000			39108	656;1672	25038	25163	37650;37651	37650					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000100201|ENST00000403230|DDX17	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	519.8211059570312	2	519.820953	1037.62735	0.40161	0.00020877	-0.12546	-6.5215E-05	0.27616	0.00014355	519.8208480893946	56.734	0.26563	56.555	56.421	56.687	-0.17904					15	4	5	0	0	0	0.039337	1	21895	21895		79.935	31.589	1	451960000			39109	656;1672	25038	25163	37652	37652					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;DDX5|p.R502Gfs*87|1|0.21|ENSG00000108654|chr17:64500264-64500264|T/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;DDX5|p.D424Ifs*31|1|0.03|ENSG00000108654|chr17:64500720-64500721|-/AAGCAATTAAT|frameshift_variant;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38888049-38902242:-|nuORF	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant;ENSG00000100201|ENST00000403230|DDX17	DDX5|p.D572Nfs*6|1|0.04|ENSG00000108654|chr17:64500054-64500055|-/TGACAAGATAGTT|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	519.8211059570312	2	519.820953	1037.62735	0.43713	0.00022723	0.019986	1.0389E-05	0.45711	0.00023762	519.8208972298141	56.826	0.20874	56.547	56.416	56.625	-0.27913					7	3	3	0	0	0	0.43045	1	21603	21603		20.871	6.2895	1	9354100			39110	656;1672	25038	25163	37653	37653					0.11004398242016578
YLLPHILVY	9	Unmodified	_YLLPHILVY_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	HCT116MG_D190212_S2	2	565.2510986328125	2	565.83406	1129.65357	0.5973	0.00033797	-0.093043	-5.2647E-05	0.50426	0.00028533	565.8340520184923	41.664	0.20676	41.595	41.498	41.705	-0.068195					5	3	2	0	0	0	0.26608	1	15789	15789		5.2307	3.3864	1	4462900			39111	5359	25039	25164	37654	37654					0.09392667413521849
YLNDHDAVTK	10	Unmodified	_YLNDHDAVTK_					0	0	0		nc|ENSG00000134532|P35711-3|SOX5;SOX5|p.K639Sfs*77|1|0.78|ENSG00000134532|chr12:23536525-23536525|T/-|frameshift_variant;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	nc|ENSG00000134532|P35711-3|SOX5	nc|ENSG00000134532|P35711-3|SOX5	MSMS	HCT116MG_D190212_S1	1	588.286376953125	2	588.288202	1174.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.527	1	39.527	39.027	40.027	0								0	0	0	0.94551	1	14831	14831		5.7319	0.83484	1				39112	3290	25040	25165	37655	37655					-0.018446677416250168
YLNVQVKEL	9	Unmodified	_YLNVQVKEL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MSMS	HCT116MG_D190212_S2	2	553.3162231445312	2	553.316232	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.845	1	43.767	43.267	44.267	-0.078373								0	0	0	0.35145	1	16636	16636		45.74	17.253	1				39113	2406	25041	25166	37656	37656					0.06978585165848017
YLNWYFLFH	9	Unmodified	_YLNWYFLFH_					0	0	0			REV__P2RY4|p.R112H|1|0.51|ENSG00000186912|chrX:70259290-70259290|C/T|missense_variant	REV__P2RY4|p.R112H|1|0.51|ENSG00000186912|chrX:70259290-70259290|C/T|missense_variant	MSMS	HCT116MG_D190212_S2	2	434.88232421875	3	434.88172	1301.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.394	1	63.271	62.771	63.771	-0.12264								0	0	0	0.77008	1	24574	24574		0.26902	0	1		+		39114	17379	25042	25167	37657	37657					-0.015416912516911907
YLPEDFIRV	9	Unmodified	_YLPEDFIRV_					0	0	0		IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant;IRAK2|p.Q391Sfs*2|1|0.38|ENSG00000134070|chr3:10222789-10222789|G/-|frameshift_variant;ENSG00000134070|ENST00000256458|IRAK2	IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant	IRAK2|p.A380T|1|0.08|ENSG00000134070|chr3:10222760-10222760|G/A|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	576.30859375	2	576.308406	1150.60226	0.3772	0.00021739	-0.21773	-0.00012548	0.15947	9.1905E-05	576.3082465679179	54.842	0.35909	54.654	54.457	54.816	-0.18797					12	6	2	0	0	0	0.28073	1	21154	21154		32.786	0.4802	1	24601000			39115	3262	25043	25168	37658	37658					0.03298298648792297
YLPGATAH	8	Unmodified	_YLPGATAH_					0	0	0			REV__UNC79|p.K1493Sfs*12|1|0.52|ENSG00000133958|chr14:93621704-93621704|A/-|frameshift_variant	REV__UNC79|p.K1493Sfs*12|1|0.52|ENSG00000133958|chr14:93621704-93621704|A/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	415.2137145996094	2	415.213778	828.413003	0.066276	2.7519E-05	0.18415	7.6462E-05	0.25043	0.00010398	415.2137842719592	24.478	0.36513	24.098	23.926	24.292	-0.38003					12	6	3	0	0	0	0.47906	1	8779	8779		42.968	22.097	1	33144000	+		39116	12042	25044	25169	37659	37659					-0.008067288538654793
YLPPATQVV	9	Unmodified	_YLPPATQVV_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	HCT116MG_D190212_S3	3	494.27911376953125	2	494.279118	986.543683	0.31472	0.00015556	-0.15294	-7.5593E-05	0.16179	7.9967E-05	494.27895834284055	42.474	0.46945	42.17	41.987	42.457	-0.30352					15	8	2	0	0	0	0.14171	1	15856	15856		49.933	20.851	1	4065600			39117	3727	25045	25170	37660	37660					0.049872420743326984
YLPRSPADP	9	Unmodified	_YLPRSPADP_					0	0	0		SLC12A9|p.P876S|1|0.16|ENSG00000146828|chr7:100866486-100866486|C/T|missense_variant	SLC12A9|p.P876S|1|0.16|ENSG00000146828|chr7:100866486-100866486|C/T|missense_variant	SLC12A9|p.P876S|1|0.16|ENSG00000146828|chr7:100866486-100866486|C/T|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	509.2401123046875	2	508.263999	1014.51345	0.22382	0.00011376	0.15554	7.9055E-05	0.37936	0.00019281	508.26419252134804	30.85	1.4441	30.583	29.581	31.025	-0.26704					38	27	2	0	0	0	0.32162	1	11355	11355		28.487	1.6032	1	12502000			39118	18155	25046	25171	37661	37661					0.006768834091303688
YLPVLAWVFV	10	Unmodified	_YLPVLAWVFV_					0	0	0		nc|ENSG00000150556|Q8NI32|LYPD6B;ENSG00000150556|ENST00000409642|LYPD6B;ENST00000498249.1_1_2:150061334-150071221:+|nuORF	nc|ENSG00000150556|Q8NI32|LYPD6B	nc|ENSG00000150556|Q8NI32|LYPD6B	MSMS	HCT116MG_D190212_S1	1	402.9022216796875	3	402.902232	1205.68487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.337	1	11.337	10.837	11.837	0								0	0	0	0.97116	1	3559	3559		0	0	1				39119	4086	25047	25172	37662	37662					0.09025240447590477
YLQPRKMV	8	Unmodified	_YLQPRKMV_					0	0	0			REV__ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant	REV__ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	517.2929077148438	2	517.794412	1033.57427	0.25234	0.00013066	0.31957	0.00016547	0.57191	0.00029613	517.7946915213304	31.009	0.25856	30.742	30.612	30.87	-0.26704					8	4	2	0	0	0	0.30703	1	11445	11445		12.532	3.1841	1	29714000	+		39120	9984	25048	25173	37663	37663					0.05882697187735175
YLQPRKMV	8	Unmodified	_YLQPRKMV_					0	0	0			REV__ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant	REV__ARID1B|p.P722Hfs*10|1|0.36|ENSG00000049618|chr6:157084826-157084826|C/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	517.2933349609375	2	517.794412	1033.57427	0.15657	8.107E-05	-0.043281	-2.2411E-05	0.11329	5.8659E-05	517.7946119737716	31.055	0.31308	30.794	30.604	30.917	-0.26071					7	5	2	0	0	0	0.30703	1	11372	11372		18.135	13.806	1	4199600	+		39121	9984	25048	25173	37664	37664					0.05882697187735175
YLQVQKLDI	9	Unmodified	_YLQVQKLDI_					0	0	0		ENSG00000112499|ENST00000366953|SLC22A2	ENSG00000112499|ENST00000366953|SLC22A2	ENSG00000112499|ENST00000366953|SLC22A2	MULTI-MSMS	HCT116MG_D190212_S2	2	560.3243408203125	2	560.324057	1118.63356	0.48014	0.00026903	0.29803	0.00016699	0.77817	0.00043603	560.3241870573697	57.152	0.20755	56.973	56.844	57.051	-0.17904					10	3	4	0	0	0	0.1754	1	22084	22084		43.858	3.9086	1	107240000			39122	2348	25049	25174	37665	37665					0.07898871682914432
YLQVQKLDI	9	Unmodified	_YLQVQKLDI_					0	0	0		ENSG00000112499|ENST00000366953|SLC22A2	ENSG00000112499|ENST00000366953|SLC22A2	ENSG00000112499|ENST00000366953|SLC22A2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	560.324057	1118.63356	0.57882	0.00032432	-0.032676	-1.8309E-05	0.54614	0.00030602	560.324430891815	57.265	0.15666	56.986	56.885	57.042	-0.27913	0.0066684	-0.00033023	NaN	43.858	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435890			39123	2348	25049	25174							0.07898871682914432
YLQWRRFVFF	10	Unmodified	_YLQWRRFVFF_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MSMS	HCT116MG_D190212_S1	1	487.9313049316406	3	487.931185	1460.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.799	1	10.799	10.299	11.299	0								0	0	0	0.97116	1	3342	3342		0	0	1				39124	4460	25050	25175	37666	37666					0.05977039721983601
YLRDFLRYWRI	11	Unmodified	_YLRDFLRYWRI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MSMS	HCT116MG_D190212_S2	2	800.9415893554688	2	800.940985	1599.86742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.202	1	37.099	36.599	37.599	-0.10318								0	0	0	0.95925	1	13937	13937		1.4819	0.28856	1				39125	1719	25051	25176	37667	37667					0.09147767842273424
YLRILHTGP	9	Unmodified	_YLRILHTGP_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-MSMS	HCT116MG_D190212_S2	2	535.3115234375	2	535.311284	1068.60801	0.80632	0.00043163	0.0077801	4.1647E-06	0.8141	0.0004358	535.3110498001427	33.443	0.20404	33.25	33.123	33.327	-0.19297					5	3	2	0	0	0	0.57626	1	12440	12440		12.532	0.29089	1	26875000	+		39126	13826	25052	25177	37668	37668					0.07645441951149223
YLRLKRKQKV	10	Unmodified	_YLRLKRKQKV_					0	0	0			REV__SMARCD3|p.M151V|1|0.28|ENSG00000082014|chr7:151242726-151242726|T/C|missense_variant	REV__SMARCD3|p.M151V|1|0.28|ENSG00000082014|chr7:151242726-151242726|T/C|missense_variant	MSMS	HCT116MG_D190212_S2	2	666.4343872070312	2	666.435338	1330.85612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.178	1	60.024	59.524	60.524	-0.15441								0	0	0	0.96937	1	23285	23285		0.40072	0	1		+		39127	17530	25053	25178	37669	37669					0.20392990538766753
YLRPITEAP	9	Unmodified	_YLRPITEAP_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MSMS	HCT116MG_D190212_S2	2	530.2954711914062	2	530.295299	1058.57605	0.51461	0.00027289	-0.14192	-7.5258E-05	0.37269	0.00019764	530.2951355819534	29.299	0.66601	28.983	28.504	29.17	-0.31613					37	12	4	0	0	0	0.14972	1	10615	10615		48.346	3.9388	1	232290000			39128	3463	25054	25179	37670	37670					0.04910029477309763
YLRPITEAP	9	Unmodified	_YLRPITEAP_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MSMS	HCT116MG_D190212_S4	4	530.7972412109375	2	530.295299	1058.57605	0.42697	0.00022642	-0.018067	-9.581E-06	0.4089	0.00021684	530.2951424032887	29.488	0.67544	29.139	28.669	29.345	-0.34921					26	12	3	0	0	0	0.084109	2	10575	10575;10580		61.357	29.052	1	15696000			39129	3463	25054	25179	37671;37672	37671					0.04910029477309763
YLRPITEAP	9	Unmodified	_YLRPITEAP_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.F1650Yfs*12|1|0.38|ENSG00000137145|chr9:19358095-19358096|TT/-|frameshift_variant;DENND4C|p.R1677Dfs*12|1|0.24|ENSG00000137145|chr9:19360255-19360255|A/-|frameshift_variant	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	530.295299	1058.57605	0.5645	0.00029935	-0.063969	-3.3922E-05	0.50053	0.00026543	530.2951290527749	28.839	0.63016	28.839	28.482	29.112	0	-0.17203	4.7941E-05	NaN	61.357	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31006000			39130	3463	25054	25179							0.04910029477309763
YLSQLLIKI	9	Unmodified	_YLSQLLIKI_					0	0	0			REV__ENST00000461741.1_1_7:48075147-48081223:+|nuORF	REV__ENST00000461741.1_1_7:48075147-48081223:+|nuORF	MSMS	HCT116MG_D190212_S1	1	364.24346923828125	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.846	1	47.846	47.346	48.346	0								0	0	0	0.76995	1	18190	18190		1.0715	0	1		+		39131	15787	25055	25180	37673	37673					0.13852936584999043
YLSQLLIKI	9	Unmodified	_YLSQLLIKI_					0	0	0			REV__ENST00000461741.1_1_7:48075147-48081223:+|nuORF	REV__ENST00000461741.1_1_7:48075147-48081223:+|nuORF	MSMS	HCT116MG_D190212_S4	4	364.2330017089844	3	364.23387	1089.67978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.364	1	47.997	47.497	48.497	-0.36728								0	0	0	0.76995	1	17910	17910		1.0715	0	1		+		39132	15787	25055	25180	37674	37674					0.13852936584999043
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	HCT116MG_D190212_S3	3	509.7462463378906	2	509.745639	1017.47673	0.34298	0.00017483	-0.05073	-2.5859E-05	0.29225	0.00014897	509.7456125559496	28.565	0.20833	28.359	28.229	28.437	-0.20593					6	3	2	0	0	0	0.013464	1	10354	10354		104.8	62.705	1	4659400			39133	2850	25056	25181	37675	37675					-0.03131413207427158
YLTLGSDDP	9	Unmodified	_YLTLGSDDP_					0	0	0			REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MSMS	HCT116MG_D190212_S1	1	490.7327880859375	2	490.732197	979.449842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.023	1	28.023	27.523	28.523	0								0	0	0	0.76818	1	10193	10193		7.2892	0	1		+		39134	14425	25057	25182	37676	37676					-0.04070521818607631
YLTMKVVLL	9	Unmodified	_YLTMKVVLL_					0	0	0		nc|ENSG00000102804|Q15714-4|TSC22D1;ENST00000261489.6_2_13:45008100-45008229:-|nuORF	nc|ENSG00000102804|Q15714-4|TSC22D1	nc|ENSG00000102804|Q15714-4|TSC22D1	MULTI-MSMS	HCT116MG_D190212_S3	3	540.3304443359375	2	540.330296	1078.64604	0.44618	0.00024108	0.031651	1.7102E-05	0.47783	0.00025819	540.3302034243325	48.129	2.4884	47.813	46.957	49.445	-0.31596					112	48	4	0	0	0	0.63193	1	18068	18068		9.3474	0	1	44972000			39135	9407	25058	25183	37677	37677					0.10986191821598368
YLTNEGIQYL	10	Unmodified	_YLTNEGIQYL_					0	0	0		ENST00000480942.1_1_6:34392413-34392935:-|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|466|19.44|0.0|20.89|-|ENST00000494077|RPS10-NUDT3,RPS10;ENST00000440748.1_1_7:37415149-37415623:+|nuORF;ENSG00000124614|ENST00000648437|RPS10	ENST00000480942.1_1_6:34392413-34392935:-|nuORF	ENST00000480942.1_1_6:34392413-34392935:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	607.8107299804688	2	607.308603	1212.60265	0.75404	0.00045794	-0.16372	-9.9427E-05	0.59032	0.00035851	607.8097571316723	52.508	0.36174	52.321	52.193	52.555	-0.18725					12	6	3	0	0	0	0.17848	1	20197	20197		61.357	9.7277	1	29351000			39136	457	25059	25184	37678	37678					0.004856735780094823
YLTVENKSL	9	Unmodified	_YLTVENKSL_					0	0	0		nc|ENSG00000186007|Q68G75-3|LEMD1;ENSG00000186007|ENST00000367153|LEMD1	nc|ENSG00000186007|Q68G75-3|LEMD1	nc|ENSG00000186007|Q68G75-3|LEMD1	MSMS	HCT116MG_D190212_S2	2	533.7936401367188	2	533.792589	1065.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.367	1	45.275	44.775	45.775	-0.092472								0	0	0	0.53872	1	17251	17251		26.884	0	1				39137	5864	25060	25185	37679	37679					0.04046305894848956
YLVLPEPITVE	11	Unmodified	_YLVLPEPITVE_					0	0	0		ENST00000442250.5_1_2:173338809-173338884:+|nuORF	ENST00000442250.5_1_2:173338809-173338884:+|nuORF	ENST00000442250.5_1_2:173338809-173338884:+|nuORF	MSMS	HCT116MG_D190212_S1	1	636.8584594726562	2	636.857929	1271.70131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.955	1	10.955	10.455	11.455	0								0	0	0	0.96208	1	3405	3405		0	0	1				39138	7927	25061	25186	37680	37680					0.07632276823005668
YLVPRGGA	8	Unmodified	_YLVPRGGA_					0	0	0			REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	MULTI-MSMS	HCT116MG_D190212_S3	3	417.23931884765625	2	416.73742	831.460287	0.029476	1.2284E-05	0.33354	0.000139	0.36301	0.00015128	416.7375741189191	48.101	0.31306	47.785	47.671	47.984	-0.31596					9	5	2	0	0	0	0.5791	1	18100	18100		34.187	0	1	7007300	+		39139	13969	25062	25187	37681	37681					0.03781550417147628
YLVPRGGA	8	Unmodified	_YLVPRGGA_					0	0	0			REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	416.73742	831.460287	0.31949	0.00013314	0.2811	0.00011715	0.6006	0.00025029	416.7374284555929	47.78	0.25815	47.647	47.532	47.79	-0.13281	-0.069195	-1.9944E-05	NaN	34.187	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18020000	+		39140	13969	25062	25187							0.03781550417147628
YLVPRGGA	8	Unmodified	_YLVPRGGA_					0	0	0			REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	416.73742	831.460287	0.029476	1.2284E-05	0.33354	0.000139	0.36301	0.00015128	416.7375741189191	48.101	0.31306	47.785	47.671	47.984	-0.31596	0.069195	2.3756E-05	NaN	34.187	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7007300	+		39141	13969	25062	25187							0.03781550417147628
YLVVHKIDC	9	Unmodified	_YLVVHKIDC_					0	0	0			REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant	REV__AIP|p.L115Wfs*41|1|0.41|ENSG00000110711|chr11:67489326-67489326|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	363.8641662597656	3	363.86356	1088.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.6904	1	4.6904	4.1904	5.1904	0								0	0	0	0.7701	1	1407	1407		0.23584	0	1		+		39142	9900	25063	25188	37682	37682					0.0281097360525564
YLYAVGNK	8	Unmodified	_YLYAVGNK_					0	0	0			REV__ENSG00000109758|ENST00000382774|HGFAC	REV__ENSG00000109758|ENST00000382774|HGFAC	MSMS	HCT116MG_D190212_S3	3	464.2507019042969	2	464.25036	926.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.173	1	37.871	37.371	38.371	-0.30137								0	0	0	0.68119	1	14131	14131		32.117	1.8922	1		+	+	39143	11380	25064	25189	37683	37683					0.01998399868762135
YLYAVGNK	8	Unmodified	_YLYAVGNK_					0	0	0			REV__ENSG00000109758|ENST00000382774|HGFAC	REV__ENSG00000109758|ENST00000382774|HGFAC	MULTI-MSMS	HCT116MG_D190212_S4	4	464.2507629394531	2	464.25036	926.486168	-0.22864	-0.00010615	0.56979	0.00026453	0.34115	0.00015838	464.25044483713964	38.266	0.64936	37.883	37.633	38.283	-0.38282					21	14	3	0	0	0	0.5791	1	14005	14005		34.187	2.0704	1	13016000	+	+	39144	11380	25064	25189	37684	37684					0.01998399868762135
YLYESGETEKL	11	Unmodified	_YLYESGETEKL_					0	0	0		RMDN1|p.N157Kfs*2|1|0.46|ENSG00000176623|chr8:86486508-86486509|-/T|frameshift_variant;nc|ENSG00000176623|Q96DB5-3|RMDN1;nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1	RMDN1|p.N157Kfs*2|1|0.46|ENSG00000176623|chr8:86486508-86486509|-/T|frameshift_variant	RMDN1|p.N157Kfs*2|1|0.46|ENSG00000176623|chr8:86486508-86486509|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	666.2152709960938	2	666.321908	1330.62926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.023	1	37.93	37.43	38.43	-0.09301								0	0	0	0.93456	1	14272	14272		14.405	9.1085	1				39145	5427	25065	25190	37685	37685					-0.022826823213335956
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	HCT116MG_D190212_S2	2	577.3160400390625	2	577.316232	1152.61791	0.37416	0.00021601	0.050181	2.897E-05	0.42434	0.00024498	577.3162714878171	52.897	0.36018	52.708	52.449	52.809	-0.18922					13	6	3	0	0	0	0.090581	1	20337	20337		60.074	14.374	1	24087000			39146	3137	25066	25191	37686	37686					0.047705851658292886
YLYRHKYENYR	11	Unmodified	_YLYRHKYENYR_					0	0	0		nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644;ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	nc|ENSG00000122482|Q9H582-2|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	MSMS	HCT116MG_D190212_S2	2	802.900634765625	2	802.902057	1603.78956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.187	1	43.114	42.614	43.614	-0.073376								0	0	0	0.95954	1	16368	16368		1.3295	1.0225	1				39147	2764	25067	25192	37687	37687					0.011817101862106938
YLYVLKKLE	9	Unmodified	_YLYVLKKLE_					0	0	0			REV__AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	REV__AP2B1|p.N760Ifs*17|1|0.37|ENSG00000006125|chr17:35674314-35674314|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	390.2386474609375	3	390.237392	1167.69035	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.238	1	46.137	45.637	46.637	-0.1014								0	0	0	0.7696	1	17607	17607		1.1933	0	1		+		39148	9956	25068	25193	37688	37688					0.11320919239415161
YMASQPKNK	9	Unmodified	_YMASQPKNK_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MSMS	HCT116MG_D190212_S2	2	533.771484375	2	533.771134	1065.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.528	1	15.201	14.701	15.701	-0.32684								0	0	0	0.41664	1	5166	5166		32.786	20.254	1				39149	2493	25069	25194	37689	37689					-0.002427874342401992
YMIAHITGL	9	Unmodified	_YMIAHITGL_					0	0	0		ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS;TYMS|p.T234A|1|0.36|ENSG00000176890|chr18:670835-670835|A/G|missense_variant	ENST00000581920.1_1_18:667730-672994:+|nuORF	ENST00000581920.1_1_18:667730-672994:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	509.7731628417969	2	509.773145	1017.53174	0.3753	0.00019132	-0.047164	-2.4043E-05	0.32814	0.00016727	509.7731640448995	50.39	0.47093	50.218	50.036	50.507	-0.1719					13	8	2	0	0	0	0.0034497	1	19312	19312		161.89	104.42	1	86049000			39150	5437	25070	25195	37690	37690					0.023673020594856098
YMIISREM	8	Unmodified	_YMIISREM_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	HCT116MG_D190212_S4	4	521.2190551757812	2	521.756638	1041.49872	0.2422	0.00012637	-0.085852	-4.4794E-05	0.15634	8.1574E-05	521.7569701369281	26.404	0.31207	26.104	25.922	26.234	-0.30087					8	5	2	0	0	0	0.31855	1	9363	9363		8.5933	3.2964	1	1561200			39151	1474	25071	25196	37691	37691					-0.020366480548773325
YMKKKMVEIH	10	Unmodified	_YMKKKMVEIH_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MSMS	HCT116MG_D190212_S4	4	436.238525390625	3	436.238521	1305.69373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.6204	1	1.3559	0.85585	1.8559	-0.26456								0	0	0	0.97116	1	492	492		0	0	1		+		39152	10379	25072	25197	37692	37692					0.05311522750139375
YMLWVTESE	9	Unmodified	_YMLWVTESE_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	HCT116MG_D190212_S2	2	579.2932739257812	2	579.262807	1156.51106	0.29954	0.00017352	0.14418	8.3515E-05	0.44372	0.00025703	579.2628920572943	12.041	0.16406	11.751	11.656	11.82	-0.28953					9	5	2	0	0	0	0.26734	1	3895	3895		4.3292	0.38484	1	452420			39153	6164	25073	25198	37693	37693					-0.060933331108344646
YMNNDLIGL	9	Unmodified	_YMNNDLIGL_					0	0	0		ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	MULTI-SECPEP	HCT116MG_D190212_S2	2	526.3173217773438	2	526.757692	1051.50083	0.3988	0.00021007	0.015667	8.2529E-06	0.41447	0.00021832	526.7576236132355	55.131	0.2028	54.943	54.816	55.019	-0.18797					6	3	2	0	0	0	0.032618	1	21242	21242		85.272	17.191	1	16208000			39154	989	25074	25199	37694	37694					-0.022858960454186672
YMNNDLIGL	9	Unmodified	_YMNNDLIGL_					0	0	0		ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	MULTI-SECPEP	HCT116MG_D190212_S2	2	1052.508544921875	1	1052.50811	1051.50083	0.63306	0.0006663	-0.51189	-0.00053876	0.12118	0.00012754	1052.5079131537836	55.131	0.30453	54.943	54.816	55.121	-0.18797					9	5	3	0	0	0	0.18552	1	21276	21276		37.974	24.068	1	36952000			39155	989	25074	25199	37695	37695					-0.022858960454186672
YMSGYHTGY	9	Unmodified	_YMSGYHTGY_					0	0	0		ENST00000509805.5_1_5:69363243-69366626:+|nuORF;ENST00000518504.5_1_5:70238322-70242051:+|nuORF;nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	MSMS	HCT116MG_D190212_S2	2	539.7185668945312	2	539.718567	1077.42258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.337	1	29.03	28.53	29.53	-0.30704								0	0	0	0.3894	1	10742	10742		34.102	19.521	1				39156	5234	25075	25200	37696	37696					-0.11303328630629039
YNCCCGNF	8	Unmodified	_YNCCCGNF_					0	0	0		ENSG00000186980|ENST00000334160|KRTAP23-1	ENSG00000186980|ENST00000334160|KRTAP23-1	ENSG00000186980|ENST00000334160|KRTAP23-1	MSMS	HCT116MG_D190212_S2	2	462.1466979980469	2	462.145866	922.277179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.787	1	57.612	57.112	58.112	-0.17494								0	0	0	0.8837	1	22319	22319		0.79363	0	1				39157	5922	25076	25201	37697	37697					-0.18706831022836923
YNCCCGNF	8	Unmodified	_YNCCCGNF_					0	0	0		ENSG00000186980|ENST00000334160|KRTAP23-1	ENSG00000186980|ENST00000334160|KRTAP23-1	ENSG00000186980|ENST00000334160|KRTAP23-1	MSMS	HCT116MG_D190212_S3	3	462.1466064453125	2	462.145866	922.277179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.199	1	46.885	46.385	47.385	-0.31416								0	0	0	0.8837	1	17718	17718		0.79363	0	1				39158	5922	25076	25201	37698	37698					-0.18706831022836923
YNCCCGNF	8	Unmodified	_YNCCCGNF_					0	0	0		ENSG00000186980|ENST00000334160|KRTAP23-1	ENSG00000186980|ENST00000334160|KRTAP23-1	ENSG00000186980|ENST00000334160|KRTAP23-1	MSMS	HCT116MG_D190212_S3	3	462.1466979980469	2	462.145866	922.277179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.469	1	53.166	52.666	53.666	-0.30305								0	0	0	0.8837	1	20238	20238		0.79363	0	1				39159	5922	25076	25201	37699	37699					-0.18706831022836923
YNEMDPDERW	10	Unmodified	_YNEMDPDERW_					0	0	0		ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;CACNA1A|p.P2221Rfs*45|1|0.48|ENSG00000141837|chr19:13208879-13208879|A/-|frameshift_variant;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-5|CACNA1A;CACNA1A|p.Q1743Pfs*29|1|0.24|ENSG00000141837|chr19:13234944-13234945|-/A|frameshift_variant;CACNA1A|p.G1015Afs*53|1|0.11|ENSG00000141837|chr19:13298586-13298589|TCCC/-|frameshift_variant;CACNA1A|p.D997Tfs*72|1|0.22|ENSG00000141837|chr19:13298645-13298645|G/-|frameshift_variant;CACNA1A|p.T1355Pfs*16|1|0.3|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;CACNA1A|p.L1178Pfs*38|1|0.25|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant;CACNA1A|p.E1198Rfs*18|1|0.33|ENSG00000141837|chr19:13285168-13285169|-/T|frameshift_variant;CACNA1A|p.K1138Rfs*48|1|0.23|ENSG00000141837|chr19:13286645-13286645|G/-|frameshift_variant;CACNA1A|p.L1178Sfs*8|3|0.15|ENSG00000141837|chr19:13286524-13286524|G/-|frameshift_variant;CACNA1A|p.D1016Tfs*53|1|0.16|ENSG00000141837|chr19:13298587-13298587|C/-|frameshift_variant;CACNA1A|p.N1375Tfs*54|1|0.21|ENSG00000141837|chr19:13261576-13261576|T/-|frameshift_variant	ENSG00000141837|ENST00000360228|CACNA1A	ENSG00000141837|ENST00000360228|CACNA1A	MULTI-MSMS	HCT116MG_D190212_S2	2	678.7177734375	2	677.772059	1353.52957	0.54578	0.00036991	-1.9552	-0.0013252	-1.4094	-0.00095527	677.7705369357576	44.675	0.2095	44.59	44.482	44.691	-0.084797					6	3	2	0	0	0	0.87801	1	16957	16957		3.9444	0	1	12186000			39160	3735	25077	25202	37700	37700					-0.13305823206951573
YNEPIEEMAPL	11	Unmodified	_YNEPIEEMAPL_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MSMS	HCT116MG_D190212_S3	3	652.9815063476562	2	653.305203	1304.59585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.564	1	38.262	37.762	38.762	-0.30137								0	0	0	0.95273	1	14290	14290		4.897	0.141	1		+		39161	13992	25078	25203	37701	37701					-0.0442600736487293
YNERQKDTKVD	11	Unmodified	_YNERQKDTKVD_					0	0	0			REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF	REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	466.2352294921875	3	465.900279	1394.67901	0.10367	4.83E-05	1.5386	0.00071683	1.6423	0.00076513	466.23541218359253	19.626	0.15664	19.626	19.548	19.704	0					4	2	2	0	0	0	0.71776	1	6842	6842		8.7518	4.6352	1	4617400	+		39162	16039	25079	25204	37702	37702					-0.0025455459269778657
YNILHEEDRKD	11	Unmodified	_YNILHEEDRKD_					0	0	0		ENST00000497292.1_1_20:46255748-46257319:+|nuORF;NCOA3|p.S287Ifs*8|1|0.19|ENSG00000124151|chr20:47633529-47633530|-/A|frameshift_variant;NCOA3|p.P467Hfs*15|1|0.2|ENSG00000124151|chr20:47635604-47635604|C/-|frameshift_variant;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3	ENST00000497292.1_1_20:46255748-46257319:+|nuORF	ENST00000497292.1_1_20:46255748-46257319:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	716.8470458984375	2	716.34678	1430.67901	0.75869	0.00054349	-2.959	-0.0021197	-2.2003	-0.0015762	716.845772057822	50.03	0.25544	49.866	49.737	49.993	-0.16369					6	4	2	0	0	0	0.69464	1	19201	19201		23.79	6.3471	1	31038000			39163	8399	25080	25205	37703	37703					-0.01910554592700464
YNILRVLIWFI	11	Unmodified	_YNILRVLIWFI_					0	0	0		nc|ENSG00000170820|P23945-2|FSHR;FSHR|p.T555Wfs*89|1|0.07|ENSG00000170820|chr2:48963159-48963160|-/TCCAA|frameshift_variant;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	nc|ENSG00000170820|P23945-2|FSHR	nc|ENSG00000170820|P23945-2|FSHR	MSMS	HCT116MG_D190212_S1	1	725.4357299804688	2	725.434473	1448.85439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.047	1	54.047	53.547	54.547	0								0	0	0	0.95636	1	20715	20715		2.9952	0.26005	1				39164	5158	25081	25206	37704	37704					0.14791936730171074
YNIMVPFGP	9	Unmodified	_YNIMVPFGP_					0	0	0		nc|ENSG00000105176|O94763-4|URI1;nc|ENSG00000105176|O94763-3|URI1;ENSG00000105176|ENST00000392271|URI1;URI1|p.V134*|1|0.24|ENSG00000105176|chr19:30005386-30005386|A/-|frameshift_variant	nc|ENSG00000105176|O94763-4|URI1	nc|ENSG00000105176|O94763-4|URI1	MULTI-MSMS	HCT116MG_D190212_S1	1	519.2598876953125	2	519.259871	1036.50519	0.54388	0.00028241	-0.3902	-0.00020261	0.15368	7.9801E-05	519.2596397087312	20.808	0.42319	20.808	20.644	21.067	0					11	7	3	0	0	0	0.64512	1	7323	7323		8.5933	2.8329	1	10563000			39165	1985	25082	25207	37705	37705					-0.011603868318161403
YNIYKKYWPRR	11	Unmodified	_YNIYKKYWPRR_					0	0	0		ENST00000347053.7_1_7:107002482-107002769:-|nuORF	ENST00000347053.7_1_7:107002482-107002769:-|nuORF	ENST00000347053.7_1_7:107002482-107002769:-|nuORF	MSMS	HCT116MG_D190212_S4	4	793.9332275390625	2	793.93316	1585.85177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.235	1	46.865	46.365	47.365	-0.37038								0	0	0	0.96157	1	17466	17466		0.26902	0	1				39166	7266	25083	25208	37706	37706					0.08227481325184272
YNKEFNWWYDY	11	Unmodified	_YNKEFNWWYDY_					0	0	0		tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	tr|U7SJR1|U7SJR1_FUSNUAlpha-2-macroglobulindomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_02061PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	814.3491821289062	2	814.346249	1626.67794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.791	1	16.624	16.124	17.124	-0.16664								0	0	0	0.96194	1	5523	5523		0.26902	0.26902	1				39167	18321	25084	25209	37707	37707					-0.11032768961581496
YNKPKLSEP	9	Unmodified	_YNKPKLSEP_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-SECPEP	HCT116MG_D190212_S2	2	537.8059692382812	2	538.292756	1074.57096	0.44104	0.00023741	0.4981	0.00026813	0.93914	0.00050553	538.2926832801155	28.974	0.30764	28.658	28.504	28.812	-0.31613					12	5	3	0	0	0	0.21227	1	10650	10650		28.487	0.85804	1	14873000			39168	5318	25085	25210	37708	37708					0.036657256147236694
YNLSIFIKLV	10	Unmodified	_YNLSIFIKLV_					0	0	0		ENST00000544547.5_1_2:109300823-109300958:+|nuORF	ENST00000544547.5_1_2:109300823-109300958:+|nuORF	ENST00000544547.5_1_2:109300823-109300958:+|nuORF	MSMS	HCT116MG_D190212_S1	1	403.9126892089844	3	403.912908	1208.7169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.516	1	10.516	10.016	11.016	0								0	0	0	0.97116	1	3233	3233		0	0	1				39169	8708	25086	25211	37709	37709					0.12088608130716239
YNPRLSEGTKY	11	Unmodified	_YNPRLSEGTKY_					0	0	0			REV__ENSG00000120068|ENST00000239144|HOXB8	REV__ENSG00000120068|ENST00000239144|HOXB8	MULTI-MSMS	HCT116MG_D190212_S2	2	664.336181640625	2	664.335684	1326.65681	0.64995	0.00043179	0.23582	0.00015667	0.88578	0.00058845	664.3359472098342	31.629	0.26	31.38	31.25	31.51	-0.24883					7	4	2	0	0	0	0.71887	1	11705	11705		18.373	6.1324	1	26485000	+		39170	11685	25087	25212	37710	37710					0.006552657295742392
YNRKKVKYRKD	11	Unmodified	_YNRKKVKYRKD_					0	0	0		CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1;CAMTA1|p.K1259Ifs*22|1|0.18|ENSG00000171735|chr1:7738075-7738076|-/TACAACT|frameshift_variant;CAMTA2|p.P270Qfs*6|1|0.43|ENSG00000108509|chr17:4980513-4980513|G/-|frameshift_variant;CAMTA2|p.S432Qfs*49|1|0.13|ENSG00000108509|chr17:4980022-4980028|CTACTGA/-|frameshift_variant;CAMTA2|p.P466Lfs*17|1|0.21|ENSG00000108509|chr17:4979925-4979925|G/-|frameshift_variant;CAMTA2|p.P866Lfs*9|3|0.42|ENSG00000108509|chr17:4972443-4972443|G/-|frameshift_variant;nc|ENSG00000108509|O94983-6|CAMTA2;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant;nc|ENSG00000108509|O94983-6|CAMTA2	CAMTA1|p.K1589Nfs*33|1|0.15|ENSG00000171735|chr1:7751269-7751269|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	499.9599304199219	3	499.959803	1496.85758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.78099	1	0.77473	0.27473	1.2747	-0.00626								0	0	0	0.9619	1	264	264		0.094841	0	1				39171	319;9419	25088	25213	37711	37711					0.12902579836872974
YNRTASSSDS	10	Unmodified	_YNRTASSSDS_					0	0	0		ENST00000546063.5_1_19:10672436-10676629:-|nuORF;ENST00000478863.5_1_19:10666000-10676642:-|nuORF;ENSG00000129347|ENST00000312962|KRI1	ENST00000546063.5_1_19:10672436-10676629:-|nuORF	ENST00000546063.5_1_19:10672436-10676629:-|nuORF	MSMS	HCT116MG_D190212_S3	3	544.2361450195312	2	544.236167	1086.45778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.06	1	12.115	11.615	12.615	0.055045								0	0	0	0.97116	1	3735	3735		0	0	1				39172	3030	25089	25214	37712	37712					-0.08198994569147544
YNWTEEYGRFD	11	Unmodified	_YNWTEEYGRFD_					0	0	0		ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	MULTI-MSMS	HCT116MG_D190212_S2	2	493.87799072265625	3	493.877363	1478.61026	0.18237	9.0068E-05	1.2955	0.00063983	1.4779	0.0007299	493.8780799682634	10.864	0.24392	10.59	10.414	10.658	-0.27365					14	8	3	0	0	0	0.74191	1	3468	3468		1.1098	0.6038	1	471440			39173	1235	25090	25215	37713	37713					-0.10990218892402481
YPDPLLAN	8	Unmodified	_YPDPLLAN_					0	0	0			REV__ENSG00000145391|ENST00000274031|SETD7	REV__ENSG00000145391|ENST00000274031|SETD7	MSMS	HCT116MG_D190212_S1	1	451.70892333984375	2	451.734543	901.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.292	1	19.292	18.792	19.792	0								0	0	0	0.68119	1	6682	6682		32.117	4.4882	1		+		39174	12450	25091	25216	37714	37714					-0.0001359288519324764
YPDRFVVKAL	10	Unmodified	_YPDRFVVKAL_					0	0	0			REV__ENSG00000161016|ENST00000528957|RPL8	REV__ENSG00000161016|ENST00000528957|RPL8	MSMS	HCT116MG_D190212_S2	2	403.23272705078125	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2968	1	1.2905	0.79053	1.7905	-0.0062599								0	0	0	0.97116	1	424	424		0	0	1		+		39175	12850	25092	25217	37715	37715					0.08102266811147274
YPDRFVVKAL	10	Unmodified	_YPDRFVVKAL_					0	0	0			REV__ENSG00000161016|ENST00000528957|RPL8	REV__ENSG00000161016|ENST00000528957|RPL8	MSMS	HCT116MG_D190212_S2	2	403.23260498046875	3	403.232641	1206.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.152	1	10.87	10.37	11.37	-0.28186								0	0	0	0.97116	1	3578	3578		0	0	1		+		39176	12850	25092	25217	37716	37716					0.08102266811147274
YPFKKVSYL	9	Unmodified	_YPFKKVSYL_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MSMS	HCT116MG_D190212_S4	4	382.219482421875	3	382.21822	1143.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.169	1	46.799	46.299	47.299	-0.37038								0	0	0	0.76973	1	17439	17439		2.4985	1.5362	1				39177	4520	25093	25218	37717	37717					0.06676077033876027
YPFKKVSYL	9	Unmodified	_YPFKKVSYL_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MSMS	HCT116MG_D190212_S4	4	382.2201843261719	3	382.21822	1143.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.935	1	47.566	47.066	48.066	-0.36907								0	0	0	0.76973	1	17736	17736		2.4985	0.75621	1				39178	4520	25093	25218	37718	37718					0.06676077033876027
YPKTLILGY	9	Unmodified	_YPKTLILGY_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MSMS	HCT116MG_D190212_S3	3	534.3118896484375	2	534.310418	1066.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.589	1	36.288	35.788	36.788	-0.30113								0	0	0	0.76669	1	13524	13524		12.532	1.7076	1		+		39179	13504	25094	25219	37719	37719					0.07564388142509415
YPLPLPLL	8	Unmodified	_YPLPLPLL_					0	0	0		ENST00000593959.1_1_19:46357460-46357553:-|nuORF	ENST00000593959.1_1_19:46357460-46357553:-|nuORF	ENST00000593959.1_1_19:46357460-46357553:-|nuORF	MSMS	HCT116MG_D190212_S3	3	463.2914733886719	2	463.291497	924.568441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.427	1	56.143	55.643	56.643	-0.28367								0	0	0	0.8837	1	21421	21421		0.79363	0	1				39180	9053	25095	25220	37720	37720					0.10313921947715698
YPMQPILLSI	10	Unmodified	_YPMQPILLSI_					0	0	0			REV__UNC5A|p.P467Qfs*22|1|0.37|ENSG00000113763|chr5:176877208-176877208|C/-|frameshift_variant	REV__UNC5A|p.P467Qfs*22|1|0.37|ENSG00000113763|chr5:176877208-176877208|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	392.2213439941406	3	392.222866	1173.64677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.237	1	40.164	39.664	40.664	-0.072838								0	0	0	0.93938	1	15168	15168		7.1017	0.47135	1		+		39181	18042	25096	25221	37721	37721					0.06688986470635427
YPMVAQDRPM	10	Unmodified	_YPMVAQDRPM_					0	0	0			REV__ENSG00000260456|ENST00000567970|C16orf95	REV__ENSG00000260456|ENST00000567970|C16orf95	MULTI-MSMS	HCT116MG_D190212_S4	4	403.19268798828125	3	403.19146	1206.55255	0.028022	1.1298E-05	2.2912	0.00092378	2.3192	0.00093508	403.1926257944575	26.528	0.25992	26.227	26.13	26.389	-0.30087					5	4	2	0	0	0	0.80458	1	9486	9486		10.151	6.0339	1	1616800	+		39182	14416	25097	25222	37722	37722					-0.04246475623176593
YPQGVAAW	8	Unmodified	_YPQGVAAW_					0	0	0		nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	MSMS	HCT116MG_D190212_S4	4	446.22296142578125	2	446.221603	890.428653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.222	1	26.911	26.411	27.411	-0.3114								0	0	0	0.8837	1	9735	9735		5.7604	0.52976	1				39183	6026	25098	25223	37723	37723					-0.02094442336829161
YPSCSCAHTY	10	Unmodified	_YPSCSCAHTY_					0	0	0		ENST00000466398.5_1_2:180409590-180440874:-|nuORF;ENST00000457304.5_1_2:180409590-180501977:-|nuORF;ENST00000463918.1_1_2:180409590-180524871:-|nuORF	ENST00000466398.5_1_2:180409590-180440874:-|nuORF	ENST00000466398.5_1_2:180409590-180440874:-|nuORF	MSMS	HCT116MG_D190212_S3	3	566.2149658203125	2	566.215334	1130.41612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.603	1	34.305	33.805	34.805	-0.29707								0	0	0	0.90475	1	12743	12743		14.838	0	1				39184	8031	25099	25224	37724	37724					-0.14387589853663485
YPSPHHHHHHH	11	Unmodified	_YPSPHHHHHHH_					0	0	0			REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	REV__GATA6|p.K485Rfs*11|1|0.4|ENSG00000141448|chr18:22182778-22182779|AA/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	474.8818664550781	3	474.881887	1421.62383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.739	1	13.814	13.314	14.314	0.074899								0	0	0	0.96208	1	4377	4377		0	0	1		+		39185	12332	25100	25225	37725	37725					-0.07011458759257039
YPYMLLHSYS	10	Unmodified	_YPYMLLHSYS_					0	0	0			REV__CPA1|p.Q310H|1|0.19|ENSG00000091704|chr7:130385288-130385288|G/T|missense_variant	REV__CPA1|p.Q310H|1|0.19|ENSG00000091704|chr7:130385288-130385288|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	637.297607421875	2	637.299724	1272.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.38	1	49.018	48.518	49.518	-0.36213								0	0	0	0.91906	1	18314	18314		11.64	0.14559	1		+		39186	10283	25101	25226	37726	37726					-0.040493649484915295
YQANGICC	8	Unmodified	_YQANGICC_					0	0	0		UNG|p.E105Gfs*38|1|0.41|ENSG00000076248|chr12:109098608-109098609|-/G|frameshift_variant	UNG|p.E105Gfs*38|1|0.41|ENSG00000076248|chr12:109098608-109098609|-/G|frameshift_variant	UNG|p.E105Gfs*38|1|0.41|ENSG00000076248|chr12:109098608-109098609|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	436.17523193359375	2	436.175481	870.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.018	1	63.018	62.518	63.518	0								0	0	0	0.8837	1	24344	24344		0	0	1				39187	18682	25102	25227	37727	37727					-0.10394611737024206
YQANGICC	8	Unmodified	_YQANGICC_					0	0	0		UNG|p.E105Gfs*38|1|0.41|ENSG00000076248|chr12:109098608-109098609|-/G|frameshift_variant	UNG|p.E105Gfs*38|1|0.41|ENSG00000076248|chr12:109098608-109098609|-/G|frameshift_variant	UNG|p.E105Gfs*38|1|0.41|ENSG00000076248|chr12:109098608-109098609|-/G|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	436.1747741699219	2	436.175481	870.336409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.892	1	63.892	63.392	64.392	0								0	0	0	0.8837	1	24674	24674		0	0	1				39188	18682	25102	25227	37728	37728					-0.10394611737024206
YQDPDATSLKY	11	Unmodified	_YQDPDATSLKY_					0	0	0		nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	HCT116MG_D190212_S2	2	650.806396484375	2	650.806425	1299.5983	0.74358	0.00048393	0.39798	0.00025901	1.1416	0.00074294	650.8067574231794	34.325	0.20769	34.15	34.02	34.227	-0.17512					6	3	2	0	0	0	0.42577	1	12785	12785		62.869	20.913	1	26520000			39189	3156	25103	25228	37729	37729					-0.03951835635575662
YQDPDATSLKY	11	Unmodified	_YQDPDATSLKY_					0	0	0		nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MATCH	HCT116MG_D190212_S3	3		2	650.806425	1299.5983	0.49954	0.0003251	-0.0086457	-5.6267E-06	0.49089	0.00031948	651.308105824573	34.535	0.20737	34.238	34.129	34.336	-0.29707	0.044375	-0.00017892	NaN	62.869	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3859900			39190	3156	25103	25228							-0.03951835635575662
YQEDKESNK	9	Unmodified	_YQEDKESNK_					0	0	0		DUSP19|p.G203D|1|0.28|ENSG00000162999|chr2:183095612-183095612|G/A|missense_variant	DUSP19|p.G203D|1|0.28|ENSG00000162999|chr2:183095612-183095612|G/A|missense_variant	DUSP19|p.G203D|1|0.28|ENSG00000162999|chr2:183095612-183095612|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	570.780517578125	2	570.762017	1139.50948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.501	1	28.501	28.001	29.001	0								0	0	0	0.7663	1	10384	10384		13.906	1.3745	1				39191	737	25104	25229	37730	37730					-0.05469250875239595
YQEKEENDSR	10	Unmodified	_YQEKEENDSR_					0	0	0		nc|ENSG00000178226|Q5K4E3-3|PRSS36	nc|ENSG00000178226|Q5K4E3-3|PRSS36	nc|ENSG00000178226|Q5K4E3-3|PRSS36	MULTI-MSMS	HCT116MG_D190212_S1	1	649.2869873046875	2	649.286388	1296.55822	0.75707	0.00049156	-0.11527	-7.484E-05	0.64181	0.00041672	649.2862711602513	20.201	0.2611	20.201	20.018	20.279	0					8	4	3	0	0	0	0.40515	1	7053	7053		41.84	1.8899	1	12389000			39192	9562	25105	25230	37731	37731					-0.07819382306138323
YQEWEREFQLW	11	Unmodified	_YQEWEREFQLW_					0	0	0		YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant;ENSG00000119596|ENST00000325680|YLPM1;YLPM1|p.P816Qfs*13|1|0.4|ENSG00000119596|chr14:74797738-74797738|G/-|frameshift_variant	YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant	YLPM1|p.F1761Lfs*40|1|0.31|ENSG00000119596|chr14:74811671-74811671|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	807.3720703125	2	807.372798	1612.73104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.804	1	29.567	29.067	30.067	-0.23655								0	0	0	0.96141	1	10840	10840		0.35063	0	1				39193	2651	25106	25231	37732	37732					-0.05081391178919148
YQGKIHAKR	9	Unmodified	_YQGKIHAKR_					0	0	0		ENST00000518242.5_1_8:40554620-40625222:-|nuORF;ENST00000519806.1_1_8:40532148-40554851:-|nuORF;nc|ENSG00000165061|Q9H898-2|ZMAT4;ENSG00000165061|ENST00000297737|ZMAT4	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	MSMS	HCT116MG_D190212_S1	1	550.8196411132812	2	550.819807	1099.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.485	1	11.485	10.985	11.985	0								0	0	0	0.77025	1	3619	3619		0	0	1				39194	4745	25107	25232	37733	37733					0.07923362556903157
YQGKIHAKR	9	Unmodified	_YQGKIHAKR_					0	0	0		ENST00000518242.5_1_8:40554620-40625222:-|nuORF;ENST00000519806.1_1_8:40532148-40554851:-|nuORF;nc|ENSG00000165061|Q9H898-2|ZMAT4;ENSG00000165061|ENST00000297737|ZMAT4	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	MSMS	HCT116MG_D190212_S1	1	550.8201293945312	2	550.819807	1099.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.017	1	12.017	11.517	12.517	0								0	0	0	0.77025	1	3832	3832		0	0	1				39195	4745	25107	25232	37734	37734					0.07923362556903157
YQGKIHAKR	9	Unmodified	_YQGKIHAKR_					0	0	0		ENST00000518242.5_1_8:40554620-40625222:-|nuORF;ENST00000519806.1_1_8:40532148-40554851:-|nuORF;nc|ENSG00000165061|Q9H898-2|ZMAT4;ENSG00000165061|ENST00000297737|ZMAT4	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	MSMS	HCT116MG_D190212_S1	1	550.8196411132812	2	550.819807	1099.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.554	1	12.554	12.054	13.054	0								0	0	0	0.77025	1	4036	4036		0	0	1				39196	4745	25107	25232	37735	37735					0.07923362556903157
YQMKDCYTY	9	Carbamidomethyl (C),Oxidation (M)	_YQM(Oxidation (M))KDC(Carbamidomethyl (C))YTY_	YQMKDC(1)YTY	YQM(1)KDCYTY	YQMKDC(44)YTY	YQM(44)KDCYTY	0	1	1			REV__ENSG00000154589|ENST00000284818|LY96	REV__ENSG00000154589|ENST00000284818|LY96	MULTI-MSMS	HCT116MG_D190212_S1	1	644.757080078125	2	644.254656	1286.49476	0.82041	0.00052855	-0.16262	-0.00010477	0.65779	0.00042378	644.2546346802212	33.375	0.3112	33.375	33.244	33.556	0					14	5	4	0	0	0	0.1754	1	12361	12361		43.858	14.018	1	22696000	+		39197	12682	25108	25233	37736	37736	54	157			-0.13702782339237274
YQMKDCYTY	9	Carbamidomethyl (C),Oxidation (M)	_YQM(Oxidation (M))KDC(Carbamidomethyl (C))YTY_					0	1	1			REV__ENSG00000154589|ENST00000284818|LY96	REV__ENSG00000154589|ENST00000284818|LY96	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	644.254656	1286.49476	0.82041	0.00052855	-0.16262	-0.00010477	0.65779	0.00042378	644.2546346802212	33.375	0.3112	33.375	33.244	33.556	0	-0.058145	5.3344E-05	NaN	43.858	14	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22696000	+		39198	12682	25108	25233			54	157			-0.13702782339237274
YQMYDFCCVNM	11	Unmodified	_YQMYDFCCVNM_					0	0	0		DNAH17|p.T386M|1|0.31|ENSG00000187775|chr17:78569415-78569415|G/A|missense_variant	DNAH17|p.T386M|1|0.31|ENSG00000187775|chr17:78569415-78569415|G/A|missense_variant	DNAH17|p.T386M|1|0.31|ENSG00000187775|chr17:78569415-78569415|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	472.84271240234375	3	472.841222	1415.50184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.804	1	12.804	12.304	13.304	0								0	0	0	0.96192	1	4129	4129		0.08335	0.08335	1				39199	703	25109	25234	37737	37737					-0.18929509054692062
YQQPPGQQPP	10	Unmodified	_YQQPPGQQPP_					0	0	0			REV__nc|ENSG00000141380|Q15532-2|SS18	REV__nc|ENSG00000141380|Q15532-2|SS18	MULTI-SECPEP	HCT116MG_D190212_S2	2	569.492431640625	2	570.277638	1138.54072	0.71277	0.00040648	-1.8626	-0.0010622	-1.1499	-0.00065574	570.2759844741981	33.322	0.25958	33.129	32.914	33.174	-0.19297					6	4	2	0	0	0	0.30856	1	12280	12280		6.7232	3.1267	1	15974000	+		39200	12329	25110	25235	37738	37738					-0.023006330504586003
YQRRYRERRDS	11	Unmodified	_YQRRYRERRDS_					0	0	0		nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;nc|ENSG00000179335|P49761-2|CLK3;ENST00000454830.6_1_15:74908152-74912599:+|nuORF;CLK3|p.K288Rfs*48|1|0.05|ENSG00000179335|chr15:74622168-74622169|-/GATTG|frameshift_variant	nc|ENSG00000179335|P49761-3|CLK3	nc|ENSG00000179335|P49761-3|CLK3	MSMS	HCT116MG_D190212_S2	2	792.6887817382812	2	792.908736	1583.80292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.464	1	42.394	41.894	42.894	-0.069984								0	0	0	0.9581	1	16074	16074		2.086	0.75648	1				39201	5550	25111	25236	37739	37739					0.03436961018155671
YQSFQVIWRYF	11	Unmodified	_YQSFQVIWRYF_					0	0	0		ENSG00000197594|ENST00000647893|ENPP1	ENSG00000197594|ENST00000647893|ENPP1	ENSG00000197594|ENST00000647893|ENPP1	MSMS	HCT116MG_D190212_S2	2	512.9620361328125	3	512.925988	1535.75613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.171	1	50.001	49.501	50.501	-0.17011								0	0	0	0.95954	1	19223	19223		1.3296	0	1				39202	6158	25112	25237	37740	37740					0.009687084143251923
YQTQSEEV	8	Unmodified	_YQTQSEEV_					0	0	0		ENSG00000166510|ENST00000591504|CCDC68	ENSG00000166510|ENST00000591504|CCDC68	ENSG00000166510|ENST00000591504|CCDC68	MULTI-MSMS	HCT116MG_D190212_S2	2	492.2197570800781	2	492.219454	982.424355	0.44557	0.00021932	-0.14443	-7.1089E-05	0.30115	0.00014823	492.21932917760677	34.343	0.25974	34.168	34.02	34.279	-0.17511					10	4	3	0	0	0	0.70219	1	12815	12815		22.736	0	1	18080000			39203	4863	25113	25238	37741	37741					-0.06755996341041737
YQVPVLGTPSL	11	Unmodified	_YQVPVLGTPSL_					0	0	0		nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;RBBP6|p.R939Efs*11|1|0.32|ENSG00000122257|chr16:24569501-24569501|A/-|frameshift_variant;RBBP6|p.R1089Qfs*6|1|0.18|ENSG00000122257|chr16:24569949-24569950|-/C|frameshift_variant;RBBP6|p.A1062Pfs*49|2|0.3|ENSG00000122257|chr16:24569868-24569868|A/-|frameshift_variant;RBBP6|p.N1351Mfs*9|1|0.45|ENSG00000122257|chr16:24571113-24571113|A/-|frameshift_variant;RBBP6|p.D1432Vfs*9|1|0.04|ENSG00000122257|chr16:24571360-24571361|-/TTTTCCCTTTTTC|frameshift_variant;RBBP6|p.T1475Lfs*20|1|0.3|ENSG00000122257|chr16:24571483-24571483|A/-|frameshift_variant	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MSMS	HCT116MG_D190212_S3	3	587.7965087890625	2	587.329339	1172.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.865	1	36.564	36.064	37.064	-0.30113								0	0	0	0.94538	1	13636	13636		8.7454	0	1				39204	2756	25114	25239	37742	37742					0.06470854337339915
YRAQPSASL	9	Unmodified	_YRAQPSASL_					0	0	0		RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant;RBM14|p.K594Rfs*15|1|0.67|ENSG00000239306|chr11:66625653-66625653|A/-|frameshift_variant;ENSG00000239306|ENST00000310137|RBM14	RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant	RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	496.7619934082031	2	496.761623	991.508694	0.38269	0.0001901	0.033475	1.6629E-05	0.41616	0.00020673	496.76151752041665	27.785	0.41618	27.785	27.592	28.008	0					13	7	3	0	0	0	0.053544	1	10108	10108		72.968	28.561	1	3861000			39205	6534	25115	25240	37743	37743					0.012599992663695048
YRAQPSASL	9	Unmodified	_YRAQPSASL_					0	0	0		RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant;RBM14|p.K594Rfs*15|1|0.67|ENSG00000239306|chr11:66625653-66625653|A/-|frameshift_variant;ENSG00000239306|ENST00000310137|RBM14	RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant	RBM14|p.A565Gfs*13|1|0.47|ENSG00000239306|chr11:66625564-66625565|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	496.7620849609375	2	496.761623	991.508694	0.37073	0.00018417	0.20396	0.00010132	0.57469	0.00028549	496.7618990759182	28.216	0.41423	27.886	27.719	28.133	-0.32987					10	7	2	0	0	0	0.055677	1	10320	10320		71.922	23.576	1	10243000			39206	6534	25115	25240	37744	37744					0.012599992663695048
YRCPWCDY	8	Unmodified	_YRCPWCDY_					0	0	0		nc|ENSG00000215421|Q9C0G0-2|ZNF407;ZNF407|p.G1946Afs*18|1|0.26|ENSG00000215421|chr18:75063553-75063553|G/-|frameshift_variant;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	nc|ENSG00000215421|Q9C0G0-2|ZNF407	MSMS	HCT116MG_D190212_S2	2	553.1975708007812	2	553.215137	1104.41572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.432	1	13.128	12.628	13.628	-0.30453								0	0	0	0.8837	1	4391	4391		0	0	1				39207	6450	25116	25241	37745	37745					-0.13230964782883348
YRDLRWRFWWE	11	Unmodified	_YRDLRWRFWWE_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MULTI-MSMS	HCT116MG_D190212_S4	4	857.427734375	2	856.925866	1711.83718	0.76166	0.00065268	0.042316	3.6261E-05	0.80397	0.00068895	857.4276941327624	34.187	0.57149	33.802	33.412	33.984	-0.38558					16	10	2	0	0	0	0.74191	1	12505	12505		0	0	1	3245200	+		39208	11868	25117	25242	37746	37746					0.009734091770724262
YRDYSGLLY	9	Unmodified	_YRDYSGLLY_					0	0	0		nc|ENSG00000110811|Q8IVL6-2|P3H3;ENSG00000110811|ENST00000290510|P3H3	nc|ENSG00000110811|Q8IVL6-2|P3H3	nc|ENSG00000110811|Q8IVL6-2|P3H3	MULTI-MSMS	HCT116MG_D190212_S2	2	575.282470703125	2	575.282389	1148.55022	0.43787	0.0002519	-0.43941	-0.00025279	-0.0015481	-8.906E-07	575.2819926920791	57.619	0.20605	57.444	57.315	57.521	-0.17494					5	3	2	0	0	0	0.51829	1	22282	22282		15.847	0	1	10618000			39209	2264	25118	25243	37747	37747					-0.01810864764956932
YRFDCFQCNYS	11	Unmodified	_YRFDCFQCNYS_					0	0	0			REV__TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	REV__TRPS1|p.N1193Mfs*5|1|0.3|ENSG00000104447|chr8:115414291-115414291|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	723.2838134765625	2	723.284279	1444.55401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.096	1	43.722	43.222	44.222	-0.37373								0	0	0	0.9598	1	16233	16233		1.1933	0	1		+		39210	11214	25119	25244	37748	37748					-0.15048886325030253
YRGPSHTY	8	Unmodified	_YRGPSHTY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	HCT116MG_D190212_S2	2	490.7328186035156	2	490.732866	979.451179	0.25999	0.00012759	0.27967	0.00013725	0.53967	0.00026483	490.7330061466915	19.492	0.36421	19.122	18.836	19.2	-0.3695					8	6	2	0	0	0	0.1772	1	6772	6772		78.149	40.175	1	6549600			39211	1317	25120	25245	37749	37749					-0.039368429391970494
YRGPSHTY	8	Unmodified	_YRGPSHTY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;FNDC3B|p.T1056Hfs*16|1|0.43|ENSG00000075420|chr3:172378419-172378420|-/C|frameshift_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MATCH	HCT116MG_D190212_S1	1		2	490.732866	979.451179	0.24283	0.00011917	0.63328	0.00031077	0.87611	0.00042994	490.73280137105644	18.764	0.2606	18.764	18.61	18.871	0	-0.17922	0.00027107	NaN	78.149	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2128700			39212	1317	25120	25245							-0.039368429391970494
YRGQHVFGVP	10	Unmodified	_YRGQHVFGVP_					0	0	0		STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant;nc|ENSG00000130052|Q92502|STARD8;STARD8|p.L976Afs*8|1|0.27|ENSG00000130052|chrX:68724090-68724091|-/G|frameshift_variant;ENSG00000130052|ENST00000374599|STARD8	STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	STARD8|p.A874Sfs*16|1|0.42|ENSG00000130052|chrX:68723677-68723678|-/C|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	387.2337341308594	3	387.205085	1158.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.172	1	29.887	29.387	30.387	-0.28453								0	0	0	0.95351	1	11082	11082		1.9064	0.1641	1				39213	3055	25121	25246	37750	37750					0.020473698029718435
YRKRKKKLKIK	11	Unmodified	_YRKRKKKLKIK_					0	0	0			REV__ENST00000495198.6_1_5:64023893-64064425:-|nuORF	REV__ENST00000495198.6_1_5:64023893-64064425:-|nuORF	MSMS	HCT116MG_D190212_S1	1	745.0173950195312	2	745.014287	1488.01402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.411	1	45.411	44.911	45.911	0								0	0	0	0.96208	1	17205	17205		0	0	1		+		39214	16083	25122	25247	37751	37751					0.2895348979800474
YRLATGCHRR	10	Unmodified	_YRLATGCHRR_					0	0	0		ENST00000493657.1_1_1:1244633-1244984:+|nuORF;ENST00000463758.1_1_1:1244702-1244984:+|nuORF;ENST00000470520.5_1_1:1244480-1246298:+|nuORF;PUSL1|p.E212Rfs*26|1|0.16|ENSG00000169972|chr1:1309836-1309836|C/-|frameshift_variant;ENSG00000169972|ENST00000379031|PUSL1	ENST00000493657.1_1_1:1244633-1244984:+|nuORF	ENST00000493657.1_1_1:1244633-1244984:+|nuORF	MSMS	HCT116MG_D190212_S1	1	616.8253173828125	2	616.825098	1231.63564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.785	1	10.785	10.285	11.285	0								0	0	0	0.97116	1	3336	3336		0	0	1				39215	5107	25123	25248	37752	37752					0.02909021939694867
YRLCQFHLH	9	Unmodified	_YRLCQFHLH_					0	0	0		CA3|p.R91C|1|0.13|ENSG00000164879|chr8:85442111-85442111|C/T|missense_variant	CA3|p.R91C|1|0.13|ENSG00000164879|chr8:85442111-85442111|C/T|missense_variant	CA3|p.R91C|1|0.13|ENSG00000164879|chr8:85442111-85442111|C/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	406.2074279785156	3	406.20632	1215.59713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.555	1	29.206	28.706	29.706	-0.34921								0	0	0	0.76875	1	10678	10678		5.2969	2.3016	1				39216	298	25124	25249	37753	37753					-0.0020428369480214315
YRLKKRRK	8	Unmodified	_YRLKKRRK_					0	0	0		ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1;nc|ENSG00000197381|P78563-6|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1	ENSG00000197381|ENST00000348831|ADARB1	ENSG00000197381|ENST00000348831|ADARB1	MULTI-SECPEP	HCT116MG_D190212_S1	1	573.6988525390625	2	574.380366	1146.74618	0.29122	0.00016727	-1.0484	-0.00060217	-0.75715	-0.00043489	574.3795415430797	60.62	0.41133	60.62	60.439	60.85	0					10	7	2	0	0	0	0.33446	1	23355	23355		2.3027	0	1	22369000			39217	6140	25125	25250	37754	37754					0.17867609990253186
YRLQRFRLRFV	11	Unmodified	_YRLQRFRLRFV_					0	0	0			REV__nc|ENSG00000198315|Q15776-2|ZKSCAN8	REV__nc|ENSG00000198315|Q15776-2|ZKSCAN8	MSMS	HCT116MG_D190212_S1	1	777.461669921875	2	777.462419	1552.91028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.079	1	38.079	37.579	38.579	0								0	0	0	0.96149	1	14246	14246		0.30703	0.30703	1		+		39218	14120	25126	25251	37755	37755					0.15594582690323477
YRLRYRRFCYW	11	Unmodified	_YRLRYRRFCYW_					0	0	0			REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MSMS	HCT116MG_D190212_S1	1	841.4327392578125	2	841.430261	1680.84597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.1	1	35.1	34.6	35.6	0								0	0	0	0.96208	1	13045	13045		0	0	1		+		39219	16703	25127	25252	37756	37756					0.032780595418898884
YRNAYTMVL	9	Unmodified	_YRNAYTMVL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	HCT116MG_D190212_S2	2	566.2796020507812	2	565.786784	1129.55902	0.78006	0.00044135	-0.038339	-2.1692E-05	0.74172	0.00041965	565.7865463902283	47.713	0.31029	47.58	47.428	47.738	-0.13281					7	5	2	0	0	0	0.069315	1	18195	18195		65.235	39.836	1	9102400			39220	986	25128	25253	37757	37757					-0.0005821440013278334
YRNAYTMVL	9	Unmodified	_YRNAYTMVL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	565.786784	1129.55902	0.3195	0.00018077	-1.1506	-0.00065099	-0.8311	-0.00047022	565.7864131101885	48.033	0.26081	47.717	47.566	47.827	-0.31596	0.06825	-0.00099057	NaN	65.235	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2671300			39221	986	25128	25253							-0.0005821440013278334
YRNRYWKEHHF	11	Unmodified	_YRNRYWKEHHF_					0	0	0		ENSG00000162482|ENST00000361640|AKR7A3	ENSG00000162482|ENST00000361640|AKR7A3	ENSG00000162482|ENST00000361640|AKR7A3	MSMS	HCT116MG_D190212_S3	3	818.3974609375	2	818.400015	1634.78548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.467	1	38.166	37.666	38.666	-0.30137								0	0	0	0.96024	1	14251	14251		0.96228	0.96228	1				39222	4525	25129	25254	37758	37758					-0.006523345168488959
YRQLFKAFQRR	11	Unmodified	_YRQLFKAFQRR_					0	0	0			REV__MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant	REV__MYO1F|p.L967Cfs*94|1|0.31|ENSG00000142347|chr19:8522785-8522785|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	504.7613525390625	3	504.956393	1511.84735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.089	1	51.089	50.589	51.589	0								0	0	0	0.95976	1	19510	19510		1.2148	0	1		+		39223	12353	25130	25255	37759	37759					0.11190016902287425
YRQYWTDEFLQ	11	Unmodified	_YRQYWTDEFLQ_					0	0	0		nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	MSMS	HCT116MG_D190212_S4	4	774.861572265625	2	774.859523	1547.70449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.077	1	36.692	36.192	37.192	-0.38486								0	0	0	0.95686	1	13593	13593		2.7352	0.45242	1				39224	4875	25131	25256	37760	37760					-0.04745080070279073
YRRHERIHMGE	11	Unmodified	_YRRHERIHMGE_					0	0	0		ENSG00000171295|ENST00000304060|ZNF440	ENSG00000171295|ENST00000304060|ZNF440	ENSG00000171295|ENST00000304060|ZNF440	MSMS	HCT116MG_D190212_S2	2	742.3738403320312	2	742.370401	1482.72625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.769	1	20.39	19.89	20.89	-0.37949								0	0	0	0.95025	1	7274	7274		6.1918	0.46	1				39225	5186	25132	25257	37761	37761					0.004194461973156649
YRRRHVHTQFH	11	Unmodified	_YRRRHVHTQFH_					0	0	0			REV__ENST00000398484.6_1_4:1019594-1019900:+|nuORF	REV__ENST00000398484.6_1_4:1019594-1019900:+|nuORF	MSMS	HCT116MG_D190212_S2	2	768.9046630859375	2	768.905799	1535.79705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.246	1	37.143	36.643	37.643	-0.10318								0	0	0	0.9465	1	13955	13955		8.1555	4.8742	1		+		39226	15375	25133	25258	37762	37762					0.05057907297145903
YRRRQHRQSPP	11	Unmodified	_YRRRQHRQSPP_					0	0	0		ENST00000466410.5_1_2:128398362-128421974:-|nuORF;ENST00000476932.5_1_2:128412197-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-2|LIMS2	ENST00000466410.5_1_2:128398362-128421974:-|nuORF	ENST00000466410.5_1_2:128398362-128421974:-|nuORF	MSMS	HCT116MG_D190212_S2	2	740.903076171875	2	740.903257	1479.79196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.471	1	19.102	18.602	19.602	-0.3695								0	0	0	0.95925	1	6753	6753		1.4819	0	1				39227	8108	25134	25259	37763	37763					0.07125603434565164
YRSGDNLY	8	Unmodified	_YRSGDNLY_					0	0	0		ENSG00000242221|ENST00000406487|PSG2	ENSG00000242221|ENST00000406487|PSG2	ENSG00000242221|ENST00000406487|PSG2	MSMS	HCT116MG_D190212_S3	3	494.2307434082031	2	494.230156	986.445759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.008	1	31.729	31.229	32.229	-0.27841								0	0	0	0.87079	1	11715	11715		16.942	1.0951	1				39228	6549	25135	25260	37764	37764					-0.04800566521680594
YRSYRRRPG	9	Unmodified	_YRSYRRRPG_					0	0	0		nc|ENSG00000108509|O94983-6|CAMTA2;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;ENST00000574442.1_1_17:4872053-4872704:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF	nc|ENSG00000108509|O94983-6|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	MSMS	HCT116MG_D190212_S3	3	605.8316650390625	2	605.831237	1209.64792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.419	1	11.466	10.966	11.966	0.04739								0	0	0	0.77025	1	3504	3504		0	0	1				39229	9419	25136	25261	37765	37765					0.051483816743939315
YRVLPYCWKG	10	Unmodified	_YRVLPYCWKG_					0	0	0		ENSG00000158423|ENST00000375327|RIBC1;nc|ENSG00000158423|Q8N443-3|RIBC1	ENSG00000158423|ENST00000375327|RIBC1	ENSG00000158423|ENST00000375327|RIBC1	MSMS	HCT116MG_D190212_S4	4	428.89129638671875	3	428.890109	1283.6485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.104	1	63.87	63.37	64.37	-0.23411								0	0	0	0.97054	1	24142	24142		0.13989	0	1				39230	4371	25137	25262	37766	37766					0.018020402792217283
YRWHQSCACWS	11	Unmodified	_YRWHQSCACWS_					0	0	0			REV__ENST00000454568.1_1_3:36211307-36211412:-|nuORF	REV__ENST00000454568.1_1_3:36211307-36211412:-|nuORF	MSMS	HCT116MG_D190212_S3	3	476.198486328125	3	476.197496	1425.57066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.1843	1	4.213	3.713	4.713	0.028732								0	0	0	0.9619	1	1260	1260		0.094841	0.094841	1		+		39231	15736	25138	25263	37767	37767					-0.12510340648418605
YRYSWSFICT	10	Unmodified	_YRYSWSFICT_					0	0	0		ENSG00000275052|ENST00000616407|PPP4R3B	ENSG00000275052|ENST00000616407|PPP4R3B	ENSG00000275052|ENST00000616407|PPP4R3B	MULTI-MSMS	HCT116MG_D190212_S4	4	663.3011474609375	2	663.302798	1324.59104	0.68518	0.00045448	-0.96981	-0.00064328	-0.28463	-0.0001888	663.3020206198662	23.617	1.8709	23.369	23.011	24.882	-0.24775					45	35	2	0	0	0	0.69965	2	8279	8279;8516		20.415	3.8487	1	3053800			39232	6676	25139	25264	37768;37769	37768					-0.058268467169909854
YSARQSEQPIG	11	Unmodified	_YSARQSEQPIG_					0	0	0			REV__ENSG00000182798|ENST00000400004|MAGEB17	REV__ENSG00000182798|ENST00000400004|MAGEB17	MULTI-MSMS	HCT116MG_D190212_S4	4	618.3041381835938	2	618.304384	1234.59421	0.40254	0.00024889	0.1319	8.1554E-05	0.53444	0.00033044	618.3042227767962	18.302	0.62145	18.121	17.682	18.304	-0.18052					16	11	2	0	0	0	0.70377	1	6095	6095		20.415	3.3016	1	3671900	+		39233	13729	25140	25265	37770	37770					-0.013698803386205327
YSDDGQKWTVY	11	Unmodified	_YSDDGQKWTVY_					0	0	0		DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant;ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	681.8060913085938	2	681.304049	1360.59355	0.74748	0.00050926	0.5838	0.00039775	1.3313	0.00090701	681.8054576097195	41.159	0.20846	41.159	41.029	41.237	0					6	3	2	0	0	0	0.29392	1	15517	15517		64.692	39.81	1	14073000			39234	647	25141	25266	37771	37771					-0.07232719778335195
YSDDGQKWTVY	11	Unmodified	_YSDDGQKWTVY_					0	0	0		DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant;ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	DCBLD2|p.K459Lfs*3|1|0.04|ENSG00000057019|chr3:98811543-98811544|-/ATGTTAA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	681.3040771484375	2	681.304049	1360.59355	0.23894	0.00016279	0.4919	0.00033514	0.73085	0.00049793	681.3044097326482	41.124	0.25745	41.055	40.882	41.14	-0.068199					11	4	3	0	0	0	0.002302	1	15523	15523		150.18	124.16	1	95587000			39235	647	25141	25266	37772	37772					-0.07232719778335195
YSDDIPHAL	9	Unmodified	_YSDDIPHAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S1	1	515.745849609375	2	515.745639	1029.47673	0.19606	0.00010112	0.076054	3.9224E-05	0.27211	0.00014034	515.745544263027	39.765	0.2597	39.765	39.605	39.865	0					6	4	2	0	0	0	0.2682	1	14952	14952		34.102	12.356	1	5132400			39236	1931	25142	25267	37773	37773					-0.036834132074318404
YSDDIPHAL	9	Unmodified	_YSDDIPHAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	HCT116MG_D190212_S2	2	515.7456665039062	2	515.745639	1029.47673	0.0041311	2.1306E-06	0.028937	1.4924E-05	0.033068	1.7055E-05	515.7456521847173	39.786	0.25768	39.713	39.584	39.842	-0.072838					9	4	3	0	0	0	0.050578	1	15011	15011		74.423	40.021	1	41104000			39237	1931	25142	25267	37774	37774					-0.036834132074318404
YSDDIPHAL	9	Unmodified	_YSDDIPHAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MSMS	HCT116MG_D190212_S4	4	515.7459106445312	2	515.745639	1029.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.123	1	39.743	39.243	40.243	-0.37936								0	0	0	0.034849	1	14709	14709		77.984	31.063	1				39238	1931	25142	25267	37775	37775					-0.036834132074318404
YSDDIPHAL	9	Unmodified	_YSDDIPHAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MATCH-MSMS	HCT116MG_D190212_S3	3		2	515.745639	1029.47673	0.070093	3.615E-05	0.71183	0.00036712	0.78192	0.00040327	515.7457359675365	40.023	0.20586	39.721	39.645	39.851	-0.30137	-0.011986	0.00062947	NaN	74.423	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7267800			39239	1931	25142	25267							-0.036834132074318404
YSDEFGNLDF	10	Unmodified	_YSDEFGNLDF_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-MSMS	HCT116MG_D190212_S3	3	603.7510986328125	2	603.751118	1205.48768	0.65204	0.00039367	-0.20584	-0.00012427	0.44621	0.0002694	603.750798337471	56.041	0.15669	55.753	55.675	55.832	-0.28773					4	2	2	0	0	0	0.77749	1	21290	21290		13.906	5.9959	1	1946800			39240	2914	25143	25268	37776	37776					-0.10684055623801214
YSDEFGNLDF	10	Unmodified	_YSDEFGNLDF_					0	0	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;nc|ENSG00000125885|Q9UJA3-3|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-MATCH	HCT116MG_D190212_S2	2		2	603.751118	1205.48768	0.77916	0.00047042	-0.53728	-0.00032438	0.24188	0.00014604	603.7509275402402	55.902	0.15374	55.717	55.639	55.793	-0.18565	-0.018364	-0.00018873	NaN	13.906	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10227000			39241	2914	25143	25268							-0.10684055623801214
YSDGSPHPF	9	Unmodified	_YSDGSPHPF_					0	0	0			REV__ABCA10|p.D301H|1|0.12|ENSG00000154263|chr17:69214809-69214809|C/G|missense_variant	REV__ABCA10|p.D301H|1|0.12|ENSG00000154263|chr17:69214809-69214809|C/G|missense_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	503.71661376953125	2	503.716882	1005.41921	0.72568	0.00036554	-1.1968	-0.00060284	-0.47109	-0.0002373	503.7163164190646	42.594	0.4161	42.524	42.325	42.741	-0.069984					11	7	2	0	0	0	0.59184	1	16180	16180		11.64	2.2929	1	11955000	+		39242	9816	25144	25269	37777	37777					-0.08328255413005081
YSDGYGRVY	9	Unmodified	_YSDGYGRVY_					0	0	0		ENST00000359369.8_1_22:36140254-36146490:-|nuORF;nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	540.2435302734375	2	540.243264	1078.47197	0.54972	0.00029698	0.091162	4.925E-05	0.64088	0.00034623	540.2430977515031	30.425	0.31126	30.425	30.244	30.555	0					12	5	3	0	0	0	0.0053819	1	11160	11160		134.3	82.027	1	17269000			39243	1689	25145	25270	37778	37778					-0.06412297350175322
YSDGYGRVY	9	Unmodified	_YSDGYGRVY_					0	0	0		ENST00000359369.8_1_22:36140254-36146490:-|nuORF;nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	540.2435302734375	2	540.243264	1078.47197	0.2932	0.0001584	0.020843	1.126E-05	0.31405	0.00016966	540.2432163309097	30.645	0.46396	30.378	30.199	30.663	-0.26704					15	8	3	0	0	0	0.0034365	1	11286	11286		160.52	108.25	1	105270000			39244	1689	25145	25270	37779	37779					-0.06412297350175322
YSDGYGRVY	9	Unmodified	_YSDGYGRVY_					0	0	0		ENST00000359369.8_1_22:36140254-36146490:-|nuORF;nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1079.4803466796875	1	1079.47925	1078.47197	0.25298	0.00027308	0.295	0.00031845	0.54798	0.00059153	1079.4796475602934	30.697	0.25751	30.43	30.251	30.508	-0.26704					7	4	2	0	0	0	0.0012137	1	11304	11304		191.38	139.11	1	19140000			39245	1689	25145	25270	37780	37780					-0.06412297350175322
YSDGYGRVY	9	Unmodified	_YSDGYGRVY_					0	0	0		ENST00000359369.8_1_22:36140254-36146490:-|nuORF;nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	540.7450561523438	2	540.243264	1078.47197	0.37645	0.00020338	0.85853	0.00046381	1.235	0.00066719	540.2436727900829	30.823	0.31234	30.563	30.448	30.761	-0.26071					11	5	3	0	0	0	0.053544	1	11253	11253		72.968	36.841	1	6534300			39246	1689	25145	25270	37781	37781					-0.06412297350175322
YSDHHENKY	9	Unmodified	_YSDHHENKY_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	HCT116MG_D190212_S2	2	596.7548217773438	2	596.754527	1191.4945	0.52904	0.0003157	0.26547	0.00015842	0.79451	0.00047412	596.7545205491112	15.32	0.20865	14.993	14.863	15.071	-0.32684					8	3	3	0	0	0	0.16285	1	5104	5104		45.74	30.902	1	4529100			39247	1225	25146	25271	37782	37782					-0.09358697952575312
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	HCT116MG_D190212_S1	1	535.21484375	2	535.214703	1068.41485	0.5607	0.00030009	-0.24524	-0.00013126	0.31546	0.00016884	535.2145396730319	20.674	0.36471	20.674	20.488	20.852	0					15	6	3	0	0	0	0.01404	1	7237	7237		134.3	58.535	1	27359000			39248	3980	25147	25272	37783	37783					-0.11661764626546756
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	HCT116MG_D190212_S2	2	535.2149047851562	2	535.214703	1068.41485	0.42197	0.00022584	0.14796	7.9192E-05	0.56993	0.00030503	535.2146766219064	21.212	0.51893	20.829	20.598	21.117	-0.38288					24	9	5	0	0	0	0.0089033	1	7435	7435		155.03	79.265	1	133350000			39249	3980	25147	25272	37784	37784					-0.11661764626546756
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	HCT116MG_D190212_S2	2	1069.42236328125	1	1069.42213	1068.41485	0.4708	0.00050349	0.32313	0.00034556	0.79393	0.00084905	1069.422183422768	21.164	0.2595	20.781	20.651	20.91	-0.38288					9	4	3	0	0	0	0.0045361	1	7458	7458		168.66	83.017	1	21036000			39250	3980	25147	25272	37785	37785					-0.11661764626546756
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	HCT116MG_D190212_S3	3	535.21533203125	2	535.214703	1068.41485	0.3399	0.00018192	0.24032	0.00012862	0.58022	0.00031054	535.2147779289564	20.601	0.83284	20.635	20.142	20.975	0.034473					19	9	3	0	0	0	0.019146	2	7125	7125;7157		122.18	64.457	1	41827000			39251	3980	25147	25272	37786;37787	37786					-0.11661764626546756
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	HCT116MG_D190212_S3	3	1069.423095703125	1	1069.42213	1068.41485	0.39834	0.00042599	0.1399	0.00014961	0.53824	0.00057561	1069.4218360907703	20.602	0.26023	20.636	20.506	20.766	0.034473					6	4	2	0	0	0	0.019146	1	7171	7171		122.18	76.48	1	2163500			39252	3980	25147	25272	37788	37788					-0.11661764626546756
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	HCT116MG_D190212_S4	4	535.2150268554688	2	535.214703	1068.41485	0.46174	0.00024713	0.18453	9.8764E-05	0.64627	0.00034589	535.2146722679039	20.926	0.67501	20.717	20.292	20.967	-0.20959					12	7	3	0	0	0	0.042655	2	7201	7201;7224		92.653	32.579	1	9746200			39253	3980	25147	25272	37789;37790	37789					-0.11661764626546756
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MATCH	HCT116MG_D190212_S1	1		1	1069.42213	1068.41485	0.87674	0.00093761	-0.49336	-0.00052761	0.38338	0.00041	1069.4215077840408	20.68	0.15598	20.68	20.592	20.748	0	-0.018972	-0.00058556	NaN	168.66	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1938200			39254	3980	25147	25272							-0.11661764626546756
YSDHYGLYH	9	Unmodified	_YSDHYGLYH_					0	0	0		ENSG00000130590|ENST00000369886|SAMD10;ENST00000478694.1_1_20:62606865-62609703:-|nuORF	ENSG00000130590|ENST00000369886|SAMD10	ENSG00000130590|ENST00000369886|SAMD10	MULTI-SECPEP	HCT116MG_D190212_S2	2	578.3388671875	2	577.748713	1153.48287	0.56881	0.00032863	0.1552	8.9667E-05	0.72401	0.0004183	577.7480914251249	40.812	0.41346	40.743	40.571	40.984	-0.069626					15	7	4	0	0	0	0.24195	1	15406	15406		12.532	5.8084	1	41679000			39255	3088	25148	25273	37791	37791					-0.08772894975913914
YSDINQEHV	9	Unmodified	_YSDINQEHV_					0	0	0		nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644;ZNF644|p.K1068Lfs*15|1|0.05|ENSG00000122482|chr1:90937971-90937972|-/GTAG|frameshift_variant	nc|ENSG00000122482|Q9H582-2|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	MSMS	HCT116MG_D190212_S2	2	552.7513427734375	2	552.751453	1103.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.504	1	26.142	25.642	26.642	-0.36164								0	0	0	0.037224	1	9592	9592		75.761	43.455	1				39256	2764	25149	25274	37792	37792					-0.05925216184095916
YSDKKYRNY	9	Unmodified	_YSDKKYRNY_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	HCT116MG_D190212_S2	2	619.2933349609375	2	618.80402	1235.59349	0.39536	0.00024465	2.0229	0.0012518	2.4183	0.0014964	619.3064227310845	17.928	0.26118	17.571	17.441	17.702	-0.35647					5	4	2	0	0	0	0.055733	1	6128	6128		76.825	47.743	1	9201500			39257	4829	25150	25275	37793	37793					-0.014886749876495742
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S1	1	456.5257568359375	3	456.191059	1365.55135	0.14087	6.4262E-05	0.19654	8.9661E-05	0.33741	0.00015392	456.52548493923035	34.363	0.26047	34.363	34.233	34.493	0					11	4	3	0	0	0	0.023414	1	12756	12756		90.964	61.683	1	22917000			39258	2820	25151	25276	37794	37794					-0.11680695186714729
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S1	1	683.783203125	2	683.78295	1365.55135	0.78195	0.00053468	-0.3207	-0.00021929	0.46124	0.00031539	683.7825005218398	34.357	0.31253	34.357	34.233	34.545	0					11	5	3	0	0	0	0.00010848	1	12757	12757		195.04	151.27	1	28699000			39259	2820	25151	25276	37795	37795					-0.11680695186714729
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S2	2	683.7833251953125	2	683.78295	1365.55135	0.60401	0.00041301	0.0775	5.2993E-05	0.68151	0.000466	683.7829246474791	34.376	0.41351	34.201	34.02	34.433	-0.17512					19	7	4	0	0	0	1.0015E-10	1	12791	12791		222.22	170.8	1	244720000			39260	2820	25151	25276	37796	37796					-0.11680695186714729
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S2	2	456.1910705566406	3	456.191059	1365.55135	0.31816	0.00014514	-0.041315	-1.8848E-05	0.27684	0.00012629	456.1909171090485	34.376	0.3103	34.201	34.072	34.382	-0.17512					15	5	4	0	0	0	0.0069584	1	12795	12795		133.12	68.433	1	133280000			39261	2820	25151	25276	37797	37797					-0.11680695186714729
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S3	3	683.7831420898438	2	683.78295	1365.55135	0.7413	0.00050689	-0.27018	-0.00018474	0.47113	0.00032215	683.7826698801367	34.684	0.25946	34.387	34.233	34.492	-0.29707					12	4	4	0	0	0	0.0040532	1	12788	12788		169.92	124.18	1	23544000			39262	2820	25151	25276	37798	37798					-0.11680695186714729
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S3	3	456.5252380371094	3	456.191059	1365.55135	0.094377	4.3054E-05	0.012966	5.9148E-06	0.10734	4.8969E-05	456.1910124417839	34.684	0.25946	34.387	34.233	34.492	-0.29707					11	4	4	0	0	0	0.066546	1	12789	12789		62.78	30.164	1	13912000			39263	2820	25151	25276	37799	37799					-0.11680695186714729
YSDKYFDEHY	10	Unmodified	_YSDKYFDEHY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	HCT116MG_D190212_S4	4	683.783447265625	2	683.78295	1365.55135	0.63271	0.00043264	-0.24924	-0.00017043	0.38347	0.00026221	683.7828512765942	34.772	0.25375	34.386	34.237	34.49	-0.38605					9	4	3	0	0	0	0.20425	1	12731	12731		59.052	42.903	1	3973900			39264	2820	25151	25276	37800	37800					-0.11680695186714729
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	533.2482299804688	2	533.248015	1064.48148	0.29022	0.00015476	0.15009	8.0035E-05	0.44031	0.0002348	533.2480243354803	36.391	0.42458	36.391	36.202	36.627	0					26	7	5	0	0	0	0.0067688	2	13551	13551;13582		122.18	66.002	1	380070000			39265	4883	25152	25277	37801;37802	37801					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	1066.4949951171875	1	1065.48875	1064.48148	0.66779	0.00071153	0.071979	7.6693E-05	0.73977	0.00078822	1065.488300390583	36.391	0.26539	36.391	36.257	36.522	0					9	4	3	0	0	0	0.068828	1	13572	13572		65.474	38.59	1	22671000			39266	4883	25152	25277	37803	37803					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	533.24853515625	2	533.248015	1064.48148	0.60423	0.0003222	-0.36694	-0.00019567	0.23728	0.00012653	533.2478386343238	36.403	0.67258	36.275	36.071	36.744	-0.12799					39	12	5	0	0	0	0.0050238	1	13603	13603		137.42	79.952	1	1591099999.9999998			39267	4883	25152	25277	37804	37804					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1065.490234375	1	1065.48875	1064.48148	0.68862	0.00073372	-0.15361	-0.00016367	0.53502	0.00057005	1065.4885231628614	36.433	0.36316	36.305	36.122	36.486	-0.12799					17	6	4	0	0	0	0.0063854	1	13605	13605		125.53	79.508	1	237990000			39268	4883	25152	25277	37805	37805					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	533.2482299804688	2	533.248015	1064.48148	0.34631	0.00018467	0.034033	1.8148E-05	0.38034	0.00020282	533.2480173819608	36.629	0.67657	36.327	36.093	36.769	-0.30113					33	12	5	0	0	0	0.0050238	1	13521	13521		137.42	82.65	1	507600000			39269	4883	25152	25277	37806	37806					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	1065.48974609375	1	1065.48875	1064.48148	0.44192	0.00047086	0.12209	0.00013008	0.56401	0.00060094	1065.4887168436148	36.628	0.31224	36.327	36.197	36.509	-0.30113					12	5	3	0	0	0	0.0050238	1	13545	13545		137.42	89.078	1	21589000			39270	4883	25152	25277	37807	37807					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	533.2479858398438	2	533.248015	1064.48148	0.46855	0.00024986	-0.043452	-2.3171E-05	0.4251	0.00022668	533.2479189819926	36.742	0.50565	36.357	36.178	36.684	-0.38486					22	9	3	0	0	0	0.0063854	1	13440	13440		125.53	70.756	1	119790000			39271	4883	25152	25277	37808	37808					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;PLK1|p.Y481Ffs*7|1|0.25|ENSG00000166851|chr16:23689508-23689509|-/TT|frameshift_variant;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	1065.4891357421875	1	1065.48875	1064.48148	0.60448	0.00064407	-0.26185	-0.000279	0.34263	0.00036507	1065.488287726875	36.747	0.2571	36.362	36.23	36.487	-0.38486					8	4	3	0	0	0	0.0063854	1	13483	13483		125.53	77.183	1	5408000			39272	4883	25152	25277	37809	37809					-0.0481852906466429
YSDLHAFYY	9	Unmodified	_YSDLHAFYY_					0	0	0		nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	MULTI-MSMS	HCT116MG_D190212_S2	2	589.76171875	2	589.761289	1177.50803	0.77945	0.00045969	0.050206	2.9609E-05	0.82965	0.0004893	589.7612304960584	47.458	0.30939	47.336	47.182	47.491	-0.12175					15	5	3	0	0	0	0.005725	1	18097	18097		131.3	95.254	1	50919000			39273	5804	25153	25278	37810	37810					-0.0736284017334583
YSDLKNLD	8	Unmodified	_YSDLKNLD_					0	0	0		ENSG00000042445|ENST00000295802|RETSAT;RETSAT|p.S601Y|1|0.05|ENSG00000042445|chr2:85343273-85343273|G/T|missense_variant	ENSG00000042445|ENST00000295802|RETSAT	ENSG00000042445|ENST00000295802|RETSAT	MSMS	HCT116MG_D190212_S1	1	484.2401428222656	2	484.24019	966.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.679	1	29.679	29.179	30.179	0								0	0	0	0.75427	1	10856	10856		26.268	3.5319	1				39274	1010	25154	25279	37811	37811					-0.018748155817320367
YSDPRFLNL	9	Unmodified	_YSDPRFLNL_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	HCT116MG_D190212_S2	2	562.79052734375	2	562.790381	1123.56621	0.44265	0.00024912	0.13094	7.3692E-05	0.57359	0.00032281	562.7905827054433	51.583	0.20521	51.399	51.321	51.527	-0.18369					5	3	2	0	0	0	0.10482	1	19826	19826		57.249	24.463	1	12830000			39275	4306	25155	25280	37812	37812					0.009368414719347129
YSDRSSGGSY	10	Unmodified	_YSDRSSGGSY_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP;ENST00000591097.5_1_19:1271671-1272439:+|nuORF	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	HCT116MG_D190212_S2	2	539.7252807617188	2	539.725435	1077.43632	0.26338	0.00014216	-0.034329	-1.8528E-05	0.22906	0.00012363	539.7253127021986	18.918	0.3653	18.549	18.418	18.784	-0.3695					13	6	3	0	0	0	0.05194	1	6553	6553		85.764	7.7039	1	22147000			39276	1638	25156	25281	37813	37813					-0.09930379597835781
YSDRSSGGSY	10	Unmodified	_YSDRSSGGSY_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP;ENST00000591097.5_1_19:1271671-1272439:+|nuORF	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MSMS	HCT116MG_D190212_S3	3	539.7257690429688	2	539.725435	1077.43632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.112	1	18.189	17.689	18.689	0.076334								0	0	0	0.19781	1	6130	6130		68.76	21.011	1				39277	1638	25156	25281	37814	37814					-0.09930379597835781
YSDRSSGGSY	10	Unmodified	_YSDRSSGGSY_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP;ENST00000591097.5_1_19:1271671-1272439:+|nuORF	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		2	539.725435	1077.43632	0.4472	0.00024137	0.11775	6.3551E-05	0.56495	0.00030492	539.7252220145232	18.428	0.20828	18.428	18.298	18.506	0	0.043382	0.00016015	NaN	85.764	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4072800			39278	1638	25156	25281							-0.09930379597835781
YSDRSSGGSY	10	Unmodified	_YSDRSSGGSY_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP;ENST00000591097.5_1_19:1271671-1272439:+|nuORF	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MATCH-MSMS	HCT116MG_D190212_S4	4		2	539.725435	1077.43632	0.3284	0.00017725	-0.058359	-3.1498E-05	0.27004	0.00014575	539.7254450521416	18.357	0.25753	18.177	18.046	18.304	-0.18051	-0.20784	-2.9953E-05	NaN	85.764	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4600800			39279	1638	25156	25281							-0.09930379597835781
YSDSLVQKGY	10	Unmodified	_YSDSLVQKGY_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	580.285400390625	2	580.285128	1158.5557	0.49193	0.00028546	0.039775	2.3081E-05	0.5317	0.00030854	580.2849761553841	32.562	0.26082	32.562	32.43	32.691	0					14	4	4	0	0	0	0.00070447	1	12041	12041		181.69	135.67	1	50664000			39280	2499	25157	25282	37815	37815					-0.017231859731282384
YSDSLVQKGY	10	Unmodified	_YSDSLVQKGY_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	580.2853393554688	2	580.285128	1158.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.776	1	32.565	32.065	33.065	-0.21135								0	0	0	2.2898E-07	1	12138	12138		165.72	121.95	1				39281	2499	25157	25282	37816	37816					-0.017231859731282384
YSDSLVQKGY	10	Unmodified	_YSDSLVQKGY_					0	0	0		MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant;nc|ENSG00000116062|P52701-2|MSH6;MSH6|p.G1105Wfs*3|2|0.25|ENSG00000116062|chr2:47803552-47803553|-/T|frameshift_variant;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-3|MSH6;nc|ENSG00000116062|P52701-4|MSH6	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MSH6|p.F882Lfs*24|1|0.31|ENSG00000116062|chr2:47800626-47800626|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	580.7872924804688	2	580.285128	1158.5557	0.6589	0.00038235	0.42074	0.00024415	1.0796	0.0006265	580.2853869775183	32.984	0.271	32.698	32.508	32.779	-0.28511					13	9	2	0	0	0	9.001E-05	2	12092	12092;12116		195.45	147.7	1	37182000			39282	2499	25157	25282	37817;37818	37817					-0.017231859731282384
YSDSTAKL	8	Unmodified	_YSDSTAKL_					0	0	0		PTOV1|p.R117Q|1|0.5|ENSG00000104960|chr19:49854692-49854692|G/A|missense_variant;ENST00000602040.5_1_19:50354666-50357992:+|nuORF;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1	PTOV1|p.R117Q|1|0.5|ENSG00000104960|chr19:49854692-49854692|G/A|missense_variant	PTOV1|p.R117Q|1|0.5|ENSG00000104960|chr19:49854692-49854692|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	442.7213439941406	2	442.721633	883.428712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.878	1	25.75	25.25	26.25	-0.12795								0	0	0	0.8837	1	9259	9259		13.906	5.3128	1				39283	1971	25158	25283	37819	37819					-0.017664871274746474
YSDVDGGG	8	Unmodified	_YSDVDGGG_					0	0	0			REV__PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	REV__PTPRB|p.P1449Lfs*9|1|0.31|ENSG00000127329|chr12:70555303-70555303|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	385.15325927734375	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.196	1	13.031	12.531	13.531	-0.16496								0	0	0	0.8837	1	4129	4129		0.79363	0	1		+		39284	11853	25159	25284	37820	37820					-0.10080181638124941
YSDVEHTSV	9	Unmodified	_YSDVEHTSV_					0	0	0		nc|ENSG00000169490|Q9BX73-2|TM2D2;ENSG00000169490|ENST00000456397|TM2D2	nc|ENSG00000169490|Q9BX73-2|TM2D2	nc|ENSG00000169490|Q9BX73-2|TM2D2	MULTI-MSMS	HCT116MG_D190212_S2	2	518.733642578125	2	518.732729	1035.4509	0.36657	0.00019015	0.14871	7.714E-05	0.51528	0.00026729	518.7328825055522	25.248	0.36463	24.873	24.712	25.076	-0.37521					8	6	2	0	0	0	0.063511	1	9110	9110		68.081	11.904	1	6750300			39285	5075	25160	25285	37821	37821					-0.06540307449722604
YSDVEHTSV	9	Unmodified	_YSDVEHTSV_					0	0	0		nc|ENSG00000169490|Q9BX73-2|TM2D2;ENSG00000169490|ENST00000456397|TM2D2	nc|ENSG00000169490|Q9BX73-2|TM2D2	nc|ENSG00000169490|Q9BX73-2|TM2D2	MULTI-MATCH	HCT116MG_D190212_S3	3		2	518.732729	1035.4509	0.35809	0.00018575	0.076752	3.9814E-05	0.43485	0.00022557	518.7327911134571	25.075	0.20844	24.969	24.787	24.995	-0.10618	0.048055	-4.5561E-06	NaN	68.081	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3740100			39286	5075	25160	25285							-0.06540307449722604
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;FBXO3|p.C199Lfs*22|1|0.36|ENSG00000110429|chr11:33755853-33755854|-/A|frameshift_variant;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MSMS	HCT116MG_D190212_S1	1	694.3177490234375	2	694.317491	1386.62043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.365	1	36.365	35.865	36.865	0								0	0	0	0.0014675	1	13554	13554		96.034	71.043	1				39287	2247	25161	25286	37822	37822					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;FBXO3|p.C199Lfs*22|1|0.36|ENSG00000110429|chr11:33755853-33755854|-/A|frameshift_variant;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-SECPEP	HCT116MG_D190212_S1	1	463.23492431640625	3	463.214086	1386.62043	0.13579	6.2901E-05	0.31862	0.00014759	0.45441	0.00021049	463.2144082164512	36.286	0.16265	36.286	36.202	36.365	0					4	2	2	0	0	0	0.35266	1	13553	13553		10.016	3.7819	1	10069000			39288	2247	25161	25286	37823	37823					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;FBXO3|p.C199Lfs*22|1|0.36|ENSG00000110429|chr11:33755853-33755854|-/A|frameshift_variant;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	HCT116MG_D190212_S2	2	694.3186645507812	2	694.317491	1386.62043	0.8621	0.00059857	0.15423	0.00010709	1.0163	0.00070566	694.3175614716134	36.276	0.3111	36.148	35.967	36.278	-0.12799					12	5	3	0	0	0	8.9367E-11	1	13577	13577		213.63	152.54	1	118660000			39289	2247	25161	25286	37824	37824					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;FBXO3|p.C199Lfs*22|1|0.36|ENSG00000110429|chr11:33755853-33755854|-/A|frameshift_variant;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	HCT116MG_D190212_S2	2	463.21417236328125	3	463.214086	1386.62043	0.39952	0.00018506	0.27057	0.00012533	0.67009	0.00031039	463.21412814734543	36.316	0.20744	36.188	36.071	36.278	-0.12799					10	3	4	0	0	0	0.033275	1	13588	13588		83.652	64.036	1	57574000			39290	2247	25161	25286	37825	37825					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;FBXO3|p.C199Lfs*22|1|0.36|ENSG00000110429|chr11:33755853-33755854|-/A|frameshift_variant;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	HCT116MG_D190212_S3	3	694.3177490234375	2	694.317491	1386.62043	0.62885	0.00043662	-0.018966	-1.3168E-05	0.60989	0.00042345	694.317278565943	36.495	0.26031	36.194	36.041	36.301	-0.30113					12	4	4	0	0	0	4.8021E-06	1	13499	13499		176.41	139.33	1	11647000			39291	2247	25161	25286	37826	37826					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;FBXO3|p.C199Lfs*22|1|0.36|ENSG00000110429|chr11:33755853-33755854|-/A|frameshift_variant;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	HCT116MG_D190212_S3	3	463.2138977050781	3	463.214086	1386.62043	0.14689	6.8039E-05	-0.3013	-0.00013957	-0.15441	-7.1527E-05	463.2141266403687	36.508	0.26031	36.207	36.041	36.301	-0.30113					12	4	4	0	0	0	0.6229	1	13503	13503		22.486	9.6301	1	5397900			39292	2247	25161	25286	37827	37827					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;FBXO3|p.C199Lfs*22|1|0.36|ENSG00000110429|chr11:33755853-33755854|-/A|frameshift_variant;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	HCT116MG_D190212_S4	4	694.8195190429688	2	694.317491	1386.62043	0.79052	0.00054887	0.11922	8.2779E-05	0.90975	0.00063165	694.3172864894915	36.625	0.15437	36.24	36.126	36.281	-0.38486					6	2	3	0	0	0	0.090869	1	13426	13426		90.964	74.398	1	4284300			39293	2247	25161	25286	37828	37828					-0.05741611167127303
YSDVHNCSY	9	Unmodified	_YSDVHNCSY_					0	0	0		ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	ENST00000557983.1_1_15:80423514-80429967:+|nuORF	MSMS	HCT116MG_D190212_S3	3	544.2117919921875	2	544.211106	1086.40766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.109	1	25.003	24.503	25.503	-0.10618								0	0	0	0.76655	1	8949	8949		13.042	0	1				39294	1472	25162	25287	37829	37829					-0.1320882049865304
YSEDLSDMHY	10	Unmodified	_YSEDLSDMHY_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	HCT116MG_D190212_S2	2	630.2481079101562	2	630.247886	1258.48122	0.43903	0.0002767	-0.050467	-3.1807E-05	0.38856	0.00024489	630.2479865534677	38.864	0.31162	38.78	38.597	38.909	-0.084618					10	5	3	0	0	0	0.0053802	1	14618	14618		166.45	116.51	1	45545000			39295	4647	25163	25288	37830	37830					-0.13768316846812922
YSEDLSDMHY	10	Unmodified	_YSEDLSDMHY_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	HCT116MG_D190212_S3	3	630.248291015625	2	630.247886	1258.48122	0.43504	0.00027418	0.1106	6.9706E-05	0.54564	0.00034389	630.2480165531578	39.108	0.20767	38.807	38.664	38.872	-0.30137					8	3	3	0	0	0	0.076419	1	14522	14522		78.728	49.646	1	5371600			39296	4647	25163	25288	37831	37831					-0.13768316846812922
YSEDLSDMHY	10	Unmodified	_YSEDLSDMHY_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MSMS	HCT116MG_D190212_S4	4	630.24853515625	2	630.247886	1258.48122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.278	1	38.898	38.398	39.398	-0.38055								0	0	0	0.93854	1	14426	14426		7.2892	1.5574	1				39297	4647	25163	25288	37832	37832					-0.13768316846812922
YSEDRIGLADY	11	Unmodified	_YSEDRIGLADY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S1	1	651.3033447265625	2	651.304049	1300.59355	1.1109	0.00072352	-0.50435	-0.00032848	0.60654	0.00039504	651.303676124509	41.57	0.26036	41.57	41.445	41.706	0					11	4	3	0	0	0	0.57532	1	15672	15672		38.176	22.026	1	20073000			39298	1680	25164	25289	37833	37833					-0.04472719778323153
YSEDRIGLADY	11	Unmodified	_YSEDRIGLADY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	HCT116MG_D190212_S2	2	651.3046264648438	2	651.304049	1300.59355	0.77621	0.00050555	0.20858	0.00013585	0.98479	0.0006414	651.3040227753795	41.541	0.25568	41.473	41.345	41.601	-0.068199					11	4	3	0	0	0	0.032389	1	15729	15729		106.37	67.152	1	38453000			39299	1680	25164	25289	37834	37834					-0.04472719778323153
YSEEECKQY	9	Unmodified	_YSEEECKQY_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MSMS	HCT116MG_D190212_S2	2	589.737060546875	2	589.737154	1177.45975	0.78651	0.00046384	0.035362	2.0854E-05	0.82188	0.00048469	589.7368847782287	24.28	0.20844	23.9	23.77	23.979	-0.38003					5	3	2	0	0	0	0.0035731	1	8710	8710		174.73	119.95	1	10392000			39300	2983	25165	25290	37835	37835					-0.12187701875541279
YSEEECKQY	9	Unmodified	_YSEEECKQY_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000127955|ENST00000649796|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MSMS	HCT116MG_D190212_S3	3	589.7376708984375	2	589.737154	1177.45975	0.44422	0.00026197	0.65756	0.00038779	1.1018	0.00064976	589.7372808600716	23.982	0.2085	23.921	23.791	23.999	-0.061449					5	3	2	0	0	0	0.41881	1	8525	8525		21.537	4.4241	1	3394400			39301	2983	25165	25290	37836	37836					-0.12187701875541279
YSEEGVYNVQY	11	Unmodified	_YSEEGVYNVQY_					0	0	0		nc|ENSG00000144827|Q9NUJ1-2|ABHD10;ABHD10|p.A285Qfs*13|1|0.14|ENSG00000144827|chr3:111991648-111991648|A/-|frameshift_variant;ENSG00000144827|ENST00000273359|ABHD10	nc|ENSG00000144827|Q9NUJ1-2|ABHD10	nc|ENSG00000144827|Q9NUJ1-2|ABHD10	MSMS	HCT116MG_D190212_S2	2	675.796630859375	2	675.796057	1349.57756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.958	1	40.889	40.389	41.389	-0.069626								0	0	0	8.8397E-11	1	15461	15461		155.95	88.873	1				39302	14	25166	25291	37837	37837					-0.08324426015224162
YSEETLRARFY	11	Unmodified	_YSEETLRARFY_					0	0	0		nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	nc|ENSG00000132305|Q16891-2|IMMT	MSMS	HCT116MG_D190212_S2	2	717.855224609375	2	717.854241	1433.69393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.714	1	38.629	38.129	39.129	-0.084618								0	0	0	0.0015697	1	14548	14548		94.909	49.169	1				39303	3177	25167	25292	37838	37838					-0.005570627246925142
YSEGSVAKKDY	11	Unmodified	_YSEGSVAKKDY_					0	0	0		ENST00000261015.4_1_2:203776641-203776755:-|nuORF	ENST00000261015.4_1_2:203776641-203776755:-|nuORF	ENST00000261015.4_1_2:203776641-203776755:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	623.8014526367188	2	623.801143	1245.58773	0.7033	0.00043872	0.20043	0.00012503	0.90373	0.00056375	623.8011071137337	20.201	0.20884	20.201	20.07	20.279	0					8	3	3	0	0	0	0.35332	1	7076	7076		59.177	26.391	1	7984300			39304	6844	25168	25293	37839	37839					-0.02523818289978408
YSEGSVAKKDY	11	Unmodified	_YSEGSVAKKDY_					0	0	0		ENST00000261015.4_1_2:203776641-203776755:-|nuORF	ENST00000261015.4_1_2:203776641-203776755:-|nuORF	ENST00000261015.4_1_2:203776641-203776755:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	623.8011474609375	2	623.801143	1245.58773	0.52128	0.00032518	-0.35806	-0.00022336	0.16322	0.00010181	623.8008811929622	20.799	0.20884	20.42	20.289	20.498	-0.37949					9	3	3	0	0	0	0.011689	1	7309	7309		136.27	96.321	1	33914000			39305	6844	25168	25293	37840	37840					-0.02523818289978408
YSEGYPGQRY	10	Unmodified	_YSEGYPGQRY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF;SHMT1|p.G147Afs*3|1|0.36|ENSG00000176974|chr17:18347575-18347575|C/-|frameshift_variant	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S1	1	610.2730712890625	2	610.272552	1218.53055	0.47882	0.00029221	-0.30052	-0.0001834	0.1783	0.00010881	610.2723471464901	27.464	0.31032	27.464	27.282	27.592	0					11	5	3	0	0	0	0.023406	1	9976	9976		114.2	66.453	1	34516000			39306	5445	25169	25294	37841	37841					-0.06997240775717728
YSEGYPGQRY	10	Unmodified	_YSEGYPGQRY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF;SHMT1|p.G147Afs*3|1|0.36|ENSG00000176974|chr17:18347575-18347575|C/-|frameshift_variant	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S2	2	610.2728881835938	2	610.272552	1218.53055	0.53297	0.00032526	-0.23296	-0.00014217	0.30001	0.00018309	610.272368385681	27.867	0.4112	27.525	27.347	27.758	-0.34201					16	7	4	0	0	0	0.01069	1	10143	10143		145.13	85.056	1	152080000			39307	5445	25169	25294	37842	37842					-0.06997240775717728
YSEGYPGQRY	10	Unmodified	_YSEGYPGQRY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF;SHMT1|p.G147Afs*3|1|0.36|ENSG00000176974|chr17:18347575-18347575|C/-|frameshift_variant	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S3	3	610.2725830078125	2	610.272552	1218.53055	0.57053	0.00034818	-0.16407	-0.00010012	0.40647	0.00024805	610.2722963934434	27.788	0.46798	27.6	27.413	27.881	-0.18847					17	8	3	0	0	0	0.023406	1	10031	10031		114.2	68.502	1	41241000			39308	5445	25169	25294	37843	37843					-0.06997240775717728
YSEGYPGQRY	10	Unmodified	_YSEGYPGQRY_					0	0	0		nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-3|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF;SHMT1|p.G147Afs*3|1|0.36|ENSG00000176974|chr17:18347575-18347575|C/-|frameshift_variant	nc|ENSG00000176974|P34896-2|SHMT1	nc|ENSG00000176974|P34896-2|SHMT1	MULTI-MSMS	HCT116MG_D190212_S4	4	610.2723999023438	2	610.272552	1218.53055	0.88536	0.00054031	-0.2577	-0.00015726	0.62766	0.00038304	610.2722503017438	27.957	0.25972	27.635	27.502	27.762	-0.32157					10	4	3	0	0	0	0.051175	1	10035	10035		86.332	46.382	1	13792000			39309	5445	25169	25294	37844	37844					-0.06997240775717728
YSEIKDFLSY	10	Unmodified	_YSEIKDFLSY_					0	0	0		nc|ENSG00000152457|Q96SD1-4|DCLRE1C;DCLRE1C|p.R685Efs*6|1|0.37|ENSG00000152457|chr10:14908434-14908434|T/-|frameshift_variant;ENSG00000152457|ENST00000378278|DCLRE1C;ENST00000492201.5_1_10:14962436-14970058:-|nuORF;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	nc|ENSG00000152457|Q96SD1-4|DCLRE1C	MSMS	HCT116MG_D190212_S2	2	632.8082275390625	2	632.808436	1263.60232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.963	1	52.774	52.274	53.274	-0.18922								0	0	0	0.35934	1	20358	20358		55.249	22.463	1				39310	650	25170	25295	37845	37845					-0.018937461418545354
YSEKHHWHL	9	Unmodified	_YSEKHHWHL_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2;ARAP2|p.T1507A|1|0.32|ENSG00000047365|chr4:36082276-36082276|T/C|missense_variant	ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	MSMS	HCT116MG_D190212_S1	1	412.86834716796875	3	412.868473	1235.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.49	1	10.49	9.9902	10.99	0								0	0	0	0.77008	1	3223	3223		0.26902	0	1				39311	1026	25171	25296	37846	37846					-0.0247781820239652
YSEKVTLRYEE	11	Unmodified	_YSEKVTLRYEE_					0	0	0			REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	REV__CMYA5|p.P4051Nfs*8|1|0.05|ENSG00000164309|chr5:79799555-79799561|AACCTGG/-|frameshift_variant	MSMS	HCT116MG_D190212_S4	4	708.8546752929688	2	708.853906	1415.69326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.496	1	44.123	43.623	44.623	-0.37347								0	0	0	0.58002	1	16395	16395		43.982	7.4756	1		+		39312	10210	25172	25297	37847	37847					0.0020409783564900863
YSENVERTKY	10	Unmodified	_YSENVERTKY_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;TANC2|p.L657Sfs*6|1|0.02|ENSG00000170921|chr17:63354997-63354998|-/T|frameshift_variant;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2;TANC2|p.P1519Lfs*33|3|0.27|ENSG00000170921|chr17:63420533-63420533|C/-|frameshift_variant	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	HCT116MG_D190212_S1	1	644.8123779296875	2	644.812042	1287.60953	0.70743	0.00045616	-0.18111	-0.00011678	0.52633	0.00033938	644.8118437050509	22.089	0.20894	22.089	21.959	22.167	0					5	3	2	0	0	0	0.00074706	1	7814	7814		180.74	124.56	1	13536000			39313	5168	25173	25298	37848	37848					-0.022770135414248216
YSENVERTKY	10	Unmodified	_YSENVERTKY_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;TANC2|p.L657Sfs*6|1|0.02|ENSG00000170921|chr17:63354997-63354998|-/T|frameshift_variant;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2;TANC2|p.P1519Lfs*33|3|0.27|ENSG00000170921|chr17:63420533-63420533|C/-|frameshift_variant	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	HCT116MG_D190212_S1	1	430.2102966308594	3	430.210453	1287.60953	0.019663	8.4594E-06	-0.035159	-1.5126E-05	-0.015495	-6.6663E-06	430.21044727259783	22.089	0.26112	22.089	21.906	22.167	0					9	4	3	0	0	0	0.42802	1	7820	7820		35.08	27.603	1	9219700			39314	5168	25173	25298	37849	37849					-0.022770135414248216
YSENVERTKY	10	Unmodified	_YSENVERTKY_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;TANC2|p.L657Sfs*6|1|0.02|ENSG00000170921|chr17:63354997-63354998|-/T|frameshift_variant;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2;TANC2|p.P1519Lfs*33|3|0.27|ENSG00000170921|chr17:63420533-63420533|C/-|frameshift_variant	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	HCT116MG_D190212_S2	2	644.8121337890625	2	644.812042	1287.60953	0.70357	0.00045367	-0.11917	-7.684E-05	0.5844	0.00037683	644.8119219586627	22.617	0.25955	22.232	22.103	22.362	-0.3852					10	4	3	0	0	0	4.0215E-17	1	8031	8031		248.96	192.78	1	60579000			39315	5168	25173	25298	37850	37850					-0.022770135414248216
YSENVERTKY	10	Unmodified	_YSENVERTKY_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;TANC2|p.L657Sfs*6|1|0.02|ENSG00000170921|chr17:63354997-63354998|-/T|frameshift_variant;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2;TANC2|p.P1519Lfs*33|3|0.27|ENSG00000170921|chr17:63420533-63420533|C/-|frameshift_variant	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	HCT116MG_D190212_S2	2	430.2101745605469	3	430.210453	1287.60953	0.11253	4.8412E-05	-0.27514	-0.00011837	-0.16261	-6.9955E-05	430.21035961873423	22.617	0.25955	22.232	22.103	22.362	-0.3852					7	4	2	0	0	0	0.15126	1	8046	8046		55.249	40.291	1	23612000			39316	5168	25173	25298	37851	37851					-0.022770135414248216
YSENVERTKY	10	Unmodified	_YSENVERTKY_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;TANC2|p.L657Sfs*6|1|0.02|ENSG00000170921|chr17:63354997-63354998|-/T|frameshift_variant;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2;TANC2|p.P1519Lfs*33|3|0.27|ENSG00000170921|chr17:63420533-63420533|C/-|frameshift_variant	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MSMS	HCT116MG_D190212_S3	3	644.8118896484375	2	644.812042	1287.60953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.141	1	22.142	21.642	22.642	0.00074577								0	0	0	0.1191	1	7752	7752		78.61	36.771	1				39317	5168	25173	25298	37852	37852					-0.022770135414248216
YSESNKAIY	9	Unmodified	_YSESNKAIY_					0	0	0		nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	MSMS	HCT116MG_D190212_S1	1	537.7591552734375	2	537.758746	1073.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.235	1	27.235	26.735	27.735	0								0	0	0	0.022654	1	9874	9874		89.401	29.011	1				39318	3667	25174	25299	37853	37853					-0.03087144035930578
YSESNKAIY	9	Unmodified	_YSESNKAIY_					0	0	0		nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-MSMS	HCT116MG_D190212_S2	2	537.7591552734375	2	537.758746	1073.50294	0.51815	0.00027864	0.10994	5.912E-05	0.62809	0.00033776	537.7587318326923	27.699	0.30929	27.357	27.191	27.5	-0.34201					12	5	3	0	0	0	0.0063854	1	10064	10064		125.53	66.85	1	80821000			39319	3667	25174	25299	37854	37854					-0.03087144035930578
YSESNKAIY	9	Unmodified	_YSESNKAIY_					0	0	0		nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-MSMS	HCT116MG_D190212_S3	3	537.7583618164062	2	537.758746	1073.50294	0.61306	0.00032968	-0.2508	-0.00013487	0.36226	0.00019481	537.7585254169516	27.575	0.67655	27.387	26.84	27.517	-0.18847					14	12	2	0	0	0	0.0050238	1	9926	9926		137.42	76.066	1	17947000			39320	3667	25174	25299	37855	37855					-0.03087144035930578
YSESNKAIY	9	Unmodified	_YSESNKAIY_					0	0	0		nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	MSMS	HCT116MG_D190212_S4	4	537.7589721679688	2	537.758746	1073.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.812	1	27.491	26.991	27.991	-0.32157								0	0	0	0.10186	1	9973	9973		55.503	13.408	1				39321	3667	25174	25299	37856	37856					-0.03087144035930578
YSESSQLLY	9	Unmodified	_YSESSQLLY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	HCT116MG_D190212_S2	2	1090.511962890625	1	1089.50988	1088.50261	0.32357	0.00035253	-0.49526	-0.00053959	-0.17169	-0.00018706	1089.5096058421123	44.152	0.2565	44.074	43.916	44.173	-0.078373					8	4	2	0	0	0	0.16144	1	16786	16786		46.021	9.8939	1	22189000			39322	1810	25175	25300	37857	37857					-0.03810563755791918
YSESSQLLY	9	Unmodified	_YSESSQLLY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	HCT116MG_D190212_S3	3	1089.510009765625	1	1089.50988	1088.50261	0.61197	0.00066675	-0.5029	-0.00054792	0.10907	0.00011883	1089.5091666375854	44.426	0.25922	44.118	43.916	44.175	-0.30759					7	4	2	0	0	0	0.063511	1	16605	16605		68.081	25.986	1	7263700			39323	1810	25175	25300	37858	37858					-0.03810563755791918
YSESSQLLY	9	Unmodified	_YSESSQLLY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MSMS	HCT116MG_D190212_S3	3	545.2591552734375	2	545.258579	1088.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.424	1	44.116	43.616	44.616	-0.30759								0	0	0	0.027064	1	16606	16606		85.272	47.298	1				39324	1810	25175	25300	37859	37859					-0.03810563755791918
YSESSQLLY	9	Unmodified	_YSESSQLLY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	HCT116MG_D190212_S4	4	545.259033203125	2	545.258579	1088.50261	0.50501	0.00027536	-0.28117	-0.00015331	0.22385	0.00012205	545.2583909334485	44.418	0.186	44.045	43.934	44.12	-0.37373					6	3	2	0	0	0	0.071351	1	16376	16376		64.236	30.134	1	5919500			39325	1810	25175	25300	37860	37860					-0.03810563755791918
YSESSQLLY	9	Unmodified	_YSESSQLLY_					0	0	0		nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1;POLA1|p.Q870Hfs*38|1|0.02|ENSG00000101868|chrX:24745478-24745479|-/CT|frameshift_variant;POLA1|p.Q870Ifs*40|1|0.04|ENSG00000101868|chrX:24745476-24745477|-/ATTAAAAG|frameshift_variant	nc|ENSG00000101868|P09884|POLA1	nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	HCT116MG_D190212_S4	4	1089.509765625	1	1089.50988	1088.50261	0.54985	0.00059907	0.043888	4.7816E-05	0.59374	0.00064689	1089.509781800208	44.418	0.23778	44.045	43.934	44.172	-0.37373					7	4	2	0	0	0	0.069315	1	16391	16391		65.235	23.14	1	4108700			39326	1810	25175	25300	37861	37861					-0.03810563755791918
YSEVYPGQQY	10	Unmodified	_YSEVYPGQQY_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	HCT116MG_D190212_S1	1	617.2747802734375	2	617.274761	1232.53497	0.60331	0.00037241	-0.41662	-0.00025717	0.18669	0.00011524	617.2743979010494	36.101	0.26045	36.101	35.942	36.202	0					10	4	3	0	0	0	0.2521	1	13464	13464		54.774	42.242	1	8830000			39327	2766	25176	25301	37862	37862					-0.07199776352786103
YSEVYPGQQY	10	Unmodified	_YSEVYPGQQY_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	HCT116MG_D190212_S3	3	617.27490234375	2	617.274761	1232.53497	0.10593	6.539E-05	0.2028	0.00012519	0.30874	0.00019057	617.274903898752	36.322	0.36407	36.022	35.886	36.25	-0.30042					12	6	3	0	0	0	0.057153	1	13437	13437		82.529	66.38	1	6998400			39328	2766	25176	25301	37863	37863					-0.07199776352786103
YSEVYPGQQY	10	Unmodified	_YSEVYPGQQY_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MSMS	HCT116MG_D190212_S4	4	617.2743530273438	2	617.274761	1232.53497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.509	1	36.124	35.624	36.624	-0.38558								0	0	0	0.89062	1	13363	13363		17.113	9.5039	1				39329	2766	25176	25301	37864	37864					-0.07199776352786103
YSEYPPFSHRY	11	Unmodified	_YSEYPPFSHRY_					0	0	0		nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF	nc|ENSG00000133872|Q96BY9-2|SARAF	nc|ENSG00000133872|Q96BY9-2|SARAF	MULTI-MSMS	HCT116MG_D190212_S1	1	482.55487060546875	3	482.554331	1444.64116	0.31487	0.00015194	0.12142	5.8592E-05	0.43629	0.00021054	482.8887910427995	35.884	0.62733	35.884	35.63	36.257	0					23	11	3	0	0	0	0.053212	1	13345	13345		74.094	71.659	1	16383000			39330	3255	25177	25302	37865	37865					-0.06337020787486836
YSEYPPFSHRY	11	Unmodified	_YSEYPPFSHRY_					0	0	0		nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF	nc|ENSG00000133872|Q96BY9-2|SARAF	nc|ENSG00000133872|Q96BY9-2|SARAF	MULTI-MSMS	HCT116MG_D190212_S1	1	723.3284912109375	2	723.327859	1444.64116	0.89518	0.00064751	0.1925	0.00013924	1.0877	0.00078675	723.3280881225902	35.856	0.62733	35.856	35.63	36.257	0					24	11	3	0	0	0	2.5549E-05	1	13387	13387		166.77	149.33	1	12729000			39331	3255	25177	25302	37866	37866					-0.06337020787486836
YSEYPPFSHRY	11	Unmodified	_YSEYPPFSHRY_					0	0	0		nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF	nc|ENSG00000133872|Q96BY9-2|SARAF	nc|ENSG00000133872|Q96BY9-2|SARAF	MULTI-MSMS	HCT116MG_D190212_S2	2	723.3294067382812	2	723.327859	1444.64116	1.3459	0.0009735	-0.67082	-0.00048522	0.67504	0.00048827	723.3274876801541	35.92	0.77416	35.792	35.452	36.226	-0.12799					35	14	3	0	0	0	0.00032081	1	13361	13361		158.08	138.45	1	52578000			39332	3255	25177	25302	37867	37867					-0.06337020787486836
YSEYPPFSHRY	11	Unmodified	_YSEYPPFSHRY_					0	0	0		nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF	nc|ENSG00000133872|Q96BY9-2|SARAF	nc|ENSG00000133872|Q96BY9-2|SARAF	MULTI-MSMS	HCT116MG_D190212_S2	2	482.55426025390625	3	482.554331	1444.64116	0.51956	0.00025072	-0.32533	-0.00015699	0.19423	9.3728E-05	482.88865025386093	35.894	0.77338	35.766	35.401	36.174	-0.12799					35	14	3	0	0	0	2.5549E-05	1	13367	13367		130.09	123.79	1	48554000			39333	3255	25177	25302	37868	37868					-0.06337020787486836
YSFIGDFTDA	10	Unmodified	_YSFIGDFTDA_					0	0	0			REV__tr|U7STJ8|U7STJ8_FUSNUAdenosylcobinamide-GDPribazoletransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobSPE=3SV=1	REV__tr|U7STJ8|U7STJ8_FUSNUAdenosylcobinamide-GDPribazoletransferaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=cobSPE=3SV=1	MSMS	HCT116MG_D190212_S4	4	568.2506713867188	2	568.250754	1134.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.76	1	31.385	30.885	31.885	-0.37529								0	0	0	0.92607	1	11540	11540		10.074	0	1		+		39334	17803	25178	25303	37869	37869					-0.07490850272847638
YSFLFKDLN	9	Unmodified	_YSFLFKDLN_					0	0	0		nc|ENSG00000122299|Q8IWR0-2|ZC3H7A;ENSG00000122299|ENST00000355758|ZC3H7A	nc|ENSG00000122299|Q8IWR0-2|ZC3H7A	nc|ENSG00000122299|Q8IWR0-2|ZC3H7A	MULTI-MSMS	HCT116MG_D190212_S2	2	573.7949829101562	2	573.795132	1145.57571	0.35646	0.00020453	0.11037	6.3327E-05	0.46682	0.00026786	573.7952847765954	28.437	0.31053	28.107	27.874	28.184	-0.32987					7	5	2	0	0	0	0.55223	1	10379	10379		13.906	0	1	26744000			39335	2757	25179	25304	37870	37870					0.008746097574885425
YSGAAGPR	8	Unmodified	_YSGAAGPR_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MSMS	HCT116MG_D190212_S3	3	389.69573974609375	2	389.695752	777.376952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.037	1	18.113	17.613	18.613	0.076334								0	0	0	0.79325	1	6100	6100		23.148	5.0134	1				39336	3572	25180	25305	37871	37871					-0.020641860307136994
YSGAAGPR	8	Unmodified	_YSGAAGPR_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	HCT116MG_D190212_S4	4	389.6957702636719	2	389.695752	777.376952	-0.068475	-2.6684E-05	0.11762	4.5836E-05	0.049145	1.9151E-05	389.69579648385775	18.149	0.31059	17.974	17.792	18.102	-0.17501					7	5	2	0	0	0	0.62424	1	6082	6082		30.225	5.5509	1	1772000			39337	3572	25180	25305	37872	37872					-0.020641860307136994
YSGDEGAA	8	Unmodified	_YSGDEGAA_					0	0	0			REV__nc|ENSG00000164808|Q14159-2|SPIDR	REV__nc|ENSG00000164808|Q14159-2|SPIDR	MSMS	HCT116MG_D190212_S4	4	385.1531066894531	2	385.153583	768.292613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.492	1	12.323	11.823	12.823	-0.16903								0	0	0	0.8837	1	3882	3882		0.69038	0	1		+		39338	13024	25181	25306	37873	37873					-0.1008018163813631
YSGECNMKR	9	Unmodified	_YSGECNMKR_					0	0	0			REV__ENST00000464344.6_1_2:242028625-242028745:-|nuORF	REV__ENST00000464344.6_1_2:242028625-242028745:-|nuORF	MSMS	HCT116MG_D190212_S3	3	363.1591491699219	3	363.160159	1086.45865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.242	1	62.01	61.51	62.51	-0.23129								0	0	0	0.7701	1	23773	23773		0.23584	0	1		+		39339	15806	25182	25307	37874	37874					-0.08112194725435984
YSGELNACLE	10	Unmodified	_YSGELNACLE_					0	0	0			REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	MSMS	HCT116MG_D190212_S1	1	549.742431640625	2	549.742239	1097.46993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.844	1	29.844	29.344	30.344	0								0	0	0	0.91971	1	10923	10923		11.495	0.67078	1		+		39340	13570	25183	25308	37875	37875					-0.07491094150327626
YSGGSSRDSY	10	Unmodified	_YSGGSSRDSY_					0	0	0			REV__ENST00000591055.5_1_19:1271297-1272439:+|nuORF	REV__ENST00000591055.5_1_19:1271297-1272439:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	539.7254638671875	2	539.725435	1077.43632	0.4472	0.00024137	0.11775	6.3551E-05	0.56495	0.00030492	539.7252220145232	18.428	0.20828	18.428	18.298	18.506	0					5	3	2	0	0	0	0.45124	1	6358	6358		38.615	0.84342	1	4072800	+		39341	11046	25184	25309	37876	37876					-0.09930379597835781
YSGGSSRDSY	10	Unmodified	_YSGGSSRDSY_					0	0	0			REV__ENST00000591055.5_1_19:1271297-1272439:+|nuORF	REV__ENST00000591055.5_1_19:1271297-1272439:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	539.7255859375	2	539.725435	1077.43632	0.3284	0.00017725	-0.058359	-3.1498E-05	0.27004	0.00014575	539.7254450521416	18.357	0.25753	18.177	18.046	18.304	-0.18051					9	4	3	0	0	0	0.20072	1	6180	6180		59.368	4.1198	1	4600800	+		39342	11046	25184	25309	37877	37877					-0.09930379597835781
YSGQQSTY	8	Unmodified	_YSGQQSTY_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MULTI-MSMS	HCT116MG_D190212_S2	2	933.3956909179688	1	933.394852	932.387576	0.70283	0.00065602	0.27488	0.00025657	0.97771	0.00091259	933.3950143096264	21.943	0.41697	21.558	21.427	21.844	-0.38503					18	7	4	0	0	0	0.030564	1	7753	7753		144.35	86.879	1	65376000			39343	4162	25185	25310	37878	37878					-0.08132248166953104
YSGQQSTY	8	Unmodified	_YSGQQSTY_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MULTI-MSMS	HCT116MG_D190212_S2	2	467.2015380859375	2	467.201064	932.387576	0.14045	6.5618E-05	0.30723	0.00014354	0.44768	0.00020916	467.2011676956323	21.942	0.26059	21.557	21.427	21.687	-0.38503					7	4	2	0	0	0	0.71077	1	7782	7782		21.747	3.6117	1	7688000			39344	4162	25185	25310	37879	37879					-0.08132248166953104
YSGQQSTY	8	Unmodified	_YSGQQSTY_					0	0	0		nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	nc|ENSG00000152795|O14979-2|HNRNPDL	MULTI-MSMS	HCT116MG_D190212_S3	3	933.3956298828125	1	933.394852	932.387576	0.78346	0.00073128	0.047009	4.3878E-05	0.83047	0.00077516	933.394893608573	21.649	0.36804	21.668	21.535	21.903	0.018446					8	6	2	0	0	0	0.030564	1	7558	7558		144.35	86.879	1	6726500			39345	4162	25185	25310	37880	37880					-0.08132248166953104
YSGWQCNIPS	10	Unmodified	_YSGWQCNIPS_					0	0	0			REV__CON__Q29RQ1	REV__CON__Q29RQ1	MULTI-MSMS	HCT116MG_D190212_S2	2	577.7474365234375	2	577.750398	1153.48624	0.56881	0.00032863	-2.762	-0.0015957	-2.1932	-0.0012671	577.7480914251249	40.812	0.41346	40.743	40.571	40.984	-0.069626					15	7	4	0	0	0	0.55624	1	15412	15412		31.268	0.6318	1	41679000	+	+	39346	10267	25186	25311	37881	37881					-0.08435968193566623
YSHHSGLEY	9	Unmodified	_YSHHSGLEY_					0	0	0		nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2	nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	MULTI-MSMS	HCT116MG_D190212_S1	1	546.7412109375	2	546.740888	1091.46722	0.3893	0.00021284	0.4579	0.00025035	0.8472	0.0004632	546.7410228258619	25.168	0.36561	25.168	24.987	25.353	0					17	6	4	0	0	0	0.0046012	1	9044	9044		141.83	114.94	1	56266000			39347	2049	25187	25312	37882	37882					-0.07485181492961601
YSHHSGLEY	9	Unmodified	_YSHHSGLEY_					0	0	0		nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2	nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	MULTI-MSMS	HCT116MG_D190212_S1	1	364.82958984375	3	364.829684	1091.46722	-0.21963	-8.0129E-05	0.067676	2.469E-05	-0.15196	-5.5439E-05	364.82966541463014	25.171	0.2613	25.171	25.04	25.301	0					6	4	2	0	0	0	0.2682	1	9049	9049		24.991	17.889	1	7583600			39348	2049	25187	25312	37883	37883					-0.07485181492961601
YSHHSGLEY	9	Unmodified	_YSHHSGLEY_					0	0	0		nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2	nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	MULTI-MSMS	HCT116MG_D190212_S2	2	547.2423706054688	2	546.740888	1091.46722	0.39553	0.00021625	0.18023	9.854E-05	0.57576	0.00031479	546.7409509157268	25.732	0.36332	25.363	25.135	25.498	-0.36914					18	6	4	0	0	0	0.0051486	1	9269	9269		136.33	105.7	1	120700000			39349	2049	25187	25312	37884	37884					-0.07485181492961601
YSHHSGLEY	9	Unmodified	_YSHHSGLEY_					0	0	0		nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2	nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	MULTI-MSMS	HCT116MG_D190212_S2	2	364.829345703125	3	364.829684	1091.46722	-0.26341	-9.6101E-05	0.46434	0.0001694	0.20093	7.3304E-05	364.8297271310439	25.733	0.25946	25.363	25.187	25.446	-0.36914					9	4	3	0	0	0	0.2682	1	9289	9289		24.991	17.889	1	17169000			39350	2049	25187	25312	37885	37885					-0.07485181492961601
YSICSCLSPDP	11	Unmodified	_YSICSCLSPDP_					0	0	0			REV__ENST00000459723.1_1_16:11219873-11243783:+|nuORF	REV__ENST00000459723.1_1_16:11219873-11243783:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	592.7518310546875	2	592.75175	1183.48895	0.47004	0.00027862	-0.17804	-0.00010553	0.292	0.00017308	592.7515990040687	19.023	0.31288	18.653	18.523	18.836	-0.3695					8	5	3	0	0	0	0.35748	1	6608	6608		8.1555	8.1555	1	5752700	+		39351	15766	25188	25313	37886	37886					-0.09545880850919275
YSIFGMSSFP	10	Unmodified	_YSIFGMSSFP_					0	0	0		SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant;ENSG00000185313|ENST00000449082|SCN10A	SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant	SCN10A|p.F1805Lfs*8|1|0.1|ENSG00000185313|chr3:38697805-38697805|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	568.2611694335938	2	568.260068	1134.50558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.25	1	23.87	23.37	24.37	-0.38003								0	0	0	0.86471	1	8681	8681		20.454	2.3186	1				39352	5820	25189	25314	37887	37887					-0.056290119026471075
YSIMIQKILFK	11	Unmodified	_YSIMIQKILFK_					0	0	0		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MSMS	HCT116MG_D190212_S2	2	692.4068603515625	2	692.407066	1382.79958	0.64456	0.0004463	-0.47051	-0.00032579	0.17405	0.00012051	692.4065190690666	52.524	1.9611	52.337	51.677	53.638	-0.18725					59	37	2	0	0	0	0.74191	1	20391	20391		5.7319	0	1	18147000			39353	2276	25190	25315	37888	37888					0.1234918186721643
YSIQDEETVP	10	Unmodified	_YSIQDEETVP_					0	0	0			REV__nc|ENSG00000118482|Q92576-2|PHF3	REV__nc|ENSG00000118482|Q92576-2|PHF3	MSMS	HCT116MG_D190212_S3	3	591.0914916992188	2	590.772051	1179.52955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.122	1	34.825	34.325	35.325	-0.29707								0	0	0	0.90475	1	12953	12953		14.838	0.93222	1		+		39354	11635	25191	25316	37889	37889					-0.0530349993530308
YSIRKKLYRKL	11	Unmodified	_YSIRKKLYRKL_					0	0	0			REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	REV__tr|U7SWR2|U7SWR2_FUSNUAutotransporterdomain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00953PE=4SV=1	MSMS	HCT116MG_D190212_S2	2	734.60400390625	2	734.461553	1466.90855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.187	1	61.038	60.538	61.538	-0.14852								0	0	0	0.95581	1	23695	23695		3.2813	2.9743	1		+		39355	17855	25192	25317	37890	37890					0.19377528881727812
YSKCLKKEPK	10	Unmodified	_YSKCLKKEPK_					0	0	0			REV__ENST00000414420.5_1_2:150224252-150305584:+|nuORF	REV__ENST00000414420.5_1_2:150224252-150305584:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	612.8464965820312	2	612.344466	1222.67438	0.53623	0.00032836	-0.53674	-0.00032867	-0.00051086	-3.1282E-07	612.3439841983804	61.149	1.3984	61	60.681	62.08	-0.14852					45	26	2	0	0	0	0.88886	1	23896	23896		1.3295	0.87119	1	5895200	+		39356	15463	25193	25318	37891	37891					0.07194889730840259
YSLEIQWWY	9	Unmodified	_YSLEIQWWY_					0	0	0		VSTM2L|p.A94Pfs*5|1|0.52|ENSG00000132821|chr20:37931791-37931791|G/-|frameshift_variant;nc|ENSG00000132821|Q96N03-2|VSTM2L;ENSG00000132821|ENST00000373461|VSTM2L;ENSG00000187135|ENST00000335523|VSTM2B	VSTM2L|p.A94Pfs*5|1|0.52|ENSG00000132821|chr20:37931791-37931791|G/-|frameshift_variant	VSTM2L|p.A94Pfs*5|1|0.52|ENSG00000132821|chr20:37931791-37931791|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	644.307373046875	2	644.305864	1286.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.179	1	60.933	60.433	61.433	-0.24588								0	0	0	0.76967	1	23344	23344		2.0598	0.21551	1				39357	3214	25194	25319	37892	37892					-0.0346600521381788
YSLKLRPVNNK	11	Unmodified	_YSLKLRPVNNK_					0	0	0			REV__ENSG00000075213|ENST00000265362|SEMA3A	REV__ENSG00000075213|ENST00000265362|SEMA3A	MSMS	HCT116MG_D190212_S1	1	666.3914794921875	2	666.393336	1330.77212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.907	1	35.907	35.407	36.407	0								0	0	0	0.95686	1	13372	13372		2.7352	1.0826	1		+		39358	10804	25195	25320	37893	37893					0.11996414651230225
YSLLRLDQPN	10	Unmodified	_YSLLRLDQPN_					0	0	0			REV__ENSG00000160401|ENST00000373295|CFAP157	REV__ENSG00000160401|ENST00000373295|CFAP157	MULTI-SECPEP	HCT116MG_D190212_S3	3	609.96875	2	609.827495	1217.64044	0.56113	0.00034219	0.046667	2.8459E-05	0.6078	0.00037065	609.8274013579071	46.778	0.52123	46.464	46.281	46.802	-0.31405					15	9	2	0	0	0	0.3093	1	17656	17656		2.9952	1.9238	1	5046900	+		39359	12830	25196	25321	37894	37894					0.04032184563470764
YSLTVQEHL	9	Unmodified	_YSLTVQEHL_					0	0	0			REV__nc|ENSG00000106003|Q8NES3-4|LFNG	REV__nc|ENSG00000106003|Q8NES3-4|LFNG	MULTI-MSMS	HCT116MG_D190212_S1	1	363.857666015625	3	363.857351	1088.55022	0.047798	1.7392E-05	0.26891	9.7846E-05	0.31671	0.00011524	363.85750614456583	17.124	0.15636	17.124	17.046	17.202	0					4	2	2	0	0	0	0.70732	1	5839	5839		2.7352	0.23671	1	2857400	+		39360	17101	25197	25322	37895	37895					0.009491352350551097
YSLVFFLFRV	10	Unmodified	_YSLVFFLFRV_					0	0	0			REV__ENST00000560166.1_1_15:65447071-65448095:-|nuORF	REV__ENST00000560166.1_1_15:65447071-65448095:-|nuORF	MSMS	HCT116MG_D190212_S1	1	430.9136047363281	3	430.91302	1289.71723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.205	1	14.205	13.705	14.705	0								0	0	0	0.97045	1	4636	4636		0.15932	0	1		+		39361	16484	25198	25323	37896	37896					0.08396027850585597
YSPSNGPP	8	Unmodified	_YSPSNGPP_					0	0	0		nc|ENSG00000129993|O75081-2|CBFA2T3;ENSG00000129993|ENST00000268679|CBFA2T3;nc|ENSG00000129993|O75081-4|CBFA2T3	nc|ENSG00000129993|O75081-2|CBFA2T3	nc|ENSG00000129993|O75081-2|CBFA2T3	MULTI-MSMS	HCT116MG_D190212_S2	2	818.2924194335938	1	818.367909	817.360633	0.79402	0.0006498	0.071561	5.8563E-05	0.86558	0.00070836	818.3680180994415	21.474	0.25928	21.091	20.91	21.169	-0.38288					6	4	2	0	0	0	0.55794	1	7534	7534		36.044	11.37	1	15105000			39362	3050	25199	25324	37897	37897					-0.055353119874666845
YSPSNGPP	8	Unmodified	_YSPSNGPP_					0	0	0		nc|ENSG00000129993|O75081-2|CBFA2T3;ENSG00000129993|ENST00000268679|CBFA2T3;nc|ENSG00000129993|O75081-4|CBFA2T3	nc|ENSG00000129993|O75081-2|CBFA2T3	nc|ENSG00000129993|O75081-2|CBFA2T3	MULTI-MSMS	HCT116MG_D190212_S2	2	409.6875915527344	2	409.687593	817.360633	-0.23415	-9.5928E-05	0.42293	0.00017327	0.18878	7.7342E-05	409.68763937567	21.474	0.31099	21.091	20.91	21.221	-0.38288					11	5	3	0	0	0	0.43493	1	7564	7564		46.921	23.772	1	27722000			39363	3050	25199	25324	37898	37898					-0.055353119874666845
YSPSNGPP	8	Unmodified	_YSPSNGPP_					0	0	0		nc|ENSG00000129993|O75081-2|CBFA2T3;ENSG00000129993|ENST00000268679|CBFA2T3;nc|ENSG00000129993|O75081-4|CBFA2T3	nc|ENSG00000129993|O75081-2|CBFA2T3	nc|ENSG00000129993|O75081-2|CBFA2T3	MULTI-MSMS	HCT116MG_D190212_S3	3	409.6876220703125	2	409.687593	817.360633	-0.10304	-4.2213E-05	0.23405	9.5887E-05	0.13101	5.3673E-05	409.68763712274426	20.723	0.20822	20.758	20.662	20.871	0.034473					5	3	2	0	0	0	0.69862	1	7203	7203		23.148	6.2061	1	2154900			39364	3050	25199	25324	37899	37899					-0.055353119874666845
YSPVTTDTQRE	11	Unmodified	_YSPVTTDTQRE_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000585609.1_1_19:11362722-11362998:-|nuORF;DOCK6|p.V456Hfs*5|1|0.04|ENSG00000130158|chr19:11243277-11243278|AC/-|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	HCT116MG_D190212_S4	4	648.8064575195312	2	648.806956	1295.59936	0.46399	0.00030104	0.14321	9.2913E-05	0.6072	0.00039395	648.8069273199615	31.37	1.1066	31	30.281	31.387	-0.37027					44	22	3	0	0	0	0.73844	1	11179	11179		7.609	7.609	1	5152900			39365	3058	25200	25325	37900	37900					-0.03661621266678594
YSQADALKY	9	Unmodified	_YSQADALKY_					0	0	0		ENST00000586714.1_1_17:40854552-40854989:-|nuORF;ENST00000431167.1_1_21:36972032-36972302:-|nuORF;ENST00000492143.5_1_7:148504740-148513906:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000108799|Q92800-3|EZH1;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000108799|ENST00000428826|EZH1;ENSG00000106462|ENST00000320356|EZH2;nc|ENSG00000108799|Q92800-2|EZH1	ENST00000586714.1_1_17:40854552-40854989:-|nuORF	ENST00000586714.1_1_17:40854552-40854989:-|nuORF	MSMS	HCT116MG_D190212_S2	2	529.2857055664062	2	529.761289	1057.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.953	1	32.742	32.242	33.242	-0.21135								0	0	0	0.29838	1	12211	12211		40.239	12.61	1				39366	2081	25201	25326	37901	37901					-0.018428401733444844
YSQDYQQFY	9	Unmodified	_YSQDYQQFY_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;ENST00000441812.6_1_3:50144918-50150831:+|nuORF;ENST00000494360.5_1_3:50144211-50147205:+|nuORF;ENST00000489437.1_1_3:50144918-50148299:+|nuORF;RBM5|p.E524Rfs*28|1|0.12|ENSG00000003756|chr3:50113493-50113493|A/-|frameshift_variant	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MSMS	HCT116MG_D190212_S3	3	621.2595825195312	2	621.259111	1240.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.815	1	42.511	42.011	43.011	-0.30472								0	0	0	0.030677	1	15961	15961		81.89	57.87	1				39367	796	25202	25327	37902	37902					-0.10696349386898873
YSRVVKVVK	9	Unmodified	_YSRVVKVVK_					0	0	0		DNAH6|p.E2899K|1|0.2|ENSG00000115423|chr2:84705715-84705715|G/A|missense_variant	DNAH6|p.E2899K|1|0.2|ENSG00000115423|chr2:84705715-84705715|G/A|missense_variant	DNAH6|p.E2899K|1|0.2|ENSG00000115423|chr2:84705715-84705715|G/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	539.8444213867188	2	539.342584	1076.67061	0.54243	0.00029255	-0.13391	-7.2222E-05	0.40852	0.00022033	539.3423688896852	60.023	0.77184	59.869	59.492	60.264	-0.15441					18	14	2	0	0	0	0.27042	1	23282	23282		0	0	1	10153000			39368	705	25203	25328	37903	37903					0.13534588019319926
YSSDTESE	8	Unmodified	_YSSDTESE_					0	0	0		SYNDIG1-MYH9|1|fusion;ENSG00000101463|ENST00000376862|SYNDIG1	SYNDIG1-MYH9|1|fusion	SYNDIG1-MYH9|1|fusion	MSMS	HCT116MG_D190212_S3	3	459.172119140625	2	459.17217	916.329786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.6934	1	2.7387	2.2387	3.2387	0.045237								0	0	0	0.8837	1	820	820		0.69038	0	1				39369	18247	25204	25329	37904	37904					-0.13172554883033172
YSSPPKKKK	9	Unmodified	_YSSPPKKKK_					0	0	0		ENST00000342745.4_1_14:70181120-70181276:+|nuORF	ENST00000342745.4_1_14:70181120-70181276:+|nuORF	ENST00000342745.4_1_14:70181120-70181276:+|nuORF	MSMS	HCT116MG_D190212_S4	4	531.8174438476562	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.836	1	45.464	44.964	45.964	-0.37206								0	0	0	0.768	1	16923	16923		7.9102	0	1				39370	7232	25205	25330	37905	37905					0.09498308748334239
YSSPYPQEY	9	Unmodified	_YSSPYPQEY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant;KAT6B|p.K962Sfs*2|1|0.13|ENSG00000156650|chr10:75021146-75021146|A/-|frameshift_variant;ENST00000490365.1_1_10:76737066-76741701:+|nuORF;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant;KAT6B|p.L1460*|1|0.36|ENSG00000156650|chr10:75029198-75029198|T/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	ENSG00000083168|ENST00000265713|KAT6A;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	HCT116MG_D190212_S2	2	567.2437744140625	2	567.242929	1132.47131	0.66787	0.00037885	0.33845	0.00019199	1.0063	0.00057083	567.2430159069971	35.779	0.35998	35.637	35.437	35.797	-0.14245					11	6	3	0	0	0	0.097615	1	13381	13381		58.679	37.142	1	17132000			39371	1428;4293	25206	25331	37906	37906					-0.08963136789884629
YSSPYPQEY	9	Unmodified	_YSSPYPQEY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant;KAT6B|p.K962Sfs*2|1|0.13|ENSG00000156650|chr10:75021146-75021146|A/-|frameshift_variant;ENST00000490365.1_1_10:76737066-76741701:+|nuORF;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant;KAT6B|p.L1460*|1|0.36|ENSG00000156650|chr10:75029198-75029198|T/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	ENSG00000083168|ENST00000265713|KAT6A;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	ENSG00000083168|ENST00000265713|KAT6A	MSMS	HCT116MG_D190212_S3	3	567.242919921875	2	567.242929	1132.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.099	1	35.798	35.298	36.298	-0.30042								0	0	0	0.76718	1	13327	13327		10.824	2.9138	1				39372	1428;4293	25206	25331	37907	37907					-0.08963136789884629
YSSPYPQEY	9	Unmodified	_YSSPYPQEY_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;KAT6A|p.D1243Mfs*51|1|0.24|ENSG00000083168|chr8:41934493-41934493|C/-|frameshift_variant;KAT6A|p.P1694Tfs*13|1|0.25|ENSG00000083168|chr8:41933141-41933142|-/G|frameshift_variant;KAT6B|p.K962Sfs*2|1|0.13|ENSG00000156650|chr10:75021146-75021146|A/-|frameshift_variant;ENST00000490365.1_1_10:76737066-76741701:+|nuORF;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant;KAT6B|p.L1460*|1|0.36|ENSG00000156650|chr10:75029198-75029198|T/-|frameshift_variant;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	ENSG00000083168|ENST00000265713|KAT6A;KAT6B|p.R1133Gfs*12|1|0.07|ENSG00000156650|chr10:75024979-75024979|A/-|frameshift_variant	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MATCH	HCT116MG_D190212_S3	3		2	567.242929	1132.47131	0.33241	0.00018856	-0.56801	-0.0003222	-0.2356	-0.00013364	567.2421106165029	36.004	0.2475	35.704	35.482	35.729	-0.30042	0.033444	-0.00094219	NaN	58.679	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3052100			39373	1428;4293	25206	25331							-0.08963136789884629
YSSSRSDLY	9	Unmodified	_YSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	HCT116MG_D190212_S2	2	539.2462768554688	2	539.246003	1076.47745	0.48922	0.00026381	0.014532	7.8362E-06	0.50375	0.00027165	539.2459436132799	28.074	0.31081	27.744	27.563	27.874	-0.32987					7	5	2	0	0	0	0.1935	1	10257	10257		41.956	17.935	1	12689000			39374	3980	25207	25332	37908	37908					-0.057726185583760525
YSSSRSDLY	9	Unmodified	_YSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MSMS	HCT116MG_D190212_S3	3	539.2466430664062	2	539.246003	1076.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.001	1	27.813	27.313	28.313	-0.18847								0	0	0	0.22243	1	10115	10115		45.74	18.111	1				39375	3980	25207	25332	37909	37909					-0.057726185583760525
YSSYRSHDHY	10	Unmodified	_YSSYRSHDHY_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-MSMS	HCT116MG_D190212_S2	2	438.8548889160156	3	438.854781	1313.54251	-0.037299	-1.6369E-05	-0.053695	-2.3564E-05	-0.090994	-3.9933E-05	438.8548190427313	18.136	0.15654	17.78	17.702	17.858	-0.35647					6	2	3	0	0	0	0.69965	1	6244	6244		13.519	4.5424	1	8873100			39376	4036	25208	25333	37910	37910					-0.10171624032523141
YSSYRSHDHY	10	Unmodified	_YSSYRSHDHY_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MSMS	HCT116MG_D190212_S2	2	657.3333740234375	2	657.778533	1313.54251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.123	1	17.766	17.266	18.266	-0.35647								0	0	0	0.0069877	1	6210	6210		128.57	86.617	1				39377	4036	25208	25333	37911	37911					-0.10171624032523141
YSSYRSHDHY	10	Unmodified	_YSSYRSHDHY_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MSMS	HCT116MG_D190212_S2	2	657.7786865234375	2	657.778533	1313.54251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.199	1	17.842	17.342	18.342	-0.35647								0	0	0	0.13337	1	6240	6240		75.571	47.076	1				39378	4036	25208	25333	37912	37912					-0.10171624032523141
YSTDENFRY	9	Unmodified	_YSTDENFRY_					0	0	0		nc|ENSG00000115267|Q9BYX4-2|IFIH1;IFIH1|p.E827Dfs*5|1|0.04|ENSG00000115267|chr2:162272361-162272362|-/ATAAGGTATTG|frameshift_variant;ENSG00000115267|ENST00000649979|IFIH1	nc|ENSG00000115267|Q9BYX4-2|IFIH1	nc|ENSG00000115267|Q9BYX4-2|IFIH1	MULTI-MSMS	HCT116MG_D190212_S2	2	597.7565307617188	2	597.756735	1193.49892	0.82985	0.00049605	-0.060591	-3.6219E-05	0.76926	0.00045983	597.7563815463687	34.79	0.25931	34.631	34.45	34.709	-0.15834					10	4	3	0	0	0	0.0053819	1	12960	12960		134.3	92.456	1	31995000			39379	2457	25209	25334	37913	37913					-0.09009233529673111
YSTDENFRY	9	Unmodified	_YSTDENFRY_					0	0	0		nc|ENSG00000115267|Q9BYX4-2|IFIH1;IFIH1|p.E827Dfs*5|1|0.04|ENSG00000115267|chr2:162272361-162272362|-/ATAAGGTATTG|frameshift_variant;ENSG00000115267|ENST00000649979|IFIH1	nc|ENSG00000115267|Q9BYX4-2|IFIH1	nc|ENSG00000115267|Q9BYX4-2|IFIH1	MULTI-MATCH	HCT116MG_D190212_S3	3		2	597.756735	1193.49892	0.61747	0.0003691	0.38945	0.0002328	1.0069	0.0006019	598.2586306804044	35.023	0.20691	34.726	34.648	34.855	-0.29707	0.04744	0.00022639	NaN	134.3	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1640700			39380	2457	25209	25334							-0.09009233529673111
YSTDRLRKWMF	11	Unmodified	_YSTDRLRKWMF_					0	0	0		nc|ENSG00000263715|P34998-5|CRHR1;nc|ENSG00000263715|P34998-3|CRHR1;nc|ENSG00000263715|P34998-4|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1	nc|ENSG00000263715|P34998-5|CRHR1	nc|ENSG00000263715|P34998-5|CRHR1	MULTI-MSMS	HCT116MG_D190212_S4	4	751.88330078125	2	751.882278	1501.75	0.91579	0.00068856	0.35105	0.00026395	1.2668	0.00095251	751.8824725758741	45.745	0.58751	45.373	45.196	45.783	-0.37206					48	18	5	0	0	0	0.74191	2	16876	16876;17021		5.2969	0.39987	1	124460000			39381	2684	25210	25335	37914;37915	37914					0.019198669111347044
YSTDRLRKWMF	11	Unmodified	_YSTDRLRKWMF_					0	0	0		nc|ENSG00000263715|P34998-5|CRHR1;nc|ENSG00000263715|P34998-3|CRHR1;nc|ENSG00000263715|P34998-4|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1	nc|ENSG00000263715|P34998-5|CRHR1	nc|ENSG00000263715|P34998-5|CRHR1	MSMS	HCT116MG_D190212_S4	4	751.8826293945312	2	751.882278	1501.75	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.261	1	45.889	45.389	46.389	-0.37206								0	0	0	0.95196	1	17078	17078		5.2969	0	1				39382	2684	25210	25335	37916	37916					0.019198669111347044
YSTQKRLRR	9	Unmodified	_YSTQKRLRR_					0	0	0		ENST00000547772.1_1_12:120664854-120703443:-|nuORF	ENST00000547772.1_1_12:120664854-120703443:-|nuORF	ENST00000547772.1_1_12:120664854-120703443:-|nuORF	MSMS	HCT116MG_D190212_S4	4	604.3553466796875	2	604.354545	1206.69454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.559	1	43.185	42.685	43.685	-0.37433								0	0	0	0.76967	1	16016	16016		2.0598	0	1				39383	8735	25211	25336	37917	37917					0.09945821505675667
YSTTGTEFASP	11	Unmodified	_YSTTGTEFASP_					0	0	0		ENSG00000008197|ENST00000008391|TFAP2D	ENSG00000008197|ENST00000008391|TFAP2D	ENSG00000008197|ENST00000008391|TFAP2D	MULTI-SECPEP	HCT116MG_D190212_S1	1	387.2601318359375	3	387.508388	1159.50333	-0.15012	-5.8173E-05	1.0028	0.00038859	0.85268	0.00033042	387.50881618721445	23.668	0.20901	23.668	23.523	23.732	0					5	3	2	0	0	0	0.36367	1	8415	8415		1.2148	1.0749	1	2957700			39384	860	25212	25337	37918	37918					-0.07003769106768232
YSVYFSLLG	9	Unmodified	_YSVYFSLLG_					0	0	0		ENST00000504246.5_1_5:87971931-87972081:-|nuORF	ENST00000504246.5_1_5:87971931-87972081:-|nuORF	ENST00000504246.5_1_5:87971931-87972081:-|nuORF	MSMS	HCT116MG_D190212_S4	4	350.1835021972656	3	350.183176	1047.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.092	1	38.712	38.212	39.212	-0.38055								0	0	0	0.76886	1	14352	14352		4.897	0	1				39385	8440	25213	25338	37919	37919					0.005835358374270072
YSYACCAATF	10	Unmodified	_YSYACCAATF_					0	0	0			REV__ENST00000262291.8_1_17:57814816-57814885:+|nuORF	REV__ENST00000262291.8_1_17:57814816-57814885:+|nuORF	MSMS	HCT116MG_D190212_S4	4	550.2179565429688	2	550.214803	1098.41505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.165	1	39.786	39.286	40.286	-0.37936								0	0	0	0.95507	1	14726	14726		3.5965	0.70727	1		+		39386	14635	25214	25339	37920	37920					-0.1302180422260335
YTADGKEVLEY	11	Unmodified	_YTADGKEVLEY_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S1	1	644.3085327148438	2	644.3088	1286.60305	0.76351	0.00049194	-0.13596	-8.76E-05	0.62755	0.00040434	644.3085296855888	37.118	0.25939	37.118	36.938	37.197	0					13	4	4	0	0	0	0.033687	1	13854	13854		109.15	59.619	1	49216000			39387	6093	25215	25340	37921	37921					-0.02878951492766646
YTADGKEVLEY	11	Unmodified	_YTADGKEVLEY_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S2	2	644.3084716796875	2	644.3088	1286.60305	0.53765	0.00034641	0.15833	0.00010201	0.69597	0.00044842	644.3087842360949	37.103	0.30902	36.988	36.859	37.168	-0.11478					16	5	4	0	0	0	0.030786	2	13897	13897;13902		125.66	76.129	1	186620000			39388	6093	25215	25340	37922;37923	37922					-0.02878951492766646
YTADGKEVLEY	11	Unmodified	_YTADGKEVLEY_					0	0	0		ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENSG00000196655|ENST00000533632|TRAPPC4	ENSG00000196655|ENST00000533632|TRAPPC4	MULTI-MSMS	HCT116MG_D190212_S3	3	644.3089599609375	2	644.3088	1286.60305	0.64662	0.00041662	1.5706	0.0010119	2.2172	0.0014286	644.3102672998393	37.357	0.43071	37.055	36.873	37.304	-0.30137					11	8	2	0	0	0	0.047716	1	13842	13842		98.73	52.99	1	15801000			39389	6093	25215	25340	37924	37924					-0.02878951492766646
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S1	1	541.1587524414062	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.5566	1	5.5566	5.0566	6.0566	0								0	0	0	0.97116	1	1672	1672		0	0	1		+		39390	12081	25216	25341	37925	37925					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S1	1	541.1591186523438	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	6.4488	1	6.4488	5.9488	6.9488	0								0	0	0	0.97116	1	1944	1944		0	0	1		+		39391	12081	25216	25341	37926	37926					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S1	1	541.1589965820312	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0249	1	7.0249	6.5249	7.5249	0								0	0	0	0.97116	1	2122	2122		0	0	1		+		39392	12081	25216	25341	37927	37927					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S1	1	541.1588745117188	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6364	1	8.6364	8.1364	9.1364	0								0	0	0	0.97116	1	2606	2606		0	0	1		+		39393	12081	25216	25341	37928	37928					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S1	1	541.1593017578125	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.028	1	13.028	12.528	13.528	0								0	0	0	0.97116	1	4212	4212		0	0	1		+		39394	12081	25216	25341	37929	37929					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S2	2	541.1588745117188	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.69368	1	0.68742	0.18742	1.1874	-0.00626								0	0	0	0.97116	1	232	232		0	0	1		+		39395	12081	25216	25341	37930	37930					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S3	3	541.15869140625	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.9583	1	4.9808	4.4808	5.4808	0.022513								0	0	0	0.97116	1	1494	1494		0	0	1		+		39396	12081	25216	25341	37931	37931					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S3	3	541.1600952148438	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.03	1	10.062	9.5624	10.562	0.032559								0	0	0	0.97116	1	3034	3034		0	0	1		+		39397	12081	25216	25341	37932	37932					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S3	3	541.1588134765625	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.228	1	12.29	11.79	12.79	0.06246								0	0	0	0.97116	1	3798	3798		0	0	1		+		39398	12081	25216	25341	37933	37933					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S3	3	541.1591186523438	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.759	1	12.821	12.321	13.321	0.06246								0	0	0	0.97116	1	4003	4003		0	0	1		+		39399	12081	25216	25341	37934	37934					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S3	3	541.15966796875	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.192	1	14.272	13.772	14.772	0.079683								0	0	0	0.97116	1	4552	4552		0	0	1		+		39400	12081	25216	25341	37935	37935					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S3	3	541.1596069335938	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.485	1	63.27	62.77	63.77	-0.21454								0	0	0	0.97116	1	24225	24225		0	0	1		+		39401	12081	25216	25341	37936	37936					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S4	4	541.1587524414062	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	4.4771	1	4.2125	3.7125	4.7125	-0.26456								0	0	0	0.97116	1	1369	1369		0	0	1		+		39402	12081	25216	25341	37937	37937					-0.23486564002428167
YTCSDCSPCC	10	Unmodified	_YTCSDCSPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MSMS	HCT116MG_D190212_S4	4	541.1590576171875	2	541.158313	1080.30207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.78	1	64.548	64.048	65.048	-0.2319								0	0	0	0.97116	1	24357	24357		0	0	1		+		39403	12081	25216	25341	37938	37938					-0.23486564002428167
YTCSSELSPP	10	Unmodified	_YTCSSELSPP_					0	0	0			REV__ENST00000565912.1_1_16:57411753-57412206:+|nuORF	REV__ENST00000565912.1_1_16:57411753-57412206:+|nuORF	MSMS	HCT116MG_D190212_S3	3	542.2384033203125	2	542.23679	1082.45903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.571	1	42.268	41.768	42.768	-0.30352								0	0	0	0.90475	1	15863	15863		14.838	3.198	1		+		39404	16538	25217	25342	37939	37939					-0.07890496524601076
YTCVDGINNY	10	Unmodified	_YTCVDGINNY_					0	0	0		SLIT2|p.S1011Y|1|0.24|ENSG00000145147|chr4:20568948-20568948|C/A|missense_variant	SLIT2|p.S1011Y|1|0.24|ENSG00000145147|chr4:20568948-20568948|C/A|missense_variant	SLIT2|p.S1011Y|1|0.24|ENSG00000145147|chr4:20568948-20568948|C/A|missense_variant	MULTI-SECPEP	HCT116MG_D190212_S4	4	580.7464599609375	2	581.247689	1160.48082	0.3729	0.00021675	-0.29366	-0.00017069	0.079241	4.6059E-05	581.247430476847	25.364	0.2601	25.084	24.902	25.162	-0.27958					6	4	2	0	0	0	0.29734	1	8993	8993		13.906	1.6654	1	3177700			39405	18171	25218	25343	37940	37940					-0.09299691776004693
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF;ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF	DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant	DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	518.277099609375	2	518.277106	1034.53966	0.77752	0.00040297	0.65164	0.00033773	1.4292	0.0007407	518.2774922345194	37.576	0.30724	37.576	37.348	37.655	0					8	5	2	0	0	0	0.047849	1	14055	14055		75.761	41.359	1	7797300			39406	658	25219	25344	37941	37941					0.023771525806068894
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF;ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF	DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant	DDX51|p.Q584Pfs*40|1|0.19|ENSG00000185163|chr12:132140122-132140123|-/G|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	518.2781372070312	2	518.277106	1034.53966	0.0766	3.97E-05	1.0026	0.00051961	1.0792	0.00055931	518.2775388453373	37.615	0.25534	37.512	37.385	37.641	-0.10318					7	4	2	0	0	0	0.0067688	1	14117	14117		122.18	80.34	1	42467000			39407	658	25219	25344	37942	37942					0.023771525806068894
YTDATSKY	8	Unmodified	_YTDATSKY_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	HCT116MG_D190212_S1	1	474.7189636230469	2	474.71909	947.423627	0.36528	0.0001734	-0.26169	-0.00012423	0.10359	4.9175E-05	474.7189604615318	20.741	0.26034	20.741	20.592	20.852	0					7	4	2	0	0	0	0.40593	1	7293	7293		49.554	7.4597	1	1983400			39408	1845	25220	25345	37943	37943					-0.05218790990102207
YTDATSKY	8	Unmodified	_YTDATSKY_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	HCT116MG_D190212_S2	2	474.71923828125	2	474.71909	947.423627	0.20118	9.5504E-05	-0.08042	-3.8177E-05	0.12076	5.7327E-05	474.71912608299505	21.237	0.20662	20.854	20.755	20.961	-0.38288					6	3	2	0	0	0	0.23645	1	7485	7485		66.457	15.602	1	10897000			39409	1845	25220	25345	37944	37944					-0.05218790990102207
YTDEDMLKY	9	Unmodified	_YTDEDMLKY_					0	0	0		SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant;ENSG00000164483|ENST00000439090|SAMD3;nc|ENSG00000164483|Q8N6K7-3|SAMD3	SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant	SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S2	2	589.3330688476562	2	589.257722	1176.50089	0.52658	0.00031029	0.63509	0.00037423	1.1617	0.00068452	589.7591477491593	40.097	0.31175	40.024	39.842	40.154	-0.072838					7	5	2	0	0	0	0.24169	1	15150	15150		20.415	18.57	1	12519000			39410	4699	25221	25346	37945	37945					-0.0802994083608155
YTDEDMLKY	9	Unmodified	_YTDEDMLKY_					0	0	0		SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant;ENSG00000164483|ENST00000439090|SAMD3;nc|ENSG00000164483|Q8N6K7-3|SAMD3	SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant	SAMD3|p.F420Lfs*4|1|0.19|ENSG00000164483|chr6:130145358-130145358|A/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S3	3		2	589.257722	1176.50089	0.43162	0.00025433	0.83612	0.00049269	1.2677	0.00074702	589.2584854250847	40.283	0.15659	39.981	39.903	40.059	-0.30161	-0.021496	7.2101E-05	NaN	20.415	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4167800			39411	4699	25221	25346							-0.0802994083608155
YTDEEFMRMS	10	Unmodified	_YTDEEFMRMS_					0	0	0			REV__ENSG00000234469|ENST00000445307|CLDN34	REV__ENSG00000234469|ENST00000445307|CLDN34	MULTI-MSMS	HCT116MG_D190212_S1	1	654.7655029296875	2	654.765388	1307.51622	0.65321	0.0004277	-0.43216	-0.00028296	0.22105	0.00014473	654.7651193578181	23.392	0.20882	23.392	23.314	23.523	0					5	3	2	0	0	0	0.82332	1	8360	8360		10.074	3.8681	1	4857700	+		39412	14328	25222	25347	37946	37946					-0.12523397310519613
YTDELVEL	8	Unmodified	_YTDELVEL_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MULTI-MSMS	HCT116MG_D190212_S2	2	981.4778442382812	1	981.477519	980.470243	0.80052	0.00078569	0.5771	0.00056641	1.3776	0.0013521	981.4778403892393	52.63	0.36176	52.443	52.295	52.657	-0.18725					10	6	2	0	0	0	0.15838	1	20240	20240		81.864	11.149	1	17999000			39413	3076	25223	25348	37947	37947					-0.020773511587890425
YTDELVEL	8	Unmodified	_YTDELVEL_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MULTI-MSMS	HCT116MG_D190212_S3	3	981.4779663085938	1	981.477519	980.470243	0.9136	0.00089667	0.49328	0.00048414	1.4069	0.0013808	981.4770980252525	52.894	0.36553	52.587	52.404	52.77	-0.30639					14	6	3	0	0	0	0.13911	1	19994	19994		86.121	22.558	1	8222800			39414	3076	25223	25348	37948	37948					-0.020773511587890425
YTDENQHQY	9	Unmodified	_YTDENQHQY_					0	0	0		TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant;ENSG00000164953|ENST00000453321|TMEM67	TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant	TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	599.2433471679688	2	599.243992	1196.47343	0.40253	0.00024121	0.091865	5.505E-05	0.4944	0.00029626	599.2438452394736	19.261	0.31212	19.261	19.131	19.443	0					13	5	3	0	0	0	9.7949E-05	1	6679	6679		199.75	123.99	1	21220000			39415	4738	25224	25349	37949	37949					-0.11694708052095848
YTDENQHQY	9	Unmodified	_YTDENQHQY_					0	0	0		TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant;ENSG00000164953|ENST00000453321|TMEM67	TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant	TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	599.244384765625	2	599.243992	1196.47343	0.66733	0.00039989	-0.13972	-8.3723E-05	0.52762	0.00031617	599.2438455917454	19.752	0.36334	19.377	19.194	19.558	-0.37503					18	6	4	0	0	0	0.0029864	1	6867	6867		181.69	110.56	1	115580000			39416	4738	25224	25349	37950	37950					-0.11694708052095848
YTDENQHQY	9	Unmodified	_YTDENQHQY_					0	0	0		TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant;ENSG00000164953|ENST00000453321|TMEM67	TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant	TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	599.2443237304688	2	599.243992	1196.47343	0.54806	0.00032842	-0.070861	-4.2463E-05	0.4772	0.00028596	599.243885183788	19.04	0.46807	19.109	18.927	19.395	0.069159					19	8	3	0	0	0	9.7949E-05	1	6494	6494		199.75	123.99	1	53245000			39417	4738	25224	25349	37951	37951					-0.11694708052095848
YTDENQHQY	9	Unmodified	_YTDENQHQY_					0	0	0		TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant;ENSG00000164953|ENST00000453321|TMEM67	TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant	TMEM67|p.I958Yfs*15|1|0.29|ENSG00000164953|chr8:93815407-93815408|-/T|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	599.24462890625	2	599.243992	1196.47343	1.1601	0.0006952	-0.6527	-0.00039113	0.50743	0.00030407	599.243497258354	19.343	0.46791	19.156	18.973	19.441	-0.18674					19	8	4	0	0	0	0.00086357	1	6559	6559		193.29	125.21	1	13148000			39418	4738	25224	25349	37952	37952					-0.11694708052095848
YTDFDGTR	8	Unmodified	_YTDFDGTR_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-SECPEP	HCT116MG_D190212_S2	2	487.25128173828125	2	487.714339	973.414125	0.12126	5.914E-05	-0.30985	-0.00015112	-0.18859	-9.1976E-05	487.71404193599096	25.582	0.2611	25.213	25.03	25.291	-0.36914					7	4	2	0	0	0	0.29148	1	9233	9233		15.248	0	1	8120700			39419	1823	25225	25350	37953	37953					-0.07364559275606553
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MSMS	HCT116MG_D190212_S1	1	619.2819213867188	2	618.78021	1235.54587	0.46902	0.00029022	-0.1587	-9.8203E-05	0.31031	0.00019201	618.7801114335074	37.785	0.36515	37.785	37.602	37.968	0					22	6	5	0	0	0	0.011728	1	14122	14122		139.78	84.279	1	210130000			39420	1823	25226	25351	37954	37954					-0.06248373978496602
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MSMS	HCT116MG_D190212_S2	2	618.7807006835938	2	618.78021	1235.54587	0.21117	0.00013067	0.19678	0.00012176	0.40796	0.00025244	618.7802522792923	37.82	0.51566	37.727	37.548	38.063	-0.09301					30	9	5	0	0	0	0.013379	1	14191	14191		135.86	95.624	1	747760000			39421	1823	25226	25351	37955	37955					-0.06248373978496602
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MSMS	HCT116MG_D190212_S2	2	1236.5552978515625	1	1236.55314	1235.54587	0.32012	0.00039584	0.076051	9.4041E-05	0.39617	0.00048988	1236.5535562455425	37.82	0.25763	37.727	37.599	37.857	-0.09301					8	4	2	0	0	0	1.5755E-06	1	14217	14217		205.91	150.41	1	38665000			39422	1823	25226	25351	37956	37956					-0.06248373978496602
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MSMS	HCT116MG_D190212_S3	3	618.7805786132812	2	618.78021	1235.54587	0.49587	0.00030683	-0.0037959	-2.3488E-06	0.49207	0.00030448	618.7800753094093	38.038	0.40549	37.737	37.583	37.989	-0.30137					25	10	4	0	0	0	0.060266	1	14046	14046		81.915	54.692	1	65878000			39423	1823	25226	25351	37957	37957					-0.06248373978496602
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MSMS	HCT116MG_D190212_S4	4	618.7803344726562	2	618.78021	1235.54587	0.26588	0.00016452	0.073362	4.5395E-05	0.33924	0.00020992	618.7801928961034	38.169	0.24912	37.786	37.66	37.909	-0.38283					9	5	2	0	0	0	0.10445	1	13985	13985		73.196	45.973	1	8457700			39424	1823	25226	25351	37958	37958					-0.06248373978496602
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	551.2282104492188	2	551.22781	1100.44107	0.45542	0.00025104	0.084156	4.6389E-05	0.53958	0.00029743	551.2277446766285	25.842	0.57125	25.473	25.239	25.81	-0.36914					14	10	2	0	0	0	0.078635	1	9337	9337		93.166	72.712	1	16129000			39425	9750	25227	25352	37959	37959					-0.10513495455074917
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	551.2283325195312	2	551.22781	1100.44107	0.53428	0.00029451	0.27565	0.00015195	0.80993	0.00044646	551.2280103886213	25.793	0.36493	25.665	25.494	25.859	-0.12795					15	6	3	0	0	0	0.11661	1	9220	9220		86.332	65.878	1	7992100			39426	9750	25227	25352	37960	37960					-0.10513495455074917
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	1101.4495849609375	1	1101.44834	1100.44107	0.50851	0.00056009	-0.47723	-0.00052564	0.03128	3.4453E-05	1101.4475774114442	25.794	0.31275	25.666	25.494	25.807	-0.12795					11	5	3	0	0	0	0.032732	1	9262	9262		107.1	72.168	1	3479900			39427	9750	25227	25352	37961	37961					-0.10513495455074917
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S4	4	551.2285766601562	2	551.22781	1100.44107	0.55283	0.00030473	0.075409	4.1568E-05	0.62824	0.0003463	551.2279803528082	25.958	0.31221	25.667	25.464	25.776	-0.29022					7	5	2	0	0	0	0.36968	1	9250	9250		57.722	45.19	1	3638000			39428	9750	25227	25352	37962	37962					-0.10513495455074917
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;PITPNM1|p.L610Wfs*101|1|0.21|ENSG00000110697|chr11:67497634-67497634|G/-|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	PITPNM2|p.S819Pfs*140|1|0.47|ENSG00000090975|chr12:122990660-122990660|G/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1101.44834	1100.44107	0.73684	0.00081159	0.1336	0.00014715	0.87044	0.00095875	1101.4482156613576	25.858	0.31153	25.489	25.343	25.654	-0.36914	-0.088892	0.00033955	NaN	107.1	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6238900			39429	9750	25227	25352							-0.10513495455074917
YTDGSQQRL	9	Unmodified	_YTDGSQQRL_					0	0	0		MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant;MTUS1|p.A567Qfs*4|1|0.2|ENSG00000129422|chr8:17754110-17754110|T/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1	MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant	MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	534.2595825195312	2	534.259445	1066.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.094	1	23.094	22.594	23.594	0								0	0	0	0.34992	1	8208	8208		36.506	7.4246	1				39430	3034	25228	25353	37963	37963					-0.026255099471882204
YTDGSQQRL	9	Unmodified	_YTDGSQQRL_					0	0	0		MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant;MTUS1|p.A567Qfs*4|1|0.2|ENSG00000129422|chr8:17754110-17754110|T/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1	MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant	MTUS1|p.V301Sfs*37|1|0.19|ENSG00000129422|chr8:17754908-17754908|T/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	534.2593994140625	2	534.259445	1066.50434	0.39711	0.00021216	-0.14083	-7.524E-05	0.25628	0.00013692	534.2592096395762	23.552	0.25962	23.169	22.988	23.247	-0.38324					7	4	2	0	0	0	0.020353	1	8418	8418		96.111	28.767	1	16721000			39431	3034	25228	25353	37964	37964					-0.026255099471882204
YTDHGSDHHY	10	Unmodified	_YTDHGSDHHY_					0	0	0		ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	616.2421264648438	2	616.241783	1230.46901	0.568	0.00035003	0.0098705	6.0826E-06	0.57787	0.00035611	616.2417940419205	15.197	0.36525	15.197	15.066	15.432	0					14	6	4	0	0	0	0.00034345	2	5053	5047;5053		189.78	124.54	1	55151000			39432	1330	25229	25354	37965;37966	37966					-0.1370017247497799
YTDHGSDHHY	10	Unmodified	_YTDHGSDHHY_					0	0	0		ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	411.16357421875	3	411.163614	1230.46901	0.005939	2.4419E-06	-0.1037	-4.2639E-05	-0.097764	-4.0197E-05	411.16356181571956	15.197	0.20892	15.197	15.118	15.327	0					9	3	4	0	0	0	0.060393	1	5054	5054		61.09	45.351	1	33156000			39433	1330	25229	25354	37967	37967					-0.1370017247497799
YTDHGSDHHY	10	Unmodified	_YTDHGSDHHY_					0	0	0		ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	411.497314453125	3	411.163614	1230.46901	-0.25843	-0.00010626	0.26842	0.00011037	0.0099971	4.1105E-06	411.1636725866218	11.503	0.38301	11.221	11.036	11.419	-0.28186					39	15	4	0	0	0	0.68372	1	3677	3677		13.615	9.7385	1	3587200			39434	1330	25229	25354	37968	37968					-0.1370017247497799
YTDHGSDHHY	10	Unmodified	_YTDHGSDHHY_					0	0	0		ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	616.242431640625	2	616.241783	1230.46901	0.26576	0.00016377	0.07897	4.8664E-05	0.34473	0.00021244	616.2418213940597	11.531	0.33352	11.249	11.057	11.391	-0.28186					36	13	3	0	0	0	0.12519	1	3678	3678		69.105	50.97	1	2598100			39435	1330	25229	25354	37969	37969					-0.1370017247497799
YTDHGSDHHY	10	Unmodified	_YTDHGSDHHY_					0	0	0		ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	616.2418212890625	2	616.241783	1230.46901	0.2678	0.00016503	0.077423	4.7711E-05	0.34522	0.00021274	616.2419522286169	15.32	1.0953	14.993	14.758	15.854	-0.32684					48	20	5	0	0	0	0.00034345	2	5062	5062;5328		189.78	128.42	1	373670000			39436	1330	25229	25354	37970;37971	37970					-0.1370017247497799
YTDHGSDHHY	10	Unmodified	_YTDHGSDHHY_					0	0	0		ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	411.1637268066406	3	411.163614	1230.46901	-0.25764	-0.00010593	0.22293	9.1662E-05	-0.034705	-1.4269E-05	411.163691263718	15.32	0.62544	14.993	14.81	15.436	-0.32684					32	11	4	0	0	0	0.095673	1	5072	5072		55.235	33.644	1	113810000			39437	1330	25229	25354	37972	37972					-0.1370017247497799
YTDHGSDHHY	10	Unmodified	_YTDHGSDHHY_					0	0	0		ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1231.4764404296875	1	1231.47629	1230.46901	0.40699	0.0005012	-0.68867	-0.00084808	-0.28168	-0.00034688	1231.4758151005624	15.32	0.20865	14.993	14.863	15.071	-0.32684					6	3	2	0	0	0	0.011999	1	5091	5091		139.14	89.205	1	6341500			39438	1330	25229	25354	37973	37973					-0.1370017247497799
YTDHGSDHHYR	11	Unmodified	_YTDHGSDHHYR_					0	0	0		ENST00000541475.5_1_11:114278100-114278526:+|nuORF;ENST00000265882.5_1_2:80389676-80390174:-|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	463.197265625	3	463.197318	1386.57013	0.052857	2.4483E-05	0.18984	8.7935E-05	0.2427	0.00011242	463.1974548590735	10.355	0.1964	10.09	9.9593	10.156	-0.26472					17	11	2	0	0	0	0.74191	1	3242	3242		0.40827	0.26837	1	594330			39439	1330	25230	25355	37974	37974					-0.10769720772282199
YTDHQNSSSY	10	Unmodified	_YTDHQNSSSY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S1	1	601.24169921875	2	601.241449	1200.46835	0.52149	0.00031354	0.023862	1.4347E-05	0.54535	0.00032789	601.2413966520857	18.219	0.57326	18.219	18.037	18.61	0					26	10	4	0	0	0	0.023414	1	6252	6252		114.19	37.362	1	112720000			39440	2881	25231	25356	37975	37975					-0.12387011914688628
YTDHQNSSSY	10	Unmodified	_YTDHQNSSSY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S2	2	601.2417602539062	2	601.241449	1200.46835	0.3049	0.00018332	0.1805	0.00010852	0.4854	0.00029184	601.2415554040319	18.71	0.6767	18.346	18.217	18.894	-0.36325					34	12	5	0	0	0	0.035798	1	6447	6447		97.741	29.903	1	339710000			39441	2881	25231	25356	37976	37976					-0.12387011914688628
YTDHQNSSSY	10	Unmodified	_YTDHQNSSSY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S2	2	1201.477294921875	1	1201.47562	1200.46835	0.11734	0.00014098	0.38256	0.00045963	0.4999	0.00060062	1201.4765071317654	18.71	0.31169	18.346	18.217	18.529	-0.36325					11	5	3	0	0	0	0.00034544	1	6470	6470		189.73	123.27	1	15869000			39442	2881	25231	25356	37977	37977					-0.12387011914688628
YTDHQNSSSY	10	Unmodified	_YTDHQNSSSY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S3	3	601.2416381835938	2	601.241449	1200.46835	0.37235	0.00022387	0.10554	6.3454E-05	0.47789	0.00028733	601.2414715068346	17.895	0.62457	17.976	17.742	18.366	0.081358					31	11	5	0	0	0	0.021392	1	6025	6025		117.84	49.999	1	67499000			39443	2881	25231	25356	37978	37978					-0.12387011914688628
YTDHQNSSSYY	11	Unmodified	_YTDHQNSSSYY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S1	1	683.2750854492188	2	682.773113	1363.53167	0.58783	0.00040135	-0.15321	-0.00010461	0.43462	0.00029674	682.772948048058	25.269	0.46921	25.269	25.092	25.561	0					22	8	4	0	0	0	0.047716	2	9076	9058;9076		98.73	66.692	1	70482000			39444	2881	25232	25357	37979;37980	37980					-0.13555071197447432
YTDHQNSSSYY	11	Unmodified	_YTDHQNSSSYY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S2	2	682.7733154296875	2	682.773113	1363.53167	0.32574	0.00022241	0.23028	0.00015723	0.55602	0.00037963	682.7732243181628	25.686	0.72717	25.317	25.135	25.862	-0.36914					36	13	5	0	0	0	0.032082	1	9248	9248		101.54	66.611	1	539760000			39445	2881	25232	25357	37981	37981					-0.13555071197447432
YTDHQNSSSYY	11	Unmodified	_YTDHQNSSSYY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S2	2	1364.54052734375	1	1364.53895	1363.53167	0.58156	0.00079357	0.52453	0.00071574	1.1061	0.0015093	1364.5397825095101	25.686	0.25946	25.317	25.187	25.446	-0.36914					7	4	2	0	0	0	8.9441E-06	1	9294	9294		174.48	144.64	1	12026000			39446	2881	25232	25357	37982	37982					-0.13555071197447432
YTDHQNSSSYY	11	Unmodified	_YTDHQNSSSYY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	HCT116MG_D190212_S4	4	682.7733764648438	2	682.773113	1363.53167	0.76209	0.00052034	-0.15422	-0.0001053	0.60787	0.00041504	682.7729337655514	25.728	0.52039	25.438	25.255	25.776	-0.29022					26	9	4	0	0	0	0.034697	2	9128	9078;9128		111.31	76.377	1	77754000			39447	2881	25232	25357	37983;37984	37984					-0.13555071197447432
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	537.2670288085938	2	537.266739	1072.51892	0.53876	0.00028946	-0.37072	-0.00019918	0.16804	9.0281E-05	537.2664609227684	24.281	0.31424	24.281	24.098	24.412	0					8	5	2	0	0	0	0.0087514	1	8689	8689		165.72	54.433	1	22242000			39448	6428	25233	25358	37985	37985					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S1	1	358.5135803222656	3	358.513585	1072.51892	0.012955	4.6446E-06	-0.31054	-0.00011133	-0.29758	-0.00010669	358.5134112989116	24.281	0.26205	24.281	24.098	24.36	0					9	4	3	0	0	0	0.40176	1	8702	8702		49.554	23.286	1	10842000			39449	6428	25233	25358	37986	37986					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	537.2671508789062	2	537.266739	1072.51892	0.49458	0.00026572	0.14561	7.8234E-05	0.64019	0.00034395	537.2668361744637	24.802	0.67623	24.426	23.983	24.66	-0.37521					24	12	3	0	0	0	0.0052776	3	8895	8874;8895;8940		171.09	47.635	1	326150000			39450	6428	25233	25358	37987;37988;37989	37988					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	358.51348876953125	3	358.513585	1072.51892	-0.1432	-5.1339E-05	0.21325	7.6454E-05	0.070054	2.5115E-05	358.51360225939317	24.802	0.41567	24.426	24.192	24.608	-0.37521					15	7	3	0	0	0	0.079196	1	8905	8905		96.367	29.91	1	126240000			39451	6428	25233	25358	37990	37990					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1073.5267333984375	1	1073.5262	1072.51892	0.50424	0.00054132	0.6759	0.0007256	1.1801	0.0012669	1073.5267971689248	24.802	0.20765	24.426	24.296	24.504	-0.37521					5	3	2	0	0	0	0.020449	1	8913	8913		152.89	63.932	1	23839000			39452	6428	25233	25358	37991	37991					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	537.2669067382812	2	537.266739	1072.51892	0.39387	0.00021161	0.18765	0.00010082	0.58152	0.00031243	537.2667717161128	24.398	0.41617	24.315	24.081	24.497	-0.083694					20	7	4	0	0	0	0.010489	1	8663	8663		163.04	66.751	1	83201000			39453	6428	25233	25358	37992	37992					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	358.5134582519531	3	358.513585	1072.51892	-0.16512	-5.9197E-05	-0.037566	-1.3468E-05	-0.20268	-7.2665E-05	358.51352690515597	24.399	0.36413	24.315	24.133	24.497	-0.083694					18	6	4	0	0	0	0.079196	1	8664	8664		86.332	28.61	1	49595000			39454	6428	25233	25358	37993	37993					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	537.2666625976562	2	537.266739	1072.51892	0.60735	0.00032631	-0.066598	-3.5781E-05	0.54075	0.00029053	537.2665655534221	24.688	0.41537	24.419	24.289	24.705	-0.26881					12	7	3	0	0	0	0.0017066	1	8715	8715		179.17	55.723	1	29937000			39455	6428	25233	25358	37994	37994					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	358.5137634277344	3	358.513585	1072.51892	0.14204	5.0922E-05	-0.18723	-6.7124E-05	-0.045192	-1.6202E-05	358.51347325696423	24.688	0.31141	24.419	24.289	24.601	-0.26881					10	5	3	0	0	0	0.26254	1	8719	8719		53.404	23.563	1	14717000			39456	6428	25233	25358	37995	37995					-0.014434377990482972
YTDKIMTY	8	Oxidation (M)	_YTDKIM(Oxidation (M))TY_		YTDKIM(1)TY		YTDKIM(64)TY	0	0	1		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	HCT116MG_D190212_S1	1	525.7446899414062	2	525.74425	1049.47395	0.58302	0.00030652	-0.036639	-1.9263E-05	0.54638	0.00028725	525.744298577253	28.981	0.26111	28.981	28.851	29.112	0					9	4	3	0	0	0	0.2491	1	10587	10587		63.961	14.028	1	13472000			39457	1338	25234	25359	37996	37996		22			-0.048810046565904486
YTDKIMTY	8	Oxidation (M)	_YTDKIM(Oxidation (M))TY_		YTDKIM(1)TY		YTDKIM(76)TY	0	0	1		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	HCT116MG_D190212_S2	2	525.7445068359375	2	525.74425	1049.47395	0.58495	0.00030753	0.14295	7.5157E-05	0.7279	0.00038269	525.7442968886337	29.357	0.2565	29.056	28.929	29.185	-0.30095					7	4	2	0	0	0	0.1893	1	10773	10773		75.761	28.012	1	31548000			39458	1338	25234	25359	37997	37997		22			-0.048810046565904486
YTDKIMTY	8	Unmodified	_YTDKIMTY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	HCT116MG_D190212_S1	1	517.7469482421875	2	517.746793	1033.47903	0.38615	0.00019993	0.17601	9.1127E-05	0.56215	0.00029105	517.7467159152479	36.286	0.3723	36.286	36.098	36.47	0					16	6	4	0	0	0	0.068672	1	13508	13508		103.42	40.847	1	61781000			39459	1338	25234	25360	37998	37998					-0.0363670079395888
YTDKIMTY	8	Unmodified	_YTDKIMTY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	HCT116MG_D190212_S1	1	1034.48486328125	1	1034.48631	1033.47903	0.84014	0.00086912	-0.47061	-0.00048684	0.36954	0.00038228	1035.489811549029	36.257	0.16234	36.257	36.15	36.312	0					4	2	2	0	0	0	0.12475	1	13529	13529		89.401	15.004	1	6209900			39460	1338	25234	25360	37999	37999					-0.0363670079395888
YTDKIMTY	8	Unmodified	_YTDKIMTY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	HCT116MG_D190212_S2	2	517.7471923828125	2	517.746793	1033.47903	0.46246	0.00023944	0.238	0.00012322	0.70045	0.00036266	517.7469162552353	36.328	0.31121	36.2	36.019	36.33	-0.12799					16	5	4	0	0	0	0.10825	1	13582	13582		93.166	21.244	1	339220000			39461	1338	25234	25360	38000	38000					-0.0363670079395888
YTDKIMTY	8	Unmodified	_YTDKIMTY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	HCT116MG_D190212_S2	2	1034.4871826171875	1	1034.48631	1033.47903	0.72787	0.00075297	0.27481	0.00028429	1.0027	0.0010373	1034.4866426694614	36.328	0.25912	36.2	36.071	36.33	-0.12799					10	4	3	0	0	0	0.065346	1	13591	13591		106.94	32.544	1	77118000			39462	1338	25234	25360	38001	38001					-0.0363670079395888
YTDKIMTY	8	Unmodified	_YTDKIMTY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	HCT116MG_D190212_S3	3	517.746826171875	2	517.746793	1033.47903	0.06004	3.1086E-05	0.41696	0.00021588	0.477	0.00024697	517.7469199236056	36.524	0.36447	36.223	36.041	36.405	-0.30113					15	6	3	0	0	0	0.55268	1	13544	13544		36.506	10.238	1	39912000			39463	1338	25234	25360	38002	38002					-0.0363670079395888
YTDKIMTY	8	Unmodified	_YTDKIMTY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1034.48631	1033.47903	0.34853	0.00036055	0.21544	0.00022287	0.56397	0.00058342	1034.4864777147502	36.51	0.26031	36.209	36.041	36.301	-0.30113	-0.013494	8.8109E-05	NaN	106.94	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3621600			39464	1338	25234	25360							-0.0363670079395888
YTDKVVIGM	9	Unmodified	_YTDKVVIGM_					0	0	0		ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1	ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant	ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	513.2709350585938	2	513.270435	1024.52632	0.12914	6.6281E-05	0.34565	0.00017741	0.47479	0.00024369	513.2704277641016	41.079	0.25745	41.011	40.882	41.14	-0.068199					7	4	2	0	0	0	0.051033	1	15538	15538		74.2	34.242	1	26615000			39465	780	25235	25361	38003	38003					0.015035784770361715
YTDKVVIGM	9	Unmodified	_YTDKVVIGM_					0	0	0		ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant;nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1	ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant	ENO1|p.D318Mfs*5|1|0.43|ENSG00000074800|chr1:8864006-8864006|C/-|frameshift_variant	MULTI-MATCH	HCT116MG_D190212_S1	1		2	513.270435	1024.52632	0.32545	0.00016704	0.020184	1.036E-05	0.34563	0.0001774	513.2704197029035	41.092	0.19972	41.092	40.986	41.185	0	0.040397	-0.00013675	NaN	74.2	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2682400			39466	780	25235	25361							0.015035784770361715
YTDMESEDY	9	Unmodified	_YTDMESEDY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	HCT116MG_D190212_S3	3	1152.404052734375	1	1152.40376	1151.39649	0.54133	0.00062383	-0.01802	-2.0766E-05	0.52331	0.00060307	1152.4038979000425	32.559	0.36456	32.281	32.098	32.463	-0.27841					13	6	3	0	0	0	0.023611	1	11940	11940		92.822	65.938	1	10906000			39467	1474	25236	25362	38004	38004					-0.17315687383438672
YTDMESEDY	9	Unmodified	_YTDMESEDY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	HCT116MG_D190212_S3	3	577.2073974609375	2	576.705519	1151.39649	0.51733	0.00029835	-0.3962	-0.00022849	0.12113	6.9857E-05	577.2068972279218	32.531	0.20823	32.252	32.15	32.358	-0.27841					5	3	2	0	0	0	0.26328	1	11956	11956		7.9102	7.9102	1	2035900			39468	1474	25236	25362	38005	38005					-0.17315687383438672
YTDMESEDY	9	Unmodified	_YTDMESEDY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	HCT116MG_D190212_S4	4	1152.4036865234375	1	1152.40376	1151.39649	0.45891	0.00052885	0.1582	0.00018231	0.61711	0.00071116	1152.4040004036456	32.534	0.31152	32.154	32.001	32.312	-0.37924					7	5	2	0	0	0	0.14972	1	11893	11893		48.346	30.211	1	3194100			39469	1474	25236	25362	38006	38006					-0.17315687383438672
YTDMESEDY	9	Unmodified	_YTDMESEDY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	HCT116MG_D190212_S2	2		1	1152.40376	1151.39649	0.40581	0.00046765	0.0079808	9.1972E-06	0.41379	0.00047685	1152.4036598423543	32.337	0.20766	32.107	31.995	32.202	-0.23009	-0.073807	-3.9469E-05	NaN	92.822	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7320800			39470	1474	25236	25362							-0.17315687383438672
YTDPAGLRNY	10	Unmodified	_YTDPAGLRNY_					0	0	0		nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	MULTI-MSMS	HCT116MG_D190212_S2	2	585.2833862304688	2	585.28292	1168.55129	0.8556	0.00050077	0.023336	1.3658E-05	0.87893	0.00051443	585.282847716846	33.55	0.25631	33.357	33.174	33.43	-0.19297					11	4	3	0	0	0	0.040924	1	12475	12475		93.938	40.105	1	31730000			39471	2428	25237	25363	38007	38007					-0.026246503960464906
YTDPAGLRNY	10	Unmodified	_YTDPAGLRNY_					0	0	0		nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	MULTI-MSMS	HCT116MG_D190212_S3	3	585.28271484375	2	585.28292	1168.55129	0.48511	0.00028392	-0.061176	-3.5805E-05	0.42393	0.00024812	585.2826993318205	33.775	0.3113	33.485	33.304	33.615	-0.29013					10	5	3	0	0	0	0.032631	1	12415	12415		100.09	42.619	1	13626000			39472	2428	25237	25363	38008	38008					-0.026246503960464906
YTDPAGLRNY	10	Unmodified	_YTDPAGLRNY_					0	0	0		nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	MULTI-MSMS	HCT116MG_D190212_S4	4	585.2833862304688	2	585.28292	1168.55129	0.57189	0.00033472	-0.31028	-0.0001816	0.26161	0.00015312	585.2835504429025	33.876	0.25874	33.491	33.311	33.569	-0.38426					8	4	3	0	0	0	0.13161	1	12355	12355		67.838	14.005	1	3613300			39473	2428	25237	25363	38009	38009					-0.026246503960464906
YTDPAGLRNY	10	Unmodified	_YTDPAGLRNY_					0	0	0		nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	nc|ENSG00000114650|Q12770-4|SCAP	MULTI-MATCH	HCT116MG_D190212_S1	1		2	585.28292	1168.55129	0.67897	0.00039739	0.052605	3.0789E-05	0.73157	0.00042818	585.7846306236111	33.374	0.20771	33.374	33.296	33.504	0	-0.053088	0.00010831	NaN	100.09	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2517800			39474	2428	25237	25363							-0.026246503960464906
YTDQFSRNY	9	Unmodified	_YTDQFSRNY_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	HCT116MG_D190212_S1	1	597.2650756835938	2	597.264727	1192.5149	0.69717	0.0004164	-0.016774	-1.0018E-05	0.6804	0.00040638	597.2646488786655	31.206	0.31251	31.206	31.023	31.336	0					16	5	4	0	0	0	0.0019609	1	11474	11474		187.3	145.46	1	23325000			39475	1916	25238	25364	38010	38010					-0.07365527292745355
YTDQFSRNY	9	Unmodified	_YTDQFSRNY_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	HCT116MG_D190212_S2	2	597.265380859375	2	597.264727	1192.5149	0.8637	0.00051586	0.058533	3.496E-05	0.92223	0.00055082	597.2647188168808	31.37	0.31003	31.121	30.992	31.302	-0.24883					12	5	3	0	0	0	7.2446E-08	1	11575	11575		218.2	162.02	1	56714000			39476	1916	25238	25364	38011	38011					-0.07365527292745355
YTDQFSRNY	9	Unmodified	_YTDQFSRNY_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MSMS	HCT116MG_D190212_S3	3	597.2649536132812	2	597.264727	1192.5149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.622	1	31.352	30.852	31.852	-0.27028								0	0	0	9.9565E-05	1	11560	11560		136.39	71.157	1				39477	1916	25238	25364	38012	38012					-0.07365527292745355
YTDQFSRNY	9	Unmodified	_YTDQFSRNY_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	HCT116MG_D190212_S4	4	597.264892578125	2	597.264727	1192.5149	1.0045	0.00059995	0.06898	4.1199E-05	1.0735	0.00064115	597.2645213614134	31.68	0.41546	31.309	31.127	31.543	-0.37026					12	7	3	0	0	0	0.26031	1	11516	11516		34.932	13.185	1	6537000			39478	1916	25238	25364	38013	38013					-0.07365527292745355
YTDQLSRY	8	Unmodified	_YTDQLSRY_					0	0	0			REV__CIITA|p.G655Pfs*32|1|0.4|ENSG00000179583|chr16:10907447-10907448|-/CC|frameshift_variant	REV__CIITA|p.G655Pfs*32|1|0.4|ENSG00000179583|chr16:10907447-10907448|-/CC|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	523.2512817382812	2	523.251089	1044.48762	0.40291	0.00021083	-0.68879	-0.00036041	-0.28588	-0.00014959	523.250646705119	25.768	0.41826	25.768	25.509	25.927	0					15	7	3	0	0	0	0.53596	1	9284	9284		37.974	5.6685	1	6746200	+		39479	10192	25239	25365	38014	38014					-0.032840108331583906
YTDRETGKL	9	Unmodified	_YTDRETGKL_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S1	1	541.77783203125	2	541.77747	1081.54039	0.59518	0.00032246	-0.064745	-3.5077E-05	0.53044	0.00028738	541.7773831285115	21.146	0.42809	21.146	20.904	21.333	0					9	7	2	0	0	0	0.0093047	1	7428	7428		136.39	72.432	1	21148000			39480	1526	25240	25366	38015	38015					0.0028794722968541464
YTDRETGKL	9	Unmodified	_YTDRETGKL_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S2	2	541.7774047851562	2	541.77747	1081.54039	0.36972	0.0002003	0.088774	4.8096E-05	0.45849	0.0002484	541.7773608968582	21.786	0.31208	21.401	21.219	21.531	-0.38503					14	5	3	0	0	0	0.006003	1	7677	7677		151.48	75.719	1	66427000			39481	1526	25240	25366	38016	38016					0.0028794722968541464
YTDRETGKL	9	Unmodified	_YTDRETGKL_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S2	2	361.5204772949219	3	361.520739	1081.54039	-0.30133	-0.00010894	0.33238	0.00012016	0.031048	1.1225E-05	361.5207335413536	21.786	0.25982	21.401	21.219	21.479	-0.38503					7	4	2	0	0	0	0.25384	1	7691	7691		35.612	14.022	1	22268000			39482	1526	25240	25366	38017	38017					0.0028794722968541464
YTDRETGKL	9	Unmodified	_YTDRETGKL_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MSMS	HCT116MG_D190212_S3	3	541.7772216796875	2	541.77747	1081.54039	0.30704	0.00016635	-0.31514	-0.00017074	-0.008099	-4.3878E-06	541.776994295761	20.914	0.26022	20.949	20.766	21.027	0.034473					7	4	2	0	0	0	0.13248	1	7273	7273		55.235	26.153	1	3940800			39483	1526	25240	25366	38018	38018					0.0028794722968541464
YTDRETGKL	9	Unmodified	_YTDRETGKL_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MULTI-MATCH-MSMS	HCT116MG_D190212_S1	1		3	361.520739	1081.54039	-0.018389	-6.6479E-06	-0.32465	-0.00011737	-0.34304	-0.00012402	361.5206424866007	21.146	0.26752	21.146	21.012	21.279	0	-0.12733	-0.00034621	NaN	35.612	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4476100			39484	1526	25240	25366							0.0028794722968541464
YTDSSSILNY	10	Unmodified	_YTDSSSILNY_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	HCT116MG_D190212_S3	3	581.8190307617188	2	581.766768	1161.51898	0.55596	0.00032344	-0.2836	-0.00016499	0.27236	0.00015845	581.7665490342767	45.752	0.25965	45.442	45.305	45.564	-0.31094					7	4	2	0	0	0	0.69918	1	17165	17165		20.454	0	1	3047600			39485	2303	25241	25367	38019	38019					-0.05531482589708503
YTDSSYEEKKY	11	Unmodified	_YTDSSYEEKKY_					0	0	0		ENST00000476040.6_1_1:110210707-110212286:+|nuORF;nc|ENSG00000213366|P28161-2|GSTM2;ENSG00000213366|ENST00000241337|GSTM2;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000134184|P09488-2|GSTM1;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000134184|ENST00000309851|GSTM1;ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF;ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF	MSMS	HCT116MG_D190212_S1	1	706.8165283203125	2	706.814447	1411.61434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.433	1	21.433	20.933	21.933	0								0	0	0	0.18643	1	7539	7539		72.59	51.053	1				39486	6408;8227	25242	25368	38020	38020					-0.07500174189340214
YTDSSYEEKKY	11	Unmodified	_YTDSSYEEKKY_					0	0	0		ENST00000476040.6_1_1:110210707-110212286:+|nuORF;nc|ENSG00000213366|P28161-2|GSTM2;ENSG00000213366|ENST00000241337|GSTM2;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000134184|P09488-2|GSTM1;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000134184|ENST00000309851|GSTM1;ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF;ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	707.3162841796875	2	706.814447	1411.61434	0.79055	0.00055878	-0.27818	-0.00019662	0.51237	0.00036215	706.8142336076326	21.89	0.26048	21.505	21.323	21.583	-0.38503					11	4	4	0	0	0	2.81E-05	1	7739	7739		165.58	139.59	1	40482000			39487	6408;8227	25242	25368	38021	38021					-0.07500174189340214
YTDSSYEEKKY	11	Unmodified	_YTDSSYEEKKY_					0	0	0		ENST00000476040.6_1_1:110210707-110212286:+|nuORF;nc|ENSG00000213366|P28161-2|GSTM2;ENSG00000213366|ENST00000241337|GSTM2;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000134184|P09488-2|GSTM1;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000134184|ENST00000309851|GSTM1;ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF;ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S3	3	706.8148803710938	2	706.814447	1411.61434	0.63	0.00044529	0.74154	0.00052413	1.3715	0.00096942	706.8146063952026	21.332	0.31507	21.35	21.115	21.43	0.018446					7	5	2	0	0	0	0.5134	1	7453	7453		44.945	34.145	1	5467000			39488	6408;8227	25242	25368	38022	38022					-0.07500174189340214
YTDSSYEEKKY	11	Unmodified	_YTDSSYEEKKY_					0	0	0		ENST00000476040.6_1_1:110210707-110212286:+|nuORF;nc|ENSG00000213366|P28161-2|GSTM2;ENSG00000213366|ENST00000241337|GSTM2;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000568786.1_1_1:110210737-110211998:+|nuORF;ENST00000481656.2_1_1:110210707-110211256:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000464206.5_1_1:110210707-110211992:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000134184|P09488-2|GSTM1;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000134184|ENST00000309851|GSTM1;ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF;ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S4	4	706.3240966796875	2	706.814447	1411.61434	0.7823	0.00055294	0.032208	2.2765E-05	0.81451	0.00057571	707.3157387152329	21.644	0.20728	21.426	21.322	21.529	-0.21832					5	3	2	0	0	0	0.35292	1	7485	7485		20.415	14.683	1	1175400			39489	6408;8227	25242	25368	38023	38023					-0.07500174189340214
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MULTI-MSMS	HCT116MG_D190212_S1	1	1128.4385986328125	1	1128.43678	1127.4295	0.48266	0.00054465	0.22294	0.00025157	0.7056	0.00079622	1128.4373292483633	32.404	0.20842	32.404	32.274	32.482	0					6	3	2	0	0	0	0.013464	1	11964	11964		104.8	11.977	1	13125000			39490	4399;9513	25243	25369	38024	38024					-0.12911737269087098
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MULTI-MSMS	HCT116MG_D190212_S3	3	1128.4359130859375	1	1128.43678	1127.4295	0.64922	0.0007326	-0.020059	-2.2635E-05	0.62916	0.00070996	1128.4366085496742	32.819	0.31235	32.534	32.352	32.664	-0.28511					16	5	4	0	0	0	0.013464	1	12031	12031		104.8	0	1	37958000			39491	4399;9513	25243	25369	38025	38025					-0.12911737269087098
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MSMS	HCT116MG_D190212_S3	3	564.7222290039062	2	564.722027	1127.4295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.834	1	32.549	32.049	33.049	-0.28511								0	0	0	0.019198	1	12048	12048		92.822	0	1				39492	4399;9513	25243	25369	38026	38026					-0.12911737269087098
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MULTI-MSMS	HCT116MG_D190212_S4	4	1128.436767578125	1	1128.43678	1127.4295	0.58024	0.00065477	-0.094513	-0.00010665	0.48573	0.00054811	1128.4364091063171	32.821	0.35729	32.442	32.26	32.618	-0.37924					14	6	3	0	0	0	0.013464	1	11957	11957		104.8	0	1	13923000			39493	4399;9513	25243	25369	38027	38027					-0.12911737269087098
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MULTI-MSMS	HCT116MG_D190212_S4	4	564.7224731445312	2	564.722027	1127.4295	0.41875	0.00023648	0.28163	0.00015904	0.70038	0.00039552	564.7219066656536	32.821	0.25946	32.442	32.312	32.572	-0.37924					9	4	3	0	0	0	0.023611	1	11976	11976		92.822	18.399	1	6392800			39494	4399;9513	25243	25369	38028	38028					-0.12911737269087098
YTDTGLWGL	9	Unmodified	_YTDTGLWGL_					0	0	0		ENST00000443722.5_1_7:102939135-102952660:+|nuORF;ENST00000453466.1_1_7:102939135-102952715:+|nuORF;ENST00000444457.5_1_7:102938385-102969496:+|nuORF;ENSG00000105819|ENST00000249269|PMPCB	ENST00000443722.5_1_7:102939135-102952660:+|nuORF	ENST00000443722.5_1_7:102939135-102952660:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1025.49462890625	1	1025.49384	1024.48656	0.62987	0.00064592	0.57562	0.00059029	1.2055	0.0012362	1025.4940848664735	57.568	0.1543	57.393	57.315	57.469	-0.17494					4	2	2	0	0	0	0.065014	1	22257	22257		67.344	18.998	1	27294000			39495	2037	25244	25370	38029	38029					-0.024702252020460946
YTDTYTEAY	9	Unmodified	_YTDTYTEAY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MULTI-MSMS	HCT116MG_D190212_S3	3	1126.4573974609375	1	1126.45751	1125.45024	0.26843	0.00030237	0.27949	0.00031483	0.54791	0.0006172	1126.4575925204283	34.537	0.25936	34.24	34.077	34.336	-0.29707					7	4	2	0	0	0	0.026974	1	12734	12734		89.427	66.691	1	6499500			39496	4399;9513	25245	25371	38030	38030					-0.10747146889411852
YTDTYTEAY	9	Unmodified	_YTDTYTEAY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON	nc|ENSG00000159140|P18583-10|SON	MULTI-MSMS	HCT116MG_D190212_S4	4	1126.4581298828125	1	1126.45751	1125.45024	0.40715	0.00045864	0.21969	0.00024747	0.62684	0.00070611	1126.4579382003164	34.548	0.20157	34.163	34.035	34.237	-0.38558					5	3	2	0	0	0	0.058138	1	12645	12645		70.716	47.979	1	4177400			39497	4399;9513	25245	25371	38031	38031					-0.10747146889411852
YTDVPFHNQY	10	Unmodified	_YTDVPFHNQY_					0	0	0		ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	MULTI-SECPEP	HCT116MG_D190212_S1	1	642.7910766601562	2	642.288202	1282.56185	0.86376	0.00055478	0.52531	0.0003374	1.3891	0.00089218	642.2883907526518	37.223	0.25859	37.223	37.042	37.301	0					6	4	2	0	0	0	0.18749	1	13931	13931		69.105	52.956	1	15637000			39498	1980	25246	25372	38032	38032					-0.06812667741610312
YTDVPFHNQY	10	Unmodified	_YTDVPFHNQY_					0	0	0		ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	MULTI-MSMS	HCT116MG_D190212_S2	2	642.2886352539062	2	642.288202	1282.56185	0.45379	0.00029146	0.15655	0.00010055	0.61034	0.00039201	642.2882299358387	37.246	0.41211	37.143	36.923	37.335	-0.10318					22	7	4	0	0	0	0.005658	1	13942	13942		165.72	109.54	1	112990000			39499	1980	25246	25372	38033	38033					-0.06812667741610312
YTDVPFHNQY	10	Unmodified	_YTDVPFHNQY_					0	0	0		ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	MULTI-MSMS	HCT116MG_D190212_S3	3	642.28857421875	2	642.288202	1282.56185	0.63575	0.00040834	0.141	9.0561E-05	0.77675	0.0004989	642.2882649998593	37.41	0.3787	37.109	36.925	37.304	-0.30137					17	7	4	0	0	0	1.2436E-06	1	13858	13858		208.15	142.91	1	50329000			39500	1980	25246	25372	38034	38034					-0.06812667741610312
YTDVPFHNQY	10	Unmodified	_YTDVPFHNQY_					0	0	0		ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	MULTI-MSMS	HCT116MG_D190212_S4	4	642.2889404296875	2	642.288202	1282.56185	0.34537	0.00022182	0.46926	0.0003014	0.81463	0.00052323	642.2882692122271	37.535	0.23891	37.151	36.977	37.216	-0.3839					9	4	3	0	0	0	0.0092896	1	13779	13779		152.89	87.651	1	16646000			39501	1980	25246	25372	38035	38035					-0.06812667741610312
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	HCT116MG_D190212_S1	1	502.7379455566406	2	502.737814	1003.46108	0.43258	0.00021747	0.14801	7.4409E-05	0.58059	0.00029188	502.7378214722261	25.797	0.52254	25.797	25.614	26.136	0					25	9	4	0	0	0	0.02101	1	9295	9295		152.41	59.921	1	106420000			39502	6415	25247	25373	38036	38036					-0.04051699724482205
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	HCT116MG_D190212_S2	2	502.7380065917969	2	502.737814	1003.46108	0.64162	0.00032256	-0.072614	-3.6506E-05	0.569	0.00028606	502.73770498897045	26.205	0.62211	25.844	25.662	26.284	-0.36164					29	11	4	0	0	0	0.02101	1	9452	9452		152.41	59.921	1	431780000			39503	6415	25247	25373	38037	38037					-0.04051699724482205
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	HCT116MG_D190212_S2	2	1004.4689331054688	1	1004.46835	1003.46108	0.76208	0.00076549	0.18217	0.00018298	0.94425	0.00094847	1004.4682605272467	26.207	0.25925	25.845	25.662	25.921	-0.36164					13	4	4	0	0	0	0.024528	1	9472	9472		198.25	69.885	1	70031000			39504	6415	25247	25373	38038	38038					-0.04051699724482205
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	HCT116MG_D190212_S3	3	502.7377624511719	2	502.737814	1003.46108	0.52278	0.00026282	-0.078113	-3.927E-05	0.44466	0.00022355	502.7377059340568	26.013	0.98991	25.885	25.286	26.276	-0.12795					38	18	4	0	0	0	0.02101	1	9299	9299		152.41	59.921	1	195420000			39505	6415	25247	25373	38039	38039					-0.04051699724482205
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	HCT116MG_D190212_S3	3	1004.468505859375	1	1004.46835	1003.46108	0.71007	0.00071324	-0.25246	-0.00025359	0.4576	0.00045965	1004.4680951559797	26.013	0.26086	25.885	25.755	26.016	-0.12795					9	4	3	0	0	0	0.024528	1	9320	9320		198.25	69.885	1	12660000			39506	6415	25247	25373	38040	38040					-0.04051699724482205
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	HCT116MG_D190212_S4	4	502.73785400390625	2	502.737814	1003.46108	0.26837	0.00013492	0.2573	0.00012935	0.52567	0.00026427	502.73783255616183	26.248	0.57238	25.947	25.661	26.234	-0.30087					15	10	2	0	0	0	0.054052	1	9324	9324		118.89	26.403	1	45626000			39507	6415	25247	25373	38041	38041					-0.04051699724482205
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	ENSG00000213593|ENST00000278422|TMX2	ENSG00000213593|ENST00000278422|TMX2	MULTI-MSMS	HCT116MG_D190212_S4	4	1004.468505859375	1	1004.46835	1003.46108	0.55501	0.00055749	-0.09123	-9.1637E-05	0.46378	0.00046585	1004.4685026528533	26.248	0.20828	25.947	25.817	26.026	-0.30087					5	3	2	0	0	0	0.0065428	1	9353	9353		183.04	79.291	1	3404600			39508	6415	25247	25373	38042	38042					-0.04051699724482205
YTDYGGLIFN	10	Unmodified	_YTDYGGLIFN_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	HCT116MG_D190212_S2	2	1162.5408935546875	1	1162.54152	1161.53424	0.473	0.00054988	-0.26616	-0.00030942	0.20684	0.00024047	1162.5406729987196	54.773	0.25684	54.585	54.457	54.714	-0.18797					10	4	3	0	0	0	0.095673	1	21120	21120		74.929	38.423	1	75913000			39509	6255	25248	25374	38043	38043					-0.04006571001832526
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S2	2	1048.411865234375	1	1048.41056	1047.40329	0.70408	0.00073816	0.11531	0.00012089	0.81939	0.00085905	1048.410548320426	27.723	0.30789	27.381	27.243	27.551	-0.34201					10	5	3	0	0	0	0.013464	1	10106	10106		104.8	53.944	1	26540000			39510	2190	25249	25375	38044	38044					-0.11852006440562945
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S3	3	1048.410888671875	1	1048.41056	1047.40329	0.72165	0.00075659	-0.15582	-0.00016337	0.56583	0.00059322	1048.410328099742	27.769	0.36389	27.581	27.413	27.777	-0.18847					13	6	3	0	0	0	0.013464	1	10024	10024		104.8	60.392	1	14138000			39511	2190	25249	25375	38045	38045					-0.11852006440562945
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S3	3	524.7086181640625	2	524.708919	1047.40329	0.48899	0.00025658	-0.43525	-0.00022838	0.053746	2.8201E-05	524.708613347564	27.783	0.25989	27.595	27.465	27.725	-0.18847					7	4	2	0	0	0	0.013464	1	10041	10041		104.8	60.392	1	7922700			39512	2190	25249	25375	38046	38046					-0.11852006440562945
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MSMS	HCT116MG_D190212_S4	4	1048.4110107421875	1	1048.41056	1047.40329	0.61926	0.00064924	-0.31448	-0.00032971	0.30478	0.00031953	1048.4102792713343	27.849	0.20775	27.528	27.398	27.606	-0.32157					6	3	2	0	0	0	0.043314	1	10002	10002		77.984	45.867	1	2721100			39513	2190	25249	25375	38047	38047					-0.11852006440562945
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	nc|ENSG00000108946|P10644-2|PRKAR1A	MULTI-MATCH	HCT116MG_D190212_S4	4		2	524.708919	1047.40329	0.40102	0.00021042	0.287	0.00015059	0.68802	0.00036101	524.7090734176032	27.849	0.20775	27.528	27.398	27.606	-0.32157	-0.033455	0.00063474	NaN	104.8	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2364200			39514	2190	25249	25375							-0.11852006440562945
YTEEQHQSK	9	Unmodified	_YTEEQHQSK_					0	0	0			REV__nc|ENSG00000110693|P35712-4|SOX6	REV__nc|ENSG00000110693|P35712-4|SOX6	MSMS	HCT116MG_D190212_S4	4	575.2642822265625	2	575.262185	1148.50982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.322	1	47.954	47.454	48.454	-0.36728								0	0	0	0.768	1	17893	17893		7.9102	1.187	1		+		39515	17107	25250	25376	38048	38048					-0.05849831155364882
YTEGREIY	8	Unmodified	_YTEGREIY_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MSMS	HCT116MG_D190212_S1	1	515.7459106445312	2	515.745639	1029.47673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.949	1	35.949	35.449	36.449	0								0	0	0	0.67883	1	13389	13389		32.305	3.8186	1		+		39516	12884	25251	25377	38049	38049					-0.03683413207409103
YTEKDKQAY	9	Unmodified	_YTEKDKQAY_					0	0	0		ENST00000495446.1_1_7:48146453-48147951:+|nuORF;ENST00000395560.7_1_7:48134363-48147951:+|nuORF;ENSG00000183696|ENST00000395564|UPP1	ENST00000495446.1_1_7:48146453-48147951:+|nuORF	ENST00000495446.1_1_7:48146453-48147951:+|nuORF	MULTI-SECPEP	HCT116MG_D190212_S2	2	573.243408203125	2	573.277303	1144.54005	0.36582	0.00020971	1.9072	0.0010934	2.273	0.0013031	573.277894732831	17.667	0.31321	17.31	17.075	17.388	-0.35647					6	5	2	0	0	0	0.1896	1	6041	6041		34.222	14.965	1	3679400			39517	5735	25252	25378	38050	38050					-0.026434724901946538
YTEKNGQLIY	10	Unmodified	_YTEKNGQLIY_					0	0	0		nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000288674|P49810-2|PSEN2	nc|ENSG00000288674|P49810-2|PSEN2	MSMS	HCT116MG_D190212_S3	3	614.8142700195312	2	614.814053	1227.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.955	1	34.658	34.158	35.158	-0.29707								0	0	0	0.452	1	12885	12885		49.527	13.4	1				39518	3836	25253	25379	38051	38051					0.008850759523056695
YTEKQIGY	8	Unmodified	_YTEKQIGY_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;AP2A2|p.P669Lfs*67|4|0.29|ENSG00000183020|chr11:1000475-1000475|C/-|frameshift_variant;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;AP2A2|p.Q403Tfs*14|1|0.28|ENSG00000183020|chr11:988621-988622|-/C|frameshift_variant;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;AP2A1|p.Q851Rfs*5|1|0.43|ENSG00000196961|chr19:49805672-49805672|C/-|frameshift_variant;AP2A1|p.K165Sfs*69|1|0.29|ENSG00000196961|chr19:49791953-49791953|C/-|frameshift_variant	nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	HCT116MG_D190212_S1	1	501.2508850097656	2	501.250557	1000.48656	0.41108	0.00020605	0.67319	0.00033744	1.0843	0.00054349	501.2509515593103	27.841	0.20831	27.841	27.696	27.904	0					5	3	2	0	0	0	0.70219	1	10140	10140		22.736	5.794	1	10691000			39519	6109;149	25254	25380	38052	38052					-0.013662252020480992
YTELLAQVY	9	Unmodified	_YTELLAQVY_					0	0	0		ENST00000487525.5_1_17:56772519-56783250:+|nuORF;ENST00000487921.5_1_17:56769962-56783250:+|nuORF;ENST00000475762.5_1_17:56772326-56801433:+|nuORF;ENSG00000108384|ENST00000337432|RAD51C	ENST00000487525.5_1_17:56772519-56783250:+|nuORF	ENST00000487525.5_1_17:56772519-56783250:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	1099.5682373046875	1	1099.567	1098.55973	0.54533	0.00059963	0.18078	0.00019878	0.72611	0.00079841	1099.5667197264345	53.559	0.25721	53.37	53.223	53.48	-0.1894					9	4	3	0	0	0	0.016134	1	20620	20620		100.37	32.291	1	13192000			39520	2156	25255	25381	38053	38053					0.014389035205795153
YTELLAQVY	9	Unmodified	_YTELLAQVY_					0	0	0		ENST00000487525.5_1_17:56772519-56783250:+|nuORF;ENST00000487921.5_1_17:56769962-56783250:+|nuORF;ENST00000475762.5_1_17:56772326-56801433:+|nuORF;ENSG00000108384|ENST00000337432|RAD51C	ENST00000487525.5_1_17:56772519-56783250:+|nuORF	ENST00000487525.5_1_17:56772519-56783250:+|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	550.2874145507812	2	550.28714	1098.55973	0.26623	0.0001465	0.46227	0.00025438	0.72851	0.00040089	550.2874071827525	53.562	0.25721	53.372	53.223	53.48	-0.1894					7	4	2	0	0	0	0.1037	1	20628	20628		57.471	30.588	1	9010600			39521	2156	25255	25381	38054	38054					0.014389035205795153
YTERAVFRY	9	Unmodified	_YTERAVFRY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	HCT116MG_D190212_S2	2	602.8089599609375	2	602.809105	1203.60366	0.7922	0.00047754	-0.90928	-0.00054812	-0.11708	-7.0576E-05	602.8085533102408	34.945	0.2588	34.787	34.657	34.916	-0.15834					9	4	3	0	0	0	0.012531	1	13027	13027		107.1	75.062	1	30197000			39522	1919	25256	25382	38055	38055					0.009999327375680878
YTERAVFRY	9	Unmodified	_YTERAVFRY_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	HCT116MG_D190212_S2	2	402.69989013671875	3	402.208495	1203.60366	0.033804	1.3596E-05	0.38193	0.00015362	0.41573	0.00016721	402.20861981622835	34.93	0.15562	34.771	34.657	34.813	-0.15834					6	2	3	0	0	0	0.14768	1	13019	13019		28.234	20.625	1	10961000			39523	1919	25256	25382	38056	38056					0.009999327375680878
YTERDASGMLY	11	Unmodified	_YTERDASGMLY_					0	0	0		nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1;nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	MULTI-MSMS	HCT116MG_D190212_S2	2	653.2926025390625	2	653.292627	1304.5707	0.35432	0.00023148	0.1122	7.3302E-05	0.46653	0.00030478	653.2925387659319	37.924	0.20612	37.831	37.702	37.908	-0.09301					5	3	2	0	0	0	0.3975	1	14258	14258		55.249	32.512	1	24821000			39524	3225	25257	25383	38057	38057					-0.06940062167427641
YTERDASGMLY	11	Unmodified	_YTERDASGMLY_					0	0	0		nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1;nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	MULTI-MSMS	HCT116MG_D190212_S3	3	653.2929077148438	2	653.292627	1304.5707	0.69974	0.00045713	0.11704	7.6463E-05	0.81678	0.0005336	653.2926104181574	38.15	0.30373	37.848	37.633	37.937	-0.30137					10	6	3	0	0	0	0.57897	1	14150	14150		37.771	20.658	1	10131000			39525	3225	25257	25383	38058	38058					-0.06940062167427641
YTERRQPLY	9	Unmodified	_YTERRQPLY_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-MSMS	HCT116MG_D190212_S2	2	613.3201904296875	2	613.319837	1224.62512	0.59495	0.00036489	-0.082069	-5.0334E-05	0.51288	0.00031456	613.3198935870716	26.218	0.20678	25.856	25.766	25.972	-0.36164					5	3	2	0	0	0	0.1754	1	9508	9508		43.858	22.321	1	6445300			39526	2402	25258	25384	38059	38059					0.021793177662857488
YTETEPYHNY	10	Unmodified	_YTETEPYHNY_					0	0	0		ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant;ZC3H18|p.R680Qfs*14|1|0.38|ENSG00000158545|chr16:88624732-88624733|-/C|frameshift_variant;ZC3H18|p.Q804Sfs*15|1|0.32|ENSG00000158545|chr16:88628051-88628051|C/-|frameshift_variant;ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF	ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S1	1	658.7755737304688	2	658.775125	1315.5357	0.86747	0.00057146	0.41029	0.00027029	1.2778	0.00084175	658.7751498192604	28.139	0.312	28.139	27.956	28.268	0					12	5	3	0	0	0	0.0015699	1	10226	10226		176.43	114.83	1	19652000			39527	4378	25259	25385	38060	38060					-0.1094498170375573
YTETEPYHNY	10	Unmodified	_YTETEPYHNY_					0	0	0		ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant;ZC3H18|p.R680Qfs*14|1|0.38|ENSG00000158545|chr16:88624732-88624733|-/C|frameshift_variant;ZC3H18|p.Q804Sfs*15|1|0.32|ENSG00000158545|chr16:88628051-88628051|C/-|frameshift_variant;ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF	ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	658.7764282226562	2	658.775125	1315.5357	0.49238	0.00032437	0.38667	0.00025473	0.87905	0.0005791	658.7754735225607	28.458	0.41222	28.128	27.926	28.338	-0.32987					15	7	3	0	0	0	0.010123	1	10378	10378		148.27	96.853	1	36689000			39528	4378	25259	25385	38061	38061					-0.1094498170375573
YTETEPYHNY	10	Unmodified	_YTETEPYHNY_					0	0	0		ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant;ZC3H18|p.R680Qfs*14|1|0.38|ENSG00000158545|chr16:88624732-88624733|-/C|frameshift_variant;ZC3H18|p.Q804Sfs*15|1|0.32|ENSG00000158545|chr16:88628051-88628051|C/-|frameshift_variant;ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF	ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	ZC3H18|p.R680Gfs*5|4|0.4|ENSG00000158545|chr16:88624733-88624733|C/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S3	3	658.7764282226562	2	658.775125	1315.5357	0.80492	0.00053026	-0.0062229	-4.0995E-06	0.7987	0.00052616	658.7751706196418	28.5	0.31271	28.294	28.125	28.437	-0.20593					7	5	2	0	0	0	0.049927	1	10336	10336		87.258	67.896	1	5622200			39529	4378	25259	25385	38062	38062					-0.1094498170375573
YTETVNHHY	9	Unmodified	_YTETVNHHY_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	HCT116MG_D190212_S1	1	582.259765625	2	582.259445	1162.50434	0.445	0.0002591	0.38078	0.00022171	0.82578	0.00048082	582.2598402819817	19.626	0.20877	19.626	19.495	19.704	0					8	3	3	0	0	0	0.041798	1	6838	6838		78.728	48.503	1	9182500			39530	2451	25260	25386	38063	38063					-0.07041509947180202
YTETVNHHY	9	Unmodified	_YTETVNHHY_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	HCT116MG_D190212_S2	2	582.2599487304688	2	582.259445	1162.50434	0.39538	0.00023021	0.28411	0.00016542	0.67949	0.00039564	582.2595281943954	20.271	0.2088	19.891	19.761	19.969	-0.37949					10	3	4	0	0	0	0.0035731	1	7080	7080		174.73	126.98	1	33920000			39531	2451	25260	25386	38064	38064					-0.07041509947180202
YTFLIILLL	9	Unmodified	_YTFLIILLL_					0	0	0		tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1	tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1	tr|U7T6L6|U7T6L6_FUSNUAI-2EfamilytransporterOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00289PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	554.854736328125	2	554.854461	1107.69437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.365	1	11.365	10.865	11.865	0								0	0	0	0.77025	1	3570	3570		0	0	1				39532	18647	25261	25387	38065	38065					0.1448300873316839
YTGEKPYV	8	Unmodified	_YTGEKPYV_					0	0	0		PRDM9|p.H854Y|1|0.43|ENSG00000164256|chr5:23527648-23527648|C/T|missense_variant	PRDM9|p.H854Y|1|0.43|ENSG00000164256|chr5:23527648-23527648|C/T|missense_variant	PRDM9|p.H854Y|1|0.43|ENSG00000164256|chr5:23527648-23527648|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	478.7378234863281	2	478.739825	955.465098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.556	1	26.556	26.056	27.056	0								0	0	0	0.8837	1	9600	9600		15.768	1.1865	1				39533	9777	25262	25388	38066	38066					-0.014416102307677647
YTGTPDWLY	9	Unmodified	_YTGTPDWLY_					0	0	0		ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENST00000471817.2_1_20:60866739-60868940:+|nuORF	ENSG00000130703|ENST00000313733|OSBPL2	ENSG00000130703|ENST00000313733|OSBPL2	MULTI-MSMS	HCT116MG_D190212_S2	2	1115.50537109375	1	1115.5044	1114.49713	0.53271	0.00059424	0.31366	0.00034989	0.84637	0.00094413	1115.5044040727228	55.232	0.25372	55.044	54.867	55.121	-0.18797					11	4	3	0	0	0	0.0082751	1	21295	21295		117.6	69.85	1	52308000			39534	3096	25263	25389	38067	38067					-0.05554242547600552
YTGTPDWLY	9	Unmodified	_YTGTPDWLY_					0	0	0		ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENST00000471817.2_1_20:60866739-60868940:+|nuORF	ENSG00000130703|ENST00000313733|OSBPL2	ENSG00000130703|ENST00000313733|OSBPL2	MULTI-MATCH	HCT116MG_D190212_S3	3		1	1115.5044	1114.49713	0.41958	0.00046804	0.21938	0.00024472	0.63896	0.00071277	1115.5050674848133	55.318	0.26127	55.026	54.927	55.188	-0.29181	-0.0091309	-7.7364E-05	NaN	117.6	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2514400			39535	3096	25263	25389							-0.05554242547600552
YTHGAAEAEP	10	Unmodified	_YTHGAAEAEP_					0	0	0			REV__ENSG00000166592|ENST00000299759|RRAD	REV__ENSG00000166592|ENST00000299759|RRAD	MULTI-SECPEP	HCT116MG_D190212_S1	1	522.732177734375	2	523.232896	1044.45124	0.58546	0.00030633	1.0581	0.00055361	1.6435	0.00085995	523.2334935547093	29.138	0.20894	29.138	28.955	29.164	0					5	3	2	0	0	0	0.30738	1	10641	10641		9.3831	0	1	5999200	+		39536	13114	25264	25390	38068	38068					-0.06920887729870628
YTHLIELF	8	Unmodified	_YTHLIELF_					0	0	0			REV__ENSG00000169375|ENST00000394947|SIN3A	REV__ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	HCT116MG_D190212_S3	3	518.7801513671875	2	518.279118	1034.54368	0.35873	0.00018592	-0.55983	-0.00029015	-0.20109	-0.00010422	518.2789506787333	37.781	0.20406	37.479	37.456	37.66	-0.30137					21	15	2	0	0	0	0.66848	1	13991	13991		26.341	3.1929	1	29252000	+		39537	13240	25265	25391	38069	38069					0.027792420743026014
YTHLIELF	8	Unmodified	_YTHLIELF_					0	0	0			REV__ENSG00000169375|ENST00000394947|SIN3A	REV__ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	HCT116MG_D190212_S3	3	518.7801513671875	2	518.279118	1034.54368	0.35873	0.00018592	-0.55983	-0.00029015	-0.20109	-0.00010422	518.2789506787333	37.781	0.20406	37.479	37.456	37.66	-0.30137					21	15	2	0	0	0	0.28275	1	13991	13991		26.341	3.1929	1	29252000	+		39538	13240	25265	25391	38070	38070					0.027792420743026014
YTITGGIP	8	Unmodified	_YTITGGIP_					0	0	0			REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MSMS	HCT116MG_D190212_S4	4	411.22235107421875	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.534	1	39.154	38.654	39.654	-0.38055								0	0	0	0.8837	1	14529	14529		6.3541	0.59368	1		+		39539	10743	25266	25392	38071	38071					0.01567022086101133
YTITGGIP	8	Unmodified	_YTITGGIP_					0	0	0			REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MSMS	HCT116MG_D190212_S4	4	411.2228088378906	2	411.223811	820.433069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.733	1	42.358	41.858	42.858	-0.37493								0	0	0	0.8837	1	15717	15717		2.8892	0	1		+		39540	10743	25266	25392	38072	38072					0.01567022086101133
YTIYMVSKRA	10	Unmodified	_YTIYMVSKRA_					0	0	0			REV__ENST00000398391.6_1_17:53077004-53077139:+|nuORF	REV__ENST00000398391.6_1_17:53077004-53077139:+|nuORF	MSMS	HCT116MG_D190212_S2	2	411.5241394042969	3	411.221636	1230.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.638	1	30.369	29.869	30.869	-0.26935								0	0	0	0.94107	1	11273	11273		3.5871	0	1		+		39541	15374	25267	25393	38073	38073					0.036983166967957004
YTKFGGEG	8	Unmodified	_YTKFGGEG_					0	0	0		ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	MULTI-SECPEP	HCT116MG_D190212_S2	2	429.70306396484375	2	429.703243	857.391933	-0.047951	-2.0605E-05	1.3136	0.00056445	1.2656	0.00054385	429.70299191724615	32.578	0.36458	32.353	32.104	32.468	-0.2246					10	6	2	0	0	0	0.29044	1	12086	12086		25.399	15.325	1	12967000			39542	3361	25268	25394	38074	38074					-0.04246738953361273
YTKRRLRKVFL	11	Unmodified	_YTKRRLRKVFL_					0	0	0			REV__ENSG00000196460|ENST00000428343|RFX8	REV__ENSG00000196460|ENST00000428343|RFX8	MSMS	HCT116MG_D190212_S3	3	740.4639282226562	2	740.46717	1478.91979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.709	1	52.403	51.903	52.903	-0.30639								0	0	0	0.96149	1	19932	19932		0.30703	0.30703	1		+		39543	14026	25269	25395	38075	38075					0.1994835097586929
YTKRRLRKVFL	11	Unmodified	_YTKRRLRKVFL_					0	0	0			REV__ENSG00000196460|ENST00000428343|RFX8	REV__ENSG00000196460|ENST00000428343|RFX8	MSMS	HCT116MG_D190212_S3	3	740.4639282226562	2	740.46717	1478.91979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.931	1	53.632	53.132	54.132	-0.29946								0	0	0	0.96149	1	20424	20424		0.30703	0.30703	1		+		39544	14026	25269	25395	38076	38076					0.1994835097586929
YTKRRLRKVFL	11	Unmodified	_YTKRRLRKVFL_					0	0	0			REV__ENSG00000196460|ENST00000428343|RFX8	REV__ENSG00000196460|ENST00000428343|RFX8	MSMS	HCT116MG_D190212_S3	3	740.464599609375	2	740.46717	1478.91979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.171	1	53.871	53.371	54.371	-0.29946								0	0	0	0.95954	1	20520	20520		1.3295	1.0225	1		+		39545	14026	25269	25395	38077	38077					0.1994835097586929
YTKRRLRKVFL	11	Unmodified	_YTKRRLRKVFL_					0	0	0			REV__ENSG00000196460|ENST00000428343|RFX8	REV__ENSG00000196460|ENST00000428343|RFX8	MSMS	HCT116MG_D190212_S4	4	740.4644775390625	2	740.46717	1478.91979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.938	1	52.597	52.097	53.097	-0.34023								0	0	0	0.95954	1	19749	19749		1.3295	0.13619	1		+		39546	14026	25269	25395	38078	38078					0.1994835097586929
YTKRRLRKVFL	11	Unmodified	_YTKRRLRKVFL_					0	0	0			REV__ENSG00000196460|ENST00000428343|RFX8	REV__ENSG00000196460|ENST00000428343|RFX8	MSMS	HCT116MG_D190212_S4	4	740.46533203125	2	740.46717	1478.91979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.172	1	53.843	53.343	54.343	-0.32923								0	0	0	0.95954	1	20248	20248		1.3295	1.3295	1		+		39547	14026	25269	25395	38079	38079					0.1994835097586929
YTLQGVPTAPP	11	Unmodified	_YTLQGVPTAPP_					0	0	0		SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant;SDK1|p.V1762Wfs*2|1|0.28|ENSG00000146555|chr7:4208168-4208168|G/-|frameshift_variant;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant	SDK1|p.Q1487Pfs*37|1|0.27|ENSG00000146555|chr7:4149293-4149294|-/C|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	381.8727722167969	3	381.873001	1142.59717	-0.19531	-7.4585E-05	-0.69504	-0.00026542	-0.89035	-0.00034	381.87282179498237	32.563	0.26063	32.333	32.202	32.463	-0.23009					7	4	2	0	0	0	0.72004	1	12088	12088		8.2864	0.34103	1	15714000			39548	3953	25270	25396	38080	38080					0.03157994786170093
YTLSALPIRV	10	Unmodified	_YTLSALPIRV_					0	0	0			REV__nc|ENSG00000166436|O15016-3|TRIM66	REV__nc|ENSG00000166436|O15016-3|TRIM66	MSMS	HCT116MG_D190212_S1	1	378.2276611328125	3	378.229008	1131.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.008	1	53.008	52.508	53.508	0								0	0	0	0.96263	1	20290	20290		1.9064	0.69154	1		+		39549	15951	25271	25397	38081	38081					0.10462864436817654
YTMKEVLFY	9	Unmodified	_YTMKEVLFY_					0	0	0		MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF;nc|ENSG00000135679|Q00987-7|MDM2	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MDM2|p.L305Ffs*16|1|0.09|ENSG00000135679|chr12:68836745-68836746|-/CAATCAGA|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	597.2996215820312	2	597.299193	1192.58383	0.6067	0.00036238	-0.052108	-3.1124E-05	0.55459	0.00033126	597.2989487092095	54.006	0.25729	53.816	53.687	53.945	-0.1894					10	4	3	0	0	0	0.051033	1	20806	20806		74.2	32.105	1	42312000			39550	3368	25272	25398	38082	38082					-0.004755793174126666
YTNKEMLKY	9	Unmodified	_YTNKEMLKY_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2;YTHDC2|p.N676Tfs*9|1|0.46|ENSG00000047188|chr5:113553824-113553824|A/-|frameshift_variant	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	HCT116MG_D190212_S3	3	595.2998657226562	2	595.299724	1188.5849	0.6961	0.00041439	-0.58158	-0.00034621	0.11453	6.8177E-05	595.2992775091363	30.085	0.26205	29.835	29.755	30.017	-0.24946					8	4	3	0	0	0	0.018739	1	10976	10976		97.741	61.614	1	5924000			39551	1023	25273	25399	38083	38083					-0.0018536494851559837
YTNKEMLKY	9	Unmodified	_YTNKEMLKY_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2;YTHDC2|p.N676Tfs*9|1|0.46|ENSG00000047188|chr5:113553824-113553824|A/-|frameshift_variant	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MATCH	HCT116MG_D190212_S2	2		2	595.299724	1188.5849	0.35677	0.00021238	-0.28961	-0.00017241	0.067152	3.9976E-05	595.2994348215382	30.029	0.25808	29.744	29.615	29.873	-0.28453	-0.045555	0.00019739	NaN	97.741	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36672000			39552	1023	25273	25399							-0.0018536494851559837
YTQQATQSY	9	Unmodified	_YTQQATQSY_					0	0	0		nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS;ENST00000487045.6_1_16:31191511-31194161:+|nuORF;FUS|p.P152Lfs*33|1|0.31|ENSG00000089280|chr16:31184324-31184324|C/-|frameshift_variant;ENST00000487509.6_1_16:31191511-31196501:+|nuORF	nc|ENSG00000089280|P35637-2|FUS	nc|ENSG00000089280|P35637-2|FUS	MSMS	HCT116MG_D190212_S1	1	545.2463989257812	2	545.246003	1088.47745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.099	1	23.099	22.599	23.599	0								0	0	0	0.49326	1	8210	8210		29.082	9.8246	1				39553	1526	25274	25400	38084	38084					-0.06324618558369366
YTRYEKIGQ	9	Unmodified	_YTRYEKIGQ_					0	0	0		PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2;PAK2|p.S330Hfs*6|1|0.39|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;PAK2|p.S371Vfs*67|1|0.31|ENSG00000180370|chr3:196818111-196818111|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	PAK2|p.R488Gfs*13|1|0.32|ENSG00000180370|chr3:196827302-196827302|A/-|frameshift_variant	MULTI-SECPEP	HCT116MG_D190212_S3	3	579.7750244140625	2	579.301113	1156.58767	0.31635	0.00018326	-3.3569	-0.0019447	-3.0406	-0.0017614	579.2992728898711	20.635	0.26031	20.669	20.454	20.714	0.034473					5	4	2	0	0	0	0.2493	1	7116	7116		8.1555	4.2111	1	2260800			39554	5597	25275	25401	38085	38085					0.015642265006590605
YTSDYFISY	9	Unmodified	_YTSDYFISY_					0	0	0		nc|ENSG00000134954|P14921-5|ETS1;ETS1|p.N203Rfs*56|1|0.07|ENSG00000134954|chr11:128484945-128484946|-/ATTTCTTC|frameshift_variant;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1	nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-5|ETS1	MULTI-SECPEP	HCT116MG_D190212_S2	2	1158.5015869140625	1	1158.49898	1157.49171	0.55517	0.00064316	0.90482	0.0010482	1.46	0.0016914	1158.5002391365422	52.642	0.3107	52.454	52.295	52.606	-0.18726					11	5	3	0	0	0	0.10596	1	20276	20276		60.39	24.345	1	7804200			39555	3317	25276	25402	38086	38086					-0.08073966130086774
YTSGPGSRIS	10	Unmodified	_YTSGPGSRIS_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	512.7562255859375	2	512.756538	1023.49852	0.4463	0.00022884	-0.70428	-0.00036112	-0.25798	-0.00013228	512.7561425290811	21.199	0.32097	21.199	21.012	21.333	0					7	5	2	0	0	0	0.42108	1	7474	7474		40.725	10.088	1	2810800		+	39556	558	25277	25403	38087	38087					-0.012286084588367885
YTSGPGSRISS	11	Unmodified	_YTSGPGSRISS_					0	0	0		nc|ENSG00000170421|P05787-2|KRT8;CON__P05787;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	nc|ENSG00000170421|P05787-2|KRT8	nc|ENSG00000170421|P05787-2|KRT8	MULTI-MSMS	HCT116MG_D190212_S1	1	556.272705078125	2	556.272552	1110.53055	0.51384	0.00028583	-0.5336	-0.00029683	-0.019762	-1.0993E-05	556.2723549796426	21.204	0.48074	21.204	20.904	21.385	0					13	8	3	0	0	0	0.33394	1	7448	7448		60.899	20.95	1	6643000		+	39557	558	25278	25404	38088	38088					-0.02029240775686958
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	HCT116MG_D190212_S1	1	522.753662109375	2	522.753464	1043.49238	0.38695	0.00020228	0.20486	0.00010709	0.59181	0.00030937	522.7536239927114	22.274	0.41775	22.274	22.063	22.481	0					12	7	2	0	0	0	0.026999	2	7864	7864;7877		89.401	39.468	1	4858900			39558	1138	25279	25405	38089;38090	38089					-0.027631266903881624
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	HCT116MG_D190212_S2	2	522.7536010742188	2	522.753464	1043.49238	0.40306	0.0002107	-0.025705	-1.3437E-05	0.37735	0.00019726	522.7533237936552	22.715	0.31155	22.329	22.154	22.466	-0.3852					13	5	3	0	0	0	0.0096523	1	8067	8067		114.2	55.523	1	23272000			39559	1138	25279	25405	38091	38091					-0.027631266903881624
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MSMS	HCT116MG_D190212_S3	3	522.7534790039062	2	522.753464	1043.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.245	1	22.246	21.746	22.746	0.00074577								0	0	0	0.014652	1	7794	7794		99.755	41.076	1				39560	1138	25279	25405	38092	38092					-0.027631266903881624
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.A1003Lfs*3|1|0.21|ENSG00000064313|chr8:119746807-119746807|T/-|frameshift_variant;TAF2|p.I604Sfs*3|1|0.11|ENSG00000064313|chr8:119785250-119785250|T/-|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MSMS	HCT116MG_D190212_S4	4	522.7537231445312	2	522.753464	1043.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.586	1	22.349	21.849	22.849	-0.23758								0	0	0	0.37224	1	7865	7865		34.932	10.258	1				39561	1138	25279	25405	38093	38093					-0.027631266903881624
YTSYPMHDFY	10	Unmodified	_YTSYPMHDFY_					0	0	0		ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11	ENSG00000138081|ENST00000403359|FBXO11	ENSG00000138081|ENST00000403359|FBXO11	MULTI-MSMS	HCT116MG_D190212_S2	2	662.271484375	2	662.271164	1322.52777	0.40763	0.00026996	0.28567	0.00018919	0.6933	0.00045915	662.2712277972737	45.475	0.30905	45.383	45.205	45.514	-0.092472					14	5	4	0	0	0	0.042873	1	17303	17303		92.491	67.5	1	36455000			39562	3529	25280	25406	38094	38094					-0.12058832224875005
YTTFSKRKT	9	Unmodified	_YTTFSKRKT_					0	0	0		ENSG00000112658|ENST00000265354|SRF	ENSG00000112658|ENST00000265354|SRF	ENSG00000112658|ENST00000265354|SRF	MULTI-MSMS	HCT116MG_D190212_S2	2	566.3118896484375	2	566.31148	1130.60841	0.43449	0.00024606	-0.35381	-0.00020037	0.080679	4.5689E-05	566.3114240567861	27.867	0.20441	27.525	27.398	27.602	-0.34201					5	3	2	0	0	0	0.57626	1	10171	10171		12.532	1.7076	1	13244000			39563	2353	25281	25407	38095	38095					0.04832816880320934
YTTGHWDNY	9	Unmodified	_YTTGHWDNY_					0	0	0		ZNF513|p.R489H|1|0.2|ENSG00000163795|chr2:27377705-27377705|C/T|missense_variant;nc|ENSG00000163795|Q8N8E2-3|ZNF513;nc|ENSG00000163795|Q8N8E2-2|ZNF513;ENSG00000163795|ENST00000323703|ZNF513	ZNF513|p.R489H|1|0.2|ENSG00000163795|chr2:27377705-27377705|C/T|missense_variant	ZNF513|p.R489H|1|0.2|ENSG00000163795|chr2:27377705-27377705|C/T|missense_variant	MSMS	HCT116MG_D190212_S1	1	578.7377319335938	2	578.738345	1155.46214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.6	1	34.6	34.1	35.1	0								0	0	0	0.76575	1	12843	12843		15.847	7.937	1				39564	4631	25282	25408	38096	38096					-0.1093748535558916
YTVPTQNV	8	Unmodified	_YTVPTQNV_					0	0	0		nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	MSMS	HCT116MG_D190212_S3	3	461.23712158203125	2	461.23745	920.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.028	1	44.719	44.219	45.219	-0.30927								0	0	0	0.8837	1	16847	16847		11.64	0.52583	1				39565	3590	25283	25409	38097	38097					-0.003064943735239467
YTVPTQNV	8	Unmodified	_YTVPTQNV_					0	0	0		nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	MSMS	HCT116MG_D190212_S4	4	461.2372741699219	2	461.23745	920.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.979	1	44.606	44.106	45.106	-0.37326								0	0	0	0.87079	1	16576	16576		16.942	2.104	1				39566	3590	25283	25409	38098	38098					-0.003064943735239467
YTVYINKIWD	10	Unmodified	_YTVYINKIWD_					0	0	0		ENST00000554915.1_1_14:20916973-20917096:-|nuORF	ENST00000554915.1_1_14:20916973-20917096:-|nuORF	ENST00000554915.1_1_14:20916973-20917096:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	658.3447875976562	2	657.840071	1313.66559	0.70858	0.00046613	-2.7885	-0.0018344	-2.0799	-0.0013682	658.3414413092859	36.402	0.61663	36.017	35.818	36.434	-0.38558					15	11	2	0	0	0	0.76634	1	13445	13445		14.838	0.93222	1	4527400			39567	8782	25284	25410	38099	38099					0.02130239366033493
YTWGGKETP	9	Unmodified	_YTWGGKETP_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-SECPEP	HCT116MG_D190212_S1	1	519.31298828125	2	519.748182	1037.48181	0.7319	0.0003804	-0.52625	-0.00027352	0.20565	0.00010688	519.7477661125564	37.595	0.15613	37.595	37.499	37.655	0					4	2	2	0	0	0	0.26676	1	14028	14028		2.0598	0.21551	1	3595000	+		39568	14223	25285	25411	38100	38100					-0.03543109344786899
YTWLAEHKP	9	Unmodified	_YTWLAEHKP_					0	0	0		DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.K3112Hfs*3|1|0.31|ENSG00000197102|chr14:102027998-102027999|-/TCACAAG|frameshift_variant;DYNC1H1|p.F2635Lfs*67|1|0.16|ENSG00000197102|chr14:102017141-102017141|T/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	DYNC1H1|p.W4201Gfs*43|1|0.42|ENSG00000197102|chr14:102043958-102043958|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	382.5197448730469	3	382.197708	1143.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.309	1	33.019	32.519	33.519	-0.29013								0	0	0	0.76694	1	12220	12220		7.609	0	1				39569	741	25286	25412	38101	38101					0.005251453345408663
YTYLHPQTP	9	Unmodified	_YTYLHPQTP_					0	0	0			REV__nc|ENSG00000064393|Q9H2X6-3|HIPK2	REV__nc|ENSG00000064393|Q9H2X6-3|HIPK2	MSMS	HCT116MG_D190212_S1	1	560.3426513671875	2	560.277106	1118.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.07	1	28.07	27.57	28.57	0								0	0	0	0.76718	1	10212	10212		10.824	1.4765	1		+		39570	10687	25287	25413	38102	38102					-0.014868474193917791
YVAGSGSL	8	Unmodified	_YVAGSGSL_					0	0	0			REV__nc|ENSG00000184716|A6NH21|SERINC4	REV__nc|ENSG00000184716|A6NH21|SERINC4	MSMS	HCT116MG_D190212_S3	3	377.1913146972656	2	377.192511	752.370469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.803	1	58.539	58.039	59.039	-0.26405								0	0	0	0.8837	1	22378	22378		2.5775	0	1		+		39571	17245	25288	25414	38103	38103					-0.01562123982103003
YVALALLGMV	10	Unmodified	_YVALALLGMV_					0	0	0		ENST00000225388.8_1_17:27586647-27586797:-|nuORF	ENST00000225388.8_1_17:27586647-27586797:-|nuORF	ENST00000225388.8_1_17:27586647-27586797:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S4	4	525.6420288085938	2	525.306821	1048.59909	0.39973	0.00020998	0.25274	0.00013276	0.65247	0.00034275	525.3067771506155	48.008	0.99476	47.639	47.234	48.229	-0.36907					38	22	2	0	0	0	0.87641	2	17635	17635;17653		4.3292	4.3292	1	5058500			39572	6762	25289	25415	38104;38105	38104					0.07673332270428546
YVAQSHIKY	9	Unmodified	_YVAQSHIKY_					0	0	0			REV__ENST00000451871.1_1_13:42499863-42500601:+|nuORF	REV__ENST00000451871.1_1_13:42499863-42500601:+|nuORF	MSMS	HCT116MG_D190212_S2	2	370.20843505859375	3	370.197708	1107.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.171	1	27.841	27.341	28.341	-0.32987								0	0	0	0.76718	1	10265	10265		7.1017	0.37856	1		+		39573	15716	25290	25416	38106	38106					0.021811453345662812
YVDAGTPMY	9	Unmodified	_YVDAGTPMY_					0	0	0		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-MSMS	HCT116MG_D190212_S2	2	1016.4390258789062	1	1016.43936	1015.43208	0.65394	0.00066469	-0.015936	-1.6198E-05	0.638	0.00064849	1016.4389072482803	38.388	0.26175	38.295	38.167	38.428	-0.09301					7	4	2	0	0	0	0.019399	1	14429	14429		97.075	62.972	1	24731000			39574	4242	25291	25417	38107	38107					-0.07501560345122016
YVDAGTPMY	9	Unmodified	_YVDAGTPMY_					0	0	0		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-MSMS	HCT116MG_D190212_S3	3	1016.4409790039062	1	1016.43936	1015.43208	0.48403	0.00049199	0.66535	0.00067628	1.1494	0.0011683	1016.4399821167378	38.627	0.36407	38.326	38.092	38.456	-0.30137					10	6	2	0	0	0	0.019399	1	14328	14328		97.075	58.923	1	7846800			39575	4242	25291	25417	38108	38108					-0.07501560345122016
YVDDASWMRY	10	Unmodified	_YVDDASWMRY_					0	0	0		GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant;GTF3C1|p.V2028Sfs*25|1|0.14|ENSG00000077235|chr16:27462329-27462329|C/-|frameshift_variant;nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.L1167Sfs*9|1|0.07|ENSG00000077235|chr16:27488566-27488566|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	GTF3C1|p.P1914Qfs*30|1|0.16|ENSG00000077235|chr16:27464451-27464451|G/-|frameshift_variant	MULTI-MSMS	HCT116MG_D190212_S2	2	653.7841796875	2	653.282063	1304.54957	0.78821	0.00051492	-0.022795	-1.4891E-05	0.76541	0.00050003	653.2817204865304	47.484	0.41284	47.362	47.13	47.543	-0.12175					16	7	3	0	0	0	0.027339	2	18117	18086;18117		107.1	80.831	1	51662000			39576	1351	25292	25418	38109;38110	38110					-0.09052027476309377
YVDPQFLT	8	Unmodified	_YVDPQFLT_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S2	2	982.4884643554688	1	982.488024	981.480748	1.0847	0.0010657	0.41816	0.00041083	1.5028	0.0014765	982.4884512183238	47.794	0.25815	47.662	47.532	47.79	-0.13281					7	4	2	0	0	0	0.24264	1	18292	18292		65.235	23.395	1	28002000			39577	6308	25293	25419	38111	38111					-0.010733237137174001
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S1	1	1145.5509033203125	1	1145.55135	1144.54408	0.72152	0.00082654	0.092771	0.00010627	0.8143	0.00093282	1145.5511684953617	53.385	0.3096	53.385	53.204	53.514	0					11	5	3	0	0	0	0.010834	1	20445	20445		111.29	57.454	1	64614000			39578	6308	25294	25420	38112	38112					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S1	1	573.781494140625	2	573.279315	1144.54408	0.47435	0.00027194	0.2047	0.00011735	0.67906	0.00038929	573.2793841621606	53.385	0.25833	53.385	53.255	53.514	0					10	4	3	0	0	0	0.047849	1	20455	20455		75.761	21.928	1	66912000			39579	6308	25294	25420	38113	38113					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S2	2	1145.552001953125	1	1145.55135	1144.54408	0.42691	0.00048905	0.21029	0.0002409	0.6372	0.00072994	1145.5514612896013	53.696	0.41304	53.506	53.274	53.687	-0.1894					23	7	4	0	0	0	0.0050238	1	20635	20635		137.42	83.591	1	370750000			39580	6308	25294	25420	38114	38114					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S2	2	573.279541015625	2	573.279315	1144.54408	0.2491	0.0001428	0.44583	0.00025559	0.69493	0.00039839	573.2794204225728	53.696	0.41304	53.506	53.274	53.687	-0.1894					21	7	4	0	0	0	0.0201	1	20641	20641		96.367	42.534	1	280300000			39581	6308	25294	25420	38115	38115					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S3	3	573.2796630859375	2	573.279315	1144.54408	0.47991	0.00027512	0.15565	8.9233E-05	0.63556	0.00036436	573.279210883183	53.887	0.36444	53.587	53.404	53.769	-0.29946					14	6	3	0	0	0	0.020353	1	20397	20397		96.111	42.278	1	20191000			39582	6308	25294	25420	38116	38116					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S3	3	1145.5537109375	1	1145.55135	1144.54408	0.45454	0.0005207	-0.043795	-5.0169E-05	0.41074	0.00047053	1145.551355693178	53.88	0.36444	53.58	53.404	53.769	-0.29946					17	6	3	0	0	0	0.012496	1	20401	20401		107.19	53.354	1	19061000			39583	6308	25294	25420	38117	38117					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S4	4	573.2799072265625	2	573.279315	1144.54408	0.58069	0.0003329	0.30147	0.00017283	0.88216	0.00050573	573.7809320677413	53.898	0.20816	53.568	53.457	53.665	-0.32923					8	3	3	0	0	0	0.31596	3	20159	20098;20118;20159		29.082	16.654	1	3872600			39584	6308	25294	25420	38118;38119;38120	38120					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2;nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	HCT116MG_D190212_S4	4	1145.550537109375	1	1145.55135	1144.54408	0.55324	0.00063376	-0.22687	-0.00025989	0.32637	0.00037388	1145.5506514250687	53.911	0.26008	53.582	53.405	53.665	-0.32923					9	4	3	0	0	0	0.023778	1	20153	20153		92.653	46.954	1	5066800			39585	6308	25294	25420	38121	38121					-0.022413829964762044
YVDTGKLIDK	10	Unmodified	_YVDTGKLIDK_					0	0	0		ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	MSMS	HCT116MG_D190212_S2	2	576.320068359375	2	576.318971	1150.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.265	1	36.137	35.637	36.637	-0.12799								0	0	0	0.89486	1	13556	13556		16.566	4.0343	1				39586	4354	25295	25421	38122	38122					0.054102639576512956
YVEGVHQQY	9	Unmodified	_YVEGVHQQY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MSMS	HCT116MG_D190212_S1	1	562.266357421875	2	561.764363	1121.51417	0.334	0.00018763	-0.0047764	-2.6832E-06	0.32923	0.00018495	562.2660699972798	25.535	0.31313	25.535	25.405	25.718	0					7	5	2	0	0	0	0.077982	1	9214	9214		62.573	26.446	1	10426000			39587	1123	25296	25422	38123	38123					-0.04172321941814516
YVEGVHQQY	9	Unmodified	_YVEGVHQQY_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MSMS	HCT116MG_D190212_S2	2	561.7646484375	2	561.764363	1121.51417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.974	1	25.605	25.105	26.105	-0.36914								0	0	0	0.012293	1	9377	9377		103.35	57.654	1				39588	1123	25296	25422	38124	38124					-0.04172321941814516
YVEPALNPRDE	11	Unmodified	_YVEPALNPRDE_					0	0	0		L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|145|2|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|145|2|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|145|2|anti-sense	MSMS	HCT116MG_D190212_S2	2	434.8826599121094	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.56375	1	0.55981	0.059809	1.0598	-0.0039395								0	0	0	0.96208	1	183	183		0	0	1				39589	9282	25297	25423	38125	38125					-0.01356727024403881
YVEPALNPRDE	11	Unmodified	_YVEPALNPRDE_					0	0	0		L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|145|2|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|145|2|anti-sense	L1PA5_dup2765|chr4:69723015-69726028:+|1.903650506224423|0.171219590839865|3.47|472.0|145|2|anti-sense	MSMS	HCT116MG_D190212_S2	2	434.8822937011719	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.378	1	1.3648	0.86476	1.8648	-0.013221								0	0	0	0.96208	1	447	447		0	0	1				39590	9282	25297	25423	38126	38126					-0.01356727024403881
YVEPARQHER	10	Unmodified	_YVEPARQHER_					0	0	0			REV__ENST00000484500.5_1_3:125642769-125647435:+|nuORF	REV__ENST00000484500.5_1_3:125642769-125647435:+|nuORF	MSMS	HCT116MG_D190212_S1	1	642.8262329101562	2	642.825818	1283.63708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.598	1	11.598	11.098	12.098	0								0	0	0	0.97116	1	3664	3664		0	0	1		+		39591	11645	25298	25424	38127	38127					0.006609345094375385
YVFDEQLP	8	Unmodified	_YVFDEQLP_					0	0	0			REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A	REV__nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MSMS	HCT116MG_D190212_S3	3	505.7450866699219	2	505.745108	1009.47566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.635	1	57.36	56.86	57.86	-0.27434								0	0	0	0.8837	1	21907	21907		9.3474	0	1		+		39592	12605	25299	25425	38128	38128					-0.02869627576342282
YVFLAVVVSI	10	Unmodified	_YVFLAVVVSI_					0	0	0			REV__nc|ENSG00000182168|O95185-2|UNC5C	REV__nc|ENSG00000182168|O95185-2|UNC5C	MSMS	HCT116MG_D190212_S2	2	555.3330688476562	2	555.333893	1108.65323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.082	1	48.928	48.428	49.428	-0.15405								0	0	0	0.93576	1	18773	18773		7.9102	0	1		+		39593	13707	25300	25426	38129	38129					0.10325247693663187
YVFLKQIPK	9	Unmodified	_YVFLKQIPK_					0	0	0		nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8-3|TTC21A	nc|ENSG00000168026|Q8NDW8|TTC21A	nc|ENSG00000168026|Q8NDW8|TTC21A	MSMS	HCT116MG_D190212_S4	4	379.23370361328125	3	379.233982	1134.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.738	1	26.437	25.937	26.937	-0.30087								0	0	0	0.7696	1	9539	9539		1.1933	0	1				39594	9538	25301	25427	38130	38130					0.11816356304825604
YVGGIPAH	8	Unmodified	_YVGGIPAH_					0	0	0			REV__ENST00000254958.9_1_20:10654289-10654499:-|nuORF	REV__ENST00000254958.9_1_20:10654289-10654499:-|nuORF	MULTI-MSMS	HCT116MG_D190212_S2	2	407.2164001464844	2	407.216321	812.418088	-0.089746	-3.6546E-05	0.37628	0.00015323	0.28653	0.00011668	407.21629746298765	36.691	0.25841	36.576	36.447	36.705	-0.11478					9	4	3	0	0	0	0.8029	1	13756	13756		11.114	0	1	24535000	+		39595	14602	25302	25428	38131	38131					0.004375750087547203
YVGHPGGG	8	Unmodified	_YVGHPGGG_					0	0	0			REV__nc|ENSG00000167483|Q86XR2-2|NIBAN3	REV__nc|ENSG00000167483|Q86XR2-2|NIBAN3	MSMS	HCT116MG_D190212_S1	1	372.1772155761719	2	372.177195	742.339838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.365	1	10.365	9.8655	10.865	0								0	0	0	0.8837	1	3176	3176		0	0	1		+		39596	17201	25303	25429	38132	38132					-0.0416385757646367
YVHSPQHMGI	10	Unmodified	_YVHSPQHMGI_					0	0	0			REV__ENST00000226004.7_1_17:41845534-41845828:-|nuORF	REV__ENST00000226004.7_1_17:41845534-41845828:-|nuORF	MSMS	HCT116MG_D190212_S1	1	584.7833862304688	2	584.782033	1167.54951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.438	1	46.438	45.938	46.938	0								0	0	0	0.94107	1	17619	17619		6.7232	1.9672	1		+		39597	14536	25304	25430	38133	38133					-0.0275598268565318
YVIDPIKGLKL	11	Unmodified	_YVIDPIKGLKL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	629.89208984375	2	629.892106	1257.76966	0.35146	0.00022138	-0.87577	-0.00055164	-0.52431	-0.00033026	629.8920554919872	53.284	0.30984	53.095	52.913	53.223	-0.18922					9	5	2	0	0	0	0.48205	1	20519	20519		47.732	31.583	1	16408000			39598	5492	25305	25431	38134	38134					0.1510856619356673
YVIDPIKGLKL	11	Unmodified	_YVIDPIKGLKL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	HCT116MG_D190212_S2	2	420.2641906738281	3	420.26383	1257.76966	-0.10484	-4.406E-05	0.26701	0.00011221	0.16217	6.8153E-05	420.2642286640526	53.284	0.25764	53.095	52.966	53.223	-0.18922					7	4	2	0	0	0	0.55672	1	20526	20526		32.616	24.172	1	13500000			39599	5492	25305	25431	38135	38135					0.1510856619356673
YVIFDDYCCD	10	Unmodified	_YVIFDDYCCD_					0	0	0			REV__TLR7|p.A893D|1|0.34|ENSG00000196664|chrX:12888186-12888186|C/A|missense_variant	REV__TLR7|p.A893D|1|0.34|ENSG00000196664|chrX:12888186-12888186|C/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	628.2314453125	2	628.235932	1254.45731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.1853	1	1.2462	0.74621	1.7462	0.060905								0	0	0	0.96937	1	374	374		0.40072	0	1		+		39600	17640	25306	25432	38136	38136					-0.1597387360486664
YVIKLDRW	8	Unmodified	_YVIKLDRW_					0	0	0			REV__nc|ENSG00000182287|P56377|AP1S2	REV__nc|ENSG00000182287|P56377|AP1S2	MSMS	HCT116MG_D190212_S1	1	546.81396484375	2	546.813659	1091.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.091	1	11.091	10.591	11.591	0								0	0	0	0.8837	1	3460	3460		0	0	1		+		39601	13713	25307	25433	38137	38137					0.07062326093864613
YVIKRELL	8	Unmodified	_YVIKRELL_					0	0	0		ENST00000510346.5_1_5:110836746-110848166:-|nuORF	ENST00000510346.5_1_5:110836746-110848166:-|nuORF	ENST00000510346.5_1_5:110836746-110848166:-|nuORF	MSMS	HCT116MG_D190212_S2	2	517.3222045898438	2	517.32386	1032.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.843	1	43.765	43.265	44.265	-0.078373								0	0	0	0.8837	1	16635	16635		14.582	2.9414	1				39602	8494	25308	25434	38138	38138					0.11815496753706611
YVINDLTAV	9	Unmodified	_YVINDLTAV_					0	0	0		nc|ENSG00000102172|P52788-2|SMS;ENSG00000102172|ENST00000404933|SMS	nc|ENSG00000102172|P52788-2|SMS	nc|ENSG00000102172|P52788-2|SMS	MULTI-MSMS	HCT116MG_D190212_S2	2	1007.5403442382812	1	1007.54079	1006.53351	0.59853	0.00060305	-1.28	-0.0012896	-0.68142	-0.00068656	1007.5390768372735	51.554	0.25734	51.371	51.218	51.475	-0.18368					9	4	3	0	0	0	0.042978	1	19805	19805		78.149	9.0445	1	13168000			39603	1828	25309	25435	38139	38139					0.030506343490856125
YVISLSVITKF	11	Unmodified	_YVISLSVITKF_					0	0	0			REV__ENST00000376494.1_1_13:99373362-99378793:-|nuORF	REV__ENST00000376494.1_1_13:99373362-99378793:-|nuORF	MSMS	HCT116MG_D190212_S3	3	635.3756103515625	2	635.376289	1268.73803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.122	1	57.852	57.352	58.352	-0.26932								0	0	0	0.93295	1	22103	22103		15.248	0	1		+		39604	10957	25310	25436	38140	38140					0.11440573439585933
YVIWMIRDSN	10	Unmodified	_YVIWMIRDSN_					0	0	0		SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant;SNX13|p.K644Rfs*3|1|0.23|ENSG00000071189|chr7:17816204-17816204|T/-|frameshift_variant;SNX13|p.F741Lfs*6|1|0.38|ENSG00000071189|chr7:17803422-17803422|A/-|frameshift_variant;SNX13|p.F895Lfs*9|1|0.23|ENSG00000071189|chr7:17794234-17794234|A/-|frameshift_variant;SNX13|p.F911Wfs*5|1|0.02|ENSG00000071189|chr7:17794184-17794187|AAGA/-|frameshift_variant;SNX13|p.E913Qfs*13|1|0.04|ENSG00000071189|chr7:17794182-17794183|-/TTTG|frameshift_variant;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13;SNX13|p.T598Pfs*13|1|0.23|ENSG00000071189|chr7:17821562-17821562|T/-|frameshift_variant	SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant	SNX13|p.T630Dfs*3|1|0.13|ENSG00000071189|chr7:17816248-17816249|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	432.8856506347656	3	432.885024	1295.63324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.2342	1	2.2895	1.7895	2.7895	0.055284								0	0	0	0.97061	1	684	684		0.12286	0	1				39605	1250	25311	25437	38141	38141					-0.002748713086020871
YVKDIYAY	8	Unmodified	_YVKDIYAY_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	HCT116MG_D190212_S2	2	517.763427734375	2	517.7633	1033.51205	0.20647	0.0001069	0.18875	9.7727E-05	0.39522	0.00020463	517.763314021148	37.059	0.30921	36.944	36.757	37.066	-0.11478					14	5	3	0	0	0	0.15825	1	13885	13885		81.89	23.211	1	45779000			39606	3261	25312	25438	38142	38142					-0.0033675067961667082
YVKDIYQY	8	Unmodified	_YVKDIYQY_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	HCT116MG_D190212_S2	2	546.2744750976562	2	546.274032	1090.53351	0.66805	0.00036494	0.45093	0.00024633	1.119	0.00061127	546.2742231858855	36.327	0.46677	36.199	36.019	36.486	-0.12799					23	8	5	0	0	0	0.058486	1	13583	13583		131.27	56.845	1	226920000			39607	4328	25313	25439	38143	38143					-0.008133656509016873
YVKEGNHVIQY	11	Unmodified	_YVKEGNHVIQY_					0	0	0			REV__ENSG00000142065|ENST00000270001|ZFP14	REV__ENSG00000142065|ENST00000270001|ZFP14	MULTI-MSMS	HCT116MG_D190212_S2	2	675.34521484375	2	675.346052	1348.67755	0.23169	0.00015647	-0.7902	-0.00053366	-0.55852	-0.00037719	675.3452093631362	32.251	0.20794	32.021	31.89	32.098	-0.23009					5	3	2	0	0	0	0.57136	1	11951	11951		38.615	5.8291	1	22225000	+		39608	12343	25314	25440	38144	38144					0.017158561092401214
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.232666015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.18475	1	0.18475	-0.31525	0.68475	0								0	0	0	0.8837	1	72	72		0	0	1		+		39609	15720	25315	25441	38145	38145					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.23272705078125	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.2353	1	1.2353	0.7353	1.7353	0								0	0	0	0.8837	1	378	378		0	0	1		+		39610	15720	25315	25441	38146	38146					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.23260498046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.7832	1	1.7832	1.2832	2.2832	0								0	0	0	0.8837	1	540	540		0	0	1		+		39611	15720	25315	25441	38147	38147					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.23260498046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.3496	1	2.3496	1.8496	2.8496	0								0	0	0	0.8837	1	711	711		0	0	1		+		39612	15720	25315	25441	38148	38148					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.23260498046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	8.6604	1	8.6604	8.1604	9.1604	0								0	0	0	0.8837	1	2612	2612		0	0	1		+		39613	15720	25315	25441	38149	38149					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.2323913574219	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.828	1	12.828	12.328	13.328	0								0	0	0	0.8837	1	4138	4138		0	0	1		+		39614	15720	25315	25441	38150	38150					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S1	1	403.1022033691406	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.551	1	63.551	63.051	64.051	0								0	0	0	0.8837	1	24550	24550		0	0	1		+		39615	15720	25315	25441	38151	38151					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S2	2	403.2325134277344	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	5.1228	1	5.0041	4.5041	5.5041	-0.11871								0	0	0	0.8837	1	1615	1615		0	0	1		+		39616	15720	25315	25441	38152	38152					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S2	2	403.23297119140625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.4854	1	9.2304	8.7304	9.7304	-0.25508								0	0	0	0.8837	1	2966	2966		0	0	1		+		39617	15720	25315	25441	38153	38153					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S2	2	403.2326965332031	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.473	1	12.176	11.676	12.676	-0.29721								0	0	0	0.8837	1	4078	4078		0	0	1		+		39618	15720	25315	25441	38154	38154					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S2	2	403.2327880859375	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.632	1	13.328	12.828	13.828	-0.30453								0	0	0	0.8837	1	4460	4460		0	0	1		+		39619	15720	25315	25441	38155	38155					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S3	3	403.2322998046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.1613	1	0.22221	-0.27779	0.72221	0.060905								0	0	0	0.8837	1	63	63		0	0	1		+		39620	15720	25315	25441	38156	38156					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S3	3	403.2327880859375	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.8354	1	0.8963	0.3963	1.3963	0.060905								0	0	0	0.8837	1	270	270		0	0	1		+		39621	15720	25315	25441	38157	38157					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S3	3	403.23260498046875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.521	1	10.561	10.061	11.061	0.039975								0	0	0	0.8837	1	3189	3189		0.79363	0	1		+		39622	15720	25315	25441	38158	38158					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S3	3	403.23211669921875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.741	1	62.518	62.018	63.018	-0.22315								0	0	0	0.8837	1	23968	23968		0	0	1		+		39623	15720	25315	25441	38159	38159					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S3	3	403.2324523925781	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.648	1	63.433	62.933	63.933	-0.21454								0	0	0	0.8837	1	24274	24274		0	0	1		+		39624	15720	25315	25441	38160	38160					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S3	3	403.232666015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.804	1	64.604	64.104	65.104	-0.2009								0	0	0	0.8837	1	24625	24625		0	0	1		+		39625	15720	25315	25441	38161	38161					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S4	4	403.232421875	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	7.0877	1	6.8376	6.3376	7.3376	-0.25015								0	0	0	0.8837	1	2169	2169		0	0	1		+		39626	15720	25315	25441	38162	38162					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S4	4	403.232666015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.017	1	10.836	10.336	11.336	-0.18135								0	0	0	0.8837	1	3397	3397		0	0	1		+		39627	15720	25315	25441	38163	38163					0.03934148042867491
YVKKGPGG	8	Unmodified	_YVKKGPGG_					0	0	0			REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	REV__ENST00000452400.6_1_8:71074989-71075782:-|nuORF	MSMS	HCT116MG_D190212_S4	4	403.23248291015625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.383	1	63.144	62.644	63.644	-0.2389								0	0	0	0.8837	1	23903	23903		0	0	1		+		39628	15720	25315	25441	38164	38164					0.03934148042867491
YVKNGGGT	8	Unmodified	_YVKNGGGT_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	HCT116MG_D190212_S2	2	795.4008178710938	1	795.399544	794.392267	1.1788	0.0009376	-0.23738	-0.00018881	0.94139	0.00074878	795.3992384512663	27.404	0.25751	27.062	26.933	27.191	-0.34201					6	4	2	0	0	0	0.66848	1	9987	9987		26.341	6.9023	1	9528800	+		39629	11564	25316	25442	38165	38165					-0.013153192335153108
YVLILKTILS	10	Unmodified	_YVLILKTILS_					0	0	0		ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	MSMS	HCT116MG_D190212_S4	4	388.2540588378906	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.134	1	43.76	43.26	44.26	-0.37373								0	0	0	0.97054	1	16248	16248		0.13989	0	1				39630	5439	25317	25443	38166	38166					0.1628977879058766
YVLILKTILS	10	Unmodified	_YVLILKTILS_					0	0	0		ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	MSMS	HCT116MG_D190212_S4	4	388.25408935546875	3	388.253042	1161.7373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.644	1	52.304	51.804	52.804	-0.34023								0	0	0	0.97054	1	19631	19631		0.13989	0	1				39631	5439	25317	25443	38167	38167					0.1628977879058766
YVLKKIKKKI	10	Unmodified	_YVLKKIKKKI_					0	0	0		tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	tr|U7T266|U7T266_FUSNUDNA-bindingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00487PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	420.9643859863281	3	420.963715	1259.86931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.988	1	12.988	12.488	13.488	0								0	0	0	0.97116	1	4197	4197		0	0	1				39632	18567	25318	25444	38168	38168					0.24977428598162987
YVLNRIIY	8	Unmodified	_YVLNRIIY_					0	0	0		ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	MSMS	HCT116MG_D190212_S4	4	527.3067626953125	2	527.30821	1052.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.617	1	46.245	45.745	46.745	-0.37134								0	0	0	0.8837	1	17216	17216		6.3541	0.59368	1				39633	6270	25319	25445	38169	38169					0.07766923719623264
YVLPEVSKV	9	Unmodified	_YVLPEVSKV_					0	0	0		nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	nc|ENSG00000115211|Q9UI10-3|EIF2B4	nc|ENSG00000115211|Q9UI10-3|EIF2B4	MULTI-MSMS	HCT116MG_D190212_S2	2	517.3004150390625	2	517.30005	1032.58555	0.064455	3.3343E-05	0.48041	0.00024852	0.54487	0.00028186	517.3000412863171	43.454	0.41277	43.381	43.097	43.51	-0.073376					12	7	2	0	0	0	0.10244	1	16490	16490		57.722	17.765	1	16206000			39634	2452	25320	25446	38170	38170					0.07055797762859584
YVPLPIIDSVE	11	Unmodified	_YVPLPIIDSVE_					0	0	0		ENSG00000187954|ENST00000530374|ZFTRAF1;nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	ENSG00000187954|ENST00000530374|ZFTRAF1	ENSG00000187954|ENST00000530374|ZFTRAF1	MSMS	HCT116MG_D190212_S1	1	622.84228515625	2	622.842279	1243.67001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.794	1	10.794	10.294	11.294	0								0	0	0	0.96208	1	3340	3340		0	0	1				39635	5964	25321	25447	38171	38171					0.05791703788918312
YVPLPIIDSVE	11	Unmodified	_YVPLPIIDSVE_					0	0	0		ENSG00000187954|ENST00000530374|ZFTRAF1;nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	ENSG00000187954|ENST00000530374|ZFTRAF1	ENSG00000187954|ENST00000530374|ZFTRAF1	MSMS	HCT116MG_D190212_S1	1	622.8423461914062	2	622.842279	1243.67001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.424	1	11.424	10.924	11.924	0								0	0	0	0.96208	1	3594	3594		0	0	1				39636	5964	25321	25447	38172	38172					0.05791703788918312
YVPRPFRKPR	10	Unmodified	_YVPRPFRKPR_					0	0	0			REV__ENST00000551739.5_1_12:56332068-56333318:+|nuORF	REV__ENST00000551739.5_1_12:56332068-56333318:+|nuORF	MSMS	HCT116MG_D190212_S4	4	658.5316162109375	2	658.390931	1314.76731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.725	1	53.396	52.896	53.896	-0.32923								0	0	0	0.95179	1	20067	20067		4.3292	1.334	1		+		39637	16424	25322	25448	38173	38173					0.1225157529909211
YVQSDCDPPSD	11	Unmodified	_YVQSDCDPPSD_					0	0	0		nc|ENSG00000172728|Q6P4F1-3|FUT10;nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-6|FUT10;ENSG00000172728|ENST00000327671|FUT10;nc|ENSG00000172728|Q6P4F1-2|FUT10	nc|ENSG00000172728|Q6P4F1-3|FUT10	nc|ENSG00000172728|Q6P4F1-3|FUT10	MULTI-MSMS	HCT116MG_D190212_S4	4	613.23779296875	2	613.237518	1224.46048	0.7018	0.00043037	0.69205	0.00042439	1.3938	0.00085476	613.238002811182	30.782	0.20612	30.417	30.307	30.513	-0.36416					6	4	2	0	0	0	0.73844	1	11166	11166		7.609	3.0801	1	3497200			39638	5257	25323	25449	38174	38174					-0.1427690722650823
YVQSRPLHP	9	Unmodified	_YVQSRPLHP_					0	0	0			REV__ENSG00000180549|ENST00000314412|FUT7	REV__ENSG00000180549|ENST00000314412|FUT7	MSMS	HCT116MG_D190212_S1	1	366.20208740234375	3	366.201452	1095.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.358	1	28.358	27.858	28.858	0								0	0	0	0.76759	1	10326	10326		9.3831	0	1		+		39639	13664	25324	25450	38175	38175					0.03855967428717122
YVRIARLTF	9	Unmodified	_YVRIARLTF_					0	0	0			REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant;REV__ENSG00000105613|ENST00000251472|MAST1	REV__MAST2|p.R1274Dfs*9|1|0.49|ENSG00000086015|chr1:46034213-46034213|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S3	3	380.227783203125	3	380.229231	1137.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.911	1	56.632	56.132	57.132	-0.27913								0	0	0	0.76948	1	21616	21616		2.7352	0	1		+		39640	10928;11261	25325	25451	38176	38176					0.10253703876537656
YVRKLKERQR	10	Unmodified	_YVRKLKERQR_					0	0	0		nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	MSMS	HCT116MG_D190212_S1	1	459.27972412109375	3	459.280877	1374.8208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.294	1	54.294	53.794	54.794	0								0	0	0	0.96804	1	20816	20816		0.69767	0.55777	1				39641	5267	25326	25452	38177	38177					0.14838328010955593
YVRKYFIRCLK	11	Unmodified	_YVRKYFIRCLK_					0	0	0		ENST00000310421.4_1_8:67545353-67545431:-|nuORF	ENST00000310421.4_1_8:67545353-67545431:-|nuORF	ENST00000310421.4_1_8:67545353-67545431:-|nuORF	MSMS	HCT116MG_D190212_S3	3	496.9544372558594	3	496.955113	1487.84351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.795	1	43.489	42.989	43.989	-0.30616								0	0	0	0.95976	1	16352	16352		1.2148	0.70888	1				39642	7051	25327	25453	38178	38178					0.1191021108422774
YVRRKRKKQL	10	Unmodified	_YVRRKRKKQL_					0	0	0			REV__ENST00000348579.6_1_16:67428515-67429028:-|nuORF	REV__ENST00000348579.6_1_16:67428515-67429028:-|nuORF	MSMS	HCT116MG_D190212_S3	3	687.9466552734375	2	687.943862	1373.87317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.546	1	43.24	42.74	43.74	-0.30616								0	0	0	0.96291	1	16252	16252		1.8442	1.4936	1		+		39643	15018	25328	25454	38179	38179					0.20118911144595586
YVSKGSAR	8	Unmodified	_YVSKGSAR_					0	0	0		FLT4|p.R1070S|1|0.43|ENSG00000037280|chr5:180616378-180616378|G/T|missense_variant	FLT4|p.R1070S|1|0.43|ENSG00000037280|chr5:180616378-180616378|G/T|missense_variant	FLT4|p.R1070S|1|0.43|ENSG00000037280|chr5:180616378-180616378|G/T|missense_variant	MSMS	HCT116MG_D190212_S4	4	434.2382507324219	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.841	1	40.463	39.963	40.963	-0.37793								0	0	0	0.8837	1	14998	14998		2.8892	0	1				39644	9160	25329	25455	38180	38180					0.02244345066196729
YVSMAVTFGF	10	Unmodified	_YVSMAVTFGF_					0	0	0		ENSG00000128039|ENST00000264228|SRD5A3	ENSG00000128039|ENST00000264228|SRD5A3	ENSG00000128039|ENST00000264228|SRD5A3	MULTI-MSMS	HCT116MG_D190212_S4	4	561.270751953125	2	561.270435	1120.52632	0.21742	0.00012203	0.38654	0.00021695	0.60396	0.00033898	561.2706853983859	21.099	0.72685	20.889	20.344	21.071	-0.20959					17	13	2	0	0	0	0.67188	1	7157	7157		22.736	4.5899	1	5899200			39645	2987	25330	25456	38181	38181					-0.029124215229785477
YVTPGSGI	8	Unmodified	_YVTPGSGI_					0	0	0			REV__PNMT|p.A120Pfs*32|1|0.29|ENSG00000141744|chr17:39669780-39669780|G/-|frameshift_variant	REV__PNMT|p.A120Pfs*32|1|0.29|ENSG00000141744|chr17:39669780-39669780|G/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	397.2073669433594	2	397.208161	792.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.518	1	39.44	38.94	39.94	-0.077835								0	0	0	0.8837	1	14876	14876		15.768	0	1		+		39646	12340	25331	25457	38182	38182					-0.002735509479975917
YVVKNMII	8	Unmodified	_YVVKNMII_					0	0	0			REV__OR13C4|p.K186Nfs*2|1|0.13|ENSG00000148136|chr9:104526652-104526652|T/-|frameshift_variant	REV__OR13C4|p.K186Nfs*2|1|0.13|ENSG00000148136|chr9:104526652-104526652|T/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	490.28564453125	2	490.285889	978.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.749	1	28.749	28.249	29.249	0								0	0	0	0.8837	1	10482	10482		9.3474	0	1		+		39647	12529	25332	25458	38183	38183					0.06708776581922393
YVVVQIKY	8	Unmodified	_YVVVQIKY_					0	0	0			REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	MSMS	HCT116MG_D190212_S4	4	506.29913330078125	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.791	1	41.415	40.915	41.915	-0.37637								0	0	0	0.8837	1	15336	15336		2.5775	0.27475	1		+		39648	14525	25333	25459	38184	38184					0.07520118971035572
YVWTLKGRTWK	11	Unmodified	_YVWTLKGRTWK_					0	0	0		ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;ENSG00000130429|ENST00000646101|ARPC1B	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	MSMS	HCT116MG_D190212_S4	4	719.40625	2	719.403704	1436.79285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.335	1	48.972	48.472	49.472	-0.36322								0	0	0	0.95636	1	18296	18296		2.9952	1.5133	1				39649	3080	25334	25460	38185	38185					0.09193005030897439
YVYPYQSY	8	Unmodified	_YVYPYQSY_					0	0	0		tr|U7T3F7|U7T3F7_FUSNUDUF234domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00369PE=4SV=1	tr|U7T3F7|U7T3F7_FUSNUDUF234domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00369PE=4SV=1	tr|U7T3F7|U7T3F7_FUSNUDUF234domain-containingproteinOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00369PE=4SV=1	MSMS	HCT116MG_D190212_S3	3	541.8530883789062	2	541.745108	1081.47566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.874	1	44.565	44.065	45.065	-0.30927								0	0	0	0.84187	1	16785	16785		19.257	3.4098	1				39650	18597	25335	25461	38186	38186					-0.06181627576347637
YVYSGERPPA	10	Unmodified	_YVYSGERPPA_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	HCT116MG_D190212_S3	3	569.780517578125	2	569.780013	1137.54547	0.37823	0.00021551	0.16243	9.255E-05	0.54066	0.00030806	569.7800773028656	23.031	0.20802	22.997	22.88	23.088	-0.034426					5	3	2	0	0	0	0.82332	1	8147	8147		10.074	0.6908	1	2876900	+		39651	13934	25336	25462	38187	38187					-0.017797489077111095
YWEKLVYL	8	Unmodified	_YWEKLVYL_					0	0	0		FAM71B|p.N320Kfs*6|1|0.4|ENSG00000170613|chr5:157163305-157163306|-/T|frameshift_variant;FAM71B|p.L538*|2|0.27|ENSG00000170613|chr5:157162652-157162652|A/-|frameshift_variant;ENSG00000170613|ENST00000302938|GARIN3	FAM71B|p.N320Kfs*6|1|0.4|ENSG00000170613|chr5:157163305-157163306|-/T|frameshift_variant	FAM71B|p.N320Kfs*6|1|0.4|ENSG00000170613|chr5:157163305-157163306|-/T|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	371.87103271484375	3	371.870821	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.681	1	63.559	63.059	64.059	-0.12264								0	0	0	0.8837	1	24682	24682		0.40072	0.1317	1				39652	5145	25337	25463	38188	38188					0.03884101625476433
YWGRHRKKP	9	Unmodified	_YWGRHRKKP_					0	0	0			REV__nc|ENSG00000141449|Q9C091-3|GREB1L	REV__nc|ENSG00000141449|Q9C091-3|GREB1L	MSMS	HCT116MG_D190212_S1	1	614.3447265625	2	614.346523	1226.67849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.309	1	59.309	58.809	59.809	0								0	0	0	0.77008	1	22857	22857		0.6015	0	1		+		39653	12333	25338	25464	38189	38189					0.0742216005944556
YWKMWKRFERD	11	Unmodified	_YWKMWKRFERD_					0	0	0			REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	MSMS	HCT116MG_D190212_S1	1	822.9088134765625	2	822.908827	1643.8031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.296	1	31.296	30.796	31.796	0								0	0	0	0.96208	1	11510	11510		0	0	1		+		39654	17097	25339	25465	38190	38190					0.00695244693793029
YWLNDDWYLK	10	Unmodified	_YWLNDDWYLK_					0	0	0		nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;ALOX5|p.M383Ifs*19|1|0.12|ENSG00000012779|chr10:45440597-45440597|G/-|frameshift_variant;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5	nc|ENSG00000012779|P09917-3|ALOX5	nc|ENSG00000012779|P09917-3|ALOX5	MSMS	HCT116MG_D190212_S2	2	472.5587158203125	3	472.559194	1414.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.8909	1	1.8776	1.3776	2.3776	-0.013221								0	0	0	0.96937	1	612	612		0.13989	0	1				39655	907	25340	25466	38191	38191					-0.03498948639366972
YWLYVILC	8	Unmodified	_YWLYVILC_					0	0	0			REV__nc|ENSG00000144320|Q9C0E8-2|LNPK	REV__nc|ENSG00000144320|Q9C0E8-2|LNPK	MSMS	HCT116MG_D190212_S1	1	536.780029296875	2	536.780439	1071.54633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.643	1	11.643	11.143	12.143	0								0	0	0	0.8837	1	3682	3682		0	0	1		+		39656	12418	25341	25467	38192	38192					0.013413742076409108
YWLYVILC	8	Unmodified	_YWLYVILC_					0	0	0			REV__nc|ENSG00000144320|Q9C0E8-2|LNPK	REV__nc|ENSG00000144320|Q9C0E8-2|LNPK	MSMS	HCT116MG_D190212_S1	1	536.7803344726562	2	536.780439	1071.54633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.208	1	12.208	11.708	12.708	0								0	0	0	0.8837	1	3903	3903		0	0	1		+		39657	12418	25341	25467	38193	38193					0.013413742076409108
YWRPFYFR	8	Unmodified	_YWRPFYFR_					0	0	0			REV__JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant	REV__JAK2|p.P501Qfs*10|1|0.06|ENSG00000096968|chr9:5069193-5069193|C/-|frameshift_variant	MSMS	HCT116MG_D190212_S1	1	412.21087646484375	3	412.210059	1233.60835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.912	1	40.912	40.412	41.412	0								0	0	0	0.8837	1	15391	15391		9.3831	4.6672	1		+		39658	11038	25342	25468	38194	38194					0.0008886167097443831
YWRYLIELQEP	11	Unmodified	_YWRYLIELQEP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MSMS	HCT116MG_D190212_S3	3	503.9298095703125	3	503.929398	1508.76637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.276	1	32.986	32.486	33.486	-0.29013								0	0	0	0.95996	1	12207	12207		1.1098	0	1		+		39659	12127	25343	25469	38195	38195					0.03233271348904054
YWYVKKYKRTE	11	Unmodified	_YWYVKKYKRTE_					0	0	0			REV__ENST00000478899.1_1_1:156707192-156707995:-|nuORF	REV__ENST00000478899.1_1_1:156707192-156707995:-|nuORF	MSMS	HCT116MG_D190212_S1	1	521.9487915039062	3	521.948793	1562.82455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.99	1	10.99	10.49	11.49	0								0	0	0	0.96208	1	3419	3419		0	0	1		+		39660	12381	25344	25470	38196	38196					0.06564952994153828
YWYVKKYKRTE	11	Unmodified	_YWYVKKYKRTE_					0	0	0			REV__ENST00000478899.1_1_1:156707192-156707995:-|nuORF	REV__ENST00000478899.1_1_1:156707192-156707995:-|nuORF	MSMS	HCT116MG_D190212_S1	1	521.9486694335938	3	521.948793	1562.82455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.539	1	11.539	11.039	12.039	0								0	0	0	0.96208	1	3641	3641		0	0	1		+		39661	12381	25344	25470	38197	38197					0.06564952994153828
YWYYILEMSFY	11	Unmodified	_YWYYILEMSFY_					0	0	0		ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	MSMS	HCT116MG_D190212_S3	3	789.3539428710938	2	789.354696	1576.69484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.015	1	27.827	27.327	28.327	-0.18847								0	0	0	0.95954	1	10121	10121		1.3295	0	1				39662	4212	25345	25471	38198	38198					-0.07043984400002046
YYAHPKQY	8	Unmodified	_YYAHPKQY_					0	0	0			REV__PHF20|p.R845H|1|0.33|ENSG00000025293|chr20:35938930-35938930|G/A|missense_variant	REV__PHF20|p.R845H|1|0.33|ENSG00000025293|chr20:35938930-35938930|G/A|missense_variant	MSMS	HCT116MG_D190212_S1	1	535.2601928710938	2	535.258717	1068.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.286	1	32.286	31.786	32.786	0								0	0	0	0.8837	1	11909	11909		9.3474	0.75416	1		+		39663	17411	25346	25472	38199	38199					-0.02863099245291778
YYELSMGRY	9	Unmodified	_YYELSMGRY_					0	0	0			REV__ENSG00000079393|ENST00000478873|DUSP13	REV__ENSG00000079393|ENST00000478873|DUSP13	MULTI-MSMS	HCT116MG_D190212_S3	3	394.5147399902344	3	394.514708	1180.5223	-0.072255	-2.8506E-05	-0.089678	-3.5379E-05	-0.16193	-6.3885E-05	394.51467330650445	15.762	0.26044	15.847	15.717	15.977	0.085423					7	4	2	0	0	0	0.69329	1	5206	5206		6.1918	3.1196	1	3983300	+		39664	10851	25347	25473	38200	38200					-0.060745110166863014
YYEVLEHT	8	Unmodified	_YYEVLEHT_					0	0	0		nc|ENSG00000129221|Q9NZN9-3|AIPL1;nc|ENSG00000129221|Q9NZN9-2|AIPL1;nc|ENSG00000129221|Q9NZN9-5|AIPL1;nc|ENSG00000129221|Q9NZN9-4|AIPL1;ENSG00000129221|ENST00000381129|AIPL1	nc|ENSG00000129221|Q9NZN9-3|AIPL1	nc|ENSG00000129221|Q9NZN9-3|AIPL1	MSMS	HCT116MG_D190212_S3	3	527.2455444335938	2	527.248015	1052.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.279	1	30.03	29.53	30.53	-0.24946								0	0	0	0.8396	1	11030	11030		19.439	0	1				39665	3024	25348	25474	38201	38201					-0.04266529064648239
YYEVPSEY	8	Unmodified	_YYEVPSEY_					0	0	0		tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	tr|U7SNP7|U7SNP7_FUSNUDNA-directedDNApolymeraseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_01977PE=4SV=1	MULTI-SECPEP	HCT116MG_D190212_S2	2	525.2379760742188	2	525.226748	1048.43894	0.34937	0.0001835	0.2675	0.0001405	0.61687	0.000324	525.226830528947	19.14	0.1561	18.771	18.68	18.836	-0.3695					4	2	2	0	0	0	0.30262	1	6642	6642		13.508	13.508	1	3763100			39666	18369	25349	25475	38202	38202					-0.08333924192902487
YYGRYNSSCI	10	Unmodified	_YYGRYNSSCI_					0	0	0		ENST00000541937.2_1_12:131451015-131457650:+|nuORF;ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1	ENST00000541937.2_1_12:131451015-131457650:+|nuORF	ENST00000541937.2_1_12:131451015-131457650:+|nuORF	MSMS	HCT116MG_D190212_S1	1	409.1828918457031	3	409.181729	1224.52336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.138	1	30.138	29.638	30.638	0								0	0	0	0.95351	1	11042	11042		1.9064	0.69154	1				39667	2293	25350	25476	38203	38203					-0.07992296647785224
YYIKNEVYEGP	11	Unmodified	_YYIKNEVYEGP_					0	0	0			REV__tr|U7T0G9|U7T0G9_FUSNUEthanolamineutilizationprotein,EutPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00816PE=3SV=1	REV__tr|U7T0G9|U7T0G9_FUSNUEthanolamineutilizationprotein,EutPOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00816PE=3SV=1	MSMS	HCT116MG_D190212_S4	4	458.8914794921875	3	458.890721	1373.65033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.029	1	31.654	31.154	32.154	-0.37529								0	0	0	0.94924	1	11649	11649		3.0723	0	1		+		39668	17895	25351	25477	38204	38204					-0.021546722218317882
YYILRPEVI	9	Unmodified	_YYILRPEVI_					0	0	0		ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	MULTI-MSMS	HCT116MG_D190212_S2	2	584.3372802734375	2	583.334424	1164.6543	0.48766	0.00028447	0.3331	0.00019431	0.82076	0.00047878	583.3345855179092	55.084	0.35647	54.896	54.662	55.019	-0.18797					13	6	3	0	0	0	0.55223	1	21184	21184		13.906	1.6654	1	124880000			39669	6209	25352	25478	38205	38205					0.0785546206257095
YYILTCEVQLP	11	Unmodified	_YYILTCEVQLP_					0	0	0			REV__TACSTD2|p.R255C|1|0.44|ENSG00000184292|chr1:58576394-58576394|G/A|missense_variant	REV__TACSTD2|p.R255C|1|0.44|ENSG00000184292|chr1:58576394-58576394|G/A|missense_variant	MSMS	HCT116MG_D190212_S3	3	671.3438110351562	2	671.341589	1340.66863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.346	1	35.047	34.547	35.547	-0.29922								0	0	0	0.84073	1	13043	13043		27.629	4.9707	1		+		39670	17612	25353	25479	38206	38206					0.011917464285488677
YYILTCEVQLP	11	Unmodified	_YYILTCEVQLP_					0	0	0			REV__TACSTD2|p.R255C|1|0.44|ENSG00000184292|chr1:58576394-58576394|G/A|missense_variant	REV__TACSTD2|p.R255C|1|0.44|ENSG00000184292|chr1:58576394-58576394|G/A|missense_variant	MSMS	HCT116MG_D190212_S4	4	671.343994140625	2	671.341589	1340.66863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.625	1	35.239	34.739	35.739	-0.38606								0	0	0	0.80071	1	13023	13023		32.786	13.424	1		+		39671	17612	25353	25479	38207	38207					0.011917464285488677
YYISGDEDRKG	11	Unmodified	_YYISGDEDRKG_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-MSMS	HCT116MG_D190212_S4	4	651.3759765625	2	651.801674	1301.58879	0.59021	0.0003847	-0.35102	-0.0002288	0.23919	0.0001559	651.8013381555235	40.156	0.61234	39.776	39.517	40.129	-0.37936					44	20	3	0	0	0	0.74191	1	14738	14738		6.2058	6.2058	1	13879000			39672	4382	25354	25480	38208	38208					-0.04993603921116119
YYKFWYFFLYR	11	Unmodified	_YYKFWYFFLYR_					0	0	0			REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF	REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF	MSMS	HCT116MG_D190212_S1	1	848.418701171875	2	848.421562	1694.82857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.022	1	27.022	26.522	27.522	0								0	0	0	0.96208	1	9788	9788		0	0	1		+		39673	16140	25355	25481	38209	38209					0.008950424878776175
YYKRRLRRRGQ	11	Unmodified	_YYKRRLRRRGQ_					0	0	0			REV__EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant	REV__EPHA7|p.Q4Kfs*97|1|0.36|ENSG00000135333|chr6:93419333-93419333|A/-|frameshift_variant	MSMS	HCT116MG_D190212_S2	2	776.4547729492188	2	776.458199	1550.90185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.819	1	21.434	20.934	21.934	-0.38503								0	0	0	0.95954	1	7699	7699		1.3295	0.13619	1		+		39674	16795	25356	25482	38210	38210					0.14843028773702827
YYPYGKWNQYY	11	Unmodified	_YYPYGKWNQYY_					0	0	0		tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	772.8445434570312	2	772.845884	1543.67722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.639	1	17.639	17.139	18.139	0								0	0	0	0.95023	1	6016	6016		6.2058	4.7239	1				39675	18606	25357	25483	38211	38211					-0.07287563610611869
YYPYGKWNQYY	11	Unmodified	_YYPYGKWNQYY_					0	0	0		tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	tr|U7T3Q2|U7T3Q2_FUSNUCopperamineoxidaseOS=FusobacteriumnucleatumCTI-5OX=1316586GN=HMPREF1766_00213PE=4SV=1	MSMS	HCT116MG_D190212_S1	1	772.8438110351562	2	772.845884	1543.67722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.259	1	37.259	36.759	37.759	0								0	0	0	0.95636	1	13915	13915		2.9952	0.26005	1				39676	18606	25357	25483	38212	38212					-0.07287563610611869
YYTTAEPRSE	10	Unmodified	_YYTTAEPRSE_					0	0	0		nc|ENSG00000185920|Q13635-4|PTCH1;PTCH1|p.Y1316Tfs*56|3|0.29|ENSG00000185920|chr9:95447311-95447311|G/-|frameshift_variant;PTCH1|p.R1308Efs*64|1|0.24|ENSG00000185920|chr9:95447335-95447335|G/-|frameshift_variant;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF;PTCH1|p.S1203Afs*52|2|0.47|ENSG00000185920|chr9:95449267-95449267|G/-|frameshift_variant	nc|ENSG00000185920|Q13635-4|PTCH1	nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-MSMS	HCT116MG_D190212_S4	4	608.777587890625	2	608.777667	1215.54078	0.97977	0.00059646	-0.086393	-5.2594E-05	0.89337	0.00054387	608.7775701133296	40.247	0.89575	39.869	39.574	40.47	-0.37828					33	21	2	0	0	0	0.83158	1	14926	14926		9.3831	1.7742	1	4253900			39677	5855	25358	25484	38213	38213					-0.0583667784114823
YYWFVDWWPKL	11	Unmodified	_YYWFVDWWPKL_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	HCT116MG_D190212_S1	1	801.8916015625	2	801.892638	1601.77072	0.91439	0.00073324	-2.181	-0.0017489	-1.2666	-0.0010157	801.8908975776537	33.582	0.31123	33.582	33.348	33.659	0					10	5	3	0	0	0	0.74191	1	12455	12455		1.3295	0.9789	1	18361000	+		39678	14060	25359	25485	38214	38214					-0.006092194375469262
YYWFVDWWPKL	11	Unmodified	_YYWFVDWWPKL_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MATCH-MSMS	HCT116MG_D190212_S2	2		2	801.892638	1601.77072	1.0483	0.00084059	-1.6884	-0.0013539	-0.64011	-0.0005133	801.8908597919788	33.701	0.31241	33.508	33.378	33.691	-0.19297	-0.036642	0.00019107	NaN	1.3295	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41376000	+		39679	14060	25359	25485							-0.006092194375469262
YYYVVQYY	8	Unmodified	_YYYVVQYY_					0	0	0			REV__ENSG00000118292|ENST00000369099|C1orf54	REV__ENSG00000118292|ENST00000369099|C1orf54	MSMS	HCT116MG_D190212_S1	1	580.771240234375	2	580.768583	1159.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.092	1	23.092	22.592	23.592	0								0	0	0	0.77419	1	8207	8207		24.674	2.9272	1		+		39680	11633	25360	25486	38215	38215					-0.05076768025173806
YYYYDDYMQNK	11	Unmodified	_YYYYDDYMQNK_					0	0	0			REV__nc|ENSG00000271793|O60506-5|SYNCRIP	REV__nc|ENSG00000271793|O60506-5|SYNCRIP	MSMS	HCT116MG_D190212_S4	4	783.3153076171875	2	783.316299	1564.61805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.426	1	22.198	21.698	22.698	-0.22777								0	0	0	0.96141	1	7800	7800		0.35063	0.043601	1		+		39681	12085	25361	25487	38216	38216					-0.1416782768712892